BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 001817
(1009 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3KX2|B Chain B, Crystal Structure Of Prp43p In Complex With Adp
pdb|3KX2|A Chain A, Crystal Structure Of Prp43p In Complex With Adp
Length = 767
Score = 176 bits (446), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 136/438 (31%), Positives = 219/438 (50%), Gaps = 35/438 (7%)
Query: 567 VLCHIVKKERPGAVLVFMTGWDDINSLKDQLQAHPLLGD---------PSRVLLLACHGS 617
+ I E G +L+F+TG D+I +D ++ L GD P V L +GS
Sbjct: 293 TVLQIHATEEAGDILLFLTGEDEI---EDAVRKISLEGDQLVREEGCGPLSVYPL--YGS 347
Query: 618 MASSEQRLIFDK-PEDGV----RKIVLATNMAETSITINDVVFVIDCGKAKETSYDALNN 672
+ +Q+ IF+ PE RK+V++TN+AETS+TI+ +V+V+D G +K+ Y+
Sbjct: 348 LPPHQQQRIFEPAPESHNGRPGRKVVISTNIAETSLTIDGIVYVVDPGFSKQKVYNPRIR 407
Query: 673 TPCLLPSWISKXXXXXXXXXXXXVQPGECYHLYPRYVYDA-FADYQLPELLRTPLQSLCL 731
LL S ISK +PG+C+ LY + + PE+LR+ L S L
Sbjct: 408 VESLLVSPISKASAQQRAGRAGRTRPGKCFRLYTEEAFQKELIEQSYPEILRSNLSSTVL 467
Query: 732 QIKSLQLGSISEFLSRALQPPEPLSVKNAIEYLQIIGALDENENLTVLGRNLSMLPVEPK 791
++K L + + F + PP P ++ A+E L + LD+ NLT LGR S P++P
Sbjct: 468 ELKKLGIDDLVHF--DFMDPPAPETMMRALEELNYLACLDDEGNLTPLGRLASQFPLDPM 525
Query: 792 LGKMLILGAIFNCLDPVMTVVAGLSVRDPFLMPFDKKDLAESAKAQFSARDYSDHLALVR 851
L MLI F C ++T+VA LSV + F+ P K A+ AK F+ D DH+ L+
Sbjct: 526 LAVMLIGSFEFQCSQEILTIVAMLSVPNVFIRPTKDKKRADDAKNIFAHPD-GDHITLLN 584
Query: 852 AYDGWKDAERHQSG-YEYCWKNFLSAQTLKAIDSLRKQFLFLLKDAGLVDRNTENCNKWS 910
Y +K E ++ G +++C ++L+ ++L A D++R Q L+ L T+ +
Sbjct: 585 VYHAFKSDEAYEYGIHKWCRDHYLNYRSLSAADNIRSQLERLMNRYNLELNTTDYESPKY 644
Query: 911 HDEHLIRAVICAGLFPGLCSVVNKEKSIA--LKTMEDGQVLLYSNSVNAGVPKIPYPWLV 968
D IR + +G F V K++S A T++D Q +L S G W++
Sbjct: 645 FDN--IRKALASGFF----MQVAKKRSGAKGYITVKDNQDVLIHPSTVLGHDA---EWVI 695
Query: 969 FNEKIKVNSVFLRDSTGV 986
+NE + + ++R T V
Sbjct: 696 YNEFVLTSKNYIRTVTSV 713
Score = 154 bits (388), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 80/201 (39%), Positives = 110/201 (54%), Gaps = 2/201 (0%)
Query: 284 SPEGQKMLEFRRSLPSYKERDALLKAISENQVVVVSGETGCGKTTQLPQYILESETEAAR 343
+P+ +L+ RR LP + +RD LK NQ++V GETG GKTTQ+PQ++L E
Sbjct: 80 TPKYVDILKIRRELPVHAQRDEFLKLYQNNQIMVFVGETGSGKTTQIPQFVLFDEMPHLE 139
Query: 344 GAACSIICTQPRRISAMAVSERVAAERGEKLGESVGYKVRLEGMKGRDTRLMFCTTGIXX 403
+ CTQPRR++AM+V++RVA E KLGE VGY +R E T L + T G+
Sbjct: 140 N--TQVACTQPRRVAAMSVAQRVAEEMDVKLGEEVGYSIRFENKTSNKTILKYMTDGMLL 197
Query: 404 XXXXXXXXXXGVTHVIVDEIHERGMNEDFLLIVXXXXXXXXXXXXXXXMSATLNAELFSS 463
+ +I+DE HER + D L+ + MSATL+AE F
Sbjct: 198 REAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMSATLDAEKFQR 257
Query: 464 YFGGAPMLHIPGFTYPVRAYF 484
YF AP+L +PG TYPV Y+
Sbjct: 258 YFNDAPLLAVPGRTYPVELYY 278
>pdb|2XAU|A Chain A, Crystal Structure Of The Prp43p Deah-Box Rna Helicase In
Complex With Adp
pdb|2XAU|B Chain B, Crystal Structure Of The Prp43p Deah-Box Rna Helicase In
Complex With Adp
Length = 773
Score = 176 bits (446), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 136/438 (31%), Positives = 219/438 (50%), Gaps = 35/438 (7%)
Query: 567 VLCHIVKKERPGAVLVFMTGWDDINSLKDQLQAHPLLGD---------PSRVLLLACHGS 617
+ I E G +L+F+TG D+I +D ++ L GD P V L +GS
Sbjct: 293 TVLQIHATEEAGDILLFLTGEDEI---EDAVRKISLEGDQLVREEGCGPLSVYPL--YGS 347
Query: 618 MASSEQRLIFDK-PEDGV----RKIVLATNMAETSITINDVVFVIDCGKAKETSYDALNN 672
+ +Q+ IF+ PE RK+V++TN+AETS+TI+ +V+V+D G +K+ Y+
Sbjct: 348 LPPHQQQRIFEPAPESHNGRPGRKVVISTNIAETSLTIDGIVYVVDPGFSKQKVYNPRIR 407
Query: 673 TPCLLPSWISKXXXXXXXXXXXXVQPGECYHLYPRYVYDA-FADYQLPELLRTPLQSLCL 731
LL S ISK +PG+C+ LY + + PE+LR+ L S L
Sbjct: 408 VESLLVSPISKASAQQRAGRAGRTRPGKCFRLYTEEAFQKELIEQSYPEILRSNLSSTVL 467
Query: 732 QIKSLQLGSISEFLSRALQPPEPLSVKNAIEYLQIIGALDENENLTVLGRNLSMLPVEPK 791
++K L + + F + PP P ++ A+E L + LD+ NLT LGR S P++P
Sbjct: 468 ELKKLGIDDLVHF--DFMDPPAPETMMRALEELNYLACLDDEGNLTPLGRLASQFPLDPM 525
Query: 792 LGKMLILGAIFNCLDPVMTVVAGLSVRDPFLMPFDKKDLAESAKAQFSARDYSDHLALVR 851
L MLI F C ++T+VA LSV + F+ P K A+ AK F+ D DH+ L+
Sbjct: 526 LAVMLIGSFEFQCSQEILTIVAMLSVPNVFIRPTKDKKRADDAKNIFAHPD-GDHITLLN 584
Query: 852 AYDGWKDAERHQSG-YEYCWKNFLSAQTLKAIDSLRKQFLFLLKDAGLVDRNTENCNKWS 910
Y +K E ++ G +++C ++L+ ++L A D++R Q L+ L T+ +
Sbjct: 585 VYHAFKSDEAYEYGIHKWCRDHYLNYRSLSAADNIRSQLERLMNRYNLELNTTDYESPKY 644
Query: 911 HDEHLIRAVICAGLFPGLCSVVNKEKSIA--LKTMEDGQVLLYSNSVNAGVPKIPYPWLV 968
D IR + +G F V K++S A T++D Q +L S G W++
Sbjct: 645 FDN--IRKALASGFF----MQVAKKRSGAKGYITVKDNQDVLIHPSTVLGHDA---EWVI 695
Query: 969 FNEKIKVNSVFLRDSTGV 986
+NE + + ++R T V
Sbjct: 696 YNEFVLTSKNYIRTVTSV 713
Score = 154 bits (388), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 80/201 (39%), Positives = 110/201 (54%), Gaps = 2/201 (0%)
Query: 284 SPEGQKMLEFRRSLPSYKERDALLKAISENQVVVVSGETGCGKTTQLPQYILESETEAAR 343
+P+ +L+ RR LP + +RD LK NQ++V GETG GKTTQ+PQ++L E
Sbjct: 80 TPKYVDILKIRRELPVHAQRDEFLKLYQNNQIMVFVGETGSGKTTQIPQFVLFDEMPHLE 139
Query: 344 GAACSIICTQPRRISAMAVSERVAAERGEKLGESVGYKVRLEGMKGRDTRLMFCTTGIXX 403
+ CTQPRR++AM+V++RVA E KLGE VGY +R E T L + T G+
Sbjct: 140 N--TQVACTQPRRVAAMSVAQRVAEEMDVKLGEEVGYSIRFENKTSNKTILKYMTDGMLL 197
Query: 404 XXXXXXXXXXGVTHVIVDEIHERGMNEDFLLIVXXXXXXXXXXXXXXXMSATLNAELFSS 463
+ +I+DE HER + D L+ + MSATL+AE F
Sbjct: 198 REAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMSATLDAEKFQR 257
Query: 464 YFGGAPMLHIPGFTYPVRAYF 484
YF AP+L +PG TYPV Y+
Sbjct: 258 YFNDAPLLAVPGRTYPVELYY 278
>pdb|3LLM|A Chain A, Crystal Structure Analysis Of A Rna Helicase
pdb|3LLM|B Chain B, Crystal Structure Analysis Of A Rna Helicase
Length = 235
Score = 162 bits (410), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 83/187 (44%), Positives = 113/187 (60%), Gaps = 3/187 (1%)
Query: 288 QKMLEFRRSLPSYKERDALLKAISENQVVVVSGETGCGKTTQLPQYILESETEAARGAAC 347
Q +L+ R LP K +L+AIS+N VV++ G TGCGKTTQ+PQ+IL+ + R A C
Sbjct: 51 QAILQERELLPVKKFESEILEAISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDRAAEC 110
Query: 348 SIICTQPRRISAMAVSERVAAERGEKLGESVGYKVRLEGMKGR-DTRLMFCTTGIXXXXX 406
+I+ TQPRRISA++V+ERVA ERGE+ G+S GY VR E + R + FCT G+
Sbjct: 111 NIVVTQPRRISAVSVAERVAFERGEEPGKSCGYSVRFESILPRPHASIXFCTVGV--LLR 168
Query: 407 XXXXXXXGVTHVIVDEIHERGMNEDFLLIVXXXXXXXXXXXXXXXMSATLNAELFSSYFG 466
G++HVIVDEIHER +N DFLL+V SAT++ F YF
Sbjct: 169 KLEAGIRGISHVIVDEIHERDINTDFLLVVLRDVVQAYPEVRIVLXSATIDTSXFCEYFF 228
Query: 467 GAPMLHI 473
P++ +
Sbjct: 229 NCPIIEV 235
>pdb|3I4U|A Chain A, Crystal Structure Analysis Of A Helicase Associated Domain
Length = 270
Score = 117 bits (292), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 73/237 (30%), Positives = 128/237 (54%), Gaps = 15/237 (6%)
Query: 759 NAIEYLQIIGALDENENLTVLGRNLSMLPVEPKLGKMLILGAIFNCLDPVMTVVAGLSVR 818
A+E L +GALD+ LT LGR ++ P+EP L KMLI+ C + ++T+V+ LSV+
Sbjct: 22 TAMEQLYTLGALDDEGLLTRLGRRMAEFPLEPMLCKMLIMSVHLGCSEEMLTIVSMLSVQ 81
Query: 819 DPFLMPFDKKDLAESAKAQFSARDYSDHLALVRAYDGWKDAERHQSGYEYCWKNFLSAQT 878
+ F P DK+ LA+ KA+F + DHL L+ Y+ WK+ ++ +C++NF+ A++
Sbjct: 82 NVFYRPKDKQALADQKKAKFHQTE-GDHLTLLAVYNSWKN---NKFSNPWCYENFIQARS 137
Query: 879 LKAIDSLRKQFLFLLKDAGLVDRNTENCNKWSHDEHLIRAVICAGLFPGLCSVVNKEKSI 938
L+ +RKQ L G++DR+ + ++ IC+G F + K+
Sbjct: 138 LRRAQDIRKQML------GIMDRHKLDVVSCGKSTVRVQKAICSGFFR---NAAKKDPQE 188
Query: 939 ALKTMEDGQVLLYSNSVNAGVPKIPYPWLVFNEKIKVNSVFLRDSTGVSDSVLLLFG 995
+T+ D QV +Y + +A + P W+V++E + ++R+ T + L+ F
Sbjct: 189 GYRTLIDQQV-VYIHPSSALFNRQP-EWVVYHELVLTTKEYMREVTTIDPRWLVEFA 243
>pdb|4B3F|X Chain X, Crystal Structure Of 1ghmbp2 Helicase
Length = 646
Score = 37.4 bits (85), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 42/77 (54%), Gaps = 5/77 (6%)
Query: 291 LEFRRSLPSYKERDALLKAISENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSII 350
L F + +++A+L A+S+ ++ ++ G G GKTT + + IL++ + + ++
Sbjct: 183 LTFFNTCLDTSQKEAVLFALSQKELAIIHGPPGTGKTTTVVEIILQAVKQGLK-----VL 237
Query: 351 CTQPRRISAMAVSERVA 367
C P I+ + ER+A
Sbjct: 238 CCAPSNIAVDNLVERLA 254
>pdb|4B3G|A Chain A, Crystal Structure Of Ighmbp2 Helicase In Complex With Rna
pdb|4B3G|B Chain B, Crystal Structure Of Ighmbp2 Helicase In Complex With Rna
Length = 646
Score = 37.4 bits (85), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 42/77 (54%), Gaps = 5/77 (6%)
Query: 291 LEFRRSLPSYKERDALLKAISENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSII 350
L F + +++A+L A+S+ ++ ++ G G GKTT + + IL++ + + ++
Sbjct: 183 LTFFNTCLDTSQKEAVLFALSQKELAIIHGPPGTGKTTTVVEIILQAVKQGLK-----VL 237
Query: 351 CTQPRRISAMAVSERVA 367
C P I+ + ER+A
Sbjct: 238 CCAPSNIAVDNLVERLA 254
>pdb|2GZA|A Chain A, Crystal Structure Of The Virb11 Atpase From The Brucella
Suis Type Iv Secretion System In Complex With Sulphate
pdb|2GZA|B Chain B, Crystal Structure Of The Virb11 Atpase From The Brucella
Suis Type Iv Secretion System In Complex With Sulphate
pdb|2GZA|C Chain C, Crystal Structure Of The Virb11 Atpase From The Brucella
Suis Type Iv Secretion System In Complex With Sulphate
Length = 361
Score = 34.3 bits (77), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 40/73 (54%), Gaps = 5/73 (6%)
Query: 261 VVRERILRQRSLQMHEKQQAWQE-SPEGQKMLEFRRSLPSYKER----DALLKAISENQV 315
+R+ +R+L+ + +Q ++ P + + F + L + KE L +A+ +V
Sbjct: 118 TIRKPSFTRRTLEDYAQQGFFKHVRPMSKSLTPFEQELLALKEAGDYMSFLRRAVQLERV 177
Query: 316 VVVSGETGCGKTT 328
+VV+GETG GKTT
Sbjct: 178 IVVAGETGSGKTT 190
>pdb|2F86|B Chain B, The Association Domain Of C. Elegans Camkii
pdb|2F86|D Chain D, The Association Domain Of C. Elegans Camkii
pdb|2F86|F Chain F, The Association Domain Of C. Elegans Camkii
pdb|2F86|J Chain J, The Association Domain Of C. Elegans Camkii
pdb|2F86|H Chain H, The Association Domain Of C. Elegans Camkii
pdb|2F86|N Chain N, The Association Domain Of C. Elegans Camkii
pdb|2F86|L Chain L, The Association Domain Of C. Elegans Camkii
Length = 143
Score = 33.9 bits (76), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 10/69 (14%)
Query: 502 IDDYGQEKSWKMQKQALALRKRKSSIASAVEDALEAADFREYSVQTQQSLSCWNPDSIGF 561
IDD EK+ QKQ + + + DA+ DF Y+ S++C+ P+++G
Sbjct: 1 IDDNDSEKA---QKQDIV------RVTQTLLDAISCKDFETYTRLCDTSMTCFEPEALG- 50
Query: 562 NLIEHVLCH 570
NLIE + H
Sbjct: 51 NLIEGIEFH 59
>pdb|2HJV|A Chain A, Structure Of The Second Domain (Residues 207-368) Of The
Bacillus Subtilis Yxin Protein
pdb|2HJV|B Chain B, Structure Of The Second Domain (Residues 207-368) Of The
Bacillus Subtilis Yxin Protein
Length = 163
Score = 33.5 bits (75), Expect = 0.60, Method: Composition-based stats.
Identities = 25/98 (25%), Positives = 49/98 (50%), Gaps = 11/98 (11%)
Query: 561 FNLIEHVLCHIVKKERPGAVLVFMTGWDDINSLKDQLQAHPLLGDPSRVLLLACHGSMAS 620
F+L++ VL E P + ++F + +N L D+L LG P + HG M
Sbjct: 23 FSLLKDVL----MTENPDSCIIFCRTKEHVNQLTDELDD---LGYPCDKI----HGGMIQ 71
Query: 621 SEQRLIFDKPEDGVRKIVLATNMAETSITINDVVFVID 658
++ + ++ + G + ++AT++A I I ++ VI+
Sbjct: 72 EDRFDVMNEFKRGEYRYLVATDVAARGIDIENISLVIN 109
>pdb|3G9X|A Chain A, Structure Of Haloalkane Dehalogenase Dhaa14 Mutant I135f
From Rhodococcus Rhodochrous
Length = 299
Score = 32.0 bits (71), Expect = 2.0, Method: Composition-based stats.
Identities = 23/69 (33%), Positives = 33/69 (47%), Gaps = 4/69 (5%)
Query: 796 LILGAIFNCLDPVMTVVAGLSVRDPFLMPFDKKDLAESAKAQFSARDYSDHLALVRAYDG 855
I GA+ C+ +T V R+PFL P D++ L A + ++ +ALV AY
Sbjct: 168 FIEGALPKCVVRPLTEVEMDHYREPFLKPVDREPLWRFPNELPIAGEPANIVALVEAYMN 227
Query: 856 WKDAERHQS 864
W HQS
Sbjct: 228 W----LHQS 232
>pdb|1A9X|A Chain A, Carbamoyl Phosphate Synthetase: Caught In The Act Of
Glutamine Hydrolysis
pdb|1A9X|C Chain C, Carbamoyl Phosphate Synthetase: Caught In The Act Of
Glutamine Hydrolysis
pdb|1A9X|E Chain E, Carbamoyl Phosphate Synthetase: Caught In The Act Of
Glutamine Hydrolysis
pdb|1A9X|G Chain G, Carbamoyl Phosphate Synthetase: Caught In The Act Of
Glutamine Hydrolysis
Length = 1073
Score = 31.2 bits (69), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 37/152 (24%), Positives = 68/152 (44%), Gaps = 20/152 (13%)
Query: 534 ALEAADFREYSVQTQQSLSCWNPDSIGFNLIE----HVLCHIVKKERPGAVLVFMTGWDD 589
AL +R +V + + +P+ IE V+ I++KERP AVL M G
Sbjct: 36 ALREEGYRVINVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLPTMGGQTA 95
Query: 590 INSLKDQLQAHPLLGDPSRVLLLACHGSMASSEQRLIFDKPEDGVRKIVLATNMAETSIT 649
+N +L+ +L + ++ A ++ +E R FD ++KI L T + + T
Sbjct: 96 LNCAL-ELERQGVLEEFGVTMIGATADAIDKAEDRRRFDV---AMKKIGLETARSGIAHT 151
Query: 650 INDVVFVIDCGKAKETSYDALNNTPCLL-PSW 680
+ + + V A + + PC++ PS+
Sbjct: 152 MEEALAV-----AADVGF------PCIIRPSF 172
>pdb|1CE8|A Chain A, Carbamoyl Phosphate Synthetase From Escherichis Coli With
Complexed With The Allosteric Ligand Imp
pdb|1CE8|C Chain C, Carbamoyl Phosphate Synthetase From Escherichis Coli With
Complexed With The Allosteric Ligand Imp
pdb|1CE8|E Chain E, Carbamoyl Phosphate Synthetase From Escherichis Coli With
Complexed With The Allosteric Ligand Imp
pdb|1CE8|G Chain G, Carbamoyl Phosphate Synthetase From Escherichis Coli With
Complexed With The Allosteric Ligand Imp
pdb|1M6V|A Chain A, Crystal Structure Of The G359f (Small Subunit) Point
Mutant Of Carbamoyl Phosphate Synthetase
pdb|1M6V|C Chain C, Crystal Structure Of The G359f (Small Subunit) Point
Mutant Of Carbamoyl Phosphate Synthetase
pdb|1M6V|E Chain E, Crystal Structure Of The G359f (Small Subunit) Point
Mutant Of Carbamoyl Phosphate Synthetase
pdb|1M6V|G Chain G, Crystal Structure Of The G359f (Small Subunit) Point
Mutant Of Carbamoyl Phosphate Synthetase
Length = 1073
Score = 31.2 bits (69), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 37/152 (24%), Positives = 68/152 (44%), Gaps = 20/152 (13%)
Query: 534 ALEAADFREYSVQTQQSLSCWNPDSIGFNLIE----HVLCHIVKKERPGAVLVFMTGWDD 589
AL +R +V + + +P+ IE V+ I++KERP AVL M G
Sbjct: 36 ALREEGYRVINVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLPTMGGQTA 95
Query: 590 INSLKDQLQAHPLLGDPSRVLLLACHGSMASSEQRLIFDKPEDGVRKIVLATNMAETSIT 649
+N +L+ +L + ++ A ++ +E R FD ++KI L T + + T
Sbjct: 96 LNCAL-ELERQGVLEEFGVTMIGATADAIDKAEDRRRFDV---AMKKIGLETARSGIAHT 151
Query: 650 INDVVFVIDCGKAKETSYDALNNTPCLL-PSW 680
+ + + V A + + PC++ PS+
Sbjct: 152 MEEALAV-----AADVGF------PCIIRPSF 172
>pdb|2W4A|M Chain M, Isometrically Contracting Insect Asynchronous Flight
Muscle
pdb|2W4G|M Chain M, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Quick Stretch Step
pdb|2W4H|M Chain M, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Quick Release Step
Length = 840
Score = 30.4 bits (67), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 20/33 (60%)
Query: 312 ENQVVVVSGETGCGKTTQLPQYILESETEAARG 344
ENQ ++++GE+G GKT + I T AA G
Sbjct: 168 ENQSILITGESGAGKTVNTKRVIQYFATIAASG 200
>pdb|4F5Z|A Chain A, Crystal Structure Of Rhodococcus Rhodochrous Haloalkane
Dehalogenase Mutant (l95v, A172v)
Length = 299
Score = 30.0 bits (66), Expect = 6.7, Method: Composition-based stats.
Identities = 22/69 (31%), Positives = 32/69 (46%), Gaps = 4/69 (5%)
Query: 796 LILGAIFNCLDPVMTVVAGLSVRDPFLMPFDKKDLAESAKAQFSARDYSDHLALVRAYDG 855
I G + C+ +T V R+PFL P D++ L A + ++ +ALV AY
Sbjct: 168 FIEGVLPKCVVRPLTEVEMDHYREPFLKPVDREPLWRFPNELPIAGEPANIVALVEAYMN 227
Query: 856 WKDAERHQS 864
W HQS
Sbjct: 228 W----LHQS 232
>pdb|1JDB|B Chain B, Carbamoyl Phosphate Synthetase From Escherichia Coli
pdb|1JDB|E Chain E, Carbamoyl Phosphate Synthetase From Escherichia Coli
pdb|1JDB|H Chain H, Carbamoyl Phosphate Synthetase From Escherichia Coli
pdb|1JDB|K Chain K, Carbamoyl Phosphate Synthetase From Escherichia Coli
pdb|1BXR|A Chain A, Structure Of Carbamoyl Phosphate Synthetase Complexed With
The Atp Analog Amppnp
pdb|1BXR|C Chain C, Structure Of Carbamoyl Phosphate Synthetase Complexed With
The Atp Analog Amppnp
pdb|1BXR|E Chain E, Structure Of Carbamoyl Phosphate Synthetase Complexed With
The Atp Analog Amppnp
pdb|1BXR|G Chain G, Structure Of Carbamoyl Phosphate Synthetase Complexed With
The Atp Analog Amppnp
pdb|1C30|A Chain A, Crystal Structure Of Carbamoyl Phosphate Synthetase: Small
Subunit Mutation C269s
pdb|1C30|C Chain C, Crystal Structure Of Carbamoyl Phosphate Synthetase: Small
Subunit Mutation C269s
pdb|1C30|E Chain E, Crystal Structure Of Carbamoyl Phosphate Synthetase: Small
Subunit Mutation C269s
pdb|1C30|G Chain G, Crystal Structure Of Carbamoyl Phosphate Synthetase: Small
Subunit Mutation C269s
pdb|1C3O|A Chain A, Crystal Structure Of The Carbamoyl Phosphate Synthetase:
Small Subunit Mutant C269s With Bound Glutamine
pdb|1C3O|C Chain C, Crystal Structure Of The Carbamoyl Phosphate Synthetase:
Small Subunit Mutant C269s With Bound Glutamine
pdb|1C3O|E Chain E, Crystal Structure Of The Carbamoyl Phosphate Synthetase:
Small Subunit Mutant C269s With Bound Glutamine
pdb|1C3O|G Chain G, Crystal Structure Of The Carbamoyl Phosphate Synthetase:
Small Subunit Mutant C269s With Bound Glutamine
pdb|1CS0|A Chain A, Crystal Structure Of Carbamoyl Phosphate Synthetase
Complexed At Cys269 In The Small Subunit With The
Tetrahedral Mimic L-glutamate Gamma-semialdehyde
pdb|1CS0|C Chain C, Crystal Structure Of Carbamoyl Phosphate Synthetase
Complexed At Cys269 In The Small Subunit With The
Tetrahedral Mimic L-glutamate Gamma-semialdehyde
pdb|1CS0|E Chain E, Crystal Structure Of Carbamoyl Phosphate Synthetase
Complexed At Cys269 In The Small Subunit With The
Tetrahedral Mimic L-glutamate Gamma-semialdehyde
pdb|1CS0|G Chain G, Crystal Structure Of Carbamoyl Phosphate Synthetase
Complexed At Cys269 In The Small Subunit With The
Tetrahedral Mimic L-glutamate Gamma-semialdehyde
pdb|1KEE|A Chain A, Inactivation Of The Amidotransferase Activity Of Carbamoyl
Phosphate Synthetase By The Antibiotic Acivicin
pdb|1KEE|C Chain C, Inactivation Of The Amidotransferase Activity Of Carbamoyl
Phosphate Synthetase By The Antibiotic Acivicin
pdb|1KEE|E Chain E, Inactivation Of The Amidotransferase Activity Of Carbamoyl
Phosphate Synthetase By The Antibiotic Acivicin
pdb|1KEE|G Chain G, Inactivation Of The Amidotransferase Activity Of Carbamoyl
Phosphate Synthetase By The Antibiotic Acivicin
pdb|1T36|A Chain A, Crystal Structure Of E. Coli Carbamoyl Phosphate
Synthetase Small Subunit Mutant C248d Complexed With
Uridine 5'-Monophosphate
pdb|1T36|C Chain C, Crystal Structure Of E. Coli Carbamoyl Phosphate
Synthetase Small Subunit Mutant C248d Complexed With
Uridine 5'-Monophosphate
pdb|1T36|E Chain E, Crystal Structure Of E. Coli Carbamoyl Phosphate
Synthetase Small Subunit Mutant C248d Complexed With
Uridine 5'-Monophosphate
pdb|1T36|G Chain G, Crystal Structure Of E. Coli Carbamoyl Phosphate
Synthetase Small Subunit Mutant C248d Complexed With
Uridine 5'-Monophosphate
Length = 1073
Score = 30.0 bits (66), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 37/152 (24%), Positives = 67/152 (44%), Gaps = 20/152 (13%)
Query: 534 ALEAADFREYSVQTQQSLSCWNPDSIGFNLIE----HVLCHIVKKERPGAVLVFMTGWDD 589
AL +R V + + +P+ IE V+ I++KERP AVL M G
Sbjct: 36 ALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLPTMGGQTA 95
Query: 590 INSLKDQLQAHPLLGDPSRVLLLACHGSMASSEQRLIFDKPEDGVRKIVLATNMAETSIT 649
+N +L+ +L + ++ A ++ +E R FD ++KI L T + + T
Sbjct: 96 LNCAL-ELERQGVLEEFGVTMIGATADAIDKAEDRRRFDV---AMKKIGLETARSGIAHT 151
Query: 650 INDVVFVIDCGKAKETSYDALNNTPCLL-PSW 680
+ + + V A + + PC++ PS+
Sbjct: 152 MEEALAV-----AADVGF------PCIIRPSF 172
>pdb|2MYS|A Chain A, Myosin Subfragment-1, Alpha Carbon Coordinates Only For
The Two Light Chains
Length = 843
Score = 30.0 bits (66), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 20/33 (60%)
Query: 312 ENQVVVVSGETGCGKTTQLPQYILESETEAARG 344
ENQ ++++GE+G GKT + I T AA G
Sbjct: 171 ENQSILITGESGAGKTVNTXRVIQYFATIAASG 203
>pdb|1M8Q|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1M8Q|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1M8Q|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1M8Q|P Chain P, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1MVW|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1MVW|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1MVW|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1MVW|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1MVW|M Chain M, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1MVW|P Chain P, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O18|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O18|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O18|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O18|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O18|M Chain M, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O18|P Chain P, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O19|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O19|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O19|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O19|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O19|M Chain M, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O19|S Chain S, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1A|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1A|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1A|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1A|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1A|M Chain M, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1A|P Chain P, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1B|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1B|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1B|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1B|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1C|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1C|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1C|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1C|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1C|P Chain P, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1D|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1D|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1D|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1D|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1D|M Chain M, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1D|P Chain P, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1E|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1E|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1E|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1E|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1E|M Chain M, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1E|P Chain P, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1F|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1F|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1F|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1F|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1G|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1G|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1G|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1G|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1G|M Chain M, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1G|P Chain P, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
Length = 840
Score = 30.0 bits (66), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 20/33 (60%)
Query: 312 ENQVVVVSGETGCGKTTQLPQYILESETEAARG 344
ENQ ++++GE+G GKT + I T AA G
Sbjct: 168 ENQSILITGESGAGKTVNTXRVIQYFATIAASG 200
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.393
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,090,723
Number of Sequences: 62578
Number of extensions: 989148
Number of successful extensions: 2583
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 2549
Number of HSP's gapped (non-prelim): 21
length of query: 1009
length of database: 14,973,337
effective HSP length: 108
effective length of query: 901
effective length of database: 8,214,913
effective search space: 7401636613
effective search space used: 7401636613
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)