BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 001811
(1010 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3CF1|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF2|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|D Chain D, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF3|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADP
Length = 806
Score = 197 bits (502), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 140/416 (33%), Positives = 212/416 (50%), Gaps = 32/416 (7%)
Query: 582 FSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIR 641
F + P IL++GPPG+GKT +A+AVA L+ + S+L+ E +R
Sbjct: 230 FKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIM--SKLAGESESNLR 287
Query: 642 QALSNFISEALDHAPSIVIFDNLXXXXXXXXXXXXXXXXXXVIALTKFLVDIMDEYGEKR 701
+A EA +AP+I+ D L V L + +MD G K+
Sbjct: 288 KAFE----EAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQL----LTLMD--GLKQ 337
Query: 702 KSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLEC 761
++ + +A+ I +L GRFD V + P A+ R IL+ I ++++
Sbjct: 338 RAH-----VIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQ--IHTKNMKL 390
Query: 762 SDEILLD-VASKCDGYDAYDLEILVDRTVHAAVGRYLH----SDSSFEKHIKPTL--VRD 814
+D++ L+ VA++ G+ DL L A+ + + D + + + +L D
Sbjct: 391 ADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLEDETIDAEVMNSLAVTMD 450
Query: 815 DFSQAMHEFLPVAMRDITKTSAEGGRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAP 874
DF A+ + P A+R+ T E + W+D+GGL D++ ++E+++ P + P+ F +
Sbjct: 451 DFRWALSQSNPSALRE---TVVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFG 507
Query: 875 LRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKYIGASEQAVRDIFSKAT 934
+ VL YGPPGCGKT + A A C FIS+KGPELL + G SE VR+IF KA
Sbjct: 508 MTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKAR 567
Query: 935 AAAPCLLFFDEFDSIAPKR---GHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAAT 987
AAPC+LFFDE DSIA R D G DRV+NQ LTE+DG+ VF+ AT
Sbjct: 568 QAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGAT 623
Score = 121 bits (304), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 62/146 (42%), Positives = 85/146 (58%)
Query: 842 GWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAA 901
G+DD+GG IKEM+ELP + P +F ++ +LLYGPPG GKT I A A
Sbjct: 202 GYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANE 261
Query: 902 CSLRFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVT 961
F + GPE+++K G SE +R F +A AP ++F DE D+IAPKR + V
Sbjct: 262 TGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVE 321
Query: 962 DRVVNQFLTELDGVEVLTGVFVFAAT 987
R+V+Q LT +DG++ V V AAT
Sbjct: 322 RRIVSQLLTLMDGLKQRAHVIVMAAT 347
Score = 43.5 bits (101), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 53/225 (23%), Positives = 81/225 (36%), Gaps = 34/225 (15%)
Query: 576 PDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLE 635
PD L F P G +L +GPPG GKT LAKA+A C +
Sbjct: 500 PDKFLKFGMT--PSKG-VLFYGPPGCGKTLLAKAIANE--------------CQANFISI 542
Query: 636 KGPII--------RQALSNFISEALDHAPSIVIFDNLXXXXXXXXXXXXXXXXXXVIALT 687
KGP + + +A AP ++ FD L +
Sbjct: 543 KGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVIN 602
Query: 688 KFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERK 747
+ L + MD K+ + + + + I ++ GR D + +P P R
Sbjct: 603 QILTE-MDGMSTKKN-------VFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRV 654
Query: 748 AILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTVHAA 792
AIL+ + R+S D L +A +G+ DL + R A
Sbjct: 655 AILKANL-RKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLA 698
>pdb|1R7R|A Chain A, The Crystal Structure Of Murine P97VCP AT 3.6A
Length = 816
Score = 197 bits (502), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 140/416 (33%), Positives = 212/416 (50%), Gaps = 32/416 (7%)
Query: 582 FSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIR 641
F + P IL++GPPG+GKT +A+AVA L+ + S+L+ E +R
Sbjct: 230 FKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIM--SKLAGESESNLR 287
Query: 642 QALSNFISEALDHAPSIVIFDNLXXXXXXXXXXXXXXXXXXVIALTKFLVDIMDEYGEKR 701
+A EA +AP+I+ D L V L + +MD G K+
Sbjct: 288 KAFE----EAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQL----LTLMD--GLKQ 337
Query: 702 KSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLEC 761
++ + +A+ I +L GRFD V + P A+ R IL+ I ++++
Sbjct: 338 RAH-----VIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQ--IHTKNMKL 390
Query: 762 SDEILLD-VASKCDGYDAYDLEILVDRTVHAAVGRYLH----SDSSFEKHIKPTL--VRD 814
+D++ L+ VA++ G+ DL L A+ + + D + + + +L D
Sbjct: 391 ADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLEDETIDAEVMNSLAVTMD 450
Query: 815 DFSQAMHEFLPVAMRDITKTSAEGGRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAP 874
DF A+ + P A+R+ T E + W+D+GGL D++ ++E+++ P + P+ F +
Sbjct: 451 DFRWALSQSNPSALRE---TVVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFG 507
Query: 875 LRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKYIGASEQAVRDIFSKAT 934
+ VL YGPPGCGKT + A A C FIS+KGPELL + G SE VR+IF KA
Sbjct: 508 MTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKAR 567
Query: 935 AAAPCLLFFDEFDSIAPKR---GHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAAT 987
AAPC+LFFDE DSIA R D G DRV+NQ LTE+DG+ VF+ AT
Sbjct: 568 QAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGAT 623
Score = 122 bits (305), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 63/146 (43%), Positives = 85/146 (58%)
Query: 842 GWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAA 901
G+DDVGG IKEM+ELP + P +F ++ +LLYGPPG GKT I A A
Sbjct: 202 GYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANE 261
Query: 902 CSLRFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVT 961
F + GPE+++K G SE +R F +A AP ++F DE D+IAPKR + V
Sbjct: 262 TGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVE 321
Query: 962 DRVVNQFLTELDGVEVLTGVFVFAAT 987
R+V+Q LT +DG++ V V AAT
Sbjct: 322 RRIVSQLLTLMDGLKQRAHVIVMAAT 347
Score = 43.5 bits (101), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 53/225 (23%), Positives = 81/225 (36%), Gaps = 34/225 (15%)
Query: 576 PDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLE 635
PD L F P G +L +GPPG GKT LAKA+A C +
Sbjct: 500 PDKFLKFGMT--PSKG-VLFYGPPGCGKTLLAKAIANE--------------CQANFISI 542
Query: 636 KGPII--------RQALSNFISEALDHAPSIVIFDNLXXXXXXXXXXXXXXXXXXVIALT 687
KGP + + +A AP ++ FD L +
Sbjct: 543 KGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVIN 602
Query: 688 KFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERK 747
+ L + MD K+ + + + + I ++ GR D + +P P R
Sbjct: 603 QILTE-MDGMSTKKN-------VFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRV 654
Query: 748 AILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTVHAA 792
AIL+ + R+S D L +A +G+ DL + R A
Sbjct: 655 AILKANL-RKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLA 698
>pdb|2X8A|A Chain A, Human Nuclear Valosin Containing Protein Like (Nvl), C-
Terminal Aaa-Atpase Domain
Length = 274
Score = 153 bits (386), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 73/145 (50%), Positives = 94/145 (64%)
Query: 843 WDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAAC 902
W D+G L DI+ + I P + P+ F L + VLL GPPGCGKT + A A
Sbjct: 9 WADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANES 68
Query: 903 SLRFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTD 962
L FISVKGPELLN Y+G SE+AVR +F +A +APC++FFDE D++ P+R TG +
Sbjct: 69 GLNFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRETGASV 128
Query: 963 RVVNQFLTELDGVEVLTGVFVFAAT 987
RVVNQ LTE+DG+E VF+ AAT
Sbjct: 129 RVVNQLLTEMDGLEARQQVFIMAAT 153
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 55/225 (24%), Positives = 89/225 (39%), Gaps = 44/225 (19%)
Query: 575 SPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSL 634
+PD F L P +L+ GPPG GKT LAKAVA + + F+
Sbjct: 32 NPDQ---FKALGLVTPAGVLLAGPPGCGKTLLAKAVANE--------SGLNFISV----- 75
Query: 635 EKGPII--------RQALSNFISEALDHAPSIVIFDNLXXXXXXXXXXXXXXXXXXVIAL 686
KGP + +A+ A + AP ++ FD + + +
Sbjct: 76 -KGPELLNMYVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRETGAS----VRV 130
Query: 687 TKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFD--FHVQLPAPAAS 744
L+ MD +++ + +A+ + I ++ GR D V LP PA
Sbjct: 131 VNQLLTEMDGLEARQQ-------VFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPA-- 181
Query: 745 ERKAILEHEIQRRSLECSD-EILLDVAS---KCDGYDAYDLEILV 785
+R AIL+ + + D ++ L+ + +CD Y DL LV
Sbjct: 182 DRLAILKTITKNGTKPPLDADVNLEAIAGDLRCDCYTGADLSALV 226
>pdb|3CF0|A Chain A, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|B Chain B, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|C Chain C, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|D Chain D, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|E Chain E, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|F Chain F, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|G Chain G, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|H Chain H, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|I Chain I, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|J Chain J, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|K Chain K, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|L Chain L, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|M Chain M, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|N Chain N, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
Length = 301
Score = 149 bits (377), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 74/160 (46%), Positives = 99/160 (61%), Gaps = 3/160 (1%)
Query: 831 ITKTSAEGGRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCG 890
+ +T E + W+D+GGL D++ ++E+++ P + P+ F + + VL YGPPGCG
Sbjct: 2 LRETVVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCG 61
Query: 891 KTHIVGAAAAACSLRFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIA 950
KT + A A C FIS+KGPELL + G SE VR+IF KA AAPC+LFFDE DSIA
Sbjct: 62 KTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIA 121
Query: 951 PKR---GHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAAT 987
R D G DRV+NQ LTE+DG+ VF+ AT
Sbjct: 122 KARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGAT 161
Score = 43.5 bits (101), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 53/225 (23%), Positives = 81/225 (36%), Gaps = 34/225 (15%)
Query: 576 PDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLE 635
PD L F P G +L +GPPG GKT LAKA+A C +
Sbjct: 38 PDKFLKFGM--TPSKG-VLFYGPPGCGKTLLAKAIANE--------------CQANFISI 80
Query: 636 KGPII--------RQALSNFISEALDHAPSIVIFDNLXXXXXXXXXXXXXXXXXXVIALT 687
KGP + + +A AP ++ FD L +
Sbjct: 81 KGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVIN 140
Query: 688 KFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERK 747
+ L + MD K+ + + + + I ++ GR D + +P P R
Sbjct: 141 QILTE-MDGMSTKKN-------VFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRV 192
Query: 748 AILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTVHAA 792
AIL+ + R+S D L +A +G+ DL + R A
Sbjct: 193 AILKANL-RKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLA 236
>pdb|1E32|A Chain A, Structure Of The N-Terminal Domain And The D1 Aaa Domain
Of Membrane Fusion Atpase P97
pdb|1S3S|A Chain A, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|B Chain B, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|C Chain C, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|D Chain D, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|E Chain E, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|F Chain F, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
Length = 458
Score = 122 bits (306), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 63/146 (43%), Positives = 85/146 (58%)
Query: 842 GWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAA 901
G+DDVGG IKEM+ELP + P +F ++ +LLYGPPG GKT I A A
Sbjct: 202 GYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANE 261
Query: 902 CSLRFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVT 961
F + GPE+++K G SE +R F +A AP ++F DE D+IAPKR + V
Sbjct: 262 TGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVE 321
Query: 962 DRVVNQFLTELDGVEVLTGVFVFAAT 987
R+V+Q LT +DG++ V V AAT
Sbjct: 322 RRIVSQLLTLMDGLKQRAHVIVMAAT 347
Score = 53.5 bits (127), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 63/249 (25%), Positives = 110/249 (44%), Gaps = 26/249 (10%)
Query: 581 WFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPII 640
F + P IL++GPPG+GKT +A+AVA L+ + S+L+ E +
Sbjct: 229 LFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIM--SKLAGESESNL 286
Query: 641 RQALSNFISEALDHAPSIVIFDNLXXXXXXXXXXXXXXXXXXVIALTKFLVDIMDEYGEK 700
R+A EA +AP+I+ D L V L+ +MD G K
Sbjct: 287 RKAF----EEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIV----SQLLTLMD--GLK 336
Query: 701 RKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLE 760
+++ + +A+ I +L GRFD V + P A+ R IL +I ++++
Sbjct: 337 QRAH-----VIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEIL--QIHTKNMK 389
Query: 761 CSDEILLD-VASKCDGYDAYDLEILVDRTVHAAVGRYLH----SDSSFEKHIKPTL--VR 813
+D++ L+ VA++ G+ DL L A+ + + D + + + +L
Sbjct: 390 LADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLEDETIDAEVMNSLAVTM 449
Query: 814 DDFSQAMHE 822
DDF A+ +
Sbjct: 450 DDFRWALSQ 458
>pdb|3HU3|A Chain A, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs
pdb|3HU3|B Chain B, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs
Length = 489
Score = 122 bits (305), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 62/146 (42%), Positives = 85/146 (58%)
Query: 842 GWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAA 901
G+DD+GG IKEM+ELP + P +F ++ +LLYGPPG GKT I A A
Sbjct: 202 GYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANE 261
Query: 902 CSLRFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVT 961
F + GPE+++K G SE +R F +A AP ++F DE D+IAPKR + V
Sbjct: 262 TGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVE 321
Query: 962 DRVVNQFLTELDGVEVLTGVFVFAAT 987
R+V+Q LT +DG++ V V AAT
Sbjct: 322 RRIVSQLLTLMDGLKQRAHVIVMAAT 347
Score = 66.6 bits (161), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 72/274 (26%), Positives = 124/274 (45%), Gaps = 29/274 (10%)
Query: 582 FSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIR 641
F + P IL++GPPG+GKT +A+AVA L+ + S+L+ E +R
Sbjct: 230 FKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIM--SKLAGESESNLR 287
Query: 642 QALSNFISEALDHAPSIVIFDNLXXXXXXXXXXXXXXXXXXVIALTKFLVDIMDEYGEKR 701
+A EA +AP+I+ D L V L+ +MD G K+
Sbjct: 288 KAF----EEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIV----SQLLTLMD--GLKQ 337
Query: 702 KSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLEC 761
++ + +A+ I +L GRFD V + P A+ R IL +I ++++
Sbjct: 338 RAH-----VIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEIL--QIHTKNMKL 390
Query: 762 SDEILLD-VASKCDGYDAYDLEILVDRTVHAAVGRYLH----SDSSFEKHIKPTL--VRD 814
+D++ L+ VA++ G+ DL L A+ + + D + + + +L D
Sbjct: 391 ADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLEDETIDAEVMNSLAVTMD 450
Query: 815 DFSQAMHEFLPVAMRDITKTSAEGGRSGWDDVGG 848
DF A+ + P A+R+ T E + W+D+GG
Sbjct: 451 DFRWALSQSNPSALRE---TVVEVPQVTWEDIGG 481
>pdb|3HU2|A Chain A, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|B Chain B, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|C Chain C, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|D Chain D, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|E Chain E, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|F Chain F, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
Length = 489
Score = 122 bits (305), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 62/146 (42%), Positives = 85/146 (58%)
Query: 842 GWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAA 901
G+DD+GG IKEM+ELP + P +F ++ +LLYGPPG GKT I A A
Sbjct: 202 GYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANE 261
Query: 902 CSLRFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVT 961
F + GPE+++K G SE +R F +A AP ++F DE D+IAPKR + V
Sbjct: 262 TGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVE 321
Query: 962 DRVVNQFLTELDGVEVLTGVFVFAAT 987
R+V+Q LT +DG++ V V AAT
Sbjct: 322 RRIVSQLLTLMDGLKQRAHVIVMAAT 347
Score = 66.6 bits (161), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 72/274 (26%), Positives = 124/274 (45%), Gaps = 29/274 (10%)
Query: 582 FSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIR 641
F + P IL++GPPG+GKT +A+AVA L+ + S+L+ E +R
Sbjct: 230 FKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIM--SKLAGESESNLR 287
Query: 642 QALSNFISEALDHAPSIVIFDNLXXXXXXXXXXXXXXXXXXVIALTKFLVDIMDEYGEKR 701
+A EA +AP+I+ D L V L+ +MD G K+
Sbjct: 288 KAF----EEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIV----SQLLTLMD--GLKQ 337
Query: 702 KSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLEC 761
++ + +A+ I +L GRFD V + P A+ R IL +I ++++
Sbjct: 338 RAH-----VIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEIL--QIHTKNMKL 390
Query: 762 SDEILLD-VASKCDGYDAYDLEILVDRTVHAAVGRYLH----SDSSFEKHIKPTL--VRD 814
+D++ L+ VA++ G+ DL L A+ + + D + + + +L D
Sbjct: 391 ADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLEDETIDAEVMNSLAVTMD 450
Query: 815 DFSQAMHEFLPVAMRDITKTSAEGGRSGWDDVGG 848
DF A+ + P A+R+ T E + W+D+GG
Sbjct: 451 DFRWALSQSNPSALRE---TVVEVPQVTWEDIGG 481
>pdb|3HU1|A Chain A, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|B Chain B, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|C Chain C, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|D Chain D, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|E Chain E, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|F Chain F, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
Length = 489
Score = 122 bits (305), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 62/146 (42%), Positives = 85/146 (58%)
Query: 842 GWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAA 901
G+DD+GG IKEM+ELP + P +F ++ +LLYGPPG GKT I A A
Sbjct: 202 GYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANE 261
Query: 902 CSLRFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVT 961
F + GPE+++K G SE +R F +A AP ++F DE D+IAPKR + V
Sbjct: 262 TGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVE 321
Query: 962 DRVVNQFLTELDGVEVLTGVFVFAAT 987
R+V+Q LT +DG++ V V AAT
Sbjct: 322 RRIVSQLLTLMDGLKQRAHVIVMAAT 347
Score = 66.6 bits (161), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 72/274 (26%), Positives = 124/274 (45%), Gaps = 29/274 (10%)
Query: 582 FSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIR 641
F + P IL++GPPG+GKT +A+AVA L+ + S+L+ E +R
Sbjct: 230 FKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIM--SKLAGESESNLR 287
Query: 642 QALSNFISEALDHAPSIVIFDNLXXXXXXXXXXXXXXXXXXVIALTKFLVDIMDEYGEKR 701
+A EA +AP+I+ D L V L+ +MD G K+
Sbjct: 288 KAF----EEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIV----SQLLTLMD--GLKQ 337
Query: 702 KSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLEC 761
++ + +A+ I +L GRFD V + P A+ R IL +I ++++
Sbjct: 338 RAH-----VIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEIL--QIHTKNMKL 390
Query: 762 SDEILLD-VASKCDGYDAYDLEILVDRTVHAAVGRYLH----SDSSFEKHIKPTL--VRD 814
+D++ L+ VA++ G+ DL L A+ + + D + + + +L D
Sbjct: 391 ADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLEDETIDAEVMNSLAVTMD 450
Query: 815 DFSQAMHEFLPVAMRDITKTSAEGGRSGWDDVGG 848
DF A+ + P A+R+ T E + W+D+GG
Sbjct: 451 DFRWALSQSNPSALRE---TVVEVPQVTWEDIGG 481
>pdb|4B4T|K Chain K, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 428
Score = 113 bits (282), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 61/148 (41%), Positives = 84/148 (56%), Gaps = 3/148 (2%)
Query: 843 WDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAAC 902
+ DVGGL + I+E +ELP +++ Q + VLLYGPPG GKT +V A A +
Sbjct: 171 YADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANST 230
Query: 903 SLRFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGV-- 960
FI V G E ++KY+G + VRD+F A AP ++F DE DSIA KR TG
Sbjct: 231 KAAFIRVNGSEFVHKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDR 290
Query: 961 -TDRVVNQFLTELDGVEVLTGVFVFAAT 987
R++ + LT++DG + T V V AT
Sbjct: 291 EVQRILIELLTQMDGFDQSTNVKVIMAT 318
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 64/154 (41%), Gaps = 20/154 (12%)
Query: 590 PGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRL---SLEKGPIIRQALSN 646
P +L++GPPG+GKT L KAVA S + A + V S L +GP + + +
Sbjct: 206 PRGVLLYGPPGTGKTMLVKAVANSTK------AAFIRVNGSEFVHKYLGEGP---RMVRD 256
Query: 647 FISEALDHAPSIVIFDNLXXXXXXXXXXXXXXXXXXVIALTKFLVDIMDEYGEKRKSSCG 706
A ++APSI+ D + L + L MD + + S
Sbjct: 257 VFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQ-MDGFDQ----STN 311
Query: 707 IGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPA 740
+ I A +L+ +L GR D ++ P+
Sbjct: 312 VKVIMATNRADTLDP---ALLRPGRLDRKIEFPS 342
>pdb|4B4T|L Chain L, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 437
Score = 112 bits (280), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 59/157 (37%), Positives = 88/157 (56%), Gaps = 3/157 (1%)
Query: 834 TSAEGGRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTH 893
TS E G +D +GGLT+ ++E+IELP K P IF + ++ VLLYGPPG GKT
Sbjct: 171 TSFEQGEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTL 230
Query: 894 IVGAAAAACSLRFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKR 953
+ A AA FI +++KYIG S + +R++F+ A PC++F DE D+I +R
Sbjct: 231 LAKAVAATIGANFIFSPASGIVDKYIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRR 290
Query: 954 GHDNTGV---TDRVVNQFLTELDGVEVLTGVFVFAAT 987
+ T R + + LT++DG + L + AT
Sbjct: 291 FSEGTSADREIQRTLMELLTQMDGFDNLGQTKIIMAT 327
Score = 49.7 bits (117), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 58/246 (23%), Positives = 96/246 (39%), Gaps = 36/246 (14%)
Query: 582 FSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCS----RLSLEKG 637
F + P +L++GPPG+GKT LAKAVA ++ A+ +F S + E
Sbjct: 207 FQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIG------ANFIFSPASGIVDKYIGESA 260
Query: 638 PIIRQALSNFISEALDHAPSIVIFDNLXXXXXXXXXXXXXXXXXXVIALTKFLVDIMDEY 697
IIR+ + A +H P I+ D + L + L MD +
Sbjct: 261 RIIRE----MFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQ-MDGF 315
Query: 698 GEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRR 757
+G + + + + +L GR D V++P P + R I +I
Sbjct: 316 D-------NLGQTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIF--KIHTA 366
Query: 758 SLECSDEILLDVASK-CDGYDAYDLEILVDRTVHAAVGRYLHSDSSFEKHIKPTLVRDDF 816
++ + E + A K DG++ D+ R G + D HI P DD
Sbjct: 367 KVKKTGEFDFEAAVKMSDGFNGADI-----RNCATEAGFFAIRDDR--DHINP----DDL 415
Query: 817 SQAMHE 822
+A+ +
Sbjct: 416 MKAVRK 421
>pdb|4B4T|J Chain J, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 405
Score = 112 bits (279), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 63/156 (40%), Positives = 83/156 (53%), Gaps = 4/156 (2%)
Query: 841 SGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAA 900
S +D VGGLT IKE+IELP K P +F + V+LYGPPG GKT + A A
Sbjct: 145 STYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAH 204
Query: 901 ACSLRFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTG- 959
+FI V G EL+ KYIG + VR++F A AP ++F DE DSI R + G
Sbjct: 205 HTDCKFIRVSGAELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGG 264
Query: 960 --VTDRVVNQFLTELDGVEVLTGVFVFAAT-RLEFF 992
R + + L +LDG E + + AT RL+
Sbjct: 265 DSEVQRTMLELLNQLDGFETSKNIKIIMATNRLDIL 300
Score = 56.2 bits (134), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 54/234 (23%), Positives = 99/234 (42%), Gaps = 33/234 (14%)
Query: 581 WFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPII 640
F + + P ++++GPPG+GKT LA+AVA HH D C + + ++
Sbjct: 173 LFESLGIAQPKGVILYGPPGTGKTLLARAVA----HHTD---------CKFIRVSGAELV 219
Query: 641 RQAL---SNFISE----ALDHAPSIVIFDNLXXXXXXXXXXXXXXXXXXVIALTKFLVDI 693
++ + S + E A +HAPSI+ D + + + L +
Sbjct: 220 QKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELL-NQ 278
Query: 694 MDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHE 753
+D + + I + + L+ + +L GR D ++ P P+ + R IL
Sbjct: 279 LDGFETSKN-------IKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEIL--R 329
Query: 754 IQRRSLECSDEI-LLDVASKCDGYDAYDLE-ILVDRTVHAAVGRYLH-SDSSFE 804
I R + + I L VA K +G D++ + + ++A R +H + FE
Sbjct: 330 IHSRKMNLTRGINLRKVAEKMNGCSGADVKGVCTEAGMYALRERRIHVTQEDFE 383
>pdb|3H4M|A Chain A, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
pdb|3H4M|B Chain B, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
pdb|3H4M|C Chain C, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
Length = 285
Score = 110 bits (276), Expect = 3e-24, Method: Composition-based stats.
Identities = 59/148 (39%), Positives = 81/148 (54%), Gaps = 3/148 (2%)
Query: 843 WDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAAC 902
++D+GGL I+E++ELP K P +F + + +LLYGPPG GKT + A A
Sbjct: 16 YEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATET 75
Query: 903 SLRFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTG--- 959
+ FI V G EL+ K+IG V+DIF A AP ++F DE D+IA KR TG
Sbjct: 76 NATFIRVVGSELVKKFIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDR 135
Query: 960 VTDRVVNQFLTELDGVEVLTGVFVFAAT 987
R + Q L E+DG + V + AT
Sbjct: 136 EVQRTLMQLLAEMDGFDARGDVKIIGAT 163
Score = 50.8 bits (120), Expect = 4e-06, Method: Composition-based stats.
Identities = 50/236 (21%), Positives = 99/236 (41%), Gaps = 28/236 (11%)
Query: 590 PGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIRQALSNFIS 649
P IL++GPPG+GKT LAKAVA E + + + + E +++ +
Sbjct: 51 PKGILLYGPPGTGKTLLAKAVAT--ETNATFIRVVGSELVKKFIGEGASLVK----DIFK 104
Query: 650 EALDHAPSIVIFDNLXXXXXXXXXXXXXXXXXXVIALTKFLVDIMDEYGEKRKSSCGIGP 709
A + APSI+ D + L + L + MD + + G
Sbjct: 105 LAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAE-MDGFDAR-------GD 156
Query: 710 IAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEI-LLD 768
+ + + + + ++ GRFD +++PAP R IL +I R + ++++ L +
Sbjct: 157 VKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEIL--KIHTRKMNLAEDVNLEE 214
Query: 769 VASKCDGYDAYDLEILVDRTVHAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHEFL 824
+A +G +L+ + A+ + ++ + DDF +A+ + +
Sbjct: 215 IAKMTEGCVGAELKAICTEAGMNAI-----------RELRDYVTMDDFRKAVEKIM 259
>pdb|2RKO|A Chain A, Crystal Structure Of The Vps4p-Dimer
Length = 331
Score = 107 bits (267), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 53/150 (35%), Positives = 88/150 (58%), Gaps = 2/150 (1%)
Query: 843 WDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAAC 902
W+DV GL + A+KE + LP KFP++F + + S +LLYGPPG GK+++ A A
Sbjct: 26 WEDVAGLEGAKEALKEAVILPVKFPHLF-KGNRKPTSGILLYGPPGTGKSYLAKAVATEA 84
Query: 903 SLRFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTD 962
+ F SV +L++K++G SE+ V+ +F+ A P ++F DE D++ RG + +
Sbjct: 85 NSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDEVDALTGTRGEGESEASR 144
Query: 963 RVVNQFLTELDGV-EVLTGVFVFAATRLEF 991
R+ + L +++GV GV V AT + +
Sbjct: 145 RIKTELLVQMNGVGNDSQGVLVLGATNIPW 174
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 52/230 (22%), Positives = 90/230 (39%), Gaps = 34/230 (14%)
Query: 582 FSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIR 641
F P G IL++GPPG+GK+ LAKAVA E + + S+ E +++
Sbjct: 53 FKGNRKPTSG-ILLYGPPGTGKSYLAKAVA--TEANSTFFSVSSSDLVSKWMGESEKLVK 109
Query: 642 QALSNFISEALDHAPSIVIFDNLXXXXXXXXXXXXXXXXXXVIALTKFLVDIMDEYGEKR 701
Q + A ++ PSI+ D V ALT + E +
Sbjct: 110 Q----LFAMARENKPSIIFIDE-------------------VDALTGTRGEGESEASRRI 146
Query: 702 KSSC-----GIGPIAFVASAQSLEKIPQSLTSS--GRFDFHVQLPAPAASERKAILEHEI 754
K+ G+G + IP L S+ RF+ + +P P + R + E +
Sbjct: 147 KTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINV 206
Query: 755 QRRSLECSDEILLDVASKCDGYDAYDLEILVDRTVHAAVGRYLHSDSSFE 804
+ E + + +GY D+ ++V + + R + S + F+
Sbjct: 207 GDTPCVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPI-RKIQSATHFK 255
>pdb|2QP9|X Chain X, Crystal Structure Of S.Cerevisiae Vps4
pdb|2QPA|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
pdb|2QPA|B Chain B, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
pdb|2QPA|C Chain C, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
Length = 355
Score = 107 bits (266), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 52/150 (34%), Positives = 88/150 (58%), Gaps = 2/150 (1%)
Query: 843 WDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAAC 902
W+DV GL + A+KE + LP KFP++F + + S +LLYGPPG GK+++ A A
Sbjct: 50 WEDVAGLEGAKEALKEAVILPVKFPHLF-KGNRKPTSGILLYGPPGTGKSYLAKAVATEA 108
Query: 903 SLRFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTD 962
+ F SV +L++K++G SE+ V+ +F+ A P ++F D+ D++ RG + +
Sbjct: 109 NSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASR 168
Query: 963 RVVNQFLTELDGV-EVLTGVFVFAATRLEF 991
R+ + L +++GV GV V AT + +
Sbjct: 169 RIKTELLVQMNGVGNDSQGVLVLGATNIPW 198
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 56/251 (22%), Positives = 96/251 (38%), Gaps = 38/251 (15%)
Query: 582 FSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIR 641
F P G IL++GPPG+GK+ LAKAVA E + + S+ E +++
Sbjct: 77 FKGNRKPTSG-ILLYGPPGTGKSYLAKAVA--TEANSTFFSVSSSDLVSKWMGESEKLVK 133
Query: 642 QALSNFISEALDHAPSIVIFDNLXXXXXXXXXXXXXXXXXXVIALTKFLVDIMDEYGEKR 701
Q + A ++ PSI+ D V ALT + E +
Sbjct: 134 Q----LFAMARENKPSIIFIDQ-------------------VDALTGTRGEGESEASRRI 170
Query: 702 KSSC-----GIGPIAFVASAQSLEKIPQSLTSS--GRFDFHVQLPAPAASERKAILEHEI 754
K+ G+G + IP L S+ RF+ + +P P + R + E +
Sbjct: 171 KTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINV 230
Query: 755 QRRSLECSDEILLDVASKCDGYDAYDLEILVDRTVHAAVGRYLHSDSSFEKHIKPTLVRD 814
+ E + + +GY D+ ++V + + R + S + H K D
Sbjct: 231 GDTPSVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPI-RKIQSAT----HFKDVSTED 285
Query: 815 DFSQAMHEFLP 825
D ++ + P
Sbjct: 286 DETRKLTPSSP 296
>pdb|3EIH|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
pdb|3EIH|B Chain B, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
pdb|3EIH|C Chain C, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
Length = 340
Score = 105 bits (263), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 52/150 (34%), Positives = 88/150 (58%), Gaps = 2/150 (1%)
Query: 843 WDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAAC 902
W+DV GL + A+KE + LP KFP++F + + S +LLYGPPG GK+++ A A
Sbjct: 35 WEDVAGLEGAKEALKEAVILPVKFPHLF-KGNRKPTSGILLYGPPGTGKSYLAKAVATEA 93
Query: 903 SLRFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTD 962
+ F SV +L++K++G SE+ V+ +F+ A P ++F D+ D++ RG + +
Sbjct: 94 NSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASR 153
Query: 963 RVVNQFLTELDGV-EVLTGVFVFAATRLEF 991
R+ + L +++GV GV V AT + +
Sbjct: 154 RIKTELLVQMNGVGNDSQGVLVLGATNIPW 183
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 56/251 (22%), Positives = 96/251 (38%), Gaps = 38/251 (15%)
Query: 582 FSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIR 641
F P G IL++GPPG+GK+ LAKAVA E + + S+ E +++
Sbjct: 62 FKGNRKPTSG-ILLYGPPGTGKSYLAKAVA--TEANSTFFSVSSSDLVSKWMGESEKLVK 118
Query: 642 QALSNFISEALDHAPSIVIFDNLXXXXXXXXXXXXXXXXXXVIALTKFLVDIMDEYGEKR 701
Q + A ++ PSI+ D V ALT + E +
Sbjct: 119 Q----LFAMARENKPSIIFIDQ-------------------VDALTGTRGEGESEASRRI 155
Query: 702 KSSC-----GIGPIAFVASAQSLEKIPQSLTSS--GRFDFHVQLPAPAASERKAILEHEI 754
K+ G+G + IP L S+ RF+ + +P P + R + E +
Sbjct: 156 KTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINV 215
Query: 755 QRRSLECSDEILLDVASKCDGYDAYDLEILVDRTVHAAVGRYLHSDSSFEKHIKPTLVRD 814
+ E + + +GY D+ ++V + + R + S + H K D
Sbjct: 216 GDTPCVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPI-RKIQSAT----HFKDVSTED 270
Query: 815 DFSQAMHEFLP 825
D ++ + P
Sbjct: 271 DETRKLTPCSP 281
>pdb|3EIE|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The So4-Bound
State
Length = 322
Score = 105 bits (263), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 52/150 (34%), Positives = 88/150 (58%), Gaps = 2/150 (1%)
Query: 843 WDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAAC 902
W+DV GL + A+KE + LP KFP++F + + S +LLYGPPG GK+++ A A
Sbjct: 17 WEDVAGLEGAKEALKEAVILPVKFPHLF-KGNRKPTSGILLYGPPGTGKSYLAKAVATEA 75
Query: 903 SLRFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTD 962
+ F SV +L++K++G SE+ V+ +F+ A P ++F D+ D++ RG + +
Sbjct: 76 NSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASR 135
Query: 963 RVVNQFLTELDGV-EVLTGVFVFAATRLEF 991
R+ + L +++GV GV V AT + +
Sbjct: 136 RIKTELLVQMNGVGNDSQGVLVLGATNIPW 165
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 50/225 (22%), Positives = 88/225 (39%), Gaps = 24/225 (10%)
Query: 582 FSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIR 641
F P G IL++GPPG+GK+ LAKAVA E + + S+ E +++
Sbjct: 44 FKGNRKPTSG-ILLYGPPGTGKSYLAKAVA--TEANSTFFSVSSSDLVSKWMGESEKLVK 100
Query: 642 QALSNFISEALDHAPSIVIFDNLXXXXXXXXXXXXXXXXXXVIALTKFLVDIMDEYGEKR 701
Q + A ++ PSI+ D + T+ LV M+ G
Sbjct: 101 Q----LFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIK---TELLVQ-MNGVGNDS 152
Query: 702 KSSCGIGPIAFVASAQSLEKIPQSLTSS--GRFDFHVQLPAPAASERKAILEHEIQRRSL 759
+ +G IP L S+ RF+ + +P P + R + E +
Sbjct: 153 QGVLVLGAT----------NIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPC 202
Query: 760 ECSDEILLDVASKCDGYDAYDLEILVDRTVHAAVGRYLHSDSSFE 804
+ E + + +GY D+ ++V + + R + S + F+
Sbjct: 203 VLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPI-RKIQSATHFK 246
>pdb|2CE7|A Chain A, Edta Treated
pdb|2CE7|B Chain B, Edta Treated
pdb|2CE7|C Chain C, Edta Treated
pdb|2CE7|D Chain D, Edta Treated
pdb|2CE7|E Chain E, Edta Treated
pdb|2CE7|F Chain F, Edta Treated
pdb|2CEA|A Chain A, Cell Division Protein Ftsh
pdb|2CEA|B Chain B, Cell Division Protein Ftsh
pdb|2CEA|C Chain C, Cell Division Protein Ftsh
pdb|2CEA|D Chain D, Cell Division Protein Ftsh
pdb|2CEA|E Chain E, Cell Division Protein Ftsh
pdb|2CEA|F Chain F, Cell Division Protein Ftsh
Length = 476
Score = 105 bits (262), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 57/154 (37%), Positives = 84/154 (54%), Gaps = 10/154 (6%)
Query: 840 RSGWDDVGGLTDIQNAIKEMIEL---PSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVG 896
R + DVGG + +KE++E PSKF I A+ P +LL GPPG GKT +
Sbjct: 12 RVTFKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMP----KGILLVGPPGTGKTLLAR 67
Query: 897 AAAAACSLRFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHD 956
A A ++ F + G + + ++G VRD+F++A A APC++F DE D++ RG
Sbjct: 68 AVAGEANVPFFHISGSDFVELFVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAG 127
Query: 957 NTGVTD---RVVNQFLTELDGVEVLTGVFVFAAT 987
G D + +NQ L E+DG + G+ V AAT
Sbjct: 128 LGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAAT 161
Score = 57.0 bits (136), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 63/235 (26%), Positives = 97/235 (41%), Gaps = 31/235 (13%)
Query: 582 FSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLE------HHKDLVAHIVFVCCSRLSLE 635
F+ +P IL+ GPPG+GKT LA+AVA D V V V +R
Sbjct: 41 FNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVPFFHISGSDFVELFVGVGAAR---- 96
Query: 636 KGPIIRQALSNFISEALDHAPSIVIFDNLXXXXXXXXXXXXXXXXXXVIALTKFLVDIMD 695
+ + ++A HAP IV D + L + LV+ MD
Sbjct: 97 --------VRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVE-MD 147
Query: 696 EYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQ 755
+ K I +A+ + + +L GRFD + + P RK IL EI
Sbjct: 148 GFDSKEG-------IIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKIL--EIH 198
Query: 756 RRSLECSDEILLD-VASKCDGYDAYDLEILVDRT--VHAAVGRYLHSDSSFEKHI 807
R+ ++++ L+ +A + G+ DLE LV+ + A GR + FE+ I
Sbjct: 199 TRNKPLAEDVNLEIIAKRTPGFVGADLENLVNEAALLAAREGRDKITMKDFEEAI 253
>pdb|2ZAM|A Chain A, Crystal Structure Of Mouse Skd1VPS4B APO-Form
pdb|2ZAN|A Chain A, Crystal Structure Of Mouse Skd1VPS4B ATP-Form
pdb|2ZAO|A Chain A, Crystal Structure Of Mouse Skd1VPS4B ADP-Form
Length = 444
Score = 103 bits (256), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 54/153 (35%), Positives = 88/153 (57%), Gaps = 7/153 (4%)
Query: 843 WDDVGGLTDIQNAIKEMIELPSKFPNIFA--QAPLRLRSNVLLYGPPGCGKTHIVGAAAA 900
W DV GL + A+KE + LP KFP++F + P R +LL+GPPG GK+++ A A
Sbjct: 133 WSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWR---GILLFGPPGTGKSYLAKAVAT 189
Query: 901 -ACSLRFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTG 959
A + F S+ +L++K++G SE+ V+++F A P ++F DE DS+ R + +
Sbjct: 190 EANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESE 249
Query: 960 VTDRVVNQFLTELDGVEVLT-GVFVFAATRLEF 991
R+ +FL ++ GV V G+ V AT + +
Sbjct: 250 AARRIKTEFLVQMQGVGVDNDGILVLGATNIPW 282
Score = 47.0 bits (110), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 55/231 (23%), Positives = 89/231 (38%), Gaps = 23/231 (9%)
Query: 582 FSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIR 641
F+ P G IL+ GPPG+GK+ LAKAVA + + + S L +
Sbjct: 160 FTGKRTPWRG-ILLFGPPGTGKSYLAKAVATEANN-----STFFSISSSDLVSKWLGESE 213
Query: 642 QALSNFISEALDHAPSIVIFDNLXXXXXXXXXXXXXXXXXXVIALTKFLVDIMDEYGEKR 701
+ + N A ++ PSI+ D + T+FLV +
Sbjct: 214 KLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIK---TEFLVQMQ------- 263
Query: 702 KSSCGIGPIAFVASAQSLEKIPQSLTSS--GRFDFHVQLPAPAASERKAILEHEIQRRSL 759
G+G IP L S+ RF+ + +P P A R A+ +
Sbjct: 264 ----GVGVDNDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQN 319
Query: 760 ECSDEILLDVASKCDGYDAYDLEILVDRTVHAAVGRYLHSDSSFEKHIKPT 810
++ ++ K DGY D+ I+V + V R + S + F+K P+
Sbjct: 320 SLTEADFQELGRKTDGYSGADISIIVRDALMQPV-RKVQSATHFKKVRGPS 369
>pdb|3KDS|E Chain E, Apo-ftsh Crystal Structure
pdb|3KDS|F Chain F, Apo-ftsh Crystal Structure
pdb|3KDS|G Chain G, Apo-ftsh Crystal Structure
Length = 465
Score = 102 bits (255), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 56/154 (36%), Positives = 83/154 (53%), Gaps = 10/154 (6%)
Query: 840 RSGWDDVGGLTDIQNAIKEMIEL---PSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVG 896
R + DVGG + +KE++E PSKF I A+ P +LL GPPG G T +
Sbjct: 12 RVTFKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMP----KGILLVGPPGTGATLLAR 67
Query: 897 AAAAACSLRFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHD 956
A A ++ F + G + + ++G VRD+F++A A APC++F DE D++ RG
Sbjct: 68 AVAGEANVPFFHISGSDFVELFVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAG 127
Query: 957 NTGVTD---RVVNQFLTELDGVEVLTGVFVFAAT 987
G D + +NQ L E+DG + G+ V AAT
Sbjct: 128 LGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAAT 161
Score = 54.3 bits (129), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 62/235 (26%), Positives = 96/235 (40%), Gaps = 31/235 (13%)
Query: 582 FSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLE------HHKDLVAHIVFVCCSRLSLE 635
F+ +P IL+ GPPG+G T LA+AVA D V V V +R
Sbjct: 41 FNRIGARMPKGILLVGPPGTGATLLARAVAGEANVPFFHISGSDFVELFVGVGAAR---- 96
Query: 636 KGPIIRQALSNFISEALDHAPSIVIFDNLXXXXXXXXXXXXXXXXXXVIALTKFLVDIMD 695
+ + ++A HAP IV D + L + LV+ MD
Sbjct: 97 --------VRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVE-MD 147
Query: 696 EYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQ 755
+ K I +A+ + + +L GRFD + + P RK IL EI
Sbjct: 148 GFDSKEG-------IIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKIL--EIH 198
Query: 756 RRSLECSDEILLD-VASKCDGYDAYDLEILVDRT--VHAAVGRYLHSDSSFEKHI 807
R+ ++++ L+ +A + G+ DLE LV+ + A GR + FE+ I
Sbjct: 199 TRNKPLAEDVNLEIIAKRTPGFVGADLENLVNEAALLAAREGRDKITMKDFEEAI 253
>pdb|1XWI|A Chain A, Crystal Structure Of Vps4b
Length = 322
Score = 102 bits (254), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 54/153 (35%), Positives = 88/153 (57%), Gaps = 7/153 (4%)
Query: 843 WDDVGGLTDIQNAIKEMIELPSKFPNIFA--QAPLRLRSNVLLYGPPGCGKTHIVGAAAA 900
W DV GL + A+KE + LP KFP++F + P R +LL+GPPG GK+++ A A
Sbjct: 11 WSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWR---GILLFGPPGTGKSYLAKAVAT 67
Query: 901 -ACSLRFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTG 959
A + F S+ +L++K++G SE+ V+++F A P ++F DE DS+ R + +
Sbjct: 68 EANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESE 127
Query: 960 VTDRVVNQFLTELDGVEVLT-GVFVFAATRLEF 991
R+ +FL ++ GV V G+ V AT + +
Sbjct: 128 AARRIKTEFLVQMQGVGVDNDGILVLGATNIPW 160
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 54/231 (23%), Positives = 89/231 (38%), Gaps = 23/231 (9%)
Query: 582 FSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIR 641
F+ P G IL+ GPPG+GK+ LAKAVA + + + S L +
Sbjct: 38 FTGKRTPWRG-ILLFGPPGTGKSYLAKAVATEANN-----STFFSISSSDLVSKWLGESE 91
Query: 642 QALSNFISEALDHAPSIVIFDNLXXXXXXXXXXXXXXXXXXVIALTKFLVDIMDEYGEKR 701
+ + N A ++ PSI+ D + T+FLV +
Sbjct: 92 KLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIK---TEFLVQMQ------- 141
Query: 702 KSSCGIGPIAFVASAQSLEKIPQSLTSS--GRFDFHVQLPAPAASERKAILEHEIQRRSL 759
G+G IP L S+ RF+ + +P P R A+ + +
Sbjct: 142 ----GVGVDNDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQN 197
Query: 760 ECSDEILLDVASKCDGYDAYDLEILVDRTVHAAVGRYLHSDSSFEKHIKPT 810
++ ++ K DGY D+ I+V + V R + S + F+K P+
Sbjct: 198 SLTEADFRELGRKTDGYSGADISIIVRDALMQPV-RKVQSATHFKKVRGPS 247
>pdb|4EIW|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|B Chain B, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|C Chain C, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|D Chain D, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|E Chain E, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|F Chain F, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
Length = 508
Score = 101 bits (252), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 53/135 (39%), Positives = 74/135 (54%), Gaps = 7/135 (5%)
Query: 856 IKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELL 915
I E ++ PS+F + A+ P VLL GPPG GKTH+ A A + FI+ G + +
Sbjct: 55 IVEFLKNPSRFHEMGARIP----KGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFV 110
Query: 916 NKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTD---RVVNQFLTEL 972
++G VRD+F A APC++F DE D++ KRG G D + +NQ L E+
Sbjct: 111 EMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEM 170
Query: 973 DGVEVLTGVFVFAAT 987
DG E T + V AAT
Sbjct: 171 DGFEKDTAIVVMAAT 185
Score = 46.6 bits (109), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 51/198 (25%), Positives = 76/198 (38%), Gaps = 27/198 (13%)
Query: 589 LPGHILIHGPPGSGKTSLAKAVAKSLE------HHKDLVAHIVFVCCSRLSLEKGPIIRQ 642
+P +L+ GPPG GKT LA+AVA D V V V +R
Sbjct: 72 IPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAAR----------- 120
Query: 643 ALSNFISEALDHAPSIVIFDNLXXXXXXXXXXXXXXXXXXVIALTKFLVDIMDEYGEKRK 702
+ + A HAP IV D + L + LV+ MD + EK
Sbjct: 121 -VRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVE-MDGF-EKDT 177
Query: 703 SSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECS 762
+ I +A+ + + +L GRFD + + AP R+ IL + + L
Sbjct: 178 A------IVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPL-AE 230
Query: 763 DEILLDVASKCDGYDAYD 780
D L +A + G+ D
Sbjct: 231 DVDLALLAKRTPGFVGAD 248
>pdb|2DHR|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|B Chain B, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|C Chain C, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|D Chain D, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|E Chain E, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|F Chain F, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
Length = 499
Score = 101 bits (252), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 53/135 (39%), Positives = 74/135 (54%), Gaps = 7/135 (5%)
Query: 856 IKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELL 915
I E ++ PS+F + A+ P VLL GPPG GKTH+ A A + FI+ G + +
Sbjct: 46 IVEFLKNPSRFHEMGARIP----KGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFV 101
Query: 916 NKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTD---RVVNQFLTEL 972
++G VRD+F A APC++F DE D++ KRG G D + +NQ L E+
Sbjct: 102 EMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEM 161
Query: 973 DGVEVLTGVFVFAAT 987
DG E T + V AAT
Sbjct: 162 DGFEKDTAIVVMAAT 176
Score = 46.6 bits (109), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 51/198 (25%), Positives = 76/198 (38%), Gaps = 27/198 (13%)
Query: 589 LPGHILIHGPPGSGKTSLAKAVAKSLE------HHKDLVAHIVFVCCSRLSLEKGPIIRQ 642
+P +L+ GPPG GKT LA+AVA D V V V +R
Sbjct: 63 IPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAAR----------- 111
Query: 643 ALSNFISEALDHAPSIVIFDNLXXXXXXXXXXXXXXXXXXVIALTKFLVDIMDEYGEKRK 702
+ + A HAP IV D + L + LV+ MD + EK
Sbjct: 112 -VRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVE-MDGF-EKDT 168
Query: 703 SSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECS 762
+ I +A+ + + +L GRFD + + AP R+ IL + + L
Sbjct: 169 A------IVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPL-AE 221
Query: 763 DEILLDVASKCDGYDAYD 780
D L +A + G+ D
Sbjct: 222 DVDLALLAKRTPGFVGAD 239
>pdb|1IXZ|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus
Thermophilus
pdb|1IY0|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Amp-Pnp
From Thermus Thermophilus
pdb|1IY1|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Adp From
Thermus Thermophilus
Length = 254
Score = 100 bits (249), Expect = 4e-21, Method: Composition-based stats.
Identities = 53/135 (39%), Positives = 74/135 (54%), Gaps = 7/135 (5%)
Query: 856 IKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELL 915
I E ++ PS+F + A+ P VLL GPPG GKTH+ A A + FI+ G + +
Sbjct: 31 IVEFLKNPSRFHEMGARIP----KGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFV 86
Query: 916 NKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTD---RVVNQFLTEL 972
++G VRD+F A APC++F DE D++ KRG G D + +NQ L E+
Sbjct: 87 EMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEM 146
Query: 973 DGVEVLTGVFVFAAT 987
DG E T + V AAT
Sbjct: 147 DGFEKDTAIVVMAAT 161
Score = 44.3 bits (103), Expect = 3e-04, Method: Composition-based stats.
Identities = 49/190 (25%), Positives = 75/190 (39%), Gaps = 28/190 (14%)
Query: 589 LPGHILIHGPPGSGKTSLAKAVAKSLE------HHKDLVAHIVFVCCSRLSLEKGPIIRQ 642
+P +L+ GPPG GKT LA+AVA D V V V +R
Sbjct: 48 IPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAAR----------- 96
Query: 643 ALSNFISEALDHAPSIVIFDNLXXXXXXXXXXXXXXXXXXVIALTKFLVDIMDEYGEKRK 702
+ + A HAP IV D + L + LV+ MD + EK
Sbjct: 97 -VRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVE-MDGF-EKDT 153
Query: 703 SSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECS 762
+ I +A+ + + +L GRFD + + AP R+ IL I R +
Sbjct: 154 A------IVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQIL--RIHARGKPLA 205
Query: 763 DEILLDVASK 772
+++ L + +K
Sbjct: 206 EDVDLALLAK 215
>pdb|1IY2|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus
Thermophilus
Length = 278
Score = 100 bits (248), Expect = 5e-21, Method: Composition-based stats.
Identities = 53/135 (39%), Positives = 74/135 (54%), Gaps = 7/135 (5%)
Query: 856 IKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELL 915
I E ++ PS+F + A+ P VLL GPPG GKTH+ A A + FI+ G + +
Sbjct: 55 IVEFLKNPSRFHEMGARIP----KGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFV 110
Query: 916 NKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTD---RVVNQFLTEL 972
++G VRD+F A APC++F DE D++ KRG G D + +NQ L E+
Sbjct: 111 EMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEM 170
Query: 973 DGVEVLTGVFVFAAT 987
DG E T + V AAT
Sbjct: 171 DGFEKDTAIVVMAAT 185
Score = 43.9 bits (102), Expect = 4e-04, Method: Composition-based stats.
Identities = 49/190 (25%), Positives = 75/190 (39%), Gaps = 28/190 (14%)
Query: 589 LPGHILIHGPPGSGKTSLAKAVAKSLE------HHKDLVAHIVFVCCSRLSLEKGPIIRQ 642
+P +L+ GPPG GKT LA+AVA D V V V +R
Sbjct: 72 IPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAAR----------- 120
Query: 643 ALSNFISEALDHAPSIVIFDNLXXXXXXXXXXXXXXXXXXVIALTKFLVDIMDEYGEKRK 702
+ + A HAP IV D + L + LV+ MD + EK
Sbjct: 121 -VRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVE-MDGF-EKDT 177
Query: 703 SSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECS 762
+ I +A+ + + +L GRFD + + AP R+ IL I R +
Sbjct: 178 A------IVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQIL--RIHARGKPLA 229
Query: 763 DEILLDVASK 772
+++ L + +K
Sbjct: 230 EDVDLALLAK 239
>pdb|1LV7|A Chain A, Crystal Structure Of The Aaa Domain Of Ftsh
Length = 257
Score = 100 bits (248), Expect = 6e-21, Method: Composition-based stats.
Identities = 52/154 (33%), Positives = 83/154 (53%), Gaps = 10/154 (6%)
Query: 840 RSGWDDVGGLTDIQNAIKEMIEL---PSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVG 896
++ + DV G + + + E++E PS+F + + P VL+ GPPG GKT +
Sbjct: 8 KTTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIP----KGVLMVGPPGTGKTLLAK 63
Query: 897 AAAAACSLRFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHD 956
A A + F ++ G + + ++G VRD+F +A AAPC++F DE D++ +RG
Sbjct: 64 AIAGEAKVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAG 123
Query: 957 NTGVTD---RVVNQFLTELDGVEVLTGVFVFAAT 987
G D + +NQ L E+DG E G+ V AAT
Sbjct: 124 LGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAAT 157
Score = 44.3 bits (103), Expect = 4e-04, Method: Composition-based stats.
Identities = 58/225 (25%), Positives = 90/225 (40%), Gaps = 29/225 (12%)
Query: 589 LPGHILIHGPPGSGKTSLAKAVAKSLE------HHKDLVAHIVFVCCSRLSLEKGPIIRQ 642
+P +L+ GPPG+GKT LAKA+A + D V V V SR
Sbjct: 44 IPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFVGVGASR----------- 92
Query: 643 ALSNFISEALDHAPSIVIFDNLXXXXXXXXXXXXXXXXXXVIALTKFLVDIMDEYGEKRK 702
+ + +A AP I+ D + L + LV+ MD +
Sbjct: 93 -VRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVE-MDGFE---- 146
Query: 703 SSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECS 762
G I +A+ + + +L GRFD V + P R+ IL+ ++R L
Sbjct: 147 ---GNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPD 203
Query: 763 DEILLDVASKCDGYDAYDLEILVDR-TVHAAVG-RYLHSDSSFEK 805
+ + +A G+ DL LV+ + AA G + + S FEK
Sbjct: 204 IDAAI-IARGTPGFSGADLANLVNEAALFAARGNKRVVSMVEFEK 247
>pdb|4B4T|H Chain H, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 467
Score = 99.4 bits (246), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 54/148 (36%), Positives = 77/148 (52%), Gaps = 3/148 (2%)
Query: 843 WDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAAC 902
+ DVGG D ++E++ELP P FA + +LLYGPPG GKT A A
Sbjct: 208 YSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRT 267
Query: 903 SLRFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTD 962
FI V G EL+ KY+G + VR++F A C++FFDE D++ R D G +
Sbjct: 268 DATFIRVIGSELVQKYVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDN 327
Query: 963 ---RVVNQFLTELDGVEVLTGVFVFAAT 987
R + + +T+LDG + + V AT
Sbjct: 328 EVQRTMLELITQLDGFDPRGNIKVMFAT 355
Score = 40.0 bits (92), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 20/39 (51%), Positives = 27/39 (69%), Gaps = 3/39 (7%)
Query: 573 LLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVA 611
LLSP+ F+T + P IL++GPPG+GKT A+AVA
Sbjct: 229 LLSPER---FATLGIDPPKGILLYGPPGTGKTLCARAVA 264
>pdb|4B4T|I Chain I, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 437
Score = 99.0 bits (245), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 54/148 (36%), Positives = 77/148 (52%), Gaps = 3/148 (2%)
Query: 843 WDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAAC 902
+ D+GGL IKE +ELP P ++ + ++ V+LYG PG GKT + A A
Sbjct: 181 YSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQT 240
Query: 903 SLRFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTG--- 959
S F+ + G EL+ KY+G + R IF A AP ++F DE D+I KR N+G
Sbjct: 241 SATFLRIVGSELIQKYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGER 300
Query: 960 VTDRVVNQFLTELDGVEVLTGVFVFAAT 987
R + + L +LDG + V V AT
Sbjct: 301 EIQRTMLELLNQLDGFDDRGDVKVIMAT 328
Score = 39.3 bits (90), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 41/165 (24%), Positives = 67/165 (40%), Gaps = 22/165 (13%)
Query: 590 PGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRL---SLEKGP-IIRQALS 645
P ++++G PG+GKT LAKAVA A + + S L L GP + RQ
Sbjct: 216 PKGVILYGAPGTGKTLLAKAVANQTS------ATFLRIVGSELIQKYLGDGPRLCRQ--- 266
Query: 646 NFISEALDHAPSIVIFDNLXXXXXXXXXXXXXXXXXXVIALTKFLVDIMDEYGEKRKSSC 705
A ++APSIV D + + + L + +D + ++
Sbjct: 267 -IFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELL-NQLDGFDDR----- 319
Query: 706 GIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAIL 750
G + + + +E + +L GR D + P S +K IL
Sbjct: 320 --GDVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKIL 362
>pdb|4B4T|M Chain M, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 434
Score = 97.1 bits (240), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 57/149 (38%), Positives = 76/149 (51%), Gaps = 5/149 (3%)
Query: 843 WDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAAC 902
+ DVGGL + E I LP K + F +R L+YGPPG GKT + A AA
Sbjct: 180 YSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQT 239
Query: 903 SLRFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTD 962
+ F+ + P+L+ YIG + VRD F+ A AP ++F DE D+I KR D+ D
Sbjct: 240 NATFLKLAAPQLVQMYIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKR-FDSEKSGD 298
Query: 963 RVVN----QFLTELDGVEVLTGVFVFAAT 987
R V + L +LDG V V AAT
Sbjct: 299 REVQRTMLELLNQLDGFSSDDRVKVLAAT 327
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 55/248 (22%), Positives = 99/248 (39%), Gaps = 40/248 (16%)
Query: 582 FSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSL------E 635
F + P L++GPPG+GKT LA+A A + F+ + L E
Sbjct: 207 FKDMGIRAPKGALMYGPPGTGKTLLARACAAQ--------TNATFLKLAAPQLVQMYIGE 258
Query: 636 KGPIIRQALSNFISEALDHAPSIVIFDNLXXXXXXXXXXXXXXXXXXVIALTKFLVDIMD 695
++R A + A + AP+I+ D L + + L + +D
Sbjct: 259 GAKLVRDAF----ALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELL-NQLD 313
Query: 696 EYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQ 755
+ + + +A+ ++ + +L SGR D ++ P P+ R IL +I
Sbjct: 314 GFSSDDR-------VKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQIL--QIH 364
Query: 756 RRSLECSDEI-LLDVASKCDGYDAYDLEILVDRTVHAAVGRYLHSDSSFEKHIKPTLVRD 814
R + D+I ++A D ++ L+ + TV A + + SS KH +
Sbjct: 365 SRKMTTDDDINWQELARSTDEFNGAQLKAV---TVEAGMIALRNGQSSV-KH-------E 413
Query: 815 DFSQAMHE 822
DF + + E
Sbjct: 414 DFVEGISE 421
>pdb|3B9P|A Chain A, Spastin
Length = 297
Score = 92.0 bits (227), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 50/140 (35%), Positives = 78/140 (55%), Gaps = 5/140 (3%)
Query: 838 GGRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFA--QAPLRLRSNVLLYGPPGCGKTHIV 895
G + W D+ G + A++EM+ LPS P +F +AP + +LL+GPPG GKT +
Sbjct: 15 GAKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAK---GLLLFGPPGNGKTLLA 71
Query: 896 GAAAAACSLRFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGH 955
A A CS F+++ L +KY+G E+ VR +F+ A P ++F DE DS+ +R
Sbjct: 72 RAVATECSATFLNISAASLTSKYVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSS 131
Query: 956 DNTGVTDRVVNQFLTELDGV 975
+ R+ +FL E DG+
Sbjct: 132 SEHEASRRLKTEFLVEFDGL 151
Score = 36.2 bits (82), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 54/236 (22%), Positives = 88/236 (37%), Gaps = 24/236 (10%)
Query: 554 SSLSWMGTTASDVINRI---KVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAV 610
+ + W DV + V+L F+ P G +L+ GPPG+GKT LA+AV
Sbjct: 16 AKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKG-LLLFGPPGNGKTLLARAV 74
Query: 611 AKSLEHHKDLVAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLXXXXXX 670
A + A + + + L+ + + + + A PSI+ D +
Sbjct: 75 A------TECSATFLNISAASLTSKYVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSE 128
Query: 671 XXXXXXXXXXXXVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSG 730
T+FLV E+ + G + A+ + PQ L +
Sbjct: 129 RSSSEHEASRRLK---TEFLV----EFDGLPGNPDGDRIVVLAATNR-----PQELDEAA 176
Query: 731 --RFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEIL 784
RF V + P R+ +L +Q++ E L +A DGY DL L
Sbjct: 177 LRRFTKRVYVSLPDEQTRELLLNRLLQKQGSPLDTEALRRLAKITDGYSGSDLTAL 232
>pdb|3VFD|A Chain A, Human Spastin Aaa Domain
Length = 389
Score = 91.7 bits (226), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 48/136 (35%), Positives = 77/136 (56%), Gaps = 5/136 (3%)
Query: 843 WDDVGGLTDIQNAIKEMIELPSKFPNIFA--QAPLRLRSNVLLYGPPGCGKTHIVGAAAA 900
+DD+ G + A++E++ LPS P +F +AP R +LL+GPPG GKT + A AA
Sbjct: 114 FDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPAR---GLLLFGPPGNGKTMLAKAVAA 170
Query: 901 ACSLRFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGV 960
+ F ++ L +KY+G E+ VR +F+ A P ++F D+ DS+ +R
Sbjct: 171 ESNATFFNISAASLTSKYVGEGEKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDA 230
Query: 961 TDRVVNQFLTELDGVE 976
+ R+ +FL E DGV+
Sbjct: 231 SRRLKTEFLIEFDGVQ 246
Score = 34.3 bits (77), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
Query: 582 FSTYHLPLPGHILIHGPPGSGKTSLAKAVA 611
F+ P G +L+ GPPG+GKT LAKAVA
Sbjct: 141 FTGLRAPARG-LLLFGPPGNGKTMLAKAVA 169
>pdb|2QZ4|A Chain A, Human Paraplegin, Aaa Domain In Complex With Adp
Length = 262
Score = 91.3 bits (225), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 48/149 (32%), Positives = 79/149 (53%), Gaps = 5/149 (3%)
Query: 843 WDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAAC 902
+ DV G+ + + ++E ++ K P F Q ++ LL GPPGCGKT + A A
Sbjct: 5 FKDVAGMHEAKLEVREFVDY-LKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEA 63
Query: 903 SLRFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVT- 961
+ F+++ G E + G VR +F +A A APC+++ DE D++ KR +G +
Sbjct: 64 QVPFLAMAGAEFVEVIGGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSN 123
Query: 962 ---DRVVNQFLTELDGVEVLTGVFVFAAT 987
++ +NQ L E+DG+ V V A+T
Sbjct: 124 TEEEQTLNQLLVEMDGMGTTDHVIVLAST 152
Score = 43.5 bits (101), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 57/228 (25%), Positives = 85/228 (37%), Gaps = 24/228 (10%)
Query: 570 IKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCC 629
+ L SP+ L +P L+ GPPG GKT LAKAVA A + F+
Sbjct: 22 VDYLKSPERFLQLGA---KVPKGALLLGPPGCGKTLLAKAVATE--------AQVPFLAM 70
Query: 630 SRLSLEK--GPIIRQALSNFISEALDHAPSIVIFDNLXXXXXXXXXXXXX-XXXXXVIAL 686
+ + G + + + EA AP IV D + L
Sbjct: 71 AGAEFVEVIGGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTL 130
Query: 687 TKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASER 746
+ LV+ MD G + +AS + + +L GR D HV + P ER
Sbjct: 131 NQLLVE-MDGMGTTDH-------VIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQER 182
Query: 747 KAILEHEIQRRSLECSDEILLD-VASKCDGYDAYDL-EILVDRTVHAA 792
+ I E ++ L S +A G+ D+ I + +HAA
Sbjct: 183 REIFEQHLKSLKLTQSSTFYSQRLAELTPGFSGADIANICNEAALHAA 230
>pdb|3D8B|A Chain A, Crystal Structure Of Human Fidgetin-Like Protein 1 In
Complex With Adp
pdb|3D8B|B Chain B, Crystal Structure Of Human Fidgetin-Like Protein 1 In
Complex With Adp
Length = 357
Score = 89.0 bits (219), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 46/134 (34%), Positives = 73/134 (54%), Gaps = 5/134 (3%)
Query: 843 WDDVGGLTDIQNAIKEMIELPSKFPNIFA--QAPLRLRSNVLLYGPPGCGKTHIVGAAAA 900
W+D+ G+ + IKE++ P P+IF + P + +LL+GPPG GKT I A+
Sbjct: 83 WEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPK---GILLFGPPGTGKTLIGKCIAS 139
Query: 901 ACSLRFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGV 960
F S+ L +K++G E+ VR +F+ A P ++F DE DS+ +RG
Sbjct: 140 QSGATFFSISASSLTSKWVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHES 199
Query: 961 TDRVVNQFLTELDG 974
+ R+ +FL +LDG
Sbjct: 200 SRRIKTEFLVQLDG 213
Score = 32.0 bits (71), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 23/39 (58%), Gaps = 4/39 (10%)
Query: 573 LLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVA 611
+L PD F+ P P IL+ GPPG+GKT + K +A
Sbjct: 104 MLRPDI---FTGLRGP-PKGILLFGPPGTGKTLIGKCIA 138
>pdb|2R62|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh
pdb|2R62|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh
pdb|2R65|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|C Chain C, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|D Chain D, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|E Chain E, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
Length = 268
Score = 79.0 bits (193), Expect = 1e-14, Method: Composition-based stats.
Identities = 51/158 (32%), Positives = 78/158 (49%), Gaps = 6/158 (3%)
Query: 835 SAEGGRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHI 894
+AE + D+ G + + + E+++ K+P +A ++ VLL GPPG GKT +
Sbjct: 2 NAEKPNVRFKDMAGNEEAKEEVVEIVDF-LKYPERYANLGAKIPKGVLLVGPPGTGKTLL 60
Query: 895 VGAAAAACSLRFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKR- 953
A A + F S+ G + ++G VRD+F A AP ++F DE D+I R
Sbjct: 61 AKAVAGEAHVPFFSMGGSSFIEMFVGLGASRVRDLFETAKKQAPSIIFIDEIDAIGKSRA 120
Query: 954 -GHDNTGVTDR--VVNQFLTELDGVEVLTG-VFVFAAT 987
G +G +R +NQ L E+DG V V AAT
Sbjct: 121 AGGVVSGNDEREQTLNQLLAEMDGFGSENAPVIVLAAT 158
Score = 47.4 bits (111), Expect = 4e-05, Method: Composition-based stats.
Identities = 58/227 (25%), Positives = 91/227 (40%), Gaps = 19/227 (8%)
Query: 589 LPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIRQA--LSN 646
+P +L+ GPPG+GKT LAKAVA AH+ F S + + A + +
Sbjct: 43 IPKGVLLVGPPGTGKTLLAKAVAGE--------AHVPFFSMGGSSFIEMFVGLGASRVRD 94
Query: 647 FISEALDHAPSIVIFDNLXXXXXXXXXXXXXXXXXXVIALTKFLVDIMDEYGEKRKSSCG 706
A APSI+ D + L+ MD +G +
Sbjct: 95 LFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGSEN----- 149
Query: 707 IGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEIL 766
P+ +A+ E + +L GRFD V + P + R IL+ I+ L +D L
Sbjct: 150 -APVIVLAATNRPEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIKGVKL-ANDVNL 207
Query: 767 LDVASKCDGYDAYDLEILVDRTVHAAVGRYLHSDSSFEKHIKPTLVR 813
+VA G DL +++ A GR + ++H+K + R
Sbjct: 208 QEVAKLTAGLAGADLANIINEAALLA-GRNNQKEVR-QQHLKEAVER 252
>pdb|1WLF|A Chain A, Structure Of The N-Terminal Domain Of Pex1 Aaa-Atpase:
Characterization Of A Putative Adaptor-Binding Domain
Length = 179
Score = 79.0 bits (193), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 51/162 (31%), Positives = 83/162 (51%), Gaps = 10/162 (6%)
Query: 13 NCFVSLPLKLIETLESTRSAHLLPQVLSLELRSRSNQ---RWVVAWSGATSSSSFIEVAR 69
+CF+ LP +L+ L HLL Q ++E+ S WV S + E+ R
Sbjct: 24 DCFLHLPRRLVAQL------HLL-QNQAIEVASDHQPTYLSWVEGRHFNDQSENVAEINR 76
Query: 70 QFAECISLADHTIVQVRVVSNVLKATLVTIEPLTEDDWEVLELNSEHAEAAILNQVRIVH 129
Q + + L+ V +R S+V+ V +EPL+ DDWE+LEL++ E +L+Q+RIV
Sbjct: 77 QVGQKLGLSSGDQVFLRPCSHVVSCQQVEVEPLSADDWEILELHAISLEQHLLDQIRIVF 136
Query: 130 EAMRFPLWLHGRTIITFHVVSTFPKKPVVQLVPGTEVAVAPK 171
P+W+ +T I +V+ P P +L T++ + PK
Sbjct: 137 PKAVVPIWVDQQTYIFIQIVTLMPAAPYGRLETNTKLLIQPK 178
>pdb|1OFH|A Chain A, Asymmetric Complex Between Hslv And I-domain Deleted Hslu
(h. Influenzae)
pdb|1OFH|B Chain B, Asymmetric Complex Between Hslv And I-domain Deleted Hslu
(h. Influenzae)
pdb|1OFH|C Chain C, Asymmetric Complex Between Hslv And I-domain Deleted Hslu
(h. Influenzae)
pdb|1OFI|A Chain A, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
(H. Influenzae)
pdb|1OFI|B Chain B, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
(H. Influenzae)
pdb|1OFI|C Chain C, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
(H. Influenzae)
Length = 310
Score = 43.1 bits (100), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 58/135 (42%), Gaps = 12/135 (8%)
Query: 848 GLTDIQNAIKEMIELPSKFPNIFAQAPLRLR---SNVLLYGPPGCGKTHIVGAAAAACSL 904
G D + A+ I L +++ + Q PLR N+L+ GP G GKT I A +
Sbjct: 19 GQADAKRAVA--IALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANA 76
Query: 905 RFISVKGPELLN-KYIGAS-EQAVRDIFSKATAAAPC-----LLFFDEFDSIAPKRGHDN 957
FI V+ + Y+G + +RD+ A A ++F DE D I K +
Sbjct: 77 PFIKVEATKFTEVGYVGKEVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKGEYSG 136
Query: 958 TGVTDRVVNQFLTEL 972
V+ V + L L
Sbjct: 137 ADVSREGVQRDLLPL 151
>pdb|3U5Z|B Chain B, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|C Chain C, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|D Chain D, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|E Chain E, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|L Chain L, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|M Chain M, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|N Chain N, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|O Chain O, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U60|B Chain B, Structure Of T4 Bacteriophage Clamp Loader Bound To Open
Clamp, Dna And Atp Analog
pdb|3U60|C Chain C, Structure Of T4 Bacteriophage Clamp Loader Bound To Open
Clamp, Dna And Atp Analog
pdb|3U60|D Chain D, Structure Of T4 Bacteriophage Clamp Loader Bound To Open
Clamp, Dna And Atp Analog
pdb|3U60|E Chain E, Structure Of T4 Bacteriophage Clamp Loader Bound To Open
Clamp, Dna And Atp Analog
pdb|3U61|B Chain B, Structure Of T4 Bacteriophage Clamp Loader Bound To Closed
Clamp, Dna And Atp Analog And Adp
pdb|3U61|C Chain C, Structure Of T4 Bacteriophage Clamp Loader Bound To Closed
Clamp, Dna And Atp Analog And Adp
pdb|3U61|D Chain D, Structure Of T4 Bacteriophage Clamp Loader Bound To Closed
Clamp, Dna And Atp Analog And Adp
pdb|3U61|E Chain E, Structure Of T4 Bacteriophage Clamp Loader Bound To Closed
Clamp, Dna And Atp Analog And Adp
Length = 324
Score = 38.5 bits (88), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 41/75 (54%), Gaps = 11/75 (14%)
Query: 592 HILIHGP-PGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIRQALSNFISE 650
HI++H P PG+GKT++AKA+ D+ A ++FV S ++ +R L+NF S
Sbjct: 49 HIILHSPSPGTGKTTVAKALC------HDVNADMMFVNGSDCKID---FVRGPLTNFASA 99
Query: 651 A-LDHAPSIVIFDNL 664
A D +++ D
Sbjct: 100 ASFDGRQKVIVIDEF 114
>pdb|1IN5|A Chain A, Thermogota Maritima Ruvb A156s Mutant
Length = 334
Score = 37.0 bits (84), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 48/192 (25%), Positives = 74/192 (38%), Gaps = 38/192 (19%)
Query: 592 HILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRL-----SLEKGPIIRQALSN 646
H+L+ GPPG GKT+LA +A L+ + + + V V + SLE+G ++
Sbjct: 53 HVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILTSLERGDVL------ 106
Query: 647 FISEA--LDHAPSIVIFDNLXXXXXXXXXXXXXXXXXXVIALTKFLVDIMDEYGEKRKS- 703
FI E L+ A +++ A+ F +DIM G KS
Sbjct: 107 FIDEIHRLNKAVEELLYS----------------------AIEDFQIDIMIGKGPSAKSI 144
Query: 704 SCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSD 763
I P V S + L S RF ++L E K I++ +E D
Sbjct: 145 RIDIQPFTLVGSTTRSGLLSSPLRS--RFGIILELDFYTVKELKEIIKRAASLMDVEIED 202
Query: 764 EILLDVASKCDG 775
+A + G
Sbjct: 203 AAAEMIAKRSRG 214
>pdb|1NSF|A Chain A, D2 Hexamerization Domain Of N-Ethylmaleimide Sensitive
Factor (Nsf)
Length = 273
Score = 36.6 bits (83), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 36/74 (48%), Gaps = 7/74 (9%)
Query: 880 NVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKYIGASE----QAVRDIFSKATA 935
+VLL GPP GKT + A + FI + P +K IG SE QA++ IF A
Sbjct: 65 SVLLEGPPHSGKTALAAKIAEESNFPFIKICSP---DKMIGFSETAKCQAMKKIFDDAYK 121
Query: 936 AAPCLLFFDEFDSI 949
+ + D+ + +
Sbjct: 122 SQLSCVVVDDIERL 135
>pdb|1D2N|A Chain A, D2 Domain Of N-Ethylmaleimide-Sensitive Fusion Protein
Length = 272
Score = 36.6 bits (83), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 36/74 (48%), Gaps = 7/74 (9%)
Query: 880 NVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKYIGASE----QAVRDIFSKATA 935
+VLL GPP GKT + A + FI + P +K IG SE QA++ IF A
Sbjct: 66 SVLLEGPPHSGKTALAAKIAEESNFPFIKICSP---DKMIGFSETAKCQAMKKIFDDAYK 122
Query: 936 AAPCLLFFDEFDSI 949
+ + D+ + +
Sbjct: 123 SQLSCVVVDDIERL 136
>pdb|1SXJ|D Chain D, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 353
Score = 36.6 bits (83), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 36/60 (60%), Gaps = 5/60 (8%)
Query: 589 LPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKG-PIIRQALSNF 647
LP H+L +GPPG+GKTS A+ K L + DL+ + + S E+G I+R+ + NF
Sbjct: 58 LP-HMLFYGPPGTGKTSTILALTKEL-YGPDLMKSRILELNA--SDERGISIVREKVKNF 113
>pdb|3M6A|A Chain A, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|B Chain B, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|C Chain C, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|D Chain D, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|E Chain E, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|F Chain F, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
Length = 543
Score = 36.6 bits (83), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 19/27 (70%), Positives = 22/27 (81%), Gaps = 1/27 (3%)
Query: 589 LPGHIL-IHGPPGSGKTSLAKAVAKSL 614
L G IL + GPPG GKTSLAK++AKSL
Sbjct: 106 LKGPILCLAGPPGVGKTSLAKSIAKSL 132
>pdb|1J7K|A Chain A, Thermotoga Maritima Ruvb P216g Mutant
Length = 334
Score = 35.8 bits (81), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 47/192 (24%), Positives = 74/192 (38%), Gaps = 38/192 (19%)
Query: 592 HILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRL-----SLEKGPIIRQALSN 646
H+L+ GPPG GKT+LA +A L+ + + + V V + SLE+G ++
Sbjct: 53 HVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILTSLERGDVL------ 106
Query: 647 FISEA--LDHAPSIVIFDNLXXXXXXXXXXXXXXXXXXVIALTKFLVDIMDEYGEKRKS- 703
FI E L+ A +++ A+ F +DIM G KS
Sbjct: 107 FIDEIHRLNKAVEELLYS----------------------AIEDFQIDIMIGKGPSAKSI 144
Query: 704 SCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSD 763
I P V + + L S RF ++L E K I++ +E D
Sbjct: 145 RIDIQPFTLVGATTRSGLLSSPLRS--RFGIILELDFYTVKELKEIIKRAASLMDVEIED 202
Query: 764 EILLDVASKCDG 775
+A + G
Sbjct: 203 AAAEMIAKRSRG 214
>pdb|1IN4|A Chain A, Thermotoga Maritima Ruvb Holliday Junction Branch
Migration Motor
Length = 334
Score = 35.8 bits (81), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 47/192 (24%), Positives = 74/192 (38%), Gaps = 38/192 (19%)
Query: 592 HILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRL-----SLEKGPIIRQALSN 646
H+L+ GPPG GKT+LA +A L+ + + + V V + SLE+G ++
Sbjct: 53 HVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILTSLERGDVL------ 106
Query: 647 FISEA--LDHAPSIVIFDNLXXXXXXXXXXXXXXXXXXVIALTKFLVDIMDEYGEKRKS- 703
FI E L+ A +++ A+ F +DIM G KS
Sbjct: 107 FIDEIHRLNKAVEELLYS----------------------AIEDFQIDIMIGKGPSAKSI 144
Query: 704 SCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSD 763
I P V + + L S RF ++L E K I++ +E D
Sbjct: 145 RIDIQPFTLVGATTRSGLLSSPLRS--RFGIILELDFYTVKELKEIIKRAASLMDVEIED 202
Query: 764 EILLDVASKCDG 775
+A + G
Sbjct: 203 AAAEMIAKRSRG 214
>pdb|1G3I|A Chain A, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|B Chain B, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|C Chain C, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|D Chain D, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|E Chain E, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|F Chain F, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|S Chain S, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|T Chain T, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|U Chain U, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|V Chain V, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|W Chain W, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|X Chain X, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G41|A Chain A, Crystal Structure Of Hslu Haemophilus Influenzae
pdb|1KYI|A Chain A, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|B Chain B, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|C Chain C, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|D Chain D, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|E Chain E, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|F Chain F, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|S Chain S, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|T Chain T, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|U Chain U, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|V Chain V, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|W Chain W, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|X Chain X, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
Length = 444
Score = 35.8 bits (81), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 54/126 (42%), Gaps = 12/126 (9%)
Query: 848 GLTDIQNAIKEMIELPSKFPNIFAQAPLRLR---SNVLLYGPPGCGKTHIVGAAAAACSL 904
G D + A+ I L +++ + Q PLR N+L+ GP G GKT I A +
Sbjct: 19 GQADAKRAVA--IALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANA 76
Query: 905 RFISVKGPELLN-KYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDR 963
FI V+ + Y+G + V I T +A L+ E IA R +R
Sbjct: 77 PFIKVEATKFTEVGYVG---KEVDSIIRDLTDSAMKLVRQQE---IAKNRARAEDVAEER 130
Query: 964 VVNQFL 969
+++ L
Sbjct: 131 ILDALL 136
>pdb|3PXI|A Chain A, Structure Of Meca108:clpc
pdb|3PXI|B Chain B, Structure Of Meca108:clpc
pdb|3PXI|C Chain C, Structure Of Meca108:clpc
Length = 758
Score = 35.8 bits (81), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 36/80 (45%), Gaps = 15/80 (18%)
Query: 876 RLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELL-----------NKYIGASEQ 924
R ++N +L G PG GKT I A + + I+ + PE+L KY G E
Sbjct: 199 RTKNNPVLIGEPGVGKTAI----AEGLAQQIINNEVPEILRDKRVMTLDMGTKYRGEFED 254
Query: 925 AVRDIFSKATAAAPCLLFFD 944
++ + + A +LF D
Sbjct: 255 RLKKVMDEIRQAGNIILFID 274
>pdb|1IN7|A Chain A, Thermotoga Maritima Ruvb R170a
Length = 334
Score = 35.8 bits (81), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 5/54 (9%)
Query: 592 HILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRL-----SLEKGPII 640
H+L+ GPPG GKT+LA +A L+ + + + V V + SLE+G ++
Sbjct: 53 HVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILTSLERGDVL 106
>pdb|1IN8|A Chain A, Thermotoga Maritima Ruvb T158v
Length = 334
Score = 35.8 bits (81), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 5/54 (9%)
Query: 592 HILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRL-----SLEKGPII 640
H+L+ GPPG GKT+LA +A L+ + + + V V + SLE+G ++
Sbjct: 53 HVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILTSLERGDVL 106
>pdb|3PXG|A Chain A, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|B Chain B, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|C Chain C, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|D Chain D, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|E Chain E, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|F Chain F, Structure Of Meca121 And Clpc1-485 Complex
Length = 468
Score = 35.4 bits (80), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 36/80 (45%), Gaps = 15/80 (18%)
Query: 876 RLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLN-----------KYIGASEQ 924
R ++N +L G PG GKT I A + + I+ + PE+L KY G E
Sbjct: 199 RTKNNPVLIGEPGVGKTAI----AEGLAQQIINNEVPEILRDKRVMTLDMGTKYRGEFED 254
Query: 925 AVRDIFSKATAAAPCLLFFD 944
++ + + A +LF D
Sbjct: 255 RLKKVMDEIRQAGNIILFID 274
>pdb|1NJG|A Chain A, Nucleotide-Free Form Of An Isolated E. Coli Clamp Loader
Gamma Subunit
pdb|1NJG|B Chain B, Nucleotide-Free Form Of An Isolated E. Coli Clamp Loader
Gamma Subunit
pdb|1NJF|A Chain A, Nucleotide Bound Form Of An Isolated E. Coli Clamp Loader
Gamma Subunit
pdb|1NJF|B Chain B, Nucleotide Bound Form Of An Isolated E. Coli Clamp Loader
Gamma Subunit
pdb|1NJF|C Chain C, Nucleotide Bound Form Of An Isolated E. Coli Clamp Loader
Gamma Subunit
pdb|1NJF|D Chain D, Nucleotide Bound Form Of An Isolated E. Coli Clamp Loader
Gamma Subunit
Length = 250
Score = 35.4 bits (80), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 40/89 (44%), Gaps = 4/89 (4%)
Query: 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVA 611
V + W T +DV+ + VL + +GL H L G G GKTS+A+ +A
Sbjct: 11 QVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHA----YLFSGTRGVGKTSIARLLA 66
Query: 612 KSLEHHKDLVAHIVFVCCSRLSLEKGPII 640
K L + A VC + +E+G +
Sbjct: 67 KGLNCETGITATPCGVCDNCREIEQGRFV 95
>pdb|2CHQ|A Chain A, Replication Factor C Adpnp Complex
pdb|2CHQ|B Chain B, Replication Factor C Adpnp Complex
pdb|2CHQ|C Chain C, Replication Factor C Adpnp Complex
pdb|2CHV|A Chain A, Replication Factor C Adpnp Complex
pdb|2CHV|B Chain B, Replication Factor C Adpnp Complex
pdb|2CHV|C Chain C, Replication Factor C Adpnp Complex
pdb|2CHV|D Chain D, Replication Factor C Adpnp Complex
pdb|2CHV|E Chain E, Replication Factor C Adpnp Complex
pdb|2CHV|F Chain F, Replication Factor C Adpnp Complex
Length = 319
Score = 35.0 bits (79), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 39/74 (52%), Gaps = 10/74 (13%)
Query: 592 HILIHGPPGSGKTSLAKAVAKSL--EHHKDLVAHIVFVCCSRLSLEKG-PIIRQALSNFI 648
H+L GPPG+GKT+ A A+A+ L E+ +D + S E+G ++R + F
Sbjct: 40 HLLFSGPPGTGKTATAIALARDLFGENWRDNFIEM------NASDERGIDVVRHKIKEFA 93
Query: 649 SEA-LDHAPSIVIF 661
A + AP +IF
Sbjct: 94 RTAPIGGAPFKIIF 107
>pdb|2CHG|A Chain A, Replication Factor C Domains 1 And 2
pdb|2CHG|B Chain B, Replication Factor C Domains 1 And 2
pdb|2CHG|C Chain C, Replication Factor C Domains 1 And 2
pdb|2CHG|D Chain D, Replication Factor C Domains 1 And 2
Length = 226
Score = 35.0 bits (79), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 39/74 (52%), Gaps = 10/74 (13%)
Query: 592 HILIHGPPGSGKTSLAKAVAKSL--EHHKDLVAHIVFVCCSRLSLEKG-PIIRQALSNFI 648
H+L GPPG+GKT+ A A+A+ L E+ +D + S E+G ++R + F
Sbjct: 40 HLLFSGPPGTGKTATAIALARDLFGENWRDNFIEM------NASDERGIDVVRHKIKEFA 93
Query: 649 SEA-LDHAPSIVIF 661
A + AP +IF
Sbjct: 94 RTAPIGGAPFKIIF 107
>pdb|1IN6|A Chain A, Thermotoga Maritima Ruvb K64r Mutant
Length = 334
Score = 35.0 bits (79), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 46/192 (23%), Positives = 74/192 (38%), Gaps = 38/192 (19%)
Query: 592 HILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRL-----SLEKGPIIRQALSN 646
H+L+ GPPG G+T+LA +A L+ + + + V V + SLE+G ++
Sbjct: 53 HVLLAGPPGLGRTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILTSLERGDVL------ 106
Query: 647 FISEA--LDHAPSIVIFDNLXXXXXXXXXXXXXXXXXXVIALTKFLVDIMDEYGEKRKS- 703
FI E L+ A +++ A+ F +DIM G KS
Sbjct: 107 FIDEIHRLNKAVEELLYS----------------------AIEDFQIDIMIGKGPSAKSI 144
Query: 704 SCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSD 763
I P V + + L S RF ++L E K I++ +E D
Sbjct: 145 RIDIQPFTLVGATTRSGLLSSPLRS--RFGIILELDFYTVKELKEIIKRAASLMDVEIED 202
Query: 764 EILLDVASKCDG 775
+A + G
Sbjct: 203 AAAEMIAKRSRG 214
>pdb|3GLF|B Chain B, Crystal Structure Of The Ecoli Clamp Loader Bound To
Primer-template Dna
pdb|3GLF|C Chain C, Crystal Structure Of The Ecoli Clamp Loader Bound To
Primer-template Dna
pdb|3GLF|D Chain D, Crystal Structure Of The Ecoli Clamp Loader Bound To
Primer-template Dna
pdb|3GLF|G Chain G, Crystal Structure Of The Ecoli Clamp Loader Bound To
Primer-template Dna
pdb|3GLF|H Chain H, Crystal Structure Of The Ecoli Clamp Loader Bound To
Primer-template Dna
pdb|3GLF|I Chain I, Crystal Structure Of The Ecoli Clamp Loader Bound To
Primer-template Dna
pdb|3GLI|B Chain B, Crystal Structure Of The E. Coli Clamp Loader Bound To
Primer-template Dna And Psi Peptide
pdb|3GLI|C Chain C, Crystal Structure Of The E. Coli Clamp Loader Bound To
Primer-template Dna And Psi Peptide
pdb|3GLI|D Chain D, Crystal Structure Of The E. Coli Clamp Loader Bound To
Primer-template Dna And Psi Peptide
pdb|3GLI|G Chain G, Crystal Structure Of The E. Coli Clamp Loader Bound To
Primer-template Dna And Psi Peptide
pdb|3GLI|H Chain H, Crystal Structure Of The E. Coli Clamp Loader Bound To
Primer-template Dna And Psi Peptide
pdb|3GLI|I Chain I, Crystal Structure Of The E. Coli Clamp Loader Bound To
Primer-template Dna And Psi Peptide
Length = 395
Score = 35.0 bits (79), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 39/86 (45%), Gaps = 4/86 (4%)
Query: 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVA 611
V + W T +DV+ + VL + +GL H L G G GKTS+A+ +A
Sbjct: 26 QVLARKWRPQTFADVVGQEHVLTALANGLSLGRIH----HAYLFSGTRGVGKTSIARLLA 81
Query: 612 KSLEHHKDLVAHIVFVCCSRLSLEKG 637
K L + A VC + +E+G
Sbjct: 82 KGLNCETGITATPCGVCDNCREIEQG 107
>pdb|1XXI|B Chain B, Adp Bound E. Coli Clamp Loader Complex
pdb|1XXI|C Chain C, Adp Bound E. Coli Clamp Loader Complex
pdb|1XXI|D Chain D, Adp Bound E. Coli Clamp Loader Complex
pdb|1XXI|G Chain G, Adp Bound E. Coli Clamp Loader Complex
pdb|1XXI|H Chain H, Adp Bound E. Coli Clamp Loader Complex
pdb|1XXI|I Chain I, Adp Bound E. Coli Clamp Loader Complex
Length = 368
Score = 34.7 bits (78), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 40/89 (44%), Gaps = 4/89 (4%)
Query: 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVA 611
V + W T +DV+ + VL + +GL H L G G GKTS+A+ +A
Sbjct: 4 QVLARKWRPQTFADVVGQEHVLTALANGLSLGRIH----HAYLFSGTRGVGKTSIARLLA 59
Query: 612 KSLEHHKDLVAHIVFVCCSRLSLEKGPII 640
K L + A VC + +E+G +
Sbjct: 60 KGLNCETGITATPCGVCDNCREIEQGRFV 88
>pdb|3GLG|B Chain B, Crystal Structure Of A Mutant (Gammat157a) E. Coli Clamp
Loader Bound To Primer-Template Dna
pdb|3GLG|C Chain C, Crystal Structure Of A Mutant (Gammat157a) E. Coli Clamp
Loader Bound To Primer-Template Dna
pdb|3GLG|D Chain D, Crystal Structure Of A Mutant (Gammat157a) E. Coli Clamp
Loader Bound To Primer-Template Dna
pdb|3GLG|G Chain G, Crystal Structure Of A Mutant (Gammat157a) E. Coli Clamp
Loader Bound To Primer-Template Dna
pdb|3GLG|H Chain H, Crystal Structure Of A Mutant (Gammat157a) E. Coli Clamp
Loader Bound To Primer-Template Dna
pdb|3GLG|I Chain I, Crystal Structure Of A Mutant (Gammat157a) E. Coli Clamp
Loader Bound To Primer-Template Dna
Length = 395
Score = 34.7 bits (78), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 39/86 (45%), Gaps = 4/86 (4%)
Query: 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVA 611
V + W T +DV+ + VL + +GL H L G G GKTS+A+ +A
Sbjct: 26 QVLARKWRPQTFADVVGQEHVLTALANGLSLGRIH----HAYLFSGTRGVGKTSIARLLA 81
Query: 612 KSLEHHKDLVAHIVFVCCSRLSLEKG 637
K L + A VC + +E+G
Sbjct: 82 KGLNCETGITATPCGVCDNCREIEQG 107
>pdb|1JR3|A Chain A, Crystal Structure Of The Processivity Clamp Loader Gamma
Complex Of E. Coli Dna Polymerase Iii
pdb|1JR3|B Chain B, Crystal Structure Of The Processivity Clamp Loader Gamma
Complex Of E. Coli Dna Polymerase Iii
pdb|1JR3|C Chain C, Crystal Structure Of The Processivity Clamp Loader Gamma
Complex Of E. Coli Dna Polymerase Iii
pdb|1XXH|B Chain B, Atpgs Bound E. Coli Clamp Loader Complex
pdb|1XXH|C Chain C, Atpgs Bound E. Coli Clamp Loader Complex
pdb|1XXH|D Chain D, Atpgs Bound E. Coli Clamp Loader Complex
pdb|1XXH|G Chain G, Atpgs Bound E. Coli Clamp Loader Complex
pdb|1XXH|H Chain H, Atpgs Bound E. Coli Clamp Loader Complex
pdb|1XXH|I Chain I, Atpgs Bound E. Coli Clamp Loader Complex
Length = 373
Score = 34.7 bits (78), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 40/89 (44%), Gaps = 4/89 (4%)
Query: 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVA 611
V + W T +DV+ + VL + +GL H L G G GKTS+A+ +A
Sbjct: 4 QVLARKWRPQTFADVVGQEHVLTALANGLSLGRIH----HAYLFSGTRGVGKTSIARLLA 59
Query: 612 KSLEHHKDLVAHIVFVCCSRLSLEKGPII 640
K L + A VC + +E+G +
Sbjct: 60 KGLNCETGITATPCGVCDNCREIEQGRFV 88
>pdb|3GLH|B Chain B, Crystal Structure Of The E. Coli Clamp Loader Bound To Psi
Peptide
pdb|3GLH|C Chain C, Crystal Structure Of The E. Coli Clamp Loader Bound To Psi
Peptide
pdb|3GLH|D Chain D, Crystal Structure Of The E. Coli Clamp Loader Bound To Psi
Peptide
pdb|3GLH|G Chain G, Crystal Structure Of The E. Coli Clamp Loader Bound To Psi
Peptide
pdb|3GLH|H Chain H, Crystal Structure Of The E. Coli Clamp Loader Bound To Psi
Peptide
pdb|3GLH|I Chain I, Crystal Structure Of The E. Coli Clamp Loader Bound To Psi
Peptide
pdb|3GLH|L Chain L, Crystal Structure Of The E. Coli Clamp Loader Bound To Psi
Peptide
pdb|3GLH|M Chain M, Crystal Structure Of The E. Coli Clamp Loader Bound To Psi
Peptide
pdb|3GLH|N Chain N, Crystal Structure Of The E. Coli Clamp Loader Bound To Psi
Peptide
Length = 376
Score = 34.7 bits (78), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 39/86 (45%), Gaps = 4/86 (4%)
Query: 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVA 611
V + W T +DV+ + VL + +GL H L G G GKTS+A+ +A
Sbjct: 7 QVLARKWRPQTFADVVGQEHVLTALANGLSLGRIH----HAYLFSGTRGVGKTSIARLLA 62
Query: 612 KSLEHHKDLVAHIVFVCCSRLSLEKG 637
K L + A VC + +E+G
Sbjct: 63 KGLNCETGITATPCGVCDNCREIEQG 88
>pdb|1IM2|A Chain A, Hslu, Haemophilus Influenzae, Selenomethionine Variant
Length = 444
Score = 33.9 bits (76), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 52/126 (41%), Gaps = 12/126 (9%)
Query: 848 GLTDIQNAIKEMIELPSKFPNIFAQAPLRLR---SNVLLYGPPGCGKTHIVGAAAAACSL 904
G D + A+ I L +++ Q PLR N+L GP G GKT I A +
Sbjct: 19 GQADAKRAV--AIALRNRWRRXQLQEPLRHEVTPKNILXIGPTGVGKTEIARRLAKLANA 76
Query: 905 RFISVKGPELLN-KYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDR 963
FI V+ + Y+G + V I T +A L+ E IA R +R
Sbjct: 77 PFIKVEATKFTEVGYVG---KEVDSIIRDLTDSAXKLVRQQE---IAKNRARAEDVAEER 130
Query: 964 VVNQFL 969
+++ L
Sbjct: 131 ILDALL 136
>pdb|2C9O|A Chain A, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
pdb|2C9O|B Chain B, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
pdb|2C9O|C Chain C, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
Length = 456
Score = 33.5 bits (75), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 13/22 (59%), Positives = 19/22 (86%)
Query: 593 ILIHGPPGSGKTSLAKAVAKSL 614
+L+ GPPG+GKT+LA A+A+ L
Sbjct: 66 VLLAGPPGTGKTALALAIAQEL 87
>pdb|1SXJ|C Chain C, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 340
Score = 33.5 bits (75), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 20/26 (76%), Gaps = 1/26 (3%)
Query: 589 LPGHILIHGPPGSGKTSLAKAVAKSL 614
LP H+L +GPPG+GKTS A+A+ +
Sbjct: 46 LP-HLLFYGPPGTGKTSTIVALAREI 70
>pdb|3HWS|A Chain A, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|B Chain B, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|C Chain C, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|D Chain D, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|E Chain E, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|F Chain F, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
Length = 363
Score = 33.5 bits (75), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 45/105 (42%), Gaps = 12/105 (11%)
Query: 878 RSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNK-YIGAS-EQAVRDIFSK--- 932
+SN+LL GP G GKT + A + F L Y+G E ++ + K
Sbjct: 51 KSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDY 110
Query: 933 -ATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRV----VNQFLTEL 972
A +++ D+ D I+ R DN +T V V Q L +L
Sbjct: 111 DVQKAQRGIVYIDQIDKIS--RKSDNPSITRDVSGEGVQQALLKL 153
>pdb|3HTE|A Chain A, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|B Chain B, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|C Chain C, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|D Chain D, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|E Chain E, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|F Chain F, Crystal Structure Of Nucleotide-Free Hexameric Clpx
Length = 363
Score = 33.5 bits (75), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 45/105 (42%), Gaps = 12/105 (11%)
Query: 878 RSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNK-YIGAS-EQAVRDIFSK--- 932
+SN+LL GP G GKT + A + F L Y+G E ++ + K
Sbjct: 51 KSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDY 110
Query: 933 -ATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRV----VNQFLTEL 972
A +++ D+ D I+ R DN +T V V Q L +L
Sbjct: 111 DVQKAQRGIVYIDQIDKIS--RKSDNPSITRDVSGEGVQQALLKL 153
>pdb|1HQC|A Chain A, Structure Of Ruvb From Thermus Thermophilus Hb8
pdb|1HQC|B Chain B, Structure Of Ruvb From Thermus Thermophilus Hb8
Length = 324
Score = 33.1 bits (74), Expect = 0.81, Method: Composition-based stats.
Identities = 13/23 (56%), Positives = 17/23 (73%)
Query: 592 HILIHGPPGSGKTSLAKAVAKSL 614
H+L+ GPPG GKT+LA +A L
Sbjct: 40 HLLLFGPPGLGKTTLAHVIAHEL 62
>pdb|1IXS|B Chain B, Structure Of Ruvb Complexed With Ruva Domain Iii
Length = 318
Score = 33.1 bits (74), Expect = 0.82, Method: Composition-based stats.
Identities = 13/23 (56%), Positives = 17/23 (73%)
Query: 592 HILIHGPPGSGKTSLAKAVAKSL 614
H+L+ GPPG GKT+LA +A L
Sbjct: 40 HLLLFGPPGLGKTTLAHVIAHEL 62
>pdb|1IXR|C Chain C, Ruva-Ruvb Complex
Length = 312
Score = 33.1 bits (74), Expect = 0.82, Method: Composition-based stats.
Identities = 13/23 (56%), Positives = 17/23 (73%)
Query: 592 HILIHGPPGSGKTSLAKAVAKSL 614
H+L+ GPPG GKT+LA +A L
Sbjct: 40 HLLLFGPPGLGKTTLAHVIAHEL 62
>pdb|2XSZ|A Chain A, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|B Chain B, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|C Chain C, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
Length = 367
Score = 33.1 bits (74), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 13/22 (59%), Positives = 19/22 (86%)
Query: 593 ILIHGPPGSGKTSLAKAVAKSL 614
+L+ GPPG+GKT+LA A+A+ L
Sbjct: 80 VLLAGPPGTGKTALALAIAQEL 101
>pdb|4HSE|A Chain A, Crystal Structure Of Clpb Nbd1 In Complex With Guanidinium
Chloride And Adp
Length = 397
Score = 33.1 bits (74), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 39/87 (44%), Gaps = 13/87 (14%)
Query: 876 RLRSNVLLYGPPGCGKTHIVGAAAAAC----------SLRFISVKGPELL--NKYIGASE 923
R ++N +L G PG GKT IV A R +S++ LL KY G E
Sbjct: 52 RTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLAGAKYRGEFE 111
Query: 924 QAVRDIFSKAT-AAAPCLLFFDEFDSI 949
+ ++ + + + +LF DE ++
Sbjct: 112 ERLKAVIQEVVQSQGEVILFIDELHTV 138
>pdb|1IQP|A Chain A, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|B Chain B, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|C Chain C, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|D Chain D, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|E Chain E, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|F Chain F, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
Length = 327
Score = 32.7 bits (73), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 3/34 (8%)
Query: 581 WFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSL 614
+ T +P H+L GPPG GKT+ A A+A+ L
Sbjct: 40 YVKTGSMP---HLLFAGPPGVGKTTAALALAREL 70
>pdb|3PVS|A Chain A, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|B Chain B, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|C Chain C, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|D Chain D, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
Length = 447
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 23/33 (69%), Gaps = 8/33 (24%)
Query: 588 PLP-----GHI---LIHGPPGSGKTSLAKAVAK 612
PLP GH+ ++ GPPG+GKT+LA+ +A+
Sbjct: 40 PLPRAIEAGHLHSMILWGPPGTGKTTLAEVIAR 72
>pdb|1QVR|A Chain A, Crystal Structure Analysis Of Clpb
pdb|1QVR|B Chain B, Crystal Structure Analysis Of Clpb
pdb|1QVR|C Chain C, Crystal Structure Analysis Of Clpb
Length = 854
Score = 32.3 bits (72), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 39/87 (44%), Gaps = 13/87 (14%)
Query: 876 RLRSNVLLYGPPGCGKTHIVGAAAAAC----------SLRFISVKGPELL--NKYIGASE 923
R ++N +L G PG GKT IV A R +S++ LL KY G E
Sbjct: 189 RTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLAGAKYRGEFE 248
Query: 924 QAVRDIFSKAT-AAAPCLLFFDEFDSI 949
+ ++ + + + +LF DE ++
Sbjct: 249 ERLKAVIQEVVQSQGEVILFIDELHTV 275
>pdb|1G4A|E Chain E, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4A|F Chain F, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|E Chain E, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|F Chain F, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|K Chain K, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|L Chain L, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1YYF|A Chain A, Correction Of X-Ray Intensities From An Hslv-Hslu Co-
Crystal Containing Lattice Translocation Defects
pdb|1YYF|B Chain B, Correction Of X-Ray Intensities From An Hslv-Hslu Co-
Crystal Containing Lattice Translocation Defects
Length = 443
Score = 31.6 bits (70), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Query: 880 NVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLN-KYIGAS-EQAVRDIFSKA 933
N+L+ GP G GKT I A + FI V+ + Y+G + +RD+ A
Sbjct: 52 NILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDAA 107
>pdb|1DO2|A Chain A, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|B Chain B, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|C Chain C, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|D Chain D, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO0|A Chain A, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|B Chain B, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|C Chain C, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|D Chain D, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|E Chain E, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|F Chain F, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
Length = 442
Score = 31.6 bits (70), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Query: 880 NVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLN-KYIGAS-EQAVRDIFSKA 933
N+L+ GP G GKT I A + FI V+ + Y+G + +RD+ A
Sbjct: 51 NILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDAA 106
>pdb|1E94|E Chain E, Hslv-Hslu From E.Coli
pdb|1E94|F Chain F, Hslv-Hslu From E.Coli
pdb|1HT2|E Chain E, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT2|F Chain F, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT2|G Chain G, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT2|H Chain H, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT1|E Chain E, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HT1|F Chain F, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HT1|G Chain G, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HT1|I Chain I, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HQY|E Chain E, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HQY|F Chain F, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
Length = 449
Score = 31.6 bits (70), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Query: 880 NVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLN-KYIGAS-EQAVRDIFSKA 933
N+L+ GP G GKT I A + FI V+ + Y+G + +RD+ A
Sbjct: 58 NILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDAA 113
>pdb|1Y63|A Chain A, Initial Crystal Structural Analysis Of A Probable Kinase
From Leishmania Major Friedlin
Length = 184
Score = 31.2 bits (69), Expect = 2.9, Method: Composition-based stats.
Identities = 14/29 (48%), Positives = 21/29 (72%)
Query: 592 HILIHGPPGSGKTSLAKAVAKSLEHHKDL 620
+ILI G PG+GKTS+A+ +A L+ + L
Sbjct: 12 NILITGTPGTGKTSMAEMIAAELDGFQHL 40
>pdb|2CMK|A Chain A, Cytidine Monophosphate Kinase In Complex With Cytidine-Di-
Phosphate
pdb|1KDO|A Chain A, Cytidine Monophosphate Kinase From E. Coli In Complex With
Cytidine Monophosphate
pdb|1KDO|B Chain B, Cytidine Monophosphate Kinase From E. Coli In Complex With
Cytidine Monophosphate
pdb|1KDP|A Chain A, Cytidine Monophosphate Kinase From E. Coli In Complex With
2'-Deoxy-Cytidine Monophosphate
pdb|1KDP|B Chain B, Cytidine Monophosphate Kinase From E. Coli In Complex With
2'-Deoxy-Cytidine Monophosphate
pdb|1KDR|A Chain A, Cytidine Monophosphate Kinase From E.Coli In Complex With
Ara-Cytidine Monophosphate
pdb|1KDR|B Chain B, Cytidine Monophosphate Kinase From E.Coli In Complex With
Ara-Cytidine Monophosphate
pdb|1KDT|A Chain A, Cytidine Monophosphate Kinase From E.Coli In Complex With
2',3'-Dideoxy-Cytidine Monophosphate
pdb|1KDT|B Chain B, Cytidine Monophosphate Kinase From E.Coli In Complex With
2',3'-Dideoxy-Cytidine Monophosphate
Length = 227
Score = 30.8 bits (68), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 19/25 (76%)
Query: 593 ILIHGPPGSGKTSLAKAVAKSLEHH 617
I I GP G+GK +L KA+A++L+ H
Sbjct: 8 ITIDGPSGAGKGTLCKAMAEALQWH 32
>pdb|2FEM|A Chain A, Mutant R188m Of The Cytidine Monophosphate Kinase From E.
Coli
pdb|2FEO|A Chain A, Mutant R188m Of The Cytidine Monophosphate Kinase From E.
Coli Complexed With Dcmp
Length = 227
Score = 30.8 bits (68), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 19/25 (76%)
Query: 593 ILIHGPPGSGKTSLAKAVAKSLEHH 617
I I GP G+GK +L KA+A++L+ H
Sbjct: 8 ITIDGPSGAGKGTLCKAMAEALQWH 32
>pdb|1CKE|A Chain A, Cmp Kinase From Escherichia Coli Free Enzyme Structure
Length = 227
Score = 30.8 bits (68), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 19/25 (76%)
Query: 593 ILIHGPPGSGKTSLAKAVAKSLEHH 617
I I GP G+GK +L KA+A++L+ H
Sbjct: 8 ITIDGPSGAGKGTLCKAMAEALQWH 32
>pdb|1RKB|A Chain A, The Structure Of Adrenal Gland Protein Ad-004
Length = 173
Score = 30.8 bits (68), Expect = 4.3, Method: Composition-based stats.
Identities = 15/35 (42%), Positives = 21/35 (60%)
Query: 875 LRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISV 909
L L N+LL G PG GKT + A+ L++I+V
Sbjct: 1 LMLLPNILLTGTPGVGKTTLGKELASKSGLKYINV 35
>pdb|2P65|A Chain A, Crystal Structure Of The First Nucleotide Binding Domain
Of Chaperone Clpb1, Putative, (Pv089580) From Plasmodium
Vivax
Length = 187
Score = 30.4 bits (67), Expect = 4.8, Method: Composition-based stats.
Identities = 25/87 (28%), Positives = 41/87 (47%), Gaps = 13/87 (14%)
Query: 876 RLRSNVLLYGPPGCGKTHIVGAAAAACSLRFI--SVKGPELLN----------KYIGASE 923
R ++N +L G PG GKT IV A + S+KG +L++ KY G E
Sbjct: 41 RTKNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLVSLDLSSLIAGAKYRGDFE 100
Query: 924 QAVRDIFSKAT-AAAPCLLFFDEFDSI 949
+ ++ I + A ++F DE ++
Sbjct: 101 ERLKSILKEVQDAEGQVVMFIDEIHTV 127
>pdb|1UM8|A Chain A, Crystal Structure Of Helicobacter Pylori Clpx
Length = 376
Score = 30.0 bits (66), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 19/24 (79%)
Query: 592 HILIHGPPGSGKTSLAKAVAKSLE 615
+IL+ GP GSGKT +A+ +AK L+
Sbjct: 74 NILLIGPTGSGKTLMAQTLAKHLD 97
>pdb|3TR0|A Chain A, Structure Of Guanylate Kinase (Gmk) From Coxiella Burnetii
Length = 205
Score = 30.0 bits (66), Expect = 6.2, Method: Composition-based stats.
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 594 LIHGPPGSGKTSLAKAVAKSLEHHKDLVAH 623
+I P G+GKTSL +A+ K+L K ++H
Sbjct: 11 IISAPSGAGKTSLVRALVKALAEIKISISH 40
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.133 0.382
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,546,800
Number of Sequences: 62578
Number of extensions: 1103905
Number of successful extensions: 3087
Number of sequences better than 100.0: 84
Number of HSP's better than 100.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 2915
Number of HSP's gapped (non-prelim): 174
length of query: 1010
length of database: 14,973,337
effective HSP length: 108
effective length of query: 902
effective length of database: 8,214,913
effective search space: 7409851526
effective search space used: 7409851526
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)