Query 001810
Match_columns 1010
No_of_seqs 199 out of 1585
Neff 5.2
Searched_HMMs 29240
Date Tue Mar 26 16:12:15 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/001810.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1107-1111//hhsearch_pdb/001810hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1zcd_A Na(+)/H(+) antiporter 1 1.0 1 1 190.8 15.2 335 607-983 15-385 (388)
2 3zux_A Transporter, ASBTNM; tr 1.0 1 1 51.0 29.1 285 630-985 21-314 (332)
3 3vkg_A Dynein heavy chain, cyt 1.0 1 1 37.7 17.7 59 266-324 2012-2070(3245)
4 2k3c_A TMIX peptide; membrane 1.0 1 1 32.4 -8.1 30 831-860 2-31 (33)
5 3vkg_A Dynein heavy chain, cyt 1.0 1 1 30.7 25.8 54 264-317 2017-2070(3245)
6 2l0e_A Sodium/hydrogen exchang 1.0 1 1 30.6 0.3 29 710-738 2-30 (33)
7 1i84_S Smooth muscle myosin he 1.0 1 1 30.4 10.6 13 46-58 182-194 (1184)
8 1i84_S Smooth muscle myosin he 1.0 1 1 29.8 10.8 15 486-500 611-625 (1184)
9 2akf_A Coronin-1A; coiled coil 1.0 1 1 24.5 3.5 28 285-312 2-29 (32)
10 2htg_A NHE-1, NHE1 isoform of 1.0 1 1 22.6 -3.0 24 739-762 2-25 (28)
No 1
>1zcd_A Na(+)/H(+) antiporter 1; membrane protein; 3.45A {Escherichia coli} PDB: 3fi1_A
Probab=1.00 E-value=1 Score=190.76 Aligned_cols=335 Identities=19% Similarity=0.183 Sum_probs=226.4
Q ss_pred HHHHHHHHHHHHHHHHCCCCC-HHHHHHHHHH----HHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHH----
Q ss_conf 999999999999998549993-6999999999----6524566434670139999999999999999652793689----
Q 001810 607 LWLLLASVIFVPIFQKIPGGS-PVLGYLAAGI----LIGPYGLSIIRHVHGTKAIAEFGVVFLLFNIGLELSVERL---- 677 (1010)
Q Consensus 607 liLLllA~Ilg~Ll~Rl~giP-~vIg~ILaGI----ILGP~~LglI~~~~~ie~LaeLGLilLLF~AGLEIdl~~L---- 677 (1010)
.++++++.+++.+....| .+ ... +-+... -+|+ +++ +......+.+-.+.+++|.+|+|++.+.+
T Consensus 15 g~~L~~~~~~al~~aNs~-~~~~~y-~~~~~~~~~~~~g~--~~~--~~~l~~windglm~lFff~vGLEik~e~l~G~L 88 (388)
T 1zcd_A 15 GIILIIAAILAMIMANSG-ATSGWY-HDFLETPVQLRVGS--LEI--NKNMLLWINDALMAVFFLLVGLEVKRELMQGSL 88 (388)
T ss_dssp HHHHHHHHHHHHHHHHCS-SSHHHH-HHHTTCEEEEEETT--EEE--EEEHHHHHHHHHHHHHHHHHHHHHHHHHHSTTT
T ss_pred HHHHHHHHHHHHHHHCCC-CCHHHH-HHHHCCCCCEECCC--CCC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH
T ss_conf 999999999999998480-538699-99971624401054--326--786999986574999999999982199843112
Q ss_pred HHCHH--HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCHHHHHHHHHHCCC-CCCHHHHHHHHHHHHH
Q ss_conf 74045--69999999999999999999998409994789988521245739999999987199-8872469999999767
Q 001810 678 SSMKK--YVFGLGSAQVLVTAVVVGLVAHFVSGLPGPASIVIGNGLALSSTAVVLQVLQERGE-STSRHGRATFSVLLFQ 754 (1010)
Q Consensus 678 rr~~k--~il~Lail~vllt~vvVGlia~~llGls~~~ALlLGaiiS~TSpaVvv~IL~Elg~-l~SrigrLiLsaSliN 754 (1010)
++.++ .....++.++++|+ .+ ++.+++..+.+...+.+...||.+.++.++..++. .++..+..+++.+++|
T Consensus 89 ~~~~~a~~p~~aAlgGmivP~-~i----y~~~~~~~~~~~~gw~ip~ATdIAfal~vL~~lg~~~p~~l~~flLalAvvD 163 (388)
T 1zcd_A 89 ASLRQAAFPVIAAIGGMIVPA-LL----YLAFNYADPITREGWAIPAATDIAFALGVLALLGSRVPLALKIFLMALAIID 163 (388)
T ss_dssp SSTTTSHHHHHHHHHHTTTTH-HH----HGGGCCSSTTHHHHTSSSSCCCHHHHHHHHHSSCSSSCSSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HH----HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_conf 224567899999999899999-99----9998148725655569999979999999999997427617999999999999
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
Q ss_conf 79999999999865179888985378899999999999999999999999998899999998510024899999999999
Q 001810 755 DLAVVVLLILIPLISPNSSKGGVGFQAIAEALGVAAVKAAVAITAIIAGGRLLLRPIYKQIAENQNAEIFSANTLLVILG 834 (1010)
Q Consensus 755 Di~aIVLLaIialL~~~~s~g~isl~~I~~~Lg~~ll~vilgiiiillig~~Llrpllr~i~~~~~~ei~i~itLliil~ 834 (1010)
|+.+|+++++.. . ++.++. .+.. .++ .+++..++ .+. ....... +.++ .+.
T Consensus 164 Dl~aiivIAvfy--t-----~~~~~~----~l~~----~~~----~~~~~~~l-----~r~---~v~~~~~-y~~l-gl~ 214 (388)
T 1zcd_A 164 DLGAIIIIALFY--T-----NDLSMA----SLGV----AAV----AIAVLAVL-----NLC---GARRTGV-YILV-GVV 214 (388)
T ss_dssp HHHHHHHHHHHS--C-----CCCCHH----HHHH----HHH----HHHHHHHH-----HHT---TCCCTHH-HHHH-HHH
T ss_pred HHHHHHHHHHHH--C-----CCCCHH----HHHH----HHH----HHHHHHHH-----HHH---CCHHHHH-HHHH-HHH
T ss_conf 999999998777--4-----875389----9999----999----99999999-----886---5345899-9999-999
Q ss_pred HHHHHHHHCHHHHHHHHHHHHHCCCC-----CHHHHHHHHHHHHH-HHHHHHH-HHHHHCCCCHH---HHHHHHHHHHHH
Q ss_conf 99999993235999999999970887-----40577998787299-8999999-99961355813---331010127889
Q 001810 835 TSLLTARAGLSMALGAFLAGLLLAET-----EFSLQVESDIAPYR-GLLLGLF-FMTVGMSIDPK---LLLSNFPVITGA 904 (1010)
Q Consensus 835 ~~llAe~lGlSgvLGAFiAGLiL~~~-----~~~~~L~e~i~~i~-~LLlPIF-FvlIGl~Idl~---~L~~~~~~iili 904 (1010)
.++.++..|+|+.+|+|++|+++|.. +..+++++.++++. .+++|+| |+..|.+++.. .+.. +..+.+
T Consensus 215 ~w~~~~~sGvHatigg~l~Gl~ip~~~~~~~~~~~~le~~l~p~v~~~ilPlFaFanaGv~l~~~~~~~l~~--~~~lgi 292 (388)
T 1zcd_A 215 LWTAVLKSGVHATLAGVIVGFFIPLKEKHGRSPAKRLEHVLHPWVAYLILPLFAFANAGVSLQGVTLDGLTS--ILPLGI 292 (388)
T ss_dssp HHHHTTTSHHHHHHHHHHHHHHSCCCGGGSSCHHHHHHHHHHHHHHHTHHHHHHHHHCCCCCSSSCCCTHHH--HSSTTT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCEEECCCCHHHCCC--HHHHHH
T ss_conf 999999828529999999998546777667898999999989989999999999984582423650664117--399999
Q ss_pred HHHHHHHHHHHHHHHHHHH----------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC--CHHH--HHHHHHHHH
Q ss_conf 9999999999999999960----------9996899999998744799999999998718888--8126--979999999
Q 001810 905 LGLLIGGKTILVALVGRLF----------GVSVISAIRTGLLLAPGGEFAFVAFGEAVNQVCF--QPHT--VFLIPNGIS 970 (1010)
Q Consensus 905 ilvvil~K~I~v~l~~~l~----------gl~~real~iGL~La~rGevaLVla~ials~GiI--s~~~--lIvlvVILS 970 (1010)
++..+++|+++++..++.. +++|++...+|+.++.++++++++++++++.+.. .++. .++.++++|
T Consensus 293 ~~glvvGK~~Gi~~~~~l~~rl~~~~lp~g~~~~~~~~vg~L~gigftmsL~Ia~laf~~~~~~~~~~ak~~il~~s~~s 372 (388)
T 1zcd_A 293 IAGLLIGKPLGISLFCWLALRLKLAHLPEGTTYQQIMVVGILCGIGFTMSIFIASLAFGSVDPELINWAKLGILVGSISS 372 (388)
T ss_dssp THHHHHTTGGGSTTHHHHTSSCTTTCCCCSCCGGGGTTHHHHTTCCHHHHHHHHHHHSTTSSCSSHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999966676999998999999999824205899999998625881556765999999999999
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 9998999999830
Q 001810 971 IYLQLIMIFFFFN 983 (1010)
Q Consensus 971 ~IItPiL~~l~~~ 983 (1010)
.+++|++.++..+
T Consensus 373 ~i~g~~~L~~~~~ 385 (388)
T 1zcd_A 373 AVIGYSWLRVRLR 385 (388)
T ss_dssp TSTTTGGGTTTC-
T ss_pred HHHHHHHHHHHCC
T ss_conf 9999999998634
No 2
>3zux_A Transporter, ASBTNM; transport protein, membrane protein; HET: TCH LDA PTY; 2.20A {Neisseria meningitidis} PDB: 3zuy_A*
Probab=1.00 E-value=1 Score=51.02 Aligned_cols=285 Identities=11% Similarity=0.036 Sum_probs=120.3
Q ss_pred HHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHH---CHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999652456643467013999999999999999965279368974---045699999999999999999999984
Q 001810 630 LGYLAAGILIGPYGLSIIRHVHGTKAIAEFGVVFLLFNIGLELSVERLSS---MKKYVFGLGSAQVLVTAVVVGLVAHFV 706 (1010)
Q Consensus 630 Ig~ILaGIILGP~~LglI~~~~~ie~LaeLGLilLLF~AGLEIdl~~Lrr---~~k~il~Lail~vllt~vvVGlia~~l 706 (1010)
...++.++++|-..++... .++......+.+++|..|+.++++.+++ +++..+...+..+++.+ .+++...++
T Consensus 21 ~l~i~~~~~lg~~~P~~~~---~~~~~i~~~l~~~mf~~G~~l~~~~l~~~~~~~~~~~~~l~~~~vi~P-ll~~~l~~~ 96 (332)
T 3zux_A 21 SLWAALFAAAAFFAPDTFK---WAGPYIPWLLGIIMFGMGLTLKPSDFDILFKHPKVVIIGVIAQFAIMP-ATAWCLSKL 96 (332)
T ss_dssp HHHHHHHHHHHHHCGGGTG---GGGGGHHHHHHHHHHHHHHHCCGGGGHHHHHSHHHHHHHHHHHHHHHH-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCHHHH---HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHHHHH-HHHHHHHHH
T ss_conf 9999999999998413446---547789999999999988388999999999570899999999999999-999999999
Q ss_pred CCCCH--HHHHHHHHHCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHH-HHHHCCCCCCCCCCHHHHH
Q ss_conf 09994--78998852124573999999998719988724699999997677999999999-9865179888985378899
Q 001810 707 SGLPG--PASIVIGNGLALSSTAVVLQVLQERGESTSRHGRATFSVLLFQDLAVVVLLIL-IPLISPNSSKGGVGFQAIA 783 (1010)
Q Consensus 707 lGls~--~~ALlLGaiiS~TSpaVvv~IL~Elg~l~SrigrLiLsaSliNDi~aIVLLaI-ialL~~~~s~g~isl~~I~ 783 (1010)
++.+. ..++++- ..+|+.+ ...++...-.-+. .+......++.+.+++..-+ ...+.+. . ..+++..
T Consensus 97 ~~l~~~~~~Glil~-~~~P~~~--~s~v~t~~a~Gd~---~la~~~~~~stll~~~~~Pl~~~l~~g~-~-~~v~~~~-- 166 (332)
T 3zux_A 97 LNLPAEIAVGVILV-GCCPGGT--ASNVMTYLARGNV---ALSVAVTSVSTLTSPLLTPAIFLMLAGE-M-LEIQAAG-- 166 (332)
T ss_dssp TTCCHHHHHHHHHH-HHSCCCT--HHHHHHHHTTCCH---HHHHHHHHHHHHHHHHHHHHHHHHHHCG-G-GHHHHHH--
T ss_pred HCCCHHHHHHHHHH-HCCCCHH--HHHHHHHHHCCCH---HHHHHHHHHHHHHHHHHHHHHHHHHCCC-C-CCCCHHH--
T ss_conf 67986888899787-5488345--8999999939989---9999999999999999999999997587-6-4777999--
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCHH
Q ss_conf 99999999999999999999999889999999851002489999999999999999993235999999999970887405
Q 001810 784 EALGVAAVKAAVAITAIIAGGRLLLRPIYKQIAENQNAEIFSANTLLVILGTSLLTARAGLSMALGAFLAGLLLAETEFS 863 (1010)
Q Consensus 784 ~~Lg~~ll~vilgiiiillig~~Llrpllr~i~~~~~~ei~i~itLliil~~~llAe~lGlSgvLGAFiAGLiL~~~~~~ 863 (1010)
.+...+..+++=+++|..+.++.-++. ++..+..-....+.+.+..+ +.+..+ .
T Consensus 167 -----~~~~l~~~vllP~~lG~l~r~~~~~~~-~~~~~~l~~~s~~~illiv~-----------------~~~~~~---~ 220 (332)
T 3zux_A 167 -----MLMSIVKMVLLPIVLGLIVHKVLGSKT-EKLTDALPLVSVAAIVLIIG-----------------AVVGAS---K 220 (332)
T ss_dssp -----HHHHHHHHTHHHHHHHHHHHHHHGGGG-HHHHTTHHHHHHHHHHHHHH-----------------HHHHHT---H
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH-----------------HHHHHH---H
T ss_conf -----999999999999999999999879999-99997614788999999759-----------------999740---6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-HH
Q ss_conf 77998787299899999999961355813331010127889999999999999999996099968999999987447-99
Q 001810 864 LQVESDIAPYRGLLLGLFFMTVGMSIDPKLLLSNFPVITGALGLLIGGKTILVALVGRLFGVSVISAIRTGLLLAPG-GE 942 (1010)
Q Consensus 864 ~~L~e~i~~i~~LLlPIFFvlIGl~Idl~~L~~~~~~iiliilvvil~K~I~v~l~~~l~gl~~real~iGL~La~r-Ge 942 (1010)
+.+... ...++....+..+.-+...|..++..+++.+++..+++..+.| ..
T Consensus 221 ----~~~~~~------------------------~~~v~~~~~l~~~~~~~lg~~~~r~~~~~~~~~~ti~~e~G~qNs~ 272 (332)
T 3zux_A 221 ----GKIMES------------------------GLLIFAVVVLHNGIGYLLGFFAAKWTGLPYDAQKALTIEVGMQNSG 272 (332)
T ss_dssp ----HHHHHH------------------------HHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHCCCHH
T ss_pred ----HHHHHC------------------------CHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCHH
T ss_conf ----778752------------------------1999999999999999999999998189886746653224322188
Q ss_pred HHHHHHHHHHHCCCCCHHH--HHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 9999999987188888126--979999999999899999983024
Q 001810 943 FAFVAFGEAVNQVCFQPHT--VFLIPNGISIYLQLIMIFFFFNCG 985 (1010)
Q Consensus 943 vaLVla~ials~GiIs~~~--lIvlvVILS~IItPiL~~l~~~~k 985 (1010)
.++.++...+.. ++.. ......+.-.+++.++..+|.++.
T Consensus 273 lai~lA~~~F~~---~p~~alp~~iy~~~q~i~~~~la~~~~~~~ 314 (332)
T 3zux_A 273 LAAALAAAHFAA---APVVAVPGALFSVWHNISGSLLATYWAAKA 314 (332)
T ss_dssp HHHHHHHHHSTT---CGGGGHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHCCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 999999997478---816899999999999999999999997075
No 3
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=1.00 E-value=1 Score=37.65 Aligned_cols=59 Identities=14% Similarity=0.109 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 13677997633899999798249999987655999999998899999999988841078
Q 001810 266 EDGLLLAAENDIKECQANLANCETELRRLQSKKEELQKEVDRLNEVAEKAQMNALKAEE 324 (1010)
Q Consensus 266 ~~~~~~~a~~~~~~~~~~l~~~~~~l~~~~~~~~~lq~~~~~l~~~~~~a~~~a~~a~~ 324 (1010)
+.+++..|+++..+.++.|.+++++|..++.+..+||++-+......++-+..+.+.+.
T Consensus 2012 kr~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~ 2070 (3245)
T 3vkg_A 2012 LREEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKN 2070 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999999999999999999999999999999999999999
No 4
>2k3c_A TMIX peptide; membrane peptide, dodecylphosphocholine micelle, NHE1, Na+/H+ transporter, metal transport; NMR {Synthetic}
Probab=1.00 E-value=1 Score=32.38 Aligned_cols=30 Identities=13% Similarity=0.060 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHCHHHHHHHHHHHHHCCCC
Q ss_conf 999999999993235999999999970887
Q 001810 831 VILGTSLLTARAGLSMALGAFLAGLLLAET 860 (1010)
Q Consensus 831 iil~~~llAe~lGlSgvLGAFiAGLiL~~~ 860 (1010)
.+|.+|+++|.+|+||+++++.+|+.+++.
T Consensus 2 ~~y~~Yl~AE~~~lSGIlavv~~Gi~~~~y 31 (33)
T 2k3c_A 2 KSYMAYLSAELFHLSGIMALIASGVVMRPK 31 (33)
T ss_dssp CCSTTTGGGSSSTTTTTTTTTTTTSCCCCC
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
T ss_conf 107999999882747099999988877521
No 5
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=1.00 E-value=1 Score=30.71 Aligned_cols=54 Identities=11% Similarity=0.151 Sum_probs=27.3
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 111367799763389999979824999998765599999999889999999998
Q 001810 264 KEEDGLLLAAENDIKECQANLANCETELRRLQSKKEELQKEVDRLNEVAEKAQM 317 (1010)
Q Consensus 264 ~~~~~~~~~a~~~~~~~~~~l~~~~~~l~~~~~~~~~lq~~~~~l~~~~~~a~~ 317 (1010)
.+-++.+..+++...++|+.|.+.+++|..+|.+-+++.+|..+|.+.++..+.
T Consensus 2017 ~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~ 2070 (3245)
T 3vkg_A 2017 EQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKN 2070 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999999999999999999999999999999999999999999999999
No 6
>2l0e_A Sodium/hydrogen exchanger 1; transmembrane helix, membrane protein, NHE1; NMR {Homo sapiens}
Probab=1.00 E-value=1 Score=30.63 Aligned_cols=29 Identities=17% Similarity=0.285 Sum_probs=26.2
Q ss_pred CHHHHHHHHHHCCCCCHHHHHHHHHHCCC
Q ss_conf 94789988521245739999999987199
Q 001810 710 PGPASIVIGNGLALSSTAVVLQVLQERGE 738 (1010)
Q Consensus 710 s~~~ALlLGaiiS~TSpaVvv~IL~Elg~ 738 (1010)
+|..++++|+++|+|||+.++.++++.+.
T Consensus 2 ~~~~~llfGAiis~TDpVavlaif~~~~v 30 (33)
T 2l0e_A 2 KKKDNLLFGSIISAVDPVAVLAVFEEIHK 30 (33)
T ss_dssp CCCCCCTTHHHHTTCCHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHCCCCCHHHHHHHHHHCCC
T ss_conf 68999999877058875999999977389
No 7
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=1.00 E-value=1 Score=30.42 Aligned_cols=13 Identities=23% Similarity=0.424 Sum_probs=5.2
Q ss_pred CCCCCCCCCCCCC
Q ss_conf 3444433332112
Q 001810 46 KTRSTRNLSKSIS 58 (1010)
Q Consensus 46 ~~~~~~~~~~~~~ 58 (1010)
||-++|.+-+-++
T Consensus 182 KTe~~k~~~~yla 194 (1184)
T 1i84_S 182 KTENTKKVIQYLA 194 (1184)
T ss_dssp TTHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH
T ss_conf 4188999999988
No 8
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=1.00 E-value=1 Score=29.78 Aligned_cols=15 Identities=33% Similarity=0.430 Sum_probs=5.6
Q ss_pred HHCCCCCCCCCCCCC
Q ss_conf 210137754444444
Q 001810 486 LQKKSSRFFPASFFS 500 (1010)
Q Consensus 486 ~~~~~~r~~~~~~~~ 500 (1010)
+++.|+.-|..+.|+
T Consensus 611 ll~~s~~~~~~~lf~ 625 (1184)
T 1i84_S 611 LLNQSSDKFVADLWK 625 (1184)
T ss_dssp HHHTCSCHHHHHHHS
T ss_pred HHHHCCHHHHHHHHC
T ss_conf 999585399999850
No 9
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=1.00 E-value=1 Score=24.54 Aligned_cols=28 Identities=32% Similarity=0.547 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 8249999987655999999998899999
Q 001810 285 ANCETELRRLQSKKEELQKEVDRLNEVA 312 (1010)
Q Consensus 285 ~~~~~~l~~~~~~~~~lq~~~~~l~~~~ 312 (1010)
+..|+++|.+|....+|||.+|||.+--
T Consensus 2 srlee~~r~l~~ivq~lq~r~drle~tv 29 (32)
T 2akf_A 2 SRLEEDVRNLNAIVQKLQERLDRLEETV 29 (32)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 3688999989999999999999999877
No 10
>2htg_A NHE-1, NHE1 isoform of Na+/H+ exchanger 1, solute; membrane protein, transmembrane segment, helix-KINK-helix; NMR {Synthetic}
Probab=1.00 E-value=1 Score=22.58 Aligned_cols=24 Identities=25% Similarity=0.200 Sum_probs=20.4
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 887246999999976779999999
Q 001810 739 STSRHGRATFSVLLFQDLAVVVLL 762 (1010)
Q Consensus 739 l~SrigrLiLsaSliNDi~aIVLL 762 (1010)
.+.++..+++++|++||..++++|
T Consensus 2 V~~~L~~lvfGESllNDavaiVlf 25 (28)
T 2htg_A 2 INELLHILVFGESLLNDAVTVVLY 25 (28)
T ss_dssp CSSTTHHHHTTTTTTTTTTTTTTT
T ss_pred CCCEEEEEEEEEEEECCCEEEEEE
T ss_conf 786389999864120462799999
Done!