Query 001810
Match_columns 1010
No_of_seqs 199 out of 1585
Neff 5.2
Searched_HMMs 13730
Date Tue Mar 26 16:17:54 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/001810.a3m -d /local_scratch/syshi/scop70.hhm -v 0 -o /local_scratch/syshi/H1_1107-1111//hhsearch_scop/001810hhsearch_scop
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1sf9a_ b.34.15.1 (A:) Hypothe 5.4 64 0.0046 3.2 3.6 37 290-326 16-52 (118)
2 d1uuja_ a.221.1.1 (A:) Lissenc 3.2 1.2E+02 0.0089 0.6 1.0 21 290-310 56-76 (76)
3 d1rmva_ a.24.5.1 (A:) Ribgrass 2.7 1.5E+02 0.011 -0.3 0.1 17 489-505 58-74 (156)
4 d1cgme_ a.24.5.1 (E:) Cucumber 2.5 1.6E+02 0.012 -0.6 0.3 18 489-506 58-75 (160)
5 d1qvra2 c.37.1.20 (A:149-535) 2.0 2.2E+02 0.016 -1.8 13.0 64 140-208 176-239 (387)
6 d1nkpa_ a.38.1.1 (A:) Myc prot 1.7 2.5E+02 0.018 -2.3 6.3 44 265-308 42-85 (88)
7 d2hepa1 a.2.21.1 (A:1-42) Hypo 1.7 2.7E+02 0.019 -2.6 3.6 29 302-330 4-32 (42)
8 d1nkpb_ a.38.1.1 (B:) Max prot 1.2 3.7E+02 0.027 -4.0 5.7 45 264-308 36-80 (83)
9 d3proc1 d.52.1.1 (C:6-85) Alph 1.1 4.1E+02 0.03 -4.3 -0.0 26 173-198 23-49 (80)
10 d1st6a5 a.24.9.1 (A:489-646) V 1.1 4.5E+02 0.033 -4.7 5.4 36 150-185 92-156 (158)
No 1
>d1sf9a_ b.34.15.1 (A:) Hypothetical protein YfhH {Bacillus subtilis [TaxId: 1423]}
Probab=5.40 E-value=64 Score=3.20 Aligned_cols=37 Identities=35% Similarity=0.344 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9998765599999999889999999998884107899
Q 001810 290 ELRRLQSKKEELQKEVDRLNEVAEKAQMNALKAEEDV 326 (1010)
Q Consensus 290 ~l~~~~~~~~~lq~~~~~l~~~~~~a~~~a~~a~~~~ 326 (1010)
+-|--+--+.|||.|+..|+|+|-||++.----|=+|
T Consensus 16 ~krySeMs~~EL~~EIa~L~EKaRKAEq~GivnE~aV 52 (118)
T d1sf9a_ 16 EKRYSQMTPHELNTEIALLSEKARKAEQHGIINELAV 52 (118)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
T ss_conf 6777766999999999999999999998067269999
No 2
>d1uuja_ a.221.1.1 (A:) Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=3.21 E-value=1.2e+02 Score=0.59 Aligned_cols=21 Identities=33% Similarity=0.458 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999876559999999988999
Q 001810 290 ELRRLQSKKEELQKEVDRLNE 310 (1010)
Q Consensus 290 ~l~~~~~~~~~lq~~~~~l~~ 310 (1010)
-.-|||-|.|+|+.++..|+|
T Consensus 56 SViRLQkKImdLE~~~~~lqe 76 (76)
T d1uuja_ 56 SVIRLQKKVMELESKLNEAKE 76 (76)
T ss_dssp CHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHCC
T ss_conf 899999999999999998619
No 3
>d1rmva_ a.24.5.1 (A:) Ribgrass mosaic virus {Ribgrass mosaic virus [TaxId: 51680]}
Probab=2.67 E-value=1.5e+02 Score=-0.30 Aligned_cols=17 Identities=18% Similarity=0.168 Sum_probs=5.6
Q ss_pred CCCCCCCCCCCCCCCCC
Q ss_conf 13775444444456788
Q 001810 489 KSSRFFPASFFSSAVDG 505 (1010)
Q Consensus 489 ~~~r~~~~~~~~~~~~~ 505 (1010)
+-+||=-.-|+-+.-+.
T Consensus 58 ~tvRFP~~~f~V~~~~~ 74 (156)
T d1rmva_ 58 PNQRFPDTGFRVYVNSA 74 (156)
T ss_dssp SSSCCCSSCCEECTTST
T ss_pred CCEECCCCCEEEEECCC
T ss_conf 64046887548995375
No 4
>d1cgme_ a.24.5.1 (E:) Cucumber green mottle mosaic virus {Cucumber green mottle mosaic virus, strain watermelon [TaxId: 12235]}
Probab=2.51 E-value=1.6e+02 Score=-0.61 Aligned_cols=18 Identities=28% Similarity=0.307 Sum_probs=6.8
Q ss_pred CCCCCCCCCCCCCCCCCC
Q ss_conf 137754444444567888
Q 001810 489 KSSRFFPASFFSSAVDGT 506 (1010)
Q Consensus 489 ~~~r~~~~~~~~~~~~~~ 506 (1010)
+-+||=-.-|+-+.-+.+
T Consensus 58 ~t~RFP~~~f~V~~~~~~ 75 (160)
T d1cgme_ 58 INSRFPDAGFYAFLNGPV 75 (160)
T ss_dssp SSCCCCCSCCCBCCCTTT
T ss_pred CCCCCCCCCEEEEECCCH
T ss_conf 651268875489953750
No 5
>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}
Probab=1.97 E-value=2.2e+02 Score=-1.76 Aligned_cols=64 Identities=17% Similarity=0.107 Sum_probs=38.8
Q ss_pred HCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 013358999907999999999999999864346789999999999985102788887766676777899
Q 001810 140 ETKEDAEPPTTDELRELLMNAMKELEVAQLNSTMFEEKAQRISEAAIALKDEAANAWNNVNVTLDMVHE 208 (1010)
Q Consensus 140 ~~~~~~~~~~~~~l~~~l~~a~~~le~a~~~~~~~e~~~~~~~~~ai~~~d~~~~~~~~~~~~~~~~~~ 208 (1010)
=..|.++.|+.++....|+..+..+|.-.......++= +.|+.|-+++-..+.--....|.+.+
T Consensus 176 F~~v~v~ep~~~~~~~il~~~~~~~e~~h~v~~~~~ai-----~~~v~ls~ryi~~r~~PdKAidlld~ 239 (387)
T d1qvra2 176 FQPVYVDEPTVEETISILRGLKEKYEVHHGVRISDSAI-----IAAATLSHRYITERRLPDKAIDLIDE 239 (387)
T ss_dssp CCCEEECCCCHHHHHHHHHHHHHHHHHHTTCEECHHHH-----HHHHHHHHHHCCSSCTHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHH-----HHHHHHCCCCCCCCCCHHHHHHHHHH
T ss_conf 46112799867889999999999987404774669999-----99998502366656670468899999
No 6
>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=1.75 E-value=2.5e+02 Score=-2.34 Aligned_cols=44 Identities=23% Similarity=0.252 Sum_probs=35.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 11367799763389999979824999998765599999999889
Q 001810 265 EEDGLLLAAENDIKECQANLANCETELRRLQSKKEELQKEVDRL 308 (1010)
Q Consensus 265 ~~~~~~~~a~~~~~~~~~~l~~~~~~l~~~~~~~~~lq~~~~~l 308 (1010)
.+-..|..|.+-|+..+......+.+...++.+..+|++++..|
T Consensus 42 sK~~iL~~A~~yI~~L~~~~~~l~~~~~~l~~~~~~L~~~l~~L 85 (88)
T d1nkpa_ 42 PKVVILKKATAYILSVQAEEQKLISEEDLLRKRREQLKHKLEQL 85 (88)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 79999999999999999999999999999999999999999975
No 7
>d2hepa1 a.2.21.1 (A:1-42) Hypothetical protein YnzC {Bacillus subtilis [TaxId: 1423]}
Probab=1.67 E-value=2.7e+02 Score=-2.57 Aligned_cols=29 Identities=28% Similarity=0.442 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99998899999999988841078999999
Q 001810 302 QKEVDRLNEVAEKAQMNALKAEEDVANIM 330 (1010)
Q Consensus 302 q~~~~~l~~~~~~a~~~a~~a~~~~~~~m 330 (1010)
|+.++|.||+|-|++...+..||-.--.+
T Consensus 4 ~~~i~RINeLakK~K~~gLT~~E~~EQ~~ 32 (42)
T d2hepa1 4 NAKIARINELAAKAKAGVITEEEKAEQQK 32 (42)
T ss_dssp SHHHHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCCHHHHHHHHH
T ss_conf 89999999999874035999999999999
No 8
>d1nkpb_ a.38.1.1 (B:) Max protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=1.24 E-value=3.7e+02 Score=-3.97 Aligned_cols=45 Identities=16% Similarity=0.206 Sum_probs=33.3
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 111367799763389999979824999998765599999999889
Q 001810 264 KEEDGLLLAAENDIKECQANLANCETELRRLQSKKEELQKEVDRL 308 (1010)
Q Consensus 264 ~~~~~~~~~a~~~~~~~~~~l~~~~~~l~~~~~~~~~lq~~~~~l 308 (1010)
..+-+.|..|.+-|+..+.-....+.++..++...+.|+.++..|
T Consensus 36 ~sK~~iL~~A~~yI~~L~~~~~~l~~~~~~l~~~~~~L~~~l~~L 80 (83)
T d1nkpb_ 36 ASRAQILDKATEYIQYMRRKNHTHQQDIDDLKRQNALLEQQVRAL 80 (83)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 889999999999999999999999999999999999999999872
No 9
>d3proc1 d.52.1.1 (C:6-85) Alpha-lytic protease prodomain {Lysobacter enzymogenes [TaxId: 69]}
Probab=1.14 E-value=4.1e+02 Score=-4.30 Aligned_cols=26 Identities=19% Similarity=0.230 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHH-HHCHHHHHHHHHH
Q ss_conf 7899999999999-8510278888776
Q 001810 173 MFEEKAQRISEAA-IALKDEAANAWNN 198 (1010)
Q Consensus 173 ~~e~~~~~~~~~a-i~~~d~~~~~~~~ 198 (1010)
.+|.+|-.+.+.+ -.|-+.++++|.|
T Consensus 23 a~E~~A~~~~~~lr~~lg~~faGaW~d 49 (80)
T d3proc1 23 QTEKLARTQAAAIEREFGAQFAGSWIE 49 (80)
T ss_dssp HHHHHHHHHHHHHHHHHGGGEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHCCEEEEC
T ss_conf 999998999999999860300513044
No 10
>d1st6a5 a.24.9.1 (A:489-646) Vinculin {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=1.06 E-value=4.5e+02 Score=-4.72 Aligned_cols=36 Identities=33% Similarity=0.454 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHH---------------HHHHHHHHH--------------HHHHHHHHHHHHHHH
Q ss_conf 079999999999---------------999998643--------------467899999999999
Q 001810 150 TDELRELLMNAM---------------KELEVAQLN--------------STMFEEKAQRISEAA 185 (1010)
Q Consensus 150 ~~~l~~~l~~a~---------------~~le~a~~~--------------~~~~e~~~~~~~~~a 185 (1010)
|++|+-.+++|. +.|..|-.+ +.+|++.|+|+.++|
T Consensus 92 L~dL~~~v~~Avv~~v~d~f~dt~tpl~~l~~Aa~a~~~~p~re~~~~e~a~~f~~~a~~~~~~a 156 (158)
T d1st6a5 92 LKDLKARMQEAMTQEVSDVFSDTTTPIKLLAVAATAPSDTPNREEVFEERAANFENHAARLGATA 156 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSCSSHHHHHHHHHHHSCSCSSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999840169999999874877799964778999999999999999876
Done!