Query 001810
Match_columns 1010
No_of_seqs 229 out of 1585
Neff 5.2
Searched_HMMs 46136
Date Fri Mar 29 09:51:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001810.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001810hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03159 cation/H(+) antiporte 100.0 5.8E-49 1.3E-53 483.2 44.4 417 577-1008 19-463 (832)
2 PRK03562 glutathione-regulated 100.0 1E-47 2.2E-52 460.4 46.4 375 601-983 5-381 (621)
3 PRK03659 glutathione-regulated 100.0 1.3E-46 2.8E-51 449.7 47.4 375 598-983 2-378 (601)
4 PRK10669 putative cation:proto 100.0 2.7E-44 5.8E-49 426.6 47.1 379 601-981 6-387 (558)
5 COG0475 KefB Kef-type K+ trans 100.0 2.4E-42 5.1E-47 394.7 44.9 367 600-977 5-376 (397)
6 PRK05326 potassium/proton anti 100.0 5.5E-39 1.2E-43 381.7 40.1 371 601-980 6-385 (562)
7 COG4651 RosB Kef-type K+ trans 100.0 2.1E-38 4.6E-43 338.6 33.6 388 600-989 5-395 (408)
8 PF00999 Na_H_Exchanger: Sodiu 100.0 3.6E-39 7.9E-44 363.4 -2.8 363 608-981 3-377 (380)
9 KOG1650 Predicted K+/H+-antipo 100.0 4.8E-35 1E-39 356.5 27.6 394 601-1008 23-448 (769)
10 TIGR00932 2a37 transporter, mo 100.0 1.6E-33 3.5E-38 305.7 33.4 272 611-890 2-273 (273)
11 TIGR00844 c_cpa1 na(+)/h(+) an 100.0 7.2E-33 1.6E-37 332.0 40.8 349 601-956 13-386 (810)
12 TIGR00831 a_cpa1 Na+/H+ antipo 100.0 9.3E-32 2E-36 317.5 40.7 331 606-949 3-363 (525)
13 COG0025 NhaP NhaP-type Na+/H+ 100.0 5.8E-31 1.2E-35 303.8 42.7 372 600-980 5-400 (429)
14 TIGR00840 b_cpa1 sodium/hydrog 100.0 3.2E-30 6.9E-35 305.7 38.1 357 622-984 31-418 (559)
15 COG3263 NhaP-type Na+/H+ and K 100.0 3.9E-27 8.5E-32 262.4 29.8 357 606-974 12-377 (574)
16 KOG1965 Sodium/hydrogen exchan 99.9 8.1E-24 1.8E-28 245.1 25.3 380 601-987 35-459 (575)
17 KOG4505 Na+/H+ antiporter [Ino 99.8 2.9E-18 6.2E-23 186.7 26.8 335 611-953 24-383 (467)
18 PRK14853 nhaA pH-dependent sod 99.7 3.3E-14 7.1E-19 163.1 38.0 301 651-985 61-398 (423)
19 KOG1966 Sodium/hydrogen exchan 99.7 3.2E-18 6.8E-23 198.1 1.8 316 626-947 68-406 (670)
20 TIGR00773 NhaA Na+/H+ antiport 99.5 1.6E-11 3.5E-16 139.0 29.8 291 651-975 51-370 (373)
21 PRK14856 nhaA pH-dependent sod 99.4 2.4E-10 5.3E-15 131.4 28.6 295 651-980 67-429 (438)
22 PRK09560 nhaA pH-dependent sod 99.3 1.9E-09 4.2E-14 122.5 30.1 298 651-983 58-386 (389)
23 PRK14855 nhaA pH-dependent sod 99.3 2E-09 4.4E-14 123.4 29.6 294 651-982 62-414 (423)
24 PRK09561 nhaA pH-dependent sod 99.3 2E-09 4.4E-14 122.2 28.9 298 651-983 58-385 (388)
25 PRK14854 nhaA pH-dependent sod 99.2 5.7E-09 1.2E-13 118.3 30.0 296 651-980 55-377 (383)
26 COG3004 NhaA Na+/H+ antiporter 99.1 4E-08 8.7E-13 108.3 29.3 293 655-983 65-387 (390)
27 PF06965 Na_H_antiport_1: Na+/ 99.1 9.3E-10 2E-14 124.8 13.4 271 651-955 54-353 (378)
28 PRK12460 2-keto-3-deoxyglucona 98.4 9.4E-05 2E-09 82.8 23.9 286 625-986 9-308 (312)
29 PF05684 DUF819: Protein of un 98.0 0.017 3.7E-07 67.1 32.7 82 851-934 247-328 (378)
30 PF03812 KdgT: 2-keto-3-deoxyg 97.8 0.0068 1.5E-07 68.1 24.5 114 623-737 7-134 (314)
31 PF03616 Glt_symporter: Sodium 97.6 0.031 6.8E-07 64.8 27.7 93 842-935 245-342 (368)
32 TIGR00210 gltS sodium--glutama 97.6 0.03 6.6E-07 65.5 27.5 91 842-933 243-338 (398)
33 TIGR00698 conserved hypothetic 97.5 0.11 2.5E-06 59.5 30.3 104 624-731 29-138 (335)
34 PF03601 Cons_hypoth698: Conse 97.5 0.03 6.5E-07 63.4 25.4 110 623-737 23-138 (305)
35 COG3180 AbrB Putative ammonia 97.5 0.31 6.7E-06 56.1 34.7 133 601-743 6-144 (352)
36 PF05145 AmoA: Putative ammoni 97.5 0.12 2.6E-06 58.9 29.2 149 828-985 160-317 (318)
37 COG0385 Predicted Na+-dependen 97.5 0.078 1.7E-06 60.2 27.2 101 656-762 39-143 (319)
38 COG2855 Predicted membrane pro 97.2 0.4 8.6E-06 54.8 29.2 127 625-756 36-166 (334)
39 COG0786 GltS Na+/glutamate sym 97.2 0.084 1.8E-06 61.1 23.9 101 832-932 231-341 (404)
40 COG0798 ACR3 Arsenite efflux p 97.2 0.22 4.8E-06 56.8 26.8 151 627-782 18-177 (342)
41 TIGR00793 kdgT 2-keto-3-deoxyg 97.2 0.039 8.5E-07 61.9 20.4 131 850-985 177-313 (314)
42 PF13593 DUF4137: SBF-like CPA 97.1 0.18 3.9E-06 57.3 25.7 105 654-762 30-139 (313)
43 TIGR00841 bass bile acid trans 97.1 0.25 5.4E-06 55.4 25.6 98 659-762 12-113 (286)
44 PF03601 Cons_hypoth698: Conse 96.9 0.028 6.1E-07 63.6 17.1 154 829-984 7-172 (305)
45 TIGR00832 acr3 arsenical-resis 96.9 0.24 5.2E-06 56.7 24.6 98 659-762 47-149 (328)
46 PRK05274 2-keto-3-deoxyglucona 96.9 0.05 1.1E-06 62.2 18.5 134 849-986 178-316 (326)
47 PRK03659 glutathione-regulated 96.8 0.043 9.3E-07 67.4 18.7 133 612-747 224-358 (601)
48 PRK03562 glutathione-regulated 96.7 0.069 1.5E-06 65.9 19.1 116 827-942 12-128 (621)
49 PLN03159 cation/H(+) antiporte 96.6 0.048 1E-06 69.4 17.2 93 656-748 323-418 (832)
50 TIGR00932 2a37 transporter, mo 96.4 0.13 2.9E-06 56.5 17.5 109 832-940 4-114 (273)
51 PRK10929 putative mechanosensi 96.4 5.9 0.00013 52.3 46.7 17 290-306 216-232 (1109)
52 TIGR00698 conserved hypothetic 96.4 0.11 2.5E-06 59.5 16.8 139 842-982 29-176 (335)
53 PRK10669 putative cation:proto 96.1 0.23 5E-06 60.5 18.9 132 828-961 14-146 (558)
54 COG2855 Predicted membrane pro 96.1 0.11 2.4E-06 59.3 14.8 144 837-982 30-179 (334)
55 PRK03818 putative transporter; 95.7 0.11 2.4E-06 63.4 13.6 104 608-713 9-121 (552)
56 PRK11281 hypothetical protein; 95.6 12 0.00027 49.5 53.9 20 224-243 162-181 (1113)
57 COG0475 KefB Kef-type K+ trans 95.6 0.45 9.8E-06 55.8 17.4 116 606-723 224-340 (397)
58 COG0679 Predicted permeases [G 95.3 6.8 0.00015 44.5 32.7 135 844-981 167-307 (311)
59 TIGR03802 Asp_Ala_antiprt aspa 95.2 0.18 4E-06 61.6 13.3 124 607-737 12-144 (562)
60 TIGR03082 Gneg_AbrB_dup membra 95.2 0.28 6E-06 50.3 12.6 105 608-716 2-110 (156)
61 PRK05326 potassium/proton anti 95.1 0.46 1E-05 58.0 16.4 115 828-942 14-132 (562)
62 KOG0994 Extracellular matrix g 94.9 2.8 6.2E-05 54.0 21.9 53 260-312 1590-1642(1758)
63 TIGR00831 a_cpa1 Na+/H+ antipo 94.8 0.3 6.6E-06 59.2 13.5 116 829-944 7-123 (525)
64 KOG4673 Transcription factor T 94.8 2.3 4.9E-05 52.3 20.0 92 264-361 512-603 (961)
65 PF06826 Asp-Al_Ex: Predicted 94.8 0.39 8.4E-06 50.2 12.3 101 611-712 3-114 (169)
66 TIGR00844 c_cpa1 na(+)/h(+) an 94.7 0.55 1.2E-05 59.2 15.4 109 835-943 29-146 (810)
67 TIGR00210 gltS sodium--glutama 94.7 3.3 7.1E-05 48.9 21.0 154 605-760 223-388 (398)
68 PF03956 DUF340: Membrane prot 94.6 0.36 7.8E-06 51.4 11.6 128 630-765 2-134 (191)
69 PF05145 AmoA: Putative ammoni 94.2 0.65 1.4E-05 53.0 13.5 110 603-716 154-267 (318)
70 COG2985 Predicted permease [Ge 94.0 0.49 1.1E-05 56.2 12.1 128 607-739 10-147 (544)
71 TIGR00783 ccs citrate carrier 94.0 12 0.00027 43.4 23.1 116 843-958 203-327 (347)
72 PF01758 SBF: Sodium Bile acid 93.7 2.2 4.7E-05 44.7 15.3 98 659-762 2-104 (187)
73 TIGR00946 2a69 he Auxin Efflux 93.6 16 0.00034 41.4 29.4 132 845-980 182-319 (321)
74 TIGR02168 SMC_prok_B chromosom 93.6 15 0.00032 48.1 25.9 33 150-182 679-711 (1179)
75 COG3493 CitS Na+/citrate sympo 93.4 20 0.00043 42.1 30.5 158 603-768 48-229 (438)
76 KOG0994 Extracellular matrix g 93.2 4.3 9.4E-05 52.4 18.8 63 268-330 1584-1653(1758)
77 PRK04863 mukB cell division pr 93.2 3 6.5E-05 56.6 18.8 40 451-490 639-678 (1486)
78 PRK04972 putative transporter; 93.2 1.4 3E-05 54.1 14.7 100 608-714 15-121 (558)
79 TIGR03802 Asp_Ala_antiprt aspa 92.7 1.1 2.5E-05 54.9 13.2 106 628-735 417-530 (562)
80 TIGR03082 Gneg_AbrB_dup membra 92.5 4.4 9.5E-05 41.6 15.1 115 830-950 5-125 (156)
81 TIGR02169 SMC_prok_A chromosom 92.5 10 0.00022 49.7 22.3 48 268-315 294-341 (1164)
82 TIGR01625 YidE_YbjL_dupl AspT/ 92.3 1.8 3.8E-05 44.7 11.9 106 629-736 24-138 (154)
83 TIGR02680 conserved hypothetic 92.2 13 0.00028 50.5 23.0 123 110-244 705-833 (1353)
84 PRK04972 putative transporter; 92.2 2.7 5.9E-05 51.6 15.4 131 603-735 383-525 (558)
85 TIGR03136 malonate_biotin Na+- 92.1 29 0.00064 40.6 25.0 118 604-724 22-169 (399)
86 COG1346 LrgB Putative effector 92.1 8.2 0.00018 42.3 17.0 92 891-986 83-176 (230)
87 PRK03818 putative transporter; 92.0 3.7 7.9E-05 50.5 16.3 126 605-732 373-513 (552)
88 COG1196 Smc Chromosome segrega 91.9 8.4 0.00018 51.4 20.6 23 42-64 45-71 (1163)
89 PRK15178 Vi polysaccharide exp 91.8 8.6 0.00019 45.9 18.3 56 176-246 215-270 (434)
90 PRK12460 2-keto-3-deoxyglucona 91.6 1.5 3.2E-05 50.0 11.3 86 629-718 169-254 (312)
91 TIGR00783 ccs citrate carrier 91.5 2.2 4.7E-05 49.4 12.7 103 613-718 191-301 (347)
92 COG1196 Smc Chromosome segrega 91.5 8.9 0.00019 51.2 20.1 61 268-328 835-895 (1163)
93 TIGR03185 DNA_S_dndD DNA sulfu 91.4 21 0.00045 44.7 22.2 55 261-315 421-475 (650)
94 PF03956 DUF340: Membrane prot 90.7 1.6 3.4E-05 46.6 9.9 77 899-981 56-138 (191)
95 TIGR01109 Na_pump_decarbB sodi 90.0 43 0.00093 38.7 22.2 111 609-722 5-130 (354)
96 PF06008 Laminin_I: Laminin Do 89.8 24 0.00052 39.2 18.7 103 153-255 43-176 (264)
97 PF00261 Tropomyosin: Tropomyo 89.6 19 0.00042 39.4 17.5 168 150-325 59-226 (237)
98 PF05982 DUF897: Domain of unk 89.2 48 0.001 38.3 24.2 130 629-765 2-138 (327)
99 PF00038 Filament: Intermediat 89.2 7.9 0.00017 43.5 14.7 154 150-310 98-251 (312)
100 PF03977 OAD_beta: Na+-transpo 89.2 49 0.0011 38.4 28.2 114 607-723 5-131 (360)
101 TIGR02680 conserved hypothetic 89.1 65 0.0014 44.0 25.2 38 269-306 348-385 (1353)
102 COG5374 Uncharacterized conser 88.7 0.85 1.8E-05 47.8 5.8 51 274-324 142-192 (192)
103 PF05701 WEMBL: Weak chloropla 88.6 34 0.00074 41.9 20.4 56 282-345 372-427 (522)
104 PF03547 Mem_trans: Membrane t 87.8 58 0.0013 37.5 25.3 130 845-977 244-384 (385)
105 PF03616 Glt_symporter: Sodium 87.4 9.9 0.00021 44.5 14.3 122 607-728 227-356 (368)
106 PF12128 DUF3584: Protein of u 87.4 84 0.0018 42.5 24.5 59 274-332 606-664 (1201)
107 PRK04288 antiholin-like protei 86.9 53 0.0011 36.4 18.5 90 891-984 86-177 (232)
108 PF05276 SH3BP5: SH3 domain-bi 86.9 8.9 0.00019 42.4 12.6 156 150-319 16-172 (239)
109 PF03390 2HCT: 2-hydroxycarbox 86.8 77 0.0017 37.9 32.5 162 602-768 30-212 (414)
110 PF03390 2HCT: 2-hydroxycarbox 86.7 13 0.00029 44.1 14.7 111 607-719 252-369 (414)
111 PRK09903 putative transporter 86.5 64 0.0014 36.6 32.6 132 845-981 173-310 (314)
112 COG3180 AbrB Putative ammonia 86.5 7.6 0.00016 45.1 12.3 107 606-716 190-300 (352)
113 PHA02562 46 endonuclease subun 86.0 91 0.002 37.9 22.1 29 217-245 254-282 (562)
114 TIGR00808 malonate_madM malona 85.9 9.4 0.0002 41.2 11.7 107 602-710 14-133 (254)
115 TIGR00946 2a69 he Auxin Efflux 85.2 18 0.00038 41.0 14.6 115 619-736 175-290 (321)
116 COG2431 Predicted membrane pro 85.1 4 8.7E-05 45.8 8.9 88 628-720 108-200 (297)
117 PF05701 WEMBL: Weak chloropla 85.0 60 0.0013 39.9 19.7 52 265-316 278-329 (522)
118 KOG0996 Structural maintenance 85.0 24 0.00052 46.3 16.6 41 666-706 1175-1215(1293)
119 PF13514 AAA_27: AAA domain 84.8 73 0.0016 42.6 21.9 27 158-184 746-772 (1111)
120 PF04012 PspA_IM30: PspA/IM30 84.7 48 0.001 35.6 16.9 47 150-196 32-78 (221)
121 COG0025 NhaP NhaP-type Na+/H+ 84.6 13 0.00029 44.2 13.7 71 875-945 64-136 (429)
122 KOG1650 Predicted K+/H+-antipo 84.1 7.3 0.00016 49.7 11.9 105 655-761 310-416 (769)
123 PF06008 Laminin_I: Laminin Do 83.8 77 0.0017 35.2 23.0 19 273-291 151-169 (264)
124 COG5420 Uncharacterized conser 83.7 3.2 6.9E-05 36.7 5.8 52 295-346 5-62 (71)
125 PRK10698 phage shock protein P 83.6 58 0.0013 35.6 17.0 30 151-180 34-63 (222)
126 PF04172 LrgB: LrgB-like famil 83.3 59 0.0013 35.5 16.7 89 891-983 70-160 (215)
127 PRK11281 hypothetical protein; 83.1 21 0.00046 47.4 15.6 103 196-304 62-164 (1113)
128 COG4651 RosB Kef-type K+ trans 83.0 13 0.00029 42.4 11.8 115 828-943 14-130 (408)
129 PF00999 Na_H_Exchanger: Sodiu 83.0 0.7 1.5E-05 52.9 2.2 116 607-725 216-335 (380)
130 PRK04288 antiholin-like protei 83.0 82 0.0018 34.9 22.5 48 664-712 76-123 (232)
131 PF12128 DUF3584: Protein of u 82.7 88 0.0019 42.3 21.5 27 149-175 314-340 (1201)
132 COG3493 CitS Na+/citrate sympo 82.3 17 0.00036 42.7 12.5 119 602-722 264-392 (438)
133 COG1842 PspA Phage shock prote 82.2 57 0.0012 35.9 16.2 51 150-200 33-83 (225)
134 KOG0161 Myosin class II heavy 81.8 92 0.002 43.8 21.0 162 149-326 1523-1697(1930)
135 PRK04778 septation ring format 81.6 1.2E+02 0.0026 37.7 20.6 158 190-366 278-439 (569)
136 COG0786 GltS Na+/glutamate sym 81.3 46 0.001 39.4 15.8 123 605-727 226-356 (404)
137 PRK10711 hypothetical protein; 81.0 72 0.0016 35.3 16.4 90 891-984 81-172 (231)
138 PRK02224 chromosome segregatio 80.7 1.1E+02 0.0023 39.7 20.7 8 99-106 452-459 (880)
139 PF12718 Tropomyosin_1: Tropom 79.6 17 0.00036 37.2 10.4 61 269-329 15-75 (143)
140 KOG3826 Na+/H+ antiporter [Ino 79.0 2.2 4.9E-05 46.6 4.2 130 606-735 102-238 (252)
141 KOG0161 Myosin class II heavy 78.9 83 0.0018 44.3 19.2 196 150-345 1444-1680(1930)
142 PF12777 MT: Microtubule-bindi 78.9 13 0.00028 43.0 10.6 94 270-366 10-103 (344)
143 TIGR00634 recN DNA repair prot 78.8 38 0.00082 41.8 15.1 17 227-243 275-291 (563)
144 TIGR02977 phageshock_pspA phag 78.8 1E+02 0.0022 33.4 20.1 49 150-198 33-81 (219)
145 PF03977 OAD_beta: Na+-transpo 78.6 21 0.00045 41.4 11.6 106 874-982 68-174 (360)
146 PRK10476 multidrug resistance 78.2 26 0.00057 40.1 12.8 50 194-243 128-177 (346)
147 PF07888 CALCOCO1: Calcium bin 77.9 1E+02 0.0022 38.1 17.8 32 58-89 64-103 (546)
148 TIGR00659 conserved hypothetic 76.9 1.2E+02 0.0027 33.4 18.1 89 891-983 80-170 (226)
149 COG0679 Predicted permeases [G 76.8 1.4E+02 0.0031 34.0 20.7 107 625-734 167-275 (311)
150 PRK12472 hypothetical protein; 76.2 53 0.0011 39.8 14.5 100 214-354 221-320 (508)
151 TIGR03319 YmdA_YtgF conserved 75.8 2.1E+02 0.0045 35.3 20.7 22 509-531 274-295 (514)
152 PF05982 DUF897: Domain of unk 75.5 27 0.00058 40.4 11.5 104 630-737 184-289 (327)
153 COG3524 KpsE Capsule polysacch 75.4 66 0.0014 36.9 14.2 64 167-245 142-206 (372)
154 COG1346 LrgB Putative effector 75.2 1.4E+02 0.003 33.1 17.4 77 662-741 71-147 (230)
155 PF13593 DUF4137: SBF-like CPA 74.8 41 0.00089 38.5 13.0 89 846-936 6-98 (313)
156 TIGR00606 rad50 rad50. This fa 73.9 2.7E+02 0.0058 38.2 22.1 25 149-173 710-734 (1311)
157 PRK12704 phosphodiesterase; Pr 73.6 2.3E+02 0.005 35.0 19.6 15 615-630 346-360 (520)
158 PRK10869 recombination and rep 73.0 1.6E+02 0.0036 36.4 18.4 22 148-169 181-202 (553)
159 COG1579 Zn-ribbon protein, pos 73.0 1.6E+02 0.0035 32.8 20.9 67 268-334 89-155 (239)
160 TIGR00832 acr3 arsenical-resis 72.9 98 0.0021 35.7 15.5 67 881-949 50-125 (328)
161 PRK04863 mukB cell division pr 72.6 2E+02 0.0044 39.9 20.4 45 151-195 289-333 (1486)
162 COG3329 Predicted permease [Ge 72.3 90 0.002 36.0 14.3 110 626-740 16-132 (372)
163 PF08826 DMPK_coil: DMPK coile 72.0 29 0.00062 30.8 8.4 51 266-316 9-59 (61)
164 PRK02224 chromosome segregatio 71.7 3.1E+02 0.0067 35.6 25.5 45 150-194 323-367 (880)
165 TIGR02971 heterocyst_DevB ABC 71.4 1.2E+02 0.0026 34.2 15.8 18 347-364 188-205 (327)
166 KOG0971 Microtubule-associated 70.9 1.9E+02 0.0041 37.7 17.8 167 151-349 300-482 (1243)
167 PHA02557 22 prohead core prote 70.9 1.9E+02 0.0041 32.7 19.1 59 277-335 143-201 (271)
168 PRK04125 murein hydrolase regu 70.9 42 0.00092 34.4 10.6 99 603-706 10-116 (141)
169 PF00261 Tropomyosin: Tropomyo 70.8 1.7E+02 0.0037 32.1 20.6 152 149-322 9-167 (237)
170 PF13194 DUF4010: Domain of un 70.2 1.7E+02 0.0037 31.9 15.8 32 825-856 132-164 (211)
171 PRK03598 putative efflux pump 69.5 47 0.001 37.7 12.0 93 152-245 78-172 (331)
172 KOG0250 DNA repair protein RAD 69.3 2.7E+02 0.0058 37.1 19.3 163 149-326 256-438 (1074)
173 PF03547 Mem_trans: Membrane t 69.3 45 0.00098 38.4 11.9 99 850-949 12-115 (385)
174 PRK10263 DNA translocase FtsK; 69.0 1.4E+02 0.003 40.6 17.0 11 845-855 143-153 (1355)
175 TIGR03136 malonate_biotin Na+- 68.7 67 0.0015 37.8 12.7 107 874-982 104-211 (399)
176 PRK10476 multidrug resistance 68.3 99 0.0021 35.5 14.3 22 151-172 82-103 (346)
177 TIGR00840 b_cpa1 sodium/hydrog 68.0 74 0.0016 39.5 13.9 73 874-946 69-150 (559)
178 TIGR00998 8a0101 efflux pump m 67.6 72 0.0016 36.0 12.9 40 200-239 128-167 (334)
179 KOG1307 K+-dependent Ca2+/Na+ 67.4 9.2 0.0002 45.6 5.7 46 487-538 418-469 (588)
180 PF06160 EzrA: Septation ring 67.4 2.8E+02 0.0062 34.4 18.8 143 151-320 354-496 (560)
181 PF07888 CALCOCO1: Calcium bin 67.2 3.2E+02 0.007 34.0 25.3 34 282-315 262-295 (546)
182 COG1730 GIM5 Predicted prefold 66.6 1.2E+02 0.0026 31.4 12.8 100 218-317 23-143 (145)
183 TIGR01843 type_I_hlyD type I s 66.4 2.5E+02 0.0055 32.5 20.5 39 268-306 196-234 (423)
184 PF05278 PEARLI-4: Arabidopsis 65.8 1.9E+02 0.0042 32.7 15.2 38 268-305 214-251 (269)
185 COG3329 Predicted permease [Ge 65.6 56 0.0012 37.5 11.0 110 844-956 16-130 (372)
186 PF12777 MT: Microtubule-bindi 65.2 28 0.0006 40.3 9.1 50 262-311 215-264 (344)
187 PRK09903 putative transporter 64.7 1.2E+02 0.0026 34.4 14.0 108 625-736 172-280 (314)
188 TIGR00998 8a0101 efflux pump m 64.5 1.5E+02 0.0033 33.4 14.8 27 217-243 114-140 (334)
189 PRK09973 putative outer membra 64.4 18 0.00039 34.0 5.9 45 282-331 15-59 (85)
190 TIGR01005 eps_transp_fam exopo 64.2 3.1E+02 0.0067 35.1 18.8 23 267-289 243-265 (754)
191 PRK01658 holin-like protein; V 64.1 85 0.0018 31.4 11.0 99 603-706 7-113 (122)
192 KOG0979 Structural maintenance 63.9 2E+02 0.0044 37.9 16.5 58 137-201 163-220 (1072)
193 PRK15136 multidrug efflux syst 63.8 78 0.0017 37.2 12.6 91 151-245 95-185 (390)
194 COG2985 Predicted permease [Ge 63.3 32 0.00069 41.7 9.0 104 630-736 399-510 (544)
195 PF08317 Spc7: Spc7 kinetochor 63.0 2.8E+02 0.0062 31.9 16.6 76 268-358 209-284 (325)
196 COG1566 EmrA Multidrug resista 62.9 95 0.0021 36.4 12.8 89 151-243 87-176 (352)
197 PRK01821 hypothetical protein; 62.9 78 0.0017 32.2 10.6 99 603-706 12-118 (133)
198 PLN03223 Polycystin cation cha 61.9 27 0.00058 46.7 8.8 83 212-311 1542-1624(1634)
199 COG3883 Uncharacterized protei 61.4 34 0.00073 38.5 8.4 75 263-337 33-108 (265)
200 KOG0250 DNA repair protein RAD 60.4 4.1E+02 0.0089 35.5 18.5 30 468-497 607-637 (1074)
201 PF10174 Cast: RIM-binding pro 60.4 4.4E+02 0.0095 34.3 18.8 43 147-189 377-423 (775)
202 COG2610 GntT H+/gluconate symp 60.2 3.9E+02 0.0084 32.5 17.9 67 601-677 57-138 (442)
203 PRK10929 putative mechanosensi 59.9 2.7E+02 0.0059 37.6 17.4 92 196-297 47-138 (1109)
204 COG1566 EmrA Multidrug resista 59.7 69 0.0015 37.5 10.9 51 262-312 85-143 (352)
205 PF10174 Cast: RIM-binding pro 59.3 2.2E+02 0.0047 36.9 16.0 85 270-362 123-207 (775)
206 KOG4657 Uncharacterized conser 59.0 2.3E+02 0.005 31.4 13.7 74 267-343 85-164 (246)
207 PHA02562 46 endonuclease subun 58.9 1.3E+02 0.0027 36.7 13.6 32 204-235 166-198 (562)
208 PRK03598 putative efflux pump 58.9 1.4E+02 0.003 34.0 13.2 24 270-293 147-170 (331)
209 COG0385 Predicted Na+-dependen 58.8 86 0.0019 36.3 11.3 104 875-982 41-151 (319)
210 KOG2264 Exostosin EXT1L [Signa 58.7 59 0.0013 39.9 10.1 81 234-327 51-131 (907)
211 PRK10263 DNA translocase FtsK; 58.3 60 0.0013 43.8 11.1 14 844-857 63-76 (1355)
212 PRK10246 exonuclease subunit S 58.3 6E+02 0.013 34.1 24.0 9 279-287 367-375 (1047)
213 PF04728 LPP: Lipoprotein leuc 58.1 63 0.0014 28.3 7.6 48 282-329 3-50 (56)
214 COG0497 RecN ATPase involved i 58.0 2.2E+02 0.0047 35.5 15.1 28 147-174 180-207 (557)
215 PRK03947 prefoldin subunit alp 58.0 1.5E+02 0.0032 29.7 11.7 44 266-309 92-135 (140)
216 COG1380 Putative effector of m 57.8 97 0.0021 31.4 10.2 100 602-706 7-114 (128)
217 KOG0612 Rho-associated, coiled 57.7 4.3E+02 0.0094 35.8 18.0 55 158-212 488-544 (1317)
218 PF13166 AAA_13: AAA domain 57.5 3.7E+02 0.0079 33.9 17.7 141 150-329 324-464 (712)
219 PF05276 SH3BP5: SH3 domain-bi 57.5 77 0.0017 35.2 10.3 96 261-360 7-143 (239)
220 PF05335 DUF745: Protein of un 57.4 2.8E+02 0.006 29.9 16.7 142 166-322 39-184 (188)
221 PRK15477 oxaloacetate decarbox 57.2 4E+02 0.0087 31.7 24.2 54 843-896 282-336 (433)
222 COG3264 Small-conductance mech 57.2 5.7E+02 0.012 33.5 23.0 46 502-549 285-330 (835)
223 PF08826 DMPK_coil: DMPK coile 56.8 1E+02 0.0022 27.4 8.9 16 206-221 2-17 (61)
224 COG3263 NhaP-type Na+/H+ and K 56.8 1.3E+02 0.0029 36.4 12.4 60 883-942 73-133 (574)
225 PF13514 AAA_27: AAA domain 56.7 3.4E+02 0.0073 36.5 17.9 88 266-361 602-689 (1111)
226 PRK15475 oxaloacetate decarbox 55.9 4.2E+02 0.0091 31.6 24.2 54 843-896 282-336 (433)
227 TIGR00606 rad50 rad50. This fa 55.8 6.7E+02 0.015 34.5 20.7 34 275-308 319-352 (1311)
228 PF04156 IncA: IncA protein; 55.7 2.6E+02 0.0057 29.2 14.4 33 280-312 156-188 (191)
229 PF09325 Vps5: Vps5 C terminal 55.6 2.9E+02 0.0062 29.6 14.5 82 218-310 121-202 (236)
230 PRK00409 recombination and DNA 55.4 2E+02 0.0044 37.2 15.0 35 209-243 493-527 (782)
231 COG1784 Predicted membrane pro 55.2 4.3E+02 0.0093 31.4 16.9 26 836-861 351-376 (395)
232 PF08838 DUF1811: Protein of u 55.2 14 0.0003 35.8 3.6 27 297-323 8-34 (102)
233 PF08317 Spc7: Spc7 kinetochor 54.9 3.9E+02 0.0084 30.8 19.7 35 276-310 210-244 (325)
234 PRK15476 oxaloacetate decarbox 54.8 4.4E+02 0.0095 31.4 24.2 54 843-896 282-336 (433)
235 PRK15136 multidrug efflux syst 53.8 2.3E+02 0.005 33.4 14.2 24 216-239 125-148 (390)
236 TIGR01541 tape_meas_lam_C phag 53.7 4.2E+02 0.0091 30.9 19.5 72 159-242 3-74 (332)
237 PF10168 Nup88: Nuclear pore c 53.4 88 0.0019 40.0 11.2 57 290-346 580-646 (717)
238 TIGR02338 gimC_beta prefoldin, 53.0 2E+02 0.0044 27.8 11.3 40 267-306 66-105 (110)
239 TIGR02209 ftsL_broad cell divi 52.8 52 0.0011 29.9 6.9 46 272-317 21-66 (85)
240 PF05529 Bap31: B-cell recepto 51.1 92 0.002 32.9 9.4 37 270-306 156-192 (192)
241 TIGR01000 bacteriocin_acc bact 51.0 4.9E+02 0.011 31.2 16.6 23 343-365 296-318 (457)
242 PRK03918 chromosome segregatio 50.9 6.7E+02 0.015 32.5 21.7 23 290-312 260-282 (880)
243 PF05262 Borrelia_P83: Borreli 50.1 1.9E+02 0.0042 35.4 12.8 17 149-165 193-209 (489)
244 TIGR00793 kdgT 2-keto-3-deoxyg 49.9 60 0.0013 37.3 8.1 75 629-707 174-248 (314)
245 PRK10698 phage shock protein P 49.3 3.1E+02 0.0067 30.1 13.3 48 270-317 87-134 (222)
246 PF06160 EzrA: Septation ring 49.0 6.2E+02 0.013 31.5 19.2 60 190-249 274-337 (560)
247 PF10168 Nup88: Nuclear pore c 48.9 6.7E+02 0.015 32.4 17.9 35 279-313 636-670 (717)
248 PF06120 Phage_HK97_TLTM: Tail 48.8 4.8E+02 0.01 30.2 18.0 135 173-313 38-172 (301)
249 KOG1962 B-cell receptor-associ 48.7 1.3E+02 0.0028 33.1 10.1 49 268-316 151-206 (216)
250 PRK15396 murein lipoprotein; P 48.4 45 0.00098 31.0 5.6 42 282-328 16-57 (78)
251 PF05667 DUF812: Protein of un 48.1 4.5E+02 0.0098 33.1 15.9 39 145-183 325-363 (594)
252 COG2433 Uncharacterized conser 48.1 53 0.0011 40.7 7.7 49 269-317 416-464 (652)
253 TIGR02231 conserved hypothetic 47.8 90 0.0019 38.1 9.9 94 273-366 69-173 (525)
254 TIGR02231 conserved hypothetic 47.7 1.7E+02 0.0037 35.8 12.2 49 262-310 125-173 (525)
255 PRK14011 prefoldin subunit alp 47.0 2.3E+02 0.0049 29.2 11.1 87 218-304 20-124 (144)
256 PF05262 Borrelia_P83: Borreli 46.9 3.1E+02 0.0067 33.7 13.8 20 176-195 206-225 (489)
257 COG1269 NtpI Archaeal/vacuolar 46.5 7.3E+02 0.016 31.6 23.0 18 842-859 526-543 (660)
258 COG3883 Uncharacterized protei 46.5 83 0.0018 35.5 8.4 57 270-326 33-89 (265)
259 TIGR01109 Na_pump_decarbB sodi 46.4 85 0.0018 36.5 8.6 106 874-982 62-174 (354)
260 PF04977 DivIC: Septum formati 46.3 50 0.0011 29.3 5.7 35 274-308 16-50 (80)
261 TIGR00659 conserved hypothetic 46.0 4.6E+02 0.0099 29.1 21.0 71 664-737 70-140 (226)
262 PRK14471 F0F1 ATP synthase sub 45.8 2.4E+02 0.0051 29.1 11.2 90 271-363 49-142 (164)
263 PF11727 ISG65-75: Invariant s 45.1 1.6E+02 0.0034 33.4 10.6 74 273-346 57-139 (286)
264 TIGR00400 mgtE Mg2+ transporte 45.1 4.5E+02 0.0097 31.6 15.0 18 671-688 345-362 (449)
265 PF04018 DUF368: Domain of unk 45.1 5E+02 0.011 29.3 18.5 32 606-640 65-96 (257)
266 PF00769 ERM: Ezrin/radixin/mo 45.0 4.8E+02 0.01 29.1 15.3 26 448-474 174-199 (246)
267 PRK10712 PTS system fructose-s 45.0 1.2E+02 0.0026 37.8 10.3 29 831-860 301-329 (563)
268 cd01118 ArsB_permease Anion pe 44.9 5.7E+02 0.012 29.9 19.8 24 615-639 10-33 (416)
269 PRK12911 bifunctional preprote 44.9 2.4E+02 0.0052 38.5 13.2 27 710-736 1293-1319(1403)
270 PF01920 Prefoldin_2: Prefoldi 44.9 2.5E+02 0.0055 26.1 10.5 72 231-305 28-99 (106)
271 PRK08578 preprotein translocas 44.6 4.9E+02 0.011 29.6 14.5 26 793-818 263-288 (292)
272 PTZ00491 major vault protein; 44.4 8.4E+02 0.018 32.0 17.5 21 279-299 742-762 (850)
273 PF05082 Rop-like: Rop-like; 44.0 68 0.0015 29.0 5.9 58 297-358 3-64 (66)
274 PF01970 TctA: Tripartite tric 43.9 6.5E+02 0.014 30.3 20.0 62 798-860 348-410 (419)
275 PRK11637 AmiB activator; Provi 43.8 6.3E+02 0.014 30.1 22.3 25 285-309 201-225 (428)
276 PF02447 GntP_permease: GntP f 43.5 6.8E+02 0.015 30.4 21.1 65 601-675 56-135 (441)
277 PF02355 SecD_SecF: Protein ex 43.3 4.4E+02 0.0095 28.1 15.5 26 792-817 163-188 (189)
278 PF10186 Atg14: UV radiation r 42.9 5E+02 0.011 28.6 16.6 37 274-310 62-98 (302)
279 KOG0240 Kinesin (SMY1 subfamil 42.7 2.8E+02 0.006 34.6 12.4 73 281-356 413-485 (607)
280 TIGR00841 bass bile acid trans 42.6 2.5E+02 0.0054 31.6 11.7 100 878-981 14-120 (286)
281 cd07605 I-BAR_IMD Inverse (I)- 42.2 5.1E+02 0.011 28.6 19.6 125 145-297 17-141 (223)
282 smart00039 CRF corticotropin-r 42.1 35 0.00076 27.9 3.4 29 148-176 9-39 (40)
283 PRK07352 F0F1 ATP synthase sub 42.0 4.2E+02 0.0091 27.6 12.5 88 273-363 62-153 (174)
284 PF06810 Phage_GP20: Phage min 41.5 1.7E+02 0.0036 30.4 9.3 50 268-317 20-72 (155)
285 COG4942 Membrane-bound metallo 41.4 7.2E+02 0.016 30.1 22.2 35 282-316 210-244 (420)
286 PRK06231 F0F1 ATP synthase sub 41.4 4E+02 0.0087 28.8 12.5 44 320-363 136-182 (205)
287 PF03812 KdgT: 2-keto-3-deoxyg 41.2 80 0.0017 36.4 7.5 74 629-706 174-247 (314)
288 PF05278 PEARLI-4: Arabidopsis 41.2 5.9E+02 0.013 29.0 14.4 49 262-310 215-263 (269)
289 TIGR00293 prefoldin, archaeal 41.0 1.2E+02 0.0026 29.7 7.9 39 275-313 86-124 (126)
290 TIGR00914 2A0601 heavy metal e 41.0 8.3E+02 0.018 32.8 17.8 26 962-987 1016-1041(1051)
291 PRK15476 oxaloacetate decarbox 41.0 51 0.0011 38.8 5.9 75 874-949 133-212 (433)
292 PRK15477 oxaloacetate decarbox 41.0 51 0.0011 38.8 5.9 75 874-949 133-212 (433)
293 PRK09973 putative outer membra 40.8 96 0.0021 29.3 6.6 47 283-329 25-71 (85)
294 PF02040 ArsB: Arsenical pump 40.8 7.3E+02 0.016 30.0 20.0 37 726-762 117-153 (423)
295 PF01758 SBF: Sodium Bile acid 40.4 3.2E+02 0.007 28.6 11.5 65 884-948 10-79 (187)
296 PF11839 DUF3359: Protein of u 40.4 1.4E+02 0.003 29.0 7.7 42 294-335 33-74 (96)
297 KOG4403 Cell surface glycoprot 40.4 3E+02 0.0065 33.1 11.8 67 147-236 258-327 (575)
298 PRK15475 oxaloacetate decarbox 40.0 54 0.0012 38.6 5.9 75 874-949 133-212 (433)
299 PF02183 HALZ: Homeobox associ 39.9 60 0.0013 27.0 4.6 35 279-313 6-43 (45)
300 PRK14855 nhaA pH-dependent sod 39.9 2.1E+02 0.0046 34.4 10.9 21 874-894 68-88 (423)
301 TIGR01843 type_I_hlyD type I s 39.7 6.5E+02 0.014 29.1 21.6 22 343-364 251-272 (423)
302 PRK04778 septation ring format 39.4 8.5E+02 0.018 30.3 18.6 34 150-185 258-291 (569)
303 PRK09824 PTS system beta-gluco 38.7 9.4E+02 0.02 30.6 24.2 29 696-724 158-186 (627)
304 PF05911 DUF869: Plant protein 38.5 9.7E+02 0.021 31.3 17.0 123 150-310 47-169 (769)
305 COG4858 Uncharacterized membra 38.4 3.2E+02 0.007 29.6 10.7 43 597-640 96-138 (226)
306 KOG1937 Uncharacterized conser 38.3 4.3E+02 0.0093 32.1 12.7 41 274-314 388-428 (521)
307 PRK11578 macrolide transporter 38.1 1.9E+02 0.0041 33.5 10.2 17 221-237 116-132 (370)
308 PF04899 MbeD_MobD: MbeD/MobD 37.9 2.6E+02 0.0057 25.5 8.7 63 231-314 5-67 (70)
309 PRK15445 arsenical pump membra 37.9 7.5E+02 0.016 29.2 21.8 17 726-742 118-134 (427)
310 PF14362 DUF4407: Domain of un 37.8 3.6E+02 0.0078 30.4 12.1 20 969-988 273-292 (301)
311 PRK15374 pathogenicity island 37.7 4.1E+02 0.0088 33.1 12.7 32 181-212 142-173 (593)
312 PRK00106 hypothetical protein; 37.4 9.2E+02 0.02 30.1 22.8 43 267-309 110-152 (535)
313 KOG1760 Molecular chaperone Pr 37.3 1.5E+02 0.0032 30.0 7.6 32 291-322 83-116 (131)
314 PF03788 LrgA: LrgA family; I 37.0 2.3E+02 0.0051 27.1 8.8 83 616-701 4-93 (96)
315 PRK04125 murein hydrolase regu 36.2 3.7E+02 0.0081 27.7 10.6 31 878-908 69-101 (141)
316 TIGR01069 mutS2 MutS2 family p 36.1 6.7E+02 0.015 32.6 15.3 40 271-310 518-557 (771)
317 TIGR00634 recN DNA repair prot 36.0 9.4E+02 0.02 29.8 16.9 22 154-175 167-188 (563)
318 COG1883 OadB Na+-transporting 35.9 6.8E+02 0.015 29.0 13.3 95 626-723 40-146 (375)
319 PF03207 OspD: Borrelia outer 35.9 5.5E+02 0.012 27.2 13.9 58 149-206 56-115 (254)
320 PTZ00121 MAEBL; Provisional 35.9 1.4E+03 0.031 32.0 21.7 174 154-350 1174-1368(2084)
321 PF05684 DUF819: Protein of un 35.4 5.4E+02 0.012 30.5 13.3 53 873-925 56-108 (378)
322 PF12325 TMF_TATA_bd: TATA ele 35.3 1.4E+02 0.003 29.9 7.2 47 269-315 17-63 (120)
323 PRK09173 F0F1 ATP synthase sub 35.1 5.1E+02 0.011 26.5 12.3 89 272-363 44-136 (159)
324 PF05817 Ribophorin_II: Oligos 34.6 95 0.0021 39.2 7.3 88 625-736 544-632 (636)
325 PRK14854 nhaA pH-dependent sod 34.4 2.3E+02 0.005 33.7 9.9 21 874-894 61-81 (383)
326 cd00632 Prefoldin_beta Prefold 34.4 2E+02 0.0044 27.5 8.1 29 283-311 71-99 (105)
327 KOG0288 WD40 repeat protein Ti 34.3 6.9E+02 0.015 30.1 13.5 101 207-355 13-117 (459)
328 PRK09343 prefoldin subunit bet 33.9 4.8E+02 0.01 25.9 11.0 41 268-308 71-111 (121)
329 PF06181 DUF989: Protein of un 33.8 5.5E+02 0.012 29.6 12.3 37 876-912 231-268 (300)
330 cd07658 F-BAR_NOSTRIN The F-BA 33.6 6.9E+02 0.015 27.6 15.7 35 301-335 169-203 (239)
331 KOG0980 Actin-binding protein 33.6 1.3E+03 0.027 30.6 17.4 75 283-369 495-571 (980)
332 PF12794 MscS_TM: Mechanosensi 33.6 8.2E+02 0.018 28.4 17.7 116 866-981 125-251 (340)
333 PRK00409 recombination and DNA 33.6 3.9E+02 0.0085 34.7 12.7 50 266-315 518-567 (782)
334 PF04111 APG6: Autophagy prote 33.6 2.7E+02 0.0059 32.1 10.3 11 338-348 126-136 (314)
335 PRK07720 fliJ flagellar biosyn 33.4 5.1E+02 0.011 26.0 11.8 133 202-343 6-139 (146)
336 KOG2391 Vacuolar sorting prote 33.3 2.5E+02 0.0055 32.8 9.7 89 268-363 235-328 (365)
337 PF05911 DUF869: Plant protein 32.8 1E+03 0.022 31.1 15.8 62 267-328 595-656 (769)
338 KOG0977 Nuclear envelope prote 32.7 1.1E+03 0.024 29.6 16.6 23 332-354 204-226 (546)
339 TIGR02865 spore_II_E stage II 32.5 1.2E+03 0.027 30.2 20.7 11 848-858 225-235 (764)
340 PF14932 HAUS-augmin3: HAUS au 32.2 6.7E+02 0.014 28.0 12.8 99 211-325 27-125 (256)
341 KOG1278 Endosomal membrane pro 32.2 3.7E+02 0.0081 33.5 11.3 205 686-922 340-544 (628)
342 PRK15335 type III secretion sy 32.2 5.7E+02 0.012 26.2 11.2 36 278-313 76-111 (147)
343 PRK14853 nhaA pH-dependent sod 31.9 5.5E+02 0.012 31.1 12.6 21 873-893 66-86 (423)
344 PF12329 TMF_DNA_bd: TATA elem 31.7 84 0.0018 28.7 4.7 41 275-315 33-73 (74)
345 PHA03246 large tegument protei 31.5 1.5E+03 0.032 33.5 17.3 52 266-317 1312-1374(3095)
346 cd00632 Prefoldin_beta Prefold 31.5 1.2E+02 0.0027 29.0 6.1 44 266-309 61-104 (105)
347 PF04129 Vps52: Vps52 / Sac2 f 31.4 1.6E+02 0.0035 36.1 8.5 57 262-318 8-64 (508)
348 KOG0240 Kinesin (SMY1 subfamil 31.4 8.1E+02 0.017 30.8 13.9 32 146-177 353-384 (607)
349 PRK14856 nhaA pH-dependent sod 30.9 3.4E+02 0.0074 32.9 10.7 21 874-894 73-93 (438)
350 TIGR02921 PEP_integral PEP-CTE 30.9 1E+03 0.022 30.2 14.5 84 860-944 69-155 (952)
351 PF11855 DUF3375: Protein of u 30.9 37 0.00081 41.2 3.0 53 286-339 141-193 (478)
352 PRK09578 periplasmic multidrug 30.7 1.6E+02 0.0035 34.3 8.1 17 223-239 113-129 (385)
353 PF05266 DUF724: Protein of un 30.3 1.6E+02 0.0034 31.7 7.2 55 274-328 130-184 (190)
354 PF05565 Sipho_Gp157: Siphovir 30.2 1.1E+02 0.0023 31.9 5.8 35 277-311 49-83 (162)
355 PRK11578 macrolide transporter 30.0 3.6E+02 0.0079 31.2 10.8 41 273-313 97-137 (370)
356 TIGR01625 YidE_YbjL_dupl AspT/ 29.9 1.7E+02 0.0037 30.4 7.1 86 844-929 21-116 (154)
357 PRK05771 V-type ATP synthase s 29.6 1.9E+02 0.004 36.5 8.8 33 279-311 90-122 (646)
358 KOG2189 Vacuolar H+-ATPase V0 29.5 83 0.0018 40.2 5.5 39 274-312 91-129 (829)
359 PF14362 DUF4407: Domain of un 29.4 8.6E+02 0.019 27.4 14.9 27 151-177 78-104 (301)
360 PF00873 ACR_tran: AcrB/AcrD/A 29.4 4.1E+02 0.0089 35.3 12.3 41 679-721 353-393 (1021)
361 PF04632 FUSC: Fusaric acid re 29.4 9.1E+02 0.02 30.0 14.8 36 509-548 120-156 (650)
362 PRK10478 putative PTS system f 29.2 2.9E+02 0.0062 32.7 9.6 14 845-858 101-114 (359)
363 KOG0979 Structural maintenance 29.1 1.6E+03 0.034 30.3 18.4 142 167-319 260-415 (1072)
364 PRK09174 F0F1 ATP synthase sub 29.0 7.5E+02 0.016 26.8 12.1 24 155-185 105-128 (204)
365 PF10186 Atg14: UV radiation r 28.9 8.1E+02 0.018 26.9 18.5 19 274-292 90-108 (302)
366 PF05008 V-SNARE: Vesicle tran 28.9 1.5E+02 0.0033 26.6 5.9 44 265-308 22-66 (79)
367 PF10481 CENP-F_N: Cenp-F N-te 28.9 9.3E+02 0.02 27.6 15.5 97 147-243 38-134 (307)
368 TIGR03794 NHPM_micro_HlyD NHPM 28.9 1E+03 0.022 28.1 15.9 15 157-171 98-112 (421)
369 PF09726 Macoilin: Transmembra 28.7 1.4E+03 0.03 29.6 20.2 26 152-177 422-447 (697)
370 PRK00888 ftsB cell division pr 28.7 1E+02 0.0022 30.0 4.9 35 276-310 28-62 (105)
371 COG3748 Predicted membrane pro 28.7 3.1E+02 0.0068 32.0 9.3 38 875-912 227-265 (407)
372 PRK03947 prefoldin subunit alp 28.6 1.3E+02 0.0028 30.1 6.0 46 272-317 91-136 (140)
373 PF08287 DASH_Spc19: Spc19; I 28.5 1.7E+02 0.0037 30.4 6.9 22 287-308 132-153 (153)
374 COG1842 PspA Phage shock prote 28.3 4.4E+02 0.0096 29.1 10.4 75 268-345 31-105 (225)
375 PRK10577 iron-hydroxamate tran 28.3 1.4E+03 0.029 29.3 23.7 23 619-642 392-414 (668)
376 PRK05759 F0F1 ATP synthase sub 28.0 5.9E+02 0.013 25.7 10.7 80 274-353 41-125 (156)
377 COG3371 Predicted membrane pro 28.0 5.7E+02 0.012 27.5 10.6 57 625-683 75-131 (181)
378 KOG1965 Sodium/hydrogen exchan 27.7 2.5E+02 0.0055 35.0 9.1 68 876-945 104-180 (575)
379 PRK13022 secF preprotein trans 27.6 9.5E+02 0.021 27.3 14.4 26 793-818 260-285 (289)
380 TIGR00771 DcuC c4-dicarboxylat 27.5 4.8E+02 0.01 30.9 11.2 59 601-673 255-313 (388)
381 PRK15030 multidrug efflux syst 27.5 1.9E+02 0.0041 34.0 8.0 13 225-237 117-129 (397)
382 KOG1962 B-cell receptor-associ 27.5 1.7E+02 0.0036 32.3 6.8 55 273-327 149-203 (216)
383 COG0711 AtpF F0F1-type ATP syn 27.4 6.7E+02 0.014 26.0 11.0 72 268-342 44-116 (161)
384 PF06826 Asp-Al_Ex: Predicted 27.4 6E+02 0.013 26.8 10.7 89 842-930 21-116 (169)
385 KOG0982 Centrosomal protein Nu 27.4 9.4E+02 0.02 29.2 13.1 95 227-322 299-393 (502)
386 COG3879 Uncharacterized protei 27.2 1.9E+02 0.0041 32.4 7.2 31 286-316 54-84 (247)
387 PRK08475 F0F1 ATP synthase sub 27.1 5.7E+02 0.012 26.7 10.5 26 319-344 109-134 (167)
388 PHA02047 phage lambda Rz1-like 27.1 1.8E+02 0.0039 28.2 6.1 30 285-314 37-66 (101)
389 TIGR01005 eps_transp_fam exopo 26.9 1.4E+03 0.031 29.2 20.4 23 221-243 247-269 (754)
390 PRK10246 exonuclease subunit S 26.8 1.7E+03 0.037 30.0 20.9 27 281-307 723-749 (1047)
391 PRK15396 murein lipoprotein; P 26.7 2.5E+02 0.0054 26.2 6.8 44 286-329 29-72 (78)
392 KOG1899 LAR transmembrane tyro 26.6 1.4E+03 0.03 29.3 14.6 88 146-237 102-191 (861)
393 PF15233 SYCE1: Synaptonemal c 26.4 1.5E+02 0.0032 30.2 5.7 40 271-310 9-48 (134)
394 KOG4673 Transcription factor T 26.3 6.6E+02 0.014 32.2 12.0 34 545-583 619-652 (961)
395 TIGR03794 NHPM_micro_HlyD NHPM 26.3 8.9E+02 0.019 28.6 13.3 18 345-362 234-251 (421)
396 PF04156 IncA: IncA protein; 26.1 7.5E+02 0.016 25.8 11.4 41 271-311 77-117 (191)
397 PRK01821 hypothetical protein; 25.7 7.2E+02 0.016 25.4 10.6 30 878-907 71-102 (133)
398 PF09930 DUF2162: Predicted tr 25.6 9.5E+02 0.021 26.6 13.7 94 654-748 67-168 (224)
399 PF05875 Ceramidase: Ceramidas 25.5 4.2E+02 0.009 29.3 9.8 25 530-554 61-85 (262)
400 cd00890 Prefoldin Prefoldin is 25.5 5.5E+02 0.012 24.8 9.6 43 265-307 84-126 (129)
401 PF08614 ATG16: Autophagy prot 25.5 7.4E+02 0.016 26.3 11.3 44 267-310 115-158 (194)
402 PF05384 DegS: Sensor protein 25.5 8.1E+02 0.018 25.8 15.4 53 268-320 77-129 (159)
403 KOG2718 Na+-bile acid cotransp 25.4 5.4E+02 0.012 30.6 10.9 106 659-768 117-225 (371)
404 PRK13729 conjugal transfer pil 25.1 1.6E+02 0.0036 35.8 6.8 69 489-571 209-279 (475)
405 PRK14127 cell division protein 25.1 2.1E+02 0.0046 28.2 6.5 35 272-306 34-68 (109)
406 TIGR02473 flagell_FliJ flagell 25.1 6.6E+02 0.014 24.6 12.6 45 271-315 71-115 (141)
407 COG1579 Zn-ribbon protein, pos 25.0 2.5E+02 0.0054 31.4 7.7 52 266-317 29-80 (239)
408 COG1390 NtpE Archaeal/vacuolar 24.8 7.9E+02 0.017 26.5 11.3 45 175-219 16-61 (194)
409 PRK07353 F0F1 ATP synthase sub 24.8 6.9E+02 0.015 24.7 11.3 73 270-345 45-118 (140)
410 PRK12704 phosphodiesterase; Pr 24.7 1.4E+03 0.031 28.3 20.4 28 268-295 103-130 (520)
411 PRK09765 PTS system 2-O-a-mann 24.6 3E+02 0.0064 34.8 9.3 15 845-859 379-393 (631)
412 PF09730 BicD: Microtubule-ass 24.6 1.6E+03 0.035 29.1 16.5 32 153-184 284-315 (717)
413 PRK13455 F0F1 ATP synthase sub 24.5 8.2E+02 0.018 25.7 11.3 88 273-363 70-161 (184)
414 PRK12933 secD preprotein trans 24.5 1.5E+03 0.033 28.7 15.0 130 789-921 438-596 (604)
415 PRK10884 SH3 domain-containing 24.4 3.8E+02 0.0082 29.2 8.9 38 271-311 96-133 (206)
416 TIGR01069 mutS2 MutS2 family p 24.4 5.2E+02 0.011 33.6 11.5 14 523-536 708-721 (771)
417 COG2268 Uncharacterized protei 24.3 1.1E+03 0.025 29.5 13.6 51 308-359 401-455 (548)
418 PF14235 DUF4337: Domain of un 24.2 2.2E+02 0.0048 29.7 6.8 39 279-317 70-108 (157)
419 PF10136 SpecificRecomb: Site- 24.2 1.6E+03 0.035 28.8 24.8 23 838-860 521-545 (643)
420 KOG4398 Predicted coiled-coil 24.1 2.8E+02 0.0062 31.6 7.8 60 270-329 21-80 (359)
421 KOG0996 Structural maintenance 24.1 2E+03 0.043 29.9 18.8 156 150-313 407-573 (1293)
422 TIGR00927 2A1904 K+-dependent 24.0 1.8E+02 0.0039 38.4 7.1 28 164-192 469-496 (1096)
423 PF11570 E2R135: Coiled-coil r 23.9 8E+02 0.017 25.2 12.9 88 220-323 38-125 (136)
424 PF10205 KLRAQ: Predicted coil 23.8 2E+02 0.0043 28.2 5.8 48 265-312 23-70 (102)
425 PF02447 GntP_permease: GntP f 23.8 1.4E+03 0.03 27.9 26.8 23 617-640 14-36 (441)
426 cd07647 F-BAR_PSTPIP The F-BAR 23.6 5.3E+02 0.012 28.2 10.1 35 302-336 152-186 (239)
427 PRK15030 multidrug efflux syst 23.6 2.8E+02 0.0061 32.6 8.4 22 222-243 152-173 (397)
428 TIGR02894 DNA_bind_RsfA transc 23.6 4.7E+02 0.01 27.6 8.9 36 280-315 102-137 (161)
429 COG4026 Uncharacterized protei 23.4 2.3E+02 0.0049 31.4 6.8 32 282-313 156-187 (290)
430 PF06570 DUF1129: Protein of u 23.3 9.3E+02 0.02 25.8 11.6 11 709-719 178-188 (206)
431 PRK13460 F0F1 ATP synthase sub 23.3 8.6E+02 0.019 25.3 12.4 92 267-360 53-144 (173)
432 smart00283 MA Methyl-accepting 23.2 9E+02 0.02 25.5 17.1 135 180-336 1-142 (262)
433 PF04111 APG6: Autophagy prote 23.2 5.7E+02 0.012 29.5 10.5 36 274-309 49-84 (314)
434 KOG0432 Valyl-tRNA synthetase 23.1 3.4E+02 0.0073 35.6 9.1 24 288-311 929-952 (995)
435 PF00769 ERM: Ezrin/radixin/mo 23.0 1.1E+03 0.023 26.3 15.5 50 284-333 84-133 (246)
436 smart00787 Spc7 Spc7 kinetocho 22.9 1.2E+03 0.026 27.0 17.1 39 272-310 222-260 (312)
437 PRK09561 nhaA pH-dependent sod 22.7 3E+02 0.0066 32.8 8.2 21 874-894 64-84 (388)
438 CHL00118 atpG ATP synthase CF0 22.6 8.4E+02 0.018 25.0 11.3 27 319-345 109-135 (156)
439 PF06696 Strep_SA_rep: Strepto 22.6 1.5E+02 0.0033 22.0 3.7 23 279-301 2-24 (25)
440 TIGR02977 phageshock_pspA phag 22.6 1E+03 0.022 25.8 19.1 70 226-316 64-133 (219)
441 PRK14475 F0F1 ATP synthase sub 22.5 8.8E+02 0.019 25.1 11.1 78 267-346 47-124 (167)
442 TIGR01614 PME_inhib pectineste 22.4 5.7E+02 0.012 26.1 9.5 74 217-314 95-169 (178)
443 PF06818 Fez1: Fez1; InterPro 22.2 5.3E+02 0.012 28.2 9.3 42 268-309 52-93 (202)
444 PRK09560 nhaA pH-dependent sod 22.1 2.9E+02 0.0062 33.0 7.9 21 874-894 64-84 (389)
445 TIGR00915 2A0602 The (Largely 22.1 2E+03 0.044 29.3 18.4 31 964-994 1010-1041(1044)
446 PHA01750 hypothetical protein 22.1 2.6E+02 0.0056 25.4 5.7 42 268-311 30-71 (75)
447 PRK05771 V-type ATP synthase s 22.0 1.7E+03 0.036 28.2 19.6 37 274-310 92-128 (646)
448 PF02996 Prefoldin: Prefoldin 21.9 1.9E+02 0.0042 27.8 5.6 45 265-309 74-118 (120)
449 KOG0526 Nucleosome-binding fac 21.9 62 0.0013 39.5 2.5 7 480-486 533-539 (615)
450 PF05103 DivIVA: DivIVA protei 21.7 58 0.0013 31.8 2.0 72 276-351 19-95 (131)
451 PRK14161 heat shock protein Gr 21.7 3.6E+02 0.0079 28.7 7.9 56 265-320 9-64 (178)
452 PF11992 DUF3488: Domain of un 21.6 5.2E+02 0.011 29.7 9.9 15 657-671 78-92 (325)
453 PF11839 DUF3359: Protein of u 21.6 4.2E+02 0.0092 25.7 7.5 73 284-359 16-88 (96)
454 PF01032 FecCD: FecCD transpor 21.6 1.3E+03 0.027 26.6 13.5 17 625-641 42-58 (311)
455 PRK14148 heat shock protein Gr 21.5 6.2E+02 0.013 27.5 9.7 86 252-341 5-96 (195)
456 KOG4643 Uncharacterized coiled 21.5 2.1E+03 0.046 29.2 19.8 46 264-309 477-522 (1195)
457 KOG2435 Uncharacterized conser 21.4 71 0.0015 35.9 2.6 66 9-85 156-223 (323)
458 PRK14162 heat shock protein Gr 21.3 3.2E+02 0.0068 29.6 7.4 17 353-369 125-141 (194)
459 PRK12472 hypothetical protein; 21.2 1.4E+03 0.03 28.3 13.2 30 270-299 227-256 (508)
460 PF10211 Ax_dynein_light: Axon 21.2 8.7E+02 0.019 26.0 10.7 32 285-316 123-154 (189)
461 TIGR00366 conserved hypothetic 21.2 1.6E+03 0.034 27.5 14.7 24 964-987 191-214 (438)
462 TIGR03321 alt_F1F0_F0_B altern 21.2 1.1E+03 0.024 25.9 12.4 94 267-362 42-138 (246)
463 PF07321 YscO: Type III secret 21.0 9.6E+02 0.021 25.0 15.4 109 212-335 12-127 (152)
464 PRK12911 bifunctional preprote 21.0 5.5E+02 0.012 35.3 10.8 37 701-737 949-990 (1403)
465 PRK13021 secF preprotein trans 20.9 1.3E+03 0.028 26.6 12.6 36 700-735 166-205 (297)
466 PF06305 DUF1049: Protein of u 20.8 93 0.002 27.1 2.9 23 286-308 45-67 (68)
467 COG4026 Uncharacterized protei 20.7 3.2E+02 0.0069 30.3 7.2 27 283-309 136-162 (290)
468 COG3006 MukF Uncharacterized p 20.6 2.6E+02 0.0057 32.0 6.8 81 223-303 125-220 (440)
469 cd07656 F-BAR_srGAP The F-BAR 20.5 1.1E+03 0.023 26.3 11.6 83 278-360 113-216 (241)
470 PHA03247 large tegument protei 20.5 3.1E+03 0.068 30.9 18.0 98 266-370 1565-1671(3151)
471 PF00430 ATP-synt_B: ATP synth 20.5 7.8E+02 0.017 23.8 9.9 21 322-342 89-109 (132)
472 TIGR02359 thiW thiW protein. L 20.5 1E+03 0.022 25.1 10.8 15 628-642 34-48 (160)
473 PF07926 TPR_MLP1_2: TPR/MLP1/ 20.3 8.7E+02 0.019 24.3 17.0 45 150-194 5-49 (132)
474 PRK09859 multidrug efflux syst 20.2 2.2E+02 0.0047 33.3 6.5 19 151-169 95-113 (385)
475 PRK14726 bifunctional preprote 20.1 9.4E+02 0.02 31.8 12.5 24 793-816 805-828 (855)
476 PRK09859 multidrug efflux syst 20.1 3.6E+02 0.0078 31.5 8.3 18 223-240 111-128 (385)
477 PRK05274 2-keto-3-deoxyglucona 20.0 1.9E+02 0.004 33.7 5.8 74 630-707 177-250 (326)
478 PF02667 SCFA_trans: Short cha 20.0 1.7E+03 0.036 27.4 16.3 23 964-986 194-216 (453)
No 1
>PLN03159 cation/H(+) antiporter 15; Provisional
Probab=100.00 E-value=5.8e-49 Score=483.17 Aligned_cols=417 Identities=17% Similarity=0.287 Sum_probs=339.0
Q ss_pred HhcchhhhhhhcccCccchhchhH-HHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHhhcccccccccC------
Q 001810 577 VKKLPKRIKKLLDMLPEQEINEEE-ASLFDVLWLLLASVIFVPIFQKIPGGSPVLGYLAAGILIGPYGLSIIRH------ 649 (1010)
Q Consensus 577 ~~~~~~~~~~~~~~~~~~~~~~~~-~~Ll~illLLl~A~ilg~Ll~Rl~gLP~vVG~ILaGILLGP~gLglI~~------ 649 (1010)
|...++..+++++...+ |..++. .++++++++++++.+++++++|+ |+|+++|+|++||++||+++|.++.
T Consensus 19 c~~~~~~~s~g~~~g~~-pl~~~l~~~llql~lil~~a~l~~~ll~rl-~~P~ivgeIlaGIlLGPs~lg~i~~~~~~~f 96 (832)
T PLN03159 19 CYAPMMITTNGIWQGDN-PLDFSLPLFILQLTLVVVTTRLLVFILKPF-RQPRVISEILGGVILGPSVLGQSEVFANTIF 96 (832)
T ss_pred cccCCCccCCcccccCC-cccchHHHHHHHHHHHHHHHHHHHHHHHhc-CCChhHHHHHHHHhcCHhhhCcChhhhhhcC
Confidence 65333444556666533 333333 67789999999999999999999 9999999999999999999998742
Q ss_pred ----chhHHHHHHHHHHHHHHHHhhcCChhHHHhchhhHHHHHHHHHHHHHHHHHHHHHHhcCC------ChHHHHHHhh
Q 001810 650 ----VHGTKAIAEFGVVFLLFNIGLELSVERLSSMKKYVFGLGSAQVLVTAVVVGLVAHFVSGL------PGPASIVIGN 719 (1010)
Q Consensus 650 ----~~~le~LaeLGLi~LLF~aGLEidl~~Lrr~~k~il~LAlv~vllt~~~Vg~la~~l~Gl------s~~~ALLLGa 719 (1010)
.+.++.++++|++++||.+|+|+|++.+|+++++.+.+++.++++++ ++|+++.+++++ ....++++|+
T Consensus 97 p~~~~~~l~~la~lGlillmFliGLE~Dl~~lr~~~k~a~~ia~~~~ilpf-~lg~~~~~~l~~~~~~~~~~~~~l~~g~ 175 (832)
T PLN03159 97 PLRSVMVLETMANLGLLYFLFLVGVEMDISVIRRTGKKALAIAIAGMALPF-CIGLAFSFIFHQVSRNVHQGTFILFLGV 175 (832)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHcCcHHHHHhcchHHHHHHHHHHHHHH-HHHHHHHHHHhhcccccchhHHHHHHHH
Confidence 23579999999999999999999999999999999999999998864 455544333232 1345688999
Q ss_pred hcccCcHHHHHHHHHHcCCCCChhhHHHHHHHHhHHHHHHHHHHHHHhhcCCCCCCCccHHHHHHHHHHHHHHHHHHHHH
Q 001810 720 GLALSSTAVVLQVLQERGESTSRHGRATFSVLLFQDLAVVVLLILIPLISPNSSKGGVGFQAIAEALGVAAVKAAVAITA 799 (1010)
Q Consensus 720 ILSaTSpAVvv~IL~elg~l~s~vGrLlL~~SllnDi~aIVLfali~~ls~~~s~g~isl~~I~~~Lg~~ll~vilgiii 799 (1010)
++|.|++++++++|+|+|+++++.|+++++.++++|+++|++++++..+..... .... .++. ++. .++
T Consensus 176 alS~Ts~pVv~riL~Elkll~s~~GrlaLsaavv~Dl~~~ilLav~~~l~~~~~---~~~~----~l~~-~l~----~~~ 243 (832)
T PLN03159 176 ALSVTAFPVLARILAEIKLINTELGRIAMSAALVNDMCAWILLALAIALAENDS---TSLA----SLWV-LLS----SVA 243 (832)
T ss_pred HHHHhhHHHHHHHHHHcCcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---cchh----HHHH-HHH----HHH
Confidence 999999999999999999999999999999999999999999987655543211 1111 1111 111 112
Q ss_pred HHHHHHHHHHHHHHHHHhhc-----chhHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHcCCCchhHHHHHHHHhH-
Q 001810 800 IIAGGRLLLRPIYKQIAENQ-----NAEIFSANTLLVILGTSLLTARAGLSMALGAFLAGLLLAETEFSLQVESDIAPY- 873 (1010)
Q Consensus 800 ~llvg~~llr~llr~i~~~~-----~~ei~l~ltLll~f~~~llAe~lGlSgvLGAFiAGLiLs~~~~~~~L~e~l~~i- 873 (1010)
.+++..++.||++.|+.++. ..+.++.++++++++++++++.+|+|+++|||++|+++|+.+.+..+.++++++
T Consensus 244 f~~~~~~v~r~~~~~~~r~~~~~~~~~e~~v~~il~~vl~~a~lae~~Gl~~ilGAFlaGl~lp~~~~~~~l~ekle~~~ 323 (832)
T PLN03159 244 FVLFCFYVVRPGIWWIIRRTPEGETFSEFYICLILTGVMISGFITDAIGTHSVFGAFVFGLVIPNGPLGVTLIEKLEDFV 323 (832)
T ss_pred HHHHHHHHHHHHHHHHHHhCcCCCCcccchhHHHHHHHHHHHHHHHHhCccHHHHHHHHhhccCCcchHHHHHHHHHHHH
Confidence 22223345566666665432 234555667777888899999999999999999999999988889999999998
Q ss_pred HHHHHHHHHHHhhcccChhhhhhh--hhhHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHhhHHHHHHHHHHHH
Q 001810 874 RGLLLGLFFMTVGMSIDPKLLLSN--FPVITGALGLLIGGKTILVALVGRLFGVSVISAIRTGLLLAPGGEFAFVAFGEA 951 (1010)
Q Consensus 874 ~~~f~PLFFVlIGl~Ldl~~L~~~--~~~iilillvvil~K~l~v~l~~~~~gl~~real~IGl~LaprG~vaLVLa~iA 951 (1010)
.++|+|+||+++|+++|+..+... |+.+++++++.+++|+++++++++++++++++++.+|++|++||+++++++.++
T Consensus 324 ~~lflPlFFv~vGl~idl~~l~~~~~~~~~~~liv~a~~gK~~g~~l~a~~~g~~~~eal~lG~lm~~kG~~~Lii~~ig 403 (832)
T PLN03159 324 SGLLLPLFFAISGLKTNVTKIQGPATWGLLVLVIIMASAGKIMGTIIIAFFYTMPFREGITLGFLMNTKGLVEMIVLNVG 403 (832)
T ss_pred HHHHHHHHHHHhhheeeHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 799999999999999999887543 445556667788999999999999999999999999999999999999999999
Q ss_pred HhCCCCChhh--H-HHHHHHHHHHHHHHHHHHHhhcccccccccccccCCCCCCCCCccc
Q 001810 952 VNQVCFQPHT--V-FLIPNGISIYLQLIMIFFFFNCGLLIQHGTKCLTASPLESQMPVLD 1008 (1010)
Q Consensus 952 ls~GiIs~~~--l-VvlvVVlS~IItPiL~~l~~~~~r~~~~~~~tl~~~~~eseLriL~ 1008 (1010)
++.|+++++. . ++.++++|++++|++.++|+|.+|+..|+++++++.++++|||||+
T Consensus 404 ~~~gvi~~~~f~~lVl~avl~T~i~~Plv~~ly~p~rk~~~~~~r~i~~~~~~~elriL~ 463 (832)
T PLN03159 404 RDQEVLDDESFAVMVLVAVAMTALITPVVTVVYRPARRLVGYKRRTIQRSKHDAELRMLV 463 (832)
T ss_pred HhcCccCchhhhHHHHHHHHHHHHHHHHHHHHhCHHhhhccccccccccCCCCCceeEEE
Confidence 9999999988 3 4455678999999999999999999999999999999999999996
No 2
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=100.00 E-value=1e-47 Score=460.35 Aligned_cols=375 Identities=39% Similarity=0.629 Sum_probs=332.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHhhcccccccccCchhHHHHHHHHHHHHHHHHhhcCChhHHHhc
Q 001810 601 ASLFDVLWLLLASVIFVPIFQKIPGGSPVLGYLAAGILIGPYGLSIIRHVHGTKAIAEFGVVFLLFNIGLELSVERLSSM 680 (1010)
Q Consensus 601 ~~Ll~illLLl~A~ilg~Ll~Rl~gLP~vVG~ILaGILLGP~gLglI~~~~~le~LaeLGLi~LLF~aGLEidl~~Lrr~ 680 (1010)
..++++++++.++.+++++++|+ ++|+++|||++|+++||+++|++++.+.++.++++|++++||.+|+|+|++.+|+.
T Consensus 5 ~~l~~~~~~l~~a~i~~~l~~rl-~lp~vlgyilaGillGP~~lg~i~~~~~i~~laelGvv~LlF~iGLEl~~~~l~~~ 83 (621)
T PRK03562 5 HTLIQALIYLGAAVLIVPIAVRL-GLGSVLGYLIAGCIIGPWGLRLVTDVESILHFAEFGVVLMLFVIGLELDPQRLWKL 83 (621)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh-CCChHHHHHHHHHHhCcccccCCCCHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHH
Confidence 56888999999999999999999 99999999999999999999999888889999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHhhhcccCcHHHHHHHHHHcCCCCChhhHHHHHHHHhHHHHHHH
Q 001810 681 KKYVFGLGSAQVLVTAVVVGLVAHFVSGLPGPASIVIGNGLALSSTAVVLQVLQERGESTSRHGRATFSVLLFQDLAVVV 760 (1010)
Q Consensus 681 ~k~il~LAlv~vllt~~~Vg~la~~l~Gls~~~ALLLGaILSaTSpAVvv~IL~elg~l~s~vGrLlL~~SllnDi~aIV 760 (1010)
++.++.++..++++++++ ++.+.+++|++|..++++|.+++.|||++++++++|++..+++.|+.+++.++++|+++|+
T Consensus 84 ~~~~~~~g~~qv~~~~~~-~~~~~~~~g~~~~~al~ig~~la~SStaiv~~~L~e~~~l~t~~G~~~l~~ll~~Dl~~i~ 162 (621)
T PRK03562 84 RRSIFGGGALQMVACGGL-LGLFCMLLGLRWQVALLIGLGLALSSTAIAMQAMNERNLMVTQMGRSAFAILLFQDIAAIP 162 (621)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccccCchHHHHHHHHHHHHHHHHH
Confidence 999999999999887644 4455667899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHH
Q 001810 761 LLILIPLISPNSSKGGVGFQAIAEALGVAAVKAAVAITAIIAGGRLLLRPIYKQIAENQNAEIFSANTLLVILGTSLLTA 840 (1010)
Q Consensus 761 Lfali~~ls~~~s~g~isl~~I~~~Lg~~ll~vilgiii~llvg~~llr~llr~i~~~~~~ei~l~ltLll~f~~~llAe 840 (1010)
++++++.+...... .+.. .++..++..++.+++++++++|+.+|+++|+.+....+.++...++++++++++++
T Consensus 163 ll~l~~~l~~~~~~--~~~~----~~~~~~~~~~~~~~~~~~~g~~l~~~l~~~~~~~~~~e~~~~~~l~lv~~~a~la~ 236 (621)
T PRK03562 163 LVAMIPLLAASGAS--TTLG----AFALSALKVAGALALVVLGGRYVTRPALRFVARSGLREVFTAVALFLVFGFGLLME 236 (621)
T ss_pred HHHHHHHHccCCCc--cchh----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHH
Confidence 99887766542111 1111 12222233444455566677889999999998877888888888889999999999
Q ss_pred HhchhHHHHHHHHHHHcCCCchhHHHHHHHHhHHHHHHHHHHHHhhcccChhhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 001810 841 RAGLSMALGAFLAGLLLAETEFSLQVESDIAPYRGLLLGLFFMTVGMSIDPKLLLSNFPVITGALGLLIGGKTILVALVG 920 (1010)
Q Consensus 841 ~lGlSgvLGAFiAGLiLs~~~~~~~L~e~l~~i~~~f~PLFFVlIGl~Ldl~~L~~~~~~iilillvvil~K~l~v~l~~ 920 (1010)
.+|+|+++|||++|+++++.++++++++.++++.++|+|+||+.+||++|+..+...|+.++.++++.+++|++++++.+
T Consensus 237 ~~Gls~~lGAFlAGl~l~~~~~~~~le~~i~pf~~lll~lFFi~vG~~id~~~l~~~~~~il~~~~~~~~~K~~~~~~~~ 316 (621)
T PRK03562 237 EVGLSMALGAFLAGVLLASSEYRHALESDIEPFKGLLLGLFFIAVGMSIDFGTLLENPLRILILLLGFLAIKIAMLWLLA 316 (621)
T ss_pred HhCccHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999998876666666777788999999999999
Q ss_pred HhhCCChHHHHHHHHHHhhHHHHHHHHHHHHHhCCCCChhh--HHHHHHHHHHHHHHHHHHHHhh
Q 001810 921 RLFGVSVISAIRTGLLLAPGGEFAFVAFGEAVNQVCFQPHT--VFLIPNGISIYLQLIMIFFFFN 983 (1010)
Q Consensus 921 ~~~gl~~real~IGl~LaprG~vaLVLa~iAls~GiIs~~~--lVvlvVVlS~IItPiL~~l~~~ 983 (1010)
+++|+++++++.+|++|+++|+++++++.++.+.|+++++. .+++++++|++++|++.+++.+
T Consensus 317 ~~~g~~~~~a~~~gl~L~~~Gef~~vl~~~a~~~~~i~~~~~~~lv~~v~lS~~~tP~l~~~~~~ 381 (621)
T PRK03562 317 RPLGVPRKQRRWFAVLLGQGGEFAFVVFGAAQMANVLEPEWAKLLTLAVALSMAATPLLLVLLDR 381 (621)
T ss_pred HHhCCCHhHHHHHHHHHhccccHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 99999999999999999999999999999999999999999 6778889999999999887543
No 3
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=100.00 E-value=1.3e-46 Score=449.72 Aligned_cols=375 Identities=39% Similarity=0.663 Sum_probs=330.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHhhcccccccccCchhHHHHHHHHHHHHHHHHhhcCChhHH
Q 001810 598 EEEASLFDVLWLLLASVIFVPIFQKIPGGSPVLGYLAAGILIGPYGLSIIRHVHGTKAIAEFGVVFLLFNIGLELSVERL 677 (1010)
Q Consensus 598 ~~~~~Ll~illLLl~A~ilg~Ll~Rl~gLP~vVG~ILaGILLGP~gLglI~~~~~le~LaeLGLi~LLF~aGLEidl~~L 677 (1010)
+....+.++++++.++.+.+++++|+ ++|+++||+++|+++||+++|++++.+.+..++++|++++||.+|+|+|++.+
T Consensus 2 ~~~~~~~~~~~~l~~a~~~~~l~~rl-~~p~ilg~ilaGillGP~~lg~i~~~~~i~~laelGvv~LLF~iGLel~~~~l 80 (601)
T PRK03659 2 EGSDLLTAGVLFLFAAVVAVPLAQRL-GIGAVLGYLLAGIAIGPWGLGFISDVDEILHFSELGVVFLMFIIGLELNPSKL 80 (601)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHh-CCChHHHHHHHHHHhccccccCCCcHHHHHHHHHHHHHHHHHHHHhcCCHHHH
Confidence 34566788899999999999999999 99999999999999999999999888888999999999999999999999999
Q ss_pred HhchhhHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHhhhcccCcHHHHHHHHHHcCCCCChhhHHHHHHHHhHHHH
Q 001810 678 SSMKKYVFGLGSAQVLVTAVVVGLVAHFVSGLPGPASIVIGNGLALSSTAVVLQVLQERGESTSRHGRATFSVLLFQDLA 757 (1010)
Q Consensus 678 rr~~k~il~LAlv~vllt~~~Vg~la~~l~Gls~~~ALLLGaILSaTSpAVvv~IL~elg~l~s~vGrLlL~~SllnDi~ 757 (1010)
|+.++.++.++..++++|+++++.+ .+++|++|..++++|++++.||+++++++++|++..+++.|++.++..+++|+.
T Consensus 81 ~~~~~~~~~~g~~~v~~t~~~~~~~-~~~~g~~~~~a~~~g~~la~SSTaiv~~iL~e~~~~~t~~G~~~l~vll~~Di~ 159 (601)
T PRK03659 81 WQLRRSIFGVGAAQVLLSAAVLAGL-LMLTDFSWQAAVVGGIGLAMSSTAMALQLMREKGMNRSESGQLGFSVLLFQDLA 159 (601)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHccCHHHHHHHHHHHHHHHHHHHHHHHHHcccccCchHHHHHHHHHHHHHH
Confidence 9999999999999999887655554 445799999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHH
Q 001810 758 VVVLLILIPLISPNSSKGGVGFQAIAEALGVAAVKAAVAITAIIAGGRLLLRPIYKQIAENQNAEIFSANTLLVILGTSL 837 (1010)
Q Consensus 758 aIVLfali~~ls~~~s~g~isl~~I~~~Lg~~ll~vilgiii~llvg~~llr~llr~i~~~~~~ei~l~ltLll~f~~~l 837 (1010)
+++++++++.+..... +...+. .+ +..++.+++.+++++++.+|+++|+.+....+.++...+++++++++
T Consensus 160 ~i~ll~l~~~l~~~~~-~~~~~~----~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~l~~vl~~a~ 230 (601)
T PRK03659 160 VIPALALVPLLAGSAD-EHFDWM----KI----GMKVLAFAGMLIGGRYLLRPLFRFIAASGVREVFTAAALLLVLGSAL 230 (601)
T ss_pred HHHHHHHHHHHhcCCC-cchHHH----HH----HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHH
Confidence 9999988766654321 111111 11 11122333445567888999999998777788888888888999999
Q ss_pred HHHHhchhHHHHHHHHHHHcCCCchhHHHHHHHHhHHHHHHHHHHHHhhcccChhhhhhhhhhHHHHHHHHHHHHHHHHH
Q 001810 838 LTARAGLSMALGAFLAGLLLAETEFSLQVESDIAPYRGLLLGLFFMTVGMSIDPKLLLSNFPVITGALGLLIGGKTILVA 917 (1010)
Q Consensus 838 lAe~lGlSgvLGAFiAGLiLs~~~~~~~L~e~l~~i~~~f~PLFFVlIGl~Ldl~~L~~~~~~iilillvvil~K~l~v~ 917 (1010)
+++.+|+|+++|||++|+++++.++++++++.++++.++|.|+||+.+||++|+..+...|+.++.++++.+++|+++++
T Consensus 231 l~~~~Gls~~LGAFlaGl~l~~s~~~~~l~~~i~pf~~lll~lFFi~vGm~id~~~l~~~~~~il~~~~~~l~~K~~~~~ 310 (601)
T PRK03659 231 FMDALGLSMALGTFIAGVLLAESEYRHELEIAIEPFKGLLLGLFFISVGMALNLGVLYTHLLWVLISVVVLVAVKGLVLY 310 (601)
T ss_pred HHHHhCccHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999998877777777777888999999999
Q ss_pred HHHHhhCCChHHHHHHHHHHhhHHHHHHHHHHHHHhCCCCChhh--HHHHHHHHHHHHHHHHHHHHhh
Q 001810 918 LVGRLFGVSVISAIRTGLLLAPGGEFAFVAFGEAVNQVCFQPHT--VFLIPNGISIYLQLIMIFFFFN 983 (1010)
Q Consensus 918 l~~~~~gl~~real~IGl~LaprG~vaLVLa~iAls~GiIs~~~--lVvlvVVlS~IItPiL~~l~~~ 983 (1010)
+.++++|+++++++.+|++|+|+|+++++++..+.+.|+++++. .+++++++|++++|++.+++.+
T Consensus 311 ~~~~~~g~~~~~al~~g~~L~~~Gef~~vl~~~a~~~g~i~~~~~~~lv~~v~ls~~~tP~l~~~~~~ 378 (601)
T PRK03659 311 LLARLYGLRSSERMQFAGVLSQGGEFAFVLFSAASSQRLLQGDQMALLLVVVTLSMMTTPLLMKLIDK 378 (601)
T ss_pred HHHHHhCCCHHHHHHHHHHHhccccHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 99999999999999999999999999999999999999999988 6788999999999999988655
No 4
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=100.00 E-value=2.7e-44 Score=426.57 Aligned_cols=379 Identities=30% Similarity=0.473 Sum_probs=315.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHhhcccccccccCchhHHHHHHHHHHHHHHHHhhcCChhHHHhc
Q 001810 601 ASLFDVLWLLLASVIFVPIFQKIPGGSPVLGYLAAGILIGPYGLSIIRHVHGTKAIAEFGVVFLLFNIGLELSVERLSSM 680 (1010)
Q Consensus 601 ~~Ll~illLLl~A~ilg~Ll~Rl~gLP~vVG~ILaGILLGP~gLglI~~~~~le~LaeLGLi~LLF~aGLEidl~~Lrr~ 680 (1010)
..+..+.++++++.+++.+++|+ ++|+++|||++|+++||+++|++++.+.++.++++|++++||.+|+|+|++.+++.
T Consensus 6 ~~~~~~~~~l~~a~~~~~l~~rl-~~P~ivg~IlaGillGp~~lg~~~~~~~~~~la~lGli~llF~~Gle~d~~~l~~~ 84 (558)
T PRK10669 6 PLITTIVGGLVLAFILGMLANRL-RISPLVGYLLAGVLAGPFTPGFVADTKLAPELAELGVILLMFGVGLHFSLKDLMAV 84 (558)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHc-CCCHHHHHHHHHHhhCccccccccchHHHHHHHHHHHHHHHHHhHhcCCHHHHHHH
Confidence 45666788889999999999999 99999999999999999999998877889999999999999999999999999998
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHhhhcccCcHHHHHHHHHHcCCCCChhhHHHHHHHHhHHHHHHH
Q 001810 681 KKYVFGLGSAQVLVTAVVVGLVAHFVSGLPGPASIVIGNGLALSSTAVVLQVLQERGESTSRHGRATFSVLLFQDLAVVV 760 (1010)
Q Consensus 681 ~k~il~LAlv~vllt~~~Vg~la~~l~Gls~~~ALLLGaILSaTSpAVvv~IL~elg~l~s~vGrLlL~~SllnDi~aIV 760 (1010)
++..+..++.+++++ ++++++.++++|+++..++++|++++.||+++++++++|++..+++.|+++++.++++|+.+++
T Consensus 85 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~al~lg~~ls~tS~~vv~~~L~e~~~l~s~~G~~~l~~~~~~Dl~~i~ 163 (558)
T PRK10669 85 KSIAIPGAIAQIAVA-TLLGMALSAVLGWSLMTGIVFGLCLSTASTVVLLRALEERQLIDSQRGQIAIGWLIVEDLVMVL 163 (558)
T ss_pred hhHHHHHHHHHHHHH-HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCcchHHHHHHHHHHHHHHHH
Confidence 877666667776654 4566777778899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHH-HH
Q 001810 761 LLILIPLISPNSSKGGVGFQAIAEALGVAAVKAAVAITAIIAGGRLLLRPIYKQIAENQNAEIFSANTLLVILGTSL-LT 839 (1010)
Q Consensus 761 Lfali~~ls~~~s~g~isl~~I~~~Lg~~ll~vilgiii~llvg~~llr~llr~i~~~~~~ei~l~ltLll~f~~~l-lA 839 (1010)
++.++..+......+..+.......+...++..++.+++.+++++++.+|+.++..+....+.++..++++++++++ .+
T Consensus 164 ~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~l~~l~~~l~~a~~~~ 243 (558)
T PRK10669 164 TLVLLPAVAGMMEQGDVGFATLAVDLGITIGKVIAFIAIMMLVGRRLVPWILARSAATGSRELFTLSVLALALGIAFGAV 243 (558)
T ss_pred HHHHHHHHhcccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHH
Confidence 88776554432111111111111122222233333333444556666777777776655667776666777777765 46
Q ss_pred HHhchhHHHHHHHHHHHcCCCchhHHHHHHHHhHHHHHHHHHHHHhhcccChhhhhhhhhhHHHHHHHHHHHHHHHHHHH
Q 001810 840 ARAGLSMALGAFLAGLLLAETEFSLQVESDIAPYRGLLLGLFFMTVGMSIDPKLLLSNFPVITGALGLLIGGKTILVALV 919 (1010)
Q Consensus 840 e~lGlSgvLGAFiAGLiLs~~~~~~~L~e~l~~i~~~f~PLFFVlIGl~Ldl~~L~~~~~~iilillvvil~K~l~v~l~ 919 (1010)
+.+|+|+++|||++|+++++.++++++.+...++.++|.|+||+.+|+++|+..+...++.++.++++.+++|++++++.
T Consensus 244 ~~lGls~~lGAflaGl~l~~~~~~~~~~~~~~~~~~~f~plFFv~~G~~~d~~~l~~~~~~~~~~~~~~~v~K~~~~~~~ 323 (558)
T PRK10669 244 ELFDVSFALGAFFAGMVLNESELSHRAAHDTLPLRDAFAVLFFVSVGMLFDPMILIQQPLAVLATLAIIVFGKSLAAFFL 323 (558)
T ss_pred HHcCccHHHHHHHHHHHHhCChhHHHHHHHHhhHHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999888888888888899999999999999999999887666556667777889999999999
Q ss_pred HHhhCCChHHHHHHHHHHhhHHHHHHHHHHHHHhCCCCChhh--HHHHHHHHHHHHHHHHHHHH
Q 001810 920 GRLFGVSVISAIRTGLLLAPGGEFAFVAFGEAVNQVCFQPHT--VFLIPNGISIYLQLIMIFFF 981 (1010)
Q Consensus 920 ~~~~gl~~real~IGl~LaprG~vaLVLa~iAls~GiIs~~~--lVvlvVVlS~IItPiL~~l~ 981 (1010)
++++|+++|+++.+|++|+++|+++++++.++++.|+++++. .+++++++|++++|+++++.
T Consensus 324 ~~~~g~~~~~a~~~gl~l~~~Gef~lii~~~~~~~gii~~~~~~~~v~~~~~t~~~~P~l~~~~ 387 (558)
T PRK10669 324 VRLFGHSRRTALTIAASLAQIGEFAFILAGLGMALNLLPQAGQNLVLAGAILSIMLNPVLFTLL 387 (558)
T ss_pred HHHhCCChhhHHHHHHHHhcccchHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999 77888899999999998774
No 5
>COG0475 KefB Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.4e-42 Score=394.67 Aligned_cols=367 Identities=38% Similarity=0.625 Sum_probs=307.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHhhcccccccc-cCchhHHHHHHHHHHHHHHHHhhcCChhHHH
Q 001810 600 EASLFDVLWLLLASVIFVPIFQKIPGGSPVLGYLAAGILIGPYGLSII-RHVHGTKAIAEFGVVFLLFNIGLELSVERLS 678 (1010)
Q Consensus 600 ~~~Ll~illLLl~A~ilg~Ll~Rl~gLP~vVG~ILaGILLGP~gLglI-~~~~~le~LaeLGLi~LLF~aGLEidl~~Lr 678 (1010)
...+.++.++++++.+++++++|+ ++|+++||+++|+++||.+++.+ .+.+.+++++++|++++||.+|+|+|++.+|
T Consensus 5 ~~~l~~~~iiL~~a~i~~~l~~rl-~lp~vlg~llaGiilGp~~~~~~~~~~~~i~~laelGvi~LlF~~GLE~~~~~l~ 83 (397)
T COG0475 5 SLILLQLLILLLVAVILGPLFKRL-GLPPVLGYLLAGIILGPWGLLLIIESSEIIELLAELGVVFLLFLIGLEFDLERLK 83 (397)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHc-CCchHHHHHHHHHhcCcccccccCCchHHHHHHHHHhHHHHHHHHHHCcCHHHHH
Confidence 456888999999999999999999 99999999999999999655544 4667889999999999999999999999999
Q ss_pred hchhh-HHHHHHHHHHHHHHHHHHHHHH-hcCCChHHHHHHhhhcccCcHHHHHHHHHHcCCCCChhhHHHHHHHHhHHH
Q 001810 679 SMKKY-VFGLGSAQVLVTAVVVGLVAHF-VSGLPGPASIVIGNGLALSSTAVVLQVLQERGESTSRHGRATFSVLLFQDL 756 (1010)
Q Consensus 679 r~~k~-il~LAlv~vllt~~~Vg~la~~-l~Gls~~~ALLLGaILSaTSpAVvv~IL~elg~l~s~vGrLlL~~SllnDi 756 (1010)
+++++ .+..+..++.++ +.++....+ ++|+++..++++|.++++||+++++++++|+|..+++.|+++++.++++|+
T Consensus 84 ~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~g~~~~~al~lg~~l~~sS~~i~~~iL~e~~~~~~~~g~~~l~~~i~~Di 162 (397)
T COG0475 84 KVGRSVGLGVAQVGLTAP-FLLGLLLLLGILGLSLIAALFLGAALALSSTAIVLKILMELGLLKTREGQLILGALVFDDI 162 (397)
T ss_pred HhchhhhhhHHHHHHHHH-HHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHH
Confidence 99999 555555555543 244433333 589999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHH
Q 001810 757 AVVVLLILIPLISPNSSKGGVGFQAIAEALGVAAVKAAVAITAIIAGGRLLLRPIYKQIAENQNAEIFSANTLLVILGTS 836 (1010)
Q Consensus 757 ~aIVLfali~~ls~~~s~g~isl~~I~~~Lg~~ll~vilgiii~llvg~~llr~llr~i~~~~~~ei~l~ltLll~f~~~ 836 (1010)
.++++++++..+....+.. ... +...+....+..++.+..++++.+|+.|++.+.+..+.++..+++++++++
T Consensus 163 ~~i~lLai~~~l~~~g~~~---~~~----~~~~~~~~~~f~~~~l~~g~~l~~~~~r~~~~~~~~e~~~~~~l~i~l~~a 235 (397)
T COG0475 163 AAILLLAIVPALAGGGSGS---VGF----ILGLLLAILAFLALLLLLGRYLLPPLFRRVAKTESSELFILFVLLLVLGAA 235 (397)
T ss_pred HHHHHHHHHHHHccCCCcc---HhH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHH
Confidence 9999999888776542211 111 122222333334444455788999999999887788888889999999999
Q ss_pred HHHHHhchhHHHHHHHHHHHcCCCchh-HHHHHHHHhHHH-HHHHHHHHHhhcccChhhhhhhhhhHHHHHHHHHHHHHH
Q 001810 837 LLTARAGLSMALGAFLAGLLLAETEFS-LQVESDIAPYRG-LLLGLFFMTVGMSIDPKLLLSNFPVITGALGLLIGGKTI 914 (1010)
Q Consensus 837 llAe~lGlSgvLGAFiAGLiLs~~~~~-~~L~e~l~~i~~-~f~PLFFVlIGl~Ldl~~L~~~~~~iilillvvil~K~l 914 (1010)
++++.+|+|+++|||+||+++++.+++ ++++++++++.+ +|.|+||+.+|+++|++.+..+++.+++++.+.+++|++
T Consensus 236 ~l~e~~gls~ilGAFlaGl~ls~~~~~~~~l~~~i~~~~~~~fiplFFi~vG~~~dl~~l~~~~~~~l~~~~~~i~~K~~ 315 (397)
T COG0475 236 YLAELLGLSMILGAFLAGLLLSESEYRKHELEEKIEPFGDGLFIPLFFISVGMSLDLGVLLENLLLILLLVALAILGKIL 315 (397)
T ss_pred HHHHHhChhHHHHHHHHHHHhcccccchHHHHHHHHhHHhHHHHHHHHHHhhHHcCHHHHhccHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999988 799999999977 999999999999999999998887788888999999999
Q ss_pred HHHHHHHhhCCChHHHHHHHHHHhhHHHHHHHHHHHHHhCCCCChhhHHHHHHHHHHHHHHHH
Q 001810 915 LVALVGRLFGVSVISAIRTGLLLAPGGEFAFVAFGEAVNQVCFQPHTVFLIPNGISIYLQLIM 977 (1010)
Q Consensus 915 ~v~l~~~~~gl~~real~IGl~LaprG~vaLVLa~iAls~GiIs~~~lVvlvVVlS~IItPiL 977 (1010)
++|+.++.+|++++++..+|+++.++|++++++++.+.. +.++++. ...+++++++++|+.
T Consensus 316 ~~~~~~~~~g~~~~~~~~~g~~~~~~ge~~~v~~~~~~~-~~i~~~~-~~~~v~~smi~t~i~ 376 (397)
T COG0475 316 GAYLAARLLGFSKRLALGIGLLLRQGGEFAFVLAGIALG-SAISEAL-LTAVVILSMITTPIL 376 (397)
T ss_pred HHHHHHHHHcCcHHHHHHHHhhhhhhhHHHHHHHHhccc-chhHHHH-HHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999988777 3455444 233344444444443
No 6
>PRK05326 potassium/proton antiporter; Reviewed
Probab=100.00 E-value=5.5e-39 Score=381.68 Aligned_cols=371 Identities=21% Similarity=0.208 Sum_probs=302.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHhhccccccccc--CchhHHHHHHHHHHHHHHHHhhcCChhHHH
Q 001810 601 ASLFDVLWLLLASVIFVPIFQKIPGGSPVLGYLAAGILIGPYGLSIIR--HVHGTKAIAEFGVVFLLFNIGLELSVERLS 678 (1010)
Q Consensus 601 ~~Ll~illLLl~A~ilg~Ll~Rl~gLP~vVG~ILaGILLGP~gLglI~--~~~~le~LaeLGLi~LLF~aGLEidl~~Lr 678 (1010)
..++.+.++++++.+++.+++|+ ++|.+++++++|+++||.++|.+. +.+..+.++++++++++|.+|+++|++.+|
T Consensus 6 ~~ll~~~~ll~l~~~~~~l~~r~-~~P~ll~~il~GillGp~~lg~i~~~~~~~~~~i~~l~L~~iLF~~Gl~~~~~~l~ 84 (562)
T PRK05326 6 SLLLIGALLLLLSILASRLSSRL-GIPSLLLFLAIGMLAGEDGLGGIQFDNYPLAYLVGNLALAVILFDGGLRTRWSSFR 84 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHc-CCcHHHHHHHHHHHhCccccCCcccCcHHHHHHHHHHHHHHHHHcCccCCCHHHHH
Confidence 56777889999999999999999 999999999999999999999663 345678999999999999999999999999
Q ss_pred hchhhHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHhhhcccCcHHHHHHHHHHcCC-CCChhhHHHHHHHHhHHHH
Q 001810 679 SMKKYVFGLGSAQVLVTAVVVGLVAHFVSGLPGPASIVIGNGLALSSTAVVLQVLQERGE-STSRHGRATFSVLLFQDLA 757 (1010)
Q Consensus 679 r~~k~il~LAlv~vllt~~~Vg~la~~l~Gls~~~ALLLGaILSaTSpAVvv~IL~elg~-l~s~vGrLlL~~SllnDi~ 757 (1010)
++++.++.++++++++|++++++++++++|++|..++++|+++++||++++.+++++.++ ++++++++++++|.+||.+
T Consensus 85 ~~~~~~~~la~~gv~~t~~~~g~~~~~l~g~~~~~alllgai~s~Td~a~v~~iL~~~~l~l~~~v~~~l~~eS~~nD~~ 164 (562)
T PRK05326 85 PALGPALSLATLGVLITAGLTGLFAHWLLGLDWLEGLLLGAIVGSTDAAAVFSLLRGKGLNLKERVASTLEIESGSNDPM 164 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHhhhhccCchHHHHHHHhccCCCcchhHHhHhhhhhhcccHH
Confidence 999999999999999998888888999999999999999999999999999999999995 7899999999999999999
Q ss_pred HHHHHHHHHhhcCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHH
Q 001810 758 VVVLLILIPLISPNSSKGGVGFQAIAEALGVAAVKAAVAITAIIAGGRLLLRPIYKQIAENQNAEIFSANTLLVILGTSL 837 (1010)
Q Consensus 758 aIVLfali~~ls~~~s~g~isl~~I~~~Lg~~ll~vilgiii~llvg~~llr~llr~i~~~~~~ei~l~ltLll~f~~~l 837 (1010)
+++++.++..+..... .+.++.. +..++..++++++++++++ ++..+++++... .+.+.+..+++.+++.+|+
T Consensus 165 ai~l~~~~~~~~~~~~-~~~~~~~----~~~~~~~~~~g~~~G~~~g-~l~~~l~~~~~~-~~~~~~~i~~l~~~l~~~~ 237 (562)
T PRK05326 165 AVFLTITLIELITGGE-TGLSWGF----LLLFLQQFGLGALIGLLGG-WLLVQLLNRIAL-PAEGLYPILVLAGALLIFA 237 (562)
T ss_pred HHHHHHHHHHHHhCCC-CcchHHH----HHHHHHHHHHHHHHHHHHH-HHHHHHHHhccC-chhhHHHHHHHHHHHHHHH
Confidence 9988865433322211 1122221 2223334444555555554 445556665532 1334455667888899999
Q ss_pred HHHHhchhHHHHHHHHHHHcCCCc--hhHHHHHHHHhHHHHHHHHHHHHhhcccChhhhhhhhhhH-HHHHHHHHHHHHH
Q 001810 838 LTARAGLSMALGAFLAGLLLAETE--FSLQVESDIAPYRGLLLGLFFMTVGMSIDPKLLLSNFPVI-TGALGLLIGGKTI 914 (1010)
Q Consensus 838 lAe~lGlSgvLGAFiAGLiLs~~~--~~~~L~e~l~~i~~~f~PLFFVlIGl~Ldl~~L~~~~~~i-ilillvvil~K~l 914 (1010)
+++.+|+|+++|+|++|+++++.+ .+..+.+.++.+.+++.|+||+++|+.+++..+...++.. ++.+++.+++|++
T Consensus 238 ~a~~lg~Sg~la~~iaGl~l~n~~~~~~~~i~~~~~~l~~l~~~~~Fv~lGl~~~~~~l~~~~~~~l~i~~~l~~vaR~l 317 (562)
T PRK05326 238 LTAALGGSGFLAVYLAGLVLGNRPIRHRHSILRFFDGLAWLAQIGMFLVLGLLVTPSRLLDIALPALLLALFLILVARPL 317 (562)
T ss_pred HHHHHCCcHHHHHHHHHHHHhCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999864 4456777778888999999999999999998876544333 3334566789999
Q ss_pred HHHHHHHhhCCChHHHHHHHHHHhhHHHHHHHHHHHHHhCCCCChhh---HHHHHHHHHHHHHHHHHHH
Q 001810 915 LVALVGRLFGVSVISAIRTGLLLAPGGEFAFVAFGEAVNQVCFQPHT---VFLIPNGISIYLQLIMIFF 980 (1010)
Q Consensus 915 ~v~l~~~~~gl~~real~IGl~LaprG~vaLVLa~iAls~GiIs~~~---lVvlvVVlS~IItPiL~~l 980 (1010)
+++++.+.++++++|+.++||. ++||.++++++.++...|+.+.+. .++.++++|+++.+.+...
T Consensus 318 ~v~l~~~~~~~~~~e~~~i~~~-g~RG~v~i~lA~~~~~~~~~~~~~~~~~~~~vvl~S~~i~g~tl~~ 385 (562)
T PRK05326 318 AVFLSLLPFRFNLREKLFISWV-GLRGAVPIVLATFPMMAGLPNAQLIFNVVFFVVLVSLLLQGTTLPW 385 (562)
T ss_pred HHHHHHccCCCCHhhhheeeee-cchhHHHHHHHHHHHHcCCCchhhhhhhhheeeHHHHHHHHhhHHH
Confidence 9999999999999999999995 899999999999999999887554 5667778888776665555
No 7
>COG4651 RosB Kef-type K+ transport system, predicted NAD-binding component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.1e-38 Score=338.62 Aligned_cols=388 Identities=29% Similarity=0.466 Sum_probs=339.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHhhcccccccccCchhHHHHHHHHHHHHHHHHhhcCChhHHHh
Q 001810 600 EASLFDVLWLLLASVIFVPIFQKIPGGSPVLGYLAAGILIGPYGLSIIRHVHGTKAIAEFGVVFLLFNIGLELSVERLSS 679 (1010)
Q Consensus 600 ~~~Ll~illLLl~A~ilg~Ll~Rl~gLP~vVG~ILaGILLGP~gLglI~~~~~le~LaeLGLi~LLF~aGLEidl~~Lrr 679 (1010)
+..+-.+...+.+++++|.+..|+ |+||.+||+++|+++||+.+|++.+......++++|++++||-+|++++.+++..
T Consensus 5 tpli~tiv~gl~lAFl~G~lA~rl-rlsPLVGyL~AGv~~gpftpGFvad~~La~~LAelGViLLmFgvGLhfslkdLLa 83 (408)
T COG4651 5 TPLITTIVGGLVLAFLLGALANRL-RLSPLVGYLLAGVLAGPFTPGFVADQTLAPELAELGVILLMFGVGLHFSLKDLLA 83 (408)
T ss_pred chHHHHHHHHHHHHHHHHHHHHhc-CCCchHHHHHHHHhcCCCCCCcccchhHHHHHHHhhHHHHHHhcchheeHHHHhh
Confidence 355666778888999999999999 9999999999999999999999998888899999999999999999999999987
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHhhhcccCcHHHHHHHHHHcCCCCChhhHHHHHHHHhHHHHHH
Q 001810 680 MKKYVFGLGSAQVLVTAVVVGLVAHFVSGLPGPASIVIGNGLALSSTAVVLQVLQERGESTSRHGRATFSVLLFQDLAVV 759 (1010)
Q Consensus 680 ~~k~il~LAlv~vllt~~~Vg~la~~l~Gls~~~ALLLGaILSaTSpAVvv~IL~elg~l~s~vGrLlL~~SllnDi~aI 759 (1010)
.+...+.-++.+..+. ...|+...++.||++...+++|.++|..|+++.++.++|++..++..|++..+.-++.|+..+
T Consensus 84 vk~iAipgAl~qia~a-t~lg~gL~~~lgws~~~glvfGlaLS~aSTVvllraLqEr~lidt~rG~iAiGwLiveDl~mV 162 (408)
T COG4651 84 VKAIAIPGALAQIALA-TLLGMGLSSLLGWSFGTGIVFGLALSVASTVVLLRALEERQLIDTQRGRIAIGWLIVEDLAMV 162 (408)
T ss_pred HHHHhcchHHHHHHHH-HHHHhHHHHHcCCCcccceeeeehhhhHHHHHHHHHHHHhccccccCceEEEeehhHHHHHHH
Confidence 6654444455554432 345667788899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHH-H
Q 001810 760 VLLILIPLISPNSSKGGVGFQAIAEALGVAAVKAAVAITAIIAGGRLLLRPIYKQIAENQNAEIFSANTLLVILGTSL-L 838 (1010)
Q Consensus 760 VLfali~~ls~~~s~g~isl~~I~~~Lg~~ll~vilgiii~llvg~~llr~llr~i~~~~~~ei~l~ltLll~f~~~l-l 838 (1010)
+.+.+.+.+.+..+.++..+......++....++...+.+++++++.+.+|++.++....+.|.+.+..+.++++.++ .
T Consensus 163 l~Lvllpa~a~~~g~~~~~~~~~~~~l~~Tl~Kv~af~alml~VgrrviPw~le~~a~tGsrElf~L~vla~ALgVa~Ga 242 (408)
T COG4651 163 LALVLLPALAGVLGQGDVGFATLLVDLGITLGKVAAFIAIMLVVGRRLIPWILERVAATGSRELFTLAVLAIALGVAFGA 242 (408)
T ss_pred HHHHHhHHHHhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHhhcc
Confidence 988777666654444445555566677888888888899999999999999999998888999988888888777766 4
Q ss_pred HHHhchhHHHHHHHHHHHcCCCchhHHHHHHHHhHHHHHHHHHHHHhhcccChhhhhhhhhhHHHHHHHHHHHHHHHHHH
Q 001810 839 TARAGLSMALGAFLAGLLLAETEFSLQVESDIAPYRGLLLGLFFMTVGMSIDPKLLLSNFPVITGALGLLIGGKTILVAL 918 (1010)
Q Consensus 839 Ae~lGlSgvLGAFiAGLiLs~~~~~~~L~e~l~~i~~~f~PLFFVlIGl~Ldl~~L~~~~~~iilillvvil~K~l~v~l 918 (1010)
++.+|+|..+|||++|+++.+++..++..+..-|+++.|..+||+.+||.+|+..+......++..+++++++|-+..|.
T Consensus 243 ~~LfgvsfaLGAffaGMvL~eselshraa~~slpLrdaFaVlFFvsVGmlf~P~~l~~~pl~vlatllii~~gKs~aaf~ 322 (408)
T COG4651 243 AELFGVSFALGAFFAGMVLAESELSHRAAEDSLPLRDAFAVLFFVSVGMLFDPMILIQQPLAVLATLLIILFGKSVAAFF 322 (408)
T ss_pred ceeeccchhHHHHHHHHHhcchhhhHHHHHhccCHHHHHHHHHHHHhhhhcCcHHhhcchHHHHHHHHHHHhhhHHHHHH
Confidence 67899999999999999999999999999999999999999999999999999988877777788888889999999999
Q ss_pred HHHhhCCChHHHHHHHHHHhhHHHHHHHHHHHHHhCCCCChhh--HHHHHHHHHHHHHHHHHHHHhhcccccc
Q 001810 919 VGRLFGVSVISAIRTGLLLAPGGEFAFVAFGEAVNQVCFQPHT--VFLIPNGISIYLQLIMIFFFFNCGLLIQ 989 (1010)
Q Consensus 919 ~~~~~gl~~real~IGl~LaprG~vaLVLa~iAls~GiIs~~~--lVvlvVVlS~IItPiL~~l~~~~~r~~~ 989 (1010)
..+.+|.+.|.++.++.++++.|+|+++++..+.+.+++++.. .++...++|+++.|++....++-++..+
T Consensus 323 ivr~Fg~~~~TaLtis~SLaqigEFsfIlaGLgi~l~llp~~gr~LvlagailsIl~nPllf~~~dr~~~~~e 395 (408)
T COG4651 323 IVRAFGHPVRTALTISASLAQIGEFSFILAGLGIKLNLLPEAGRDLVLAGAILSILLNPLLFALLDRYQRSAE 395 (408)
T ss_pred HHHHhCCcchHHHHHHHHHHhhhhHHHHHHHHhhhhccCcHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhh
Confidence 9999999999999999999999999999999999999999776 7778888899999999988655444333
No 8
>PF00999 Na_H_Exchanger: Sodium/hydrogen exchanger family; InterPro: IPR006153 Sodium proton exchangers (NHEs) constitute a large family of integral membrane protein transporters that are responsible for the counter-transport of protons and sodium ions across lipid bilayers [, ]. These proteins are found in organisms across all domains of life. In archaea, bacteria, yeast and plants, these exchangers provide increased salt tolerance by removing sodium in exchanger for extracellular protons. In mammals they participate in the regulation of cell pH, volume, and intracellular sodium concentration, as well as for the reabsorption of NaCl across renal, intestinal, and other epithelia [, , , ]. Human NHE is also involved in heart disease, cell growth and in cell differentiation []. The removal of intracellular protons in exchange for extracellular sodium effectively eliminates excess acid from actively metabolising cells. In mammalian cells, NHE activity is found in both the plasma membrane and inner mitochondrial membrane. To date, nine mammalian isoforms have been identified (designated NHE1-NHE9) [, ]. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N terminus and a large cytoplasmic region at the C terminus. The transmembrane regions M3-M12 share identity with other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the region that is involved in the transport of sodium and hydrogen ions. The cytoplasmic region has little similarity throughout the family. There is some evidence that the exchangers may exist in the cell membrane as homodimers, but little is currently known about the mechanism of their antiport []. This entry represents a number of cation/proton exchangers, including Na+/H+ exchangers, K+/H+ exchangers and Na+(K+,Li+,Rb+)/H+ exchangers.; GO: 0015299 solute:hydrogen antiporter activity, 0006812 cation transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2L0E_A 2HTG_A 2KBV_A 2E30_B 1Y4E_A.
Probab=100.00 E-value=3.6e-39 Score=363.36 Aligned_cols=363 Identities=29% Similarity=0.451 Sum_probs=84.1
Q ss_pred HHHHHHHHHHHHHHhcCCCchHHHHHHHHHhhcccccccccCc-hhHHHHHHHHHHHHHHHHhhcCChhHHHhchhhHHH
Q 001810 608 WLLLASVIFVPIFQKIPGGSPVLGYLAAGILIGPYGLSIIRHV-HGTKAIAEFGVVFLLFNIGLELSVERLSSMKKYVFG 686 (1010)
Q Consensus 608 lLLl~A~ilg~Ll~Rl~gLP~vVG~ILaGILLGP~gLglI~~~-~~le~LaeLGLi~LLF~aGLEidl~~Lrr~~k~il~ 686 (1010)
++++.+.+.+.+++|+ ++|++++++++|+++||.+++++++. ...+.+.++|+.+++|.+|+|+|.+.+|+++++.+.
T Consensus 3 lli~~~~~~~~l~~r~-~iP~~i~~i~~Gi~lg~~~~~~~~~~~~~~~~l~~i~l~~llF~~G~~~d~~~l~~~~~~~~~ 81 (380)
T PF00999_consen 3 LLILLAFVAGILFRRL-GIPSIIGYILVGIVLGPSGLGLLEPDNPSFELLAEIGLAFLLFEAGLELDIKELRRNWRRALA 81 (380)
T ss_dssp ----------------------------------------------S-SSHHHHS--SSHHHHTTGGGG-----------
T ss_pred EEeehHHHHHHHHHHh-CCCHHHHHHHheeehhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHhhcccccccccccccc
Confidence 3455566677789999 99999999999999999999987776 788999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHH---hcCCChHHHHHHhhhcccCcHHHHHHHHHHcCCCCChhhHHHHHHHHhHHHHHHHHHH
Q 001810 687 LGSAQVLVTAVVVGLVAHF---VSGLPGPASIVIGNGLALSSTAVVLQVLQERGESTSRHGRATFSVLLFQDLAVVVLLI 763 (1010)
Q Consensus 687 LAlv~vllt~~~Vg~la~~---l~Gls~~~ALLLGaILSaTSpAVvv~IL~elg~l~s~vGrLlL~~SllnDi~aIVLfa 763 (1010)
+++.+++++.+++++++++ ..|+++..++++|+++++|||+++.++++|.+..+++.++++.+++++||+++++++.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~l~~~~~~ts~~~v~~~l~~~~~~~~~~~~~~~~~~~i~d~~~i~~~~ 161 (380)
T PF00999_consen 82 LGLVGFLLPFILVGFLLSFFLFILGLSWAEALLLGAILSATSPAIVSPVLKELGLLPSRLGRLLLSESVINDIIAIILLS 161 (380)
T ss_dssp --------------------------------TTHHHHTT--HHHHHHHH-HHHT-SSTTHHHHTTTTTTTTTTTTTTT-
T ss_pred cccceeeehhhHHHHHHHHhhccchhhhHHHhhhHHhhhcccccchhhhhhhhhcccccccchhhhhchhhccchhhhhh
Confidence 9999999887666877775 5799999999999999999999999999888889999999999999999999998886
Q ss_pred HHHhhcCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--cchhHHHHHHHHHHHHHHHHHHH
Q 001810 764 LIPLISPNSSKGGVGFQAIAEALGVAAVKAAVAITAIIAGGRLLLRPIYKQIAEN--QNAEIFSANTLLVILGTSLLTAR 841 (1010)
Q Consensus 764 li~~ls~~~s~g~isl~~I~~~Lg~~ll~vilgiii~llvg~~llr~llr~i~~~--~~~ei~l~ltLll~f~~~llAe~ 841 (1010)
++....... ...++. ..+...+. .++++++++ ++.+++.+++.++ ++.+.....++.+++..+++++.
T Consensus 162 ~~~~~~~~~--~~~~~~---~~~~~~~~----~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~ 231 (380)
T PF00999_consen 162 ILISLAQAS--GQSSLG---QLLLSFLW----IILIGIVIG-LLFGWLLRRLIRRASPSSEIFILLVLALILLLYGLAEI 231 (380)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhhhhhccc--cccccc---chhcchhh----hhhhheeee-cccchHHHHhhhhccccchhhHHHHHHHHhhhcccccc
Confidence 554443111 111111 11111111 111222222 3334444444444 45556666788899999999999
Q ss_pred hchhHHHHHHHHHHHcCCCchhHHHHHHHHhHH-HHHHHHHHHHhhcccChhhhh---hhhhhHHHHHHHHHHHHHHHHH
Q 001810 842 AGLSMALGAFLAGLLLAETEFSLQVESDIAPYR-GLLLGLFFMTVGMSIDPKLLL---SNFPVITGALGLLIGGKTILVA 917 (1010)
Q Consensus 842 lGlSgvLGAFiAGLiLs~~~~~~~L~e~l~~i~-~~f~PLFFVlIGl~Ldl~~L~---~~~~~iilillvvil~K~l~v~ 917 (1010)
+|+|+++|+|++|+++++.+.++++.++++++. +++.|+||+++|+++|++.+. ..++..+.+++..+++|+++++
T Consensus 232 ~g~s~~l~af~~Gl~~~~~~~~~~~~~~l~~~~~~~~~~lfF~~iG~~~~~~~l~~~~~~~~~~~~~~~~~~~~k~~~~~ 311 (380)
T PF00999_consen 232 LGLSGILGAFIAGLILSNSPFAERLEEKLESFWYGFFIPLFFVFIGMSLDFSSLFNSPSVIILVLLLLIAILLGKFIGVY 311 (380)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccceeeeeehccccccccchhhhcccchhhHHHhhHHhhhhcccccccccccchhhhhhHHHHHHHHHHhhhceee
Confidence 999999999999999998888888999999997 999999999999999988873 3456667777777899999999
Q ss_pred HHHHhhCCChHHHHHHHHHHhhHHHHHHHHHHHHHhCCCCChhh--HHHHHHHHHHHHHHHHHHHH
Q 001810 918 LVGRLFGVSVISAIRTGLLLAPGGEFAFVAFGEAVNQVCFQPHT--VFLIPNGISIYLQLIMIFFF 981 (1010)
Q Consensus 918 l~~~~~gl~~real~IGl~LaprG~vaLVLa~iAls~GiIs~~~--lVvlvVVlS~IItPiL~~l~ 981 (1010)
+..+..+++++++..+|+++.+||+++++++..+.+.|.++++. .++.++++|+++.|++.+..
T Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~g~~~l~la~~~~~~~~~~~~~~~~~~~~vl~t~ii~~~~~~~l 377 (380)
T PF00999_consen 312 LASRLFGIPWKEALFIGLGMLPRGEVSLALALIALNLGIISEQMFTIIIAAVLLTIIIAGIILSPL 377 (380)
T ss_dssp -----------HHHHTTTTSS--HHHHHHHHHHHHH------------------------------
T ss_pred hhhhhcccccchhHHHHHhhcCccHHHHHHHHHHHhcCCCCHHHHHHheeeeeeHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999998888 67788888999888887764
No 9
>KOG1650 consensus Predicted K+/H+-antiporter [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.8e-35 Score=356.53 Aligned_cols=394 Identities=19% Similarity=0.284 Sum_probs=328.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHhhcccccccccC----------chhHHHHHHHHHHHHHHHHhh
Q 001810 601 ASLFDVLWLLLASVIFVPIFQKIPGGSPVLGYLAAGILIGPYGLSIIRH----------VHGTKAIAEFGVVFLLFNIGL 670 (1010)
Q Consensus 601 ~~Ll~illLLl~A~ilg~Ll~Rl~gLP~vVG~ILaGILLGP~gLglI~~----------~~~le~LaeLGLi~LLF~aGL 670 (1010)
..++++.+++++..+++.++|++ |+|.++.++++||++||+.+|.++. ...++.++.+|..+++|..|+
T Consensus 23 l~~lq~~~i~~~~~~~~~~l~pl-~qp~~~s~il~Gi~lgps~~g~~~~~~~~~f~~~s~~~l~~~~~lg~~~f~Fl~gl 101 (769)
T KOG1650|consen 23 LLLLQIILIIVLSRLLHILLKPL-GQPRVISEILAGIILGPSLLGRIPSYMNTIFPKSSMIVLELLANLGFLFFLFLMGL 101 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhh-ccchhHHHHHHHHhcchHhhccChhhhhcccccchHHHHHHHHHHHHHHHHHHHHH
Confidence 67889999999999999999999 9999999999999999999887642 245789999999999999999
Q ss_pred cCChhHHHhchhhHHHHHHHHHHHHHHHHHHHHHHhc------CC-----ChHHHHHHhhhcccCcHHHHHHHHHHcCCC
Q 001810 671 ELSVERLSSMKKYVFGLGSAQVLVTAVVVGLVAHFVS------GL-----PGPASIVIGNGLALSSTAVVLQVLQERGES 739 (1010)
Q Consensus 671 Eidl~~Lrr~~k~il~LAlv~vllt~~~Vg~la~~l~------Gl-----s~~~ALLLGaILSaTSpAVvv~IL~elg~l 739 (1010)
++|.+.++++++....+++.++++++ .+|..+.+.. .. .+..-.+++...+.|+.++++++|.|+++.
T Consensus 102 ~~d~~~i~~~~kka~~I~~~~~~~p~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~tsfpv~~~iL~eLkll 180 (769)
T KOG1650|consen 102 EIDLRVIRRTGKKAIVIAIASVVLPF-GLGFGLAFLLSDTKADKEDGALFLPFEILFILSAQSITSFPVLARILAELKLL 180 (769)
T ss_pred hhhHHHhhccCceeEEEEEEEeehhh-HhhhhhhhhccccccccccccccccHHHHHHHHHhhcchhHHHHHHHHHhhch
Confidence 99999999999999888888888764 4444333321 11 122456777899999999999999999999
Q ss_pred CChhhHHHHHHHHhHHHHHHHHHHHHHhhcCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 001810 740 TSRHGRATFSVLLFQDLAVVVLLILIPLISPNSSKGGVGFQAIAEALGVAAVKAAVAITAIIAGGRLLLRPIYKQIAENQ 819 (1010)
Q Consensus 740 ~s~vGrLlL~~SllnDi~aIVLfali~~ls~~~s~g~isl~~I~~~Lg~~ll~vilgiii~llvg~~llr~llr~i~~~~ 819 (1010)
++++|++++++++++|+++|.++++...+....... ++. .++.. +..++..++..++.+|.+.|+.+++
T Consensus 181 ~se~Grla~saa~v~dv~~~~ll~~~~~~~~~~~~~--~~~----~~~~~-----~~~~~~~l~~~~v~~p~~~wi~kr~ 249 (769)
T KOG1650|consen 181 NSELGRLALSAAVVNDVAGWILLALALAFSSELKLS--PLR----SVWDL-----VLVIGFVLFLFFVVRPLMKWIIKRT 249 (769)
T ss_pred hchhhhhhhhhhhhhhHHHHHHHHHHHHHhccCCCc--chH----HHHHH-----HHHHHHHHheeeehhhhHHHHhhcC
Confidence 999999999999999999999887766665443211 111 12111 1222233334466788999998763
Q ss_pred -----chhHHHHHHHHHHHHHHHHHHHhc-hhHHHHHHHHHHHcCCC-chhHHHHHHHHhH-HHHHHHHHHHHhhcccCh
Q 001810 820 -----NAEIFSANTLLVILGTSLLTARAG-LSMALGAFLAGLLLAET-EFSLQVESDIAPY-RGLLLGLFFMTVGMSIDP 891 (1010)
Q Consensus 820 -----~~ei~l~ltLll~f~~~llAe~lG-lSgvLGAFiAGLiLs~~-~~~~~L~e~l~~i-~~~f~PLFFVlIGl~Ldl 891 (1010)
..+.+...+++..++++.+++.++ +++++|+|+.|+++|+. ++...+.++++.+ .++|+|+||+..|++.|+
T Consensus 250 pe~~~~~~~~~~~~l~~vl~~~~~~~~~~~i~~~~Gaf~~Gl~iP~~~p~g~~L~ekle~~~~~~llPl~~~~~G~k~di 329 (769)
T KOG1650|consen 250 PEGKPVSDAYICVTLLGVLASAFLTDLIGGIHSIFGAFILGLAIPHGPPLGSALIEKLEDLVSGLLLPLYFAISGLKTDI 329 (769)
T ss_pred CCCCccccceehhhHHHHHHHHHHHHHhccccccchhheEEEecCCCCchhHHHHHHHHHHHHHHHHHHHHHhhccceeH
Confidence 123455567777888888889888 89999999999999985 7889999999998 799999999999999999
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHhhHHHHHHHHHHHHHhCCCCChhh---HHHHHHH
Q 001810 892 KLLLSNFPVITGALGLLIGGKTILVALVGRLFGVSVISAIRTGLLLAPGGEFAFVAFGEAVNQVCFQPHT---VFLIPNG 968 (1010)
Q Consensus 892 ~~L~~~~~~iilillvvil~K~l~v~l~~~~~gl~~real~IGl~LaprG~vaLVLa~iAls~GiIs~~~---lVvlvVV 968 (1010)
..+.. |...+..+....++|++++..++.++++|+++++.+|++|+++|.++++++..+.+.++++.+. .++.+++
T Consensus 330 ~~i~~-~~~~~~~i~~~~~~K~l~t~~~sl~~k~p~~~~l~l~~lm~~kgl~el~~~~~~~~~~~~~~~~f~~~vl~alv 408 (769)
T KOG1650|consen 330 SRINK-WGALIRTILIFGAVKLLSTLGTSLYCKLPLRDSLALGLLMSTKGLVELIVLNTGLDRKILSDEGFTVMVLMALV 408 (769)
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHhhhHHHHHHHHHHhhcCCcccchHHHHHHHHHH
Confidence 98877 7777888888899999999999999999999999999999999999999999999999999988 4566667
Q ss_pred HHHHHHHHHHHHHhhcccccccccccccCCCCCCCCCccc
Q 001810 969 ISIYLQLIMIFFFFNCGLLIQHGTKCLTASPLESQMPVLD 1008 (1010)
Q Consensus 969 lS~IItPiL~~l~~~~~r~~~~~~~tl~~~~~eseLriL~ 1008 (1010)
.|.+++|++..+|+|.+++..|+++++++.+++++||+|+
T Consensus 409 ~t~I~~~~l~~~y~p~~~~~~y~~~~i~~~~~~~~Lril~ 448 (769)
T KOG1650|consen 409 STFITPPLLMFLYDPTRKYHGYKKRGIQHLKPNSELRILT 448 (769)
T ss_pred HHhhHHHHHHHhcchhhhcCceEeehhhhcCCCCceEEEE
Confidence 7777888888889999999999999999999999999986
No 10
>TIGR00932 2a37 transporter, monovalent cation:proton antiporter-2 (CPA2) family.
Probab=100.00 E-value=1.6e-33 Score=305.70 Aligned_cols=272 Identities=48% Similarity=0.790 Sum_probs=230.7
Q ss_pred HHHHHHHHHHHhcCCCchHHHHHHHHHhhcccccccccCchhHHHHHHHHHHHHHHHHhhcCChhHHHhchhhHHHHHHH
Q 001810 611 LASVIFVPIFQKIPGGSPVLGYLAAGILIGPYGLSIIRHVHGTKAIAEFGVVFLLFNIGLELSVERLSSMKKYVFGLGSA 690 (1010)
Q Consensus 611 l~A~ilg~Ll~Rl~gLP~vVG~ILaGILLGP~gLglI~~~~~le~LaeLGLi~LLF~aGLEidl~~Lrr~~k~il~LAlv 690 (1010)
+++.+++.+++|+ ++|++++++++|+++||.++|.+++.+.++.++++|+.+++|.+|+|+|++.+|+++++.+.+++.
T Consensus 2 ~~a~~~~~l~~~l-~lP~~v~~il~GillGp~~lg~i~~~~~~~~l~~igl~~llF~~Gl~~d~~~l~~~~~~~~~~~~~ 80 (273)
T TIGR00932 2 LAAVLAVPLSRRL-GIPSVLGYLLAGVLIGPSGLGLISNVEGVNHLAEFGVILLMFLIGLELDLERLWKLRKAAFGVGVL 80 (273)
T ss_pred cHHHHHHHHHHHh-CCCHHHHHHHHHHHhCcccccCCCChHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence 4677889999999 999999999999999999999988888899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCChHHHHHHhhhcccCcHHHHHHHHHHcCCCCChhhHHHHHHHHhHHHHHHHHHHHHHhhcC
Q 001810 691 QVLVTAVVVGLVAHFVSGLPGPASIVIGNGLALSSTAVVLQVLQERGESTSRHGRATFSVLLFQDLAVVVLLILIPLISP 770 (1010)
Q Consensus 691 ~vllt~~~Vg~la~~l~Gls~~~ALLLGaILSaTSpAVvv~IL~elg~l~s~vGrLlL~~SllnDi~aIVLfali~~ls~ 770 (1010)
+++++.+++++.+++++|+++..++++|+++++||+++++++++|++..+++.|+++++++++||+.+++++.+...+..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~ls~Ts~~v~~~il~~~~~~~~~~g~l~l~~~~~~D~~~i~~l~~~~~~~~ 160 (273)
T TIGR00932 81 QVLVPGVLLGLLLGHLLGLALGAAVVIGIILALSSTAVVVQVLKERGLLKTPFGQTVLGILLFQDIAVVPLLALLPLLAT 160 (273)
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhHHHHHHHHHHHcCcccChHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99998778888778888999999999999999999999999999999999999999999999999999999977655543
Q ss_pred CCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhchhHHHHH
Q 001810 771 NSSKGGVGFQAIAEALGVAAVKAAVAITAIIAGGRLLLRPIYKQIAENQNAEIFSANTLLVILGTSLLTARAGLSMALGA 850 (1010)
Q Consensus 771 ~~s~g~isl~~I~~~Lg~~ll~vilgiii~llvg~~llr~llr~i~~~~~~ei~l~ltLll~f~~~llAe~lGlSgvLGA 850 (1010)
..+ + +...+ ...++..++++++..++++++.+++.++..+.++.+.+...++.+++.++.+++.+|+|+++|+
T Consensus 161 ~~~-~--~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~la~~~g~s~~lga 233 (273)
T TIGR00932 161 SAS-T--EHVAL----ALLLLKVFLAFLLLVLLGRWLLRPVLRLTAELRPSELFTAGSLLLMFGSAYFADLLGLSMALGA 233 (273)
T ss_pred CCC-c--chHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 211 1 11111 1112222333333444555666777777665445567777788888999999999999999999
Q ss_pred HHHHHHcCCCchhHHHHHHHHhHHHHHHHHHHHHhhcccC
Q 001810 851 FLAGLLLAETEFSLQVESDIAPYRGLLLGLFFMTVGMSID 890 (1010)
Q Consensus 851 FiAGLiLs~~~~~~~L~e~l~~i~~~f~PLFFVlIGl~Ld 890 (1010)
|++|+++++.+.++.+.++++++.++|.|+||+++|+++|
T Consensus 234 f~aGl~~~~~~~~~~l~~~l~~~~~~f~plFF~~~G~~~~ 273 (273)
T TIGR00932 234 FLAGVVLSESEYRHKLESDLEPIGGVLLPLFFISVGMSVD 273 (273)
T ss_pred HHHHHHHcCCchHHHHHHHHHhHHHHHHHHHHHHhCccCC
Confidence 9999999998888889999999999999999999999876
No 11
>TIGR00844 c_cpa1 na(+)/h(+) antiporter. This model is specific for the fungal members of this family.
Probab=100.00 E-value=7.2e-33 Score=331.99 Aligned_cols=349 Identities=16% Similarity=0.068 Sum_probs=266.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-hcCCCchHHHHHHHHHhhcccccccccCch------hHHHHHHHHHHHHHHHHhhcCC
Q 001810 601 ASLFDVLWLLLASVIFVPIFQ-KIPGGSPVLGYLAAGILIGPYGLSIIRHVH------GTKAIAEFGVVFLLFNIGLELS 673 (1010)
Q Consensus 601 ~~Ll~illLLl~A~ilg~Ll~-Rl~gLP~vVG~ILaGILLGP~gLglI~~~~------~le~LaeLGLi~LLF~aGLEid 673 (1010)
.++..+..++++..++..+++ |+ .+|.++.++++|+++||.+++++.+.. .+..+.++++++++|.+|++++
T Consensus 13 l~~~~lG~~lll~~l~s~~lkeRl-~Ls~~~v~Ll~GiilGP~~l~~idP~~~g~~d~i~leIteIvL~I~LFa~Gl~L~ 91 (810)
T TIGR00844 13 VAYSCVGIFSSIFSLVSLFVKEKL-YIGESMVASIFGLIVGPHCLNWFNPLSWGNTDSITLEISRILLCLQVFAVSVELP 91 (810)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhc-CCcHHHHHHHHHHHhhhhhhccCChhhcccchHHHHHHHHHHHHHHHHHHHHhCC
Confidence 345555555555445555555 88 899999999999999999998876432 2233889999999999999999
Q ss_pred hhHHHhchhhHHHHHHHHHHHHHHHHHHHHHHh-cCCChHHHHHHhhhcccCcHHHHHHHHHH---cCCCCChhhHHHHH
Q 001810 674 VERLSSMKKYVFGLGSAQVLVTAVVVGLVAHFV-SGLPGPASIVIGNGLALSSTAVVLQVLQE---RGESTSRHGRATFS 749 (1010)
Q Consensus 674 l~~Lrr~~k~il~LAlv~vllt~~~Vg~la~~l-~Gls~~~ALLLGaILSaTSpAVvv~IL~e---lg~l~s~vGrLlL~ 749 (1010)
++.++++|+.++.+.+.+++++++++++++|++ +|++|..|+++|+++++|||+.+..+++. .+ ++.++..++.+
T Consensus 92 ~~~Lrr~wrsV~rLl~~~M~lT~livAL~a~~Li~GL~~~~ALLLGAILAPTDPVLAssV~kg~~~~r-vP~rLR~lL~~ 170 (810)
T TIGR00844 92 RKYMLKHWVSVTMLLVPVMTSGWLVIALFVWILVPGLNFPASLLMGACITATDPVLAQSVVSGTFAQK-VPGHLRNLLSC 170 (810)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhhcCCcHHHHHHHHhcccccc-CChHHHhHHhh
Confidence 999999999999999999999988888888887 79999999999999999999999999873 33 68899999999
Q ss_pred HHHhHHHHHHHHHHHHHhhcC-CCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--chhHHHH
Q 001810 750 VLLFQDLAVVVLLILIPLISP-NSSKGGVGFQAIAEALGVAAVKAAVAITAIIAGGRLLLRPIYKQIAENQ--NAEIFSA 826 (1010)
Q Consensus 750 ~SllnDi~aIVLfali~~ls~-~~s~g~isl~~I~~~Lg~~ll~vilgiii~llvg~~llr~llr~i~~~~--~~ei~l~ 826 (1010)
++.+||.++++++.+...+.. ....+..... +.+..+++.+++++++++++| ++..++++|+.++. ..+.+..
T Consensus 171 ESGlNDGlAfpfv~LaL~ll~~~~~g~~~~~~---w~l~~~L~~i~~GiliG~vvG-~l~~~Ll~~l~rr~~i~~esfla 246 (810)
T TIGR00844 171 ESGCNDGLAFPFVFLSMDLLLYPGRGGEIVKD---WICVTILWECIFGSILGCIIG-YCGRKAIRFAEGKNIIDRESFLA 246 (810)
T ss_pred hhhcccHHHHHHHHHHHHHHhccCccccchhh---HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhcccchhHHHH
Confidence 999999999887744322221 1111111111 123344555666777777777 45667777776443 3445555
Q ss_pred HHHHHHHHHHHHHHHhchhHHHHHHHHHHHcCCCch-h--HHHHHHHHhHHHHHHHHHHHHhhcccChhhhhh------h
Q 001810 827 NTLLVILGTSLLTARAGLSMALGAFLAGLLLAETEF-S--LQVESDIAPYRGLLLGLFFMTVGMSIDPKLLLS------N 897 (1010)
Q Consensus 827 ltLll~f~~~llAe~lGlSgvLGAFiAGLiLs~~~~-~--~~L~e~l~~i~~~f~PLFFVlIGl~Ldl~~L~~------~ 897 (1010)
..++++++++.+++.+|.|++|++|+||+++++... . ......++.+..+++.++|+++|+.+++..+.. .
T Consensus 247 ~~LaLAli~~gla~lLggSGfLAVFVAGl~~gn~~~~~~~~~~~~f~e~ie~LLn~~lFVlLGa~L~~~~l~~~~l~~~~ 326 (810)
T TIGR00844 247 FYLILALTCAGFGSMLGVDDLLVSFFAGTAFAWDGWFAQKTHESNVSNVIDVLLNYAYFVYLGSILPWKDFNNGDIGLDV 326 (810)
T ss_pred HHHHHHHHHHHHHHHhccccHHHHHHHHHHHhcccchhhhHHHhhHHHHHHHHHHHHHHHHHHHhhCHhhcccchhhHHH
Confidence 677788888899999999999999999999998532 1 122334555578999999999999998876642 2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhh--CCChHHHHHHHHHHhhHHHHHHHHHHHHHhCCC
Q 001810 898 FPVITGALGLLIGGKTILVALVGRLF--GVSVISAIRTGLLLAPGGEFAFVAFGEAVNQVC 956 (1010)
Q Consensus 898 ~~~iilillvvil~K~l~v~l~~~~~--gl~~real~IGl~LaprG~vaLVLa~iAls~Gi 956 (1010)
|..+++.++++++.|+.++++...+. ..+|++++++|| ++|||..+++++.++++.+.
T Consensus 327 w~~ilLaL~LifVrRPpaVlll~~li~~~~s~rErlFigW-FGpRGIGSIyyl~~A~~~~~ 386 (810)
T TIGR00844 327 WRLIILSLVVIFLRRIPAVLILKPLIPDIKSWREAMFIGH-FGPIGVGAVFAAILSKSQLE 386 (810)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcccCCCHHHHHHhee-eccccHHHHHHHHHHHHhhh
Confidence 55556666777788988888764443 468999999999 79999999999999988765
No 12
>TIGR00831 a_cpa1 Na+/H+ antiporter, bacterial form. This model is specific for the bacterial members of this family.
Probab=100.00 E-value=9.3e-32 Score=317.54 Aligned_cols=331 Identities=17% Similarity=0.137 Sum_probs=245.8
Q ss_pred HHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHhhccccccc-ccCchhHHHHHHHHHHHHHHHHhhcCChhHHHhchhhH
Q 001810 606 VLWLLLASVIFVPIFQKIPGGSPVLGYLAAGILIGPYGLSI-IRHVHGTKAIAEFGVVFLLFNIGLELSVERLSSMKKYV 684 (1010)
Q Consensus 606 illLLl~A~ilg~Ll~Rl~gLP~vVG~ILaGILLGP~gLgl-I~~~~~le~LaeLGLi~LLF~aGLEidl~~Lrr~~k~i 684 (1010)
++.+++++.....+++|+ ++|++++++++|+++||...+. ++ ...+.+..+++++++|.+|+++|++.+|++++.+
T Consensus 3 ~~~l~~~~~~~~~l~~r~-~lP~~v~lil~Gi~lg~~~~~~~~~--~~~~~~~~~~Lp~lLF~~g~~~~~~~l~~~~~~i 79 (525)
T TIGR00831 3 IIELVMLATAVAVTVKFI-RLPYPIALILAGLLLGLAGLLPEVP--LDREIVLFLFLPPLLFEAAMNTDLRELRENFRPI 79 (525)
T ss_pred HHHHHHHHHHHHHHhccc-CCCHHHHHHHHHHHHHhccccCCCC--CCHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 355666677778889999 9999999999999999754332 21 1224566789999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHhhhcccCcHHHHHHHHHHcCCCCChhhHHHHHHHHhHHHHHHHHHHH
Q 001810 685 FGLGSAQVLVTAVVVGLVAHFVSGLPGPASIVIGNGLALSSTAVVLQVLQERGESTSRHGRATFSVLLFQDLAVVVLLIL 764 (1010)
Q Consensus 685 l~LAlv~vllt~~~Vg~la~~l~Gls~~~ALLLGaILSaTSpAVvv~IL~elg~l~s~vGrLlL~~SllnDi~aIVLfal 764 (1010)
+.+++.++++|++++++++++++|++|..++++|+++++|||+++.+++++.+ .++++.+++.++|++||++++++|.+
T Consensus 80 ~~la~~~vlit~~~v~~~~~~~~~l~~~~alllGails~TDpvav~~il~~~~-~p~rl~~il~gESllND~~alvlf~~ 158 (525)
T TIGR00831 80 ALIAFLLVVVTTVVVGFSLNWILGIPLALALILGAVLSPTDAVAVLGTFKSIR-APKKLSILLEGESLLNDGAALVVFAI 158 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHhCCCCHHHHHHHHhcCC-CCHHHHHHHhhhhhhcchHHHHHHHH
Confidence 99999999999999999988889999999999999999999999999999977 58899999999999999999999966
Q ss_pred HHhhcCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhch
Q 001810 765 IPLISPNSSKGGVGFQAIAEALGVAAVKAAVAITAIIAGGRLLLRPIYKQIAENQNAEIFSANTLLVILGTSLLTARAGL 844 (1010)
Q Consensus 765 i~~ls~~~s~g~isl~~I~~~Lg~~ll~vilgiii~llvg~~llr~llr~i~~~~~~ei~l~ltLll~f~~~llAe~lGl 844 (1010)
...+.... +..++.. .+..++...++++++++++++ +..++.++.. ++......++++++|.+|+++|.+|.
T Consensus 159 ~~~~~~~~--~~~~~~~---~~~~f~~~~~~gi~vG~~~g~-~~~~l~~~~~--~~~~~~~~l~l~~~~~~y~lAe~lg~ 230 (525)
T TIGR00831 159 AVAVALGK--GVFDPLN---AALDFAVVCVGGIAAGLAVGY-LAYRLLRAKI--DDPLVEIALTILAPFAGFLLAERFHF 230 (525)
T ss_pred HHHHHhcC--CCCcHHH---HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhc--cccHHHHHHHHHHHHHHHHHHHHhCC
Confidence 54443221 2222222 222333344555666666663 3334444322 23333455788899999999999999
Q ss_pred hHHHHHHHHHHHcCCCch--------hHHHHHHHHhHHHHHHHHHHHHhhcccChhhh--hh----hhh--------hHH
Q 001810 845 SMALGAFLAGLLLAETEF--------SLQVESDIAPYRGLLLGLFFMTVGMSIDPKLL--LS----NFP--------VIT 902 (1010)
Q Consensus 845 SgvLGAFiAGLiLs~~~~--------~~~L~e~l~~i~~~f~PLFFVlIGl~Ldl~~L--~~----~~~--------~ii 902 (1010)
|+++|+|++|+++++... +....+.|+.+..++++++|+++|++++.... +. .+. ..+
T Consensus 231 SgilAvv~aGl~l~~~~~~~~~~~~~~~~~~~fw~~l~~ll~~~iFvllGl~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (525)
T TIGR00831 231 SGVIAVVAAGLILTNYGRDFSMSPTTRLIALDFWSVIVFLVNGIIFILIGVQTPGTIFSAWKEILVAPAAVILALFTNAF 310 (525)
T ss_pred CHHHHHHHHHHHHccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHH
Confidence 999999999999997421 23455677888899999999999999874211 11 010 012
Q ss_pred HHHHHHHHHHHHHHHHHHH--h-----hCCChHHHHHHHHHHhhHHHHHHHHHH
Q 001810 903 GALGLLIGGKTILVALVGR--L-----FGVSVISAIRTGLLLAPGGEFAFVAFG 949 (1010)
Q Consensus 903 lillvvil~K~l~v~l~~~--~-----~gl~~real~IGl~LaprG~vaLVLa~ 949 (1010)
++....+..|+++++.... + .+++||++..++| .++||.+++.++.
T Consensus 311 ~i~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~r~~~v~~w-~G~RG~vslA~al 363 (525)
T TIGR00831 311 VIYPVMTYVRFLWTMKPFSNRFLKKKPMEFGTRWKHVVSW-AGLRGAIPLALAL 363 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccCCCChhhHHHhee-ccchHHHHHHHHH
Confidence 2223344566665544311 1 2478999999999 4999999998764
No 13
>COG0025 NhaP NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism]
Probab=100.00 E-value=5.8e-31 Score=303.79 Aligned_cols=372 Identities=22% Similarity=0.226 Sum_probs=296.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHhhcccccccccC--chhHHHHHHHHHHHHHHHHhhcCChhHH
Q 001810 600 EASLFDVLWLLLASVIFVPIFQKIPGGSPVLGYLAAGILIGPYGLSIIRH--VHGTKAIAEFGVVFLLFNIGLELSVERL 677 (1010)
Q Consensus 600 ~~~Ll~illLLl~A~ilg~Ll~Rl~gLP~vVG~ILaGILLGP~gLglI~~--~~~le~LaeLGLi~LLF~aGLEidl~~L 677 (1010)
...++...++++++.+.+.+.+|+ .+|.+..+++.|++.||.+++.+.+ ....+.+..+++.+++|..|+++|++.+
T Consensus 5 ~~~~~~~~lil~l~~~~~~~~~~l-~~~~i~~~ll~g~i~g~~~l~~~~~~~~~~~el~~~l~l~ilLf~~g~~l~~~~l 83 (429)
T COG0025 5 LMLLFLLLLILLLGLLVSVLAGRL-LLPEIPLLLLLGLLGGPPGLNLISPDLELDPELFLVLFLAILLFAGGLELDLREL 83 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh-hhhhhHHHHHHHHHHhhhhhccccccccCChHHHHHHHHHHHHHHhHhcCCHHHH
Confidence 355677788888999999999999 8999999999999999988887765 3345677799999999999999999999
Q ss_pred HhchhhHHHHHHHHHHHHHHHHHHHHHHhc-CCChHHHHHHhhhcccCcHHHHHHHHHHcCCCCChhhHHHHHHHHhHHH
Q 001810 678 SSMKKYVFGLGSAQVLVTAVVVGLVAHFVS-GLPGPASIVIGNGLALSSTAVVLQVLQERGESTSRHGRATFSVLLFQDL 756 (1010)
Q Consensus 678 rr~~k~il~LAlv~vllt~~~Vg~la~~l~-Gls~~~ALLLGaILSaTSpAVvv~IL~elg~l~s~vGrLlL~~SllnDi 756 (1010)
+++++.++.+++.++++|.+++|+++|++. ++++..|+++|++++||||+++.+++++.+ .++++.+++.++|++||.
T Consensus 84 ~~~~~~I~~La~~~v~it~~~~g~~~~~l~~~i~~~~a~l~gAilspTDPv~v~~i~~~~~-vp~ri~~iL~gESl~ND~ 162 (429)
T COG0025 84 RRVWRSILVLALPLVLITALGIGLLAHWLLPGIPLAAAFLLGAILSPTDPVAVSPIFKRVR-VPKRIRTILEGESLLNDG 162 (429)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhHHHHHHHhHHhcCCCchhhHHHHhcCC-CCHHHHHHHHHHHHhhhH
Confidence 999999999999999999999999998874 788999999999999999999999999977 689999999999999999
Q ss_pred HHHHHHHHHHhhcCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--chhHHHHHHHHHHHH
Q 001810 757 AVVVLLILIPLISPNSSKGGVGFQAIAEALGVAAVKAAVAITAIIAGGRLLLRPIYKQIAENQ--NAEIFSANTLLVILG 834 (1010)
Q Consensus 757 ~aIVLfali~~ls~~~s~g~isl~~I~~~Lg~~ll~vilgiii~llvg~~llr~llr~i~~~~--~~ei~l~ltLll~f~ 834 (1010)
.++++|.+........ +..++. .....++...++++.+++++| ++.+++++++.++. +......+++..+++
T Consensus 163 ~giv~f~~~l~~~~~~--~~~~~~---~~~~~fl~~~~~g~~~G~~iG-~l~~~l~~~~~~~~~~~~~~~~~i~L~~~~~ 236 (429)
T COG0025 163 VGIVLFKVALAALLGT--GAFSLG---WALLLFLIEALGGILLGLLLG-YLLGRLLRRLDRRGWTSPLLETLLTLLLAFA 236 (429)
T ss_pred HHHHHHHHHHHHHhcc--CCCchh---HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHccccchHHHHHHHHHHHHH
Confidence 9999996543333321 122211 234445555666677777777 56677778877642 344456678999999
Q ss_pred HHHHHHHhchhHHHHHHHHHHHcCCC--------chhHHHHHHHHhHHHHHHHHHHHHhhcccChhhhhhh-hhhHHHHH
Q 001810 835 TSLLTARAGLSMALGAFLAGLLLAET--------EFSLQVESDIAPYRGLLLGLFFMTVGMSIDPKLLLSN-FPVITGAL 905 (1010)
Q Consensus 835 ~~llAe~lGlSgvLGAFiAGLiLs~~--------~~~~~L~e~l~~i~~~f~PLFFVlIGl~Ldl~~L~~~-~~~iilil 905 (1010)
.|.+++.+|.||+++++++|+++++. ..+.+..+.|+.+..+++.++|+++|++++...+... ++.+++.+
T Consensus 237 ~~~~a~~l~~SGilAvvvaG~~~~~~~~~~~~~~~~~~~~~~fwe~l~~~ln~~iFiLlG~~i~~~~~~~~~~~~~l~~~ 316 (429)
T COG0025 237 AYLLAEALGVSGILAVVVAGLVLGEAVRINLSPASARLRLSSFWEVLDFLLNGLLFVLLGAQLPLSLLLALGLLGLLVAL 316 (429)
T ss_pred HHHHHHHhCcchHHHHHHHHHHHhhhhhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhHHHHHHHH
Confidence 99999999999999999999988521 2355667788888999999999999999998887765 67778888
Q ss_pred HHHHHHHHHHHHHHHHhhC------CChHHHHHHHHHHhhHHHHHHHHHHHHH-hCCCCChhh---HHHHHHHHHHHHHH
Q 001810 906 GLLIGGKTILVALVGRLFG------VSVISAIRTGLLLAPGGEFAFVAFGEAV-NQVCFQPHT---VFLIPNGISIYLQL 975 (1010)
Q Consensus 906 lvvil~K~l~v~l~~~~~g------l~~real~IGl~LaprG~vaLVLa~iAl-s~GiIs~~~---lVvlvVVlS~IItP 975 (1010)
++++++|++++|+..+..+ .+++++++++| -+|||.+++.++.... .......+. ++..++++|.++..
T Consensus 317 ~~~~v~R~~~V~~~~~~~~~~~~~~~~~~~~~~l~w-~G~RG~vsla~al~~p~~~~~~~~~~i~~i~~~vIl~Sl~v~g 395 (429)
T COG0025 317 VAVLLARPLWVFLSLKGSNLKLRDPLPWRERLFLSW-AGPRGVVSLALALLIPLELPGPARELILFIVFLVILFSLLVQG 395 (429)
T ss_pred HHHHHHHHHHHHHHHhhccccccCCCCHHHHHHHhh-cccccHHHHHHHHHchhhccchhhhHHHHHHHHHHHHHHHHHh
Confidence 8999999999999998743 78999999998 4999999998876433 222111222 34555566666544
Q ss_pred HHHHH
Q 001810 976 IMIFF 980 (1010)
Q Consensus 976 iL~~l 980 (1010)
+...+
T Consensus 396 ~t~~~ 400 (429)
T COG0025 396 LTLPP 400 (429)
T ss_pred hhHHH
Confidence 44444
No 14
>TIGR00840 b_cpa1 sodium/hydrogen exchanger 3. This model is specific for the eukaryotic members members of this family.
Probab=100.00 E-value=3.2e-30 Score=305.69 Aligned_cols=357 Identities=13% Similarity=0.088 Sum_probs=259.0
Q ss_pred hcCCCchHHHHHHHHHhhccccccc--ccC-chhHHHHHHHHHHHHHHHHhhcCChhHHHhchhhHHHHHHHHHHHHHHH
Q 001810 622 KIPGGSPVLGYLAAGILIGPYGLSI--IRH-VHGTKAIAEFGVVFLLFNIGLELSVERLSSMKKYVFGLGSAQVLVTAVV 698 (1010)
Q Consensus 622 Rl~gLP~vVG~ILaGILLGP~gLgl--I~~-~~~le~LaeLGLi~LLF~aGLEidl~~Lrr~~k~il~LAlv~vllt~~~ 698 (1010)
+.+++|..+..+++|+++|+...+. ++. .-..+.+..+.+++|+|.+|++++++.++++++.++.++++++++++++
T Consensus 31 ~~~~lP~s~llil~GlllG~i~~~~~~~~~~~l~~~lf~~~~LPpIlFe~g~~l~~~~f~~n~~~Il~lAv~Gvlit~~~ 110 (559)
T TIGR00840 31 VIRAVPESVLLIVYGLLVGGIIKASPHIDPPTLDSSYFFLYLLPPIVLDAGYFMPQRNFFENLGSILIFAVVGTLINAFV 110 (559)
T ss_pred hcccCCHHHHHHHHHHHHHHHHHcCCCCccCCcCHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4446999999999999999753222 221 1234678888999999999999999999999999999999999999999
Q ss_pred HHHHHHHh--------cCCChHHHHHHhhhcccCcHHHHHHHHHHcCCCCChhhHHHHHHHHhHHHHHHHHHHHHHhhcC
Q 001810 699 VGLVAHFV--------SGLPGPASIVIGNGLALSSTAVVLQVLQERGESTSRHGRATFSVLLFQDLAVVVLLILIPLISP 770 (1010)
Q Consensus 699 Vg~la~~l--------~Gls~~~ALLLGaILSaTSpAVvv~IL~elg~l~s~vGrLlL~~SllnDi~aIVLfali~~ls~ 770 (1010)
+|+++|++ .+++|..++++|+++|+|||+++.+++++.+ .+.++.+++.++|++||++++++|.++..+..
T Consensus 111 ig~~l~~~~~~~~~~~~~l~~~~allfGAiiSaTDPVAVlai~~~~~-v~~~L~~ll~gESllNDavaIVLf~~~~~~~~ 189 (559)
T TIGR00840 111 IGLSLYGICLIGGFGSIDIGLLDNLLFGSLISAVDPVAVLAVFEEYH-VNEKLYIIIFGESLLNDAVTVVLYNTFIKFHK 189 (559)
T ss_pred HHHHHHHHHhhccccccCCCHHHHHHHhHHhcCCchHHHHHHHHhcC-CCcchhhheehhhhhhccHHHHHHHHHHHHHh
Confidence 99988764 2468999999999999999999999999998 68999999999999999999999965544432
Q ss_pred CCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhchhHHHHH
Q 001810 771 NSSKGGVGFQAIAEALGVAAVKAAVAITAIIAGGRLLLRPIYKQIAENQNAEIFSANTLLVILGTSLLTARAGLSMALGA 850 (1010)
Q Consensus 771 ~~s~g~isl~~I~~~Lg~~ll~vilgiii~llvg~~llr~llr~i~~~~~~ei~l~ltLll~f~~~llAe~lGlSgvLGA 850 (1010)
.. .+..++..+...+..+++..++++++|+++| ++...+.++..... .....+++++++++|+++|.+|+||++++
T Consensus 190 ~~-~~~~~~~~~~~~i~~f~~~~~GGiliG~v~G-~l~~~l~r~~~~~~--~~e~~l~l~~~yl~Y~lAE~l~~SGiLAv 265 (559)
T TIGR00840 190 TA-DEPVTIVDVFEGCASFFVVTCGGLLVGVVFG-FLVAFITRFTHHIR--QIEPLFVFLISYLSYLFAETLHLSGILAL 265 (559)
T ss_pred cC-CCCccHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhcccc--hhHHHHHHHHHHHHHHHHHHhccchHHHH
Confidence 11 1122222223333333333445666666666 34455556654322 23345678889999999999999999999
Q ss_pred HHHHHHcCCC---c----hhHHHHHHHHhHHHHHHHHHHHHhhcccChhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHh-
Q 001810 851 FLAGLLLAET---E----FSLQVESDIAPYRGLLLGLFFMTVGMSIDPKLLLSNFPVITGALGLLIGGKTILVALVGRL- 922 (1010)
Q Consensus 851 FiAGLiLs~~---~----~~~~L~e~l~~i~~~f~PLFFVlIGl~Ldl~~L~~~~~~iilillvvil~K~l~v~l~~~~- 922 (1010)
+++|+++++. . .+..+...++.+..+.+.+.|+++|+.+......+.|..+++.++++++.|++++++.++.
T Consensus 266 v~aGl~~~~y~~~n~s~~~~~~~~~f~~~ls~l~e~~IFvlLGl~l~~~~~~~~~~~i~~~l~~~ll~R~l~V~~~~~~~ 345 (559)
T TIGR00840 266 IFCGITMKKYVEANMSRRSQTTIKYFMKMLSSLSETLIFIFLGVSLVTENHEWNWAFVVATLSFCVIYRVLGVRTLSWIT 345 (559)
T ss_pred HHHHHHHHhhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999763 1 1234455677778899999999999987433222345555566677789999999887664
Q ss_pred -----hCCChHHHHHHHHHHhhHHHHHHHHHHHHHhCCCCChhh---HHHHHHHHHHHH----HHHHHHHHhhc
Q 001810 923 -----FGVSVISAIRTGLLLAPGGEFAFVAFGEAVNQVCFQPHT---VFLIPNGISIYL----QLIMIFFFFNC 984 (1010)
Q Consensus 923 -----~gl~~real~IGl~LaprG~vaLVLa~iAls~GiIs~~~---lVvlvVVlS~II----tPiL~~l~~~~ 984 (1010)
.++++++...+++ .++||.+++.++...-..+.-..+. .++.+|++|+++ .|++.+++..+
T Consensus 346 ~~~~~~~~~~~e~~il~w-~GlRGaVa~aLAl~l~~~~~~~~~~i~~~t~~VVl~TvlvqG~T~~pl~~~L~l~ 418 (559)
T TIGR00840 346 NEFRPVEIPYKDQLVIFY-AGLRGAVAFALALLLDEKIFPYKFLFVTTTLVVVFFTVIFQGGTIKPLVEVLKVK 418 (559)
T ss_pred HHhccCCCChhhhhheee-eccccHHHHHHHHhCCCCCcchHHHHHHHHHeeehHHHHHHHhhHHHHHHHhCCC
Confidence 3578999999998 5999999998875432222222222 333444445544 46666665443
No 15
>COG3263 NhaP-type Na+/H+ and K+/H+ antiporters with a unique C-terminal domain [Inorganic ion transport and metabolism]
Probab=99.96 E-value=3.9e-27 Score=262.41 Aligned_cols=357 Identities=20% Similarity=0.203 Sum_probs=296.1
Q ss_pred HHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHhhccccccccc--CchhHHHHHHHHHHHHHHHHhhcCChhHHHhchhh
Q 001810 606 VLWLLLASVIFVPIFQKIPGGSPVLGYLAAGILIGPYGLSIIR--HVHGTKAIAEFGVVFLLFNIGLELSVERLSSMKKY 683 (1010)
Q Consensus 606 illLLl~A~ilg~Ll~Rl~gLP~vVG~ILaGILLGP~gLglI~--~~~~le~LaeLGLi~LLF~aGLEidl~~Lrr~~k~ 683 (1010)
-.++++.+.+...+..|+ |.|-.+.++..|++.|--++|.|+ +.+....+..++++.|+|..|+.++++.+|...++
T Consensus 12 gsvlvivsif~s~~ssrf-GvP~LllFl~iGm~aG~dGlg~I~fdNy~~Ay~vg~lALaiILfdgG~~T~lss~r~a~~p 90 (574)
T COG3263 12 GSVLVIVSIFSSLISSRF-GVPLLLLFLSIGMLAGVDGLGGIEFDNYPFAYMVGNLALAIILFDGGFGTQLSSFRVAAGP 90 (574)
T ss_pred HHHHHHHHHHHHHHHHHc-CchHHHHHHHHHHHcCCCcccccccCccHHHHHHHHHHHHHHhhcCccCCcHHHHHHHhhh
Confidence 347888899999999999 999999999999999998888765 34456789999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHhhhcccCcHHHHHHHHHHcCCCCChhhHHHHHHHHhHHHHHHHHH-
Q 001810 684 VFGLGSAQVLVTAVVVGLVAHFVSGLPGPASIVIGNGLALSSTAVVLQVLQERGESTSRHGRATFSVLLFQDLAVVVLL- 762 (1010)
Q Consensus 684 il~LAlv~vllt~~~Vg~la~~l~Gls~~~ALLLGaILSaTSpAVvv~IL~elg~l~s~vGrLlL~~SllnDi~aIVLf- 762 (1010)
.+.++.+++++|....|.+++|+++++|..++++|+++..||.+.+..+|++.+ ++.+++.++..+|.-||-+++++-
T Consensus 91 alsLATlGVl~Ts~Ltg~aA~~ll~l~wle~~LiGAiVgSTDAAAVF~lL~~~n-l~erv~stLEiESGtNDPmAvfLTi 169 (574)
T COG3263 91 ALSLATLGVLITSGLTGVAAAYLLNLDWLEGLLIGAIVGSTDAAAVFSLLGGKN-LNERVASTLEIESGSNDPMAVFLTI 169 (574)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHhhccccHHHHHHHHccCC-hhhhhhhhEEeecCCCCceeeehhH
Confidence 999999999999999999999999999999999999999999999999998888 688999999999999999888876
Q ss_pred HHHHhhcCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHh
Q 001810 763 ILIPLISPNSSKGGVGFQAIAEALGVAAVKAAVAITAIIAGGRLLLRPIYKQIAENQNAEIFSANTLLVILGTSLLTARA 842 (1010)
Q Consensus 763 ali~~ls~~~s~g~isl~~I~~~Lg~~ll~vilgiii~llvg~~llr~llr~i~~~~~~ei~l~ltLll~f~~~llAe~l 842 (1010)
+++..+.... ++.++..+. .++..+-++++.++..| ++..++.+++. -+..++..+.+...+.+|.+++.+
T Consensus 170 tlieli~~ge--t~l~~~~ll----~f~~q~glG~l~G~~gg-~l~~~~Inr~n--Ld~GL~pil~la~~Ll~fs~t~ai 240 (574)
T COG3263 170 TLIELIAGGE--TNLSWGFLL----GFLQQFGLGLLLGLGGG-KLLLQLINRIN--LDSGLYPILALAGGLLIFSLTGAI 240 (574)
T ss_pred HHHHHHhccc--cccCHHHHH----HHHHHhhHHHHHHHHHH-HHHHHHHHhhc--cccchhHHHHHHHHHHHHHHHHHh
Confidence 4555554432 123443222 23334444555555555 34444555542 234455566778888889999999
Q ss_pred chhHHHHHHHHHHHcCCCc--hhHHHHHHHHhHHHHHHHHHHHHhhcccChhhhhhh-hhhHHHHHHHHHHHHHHHHHHH
Q 001810 843 GLSMALGAFLAGLLLAETE--FSLQVESDIAPYRGLLLGLFFMTVGMSIDPKLLLSN-FPVITGALGLLIGGKTILVALV 919 (1010)
Q Consensus 843 GlSgvLGAFiAGLiLs~~~--~~~~L~e~l~~i~~~f~PLFFVlIGl~Ldl~~L~~~-~~~iilillvvil~K~l~v~l~ 919 (1010)
|.|++++.+++|++++|.+ .++.+.+..+.+.++...+.|..+|+.+.++.++.. .+.+++.+...++.|++.+|+.
T Consensus 241 GGsG~LaVYl~Gll~GN~~i~~r~~I~~f~dG~twlaQI~MFlvLGLLvtPsql~~iavPailL~l~mifvaRP~aV~l~ 320 (574)
T COG3263 241 GGSGILAVYLAGLLLGNRPIRARHGILRFFDGLAWLAQILMFLVLGLLVTPSQLLPIAIPAILLSLWMIFVARPLAVFLG 320 (574)
T ss_pred cCcccHHHHHHHHHhCCCcchhHHHHHHHhccHHHHHHHHHHHHHHHhcCHhhhhHhhHHHHHHHHHHHHHHhHHHHHHh
Confidence 9999999999999999976 456788888889999999999999999999887653 4556667778889999999999
Q ss_pred HHhhCCChHHHHHHHHHHhhHHHHHHHHHHHHHhCCCCChhh---HHHHHHHHHHHHH
Q 001810 920 GRLFGVSVISAIRTGLLLAPGGEFAFVAFGEAVNQVCFQPHT---VFLIPNGISIYLQ 974 (1010)
Q Consensus 920 ~~~~gl~~real~IGl~LaprG~vaLVLa~iAls~GiIs~~~---lVvlvVVlS~IIt 974 (1010)
..-++++++|.++++| .+-||.+.++++....-.|.-+.+. +.+.+|.+|.++-
T Consensus 321 l~Pfrf~~~Ek~fvSW-vGLRGAv~IilAifpm~aglena~l~FNvAF~VVLvSlliQ 377 (574)
T COG3263 321 LIPFRFNRREKLFVSW-VGLRGAVPIILAIFPMMAGLENARLFFNVAFFVVLVSLLIQ 377 (574)
T ss_pred hcccccCccchheeeh-hhcccchhhhHhhhHHhcCCccceEEeehhHHHHHHHHHHc
Confidence 9999999999999999 5999999999999999999888777 5677777787763
No 16
>KOG1965 consensus Sodium/hydrogen exchanger protein [Inorganic ion transport and metabolism]
Probab=99.92 E-value=8.1e-24 Score=245.14 Aligned_cols=380 Identities=15% Similarity=0.134 Sum_probs=271.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCC---CchHHHHHHHHHhhcccccc----ccc--C---chhHHHHHHHHHHHHHHHH
Q 001810 601 ASLFDVLWLLLASVIFVPIFQKIPG---GSPVLGYLAAGILIGPYGLS----IIR--H---VHGTKAIAEFGVVFLLFNI 668 (1010)
Q Consensus 601 ~~Ll~illLLl~A~ilg~Ll~Rl~g---LP~vVG~ILaGILLGP~gLg----lI~--~---~~~le~LaeLGLi~LLF~a 668 (1010)
..++.++.+++++.++++++++- | +|..+..++.|+++|-.... ... . ....+.+..+.+++|+|..
T Consensus 35 ~al~~~i~lL~l~iv~~hll~~~-R~~~l~Esv~~l~iGl~vG~vi~~~~~~~s~~~~~~~~f~~~~ff~vLLPpiif~s 113 (575)
T KOG1965|consen 35 VALLFFILLLVLCIVLGHLLEET-RFRWLPESVAALFIGLLVGLVIRYSSGGKSSRGKRILVFSPDLFFLVLLPPIIFNS 113 (575)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHHhhhcCCCcccccceeEEecccHHHHHhhchhhhcc
Confidence 44666778888899999999987 6 89999999999999943211 111 0 1112477888899999999
Q ss_pred hhcCChhHHHhchhhHHHHHHHHHHHHHHHHHHHHHHh------cCCChHHHHHHhhhcccCcHHHHHHHHHHcCCCCCh
Q 001810 669 GLELSVERLSSMKKYVFGLGSAQVLVTAVVVGLVAHFV------SGLPGPASIVIGNGLALSSTAVVLQVLQERGESTSR 742 (1010)
Q Consensus 669 GLEidl~~Lrr~~k~il~LAlv~vllt~~~Vg~la~~l------~Gls~~~ALLLGaILSaTSpAVvv~IL~elg~l~s~ 742 (1010)
|++++.+.+++|...++.+++.++++.++++|..++++ .+++|..++++|+++|+|||+.+++|+++++ .+..
T Consensus 114 gy~l~k~~fF~n~~si~~fa~~Gt~IS~~~ig~gv~~~~~~~~~~~~~f~d~L~fGaliSATDPVtvLaIfnel~-vd~~ 192 (575)
T KOG1965|consen 114 GYSLKKKQFFRNIGSILLFAIFGTFISAVIIGAGVYLLGFGLLIYDLSFKDCLAFGALISATDPVTVLAIFNELG-VDPK 192 (575)
T ss_pred cceechhhhhhhhHHHHHhhhcceeeehhHHhhHHHHHhcccccccccHHHHHHHhhHhcccCchHHHHHHHHhC-CCcc
Confidence 99999999999999999999999998888888887766 3678999999999999999999999999999 5778
Q ss_pred hhHHHHHHHHhHHHHHHHHHHHHHhhcCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchh
Q 001810 743 HGRATFSVLLFQDLAVVVLLILIPLISPNSSKGGVGFQAIAEALGVAAVKAAVAITAIIAGGRLLLRPIYKQIAENQNAE 822 (1010)
Q Consensus 743 vGrLlL~~SllnDi~aIVLfali~~ls~~~s~g~isl~~I~~~Lg~~ll~vilgiii~llvg~~llr~llr~i~~~~~~e 822 (1010)
+..++.|++++||+.++|++..+..+..... +.......++.++...++...+++.+| ++...+++.+.-++.+.
T Consensus 193 Ly~LVFGESvLNDAvsIVlf~~i~~~~~~~~----~~~~~~~~ig~Fl~~F~gS~~lGv~~G-lisA~~lK~~~l~~~~~ 267 (575)
T KOG1965|consen 193 LYTLVFGESVLNDAVSIVLFNTIQKFQLGSL----NDWTAFSAIGNFLYTFFGSLGLGVAIG-LISALVLKFLYLRRTPS 267 (575)
T ss_pred eeeeeecchhccchhHHHHHHHHHHHccCCc----hhhhHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhcCCcH
Confidence 8999999999999999999977666654321 111222344444444444444444444 23333344444334445
Q ss_pred HHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHcCCCc-------hhHHHHHHHHhHHHHHHHHHHHHhhccc-Chhhh
Q 001810 823 IFSANTLLVILGTSLLTARAGLSMALGAFLAGLLLAETE-------FSLQVESDIAPYRGLLLGLFFMTVGMSI-DPKLL 894 (1010)
Q Consensus 823 i~l~ltLll~f~~~llAe~lGlSgvLGAFiAGLiLs~~~-------~~~~L~e~l~~i~~~f~PLFFVlIGl~L-dl~~L 894 (1010)
....+++++.+..|++||.+|+||+++.+++|+++++.. -+....+.++.+..+-..+.|+++|+.+ +...+
T Consensus 268 lE~al~ll~sY~sY~lAE~~~lSGIvtVlFcGI~msHYt~~NlS~~Sqit~kh~f~~lsflAEtfIF~Y~Gl~~f~~~k~ 347 (575)
T KOG1965|consen 268 LESALMLLMSYLSYLLAEGCGLSGIVTVLFCGIVMSHYTYHNLSGESQITTKHFFRTLSFLAETFIFIYLGLSAFDFQKH 347 (575)
T ss_pred HHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccce
Confidence 556788999999999999999999999999999999742 2345566777777888999999999743 44444
Q ss_pred hhh-hhhHHHHHHHHHHHHHHHHHHHHHhhCCChHH----------HHHHHHHHhhHHHHHHHHHHHH-HhCCC-CChhh
Q 001810 895 LSN-FPVITGALGLLIGGKTILVALVGRLFGVSVIS----------AIRTGLLLAPGGEFAFVAFGEA-VNQVC-FQPHT 961 (1010)
Q Consensus 895 ~~~-~~~iilillvvil~K~l~v~l~~~~~gl~~re----------al~IGl~LaprG~vaLVLa~iA-ls~Gi-Is~~~ 961 (1010)
.+. .++++...++++++|.+-+|...++.++.+|. -..++|.-..||.+++.++.-- .+.+- .+..+
T Consensus 348 ~~~~~~fv~~~~vlV~lgRa~nvfPLs~L~N~~rr~k~~~~i~~~~q~~~~w~g~lRGAvs~ALa~~~~~~~~~~~~q~i 427 (575)
T KOG1965|consen 348 VYKSLQFVFGAGVLVLLGRAANVFPLSFLLNLFRRHKECDLIDDKYQVIMWWAGGLRGAVSFALALGDFTDSPHTGGQTI 427 (575)
T ss_pred eeechHHHHHHHHHHHHHHHHHhccHHHHHHHHhccccccccChHHhhHhHhhhhhhHHHHHHHHhhhccccccccccEE
Confidence 433 34677778888999999999988876554443 3455555458999998887521 11110 11112
Q ss_pred --HHHHHHHHHHHH----HHHHHHHHhhcccc
Q 001810 962 --VFLIPNGISIYL----QLIMIFFFFNCGLL 987 (1010)
Q Consensus 962 --lVvlvVVlS~II----tPiL~~l~~~~~r~ 987 (1010)
..+.+|++|+++ |.+++++..++...
T Consensus 428 ~tttl~vVlfT~lv~Gg~T~pml~~L~~~~~~ 459 (575)
T KOG1965|consen 428 FTTTLVVVLFTVLVFGGSTKPMLSYLMISVGV 459 (575)
T ss_pred EEeeeeeeeeeeeeeCCccHHHHHHhcccccc
Confidence 234444445443 56666665555443
No 17
>KOG4505 consensus Na+/H+ antiporter [Inorganic ion transport and metabolism]
Probab=99.82 E-value=2.9e-18 Score=186.69 Aligned_cols=335 Identities=17% Similarity=0.116 Sum_probs=237.8
Q ss_pred HHHHHHHHHHHhcCCCchHHHHHHHHHhhcccccccccCc------hhHHHHHHHHHHHHHHHHhhcCChhHHHhchhhH
Q 001810 611 LASVIFVPIFQKIPGGSPVLGYLAAGILIGPYGLSIIRHV------HGTKAIAEFGVVFLLFNIGLELSVERLSSMKKYV 684 (1010)
Q Consensus 611 l~A~ilg~Ll~Rl~gLP~vVG~ILaGILLGP~gLglI~~~------~~le~LaeLGLi~LLF~aGLEidl~~Lrr~~k~i 684 (1010)
+++...-++=.++ -+...+.-.+.|+++||+++++..+. ....-+..+.+..=.|.+|+|++...+.++|+++
T Consensus 24 lF~l~S~yikekL-llgEa~va~itGlI~Gphvlnlfdp~~wgn~d~it~ei~RvvLcvqvfava~eLPr~Y~l~~w~Si 102 (467)
T KOG4505|consen 24 LFGLASLYIKEKL-LLGEATVAVITGLIFGPHVLNLFDPNSWGNKDYITYEISRVVLCVQVFAVAMELPRAYMLEHWRSI 102 (467)
T ss_pred HHHHHHHHHHHhH-hccchHHhhhhheeechhhhhhcCCccccCcchhhhhhhhhhHhHHHHHHHHhccHHHHHHHHHHH
Confidence 3344334444455 46666777889999999999887642 2345677888888899999999999999999998
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-hcCCChHHHHHHhhhcccCcHHHHHHHHHHc---CCCCChhhHHHHHHHHhHHHHHHH
Q 001810 685 FGLGSAQVLVTAVVVGLVAHF-VSGLPGPASIVIGNGLALSSTAVVLQVLQER---GESTSRHGRATFSVLLFQDLAVVV 760 (1010)
Q Consensus 685 l~LAlv~vllt~~~Vg~la~~-l~Gls~~~ALLLGaILSaTSpAVvv~IL~el---g~l~s~vGrLlL~~SllnDi~aIV 760 (1010)
+++-.--++.-.++.+.++|. +++++...++++++++.+|||....+++.+. +..|.++..++.+++..||.+++.
T Consensus 103 ~vlllpVmi~gwlvs~~fvy~l~p~lnf~~Sl~iaaCiTaTDPiLsssIV~~g~~akrvPeriR~lL~AESGcNDGMaip 182 (467)
T KOG4505|consen 103 FVLLLPVMIIGWLVSFGFVYALIPNLNFLTSLLIAACITATDPILSSSIVGGGKFAKRVPERIRNLLAAESGCNDGMAIP 182 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHccCCchhHHHHHhcCchHhhhChHHHHHHHHHhcCCCCCcchh
Confidence 766443333323333333343 4699999999999999999999999998743 457788899999999999999998
Q ss_pred HHHHHH-hhcCCCC-CCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--chhHHHHHHHHHHHHHH
Q 001810 761 LLILIP-LISPNSS-KGGVGFQAIAEALGVAAVKAAVAITAIIAGGRLLLRPIYKQIAENQ--NAEIFSANTLLVILGTS 836 (1010)
Q Consensus 761 Lfali~-~ls~~~s-~g~isl~~I~~~Lg~~ll~vilgiii~llvg~~llr~llr~i~~~~--~~ei~l~ltLll~f~~~ 836 (1010)
++.+.. .+..... .+.-+|. ....+.....+.+++.++| ++.|..+++..++. +.+.|...-+.+++.+.
T Consensus 183 flflai~Ll~h~~~r~~~rdwv-----~~~iLyec~fg~llG~vIG-~l~r~~lk~aekkrlid~eSfl~~~vvl~lfc~ 256 (467)
T KOG4505|consen 183 FLFLAIDLLRHKPRRKAGRDWV-----CDNILYECFFGCLLGCVIG-YLSRQGLKFAEKKRLIDRESFLIFYVVLALFCM 256 (467)
T ss_pred HHHHHHHHHhcCchhccCCcee-----hhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhccccHHHHHHHHHHHHHHHh
Confidence 874432 2222111 1222221 2223334455666666666 66777777766543 67778777788888888
Q ss_pred HHHHHhchhHHHHHHHHHHHcCCCc-hhHHHH-HHHHhH-HHHHHHHHHHHhhcccChhhhhhh------hhhHHHHHHH
Q 001810 837 LLTARAGLSMALGAFLAGLLLAETE-FSLQVE-SDIAPY-RGLLLGLFFMTVGMSIDPKLLLSN------FPVITGALGL 907 (1010)
Q Consensus 837 llAe~lGlSgvLGAFiAGLiLs~~~-~~~~L~-e~l~~i-~~~f~PLFFVlIGl~Ldl~~L~~~------~~~iilillv 907 (1010)
.+.+.+|++-++-.|.||+++++.+ +.++.. ..+..+ ..+++-.||++.|..+|++.++.. |..+++.+.+
T Consensus 257 gigtiiGvddLl~sFfAGi~Fswd~wFsk~t~~s~v~~viD~lls~sfF~yfGaiipwsqFn~s~~gl~vwrlvilsi~i 336 (467)
T KOG4505|consen 257 GIGTIIGVDDLLVSFFAGIVFSWDEWFSKKTKESRVSEVIDLLLSLSFFLYFGAIIPWSQFNLSVEGLPVWRLVILSITI 336 (467)
T ss_pred hhhheechhHHHHHHHhhhhcchhHHhhhhhhhccHHHHHHHHHHHHHHHHhccccchhhcCCcccCchHHHHHHHHHHH
Confidence 8999999999999999999999853 444433 244444 568888999999999999888653 4444444455
Q ss_pred HHHHHHHHHHHHHHhhC--CChHHHHHHHHHHhhHHHHHHHHHHHHHh
Q 001810 908 LIGGKTILVALVGRLFG--VSVISAIRTGLLLAPGGEFAFVAFGEAVN 953 (1010)
Q Consensus 908 vil~K~l~v~l~~~~~g--l~~real~IGl~LaprG~vaLVLa~iAls 953 (1010)
+++-|+..+++.-.+.. .+|||++++|. .+|.|.-++..+.++..
T Consensus 337 if~RRip~v~l~kp~iPdikswkEALFvGh-FGPIGVgAly~allar~ 383 (467)
T KOG4505|consen 337 IFIRRIPAVYLMKPLIPDIKSWKEALFVGH-FGPIGVGALYYALLARK 383 (467)
T ss_pred HHhcccceEEEeccCCcchhhHHHHHHhcc-CCCccHHHHHHHHHHHh
Confidence 55556666665443322 37999999998 79999999888777653
No 18
>PRK14853 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=99.72 E-value=3.3e-14 Score=163.12 Aligned_cols=301 Identities=18% Similarity=0.199 Sum_probs=198.0
Q ss_pred hhHHHHHHHHHHHHHHHHhhcCChhHHH----hchhhH--HHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHhhhcccC
Q 001810 651 HGTKAIAEFGVVFLLFNIGLELSVERLS----SMKKYV--FGLGSAQVLVTAVVVGLVAHFVSGLPGPASIVIGNGLALS 724 (1010)
Q Consensus 651 ~~le~LaeLGLi~LLF~aGLEidl~~Lr----r~~k~i--l~LAlv~vllt~~~Vg~la~~l~Gls~~~ALLLGaILSaT 724 (1010)
...+.+.+..+.+++|.+|+|+..+.+. +.++.. +.-++.+++++. + +|+.++.....+.-=-++-++|
T Consensus 61 ~l~~wiNDgLMaiFFf~vGLEiKrE~~~GeL~~~~~a~lP~~aAlGGm~vPa-l----iy~~~n~~~~~~~~GW~Ip~AT 135 (423)
T PRK14853 61 SLGTWAADGLLAIFFFVVGLELKREFVAGDLRDPSRAALPVAAALGGMIVPA-L----IYVAVNLAGGGALRGWAIPTAT 135 (423)
T ss_pred CHHHHHHHhhHHHHHHHHHHHHhHHHhccchhhHHHHHHHHHHHHHhHHHHH-H----HHHHHhCCchhhhhhhhhhhhh
Confidence 4456777778888999999999776443 222222 344566666653 2 2333332212212222355679
Q ss_pred cHHHHHHHHHHcCC-CCChhhHHHHHHHHhHHHHHHHHHHHHHhhcCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001810 725 STAVVLQVLQERGE-STSRHGRATFSVLLFQDLAVVVLLILIPLISPNSSKGGVGFQAIAEALGVAAVKAAVAITAIIAG 803 (1010)
Q Consensus 725 SpAVvv~IL~elg~-l~s~vGrLlL~~SllnDi~aIVLfali~~ls~~~s~g~isl~~I~~~Lg~~ll~vilgiii~llv 803 (1010)
|.+.++.++..+|. .++..+..+++.+++||+.++++.+++. ++++++.. +.. .++.+++.
T Consensus 136 DIAFalgvLallG~rvp~~l~~FLlaLAIvDDl~AIiVIAlfY-------t~~i~~~~----L~~----a~~~~~~l--- 197 (423)
T PRK14853 136 DIAFALAVLAVIGTHLPSALRTFLLTLAVVDDLLAITVIAVFY-------TSELNLEA----LLL----ALVPLALF--- 197 (423)
T ss_pred HHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHHHHhhhecc-------CCCCCHHH----HHH----HHHHHHHH---
Confidence 99999999999886 4889999999999999999999887642 12333322 111 11111111
Q ss_pred HHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHcCCC------------chhHHHHHHHH
Q 001810 804 GRLLLRPIYKQIAENQNAEIFSANTLLVILGTSLLTARAGLSMALGAFLAGLLLAET------------EFSLQVESDIA 871 (1010)
Q Consensus 804 g~~llr~llr~i~~~~~~ei~l~ltLll~f~~~llAe~lGlSgvLGAFiAGLiLs~~------------~~~~~L~e~l~ 871 (1010)
++.+ +. .-...+. .+++.+++++.....|+|+.+|+|++|+++|.. +..+++++.++
T Consensus 198 --~~l~----~~---~V~~~~~--Y~ilg~~lW~~~~~sGiHatiAGvllGl~IP~~~~~~~~~~~~~~~p~~rle~~L~ 266 (423)
T PRK14853 198 --WLLV----QK---RVRKWWL--LLPLGVATWILVHESGVHATVAGVLLGFAVPVLRREGEEGPEAGPGLAEHLEHRLR 266 (423)
T ss_pred --HHHH----Hc---CCchhhH--HHHHHHHHHHHHHHhCCCHHHHHHHHHHhcccccccccccccccCCHHHHHHHHHH
Confidence 1111 10 1111111 122345777889999999999999999999842 22467888999
Q ss_pred hH-HHHHHHHH-HHHhhcccCh-hhhhhhh--hhHHHHHHHHHHHHHHHHHHHHHhh----------CCChHHHHHHHHH
Q 001810 872 PY-RGLLLGLF-FMTVGMSIDP-KLLLSNF--PVITGALGLLIGGKTILVALVGRLF----------GVSVISAIRTGLL 936 (1010)
Q Consensus 872 ~i-~~~f~PLF-FVlIGl~Ldl-~~L~~~~--~~iilillvvil~K~l~v~l~~~~~----------gl~~real~IGl~ 936 (1010)
++ ..+++|+| |...|.+++. ..+...+ +..+.+++..+++|+++++..++.. +.+|++-..+|+.
T Consensus 267 p~V~~~ILPLFAFANaGV~l~~~~~~~~~~~~pv~lgI~lgL~vGK~lGI~~~~~l~~k~~~~~lP~~~~~~~l~gv~~L 346 (423)
T PRK14853 267 PLSAGVAVPVFAFFSAGVAIGGLSGLGAALTDPIVLGVVLGLVVGKPIGIFGTTYLLTKFTRASLDDDLTWIDVFGVALL 346 (423)
T ss_pred HHHHHHHHHHHHHHHhhheecCchhHHHHhhchHHHHHHHHHHHHhHHHHHHHHHHHHHhCcCCCCCCCCHHHHHHHHHH
Confidence 98 47889999 9999999976 4342222 3667788899999999998887763 5688888888876
Q ss_pred HhhHHHHHHHHHHHHHh-CCCCChhh--HHHHHHHHHHHHHHHHHHHHhhcc
Q 001810 937 LAPGGEFAFVAFGEAVN-QVCFQPHT--VFLIPNGISIYLQLIMIFFFFNCG 985 (1010)
Q Consensus 937 LaprG~vaLVLa~iAls-~GiIs~~~--lVvlvVVlS~IItPiL~~l~~~~~ 985 (1010)
-+..=++++.++.++++ .+..-.+. -+++..+++.+++-++++...++.
T Consensus 347 ~GIGFTmSlFI~~LAf~~~~~~~~~aKigil~~S~~s~~~G~~~l~~~~~~~ 398 (423)
T PRK14853 347 AGIGFTVSLLIGELAFGGGSARDDAVKVGVLTGSLIAALLASVLLRLRNRKY 398 (423)
T ss_pred HHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 55555788888999984 22111222 577888888888888887754443
No 19
>KOG1966 consensus Sodium/hydrogen exchanger protein [Inorganic ion transport and metabolism]
Probab=99.70 E-value=3.2e-18 Score=198.14 Aligned_cols=316 Identities=14% Similarity=0.078 Sum_probs=214.6
Q ss_pred CchHHHHHHHHHhhccccccc--ccC-chhHHHHHHHHHHHHHHHHhhcCChhHHHhchhhHHHHHHHHHHHHHHHHHHH
Q 001810 626 GSPVLGYLAAGILIGPYGLSI--IRH-VHGTKAIAEFGVVFLLFNIGLELSVERLSSMKKYVFGLGSAQVLVTAVVVGLV 702 (1010)
Q Consensus 626 LP~vVG~ILaGILLGP~gLgl--I~~-~~~le~LaeLGLi~LLF~aGLEidl~~Lrr~~k~il~LAlv~vllt~~~Vg~l 702 (1010)
+|.-...|+.|+++|-...+. +.+ .-..+.|....+++|+|-+|+-++-+.+..|...++..+++|.+.-++.+|..
T Consensus 68 ~PES~lLI~~Gl~lG~ii~~~~~~~~~~L~s~vFFlyLLPPIvlDAGYfMp~r~Ff~NlgtILlfAVvGTi~Na~~~g~s 147 (670)
T KOG1966|consen 68 VPESCLLIILGLVLGGIIKALATIAPFFLESDVFFLYLLPPIVLDAGYFMPNRAFFENLGTILLFAVVGTIWNAFTIGAS 147 (670)
T ss_pred CchhHHHHHHHHHHHHHHHhhhccccccccccchhhhhcCHHHhcccccCccHHHHhccchhhhHHHHHHHHHHHHHHHH
Confidence 677788899999998543222 211 11235666777889999999999999999999999999999998776666665
Q ss_pred HHHh-----cC--CChHHHHHHhhhcccCcHHHHHHHHHHcCCCCChhhHHHHHHHHhHHHHHHHHHHHHHhhcCCCCCC
Q 001810 703 AHFV-----SG--LPGPASIVIGNGLALSSTAVVLQVLQERGESTSRHGRATFSVLLFQDLAVVVLLILIPLISPNSSKG 775 (1010)
Q Consensus 703 a~~l-----~G--ls~~~ALLLGaILSaTSpAVvv~IL~elg~l~s~vGrLlL~~SllnDi~aIVLfali~~ls~~~s~g 775 (1010)
++.+ +| .+...-+++|.++|+.||+.++.+..|.. .+.-+--++.|+|++||...++++-+...+....+ .
T Consensus 148 L~~i~~~glf~~~~glld~LlFgSLIsAVDPVAVLaVFEEih-VNe~LfI~VFGESLlNDaVTVVLY~~f~sf~~ig~-~ 225 (670)
T KOG1966|consen 148 LYAISLSGLFGMSIGLLDILLFGSLISAVDPVAVLAVFEEIH-VNEVLFIIVFGESLLNDAVTVVLYNMFISFVEIGS-D 225 (670)
T ss_pred HHHHHHhhhcCCCchHHHHHHHHHHHHhcCchhhhhhhhhhc-cccEEEeeeehhhhhcCceEEehHHHHHHHHHhcc-c
Confidence 4432 45 45788999999999999999999999999 57788889999999999999999843322221100 0
Q ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHH
Q 001810 776 GVGFQAIAEALGVAAVKAAVAITAIIAGGRLLLRPIYKQIAENQNAEIFSANTLLVILGTSLLTARAGLSMALGAFLAGL 855 (1010)
Q Consensus 776 ~isl~~I~~~Lg~~ll~vilgiii~llvg~~llr~llr~i~~~~~~ei~l~ltLll~f~~~llAe~lGlSgvLGAFiAGL 855 (1010)
++........+..++...++|+++|++++ ++.....++..+-+- +...+.+++++.+|+.+|.+|+|+++|..++|+
T Consensus 226 n~~~~d~~~G~~sFfVVslGG~lvGivfa-fl~sl~tkft~~vrv--iePvfif~~pYlaYL~aEm~hlSgIlAii~CG~ 302 (670)
T KOG1966|consen 226 NLTTIDYVLGVVSFFVVSLGGALVGIVFA-FLASLVTKFTKHVRV--LEPVFIFLLPYLAYLTAEMFHLSGILAIIFCGL 302 (670)
T ss_pred ceeEeeeecceeEEEEEecCchhHHHHHH-HHHHHHHHhhcceee--ecchhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11100000011111111222333333333 222333333322111 122356889999999999999999999999999
Q ss_pred HcCCC---chhHH----HHHHHHhHHHHHHHHHHHHhhcccChhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhC----
Q 001810 856 LLAET---EFSLQ----VESDIAPYRGLLLGLFFMTVGMSIDPKLLLSNFPVITGALGLLIGGKTILVALVGRLFG---- 924 (1010)
Q Consensus 856 iLs~~---~~~~~----L~e~l~~i~~~f~PLFFVlIGl~Ldl~~L~~~~~~iilillvvil~K~l~v~l~~~~~g---- 924 (1010)
.+.++ ....+ +.-....+...-.++.|+++|.+.--....|+|+++.+.++.+++.|++++++.+++.+
T Consensus 303 ~m~~Yv~~Nis~~s~~tvky~~K~lss~sEt~IF~fLGvs~v~~~h~wd~~Fi~~T~~fc~~~R~lgv~~lt~~~N~fr~ 382 (670)
T KOG1966|consen 303 CMKKYVEANISQKSATTVKYFMKMLSSLSETVIFMFLGVSTVSSNHHWDFAFICLTLVFCLIYRAIGVVVLTWFLNKFRM 382 (670)
T ss_pred HHHHHHhcccchHHHHHHHHHHHHHHhccchhhheeehhhhcCCcceeehhhhhhHHHHHHHHHHHHhhhhhhhhhhhhe
Confidence 99864 22222 22333444566688999999998755544556778888888889999999998888753
Q ss_pred --CChHHHHHHHHHHhhHHHHHHHH
Q 001810 925 --VSVISAIRTGLLLAPGGEFAFVA 947 (1010)
Q Consensus 925 --l~~real~IGl~LaprG~vaLVL 947 (1010)
++..+...++.+ +.||.+++.+
T Consensus 383 ~k~~~~DQfimsyG-GLRGAiaF~L 406 (670)
T KOG1966|consen 383 VKLEFVDQFIMSYG-GLRGAIAFGL 406 (670)
T ss_pred eeccccceeeeecC-CcchhhheeE
Confidence 455666666665 6777766544
No 20
>TIGR00773 NhaA Na+/H+ antiporter NhaA. These proteins are members of the NhaA Na+:H+ Antiporter (NhaA) Family (TC. 2.A.33). The Escherichia coli NhaA protein probably functions in the regulation of the internal pH when the external pH is alkaline. It also uses the H+ gradient to expel Na+ from the cell. Its activity is highly pH dependent. Only the E. coli protein is functionally and structurally well characterized.
Probab=99.49 E-value=1.6e-11 Score=138.99 Aligned_cols=291 Identities=19% Similarity=0.161 Sum_probs=178.7
Q ss_pred hhHHHHHHHHHHHHHHHHhhcCChhHHH---hchhh---HHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHhhhcccC
Q 001810 651 HGTKAIAEFGVVFLLFNIGLELSVERLS---SMKKY---VFGLGSAQVLVTAVVVGLVAHFVSGLPGPASIVIGNGLALS 724 (1010)
Q Consensus 651 ~~le~LaeLGLi~LLF~aGLEidl~~Lr---r~~k~---il~LAlv~vllt~~~Vg~la~~l~Gls~~~ALLLGaILSaT 724 (1010)
...+.+.+..+.+++|.+|+|+..+.+. +++|+ .+.-++.+++++.. +|..++.......-=-.+-++|
T Consensus 51 ~l~~wiNDgLMaiFFf~vGlEiKrE~~~GeL~~~~~a~lP~~aA~GGm~vPa~-----iy~~~n~~~~~~~~GW~IP~AT 125 (373)
T TIGR00773 51 SLLHWINDGLMAVFFLLIGLEVKRELLEGALSSLRQAIFPVIAAIGGMIAPAL-----IYLAFNANDPITREGWAIPAAT 125 (373)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhchHHHHH-----HHhheecCCCcccCccccccHH
Confidence 4456677777888999999999988665 33333 23345566665532 2232222111000001244569
Q ss_pred cHHHHHHHHHHcCC-CCChhhHHHHHHHHhHHHHHHHHHHHHHhhcCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001810 725 STAVVLQVLQERGE-STSRHGRATFSVLLFQDLAVVVLLILIPLISPNSSKGGVGFQAIAEALGVAAVKAAVAITAIIAG 803 (1010)
Q Consensus 725 SpAVvv~IL~elg~-l~s~vGrLlL~~SllnDi~aIVLfali~~ls~~~s~g~isl~~I~~~Lg~~ll~vilgiii~llv 803 (1010)
|.+.++.++.=.|. .|......+++.+++||+.++++.+++ ++ .++++.. +.. .++. +.+
T Consensus 126 DiAFalgvlallG~~vP~~lr~FLl~LAIvDDlgaI~vIA~F---Yt----~~i~~~~----L~~-----a~~~---~~~ 186 (373)
T TIGR00773 126 DIAFALGVMALLGKRVPLALKIFLLALAIIDDLGAIVIIALF---YT----NDLSMAA----LLV-----AAVA---IAV 186 (373)
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhHhheeee---cC----CCCCHHH----HHH-----HHHH---HHH
Confidence 99988888875543 567778889999999999999877643 21 2233321 110 1111 111
Q ss_pred HHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHcCCCc-----hhHHHHHHHHhHH-HHH
Q 001810 804 GRLLLRPIYKQIAENQNAEIFSANTLLVILGTSLLTARAGLSMALGAFLAGLLLAETE-----FSLQVESDIAPYR-GLL 877 (1010)
Q Consensus 804 g~~llr~llr~i~~~~~~ei~l~ltLll~f~~~llAe~lGlSgvLGAFiAGLiLs~~~-----~~~~L~e~l~~i~-~~f 877 (1010)
. ++. ++. ...... .+.+ +.+..++.....|+|+.+|+|++|+++|..+ ..+++++.++++. .++
T Consensus 187 l-~~~----~~~---~v~~~~-~y~~-lgvllW~~~~~sGVHatiaGvllGl~iP~~~~~~~~pl~rleh~L~p~v~~li 256 (373)
T TIGR00773 187 L-AVL----NRC---GVRRLG-PYML-VGVILWFAVLKSGVHATLAGVIIGFFIPLKGKKGESPLKRLEHVLHPWVAYLI 256 (373)
T ss_pred H-HHH----HHc---CCchhh-HHHH-HHHHHHHHHHHcCCcHHHHHHHHeeeecccccCCCCHHHHHHHHHHHHHHHHH
Confidence 1 111 111 111111 1222 2233333447899999999999999999742 2467788888885 678
Q ss_pred HHHH-HHHhhcccChhhhhhh-hhhHHHHHHHHHHHHHHHHHHHHHhh----------CCChHHHHHHHHHHhhHHHHHH
Q 001810 878 LGLF-FMTVGMSIDPKLLLSN-FPVITGALGLLIGGKTILVALVGRLF----------GVSVISAIRTGLLLAPGGEFAF 945 (1010)
Q Consensus 878 ~PLF-FVlIGl~Ldl~~L~~~-~~~iilillvvil~K~l~v~l~~~~~----------gl~~real~IGl~LaprG~vaL 945 (1010)
+|+| |+..|.+++...+... .+..+.+++..+++|+++++..++.. +.+|++-.-+|+.-+..=++++
T Consensus 257 lPlFAFanAGv~l~~~~~~~~~~~v~lgI~lgLvvGK~lGI~~~~~l~~kl~~~~lP~~~~w~~~~gv~~L~GIGFTmSl 336 (373)
T TIGR00773 257 LPLFAFANAGVSLQGVSLNGLTSMLPLGIILGLLIGKPLGIFLFSWIAVKLKLAKLPEGINFKQIFAVGVLCGIGFTMSI 336 (373)
T ss_pred HHHHHHHhcCeeeecCcchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 8999 9999999976544321 34567788888999999999988764 4678888888876555557888
Q ss_pred HHHHHHHhCC--CCChhh--HHHHHHHHHHHHHH
Q 001810 946 VAFGEAVNQV--CFQPHT--VFLIPNGISIYLQL 975 (1010)
Q Consensus 946 VLa~iAls~G--iIs~~~--lVvlvVVlS~IItP 975 (1010)
.++.+++... ..-++. -++...+++.+++-
T Consensus 337 fI~~LAf~~~~~~~~~~aKigil~~S~~s~~~g~ 370 (373)
T TIGR00773 337 FIASLAFGSVDPELITWAKLGILLGSTTSAVLGY 370 (373)
T ss_pred HHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888421 111122 45666666665554
No 21
>PRK14856 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=99.37 E-value=2.4e-10 Score=131.40 Aligned_cols=295 Identities=18% Similarity=0.196 Sum_probs=184.5
Q ss_pred hhHHHHHHHHHHHHHHHHhhcCChhHHH---hchhh---HHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHhhhcccC
Q 001810 651 HGTKAIAEFGVVFLLFNIGLELSVERLS---SMKKY---VFGLGSAQVLVTAVVVGLVAHFVSGLPGPASIVIGNGLALS 724 (1010)
Q Consensus 651 ~~le~LaeLGLi~LLF~aGLEidl~~Lr---r~~k~---il~LAlv~vllt~~~Vg~la~~l~Gls~~~ALLLGaILSaT 724 (1010)
...+.+.+..+.+++|.+|+|+..+.+. +++|+ .+.-++.+++++. ++|+.+..+....--. .+-.+|
T Consensus 67 sl~~wINDgLMaiFFf~VGLEIKrE~~~GeLs~~rka~lPi~AAlGGmivPA-----lIY~~~n~~~~~~~GW-gIPmAT 140 (438)
T PRK14856 67 SLHNWIDDVLMALFFLMIGLEIKRELLFGELSSFKKASFPVIAALGGMIAPG-----LIYFFLNADTPSQHGF-GIPMAT 140 (438)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCChHHHHHHHHHHHhccHHHH-----HHHhheecCCCccCcc-ccccHH
Confidence 4456777888889999999999988665 33333 2334556666553 2233332221111111 244569
Q ss_pred cHHHHHHHHHHcCC-CCChhhHHHHHHHHhHHHHHHHHHHHHHhhcCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001810 725 STAVVLQVLQERGE-STSRHGRATFSVLLFQDLAVVVLLILIPLISPNSSKGGVGFQAIAEALGVAAVKAAVAITAIIAG 803 (1010)
Q Consensus 725 SpAVvv~IL~elg~-l~s~vGrLlL~~SllnDi~aIVLfali~~ls~~~s~g~isl~~I~~~Lg~~ll~vilgiii~llv 803 (1010)
|.+.++.++.=.|. .|..+...+++.+++||+.++++.+++ ++ .++.+.. +.. .+++++.+
T Consensus 141 DIAFAlgvLallG~rvP~~LrvFLlaLAIvDDlgAI~VIAlF---Yt----~~i~~~~----L~~-----a~~~~~~l-- 202 (438)
T PRK14856 141 DIAFALGVIMLLGKRVPTALKVFLITLAVADDLGAIVVIALF---YT----TNLKFAW----LLG-----ALGVVLVL-- 202 (438)
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhHhheeee---cC----CCCcHHH----HHH-----HHHHHHHH--
Confidence 99999888876554 566777889999999999999877643 21 2233321 110 11111111
Q ss_pred HHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHcCCCch---------------------
Q 001810 804 GRLLLRPIYKQIAENQNAEIFSANTLLVILGTSLLTARAGLSMALGAFLAGLLLAETEF--------------------- 862 (1010)
Q Consensus 804 g~~llr~llr~i~~~~~~ei~l~ltLll~f~~~llAe~lGlSgvLGAFiAGLiLs~~~~--------------------- 862 (1010)
++. ++..- .+...| +++.+..++....-|+|+.+++++.|+++|..+.
T Consensus 203 --~~l----n~~~v-~~~~~Y----~~~G~~lW~~~l~SGVHaTiAGV~lal~iP~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (438)
T PRK14856 203 --AVL----NRLNV-RSLIPY----LLLGVLLWFCVHQSGIHATIAAVVLAFMIPVKIPKDSKNVELLELGKRYAETSSG 271 (438)
T ss_pred --HHH----HHcCC-ccccHH----HHHHHHHHHHHHHccCcHHHHHHHHHheeecccccccchhhhhhhhhhhhccccc
Confidence 111 11110 111112 3345566777778899999999999999985210
Q ss_pred ------------------------hHHHHHHHHhHH-HHHHHHH-HHHhhcccChhhhhhhhhhHHHHHHHHHHHHHHHH
Q 001810 863 ------------------------SLQVESDIAPYR-GLLLGLF-FMTVGMSIDPKLLLSNFPVITGALGLLIGGKTILV 916 (1010)
Q Consensus 863 ------------------------~~~L~e~l~~i~-~~f~PLF-FVlIGl~Ldl~~L~~~~~~iilillvvil~K~l~v 916 (1010)
.+++++.++|+. .+.+|+| |...|..++.......-+..+.+++.++++|++++
T Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~pl~rleh~L~p~v~f~IlPlFAfaNAGV~l~~~~~~~~~pv~lGI~~GLvvGK~lGI 351 (438)
T PRK14856 272 ALLTKEQQEILHSIEEKASALQSPLERLEHFLAPISGYFIMPLFAFANAGVSVDSSINLEVDKVLLGVILGLCLGKPLGI 351 (438)
T ss_pred cccccchhhhhhhhhhcccccCCHHHHHHHhhhhhhHHhhHHHHHhhcCCceeccchhhccCcHHHHHHHHHHhcchHHH
Confidence 134556677764 4779999 99999998754322223566778889999999999
Q ss_pred HHHHHhh----------CCChHHHHHHHHHHhhHHHHHHHHHHHHHhC--CCCChhh--HHHHHHHHHHHHHHHHHHH
Q 001810 917 ALVGRLF----------GVSVISAIRTGLLLAPGGEFAFVAFGEAVNQ--VCFQPHT--VFLIPNGISIYLQLIMIFF 980 (1010)
Q Consensus 917 ~l~~~~~----------gl~~real~IGl~LaprG~vaLVLa~iAls~--GiIs~~~--lVvlvVVlS~IItPiL~~l 980 (1010)
+..++.. +++|++-.-+|+.-+..=++++.++.+++.. +..-++. -+++..+++.+++-++++.
T Consensus 352 ~~~s~lavkl~~a~lP~g~~w~~l~gv~~LaGIGFTmSLFIa~LAF~~~~~~~~~~aKigIL~gS~lsai~G~~~L~~ 429 (438)
T PRK14856 352 FLITFISEKLKITARPKGISWWHILGAGLLAGIGFTMSMFISNLAFTSEHKDAMEVAKIAILLGSLISGIIGALYLFA 429 (438)
T ss_pred HHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9887763 4678888878875555556888888888843 2121222 5677778888888777774
No 22
>PRK09560 nhaA pH-dependent sodium/proton antiporter; Reviewed
Probab=99.30 E-value=1.9e-09 Score=122.51 Aligned_cols=298 Identities=18% Similarity=0.171 Sum_probs=184.7
Q ss_pred hhHHHHHHHHHHHHHHHHhhcCChhHHH---hchhh---HHHHHHHHHHHHHHHHHHHHHHhcCCChHH-HHHHhhhccc
Q 001810 651 HGTKAIAEFGVVFLLFNIGLELSVERLS---SMKKY---VFGLGSAQVLVTAVVVGLVAHFVSGLPGPA-SIVIGNGLAL 723 (1010)
Q Consensus 651 ~~le~LaeLGLi~LLF~aGLEidl~~Lr---r~~k~---il~LAlv~vllt~~~Vg~la~~l~Gls~~~-ALLLGaILSa 723 (1010)
...+.+.+..+.+++|.+|+|+..+.+. +++|+ .+.-++.+++++.. +|+.+...... .--. .+-.+
T Consensus 58 sl~~wiNDgLMaiFFf~vGLEiKrE~~~GeLs~~r~a~lPi~AAlGGmivPAl-----Iy~~~n~g~~~~~~GW-gIPmA 131 (389)
T PRK09560 58 SLLHWINDGLMAVFFLLVGLEIKRELLEGQLSSWQQRILPAIAAVGGMVVPAL-----IYAAFNYNNPETLRGW-AIPAA 131 (389)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhchHHHHH-----HHheeecCCCcccCcc-ccccH
Confidence 4456677777888999999999988665 33333 23345566665532 23332221000 0111 23456
Q ss_pred CcHHHHHHHHHHcCC-CCChhhHHHHHHHHhHHHHHHHHHHHHHhhcCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHH
Q 001810 724 SSTAVVLQVLQERGE-STSRHGRATFSVLLFQDLAVVVLLILIPLISPNSSKGGVGFQAIAEALGVAAVKAAVAITAIIA 802 (1010)
Q Consensus 724 TSpAVvv~IL~elg~-l~s~vGrLlL~~SllnDi~aIVLfali~~ls~~~s~g~isl~~I~~~Lg~~ll~vilgiii~ll 802 (1010)
||.+.++.++.=.|. .|......+++.+++||+.++++.+++ ++ .++++.. +.. .+++++.+
T Consensus 132 TDIAFAlgvL~llG~rvP~~Lr~FLlaLAIvDDlgAI~VIA~F---Yt----~~i~~~~----L~~-----a~~~~~~l- 194 (389)
T PRK09560 132 TDIAFALGVLALLGKRVPVSLKVFLLALAIIDDLGAIVIIALF---YT----SDLSLPA----LAL-----AAIAIAVL- 194 (389)
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhhHhheeee---cC----CCCCHHH----HHH-----HHHHHHHH-
Confidence 999998888875543 566778889999999999999877643 21 2233321 110 11111111
Q ss_pred HHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHcCCCc-------hhHHHHHHHHhHHH
Q 001810 803 GGRLLLRPIYKQIAENQNAEIFSANTLLVILGTSLLTARAGLSMALGAFLAGLLLAETE-------FSLQVESDIAPYRG 875 (1010)
Q Consensus 803 vg~~llr~llr~i~~~~~~ei~l~ltLll~f~~~llAe~lGlSgvLGAFiAGLiLs~~~-------~~~~L~e~l~~i~~ 875 (1010)
++. ++.. -.+...+ +.+.+..++....-|+|+.++.++.|+++|..+ ..+++++.++|+..
T Consensus 195 ---~~l----n~~~-v~~~~~Y----~~~G~~lW~~~l~SGvHaTiAGV~la~~iP~~~~~~~~~~pl~rleh~L~p~v~ 262 (389)
T PRK09560 195 ---FLL----NRLG-VTKLTPY----LIVGAILWFAVLKSGVHATLAGVVLAFCIPLKGKKGDEESPLHHLEHALHPWVA 262 (389)
T ss_pred ---HHH----HHcC-CccchHH----HHHHHHHHHHHHHccccHHHHHHHHHHhccccCCCCCCCCHHHHHHHHhhhhhh
Confidence 111 1111 0111112 334456667777889999999999999999631 13568889999855
Q ss_pred -HHHHHH-HHHhhcccChhhhhh-hhhhHHHHHHHHHHHHHHHHHHHHHhh----------CCChHHHHHHHHHHhhHHH
Q 001810 876 -LLLGLF-FMTVGMSIDPKLLLS-NFPVITGALGLLIGGKTILVALVGRLF----------GVSVISAIRTGLLLAPGGE 942 (1010)
Q Consensus 876 -~f~PLF-FVlIGl~Ldl~~L~~-~~~~iilillvvil~K~l~v~l~~~~~----------gl~~real~IGl~LaprG~ 942 (1010)
+.+|+| |...|..++-..+.. .-+..+.+++.++++|+++++..++.. +.+|++-.-+|+.-+..=+
T Consensus 263 ~~IlPlFAlaNAGV~l~~~~~~~~~~pv~~gI~~GLv~GK~lGI~~~s~l~vkl~~~~lP~g~~w~~l~gv~~L~GIGFT 342 (389)
T PRK09560 263 FAILPLFAFANAGVSLAGISLSSLTSPVPLGIALGLFLGKQVGVFGFSWLAVKLGLAKLPEGANWKQIYGVSVLCGIGFT 342 (389)
T ss_pred hhhHHHHHhhcCCeeecCCcHHhccCcHHHHHHHHHHhcchHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHH
Confidence 449999 888998884322322 124567788889999999999887763 4678888878876555557
Q ss_pred HHHHHHHHHHh-CCCCChhh--HHHHHHHHHHHHHHHHHHHHhh
Q 001810 943 FAFVAFGEAVN-QVCFQPHT--VFLIPNGISIYLQLIMIFFFFN 983 (1010)
Q Consensus 943 vaLVLa~iAls-~GiIs~~~--lVvlvVVlS~IItPiL~~l~~~ 983 (1010)
+++.++.+++. .+..-++. -++...+++.+++-++.+...+
T Consensus 343 mSLFIa~LAF~~~~~~~~~aKigIL~~S~~aai~g~~~l~~~~~ 386 (389)
T PRK09560 343 MSLFIGSLAFGASEELLTEARLGILLGSLLSAILGYLLLRLTLR 386 (389)
T ss_pred HHHHHHHhhcCCCchhhhHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 88888888884 21111222 4666677777777777766443
No 23
>PRK14855 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=99.29 E-value=2e-09 Score=123.44 Aligned_cols=294 Identities=18% Similarity=0.183 Sum_probs=182.6
Q ss_pred hhHHHHHHHHHHHHHHHHhhcCChhHHH---hchhhH---HHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHhhhcccC
Q 001810 651 HGTKAIAEFGVVFLLFNIGLELSVERLS---SMKKYV---FGLGSAQVLVTAVVVGLVAHFVSGLPGPASIVIGNGLALS 724 (1010)
Q Consensus 651 ~~le~LaeLGLi~LLF~aGLEidl~~Lr---r~~k~i---l~LAlv~vllt~~~Vg~la~~l~Gls~~~ALLLGaILSaT 724 (1010)
...+.+.+..+.+++|.+|+|+..+.+. +++|+. +.-++.+++++. ++|+.+..+....--. .+-++|
T Consensus 62 sl~~wINDgLMaiFFf~VGLEIKrE~l~GeLs~~r~a~lPiiAAlGGmivPA-----lIy~~~n~~~~~~~GW-gIPmAT 135 (423)
T PRK14855 62 SLEHWVNDGLMAVFFLLVGLEIKRELLIGELSSPRQAALAVVAALGGMLVPA-----ALYTALNAGGPGASGW-GVPMAT 135 (423)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCChHHHHHHHHHHHhchHHHH-----HHHheeecCCCccCcc-ccccHH
Confidence 4456677777888999999999988764 333332 334555565543 2233332221111111 244569
Q ss_pred cHHHHHHHHHHcCC-CCChhhHHHHHHHHhHHHHHHHHHHHHHhhcCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001810 725 STAVVLQVLQERGE-STSRHGRATFSVLLFQDLAVVVLLILIPLISPNSSKGGVGFQAIAEALGVAAVKAAVAITAIIAG 803 (1010)
Q Consensus 725 SpAVvv~IL~elg~-l~s~vGrLlL~~SllnDi~aIVLfali~~ls~~~s~g~isl~~I~~~Lg~~ll~vilgiii~llv 803 (1010)
|.+.++.++.=+|. .|..+...+++.+++||+.++++.+++ ++ .++++.. +. +++++..+
T Consensus 136 DIAFAlgvLallG~rvP~~LrvFLlaLAIvDDlgAI~VIAlF---Yt----~~i~~~~----L~-------~a~~~~~~- 196 (423)
T PRK14855 136 DIAFALGVLALLGSRVPLGLKVFLTALAIVDDLGAVLVIALF---YT----SGLNLLA----LL-------LAALTWAL- 196 (423)
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhhhhheeeEee---cC----CCCCHHH----HH-------HHHHHHHH-
Confidence 99999888876654 555677889999999999999876543 21 2233321 11 11111111
Q ss_pred HHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHcCCC--ch-------------------
Q 001810 804 GRLLLRPIYKQIAENQNAEIFSANTLLVILGTSLLTARAGLSMALGAFLAGLLLAET--EF------------------- 862 (1010)
Q Consensus 804 g~~llr~llr~i~~~~~~ei~l~ltLll~f~~~llAe~lGlSgvLGAFiAGLiLs~~--~~------------------- 862 (1010)
. ++. ++.. -.+...| +++.+..++....-|+|+.++.++.|+++|.. +.
T Consensus 197 l-~~l----n~~~-v~~~~~Y----~~~G~~lW~~~l~SGVHaTiAGV~lal~iP~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (423)
T PRK14855 197 A-LLA----GRLG-VTSLKIY----AVLGALLWFFVLKSGLHPTVAGVLLALAVPIRRRDPLPYLASLLDAAAPGRPEVV 266 (423)
T ss_pred H-HHH----HHcC-CccccHH----HHHHHHHHHHHHHhcccHHHHHHHHHHhccccccccchhHHHHHHHhhcccchhh
Confidence 1 111 1111 0111112 33455666777788999999999999999863 10
Q ss_pred -----------------hHHHHHHHHhHH-HHHHHHH-HHHhhcccChhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhh
Q 001810 863 -----------------SLQVESDIAPYR-GLLLGLF-FMTVGMSIDPKLLLSNFPVITGALGLLIGGKTILVALVGRLF 923 (1010)
Q Consensus 863 -----------------~~~L~e~l~~i~-~~f~PLF-FVlIGl~Ldl~~L~~~~~~iilillvvil~K~l~v~l~~~~~ 923 (1010)
.+++++.++|.. .+.+|+| |...|..++-.. .. +..+.+++.++++|+++++..++..
T Consensus 267 ~~~~~~~~~~~~~~~~Pl~rleh~L~p~vaf~IlPlFAfaNAGV~l~~~~-~~--pv~lGI~~GLvvGK~lGI~~~s~la 343 (423)
T PRK14855 267 GARLRDLEDLLERAQSPLHRLEHALHPWSTFLILPVFALFNAGVSVSGGG-LG--TVSLGVFLGLLLGKPLGVVGGAWLA 343 (423)
T ss_pred hHHHHhhhhhccccCCHHHHHHHHhhhhHHHhhHHHHHhhcCCeeecCCC-CC--cHHHHHHHHHHhcchHHHHHHHHHH
Confidence 134666777774 4578998 888999885433 22 4567778888999999999887763
Q ss_pred ----------CCChHHHHHHHHHHhhHHHHHHHHHHHHHhCCCCChhh--HHHHHHHHHHHHHHHHHHHHh
Q 001810 924 ----------GVSVISAIRTGLLLAPGGEFAFVAFGEAVNQVCFQPHT--VFLIPNGISIYLQLIMIFFFF 982 (1010)
Q Consensus 924 ----------gl~~real~IGl~LaprG~vaLVLa~iAls~GiIs~~~--lVvlvVVlS~IItPiL~~l~~ 982 (1010)
+++|++-.-+|+.-+..=++++.++.++++.+..-++. -+++..+++.+++-++++...
T Consensus 344 vkl~~a~lP~g~~w~~l~gv~~LaGIGFTmSLFIa~LAF~~~~~~~~aKigIL~~S~~aai~G~~~L~~~~ 414 (423)
T PRK14855 344 VRLGLASLPRRVNWLHMLGAGLLAGIGFTMSLFISNLAFADAALLTQAKLGVLAASVLAALLGAGWLWWAV 414 (423)
T ss_pred HHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 56888888888765555578888888888533222222 566777777777776666543
No 24
>PRK09561 nhaA pH-dependent sodium/proton antiporter; Reviewed
Probab=99.28 E-value=2e-09 Score=122.18 Aligned_cols=298 Identities=19% Similarity=0.215 Sum_probs=184.5
Q ss_pred hhHHHHHHHHHHHHHHHHhhcCChhHHH---hchhh---HHHHHHHHHHHHHHHHHHHHHHhcCCChHH-HHHHhhhccc
Q 001810 651 HGTKAIAEFGVVFLLFNIGLELSVERLS---SMKKY---VFGLGSAQVLVTAVVVGLVAHFVSGLPGPA-SIVIGNGLAL 723 (1010)
Q Consensus 651 ~~le~LaeLGLi~LLF~aGLEidl~~Lr---r~~k~---il~LAlv~vllt~~~Vg~la~~l~Gls~~~-ALLLGaILSa 723 (1010)
+..+.+.+..+.+++|.+|+|+..+.+. +++|+ .+.-++.+++++.. +|+.++.+... .--. ++-.+
T Consensus 58 ~l~~wiNDgLMaiFFf~vGLEiKrE~~~GeL~~~r~a~lPi~AAlGGmivPAl-----iy~~~n~~~~~~~~GW-aIP~A 131 (388)
T PRK09561 58 PLLLWINDGLMAVFFLLIGLEVKRELLEGSLASRRQAALPVIAAIGGMLVPAL-----IYLLFNYADPVTREGW-AIPAA 131 (388)
T ss_pred cHHHHHHhhHHHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhchHHHHH-----HHhheecCCCcccCcc-ccccH
Confidence 3456677777888999999999988765 33333 23345566665532 23332221110 0111 23456
Q ss_pred CcHHHHHHHHHHcCC-CCChhhHHHHHHHHhHHHHHHHHHHHHHhhcCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHH
Q 001810 724 SSTAVVLQVLQERGE-STSRHGRATFSVLLFQDLAVVVLLILIPLISPNSSKGGVGFQAIAEALGVAAVKAAVAITAIIA 802 (1010)
Q Consensus 724 TSpAVvv~IL~elg~-l~s~vGrLlL~~SllnDi~aIVLfali~~ls~~~s~g~isl~~I~~~Lg~~ll~vilgiii~ll 802 (1010)
||.+.++.++.=.|. .|......+++.+++||+.++++.+++ ++ .++++.. +. ...++.+.+
T Consensus 132 TDIAFalgvlallG~rvP~~LrvFLlaLAIvDDlgAI~VIAlF---Yt----~~i~~~~----L~-----~a~~~~~~l- 194 (388)
T PRK09561 132 TDIAFALGVLALLGSRVPVALKIFLLALAIIDDLGAIVIIALF---YT----SDLSMVS----LG-----VAAVAIAVL- 194 (388)
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhHhheeee---cC----CCccHHH----HH-----HHHHHHHHH-
Confidence 999998888865543 566677889999999999999877643 21 2333321 11 011111111
Q ss_pred HHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHcCCCc-----hhHHHHHHHHhHHH-H
Q 001810 803 GGRLLLRPIYKQIAENQNAEIFSANTLLVILGTSLLTARAGLSMALGAFLAGLLLAETE-----FSLQVESDIAPYRG-L 876 (1010)
Q Consensus 803 vg~~llr~llr~i~~~~~~ei~l~ltLll~f~~~llAe~lGlSgvLGAFiAGLiLs~~~-----~~~~L~e~l~~i~~-~ 876 (1010)
++. ++.. -.+...| +.+.+..++....-|+|+.++.++.|+++|... ..+++++.++|+.. +
T Consensus 195 ---~~l----n~~~-v~~~~~Y----~~~G~~lW~~~l~SGvHaTiAGV~la~~iP~~~~~~~~pl~rleh~L~p~v~~~ 262 (388)
T PRK09561 195 ---AVL----NLCG-VRRTSVY----ILVGVVLWVAVLKSGVHATLAGVIVGFFIPLKEKHGRSPAERLEHGLHPWVAFL 262 (388)
T ss_pred ---HHH----HHcC-CccchHH----HHHHHHHHHHHHHccccHHHHHHHHHhhccccCCCCCCHHHHHHHHhhhhhhhe
Confidence 111 1111 0111112 334556677777889999999999999999731 23578889999854 5
Q ss_pred HHHHH-HHHhhcccChhhhhh-hhhhHHHHHHHHHHHHHHHHHHHHHhh----------CCChHHHHHHHHHHhhHHHHH
Q 001810 877 LLGLF-FMTVGMSIDPKLLLS-NFPVITGALGLLIGGKTILVALVGRLF----------GVSVISAIRTGLLLAPGGEFA 944 (1010)
Q Consensus 877 f~PLF-FVlIGl~Ldl~~L~~-~~~~iilillvvil~K~l~v~l~~~~~----------gl~~real~IGl~LaprG~va 944 (1010)
.+|+| |...|..++-..+.. ..+..+.+++.++++|.++++..++.. +.+|++-..+|+.-+..=+++
T Consensus 263 IlPlFAfaNAGV~l~~~~~~~~~~pv~lgV~~GL~~GK~lGI~~~~~l~vkl~~~~lP~g~~w~~l~gv~~L~GIGFTmS 342 (388)
T PRK09561 263 ILPLFAFANAGVSLQGVTLDGLTSPLPLGIALGLFIGKPLGIFLFSWLAVKLKLAKLPEGTTFKQIYAVGVLCGIGFTMS 342 (388)
T ss_pred eHHHHHhhcCCeeeccCcHHhhcCcHHHHHHHHHHhcchHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 79998 888998884222211 124567778889999999998887763 467888888887655555678
Q ss_pred HHHHHHHHhC--CCCChhh--HHHHHHHHHHHHHHHHHHHHhh
Q 001810 945 FVAFGEAVNQ--VCFQPHT--VFLIPNGISIYLQLIMIFFFFN 983 (1010)
Q Consensus 945 LVLa~iAls~--GiIs~~~--lVvlvVVlS~IItPiL~~l~~~ 983 (1010)
+.++.++++. +..-++. -+++..+++.+++-++++...+
T Consensus 343 LFIa~LAF~~~~~~~~~~aKigIL~~S~~sai~g~~~l~~~~~ 385 (388)
T PRK09561 343 IFIASLAFGGVDPELINYAKLGILIGSLLSAVIGYSWLRKVLP 385 (388)
T ss_pred HHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 8888888852 1111222 4666677788787777765433
No 25
>PRK14854 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=99.25 E-value=5.7e-09 Score=118.25 Aligned_cols=296 Identities=15% Similarity=0.175 Sum_probs=183.9
Q ss_pred hhHHHHHHHHHHHHHHHHhhcCChhHHH---hchhh---HHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHhhhcccC
Q 001810 651 HGTKAIAEFGVVFLLFNIGLELSVERLS---SMKKY---VFGLGSAQVLVTAVVVGLVAHFVSGLPGPASIVIGNGLALS 724 (1010)
Q Consensus 651 ~~le~LaeLGLi~LLF~aGLEidl~~Lr---r~~k~---il~LAlv~vllt~~~Vg~la~~l~Gls~~~ALLLGaILSaT 724 (1010)
...+.+.+..+.+++|.+|+|+..+.+. +++|+ .+.-++.+++++.. + |..++.+....--. .+-++|
T Consensus 55 ~l~~WiNDgLMaiFFf~vGLEiKrE~~~GeLs~~r~a~lP~~AAlGGmivPAl-I----y~~~n~~~~~~~GW-~IP~AT 128 (383)
T PRK14854 55 NLMHWINDGLMAIYFLYIGLEIKREIIVGTLSKPSNIITPAIAAFAGLAMPSL-I----YLSINHDIKVINGW-AIPSAT 128 (383)
T ss_pred cHHHHHHhhHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhchHHHHH-H----HHhhccCCcccCcc-ccccHH
Confidence 4456777777888999999999987654 33333 23345566665532 2 22222211101111 244569
Q ss_pred cHHHHHHHHHHcCC-CCChhhHHHHHHHHhHHHHHHHHHHHHHhhcCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001810 725 STAVVLQVLQERGE-STSRHGRATFSVLLFQDLAVVVLLILIPLISPNSSKGGVGFQAIAEALGVAAVKAAVAITAIIAG 803 (1010)
Q Consensus 725 SpAVvv~IL~elg~-l~s~vGrLlL~~SllnDi~aIVLfali~~ls~~~s~g~isl~~I~~~Lg~~ll~vilgiii~llv 803 (1010)
|.+.++.++.=.|. .|....-.+++.+++||+.++++.+++ ++ .++++.. +. ....++.++
T Consensus 129 DIAFAlgvLallG~rvP~~lrvFLlaLAIvDDlgAI~VIAlF---Yt----~~i~~~~----L~-----~A~~~~~~l-- 190 (383)
T PRK14854 129 DIAFTLGILALLGTRVPAKLKLLVITIAIFDDIAAIAIIAIF---YT----KSLSLLS----LS-----LGTLFILAM-- 190 (383)
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhhHhheeee---cC----CCccHHH----HH-----HHHHHHHHH--
Confidence 99988888875543 566777788888999999999877643 21 2233321 11 011111111
Q ss_pred HHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHcCCCc-----hhHHHHHHHHhH-HHHH
Q 001810 804 GRLLLRPIYKQIAENQNAEIFSANTLLVILGTSLLTARAGLSMALGAFLAGLLLAETE-----FSLQVESDIAPY-RGLL 877 (1010)
Q Consensus 804 g~~llr~llr~i~~~~~~ei~l~ltLll~f~~~llAe~lGlSgvLGAFiAGLiLs~~~-----~~~~L~e~l~~i-~~~f 877 (1010)
++ ++|..+-++...| +.+.+..++....-|+|+.++.++.|+++|... ..+++++.++|+ ..+.
T Consensus 191 --~~----~nr~~~v~~~~~Y----~~~G~~lW~~~l~SGvHaTiAGV~~a~~iP~~~~~~~~pl~rleh~L~p~v~~~I 260 (383)
T PRK14854 191 --II----CNRIFKINRSSVY----VVLGFFAWFCTIKSGVHATLAGFTTALCIPFRENDKDSPANFMEDSLHPWIIYFI 260 (383)
T ss_pred --HH----HHHhcCCceehHH----HHHHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCHHHHHHHHhhchHHHhh
Confidence 11 1111011111122 334556677777889999999999999999731 235788888888 5677
Q ss_pred HHHH-HHHhhcccChhhhhh-hhhhHHHHHHHHHHHHHHHHHHHHHhh----------CCChHHHHHHHHHHhhHHHHHH
Q 001810 878 LGLF-FMTVGMSIDPKLLLS-NFPVITGALGLLIGGKTILVALVGRLF----------GVSVISAIRTGLLLAPGGEFAF 945 (1010)
Q Consensus 878 ~PLF-FVlIGl~Ldl~~L~~-~~~~iilillvvil~K~l~v~l~~~~~----------gl~~real~IGl~LaprG~vaL 945 (1010)
+|+| |...|..++-..+.. ..+..+.+++.++++|.++++..++.. +.+|++-..+|+.-+..=++++
T Consensus 261 lPlFA~aNAGV~l~~~~~~~~~~pv~~GI~~GL~~GK~lGI~~~s~lavkl~~~~lP~g~~w~~l~gv~~L~GIGFTmSL 340 (383)
T PRK14854 261 LPVFAFANAGISFSGISFSILFEPITLGIILGLFVGKQLGIFSILAVFKKLKWFKLGESFSNLQLYGISLLCGIGFTMSL 340 (383)
T ss_pred HHHHHhhcCCeeeccCcHHhhcCcHHHHHHHHHHhcchHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 8998 888998884322211 124567788889999999998887763 4678888888876555557888
Q ss_pred HHHHHHHhCCCCChhh--HHHHHHHHHHHHHHHHHHH
Q 001810 946 VAFGEAVNQVCFQPHT--VFLIPNGISIYLQLIMIFF 980 (1010)
Q Consensus 946 VLa~iAls~GiIs~~~--lVvlvVVlS~IItPiL~~l 980 (1010)
.++.+++..+..-++. -+++..+++.+++-++.+.
T Consensus 341 FIa~LAF~~~~~~~~aKigIL~gS~~aai~G~~~l~~ 377 (383)
T PRK14854 341 FIGVLAFNDTHLLNAIKIGVVVGSVLSGFFGYIVLRF 377 (383)
T ss_pred HHHHhhCCCcchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888532121222 4666677777777777655
No 26
>COG3004 NhaA Na+/H+ antiporter [Inorganic ion transport and metabolism]
Probab=99.14 E-value=4e-08 Score=108.34 Aligned_cols=293 Identities=19% Similarity=0.219 Sum_probs=182.8
Q ss_pred HHHHHHHHHHHHHHhhcCChhHHH---hchhhH---HHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHhhhcccCcHHH
Q 001810 655 AIAEFGVVFLLFNIGLELSVERLS---SMKKYV---FGLGSAQVLVTAVVVGLVAHFVSGLPGPASIVIGNGLALSSTAV 728 (1010)
Q Consensus 655 ~LaeLGLi~LLF~aGLEidl~~Lr---r~~k~i---l~LAlv~vllt~~~Vg~la~~l~Gls~~~ALLLGaILSaTSpAV 728 (1010)
.+-+-.+.++++.+|+|+..+.+. +++++. ..-++.+++++. +.|++++.+-+.+.-=-++-++||.+.
T Consensus 65 WINDgLMAvFFl~iGLEvKrEll~G~L~s~~~a~~P~iAA~GGmi~PA-----liy~~~n~~~p~~~~GWaIP~ATDiAF 139 (390)
T COG3004 65 WINDGLMAVFFLLIGLEVKRELLEGQLSSWRNAAFPVIAAIGGMIAPA-----LIYLALNAGDPATLEGWAIPMATDIAF 139 (390)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHcccccCchhhhhHHHHHhccchhhh-----hHhheeecCChhhhcCcCcccHHHHHH
Confidence 334444566778899999998776 344432 233444454442 234444333222222224566799999
Q ss_pred HHHHHHHcCC-CCChhhHHHHHHHHhHHHHHHHHHHHHHhhcCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001810 729 VLQVLQERGE-STSRHGRATFSVLLFQDLAVVVLLILIPLISPNSSKGGVGFQAIAEALGVAAVKAAVAITAIIAGGRLL 807 (1010)
Q Consensus 729 vv~IL~elg~-l~s~vGrLlL~~SllnDi~aIVLfali~~ls~~~s~g~isl~~I~~~Lg~~ll~vilgiii~llvg~~l 807 (1010)
++.++.=+|. .|+..--.+++.+++||+.+++..+++ +. .+.++.. ++. .++.+.++. .+
T Consensus 140 AlGvlaLLG~rVP~sLKiFLlaLAI~DDlgAIvIIAlF---Yt----~~Ls~~a----l~~------a~~~i~vL~--~l 200 (390)
T COG3004 140 ALGVLALLGSRVPLSLKIFLLALAIIDDLGAIVIIALF---YT----TDLSMAA----LGI------AALAIAVLA--VL 200 (390)
T ss_pred HHHHHHHhcCCCChHHHHHHHHHHHHhhcchhhhhhhh---hc----CCccHHH----HHH------HHHHHHHHH--HH
Confidence 9998876653 677777889999999999998877653 11 1233321 211 111111111 11
Q ss_pred HHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHcCCC-----chhHHHHHHHHhH-HHHHHHHH
Q 001810 808 LRPIYKQIAENQNAEIFSANTLLVILGTSLLTARAGLSMALGAFLAGLLLAET-----EFSLQVESDIAPY-RGLLLGLF 881 (1010)
Q Consensus 808 lr~llr~i~~~~~~ei~l~ltLll~f~~~llAe~lGlSgvLGAFiAGLiLs~~-----~~~~~L~e~l~~i-~~~f~PLF 881 (1010)
.++.-++ . ...+++..+.+..-..-|+|..++.++.|+++|-. ..-+++++.++|. ..+.+|+|
T Consensus 201 -----N~~~v~~-l----~~Y~~~gviLW~~vlkSGVHATLAGVi~~f~IPl~~k~~~spl~~leh~L~pwvaf~IlPlF 270 (390)
T COG3004 201 -----NRLGVRR-L----SPYLLVGVILWIAVLKSGVHATLAGVILAFFIPLKTKEGESPLERLEHALHPWVAFFILPLF 270 (390)
T ss_pred -----HHhCchh-h----hHHHHHHHHHHHHHHHhhhHHHHHHHHHHeeeeccCCCCCCcHHHHHHHhhhhHHHHHHHHH
Confidence 2221111 0 11234444455555667999999999999999942 3457888899998 46678998
Q ss_pred -HHHhhcccC---hhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhh----------CCChHHHHHHHHHHhhHHHHHHHH
Q 001810 882 -FMTVGMSID---PKLLLSNFPVITGALGLLIGGKTILVALVGRLF----------GVSVISAIRTGLLLAPGGEFAFVA 947 (1010)
Q Consensus 882 -FVlIGl~Ld---l~~L~~~~~~iilillvvil~K~l~v~l~~~~~----------gl~~real~IGl~LaprG~vaLVL 947 (1010)
|...|.++. ++.+.+ +..+.+.+..+++|.++++..++.. +.+|++-..+++.-+..=++++.+
T Consensus 271 aFaNAGvsl~g~~~~~l~s--~l~lgI~lGL~~GKplGIf~fs~lAvkl~lA~lP~g~~~~qi~~v~iLcGIGFTMSlFI 348 (390)
T COG3004 271 AFANAGVSLQGVSLSGLTS--PLTLGIILGLFLGKPLGIFLFSWLAVKLKLAKLPEGISWKQIYGVSILCGIGFTMSLFI 348 (390)
T ss_pred HHccCCccccccccccccc--chHHHHHHHHHhcCcchhhhhHHHHHHhhhccCCCCCCHHHHHHHHHHHhhhHHHHHHH
Confidence 999998886 334433 4456777888999999999888764 567888777777655555678888
Q ss_pred HHHHHhCC-CCChhh--HHHHHHHHHHHHHHHHHHHHhh
Q 001810 948 FGEAVNQV-CFQPHT--VFLIPNGISIYLQLIMIFFFFN 983 (1010)
Q Consensus 948 a~iAls~G-iIs~~~--lVvlvVVlS~IItPiL~~l~~~ 983 (1010)
+.+++... ...... -++....+|.+++-...+...+
T Consensus 349 ~~LAf~~~~~~~~~~klgIL~gS~~Sai~G~~~L~~~~~ 387 (390)
T COG3004 349 ASLAFGSEDELQTAAKLGILVGSFISAILGYSYLRLLLP 387 (390)
T ss_pred HHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 88887653 222222 4666777777777777776544
No 27
>PF06965 Na_H_antiport_1: Na+/H+ antiporter 1; InterPro: IPR004670 NhaA is a sodium ion/proton antiporter that uses the proton electrochemical gradient to expel sodium ions from the cytoplasm and functions primarily in the adaptation to high salinity at alkaline pH. NhaA is also believed to be responsible for adaptation to alkaline pH when sodium is available. NhaA is one of the three known sodium ion/proton antiporters in Escherichia coli along with NhaB and ChaA, though there are other mechanisms for Na+ extrusion such as NDH-I complicating the determination of the precise roles of each of the transporters [].; GO: 0006814 sodium ion transport, 0006885 regulation of pH, 0016021 integral to membrane; PDB: 3FI1_A 1ZCD_A.
Probab=99.07 E-value=9.3e-10 Score=124.80 Aligned_cols=271 Identities=21% Similarity=0.248 Sum_probs=154.6
Q ss_pred hhHHHHHHHHHHHHHHHHhhcCChhHHH---hchhh---HHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHhhhcccC
Q 001810 651 HGTKAIAEFGVVFLLFNIGLELSVERLS---SMKKY---VFGLGSAQVLVTAVVVGLVAHFVSGLPGPASIVIGNGLALS 724 (1010)
Q Consensus 651 ~~le~LaeLGLi~LLF~aGLEidl~~Lr---r~~k~---il~LAlv~vllt~~~Vg~la~~l~Gls~~~ALLLGaILSaT 724 (1010)
+..+.+.+..+.+++|.+|+|+..+.+. +++|+ .+.-++.+++++. ++|..++...+.+.-=-.+-++|
T Consensus 54 ~l~~wiNDgLMaiFFf~vGLEiKrE~~~GeL~~~r~a~lP~~AAlGGm~vPa-----lIyl~~n~~~~~~~~GW~IP~AT 128 (378)
T PF06965_consen 54 SLHHWINDGLMAIFFFVVGLEIKRELLVGELSSPRKAALPIIAALGGMLVPA-----LIYLAFNAGGPEAAHGWAIPMAT 128 (378)
T ss_dssp EHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTSSTTTSHHHHHHHHHHTTTTH-----HHHGGG--SSTTHHHHTSSSS--
T ss_pred CHHHHHHHhHHHHHHHHHHHHHHHHHhCCCCCChhhhhhHHHHHHhcchHHH-----HHHheeecCCCCcCceEEecccc
Confidence 4456777778888999999999988664 23332 2334455555543 23444444333112222355679
Q ss_pred cHHHHHHHHHHcCC-CCChhhHHHHHHHHhHHHHHHHHHHHHHhhcCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001810 725 STAVVLQVLQERGE-STSRHGRATFSVLLFQDLAVVVLLILIPLISPNSSKGGVGFQAIAEALGVAAVKAAVAITAIIAG 803 (1010)
Q Consensus 725 SpAVvv~IL~elg~-l~s~vGrLlL~~SllnDi~aIVLfali~~ls~~~s~g~isl~~I~~~Lg~~ll~vilgiii~llv 803 (1010)
|.+.++.++.=.|. .|......+++.+++||+.++++.+++ ++ .++++.. +.. .++.+. .+
T Consensus 129 DIAFAlgvlal~G~rvP~~lrvFLlaLAIvDDlgaIlVIA~F---Yt----~~i~~~~----L~~----a~~~~~-~l-- 190 (378)
T PF06965_consen 129 DIAFALGVLALLGKRVPASLRVFLLALAIVDDLGAILVIALF---YT----DGISLLW----LLL----AAAALL-LL-- 190 (378)
T ss_dssp -HHHHHHHHHSS-SSS-SSSHHHHHHHHHHHHHHHHHHHHHH---S---------HHH----HHH----HHHHHH-HH--
T ss_pred cHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhhhhHhheeee---eC----CCCCHHH----HHH----HHHHHH-HH--
Confidence 99999999975543 556677888999999999999887764 21 1222221 110 011111 11
Q ss_pred HHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHcCCCchh---------HHHHHHHHhHH
Q 001810 804 GRLLLRPIYKQIAENQNAEIFSANTLLVILGTSLLTARAGLSMALGAFLAGLLLAETEFS---------LQVESDIAPYR 874 (1010)
Q Consensus 804 g~~llr~llr~i~~~~~~ei~l~ltLll~f~~~llAe~lGlSgvLGAFiAGLiLs~~~~~---------~~L~e~l~~i~ 874 (1010)
+++ ++.. ..+...| +++.+..++....-|+|+.++.++.|+++|..+.. +++++.++|..
T Consensus 191 --~~l----~r~~-v~~~~~Y----~~~G~~lW~~~l~SGvHaTiAGV~~al~iP~~~~~~~~~~~~pl~rle~~L~p~v 259 (378)
T PF06965_consen 191 --FVL----NRLG-VRSLWPY----LLLGILLWYAVLKSGVHATIAGVLLALFIPARPRAGEREAESPLERLEHALHPWV 259 (378)
T ss_dssp --HHH----HHTT----THHH----HHHHHHHHHHTTTSHHHHHHHHHHHHHHS---GGGS----S-HHHHHHHHHHHHH
T ss_pred --HHH----HHCC-CceehHH----HHHHHHHHHHHHHcCCCHHHHHHHHheeeeccCCCCcccCCCHHHHHHHHhhhhh
Confidence 111 1111 0111122 33345566666778999999999999999975322 47788888884
Q ss_pred -HHHHHHH-HHHhhcccChhhhhh-hhhhHHHHHHHHHHHHHHHHHHHHHhh----------CCChHHHHHHHHHHhhHH
Q 001810 875 -GLLLGLF-FMTVGMSIDPKLLLS-NFPVITGALGLLIGGKTILVALVGRLF----------GVSVISAIRTGLLLAPGG 941 (1010)
Q Consensus 875 -~~f~PLF-FVlIGl~Ldl~~L~~-~~~~iilillvvil~K~l~v~l~~~~~----------gl~~real~IGl~LaprG 941 (1010)
.+.+|+| |...|..++-..+.. ..+..+.+++.++++|.++++..++.. +++|++-..+|+.-+..=
T Consensus 260 ~~~IlPlFAlaNAGV~l~~~~~~~~~~pv~lGI~~GLvvGK~lGI~~~~~la~kl~~~~lP~~~~w~~l~gv~~LaGIGF 339 (378)
T PF06965_consen 260 AFVILPLFALANAGVSLSGSSLGDLTSPVTLGIILGLVVGKPLGIFLFSWLAVKLGLARLPDGVSWRHLYGVGLLAGIGF 339 (378)
T ss_dssp HHTHHHHHHHHHS----SSS---THHHHSSTTTTHHHHHTTGGGSTTTTTTTSS-TTT----S--GGGGTTHHHHTT--H
T ss_pred hhhhHHhHhheeCceEEecCchHhhhChHHHHHHHHHHcccchhhhhHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHH
Confidence 5669999 999999887654322 124445666788899999988877653 456777666776555555
Q ss_pred HHHHHHHHHHHhCC
Q 001810 942 EFAFVAFGEAVNQV 955 (1010)
Q Consensus 942 ~vaLVLa~iAls~G 955 (1010)
++++.++.++++..
T Consensus 340 TmSLFIa~LAF~~~ 353 (378)
T PF06965_consen 340 TMSLFIAGLAFDDP 353 (378)
T ss_dssp HHHHHHHHHHSTT-
T ss_pred HHHHHHHHHHcCCh
Confidence 67888888888873
No 28
>PRK12460 2-keto-3-deoxygluconate permease; Provisional
Probab=98.35 E-value=9.4e-05 Score=82.80 Aligned_cols=286 Identities=18% Similarity=0.143 Sum_probs=154.2
Q ss_pred CCch--HHHHHHHHHhhcccccccccCchhHHHHH----HHHHHHHHHHHhhcCChhHHHhchhhHHHHHHHHHHHHHHH
Q 001810 625 GGSP--VLGYLAAGILIGPYGLSIIRHVHGTKAIA----EFGVVFLLFNIGLELSVERLSSMKKYVFGLGSAQVLVTAVV 698 (1010)
Q Consensus 625 gLP~--vVG~ILaGILLGP~gLglI~~~~~le~La----eLGLi~LLF~aGLEidl~~Lrr~~k~il~LAlv~vllt~~~ 698 (1010)
|+|. .+..++.|.++.-+.++...-....+-+. .--+.+++|-.|-.+|++...+..++...+.+.=+++ .++
T Consensus 9 kiPgg~m~vPl~lga~inTf~P~~l~iG~fT~alf~~g~~~il~~~~~~~Ga~I~~k~~~~~l~kg~~l~~~K~~~-~~~ 87 (312)
T PRK12460 9 KIPGGMMVVPLLIGALINTFFPQALEIGGFTTALFKTGAAPLLGAFLLCMGAQISLKAAPQALLKGGVLTITKLGV-AIV 87 (312)
T ss_pred cCCCceeHHHHHHHHHHHhccCcchhhCcccHHHHhcChHHHHHHHHHHhcCeeeccccchhhhhhhhhhhHHHHH-HHH
Confidence 4453 46667888888855555433222222222 1234567899999999998766555544443333333 345
Q ss_pred HHHHHHHhcCCC---hHHHHHHhhhcccCcHHHHHHHHHHcCCCCChhhHHHHHHHHhHHHHHHHHHHHHHhhcCCCCCC
Q 001810 699 VGLVAHFVSGLP---GPASIVIGNGLALSSTAVVLQVLQERGESTSRHGRATFSVLLFQDLAVVVLLILIPLISPNSSKG 775 (1010)
Q Consensus 699 Vg~la~~l~Gls---~~~ALLLGaILSaTSpAVvv~IL~elg~l~s~vGrLlL~~SllnDi~aIVLfali~~ls~~~s~g 775 (1010)
+++++..++|.+ ....+.+=+.++.+..+.=..+..+.|- + .|..+..++++. .|
T Consensus 88 ~g~~~~~~~g~~g~~Gls~laiiaa~~~~Ng~ly~al~~~yG~-~-------------~d~gA~~~~sl~--------~G 145 (312)
T PRK12460 88 IGLLVGKFFGAEGIFGLSGLAIVAAMSNSNGGLYAALMGEFGD-E-------------RDVGAISILSLN--------DG 145 (312)
T ss_pred HHHHHHHHcCcccccchHHHHHHHHHhcCcHHHHHHHHHHcCC-H-------------hhhhHHhhhhhc--------cC
Confidence 666665555532 2333333344444555555556666552 1 122222222210 00
Q ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHH--hchhHHHHHHHH
Q 001810 776 GVGFQAIAEALGVAAVKAAVAITAIIAGGRLLLRPIYKQIAENQNAEIFSANTLLVILGTSLLTAR--AGLSMALGAFLA 853 (1010)
Q Consensus 776 ~isl~~I~~~Lg~~ll~vilgiii~llvg~~llr~llr~i~~~~~~ei~l~ltLll~f~~~llAe~--lGlSgvLGAFiA 853 (1010)
++. -++.++.+.+++. ..+-+.+=+++.
T Consensus 146 --Pf~------------------------------------------------tm~aLga~gLA~ip~~~lv~lilpILi 175 (312)
T PRK12460 146 --PFF------------------------------------------------TMLALGAAGLANIPIMALVAALLPLVL 175 (312)
T ss_pred --cHH------------------------------------------------HHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 110 0111111111111 111224456778
Q ss_pred HHHcCCCchhHHHHHHHHhHHHHHHHHHHHHhhcccChhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHH
Q 001810 854 GLLLAETEFSLQVESDIAPYRGLLLGLFFMTVGMSIDPKLLLSNFPVITGALGLLIGGKTILVALVGRLFGVSVISAIRT 933 (1010)
Q Consensus 854 GLiLs~~~~~~~L~e~l~~i~~~f~PLFFVlIGl~Ldl~~L~~~~~~iilillvvil~K~l~v~l~~~~~gl~~real~I 933 (1010)
|++++|.. +.+.+.+++-..+.+|++-+.+|++++++.+....+..+++.++.++.-+...|+..+++|.+.+..+.+
T Consensus 176 GmilGNld--~~~~~~l~~Gi~f~I~f~~f~LG~~lnl~~I~~~G~~GIlL~v~vv~~t~~~~~~i~rllg~~~~~g~li 253 (312)
T PRK12460 176 GMILGNLD--PDMRKFLTKGGPLLIPFFAFALGAGINLSMLLQAGLAGILLGVLVTIVTGFFNIFADRLVGGTGIAGAAA 253 (312)
T ss_pred HHHHhccc--hhhHHHHhccceEeHHHHHHHhcCCeeHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHH
Confidence 88888843 2344555555566899999999999999998765444444444444555555566668889888888887
Q ss_pred H--HHHhhHHHHHHHHHHHHHhCCCCChhh-HHHHHHHHHHHHHHHHHHHHhhccc
Q 001810 934 G--LLLAPGGEFAFVAFGEAVNQVCFQPHT-VFLIPNGISIYLQLIMIFFFFNCGL 986 (1010)
Q Consensus 934 G--l~LaprG~vaLVLa~iAls~GiIs~~~-lVvlvVVlS~IItPiL~~l~~~~~r 986 (1010)
| .+-+.-|..++.-+.-.+. ...+... .+...|++|.+++|++..|+.++.+
T Consensus 254 ~stAGnAIcgpAAVaAadP~~~-~~~~~Ataqvaa~vivTail~P~~t~~~~k~~~ 308 (312)
T PRK12460 254 SSTAGNAVATPLAIAAADPSLA-PVAAAATAQVAASVIVTAILTPLLTSWVAKKEA 308 (312)
T ss_pred HHHhhHHHHHHHHHHHhchhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 7 5444444333332211111 1111111 4667889999999999999766543
No 29
>PF05684 DUF819: Protein of unknown function (DUF819); InterPro: IPR008537 This family contains proteins of unknown function from archaeal, bacterial and plant species.
Probab=97.96 E-value=0.017 Score=67.12 Aligned_cols=82 Identities=22% Similarity=0.305 Sum_probs=60.2
Q ss_pred HHHHHHcCCCchhHHHHHHHHhHHHHHHHHHHHHhhcccChhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhCCChHHH
Q 001810 851 FLAGLLLAETEFSLQVESDIAPYRGLLLGLFFMTVGMSIDPKLLLSNFPVITGALGLLIGGKTILVALVGRLFGVSVISA 930 (1010)
Q Consensus 851 FiAGLiLs~~~~~~~L~e~l~~i~~~f~PLFFVlIGl~Ldl~~L~~~~~~iilillvvil~K~l~v~l~~~~~gl~~rea 930 (1010)
...|+.....+..+.+ .--+.+..+++-+||..+|+..|+..+.. .+..+++.++.+.+-.+..++.+++++++..+-
T Consensus 247 tt~~l~~~~~~~~~~l-~g~~~lg~~lly~ffa~IGa~a~i~~l~~-ap~~~l~~~i~l~iH~~l~l~~~kl~k~~l~~~ 324 (378)
T PF05684_consen 247 TTLGLATSFPPFRKLL-RGASELGTFLLYLFFAVIGASADISELLD-APSLFLFGFIILAIHLLLMLILGKLFKIDLFEL 324 (378)
T ss_pred HHHHHHHhccchhhcC-CchHHHHHHHHHHHHHHHccccCHHHHHH-hHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 3444444444444433 44456678899999999999999998887 555666667778888899999999999998776
Q ss_pred HHHH
Q 001810 931 IRTG 934 (1010)
Q Consensus 931 l~IG 934 (1010)
..-+
T Consensus 325 ~vAS 328 (378)
T PF05684_consen 325 LVAS 328 (378)
T ss_pred HHHh
Confidence 5444
No 30
>PF03812 KdgT: 2-keto-3-deoxygluconate permease; InterPro: IPR004684 This family includes the characterised 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both Gram-positive and Gram-negative bacteria. In E. chrysanthemi, a phytopathogenic bacterium, degraded pectin products from plant cell walls are transported by 2-keto-3-deoxygluconate permease into the bacterial cell to provide a carbon and energy source []. 2-keto-3-deoxygluconate permease can mediate the uptake of glucuronate with a low affinity [].; GO: 0015649 2-keto-3-deoxygluconate:hydrogen symporter activity, 0008643 carbohydrate transport, 0046411 2-keto-3-deoxygluconate transport, 0016021 integral to membrane
Probab=97.79 E-value=0.0068 Score=68.06 Aligned_cols=114 Identities=18% Similarity=0.166 Sum_probs=71.2
Q ss_pred cCCCch--HHHHHHHHHhhccccccccc-CchhHHHHH---HHHHHHHHHHHhhcCChhHHHhchhhHHHHHHHHHHHHH
Q 001810 623 IPGGSP--VLGYLAAGILIGPYGLSIIR-HVHGTKAIA---EFGVVFLLFNIGLELSVERLSSMKKYVFGLGSAQVLVTA 696 (1010)
Q Consensus 623 l~gLP~--vVG~ILaGILLGP~gLglI~-~~~~le~La---eLGLi~LLF~aGLEidl~~Lrr~~k~il~LAlv~vllt~ 696 (1010)
+.|+|. .+..++.|.++.-+.++... -....+-+. ..-+.+++|-.|.++|++...+..|+...+.+.=+++ .
T Consensus 7 i~kiPGG~mvVPLllgalinTf~P~~l~~iG~fT~al~~G~~~iig~~l~~~Ga~I~~k~~~~~lkkg~~ll~~K~~~-~ 85 (314)
T PF03812_consen 7 IEKIPGGMMVVPLLLGALINTFFPNALEIIGGFTTALFTGANPIIGVFLFCMGAQIDLKSAGKVLKKGGVLLLVKFII-G 85 (314)
T ss_pred hccCCCceeHHHHHHHHHHHhcCCChhhccCcHHHHHHcchHHHHHHHHHHhccccchhhhhHHHHhhhHHHHHHHHH-H
Confidence 335553 57778888888855555533 112222121 2234568899999999999887777766665555544 3
Q ss_pred HHHHHHHHHhcCCC--------hHHHHHHhhhcccCcHHHHHHHHHHcC
Q 001810 697 VVVGLVAHFVSGLP--------GPASIVIGNGLALSSTAVVLQVLQERG 737 (1010)
Q Consensus 697 ~~Vg~la~~l~Gls--------~~~ALLLGaILSaTSpAVvv~IL~elg 737 (1010)
++++++...++|.. ...++.+-+.++.+..++-..+..+.|
T Consensus 86 ~~lgl~~~~~fg~~Gi~~g~f~GlS~LAiiaa~~~~NggLY~aL~~~yG 134 (314)
T PF03812_consen 86 ALLGLLVGKFFGPEGIQSGFFLGLSALAIIAAMTNSNGGLYLALMGQYG 134 (314)
T ss_pred HHHHHHHHHHcCccccccccccchHHHHHHHHHhcCCHHHHHHHHHHhC
Confidence 56777776666543 234445555666677777777777777
No 31
>PF03616 Glt_symporter: Sodium/glutamate symporter; InterPro: IPR004445 This is a family of sodium/glutamate symporters (glutamate permeases), which catalyse the sodium-dependent uptake of extracellular glutamate. The protein is located in the inner membrane.; GO: 0015501 glutamate:sodium symporter activity, 0015813 L-glutamate transport, 0016021 integral to membrane
Probab=97.62 E-value=0.031 Score=64.78 Aligned_cols=93 Identities=17% Similarity=0.098 Sum_probs=56.4
Q ss_pred hchhHHHHHHHHHHHcCCC----chhHHHHHHHHhHHHHHHHHHHHHhhcccChhhhhhhhhhHHH-HHHHHHHHHHHHH
Q 001810 842 AGLSMALGAFLAGLLLAET----EFSLQVESDIAPYRGLLLGLFFMTVGMSIDPKLLLSNFPVITG-ALGLLIGGKTILV 916 (1010)
Q Consensus 842 lGlSgvLGAFiAGLiLs~~----~~~~~L~e~l~~i~~~f~PLFFVlIGl~Ldl~~L~~~~~~iil-illvvil~K~l~v 916 (1010)
+.++..+++++.|+++++. +..+--.+.++.+.++.+-+|-+..=|++++..+.+.+..+++ +++..++.=+...
T Consensus 245 ~~lP~f~~ami~g~ivrn~~~~~~~~~id~~~i~~I~~~sL~~fl~~almsl~l~~l~~~a~Plliil~~q~i~~~~f~~ 324 (368)
T PF03616_consen 245 LTLPLFVGAMIVGIIVRNILDKTGKYKIDRKTIDRISGISLDLFLAMALMSLKLWVLADYALPLLIILAVQTILMVLFAY 324 (368)
T ss_pred cCCchHHHHHHHHHHHHHHHHHhCcccCCHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4557889999999999873 1112112234455666666665666677888888776544433 3333344444556
Q ss_pred HHHHHhhCCChHHHHHHHH
Q 001810 917 ALVGRLFGVSVISAIRTGL 935 (1010)
Q Consensus 917 ~l~~~~~gl~~real~IGl 935 (1010)
|+..+..|-++ |+..++.
T Consensus 325 fv~fr~~gkdy-daavm~~ 342 (368)
T PF03616_consen 325 FVTFRVMGKDY-DAAVMSA 342 (368)
T ss_pred HHhhhhhCCCh-hHHHHhh
Confidence 66777888776 4444433
No 32
>TIGR00210 gltS sodium--glutamate symport carrier (gltS).
Probab=97.61 E-value=0.03 Score=65.49 Aligned_cols=91 Identities=19% Similarity=0.124 Sum_probs=60.5
Q ss_pred hchhHHHHHHHHHHHcCCC----chhHHHHHHHHhHHHHHHHHHHHHhhcccChhhhhhhhhhHHHHHHHHHHHH-HHHH
Q 001810 842 AGLSMALGAFLAGLLLAET----EFSLQVESDIAPYRGLLLGLFFMTVGMSIDPKLLLSNFPVITGALGLLIGGK-TILV 916 (1010)
Q Consensus 842 lGlSgvLGAFiAGLiLs~~----~~~~~L~e~l~~i~~~f~PLFFVlIGl~Ldl~~L~~~~~~iilillvvil~K-~l~v 916 (1010)
+.++...++++.|+++++. +..+...+.++.+.++..-+|-+..=|++++..+.+.+..+++++++-++.- +...
T Consensus 243 ~~lP~fv~am~~giiirni~~~~~~~~~~~~~i~~I~~~sLdlfl~~AlmsL~L~~l~~~a~Plliil~~q~i~~~l~~~ 322 (398)
T TIGR00210 243 LMLPTFVWCLFVGVILRNPLSFKKFPWVAERAVSVIGNVSLSLFLAIALMSLQLWELADLAGPIALILLVQVMFMALYAI 322 (398)
T ss_pred CCCCchHHHHHHHHHHHHHHHHhCccccchHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4478999999999999973 2222333466667788888888888888999988887655544444433333 3445
Q ss_pred HHHHHhhCCChHHHHHH
Q 001810 917 ALVGRLFGVSVISAIRT 933 (1010)
Q Consensus 917 ~l~~~~~gl~~real~I 933 (1010)
|+..+..+-+ .|+..+
T Consensus 323 fv~fr~mg~~-ydaaV~ 338 (398)
T TIGR00210 323 FVTFRLMGKD-YDAAVL 338 (398)
T ss_pred HHhHHhccch-HHHHHH
Confidence 6666666665 566553
No 33
>TIGR00698 conserved hypothetical integral membrane protein. Members of this family are found so far only in one archaeal species, Archaeoglobus fulgidus, and in two related bacterial species, Haemophilus influenzae and Escherichia coli. It has 9 GES predicted transmembrane regions at conserved locations in all members. These proteins have a molecular weight of approximately 35 to 38 kDa.
Probab=97.54 E-value=0.11 Score=59.53 Aligned_cols=104 Identities=15% Similarity=0.193 Sum_probs=68.3
Q ss_pred CCCchHHHHHHHHHhhccccc-ccccC-chhH----HHHHHHHHHHHHHHHhhcCChhHHHhchhhHHHHHHHHHHHHHH
Q 001810 624 PGGSPVLGYLAAGILIGPYGL-SIIRH-VHGT----KAIAEFGVVFLLFNIGLELSVERLSSMKKYVFGLGSAQVLVTAV 697 (1010)
Q Consensus 624 ~gLP~vVG~ILaGILLGP~gL-glI~~-~~~l----e~LaeLGLi~LLF~aGLEidl~~Lrr~~k~il~LAlv~vllt~~ 697 (1010)
+++++++.-++.|+++|+... +..+. ..-+ +.+..+|+++ .|.++++.++...+...+.+.+..+..+.+
T Consensus 29 ~~l~~~~~AillG~~l~n~~~~~~~~~~~~Gi~f~~k~lLr~gIVL----lG~~l~~~~i~~~G~~~l~~~~~~v~~~~~ 104 (335)
T TIGR00698 29 PALSALFLAILLGMVAGNTIYPQRDEEKKRGVLFAKPFLLRIGITL----YGFRLTFPYIADVGPNEIVADTLILTSTFF 104 (335)
T ss_pred CCCcHHHHHHHHHHHHhccccccchhhccchHHHHHHHHHHHHHHH----HCccccHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 378999999999999998532 11111 1112 4566666665 588999999999988877766665555433
Q ss_pred HHHHHHHHhcCCChHHHHHHhhhcccCcHHHHHH
Q 001810 698 VVGLVAHFVSGLPGPASIVIGNGLALSSTAVVLQ 731 (1010)
Q Consensus 698 ~Vg~la~~l~Gls~~~ALLLGaILSaTSpAVvv~ 731 (1010)
...++...+++++...+.++|+..+..-...+..
T Consensus 105 ~~~~~g~k~l~l~~~~~~Lia~GtsICGaSAi~A 138 (335)
T TIGR00698 105 LTVFLGSSRLKLDKQMSILLGAGSSICGAAAVAA 138 (335)
T ss_pred HHHHHHHHHhCCChhHHHHHHcchhHHHHHHHHH
Confidence 3333333578999999998887666544443333
No 34
>PF03601 Cons_hypoth698: Conserved hypothetical protein 698; InterPro: IPR018383 This entry represents a family of uncharacterised multi-pass membrane proteins.; GO: 0016021 integral to membrane
Probab=97.54 E-value=0.03 Score=63.38 Aligned_cols=110 Identities=18% Similarity=0.260 Sum_probs=75.4
Q ss_pred cCCCchHHHHHHHHHhhcccccccccC----chh-HHHHHHHHHHHHHHHHhhcCChhHHHhchhhHHHHHHHHHHHHHH
Q 001810 623 IPGGSPVLGYLAAGILIGPYGLSIIRH----VHG-TKAIAEFGVVFLLFNIGLELSVERLSSMKKYVFGLGSAQVLVTAV 697 (1010)
Q Consensus 623 l~gLP~vVG~ILaGILLGP~gLglI~~----~~~-le~LaeLGLi~LLF~aGLEidl~~Lrr~~k~il~LAlv~vllt~~ 697 (1010)
.+.+++++.-++.|+++++..++.-+. ... .+.+..+|+++ .|.++++.++.+.+...+.+.++.++++.
T Consensus 23 ~~~l~~~~~AillG~~i~n~~~~~~~~~~~Gi~~~~k~~Lr~gIVL----lG~~l~~~~i~~~G~~~~~~~~~~v~~~~- 97 (305)
T PF03601_consen 23 LPGLGALLIAILLGMLIGNLFFGLPARFKPGIKFSSKKLLRLGIVL----LGFRLSFSDILALGWKGLLIIIIVVILTF- 97 (305)
T ss_pred ccCccHHHHHHHHHHHHhhhccCCcHHHHhHHHHHHHHHHHHHHHH----HCccccHHHHHHhCccHHHHHHHHHHHHH-
Confidence 347889999999999999733333221 111 24566666665 58899999999998877777777666654
Q ss_pred HHHHHHH-HhcCCChHHHHHHhhhcccCcHHHHHHHHHHcC
Q 001810 698 VVGLVAH-FVSGLPGPASIVIGNGLALSSTAVVLQVLQERG 737 (1010)
Q Consensus 698 ~Vg~la~-~l~Gls~~~ALLLGaILSaTSpAVvv~IL~elg 737 (1010)
.+++.+. .+++++...+.++|+..+..-...+..+-.-.+
T Consensus 98 ~~~~~lg~r~~~l~~~~~~Lia~GtsICG~SAi~A~a~~i~ 138 (305)
T PF03601_consen 98 LLTYWLGRRLFGLDRKLAILIAAGTSICGASAIAATAPVIK 138 (305)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHhhcccchHHHHHHHccccc
Confidence 4445444 788999999999998877766555444443333
No 35
>COG3180 AbrB Putative ammonia monooxygenase [General function prediction only]
Probab=97.52 E-value=0.31 Score=56.07 Aligned_cols=133 Identities=23% Similarity=0.285 Sum_probs=83.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCch--HHH-HHHHHHhhcccccccccCchhHHHHHHHHHHHHHHHHhhcCChhHH
Q 001810 601 ASLFDVLWLLLASVIFVPIFQKIPGGSP--VLG-YLAAGILIGPYGLSIIRHVHGTKAIAEFGVVFLLFNIGLELSVERL 677 (1010)
Q Consensus 601 ~~Ll~illLLl~A~ilg~Ll~Rl~gLP~--vVG-~ILaGILLGP~gLglI~~~~~le~LaeLGLi~LLF~aGLEidl~~L 677 (1010)
....+.+++++++.+.++++..+ ++|. .+| .+++|++.+-.+..+ .....+..++...+--.+|..+..+.+
T Consensus 6 ~~~~~w~i~l~ls~~~g~l~~~~-~vPa~~mlG~~l~a~~v~~~~~~~l----~~P~~l~~~~q~ilG~~ig~~~t~s~l 80 (352)
T COG3180 6 PIILQWFILLLLSLLGGWLLTLL-HVPAAWMLGAPLLAGIVAGLRGLTL----PLPRGLFKAGQVILGIMIGASLTPSVL 80 (352)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHhccccc----cCChHHHHHHHHHHHHHHhhhcCHHHH
Confidence 34677888899999999999999 8875 467 788888888432222 222567778888888899999988766
Q ss_pred H---hchhhHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHhhhcccCcHHHHHHHHHHcCCCCChh
Q 001810 678 S---SMKKYVFGLGSAQVLVTAVVVGLVAHFVSGLPGPASIVIGNGLALSSTAVVLQVLQERGESTSRH 743 (1010)
Q Consensus 678 r---r~~k~il~LAlv~vllt~~~Vg~la~~l~Gls~~~ALLLGaILSaTSpAVvv~IL~elg~l~s~v 743 (1010)
. ++|...+.+.+..+. ..+.+|++...+.+++...+++- .+|-....+..+-+|.|. +.+.
T Consensus 81 ~~l~~~w~~~~~v~~~tl~-~s~l~g~ll~r~~~~~~~Ta~~g---s~PGgas~m~~iA~d~gA-d~~~ 144 (352)
T COG3180 81 DTLKSNWPIVLVVLLLTLL-SSILLGWLLKRFSILPGNTAFLG---SSPGGASAMVSIAQDYGA-DLRL 144 (352)
T ss_pred HHHHHcccHHHHHHHHHHH-HHHHHHHHHHHhcCCCcchhhHh---cCCchHHHHHHHHHHhCC-ChhH
Confidence 4 445444444433333 23455665555555666666542 222222344444467663 4433
No 36
>PF05145 AmoA: Putative ammonia monooxygenase; InterPro: IPR007820 This family contains sequences annotated as ammonia monooxygenase. The AmoA gene product from Pseudomonas putida has been characterised as ammonia monooxygenase []. Ammonia monooxygenase catalyses the oxidation of NH(3) to NH(2)OH.
Probab=97.47 E-value=0.12 Score=58.93 Aligned_cols=149 Identities=18% Similarity=0.174 Sum_probs=85.6
Q ss_pred HHHHHHHHHHHHHHhch--hHHHHHHHHHHHcCCCc-hhHHHHHHHHhHHHHHHHHHHHHhhcccChhhhhh---hhhhH
Q 001810 828 TLLVILGTSLLTARAGL--SMALGAFLAGLLLAETE-FSLQVESDIAPYRGLLLGLFFMTVGMSIDPKLLLS---NFPVI 901 (1010)
Q Consensus 828 tLll~f~~~llAe~lGl--SgvLGAFiAGLiLs~~~-~~~~L~e~l~~i~~~f~PLFFVlIGl~Ldl~~L~~---~~~~i 901 (1010)
.+.++++.++++..+++ ..++|+++.+.++.... ....+... +..+-.-+.=..+|.+++...+.. .++..
T Consensus 160 l~~~~~~g~~l~~~l~iPa~~llGpml~~a~~~~~~~~~~~~P~~---l~~~aqv~iG~~iG~~f~~~~l~~~~~~~~~~ 236 (318)
T PF05145_consen 160 LALAALAGGLLARRLRIPAPWLLGPMLVSAILNLFGGPSFSLPPW---LVNAAQVLIGASIGSRFTRETLRELRRLLPPA 236 (318)
T ss_pred HHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhCCCCCCCHH---HHHHHHHHHHHHHHccccHHHHHHHHHHHHHH
Confidence 34445555666666665 46677777666665321 11111111 122223334456788888666543 34455
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHhhHHHHHHHHHHHHHhCCCCChhh-HH--HHHHHHHHHHHHHHH
Q 001810 902 TGALGLLIGGKTILVALVGRLFGVSVISAIRTGLLLAPGGEFAFVAFGEAVNQVCFQPHT-VF--LIPNGISIYLQLIMI 978 (1010)
Q Consensus 902 ilillvvil~K~l~v~l~~~~~gl~~real~IGl~LaprG~vaLVLa~iAls~GiIs~~~-lV--vlvVVlS~IItPiL~ 978 (1010)
++.+++.+..-.+..++..+++++++.+.+ ++ ++|.|.-++.+....++. +... .. +.=+++-.++.|++.
T Consensus 237 l~~~~~~l~~~~~~a~~l~~~~~~~~~t~~-La--~aPGGl~eM~l~A~~l~~---d~~~V~~~q~~Rl~~v~~~~p~~~ 310 (318)
T PF05145_consen 237 LLSTLLLLALCALFAWLLSRLTGIDFLTAL-LA--TAPGGLAEMALIALALGA---DVAFVAAHQVVRLLFVLLLAPFIA 310 (318)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCHHHHH-HH--hCCccHHHHHHHHHHcCC---ChHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666667777788888899999987764 33 589998888776555443 3232 11 111222234678888
Q ss_pred HHHhhcc
Q 001810 979 FFFFNCG 985 (1010)
Q Consensus 979 ~l~~~~~ 985 (1010)
+++.++|
T Consensus 311 r~~~r~~ 317 (318)
T PF05145_consen 311 RWLRRRR 317 (318)
T ss_pred HHHHHhc
Confidence 8876654
No 37
>COG0385 Predicted Na+-dependent transporter [General function prediction only]
Probab=97.47 E-value=0.078 Score=60.22 Aligned_cols=101 Identities=17% Similarity=0.153 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHHHhhcCChhHHHhc---hhhHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHhhhcccCcHHHHHHH
Q 001810 656 IAEFGVVFLLFNIGLELSVERLSSM---KKYVFGLGSAQVLVTAVVVGLVAHFVSGLPGPASIVIGNGLALSSTAVVLQV 732 (1010)
Q Consensus 656 LaeLGLi~LLF~aGLEidl~~Lrr~---~k~il~LAlv~vllt~~~Vg~la~~l~Gls~~~ALLLGaILSaTSpAVvv~I 732 (1010)
...+++.+++|..|+.++.+++++. |+..+...+.++++.+ .+|+...+++.++ ..+..|.++..+.|..+.+.
T Consensus 39 ~~~~~l~lImf~mGl~Ls~~d~~~~~~~p~~vligl~~qfvlmP-lla~~~~~~~~l~--~~l~~Gl~ll~~~Pggv~S~ 115 (319)
T COG0385 39 AIPIALALIMFGMGLTLSREDFLAGLKHPRLVLIGLAAQFVLMP-LLALLLAKLFPLP--PELAVGLLLLGCCPGGVASN 115 (319)
T ss_pred HHHHHHHHHHHhcCCCCCHHHHHHhhcchHHHHHHHHHHHHHHH-HHHHHHHHHcCCC--HHHHHhHHheeeCCCchhHH
Confidence 4478899999999999999999854 4444444444444333 3455555555444 33455555555555433332
Q ss_pred -HHHcCCCCChhhHHHHHHHHhHHHHHHHHH
Q 001810 733 -LQERGESTSRHGRATFSVLLFQDLAVVVLL 762 (1010)
Q Consensus 733 -L~elg~l~s~vGrLlL~~SllnDi~aIVLf 762 (1010)
+..+- +.. --+..+.+.++-+.+.++.
T Consensus 116 ~~t~lA--kGn-ValsV~~tsvStll~~f~t 143 (319)
T COG0385 116 AMTYLA--KGN-VALSVCSTSVSTLLGPFLT 143 (319)
T ss_pred HHHHHh--cCc-HHHHHHHHHHHHHHHHHHH
Confidence 22211 111 1233344556666666555
No 38
>COG2855 Predicted membrane protein [Function unknown]
Probab=97.22 E-value=0.4 Score=54.83 Aligned_cols=127 Identities=17% Similarity=0.233 Sum_probs=79.8
Q ss_pred CCchHHHHHHHHHhhcccccccccCchh----HHHHHHHHHHHHHHHHhhcCChhHHHhchhhHHHHHHHHHHHHHHHHH
Q 001810 625 GGSPVLGYLAAGILIGPYGLSIIRHVHG----TKAIAEFGVVFLLFNIGLELSVERLSSMKKYVFGLGSAQVLVTAVVVG 700 (1010)
Q Consensus 625 gLP~vVG~ILaGILLGP~gLglI~~~~~----le~LaeLGLi~LLF~aGLEidl~~Lrr~~k~il~LAlv~vllt~~~Vg 700 (1010)
++|+++.-|+.||++|...-........ -..+..+|+++ -|+++++.++...+...+.+-...+..+ +.++
T Consensus 36 ~l~al~lAIllGi~l~~l~~~~~~~~~GI~fs~k~LLr~gIvL----lG~~ltl~~i~~~G~~~v~~~~~~l~~t-~~~~ 110 (334)
T COG2855 36 GLSALTLAILLGILLGILPQIPAQTSAGITFSSKKLLRLGIVL----LGFRLTLSDIADVGGSGVLIIAITLSST-FLFA 110 (334)
T ss_pred CchHHHHHHHHHHHHhccccchhhhccchhhhHHHHHHHHHHH----HcceeeHHHHHHcCccHHHHHHHHHHHH-HHHH
Confidence 6889999999999999431111011111 24556666665 5889999999998887776665555544 4566
Q ss_pred HHHHHhcCCChHHHHHHhhhcccCcHHHHHHHHHHcCCCCChhhHHHHHHHHhHHH
Q 001810 701 LVAHFVSGLPGPASIVIGNGLALSSTAVVLQVLQERGESTSRHGRATFSVLLFQDL 756 (1010)
Q Consensus 701 ~la~~l~Gls~~~ALLLGaILSaTSpAVvv~IL~elg~l~s~vGrLlL~~SllnDi 756 (1010)
++...++|+++..+.++|+..|..-.+.++.+=--.+..++++...+....+++-+
T Consensus 111 ~~lg~~lgld~~~a~Lia~GssICGasAiaA~~pvika~~~eva~aIa~V~lfgti 166 (334)
T COG2855 111 YFLGKLLGLDKKLALLIAAGSSICGASAIAATAPVIKAEEEEVAVAIAVVVLFGTL 166 (334)
T ss_pred HHHHHHhCCCHHHHHHHHccchhhHHHHHHHhCCcCCCCccccceehhhHHHHHHH
Confidence 66666899999999999988877655554443333333233333333333444433
No 39
>COG0786 GltS Na+/glutamate symporter [Amino acid transport and metabolism]
Probab=97.21 E-value=0.084 Score=61.11 Aligned_cols=101 Identities=14% Similarity=0.074 Sum_probs=65.0
Q ss_pred HHHHHHHHHHhc-----hhHHHHHHHHHHHcCCC----chhHHHHHHHHhHHHHHHHHHHHHhhcccChhhhhhhhh-hH
Q 001810 832 ILGTSLLTARAG-----LSMALGAFLAGLLLAET----EFSLQVESDIAPYRGLLLGLFFMTVGMSIDPKLLLSNFP-VI 901 (1010)
Q Consensus 832 ~f~~~llAe~lG-----lSgvLGAFiAGLiLs~~----~~~~~L~e~l~~i~~~f~PLFFVlIGl~Ldl~~L~~~~~-~i 901 (1010)
....+++.++++ ++....+++.|+++++. ...+-..+.++.+.++-+.+|-.+.=|++.+..+.+.+. .+
T Consensus 231 ~~vG~~i~~~l~~~~~~lP~fv~~lfvgiIvrni~~~~~~~~v~~~~v~~ig~vsL~lflamALmSlkLweL~~l~lpl~ 310 (404)
T COG0786 231 LAVGKIINQLLKSLGLALPLFVMCLFVGVILRNILDLLKKYRVFRRAVDVIGNVSLSLFLAMALMSLKLWELADLALPLL 310 (404)
T ss_pred HHHHHHHHHHHhhccccccHHHHHHHHHHHHHhHHHHhccccccHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccccHH
Confidence 333444555544 67888999999999984 222234456666777778888777778888887776543 33
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhCCChHHHHH
Q 001810 902 TGALGLLIGGKTILVALVGRLFGVSVISAIR 932 (1010)
Q Consensus 902 ilillvvil~K~l~v~l~~~~~gl~~real~ 932 (1010)
+++.+-.++.-+...|+..+..|-++..+..
T Consensus 311 viL~vQ~i~m~lfa~fvtfr~mG~~YdAaV~ 341 (404)
T COG0786 311 VILAVQTIVMALFAIFVTFRLMGKNYDAAVL 341 (404)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCcchhHHHH
Confidence 3333334444555666677778877766554
No 40
>COG0798 ACR3 Arsenite efflux pump ACR3 and related permeases [Inorganic ion transport and metabolism]
Probab=97.20 E-value=0.22 Score=56.77 Aligned_cols=151 Identities=17% Similarity=0.137 Sum_probs=81.7
Q ss_pred chHHHHHHHHHhhcccccc---ccc--CchhHHHHHHHHHHHHHHHHhhcCChhHHHhchhh---HHHHHHHHHHHHHHH
Q 001810 627 SPVLGYLAAGILIGPYGLS---IIR--HVHGTKAIAEFGVVFLLFNIGLELSVERLSSMKKY---VFGLGSAQVLVTAVV 698 (1010)
Q Consensus 627 P~vVG~ILaGILLGP~gLg---lI~--~~~~le~LaeLGLi~LLF~aGLEidl~~Lrr~~k~---il~LAlv~vllt~~~ 698 (1010)
+-+...+++|+.+|-..++ .+. +...++.-..+++.+.++-.=..+|++.+++..+. ....-+...++.++.
T Consensus 18 ~wv~l~i~~Gi~lG~~~p~~~~~l~~~~~~~~sipiai~L~~MmYP~m~ki~~~~~~~v~k~~k~L~lsL~~Nwii~P~l 97 (342)
T COG0798 18 LWVFLAIAIGILLGVHFPGLAQLLGKLEFGGVSIPIAIGLILMMYPPMLKIDFEELKNVFKDPKPLILSLFVNWIIGPLL 97 (342)
T ss_pred HHHHHHHHHHHHHHhcccchhhhcccceeCceehhHHHHHHHHHhHHHhcCCHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 3466778888888854444 222 12334666778888889988899999999865543 332233334444444
Q ss_pred HHHHHHHhcCCChHHHHHHhhhcccCcHHHHHH-HHHHcCCCCChhhHHHHHHHHhHHHHHHHHHHHHHhhcCCCCCCCc
Q 001810 699 VGLVAHFVSGLPGPASIVIGNGLALSSTAVVLQ-VLQERGESTSRHGRATFSVLLFQDLAVVVLLILIPLISPNSSKGGV 777 (1010)
Q Consensus 699 Vg~la~~l~Gls~~~ALLLGaILSaTSpAVvv~-IL~elg~l~s~vGrLlL~~SllnDi~aIVLfali~~ls~~~s~g~i 777 (1010)
...+++++++.-+ .+..|.++..-.|-.++. +-.++-. .-...++....+||++.+++++....+.-+....++
T Consensus 98 m~~la~~fl~~~p--ey~~GlILlglApC~aMVivw~~La~---Gd~~~tlv~Va~n~l~qiv~y~~~~~~~l~v~~~~v 172 (342)
T COG0798 98 MFALAWFFLPDEP--EYRAGLILLGLAPCIAMVIVWSGLAK---GDRELTLVLVAFNSLLQIVLYAPLGKFFLGVISISV 172 (342)
T ss_pred HHHHHHHHhCCCH--HHHHHHHHHHhhhhHHHHHHHHhhcc---CcHhhhhHHHHHHHHHHHHHHHHHHHHHHhhccccc
Confidence 4444444443322 333444333332322222 2233221 122456667789999999999654444332223345
Q ss_pred cHHHH
Q 001810 778 GFQAI 782 (1010)
Q Consensus 778 sl~~I 782 (1010)
+++.+
T Consensus 173 ~~~~i 177 (342)
T COG0798 173 PFWTI 177 (342)
T ss_pred cHHHH
Confidence 55443
No 41
>TIGR00793 kdgT 2-keto-3-deoxygluconate transporter. This family includes the characterized 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both gram-positive and gram-negative bacteria.
Probab=97.18 E-value=0.039 Score=61.88 Aligned_cols=131 Identities=16% Similarity=0.132 Sum_probs=68.4
Q ss_pred HHHHHHHcCCCchhHHHHHHHHhHHHHHHHHHHHHhhcccChhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhC-CChH
Q 001810 850 AFLAGLLLAETEFSLQVESDIAPYRGLLLGLFFMTVGMSIDPKLLLSNFPVITGALGLLIGGKTILVALVGRLFG-VSVI 928 (1010)
Q Consensus 850 AFiAGLiLs~~~~~~~L~e~l~~i~~~f~PLFFVlIGl~Ldl~~L~~~~~~iilillvvil~K~l~v~l~~~~~g-l~~r 928 (1010)
.++.|++++|.+ +++.+.+.+-...++|+|-..+|..+|++.+...-...+++-+..++.--...|+.-++.+ -+..
T Consensus 177 PlliG~ilGNLD--~~~r~fl~~~~~~lIpFf~FaLGaginl~~i~~aGl~GIlLGl~v~~vtG~~~~~~dr~~~g~~g~ 254 (314)
T TIGR00793 177 PFLVGFALGNLD--PELRDFFSKAVQTLIPFFAFALGNTIDLGVIIQTGLLGILLGVSVIILTGIPLILADKFIGGGDGT 254 (314)
T ss_pred HHHHHHHHhcCC--HHHHHHhccCCCeeeehhhhhhcCCCCHHHHHHhCcchHHHHHHHHHHHhHHHHHHHHHhcCCCCc
Confidence 455677777643 3344455555678899999999999999888654211222212222223334444555442 2222
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhCCCCCh----hh-HHHHHHHHHHHHHHHHHHHHhhcc
Q 001810 929 SAIRTGLLLAPGGEFAFVAFGEAVNQVCFQP----HT-VFLIPNGISIYLQLIMIFFFFNCG 985 (1010)
Q Consensus 929 eal~IGl~LaprG~vaLVLa~iAls~GiIs~----~~-lVvlvVVlS~IItPiL~~l~~~~~ 985 (1010)
-...++ +.-|.-...=+.++.-..-..+ .. .+...|++|.+++|++..|+.++.
T Consensus 255 aG~A~s---stAGnAvatPaavA~adPs~~~~a~~ATaqvAaavivTaiL~Pilta~~~kr~ 313 (314)
T TIGR00793 255 AGIAAS---SSAGAAVATPVLIAEMVPAFKPVAPAATALVATSVIVTSLLVPIATVWWSKKV 313 (314)
T ss_pred hhhHHH---HHHHHhhhhHHHHHHhChhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 222222 1112211111222222211111 11 466788899999999999977653
No 42
>PF13593 DUF4137: SBF-like CPA transporter family (DUF4137)
Probab=97.12 E-value=0.18 Score=57.29 Aligned_cols=105 Identities=16% Similarity=0.201 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHHHHhhcCChhHHHhch---hhHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHhhhcccCcHHHHH
Q 001810 654 KAIAEFGVVFLLFNIGLELSVERLSSMK---KYVFGLGSAQVLVTAVVVGLVAHFVSGLPGPASIVIGNGLALSSTAVVL 730 (1010)
Q Consensus 654 e~LaeLGLi~LLF~aGLEidl~~Lrr~~---k~il~LAlv~vllt~~~Vg~la~~l~Gls~~~ALLLGaILSaTSpAVvv 730 (1010)
+....+++..++|..|+.++.+++++.. |..+..-...+++++ .+++....+++......+..|..+...-|..+.
T Consensus 30 ~~~~~~~v~~iFf~~Gl~L~~~~l~~~~~~~~~~l~~~~~~fvl~P-ll~~~~~~l~~~~~~~~l~~Gl~~~~~lPtTv~ 108 (313)
T PF13593_consen 30 EYVIKYGVALIFFISGLSLPTEELKAALRNWRLHLFVQAFNFVLFP-LLGFGLSRLFPAFLPPELALGLLILACLPTTVS 108 (313)
T ss_pred hhhHHHHHHHHHHHHcCCCCHHHHHHHHhcchHHHHHHHHHHHHHH-HHHHHHHHHhhccCCHHHHHHHHHHhhCCchhh
Confidence 4667788899999999999999998644 332222222222222 234444444322112224444443333332211
Q ss_pred -H-HHHHcCCCCChhhHHHHHHHHhHHHHHHHHH
Q 001810 731 -Q-VLQERGESTSRHGRATFSVLLFQDLAVVVLL 762 (1010)
Q Consensus 731 -~-IL~elg~l~s~vGrLlL~~SllnDi~aIVLf 762 (1010)
. ++...- +.. -...+..+.+..+.++++.
T Consensus 109 S~v~~T~~A--gGN-~a~Al~~~~~snllgv~lt 139 (313)
T PF13593_consen 109 SSVVLTRLA--GGN-VALALFNAVLSNLLGVFLT 139 (313)
T ss_pred HHHHHHHHc--CCC-HHHHHHHHHHHhhhhHhHH
Confidence 1 222222 111 2345556777777777776
No 43
>TIGR00841 bass bile acid transporter. Functionally characterized members of the BASS family catalyze Na+:bile acid symport. These systems have been identified in intestinal, liver and kidney tissues of animals. These symporters exhibit broad specificity, taking up a variety of non bile organic compounds as well as taurocholate and other bile salts. Functionally uncharacterised homologues are found in plants, yeast, archaea and bacteria.
Probab=97.05 E-value=0.25 Score=55.36 Aligned_cols=98 Identities=15% Similarity=0.176 Sum_probs=50.8
Q ss_pred HHHHHHHHHHhhcCChhHHHhchhh--HHHHHH-HHHHHHHHHHHHHHHHhcCCChHHHHHHhhhcccCcH-HHHHHHHH
Q 001810 659 FGVVFLLFNIGLELSVERLSSMKKY--VFGLGS-AQVLVTAVVVGLVAHFVSGLPGPASIVIGNGLALSST-AVVLQVLQ 734 (1010)
Q Consensus 659 LGLi~LLF~aGLEidl~~Lrr~~k~--il~LAl-v~vllt~~~Vg~la~~l~Gls~~~ALLLGaILSaTSp-AVvv~IL~ 734 (1010)
..+.++||..|+.++++++++..++ ....++ ..+++.++ +++....+++++... ..|.++....| ++...++.
T Consensus 12 ~~l~~~m~~~G~~l~~~~~~~~~~~p~~~~~~~~~~~vi~Pl-la~~l~~~~~l~~~~--~~glvL~~~~P~~~~s~v~t 88 (286)
T TIGR00841 12 ILLFLIMFSMGCTLEFEDFKGHLRKPWGVIIGLLAQYGIMPL-TGFLLAKVFKLPPEL--AVGVLIVGCCPGGTASNVFT 88 (286)
T ss_pred HHHHHHHHHccCCCcHHHHHHHHhCchHHHHHHHHHHHHHHH-HHHHHHHHhCCCHHH--HHHHHheeeCCCchHHHHHH
Confidence 3388899999999999999876652 333333 34444333 334444456665433 33333333333 33334555
Q ss_pred HcCCCCChhhHHHHHHHHhHHHHHHHHH
Q 001810 735 ERGESTSRHGRATFSVLLFQDLAVVVLL 762 (1010)
Q Consensus 735 elg~l~s~vGrLlL~~SllnDi~aIVLf 762 (1010)
..-..+.+ +..+...++-+.+++..
T Consensus 89 ~~~~gn~~---la~~~~~~stlls~vt~ 113 (286)
T TIGR00841 89 YLLKGDMA---LSISMTTCSTLLALGMM 113 (286)
T ss_pred HHhCCCHh---hhhHHHHHHHHHHHHHH
Confidence 44322333 33333444444444444
No 44
>PF03601 Cons_hypoth698: Conserved hypothetical protein 698; InterPro: IPR018383 This entry represents a family of uncharacterised multi-pass membrane proteins.; GO: 0016021 integral to membrane
Probab=96.95 E-value=0.028 Score=63.59 Aligned_cols=154 Identities=16% Similarity=0.102 Sum_probs=101.9
Q ss_pred HHHHHHHHHHHH----HhchhHHHHHHHHHHHcCC-C-chhHHHHHHHHhHHHHHHHHHHHHhhcccChhhhhhhhhhHH
Q 001810 829 LLVILGTSLLTA----RAGLSMALGAFLAGLLLAE-T-EFSLQVESDIAPYRGLLLGLFFMTVGMSIDPKLLLSNFPVIT 902 (1010)
Q Consensus 829 Lll~f~~~llAe----~lGlSgvLGAFiAGLiLs~-~-~~~~~L~e~l~~i~~~f~PLFFVlIGl~Ldl~~L~~~~~~ii 902 (1010)
+++....++++. ..++++++=|.+.|++++| . ...+....-++.....++.+=-+++|+++++..+....+..+
T Consensus 7 ~~ia~~a~~l~~~~~~~~~l~~~~~AillG~~i~n~~~~~~~~~~~Gi~~~~k~~Lr~gIVLlG~~l~~~~i~~~G~~~~ 86 (305)
T PF03601_consen 7 FAIAILAYFLASLPFFLPGLGALLIAILLGMLIGNLFFGLPARFKPGIKFSSKKLLRLGIVLLGFRLSFSDILALGWKGL 86 (305)
T ss_pred HHHHHHHHHHHhCcccccCccHHHHHHHHHHHHhhhccCCcHHHHhHHHHHHHHHHHHHHHHHCccccHHHHHHhCccHH
Confidence 344444444544 4688899999999999998 3 344445444554455777777788999999998876433333
Q ss_pred HHHHHHHHH-HHHHHHHHHHhhCCChHHHHHHHHHHhhHHHHHHHHHHHHHhCCCCChhh-----HHHHHHHHHHHHHHH
Q 001810 903 GALGLLIGG-KTILVALVGRLFGVSVISAIRTGLLLAPGGEFAFVAFGEAVNQVCFQPHT-----VFLIPNGISIYLQLI 976 (1010)
Q Consensus 903 lillvvil~-K~l~v~l~~~~~gl~~real~IGl~LaprG~vaLVLa~iAls~GiIs~~~-----lVvlvVVlS~IItPi 976 (1010)
++.++.+.. =++..|+..+++|++++.+..++.+.+.-|.-+++...-..+.+ +++. .+.+.-++.+++-|+
T Consensus 87 ~~~~~~v~~~~~~~~~lg~r~~~l~~~~~~Lia~GtsICG~SAi~A~a~~i~a~--~~~~a~ava~V~lfg~vam~~~P~ 164 (305)
T PF03601_consen 87 LIIIIVVILTFLLTYWLGRRLFGLDRKLAILIAAGTSICGASAIAATAPVIKAK--EEDVAYAVATVFLFGTVAMFLYPL 164 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhhcccchHHHHHHHcccccCC--CCceeeeehHHHHHHHHHHHHHHH
Confidence 333333333 44444455599999999999999998888887777655444433 2222 455555667788899
Q ss_pred HHHHHhhc
Q 001810 977 MIFFFFNC 984 (1010)
Q Consensus 977 L~~l~~~~ 984 (1010)
+.++....
T Consensus 165 l~~~l~l~ 172 (305)
T PF03601_consen 165 LGHALGLS 172 (305)
T ss_pred HHHHhCCC
Confidence 98885543
No 45
>TIGR00832 acr3 arsenical-resistance protein. The first protein of the ACR3 family functionally characterized was the ACR3 protein of Saccharomyces cerevisiae. It is present in the yeast plasma membrane and pumps arsenite out of the cell in response to the pmf. Similar proteins are found in bacteria, often as part of a four gene operon with an regulatory protein ArsR, a protein of unknown function ArsH, and an arsenate reductase that converts arsenate to arsenite to facilitate transport.
Probab=96.94 E-value=0.24 Score=56.69 Aligned_cols=98 Identities=10% Similarity=0.077 Sum_probs=54.8
Q ss_pred HHHHHHHHHHhhcCChhHHHhchhh---HHHHHHHHHHHHHHHHHHHHHH-hcCCChHHHHHHhhhcccCcHHHHHH-HH
Q 001810 659 FGVVFLLFNIGLELSVERLSSMKKY---VFGLGSAQVLVTAVVVGLVAHF-VSGLPGPASIVIGNGLALSSTAVVLQ-VL 733 (1010)
Q Consensus 659 LGLi~LLF~aGLEidl~~Lrr~~k~---il~LAlv~vllt~~~Vg~la~~-l~Gls~~~ALLLGaILSaTSpAVvv~-IL 733 (1010)
+++.++||..|++++++++++..++ .+.--+.++++.++ +++.... +++.++. +.+|.++....|..+.+ ++
T Consensus 47 ~~l~~mmf~mgl~L~~~df~~~~~~pk~~~~~~~~qfvi~Pl-la~~l~~l~~~~~p~--l~~GliLv~~~Pgg~~S~v~ 123 (328)
T TIGR00832 47 IGLILMMYPPLAKVDYSALGDVFKDPKGLILSLFINWIIGPF-LMFLLAWLFLRDLFE--YIAGLILLGLARCIAMVFVW 123 (328)
T ss_pred HHHHHHHHHhhhcCCHHHHHHHHcCchHHHHHHHHHHHHHHH-HHHHHHHHHcCCCHH--HHHHHHHHHhcchHHHHHHH
Confidence 4566899999999999999865443 33333344444333 4444443 3455543 66666666666654433 44
Q ss_pred HHcCCCCChhhHHHHHHHHhHHHHHHHHH
Q 001810 734 QERGESTSRHGRATFSVLLFQDLAVVVLL 762 (1010)
Q Consensus 734 ~elg~l~s~vGrLlL~~SllnDi~aIVLf 762 (1010)
.....-+ + .+......++-+.+.++.
T Consensus 124 T~lAkGn--v-alsv~lt~~stLl~~~~~ 149 (328)
T TIGR00832 124 NQLAKGD--P-EYTLVLVAVNSLFQVFLY 149 (328)
T ss_pred HHHcCCC--H-HHHHHHHHHHHHHHHHHH
Confidence 4443212 1 234444556766666655
No 46
>PRK05274 2-keto-3-deoxygluconate permease; Provisional
Probab=96.89 E-value=0.05 Score=62.16 Aligned_cols=134 Identities=16% Similarity=0.078 Sum_probs=72.1
Q ss_pred HHHHHHHHcCCCchhHHHHHHHHhHHHHHHHHHHHHhhcccChhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhCCChH
Q 001810 849 GAFLAGLLLAETEFSLQVESDIAPYRGLLLGLFFMTVGMSIDPKLLLSNFPVITGALGLLIGGKTILVALVGRLFGVSVI 928 (1010)
Q Consensus 849 GAFiAGLiLs~~~~~~~L~e~l~~i~~~f~PLFFVlIGl~Ldl~~L~~~~~~iilillvvil~K~l~v~l~~~~~gl~~r 928 (1010)
.+++.|+.+++ ..+.+.+.+.+-..+++|++-...|..+++..+...-+..+++.+..++......+...++++....
T Consensus 178 lplliG~~lgn--l~~~l~~~~~~Gi~~lLp~~~~~lG~~l~lq~i~~~G~~GilL~~~~~~~t~~~~~~~~Rl~~~~~g 255 (326)
T PRK05274 178 LPLLVGFILGN--LDPELRQFLGKAVPVLIPFFAFALGNGIDLGTIITAGLSGILLGVAVVAVTGIPLYLADRLIGGGNG 255 (326)
T ss_pred HHHHHHHHHHh--HHHhhHHHhcCCcEEEHHHHHHHHhcceeHhHHHhcCCcchhhhhhHhhccchhhHhHhheeecCCC
Confidence 67788888887 3344445555545569999999999999998876542222333333333344434444466643222
Q ss_pred ---HHHHHHHHHhhHHHHHHHHHHHHHhCCCCChhh--HHHHHHHHHHHHHHHHHHHHhhccc
Q 001810 929 ---SAIRTGLLLAPGGEFAFVAFGEAVNQVCFQPHT--VFLIPNGISIYLQLIMIFFFFNCGL 986 (1010)
Q Consensus 929 ---eal~IGl~LaprG~vaLVLa~iAls~GiIs~~~--lVvlvVVlS~IItPiL~~l~~~~~r 986 (1010)
-+...+.+-+.-|..++..+.- ...-..+.. .+..++++|+++.|++..|+.++-+
T Consensus 256 ~~g~a~~ttaG~aic~pAAvaa~~p--~~~~~~~~at~~VA~~vivt~il~P~l~~~~~k~~~ 316 (326)
T PRK05274 256 VAGAAAGSTAGNAVATPAAVAAADP--SFAPFAPAATAQVAAAVIVTAILAPILTAWWSKRVG 316 (326)
T ss_pred cchHHHHHHHHHHHHHHHHHHhhcc--ccccchHhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 2222222222222222111111 111122222 4666778999999999998665433
No 47
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=96.83 E-value=0.043 Score=67.45 Aligned_cols=133 Identities=14% Similarity=0.105 Sum_probs=87.7
Q ss_pred HHHHHHHHHHhcCCCchHHHHHHHHHhhcccccccccCchhHHHHHHHHHHHHHHHHhhcCChhHHHhchhhHHHHHHHH
Q 001810 612 ASVIFVPIFQKIPGGSPVLGYLAAGILIGPYGLSIIRHVHGTKAIAEFGVVFLLFNIGLELSVERLSSMKKYVFGLGSAQ 691 (1010)
Q Consensus 612 ~A~ilg~Ll~Rl~gLP~vVG~ILaGILLGP~gLglI~~~~~le~LaeLGLi~LLF~aGLEidl~~Lrr~~k~il~LAlv~ 691 (1010)
+...++++...+ |+.+.+|-.++|++++..-..- .-...++.+..+.+.+++...|+.+|++.+..++..++.+.++.
T Consensus 224 ~vl~~a~l~~~~-Gls~~LGAFlaGl~l~~s~~~~-~l~~~i~pf~~lll~lFFi~vGm~id~~~l~~~~~~il~~~~~~ 301 (601)
T PRK03659 224 LVLGSALFMDAL-GLSMALGTFIAGVLLAESEYRH-ELEIAIEPFKGLLLGLFFISVGMALNLGVLYTHLLWVLISVVVL 301 (601)
T ss_pred HHHHHHHHHHHh-CccHHHHHHHHHHHhcCCchHH-HHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHhHHHHHHHHHHH
Confidence 344455667778 9999999999999999632110 01223556678888888999999999999988776544443332
Q ss_pred HHHHHHHHHHHHHHhcCCChHHHHHHhhhcccCcHH--HHHHHHHHcCCCCChhhHHH
Q 001810 692 VLVTAVVVGLVAHFVSGLPGPASIVIGNGLALSSTA--VVLQVLQERGESTSRHGRAT 747 (1010)
Q Consensus 692 vllt~~~Vg~la~~l~Gls~~~ALLLGaILSaTSpA--Vvv~IL~elg~l~s~vGrLl 747 (1010)
+++ =++..++...++|+++..++.+|..+++...- ++..+-.+.+.++......+
T Consensus 302 l~~-K~~~~~~~~~~~g~~~~~al~~g~~L~~~Gef~~vl~~~a~~~g~i~~~~~~~l 358 (601)
T PRK03659 302 VAV-KGLVLYLLARLYGLRSSERMQFAGVLSQGGEFAFVLFSAASSQRLLQGDQMALL 358 (601)
T ss_pred HHH-HHHHHHHHHHHhCCCHHHHHHHHHHHhccccHHHHHHHHHHhCCCCCHHHHHHH
Confidence 222 23344455667899999999999888766542 34444556666655444433
No 48
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=96.69 E-value=0.069 Score=65.94 Aligned_cols=116 Identities=23% Similarity=0.257 Sum_probs=78.9
Q ss_pred HHHHHHHHHHHHHHHhchhHHHHHHHHHHHcCCCchhH-HHHHHHHhHHHHHHHHHHHHhhcccChhhhhhhhhhHHHHH
Q 001810 827 NTLLVILGTSLLTARAGLSMALGAFLAGLLLAETEFSL-QVESDIAPYRGLLLGLFFMTVGMSIDPKLLLSNFPVITGAL 905 (1010)
Q Consensus 827 ltLll~f~~~llAe~lGlSgvLGAFiAGLiLs~~~~~~-~L~e~l~~i~~~f~PLFFVlIGl~Ldl~~L~~~~~~iilil 905 (1010)
+.+....+...++..+|+++++|=.++|++++...... .-.+.+..+..+-..++...+|+.+++..++.....++.+.
T Consensus 12 ~~l~~a~i~~~l~~rl~lp~vlgyilaGillGP~~lg~i~~~~~i~~laelGvv~LlF~iGLEl~~~~l~~~~~~~~~~g 91 (621)
T PRK03562 12 IYLGAAVLIVPIAVRLGLGSVLGYLIAGCIIGPWGLRLVTDVESILHFAEFGVVLMLFVIGLELDPQRLWKLRRSIFGGG 91 (621)
T ss_pred HHHHHHHHHHHHHHHhCCChHHHHHHHHHHhCcccccCCCCHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH
Confidence 34555666677888999999999999999998643221 11234566677777788888999999998876543333322
Q ss_pred HHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHhhHHH
Q 001810 906 GLLIGGKTILVALVGRLFGVSVISAIRTGLLLAPGGE 942 (1010)
Q Consensus 906 lvvil~K~l~v~l~~~~~gl~~real~IGl~LaprG~ 942 (1010)
.+-++.-++.++..+++++++|..++.+|..++.-.+
T Consensus 92 ~~qv~~~~~~~~~~~~~~g~~~~~al~ig~~la~SSt 128 (621)
T PRK03562 92 ALQMVACGGLLGLFCMLLGLRWQVALLIGLGLALSST 128 (621)
T ss_pred HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence 2223333444455667789999999999987665443
No 49
>PLN03159 cation/H(+) antiporter 15; Provisional
Probab=96.59 E-value=0.048 Score=69.43 Aligned_cols=93 Identities=11% Similarity=0.123 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHHHhhcCChhHHHhchhhHHHHHHHHH-HHHHHHHHHHHHHhcCCChHHHHHHhhhcccCcHH--HHHHH
Q 001810 656 IAEFGVVFLLFNIGLELSVERLSSMKKYVFGLGSAQV-LVTAVVVGLVAHFVSGLPGPASIVIGNGLALSSTA--VVLQV 732 (1010)
Q Consensus 656 LaeLGLi~LLF~aGLEidl~~Lrr~~k~il~LAlv~v-llt~~~Vg~la~~l~Gls~~~ALLLGaILSaTSpA--Vvv~I 732 (1010)
...+.+++++...|+.+|+..+.......+.+.++.+ ++.=++.+++..++.|+++..++.+|.++++-.-. +++.+
T Consensus 323 ~~~lflPlFFv~vGl~idl~~l~~~~~~~~~~~liv~a~~gK~~g~~l~a~~~g~~~~eal~lG~lm~~kG~~~Lii~~i 402 (832)
T PLN03159 323 VSGLLLPLFFAISGLKTNVTKIQGPATWGLLVLVIIMASAGKIMGTIIIAFFYTMPFREGITLGFLMNTKGLVEMIVLNV 402 (832)
T ss_pred HHHHHHHHHHHHhhheeeHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHhcccHHHHHHHHH
Confidence 3566777788889999999888532211111111111 11112344555667899999999999999876543 34555
Q ss_pred HHHcCCCCChhhHHHH
Q 001810 733 LQERGESTSRHGRATF 748 (1010)
Q Consensus 733 L~elg~l~s~vGrLlL 748 (1010)
-.+.|.++......++
T Consensus 403 g~~~gvi~~~~f~~lV 418 (832)
T PLN03159 403 GRDQEVLDDESFAVMV 418 (832)
T ss_pred HHhcCccCchhhhHHH
Confidence 5667766655554444
No 50
>TIGR00932 2a37 transporter, monovalent cation:proton antiporter-2 (CPA2) family.
Probab=96.44 E-value=0.13 Score=56.47 Aligned_cols=109 Identities=23% Similarity=0.323 Sum_probs=74.8
Q ss_pred HHHHHHHHHHhchhHHHHHHHHHHHcCCCchhH-HHHHHHHhHHHHHHHHHHHHhhcccChhhhhhhhhhHHHHHHHHHH
Q 001810 832 ILGTSLLTARAGLSMALGAFLAGLLLAETEFSL-QVESDIAPYRGLLLGLFFMTVGMSIDPKLLLSNFPVITGALGLLIG 910 (1010)
Q Consensus 832 ~f~~~llAe~lGlSgvLGAFiAGLiLs~~~~~~-~L~e~l~~i~~~f~PLFFVlIGl~Ldl~~L~~~~~~iilillvvil 910 (1010)
.+....++..++++.+++-.++|++++..-... .-.+.++.+..+-..++....|+++|++.+...+.....+....++
T Consensus 4 a~~~~~l~~~l~lP~~v~~il~GillGp~~lg~i~~~~~~~~l~~igl~~llF~~Gl~~d~~~l~~~~~~~~~~~~~~~~ 83 (273)
T TIGR00932 4 AVLAVPLSRRLGIPSVLGYLLAGVLIGPSGLGLISNVEGVNHLAEFGVILLMFLIGLELDLERLWKLRKAAFGVGVLQVL 83 (273)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHhCcccccCCCChHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHH
Confidence 344567888999999999999999998642211 1112355566677778888899999999887665443333333333
Q ss_pred HH-HHHHHHHHHhhCCChHHHHHHHHHHhhH
Q 001810 911 GK-TILVALVGRLFGVSVISAIRTGLLLAPG 940 (1010)
Q Consensus 911 ~K-~l~v~l~~~~~gl~~real~IGl~Lapr 940 (1010)
.= ++..+...++++.++.+++.+|..+++-
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~lg~~ls~T 114 (273)
T TIGR00932 84 VPGVLLGLLLGHLLGLALGAAVVIGIILALS 114 (273)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 33 4444556677899999999999877754
No 51
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=96.39 E-value=5.9 Score=52.26 Aligned_cols=17 Identities=12% Similarity=0.331 Sum_probs=8.0
Q ss_pred HHHHHhhhHHHHHHHHH
Q 001810 290 ELRRLQSKKEELQKEVD 306 (1010)
Q Consensus 290 ~l~~~~~~~~~lq~~~~ 306 (1010)
++.++|.+.+.||+.++
T Consensus 216 ~~~~l~~~~~~Lq~~in 232 (1109)
T PRK10929 216 RSQQLDAYLQALRNQLN 232 (1109)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44444444455555444
No 52
>TIGR00698 conserved hypothetical integral membrane protein. Members of this family are found so far only in one archaeal species, Archaeoglobus fulgidus, and in two related bacterial species, Haemophilus influenzae and Escherichia coli. It has 9 GES predicted transmembrane regions at conserved locations in all members. These proteins have a molecular weight of approximately 35 to 38 kDa.
Probab=96.37 E-value=0.11 Score=59.53 Aligned_cols=139 Identities=17% Similarity=0.115 Sum_probs=87.8
Q ss_pred hchhHHHHHHHHHHHcCCCc---hhHHHHHHHHhHHHHHHHHHHHHhhcccChhhhhhhhhhHHHHHHHHHHHHHHH-HH
Q 001810 842 AGLSMALGAFLAGLLLAETE---FSLQVESDIAPYRGLLLGLFFMTVGMSIDPKLLLSNFPVITGALGLLIGGKTIL-VA 917 (1010)
Q Consensus 842 lGlSgvLGAFiAGLiLs~~~---~~~~L~e~l~~i~~~f~PLFFVlIGl~Ldl~~L~~~~~~iilillvvil~K~l~-v~ 917 (1010)
.++++++=+.+.|++++|.- .......-++-....++-+=-++.|+++++..+....+..+.+.++.+..-+.. .|
T Consensus 29 ~~l~~~~~AillG~~l~n~~~~~~~~~~~~Gi~f~~k~lLr~gIVLlG~~l~~~~i~~~G~~~l~~~~~~v~~~~~~~~~ 108 (335)
T TIGR00698 29 PALSALFLAILLGMVAGNTIYPQRDEEKKRGVLFAKPFLLRIGITLYGFRLTFPYIADVGPNEIVADTLILTSTFFLTVF 108 (335)
T ss_pred CCCcHHHHHHHHHHHHhccccccchhhccchHHHHHHHHHHHHHHHHCccccHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 57888888999999999842 222222222222344555556778999999988764333334333334444444 45
Q ss_pred HHHHhhCCChHHHHHHHHHHhhHHHHHHHHHHHHHhCCCCChhh-----HHHHHHHHHHHHHHHHHHHHh
Q 001810 918 LVGRLFGVSVISAIRTGLLLAPGGEFAFVAFGEAVNQVCFQPHT-----VFLIPNGISIYLQLIMIFFFF 982 (1010)
Q Consensus 918 l~~~~~gl~~real~IGl~LaprG~vaLVLa~iAls~GiIs~~~-----lVvlvVVlS~IItPiL~~l~~ 982 (1010)
+..+++|++++.+..++.+.+.-|.-+++...-..+.. +++. .+++.-.+.+++-|++..++.
T Consensus 109 ~g~k~l~l~~~~~~Lia~GtsICGaSAi~A~a~~i~A~--~~~~a~ava~V~lfgt~am~l~P~l~~~l~ 176 (335)
T TIGR00698 109 LGSSRLKLDKQMSILLGAGSSICGAAAVAAIEPVIKAE--KEKVSVAIAIVVIFGTTGIFLYPSIYHYAS 176 (335)
T ss_pred HHHHHhCCChhHHHHHHcchhHHHHHHHHHhccccCCC--ccceeeeehHHHHHHHHHHHHHHHHHHHHc
Confidence 55578999999999999998888887766544333332 1222 344555567778888887754
No 53
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=96.14 E-value=0.23 Score=60.49 Aligned_cols=132 Identities=19% Similarity=0.197 Sum_probs=81.8
Q ss_pred HHHHHHHHHHHHHHhchhHHHHHHHHHHHcCCCchhH-HHHHHHHhHHHHHHHHHHHHhhcccChhhhhhhhhhHHHHHH
Q 001810 828 TLLVILGTSLLTARAGLSMALGAFLAGLLLAETEFSL-QVESDIAPYRGLLLGLFFMTVGMSIDPKLLLSNFPVITGALG 906 (1010)
Q Consensus 828 tLll~f~~~llAe~lGlSgvLGAFiAGLiLs~~~~~~-~L~e~l~~i~~~f~PLFFVlIGl~Ldl~~L~~~~~~iilill 906 (1010)
++++.+.+..++..++++.++|=.++|++++...... .-.+.++.+..+-..++...+|+.+|++.+.......+...+
T Consensus 14 ~l~~a~~~~~l~~rl~~P~ivg~IlaGillGp~~lg~~~~~~~~~~la~lGli~llF~~Gle~d~~~l~~~~~~~~~~~~ 93 (558)
T PRK10669 14 GLVLAFILGMLANRLRISPLVGYLLAGVLAGPFTPGFVADTKLAPELAELGVILLMFGVGLHFSLKDLMAVKSIAIPGAI 93 (558)
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHhhCccccccccchHHHHHHHHHHHHHHHHHhHhcCCHHHHHHHhhHHHHHHH
Confidence 3455566667788899999999999999998643221 011334556666667777778999999887654222221112
Q ss_pred HHHHHHHHHHHHHHHhhCCChHHHHHHHHHHhhHHHHHHHHHHHHHhCCCCChhh
Q 001810 907 LLIGGKTILVALVGRLFGVSVISAIRTGLLLAPGGEFAFVAFGEAVNQVCFQPHT 961 (1010)
Q Consensus 907 vvil~K~l~v~l~~~~~gl~~real~IGl~LaprG~vaLVLa~iAls~GiIs~~~ 961 (1010)
.-++.=++..++..+.+++++..++.+|..++.-.. .++..+..+.|.++.+.
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~al~lg~~ls~tS~--~vv~~~L~e~~~l~s~~ 146 (558)
T PRK10669 94 AQIAVATLLGMALSAVLGWSLMTGIVFGLCLSTAST--VVLLRALEERQLIDSQR 146 (558)
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH--HHHHHHHHhcCcccCcc
Confidence 222223344445566778999999999877666332 33344555666665543
No 54
>COG2855 Predicted membrane protein [Function unknown]
Probab=96.12 E-value=0.11 Score=59.25 Aligned_cols=144 Identities=15% Similarity=0.147 Sum_probs=96.2
Q ss_pred HHHHHhchhHHHHHHHHHHHcCCC-chhHHHHHHHHhHHHHHHHHHHHHhhcccChhhhhhhhhhHHHHHHHHHHHHHHH
Q 001810 837 LLTARAGLSMALGAFLAGLLLAET-EFSLQVESDIAPYRGLLLGLFFMTVGMSIDPKLLLSNFPVITGALGLLIGGKTIL 915 (1010)
Q Consensus 837 llAe~lGlSgvLGAFiAGLiLs~~-~~~~~L~e~l~~i~~~f~PLFFVlIGl~Ldl~~L~~~~~~iilillvvil~K~l~ 915 (1010)
......|+++.+=|.+.|+++++. +.+.+...-++-....++.+=-++.|+++++..+.+..+-.+.+.+..+..-++.
T Consensus 30 ~~~~~~~l~al~lAIllGi~l~~l~~~~~~~~~GI~fs~k~LLr~gIvLlG~~ltl~~i~~~G~~~v~~~~~~l~~t~~~ 109 (334)
T COG2855 30 FFSIHLGLSALTLAILLGILLGILPQIPAQTSAGITFSSKKLLRLGIVLLGFRLTLSDIADVGGSGVLIIAITLSSTFLF 109 (334)
T ss_pred HHhhhcCchHHHHHHHHHHHHhccccchhhhccchhhhHHHHHHHHHHHHcceeeHHHHHHcCccHHHHHHHHHHHHHHH
Confidence 345566777888899999999864 3334444444444567777777889999999988775444555666666777777
Q ss_pred HHHHHHhhCCChHHHHHHHHHHhhHHHHHHHHHHHHHhCCCCChhh--HHHHHH---HHHHHHHHHHHHHHh
Q 001810 916 VALVGRLFGVSVISAIRTGLLLAPGGEFAFVAFGEAVNQVCFQPHT--VFLIPN---GISIYLQLIMIFFFF 982 (1010)
Q Consensus 916 v~l~~~~~gl~~real~IGl~LaprG~vaLVLa~iAls~GiIs~~~--lVvlvV---VlS~IItPiL~~l~~ 982 (1010)
.++..+++|++++.++.+|.+-+.-|.-++....-.... -+++. .+..++ .+.+++-|++..+..
T Consensus 110 ~~~lg~~lgld~~~a~Lia~GssICGasAiaA~~pvika--~~~eva~aIa~V~lfgtia~llyP~l~~~l~ 179 (334)
T COG2855 110 AYFLGKLLGLDKKLALLIAAGSSICGASAIAATAPVIKA--EEEEVAVAIAVVVLFGTLAMLLYPLLYPLLG 179 (334)
T ss_pred HHHHHHHhCCCHHHHHHHHccchhhHHHHHHHhCCcCCC--CccccceehhhHHHHHHHHHHHHHHHHHHhC
Confidence 888888999999999999998887777666544322221 12222 223333 334455677777744
No 55
>PRK03818 putative transporter; Validated
Probab=95.71 E-value=0.11 Score=63.39 Aligned_cols=104 Identities=20% Similarity=0.319 Sum_probs=66.7
Q ss_pred HHHHHHHHHHHHHHhcCCCc----hHHHHHHHHHhhcccc--cccccCchhHHHHHHHHHHHHHHHHhhcCChhHHHhch
Q 001810 608 WLLLASVIFVPIFQKIPGGS----PVLGYLAAGILIGPYG--LSIIRHVHGTKAIAEFGVVFLLFNIGLELSVERLSSMK 681 (1010)
Q Consensus 608 lLLl~A~ilg~Ll~Rl~gLP----~vVG~ILaGILLGP~g--LglI~~~~~le~LaeLGLi~LLF~aGLEidl~~Lrr~~ 681 (1010)
++++++..+|+++-|+ +++ .+.|.+++|+++|... ++..-+.....++.++|+.+++|.+|++.-...+...+
T Consensus 9 ~~l~l~i~lG~~lG~i-~i~g~~LG~~g~L~~gl~~G~~~~~~~~~~~~~~~~~~~~~gl~lFv~~vGl~~Gp~f~~~l~ 87 (552)
T PRK03818 9 SILALVAVVGLWIGNI-KIRGVGLGIGGVLFGGIIVGHFVSQFGLTLDSDMLHFIQEFGLILFVYTIGIQVGPGFFSSLR 87 (552)
T ss_pred HHHHHHHHHHHhhcce-EECCCccccHHHHHHHHHHhccccccCcccChHHHHHHHHHHHHHHHHHHhhcccHHHHHHHH
Confidence 3444444455555555 332 2479999999999722 23222445567899999999999999999987665433
Q ss_pred ---hhHHHHHHHHHHHHHHHHHHHHHHhcCCChHH
Q 001810 682 ---KYVFGLGSAQVLVTAVVVGLVAHFVSGLPGPA 713 (1010)
Q Consensus 682 ---k~il~LAlv~vllt~~~Vg~la~~l~Gls~~~ 713 (1010)
.....++++-++++ .++++++++++++++..
T Consensus 88 ~~G~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 121 (552)
T PRK03818 88 KSGLRLNLFAVLIVILG-GLVTAILHKLFGIPLPV 121 (552)
T ss_pred HhhHHHHHHHHHHHHHH-HHHHHHHHHHhCCCHHH
Confidence 34444554444433 45566677888887653
No 56
>PRK11281 hypothetical protein; Provisional
Probab=95.63 E-value=12 Score=49.50 Aligned_cols=20 Identities=30% Similarity=0.225 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHhhh
Q 001810 224 TMALSLAEARLQVAIESLQD 243 (1010)
Q Consensus 224 ~~~~~~a~~~~~~~~~~~~~ 243 (1010)
.-.++-|..|+|.+...+.+
T Consensus 162 Q~~lsea~~RlqeI~~~L~~ 181 (1113)
T PRK11281 162 QAALYANSQRLQQIRNLLKG 181 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHhC
Confidence 33556666677776665554
No 57
>COG0475 KefB Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]
Probab=95.56 E-value=0.45 Score=55.81 Aligned_cols=116 Identities=17% Similarity=0.219 Sum_probs=85.2
Q ss_pred HHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHhhcccccccccCchhHHHHHH-HHHHHHHHHHhhcCChhHHHhchhhH
Q 001810 606 VLWLLLASVIFVPIFQKIPGGSPVLGYLAAGILIGPYGLSIIRHVHGTKAIAE-FGVVFLLFNIGLELSVERLSSMKKYV 684 (1010)
Q Consensus 606 illLLl~A~ilg~Ll~Rl~gLP~vVG~ILaGILLGP~gLglI~~~~~le~Lae-LGLi~LLF~aGLEidl~~Lrr~~k~i 684 (1010)
+...+.+...++++...+ |+++++|-.++|+++.-.-.+-.+-.+.++.+.+ +.+++++...|+.+|++.+..++..+
T Consensus 224 ~~~~l~i~l~~a~l~e~~-gls~ilGAFlaGl~ls~~~~~~~~l~~~i~~~~~~~fiplFFi~vG~~~dl~~l~~~~~~~ 302 (397)
T COG0475 224 ILFVLLLVLGAAYLAELL-GLSMILGAFLAGLLLSESEYRKHELEEKIEPFGDGLFIPLFFISVGMSLDLGVLLENLLLI 302 (397)
T ss_pred HHHHHHHHHHHHHHHHHh-ChhHHHHHHHHHHHhcccccchHHHHHHHHhHHhHHHHHHHHHHhhHHcCHHHHhccHHHH
Confidence 445555666677788888 9999999999999999653331122456788888 88999999999999999999988775
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHhhhccc
Q 001810 685 FGLGSAQVLVTAVVVGLVAHFVSGLPGPASIVIGNGLAL 723 (1010)
Q Consensus 685 l~LAlv~vllt~~~Vg~la~~l~Gls~~~ALLLGaILSa 723 (1010)
+.+..+.++. =+..+++..+..|++...++..|...+.
T Consensus 303 l~~~~~~i~~-K~~~~~~~~~~~g~~~~~~~~~g~~~~~ 340 (397)
T COG0475 303 LLLVALAILG-KILGAYLAARLLGFSKRLALGIGLLLRQ 340 (397)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHcCcHHHHHHHHhhhhh
Confidence 5444443332 3455666677788888888888776654
No 58
>COG0679 Predicted permeases [General function prediction only]
Probab=95.31 E-value=6.8 Score=44.50 Aligned_cols=135 Identities=19% Similarity=0.199 Sum_probs=86.2
Q ss_pred hhHHHHHHHHHHHcCC--CchhHHHHHHHHhHHHHHHHHHHHHhhcccChhhhhhh-hhhHHHHHHHHHHHHHHHHHHHH
Q 001810 844 LSMALGAFLAGLLLAE--TEFSLQVESDIAPYRGLLLGLFFMTVGMSIDPKLLLSN-FPVITGALGLLIGGKTILVALVG 920 (1010)
Q Consensus 844 lSgvLGAFiAGLiLs~--~~~~~~L~e~l~~i~~~f~PLFFVlIGl~Ldl~~L~~~-~~~iilillvvil~K~l~v~l~~ 920 (1010)
.+|.+=+++.|+++.. -+....+.+.++.+.+.-.|+-.+.+|+.++.....+. ++.+........+.-++..+...
T Consensus 167 ~nP~i~a~i~g~~~~~~~i~lP~~~~~~~~~l~~a~~pl~li~lG~~L~~~~~~~~~~~~~~~~~~~kll~~Pl~~~~~~ 246 (311)
T COG0679 167 TNPLIIALILGLLLNLLGISLPAPLDTAVDLLASAASPLALIALGLSLAFLKLKGSKPPIILIALSLKLLLAPLVALLVA 246 (311)
T ss_pred hCcHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhhhhHHHHHHhhhcchhhhccccchhHHHHHHHHHHHHHHHHHHHH
Confidence 4566666777777764 33445677778888899999999999999998544433 33333333445777888888888
Q ss_pred HhhCCChHHHH-HHHHHHhhHHHHHHHHHHHHHhCCCCChhh--HHHHHHHHHHHHHHHHHHHH
Q 001810 921 RLFGVSVISAI-RTGLLLAPGGEFAFVAFGEAVNQVCFQPHT--VFLIPNGISIYLQLIMIFFF 981 (1010)
Q Consensus 921 ~~~gl~~real-~IGl~LaprG~vaLVLa~iAls~GiIs~~~--lVvlvVVlS~IItPiL~~l~ 981 (1010)
+..+++.-+.. .+=....|.+....+++ .+.+.-.+.. .+....+++.+..|.+..+.
T Consensus 247 ~~~~l~~~~~~v~vl~~a~P~A~~~~v~a---~~~~~~~~laa~~i~ist~ls~~t~p~~~~~l 307 (311)
T COG0679 247 KLLGLSGLALQVLVLLSAMPTAVNAYVLA---RQYGGDPRLAASTILLSTLLSLLTLPLLILLL 307 (311)
T ss_pred HHcCCChHHHHHHHHHhhCcHHhHHHHHH---HHhCCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888765441 11122356655555544 4455433333 56667777777777766654
No 59
>TIGR03802 Asp_Ala_antiprt aspartate-alanine antiporter. All members of the seed alignment for this model are asparate-alanine anti-transporters (AspT) encoded next to the gene for aspartate 4-decarboxylase (AspD), which converts asparate to alanine, releasing CO2. The exchange of Asp for Ala is electrogenic, so the AspD/AspT system confers a proton-motive force. This transporter contains two copies of the AspT/YidE/YbjL antiporter duplication domain (TIGR01625).
Probab=95.24 E-value=0.18 Score=61.60 Aligned_cols=124 Identities=20% Similarity=0.255 Sum_probs=79.1
Q ss_pred HHHHHHHHHHHHHHHhcC----CCchHHHHHHHHHhhcccccccccCchhHHHHHHHHHHHHHHHHhhcCChhHHHhchh
Q 001810 607 LWLLLASVIFVPIFQKIP----GGSPVLGYLAAGILIGPYGLSIIRHVHGTKAIAEFGVVFLLFNIGLELSVERLSSMKK 682 (1010)
Q Consensus 607 llLLl~A~ilg~Ll~Rl~----gLP~vVG~ILaGILLGP~gLglI~~~~~le~LaeLGLi~LLF~aGLEidl~~Lrr~~k 682 (1010)
.+.++++..+|+++-|+. ++-.+.|-+++|+++|..++.+ .+.+.++|+.+++|.+|++.-+..++..++
T Consensus 12 ~l~lfl~i~lG~~lG~iki~~~~LG~~~gvLfvgl~~G~~g~~i------~~~v~~~gl~lFvy~vG~~~Gp~Ff~~l~~ 85 (562)
T TIGR03802 12 EIALFLSLALGYLIGKIKFGSFQLGGVAGSLIVAVLIGQLGIQI------DPGVKAVFFALFIFAIGYEVGPQFFASLKK 85 (562)
T ss_pred HHHHHHHHHHhHhhcceEEeeeecchHHHHHHHHHHHHhcCCCC------ChHHHHHHHHHHHHHhhhccCHHHHHHHHh
Confidence 344555666666666651 3445789999999999865432 234678999999999999999987765544
Q ss_pred ---hHHHHHHHHHHHHHHHHHHHHHHhcCCCh--HHHHHHhhhcccCcHHHHHHHHHHcC
Q 001810 683 ---YVFGLGSAQVLVTAVVVGLVAHFVSGLPG--PASIVIGNGLALSSTAVVLQVLQERG 737 (1010)
Q Consensus 683 ---~il~LAlv~vllt~~~Vg~la~~l~Gls~--~~ALLLGaILSaTSpAVvv~IL~elg 737 (1010)
+...++++.++ ..+++.+.+++++|++. ...++-|+.-+.+..+.+...+...+
T Consensus 86 ~g~~~~~~a~~~~~-~~~~~~~~~~~~~g~~~~~~~Gl~aGalT~tp~l~aA~~a~~~~~ 144 (562)
T TIGR03802 86 DGLREIILALVFAV-SGLITVYALAKIFGLDKGTAAGLAAGGLTQSAVIGTAGDAIEKLG 144 (562)
T ss_pred ccHHHHHHHHHHHH-HHHHHHHHHHHHhCCCHHHHHHHHhchhhccHHHHHHHHHHHhcC
Confidence 33444443333 33556667777888864 44455554443333345555666555
No 60
>TIGR03082 Gneg_AbrB_dup membrane protein AbrB duplication. The model describes a hydrophobic sequence region that is duplicated to form the AbrB protein of Escherichia coli (not to be confused with a Bacillus subtilis protein with the same gene symbol). In some species, notably the Cyanobacteria and Thermus thermophilus, proteins consist of a single copy rather than two copies. The member from Pseudomonas putida, PP_1415, was suggested to be an ammonia monooxygenase characteristic of heterotrophic nitrifiers, based on an experimental indication of such activity in the organism and a glimmer of local sequence similarity between parts of P. putida protein and an instance of the AmoA protein from Nitrosomonas europaea (PubMed:9732537); we do not believe the sequence similarity to be meaningful. The member from E. coli (b0715, ybgN) appears to be the largely uncharacterized AbrB (aidB regulator) protein of E. coli cited in Volkert, et al. (PubMed 8002588), although we did not manage to tra
Probab=95.22 E-value=0.28 Score=50.27 Aligned_cols=105 Identities=18% Similarity=0.195 Sum_probs=72.9
Q ss_pred HHHHHHHHHHHHHHhcCCCc--hHHHHHHHHHhhcccccccccCchhHHHHHHHHHHHHHHHHhhcCChhHHHhchhhHH
Q 001810 608 WLLLASVIFVPIFQKIPGGS--PVLGYLAAGILIGPYGLSIIRHVHGTKAIAEFGVVFLLFNIGLELSVERLSSMKKYVF 685 (1010)
Q Consensus 608 lLLl~A~ilg~Ll~Rl~gLP--~vVG~ILaGILLGP~gLglI~~~~~le~LaeLGLi~LLF~aGLEidl~~Lrr~~k~il 685 (1010)
+++.++.+.+.+++++ |+| ..+|-++++.++.-.+.. +......+..++.+++-...|.+++...+++..+...
T Consensus 2 ~~~~~~~~~g~l~~~l-~~Pa~~llG~mi~~~~~~~~~~~---~~~~P~~~~~~~qviiG~~iG~~f~~~~l~~~~~~~~ 77 (156)
T TIGR03082 2 LLLLVGLAGGLLASLL-GLPAAWLLGPLLAGAVLSLAGGL---EITLPPWLLALAQVVIGILIGSRFTREVLAELKRLWP 77 (156)
T ss_pred HHHHHHHHHHHHHHHH-CCCcHHHHHHHHHHHHHHhcCCc---cCCCCHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 4566788889999999 888 568888888887743211 2334456778888999999999999998876655433
Q ss_pred H--HHHHHHHHHHHHHHHHHHHhcCCChHHHHH
Q 001810 686 G--LGSAQVLVTAVVVGLVAHFVSGLPGPASIV 716 (1010)
Q Consensus 686 ~--LAlv~vllt~~~Vg~la~~l~Gls~~~ALL 716 (1010)
. +.++..++..++.+++.+++.++++..+++
T Consensus 78 ~~l~~~~~~l~~~~~~~~~l~~~~~~~~~ta~L 110 (156)
T TIGR03082 78 AALLSTVLLLALSALLAWLLARLTGVDPLTAFL 110 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
Confidence 2 222222333455666777778999888764
No 61
>PRK05326 potassium/proton antiporter; Reviewed
Probab=95.15 E-value=0.46 Score=57.98 Aligned_cols=115 Identities=15% Similarity=0.136 Sum_probs=78.8
Q ss_pred HHHHHHHHHHHHHHhchhHHHHHHHHHHHcCCCchh---HHHHHHHHhHHHHHHHHHHHHhhcccChhhhhhhhhhHHHH
Q 001810 828 TLLVILGTSLLTARAGLSMALGAFLAGLLLAETEFS---LQVESDIAPYRGLLLGLFFMTVGMSIDPKLLLSNFPVITGA 904 (1010)
Q Consensus 828 tLll~f~~~llAe~lGlSgvLGAFiAGLiLs~~~~~---~~L~e~l~~i~~~f~PLFFVlIGl~Ldl~~L~~~~~~iili 904 (1010)
.+++...+..++..+|++.+++-.++|++++..... ..-.+..+.+..+.++++....|+++++..+...++.++.+
T Consensus 14 ll~l~~~~~~l~~r~~~P~ll~~il~GillGp~~lg~i~~~~~~~~~~i~~l~L~~iLF~~Gl~~~~~~l~~~~~~~~~l 93 (562)
T PRK05326 14 LLLLSILASRLSSRLGIPSLLLFLAIGMLAGEDGLGGIQFDNYPLAYLVGNLALAVILFDGGLRTRWSSFRPALGPALSL 93 (562)
T ss_pred HHHHHHHHHHHHHHcCCcHHHHHHHHHHHhCccccCCcccCcHHHHHHHHHHHHHHHHHcCccCCCHHHHHHHHHHHHHH
Confidence 344455566788889999999999999999874322 11113345567788888888899999999988766554433
Q ss_pred HHHHHHHHH-HHHHHHHHhhCCChHHHHHHHHHHhhHHH
Q 001810 905 LGLLIGGKT-ILVALVGRLFGVSVISAIRTGLLLAPGGE 942 (1010)
Q Consensus 905 llvvil~K~-l~v~l~~~~~gl~~real~IGl~LaprG~ 942 (1010)
..+.++.=+ +..+...++++++|.+++.+|..+++-..
T Consensus 94 a~~gv~~t~~~~g~~~~~l~g~~~~~alllgai~s~Td~ 132 (562)
T PRK05326 94 ATLGVLITAGLTGLFAHWLLGLDWLEGLLLGAIVGSTDA 132 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCHHHHHHHhhhhccCch
Confidence 333333333 33455667789999999999987776543
No 62
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=94.93 E-value=2.8 Score=53.96 Aligned_cols=53 Identities=17% Similarity=0.243 Sum_probs=38.7
Q ss_pred CCCCcchhhHHHHHhhhHHHHHHHHHhhHHHHHHHhhhHHHHHHHHHHHHHHH
Q 001810 260 KSDGKEEDGLLLAAENDIKECQANLANCETELRRLQSKKEELQKEVDRLNEVA 312 (1010)
Q Consensus 260 ~~~~~~~~~~~~~a~~~~~~~~~~l~~~~~~l~~~~~~~~~lq~~~~~l~~~~ 312 (1010)
+.|++.-++.|..+|++-...+..+.+...+|+.|..+.+||+.+...-.+-|
T Consensus 1590 ~~~~~~a~~~l~kv~~~t~~aE~~~~~a~q~~~eL~~~~e~lk~~~~qns~~A 1642 (1758)
T KOG0994|consen 1590 DRDIRLAQQLLAKVQEETAAAEKLATSATQQLGELETRMEELKHKAAQNSAEA 1642 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHH
Confidence 45666777777777888888888888888888888888888877665544433
No 63
>TIGR00831 a_cpa1 Na+/H+ antiporter, bacterial form. This model is specific for the bacterial members of this family.
Probab=94.84 E-value=0.3 Score=59.23 Aligned_cols=116 Identities=22% Similarity=0.242 Sum_probs=74.0
Q ss_pred HHHHHHHHHHHHHhchhHHHHHHHHHHHcCCCchhHHHHHHHHhHHHHHHHHHHHHhhcccChhhhhhhhhhHHHHHHHH
Q 001810 829 LLVILGTSLLTARAGLSMALGAFLAGLLLAETEFSLQVESDIAPYRGLLLGLFFMTVGMSIDPKLLLSNFPVITGALGLL 908 (1010)
Q Consensus 829 Lll~f~~~llAe~lGlSgvLGAFiAGLiLs~~~~~~~L~e~l~~i~~~f~PLFFVlIGl~Ldl~~L~~~~~~iilillvv 908 (1010)
++.+.+...++..++++++++-+++|++++..+....+.-.-+.+..++.|+.....|++++...+..++..++.+.+..
T Consensus 7 ~~~~~~~~~l~~r~~lP~~v~lil~Gi~lg~~~~~~~~~~~~~~~~~~~Lp~lLF~~g~~~~~~~l~~~~~~i~~la~~~ 86 (525)
T TIGR00831 7 VMLATAVAVTVKFIRLPYPIALILAGLLLGLAGLLPEVPLDREIVLFLFLPPLLFEAAMNTDLRELRENFRPIALIAFLL 86 (525)
T ss_pred HHHHHHHHHHhcccCCCHHHHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence 34444455677788888888888888888753221111000012345677888788899999999988765554444433
Q ss_pred HHHH-HHHHHHHHHhhCCChHHHHHHHHHHhhHHHHH
Q 001810 909 IGGK-TILVALVGRLFGVSVISAIRTGLLLAPGGEFA 944 (1010)
Q Consensus 909 il~K-~l~v~l~~~~~gl~~real~IGl~LaprG~va 944 (1010)
++.- .+..++..++.++++..++.+|..++|-..++
T Consensus 87 vlit~~~v~~~~~~~~~l~~~~alllGails~TDpva 123 (525)
T TIGR00831 87 VVVTTVVVGFSLNWILGIPLALALILGAVLSPTDAVA 123 (525)
T ss_pred HHHHHHHHHHHHHHHhcccHHHHHHHHHHhCCCCHHH
Confidence 3333 33344444567899999999998888766554
No 64
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=94.82 E-value=2.3 Score=52.26 Aligned_cols=92 Identities=17% Similarity=0.188 Sum_probs=56.2
Q ss_pred cchhhHHHHHhhhHHHHHHHHHhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 001810 264 KEEDGLLLAAENDIKECQANLANCETELRRLQSKKEELQKEVDRLNEVAEKAQMNALKAEEDVANIMLLAEQAVAFEIEA 343 (1010)
Q Consensus 264 ~~~~~~~~~a~~~~~~~~~~l~~~~~~l~~~~~~~~~lq~~~~~l~~~~~~a~~~a~~a~~~~~~~m~~ae~av~~e~ea 343 (1010)
+++++.=-.-||-|+..|+-+..-+.++.++|...++||.... |++|-.|.++-+..-+|... -+.|=+.|=+-
T Consensus 512 ~~Kee~Ek~~~E~I~k~~ae~~rq~~~~~~sr~~~~~le~~~~-----a~qat~d~a~~Dlqk~nrlk-Qdear~~~~~l 585 (961)
T KOG4673|consen 512 RDKEETEKLLQETIEKHQAELTRQKDYYSNSRALAAALEAQAL-----AEQATNDEARSDLQKENRLK-QDEARERESML 585 (961)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH-----HHHHhhhhhhhhHHHHhhhh-hhHHHHHHHHH
Confidence 4455555566777888888888888888888888888876543 33444444444333344332 23444555555
Q ss_pred hhhcccHHHHHHHHHHhh
Q 001810 344 TQRVNDAEIALQRAEKSL 361 (1010)
Q Consensus 344 ~~~~~~~e~~l~~~~~~~ 361 (1010)
.|.|.|-..+|+|+|.++
T Consensus 586 vqqv~dLR~~L~~~Eq~a 603 (961)
T KOG4673|consen 586 VQQVEDLRQTLSKKEQQA 603 (961)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 666666666666666543
No 65
>PF06826 Asp-Al_Ex: Predicted Permease Membrane Region; InterPro: IPR006512 These sequences contain a domain that is duplicated in HI0035 of Haemophilus influenzae, in YidE and YbjL of Escherichia coli, and in a number of other putative transporters. Member proteins may have 0, 1, or 2 copies of the TrkA-C potassium uptake domain (IPR006037 from INTERPRO) between the duplications. The duplication appears distantly related to both the N- and the C-terminal domains the sodium/hydrogen exchanger family domain (IPR006153 from INTERPRO). The domain contains several apparent transmembrane regions and is proposed here to act in transport.
Probab=94.78 E-value=0.39 Score=50.16 Aligned_cols=101 Identities=16% Similarity=0.265 Sum_probs=64.9
Q ss_pred HHHHHHHHHHHhcCCC------chHHHHHHHHHhhccccc--ccccCchhHHHHHHHHHHHHHHHHhhcCChhHH---Hh
Q 001810 611 LASVIFVPIFQKIPGG------SPVLGYLAAGILIGPYGL--SIIRHVHGTKAIAEFGVVFLLFNIGLELSVERL---SS 679 (1010)
Q Consensus 611 l~A~ilg~Ll~Rl~gL------P~vVG~ILaGILLGP~gL--glI~~~~~le~LaeLGLi~LLF~aGLEidl~~L---rr 679 (1010)
+++..+|.++-|+ ++ -...|.+++|+++|...- ....+....+.+.++|+.++++.+|++--...+ ++
T Consensus 3 fl~i~lG~llG~i-~i~~~~~LG~a~G~L~vgL~~G~~~~~~~~~~~~~~~~~l~~~GL~lFl~~VGl~aG~~F~~~l~~ 81 (169)
T PF06826_consen 3 FLGIALGYLLGRI-KIPGGFSLGAAGGVLFVGLILGALGRTGPIFLPISAPSFLRQLGLALFLAAVGLSAGPGFFSSLKR 81 (169)
T ss_pred hHHHHHHHHhcce-eeccceeccccHHHHHHHHHHHHhhhccCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555666555 34 334599999999996421 011345566899999999999999999887654 44
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHhcCCChH
Q 001810 680 MKKYVFGLGSAQVLVTAVVVGLVAHFVSGLPGP 712 (1010)
Q Consensus 680 ~~k~il~LAlv~vllt~~~Vg~la~~l~Gls~~ 712 (1010)
.+.+.+.++++-.+++.++..++.++++++++.
T Consensus 82 ~G~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~ 114 (169)
T PF06826_consen 82 GGLKLLLLGVIITLVPLLIALVIGRYLFKLNPG 114 (169)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 545556666655555443333344557888754
No 66
>TIGR00844 c_cpa1 na(+)/h(+) antiporter. This model is specific for the fungal members of this family.
Probab=94.70 E-value=0.55 Score=59.24 Aligned_cols=109 Identities=16% Similarity=0.192 Sum_probs=63.9
Q ss_pred HHHHHHHhchhHHHHHHHHHHHcCCCchh---HH-H---HHHHHhHHHHHHHHHHHHhhcccChhhhhhhhhhHHHHHHH
Q 001810 835 TSLLTARAGLSMALGAFLAGLLLAETEFS---LQ-V---ESDIAPYRGLLLGLFFMTVGMSIDPKLLLSNFPVITGALGL 907 (1010)
Q Consensus 835 ~~llAe~lGlSgvLGAFiAGLiLs~~~~~---~~-L---~e~l~~i~~~f~PLFFVlIGl~Ldl~~L~~~~~~iilillv 907 (1010)
..++.+.+.++..+-.+++|++++..... .. . ...+-.+..+.+++.-...|+.++...+...|..++.+++.
T Consensus 29 s~~lkeRl~Ls~~~v~Ll~GiilGP~~l~~idP~~~g~~d~i~leIteIvL~I~LFa~Gl~L~~~~Lrr~wrsV~rLl~~ 108 (810)
T TIGR00844 29 SLFVKEKLYIGESMVASIFGLIVGPHCLNWFNPLSWGNTDSITLEISRILLCLQVFAVSVELPRKYMLKHWVSVTMLLVP 108 (810)
T ss_pred HHHHHhhcCCcHHHHHHHHHHHhhhhhhccCChhhcccchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHhHHHHHHHHHH
Confidence 34444455555555555555555542110 00 0 11111155566777777789999999988877655544444
Q ss_pred HHHHHHHHHHHHHH-h-hCCChHHHHHHHHHHhhHHHH
Q 001810 908 LIGGKTILVALVGR-L-FGVSVISAIRTGLLLAPGGEF 943 (1010)
Q Consensus 908 vil~K~l~v~l~~~-~-~gl~~real~IGl~LaprG~v 943 (1010)
....-.+.+.+.++ + .+++|..++.+|..++|-..+
T Consensus 109 ~M~lT~livAL~a~~Li~GL~~~~ALLLGAILAPTDPV 146 (810)
T TIGR00844 109 VMTSGWLVIALFVWILVPGLNFPASLLMGACITATDPV 146 (810)
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhhcCCcHH
Confidence 44444444444444 3 599999999999988876543
No 67
>TIGR00210 gltS sodium--glutamate symport carrier (gltS).
Probab=94.69 E-value=3.3 Score=48.92 Aligned_cols=154 Identities=16% Similarity=0.121 Sum_probs=102.7
Q ss_pred HHHHHHHHHHHHHHHHHh--cCCCchHHHHHHHHHhhccccc--c--cccCchhHHHHHHHHHHHHHHHHhhcCChhHHH
Q 001810 605 DVLWLLLASVIFVPIFQK--IPGGSPVLGYLAAGILIGPYGL--S--IIRHVHGTKAIAEFGVVFLLFNIGLELSVERLS 678 (1010)
Q Consensus 605 ~illLLl~A~ilg~Ll~R--l~gLP~vVG~ILaGILLGP~gL--g--lI~~~~~le~LaeLGLi~LLF~aGLEidl~~Lr 678 (1010)
.+.+.+.++.++...++. + .+|..++.+++|+++.+..- + .+. ....+.+..+.+-+++-.+=+.+++..+.
T Consensus 223 ~i~iai~iG~~i~~~l~~~~~-~lP~fv~am~~giiirni~~~~~~~~~~-~~~i~~I~~~sLdlfl~~AlmsL~L~~l~ 300 (398)
T TIGR00210 223 LIAVCLLVGYELNDLVAKTAL-MLPTFVWCLFVGVILRNPLSFKKFPWVA-ERAVSVIGNVSLSLFLAIALMSLQLWELA 300 (398)
T ss_pred HHHHHHHHHHHHHHHHHHcCC-CCCchHHHHHHHHHHHHHHHHhCccccc-hHHHHHHHHHHHHHHHHHHHHhCcHHHHH
Confidence 344444455555555554 4 68999999999999996421 1 122 23678899999999998888999999999
Q ss_pred hchhhHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHH----HHhhhcccCcHHHH--HHHHHHcCCCCChhhHHHHHHHH
Q 001810 679 SMKKYVFGLGSAQVLVTAVVVGLVAHFVSGLPGPASI----VIGNGLALSSTAVV--LQVLQERGESTSRHGRATFSVLL 752 (1010)
Q Consensus 679 r~~k~il~LAlv~vllt~~~Vg~la~~l~Gls~~~AL----LLGaILSaTSpAVv--v~IL~elg~l~s~vGrLlL~~Sl 752 (1010)
..+.+.+.+.+++++++.+..-++.+.+.|-+.-.|. ..|..+.+|.++++ -.+-++.|..++..--.=+--+.
T Consensus 301 ~~a~Plliil~~q~i~~~l~~~fv~fr~mg~~ydaaV~~ag~~G~~lGatptaianm~av~~~yg~s~~af~ivPlvgaf 380 (398)
T TIGR00210 301 DLAGPIALILLVQVMFMALYAIFVTFRLMGKDYDAAVLCAGHCGFGLGATPTAIANMQAVTERFGPSHQAFIVVPLVGAF 380 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHhccchHHHHHHhcccccccccchHHHHHHHHHHHhccCCCCcceehhhhHHHH
Confidence 9999999999999988766666667777766533333 46666666666643 34555666555443332233355
Q ss_pred hHHHHHHH
Q 001810 753 FQDLAVVV 760 (1010)
Q Consensus 753 lnDi~aIV 760 (1010)
+-|++-.+
T Consensus 381 ~id~~n~~ 388 (398)
T TIGR00210 381 FIDIINAL 388 (398)
T ss_pred HHHHhhHH
Confidence 55554433
No 68
>PF03956 DUF340: Membrane protein of unknown function (DUF340); InterPro: IPR005642 Members of this family contain a conserved core of four predicted transmembrane segments. Some members have an additional pair of N-terminal transmembrane helices. The functions of the proteins in this family are unknown.
Probab=94.56 E-value=0.36 Score=51.36 Aligned_cols=128 Identities=24% Similarity=0.380 Sum_probs=82.5
Q ss_pred HHHHHHHHhhcccccccccCchhHHHHHHHHHHHHHHHHhhcCChh-----HHHhchhhHHHHHHHHHHHHHHHHHHHHH
Q 001810 630 LGYLAAGILIGPYGLSIIRHVHGTKAIAEFGVVFLLFNIGLELSVE-----RLSSMKKYVFGLGSAQVLVTAVVVGLVAH 704 (1010)
Q Consensus 630 VG~ILaGILLGP~gLglI~~~~~le~LaeLGLi~LLF~aGLEidl~-----~Lrr~~k~il~LAlv~vllt~~~Vg~la~ 704 (1010)
++.+++|+++|-..... ....+.+.+..+.+++|..|.++-.+ .+++..++.+.+.+..++.+ ++.++++.
T Consensus 2 l~~li~Gi~lG~~~~~~---~~~~~~~~~~~L~lLLF~VGi~lG~~~~~l~~l~~~g~~~Llipl~tIlGS-llgg~l~~ 77 (191)
T PF03956_consen 2 LIALILGILLGYFLRPP---FSLIDKISTYALYLLLFLVGIDLGSNREILRQLRSLGKRALLIPLATILGS-LLGGLLAS 77 (191)
T ss_pred eeeHHHHHHHHHHhccc---ccccccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhHHHHHHHHHHHHHH-HHHHHHHH
Confidence 35678888888543222 22236678889999999999988544 45556677777777665554 45667777
Q ss_pred HhcCCChHHHHHHhhhcccCcHHHHHHHHHHcCCCCChhhHHHHHHHHhHHHHHHHHHHHH
Q 001810 705 FVSGLPGPASIVIGNGLALSSTAVVLQVLQERGESTSRHGRATFSVLLFQDLAVVVLLILI 765 (1010)
Q Consensus 705 ~l~Gls~~~ALLLGaILSaTSpAVvv~IL~elg~l~s~vGrLlL~~SllnDi~aIVLfali 765 (1010)
+++++++..++.+|+-..==|.. -.++.+.. +...|.+.+-.=++-+++++++.-++
T Consensus 78 ~ll~~~~~~~lav~sG~GwYSls--g~~i~~~~--~~~~G~iafl~n~~RE~~a~~~~P~~ 134 (191)
T PF03956_consen 78 LLLGLSLKESLAVASGFGWYSLS--GVLITQLY--GPELGTIAFLSNLFREILAIILIPLL 134 (191)
T ss_pred HHhcCCHHHHHHHHccCcHHHhH--HHHHHhhh--CHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77799999888887665422221 12334432 34667777666666667777666443
No 69
>PF05145 AmoA: Putative ammonia monooxygenase; InterPro: IPR007820 This family contains sequences annotated as ammonia monooxygenase. The AmoA gene product from Pseudomonas putida has been characterised as ammonia monooxygenase []. Ammonia monooxygenase catalyses the oxidation of NH(3) to NH(2)OH.
Probab=94.18 E-value=0.65 Score=52.99 Aligned_cols=110 Identities=13% Similarity=0.153 Sum_probs=76.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCc--hHHHHHHHHHhhcccccccccCchhHHHHHHHHHHHHHHHHhhcCChhHHHhc
Q 001810 603 LFDVLWLLLASVIFVPIFQKIPGGS--PVLGYLAAGILIGPYGLSIIRHVHGTKAIAEFGVVFLLFNIGLELSVERLSSM 680 (1010)
Q Consensus 603 Ll~illLLl~A~ilg~Ll~Rl~gLP--~vVG~ILaGILLGP~gLglI~~~~~le~LaeLGLi~LLF~aGLEidl~~Lrr~ 680 (1010)
...+.+++.++.+.+++++|+ |+| .++|-++++.++.-.+.... .....+..++.+++-...|..++...++..
T Consensus 154 ~~~l~~l~~~~~~g~~l~~~l-~iPa~~llGpml~~a~~~~~~~~~~---~~P~~l~~~aqv~iG~~iG~~f~~~~l~~~ 229 (318)
T PF05145_consen 154 WLWLALLALAALAGGLLARRL-RIPAPWLLGPMLVSAILNLFGGPSF---SLPPWLVNAAQVLIGASIGSRFTRETLREL 229 (318)
T ss_pred HHHHHHHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHHHHhCCCC---CCCHHHHHHHHHHHHHHHHccccHHHHHHH
Confidence 445667777888999999999 887 46888888888875532222 223456677778888899999999998877
Q ss_pred hhhHHH--HHHHHHHHHHHHHHHHHHHhcCCChHHHHH
Q 001810 681 KKYVFG--LGSAQVLVTAVVVGLVAHFVSGLPGPASIV 716 (1010)
Q Consensus 681 ~k~il~--LAlv~vllt~~~Vg~la~~l~Gls~~~ALL 716 (1010)
++.... +..+..+...++.+++++++.|+++..+++
T Consensus 230 ~~~~~~~l~~~~~~l~~~~~~a~~l~~~~~~~~~t~~L 267 (318)
T PF05145_consen 230 RRLLPPALLSTLLLLALCALFAWLLSRLTGIDFLTALL 267 (318)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
Confidence 664332 222223333456677778888998887665
No 70
>COG2985 Predicted permease [General function prediction only]
Probab=93.98 E-value=0.49 Score=56.20 Aligned_cols=128 Identities=23% Similarity=0.341 Sum_probs=84.4
Q ss_pred HHHHHHHHHHHHHHHhcC--C--C-chHHHHHHHHHhhcccccccccCchhHHHHHHHHHHHHHHHHhhcCChhH---HH
Q 001810 607 LWLLLASVIFVPIFQKIP--G--G-SPVLGYLAAGILIGPYGLSIIRHVHGTKAIAEFGVVFLLFNIGLELSVER---LS 678 (1010)
Q Consensus 607 llLLl~A~ilg~Ll~Rl~--g--L-P~vVG~ILaGILLGP~gLglI~~~~~le~LaeLGLi~LLF~aGLEidl~~---Lr 678 (1010)
++.+++...++..+.|+. + + --..|-+++|.+++.+++.+.. +.+.+ ++|++++.|..|++--+.. ++
T Consensus 10 llaLvvvl~lgl~~gkIr~fG~gigg~l~g~L~Vgl~l~~~~~~i~~--~~l~f--~lGL~LFVy~iGl~aGP~FFss~~ 85 (544)
T COG2985 10 LLALFVVLALGLGFGKIRGFGLGIGGVLFGVLFVGLFLGQYGFTINT--DMLHF--ELGLILFVYTIGLEAGPGFFSSFR 85 (544)
T ss_pred HHHHHHHHHHHhhhceeEEeccccccchhhHhHHHHHhccccccccc--chhhh--hhhhhHhhhhhhheecccHhHHHH
Confidence 344455555666666662 1 1 1246777777788877666532 22322 8999999999999998764 45
Q ss_pred hchhhHHHHHHHHHHHHHHHHHHHHHHhcCCCh--HHHHHHhhhcccCcHHHHHHHHHHcCCC
Q 001810 679 SMKKYVFGLGSAQVLVTAVVVGLVAHFVSGLPG--PASIVIGNGLALSSTAVVLQVLQERGES 739 (1010)
Q Consensus 679 r~~k~il~LAlv~vllt~~~Vg~la~~l~Gls~--~~ALLLGaILSaTSpAVvv~IL~elg~l 739 (1010)
+.+++...++++.++ +...++++.+.+++++. ....+-|+.-+.+.-+.+..++.+.+..
T Consensus 86 ~~Gl~~~~~allivi-~~~~~a~~l~k~~~~~~~~~~Gm~sGAlTsTP~L~aa~~~L~~lg~~ 147 (544)
T COG2985 86 KSGLNLNAFALLIVI-AALLLAWVLHKLFGIDLGLIAGMFSGALTSTPGLGAAQDILRELGAP 147 (544)
T ss_pred HhhhHHHHHHHHHHH-HHHHHHHHHHhhcCCCHHHhhhhhcccccCCchhHHHHHHHHhhccc
Confidence 666666666665543 34566677788888764 5666777766666666778889988854
No 71
>TIGR00783 ccs citrate carrier protein, CCS family. These proteins are members of the Citrate:Cation Symporter (CCS) Family (TC 2.A.24). These proteins have 12 GES predicted transmembrane regions. Most members of the CCS family catalyze citrate uptake with either Na+ or H+ as the cotransported cation. However, one member is specific for L-malate and probably functions by a proton symport mechanism.
Probab=93.96 E-value=12 Score=43.40 Aligned_cols=116 Identities=16% Similarity=0.106 Sum_probs=70.8
Q ss_pred chhHHHHHHHHHHHcCCCc-hhHHHHHHHHhHH----HHHHHHHHHHhhcc-cChhhhhhhh-hhHHHHHHHHHHHHHHH
Q 001810 843 GLSMALGAFLAGLLLAETE-FSLQVESDIAPYR----GLLLGLFFMTVGMS-IDPKLLLSNF-PVITGALGLLIGGKTIL 915 (1010)
Q Consensus 843 GlSgvLGAFiAGLiLs~~~-~~~~L~e~l~~i~----~~f~PLFFVlIGl~-Ldl~~L~~~~-~~iilillvvil~K~l~ 915 (1010)
++|+..-+.+.|+++.... ..+++++....+. .-+.+..|+-+|+. +|++.+...+ +..+++++..+++=.++
T Consensus 203 ~Ih~~v~mII~~vi~k~~gllp~~i~~~a~~~~~F~~~~lt~~ll~giGla~t~l~~L~~a~t~~~vviiv~~Vlg~ii~ 282 (347)
T TIGR00783 203 GIPAYAFMILIAAALKAFGLVPKEIEEGAKMLSQFISKNLTWPLMVGVGVSYIDLDDLVAALSWQFVVICLSVVVAMILG 282 (347)
T ss_pred cCCHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccccCCHHHHHHHhchhHhhhHHHHHHHHHHH
Confidence 5678888888888887643 2344444444443 33344445555766 6888776654 44556666777777888
Q ss_pred HHHHHHhhCCChHHHHH-HHHHHhhHHHH-HHHHHHHHHhCCCCC
Q 001810 916 VALVGRLFGVSVISAIR-TGLLLAPGGEF-AFVAFGEAVNQVCFQ 958 (1010)
Q Consensus 916 v~l~~~~~gl~~real~-IGl~LaprG~v-aLVLa~iAls~GiIs 958 (1010)
.++..++.|+-+-|+.. .|+.|+.+|.. .+.+.+.+-..++++
T Consensus 283 s~lvGKllG~YPiE~aItagLC~~~~GGtGDvavLsAa~RM~Lmp 327 (347)
T TIGR00783 283 GAFLGKLMGMYPVESAITAGLCNSGMGGTGDVAVLSASNRMNLIP 327 (347)
T ss_pred HHHHHHHhCCChHHHHHHHhhhccCCCCCCceeeeehhhhccccc
Confidence 88899999986666654 45555555443 344444444444443
No 72
>PF01758 SBF: Sodium Bile acid symporter family; InterPro: IPR002657 This family of proteins are found both in prokaryotes and eukaryotes. They are related to the human bile acid:sodium symporters, which are transmembrane proteins functioning in the liver in the uptake of bile acids from portal blood plasma, a process mediated by the co-transport of Na+ []. In yeast, overexpression of the ACR3 gene confers an arsenite- but not an arsenate-resistance phenotype [].; GO: 0008508 bile acid:sodium symporter activity, 0006814 sodium ion transport, 0016020 membrane; PDB: 3ZUX_A 3ZUY_A.
Probab=93.68 E-value=2.2 Score=44.73 Aligned_cols=98 Identities=18% Similarity=0.252 Sum_probs=48.8
Q ss_pred HHHHHHHHHHhhcCChhHHHhchhhHH--HHHH-HHHHHHHHHHHHHHH-HhcCCChHHHHHHhhhcccCcHH-HHHHHH
Q 001810 659 FGVVFLLFNIGLELSVERLSSMKKYVF--GLGS-AQVLVTAVVVGLVAH-FVSGLPGPASIVIGNGLALSSTA-VVLQVL 733 (1010)
Q Consensus 659 LGLi~LLF~aGLEidl~~Lrr~~k~il--~LAl-v~vllt~~~Vg~la~-~l~Gls~~~ALLLGaILSaTSpA-Vvv~IL 733 (1010)
+.+.+++|..|+.++++++++..|+.. ..++ ..+++.+ .+++... .+++.++. +.+|.++...+|. ....+.
T Consensus 2 i~l~~~mf~~gl~~~~~~l~~~~~~p~~l~~~l~~~~~i~P-lla~~l~~~~~~~~~~--~~~Gl~l~~~~P~~~~s~~~ 78 (187)
T PF01758_consen 2 ILLFLMMFSMGLSLTFEDLRRVLRRPKLLLIGLLAQFLIMP-LLAFGLAWLLLPLSPA--LALGLLLVAACPGGPASNVF 78 (187)
T ss_dssp -HHHHHHHHHHHC--GGGGHHHHHSHHHHHHHHHHHHHHHH-HHHHHHH-HHTT--HH--HHHHHHHHHHS-B-THHHHH
T ss_pred hhhhHHHHHhhhcccHHHHHHHHhChHHHHHHHHHHHHHHH-HHHHHHHHHHhcCCHH--HHHHHHHHhcCCcHHHHHHH
Confidence 567889999999999999997665432 2333 3333333 3344433 55555543 3334444433443 334444
Q ss_pred HHcCCCCChhhHHHHHHHHhHHHHHHHHH
Q 001810 734 QERGESTSRHGRATFSVLLFQDLAVVVLL 762 (1010)
Q Consensus 734 ~elg~l~s~vGrLlL~~SllnDi~aIVLf 762 (1010)
..+...+ ..+..+...++.+.+.++.
T Consensus 79 t~l~~Gd---~~ls~~lt~istll~~~~~ 104 (187)
T PF01758_consen 79 TYLAGGD---VALSVSLTLISTLLAPFLM 104 (187)
T ss_dssp HHHTT-----HHHHHHHHHHHHHHHHHHH
T ss_pred HHHhCCC---cccccceeeHHHHHHHHHH
Confidence 4443211 2244445566666666665
No 73
>TIGR00946 2a69 he Auxin Efflux Carrier (AEC) Family.
Probab=93.60 E-value=16 Score=41.43 Aligned_cols=132 Identities=16% Similarity=0.142 Sum_probs=83.2
Q ss_pred hHHHHHHHHHHHcCCC--chhHHHHHHHHhHHHHHHHHHHHHhhcccChhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHh
Q 001810 845 SMALGAFLAGLLLAET--EFSLQVESDIAPYRGLLLGLFFMTVGMSIDPKLLLSNFPVITGALGLLIGGKTILVALVGRL 922 (1010)
Q Consensus 845 SgvLGAFiAGLiLs~~--~~~~~L~e~l~~i~~~f~PLFFVlIGl~Ldl~~L~~~~~~iilillvvil~K~l~v~l~~~~ 922 (1010)
+|.+-+.++|+++.-. +...-+.+.++.+.+...|+-.+.+|+.+....+...++.+...+++.++.-++.+++....
T Consensus 182 nP~iia~i~Gl~~~~~~i~lP~~l~~~l~~lg~~~~plaLl~lG~~l~~~~~~~~~~~~~~~~~~klil~P~i~~~~~~~ 261 (321)
T TIGR00946 182 FPPLWAPLLSVILSLVGFKMPGLILKSISILSGATTPMALFSLGLALSPRKIKLGVRDAILALIVRFLVQPAVMAGISKL 261 (321)
T ss_pred CCChHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHHHHhhChhhhccChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555566665532 23455667777788899999999999999877665555556666667777777777777777
Q ss_pred hCCChHHH--HHHHHHHhhHHHHHHHHHHHHHhCCCCChhh--HHHHHHHHHHHHHHHHHHH
Q 001810 923 FGVSVISA--IRTGLLLAPGGEFAFVAFGEAVNQVCFQPHT--VFLIPNGISIYLQLIMIFF 980 (1010)
Q Consensus 923 ~gl~~rea--l~IGl~LaprG~vaLVLa~iAls~GiIs~~~--lVvlvVVlS~IItPiL~~l 980 (1010)
.+.+.... ..+-. -.|-+....+ ++.++|.-.+.. .++...++|.++.|++..+
T Consensus 262 ~~l~~~~~~~~vl~a-a~P~a~~~~i---~A~~y~~~~~~aa~~v~~sT~ls~~tlp~~~~l 319 (321)
T TIGR00946 262 IGLRGLELSVAILQA-ALPGGAVAAV---LATEYEVDVELASTAVTLSTVLSLISLPLFIIL 319 (321)
T ss_pred hCCChHHHHHHHHHH-cCChhhHHHH---HHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77764332 22222 2344444333 445665433333 5677777788888877654
No 74
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=93.55 E-value=15 Score=48.11 Aligned_cols=33 Identities=9% Similarity=0.171 Sum_probs=16.4
Q ss_pred cHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Q 001810 150 TDELRELLMNAMKELEVAQLNSTMFEEKAQRIS 182 (1010)
Q Consensus 150 ~~~l~~~l~~a~~~le~a~~~~~~~e~~~~~~~ 182 (1010)
++.|+.-+..+.++++.++-.-...+++.+++.
T Consensus 679 ~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~ 711 (1179)
T TIGR02168 679 IEELEEKIEELEEKIAELEKALAELRKELEELE 711 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555555444444444443333
No 75
>COG3493 CitS Na+/citrate symporter [Energy production and conversion]
Probab=93.44 E-value=20 Score=42.08 Aligned_cols=158 Identities=16% Similarity=0.154 Sum_probs=84.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCC------chHHHHHHHHHhhcccccccccCchh--H------HHHHHHHHHHHHHHH
Q 001810 603 LFDVLWLLLASVIFVPIFQKIPGG------SPVLGYLAAGILIGPYGLSIIRHVHG--T------KAIAEFGVVFLLFNI 668 (1010)
Q Consensus 603 Ll~illLLl~A~ilg~Ll~Rl~gL------P~vVG~ILaGILLGP~gLglI~~~~~--l------e~LaeLGLi~LLF~a 668 (1010)
+-.++++.+++.++|.+-+|+|-+ |+++..+.+-.+.- .|++++... + .-|.++.+.-+.--.
T Consensus 48 lg~favm~vlG~llg~IG~riPI~nk~iGG~aIl~~fvaa~~v~---~~llp~~~i~avt~fm~~snFL~fyIA~LI~GS 124 (438)
T COG3493 48 LGGFAVMFVLGALLGEIGKRIPIVNKYIGGGAILALFVAAYLVF---YNLLPSNVIKAVTNFMGKSNFLDFYIAALIVGS 124 (438)
T ss_pred HHHHHHHHHHHHHHHHhcccCcchhhccCCchHHHHHHHHHHHH---hccCCHHHHHHHHHHhcCCChHHHHHHHHHHhh
Confidence 445677788999999999998633 55555554444333 244432111 1 123333344444444
Q ss_pred hhcCChhHHHhchhhHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHH----------hhhcccCcHHHHHHHHHHcCC
Q 001810 669 GLELSVERLSSMKKYVFGLGSAQVLVTAVVVGLVAHFVSGLPGPASIVI----------GNGLALSSTAVVLQVLQERGE 738 (1010)
Q Consensus 669 GLEidl~~Lrr~~k~il~LAlv~vllt~~~Vg~la~~l~Gls~~~ALLL----------GaILSaTSpAVvv~IL~elg~ 738 (1010)
=+.++.+.|-+...+.+...+++++. +.++|.+...++|+++.-.++. |+-..| ..-.++- -.+.
T Consensus 125 ILgmnRklLIk~~~~~i~~il~g~v~-A~~~g~lVG~~~G~~~~d~~m~~vlPIM~GG~GaGavP--LS~iYs~--itg~ 199 (438)
T COG3493 125 ILGMNRKLLIKSLKRYIPPILAGMVG-AAAVGILVGLLFGLSFQDTMMYVVLPIMGGGMGAGAVP--LSEIYSS--ITGG 199 (438)
T ss_pred hhhccHHHHHHHHHhhhHHHHHHHHH-HHHHHHHHHHHhCCChHHeeeeEEeeeccCCCCCCccc--HHHHHHH--HcCC
Confidence 45788888877776655555555543 3456666666777776544432 111111 1111222 2233
Q ss_pred CCChhhHHHHHHHHhHHHHHHHHHHHHHhh
Q 001810 739 STSRHGRATFSVLLFQDLAVVVLLILIPLI 768 (1010)
Q Consensus 739 l~s~vGrLlL~~SllnDi~aIVLfali~~l 768 (1010)
.....-..+.....+..+++++.-+++..+
T Consensus 200 s~~~~~s~lipal~igNvfAIi~aall~~i 229 (438)
T COG3493 200 SQEEYFSQLIPALTIGNVFAIICAALLNKI 229 (438)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445556666667777777766665444
No 76
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=93.24 E-value=4.3 Score=52.45 Aligned_cols=63 Identities=22% Similarity=0.279 Sum_probs=37.4
Q ss_pred hHHHHHhhhHHHHHHHHHhhHHHHHHH-------hhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 001810 268 GLLLAAENDIKECQANLANCETELRRL-------QSKKEELQKEVDRLNEVAEKAQMNALKAEEDVANIM 330 (1010)
Q Consensus 268 ~~~~~a~~~~~~~~~~l~~~~~~l~~~-------~~~~~~lq~~~~~l~~~~~~a~~~a~~a~~~~~~~m 330 (1010)
.|+.-|-+||+..|..|++-++|.+.- ..+..||.+.|..|.-++.+--.+|..||+.|-.+-
T Consensus 1584 ~ai~~a~~~~~~a~~~l~kv~~~t~~aE~~~~~a~q~~~eL~~~~e~lk~~~~qns~~A~~a~~~a~sa~ 1653 (1758)
T KOG0994|consen 1584 DAIQGADRDIRLAQQLLAKVQEETAAAEKLATSATQQLGELETRMEELKHKAAQNSAEAKQAEKTAGSAK 1653 (1758)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 556666666666666666666655544 445556666666666655555555555555554443
No 77
>PRK04863 mukB cell division protein MukB; Provisional
Probab=93.16 E-value=3 Score=56.55 Aligned_cols=40 Identities=18% Similarity=0.265 Sum_probs=26.1
Q ss_pred hHHHHhhhcchhhhhhHHHhhhcccCCCCCCcchhhhccc
Q 001810 451 AEVEAEKSKNVIQTKKQEMQKDLTRESSPVNAPKTLQKKS 490 (1010)
Q Consensus 451 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 490 (1010)
.|.+....++..+++|+..+....+.+.+-.++++.++..
T Consensus 639 ~~~~~~~~~~~~~~~~~~L~~~i~~l~~~~~g~~~~l~~~ 678 (1486)
T PRK04863 639 RERELTVERDELAARKQALDEEIERLSQPGGSEDPRLNAL 678 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCccHHHHHH
Confidence 3444444455567777777777777777777777766665
No 78
>PRK04972 putative transporter; Provisional
Probab=93.15 E-value=1.4 Score=54.12 Aligned_cols=100 Identities=20% Similarity=0.238 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHHHHhcC----CCchHHHHHHHHHhhcccccccccCchhHHHHHHHHHHHHHHHHhhcCChhHHH---hc
Q 001810 608 WLLLASVIFVPIFQKIP----GGSPVLGYLAAGILIGPYGLSIIRHVHGTKAIAEFGVVFLLFNIGLELSVERLS---SM 680 (1010)
Q Consensus 608 lLLl~A~ilg~Ll~Rl~----gLP~vVG~ILaGILLGP~gLglI~~~~~le~LaeLGLi~LLF~aGLEidl~~Lr---r~ 680 (1010)
+.++++..+|+++-|++ ++-...|-+++|+++|..++.. ...+.++|+.+++|.+|++.-...+. +.
T Consensus 15 ~~lf~~i~lG~~lG~i~~~~~~LG~~~g~L~vgl~~g~~~~~~------~~~~~~~gl~lF~~~vG~~~Gp~F~~~l~~~ 88 (558)
T PRK04972 15 LLLFVVLALGLCLGKLRLGSIQLGNSIGVLVVSLLLGQQHFSI------NTDALNLGFMLFIFCVGVEAGPNFFSIFFRD 88 (558)
T ss_pred HHHHHHHHHHHhhhceEEeeEecCcchHHHHHHHHHHhCCCCC------ChHHHHHHHHHHHHHHhhhhhHHHHHHHHHh
Confidence 44455555666666652 2334569999999999865442 22345899999999999999887655 43
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhcCCChHHH
Q 001810 681 KKYVFGLGSAQVLVTAVVVGLVAHFVSGLPGPAS 714 (1010)
Q Consensus 681 ~k~il~LAlv~vllt~~~Vg~la~~l~Gls~~~A 714 (1010)
+.+...++++.+++. .++++++.+++++++..+
T Consensus 89 g~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 121 (558)
T PRK04972 89 GKNYLMLALVMVGSA-LVIALGLGKLFGWDIGLT 121 (558)
T ss_pred hHHHHHHHHHHHHHH-HHHHHHHHHHhCCCHHHH
Confidence 444555555444443 445556667788876443
No 79
>TIGR03802 Asp_Ala_antiprt aspartate-alanine antiporter. All members of the seed alignment for this model are asparate-alanine anti-transporters (AspT) encoded next to the gene for aspartate 4-decarboxylase (AspD), which converts asparate to alanine, releasing CO2. The exchange of Asp for Ala is electrogenic, so the AspD/AspT system confers a proton-motive force. This transporter contains two copies of the AspT/YidE/YbjL antiporter duplication domain (TIGR01625).
Probab=92.73 E-value=1.1 Score=54.86 Aligned_cols=106 Identities=17% Similarity=0.248 Sum_probs=67.0
Q ss_pred hHHHHHHHHHhhcccc---ccc-ccCchhHHHHHHHHHHHHHHHHhhcCChhHH---HhchhhHHHHHHHHHHHHHHHHH
Q 001810 628 PVLGYLAAGILIGPYG---LSI-IRHVHGTKAIAEFGVVFLLFNIGLELSVERL---SSMKKYVFGLGSAQVLVTAVVVG 700 (1010)
Q Consensus 628 ~vVG~ILaGILLGP~g---Lgl-I~~~~~le~LaeLGLi~LLF~aGLEidl~~L---rr~~k~il~LAlv~vllt~~~Vg 700 (1010)
...|.+++|+++|..+ +-. -.+.....++.++|+.++++.+|+.--...+ ++.+...+.++++-++++.++..
T Consensus 417 ~~~g~l~~gl~~g~~~~~~~~~~~~p~~a~~~l~~~GL~lFla~vG~~aG~~f~~~l~~~G~~~~~~g~~~~~~~~~~~~ 496 (562)
T TIGR03802 417 TGGGALISGLVFGWLRSKHPTFGNIPSSASWLLKDLGLALFIAVVGLSAGPQAVTAIKEMGLTLFLLGIVVTILPLIITM 496 (562)
T ss_pred hhHHHHHHHHHHHHhcccCCcceecCHHHHHHHHHHhHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 3568999999999642 111 0133445679999999999999999887654 45555555566555555544444
Q ss_pred HHHHHhcCCChHHHHHHhhh-cccCcHHHHHHHHHH
Q 001810 701 LVAHFVSGLPGPASIVIGNG-LALSSTAVVLQVLQE 735 (1010)
Q Consensus 701 ~la~~l~Gls~~~ALLLGaI-LSaTSpAVvv~IL~e 735 (1010)
++.++++++++.. ..|++ =+.|+|+........
T Consensus 497 ~~~~~~~~~~~~~--~~G~~aG~~t~t~~l~~a~~~ 530 (562)
T TIGR03802 497 LIGKYVLKYDPAL--LLGALAGARTATPALGAVLER 530 (562)
T ss_pred HHHHHHhCCCHHH--HHHHhhccCCCcHHHHHHHHh
Confidence 4555788887653 33333 345666665555443
No 80
>TIGR03082 Gneg_AbrB_dup membrane protein AbrB duplication. The model describes a hydrophobic sequence region that is duplicated to form the AbrB protein of Escherichia coli (not to be confused with a Bacillus subtilis protein with the same gene symbol). In some species, notably the Cyanobacteria and Thermus thermophilus, proteins consist of a single copy rather than two copies. The member from Pseudomonas putida, PP_1415, was suggested to be an ammonia monooxygenase characteristic of heterotrophic nitrifiers, based on an experimental indication of such activity in the organism and a glimmer of local sequence similarity between parts of P. putida protein and an instance of the AmoA protein from Nitrosomonas europaea (PubMed:9732537); we do not believe the sequence similarity to be meaningful. The member from E. coli (b0715, ybgN) appears to be the largely uncharacterized AbrB (aidB regulator) protein of E. coli cited in Volkert, et al. (PubMed 8002588), although we did not manage to tra
Probab=92.50 E-value=4.4 Score=41.60 Aligned_cols=115 Identities=26% Similarity=0.359 Sum_probs=71.5
Q ss_pred HHHHHHHHHHHHhchh--HHHHHHHHHHHcCCCc-hhHHHHHHHHhHHHHHHHHHHHHhhcccChhhhhh---hhhhHHH
Q 001810 830 LVILGTSLLTARAGLS--MALGAFLAGLLLAETE-FSLQVESDIAPYRGLLLGLFFMTVGMSIDPKLLLS---NFPVITG 903 (1010)
Q Consensus 830 ll~f~~~llAe~lGlS--gvLGAFiAGLiLs~~~-~~~~L~e~l~~i~~~f~PLFFVlIGl~Ldl~~L~~---~~~~iil 903 (1010)
.+....+++...+|++ .++|+++++.++.-.. ....+.. .+..+-..+.=+.+|.+++...+.. .++..+.
T Consensus 5 ~~~~~~g~l~~~l~~Pa~~llG~mi~~~~~~~~~~~~~~~P~---~~~~~~qviiG~~iG~~f~~~~l~~~~~~~~~~l~ 81 (156)
T TIGR03082 5 LVGLAGGLLASLLGLPAAWLLGPLLAGAVLSLAGGLEITLPP---WLLALAQVVIGILIGSRFTREVLAELKRLWPAALL 81 (156)
T ss_pred HHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhcCCccCCCCH---HHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHH
Confidence 3444445555666664 6777777777766322 1111111 1223334445567899998766543 3455566
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHhhHHHHHHHHHHH
Q 001810 904 ALGLLIGGKTILVALVGRLFGVSVISAIRTGLLLAPGGEFAFVAFGE 950 (1010)
Q Consensus 904 illvvil~K~l~v~l~~~~~gl~~real~IGl~LaprG~vaLVLa~i 950 (1010)
.+++.++.-++..++..++.++++.+++ ++ ..|.|.-++.+...
T Consensus 82 ~~~~~l~~~~~~~~~l~~~~~~~~~ta~-La--~~PGGl~~m~~~A~ 125 (156)
T TIGR03082 82 STVLLLALSALLAWLLARLTGVDPLTAF-LA--TSPGGASEMAALAA 125 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCHHHHH-HH--hCCchHHHHHHHHH
Confidence 6666667777888888899999998875 33 58888887776553
No 81
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=92.46 E-value=10 Score=49.74 Aligned_cols=48 Identities=23% Similarity=0.299 Sum_probs=26.1
Q ss_pred hHHHHHhhhHHHHHHHHHhhHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q 001810 268 GLLLAAENDIKECQANLANCETELRRLQSKKEELQKEVDRLNEVAEKA 315 (1010)
Q Consensus 268 ~~~~~a~~~~~~~~~~l~~~~~~l~~~~~~~~~lq~~~~~l~~~~~~a 315 (1010)
..+...++++...+..+.+++.++.+++.++.++++++.++++..+..
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~~~~l 341 (1164)
T TIGR02169 294 EKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEEL 341 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555555555666666665555555555555555444433
No 82
>TIGR01625 YidE_YbjL_dupl AspT/YidE/YbjL antiporter duplication domain. This model represents a domain that is duplicated the aspartate-alanine antiporter AspT, as well as HI0035 of Haemophilus influenzae, YidE and YbjL of E. coli, and a number of other known or putative transporters. Member proteins may have 0, 1, or 2 copies of TrkA potassium uptake domain pfam02080 between the duplications. The domain contains several apparent transmembrane regions and is proposed here to act in transport.
Probab=92.30 E-value=1.8 Score=44.70 Aligned_cols=106 Identities=21% Similarity=0.260 Sum_probs=64.8
Q ss_pred HHHHHHHHHhhccccc-c---cccCchhHHHHHHHHHHHHHHHHhhcCChhHHHhchh----hHHHHHHHHHHHHHHHHH
Q 001810 629 VLGYLAAGILIGPYGL-S---IIRHVHGTKAIAEFGVVFLLFNIGLELSVERLSSMKK----YVFGLGSAQVLVTAVVVG 700 (1010)
Q Consensus 629 vVG~ILaGILLGP~gL-g---lI~~~~~le~LaeLGLi~LLF~aGLEidl~~Lrr~~k----~il~LAlv~vllt~~~Vg 700 (1010)
..|.+++|+++|.... + .--+......+.++|+.++++.+|++--...+....+ ..+.++.+-.+++.+++.
T Consensus 24 ~~G~L~vgL~~G~~~~~~p~~~~~p~~~~~~l~~~GL~lFl~~vGl~aG~~f~~~l~~~gg~~~~~~g~~v~~~~~~~~~ 103 (154)
T TIGR01625 24 AGGVLFVGLLLGHFGATGPLTWYIPFSANLFIREFGLMLFLYGVGLSAGPGFFSSLKDGGGLLRINGGALITVVPTLLVA 103 (154)
T ss_pred cHHHHHHHHHHHhccccCCcceecChhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHH
Confidence 5688999999996431 0 1113345678999999999999999988875543322 233333333344444555
Q ss_pred HHHHHhcCCChHHHHHHhhh-cccCcHHHHHHHHHHc
Q 001810 701 LVAHFVSGLPGPASIVIGNG-LALSSTAVVLQVLQER 736 (1010)
Q Consensus 701 ~la~~l~Gls~~~ALLLGaI-LSaTSpAVvv~IL~el 736 (1010)
++.++++++++.. ..|++ =+.|+++..-...+..
T Consensus 104 ~~~~~~~~~~~~~--~~G~~aGa~T~tpaL~aa~~~~ 138 (154)
T TIGR01625 104 VALIKLLRINYAL--TAGMLAGATTNTPALDAANDTL 138 (154)
T ss_pred HHHHHHhCCCHHH--HHHHHhccccChHHHHHHHHHh
Confidence 6667788887643 33333 3456666655555433
No 83
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=92.24 E-value=13 Score=50.48 Aligned_cols=123 Identities=18% Similarity=0.169 Sum_probs=60.7
Q ss_pred cccccCCCcc----ccccCCCCCccccccchhhhhccccCCCCCcHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Q 001810 110 LAFIDGNGRN----VEFSENGDGPEANSLGEEERETKEDAEPPTTDELRELLMNAMKELEVAQLNSTMFEEKAQRISEAA 185 (1010)
Q Consensus 110 ~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~a~~~le~a~~~~~~~e~~~~~~~~~a 185 (1010)
=.||+.|||+ +.+. .....+.--|..-++.. -..-+++|.+-|..-..+++...-.....++..+++..-.
T Consensus 705 ~~~v~~dG~~r~G~l~G~--~~k~~a~~IG~~aR~~~---R~~ri~el~~~IaeL~~~i~~l~~~l~~l~~r~~~L~~e~ 779 (1353)
T TIGR02680 705 HTWIDVDGRFRLGVLRGA--WAKPAAEYIGAAARERA---RLRRIAELDARLAAVDDELAELARELRALGARQRALADEL 779 (1353)
T ss_pred CeeECCCCceeeeeeecc--cCCcchhHhhHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4589999983 3322 22444444444444211 1223677777777777777776666666666655554443
Q ss_pred HhchhH--HHHHHHhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 001810 186 IALKDE--AANAWNNVNVTLDMVHEIVNEECIAKEAVHKATMALSLAEARLQVAIESLQDV 244 (1010)
Q Consensus 186 i~~~d~--~~~~~~~~~~~~~~~~~~~~~e~~a~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 244 (1010)
=++-++ ..-|+..+. ..-.+-..|.+.+..++-.+.-++.+++.|...+..+
T Consensus 780 ~~~Ps~~dL~~A~~~l~-------~A~~~~~~a~~~l~~a~~~l~~a~~~~~~a~~~l~~a 833 (1353)
T TIGR02680 780 AGAPSDRSLRAAHRRAA-------EAERQAESAERELARAARKAAAAAAAWKQARRELERD 833 (1353)
T ss_pred HhCCCchHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333332 223333333 2222223334444444444444444444444444443
No 84
>PRK04972 putative transporter; Provisional
Probab=92.16 E-value=2.7 Score=51.61 Aligned_cols=131 Identities=18% Similarity=0.222 Sum_probs=83.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCc----hHHHHHHHHHhhcccc---ccc-ccCchhHHHHHHHHHHHHHHHHhhcCCh
Q 001810 603 LFDVLWLLLASVIFVPIFQKIPGGS----PVLGYLAAGILIGPYG---LSI-IRHVHGTKAIAEFGVVFLLFNIGLELSV 674 (1010)
Q Consensus 603 Ll~illLLl~A~ilg~Ll~Rl~gLP----~vVG~ILaGILLGP~g---Lgl-I~~~~~le~LaeLGLi~LLF~aGLEidl 674 (1010)
++.+.+-++++.++|.+-=++++.| ..-|.+++|+++|... .-. --++....++.++|+.+++..+|+.--.
T Consensus 383 ~~~~~~Gi~lG~llG~i~i~~~g~~~~LG~agG~L~~gl~~g~~~~~~~~~~~~p~~a~~~l~~~GL~lFla~vGl~aG~ 462 (558)
T PRK04972 383 LLAFCAFFIIGLMIGMITFQFSNFSFGIGNAAGLLFAGIMLGFLRANHPTFGYIPQGALNMVKEFGLMVFMAGVGLSAGS 462 (558)
T ss_pred HHHHHHHHHHHHHHcceeEeeCCeeeeccccHHHHHHHHHHHhccccCCCceeeCHHHHHHHHHHhHHHHHHHHHHhhhH
Confidence 3445555566666666655554443 2458999999999521 111 0133445789999999999999998776
Q ss_pred hH---HHhchhhHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHhhh-cccCcHHHHHHHHHH
Q 001810 675 ER---LSSMKKYVFGLGSAQVLVTAVVVGLVAHFVSGLPGPASIVIGNG-LALSSTAVVLQVLQE 735 (1010)
Q Consensus 675 ~~---Lrr~~k~il~LAlv~vllt~~~Vg~la~~l~Gls~~~ALLLGaI-LSaTSpAVvv~IL~e 735 (1010)
.. +++.+...+.++++-.+++.++..++.++++++++. .++|++ =+.|+|+....+...
T Consensus 463 ~f~~~~~~~g~~~~~~g~~~t~~~~~~~~~~~~~~~k~~~~--~~~G~~aG~~t~~~~l~~~~~~ 525 (558)
T PRK04972 463 GINNGLGAVGGQMLIAGLIVSLVPVVICFLFGAYVLRMNRA--LLFGAIMGARTCAPAMEIISDT 525 (558)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHH--HHHHHHhCCCCCcHHHHHHHhh
Confidence 54 445556666676666666665566667788899876 344444 344666655544444
No 85
>TIGR03136 malonate_biotin Na+-transporting malonate decarboxylase, carboxybiotin decarboxylase subunit. Malonate decarboxylase can be a soluble enzyme, or a sodium ion-translocating with additional membrane-bound components. Members of this protein family are integral membrane proteins required to couple decarboxylation to sodium ion export. This family belongs to a broader family, TIGR01109 of sodium ion-translocating decarboxylase beta subunits.
Probab=92.09 E-value=29 Score=40.59 Aligned_cols=118 Identities=14% Similarity=0.143 Sum_probs=71.9
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHhhcccccc-----c-----cc-------------CchhHHHHHHHH
Q 001810 604 FDVLWLLLASVIFVPIFQKIPGGSPVLGYLAAGILIGPYGLS-----I-----IR-------------HVHGTKAIAEFG 660 (1010)
Q Consensus 604 l~illLLl~A~ilg~Ll~Rl~gLP~vVG~ILaGILLGP~gLg-----l-----I~-------------~~~~le~LaeLG 660 (1010)
+.-+++++++.++-++.-+-.--|-.+..|-+|+++.+..+. . +. ....+..+.++|
T Consensus 22 ~~~~vMi~ig~~LiYLai~k~~EPLLLlPigfG~il~NiP~~~~~~g~~~~~~~~~~~~~~~~~~~~~~gg~L~~~~~~g 101 (399)
T TIGR03136 22 ITRLALIIFGFFLAYLGFKRTLEPLIMVPMGLGMMAVNAGVMFLEAGVIGTLHLDPMVSDPSVLVNLMQINFLQPVYNFT 101 (399)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCccccccccccccccccccccccchhccccCCcHHHHHHHHH
Confidence 334555666666666666552347778888899999854221 0 01 012344444444
Q ss_pred H------HHHHHHHhhcCChhHHHhchhhHHHH-HHHHHHHHHHHHHHHHHHhcCCChHHHHHHhhhcccC
Q 001810 661 V------VFLLFNIGLELSVERLSSMKKYVFGL-GSAQVLVTAVVVGLVAHFVSGLPGPASIVIGNGLALS 724 (1010)
Q Consensus 661 L------i~LLF~aGLEidl~~Lrr~~k~il~L-Alv~vllt~~~Vg~la~~l~Gls~~~ALLLGaILSaT 724 (1010)
+ .++++-.|--+|+.-+..|.+..+.. +..++-+ .++++...++|++...|..+|.|=.+=
T Consensus 102 i~~gl~P~LIFlGIGAMtDFgpllanP~~~ll~gaaAQ~Gi---F~t~~~A~~lGF~~~eAAsIgIIGgAD 169 (399)
T TIGR03136 102 FSNSLVACILFFGIGAMSDISFILARPWASITVALFAEMGT---FATLVIGYYCGLTPGEAAAVGTIGGAD 169 (399)
T ss_pred HhcccHHHHHHHhccHHhcchHHHhChHHHHHHHHHHHhhH---HHHHHHHHHcCCCHHHhhHHhhcccCC
Confidence 3 23666789999999999999887764 3444321 122333445699999998888765543
No 86
>COG1346 LrgB Putative effector of murein hydrolase [Cell envelope biogenesis, outer membrane]
Probab=92.09 E-value=8.2 Score=42.30 Aligned_cols=92 Identities=15% Similarity=0.071 Sum_probs=66.8
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHhhHHHHHHHHHHHHHhCCCCChhh--HHHHHHH
Q 001810 891 PKLLLSNFPVITGALGLLIGGKTILVALVGRLFGVSVISAIRTGLLLAPGGEFAFVAFGEAVNQVCFQPHT--VFLIPNG 968 (1010)
Q Consensus 891 l~~L~~~~~~iilillvvil~K~l~v~l~~~~~gl~~real~IGl~LaprG~vaLVLa~iAls~GiIs~~~--lVvlvVV 968 (1010)
++.+..+|+.++..+++..+.-++..++..++++.+.. +-.++.||....=+...++.+.|-+++-. .++++=+
T Consensus 83 ~~~ik~~w~~I~~g~~vGs~~ai~s~~llak~~g~~~~----~~~Sl~PkSvTTpiAm~vs~~iGGip~ltav~Vi~tGi 158 (230)
T COG1346 83 RHLIKRHWKPILAGVLVGSVVAIISGVLLAKLFGLSPE----LILSLLPKSVTTPIAMEVSESIGGIPALTAVFVILTGI 158 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHH----HHHHhcccccccHHHHHHHHhcCCchHHHHHHHHHHHH
Confidence 45566678777777777777888888889999988653 23357999988888788888888877655 4455556
Q ss_pred HHHHHHHHHHHHHhhccc
Q 001810 969 ISIYLQLIMIFFFFNCGL 986 (1010)
Q Consensus 969 lS~IItPiL~~l~~~~~r 986 (1010)
+..+++|.+.++.+-+.+
T Consensus 159 ~Gavlg~~llk~~~i~~~ 176 (230)
T COG1346 159 LGAVLGPLLLKLLRIRHP 176 (230)
T ss_pred HHHHHHHHHHHHhccCcH
Confidence 666778888888654433
No 87
>PRK03818 putative transporter; Validated
Probab=92.03 E-value=3.7 Score=50.46 Aligned_cols=126 Identities=19% Similarity=0.222 Sum_probs=78.1
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCch------HHHHHHHHHhhcccccc----cccCchhHHHHHHHHHHHHHHHHhhcCCh
Q 001810 605 DVLWLLLASVIFVPIFQKIPGGSP------VLGYLAAGILIGPYGLS----IIRHVHGTKAIAEFGVVFLLFNIGLELSV 674 (1010)
Q Consensus 605 ~illLLl~A~ilg~Ll~Rl~gLP~------vVG~ILaGILLGP~gLg----lI~~~~~le~LaeLGLi~LLF~aGLEidl 674 (1010)
.+.+.++++.++|.+-=++++.|. .-|.+++|+++|..... ..-++.....+.++|+.++++.+|++--.
T Consensus 373 ~l~l~I~lg~llG~i~~~i~g~~~~~~LG~~~G~L~~gl~~g~~~~~~~~~~~~p~~a~~~l~~~GL~lFla~vGl~aG~ 452 (552)
T PRK03818 373 PVFIGIGLGVLLGSIPFFIPGFPAALKLGLAGGPLIVALILGRIGSIGKLYWFMPPSANLALRELGIVLFLAVVGLKSGG 452 (552)
T ss_pred HHHHHHHHHHhhceeeEecCCCccceeeecchHHHHHHHHHHhccCCCCceeecCHHHHHHHHHHhHHHHHHHHHhhhhH
Confidence 345566666666665555555543 35799999999964321 11234456789999999999999998887
Q ss_pred hHHHh----chhhHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHhhh-cccCcHHHHHHH
Q 001810 675 ERLSS----MKKYVFGLGSAQVLVTAVVVGLVAHFVSGLPGPASIVIGNG-LALSSTAVVLQV 732 (1010)
Q Consensus 675 ~~Lrr----~~k~il~LAlv~vllt~~~Vg~la~~l~Gls~~~ALLLGaI-LSaTSpAVvv~I 732 (1010)
..+.. .+...+.++++-.+++.++..++.++++++++. ..+|++ =+.|+|+....+
T Consensus 453 ~f~~~~~~~~G~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~--~~~G~~aG~~t~tp~l~~a 513 (552)
T PRK03818 453 DFVDTLVNGEGLSWIGYGFLITAVPLLIVGILARMLAKMNYL--TLCGMLAGSMTDPPALAFA 513 (552)
T ss_pred HHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHH--HHHHHHhccCCCcHHHHHH
Confidence 65543 344455555555555444444444778888865 334433 344666655444
No 88
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=91.91 E-value=8.4 Score=51.40 Aligned_cols=23 Identities=35% Similarity=0.560 Sum_probs=12.7
Q ss_pred ccccccccccccccc----ccccCCCc
Q 001810 42 RIVSKTRSTRNLSKS----ISYAGCSK 64 (1010)
Q Consensus 42 ~~~~~~~~~~~~~~~----~~~~~~~~ 64 (1010)
+.|-.++|.|+|+-+ +-|.|+..
T Consensus 45 ~fVLG~~s~k~lRa~~~~DlIf~g~~~ 71 (1163)
T COG1196 45 RFVLGEQSAKNLRASKMSDLIFAGSGN 71 (1163)
T ss_pred HHHhCcchhhhhhccCCcceeeCCCCC
Confidence 344556666666533 35666555
No 89
>PRK15178 Vi polysaccharide export inner membrane protein VexD; Provisional
Probab=91.80 E-value=8.6 Score=45.90 Aligned_cols=56 Identities=18% Similarity=0.165 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHhchhHHHHHHHhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 001810 176 EKAQRISEAAIALKDEAANAWNNVNVTLDMVHEIVNEECIAKEAVHKATMALSLAEARLQVAIESLQDVKQ 246 (1010)
Q Consensus 176 ~~~~~~~~~ai~~~d~~~~~~~~~~~~~~~~~~~~~~e~~a~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 246 (1010)
+.||+|++.-+ +++..-=|++| +-.+++++.-|..-+.-||.|++.|.++|.+-+.
T Consensus 215 edA~~ia~aLL---~~sE~~VN~Ls------------~rar~D~v~~Ae~ev~~Ae~rl~~Ar~aL~~fRn 270 (434)
T PRK15178 215 KQAEFFAQRIL---SFAEQHVNTVS------------ARMQKERILWLENDVKSAQENLGAARLELLKIQH 270 (434)
T ss_pred HHHHHHHHHHH---HHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56888888744 45555555555 4557788888999999999999999999988653
No 90
>PRK12460 2-keto-3-deoxygluconate permease; Provisional
Probab=91.57 E-value=1.5 Score=49.97 Aligned_cols=86 Identities=19% Similarity=0.181 Sum_probs=61.7
Q ss_pred HHHHHHHHHhhcccccccccCchhHHHHHHHHHHHHHHHHhhcCChhHHHhchhhHHHHHHHHHHHHHHHHHHHHHHhcC
Q 001810 629 VLGYLAAGILIGPYGLSIIRHVHGTKAIAEFGVVFLLFNIGLELSVERLSSMKKYVFGLGSAQVLVTAVVVGLVAHFVSG 708 (1010)
Q Consensus 629 vVG~ILaGILLGP~gLglI~~~~~le~LaeLGLi~LLF~aGLEidl~~Lrr~~k~il~LAlv~vllt~~~Vg~la~~l~G 708 (1010)
.+.-++.|+++|+...++ .+..+-=..+++.+..|..|..+++..+.+.+...+.++++.++++ +.+++++..++|
T Consensus 169 lilpILiGmilGNld~~~---~~~l~~Gi~f~I~f~~f~LG~~lnl~~I~~~G~~GIlL~v~vv~~t-~~~~~~i~rllg 244 (312)
T PRK12460 169 ALLPLVLGMILGNLDPDM---RKFLTKGGPLLIPFFAFALGAGINLSMLLQAGLAGILLGVLVTIVT-GFFNIFADRLVG 244 (312)
T ss_pred HHHHHHHHHHHhccchhh---HHHHhccceEeHHHHHHHhcCCeeHHHHHHhChHHHHHHHHHHHHH-HHHHHHHHHHhC
Confidence 556677888888742211 1222211224788889999999999999999998888888777765 455666667779
Q ss_pred CChHHHHHHh
Q 001810 709 LPGPASIVIG 718 (1010)
Q Consensus 709 ls~~~ALLLG 718 (1010)
.+...++++|
T Consensus 245 ~~~~~g~li~ 254 (312)
T PRK12460 245 GTGIAGAAAS 254 (312)
T ss_pred CChhHHHHHH
Confidence 8888888887
No 91
>TIGR00783 ccs citrate carrier protein, CCS family. These proteins are members of the Citrate:Cation Symporter (CCS) Family (TC 2.A.24). These proteins have 12 GES predicted transmembrane regions. Most members of the CCS family catalyze citrate uptake with either Na+ or H+ as the cotransported cation. However, one member is specific for L-malate and probably functions by a proton symport mechanism.
Probab=91.51 E-value=2.2 Score=49.41 Aligned_cols=103 Identities=11% Similarity=0.116 Sum_probs=68.6
Q ss_pred HHHHHHHHHhcCCCchHHHHHHHHHhhcccccccccCc------hhHHHHHHHHHHHHHHHHhhc-CChhHHHhchh-hH
Q 001810 613 SVIFVPIFQKIPGGSPVLGYLAAGILIGPYGLSIIRHV------HGTKAIAEFGVVFLLFNIGLE-LSVERLSSMKK-YV 684 (1010)
Q Consensus 613 A~ilg~Ll~Rl~gLP~vVG~ILaGILLGP~gLglI~~~------~~le~LaeLGLi~LLF~aGLE-idl~~Lrr~~k-~i 684 (1010)
-+++|.+++.+|++|+++.+++.|+++-- +|++++. ..-+++..-....+++-.|+. +|++.+..... +.
T Consensus 191 ~y~~g~l~~~~~~Ih~~v~mII~~vi~k~--~gllp~~i~~~a~~~~~F~~~~lt~~ll~giGla~t~l~~L~~a~t~~~ 268 (347)
T TIGR00783 191 LFMAGGLLKSFPGIPAYAFMILIAAALKA--FGLVPKEIEEGAKMLSQFISKNLTWPLMVGVGVSYIDLDDLVAALSWQF 268 (347)
T ss_pred HHHHHHHHHhcccCCHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccccCCHHHHHHHhchhH
Confidence 34455566677789999999999999985 4666532 122466666666777778986 89999988773 33
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHh
Q 001810 685 FGLGSAQVLVTAVVVGLVAHFVSGLPGPASIVIG 718 (1010)
Q Consensus 685 l~LAlv~vllt~~~Vg~la~~l~Gls~~~ALLLG 718 (1010)
+.+.+..+ +..++.+++..+++|+-+.++...+
T Consensus 269 vviiv~~V-lg~ii~s~lvGKllG~YPiE~aIta 301 (347)
T TIGR00783 269 VVICLSVV-VAMILGGAFLGKLMGMYPVESAITA 301 (347)
T ss_pred hhhHHHHH-HHHHHHHHHHHHHhCCChHHHHHHH
Confidence 33433333 3345566677778888665555544
No 92
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=91.47 E-value=8.9 Score=51.17 Aligned_cols=61 Identities=23% Similarity=0.335 Sum_probs=40.8
Q ss_pred hHHHHHhhhHHHHHHHHHhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 001810 268 GLLLAAENDIKECQANLANCETELRRLQSKKEELQKEVDRLNEVAEKAQMNALKAEEDVAN 328 (1010)
Q Consensus 268 ~~~~~a~~~~~~~~~~l~~~~~~l~~~~~~~~~lq~~~~~l~~~~~~a~~~a~~a~~~~~~ 328 (1010)
+....+++++..++.++.+|+.+++.++.+.+++++++..++..-.+.+......++....
T Consensus 835 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~l~~~~~~~~~l~~~l~~ 895 (1163)
T COG1196 835 EEIEELEEKLDELEEELEELEKELEELKEELEELEAEKEELEDELKELEEEKEELEEELRE 895 (1163)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444566667777777777777777777777777777777777766666555555444433
No 93
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=91.38 E-value=21 Score=44.71 Aligned_cols=55 Identities=20% Similarity=0.174 Sum_probs=45.7
Q ss_pred CCCcchhhHHHHHhhhHHHHHHHHHhhHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q 001810 261 SDGKEEDGLLLAAENDIKECQANLANCETELRRLQSKKEELQKEVDRLNEVAEKA 315 (1010)
Q Consensus 261 ~~~~~~~~~~~~a~~~~~~~~~~l~~~~~~l~~~~~~~~~lq~~~~~l~~~~~~a 315 (1010)
++..+-.+.+..++.++.+|++.+.+++.++.+++.+++++++++.++.+.-++.
T Consensus 421 e~i~~l~e~l~~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 475 (650)
T TIGR03185 421 EQIAQLLEELGEAQNELFRSEAEIEELLRQLETLKEAIEALRKTLDEKTKQKINA 475 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3566667888889999999999999999999999999999999998876665543
No 94
>PF03956 DUF340: Membrane protein of unknown function (DUF340); InterPro: IPR005642 Members of this family contain a conserved core of four predicted transmembrane segments. Some members have an additional pair of N-terminal transmembrane helices. The functions of the proteins in this family are unknown.
Probab=90.67 E-value=1.6 Score=46.62 Aligned_cols=77 Identities=13% Similarity=0.062 Sum_probs=55.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHhhHHHHHHHHHHHHHhCCCCChhh-HH-HHH----HHHHHH
Q 001810 899 PVITGALGLLIGGKTILVALVGRLFGVSVISAIRTGLLLAPGGEFAFVAFGEAVNQVCFQPHT-VF-LIP----NGISIY 972 (1010)
Q Consensus 899 ~~iilillvvil~K~l~v~l~~~~~gl~~real~IGl~LaprG~vaLVLa~iAls~GiIs~~~-lV-vlv----VVlS~I 972 (1010)
+..+.+.+..+++-+++.++..++.++++++++.++.+++.-..-+..+... .+++. .+ +++ =+++.+
T Consensus 56 ~~~Llipl~tIlGSllgg~l~~~ll~~~~~~~lav~sG~GwYSlsg~~i~~~------~~~~~G~iafl~n~~RE~~a~~ 129 (191)
T PF03956_consen 56 KRALLIPLATILGSLLGGLLASLLLGLSLKESLAVASGFGWYSLSGVLITQL------YGPELGTIAFLSNLFREILAII 129 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHccCcHHHhHHHHHHhh------hCHHHHHHHHHHHHHHHHHHHH
Confidence 4456667777888999999999999999999999999998887776666431 23333 11 111 145667
Q ss_pred HHHHHHHHH
Q 001810 973 LQLIMIFFF 981 (1010)
Q Consensus 973 ItPiL~~l~ 981 (1010)
+.|++.|+.
T Consensus 130 ~~P~~~r~~ 138 (191)
T PF03956_consen 130 LIPLLARYF 138 (191)
T ss_pred HHHHHHHhc
Confidence 788888843
No 95
>TIGR01109 Na_pump_decarbB sodium ion-translocating decarboxylase, beta subunit. This model describes the beta subunits of sodium pump decarboxylases that include oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, and glutaconyl-CoA decarboxylase. Beta and gammma-subunits are integral membrane proteins, while alpha is membrane bound. Catalytically, the energy released by the decarboxylation reaction is coupled to the extrusion of Na+ ions across the membrane.
Probab=89.97 E-value=43 Score=38.74 Aligned_cols=111 Identities=14% Similarity=0.137 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHHHhcCCCchHHHHHHHHHhhccc---ccccccCchhHHHHHHHHH------HHHHHHHhhcCChhHHHh
Q 001810 609 LLLASVIFVPIFQKIPGGSPVLGYLAAGILIGPY---GLSIIRHVHGTKAIAEFGV------VFLLFNIGLELSVERLSS 679 (1010)
Q Consensus 609 LLl~A~ilg~Ll~Rl~gLP~vVG~ILaGILLGP~---gLglI~~~~~le~LaeLGL------i~LLF~aGLEidl~~Lrr 679 (1010)
+++++.++-++.-+-.--|-.+..+-+|+++.+. +++.+.....++.+.++|+ .++++-.|--+|+.-+..
T Consensus 5 Mi~ig~~LiYLai~k~~EPlLLiPigfG~il~NiP~~~~g~~~~gg~l~~~~~~gi~~~l~P~LIFlGIGAmtDFgplla 84 (354)
T TIGR01109 5 MLLVSLLLLYLAIAKKFEPLLLIPIGFGGILSNIPEAGLGLTAEGGILALFYKVGIGSGIAPLLIFMGIGALTDFGPLLA 84 (354)
T ss_pred hHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCccccccccCCchHHHHHHHHHhcchHHHHHHHhccHHhhhHHHHh
Confidence 3444555555555542347778888899999853 2233333334444444442 346667899999999999
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHhcCC------ChHHHHHHhhhcc
Q 001810 680 MKKYVFGLGSAQVLVTAVVVGLVAHFVSGL------PGPASIVIGNGLA 722 (1010)
Q Consensus 680 ~~k~il~LAlv~vllt~~~Vg~la~~l~Gl------s~~~ALLLGaILS 722 (1010)
|.+..+.-+..++-+ .++++...++|+ +...|..+|.+=.
T Consensus 85 nP~~~llGaaAQ~Gi---F~t~~~A~~lGf~~~~~~~~~eAAsIgIIGg 130 (354)
T TIGR01109 85 NPRTLLLGAAAQFGI---FATVFGALTLNFFGIISFSLPQAAAIGIIGG 130 (354)
T ss_pred ChHHHHHHHHHHhhH---HHHHHHHHHhCCCcccccChhhceeeeeecc
Confidence 997655444444421 122233334466 5567766665544
No 96
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=89.85 E-value=24 Score=39.17 Aligned_cols=103 Identities=22% Similarity=0.222 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhchhHHH-------HHHHhhhHhHHHHHHHHHHHH-----------
Q 001810 153 LRELLMNAMKELEVAQLNSTMFEEKAQRISEAAIALKDEAA-------NAWNNVNVTLDMVHEIVNEEC----------- 214 (1010)
Q Consensus 153 l~~~l~~a~~~le~a~~~~~~~e~~~~~~~~~ai~~~d~~~-------~~~~~~~~~~~~~~~~~~~e~----------- 214 (1010)
-+..++...++++.-.---.-+.+|++++++.+-.+++.+. .--.+|....+.|++++++=.
T Consensus 43 ~~~~~~~~e~~l~~L~~d~~~L~~k~~~~~~~~~~l~~~t~~t~~~a~~L~~~i~~l~~~i~~l~~~~~~l~~~~~~~~~ 122 (264)
T PF06008_consen 43 QKQQLDPLEKELESLEQDVENLQEKATKVSRKAQQLNNNTERTLQRAQDLEQFIQNLQDNIQELIEQVESLNENGDQLPS 122 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccCCCCH
Confidence 33333333333333333333445555555555555555444 444445556666666554321
Q ss_pred -HHHHHHHHHHHHH------------HHHHHHHHHHHHHhhhhccCCCCCCCCc
Q 001810 215 -IAKEAVHKATMAL------------SLAEARLQVAIESLQDVKQEDDYPEGST 255 (1010)
Q Consensus 215 -~a~~~~~~~~~~~------------~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (1010)
.-.++...|.++| ..|+..+.-|.+-|...+....+|...+
T Consensus 123 ~~l~~~l~ea~~mL~emr~r~f~~~~~~Ae~El~~A~~LL~~v~~~~~~~~~~~ 176 (264)
T PF06008_consen 123 EDLQRALAEAQRMLEEMRKRDFTPQRQNAEDELKEAEDLLSRVQKWFQKPQQEN 176 (264)
T ss_pred HHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHhhHHHhh
Confidence 1122333344333 3466666666666666555555555444
No 97
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=89.57 E-value=19 Score=39.39 Aligned_cols=168 Identities=20% Similarity=0.224 Sum_probs=89.9
Q ss_pred cHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhchhHHHHHHHhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001810 150 TDELRELLMNAMKELEVAQLNSTMFEEKAQRISEAAIALKDEAANAWNNVNVTLDMVHEIVNEECIAKEAVHKATMALSL 229 (1010)
Q Consensus 150 ~~~l~~~l~~a~~~le~a~~~~~~~e~~~~~~~~~ai~~~d~~~~~~~~~~~~~~~~~~~~~~e~~a~~~~~~~~~~~~~ 229 (1010)
++....=|..+.+.++...--...+|.+.+...+..-.|.++...|....+.+-....++..+=.+...-...+--.+..
T Consensus 59 L~~~~~kL~~~e~~~de~er~~k~lE~r~~~~eeri~~lE~~l~ea~~~~ee~e~k~~E~~rkl~~~E~~Le~aEeR~e~ 138 (237)
T PF00261_consen 59 LEEATEKLEEAEKRADESERARKVLENREQSDEERIEELEQQLKEAKRRAEEAERKYEEVERKLKVLEQELERAEERAEA 138 (237)
T ss_dssp CCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 55556666666677776666667777777777777777777776666666655544444444433443444444444444
Q ss_pred HHHHHHHHHHHhhhhccCCCCCCCCcccccCCCCcchhhHHHHHhhhHHHHHHHHHhhHHHHHHHhhhHHHHHHHHHHHH
Q 001810 230 AEARLQVAIESLQDVKQEDDYPEGSTEDDAKSDGKEEDGLLLAAENDIKECQANLANCETELRRLQSKKEELQKEVDRLN 309 (1010)
Q Consensus 230 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~l~~~~~~l~~~~~~~~~lq~~~~~l~ 309 (1010)
+|.+...-.+-+..+......++.+.+ +-.+-...-.+.|+..+..|.+-|.+......+...||+++++|.
T Consensus 139 ~E~ki~eLE~el~~~~~~lk~lE~~~~--------~~~~re~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le 210 (237)
T PF00261_consen 139 AESKIKELEEELKSVGNNLKSLEASEE--------KASEREDEYEEKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLE 210 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hchhHHHHHHHHHHHHHHHHHhhhhhh--------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444333222222222110 001122334445666666666666666666666666666666666
Q ss_pred HHHHHHHHHHhhhHHH
Q 001810 310 EVAEKAQMNALKAEED 325 (1010)
Q Consensus 310 ~~~~~a~~~a~~a~~~ 325 (1010)
+-..+.+..-.+...+
T Consensus 211 ~eL~~~k~~~~~~~~e 226 (237)
T PF00261_consen 211 DELEKEKEKYKKVQEE 226 (237)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6555555544444433
No 98
>PF05982 DUF897: Domain of unknown function (DUF897) ; InterPro: IPR010293 This is a family of bacterial proteins with unknown function
Probab=89.24 E-value=48 Score=38.33 Aligned_cols=130 Identities=21% Similarity=0.286 Sum_probs=62.9
Q ss_pred HHHHHHHHHhhcccccccccCchhHHHHHHHHHHHHHHHHh----hcCChhHHHhchhhHHHHHHHHHHHHHHHHHHHHH
Q 001810 629 VLGYLAAGILIGPYGLSIIRHVHGTKAIAEFGVVFLLFNIG----LELSVERLSSMKKYVFGLGSAQVLVTAVVVGLVAH 704 (1010)
Q Consensus 629 vVG~ILaGILLGP~gLglI~~~~~le~LaeLGLi~LLF~aG----LEidl~~Lrr~~k~il~LAlv~vllt~~~Vg~la~ 704 (1010)
++.+.+.|++.+-..-+ .+..+-+.++.-+++|+.+| .++.-..+.......+..-..+++++ +....+..
T Consensus 2 ~vLFF~LG~~A~~~kSd----L~iP~~i~k~lsiyLLlaIGlkGG~~l~~~~~~~~~~~~~~~~~lg~liP-l~~~~iLr 76 (327)
T PF05982_consen 2 VVLFFILGIIAALLKSD----LEIPEAIYKFLSIYLLLAIGLKGGVELAHSGLTALLLPLLAAVLLGILIP-LIAFPILR 76 (327)
T ss_pred chHHHHHHHHHHHHcCC----CcCChhHHHHHHHHHHHHHhcccHHHHHcCCHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 45566667766632211 12223344444445555555 45544444332222222222222222 12222233
Q ss_pred HhcCCChHHHHHHhhhc---ccCcHHHHHHHHHHcCCCCChhhHHHHHHHHhHHHHHHHHHHHH
Q 001810 705 FVSGLPGPASIVIGNGL---ALSSTAVVLQVLQERGESTSRHGRATFSVLLFQDLAVVVLLILI 765 (1010)
Q Consensus 705 ~l~Gls~~~ALLLGaIL---SaTSpAVvv~IL~elg~l~s~vGrLlL~~SllnDi~aIVLfali 765 (1010)
++.+++...+..+++-. |+...++++..++..+.. -.|.+..-.++++--..++.+.+.
T Consensus 77 ~~~~l~~~daaAiAAhYGSVSavTF~~a~~~L~~~gi~--yeg~m~a~~alME~PAIival~L~ 138 (327)
T PF05982_consen 77 RLGKLDRADAAAIAAHYGSVSAVTFAAALAFLESQGIS--YEGYMVALLALMESPAIIVALLLA 138 (327)
T ss_pred HccCCChhhHHHHHHHcCchHHHHHHHHHHHHHHCCCC--ccccHHHHHHHHhhhHHHHHHHHH
Confidence 34577766666655543 334456788899998863 344555555666654444444443
No 99
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=89.24 E-value=7.9 Score=43.53 Aligned_cols=154 Identities=18% Similarity=0.285 Sum_probs=79.5
Q ss_pred cHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhchhHHHHHHHhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001810 150 TDELRELLMNAMKELEVAQLNSTMFEEKAQRISEAAIALKDEAANAWNNVNVTLDMVHEIVNEECIAKEAVHKATMALSL 229 (1010)
Q Consensus 150 ~~~l~~~l~~a~~~le~a~~~~~~~e~~~~~~~~~ai~~~d~~~~~~~~~~~~~~~~~~~~~~e~~a~~~~~~~~~~~~~ 229 (1010)
...+..-+.+.+++++.+++.++-+|.+.+..-+--=+++..-..--.++.+ .|+.-+..|..+ .....++-.|
T Consensus 98 ~~~le~el~~lrk~ld~~~~~r~~le~~i~~L~eEl~fl~~~heeEi~~L~~---~~~~~~~~e~~~---~~~~dL~~~L 171 (312)
T PF00038_consen 98 RKDLEEELESLRKDLDEETLARVDLENQIQSLKEELEFLKQNHEEEIEELRE---QIQSSVTVEVDQ---FRSSDLSAAL 171 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTST---T-------------------HHHHH
T ss_pred HHHHHHHHhhhhhhhhhhhhhHhHHHHHHHHHHHHHHHHHhhhhhhhhhhhh---ccccccceeecc---cccccchhhh
Confidence 3445556677788888888888888888887766554544433221111111 111111111111 1122233333
Q ss_pred HHHHHHHHHHHhhhhccCCCCCCCCcccccCCCCcchhhHHHHHhhhHHHHHHHHHhhHHHHHHHhhhHHHHHHHHHHHH
Q 001810 230 AEARLQVAIESLQDVKQEDDYPEGSTEDDAKSDGKEEDGLLLAAENDIKECQANLANCETELRRLQSKKEELQKEVDRLN 309 (1010)
Q Consensus 230 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~l~~~~~~l~~~~~~~~~lq~~~~~l~ 309 (1010)
.+.|-|-...+-....+....++.-. .+-..-......++..+++|+++++..+.....+|..++.++..|.+.+..+.
T Consensus 172 ~eiR~~ye~~~~~~~~e~e~~y~~k~-~~l~~~~~~~~~~~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le 250 (312)
T PF00038_consen 172 REIRAQYEEIAQKNREELEEWYQSKL-EELRQQSEKSSEELESAKEELKELRRQIQSLQAELESLRAKNASLERQLRELE 250 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHhhhhhhhhhhccccc-ccccccccccccccchhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHH
Confidence 33333322111111000000000000 00000112245788899999999999999999999999999999999998775
Q ss_pred H
Q 001810 310 E 310 (1010)
Q Consensus 310 ~ 310 (1010)
.
T Consensus 251 ~ 251 (312)
T PF00038_consen 251 Q 251 (312)
T ss_dssp H
T ss_pred H
Confidence 3
No 100
>PF03977 OAD_beta: Na+-transporting oxaloacetate decarboxylase beta subunit; InterPro: IPR005661 Members of this family are integral membrane proteins. The decarboxylation reactions they catalyse are coupled to the vectorial transport of Na+ across the cytoplasmic membrane, thereby creating a sodium ion motive force that is used for ATP synthesis [].; GO: 0016829 lyase activity, 0006814 sodium ion transport
Probab=89.24 E-value=49 Score=38.41 Aligned_cols=114 Identities=17% Similarity=0.214 Sum_probs=71.0
Q ss_pred HHHHHHHHHHHHHHHhcCCCchHHHHHHHHHhhcccccc-ccc------CchhHHHHHHHHH------HHHHHHHhhcCC
Q 001810 607 LWLLLASVIFVPIFQKIPGGSPVLGYLAAGILIGPYGLS-IIR------HVHGTKAIAEFGV------VFLLFNIGLELS 673 (1010)
Q Consensus 607 llLLl~A~ilg~Ll~Rl~gLP~vVG~ILaGILLGP~gLg-lI~------~~~~le~LaeLGL------i~LLF~aGLEid 673 (1010)
+++++++.++-++.-|-.--|-.+..|-+|+++.+.... ... ....+..+.++|+ .++++-.|--+|
T Consensus 5 ~vMi~vg~~liYLai~k~~EPlLLlPigfG~il~N~P~~~~~~~~~~~~~~g~l~~~~~~gi~~~l~P~LIF~GIGAmtD 84 (360)
T PF03977_consen 5 IVMILVGFLLIYLAIKKKYEPLLLLPIGFGMILVNIPLSGLMDQPVGGGEIGGLQPIYYFGISNGLFPPLIFMGIGAMTD 84 (360)
T ss_pred HHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHhcCchhhcccccccCCCChHHHHHHHhhhcchhhHHHHHHHhHHHh
Confidence 345555666666666652347778889999999853222 111 1233444444442 346677899999
Q ss_pred hhHHHhchhhHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHhhhccc
Q 001810 674 VERLSSMKKYVFGLGSAQVLVTAVVVGLVAHFVSGLPGPASIVIGNGLAL 723 (1010)
Q Consensus 674 l~~Lrr~~k~il~LAlv~vllt~~~Vg~la~~l~Gls~~~ALLLGaILSa 723 (1010)
+.-+..|.+..+.=+..++- +.++++...++|++...|..+|.+=.+
T Consensus 85 FgpllanP~~~llGaaAQ~G---if~t~~~A~~lGf~~~eAAsIgIIGgA 131 (360)
T PF03977_consen 85 FGPLLANPKTLLLGAAAQFG---IFATFLGAILLGFTPKEAASIGIIGGA 131 (360)
T ss_pred hHHHHhCHHHHHHHHHHHHh---HHHHHHHHHHhCCCHHHhhHhhhcccC
Confidence 99999999885544444432 123344455669999999988876554
No 101
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=89.14 E-value=65 Score=44.04 Aligned_cols=38 Identities=16% Similarity=0.278 Sum_probs=22.2
Q ss_pred HHHHHhhhHHHHHHHHHhhHHHHHHHhhhHHHHHHHHH
Q 001810 269 LLLAAENDIKECQANLANCETELRRLQSKKEELQKEVD 306 (1010)
Q Consensus 269 ~~~~a~~~~~~~~~~l~~~~~~l~~~~~~~~~lq~~~~ 306 (1010)
.+...++++.+++..+.+-+.++.+...++.++.+++.
T Consensus 348 ~a~~~~~~~~~a~~~~e~~~~~~~~~~~r~~~~~~~l~ 385 (1353)
T TIGR02680 348 AAADARQAIREAESRLEEERRRLDEEAGRLDDAERELR 385 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555666666666666666666666666655543
No 102
>COG5374 Uncharacterized conserved protein [Function unknown]
Probab=88.68 E-value=0.85 Score=47.79 Aligned_cols=51 Identities=35% Similarity=0.446 Sum_probs=43.0
Q ss_pred hhhHHHHHHHHHhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 001810 274 ENDIKECQANLANCETELRRLQSKKEELQKEVDRLNEVAEKAQMNALKAEE 324 (1010)
Q Consensus 274 ~~~~~~~~~~l~~~~~~l~~~~~~~~~lq~~~~~l~~~~~~a~~~a~~a~~ 324 (1010)
+.|+-+.++.+..-...|+.+|.+++++-|+-|+.||+++.+|+.+.|-+|
T Consensus 142 eA~~t~lk~~~~~~~~~le~Lqkn~~~~~k~~d~~ne~~~~v~~e~skkk~ 192 (192)
T COG5374 142 EADSTDLKARLRKAQILLEGLQKNQEELFKLLDKYNELREQVQKESSKKKE 192 (192)
T ss_pred hcchHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhcCC
Confidence 345566667777777889999999999999999999999999999887653
No 103
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=88.65 E-value=34 Score=41.91 Aligned_cols=56 Identities=29% Similarity=0.348 Sum_probs=26.9
Q ss_pred HHHHhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhh
Q 001810 282 ANLANCETELRRLQSKKEELQKEVDRLNEVAEKAQMNALKAEEDVANIMLLAEQAVAFEIEATQ 345 (1010)
Q Consensus 282 ~~l~~~~~~l~~~~~~~~~lq~~~~~l~~~~~~a~~~a~~a~~~~~~~m~~ae~av~~e~ea~~ 345 (1010)
..|...-.|.+......+..|.|+.++.+-++.++....-+|... +|+-.|+||++
T Consensus 372 ~~Lqql~~Eae~Ak~ea~~~~~E~~~~k~E~e~~ka~i~t~E~rL--------~aa~ke~eaaK 427 (522)
T PF05701_consen 372 KALQQLSSEAEEAKKEAEEAKEEVEKAKEEAEQTKAAIKTAEERL--------EAALKEAEAAK 427 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHH
Confidence 334444444444444444444555555544444444444444443 34566666654
No 104
>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea. Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane
Probab=87.82 E-value=58 Score=37.49 Aligned_cols=130 Identities=15% Similarity=0.022 Sum_probs=73.2
Q ss_pred hHHHHHHHHHHHcCCCc------hhHHHHHHHHhHHHHHHHHHHHHhhcccChhhhhh--hhhhHHHHHHHHHHHHHHHH
Q 001810 845 SMALGAFLAGLLLAETE------FSLQVESDIAPYRGLLLGLFFMTVGMSIDPKLLLS--NFPVITGALGLLIGGKTILV 916 (1010)
Q Consensus 845 SgvLGAFiAGLiLs~~~------~~~~L~e~l~~i~~~f~PLFFVlIGl~Ldl~~L~~--~~~~iilillvvil~K~l~v 916 (1010)
++.+=+.+.|++++-.+ ...-+.+.++.+.....|+-.+.+|+.+....... .+......+++.++.-++.+
T Consensus 244 nP~~~a~~lgli~~~~~~~~~~~~~~~i~~~~~~lg~~~~pl~l~~lG~~l~~~~~~~~~~~~~~~~~~~~rlii~P~i~ 323 (385)
T PF03547_consen 244 NPPLIAIILGLIIGLIPPLRPLFFPSFITDSLSYLGAAAVPLALFVLGASLARGPRKSALGWKPSIIAVLVRLIILPLIG 323 (385)
T ss_pred CcHHHHHHHHHHHHHHHHhcccchHhHHHHHHHHHHhhhHHHHHHHHHHHHhcCCcccchhhHHHHHHHHHHHHHHHHHH
Confidence 56666666777766432 12556677777788889999999999886543221 23333344666666677777
Q ss_pred HHHHHhhCCChHHHHHHH-HHHhhHHHHHHHHHHHHHhCCCCChhh--HHHHHHHHHHHHHHHH
Q 001810 917 ALVGRLFGVSVISAIRTG-LLLAPGGEFAFVAFGEAVNQVCFQPHT--VFLIPNGISIYLQLIM 977 (1010)
Q Consensus 917 ~l~~~~~gl~~real~IG-l~LaprG~vaLVLa~iAls~GiIs~~~--lVvlvVVlS~IItPiL 977 (1010)
+...+..+++......+- ..-.|-+....+ ++..++.-.+.. .++...+++.++.|++
T Consensus 324 ~~~~~~~~l~~~~~~~~~~~~~~P~a~~~~~---~a~~~~~~~~~~s~~~~~~~~~~~~~~~~~ 384 (385)
T PF03547_consen 324 IGIVFLLGLDGDMARVLILQAAMPTAINSFV---IASLYGLDEEEASSIVFWSTLLSIPTLPLW 384 (385)
T ss_pred HHHHHHHCCCHHHHHHHHHhccCCchHHHHH---HHHHhCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777776544322111 123444443333 344455433333 4444555555555543
No 105
>PF03616 Glt_symporter: Sodium/glutamate symporter; InterPro: IPR004445 This is a family of sodium/glutamate symporters (glutamate permeases), which catalyse the sodium-dependent uptake of extracellular glutamate. The protein is located in the inner membrane.; GO: 0015501 glutamate:sodium symporter activity, 0015813 L-glutamate transport, 0016021 integral to membrane
Probab=87.41 E-value=9.9 Score=44.46 Aligned_cols=122 Identities=16% Similarity=0.123 Sum_probs=82.2
Q ss_pred HHHHHHHHHHHHHHHh-cCCCchHHHHHHHHHhhcccc--cccc-cCchhHHHHHHHHHHHHHHHHhhcCChhHHHhchh
Q 001810 607 LWLLLASVIFVPIFQK-IPGGSPVLGYLAAGILIGPYG--LSII-RHVHGTKAIAEFGVVFLLFNIGLELSVERLSSMKK 682 (1010)
Q Consensus 607 llLLl~A~ilg~Ll~R-l~gLP~vVG~ILaGILLGP~g--LglI-~~~~~le~LaeLGLi~LLF~aGLEidl~~Lrr~~k 682 (1010)
.+.+.++..+..+++. ...+|..++.+++|+++.... .+.. -+....+.+..+.+-+++..+=..+++..+.....
T Consensus 227 ~i~~~~G~~i~~~l~~~~~~lP~f~~ami~g~ivrn~~~~~~~~~id~~~i~~I~~~sL~~fl~~almsl~l~~l~~~a~ 306 (368)
T PF03616_consen 227 LIAIGLGYIISALLKKIGLTLPLFVGAMIVGIIVRNILDKTGKYKIDRKTIDRISGISLDLFLAMALMSLKLWVLADYAL 306 (368)
T ss_pred HHHHHHHHHHHHHHHHcCcCCchHHHHHHHHHHHHHHHHHhCcccCCHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 3333444444444443 227899999999999998642 1211 24556789999999999999889999999999988
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHH----HHhhhcccCcHHH
Q 001810 683 YVFGLGSAQVLVTAVVVGLVAHFVSGLPGPASI----VIGNGLALSSTAV 728 (1010)
Q Consensus 683 ~il~LAlv~vllt~~~Vg~la~~l~Gls~~~AL----LLGaILSaTSpAV 728 (1010)
+.+.+-+++++++.+.+-++.+.++|-++-.+. ..|..+.+|..++
T Consensus 307 Plliil~~q~i~~~~f~~fv~fr~~gkdydaavm~~G~~G~glGatp~a~ 356 (368)
T PF03616_consen 307 PLLIILAVQTILMVLFAYFVTFRVMGKDYDAAVMSAGFCGFGLGATPNAM 356 (368)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhCCChhHHHHhhhhhccCCCccHHHH
Confidence 888877788777665555556667777664333 3444445554443
No 106
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=87.35 E-value=84 Score=42.45 Aligned_cols=59 Identities=15% Similarity=0.317 Sum_probs=33.8
Q ss_pred hhhHHHHHHHHHhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 001810 274 ENDIKECQANLANCETELRRLQSKKEELQKEVDRLNEVAEKAQMNALKAEEDVANIMLL 332 (1010)
Q Consensus 274 ~~~~~~~~~~l~~~~~~l~~~~~~~~~lq~~~~~l~~~~~~a~~~a~~a~~~~~~~m~~ 332 (1010)
++.+..++..+..|+++.+.++......+++++.+++...+++..-.+++.++.+.-.-
T Consensus 606 ~~~l~~~~~~l~~~~~~~~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 664 (1201)
T PF12128_consen 606 RERLEQAEDQLQSAEERQEELEKQLKQINKKIEELKREITQAEQELKQAEQDLQRLKNE 664 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 34455555555555555555555555555666666665566666666666666555443
No 107
>PRK04288 antiholin-like protein LrgB; Provisional
Probab=86.92 E-value=53 Score=36.37 Aligned_cols=90 Identities=13% Similarity=0.069 Sum_probs=60.2
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHhhHHHHHHHHHHHHHhCCCCChhh--HHHHHHH
Q 001810 891 PKLLLSNFPVITGALGLLIGGKTILVALVGRLFGVSVISAIRTGLLLAPGGEFAFVAFGEAVNQVCFQPHT--VFLIPNG 968 (1010)
Q Consensus 891 l~~L~~~~~~iilillvvil~K~l~v~l~~~~~gl~~real~IGl~LaprG~vaLVLa~iAls~GiIs~~~--lVvlvVV 968 (1010)
.+.+..+|+.++..+++..+.-++..+..++++|.+. .+-.+|.||....=+...++.+.|-+++-. .++..=+
T Consensus 86 ~~~lk~~~~~Il~~~~vG~~~~i~s~~~la~~lgl~~----~~~~Sl~pKSVTtPIAm~is~~iGG~psLtA~~ViitGi 161 (232)
T PRK04288 86 RDVLKKYWWQILGGIVVGSVCSVLIIYLVAKLIQLDN----AVMASMLPQAATTAIALPVSAGIGGIKEITSFAVIFNAV 161 (232)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcCH----HHHHHHhhHhhhHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 4555556666666666666677777888888888865 234457999888877777777877655443 3334445
Q ss_pred HHHHHHHHHHHHHhhc
Q 001810 969 ISIYLQLIMIFFFFNC 984 (1010)
Q Consensus 969 lS~IItPiL~~l~~~~ 984 (1010)
+-.+++|.++++.+-+
T Consensus 162 ~Gai~g~~llk~~~I~ 177 (232)
T PRK04288 162 IIYALGAKFLKLFRIK 177 (232)
T ss_pred HHHHHHHHHHHHcCCC
Confidence 5556778888876554
No 108
>PF05276 SH3BP5: SH3 domain-binding protein 5 (SH3BP5); InterPro: IPR007940 The SH3 domain-binding protein inhibits the auto and transphophorylation of BTK and acts as a negative regulator of BTK-related signalling in B cells.
Probab=86.86 E-value=8.9 Score=42.41 Aligned_cols=156 Identities=17% Similarity=0.147 Sum_probs=94.0
Q ss_pred cHHHHHHHHHHHHHHHHHhhh-hhHHHHHHHHHHHHHHhchhHHHHHHHhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001810 150 TDELRELLMNAMKELEVAQLN-STMFEEKAQRISEAAIALKDEAANAWNNVNVTLDMVHEIVNEECIAKEAVHKATMALS 228 (1010)
Q Consensus 150 ~~~l~~~l~~a~~~le~a~~~-~~~~e~~~~~~~~~ai~~~d~~~~~~~~~~~~~~~~~~~~~~e~~a~~~~~~~~~~~~ 228 (1010)
|-.--+-+.+-.++|+.||-. +...-+-.+++.+.+=-|-.-...|+-=.+ ....-.+.-.+=-.|....++|.-+..
T Consensus 16 LN~atd~IN~lE~~L~~ar~~fr~~l~e~~~kL~~~~kkLg~~I~karPYye-a~~~a~~aq~e~q~Aa~~yerA~~~h~ 94 (239)
T PF05276_consen 16 LNQATDEINRLENELDEARATFRRLLSESTKKLNELAKKLGSCIEKARPYYE-ARRKAKEAQQEAQKAALQYERANSMHA 94 (239)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344566777788888876 445555556666655555444443332222 000111111111234555556666666
Q ss_pred HHHHHHHHHHHHhhhhccCCCCCCCCcccccCCCCcchhhHHHHHhhhHHHHHHHHHhhHHHHHHHhhhHHHHHHHHHHH
Q 001810 229 LAEARLQVAIESLQDVKQEDDYPEGSTEDDAKSDGKEEDGLLLAAENDIKECQANLANCETELRRLQSKKEELQKEVDRL 308 (1010)
Q Consensus 229 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~l~~~~~~l~~~~~~~~~lq~~~~~l 308 (1010)
.|+..+.+|.+++.... + -+-...-.|.|--|-..+.+.+..-..+|.+-++...+-.++.++|-.|
T Consensus 95 aAKe~v~laEq~l~~~~-------~------~~~D~~wqEmLn~A~~kVneAE~ek~~ae~eH~~~~~~~~~ae~~v~~L 161 (239)
T PF05276_consen 95 AAKEMVALAEQSLMSDS-------N------WTFDPAWQEMLNHATQKVNEAEQEKTRAEREHQRRARIYNEAEQRVQQL 161 (239)
T ss_pred HHHHHHHHHHHHHhcCC-------c------ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666665511 0 0112235688999999999999999999999998888888888888888
Q ss_pred HHHHHHHHHHH
Q 001810 309 NEVAEKAQMNA 319 (1010)
Q Consensus 309 ~~~~~~a~~~a 319 (1010)
...-.++=.++
T Consensus 162 ek~lkr~I~KS 172 (239)
T PF05276_consen 162 EKKLKRAIKKS 172 (239)
T ss_pred HHHHHHHHHhh
Confidence 87666554443
No 109
>PF03390 2HCT: 2-hydroxycarboxylate transporter family; InterPro: IPR004679 The 2-hydroxycarboxylate transporter family is a family of secondary transporters found exclusively in the bacterial kingdom. They function in the metabolism of the di- and tricarboxylates malate and citrate, mostly in fermentative pathways involving decarboxylation of malate or oxaloacetate []. The majority of proteins in this entry are known or predicted members of the citrate:cation symporter (CCS) family. They contain the predicted twelve-transmembrane helix motif common to many secondary transporters []. Most of the characterised proteins in this entry are specific for citrate, with either Na+ of H+ as the contransported cation. However, one member is capable of cotransporting either citrate or malate with H+ [], while another has been shown to be an Na+-dependent malate cotransporter [].; GO: 0008514 organic anion transmembrane transporter activity, 0015711 organic anion transport, 0016021 integral to membrane
Probab=86.82 E-value=77 Score=37.89 Aligned_cols=162 Identities=12% Similarity=0.093 Sum_probs=86.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCC------CchHHHHHHHHHhhcccccccccCchhHH---------HHHHHHHHHHHH
Q 001810 602 SLFDVLWLLLASVIFVPIFQKIPG------GSPVLGYLAAGILIGPYGLSIIRHVHGTK---------AIAEFGVVFLLF 666 (1010)
Q Consensus 602 ~Ll~illLLl~A~ilg~Ll~Rl~g------LP~vVG~ILaGILLGP~gLglI~~~~~le---------~LaeLGLi~LLF 666 (1010)
.+-.++++.+++.+++++-+|+|- -|.++..+....+.- .|++++. ..+ -|.++.+..+.-
T Consensus 30 m~g~~a~~~v~G~~l~~IG~riPi~k~yiGGg~il~~f~ps~Lv~---~~~ip~~-~~~~v~~fm~~~~Fl~ffIa~LI~ 105 (414)
T PF03390_consen 30 MIGGFAVMMVLGFLLGEIGDRIPILKDYIGGGAILCIFVPSALVY---FGLIPES-VVEAVTNFMKGSNFLYFFIAALIV 105 (414)
T ss_pred hHHHHHHHHHHHHHHHHHHhhChhhhccCChHHHHHHHHHHHHHH---cCCCCHH-HHHHHHHHhccCChHHHHHHHHHH
Confidence 356678888999999999998751 122222222222222 3455432 221 122333333333
Q ss_pred HHhhcCChhHHHhchhhHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHhh-hccc-----CcHHHHHHHHHHcCCCC
Q 001810 667 NIGLELSVERLSSMKKYVFGLGSAQVLVTAVVVGLVAHFVSGLPGPASIVIGN-GLAL-----SSTAVVLQVLQERGEST 740 (1010)
Q Consensus 667 ~aGLEidl~~Lrr~~k~il~LAlv~vllt~~~Vg~la~~l~Gls~~~ALLLGa-ILSa-----TSpAVvv~IL~elg~l~ 740 (1010)
-.=+.+|.+.|.|...+.+...+++++. .++++.+...++|+++..+++.=+ -+.. -..+...-.-+-++...
T Consensus 106 GSILgm~RklLika~~r~~p~il~g~~~-a~~~g~lvG~l~G~~~~~~i~~i~lPIMgGG~GaGavPLS~~Ya~~~g~~~ 184 (414)
T PF03390_consen 106 GSILGMNRKLLIKAFARFIPPILGGVIG-AFLLGGLVGMLFGYSFKDAIFYIVLPIMGGGMGAGAVPLSQIYAEALGQDA 184 (414)
T ss_pred hhhhhcCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhCCCHHHHHHHHHhhhcCCCccccHhHHHHHHHHHhCCCH
Confidence 3445899999998887777666666654 345666677788888776665421 1111 00111111112223333
Q ss_pred ChhhHHHHHHHHhHHHHHHHHHHHHHhh
Q 001810 741 SRHGRATFSVLLFQDLAVVVLLILIPLI 768 (1010)
Q Consensus 741 s~vGrLlL~~SllnDi~aIVLfali~~l 768 (1010)
...-..++...++..++++++-.++.-+
T Consensus 185 ~~~~s~~ipa~~lgNi~AIi~aglL~~l 212 (414)
T PF03390_consen 185 EEYFSQLIPALTLGNIFAIIFAGLLNKL 212 (414)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455556667777777666555333
No 110
>PF03390 2HCT: 2-hydroxycarboxylate transporter family; InterPro: IPR004679 The 2-hydroxycarboxylate transporter family is a family of secondary transporters found exclusively in the bacterial kingdom. They function in the metabolism of the di- and tricarboxylates malate and citrate, mostly in fermentative pathways involving decarboxylation of malate or oxaloacetate []. The majority of proteins in this entry are known or predicted members of the citrate:cation symporter (CCS) family. They contain the predicted twelve-transmembrane helix motif common to many secondary transporters []. Most of the characterised proteins in this entry are specific for citrate, with either Na+ of H+ as the contransported cation. However, one member is capable of cotransporting either citrate or malate with H+ [], while another has been shown to be an Na+-dependent malate cotransporter [].; GO: 0008514 organic anion transmembrane transporter activity, 0015711 organic anion transport, 0016021 integral to membrane
Probab=86.69 E-value=13 Score=44.08 Aligned_cols=111 Identities=14% Similarity=0.094 Sum_probs=79.5
Q ss_pred HHHHHHHHHHHHHHHhcCCCchHHHHHHHHHhhcccccccccCc------hhHHHHHHHHHHHHHHHHhhc-CChhHHHh
Q 001810 607 LWLLLASVIFVPIFQKIPGGSPVLGYLAAGILIGPYGLSIIRHV------HGTKAIAEFGVVFLLFNIGLE-LSVERLSS 679 (1010)
Q Consensus 607 llLLl~A~ilg~Ll~Rl~gLP~vVG~ILaGILLGP~gLglI~~~------~~le~LaeLGLi~LLF~aGLE-idl~~Lrr 679 (1010)
+++-+.-+++|.+++++.++|++..+++.=+++-- +|++++. .+.+++..-....+|+-.|.. +||+.+.+
T Consensus 252 llla~~~y~~G~ll~~~i~ih~~a~mIi~~~i~K~--~~lvP~~~e~~a~~~~~f~~~~lt~~lLvgiGv~~~~l~~l~~ 329 (414)
T PF03390_consen 252 LLLACSFYILGVLLSKLIGIHAYAWMIILVAIVKA--FGLVPESLEEGAKQWYKFFSKNLTWPLLVGIGVAYTDLNDLIA 329 (414)
T ss_pred HHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHH--hCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCcHHHHHH
Confidence 34444456677888887799999999988887774 4566532 345788888888999999998 99999988
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHhh
Q 001810 680 MKKYVFGLGSAQVLVTAVVVGLVAHFVSGLPGPASIVIGN 719 (1010)
Q Consensus 680 ~~k~il~LAlv~vllt~~~Vg~la~~l~Gls~~~ALLLGa 719 (1010)
.......+.++.+++...+.+++..+++|+-+.++-..+.
T Consensus 330 a~t~~~vv~~~~~Vl~~~~~a~~vG~l~g~YPvEsAItaG 369 (414)
T PF03390_consen 330 AFTPQYVVIVLATVLGAVIGAFLVGKLVGFYPVESAITAG 369 (414)
T ss_pred HhCHHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHhh
Confidence 7766555555555555556667777788886655555444
No 111
>PRK09903 putative transporter YfdV; Provisional
Probab=86.54 E-value=64 Score=36.62 Aligned_cols=132 Identities=10% Similarity=0.003 Sum_probs=77.2
Q ss_pred hHHHHHHHHHHHcCC--CchhHHHHHHHHhHHHHHHHHHHHHhhcccChhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHh
Q 001810 845 SMALGAFLAGLLLAE--TEFSLQVESDIAPYRGLLLGLFFMTVGMSIDPKLLLSNFPVITGALGLLIGGKTILVALVGRL 922 (1010)
Q Consensus 845 SgvLGAFiAGLiLs~--~~~~~~L~e~l~~i~~~f~PLFFVlIGl~Ldl~~L~~~~~~iilillvvil~K~l~v~l~~~~ 922 (1010)
+|.+-+.++|+++.- .+.-.-+.+.++.+.+...|+-.+.+|+++....+...+ ......++..+.-++.++.....
T Consensus 173 nP~iia~~~gl~~~l~~i~lP~~i~~~l~~lg~~~~PlaL~~iG~~L~~~~~~~~~-~~~~~~~~Kli~~P~i~~~~~~~ 251 (314)
T PRK09903 173 EPVVWAPVLATILVLVGVKIPAAWDPTFNLIAKANSGVAVFAAGLTLAAHKFEFSA-EIAYNTFLKLILMPLALLLVGMA 251 (314)
T ss_pred chHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555566665442 334456777778888899999999999988654432222 22333445555556666666666
Q ss_pred hCCChHHHHHHHHH--HhhHHHHHHHHHHHHHhCCCCChhh--HHHHHHHHHHHHHHHHHHHH
Q 001810 923 FGVSVISAIRTGLL--LAPGGEFAFVAFGEAVNQVCFQPHT--VFLIPNGISIYLQLIMIFFF 981 (1010)
Q Consensus 923 ~gl~~real~IGl~--LaprG~vaLVLa~iAls~GiIs~~~--lVvlvVVlS~IItPiL~~l~ 981 (1010)
.+++.... .+.+. -.|-+....++ +.+.|.-++.. .+...+++|.++.|++..+.
T Consensus 252 ~~l~~~~~-~v~vl~aa~P~a~~~~i~---A~~y~~~~~~aa~~v~~sTlls~iTlpl~~~l~ 310 (314)
T PRK09903 252 CHLNSEHL-QMMVLAGALPPAFSGIII---ASRFNVYTRTGTASLAVSVLGFVVTAPLWIYVS 310 (314)
T ss_pred cCCCcHHH-HHHHHHHcccHHHHHHHH---HHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67754332 22221 34554444444 45555433332 45666777878888887763
No 112
>COG3180 AbrB Putative ammonia monooxygenase [General function prediction only]
Probab=86.52 E-value=7.6 Score=45.11 Aligned_cols=107 Identities=15% Similarity=0.165 Sum_probs=70.0
Q ss_pred HHHHHHHHHHHHHHHHhcCCCch--HHHHHHHHHhhcccccccccCchhHHHHHHHHHHHHHHHHhhcCChhHHHhchhh
Q 001810 606 VLWLLLASVIFVPIFQKIPGGSP--VLGYLAAGILIGPYGLSIIRHVHGTKAIAEFGVVFLLFNIGLELSVERLSSMKKY 683 (1010)
Q Consensus 606 illLLl~A~ilg~Ll~Rl~gLP~--vVG~ILaGILLGP~gLglI~~~~~le~LaeLGLi~LLF~aGLEidl~~Lrr~~k~ 683 (1010)
+++++.++.+.+.+.+++ |+|. ..+-++.|+++.-.+ ++ ..+....+..++-.++--..|.++|...+++..|.
T Consensus 190 ~~~l~~~~~~~g~l~~~l-r~Pa~~ll~~l~l~a~v~~~~-~~--~~~lP~wl~~va~~~iG~~IG~~f~~~~l~~~~r~ 265 (352)
T COG3180 190 LLLLILAALLGGLLGKLL-RFPAPTLLGPLLLGAIVHFGG-GI--TIQLPAWLLAVAQALIGALIGSRFDRSILREAKRL 265 (352)
T ss_pred HHHHHHHHHHHHHHHHHH-cCCcHHHHHHHHHHHHhhccc-ce--eeeCCHHHHHHHHHHHHHHHcccccHHHHHHhHhh
Confidence 556666677777777777 8875 456666666665433 11 22233445567777888899999999988876664
Q ss_pred H--HHHHHHHHHHHHHHHHHHHHHhcCCChHHHHH
Q 001810 684 V--FGLGSAQVLVTAVVVGLVAHFVSGLPGPASIV 716 (1010)
Q Consensus 684 i--l~LAlv~vllt~~~Vg~la~~l~Gls~~~ALL 716 (1010)
. ..+.++..++....++++.+++.+.++..+++
T Consensus 266 ~~~~~v~ii~l~~~~~~~a~ll~~~~~i~~~ta~L 300 (352)
T COG3180 266 LPAILVSIIALMAIAAGMAGLLSWLTGIDLNTAYL 300 (352)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH
Confidence 3 23333333434456677778888999987765
No 113
>PHA02562 46 endonuclease subunit; Provisional
Probab=86.01 E-value=91 Score=37.92 Aligned_cols=29 Identities=10% Similarity=0.142 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 001810 217 KEAVHKATMALSLAEARLQVAIESLQDVK 245 (1010)
Q Consensus 217 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 245 (1010)
.++++++......++..+..........+
T Consensus 254 ~~~L~~l~~~~~~~~~~l~~~~~~~~~~~ 282 (562)
T PHA02562 254 SAALNKLNTAAAKIKSKIEQFQKVIKMYE 282 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 35566777777777777776666666554
No 114
>TIGR00808 malonate_madM malonate transporter, MadM subunit. The MSS family includes the monobasic malonate:Na+ symporter of Malonomonas rubra. It consists of two integral membrane proteins, MadL and MadM.The transporter is believed to catalyze the electroneutral reversible uptake of H+-malonate with one Na+, and both subunits have been shown to be essential for activity.
Probab=85.88 E-value=9.4 Score=41.21 Aligned_cols=107 Identities=10% Similarity=0.129 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcC--CCchHHHHHHHHHhhccccccccc----CchhHHHHHHHHHH-------HHHHHH
Q 001810 602 SLFDVLWLLLASVIFVPIFQKIP--GGSPVLGYLAAGILIGPYGLSIIR----HVHGTKAIAEFGVV-------FLLFNI 668 (1010)
Q Consensus 602 ~Ll~illLLl~A~ilg~Ll~Rl~--gLP~vVG~ILaGILLGP~gLglI~----~~~~le~LaeLGLi-------~LLF~a 668 (1010)
++..+.++=+.-++..++.+|++ |++.----|+.|+++...+ |... ....+..++.+|+. |-.-.-
T Consensus 14 Li~aFa~vG~~m~~s~~lS~~lT~Gr~hgSAIAI~lGL~lAy~g-G~~TgG~kGlaDi~lfsGiglmGGaMlRDfAIvaT 92 (254)
T TIGR00808 14 LITAFAVVGLMMYVSHLLSKYLTKGKLHGSAIAITMGLVLAYVG-GVYTGGEKGLADIAIFGGFGLMGGAMLRDLAIVAT 92 (254)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHc-ccccCCccccchhhhhcchhhhhhHHHHHHHHHHH
Confidence 34444444444555556666664 6777777788888887542 1111 11223333333332 123456
Q ss_pred hhcCChhHHHhchhhHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 001810 669 GLELSVERLSSMKKYVFGLGSAQVLVTAVVVGLVAHFVSGLP 710 (1010)
Q Consensus 669 GLEidl~~Lrr~~k~il~LAlv~vllt~~~Vg~la~~l~Gls 710 (1010)
+++.|.+++||.+..-..--+++++++ |++|....+.+|+.
T Consensus 93 Af~v~~~e~kkaG~~G~vsL~~G~v~~-F~~Ga~vA~afGY~ 133 (254)
T TIGR00808 93 AFEVDVKEVKKAGKVGMVALLLGCVIP-FVIGAMVAWAFGYR 133 (254)
T ss_pred hhcCcHHHHHHcchHHHHHHHHHHHHH-HHHHHHHHHHHcCC
Confidence 789999999998876555555566554 67788777888874
No 115
>TIGR00946 2a69 he Auxin Efflux Carrier (AEC) Family.
Probab=85.20 E-value=18 Score=41.03 Aligned_cols=115 Identities=17% Similarity=0.172 Sum_probs=69.5
Q ss_pred HHHhcCCCchHHHHHHHHHhhccccccccc-CchhHHHHHHHHHHHHHHHHhhcCChhHHHhchhhHHHHHHHHHHHHHH
Q 001810 619 IFQKIPGGSPVLGYLAAGILIGPYGLSIIR-HVHGTKAIAEFGVVFLLFNIGLELSVERLSSMKKYVFGLGSAQVLVTAV 697 (1010)
Q Consensus 619 Ll~Rl~gLP~vVG~ILaGILLGP~gLglI~-~~~~le~LaeLGLi~LLF~aGLEidl~~Lrr~~k~il~LAlv~vllt~~ 697 (1010)
.++|+.+-|.+++ .++|+++...++.+-. -.+.++.++....++-||..|+.++.+.+++.++......++=.++.++
T Consensus 175 ~~~~~~~nP~iia-~i~Gl~~~~~~i~lP~~l~~~l~~lg~~~~plaLl~lG~~l~~~~~~~~~~~~~~~~~~klil~P~ 253 (321)
T TIGR00946 175 VWKKLIKFPPLWA-PLLSVILSLVGFKMPGLILKSISILSGATTPMALFSLGLALSPRKIKLGVRDAILALIVRFLVQPA 253 (321)
T ss_pred HHHHHHhCCChHH-HHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHHHHhhChhhhccChHHHHHHHHHHHHHHHH
Confidence 3444435565554 5667777754443211 1245688999999999999999999988877766666555555544443
Q ss_pred HHHHHHHHhcCCChHHHHHHhhhcccCcHHHHHHHHHHc
Q 001810 698 VVGLVAHFVSGLPGPASIVIGNGLALSSTAVVLQVLQER 736 (1010)
Q Consensus 698 ~Vg~la~~l~Gls~~~ALLLGaILSaTSpAVvv~IL~el 736 (1010)
+ .+.+..+++++... .-...+.++..+++...++.+.
T Consensus 254 i-~~~~~~~~~l~~~~-~~~~vl~aa~P~a~~~~i~A~~ 290 (321)
T TIGR00946 254 V-MAGISKLIGLRGLE-LSVAILQAALPGGAVAAVLATE 290 (321)
T ss_pred H-HHHHHHHhCCChHH-HHHHHHHHcCChhhHHHHHHHH
Confidence 3 34444556665432 2333455555566666666543
No 116
>COG2431 Predicted membrane protein [Function unknown]
Probab=85.12 E-value=4 Score=45.75 Aligned_cols=88 Identities=24% Similarity=0.414 Sum_probs=55.9
Q ss_pred hHHHHHHHHHhhcccccccccCchhHHHHHHHHHHHHHHHHhhcCC---hh--HHHhchhhHHHHHHHHHHHHHHHHHHH
Q 001810 628 PVLGYLAAGILIGPYGLSIIRHVHGTKAIAEFGVVFLLFNIGLELS---VE--RLSSMKKYVFGLGSAQVLVTAVVVGLV 702 (1010)
Q Consensus 628 ~vVG~ILaGILLGP~gLglI~~~~~le~LaeLGLi~LLF~aGLEid---l~--~Lrr~~k~il~LAlv~vllt~~~Vg~l 702 (1010)
.+.++++.|+++|-..-...+ ..+...+..+.+++|.+|.++. .. ...=| |+.+.+++..+ ++..+.|.+
T Consensus 108 k~~~~vl~g~~~G~l~~~~~~---~~~~a~~~~L~~LlF~iGi~l~n~g~~~~~~~Ln-k~gl~l~~i~i-lssliGG~i 182 (297)
T COG2431 108 KLLGVVLLGLALGLLTGSFLN---FPENASEYLLYLLLFLIGIQLGNSGISLRQVLLN-KRGLILAFITL-LSSLIGGLI 182 (297)
T ss_pred HHHHHHHHHHHHHHHhccccc---CchhHHHHHHHHHHHHHHHHhccccchhhhHHhc-cchHHHHHHHH-HHHHHHHHH
Confidence 356677777777754333322 2456678899999999999887 22 22222 44455555443 345566777
Q ss_pred HHHhcCCChHHHHHHhhh
Q 001810 703 AHFVSGLPGPASIVIGNG 720 (1010)
Q Consensus 703 a~~l~Gls~~~ALLLGaI 720 (1010)
+.+++++|+.+++.+++.
T Consensus 183 aa~~l~lpl~~~lAmasG 200 (297)
T COG2431 183 AAFLLDLPLTTGLAMASG 200 (297)
T ss_pred HHHHHhccHHHHHHHHhc
Confidence 788889988887776543
No 117
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=84.97 E-value=60 Score=39.85 Aligned_cols=52 Identities=23% Similarity=0.385 Sum_probs=42.0
Q ss_pred chhhHHHHHhhhHHHHHHHHHhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 001810 265 EEDGLLLAAENDIKECQANLANCETELRRLQSKKEELQKEVDRLNEVAEKAQ 316 (1010)
Q Consensus 265 ~~~~~~~~a~~~~~~~~~~l~~~~~~l~~~~~~~~~lq~~~~~l~~~~~~a~ 316 (1010)
.-...+.++..|..+.+.+|.+..+|+..++...+.|+.|+.+...--.+.+
T Consensus 278 ~~~~~l~s~~~ELe~ak~~L~~~k~E~~~L~~~vesL~~ELe~~K~el~~lk 329 (522)
T PF05701_consen 278 ELQSSLASAKKELEEAKKELEKAKEEASSLRASVESLRSELEKEKEELERLK 329 (522)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3446689999999999999999999999999999999888877655444433
No 118
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=84.96 E-value=24 Score=46.34 Aligned_cols=41 Identities=17% Similarity=0.235 Sum_probs=24.2
Q ss_pred HHHhhcCChhHHHhchhhHHHHHHHHHHHHHHHHHHHHHHh
Q 001810 666 FNIGLELSVERLSSMKKYVFGLGSAQVLVTAVVVGLVAHFV 706 (1010)
Q Consensus 666 F~aGLEidl~~Lrr~~k~il~LAlv~vllt~~~Vg~la~~l 706 (1010)
|.-|.-++.+--++.|+.|.-|+-+-=.++.+++-|++|.|
T Consensus 1175 FseGV~FSVrPpKKSWK~I~NLSGGEKTLSSLALVFALH~Y 1215 (1293)
T KOG0996|consen 1175 FSEGVMFSVRPPKKSWKNISNLSGGEKTLSSLALVFALHHY 1215 (1293)
T ss_pred cccCceEEeeCchhhhhhcccCCcchhHHHHHHHHHHHHcc
Confidence 34566677777778888776554433333444444555655
No 119
>PF13514 AAA_27: AAA domain
Probab=84.80 E-value=73 Score=42.61 Aligned_cols=27 Identities=19% Similarity=0.322 Sum_probs=19.7
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHH
Q 001810 158 MNAMKELEVAQLNSTMFEEKAQRISEA 184 (1010)
Q Consensus 158 ~~a~~~le~a~~~~~~~e~~~~~~~~~ 184 (1010)
++..++++..+-.-..|+++++.+.+.
T Consensus 746 ~~~~~ri~~~~~~~~~f~~~~~~L~~~ 772 (1111)
T PF13514_consen 746 RELRRRIEQMEADLAAFEEQVAALAER 772 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344466777777888899998888764
No 120
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=84.70 E-value=48 Score=35.64 Aligned_cols=47 Identities=23% Similarity=0.215 Sum_probs=38.7
Q ss_pred cHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhchhHHHHHH
Q 001810 150 TDELRELLMNAMKELEVAQLNSTMFEEKAQRISEAAIALKDEAANAW 196 (1010)
Q Consensus 150 ~~~l~~~l~~a~~~le~a~~~~~~~e~~~~~~~~~ai~~~d~~~~~~ 196 (1010)
+.++.+.|.++++.+..+..+..++|.+..+.-+.+--+++.|..|-
T Consensus 32 ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~~A~~Al 78 (221)
T PF04012_consen 32 IRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAEKWEKQAELAL 78 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66788888899999988899999999888888888777777776664
No 121
>COG0025 NhaP NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism]
Probab=84.56 E-value=13 Score=44.20 Aligned_cols=71 Identities=20% Similarity=0.294 Sum_probs=47.8
Q ss_pred HHHHHHHHHHhhcccChhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhh--CCChHHHHHHHHHHhhHHHHHH
Q 001810 875 GLLLGLFFMTVGMSIDPKLLLSNFPVITGALGLLIGGKTILVALVGRLF--GVSVISAIRTGLLLAPGGEFAF 945 (1010)
Q Consensus 875 ~~f~PLFFVlIGl~Ldl~~L~~~~~~iilillvvil~K~l~v~l~~~~~--gl~~real~IGl~LaprG~vaL 945 (1010)
.++.|+.-..-|+++|...+..+|..+..+....++.-.+++....++. ++++..++.+|..++|-..+++
T Consensus 64 ~l~l~ilLf~~g~~l~~~~l~~~~~~I~~La~~~v~it~~~~g~~~~~l~~~i~~~~a~l~gAilspTDPv~v 136 (429)
T COG0025 64 VLFLAILLFAGGLELDLRELRRVWRSILVLALPLVLITALGIGLLAHWLLPGIPLAAAFLLGAILSPTDPVAV 136 (429)
T ss_pred HHHHHHHHHHhHhcCCHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhHHHHHHHhHHhcCCCchhh
Confidence 5555665556699999999988776665555555555555544444444 7888888888888776655543
No 122
>KOG1650 consensus Predicted K+/H+-antiporter [Inorganic ion transport and metabolism]
Probab=84.09 E-value=7.3 Score=49.74 Aligned_cols=105 Identities=12% Similarity=0.090 Sum_probs=67.9
Q ss_pred HHHHHHHHHHHHHHhhcCChhHHHhchhhHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHhhhcccCcHH--HHHHH
Q 001810 655 AIAEFGVVFLLFNIGLELSVERLSSMKKYVFGLGSAQVLVTAVVVGLVAHFVSGLPGPASIVIGNGLALSSTA--VVLQV 732 (1010)
Q Consensus 655 ~LaeLGLi~LLF~aGLEidl~~Lrr~~k~il~LAlv~vllt~~~Vg~la~~l~Gls~~~ALLLGaILSaTSpA--Vvv~I 732 (1010)
+...+.+++.....|++.|...+.+ +...... +..+.+.-++.+....++.++|+..++.+|.+++.=... +++.+
T Consensus 310 ~~~~~llPl~~~~~G~k~di~~i~~-~~~~~~~-i~~~~~~K~l~t~~~sl~~k~p~~~~l~l~~lm~~kgl~el~~~~~ 387 (769)
T KOG1650|consen 310 LVSGLLLPLYFAISGLKTDISRINK-WGALIRT-ILIFGAVKLLSTLGTSLYCKLPLRDSLALGLLMSTKGLVELIVLNT 387 (769)
T ss_pred HHHHHHHHHHHHhhccceeHHHHHH-HHHHHHH-HHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHhhhHHHHHHHHH
Confidence 3446677778888999999999988 3222221 222222233444455567899999999999998866554 55666
Q ss_pred HHHcCCCCChhhHHHHHHHHhHHHHHHHH
Q 001810 733 LQERGESTSRHGRATFSVLLFQDLAVVVL 761 (1010)
Q Consensus 733 L~elg~l~s~vGrLlL~~SllnDi~aIVL 761 (1010)
-.+.+..+.+...+..-.++++=.+.-.+
T Consensus 388 ~~~~~~~~~~~f~~~vl~alv~t~I~~~~ 416 (769)
T KOG1650|consen 388 GLDRKILSDEGFTVMVLMALVSTFITPPL 416 (769)
T ss_pred HhhcCCcccchHHHHHHHHHHHHhhHHHH
Confidence 67888777776666655565555444333
No 123
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=83.78 E-value=77 Score=35.20 Aligned_cols=19 Identities=26% Similarity=0.428 Sum_probs=9.4
Q ss_pred HhhhHHHHHHHHHhhHHHH
Q 001810 273 AENDIKECQANLANCETEL 291 (1010)
Q Consensus 273 a~~~~~~~~~~l~~~~~~l 291 (1010)
|..|.++|+..|......+
T Consensus 151 Ae~El~~A~~LL~~v~~~~ 169 (264)
T PF06008_consen 151 AEDELKEAEDLLSRVQKWF 169 (264)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444555555555544444
No 124
>COG5420 Uncharacterized conserved small protein containing a coiled-coil domain [Function unknown]
Probab=83.74 E-value=3.2 Score=36.69 Aligned_cols=52 Identities=37% Similarity=0.441 Sum_probs=39.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHh-hhH---HHHHHHHHHHHHHHH--HHHHHhhh
Q 001810 295 QSKKEELQKEVDRLNEVAEKAQMNAL-KAE---EDVANIMLLAEQAVA--FEIEATQR 346 (1010)
Q Consensus 295 ~~~~~~lq~~~~~l~~~~~~a~~~a~-~a~---~~~~~~m~~ae~av~--~e~ea~~~ 346 (1010)
-+..+|+||+|.|||-.|..|.|+-- .|| -+-..||-.||.+.+ .||.+++|
T Consensus 5 ms~l~eiqkKvrkLqsrAg~akm~LhDLAEgLP~~wtei~~VA~kt~~~yaeLD~~k~ 62 (71)
T COG5420 5 MSSLEEIQKKVRKLQSRAGQAKMELHDLAEGLPVKWTEIMAVAEKTFEAYAELDAAKR 62 (71)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHhhHHHHhccCCccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35678999999999999999999854 344 356889999998754 46666554
No 125
>PRK10698 phage shock protein PspA; Provisional
Probab=83.62 E-value=58 Score=35.62 Aligned_cols=30 Identities=10% Similarity=0.191 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Q 001810 151 DELRELLMNAMKELEVAQLNSTMFEEKAQR 180 (1010)
Q Consensus 151 ~~l~~~l~~a~~~le~a~~~~~~~e~~~~~ 180 (1010)
.++++-|.+++..+..+......+|.+..+
T Consensus 34 ~em~~~l~~~r~alA~~~A~~k~~er~~~~ 63 (222)
T PRK10698 34 QEMEDTLVEVRSTSARALAEKKQLTRRIEQ 63 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555544444444444444444333
No 126
>PF04172 LrgB: LrgB-like family ; InterPro: IPR007300 The two products of the lrgAB operon are potential membrane proteins, and LrgA and LrgB are both thought to control murein hydrolase activity and penicillin tolerance [].
Probab=83.27 E-value=59 Score=35.54 Aligned_cols=89 Identities=19% Similarity=0.076 Sum_probs=54.0
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHhhHHHHHHHHHHHHHhCCCCChhh--HHHHHHH
Q 001810 891 PKLLLSNFPVITGALGLLIGGKTILVALVGRLFGVSVISAIRTGLLLAPGGEFAFVAFGEAVNQVCFQPHT--VFLIPNG 968 (1010)
Q Consensus 891 l~~L~~~~~~iilillvvil~K~l~v~l~~~~~gl~~real~IGl~LaprG~vaLVLa~iAls~GiIs~~~--lVvlvVV 968 (1010)
.+.+..+|..++..+++..+.-++..+..+++++.+.. +..++.||....=+...+..+.|-.++-. .++..=+
T Consensus 70 ~~~l~~~~~~il~~~~~g~~~~~~~~~~l~~~lgl~~~----~~~Sl~pkSVTtpiAi~is~~iGG~~sLta~~VvitGi 145 (215)
T PF04172_consen 70 RRLLKKNWIPILVGVLVGSLVSIFSAVLLARLLGLSPE----IILSLAPKSVTTPIAIEISEQIGGIPSLTAVFVVITGI 145 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHH----HHHHHHHHHhhHHHHHHHHHHhCChHHHHHHHHHHHhh
Confidence 34555566666666666666667777778888888552 23357899887777666777776554332 2222333
Q ss_pred HHHHHHHHHHHHHhh
Q 001810 969 ISIYLQLIMIFFFFN 983 (1010)
Q Consensus 969 lS~IItPiL~~l~~~ 983 (1010)
+..+++|.++++.+-
T Consensus 146 ~Ga~~g~~llk~~~I 160 (215)
T PF04172_consen 146 LGAVLGPPLLKLLRI 160 (215)
T ss_pred HHHHhHHHHHhHccc
Confidence 344556777776544
No 127
>PRK11281 hypothetical protein; Provisional
Probab=83.14 E-value=21 Score=47.45 Aligned_cols=103 Identities=20% Similarity=0.273 Sum_probs=48.4
Q ss_pred HHhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCcccccCCCCcchhhHHHHHhh
Q 001810 196 WNNVNVTLDMVHEIVNEECIAKEAVHKATMALSLAEARLQVAIESLQDVKQEDDYPEGSTEDDAKSDGKEEDGLLLAAEN 275 (1010)
Q Consensus 196 ~~~~~~~~~~~~~~~~~e~~a~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 275 (1010)
..+.+.|++.++++-..+..+++--+ .+.-|.++++-|.+.++..+...+++.. +........+=|..+..-+.
T Consensus 62 ~~~l~~tL~~L~qi~~~~~~~~~L~k----~l~~Ap~~l~~a~~~Le~Lk~~~~~~~~--~~~~~~Sl~qLEq~L~q~~~ 135 (1113)
T PRK11281 62 QQDLEQTLALLDKIDRQKEETEQLKQ----QLAQAPAKLRQAQAELEALKDDNDEETR--ETLSTLSLRQLESRLAQTLD 135 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHhHHHHHHHHHHHHHhhcccccccc--ccccccCHHHHHHHHHHHHH
Confidence 45566666666666555555443333 2333444455555555554443333321 11111122222333344444
Q ss_pred hHHHHHHHHHhhHHHHHHHhhhHHHHHHH
Q 001810 276 DIKECQANLANCETELRRLQSKKEELQKE 304 (1010)
Q Consensus 276 ~~~~~~~~l~~~~~~l~~~~~~~~~lq~~ 304 (1010)
+..+.|++|+.-+.+|..+|++-+..|+.
T Consensus 136 ~Lq~~Q~~La~~NsqLi~~qT~PERAQ~~ 164 (1113)
T PRK11281 136 QLQNAQNDLAEYNSQLVSLQTQPERAQAA 164 (1113)
T ss_pred HHHHHHHHHHHHHHHHHhhhcchHHHHHH
Confidence 55555555666555555555555555554
No 128
>COG4651 RosB Kef-type K+ transport system, predicted NAD-binding component [Inorganic ion transport and metabolism]
Probab=83.03 E-value=13 Score=42.41 Aligned_cols=115 Identities=28% Similarity=0.304 Sum_probs=67.0
Q ss_pred HHHHHHHHHHHHHHhchhHHHHHHHHHHHcCCCchhHHHHHHHHh-HHHHHHHHHHHHhhcccChhhhhhh-hhhHHHHH
Q 001810 828 TLLVILGTSLLTARAGLSMALGAFLAGLLLAETEFSLQVESDIAP-YRGLLLGLFFMTVGMSIDPKLLLSN-FPVITGAL 905 (1010)
Q Consensus 828 tLll~f~~~llAe~lGlSgvLGAFiAGLiLs~~~~~~~L~e~l~~-i~~~f~PLFFVlIGl~Ldl~~L~~~-~~~iilil 905 (1010)
.+..+|....++..+++||..|=.+||++.+.....-.-.+.+.+ +..+=..+....+|+++.+.++... .+.+...+
T Consensus 14 gl~lAFl~G~lA~rlrlsPLVGyL~AGv~~gpftpGFvad~~La~~LAelGViLLmFgvGLhfslkdLLavk~iAipgAl 93 (408)
T COG4651 14 GLVLAFLLGALANRLRLSPLVGYLLAGVLAGPFTPGFVADQTLAPELAELGVILLMFGVGLHFSLKDLLAVKAIAIPGAL 93 (408)
T ss_pred HHHHHHHHHHHHHhcCCCchHHHHHHHHhcCCCCCCcccchhHHHHHHHhhHHHHHHhcchheeHHHHhhHHHHhcchHH
Confidence 455677778899999999999999999999854222222222221 2333334445568999988877652 11111111
Q ss_pred HHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHhhHHHH
Q 001810 906 GLLIGGKTILVALVGRLFGVSVISAIRTGLLLAPGGEF 943 (1010)
Q Consensus 906 lvvil~K~l~v~l~~~~~gl~~real~IGl~LaprG~v 943 (1010)
+-+ ..-....+...+..|+++-..+..|+.++...++
T Consensus 94 ~qi-a~at~lg~gL~~~lgws~~~glvfGlaLS~aSTV 130 (408)
T COG4651 94 AQI-ALATLLGMGLSSLLGWSFGTGIVFGLALSVASTV 130 (408)
T ss_pred HHH-HHHHHHHhHHHHHcCCCcccceeeeehhhhHHHH
Confidence 111 1112223344556677777777777776665443
No 129
>PF00999 Na_H_Exchanger: Sodium/hydrogen exchanger family; InterPro: IPR006153 Sodium proton exchangers (NHEs) constitute a large family of integral membrane protein transporters that are responsible for the counter-transport of protons and sodium ions across lipid bilayers [, ]. These proteins are found in organisms across all domains of life. In archaea, bacteria, yeast and plants, these exchangers provide increased salt tolerance by removing sodium in exchanger for extracellular protons. In mammals they participate in the regulation of cell pH, volume, and intracellular sodium concentration, as well as for the reabsorption of NaCl across renal, intestinal, and other epithelia [, , , ]. Human NHE is also involved in heart disease, cell growth and in cell differentiation []. The removal of intracellular protons in exchange for extracellular sodium effectively eliminates excess acid from actively metabolising cells. In mammalian cells, NHE activity is found in both the plasma membrane and inner mitochondrial membrane. To date, nine mammalian isoforms have been identified (designated NHE1-NHE9) [, ]. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N terminus and a large cytoplasmic region at the C terminus. The transmembrane regions M3-M12 share identity with other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the region that is involved in the transport of sodium and hydrogen ions. The cytoplasmic region has little similarity throughout the family. There is some evidence that the exchangers may exist in the cell membrane as homodimers, but little is currently known about the mechanism of their antiport []. This entry represents a number of cation/proton exchangers, including Na+/H+ exchangers, K+/H+ exchangers and Na+(K+,Li+,Rb+)/H+ exchangers.; GO: 0015299 solute:hydrogen antiporter activity, 0006812 cation transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2L0E_A 2HTG_A 2KBV_A 2E30_B 1Y4E_A.
Probab=83.02 E-value=0.7 Score=52.91 Aligned_cols=116 Identities=22% Similarity=0.265 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHhcCCCchHHHHHHHHHhhcccccccccCchhHHHHH-HHHHHHHHHHHhhcCChhHHH---hchh
Q 001810 607 LWLLLASVIFVPIFQKIPGGSPVLGYLAAGILIGPYGLSIIRHVHGTKAIA-EFGVVFLLFNIGLELSVERLS---SMKK 682 (1010)
Q Consensus 607 llLLl~A~ilg~Ll~Rl~gLP~vVG~ILaGILLGP~gLglI~~~~~le~La-eLGLi~LLF~aGLEidl~~Lr---r~~k 682 (1010)
...+.+..+...+.+.+ |.+++++..++|++++....+- .-.+.++.+. .+..++++...|+++|++.+. ..+.
T Consensus 216 ~~~l~~~~~~~~~a~~~-g~s~~l~af~~Gl~~~~~~~~~-~~~~~l~~~~~~~~~~lfF~~iG~~~~~~~l~~~~~~~~ 293 (380)
T PF00999_consen 216 LLVLALILLLYGLAEIL-GLSGILGAFIAGLILSNSPFAE-RLEEKLESFWYGFFIPLFFVFIGMSLDFSSLFNSPSVII 293 (380)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHhhhccccccc-cccccceeeeeehccccccccc-hhhhcccchhhHHHhhHHhhhhcccccccccccchhhhh
Confidence 33444444446667777 8999999999999999321111 0122244444 777778888999999998884 3333
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHhhhcccCc
Q 001810 683 YVFGLGSAQVLVTAVVVGLVAHFVSGLPGPASIVIGNGLALSS 725 (1010)
Q Consensus 683 ~il~LAlv~vllt~~~Vg~la~~l~Gls~~~ALLLGaILSaTS 725 (1010)
..+.+.+...+. =++.+++..++.++++..++.+|....+-.
T Consensus 294 ~~~~~~~~~~~~-k~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 335 (380)
T PF00999_consen 294 LVLLLLIAILLG-KFIGVYLASRLFGIPWKEALFIGLGMLPRG 335 (380)
T ss_dssp ------------------------------HHHHTTTTSS--H
T ss_pred hHHHHHHHHHHh-hhceeehhhhhcccccchhHHHHHhhcCcc
Confidence 222222221111 122334445556889999999998777433
No 130
>PRK04288 antiholin-like protein LrgB; Provisional
Probab=82.99 E-value=82 Score=34.92 Aligned_cols=48 Identities=15% Similarity=0.084 Sum_probs=31.8
Q ss_pred HHHHHhhcCChhHHHhchhhHHHHHHHHHHHHHHHHHHHHHHhcCCChH
Q 001810 664 LLFNIGLELSVERLSSMKKYVFGLGSAQVLVTAVVVGLVAHFVSGLPGP 712 (1010)
Q Consensus 664 LLF~aGLEidl~~Lrr~~k~il~LAlv~vllt~~~Vg~la~~l~Gls~~ 712 (1010)
..|..=+--+++.+|++++.++.-.+++.++. +..++...+++|.+..
T Consensus 76 VALAvPLY~q~~~lk~~~~~Il~~~~vG~~~~-i~s~~~la~~lgl~~~ 123 (232)
T PRK04288 76 IAFAIPLYKKRDVLKKYWWQILGGIVVGSVCS-VLIIYLVAKLIQLDNA 123 (232)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHCcCHH
Confidence 44555556678899999998877666666654 3445555666777653
No 131
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=82.70 E-value=88 Score=42.29 Aligned_cols=27 Identities=19% Similarity=0.190 Sum_probs=16.6
Q ss_pred CcHHHHHHHHHHHHHHHHHhhhhhHHH
Q 001810 149 TTDELRELLMNAMKELEVAQLNSTMFE 175 (1010)
Q Consensus 149 ~~~~l~~~l~~a~~~le~a~~~~~~~e 175 (1010)
..+.++.-|.....+|+.+.-=..-||
T Consensus 314 ~~~~~~~~l~~~~~~L~~i~~~~~~ye 340 (1201)
T PF12128_consen 314 ELSALNADLARIKSELDEIEQQKKDYE 340 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356666666666666666665555554
No 132
>COG3493 CitS Na+/citrate symporter [Energy production and conversion]
Probab=82.30 E-value=17 Score=42.68 Aligned_cols=119 Identities=12% Similarity=0.079 Sum_probs=79.2
Q ss_pred HHHHHHHHHHH-HHHHHHHHHhcCCCchHH-HHHHHHHhhcccccccccCc------hhHHHHHHHHHHHHHHHHhhc-C
Q 001810 602 SLFDVLWLLLA-SVIFVPIFQKIPGGSPVL-GYLAAGILIGPYGLSIIRHV------HGTKAIAEFGVVFLLFNIGLE-L 672 (1010)
Q Consensus 602 ~Ll~illLLl~-A~ilg~Ll~Rl~gLP~vV-G~ILaGILLGP~gLglI~~~------~~le~LaeLGLi~LLF~aGLE-i 672 (1010)
-++....++.. -+.++.++.++.++|..+ .+++.-.++-. .|++++. ...++++.=..-.+|+-.|+. +
T Consensus 264 ~~~g~G~llA~~lf~~g~il~kf~~~P~~va~MIil~a~lk~--~nlvp~~i~~GA~~l~~F~sk~~t~~Lm~giGv~yt 341 (438)
T COG3493 264 KLMGAGMLLACTLFMAGGILGKFIGLPGPVAFMIILVAILKA--ANLVPKEIEEGAKQLSQFFSKNLTWPLMAGIGVAYT 341 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHH--hCcCCHHHHHHHHHHHHHHHHhhHHHHHHhhhhccc
Confidence 34444444444 344577777775688766 55555555543 3444431 234677777788899999997 9
Q ss_pred ChhHHHhchhhHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHh-hhcc
Q 001810 673 SVERLSSMKKYVFGLGSAQVLVTAVVVGLVAHFVSGLPGPASIVIG-NGLA 722 (1010)
Q Consensus 673 dl~~Lrr~~k~il~LAlv~vllt~~~Vg~la~~l~Gls~~~ALLLG-aILS 722 (1010)
|++++-.......++..+.+.++....+++..++.|+.+.++...+ ++.+
T Consensus 342 dl~ev~~alt~~~vii~~~vVl~~i~~~~f~grl~~~YPVEaAI~aglC~a 392 (438)
T COG3493 342 DLNEVAAALTWQNVIIALSVVLGAILGGAFVGRLMGFYPVEAAITAGLCMA 392 (438)
T ss_pred cHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHhHHhc
Confidence 9999987766666666666777777888888888898665555444 5554
No 133
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=82.23 E-value=57 Score=35.90 Aligned_cols=51 Identities=22% Similarity=0.194 Sum_probs=38.7
Q ss_pred cHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhchhHHHHHHHhhh
Q 001810 150 TDELRELLMNAMKELEVAQLNSTMFEEKAQRISEAAIALKDEAANAWNNVN 200 (1010)
Q Consensus 150 ~~~l~~~l~~a~~~le~a~~~~~~~e~~~~~~~~~ai~~~d~~~~~~~~~~ 200 (1010)
+.+.++-|++|+..+..+..+-.-||.+..+..+.+=-++..|..|-..=|
T Consensus 33 ird~~~~l~~ar~~~A~~~a~~k~~e~~~~~~~~~~~k~e~~A~~Al~~g~ 83 (225)
T COG1842 33 IRDMESELAKARQALAQAIARQKQLERKLEEAQARAEKLEEKAELALQAGN 83 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 566777888888888888888888888888887777666666666655444
No 134
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=81.82 E-value=92 Score=43.83 Aligned_cols=162 Identities=20% Similarity=0.269 Sum_probs=96.1
Q ss_pred CcHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH-------H---HHHHHhch-hHHHHHHHhhhHhHHHHHHHHHHHHHHH
Q 001810 149 TTDELRELLMNAMKELEVAQLNSTMFEEKAQR-------I---SEAAIALK-DEAANAWNNVNVTLDMVHEIVNEECIAK 217 (1010)
Q Consensus 149 ~~~~l~~~l~~a~~~le~a~~~~~~~e~~~~~-------~---~~~ai~~~-d~~~~~~~~~~~~~~~~~~~~~~e~~a~ 217 (1010)
.++.-++=||.|..|+|.+ -.+=|.|..+ + .|.-+.-+ ++....|.+.+.+++++|.....|.-+|
T Consensus 1523 ~le~e~~elQ~aLeElE~~---le~eE~~~lr~~~~~~~~r~e~er~l~ek~Ee~E~~rk~~~~~i~~~q~~Le~E~r~k 1599 (1930)
T KOG0161|consen 1523 RLEQEKEELQAALEELEAA---LEAEEDKKLRLQLELQQLRSEIERRLQEKDEEIEELRKNLQRQLESLQAELEAETRSK 1599 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHH---hhhhhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 3455555566666666653 2222222222 1 12334444 4568999999999999999999888887
Q ss_pred HHHHHH--HHHHHHHHHHHHHHHHHhhhhccCCCCCCCCcccccCCCCcchhhHHHHHhhhHHHHHHHHHhhHHHHHHHh
Q 001810 218 EAVHKA--TMALSLAEARLQVAIESLQDVKQEDDYPEGSTEDDAKSDGKEEDGLLLAAENDIKECQANLANCETELRRLQ 295 (1010)
Q Consensus 218 ~~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~l~~~~~~l~~~~ 295 (1010)
..+-.. .|...+-|...++ +...... .|.-+-.++....+-..|.+..+|++...+--++++..+
T Consensus 1600 ~e~~r~KKkle~di~elE~~l--d~ank~~-----------~d~~K~lkk~q~~~k~lq~~~e~~~~~~~e~~~q~~~ae 1666 (1930)
T KOG0161|consen 1600 SEALRSKKKLEGDINELEIQL--DHANKAN-----------EDAQKQLKKLQAQLKELQRELEDAQRAREELLEQLAEAE 1666 (1930)
T ss_pred HHHHhhhhhhhcchHHHHHHH--HHHHHhh-----------HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 655433 2222232222222 1111110 112223334455666677888888888888887888777
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 001810 296 SKKEELQKEVDRLNEVAEKAQMNALKAEEDV 326 (1010)
Q Consensus 296 ~~~~~lq~~~~~l~~~~~~a~~~a~~a~~~~ 326 (1010)
.|...||.|...|.+..+.+.-+-..||.+.
T Consensus 1667 rr~~~l~~E~eeL~~~l~~~~Rarr~aE~e~ 1697 (1930)
T KOG0161|consen 1667 RRLAALQAELEELREKLEALERARRQAELEL 1697 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 8888888888887777776666666665543
No 135
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=81.62 E-value=1.2e+02 Score=37.68 Aligned_cols=158 Identities=20% Similarity=0.219 Sum_probs=91.3
Q ss_pred hHHHHHHHhhhHhHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhhhhccCCCCCCCCcccccCCCCcc
Q 001810 190 DEAANAWNNVNVTLDMVHEIVNEECIAKEAVHKATM----ALSLAEARLQVAIESLQDVKQEDDYPEGSTEDDAKSDGKE 265 (1010)
Q Consensus 190 d~~~~~~~~~~~~~~~~~~~~~~e~~a~~~~~~~~~----~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (1010)
|++...-..++.-+|.+.+++..|..|+.-|.+... .+.-++...+....-++-.++.+.-.+.
T Consensus 278 ~~~~~~~~~i~~~Id~Lyd~lekE~~A~~~vek~~~~l~~~l~~~~e~~~~l~~Ei~~l~~sY~l~~~------------ 345 (569)
T PRK04778 278 DEAEEKNEEIQERIDQLYDILEREVKARKYVEKNSDTLPDFLEHAKEQNKELKEEIDRVKQSYTLNES------------ 345 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHccccCch------------
Confidence 456666677888899999999999999988876544 3445555555555555555443332222
Q ss_pred hhhHHHHHhhhHHHHHHHHHhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhh
Q 001810 266 EDGLLLAAENDIKECQANLANCETELRRLQSKKEELQKEVDRLNEVAEKAQMNALKAEEDVANIMLLAEQAVAFEIEATQ 345 (1010)
Q Consensus 266 ~~~~~~~a~~~~~~~~~~l~~~~~~l~~~~~~~~~lq~~~~~l~~~~~~a~~~a~~a~~~~~~~m~~ae~av~~e~ea~~ 345 (1010)
|.+.....++++++++..+..++..+...+..-.++|++.+.+.+.-+..+..-.+-.+.+. ..-..|.+|-+
T Consensus 346 e~~~~~~lekeL~~Le~~~~~~~~~i~~~~~~ysel~e~leel~e~leeie~eq~ei~e~l~-------~Lrk~E~eAr~ 418 (569)
T PRK04778 346 ELESVRQLEKQLESLEKQYDEITERIAEQEIAYSELQEELEEILKQLEEIEKEQEKLSEMLQ-------GLRKDELEARE 418 (569)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHH
Confidence 23455555666666666666555555555555555555555554444333333222222222 33445667777
Q ss_pred hcccHHHHHHHHHHhhcCCCC
Q 001810 346 RVNDAEIALQRAEKSLSNSSV 366 (1010)
Q Consensus 346 ~~~~~e~~l~~~~~~~~~~~~ 366 (1010)
.+..-...|.....-+..++.
T Consensus 419 kL~~~~~~L~~ikr~l~k~~l 439 (569)
T PRK04778 419 KLERYRNKLHEIKRYLEKSNL 439 (569)
T ss_pred HHHHHHHHHHHHHHHHHHcCC
Confidence 666666666665555555543
No 136
>COG0786 GltS Na+/glutamate symporter [Amino acid transport and metabolism]
Probab=81.31 E-value=46 Score=39.39 Aligned_cols=123 Identities=17% Similarity=0.176 Sum_probs=79.0
Q ss_pred HHHHHHHHHHHHHHHHHhc-CCCchHHHHHHHHHhhcccc--ccccc-CchhHHHHHHHHHHHHHHHHhhcCChhHHHhc
Q 001810 605 DVLWLLLASVIFVPIFQKI-PGGSPVLGYLAAGILIGPYG--LSIIR-HVHGTKAIAEFGVVFLLFNIGLELSVERLSSM 680 (1010)
Q Consensus 605 ~illLLl~A~ilg~Ll~Rl-~gLP~vVG~ILaGILLGP~g--LglI~-~~~~le~LaeLGLi~LLF~aGLEidl~~Lrr~ 680 (1010)
.+++-+.++..+..+++.. ..+|..++.+++|+++-... ++..+ +.+..+.++++.+.+++=.+=+.+.+-.+-..
T Consensus 226 ~i~i~~~vG~~i~~~l~~~~~~lP~fv~~lfvgiIvrni~~~~~~~~v~~~~v~~ig~vsL~lflamALmSlkLweL~~l 305 (404)
T COG0786 226 IIAICLAVGKIINQLLKSLGLALPLFVMCLFVGVILRNILDLLKKYRVFRRAVDVIGNVSLSLFLAMALMSLKLWELADL 305 (404)
T ss_pred HHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHhHHHHhccccccHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhc
Confidence 3344444555555555532 26899999999999998642 11111 34567888888888887777778888888777
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHH----HhhhcccCcHH
Q 001810 681 KKYVFGLGSAQVLVTAVVVGLVAHFVSGLPGPASIV----IGNGLALSSTA 727 (1010)
Q Consensus 681 ~k~il~LAlv~vllt~~~Vg~la~~l~Gls~~~ALL----LGaILSaTSpA 727 (1010)
+-+.+++-.+++++..+..-++.+.+.|-++-.+.+ .|..+.+|.++
T Consensus 306 ~lpl~viL~vQ~i~m~lfa~fvtfr~mG~~YdAaV~~~G~~G~gLGATPtA 356 (404)
T COG0786 306 ALPLLVILAVQTIVMALFAIFVTFRLMGKNYDAAVLAAGHCGFGLGATPTA 356 (404)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHhCcchhHHHHhcccccCccCCcHHH
Confidence 777777777777765544444556667776654444 34444444443
No 137
>PRK10711 hypothetical protein; Provisional
Probab=80.95 E-value=72 Score=35.30 Aligned_cols=90 Identities=6% Similarity=-0.085 Sum_probs=56.9
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHhhHHHHHHHHHHHHHhCCCCChhh--HHHHHHH
Q 001810 891 PKLLLSNFPVITGALGLLIGGKTILVALVGRLFGVSVISAIRTGLLLAPGGEFAFVAFGEAVNQVCFQPHT--VFLIPNG 968 (1010)
Q Consensus 891 l~~L~~~~~~iilillvvil~K~l~v~l~~~~~gl~~real~IGl~LaprG~vaLVLa~iAls~GiIs~~~--lVvlvVV 968 (1010)
.+.+..+|..++..+++..+.-++..++.+++++.+.. +..+|.||....=+...++.+.|-+++-. .+++.=+
T Consensus 81 ~~~lk~~~~~I~~~~~vG~~v~i~s~~~l~~~lg~~~~----~~~Sl~pkSVTtPIAm~is~~iGG~~sLta~~ViitGi 156 (231)
T PRK10711 81 LHQIRARWKSIISICFIGSVVAMVTGTAVALWMGATPE----IAASILPKSVTTPIAMAVGGSIGGIPAISAVCVIFVGI 156 (231)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHH----HHHHHhhhhhhHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 34444556555555555566667777888888888553 23457999888777777777777654333 3333334
Q ss_pred HHHHHHHHHHHHHhhc
Q 001810 969 ISIYLQLIMIFFFFNC 984 (1010)
Q Consensus 969 lS~IItPiL~~l~~~~ 984 (1010)
+-.+++|.++++.+-+
T Consensus 157 ~Ga~~g~~llk~~rI~ 172 (231)
T PRK10711 157 LGAVFGHTLLNAMRIR 172 (231)
T ss_pred HHHHHHHHHHHHcCCC
Confidence 4556678887776543
No 138
>PRK02224 chromosome segregation protein; Provisional
Probab=80.70 E-value=1.1e+02 Score=39.67 Aligned_cols=8 Identities=50% Similarity=1.389 Sum_probs=4.8
Q ss_pred CCCCcccC
Q 001810 99 GVCPTCQG 106 (1010)
Q Consensus 99 ~~~~~~~~ 106 (1010)
+.|+.|+.
T Consensus 452 ~~Cp~C~r 459 (880)
T PRK02224 452 GKCPECGQ 459 (880)
T ss_pred ccCCCCCC
Confidence 45666764
No 139
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=79.55 E-value=17 Score=37.16 Aligned_cols=61 Identities=25% Similarity=0.328 Sum_probs=54.6
Q ss_pred HHHHHhhhHHHHHHHHHhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 001810 269 LLLAAENDIKECQANLANCETELRRLQSKKEELQKEVDRLNEVAEKAQMNALKAEEDVANI 329 (1010)
Q Consensus 269 ~~~~a~~~~~~~~~~l~~~~~~l~~~~~~~~~lq~~~~~l~~~~~~a~~~a~~a~~~~~~~ 329 (1010)
-...+...+++........|.|+..||.|..-|+.+|+++++....++.+....+...+|.
T Consensus 15 r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~~ 75 (143)
T PF12718_consen 15 RAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSNA 75 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhH
Confidence 3456788999999999999999999999999999999999999999999988888877663
No 140
>KOG3826 consensus Na+/H+ antiporter [Inorganic ion transport and metabolism]
Probab=79.04 E-value=2.2 Score=46.61 Aligned_cols=130 Identities=12% Similarity=0.044 Sum_probs=90.1
Q ss_pred HHHHHHHHHHHHHHHHhc-----CCCchHHHHHHHHHhhccccc--ccccCchhHHHHHHHHHHHHHHHHhhcCChhHHH
Q 001810 606 VLWLLLASVIFVPIFQKI-----PGGSPVLGYLAAGILIGPYGL--SIIRHVHGTKAIAEFGVVFLLFNIGLELSVERLS 678 (1010)
Q Consensus 606 illLLl~A~ilg~Ll~Rl-----~gLP~vVG~ILaGILLGP~gL--glI~~~~~le~LaeLGLi~LLF~aGLEidl~~Lr 678 (1010)
..++...+...+.+.+-. .++|+.+|++++|.++=...+ +.+..+-....+..+....+.-..|++++.+.++
T Consensus 102 ~iV~~~lA~~g~~lle~A~~P~~i~l~~aigel~a~fLiiNI~~~~~~~~~~iv~s~l~t~a~~I~~ik~gLgt~~r~~~ 181 (252)
T KOG3826|consen 102 LIVIWGLATDGGFLLELARVPVTIGLPTAIGELLAGFLIINISFVNGAVCAPIVVSPLRTVALTIIKIKAGLGTLPRAPE 181 (252)
T ss_pred eehhhhHhhchHhhHhhccccccccccchHHHHHHHHHheecchhhhceeeeeeehhhhhccchHHHHHhhhcccccchh
Confidence 334445555556665532 256678999999977664321 1122233345677788888999999999999998
Q ss_pred hchhhHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHhhhcccCcHHHHHHHHHH
Q 001810 679 SMKKYVFGLGSAQVLVTAVVVGLVAHFVSGLPGPASIVIGNGLALSSTAVVLQVLQE 735 (1010)
Q Consensus 679 r~~k~il~LAlv~vllt~~~Vg~la~~l~Gls~~~ALLLGaILSaTSpAVvv~IL~e 735 (1010)
+...-...+++...+..+-+-....+++...+|.++++.|.++...+..+..+-...
T Consensus 182 nv~~vc~~~~v~~~~~~a~a~~~~S~~~l~~~ii~~~l~g~v~~~i~~~~~r~~~~h 238 (252)
T KOG3826|consen 182 NVLAVCCVLMVLPSIIEASAPAVTSHFLLAGPIIWAFLLGIVIGSILWRFPRPDYQH 238 (252)
T ss_pred hhhHHHhhhhhhhhhhccccHHHHHHHHhccchHHHhccccceeeeecCCccccchh
Confidence 887777777766665544444555688889999999999999988877766555443
No 141
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=78.95 E-value=83 Score=44.26 Aligned_cols=196 Identities=18% Similarity=0.247 Sum_probs=111.8
Q ss_pred cHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhchhHHHHHHHhhhHhHHHHHHHHHHHHHHHHHHH---HHHHH
Q 001810 150 TDELRELLMNAMKELEVAQLNSTMFEEKAQRISEAAIALKDEAANAWNNVNVTLDMVHEIVNEECIAKEAVH---KATMA 226 (1010)
Q Consensus 150 ~~~l~~~l~~a~~~le~a~~~~~~~e~~~~~~~~~ai~~~d~~~~~~~~~~~~~~~~~~~~~~e~~a~~~~~---~~~~~ 226 (1010)
+++.|....+.-.+++.|+-..--.+.+++++...-=-++|..+.........=+.|.+..+...++--.++ ++.-.
T Consensus 1444 l~e~k~~~e~l~~Eld~aq~e~r~~~tel~kl~~~lee~~e~~e~l~renk~l~~ei~dl~~~~~e~~k~v~elek~~r~ 1523 (1930)
T KOG0161|consen 1444 LAEWKKKLEKLQAELDAAQRELRQLSTELQKLKNALEELLEQLEELRRENKNLSQEIEDLEEQKDEGGKRVHELEKEKRR 1523 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677888888888888888888888888888888776666666666666666666667777776666655554 33344
Q ss_pred HHHHHHHHHHHHHHhhhhccCCCCCC-------CCcccccCCCCcchhhHHHHHh----hhH------------------
Q 001810 227 LSLAEARLQVAIESLQDVKQEDDYPE-------GSTEDDAKSDGKEEDGLLLAAE----NDI------------------ 277 (1010)
Q Consensus 227 ~~~a~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~a~----~~~------------------ 277 (1010)
+..=.+.||.|.+-+++.-+..+.-- .-..++-+.+.-+.+|..+..+ ..|
T Consensus 1524 le~e~~elQ~aLeElE~~le~eE~~~lr~~~~~~~~r~e~er~l~ek~Ee~E~~rk~~~~~i~~~q~~Le~E~r~k~e~~ 1603 (1930)
T KOG0161|consen 1524 LEQEKEELQAALEELEAALEAEEDKKLRLQLELQQLRSEIERRLQEKDEEIEELRKNLQRQLESLQAELEAETRSKSEAL 1603 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 44444447777777777432222211 0001111111111111111111 111
Q ss_pred ---HHHHHHHHhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH---HHhhhHHHHHHHHHHHHH---HHHHHHHHhh
Q 001810 278 ---KECQANLANCETELRRLQSKKEELQKEVDRLNEVAEKAQM---NALKAEEDVANIMLLAEQ---AVAFEIEATQ 345 (1010)
Q Consensus 278 ---~~~~~~l~~~~~~l~~~~~~~~~lq~~~~~l~~~~~~a~~---~a~~a~~~~~~~m~~ae~---av~~e~ea~~ 345 (1010)
|.-+..+.+.|..|...-..++++||...+++....-.|. ++..+.+|+-.--..||+ |+..|+|-.+
T Consensus 1604 r~KKkle~di~elE~~ld~ank~~~d~~K~lkk~q~~~k~lq~~~e~~~~~~~e~~~q~~~aerr~~~l~~E~eeL~ 1680 (1930)
T KOG0161|consen 1604 RSKKKLEGDINELEIQLDHANKANEDAQKQLKKLQAQLKELQRELEDAQRAREELLEQLAEAERRLAALQAELEELR 1680 (1930)
T ss_pred hhhhhhhcchHHHHHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1223334455555666666777888888888877664443 456666776666666653 4445555433
No 142
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=78.90 E-value=13 Score=42.97 Aligned_cols=94 Identities=29% Similarity=0.362 Sum_probs=51.9
Q ss_pred HHHHhhhHHHHHHHHHhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 001810 270 LLAAENDIKECQANLANCETELRRLQSKKEELQKEVDRLNEVAEKAQMNALKAEEDVANIMLLAEQAVAFEIEATQRVND 349 (1010)
Q Consensus 270 ~~~a~~~~~~~~~~l~~~~~~l~~~~~~~~~lq~~~~~l~~~~~~a~~~a~~a~~~~~~~m~~ae~av~~e~ea~~~~~~ 349 (1010)
|..+..++.+-|..|...+.+|.+-+...+++-+++..=++.+++.+..+.+-|+.+ + .-++++=..-=||-+.++.
T Consensus 10 L~et~~~V~~m~~~L~~~~~~L~~k~~e~e~ll~~i~~~~~~a~~~~~~~~~ee~~~-~--~~~~ei~~~~~~a~~~L~~ 86 (344)
T PF12777_consen 10 LKETEEQVEEMQEELEEKQPELEEKQKEAEELLEEIEKEQEEAEKKKAIVEEEEEEA-E--KQAKEIEEIKEEAEEELAE 86 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH-H--HHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H--HHHHHHHHHHHHHHHHHHH
Confidence 445555566666666666666665555555555555444444544443332222222 1 1122222222356677888
Q ss_pred HHHHHHHHHHhhcCCCC
Q 001810 350 AEIALQRAEKSLSNSSV 366 (1010)
Q Consensus 350 ~e~~l~~~~~~~~~~~~ 366 (1010)
|+=+|..|++.+++++.
T Consensus 87 a~P~L~~A~~al~~l~k 103 (344)
T PF12777_consen 87 AEPALEEAQEALKSLDK 103 (344)
T ss_dssp HHHHHHHHHHHHHCS-H
T ss_pred HHHHHHHHHHHHHhCCH
Confidence 99999999999999985
No 143
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=78.81 E-value=38 Score=41.76 Aligned_cols=17 Identities=24% Similarity=0.251 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHhhh
Q 001810 227 LSLAEARLQVAIESLQD 243 (1010)
Q Consensus 227 ~~~a~~~~~~~~~~~~~ 243 (1010)
++-+...++-+...+..
T Consensus 275 l~~~~~~l~d~~~~l~~ 291 (563)
T TIGR00634 275 VGNALTEVEEATRELQN 291 (563)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33334444444444433
No 144
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=78.80 E-value=1e+02 Score=33.42 Aligned_cols=49 Identities=12% Similarity=0.207 Sum_probs=35.0
Q ss_pred cHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhchhHHHHHHHh
Q 001810 150 TDELRELLMNAMKELEVAQLNSTMFEEKAQRISEAAIALKDEAANAWNN 198 (1010)
Q Consensus 150 ~~~l~~~l~~a~~~le~a~~~~~~~e~~~~~~~~~ai~~~d~~~~~~~~ 198 (1010)
+.++++-|.+++..+..+......+|.+...+...+=-..+.|..|-..
T Consensus 33 irem~~~l~~ar~~lA~~~a~~k~~e~~~~~~~~~~~~~~~~A~~Al~~ 81 (219)
T TIGR02977 33 IQEMEDTLVEVRTTSARTIADKKELERRVSRLEAQVADWQEKAELALSK 81 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 5677778888888887777777888877777766666666666555443
No 145
>PF03977 OAD_beta: Na+-transporting oxaloacetate decarboxylase beta subunit; InterPro: IPR005661 Members of this family are integral membrane proteins. The decarboxylation reactions they catalyse are coupled to the vectorial transport of Na+ across the cytoplasmic membrane, thereby creating a sodium ion motive force that is used for ATP synthesis [].; GO: 0016829 lyase activity, 0006814 sodium ion transport
Probab=78.63 E-value=21 Score=41.36 Aligned_cols=106 Identities=18% Similarity=0.124 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHhhcccChhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHhhHHHHHHHHHHHHHh
Q 001810 874 RGLLLGLFFMTVGMSIDPKLLLSNFPVITGALGLLIGGKTILVALVGRLFGVSVISAIRTGLLLAPGGEFAFVAFGEAVN 953 (1010)
Q Consensus 874 ~~~f~PLFFVlIGl~Ldl~~L~~~~~~iilillvvil~K~l~v~l~~~~~gl~~real~IGl~LaprG~vaLVLa~iAls 953 (1010)
.+++=|+.|+-+|...|+.-+..+++. +++-...-++- ..+++.....|++.+|+..+|..=+.=|..++.+...-.
T Consensus 68 ~~l~P~LIF~GIGAmtDFgpllanP~~-~llGaaAQ~Gi-f~t~~~A~~lGf~~~eAAsIgIIGgADGPtsIf~s~~LA- 144 (360)
T PF03977_consen 68 NGLFPPLIFMGIGAMTDFGPLLANPKT-LLLGAAAQFGI-FATFLGAILLGFTPKEAASIGIIGGADGPTSIFVSSKLA- 144 (360)
T ss_pred cchhhHHHHHHHhHHHhhHHHHhCHHH-HHHHHHHHHhH-HHHHHHHHHhCCCHHHhhHhhhcccCCCcHHHHHHHhhh-
Confidence 468888899999999999988776544 22223333333 334555666799999999999877777777776654221
Q ss_pred CCCCChhh-HHHHHHHHHHHHHHHHHHHHh
Q 001810 954 QVCFQPHT-VFLIPNGISIYLQLIMIFFFF 982 (1010)
Q Consensus 954 ~GiIs~~~-lVvlvVVlS~IItPiL~~l~~ 982 (1010)
-.++.+-. .-.....+.=++-|++.|+.-
T Consensus 145 p~LlgpIaVaAYsYMaLvPiiqPpimklLt 174 (360)
T PF03977_consen 145 PHLLGPIAVAAYSYMALVPIIQPPIMKLLT 174 (360)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHhc
Confidence 11111111 122223333356677777743
No 146
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=78.15 E-value=26 Score=40.10 Aligned_cols=50 Identities=20% Similarity=0.184 Sum_probs=30.3
Q ss_pred HHHHhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 001810 194 NAWNNVNVTLDMVHEIVNEECIAKEAVHKATMALSLAEARLQVAIESLQD 243 (1010)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~e~~a~~~~~~~~~~~~~a~~~~~~~~~~~~~ 243 (1010)
..+......++..+....+-.+.++.+.++...+.-|+++++.+.+-+..
T Consensus 128 ~~l~~a~~~~~R~~~L~~~g~vS~~~~~~a~~~~~~a~~~l~~a~~~~~~ 177 (346)
T PRK10476 128 ANAKLATRTLERLEPLLAKGYVSAQQVDQARTAQRDAEVSLNQALLQAQA 177 (346)
T ss_pred HHHHHHHHHHHHHHHHHHCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444555666666666667777776766666666666666554444
No 147
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=77.86 E-value=1e+02 Score=38.14 Aligned_cols=32 Identities=16% Similarity=0.237 Sum_probs=17.4
Q ss_pred cccCCCcc--eeEEec----CCCCccc--cccccCCCccc
Q 001810 58 SYAGCSKS--SLVFRG----NSDANLW--GLYTCKSLFCS 89 (1010)
Q Consensus 58 ~~~~~~~~--~~~~~~----~~~~~~~--~~~~~~~~~~~ 89 (1010)
.|..|+.. .|.|.+ ++++.+| ..-+.++.+++
T Consensus 64 ~~~~~s~~~~~V~F~ayyLPk~~~e~YqfcYv~~~g~V~G 103 (546)
T PF07888_consen 64 NYVEGSAVNCQVQFQAYYLPKDDDEFYQFCYVDQKGEVRG 103 (546)
T ss_pred cccCCCccceEEEECcccCCCCCCCeEEEEEECCCccEEE
Confidence 45666554 567884 4445555 33344555554
No 148
>TIGR00659 conserved hypothetical protein TIGR00659. Members of this small but broadly distibuted (Gram-positive, Gram-negative, and Archaeal) family appear to have multiple transmembrane segments. The function is unknown. A homolog, LrgB of Staphylococcus aureus, in the same small superfamily but in an outgroup to this subfamily, is regulated by LytSR and is suggested to act as a murein hydrolase. Of the three paralogous proteins in B. subtilis, one is a full length member of this family, one lacks the C-terminal 60 residues and has an additional 128 N-terminal residues but branches within the family in a phylogenetic tree, and one is closely related to LrgB and part of the outgroup.
Probab=76.94 E-value=1.2e+02 Score=33.39 Aligned_cols=89 Identities=12% Similarity=0.034 Sum_probs=53.0
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHhhHHHHHHHHHHHHHhCCCCChhh--HHHHHHH
Q 001810 891 PKLLLSNFPVITGALGLLIGGKTILVALVGRLFGVSVISAIRTGLLLAPGGEFAFVAFGEAVNQVCFQPHT--VFLIPNG 968 (1010)
Q Consensus 891 l~~L~~~~~~iilillvvil~K~l~v~l~~~~~gl~~real~IGl~LaprG~vaLVLa~iAls~GiIs~~~--lVvlvVV 968 (1010)
.+.+..+|..++..+++..+.-+...+..++.+|.+. .+. .++.||....=+...++.+.|-+++-. .+++.=+
T Consensus 80 ~~~lk~~~~~Il~~~~~G~~~~~~s~~~la~~lg~~~--~i~--~Sl~pkSvTtpiAm~vs~~iGG~~sLta~~vvitGi 155 (226)
T TIGR00659 80 LPQIKKYWKEIILNVAVGSVIAIISGTLLALLLGLGP--EII--ASLLPKSVTTPIAMHVSEMIGGIPAVTAVFVILTGL 155 (226)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcCH--HHH--HHhhhHHhhHHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence 3444455555555555555566677777888888863 222 357999888777777777776543322 2333334
Q ss_pred HHHHHHHHHHHHHhh
Q 001810 969 ISIYLQLIMIFFFFN 983 (1010)
Q Consensus 969 lS~IItPiL~~l~~~ 983 (1010)
+-.+++|.++++.+-
T Consensus 156 ~Ga~~g~~ll~~~~i 170 (226)
T TIGR00659 156 LGTVFGPMVLRYFRV 170 (226)
T ss_pred HHHHHHHHHHHHcCC
Confidence 444556666666543
No 149
>COG0679 Predicted permeases [General function prediction only]
Probab=76.78 E-value=1.4e+02 Score=33.96 Aligned_cols=107 Identities=23% Similarity=0.292 Sum_probs=63.2
Q ss_pred CCchHHHHHHHHHhhcccccccccC-chhHHHHHHHHHHHHHHHHhhcCChhHHHhchhhHHHHHHH-HHHHHHHHHHHH
Q 001810 625 GGSPVLGYLAAGILIGPYGLSIIRH-VHGTKAIAEFGVVFLLFNIGLELSVERLSSMKKYVFGLGSA-QVLVTAVVVGLV 702 (1010)
Q Consensus 625 gLP~vVG~ILaGILLGP~gLglI~~-~~~le~LaeLGLi~LLF~aGLEidl~~Lrr~~k~il~LAlv-~vllt~~~Vg~l 702 (1010)
+.|++++ .+.|+++...++.+-+. .+..+.++....++.|+..|..++....++........+.. -.++.+ ++.+.
T Consensus 167 ~nP~i~a-~i~g~~~~~~~i~lP~~~~~~~~~l~~a~~pl~li~lG~~L~~~~~~~~~~~~~~~~~~~kll~~P-l~~~~ 244 (311)
T COG0679 167 TNPLIIA-LILGLLLNLLGISLPAPLDTAVDLLASAASPLALIALGLSLAFLKLKGSKPPIILIALSLKLLLAP-LVALL 244 (311)
T ss_pred hCcHHHH-HHHHHHHHHcCCCCcHHHHHHHHHHHHhhhhHHHHHHhhhcchhhhccccchhHHHHHHHHHHHHH-HHHHH
Confidence 4455544 56677777544433211 23457888999999999999999997777766665555554 233333 34455
Q ss_pred HHHhcCCChHHHHHHhhhcccCcHHHHHHHHH
Q 001810 703 AHFVSGLPGPASIVIGNGLALSSTAVVLQVLQ 734 (1010)
Q Consensus 703 a~~l~Gls~~~ALLLGaILSaTSpAVvv~IL~ 734 (1010)
+.+++|++.... ....+.++..+++..-++.
T Consensus 245 ~~~~~~l~~~~~-~v~vl~~a~P~A~~~~v~a 275 (311)
T COG0679 245 VAKLLGLSGLAL-QVLVLLSAMPTAVNAYVLA 275 (311)
T ss_pred HHHHcCCChHHH-HHHHHHhhCcHHhHHHHHH
Confidence 666777765543 2233333344444444443
No 150
>PRK12472 hypothetical protein; Provisional
Probab=76.22 E-value=53 Score=39.76 Aligned_cols=100 Identities=22% Similarity=0.215 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCcccccCCCCcchhhHHHHHhhhHHHHHHHHHhhHHHHHH
Q 001810 214 CIAKEAVHKATMALSLAEARLQVAIESLQDVKQEDDYPEGSTEDDAKSDGKEEDGLLLAAENDIKECQANLANCETELRR 293 (1010)
Q Consensus 214 ~~a~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~l~~~~~~l~~ 293 (1010)
..++-.+.++..+..-|+++|..|-..|++++- | ++-. +
T Consensus 221 ~~~~~~l~~~e~~~~~a~~~l~~adk~l~~a~~---------------d-----~~~~---------------------~ 259 (508)
T PRK12472 221 APLKASLRKLERAKARADAELKRADKALAAAKT---------------D-----EAKA---------------------R 259 (508)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---------------c-----hhhh---------------------h
Confidence 344555666666777788888888888877541 0 1111 1
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhhhcccHHHHH
Q 001810 294 LQSKKEELQKEVDRLNEVAEKAQMNALKAEEDVANIMLLAEQAVAFEIEATQRVNDAEIAL 354 (1010)
Q Consensus 294 ~~~~~~~lq~~~~~l~~~~~~a~~~a~~a~~~~~~~m~~ae~av~~e~ea~~~~~~~e~~l 354 (1010)
.+++|.++-.++...+..++.|+.+|...+..++..-..|..|=+.--|++.-.+|++.++
T Consensus 260 a~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~a~~~a~~~~~~~~~~a~~a~l~~ 320 (508)
T PRK12472 260 AEERQQKAAQQAAEAATQLDTAKADAEAKRAAAAATKEAAKAAAAKKAETAKAATDAKLAL 320 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhc
Confidence 1134555555666667777778888888888888777778877777778888888887765
No 151
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=75.84 E-value=2.1e+02 Score=35.34 Aligned_cols=22 Identities=23% Similarity=0.311 Sum_probs=12.7
Q ss_pred chhhHHHHHHHHHHhhchhHHHH
Q 001810 509 TQASIFQGLMEYARKQLPKLVLG 531 (1010)
Q Consensus 509 ~~~~~~~~~~~~~~~~~~~~~~g 531 (1010)
.|+.+ .-+++.+++++-+-+.=
T Consensus 274 hp~ri-ee~~~~~~~~~~~~i~~ 295 (514)
T TIGR03319 274 HPARI-EEMVEKATKEVDNAIRE 295 (514)
T ss_pred CHHHH-HHHHHHHHHHHHHHHHH
Confidence 45554 44666666666665543
No 152
>PF05982 DUF897: Domain of unknown function (DUF897) ; InterPro: IPR010293 This is a family of bacterial proteins with unknown function
Probab=75.48 E-value=27 Score=40.35 Aligned_cols=104 Identities=19% Similarity=0.326 Sum_probs=57.7
Q ss_pred HHHHHHHHhhcccccccccCchhHHHHHHHHHHHHHHHHhhcC--ChhHHHhchhhHHHHHHHHHHHHHHHHHHHHHHhc
Q 001810 630 LGYLAAGILIGPYGLSIIRHVHGTKAIAEFGVVFLLFNIGLEL--SVERLSSMKKYVFGLGSAQVLVTAVVVGLVAHFVS 707 (1010)
Q Consensus 630 VG~ILaGILLGP~gLglI~~~~~le~LaeLGLi~LLF~aGLEi--dl~~Lrr~~k~il~LAlv~vllt~~~Vg~la~~l~ 707 (1010)
+|-++.|.+.||.+..-+. ..+..+..-.+.++|...|+.- .++++|+..+..+..+++.-++- ..+|+.+.++.
T Consensus 184 lGgliIG~~~g~~g~~~i~--pf~~~lF~G~L~lFLLeMGl~A~~rL~~l~~~g~~li~Fgi~~Pli~-a~ig~~lg~~~ 260 (327)
T PF05982_consen 184 LGGLIIGFLAGPEGVESIK--PFFVDLFKGVLCLFLLEMGLVAARRLRDLRKVGWFLIAFGILMPLIN-ALIGIGLGWLL 260 (327)
T ss_pred HHHHHHhheeCccchhhcc--chhhccHHHHHHHHHHHhhHHHHHhhHHHHhhhHHHHHHHHHHHHHH-HHHHHHHHHHh
Confidence 4555555566665443332 2233344445667777777754 33466666665555555433332 34566666778
Q ss_pred CCChHHHHHHhhhcccCcHHHHHHHHHHcC
Q 001810 708 GLPGPASIVIGNGLALSSTAVVLQVLQERG 737 (1010)
Q Consensus 708 Gls~~~ALLLGaILSaTSpAVvv~IL~elg 737 (1010)
|++.-.+.+++...+ ++.=++.+...+..
T Consensus 261 gls~Gg~~llavLaA-SASYIAvPAAmR~A 289 (327)
T PF05982_consen 261 GLSPGGAVLLAVLAA-SASYIAVPAAMRAA 289 (327)
T ss_pred CCCCccHHHHHHHHh-hHhhhhhhHHHHhh
Confidence 999888888875544 44444444444333
No 153
>COG3524 KpsE Capsule polysaccharide export protein [Cell envelope biogenesis, outer membrane]
Probab=75.38 E-value=66 Score=36.88 Aligned_cols=64 Identities=28% Similarity=0.404 Sum_probs=43.2
Q ss_pred HhhhhhHHHHH-HHHHHHHHHhchhHHHHHHHhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 001810 167 AQLNSTMFEEK-AQRISEAAIALKDEAANAWNNVNVTLDMVHEIVNEECIAKEAVHKATMALSLAEARLQVAIESLQDVK 245 (1010)
Q Consensus 167 a~~~~~~~e~~-~~~~~~~ai~~~d~~~~~~~~~~~~~~~~~~~~~~e~~a~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 245 (1010)
.++|=|.|+.| ||+|++. +-|+-..--|.+| |--+++.+.-|.-.+.-||+|.+-|.-.|-+-|
T Consensus 142 ~~v~V~aF~p~eaq~Iaqa---ilkqse~lIN~Ls------------~rAr~dt~r~Ae~eV~~~eerv~kAs~~L~~yr 206 (372)
T COG3524 142 STVNVTAFDPKEAQKIAQA---ILKQSEKLINQLS------------ERARRDTVRFAEEEVQKAEERVKKASNDLTDYR 206 (372)
T ss_pred eEEEEeecChhhHHHHHHH---HHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 56788889864 8998874 3445544444444 344555666666677778889988888877655
No 154
>COG1346 LrgB Putative effector of murein hydrolase [Cell envelope biogenesis, outer membrane]
Probab=75.20 E-value=1.4e+02 Score=33.09 Aligned_cols=77 Identities=12% Similarity=0.099 Sum_probs=49.0
Q ss_pred HHHHHHHhhcCChhHHHhchhhHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHhhhcccCcHHHHHHHHHHcCCCCC
Q 001810 662 VFLLFNIGLELSVERLSSMKKYVFGLGSAQVLVTAVVVGLVAHFVSGLPGPASIVIGNGLALSSTAVVLQVLQERGESTS 741 (1010)
Q Consensus 662 i~LLF~aGLEidl~~Lrr~~k~il~LAlv~vllt~~~Vg~la~~l~Gls~~~ALLLGaILSaTSpAVvv~IL~elg~l~s 741 (1010)
....|..=+-=+++.+||+|+.++.-.+++.++. +..++.+..++|++.....-+ .--...+++++.+-++.|-.+.
T Consensus 71 AtVAlAvPLYkq~~~ik~~w~~I~~g~~vGs~~a-i~s~~llak~~g~~~~~~~Sl--~PkSvTTpiAm~vs~~iGGip~ 147 (230)
T COG1346 71 ATVALAVPLYKQRHLIKRHWKPILAGVLVGSVVA-IISGVLLAKLFGLSPELILSL--LPKSVTTPIAMEVSESIGGIPA 147 (230)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhCCCHHHHHHh--cccccccHHHHHHHHhcCCchH
Confidence 3455666666789999999999887766666553 345556666778875432221 1222336777888888775443
No 155
>PF13593 DUF4137: SBF-like CPA transporter family (DUF4137)
Probab=74.82 E-value=41 Score=38.51 Aligned_cols=89 Identities=19% Similarity=0.123 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHcCCCchh-HHHHHHHHhHHHHHHHHHHHHhhcccChhhhhh---hhhhHHHHHHHHHHHHHHHHHHHHH
Q 001810 846 MALGAFLAGLLLAETEFS-LQVESDIAPYRGLLLGLFFMTVGMSIDPKLLLS---NFPVITGALGLLIGGKTILVALVGR 921 (1010)
Q Consensus 846 gvLGAFiAGLiLs~~~~~-~~L~e~l~~i~~~f~PLFFVlIGl~Ldl~~L~~---~~~~iilillvvil~K~l~v~l~~~ 921 (1010)
+++.+.+.|...|..... ..+. .+....+...+.|...|++++.+.+.. +|...+...+..++.=++.++...+
T Consensus 6 ~l~~ai~la~~~P~~g~~~~~~~--~~~~~~~~v~~iFf~~Gl~L~~~~l~~~~~~~~~~l~~~~~~fvl~Pll~~~~~~ 83 (313)
T PF13593_consen 6 GLLLAILLAYLFPAPGAAGGVIK--PEYVIKYGVALIFFISGLSLPTEELKAALRNWRLHLFVQAFNFVLFPLLGFGLSR 83 (313)
T ss_pred HHHHHHHHHHHcCcccccCCccc--hhhhHHHHHHHHHHHHcCCCCHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667777777764321 1111 012333446667777899999888765 3555454445555555555555555
Q ss_pred hhCCChHHHHHHHHH
Q 001810 922 LFGVSVISAIRTGLL 936 (1010)
Q Consensus 922 ~~gl~~real~IGl~ 936 (1010)
..+....+.+..|+.
T Consensus 84 l~~~~~~~~l~~Gl~ 98 (313)
T PF13593_consen 84 LFPAFLPPELALGLL 98 (313)
T ss_pred HhhccCCHHHHHHHH
Confidence 443222233555554
No 156
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=73.85 E-value=2.7e+02 Score=38.21 Aligned_cols=25 Identities=8% Similarity=-0.168 Sum_probs=19.2
Q ss_pred CcHHHHHHHHHHHHHHHHHhhhhhH
Q 001810 149 TTDELRELLMNAMKELEVAQLNSTM 173 (1010)
Q Consensus 149 ~~~~l~~~l~~a~~~le~a~~~~~~ 173 (1010)
..+++.+.+++.++.+|..+.-++.
T Consensus 710 ~~~~~~~~~~~~~~~~e~l~~l~~~ 734 (1311)
T TIGR00606 710 KLKSTESELKKKEKRRDEMLGLAPG 734 (1311)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 4788888888888888887766443
No 157
>PRK12704 phosphodiesterase; Provisional
Probab=73.56 E-value=2.3e+02 Score=34.99 Aligned_cols=15 Identities=13% Similarity=0.049 Sum_probs=7.1
Q ss_pred HHHHHHHhcCCCchHH
Q 001810 615 IFVPIFQKIPGGSPVL 630 (1010)
Q Consensus 615 ilg~Ll~Rl~gLP~vV 630 (1010)
+...+++.+ ++++-.
T Consensus 346 lA~~lA~~l-gld~~~ 360 (520)
T PRK12704 346 LAGLMAAEL-GLDVKL 360 (520)
T ss_pred HHHHHHHHh-CcCHHH
Confidence 334444555 554444
No 158
>PRK10869 recombination and repair protein; Provisional
Probab=72.99 E-value=1.6e+02 Score=36.40 Aligned_cols=22 Identities=23% Similarity=0.223 Sum_probs=15.7
Q ss_pred CCcHHHHHHHHHHHHHHHHHhh
Q 001810 148 PTTDELRELLMNAMKELEVAQL 169 (1010)
Q Consensus 148 ~~~~~l~~~l~~a~~~le~a~~ 169 (1010)
.+..+-+|.|+--.+|+|.|.+
T Consensus 181 ~~~~~~~d~l~fql~Ei~~~~l 202 (553)
T PRK10869 181 QERAARKQLLQYQLKELNEFAP 202 (553)
T ss_pred HHHHHHHHHHHHHHHHHHhCCC
Confidence 4456667778888888877765
No 159
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=72.98 E-value=1.6e+02 Score=32.82 Aligned_cols=67 Identities=25% Similarity=0.296 Sum_probs=48.9
Q ss_pred hHHHHHhhhHHHHHHHHHhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 001810 268 GLLLAAENDIKECQANLANCETELRRLQSKKEELQKEVDRLNEVAEKAQMNALKAEEDVANIMLLAE 334 (1010)
Q Consensus 268 ~~~~~a~~~~~~~~~~l~~~~~~l~~~~~~~~~lq~~~~~l~~~~~~a~~~a~~a~~~~~~~m~~ae 334 (1010)
..+.+=+-|+-..+....+-+.||.++..+.++|+++..-|++.-.+-+-+..-+++.+-+-+.-++
T Consensus 89 ~e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~~~~e~~~~~e~e~~~i~ 155 (239)
T COG1579 89 RELRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEKNLAEAEARLEEEVAEIR 155 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455556677777788888899999999999999999999888877776666555555444443333
No 160
>TIGR00832 acr3 arsenical-resistance protein. The first protein of the ACR3 family functionally characterized was the ACR3 protein of Saccharomyces cerevisiae. It is present in the yeast plasma membrane and pumps arsenite out of the cell in response to the pmf. Similar proteins are found in bacteria, often as part of a four gene operon with an regulatory protein ArsR, a protein of unknown function ArsH, and an arsenate reductase that converts arsenate to arsenite to facilitate transport.
Probab=72.88 E-value=98 Score=35.73 Aligned_cols=67 Identities=21% Similarity=0.067 Sum_probs=37.3
Q ss_pred HHHHhh--cccChhhhhh---hhhhHHHHHHHHHHHHHHHHHHHHHhh-CCChHHHHHHHHH---HhhHHHHHHHHHH
Q 001810 881 FFMTVG--MSIDPKLLLS---NFPVITGALGLLIGGKTILVALVGRLF-GVSVISAIRTGLL---LAPGGEFAFVAFG 949 (1010)
Q Consensus 881 FFVlIG--l~Ldl~~L~~---~~~~iilillvvil~K~l~v~l~~~~~-gl~~real~IGl~---LaprG~vaLVLa~ 949 (1010)
+|++.| ++++++++.. ++..+++..+.-++.-++..|..++.+ +.+.. +.+|+. .+|.|..+.+...
T Consensus 50 ~~mmf~mgl~L~~~df~~~~~~pk~~~~~~~~qfvi~Plla~~l~~l~~~~~p~--l~~GliLv~~~Pgg~~S~v~T~ 125 (328)
T TIGR00832 50 ILMMYPPLAKVDYSALGDVFKDPKGLILSLFINWIIGPFLMFLLAWLFLRDLFE--YIAGLILLGLARCIAMVFVWNQ 125 (328)
T ss_pred HHHHHHhhhcCCHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH--HHHHHHHHHhcchHHHHHHHHH
Confidence 344555 5666666544 355555555666666666677666643 55432 555543 4566665555544
No 161
>PRK04863 mukB cell division protein MukB; Provisional
Probab=72.58 E-value=2e+02 Score=39.90 Aligned_cols=45 Identities=22% Similarity=0.263 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhchhHHHHH
Q 001810 151 DELRELLMNAMKELEVAQLNSTMFEEKAQRISEAAIALKDEAANA 195 (1010)
Q Consensus 151 ~~l~~~l~~a~~~le~a~~~~~~~e~~~~~~~~~ai~~~d~~~~~ 195 (1010)
-..|+=..+|+++|+.++-|-.-.+++...|.+.--.|+.++..|
T Consensus 289 ag~r~rk~eA~kkLe~tE~nL~rI~diL~ELe~rL~kLEkQaEkA 333 (1486)
T PRK04863 289 LELRRELYTSRRQLAAEQYRLVEMARELAELNEAESDLEQDYQAA 333 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777777777777777777666666666655555555444
No 162
>COG3329 Predicted permease [General function prediction only]
Probab=72.34 E-value=90 Score=35.95 Aligned_cols=110 Identities=17% Similarity=0.189 Sum_probs=58.7
Q ss_pred CchHHHHHHHHHhhcccccccccCchhHHHHHHHHHHHHHHHHhhcCChhHHHhchhhHHHHHHHHHHHHHHHHHHHHHH
Q 001810 626 GSPVLGYLAAGILIGPYGLSIIRHVHGTKAIAEFGVVFLLFNIGLELSVERLSSMKKYVFGLGSAQVLVTAVVVGLVAHF 705 (1010)
Q Consensus 626 LP~vVG~ILaGILLGP~gLglI~~~~~le~LaeLGLi~LLF~aGLEidl~~Lrr~~k~il~LAlv~vllt~~~Vg~la~~ 705 (1010)
+.|.+.+.+.|++..-..-.+.-+....+.+....+.-|=|-.|.++....+ ...+.-...++.+. +++.+++++
T Consensus 16 ~sP~llFf~~Gmlia~~ksdl~iP~~i~~~lslyLL~aIG~kGGveir~snl----~a~v~~~~~~~aL~-~li~~ia~f 90 (372)
T COG3329 16 LSPTLLFFILGMLIAAFKSDLEIPEAIYQALSLYLLLAIGFKGGVEIRNSNL----TAMVLPVALGVALG-FLIVFIAYF 90 (372)
T ss_pred ccchHHHHHHHHHHHHHhccccCchHHHHHHHHHHHHHHhcccceeeecCCc----chhHHHHHHHHHHH-HHHHHHHHH
Confidence 4677888889988875544443333344444444444444455555554443 33333333333332 223333333
Q ss_pred ----hcCCChHHHHHHhhhcccCc---HHHHHHHHHHcCCCC
Q 001810 706 ----VSGLPGPASIVIGNGLALSS---TAVVLQVLQERGEST 740 (1010)
Q Consensus 706 ----l~Gls~~~ALLLGaILSaTS---pAVvv~IL~elg~l~ 740 (1010)
+++.+...+..+|.....+| .+.++..|++.|...
T Consensus 91 ~l~kl~~vdtvdaaA~ag~yGsvS~~Tfaaa~t~Lee~giay 132 (372)
T COG3329 91 LLRKLPKVDTVDAAATAGTYGSVSAVTFAAAVTFLEESGIAY 132 (372)
T ss_pred HHHHccccchHHHHHHHhhccchhHHHHHHHHHHHHHcCccH
Confidence 34666666666666555444 456788889988643
No 163
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=72.04 E-value=29 Score=30.79 Aligned_cols=51 Identities=20% Similarity=0.341 Sum_probs=44.3
Q ss_pred hhhHHHHHhhhHHHHHHHHHhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 001810 266 EDGLLLAAENDIKECQANLANCETELRRLQSKKEELQKEVDRLNEVAEKAQ 316 (1010)
Q Consensus 266 ~~~~~~~a~~~~~~~~~~l~~~~~~l~~~~~~~~~lq~~~~~l~~~~~~a~ 316 (1010)
|-.|-...+++++.|++...+++..|+.-..+-.+|+.||++|.+--+..+
T Consensus 9 EirakQ~~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~r 59 (61)
T PF08826_consen 9 EIRAKQAIQEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEELR 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 445667789999999999999999999999999999999999988766544
No 164
>PRK02224 chromosome segregation protein; Provisional
Probab=71.74 E-value=3.1e+02 Score=35.56 Aligned_cols=45 Identities=27% Similarity=0.354 Sum_probs=24.2
Q ss_pred cHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhchhHHHH
Q 001810 150 TDELRELLMNAMKELEVAQLNSTMFEEKAQRISEAAIALKDEAAN 194 (1010)
Q Consensus 150 ~~~l~~~l~~a~~~le~a~~~~~~~e~~~~~~~~~ai~~~d~~~~ 194 (1010)
.++|++.|..-..++......-..++++.++..+..-.+++++..
T Consensus 323 ~~el~~~l~~~~~~l~~~~~~~e~~~~~~~~le~~~~~l~~~~~~ 367 (880)
T PRK02224 323 DEELRDRLEECRVAAQAHNEEAESLREDADDLEERAEELREEAAE 367 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555554444444444444456666666666666555555543
No 165
>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.
Probab=71.36 E-value=1.2e+02 Score=34.25 Aligned_cols=18 Identities=39% Similarity=0.302 Sum_probs=10.0
Q ss_pred cccHHHHHHHHHHhhcCC
Q 001810 347 VNDAEIALQRAEKSLSNS 364 (1010)
Q Consensus 347 ~~~~e~~l~~~~~~~~~~ 364 (1010)
+..++..|++++..+...
T Consensus 188 ~~~~~~~l~~a~~~l~~~ 205 (327)
T TIGR02971 188 VKSALEAVQQAEALLELT 205 (327)
T ss_pred HHHHHHHHHHHHHHHhcC
Confidence 344555666666666544
No 166
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=70.94 E-value=1.9e+02 Score=37.71 Aligned_cols=167 Identities=25% Similarity=0.358 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhchhHHHHHHHhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001810 151 DELRELLMNAMKELEVAQLNSTMFEEKAQRISEAAIALKDEAANAWNNVNVTLDMVHEIVNEECIAKEAVHKATMALSLA 230 (1010)
Q Consensus 151 ~~l~~~l~~a~~~le~a~~~~~~~e~~~~~~~~~ai~~~d~~~~~~~~~~~~~~~~~~~~~~e~~a~~~~~~~~~~~~~a 230 (1010)
+++|+.|-.--.-.|-|++..+|=||+|...-.---+++.+.+.--.|++ |+.+|..-|-.--.+.-+..+-
T Consensus 300 e~~k~emad~ad~iEmaTldKEmAEERaesLQ~eve~lkEr~deletdlE--------ILKaEmeekG~~~~~~ss~qfk 371 (1243)
T KOG0971|consen 300 ERYKEEMADTADAIEMATLDKEMAEERAESLQQEVEALKERVDELETDLE--------ILKAEMEEKGSDGQAASSYQFK 371 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHhcCCCCcccchHHHH
Q ss_pred HHHHHHH--HHHhhhhccCCCCCCCCcccccCCCCcchhhHHHHHhhhHHHHHHHHHhhHHHHHHHhhhHHHHHHHHHHH
Q 001810 231 EARLQVA--IESLQDVKQEDDYPEGSTEDDAKSDGKEEDGLLLAAENDIKECQANLANCETELRRLQSKKEELQKEVDRL 308 (1010)
Q Consensus 231 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~l~~~~~~l~~~~~~~~~lq~~~~~l 308 (1010)
+...|-+ .|++=-.| .....++-|+...+..|..-..|+..|...||-|+.++|.+
T Consensus 372 qlEqqN~rLKdalVrLR----------------------DlsA~ek~d~qK~~kelE~k~sE~~eL~r~kE~Lsr~~d~a 429 (1243)
T KOG0971|consen 372 QLEQQNARLKDALVRLR----------------------DLSASEKQDHQKLQKELEKKNSELEELRRQKERLSRELDQA 429 (1243)
T ss_pred HHHHHHHHHHHHHHHHH----------------------hcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHH---HHHhhhHHHHH-----------HHHHHHHHHHHHHHHHhhhccc
Q 001810 309 NEVAEKAQ---MNALKAEEDVA-----------NIMLLAEQAVAFEIEATQRVND 349 (1010)
Q Consensus 309 ~~~~~~a~---~~a~~a~~~~~-----------~~m~~ae~av~~e~ea~~~~~~ 349 (1010)
.-+-.--| .+|+-|||-|. .+|+|=|.- .+|||..-+|+
T Consensus 430 Es~iadlkEQVDAAlGAE~MV~qLtdknlnlEekVklLeetv--~dlEalee~~E 482 (1243)
T KOG0971|consen 430 ESTIADLKEQVDAALGAEEMVEQLTDKNLNLEEKVKLLEETV--GDLEALEEMNE 482 (1243)
T ss_pred HHHHHHHHHHHHHhhcHHHHHHHHHhhccCHHHHHHHHHHHH--HHHHHHHHHHH
No 167
>PHA02557 22 prohead core protein; Provisional
Probab=70.90 E-value=1.9e+02 Score=32.73 Aligned_cols=59 Identities=19% Similarity=0.248 Sum_probs=43.5
Q ss_pred HHHHHHHHHhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 001810 277 IKECQANLANCETELRRLQSKKEELQKEVDRLNEVAEKAQMNALKAEEDVANIMLLAEQ 335 (1010)
Q Consensus 277 ~~~~~~~l~~~~~~l~~~~~~~~~lq~~~~~l~~~~~~a~~~a~~a~~~~~~~m~~ae~ 335 (1010)
|-+.+..|.+++.++.++-++.-+|++.++.+..-.--+..-..-+|-..--++.|+|.
T Consensus 143 V~em~~~L~E~e~~~~~l~~en~~l~e~i~~~~r~~i~~e~t~gLtdsQkeKv~~L~Eg 201 (271)
T PHA02557 143 VAEMEEELDEMEEELNELFEENVALEEYINEVKREVILSEVTKDLTESQKEKVASLAEG 201 (271)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHHHhc
Confidence 45567788888888888888888888887777666655666666667666677777774
No 168
>PRK04125 murein hydrolase regulator LrgA; Provisional
Probab=70.86 E-value=42 Score=34.39 Aligned_cols=99 Identities=15% Similarity=0.265 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCc---hHHHHHHHHHhhcccccccccCchhH-----HHHHHHHHHHHHHHHhhcCCh
Q 001810 603 LFDVLWLLLASVIFVPIFQKIPGGS---PVLGYLAAGILIGPYGLSIIRHVHGT-----KAIAEFGVVFLLFNIGLELSV 674 (1010)
Q Consensus 603 Ll~illLLl~A~ilg~Ll~Rl~gLP---~vVG~ILaGILLGP~gLglI~~~~~l-----e~LaeLGLi~LLF~aGLEidl 674 (1010)
+.+++++ ++..++|.+..++.++| +++|+++.=+++. ++.+. .+.+ -++.++.+.|+=-.+|.=..+
T Consensus 10 l~ql~il-l~~~~lGe~i~~ll~lPiPGsViGMlLL~l~L~---~~~vk-~~~v~~~a~~LL~~m~LfFVPagVGim~~~ 84 (141)
T PRK04125 10 LHQAFIF-AAIMLISNIIASFLPIPMPASVIGLVLLFVLLC---TKVVK-LEQVESLGTALTNNIGFLFVPSGISVINSL 84 (141)
T ss_pred HHHHHHH-HHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHH---hCCcC-HHHHHHHHHHHHHHHHHHHhhhHhHHHHhH
Confidence 3444444 44445566666654655 4566665533333 23232 2222 234445555555567777788
Q ss_pred hHHHhchhhHHHHHHHHHHHHHHHHHHHHHHh
Q 001810 675 ERLSSMKKYVFGLGSAQVLVTAVVVGLVAHFV 706 (1010)
Q Consensus 675 ~~Lrr~~k~il~LAlv~vllt~~~Vg~la~~l 706 (1010)
+.++.++..++...+++.+++.++.|++..++
T Consensus 85 ~ll~~~~~~Il~~ivvSTllvl~vtg~v~~~l 116 (141)
T PRK04125 85 GVMSQYPVQIIGVIIVATILLLACTGLFSQFI 116 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888777777777766666666655554
No 169
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=70.82 E-value=1.7e+02 Score=32.13 Aligned_cols=152 Identities=18% Similarity=0.204 Sum_probs=90.7
Q ss_pred CcHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhchhHHHHHHHhhhHhHHHHHH---HHHHHHHHHHHH----H
Q 001810 149 TTDELRELLMNAMKELEVAQLNSTMFEEKAQRISEAAIALKDEAANAWNNVNVTLDMVHE---IVNEECIAKEAV----H 221 (1010)
Q Consensus 149 ~~~~l~~~l~~a~~~le~a~~~~~~~e~~~~~~~~~ai~~~d~~~~~~~~~~~~~~~~~~---~~~~e~~a~~~~----~ 221 (1010)
++|+.++-+..+..+|+.+.---+-.|+.+......---+.|+-..+-..+..+...+.+ -+.+---+-..+ .
T Consensus 9 eld~~~~~~~~~~~~l~~~~~~~~~aE~e~~~l~rri~~lE~~le~~eerL~~~~~kL~~~e~~~de~er~~k~lE~r~~ 88 (237)
T PF00261_consen 9 ELDEAEERLEEAEEKLKEAEKRAEKAEAEVASLQRRIQLLEEELERAEERLEEATEKLEEAEKRADESERARKVLENREQ 88 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 367888888999999999998888999999888888888888777776655543333222 221111111111 1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCcccccCCCCcchhhHHHHHhhhHHHHHHHHHhhHHHHHHHhhhHHHH
Q 001810 222 KATMALSLAEARLQVAIESLQDVKQEDDYPEGSTEDDAKSDGKEEDGLLLAAENDIKECQANLANCETELRRLQSKKEEL 301 (1010)
Q Consensus 222 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~l~~~~~~l~~~~~~~~~l 301 (1010)
..-.-+..-|.++..|...++-+ +.-+.-+..-+...+..|..+|..+.....+..+|
T Consensus 89 ~~eeri~~lE~~l~ea~~~~ee~----------------------e~k~~E~~rkl~~~E~~Le~aEeR~e~~E~ki~eL 146 (237)
T PF00261_consen 89 SDEERIEELEQQLKEAKRRAEEA----------------------ERKYEEVERKLKVLEQELERAEERAEAAESKIKEL 146 (237)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHH----------------------HHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----------------------HHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHH
Confidence 12223344445555554444442 12333444455566667777777777777777777
Q ss_pred HHHHHHHHHHHHHHHHHHhhh
Q 001810 302 QKEVDRLNEVAEKAQMNALKA 322 (1010)
Q Consensus 302 q~~~~~l~~~~~~a~~~a~~a 322 (1010)
+.++..+......-+..--++
T Consensus 147 E~el~~~~~~lk~lE~~~~~~ 167 (237)
T PF00261_consen 147 EEELKSVGNNLKSLEASEEKA 167 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhhhhh
Confidence 777777766655444443333
No 170
>PF13194 DUF4010: Domain of unknown function (DUF4010)
Probab=70.24 E-value=1.7e+02 Score=31.88 Aligned_cols=32 Identities=19% Similarity=0.047 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHhchhHHH-HHHHHHHH
Q 001810 825 SANTLLVILGTSLLTARAGLSMAL-GAFLAGLL 856 (1010)
Q Consensus 825 l~ltLll~f~~~llAe~lGlSgvL-GAFiAGLi 856 (1010)
..+..++.+...+..+++|-.++. .+++.|+.
T Consensus 132 a~l~~~i~~~~~~~~~~~G~~Gl~~~a~isGl~ 164 (211)
T PF13194_consen 132 ALLFAVILLLSRAAQRWFGDSGLYALAAISGLA 164 (211)
T ss_pred HHHHHHHHHHHHHHHHHHChhhHHHHHHHHHhh
Confidence 334555566677778889888776 56666664
No 171
>PRK03598 putative efflux pump membrane fusion protein; Provisional
Probab=69.47 E-value=47 Score=37.73 Aligned_cols=93 Identities=19% Similarity=0.240 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHH--HHHHHHHHhchhHHHHHHHhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001810 152 ELRELLMNAMKELEVAQLNSTMFEEKA--QRISEAAIALKDEAANAWNNVNVTLDMVHEIVNEECIAKEAVHKATMALSL 229 (1010)
Q Consensus 152 ~l~~~l~~a~~~le~a~~~~~~~e~~~--~~~~~~ai~~~d~~~~~~~~~~~~~~~~~~~~~~e~~a~~~~~~~~~~~~~ 229 (1010)
+++.-|..+..+++.++.+...++... ++|.+.-..+ +.+...-......++..+...++-.+.+.....+...+..
T Consensus 78 ~~~~~l~~~~a~l~~~~~~l~~~~~~~~~~~i~~~~~~l-~~ak~~l~~a~~~~~r~~~L~~~g~vs~~~~~~~~~~~~~ 156 (331)
T PRK03598 78 PYENALMQAKANVSVAQAQLDLMLAGYRDEEIAQARAAV-KQAQAAYDYAQNFYNRQQGLWKSRTISANDLENARSSRDQ 156 (331)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
Confidence 444555555555555554433332211 1222111111 2223333334445556666777777777777778888888
Q ss_pred HHHHHHHHHHHhhhhc
Q 001810 230 AEARLQVAIESLQDVK 245 (1010)
Q Consensus 230 a~~~~~~~~~~~~~~~ 245 (1010)
|+++++.|...+...+
T Consensus 157 a~~~~~~a~~~~~~~~ 172 (331)
T PRK03598 157 AQATLKSAQDKLSQYR 172 (331)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 8888888777776643
No 172
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=69.34 E-value=2.7e+02 Score=37.08 Aligned_cols=163 Identities=18% Similarity=0.258 Sum_probs=78.6
Q ss_pred CcHHHHHHHHHHHHHHHHHhhhhhH-----HHHHHHHHHHHHHhchhHHH---HHHHhhhHhHHHHHHHHH---------
Q 001810 149 TTDELRELLMNAMKELEVAQLNSTM-----FEEKAQRISEAAIALKDEAA---NAWNNVNVTLDMVHEIVN--------- 211 (1010)
Q Consensus 149 ~~~~l~~~l~~a~~~le~a~~~~~~-----~e~~~~~~~~~ai~~~d~~~---~~~~~~~~~~~~~~~~~~--------- 211 (1010)
.+..+++.|+--+.++-=|.+|.-- .|++-+++=|..=-++++-. ......++.+..|+.-+.
T Consensus 256 ~~e~~~~~l~~Lk~k~~W~~V~~~~~ql~~~~~~i~~~qek~~~l~~ki~~~~~k~~~~r~k~teiea~i~~~~~e~~~~ 335 (1074)
T KOG0250|consen 256 QLEDLKENLEQLKAKMAWAWVNEVERQLNNQEEEIKKKQEKVDTLQEKIEEKQGKIEEARQKLTEIEAKIGELKDEVDAQ 335 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhh
Confidence 3888888888877777777766532 23333333333333333332 333333444444444332
Q ss_pred -HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCcccccCCCCcchhhHHHHHhhhH-HHHHHHHHhhH
Q 001810 212 -EEC-IAKEAVHKATMALSLAEARLQVAIESLQDVKQEDDYPEGSTEDDAKSDGKEEDGLLLAAENDI-KECQANLANCE 288 (1010)
Q Consensus 212 -~e~-~a~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~-~~~~~~l~~~~ 288 (1010)
+|+ .|++.++...-...-.+.....+.-..+..|..+| .-+..+.-++++. ++.+..+.+.|
T Consensus 336 d~Ei~~~r~~~~~~~re~~~~~~~~~~~~n~i~~~k~~~d---------------~l~k~I~~~~~~~~~~~~~~~~e~e 400 (1074)
T KOG0250|consen 336 DEEIEEARKDLDDLRREVNDLKEEIREIENSIRKLKKEVD---------------RLEKQIADLEKQTNNELGSELEERE 400 (1074)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHhhhhhhHHHHH
Confidence 122 23344444444444444444444444444321111 1122333333333 55555556666
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 001810 289 TELRRLQSKKEELQKEVDRLNEVAEKAQMNALKAEEDV 326 (1010)
Q Consensus 289 ~~l~~~~~~~~~lq~~~~~l~~~~~~a~~~a~~a~~~~ 326 (1010)
.++..|+...+.+|..+.+|.+.-+.-+-++..-+|.-
T Consensus 401 ~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~~~~ee~ 438 (1074)
T KOG0250|consen 401 NKLEQLKKEVEKLEEQINSLREELNEVKEKAKEEEEEK 438 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 66666666666666666666555555555555444444
No 173
>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea. Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane
Probab=69.28 E-value=45 Score=38.39 Aligned_cols=99 Identities=16% Similarity=0.106 Sum_probs=51.0
Q ss_pred HHHHHHHcCCC-chhHHHHHHHHhH-HHHHHHHH-HHHhhcccChhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhCCC
Q 001810 850 AFLAGLLLAET-EFSLQVESDIAPY-RGLLLGLF-FMTVGMSIDPKLLLSNFPVITGALGLLIGGKTILVALVGRLFGVS 926 (1010)
Q Consensus 850 AFiAGLiLs~~-~~~~~L~e~l~~i-~~~f~PLF-FVlIGl~Ldl~~L~~~~~~iilillvvil~K~l~v~l~~~~~gl~ 926 (1010)
..+.|.++++. -+..+-.+.+..+ ..+++|.+ |..++-..+...+.. ++.+.+..++..+.=++..++..++++.+
T Consensus 12 ii~~G~~~~~~~~l~~~~~~~ls~lv~~~~lP~liF~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (385)
T PF03547_consen 12 IILLGYLLGRFGILDPEASKGLSKLVFNVFLPALIFSSIANTDTLEDLLS-LWFIPVFAFIIFILGLLLGFLLSRLFRLP 90 (385)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhh-hHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 34445555543 2344445556665 56888876 777776665655544 33333333333333345555556666666
Q ss_pred hHHHH--HHHHHHhhHHHHHHHHHH
Q 001810 927 VISAI--RTGLLLAPGGEFAFVAFG 949 (1010)
Q Consensus 927 ~real--~IGl~LaprG~vaLVLa~ 949 (1010)
.+.+. ..+...+--|.+++-+..
T Consensus 91 ~~~~~~~~~~~~~~N~~~lglpi~~ 115 (385)
T PF03547_consen 91 KEWRGVFVLAASFGNTGFLGLPILQ 115 (385)
T ss_pred cccceEEEecccCCcchhhHHHHHH
Confidence 55443 223334445555554443
No 174
>PRK10263 DNA translocase FtsK; Provisional
Probab=68.96 E-value=1.4e+02 Score=40.64 Aligned_cols=11 Identities=18% Similarity=0.371 Sum_probs=5.3
Q ss_pred hHHHHHHHHHH
Q 001810 845 SMALGAFLAGL 855 (1010)
Q Consensus 845 SgvLGAFiAGL 855 (1010)
.|++|.++.++
T Consensus 143 GGIIG~lLs~l 153 (1355)
T PRK10263 143 GGVIGSLLSTT 153 (1355)
T ss_pred cchHHHHHHHH
Confidence 44555554443
No 175
>TIGR03136 malonate_biotin Na+-transporting malonate decarboxylase, carboxybiotin decarboxylase subunit. Malonate decarboxylase can be a soluble enzyme, or a sodium ion-translocating with additional membrane-bound components. Members of this protein family are integral membrane proteins required to couple decarboxylation to sodium ion export. This family belongs to a broader family, TIGR01109 of sodium ion-translocating decarboxylase beta subunits.
Probab=68.73 E-value=67 Score=37.76 Aligned_cols=107 Identities=14% Similarity=0.127 Sum_probs=65.4
Q ss_pred HHHHHHHHHHHhhcccChhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHhhHHHHHHHHHHHHHh
Q 001810 874 RGLLLGLFFMTVGMSIDPKLLLSNFPVITGALGLLIGGKTILVALVGRLFGVSVISAIRTGLLLAPGGEFAFVAFGEAVN 953 (1010)
Q Consensus 874 ~~~f~PLFFVlIGl~Ldl~~L~~~~~~iilillvvil~K~l~v~l~~~~~gl~~real~IGl~LaprG~vaLVLa~iAls 953 (1010)
.+++=|+.|+-+|...|+.-+..+++..++.-+..-++-|+ +++.....|++.+|+..+|..=+.=|..++.+.+.-.
T Consensus 104 ~gl~P~LIFlGIGAMtDFgpllanP~~~ll~gaaAQ~GiF~-t~~~A~~lGF~~~eAAsIgIIGgADGPTaIf~s~kLA- 181 (399)
T TIGR03136 104 NSLVACILFFGIGAMSDISFILARPWASITVALFAEMGTFA-TLVIGYYCGLTPGEAAAVGTIGGADGPMVLFASLILA- 181 (399)
T ss_pred cccHHHHHHHhccHHhcchHHHhChHHHHHHHHHHHhhHHH-HHHHHHHcCCCHHHhhHHhhcccCCccHHHHHHHhhh-
Confidence 36788889999999999998877654433322333444433 3445556799999999999877777777777654221
Q ss_pred CCCCChhh-HHHHHHHHHHHHHHHHHHHHh
Q 001810 954 QVCFQPHT-VFLIPNGISIYLQLIMIFFFF 982 (1010)
Q Consensus 954 ~GiIs~~~-lVvlvVVlS~IItPiL~~l~~ 982 (1010)
-.++.+-. .-.....+.=++-|++.|+.-
T Consensus 182 p~Llg~IaVAAYsYMaLVPiiqPpimklLt 211 (399)
T TIGR03136 182 KDLFVPISIIAYLYLSLTYAGYPYLIKLLV 211 (399)
T ss_pred hHhHHHHHHHHHHHHHHHhcccchHHHhhc
Confidence 11222211 122233333356677777743
No 176
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=68.28 E-value=99 Score=35.47 Aligned_cols=22 Identities=14% Similarity=0.111 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhhh
Q 001810 151 DELRELLMNAMKELEVAQLNST 172 (1010)
Q Consensus 151 ~~l~~~l~~a~~~le~a~~~~~ 172 (1010)
++++.-+..|+.+++.|+.+-.
T Consensus 82 ~~~~~~l~~a~a~l~~a~a~l~ 103 (346)
T PRK10476 82 RPYELTVAQAQADLALADAQIM 103 (346)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4566778888888887775543
No 177
>TIGR00840 b_cpa1 sodium/hydrogen exchanger 3. This model is specific for the eukaryotic members members of this family.
Probab=67.98 E-value=74 Score=39.45 Aligned_cols=73 Identities=12% Similarity=0.064 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHhhcccChhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHh---------hCCChHHHHHHHHHHhhHHHHH
Q 001810 874 RGLLLGLFFMTVGMSIDPKLLLSNFPVITGALGLLIGGKTILVALVGRL---------FGVSVISAIRTGLLLAPGGEFA 944 (1010)
Q Consensus 874 ~~~f~PLFFVlIGl~Ldl~~L~~~~~~iilillvvil~K~l~v~l~~~~---------~gl~~real~IGl~LaprG~va 944 (1010)
..+++|..-.-.|.+++...+..+++.++.+.++.++.-.+.+....++ .++++.+++.+|..+++-..++
T Consensus 69 ~~~~LPpIlFe~g~~l~~~~f~~n~~~Il~lAv~Gvlit~~~ig~~l~~~~~~~~~~~~~l~~~~allfGAiiSaTDPVA 148 (559)
T TIGR00840 69 FLYLLPPIVLDAGYFMPQRNFFENLGSILIFAVVGTLINAFVIGLSLYGICLIGGFGSIDIGLLDNLLFGSLISAVDPVA 148 (559)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCHHHHHHHhHHhcCCchHH
Confidence 4456777777789999999998877665544444443333333222221 2568999999999888877776
Q ss_pred HH
Q 001810 945 FV 946 (1010)
Q Consensus 945 LV 946 (1010)
++
T Consensus 149 Vl 150 (559)
T TIGR00840 149 VL 150 (559)
T ss_pred HH
Confidence 54
No 178
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=67.56 E-value=72 Score=36.00 Aligned_cols=40 Identities=28% Similarity=0.321 Sum_probs=25.3
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001810 200 NVTLDMVHEIVNEECIAKEAVHKATMALSLAEARLQVAIE 239 (1010)
Q Consensus 200 ~~~~~~~~~~~~~e~~a~~~~~~~~~~~~~a~~~~~~~~~ 239 (1010)
...++..+...++-.+.+..++++...+.-|+++++.+..
T Consensus 128 ~~~~~r~~~L~~~g~is~~~~~~a~~~~~~a~~~l~~~~~ 167 (334)
T TIGR00998 128 ELDLRRRVPLFKKGLISREELDHARKALLSAKAALNAAIQ 167 (334)
T ss_pred HHHHHHHHHHHHCCCcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556666666666666676677677666666665544
No 179
>KOG1307 consensus K+-dependent Ca2+/Na+ exchanger NCKX1 and related proteins [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=67.42 E-value=9.2 Score=45.64 Aligned_cols=46 Identities=28% Similarity=0.586 Sum_probs=36.3
Q ss_pred hcccCCccccccccccCCCCccchhhHHHHHHHHHHhhc------hhHHHHHHHHhhh
Q 001810 487 QKKSSRFFPASFFSSAVDGTESTQASIFQGLMEYARKQL------PKLVLGFLLFGAG 538 (1010)
Q Consensus 487 ~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~g~~~~~~g 538 (1010)
.-+|.||||.+|++|. .=-..|.-||--.-.|. |.-|.|+..++||
T Consensus 418 kp~~rkfF~vTFigSI------lWIA~fSYLMVWwa~~iGeT~gIp~eIMGLTiLAAG 469 (588)
T KOG1307|consen 418 KPRSRKFFPVTFIGSI------LWIAAFSYLMVWWANIIGETLGIPDEIMGLTILAAG 469 (588)
T ss_pred CccccceeehHHHHHH------HHHHHHHHHHHHHHHHcccccCCCHHHhhhhhhhcC
Confidence 3457789999999987 44566787887666653 7889999999999
No 180
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=67.37 E-value=2.8e+02 Score=34.41 Aligned_cols=143 Identities=19% Similarity=0.268 Sum_probs=82.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhchhHHHHHHHhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001810 151 DELRELLMNAMKELEVAQLNSTMFEEKAQRISEAAIALKDEAANAWNNVNVTLDMVHEIVNEECIAKEAVHKATMALSLA 230 (1010)
Q Consensus 151 ~~l~~~l~~a~~~le~a~~~~~~~e~~~~~~~~~ai~~~d~~~~~~~~~~~~~~~~~~~~~~e~~a~~~~~~~~~~~~~a 230 (1010)
+.|..-.+.....++.-...-+...+.-+++.+..-.++++-..-| +.++..=.+|..|++.+++-.-.++-.
T Consensus 354 ~~l~~~~~~~~~~i~~~~~~yS~i~~~l~~~~~~l~~ie~~q~~~~-------~~l~~L~~dE~~Ar~~l~~~~~~l~~i 426 (560)
T PF06160_consen 354 KELEKRYEDLEERIEEQQVPYSEIQEELEEIEEQLEEIEEEQEEIN-------ESLQSLRKDEKEAREKLQKLKQKLREI 426 (560)
T ss_pred HHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444455566666666665554444433332 444556678888888887544444444
Q ss_pred HHHHHHHHHHhhhhccCCCCCCCCcccccCCCCcchhhHHHHHhhhHHHHHHHHHhhHHHHHHHhhhHHHHHHHHHHHHH
Q 001810 231 EARLQVAIESLQDVKQEDDYPEGSTEDDAKSDGKEEDGLLLAAENDIKECQANLANCETELRRLQSKKEELQKEVDRLNE 310 (1010)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~l~~~~~~l~~~~~~~~~lq~~~~~l~~ 310 (1010)
+-+++. ..-|.-+.+ =...+..+.+.|.+....|.+---.+..++....+.+..|++|.+
T Consensus 427 kR~lek-----------~nLPGlp~~---------y~~~~~~~~~~i~~l~~~L~~~pinm~~v~~~l~~a~~~v~~L~~ 486 (560)
T PF06160_consen 427 KRRLEK-----------SNLPGLPED---------YLDYFFDVSDEIEELSDELNQVPINMDEVNKQLEEAEDDVETLEE 486 (560)
T ss_pred HHHHHH-----------cCCCCCCHH---------HHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHH
Confidence 443332 133333331 125677888888888888876666667777777777777777777
Q ss_pred HHHHHHHHHh
Q 001810 311 VAEKAQMNAL 320 (1010)
Q Consensus 311 ~~~~a~~~a~ 320 (1010)
.+..-=..|.
T Consensus 487 ~t~~li~~A~ 496 (560)
T PF06160_consen 487 KTEELIDNAT 496 (560)
T ss_pred HHHHHHHHHH
Confidence 6654443333
No 181
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=67.20 E-value=3.2e+02 Score=33.97 Aligned_cols=34 Identities=24% Similarity=0.367 Sum_probs=17.5
Q ss_pred HHHHhhHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q 001810 282 ANLANCETELRRLQSKKEELQKEVDRLNEVAEKA 315 (1010)
Q Consensus 282 ~~l~~~~~~l~~~~~~~~~lq~~~~~l~~~~~~a 315 (1010)
..|.+|..+++..+.+...+|.|.+.|.+-...+
T Consensus 262 ~rLk~~~~~~~~~~~~~~~~~~e~e~LkeqLr~~ 295 (546)
T PF07888_consen 262 QRLKETVVQLKQEETQAQQLQQENEALKEQLRSA 295 (546)
T ss_pred HHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHH
Confidence 4455555555544444455555555555544443
No 182
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=66.61 E-value=1.2e+02 Score=31.37 Aligned_cols=100 Identities=24% Similarity=0.315 Sum_probs=73.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCC-----Cc---cccc---CC----------CCcchhhHHHHHhhh
Q 001810 218 EAVHKATMALSLAEARLQVAIESLQDVKQEDDYPEG-----ST---EDDA---KS----------DGKEEDGLLLAAEND 276 (1010)
Q Consensus 218 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~-----~~---~~~~---~~----------~~~~~~~~~~~a~~~ 276 (1010)
|++|.--++|.++...++-+.+.++..++....+|. +. .... ++ -.++-++|...=+..
T Consensus 23 e~L~~~i~~l~~~~~e~~~~~~tl~~lk~~~~g~E~LVpvGag~fv~~kv~~~~kviV~iGsg~~ae~~~~eAie~l~k~ 102 (145)
T COG1730 23 ESLQAQIAALNAAISELQTAIETLENLKGAGEGKEVLVPVGAGLFVKAKVKDMDKVIVSIGSGYYAEKSADEAIEFLKKR 102 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEEEcCCCceEEEEeccCceEEEEcCCceeeeecHHHHHHHHHHH
Confidence 456666678899999999999999988877753343 11 1111 11 124557888888888
Q ss_pred HHHHHHHHHhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Q 001810 277 IKECQANLANCETELRRLQSKKEELQKEVDRLNEVAEKAQM 317 (1010)
Q Consensus 277 ~~~~~~~l~~~~~~l~~~~~~~~~lq~~~~~l~~~~~~a~~ 317 (1010)
+.+...++.+++..|..+-.+.++++++..++...+..+|.
T Consensus 103 ~~~l~~~~~~l~~~l~~l~~~~~~l~~~~q~~~q~~~~~~~ 143 (145)
T COG1730 103 IEELEKAIEKLQQALAELAQRIEQLEQEAQQLQQKQAAAQK 143 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 88888888999999999999999999988888777766654
No 183
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=66.40 E-value=2.5e+02 Score=32.47 Aligned_cols=39 Identities=36% Similarity=0.371 Sum_probs=22.6
Q ss_pred hHHHHHhhhHHHHHHHHHhhHHHHHHHhhhHHHHHHHHH
Q 001810 268 GLLLAAENDIKECQANLANCETELRRLQSKKEELQKEVD 306 (1010)
Q Consensus 268 ~~~~~a~~~~~~~~~~l~~~~~~l~~~~~~~~~lq~~~~ 306 (1010)
..++.++.++.+.+.++.+-+.++.+++....+++.+..
T Consensus 196 ~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~~~ 234 (423)
T TIGR01843 196 LELLELERERAEAQGELGRLEAELEVLKRQIDELQLERQ 234 (423)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344456666666666666666666666555555555443
No 184
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=65.82 E-value=1.9e+02 Score=32.72 Aligned_cols=38 Identities=21% Similarity=0.344 Sum_probs=16.5
Q ss_pred hHHHHHhhhHHHHHHHHHhhHHHHHHHhhhHHHHHHHH
Q 001810 268 GLLLAAENDIKECQANLANCETELRRLQSKKEELQKEV 305 (1010)
Q Consensus 268 ~~~~~a~~~~~~~~~~l~~~~~~l~~~~~~~~~lq~~~ 305 (1010)
+.+..++.++++++....+|..+|.++..+-..++|.+
T Consensus 214 EeL~~~Eke~~e~~~~i~e~~~rl~~l~~~~~~l~k~~ 251 (269)
T PF05278_consen 214 EELKQKEKEVKEIKERITEMKGRLGELEMESTRLSKTI 251 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444444433
No 185
>COG3329 Predicted permease [General function prediction only]
Probab=65.55 E-value=56 Score=37.53 Aligned_cols=110 Identities=20% Similarity=0.146 Sum_probs=61.9
Q ss_pred hhHHHHHHHHHHHcCCCchhHHHHHHHHhHHHHHHHHHHHHhhc----ccChhhhhhhhhhHHHHHHHHHHHHHHHHHHH
Q 001810 844 LSMALGAFLAGLLLAETEFSLQVESDIAPYRGLLLGLFFMTVGM----SIDPKLLLSNFPVITGALGLLIGGKTILVALV 919 (1010)
Q Consensus 844 lSgvLGAFiAGLiLs~~~~~~~L~e~l~~i~~~f~PLFFVlIGl----~Ldl~~L~~~~~~iilillvvil~K~l~v~l~ 919 (1010)
+||.+.-|+.|++++-.+.+.++.+.+... +.-...+.+|. .+.-+.+.......+..+.+.++.-++..|+.
T Consensus 16 ~sP~llFf~~Gmlia~~ksdl~iP~~i~~~---lslyLL~aIG~kGGveir~snl~a~v~~~~~~~aL~~li~~ia~f~l 92 (372)
T COG3329 16 LSPTLLFFILGMLIAAFKSDLEIPEAIYQA---LSLYLLLAIGFKGGVEIRNSNLTAMVLPVALGVALGFLIVFIAYFLL 92 (372)
T ss_pred ccchHHHHHHHHHHHHHhccccCchHHHHH---HHHHHHHHHhcccceeeecCCcchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 467777788888877544333333333222 22222334454 44444443333334444455555566667777
Q ss_pred HHhhCCChHHHHHHHHHHhhHHHHHHHHHHHHH-hCCC
Q 001810 920 GRLFGVSVISAIRTGLLLAPGGEFAFVAFGEAV-NQVC 956 (1010)
Q Consensus 920 ~~~~gl~~real~IGl~LaprG~vaLVLa~iAl-s~Gi 956 (1010)
.++.+++..++..++-..+....+++..+..-+ +.|+
T Consensus 93 ~kl~~vdtvdaaA~ag~yGsvS~~Tfaaa~t~Lee~gi 130 (372)
T COG3329 93 RKLPKVDTVDAAATAGTYGSVSAVTFAAAVTFLEESGI 130 (372)
T ss_pred HHccccchHHHHHHHhhccchhHHHHHHHHHHHHHcCc
Confidence 777899999999888666666666665554333 3444
No 186
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=65.21 E-value=28 Score=40.32 Aligned_cols=50 Identities=28% Similarity=0.358 Sum_probs=40.1
Q ss_pred CCcchhhHHHHHhhhHHHHHHHHHhhHHHHHHHhhhHHHHHHHHHHHHHH
Q 001810 262 DGKEEDGLLLAAENDIKECQANLANCETELRRLQSKKEELQKEVDRLNEV 311 (1010)
Q Consensus 262 ~~~~~~~~~~~a~~~~~~~~~~l~~~~~~l~~~~~~~~~lq~~~~~l~~~ 311 (1010)
++.-....+..++++..+.++.|.+++.+|..++.+..+||++.+.....
T Consensus 215 ~V~P~~~~l~~a~~~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e 264 (344)
T PF12777_consen 215 EVEPKRQKLEEAEAELEEAEEQLAEKQAELAELEEKLAALQKEYEEAQKE 264 (344)
T ss_dssp CCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66667788888888888888888888888888888888888887765433
No 187
>PRK09903 putative transporter YfdV; Provisional
Probab=64.70 E-value=1.2e+02 Score=34.37 Aligned_cols=108 Identities=12% Similarity=0.069 Sum_probs=60.4
Q ss_pred CCchHHHHHHHHHhhcccccccccC-chhHHHHHHHHHHHHHHHHhhcCChhHHHhchhhHHHHHHHHHHHHHHHHHHHH
Q 001810 625 GGSPVLGYLAAGILIGPYGLSIIRH-VHGTKAIAEFGVVFLLFNIGLELSVERLSSMKKYVFGLGSAQVLVTAVVVGLVA 703 (1010)
Q Consensus 625 gLP~vVG~ILaGILLGP~gLglI~~-~~~le~LaeLGLi~LLF~aGLEidl~~Lrr~~k~il~LAlv~vllt~~~Vg~la 703 (1010)
+-|.+++ .++|+++.-.++.+-.. .+.++.++....++-||..|..+....++..+ ......+.-.++.++++ +..
T Consensus 172 ~nP~iia-~~~gl~~~l~~i~lP~~i~~~l~~lg~~~~PlaL~~iG~~L~~~~~~~~~-~~~~~~~~Kli~~P~i~-~~~ 248 (314)
T PRK09903 172 KEPVVWA-PVLATILVLVGVKIPAAWDPTFNLIAKANSGVAVFAAGLTLAAHKFEFSA-EIAYNTFLKLILMPLAL-LLV 248 (314)
T ss_pred hchHHHH-HHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccH-HHHHHHHHHHHHHHHHH-HHH
Confidence 4455555 45666666443332111 24467888888999999999988776654433 33333333333333332 333
Q ss_pred HHhcCCChHHHHHHhhhcccCcHHHHHHHHHHc
Q 001810 704 HFVSGLPGPASIVIGNGLALSSTAVVLQVLQER 736 (1010)
Q Consensus 704 ~~l~Gls~~~ALLLGaILSaTSpAVvv~IL~el 736 (1010)
.++++++.. ..-...+.+++.+++...++.+.
T Consensus 249 ~~~~~l~~~-~~~v~vl~aa~P~a~~~~i~A~~ 280 (314)
T PRK09903 249 GMACHLNSE-HLQMMVLAGALPPAFSGIIIASR 280 (314)
T ss_pred HHHcCCCcH-HHHHHHHHHcccHHHHHHHHHHH
Confidence 445577543 23345566666677777777544
No 188
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=64.49 E-value=1.5e+02 Score=33.41 Aligned_cols=27 Identities=22% Similarity=0.197 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 001810 217 KEAVHKATMALSLAEARLQVAIESLQD 243 (1010)
Q Consensus 217 ~~~~~~~~~~~~~a~~~~~~~~~~~~~ 243 (1010)
+..++.|...+..|+..++...+-.+.
T Consensus 114 ~~~~~~a~~~l~~a~~~~~r~~~L~~~ 140 (334)
T TIGR00998 114 KIKLEQAREKLLQAELDLRRRVPLFKK 140 (334)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHC
Confidence 344555666677777777776654443
No 189
>PRK09973 putative outer membrane lipoprotein; Provisional
Probab=64.35 E-value=18 Score=34.05 Aligned_cols=45 Identities=18% Similarity=0.241 Sum_probs=30.4
Q ss_pred HHHHhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 001810 282 ANLANCETELRRLQSKKEELQKEVDRLNEVAEKAQMNALKAEEDVANIML 331 (1010)
Q Consensus 282 ~~l~~~~~~l~~~~~~~~~lq~~~~~l~~~~~~a~~~a~~a~~~~~~~m~ 331 (1010)
..|+-|-.. .+.++|+.+|+.|+.++.+++.++..|-.++.++..
T Consensus 15 ~LLaGCAs~-----~kvdqLss~V~~L~~kvdql~~dv~~a~aaa~aAk~ 59 (85)
T PRK09973 15 CLLSGCVNE-----QKVNQLASNVQTLNAKIARLEQDMKALRPQIYAAKS 59 (85)
T ss_pred HHHHHcCCc-----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356777664 377778888888888777777766666655555444
No 190
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=64.20 E-value=3.1e+02 Score=35.06 Aligned_cols=23 Identities=9% Similarity=0.081 Sum_probs=12.1
Q ss_pred hhHHHHHhhhHHHHHHHHHhhHH
Q 001810 267 DGLLLAAENDIKECQANLANCET 289 (1010)
Q Consensus 267 ~~~~~~a~~~~~~~~~~l~~~~~ 289 (1010)
+..+..|+.+..+.++.+.+.+.
T Consensus 243 ~~ql~~a~~~~~~a~a~~~~l~~ 265 (754)
T TIGR01005 243 NTELSRARANRAAAEGTADSVKK 265 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555554443
No 191
>PRK01658 holin-like protein; Validated
Probab=64.09 E-value=85 Score=31.40 Aligned_cols=99 Identities=18% Similarity=0.257 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCc---hHHHHHHHHHhhcccccccccCchhH-----HHHHHHHHHHHHHHHhhcCCh
Q 001810 603 LFDVLWLLLASVIFVPIFQKIPGGS---PVLGYLAAGILIGPYGLSIIRHVHGT-----KAIAEFGVVFLLFNIGLELSV 674 (1010)
Q Consensus 603 Ll~illLLl~A~ilg~Ll~Rl~gLP---~vVG~ILaGILLGP~gLglI~~~~~l-----e~LaeLGLi~LLF~aGLEidl 674 (1010)
+.++. +++...++|....++.++| +++|+++.=+++. .+.+. .+.+ -++.++++.|+=-.+|.=-.+
T Consensus 7 l~~l~-il~~~~~~G~~i~~~l~lpiPGsViGmlLL~~~L~---~~~ik-~~~v~~~a~~Ll~~m~llFVPa~VGi~~~~ 81 (122)
T PRK01658 7 LVQIA-LLYVFALVGTWIQEQLHLPIPGSIIGIFLLLLLLS---FKILK-LKWIELGAETLLAELPLFFIPSAVGVMNYG 81 (122)
T ss_pred HHHHH-HHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHH---hCCcC-HHHHHHHHHHHHHHHHHHHHHhhhHHHHhH
Confidence 44444 4445555666666654655 4566665433332 22232 2222 234555555555567777788
Q ss_pred hHHHhchhhHHHHHHHHHHHHHHHHHHHHHHh
Q 001810 675 ERLSSMKKYVFGLGSAQVLVTAVVVGLVAHFV 706 (1010)
Q Consensus 675 ~~Lrr~~k~il~LAlv~vllt~~~Vg~la~~l 706 (1010)
+.+++++..++...+++.+++.++.|+...++
T Consensus 82 ~ll~~~~~~il~~ivvsT~l~l~vtg~~~~~l 113 (122)
T PRK01658 82 DFLSSKGISLFLVVVISTFVVMIVTGYLTQLL 113 (122)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888877777777777666666665543
No 192
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=63.90 E-value=2e+02 Score=37.85 Aligned_cols=58 Identities=19% Similarity=0.065 Sum_probs=44.1
Q ss_pred hhhhccccCCCCCcHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhchhHHHHHHHhhhH
Q 001810 137 EERETKEDAEPPTTDELRELLMNAMKELEVAQLNSTMFEEKAQRISEAAIALKDEAANAWNNVNV 201 (1010)
Q Consensus 137 ~~~~~~~~~~~~~~~~l~~~l~~a~~~le~a~~~~~~~e~~~~~~~~~ai~~~d~~~~~~~~~~~ 201 (1010)
-.++|+-.++++.|+ ..-.+|..-|.+++-+|.+....-++---|+|+-+.--.||+.
T Consensus 163 LL~eTekAig~~~ll-------~~h~eL~~lr~~e~~Le~~~~~~~~~l~~L~~~~~~l~kdVE~ 220 (1072)
T KOG0979|consen 163 LLVETEKAIGAEELL-------QYHIELMDLREDEKSLEDKLTTKTEKLNRLEDEIDKLEKDVER 220 (1072)
T ss_pred HHHHHHHhcCchhhH-------HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 334666666665433 3445666677888889999999889999999999999999994
No 193
>PRK15136 multidrug efflux system protein EmrA; Provisional
Probab=63.85 E-value=78 Score=37.20 Aligned_cols=91 Identities=18% Similarity=0.168 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhchhHHHHHHHhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001810 151 DELRELLMNAMKELEVAQLNSTMFEEKAQRISEAAIALKDEAANAWNNVNVTLDMVHEIVNEECIAKEAVHKATMALSLA 230 (1010)
Q Consensus 151 ~~l~~~l~~a~~~le~a~~~~~~~e~~~~~~~~~ai~~~d~~~~~~~~~~~~~~~~~~~~~~e~~a~~~~~~~~~~~~~a 230 (1010)
.+++..|..|+.+|+.|..+-.-.....+. +-+--+.+..........++..+...++-.+.++....|...+.-|
T Consensus 95 ~~~~~~l~~A~a~l~~a~~~~~~~~~~~~~----~~a~l~~a~a~l~~a~~~~~R~~~L~~~g~iS~~~ld~a~~~~~~a 170 (390)
T PRK15136 95 TDAEQAFEKAKTALANSVRQTHQLMINSKQ----YQANIELQKTALAQAQSDLNRRVPLGNANLIGREELQHARDAVASA 170 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcCHHHHHHHHHHHHHH
Confidence 456666777777776654432111111110 1111122233334445556666777777777788888888888888
Q ss_pred HHHHHHHHHHhhhhc
Q 001810 231 EARLQVAIESLQDVK 245 (1010)
Q Consensus 231 ~~~~~~~~~~~~~~~ 245 (1010)
+++++.|...+...+
T Consensus 171 ~a~l~~a~~~l~~~~ 185 (390)
T PRK15136 171 QAQLDVAIQQYNANQ 185 (390)
T ss_pred HHHHHHHHHHHHHHH
Confidence 888888877776643
No 194
>COG2985 Predicted permease [General function prediction only]
Probab=63.25 E-value=32 Score=41.68 Aligned_cols=104 Identities=20% Similarity=0.307 Sum_probs=61.8
Q ss_pred HHHHHHHHhhcccc----cccccCchhHHHHHHHHHHHHHHHHhhcCChhH---HHhchhhHHHHHHHHHHHHHHHHHHH
Q 001810 630 LGYLAAGILIGPYG----LSIIRHVHGTKAIAEFGVVFLLFNIGLELSVER---LSSMKKYVFGLGSAQVLVTAVVVGLV 702 (1010)
Q Consensus 630 VG~ILaGILLGP~g----LglI~~~~~le~LaeLGLi~LLF~aGLEidl~~---Lrr~~k~il~LAlv~vllt~~~Vg~l 702 (1010)
-|.+++|+++|-.+ +-+--++.....+.++|+.++|=..|+.---+. +-..+-.++..+.+-.+++.+.++++
T Consensus 399 GGpLivaLiLG~ig~iGpl~w~mP~~An~~lrelGl~lFLA~VGl~aG~~f~~tL~~~Gl~~ig~g~lit~vp~i~~~ll 478 (544)
T COG2985 399 GGPLIVALILGFIGAIGPLTWFMPPGALLALRELGLALFLAGVGLSAGSGFVNTLTGSGLQIIGYGALVTLVPVIIVFLL 478 (544)
T ss_pred ccHHHHHHHHHHhcccCceEEEcChhHHHHHHHHHHHHHHHhhccccccchHhhhcccchhhhhHHHHHHHHHHHHHHHH
Confidence 47888888888421 111224556678999998877666666544332 22333445555555556666667777
Q ss_pred HHHhcCCChHHHHHHhhhcc-cCcHHHHHHHHHHc
Q 001810 703 AHFVSGLPGPASIVIGNGLA-LSSTAVVLQVLQER 736 (1010)
Q Consensus 703 a~~l~Gls~~~ALLLGaILS-aTSpAVvv~IL~el 736 (1010)
.+|++.++|.. +.|++.. .|+|+ ++....+.
T Consensus 479 g~~v~kmn~~~--l~G~laGs~T~pp-aLa~and~ 510 (544)
T COG2985 479 GRYVLKMNWLL--LCGALAGSMTDPP-ALAFANDA 510 (544)
T ss_pred HHHHHhccHHH--HhhHHhcCCCChH-HHHHHhhc
Confidence 88888888754 4444444 45554 34444443
No 195
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=63.01 E-value=2.8e+02 Score=31.90 Aligned_cols=76 Identities=22% Similarity=0.262 Sum_probs=46.4
Q ss_pred hHHHHHhhhHHHHHHHHHhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Q 001810 268 GLLLAAENDIKECQANLANCETELRRLQSKKEELQKEVDRLNEVAEKAQMNALKAEEDVANIMLLAEQAVAFEIEATQRV 347 (1010)
Q Consensus 268 ~~~~~a~~~~~~~~~~l~~~~~~l~~~~~~~~~lq~~~~~l~~~~~~a~~~a~~a~~~~~~~m~~ae~av~~e~ea~~~~ 347 (1010)
+.|..++.++.+.++.+.....+|.+++.++++++.++..+++.-...+..-..|| .-.|..+.+
T Consensus 209 ~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~---------------~~~~~~r~~ 273 (325)
T PF08317_consen 209 EELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAE---------------KIREECRGW 273 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHhcCC
Confidence 66777777777777777777777777777777777777666654443333222222 233455556
Q ss_pred ccHHHHHHHHH
Q 001810 348 NDAEIALQRAE 358 (1010)
Q Consensus 348 ~~~e~~l~~~~ 358 (1010)
...|+--.|++
T Consensus 274 t~~Ev~~Lk~~ 284 (325)
T PF08317_consen 274 TRSEVKRLKAK 284 (325)
T ss_pred CHHHHHHHHHH
Confidence 66666555444
No 196
>COG1566 EmrA Multidrug resistance efflux pump [Defense mechanisms]
Probab=62.95 E-value=95 Score=36.42 Aligned_cols=89 Identities=21% Similarity=0.253 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhchhHHHH-HHHhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001810 151 DELRELLMNAMKELEVAQLNSTMFEEKAQRISEAAIALKDEAAN-AWNNVNVTLDMVHEIVNEECIAKEAVHKATMALSL 229 (1010)
Q Consensus 151 ~~l~~~l~~a~~~le~a~~~~~~~e~~~~~~~~~ai~~~d~~~~-~~~~~~~~~~~~~~~~~~e~~a~~~~~~~~~~~~~ 229 (1010)
.+-|-.|.+|+..|+.|..+=.-++.+-+.-- | .-..+.. .+......++.-++....-....|-.+.|+.++.-
T Consensus 87 ~~y~~al~qAea~la~a~~~~~~~~a~~~~~~--A--~i~~a~a~~l~~a~~~~~R~~~L~~~g~vs~~~~~~a~~a~~~ 162 (352)
T COG1566 87 RDYRAALEQAEAALAAAEAQLRNLRAQLASAQ--A--LIAQAEAQDLDQAQNELERRAELAQRGVVSREELDRARAALQA 162 (352)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--H--HHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHH
Confidence 45677788888888887777666665433211 1 1111111 35555666666777777788888888889999999
Q ss_pred HHHHHHHHHHHhhh
Q 001810 230 AEARLQVAIESLQD 243 (1010)
Q Consensus 230 a~~~~~~~~~~~~~ 243 (1010)
|+|.+..|.++..+
T Consensus 163 A~A~~~~a~~~~~~ 176 (352)
T COG1566 163 AEAALAAAQAAQKQ 176 (352)
T ss_pred HHHHHHHhHHHHHH
Confidence 99999888754443
No 197
>PRK01821 hypothetical protein; Provisional
Probab=62.92 E-value=78 Score=32.18 Aligned_cols=99 Identities=18% Similarity=0.227 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCc---hHHHHHHHHHhhcccccccccCchhH-----HHHHHHHHHHHHHHHhhcCCh
Q 001810 603 LFDVLWLLLASVIFVPIFQKIPGGS---PVLGYLAAGILIGPYGLSIIRHVHGT-----KAIAEFGVVFLLFNIGLELSV 674 (1010)
Q Consensus 603 Ll~illLLl~A~ilg~Ll~Rl~gLP---~vVG~ILaGILLGP~gLglI~~~~~l-----e~LaeLGLi~LLF~aGLEidl 674 (1010)
+.++.++ ++...+|....++.++| +++|.++.=+++. .+.+. .+.+ -++.++.+.|+=-.+|.=..+
T Consensus 12 l~~l~il-l~~~~~Ge~i~~~l~lpiPGsViGmlLLf~~L~---~~~vk-~~~v~~~a~~LL~~m~LfFVPa~VGim~~~ 86 (133)
T PRK01821 12 LRAFVLI-YACLYAGIFIASLLPITIPGSIIGMLILFVLLA---LQILP-AKWVKPGCSLLIRYMALLFVPIGVGVMQYY 86 (133)
T ss_pred HHHHHHH-HHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHH---hCCcC-HHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 3344444 44444566666554654 3556554433332 22232 2222 234455555555567777788
Q ss_pred hHHHhchhhHHHHHHHHHHHHHHHHHHHHHHh
Q 001810 675 ERLSSMKKYVFGLGSAQVLVTAVVVGLVAHFV 706 (1010)
Q Consensus 675 ~~Lrr~~k~il~LAlv~vllt~~~Vg~la~~l 706 (1010)
+.++.++..++...+++.+++.++.|+...++
T Consensus 87 ~ll~~~~~~il~~ivvST~lvl~vtg~~~~~l 118 (133)
T PRK01821 87 DLLRAQFGPIVVSCIVSTLVVLLVVGWSSHYV 118 (133)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888777777777766666666655544
No 198
>PLN03223 Polycystin cation channel protein; Provisional
Probab=61.93 E-value=27 Score=46.72 Aligned_cols=83 Identities=20% Similarity=0.215 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCcccccCCCCcchhhHHHHHhhhHHHHHHHHHhhHHHH
Q 001810 212 EECIAKEAVHKATMALSLAEARLQVAIESLQDVKQEDDYPEGSTEDDAKSDGKEEDGLLLAAENDIKECQANLANCETEL 291 (1010)
Q Consensus 212 ~e~~a~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~l~~~~~~l 291 (1010)
.++.|+|--|.|.|.+. +.-..|+.-.|+++.+-..+|-+.|..++|+..+.|..|++=...+
T Consensus 1542 ~~at~~ei~~aa~~~~~-----------------~~g~~p~~~~~~e~~~~l~~e~~~L~~s~erL~~~Q~~l~egQ~k~ 1604 (1634)
T PLN03223 1542 TLATADEIDQAAHMLMD-----------------QVGQVPDDEDDDEDGDVLEKEVDQLQQSLERLAEVQRELAEGQVKV 1604 (1634)
T ss_pred ccccHHHHHHHHHHHHH-----------------HhCCCCCCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 46778888888888653 1222333333333333345566777777777777777777766666
Q ss_pred HHHhhhHHHHHHHHHHHHHH
Q 001810 292 RRLQSKKEELQKEVDRLNEV 311 (1010)
Q Consensus 292 ~~~~~~~~~lq~~~~~l~~~ 311 (1010)
-.=|.|.-|+|.++..|-||
T Consensus 1605 ~~~Q~~la~~q~kl~~l~~k 1624 (1634)
T PLN03223 1605 IEGQKQMAERQSRLSQLENK 1624 (1634)
T ss_pred hhhHHHHHHHHHHHHHHHhh
Confidence 66666666666666655553
No 199
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=61.37 E-value=34 Score=38.50 Aligned_cols=75 Identities=25% Similarity=0.349 Sum_probs=49.8
Q ss_pred CcchhhHHHHHhhhHHHHHHHHHhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH-HHHHHHHH
Q 001810 263 GKEEDGLLLAAENDIKECQANLANCETELRRLQSKKEELQKEVDRLNEVAEKAQMNALKAEEDVANI-MLLAEQAV 337 (1010)
Q Consensus 263 ~~~~~~~~~~a~~~~~~~~~~l~~~~~~l~~~~~~~~~lq~~~~~l~~~~~~a~~~a~~a~~~~~~~-m~~ae~av 337 (1010)
..+.+..+-..+.+.++.|..+....++...+|.+..++|+|++++++.-++.|-+=...+++..+= =+|.+||=
T Consensus 33 i~~~ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~~~l~~raR 108 (265)
T COG3883 33 IQNQDSKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQELLKKRAR 108 (265)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445566777777777777777777777777778888888888888777776665555555554332 23445543
No 200
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=60.41 E-value=4.1e+02 Score=35.50 Aligned_cols=30 Identities=17% Similarity=0.251 Sum_probs=17.4
Q ss_pred HHhhhcccCCCCCCcchhhhcc-cCCccccc
Q 001810 468 EMQKDLTRESSPVNAPKTLQKK-SSRFFPAS 497 (1010)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~~~-~~r~~~~~ 497 (1010)
|.-+=..++-.|.|.-+|..-. +..||+-+
T Consensus 607 Ea~~~m~s~~~p~n~~~aytldg~~~~~~g~ 637 (1074)
T KOG0250|consen 607 EAREFMQSDKPPANVTKAYTLDGRQIFAGGP 637 (1074)
T ss_pred HHHHHHhcCCCCccceeeeccCccccccCCC
Confidence 4344455555677888887544 44555544
No 201
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=60.38 E-value=4.4e+02 Score=34.32 Aligned_cols=43 Identities=21% Similarity=0.358 Sum_probs=33.7
Q ss_pred CCCcHHHHHHHHHHHHHHHHHhhh----hhHHHHHHHHHHHHHHhch
Q 001810 147 PPTTDELRELLMNAMKELEVAQLN----STMFEEKAQRISEAAIALK 189 (1010)
Q Consensus 147 ~~~~~~l~~~l~~a~~~le~a~~~----~~~~e~~~~~~~~~ai~~~ 189 (1010)
..++++|+|.+.+...++.+.+.. ...|-+|.++..+.-..+.
T Consensus 377 ~~Ei~~l~d~~d~~e~ki~~Lq~kie~Lee~l~ekd~ql~~~k~Rl~ 423 (775)
T PF10174_consen 377 QGEIEDLRDMLDKKERKINVLQKKIENLEEQLREKDRQLDEEKERLS 423 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345888999999999888888887 4666688888877766666
No 202
>COG2610 GntT H+/gluconate symporter and related permeases [Carbohydrate transport and metabolism / Amino acid transport and metabolism]
Probab=60.24 E-value=3.9e+02 Score=32.50 Aligned_cols=67 Identities=16% Similarity=0.247 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH--------------hcCCCc-hHHHHHHHHHhhcccccccccCchhHHHHHHHHHHHHH
Q 001810 601 ASLFDVLWLLLASVIFVPIFQ--------------KIPGGS-PVLGYLAAGILIGPYGLSIIRHVHGTKAIAEFGVVFLL 665 (1010)
Q Consensus 601 ~~Ll~illLLl~A~ilg~Ll~--------------Rl~gLP-~vVG~ILaGILLGP~gLglI~~~~~le~LaeLGLi~LL 665 (1010)
..+-.+..++.++.++|.+.. ++ |.. ......++|.++|-. ..-...-+.+..+.
T Consensus 57 gtlg~i~~Vi~lGam~GkLle~sGaA~~IA~tii~~~-G~kr~~~Al~l~g~i~~~~---------vF~dv~~v~l~Pia 126 (442)
T COG2610 57 GTLGSLALVIGLGAMLGKLLEDSGAAESIADTLIRKF-GEKRALLALVLAGLILGIP---------VFFDVGFVLLIPLA 126 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHh-CcchHHHHHHHHHHHHhhh---------HHhhhHHHHHHHHH
Confidence 445556666666666665554 45 555 467888999999831 11233445566678
Q ss_pred HHHhhcCChhHH
Q 001810 666 FNIGLELSVERL 677 (1010)
Q Consensus 666 F~aGLEidl~~L 677 (1010)
|...-+.+...+
T Consensus 127 ~alak~~~is~~ 138 (442)
T COG2610 127 FALAKEAGISLL 138 (442)
T ss_pred HHHHHHcCCCHH
Confidence 887777776654
No 203
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=59.93 E-value=2.7e+02 Score=37.56 Aligned_cols=92 Identities=10% Similarity=0.050 Sum_probs=43.9
Q ss_pred HHhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCcccccCCCCcchhhHHHHHhh
Q 001810 196 WNNVNVTLDMVHEIVNEECIAKEAVHKATMALSLAEARLQVAIESLQDVKQEDDYPEGSTEDDAKSDGKEEDGLLLAAEN 275 (1010)
Q Consensus 196 ~~~~~~~~~~~~~~~~~e~~a~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 275 (1010)
..+.++||+.++++-.....+++--+ .+.-|..+++-+.+.++..+... ++. . ..-+..+=|..+..++.
T Consensus 47 ~~~l~~tl~~l~~~~~~~~~~~~~~~----~i~~ap~~~~~~~~~l~~~~~~~--~~~-~---~~~s~~~Leq~l~~~~~ 116 (1109)
T PRK10929 47 VEALQSALNWLEERKGSLERAKQYQQ----VIDNFPKLSAELRQQLNNERDEP--RSV-P---PNMSTDALEQEILQVSS 116 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHhHHHHHHHHHHHHhhhccc--ccc-c---ccCCHHHHHHHHHHHHH
Confidence 34556666666665544444333222 33444444555555555422211 111 0 11123344555666666
Q ss_pred hHHHHHHHHHhhHHHHHHHhhh
Q 001810 276 DIKECQANLANCETELRRLQSK 297 (1010)
Q Consensus 276 ~~~~~~~~l~~~~~~l~~~~~~ 297 (1010)
+..+.|.+++.-..+++++...
T Consensus 117 ~L~~~q~~l~~~~~~~~~~~~~ 138 (1109)
T PRK10929 117 QLLEKSRQAQQEQDRAREISDS 138 (1109)
T ss_pred HHHHHHHHHHHHhhhhHHHHHH
Confidence 6667777666666666444333
No 204
>COG1566 EmrA Multidrug resistance efflux pump [Defense mechanisms]
Probab=59.67 E-value=69 Score=37.54 Aligned_cols=51 Identities=27% Similarity=0.335 Sum_probs=36.7
Q ss_pred CCcchhhHHHHHhhhHHHHHHHHHhhHHHHHHHhhhHHH--------HHHHHHHHHHHH
Q 001810 262 DGKEEDGLLLAAENDIKECQANLANCETELRRLQSKKEE--------LQKEVDRLNEVA 312 (1010)
Q Consensus 262 ~~~~~~~~~~~a~~~~~~~~~~l~~~~~~l~~~~~~~~~--------lq~~~~~l~~~~ 312 (1010)
|-++=+.+++.|+.++..|++++.+.+.++...|...+. .|.+.+|.++++
T Consensus 85 D~~~y~~al~qAea~la~a~~~~~~~~a~~~~~~A~i~~a~a~~l~~a~~~~~R~~~L~ 143 (352)
T COG1566 85 DPRDYRAALEQAEAALAAAEAQLRNLRAQLASAQALIAQAEAQDLDQAQNELERRAELA 143 (352)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777778889999988888888888888777666654443 344555665555
No 205
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=59.31 E-value=2.2e+02 Score=36.92 Aligned_cols=85 Identities=24% Similarity=0.307 Sum_probs=58.6
Q ss_pred HHHHhhhHHHHHHHHHhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 001810 270 LLAAENDIKECQANLANCETELRRLQSKKEELQKEVDRLNEVAEKAQMNALKAEEDVANIMLLAEQAVAFEIEATQRVND 349 (1010)
Q Consensus 270 ~~~a~~~~~~~~~~l~~~~~~l~~~~~~~~~lq~~~~~l~~~~~~a~~~a~~a~~~~~~~m~~ae~av~~e~ea~~~~~~ 349 (1010)
.+.++.|+-..+..+.+.+.++.++|.-.+..|.++.+|.|..+++...+...+++ |+|.- +.. |.|+ +++.
T Consensus 123 ~er~~~El~~lr~~lE~~q~~~e~~q~~l~~~~eei~kL~e~L~~~g~~~~~~~~~--~~~~~--~~~--~~e~--~~~~ 194 (775)
T PF10174_consen 123 RERLQRELERLRKTLEELQLRIETQQQTLDKADEEIEKLQEMLQSKGLSAEAEEED--NEALR--RIR--EAEA--RIMR 194 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccchhhh--hHHHH--HHH--HHHH--HHHH
Confidence 45567777788888888888888888888888999999999888888877444444 34433 222 2333 3456
Q ss_pred HHHHHHHHHHhhc
Q 001810 350 AEIALQRAEKSLS 362 (1010)
Q Consensus 350 ~e~~l~~~~~~~~ 362 (1010)
-+.-|.+-++...
T Consensus 195 le~lle~~e~~~~ 207 (775)
T PF10174_consen 195 LESLLERKEKEHM 207 (775)
T ss_pred HHHHHHHHHHHhh
Confidence 6666666666653
No 206
>KOG4657 consensus Uncharacterized conserved protein [Function unknown]
Probab=58.98 E-value=2.3e+02 Score=31.36 Aligned_cols=74 Identities=31% Similarity=0.332 Sum_probs=48.4
Q ss_pred hhHHHHHhhhHHHHHHHHHhhHHHHHHHhhhHHHHHHHHHHHHHHHH---HHHHHHhhhHHHHHHHHH---HHHHHHHHH
Q 001810 267 DGLLLAAENDIKECQANLANCETELRRLQSKKEELQKEVDRLNEVAE---KAQMNALKAEEDVANIML---LAEQAVAFE 340 (1010)
Q Consensus 267 ~~~~~~a~~~~~~~~~~l~~~~~~l~~~~~~~~~lq~~~~~l~~~~~---~a~~~a~~a~~~~~~~m~---~ae~av~~e 340 (1010)
++-+.--..||++.|+ +.|.=++++|..|+|+--.+..+.++-+ ||+..+.|--+|=|++=. .=+.+.-+|
T Consensus 85 ~~~q~~ieqeik~~q~---elEvl~~n~Q~lkeE~dd~keiIs~kr~~~~Ka~e~~~kRkQdsa~~~e~a~wy~dyLGle 161 (246)
T KOG4657|consen 85 EARQMGIEQEIKATQS---ELEVLRRNLQLLKEEKDDSKEIISQKRQALSKAKENAGKRKQDSADIHEAASWYNDYLGLE 161 (246)
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHhcCce
Confidence 3444555678888887 5566677888888888766666666654 777777776777666543 224555555
Q ss_pred HHH
Q 001810 341 IEA 343 (1010)
Q Consensus 341 ~ea 343 (1010)
||+
T Consensus 162 ie~ 164 (246)
T KOG4657|consen 162 IEA 164 (246)
T ss_pred eee
Confidence 554
No 207
>PHA02562 46 endonuclease subunit; Provisional
Probab=58.94 E-value=1.3e+02 Score=36.74 Aligned_cols=32 Identities=3% Similarity=0.203 Sum_probs=13.8
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Q 001810 204 DMVHEIVNEEC-IAKEAVHKATMALSLAEARLQ 235 (1010)
Q Consensus 204 ~~~~~~~~~e~-~a~~~~~~~~~~~~~a~~~~~ 235 (1010)
+.+++...+.. .+++.+++-.+-++..+.++.
T Consensus 166 ~~~~~~~k~~~~e~~~~i~~l~~~i~~l~~~i~ 198 (562)
T PHA02562 166 SEMDKLNKDKIRELNQQIQTLDMKIDHIQQQIK 198 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455544444 344444444444444444433
No 208
>PRK03598 putative efflux pump membrane fusion protein; Provisional
Probab=58.86 E-value=1.4e+02 Score=33.99 Aligned_cols=24 Identities=25% Similarity=0.338 Sum_probs=10.9
Q ss_pred HHHHhhhHHHHHHHHHhhHHHHHH
Q 001810 270 LLAAENDIKECQANLANCETELRR 293 (1010)
Q Consensus 270 ~~~a~~~~~~~~~~l~~~~~~l~~ 293 (1010)
++.++.+...+++++..-+.++..
T Consensus 147 ~~~~~~~~~~a~~~~~~a~~~~~~ 170 (331)
T PRK03598 147 LENARSSRDQAQATLKSAQDKLSQ 170 (331)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444433
No 209
>COG0385 Predicted Na+-dependent transporter [General function prediction only]
Probab=58.75 E-value=86 Score=36.29 Aligned_cols=104 Identities=16% Similarity=0.230 Sum_probs=64.6
Q ss_pred HHHHHHHHHHhhcccChhhhhh---hhhhHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHH---HhhHHHHHHHHH
Q 001810 875 GLLLGLFFMTVGMSIDPKLLLS---NFPVITGALGLLIGGKTILVALVGRLFGVSVISAIRTGLL---LAPGGEFAFVAF 948 (1010)
Q Consensus 875 ~~f~PLFFVlIGl~Ldl~~L~~---~~~~iilillvvil~K~l~v~l~~~~~gl~~real~IGl~---LaprG~vaLVLa 948 (1010)
..+..+.|...|+.+...++.. +|...+..+++-++.=++..+..++.++++ ..+++|+. .+|.|..+.+..
T Consensus 41 ~~~l~lImf~mGl~Ls~~d~~~~~~~p~~vligl~~qfvlmPlla~~~~~~~~l~--~~l~~Gl~ll~~~Pggv~S~~~t 118 (319)
T COG0385 41 PIALALIMFGMGLTLSREDFLAGLKHPRLVLIGLAAQFVLMPLLALLLAKLFPLP--PELAVGLLLLGCCPGGVASNAMT 118 (319)
T ss_pred HHHHHHHHHhcCCCCCHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHcCCC--HHHHHhHHheeeCCCchhHHHHH
Confidence 4556677777899998877754 455556666666666677777777777754 44555644 467777775555
Q ss_pred HHHHhCCCCChhh-HHHHHHHHHHHHHHHHHHHHh
Q 001810 949 GEAVNQVCFQPHT-VFLIPNGISIYLQLIMIFFFF 982 (1010)
Q Consensus 949 ~iAls~GiIs~~~-lVvlvVVlS~IItPiL~~l~~ 982 (1010)
.++ .|-..-.. ......+++.+++|++..++.
T Consensus 119 ~lA--kGnValsV~~tsvStll~~f~tPllv~l~~ 151 (319)
T COG0385 119 YLA--KGNVALSVCSTSVSTLLGPFLTPLLVGLLA 151 (319)
T ss_pred HHh--cCcHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444 33333333 344445566667777777743
No 210
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=58.73 E-value=59 Score=39.90 Aligned_cols=81 Identities=20% Similarity=0.251 Sum_probs=53.0
Q ss_pred HHHHHHHhhhhccCCCCCCCCcccccCCCCcchhhHHHHHhhhHHHHHHHHHhhHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 001810 234 LQVAIESLQDVKQEDDYPEGSTEDDAKSDGKEEDGLLLAAENDIKECQANLANCETELRRLQSKKEELQKEVDRLNEVAE 313 (1010)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~l~~~~~~l~~~~~~~~~lq~~~~~l~~~~~ 313 (1010)
|.+-++|+++.+...++.-.|-+ ++.+ -.-++|-..-++..-.||++++.|..|||.|+.++|-+-|
T Consensus 51 lt~~qdA~~~~~~~~~p~~~s~~---------~~s~----~r~~~e~~RI~~sVs~EL~ele~krqel~seI~~~n~kiE 117 (907)
T KOG2264|consen 51 LTTLQDALKQNIENLDPYDASCS---------GYSI----GRILREQKRILASVSLELTELEVKRQELNSEIEEINTKIE 117 (907)
T ss_pred eecccccchhcccccCccccccc---------chhH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 34445666665555555544331 1222 2225555566777888999999999999999999999888
Q ss_pred HHHHHHhhhHHHHH
Q 001810 314 KAQMNALKAEEDVA 327 (1010)
Q Consensus 314 ~a~~~a~~a~~~~~ 327 (1010)
.-|-.-.++.-|..
T Consensus 118 elk~~i~~~q~eL~ 131 (907)
T KOG2264|consen 118 ELKRLIPQKQLELS 131 (907)
T ss_pred HHHHHHHHhHHHHH
Confidence 76665555555543
No 211
>PRK10263 DNA translocase FtsK; Provisional
Probab=58.33 E-value=60 Score=43.79 Aligned_cols=14 Identities=43% Similarity=0.517 Sum_probs=6.5
Q ss_pred hhHHHHHHHHHHHc
Q 001810 844 LSMALGAFLAGLLL 857 (1010)
Q Consensus 844 lSgvLGAFiAGLiL 857 (1010)
.-|.+|++++++++
T Consensus 63 l~GiVGA~LAD~L~ 76 (1355)
T PRK10263 63 LGGMPGAWLADTLF 76 (1355)
T ss_pred ccchHHHHHHHHHH
Confidence 33455555544443
No 212
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=58.30 E-value=6e+02 Score=34.11 Aligned_cols=9 Identities=11% Similarity=0.157 Sum_probs=3.3
Q ss_pred HHHHHHHhh
Q 001810 279 ECQANLANC 287 (1010)
Q Consensus 279 ~~~~~l~~~ 287 (1010)
.+++.+..+
T Consensus 367 ~~~~~~~~l 375 (1047)
T PRK10246 367 GWRAQFSQQ 375 (1047)
T ss_pred HHHHHHHHH
Confidence 333333333
No 213
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=58.12 E-value=63 Score=28.29 Aligned_cols=48 Identities=25% Similarity=0.423 Sum_probs=37.6
Q ss_pred HHHHhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 001810 282 ANLANCETELRRLQSKKEELQKEVDRLNEVAEKAQMNALKAEEDVANI 329 (1010)
Q Consensus 282 ~~l~~~~~~l~~~~~~~~~lq~~~~~l~~~~~~a~~~a~~a~~~~~~~ 329 (1010)
+.+.+...+...|..|...|+.+|+.+..-+..|+..|..|-+-.=|+
T Consensus 3 akid~Ls~dVq~L~~kvdqLs~dv~~lr~~v~~ak~EAaRAN~RlDN~ 50 (56)
T PF04728_consen 3 AKIDQLSSDVQTLNSKVDQLSSDVNALRADVQAAKEEAARANQRLDNI 50 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 456667778888999999999999999888887777777776665554
No 214
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=58.03 E-value=2.2e+02 Score=35.49 Aligned_cols=28 Identities=21% Similarity=0.164 Sum_probs=19.9
Q ss_pred CCCcHHHHHHHHHHHHHHHHHhhhhhHH
Q 001810 147 PPTTDELRELLMNAMKELEVAQLNSTMF 174 (1010)
Q Consensus 147 ~~~~~~l~~~l~~a~~~le~a~~~~~~~ 174 (1010)
..+....+|+|+=...|||.+-+..--.
T Consensus 180 ~~e~~~~~d~L~fq~~Ele~~~l~~gE~ 207 (557)
T COG0497 180 ERERAQRADLLQFQLEELEELNLQPGED 207 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCchH
Confidence 3446677888888888888877665433
No 215
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=57.95 E-value=1.5e+02 Score=29.73 Aligned_cols=44 Identities=23% Similarity=0.338 Sum_probs=24.9
Q ss_pred hhhHHHHHhhhHHHHHHHHHhhHHHHHHHhhhHHHHHHHHHHHH
Q 001810 266 EDGLLLAAENDIKECQANLANCETELRRLQSKKEELQKEVDRLN 309 (1010)
Q Consensus 266 ~~~~~~~a~~~~~~~~~~l~~~~~~l~~~~~~~~~lq~~~~~l~ 309 (1010)
-++|..-=+..+..++..+.+++.+|..++.+.++++..+.++.
T Consensus 92 ~~eA~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~ 135 (140)
T PRK03947 92 LDEAIEILDKRKEELEKALEKLEEALQKLASRIAQLAQELQQLQ 135 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555566666666666666666555555555544
No 216
>COG1380 Putative effector of murein hydrolase LrgA [General function prediction only]
Probab=57.81 E-value=97 Score=31.36 Aligned_cols=100 Identities=14% Similarity=0.154 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCc---hHHHHHHHHHhhcccccccccCchhH-----HHHHHHHHHHHHHHHhhcCC
Q 001810 602 SLFDVLWLLLASVIFVPIFQKIPGGS---PVLGYLAAGILIGPYGLSIIRHVHGT-----KAIAEFGVVFLLFNIGLELS 673 (1010)
Q Consensus 602 ~Ll~illLLl~A~ilg~Ll~Rl~gLP---~vVG~ILaGILLGP~gLglI~~~~~l-----e~LaeLGLi~LLF~aGLEid 673 (1010)
.+.++.+++.+..+-.++.+-+ ++| +++|+++.=+++. ++.++ .+.+ ..+.++++.|+==..|.--.
T Consensus 7 ~~~q~~ii~~~~~~G~~i~~~l-~lplPGsIiGmvLLfllL~---~~iv~-l~wv~~~a~~Ll~~m~llFVPa~VgVm~y 81 (128)
T COG1380 7 ILRQLAIILGFLFLGEWIASLL-HLPLPGSIIGMVLLFLLLA---LKIVK-LEWVERGATFLLRNMALLFVPAGVGVMNY 81 (128)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh-CCCCChhHHHHHHHHHHHH---hCCcc-HHHHHHHHHHHHHHHHHHHhcchHHHHHH
Confidence 3445555555555444444444 655 3566655433333 23333 2222 34444555444445666667
Q ss_pred hhHHHhchhhHHHHHHHHHHHHHHHHHHHHHHh
Q 001810 674 VERLSSMKKYVFGLGSAQVLVTAVVVGLVAHFV 706 (1010)
Q Consensus 674 l~~Lrr~~k~il~LAlv~vllt~~~Vg~la~~l 706 (1010)
.+.+..++.+++...+++.+++..+.|+...++
T Consensus 82 ~~~l~~~~~~Il~~~iiST~lv~~vtg~~~~~l 114 (128)
T COG1380 82 FDLLAADGLPILVVIIISTLLVLLVTGWVVQLL 114 (128)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 788888888888887777777777777766655
No 217
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=57.68 E-value=4.3e+02 Score=35.76 Aligned_cols=55 Identities=16% Similarity=0.245 Sum_probs=33.3
Q ss_pred HHHHHHHHHHhhhhhHHHHHHH--HHHHHHHhchhHHHHHHHhhhHhHHHHHHHHHH
Q 001810 158 MNAMKELEVAQLNSTMFEEKAQ--RISEAAIALKDEAANAWNNVNVTLDMVHEIVNE 212 (1010)
Q Consensus 158 ~~a~~~le~a~~~~~~~e~~~~--~~~~~ai~~~d~~~~~~~~~~~~~~~~~~~~~~ 212 (1010)
|+|..+-+.+..+..+-|++++ +.+..---++++...++.-.....|..+.+...
T Consensus 488 q~~l~q~~~ke~~ek~~~~~~~~~~l~~~~~~~~eele~~q~~~~~~~~~~~kv~~~ 544 (1317)
T KOG0612|consen 488 QKALLQHEQKEVEEKLSEEEAKKRKLEALVRQLEEELEDAQKKNDNAADSLEKVNSL 544 (1317)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 5666667777777666655554 566666677888887754444444444444443
No 218
>PF13166 AAA_13: AAA domain
Probab=57.54 E-value=3.7e+02 Score=33.95 Aligned_cols=141 Identities=20% Similarity=0.299 Sum_probs=0.0
Q ss_pred cHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhchhHHHHHHHhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001810 150 TDELRELLMNAMKELEVAQLNSTMFEEKAQRISEAAIALKDEAANAWNNVNVTLDMVHEIVNEECIAKEAVHKATMALSL 229 (1010)
Q Consensus 150 ~~~l~~~l~~a~~~le~a~~~~~~~e~~~~~~~~~ai~~~d~~~~~~~~~~~~~~~~~~~~~~e~~a~~~~~~~~~~~~~ 229 (1010)
.++++..+......++. +.+.+++|-..++. .+.+ +.....+..+++.++.+...+.+--..-++..
T Consensus 324 ~~~~~~~~~~l~~~l~~---l~~~L~~K~~~~~~-~~~~-~~~~~~~~~l~~~i~~~n~~i~~~n~~~~~~~-------- 390 (712)
T PF13166_consen 324 KEELKSAIEALKEELEE---LKKALEKKIKNPSS-PIEL-EEINEDIDELNSIIDELNELIEEHNEKIDNLK-------- 390 (712)
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHhcccc-cccc-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------
Q ss_pred HHHHHHHHHHHhhhhccCCCCCCCCcccccCCCCcchhhHHHHHhhhHHHHHHHHHhhHHHHHHHhhhHHHHHHHHHHHH
Q 001810 230 AEARLQVAIESLQDVKQEDDYPEGSTEDDAKSDGKEEDGLLLAAENDIKECQANLANCETELRRLQSKKEELQKEVDRLN 309 (1010)
Q Consensus 230 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~l~~~~~~l~~~~~~~~~lq~~~~~l~ 309 (1010)
.++.-+.+.+.. ........+|.+.+..+.+.+.++..++.++..++++...++
T Consensus 391 --~~~~~~~~~~~~------------------------~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 444 (712)
T PF13166_consen 391 --KEQNELKDKLWL------------------------HLIAKLKEDIEEYQKEIKELEKEINSLEKKLKKAKEEIKKIE 444 (712)
T ss_pred --HHHHHHHHHHHH------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHhhhHHHHHHH
Q 001810 310 EVAEKAQMNALKAEEDVANI 329 (1010)
Q Consensus 310 ~~~~~a~~~a~~a~~~~~~~ 329 (1010)
......+-.-.+-+.-+..|
T Consensus 445 ~~i~~l~~~~~~~~~~~~~i 464 (712)
T PF13166_consen 445 KEIKELEAQLKNTEPAADRI 464 (712)
T ss_pred HHHHHHHHHHhhhHHHHHHH
No 219
>PF05276 SH3BP5: SH3 domain-binding protein 5 (SH3BP5); InterPro: IPR007940 The SH3 domain-binding protein inhibits the auto and transphophorylation of BTK and acts as a negative regulator of BTK-related signalling in B cells.
Probab=57.51 E-value=77 Score=35.23 Aligned_cols=96 Identities=35% Similarity=0.375 Sum_probs=54.5
Q ss_pred CCCcchhhHHHHHhhhHHHHHHHHHhhHHHHHHHhh----hHHHHHHHHH------------------------HHHHHH
Q 001810 261 SDGKEEDGLLLAAENDIKECQANLANCETELRRLQS----KKEELQKEVD------------------------RLNEVA 312 (1010)
Q Consensus 261 ~~~~~~~~~~~~a~~~~~~~~~~l~~~~~~l~~~~~----~~~~lq~~~~------------------------~l~~~~ 312 (1010)
.-+..|-|.|-.|-+||-..+..|.+-...-|++++ +..++-|++- +-...=
T Consensus 7 prVq~eLe~LN~atd~IN~lE~~L~~ar~~fr~~l~e~~~kL~~~~kkLg~~I~karPYyea~~~a~~aq~e~q~Aa~~y 86 (239)
T PF05276_consen 7 PRVQEELEKLNQATDEINRLENELDEARATFRRLLSESTKKLNELAKKLGSCIEKARPYYEARRKAKEAQQEAQKAALQY 86 (239)
T ss_pred cHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566677778888888888777777766555543 2333333322 222222
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHH-------------HHhhhcccHHHHHHHHHHh
Q 001810 313 EKAQMNALKAEEDVANIMLLAEQAVAFEI-------------EATQRVNDAEIALQRAEKS 360 (1010)
Q Consensus 313 ~~a~~~a~~a~~~~~~~m~~ae~av~~e~-------------ea~~~~~~~e~~l~~~~~~ 360 (1010)
|+|.-.=..|.|-|+ +|||-+...= .||++||+||..-.+++..
T Consensus 87 erA~~~h~aAKe~v~----laEq~l~~~~~~~~D~~wqEmLn~A~~kVneAE~ek~~ae~e 143 (239)
T PF05276_consen 87 ERANSMHAAAKEMVA----LAEQSLMSDSNWTFDPAWQEMLNHATQKVNEAEQEKTRAERE 143 (239)
T ss_pred HHHHHHHHHHHHHHH----HHHHHHhcCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222222222333333 6677665433 5888999999888777764
No 220
>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function.
Probab=57.42 E-value=2.8e+02 Score=29.92 Aligned_cols=142 Identities=20% Similarity=0.184 Sum_probs=81.9
Q ss_pred HHhhhhhHHHHHHH---HHHHHHHhchhHH-HHHHHhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001810 166 VAQLNSTMFEEKAQ---RISEAAIALKDEA-ANAWNNVNVTLDMVHEIVNEECIAKEAVHKATMALSLAEARLQVAIESL 241 (1010)
Q Consensus 166 ~a~~~~~~~e~~~~---~~~~~ai~~~d~~-~~~~~~~~~~~~~~~~~~~~e~~a~~~~~~~~~~~~~a~~~~~~~~~~~ 241 (1010)
.|+.-.+.+-+||- |-+|.|++=|... ..-...|.-+=.+||++-+.=..++.+++.|..+..-|+..++.....+
T Consensus 39 Aa~~vk~~lA~kA~qaA~aAeAaL~GKq~iveqLe~ev~EAe~vV~ee~~sL~~aq~na~aA~~aa~~A~~q~~~L~~~l 118 (188)
T PF05335_consen 39 AAQQVKNQLADKAAQAAKAAEAALAGKQQIVEQLEQEVREAEAVVQEEKASLQQAQANAQAAQRAAQQAQQQLETLKAAL 118 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555543 3444444443322 2222333333344455544445666777777777777777777777777
Q ss_pred hhhccCCCCCCCCcccccCCCCcchhhHHHHHhhhHHHHHHHHHhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 001810 242 QDVKQEDDYPEGSTEDDAKSDGKEEDGLLLAAENDIKECQANLANCETELRRLQSKKEELQKEVDRLNEVAEKAQMNALK 321 (1010)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~l~~~~~~l~~~~~~~~~lq~~~~~l~~~~~~a~~~a~~ 321 (1010)
+.+++..+. -+.....||.|+.+=+..|..-..++.+|+....+...+.++..+-|.||--.|.-
T Consensus 119 ~~a~~nl~~---------------a~~~a~~AQ~el~eK~qLLeaAk~Rve~L~~QL~~Ar~D~~~tk~aA~kA~~AA~e 183 (188)
T PF05335_consen 119 KAAQANLAN---------------AEQVAEGAQQELAEKTQLLEAAKRRVEELQRQLQAARADYEKTKKAAYKAACAAQE 183 (188)
T ss_pred HHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 776532221 23455566777777666666666667777777777777777777666666655544
Q ss_pred h
Q 001810 322 A 322 (1010)
Q Consensus 322 a 322 (1010)
|
T Consensus 184 A 184 (188)
T PF05335_consen 184 A 184 (188)
T ss_pred H
Confidence 4
No 221
>PRK15477 oxaloacetate decarboxylase subunit beta; Provisional
Probab=57.25 E-value=4e+02 Score=31.75 Aligned_cols=54 Identities=17% Similarity=0.249 Sum_probs=35.4
Q ss_pred chhHHHHHHHHHHHcCCCchhHHHHHHHHh-HHHHHHHHHHHHhhcccChhhhhh
Q 001810 843 GLSMALGAFLAGLLLAETEFSLQVESDIAP-YRGLLLGLFFMTVGMSIDPKLLLS 896 (1010)
Q Consensus 843 GlSgvLGAFiAGLiLs~~~~~~~L~e~l~~-i~~~f~PLFFVlIGl~Ldl~~L~~ 896 (1010)
...+++|.+..|-.+++...-+++.+..+. +..+...+.=+.+|....-+.+..
T Consensus 282 ~a~PLiGmlmfGNllrEsGVv~rLs~taqn~L~nivTIfLGl~VGa~~~A~~FL~ 336 (433)
T PRK15477 282 DAAPLLGMFCFGNLMRESGVVERLSDTVQNGLINIVTIFLGLSVGAKLVADKFLQ 336 (433)
T ss_pred cHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHhhCC
Confidence 446899999999999987765555544333 344444455566777776555543
No 222
>COG3264 Small-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane]
Probab=57.24 E-value=5.7e+02 Score=33.46 Aligned_cols=46 Identities=22% Similarity=0.240 Sum_probs=25.0
Q ss_pred cCCCCccchhhHHHHHHHHHHhhchhHHHHHHHHhhhhhhhccchhhh
Q 001810 502 AVDGTESTQASIFQGLMEYARKQLPKLVLGFLLFGAGVAFYANQAERS 549 (1010)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~ 549 (1010)
..|+-+.||.-+|=+....++--.--+.+|+.++.+= |+-++.-++
T Consensus 285 ~~d~~~~t~~a~~ls~~~~Lp~dl~~~~~~~~~~~~~--f~i~~l~~a 330 (835)
T COG3264 285 LADSQFLTPLAILLSILNALPLDLAWLALGLFLLLAF--FFIARLLGA 330 (835)
T ss_pred hhHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHH--HHHHHHHHH
Confidence 4466667888887777777644333444444332221 444444444
No 223
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=56.84 E-value=1e+02 Score=27.40 Aligned_cols=16 Identities=25% Similarity=0.401 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHH
Q 001810 206 VHEIVNEECIAKEAVH 221 (1010)
Q Consensus 206 ~~~~~~~e~~a~~~~~ 221 (1010)
.|.-+..|.-||++++
T Consensus 2 lQsaL~~EirakQ~~~ 17 (61)
T PF08826_consen 2 LQSALEAEIRAKQAIQ 17 (61)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHH
Confidence 4667778888888887
No 224
>COG3263 NhaP-type Na+/H+ and K+/H+ antiporters with a unique C-terminal domain [Inorganic ion transport and metabolism]
Probab=56.77 E-value=1.3e+02 Score=36.35 Aligned_cols=60 Identities=8% Similarity=0.055 Sum_probs=43.6
Q ss_pred HHhhcccChhhhhhh-hhhHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHhhHHH
Q 001810 883 MTVGMSIDPKLLLSN-FPVITGALGLLIGGKTILVALVGRLFGVSVISAIRTGLLLAPGGE 942 (1010)
Q Consensus 883 VlIGl~Ldl~~L~~~-~~~iilillvvil~K~l~v~l~~~~~gl~~real~IGl~LaprG~ 942 (1010)
.--|+..+++.+... |+.+.+.++.+++.-.+....+.|.++++|-|++.+|...+..-.
T Consensus 73 fdgG~~T~lss~r~a~~palsLATlGVl~Ts~Ltg~aA~~ll~l~wle~~LiGAiVgSTDA 133 (574)
T COG3263 73 FDGGFGTQLSSFRVAAGPALSLATLGVLITSGLTGVAAAYLLNLDWLEGLLIGAIVGSTDA 133 (574)
T ss_pred hcCccCCcHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHhhccccH
Confidence 335777777776553 455556666667777777778889999999999999987665433
No 225
>PF13514 AAA_27: AAA domain
Probab=56.69 E-value=3.4e+02 Score=36.53 Aligned_cols=88 Identities=22% Similarity=0.200 Sum_probs=49.2
Q ss_pred hhhHHHHHhhhHHHHHHHHHhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhh
Q 001810 266 EDGLLLAAENDIKECQANLANCETELRRLQSKKEELQKEVDRLNEVAEKAQMNALKAEEDVANIMLLAEQAVAFEIEATQ 345 (1010)
Q Consensus 266 ~~~~~~~a~~~~~~~~~~l~~~~~~l~~~~~~~~~lq~~~~~l~~~~~~a~~~a~~a~~~~~~~m~~ae~av~~e~ea~~ 345 (1010)
+-..-+...+.+.+....+..++.++.++..+..++..+....-..+.. .++++..+..|+..+..--++.+
T Consensus 602 ~~~~Wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~--------~~~l~~~l~~a~~~~~~~~~~~~ 673 (1111)
T PF13514_consen 602 EMRDWLARREAALEAAEELRAARAELEALRARRAAARAALAAALAALGP--------AEELAALLEEAEALLEEWEQAAA 673 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc--------cccHHHHHHHHHHHHHHHHHHHH
Confidence 3355666666667777777777777777766666665554332222111 55666666666666544444444
Q ss_pred hcccHHHHHHHHHHhh
Q 001810 346 RVNDAEIALQRAEKSL 361 (1010)
Q Consensus 346 ~~~~~e~~l~~~~~~~ 361 (1010)
+....+..++++++.+
T Consensus 674 ~~~~l~~~~~~~~~~~ 689 (1111)
T PF13514_consen 674 RREQLEEELQQLEQEL 689 (1111)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4444444455554443
No 226
>PRK15475 oxaloacetate decarboxylase subunit beta; Provisional
Probab=55.90 E-value=4.2e+02 Score=31.58 Aligned_cols=54 Identities=17% Similarity=0.249 Sum_probs=35.2
Q ss_pred chhHHHHHHHHHHHcCCCchhHHHHHHHHh-HHHHHHHHHHHHhhcccChhhhhh
Q 001810 843 GLSMALGAFLAGLLLAETEFSLQVESDIAP-YRGLLLGLFFMTVGMSIDPKLLLS 896 (1010)
Q Consensus 843 GlSgvLGAFiAGLiLs~~~~~~~L~e~l~~-i~~~f~PLFFVlIGl~Ldl~~L~~ 896 (1010)
...+++|.+..|-.+++...-+++.+..+. +......+.=+.+|....-+.+..
T Consensus 282 ~a~PLiGmlmfGNllrEsGVv~rLs~taqn~L~nivTIfLGl~VGa~~~A~~FL~ 336 (433)
T PRK15475 282 DAAPLLGMFCFGNLMRESGVVERLSDTVQNGLINIVTIFLGLSVGAKLVADKFLQ 336 (433)
T ss_pred cHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHhhCC
Confidence 446899999999999987765555543332 344444455566777776555543
No 227
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=55.80 E-value=6.7e+02 Score=34.49 Aligned_cols=34 Identities=35% Similarity=0.529 Sum_probs=14.4
Q ss_pred hhHHHHHHHHHhhHHHHHHHhhhHHHHHHHHHHH
Q 001810 275 NDIKECQANLANCETELRRLQSKKEELQKEVDRL 308 (1010)
Q Consensus 275 ~~~~~~~~~l~~~~~~l~~~~~~~~~lq~~~~~l 308 (1010)
+++.+++..+...+.+++.++.++.+++.+..+|
T Consensus 319 ~~~~~le~e~~~l~~el~~l~~~~~~l~~e~gkl 352 (1311)
T TIGR00606 319 RELVDCQRELEKLNKERRLLNQEKTELLVEQGRL 352 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444444444444
No 228
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=55.73 E-value=2.6e+02 Score=29.18 Aligned_cols=33 Identities=21% Similarity=0.472 Sum_probs=15.1
Q ss_pred HHHHHHhhHHHHHHHhhhHHHHHHHHHHHHHHH
Q 001810 280 CQANLANCETELRRLQSKKEELQKEVDRLNEVA 312 (1010)
Q Consensus 280 ~~~~l~~~~~~l~~~~~~~~~lq~~~~~l~~~~ 312 (1010)
-+....+-+.++++++..+..+++.+..+++..
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~ 188 (191)
T PF04156_consen 156 SREEVQELRSQLERLQENLQQLEEKIQELQELL 188 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444555555555544444443
No 229
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=55.63 E-value=2.9e+02 Score=29.58 Aligned_cols=82 Identities=22% Similarity=0.300 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCcccccCCCCcchhhHHHHHhhhHHHHHHHHHhhHHHHHHHhhh
Q 001810 218 EAVHKATMALSLAEARLQVAIESLQDVKQEDDYPEGSTEDDAKSDGKEEDGLLLAAENDIKECQANLANCETELRRLQSK 297 (1010)
Q Consensus 218 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~l~~~~~~l~~~~~~ 297 (1010)
++|+.+-..-..+...+|.+...++-.+...+....+..+ ..+-+..++.+|.+.+.....++.++.++..
T Consensus 121 ~svk~~l~~R~~~~~~~~~a~~~l~kkk~~~~kl~~~~~~--------~~~k~~~~~~ei~~~~~~~~~~~~~~~~is~- 191 (236)
T PF09325_consen 121 ESVKEALNRRDKKLIEYQNAEKELQKKKAQLEKLKASGKN--------RQDKVEQAENEIEEAERRVEQAKDEFEEISE- 191 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchh--------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 3444333333444555666666666666666655555321 1455667788888888888888888877753
Q ss_pred HHHHHHHHHHHHH
Q 001810 298 KEELQKEVDRLNE 310 (1010)
Q Consensus 298 ~~~lq~~~~~l~~ 310 (1010)
.+.+|+.|.+.
T Consensus 192 --~~k~E~~rf~~ 202 (236)
T PF09325_consen 192 --NIKKELERFEK 202 (236)
T ss_pred --HHHHHHHHHHH
Confidence 36677777654
No 230
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=55.38 E-value=2e+02 Score=37.22 Aligned_cols=35 Identities=17% Similarity=0.285 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 001810 209 IVNEECIAKEAVHKATMALSLAEARLQVAIESLQD 243 (1010)
Q Consensus 209 ~~~~e~~a~~~~~~~~~~~~~a~~~~~~~~~~~~~ 243 (1010)
|+..-..-++-+..|...+.-.+.++...++.|+.
T Consensus 493 iA~~~Glp~~ii~~A~~~~~~~~~~~~~li~~l~~ 527 (782)
T PRK00409 493 IAKRLGLPENIIEEAKKLIGEDKEKLNELIASLEE 527 (782)
T ss_pred HHHHhCcCHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 33333344444555555444444444444444444
No 231
>COG1784 Predicted membrane protein [Function unknown]
Probab=55.20 E-value=4.3e+02 Score=31.44 Aligned_cols=26 Identities=27% Similarity=0.189 Sum_probs=17.3
Q ss_pred HHHHHHhchhHHHHHHHHHHHcCCCc
Q 001810 836 SLLTARAGLSMALGAFLAGLLLAETE 861 (1010)
Q Consensus 836 ~llAe~lGlSgvLGAFiAGLiLs~~~ 861 (1010)
|...-.+|+.-...|...|+..+...
T Consensus 351 ~~~~gf~gl~v~~~A~~iG~lap~~g 376 (395)
T COG1784 351 YLLMGFIGLGVLGTAIAIGALAPFSG 376 (395)
T ss_pred HHHHhHHHHHHHHHHHHHHhcchhhc
Confidence 55555667777777777777776543
No 232
>PF08838 DUF1811: Protein of unknown function (DUF1811); InterPro: IPR014938 This entry consists uncharacterised bacterial proteins. Some of the proteins are annotated as being transcriptional regulators (see Q4MQL7 from SWISSPROT, Q65MA2 from SWISSPROT). The structure of one of the proteins has revealed a beta-barrel like structure with helix-turn-helix like motif. ; PDB: 2YXY_A 1SF9_A.
Probab=55.19 E-value=14 Score=35.84 Aligned_cols=27 Identities=41% Similarity=0.548 Sum_probs=21.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 001810 297 KKEELQKEVDRLNEVAEKAQMNALKAE 323 (1010)
Q Consensus 297 ~~~~lq~~~~~l~~~~~~a~~~a~~a~ 323 (1010)
-+.|||.|+.+|+|+|.||++.----|
T Consensus 8 s~~EL~~Ei~~L~ekarKAEq~G~~nE 34 (102)
T PF08838_consen 8 SEEELRQEIARLKEKARKAEQLGIVNE 34 (102)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHCT-HHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCccH
Confidence 468999999999999999987654333
No 233
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=54.93 E-value=3.9e+02 Score=30.84 Aligned_cols=35 Identities=26% Similarity=0.446 Sum_probs=15.0
Q ss_pred hHHHHHHHHHhhHHHHHHHhhhHHHHHHHHHHHHH
Q 001810 276 DIKECQANLANCETELRRLQSKKEELQKEVDRLNE 310 (1010)
Q Consensus 276 ~~~~~~~~l~~~~~~l~~~~~~~~~lq~~~~~l~~ 310 (1010)
++...++.|+..+.+++..+.+..+||+++.++++
T Consensus 210 eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~ 244 (325)
T PF08317_consen 210 ELEALRQELAEQKEEIEAKKKELAELQEELEELEE 244 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444444444444444443
No 234
>PRK15476 oxaloacetate decarboxylase subunit beta; Provisional
Probab=54.77 E-value=4.4e+02 Score=31.44 Aligned_cols=54 Identities=17% Similarity=0.249 Sum_probs=35.4
Q ss_pred chhHHHHHHHHHHHcCCCchhHHHHHHHHh-HHHHHHHHHHHHhhcccChhhhhh
Q 001810 843 GLSMALGAFLAGLLLAETEFSLQVESDIAP-YRGLLLGLFFMTVGMSIDPKLLLS 896 (1010)
Q Consensus 843 GlSgvLGAFiAGLiLs~~~~~~~L~e~l~~-i~~~f~PLFFVlIGl~Ldl~~L~~ 896 (1010)
...+++|.+..|-.+++...-+++.+..+. +..+...+.=+.+|....-+.+..
T Consensus 282 ~a~PLiGmlmfGNllrEsGVv~rLs~taqn~L~nivTIfLGl~VGa~~~A~~FL~ 336 (433)
T PRK15476 282 DAAPLLGMFCFGNLMRESGVVERLSDTVQNGLINIVTIFLGLSVGAKLVADKFLQ 336 (433)
T ss_pred cHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHhhCC
Confidence 446899999999999987765555544333 344444455566777776555543
No 235
>PRK15136 multidrug efflux system protein EmrA; Provisional
Probab=53.79 E-value=2.3e+02 Score=33.38 Aligned_cols=24 Identities=17% Similarity=0.213 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 001810 216 AKEAVHKATMALSLAEARLQVAIE 239 (1010)
Q Consensus 216 a~~~~~~~~~~~~~a~~~~~~~~~ 239 (1010)
++..++.|...+..|+..+++...
T Consensus 125 ~~a~l~~a~a~l~~a~~~~~R~~~ 148 (390)
T PRK15136 125 YQANIELQKTALAQAQSDLNRRVP 148 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455555566655555443
No 236
>TIGR01541 tape_meas_lam_C phage tail tape measure protein, lambda family. This model represents a relatively well-conserved region near the C-terminus of the tape measure protein of a lambda and related phage. This protein, which controls phage tail length, is typically about 1000 residues in length. Both low-complexity sequence and insertion/deletion events appear common in this family. Mutational studies suggest a ruler or template role in the determination of phage tail length. Similar behavior is attributed to proteins from distantly related or unrelated families in other phage.
Probab=53.68 E-value=4.2e+02 Score=30.91 Aligned_cols=72 Identities=13% Similarity=-0.017 Sum_probs=37.5
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHhchhHHHHHHHhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001810 159 NAMKELEVAQLNSTMFEEKAQRISEAAIALKDEAANAWNNVNVTLDMVHEIVNEECIAKEAVHKATMALSLAEARLQVAI 238 (1010)
Q Consensus 159 ~a~~~le~a~~~~~~~e~~~~~~~~~ai~~~d~~~~~~~~~~~~~~~~~~~~~~e~~a~~~~~~~~~~~~~a~~~~~~~~ 238 (1010)
-++-+++.+.++.+-.-...|+++..-=.+- .+|..++ +..+|...|.+-..+.+.+..+..|++...
T Consensus 3 ~~~~~~q~a~~~lk~~~~~~qk~l~~~~~l~----~~~~k~~--------~~~e~~~~k~~~~~~~~~~~~~~~~~~~~~ 70 (332)
T TIGR01541 3 LLLLTQQIADRKLKKLNTADEKSLQSRSDEI----IALIKLE--------KLLEEAERKALEALKKLAEATASIRAQNKR 70 (332)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH----HHHHHHH--------HHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 3556677777776666666666665433322 2345544 222333333333334556666666666655
Q ss_pred HHhh
Q 001810 239 ESLQ 242 (1010)
Q Consensus 239 ~~~~ 242 (1010)
+-..
T Consensus 71 ~la~ 74 (332)
T TIGR01541 71 QLDR 74 (332)
T ss_pred HHHh
Confidence 5444
No 237
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=53.42 E-value=88 Score=40.03 Aligned_cols=57 Identities=26% Similarity=0.352 Sum_probs=33.7
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH----------HHHHHHHHHHHHHHhhh
Q 001810 290 ELRRLQSKKEELQKEVDRLNEVAEKAQMNALKAEEDVANI----------MLLAEQAVAFEIEATQR 346 (1010)
Q Consensus 290 ~l~~~~~~~~~lq~~~~~l~~~~~~a~~~a~~a~~~~~~~----------m~~ae~av~~e~ea~~~ 346 (1010)
+|++++.+++.+|..-.+|.|+-|.|...-.+=+.-+.++ ++-||++-+.||+..+.
T Consensus 580 ~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~~~vl~~l~~~~P~LS~AEr~~~~EL~~~~~ 646 (717)
T PF10168_consen 580 ELQELQEERKSLRESAEKLAERYEEAKDKQEKLMKRVDRVLQLLNSQLPVLSEAEREFKKELERMKD 646 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHH
Confidence 4555556666666665555555555544443333333333 56789999999886543
No 238
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=52.97 E-value=2e+02 Score=27.85 Aligned_cols=40 Identities=13% Similarity=0.256 Sum_probs=20.8
Q ss_pred hhHHHHHhhhHHHHHHHHHhhHHHHHHHhhhHHHHHHHHH
Q 001810 267 DGLLLAAENDIKECQANLANCETELRRLQSKKEELQKEVD 306 (1010)
Q Consensus 267 ~~~~~~a~~~~~~~~~~l~~~~~~l~~~~~~~~~lq~~~~ 306 (1010)
+++...=.+.+..|+..+..|+.++..++.+..++|+++.
T Consensus 66 ~e~~~~l~~r~e~ie~~i~~lek~~~~l~~~l~e~q~~l~ 105 (110)
T TIGR02338 66 EEAIQELKEKKETLELRVKTLQRQEERLREQLKELQEKIQ 105 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444445555555555555555555555555555443
No 239
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=52.77 E-value=52 Score=29.95 Aligned_cols=46 Identities=22% Similarity=0.350 Sum_probs=36.2
Q ss_pred HHhhhHHHHHHHHHhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Q 001810 272 AAENDIKECQANLANCETELRRLQSKKEELQKEVDRLNEVAEKAQM 317 (1010)
Q Consensus 272 ~a~~~~~~~~~~l~~~~~~l~~~~~~~~~lq~~~~~l~~~~~~a~~ 317 (1010)
..+.++++-+..+...+.|++.+|.+..+|+.|+++|+....-.++
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~l~~en~~L~~ei~~l~~~~rIe~~ 66 (85)
T TIGR02209 21 SAQHQTRQLNNELQKLQLEIDKLQKEWRDLQLEVAELSRHERIEKI 66 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHH
Confidence 4456778888889999999999999999999999888765444333
No 240
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=51.08 E-value=92 Score=32.91 Aligned_cols=37 Identities=30% Similarity=0.389 Sum_probs=29.6
Q ss_pred HHHHhhhHHHHHHHHHhhHHHHHHHhhhHHHHHHHHH
Q 001810 270 LLAAENDIKECQANLANCETELRRLQSKKEELQKEVD 306 (1010)
Q Consensus 270 ~~~a~~~~~~~~~~l~~~~~~l~~~~~~~~~lq~~~~ 306 (1010)
.....+||++-+..|...|.+++.++.+.+.||+|-|
T Consensus 156 ~~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l~~eyd 192 (192)
T PF05529_consen 156 NKKLSEEIEKLKKELEKKEKEIEALKKQSEGLQKEYD 192 (192)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 3445677888888888888999999999999988854
No 241
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=50.97 E-value=4.9e+02 Score=31.24 Aligned_cols=23 Identities=9% Similarity=0.154 Sum_probs=16.2
Q ss_pred HhhhcccHHHHHHHHHHhhcCCC
Q 001810 343 ATQRVNDAEIALQRAEKSLSNSS 365 (1010)
Q Consensus 343 a~~~~~~~e~~l~~~~~~~~~~~ 365 (1010)
+.++++.++..|.+++..+....
T Consensus 296 ~~~~l~~~~~~l~~a~~~l~~~~ 318 (457)
T TIGR01000 296 LNQKLLELESKIKSLKEDSQKGV 318 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCE
Confidence 34567777888888888776544
No 242
>PRK03918 chromosome segregation protein; Provisional
Probab=50.93 E-value=6.7e+02 Score=32.45 Aligned_cols=23 Identities=39% Similarity=0.699 Sum_probs=10.1
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHH
Q 001810 290 ELRRLQSKKEELQKEVDRLNEVA 312 (1010)
Q Consensus 290 ~l~~~~~~~~~lq~~~~~l~~~~ 312 (1010)
++..++.++.++++++.+|+++.
T Consensus 260 ~i~~l~~el~~l~~~l~~l~~~~ 282 (880)
T PRK03918 260 KIRELEERIEELKKEIEELEEKV 282 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444443
No 243
>PF05262 Borrelia_P83: Borrelia P83/100 protein; InterPro: IPR007926 This family consists of several Borrelia P83/P100 antigen proteins.
Probab=50.08 E-value=1.9e+02 Score=35.43 Aligned_cols=17 Identities=18% Similarity=0.247 Sum_probs=8.2
Q ss_pred CcHHHHHHHHHHHHHHH
Q 001810 149 TTDELRELLMNAMKELE 165 (1010)
Q Consensus 149 ~~~~l~~~l~~a~~~le 165 (1010)
.+|.-|++.....++-+
T Consensus 193 ~~~~rk~m~D~KEreae 209 (489)
T PF05262_consen 193 GIDKRKDMVDIKEREAE 209 (489)
T ss_pred ChhhhhhhHHHHHHHhH
Confidence 45555555555333333
No 244
>TIGR00793 kdgT 2-keto-3-deoxygluconate transporter. This family includes the characterized 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both gram-positive and gram-negative bacteria.
Probab=49.94 E-value=60 Score=37.31 Aligned_cols=75 Identities=12% Similarity=0.137 Sum_probs=50.1
Q ss_pred HHHHHHHHHhhcccccccccCchhHHHHHHHHHHHHHHHHhhcCChhHHHhchhhHHHHHHHHHHHHHHHHHHHHHHhc
Q 001810 629 VLGYLAAGILIGPYGLSIIRHVHGTKAIAEFGVVFLLFNIGLELSVERLSSMKKYVFGLGSAQVLVTAVVVGLVAHFVS 707 (1010)
Q Consensus 629 vVG~ILaGILLGP~gLglI~~~~~le~LaeLGLi~LLF~aGLEidl~~Lrr~~k~il~LAlv~vllt~~~Vg~la~~l~ 707 (1010)
.+..++.|+++|+....+ .+.+.--..+.++|+-|..|..+|++.+.+-+-.-+++++.-++++. ...++++.+.
T Consensus 174 ~ilPlliG~ilGNLD~~~---r~fl~~~~~~lIpFf~FaLGaginl~~i~~aGl~GIlLGl~v~~vtG-~~~~~~dr~~ 248 (314)
T TIGR00793 174 AVLPFLVGFALGNLDPEL---RDFFSKAVQTLIPFFAFALGNTIDLGVIIQTGLLGILLGVSVIILTG-IPLILADKFI 248 (314)
T ss_pred HHHHHHHHHHHhcCCHHH---HHHhccCCCeeeehhhhhhcCCCCHHHHHHhCcchHHHHHHHHHHHh-HHHHHHHHHh
Confidence 356788999999752211 11111122345778899999999999999888888888877666654 3445555554
No 245
>PRK10698 phage shock protein PspA; Provisional
Probab=49.27 E-value=3.1e+02 Score=30.05 Aligned_cols=48 Identities=17% Similarity=0.186 Sum_probs=32.8
Q ss_pred HHHHhhhHHHHHHHHHhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Q 001810 270 LLAAENDIKECQANLANCETELRRLQSKKEELQKEVDRLNEVAEKAQM 317 (1010)
Q Consensus 270 ~~~a~~~~~~~~~~l~~~~~~l~~~~~~~~~lq~~~~~l~~~~~~a~~ 317 (1010)
...|=.+.+.|+..++.++.++...+...++|+..+.+|..+-+.++.
T Consensus 87 Ar~AL~~K~~~~~~~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~ 134 (222)
T PRK10698 87 ARAALIEKQKLTDLIATLEHEVTLVDETLARMKKEIGELENKLSETRA 134 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445666777777777777777777777777777777776665543
No 246
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=49.00 E-value=6.2e+02 Score=31.51 Aligned_cols=60 Identities=25% Similarity=0.274 Sum_probs=40.7
Q ss_pred hHHHHHHHhhhHhHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhhhhccCCC
Q 001810 190 DEAANAWNNVNVTLDMVHEIVNEECIAKEAVHKATMAL----SLAEARLQVAIESLQDVKQEDD 249 (1010)
Q Consensus 190 d~~~~~~~~~~~~~~~~~~~~~~e~~a~~~~~~~~~~~----~~a~~~~~~~~~~~~~~~~~~~ 249 (1010)
|++...-.++..-+|.+-+++.+|..||..|.+-.-.+ .-++...+.-..-++..++.+.
T Consensus 274 ~~~~~~~~~i~~~Id~lYd~le~E~~Ak~~V~~~~~~l~~~l~~~~~~~~~l~~e~~~v~~sY~ 337 (560)
T PF06160_consen 274 DEVEEENEEIEERIDQLYDILEKEVEAKKYVEKNLKELYEYLEHAKEQNKELKEELERVSQSYT 337 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 56777778888999999999999999999998654433 3334444444444444444443
No 247
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=48.86 E-value=6.7e+02 Score=32.37 Aligned_cols=35 Identities=26% Similarity=0.397 Sum_probs=24.9
Q ss_pred HHHHHHHhhHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 001810 279 ECQANLANCETELRRLQSKKEELQKEVDRLNEVAE 313 (1010)
Q Consensus 279 ~~~~~l~~~~~~l~~~~~~~~~lq~~~~~l~~~~~ 313 (1010)
+-...|..|+.+|+.++.+.+++.++.++.....+
T Consensus 636 ~~~~EL~~~~~~l~~l~~si~~lk~k~~~Q~~~i~ 670 (717)
T PF10168_consen 636 EFKKELERMKDQLQDLKASIEQLKKKLDYQQRQIE 670 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33355777888888888888888888877655444
No 248
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=48.81 E-value=4.8e+02 Score=30.16 Aligned_cols=135 Identities=16% Similarity=0.162 Sum_probs=74.0
Q ss_pred HHHHHHHHHHHHHHhchhHHHHHHHhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCC
Q 001810 173 MFEEKAQRISEAAIALKDEAANAWNNVNVTLDMVHEIVNEECIAKEAVHKATMALSLAEARLQVAIESLQDVKQEDDYPE 252 (1010)
Q Consensus 173 ~~e~~~~~~~~~ai~~~d~~~~~~~~~~~~~~~~~~~~~~e~~a~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 252 (1010)
+|-.+++.--|.||.+-|.-+.--.... .+..+| +......+.+......-.+.=.+.+..-....++.-......+.
T Consensus 38 ~~yQ~~EQAr~~A~~fA~~ld~~~~kl~-~Ms~~q-l~~~~~k~~~si~~q~~~i~~l~~~i~~l~~~i~~y~~~~~~~~ 115 (301)
T PF06120_consen 38 YFYQNAEQARQEAIEFADSLDELKEKLK-EMSSTQ-LRANIAKAEESIAAQKRAIEDLQKKIDSLKDQIKNYQQQLAEKG 115 (301)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHH-hcCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 4557788888888877665443222221 222222 33445556666665555555555555444444431110001111
Q ss_pred CCcccccCCCCcchhhHHHHHhhhHHHHHHHHHhhHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 001810 253 GSTEDDAKSDGKEEDGLLLAAENDIKECQANLANCETELRRLQSKKEELQKEVDRLNEVAE 313 (1010)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~l~~~~~~l~~~~~~~~~lq~~~~~l~~~~~ 313 (1010)
... ......-...+..+.++..+.+..|+.-+.+|++.++|-.+.|+.+.-+.+..-
T Consensus 116 ~~~----~~~~~n~~~~~~~~t~~la~~t~~L~~~~~~l~q~~~k~~~~q~~l~~~~~~~~ 172 (301)
T PF06120_consen 116 ITE----NGYIINHLMSQADATRKLAEATRELAVAQERLEQMQSKASETQATLNDLTEQRI 172 (301)
T ss_pred CCc----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111 011111123355677888888888888888888888888888888776666554
No 249
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=48.72 E-value=1.3e+02 Score=33.06 Aligned_cols=49 Identities=29% Similarity=0.302 Sum_probs=26.7
Q ss_pred hHHHHHhhhHHHHHHHHHhhHHHHHHHhhhHHHHHH-------HHHHHHHHHHHHH
Q 001810 268 GLLLAAENDIKECQANLANCETELRRLQSKKEELQK-------EVDRLNEVAEKAQ 316 (1010)
Q Consensus 268 ~~~~~a~~~~~~~~~~l~~~~~~l~~~~~~~~~lq~-------~~~~l~~~~~~a~ 316 (1010)
+..+...+|....++.+.+-+.+|+..|.++++|+| |-|||-|..++-|
T Consensus 151 ~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq 206 (216)
T KOG1962|consen 151 EENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQ 206 (216)
T ss_pred hhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 344455555555566666666666666666555554 4455555444433
No 250
>PRK15396 murein lipoprotein; Provisional
Probab=48.35 E-value=45 Score=30.97 Aligned_cols=42 Identities=24% Similarity=0.397 Sum_probs=24.4
Q ss_pred HHHHhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 001810 282 ANLANCETELRRLQSKKEELQKEVDRLNEVAEKAQMNALKAEEDVAN 328 (1010)
Q Consensus 282 ~~l~~~~~~l~~~~~~~~~lq~~~~~l~~~~~~a~~~a~~a~~~~~~ 328 (1010)
..|+-|-.. .+.++|+.+|+.|+.+..+++-++..+..|+.+
T Consensus 16 ~LLaGCAs~-----~kvd~LssqV~~L~~kvdql~~dv~~~~~~~~~ 57 (78)
T PRK15396 16 TLLAGCSSN-----AKIDQLSSDVQTLNAKVDQLSNDVNAMRSDVQA 57 (78)
T ss_pred HHHHHcCCc-----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356777653 356666667776666666555555555444443
No 251
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=48.15 E-value=4.5e+02 Score=33.14 Aligned_cols=39 Identities=18% Similarity=0.285 Sum_probs=27.9
Q ss_pred CCCCCcHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Q 001810 145 AEPPTTDELRELLMNAMKELEVAQLNSTMFEEKAQRISE 183 (1010)
Q Consensus 145 ~~~~~~~~l~~~l~~a~~~le~a~~~~~~~e~~~~~~~~ 183 (1010)
....++++|++-|+..+.+.+..+-.-.++..+.+++-+
T Consensus 325 ~~~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~ 363 (594)
T PF05667_consen 325 EQEQELEELQEQLDELESQIEELEAEIKMLKSSLKQLEE 363 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345568888888888888888877777777666555433
No 252
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=48.12 E-value=53 Score=40.74 Aligned_cols=49 Identities=24% Similarity=0.358 Sum_probs=40.8
Q ss_pred HHHHHhhhHHHHHHHHHhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Q 001810 269 LLLAAENDIKECQANLANCETELRRLQSKKEELQKEVDRLNEVAEKAQM 317 (1010)
Q Consensus 269 ~~~~a~~~~~~~~~~l~~~~~~l~~~~~~~~~lq~~~~~l~~~~~~a~~ 317 (1010)
-.-+-.++|++|...+...+.|-+.|+.+.+|+++|+.+|....+.++-
T Consensus 416 ei~~~~~~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r 464 (652)
T COG2433 416 EITVYEKRIKKLEETVERLEEENSELKRELEELKREIEKLESELERFRR 464 (652)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455678899999999999999999999999999999999877666554
No 253
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=47.84 E-value=90 Score=38.13 Aligned_cols=94 Identities=19% Similarity=0.266 Sum_probs=53.7
Q ss_pred HhhhHHHHHHHHHhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH----hhhHHHHHHHHHHH-------HHHHHHHH
Q 001810 273 AENDIKECQANLANCETELRRLQSKKEELQKEVDRLNEVAEKAQMNA----LKAEEDVANIMLLA-------EQAVAFEI 341 (1010)
Q Consensus 273 a~~~~~~~~~~l~~~~~~l~~~~~~~~~lq~~~~~l~~~~~~a~~~a----~~a~~~~~~~m~~a-------e~av~~e~ 341 (1010)
.-+++++.++.+...+.++++++.++.-++++..-|+...+++.... .....+++.+.-++ +++-+.-.
T Consensus 69 ~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (525)
T TIGR02231 69 DPERLAELRKQIRELEAELRDLEDRGDALKALAKFLEDIREGLTEPIKDSAKRNEPDLKEWFQAFDFNGSEIERLLTEDR 148 (525)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44577777888888888888888888888888877777765431000 11122333222221 11222223
Q ss_pred HHhhhcccHHHHHHHHHHhhcCCCC
Q 001810 342 EATQRVNDAEIALQRAEKSLSNSSV 366 (1010)
Q Consensus 342 ea~~~~~~~e~~l~~~~~~~~~~~~ 366 (1010)
++.+...+.+..|+++++.|..+..
T Consensus 149 ~~~~~~~~~~~~l~~l~~~l~~l~~ 173 (525)
T TIGR02231 149 EAERRIRELEKQLSELQNELNALLT 173 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 4445555666666666666655543
No 254
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=47.75 E-value=1.7e+02 Score=35.78 Aligned_cols=49 Identities=24% Similarity=0.214 Sum_probs=32.4
Q ss_pred CCcchhhHHHHHhhhHHHHHHHHHhhHHHHHHHhhhHHHHHHHHHHHHH
Q 001810 262 DGKEEDGLLLAAENDIKECQANLANCETELRRLQSKKEELQKEVDRLNE 310 (1010)
Q Consensus 262 ~~~~~~~~~~~a~~~~~~~~~~l~~~~~~l~~~~~~~~~lq~~~~~l~~ 310 (1010)
+..+=.+.+..-.+.+.++.+.+.+++.+++.++.++.+||+|.++|.-
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l~~ 173 (525)
T TIGR02231 125 DLKEWFQAFDFNGSEIERLLTEDREAERRIRELEKQLSELQNELNALLT 173 (525)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 3333345555556677777777777777777777777777777665543
No 255
>PRK14011 prefoldin subunit alpha; Provisional
Probab=46.95 E-value=2.3e+02 Score=29.24 Aligned_cols=87 Identities=14% Similarity=0.239 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhccCCC---CCCCCc-----ccccCC---C-------CcchhhHHHHHhhhHHH
Q 001810 218 EAVHKATMALSLAEARLQVAIESLQDVKQEDD---YPEGST-----EDDAKS---D-------GKEEDGLLLAAENDIKE 279 (1010)
Q Consensus 218 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---~~~~~~-----~~~~~~---~-------~~~~~~~~~~a~~~~~~ 279 (1010)
+..+..-..|..|..+++-++|+|+..+...+ |...|. -.|.++ | .+.-++|..-=++.|++
T Consensus 20 e~L~~si~~L~~a~~e~~~~ie~L~~l~~~~eiLVPLg~s~yV~g~i~d~dkVlVdIGtGy~VEk~~~eA~~~~~~ri~~ 99 (144)
T PRK14011 20 QKLQEELSSIDMMKMELLKSIESMEGLKTSEEILIPLGPGAFLKAKIVDPDKAILGVGSDIYLEKDVSEVIEDFKKSVEE 99 (144)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccCCCCeEEEEcCCCcEEeEEecCCCeEEEEccCCeEEEecHHHHHHHHHHHHHH
Confidence 44555566788999999999999986432111 111111 111111 1 13345666666666777
Q ss_pred HHHHHHhhHHHHHHHhhhHHHHHHH
Q 001810 280 CQANLANCETELRRLQSKKEELQKE 304 (1010)
Q Consensus 280 ~~~~l~~~~~~l~~~~~~~~~lq~~ 304 (1010)
.+.+..++...|.+++...+++|++
T Consensus 100 l~~~~~~l~~~i~~~~~~~~~l~~~ 124 (144)
T PRK14011 100 LDKTKKEGNKKIEELNKEITKLRKE 124 (144)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777777777776666655
No 256
>PF05262 Borrelia_P83: Borrelia P83/100 protein; InterPro: IPR007926 This family consists of several Borrelia P83/P100 antigen proteins.
Probab=46.88 E-value=3.1e+02 Score=33.75 Aligned_cols=20 Identities=25% Similarity=0.270 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHhchhHHHHH
Q 001810 176 EKAQRISEAAIALKDEAANA 195 (1010)
Q Consensus 176 ~~~~~~~~~ai~~~d~~~~~ 195 (1010)
.++|.=.+.|=-.+++++..
T Consensus 206 reaeea~k~aq~~K~ea~qk 225 (489)
T PF05262_consen 206 REAEEAAKRAQEAKKEAQQK 225 (489)
T ss_pred HHhHHHHHHHHHHHHHHHHH
Confidence 33443333333344444433
No 257
>COG1269 NtpI Archaeal/vacuolar-type H+-ATPase subunit I [Energy production and conversion]
Probab=46.54 E-value=7.3e+02 Score=31.62 Aligned_cols=18 Identities=33% Similarity=0.488 Sum_probs=10.1
Q ss_pred hchhHHHHHHHHHHHcCC
Q 001810 842 AGLSMALGAFLAGLLLAE 859 (1010)
Q Consensus 842 lGlSgvLGAFiAGLiLs~ 859 (1010)
+..-+.+|.+++|+++..
T Consensus 526 ~~~~g~~~llvv~~i~~~ 543 (660)
T COG1269 526 FGAFGILGLLVVGLILVP 543 (660)
T ss_pred hhhccHHHHHHHHHHHcc
Confidence 344455556666666654
No 258
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=46.49 E-value=83 Score=35.49 Aligned_cols=57 Identities=19% Similarity=0.395 Sum_probs=43.6
Q ss_pred HHHHhhhHHHHHHHHHhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 001810 270 LLAAENDIKECQANLANCETELRRLQSKKEELQKEVDRLNEVAEKAQMNALKAEEDV 326 (1010)
Q Consensus 270 ~~~a~~~~~~~~~~l~~~~~~l~~~~~~~~~lq~~~~~l~~~~~~a~~~a~~a~~~~ 326 (1010)
+...+..+.+.+.+..+.+.|+.+|+.+.+++|++++.+++.-.+-+-+-.+.+.+.
T Consensus 33 i~~~ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI 89 (265)
T COG3883 33 IQNQDSKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEI 89 (265)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556677888999999999999999999999999999988877665544444444443
No 259
>TIGR01109 Na_pump_decarbB sodium ion-translocating decarboxylase, beta subunit. This model describes the beta subunits of sodium pump decarboxylases that include oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, and glutaconyl-CoA decarboxylase. Beta and gammma-subunits are integral membrane proteins, while alpha is membrane bound. Catalytically, the energy released by the decarboxylation reaction is coupled to the extrusion of Na+ ions across the membrane.
Probab=46.43 E-value=85 Score=36.45 Aligned_cols=106 Identities=16% Similarity=0.044 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHhhcccChhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhCC------ChHHHHHHHHHHhhHHHHHHHH
Q 001810 874 RGLLLGLFFMTVGMSIDPKLLLSNFPVITGALGLLIGGKTILVALVGRLFGV------SVISAIRTGLLLAPGGEFAFVA 947 (1010)
Q Consensus 874 ~~~f~PLFFVlIGl~Ldl~~L~~~~~~iilillvvil~K~l~v~l~~~~~gl------~~real~IGl~LaprG~vaLVL 947 (1010)
.+++=|+.|+-+|...|+.-+..++. .+++-...-++-++ +++.....|+ +.+|+..+|..=+.-|..++.+
T Consensus 62 ~~l~P~LIFlGIGAmtDFgpllanP~-~~llGaaAQ~GiF~-t~~~A~~lGf~~~~~~~~~eAAsIgIIGgADGPt~If~ 139 (354)
T TIGR01109 62 SGIAPLLIFMGIGALTDFGPLLANPR-TLLLGAAAQFGIFA-TVFGALTLNFFGIISFSLPQAAAIGIIGGADGPTAIYL 139 (354)
T ss_pred cchHHHHHHHhccHHhhhHHHHhChH-HHHHHHHHHhhHHH-HHHHHHHhCCCcccccChhhceeeeeeccCCCchhhhh
Confidence 46888899999999999988876653 22222333333333 3344445566 6688888877656666666655
Q ss_pred HHHHHhCCCCChhh-HHHHHHHHHHHHHHHHHHHHh
Q 001810 948 FGEAVNQVCFQPHT-VFLIPNGISIYLQLIMIFFFF 982 (1010)
Q Consensus 948 a~iAls~GiIs~~~-lVvlvVVlS~IItPiL~~l~~ 982 (1010)
.+.-. -.++.+-. .-.....+.=++-|++.|+.-
T Consensus 140 s~~la-p~Llg~IaVAAYsYMaLvPiiqPpimklLt 174 (354)
T TIGR01109 140 SGKLA-PELLAAIAVAAYSYMALVPIIQPPIMKALT 174 (354)
T ss_pred Hhhhh-hHHHHHHHHHHHHHHHHHhcccchHHHhhc
Confidence 43111 11111111 112222333356677777744
No 260
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=46.29 E-value=50 Score=29.30 Aligned_cols=35 Identities=26% Similarity=0.476 Sum_probs=25.5
Q ss_pred hhhHHHHHHHHHhhHHHHHHHhhhHHHHHHHHHHH
Q 001810 274 ENDIKECQANLANCETELRRLQSKKEELQKEVDRL 308 (1010)
Q Consensus 274 ~~~~~~~~~~l~~~~~~l~~~~~~~~~lq~~~~~l 308 (1010)
..++.+.+..+...+.+++.++.+.++|++|+++|
T Consensus 16 ~~~~~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 16 YSRYYQLNQEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34556666777777777777777777787777777
No 261
>TIGR00659 conserved hypothetical protein TIGR00659. Members of this small but broadly distibuted (Gram-positive, Gram-negative, and Archaeal) family appear to have multiple transmembrane segments. The function is unknown. A homolog, LrgB of Staphylococcus aureus, in the same small superfamily but in an outgroup to this subfamily, is regulated by LytSR and is suggested to act as a murein hydrolase. Of the three paralogous proteins in B. subtilis, one is a full length member of this family, one lacks the C-terminal 60 residues and has an additional 128 N-terminal residues but branches within the family in a phylogenetic tree, and one is closely related to LrgB and part of the outgroup.
Probab=46.01 E-value=4.6e+02 Score=29.11 Aligned_cols=71 Identities=13% Similarity=0.136 Sum_probs=40.0
Q ss_pred HHHHHhhcCChhHHHhchhhHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHhhhcccCcHHHHHHHHHHcC
Q 001810 664 LLFNIGLELSVERLSSMKKYVFGLGSAQVLVTAVVVGLVAHFVSGLPGPASIVIGNGLALSSTAVVLQVLQERG 737 (1010)
Q Consensus 664 LLF~aGLEidl~~Lrr~~k~il~LAlv~vllt~~~Vg~la~~l~Gls~~~ALLLGaILSaTSpAVvv~IL~elg 737 (1010)
..|..=+--+++.+|++++.++.-.+++.++. +..++...+++|.+.....-+ .-=...+++++.+-++.|
T Consensus 70 VALAvPLY~~~~~lk~~~~~Il~~~~~G~~~~-~~s~~~la~~lg~~~~i~~Sl--~pkSvTtpiAm~vs~~iG 140 (226)
T TIGR00659 70 VALAIPLYKQLPQIKKYWKEIILNVAVGSVIA-IISGTLLALLLGLGPEIIASL--LPKSVTTPIAMHVSEMIG 140 (226)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHCcCHHHHHHh--hhHHhhHHHHHHHHHHhC
Confidence 44555556678899999988777666666554 344555556667764432211 111223455555555544
No 262
>PRK14471 F0F1 ATP synthase subunit B; Provisional
Probab=45.76 E-value=2.4e+02 Score=29.06 Aligned_cols=90 Identities=24% Similarity=0.230 Sum_probs=51.9
Q ss_pred HHHhhhHHHHHHHHHhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 001810 271 LAAENDIKECQANLANCETELRRLQSKKEELQKEVDRLNEVAEKAQMNA-LKAEEDVANIMLLAEQAVAFEIEATQRVND 349 (1010)
Q Consensus 271 ~~a~~~~~~~~~~l~~~~~~l~~~~~~~~~lq~~~~~l~~~~~~a~~~a-~~a~~~~~~~m~~ae~av~~e~ea~~~~~~ 349 (1010)
..|++.-.+.+..+++.+.+|...+. |-|+-++.-.+.|++....+ .+|++++..+..-|++.+..|-+.+..--.
T Consensus 49 ~~A~~~~~ea~~~~~e~e~~l~~A~~---ea~~ii~~A~~~a~~~~~~~~~~A~~ea~~~~~~a~~~i~~ek~~a~~~l~ 125 (164)
T PRK14471 49 ASAEEARKEMQNLQADNERLLKEARA---ERDAILKEAREIKEKMIADAKEEAQVEGDKMIEQAKASIESEKNAAMAEIK 125 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555566666665554433 33444444444444444333 567888888888888888888776543222
Q ss_pred ---HHHHHHHHHHhhcC
Q 001810 350 ---AEIALQRAEKSLSN 363 (1010)
Q Consensus 350 ---~e~~l~~~~~~~~~ 363 (1010)
++.|...|+|-+..
T Consensus 126 ~~i~~la~~~a~kil~~ 142 (164)
T PRK14471 126 NQVANLSVEIAEKVLRK 142 (164)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34566666666544
No 263
>PF11727 ISG65-75: Invariant surface glycoprotein; InterPro: IPR021057 This family is found in Trypanosome species, and appears to be one of two invariant surface glycoproteins, ISG65 and ISG75, that are found in the mammalian stage of the parasitic protozoan. The sequence suggests the two families are polypeptides with N-terminal signal sequences, hydrophilic extracellular domains, single trans-membrane alpha-helices and short cytoplasmic domains. They are both expressed in the bloodstream form but not in the midgut stage. Both polypeptides are distributed over the entire surface of the parasite [, ].
Probab=45.13 E-value=1.6e+02 Score=33.44 Aligned_cols=74 Identities=23% Similarity=0.300 Sum_probs=51.1
Q ss_pred HhhhHHHHHHHHHhhHHHHHHHhhhHHHHH---------HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 001810 273 AENDIKECQANLANCETELRRLQSKKEELQ---------KEVDRLNEVAEKAQMNALKAEEDVANIMLLAEQAVAFEIEA 343 (1010)
Q Consensus 273 a~~~~~~~~~~l~~~~~~l~~~~~~~~~lq---------~~~~~l~~~~~~a~~~a~~a~~~~~~~m~~ae~av~~e~ea 343 (1010)
+....++-+..+.+-+.-.+++..+.+.|| .+++++.+..+.||....++-+.+..+|..++.....=.+|
T Consensus 57 ad~l~~~~~~~~~~i~~~~~~v~~~~~~l~~~~~~~l~~~~~~kl~~~~~~a~~~~~~~~~~a~~~~~~~~~~~~~ak~a 136 (286)
T PF11727_consen 57 ADYLVKETEDFLGDIKLHKEQVDHRVERLRSLEKGKLTDSDVKKLKEICEEAKKKNTEQLEEAKKAMEEAEETHEEAKEA 136 (286)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455556666666666677777777776 78888888888888888888777777777777665554454
Q ss_pred hhh
Q 001810 344 TQR 346 (1010)
Q Consensus 344 ~~~ 346 (1010)
+..
T Consensus 137 a~~ 139 (286)
T PF11727_consen 137 AAK 139 (286)
T ss_pred HHH
Confidence 443
No 264
>TIGR00400 mgtE Mg2+ transporter (mgtE). This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.
Probab=45.10 E-value=4.5e+02 Score=31.63 Aligned_cols=18 Identities=6% Similarity=0.008 Sum_probs=8.5
Q ss_pred cCChhHHHhchhhHHHHH
Q 001810 671 ELSVERLSSMKKYVFGLG 688 (1010)
Q Consensus 671 Eidl~~Lrr~~k~il~LA 688 (1010)
+++++..++...+-+.++
T Consensus 345 ~i~~~~~~~~~~~e~~v~ 362 (449)
T TIGR00400 345 TVKVKDFFKVILREICVS 362 (449)
T ss_pred CCccchHHHHHHHHHHHH
Confidence 446665554443333333
No 265
>PF04018 DUF368: Domain of unknown function (DUF368); InterPro: IPR007163 This is a predicted transmembrane family of unknown function. Proteins usually have between 6 and 9 predicted transmembrane segments.
Probab=45.06 E-value=5e+02 Score=29.29 Aligned_cols=32 Identities=16% Similarity=0.251 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHhhc
Q 001810 606 VLWLLLASVIFVPIFQKIPGGSPVLGYLAAGILIG 640 (1010)
Q Consensus 606 illLLl~A~ilg~Ll~Rl~gLP~vVG~ILaGILLG 640 (1010)
..-++.++.++.+++... |.++...+.|+++|
T Consensus 65 ~~gi~~~s~~i~~ll~~y---p~~t~~fF~GLIlg 96 (257)
T PF04018_consen 65 LIGILLFSKVISYLLENY---PIPTYSFFFGLILG 96 (257)
T ss_pred HHHHHHHHHHHHHHHHhC---HHHHHHHHHHHHHH
Confidence 345566677777777754 78889999999999
No 266
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=45.01 E-value=4.8e+02 Score=29.05 Aligned_cols=26 Identities=31% Similarity=0.432 Sum_probs=15.2
Q ss_pred CchhHHHHhhhcchhhhhhHHHhhhcc
Q 001810 448 PKEAEVEAEKSKNVIQTKKQEMQKDLT 474 (1010)
Q Consensus 448 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (1010)
-++--...+|+|. +|.+=++++.++.
T Consensus 174 EeeR~t~~EKnk~-lq~QL~~L~~EL~ 199 (246)
T PF00769_consen 174 EEERVTYAEKNKR-LQEQLKELKSELE 199 (246)
T ss_dssp GGC---HHHH-HH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHH-HHHHHHHHHHHHH
Confidence 3444567788876 7778777776663
No 267
>PRK10712 PTS system fructose-specific transporter subunits IIBC; Provisional
Probab=44.98 E-value=1.2e+02 Score=37.82 Aligned_cols=29 Identities=24% Similarity=0.205 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHhchhHHHHHHHHHHHcCCC
Q 001810 831 VILGTSLLTARAGLSMALGAFLAGLLLAET 860 (1010)
Q Consensus 831 l~f~~~llAe~lGlSgvLGAFiAGLiLs~~ 860 (1010)
-.|...+++... -+++||+.++|++.+..
T Consensus 301 pg~i~g~~a~~~-~~GFlG~Ilag~lagyv 329 (563)
T PRK10712 301 PGLIGGMLAVST-GSGFIGGIIAGFLAGYV 329 (563)
T ss_pred HHHHHHHHHhcC-CchHHHHHHHHHHHHHH
Confidence 334444454433 48999999999998863
No 268
>cd01118 ArsB_permease Anion permease ArsB. These permeases have been shown to export arsenate and antimonite in eubacteria and archaea. A typical ArsB permease contains 8-13 transmembrane helices and can function either independently as a chemiosmotic transporter or as a channel-forming subunit of an ATP-driven anion pump (ArsAB). The ArsAB complex is similar in many ways to ATP-binding cassette transporters, which have two groups of six transmembrane-spanning helical segments and two nucleotide-binding domains. The ArsB proteins belong to the ArsB/NhaD superfamily of permeases that translocate sodium, arsenate, sulfate, and organic anions across biological membranes in all three kingdoms of life.
Probab=44.94 E-value=5.7e+02 Score=29.93 Aligned_cols=24 Identities=8% Similarity=0.236 Sum_probs=12.8
Q ss_pred HHHHHHHhcCCCchHHHHHHHHHhh
Q 001810 615 IFVPIFQKIPGGSPVLGYLAAGILI 639 (1010)
Q Consensus 615 ilg~Ll~Rl~gLP~vVG~ILaGILL 639 (1010)
+..++.+.. ++|..+.-+++++++
T Consensus 10 i~l~~~~~~-~i~~~~~al~~~~ll 33 (416)
T cd01118 10 LVLVIWRPF-GLPEAVWAVLGAVIA 33 (416)
T ss_pred HHHHHHccC-CCChHHHHHHHHHHH
Confidence 334555554 577665555555444
No 269
>PRK12911 bifunctional preprotein translocase subunit SecD/SecF; Reviewed
Probab=44.92 E-value=2.4e+02 Score=38.49 Aligned_cols=27 Identities=15% Similarity=0.326 Sum_probs=20.2
Q ss_pred ChHHHHHHhhhcccCcHHHHHHHHHHc
Q 001810 710 PGPASIVIGNGLALSSTAVVLQVLQER 736 (1010)
Q Consensus 710 s~~~ALLLGaILSaTSpAVvv~IL~el 736 (1010)
+...|++.-+..|.-|+.|+..=++|.
T Consensus 1293 tfIAALLTIIGYSINDTIVVFDRIREN 1319 (1403)
T PRK12911 1293 QAIGALMTVLGYSLNNTLIIFDRIRED 1319 (1403)
T ss_pred HHHHHHHHHhhccccCeEEEeHHHHHH
Confidence 467777777788888888887766544
No 270
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=44.89 E-value=2.5e+02 Score=26.14 Aligned_cols=72 Identities=18% Similarity=0.316 Sum_probs=41.2
Q ss_pred HHHHHHHHHHhhhhccCCCCCCCCcccccCCCCcchhhHHHHHhhhHHHHHHHHHhhHHHHHHHhhhHHHHHHHH
Q 001810 231 EARLQVAIESLQDVKQEDDYPEGSTEDDAKSDGKEEDGLLLAAENDIKECQANLANCETELRRLQSKKEELQKEV 305 (1010)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~l~~~~~~l~~~~~~~~~lq~~~ 305 (1010)
..+.+.+.+-|+....+...+...+.-=.. .+.+++...=.+++..|+..+.+|+.+++.++.+..+++++.
T Consensus 28 ~~~~~~~~~eL~~l~~~~~~y~~vG~~fv~---~~~~~~~~~L~~~~~~~~~~i~~l~~~~~~l~~~l~~~~~~l 99 (106)
T PF01920_consen 28 LRELELTLEELEKLDDDRKVYKSVGKMFVK---QDKEEAIEELEERIEKLEKEIKKLEKQLKYLEKKLKELKKKL 99 (106)
T ss_dssp HHHHHHHHHHHHTSSTT-EEEEEETTEEEE---EEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCcchhHHHHhHHHHH---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666643332222222211111 134566666677777777777777777777777777777654
No 271
>PRK08578 preprotein translocase subunit SecF; Reviewed
Probab=44.57 E-value=4.9e+02 Score=29.65 Aligned_cols=26 Identities=15% Similarity=0.066 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001810 793 AAVAITAIIAGGRLLLRPIYKQIAEN 818 (1010)
Q Consensus 793 vilgiii~llvg~~llr~llr~i~~~ 818 (1010)
.++++++.++...++..|++.|+.++
T Consensus 263 l~~Gli~s~~~tl~~~~~~l~~~~~~ 288 (292)
T PRK08578 263 LIFGLLADLMNTWLLNAGILRWYKTE 288 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34455556666667777888887544
No 272
>PTZ00491 major vault protein; Provisional
Probab=44.40 E-value=8.4e+02 Score=32.05 Aligned_cols=21 Identities=29% Similarity=0.453 Sum_probs=17.0
Q ss_pred HHHHHHHhhHHHHHHHhhhHH
Q 001810 279 ECQANLANCETELRRLQSKKE 299 (1010)
Q Consensus 279 ~~~~~l~~~~~~l~~~~~~~~ 299 (1010)
.|+|...+.++||++++.+.+
T Consensus 742 ra~a~~i~~~ael~~~~~~~~ 762 (850)
T PTZ00491 742 RAKALRIEAEAELEKLRKRQE 762 (850)
T ss_pred hhHHHHHhhHHHHHHHHHHHH
Confidence 578888889999998876655
No 273
>PF05082 Rop-like: Rop-like; InterPro: IPR007774 This family contains several uncharacterised bacterial proteins. These proteins are found in nitrogen fixation operons, so are likely to play a role in this process.; PDB: 3CSX_A 2JS5_B.
Probab=43.97 E-value=68 Score=28.97 Aligned_cols=58 Identities=34% Similarity=0.441 Sum_probs=40.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH-hhhHH---HHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHH
Q 001810 297 KKEELQKEVDRLNEVAEKAQMNA-LKAEE---DVANIMLLAEQAVAFEIEATQRVNDAEIALQRAE 358 (1010)
Q Consensus 297 ~~~~lq~~~~~l~~~~~~a~~~a-~~a~~---~~~~~m~~ae~av~~e~ea~~~~~~~e~~l~~~~ 358 (1010)
..+||++||.||+-+|-++.|+= .-+|+ +-.+||.+|+++. +|-+..+.+.-.|..++
T Consensus 3 d~~eLk~evkKL~~~A~~~kmdLHDLaEdLP~~w~~i~~vA~~ty----~a~~~l~~ak~~L~~~e 64 (66)
T PF05082_consen 3 DIEELKKEVKKLNRKATQAKMDLHDLAEDLPTNWEEIPEVAQKTY----DAYAELDEAKAELKAAE 64 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTTGGGHHHHHHHHH----HHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHH----HHHHHHHHHHHHHHHhh
Confidence 46899999999999999999874 34554 4467999998875 23344444444444444
No 274
>PF01970 TctA: Tripartite tricarboxylate transporter TctA family; InterPro: IPR002823 Members of this prokaryotic family have no known function. Members are predicted to be integral membrane proteins and are similar to a protein in a tartrate utilisation region (TAR) of Agrobacterium vitis a common pathogen of grapevine. Most grapevine strains utilise tartrate, an abundant compound in grapevine [].
Probab=43.91 E-value=6.5e+02 Score=30.28 Aligned_cols=62 Identities=16% Similarity=0.136 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHh-chhHHHHHHHHHHHcCCC
Q 001810 798 TAIIAGGRLLLRPIYKQIAENQNAEIFSANTLLVILGTSLLTARA-GLSMALGAFLAGLLLAET 860 (1010)
Q Consensus 798 ii~llvg~~llr~llr~i~~~~~~ei~l~ltLll~f~~~llAe~l-GlSgvLGAFiAGLiLs~~ 860 (1010)
++.++++.++.|++.+ +.+-+.+.+...+.+++..++|.....+ ++--.+..=+.|++++..
T Consensus 348 i~~~~i~~~~~~~~~~-i~~ip~~~L~~~il~~~~vgay~~~~~~~dv~v~l~~g~iG~~~~~~ 410 (419)
T PF01970_consen 348 ILMLLIGLFLARYFAK-ILKIPYRILSPIILVLCVVGAYAINGSMFDVWVMLVFGLIGYFMRRF 410 (419)
T ss_pred HHHHHHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHc
Confidence 3334444444444333 4433333333334445555555555444 666666666666666654
No 275
>PRK11637 AmiB activator; Provisional
Probab=43.76 E-value=6.3e+02 Score=30.09 Aligned_cols=25 Identities=16% Similarity=0.318 Sum_probs=11.1
Q ss_pred HhhHHHHHHHhhhHHHHHHHHHHHH
Q 001810 285 ANCETELRRLQSKKEELQKEVDRLN 309 (1010)
Q Consensus 285 ~~~~~~l~~~~~~~~~lq~~~~~l~ 309 (1010)
++-+.+...|+..+.|.|+++++|+
T Consensus 201 ~e~~~~k~~L~~~k~e~~~~l~~L~ 225 (428)
T PRK11637 201 YEQQAQQQKLEQARNERKKTLTGLE 225 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444443
No 276
>PF02447 GntP_permease: GntP family permease; InterPro: IPR003474 This is a family of integral membrane permeases that are involved in gluconate uptake. Escherichia coli contains several members of this family including GntU, a low affinity transporter [] and GntT, a high affinity transporter [].; GO: 0015128 gluconate transmembrane transporter activity, 0035429 gluconate transmembrane transport, 0016020 membrane
Probab=43.53 E-value=6.8e+02 Score=30.39 Aligned_cols=65 Identities=12% Similarity=0.148 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH--------------hcCCC-chHHHHHHHHHhhcccccccccCchhHHHHHHHHHHHHH
Q 001810 601 ASLFDVLWLLLASVIFVPIFQ--------------KIPGG-SPVLGYLAAGILIGPYGLSIIRHVHGTKAIAEFGVVFLL 665 (1010)
Q Consensus 601 ~~Ll~illLLl~A~ilg~Ll~--------------Rl~gL-P~vVG~ILaGILLGP~gLglI~~~~~le~LaeLGLi~LL 665 (1010)
..+-.+.+++.++.++|.+++ ++ |. -...+..+.|.++|-. -+.+ ...+-+..+.
T Consensus 56 ~tl~~igivI~lG~~iG~~l~~SGaa~~IA~~l~~~~-G~k~~~~A~~i~g~iv~IP--------vF~d-v~~viL~Pl~ 125 (441)
T PF02447_consen 56 STLGSIGIVIALGAMIGKLLEESGAAERIANTLLKKF-GEKRAPLALAITGFIVGIP--------VFFD-VGFVILAPLA 125 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHc-CCCcccHHHHHHHHHhhhH--------HHHH-HHHHHHHHHH
Confidence 335556677777777776663 44 32 2456677788888721 1111 2345556677
Q ss_pred HHHhhcCChh
Q 001810 666 FNIGLELSVE 675 (1010)
Q Consensus 666 F~aGLEidl~ 675 (1010)
|....+....
T Consensus 126 ~~la~~~~~s 135 (441)
T PF02447_consen 126 FSLARKTGKS 135 (441)
T ss_pred HHHHHHhCCC
Confidence 7777665543
No 277
>PF02355 SecD_SecF: Protein export membrane protein; InterPro: IPR022813 Secretion across the inner membrane in some Gram-negative bacteria occurs via the preprotein translocase pathway. Proteins are produced in the cytoplasm as precursors, and require a chaperone subunit to direct them to the translocase component []. From there, the mature proteins are either targeted to the outer membrane, or remain as periplasmic proteins. The translocase protein subunits are encoded on the bacterial chromosome. The translocase itself comprises 7 proteins, including a chaperone protein (SecB), an ATPase (SecA), an integral membrane complex (SecCY, SecE and SecG), and two additional membrane proteins that promote the release of the mature peptide into the periplasm (SecD and SecF) []. The chaperone protein SecB [] is a highly acidic homotetrameric protein that exists as a "dimer of dimers" in the bacterial cytoplasm. SecB maintains preproteins in an unfolded state after translation, and targets these to the peripheral membrane protein ATPase SecA for secretion []. Together with SecY and SecG, SecE forms a multimeric channel through which preproteins are translocated, using both proton motive forces and ATP-driven secretion. The latter is mediated by SecA. The structure of the Escherichia coli SecYEG assembly revealed a sandwich of two membranes interacting through the extensive cytoplasmic domains []. Each membrane is composed of dimers of SecYEG. The monomeric complex contains 15 transmembrane helices. The SecD and SecF equivalents of the Gram-positive bacterium Bacillus subtilis are jointly present in one polypeptide, denoted SecDF, that is required to maintain a high capacity for protein secretion. Unlike the SecD subunit of the pre-protein translocase of E. coli, SecDF of B. subtilis was not required for the release of a mature secretory protein from the membrane, indicating that SecDF is involved in earlier translocation steps []. Comparison with SecD and SecF proteins from other organisms revealed the presence of 10 conserved regions in SecDF, some of which appear to be important for SecDF function. Interestingly, the SecDF protein of B. subtilis has 12 putative transmembrane domains. Thus, SecDF does not only show sequence similarity but also structural similarity to secondary solute transporters []. This entry represents bacterial SecD and SecF protein export membrane proteins and their archaeal homologues []. It is found in association with PF07549 from PFAM SecD and SecF proteins are part of the multimeric protein export complex comprising SecA, D, E, F, G, Y, and YajC []. SecD and SecF are required to maintain a proton motive force []. ; PDB: 3AQP_A 2RRN_A 3AQO_B.
Probab=43.32 E-value=4.4e+02 Score=28.14 Aligned_cols=26 Identities=8% Similarity=0.165 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001810 792 KAAVAITAIIAGGRLLLRPIYKQIAE 817 (1010)
Q Consensus 792 ~vilgiii~llvg~~llr~llr~i~~ 817 (1010)
..++|++.+.....++.++++.|+.+
T Consensus 163 ~l~iGvi~~~~ss~~ia~~l~~~l~~ 188 (189)
T PF02355_consen 163 TLIIGVIIGTYSSLFIARPLLYWLVK 188 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34455666666666777788777653
No 278
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=42.93 E-value=5e+02 Score=28.63 Aligned_cols=37 Identities=22% Similarity=0.451 Sum_probs=15.4
Q ss_pred hhhHHHHHHHHHhhHHHHHHHhhhHHHHHHHHHHHHH
Q 001810 274 ENDIKECQANLANCETELRRLQSKKEELQKEVDRLNE 310 (1010)
Q Consensus 274 ~~~~~~~~~~l~~~~~~l~~~~~~~~~lq~~~~~l~~ 310 (1010)
+.++.+++..+.....++++++.+.++.+++++.+.+
T Consensus 62 ~~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~ 98 (302)
T PF10186_consen 62 KREIEELRERLERLRERIERLRKRIEQKRERLEELRE 98 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444444444333
No 279
>KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton]
Probab=42.67 E-value=2.8e+02 Score=34.57 Aligned_cols=73 Identities=16% Similarity=0.163 Sum_probs=56.4
Q ss_pred HHHHHhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHH
Q 001810 281 QANLANCETELRRLQSKKEELQKEVDRLNEVAEKAQMNALKAEEDVANIMLLAEQAVAFEIEATQRVNDAEIALQR 356 (1010)
Q Consensus 281 ~~~l~~~~~~l~~~~~~~~~lq~~~~~l~~~~~~a~~~a~~a~~~~~~~m~~ae~av~~e~ea~~~~~~~e~~l~~ 356 (1010)
+..-..|+++.++|+..+++.+-++++...+.++.|+...+-||--+.---+.|+--..+=|. |+ +.|-|-++
T Consensus 413 ~~~~~~~~e~~~~L~qqlD~kd~~~n~~sqL~~~lk~q~~~qee~~s~~~~~~e~~q~e~~~~-Q~--~~e~~~~e 485 (607)
T KOG0240|consen 413 EEEEDILTERIESLYQQLDQKDDQINKQSQLMEKLKEQLLDQEELLSSTRRLYEDIQQELSEI-QE--ENEAAKDE 485 (607)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHH-HH--HHHHHHHH
Confidence 455667889999999999999999999999999999999999998887766777654444343 33 44445444
No 280
>TIGR00841 bass bile acid transporter. Functionally characterized members of the BASS family catalyze Na+:bile acid symport. These systems have been identified in intestinal, liver and kidney tissues of animals. These symporters exhibit broad specificity, taking up a variety of non bile organic compounds as well as taurocholate and other bile salts. Functionally uncharacterised homologues are found in plants, yeast, archaea and bacteria.
Probab=42.56 E-value=2.5e+02 Score=31.64 Aligned_cols=100 Identities=13% Similarity=0.138 Sum_probs=47.7
Q ss_pred HHHHHHHhhcccChhhhhhh---hhhHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHH---HhhHHHHHHHHHHHH
Q 001810 878 LGLFFMTVGMSIDPKLLLSN---FPVITGALGLLIGGKTILVALVGRLFGVSVISAIRTGLL---LAPGGEFAFVAFGEA 951 (1010)
Q Consensus 878 ~PLFFVlIGl~Ldl~~L~~~---~~~iilillvvil~K~l~v~l~~~~~gl~~real~IGl~---LaprG~vaLVLa~iA 951 (1010)
..+.+..+|+++++..+... +......++.-++.-++..|...+.++.+.. ...|+. ..|.|..+.+.+...
T Consensus 14 l~~~m~~~G~~l~~~~~~~~~~~p~~~~~~~~~~~vi~Plla~~l~~~~~l~~~--~~~glvL~~~~P~~~~s~v~t~~~ 91 (286)
T TIGR00841 14 LFLIMFSMGCTLEFEDFKGHLRKPWGVIIGLLAQYGIMPLTGFLLAKVFKLPPE--LAVGVLIVGCCPGGTASNVFTYLL 91 (286)
T ss_pred HHHHHHHccCCCcHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHhCCCHH--HHHHHHheeeCCCchHHHHHHHHh
Confidence 44445566777777666442 2233444444555566666666666665432 223322 345555544433322
Q ss_pred HhCCCCChhh-HHHHHHHHHHHHHHHHHHHH
Q 001810 952 VNQVCFQPHT-VFLIPNGISIYLQLIMIFFF 981 (1010)
Q Consensus 952 ls~GiIs~~~-lVvlvVVlS~IItPiL~~l~ 981 (1010)
.|-..-.. .+....+++.++.|++..++
T Consensus 92 --~gn~~la~~~~~~stlls~vt~Pl~l~~~ 120 (286)
T TIGR00841 92 --KGDMALSISMTTCSTLLALGMMPLLLYIY 120 (286)
T ss_pred --CCCHhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 11111111 34444455555556555553
No 281
>cd07605 I-BAR_IMD Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), a dimerization module that binds and bends membranes. Inverse (I)-BAR (or IMD) is a member of the Bin/Amphiphysin/Rvs (BAR) domain family. It is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions in the opposite direction compared to classical BAR and F-BAR domains, which produce membrane invaginations. IMD domains are found in Insulin Receptor tyrosine kinase Substrate p53 (IRSp53), Missing in Metastasis (MIM), and Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2-like (BAIAP2L) proteins. These are multi-domain proteins that act as scaffolding proteins and transducers of a variety of signaling pathways that link membrane dynamics and the underlying actin cytoskeleton. Most members contain an N-terminal IMD, an SH3 domain, and a WASP homology 2 (WH2) actin-binding motif at the C-terminus, exccept for MIM which does not carry an SH3 domain. Some me
Probab=42.20 E-value=5.1e+02 Score=28.59 Aligned_cols=125 Identities=18% Similarity=0.140 Sum_probs=75.8
Q ss_pred CCCCCcHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhchhHHHHHHHhhhHhHHHHHHHHHHHHHHHHHHHHHH
Q 001810 145 AEPPTTDELRELLMNAMKELEVAQLNSTMFEEKAQRISEAAIALKDEAANAWNNVNVTLDMVHEIVNEECIAKEAVHKAT 224 (1010)
Q Consensus 145 ~~~~~~~~l~~~l~~a~~~le~a~~~~~~~e~~~~~~~~~ai~~~d~~~~~~~~~~~~~~~~~~~~~~e~~a~~~~~~~~ 224 (1010)
+..|.+++|..+-.+=.+.|-.+..=...|=+--|+|++.|.... +=.++.+.|-.|.+.-+.=..-.+.+-++.
T Consensus 17 ~~~P~~~~li~~~~~Y~kal~a~~~a~~~~~dAl~kia~~A~~s~-----~sk~lG~~L~~i~~~~r~ie~~l~~~~~~~ 91 (223)
T cd07605 17 QFNPVLRNLIKAGKKYQKALQALSQAAKVFFDALAKIGELASQSR-----GSQELGEALKQIVDTHKSIEASLEQVAKAF 91 (223)
T ss_pred ccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC-----cchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367888888887777777777777777788888999999999966 224677666655444322111111111122
Q ss_pred HHHHHHHHHHHHHHHHhhhhccCCCCCCCCcccccCCCCcchhhHHHHHhhhHHHHHHHHHhhHHHHHHHhhh
Q 001810 225 MALSLAEARLQVAIESLQDVKQEDDYPEGSTEDDAKSDGKEEDGLLLAAENDIKECQANLANCETELRRLQSK 297 (1010)
Q Consensus 225 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~l~~~~~~l~~~~~~ 297 (1010)
+---+ .|.++-. +.|.+.=......=+.|.|.+++.|..|+.++..+|.|
T Consensus 92 ~~~li-------------------~pLe~k~----e~d~k~i~~~~K~y~~E~K~~~~~l~K~~sel~Kl~KK 141 (223)
T cd07605 92 HGELI-------------------LPLEKKL----ELDQKVINKFEKDYKKEYKQKREDLDKARSELKKLQKK 141 (223)
T ss_pred HHHHH-------------------HHhhhhH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 21111 1222222 22222222333344668889999999999999988876
No 282
>smart00039 CRF corticotropin-releasing factor.
Probab=42.13 E-value=35 Score=27.89 Aligned_cols=29 Identities=34% Similarity=0.361 Sum_probs=23.2
Q ss_pred CCcHHHHHHH--HHHHHHHHHHhhhhhHHHH
Q 001810 148 PTTDELRELL--MNAMKELEVAQLNSTMFEE 176 (1010)
Q Consensus 148 ~~~~~l~~~l--~~a~~~le~a~~~~~~~e~ 176 (1010)
+.+|=||+.| .+|+++.+.|+.|+.+++.
T Consensus 9 l~~~vLR~~l~~e~a~~~~~qa~~NR~~L~~ 39 (40)
T smart00039 9 LTFDLLRQRLELEKAERRREQAQANRNFLDD 39 (40)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4578888854 6788899999999998863
No 283
>PRK07352 F0F1 ATP synthase subunit B; Validated
Probab=42.04 E-value=4.2e+02 Score=27.58 Aligned_cols=88 Identities=25% Similarity=0.300 Sum_probs=47.0
Q ss_pred HhhhHHHHHHHHHhhHHHHHHHhhhHHHHHHHHHHHHHHHHHH-HHHHhhhHHHHHHHHHHHHHHHHHHHHHhhhccc--
Q 001810 273 AENDIKECQANLANCETELRRLQSKKEELQKEVDRLNEVAEKA-QMNALKAEEDVANIMLLAEQAVAFEIEATQRVND-- 349 (1010)
Q Consensus 273 a~~~~~~~~~~l~~~~~~l~~~~~~~~~lq~~~~~l~~~~~~a-~~~a~~a~~~~~~~m~~ae~av~~e~ea~~~~~~-- 349 (1010)
|++.-.+.+..+.+++.+|.....+..++-++. ++-|++- +..-.+|++++..+..-|++.+..|-+.+..=-.
T Consensus 62 A~~~~~ea~~~~~~~~~~L~~a~~ea~~ii~~a---~~~a~~~~~~~~~~A~~e~~~~~~~a~~~i~~e~~~a~~~l~~q 138 (174)
T PRK07352 62 AEERLRQAAQALAEAQQKLAQAQQEAERIRADA---KARAEAIRAEIEKQAIEDMARLKQTAAADLSAEQERVIAQLRRE 138 (174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555555555544443333332222 2222221 1122467888888888888888888765543222
Q ss_pred -HHHHHHHHHHhhcC
Q 001810 350 -AEIALQRAEKSLSN 363 (1010)
Q Consensus 350 -~e~~l~~~~~~~~~ 363 (1010)
...|++.|+|-|..
T Consensus 139 i~~la~~~A~kil~~ 153 (174)
T PRK07352 139 AAELAIAKAESQLPG 153 (174)
T ss_pred HHHHHHHHHHHHHHh
Confidence 34567777776544
No 284
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=41.46 E-value=1.7e+02 Score=30.42 Aligned_cols=50 Identities=16% Similarity=0.350 Sum_probs=39.1
Q ss_pred hHHHHHhhhHHHHHHHHHhhHHHHHHHhh---hHHHHHHHHHHHHHHHHHHHH
Q 001810 268 GLLLAAENDIKECQANLANCETELRRLQS---KKEELQKEVDRLNEVAEKAQM 317 (1010)
Q Consensus 268 ~~~~~a~~~~~~~~~~l~~~~~~l~~~~~---~~~~lq~~~~~l~~~~~~a~~ 317 (1010)
.....+.+++...+..|..-..+|..|+. -.++||+++..|+...+++.-
T Consensus 20 ~~~~~~~~e~~~~k~ql~~~d~~i~~Lk~~~~d~eeLk~~i~~lq~~~~~~~~ 72 (155)
T PF06810_consen 20 AKVDKVKEERDNLKTQLKEADKQIKDLKKSAKDNEELKKQIEELQAKNKTAKE 72 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHH
Confidence 44445577888888888888888888887 688999999999888876543
No 285
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=41.45 E-value=7.2e+02 Score=30.09 Aligned_cols=35 Identities=34% Similarity=0.368 Sum_probs=19.0
Q ss_pred HHHHhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 001810 282 ANLANCETELRRLQSKKEELQKEVDRLNEVAEKAQ 316 (1010)
Q Consensus 282 ~~l~~~~~~l~~~~~~~~~lq~~~~~l~~~~~~a~ 316 (1010)
-++...+.+|+.-|.+.+||+.+-.+|...-.++.
T Consensus 210 k~~~~l~~~l~~~q~~l~eL~~~~~~L~~~Ias~e 244 (420)
T COG4942 210 KTLAQLNSELSADQKKLEELRANESRLKNEIASAE 244 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 34444455555555555666555555555555544
No 286
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=41.43 E-value=4e+02 Score=28.82 Aligned_cols=44 Identities=20% Similarity=0.226 Sum_probs=31.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhhccc---HHHHHHHHHHhhcC
Q 001810 320 LKAEEDVANIMLLAEQAVAFEIEATQRVND---AEIALQRAEKSLSN 363 (1010)
Q Consensus 320 ~~a~~~~~~~m~~ae~av~~e~ea~~~~~~---~e~~l~~~~~~~~~ 363 (1010)
.+|++++..++.-|++.+..|.+.+.+--. ++.|.+-|+|-+..
T Consensus 136 ~~A~~eae~ii~~A~~~Ie~Ek~~a~~~Lk~ei~~lAv~iA~kiL~k 182 (205)
T PRK06231 136 KEANRQANLIIFQARQEIEKERRELKEQLQKESVELAMLAAEELIKK 182 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 378888888999999888888877643333 34567777776654
No 287
>PF03812 KdgT: 2-keto-3-deoxygluconate permease; InterPro: IPR004684 This family includes the characterised 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both Gram-positive and Gram-negative bacteria. In E. chrysanthemi, a phytopathogenic bacterium, degraded pectin products from plant cell walls are transported by 2-keto-3-deoxygluconate permease into the bacterial cell to provide a carbon and energy source []. 2-keto-3-deoxygluconate permease can mediate the uptake of glucuronate with a low affinity [].; GO: 0015649 2-keto-3-deoxygluconate:hydrogen symporter activity, 0008643 carbohydrate transport, 0046411 2-keto-3-deoxygluconate transport, 0016021 integral to membrane
Probab=41.24 E-value=80 Score=36.39 Aligned_cols=74 Identities=16% Similarity=0.159 Sum_probs=49.0
Q ss_pred HHHHHHHHHhhcccccccccCchhHHHHHHHHHHHHHHHHhhcCChhHHHhchhhHHHHHHHHHHHHHHHHHHHHHHh
Q 001810 629 VLGYLAAGILIGPYGLSIIRHVHGTKAIAEFGVVFLLFNIGLELSVERLSSMKKYVFGLGSAQVLVTAVVVGLVAHFV 706 (1010)
Q Consensus 629 vVG~ILaGILLGP~gLglI~~~~~le~LaeLGLi~LLF~aGLEidl~~Lrr~~k~il~LAlv~vllt~~~Vg~la~~l 706 (1010)
.+..++.|+++|+..-.+ .+.+.--..+.++|+-|..|..+|+..+.+-+-.-++++++-++++.+ ..+++..+
T Consensus 174 ~llP~iiG~iLGNLD~~~---r~fl~~~~~~lIPF~~f~lGa~inl~~i~~aGl~GIlLgv~~~~vtg~-~~~~~dr~ 247 (314)
T PF03812_consen 174 ALLPIIIGMILGNLDPDF---RKFLAPGVPILIPFFGFALGAGINLSNIIKAGLSGILLGVIVVVVTGI-PLYLADRL 247 (314)
T ss_pred HHHHHHHHHHHhcCCHHH---HHHHhcCCCeeeehhhhhhcCCCCHHHHHHhCcchHHHHHHHHHHHhH-HHHHHHHH
Confidence 356788999999752111 111122223457788999999999999999988888888876665533 33444444
No 288
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=41.20 E-value=5.9e+02 Score=29.02 Aligned_cols=49 Identities=18% Similarity=0.317 Sum_probs=35.8
Q ss_pred CCcchhhHHHHHhhhHHHHHHHHHhhHHHHHHHhhhHHHHHHHHHHHHH
Q 001810 262 DGKEEDGLLLAAENDIKECQANLANCETELRRLQSKKEELQKEVDRLNE 310 (1010)
Q Consensus 262 ~~~~~~~~~~~a~~~~~~~~~~l~~~~~~l~~~~~~~~~lq~~~~~l~~ 310 (1010)
+.++.|+.+--+++-|.+|.+.|++.+.+-.|+..+..-++-+|.+.+.
T Consensus 215 eL~~~Eke~~e~~~~i~e~~~rl~~l~~~~~~l~k~~~~~~sKV~kf~~ 263 (269)
T PF05278_consen 215 ELKQKEKEVKEIKERITEMKGRLGELEMESTRLSKTIKSIKSKVEKFHG 263 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3444667777777777778788887777777777777777777777653
No 289
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=41.03 E-value=1.2e+02 Score=29.69 Aligned_cols=39 Identities=21% Similarity=0.319 Sum_probs=25.4
Q ss_pred hhHHHHHHHHHhhHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 001810 275 NDIKECQANLANCETELRRLQSKKEELQKEVDRLNEVAE 313 (1010)
Q Consensus 275 ~~~~~~~~~l~~~~~~l~~~~~~~~~lq~~~~~l~~~~~ 313 (1010)
+-++.++.++.+++.+++.++....++++++..+.+.++
T Consensus 86 eA~~~l~~~~~~l~~~~~~l~~~l~~l~~~~~~i~~~l~ 124 (126)
T TIGR00293 86 EAIEFLKKRIEELEKAIEKLQEALAELASRAQQLEQEAQ 124 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334455566666677777777777777777777666544
No 290
>TIGR00914 2A0601 heavy metal efflux pump (cobalt-zinc-cadmium). This model represents a family of H+/heavy metal cation antiporters. This family is one of several subfamilies within the scope of pfam model pfam00873.
Probab=40.98 E-value=8.3e+02 Score=32.80 Aligned_cols=26 Identities=0% Similarity=-0.003 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccc
Q 001810 962 VFLIPNGISIYLQLIMIFFFFNCGLL 987 (1010)
Q Consensus 962 lVvlvVVlS~IItPiL~~l~~~~~r~ 987 (1010)
-++...++|.++.|.+..+..++++.
T Consensus 1016 gl~~s~~~tL~~vP~l~~~~~~~~~~ 1041 (1051)
T TIGR00914 1016 GIITATLLTLFVLPALYRLVHRRRHK 1041 (1051)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 35667788888899999886655443
No 291
>PRK15476 oxaloacetate decarboxylase subunit beta; Provisional
Probab=40.96 E-value=51 Score=38.76 Aligned_cols=75 Identities=23% Similarity=0.108 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHhhcccChhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHh-----hCCChHHHHHHHHHHhhHHHHHHHHH
Q 001810 874 RGLLLGLFFMTVGMSIDPKLLLSNFPVITGALGLLIGGKTILVALVGRL-----FGVSVISAIRTGLLLAPGGEFAFVAF 948 (1010)
Q Consensus 874 ~~~f~PLFFVlIGl~Ldl~~L~~~~~~iilillvvil~K~l~v~l~~~~-----~gl~~real~IGl~LaprG~vaLVLa 948 (1010)
.+++=|+.|+-+|...|+.-+..++.. +++-...-++-|+....+..+ .|++.+|+..+|+.=+.=|..++.+.
T Consensus 133 ~gi~P~LIF~GIGAMtDFgpLlanP~~-~llGaAAQ~GIF~t~~~A~~l~~~g~~GF~~~eAAsIgIIGGADGPTsIfvs 211 (433)
T PRK15476 133 SGVAPLVIFMGVGAMTDFGPLLANPRT-LLLGAAAQFGIFATVLGALTLNYFGLISFTLPQAAAIGIIGGADGPTAIYLS 211 (433)
T ss_pred cchHHHHHHHhccHHhcchHHhhCHHH-HHHHHHHHhhHHHHHHHHHHHhhcccCCCChhhchheeeeccCCCchHHHhH
Confidence 357788899999999999888766433 333333334444433333333 37899999988887667777776665
Q ss_pred H
Q 001810 949 G 949 (1010)
Q Consensus 949 ~ 949 (1010)
.
T Consensus 212 s 212 (433)
T PRK15476 212 G 212 (433)
T ss_pred h
Confidence 4
No 292
>PRK15477 oxaloacetate decarboxylase subunit beta; Provisional
Probab=40.96 E-value=51 Score=38.76 Aligned_cols=75 Identities=23% Similarity=0.108 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHhhcccChhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHh-----hCCChHHHHHHHHHHhhHHHHHHHHH
Q 001810 874 RGLLLGLFFMTVGMSIDPKLLLSNFPVITGALGLLIGGKTILVALVGRL-----FGVSVISAIRTGLLLAPGGEFAFVAF 948 (1010)
Q Consensus 874 ~~~f~PLFFVlIGl~Ldl~~L~~~~~~iilillvvil~K~l~v~l~~~~-----~gl~~real~IGl~LaprG~vaLVLa 948 (1010)
.+++=|+.|+-+|...|+.-+..++.. +++-...-++-|+....+..+ .|++.+|+..+|+.=+.=|..++.+.
T Consensus 133 ~gi~P~LIF~GIGAMtDFgpLlanP~~-~llGaAAQ~GIF~t~~~A~~l~~~g~~GF~~~eAAsIgIIGGADGPTsIfvs 211 (433)
T PRK15477 133 SGVAPLVIFMGVGAMTDFGPLLANPRT-LLLGAAAQFGIFATVLGALTLNYFGLISFTLPQAAAIGIIGGADGPTAIYLS 211 (433)
T ss_pred cchHHHHHHHhccHHhcchHHhhCHHH-HHHHHHHHhhHHHHHHHHHHHhhcccCCCChhhchheeeeccCCCchHHHhH
Confidence 357788899999999999888766433 333333334444433333333 37899999988887667777776665
Q ss_pred H
Q 001810 949 G 949 (1010)
Q Consensus 949 ~ 949 (1010)
.
T Consensus 212 s 212 (433)
T PRK15477 212 G 212 (433)
T ss_pred h
Confidence 4
No 293
>PRK09973 putative outer membrane lipoprotein; Provisional
Probab=40.82 E-value=96 Score=29.35 Aligned_cols=47 Identities=15% Similarity=0.227 Sum_probs=39.0
Q ss_pred HHHhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 001810 283 NLANCETELRRLQSKKEELQKEVDRLNEVAEKAQMNALKAEEDVANI 329 (1010)
Q Consensus 283 ~l~~~~~~l~~~~~~~~~lq~~~~~l~~~~~~a~~~a~~a~~~~~~~ 329 (1010)
.+.....+...|+.+.+.++.+|+.++.-++.|+..|..|-+-.=|+
T Consensus 25 kvdqLss~V~~L~~kvdql~~dv~~a~aaa~aAk~EA~RAN~RiDN~ 71 (85)
T PRK09973 25 KVNQLASNVQTLNAKIARLEQDMKALRPQIYAAKSEANRANTRLDAQ 71 (85)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Confidence 34555678889999999999999999999999999888888766665
No 294
>PF02040 ArsB: Arsenical pump membrane protein; InterPro: IPR000802 Arsenic is a toxic metalloid whose trivalent and pentavalent ions inhibit a variety of biochemical processes. Operons that encode arsenic resistance have been found in multicopy plasmids from both Gram-positive and Gram-negative bacteria []. The resistance mechanism is encoded from a single operon, which houses an anion pump. The pump has two polypeptide components: a catalytic subunit (the ArsA protein), which functions as an oxyanion-stimulated ATPase; and an arsenite export component (the ArsB protein), which is associated with the inner membrane []. The ArsA and ArsB proteins are thought to form a membrane complex that functions as an anion-translocating ATPase. The ArsB protein is distinguished by its overall hydrophobic character, in keeping with its role as a membrane-associated channel. Sequence analysis reveals the presence of 13 putative transmembrane (TM) regions.; GO: 0015105 arsenite transmembrane transporter activity, 0016021 integral to membrane
Probab=40.76 E-value=7.3e+02 Score=29.96 Aligned_cols=37 Identities=19% Similarity=0.224 Sum_probs=27.4
Q ss_pred HHHHHHHHHHcCCCCChhhHHHHHHHHhHHHHHHHHH
Q 001810 726 TAVVLQVLQERGESTSRHGRATFSVLLFQDLAVVVLL 762 (1010)
Q Consensus 726 pAVvv~IL~elg~l~s~vGrLlL~~SllnDi~aIVLf 762 (1010)
+++++.+.+..|..+.+.--.+++.+.+-|..+.++-
T Consensus 117 TPivla~~~~~~~~~~~~lp~l~a~~~iAntASl~Lp 153 (423)
T PF02040_consen 117 TPIVLALARRLGLNPKPPLPFLFACAFIANTASLLLP 153 (423)
T ss_pred HHHHHHHHHHcCCCcccchHHHHHHHHHhhhhhcccc
Confidence 6777888888887655555667888888888877654
No 295
>PF01758 SBF: Sodium Bile acid symporter family; InterPro: IPR002657 This family of proteins are found both in prokaryotes and eukaryotes. They are related to the human bile acid:sodium symporters, which are transmembrane proteins functioning in the liver in the uptake of bile acids from portal blood plasma, a process mediated by the co-transport of Na+ []. In yeast, overexpression of the ACR3 gene confers an arsenite- but not an arsenate-resistance phenotype [].; GO: 0008508 bile acid:sodium symporter activity, 0006814 sodium ion transport, 0016020 membrane; PDB: 3ZUX_A 3ZUY_A.
Probab=40.42 E-value=3.2e+02 Score=28.56 Aligned_cols=65 Identities=18% Similarity=0.054 Sum_probs=27.8
Q ss_pred HhhcccChhhhhhh---hhhHHHHHHHHHHHHHHHHHHHH-HhhCCChHHHHH-HHHHHhhHHHHHHHHH
Q 001810 884 TVGMSIDPKLLLSN---FPVITGALGLLIGGKTILVALVG-RLFGVSVISAIR-TGLLLAPGGEFAFVAF 948 (1010)
Q Consensus 884 lIGl~Ldl~~L~~~---~~~iilillvvil~K~l~v~l~~-~~~gl~~real~-IGl~LaprG~vaLVLa 948 (1010)
.+|.+++++++... ++.++..++.-++.-++..|... .+++.+...+.. +=.+.+|.|..+.+..
T Consensus 10 ~~gl~~~~~~l~~~~~~p~~l~~~l~~~~~i~Plla~~l~~~~~~~~~~~~~Gl~l~~~~P~~~~s~~~t 79 (187)
T PF01758_consen 10 SMGLSLTFEDLRRVLRRPKLLLIGLLAQFLIMPLLAFGLAWLLLPLSPALALGLLLVAACPGGPASNVFT 79 (187)
T ss_dssp HHHHC--GGGGHHHHHSHHHHHHHHHHHHHHHHHHHHHHH-HHTT--HHHHHHHHHHHHS-B-THHHHHH
T ss_pred HhhhcccHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCcHHHHHHHH
Confidence 34666666666542 33334444455555666666666 555544432211 1122455555554443
No 296
>PF11839 DUF3359: Protein of unknown function (DUF3359); InterPro: IPR021793 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 80 amino acids in length.
Probab=40.42 E-value=1.4e+02 Score=28.97 Aligned_cols=42 Identities=26% Similarity=0.189 Sum_probs=21.8
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 001810 294 LQSKKEELQKEVDRLNEVAEKAQMNALKAEEDVANIMLLAEQ 335 (1010)
Q Consensus 294 ~~~~~~~lq~~~~~l~~~~~~a~~~a~~a~~~~~~~m~~ae~ 335 (1010)
++...+++|..+...+..|..|+..|..|..-.-..+-.||+
T Consensus 33 ~~~~a~~a~~~a~~a~~~A~~A~~~AdeA~~kA~~A~aaA~~ 74 (96)
T PF11839_consen 33 AQSTAEQAQATAASAQSAAASAQQRADEAASKADAALAAAEA 74 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555555555554444444444443
No 297
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=40.39 E-value=3e+02 Score=33.13 Aligned_cols=67 Identities=28% Similarity=0.306 Sum_probs=37.4
Q ss_pred CCCcHHHHHHHHHHHHHHHHHhhhhhHHHH---HHHHHHHHHHhchhHHHHHHHhhhHhHHHHHHHHHHHHHHHHHHHHH
Q 001810 147 PPTTDELRELLMNAMKELEVAQLNSTMFEE---KAQRISEAAIALKDEAANAWNNVNVTLDMVHEIVNEECIAKEAVHKA 223 (1010)
Q Consensus 147 ~~~~~~l~~~l~~a~~~le~a~~~~~~~e~---~~~~~~~~ai~~~d~~~~~~~~~~~~~~~~~~~~~~e~~a~~~~~~~ 223 (1010)
..++++|.+.|+||+.|.+---.-.--+|. +|++.+|. .+=+..|..-||-.| -
T Consensus 258 Eqsl~dlQk~Lekar~e~rnvavek~~lerkl~ea~rl~el----------------------reg~e~e~~rkelE~-l 314 (575)
T KOG4403|consen 258 EQSLEDLQKRLEKAREEQRNVAVEKLDLERKLDEAPRLSEL----------------------REGVENETSRKELEQ-L 314 (575)
T ss_pred HHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHhhhhhhhhh----------------------hcchhHHHHHHHHHH-H
Confidence 356888888888888874432222222222 34444442 222223333356556 7
Q ss_pred HHHHHHHHHHHHH
Q 001810 224 TMALSLAEARLQV 236 (1010)
Q Consensus 224 ~~~~~~a~~~~~~ 236 (1010)
+|+|+-||-+|..
T Consensus 315 R~~L~kAEkele~ 327 (575)
T KOG4403|consen 315 RVALEKAEKELEA 327 (575)
T ss_pred HHHHHHHHHHHHh
Confidence 8888888887753
No 298
>PRK15475 oxaloacetate decarboxylase subunit beta; Provisional
Probab=40.02 E-value=54 Score=38.55 Aligned_cols=75 Identities=23% Similarity=0.108 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHhhcccChhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHh-----hCCChHHHHHHHHHHhhHHHHHHHHH
Q 001810 874 RGLLLGLFFMTVGMSIDPKLLLSNFPVITGALGLLIGGKTILVALVGRL-----FGVSVISAIRTGLLLAPGGEFAFVAF 948 (1010)
Q Consensus 874 ~~~f~PLFFVlIGl~Ldl~~L~~~~~~iilillvvil~K~l~v~l~~~~-----~gl~~real~IGl~LaprG~vaLVLa 948 (1010)
.+++=|+.|+-+|...|+.-+..++.. +++-...-++-|+....+..+ .|++.+|+..+|+.=+.=|..++.+.
T Consensus 133 ~gi~P~LIF~GIGAMtDFgpLlanP~~-~llGaAAQ~GIF~t~~~A~~l~~~g~~GF~~~eAAsIgIIGGADGPTsIfvs 211 (433)
T PRK15475 133 SGVAPLVIFMGVGAMTDFGPLLANPRT-LLLGAAAQFGIFATVLGALTLNYFGLISFTLPQAAAIGIIGGADGPTAIYLS 211 (433)
T ss_pred cchHHHHHHHhccHHhcchHHhhCHHH-HHHHHHHHhhHHHHHHHHHHHhhcccCCCChhhchheeeeccCCCchHHHhH
Confidence 357788899999999999888766433 233333334444433333333 37899999988887667777776665
Q ss_pred H
Q 001810 949 G 949 (1010)
Q Consensus 949 ~ 949 (1010)
.
T Consensus 212 s 212 (433)
T PRK15475 212 G 212 (433)
T ss_pred h
Confidence 4
No 299
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=39.95 E-value=60 Score=27.03 Aligned_cols=35 Identities=29% Similarity=0.407 Sum_probs=25.2
Q ss_pred HHHHHHHhhH---HHHHHHhhhHHHHHHHHHHHHHHHH
Q 001810 279 ECQANLANCE---TELRRLQSKKEELQKEVDRLNEVAE 313 (1010)
Q Consensus 279 ~~~~~l~~~~---~~l~~~~~~~~~lq~~~~~l~~~~~ 313 (1010)
||.+.-++|+ ++-++|+..+++|+.||.+|+++..
T Consensus 6 Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~kl~ 43 (45)
T PF02183_consen 6 DYDALKASYDSLKAEYDSLKKENEKLRAEVQELKEKLQ 43 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4444444443 4778899999999999999987653
No 300
>PRK14855 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=39.92 E-value=2.1e+02 Score=34.44 Aligned_cols=21 Identities=38% Similarity=0.736 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHhhcccChhhh
Q 001810 874 RGLLLGLFFMTVGMSIDPKLL 894 (1010)
Q Consensus 874 ~~~f~PLFFVlIGl~Ldl~~L 894 (1010)
.+.++.+||..+|+.+.-+.+
T Consensus 68 NDgLMaiFFf~VGLEIKrE~l 88 (423)
T PRK14855 68 NDGLMAVFFLLVGLEIKRELL 88 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 588999999999999975544
No 301
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=39.69 E-value=6.5e+02 Score=29.09 Aligned_cols=22 Identities=23% Similarity=0.303 Sum_probs=13.1
Q ss_pred HhhhcccHHHHHHHHHHhhcCC
Q 001810 343 ATQRVNDAEIALQRAEKSLSNS 364 (1010)
Q Consensus 343 a~~~~~~~e~~l~~~~~~~~~~ 364 (1010)
+.+...+++..+..++..+...
T Consensus 251 ~~~~l~~~~~~l~~~~~~l~~~ 272 (423)
T TIGR01843 251 AQARLAELRERLNKARDRLQRL 272 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHhhc
Confidence 3444555666667777666553
No 302
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=39.44 E-value=8.5e+02 Score=30.34 Aligned_cols=34 Identities=29% Similarity=0.348 Sum_probs=17.7
Q ss_pred cHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Q 001810 150 TDELRELLMNAMKELEVAQLNSTMFEEKAQRISEAA 185 (1010)
Q Consensus 150 ~~~l~~~l~~a~~~le~a~~~~~~~e~~~~~~~~~a 185 (1010)
++.|++-+..+...|+.-++ ...+++.++|.+.-
T Consensus 258 i~~l~~~i~~~~~~l~~l~l--~~~~~~~~~i~~~I 291 (569)
T PRK04778 258 IQDLKEQIDENLALLEELDL--DEAEEKNEEIQERI 291 (569)
T ss_pred HHHHHHHHHHHHHHHHhcCh--HHHHHHHHHHHHHH
Confidence 55666666665555544333 33455555555443
No 303
>PRK09824 PTS system beta-glucoside-specific transporter subunits IIABC; Provisional
Probab=38.68 E-value=9.4e+02 Score=30.62 Aligned_cols=29 Identities=24% Similarity=0.297 Sum_probs=21.8
Q ss_pred HHHHHHHHHHhcCCChHHHHHHhhhcccC
Q 001810 696 AVVVGLVAHFVSGLPGPASIVIGNGLALS 724 (1010)
Q Consensus 696 ~~~Vg~la~~l~Gls~~~ALLLGaILSaT 724 (1010)
++.+++-+..-++-++..+..+|+++..+
T Consensus 158 Pi~ia~saAkkf~~np~lg~~ig~~L~~P 186 (627)
T PRK09824 158 PIILGYTAGKKFGGNPFTAMVIGGALVHP 186 (627)
T ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHCh
Confidence 45677777777888888888888777644
No 304
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=38.49 E-value=9.7e+02 Score=31.27 Aligned_cols=123 Identities=23% Similarity=0.268 Sum_probs=80.7
Q ss_pred cHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhchhHHHHHHHhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001810 150 TDELRELLMNAMKELEVAQLNSTMFEEKAQRISEAAIALKDEAANAWNNVNVTLDMVHEIVNEECIAKEAVHKATMALSL 229 (1010)
Q Consensus 150 ~~~l~~~l~~a~~~le~a~~~~~~~e~~~~~~~~~ai~~~d~~~~~~~~~~~~~~~~~~~~~~e~~a~~~~~~~~~~~~~ 229 (1010)
+..|-.+|...++||-.+| ||.=|+|-+++..---|-.+.+...+.-|..... ++..- +..++.+.-+|
T Consensus 47 ~~hld~aLkec~~qlr~~r------ee~eq~i~~~~~~~s~e~e~~~~~le~~l~e~~~----~l~~~-~~e~~~l~~~l 115 (769)
T PF05911_consen 47 VSHLDGALKECMRQLRQVR------EEQEQKIHEAVAKKSKEWEKIKSELEAKLAELSK----RLAES-AAENSALSKAL 115 (769)
T ss_pred hhhhhHHHHHHHHHHHHhh------HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH----HHHHH-HhhhHHHHHHH
Confidence 4556778888888887776 8999999998887777777777666655443322 22211 12222222222
Q ss_pred HHHHHHHHHHHhhhhccCCCCCCCCcccccCCCCcchhhHHHHHhhhHHHHHHHHHhhHHHHHHHhhhHHHHHHHHHHHH
Q 001810 230 AEARLQVAIESLQDVKQEDDYPEGSTEDDAKSDGKEEDGLLLAAENDIKECQANLANCETELRRLQSKKEELQKEVDRLN 309 (1010)
Q Consensus 230 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~l~~~~~~l~~~~~~~~~lq~~~~~l~ 309 (1010)
.+|-.+..| =.+....|..||++.++.|..||.|-..|+-..--||||+.-.+
T Consensus 116 -~~~~~~i~~--------------------------l~~~~~~~e~~~~~l~~~l~~~eken~~Lkye~~~~~keleir~ 168 (769)
T PF05911_consen 116 -QEKEKLIAE--------------------------LSEEKSQAEAEIEDLMARLESTEKENSSLKYELHVLSKELEIRN 168 (769)
T ss_pred -HHHHHHHHH--------------------------HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111111111 12444567788999999999999999999999999999998877
Q ss_pred H
Q 001810 310 E 310 (1010)
Q Consensus 310 ~ 310 (1010)
+
T Consensus 169 ~ 169 (769)
T PF05911_consen 169 E 169 (769)
T ss_pred H
Confidence 5
No 305
>COG4858 Uncharacterized membrane-bound protein conserved in bacteria [Function unknown]
Probab=38.38 E-value=3.2e+02 Score=29.57 Aligned_cols=43 Identities=16% Similarity=0.002 Sum_probs=25.5
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHhhc
Q 001810 597 NEEEASLFDVLWLLLASVIFVPIFQKIPGGSPVLGYLAAGILIG 640 (1010)
Q Consensus 597 ~~~~~~Ll~illLLl~A~ilg~Ll~Rl~gLP~vVG~ILaGILLG 640 (1010)
|..++.++.+.++-+++.+..++.+.- ..-.++..++.|++-|
T Consensus 96 m~lDssLl~lg~~aLlsgitaff~~nA-~~~GlItlll~a~vgG 138 (226)
T COG4858 96 MWLDSSLLFLGAMALLSGITAFFQKNA-QVYGLITLLLTAVVGG 138 (226)
T ss_pred EEecccHHHHHHHHHHHHHHHHHhcCC-cchhHHHHHHHHHhhh
Confidence 444556666777777777777776654 2334555555555544
No 306
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=38.34 E-value=4.3e+02 Score=32.13 Aligned_cols=41 Identities=24% Similarity=0.393 Sum_probs=35.2
Q ss_pred hhhHHHHHHHHHhhHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 001810 274 ENDIKECQANLANCETELRRLQSKKEELQKEVDRLNEVAEK 314 (1010)
Q Consensus 274 ~~~~~~~~~~l~~~~~~l~~~~~~~~~lq~~~~~l~~~~~~ 314 (1010)
..-|+|.-.|.-.-+.+.-++++.--|||||.+++.|...+
T Consensus 388 tqrikEi~gniRKq~~DI~Kil~etreLqkq~ns~se~L~R 428 (521)
T KOG1937|consen 388 TQRIKEIDGNIRKQEQDIVKILEETRELQKQENSESEALNR 428 (521)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45688899999999999999999999999999988876543
No 307
>PRK11578 macrolide transporter subunit MacA; Provisional
Probab=38.11 E-value=1.9e+02 Score=33.52 Aligned_cols=17 Identities=29% Similarity=0.337 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q 001810 221 HKATMALSLAEARLQVA 237 (1010)
Q Consensus 221 ~~~~~~~~~a~~~~~~~ 237 (1010)
+.+...+.+|+.+++..
T Consensus 116 ~~a~~~l~~a~~~~~r~ 132 (370)
T PRK11578 116 QQAEAELKLARVTLSRQ 132 (370)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444455555555443
No 308
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=37.88 E-value=2.6e+02 Score=25.52 Aligned_cols=63 Identities=24% Similarity=0.274 Sum_probs=47.8
Q ss_pred HHHHHHHHHHhhhhccCCCCCCCCcccccCCCCcchhhHHHHHhhhHHHHHHHHHhhHHHHHHHhhhHHHHHHHHHHHHH
Q 001810 231 EARLQVAIESLQDVKQEDDYPEGSTEDDAKSDGKEEDGLLLAAENDIKECQANLANCETELRRLQSKKEELQKEVDRLNE 310 (1010)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~l~~~~~~l~~~~~~~~~lq~~~~~l~~ 310 (1010)
|.+|.-|.|+|+.. =+.-+..=+....+-|-.+.....+...|..+..+|...|++|++
T Consensus 5 E~qLl~ale~Lq~~---------------------y~~q~~~Wq~sy~~Lq~~~~~t~~~~a~L~~qv~~Ls~qv~~Ls~ 63 (70)
T PF04899_consen 5 EKQLLSALEELQQS---------------------YEKQQQEWQSSYADLQHMFEQTSQENAALSEQVNNLSQQVQRLSE 63 (70)
T ss_pred HHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788888888872 112233335567777788888888999999999999999999998
Q ss_pred HHHH
Q 001810 311 VAEK 314 (1010)
Q Consensus 311 ~~~~ 314 (1010)
.-++
T Consensus 64 ql~r 67 (70)
T PF04899_consen 64 QLER 67 (70)
T ss_pred HHHh
Confidence 7654
No 309
>PRK15445 arsenical pump membrane protein; Provisional
Probab=37.88 E-value=7.5e+02 Score=29.24 Aligned_cols=17 Identities=35% Similarity=0.382 Sum_probs=10.7
Q ss_pred HHHHHHHHHHcCCCCCh
Q 001810 726 TAVVLQVLQERGESTSR 742 (1010)
Q Consensus 726 pAVvv~IL~elg~l~s~ 742 (1010)
.+++..+.++.|..+++
T Consensus 118 ~Pi~~~i~~~~g~~~~~ 134 (427)
T PRK15445 118 TPIVLAMLLALGFSKKA 134 (427)
T ss_pred HHHHHHHHHHcCCCccc
Confidence 45666777777765543
No 310
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=37.82 E-value=3.6e+02 Score=30.45 Aligned_cols=20 Identities=20% Similarity=0.159 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHhhccccc
Q 001810 969 ISIYLQLIMIFFFFNCGLLI 988 (1010)
Q Consensus 969 lS~IItPiL~~l~~~~~r~~ 988 (1010)
+.+=+.|++.+++.++..|+
T Consensus 273 i~iel~Pv~~Kl~~~~~~YD 292 (301)
T PF14362_consen 273 IAIELLPVLFKLLSGKGPYD 292 (301)
T ss_pred HHHHHHHHHHHHhcCCChHH
Confidence 34446899999988777654
No 311
>PRK15374 pathogenicity island 1 effector protein SipB; Provisional
Probab=37.71 E-value=4.1e+02 Score=33.09 Aligned_cols=32 Identities=19% Similarity=0.297 Sum_probs=21.3
Q ss_pred HHHHHHhchhHHHHHHHhhhHhHHHHHHHHHH
Q 001810 181 ISEAAIALKDEAANAWNNVNVTLDMVHEIVNE 212 (1010)
Q Consensus 181 ~~~~ai~~~d~~~~~~~~~~~~~~~~~~~~~~ 212 (1010)
.-|.+|+=.|.|+++-++..++|+.+|--+..
T Consensus 142 ~l~q~~~~~~~Aq~~l~~aq~~l~~lq~~a~~ 173 (593)
T PRK15374 142 LYEASIKKTDTAKSVYDAAEKKLTQAQNKLQS 173 (593)
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhh
Confidence 34455555777777777788888887655543
No 312
>PRK00106 hypothetical protein; Provisional
Probab=37.44 E-value=9.2e+02 Score=30.14 Aligned_cols=43 Identities=16% Similarity=0.249 Sum_probs=21.2
Q ss_pred hhHHHHHhhhHHHHHHHHHhhHHHHHHHhhhHHHHHHHHHHHH
Q 001810 267 DGLLLAAENDIKECQANLANCETELRRLQSKKEELQKEVDRLN 309 (1010)
Q Consensus 267 ~~~~~~a~~~~~~~~~~l~~~~~~l~~~~~~~~~lq~~~~~l~ 309 (1010)
++.|..-.+++.+-+..|..-+.+|+..+...++++++++++.
T Consensus 110 EE~LekRee~LekrE~eLe~kekeLe~reeeLee~~~~~~~~~ 152 (535)
T PRK00106 110 ATSLDRKDENLSSKEKTLESKEQSLTDKSKHIDEREEQVEKLE 152 (535)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444455555555555555555555555554443
No 313
>KOG1760 consensus Molecular chaperone Prefoldin, subunit 4 [Posttranslational modification, protein turnover, chaperones]
Probab=37.32 E-value=1.5e+02 Score=29.97 Aligned_cols=32 Identities=41% Similarity=0.594 Sum_probs=25.0
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHH--HHHHHHhhh
Q 001810 291 LRRLQSKKEELQKEVDRLNEVAE--KAQMNALKA 322 (1010)
Q Consensus 291 l~~~~~~~~~lq~~~~~l~~~~~--~a~~~a~~a 322 (1010)
...|...|+.|+|+++.|....+ +++|+++|+
T Consensus 83 ~~~LEe~ke~l~k~i~~les~~e~I~~~m~~LK~ 116 (131)
T KOG1760|consen 83 QDQLEEKKETLEKEIEELESELESISARMDELKK 116 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566789999999999988776 467888875
No 314
>PF03788 LrgA: LrgA family; InterPro: IPR005538 This family is represented by: YohJ, an inner membrane protein with four predicted transmembrane domains; the C terminus is located in the periplasm []. LrgA, a protein that has been hypothesised to export murein hydrolases []. In Staphylococcus aureus, lrg and cid operons encode homologous proteins that regulate extracellular murein hydrolase activity and penicillin tolerance [, ]. Since the proteins encoded by cidA and lrgA are so similar to the bacteriophage-encoded holin family of proteins, they are considered analogous []. The proteins in this entry are functionally uncharacterised.; GO: 0016021 integral to membrane
Probab=37.02 E-value=2.3e+02 Score=27.08 Aligned_cols=83 Identities=13% Similarity=0.171 Sum_probs=51.2
Q ss_pred HHHHHHhcCCC--c-hHHHHHHHHHhhcccccccccCch----hHHHHHHHHHHHHHHHHhhcCChhHHHhchhhHHHHH
Q 001810 616 FVPIFQKIPGG--S-PVLGYLAAGILIGPYGLSIIRHVH----GTKAIAEFGVVFLLFNIGLELSVERLSSMKKYVFGLG 688 (1010)
Q Consensus 616 lg~Ll~Rl~gL--P-~vVG~ILaGILLGP~gLglI~~~~----~le~LaeLGLi~LLF~aGLEidl~~Lrr~~k~il~LA 688 (1010)
+|....++.++ | +++|+++.=+.+. .+.++... .--.+.++++.|+=-.+|.=...+.+++++..++...
T Consensus 4 ~G~~i~~~l~lpiPgsviGmllL~~~L~---~~~vk~~~i~~~a~~Ll~~m~lfFvPa~VGi~~~~~~l~~~~~~i~~~i 80 (96)
T PF03788_consen 4 LGEWISRLLPLPIPGSVIGMLLLFLLLM---FKIVKLEWIEPAANFLLKNMALFFVPAGVGIMEYFDLLAQEGLPILVVI 80 (96)
T ss_pred HHHHHHHHcCCCCChHHHHHHHHHHHHH---cCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445554344 3 4567766655555 33443211 1135666777777777888888888888888887777
Q ss_pred HHHHHHHHHHHHH
Q 001810 689 SAQVLVTAVVVGL 701 (1010)
Q Consensus 689 lv~vllt~~~Vg~ 701 (1010)
+++.+++..+.|+
T Consensus 81 ~vsT~l~~~~tg~ 93 (96)
T PF03788_consen 81 VVSTLLVLAVTGW 93 (96)
T ss_pred HHHHHHHHHHHHh
Confidence 7777666555444
No 315
>PRK04125 murein hydrolase regulator LrgA; Provisional
Probab=36.19 E-value=3.7e+02 Score=27.71 Aligned_cols=31 Identities=19% Similarity=0.386 Sum_probs=17.9
Q ss_pred HHHHHHHhhccc--ChhhhhhhhhhHHHHHHHH
Q 001810 878 LGLFFMTVGMSI--DPKLLLSNFPVITGALGLL 908 (1010)
Q Consensus 878 ~PLFFVlIGl~L--dl~~L~~~~~~iilillvv 908 (1010)
+|+||+=.|..+ .++.+..+|+.+++.+++.
T Consensus 69 m~LfFVPagVGim~~~~ll~~~~~~Il~~ivvS 101 (141)
T PRK04125 69 IGFLFVPSGISVINSLGVMSQYPVQIIGVIIVA 101 (141)
T ss_pred HHHHHhhhHhHHHHhHHHHHHHHHHHHHHHHHH
Confidence 788888766654 4556555555444433333
No 316
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=36.07 E-value=6.7e+02 Score=32.60 Aligned_cols=40 Identities=25% Similarity=0.261 Sum_probs=18.4
Q ss_pred HHHhhhHHHHHHHHHhhHHHHHHHhhhHHHHHHHHHHHHH
Q 001810 271 LAAENDIKECQANLANCETELRRLQSKKEELQKEVDRLNE 310 (1010)
Q Consensus 271 ~~a~~~~~~~~~~l~~~~~~l~~~~~~~~~lq~~~~~l~~ 310 (1010)
..-.++.++.+....+++.++++++..+.+|+++..+|.+
T Consensus 518 ~~L~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~~ 557 (771)
T TIGR01069 518 EKLSALEKELEQKNEHLEKLLKEQEKLKKELEQEMEELKE 557 (771)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444444444444444444444444
No 317
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=36.05 E-value=9.4e+02 Score=29.84 Aligned_cols=22 Identities=14% Similarity=0.143 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHhhhhhHHH
Q 001810 154 RELLMNAMKELEVAQLNSTMFE 175 (1010)
Q Consensus 154 ~~~l~~a~~~le~a~~~~~~~e 175 (1010)
.+-+++++++|+..+-+..-.+
T Consensus 167 ~~~~~~~~~~L~~l~~~~~~~~ 188 (563)
T TIGR00634 167 YQAWLKARQQLKDRQQKEQELA 188 (563)
T ss_pred HHHHHHHHHHHHHHHhhhHHHH
Confidence 3444455555555444443333
No 318
>COG1883 OadB Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase, beta subunit [Energy production and conversion]
Probab=35.93 E-value=6.8e+02 Score=29.01 Aligned_cols=95 Identities=13% Similarity=0.110 Sum_probs=57.4
Q ss_pred CchHHHHHHHHHhhccc-ccccc----c-CchhHHHHHHHHH------HHHHHHHhhcCChhHHHhchhhHHHHHHHHHH
Q 001810 626 GSPVLGYLAAGILIGPY-GLSII----R-HVHGTKAIAEFGV------VFLLFNIGLELSVERLSSMKKYVFGLGSAQVL 693 (1010)
Q Consensus 626 LP~vVG~ILaGILLGP~-gLglI----~-~~~~le~LaeLGL------i~LLF~aGLEidl~~Lrr~~k~il~LAlv~vl 693 (1010)
-|..+..|-+|.++.+. +-|+. . ++..+..+...|+ .++++-.|--+|+.-+..|.+..+.=+..++-
T Consensus 40 EPlLL~PIgfG~iLvNiP~ag~~~~~~~~~~G~~~~~~~~gi~~~i~PllIFmGvGAmTDFgpllanPktllLGaAAQ~G 119 (375)
T COG1883 40 EPLLLLPIGFGGILVNIPGAGLADTALEGNPGVLALFYKVGIGSGIFPLLIFMGVGAMTDFGPLLANPKTLLLGAAAQFG 119 (375)
T ss_pred CceEeeecccceeeecCCcchhhcccccCCCcHHHHHHHHHhccCcccHHHHhccchhcccchhhcCcHHHHhhhHHHhc
Confidence 36566666677777632 11211 1 2344555555553 23555678899999999999887766665552
Q ss_pred HHHHHHHHHHHHhcCCChHHHHHHhhhccc
Q 001810 694 VTAVVVGLVAHFVSGLPGPASIVIGNGLAL 723 (1010)
Q Consensus 694 lt~~~Vg~la~~l~Gls~~~ALLLGaILSa 723 (1010)
+ .+.++.....|+.+..|..+|++=.+
T Consensus 120 I---F~t~~~A~~lgf~~~eAasIgIIGGA 146 (375)
T COG1883 120 I---FATVFGALALGFTPKEAASIGIIGGA 146 (375)
T ss_pred h---HHHHHHHHHhCCCHhhhhheeeeccC
Confidence 2 22333445568888888888766543
No 319
>PF03207 OspD: Borrelia outer surface protein D (OspD); InterPro: IPR004894 This is a family of outer surface proteins from Borrelia. The function of these proteins is unknown.
Probab=35.92 E-value=5.5e+02 Score=27.16 Aligned_cols=58 Identities=21% Similarity=0.255 Sum_probs=37.2
Q ss_pred CcHHHHHHHHHHHHHHHHHhhhhhHH--HHHHHHHHHHHHhchhHHHHHHHhhhHhHHHH
Q 001810 149 TTDELRELLMNAMKELEVAQLNSTMF--EEKAQRISEAAIALKDEAANAWNNVNVTLDMV 206 (1010)
Q Consensus 149 ~~~~l~~~l~~a~~~le~a~~~~~~~--e~~~~~~~~~ai~~~d~~~~~~~~~~~~~~~~ 206 (1010)
-+.||..+|.....-|.+|.-...-+ -.+|.++-|..|+.-.--.+|-++|.++-...
T Consensus 56 il~elnqll~qttnslkeakn~td~ln~sneankvveavi~avnlissaadqvk~a~knm 115 (254)
T PF03207_consen 56 ILSELNQLLKQTTNSLKEAKNTTDNLNASNEANKVVEAVINAVNLISSAADQVKSAQKNM 115 (254)
T ss_pred HHHHHHHHHHHhhhHHHHhhccccccccchhhhHHHHHHHHHHHHHHHHHHHHhhhhhhH
Confidence 38899999999998888886332222 24677888877766555555555555443333
No 320
>PTZ00121 MAEBL; Provisional
Probab=35.90 E-value=1.4e+03 Score=32.01 Aligned_cols=174 Identities=21% Similarity=0.129 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhchhHHHHHHHhhhHhHHHHHHHHHHHHHHH--HHHHHHHHHHHHHH
Q 001810 154 RELLMNAMKELEVAQLNSTMFEEKAQRISEAAIALKDEAANAWNNVNVTLDMVHEIVNEECIAK--EAVHKATMALSLAE 231 (1010)
Q Consensus 154 ~~~l~~a~~~le~a~~~~~~~e~~~~~~~~~ai~~~d~~~~~~~~~~~~~~~~~~~~~~e~~a~--~~~~~~~~~~~~a~ 231 (1010)
.+-..+..+++|.+|---++=.++=.++.|.|=.+.......--....-.....++-..|...| |..++|-..--+-|
T Consensus 1174 eArr~EEaRraEE~Rr~EElRraEEaRkaEEaRRlEE~RraEEARraEEErR~EE~RraEEaRK~aEEAkraEEeR~~EE 1253 (2084)
T PTZ00121 1174 DAKKAEAARKAEEVRKAEELRKAEDARKAEAARKAEEERKAEEARKAEDAKKAEAVKKAEEAKKDAEEAKKAEEERNNEE 1253 (2084)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHhhhhccCCCCCCCCcccccCCCCcchhhHHHHHhhhHHHHHHHHHhhHHHHHHHhhhHHHHHHHHHHHH--
Q 001810 232 ARLQVAIESLQDVKQEDDYPEGSTEDDAKSDGKEEDGLLLAAENDIKECQANLANCETELRRLQSKKEELQKEVDRLN-- 309 (1010)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~l~~~~~~l~~~~~~~~~lq~~~~~l~-- 309 (1010)
.|.+-...-.+.+ .-....+.|-..=-..+...|++-..--.+++|.+|++++..
T Consensus 1254 ~Rk~Eear~a~~A-----------------------~r~aa~k~Ee~RrAee~~k~Ee~r~a~~~kk~ee~kkaee~~kk 1310 (2084)
T PTZ00121 1254 IRKFEEARMAHFA-----------------------RRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKK 1310 (2084)
T ss_pred HHHHHHHHHHHHH-----------------------HHhHhhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Q ss_pred -HHHHHHHHHHhhhHH----------------HHHHHHHHHHHHHHHHHHHhhhcccH
Q 001810 310 -EVAEKAQMNALKAEE----------------DVANIMLLAEQAVAFEIEATQRVNDA 350 (1010)
Q Consensus 310 -~~~~~a~~~a~~a~~----------------~~~~~m~~ae~av~~e~ea~~~~~~~ 350 (1010)
|-|++|..+-.+||+ -.+.+-..-+.|-+.|+||+..-..|
T Consensus 1311 ~eea~kAee~~kkae~~~kka~~~~k~~e~~kk~~e~~~~~~~~~~~~~~~~~~~~~~ 1368 (2084)
T PTZ00121 1311 AEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEA 1368 (2084)
T ss_pred HHHHHHHHHHHHhHHHHHhhhHHHHhhHHHHHhHHHhhhhhhhhhhhhhhhhhhhhhh
No 321
>PF05684 DUF819: Protein of unknown function (DUF819); InterPro: IPR008537 This family contains proteins of unknown function from archaeal, bacterial and plant species.
Probab=35.36 E-value=5.4e+02 Score=30.50 Aligned_cols=53 Identities=21% Similarity=0.036 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHhhcccChhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhCC
Q 001810 873 YRGLLLGLFFMTVGMSIDPKLLLSNFPVITGALGLLIGGKTILVALVGRLFGV 925 (1010)
Q Consensus 873 i~~~f~PLFFVlIGl~Ldl~~L~~~~~~iilillvvil~K~l~v~l~~~~~gl 925 (1010)
++..+.|+--.++=++.|+..+...-+..++.+++..++-.++..+..+.++.
T Consensus 56 v~~~~vPlai~LlLl~~Dlr~i~~~g~~~l~~F~~~~~g~viG~~va~~l~~~ 108 (378)
T PF05684_consen 56 VWTYLVPLAIPLLLLSADLRRILRLGGRLLLAFLIGAVGTVIGAVVAFLLFGG 108 (378)
T ss_pred HHHHHHHHHHHHHHHHccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 35566666555555677888776644444455555555555666555555543
No 322
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=35.33 E-value=1.4e+02 Score=29.92 Aligned_cols=47 Identities=28% Similarity=0.485 Sum_probs=32.2
Q ss_pred HHHHHhhhHHHHHHHHHhhHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q 001810 269 LLLAAENDIKECQANLANCETELRRLQSKKEELQKEVDRLNEVAEKA 315 (1010)
Q Consensus 269 ~~~~a~~~~~~~~~~l~~~~~~l~~~~~~~~~lq~~~~~l~~~~~~a 315 (1010)
.+..=+..|+.++.-++....|+.+++..++++..|+-+|....+..
T Consensus 17 ~ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~ 63 (120)
T PF12325_consen 17 LVERLQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEEL 63 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444556777777777777777777777777777777776665544
No 323
>PRK09173 F0F1 ATP synthase subunit B; Validated
Probab=35.15 E-value=5.1e+02 Score=26.49 Aligned_cols=89 Identities=27% Similarity=0.221 Sum_probs=48.4
Q ss_pred HHhhhHHHHHHHHHhhHHHHHHHhhhHHHHHHHHHHHHHHHHH-HHHHHhhhHHHHHHHHHHHHHHHHHHHHHhh---hc
Q 001810 272 AAENDIKECQANLANCETELRRLQSKKEELQKEVDRLNEVAEK-AQMNALKAEEDVANIMLLAEQAVAFEIEATQ---RV 347 (1010)
Q Consensus 272 ~a~~~~~~~~~~l~~~~~~l~~~~~~~~~lq~~~~~l~~~~~~-a~~~a~~a~~~~~~~m~~ae~av~~e~ea~~---~~ 347 (1010)
.|.+...+.+..+.+.+.+|+..+.+- |+-++.-+.-+++ .+..-.+|++++..++..|++-+..|-+.+. +-
T Consensus 44 ~Ae~~~~eA~~~~~~~e~~L~~A~~ea---~~ii~~A~~~a~~~~~~a~~~a~~~~~~~~~~a~~~I~~ek~~a~~el~~ 120 (159)
T PRK09173 44 EARRLREEAQQLLAEYQRKRKEAEKEA---ADIVAAAEREAEALTAEAKRKTEEYVARRNKLAEQKIAQAETDAINAVRS 120 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555665555443322 2222222222221 2223446777888888888887777655432 22
Q ss_pred ccHHHHHHHHHHhhcC
Q 001810 348 NDAEIALQRAEKSLSN 363 (1010)
Q Consensus 348 ~~~e~~l~~~~~~~~~ 363 (1010)
.=++.|++.|+|-+..
T Consensus 121 ~~~~lA~~~A~kil~~ 136 (159)
T PRK09173 121 SAVDLAIAAAEKLLAE 136 (159)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 2356788888886654
No 324
>PF05817 Ribophorin_II: Oligosaccharyltransferase subunit Ribophorin II; InterPro: IPR008814 This family consists of several eukaryotic Ribophorin II (RPN2) proteins. The mammalian oligosaccharyltransferase (OST) is a protein complex that effects the cotranslational N-glycosylation of newly synthesised polypeptides, and is composed of at least four rough ER-specific membrane proteins: ribophorins I and II (RI and RII), OST48, and Dadl. The mechanism(s) by which the subunits of this complex are retained in the ER are not well understood [].; GO: 0004579 dolichyl-diphosphooligosaccharide-protein glycotransferase activity, 0018279 protein N-linked glycosylation via asparagine, 0005789 endoplasmic reticulum membrane, 0008250 oligosaccharyltransferase complex
Probab=34.56 E-value=95 Score=39.20 Aligned_cols=88 Identities=16% Similarity=0.214 Sum_probs=48.0
Q ss_pred CCchHHHHHHHHHhhcccccccccCchhHHHHHHHHHHHHHHHHhhcCChhHHHhchhh-HHHHHHHHHHHHHHHHHHHH
Q 001810 625 GGSPVLGYLAAGILIGPYGLSIIRHVHGTKAIAEFGVVFLLFNIGLELSVERLSSMKKY-VFGLGSAQVLVTAVVVGLVA 703 (1010)
Q Consensus 625 gLP~vVG~ILaGILLGP~gLglI~~~~~le~LaeLGLi~LLF~aGLEidl~~Lrr~~k~-il~LAlv~vllt~~~Vg~la 703 (1010)
+-|.++.+++.|+++.|. ++++...+..|. +++.+...... ++.++++ .+.|++.
T Consensus 544 ~pp~~vS~~F~~~vlapl----------------~~Ll~~W~~lG~--Nl~~l~~~~~~~~F~~~l~------ai~glf~ 599 (636)
T PF05817_consen 544 RPPKIVSLVFTGLVLAPL----------------LVLLILWLKLGA--NLSNLPFSPSAILFHGGLG------AIEGLFF 599 (636)
T ss_pred CCchHHHHHHHHHHHHHH----------------HHHHHHHHHcCc--chhhCCCCchHHHHHHHHH------HHHHHHH
Confidence 446678888888888874 334444444554 44444322221 1112211 2234555
Q ss_pred HHhcCCChHHHHHHhhhcccCcHHHHHHHHHHc
Q 001810 704 HFVSGLPGPASIVIGNGLALSSTAVVLQVLQER 736 (1010)
Q Consensus 704 ~~l~Gls~~~ALLLGaILSaTSpAVvv~IL~el 736 (1010)
.||.+++....+-..+++++.....--+.|++.
T Consensus 600 ~Yw~~l~lFqTL~~~~~lg~~t~~~G~r~L~~~ 632 (636)
T PF05817_consen 600 LYWLGLNLFQTLPYLAVLGAVTFLSGNRALREL 632 (636)
T ss_pred HHHHhccHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 667788876666666666655555555555543
No 325
>PRK14854 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=34.41 E-value=2.3e+02 Score=33.73 Aligned_cols=21 Identities=19% Similarity=0.670 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHhhcccChhhh
Q 001810 874 RGLLLGLFFMTVGMSIDPKLL 894 (1010)
Q Consensus 874 ~~~f~PLFFVlIGl~Ldl~~L 894 (1010)
++.++.+||..+|+.+.-+.+
T Consensus 61 NDgLMaiFFf~vGLEiKrE~~ 81 (383)
T PRK14854 61 NDGLMAIYFLYIGLEIKREII 81 (383)
T ss_pred HhhHHHHHHHHHHHHHHHHHh
Confidence 579999999999999875443
No 326
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=34.40 E-value=2e+02 Score=27.48 Aligned_cols=29 Identities=31% Similarity=0.570 Sum_probs=13.3
Q ss_pred HHHhhHHHHHHHhhhHHHHHHHHHHHHHH
Q 001810 283 NLANCETELRRLQSKKEELQKEVDRLNEV 311 (1010)
Q Consensus 283 ~l~~~~~~l~~~~~~~~~lq~~~~~l~~~ 311 (1010)
.+..|+.+++++..++++++++...+...
T Consensus 71 ~~e~le~~i~~l~~~~~~l~~~~~elk~~ 99 (105)
T cd00632 71 RLETIELRIKRLERQEEDLQEKLKELQEK 99 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444433
No 327
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=34.31 E-value=6.9e+02 Score=30.14 Aligned_cols=101 Identities=27% Similarity=0.326 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCcccccCCCCcchhhHHHHHhhhHHHHHHHHHh
Q 001810 207 HEIVNEECIAKEAVHKATMALSLAEARLQVAIESLQDVKQEDDYPEGSTEDDAKSDGKEEDGLLLAAENDIKECQANLAN 286 (1010)
Q Consensus 207 ~~~~~~e~~a~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~l~~ 286 (1010)
|+.+.-+..-.+..+ +--.++.-..-+.-+.+++.+ -+..
T Consensus 13 qr~~~~~~~laq~~k-~~s~~~aq~~~~~a~~~ai~a---------------------------------------~~~~ 52 (459)
T KOG0288|consen 13 QRLIDLNTELAQCEK-AQSRLSAQLVILRAESRAIKA---------------------------------------KLQE 52 (459)
T ss_pred hHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH---------------------------------------HHHH
Q ss_pred hHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHH----HHHHHHHHHHHHHHHHHHhhhcccHHHHHH
Q 001810 287 CETELRRLQSKKEELQKEVDRLNEVAEKAQMNALKAEED----VANIMLLAEQAVAFEIEATQRVNDAEIALQ 355 (1010)
Q Consensus 287 ~~~~l~~~~~~~~~lq~~~~~l~~~~~~a~~~a~~a~~~----~~~~m~~ae~av~~e~ea~~~~~~~e~~l~ 355 (1010)
-|.||+|||..-..|-.|--+.+.-++.---+-..+|.+ .-.||.++||-|-|| .+|+||+
T Consensus 53 ~E~~l~~Lq~e~~~l~e~~v~~~a~~~~~t~~~~~~en~~~r~~~eir~~~~q~~e~~--------n~~~~l~ 117 (459)
T KOG0288|consen 53 KELELNRLQEENTQLNEERVREEATEKTLTVDVLIAENLRIRSLNEIRELREQKAEFE--------NAELALR 117 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc--------cchhhHH
No 328
>PRK09343 prefoldin subunit beta; Provisional
Probab=33.89 E-value=4.8e+02 Score=25.88 Aligned_cols=41 Identities=15% Similarity=0.196 Sum_probs=21.3
Q ss_pred hHHHHHhhhHHHHHHHHHhhHHHHHHHhhhHHHHHHHHHHH
Q 001810 268 GLLLAAENDIKECQANLANCETELRRLQSKKEELQKEVDRL 308 (1010)
Q Consensus 268 ~~~~~a~~~~~~~~~~l~~~~~~l~~~~~~~~~lq~~~~~l 308 (1010)
++..--.+.+.-|...+..||.+...++.+..++|+++..+
T Consensus 71 e~~~~l~~r~E~ie~~ik~lekq~~~l~~~l~e~q~~l~~l 111 (121)
T PRK09343 71 KVEKELKERKELLELRSRTLEKQEKKLREKLKELQAKINEM 111 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444555555555555555555555555554443
No 329
>PF06181 DUF989: Protein of unknown function (DUF989); InterPro: IPR010389 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=33.75 E-value=5.5e+02 Score=29.62 Aligned_cols=37 Identities=11% Similarity=0.019 Sum_probs=19.6
Q ss_pred HHHHHHHHHhhcccChhhhhh-hhhhHHHHHHHHHHHH
Q 001810 876 LLLGLFFMTVGMSIDPKLLLS-NFPVITGALGLLIGGK 912 (1010)
Q Consensus 876 ~f~PLFFVlIGl~Ldl~~L~~-~~~~iilillvvil~K 912 (1010)
+-+|+.|+++.-+.++..-.. +|..+.++++.....|
T Consensus 231 lTlPvLf~MiSnHyp~~y~~~~nWlil~li~~~g~~IR 268 (300)
T PF06181_consen 231 LTLPVLFLMISNHYPMTYGHPYNWLILALIMLAGALIR 268 (300)
T ss_pred eHHHHHHHHHhccCccccccchhHHHHHHHHHHHHHHH
Confidence 668999999866555432221 3433333334334444
No 330
>cd07658 F-BAR_NOSTRIN The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Nitric Oxide Synthase TRaffic INducer (NOSTRIN). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Nitric Oxide Synthase TRaffic INducer (NOSTRIN) is expressed in endothelial and epithelial cells and is involved in the regulation, trafficking and targeting of endothelial NOS (eNOS). NOSTRIN facilitates the endocytosis of eNOS by coordinating the functions of dynamin and the Wiskott-Aldrich syndrome protein (WASP). Increased expression of NOSTRIN may be correlated to preeclampsia. NOSTRIN contains an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules. The F-BAR domain of NOSTRIN is necessary and sufficient fo
Probab=33.65 E-value=6.9e+02 Score=27.57 Aligned_cols=35 Identities=26% Similarity=0.303 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 001810 301 LQKEVDRLNEVAEKAQMNALKAEEDVANIMLLAEQ 335 (1010)
Q Consensus 301 lq~~~~~l~~~~~~a~~~a~~a~~~~~~~m~~ae~ 335 (1010)
-+|+.+++..+.++|+.++.++|.+.-+...-.+.
T Consensus 169 ~~k~~~Kl~~k~~ka~~~~~k~e~~y~~~~~~l~~ 203 (239)
T cd07658 169 QDKEDEKLEAKRKKGEESRLKAENEYYTCCVRLER 203 (239)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46899999999999999999999999887776654
No 331
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=33.61 E-value=1.3e+03 Score=30.64 Aligned_cols=75 Identities=33% Similarity=0.344 Sum_probs=41.5
Q ss_pred HHHhhHHHHHHHhhhHHHHHHHHHHHHH--HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHh
Q 001810 283 NLANCETELRRLQSKKEELQKEVDRLNE--VAEKAQMNALKAEEDVANIMLLAEQAVAFEIEATQRVNDAEIALQRAEKS 360 (1010)
Q Consensus 283 ~l~~~~~~l~~~~~~~~~lq~~~~~l~~--~~~~a~~~a~~a~~~~~~~m~~ae~av~~e~ea~~~~~~~e~~l~~~~~~ 360 (1010)
.+...+.||+-++.+.++||.+++.+-+ ..+.+|+.....+-|- ++...|..|.|- +..-++++++
T Consensus 495 ~le~l~~El~~l~~e~~~lq~~~~~~~qs~~~~~~~l~~~l~~KD~-----~~~~~~~~~~e~-------~~~~~e~e~s 562 (980)
T KOG0980|consen 495 ALESLRQELALLLIELEELQRTLSNLAQSHNNQLAQLEDLLKQKDR-----LAAELVAREEER-------EALRLEAERS 562 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHH-----HHHHHHHHHHHH-------HHHHHHHHhh
Confidence 4556667777777777777777554432 3445556555555553 233333333111 1155677777
Q ss_pred hcCCCCccc
Q 001810 361 LSNSSVDIS 369 (1010)
Q Consensus 361 ~~~~~~~~~ 369 (1010)
+.....|..
T Consensus 563 i~ql~l~~~ 571 (980)
T KOG0980|consen 563 INQLELDSS 571 (980)
T ss_pred HHHhhcccc
Confidence 666665544
No 332
>PF12794 MscS_TM: Mechanosensitive ion channel inner membrane domain 1
Probab=33.59 E-value=8.2e+02 Score=28.44 Aligned_cols=116 Identities=12% Similarity=0.036 Sum_probs=49.7
Q ss_pred HHHHHHhHHHHHHHHHHHHhhcc-cChhhhhhhhhhHHHHHHHHHHHHHHHHHHH-HHhhCCC--------hHHHHHHHH
Q 001810 866 VESDIAPYRGLLLGLFFMTVGMS-IDPKLLLSNFPVITGALGLLIGGKTILVALV-GRLFGVS--------VISAIRTGL 935 (1010)
Q Consensus 866 L~e~l~~i~~~f~PLFFVlIGl~-Ldl~~L~~~~~~iilillvvil~K~l~v~l~-~~~~gl~--------~real~IGl 935 (1010)
+.+.+.-+..++.|+.|+..=.. .+.....+..+-+..++.++.++-+.+-..- ......+ .+.-++..+
T Consensus 125 ~r~~l~~~~~~~~pl~~~~~~~~~~~~~~~~d~LGrl~~ii~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l 204 (340)
T PF12794_consen 125 LRRQLRWLIWVLVPLLFISIFAENLPDGLARDVLGRLAFIILLLLLAVFLWRLLRPGWGLYQPKPDSWIHRLRYLWWPLL 204 (340)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCchhhhhhhHHHHHHHHHHHHHHHHHHHHHccccccccCCCcchhHHHHHHHHHHH
Confidence 34444445567777776654444 4444444434433333333322222221110 0000111 122234444
Q ss_pred HHhhHHHHHHHHHHHHHhCCCCChhh-HHHHHHHHHHHHHHHHHHHH
Q 001810 936 LLAPGGEFAFVAFGEAVNQVCFQPHT-VFLIPNGISIYLQLIMIFFF 981 (1010)
Q Consensus 936 ~LaprG~vaLVLa~iAls~GiIs~~~-lVvlvVVlS~IItPiL~~l~ 981 (1010)
...|.....+++.+.-+....+-... ..+..++...++--++.|+.
T Consensus 205 i~~Pl~li~la~~GY~yTA~~L~~~l~~sl~l~~~~~l~~~l~~Rwl 251 (340)
T PF12794_consen 205 ILAPLALIVLALLGYYYTALQLLERLILSLYLLLGWLLVYQLILRWL 251 (340)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666555555544444433333333 33444444555555566553
No 333
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=33.58 E-value=3.9e+02 Score=34.69 Aligned_cols=50 Identities=24% Similarity=0.332 Sum_probs=29.7
Q ss_pred hhhHHHHHhhhHHHHHHHHHhhHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q 001810 266 EDGLLLAAENDIKECQANLANCETELRRLQSKKEELQKEVDRLNEVAEKA 315 (1010)
Q Consensus 266 ~~~~~~~a~~~~~~~~~~l~~~~~~l~~~~~~~~~lq~~~~~l~~~~~~a 315 (1010)
-++.+..-.++.++.+....+.+.++++++..+.+|+++-.+|.+.-++.
T Consensus 518 ~~~li~~l~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~~~~~~~ 567 (782)
T PRK00409 518 LNELIASLEELERELEQKAEEAEALLKEAEKLKEELEEKKEKLQEEEDKL 567 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555556666666666666666666666666666666655444433
No 334
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=33.57 E-value=2.7e+02 Score=32.11 Aligned_cols=11 Identities=9% Similarity=0.344 Sum_probs=4.6
Q ss_pred HHHHHHhhhcc
Q 001810 338 AFEIEATQRVN 348 (1010)
Q Consensus 338 ~~e~ea~~~~~ 348 (1010)
..+++..++.|
T Consensus 126 ~~~L~~L~ktN 136 (314)
T PF04111_consen 126 SNQLDRLRKTN 136 (314)
T ss_dssp HHHHHCHHT--
T ss_pred HHHHHHHHhcC
Confidence 34555555544
No 335
>PRK07720 fliJ flagellar biosynthesis chaperone; Validated
Probab=33.40 E-value=5.1e+02 Score=26.02 Aligned_cols=133 Identities=18% Similarity=0.128 Sum_probs=73.7
Q ss_pred hHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCcccccCCCCcchhhHHHHHhhhHHHH
Q 001810 202 TLDMVHEIVN-EECIAKEAVHKATMALSLAEARLQVAIESLQDVKQEDDYPEGSTEDDAKSDGKEEDGLLLAAENDIKEC 280 (1010)
Q Consensus 202 ~~~~~~~~~~-~e~~a~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 280 (1010)
.|++|-++.. +|-.|+....+|...+.-++.+|+...+-.+.....-... ...+..-.+...=..-+..-.+.|..-
T Consensus 6 rL~~vL~l~~~~ee~a~~~L~~a~~~~~~~~~~L~~L~~~~~~~~~~~~~~--~~~g~~~~~l~~~~~fl~~L~~~i~~q 83 (146)
T PRK07720 6 RLQKVLELKENEKEKALGEYEEAVSRFEQVAEKLYELLKQKEDLEQAKEEK--LQSGLSIQEIRHYQQFVTNLERTIDHY 83 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555543 4455666666677777777776655433332221110000 000000111222233344556677777
Q ss_pred HHHHHhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 001810 281 QANLANCETELRRLQSKKEELQKEVDRLNEVAEKAQMNALKAEEDVANIMLLAEQAVAFEIEA 343 (1010)
Q Consensus 281 ~~~l~~~~~~l~~~~~~~~~lq~~~~~l~~~~~~a~~~a~~a~~~~~~~m~~ae~av~~e~ea 343 (1010)
+..+..|+.++++-+....+.++++..+.-+-|+......+. ....||..-+|+=+
T Consensus 84 ~~~v~~~~~~ve~~r~~~~ea~~~~k~~ekLker~~~~~~~~-------e~r~EQk~~DE~a~ 139 (146)
T PRK07720 84 QLLVMQAREQMNRKQQDLTEKNIEVKKYEKMKEKKQEMFALE-------EKAAEMKEMDEISI 139 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHH
Confidence 788888888888888888888888877777777665444333 34567777777643
No 336
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=33.32 E-value=2.5e+02 Score=32.82 Aligned_cols=89 Identities=21% Similarity=0.161 Sum_probs=56.2
Q ss_pred hHHHHHhhhHHHHHHHHHhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhh-----HHHHHHHHHHHHHHHHHHHH
Q 001810 268 GLLLAAENDIKECQANLANCETELRRLQSKKEELQKEVDRLNEVAEKAQMNALKA-----EEDVANIMLLAEQAVAFEIE 342 (1010)
Q Consensus 268 ~~~~~a~~~~~~~~~~l~~~~~~l~~~~~~~~~lq~~~~~l~~~~~~a~~~a~~a-----~~~~~~~m~~ae~av~~e~e 342 (1010)
+.+-.-.||+++-+. +++++.++|..+.-+||+-.|-|+.+-+.|+-++.+. +|-+-..|-|-+| ++|
T Consensus 235 ~slkRt~EeL~~G~~---kL~~~~etLEqq~~~L~~niDIL~~k~~eal~~~~n~~~~~~D~~~~~~~~l~kq----~l~ 307 (365)
T KOG2391|consen 235 ESLKRTEEELNIGKQ---KLVAMKETLEQQLQSLQKNIDILKSKVREALEKAENLEALDIDEAIECTAPLYKQ----ILE 307 (365)
T ss_pred HHHHhhHHHHHhhHH---HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccCcCCCchhhhhccchHHHH----HHH
Confidence 333333444554443 3445555666677788888888888888887777664 3555666777766 556
Q ss_pred HhhhcccHHHHHHHHHHhhcC
Q 001810 343 ATQRVNDAEIALQRAEKSLSN 363 (1010)
Q Consensus 343 a~~~~~~~e~~l~~~~~~~~~ 363 (1010)
.++-=+-.|.|+---+|+++.
T Consensus 308 ~~A~d~aieD~i~~L~~~~r~ 328 (365)
T KOG2391|consen 308 CYALDLAIEDAIYSLGKSLRD 328 (365)
T ss_pred hhhhhhHHHHHHHHHHHHHhc
Confidence 666555556666666666654
No 337
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=32.79 E-value=1e+03 Score=31.15 Aligned_cols=62 Identities=23% Similarity=0.350 Sum_probs=52.2
Q ss_pred hhHHHHHhhhHHHHHHHHHhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 001810 267 DGLLLAAENDIKECQANLANCETELRRLQSKKEELQKEVDRLNEVAEKAQMNALKAEEDVAN 328 (1010)
Q Consensus 267 ~~~~~~a~~~~~~~~~~l~~~~~~l~~~~~~~~~lq~~~~~l~~~~~~a~~~a~~a~~~~~~ 328 (1010)
++-+...+.+..+.+..|..|..+|+.++.+..|+++.+..|+-..+.++-....+|..+-+
T Consensus 595 ~eelE~le~eK~~Le~~L~~~~d~lE~~~~qL~E~E~~L~eLq~eL~~~keS~s~~E~ql~~ 656 (769)
T PF05911_consen 595 EEELEKLESEKEELEMELASCQDQLESLKNQLKESEQKLEELQSELESAKESNSLAETQLKA 656 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777888899999999999999999999999999999888888887777776544
No 338
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=32.66 E-value=1.1e+03 Score=29.59 Aligned_cols=23 Identities=22% Similarity=0.189 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHhhhcccHHHHH
Q 001810 332 LAEQAVAFEIEATQRVNDAEIAL 354 (1010)
Q Consensus 332 ~ae~av~~e~ea~~~~~~~e~~l 354 (1010)
...|..-.|++..++.++-||==
T Consensus 204 n~~q~Lleel~f~~~~h~~eI~e 226 (546)
T KOG0977|consen 204 NRVQTLLEELAFLKRIHKQEIEE 226 (546)
T ss_pred hHHHHHHHHHHHHHhccHHHHHH
Confidence 45677778888888888877743
No 339
>TIGR02865 spore_II_E stage II sporulation protein E. Stage II sporulation protein E (SpoIIE) is a multiple membrane spanning protein with two separable functions. It plays a role in the switch to polar cell division during sporulation. By means of it protein phosphatase activity, located in the C-terminal region, it activates sigma-F. All proteins that score above the trusted cutoff to this model are found in endospore-forming Gram-positive bacteria. Surprisingly, a sequence from the Cyanobacterium-like (and presumably non-spore-forming) photosynthesizer Heliobacillus mobilis is homologous, and scores between the trusted and noise cutoffs.
Probab=32.53 E-value=1.2e+03 Score=30.19 Aligned_cols=11 Identities=18% Similarity=0.570 Sum_probs=5.8
Q ss_pred HHHHHHHHHcC
Q 001810 848 LGAFLAGLLLA 858 (1010)
Q Consensus 848 LGAFiAGLiLs 858 (1010)
++++++|++=+
T Consensus 225 f~GLlaG~fk~ 235 (764)
T TIGR02865 225 FAGLLGGIFKE 235 (764)
T ss_pred HHHHHHHhhcc
Confidence 44555665543
No 340
>PF14932 HAUS-augmin3: HAUS augmin-like complex subunit 3
Probab=32.21 E-value=6.7e+02 Score=27.99 Aligned_cols=99 Identities=25% Similarity=0.246 Sum_probs=67.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCcccccCCCCcchhhHHHHHhhhHHHHHHHHHhhHHH
Q 001810 211 NEECIAKEAVHKATMALSLAEARLQVAIESLQDVKQEDDYPEGSTEDDAKSDGKEEDGLLLAAENDIKECQANLANCETE 290 (1010)
Q Consensus 211 ~~e~~a~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~l~~~~~~ 290 (1010)
.+|+.+.+..++... -|-+..|..|.+.+... .|.... .++..+..-.+++..++....-++..
T Consensus 27 ~~El~~~~~L~~~Gk--iLeg~~Ld~aL~~~~~~-----~~~~~~---------~~e~~le~Le~el~~l~~~~~~~~~~ 90 (256)
T PF14932_consen 27 EEELQAFEELQKSGK--ILEGEALDEALKTISAF-----SPKLLE---------LEEEDLEALEEELEALQEYKELYEQL 90 (256)
T ss_pred HHHHHHHHHHHHcCC--cCCHHHHHHHHHHcccc-----cCCccc---------cchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468888888888887 35566677777776662 222111 13456666666777777777777777
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 001810 291 LRRLQSKKEELQKEVDRLNEVAEKAQMNALKAEED 325 (1010)
Q Consensus 291 l~~~~~~~~~lq~~~~~l~~~~~~a~~~a~~a~~~ 325 (1010)
+..+|.-+..+.++..+|+.+-+.++..-.++...
T Consensus 91 ~~~lq~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~ 125 (256)
T PF14932_consen 91 RNKLQQLDSSLSQELSELEGKEEEAQKKLKKAQKE 125 (256)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 78888888888888888888776666655555554
No 341
>KOG1278 consensus Endosomal membrane proteins, EMP70 [Intracellular trafficking, secretion, and vesicular transport]
Probab=32.19 E-value=3.7e+02 Score=33.53 Aligned_cols=205 Identities=14% Similarity=0.141 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHhhhcccCcHHHHHHHHHHcCCCCChhhHHHHHHHHhHHHHHHHHHHHH
Q 001810 686 GLGSAQVLVTAVVVGLVAHFVSGLPGPASIVIGNGLALSSTAVVLQVLQERGESTSRHGRATFSVLLFQDLAVVVLLILI 765 (1010)
Q Consensus 686 ~LAlv~vllt~~~Vg~la~~l~Gls~~~ALLLGaILSaTSpAVvv~IL~elg~l~s~vGrLlL~~SllnDi~aIVLfali 765 (1010)
.++.+.+.+.+.++|++.+.--|-=...++++=+.+...+-=+..++-+-.+ .+..-...++...++--++-.+.|.+-
T Consensus 340 ~l~M~~vti~fA~lGflSPs~RGsLmT~~~~l~v~~G~~agY~s~rlyk~~~-g~~wk~~~~lta~l~PGivf~~~f~lN 418 (628)
T KOG1278|consen 340 LLGMILVTIFFACLGFLSPSSRGSLMTAMVLLFVFMGFVAGYVSARLYKTFK-GREWKRNAILTAFLFPGIVFAIFFVLN 418 (628)
T ss_pred hhHHHHHHHHHHHhccCCccccccHHHHHHHHHHHHHHhhhhhhhhhHhhhc-CCcchhhHHhhhhhcchHHHHHHHHHH
Q ss_pred HhhcCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhchh
Q 001810 766 PLISPNSSKGGVGFQAIAEALGVAAVKAAVAITAIIAGGRLLLRPIYKQIAENQNAEIFSANTLLVILGTSLLTARAGLS 845 (1010)
Q Consensus 766 ~~ls~~~s~g~isl~~I~~~Lg~~ll~vilgiii~llvg~~llr~llr~i~~~~~~ei~l~ltLll~f~~~llAe~lGlS 845 (1010)
..+.+..++|.+++..+...+..-++.-+=...+|..+| ..++....-.|.+...-.+ -.+.+-++
T Consensus 419 ~~lW~~~SSgAvPF~T~~~ll~LwF~isVPLsf~G~y~g--~kk~~~e~PvrTNqIpRqI------------P~q~~y~~ 484 (628)
T KOG1278|consen 419 FFLWGKHSSGAVPFSTMVALLFLWFGISVPLSFVGGYFG--FKKPAIEHPVRTNQIPRQI------------PEQPWYLN 484 (628)
T ss_pred HHhhcCCCCCcccHHHHHHHHHHHHHhhhhHHHhhHHhh--ccCCCCCCCcccCCCcccC------------CCCccccc
Q ss_pred HHHHHHHHHHHcCCCchhHHHHHHHHhHHHHHHHHHHHHhhcccChhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHh
Q 001810 846 MALGAFLAGLLLAETEFSLQVESDIAPYRGLLLGLFFMTVGMSIDPKLLLSNFPVITGALGLLIGGKTILVALVGRL 922 (1010)
Q Consensus 846 gvLGAFiAGLiLs~~~~~~~L~e~l~~i~~~f~PLFFVlIGl~Ldl~~L~~~~~~iilillvvil~K~l~v~l~~~~ 922 (1010)
++.|.+++|++ |+..+|+=+||++-.+=.+ .+...+++.++.++++++.-.-...+.+++
T Consensus 485 ~~~~ili~Gil---------------PFg~ifIELfFI~~SiW~~--qfYY~FGFLFlvfiiLvvtcaeisIvl~Yf 544 (628)
T KOG1278|consen 485 PIPSILIAGIL---------------PFGAIFIELFFILSSIWLN--QFYYMFGFLFLVFIILVVTCAEISIVLTYF 544 (628)
T ss_pred hhhHHHhhccc---------------chHHHHHHHHHHHHHHHhh--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 342
>PRK15335 type III secretion system protein SpaM; Provisional
Probab=32.18 E-value=5.7e+02 Score=26.16 Aligned_cols=36 Identities=17% Similarity=0.363 Sum_probs=28.9
Q ss_pred HHHHHHHHhhHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 001810 278 KECQANLANCETELRRLQSKKEELQKEVDRLNEVAE 313 (1010)
Q Consensus 278 ~~~~~~l~~~~~~l~~~~~~~~~lq~~~~~l~~~~~ 313 (1010)
.-..-.+.|.+.++-.||.|++|||||-+.+++...
T Consensus 76 aivRRQ~~~L~Lq~~~iqEKr~elqkeke~~~k~~~ 111 (147)
T PRK15335 76 SIVRRQIKDLELQIIQIQEKRSELEKKREEFQKKSK 111 (147)
T ss_pred HHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 334456677788999999999999999999887654
No 343
>PRK14853 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=31.85 E-value=5.5e+02 Score=31.09 Aligned_cols=21 Identities=29% Similarity=0.610 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHhhcccChhh
Q 001810 873 YRGLLLGLFFMTVGMSIDPKL 893 (1010)
Q Consensus 873 i~~~f~PLFFVlIGl~Ldl~~ 893 (1010)
+++.++.+||..+|+.+.-+.
T Consensus 66 iNDgLMaiFFf~vGLEiKrE~ 86 (423)
T PRK14853 66 AADGLLAIFFFVVGLELKREF 86 (423)
T ss_pred HHHhhHHHHHHHHHHHHhHHH
Confidence 368999999999999996443
No 344
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=31.73 E-value=84 Score=28.70 Aligned_cols=41 Identities=37% Similarity=0.576 Sum_probs=33.0
Q ss_pred hhHHHHHHHHHhhHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q 001810 275 NDIKECQANLANCETELRRLQSKKEELQKEVDRLNEVAEKA 315 (1010)
Q Consensus 275 ~~~~~~~~~l~~~~~~l~~~~~~~~~lq~~~~~l~~~~~~a 315 (1010)
+-|+..++...+.|.++..+..+.+++.++++.|.+.+..+
T Consensus 33 ~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~~~l~~~ 73 (74)
T PF12329_consen 33 NTIKKLRAKIKELEKQIKELKKKLEELEKELESLEERLKRA 73 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 45777788888888888888888888888888888876543
No 345
>PHA03246 large tegument protein UL36; Provisional
Probab=31.53 E-value=1.5e+03 Score=33.55 Aligned_cols=52 Identities=17% Similarity=0.429 Sum_probs=36.8
Q ss_pred hhhHHHHHhhhHHHHHHHHHhhHHHHHHHh-----------hhHHHHHHHHHHHHHHHHHHHH
Q 001810 266 EDGLLLAAENDIKECQANLANCETELRRLQ-----------SKKEELQKEVDRLNEVAEKAQM 317 (1010)
Q Consensus 266 ~~~~~~~a~~~~~~~~~~l~~~~~~l~~~~-----------~~~~~lq~~~~~l~~~~~~a~~ 317 (1010)
+...+.+|+..+......++.||.+|..+. -+..||+|-|.--++.++..++
T Consensus 1312 da~~i~aa~~av~aa~~~~~~~e~~L~~l~~~~~~~~s~~~R~~qdL~K~i~aarqR~~Ele~ 1374 (3095)
T PHA03246 1312 DASVIVSAKAEVSAATQQAGDCKDALTALENEPLTYNPHIQRKIAELNKLIESVNQRVGELDI 1374 (3095)
T ss_pred cHHHHHHHHHHHHHHHHHhhhhhHHHhcCccCccCCCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346778999999999999999999887763 4455777766555554444433
No 346
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=31.53 E-value=1.2e+02 Score=29.00 Aligned_cols=44 Identities=16% Similarity=0.253 Sum_probs=29.4
Q ss_pred hhhHHHHHhhhHHHHHHHHHhhHHHHHHHhhhHHHHHHHHHHHH
Q 001810 266 EDGLLLAAENDIKECQANLANCETELRRLQSKKEELQKEVDRLN 309 (1010)
Q Consensus 266 ~~~~~~~a~~~~~~~~~~l~~~~~~l~~~~~~~~~lq~~~~~l~ 309 (1010)
.+++...=.+.+..++..+.+|+.++..++.+..++++++..++
T Consensus 61 ~~ea~~~Le~~~e~le~~i~~l~~~~~~l~~~~~elk~~l~~~~ 104 (105)
T cd00632 61 KEEARTELKERLETIELRIKRLERQEEDLQEKLKELQEKIQQAQ 104 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34555555666666777777777777777777777777766553
No 347
>PF04129 Vps52: Vps52 / Sac2 family ; InterPro: IPR007258 Vps52 complexes with Vps53 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [].
Probab=31.44 E-value=1.6e+02 Score=36.10 Aligned_cols=57 Identities=23% Similarity=0.327 Sum_probs=49.2
Q ss_pred CCcchhhHHHHHhhhHHHHHHHHHhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 001810 262 DGKEEDGLLLAAENDIKECQANLANCETELRRLQSKKEELQKEVDRLNEVAEKAQMN 318 (1010)
Q Consensus 262 ~~~~~~~~~~~a~~~~~~~~~~l~~~~~~l~~~~~~~~~lq~~~~~l~~~~~~a~~~ 318 (1010)
|-.+|.+.+..=..+|++|...|..+|+-|..-|+....+..|+..|++.+.+-...
T Consensus 8 dy~~e~~~~~~Lh~~i~~cd~~L~~le~~L~~Fq~~L~~iS~eI~~LQ~~S~~l~~~ 64 (508)
T PF04129_consen 8 DYLKESENFADLHNQIQECDSILESLEEMLSNFQNDLGSISSEIRSLQERSSSLNVK 64 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455677788888899999999999999999999999999999999999988765443
No 348
>KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton]
Probab=31.36 E-value=8.1e+02 Score=30.79 Aligned_cols=32 Identities=16% Similarity=0.111 Sum_probs=19.1
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHhhhhhHHHHH
Q 001810 146 EPPTTDELRELLMNAMKELEVAQLNSTMFEEK 177 (1010)
Q Consensus 146 ~~~~~~~l~~~l~~a~~~le~a~~~~~~~e~~ 177 (1010)
+.+..--+++-+++.+.+|+.-+-+.+.-++.
T Consensus 353 ~kd~~~~~~~~~~~~~~sl~~~~~~E~~~~de 384 (607)
T KOG0240|consen 353 KKDKNVALKEELEKLRNSLKRWRNGEEVKEDE 384 (607)
T ss_pred HHhHHHHHHHHHHHHHHHHhhhcccCcccchh
Confidence 34445566777777777777655555444433
No 349
>PRK14856 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=30.92 E-value=3.4e+02 Score=32.90 Aligned_cols=21 Identities=38% Similarity=0.866 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHhhcccChhhh
Q 001810 874 RGLLLGLFFMTVGMSIDPKLL 894 (1010)
Q Consensus 874 ~~~f~PLFFVlIGl~Ldl~~L 894 (1010)
.+.++.+||..+|+.+.-+.+
T Consensus 73 NDgLMaiFFf~VGLEIKrE~~ 93 (438)
T PRK14856 73 DDVLMALFFLMIGLEIKRELL 93 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 589999999999999875443
No 350
>TIGR02921 PEP_integral PEP-CTERM family integral membrane protein. Members of this protein family, found in three different species so far, have a PEP-CTERM sequence at the carboxyl-terminus (see model TIGR02595), but are unusual among PEP-CTERM proteins in having multiple predicted transmembrane segments. The function is unknown. It is proposed that a member of the EpsH family, to be designated exosortase (see TIGR02602), recognizes and cleaves PEP-CTERM proteins in a manner analogous to the cleavage of LPXTG proteins by sortase (see Haft, et al., 2006).
Probab=30.87 E-value=1e+03 Score=30.25 Aligned_cols=84 Identities=13% Similarity=-0.017 Sum_probs=41.7
Q ss_pred CchhHHHHHHHHhHHHHHHHHHHHHhhcccChhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhCCCh---HHHHHHHHH
Q 001810 860 TEFSLQVESDIAPYRGLLLGLFFMTVGMSIDPKLLLSNFPVITGALGLLIGGKTILVALVGRLFGVSV---ISAIRTGLL 936 (1010)
Q Consensus 860 ~~~~~~L~e~l~~i~~~f~PLFFVlIGl~Ldl~~L~~~~~~iilillvvil~K~l~v~l~~~~~gl~~---real~IGl~ 936 (1010)
..+.++-...+.-++++=.|+||+++--.+-+..+.....- +++...+.+.-+++|...++-++++. +-.+...+.
T Consensus 69 ~~f~~~p~~liklfygve~pi~~i~l~~lflirel~p~~s~-ili~~~i~i~a~~~~l~~g~~sr~~~glqw~~l~~~~~ 147 (952)
T TIGR02921 69 TCFLKNPTALIKLFYGVEAPIFFICLLRLFLIRELNPASSH-ILINIGIAIAAFAACLFGGVASRFKIGLQWLQLLAAML 147 (952)
T ss_pred hhhhcCcHHHHHHHHcccchHHHHHHHHHHHHHhcCcchhh-HHHHHHHHHHHHHHHHhhcchhcccchHHHHHHHHHHH
Confidence 34555556667777888899999987655544444332111 22222223334444444444333332 233344444
Q ss_pred HhhHHHHH
Q 001810 937 LAPGGEFA 944 (1010)
Q Consensus 937 LaprG~va 944 (1010)
|..-|...
T Consensus 148 ml~~giy~ 155 (952)
T TIGR02921 148 MLLFGIYA 155 (952)
T ss_pred HHHHHHHH
Confidence 55555443
No 351
>PF11855 DUF3375: Protein of unknown function (DUF3375); InterPro: IPR021804 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 479 to 499 amino acids in length.
Probab=30.86 E-value=37 Score=41.15 Aligned_cols=53 Identities=25% Similarity=0.343 Sum_probs=47.4
Q ss_pred hhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 001810 286 NCETELRRLQSKKEELQKEVDRLNEVAEKAQMNALKAEEDVANIMLLAEQAVAF 339 (1010)
Q Consensus 286 ~~~~~l~~~~~~~~~lq~~~~~l~~~~~~a~~~a~~a~~~~~~~m~~ae~av~~ 339 (1010)
+=+..++.|+.+|+++|+|++++..= +...++..++.|.+.+|.-+|++=-++
T Consensus 141 Dp~~Ri~~Le~e~~~i~~EI~~l~aG-~~~~ld~~~~~er~~~i~~la~~L~~D 193 (478)
T PF11855_consen 141 DPERRIAELEREIAEIDAEIDRLEAG-DVPVLDDTQARERARQILQLARELPAD 193 (478)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHCC-CCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 34678999999999999999999988 888999999999999999999986554
No 352
>PRK09578 periplasmic multidrug efflux lipoprotein precursor; Reviewed
Probab=30.73 E-value=1.6e+02 Score=34.26 Aligned_cols=17 Identities=18% Similarity=-0.099 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHH
Q 001810 223 ATMALSLAEARLQVAIE 239 (1010)
Q Consensus 223 ~~~~~~~a~~~~~~~~~ 239 (1010)
|...+..|+.++++..+
T Consensus 113 a~a~l~~a~~~~~R~~~ 129 (385)
T PRK09578 113 AEAAHLAALDKRRRYDD 129 (385)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33344444444444443
No 353
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=30.33 E-value=1.6e+02 Score=31.74 Aligned_cols=55 Identities=29% Similarity=0.394 Sum_probs=35.5
Q ss_pred hhhHHHHHHHHHhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 001810 274 ENDIKECQANLANCETELRRLQSKKEELQKEVDRLNEVAEKAQMNALKAEEDVAN 328 (1010)
Q Consensus 274 ~~~~~~~~~~l~~~~~~l~~~~~~~~~lq~~~~~l~~~~~~a~~~a~~a~~~~~~ 328 (1010)
.+.|++-+..+.+.+.+..-+-++|++..+|+.||..-+++.+.+..++|-.-.+
T Consensus 130 e~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lks~~~~l~~~~~~~e~~F~~ 184 (190)
T PF05266_consen 130 ESEIKELEMKILELQRQAAKLKEKKEAKDKEISRLKSEAEALKEEIENAELEFQS 184 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666666666666666667777777777777777776666666655444
No 354
>PF05565 Sipho_Gp157: Siphovirus Gp157; InterPro: IPR008840 This family contains both viral and bacterial proteins which are related to the Gp157 protein of the Streptococcus thermophilus SFi bacteriophage. It is thought that bacteria possessing the gene coding for this protein have an increased resistance to the bacteriophage [].
Probab=30.19 E-value=1.1e+02 Score=31.89 Aligned_cols=35 Identities=34% Similarity=0.663 Sum_probs=20.9
Q ss_pred HHHHHHHHHhhHHHHHHHhhhHHHHHHHHHHHHHH
Q 001810 277 IKECQANLANCETELRRLQSKKEELQKEVDRLNEV 311 (1010)
Q Consensus 277 ~~~~~~~l~~~~~~l~~~~~~~~~lq~~~~~l~~~ 311 (1010)
|+..++...-|.+|.+|++.+|...++.+++|.+.
T Consensus 49 Ik~~ea~~e~~k~E~krL~~rkk~~e~~~~~Lk~y 83 (162)
T PF05565_consen 49 IKNLEADIEAIKAEIKRLQERKKSIENRIDRLKEY 83 (162)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555566666666666666666666666544
No 355
>PRK11578 macrolide transporter subunit MacA; Provisional
Probab=30.00 E-value=3.6e+02 Score=31.18 Aligned_cols=41 Identities=24% Similarity=0.341 Sum_probs=28.1
Q ss_pred HhhhHHHHHHHHHhhHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 001810 273 AENDIKECQANLANCETELRRLQSKKEELQKEVDRLNEVAE 313 (1010)
Q Consensus 273 a~~~~~~~~~~l~~~~~~l~~~~~~~~~lq~~~~~l~~~~~ 313 (1010)
++.++...++.+.+.+.++++.+.+.+..+.+.+|.+++.+
T Consensus 97 ~~~~~~~~~a~l~~~~~~l~~a~~~l~~a~~~~~r~~~L~~ 137 (370)
T PRK11578 97 AENQIKEVEATLMELRAQRQQAEAELKLARVTLSRQQRLAK 137 (370)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555566667777777777777777777777777766654
No 356
>TIGR01625 YidE_YbjL_dupl AspT/YidE/YbjL antiporter duplication domain. This model represents a domain that is duplicated the aspartate-alanine antiporter AspT, as well as HI0035 of Haemophilus influenzae, YidE and YbjL of E. coli, and a number of other known or putative transporters. Member proteins may have 0, 1, or 2 copies of TrkA potassium uptake domain pfam02080 between the duplications. The domain contains several apparent transmembrane regions and is proposed here to act in transport.
Probab=29.95 E-value=1.7e+02 Score=30.39 Aligned_cols=86 Identities=22% Similarity=0.231 Sum_probs=49.8
Q ss_pred hhHHHHHHHHHHHcCCCc----hhHHHHHH-HHhHHHHHHHHHHHHhhcccChh---hhhhhh--hhHHHHHHHHHHHHH
Q 001810 844 LSMALGAFLAGLLLAETE----FSLQVESD-IAPYRGLLLGLFFMTVGMSIDPK---LLLSNF--PVITGALGLLIGGKT 913 (1010)
Q Consensus 844 lSgvLGAFiAGLiLs~~~----~~~~L~e~-l~~i~~~f~PLFFVlIGl~Ldl~---~L~~~~--~~iilillvvil~K~ 913 (1010)
+...-|++++|+++++.. ....+... ...++++.+.+|...+|++.-.. .+.... .......++.++.-.
T Consensus 21 LG~~~G~L~vgL~~G~~~~~~p~~~~~p~~~~~~l~~~GL~lFl~~vGl~aG~~f~~~l~~~gg~~~~~~g~~v~~~~~~ 100 (154)
T TIGR01625 21 LGNAGGVLFVGLLLGHFGATGPLTWYIPFSANLFIREFGLMLFLYGVGLSAGPGFFSSLKDGGGLLRINGGALITVVPTL 100 (154)
T ss_pred ecccHHHHHHHHHHHhccccCCcceecChhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcChHHHHHHHHHHHHHHHH
Confidence 334557888888887643 22333222 23347788999999999988644 333322 122222233333345
Q ss_pred HHHHHHHHhhCCChHH
Q 001810 914 ILVALVGRLFGVSVIS 929 (1010)
Q Consensus 914 l~v~l~~~~~gl~~re 929 (1010)
+..++..+++++++-.
T Consensus 101 ~~~~~~~~~~~~~~~~ 116 (154)
T TIGR01625 101 LVAVALIKLLRINYAL 116 (154)
T ss_pred HHHHHHHHHhCCCHHH
Confidence 5666777888988753
No 357
>PRK05771 V-type ATP synthase subunit I; Validated
Probab=29.63 E-value=1.9e+02 Score=36.47 Aligned_cols=33 Identities=24% Similarity=0.504 Sum_probs=23.0
Q ss_pred HHHHHHHhhHHHHHHHhhhHHHHHHHHHHHHHH
Q 001810 279 ECQANLANCETELRRLQSKKEELQKEVDRLNEV 311 (1010)
Q Consensus 279 ~~~~~l~~~~~~l~~~~~~~~~lq~~~~~l~~~ 311 (1010)
+....+.+.++|+++++.++.+|++|.+++++.
T Consensus 90 ~~~~~~~~~~~~i~~l~~~~~~L~~~~~~l~~~ 122 (646)
T PRK05771 90 DVEEELEKIEKEIKELEEEISELENEIKELEQE 122 (646)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566677777777777777777777777654
No 358
>KOG2189 consensus Vacuolar H+-ATPase V0 sector, subunit a [Energy production and conversion]
Probab=29.46 E-value=83 Score=40.15 Aligned_cols=39 Identities=31% Similarity=0.480 Sum_probs=35.3
Q ss_pred hhhHHHHHHHHHhhHHHHHHHhhhHHHHHHHHHHHHHHH
Q 001810 274 ENDIKECQANLANCETELRRLQSKKEELQKEVDRLNEVA 312 (1010)
Q Consensus 274 ~~~~~~~~~~l~~~~~~l~~~~~~~~~lq~~~~~l~~~~ 312 (1010)
..|+-|.+++|.+||.||+++..++++|++.-..|.|..
T Consensus 91 ~~~i~dle~~l~klE~el~eln~n~~~L~~n~~eL~E~~ 129 (829)
T KOG2189|consen 91 PREIIDLEEQLEKLESELRELNANKEALKANYNELLELK 129 (829)
T ss_pred chHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 357889999999999999999999999999988888865
No 359
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=29.40 E-value=8.6e+02 Score=27.41 Aligned_cols=27 Identities=22% Similarity=0.149 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHH
Q 001810 151 DELRELLMNAMKELEVAQLNSTMFEEK 177 (1010)
Q Consensus 151 ~~l~~~l~~a~~~le~a~~~~~~~e~~ 177 (1010)
.++.-.+=|.---+=.|=+.|+.+|-+
T Consensus 78 ~~~~~~~~R~~lAvliaivIs~pl~l~ 104 (301)
T PF14362_consen 78 KRLLQALPRLLLAVLIAIVISEPLELK 104 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555666677777766543
No 360
>PF00873 ACR_tran: AcrB/AcrD/AcrF family; InterPro: IPR001036 The Escherichia coli acrA and acrB genes encode a multi-drug efflux system that is believed to protect the bacterium against hydrophobic inhibitors []. The E. coli AcrB protein is a transporter that is energized by proton-motive force and that shows the widest substrate specificity among all known multidrug pumps, ranging from most of the currently used antibiotics, disinfectants, dyes, and detergents to simple solvents. The structure of ligand-free AcrB shows that it is a homotrimer of 110kDa per subunit. Each subunit contains 12 transmembrane helices and two large periplasmic domains (each exceeding 300 residues) between helices 1 and 2, and helices 7 and 8. X-ray analysis of the overexpressed AcrB protein demonstrated that the three periplasmic domains form, in the centre, a funnel-like structure and a connected narrow (or closed) pore. The pore is opened to the periplasm through three vestibules located at subunit interfaces. These vestibules were proposed to allow direct access of drugs from the periplasm as well as the outer leaflet of the cytoplasmic membrane. The three transmembrane domains of AcrB protomers form a large, 30A-wide central cavity that spans the cytoplasmic membrane and extends to the cytoplasm X-ray crystallographic structures of the trimeric AcrB pump from E. coli with four structurally diverse ligands demonstrated that three molecules of ligand bind simultaneously to the extremely large central cavity of 5000 cubic angstroms, primarily by hydrophobic, aromatic stacking and van der Waals interactions. Each ligand uses a slightly different subset of AcrB residues for binding. The bound ligand molecules often interact with each other, stabilising the binding. ; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 2V50_B 1T9U_A 2HRT_B 3NOC_A 3NOG_A 4DX7_A 1OYD_A 3AOB_A 1T9V_A 4DX6_B ....
Probab=29.37 E-value=4.1e+02 Score=35.32 Aligned_cols=41 Identities=7% Similarity=0.083 Sum_probs=21.7
Q ss_pred hchhhHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHhhhc
Q 001810 679 SMKKYVFGLGSAQVLVTAVVVGLVAHFVSGLPGPASIVIGNGL 721 (1010)
Q Consensus 679 r~~k~il~LAlv~vllt~~~Vg~la~~l~Gls~~~ALLLGaIL 721 (1010)
++||..+++++. +.++ ++.++++.+++|++...--+.|.++
T Consensus 353 ~~~r~~liv~~~-IPis-i~~t~~~m~~~g~slN~~SL~gl~l 393 (1021)
T PF00873_consen 353 RNWRSALIVALS-IPIS-ILGTFIFMYLFGISLNIMSLAGLIL 393 (1021)
T ss_dssp TSHHHHHHHHHH-HHHH-HHHHHHHHHHTTTTBEHHHHHHHHH
T ss_pred cchHHHHHHHHH-HHHH-HHHHHHHHHHcCCCchHHHHHhHHH
Confidence 455555544432 3332 3556667788898864433333333
No 361
>PF04632 FUSC: Fusaric acid resistance protein family; InterPro: IPR006726 This entry represents the p-hydroxybenzoic acid efflux pump subunit AaeB (pHBA efflux pump protein B) whose substrates are p-hydroxybenzoic acid (pHBA), 6-hydroxy-2-naphthoic and 2-hydroxycinnamate. It could function as a metabolic relief valve, allowing to eliminate certain compounds when they accumulate to high levels in the cell []. This family also includes fusaric acid resistance proteins [], which are likely to be membrane transporter proteins, and uncharacterised transporter YdhK.; GO: 0006810 transport, 0005886 plasma membrane
Probab=29.37 E-value=9.1e+02 Score=29.95 Aligned_cols=36 Identities=17% Similarity=0.330 Sum_probs=18.7
Q ss_pred chhhHHHHHHHHHHhhchhHHHHHHH-Hhhhhhhhccchhh
Q 001810 509 TQASIFQGLMEYARKQLPKLVLGFLL-FGAGVAFYANQAER 548 (1010)
Q Consensus 509 ~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~g~~~~~~~~~~ 548 (1010)
.|..+|...+.-. --.++|++. .-+...|++.++.+
T Consensus 120 ~p~~~f~~a~~R~----~ei~iGi~~a~~v~~l~~P~~~~~ 156 (650)
T PF04632_consen 120 NPEQVFDLALWRV----LEILIGILCATLVSMLFFPQRARR 156 (650)
T ss_pred CccHHHHHHHHHH----HHHHHHHHHHHHHHHHhCCccHHH
Confidence 4555665444433 245666663 34555566655444
No 362
>PRK10478 putative PTS system fructose-like transporter subunit EIIC; Provisional
Probab=29.17 E-value=2.9e+02 Score=32.69 Aligned_cols=14 Identities=29% Similarity=0.520 Sum_probs=8.0
Q ss_pred hHHHHHHHHHHHcC
Q 001810 845 SMALGAFLAGLLLA 858 (1010)
Q Consensus 845 SgvLGAFiAGLiLs 858 (1010)
++++|+.++|++.+
T Consensus 101 ~GFlGaii~G~laG 114 (359)
T PRK10478 101 AGFFGALIAGIIGG 114 (359)
T ss_pred cchHHHHHHHHHHH
Confidence 45666666555544
No 363
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=29.12 E-value=1.6e+03 Score=30.30 Aligned_cols=142 Identities=14% Similarity=0.103 Sum_probs=80.2
Q ss_pred HhhhhhHHHHHHHHHHHHHHhchh-------HHHHHHHhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHH
Q 001810 167 AQLNSTMFEEKAQRISEAAIALKD-------EAANAWNNVNVTLDMVHEIVNEECIAKEAVHKATMALS-------LAEA 232 (1010)
Q Consensus 167 a~~~~~~~e~~~~~~~~~ai~~~d-------~~~~~~~~~~~~~~~~~~~~~~e~~a~~~~~~~~~~~~-------~a~~ 232 (1010)
|+-+=.-.++.++.|.-.-..|++ +....|+..+....-+|++.+++-.+..-++...-.+. .-+.
T Consensus 260 ~k~~~r~l~k~~~pi~~~~eeLe~~~~et~~~~s~~~~~~~e~~~k~~~~~ek~~~~~~~v~~~~~~le~lk~~~~~rq~ 339 (1072)
T KOG0979|consen 260 AKKELRKLEKEIKPIEDKKEELESEKKETRSKISQKQRELNEALAKVQEKFEKLKEIEDEVEEKKNKLESLKKAAEKRQK 339 (1072)
T ss_pred HHHHHHHHHHhhhhhhhhhhhHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445577788888888888877 45678999999999999988885554444443333332 2345
Q ss_pred HHHHHHHHhhhhccCCCCCCCCcccccCCCCcchhhHHHHHhhhHHHHHHHHHhhHHHHHHHhhhHHHHHHHHHHHHHHH
Q 001810 233 RLQVAIESLQDVKQEDDYPEGSTEDDAKSDGKEEDGLLLAAENDIKECQANLANCETELRRLQSKKEELQKEVDRLNEVA 312 (1010)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~l~~~~~~l~~~~~~~~~lq~~~~~l~~~~ 312 (1010)
|.+.+.+.+..+.......+.....- +-+.....+..+-+..-..|..| .++.+....|++++..|-+.
T Consensus 340 ~i~~~~k~i~~~q~el~~~~~~e~~~---------~~~~ei~~~~~~~~~~~~~~~~~--~id~~~~~~~~~~~l~~~kr 408 (1072)
T KOG0979|consen 340 RIEKAKKMILDAQAELQETEDPENPV---------EEDQEIMKEVLQKKSSKLRDSRQ--EIDAEQLKSQKLRDLENKKR 408 (1072)
T ss_pred HHHHHHHHHHHHHhhhhhcCCccccc---------hhHHHHHHHHHHHHhhhhhhhhh--hhhHHHHHHHHHHHHHHHHH
Confidence 56666666666554443333322111 11112222222222222233322 34566677788888888777
Q ss_pred HHHHHHH
Q 001810 313 EKAQMNA 319 (1010)
Q Consensus 313 ~~a~~~a 319 (1010)
+.-+++-
T Consensus 409 ~~~~~~~ 415 (1072)
T KOG0979|consen 409 KLKQNSD 415 (1072)
T ss_pred HHHHHhh
Confidence 7665543
No 364
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=29.03 E-value=7.5e+02 Score=26.83 Aligned_cols=24 Identities=33% Similarity=0.350 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Q 001810 155 ELLMNAMKELEVAQLNSTMFEEKAQRISEAA 185 (1010)
Q Consensus 155 ~~l~~a~~~le~a~~~~~~~e~~~~~~~~~a 185 (1010)
+++....++|+.|| .+||+|-+.|
T Consensus 105 ~~~~~ye~~L~~Ar-------~eA~~Ii~~A 128 (204)
T PRK09174 105 AAVAAYEQELAQAR-------AKAHSIAQAA 128 (204)
T ss_pred HHHHHHHHHHHHHH-------HHHHHHHHHH
Confidence 34444444444444 5566665554
No 365
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=28.94 E-value=8.1e+02 Score=26.95 Aligned_cols=19 Identities=16% Similarity=0.319 Sum_probs=7.2
Q ss_pred hhhHHHHHHHHHhhHHHHH
Q 001810 274 ENDIKECQANLANCETELR 292 (1010)
Q Consensus 274 ~~~~~~~~~~l~~~~~~l~ 292 (1010)
++.+.+-+..+......|.
T Consensus 90 r~~l~~~~~~l~~~~~~l~ 108 (302)
T PF10186_consen 90 RERLEELRESLEQRRSRLS 108 (302)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 366
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=28.91 E-value=1.5e+02 Score=26.60 Aligned_cols=44 Identities=23% Similarity=0.408 Sum_probs=33.0
Q ss_pred chhhHHHHHhhhHHHHHHHHHhhHHHHHHHh-hhHHHHHHHHHHH
Q 001810 265 EEDGLLLAAENDIKECQANLANCETELRRLQ-SKKEELQKEVDRL 308 (1010)
Q Consensus 265 ~~~~~~~~a~~~~~~~~~~l~~~~~~l~~~~-~~~~~lq~~~~~l 308 (1010)
+...++-.++.++.+|+..|..||.|++.+. +.+..++.++...
T Consensus 22 ~r~~~i~~~e~~l~ea~~~l~qMe~E~~~~p~s~r~~~~~kl~~y 66 (79)
T PF05008_consen 22 QRKSLIREIERDLDEAEELLKQMELEVRSLPPSERNQYKSKLRSY 66 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCTS-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 5668889999999999999999999988775 4445555544433
No 367
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=28.88 E-value=9.3e+02 Score=27.63 Aligned_cols=97 Identities=12% Similarity=0.146 Sum_probs=58.0
Q ss_pred CCCcHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhchhHHHHHHHhhhHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 001810 147 PPTTDELRELLMNAMKELEVAQLNSTMFEEKAQRISEAAIALKDEAANAWNNVNVTLDMVHEIVNEECIAKEAVHKATMA 226 (1010)
Q Consensus 147 ~~~~~~l~~~l~~a~~~le~a~~~~~~~e~~~~~~~~~ai~~~d~~~~~~~~~~~~~~~~~~~~~~e~~a~~~~~~~~~~ 226 (1010)
---+|-|.-.|||.+..-|..+.+.+.+..+-|.++|..=++.-.-++--.|.-.-=..|.-.=-.=.-+|..+.+-+--
T Consensus 38 QfQleSlEAaLqKQKqK~e~ek~e~s~LkREnq~l~e~c~~lek~rqKlshdlq~Ke~qv~~lEgQl~s~Kkqie~Leqe 117 (307)
T PF10481_consen 38 QFQLESLEAALQKQKQKVEEEKNEYSALKRENQSLMESCENLEKTRQKLSHDLQVKESQVNFLEGQLNSCKKQIEKLEQE 117 (307)
T ss_pred HHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34488999999999999999999999999999999998765543322222221100000000001112345555555555
Q ss_pred HHHHHHHHHHHHHHhhh
Q 001810 227 LSLAEARLQVAIESLQD 243 (1010)
Q Consensus 227 ~~~a~~~~~~~~~~~~~ 243 (1010)
+..-+..|+....+...
T Consensus 118 lkr~KsELErsQ~~~~~ 134 (307)
T PF10481_consen 118 LKRCKSELERSQQAASS 134 (307)
T ss_pred HHHHHHHHHHHHHhhcc
Confidence 55555555555555543
No 368
>TIGR03794 NHPM_micro_HlyD NHPM bacteriocin system secretion protein. Members of this protein family are homologs of the HlyD membrane fusion protein of type I secretion systems. Their occurrence in prokaryotic genomes is associated with the occurrence of a novel class of microcin (small bacteriocins) with a propeptide region related to nitrile hydratase. We designate the class of bacteriocin as Nitrile Hydratase Propeptide Microcin, or NHPM. This family, therefore, is designated as NHPM bacteriocin system secretion protein. Some but not all NHPM-class putative microcins belong to the TOMM (thiazole/oxazole modified microcin) class as assessed by the presence of the scaffolding protein and/or cyclodehydratase in the same gene clusters.
Probab=28.85 E-value=1e+03 Score=28.11 Aligned_cols=15 Identities=20% Similarity=0.162 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHhhhh
Q 001810 157 LMNAMKELEVAQLNS 171 (1010)
Q Consensus 157 l~~a~~~le~a~~~~ 171 (1010)
++.+..+++.++.+.
T Consensus 98 ~~~~~~~l~~~~~q~ 112 (421)
T TIGR03794 98 LQESYQKLTQLQEQL 112 (421)
T ss_pred HHHHHHHHHHHHHHH
Confidence 444444444444333
No 369
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=28.73 E-value=1.4e+03 Score=29.56 Aligned_cols=26 Identities=12% Similarity=0.146 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHH
Q 001810 152 ELRELLMNAMKELEVAQLNSTMFEEK 177 (1010)
Q Consensus 152 ~l~~~l~~a~~~le~a~~~~~~~e~~ 177 (1010)
.|..=+.|=+.||...|-+-.-+.-+
T Consensus 422 rLE~dvkkLraeLq~~Rq~E~ELRsq 447 (697)
T PF09726_consen 422 RLEADVKKLRAELQSSRQSEQELRSQ 447 (697)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 34444455555555555544444433
No 370
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=28.72 E-value=1e+02 Score=30.02 Aligned_cols=35 Identities=20% Similarity=0.333 Sum_probs=22.7
Q ss_pred hHHHHHHHHHhhHHHHHHHhhhHHHHHHHHHHHHH
Q 001810 276 DIKECQANLANCETELRRLQSKKEELQKEVDRLNE 310 (1010)
Q Consensus 276 ~~~~~~~~l~~~~~~l~~~~~~~~~lq~~~~~l~~ 310 (1010)
...+-+..++.-+.|+.+++.+-++|+.||++|+.
T Consensus 28 ~~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~ 62 (105)
T PRK00888 28 DYWRVNDQVAAQQQTNAKLKARNDQLFAEIDDLKG 62 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 34555566666666677777777777777766654
No 371
>COG3748 Predicted membrane protein [Function unknown]
Probab=28.69 E-value=3.1e+02 Score=32.00 Aligned_cols=38 Identities=11% Similarity=-0.005 Sum_probs=22.8
Q ss_pred HHHHHHHHHHhhcccChhhhhh-hhhhHHHHHHHHHHHH
Q 001810 875 GLLLGLFFMTVGMSIDPKLLLS-NFPVITGALGLLIGGK 912 (1010)
Q Consensus 875 ~~f~PLFFVlIGl~Ldl~~L~~-~~~~iilillvvil~K 912 (1010)
.+-+|+.|+++.-+.++..-.. +|....++++..+..|
T Consensus 227 ylTLPVlF~MlSNHyp~~~gt~fnWii~alv~l~gV~IR 265 (407)
T COG3748 227 YLTLPVLFTMLSNHYPLAFGTQFNWIIAALVFLMGVLIR 265 (407)
T ss_pred eehHHHHHHHHhccCcccccCchhHHHHHHHHHHHHHHH
Confidence 4779999999988776543222 3544444444444444
No 372
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=28.58 E-value=1.3e+02 Score=30.12 Aligned_cols=46 Identities=15% Similarity=0.238 Sum_probs=36.5
Q ss_pred HHhhhHHHHHHHHHhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Q 001810 272 AAENDIKECQANLANCETELRRLQSKKEELQKEVDRLNEVAEKAQM 317 (1010)
Q Consensus 272 ~a~~~~~~~~~~l~~~~~~l~~~~~~~~~lq~~~~~l~~~~~~a~~ 317 (1010)
.-.+-++.++.++.+++..++.++....+++++.+.+....+..+-
T Consensus 91 ~~~eA~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~ 136 (140)
T PRK03947 91 DLDEAIEILDKRKEELEKALEKLEEALQKLASRIAQLAQELQQLQQ 136 (140)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666777888889999999999999999988888877766543
No 373
>PF08287 DASH_Spc19: Spc19; InterPro: IPR013251 Spc19 is a component of the DASH complex. The DASH complex associates with the spindle pole body and is important for spindle and kinetochore integrity during cell division [, ].
Probab=28.49 E-value=1.7e+02 Score=30.39 Aligned_cols=22 Identities=41% Similarity=0.533 Sum_probs=19.8
Q ss_pred hHHHHHHHhhhHHHHHHHHHHH
Q 001810 287 CETELRRLQSKKEELQKEVDRL 308 (1010)
Q Consensus 287 ~~~~l~~~~~~~~~lq~~~~~l 308 (1010)
=..+|+.|+.||+.||..|.||
T Consensus 132 ~~~~Lk~L~~kKerL~y~verL 153 (153)
T PF08287_consen 132 ELERLKALRQKKERLKYSVERL 153 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHHhC
Confidence 3579999999999999999986
No 374
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=28.32 E-value=4.4e+02 Score=29.10 Aligned_cols=75 Identities=25% Similarity=0.283 Sum_probs=46.4
Q ss_pred hHHHHHhhhHHHHHHHHHhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhh
Q 001810 268 GLLLAAENDIKECQANLANCETELRRLQSKKEELQKEVDRLNEVAEKAQMNALKAEEDVANIMLLAEQAVAFEIEATQ 345 (1010)
Q Consensus 268 ~~~~~a~~~~~~~~~~l~~~~~~l~~~~~~~~~lq~~~~~l~~~~~~a~~~a~~a~~~~~~~m~~ae~av~~e~ea~~ 345 (1010)
..+..++.+..+....++.-=++=++++.+..++|..+.++.+.|+.|- .+.+|+.|+--+-..|-+-...++.+
T Consensus 31 Q~ird~~~~l~~ar~~~A~~~a~~k~~e~~~~~~~~~~~k~e~~A~~Al---~~g~E~LAr~al~~~~~le~~~~~~~ 105 (225)
T COG1842 31 QAIRDMESELAKARQALAQAIARQKQLERKLEEAQARAEKLEEKAELAL---QAGNEDLAREALEEKQSLEDLAKALE 105 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555566666666666666666666666666777777766666655543 45567777766655555555555443
No 375
>PRK10577 iron-hydroxamate transporter permease subunit; Provisional
Probab=28.31 E-value=1.4e+03 Score=29.32 Aligned_cols=23 Identities=17% Similarity=0.192 Sum_probs=18.9
Q ss_pred HHHhcCCCchHHHHHHHHHhhccc
Q 001810 619 IFQKIPGGSPVLGYLAAGILIGPY 642 (1010)
Q Consensus 619 Ll~Rl~gLP~vVG~ILaGILLGP~ 642 (1010)
++..+ |+|+++.-+++|..++-.
T Consensus 392 i~~~~-RlPR~l~a~l~G~~La~s 414 (668)
T PRK10577 392 ALLPL-RLPRLLAALLAGAMLAVA 414 (668)
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHH
Confidence 45566 889999999999999943
No 376
>PRK05759 F0F1 ATP synthase subunit B; Validated
Probab=28.02 E-value=5.9e+02 Score=25.68 Aligned_cols=80 Identities=16% Similarity=0.185 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHhhHHHHHHHhhhHHHHHHHHHHHHHHHHH-----HHHHHhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 001810 274 ENDIKECQANLANCETELRRLQSKKEELQKEVDRLNEVAEK-----AQMNALKAEEDVANIMLLAEQAVAFEIEATQRVN 348 (1010)
Q Consensus 274 ~~~~~~~~~~l~~~~~~l~~~~~~~~~lq~~~~~l~~~~~~-----a~~~a~~a~~~~~~~m~~ae~av~~e~ea~~~~~ 348 (1010)
+.++.+.+....+-+..+...+.+..+.++|...+-+-|.. .+-.-.+|++++..++.-|++.++.|-+.+..--
T Consensus 41 ~~~l~~a~~~~~~a~~~~~e~~~~l~~a~~ea~~i~~~a~~ea~~~~~~~~~~a~~ea~~~~~~a~~~i~~e~~~a~~~l 120 (156)
T PRK05759 41 ADGLAAAERAKKELELAQAKYEAQLAEARAEAAEIIEQAKKRAAQIIEEAKAEAEAEAARIKAQAQAEIEQERKRAREEL 120 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred cHHHH
Q 001810 349 DAEIA 353 (1010)
Q Consensus 349 ~~e~~ 353 (1010)
..+++
T Consensus 121 ~~~~~ 125 (156)
T PRK05759 121 RKQVA 125 (156)
T ss_pred HHHHH
No 377
>COG3371 Predicted membrane protein [Function unknown]
Probab=28.01 E-value=5.7e+02 Score=27.53 Aligned_cols=57 Identities=12% Similarity=0.089 Sum_probs=38.6
Q ss_pred CCchHHHHHHHHHhhcccccccccCchhHHHHHHHHHHHHHHHHhhcCChhHHHhchhh
Q 001810 625 GGSPVLGYLAAGILIGPYGLSIIRHVHGTKAIAEFGVVFLLFNIGLELSVERLSSMKKY 683 (1010)
Q Consensus 625 gLP~vVG~ILaGILLGP~gLglI~~~~~le~LaeLGLi~LLF~aGLEidl~~Lrr~~k~ 683 (1010)
+-+.-..+++.|+.+.- .|..|.....+.+..+...+++|.+.+-+.....+++++.
T Consensus 75 ~~~g~~ll~is~lfLaL--VGVFpEgt~pH~~vs~~ffll~fi~~~i~si~~~~~~~~~ 131 (181)
T COG3371 75 ENYGGALLIISGLFLAL--VGVFPEGTPPHVFVSILFFLLSFIAMLIYSIGRLLRNRSG 131 (181)
T ss_pred hhcchHHHHHHHHHHHh--eeeCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 44445567777777764 3455555556677777788888888888888877765443
No 378
>KOG1965 consensus Sodium/hydrogen exchanger protein [Inorganic ion transport and metabolism]
Probab=27.69 E-value=2.5e+02 Score=34.98 Aligned_cols=68 Identities=16% Similarity=0.136 Sum_probs=35.9
Q ss_pred HHHHHHHHHhhcccChhhhhhhhhhHHHHHHH---------HHHHHHHHHHHHHHhhCCChHHHHHHHHHHhhHHHHHH
Q 001810 876 LLLGLFFMTVGMSIDPKLLLSNFPVITGALGL---------LIGGKTILVALVGRLFGVSVISAIRTGLLLAPGGEFAF 945 (1010)
Q Consensus 876 ~f~PLFFVlIGl~Ldl~~L~~~~~~iilillv---------vil~K~l~v~l~~~~~gl~~real~IGl~LaprG~vaL 945 (1010)
+++|..-.-.|.+++-+.++.+++-+....+. ...+++.+. .....+++++|.+.+|..++.--.++.
T Consensus 104 vLLPpiif~sgy~l~k~~fF~n~~si~~fa~~Gt~IS~~~ig~gv~~~~~--~~~~~~~~f~d~L~fGaliSATDPVtv 180 (575)
T KOG1965|consen 104 VLLPPIIFNSGYSLKKKQFFRNIGSILLFAIFGTFISAVIIGAGVYLLGF--GLLIYDLSFKDCLAFGALISATDPVTV 180 (575)
T ss_pred HhhchhhhcccceechhhhhhhhHHHHHhhhcceeeehhHHhhHHHHHhc--ccccccccHHHHHHHhhHhcccCchHH
Confidence 44444444568888877776654332221111 111111111 223357899999999987665444443
No 379
>PRK13022 secF preprotein translocase subunit SecF; Reviewed
Probab=27.64 E-value=9.5e+02 Score=27.32 Aligned_cols=26 Identities=8% Similarity=0.073 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001810 793 AAVAITAIIAGGRLLLRPIYKQIAEN 818 (1010)
Q Consensus 793 vilgiii~llvg~~llr~llr~i~~~ 818 (1010)
.++|++.+.+...++.++++.++.++
T Consensus 260 l~~Gli~~~~~sl~i~p~l~~~~~~~ 285 (289)
T PRK13022 260 LLIGIIVGTYSSIFVASPLLLWLGVR 285 (289)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34455555556666677776666543
No 380
>TIGR00771 DcuC c4-dicarboxylate anaerobic carrier family protein. catalyzing fumarate-succinate exchange and fumarate uptake.
Probab=27.54 E-value=4.8e+02 Score=30.94 Aligned_cols=59 Identities=20% Similarity=0.247 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHhhcccccccccCchhHHHHHHHHHHHHHHHHhhcCC
Q 001810 601 ASLFDVLWLLLASVIFVPIFQKIPGGSPVLGYLAAGILIGPYGLSIIRHVHGTKAIAEFGVVFLLFNIGLELS 673 (1010)
Q Consensus 601 ~~Ll~illLLl~A~ilg~Ll~Rl~gLP~vVG~ILaGILLGP~gLglI~~~~~le~LaeLGLi~LLF~aGLEid 673 (1010)
.....+..+++++.++++++... |+|.-+...+.++-.+|. +.-+.+.+++|..|+=+|
T Consensus 255 ~~~~~v~~iI~aA~vF~~~L~~~-Gi~~~l~~~l~~~~~~~~-------------~~ll~~~l~~~~lg~~~~ 313 (388)
T TIGR00771 255 NSFANVVGLIVAASVFAAGLKTI-GAVDAAISFAKESGLGNI-------------FVMWGATIGPFLMALITG 313 (388)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHc-CHHHHHHHHHHHcCCCHH-------------HHHHHHHHHHHHHHHHhc
Confidence 33455678889999999999999 999988888888755442 222455556666777664
No 381
>PRK15030 multidrug efflux system transporter AcrA; Provisional
Probab=27.54 E-value=1.9e+02 Score=33.99 Aligned_cols=13 Identities=15% Similarity=0.135 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHH
Q 001810 225 MALSLAEARLQVA 237 (1010)
Q Consensus 225 ~~~~~a~~~~~~~ 237 (1010)
..+.+|+..+++.
T Consensus 117 a~l~~a~~~~~R~ 129 (397)
T PRK15030 117 AAANIAQLTVNRY 129 (397)
T ss_pred HHHHHHHHHHHHH
Confidence 3344455544444
No 382
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=27.48 E-value=1.7e+02 Score=32.26 Aligned_cols=55 Identities=33% Similarity=0.340 Sum_probs=39.1
Q ss_pred HhhhHHHHHHHHHhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 001810 273 AENDIKECQANLANCETELRRLQSKKEELQKEVDRLNEVAEKAQMNALKAEEDVA 327 (1010)
Q Consensus 273 a~~~~~~~~~~l~~~~~~l~~~~~~~~~lq~~~~~l~~~~~~a~~~a~~a~~~~~ 327 (1010)
-.++...-.+.+...++||+..+.+.+.+|++++-|.-.+|.-+..=...=||-+
T Consensus 149 ~~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~ 203 (216)
T KOG1962|consen 149 LEEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYS 203 (216)
T ss_pred hhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 4555666677788888888888888888888888887777766655554444443
No 383
>COG0711 AtpF F0F1-type ATP synthase, subunit b [Energy production and conversion]
Probab=27.41 E-value=6.7e+02 Score=26.03 Aligned_cols=72 Identities=32% Similarity=0.306 Sum_probs=46.1
Q ss_pred hHHHHHhhhHHHHHHHHHhhHHHHHHHhhhHHHHHHHHHHHHHHHHH-HHHHHhhhHHHHHHHHHHHHHHHHHHHH
Q 001810 268 GLLLAAENDIKECQANLANCETELRRLQSKKEELQKEVDRLNEVAEK-AQMNALKAEEDVANIMLLAEQAVAFEIE 342 (1010)
Q Consensus 268 ~~~~~a~~~~~~~~~~l~~~~~~l~~~~~~~~~lq~~~~~l~~~~~~-a~~~a~~a~~~~~~~m~~ae~av~~e~e 342 (1010)
+.+..|+..-.+.++.+.+-+.+|...+ .+-|.=++.-++.|++ ++-.-.+||+++.++...|++=..-|-+
T Consensus 44 ~~l~~A~~~~~ea~~~~~~~~~~l~~Ar---~~a~~Ii~~A~~~a~~~~~e~~~~a~~e~~r~~~~a~~~I~~e~~ 116 (161)
T COG0711 44 DDLAEAERLKEEAQALLAEYEQELEEAR---EQASEIIEQAKKEAEQIAEEIKAEAEEELERIKEAAEAEIEAEKE 116 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666677777777777766554 4555555555555544 3444567888888888888876666554
No 384
>PF06826 Asp-Al_Ex: Predicted Permease Membrane Region; InterPro: IPR006512 These sequences contain a domain that is duplicated in HI0035 of Haemophilus influenzae, in YidE and YbjL of Escherichia coli, and in a number of other putative transporters. Member proteins may have 0, 1, or 2 copies of the TrkA-C potassium uptake domain (IPR006037 from INTERPRO) between the duplications. The duplication appears distantly related to both the N- and the C-terminal domains the sodium/hydrogen exchanger family domain (IPR006153 from INTERPRO). The domain contains several apparent transmembrane regions and is proposed here to act in transport.
Probab=27.37 E-value=6e+02 Score=26.81 Aligned_cols=89 Identities=24% Similarity=0.233 Sum_probs=47.7
Q ss_pred hchhHHHHHHHHHHHcCCCchhH--HHHHHH-HhHHHHHHHHHHHHhhcccChhh---hhhhhhhHHHHHHHHHHHHHHH
Q 001810 842 AGLSMALGAFLAGLLLAETEFSL--QVESDI-APYRGLLLGLFFMTVGMSIDPKL---LLSNFPVITGALGLLIGGKTIL 915 (1010)
Q Consensus 842 lGlSgvLGAFiAGLiLs~~~~~~--~L~e~l-~~i~~~f~PLFFVlIGl~Ldl~~---L~~~~~~iilillvvil~K~l~ 915 (1010)
+.+...-|+++.|+++++...+. .+.... ..++++.+.+|...+|++.-..- +....+...++.+++.+.-.+.
T Consensus 21 ~~LG~a~G~L~vgL~~G~~~~~~~~~~~~~~~~~l~~~GL~lFl~~VGl~aG~~F~~~l~~~G~~~~~~~~~i~~~~~~~ 100 (169)
T PF06826_consen 21 FSLGAAGGVLFVGLILGALGRTGPIFLPISAPSFLRQLGLALFLAAVGLSAGPGFFSSLKRGGLKLLLLGVIITLVPLLI 100 (169)
T ss_pred eeccccHHHHHHHHHHHHhhhccCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 34444556777777777642110 022222 23467888999999999886443 3322222223333333444444
Q ss_pred HHHHHH-hhCCChHHH
Q 001810 916 VALVGR-LFGVSVISA 930 (1010)
Q Consensus 916 v~l~~~-~~gl~~rea 930 (1010)
++..++ ++++++-..
T Consensus 101 ~~~~~~~~~~l~~~~~ 116 (169)
T PF06826_consen 101 ALVIGRYLFKLNPGIA 116 (169)
T ss_pred HHHHHHHHcCCCHHHH
Confidence 555555 888876543
No 385
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=27.35 E-value=9.4e+02 Score=29.21 Aligned_cols=95 Identities=20% Similarity=0.122 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHHHhhhhccCCCCCCCCcccccCCCCcchhhHHHHHhhhHHHHHHHHHhhHHHHHHHhhhHHHHHHHHH
Q 001810 227 LSLAEARLQVAIESLQDVKQEDDYPEGSTEDDAKSDGKEEDGLLLAAENDIKECQANLANCETELRRLQSKKEELQKEVD 306 (1010)
Q Consensus 227 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~l~~~~~~l~~~~~~~~~lq~~~~ 306 (1010)
.+.-+.|.|.-.+.....|....-.- |.-..-+.+...-.+-|+++...+++-|.+--.+...|||.|..|++-|.=+.
T Consensus 299 ~Enlqmr~qqleeentelRs~~arlk-sl~dklaee~qr~sd~LE~lrlql~~eq~l~~rm~d~Lrrfq~ekeatqELie 377 (502)
T KOG0982|consen 299 KENLQMRDQQLEEENTELRSLIARLK-SLADKLAEEDQRSSDLLEALRLQLICEQKLRVRMNDILRRFQEEKEATQELIE 377 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 44556666665555555442221111 21111111222234567788888888888888888888888888888777776
Q ss_pred HHHHHHHHHHHHHhhh
Q 001810 307 RLNEVAEKAQMNALKA 322 (1010)
Q Consensus 307 ~l~~~~~~a~~~a~~a 322 (1010)
.|---.+.+|+-.+-+
T Consensus 378 elrkelehlr~~kl~~ 393 (502)
T KOG0982|consen 378 ELRKELEHLRRRKLVL 393 (502)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 6666666666654433
No 386
>COG3879 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.17 E-value=1.9e+02 Score=32.43 Aligned_cols=31 Identities=32% Similarity=0.433 Sum_probs=25.0
Q ss_pred hhHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 001810 286 NCETELRRLQSKKEELQKEVDRLNEVAEKAQ 316 (1010)
Q Consensus 286 ~~~~~l~~~~~~~~~lq~~~~~l~~~~~~a~ 316 (1010)
....|++++|.+...||.||..++.+..+.+
T Consensus 54 ~L~~e~~s~Q~~~~~L~~ev~~~~~~~~s~~ 84 (247)
T COG3879 54 DLVKELRSLQKKVNTLAAEVEDLENKLDSVR 84 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5567888899999999999988888766555
No 387
>PRK08475 F0F1 ATP synthase subunit B; Validated
Probab=27.14 E-value=5.7e+02 Score=26.67 Aligned_cols=26 Identities=19% Similarity=0.425 Sum_probs=19.5
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHh
Q 001810 319 ALKAEEDVANIMLLAEQAVAFEIEAT 344 (1010)
Q Consensus 319 a~~a~~~~~~~m~~ae~av~~e~ea~ 344 (1010)
-.+|++++.+++.-|+..+..|=+.+
T Consensus 109 i~~A~~ea~~~~~~a~~~ie~Ek~~a 134 (167)
T PRK08475 109 EKQTKDDIENLIKSFEELMEFEVRKM 134 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34678888899988888887775543
No 388
>PHA02047 phage lambda Rz1-like protein
Probab=27.05 E-value=1.8e+02 Score=28.16 Aligned_cols=30 Identities=17% Similarity=0.260 Sum_probs=22.6
Q ss_pred HhhHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 001810 285 ANCETELRRLQSKKEELQKEVDRLNEVAEK 314 (1010)
Q Consensus 285 ~~~~~~l~~~~~~~~~lq~~~~~l~~~~~~ 314 (1010)
.+.+++|+.++-+..-+|+-|+.|+.++++
T Consensus 37 ~~la~qLE~a~~r~~~~Q~~V~~l~~kae~ 66 (101)
T PHA02047 37 KRQTARLEALEVRYATLQRHVQAVEARTNT 66 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567777778888888999999888544
No 389
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=26.92 E-value=1.4e+03 Score=29.16 Aligned_cols=23 Identities=22% Similarity=0.228 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhh
Q 001810 221 HKATMALSLAEARLQVAIESLQD 243 (1010)
Q Consensus 221 ~~~~~~~~~a~~~~~~~~~~~~~ 243 (1010)
..|++..--|++|++...+.++.
T Consensus 247 ~~a~~~~~~a~a~~~~l~~~l~~ 269 (754)
T TIGR01005 247 SRARANRAAAEGTADSVKKALQN 269 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 33455556677777777666654
No 390
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=26.80 E-value=1.7e+03 Score=30.00 Aligned_cols=27 Identities=11% Similarity=0.199 Sum_probs=10.5
Q ss_pred HHHHHhhHHHHHHHhhhHHHHHHHHHH
Q 001810 281 QANLANCETELRRLQSKKEELQKEVDR 307 (1010)
Q Consensus 281 ~~~l~~~~~~l~~~~~~~~~lq~~~~~ 307 (1010)
+..+.+.+.+++.+.....+++++..+
T Consensus 723 ~~~~~~~~~~l~~~~~~~~~~~~~~~~ 749 (1047)
T PRK10246 723 HEQCLSLHSQLQTLQQQDVLEAQRLQK 749 (1047)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333444433333333333333
No 391
>PRK15396 murein lipoprotein; Provisional
Probab=26.65 E-value=2.5e+02 Score=26.21 Aligned_cols=44 Identities=18% Similarity=0.365 Sum_probs=30.7
Q ss_pred hhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 001810 286 NCETELRRLQSKKEELQKEVDRLNEVAEKAQMNALKAEEDVANI 329 (1010)
Q Consensus 286 ~~~~~l~~~~~~~~~lq~~~~~l~~~~~~a~~~a~~a~~~~~~~ 329 (1010)
+...+...|+.+.+.++.+++.+..-++.|+..|..|-+-.=|+
T Consensus 29 ~LssqV~~L~~kvdql~~dv~~~~~~~~~a~~eA~raN~RlDn~ 72 (78)
T PRK15396 29 QLSSDVQTLNAKVDQLSNDVNAMRSDVQAAKDDAARANQRLDNQ 72 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44456777777777777777777777777777777766655554
No 392
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=26.65 E-value=1.4e+03 Score=29.25 Aligned_cols=88 Identities=19% Similarity=0.286 Sum_probs=55.8
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhchhHHHHHHHhhhHhHHHHHHHHHHHHHHHHHHHH--H
Q 001810 146 EPPTTDELRELLMNAMKELEVAQLNSTMFEEKAQRISEAAIALKDEAANAWNNVNVTLDMVHEIVNEECIAKEAVHK--A 223 (1010)
Q Consensus 146 ~~~~~~~l~~~l~~a~~~le~a~~~~~~~e~~~~~~~~~ai~~~d~~~~~~~~~~~~~~~~~~~~~~e~~a~~~~~~--~ 223 (1010)
+.++-+++.|-|.|-.+.-|--++-=.|+-|.+..=.|.-+-|.---+.-++++|+|=.+.|+ |..-...... -
T Consensus 102 s~~~~~~yQerLaRLe~dkesL~LQvsvLteqVeaQgEKIrDLE~cie~kr~kLnatEEmLQq----ellsrtsLETqKl 177 (861)
T KOG1899|consen 102 SCPEYPEYQERLARLEMDKESLQLQVSVLTEQVEAQGEKIRDLETCIEEKRNKLNATEEMLQQ----ELLSRTSLETQKL 177 (861)
T ss_pred cCCcchHHHHHHHHHhcchhhheehHHHHHHHHHHhhhhHHHHHHHHHHHHhhhchHHHHHHH----HHHhhhhHHHHHh
Confidence 467788888888887777776666666776665555555566666666668889988777765 3333333333 3
Q ss_pred HHHHHHHHHHHHHH
Q 001810 224 TMALSLAEARLQVA 237 (1010)
Q Consensus 224 ~~~~~~a~~~~~~~ 237 (1010)
-.+-+.-|.+|..+
T Consensus 178 DLmaevSeLKLklt 191 (861)
T KOG1899|consen 178 DLMAEVSELKLKLT 191 (861)
T ss_pred HHHHHHHHhHHHHH
Confidence 33335556666554
No 393
>PF15233 SYCE1: Synaptonemal complex central element protein 1
Probab=26.42 E-value=1.5e+02 Score=30.15 Aligned_cols=40 Identities=35% Similarity=0.318 Sum_probs=35.1
Q ss_pred HHHhhhHHHHHHHHHhhHHHHHHHhhhHHHHHHHHHHHHH
Q 001810 271 LAAENDIKECQANLANCETELRRLQSKKEELQKEVDRLNE 310 (1010)
Q Consensus 271 ~~a~~~~~~~~~~l~~~~~~l~~~~~~~~~lq~~~~~l~~ 310 (1010)
+.-...|.+.|.+--.-.+||...|...+.||+|.|.||.
T Consensus 9 E~LInrInelQQaKKk~~EELgEa~~l~eaL~~ELDsL~~ 48 (134)
T PF15233_consen 9 EDLINRINELQQAKKKSSEELGEAQALWEALQRELDSLNG 48 (134)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4456788999998888889999999999999999999984
No 394
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=26.30 E-value=6.6e+02 Score=32.16 Aligned_cols=34 Identities=15% Similarity=0.362 Sum_probs=22.4
Q ss_pred chhhhhccccCccccccchhcccccchhHHHHHhcchhh
Q 001810 545 QAERSSLQLQQPDVITTSIEEASSNAKPLIREVKKLPKR 583 (1010)
Q Consensus 545 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~v~~~~~~~~~ 583 (1010)
|+.-.+-.+|+ .++.+|++|+.|+++++..+...
T Consensus 619 rRlqaaE~R~e-----el~q~v~~TTrPLlRQIE~lQ~t 652 (961)
T KOG4673|consen 619 RRLQAAERRCE-----ELIQQVPETTRPLLRQIEALQET 652 (961)
T ss_pred HHHHHHHHHHH-----HHHhhccccccHHHHHHHHHHHH
Confidence 33445555663 46788999999999986444333
No 395
>TIGR03794 NHPM_micro_HlyD NHPM bacteriocin system secretion protein. Members of this protein family are homologs of the HlyD membrane fusion protein of type I secretion systems. Their occurrence in prokaryotic genomes is associated with the occurrence of a novel class of microcin (small bacteriocins) with a propeptide region related to nitrile hydratase. We designate the class of bacteriocin as Nitrile Hydratase Propeptide Microcin, or NHPM. This family, therefore, is designated as NHPM bacteriocin system secretion protein. Some but not all NHPM-class putative microcins belong to the TOMM (thiazole/oxazole modified microcin) class as assessed by the presence of the scaffolding protein and/or cyclodehydratase in the same gene clusters.
Probab=26.29 E-value=8.9e+02 Score=28.62 Aligned_cols=18 Identities=22% Similarity=0.488 Sum_probs=12.2
Q ss_pred hhcccHHHHHHHHHHhhc
Q 001810 345 QRVNDAEIALQRAEKSLS 362 (1010)
Q Consensus 345 ~~~~~~e~~l~~~~~~~~ 362 (1010)
..+++++-.+.+++..++
T Consensus 234 ~~l~~~~~~l~~~~~~l~ 251 (421)
T TIGR03794 234 ARIKEARYEIEELENKLN 251 (421)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 345666777777777775
No 396
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=26.08 E-value=7.5e+02 Score=25.78 Aligned_cols=41 Identities=29% Similarity=0.466 Sum_probs=28.5
Q ss_pred HHHhhhHHHHHHHHHhhHHHHHHHhhhHHHHHHHHHHHHHH
Q 001810 271 LAAENDIKECQANLANCETELRRLQSKKEELQKEVDRLNEV 311 (1010)
Q Consensus 271 ~~a~~~~~~~~~~l~~~~~~l~~~~~~~~~lq~~~~~l~~~ 311 (1010)
...+.|+.+.+..+...+.|+.+++.+..+++++...+++.
T Consensus 77 ~~~~~e~~~~~~~l~~l~~el~~l~~~~~~~~~~l~~~~~~ 117 (191)
T PF04156_consen 77 PRLQGELSELQQQLQQLQEELDQLQERIQELESELEKLKED 117 (191)
T ss_pred hhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556777777777777777777777777777777666543
No 397
>PRK01821 hypothetical protein; Provisional
Probab=25.75 E-value=7.2e+02 Score=25.36 Aligned_cols=30 Identities=23% Similarity=0.403 Sum_probs=17.3
Q ss_pred HHHHHHHhhccc--ChhhhhhhhhhHHHHHHH
Q 001810 878 LGLFFMTVGMSI--DPKLLLSNFPVITGALGL 907 (1010)
Q Consensus 878 ~PLFFVlIGl~L--dl~~L~~~~~~iilillv 907 (1010)
+++||+=.|..+ ..+.+..+|+.+++.+++
T Consensus 71 m~LfFVPa~VGim~~~~ll~~~~~~il~~ivv 102 (133)
T PRK01821 71 MALLFVPIGVGVMQYYDLLRAQFGPIVVSCIV 102 (133)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 688888777654 455555555544443333
No 398
>PF09930 DUF2162: Predicted transporter (DUF2162); InterPro: IPR017199 This group represents a predicted membrane transporter, MTH672 type.
Probab=25.59 E-value=9.5e+02 Score=26.62 Aligned_cols=94 Identities=15% Similarity=0.073 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHHHhhcCChhHHHhch---hhHHHHHHHHH--HHHHHHHHH-HHHHhcCC-ChHHHHHHhhhcccCcH
Q 001810 654 KAIAEFGVVFLLFNIGLELSVERLSSMK---KYVFGLGSAQV--LVTAVVVGL-VAHFVSGL-PGPASIVIGNGLALSST 726 (1010)
Q Consensus 654 e~LaeLGLi~LLF~aGLEidl~~Lrr~~---k~il~LAlv~v--llt~~~Vg~-la~~l~Gl-s~~~ALLLGaILSaTSp 726 (1010)
.....+.+.+++..+|..+-.++-++.+ ++....-.+++ .++++.++. ++.-..++ +|..+..+|.++..+.
T Consensus 67 g~~~h~imal~li~~Gi~ti~~W~~~~~~~s~~t~lal~~PCPvCl~Ai~~S~~l~a~~~~~s~~~ig~~~g~if~i~i- 145 (224)
T PF09930_consen 67 GMVIHLIMALLLIYAGIYTIKKWKKSGKDSSRRTFLALSLPCPVCLTAIFFSIMLLAPSIGLSGWEIGLVLGLIFFILI- 145 (224)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHcccCCCCcccchhhhhcCchHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHH-
Confidence 3444555666788888877655422211 12222222222 222222111 11223455 4777888888777665
Q ss_pred HHHHHHHHHcC-CCCChhhHHHH
Q 001810 727 AVVLQVLQERG-ESTSRHGRATF 748 (1010)
Q Consensus 727 AVvv~IL~elg-~l~s~vGrLlL 748 (1010)
-++..+++..+ .-|.-.|+..+
T Consensus 146 l~ss~i~r~~~~~~p~~LG~~Mi 168 (224)
T PF09930_consen 146 LLSSFIFRRLKKPYPIILGNFMI 168 (224)
T ss_pred HHHHHHHHHhcCCCchHHHHHHH
Confidence 33444555444 23334444444
No 399
>PF05875 Ceramidase: Ceramidase; InterPro: IPR008901 This entry consists of several ceramidases. Ceramidases are enzymes involved in regulating cellular levels of ceramides, sphingoid bases, and their phosphates.; GO: 0016811 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides, 0006672 ceramide metabolic process, 0016021 integral to membrane
Probab=25.54 E-value=4.2e+02 Score=29.35 Aligned_cols=25 Identities=24% Similarity=0.370 Sum_probs=19.0
Q ss_pred HHHHHHhhhhhhhccchhhhhcccc
Q 001810 530 LGFLLFGAGVAFYANQAERSSLQLQ 554 (1010)
Q Consensus 530 ~g~~~~~~g~~~~~~~~~~~~~~~~ 554 (1010)
+|++++|.|-++||-......|+..
T Consensus 61 ~~l~~VGiGS~~FHaTl~~~~ql~D 85 (262)
T PF05875_consen 61 LGLALVGIGSFLFHATLSYWTQLLD 85 (262)
T ss_pred HHHHHHHHhHHHHHhChhhhHHHhh
Confidence 5777999998999887776666543
No 400
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=25.50 E-value=5.5e+02 Score=24.78 Aligned_cols=43 Identities=19% Similarity=0.320 Sum_probs=25.7
Q ss_pred chhhHHHHHhhhHHHHHHHHHhhHHHHHHHhhhHHHHHHHHHH
Q 001810 265 EEDGLLLAAENDIKECQANLANCETELRRLQSKKEELQKEVDR 307 (1010)
Q Consensus 265 ~~~~~~~~a~~~~~~~~~~l~~~~~~l~~~~~~~~~lq~~~~~ 307 (1010)
.-++|..--++.+...+..+.+++.+++.++.+..+++.++.+
T Consensus 84 ~~~eA~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~l~~~l~~ 126 (129)
T cd00890 84 SLEEAIEFLKKRLETLEKQIEKLEKQLEKLQDQITELQEELQQ 126 (129)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455655556666666666666666666666666666655544
No 401
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=25.49 E-value=7.4e+02 Score=26.32 Aligned_cols=44 Identities=23% Similarity=0.337 Sum_probs=20.3
Q ss_pred hhHHHHHhhhHHHHHHHHHhhHHHHHHHhhhHHHHHHHHHHHHH
Q 001810 267 DGLLLAAENDIKECQANLANCETELRRLQSKKEELQKEVDRLNE 310 (1010)
Q Consensus 267 ~~~~~~a~~~~~~~~~~l~~~~~~l~~~~~~~~~lq~~~~~l~~ 310 (1010)
...+...+.++..-+..+...+.+|+..+.-.+-||.|...||-
T Consensus 115 ~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l 158 (194)
T PF08614_consen 115 ERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQL 158 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444444444444443
No 402
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=25.49 E-value=8.1e+02 Score=25.78 Aligned_cols=53 Identities=23% Similarity=0.303 Sum_probs=44.2
Q ss_pred hHHHHHhhhHHHHHHHHHhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHh
Q 001810 268 GLLLAAENDIKECQANLANCETELRRLQSKKEELQKEVDRLNEVAEKAQMNAL 320 (1010)
Q Consensus 268 ~~~~~a~~~~~~~~~~l~~~~~~l~~~~~~~~~lq~~~~~l~~~~~~a~~~a~ 320 (1010)
+.+-.|=+.-.+.|..|+-+.++-..|+.|-++|+....+|.+..++|+--..
T Consensus 77 ~dik~AYe~A~~lQ~~L~~~re~E~qLr~rRD~LErrl~~l~~tierAE~l~s 129 (159)
T PF05384_consen 77 EDIKEAYEEAHELQVRLAMLREREKQLRERRDELERRLRNLEETIERAENLVS 129 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455556667889999999999999999999999999999999998865443
No 403
>KOG2718 consensus Na+-bile acid cotransporter [Inorganic ion transport and metabolism]
Probab=25.40 E-value=5.4e+02 Score=30.62 Aligned_cols=106 Identities=15% Similarity=0.142 Sum_probs=54.2
Q ss_pred HHHHHHHHHHhhcCChhHHHhchhhHHHHHHHHHH---HHHHHHHHHHHHhcCCChHHHHHHhhhcccCcHHHHHHHHHH
Q 001810 659 FGVVFLLFNIGLELSVERLSSMKKYVFGLGSAQVL---VTAVVVGLVAHFVSGLPGPASIVIGNGLALSSTAVVLQVLQE 735 (1010)
Q Consensus 659 LGLi~LLF~aGLEidl~~Lrr~~k~il~LAlv~vl---lt~~~Vg~la~~l~Gls~~~ALLLGaILSaTSpAVvv~IL~e 735 (1010)
.|+.+.++..|...|++.+++..++...+++.-+. +-. ..++.....+.+|...+ ..+..++..+|+-.-..+..
T Consensus 117 ~gl~~~~ls~g~~~~~~~~~~~~~rP~~~~lG~v~q~~i~p-l~~f~~~~~~~lP~~~~-ag~~Lvtc~~p~g~~~~~~~ 194 (371)
T KOG2718|consen 117 PGLLSNMLSFGIKLDMDLFAGMIKRPTPLALGFVPQYLIMP-LLGFLLSKVLLLPAALA-AGLLLVTCVSPGGGGNYLTS 194 (371)
T ss_pred cHHHHHHHHHhcCccHHHHhhHhhCCcceeehHHHHHHHHH-HHHHhhhhHhhCCcccc-ceeEEEEeccCCcchhhhee
Confidence 67788899999999999999988876655443222 111 12222222233443332 34445555555544444443
Q ss_pred cCCCCChhhHHHHHHHHhHHHHHHHHHHHHHhh
Q 001810 736 RGESTSRHGRATFSVLLFQDLAVVVLLILIPLI 768 (1010)
Q Consensus 736 lg~l~s~vGrLlL~~SllnDi~aIVLfali~~l 768 (1010)
+. .+. .-.+......++-+.+++++-+...+
T Consensus 195 ~~-~~g-~v~lsilmT~~stv~avi~~pl~s~~ 225 (371)
T KOG2718|consen 195 KR-LPG-DVTLSILMTTISTVLAVILTPLLSIL 225 (371)
T ss_pred ec-CCc-chhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 22 112 12233334445555555555443333
No 404
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=25.12 E-value=1.6e+02 Score=35.78 Aligned_cols=69 Identities=17% Similarity=0.170 Sum_probs=33.5
Q ss_pred ccCCcccc-ccccccC-CCCccchhhHHHHHHHHHHhhchhHHHHHHHHhhhhhhhccchhhhhccccCccccccchhcc
Q 001810 489 KSSRFFPA-SFFSSAV-DGTESTQASIFQGLMEYARKQLPKLVLGFLLFGAGVAFYANQAERSSLQLQQPDVITTSIEEA 566 (1010)
Q Consensus 489 ~~~r~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 566 (1010)
++.-|.|+ ||+.-.. .|.+ .|++|.. +.+|.-|+ +=+.+- +.++|+...+ |.. --+++..--|+
T Consensus 209 ~~~~YiPsgSf~~avll~G~D-A~tg~~a-------q~nP~Pv~-lRi~~~--aiLPN~~~~d--l~g-C~v~gsa~GDL 274 (475)
T PRK13729 209 PSLPYIPSGSFAKAMLIEGAD-ANASVTG-------NESTVPMQ-LRITGL--VEMPNSKTYD--ATG-CFVGLEAWGDV 274 (475)
T ss_pred CcCceeCCCCeEEEEEecccc-cCccccc-------cCCCccEE-EEEccc--ccCCCCcccc--cCC-cEEEEEEEeec
Confidence 34456776 6665542 3444 6777632 55664432 113333 3677764222 221 13455555666
Q ss_pred cccch
Q 001810 567 SSNAK 571 (1010)
Q Consensus 567 ~s~~~ 571 (1010)
||.=.
T Consensus 275 SSER~ 279 (475)
T PRK13729 275 SSERA 279 (475)
T ss_pred cccee
Confidence 65543
No 405
>PRK14127 cell division protein GpsB; Provisional
Probab=25.07 E-value=2.1e+02 Score=28.22 Aligned_cols=35 Identities=26% Similarity=0.378 Sum_probs=15.9
Q ss_pred HHhhhHHHHHHHHHhhHHHHHHHhhhHHHHHHHHH
Q 001810 272 AAENDIKECQANLANCETELRRLQSKKEELQKEVD 306 (1010)
Q Consensus 272 ~a~~~~~~~~~~l~~~~~~l~~~~~~~~~lq~~~~ 306 (1010)
.-..|.........+.++|+++++.+.+++|..+.
T Consensus 34 ~V~~dye~l~~e~~~Lk~e~~~l~~~l~e~~~~~~ 68 (109)
T PRK14127 34 DVIKDYEAFQKEIEELQQENARLKAQVDELTKQVS 68 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 33334444444444444444444444444444444
No 406
>TIGR02473 flagell_FliJ flagellar export protein FliJ. Members of this family are the FliJ protein found, in nearly every case, in the midst of other flagellar biosynthesis genes in bacgterial genomes. Typically the fliJ gene is found adjacent to the gene for the flagellum-specific ATPase FliI. Sequence scoring in the gray zone between trusted and noise cutoffs include both probable FliJ proteins and components of bacterial type III secretion systems.
Probab=25.05 E-value=6.6e+02 Score=24.59 Aligned_cols=45 Identities=22% Similarity=0.296 Sum_probs=25.4
Q ss_pred HHHhhhHHHHHHHHHhhHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q 001810 271 LAAENDIKECQANLANCETELRRLQSKKEELQKEVDRLNEVAEKA 315 (1010)
Q Consensus 271 ~~a~~~~~~~~~~l~~~~~~l~~~~~~~~~lq~~~~~l~~~~~~a 315 (1010)
..-...|..-+..+..++.+++..+....+..+++..+.-+-++.
T Consensus 71 ~~l~~~i~~q~~~l~~~~~~~e~~r~~l~~a~~~~k~lekL~ek~ 115 (141)
T TIGR02473 71 RQLDQRIQQQQQELALLQQEVEAKRERLLEARRELKALEKLKEKK 115 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555666666666666666666666655555444443
No 407
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=24.97 E-value=2.5e+02 Score=31.38 Aligned_cols=52 Identities=21% Similarity=0.319 Sum_probs=42.5
Q ss_pred hhhHHHHHhhhHHHHHHHHHhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Q 001810 266 EDGLLLAAENDIKECQANLANCETELRRLQSKKEELQKEVDRLNEVAEKAQM 317 (1010)
Q Consensus 266 ~~~~~~~a~~~~~~~~~~l~~~~~~l~~~~~~~~~lq~~~~~l~~~~~~a~~ 317 (1010)
..+++..++.++..|..++.+-+.++..++..+--+|.+++.+++.-.+++.
T Consensus 29 ~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~ 80 (239)
T COG1579 29 IRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEE 80 (239)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5588888899999998888888888888888888888888888877666554
No 408
>COG1390 NtpE Archaeal/vacuolar-type H+-ATPase subunit E [Energy production and conversion]
Probab=24.80 E-value=7.9e+02 Score=26.51 Aligned_cols=45 Identities=18% Similarity=0.156 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHhch-hHHHHHHHhhhHhHHHHHHHHHHHHHHHHH
Q 001810 175 EEKAQRISEAAIALK-DEAANAWNNVNVTLDMVHEIVNEECIAKEA 219 (1010)
Q Consensus 175 e~~~~~~~~~ai~~~-d~~~~~~~~~~~~~~~~~~~~~~e~~a~~~ 219 (1010)
|+||.+|.+.|..-- -..+.|-.......+.+|..+.+|......
T Consensus 16 ~eeak~I~~eA~~eae~i~~ea~~~~~~~~~~~~~~~~~ea~~~~~ 61 (194)
T COG1390 16 EEEAEEILEEAREEAEKIKEEAKREAEEAIEEILRKAEKEAERERQ 61 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555554443321 122334444455555666666666554433
No 409
>PRK07353 F0F1 ATP synthase subunit B'; Validated
Probab=24.75 E-value=6.9e+02 Score=24.75 Aligned_cols=73 Identities=16% Similarity=0.149 Sum_probs=35.0
Q ss_pred HHHHhhhHHHHHHHHHhhHHHHHHHhhhHHHHHHHHHHHHHHHHH-HHHHHhhhHHHHHHHHHHHHHHHHHHHHHhh
Q 001810 270 LLAAENDIKECQANLANCETELRRLQSKKEELQKEVDRLNEVAEK-AQMNALKAEEDVANIMLLAEQAVAFEIEATQ 345 (1010)
Q Consensus 270 ~~~a~~~~~~~~~~l~~~~~~l~~~~~~~~~lq~~~~~l~~~~~~-a~~~a~~a~~~~~~~m~~ae~av~~e~ea~~ 345 (1010)
+..|++...+++..+.+.+.+|+..+.+..++-++. .+-|++ .+..-.+|++++..++.-|++.+..|-+.+.
T Consensus 45 l~~Ae~~~~ea~~~~~~~e~~L~~a~~ea~~i~~~a---~~~a~~~~~~~~~~a~~ea~~~~~~a~~~i~~e~~~a~ 118 (140)
T PRK07353 45 RAEAKERLAEAEKLEAQYEQQLASARKQAQAVIAEA---EAEADKLAAEALAEAQAEAQASKEKARREIEQQKQAAL 118 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555555555555554443333222221 111111 1112234666777777777777766655443
No 410
>PRK12704 phosphodiesterase; Provisional
Probab=24.74 E-value=1.4e+03 Score=28.33 Aligned_cols=28 Identities=21% Similarity=0.348 Sum_probs=11.3
Q ss_pred hHHHHHhhhHHHHHHHHHhhHHHHHHHh
Q 001810 268 GLLLAAENDIKECQANLANCETELRRLQ 295 (1010)
Q Consensus 268 ~~~~~a~~~~~~~~~~l~~~~~~l~~~~ 295 (1010)
+.|..-++++.+-+.+|..-+.+|...+
T Consensus 103 e~Lekke~eL~~re~~Le~re~eLe~~~ 130 (520)
T PRK12704 103 ELLEKREEELEKKEKELEQKQQELEKKE 130 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444444444443333
No 411
>PRK09765 PTS system 2-O-a-mannosyl-D-glycerate specific transporter subunit IIABC; Provisional
Probab=24.65 E-value=3e+02 Score=34.85 Aligned_cols=15 Identities=40% Similarity=0.485 Sum_probs=11.3
Q ss_pred hHHHHHHHHHHHcCC
Q 001810 845 SMALGAFLAGLLLAE 859 (1010)
Q Consensus 845 SgvLGAFiAGLiLs~ 859 (1010)
++++|+.++|++.+.
T Consensus 379 sgflg~Ii~~~l~gy 393 (631)
T PRK09765 379 SGFLGAVVGGLIAGY 393 (631)
T ss_pred CccHHHHHHHHHHHH
Confidence 777777777777775
No 412
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=24.64 E-value=1.6e+03 Score=29.06 Aligned_cols=32 Identities=34% Similarity=0.309 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Q 001810 153 LRELLMNAMKELEVAQLNSTMFEEKAQRISEA 184 (1010)
Q Consensus 153 l~~~l~~a~~~le~a~~~~~~~e~~~~~~~~~ 184 (1010)
|.--||.+.++|+.++.--+-+.+|.-+..+.
T Consensus 284 L~~~L~e~Q~qLe~a~~als~q~eki~~L~e~ 315 (717)
T PF09730_consen 284 LLSNLQESQKQLEHAQGALSEQQEKINRLTEQ 315 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555666666655555455544444443
No 413
>PRK13455 F0F1 ATP synthase subunit B; Provisional
Probab=24.50 E-value=8.2e+02 Score=25.67 Aligned_cols=88 Identities=20% Similarity=0.242 Sum_probs=45.8
Q ss_pred HhhhHHHHHHHHHhhHHHHHHHhhhHHHHHHHHHHHHHHHHH-HHHHHhhhHHHHHHHHHHHHHHHHHHHHHhhhc---c
Q 001810 273 AENDIKECQANLANCETELRRLQSKKEELQKEVDRLNEVAEK-AQMNALKAEEDVANIMLLAEQAVAFEIEATQRV---N 348 (1010)
Q Consensus 273 a~~~~~~~~~~l~~~~~~l~~~~~~~~~lq~~~~~l~~~~~~-a~~~a~~a~~~~~~~m~~ae~av~~e~ea~~~~---~ 348 (1010)
|.+-..+.+..+++.+.+|+..+.+..+.-++ -.+-|++ ++-.-.+|+.+++.++.-|++.+..|=+.+.+- .
T Consensus 70 Ae~~~~eA~~~l~e~e~~L~~A~~ea~~Ii~~---A~~~a~~~~e~~~~~a~~ea~~~~~~A~~~I~~ek~~a~~~l~~~ 146 (184)
T PRK13455 70 ARALREEAQTLLASYERKQREVQEQADRIVAA---AKDEAQAAAEQAKADLEASIARRLAAAEDQIASAEAAAVKAVRDR 146 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555555666666655554433333222 2222221 222334566677788887877776665544322 2
Q ss_pred cHHHHHHHHHHhhcC
Q 001810 349 DAEIALQRAEKSLSN 363 (1010)
Q Consensus 349 ~~e~~l~~~~~~~~~ 363 (1010)
=++.|++.|+|-+..
T Consensus 147 i~~lA~~~a~kil~~ 161 (184)
T PRK13455 147 AVSVAVAAAADVIAK 161 (184)
T ss_pred HHHHHHHHHHHHHhh
Confidence 245677777776544
No 414
>PRK12933 secD preprotein translocase subunit SecD; Reviewed
Probab=24.48 E-value=1.5e+03 Score=28.73 Aligned_cols=130 Identities=15% Similarity=0.207 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHH--HHhchhHHHHHHH-HHHHcCCC-----
Q 001810 789 AAVKAAVAITAIIAGGRLLLRPIYKQIAENQNAEIFSANTLLVILGTSLLT--ARAGLSMALGAFL-AGLLLAET----- 860 (1010)
Q Consensus 789 ~ll~vilgiii~llvg~~llr~llr~i~~~~~~ei~l~ltLll~f~~~llA--e~lGlSgvLGAFi-AGLiLs~~----- 860 (1010)
.+-..+.++++++++..+++...+++.. --..+-+.+.+++.+++..+. .-+.+.++.|-.+ .|+.+-..
T Consensus 438 ~i~~gl~A~iig~vlV~lFm~~~Yr~~g--lva~iAL~~~l~l~l~vmsll~G~tLtLpgIAGiILtIGmaVDanIVI~E 515 (604)
T PRK12933 438 NIENGFAALALGMGITLLFMALWYRRLG--WVANVALIANMVCLFGLLALIPGAVLTLPGIAGLVLTVGMAVDTNVLIFE 515 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHhhccCcEEEeh
Q ss_pred ----------chhHHHHHHHHhHHH-----------HHHHHHHHHhhcccChhhhhhhhhhHHHHHHHHHHHHHHHHHHH
Q 001810 861 ----------EFSLQVESDIAPYRG-----------LLLGLFFMTVGMSIDPKLLLSNFPVITGALGLLIGGKTILVALV 919 (1010)
Q Consensus 861 ----------~~~~~L~e~l~~i~~-----------~f~PLFFVlIGl~Ldl~~L~~~~~~iilillvvil~K~l~v~l~ 919 (1010)
.....+..-++.... .+.|+||+-.|. +..-.+.-.++.+..++..+++.|.+..++.
T Consensus 516 RIrEel~~G~s~~~Ai~~G~~~a~~~IldanlTTlia~lpL~~~Ggg~-ikgFAvTL~iGIl~S~ftAi~vtr~l~~~~~ 594 (604)
T PRK12933 516 RIKDKLKEGRSFAQAIDTGFDSAFSTIFDANFTTMITAVVLYSIGNGP-IQGFALTLGLGLLTSMFTGIFASRALINLVY 594 (604)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q ss_pred HH
Q 001810 920 GR 921 (1010)
Q Consensus 920 ~~ 921 (1010)
..
T Consensus 595 ~~ 596 (604)
T PRK12933 595 GR 596 (604)
T ss_pred cc
No 415
>PRK10884 SH3 domain-containing protein; Provisional
Probab=24.43 E-value=3.8e+02 Score=29.24 Aligned_cols=38 Identities=24% Similarity=0.372 Sum_probs=16.7
Q ss_pred HHHhhhHHHHHHHHHhhHHHHHHHhhhHHHHHHHHHHHHHH
Q 001810 271 LAAENDIKECQANLANCETELRRLQSKKEELQKEVDRLNEV 311 (1010)
Q Consensus 271 ~~a~~~~~~~~~~l~~~~~~l~~~~~~~~~lq~~~~~l~~~ 311 (1010)
...+.++.+.++.|+|...+. +.++.|+|++++.++..
T Consensus 96 p~le~el~~l~~~l~~~~~~~---~~~~~~l~~~~~~~~~~ 133 (206)
T PRK10884 96 PDLENQVKTLTDKLNNIDNTW---NQRTAEMQQKVAQSDSV 133 (206)
T ss_pred HHHHHHHHHHHHHHHHHHhHH---HHHHHHHHHHHHHHHHH
Confidence 334444444444444444332 23444555554444333
No 416
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=24.42 E-value=5.2e+02 Score=33.56 Aligned_cols=14 Identities=36% Similarity=0.467 Sum_probs=6.3
Q ss_pred hhchhHHHHHHHHh
Q 001810 523 KQLPKLVLGFLLFG 536 (1010)
Q Consensus 523 ~~~~~~~~g~~~~~ 536 (1010)
..+.+.+--.++-|
T Consensus 708 ~~l~~~ld~a~~~g 721 (771)
T TIGR01069 708 DRLEKFLNDALLAG 721 (771)
T ss_pred HHHHHHHHHHHHCC
Confidence 44444444444444
No 417
>COG2268 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.25 E-value=1.1e+03 Score=29.45 Aligned_cols=51 Identities=31% Similarity=0.282 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH----HHHHHhhhcccHHHHHHHHHH
Q 001810 308 LNEVAEKAQMNALKAEEDVANIMLLAEQAVA----FEIEATQRVNDAEIALQRAEK 359 (1010)
Q Consensus 308 l~~~~~~a~~~a~~a~~~~~~~m~~ae~av~----~e~ea~~~~~~~e~~l~~~~~ 359 (1010)
.-++++.++++-.+|+...+.++..|| |.+ .|-||.++..+|...+..|.+
T Consensus 401 ~v~i~~~~e~~~aea~a~~a~~~~~Ae-a~r~kG~AEAea~r~lAEa~~~~~~a~~ 455 (548)
T COG2268 401 QVEIAVRAEAAKAEAEAQAAEIKAEAE-AIREKGKAEAEAKRALAEAIQVLGDAAA 455 (548)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHhHHH-HHHHhhhhhHHHHHHHHHHHHHhhhHHH
Confidence 334555556666667777777777775 222 478888888888888888833
No 418
>PF14235 DUF4337: Domain of unknown function (DUF4337)
Probab=24.22 E-value=2.2e+02 Score=29.66 Aligned_cols=39 Identities=23% Similarity=0.304 Sum_probs=29.3
Q ss_pred HHHHHHHhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Q 001810 279 ECQANLANCETELRRLQSKKEELQKEVDRLNEVAEKAQM 317 (1010)
Q Consensus 279 ~~~~~l~~~~~~l~~~~~~~~~lq~~~~~l~~~~~~a~~ 317 (1010)
..+...+..+.|-.++..+++||++++...++..+.+..
T Consensus 70 ~~~~~i~~Y~~~~~~~~~e~~~l~~~A~~~e~~~d~~~~ 108 (157)
T PF14235_consen 70 AYQKKIARYKKEKARYKSEAEELEAKAKEAEAESDHALH 108 (157)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhc
Confidence 445667777888888888888888888877777766553
No 419
>PF10136 SpecificRecomb: Site-specific recombinase; InterPro: IPR011385 This group represents a site-specific recombinase Gcr. Please see the following relevant reference: [].
Probab=24.17 E-value=1.6e+03 Score=28.77 Aligned_cols=23 Identities=35% Similarity=0.407 Sum_probs=18.1
Q ss_pred HHHHh--chhHHHHHHHHHHHcCCC
Q 001810 838 LTARA--GLSMALGAFLAGLLLAET 860 (1010)
Q Consensus 838 lAe~l--GlSgvLGAFiAGLiLs~~ 860 (1010)
+++++ +++++.|-|..|++++-+
T Consensus 521 ~A~y~~~N~g~l~gN~~fG~lLG~t 545 (643)
T PF10136_consen 521 LADYVERNLGGLAGNFSFGFLLGMT 545 (643)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHhhH
Confidence 45555 678999999999999853
No 420
>KOG4398 consensus Predicted coiled-coil protein [General function prediction only]
Probab=24.11 E-value=2.8e+02 Score=31.56 Aligned_cols=60 Identities=20% Similarity=0.295 Sum_probs=41.8
Q ss_pred HHHHhhhHHHHHHHHHhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 001810 270 LLAAENDIKECQANLANCETELRRLQSKKEELQKEVDRLNEVAEKAQMNALKAEEDVANI 329 (1010)
Q Consensus 270 ~~~a~~~~~~~~~~l~~~~~~l~~~~~~~~~lq~~~~~l~~~~~~a~~~a~~a~~~~~~~ 329 (1010)
++-+.+-...-...+...=.+++++|.||+++|.--.||-++-|+-..+-.--=|-.+|.
T Consensus 21 ~~~~~~~~~k~~e~~qkl~sr~~~~~ekke~i~r~n~k~~d~v~~~~~~~~~~~erl~~l 80 (359)
T KOG4398|consen 21 MEKNSEGLLKTKEKNQKLYSRAQRHQEKKEKIQRHNRKLGDLVEKKTIDLRSHYERLANL 80 (359)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHHHHHHHH
Confidence 333333333333444444559999999999999999999999888877766655666554
No 421
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=24.08 E-value=2e+03 Score=29.89 Aligned_cols=156 Identities=23% Similarity=0.265 Sum_probs=82.7
Q ss_pred cHHHHHHHHHHHHHHHHHhhhhhHHH---HHHHHHHHHHHhchhHHHHHHHhhhHhHHHHHHHHHHHHHHHHH----HHH
Q 001810 150 TDELRELLMNAMKELEVAQLNSTMFE---EKAQRISEAAIALKDEAANAWNNVNVTLDMVHEIVNEECIAKEA----VHK 222 (1010)
Q Consensus 150 ~~~l~~~l~~a~~~le~a~~~~~~~e---~~~~~~~~~ai~~~d~~~~~~~~~~~~~~~~~~~~~~e~~a~~~----~~~ 222 (1010)
++.+.-=+.|+++++|.++--..-+| |++++..+.---=-+.-..--+.-+.+|+-||+.+.+|..+--+ .++
T Consensus 407 lK~~~~k~kKleke~ek~~~~~~e~e~~pe~~~~~i~~~~~ei~~L~~~~~~~~~~l~e~~~~l~~~t~~~~~e~~~~ek 486 (1293)
T KOG0996|consen 407 LKRLTSKIKKLEKEIEKARRKKSELEKAPEKARIEIQKCQTEIEQLEELLEKEERELDEILDSLKQETEGIREEIEKLEK 486 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHhCchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHH
Confidence 56666666777777776665443333 44544444332222334444566788888888888777654322 222
Q ss_pred HHHHH----HHHHHHHHHHHHHhhhhccCCCCCCCCcccccCCCCcchhhHHHHHhhhHHHHHHHHHhhHHHHHHHhhhH
Q 001810 223 ATMAL----SLAEARLQVAIESLQDVKQEDDYPEGSTEDDAKSDGKEEDGLLLAAENDIKECQANLANCETELRRLQSKK 298 (1010)
Q Consensus 223 ~~~~~----~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~l~~~~~~l~~~~~~~ 298 (1010)
.-|-+ --|+.++|+|..-|+-.. +.+..+-+++.+=.+.|+..++++++-++.+...+.+|.++..++
T Consensus 487 el~~~~~~~n~~~~e~~vaesel~~L~--------~~~~~~~~~~e~lk~~L~~~~~~~~e~~~~l~~~k~~l~~~k~e~ 558 (1293)
T KOG0996|consen 487 ELMPLLKQVNEARSELDVAESELDILL--------SRHETGLKKVEELKGKLLASSESLKEKKTELDDLKEELPSLKQEL 558 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 22211 224556666655554432 111222233333445566666666666666666666666655555
Q ss_pred HHHHHHHHHHHHHHH
Q 001810 299 EELQKEVDRLNEVAE 313 (1010)
Q Consensus 299 ~~lq~~~~~l~~~~~ 313 (1010)
.+.-|++.++..-..
T Consensus 559 ~~~~k~l~~~~~e~~ 573 (1293)
T KOG0996|consen 559 KEKEKELPKLRKEER 573 (1293)
T ss_pred HHHHHhHHHHHHHHH
Confidence 555555555544433
No 422
>TIGR00927 2A1904 K+-dependent Na+/Ca+ exchanger.
Probab=23.96 E-value=1.8e+02 Score=38.37 Aligned_cols=28 Identities=11% Similarity=0.277 Sum_probs=15.0
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHhchhHH
Q 001810 164 LEVAQLNSTMFEEKAQRISEAAIALKDEA 192 (1010)
Q Consensus 164 le~a~~~~~~~e~~~~~~~~~ai~~~d~~ 192 (1010)
+=.+-.-+..|-.-+..||+. ..+.+..
T Consensus 469 v~LaIv~dDyFVPSLe~IAek-LgLSE~V 496 (1096)
T TIGR00927 469 VALAIVCDEYFVPALGVITDK-LQISEDV 496 (1096)
T ss_pred HHHHHHHHHHhHHHHHHHHHH-hCCcHhh
Confidence 334455556677777777653 3333333
No 423
>PF11570 E2R135: Coiled-coil receptor-binding R-domain of colicin E2; InterPro: IPR024566 Bacteriocins are protein antibiotics that kill bacteria closely related to the producing species. Colicins are a subgroup of bacteriocins that are produced by and target Escherichia coli. The lethal action of most colicins is exerted either by formation of a pore in the cytoplasmic membrane of the target cell, or by an enzymatic nuclease digestion mechanism. Most colicins are able to translocate the outer membrane by a two-receptor system, where one receptor is used for the initial binding and the second for translocation. The initial binding is to cell surface receptors such as the porins OmpF, FepA, BtuB, Cir and FhuA. The presence of specific periplasmic proteins, such as TolA, TolB, TolC, or TonB, are required for translocation across the membrane []. Colicins are composed of domains with distinct functional roles. In general they contain a central R (receptor) domain that mediates receptor binding, an N-terminal T (translocation) domain that mediates translocation of the protein from the outer membrane receptor to the colicin's target within the cell, and a C-terminal C (catalytic) domain that performs the catalytic cleavage []. This entry represents the central R domain found in colicin-E2 and other colicins.; PDB: 2YSU_B 1UJW_B 2B5U_C 1JCH_A.
Probab=23.94 E-value=8e+02 Score=25.18 Aligned_cols=88 Identities=16% Similarity=0.199 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCcccccCCCCcchhhHHHHHhhhHHHHHHHHHhhHHHHHHHhhhHH
Q 001810 220 VHKATMALSLAEARLQVAIESLQDVKQEDDYPEGSTEDDAKSDGKEEDGLLLAAENDIKECQANLANCETELRRLQSKKE 299 (1010)
Q Consensus 220 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~l~~~~~~l~~~~~~~~ 299 (1010)
+.-..-+|.-|++.+.- .|.-.--+-..+||+.-.-. .. ...+-.+....|-+++|..-|..|-
T Consensus 38 ~~~r~seldqA~~~~~e-ae~k~~~~~a~~P~~~~~~~--------wq-------lkvr~a~~dv~nkq~~l~AA~~~l~ 101 (136)
T PF11570_consen 38 LNGRRSELDQANKKVKE-AEIKQDEFFANNPPHEYGRG--------WQ-------LKVRRAQKDVQNKQNKLKAAQKELN 101 (136)
T ss_dssp HHHHHHHHHHHHHHHHH-HHHHHCCCCTT-TTSSCHHH--------HH-------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHH-HHhcccccccCCCccccccH--------HH-------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555566666655 23333335567777764311 12 2333333444455566666777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhH
Q 001810 300 ELQKEVDRLNEVAEKAQMNALKAE 323 (1010)
Q Consensus 300 ~lq~~~~~l~~~~~~a~~~a~~a~ 323 (1010)
+++.|+.|-++.+.+|...-.++|
T Consensus 102 ~~~~el~~~~~al~~A~e~Rkq~e 125 (136)
T PF11570_consen 102 AADEELNRIQAALSQAMERRKQKE 125 (136)
T ss_dssp HHH-------HHHHHHHHHHHHHH
T ss_pred HhhhhhHHHHHHHHHHHHHHHHhh
Confidence 888888888888888876666555
No 424
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=23.81 E-value=2e+02 Score=28.21 Aligned_cols=48 Identities=27% Similarity=0.304 Sum_probs=33.4
Q ss_pred chhhHHHHHhhhHHHHHHHHHhhHHHHHHHhhhHHHHHHHHHHHHHHH
Q 001810 265 EEDGLLLAAENDIKECQANLANCETELRRLQSKKEELQKEVDRLNEVA 312 (1010)
Q Consensus 265 ~~~~~~~~a~~~~~~~~~~l~~~~~~l~~~~~~~~~lq~~~~~l~~~~ 312 (1010)
+|+.--..-+++++.+.++|-.-+.|+..|.=+-.-|.|.|..|++=.
T Consensus 23 eEQ~k~~~L~e~Lk~ke~~LRk~eqE~dSL~FrN~QL~kRV~~LQ~El 70 (102)
T PF10205_consen 23 EEQAKNAELKEQLKEKEQALRKLEQENDSLTFRNQQLTKRVEVLQEEL 70 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355555566777888888888888877777777777777776666533
No 425
>PF02447 GntP_permease: GntP family permease; InterPro: IPR003474 This is a family of integral membrane permeases that are involved in gluconate uptake. Escherichia coli contains several members of this family including GntU, a low affinity transporter [] and GntT, a high affinity transporter [].; GO: 0015128 gluconate transmembrane transporter activity, 0035429 gluconate transmembrane transport, 0016020 membrane
Probab=23.78 E-value=1.4e+03 Score=27.86 Aligned_cols=23 Identities=22% Similarity=0.479 Sum_probs=18.0
Q ss_pred HHHHHhcCCCchHHHHHHHHHhhc
Q 001810 617 VPIFQKIPGGSPVLGYLAAGILIG 640 (1010)
Q Consensus 617 g~Ll~Rl~gLP~vVG~ILaGILLG 640 (1010)
-.+.-|+ |++|++..+++.+++|
T Consensus 14 i~Li~k~-klhpF~aLl~~al~~g 36 (441)
T PF02447_consen 14 IVLIIKF-KLHPFLALLIVALIVG 36 (441)
T ss_pred HHHHHHH-hhhHHHHHHHHHHHHH
Confidence 3455577 8999999988888777
No 426
>cd07647 F-BAR_PSTPIP The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Vetebrates contain two Proline-Serine-Threonine Phosphatase-Interacting Proteins (PSTPIPs), PSTPIP1 and PSTPIP2. PSTPIPs are mainly expressed in hematopoietic cells and are involved in the regulation of cell adhesion and motility. Mutations in PSTPIPs have been shown to cause autoinflammatory disorders. PSTPIP1 contains an N-terminal F-BAR domain, PEST motifs, and a C-terminal SH3 domain, while PSTPIP2 contains only the N-terminal F-BAR domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=23.65 E-value=5.3e+02 Score=28.24 Aligned_cols=35 Identities=23% Similarity=0.271 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 001810 302 QKEVDRLNEVAEKAQMNALKAEEDVANIMLLAEQA 336 (1010)
Q Consensus 302 q~~~~~l~~~~~~a~~~a~~a~~~~~~~m~~ae~a 336 (1010)
+||++|++.++.+++.++.+|+++-.+...-.+..
T Consensus 152 ~ke~eK~~~K~~k~~~~~~~a~~~Y~~~v~~l~~~ 186 (239)
T cd07647 152 PKEAEKLKKKAAQCKTSAEEADSAYKSSIGCLEDA 186 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57899999999999999999999988876655544
No 427
>PRK15030 multidrug efflux system transporter AcrA; Provisional
Probab=23.60 E-value=2.8e+02 Score=32.61 Aligned_cols=22 Identities=27% Similarity=0.249 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh
Q 001810 222 KATMALSLAEARLQVAIESLQD 243 (1010)
Q Consensus 222 ~~~~~~~~a~~~~~~~~~~~~~ 243 (1010)
.|...+..|+++++.|...++-
T Consensus 152 ~a~a~~~~a~a~l~~a~~~l~~ 173 (397)
T PRK15030 152 QANAAVTAAKAAVETARINLAY 173 (397)
T ss_pred HHHHHHHHHHHHHHHHHHhhcC
Confidence 3445555666666666555544
No 428
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=23.56 E-value=4.7e+02 Score=27.62 Aligned_cols=36 Identities=25% Similarity=0.350 Sum_probs=24.4
Q ss_pred HHHHHHhhHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q 001810 280 CQANLANCETELRRLQSKKEELQKEVDRLNEVAEKA 315 (1010)
Q Consensus 280 ~~~~l~~~~~~l~~~~~~~~~lq~~~~~l~~~~~~a 315 (1010)
.+......+.|+..||.+.++|++|+.+|...-..-
T Consensus 102 ~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~ 137 (161)
T TIGR02894 102 LQKENERLKNQNESLQKRNEELEKELEKLRQRLSTI 137 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445556778888888888888887777655443
No 429
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=23.39 E-value=2.3e+02 Score=31.36 Aligned_cols=32 Identities=28% Similarity=0.419 Sum_probs=17.7
Q ss_pred HHHHhhHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 001810 282 ANLANCETELRRLQSKKEELQKEVDRLNEVAE 313 (1010)
Q Consensus 282 ~~l~~~~~~l~~~~~~~~~lq~~~~~l~~~~~ 313 (1010)
..|.+.|.|+..+|.+..+|.+|-++|+|.-.
T Consensus 156 ~eleele~e~ee~~erlk~le~E~s~LeE~~~ 187 (290)
T COG4026 156 KELEELEAEYEEVQERLKRLEVENSRLEEMLK 187 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555556666666666666665543
No 430
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=23.30 E-value=9.3e+02 Score=25.78 Aligned_cols=11 Identities=45% Similarity=0.567 Sum_probs=5.3
Q ss_pred CChHHHHHHhh
Q 001810 709 LPGPASIVIGN 719 (1010)
Q Consensus 709 ls~~~ALLLGa 719 (1010)
+|+...+++|+
T Consensus 178 l~~~~~iiig~ 188 (206)
T PF06570_consen 178 LPPWVYIIIGV 188 (206)
T ss_pred CCHHHHHHHHH
Confidence 34445555553
No 431
>PRK13460 F0F1 ATP synthase subunit B; Provisional
Probab=23.29 E-value=8.6e+02 Score=25.30 Aligned_cols=92 Identities=11% Similarity=0.037 Sum_probs=0.0
Q ss_pred hhHHHHHhhhHHHHHHHHHhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhhh
Q 001810 267 DGLLLAAENDIKECQANLANCETELRRLQSKKEELQKEVDRLNEVAEKAQMNALKAEEDVANIMLLAEQAVAFEIEATQR 346 (1010)
Q Consensus 267 ~~~~~~a~~~~~~~~~~l~~~~~~l~~~~~~~~~lq~~~~~l~~~~~~a~~~a~~a~~~~~~~m~~ae~av~~e~ea~~~ 346 (1010)
...+..|++.-.+.+..+.+++.+|+..+.+-.+.-++..+ +.....+..-.+|++++..+.--|++.+..|-+.+.+
T Consensus 53 ~~~l~~Ae~~~~eA~~~~~e~e~~l~~a~~ea~~ii~~A~~--ea~~~~~~~~~~A~~ea~~~~~~a~~~ie~e~~~a~~ 130 (173)
T PRK13460 53 QNDINKASELRLEAEALLKDYEARLNSAKDEANAIVAEAKS--DALKLKNKLLEETNNEVKAQKDQAVKEIELAKGKALS 130 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred cccHHHHHHHHHHh
Q 001810 347 VNDAEIALQRAEKS 360 (1010)
Q Consensus 347 ~~~~e~~l~~~~~~ 360 (1010)
--..|++-.-.+..
T Consensus 131 el~~ei~~lA~~~a 144 (173)
T PRK13460 131 QLQNQIVEMTITIA 144 (173)
T ss_pred HHHHHHHHHHHHHH
No 432
>smart00283 MA Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Thought to undergo reversible methylation in response to attractants or repellants during bacterial chemotaxis.
Probab=23.17 E-value=9e+02 Score=25.51 Aligned_cols=135 Identities=15% Similarity=0.136 Sum_probs=0.0
Q ss_pred HHHHHHHhchhHHHHHHHhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCccccc
Q 001810 180 RISEAAIALKDEAANAWNNVNVTLDMVHEIVNEECIAKEAVHKATMALSLAEARLQVAIESLQDVKQEDDYPEGSTEDDA 259 (1010)
Q Consensus 180 ~~~~~ai~~~d~~~~~~~~~~~~~~~~~~~~~~e~~a~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (1010)
+|+..+-.+.+.+..--..+..+-+.+++....=....++++...-...-.....+-..+......
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-------------- 66 (262)
T smart00283 1 DVSEAVEEIAAGAEEQAEELEELAERMEELSASIEEVAANADEIAATAQSAAEAAEEGREAVEDAI-------------- 66 (262)
T ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------
Q ss_pred CCCCcchhhHHHHHhhhHHHHHHHHHhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHH-------HHHHHHH
Q 001810 260 KSDGKEEDGLLLAAENDIKECQANLANCETELRRLQSKKEELQKEVDRLNEVAEKAQMNALKAEED-------VANIMLL 332 (1010)
Q Consensus 260 ~~~~~~~~~~~~~a~~~~~~~~~~l~~~~~~l~~~~~~~~~lq~~~~~l~~~~~~a~~~a~~a~~~-------~~~~m~~ 332 (1010)
+......+.+.+......+.......+....+++.+-.++.+.+|..|.+.|.+|-+. +..|=.|
T Consensus 67 --------~~~~~~~~~~~~~~~~i~~i~~~~~~i~~~~~~i~~~a~~~~~la~na~ieA~~ag~~g~~~~~va~~I~~l 138 (262)
T smart00283 67 --------TAMDQIREVVEEAVSAVEELEESSDEIGEIVSVIDDIADQTNLLALNAAIEAARAGEAGRGFAVVADEVRKL 138 (262)
T ss_pred --------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcCCCCchhhHHHHHHH
Q ss_pred HHHH
Q 001810 333 AEQA 336 (1010)
Q Consensus 333 ae~a 336 (1010)
|+|.
T Consensus 139 a~~t 142 (262)
T smart00283 139 AERS 142 (262)
T ss_pred HHHH
No 433
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=23.15 E-value=5.7e+02 Score=29.53 Aligned_cols=36 Identities=25% Similarity=0.484 Sum_probs=16.5
Q ss_pred hhhHHHHHHHHHhhHHHHHHHhhhHHHHHHHHHHHH
Q 001810 274 ENDIKECQANLANCETELRRLQSKKEELQKEVDRLN 309 (1010)
Q Consensus 274 ~~~~~~~~~~l~~~~~~l~~~~~~~~~lq~~~~~l~ 309 (1010)
++++++-+..-.+-..||+.++...++|.+|...|.
T Consensus 49 ~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le 84 (314)
T PF04111_consen 49 EEELEKLEQEEEELLQELEELEKEREELDQELEELE 84 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444455555555555555444443
No 434
>KOG0432 consensus Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=23.15 E-value=3.4e+02 Score=35.61 Aligned_cols=24 Identities=38% Similarity=0.668 Sum_probs=21.5
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHH
Q 001810 288 ETELRRLQSKKEELQKEVDRLNEV 311 (1010)
Q Consensus 288 ~~~l~~~~~~~~~lq~~~~~l~~~ 311 (1010)
..|+..|+.|.++|||++++|+.-
T Consensus 929 ~~e~~kl~kkl~klqk~~~~l~~r 952 (995)
T KOG0432|consen 929 DSEIQKLAKKLEKLQKQLDKLQAR 952 (995)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 459999999999999999999876
No 435
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=22.99 E-value=1.1e+03 Score=26.33 Aligned_cols=50 Identities=28% Similarity=0.445 Sum_probs=26.6
Q ss_pred HHhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 001810 284 LANCETELRRLQSKKEELQKEVDRLNEVAEKAQMNALKAEEDVANIMLLA 333 (1010)
Q Consensus 284 l~~~~~~l~~~~~~~~~lq~~~~~l~~~~~~a~~~a~~a~~~~~~~m~~a 333 (1010)
+.+-+.+..++..-+..-.+|+.+|++.++.|+.+-.+|.+-..++|...
T Consensus 84 ~~e~~~~i~~l~ee~~~ke~Ea~~lq~el~~ar~~~~~ak~~L~~~~~~~ 133 (246)
T PF00769_consen 84 LREAEAEIARLEEESERKEEEAEELQEELEEAREDEEEAKEELLEVMSAP 133 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 34444445555555555556666666666666666666666666665544
No 436
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=22.92 E-value=1.2e+03 Score=26.95 Aligned_cols=39 Identities=23% Similarity=0.402 Sum_probs=18.1
Q ss_pred HHhhhHHHHHHHHHhhHHHHHHHhhhHHHHHHHHHHHHH
Q 001810 272 AAENDIKECQANLANCETELRRLQSKKEELQKEVDRLNE 310 (1010)
Q Consensus 272 ~a~~~~~~~~~~l~~~~~~l~~~~~~~~~lq~~~~~l~~ 310 (1010)
..+.++.+.|..|.+-+..++....+|.|++.++..+.-
T Consensus 222 ~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~ 260 (312)
T smart00787 222 IKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEK 260 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444444433
No 437
>PRK09561 nhaA pH-dependent sodium/proton antiporter; Reviewed
Probab=22.69 E-value=3e+02 Score=32.82 Aligned_cols=21 Identities=29% Similarity=0.717 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHhhcccChhhh
Q 001810 874 RGLLLGLFFMTVGMSIDPKLL 894 (1010)
Q Consensus 874 ~~~f~PLFFVlIGl~Ldl~~L 894 (1010)
++.++.+||..+|+.+.-+.+
T Consensus 64 NDgLMaiFFf~vGLEiKrE~~ 84 (388)
T PRK09561 64 NDGLMAVFFLLIGLEVKRELL 84 (388)
T ss_pred HhhHHHHHHHHHHHHHHHHHH
Confidence 689999999999999975544
No 438
>CHL00118 atpG ATP synthase CF0 B' subunit; Validated
Probab=22.56 E-value=8.4e+02 Score=24.95 Aligned_cols=27 Identities=11% Similarity=0.115 Sum_probs=18.3
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHhh
Q 001810 319 ALKAEEDVANIMLLAEQAVAFEIEATQ 345 (1010)
Q Consensus 319 a~~a~~~~~~~m~~ae~av~~e~ea~~ 345 (1010)
-.+|+++...++--|++-+..|-+.+.
T Consensus 109 ~~~A~~ea~~~~~~a~~~i~~ek~~a~ 135 (156)
T CHL00118 109 LKQAQKYIDSLLNEATKQLEAQKEKAL 135 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677777777777777777766544
No 439
>PF06696 Strep_SA_rep: Streptococcal surface antigen repeat; InterPro: IPR009578 This family consists of a number of ~25 residue long repeats found commonly in Streptococcal surface antigens although one copy is present in the HPSR2-heavy chain potential motor protein of Giardia lamblia (Giardia intestinalis) (Q24984 from SWISSPROT). This family is often found in conjunction with IPR001899 from INTERPRO.; PDB: 3IOX_A 3IPK_A 2WD6_B 1JMM_A.
Probab=22.55 E-value=1.5e+02 Score=21.99 Aligned_cols=23 Identities=35% Similarity=0.528 Sum_probs=18.5
Q ss_pred HHHHHHHhhHHHHHHHhhhHHHH
Q 001810 279 ECQANLANCETELRRLQSKKEEL 301 (1010)
Q Consensus 279 ~~~~~l~~~~~~l~~~~~~~~~l 301 (1010)
+-|+.|+..+.||.|+|....+.
T Consensus 2 ~Yqakla~YqaeLa~vqk~na~~ 24 (25)
T PF06696_consen 2 DYQAKLAQYQAELARVQKANADY 24 (25)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHhhcc
Confidence 45789999999999998766554
No 440
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=22.55 E-value=1e+03 Score=25.85 Aligned_cols=70 Identities=20% Similarity=0.145 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHHHhhhhccCCCCCCCCcccccCCCCcchhhHHHHHhhhHHHHHHHHHhhHHHHHHHhhhHHHHHHHH
Q 001810 226 ALSLAEARLQVAIESLQDVKQEDDYPEGSTEDDAKSDGKEEDGLLLAAENDIKECQANLANCETELRRLQSKKEELQKEV 305 (1010)
Q Consensus 226 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~l~~~~~~l~~~~~~~~~lq~~~ 305 (1010)
+-..++-+-+.|..+++..+ |+.| ..|-++..+++..+...+.++..++...++|+..+
T Consensus 64 ~~~~~~~~~~~A~~Al~~G~--------------------EdLA-r~Al~~k~~~~~~~~~l~~~~~~~~~~v~~l~~~l 122 (219)
T TIGR02977 64 LEAQVADWQEKAELALSKGR--------------------EDLA-RAALIEKQKAQELAEALERELAAVEETLAKLQEDI 122 (219)
T ss_pred HHHHHHHHHHHHHHHHHCCC--------------------HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556666666666632 2233 33445888888888888888888888888888888
Q ss_pred HHHHHHHHHHH
Q 001810 306 DRLNEVAEKAQ 316 (1010)
Q Consensus 306 ~~l~~~~~~a~ 316 (1010)
.+|..+-+.++
T Consensus 123 ~~L~~ki~~~k 133 (219)
T TIGR02977 123 AKLQAKLAEAR 133 (219)
T ss_pred HHHHHHHHHHH
Confidence 88877665543
No 441
>PRK14475 F0F1 ATP synthase subunit B; Provisional
Probab=22.46 E-value=8.8e+02 Score=25.12 Aligned_cols=78 Identities=18% Similarity=0.110 Sum_probs=0.0
Q ss_pred hhHHHHHhhhHHHHHHHHHhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhhh
Q 001810 267 DGLLLAAENDIKECQANLANCETELRRLQSKKEELQKEVDRLNEVAEKAQMNALKAEEDVANIMLLAEQAVAFEIEATQR 346 (1010)
Q Consensus 267 ~~~~~~a~~~~~~~~~~l~~~~~~l~~~~~~~~~lq~~~~~l~~~~~~a~~~a~~a~~~~~~~m~~ae~av~~e~ea~~~ 346 (1010)
...+..|++--++.+..+++++.+|+..+.+-.+.-++..+--+ +..+..-.+|+++...+..-|++.+..|-+.+..
T Consensus 47 ~~~l~~Ae~~k~eAe~~~~~~e~~L~~A~~ea~~Ii~~A~~~a~--~~~~~~~~~A~~ea~~~~~~A~~~I~~e~~~a~~ 124 (167)
T PRK14475 47 QAELDEAQRLREEAQALLADVKAEREEAERQAAAMLAAAKADAR--RMEAEAKEKLEEQIKRRAEMAERKIAQAEAQAAA 124 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 442
>TIGR01614 PME_inhib pectinesterase inhibitor domain. This model describes a plant domain of about 200 amino acids, characterized by four conserved Cys residues, shown in a pectinesterase inhibitor from Kiwi to form two disulfide bonds: first to second and third to fourth. Roughly half the members of this family have the region described by this model followed immediately by a pectinesterase domain, pfam01095. This suggests that the pairing of the enzymatic domain and its inhibitor reflects a conserved regulatory mechanism for this enzyme family.
Probab=22.39 E-value=5.7e+02 Score=26.11 Aligned_cols=74 Identities=22% Similarity=0.246 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCcccccCCCCcchhhHHHHHhhhHHHHHHHHHhhHHHHHHHh-
Q 001810 217 KEAVHKATMALSLAEARLQVAIESLQDVKQEDDYPEGSTEDDAKSDGKEEDGLLLAAENDIKECQANLANCETELRRLQ- 295 (1010)
Q Consensus 217 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~l~~~~~~l~~~~- 295 (1010)
|.+.+.-......|-.+|+.|.+++...+ ...++........+...|++.++...
T Consensus 95 ~~al~~C~~~y~~a~~~L~~a~~~l~~~~------------------------~~d~~~~ls~a~~~~~tC~d~f~~~~~ 150 (178)
T TIGR01614 95 KSALEDCVELYSDAVDALDKALASLKSKD------------------------YSDAETWLSSALTDPSTCEDGFEELGG 150 (178)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcc------------------------hhHHHHHHHHHHcccchHHHHhccCCC
Confidence 44455445555556666666666666311 23355555666677788888887654
Q ss_pred hhHHHHHHHHHHHHHHHHH
Q 001810 296 SKKEELQKEVDRLNEVAEK 314 (1010)
Q Consensus 296 ~~~~~lq~~~~~l~~~~~~ 314 (1010)
..+..+.+....+.+++.-
T Consensus 151 ~~~~~l~~~~~~~~~l~s~ 169 (178)
T TIGR01614 151 IVKSPLTKRNNNVKKLSSI 169 (178)
T ss_pred CccchHHHHHHHHHHHHHH
Confidence 3455666665555555443
No 443
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=22.18 E-value=5.3e+02 Score=28.19 Aligned_cols=42 Identities=24% Similarity=0.457 Sum_probs=30.9
Q ss_pred hHHHHHhhhHHHHHHHHHhhHHHHHHHhhhHHHHHHHHHHHH
Q 001810 268 GLLLAAENDIKECQANLANCETELRRLQSKKEELQKEVDRLN 309 (1010)
Q Consensus 268 ~~~~~a~~~~~~~~~~l~~~~~~l~~~~~~~~~lq~~~~~l~ 309 (1010)
..+...++-....+..|..|+.||.|.++..+=|+.++.+|.
T Consensus 52 ~~~~~l~~~~~~K~~ELE~ce~ELqr~~~Ea~lLrekl~~le 93 (202)
T PF06818_consen 52 SQIQELQDSLRTKQLELEVCENELQRKKNEAELLREKLGQLE 93 (202)
T ss_pred HHHHHHHHHHHHhhHhHHHhHHHHHHHhCHHHHhhhhhhhhH
Confidence 444455556667778888899999888887777777777765
No 444
>PRK09560 nhaA pH-dependent sodium/proton antiporter; Reviewed
Probab=22.15 E-value=2.9e+02 Score=33.04 Aligned_cols=21 Identities=38% Similarity=0.736 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHhhcccChhhh
Q 001810 874 RGLLLGLFFMTVGMSIDPKLL 894 (1010)
Q Consensus 874 ~~~f~PLFFVlIGl~Ldl~~L 894 (1010)
++.++.+||..+|+.+.-+.+
T Consensus 64 NDgLMaiFFf~vGLEiKrE~~ 84 (389)
T PRK09560 64 NDGLMAVFFLLVGLEIKRELL 84 (389)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 589999999999999875443
No 445
>TIGR00915 2A0602 The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family. This family is one of several subfamilies within the scope of pfam model pfam00873.
Probab=22.11 E-value=2e+03 Score=29.25 Aligned_cols=31 Identities=3% Similarity=0.015 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhc-cccccccccc
Q 001810 964 LIPNGISIYLQLIMIFFFFNC-GLLIQHGTKC 994 (1010)
Q Consensus 964 vlvVVlS~IItPiL~~l~~~~-~r~~~~~~~t 994 (1010)
+...++|.++.|.+..++.+. ++...++..+
T Consensus 1010 ~~st~ltL~vvP~ly~~~~~~~~~~~~~~~~~ 1041 (1044)
T TIGR00915 1010 VTATVLAIFFVPLFYVVVRRLFKRKSTKKEPS 1041 (1044)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCcccCCCCCC
Confidence 455677788899998885443 3333344333
No 446
>PHA01750 hypothetical protein
Probab=22.07 E-value=2.6e+02 Score=25.39 Aligned_cols=42 Identities=29% Similarity=0.457 Sum_probs=28.4
Q ss_pred hHHHHHhhhHHHHHHHHHhhHHHHHHHhhhHHHHHHHHHHHHHH
Q 001810 268 GLLLAAENDIKECQANLANCETELRRLQSKKEELQKEVDRLNEV 311 (1010)
Q Consensus 268 ~~~~~a~~~~~~~~~~l~~~~~~l~~~~~~~~~lq~~~~~l~~~ 311 (1010)
.++-.|-+||. |..|.|...|++.+.-|.++||.+|..+..+
T Consensus 30 q~lkdAvkeIV--~~ELdNL~~ei~~~kikqDnl~~qv~eik~k 71 (75)
T PHA01750 30 QALKDAVKEIV--NSELDNLKTEIEELKIKQDELSRQVEEIKRK 71 (75)
T ss_pred HHHHHHHHHHH--HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 34556666664 4567888888888777777777776665543
No 447
>PRK05771 V-type ATP synthase subunit I; Validated
Probab=22.02 E-value=1.7e+03 Score=28.19 Aligned_cols=37 Identities=24% Similarity=0.556 Sum_probs=17.5
Q ss_pred hhhHHHHHHHHHhhHHHHHHHhhhHHHHHHHHHHHHH
Q 001810 274 ENDIKECQANLANCETELRRLQSKKEELQKEVDRLNE 310 (1010)
Q Consensus 274 ~~~~~~~~~~l~~~~~~l~~~~~~~~~lq~~~~~l~~ 310 (1010)
.++..+....+.+..++++++++++.+++++.++|.-
T Consensus 92 ~~~~~~~~~~i~~l~~~~~~L~~~~~~l~~~~~~l~~ 128 (646)
T PRK05771 92 EEELEKIEKEIKELEEEISELENEIKELEQEIERLEP 128 (646)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3344444444444444555555555555555444443
No 448
>PF02996 Prefoldin: Prefoldin subunit; InterPro: IPR004127 This entry comprises of several prefoldin subunits. Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal alpha subunit, eukaryotic prefoldin subunits 3 and 5 and the UXT (ubiquitously expressed transcript) family. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 1FXK_C 2ZDI_C.
Probab=21.95 E-value=1.9e+02 Score=27.78 Aligned_cols=45 Identities=27% Similarity=0.363 Sum_probs=34.9
Q ss_pred chhhHHHHHhhhHHHHHHHHHhhHHHHHHHhhhHHHHHHHHHHHH
Q 001810 265 EEDGLLLAAENDIKECQANLANCETELRRLQSKKEELQKEVDRLN 309 (1010)
Q Consensus 265 ~~~~~~~~a~~~~~~~~~~l~~~~~~l~~~~~~~~~lq~~~~~l~ 309 (1010)
.-++|..--+..++..+..+.+.+.+++.++.+...++..+.+++
T Consensus 74 s~~eA~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~~ 118 (120)
T PF02996_consen 74 SLEEAIEFLKKRIKELEEQLEKLEKELAELQAQIEQLEQTLQQLY 118 (120)
T ss_dssp EHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456777777788888888888888888888888888877777665
No 449
>KOG0526 consensus Nucleosome-binding factor SPN, POB3 subunit [Transcription; Replication, recombination and repair; Chromatin structure and dynamics]
Probab=21.86 E-value=62 Score=39.54 Aligned_cols=7 Identities=57% Similarity=0.657 Sum_probs=4.1
Q ss_pred CCcchhh
Q 001810 480 VNAPKTL 486 (1010)
Q Consensus 480 ~~~~~~~ 486 (1010)
.||||-.
T Consensus 533 pnapkra 539 (615)
T KOG0526|consen 533 PNAPKRA 539 (615)
T ss_pred CCCCccc
Confidence 4677743
No 450
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=21.74 E-value=58 Score=31.82 Aligned_cols=72 Identities=28% Similarity=0.399 Sum_probs=0.0
Q ss_pred hHHHHHHHHHhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH-----HHHHhhhcccH
Q 001810 276 DIKECQANLANCETELRRLQSKKEELQKEVDRLNEVAEKAQMNALKAEEDVANIMLLAEQAVAF-----EIEATQRVNDA 350 (1010)
Q Consensus 276 ~~~~~~~~l~~~~~~l~~~~~~~~~lq~~~~~l~~~~~~a~~~a~~a~~~~~~~m~~ae~av~~-----e~ea~~~~~~~ 350 (1010)
|..+.-.=|..+..++.+++....+|++++.+|+......+-. ++...+.+..|++.... +=||...+++|
T Consensus 19 d~~eVD~fl~~l~~~~~~l~~e~~~L~~~~~~l~~~l~~~~~~----~~~l~~~l~~aq~~a~~~~~~A~~eA~~i~~~A 94 (131)
T PF05103_consen 19 DPDEVDDFLDELAEELERLQRENAELKEEIEELQAQLEELREE----EESLQRALIQAQETADEIKAEAEEEAEEIIEEA 94 (131)
T ss_dssp EHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCT--------------------------------------------
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhH----HHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHH
Q ss_pred H
Q 001810 351 E 351 (1010)
Q Consensus 351 e 351 (1010)
+
T Consensus 95 ~ 95 (131)
T PF05103_consen 95 Q 95 (131)
T ss_dssp -
T ss_pred H
No 451
>PRK14161 heat shock protein GrpE; Provisional
Probab=21.66 E-value=3.6e+02 Score=28.73 Aligned_cols=56 Identities=21% Similarity=0.242 Sum_probs=37.8
Q ss_pred chhhHHHHHhhhHHHHHHHHHhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHh
Q 001810 265 EEDGLLLAAENDIKECQANLANCETELRRLQSKKEELQKEVDRLNEVAEKAQMNAL 320 (1010)
Q Consensus 265 ~~~~~~~~a~~~~~~~~~~l~~~~~~l~~~~~~~~~lq~~~~~l~~~~~~a~~~a~ 320 (1010)
.|++-..-+|++..-.++.+++.+.|+++++++..-+|.|.+-...-+++-+.++.
T Consensus 9 ~~~~~~~~~~~~~~~~~~ei~~l~~e~~elkd~~lR~~AefeN~rkR~~ke~~~~~ 64 (178)
T PRK14161 9 NEQTINDIAEEIVETANPEITALKAEIEELKDKLIRTTAEIDNTRKRLEKARDEAK 64 (178)
T ss_pred cHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666677777777777777777777777777777777777666666555554443
No 452
>PF11992 DUF3488: Domain of unknown function (DUF3488); InterPro: IPR021878 This presumed domain is functionally uncharacterised. This domain is found in bacteria. This domain is typically between 323 to 339 amino acids in length. This domain is found associated with PF01841 from PFAM. This domain has a conserved PLW sequence motif. This domain contains 6 transmembrane helices.
Probab=21.64 E-value=5.2e+02 Score=29.71 Aligned_cols=15 Identities=33% Similarity=0.596 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHhhc
Q 001810 657 AEFGVVFLLFNIGLE 671 (1010)
Q Consensus 657 aeLGLi~LLF~aGLE 671 (1010)
.+.++.++++..++.
T Consensus 78 ~~~~v~lL~~l~~lK 92 (325)
T PF11992_consen 78 LDAGVALLLLLLALK 92 (325)
T ss_pred HHHHHHHHHHHHHHH
Confidence 345555555555554
No 453
>PF11839 DUF3359: Protein of unknown function (DUF3359); InterPro: IPR021793 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 80 amino acids in length.
Probab=21.58 E-value=4.2e+02 Score=25.72 Aligned_cols=73 Identities=25% Similarity=0.282 Sum_probs=49.6
Q ss_pred HHhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHH
Q 001810 284 LANCETELRRLQSKKEELQKEVDRLNEVAEKAQMNALKAEEDVANIMLLAEQAVAFEIEATQRVNDAEIALQRAEK 359 (1010)
Q Consensus 284 l~~~~~~l~~~~~~~~~lq~~~~~l~~~~~~a~~~a~~a~~~~~~~m~~ae~av~~e~ea~~~~~~~e~~l~~~~~ 359 (1010)
|.-|-.-=+..|.+.+++|..++.++..+..||-.|..|-.-.-..+.-|++|-+.=.+|-|..+++ -+|++.
T Consensus 16 ~~GCAsts~~~~~~~d~~~~~a~~a~~~a~~a~~~A~~A~~~AdeA~~kA~~A~aaA~~Aqq~A~eA---nek~~R 88 (96)
T PF11839_consen 16 LAGCASTSDEDQKALDEAQSTAEQAQATAASAQSAAASAQQRADEAASKADAALAAAEAAQQTADEA---NEKADR 88 (96)
T ss_pred HhHccCCcHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHH
Confidence 4455442223345667888888888888888888888877777777888888877777777765544 445443
No 454
>PF01032 FecCD: FecCD transport family; InterPro: IPR000522 This is a subfamily of bacterial binding-protein-dependent transport systems family, and includes transport system permease proteins involved in the transport across the membrane of several compounds. This entry contains the inner components of this multicomponent transport system.; GO: 0005215 transporter activity, 0016020 membrane; PDB: 4DBL_A 1L7V_B 2QI9_B 2NQ2_A.
Probab=21.58 E-value=1.3e+03 Score=26.59 Aligned_cols=17 Identities=12% Similarity=0.135 Sum_probs=12.6
Q ss_pred CCchHHHHHHHHHhhcc
Q 001810 625 GGSPVLGYLAAGILIGP 641 (1010)
Q Consensus 625 gLP~vVG~ILaGILLGP 641 (1010)
|+|+++.-+++|..++-
T Consensus 42 RlPR~l~a~l~G~~La~ 58 (311)
T PF01032_consen 42 RLPRILAAILVGAALAL 58 (311)
T ss_dssp CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHH
Confidence 67777777777777773
No 455
>PRK14148 heat shock protein GrpE; Provisional
Probab=21.54 E-value=6.2e+02 Score=27.47 Aligned_cols=86 Identities=24% Similarity=0.276 Sum_probs=0.0
Q ss_pred CCCcccccCCCCcchhhHHHHHhhhHHHHHHHHHhh--HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhh----hHHH
Q 001810 252 EGSTEDDAKSDGKEEDGLLLAAENDIKECQANLANC--ETELRRLQSKKEELQKEVDRLNEVAEKAQMNALK----AEED 325 (1010)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~l~~~--~~~l~~~~~~~~~lq~~~~~l~~~~~~a~~~a~~----a~~~ 325 (1010)
++|+..|..-|+ ++...-.---.+|+.++.+- +.++..++.+.++|++|++.|.+.--+++.+..+ ++.+
T Consensus 5 ~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~e~~~~~~e~~~l~~~l~~l~~e~~elkd~~lR~~Ae~eN~rKR~~rE 80 (195)
T PRK14148 5 EKSNVEDKSLDI----ETAAQVETAQESASGALEELSVEEQLERAKDTIKELEDSCDQFKDEALRAKAEMENIRKRAERD 80 (195)
T ss_pred hhccccccccch----HHHHHhhhcchhhhhhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHH
Q 001810 326 VANIMLLAEQAVAFEI 341 (1010)
Q Consensus 326 ~~~~m~~ae~av~~e~ 341 (1010)
...+..-|=+-++.+|
T Consensus 81 ~e~~~~~a~~~~~~~L 96 (195)
T PRK14148 81 VSNARKFGIEKFAKEL 96 (195)
T ss_pred HHHHHHHHHHHHHHHH
No 456
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=21.50 E-value=2.1e+03 Score=29.22 Aligned_cols=46 Identities=26% Similarity=0.315 Sum_probs=37.2
Q ss_pred cchhhHHHHHhhhHHHHHHHHHhhHHHHHHHhhhHHHHHHHHHHHH
Q 001810 264 KEEDGLLLAAENDIKECQANLANCETELRRLQSKKEELQKEVDRLN 309 (1010)
Q Consensus 264 ~~~~~~~~~a~~~~~~~~~~l~~~~~~l~~~~~~~~~lq~~~~~l~ 309 (1010)
.+-.+..+.++.+|+.|...|-|-..|+.|++.+|++|.+...+.+
T Consensus 477 ~Q~~~et~el~~~iknlnk~L~~r~~elsrl~a~~~elkeQ~kt~~ 522 (1195)
T KOG4643|consen 477 DQLEAETEELLNQIKNLNKSLNNRDLELSRLHALKNELKEQYKTCD 522 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666777888999999999999999999999999876655443
No 457
>KOG2435 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.39 E-value=71 Score=35.89 Aligned_cols=66 Identities=17% Similarity=0.229 Sum_probs=44.3
Q ss_pred CCccccc-cccccccchhccccccCccCcccccccccccccccccccccccccCCCcceeEEecCCCCccc-cccccCC
Q 001810 9 QPNVFEG-TRYRISDRLINSRFRYGGFGYNVSNRRIVSKTRSTRNLSKSISYAGCSKSSLVFRGNSDANLW-GLYTCKS 85 (1010)
Q Consensus 9 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 85 (1010)
|..+||| ++-+.|.--+..|.+||+. +.|+.|+..+-+.|-+..-.++.+|-.+|||-| --+++..
T Consensus 156 ~~alf~G~~ss~~~kdg~i~RsGyc~M-----------rs~~RkaF~rk~~~dw~qfn~L~LrvRGDGRsy~inihte~ 223 (323)
T KOG2435|consen 156 QSALFYGTLSSEAPKDGEITRSGYCAM-----------RSRPRKAFERKMSYDWSQFNTLYLRVRGDGRSYMINIHTET 223 (323)
T ss_pred cceeeccccccccccCcceeeeeeeee-----------eccchhhhcceecccccccceEEEEEecCCceEEEEecCcc
Confidence 5678999 4445444333445666663 235778888888999988888888877888877 3333333
No 458
>PRK14162 heat shock protein GrpE; Provisional
Probab=21.31 E-value=3.2e+02 Score=29.63 Aligned_cols=17 Identities=24% Similarity=0.251 Sum_probs=8.1
Q ss_pred HHHHHHHhhcCCCCccc
Q 001810 353 ALQRAEKSLSNSSVDIS 369 (1010)
Q Consensus 353 ~l~~~~~~~~~~~~~~~ 369 (1010)
.++.-.+.|...++...
T Consensus 125 i~k~l~~vL~~~GV~~I 141 (194)
T PRK14162 125 TLDHLVKALKDHGVTEI 141 (194)
T ss_pred HHHHHHHHHHHCCCEEe
Confidence 34444445555555444
No 459
>PRK12472 hypothetical protein; Provisional
Probab=21.21 E-value=1.4e+03 Score=28.33 Aligned_cols=30 Identities=17% Similarity=0.223 Sum_probs=18.5
Q ss_pred HHHHhhhHHHHHHHHHhhHHHHHHHhhhHH
Q 001810 270 LLAAENDIKECQANLANCETELRRLQSKKE 299 (1010)
Q Consensus 270 ~~~a~~~~~~~~~~l~~~~~~l~~~~~~~~ 299 (1010)
|..++..+....+.|...+..|..-+....
T Consensus 227 l~~~e~~~~~a~~~l~~adk~l~~a~~d~~ 256 (508)
T PRK12472 227 LRKLERAKARADAELKRADKALAAAKTDEA 256 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccchh
Confidence 344556666666777777777766654433
No 460
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=21.20 E-value=8.7e+02 Score=25.97 Aligned_cols=32 Identities=34% Similarity=0.551 Sum_probs=19.7
Q ss_pred HhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 001810 285 ANCETELRRLQSKKEELQKEVDRLNEVAEKAQ 316 (1010)
Q Consensus 285 ~~~~~~l~~~~~~~~~lq~~~~~l~~~~~~a~ 316 (1010)
.+.+.++..+..++.+|++++..|....+..+
T Consensus 123 ~~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~e 154 (189)
T PF10211_consen 123 QELEEEIEELEEEKEELEKQVQELKNKCEQLE 154 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555666666666666666666666655554
No 461
>TIGR00366 conserved hypothetical integral membrane protein.
Probab=21.17 E-value=1.6e+03 Score=27.52 Aligned_cols=24 Identities=17% Similarity=0.148 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccc
Q 001810 964 LIPNGISIYLQLIMIFFFFNCGLL 987 (1010)
Q Consensus 964 vlvVVlS~IItPiL~~l~~~~~r~ 987 (1010)
+.++++.+++.|++.++..|+++.
T Consensus 191 l~~~~~~~v~~~l~~~~~~P~~~~ 214 (438)
T TIGR00366 191 LIITAIIIVFLPFITYMMMPKRGE 214 (438)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCC
Confidence 445555667788888887776554
No 462
>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B. CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.
Probab=21.16 E-value=1.1e+03 Score=25.90 Aligned_cols=94 Identities=19% Similarity=0.217 Sum_probs=0.0
Q ss_pred hhHHHHHhhhHHHHHHHHHhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhh-
Q 001810 267 DGLLLAAENDIKECQANLANCETELRRLQSKKEELQKEVDRLNEVAEKAQMNALKAEEDVANIMLLAEQAVAFEIEATQ- 345 (1010)
Q Consensus 267 ~~~~~~a~~~~~~~~~~l~~~~~~l~~~~~~~~~lq~~~~~l~~~~~~a~~~a~~a~~~~~~~m~~ae~av~~e~ea~~- 345 (1010)
...+..|++-..+.+..+.+-+.+|+..+.+..++-++..+--+.-....++ +|.+++..+..-|.+.+..|.+.+.
T Consensus 42 ~~~l~~Ae~~~~eA~~~~~e~e~~l~~a~~ea~~i~~~A~~eA~~~~~~i~~--~A~~ea~~~~~~a~~~ie~E~~~a~~ 119 (246)
T TIGR03321 42 AGELADADTKKREAEQERREYEEKNEELDQQREVLLTKAKEEAQAERQRLLD--EAREEADEIREKWQEALRREQAALSD 119 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred --hcccHHHHHHHHHHhhc
Q 001810 346 --RVNDAEIALQRAEKSLS 362 (1010)
Q Consensus 346 --~~~~~e~~l~~~~~~~~ 362 (1010)
+-.=+..|++.|+|-+.
T Consensus 120 ~l~~ei~~la~~~A~kil~ 138 (246)
T TIGR03321 120 ELRRRTGAEVFAIARKVLT 138 (246)
T ss_pred HHHHHHHHHHHHHHHHHHH
No 463
>PF07321 YscO: Type III secretion protein YscO; InterPro: IPR009929 This family contains the bacterial type III secretion protein YscO, which is approximately 150 residues long. YscO has been shown to be required for high-level expression and secretion of the anti-host proteins V antigen and Yops in Yersinia pestis [].
Probab=21.04 E-value=9.6e+02 Score=25.02 Aligned_cols=109 Identities=24% Similarity=0.260 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCcccccCCCCcchhhHHHHH-------hhhHHHHHHHH
Q 001810 212 EECIAKEAVHKATMALSLAEARLQVAIESLQDVKQEDDYPEGSTEDDAKSDGKEEDGLLLAA-------ENDIKECQANL 284 (1010)
Q Consensus 212 ~e~~a~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a-------~~~~~~~~~~l 284 (1010)
++-.|..|+..+.+++.-|.+.++-|..++..-+. --.++++.+.+. ..||.+++..+
T Consensus 12 R~drAe~a~~~q~~~l~~a~~~~~~a~~~l~dyr~---------------wr~~ee~rly~~~~~~~v~~kele~~~~qv 76 (152)
T PF07321_consen 12 REDRAERALRRQERRLQEARAALQQAEQELADYRQ---------------WRQREEERLYAEIQGKVVSLKELEKWQQQV 76 (152)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHhHhhHHHHHHHHHHH
Confidence 34456777777778888888888777777766431 112233333322 35566666655
Q ss_pred HhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 001810 285 ANCETELRRLQSKKEELQKEVDRLNEVAEKAQMNALKAEEDVANIMLLAEQ 335 (1010)
Q Consensus 285 ~~~~~~l~~~~~~~~~lq~~~~~l~~~~~~a~~~a~~a~~~~~~~m~~ae~ 335 (1010)
+-..+.=+++....+++.+.+..-.+..+.++-....|--.+.-+-.|+++
T Consensus 77 ~~Lr~~e~~le~~~~~a~~~~~~e~~~l~~a~~~~~~a~r~~eKf~eL~~~ 127 (152)
T PF07321_consen 77 ASLREREAELEQQLAEAEEQLEQERQALEEARKQLQQARRQQEKFAELAEQ 127 (152)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555566666666666666666666666665555555555544
No 464
>PRK12911 bifunctional preprotein translocase subunit SecD/SecF; Reviewed
Probab=20.98 E-value=5.5e+02 Score=35.29 Aligned_cols=37 Identities=24% Similarity=0.271 Sum_probs=16.7
Q ss_pred HHHHHhcCCCh----HHHHHHhhhcccCcHHHHHH-HHHHcC
Q 001810 701 LVAHFVSGLPG----PASIVIGNGLALSSTAVVLQ-VLQERG 737 (1010)
Q Consensus 701 ~la~~l~Gls~----~~ALLLGaILSaTSpAVvv~-IL~elg 737 (1010)
+.+++++|+++ ..++++.+.++.=+..++.- +-.++.
T Consensus 949 Lg~LsLlGitLTLpgIAGIILlIGmAVDdnIVIfERIREELr 990 (1403)
T PRK12911 949 WAALQYLDAPLTLSGLAGIVLAMGMAVDANVLVFERIREEYL 990 (1403)
T ss_pred HHHHHHHCCCchHHHHHHHHHHHHHhhcCCEEEehHHHHHHH
Confidence 34445556654 34444444444444444443 334433
No 465
>PRK13021 secF preprotein translocase subunit SecF; Reviewed
Probab=20.87 E-value=1.3e+03 Score=26.58 Aligned_cols=36 Identities=14% Similarity=0.190 Sum_probs=18.2
Q ss_pred HHHHHHhcCCChH----HHHHHhhhcccCcHHHHHHHHHH
Q 001810 700 GLVAHFVSGLPGP----ASIVIGNGLALSSTAVVLQVLQE 735 (1010)
Q Consensus 700 g~la~~l~Gls~~----~ALLLGaILSaTSpAVvv~IL~e 735 (1010)
++.+++++|++.. .+++.-...+.-+..+++.-++|
T Consensus 166 ~l~~l~l~g~~l~~~~iaglLtliG~svnd~IVi~drire 205 (297)
T PRK13021 166 VLAFFALTQMEFNLTVLAAVLAILGYSLNDSIIIADRIRE 205 (297)
T ss_pred HHHHHHHHCCCccHHHHHHHHHHHHHeeeCCEEEeeHHHH
Confidence 3334445566543 33443334566666666555553
No 466
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=20.77 E-value=93 Score=27.07 Aligned_cols=23 Identities=30% Similarity=0.598 Sum_probs=17.6
Q ss_pred hhHHHHHHHhhhHHHHHHHHHHH
Q 001810 286 NCETELRRLQSKKEELQKEVDRL 308 (1010)
Q Consensus 286 ~~~~~l~~~~~~~~~lq~~~~~l 308 (1010)
+...++++++.+.+++|||+++|
T Consensus 45 ~~r~~~~~~~k~l~~le~e~~~l 67 (68)
T PF06305_consen 45 RLRRRIRRLRKELKKLEKELEQL 67 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 44567888888888888888765
No 467
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=20.67 E-value=3.2e+02 Score=30.29 Aligned_cols=27 Identities=37% Similarity=0.570 Sum_probs=11.8
Q ss_pred HHHhhHHHHHHHhhhHHHHHHHHHHHH
Q 001810 283 NLANCETELRRLQSKKEELQKEVDRLN 309 (1010)
Q Consensus 283 ~l~~~~~~l~~~~~~~~~lq~~~~~l~ 309 (1010)
.+.+|...|..+|..|+||-+|..+|+
T Consensus 136 ~~ee~kekl~E~~~EkeeL~~eleele 162 (290)
T COG4026 136 DYEELKEKLEELQKEKEELLKELEELE 162 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444433
No 468
>COG3006 MukF Uncharacterized protein involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=20.59 E-value=2.6e+02 Score=32.01 Aligned_cols=81 Identities=25% Similarity=0.214 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhcc-------CCCCCCCCc-ccccCCCC--cchhhHHHHHhhhH-----HHHHHHHHhh
Q 001810 223 ATMALSLAEARLQVAIESLQDVKQ-------EDDYPEGST-EDDAKSDG--KEEDGLLLAAENDI-----KECQANLANC 287 (1010)
Q Consensus 223 ~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~~~~~-~~~~~~~~--~~~~~~~~~a~~~~-----~~~~~~l~~~ 287 (1010)
-.|-||+---.+|.|.||.|-.-. +-.|..-|- |--...|. +--+|-..+-++|| ||-|++.++|
T Consensus 125 ls~qlsivade~qra~eaaeegg~e~hw~rnvfaplkysvaeifdsidl~qr~mde~qqsvke~ia~ll~kdwraai~sc 204 (440)
T COG3006 125 LSMQLSIVADELQRAADAAEEGGDEFHWHRNVFAPLKYSVAEIFDSIDLTQRLMDEQQQSVKDDIAQLLNKDWRAAISSC 204 (440)
T ss_pred hhhhhHHHHHHHHHHHHHHHhccchhhhhhccchhhhhhHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 456678888889999998876311 111111111 11111122 12245556666776 5779999999
Q ss_pred HHHHHHHhhhHHHHHH
Q 001810 288 ETELRRLQSKKEELQK 303 (1010)
Q Consensus 288 ~~~l~~~~~~~~~lq~ 303 (1010)
|.=|.+.-....|||.
T Consensus 205 e~ll~etsg~lrelqd 220 (440)
T COG3006 205 ELLLSETSGTLRELQD 220 (440)
T ss_pred HHHHHhccchHHHHHH
Confidence 9988888877777774
No 469
>cd07656 F-BAR_srGAP The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Slit-Robo GTPase Activating Proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Slit-Robo GTPase Activating Proteins (srGAPs) are Rho GAPs that interact with Robo1, the transmembrane receptor of Slit proteins. Slit proteins are secreted proteins that control axon guidance and the migration of neurons and leukocytes. Vertebrates contain three isoforms of srGAPs, all of which are expressed during embryonic and early development in the nervous system but with different localization and timing. srGAPs contain an N-terminal F-BAR domain, a Rho GAP domain, and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=20.53 E-value=1.1e+03 Score=26.31 Aligned_cols=83 Identities=16% Similarity=0.179 Sum_probs=42.3
Q ss_pred HHHHHHHHhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH---------------------HHHHHHHHH
Q 001810 278 KECQANLANCETELRRLQSKKEELQKEVDRLNEVAEKAQMNALKAEEDVA---------------------NIMLLAEQA 336 (1010)
Q Consensus 278 ~~~~~~l~~~~~~l~~~~~~~~~lq~~~~~l~~~~~~a~~~a~~a~~~~~---------------------~~m~~ae~a 336 (1010)
|.|......+..||.+.-...+-..|.-.++..-|++|+..+.+||.|-- +.=..-++.
T Consensus 113 Kk~~e~~~~lq~el~~~~~eL~k~kK~Y~~~~~ea~~A~~K~~~ae~~~~k~~~~~~~~~~~~~~~~~~~~~~eK~k~k~ 192 (241)
T cd07656 113 KKCREIGSQLHDELLRVLNELQTAMKTYHTYHAESKSAERKLKEAEKQEEKQEQSPEKKLERSRSSKKIEKEVEKRQAKY 192 (241)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccchhHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444445555555555555555555531 111233444
Q ss_pred HHHHHHHhhhcccHHHHHHHHHHh
Q 001810 337 VAFEIEATQRVNDAEIALQRAEKS 360 (1010)
Q Consensus 337 v~~e~ea~~~~~~~e~~l~~~~~~ 360 (1010)
..-.++++..=||--++|+.|-+.
T Consensus 193 ~~~~~k~~~akNeYll~l~~aN~~ 216 (241)
T cd07656 193 SEAKLKCTKARNEYLLNLAAANAT 216 (241)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555566666667777788777553
No 470
>PHA03247 large tegument protein UL36; Provisional
Probab=20.51 E-value=3.1e+03 Score=30.89 Aligned_cols=98 Identities=17% Similarity=0.252 Sum_probs=60.9
Q ss_pred hhhHHHHHhhhHHHHHHHHHhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH-----HHHHHHH
Q 001810 266 EDGLLLAAENDIKECQANLANCETELRRLQSKKEELQKEVDRLNEVAEKAQMNALKAEEDVANIMLLA-----EQAVAFE 340 (1010)
Q Consensus 266 ~~~~~~~a~~~~~~~~~~l~~~~~~l~~~~~~~~~lq~~~~~l~~~~~~a~~~a~~a~~~~~~~m~~a-----e~av~~e 340 (1010)
+|--....++|..+...++..-+.+-+.-..|.+-+= +|+.+.++..+...-|+.||.-.|= =+.+|.=
T Consensus 1565 ~e~~~~~~rrDl~~ak~al~~a~~~r~eat~Ra~~~L------~evv~a~~a~~r~~a~~LaNLKnLLRltp~P~~ia~a 1638 (3151)
T PHA03247 1565 AEYVAFVARRDLAEAKDALVRAKQQRAEATDRVTAAL------REALAAHERRAQSEAESLANLKTLLRVAAIPATAAKT 1638 (3151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHhhhhhccCCCHHHHHH
Confidence 3444557788888888888777766666666655554 4444555555556667888876654 2455555
Q ss_pred HHHhhhccc----HHHHHHHHHHhhcCCCCccch
Q 001810 341 IEATQRVND----AEIALQRAEKSLSNSSVDISE 370 (1010)
Q Consensus 341 ~ea~~~~~~----~e~~l~~~~~~~~~~~~~~~~ 370 (1010)
++-+.-++| ++.=|.++||+ ..+|+.+.|
T Consensus 1639 iDkA~S~~dIVtQaALLL~~vEea-~ELDvqAVe 1671 (3151)
T PHA03247 1639 LDQARSVAEIVDQIELLLEQTEKA-AELDVAAVD 1671 (3151)
T ss_pred hhhcccHHHHHHHHHHHHHHhhhc-cccCHHHHH
Confidence 554444443 55667777777 666665543
No 471
>PF00430 ATP-synt_B: ATP synthase B/B' CF(0); InterPro: IPR002146 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunits B and B' from the F0 complex in F-ATPases found in chloroplasts and in bacterial plasma membranes. The B subunits are part of the peripheral stalk that links the F1 and F0 complexes together, and which acts as a stator to prevent certain subunits from rotating with the central rotary element. The peripheral stalk differs in subunit composition between mitochondrial, chloroplast and bacterial F-ATPases. In bacterial and chloroplast F-ATPases, the peripheral stalk is composed of one copy of the delta subunit (homologous to OSCP in mitochondria), and two copies of subunit B in bacteria, or one copy each of subunits B and B' in chloroplasts and photosynthetic bacteria []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0045263 proton-transporting ATP synthase complex, coupling factor F(o); PDB: 1L2P_A 2KHK_A 1B9U_A.
Probab=20.50 E-value=7.8e+02 Score=23.77 Aligned_cols=21 Identities=33% Similarity=0.379 Sum_probs=10.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHH
Q 001810 322 AEEDVANIMLLAEQAVAFEIE 342 (1010)
Q Consensus 322 a~~~~~~~m~~ae~av~~e~e 342 (1010)
|++++..++.-|++-+..|-+
T Consensus 89 a~~~~~~~~~~a~~~i~~e~~ 109 (132)
T PF00430_consen 89 AEKEAERIIEQAEAEIEQEKE 109 (132)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555444444433
No 472
>TIGR02359 thiW thiW protein. Levels of thiamine pyrophosphate (TPP) or thiamine regulate transcription or translation of a number of thiamine biosynthesis, salvage, or transport genes in a wide range of prokaryotes. The mechanism involves direct binding, with no protein involved,to a structural element called THI found in the untranslated upstream region of thiamine metabolism gene operons. This element is called a riboswitch and is seen also for other metabolites such as FMN and glycine. This protein family consists of proteins identified in operons controlled by the THI riboswitch and designated ThiW. The hydrophobic nature of this protein and reconstructed metabolic background suggests that this protein acts in transport of a thiazole precursor of thiamine.
Probab=20.50 E-value=1e+03 Score=25.06 Aligned_cols=15 Identities=33% Similarity=0.740 Sum_probs=12.6
Q ss_pred hHHHHHHHHHhhccc
Q 001810 628 PVLGYLAAGILIGPY 642 (1010)
Q Consensus 628 ~vVG~ILaGILLGP~ 642 (1010)
.-++-+++|+++||.
T Consensus 34 ~~i~~vlaavllGP~ 48 (160)
T TIGR02359 34 QHFVNVIAGVLLGPW 48 (160)
T ss_pred hHHHHHHHHHHHchH
Confidence 357889999999994
No 473
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=20.32 E-value=8.7e+02 Score=24.25 Aligned_cols=45 Identities=13% Similarity=0.074 Sum_probs=27.1
Q ss_pred cHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhchhHHHH
Q 001810 150 TDELRELLMNAMKELEVAQLNSTMFEEKAQRISEAAIALKDEAAN 194 (1010)
Q Consensus 150 ~~~l~~~l~~a~~~le~a~~~~~~~e~~~~~~~~~ai~~~d~~~~ 194 (1010)
++.|+.-++.++.+.+.+.-.-....+..+.-++.|-.+++.|..
T Consensus 5 ~~~l~~e~~~~~~~~~~~~~~~~~~~~dl~~q~~~a~~Aq~~YE~ 49 (132)
T PF07926_consen 5 LSSLQSELQRLKEQEEDAEEQLQSLREDLESQAKIAQEAQQKYER 49 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666666666666666666666665555555443
No 474
>PRK09859 multidrug efflux system protein MdtE; Provisional
Probab=20.17 E-value=2.2e+02 Score=33.33 Aligned_cols=19 Identities=26% Similarity=0.102 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 001810 151 DELRELLMNAMKELEVAQL 169 (1010)
Q Consensus 151 ~~l~~~l~~a~~~le~a~~ 169 (1010)
.+++.-++.|+.+++.|+.
T Consensus 95 ~~~~~~l~~a~a~l~~a~a 113 (385)
T PRK09859 95 APLQAELNSAKGSLAKALS 113 (385)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4677778888888877754
No 475
>PRK14726 bifunctional preprotein translocase subunit SecD/SecF; Provisional
Probab=20.14 E-value=9.4e+02 Score=31.80 Aligned_cols=24 Identities=4% Similarity=0.033 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 001810 793 AAVAITAIIAGGRLLLRPIYKQIA 816 (1010)
Q Consensus 793 vilgiii~llvg~~llr~llr~i~ 816 (1010)
+++|++++.+...|+..|++.|+.
T Consensus 805 li~Gli~gt~sSifvAspll~~~~ 828 (855)
T PRK14726 805 MLFGVAVGTFSSIYIAAPVLIVFK 828 (855)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344555555556667777776664
No 476
>PRK09859 multidrug efflux system protein MdtE; Provisional
Probab=20.09 E-value=3.6e+02 Score=31.50 Aligned_cols=18 Identities=17% Similarity=-0.036 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 001810 223 ATMALSLAEARLQVAIES 240 (1010)
Q Consensus 223 ~~~~~~~a~~~~~~~~~~ 240 (1010)
|...+.+|+..+++..+-
T Consensus 111 a~a~~~~a~~~~~R~~~L 128 (385)
T PRK09859 111 ALSTASNARITFNRQASL 128 (385)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344455666666665543
No 477
>PRK05274 2-keto-3-deoxygluconate permease; Provisional
Probab=20.04 E-value=1.9e+02 Score=33.69 Aligned_cols=74 Identities=19% Similarity=0.192 Sum_probs=44.2
Q ss_pred HHHHHHHHhhcccccccccCchhHHHHHHHHHHHHHHHHhhcCChhHHHhchhhHHHHHHHHHHHHHHHHHHHHHHhc
Q 001810 630 LGYLAAGILIGPYGLSIIRHVHGTKAIAEFGVVFLLFNIGLELSVERLSSMKKYVFGLGSAQVLVTAVVVGLVAHFVS 707 (1010)
Q Consensus 630 VG~ILaGILLGP~gLglI~~~~~le~LaeLGLi~LLF~aGLEidl~~Lrr~~k~il~LAlv~vllt~~~Vg~la~~l~ 707 (1010)
+.-++.|+++|+.--. .+ +....=..+.+.+..|..|..+++..+...+...+++++.-++++. .+++....++
T Consensus 177 llplliG~~lgnl~~~-l~--~~~~~Gi~~lLp~~~~~lG~~l~lq~i~~~G~~GilL~~~~~~~t~-~~~~~~~Rl~ 250 (326)
T PRK05274 177 VLPLLVGFILGNLDPE-LR--QFLGKAVPVLIPFFAFALGNGIDLGTIITAGLSGILLGVAVVAVTG-IPLYLADRLI 250 (326)
T ss_pred HHHHHHHHHHHhHHHh-hH--HHhcCCcEEEHHHHHHHHhcceeHhHHHhcCCcchhhhhhHhhccc-hhhHhHhhee
Confidence 4567778888862111 11 0000001124566777899999999998888777777777666653 3344444555
No 478
>PF02667 SCFA_trans: Short chain fatty acid transporter; InterPro: IPR006160 Members of this family may be short chain fatty acid transporters although there has been no experimental characterisation of this function.
Probab=20.03 E-value=1.7e+03 Score=27.41 Aligned_cols=23 Identities=9% Similarity=0.021 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhccc
Q 001810 964 LIPNGISIYLQLIMIFFFFNCGL 986 (1010)
Q Consensus 964 vlvVVlS~IItPiL~~l~~~~~r 986 (1010)
+..+++..++.|++..+..|+++
T Consensus 194 li~~~~~~v~~pli~~~m~P~~~ 216 (453)
T PF02667_consen 194 LIIVVVLLVVLPLINYLMAPKPE 216 (453)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCc
Confidence 33445556678888888777765
Done!