BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 001814
(1010 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3VU4|A Chain A, Crystal Structure Of Kluyvelomyces Marxianus Hsv2
pdb|3VU4|B Chain B, Crystal Structure Of Kluyvelomyces Marxianus Hsv2
Length = 355
Score = 36.6 bits (83), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 40/94 (42%), Gaps = 17/94 (18%)
Query: 365 FKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYK 424
KAHT+PI + + ++ T S G I +F+ V + +
Sbjct: 191 IKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFK-----------------TEDGVLVRE 233
Query: 425 LHRGITSATIQDICFSHYSQWIAIVSSKGTCHVF 458
RG+ A + D+ +S +A+VS K T HVF
Sbjct: 234 FRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVF 267
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 35.8 bits (81), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 22/40 (55%)
Query: 349 GIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTAS 388
GI+ + D T ++ + H PI +L F P LLVTAS
Sbjct: 186 GIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTAS 225
>pdb|1YEY|A Chain A, Crystal Structure Of L-Fuconate Dehydratase From
Xanthomonas Campestris Pv. Campestris Str. Atcc 33913
pdb|1YEY|B Chain B, Crystal Structure Of L-Fuconate Dehydratase From
Xanthomonas Campestris Pv. Campestris Str. Atcc 33913
pdb|1YEY|C Chain C, Crystal Structure Of L-Fuconate Dehydratase From
Xanthomonas Campestris Pv. Campestris Str. Atcc 33913
pdb|1YEY|D Chain D, Crystal Structure Of L-Fuconate Dehydratase From
Xanthomonas Campestris Pv. Campestris Str. Atcc 33913
Length = 444
Score = 35.8 bits (81), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 24/52 (46%)
Query: 214 YCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLL 265
Y DALT + ++L PQ A + A I GY P WL Y+ L+
Sbjct: 155 YLSDALTRDEALAILRDAQPQRAARTATLIEQGYPAYTTSPGWLGYSDEKLV 206
>pdb|4AV8|A Chain A, Kluyveromyces Lactis Hsv2 Complete Loop 6cd
pdb|4AV9|A Chain A, Kluyveromyces Lactis Hsv2
pdb|4EXV|A Chain A, Structure Of Kluyveromyces Lactis Hsv2p
Length = 339
Score = 35.8 bits (81), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 41/93 (44%), Gaps = 17/93 (18%)
Query: 366 KAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKL 425
KAH +P+ + + G ++ T S G I +F+ + V + +
Sbjct: 176 KAHANPVKMVRLNRKGDMVATCSQDGTLIRVFQ-----------------TDNGVLVREF 218
Query: 426 HRGITSATIQDICFSHYSQWIAIVSSKGTCHVF 458
RG+ +I D+ +S +A+VS K T HVF
Sbjct: 219 RRGLDRTSIIDMRWSPDGSKLAVVSDKWTLHVF 251
>pdb|2HXT|A Chain A, Crystal Structure Of L-Fuconate Dehydratase From
Xanthomonas Campestris Liganded With Mg++ And
D-Erythronohydroxamate
Length = 441
Score = 35.4 bits (80), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 24/52 (46%)
Query: 214 YCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLL 265
Y DALT + ++L PQ A + A I GY P WL Y+ L+
Sbjct: 152 YLSDALTRDEALAILRDAQPQRAARTATLIEQGYPAYTTSPGWLGYSDEKLV 203
>pdb|2HXU|A Chain A, Crystal Structure Of K220a Mutant Of L-Fuconate
Dehydratase From Xanthomonas Campestris Liganded With
Mg++ And L-Fuconate
Length = 441
Score = 35.4 bits (80), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 24/52 (46%)
Query: 214 YCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLL 265
Y DALT + ++L PQ A + A I GY P WL Y+ L+
Sbjct: 152 YLSDALTRDEALAILRDAQPQRAARTATLIEQGYPAYTTSPGWLGYSDEKLV 203
>pdb|2HNE|A Chain A, Crystal Structure Of L-fuconate Dehydratase From
Xanthomonas Campestris Pv. Campestris Str. Atcc 33913
pdb|2HNE|B Chain B, Crystal Structure Of L-fuconate Dehydratase From
Xanthomonas Campestris Pv. Campestris Str. Atcc 33913
pdb|2HNE|C Chain C, Crystal Structure Of L-fuconate Dehydratase From
Xanthomonas Campestris Pv. Campestris Str. Atcc 33913
pdb|2HNE|D Chain D, Crystal Structure Of L-fuconate Dehydratase From
Xanthomonas Campestris Pv. Campestris Str. Atcc 33913
Length = 436
Score = 35.4 bits (80), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 24/52 (46%)
Query: 214 YCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLL 265
Y DALT + ++L PQ A + A I GY P WL Y+ L+
Sbjct: 152 YLSDALTRDEALAILRDAQPQRAARTATLIEQGYPAYTTSPGWLGYSDEKLV 203
>pdb|3C98|A Chain A, Revised Structure Of The Munc18a-Syntaxin1 Complex
Length = 606
Score = 30.4 bits (67), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 53/127 (41%), Gaps = 9/127 (7%)
Query: 618 PVQWWDVCRRSDWPEREEFISEATCDGHGAVEIFQNKSDCEDNYGIDFLDIND----CIV 673
P+ RR PER+E ISE T I + D ++ D LD
Sbjct: 461 PIVTDSTLRRRSKPERKERISEQTYQLSRWTPIIK---DIMEDTIEDKLDTKHYPYISTR 517
Query: 674 EKSTFKNCSVKSYERSHWYLSNAEVQMSSG-RLPIWQSSKISFFKMDSPRANTHASGEFE 732
++F +V S HW+ + A + SG RL I+ +S +M T A+G++E
Sbjct: 518 SSASFSTTAV-SARYGHWHKNKAPGEYRSGPRLIIFILGGVSLNEMRCAYEVTQANGKWE 576
Query: 733 IEKVSVH 739
+ S H
Sbjct: 577 VLIGSTH 583
>pdb|3PUJ|A Chain A, Crystal Structure Of The Munc18-1 And Syntaxin4 N-Peptide
Complex
pdb|3PUJ|B Chain B, Crystal Structure Of The Munc18-1 And Syntaxin4 N-Peptide
Complex
Length = 594
Score = 30.0 bits (66), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 53/127 (41%), Gaps = 9/127 (7%)
Query: 618 PVQWWDVCRRSDWPEREEFISEATCDGHGAVEIFQNKSDCEDNYGIDFLDIND----CIV 673
P+ RR PER+E ISE T I + D ++ D LD
Sbjct: 449 PIVTDSTLRRRSKPERKERISEQTYQLSRWTPIIK---DIMEDTIEDKLDTKHYPYISTR 505
Query: 674 EKSTFKNCSVKSYERSHWYLSNAEVQMSSG-RLPIWQSSKISFFKMDSPRANTHASGEFE 732
++F +V S HW+ + A + SG RL I+ +S +M T A+G++E
Sbjct: 506 SSASFSTTAV-SARYGHWHKNKAPGEYRSGPRLIIFILGGVSLNEMRCAYEVTQANGKWE 564
Query: 733 IEKVSVH 739
+ S H
Sbjct: 565 VLIGSTH 571
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,438,551
Number of Sequences: 62578
Number of extensions: 1210925
Number of successful extensions: 2347
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 2333
Number of HSP's gapped (non-prelim): 18
length of query: 1010
length of database: 14,973,337
effective HSP length: 108
effective length of query: 902
effective length of database: 8,214,913
effective search space: 7409851526
effective search space used: 7409851526
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)