Query 001812
Match_columns 1010
No_of_seqs 198 out of 229
Neff 3.4
Searched_HMMs 29240
Date Tue Mar 26 16:58:39 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/001812.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1107-1111//hhsearch_pdb/001812hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3nwc_A SMC protein; structural 1.0 1 1 190.4 11.8 149 747-952 32-182 (189)
2 3l51_B Structural maintenance 1.0 1 1 186.1 10.1 140 747-939 15-160 (166)
3 3l51_A Structural maintenance 1.0 1 1 177.3 14.4 147 744-937 10-161 (161)
4 1gxj_A SMC, chromosome segrega 1.0 1 1 156.1 12.0 142 748-940 29-175 (186)
5 1gxl_A SMC, chromosome segrega 1.0 1 1 155.6 14.4 141 748-939 41-186 (213)
6 2wd5_A Structural maintenance 1.0 1 1 154.4 13.3 141 748-940 51-198 (233)
7 2wd5_B Structural maintenance 1.0 1 1 150.1 14.4 138 748-940 46-187 (213)
8 1lwu_C Fibrinogen gamma chain; 1.0 1 1 20.0 5.3 48 658-705 2-49 (323)
9 1m1j_C Fibrinogen gamma chain; 1.0 1 1 16.8 6.0 46 658-703 81-126 (409)
10 3nmd_A CGMP dependent protein 1.0 1 1 16.8 4.9 52 658-709 16-67 (72)
No 1
>3nwc_A SMC protein; structural maintenance of chromosomes (SMC), SMC hinge domai dimerization, DNA binding, cell cycle; 1.70A {Pyrococcus furiosus}
Probab=1.00 E-value=1 Score=190.39 Aligned_cols=149 Identities=19% Similarity=0.235 Sum_probs=128.1
Q ss_pred CCCCEEEECCCEEEECCCHHHHHHHHHHHHHHHCEEEECCHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCCEEEEE
Q ss_conf 78860141022044246224348887531310222673366878999972311885100001344531176669906897
Q 001812 747 FMEDVVGPVALIGTVCTNKLSRTLAEYLGEHQMLALVCRSFEAAFALEKYEQDGTIDRKCALHATAAALGKSIDGRYLVI 826 (1010)
Q Consensus 747 ~l~GIiGvVAeLg~V~d~~lsa~LseyLGietmL~IVv~s~e~ak~le~yl~~g~id~~~~lh~~~~s~Kr~~~GRaTFL 826 (1010)
..+||+|.|++|++|+++.+..+++.+||. .+.+|||+|.++|+.++.|+ ++++.||+|||
T Consensus 32 ~~~gv~G~l~dLi~V~~~kye~Ave~aLG~-~l~~iVVd~~~~A~~~i~~L------------------k~~~~GRatfl 92 (189)
T 3nwc_A 32 GIGGIYGTLAELIKVKDEAYALAIEVALGN-RADNVVVEDELVAEKAIKYL------------------KEHKLGRLTFL 92 (189)
T ss_dssp CCCSEEEEHHHHCEESCGGGHHHHHHHHGG-GGGCEEESSHHHHHHHHHHH------------------HHTTCCCCCEE
T ss_pred CCCCCEEEHHHHEEECHHHHHHHHHHHHCC-CCCCEEECCHHHHHHHHHHH------------------HHCCCCCEEEE
T ss_conf 789855778893156835689999998360-44607878889999999999------------------86488714999
Q ss_pred ECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCEEEEECH
Q ss_conf 51797889999999981001359999999999999705987213213533321011368871586999861264998214
Q 001812 827 CLEGIRPYSGKFGSNDPQRKLALPAPTLPKGNIPAGFVGYAVNMVNLDDHHMHIRTSAGNGLRETLLYRLFGKLQVYKTR 906 (1010)
Q Consensus 827 PLd~IRP~~~~~~~~dpQr~L~L~~P~L~~g~~~~GFIGyAVNLI~~D~k~~~~~T~~g~GLRetIF~~LFG~tlVfeT~ 906 (1010)
||+.|++.. ++ .++|++ |.++|++|++|. .+|+++||+|+|++
T Consensus 93 pl~~i~~~~------------------~~---~~~g~~--a~dlv~~d~~~~------------~a~~~llg~tlvv~-- 135 (189)
T 3nwc_A 93 PLNKIKPKH------------------VD---SSVGLP--AVDVIEYDQKIE------------NAVKFALGDTVIVN-- 135 (189)
T ss_dssp ETTTCCCCC------------------CC---SCSSEE--GGGGEECCGGGH------------HHHHHHHTTEEEES--
T ss_pred ECCCCCCCC------------------CC---CCCCCE--EEEEECCCHHHH------------HHHHHHHCCEEEEC--
T ss_conf 898666666------------------88---999937--765543677788------------99998819989999--
Q ss_pred HCHHHHHHHHCCC-EEECCCCEEECCCEEEECCCC-CCEEECCCCCCC
Q ss_conf 3199999750285-697148443068428826699-721211333567
Q 001812 907 KDMIEAHTCIRHG-AVSLDGGILKEDGIISLGCGN-PTICFPIVRTRI 952 (1010)
Q Consensus 907 edM~~A~~~i~~g-iVTLDGeIIe~sGaiTGGs~~-~~v~F~~~~~~~ 952 (1010)
|++.|+.+.+.. +|||||++++++|+||||+.. ++++|+..+..+
T Consensus 136 -dl~~A~~l~~~~r~VTldGd~i~~~G~~tGG~~~~~~~~f~~~~~~~ 182 (189)
T 3nwc_A 136 -SMEEARPHIGKVRMVTIEGELYERSGAITGGHFRARGLAVDTTKLRL 182 (189)
T ss_dssp -CSGGGGGGTTTSEEEETTSCEECTTSCEECSCSSCCCSEECSSCCCC
T ss_pred -CHHHHHHHHCCCEEEECCCCEEECCEEEEECCCCCCCCEECHHHEEE
T ss_conf -99999998679739968981997888998089899875111222031
No 2
>3l51_B Structural maintenance of chromosomes protein 4; structural maintenance of chromosomes (SMC), hinge domain, C cycle, cell division, cytoplasm; 1.51A {Mus musculus} SCOP: d.215.1.0
Probab=1.00 E-value=1 Score=186.11 Aligned_cols=140 Identities=15% Similarity=0.193 Sum_probs=115.8
Q ss_pred CCCCEEEECCCEEEECCCHHHHHHHHHHHHHHHCEEEECCHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCCEEEEE
Q ss_conf 78860141022044246224348887531310222673366878999972311885100001344531176669906897
Q 001812 747 FMEDVVGPVALIGTVCTNKLSRTLAEYLGEHQMLALVCRSFEAAFALEKYEQDGTIDRKCALHATAAALGKSIDGRYLVI 826 (1010)
Q Consensus 747 ~l~GIiGvVAeLg~V~d~~lsa~LseyLGietmL~IVv~s~e~ak~le~yl~~g~id~~~~lh~~~~s~Kr~~~GRaTFL 826 (1010)
.++||+|.|++|++|+++ +..+++.+|| .|.+|||+|+++|+.++.|+ ++++.||+|||
T Consensus 15 ~~~Gv~G~v~dLi~v~~~-y~~Aie~alg--~l~~iVVd~~~~A~~~i~~L------------------k~~~~GRatfl 73 (166)
T 3l51_B 15 RIPGIYGRLGDLGAIDEK-YDIAISSCCH--ALDYIVVDSIDTAQECVNFL------------------KKHNIGIATFI 73 (166)
T ss_dssp SSTTEEEEGGGSCBCCGG-GHHHHHHHCG--GGGSEEESCHHHHHHHHHHH------------------HHTTCCCCCEE
T ss_pred CCCCCEEEHHHHEEECHH-HHHHHHHHHH--HCCEEEECCHHHHHHHHHHH------------------HHCCCCEEEEE
T ss_conf 999716887780300787-9999999971--28429988799999999999------------------87299707999
Q ss_pred ECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCC-CCCCCCCCCCCCCCCHHHHHHHHHCCEEEEEC
Q ss_conf 51797889999999981001359999999999999705987213213-53332101136887158699986126499821
Q 001812 827 CLEGIRPYSGKFGSNDPQRKLALPAPTLPKGNIPAGFVGYAVNMVNL-DDHHMHIRTSAGNGLRETLLYRLFGKLQVYKT 905 (1010)
Q Consensus 827 PLd~IRP~~~~~~~~dpQr~L~L~~P~L~~g~~~~GFIGyAVNLI~~-D~k~~~~~T~~g~GLRetIF~~LFG~tlVfeT 905 (1010)
||+.|+++... . +.. ..|+.+..|.++|++ |++|. .+|+++||+|+|++
T Consensus 74 pL~~i~~~~~~----~---------~~~----~~~~~~~~a~dlv~~~d~~~~------------~a~~~llg~tlVv~- 123 (166)
T 3l51_B 74 GLDKMTVWAKK----M---------SKI----QTPENTPRLFDLVKVKNEEIR------------QAFYFALRDTLVAN- 123 (166)
T ss_dssp EGGGTGGGTTS----C---------CCC----CCGGGCCBHHHHCBCSCHHHH------------HHHHHHHTTCEEES-
T ss_pred ECCCCCCCCCC----C---------CCC----CCCCCHHHHHHEEECCCHHHH------------HHHHHHCCCEEEEC-
T ss_conf 88655545566----3---------302----266546568520407868899------------99999829989989-
Q ss_pred HHCHHHHHHHHC---CC--EEECCCCEEECCCEEEECCC
Q ss_conf 431999997502---85--69714844306842882669
Q 001812 906 RKDMIEAHTCIR---HG--AVSLDGGILKEDGIISLGCG 939 (1010)
Q Consensus 906 ~edM~~A~~~i~---~g--iVTLDGeIIe~sGaiTGGs~ 939 (1010)
|++.|+.++. .+ +|||||++++++|+|||||-
T Consensus 124 --dl~~A~~~~~~~~~~~r~VTldGdli~~~G~~tGG~~ 160 (166)
T 3l51_B 124 --NLDQATRVAYQRDRRWRVVTLQGQIIEQSGTMSGGLE 160 (166)
T ss_dssp --SHHHHHHHHBCSSCBCCEEETTSCEECTTCCEEECCG
T ss_pred --CHHHHHHHHHHHCCCCEEEECCCEEEECCEEEECCCC
T ss_conf --9999999888608994899789889958988978885
No 3
>3l51_A Structural maintenance of chromosomes protein 2; structural maintenance of chromosomes (SMC), hinge domain, C cycle, cell division, cytoplasm; 1.51A {Mus musculus}
Probab=1.00 E-value=1 Score=177.25 Aligned_cols=147 Identities=21% Similarity=0.216 Sum_probs=119.2
Q ss_pred CCCCCCCEEEECCCEEEECCCHHHHHHHHHHHHHHHCEEEECCHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCCEE
Q ss_conf 98778860141022044246224348887531310222673366878999972311885100001344531176669906
Q 001812 744 RSNFMEDVVGPVALIGTVCTNKLSRTLAEYLGEHQMLALVCRSFEAAFALEKYEQDGTIDRKCALHATAAALGKSIDGRY 823 (1010)
Q Consensus 744 ~S~~l~GIiGvVAeLg~V~d~~lsa~LseyLGietmL~IVv~s~e~ak~le~yl~~g~id~~~~lh~~~~s~Kr~~~GRa 823 (1010)
.+...+||+|.|++|++|+++.+..+++.+||.. |.+|||+|.++|+.+++++ + +.||+
T Consensus 10 ~~~~~~gv~G~v~dLi~v~d~~y~~Ave~alG~~-l~~iVVd~~~~A~~~i~~~------------------~--~~GR~ 68 (161)
T 3l51_A 10 KNWNRNSVKGLVASLINVKDNSTATALEVVAGER-LYNVVVDTEVTAKKLLEKG------------------E--LKRRY 68 (161)
T ss_dssp TTCCGGGEEEEGGGSCEESCGGGHHHHHHHHGGG-GGCEEESCHHHHHHHHHHS------------------C--CSSCE
T ss_pred CCCCCCCCEEEHHHHEEECCHHHHHHHHHHHCCC-CCEEEECCHHHHHHHHHHH------------------H--HCCCE
T ss_conf 9988575478877912518421999999983411-2349989789999999987------------------5--27857
Q ss_pred EEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCEEEE
Q ss_conf 89751797889999999981001359999999999999705987213213533321011368871586999861264998
Q 001812 824 LVICLEGIRPYSGKFGSNDPQRKLALPAPTLPKGNIPAGFVGYAVNMVNLDDHHMHIRTSAGNGLRETLLYRLFGKLQVY 903 (1010)
Q Consensus 824 TFLPLd~IRP~~~~~~~~dpQr~L~L~~P~L~~g~~~~GFIGyAVNLI~~D~k~~~~~T~~g~GLRetIF~~LFG~tlVf 903 (1010)
|||||+.|+++.. +..++. . +.....++.+++|.++|++|++++ .+|+++||+|+|+
T Consensus 69 tflpL~~i~~~~~----~~~~~~------~-~~~~~~~~~~~~a~dlv~~d~~~~------------~a~~~llg~tlv~ 125 (161)
T 3l51_A 69 TIIPLNKISARCI----APETLR------V-AQNLVGPDNVHVALSLVDYKPELQ------------KGMEFVFGTTFVC 125 (161)
T ss_dssp EEEETTTCCCCCC----CHHHHH------H-HHHHHCTTSEEEGGGGEECCGGGH------------HHHHHHHTTCEEE
T ss_pred EEEECCCCCCCCC----CHHHHH------H-HHHCCCCCCHHHHHHHHCCCHHHH------------HHHHHHCCCEEEE
T ss_conf 9998764455676----877775------5-440478861567888850788899------------9999983998999
Q ss_pred ECHHCHHHHHHHHCC-----CEEECCCCEEECCCEEEEC
Q ss_conf 214319999975028-----5697148443068428826
Q 001812 904 KTRKDMIEAHTCIRH-----GAVSLDGGILKEDGIISLG 937 (1010)
Q Consensus 904 eT~edM~~A~~~i~~-----giVTLDGeIIe~sGaiTGG 937 (1010)
+ ||+.|+.++.. ++|||||++++++|+||||
T Consensus 126 ~---dl~~A~~~~~~~~~~~r~VTldGd~i~~~G~~tGG 161 (161)
T 3l51_A 126 N---NMDNAKKVAFDKRIMTRTVTLGGDVFDPHGTLSGG 161 (161)
T ss_dssp S---SHHHHHHHHHCTTTCCCEEETTSCEECCC------
T ss_pred C---CHHHHHHHHHHCCCCCEEEECCCEEECCCEEEECC
T ss_conf 9---99999999974599874996998598587887359
No 4
>1gxj_A SMC, chromosome segregation SMC protein; SMC dimerisation domain, anti parallel coiled coil, SMC proteins; 2.0A {Thermotoga maritima} SCOP: d.215.1.1 PDB: 1gxk_A
Probab=1.00 E-value=1 Score=156.07 Aligned_cols=142 Identities=25% Similarity=0.297 Sum_probs=117.4
Q ss_pred CCCEEEECCCEEEECCCHHHHHHHHHHHHHHHCEEEECCHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCCEEEEEE
Q ss_conf 88601410220442462243488875313102226733668789999723118851000013445311766699068975
Q 001812 748 MEDVVGPVALIGTVCTNKLSRTLAEYLGEHQMLALVCRSFEAAFALEKYEQDGTIDRKCALHATAAALGKSIDGRYLVIC 827 (1010)
Q Consensus 748 l~GIiGvVAeLg~V~d~~lsa~LseyLGietmL~IVv~s~e~ak~le~yl~~g~id~~~~lh~~~~s~Kr~~~GRaTFLP 827 (1010)
.+|++|.|++|++|++. +..+++.+||.. +.+|||++++.++.++.|+ ++.+.||+||+|
T Consensus 29 ~~g~~g~l~~li~v~~~-~e~Ave~aLG~~-l~~ivv~~~~~a~~~i~~l------------------k~~~~gr~tflp 88 (186)
T 1gxj_A 29 FPGLVDVVSNLIEVDEK-YSLAVSVLLGGT-AQNIVVRNVDTAKAIVEFL------------------KQNEAGRVTILP 88 (186)
T ss_dssp CTTEEEEHHHHCBCCGG-GHHHHHHHHGGG-GGCEEESSHHHHHHHHHHH------------------HHHTCCCEEEEE
T ss_pred HCCCCEEHHHEECCCHH-HHHHHHHHHHHH-HHEEEECCHHHHHHHHHHH------------------HHCCCCCEEEEE
T ss_conf 08962245332233889-999999998886-5189989899999999999------------------856998369987
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCEEEEECHH
Q ss_conf 17978899999999810013599999999999997059872132135333210113688715869998612649982143
Q 001812 828 LEGIRPYSGKFGSNDPQRKLALPAPTLPKGNIPAGFVGYAVNMVNLDDHHMHIRTSAGNGLRETLLYRLFGKLQVYKTRK 907 (1010)
Q Consensus 828 Ld~IRP~~~~~~~~dpQr~L~L~~P~L~~g~~~~GFIGyAVNLI~~D~k~~~~~T~~g~GLRetIF~~LFG~tlVfeT~e 907 (1010)
++.+++... . . +.+ ..++|++++|.++|++|+++. .++.++||+++|++
T Consensus 89 l~~~~~~~~--~--~---------~~~---~~~~g~~~~~~dlv~~~~~~~------------~~~~~~lg~~~v~~--- 137 (186)
T 1gxj_A 89 LDLIDGSFN--R--I---------SGL---ENERGFVGYAVDLVKFPSDLE------------VLGGFLFGNSVVVE--- 137 (186)
T ss_dssp TTTCCCCCC--C--C---------TTG---GGSTTEEEEHHHHCBCCGGGH------------HHHHHHHTTCEEES---
T ss_pred CCCCCCCCC--C--C---------HHC---CCCCCCHHHHHHHCCCCHHHH------------HHHHHHCCCEEEEC---
T ss_conf 332577766--2--0---------110---268971578988715878999------------99999849989999---
Q ss_pred CHHHHHHHHC---C--CEEECCCCEEECCCEEEECCCC
Q ss_conf 1999997502---8--5697148443068428826699
Q 001812 908 DMIEAHTCIR---H--GAVSLDGGILKEDGIISLGCGN 940 (1010)
Q Consensus 908 dM~~A~~~i~---~--giVTLDGeIIe~sGaiTGGs~~ 940 (1010)
+++.|+.+.. . .+||+||++++++|+|+||+..
T Consensus 138 ~l~~A~~l~~~~~~~~~~VTldG~~~~~~G~~~gG~~~ 175 (186)
T 1gxj_A 138 TLDDAIRMKKKYRLNTRIATLDGELISGRGAITGGREE 175 (186)
T ss_dssp CHHHHHHHHHHHTCCSCEEETTSCEECTTSCEEEEEC-
T ss_pred CHHHHHHHHHHCCCCCEEEECCCEEECCCEEEECCCCC
T ss_conf 99999999984499864996898098699779789887
No 5
>1gxl_A SMC, chromosome segregation SMC protein; SMC dimerisation domain, anti parallel coiled coil, SMC proteins; 3.0A {Thermotoga maritima} SCOP: d.215.1.1
Probab=1.00 E-value=1 Score=155.57 Aligned_cols=141 Identities=26% Similarity=0.316 Sum_probs=117.0
Q ss_pred CCCEEEECCCEEEECCCHHHHHHHHHHHHHHHCEEEECCHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCCEEEEEE
Q ss_conf 88601410220442462243488875313102226733668789999723118851000013445311766699068975
Q 001812 748 MEDVVGPVALIGTVCTNKLSRTLAEYLGEHQMLALVCRSFEAAFALEKYEQDGTIDRKCALHATAAALGKSIDGRYLVIC 827 (1010)
Q Consensus 748 l~GIiGvVAeLg~V~d~~lsa~LseyLGietmL~IVv~s~e~ak~le~yl~~g~id~~~~lh~~~~s~Kr~~~GRaTFLP 827 (1010)
.+|++|.|++|++| ++.+..+++.+||. .+.+|||++++.++.++.|+ ++...||+||+|
T Consensus 41 ~~g~~g~l~~li~v-~~~~e~Ave~aLg~-~l~~ivv~~~~~a~~~i~~l------------------k~~~~gr~~~lp 100 (213)
T 1gxl_A 41 FPGLVDVVSNLIEV-DEKYSLAVSVLLGG-TAQNIVVRNVDTAKAIVEFL------------------KQNEAGRVTILP 100 (213)
T ss_dssp CTTEEEEGGGTCBC-CHHHHHHHHHHHGG-GGGCEEESSHHHHHHHHHHH------------------HHHTCEEEEEEE
T ss_pred HCCCCEEHHHEEEE-CHHHHHHHHHHHHH-HHCEEEECCHHHHHHHHHHH------------------HHCCCCCEEEEE
T ss_conf 08973133420540-89999999999878-65679989899999999999------------------856998259987
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCEEEEECHH
Q ss_conf 17978899999999810013599999999999997059872132135333210113688715869998612649982143
Q 001812 828 LEGIRPYSGKFGSNDPQRKLALPAPTLPKGNIPAGFVGYAVNMVNLDDHHMHIRTSAGNGLRETLLYRLFGKLQVYKTRK 907 (1010)
Q Consensus 828 Ld~IRP~~~~~~~~dpQr~L~L~~P~L~~g~~~~GFIGyAVNLI~~D~k~~~~~T~~g~GLRetIF~~LFG~tlVfeT~e 907 (1010)
++.+++... . . +.+ ..++|+++++.++|++|+.+. .++.++||+++|++
T Consensus 101 l~~~~~~~~--~--~---------~~~---~~~~g~~~~~~d~v~~~~~~~------------~~~~~~lg~~~vv~--- 149 (213)
T 1gxl_A 101 LDLIDGSFN--R--I---------SGL---ENERGFVGYAVDLVKFPSDLE------------VLGGFLFGNSVVVE--- 149 (213)
T ss_dssp TTTSCCCCC--C--C---------TTG---GGSTTEEEEGGGGCBCCSTTH------------HHHHHHSSSEEEES---
T ss_pred CHHCCCCCC--C--C---------HHH---HCCCCCHHHHHHHHCCCHHHH------------HHHHHHHCCEEEEC---
T ss_conf 311278875--2--0---------011---047971778988804878999------------99999809989998---
Q ss_pred CHHHHHHHHC---CC--EEECCCCEEECCCEEEECCC
Q ss_conf 1999997502---85--69714844306842882669
Q 001812 908 DMIEAHTCIR---HG--AVSLDGGILKEDGIISLGCG 939 (1010)
Q Consensus 908 dM~~A~~~i~---~g--iVTLDGeIIe~sGaiTGGs~ 939 (1010)
+++.|+.++. .+ +||+||++++++|+|+||+.
T Consensus 150 ~l~~A~~~~~~~~~~~~~VT~~G~~~~~~G~~~gg~~ 186 (213)
T 1gxl_A 150 TLDDAIRMKKKYRLNTRIATLDGELISGRGAITGGRE 186 (213)
T ss_dssp SHHHHHHHHHHTCSSCEEECTTSCEECTTSCEEECCC
T ss_pred CHHHHHHHHHHCCCCCEEEECCCEEECCCCEEECCCC
T ss_conf 9999999998459980599549969868906988987
No 6
>2wd5_A Structural maintenance of chromosomes protein 1A; DNA damage, cell cycle, cell division; 2.70A {Mus musculus}
Probab=1.00 E-value=1 Score=154.38 Aligned_cols=141 Identities=18% Similarity=0.236 Sum_probs=115.2
Q ss_pred CCC-EEEECCCEEEECCCHHHHHHHHHHHHHHHCEEEECCHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCCEEEEE
Q ss_conf 886-0141022044246224348887531310222673366878999972311885100001344531176669906897
Q 001812 748 MED-VVGPVALIGTVCTNKLSRTLAEYLGEHQMLALVCRSFEAAFALEKYEQDGTIDRKCALHATAAALGKSIDGRYLVI 826 (1010)
Q Consensus 748 l~G-IiGvVAeLg~V~d~~lsa~LseyLGietmL~IVv~s~e~ak~le~yl~~g~id~~~~lh~~~~s~Kr~~~GRaTFL 826 (1010)
++| |+|.|++|++|.++.+..+++.+||. .+.+|||+++++++.++.|+ ++.+.||+||+
T Consensus 51 ~~g~v~G~l~dli~v~~~~ye~Ave~aLG~-~l~~iVV~~~~~a~~~i~~L------------------k~~~~Gr~tfl 111 (233)
T 2wd5_A 51 YPGSVYGRLIDLCQPTQKKYQIAVTKVLGK-NMDAIIVDSEKTGRDCIQYI------------------KEQRGEPETFL 111 (233)
T ss_dssp SGGGEEEEHHHHEEESSGGGHHHHHHHHGG-GGSCEEESCHHHHHHHHHHH------------------HHTTCCCEEEE
T ss_pred CCCCEEEEHHHHCEECCHHHHHHHHHHHHH-HHCEEEECCHHHHHHHHHHH------------------HHCCCCCEEEE
T ss_conf 899866667895122868999999999888-65579989899999999999------------------86599971799
Q ss_pred ECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCC-CCCCCCCCCCCCCCCHHHHHHHHHCCEEEEEC
Q ss_conf 51797889999999981001359999999999999705987213213-53332101136887158699986126499821
Q 001812 827 CLEGIRPYSGKFGSNDPQRKLALPAPTLPKGNIPAGFVGYAVNMVNL-DDHHMHIRTSAGNGLRETLLYRLFGKLQVYKT 905 (1010)
Q Consensus 827 PLd~IRP~~~~~~~~dpQr~L~L~~P~L~~g~~~~GFIGyAVNLI~~-D~k~~~~~T~~g~GLRetIF~~LFG~tlVfeT 905 (1010)
||+.+++... +. .++ .++|+ ..+.++|++ ++.+. .+++++||+++|++
T Consensus 112 pl~~i~~~~~----~~----------~~~---~~~g~-~~l~dlV~~~~~~~~------------~~~~~~Lg~~~vv~- 160 (233)
T 2wd5_A 112 PLDYLEVKPT----DE----------KLR---ELKGA-KLVIDVIRYEPPHIK------------KALQYACGNALVCD- 160 (233)
T ss_dssp ETTTCCCCCC----CG----------GGG---GCSSC-EESGGGEEESSGGGH------------HHHHHHTTTCEEES-
T ss_pred ECCCCCCCCC----CH----------HCC---CCCCC-HHHHHHHHCCCHHHH------------HHHHHHHCCEEEEC-
T ss_conf 7731366775----21----------105---87884-478876517868899------------99999929989999-
Q ss_pred HHCHHHHHHHHC-----CCEEECCCCEEECCCEEEECCCC
Q ss_conf 431999997502-----85697148443068428826699
Q 001812 906 RKDMIEAHTCIR-----HGAVSLDGGILKEDGIISLGCGN 940 (1010)
Q Consensus 906 ~edM~~A~~~i~-----~giVTLDGeIIe~sGaiTGGs~~ 940 (1010)
+++.|+.++. ..+||+||++++++|+|+||+..
T Consensus 161 --dl~~A~~l~~~~~~~~r~VTldG~~~~~~G~~tGG~~~ 198 (233)
T 2wd5_A 161 --NVEDARRIAFGGHQRHKTVALDGTLFQKSGVISGGASD 198 (233)
T ss_dssp --SHHHHHHHHHSSSSCCCEEETTCCEECTTSCEEECHHH
T ss_pred --CHHHHHHHHHHCCCCCEEEECCCEEEECCEEEECCCCH
T ss_conf --99999999984699816995698798089268689952
No 7
>2wd5_B Structural maintenance of chromosomes protein 3; DNA damage, cell cycle, cell division; 2.70A {Mus musculus}
Probab=1.00 E-value=1 Score=150.12 Aligned_cols=138 Identities=13% Similarity=0.139 Sum_probs=114.0
Q ss_pred CCCEEEECCCEEEECCCHHHHHHHHHHHHHHHCEEEECCHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCC-CCEEEEE
Q ss_conf 886014102204424622434888753131022267336687899997231188510000134453117666-9906897
Q 001812 748 MEDVVGPVALIGTVCTNKLSRTLAEYLGEHQMLALVCRSFEAAFALEKYEQDGTIDRKCALHATAAALGKSI-DGRYLVI 826 (1010)
Q Consensus 748 l~GIiGvVAeLg~V~d~~lsa~LseyLGietmL~IVv~s~e~ak~le~yl~~g~id~~~~lh~~~~s~Kr~~-~GRaTFL 826 (1010)
.+|++|.|++|++|+ +.+..+++.+||. .+.+|||++++.++.++.|+ ++.+ .||+||+
T Consensus 46 ~~g~~g~l~dli~v~-~~~e~Ave~aLG~-~l~~iVV~~~~~a~~~i~~l------------------~~~~~~gr~tfl 105 (213)
T 2wd5_B 46 QNGYHGIVMNNFECE-PAFYTCVEVTAGN-RLFYHIVDSDEVSTKILMEF------------------NKMNLPGEVTFL 105 (213)
T ss_dssp HTTEEEEGGGSEECC-GGGHHHHHHHHTT-GGGCEEESCHHHHHHHHHHH------------------HHTTCCCCEEEE
T ss_pred CCCCEEEHHHHCCCC-HHHHHHHHHHHHH-HHHEEEECCHHHHHHHHHHH------------------HHCCCCCCEEEE
T ss_conf 787625699960667-8899999999747-76278989899999999999------------------857998616999
Q ss_pred ECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCEEEEECH
Q ss_conf 51797889999999981001359999999999999705987213213533321011368871586999861264998214
Q 001812 827 CLEGIRPYSGKFGSNDPQRKLALPAPTLPKGNIPAGFVGYAVNMVNLDDHHMHIRTSAGNGLRETLLYRLFGKLQVYKTR 906 (1010)
Q Consensus 827 PLd~IRP~~~~~~~~dpQr~L~L~~P~L~~g~~~~GFIGyAVNLI~~D~k~~~~~T~~g~GLRetIF~~LFG~tlVfeT~ 906 (1010)
|++.+++... ..|. .+|+++ +.++|++|+.+. .+++++||+++|++
T Consensus 106 pl~~~~~~~~----------------~~~~---~~~~~~-l~~~v~~~~~~~------------~~~~~~l~~~~vv~-- 151 (213)
T 2wd5_B 106 PLNKLDVRDT----------------AYPE---TNDAIP-MISKLRYNPRFD------------KAFKHVFGKTLICR-- 151 (213)
T ss_dssp ETTTCCCCCC----------------CCCC---CSSEEE-GGGGCEECGGGH------------HHHHHHHTTEEEES--
T ss_pred ECCCCCCCCC----------------CCCC---CCCCEE-HHHHCCCCHHHH------------HHHHHHCCCEEEEC--
T ss_conf 7844675667----------------8777---788333-998855768899------------99999819989999--
Q ss_pred HCHHHHHHHHC---CCEEECCCCEEECCCEEEECCCC
Q ss_conf 31999997502---85697148443068428826699
Q 001812 907 KDMIEAHTCIR---HGAVSLDGGILKEDGIISLGCGN 940 (1010)
Q Consensus 907 edM~~A~~~i~---~giVTLDGeIIe~sGaiTGGs~~ 940 (1010)
+++.|+.++. ..+||+||++++++|+|+||+..
T Consensus 152 -~l~~A~~l~~~~~~~~VTldG~~~~~~G~~tgG~~~ 187 (213)
T 2wd5_B 152 -SMEVSTQLARAFTMDCITLEGDQVSHRGALTGGYYD 187 (213)
T ss_dssp -SHHHHHHHHHHSSCEEECTTCCEECTTSCEEECCCC
T ss_pred -CHHHHHHHHHHCCCEEEECCCCEECCCEEEECCCCC
T ss_conf -999999998754965996998088798478799997
No 8
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=1.00 E-value=1 Score=20.01 Aligned_cols=48 Identities=19% Similarity=0.169 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 477653888999985201255378898987976899999999985312
Q 001812 658 PIMKIVNELESEVRNYGLCIGRHEKALKLLNDQKMEVEEVLSKLQVSV 705 (1010)
Q Consensus 658 ~~~~~~~~lq~~l~~lG~kI~~~e~~lk~Lksqk~~~~~~i~dLq~~l 705 (1010)
++...+.+|++++..|...|..++.+|..|..+...++..|.+|+..+
T Consensus 2 ~~~~~~~~~~~~~~~~e~~i~~~~~~i~~L~~~l~~~~~~i~~l~~~i 49 (323)
T 1lwu_C 2 SGQKTVQKILEEVRILEQIGVSHDAQIQELSEMWRVNQQFVTRLQQQL 49 (323)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 078889999999999998873689999999999999999999999999
No 9
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=1.00 E-value=1 Score=16.81 Aligned_cols=46 Identities=17% Similarity=0.290 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 4776538889999852012553788989879768999999999853
Q 001812 658 PIMKIVNELESEVRNYGLCIGRHEKALKLLNDQKMEVEEVLSKLQV 703 (1010)
Q Consensus 658 ~~~~~~~~lq~~l~~lG~kI~~~e~~lk~Lksqk~~~~~~i~dLq~ 703 (1010)
.+.+.+++|.+++..|-..|..++.+|..|..+....+..|..|+.
T Consensus 81 ~~tq~skkml~~~~~~e~~~~~~~~~i~~l~~~~~~~~~~i~~l~~ 126 (409)
T 1m1j_C 81 QLTQKSKKIIEEIIRYENTILAHENTIQQLTDMHIMNSNKITQLKQ 126 (409)
T ss_dssp HHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 6777899999999999988603577999999998764799999999
No 10
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=1.00 E-value=1 Score=16.76 Aligned_cols=52 Identities=12% Similarity=0.128 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 4776538889999852012553788989879768999999999853125565
Q 001812 658 PIMKIVNELESEVRNYGLCIGRHEKALKLLNDQKMEVEEVLSKLQVSVEPYS 709 (1010)
Q Consensus 658 ~~~~~~~~lq~~l~~lG~kI~~~e~~lk~Lksqk~~~~~~i~dLq~~l~~y~ 709 (1010)
.-|-+-.+||+.|+.--.+|.+-+..|+.|..+..+.++.|..||..|-+|-
T Consensus 16 ~~mgti~eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseLDKfr 67 (72)
T 3nmd_A 16 EGRGSLRDLQYALQEKIEELRQRDALIDELELELDQKDELIQMLQNELDKYR 67 (72)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 2677499999999999999997899999999999999999999999998755
Done!