Query 001812
Match_columns 1010
No_of_seqs 192 out of 229
Neff 3.4
Searched_HMMs 46136
Date Fri Mar 29 09:54:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001812.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001812hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1196 Smc Chromosome segrega 99.9 4.7E-24 1E-28 261.8 16.1 140 748-940 514-658 (1163)
2 TIGR02169 SMC_prok_A chromosom 99.9 5.9E-22 1.3E-26 237.6 22.1 140 748-939 520-660 (1164)
3 KOG0996 Structural maintenance 99.8 1.2E-18 2.5E-23 208.4 21.5 178 747-977 614-801 (1293)
4 KOG0964 Structural maintenance 99.8 6.6E-18 1.4E-22 199.0 19.2 138 748-940 521-661 (1200)
5 KOG0933 Structural maintenance 99.8 9.6E-18 2.1E-22 198.3 16.6 276 655-983 400-706 (1174)
6 KOG0018 Structural maintenance 99.7 1.6E-15 3.5E-20 181.0 20.3 143 747-941 500-647 (1141)
7 PF06470 SMC_hinge: SMC protei 99.6 1.2E-14 2.7E-19 133.5 11.4 118 749-916 2-120 (120)
8 TIGR02168 SMC_prok_B chromosom 99.2 5.1E-10 1.1E-14 134.9 22.3 185 748-984 518-707 (1179)
9 TIGR02168 SMC_prok_B chromosom 97.5 0.0011 2.4E-08 81.1 14.4 100 892-997 593-713 (1179)
10 KOG0250 DNA repair protein RAD 97.3 0.011 2.5E-07 73.8 20.0 202 747-1000 491-714 (1074)
11 KOG0979 Structural maintenance 86.2 9.7 0.00021 48.8 13.7 50 747-796 446-495 (1072)
12 PRK04863 mukB cell division pr 83.0 2.6 5.6E-05 56.0 7.4 47 747-797 681-728 (1486)
13 PF07106 TBPIP: Tat binding pr 65.4 20 0.00044 36.5 7.1 67 656-722 74-153 (169)
14 PF05377 FlaC_arch: Flagella a 53.3 49 0.0011 29.4 6.3 44 963-1006 2-45 (55)
15 PF04949 Transcrip_act: Transc 53.1 58 0.0013 34.1 7.8 41 966-1006 82-122 (159)
16 PF07439 DUF1515: Protein of u 49.5 67 0.0015 32.1 7.2 53 957-1009 4-56 (112)
17 COG4026 Uncharacterized protei 48.2 73 0.0016 35.4 8.0 53 955-1007 150-202 (290)
18 PF07900 DUF1670: Protein of u 44.0 27 0.00058 38.3 4.0 73 426-523 6-98 (220)
19 PF06470 SMC_hinge: SMC protei 43.8 1.5E+02 0.0033 27.6 8.5 83 704-793 29-119 (120)
20 PRK14155 heat shock protein Gr 42.6 66 0.0014 34.9 6.7 49 954-1002 13-61 (208)
21 PRK14163 heat shock protein Gr 41.4 99 0.0022 33.8 7.8 49 953-1001 39-87 (214)
22 PF13382 Adenine_deam_C: Adeni 41.1 23 0.00051 37.1 3.0 75 885-971 49-132 (171)
23 PRK14151 heat shock protein Gr 41.0 91 0.002 33.0 7.2 52 951-1002 17-68 (176)
24 PRK14158 heat shock protein Gr 39.5 1.1E+02 0.0023 33.1 7.6 50 953-1002 39-88 (194)
25 PRK14139 heat shock protein Gr 39.2 1E+02 0.0023 32.9 7.4 49 954-1002 32-80 (185)
26 PRK14154 heat shock protein Gr 38.3 96 0.0021 33.8 7.1 46 956-1001 54-99 (208)
27 PF07851 TMPIT: TMPIT-like pro 38.2 68 0.0015 37.1 6.2 97 658-756 8-107 (330)
28 PRK14162 heat shock protein Gr 37.3 1.3E+02 0.0028 32.5 7.8 50 952-1001 37-86 (194)
29 PF08317 Spc7: Spc7 kinetochor 36.5 1.4E+02 0.0031 33.8 8.4 56 952-1007 207-262 (325)
30 TIGR03769 P_ac_wall_RPT actino 36.1 20 0.00044 29.6 1.3 16 264-279 8-23 (41)
31 PRK14148 heat shock protein Gr 35.9 1.3E+02 0.0028 32.5 7.5 49 954-1002 40-88 (195)
32 PRK14140 heat shock protein Gr 35.4 1.4E+02 0.003 32.2 7.6 50 952-1001 35-84 (191)
33 PRK14143 heat shock protein Gr 35.1 1.4E+02 0.003 33.1 7.8 50 953-1002 66-115 (238)
34 PF07106 TBPIP: Tat binding pr 33.3 1E+02 0.0023 31.4 6.2 50 668-723 72-121 (169)
35 PRK14161 heat shock protein Gr 32.9 1.3E+02 0.0029 31.9 6.9 47 956-1002 21-67 (178)
36 PRK14145 heat shock protein Gr 32.7 1.6E+02 0.0035 31.8 7.7 52 951-1002 42-93 (196)
37 PRK04325 hypothetical protein; 32.5 1.4E+02 0.0029 27.6 6.1 56 663-726 4-59 (74)
38 KOG0518 Actin-binding cytoskel 32.1 1.4E+03 0.031 30.8 16.8 248 320-590 618-946 (1113)
39 PF06698 DUF1192: Protein of u 32.1 1.3E+02 0.0028 27.1 5.6 37 955-991 22-58 (59)
40 PRK14147 heat shock protein Gr 32.0 1.4E+02 0.0031 31.4 7.0 50 953-1002 17-66 (172)
41 cd00632 Prefoldin_beta Prefold 31.7 97 0.0021 29.5 5.3 41 662-702 64-104 (105)
42 PF13600 DUF4140: N-terminal d 31.4 1.3E+02 0.0028 28.2 6.0 34 952-985 68-101 (104)
43 PRK02119 hypothetical protein; 30.0 1.7E+02 0.0036 27.0 6.2 55 662-724 3-57 (73)
44 cd00890 Prefoldin Prefoldin is 29.5 2.3E+02 0.0049 27.1 7.4 64 930-993 56-126 (129)
45 PF11559 ADIP: Afadin- and alp 29.1 2.8E+02 0.0061 27.8 8.3 48 955-1002 74-121 (151)
46 KOG1962 B-cell receptor-associ 28.5 1.8E+02 0.0038 32.1 7.1 50 955-1004 152-201 (216)
47 PRK00736 hypothetical protein; 28.3 1.9E+02 0.0041 26.3 6.2 51 666-724 3-53 (68)
48 PF07028 DUF1319: Protein of u 28.3 2.1E+02 0.0046 29.3 7.1 59 664-722 42-100 (126)
49 PF06810 Phage_GP20: Phage min 28.1 2.4E+02 0.0052 29.2 7.7 53 954-1006 27-82 (155)
50 PRK00295 hypothetical protein; 27.9 1.9E+02 0.0042 26.2 6.2 51 666-724 3-53 (68)
51 PF10146 zf-C4H2: Zinc finger- 27.0 2.4E+02 0.0051 31.2 7.8 50 958-1007 50-99 (230)
52 PRK14141 heat shock protein Gr 27.0 1.6E+02 0.0036 32.1 6.6 45 957-1001 34-78 (209)
53 PRK11637 AmiB activator; Provi 26.9 2.4E+02 0.0052 32.9 8.4 26 973-998 101-126 (428)
54 PRK02793 phi X174 lysis protei 26.4 2.2E+02 0.0048 26.1 6.4 54 665-726 5-58 (72)
55 PRK14153 heat shock protein Gr 26.3 1.5E+02 0.0033 32.0 6.1 48 955-1002 34-81 (194)
56 PF10186 Atg14: UV radiation r 26.2 2.9E+02 0.0062 29.7 8.3 46 954-999 63-108 (302)
57 PF04728 LPP: Lipoprotein leuc 26.1 4.1E+02 0.0089 23.9 7.6 44 955-998 4-47 (56)
58 KOG4603 TBP-1 interacting prot 25.9 1.7E+02 0.0037 31.5 6.3 50 668-723 79-128 (201)
59 PF13863 DUF4200: Domain of un 25.8 3.4E+02 0.0075 26.0 8.0 52 955-1006 8-59 (126)
60 PF05266 DUF724: Protein of un 25.6 1.2E+02 0.0027 32.3 5.3 62 664-729 127-188 (190)
61 PRK14160 heat shock protein Gr 25.0 2.6E+02 0.0055 30.7 7.6 47 955-1001 62-108 (211)
62 PRK14157 heat shock protein Gr 25.0 2E+02 0.0044 31.9 6.8 44 958-1001 81-124 (227)
63 COG1196 Smc Chromosome segrega 24.8 2.4E+02 0.0052 37.3 8.7 45 748-797 588-632 (1163)
64 PF05377 FlaC_arch: Flagella a 24.7 2.3E+02 0.0049 25.4 5.8 38 956-993 2-39 (55)
65 COG3883 Uncharacterized protei 24.7 3E+02 0.0064 31.3 8.2 51 955-1005 60-110 (265)
66 PF10158 LOH1CR12: Tumour supp 24.7 2.4E+02 0.0052 28.8 6.8 42 966-1007 47-88 (131)
67 PF03962 Mnd1: Mnd1 family; I 24.5 1.6E+02 0.0036 31.2 6.0 60 660-719 68-140 (188)
68 KOG3850 Predicted membrane pro 24.3 2.3E+02 0.005 33.8 7.4 54 956-1009 35-107 (455)
69 PRK04406 hypothetical protein; 24.3 2.9E+02 0.0062 25.7 6.7 54 664-725 7-60 (75)
70 TIGR00998 8a0101 efflux pump m 24.1 3.1E+02 0.0066 30.2 8.2 48 959-1006 92-139 (334)
71 PRK14144 heat shock protein Gr 23.9 2.6E+02 0.0057 30.4 7.4 48 954-1001 45-92 (199)
72 KOG2391 Vacuolar sorting prote 23.9 4.4E+02 0.0096 31.1 9.4 124 645-803 195-332 (365)
73 KOG3287 Membrane trafficking p 23.1 9.2E+02 0.02 27.1 11.2 112 536-696 59-174 (236)
74 PRK14146 heat shock protein Gr 22.9 2.8E+02 0.006 30.4 7.4 48 955-1002 55-102 (215)
75 PF15079 DUF4546: Domain of un 22.9 3E+02 0.0066 29.6 7.3 48 956-1007 49-96 (205)
76 PF02996 Prefoldin: Prefoldin 22.8 2.9E+02 0.0063 26.2 6.8 45 950-994 73-117 (120)
77 TIGR02894 DNA_bind_RsfA transc 21.6 4.4E+02 0.0096 28.1 8.2 108 881-1007 42-150 (161)
78 PRK00846 hypothetical protein; 21.3 3.3E+02 0.0072 25.7 6.5 57 662-726 7-63 (77)
79 PRK14712 conjugal transfer nic 21.0 67 0.0015 43.9 2.8 144 781-939 1311-1491(1623)
80 PF10779 XhlA: Haemolysin XhlA 20.5 1.8E+02 0.004 26.2 4.6 41 665-705 3-43 (71)
81 PF05384 DegS: Sensor protein 20.2 2.8E+02 0.006 29.2 6.5 49 954-1002 27-75 (159)
82 PF06005 DUF904: Protein of un 20.2 7E+02 0.015 23.1 8.5 19 956-974 20-38 (72)
83 cd00584 Prefoldin_alpha Prefol 20.0 4.4E+02 0.0095 25.6 7.5 40 953-992 86-125 (129)
No 1
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=99.91 E-value=4.7e-24 Score=261.78 Aligned_cols=140 Identities=26% Similarity=0.392 Sum_probs=124.6
Q ss_pred CCceeeeccceeeeccchhhhHHHHhhhhhhhceeEecchHHHHHHHHhhhcCCccccchhhhhhhhcCcccCCeeEEEe
Q 001812 748 MEDVVGPVALIGTVCTNKLSRTLAEYLGEHQMLALVCRSFEAAFALEKYEQDGTIDRKCALHATAAALGKSIDGRYLVIC 827 (1010)
Q Consensus 748 l~GIiGvVAeLg~V~d~~lsa~LseyLGietmL~IVv~s~e~ak~le~yl~~g~id~~~~lh~~~~s~Kr~k~GRaTFLP 827 (1010)
.+||+|+|++|++|++ .+..||+.+||.+ +-+|||+|+.+|+.++.|+ |+++.||+||||
T Consensus 514 ~~Gv~G~v~~li~v~~-~y~~Aie~alG~~-l~~vVV~~~~~a~~~i~~l------------------k~~~~gr~tflp 573 (1163)
T COG1196 514 LPGVYGPVAELIKVKE-KYETALEAALGNR-LQAVVVENEEVAKKAIEFL------------------KENKAGRATFLP 573 (1163)
T ss_pred CCCccchHHHhcCcCh-HHHHHHHHHcccc-cCCeeeCChHHHHHHHHHH------------------hhcCCCccccCc
Confidence 8999999999999988 6666799999975 7799999999999999999 899999999999
Q ss_pred cCCCCCCCCCCCCCCccccccCCCCCCCCCCCCCCceEEEeccccccccccccccccCCCchHhHHHHhhcceEEEechh
Q 001812 828 LEGIRPYSGKFGSNDPQRKLALPAPTLPKGNIPAGFVGYAVNMVNLDDHHMHIRTSAGNGLRETLLYRLFGKLQVYKTRK 907 (1010)
Q Consensus 828 Ln~IRP~~~~~~~~dpQr~L~L~~P~L~~g~~~~GFIGyAVNLI~~D~k~~~~~T~~g~GLRetLF~~LFG~tlVfeT~e 907 (1010)
|+.|+|.... +. . ..+||+|+|+|+|+||++|. .+|+++||+|+|++
T Consensus 574 l~~i~~~~~~--------------~~--~--~~~g~~~~a~dli~~d~~~~------------~~~~~~l~~t~Iv~--- 620 (1163)
T COG1196 574 LDRIKPLRSL--------------KS--D--AAPGFLGLASDLIDFDPKYE------------PAVRFVLGDTLVVD--- 620 (1163)
T ss_pred hhhhcccccc--------------cc--c--cccchhHHHHHHhcCCHHHH------------HHHHHHhCCeEEec---
Confidence 9999986541 11 1 17999999999999999999 89999999999988
Q ss_pred cHHHHHHhhc-C----ceEEccCceeecCceEEeccCC
Q 001812 908 DMIEAHTCIR-H----GAVSLDGGILKEDGIISLGCGN 940 (1010)
Q Consensus 908 dM~~A~~~i~-~----giVTLDGeIIe~sGamTGGs~~ 940 (1010)
+|+.|+.++. . ++|||||++++++|+||||++.
T Consensus 621 ~l~~A~~l~~~~~~~~riVTl~G~~~~~~G~~tGG~~~ 658 (1163)
T COG1196 621 DLEQARRLARKLRIKYRIVTLDGDLVEPSGSITGGSRN 658 (1163)
T ss_pred CHHHHHHHHHhcCCCceEEecCCcEEeCCeeeecCCcc
Confidence 8888998877 2 2999999999999999999665
No 2
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=99.89 E-value=5.9e-22 Score=237.59 Aligned_cols=140 Identities=21% Similarity=0.329 Sum_probs=119.5
Q ss_pred CCceeeeccceeeeccchhhhHHHHhhhhhhhceeEecchHHHHHHHHhhhcCCccccchhhhhhhhcCcccCCeeEEEe
Q 001812 748 MEDVVGPVALIGTVCTNKLSRTLAEYLGEHQMLALVCRSFEAAFALEKYEQDGTIDRKCALHATAAALGKSIDGRYLVIC 827 (1010)
Q Consensus 748 l~GIiGvVAeLg~V~d~~lsa~LseyLGietmL~IVv~s~e~ak~le~yl~~g~id~~~~lh~~~~s~Kr~k~GRaTFLP 827 (1010)
.+|++|+|++|+.|+ +.+..|++.+||.. +.+|||+|.++|+.++.|+ ++++.||+||+|
T Consensus 520 ~~g~~g~l~dli~v~-~~y~~Aie~~lg~~-l~~ivv~~~~~a~~~i~~l------------------~~~~~gr~tflp 579 (1164)
T TIGR02169 520 IQGVHGTVAQLGSVG-ERYATAIEVAAGNR-LNNVVVEDDAVAKEAIELL------------------KRRKAGRATFLP 579 (1164)
T ss_pred CCCceecHHHhcCcC-HHHHHHHHHHhhhh-hCCEEECCHHHHHHHHHHH------------------HhcCCCCeeecc
Confidence 579999999999997 45555699999964 7799999999999999999 888999999999
Q ss_pred cCCCCCCCCCCCCCCccccccCCCCCCCCCCCCCCceEEEeccccccccccccccccCCCchHhHHHHhhcceEEEechh
Q 001812 828 LEGIRPYSGKFGSNDPQRKLALPAPTLPKGNIPAGFVGYAVNMVNLDDHHMHIRTSAGNGLRETLLYRLFGKLQVYKTRK 907 (1010)
Q Consensus 828 Ln~IRP~~~~~~~~dpQr~L~L~~P~L~~g~~~~GFIGyAVNLI~~D~k~~~~~T~~g~GLRetLF~~LFG~tlVfeT~e 907 (1010)
|+.|++.... . .+ ..++|++|+|.++|+|++.|. .++.++||+|+|++
T Consensus 580 l~~~~~~~~~-------------~-~~---~~~~~~~~~~~~~i~~~~~~~------------~~~~~~lg~~~v~~--- 627 (1164)
T TIGR02169 580 LNKMRDERRD-------------L-SI---LSEDGVIGFAVDLVEFDPKYE------------PAFKYVFGDTLVVE--- 627 (1164)
T ss_pred HhhcCCCCCC-------------c-cc---ccCCCchHHHHHHccCcHHHH------------HHHHHHCCCeEEEc---
Confidence 9999863220 0 11 225799999999999999998 79999999999988
Q ss_pred cHHHHHHhhc-CceEEccCceeecCceEEeccC
Q 001812 908 DMIEAHTCIR-HGAVSLDGGILKEDGIISLGCG 939 (1010)
Q Consensus 908 dM~~A~~~i~-~giVTLDGeIIe~sGamTGGs~ 939 (1010)
+++.|..+++ .++|||||++++++|+||||+.
T Consensus 628 ~l~~a~~~~~~~~~vTldG~~~~~~G~~tgG~~ 660 (1164)
T TIGR02169 628 DIEAARRLMGKYRMVTLEGELFEKSGAMTGGSR 660 (1164)
T ss_pred CHHHHHHHhcCCcEEEeCceeEcCCcCccCCCC
Confidence 7888998885 3399999999999999999973
No 3
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=99.81 E-value=1.2e-18 Score=208.36 Aligned_cols=178 Identities=13% Similarity=0.118 Sum_probs=128.0
Q ss_pred CCCceeeeccceeeeccchhhhHHHHhhhhhhhceeEecchHHHHHHHHhhhcCCccccchhhhhhhhcCcccCCeeEEE
Q 001812 747 FMEDVVGPVALIGTVCTNKLSRTLAEYLGEHQMLALVCRSFEAAFALEKYEQDGTIDRKCALHATAAALGKSIDGRYLVI 826 (1010)
Q Consensus 747 ~l~GIiGvVAeLg~V~d~~lsa~LseyLGietmL~IVv~s~e~ak~le~yl~~g~id~~~~lh~~~~s~Kr~k~GRaTFL 826 (1010)
.++|++|-.++||.+|..|- .|+++|-+ .+-+|||+|.+.|+..+.|+ ++++.||+||+
T Consensus 614 ~i~Gf~GRLGDLg~Id~kYD-vAIsTac~--~LdyiVVdt~e~aq~cI~fl------------------~~~nLgraTFi 672 (1293)
T KOG0996|consen 614 RIPGFYGRLGDLGAIDEKYD-VAISTACA--RLDYIVVDTIETAQECINFL------------------KKNNLGRATFI 672 (1293)
T ss_pred CCCccccccccccccchHHH-HHHHHhcc--ccceEEeccHHHHHHHHHHH------------------HHcCCCceeEE
Confidence 47899999999999965555 45777433 25599999999999999999 89999999999
Q ss_pred ecCCCCCCCCCCCCCCccccccCCCCCCCCCCCCCCceEEEecccccc-ccccccccccCCCchHhHHHHhhcceEEEec
Q 001812 827 CLEGIRPYSGKFGSNDPQRKLALPAPTLPKGNIPAGFVGYAVNMVNLD-DHHMHIRTSAGNGLRETLLYRLFGKLQVYKT 905 (1010)
Q Consensus 827 PLn~IRP~~~~~~~~dpQr~L~L~~P~L~~g~~~~GFIGyAVNLI~~D-~k~~~~~T~~g~GLRetLF~~LFG~tlVfeT 905 (1010)
+||.|+-....+. ++|.+ .+-| .-.+||+|+ +++. +.||+++++|+|++
T Consensus 673 ~LDki~~~~~~l~--~i~tp--envP-------------RLfDLv~~~d~~~r------------~aFYfaLrdtLV~d- 722 (1293)
T KOG0996|consen 673 ILDKIKDHQKKLA--PITTP--ENVP-------------RLFDLVKCKDEKFR------------PAFYFALRDTLVAD- 722 (1293)
T ss_pred ehHhhhhhhhccC--CCCCC--CCcc-------------hHhhhhccCCHHHH------------HHHHHHHhhhhhhc-
Confidence 9999995433211 11111 1112 245899997 9998 89999999999988
Q ss_pred hhcHHHHHHhhcC-----ceEEccCceeecCceEEeccCCC-ceeeccc--c-ccCchHHHHHHHHHHHHHHHHHHHHHH
Q 001812 906 RKDMIEAHTCIRH-----GAVSLDGGILKEDGIISLGCGNP-TICFPIV--R-TRISTQSIEALKQIEEKKLELDGIMQL 976 (1010)
Q Consensus 906 ~edM~~A~~~i~~-----giVTLDGeIIe~sGamTGGs~~~-~v~F~~~--~-~~~~~~~~~l~~ql~~l~~e~~~l~e~ 976 (1010)
++++|-+++.. ++|||||.+|+.+|+||||...+ +-+-+.. . .-.+.....+++++..+..+.+.+.+.
T Consensus 723 --~LeQAtRiaygk~rr~RVvTL~G~lIe~SGtmtGGG~~v~~g~mg~~~~~t~~s~~~v~~le~~l~~~~~~~~~~~~~ 800 (1293)
T KOG0996|consen 723 --NLEQATRIAYGKDRRWRVVTLDGSLIEKSGTMTGGGKKVKGGRMGTSIRVTGVSKESVEKLERALSKMSDKARQHQEQ 800 (1293)
T ss_pred --CHHHHHHHhhcCCCceEEEEecceeecccccccCCCCcCCCCCCCCccccCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999988762 29999999999999999996542 1111111 1 111334556666666655555555544
Q ss_pred H
Q 001812 977 I 977 (1010)
Q Consensus 977 i 977 (1010)
.
T Consensus 801 ~ 801 (1293)
T KOG0996|consen 801 L 801 (1293)
T ss_pred H
Confidence 3
No 4
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.77 E-value=6.6e-18 Score=198.99 Aligned_cols=138 Identities=20% Similarity=0.294 Sum_probs=112.9
Q ss_pred CCceeeeccceeeeccchhhhHHHHhhhhhhhceeEecchHHHHHHHHhhhcCCccccchhhhhhhhcCcccCCeeEEEe
Q 001812 748 MEDVVGPVALIGTVCTNKLSRTLAEYLGEHQMLALVCRSFEAAFALEKYEQDGTIDRKCALHATAAALGKSIDGRYLVIC 827 (1010)
Q Consensus 748 l~GIiGvVAeLg~V~d~~lsa~LseyLGietmL~IVv~s~e~ak~le~yl~~g~id~~~~lh~~~~s~Kr~k~GRaTFLP 827 (1010)
..|++|+|.+|++||+.+..| .++-+|.. +.+|||+|++.|..+..-+ ++-+.||.||+|
T Consensus 521 ~ngv~G~v~eL~~v~~~f~ta-vEvtaGNs-LF~iVVdndevATkIl~~~------------------n~m~~GrVTF~P 580 (1200)
T KOG0964|consen 521 PNGVFGTVYELIKVPNKFKTA-VEVTAGNS-LFNIVVDNDEVATKILRKL------------------NKMKGGRVTFMP 580 (1200)
T ss_pred ccccceehhhhhcCCHHHHhH-Hhhhcccc-eEEEEecccHHHHHHHHHH------------------HhccCCeeEEee
Confidence 489999999999997777765 67777753 6699999998888877666 677889999999
Q ss_pred cCCCCCCCCCCCCCCccccccCCCCCCCCCCCCCCceEEEeccccccccccccccccCCCchHhHHHHhhcceEEEechh
Q 001812 828 LEGIRPYSGKFGSNDPQRKLALPAPTLPKGNIPAGFVGYAVNMVNLDDHHMHIRTSAGNGLRETLLYRLFGKLQVYKTRK 907 (1010)
Q Consensus 828 Ln~IRP~~~~~~~~dpQr~L~L~~P~L~~g~~~~GFIGyAVNLI~~D~k~~~~~T~~g~GLRetLF~~LFG~tlVfeT~e 907 (1010)
||.|+++...++ .| .-++| -..-++|+|+|. .+|.++||+|+|+.
T Consensus 581 LNrl~~r~v~yp-~~---sdaiP----------------li~kl~y~p~fd------------ka~k~Vfgktivcr--- 625 (1200)
T KOG0964|consen 581 LNRLKARDVEYP-KD---SDAIP----------------LISKLRYEPQFD------------KALKHVFGKTIVCR--- 625 (1200)
T ss_pred cccCchhhccCC-CC---CCccc----------------hHHHhCcchhhH------------HHHHHHhCceEEec---
Confidence 999999655332 11 11111 234588999999 79999999999998
Q ss_pred cHHHHHHhhc-Cc--eEEccCceeecCceEEeccCC
Q 001812 908 DMIEAHTCIR-HG--AVSLDGGILKEDGIISLGCGN 940 (1010)
Q Consensus 908 dM~~A~~~i~-~g--iVTLDGeIIe~sGamTGGs~~ 940 (1010)
+|..|.++++ +. .|||||+.+..-|+||||+..
T Consensus 626 dl~qa~~~ak~~~ln~ITl~GDqvskkG~lTgGy~D 661 (1200)
T KOG0964|consen 626 DLEQALRLAKKHELNCITLSGDQVSKKGVLTGGYED 661 (1200)
T ss_pred cHHHHHHHHHhcCCCeEEeccceecccCCccccchh
Confidence 8999999999 44 899999999999999999975
No 5
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=99.75 E-value=9.6e-18 Score=198.29 Aligned_cols=276 Identities=18% Similarity=0.238 Sum_probs=178.0
Q ss_pred cchhHHhhhHHHHHHHHhhhhhhhhHHHHHHHHHHhHHHHHH--------------HHHHHhhcccccccC-CHHHHHHH
Q 001812 655 HMVPIMKIVNELESEVRNYGLCIGRHEKALKLLNDQKMEVEE--------------VLSKLQVSVEPYSLL-TKEEIIRR 719 (1010)
Q Consensus 655 ~~~~~~~~~~~lq~~l~~lG~kI~~~e~~Lk~Lksqk~~~~~--------------~i~dLq~~l~~~~~s-t~Eev~k~ 719 (1010)
+|.+.=..-..++-.++..-.++.+++++|+..+.++..+.+ .++.|...|..+... +.++..++
T Consensus 400 ql~~aK~~~~~~~t~~k~a~~k~e~~~~elk~~e~e~~t~~~~~~~~~~~ld~~q~eve~l~~~l~~l~~~~~~~e~l~q 479 (1174)
T KOG0933|consen 400 QLRDAKITLSEASTEIKQAKLKLEHLRKELKLREGELATASAEYVKDIEELDALQNEVEKLKKRLQSLGYKIGQEEALKQ 479 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHH
Confidence 344444455567778888888999999999998888544333 444444444444321 23333333
Q ss_pred --------HHhhcccccceeeeccc-ccCCCCCCCC-CCCceeeeccceeeeccchhhhHHHHhhhhhhhceeEecchHH
Q 001812 720 --------IKSIYQSAASVICCSTK-EFLCSKPRSN-FMEDVVGPVALIGTVCTNKLSRTLAEYLGEHQMLALVCRSFEA 789 (1010)
Q Consensus 720 --------I~~~ensAA~i~c~l~~-r~~~~~~~S~-~l~GIiGvVAeLg~V~d~~lsa~LseyLGietmL~IVv~s~e~ 789 (1010)
+-++.+.--..+-++.+ +..-..|..+ ....|.|+||.|++|+|..++.||...+|.+ +-+|||+|++.
T Consensus 480 ~~~~l~~~~~~lk~~~~~l~a~~~~~~f~Y~dP~~nfdrs~V~G~Va~Li~vkd~~~~tAle~~aGgr-LynvVv~te~t 558 (1174)
T KOG0933|consen 480 RRAKLHEDIGRLKDELDRLLARLANYEFTYQDPEPNFDRSKVKGLVAKLIKVKDRSYATALETTAGGR-LYNVVVDTEDT 558 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCccchHHHHHHHHHHHheeCcchHHHHHHHHhcCc-ceeEEeechHH
Confidence 11111110000000111 0001123333 4578999999999999999999999999985 77999999999
Q ss_pred HHHHHHhhhcCCccccchhhhhhhhcCcccCCeeEEEecCCCCCCCCCCCCCCccccccCCCCCCCCC-CCCCCceEEEe
Q 001812 790 AFALEKYEQDGTIDRKCALHATAAALGKSIDGRYLVICLEGIRPYSGKFGSNDPQRKLALPAPTLPKG-NIPAGFVGYAV 868 (1010)
Q Consensus 790 ak~le~yl~~g~id~~~~lh~~~~s~Kr~k~GRaTFLPLn~IRP~~~~~~~~dpQr~L~L~~P~L~~g-~~~~GFIGyAV 868 (1010)
++.|.. +-+.-.|.|.||||+|+.+... |+. ++.. ...++=+-.|+
T Consensus 559 gkqLLq--------------------~g~l~rRvTiIPLnKI~s~~~s-----~~v--------~~~ak~v~~~~v~~al 605 (1174)
T KOG0933|consen 559 GKQLLQ--------------------RGNLRRRVTIIPLNKIQSFVLS-----PNV--------LQAAKNVGNDNVELAL 605 (1174)
T ss_pred HHHHhh--------------------cccccceeEEEechhhhhccCC-----HhH--------HHHHHHhcCchHHHHH
Confidence 987633 1233468999999999987652 111 1110 02456677899
Q ss_pred ccccccccccccccccCCCchHhHHHHhhcceEEEechhcHHHHHHhhcCc-----eEEccCceeecCceEEeccCCCce
Q 001812 869 NMVNLDDHHMHIRTSAGNGLRETLLYRLFGKLQVYKTRKDMIEAHTCIRHG-----AVSLDGGILKEDGIISLGCGNPTI 943 (1010)
Q Consensus 869 NLI~~D~k~~~~~T~~g~GLRetLF~~LFG~tlVfeT~edM~~A~~~i~~g-----iVTLDGeIIe~sGamTGGs~~~~v 943 (1010)
+||.||+.+. ++..|+||.|+|++ +++.|+.++=+. .|||||+++.|+|.+|||+++++-
T Consensus 606 ~Li~yd~~l~------------~amefvFG~tlVc~---~~d~AKkVaf~~~i~~rsVTl~GDV~dP~GtlTGGs~~~~a 670 (1174)
T KOG0933|consen 606 SLIGYDDELK------------KAMEFVFGSTLVCD---SLDVAKKVAFDPKIRTRSVTLEGDVYDPSGTLTGGSRSKGA 670 (1174)
T ss_pred HHhcCCHHHH------------HHHHHHhCceEEec---CHHHHHHhhcccccccceeeecCceeCCCCcccCCCCCCcc
Confidence 9999999999 89999999999999 778899776543 699999999999999999997431
Q ss_pred eeccccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001812 944 CFPIVRTRISTQSIEALKQIEEKKLELDGIMQLIQESNKA 983 (1010)
Q Consensus 944 ~F~~~~~~~~~~~~~l~~ql~~l~~e~~~l~e~i~~~~~~ 983 (1010)
. ....-..+.+++.+++....+++.++.+++..+..
T Consensus 671 ~----~L~~l~~l~~~~~~~~~~q~el~~le~eL~~le~~ 706 (1174)
T KOG0933|consen 671 D----LLRQLQKLKQAQKELRAIQKELEALERELKSLEAQ 706 (1174)
T ss_pred c----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 01011234445555555555555555555544433
No 6
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.67 E-value=1.6e-15 Score=181.00 Aligned_cols=143 Identities=20% Similarity=0.229 Sum_probs=124.2
Q ss_pred CCCceeeeccceeeeccchhhhHHHHhhhhhhhceeEecchHHHHHHHHhhhcCCccccchhhhhhhhcCcccCCeeEEE
Q 001812 747 FMEDVVGPVALIGTVCTNKLSRTLAEYLGEHQMLALVCRSFEAAFALEKYEQDGTIDRKCALHATAAALGKSIDGRYLVI 826 (1010)
Q Consensus 747 ~l~GIiGvVAeLg~V~d~~lsa~LseyLGietmL~IVv~s~e~ak~le~yl~~g~id~~~~lh~~~~s~Kr~k~GRaTFL 826 (1010)
+.+|++|.|.+|+.-.-.++..|+++.||. .|-+|||+|...|+..|.|+ |.++.|-.|||
T Consensus 500 ~fPgv~GrviDLc~pt~kkyeiAvt~~Lgk-~~daIiVdte~ta~~CI~yl------------------Keqr~~~~TFl 560 (1141)
T KOG0018|consen 500 LFPGVYGRVIDLCQPTQKKYEIAVTVVLGK-NMDAIIVDTEATARDCIQYL------------------KEQRLEPMTFL 560 (1141)
T ss_pred hCCCccchhhhcccccHHHHHHHHHHHHhc-ccceEEeccHHHHHHHHHHH------------------HHhccCCcccc
Confidence 679999999999999879999999999997 59999999999999999999 89999999999
Q ss_pred ecCCCCCCCCCCCCCCccccccCCCCCCCCCCCCCCceEEEeccccccccccccccccCCCchHhHHHHhhcceEEEech
Q 001812 827 CLEGIRPYSGKFGSNDPQRKLALPAPTLPKGNIPAGFVGYAVNMVNLDDHHMHIRTSAGNGLRETLLYRLFGKLQVYKTR 906 (1010)
Q Consensus 827 PLn~IRP~~~~~~~~dpQr~L~L~~P~L~~g~~~~GFIGyAVNLI~~D~k~~~~~T~~g~GLRetLF~~LFG~tlVfeT~ 906 (1010)
||++|+-...+ ..|+ .+.| +-.|+|.|+|+++|+ .+..|++|+++|++|+
T Consensus 561 Pld~i~v~~~~--------------e~lr---~~~g-~rlv~Dvi~ye~e~e------------ka~~~a~gn~Lvcds~ 610 (1141)
T KOG0018|consen 561 PLDSIRVKPVN--------------EKLR---ELGG-VRLVIDVINYEPEYE------------KAVQFACGNALVCDSV 610 (1141)
T ss_pred chhhhhcCccc--------------cccc---CcCC-eEEEEEecCCCHHHH------------HHHHHHhccceecCCH
Confidence 99999864331 1332 3566 889999999999999 7999999999999955
Q ss_pred hcHHHHHHhhcC-----ceEEccCceeecCceEEeccCCC
Q 001812 907 KDMIEAHTCIRH-----GAVSLDGGILKEDGIISLGCGNP 941 (1010)
Q Consensus 907 edM~~A~~~i~~-----giVTLDGeIIe~sGamTGGs~~~ 941 (1010)
++ |+.++=. .+|||||-++..+|.||||+...
T Consensus 611 e~---Ar~l~y~~~~r~k~valdGtl~~ksGlmsGG~s~~ 647 (1141)
T KOG0018|consen 611 ED---ARDLAYGGEIRFKVVALDGTLIHKSGLMSGGSSGA 647 (1141)
T ss_pred HH---HHHhhhcccccceEEEeeeeEEeccceecCCccCC
Confidence 55 8866531 18999999999999999999873
No 7
>PF06470 SMC_hinge: SMC proteins Flexible Hinge Domain; InterPro: IPR010935 This entry represents the hinge region of the SMC (Structural Maintenance of Chromosomes) family of proteins. The hinge region is responsible for formation of the DNA interacting dimer. It is also possible that the precise structure of it is an essential determinant of the specificity of the DNA-protein interaction [].; GO: 0005515 protein binding, 0005524 ATP binding, 0051276 chromosome organization, 0005694 chromosome; PDB: 2WD5_A 1GXL_C 1GXK_A 1GXJ_A 3NWC_B 3L51_A.
Probab=99.58 E-value=1.2e-14 Score=133.48 Aligned_cols=118 Identities=25% Similarity=0.302 Sum_probs=99.1
Q ss_pred CceeeeccceeeeccchhhhHHHHhhhhhhhceeEecchHHHHHHHHhhhcCCccccchhhhhhhhcCcccCCeeEEEec
Q 001812 749 EDVVGPVALIGTVCTNKLSRTLAEYLGEHQMLALVCRSFEAAFALEKYEQDGTIDRKCALHATAAALGKSIDGRYLVICL 828 (1010)
Q Consensus 749 ~GIiGvVAeLg~V~d~~lsa~LseyLGietmL~IVv~s~e~ak~le~yl~~g~id~~~~lh~~~~s~Kr~k~GRaTFLPL 828 (1010)
+||+|.|++|++| ++.+..+++.+||. .+.+|||+|.+.|+.+++++ ++++.||+||+||
T Consensus 2 ~gv~G~l~dli~v-~~~~~~Ave~~LG~-~l~~iVV~~~~~a~~~i~~l------------------~~~~~gr~~~i~l 61 (120)
T PF06470_consen 2 PGVLGRLADLIEV-DPKYEKAVEAALGG-RLQAIVVEDEETAKKIIEFL------------------KENKLGRATFIPL 61 (120)
T ss_dssp TTEEEEGGGSEEE-SGGGHHHHHHHHGG-GGGSEEESSHHHHHHHHHHH------------------HHTTSCEEEEEET
T ss_pred CCeeeeHHhceec-CHHHHHHHHHHHHH-hhceEEECcHHHHHHHHHHH------------------hhccCCeEEEEEC
Confidence 6999999999999 56666779999996 48899999999999999999 6778999999999
Q ss_pred CCCCCCCCCCCCCCccccccCCCCCCCCCCCCCCceEEEeccccc-cccccccccccCCCchHhHHHHhhcceEEEechh
Q 001812 829 EGIRPYSGKFGSNDPQRKLALPAPTLPKGNIPAGFVGYAVNMVNL-DDHHMHIRTSAGNGLRETLLYRLFGKLQVYKTRK 907 (1010)
Q Consensus 829 n~IRP~~~~~~~~dpQr~L~L~~P~L~~g~~~~GFIGyAVNLI~~-D~k~~~~~T~~g~GLRetLF~~LFG~tlVfeT~e 907 (1010)
+.+++..... ..+. ...+|..+.+.++|++ |+++. .++.+|||+++|++
T Consensus 62 ~~~~~~~~~~--------------~~~~-~~~~~~~~~l~d~i~~~d~~~~------------~~~~~llg~~~vv~--- 111 (120)
T PF06470_consen 62 DKIRSRSSAS--------------SADQ-IRPPGGAGPLIDLIEFPDEEYR------------PALEFLLGDVVVVD--- 111 (120)
T ss_dssp TTTGGGTTSC--------------CCGG-HHSTTSEEEGGGGEEESCGGGH------------HHHHHHHTTEEEES---
T ss_pred cccccccccc--------------chhh-ccCCcchHHHHHhcccCcHHHH------------HHHHHHcCCEEEEC---
Confidence 9998755421 0000 0157999999999999 88998 79999999999988
Q ss_pred cHHHHHHhh
Q 001812 908 DMIEAHTCI 916 (1010)
Q Consensus 908 dM~~A~~~i 916 (1010)
+++.|+.++
T Consensus 112 ~l~~A~~la 120 (120)
T PF06470_consen 112 DLEEARKLA 120 (120)
T ss_dssp SHHHHHHHH
T ss_pred CHHHHHHhC
Confidence 788898874
No 8
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=99.23 E-value=5.1e-10 Score=134.88 Aligned_cols=185 Identities=21% Similarity=0.254 Sum_probs=124.7
Q ss_pred CCceeeeccceeeeccchhhhHHHHhhhhhhhceeEecchHHHHHHHHhhhcCCccccchhhhhhhhcCcccCCeeEEEe
Q 001812 748 MEDVVGPVALIGTVCTNKLSRTLAEYLGEHQMLALVCRSFEAAFALEKYEQDGTIDRKCALHATAAALGKSIDGRYLVIC 827 (1010)
Q Consensus 748 l~GIiGvVAeLg~V~d~~lsa~LseyLGietmL~IVv~s~e~ak~le~yl~~g~id~~~~lh~~~~s~Kr~k~GRaTFLP 827 (1010)
..|++|.+++|+.++ +.+..++...+|. .+-+|||++.+.|...+.++ +....|+.+|+|
T Consensus 518 ~~~~~g~~~~li~~~-~~~~~a~~~~~g~-~~~~ivv~~~~~a~~~~~~l------------------~~~~~g~~~~l~ 577 (1179)
T TIGR02168 518 LSGILGVLSELISVD-EGYEAAIEAALGG-RLQAVVVENLNAAKKAIAFL------------------KQNELGRVTFLP 577 (1179)
T ss_pred cCCCccchhceeeeC-hhHHHHHHHHHHH-HhcCeEECCHHHHHHHHHHh------------------cccCCCcEEEee
Confidence 367999999999995 4555567777774 46679999998888777777 677899999999
Q ss_pred cCCCCCCCCCCCCCCccccccCCCCCCCCCCCCCCceEEEeccccccccccccccccCCCchHhHHHHhhcceEEEechh
Q 001812 828 LEGIRPYSGKFGSNDPQRKLALPAPTLPKGNIPAGFVGYAVNMVNLDDHHMHIRTSAGNGLRETLLYRLFGKLQVYKTRK 907 (1010)
Q Consensus 828 Ln~IRP~~~~~~~~dpQr~L~L~~P~L~~g~~~~GFIGyAVNLI~~D~k~~~~~T~~g~GLRetLF~~LFG~tlVfeT~e 907 (1010)
++.++..... . +..+......|.+++|.++++|++.+. .++.+.+|.+.++.
T Consensus 578 l~~i~~~~~~----~---------~~~~~~~~~~~~~~~~~dl~~~~~~~~------------~~~~~~~~~~~ivt--- 629 (1179)
T TIGR02168 578 LDSIKGTEIQ----G---------NDREILKNIEGFLGVAKDLVKFDPKLR------------KALSYLLGGVLVVD--- 629 (1179)
T ss_pred cccccccccc----c---------cchhhccccCchhHHHHHHhcccHhHH------------HHHHHHhCCceEeC---
Confidence 9999753210 0 000112235799999999999999887 67888899977766
Q ss_pred cHHHHHHhhc----Cc-eEEccCceeecCceEEeccCCCceeeccccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001812 908 DMIEAHTCIR----HG-AVSLDGGILKEDGIISLGCGNPTICFPIVRTRISTQSIEALKQIEEKKLELDGIMQLIQESNK 982 (1010)
Q Consensus 908 dM~~A~~~i~----~g-iVTLDGeIIe~sGamTGGs~~~~v~F~~~~~~~~~~~~~l~~ql~~l~~e~~~l~e~i~~~~~ 982 (1010)
+++.|..++. .| +||++|+++..||+++||+.... ........++..++.++++++.++..+.+++...+.
T Consensus 630 ~l~~a~~~~~~~~~~g~~v~~~G~~~~~gg~~~~~~~~~~----~~~~~l~~e~~~l~~~~~~l~~~l~~~~~~~~~~~~ 705 (1179)
T TIGR02168 630 DLDNALELAKKLRPGYRIVTLDGDLVRPGGVITGGSAKTN----SSILERRREIEELEEKIEELEEKIAELEKALAELRK 705 (1179)
T ss_pred CHHHHHHHHHHcCCCceEEecCCEEEcCCceEecCccccc----cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6778887764 44 89999999888999887753100 000112234444444444444444444444444433
Q ss_pred HH
Q 001812 983 AL 984 (1010)
Q Consensus 983 ~l 984 (1010)
.+
T Consensus 706 ~l 707 (1179)
T TIGR02168 706 EL 707 (1179)
T ss_pred HH
Confidence 33
No 9
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=97.50 E-value=0.0011 Score=81.06 Aligned_cols=100 Identities=21% Similarity=0.180 Sum_probs=65.3
Q ss_pred HHHHhhcceEEEechhcHHHHHHh-----hcC-ceEE-------------ccCceeecCce-E-EeccCCCceeeccccc
Q 001812 892 LLYRLFGKLQVYKTRKDMIEAHTC-----IRH-GAVS-------------LDGGILKEDGI-I-SLGCGNPTICFPIVRT 950 (1010)
Q Consensus 892 LF~~LFG~tlVfeT~edM~~A~~~-----i~~-giVT-------------LDGeIIe~sGa-m-TGGs~~~~v~F~~~~~ 950 (1010)
++.+++|.+.+..++..+..|+.. .+. .+|| +||+++.++|. + +||+.... ..
T Consensus 593 ~~~~~~~~~~~~~dl~~~~~~~~~~~~~~~~~~~ivt~l~~a~~~~~~~~~~g~~v~~~G~~~~~gg~~~~~----~~-- 666 (1179)
T TIGR02168 593 ILKNIEGFLGVAKDLVKFDPKLRKALSYLLGGVLVVDDLDNALELAKKLRPGYRIVTLDGDLVRPGGVITGG----SA-- 666 (1179)
T ss_pred hccccCchhHHHHHHhcccHhHHHHHHHHhCCceEeCCHHHHHHHHHHcCCCceEEecCCEEEcCCceEecC----cc--
Confidence 455677777776655553333322 223 3899 79999999994 4 47653222 11
Q ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 001812 951 RISTQSIEALKQIEEKKLELDGIMQLIQESNKALEKDLEKLKNSEDK 997 (1010)
Q Consensus 951 ~~~~~~~~l~~ql~~l~~e~~~l~e~i~~~~~~l~~~~~~~~kk~~~ 997 (1010)
....++..+..+++.++.++..+...+.+.+..+..+...+..-..+
T Consensus 667 ~~~~~~~~l~~e~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~ 713 (1179)
T TIGR02168 667 KTNSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEE 713 (1179)
T ss_pred ccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12356778888888888888888888888888888776665444433
No 10
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=97.33 E-value=0.011 Score=73.75 Aligned_cols=202 Identities=18% Similarity=0.211 Sum_probs=111.1
Q ss_pred CCCceeeeccceeeeccchhhhHHHHhhhhhhhceeEecchHHHHHHHHhhhcCCccccchhhhhhhhcCcccCCeeEEE
Q 001812 747 FMEDVVGPVALIGTVCTNKLSRTLAEYLGEHQMLALVCRSFEAAFALEKYEQDGTIDRKCALHATAAALGKSIDGRYLVI 826 (1010)
Q Consensus 747 ~l~GIiGvVAeLg~V~d~~lsa~LseyLGietmL~IVv~s~e~ak~le~yl~~g~id~~~~lh~~~~s~Kr~k~GRaTFL 826 (1010)
+..-.+|+++..+++.++..+.+++++||. .+-+-||.|..++..|.... ++.+-... |.|.+
T Consensus 491 f~~~P~GPlG~~Vtl~~~KWa~aIE~~L~n-~lnaFiv~sh~D~~~Lr~i~---------------~~~~~~~~-~ptIv 553 (1074)
T KOG0250|consen 491 FQTPPKGPLGKYVTLKEPKWALAIERCLGN-LLNAFIVTSHKDARILRAIM---------------RRLKIPGN-RPTIV 553 (1074)
T ss_pred CCCCCCCCccceeEecCcHHHHHHHHHHHH-hhhhheeCCHhhHHHHHHHH---------------HHcCCCCC-CCcEE
Confidence 456678999999999999999999999995 24489999998888777666 22222222 54433
Q ss_pred --ecCCCCCCCCCCCCCCccccccCCCCCCCCCCCCCCceEEEeccccccccccccccccCCCchHhHHHHhhc--ceEE
Q 001812 827 --CLEGIRPYSGKFGSNDPQRKLALPAPTLPKGNIPAGFVGYAVNMVNLDDHHMHIRTSAGNGLRETLLYRLFG--KLQV 902 (1010)
Q Consensus 827 --PLn~IRP~~~~~~~~dpQr~L~L~~P~L~~g~~~~GFIGyAVNLI~~D~k~~~~~T~~g~GLRetLF~~LFG--~tlV 902 (1010)
|.+..- |... ..|+- ..|- -+..+++|.-.-. +++=-..| ++++
T Consensus 554 vs~~~~~~-y~~~---~~p~~-------------~~pT----il~~le~ddp~V~-----------N~LID~s~iE~~lL 601 (1074)
T KOG0250|consen 554 VSSFTPFD-YSVG---RNPGY-------------EFPT----ILDALEFDDPEVL-----------NVLIDKSGIEQVLL 601 (1074)
T ss_pred EecCCccc-cccc---cCCCC-------------CCCc----eeeeeecCChHHH-----------HHhhhhccceeEEE
Confidence 221111 1110 01110 0111 2233444332211 12222222 3445
Q ss_pred EechhcHHHHHHhhcCc--------eEEccCceeecCce---EEeccCC--C---ceeecccc--ccCchHHHHHHHHHH
Q 001812 903 YKTRKDMIEAHTCIRHG--------AVSLDGGILKEDGI---ISLGCGN--P---TICFPIVR--TRISTQSIEALKQIE 964 (1010)
Q Consensus 903 feT~edM~~A~~~i~~g--------iVTLDGeIIe~sGa---mTGGs~~--~---~v~F~~~~--~~~~~~~~~l~~ql~ 964 (1010)
.+ |=..|..+++.+ +.||||+.+-.+|. ++.|... . .+.|.... ..+-.+++++++++.
T Consensus 602 iE---dk~Ea~~~m~s~~~p~n~~~aytldg~~~~~~g~~~~~ySt~~~~~r~~~~~~~s~d~~ie~le~e~~~l~~~~~ 678 (1074)
T KOG0250|consen 602 IE---DKKEAREFMQSDKPPANVTKAYTLDGRQIFAGGPNYRVYSTRGTRARRPGVDEFSFDDEIEDLEREASRLQKEIL 678 (1074)
T ss_pred ec---chHHHHHHHhcCCCCccceeeeccCccccccCCCCcceeccCCCCCCCccccchhHhHHHHHHHHHHHHHHHHHH
Confidence 44 555688887722 89999999999888 4444432 2 44554442 222234555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 001812 965 EKKLELDGIMQLIQESNKALEKDLEKLKNSEDKFNS 1000 (1010)
Q Consensus 965 ~l~~e~~~l~e~i~~~~~~l~~~~~~~~kk~~~~~~ 1000 (1010)
++...++.+++.++..+..++++.+..+..+..-.+
T Consensus 679 ~l~~~~~~~e~~l~e~~~~~~~l~~~~~q~~~~~~~ 714 (1074)
T KOG0250|consen 679 ELENQRREAEKNLEELEKKLRELSEHIEQIKRRIRK 714 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555556666666666655555555555444444333
No 11
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=86.16 E-value=9.7 Score=48.76 Aligned_cols=50 Identities=20% Similarity=0.379 Sum_probs=42.4
Q ss_pred CCCceeeeccceeeeccchhhhHHHHhhhhhhhceeEecchHHHHHHHHh
Q 001812 747 FMEDVVGPVALIGTVCTNKLSRTLAEYLGEHQMLALVCRSFEAAFALEKY 796 (1010)
Q Consensus 747 ~l~GIiGvVAeLg~V~d~~lsa~LseyLGietmL~IVv~s~e~ak~le~y 796 (1010)
+-..|+|++.-=+.|++...+++|+..+|..+.-+.||.++++-..+-+-
T Consensus 446 FK~~vyeP~~m~l~~k~~~~A~~lEn~v~~~~~~~Fi~~~~eD~~lf~~~ 495 (1072)
T KOG0979|consen 446 FKDEVYEPPIMTLNVKNAEFAKYLENFVGFNDLKAFICCDSEDYLLFVKK 495 (1072)
T ss_pred hcccccCCceEEEecCChHHHHHHHcccCccccceeeeechHHHHHHHHH
Confidence 66899999888889999999999999999998889999998765554333
No 12
>PRK04863 mukB cell division protein MukB; Provisional
Probab=83.03 E-value=2.6 Score=56.03 Aligned_cols=47 Identities=15% Similarity=0.058 Sum_probs=39.1
Q ss_pred CCCceeeeccceee-eccchhhhHHHHhhhhhhhceeEecchHHHHHHHHhh
Q 001812 747 FMEDVVGPVALIGT-VCTNKLSRTLAEYLGEHQMLALVCRSFEAAFALEKYE 797 (1010)
Q Consensus 747 ~l~GIiGvVAeLg~-V~d~~lsa~LseyLGietmL~IVv~s~e~ak~le~yl 797 (1010)
.++||+ |++|+. |+.++.. +++.++|. .+-+|||+|.++|+..+.++
T Consensus 681 ~~~Gvl--vsel~~~v~~~~~~-~~~A~lg~-~~~~iVv~d~~~A~~ai~~L 728 (1486)
T PRK04863 681 RFGGVL--LSEIYDDVSLEDAP-YFSALYGP-ARHAIVVPDLSDAAEQLAGL 728 (1486)
T ss_pred hcCCee--hhHhhhccCcchHH-HHHHHHHh-hhCeEEeCCHHHHHHHHHhc
Confidence 478999 999999 8666655 47888886 37799999999999999998
No 13
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=65.39 E-value=20 Score=36.45 Aligned_cols=67 Identities=21% Similarity=0.199 Sum_probs=49.3
Q ss_pred chhHHhhhHHHHHHHHhhhhhhhhHHHHHHHHHHh---------HHHHHHHHHHHhhcccccccC----CHHHHHHHHHh
Q 001812 656 MVPIMKIVNELESEVRNYGLCIGRHEKALKLLNDQ---------KMEVEEVLSKLQVSVEPYSLL----TKEEIIRRIKS 722 (1010)
Q Consensus 656 ~~~~~~~~~~lq~~l~~lG~kI~~~e~~Lk~Lksq---------k~~~~~~i~dLq~~l~~~~~s----t~Eev~k~I~~ 722 (1010)
+..+=..-..|+++|..+..+++.++.+|..|.++ ..++++++..|+.+|.++... +++++.+...+
T Consensus 74 l~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~~~~~vs~ee~~~~~~~ 153 (169)
T PF07106_consen 74 LAELDAEIKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLRSGSKPVSPEEKEKLEKE 153 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Confidence 33455567889999999999999999999888766 677777888888888877542 46665555443
No 14
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=53.29 E-value=49 Score=29.41 Aligned_cols=44 Identities=25% Similarity=0.344 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHh
Q 001812 963 IEEKKLELDGIMQLIQESNKALEKDLEKLKNSEDKFNSFMDLWQ 1006 (1010)
Q Consensus 963 l~~l~~e~~~l~e~i~~~~~~l~~~~~~~~kk~~~~~~~~~~~~ 1006 (1010)
+.+++.++.++...+..++++.+..++..++=++...+.|+..+
T Consensus 2 i~elEn~~~~~~~~i~tvk~en~~i~~~ve~i~envk~ll~lYE 45 (55)
T PF05377_consen 2 IDELENELPRIESSINTVKKENEEISESVEKIEENVKDLLSLYE 45 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555555555555555566666666554
No 15
>PF04949 Transcrip_act: Transcriptional activator; InterPro: IPR007033 Golgins are a family of coiled-coil proteins associated with the Golgi apparatus necessary for tethering events in membrane fusion and as structural supports for Golgi cisternae []. This entry represents proteins annotated as RAB6-interacting golgins.
Probab=53.10 E-value=58 Score=34.08 Aligned_cols=41 Identities=12% Similarity=0.260 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHh
Q 001812 966 KKLELDGIMQLIQESNKALEKDLEKLKNSEDKFNSFMDLWQ 1006 (1010)
Q Consensus 966 l~~e~~~l~e~i~~~~~~l~~~~~~~~kk~~~~~~~~~~~~ 1006 (1010)
++-++..++..|+.+..+|.-+..++.||+.+|...+....
T Consensus 82 ~RkEv~~vRkkID~vNreLkpl~~~cqKKEkEykealea~n 122 (159)
T PF04949_consen 82 MRKEVEMVRKKIDSVNRELKPLGQSCQKKEKEYKEALEAFN 122 (159)
T ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 34567778889999999999999999999999999887664
No 16
>PF07439 DUF1515: Protein of unknown function (DUF1515); InterPro: IPR010889 This family consists of several hypothetical bacterial proteins of around 130 residues in length. Members of this family seem to be found exclusively in Rhizobium species. The function of this family is unknown.
Probab=49.50 E-value=67 Score=32.10 Aligned_cols=53 Identities=11% Similarity=0.114 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhc
Q 001812 957 IEALKQIEEKKLELDGIMQLIQESNKALEKDLEKLKNSEDKFNSFMDLWQTSL 1009 (1010)
Q Consensus 957 ~~l~~ql~~l~~e~~~l~e~i~~~~~~l~~~~~~~~kk~~~~~~~~~~~~~~~ 1009 (1010)
..+-+|+..++.+...+++++++-+...+..+-+.-++=.+.++-+..+|+++
T Consensus 4 a~~~~q~~~l~~~v~~lRed~r~SEdrsa~SRa~mhrRlDElV~Rv~~lEs~~ 56 (112)
T PF07439_consen 4 AGLHQQLGTLNAEVKELREDIRRSEDRSAASRASMHRRLDELVERVTTLESSV 56 (112)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHHHHHHHH
Confidence 46788999999999999999999999999999999999999999999888764
No 17
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=48.21 E-value=73 Score=35.43 Aligned_cols=53 Identities=19% Similarity=0.268 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhh
Q 001812 955 QSIEALKQIEEKKLELDGIMQLIQESNKALEKDLEKLKNSEDKFNSFMDLWQT 1007 (1010)
Q Consensus 955 ~~~~l~~ql~~l~~e~~~l~e~i~~~~~~l~~~~~~~~kk~~~~~~~~~~~~~ 1007 (1010)
+-+++..++++++.+.+...+.+++++....+..++|++-..+|-++-+.|..
T Consensus 150 EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~E 202 (290)
T COG4026 150 EKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDE 202 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHH
Confidence 45567777888888888888888888888888888888888788777777753
No 18
>PF07900 DUF1670: Protein of unknown function (DUF1670); InterPro: IPR012872 The hypothetical eukaryotic proteins found in this family are of unknown function.
Probab=43.96 E-value=27 Score=38.27 Aligned_cols=73 Identities=22% Similarity=0.271 Sum_probs=54.3
Q ss_pred CCCCc----chhhHHHHhhhhhc---cccccccceEEEeecceeeeccccccccccCcccccCccceeeeecCCc-----
Q 001812 426 ILLPG----SVIKMLKLEMFDAF---YNNVKKGLEVELNVDGFCIEDQLGLRRKVDGYGCIDLSGLLKVKAGYGK----- 493 (1010)
Q Consensus 426 ~L~Pg----~~~~~~vle~FD~~---~N~v~eG~ev~i~~~G~~~~d~~g~~~kv~~~gcidLsg~lkvtagyg~----- 493 (1010)
...|| .++-+.+.++||.| .|+++.|.=+-..++..+ ++||||
T Consensus 6 ~~~~g~~v~~~i~~~~~~~~~~~y~~~~~l~~GQi~w~avs~~e-------------------------~~~~gK~l~~~ 60 (220)
T PF07900_consen 6 GFIGGDKVVRMIVELVKSTFDQYYPEPEELKPGQILWLAVSADE-------------------------PPSYGKPLKDC 60 (220)
T ss_pred CCCChHHHHHHHHHHHHHHHhccCCChhhCCCCceEEEEeccCC-------------------------CccCCCchhhc
Confidence 45666 45666677889998 599999999999888766 788999
Q ss_pred ---ceeEEEecC--Cce---eeecchhhHHHHHhhhcC
Q 001812 494 ---NVSLSVLSD--NGV---IFKQDFQTEKRELRVISG 523 (1010)
Q Consensus 494 ---~~slsv~~~--~~~---if~~~~~~~~r~lr~~~~ 523 (1010)
.|.|||... .+. -|++-=..++|++|+..|
T Consensus 61 ~lvpV~LTl~~~ED~e~~~~~~~~~elr~~rIvRl~~E 98 (220)
T PF07900_consen 61 KLVPVILTLVDPEDIEMRNEKYGLSELRKHRIVRLTNE 98 (220)
T ss_pred ceeeEEEEecCHHHHHHHHhhcCHHHHHHHHHHHHHHH
Confidence 488888875 222 244445567788888887
No 19
>PF06470 SMC_hinge: SMC proteins Flexible Hinge Domain; InterPro: IPR010935 This entry represents the hinge region of the SMC (Structural Maintenance of Chromosomes) family of proteins. The hinge region is responsible for formation of the DNA interacting dimer. It is also possible that the precise structure of it is an essential determinant of the specificity of the DNA-protein interaction [].; GO: 0005515 protein binding, 0005524 ATP binding, 0051276 chromosome organization, 0005694 chromosome; PDB: 2WD5_A 1GXL_C 1GXK_A 1GXJ_A 3NWC_B 3L51_A.
Probab=43.80 E-value=1.5e+02 Score=27.58 Aligned_cols=83 Identities=16% Similarity=0.122 Sum_probs=52.6
Q ss_pred cccccccCCHHHHHHHHHhhc---ccccceeeecccccCCCCCCCC-----CCCceeeeccceeeeccchhhhHHHHhhh
Q 001812 704 SVEPYSLLTKEEIIRRIKSIY---QSAASVICCSTKEFLCSKPRSN-----FMEDVVGPVALIGTVCTNKLSRTLAEYLG 775 (1010)
Q Consensus 704 ~l~~~~~st~Eev~k~I~~~e---nsAA~i~c~l~~r~~~~~~~S~-----~l~GIiGvVAeLg~V~d~~lsa~LseyLG 775 (1010)
.+....-.+.+...+.|.... ..-+.++...+.+.. +... ...+-.+...++++++++.+..++...||
T Consensus 29 ~l~~iVV~~~~~a~~~i~~l~~~~~gr~~~i~l~~~~~~---~~~~~~~~~~~~~~~~~l~d~i~~~d~~~~~~~~~llg 105 (120)
T PF06470_consen 29 RLQAIVVEDEETAKKIIEFLKENKLGRATFIPLDKIRSR---SSASSADQIRPPGGAGPLIDLIEFPDEEYRPALEFLLG 105 (120)
T ss_dssp GGGSEEESSHHHHHHHHHHHHHTTSCEEEEEETTTTGGG---TTSCCCGGHHSTTSEEEGGGGEEESCGGGHHHHHHHHT
T ss_pred hhceEEECcHHHHHHHHHHHhhccCCeEEEEECcccccc---ccccchhhccCCcchHHHHHhcccCcHHHHHHHHHHcC
Confidence 333333467766666655542 334455544343332 1111 13578889999999977788877777777
Q ss_pred hhhhceeEecchHHHHHH
Q 001812 776 EHQMLALVCRSFEAAFAL 793 (1010)
Q Consensus 776 ietmL~IVv~s~e~ak~l 793 (1010)
- .+||+|-+.|+++
T Consensus 106 ~----~~vv~~l~~A~~l 119 (120)
T PF06470_consen 106 D----VVVVDDLEEARKL 119 (120)
T ss_dssp T----EEEESSHHHHHHH
T ss_pred C----EEEECCHHHHHHh
Confidence 4 6899999998875
No 20
>PRK14155 heat shock protein GrpE; Provisional
Probab=42.57 E-value=66 Score=34.89 Aligned_cols=49 Identities=12% Similarity=0.152 Sum_probs=40.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 001812 954 TQSIEALKQIEEKKLELDGIMQLIQESNKALEKDLEKLKNSEDKFNSFM 1002 (1010)
Q Consensus 954 ~~~~~l~~ql~~l~~e~~~l~e~i~~~~~~l~~~~~~~~kk~~~~~~~~ 1002 (1010)
.+..++..++++++.++..+.++..|.++..+..++..+|.+++..+|-
T Consensus 13 ~~~~~l~~~l~~le~e~~elkd~~lR~~AefeN~RKR~~kE~e~~~~~a 61 (208)
T PRK14155 13 FEADDAAQEIEALKAEVAALKDQALRYAAEAENTKRRAEREMNDARAYA 61 (208)
T ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456788888888888888889999999999988888888888777763
No 21
>PRK14163 heat shock protein GrpE; Provisional
Probab=41.39 E-value=99 Score=33.85 Aligned_cols=49 Identities=6% Similarity=0.087 Sum_probs=41.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 001812 953 STQSIEALKQIEEKKLELDGIMQLIQESNKALEKDLEKLKNSEDKFNSF 1001 (1010)
Q Consensus 953 ~~~~~~l~~ql~~l~~e~~~l~e~i~~~~~~l~~~~~~~~kk~~~~~~~ 1001 (1010)
.....+++.++.+++.++..+.+.+.|.+...+..++..+|-+++..+|
T Consensus 39 ~~~~~~l~~~l~~l~~e~~el~d~~lR~~AEfeN~rkR~~kE~e~~~~~ 87 (214)
T PRK14163 39 AAATAGLTAQLDQVRTALGERTADLQRLQAEYQNYRRRVERDRVTVKEI 87 (214)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456788889999999999999999999999998888888888777665
No 22
>PF13382 Adenine_deam_C: Adenine deaminase C-terminal domain; PDB: 3T8L_B 3T81_A 3NQB_A.
Probab=41.06 E-value=23 Score=37.05 Aligned_cols=75 Identities=27% Similarity=0.328 Sum_probs=42.8
Q ss_pred CCCchHhHHHHhhcc-----eEEEechhcHHHHH-Hhhc-Cc--eEEccCceeecCceEEeccCCCceeeccccccCchH
Q 001812 885 GNGLRETLLYRLFGK-----LQVYKTRKDMIEAH-TCIR-HG--AVSLDGGILKEDGIISLGCGNPTICFPIVRTRISTQ 955 (1010)
Q Consensus 885 g~GLRetLF~~LFG~-----tlVfeT~edM~~A~-~~i~-~g--iVTLDGeIIe~sGamTGGs~~~~v~F~~~~~~~~~~ 955 (1010)
|+|++.-.+.+=++. ++|..+.++|..|. .+++ .| +|.-||+++.. +..|....--...
T Consensus 49 Gfg~~~GAiAsS~ahDshniiviG~~~~dm~~A~n~l~~~gGG~vvv~~g~v~a~------------lpLpi~GlmS~~~ 116 (171)
T PF13382_consen 49 GFGLKRGAIASSVAHDSHNIIVIGTNDEDMALAANRLIEMGGGIVVVDDGEVLAE------------LPLPIAGLMSDLP 116 (171)
T ss_dssp SS--BSSEEEES--TTT--EEEEESSHHHHHHHHHHHHHTTSEEEEEETTEEEEE------------EE-TBTTTBBSS-
T ss_pred CCcccCCeEEEEcccCCCCEEEEECCHHHHHHHHHHHHHhCCCEEEEECCEEEEE------------EeccccceecCCC
Confidence 566665555555554 67788899999998 4444 23 55667776543 5555554211234
Q ss_pred HHHHHHHHHHHHHHHH
Q 001812 956 SIEALKQIEEKKLELD 971 (1010)
Q Consensus 956 ~~~l~~ql~~l~~e~~ 971 (1010)
.+++.+++++++....
T Consensus 117 ~eev~~~~~~l~~~~~ 132 (171)
T PF13382_consen 117 AEEVARQLEELEEALR 132 (171)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6677777777665543
No 23
>PRK14151 heat shock protein GrpE; Provisional
Probab=40.96 E-value=91 Score=32.98 Aligned_cols=52 Identities=10% Similarity=0.104 Sum_probs=42.4
Q ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 001812 951 RISTQSIEALKQIEEKKLELDGIMQLIQESNKALEKDLEKLKNSEDKFNSFM 1002 (1010)
Q Consensus 951 ~~~~~~~~l~~ql~~l~~e~~~l~e~i~~~~~~l~~~~~~~~kk~~~~~~~~ 1002 (1010)
.+......+++++++++.++..+.+++.|.++..+..++..+|-.++..+|.
T Consensus 17 ~~~~~~~~l~~~i~~le~e~~el~d~~lR~~Ae~eN~rkR~~kE~e~~~~~a 68 (176)
T PRK14151 17 AEAAAGDDLTARVQELEEQLAAAKDQSLRAAADLQNVRRRAEQDVEKAHKFA 68 (176)
T ss_pred ccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445677888888888889999999999999999988888888887777764
No 24
>PRK14158 heat shock protein GrpE; Provisional
Probab=39.51 E-value=1.1e+02 Score=33.06 Aligned_cols=50 Identities=10% Similarity=0.124 Sum_probs=42.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 001812 953 STQSIEALKQIEEKKLELDGIMQLIQESNKALEKDLEKLKNSEDKFNSFM 1002 (1010)
Q Consensus 953 ~~~~~~l~~ql~~l~~e~~~l~e~i~~~~~~l~~~~~~~~kk~~~~~~~~ 1002 (1010)
..++..+++++++++.++..+.++..|.++..+..++..+|-+++..+|-
T Consensus 39 ~~~~~~le~~l~~le~e~~el~d~~lR~~AefeN~RkR~~kE~e~~~~~a 88 (194)
T PRK14158 39 ADRIKELEEALAAKEAEAAANWDKYLRERADLENYRKRVQKEKEELLKYG 88 (194)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35678889999999999999999999999999988888888888777663
No 25
>PRK14139 heat shock protein GrpE; Provisional
Probab=39.23 E-value=1e+02 Score=32.91 Aligned_cols=49 Identities=8% Similarity=0.081 Sum_probs=41.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 001812 954 TQSIEALKQIEEKKLELDGIMQLIQESNKALEKDLEKLKNSEDKFNSFM 1002 (1010)
Q Consensus 954 ~~~~~l~~ql~~l~~e~~~l~e~i~~~~~~l~~~~~~~~kk~~~~~~~~ 1002 (1010)
+++..++.++++++.++..+.++..|.+...+..++..+|-+++..+|-
T Consensus 32 ~e~~~l~~~l~~le~e~~elkd~~lR~~AefeN~rKR~~kE~e~~~~~a 80 (185)
T PRK14139 32 DAAPALEAELAEAEAKAAELQDSFLRAKAETENVRRRAQEDVAKAHKFA 80 (185)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577888889999999999999999999999988888888887777664
No 26
>PRK14154 heat shock protein GrpE; Provisional
Probab=38.33 E-value=96 Score=33.80 Aligned_cols=46 Identities=7% Similarity=0.107 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 001812 956 SIEALKQIEEKKLELDGIMQLIQESNKALEKDLEKLKNSEDKFNSF 1001 (1010)
Q Consensus 956 ~~~l~~ql~~l~~e~~~l~e~i~~~~~~l~~~~~~~~kk~~~~~~~ 1001 (1010)
+..++.++++++.++..+.++..|.++..+..++..+|.+++..+|
T Consensus 54 ~~~l~~el~~le~e~~elkd~~lRl~ADfeNyRKR~~kE~e~~~~~ 99 (208)
T PRK14154 54 REKLEGQLTRMERKVDEYKTQYLRAQAEMDNLRKRIEREKADIIKF 99 (208)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556667777777777777777777777777777777766666555
No 27
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=38.19 E-value=68 Score=37.11 Aligned_cols=97 Identities=14% Similarity=0.117 Sum_probs=60.2
Q ss_pred hHHhhhHHHHHHHHhhhhhhhhHHHHHHHHHHhHHHHHHHHHHHhhcccccccCCHHHHHHHHHhhcc---cccceeeec
Q 001812 658 PIMKIVNELESEVRNYGLCIGRHEKALKLLNDQKMEVEEVLSKLQVSVEPYSLLTKEEIIRRIKSIYQ---SAASVICCS 734 (1010)
Q Consensus 658 ~~~~~~~~lq~~l~~lG~kI~~~e~~Lk~Lksqk~~~~~~i~dLq~~l~~~~~st~Eev~k~I~~~en---sAA~i~c~l 734 (1010)
++.+.-++|||.=+.+-.|+.+..+.++...+...+-+..+.+|..+|.+..++...+-.+.|+++++ .|.+.+-..
T Consensus 8 eL~~efq~Lqethr~Y~qKleel~~lQ~~C~ssI~~QkkrLk~L~~sLk~~~~~~~~e~~~~i~~L~~~Ik~r~~~l~Dm 87 (330)
T PF07851_consen 8 ELQKEFQELQETHRSYKQKLEELSKLQDKCSSSISHQKKRLKELKKSLKRCKKSLSAEERELIEKLEEDIKERRCQLFDM 87 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHhhHHHH
Confidence 46677889999999999999999998888888877777778888887777654332233333333322 221222111
Q ss_pred ccccCCCCCCCCCCCceeeecc
Q 001812 735 TKEFLCSKPRSNFMEDVVGPVA 756 (1010)
Q Consensus 735 ~~r~~~~~~~S~~l~GIiGvVA 756 (1010)
...-| ++.+..++=++|.|-
T Consensus 88 Ea~LP--kkNGlyL~liLGnVN 107 (330)
T PF07851_consen 88 EAFLP--KKNGLYLRLILGNVN 107 (330)
T ss_pred HhhCC--CCCCcccceeccccc
Confidence 11112 334447777888653
No 28
>PRK14162 heat shock protein GrpE; Provisional
Probab=37.33 E-value=1.3e+02 Score=32.47 Aligned_cols=50 Identities=8% Similarity=0.101 Sum_probs=43.2
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 001812 952 ISTQSIEALKQIEEKKLELDGIMQLIQESNKALEKDLEKLKNSEDKFNSF 1001 (1010)
Q Consensus 952 ~~~~~~~l~~ql~~l~~e~~~l~e~i~~~~~~l~~~~~~~~kk~~~~~~~ 1001 (1010)
...++..++.++++++.+...+.+++.|.++..+..++..+|-.++..+|
T Consensus 37 ~~~e~~~l~~~l~~l~~e~~elkd~~lR~~AEfeN~rkR~~kE~e~~~~~ 86 (194)
T PRK14162 37 KQNPVEDLEKEIADLKAKNKDLEDKYLRSQAEIQNMQNRYAKERAQLIKY 86 (194)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35678888999999999999999999999999998888888888777766
No 29
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=36.52 E-value=1.4e+02 Score=33.79 Aligned_cols=56 Identities=16% Similarity=0.173 Sum_probs=42.1
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhh
Q 001812 952 ISTQSIEALKQIEEKKLELDGIMQLIQESNKALEKDLEKLKNSEDKFNSFMDLWQT 1007 (1010)
Q Consensus 952 ~~~~~~~l~~ql~~l~~e~~~l~e~i~~~~~~l~~~~~~~~kk~~~~~~~~~~~~~ 1007 (1010)
++.++..++.+|.+.+.+++....++.+.+..+.....+.+..+++=.++++.|+.
T Consensus 207 D~~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e 262 (325)
T PF08317_consen 207 DQEELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAE 262 (325)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677888888888888888888888888888877777777777776666666653
No 30
>TIGR03769 P_ac_wall_RPT actinobacterial surface-anchored protein domain. This model describes a repeat domain that one to three times in Actinobacterial proteins, some of which have LPXTG-type sortase recognition motifs for covalent attachment to the Gram-positive cell wall. Where it occurs with duplication in an LPXTG-anchored protein, it tends to be adjacent to the substrate-binding protein of the gene trio of an ABC transporter system, where that substrate-binding protein has a single copy of this same domain. This arrangement suggests a substrate-binding relay system, with the LPXTG protein acting as a substrate receptor.
Probab=36.15 E-value=20 Score=29.60 Aligned_cols=16 Identities=31% Similarity=0.698 Sum_probs=13.7
Q ss_pred hhhhcccEEEEEEecC
Q 001812 264 LFQNAGAYTFSFHLTE 279 (1010)
Q Consensus 264 lf~~aGtY~f~Fs~~g 279 (1010)
.|.++|+|.++|..++
T Consensus 8 ~FT~PG~Y~l~~~a~~ 23 (41)
T TIGR03769 8 VFTKPGTYTLTVQATA 23 (41)
T ss_pred eeCCCeEEEEEEEEEE
Confidence 5999999999998654
No 31
>PRK14148 heat shock protein GrpE; Provisional
Probab=35.86 E-value=1.3e+02 Score=32.47 Aligned_cols=49 Identities=14% Similarity=0.066 Sum_probs=41.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 001812 954 TQSIEALKQIEEKKLELDGIMQLIQESNKALEKDLEKLKNSEDKFNSFM 1002 (1010)
Q Consensus 954 ~~~~~l~~ql~~l~~e~~~l~e~i~~~~~~l~~~~~~~~kk~~~~~~~~ 1002 (1010)
.++..++.++++++.+...+.++..|.++..+..++..+|..++..+|-
T Consensus 40 ~e~~~l~~~l~~l~~e~~elkd~~lR~~Ae~eN~rKR~~rE~e~~~~~a 88 (195)
T PRK14148 40 EQLERAKDTIKELEDSCDQFKDEALRAKAEMENIRKRAERDVSNARKFG 88 (195)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577888889999999999999999999999988888888887777664
No 32
>PRK14140 heat shock protein GrpE; Provisional
Probab=35.42 E-value=1.4e+02 Score=32.19 Aligned_cols=50 Identities=12% Similarity=0.147 Sum_probs=40.3
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 001812 952 ISTQSIEALKQIEEKKLELDGIMQLIQESNKALEKDLEKLKNSEDKFNSF 1001 (1010)
Q Consensus 952 ~~~~~~~l~~ql~~l~~e~~~l~e~i~~~~~~l~~~~~~~~kk~~~~~~~ 1001 (1010)
....+.++..++++++.++..+.+++.|.++..+..++..+|..++..+|
T Consensus 35 ~~~~~~~l~~~i~~l~~ei~elkd~~lR~~Ae~eN~rkR~~rE~~~~~~~ 84 (191)
T PRK14140 35 EAELLDEEQAKIAELEAKLDELEERYLRLQADFENYKRRIQKENEAAEKY 84 (191)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567788888899999999999999999999988887777777666554
No 33
>PRK14143 heat shock protein GrpE; Provisional
Probab=35.14 E-value=1.4e+02 Score=33.10 Aligned_cols=50 Identities=8% Similarity=0.130 Sum_probs=41.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 001812 953 STQSIEALKQIEEKKLELDGIMQLIQESNKALEKDLEKLKNSEDKFNSFM 1002 (1010)
Q Consensus 953 ~~~~~~l~~ql~~l~~e~~~l~e~i~~~~~~l~~~~~~~~kk~~~~~~~~ 1002 (1010)
..++.+++.++++++.++..+..+..|.++..+..++..+|-+++..+|.
T Consensus 66 ~~~~~~l~~el~~l~~e~~elkd~~lR~~AdfeN~RKR~~kE~e~~~~~a 115 (238)
T PRK14143 66 AARLAQLEQELESLKQELEELNSQYMRIAADFDNFRKRTSREQEDLRLQL 115 (238)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34678888889999999999999999999999988888888777776653
No 34
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=33.27 E-value=1e+02 Score=31.41 Aligned_cols=50 Identities=22% Similarity=0.268 Sum_probs=33.0
Q ss_pred HHHHhhhhhhhhHHHHHHHHHHhHHHHHHHHHHHhhcccccccCCHHHHHHHHHhh
Q 001812 668 SEVRNYGLCIGRHEKALKLLNDQKMEVEEVLSKLQVSVEPYSLLTKEEIIRRIKSI 723 (1010)
Q Consensus 668 ~~l~~lG~kI~~~e~~Lk~Lksqk~~~~~~i~dLq~~l~~~~~st~Eev~k~I~~~ 723 (1010)
+++..|..+|.++.+++..|+.+...++.++..|...+ |-+++...|.++
T Consensus 72 eel~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~------t~~el~~~i~~l 121 (169)
T PF07106_consen 72 EELAELDAEIKELREELAELKKEVKSLEAELASLSSEP------TNEELREEIEEL 121 (169)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC------CHHHHHHHHHHH
Confidence 46777777777777777777777777776666665443 345566665554
No 35
>PRK14161 heat shock protein GrpE; Provisional
Probab=32.88 E-value=1.3e+02 Score=31.89 Aligned_cols=47 Identities=13% Similarity=0.262 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 001812 956 SIEALKQIEEKKLELDGIMQLIQESNKALEKDLEKLKNSEDKFNSFM 1002 (1010)
Q Consensus 956 ~~~l~~ql~~l~~e~~~l~e~i~~~~~~l~~~~~~~~kk~~~~~~~~ 1002 (1010)
++..+.++++++.+...+.+++.|.++..+..++..+|..++..+|-
T Consensus 21 ~~~~~~ei~~l~~e~~elkd~~lR~~AefeN~rkR~~ke~~~~~~~a 67 (178)
T PRK14161 21 VETANPEITALKAEIEELKDKLIRTTAEIDNTRKRLEKARDEAKDYA 67 (178)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556677777777777888888888888888888877777776653
No 36
>PRK14145 heat shock protein GrpE; Provisional
Probab=32.72 E-value=1.6e+02 Score=31.81 Aligned_cols=52 Identities=10% Similarity=0.207 Sum_probs=44.0
Q ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 001812 951 RISTQSIEALKQIEEKKLELDGIMQLIQESNKALEKDLEKLKNSEDKFNSFM 1002 (1010)
Q Consensus 951 ~~~~~~~~l~~ql~~l~~e~~~l~e~i~~~~~~l~~~~~~~~kk~~~~~~~~ 1002 (1010)
..+.++..++.++++++.++..+.....|..+..+..++..+|.+++..+|-
T Consensus 42 ~~~~e~~~l~~~l~~le~e~~el~d~~lR~~AEfeN~rkR~~kE~e~~~~~a 93 (196)
T PRK14145 42 QTVDEIEELKQKLQQKEVEAQEYLDIAQRLKAEFENYRKRTEKEKSEMVEYG 93 (196)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456788899999999999999999999999999988888888888777663
No 37
>PRK04325 hypothetical protein; Provisional
Probab=32.48 E-value=1.4e+02 Score=27.59 Aligned_cols=56 Identities=16% Similarity=0.279 Sum_probs=44.0
Q ss_pred hHHHHHHHHhhhhhhhhHHHHHHHHHHhHHHHHHHHHHHhhcccccccCCHHHHHHHHHhhccc
Q 001812 663 VNELESEVRNYGLCIGRHEKALKLLNDQKMEVEEVLSKLQVSVEPYSLLTKEEIIRRIKSIYQS 726 (1010)
Q Consensus 663 ~~~lq~~l~~lG~kI~~~e~~Lk~Lksqk~~~~~~i~dLq~~l~~~~~st~Eev~k~I~~~ens 726 (1010)
-..|++.|..|=.++...|+-|..|+....+-..+|.+|+..|. -+.+++++.+.+
T Consensus 4 ~~~~e~Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~--------~L~~rl~~~~~~ 59 (74)
T PRK04325 4 VQEMEDRITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLR--------LLYQQMRDANPD 59 (74)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHhccc
Confidence 34577788888889999999999999998888888988887774 555666666433
No 38
>KOG0518 consensus Actin-binding cytoskeleton protein, filamin [Cytoskeleton]
Probab=32.09 E-value=1.4e+03 Score=30.78 Aligned_cols=248 Identities=23% Similarity=0.277 Sum_probs=139.4
Q ss_pred CCeeEEeeeccCCccCCCC---CCc---eEEEec----Cc--eeeeeccccceeecCCCceeeEeeeee--ecccccccC
Q 001812 320 PPLSVACYDIYDNRIPFES---KPQ---FLVKIK----PS--KIIKVEDKLKWNLSPDKLTLNIQDILV--ASSKLDEIR 385 (1010)
Q Consensus 320 Pp~~Ia~~D~y~N~vpfs~---~P~---l~~k~~----~~--~~~~i~~~~~i~ls~d~~~l~i~d~~i--~~~~L~~i~ 385 (1010)
+|.-|.|+|..|-.--.+- +|- .+++.+ ++ |-..|.+-.++.=|+.+.. -+-++.| ...+|..
T Consensus 618 skaei~c~dn~Dgt~~vsy~P~vpG~y~i~V~~~~k~vpgSPF~~~Vt~~~s~r~s~~~Vg-s~~ev~in~~~~~~s~-- 694 (1113)
T KOG0518|consen 618 SKAEIRCYDNKDGTCSVSYTPTVPGVYKIEVKFGDKHVPGSPFVALVTGDESIRTSHLSVG-SIHEVTINITEADLSV-- 694 (1113)
T ss_pred CccceeEEeCCCCcEEeccCCCCCceEEEEEEECCeeCCCCCceEEEecccccccccceec-ceeeEEeeccccCCce--
Confidence 5778999998777644444 442 344443 22 4455544345555555421 1222222 1112221
Q ss_pred ccccceEEEeeCCCCceeeeee--EecCCCcceEEeecCcc----------cCCCCcchhhHHHHhhh-h-----hcccc
Q 001812 386 PDYRATLVISSKDKPVSVSIPC--RVTPGSLKNVAVHPQNL----------GILLPGSVIKMLKLEMF-D-----AFYNN 447 (1010)
Q Consensus 386 p~y~a~L~i~~~~~p~s~s~pc--~V~pG~p~~v~~~p~~~----------~~L~Pg~~~~~~vle~F-D-----~~~N~ 447 (1010)
|..+|.+=.-. --|| |-.||-.-.++|+|+-- ....||+=|..+|-|-= | .|+--
T Consensus 695 ------ltaeI~~PsGn-~~~c~~r~l~~g~~~itF~P~e~GeH~I~Vk~~G~hVpgsPf~i~V~~~e~dAsk~~v~g~g 767 (1113)
T KOG0518|consen 695 ------LTAEIVDPSGN-PEPCLVRRLPNGHDGITFTPREVGEHKINVKVAGKHVPGSPFSIKVSESEIDASKVRVSGQG 767 (1113)
T ss_pred ------eEEEEECCCCC-ccceeeEecCCCceeEEECCCcCcceEEEEEEcceECCCCCeEEEeccccccceeEEEeccc
Confidence 22222221111 2344 44677778888887752 77889998888876652 2 35666
Q ss_pred cccc---ce--------------EEEeecceeeeccccccccccCcccccC-ccceeeee------cCCcc---------
Q 001812 448 VKKG---LE--------------VELNVDGFCIEDQLGLRRKVDGYGCIDL-SGLLKVKA------GYGKN--------- 494 (1010)
Q Consensus 448 v~eG---~e--------------v~i~~~G~~~~d~~g~~~kv~~~gcidL-sg~lkvta------gyg~~--------- 494 (1010)
+++| .- +-|.+.|=. |||-+ |-|+ +|.-||+= -|-=|
T Consensus 768 ~~~G~t~ep~~fivDtr~agyGgLsi~~~Gps---------kvd~~-~~d~~dGt~kV~ytPtepG~Y~I~i~Fad~~I~ 837 (1113)
T KOG0518|consen 768 LKEGHTFEPAEFIVDTRKAGYGGLSISVQGPS---------KVDLN-VEDREDGTCKVSYTPTEPGTYIINIKFADEHIK 837 (1113)
T ss_pred ccccccccchheEeccccCCCCceEEEEeCCc---------ccccc-eeecCCCeEEEEEeCCCCceEEEEEEEcCccCC
Confidence 6777 11 222222322 33322 2222 36666642 12111
Q ss_pred -eeEEEecCCceeeecchhhHHHHHhhhcCCCcccc----cCCcccccEEEEEcCCCCcceeeccCCCCCc---------
Q 001812 495 -VSLSVLSDNGVIFKQDFQTEKRELRVISGVPECCT----VGSQLEDITFEIVDSKGAVDVTIHDDDKSGQ--------- 560 (1010)
Q Consensus 495 -~slsv~~~~~~if~~~~~~~~r~lr~~~~~p~~c~----~G~ql~~l~f~v~d~dG~vDt~ih~d~~~g~--------- 560 (1010)
--++|.--++.+-++..+-.+|.+++++.--.|.. ++..-.++..+++|..|-++-++=.|--.|.
T Consensus 838 gSPftVkv~~~~~vvesi~~~~~~~~va~~g~~~~l~lk~~~~~~~d~ta~vt~PSG~~~~aei~~~~~~~y~vrFtP~e 917 (1113)
T KOG0518|consen 838 GSPFTVKVTGESRVVESITRDREAPSVARVGHTCSLDLKATEASSQDITARVTDPSGRVFEAEIVDLGQGTYQVRFTPKE 917 (1113)
T ss_pred CCceEEEecCCeeEeeeeeecccccceecccceeeeeeecCCCCccceEEEeeCCCCCccccEEEECCCceEEEEecCCC
Confidence 11334444445667777888888888887555543 3444567899999999999887766555552
Q ss_pred --eeEEEEeecccccccceeeeeecceeccCC
Q 001812 561 --SHTLTIKSDVINTENSIRYAFRQGRCTVPA 590 (1010)
Q Consensus 561 --~h~lti~sds~~~~~~iry~f~~g~C~vp~ 590 (1010)
-||+.++|.-.-.++|= |-.|+|--+.
T Consensus 918 ~G~~tl~V~y~~~~vegsp---ftvgs~~e~~ 946 (1113)
T KOG0518|consen 918 PGNHTLSVKYKDQHVEGSP---FTVGSLGEGG 946 (1113)
T ss_pred CCceEEEEEecCccCCCCc---eeeecccccc
Confidence 48999999888888776 7777775443
No 39
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=32.06 E-value=1.3e+02 Score=27.14 Aligned_cols=37 Identities=11% Similarity=0.032 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001812 955 QSIEALKQIEEKKLELDGIMQLIQESNKALEKDLEKL 991 (1010)
Q Consensus 955 ~~~~l~~ql~~l~~e~~~l~e~i~~~~~~l~~~~~~~ 991 (1010)
.+.+|+++|..|+.|...++..+.+-+....-+.--|
T Consensus 22 Sv~EL~~RIa~L~aEI~R~~~~~~~K~a~r~AAealF 58 (59)
T PF06698_consen 22 SVEELEERIALLEAEIARLEAAIAKKSASRAAAEALF 58 (59)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3789999999999999999999988888777665555
No 40
>PRK14147 heat shock protein GrpE; Provisional
Probab=31.95 E-value=1.4e+02 Score=31.40 Aligned_cols=50 Identities=10% Similarity=0.140 Sum_probs=37.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 001812 953 STQSIEALKQIEEKKLELDGIMQLIQESNKALEKDLEKLKNSEDKFNSFM 1002 (1010)
Q Consensus 953 ~~~~~~l~~ql~~l~~e~~~l~e~i~~~~~~l~~~~~~~~kk~~~~~~~~ 1002 (1010)
+.+..+++.++++++.++..+.+...|.++..+..++...|-.++..+|-
T Consensus 17 ~~~~~~l~~~l~~l~~e~~elkd~~lR~~Ad~eN~rkR~~kE~e~~~~~a 66 (172)
T PRK14147 17 PPETDPLKAEVESLRSEIALVKADALRERADLENQRKRIARDVEQARKFA 66 (172)
T ss_pred CccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555677788888888888888888888888877777777777666553
No 41
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=31.67 E-value=97 Score=29.48 Aligned_cols=41 Identities=24% Similarity=0.300 Sum_probs=24.5
Q ss_pred hhHHHHHHHHhhhhhhhhHHHHHHHHHHhHHHHHHHHHHHh
Q 001812 662 IVNELESEVRNYGLCIGRHEKALKLLNDQKMEVEEVLSKLQ 702 (1010)
Q Consensus 662 ~~~~lq~~l~~lG~kI~~~e~~Lk~Lksqk~~~~~~i~dLq 702 (1010)
-...+.+.+..+...|+.++++++.+..+..+++..|..+|
T Consensus 64 a~~~Le~~~e~le~~i~~l~~~~~~l~~~~~elk~~l~~~~ 104 (105)
T cd00632 64 ARTELKERLETIELRIKRLERQEEDLQEKLKELQEKIQQAQ 104 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455556566666666666666666666666666555554
No 42
>PF13600 DUF4140: N-terminal domain of unknown function (DUF4140)
Probab=31.39 E-value=1.3e+02 Score=28.20 Aligned_cols=34 Identities=21% Similarity=0.153 Sum_probs=28.2
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001812 952 ISTQSIEALKQIEEKKLELDGIMQLIQESNKALE 985 (1010)
Q Consensus 952 ~~~~~~~l~~ql~~l~~e~~~l~e~i~~~~~~l~ 985 (1010)
.++++.+++++++++++++..+..+++..+..+.
T Consensus 68 ~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~ 101 (104)
T PF13600_consen 68 DSPELKELEEELEALEDELAALQDEIQALEAQIA 101 (104)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678889999999999998888888888777664
No 43
>PRK02119 hypothetical protein; Provisional
Probab=29.99 E-value=1.7e+02 Score=26.97 Aligned_cols=55 Identities=25% Similarity=0.383 Sum_probs=44.1
Q ss_pred hhHHHHHHHHhhhhhhhhHHHHHHHHHHhHHHHHHHHHHHhhcccccccCCHHHHHHHHHhhc
Q 001812 662 IVNELESEVRNYGLCIGRHEKALKLLNDQKMEVEEVLSKLQVSVEPYSLLTKEEIIRRIKSIY 724 (1010)
Q Consensus 662 ~~~~lq~~l~~lG~kI~~~e~~Lk~Lksqk~~~~~~i~dLq~~l~~~~~st~Eev~k~I~~~e 724 (1010)
....+++.|..|=.++...|+.|..|+....+-..+|.+|+..|. -+.+++++..
T Consensus 3 ~~~~~e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~--------~L~~rl~~~~ 57 (73)
T PRK02119 3 IQQNLENRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLR--------YMANKLKDMQ 57 (73)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHhhc
Confidence 345578888888899999999999999998888888999987775 5555666654
No 44
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=29.52 E-value=2.3e+02 Score=27.07 Aligned_cols=64 Identities=8% Similarity=0.112 Sum_probs=39.1
Q ss_pred cCceEEeccCC--Cceeeccc-----cccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001812 930 EDGIISLGCGN--PTICFPIV-----RTRISTQSIEALKQIEEKKLELDGIMQLIQESNKALEKDLEKLKN 993 (1010)
Q Consensus 930 ~sGamTGGs~~--~~v~F~~~-----~~~~~~~~~~l~~ql~~l~~e~~~l~e~i~~~~~~l~~~~~~~~k 993 (1010)
++|++..|... ..+....+ +....+-..-++++++.++.+..++.+.++..+..+......+..
T Consensus 56 g~~~~~~~~i~~~~~v~v~iG~~~~ve~~~~eA~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~l~~~l~~ 126 (129)
T cd00890 56 GAGLFVKAEVKDDDKVLVDLGTGVYVEKSLEEAIEFLKKRLETLEKQIEKLEKQLEKLQDQITELQEELQQ 126 (129)
T ss_pred CCceEEEEEECCCCEEEEEecCCEEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666553 22222222 233334566677777778878778887777777777766665543
No 45
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=29.07 E-value=2.8e+02 Score=27.79 Aligned_cols=48 Identities=21% Similarity=0.210 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 001812 955 QSIEALKQIEEKKLELDGIMQLIQESNKALEKDLEKLKNSEDKFNSFM 1002 (1010)
Q Consensus 955 ~~~~l~~ql~~l~~e~~~l~e~i~~~~~~l~~~~~~~~kk~~~~~~~~ 1002 (1010)
.+..+++++++++.+......+.+.++..+..+..+.+.-++++.+.-
T Consensus 74 ~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~~klk 121 (151)
T PF11559_consen 74 DVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKEELQKLK 121 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666666666666666666666555555555555555443
No 46
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=28.50 E-value=1.8e+02 Score=32.12 Aligned_cols=50 Identities=10% Similarity=0.241 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 001812 955 QSIEALKQIEEKKLELDGIMQLIQESNKALEKDLEKLKNSEDKFNSFMDL 1004 (1010)
Q Consensus 955 ~~~~l~~ql~~l~~e~~~l~e~i~~~~~~l~~~~~~~~kk~~~~~~~~~~ 1004 (1010)
+...+.+.++.++.|.++...+++.++..-+..++..+....+|-+.++.
T Consensus 152 ~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee 201 (216)
T KOG1962|consen 152 ENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEE 201 (216)
T ss_pred hHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHH
Confidence 35566677777777777777777777777777778888888888777743
No 47
>PRK00736 hypothetical protein; Provisional
Probab=28.31 E-value=1.9e+02 Score=26.26 Aligned_cols=51 Identities=18% Similarity=0.307 Sum_probs=39.5
Q ss_pred HHHHHHhhhhhhhhHHHHHHHHHHhHHHHHHHHHHHhhcccccccCCHHHHHHHHHhhc
Q 001812 666 LESEVRNYGLCIGRHEKALKLLNDQKMEVEEVLSKLQVSVEPYSLLTKEEIIRRIKSIY 724 (1010)
Q Consensus 666 lq~~l~~lG~kI~~~e~~Lk~Lksqk~~~~~~i~dLq~~l~~~~~st~Eev~k~I~~~e 724 (1010)
+++.|..|=.++...|+.|+.|+....+-..+|..|+..|. -+.+++++.+
T Consensus 3 ~e~Ri~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~--------~L~~rl~~~~ 53 (68)
T PRK00736 3 AEERLTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLD--------ALTERFLSLE 53 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHhc
Confidence 45567777788899999999999998888888888887774 5555666654
No 48
>PF07028 DUF1319: Protein of unknown function (DUF1319); InterPro: IPR010746 This entry is represented by Commelina yellow mottle virus, Orf1. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family contains a number of viral proteins of unknown function approximately 200 residues long. Family members seem to be restricted to badnaviruses.
Probab=28.30 E-value=2.1e+02 Score=29.31 Aligned_cols=59 Identities=20% Similarity=0.182 Sum_probs=42.8
Q ss_pred HHHHHHHHhhhhhhhhHHHHHHHHHHhHHHHHHHHHHHhhcccccccCCHHHHHHHHHh
Q 001812 664 NELESEVRNYGLCIGRHEKALKLLNDQKMEVEEVLSKLQVSVEPYSLLTKEEIIRRIKS 722 (1010)
Q Consensus 664 ~~lq~~l~~lG~kI~~~e~~Lk~Lksqk~~~~~~i~dLq~~l~~~~~st~Eev~k~I~~ 722 (1010)
++..+.|+.+-.=.+.-+.+|+.++++...+.+++..|+.....-.|-|+++|.+...+
T Consensus 42 ~~~~~~lk~~~ki~~~Qr~~l~~l~~~l~~l~~eL~~Lr~~~l~rRPLtk~dVeeLV~~ 100 (126)
T PF07028_consen 42 KKLLEELKNLSKIQESQRSELKELKQELDVLSKELQALRKEYLERRPLTKEDVEELVLR 100 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 55556666655545566777888888888888888888877766667888888877443
No 49
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=28.12 E-value=2.4e+02 Score=29.18 Aligned_cols=53 Identities=13% Similarity=0.185 Sum_probs=40.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHh
Q 001812 954 TQSIEALKQIEEKKLELDGIMQ---LIQESNKALEKDLEKLKNSEDKFNSFMDLWQ 1006 (1010)
Q Consensus 954 ~~~~~l~~ql~~l~~e~~~l~e---~i~~~~~~l~~~~~~~~kk~~~~~~~~~~~~ 1006 (1010)
.++..++.||++.+..+..+.. +..+++..+.....++++.+++|..=++..+
T Consensus 27 ~e~~~~k~ql~~~d~~i~~Lk~~~~d~eeLk~~i~~lq~~~~~~~~~~e~~l~~~~ 82 (155)
T PF06810_consen 27 EERDNLKTQLKEADKQIKDLKKSAKDNEELKKQIEELQAKNKTAKEEYEAKLAQMK 82 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567777788887777777777 7778888888888888888888877666543
No 50
>PRK00295 hypothetical protein; Provisional
Probab=27.86 E-value=1.9e+02 Score=26.18 Aligned_cols=51 Identities=24% Similarity=0.393 Sum_probs=40.8
Q ss_pred HHHHHHhhhhhhhhHHHHHHHHHHhHHHHHHHHHHHhhcccccccCCHHHHHHHHHhhc
Q 001812 666 LESEVRNYGLCIGRHEKALKLLNDQKMEVEEVLSKLQVSVEPYSLLTKEEIIRRIKSIY 724 (1010)
Q Consensus 666 lq~~l~~lG~kI~~~e~~Lk~Lksqk~~~~~~i~dLq~~l~~~~~st~Eev~k~I~~~e 724 (1010)
+++.|..|=.++...|+.|..|+....+-..+|..|+..|. .+.+++++.+
T Consensus 3 ~e~Ri~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~--------~L~~rl~~~~ 53 (68)
T PRK00295 3 LEERVTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMA--------ALIKRQEEMV 53 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHhh
Confidence 55667777888899999999999998888888988887775 5566666665
No 51
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=27.01 E-value=2.4e+02 Score=31.20 Aligned_cols=50 Identities=10% Similarity=0.296 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhh
Q 001812 958 EALKQIEEKKLELDGIMQLIQESNKALEKDLEKLKNSEDKFNSFMDLWQT 1007 (1010)
Q Consensus 958 ~l~~ql~~l~~e~~~l~e~i~~~~~~l~~~~~~~~kk~~~~~~~~~~~~~ 1007 (1010)
+..++|...+..++.++..|+..+....+.++.-.++-++|..+.+.|..
T Consensus 50 ~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~ 99 (230)
T PF10146_consen 50 AHVEELRQINQDINTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEINE 99 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444445555555555556677777778888888887754
No 52
>PRK14141 heat shock protein GrpE; Provisional
Probab=27.01 E-value=1.6e+02 Score=32.06 Aligned_cols=45 Identities=9% Similarity=0.051 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 001812 957 IEALKQIEEKKLELDGIMQLIQESNKALEKDLEKLKNSEDKFNSF 1001 (1010)
Q Consensus 957 ~~l~~ql~~l~~e~~~l~e~i~~~~~~l~~~~~~~~kk~~~~~~~ 1001 (1010)
..++.+|+.++.++..+.+.+.|.++..+..++..+|..++..+|
T Consensus 34 ~~~~~~i~~le~e~~elkd~~lR~~Ae~eN~RKR~~kE~e~~~~~ 78 (209)
T PRK14141 34 DPEPDPLEALKAENAELKDRMLRLAAEMENLRKRTQRDVADARAY 78 (209)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346666777777777777778888888887777777777776665
No 53
>PRK11637 AmiB activator; Provisional
Probab=26.92 E-value=2.4e+02 Score=32.92 Aligned_cols=26 Identities=19% Similarity=0.193 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHH
Q 001812 973 IMQLIQESNKALEKDLEKLKNSEDKF 998 (1010)
Q Consensus 973 l~e~i~~~~~~l~~~~~~~~kk~~~~ 998 (1010)
+..+|.+.+..+......++..++.+
T Consensus 101 ~~~ei~~l~~eI~~~q~~l~~~~~~l 126 (428)
T PRK11637 101 LNKQIDELNASIAKLEQQQAAQERLL 126 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333
No 54
>PRK02793 phi X174 lysis protein; Provisional
Probab=26.42 E-value=2.2e+02 Score=26.08 Aligned_cols=54 Identities=19% Similarity=0.193 Sum_probs=44.0
Q ss_pred HHHHHHHhhhhhhhhHHHHHHHHHHhHHHHHHHHHHHhhcccccccCCHHHHHHHHHhhccc
Q 001812 665 ELESEVRNYGLCIGRHEKALKLLNDQKMEVEEVLSKLQVSVEPYSLLTKEEIIRRIKSIYQS 726 (1010)
Q Consensus 665 ~lq~~l~~lG~kI~~~e~~Lk~Lksqk~~~~~~i~dLq~~l~~~~~st~Eev~k~I~~~ens 726 (1010)
.+++.|..|=.++...|+.|..|+....+-..+|..|+..|. -+.+++.+.+.+
T Consensus 5 ~~e~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~--------~L~~rl~~~~~~ 58 (72)
T PRK02793 5 SLEARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLR--------LLTEKLKASQPS 58 (72)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHhhccc
Confidence 477788888889999999999999998888889999998775 566667776544
No 55
>PRK14153 heat shock protein GrpE; Provisional
Probab=26.25 E-value=1.5e+02 Score=31.99 Aligned_cols=48 Identities=8% Similarity=0.140 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 001812 955 QSIEALKQIEEKKLELDGIMQLIQESNKALEKDLEKLKNSEDKFNSFM 1002 (1010)
Q Consensus 955 ~~~~l~~ql~~l~~e~~~l~e~i~~~~~~l~~~~~~~~kk~~~~~~~~ 1002 (1010)
+...+..++++++.+...+.+++.|.++..+..++..+|.+++..+|-
T Consensus 34 ~~~~~~~ei~~l~~e~~elkd~~lR~~AEfeN~rKR~~kE~e~~~~~a 81 (194)
T PRK14153 34 EDSTADSETEKCREEIESLKEQLFRLAAEFDNFRKRTAREMEENRKFV 81 (194)
T ss_pred hcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355566667777777777777778888888877777777777776653
No 56
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=26.20 E-value=2.9e+02 Score=29.69 Aligned_cols=46 Identities=15% Similarity=0.268 Sum_probs=28.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 001812 954 TQSIEALKQIEEKKLELDGIMQLIQESNKALEKDLEKLKNSEDKFN 999 (1010)
Q Consensus 954 ~~~~~l~~ql~~l~~e~~~l~e~i~~~~~~l~~~~~~~~kk~~~~~ 999 (1010)
.++.+++.+++.++.+++.+.+.++..+..+++.+.....++....
T Consensus 63 ~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~~l~ 108 (302)
T PF10186_consen 63 REIEELRERLERLRERIERLRKRIEQKRERLEELRESLEQRRSRLS 108 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666666666666666666666666666666655554443
No 57
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=26.14 E-value=4.1e+02 Score=23.94 Aligned_cols=44 Identities=5% Similarity=0.108 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 001812 955 QSIEALKQIEEKKLELDGIMQLIQESNKALEKDLEKLKNSEDKF 998 (1010)
Q Consensus 955 ~~~~l~~ql~~l~~e~~~l~e~i~~~~~~l~~~~~~~~kk~~~~ 998 (1010)
++.+|..++..|+.+...|..+++.++..+..++..-.+.+++.
T Consensus 4 kid~Ls~dVq~L~~kvdqLs~dv~~lr~~v~~ak~EAaRAN~Rl 47 (56)
T PF04728_consen 4 KIDQLSSDVQTLNSKVDQLSSDVNALRADVQAAKEEAARANQRL 47 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677777777777777777777777777776666666665553
No 58
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=25.90 E-value=1.7e+02 Score=31.54 Aligned_cols=50 Identities=20% Similarity=0.213 Sum_probs=33.3
Q ss_pred HHHHhhhhhhhhHHHHHHHHHHhHHHHHHHHHHHhhcccccccCCHHHHHHHHHhh
Q 001812 668 SEVRNYGLCIGRHEKALKLLNDQKMEVEEVLSKLQVSVEPYSLLTKEEIIRRIKSI 723 (1010)
Q Consensus 668 ~~l~~lG~kI~~~e~~Lk~Lksqk~~~~~~i~dLq~~l~~~~~st~Eev~k~I~~~ 723 (1010)
++|+.|..+|..+++.+..|+++-.-++.+|..|+-.| |-|++++.|.++
T Consensus 79 eel~~ld~~i~~l~ek~q~l~~t~s~veaEik~L~s~L------t~eemQe~i~~L 128 (201)
T KOG4603|consen 79 EELQVLDGKIVALTEKVQSLQQTCSYVEAEIKELSSAL------TTEEMQEEIQEL 128 (201)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc------ChHHHHHHHHHH
Confidence 35677777777777777777777777777777777555 345555555554
No 59
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=25.81 E-value=3.4e+02 Score=26.05 Aligned_cols=52 Identities=17% Similarity=0.292 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHh
Q 001812 955 QSIEALKQIEEKKLELDGIMQLIQESNKALEKDLEKLKNSEDKFNSFMDLWQ 1006 (1010)
Q Consensus 955 ~~~~l~~ql~~l~~e~~~l~e~i~~~~~~l~~~~~~~~kk~~~~~~~~~~~~ 1006 (1010)
++..+...|...+.+.+..++.+...+..|......++....+|.+|+..-+
T Consensus 8 e~~~~~~~l~~kr~e~~~~~~~~~~~e~~L~~~e~~l~~~~~~f~~flken~ 59 (126)
T PF13863_consen 8 EMFLVQLALDTKREEIERREEQLKQREEELEKKEQELEEDVIKFDKFLKENE 59 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 4566777788888888888888888899999999999998999999987543
No 60
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=25.61 E-value=1.2e+02 Score=32.34 Aligned_cols=62 Identities=26% Similarity=0.277 Sum_probs=0.0
Q ss_pred HHHHHHHHhhhhhhhhHHHHHHHHHHhHHHHHHHHHHHhhcccccccCCHHHHHHHHHhhcccccc
Q 001812 664 NELESEVRNYGLCIGRHEKALKLLNDQKMEVEEVLSKLQVSVEPYSLLTKEEIIRRIKSIYQSAAS 729 (1010)
Q Consensus 664 ~~lq~~l~~lG~kI~~~e~~Lk~Lksqk~~~~~~i~dLq~~l~~~~~st~Eev~k~I~~~ensAA~ 729 (1010)
.++++.+..|-.+|-+++.....++.+++..+.+|..|++.. ....+++...=.+-.++||+
T Consensus 127 ~~~e~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lks~~----~~l~~~~~~~e~~F~~~~aa 188 (190)
T PF05266_consen 127 KELESEIKELEMKILELQRQAAKLKEKKEAKDKEISRLKSEA----EALKEEIENAELEFQSVAAA 188 (190)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhcC
No 61
>PRK14160 heat shock protein GrpE; Provisional
Probab=24.97 E-value=2.6e+02 Score=30.70 Aligned_cols=47 Identities=6% Similarity=0.070 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 001812 955 QSIEALKQIEEKKLELDGIMQLIQESNKALEKDLEKLKNSEDKFNSF 1001 (1010)
Q Consensus 955 ~~~~l~~ql~~l~~e~~~l~e~i~~~~~~l~~~~~~~~kk~~~~~~~ 1001 (1010)
++..++.+++.++.++..+...+.|.++..+..++.+.|-++...+|
T Consensus 62 e~~~l~~~l~~l~~e~~elkd~~lR~~AefeN~RKR~~kE~e~~~~~ 108 (211)
T PRK14160 62 ENNKLKEENKKLENELEALKDRLLRTVAEYDNYRKRTAKEKEGIYSD 108 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555566666666666666666666655555444
No 62
>PRK14157 heat shock protein GrpE; Provisional
Probab=24.96 E-value=2e+02 Score=31.88 Aligned_cols=44 Identities=14% Similarity=0.289 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 001812 958 EALKQIEEKKLELDGIMQLIQESNKALEKDLEKLKNSEDKFNSF 1001 (1010)
Q Consensus 958 ~l~~ql~~l~~e~~~l~e~i~~~~~~l~~~~~~~~kk~~~~~~~ 1001 (1010)
.++.++++++.++..+.+++.|.+...+..++..+|-+++..+|
T Consensus 81 ~~~~~l~~le~e~~e~kd~llR~~AEfeNyRKR~~rE~e~~~~~ 124 (227)
T PRK14157 81 DTLTPLGQAKKEAAEYLEALQRERAEFINYRNRTQKEQDRFRQH 124 (227)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46667777777777778888888888888887777777777665
No 63
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=24.84 E-value=2.4e+02 Score=37.27 Aligned_cols=45 Identities=18% Similarity=0.135 Sum_probs=34.5
Q ss_pred CCceeeeccceeeeccchhhhHHHHhhhhhhhceeEecchHHHHHHHHhh
Q 001812 748 MEDVVGPVALIGTVCTNKLSRTLAEYLGEHQMLALVCRSFEAAFALEKYE 797 (1010)
Q Consensus 748 l~GIiGvVAeLg~V~d~~lsa~LseyLGietmL~IVv~s~e~ak~le~yl 797 (1010)
.+|.+|...+|++.|+.|.. ++.-.||- -+||+|-+.|+.+....
T Consensus 588 ~~g~~~~a~dli~~d~~~~~-~~~~~l~~----t~Iv~~l~~A~~l~~~~ 632 (1163)
T COG1196 588 APGFLGLASDLIDFDPKYEP-AVRFVLGD----TLVVDDLEQARRLARKL 632 (1163)
T ss_pred ccchhHHHHHHhcCCHHHHH-HHHHHhCC----eEEecCHHHHHHHHHhc
Confidence 78999999999999775554 45555543 68999999998876554
No 64
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=24.71 E-value=2.3e+02 Score=25.41 Aligned_cols=38 Identities=16% Similarity=0.162 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001812 956 SIEALKQIEEKKLELDGIMQLIQESNKALEKDLEKLKN 993 (1010)
Q Consensus 956 ~~~l~~ql~~l~~e~~~l~e~i~~~~~~l~~~~~~~~k 993 (1010)
+.+++.++..++...+.++.++..+...+++..++.++
T Consensus 2 i~elEn~~~~~~~~i~tvk~en~~i~~~ve~i~envk~ 39 (55)
T PF05377_consen 2 IDELENELPRIESSINTVKKENEEISESVEKIEENVKD 39 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666666666666666666655555543
No 65
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.71 E-value=3e+02 Score=31.30 Aligned_cols=51 Identities=18% Similarity=0.158 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 001812 955 QSIEALKQIEEKKLELDGIMQLIQESNKALEKDLEKLKNSEDKFNSFMDLW 1005 (1010)
Q Consensus 955 ~~~~l~~ql~~l~~e~~~l~e~i~~~~~~l~~~~~~~~kk~~~~~~~~~~~ 1005 (1010)
.+.++..++.+++.+...+.++|++.+..+.....+.+..++.|.+=+.-+
T Consensus 60 qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~~~l~~raRAm 110 (265)
T COG3883 60 QIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQELLKKRARAM 110 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444445555555555555555555555555555555555544433
No 66
>PF10158 LOH1CR12: Tumour suppressor protein; InterPro: IPR018780 This entry represents a region of 130 amino acids that is the most conserved part of some hypothetical proteins involved in loss of heterozygosity, and thus, tumour suppression []. The exact function of these proteins is not known.
Probab=24.68 E-value=2.4e+02 Score=28.75 Aligned_cols=42 Identities=14% Similarity=0.383 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhh
Q 001812 966 KKLELDGIMQLIQESNKALEKDLEKLKNSEDKFNSFMDLWQT 1007 (1010)
Q Consensus 966 l~~e~~~l~e~i~~~~~~l~~~~~~~~kk~~~~~~~~~~~~~ 1007 (1010)
+..+.+.+.+.|++++..+.++...+..++++|.+|..+++.
T Consensus 47 Va~~Q~~L~~riKevd~~~~~l~~~~~erqk~~~k~ae~L~k 88 (131)
T PF10158_consen 47 VAFDQNALAKRIKEVDQEIAKLLQQMVERQKRFAKFAEQLEK 88 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666888999999999999999999999999999999887653
No 67
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=24.49 E-value=1.6e+02 Score=31.17 Aligned_cols=60 Identities=20% Similarity=0.251 Sum_probs=39.8
Q ss_pred HhhhHHHHHHHHhhhhhhhhHHHHHHHHHH-------------hHHHHHHHHHHHhhcccccccCCHHHHHHH
Q 001812 660 MKIVNELESEVRNYGLCIGRHEKALKLLND-------------QKMEVEEVLSKLQVSVEPYSLLTKEEIIRR 719 (1010)
Q Consensus 660 ~~~~~~lq~~l~~lG~kI~~~e~~Lk~Lks-------------qk~~~~~~i~dLq~~l~~~~~st~Eev~k~ 719 (1010)
-+.-.+|+.++..+-.+|.+.++.|..++. +++++++++..|+..|.+|...+|+.+.+.
T Consensus 68 ~~~~~~l~~~~~~~~~~i~~l~~~i~~~~~~r~~~~eR~~~l~~l~~l~~~~~~l~~el~~~~~~Dp~~i~~~ 140 (188)
T PF03962_consen 68 QNKLEKLQKEIEELEKKIEELEEKIEEAKKGREESEEREELLEELEELKKELKELKKELEKYSENDPEKIEKL 140 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 344456666666666666666666666653 366777788888888887766666655544
No 68
>KOG3850 consensus Predicted membrane protein [Function unknown]
Probab=24.28 E-value=2.3e+02 Score=33.81 Aligned_cols=54 Identities=7% Similarity=0.019 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHhhHHHHHHHHHHHhhhc
Q 001812 956 SIEALKQIEEKKLELDGIMQLIQESNKALE-------------------KDLEKLKNSEDKFNSFMDLWQTSL 1009 (1010)
Q Consensus 956 ~~~l~~ql~~l~~e~~~l~e~i~~~~~~l~-------------------~~~~~~~kk~~~~~~~~~~~~~~~ 1009 (1010)
...+.+-...++.+..++.++|+-++...+ +.+..|+||+++--.-++++|..|
T Consensus 35 ~qk~~~~~D~lr~kilk~teqikie~~srd~n~~sylkl~~~ADk~Q~~rIkq~FEkkNqksahtiaqlqkkL 107 (455)
T KOG3850|consen 35 VQKLKEIKDSLRQKILKRTEQIKIEQSSRDGNVASYLKLVNNADKQQVARIKQVFEKKNQKSAHTIAQLQKKL 107 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHhhccchhhhHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 334445555566677788888888777333 788999999998877777777543
No 69
>PRK04406 hypothetical protein; Provisional
Probab=24.25 E-value=2.9e+02 Score=25.70 Aligned_cols=54 Identities=17% Similarity=0.341 Sum_probs=43.3
Q ss_pred HHHHHHHHhhhhhhhhHHHHHHHHHHhHHHHHHHHHHHhhcccccccCCHHHHHHHHHhhcc
Q 001812 664 NELESEVRNYGLCIGRHEKALKLLNDQKMEVEEVLSKLQVSVEPYSLLTKEEIIRRIKSIYQ 725 (1010)
Q Consensus 664 ~~lq~~l~~lG~kI~~~e~~Lk~Lksqk~~~~~~i~dLq~~l~~~~~st~Eev~k~I~~~en 725 (1010)
..|++.|..|=.+|...|+-+..|+....+-..+|..|+..|. -+.+++.+.+.
T Consensus 7 ~~le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~--------~L~~rl~~~~~ 60 (75)
T PRK04406 7 EQLEERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMK--------YVVGKVKNMDS 60 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHhhcc
Confidence 3577888888899999999999999998888888999988775 45566666543
No 70
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=24.09 E-value=3.1e+02 Score=30.23 Aligned_cols=48 Identities=17% Similarity=0.270 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHh
Q 001812 959 ALKQIEEKKLELDGIMQLIQESNKALEKDLEKLKNSEDKFNSFMDLWQ 1006 (1010)
Q Consensus 959 l~~ql~~l~~e~~~l~e~i~~~~~~l~~~~~~~~kk~~~~~~~~~~~~ 1006 (1010)
++.+++.++.....+..+++..+..++.+...++..+.+|.++-..++
T Consensus 92 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~a~~~l~~a~~~~~r~~~L~~ 139 (334)
T TIGR00998 92 LVRQTKQLEITVQQLQAKVESLKIKLEQAREKLLQAELDLRRRVPLFK 139 (334)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 333444444444555566666777777777777777777777765543
No 71
>PRK14144 heat shock protein GrpE; Provisional
Probab=23.92 E-value=2.6e+02 Score=30.37 Aligned_cols=48 Identities=6% Similarity=0.007 Sum_probs=38.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 001812 954 TQSIEALKQIEEKKLELDGIMQLIQESNKALEKDLEKLKNSEDKFNSF 1001 (1010)
Q Consensus 954 ~~~~~l~~ql~~l~~e~~~l~e~i~~~~~~l~~~~~~~~kk~~~~~~~ 1001 (1010)
.++..++.++++++.++..+.+++.|.++..+..++..+|-.++..+|
T Consensus 45 ~~~~~l~~~i~~le~e~~elkdk~lR~~AefeN~RKR~~kE~e~~~~~ 92 (199)
T PRK14144 45 PSYTALEEQLTLAEQKAHENWEKSVRALAELENVRRRMEREVANAHKY 92 (199)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346678888888888888888888899988888888887777766655
No 72
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=23.88 E-value=4.4e+02 Score=31.12 Aligned_cols=124 Identities=20% Similarity=0.224 Sum_probs=0.0
Q ss_pred CCCCcccccCcch----------hHHhhhHHHHHHHHhhhhhhhhHHHHHHHHHHh----HHHHHHHHHHHhhccccccc
Q 001812 645 GPSPIKHVGNHMV----------PIMKIVNELESEVRNYGLCIGRHEKALKLLNDQ----KMEVEEVLSKLQVSVEPYSL 710 (1010)
Q Consensus 645 ~~s~~~~~~~~~~----------~~~~~~~~lq~~l~~lG~kI~~~e~~Lk~Lksq----k~~~~~~i~dLq~~l~~~~~ 710 (1010)
+++|..+++..-+ .+....++--+.+.++=..|++-|++|+.-+++ ++.+|+++..||.+.. .+
T Consensus 195 ~~yp~n~~~~~~irasvisa~~eklR~r~eeeme~~~aeq~slkRt~EeL~~G~~kL~~~~etLEqq~~~L~~niD--IL 272 (365)
T KOG2391|consen 195 EPYPPNASGKLVIRASVISAVREKLRRRREEEMERLQAEQESLKRTEEELNIGKQKLVAMKETLEQQLQSLQKNID--IL 272 (365)
T ss_pred CcCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHhhhH--HH
Q ss_pred CCHHHHHHHHHhhcccccceeeecccccCCCCCCCCCCCceeeeccceeeeccchhhhHHHHhhhhhhhceeEecchHHH
Q 001812 711 LTKEEIIRRIKSIYQSAASVICCSTKEFLCSKPRSNFMEDVVGPVALIGTVCTNKLSRTLAEYLGEHQMLALVCRSFEAA 790 (1010)
Q Consensus 711 st~Eev~k~I~~~ensAA~i~c~l~~r~~~~~~~S~~l~GIiGvVAeLg~V~d~~lsa~LseyLGietmL~IVv~s~e~a 790 (1010)
+++.+. ..++.+|. ... -|-+-+.-....+..+|+-|++-. ..+|+.
T Consensus 273 ~~k~~e--al~~~~n~----------~~~--------------~~D~~~~~~~~l~kq~l~~~A~d~-------aieD~i 319 (365)
T KOG2391|consen 273 KSKVRE--ALEKAENL----------EAL--------------DIDEAIECTAPLYKQILECYALDL-------AIEDAI 319 (365)
T ss_pred HHHHHH--HHhhhccC----------cCC--------------CchhhhhccchHHHHHHHhhhhhh-------HHHHHH
Q ss_pred HHHHHhhhcCCcc
Q 001812 791 FALEKYEQDGTID 803 (1010)
Q Consensus 791 k~le~yl~~g~id 803 (1010)
..|.+=+.+|.|+
T Consensus 320 ~~L~~~~r~G~i~ 332 (365)
T KOG2391|consen 320 YSLGKSLRDGVID 332 (365)
T ss_pred HHHHHHHhcCeee
No 73
>KOG3287 consensus Membrane trafficking protein, emp24/gp25L/p24 family [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.06 E-value=9.2e+02 Score=27.15 Aligned_cols=112 Identities=12% Similarity=0.274 Sum_probs=71.0
Q ss_pred ccEEEEEcCCC--CcceeeccCCCCCceeEEEEeecccccccceeeeeecceeccCCccCCCCcc--eeEEEEecccccc
Q 001812 536 DITFEIVDSKG--AVDVTIHDDDKSGQSHTLTIKSDVINTENSIRYAFRQGRCTVPAISLPQNEG--CFCFVATHSQYTE 611 (1010)
Q Consensus 536 ~l~f~v~d~dG--~vDt~ih~d~~~g~~h~lti~sds~~~~~~iry~f~~g~C~vp~i~lP~~~G--~f~~~~~hs~~~e 611 (1010)
.+.+||||-.| ++|-++|+-. | ..+.+|+.-+++.++.-. .-+| .|||--.||.+-+
T Consensus 59 e~eyQVi~G~GDl~i~Ftl~~P~--G----~~lv~~q~k~dg~ht~e~-------------~e~GdY~~CfDNsFS~fs~ 119 (236)
T KOG3287|consen 59 EVEYQVIDGAGDLDIDFTLLNPA--G----EVLVSDQRKVDGVHTVEV-------------TETGDYQVCFDNSFSTFSR 119 (236)
T ss_pred EEEEEEEecCCccceeeEEeCCC--c----cEEeecccccCceeEeec-------------cCCcceEEEEcCccccccc
Confidence 36789999844 6666666632 2 378888888887776543 2344 4689999999998
Q ss_pred eeeEEeeeeeecCCCCcCCCcCcCCCCceeeccCCCCcccccCcchhHHhhhHHHHHHHHhhhhhhhhHHHHHHHHHHhH
Q 001812 612 LNISIKVPIVRAPKLESDDIRTPCSDGKVFLLEGPSPIKHVGNHMVPIMKIVNELESEVRNYGLCIGRHEKALKLLNDQK 691 (1010)
Q Consensus 612 l~l~~kvqv~~~~~~~~~~~~~~~~q~~~~~l~~~s~~~~~~~~~~~~~~~~~~lq~~l~~lG~kI~~~e~~Lk~Lksqk 691 (1010)
--+-+++-+-....... ++.+.+ |-.+...+|+.++.++++-+...++++
T Consensus 120 K~Vffeli~~~~g~~~e----------------~~e~w~--------------k~~e~~~~Ld~kl~di~~~i~~i~~nl 169 (236)
T KOG3287|consen 120 KLVFFELILDAHGEFYE----------------GDETWH--------------KYKERTEQLDVKLDDIEDSIGTIKNNL 169 (236)
T ss_pred eEEEEEEEeccccchhc----------------cchhHh--------------hhhhhhhhhcccHHHHHHHHHHHHHHH
Confidence 88878775554332220 000000 111111277888888888888888887
Q ss_pred HHHHH
Q 001812 692 MEVEE 696 (1010)
Q Consensus 692 ~~~~~ 696 (1010)
+++..
T Consensus 170 ~k~~~ 174 (236)
T KOG3287|consen 170 NKMWQ 174 (236)
T ss_pred HHHHH
Confidence 76655
No 74
>PRK14146 heat shock protein GrpE; Provisional
Probab=22.92 E-value=2.8e+02 Score=30.43 Aligned_cols=48 Identities=6% Similarity=0.049 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 001812 955 QSIEALKQIEEKKLELDGIMQLIQESNKALEKDLEKLKNSEDKFNSFM 1002 (1010)
Q Consensus 955 ~~~~l~~ql~~l~~e~~~l~e~i~~~~~~l~~~~~~~~kk~~~~~~~~ 1002 (1010)
.+..++.++++++.++..+.+.+.|+++..+..++...|-+++..+|-
T Consensus 55 ~~~~l~~~l~~l~~e~~el~d~~lR~~AdfeN~rkR~~kE~e~~~~~a 102 (215)
T PRK14146 55 TETSLQKELDNAKKEIESLKDSWARERAEFQNFKRRSAQEFVSIRKEA 102 (215)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677778888888888888888888888888888877777776653
No 75
>PF15079 DUF4546: Domain of unknown function (DUF4546)
Probab=22.90 E-value=3e+02 Score=29.64 Aligned_cols=48 Identities=27% Similarity=0.407 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhh
Q 001812 956 SIEALKQIEEKKLELDGIMQLIQESNKALEKDLEKLKNSEDKFNSFMDLWQT 1007 (1010)
Q Consensus 956 ~~~l~~ql~~l~~e~~~l~e~i~~~~~~l~~~~~~~~kk~~~~~~~~~~~~~ 1007 (1010)
-.++..+|.+.+.|+..-.|+|+.+...+++.-.|+ ++|+..|...|.
T Consensus 49 T~eLkNeLREVREELkEKmeEIKQIKdiMDKDFDKL----~EFVEIMKeMQk 96 (205)
T PF15079_consen 49 TQELKNELREVREELKEKMEEIKQIKDIMDKDFDKL----HEFVEIMKEMQK 96 (205)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH----HHHHHHHHHHHH
Confidence 347788888888888888888888888888776655 578877776664
No 76
>PF02996 Prefoldin: Prefoldin subunit; InterPro: IPR004127 This entry comprises of several prefoldin subunits. Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal alpha subunit, eukaryotic prefoldin subunits 3 and 5 and the UXT (ubiquitously expressed transcript) family. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 1FXK_C 2ZDI_C.
Probab=22.82 E-value=2.9e+02 Score=26.21 Aligned_cols=45 Identities=16% Similarity=0.135 Sum_probs=33.8
Q ss_pred ccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001812 950 TRISTQSIEALKQIEEKKLELDGIMQLIQESNKALEKDLEKLKNS 994 (1010)
Q Consensus 950 ~~~~~~~~~l~~ql~~l~~e~~~l~e~i~~~~~~l~~~~~~~~kk 994 (1010)
....+.+.-+.+|++.++..++++.++++..+..+..+...+...
T Consensus 73 ~s~~eA~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~ 117 (120)
T PF02996_consen 73 MSLEEAIEFLKKRIKELEEQLEKLEKELAELQAQIEQLEQTLQQL 117 (120)
T ss_dssp EEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred ecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455677888888888888888888888888888776666543
No 77
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=21.61 E-value=4.4e+02 Score=28.07 Aligned_cols=108 Identities=24% Similarity=0.283 Sum_probs=68.6
Q ss_pred ccccCCCchHhHHHHhhcceEEEechhcHHHHHHhhcCc-eEEccCceeecCceEEeccCCCceeeccccccCchHHHHH
Q 001812 881 RTSAGNGLRETLLYRLFGKLQVYKTRKDMIEAHTCIRHG-AVSLDGGILKEDGIISLGCGNPTICFPIVRTRISTQSIEA 959 (1010)
Q Consensus 881 ~T~~g~GLRetLF~~LFG~tlVfeT~edM~~A~~~i~~g-iVTLDGeIIe~sGamTGGs~~~~v~F~~~~~~~~~~~~~l 959 (1010)
+||+-.|.|.+.+ | |.....|+..++.. =.. -...+.||. ...+.|=..-....+....+
T Consensus 42 RTsAACGFRWNs~--------V---RkqY~~~i~~AKkqRk~~-----~~~~~~ltl---~~vI~fLq~l~~~~~~~~~~ 102 (161)
T TIGR02894 42 RTAAACGFRWNAY--------V---RKQYEEAIELAKKQRKEL-----KREAGSLTL---QDVISFLQNLKTTNPSDQAL 102 (161)
T ss_pred ccHHHhcchHHHH--------H---HHHHHHHHHHHHHHHhcc-----ccCcccCCH---HHHHHHHHHHHhcchhHHHH
Confidence 7999999998764 2 45677788887721 000 000111211 12455544433333445566
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhh
Q 001812 960 LKQIEEKKLELDGIMQLIQESNKALEKDLEKLKNSEDKFNSFMDLWQT 1007 (1010)
Q Consensus 960 ~~ql~~l~~e~~~l~e~i~~~~~~l~~~~~~~~kk~~~~~~~~~~~~~ 1007 (1010)
+.+.+.++.+...+.++++.++..+.+..++...=+++|..++..+..
T Consensus 103 ~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~L~~Im~R 150 (161)
T TIGR02894 103 QKENERLKNQNESLQKRNEELEKELEKLRQRLSTIEEDYQTLIDIMDR 150 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677777777888888888888888888888877778888877776653
No 78
>PRK00846 hypothetical protein; Provisional
Probab=21.32 E-value=3.3e+02 Score=25.70 Aligned_cols=57 Identities=11% Similarity=0.134 Sum_probs=45.2
Q ss_pred hhHHHHHHHHhhhhhhhhHHHHHHHHHHhHHHHHHHHHHHhhcccccccCCHHHHHHHHHhhccc
Q 001812 662 IVNELESEVRNYGLCIGRHEKALKLLNDQKMEVEEVLSKLQVSVEPYSLLTKEEIIRRIKSIYQS 726 (1010)
Q Consensus 662 ~~~~lq~~l~~lG~kI~~~e~~Lk~Lksqk~~~~~~i~dLq~~l~~~~~st~Eev~k~I~~~ens 726 (1010)
....|++.|-.|-.++...|+.|..|+...-+...+|..|+..|. -+..++++++.+
T Consensus 7 ~~~~le~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~--------~L~~rL~~~~~s 63 (77)
T PRK00846 7 RDQALEARLVELETRLSFQEQALTELSEALADARLTGARNAELIR--------HLLEDLGKVRST 63 (77)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHhccc
Confidence 345688888888899999999999999998888888988887774 566667776533
No 79
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=21.03 E-value=67 Score=43.88 Aligned_cols=144 Identities=21% Similarity=0.150 Sum_probs=78.5
Q ss_pred eeEecchHHHHHHHHhhhcC-------------CccccchhhhhhhhcCcccCCee----EEE-----ecCCCCCCCCCC
Q 001812 781 ALVCRSFEAAFALEKYEQDG-------------TIDRKCALHATAAALGKSIDGRY----LVI-----CLEGIRPYSGKF 838 (1010)
Q Consensus 781 ~IVv~s~e~ak~le~yl~~g-------------~id~~~~lh~~~~s~Kr~k~GRa----TFL-----PLn~IRP~~~~~ 838 (1010)
-|+++|.+.....+...... .-..-..|-+.|+.+.+.-.||+ .=| +.--|.|.+
T Consensus 1311 ~IYTDd~~~l~~ai~~~~~k~tA~d~~~~~~~~~~~~a~~~~~~~~~l~~~~~gr~~~~~~~l~~~~~~~~~i~~~~--- 1387 (1623)
T PRK14712 1311 QVYTDNRQGWTDAINNAVQKGTAHDVFEPKPDREVMNAERLFSTARELRDVAAGRAVLRQAGLAGGDSPARFIAPGR--- 1387 (1623)
T ss_pred EEEECCHHHHHHHHhhccCcccHHHHhCcCCccchhHHHHHHHhcCccchhHHHHHHHHhcCCCCCccceeeccCCC---
Confidence 66667765555444443221 11223467788999999999997 222 233344433
Q ss_pred CCCCccccccCCCCCCCCCCCCCCceEEEeccccccccccc-cccccCCCch---H-hHH----HHhhcceEEEechhcH
Q 001812 839 GSNDPQRKLALPAPTLPKGNIPAGFVGYAVNMVNLDDHHMH-IRTSAGNGLR---E-TLL----YRLFGKLQVYKTRKDM 909 (1010)
Q Consensus 839 ~~~dpQr~L~L~~P~L~~g~~~~GFIGyAVNLI~~D~k~~~-~~T~~g~GLR---e-tLF----~~LFG~tlVfeT~edM 909 (1010)
-+||+.++||--. .|| .+.|. .|..+....-. -..-.|-|.. + ..| .+-=|.|++.. +|
T Consensus 1388 --k~p~~~~~~p~~d-~ng-k~ag~-----~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~~~q~s~~~~~~~a~---~~ 1455 (1623)
T PRK14712 1388 --KYPQPYVALPAFD-RNG-KSAGI-----WLNPLTTDDGNGLRGFSGEGRVKGSGDAQFVALQGSRNGESLLAD---NM 1455 (1623)
T ss_pred --CCCCccccccccc-CCC-chhce-----ehhhhhhccCCcCCCcCCcceeeccccceeeeeeccCCCceEecC---CH
Confidence 4688888877544 243 34443 23322111100 0000111111 0 111 22337899977 89
Q ss_pred HHHHHhhc----Cc-eEEccCceeec-CceEEeccC
Q 001812 910 IEAHTCIR----HG-AVSLDGGILKE-DGIISLGCG 939 (1010)
Q Consensus 910 ~~A~~~i~----~g-iVTLDGeIIe~-sGamTGGs~ 939 (1010)
.+|+.+++ .| +|.++|+.--- =++||||-.
T Consensus 1456 ~~~~~~a~~~p~~gv~~~~~~~~~~~~~~~~t~g~~ 1491 (1623)
T PRK14712 1456 QDGVRIARDNPDSGVVVRIAGEGRPWNPGAITGGRV 1491 (1623)
T ss_pred HHHHHHHHhCCCCceEEeeCCCCCCcChhhhcCCcc
Confidence 99999999 33 78899986321 278999984
No 80
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=20.45 E-value=1.8e+02 Score=26.16 Aligned_cols=41 Identities=12% Similarity=0.283 Sum_probs=24.6
Q ss_pred HHHHHHHhhhhhhhhHHHHHHHHHHhHHHHHHHHHHHhhcc
Q 001812 665 ELESEVRNYGLCIGRHEKALKLLNDQKMEVEEVLSKLQVSV 705 (1010)
Q Consensus 665 ~lq~~l~~lG~kI~~~e~~Lk~Lksqk~~~~~~i~dLq~~l 705 (1010)
.++++|..+-.+++.|++.+..|.......+..+..+...|
T Consensus 3 ~i~e~l~~ie~~l~~~~~~i~~lE~~~~~~e~~i~~~~~~l 43 (71)
T PF10779_consen 3 DIKEKLNRIETKLDNHEERIDKLEKRDAANEKDIKNLNKQL 43 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666677777666666666555555544444444
No 81
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=20.22 E-value=2.8e+02 Score=29.20 Aligned_cols=49 Identities=16% Similarity=0.286 Sum_probs=39.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 001812 954 TQSIEALKQIEEKKLELDGIMQLIQESNKALEKDLEKLKNSEDKFNSFM 1002 (1010)
Q Consensus 954 ~~~~~l~~ql~~l~~e~~~l~e~i~~~~~~l~~~~~~~~kk~~~~~~~~ 1002 (1010)
.++..++++|++++.+...+.++.+.++..-.+++.++-.=...|.+|.
T Consensus 27 ~E~~~l~~EL~evk~~v~~~I~evD~Le~~er~aR~rL~eVS~~f~~ys 75 (159)
T PF05384_consen 27 QEYERLRKELEEVKEEVSEVIEEVDKLEKRERQARQRLAEVSRNFDRYS 75 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccC
Confidence 5788888899999988888888888888888888888777777776664
No 82
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=20.17 E-value=7e+02 Score=23.12 Aligned_cols=19 Identities=16% Similarity=-0.071 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 001812 956 SIEALKQIEEKKLELDGIM 974 (1010)
Q Consensus 956 ~~~l~~ql~~l~~e~~~l~ 974 (1010)
+..++.++++++.+...+.
T Consensus 20 i~~Lq~e~eeLke~n~~L~ 38 (72)
T PF06005_consen 20 IALLQMENEELKEKNNELK 38 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHH
Confidence 3334444444444333333
No 83
>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=20.04 E-value=4.4e+02 Score=25.64 Aligned_cols=40 Identities=13% Similarity=0.096 Sum_probs=27.5
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001812 953 STQSIEALKQIEEKKLELDGIMQLIQESNKALEKDLEKLK 992 (1010)
Q Consensus 953 ~~~~~~l~~ql~~l~~e~~~l~e~i~~~~~~l~~~~~~~~ 992 (1010)
.+...-+.++++.++...+++.+.+...++.+......+.
T Consensus 86 ~eA~~~l~~r~~~l~~~~~~l~~~l~~l~~~~~~~~~~l~ 125 (129)
T cd00584 86 EEAIEFLDKKIEELTKQIEKLQKELAKLKDQINTLEAELQ 125 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445667777777777777777777777777776655544
Done!