Query 001814
Match_columns 1010
No_of_seqs 348 out of 2250
Neff 5.2
Searched_HMMs 29240
Date Tue Mar 26 15:48:33 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/001814.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1112-1116//hhsearch_pdb/001814hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3vu4_A KMHSV2; beta-propeller 1.0 1 1 234.3 38.1 307 52-588 15-338 (355)
2 1vyh_C Platelet-activating fac 1.0 1 1 213.6 32.7 294 52-461 104-410 (410)
3 3ow8_A WD repeat-containing pr 1.0 1 1 206.3 37.9 285 50-461 26-320 (321)
4 1nr0_A Actin interacting prote 1.0 1 1 205.0 34.1 100 344-462 165-270 (611)
5 4g56_B MGC81050 protein; prote 1.0 1 1 202.2 29.6 286 52-467 38-348 (357)
6 2ymu_A WD-40 repeat protein; u 1.0 1 1 200.0 34.1 269 52-461 12-292 (577)
7 4gqb_B Methylosome protein 50; 1.0 1 1 198.9 33.9 280 53-463 27-332 (344)
8 1nr0_A Actin interacting prote 1.0 1 1 197.6 33.3 321 52-462 55-397 (611)
9 3dm0_A Maltose-binding peripla 1.0 1 1 194.1 32.9 281 18-463 342-633 (694)
10 1got_B GT-beta; complex (GTP-b 1.0 1 1 192.9 37.3 241 52-462 51-301 (340)
No 1
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=1.00 E-value=1 Score=234.34 Aligned_cols=307 Identities=18% Similarity=0.177 Sum_probs=218.9
Q ss_pred CCCCCCCEEEEEEEECCCCCCCCCEEEEEEECCCEEEEECCCCCCCEEEEEECCCCEEEEEEECCCCCCCCCCCCCCCCC
Q ss_conf 87998868999973225799888819999904838999745889604761110677899999158987878888555676
Q 001814 52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNGFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHP 131 (1010)
Q Consensus 52 ~~~~kd~V~wa~Fd~le~~~~~~~~vLllGy~~GiqVWDl~~~g~v~ellS~hdGpV~~l~ilP~P~~s~~~D~F~~srp 131 (1010)
...|++.|..+.|.. ++++|++|.++|++||++++ ...+...+.+.+..+.+.+.+ .
T Consensus 15 ~~~h~~~V~~v~fs~-------dg~~la~g~~~~~~iw~~~~---~~~~~~~~~~~~~~~~~~~~~-------------~ 71 (355)
T 3vu4_A 15 ENHVSNPVTDYEFNQ-------DQSCLILSTLKSFEIYNVHP---VAHIMSQEMRHLSKVRMLHRT-------------N 71 (355)
T ss_dssp ----CCCCCEEEECT-------TSSEEEEECSSEEEEEEETT---EEEEEEEECSCCCEEEECTTS-------------S
T ss_pred CCCCCCCEEEEEECC-------CCCEEEEECCCEEEEEECCC---CCEEEEEECCCEEEEEECCCC-------------C
T ss_conf 125788357999999-------99889997488799994677---512555405976799995779-------------9
Q ss_pred EEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEEEECCCCEEEEEECCCEEEEEECC
Q ss_conf 89999667888789998877766544587677899877889879998689990999992799689999758759999499
Q 001814 132 FLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSPRIVAVGLAT 211 (1010)
Q Consensus 132 LLAvV~gd~~~~s~~~q~~~~~~~vr~G~~d~~~~~~~~sp~tVrIWDlksge~V~tLkf~S~V~sI~~s~~iLAVsl~~ 211 (1010)
++++++++ +++|++||+++++++.++.+++.|.++.++++.++++.++
T Consensus 72 ~~~~~~~~--------------------------------d~~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~ 119 (355)
T 3vu4_A 72 YVAFVTGV--------------------------------KEVVHIWDDVKKQDVSRIKVDAPVKDLFLSREFIVVSYGD 119 (355)
T ss_dssp EEEEECSS--------------------------------TTEEEEEETTTTEEEEEEECSSCEEEEEECSSEEEEEETT
T ss_pred EEEEEECC--------------------------------CCEEEEEECCCCCEEEEEECCCCEEEEEECCCEEEEEECC
T ss_conf 89999799--------------------------------6689999999995999998788467899749879999939
Q ss_pred EEEEEECCCC-CEEEEEEECCCCCCCCCCCCCCCCCCCCEEECCCEEEECCCCEEECCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 2999978999-524899305995456787534334754069831369970697043168865777678888889858999
Q 001814 212 QIYCFDALTL-ENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGG 290 (1010)
Q Consensus 212 ~I~IfDl~Tl-e~l~tL~t~psp~~~~~~~~~inv~~gpiAlgpRwLAYas~~~~iwd~G~vs~q~lt~pv~S~stSps~ 290 (1010)
.|++||+.+. +.+.++.+ + .+.+++++.++|++
T Consensus 120 ~i~i~d~~~~~~~~~~~~~-~---------------~~~~~~s~~~la~~------------------------------ 153 (355)
T 3vu4_A 120 VISVFKFGNPWKRITDDIR-F---------------GGVCEFSNGLLVYS------------------------------ 153 (355)
T ss_dssp EEEEEESSTTCCBSSCCEE-E---------------EEEEEEETTEEEEE------------------------------
T ss_pred EEEEEECCCCCEEEEEECC-C---------------CCEEEEECCEEEEE------------------------------
T ss_conf 8999988877304577616-8---------------94699980689996------------------------------
Q ss_pred CCEEEEEEHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCC----------
Q ss_conf 9307874011226552144200012212325899888865897554464342024799719999889892----------
Q 001814 291 SSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRA---------- 360 (1010)
Q Consensus 291 gslVa~~A~dssk~la~Gi~KtLs~y~~~l~p~gs~s~~s~s~~~k~~~~~~~sgs~dG~V~VwDl~s~~---------- 360 (1010)
++..+|.|++||+.++.
T Consensus 154 -----------------------------------------------------sg~~~g~v~iwd~~~~~~~~~~~~~~~ 180 (355)
T 3vu4_A 154 -----------------------------------------------------NEFNLGQIHITKLQSSGSATTQDQGVQ 180 (355)
T ss_dssp -----------------------------------------------------ESSCTTCEEEEECCC------------
T ss_pred -----------------------------------------------------CCCCCCEEEEEECCCCCCCCCCCCCCC
T ss_conf -----------------------------------------------------888686899998878876532335544
Q ss_pred ------EEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCE
Q ss_conf ------88880138888599999899999999975999699995788865589998854468861089999526545519
Q 001814 361 ------IISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATI 434 (1010)
Q Consensus 361 ------~i~~l~aHtspIsaLaFSPdGtlLATAS~dGt~IrVfdI~p~~~~~~sG~~~~~~~ss~~~Ly~L~RG~t~a~I 434 (1010)
.+..+.+|..+|.+++|+|+|++|||++.+|+.|+|||+.. + ..++++++|.+...|
T Consensus 181 ~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~-------~----------~~~~~~~~g~h~~~v 243 (355)
T 3vu4_A 181 QKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTED-------G----------VLVREFRRGLDRADV 243 (355)
T ss_dssp ------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTT-------C----------CEEEEEECTTCCSCE
T ss_pred CCCCCCCCEEEECCCCCEEEEEECCCCCEEEEEECCCCEEEEEECCC-------C----------CEEEEEECCCCCCCE
T ss_conf 34347611799766784589999999999999958998999999899-------9----------597898738998848
Q ss_pred EEEEECCCCCEEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEE
Q ss_conf 99999469999999948990999957899986422246578999866777788954479997657667999961320012
Q 001814 435 QDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQTLSSQGGDPYLFPVLSLPWWCTSSGISEQQCVLPPPPVTLSVVS 514 (1010)
Q Consensus 435 ~sIaFSpDs~~LAssS~dGTVhIw~I~~~gg~~~~~~H~~~~~~~~~~p~~~lpw~~~ss~~~~q~~~p~p~~~~ls~vs 514 (1010)
.+++|+||+++|++++.|++++||++........ + .+... .+|.++.+.|+..+..++.+..
T Consensus 244 ~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~---~-------~~~~~-~~~~~~~~~~~~~~~~~~~~~~------- 305 (355)
T 3vu4_A 244 VDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKR---H-------ALKGW-INMKYFQSEWSLCNFKLSVDKH------- 305 (355)
T ss_dssp EEEEECTTSCEEEEEETTCEEEEEESSCCSCCCS---E-------ETTTT-EECCCCCCSSCSEEEECCCCTT-------
T ss_pred EEEEECCCCCEEEEEECCCEEEEEECCCCCCCCC---C-------CCCCE-EECCCCCCCCCEEEEEECCCCC-------
T ss_conf 9999879999999998999799998668877554---4-------21224-5023114664126998116788-------
Q ss_pred EEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEEECCCCCEEEEECCCCC
Q ss_conf 55426886543334332135686445543053111367455555334556764619999578529999423489
Q 001814 515 RIKYSSFGWLNTVSNASASSMGKVFVPSGAVAAVFHNSIAHSSQHVNSRTNSLEHLLVYTPSGYVVQHELLPSI 588 (1010)
Q Consensus 515 rIk~~~~gw~~~v~~a~s~at~~~~~ps~~va~~F~~~~~~~~~~~~s~~~~~~~LlV~s~~G~l~~Y~L~p~~ 588 (1010)
+...+.++-..+ ..|++.+.||.+..|++.+..
T Consensus 306 --------------------------~~~~~~a~~~d~---------------~~l~~~~~dg~~~~~~~~~~~ 338 (355)
T 3vu4_A 306 --------------------------VRGCKIAWISES---------------SLVVVWPHTRMIETFKVVFDD 338 (355)
T ss_dssp --------------------------CCCCEEEESSSS---------------EEEEEETTTTEEEEEEEEEET
T ss_pred --------------------------CCCEEEEEECCC---------------CEEEEEECCCEEEEEEEECCC
T ss_conf --------------------------995199996899---------------899999689869999987299
No 2
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=1.00 E-value=1 Score=213.58 Aligned_cols=294 Identities=13% Similarity=0.101 Sum_probs=204.3
Q ss_pred CCCCCCCEEEEEEEECCCCCCCCCEEEEEEECCC-EEEEECCCCCCCEEEEEECCCCEEEEEEECCCCCCCCCCCCCCCC
Q ss_conf 8799886899997322579988881999990483-899974588960476111067789999915898787888855567
Q 001814 52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLH 130 (1010)
Q Consensus 52 ~~~~kd~V~wa~Fd~le~~~~~~~~vLllGy~~G-iqVWDl~~~g~v~ellS~hdGpV~~l~ilP~P~~s~~~D~F~~sr 130 (1010)
..+|++.|..+.|.. +..+|+.|..+| ++|||++ .+++...+..|.++|..+.+.|++
T Consensus 104 l~gh~~~V~~~~~~p-------~~~~l~s~s~Dg~i~vwd~~-~~~~~~~l~~h~~~V~~v~~~~~~------------- 162 (410)
T 1vyh_C 104 LSGHRSPVTRVIFHP-------VFSVMVSASEDATIKVWDYE-TGDFERTLKGHTDSVQDISFDHSG------------- 162 (410)
T ss_dssp EECCSSCEEEEEECS-------SSSEEEEEESSSCEEEEETT-TCCCCEEECCCSSCEEEEEECTTS-------------
T ss_pred ECCCCCCEEEEEECC-------CCCEEEEEECCCEEEEEECC-CCCEEEEEECCCCCEEEEEECCCC-------------
T ss_conf 616677689999969-------99989999389859999899-993778881667868789985999-------------
Q ss_pred CEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEEEECC-CCEEEEEECC--CEEEE
Q ss_conf 68999966788878999887776654458767789987788987999868999099999279-9689999758--75999
Q 001814 131 PFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR-SSVCMVRCSP--RIVAV 207 (1010)
Q Consensus 131 pLLAvV~gd~~~~s~~~q~~~~~~~vr~G~~d~~~~~~~~sp~tVrIWDlksge~V~tLkf~-S~V~sI~~s~--~iLAV 207 (1010)
.+|+..+. +++|++||+.+++++.++..+ ..|.++.+++ +.|++
T Consensus 163 ~~l~sgs~---------------------------------D~~i~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~l~s 209 (410)
T 1vyh_C 163 KLLASCSA---------------------------------DMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVS 209 (410)
T ss_dssp SEEEEEET---------------------------------TSCCCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEE
T ss_pred CEEEEEEC---------------------------------CCEEEEEECCCCCEEEEECCCCCCEEEEEEECCCCEEEE
T ss_conf 99999918---------------------------------981999958998266998289997789999679999999
Q ss_pred -EECCEEEEEECCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCEEECC--CEEEECC--CCEEECCCCCC-CCCC---CC
Q ss_conf -94992999978999524899305995456787534334754069831--3699706--97043168865-7776---78
Q 001814 208 -GLATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP--RWLAYAS--NTLLLSNSGRL-SPQN---LT 278 (1010)
Q Consensus 208 -sl~~~I~IfDl~Tle~l~tL~t~psp~~~~~~~~~inv~~gpiAlgp--RwLAYas--~~~~iwd~G~v-s~q~---lt 278 (1010)
+.+..|++||+.+.+...++..+..+ ...+++.+ ++|+.++ ..+.+|+.... ..+. ..
T Consensus 210 ~s~D~~i~~wd~~~~~~~~~~~~h~~~-------------v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~ 276 (410)
T 1vyh_C 210 ASRDKTIKMWEVQTGYCVKTFTGHREW-------------VRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHR 276 (410)
T ss_dssp EETTSEEEEEETTTCCEEEEEECCSSC-------------EEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCS
T ss_pred EECCCEEEEEECCCCCEEEEEECCCCC-------------EEEEEECCCCCEEEEECCCCEEEEEECCCCCEEEEECCCC
T ss_conf 968996999989999489999278862-------------8999998999999999189909999898974366733787
Q ss_pred CCCCCCCCCCCCCCEEEEEEHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCC
Q ss_conf 88888985899993078740112265521442000122123258998888658975544643420247997199998898
Q 001814 279 PSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVT 358 (1010)
Q Consensus 279 ~pv~S~stSps~gslVa~~A~dssk~la~Gi~KtLs~y~~~l~p~gs~s~~s~s~~~k~~~~~~~sgs~dG~V~VwDl~s 358 (1010)
.++.+..++|...... +. ...+...... .. .+..+++++.||.|++||+.+
T Consensus 277 ~~v~~~~~~~~~~~~~------------------~~------~~~~~~~~~~----~~-~g~~l~sgs~D~~i~iwd~~~ 327 (410)
T 1vyh_C 277 HVVECISWAPESSYSS------------------IS------EATGSETKKS----GK-PGPFLLSGSRDKTIKMWDVST 327 (410)
T ss_dssp SCEEEEEECCSCGGGG------------------GG------GCCSCC------------CCEEEEEETTSEEEEEETTT
T ss_pred CEEEEEEECCCCCCCC------------------HH------HHCCCCCCCC----CC-CCCEEEEEECCCEEEEEECCC
T ss_conf 4589999858655431------------------01------2125555566----78-888999993898499998899
Q ss_pred CCEEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCEEEEE
Q ss_conf 92888801388885999998999999999759996999957888655899988544688610899995265455199999
Q 001814 359 RAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDIC 438 (1010)
Q Consensus 359 ~~~i~~l~aHtspIsaLaFSPdGtlLATAS~dGt~IrVfdI~p~~~~~~sG~~~~~~~ss~~~Ly~L~RG~t~a~I~sIa 438 (1010)
+..+..+.+|..+|.+++|+|+|++|++++.+|+ |+|||+.. + ..+..+. + +...|.+++
T Consensus 328 ~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~-i~vwd~~~-------~----------~~~~~~~-~-h~~~v~~l~ 387 (410)
T 1vyh_C 328 GMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKT-LRVWDYKN-------K----------RCMKTLN-A-HEHFVTSLD 387 (410)
T ss_dssp TEEEEEEECCSSCEEEEEECSSSSCEEEEETTTE-EEEECCTT-------S----------CCCEEEE-C-CSSCEEEEE
T ss_pred CCEEEEEECCCCCEEEEEECCCCCEEEEEECCCE-EEEEECCC-------C----------CEEEEEC-C-CCCCEEEEE
T ss_conf 9669999778885899999499899999959792-99998999-------9----------0689984-7-778689999
Q ss_pred ECCCCCEEEEEECCCEEEEEECC
Q ss_conf 94699999999489909999578
Q 001814 439 FSHYSQWIAIVSSKGTCHVFVLS 461 (1010)
Q Consensus 439 FSpDs~~LAssS~dGTVhIw~I~ 461 (1010)
|+|++.+|++++.||+|+||++.
T Consensus 388 ~~~~~~~l~sgs~D~~i~vW~~r 410 (410)
T 1vyh_C 388 FHKTAPYVVTGSVDQTVKVWECR 410 (410)
T ss_dssp ECSSSSCEEEEETTSEEEEEC--
T ss_pred ECCCCCEEEEEECCCCEEEEECC
T ss_conf 82899999999279948997379
No 3
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=1.00 E-value=1 Score=206.26 Aligned_cols=285 Identities=12% Similarity=0.150 Sum_probs=199.2
Q ss_pred CCCCCCCCCEEEEEEEECCCCCCCCCEEEEEEECCC-EEEEECCCCC-CCEEEEEECCCCEEEEEEECCCCCCCCCCCCC
Q ss_conf 888799886899997322579988881999990483-8999745889-60476111067789999915898787888855
Q 001814 50 NASEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDAS-NFNELVSKRDGPVSFLQMQPFPVKDDGCEGFR 127 (1010)
Q Consensus 50 ~~~~~~kd~V~wa~Fd~le~~~~~~~~vLllGy~~G-iqVWDl~~~g-~v~ellS~hdGpV~~l~ilP~P~~s~~~D~F~ 127 (1010)
....+|.+.|..+.|.... ..+..+|+.|..+| ++||++.... .....+..|.+.|..+.+.|+.
T Consensus 26 ~~~~~H~~~V~~v~~~~~~---~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~---------- 92 (321)
T 3ow8_A 26 KQEQAHDDAIWSVAWGTNK---KENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTL---------- 92 (321)
T ss_dssp EETTSSSSCEEEEEEC----------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSS----------
T ss_pred EECCCCCCCEEEEEEECCC---CCCCCEEEEECCCCCEEEEECCCCCEEEEEEECCCCCCEEEEEECCCC----------
T ss_conf 5215688967999982488---888888999849998999889899743666005677888999988999----------
Q ss_pred CCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEEEECC-CCEEEEEECC--CE
Q ss_conf 56768999966788878999887776654458767789987788987999868999099999279-9689999758--75
Q 001814 128 KLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR-SSVCMVRCSP--RI 204 (1010)
Q Consensus 128 ~srpLLAvV~gd~~~~s~~~q~~~~~~~vr~G~~d~~~~~~~~sp~tVrIWDlksge~V~tLkf~-S~V~sI~~s~--~i 204 (1010)
++++..+ .+++|++||+.+++.+..+..+ ..+..+.+++ ++
T Consensus 93 ---~~l~s~s---------------------------------~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~ 136 (321)
T 3ow8_A 93 ---PIAASSS---------------------------------LDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQY 136 (321)
T ss_dssp ---SEEEEEE---------------------------------TTSEEEEEETTTTEEEEEEECCTTCCCCEEECTTSSE
T ss_pred ---CEEEEEE---------------------------------CCCCEEEEECCCCCEEEEEECCCCCEEEEEECCCCCE
T ss_conf ---9899993---------------------------------7980999978999798999379856799999999998
Q ss_pred EEEEE-CCEEEEEECCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCEEECC--CEEEECCC--CEEECCCCCCCCCCCCC
Q ss_conf 99994-992999978999524899305995456787534334754069831--36997069--70431688657776788
Q 001814 205 VAVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP--RWLAYASN--TLLLSNSGRLSPQNLTP 279 (1010)
Q Consensus 205 LAVsl-~~~I~IfDl~Tle~l~tL~t~psp~~~~~~~~~inv~~gpiAlgp--RwLAYas~--~~~iwd~G~vs~q~lt~ 279 (1010)
|+++. +..|++||+.+.+..+++..+... ...++++| ++||.++. .+.+|+...
T Consensus 137 l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~-------------v~~~~~spdg~~lasg~~dg~i~iwd~~~-------- 195 (321)
T 3ow8_A 137 LATGTHVGKVNIFGVESGKKEYSLDTRGKF-------------ILSIAYSPDGKYLASGAIDGIINIFDIAT-------- 195 (321)
T ss_dssp EEEECTTSEEEEEETTTCSEEEEEECSSSC-------------EEEEEECTTSSEEEEEETTSCEEEEETTT--------
T ss_pred EEEECCCCCEEEEECCCCCEEEEECCCCCE-------------EEEEEECCCCCEEEEECCCCEEEEEECCC--------
T ss_conf 999838991999986799466774389942-------------99999989999999992898399999999--------
Q ss_pred CCCCCCCCCCCCCEEEEEEHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCC
Q ss_conf 88889858999930787401122655214420001221232589988886589755446434202479971999988989
Q 001814 280 SGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTR 359 (1010)
Q Consensus 280 pv~S~stSps~gslVa~~A~dssk~la~Gi~KtLs~y~~~l~p~gs~s~~s~s~~~k~~~~~~~sgs~dG~V~VwDl~s~ 359 (1010)
+.++ +++.++. .....+.+++..+ .+++++.+|.|+|||+...
T Consensus 196 -----------~~~~----------------~~~~~h~------~~v~~l~~spd~~----~l~s~s~dg~i~iwd~~~~ 238 (321)
T 3ow8_A 196 -----------GKLL----------------HTLEGHA------MPIRSLTFSPDSQ----LLVTASDDGYIKIYDVQHA 238 (321)
T ss_dssp -----------TEEE----------------EEECCCS------SCCCEEEECTTSC----EEEEECTTSCEEEEETTTC
T ss_pred -----------CCEE----------------EEECCCC------CCEEEEEECCCCC----EEEEECCCCEEEEEECCCC
T ss_conf -----------9099----------------9980258------9601899948999----8999909980999878996
Q ss_pred CEEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCEEEEEE
Q ss_conf 28888013888859999989999999997599969999578886558999885446886108999952654551999999
Q 001814 360 AIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICF 439 (1010)
Q Consensus 360 ~~i~~l~aHtspIsaLaFSPdGtlLATAS~dGt~IrVfdI~p~~~~~~sG~~~~~~~ss~~~Ly~L~RG~t~a~I~sIaF 439 (1010)
..+..+.+|..+|.+++|+|+|++|++++.+|+ |+|||+.. + ..+..+. + +...|++++|
T Consensus 239 ~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~-v~iwd~~~-------~----------~~~~~~~-~-h~~~v~~v~~ 298 (321)
T 3ow8_A 239 NLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKS-VKVWDVGT-------R----------TCVHTFF-D-HQDQVWGVKY 298 (321)
T ss_dssp CEEEEECCCSSCEEEEEECTTSSEEEEEETTSC-EEEEETTT-------T----------EEEEEEC-C-CSSCEEEEEE
T ss_pred CEEEEECCCCCCEEEEEECCCCCEEEEEECCCC-EEEEECCC-------C----------EEEEEEC-C-CCCCEEEEEE
T ss_conf 325898688882689999799998999818980-99994999-------8----------8888983-7-8773899999
Q ss_pred CCCCCEEEEEECCCEEEEEECC
Q ss_conf 4699999999489909999578
Q 001814 440 SHYSQWIAIVSSKGTCHVFVLS 461 (1010)
Q Consensus 440 SpDs~~LAssS~dGTVhIw~I~ 461 (1010)
+||+++|++++.||+|+||++.
T Consensus 299 s~~g~~l~s~~~d~~i~vwd~p 320 (321)
T 3ow8_A 299 NGNGSKIVSVGDDQEIHIYDCP 320 (321)
T ss_dssp CTTSSEEEEEETTCCEEEEECC
T ss_pred CCCCCEEEEEECCCEEEEEECC
T ss_conf 8999999997589808999577
No 4
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=1.00 E-value=1 Score=205.03 Aligned_cols=100 Identities=17% Similarity=0.251 Sum_probs=51.5
Q ss_pred CCCCCCEEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCCEEEE
Q ss_conf 24799719999889892888801388885999998999999999759996999957888655899988544688610899
Q 001814 344 DMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLY 423 (1010)
Q Consensus 344 sgs~dG~V~VwDl~s~~~i~~l~aHtspIsaLaFSPdGtlLATAS~dGt~IrVfdI~p~~~~~~sG~~~~~~~ss~~~Ly 423 (1010)
+++.|+.|++||....+.+..|.+|..+|.+++|+|+|++|||++.|++ |+||++.. | ..+.
T Consensus 165 s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~-i~lwd~~~-------g----------~~~~ 226 (611)
T 1nr0_A 165 SGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGT-IVLYNGVD-------G----------TKTG 226 (611)
T ss_dssp EEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSC-EEEEETTT-------C----------CEEE
T ss_pred EEECCCEEEEEECCCCEEEEEECCCCCCEEEEEECCCCCEEEEEECCCC-EEEEECCC-------C----------CEEE
T ss_conf 9928980999979997576652002571699999799998999989991-99988999-------8----------2866
Q ss_pred EEEC------CCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCC
Q ss_conf 9952------65455199999946999999994899099995789
Q 001814 424 KLHR------GITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSP 462 (1010)
Q Consensus 424 ~L~R------G~t~a~I~sIaFSpDs~~LAssS~dGTVhIw~I~~ 462 (1010)
.+.. + +...|.+++|+||+++|++++.|++++||++..
T Consensus 227 ~~~~~~~~~~~-h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~ 270 (611)
T 1nr0_A 227 VFEDDSLKNVA-HSGSVFGLTWSPDGTKIASASADKTIKIWNVAT 270 (611)
T ss_dssp ECBCTTSSSCS-SSSCEEEEEECTTSSEEEEEETTSEEEEEETTT
T ss_pred EECCCCCCCCC-CCCCEEEEEECCCCCEEEEEECCCEEEEEECCC
T ss_conf 51366432356-678789999979999999990898099996888
No 5
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=1.00 E-value=1 Score=202.23 Aligned_cols=286 Identities=12% Similarity=0.051 Sum_probs=192.6
Q ss_pred CCCCCCCEEEEEEEECCCCCCCCCEEEEEEEC------CC-EEEEECCCCCC---CEEEEEECCCCEEEEEEECCCCCCC
Q ss_conf 87998868999973225799888819999904------83-89997458896---0476111067789999915898787
Q 001814 52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQ------NG-FQVLDVEDASN---FNELVSKRDGPVSFLQMQPFPVKDD 121 (1010)
Q Consensus 52 ~~~~kd~V~wa~Fd~le~~~~~~~~vLllGy~------~G-iqVWDl~~~g~---v~ellS~hdGpV~~l~ilP~P~~s~ 121 (1010)
...|...|..+.|. +++++|+.|.. +| +++|+...... .......|++.|..++|.|+.
T Consensus 38 p~~H~~~V~~v~fS-------pDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~---- 106 (357)
T 4g56_B 38 PACMEVQIGAVRYR-------RDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEK---- 106 (357)
T ss_dssp --CCCSEEEEEEEC-------SSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTT----
T ss_pred CCCCCCCEEEEEEC-------CCCCEEEEECCCCCCCCCCEEEEEECCCCCCCEEEECCCCCCCCCEEEEEECCCC----
T ss_conf 44210788999998-------9999999982898713268699978999871405850247887987999996899----
Q ss_pred CCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEEE-----ECCCCEE
Q ss_conf 88885556768999966788878999887776654458767789987788987999868999099999-----2799689
Q 001814 122 GCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVL-----RFRSSVC 196 (1010)
Q Consensus 122 ~~D~F~~srpLLAvV~gd~~~~s~~~q~~~~~~~vr~G~~d~~~~~~~~sp~tVrIWDlksge~V~tL-----kf~S~V~ 196 (1010)
.+ ++.+. +++|+|||+.+++.+... .+...|.
T Consensus 107 ---------~~-l~~s~---------------------------------dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~ 143 (357)
T 4g56_B 107 ---------GI-LVASD---------------------------------SGAVELWEILEKESLLVNKFAKYEHDDIVK 143 (357)
T ss_dssp ---------EE-EEEET---------------------------------TSCEEEC--------CCCCEEECCCSSCEE
T ss_pred ---------CE-EEEEC---------------------------------CCEEEEEECCCCCEEEEEEECCCCCCCCEE
T ss_conf ---------89-99989---------------------------------998999344566404787421378889889
Q ss_pred EEEECC--CEEEEEE-CCEEEEEECCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCEEECC---CEEEECC--CCEEECC
Q ss_conf 999758--7599994-992999978999524899305995456787534334754069831---3699706--9704316
Q 001814 197 MVRCSP--RIVAVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP---RWLAYAS--NTLLLSN 268 (1010)
Q Consensus 197 sI~~s~--~iLAVsl-~~~I~IfDl~Tle~l~tL~t~psp~~~~~~~~~inv~~gpiAlgp---RwLAYas--~~~~iwd 268 (1010)
+|+|++ ++|+++. +..|++||+.+.+....+..+..+ ...+++++ ..++..+ ..+.+|+
T Consensus 144 ~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~-------------v~~v~~s~~~~~~~~s~~~dg~v~~wd 210 (357)
T 4g56_B 144 TLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSE-------------VNCVAACPGKDTIFLSCGEDGRILLWD 210 (357)
T ss_dssp EEEECSSSSEEEEEETTSCEEEEETTTTEEEEEECCCSSC-------------EEEEEECTTCSSCEEEEETTSCEEECC
T ss_pred EEEECCCCCEEEEEECCCEEEEEECCCCCEEEEECCCCCC-------------EEEEEECCCCCCEEEEECCCCCEEEEE
T ss_conf 9999799899999969893999989999599998277897-------------889998368872266550578638878
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCEEEEEEHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 88657776788888898589999307874011226552144200012212325899888865897554464342024799
Q 001814 269 SGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNA 348 (1010)
Q Consensus 269 ~G~vs~q~lt~pv~S~stSps~gslVa~~A~dssk~la~Gi~KtLs~y~~~l~p~gs~s~~s~s~~~k~~~~~~~sgs~d 348 (1010)
.... +.... ...... ... ...+.++|... ..++.++.+
T Consensus 211 ~~~~--~~~~~----~~~~~~-~~~--------------------------------v~~v~~sp~~~---~~la~g~~d 248 (357)
T 4g56_B 211 TRKP--KPATR----IDFCAS-DTI--------------------------------PTSVTWHPEKD---DTFACGDET 248 (357)
T ss_dssp TTSS--SCBCB----CCCTTC-CSC--------------------------------EEEEEECTTST---TEEEEEESS
T ss_pred CCCC--CEEEE----EEECCC-CCC--------------------------------CCCHHHHHCCC---CEEEEEECC
T ss_conf 8999--64012----330023-344--------------------------------42111121353---059982135
Q ss_pred CEEEEEECCCCCEEEEECCCCCCEEEEEECCCC-CEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEEEC
Q ss_conf 719999889892888801388885999998999-9999997599969999578886558999885446886108999952
Q 001814 349 GIVVVKDFVTRAIISQFKAHTSPISALCFDPSG-TLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHR 427 (1010)
Q Consensus 349 G~V~VwDl~s~~~i~~l~aHtspIsaLaFSPdG-tlLATAS~dGt~IrVfdI~p~~~~~~sG~~~~~~~ss~~~Ly~L~R 427 (1010)
+.|++||+.+++.+..+.+|..+|.+|+|+|+| ++||+++.+|+ |+|||+.. + +.+ .+.
T Consensus 249 ~~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~-i~iwd~~~-------~----------~~~-~~~- 308 (357)
T 4g56_B 249 GNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCT-VAVLDADF-------S----------EVF-RDL- 308 (357)
T ss_dssp SCEEEEESSCGGGCEEECCCSSCEEEEEECSSSSCCEEEEETTSC-EEEECTTS-------C----------EEE-EEC-
T ss_pred CCEEEEECCCCCEEEEEECCCEEEEEEEECCCCCCEEEEEECCCE-EEEEECCC-------C----------CEE-EEC-
T ss_conf 420689899995828993553138779976899989999958997-99998999-------9----------586-978-
Q ss_pred CCCCCCEEEEEECC-CCCEEEEEECCCEEEEEECCCCCCCC
Q ss_conf 65455199999946-99999999489909999578999864
Q 001814 428 GITSATIQDICFSH-YSQWIAIVSSKGTCHVFVLSPFGGDS 467 (1010)
Q Consensus 428 G~t~a~I~sIaFSp-Ds~~LAssS~dGTVhIw~I~~~gg~~ 467 (1010)
+ |...|++|+|+| |+++|++++.||+|+||++...+...
T Consensus 309 ~-H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~~~~~~ 348 (357)
T 4g56_B 309 S-HRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPSEGRTE 348 (357)
T ss_dssp C-CSSCEEEEEECSSSTTEEEEEETTSCEEEEECC------
T ss_pred C-CCCCEEEEEEECCCCCEEEEECCCCEEEEEECCCCCCCC
T ss_conf 8-999889999958999999999189959999779998433
No 6
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=1.00 E-value=1 Score=199.97 Aligned_cols=269 Identities=17% Similarity=0.175 Sum_probs=162.0
Q ss_pred CCCCCCCEEEEEEEECCCCCCCCCEEEEEEECCC-EEEEECCCCCCCEEEEEECCCCEEEEEEECCCCCCCCCCCCCCCC
Q ss_conf 8799886899997322579988881999990483-899974588960476111067789999915898787888855567
Q 001814 52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLH 130 (1010)
Q Consensus 52 ~~~~kd~V~wa~Fd~le~~~~~~~~vLllGy~~G-iqVWDl~~~g~v~ellS~hdGpV~~l~ilP~P~~s~~~D~F~~sr 130 (1010)
.++|++.|..+.|.. ++++|+.|..+| ++|||. .+++...+..|.++|..++|.|+.
T Consensus 12 L~GH~~~V~~~a~sp-------dg~~las~~~d~~v~iWd~--~~~~~~~l~gh~~~V~~l~fspdg------------- 69 (577)
T 2ymu_A 12 LEAHSSSVRGVAFSP-------DGQTIASASDDKTVKLWNR--NGQLLQTLTGHSSSVWGVAFSPDG------------- 69 (577)
T ss_dssp ECCCSSCEEEEEECT-------TSSCEEEEETTSEEEEECT--TSCEEEEEECCSSCEEEEEECTTS-------------
T ss_pred ECCCCCCEEEEEECC-------CCCEEEEEECCCEEEEEEC--CCCEEEEEECCCCCEEEEEECCCC-------------
T ss_conf 878998579999989-------9899999938998999979--997899996898998999998999-------------
Q ss_pred CEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEEEECC-CCEEEEEECC--CEEEE
Q ss_conf 68999966788878999887776654458767789987788987999868999099999279-9689999758--75999
Q 001814 131 PFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR-SSVCMVRCSP--RIVAV 207 (1010)
Q Consensus 131 pLLAvV~gd~~~~s~~~q~~~~~~~vr~G~~d~~~~~~~~sp~tVrIWDlksge~V~tLkf~-S~V~sI~~s~--~iLAV 207 (1010)
.+||..+. +++|++||+ +++.+.++..+ ..|.+++|++ +.|++
T Consensus 70 ~~las~~~---------------------------------d~~i~vWd~-~~~~~~~~~~~~~~v~~~~~s~d~~~l~~ 115 (577)
T 2ymu_A 70 QTIASASD---------------------------------DKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIAS 115 (577)
T ss_dssp SEEEEEET---------------------------------TSCEEEEET-TSCEEEEECCCSSCEEEEEECTTSSEEEE
T ss_pred CEEEEEEC---------------------------------CCEEEEEEC-CCCEEEEEECCCCCEEEEEECCCCCEEEE
T ss_conf 99999969---------------------------------897999989-99789999789998899999899998999
Q ss_pred EE-CCEEEEEECCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCEEECC--CEEEECCC--CEEECCCCCCCC---CCCCC
Q ss_conf 94-992999978999524899305995456787534334754069831--36997069--704316886577---76788
Q 001814 208 GL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP--RWLAYASN--TLLLSNSGRLSP---QNLTP 279 (1010)
Q Consensus 208 sl-~~~I~IfDl~Tle~l~tL~t~psp~~~~~~~~~inv~~gpiAlgp--RwLAYas~--~~~iwd~G~vs~---q~lt~ 279 (1010)
+. +..+++|+..... ......+..+ ...+++.+ +.++.... ...+|....... .....
T Consensus 116 ~~~d~~~~~~~~~~~~-~~~~~~~~~~-------------v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (577)
T 2ymu_A 116 ASDDKTVKLWNRNGQL-LQTLTGHSSS-------------VWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSS 181 (577)
T ss_dssp EETTSCEEEEETTCCE-EEEECCCSSC-------------EEEEEECTTSSCEEEEETTSEEEEECTTSCEEEEEECCSS
T ss_pred ECCCCCEEECCCCCCE-EEECCCCCCC-------------EEEEEEECCCCCCEECCCCCCEECCCCCEEEEEECCCCCC
T ss_conf 8079833520235520-0110477774-------------3555420377632002555310000000000000268776
Q ss_pred CCCCCCCCCCCCCEEEEEEHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCC
Q ss_conf 88889858999930787401122655214420001221232589988886589755446434202479971999988989
Q 001814 280 SGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTR 359 (1010)
Q Consensus 280 pv~S~stSps~gslVa~~A~dssk~la~Gi~KtLs~y~~~l~p~gs~s~~s~s~~~k~~~~~~~sgs~dG~V~VwDl~s~ 359 (1010)
.+....++|++. .++.++.+|.|++||. ++
T Consensus 182 ~v~~~~~~~~~~-------------------------------------------------~l~~~~~d~~v~~w~~-~~ 211 (577)
T 2ymu_A 182 SVWGVAFSPDGQ-------------------------------------------------TIASASDDKTVKLWNR-NG 211 (577)
T ss_dssp CEEEEEECTTSS-------------------------------------------------CEEEEETTSEEEEECT-TS
T ss_pred CEEEEEECCCCC-------------------------------------------------EEEEECCCCEEEEEEC-CC
T ss_conf 356654169977-------------------------------------------------8999859998999949-99
Q ss_pred CEEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCEEEEEE
Q ss_conf 28888013888859999989999999997599969999578886558999885446886108999952654551999999
Q 001814 360 AIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICF 439 (1010)
Q Consensus 360 ~~i~~l~aHtspIsaLaFSPdGtlLATAS~dGt~IrVfdI~p~~~~~~sG~~~~~~~ss~~~Ly~L~RG~t~a~I~sIaF 439 (1010)
+.+..+.+|..+|.+++|+|+|.+|++++.++. |++|+.. + +.+..+ .+ +...|.+++|
T Consensus 212 ~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~-i~~w~~~--------~----------~~~~~~-~~-~~~~v~~v~~ 270 (577)
T 2ymu_A 212 QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKT-VKLWNRN--------G----------QLLQTL-TG-HSSSVNGVAF 270 (577)
T ss_dssp CEEEEEECCSSCEEEEEECTTSSCEEEEETTSC-EEEECTT--------S----------CEEEEE-CC-CSSCEEEEEE
T ss_pred CEEEEEECCCCCEEEEEECCCCCEEEEEECCCE-EEEEECC--------C----------CEEEEE-EC-CCCCEEEEEE
T ss_conf 689999468898899999799999999918998-9999599--------9----------799998-06-8898799999
Q ss_pred CCCCCEEEEEECCCEEEEEECC
Q ss_conf 4699999999489909999578
Q 001814 440 SHYSQWIAIVSSKGTCHVFVLS 461 (1010)
Q Consensus 440 SpDs~~LAssS~dGTVhIw~I~ 461 (1010)
+||+++|++++.++++++|+.+
T Consensus 271 ~~d~~~l~~~~~d~~i~~w~~~ 292 (577)
T 2ymu_A 271 RPDGQTIASASDDKTVKLWNRN 292 (577)
T ss_dssp CTTSSEEEEEETTSCEEEEETT
T ss_pred CCCCCEEEEEECCCEEEEEECC
T ss_conf 6899999999599979999489
No 7
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=1.00 E-value=1 Score=198.93 Aligned_cols=280 Identities=15% Similarity=0.091 Sum_probs=175.6
Q ss_pred CCCCCCEEEEEEEECCCCCCCCCEEEEEEECCCEEEEECCC----------CCCCEEEEEECCCCEEEEEEECCCCCCCC
Q ss_conf 79988689999732257998888199999048389997458----------89604761110677899999158987878
Q 001814 53 EDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNGFQVLDVED----------ASNFNELVSKRDGPVSFLQMQPFPVKDDG 122 (1010)
Q Consensus 53 ~~~kd~V~wa~Fd~le~~~~~~~~vLllGy~~GiqVWDl~~----------~g~v~ellS~hdGpV~~l~ilP~P~~s~~ 122 (1010)
..+...|..+.|.. ++++|+.+.+..+++||... ..........++.+|..++|.|+.
T Consensus 27 ~~~~~~v~~~~fs~-------dG~~l~~~sd~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~----- 94 (344)
T 4gqb_B 27 ACMERQLEAARYRS-------DGALLLGASSLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGER----- 94 (344)
T ss_dssp SSCCSEEEEEEECT-------TSCEEEEEECCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTT-----
T ss_pred CCCCCCEEEEEECC-------CCCEEEEEECCCEEEEECEEEEECCCCCCCCCCEEEEEECCCCCEEEEEEECCC-----
T ss_conf 45558888999989-------999999990895687623056503655567765466660367987899992998-----
Q ss_pred CCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEEEE-----CCCCEEE
Q ss_conf 88855567689999667888789998877766544587677899877889879998689990999992-----7996899
Q 001814 123 CEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLR-----FRSSVCM 197 (1010)
Q Consensus 123 ~D~F~~srpLLAvV~gd~~~~s~~~q~~~~~~~vr~G~~d~~~~~~~~sp~tVrIWDlksge~V~tLk-----f~S~V~s 197 (1010)
.|++.+. +++|+|||+.+++.+..++ +...|.+
T Consensus 95 ---------~l~~~s~---------------------------------dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~ 132 (344)
T 4gqb_B 95 ---------GILVASD---------------------------------SGAVELWELDENETLIVSKFCKYEHDDIVST 132 (344)
T ss_dssp ---------EEEEEET---------------------------------TSEEEEEEECTTSSCEEEEEEEECCSSCEEE
T ss_pred ---------EEEEEEC---------------------------------CCEEEEEECCCCCCEEEEECCCCCCCCCEEE
T ss_conf ---------2999989---------------------------------7989999653887435860134678997899
Q ss_pred EEECC--CEEEEEE-CCEEEEEECCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCEEECC---CEEEECC--CCEEECCC
Q ss_conf 99758--7599994-992999978999524899305995456787534334754069831---3699706--97043168
Q 001814 198 VRCSP--RIVAVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP---RWLAYAS--NTLLLSNS 269 (1010)
Q Consensus 198 I~~s~--~iLAVsl-~~~I~IfDl~Tle~l~tL~t~psp~~~~~~~~~inv~~gpiAlgp---RwLAYas--~~~~iwd~ 269 (1010)
|+|++ ++|+++. +..|++||+.+.+.+.++..|..+ ...+++.+ +.++.++ ..+.+|+.
T Consensus 133 v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~-------------V~~~~~~~~~~~~l~s~s~D~~v~iwd~ 199 (344)
T 4gqb_B 133 VSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQ-------------VTCVAASPHKDSVFLSCSEDNRILLWDT 199 (344)
T ss_dssp EEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSC-------------EEEEEECSSCTTEEEEEETTSCEEEEET
T ss_pred EEECCCCCEEEEEECCCEEEEEECCCCCEEEEECCCCCC-------------EEEEEECCCCCCCEEEECCCCCCCCCCC
T ss_conf 999899899999949893999999999699997576885-------------5788865899974011034435510234
Q ss_pred CCCC-CCCCCCCCCCCCCCCCCCCEEEEEEHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 8657-776788888898589999307874011226552144200012212325899888865897554464342024799
Q 001814 270 GRLS-PQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNA 348 (1010)
Q Consensus 270 G~vs-~q~lt~pv~S~stSps~gslVa~~A~dssk~la~Gi~KtLs~y~~~l~p~gs~s~~s~s~~~k~~~~~~~sgs~d 348 (1010)
.... ...+... ..+.. ...+.+++.. ...++.++.+
T Consensus 200 ~~~~~~~~~~~~--------~~~~~--------------------------------~~~~~~~p~~---~~~l~sg~~d 236 (344)
T 4gqb_B 200 RCPKPASQIGCS--------APGYL--------------------------------PTSLAWHPQQ---SEVFVFGDEN 236 (344)
T ss_dssp TSSSCEEECC------------CCC--------------------------------EEEEEECSSC---TTEEEEEETT
T ss_pred CCCCEEEEEECC--------EEECC--------------------------------CEEEEECCCC---CCCEEEECCC
T ss_conf 455200111010--------00012--------------------------------1235661799---9605886158
Q ss_pred CEEEEEECCCCCEEEEECCCCCCEEEEEECCCC-CEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEEEC
Q ss_conf 719999889892888801388885999998999-9999997599969999578886558999885446886108999952
Q 001814 349 GIVVVKDFVTRAIISQFKAHTSPISALCFDPSG-TLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHR 427 (1010)
Q Consensus 349 G~V~VwDl~s~~~i~~l~aHtspIsaLaFSPdG-tlLATAS~dGt~IrVfdI~p~~~~~~sG~~~~~~~ss~~~Ly~L~R 427 (1010)
|.|+|||+.+++.+..+.+|..+|.+++|+|+| ++|||+|.||+ |+|||+.. + .+.++ .
T Consensus 237 g~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~-i~vwd~~~-------~-----------~~~~~-~ 296 (344)
T 4gqb_B 237 GTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCS-LAVLDSSL-------S-----------ELFRS-Q 296 (344)
T ss_dssp SEEEEEESCC--CCEEEECCSSCEEEEEECSSSSCCEEEEETTSC-EEEECTTC-------C-----------EEEEE-C
T ss_pred CCEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEEECCCE-EEEEECCC-------C-----------CEEEE-C
T ss_conf 718989899995989983788998899992699909999938994-99999999-------9-----------69997-2
Q ss_pred CCCCCCEEEEEECCCCC-EEEEEECCCEEEEEECCCC
Q ss_conf 65455199999946999-9999948990999957899
Q 001814 428 GITSATIQDICFSHYSQ-WIAIVSSKGTCHVFVLSPF 463 (1010)
Q Consensus 428 G~t~a~I~sIaFSpDs~-~LAssS~dGTVhIw~I~~~ 463 (1010)
|+ ...|++++|+||++ .|++++.||+|++|++...
T Consensus 297 ~H-~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~~ 332 (344)
T 4gqb_B 297 AH-RDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPTE 332 (344)
T ss_dssp CC-SSCEEEEEECSSSTTEEEEEETTSCEEEEECCC-
T ss_pred CC-CCCEEEEEEECCCCEEEEEECCCCEEEEEECCCC
T ss_conf 88-9977899991799969999937995999989998
No 8
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=1.00 E-value=1 Score=197.60 Aligned_cols=321 Identities=15% Similarity=0.094 Sum_probs=157.2
Q ss_pred CCCCCCCEEEEEEEECCCCCCCCCEEEEEEECCC-EEEEECCCCC-CCEEEEEECCCCEEEEEEECCCCCCCCCCCCCCC
Q ss_conf 8799886899997322579988881999990483-8999745889-6047611106778999991589878788885556
Q 001814 52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDAS-NFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKL 129 (1010)
Q Consensus 52 ~~~~kd~V~wa~Fd~le~~~~~~~~vLllGy~~G-iqVWDl~~~g-~v~ellS~hdGpV~~l~ilP~P~~s~~~D~F~~s 129 (1010)
..+|.+.|..+.|. +++++|+.|..+| ++|||+.... .+...+..|.++|..++|.|++
T Consensus 55 ~~~h~~~v~~~~~s-------pdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg------------ 115 (611)
T 1nr0_A 55 YTEHSHQTTVAKTS-------PSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSES------------ 115 (611)
T ss_dssp ECCCSSCEEEEEEC-------TTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTS------------
T ss_pred ECCCCCCEEEEEEC-------CCCCEEEEEECCCCEEEEECCCCCCEEEEEECCCCCCEEEEEECCCC------------
T ss_conf 65899865999999-------99968999948997899489898415667622557844899989999------------
Q ss_pred CCEEEEEECCCCC---------CCCCCCCCCCCCCCCCCCCCCCCCC---CCCCCCEEEEEECCCCEEEEEEECC-CCEE
Q ss_conf 7689999667888---------7899988777665445876778998---7788987999868999099999279-9689
Q 001814 130 HPFLLVVAGEDTN---------TLAPGQNRSHLGGVRDGMMDSQSGN---CVNSPTAVRFYSFQSHCYEHVLRFR-SSVC 196 (1010)
Q Consensus 130 rpLLAvV~gd~~~---------~s~~~q~~~~~~~vr~G~~d~~~~~---~~~sp~tVrIWDlksge~V~tLkf~-S~V~ 196 (1010)
.+||.++.+... +.......++...++.-.|.+.... ....+++|++||..+++++.++..+ ..|.
T Consensus 116 -~~l~~~~~~~~~~~~v~~wd~~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~ 194 (611)
T 1nr0_A 116 -KRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVH 194 (611)
T ss_dssp -CEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEE
T ss_pred -CEEEEEECCCCCEEEEEEEECCCCCCEECCCCCCCEEEEECCCCCEEEEEEECCCEEEEEECCCCEEEEEECCCCCCEE
T ss_conf -9799998997736699996389976325478898369998899982999992898099997999757665200257169
Q ss_pred EEEECC--CEEEEE-ECCEEEEEECCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCEEECC--CEEEECCC--CEEECCC
Q ss_conf 999758--759999-4992999978999524899305995456787534334754069831--36997069--7043168
Q 001814 197 MVRCSP--RIVAVG-LATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP--RWLAYASN--TLLLSNS 269 (1010)
Q Consensus 197 sI~~s~--~iLAVs-l~~~I~IfDl~Tle~l~tL~t~psp~~~~~~~~~inv~~gpiAlgp--RwLAYas~--~~~iwd~ 269 (1010)
+++|+| ++|+++ .+..|++||+.+.+...++....... . +.......++++| ++||.++. .+.+|+.
T Consensus 195 ~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~---~---~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~ 268 (611)
T 1nr0_A 195 SVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKN---V---AHSGSVFGLTWSPDGTKIASASADKTIKIWNV 268 (611)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSS---C---SSSSCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred EEEECCCCCEEEEEECCCCEEEEECCCCCEEEEECCCCCCC---C---CCCCCEEEEEECCCCCEEEEEECCCEEEEEEC
T ss_conf 99997999989999899919998899982866513664323---5---66787899999799999999908980999968
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCEEEEEEHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 86577767888888985899993078740112265521442000122123258998888658975544643420247997
Q 001814 270 GRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAG 349 (1010)
Q Consensus 270 G~vs~q~lt~pv~S~stSps~gslVa~~A~dssk~la~Gi~KtLs~y~~~l~p~gs~s~~s~s~~~k~~~~~~~sgs~dG 349 (1010)
... ..+ +++.... . .... .....+ ....++.++.+|
T Consensus 269 ~~~-------------------~~~----------------~~~~~~~-~-~~~~-~~~~~~------~~~~l~s~s~d~ 304 (611)
T 1nr0_A 269 ATL-------------------KVE----------------KTIPVGT-R-IEDQ-QLGIIW------TKQALVSISANG 304 (611)
T ss_dssp TTT-------------------EEE----------------EEEECCS-S-GGGC-EEEEEE------CSSCEEEEETTC
T ss_pred CCC-------------------CEE----------------EEECCCC-C-CCCE-EEEEEE------CCCEEEEEECCC
T ss_conf 887-------------------013----------------4404788-7-6640-689997------388799995899
Q ss_pred EEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEEECCC
Q ss_conf 19999889892888801388885999998999999999759996999957888655899988544688610899995265
Q 001814 350 IVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGI 429 (1010)
Q Consensus 350 ~V~VwDl~s~~~i~~l~aHtspIsaLaFSPdGtlLATAS~dGt~IrVfdI~p~~~~~~sG~~~~~~~ss~~~Ly~L~RG~ 429 (1010)
.+++||...+.....+.+|..+|.+++|+|+|++|++++.+|+ |++||+.. + .....+..+
T Consensus 305 ~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~-v~~Wd~~~-------~----------~~~~~~~~~- 365 (611)
T 1nr0_A 305 FINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGH-INSWDIST-------G----------ISNRVFPDV- 365 (611)
T ss_dssp CEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSC-EEEEETTT-------C----------CEEECSSCS-
T ss_pred CEEEEECCCCCCCEEECCCCCCEEEEEEECCCCEEEEEECCCC-EEEEECCC-------C----------CEEEECCCC-
T ss_conf 6899968899744698378888899999189998999958984-99997887-------9----------256321667-
Q ss_pred CCCCEEEEEECCCCCEEEEEECCCEEEEEECCC
Q ss_conf 455199999946999999994899099995789
Q 001814 430 TSATIQDICFSHYSQWIAIVSSKGTCHVFVLSP 462 (1010)
Q Consensus 430 t~a~I~sIaFSpDs~~LAssS~dGTVhIw~I~~ 462 (1010)
+...|.+++|++++ .+++++.|+++++|++..
T Consensus 366 h~~~v~~~~~s~~~-~l~s~s~d~~v~~w~~~~ 397 (611)
T 1nr0_A 366 HATMITGIKTTSKG-DLFTVSWDDHLKVVPAGG 397 (611)
T ss_dssp CSSCEEEEEECTTS-CEEEEETTTEEEEECSSS
T ss_pred CCCEEEEEEECCCC-CEEEEECCCCEEEEECCC
T ss_conf 76507899987899-699998489668954688
No 9
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=1.00 E-value=1 Score=194.09 Aligned_cols=281 Identities=14% Similarity=0.173 Sum_probs=191.1
Q ss_pred HHHCCEEEECCCCCCEEHHHHHHCCCCCCCCCC--CCCCCCCCEEEEEEEECCCCCCCCCEEEEEEECCC-EEEEECCCC
Q ss_conf 751100131158741000010000010101348--88799886899997322579988881999990483-899974588
Q 001814 18 IISSCLKTVSTNASTVASTVRSAGASVAASISN--ASEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDA 94 (1010)
Q Consensus 18 ~~s~~~~~~s~~a~~~~~~~rs~~~s~a~~i~~--~~~~~kd~V~wa~Fd~le~~~~~~~~vLllGy~~G-iqVWDl~~~ 94 (1010)
.+...+.-+-+|..++......|...++..+.. ...+|++.|..+.|.. ....+|+.|..+| ++||++...
T Consensus 342 ~~~~~~~~~~~G~~~~~~al~~a~~~~~~~l~~~~~l~~H~~~V~~v~~~~------~~~~~l~s~s~D~~i~~W~~~~~ 415 (694)
T 3dm0_A 342 AVRTAVINAASGRQTVDAALAAAQTNAAAGLVLKGTMRAHTDMVTAIATPI------DNADIIVSASRDKSIILWKLTKD 415 (694)
T ss_dssp HHHHHHHHHHHTSSCHHHHHHHHHHHHHCSSEEEEEEECCSSCEEEEECCT------TCCSEEEEEETTSEEEEEECCCS
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCHHHHCCCCCCEEEEEEECC------CCCCEEEEEECCCCEEEEECCCC
T ss_conf 999999999738978899999998744314641211046774069998669------98888999808994899975688
Q ss_pred C----CCEEEEEECCCCEEEEEEECCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 9----604761110677899999158987878888555676899996678887899988777665445876778998778
Q 001814 95 S----NFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVN 170 (1010)
Q Consensus 95 g----~v~ellS~hdGpV~~l~ilP~P~~s~~~D~F~~srpLLAvV~gd~~~~s~~~q~~~~~~~vr~G~~d~~~~~~~~ 170 (1010)
+ .....+..|.+.|..+.+.|++ .+|+..+
T Consensus 416 ~~~~~~~~~~~~~h~~~v~~v~~s~~g-------------~~l~sgs--------------------------------- 449 (694)
T 3dm0_A 416 DKAYGVAQRRLTGHSHFVEDVVLSSDG-------------QFALSGS--------------------------------- 449 (694)
T ss_dssp TTCSCEEEEEEECCSSCEEEEEECTTS-------------SEEEEEE---------------------------------
T ss_pred CCCCCCCCCEECCCCCCEEEEEECCCC-------------CEEEEEE---------------------------------
T ss_conf 755553332425888847999997999-------------9999980---------------------------------
Q ss_pred CCCEEEEEECCCCEEEEEEECC-CCEEEEEECC--CEEEE-EECCEEEEEECCCCCEEEEEEECCCCCCCCCCCCCCCCC
Q ss_conf 8987999868999099999279-9689999758--75999-949929999789995248993059954567875343347
Q 001814 171 SPTAVRFYSFQSHCYEHVLRFR-SSVCMVRCSP--RIVAV-GLATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVG 246 (1010)
Q Consensus 171 sp~tVrIWDlksge~V~tLkf~-S~V~sI~~s~--~iLAV-sl~~~I~IfDl~Tle~l~tL~t~psp~~~~~~~~~inv~ 246 (1010)
.+++|++||+.++..+..+..+ ..|.++.+++ +.|++ +.+..|++||.... ....+...... +
T Consensus 450 ~Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~-~~~~~~~~~~~----------h-- 516 (694)
T 3dm0_A 450 WDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGE-CKYTISEGGEG----------H-- 516 (694)
T ss_dssp TTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSC-EEEEECSSTTS----------C--
T ss_pred CCCCEEEEECCCCCCEEEEECCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCC-CCEEECCCCCC----------C--
T ss_conf 8992899979999513688679998899999089998999948897999978998-54043037788----------8--
Q ss_pred CCCEEECCCEEEECCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEHHHHHHHHCCCCEEECCCCCCCCCCCCC
Q ss_conf 54069831369970697043168865777678888889858999930787401122655214420001221232589988
Q 001814 247 YGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSS 326 (1010)
Q Consensus 247 ~gpiAlgpRwLAYas~~~~iwd~G~vs~q~lt~pv~S~stSps~gslVa~~A~dssk~la~Gi~KtLs~y~~~l~p~gs~ 326 (1010)
... ...+++..+ +..
T Consensus 517 ~~~----v~~~~~~~~---------------------------~~~---------------------------------- 531 (694)
T 3dm0_A 517 RDW----VSCVRFSPN---------------------------TLQ---------------------------------- 531 (694)
T ss_dssp SSC----EEEEEECSC---------------------------SSS----------------------------------
T ss_pred CCC----EEEEEEECC---------------------------CCC----------------------------------
T ss_conf 786----799999179---------------------------886----------------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEEECCCCCCCC
Q ss_conf 88658975544643420247997199998898928888013888859999989999999997599969999578886558
Q 001814 327 SPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRS 406 (1010)
Q Consensus 327 s~~s~s~~~k~~~~~~~sgs~dG~V~VwDl~s~~~i~~l~aHtspIsaLaFSPdGtlLATAS~dGt~IrVfdI~p~~~~~ 406 (1010)
..+++++.||.|+|||+.+.+.+..+.+|..+|.+++|+|+|++|++++.+|+ |+|||+..
T Consensus 532 -------------~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~-i~iwd~~~----- 592 (694)
T 3dm0_A 532 -------------PTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGV-VLLWDLAE----- 592 (694)
T ss_dssp -------------CEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSB-CEEEETTT-----
T ss_pred -------------CEEEEEECCCEEEEEECCCCCEEEEECCCCCCEEEEEEECCCCEEEEEECCCE-EEEEECCC-----
T ss_conf -------------55999968985999989999278998678888889999189898999958994-99998899-----
Q ss_pred CCCCCCCCCCCCCEEEEEEECCCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCC
Q ss_conf 999885446886108999952654551999999469999999948990999957899
Q 001814 407 GSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPF 463 (1010)
Q Consensus 407 ~sG~~~~~~~ss~~~Ly~L~RG~t~a~I~sIaFSpDs~~LAssS~dGTVhIw~I~~~ 463 (1010)
+ ..++.+.. ...|.+++|+||+.+|+++++ +.|+||++...
T Consensus 593 --~----------~~~~~~~~---~~~v~~~~~sp~~~~l~~~~~-~~i~iwd~~~~ 633 (694)
T 3dm0_A 593 --G----------KKLYSLEA---NSVIHALCFSPNRYWLCAATE-HGIKIWDLESK 633 (694)
T ss_dssp --T----------EEEECCBC---SSCEEEEEECSSSSEEEEEET-TEEEEEETTTT
T ss_pred --C----------CEEEEECC---CCCEEEEEECCCCCEEEEECC-CCEEEEECCCC
T ss_conf --9----------56788338---994789998599868999769-97899989999
No 10
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=1.00 E-value=1 Score=192.94 Aligned_cols=241 Identities=16% Similarity=0.154 Sum_probs=154.9
Q ss_pred CCCCCCCEEEEEEEECCCCCCCCCEEEEEEECCC-EEEEECCCCCCCEEEEEECCCCEEEEEEECCCCCCCCCCCCCCCC
Q ss_conf 8799886899997322579988881999990483-899974588960476111067789999915898787888855567
Q 001814 52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLH 130 (1010)
Q Consensus 52 ~~~~kd~V~wa~Fd~le~~~~~~~~vLllGy~~G-iqVWDl~~~g~v~ellS~hdGpV~~l~ilP~P~~s~~~D~F~~sr 130 (1010)
..+|.+.|..+.|.. ++++|+.|..+| ++|||+.. ++....+..|.++|..+.+.|++
T Consensus 51 l~gH~~~v~~~~~s~-------d~~~l~s~s~Dg~v~iWd~~~-~~~~~~~~~~~~~v~~~~~s~~~------------- 109 (340)
T 1got_B 51 LRGHLAKIYAMHWGT-------DSRLLLSASQDGKLIIWDSYT-TNKVHAIPLRSSWVMTCAYAPSG------------- 109 (340)
T ss_dssp ECCCSSCEEEEEECT-------TSSEEEEEETTTEEEEEETTT-CCEEEEEECSSSCEEEEEECTTS-------------
T ss_pred ECCCCCCEEEEEECC-------CCCEEEEEECCCCEEEEECCC-CCCCEEEECCCCCEEEEEECCCC-------------
T ss_conf 048778368999889-------999999981889689998999-87433760388618899999999-------------
Q ss_pred CEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCE----EEEEEECC-CCEEEEEECC--C
Q ss_conf 689999667888789998877766544587677899877889879998689990----99999279-9689999758--7
Q 001814 131 PFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHC----YEHVLRFR-SSVCMVRCSP--R 203 (1010)
Q Consensus 131 pLLAvV~gd~~~~s~~~q~~~~~~~vr~G~~d~~~~~~~~sp~tVrIWDlksge----~V~tLkf~-S~V~sI~~s~--~ 203 (1010)
.+|+..+ .++.|++|++.+.+ ....+..+ ..|..+.+++ .
T Consensus 110 ~~l~s~~---------------------------------~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~ 156 (340)
T 1got_B 110 NYVACGG---------------------------------LDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ 156 (340)
T ss_dssp SEEEEEE---------------------------------TTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETTE
T ss_pred CEEEEEE---------------------------------CCCEEEEEECCCCCCCCEEEEEECCCCCCEEEEEECCCCC
T ss_conf 9999980---------------------------------8981999979668886136778448776389999879996
Q ss_pred EEEEEECCEEEEEECCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCEEECC--CEEEECCCCEEECCCCCCCCCCCCCCC
Q ss_conf 599994992999978999524899305995456787534334754069831--369970697043168865777678888
Q 001814 204 IVAVGLATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP--RWLAYASNTLLLSNSGRLSPQNLTPSG 281 (1010)
Q Consensus 204 iLAVsl~~~I~IfDl~Tle~l~tL~t~psp~~~~~~~~~inv~~gpiAlgp--RwLAYas~~~~iwd~G~vs~q~lt~pv 281 (1010)
+++.+.+..|++||+.+.+...++..+..+ ...+++.| ++++
T Consensus 157 l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~-------------v~~~~~~~~~~~l~----------------------- 200 (340)
T 1got_B 157 IVTSSGDTTCALWDIETGQQTTTFTGHTGD-------------VMSLSLAPDTRLFV----------------------- 200 (340)
T ss_dssp EEEEETTSCEEEEETTTTEEEEEECCCSSC-------------EEEEEECTTSSEEE-----------------------
T ss_pred EEEEECCCCEEEEECCCCCEEEEECCCCCC-------------EEEEEECCCCCEEE-----------------------
T ss_conf 999989992999989999188997699986-------------68999989999999-----------------------
Q ss_pred CCCCCCCCCCCEEEEEEHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCE
Q ss_conf 88985899993078740112265521442000122123258998888658975544643420247997199998898928
Q 001814 282 VSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAI 361 (1010)
Q Consensus 282 ~S~stSps~gslVa~~A~dssk~la~Gi~KtLs~y~~~l~p~gs~s~~s~s~~~k~~~~~~~sgs~dG~V~VwDl~s~~~ 361 (1010)
+++.||.|++||+.++..
T Consensus 201 --------------------------------------------------------------sg~~d~~v~~wd~~~~~~ 218 (340)
T 1got_B 201 --------------------------------------------------------------SGACDASAKLWDVREGMC 218 (340)
T ss_dssp --------------------------------------------------------------EEETTSCEEEEETTTCSE
T ss_pred --------------------------------------------------------------EEECCCCEEEEECCCCEE
T ss_conf --------------------------------------------------------------993899399977899816
Q ss_pred EEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCEEEEEECC
Q ss_conf 88801388885999998999999999759996999957888655899988544688610899995265455199999946
Q 001814 362 ISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSH 441 (1010)
Q Consensus 362 i~~l~aHtspIsaLaFSPdGtlLATAS~dGt~IrVfdI~p~~~~~~sG~~~~~~~ss~~~Ly~L~RG~t~a~I~sIaFSp 441 (1010)
+..+.+|..+|.+++|+|+|.+|++++.+|+ |+|||+.. + ..+..+........|.+++|+|
T Consensus 219 ~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~-v~iwd~~~-------~----------~~~~~~~~~~~~~~v~~~~~s~ 280 (340)
T 1got_B 219 RQTFTGHESDINAICFFPNGNAFATGSDDAT-CRLFDLRA-------D----------QELMTYSHDNIICGITSVSFSK 280 (340)
T ss_dssp EEEECCCSSCEEEEEECTTSSEEEEEETTSC-EEEEETTT-------T----------EEEEEECCTTCCSCEEEEEECT
T ss_pred EEEECCCCCCEEEEEECCCCCEEEEECCCCC-EEEEECCC-------C----------CEEEEECCCCCCCCEEEEEECC
T ss_conf 7897487687799999499998999748981-99998899-------9----------1899972688524169999989
Q ss_pred CCCEEEEEECCCEEEEEECCC
Q ss_conf 999999994899099995789
Q 001814 442 YSQWIAIVSSKGTCHVFVLSP 462 (1010)
Q Consensus 442 Ds~~LAssS~dGTVhIw~I~~ 462 (1010)
|+++|++++.||+++||++..
T Consensus 281 ~g~~l~~g~~d~~i~vwd~~~ 301 (340)
T 1got_B 281 SGRLLLAGYDDFNCNVWDALK 301 (340)
T ss_dssp TSSEEEEEETTSEEEEEETTT
T ss_pred CCCEEEEECCCCEEEEEECCC
T ss_conf 999999977999099988413
Done!