Query 001816
Match_columns 1010
No_of_seqs 739 out of 7235
Neff 9.5
Searched_HMMs 29240
Date Tue Mar 26 16:34:23 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/001816.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1112-1116//hhsearch_pdb/001816hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 1.0 1 1 688.0 37.8 595 15-614 6-751 (768)
2 3rgz_A Protein brassinosteroid 1.0 1 1 540.7 30.2 493 87-586 51-557 (768)
3 1ziw_A TOLL-like receptor 3; i 1.0 1 1 508.1 38.9 544 62-606 25-625 (680)
4 3t6q_A CD180 antigen; protein- 1.0 1 1 483.8 32.1 516 62-584 33-564 (606)
5 4eco_A Uncharacterized protein 1.0 1 1 480.5 23.5 514 20-584 29-604 (636)
6 3j0a_A TOLL-like receptor 5; m 1.0 1 1 479.4 34.4 520 50-585 13-565 (844)
7 1ziw_A TOLL-like receptor 3; i 1.0 1 1 475.9 41.4 532 66-601 8-595 (680)
8 3j0a_A TOLL-like receptor 5; m 1.0 1 1 473.0 33.2 524 65-606 7-563 (844)
9 3t6q_A CD180 antigen; protein- 1.0 1 1 468.9 33.6 530 66-605 16-562 (606)
10 3vq2_A TLR4, TOLL-like recepto 1.0 1 1 462.9 28.9 512 62-585 32-563 (606)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=1.00 E-value=1 Score=687.96 Aligned_cols=595 Identities=35% Similarity=0.505 Sum_probs=463.0
Q ss_pred CCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCEEEEECCCCCCCCC---CC------------
Q ss_conf 169994479999999993699998887896899999877834848999399999089985532---48------------
Q 001816 15 SQSRTVPEYKALLSIKSSITDDPQSSLAAWNATTSHCTWPGVTCDSRRHVTSLDLSGLNLSGA---LS------------ 79 (1010)
Q Consensus 15 ~~~~~~~~~~al~~~~~~~~~~~~~~~~~w~~~~~~c~w~gv~c~~~~~v~~L~l~~~~l~~~---~~------------ 79 (1010)
+......|++||++||+++. ||. .+++|+.+.+||.|.||.|+ .++|+.|||+++.+.+. ++
T Consensus 6 ~~~~~~~~~~all~~k~~~~-~~~-~l~~W~~~~~~C~w~gv~C~-~~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~~l 82 (768)
T 3rgz_A 6 PSQSLYREIHQLISFKDVLP-DKN-LLPDWSSNKNPCTFDGVTCR-DDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESL 82 (768)
T ss_dssp --CCHHHHHHHHHHHHTTCS-CTT-SSTTCCTTSCGGGSTTEEEE-TTEEEEEECTTSCCCEEHHHHHHHTTTCTTCCEE
T ss_pred CCCCCHHHHHHHHHHHHHCC-CCC-CCCCCCCCCCCCCCCCEEEC-CCCEEEEECCCCCCCCCCCCCCHHHHCCCCCCCC
T ss_conf 56687899999999996678-962-14687899987688413878-9927898778998677557669657316802246
Q ss_pred -----------CCCCCCCCCCEEECCCCCCCCCCCC--CCCCCCCCCEECCCCCCCCCCCCCCC-CCCCCCCEECCCCCC
Q ss_conf -----------4667889887788136614798994--52133445331112632369888341-246755432045753
Q 001816 80 -----------PDVAHLRFLQNLSVAANQLSGPIPP--EISALSSLRLLNLSNNVFNGSFPPQL-SQLASLQVLDLYNNN 145 (1010)
Q Consensus 80 -----------~~~~~l~~L~~L~l~~n~l~~~~~~--~~~~l~~L~~L~Ls~n~i~~~~p~~l-~~l~~L~~L~L~~n~ 145 (1010)
..+..++.|++|+|++|.+.+.+|. .++.+++|++|+|++|.+.+.+|..+ ..+++|++|+|++|.
T Consensus 83 ~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~ 162 (768)
T 3rgz_A 83 FLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANS 162 (768)
T ss_dssp ECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSC
T ss_pred CCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCCEEECCCCC
T ss_conf 78688867870332457889989898985787078967872788999898968826774797785638899989897983
Q ss_pred CCCCCCCC---H----------------------HCCCCCCCEECCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCC
Q ss_conf 58999800---0----------------------1013644010136657778998887745586157035443222463
Q 001816 146 MTGDLPLA---V----------------------TQLRNLRHLHLGGNFFSGQIPPEYGIWEFLEYLAVSGNELGGKIPG 200 (1010)
Q Consensus 146 l~~~~p~~---l----------------------~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~N~l~~~~~~ 200 (1010)
+++..+.. + ..+++|++|++++|.+++.+|. ++.+++|++|++++|++++.+|.
T Consensus 163 l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~ 241 (768)
T 3rgz_A 163 ISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSR 241 (768)
T ss_dssp CEEETHHHHHHTTCCTTCCEEECCSSEEESCCBCTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHH
T ss_pred CCCCCCHHHHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCC-CCCCCCCCEEECCCCCCCCCCCH
T ss_conf 58858715566435898898989788034657845478689898928827887711-12699999897948858781657
Q ss_pred CCCCCCHHHHHHHCCCCCCCCCC----------------------CCCCCCC-CCCCEEECCCCCCCCCCCCCCCCCCCC
Q ss_conf 22374404678610245777799----------------------9333388-778499834887888848222277888
Q 001816 201 EIGNLTKLQQLYIGYYNSYTGGL----------------------PPEIGNL-SSLVRFDAANCGLSGEIPTDIGRLQNL 257 (1010)
Q Consensus 201 ~~~~l~~L~~L~l~~~~~~~~~~----------------------~~~~~~l-~~L~~L~l~~n~l~~~~~~~l~~l~~L 257 (1010)
.++.+++|++|+++.| .+.+.. |..+... ++|++|++++|.+++..|..+..+++|
T Consensus 242 ~l~~l~~L~~L~Ls~n-~l~~~~~~~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L 320 (768)
T 3rgz_A 242 AISTCTELKLLNISSN-QFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLL 320 (768)
T ss_dssp HTTTCSSCCEEECCSS-CCEESCCCCCCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTC
T ss_pred HHHCCCCCCEEECCCC-CCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHHCCCCCEEECCCCCCCCCCCHHHHCCCCC
T ss_conf 7744888898989888-665716724368789897917855772588888446868899896896778423677558776
Q ss_pred CEEEECCCCCCCCCCC-CCCCCCCCCEEECCCCCCCCCCCCCCCCCC-CCCEEECCCCCCCCCCCCCCCC--CCCCCCCC
Q ss_conf 7788135557787420-024567677897548857663581111468-9878965776246788800127--78546010
Q 001816 258 DTLFLQVNALSGPLTT-ELGYLKSLKSMDLSNNIFTGEIPASFAELK-NLTLLNLFRNKLHGAIPEFIGV--MPRLEVLQ 333 (1010)
Q Consensus 258 ~~L~L~~N~l~~~~~~-~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~-~L~~L~L~~N~l~~~~~~~~~~--l~~L~~L~ 333 (1010)
++|++++|.+++..+. .+..+++|++|++++|.+++..|..+..++ +|+.|++++|.+.+..+..++. +++|++|+
T Consensus 321 ~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~ 400 (768)
T 3rgz_A 321 ESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELY 400 (768)
T ss_dssp CEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEE
T ss_pred CEEECCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCHHHHHHHCCCCEEECCCCCCCCCCCHHHHHCCCCCCCEEE
T ss_conf 67789788525737978872488887884847843762309898632277199862787478767666533247761898
Q ss_pred CCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCC
Q ss_conf 34573542379677788875379716854446789366798851153403665346655101258988668827973468
Q 001816 334 LWENNFTGSIPQRLGSNGKLRILDLSSNKLTGTLPPDMCAGNCLQTLITLGNFLFGPIPESLGKCDSLSRMRMGENFLNG 413 (1010)
Q Consensus 334 l~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~ 413 (1010)
+++|.+++.+|..+..+++|+.|++++|++++.+|..+..+..|+.|.+.+|.+.+.+|..+..+++|+.|++++|.+.+
T Consensus 401 L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~ 480 (768)
T 3rgz_A 401 LQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTG 480 (768)
T ss_dssp CCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCS
T ss_pred CCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHCCCCCCEEEEECCCCCCC
T ss_conf 97784654248777568987989895884668546777449988989897881547189788287773299901995137
Q ss_pred CCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCC-
Q ss_conf 8752268999897688017612334567863454335474247424588987778766741984489846687830011-
Q 001816 414 SIPKGLFGLPSLSQVELQDNYLTGQFPVSDSISVNLGQICLSNNQLSGSLPASIGKFSGVQKLLLDGNKFSGQIPAEIG- 492 (1010)
Q Consensus 414 ~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~- 492 (1010)
..|..+..+++|+.|++++|.+++..|..+..+++|+.|++++|++++.+|..++.+++|+.|++++|.+++.+|..+.
T Consensus 481 ~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~ 560 (768)
T 3rgz_A 481 EIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFK 560 (768)
T ss_dssp CCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGT
T ss_pred CCCHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCCHHHHC
T ss_conf 58878816998998975399518968768856899998989789433748877708898998989888468827957860
Q ss_pred ---------------------------------------------------------------------CCCCCCEEEEC
Q ss_conf ---------------------------------------------------------------------33686689903
Q 001816 493 ---------------------------------------------------------------------KLQQLSKMDFS 503 (1010)
Q Consensus 493 ---------------------------------------------------------------------~l~~L~~L~Ls 503 (1010)
.++.|+.|||+
T Consensus 561 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs 640 (768)
T 3rgz_A 561 QSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMS 640 (768)
T ss_dssp TTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECC
T ss_pred CCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCEECCCCCHHHHCCCCCCEEECC
T ss_conf 42122320134542111134443222233222100135563232002321100113310046274334033566579785
Q ss_pred CCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCCHHCCCCCCCCEEEECCCCCCCCCHHHHHCCCCCCEECCCCCCCCCCC
Q ss_conf 87248999500004786639985686322430001126430125770375456875143310244543136778455788
Q 001816 504 HNKFSGRIAPEISQCKLLTFVDLSRNELSGEIPNQLTGMRILNYLNLSRNHLVGSIPASIASMQSLTSVDFSYNNLSGLV 583 (1010)
Q Consensus 504 ~N~l~~~~~~~~~~~~~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~~l~ls~N~l~~~~ 583 (1010)
+|+++|.+|.+++.++.|+.|+|++|+++|.+|..++.++.|+.|||++|+++|.+|..+..++.|+.|++++|+++|.+
T Consensus 641 ~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~i 720 (768)
T 3rgz_A 641 YNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPI 720 (768)
T ss_dssp SSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEEC
T ss_pred CCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCC
T ss_conf 88015558778841415787848688038878967847778998989788023868867757887897879688155608
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 9986566776435678866768999999899
Q 001816 584 PGTGQFSYFNYTSFLGNSELCGPYLGPCKDG 614 (1010)
Q Consensus 584 p~~~~~~~~~~~~~~~n~~lcg~~~~~c~~~ 614 (1010)
|..+++.+|...+|.||+.+||+|+++|...
T Consensus 721 P~~~~~~~~~~~~~~gN~~Lcg~~l~~C~~~ 751 (768)
T 3rgz_A 721 PEMGQFETFPPAKFLNNPGLCGYPLPRCDPS 751 (768)
T ss_dssp CSSSSGGGSCGGGGCSCTEEESTTSCCCCSC
T ss_pred CCCHHHCCCCHHHHCCCCHHCCCCCCCCCCC
T ss_conf 9960102489777569832108877678887
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=1.00 E-value=1 Score=540.67 Aligned_cols=493 Identities=30% Similarity=0.427 Sum_probs=450.2
Q ss_pred CCCEEECCCCCCCCC---CCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCC--CHHCCCCCC
Q ss_conf 887788136614798---994521334453311126323698883412467554320457535899980--001013644
Q 001816 87 FLQNLSVAANQLSGP---IPPEISALSSLRLLNLSNNVFNGSFPPQLSQLASLQVLDLYNNNMTGDLPL--AVTQLRNLR 161 (1010)
Q Consensus 87 ~L~~L~l~~n~l~~~---~~~~~~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~--~l~~l~~L~ 161 (1010)
.++.|+|+++.+.+. ++.++..++.|+.++++.|.+. .+|..++.+++|++|+|++|.+.+.+|. .++++++|+
T Consensus 51 ~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~~l~~~~~~~~-~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~ 129 (768)
T 3rgz_A 51 KVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHIN-GSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLK 129 (768)
T ss_dssp EEEEEECTTSCCCEEHHHHHHHTTTCTTCCEEECTTSCEE-ECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCC
T ss_pred CEEEEECCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCC-CCCHHHCCCCCCCEEECCCCCCCCCCCCHHHHHCCCCCC
T ss_conf 2789877899867755766965731680224678688867-870332457889989898985787078967872788999
Q ss_pred CEECCCCCCCCCCCCCC-CCCCCCCEEEECCCCCCCCCCCC---CCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEE
Q ss_conf 01013665777899888-77455861570354432224632---237440467861024577779993333887784998
Q 001816 162 HLHLGGNFFSGQIPPEY-GIWEFLEYLAVSGNELGGKIPGE---IGNLTKLQQLYIGYYNSYTGGLPPEIGNLSSLVRFD 237 (1010)
Q Consensus 162 ~L~L~~n~l~~~~~~~~-~~~~~L~~L~L~~N~l~~~~~~~---~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ 237 (1010)
+|++++|.+.+..|..+ ..+++|++|++++|++++..+.. +.++++|++|+++. +.+.+..+ +..+++|++|+
T Consensus 130 ~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~-n~l~~~~~--~~~l~~L~~L~ 206 (768)
T 3rgz_A 130 FLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISG-NKISGDVD--VSRCVNLEFLD 206 (768)
T ss_dssp EEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCS-SEEESCCB--CTTCTTCCEEE
T ss_pred EEECCCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCCHHHHHHCCCCCCCEEECCC-CCCCCCCC--CCCCCCCCEEE
T ss_conf 8989688267747977856388999898979835885871556643589889898978-80346578--45478689898
Q ss_pred CCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCC
Q ss_conf 34887888848222277888778813555778742002456767789754885766358111146898789657762467
Q 001816 238 AANCGLSGEIPTDIGRLQNLDTLFLQVNALSGPLTTELGYLKSLKSMDLSNNIFTGEIPASFAELKNLTLLNLFRNKLHG 317 (1010)
Q Consensus 238 l~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 317 (1010)
+++|.+++.+|. ++.+++|++|++++|.+++..+..+..+++|++|++++|.+++..|.. .+++|++|++++|.+.+
T Consensus 207 Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~ 283 (768)
T 3rgz_A 207 VSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTG 283 (768)
T ss_dssp CCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC--CCTTCCEEECCSSEEEE
T ss_pred CCCCCCCCCCCC-CCCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCCC--CCCCCCEEECCCCCCCC
T ss_conf 928827887711-126999998979488587816577744888898989888665716724--36878989791785577
Q ss_pred CCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCC-CCCCCCCHHHHCCCCCCCCCCCCCC
Q ss_conf 888001277-85460103457354237967778887537971685444678936-6798851153403665346655101
Q 001816 318 AIPEFIGVM-PRLEVLQLWENNFTGSIPQRLGSNGKLRILDLSSNKLTGTLPPD-MCAGNCLQTLITLGNFLFGPIPESL 395 (1010)
Q Consensus 318 ~~~~~~~~l-~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~-~~~~~~L~~L~l~~n~~~~~~~~~l 395 (1010)
.+|..+... ++|++|++++|.+++.+|..+..+++|+.|++++|.+.+.+|.. +..+..|+.|++.+|.+.+.+|..+
T Consensus 284 ~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l 363 (768)
T 3rgz_A 284 EIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESL 363 (768)
T ss_dssp SCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTH
T ss_pred CCCHHHHHHCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCHHH
T ss_conf 25888884468688998968967784236775587766778978852573797887248888788484784376230989
Q ss_pred CCCC-CCCEEECCCCCCCCCCCCCCCC--CCCCCEEEECCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCC
Q ss_conf 2589-8866882797346887522689--998976880176123345678634543354742474245889877787667
Q 001816 396 GKCD-SLSRMRMGENFLNGSIPKGLFG--LPSLSQVELQDNYLTGQFPVSDSISVNLGQICLSNNQLSGSLPASIGKFSG 472 (1010)
Q Consensus 396 ~~l~-~L~~L~l~~n~l~~~~p~~~~~--l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~ 472 (1010)
..++ +|+.|++++|.+.+..|..+.. +++|++|++++|.+++..|..+..+++|+.|++++|++++.+|..++.+++
T Consensus 364 ~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~ 443 (768)
T 3rgz_A 364 TNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSK 443 (768)
T ss_dssp HHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTT
T ss_pred HHHHCCCCEEECCCCCCCCCCCHHHHHCCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCC
T ss_conf 86322771998627874787676665332477618989778465424877756898798989588466854677744998
Q ss_pred CEEEECCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCCHHCCCCCCCCEEEECC
Q ss_conf 41984489846687830011336866899038724899950000478663998568632243000112643012577037
Q 001816 473 VQKLLLDGNKFSGQIPAEIGKLQQLSKMDFSHNKFSGRIAPEISQCKLLTFVDLSRNELSGEIPNQLTGMRILNYLNLSR 552 (1010)
Q Consensus 473 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~ls~ 552 (1010)
|+.|++++|.+++.+|..+..+++|+.|++++|++++.+|..+..+++|+.|++++|++++.+|.++..+++|++|++++
T Consensus 444 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~ 523 (768)
T 3rgz_A 444 LRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSN 523 (768)
T ss_dssp CCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCS
T ss_pred CCEEECCCCCCCCCCCHHHCCCCCCEEEEECCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCC
T ss_conf 89898978815471897882877732999019951375887881699899897539951896876885689999898978
Q ss_pred CCCCCCCHHHHHCCCCCCEECCCCCCCCCCCCCC
Q ss_conf 5456875143310244543136778455788998
Q 001816 553 NHLVGSIPASIASMQSLTSVDFSYNNLSGLVPGT 586 (1010)
Q Consensus 553 N~l~~~~~~~~~~l~~L~~l~ls~N~l~~~~p~~ 586 (1010)
|++++.+|..+..+++|+.|++++|+++|.+|..
T Consensus 524 N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~ 557 (768)
T 3rgz_A 524 NSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAA 557 (768)
T ss_dssp SCCEEECCGGGGGCTTCCEEECCSSEEESBCCGG
T ss_pred CCCCCCCCHHHCCCCCCCEEECCCCCCCCCCCHH
T ss_conf 9433748877708898998989888468827957
No 3
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=1.00 E-value=1 Score=508.05 Aligned_cols=544 Identities=19% Similarity=0.168 Sum_probs=473.2
Q ss_pred CCEEEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCEECC
Q ss_conf 93999990899855324846678898877881366147989945213344533111263236988834124675543204
Q 001816 62 RHVTSLDLSGLNLSGALSPDVAHLRFLQNLSVAANQLSGPIPPEISALSSLRLLNLSNNVFNGSFPPQLSQLASLQVLDL 141 (1010)
Q Consensus 62 ~~v~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~L 141 (1010)
.+++.|++++|.+++..+..+.+++.|+.|++++|.+++..|.+|+.+++|++|+|++|.+++..+..|+.+++|++|+|
T Consensus 25 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L 104 (680)
T 1ziw_A 25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHL 104 (680)
T ss_dssp TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred CCCCEEECCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEEC
T ss_conf 88768889899778759788717876758878899648569778740667688889998567568545303888898989
Q ss_pred CCCCCCCCCCCCHHCCCCCCCEECCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCC--CCCHHHHHHHCCCCCC
Q ss_conf 57535899980001013644010136657778998887745586157035443222463223--7440467861024577
Q 001816 142 YNNNMTGDLPLAVTQLRNLRHLHLGGNFFSGQIPPEYGIWEFLEYLAVSGNELGGKIPGEIG--NLTKLQQLYIGYYNSY 219 (1010)
Q Consensus 142 ~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~N~l~~~~~~~~~--~l~~L~~L~l~~~~~~ 219 (1010)
++|.+.+..+..|.++++|++|++++|.+++..+..++.+++|++|++++|.+++..+..+. .+++|+.|+++. +.+
T Consensus 105 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~-n~l 183 (680)
T 1ziw_A 105 MSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSS-NQI 183 (680)
T ss_dssp CSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTT-CCC
T ss_pred CCCCCCCCCHHHCCCCCCCCEEECCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCHHHHHCCCCCCCCEEECCC-CCC
T ss_conf 8996685396674156788889898995246672111245567779745884365297886244666321798889-825
Q ss_pred CCCCCCCCCCC---------------------------CCCCEEECCCCCCCCCCCCCCCCCCC--CCEEEECCCCCCCC
Q ss_conf 77999333388---------------------------77849983488788884822227788--87788135557787
Q 001816 220 TGGLPPEIGNL---------------------------SSLVRFDAANCGLSGEIPTDIGRLQN--LDTLFLQVNALSGP 270 (1010)
Q Consensus 220 ~~~~~~~~~~l---------------------------~~L~~L~l~~n~l~~~~~~~l~~l~~--L~~L~L~~N~l~~~ 270 (1010)
.+..+..+..+ ++|+.|++++|.+++..+..+..+.. |++|++++|.+++.
T Consensus 184 ~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~ 263 (680)
T 1ziw_A 184 KEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVV 263 (680)
T ss_dssp CCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEE
T ss_pred CCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEECCCCCCCCCCHHHHHCCCCCCCCEEECCCCCCCCC
T ss_conf 65581555322344554305664680567778777531510088745774364686675146767788877878876756
Q ss_pred CCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCC-----CCCC----CCCCCCCCCCCCCCCCCCCC
Q ss_conf 42002456767789754885766358111146898789657762467-----8880----01277854601034573542
Q 001816 271 LTTELGYLKSLKSMDLSNNIFTGEIPASFAELKNLTLLNLFRNKLHG-----AIPE----FIGVMPRLEVLQLWENNFTG 341 (1010)
Q Consensus 271 ~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~-----~~~~----~~~~l~~L~~L~l~~N~l~~ 341 (1010)
.+..+..+++|+.|++++|.+++..+..|..+++|+.|++++|...+ .+|. .+..+++|++|++++|.+.+
T Consensus 264 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~ 343 (680)
T 1ziw_A 264 GNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPG 343 (680)
T ss_dssp CTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCC
T ss_pred CCCCCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCHHHHCCCCCCCCCCCCHHHCCCCCCCCEEECCCCCCCC
T ss_conf 80211674105685577885676586562678885577363313213333355454386562467778888798982687
Q ss_pred CCCCCCCCCCCCCEEECCCCCCCCCC--CCCCCC--CCCCHHHHCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCC-
Q ss_conf 37967778887537971685444678--936679--8851153403665346655101258988668827973468875-
Q 001816 342 SIPQRLGSNGKLRILDLSSNKLTGTL--PPDMCA--GNCLQTLITLGNFLFGPIPESLGKCDSLSRMRMGENFLNGSIP- 416 (1010)
Q Consensus 342 ~~p~~~~~l~~L~~L~Ls~N~l~~~~--~~~~~~--~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p- 416 (1010)
..+..|.++++|++|++++|.+.... ...|.. ...|+.|++.+|.+.+..+..+..+++|+.|++++|.+.+.+|
T Consensus 344 ~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 423 (680)
T 1ziw_A 344 IKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTG 423 (680)
T ss_dssp CCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCS
T ss_pred CCHHHHCCCCCCCEEECCCCCHHHHHCCHHHHCCCCCCCCCEEECCCCCCCEECHHHHHCCCCCCEEECCCCCCCCCCCC
T ss_conf 88557406568728988798014432353220245568676688999977767754420778888886778757543575
Q ss_pred CCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCEEECCCCCCC--CCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCC
Q ss_conf 22689998976880176123345678634543354742474245--8898777876674198448984668783001133
Q 001816 417 KGLFGLPSLSQVELQDNYLTGQFPVSDSISVNLGQICLSNNQLS--GSLPASIGKFSGVQKLLLDGNKFSGQIPAEIGKL 494 (1010)
Q Consensus 417 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~N~l~--~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l 494 (1010)
..+.++++|++|++++|.+.+..+..+...++|+.|++++|.+. +.+|..+..+++|+.|++++|++++..+..+..+
T Consensus 424 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l 503 (680)
T 1ziw_A 424 QEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGL 503 (680)
T ss_dssp GGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred CCCCCCCCCCEEECCCCCCCEECHHHHHCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCHHHHCCC
T ss_conf 53257546127844899754227645500754310110146442256677645557878999899998776794463455
Q ss_pred CCCCEEEECCCCCCCCC--------CHHHCCCCCCCEEECCCCCCCCCCCHHCCCCCCCCEEEECCCCCCCCCHHHHHCC
Q ss_conf 68668990387248999--------5000047866399856863224300011264301257703754568751433102
Q 001816 495 QQLSKMDFSHNKFSGRI--------APEISQCKLLTFVDLSRNELSGEIPNQLTGMRILNYLNLSRNHLVGSIPASIASM 566 (1010)
Q Consensus 495 ~~L~~L~Ls~N~l~~~~--------~~~~~~~~~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~l 566 (1010)
++|+.|++++|++++.. ...+..++.|+.|++++|+++...+..|.++++|+.|++++|++++..+..|..+
T Consensus 504 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l 583 (680)
T 1ziw_A 504 EKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQ 583 (680)
T ss_dssp TTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred CCCCEEECCCCCCCCCCHHHCCCCCCHHHCCCCCCCEEECCCCCCCCCCHHHCCCCCCCCEEECCCCCCCCCCHHHHCCC
T ss_conf 34688858899730000000467741423379988888899997887797773466675223899997776797683789
Q ss_pred CCCCEECCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCCC
Q ss_conf 445431367784557889986--5667764356788667689
Q 001816 567 QSLTSVDFSYNNLSGLVPGTG--QFSYFNYTSFLGNSELCGP 606 (1010)
Q Consensus 567 ~~L~~l~ls~N~l~~~~p~~~--~~~~~~~~~~~~n~~lcg~ 606 (1010)
++|+.|++++|++++.+|... .+..+..+.+.||++.|..
T Consensus 584 ~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c 625 (680)
T 1ziw_A 584 VSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTC 625 (680)
T ss_dssp TTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCC
T ss_pred CCCCEEECCCCCCCCCCHHHHCCCCCCCCEEECCCCCCCCCC
T ss_conf 888889899996870596683011466577983189702577
No 4
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=1.00 E-value=1 Score=483.79 Aligned_cols=516 Identities=18% Similarity=0.146 Sum_probs=307.8
Q ss_pred CCEEEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCEECC
Q ss_conf 93999990899855324846678898877881366147989945213344533111263236988834124675543204
Q 001816 62 RHVTSLDLSGLNLSGALSPDVAHLRFLQNLSVAANQLSGPIPPEISALSSLRLLNLSNNVFNGSFPPQLSQLASLQVLDL 141 (1010)
Q Consensus 62 ~~v~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~L 141 (1010)
..++.||+++|.+++..+..+.+++.|++|++++|.+.+..|.+|+.+++|++|+|++|.+.+..|..|+.+++|++|++
T Consensus 33 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 112 (606)
T 3t6q_A 33 NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFF 112 (606)
T ss_dssp TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEEC
T ss_pred CCCCEEECCCCCCCCCCHHHHCCCCCCEEEECCCCCCCEECHHHCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEEC
T ss_conf 86758981587347179667256766528978898355248511368433676448898565458655234421537652
Q ss_pred CCCCCCCCCCCCHHCCCCCCCEECCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCHHH--HHHHCCCCCC
Q ss_conf 57535899980001013644010136657778998887745586157035443222463223744046--7861024577
Q 001816 142 YNNNMTGDLPLAVTQLRNLRHLHLGGNFFSGQIPPEYGIWEFLEYLAVSGNELGGKIPGEIGNLTKLQ--QLYIGYYNSY 219 (1010)
Q Consensus 142 ~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~--~L~l~~~~~~ 219 (1010)
++|.+++..+..+.++++|++|++++|++++...+.+..+++|++|++++|++++..+..++.+++|+ .|+++. +.+
T Consensus 113 ~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~-n~l 191 (606)
T 3t6q_A 113 IQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNG-NDI 191 (606)
T ss_dssp TTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTT-CCC
T ss_pred CCCCCCCCCCCHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCHHHHHHHCCCCEEEEECCC-CCC
T ss_conf 1267665781012237822389887983411476545687656877765684455496563322156403896679-814
Q ss_pred CCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEECCCCCC-----CCCCCCCCCCC--CCCEEECCCCCCC
Q ss_conf 7799933338877849983488788884822227788877881355577-----87420024567--6778975488576
Q 001816 220 TGGLPPEIGNLSSLVRFDAANCGLSGEIPTDIGRLQNLDTLFLQVNALS-----GPLTTELGYLK--SLKSMDLSNNIFT 292 (1010)
Q Consensus 220 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~-----~~~~~~l~~l~--~L~~L~Ls~N~l~ 292 (1010)
.+..+..+ ....|+.+++++|. ..+..+..+..+....+..+.+. ......+..+. +|+.|++++|.++
T Consensus 192 ~~~~~~~~-~~~~L~~L~l~~~~---~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~ 267 (606)
T 3t6q_A 192 AGIEPGAF-DSAVFQSLNFGGTQ---NLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFF 267 (606)
T ss_dssp CEECTTTT-TTCEEEEEECTTCS---CHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCS
T ss_pred CCCCHHHH-HHCCCCCCCCCCCH---HHHHHHHHCCCCCHHHEECHHHCCCCCCCCCHHHHCHHHCCCEEEEEEECCCCC
T ss_conf 75486673-00100135567726---677776513356442200201102641226866743032075059994457658
Q ss_pred CCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCC-C
Q ss_conf 635811114689878965776246788800127785460103457354237967778887537971685444678936-6
Q 001816 293 GEIPASFAELKNLTLLNLFRNKLHGAIPEFIGVMPRLEVLQLWENNFTGSIPQRLGSNGKLRILDLSSNKLTGTLPPD-M 371 (1010)
Q Consensus 293 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~-~ 371 (1010)
+..+..|..+++|++|++++|.++ .+|..+..+++|++|++++|.+.+..|..+..+++|+.|++++|.+.+.++.. +
T Consensus 268 ~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~ 346 (606)
T 3t6q_A 268 NISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCL 346 (606)
T ss_dssp SCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTT
T ss_pred CCCHHHHCCCCCCCEEECCCCCCC-CCCHHHCCCCCCCEEECCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCHHHH
T ss_conf 557777445667888956288267-7782141654688897716876867602330157689888989974443462455
Q ss_pred CCCCCCHHHHCCCCCCCCCC--CCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCC-CCCCCCC
Q ss_conf 79885115340366534665--51012589886688279734688752268999897688017612334567-8634543
Q 001816 372 CAGNCLQTLITLGNFLFGPI--PESLGKCDSLSRMRMGENFLNGSIPKGLFGLPSLSQVELQDNYLTGQFPV-SDSISVN 448 (1010)
Q Consensus 372 ~~~~~L~~L~l~~n~~~~~~--~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~~~~ 448 (1010)
..+..|+.|++.+|.+.+.. +..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|.+.+..+. .+..+++
T Consensus 347 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~ 426 (606)
T 3t6q_A 347 ENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHL 426 (606)
T ss_dssp TTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTT
T ss_pred HCCCCCCEEECCCCCCCCCCCCCHHCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCCCHHHHCCCC
T ss_conf 06675898878899666456752210567888989898996775788873477457768788886777565212417655
Q ss_pred CCEEECCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCC---CCCCCCCCCCCCEEEECCCCCCCCCCHHHCCCCCCCEEE
Q ss_conf 35474247424588987778766741984489846687---830011336866899038724899950000478663998
Q 001816 449 LGQICLSNNQLSGSLPASIGKFSGVQKLLLDGNKFSGQ---IPAEIGKLQQLSKMDFSHNKFSGRIAPEISQCKLLTFVD 525 (1010)
Q Consensus 449 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~---~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~ 525 (1010)
|+.|++++|++++..+..+..+++|++|++++|++++. .+..+..+++|+.|++++|++++..|..|..++.|+.|+
T Consensus 427 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 506 (606)
T 3t6q_A 427 LKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVD 506 (606)
T ss_dssp CCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred CCEEECCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEE
T ss_conf 88898989855776877873788788898989988854345431240488766887999966706864632656788898
Q ss_pred CCCCCCCCCCCHHCCCCCCCCEEEECCCCCCCCCHHHHHCCCCCCEECCCCCCCCCCCC
Q ss_conf 56863224300011264301257703754568751433102445431367784557889
Q 001816 526 LSRNELSGEIPNQLTGMRILNYLNLSRNHLVGSIPASIASMQSLTSVDFSYNNLSGLVP 584 (1010)
Q Consensus 526 ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~~l~ls~N~l~~~~p 584 (1010)
+++|++++..|..+..++.| +|++++|++++.+|..+..+++|+.+++++|++.+.++
T Consensus 507 Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 564 (606)
T 3t6q_A 507 LSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCS 564 (606)
T ss_dssp CCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGG
T ss_pred CCCCCCCCCCHHHHCCCCCC-EEECCCCCCCCCCHHHCCCCCCCCEEECCCCCCCCCCC
T ss_conf 98980686896684756651-89876894142687662567787889677998616677
No 5
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=1.00 E-value=1 Score=480.46 Aligned_cols=514 Identities=21% Similarity=0.261 Sum_probs=319.8
Q ss_pred HHHHHHHHHHHHHCCCCCCCC-------CCCCCCCCCCCCC---CCEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCC
Q ss_conf 447999999999369999888-------7896899999877---834848999399999089985532484667889887
Q 001816 20 VPEYKALLSIKSSITDDPQSS-------LAAWNATTSHCTW---PGVTCDSRRHVTSLDLSGLNLSGALSPDVAHLRFLQ 89 (1010)
Q Consensus 20 ~~~~~al~~~~~~~~~~~~~~-------~~~w~~~~~~c~w---~gv~c~~~~~v~~L~l~~~~l~~~~~~~~~~l~~L~ 89 (1010)
..|+.||.++++++..+.+.. .++|+.+++||.| .||.|+..++|+.|+|+++++.|.+|+.+.++++|+
T Consensus 29 ~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~~~~~~c~w~~~~GV~C~~~~~V~~L~L~~~~l~g~lp~~l~~L~~L~ 108 (636)
T 4eco_A 29 IKDYLALKEIWDALNGKNWSQQGFGTQPGANWNFNKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELE 108 (636)
T ss_dssp HHHHHHHHHHHHHTTGGGCCCCC------CCCCCSSCGGGTTCCTTEEECTTCCEEEEECTTSCCEEEECGGGGGCTTCC
T ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCEEEEEECCCCCCCCCCHHHHCCCCCE
T ss_conf 78899999999975899745477677657887779980001477984876789788998427665772885785684511
Q ss_pred EEECCCCCC------CC------CCCCCCCCCCCCCEECCCCCCCCCCCCCCCCC-CCCCCEECCCCCCCCCCCCCCHHC
Q ss_conf 788136614------79------89945213344533111263236988834124-675543204575358999800010
Q 001816 90 NLSVAANQL------SG------PIPPEISALSSLRLLNLSNNVFNGSFPPQLSQ-LASLQVLDLYNNNMTGDLPLAVTQ 156 (1010)
Q Consensus 90 ~L~l~~n~l------~~------~~~~~~~~l~~L~~L~Ls~n~i~~~~p~~l~~-l~~L~~L~L~~n~l~~~~p~~l~~ 156 (1010)
.|+|++|.+ .+ .+|... +..|+ ++++.|.+.+.+|..+.. +..+..+++....+.. ..
T Consensus 109 ~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~--~~~l~-l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~------~~ 179 (636)
T 4eco_A 109 VLALGSHGEKVNERLFGPKGISANMSDEQ--KQKMR-MHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKK------SS 179 (636)
T ss_dssp EEESCCGGGGGTCCSBSTTSBCTTCCHHH--HHHHH-THHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCC------CC
T ss_pred EEECCCCCCCCCCCCCCCCCCCCCCHHHH--HHHHH-HHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCC------CC
T ss_conf 89876885123774334532356733888--88887-65777554117066677887777642755465410------13
Q ss_pred CCCCCCEECC--CCCCCCCCCCCCCCCCCCCEEEECCCCCCCC-CCCCCCCCCHHHHHHHCCCCCCCCCCCCCCC--CCC
Q ss_conf 1364401013--6657778998887745586157035443222-4632237440467861024577779993333--887
Q 001816 157 LRNLRHLHLG--GNFFSGQIPPEYGIWEFLEYLAVSGNELGGK-IPGEIGNLTKLQQLYIGYYNSYTGGLPPEIG--NLS 231 (1010)
Q Consensus 157 l~~L~~L~L~--~n~l~~~~~~~~~~~~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~--~l~ 231 (1010)
...++.+.+. +|++++ +|+.++.+++|++|+|++|++++. ++..+.. .. .....+.+|..++ +++
T Consensus 180 ~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~-~~--------~~~~~~~ip~~l~~~~l~ 249 (636)
T 4eco_A 180 RITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWEN-EN--------SEYAQQYKTEDLKWDNLK 249 (636)
T ss_dssp CCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSC-TT--------SHHHHHHTTSCCCGGGCT
T ss_pred CCCHHHHHHCCCCCCCCC-CCHHHHCCCCCCEEECCCCCCCCCCCCCCCCC-CC--------CCHHCCCCCHHHHHCCCC
T ss_conf 344213001013677750-78777256478789886882366423221222-22--------100102486322004468
Q ss_pred CCCEEECCCCCCCCCCCCCCCCCCCCCEEEECCCC-CCC-CCCCCCCCC------CCCCEEECCCCCCCCCCCC--CCCC
Q ss_conf 78499834887888848222277888778813555-778-742002456------7677897548857663581--1114
Q 001816 232 SLVRFDAANCGLSGEIPTDIGRLQNLDTLFLQVNA-LSG-PLTTELGYL------KSLKSMDLSNNIFTGEIPA--SFAE 301 (1010)
Q Consensus 232 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~N~-l~~-~~~~~l~~l------~~L~~L~Ls~N~l~~~~~~--~~~~ 301 (1010)
+|++|++++|.+.+.+|..++++++|++|++++|. +++ ..|..++.+ ++|+.|++++|+++ .+|. .+..
T Consensus 250 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~ 328 (636)
T 4eco_A 250 DLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQK 328 (636)
T ss_dssp TCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTT
T ss_pred CCCEEEECCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCCHHHHHHHHCCCCCCCCCEEECCCCCCC-CCCCHHHHCC
T ss_conf 788898048857762838883499978897847988766533578875430465788888989799377-6676555425
Q ss_pred CCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCEEECCCCCCCCCCCCCCCCCCCCHHH
Q ss_conf 689878965776246788800127785460103457354237967778887-5379716854446789366798851153
Q 001816 302 LKNLTLLNLFRNKLHGAIPEFIGVMPRLEVLQLWENNFTGSIPQRLGSNGK-LRILDLSSNKLTGTLPPDMCAGNCLQTL 380 (1010)
Q Consensus 302 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~-L~~L~Ls~N~l~~~~~~~~~~~~~L~~L 380 (1010)
+++|+.|++++|.+.+.+| .++.+++|++|++++|+++ .+|..+..+++ |+.|++++|+++ .+|..+....
T Consensus 329 l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~----- 400 (636)
T 4eco_A 329 MKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKS----- 400 (636)
T ss_dssp CTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTC-----
T ss_pred CCCCCEEECCCCCCCCCHH-HHCCCCCCCEEECCCCCCC-CCCHHHHHHCCCCCEEECCCCCCC-CCCHHHHHCC-----
T ss_conf 7888989690880705166-6478898898989899403-033756510236868985298275-4466553334-----
Q ss_pred HCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCC-------CCCCCCEEEECCCCCCCCCCCCCCCCCCCCEEE
Q ss_conf 4036653466551012589886688279734688752268-------999897688017612334567863454335474
Q 001816 381 ITLGNFLFGPIPESLGKCDSLSRMRMGENFLNGSIPKGLF-------GLPSLSQVELQDNYLTGQFPVSDSISVNLGQIC 453 (1010)
Q Consensus 381 ~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~-------~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ 453 (1010)
+++|+.|++++|.+.+..|..+. .+++|+.|++++|.++..++..+..+++|+.|+
T Consensus 401 -----------------l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~ 463 (636)
T 4eco_A 401 -----------------VSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSIN 463 (636)
T ss_dssp -----------------SSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEE
T ss_pred -----------------CCCCCEEECCCCCCCCCCHHHHCCCCCCCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEE
T ss_conf -----------------576688977488578865244200220112589888897727966867878871589889898
Q ss_pred CCCCCCCCCCCCCCCC--------CCCCEEEECCCCCCCCCCCCCCC--CCCCCCEEEECCCCCCCCCCHHHCCCCCCCE
Q ss_conf 2474245889877787--------66741984489846687830011--3368668990387248999500004786639
Q 001816 454 LSNNQLSGSLPASIGK--------FSGVQKLLLDGNKFSGQIPAEIG--KLQQLSKMDFSHNKFSGRIAPEISQCKLLTF 523 (1010)
Q Consensus 454 Ls~N~l~~~~~~~~~~--------l~~L~~L~L~~N~l~~~~~~~~~--~l~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~ 523 (1010)
+++|+++ .+|..+.. +++|+.|++++|+++ .+|..+. .+++|+.|+|++|+|++ +|..+..++.|+.
T Consensus 464 Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~ 540 (636)
T 4eco_A 464 LMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKG 540 (636)
T ss_dssp CCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCE
T ss_pred CCCCCCC-CCCHHHHCCCCCCCCCCCCCCEEECCCCCCC-CCCHHHHHCCCCCCCEEECCCCCCCC-CCHHHHCCCCCCE
T ss_conf 9799788-7397884044001221477338989699388-16854534458876989898998877-6823530888787
Q ss_pred EEC------CCCCCCCCCCHHCCCCCCCCEEEECCCCCCCCCHHHHHCCCCCCEECCCCCCCCCCCC
Q ss_conf 985------6863224300011264301257703754568751433102445431367784557889
Q 001816 524 VDL------SRNELSGEIPNQLTGMRILNYLNLSRNHLVGSIPASIASMQSLTSVDFSYNNLSGLVP 584 (1010)
Q Consensus 524 L~l------s~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~~l~ls~N~l~~~~p 584 (1010)
|+| ++|++.+.+|..+..+++|++|++++|++ +.+|..+. ++|+.|++++|++.....
T Consensus 541 L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~--~~L~~L~Ls~N~l~~~~~ 604 (636)
T 4eco_A 541 FGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT--PNISVLDIKDNPNISIDL 604 (636)
T ss_dssp EECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--TTCCEEECCSCTTCEEEC
T ss_pred EECCCCCCCCCCCCCCCCHHHHHCCCCCCEEECCCCCC-CCCCHHHH--CCCCEEECCCCCCCCCCH
T ss_conf 88988866566731212737785699878898989947-70597683--867899876998763367
No 6
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=1.00 E-value=1 Score=479.37 Aligned_cols=520 Identities=21% Similarity=0.202 Sum_probs=387.5
Q ss_pred CCCCCCEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCC-CCCCCCCCCCCEECCCCCCCCCCCCC
Q ss_conf 98778348489993999990899855324846678898877881366147989-94521334453311126323698883
Q 001816 50 HCTWPGVTCDSRRHVTSLDLSGLNLSGALSPDVAHLRFLQNLSVAANQLSGPI-PPEISALSSLRLLNLSNNVFNGSFPP 128 (1010)
Q Consensus 50 ~c~w~gv~c~~~~~v~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~Ls~n~i~~~~p~ 128 (1010)
.|.|..|.+ -..+++.|||++|.+++..+.++.+++.|+.|+|++|...+.+ |.+|.++++|++|+|++|.+.+..|.
T Consensus 13 ~~~L~~vP~-lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~ 91 (844)
T 3j0a_A 13 FCNLTQVPQ-VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPD 91 (844)
T ss_dssp CCCSSCCCS-SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTT
T ss_pred CCCCCCCCC-CCCCCCEEECCCCCCCCCCHHHCCCCCCCEEEECCCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHH
T ss_conf 799777898-9998688888778678329667766213708867899774441977853787788887989958531976
Q ss_pred CCCCCCCCCEECCCCCCCCCCCCCC--HHCCCCCCCEECCCCCCCCCCC-CCCCCCCCCCEEEECCCCCCCCCCCCCCCC
Q ss_conf 4124675543204575358999800--0101364401013665777899-888774558615703544322246322374
Q 001816 129 QLSQLASLQVLDLYNNNMTGDLPLA--VTQLRNLRHLHLGGNFFSGQIP-PEYGIWEFLEYLAVSGNELGGKIPGEIGNL 205 (1010)
Q Consensus 129 ~l~~l~~L~~L~L~~n~l~~~~p~~--l~~l~~L~~L~L~~n~l~~~~~-~~~~~~~~L~~L~L~~N~l~~~~~~~~~~l 205 (1010)
.|+.+++|++|+|++|.+++.++.. |.++++|++|+|++|.+++..+ ..|+.+++|++|++++|.+++..+..+..+
T Consensus 92 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l 171 (844)
T 3j0a_A 92 AFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPL 171 (844)
T ss_dssp SSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHH
T ss_pred HCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCHHHHHCCCCCEEECCCCCCCEECHHHCCCC
T ss_conf 71578665870176788973404676455667999888987864232566557638898989898984776678875355
Q ss_pred --CHHHHHHHCCCCCCCCCCCCCCCCCCC------CCEEECCCCCCCCCCCCCCCCC---CCCCEEEECCC---------
Q ss_conf --404678610245777799933338877------8499834887888848222277---88877881355---------
Q 001816 206 --TKLQQLYIGYYNSYTGGLPPEIGNLSS------LVRFDAANCGLSGEIPTDIGRL---QNLDTLFLQVN--------- 265 (1010)
Q Consensus 206 --~~L~~L~l~~~~~~~~~~~~~~~~l~~------L~~L~l~~n~l~~~~~~~l~~l---~~L~~L~L~~N--------- 265 (1010)
++|+.|+++. +.+.+..+..+..+.. |+.|++++|.+++..+..+... .+++.+.+..+
T Consensus 172 ~~~~L~~L~L~~-n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~ 250 (844)
T 3j0a_A 172 QGKTLSFFSLAA-NSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFH 250 (844)
T ss_dssp HHCSSCCCEECC-SBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCS
T ss_pred CCCCCCEEECCC-CCCCCCCCCCHHHCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHCCCCCCCCEECCCCCCCCCCCCC
T ss_conf 677503578978-8666554553322377223574007965788686567788876427441001121212234664445
Q ss_pred CCCCCCCCCCCCC--CCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 5778742002456--76778975488576635811114689878965776246788800127785460103457354237
Q 001816 266 ALSGPLTTELGYL--KSLKSMDLSNNIFTGEIPASFAELKNLTLLNLFRNKLHGAIPEFIGVMPRLEVLQLWENNFTGSI 343 (1010)
Q Consensus 266 ~l~~~~~~~l~~l--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~ 343 (1010)
.+.......+..+ ++|+.|++++|.+.+..+..|..+++|+.|++++|.+.+..+..+..+++|++|++++|.+++..
T Consensus 251 ~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 330 (844)
T 3j0a_A 251 NIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELY 330 (844)
T ss_dssp SSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCC
T ss_pred CCCCCCHHHHHCCCCCCCCEEECCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCC
T ss_conf 66889855652555478618989799455158634525899999989798189879688368889998989899788518
Q ss_pred CCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCC
Q ss_conf 96777888753797168544467893667988511534036653466551012589886688279734688752268999
Q 001816 344 PQRLGSNGKLRILDLSSNKLTGTLPPDMCAGNCLQTLITLGNFLFGPIPESLGKCDSLSRMRMGENFLNGSIPKGLFGLP 423 (1010)
Q Consensus 344 p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~ 423 (1010)
+..+..+++|+.|++++|.+.+..+..|..+..|+.|++.+|.+.+ +..+++|+.|.+++|.+. .+|.. ..
T Consensus 331 ~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~-----i~~~~~L~~L~l~~N~l~-~l~~~---~~ 401 (844)
T 3j0a_A 331 SSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTT-----IHFIPSIPDIFLSGNKLV-TLPKI---NL 401 (844)
T ss_dssp SCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCC-----CSSCCSCSEEEEESCCCC-CCCCC---CT
T ss_pred HHHHCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCC-----CCCCCCCCHHCCCCCCCC-CCCCC---CC
T ss_conf 7884689999989898998776286661378889998898997786-----168898232005899723-14554---55
Q ss_pred CCCEEEECCCCCCCCCCC-CCCCCCCCCEEECCCCCCCCCCCC-CCCCCCCCEEEECCCCCCC-----CCCCCCCCCCCC
Q ss_conf 897688017612334567-863454335474247424588987-7787667419844898466-----878300113368
Q 001816 424 SLSQVELQDNYLTGQFPV-SDSISVNLGQICLSNNQLSGSLPA-SIGKFSGVQKLLLDGNKFS-----GQIPAEIGKLQQ 496 (1010)
Q Consensus 424 ~L~~L~L~~n~l~~~~~~-~~~~~~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~L~~N~l~-----~~~~~~~~~l~~ 496 (1010)
.++.+++++|.+++.... .+..+++|+.|++++|++++..+. .+..+++|+.|++++|.++ +..+..+..+++
T Consensus 402 ~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~ 481 (844)
T 3j0a_A 402 TANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSH 481 (844)
T ss_dssp TCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCC
T ss_pred CCCEEECCCCCCCCCCHHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCC
T ss_conf 43122145675345755666512776666667787125555433356687310024777736441013553555447553
Q ss_pred CCEEEECCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCCHHCCCCCCCCEEEECCCCCCCCCHHHHHCCCCCCEECCCC
Q ss_conf 66899038724899950000478663998568632243000112643012577037545687514331024454313677
Q 001816 497 LSKMDFSHNKFSGRIAPEISQCKLLTFVDLSRNELSGEIPNQLTGMRILNYLNLSRNHLVGSIPASIASMQSLTSVDFSY 576 (1010)
Q Consensus 497 L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~~l~ls~ 576 (1010)
|+.|+|++|+|++..+..|..+++|+.|+|++|++++..+..+. ++|+.|++++|++++..|..| .+|+.+++++
T Consensus 482 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~---~~L~~l~l~~ 556 (844)
T 3j0a_A 482 LQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDVF---VSLSVLDITH 556 (844)
T ss_dssp EECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCCC---SSCCEEEEEE
T ss_pred CCEEECCCCCCCCCCHHHCCCHHHHHEEECCCCCCCCCCHHHHH--CCCCEEECCCCCCCCCCHHHH---CCCCEEEECC
T ss_conf 65777889856553955704501221569999978745710110--045588898884788896683---7768899319
Q ss_pred CCCCCCCCC
Q ss_conf 845578899
Q 001816 577 NNLSGLVPG 585 (1010)
Q Consensus 577 N~l~~~~p~ 585 (1010)
|++.+.++.
T Consensus 557 Np~~C~c~~ 565 (844)
T 3j0a_A 557 NKFICECEL 565 (844)
T ss_dssp ECCCCSSSC
T ss_pred CCCCCCCCC
T ss_conf 970253661
No 7
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=1.00 E-value=1 Score=475.92 Aligned_cols=532 Identities=21% Similarity=0.183 Sum_probs=430.6
Q ss_pred EEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCEECCCCCC
Q ss_conf 99908998553248466788988778813661479899452133445331112632369888341246755432045753
Q 001816 66 SLDLSGLNLSGALSPDVAHLRFLQNLSVAANQLSGPIPPEISALSSLRLLNLSNNVFNGSFPPQLSQLASLQVLDLYNNN 145 (1010)
Q Consensus 66 ~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~L~~n~ 145 (1010)
.+|+++++++ .+|..+. +.++.|++++|.+++..+.+|..+++|++|+|++|.+.+..|..|+++++|++|+|++|.
T Consensus 8 ~~~cs~~~L~-~ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~ 84 (680)
T 1ziw_A 8 VADCSHLKLT-QVPDDLP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE 84 (680)
T ss_dssp EEECCSSCCS-SCCSCSC--TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSC
T ss_pred EEECCCCCCC-CCCCCCC--CCCCEEECCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCHHHHHCCCCCCEEECCCCC
T ss_conf 4487779805-2641248--887688898997787597887178767588788996485697787406676888899985
Q ss_pred CCCCCCCCHHCCCCCCCEECCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCC
Q ss_conf 58999800010136440101366577789988877455861570354432224632237440467861024577779993
Q 001816 146 MTGDLPLAVTQLRNLRHLHLGGNFFSGQIPPEYGIWEFLEYLAVSGNELGGKIPGEIGNLTKLQQLYIGYYNSYTGGLPP 225 (1010)
Q Consensus 146 l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~ 225 (1010)
++...+..|.++++|++|++++|++++..+..|+.+++|++|++++|.+++..+..++.+++|++|+++. +.+.+..+.
T Consensus 85 l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~ 163 (680)
T 1ziw_A 85 LSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSN-NKIQALKSE 163 (680)
T ss_dssp CCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCS-SCCCCBCHH
T ss_pred CCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHCCCCCCCCEEECCCCCCCCCCCHHHCCCCCCCEEECCC-CCCCCCCHH
T ss_conf 6756854530388889898989966853966741567888898989952466721112455677797458-843652978
Q ss_pred CCC--CCCCCCEEECCCCCCCCCCCCCCCCC---------------------------CCCCEEEECCCCCCCCCCCCCC
Q ss_conf 333--88778499834887888848222277---------------------------8887788135557787420024
Q 001816 226 EIG--NLSSLVRFDAANCGLSGEIPTDIGRL---------------------------QNLDTLFLQVNALSGPLTTELG 276 (1010)
Q Consensus 226 ~~~--~l~~L~~L~l~~n~l~~~~~~~l~~l---------------------------~~L~~L~L~~N~l~~~~~~~l~ 276 (1010)
.+. .+++|+.|++++|.+++..+..+..+ ++|+.|++++|.+++..+..+.
T Consensus 164 ~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~ 243 (680)
T 1ziw_A 164 ELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFL 243 (680)
T ss_dssp HHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTG
T ss_pred HHHCCCCCCCCEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEECCCCCCCCCCHHHHH
T ss_conf 86244666321798889825655815553223445543056646805677787775315100887457743646866751
Q ss_pred CCCC--CCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-----CCC----C
Q ss_conf 5676--7789754885766358111146898789657762467888001277854601034573542-----379----6
Q 001816 277 YLKS--LKSMDLSNNIFTGEIPASFAELKNLTLLNLFRNKLHGAIPEFIGVMPRLEVLQLWENNFTG-----SIP----Q 345 (1010)
Q Consensus 277 ~l~~--L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~-----~~p----~ 345 (1010)
.++. |+.|++++|.+++..+..|..+++|+.|++++|.+.+..+..+..+++|+.|++++|...+ .+| .
T Consensus 244 ~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~ 323 (680)
T 1ziw_A 244 GLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDF 323 (680)
T ss_dssp GGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTT
T ss_pred CCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCHHHHCCCCCCCCCCCCHH
T ss_conf 46767788877878876756802116741056855778856765865626788855773633132133333554543865
Q ss_pred CCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCC-CC-CCCCC--CCCCCEEECCCCCCCCCCCCCCCC
Q ss_conf 777888753797168544467893667988511534036653466-55-10125--898866882797346887522689
Q 001816 346 RLGSNGKLRILDLSSNKLTGTLPPDMCAGNCLQTLITLGNFLFGP-IP-ESLGK--CDSLSRMRMGENFLNGSIPKGLFG 421 (1010)
Q Consensus 346 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~l~~n~~~~~-~~-~~l~~--l~~L~~L~l~~n~l~~~~p~~~~~ 421 (1010)
.+..+++|+.|++++|.+.+..+..|..+..|+.|++.+|..... ++ ..+.. .++|+.|++++|.+.+..|..+..
T Consensus 324 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~ 403 (680)
T 1ziw_A 324 SFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSW 403 (680)
T ss_dssp TTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTT
T ss_pred HCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCHHHHHCCHHHHCCCCCCCCCEEECCCCCCCEECHHHHHC
T ss_conf 62467778888798982687885574065687289887980144323532202455686766889999777677544207
Q ss_pred CCCCCEEEECCCCCCCCCC-CCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCEEEECCCCCCC--CCCCCCCCCCCCCC
Q ss_conf 9989768801761233456-78634543354742474245889877787667419844898466--87830011336866
Q 001816 422 LPSLSQVELQDNYLTGQFP-VSDSISVNLGQICLSNNQLSGSLPASIGKFSGVQKLLLDGNKFS--GQIPAEIGKLQQLS 498 (1010)
Q Consensus 422 l~~L~~L~L~~n~l~~~~~-~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~--~~~~~~~~~l~~L~ 498 (1010)
+++|+.|++++|.+.+.++ ..+..+++|+.|++++|++.+..+..+..+++|+.|++++|.+. +.+|..+..+++|+
T Consensus 404 l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~ 483 (680)
T 1ziw_A 404 LGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLT 483 (680)
T ss_dssp CTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCC
T ss_pred CCCCCEEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCEECHHHHHCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 78888886778757543575532575461278448997542276455007543101101464422566776455578789
Q ss_pred EEEECCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCC--------HHCCCCCCCCEEEECCCCCCCCCHHHHHCCCCCC
Q ss_conf 89903872489995000047866399856863224300--------0112643012577037545687514331024454
Q 001816 499 KMDFSHNKFSGRIAPEISQCKLLTFVDLSRNELSGEIP--------NQLTGMRILNYLNLSRNHLVGSIPASIASMQSLT 570 (1010)
Q Consensus 499 ~L~Ls~N~l~~~~~~~~~~~~~L~~L~ls~N~l~~~~~--------~~~~~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~ 570 (1010)
.|++++|+|++..+..|..+++|+.|++++|++++..+ ..|.+++.|++|++++|+++...+..|.++++|+
T Consensus 484 ~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~ 563 (680)
T 1ziw_A 484 ILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELK 563 (680)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred EEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHCCCCCCHHHCCCCCCCEEECCCCCCCCCCHHHCCCCCCCC
T ss_conf 99899998776794463455346888588997300000004677414233799888888999978877977734666752
Q ss_pred EECCCCCCCCCCCCCC-CCCCCCCCCCCCCCC
Q ss_conf 3136778455788998-656677643567886
Q 001816 571 SVDFSYNNLSGLVPGT-GQFSYFNYTSFLGNS 601 (1010)
Q Consensus 571 ~l~ls~N~l~~~~p~~-~~~~~~~~~~~~~n~ 601 (1010)
.|++++|++++.++.. ..+..+..+.+.+|.
T Consensus 564 ~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~ 595 (680)
T 1ziw_A 564 IIDLGLNNLNTLPASVFNNQVSLKSLNLQKNL 595 (680)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred EEECCCCCCCCCCHHHHCCCCCCCEEECCCCC
T ss_conf 23899997776797683789888889899996
No 8
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=1.00 E-value=1 Score=472.96 Aligned_cols=524 Identities=20% Similarity=0.177 Sum_probs=450.5
Q ss_pred EEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCC-CCCCCCCCCCCEECCCC
Q ss_conf 99990899855324846678898877881366147989945213344533111263236988-83412467554320457
Q 001816 65 TSLDLSGLNLSGALSPDVAHLRFLQNLSVAANQLSGPIPPEISALSSLRLLNLSNNVFNGSF-PPQLSQLASLQVLDLYN 143 (1010)
Q Consensus 65 ~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~-p~~l~~l~~L~~L~L~~ 143 (1010)
...|+++++++. +|. -.+.++.|+|++|.+++..+.+|..+++|++|+|++|.+.+.+ |.+|+++++|++|+|++
T Consensus 7 ~~~dcs~~~L~~-vP~---lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~ 82 (844)
T 3j0a_A 7 RIAFYRFCNLTQ-VPQ---VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGS 82 (844)
T ss_dssp EEEEESCCCSSC-CCS---SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTT
T ss_pred EEEECCCCCCCC-CCC---CCCCCCEEECCCCCCCCCCHHHCCCCCCCEEEECCCCCCCCCCCHHHHCCCCCCCEEECCC
T ss_conf 489823799777-898---9998688888778678329667766213708867899774441977853787788887989
Q ss_pred CCCCCCCCCCHHCCCCCCCEECCCCCCCCCCCCC--CCCCCCCCEEEECCCCCCCCCC-CCCCCCCHHHHHHHCCCCCCC
Q ss_conf 5358999800010136440101366577789988--8774558615703544322246-322374404678610245777
Q 001816 144 NNMTGDLPLAVTQLRNLRHLHLGGNFFSGQIPPE--YGIWEFLEYLAVSGNELGGKIP-GEIGNLTKLQQLYIGYYNSYT 220 (1010)
Q Consensus 144 n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~--~~~~~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~l~~~~~~~ 220 (1010)
|.+.+..|..|.++++|++|+|++|.+++..+.. ++.+++|++|+|++|.+++..+ ..|+++++|+.|+++ .|.+.
T Consensus 83 N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls-~N~i~ 161 (844)
T 3j0a_A 83 SKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFS-SNQIF 161 (844)
T ss_dssp CCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEE-SSCCC
T ss_pred CCCCCCCHHHCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCHHHHHCCCCCEEECC-CCCCC
T ss_conf 95853197671578665870176788973404676455667999888987864232566557638898989898-98477
Q ss_pred CCCCCCCCCC--CCCCEEECCCCCCCCCCCCCCCCCCC------CCEEEECCCCCCCCCCCCCCCC---CCCCEEECCC-
Q ss_conf 7999333388--77849983488788884822227788------8778813555778742002456---7677897548-
Q 001816 221 GGLPPEIGNL--SSLVRFDAANCGLSGEIPTDIGRLQN------LDTLFLQVNALSGPLTTELGYL---KSLKSMDLSN- 288 (1010)
Q Consensus 221 ~~~~~~~~~l--~~L~~L~l~~n~l~~~~~~~l~~l~~------L~~L~L~~N~l~~~~~~~l~~l---~~L~~L~Ls~- 288 (1010)
+..+..+..+ ++|+.|+++.|.+.+..+..+..+.+ |+.|++++|.+++..+..+... .++..|.++.
T Consensus 162 ~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~ 241 (844)
T 3j0a_A 162 LVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHH 241 (844)
T ss_dssp CCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSS
T ss_pred EECHHHCCCCCCCCCCEEECCCCCCCCCCCCCHHHCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHCCCCCCCCEECCCC
T ss_conf 66788753556775035789788666554553322377223574007965788686567788876427441001121212
Q ss_pred --------CCCCCCCCCCCCCC--CCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEC
Q ss_conf --------85766358111146--89878965776246788800127785460103457354237967778887537971
Q 001816 289 --------NIFTGEIPASFAEL--KNLTLLNLFRNKLHGAIPEFIGVMPRLEVLQLWENNFTGSIPQRLGSNGKLRILDL 358 (1010)
Q Consensus 289 --------N~l~~~~~~~~~~l--~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L 358 (1010)
+.+.......|.++ ++|+.|++++|.+.+..+..+..+++|+.|++++|++++..+..|..+++|++|++
T Consensus 242 ~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L 321 (844)
T 3j0a_A 242 IMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNL 321 (844)
T ss_dssp CCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEE
T ss_pred CCCCCCCCCCCCCCCHHHHHCCCCCCCCEEECCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEEC
T ss_conf 23466444566889855652555478618989799455158634525899999989798189879688368889998989
Q ss_pred CCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCC
Q ss_conf 68544467893667988511534036653466551012589886688279734688752268999897688017612334
Q 001816 359 SSNKLTGTLPPDMCAGNCLQTLITLGNFLFGPIPESLGKCDSLSRMRMGENFLNGSIPKGLFGLPSLSQVELQDNYLTGQ 438 (1010)
Q Consensus 359 s~N~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ 438 (1010)
++|++.+..+..+..+..|+.|++.+|.+....+..+..+++|+.|++++|.+.. +..+++|+.+++++|.++..
T Consensus 322 s~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~-----i~~~~~L~~L~l~~N~l~~l 396 (844)
T 3j0a_A 322 SYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTT-----IHFIPSIPDIFLSGNKLVTL 396 (844)
T ss_dssp ESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCC-----CSSCCSCSEEEEESCCCCCC
T ss_pred CCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCC-----CCCCCCCCHHCCCCCCCCCC
T ss_conf 8997885187884689999989898998776286661378889998898997786-----16889823200589972314
Q ss_pred CCCCCCCCCCCCEEECCCCCCCCCCC-CCCCCCCCCEEEECCCCCCCCCCCC-CCCCCCCCCEEEECCCCCC-----CCC
Q ss_conf 56786345433547424742458898-7778766741984489846687830-0113368668990387248-----999
Q 001816 439 FPVSDSISVNLGQICLSNNQLSGSLP-ASIGKFSGVQKLLLDGNKFSGQIPA-EIGKLQQLSKMDFSHNKFS-----GRI 511 (1010)
Q Consensus 439 ~~~~~~~~~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~-~~~~l~~L~~L~Ls~N~l~-----~~~ 511 (1010)
.. ...+++.+++++|++++... ..+..+++|+.|++++|++++..+. .+..+++|+.|++++|.++ +..
T Consensus 397 ~~----~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~ 472 (844)
T 3j0a_A 397 PK----INLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELC 472 (844)
T ss_dssp CC----CCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCC
T ss_pred CC----CCCCCCEEECCCCCCCCCCHHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 55----45543122145675345755666512776666667787125555433356687310024777736441013553
Q ss_pred CHHHCCCCCCCEEECCCCCCCCCCCHHCCCCCCCCEEEECCCCCCCCCHHHHHCCCCCCEECCCCCCCCCCCCCCCCCCC
Q ss_conf 50000478663998568632243000112643012577037545687514331024454313677845578899865667
Q 001816 512 APEISQCKLLTFVDLSRNELSGEIPNQLTGMRILNYLNLSRNHLVGSIPASIASMQSLTSVDFSYNNLSGLVPGTGQFSY 591 (1010)
Q Consensus 512 ~~~~~~~~~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~~l~ls~N~l~~~~p~~~~~~~ 591 (1010)
+..|..+++|+.|+|++|++++..+..|.++++|++|+|++|++++..+..+. ++|+.|++++|++++.+|.. +..
T Consensus 473 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~--~~~ 548 (844)
T 3j0a_A 473 WDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDV--FVS 548 (844)
T ss_dssp SSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCC--CSS
T ss_pred HHHHCCCCCCCEEECCCCCCCCCCHHHCCCHHHHHEEECCCCCCCCCCHHHHH--CCCCEEECCCCCCCCCCHHH--HCC
T ss_conf 55544755365777889856553955704501221569999978745710110--04558889888478889668--377
Q ss_pred CCCCCCCCCCCCCCC
Q ss_conf 764356788667689
Q 001816 592 FNYTSFLGNSELCGP 606 (1010)
Q Consensus 592 ~~~~~~~~n~~lcg~ 606 (1010)
+..+.+.||++.|..
T Consensus 549 L~~l~l~~Np~~C~c 563 (844)
T 3j0a_A 549 LSVLDITHNKFICEC 563 (844)
T ss_dssp CCEEEEEEECCCCSS
T ss_pred CCEEEECCCCCCCCC
T ss_conf 688993199702536
No 9
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=1.00 E-value=1 Score=468.88 Aligned_cols=530 Identities=18% Similarity=0.136 Sum_probs=452.4
Q ss_pred EEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCEECCCCCC
Q ss_conf 99908998553248466788988778813661479899452133445331112632369888341246755432045753
Q 001816 66 SLDLSGLNLSGALSPDVAHLRFLQNLSVAANQLSGPIPPEISALSSLRLLNLSNNVFNGSFPPQLSQLASLQVLDLYNNN 145 (1010)
Q Consensus 66 ~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~L~~n~ 145 (1010)
.+++++.+++ .+|..+.. .++.|++++|.+++..|.+|..+++|++|+|++|.+.+..|.+|+++++|++|+|++|.
T Consensus 16 ~~~c~~~~l~-~iP~~l~~--~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~ 92 (606)
T 3t6q_A 16 TYNCENLGLN-EIPGTLPN--STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANP 92 (606)
T ss_dssp EEECTTSCCS-SCCTTSCT--TCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred EEECCCCCCC-CCCCCCCC--CCCEEECCCCCCCCCCHHHHCCCCCCEEEECCCCCCCEECHHHCCCCCCCCEEECCCCC
T ss_conf 3777779806-28677898--67589815873471796672567665289788983552485113684336764488985
Q ss_pred CCCCCCCCHHCCCCCCCEECCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCC
Q ss_conf 58999800010136440101366577789988877455861570354432224632237440467861024577779993
Q 001816 146 MTGDLPLAVTQLRNLRHLHLGGNFFSGQIPPEYGIWEFLEYLAVSGNELGGKIPGEIGNLTKLQQLYIGYYNSYTGGLPP 225 (1010)
Q Consensus 146 l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~ 225 (1010)
+.+..|..|.++++|++|++++|.+++..+..++.+++|++|++++|++.+.....+..+++|+.|+++. |.+.+..+.
T Consensus 93 l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~ 171 (606)
T 3t6q_A 93 LIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQN-NAIHYLSKE 171 (606)
T ss_dssp CSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCS-SCCCEECHH
T ss_pred CCCCCHHHHCCCCCCCEEECCCCCCCCCCCCHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCC-CCCCCCCHH
T ss_conf 6545865523442153765212676657810122378223898879834114765456876568777656-844554965
Q ss_pred CCCCCCCCC--EEECCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCEEECCCCCCC-----CCCCCC
Q ss_conf 333887784--9983488788884822227788877881355577874200245676778975488576-----635811
Q 001816 226 EIGNLSSLV--RFDAANCGLSGEIPTDIGRLQNLDTLFLQVNALSGPLTTELGYLKSLKSMDLSNNIFT-----GEIPAS 298 (1010)
Q Consensus 226 ~~~~l~~L~--~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~-----~~~~~~ 298 (1010)
.+..+++|+ .+++++|.+++..+..+. ..+|+.|++++|.. .+..+..+..+....+..+.+. ...+..
T Consensus 172 ~~~~l~~L~~l~L~l~~n~l~~~~~~~~~-~~~L~~L~l~~~~~---~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~ 247 (606)
T 3t6q_A 172 DMSSLQQATNLSLNLNGNDIAGIEPGAFD-SAVFQSLNFGGTQN---LLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAV 247 (606)
T ss_dssp HHHTTTTCCSEEEECTTCCCCEECTTTTT-TCEEEEEECTTCSC---HHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGG
T ss_pred HHHHHCCCCEEEEECCCCCCCCCCHHHHH-HCCCCCCCCCCCHH---HHHHHHHCCCCCHHHEECHHHCCCCCCCCCHHH
T ss_conf 63322156403896679814754866730-01001355677266---777765133564422002011026412268667
Q ss_pred CCCCC--CCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCC
Q ss_conf 11468--9878965776246788800127785460103457354237967778887537971685444678936679885
Q 001816 299 FAELK--NLTLLNLFRNKLHGAIPEFIGVMPRLEVLQLWENNFTGSIPQRLGSNGKLRILDLSSNKLTGTLPPDMCAGNC 376 (1010)
Q Consensus 299 ~~~l~--~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~ 376 (1010)
|..+. +|+.|++++|.+.+..+..+..+++|++|++++|.++ .+|..+..+++|++|++++|++.+..+..+..+..
T Consensus 248 ~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 326 (606)
T 3t6q_A 248 FEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPS 326 (606)
T ss_dssp GGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTT
T ss_pred HCHHHCCCEEEEEEECCCCCCCCHHHHCCCCCCCEEECCCCCCC-CCCHHHCCCCCCCEEECCCCCCCCCCHHHHHCCCC
T ss_conf 43032075059994457658557777445667888956288267-77821416546888977168768676023301576
Q ss_pred CHHHHCCCCCCCCCCCC-CCCCCCCCCEEECCCCCCCCCC--CCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCEEE
Q ss_conf 11534036653466551-0125898866882797346887--52268999897688017612334567863454335474
Q 001816 377 LQTLITLGNFLFGPIPE-SLGKCDSLSRMRMGENFLNGSI--PKGLFGLPSLSQVELQDNYLTGQFPVSDSISVNLGQIC 453 (1010)
Q Consensus 377 L~~L~l~~n~~~~~~~~-~l~~l~~L~~L~l~~n~l~~~~--p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ 453 (1010)
|+.|++.+|.+.+.++. .+..+++|+.|++++|.+.+.. +..+..+++|+.|++++|.+.+..+..+..+++|+.|+
T Consensus 327 L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 406 (606)
T 3t6q_A 327 LTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLD 406 (606)
T ss_dssp CSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEE
T ss_pred CCEEECCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCCCHHCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEE
T ss_conf 89888989974443462455066758988788996664567522105678889898989967757888734774577687
Q ss_pred CCCCCCCCCCCCC-CCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCC---CCHHHCCCCCCCEEECCCC
Q ss_conf 2474245889877-78766741984489846687830011336866899038724899---9500004786639985686
Q 001816 454 LSNNQLSGSLPAS-IGKFSGVQKLLLDGNKFSGQIPAEIGKLQQLSKMDFSHNKFSGR---IAPEISQCKLLTFVDLSRN 529 (1010)
Q Consensus 454 Ls~N~l~~~~~~~-~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~---~~~~~~~~~~L~~L~ls~N 529 (1010)
+++|++.+..+.. +..+++|+.|++++|.+++..+..+..+++|+.|++++|++++. .+..+..++.|+.|++++|
T Consensus 407 l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n 486 (606)
T 3t6q_A 407 LAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFC 486 (606)
T ss_dssp CTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTS
T ss_pred CCCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCCCCHHHCCCCCCCEEECCCC
T ss_conf 88886777565212417655888989898557768778737887888989899888543454312404887668879999
Q ss_pred CCCCCCCHHCCCCCCCCEEEECCCCCCCCCHHHHHCCCCCCEECCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCC
Q ss_conf 322430001126430125770375456875143310244543136778455788998-6566776435678866768
Q 001816 530 ELSGEIPNQLTGMRILNYLNLSRNHLVGSIPASIASMQSLTSVDFSYNNLSGLVPGT-GQFSYFNYTSFLGNSELCG 605 (1010)
Q Consensus 530 ~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~~l~ls~N~l~~~~p~~-~~~~~~~~~~~~~n~~lcg 605 (1010)
++++..|..|..++.|++|++++|++++..|..+..++.| .|++++|++++.+|.. ..+..+..+.+.||++.|.
T Consensus 487 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 562 (606)
T 3t6q_A 487 DLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCT 562 (606)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECS
T ss_pred CCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHHCCCCCC-EEECCCCCCCCCCHHHCCCCCCCCEEECCCCCCCCC
T ss_conf 6670686463265678889898980686896684756651-898768941426876625677878896779986166
No 10
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=1.00 E-value=1 Score=462.93 Aligned_cols=512 Identities=17% Similarity=0.129 Sum_probs=298.5
Q ss_pred CCEEEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCEECC
Q ss_conf 93999990899855324846678898877881366147989945213344533111263236988834124675543204
Q 001816 62 RHVTSLDLSGLNLSGALSPDVAHLRFLQNLSVAANQLSGPIPPEISALSSLRLLNLSNNVFNGSFPPQLSQLASLQVLDL 141 (1010)
Q Consensus 62 ~~v~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~L 141 (1010)
.+++.|++++|.+++..+..+.+++.|++|++++|.+++..|.+|..+++|++|+|++|.+.+..|..|+++++|++|++
T Consensus 32 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L 111 (606)
T 3vq2_A 32 SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVA 111 (606)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEEC
T ss_pred CCCCEEECCCCCCCEECHHHCCCCCCCCEEECCCCCCCCCCHHHHHCHHHCCEEECCCCCCCCCCHHHCCCCCCCCEEEC
T ss_conf 87678878889757737545557766748868877366439777306010688678798563048522078653788870
Q ss_pred CCCCCCCCCCCCHHCCCCCCCEECCCCCCCC-CCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCHHH----HHHHCCC
Q ss_conf 5753589998000101364401013665777-8998887745586157035443222463223744046----7861024
Q 001816 142 YNNNMTGDLPLAVTQLRNLRHLHLGGNFFSG-QIPPEYGIWEFLEYLAVSGNELGGKIPGEIGNLTKLQ----QLYIGYY 216 (1010)
Q Consensus 142 ~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~-~~~~~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~----~L~l~~~ 216 (1010)
++|.+.+..+..+.++++|++|++++|.+++ .+|..++.+++|++|++++|++++..+..++.+++|+ .|+++.
T Consensus 112 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~- 190 (606)
T 3vq2_A 112 VETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSL- 190 (606)
T ss_dssp TTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTT-
T ss_pred CCCCCCCCCCCCCCCCCCCCEEECCCCCCCCEECHHHHHHCCCCCEEECCCCCCEECCHHHHHHHHCCCCCCCEEECCC-
T ss_conf 3775554451134898877989687885232530686732677778876688531057334121203420024300468-
Q ss_pred CCCCCCCCCCCCCCCCCCEEECCCCCCC-CCCCCCCCCCCCCCEEEECCCCCCC------CCCCCCCCCC--CCCEEEC-
Q ss_conf 5777799933338877849983488788-8848222277888778813555778------7420024567--6778975-
Q 001816 217 NSYTGGLPPEIGNLSSLVRFDAANCGLS-GEIPTDIGRLQNLDTLFLQVNALSG------PLTTELGYLK--SLKSMDL- 286 (1010)
Q Consensus 217 ~~~~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~l~~l~~L~~L~L~~N~l~~------~~~~~l~~l~--~L~~L~L- 286 (1010)
+.+....+..+ ...+|+.|++++|.++ +..+..+.++..++.+++..+.+.. .....+..+. .++.+++
T Consensus 191 n~l~~~~~~~~-~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~ 269 (606)
T 3vq2_A 191 NPIDFIQDQAF-QGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLT 269 (606)
T ss_dssp CCCCEECTTTT-TTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEEC
T ss_pred CCCCEECCCCC-CCCEEEEEECCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCHHHEECC
T ss_conf 97532571105-67604335246785616677888602665652314111103677410268177666654347450123
Q ss_pred CCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCC
Q ss_conf 48857663581111468987896577624678880012778546010345735423796777888753797168544467
Q 001816 287 SNNIFTGEIPASFAELKNLTLLNLFRNKLHGAIPEFIGVMPRLEVLQLWENNFTGSIPQRLGSNGKLRILDLSSNKLTGT 366 (1010)
Q Consensus 287 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ 366 (1010)
..|.+.+..+. +..+++|+.|++++|.+. .++ .+..+++|+.|++++|.+. .+| .+ .+++|+.|++++|+..+.
T Consensus 270 ~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~-~l~-~l~~~~~L~~L~l~~n~l~-~lp-~~-~l~~L~~L~l~~n~~~~~ 343 (606)
T 3vq2_A 270 YTNDFSDDIVK-FHCLANVSAMSLAGVSIK-YLE-DVPKHFKWQSLSIIRCQLK-QFP-TL-DLPFLKSLTLTMNKGSIS 343 (606)
T ss_dssp CCTTCCGGGGS-CGGGTTCSEEEEESCCCC-CCC-CCCTTCCCSEEEEESCCCS-SCC-CC-CCSSCCEEEEESCSSCEE
T ss_pred CCCCCCCCCCC-CCCCCCCCEEEECCCCCH-HHH-HCCCCCCCCEEECCCCCCC-CCC-CC-CCCCCCEEECCCCCCCCC
T ss_conf 66555543222-354887898771476604-435-4334011778976466676-546-67-887556445447868531
Q ss_pred CCCCCCCCCCCHHHHCCCCCCCCC--CCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCC-CCC
Q ss_conf 893667988511534036653466--55101258988668827973468875226899989768801761233456-786
Q 001816 367 LPPDMCAGNCLQTLITLGNFLFGP--IPESLGKCDSLSRMRMGENFLNGSIPKGLFGLPSLSQVELQDNYLTGQFP-VSD 443 (1010)
Q Consensus 367 ~~~~~~~~~~L~~L~l~~n~~~~~--~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~-~~~ 443 (1010)
. .+..+..|+.|++.+|.+.+. ++..+..+++|+.|++++|.+.. .|..+..+++|+.|++++|.+.+..+ ..+
T Consensus 344 ~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 420 (606)
T 3vq2_A 344 F--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAF 420 (606)
T ss_dssp C--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTT
T ss_pred H--HHCCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCCEEECCCCCCCC-CHHHCCCCCCCCEEECCCCCCCCCCCHHHH
T ss_conf 0--0024898887977587368775201221467755486788995300-055406888889658988705875376456
Q ss_pred CCCCCCCEEECCCCCCCCCCCCCCCCCCCCEEEECCCCCCCC-CCCCCCCCCCCCCEEEECCCCCCCCCCHHHCCCCCCC
Q ss_conf 345433547424742458898777876674198448984668-7830011336866899038724899950000478663
Q 001816 444 SISVNLGQICLSNNQLSGSLPASIGKFSGVQKLLLDGNKFSG-QIPAEIGKLQQLSKMDFSHNKFSGRIAPEISQCKLLT 522 (1010)
Q Consensus 444 ~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~L~ 522 (1010)
..+++|+.|++++|++++..+..+..+++|++|++++|++++ .+|..+..+++|+.|++++|++++..+..+..+++|+
T Consensus 421 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 500 (606)
T 3vq2_A 421 LSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQ 500 (606)
T ss_dssp TTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred HCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHHHCCCCCCCEEECCCCCCCCCCHHHHCCCCCCC
T ss_conf 46213788989689787433555347787898989898379854677604578899898988857764865615464689
Q ss_pred EEECCCCCCCCCCCHHCCCCCCCCEEEECCCCCCCCCHHHHHCCC-CCCEECCCCCCCCCCCCC
Q ss_conf 998568632243000112643012577037545687514331024-454313677845578899
Q 001816 523 FVDLSRNELSGEIPNQLTGMRILNYLNLSRNHLVGSIPASIASMQ-SLTSVDFSYNNLSGLVPG 585 (1010)
Q Consensus 523 ~L~ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~l~-~L~~l~ls~N~l~~~~p~ 585 (1010)
.|++++|++++.+|..|..+++|++|++++|+++ .+|..+..++ .|+.+++++|++.+.++.
T Consensus 501 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~~ 563 (606)
T 3vq2_A 501 LLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICEH 563 (606)
T ss_dssp EEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSSTT
T ss_pred EEECCCCCCCCCCHHHCCCCCCCCEEECCCCCCC-CCCHHHHHHCCCCCEEECCCCCCCCCCCC
T ss_conf 8989899578748777068876898889898376-66876752102174887628986647764
Done!