Query 001817
Match_columns 1009
No_of_seqs 619 out of 3422
Neff 7.5
Searched_HMMs 46136
Date Fri Mar 29 10:01:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001817.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001817hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0920 ATP-dependent RNA heli 100.0 9E-135 2E-139 1210.8 56.9 815 132-1007 23-857 (924)
2 KOG0922 DEAH-box RNA helicase 100.0 9E-129 2E-133 1102.5 50.9 630 285-1004 38-671 (674)
3 KOG0924 mRNA splicing factor A 100.0 8E-125 2E-129 1051.7 43.6 625 288-1002 346-975 (1042)
4 KOG0923 mRNA splicing factor A 100.0 1E-122 3E-127 1034.7 44.3 625 288-1001 255-884 (902)
5 KOG0925 mRNA splicing factor A 100.0 2E-118 5E-123 971.2 44.7 625 283-999 32-666 (699)
6 PRK11131 ATP-dependent RNA hel 100.0 1E-110 2E-115 1041.0 59.9 627 290-1003 66-700 (1294)
7 TIGR01967 DEAH_box_HrpA ATP-de 100.0 3E-106 5E-111 1006.5 60.0 626 289-1002 58-689 (1283)
8 COG1643 HrpA HrpA-like helicas 100.0 5E-103 1E-107 943.8 46.7 634 284-998 36-709 (845)
9 KOG0926 DEAH-box RNA helicase 100.0 5E-101 1E-105 873.2 40.8 634 288-1002 246-1025(1172)
10 TIGR01970 DEAH_box_HrpB ATP-de 100.0 4.5E-83 9.7E-88 784.2 53.8 572 297-998 1-576 (819)
11 PRK11664 ATP-dependent RNA hel 100.0 1.5E-82 3.2E-87 781.7 53.6 560 296-997 3-568 (812)
12 KOG0921 Dosage compensation co 100.0 7.1E-79 1.5E-83 698.4 27.7 703 282-1002 362-1075(1282)
13 PHA02653 RNA helicase NPH-II; 100.0 4.7E-55 1E-59 525.4 34.6 405 296-801 163-595 (675)
14 PRK01172 ski2-like helicase; P 100.0 1.7E-40 3.8E-45 409.9 44.5 423 297-802 21-493 (674)
15 PRK02362 ski2-like helicase; P 100.0 5.1E-40 1.1E-44 408.6 42.3 427 298-802 24-515 (737)
16 KOG0330 ATP-dependent RNA heli 100.0 3.7E-40 8E-45 353.5 19.6 318 295-710 81-409 (476)
17 PRK00254 ski2-like helicase; P 100.0 3.4E-37 7.4E-42 382.4 42.0 431 289-800 14-504 (720)
18 KOG0331 ATP-dependent RNA heli 100.0 2.2E-38 4.8E-43 362.1 25.1 327 292-711 108-451 (519)
19 PRK11776 ATP-dependent RNA hel 100.0 2.1E-37 4.6E-42 366.7 29.8 313 296-710 25-351 (460)
20 PRK11192 ATP-dependent RNA hel 100.0 2.1E-37 4.4E-42 364.4 26.8 318 297-712 23-356 (434)
21 PRK04837 ATP-dependent RNA hel 100.0 4.9E-37 1.1E-41 359.8 28.5 317 293-710 26-364 (423)
22 PRK10590 ATP-dependent RNA hel 100.0 8.2E-37 1.8E-41 360.6 29.0 317 295-710 21-354 (456)
23 PTZ00110 helicase; Provisional 100.0 1.1E-36 2.5E-41 365.1 29.5 324 294-710 149-486 (545)
24 PRK11634 ATP-dependent RNA hel 100.0 3.2E-36 7E-41 364.4 31.3 312 297-709 28-353 (629)
25 PRK01297 ATP-dependent RNA hel 100.0 1.3E-36 2.9E-41 361.1 26.7 326 285-709 96-443 (475)
26 PRK04537 ATP-dependent RNA hel 100.0 3E-36 6.6E-41 362.6 28.9 315 294-709 28-365 (572)
27 PLN00206 DEAD-box ATP-dependen 100.0 3E-36 6.5E-41 360.3 27.7 316 295-710 141-477 (518)
28 COG0513 SrmB Superfamily II DN 100.0 7.2E-36 1.5E-40 355.0 27.8 320 290-708 44-380 (513)
29 COG1204 Superfamily II helicas 100.0 1.4E-35 3.1E-40 361.5 30.7 427 300-804 34-529 (766)
30 TIGR03817 DECH_helic helicase/ 100.0 9.8E-36 2.1E-40 366.8 25.3 340 289-707 27-385 (742)
31 PTZ00424 helicase 45; Provisio 100.0 3.6E-35 7.8E-40 342.1 27.9 318 295-712 48-378 (401)
32 KOG0338 ATP-dependent RNA heli 100.0 6E-36 1.3E-40 329.4 18.5 338 279-709 181-534 (691)
33 KOG0333 U5 snRNP-like RNA heli 100.0 3.1E-35 6.7E-40 325.2 22.9 336 278-709 244-625 (673)
34 COG1202 Superfamily II helicas 100.0 1.9E-34 4.1E-39 321.2 26.3 455 284-838 202-702 (830)
35 KOG0328 Predicted ATP-dependen 100.0 4.3E-35 9.4E-40 302.1 19.5 328 289-712 41-377 (400)
36 KOG0343 RNA Helicase [RNA proc 100.0 6E-35 1.3E-39 324.0 22.0 359 261-711 51-425 (758)
37 KOG0345 ATP-dependent RNA heli 100.0 1.4E-34 3E-39 317.1 22.6 338 299-726 29-385 (567)
38 KOG0342 ATP-dependent RNA heli 100.0 6.6E-34 1.4E-38 314.2 25.8 319 298-708 104-437 (543)
39 PRK13767 ATP-dependent helicas 100.0 1.5E-33 3.2E-38 354.1 29.7 401 289-769 24-477 (876)
40 TIGR00614 recQ_fam ATP-depende 100.0 2.6E-33 5.7E-38 331.9 28.3 306 301-711 14-336 (470)
41 KOG0348 ATP-dependent RNA heli 100.0 7E-33 1.5E-37 306.9 23.6 378 282-719 142-567 (708)
42 KOG0340 ATP-dependent RNA heli 100.0 4.2E-33 9E-38 296.2 21.0 320 296-710 28-363 (442)
43 PRK11057 ATP-dependent DNA hel 100.0 7.1E-33 1.5E-37 336.7 25.5 305 300-711 27-346 (607)
44 PLN03137 ATP-dependent DNA hel 100.0 1.8E-32 3.8E-37 335.2 26.2 308 299-711 461-790 (1195)
45 KOG0335 ATP-dependent RNA heli 100.0 4.2E-33 9E-38 313.6 18.1 318 292-706 91-442 (482)
46 COG1201 Lhr Lhr-like helicases 100.0 7.7E-32 1.7E-36 324.4 28.7 387 285-766 10-438 (814)
47 KOG0949 Predicted helicase, DE 100.0 3E-32 6.4E-37 318.0 19.0 636 48-726 247-1067(1330)
48 KOG0326 ATP-dependent RNA heli 100.0 2.2E-32 4.7E-37 286.3 15.6 322 288-709 98-430 (459)
49 PRK09751 putative ATP-dependen 100.0 7.9E-32 1.7E-36 342.8 23.2 310 318-699 1-374 (1490)
50 TIGR01389 recQ ATP-dependent D 100.0 1E-31 2.2E-36 327.2 23.4 304 300-711 15-334 (591)
51 KOG0347 RNA helicase [RNA proc 100.0 1.6E-32 3.5E-37 304.9 14.7 350 278-709 180-571 (731)
52 COG1111 MPH1 ERCC4-like helica 100.0 1.9E-30 4.2E-35 289.2 30.1 382 299-708 16-481 (542)
53 TIGR00580 mfd transcription-re 100.0 1.6E-30 3.5E-35 323.4 30.6 298 298-708 452-770 (926)
54 KOG0952 DNA/RNA helicase MER3/ 100.0 3.7E-31 8.1E-36 312.4 22.8 480 303-855 116-683 (1230)
55 KOG0332 ATP-dependent RNA heli 100.0 5.7E-31 1.2E-35 281.3 19.3 325 289-707 104-442 (477)
56 KOG0336 ATP-dependent RNA heli 100.0 1.9E-31 4.1E-36 286.7 14.7 328 289-711 234-575 (629)
57 KOG0339 ATP-dependent RNA heli 100.0 2.3E-30 5E-35 284.9 20.3 321 296-710 244-577 (731)
58 PRK10689 transcription-repair 100.0 1.1E-29 2.4E-34 322.3 25.6 298 297-707 600-918 (1147)
59 PRK10917 ATP-dependent DNA hel 100.0 2.1E-29 4.5E-34 309.6 26.1 298 298-706 262-587 (681)
60 TIGR00643 recG ATP-dependent D 100.0 3.6E-29 7.8E-34 305.6 27.6 300 298-706 236-564 (630)
61 KOG0354 DEAD-box like helicase 100.0 6E-29 1.3E-33 292.4 28.3 386 295-708 59-529 (746)
62 KOG0350 DEAD-box ATP-dependent 100.0 7E-30 1.5E-34 281.8 17.9 321 299-709 160-541 (620)
63 TIGR01587 cas3_core CRISPR-ass 100.0 3.5E-29 7.6E-34 287.4 23.4 300 315-709 1-337 (358)
64 TIGR02621 cas3_GSU0051 CRISPR- 100.0 8.6E-29 1.9E-33 299.7 26.7 346 299-744 16-428 (844)
65 KOG0341 DEAD-box protein abstr 100.0 6.5E-30 1.4E-34 273.2 12.9 316 298-709 193-529 (610)
66 KOG0327 Translation initiation 100.0 2.7E-29 5.8E-34 271.7 16.3 325 288-712 39-374 (397)
67 KOG0346 RNA helicase [RNA proc 100.0 4.4E-29 9.5E-34 271.6 16.8 312 294-708 38-410 (569)
68 KOG4284 DEAD box protein [Tran 100.0 2.1E-28 4.5E-33 275.6 17.4 323 293-708 43-379 (980)
69 KOG0344 ATP-dependent RNA heli 100.0 4.8E-28 1E-32 274.0 19.9 329 290-709 151-496 (593)
70 PRK13766 Hef nuclease; Provisi 100.0 5.9E-27 1.3E-31 294.7 30.2 383 296-709 13-480 (773)
71 PHA02558 uvsW UvsW helicase; P 100.0 2E-27 4.4E-32 283.3 23.3 317 298-700 114-443 (501)
72 TIGR03158 cas3_cyano CRISPR-as 99.9 1.8E-26 3.8E-31 263.7 25.4 301 303-694 2-357 (357)
73 KOG0334 RNA helicase [RNA proc 99.9 2.5E-27 5.5E-32 283.4 18.5 336 278-708 364-720 (997)
74 KOG0951 RNA helicase BRR2, DEA 99.9 3.4E-26 7.4E-31 273.0 26.6 430 303-806 314-836 (1674)
75 KOG0921 Dosage compensation co 99.9 1.7E-28 3.6E-33 284.2 2.2 572 285-896 393-967 (1282)
76 COG1205 Distinct helicase fami 99.9 6.2E-26 1.4E-30 280.9 23.9 333 294-706 66-420 (851)
77 KOG0948 Nuclear exosomal RNA h 99.9 2E-26 4.3E-31 263.6 17.1 362 298-708 129-539 (1041)
78 COG0514 RecQ Superfamily II DN 99.9 1E-25 2.2E-30 263.0 22.5 302 303-711 22-340 (590)
79 KOG0947 Cytoplasmic exosomal R 99.9 1.2E-25 2.5E-30 263.1 20.7 367 296-707 295-722 (1248)
80 PRK09401 reverse gyrase; Revie 99.9 3.8E-25 8.2E-30 281.7 24.4 290 280-663 62-410 (1176)
81 COG4581 Superfamily II RNA hel 99.9 4.3E-25 9.3E-30 269.4 20.5 368 295-706 116-535 (1041)
82 TIGR00603 rad25 DNA repair hel 99.9 1E-23 2.2E-28 253.6 27.7 320 296-709 253-608 (732)
83 KOG0337 ATP-dependent RNA heli 99.9 6.4E-25 1.4E-29 238.4 15.0 327 287-708 33-368 (529)
84 PRK14701 reverse gyrase; Provi 99.9 7.4E-24 1.6E-28 275.0 24.6 336 280-710 61-458 (1638)
85 TIGR01054 rgy reverse gyrase. 99.9 7E-23 1.5E-27 261.4 26.2 287 285-665 65-411 (1171)
86 COG1061 SSL2 DNA or RNA helica 99.9 3.6E-22 7.8E-27 233.9 26.4 326 295-698 33-378 (442)
87 PRK05580 primosome assembly pr 99.9 3.8E-22 8.3E-27 244.7 26.1 357 298-704 144-545 (679)
88 PRK09694 helicase Cas3; Provis 99.9 3.9E-22 8.4E-27 246.4 26.1 325 297-697 285-663 (878)
89 PRK12898 secA preprotein trans 99.9 3.7E-21 7.9E-26 229.2 30.3 106 577-709 473-587 (656)
90 TIGR03714 secA2 accessory Sec 99.9 2.9E-21 6.3E-26 232.5 28.8 106 575-708 422-537 (762)
91 KOG0352 ATP-dependent DNA heli 99.9 3E-22 6.6E-27 217.2 17.8 323 297-712 20-366 (641)
92 COG1200 RecG RecG-like helicas 99.9 2.4E-22 5.2E-27 233.8 18.2 309 290-709 252-592 (677)
93 PRK09200 preprotein translocas 99.9 1.2E-21 2.6E-26 237.9 25.1 106 576-708 427-541 (790)
94 COG4098 comFA Superfamily II D 99.9 3E-21 6.5E-26 205.5 24.7 294 304-704 107-412 (441)
95 TIGR00963 secA preprotein tran 99.9 2.4E-21 5.3E-26 231.7 26.7 106 576-708 404-517 (745)
96 TIGR00595 priA primosomal prot 99.9 1.2E-22 2.6E-27 240.9 14.8 333 317-704 1-377 (505)
97 PRK11448 hsdR type I restricti 99.9 3.5E-21 7.6E-26 244.3 27.7 355 298-706 413-813 (1123)
98 COG1197 Mfd Transcription-repa 99.9 4.7E-21 1E-25 234.2 27.3 313 284-708 580-913 (1139)
99 KOG0950 DNA polymerase theta/e 99.9 2.4E-21 5.2E-26 229.6 22.8 331 308-709 235-612 (1008)
100 KOG0351 ATP-dependent DNA heli 99.9 7.1E-22 1.5E-26 243.2 16.5 306 303-713 269-597 (941)
101 PRK04914 ATP-dependent helicas 99.8 4.7E-19 1E-23 220.4 27.2 122 562-707 478-604 (956)
102 KOG0349 Putative DEAD-box RNA 99.8 2.1E-20 4.5E-25 202.9 11.4 301 347-705 287-612 (725)
103 PF07717 OB_NTP_bind: Oligonuc 99.8 9.7E-20 2.1E-24 174.1 7.8 106 887-998 1-114 (114)
104 KOG0353 ATP-dependent DNA heli 99.8 2.9E-18 6.3E-23 183.5 19.0 270 302-663 98-396 (695)
105 KOG0329 ATP-dependent RNA heli 99.8 1.4E-18 3.1E-23 177.8 15.8 168 289-459 56-230 (387)
106 COG1203 CRISPR-associated heli 99.8 1.7E-17 3.8E-22 205.6 20.7 312 298-704 195-546 (733)
107 PRK13104 secA preprotein trans 99.8 2.9E-17 6.3E-22 199.3 21.7 124 296-425 78-213 (896)
108 COG4096 HsdR Type I site-speci 99.8 2.7E-17 6E-22 193.8 19.9 371 298-732 166-572 (875)
109 TIGR00348 hsdR type I site-spe 99.7 8.7E-16 1.9E-20 188.7 26.6 153 295-456 236-402 (667)
110 PF00270 DEAD: DEAD/DEAH box h 99.7 6.2E-17 1.3E-21 165.0 12.4 156 301-461 2-166 (169)
111 PRK12906 secA preprotein trans 99.7 6.4E-16 1.4E-20 187.0 22.3 106 576-708 439-553 (796)
112 cd00268 DEADc DEAD-box helicas 99.7 1.6E-16 3.4E-21 167.5 14.3 159 299-458 22-186 (203)
113 PF04408 HA2: Helicase associa 99.7 5.2E-17 1.1E-21 151.8 8.3 92 759-850 1-102 (102)
114 PRK12904 preprotein translocas 99.7 3.4E-15 7.3E-20 181.5 25.0 107 575-708 428-573 (830)
115 COG1110 Reverse gyrase [DNA re 99.6 3.4E-14 7.3E-19 170.1 24.4 290 280-664 64-418 (1187)
116 PRK13107 preprotein translocas 99.6 2.8E-14 6E-19 173.1 20.7 106 576-708 448-591 (908)
117 PRK12899 secA preprotein trans 99.6 6.2E-14 1.3E-18 170.3 22.3 125 295-425 87-226 (970)
118 KOG0953 Mitochondrial RNA heli 99.6 6.7E-14 1.5E-18 157.8 17.1 276 312-708 190-477 (700)
119 smart00847 HA2 Helicase associ 99.6 6E-15 1.3E-19 135.3 7.3 91 759-850 1-92 (92)
120 COG1198 PriA Primosomal protei 99.5 9.5E-14 2.1E-18 167.6 18.3 355 298-704 198-599 (730)
121 PLN03142 Probable chromatin-re 99.5 1.5E-12 3.2E-17 163.4 27.8 110 576-710 486-601 (1033)
122 TIGR01407 dinG_rel DnaQ family 99.5 1.5E-12 3.2E-17 165.0 25.9 139 566-711 664-821 (850)
123 cd00046 DEXDc DEAD-like helica 99.4 1E-12 2.2E-17 128.0 13.1 137 314-456 1-144 (144)
124 smart00487 DEXDc DEAD-like hel 99.4 1.8E-12 3.9E-17 134.2 14.9 154 297-456 7-170 (201)
125 KOG4150 Predicted ATP-dependen 99.4 3.3E-12 7.2E-17 143.5 17.3 323 290-697 278-628 (1034)
126 cd00079 HELICc Helicase superf 99.4 1E-12 2.2E-17 127.6 10.1 103 576-703 27-130 (131)
127 TIGR00631 uvrb excinuclease AB 99.4 1.4E-12 3E-17 158.9 11.1 124 565-708 429-553 (655)
128 TIGR02562 cas3_yersinia CRISPR 99.4 8.3E-11 1.8E-15 144.4 26.2 98 580-699 759-882 (1110)
129 PF00271 Helicase_C: Helicase 99.4 5E-13 1.1E-17 118.4 4.4 72 608-697 7-78 (78)
130 KOG1123 RNA polymerase II tran 99.3 6.7E-12 1.4E-16 139.8 11.9 312 299-698 303-636 (776)
131 PF07652 Flavi_DEAD: Flaviviru 99.3 1.2E-11 2.6E-16 120.0 11.6 134 312-458 3-138 (148)
132 COG0556 UvrB Helicase subunit 99.3 2.1E-10 4.5E-15 129.9 22.3 109 576-704 445-553 (663)
133 PRK05298 excinuclease ABC subu 99.3 7.3E-12 1.6E-16 153.7 11.7 122 566-707 434-556 (652)
134 PRK07246 bifunctional ATP-depe 99.3 5.3E-10 1.2E-14 140.3 26.5 128 564-704 636-780 (820)
135 PF04851 ResIII: Type III rest 99.3 1.9E-11 4E-16 126.0 11.2 145 299-457 4-183 (184)
136 KOG0385 Chromatin remodeling c 99.2 2.3E-09 5E-14 125.6 26.6 372 300-711 169-602 (971)
137 PRK12326 preprotein translocas 99.2 2.7E-09 5.8E-14 127.5 27.2 116 566-708 415-547 (764)
138 KOG0951 RNA helicase BRR2, DEA 99.2 1.1E-10 2.3E-15 142.0 15.1 321 311-719 1157-1508(1674)
139 smart00490 HELICc helicase sup 99.2 2.7E-11 5.9E-16 107.3 6.0 80 593-697 3-82 (82)
140 PRK12900 secA preprotein trans 99.1 1.5E-10 3.2E-15 141.7 10.9 107 576-709 597-712 (1025)
141 PRK08074 bifunctional ATP-depe 99.1 4.6E-09 1E-13 134.2 23.1 135 564-704 740-890 (928)
142 PRK13103 secA preprotein trans 99.1 3.3E-09 7.1E-14 129.7 19.9 115 305-425 87-213 (913)
143 CHL00122 secA preprotein trans 99.0 1.3E-08 2.8E-13 124.1 22.1 115 304-424 80-206 (870)
144 KOG0387 Transcription-coupled 99.0 9.8E-08 2.1E-12 112.8 26.0 125 564-711 535-661 (923)
145 PRK12903 secA preprotein trans 99.0 8.4E-08 1.8E-12 116.5 25.1 115 566-707 414-538 (925)
146 PF02399 Herpes_ori_bp: Origin 98.9 7.1E-08 1.5E-12 116.4 21.9 321 311-708 47-388 (824)
147 KOG0384 Chromodomain-helicase 98.9 6.5E-08 1.4E-12 118.8 20.5 115 576-712 698-815 (1373)
148 PRK14873 primosome assembly pr 98.9 2E-08 4.2E-13 122.7 15.4 132 321-463 168-310 (665)
149 KOG0390 DNA repair protein, SN 98.8 8.6E-07 1.9E-11 107.6 25.9 104 582-709 599-708 (776)
150 PRK12902 secA preprotein trans 98.8 5.2E-07 1.1E-11 110.1 23.6 117 304-425 89-216 (939)
151 COG4889 Predicted helicase [Ge 98.8 1.3E-07 2.7E-12 112.0 17.1 77 608-702 499-578 (1518)
152 KOG0392 SNF2 family DNA-depend 98.7 4.7E-07 1E-11 111.0 17.7 112 578-711 1341-1457(1549)
153 PRK11747 dinG ATP-dependent DN 98.7 1.8E-06 3.9E-11 107.4 23.2 130 563-704 522-671 (697)
154 COG1199 DinG Rad3-related DNA 98.6 1.7E-06 3.7E-11 107.7 21.5 147 566-722 469-636 (654)
155 TIGR00604 rad3 DNA repair heli 98.6 5.7E-07 1.2E-11 112.4 16.8 136 564-704 510-671 (705)
156 TIGR03117 cas_csf4 CRISPR-asso 98.4 1.4E-06 3E-11 105.5 12.6 62 304-368 7-68 (636)
157 KOG1000 Chromatin remodeling p 98.3 0.00013 2.7E-09 82.9 22.8 82 575-663 490-573 (689)
158 COG0610 Type I site-specific r 98.2 5.1E-05 1.1E-09 97.1 21.2 135 314-456 274-413 (962)
159 PF00176 SNF2_N: SNF2 family N 98.2 5E-06 1.1E-10 92.7 10.7 133 312-456 24-172 (299)
160 KOG0389 SNF2 family DNA-depend 98.2 4.1E-05 8.8E-10 91.2 17.9 113 577-711 777-891 (941)
161 KOG0952 DNA/RNA helicase MER3/ 98.0 1.9E-06 4.2E-11 104.8 2.2 153 314-470 944-1108(1230)
162 TIGR00596 rad1 DNA repair prot 98.0 4.2E-05 9.1E-10 95.4 12.6 66 391-457 7-73 (814)
163 PF13245 AAA_19: Part of AAA d 97.9 2.6E-05 5.6E-10 68.7 7.0 60 306-366 3-62 (76)
164 PF13401 AAA_22: AAA domain; P 97.9 3.2E-05 7E-10 75.2 7.6 119 311-455 2-125 (131)
165 COG0653 SecA Preprotein transl 97.8 0.00066 1.4E-08 83.4 19.4 115 304-424 84-210 (822)
166 PRK12723 flagellar biosynthesi 97.8 0.00017 3.7E-09 83.1 12.6 132 312-466 173-307 (388)
167 KOG1002 Nucleotide excision re 97.7 0.0082 1.8E-07 68.5 22.6 116 573-710 634-751 (791)
168 PF00448 SRP54: SRP54-type pro 97.6 0.00019 4.1E-09 75.4 9.2 128 314-461 2-130 (196)
169 PF02562 PhoH: PhoH-like prote 97.6 0.00013 2.7E-09 76.7 7.2 57 298-357 4-60 (205)
170 COG0553 HepA Superfamily II DN 97.6 0.0027 5.9E-08 81.8 20.4 111 579-711 713-825 (866)
171 PF06862 DUF1253: Protein of u 97.6 0.0032 6.8E-08 73.3 18.6 116 574-711 297-418 (442)
172 KOG1803 DNA helicase [Replicat 97.5 0.0002 4.4E-09 83.7 8.6 62 301-367 188-250 (649)
173 PF13604 AAA_30: AAA domain; P 97.5 0.00027 5.9E-09 74.3 8.0 119 302-455 5-130 (196)
174 PRK12901 secA preprotein trans 97.5 0.00054 1.2E-08 85.4 11.5 104 576-706 627-739 (1112)
175 PRK10536 hypothetical protein; 97.5 0.00042 9E-09 74.9 8.9 59 296-357 57-115 (262)
176 TIGR01447 recD exodeoxyribonuc 97.5 0.00079 1.7E-08 82.0 12.4 137 303-454 150-294 (586)
177 COG1419 FlhF Flagellar GTP-bin 97.4 0.0018 4E-08 73.7 13.5 130 313-466 203-333 (407)
178 KOG0386 Chromatin remodeling c 97.4 0.00062 1.3E-08 83.4 9.9 111 576-711 725-841 (1157)
179 PRK14722 flhF flagellar biosyn 97.3 0.0018 4E-08 74.1 12.7 127 310-461 134-262 (374)
180 PRK10875 recD exonuclease V su 97.3 0.0014 3.1E-08 80.0 11.7 141 299-455 154-301 (615)
181 PRK05703 flhF flagellar biosyn 97.2 0.0032 7E-08 73.9 13.8 129 311-463 219-349 (424)
182 cd00009 AAA The AAA+ (ATPases 97.2 0.003 6.4E-08 61.5 11.4 31 304-334 8-40 (151)
183 PF09848 DUF2075: Uncharacteri 97.2 0.00092 2E-08 76.9 8.8 92 314-425 2-94 (352)
184 PRK11889 flhF flagellar biosyn 97.2 0.0039 8.5E-08 71.2 13.3 124 313-459 241-365 (436)
185 smart00488 DEXDc2 DEAD-like he 97.1 0.00088 1.9E-08 74.8 7.3 68 299-366 9-81 (289)
186 smart00489 DEXDc3 DEAD-like he 97.1 0.00088 1.9E-08 74.8 7.3 68 299-366 9-81 (289)
187 PRK15483 type III restriction- 97.1 0.0014 3.1E-08 82.2 9.7 139 312-458 58-240 (986)
188 PF13307 Helicase_C_2: Helicas 97.1 0.00052 1.1E-08 70.2 4.3 121 576-704 8-147 (167)
189 PRK06526 transposase; Provisio 97.0 0.0088 1.9E-07 65.4 13.7 29 308-336 93-121 (254)
190 PF12340 DUF3638: Protein of u 97.0 0.0046 1E-07 65.7 10.7 135 284-425 10-183 (229)
191 PRK12726 flagellar biosynthesi 96.9 0.0059 1.3E-07 69.6 11.2 131 312-465 205-336 (407)
192 PRK12727 flagellar biosynthesi 96.9 0.0045 9.7E-08 73.3 10.7 129 310-462 347-475 (559)
193 PRK12724 flagellar biosynthesi 96.9 0.0098 2.1E-07 68.8 12.9 123 312-460 222-348 (432)
194 PF07517 SecA_DEAD: SecA DEAD- 96.9 0.00095 2.1E-08 73.0 4.6 103 317-425 94-208 (266)
195 PF05729 NACHT: NACHT domain 96.9 0.0028 6.1E-08 63.8 7.7 59 417-475 84-149 (166)
196 TIGR01448 recD_rel helicase, p 96.8 0.006 1.3E-07 76.5 11.7 127 295-455 320-452 (720)
197 PF05970 PIF1: PIF1-like helic 96.7 0.0058 1.2E-07 70.7 9.6 109 302-435 5-121 (364)
198 PRK14974 cell division protein 96.7 0.0097 2.1E-07 67.6 10.9 125 313-457 140-265 (336)
199 PF13086 AAA_11: AAA domain; P 96.7 0.0034 7.3E-08 67.0 7.0 68 301-368 4-75 (236)
200 TIGR02768 TraA_Ti Ti-type conj 96.6 0.012 2.6E-07 74.1 12.3 122 297-453 351-474 (744)
201 PRK08181 transposase; Validate 96.6 0.026 5.7E-07 62.2 13.5 116 308-467 101-219 (269)
202 PRK04296 thymidine kinase; Pro 96.6 0.014 3.1E-07 61.0 10.9 98 313-440 2-102 (190)
203 PRK13889 conjugal transfer rel 96.6 0.014 2.9E-07 74.8 12.6 125 296-455 344-470 (988)
204 PHA03333 putative ATPase subun 96.5 0.069 1.5E-06 64.8 16.7 163 291-467 163-343 (752)
205 PF00580 UvrD-helicase: UvrD/R 96.5 0.0047 1E-07 69.3 6.5 68 301-371 3-70 (315)
206 PF13872 AAA_34: P-loop contai 96.4 0.019 4E-07 63.4 10.3 140 312-456 61-220 (303)
207 KOG4439 RNA polymerase II tran 96.4 0.15 3.4E-06 61.0 18.1 121 565-709 735-859 (901)
208 PRK07003 DNA polymerase III su 96.3 0.014 3E-07 71.6 9.6 50 402-453 107-156 (830)
209 KOG0391 SNF2 family DNA-depend 96.2 0.024 5.2E-07 70.6 10.9 114 576-711 1275-1390(1958)
210 KOG2340 Uncharacterized conser 96.2 0.54 1.2E-05 54.9 20.8 111 577-709 552-669 (698)
211 PRK14723 flhF flagellar biosyn 96.2 0.043 9.3E-07 68.1 13.1 126 312-462 184-311 (767)
212 PRK14721 flhF flagellar biosyn 96.2 0.042 9.1E-07 64.2 12.2 130 310-463 188-318 (420)
213 PF05127 Helicase_RecD: Helica 96.1 0.0012 2.5E-08 67.8 -0.5 117 317-457 1-124 (177)
214 PRK09183 transposase/IS protei 96.1 0.11 2.4E-06 57.1 14.9 27 310-336 99-125 (259)
215 smart00382 AAA ATPases associa 96.1 0.0092 2E-07 57.4 5.7 23 313-335 2-24 (148)
216 PRK14956 DNA polymerase III su 96.1 0.011 2.5E-07 69.5 7.1 44 409-456 116-159 (484)
217 PRK07994 DNA polymerase III su 96.0 0.015 3.2E-07 71.3 8.1 48 403-452 108-155 (647)
218 TIGR00376 DNA helicase, putati 96.0 0.013 2.8E-07 72.5 7.6 65 299-368 159-223 (637)
219 PRK06731 flhF flagellar biosyn 95.9 0.083 1.8E-06 58.2 12.7 126 312-461 74-201 (270)
220 PRK06995 flhF flagellar biosyn 95.9 0.086 1.9E-06 62.6 13.5 127 311-462 254-382 (484)
221 PRK12323 DNA polymerase III su 95.9 0.043 9.3E-07 66.6 11.0 50 403-454 113-162 (700)
222 PF01695 IstB_IS21: IstB-like 95.9 0.018 3.8E-07 59.7 6.7 118 308-467 42-160 (178)
223 TIGR03420 DnaA_homol_Hda DnaA 95.8 0.067 1.4E-06 57.2 11.0 24 312-335 37-60 (226)
224 PRK14960 DNA polymerase III su 95.7 0.022 4.7E-07 69.3 7.6 42 410-453 114-155 (702)
225 KOG1802 RNA helicase nonsense 95.7 0.019 4.1E-07 68.0 6.8 65 300-368 412-476 (935)
226 PRK14957 DNA polymerase III su 95.7 0.02 4.4E-07 69.0 7.4 50 402-453 107-156 (546)
227 PRK08727 hypothetical protein; 95.7 0.039 8.4E-07 59.7 8.9 20 314-333 42-61 (233)
228 PRK08691 DNA polymerase III su 95.7 0.027 5.8E-07 69.0 8.4 43 409-453 114-156 (709)
229 PRK14964 DNA polymerase III su 95.7 0.03 6.4E-07 66.7 8.6 49 403-453 105-153 (491)
230 PRK10416 signal recognition pa 95.7 0.11 2.3E-06 58.9 12.7 129 312-460 113-248 (318)
231 PRK09112 DNA polymerase III su 95.7 0.045 9.8E-07 62.8 9.7 51 402-454 129-179 (351)
232 PF13173 AAA_14: AAA domain 95.7 0.044 9.6E-07 53.3 8.3 25 312-336 1-25 (128)
233 PRK14961 DNA polymerase III su 95.7 0.025 5.5E-07 65.4 7.6 50 402-453 107-156 (363)
234 TIGR02640 gas_vesic_GvpN gas v 95.6 0.044 9.6E-07 60.4 9.1 31 303-333 11-41 (262)
235 TIGR03499 FlhF flagellar biosy 95.6 0.045 9.8E-07 61.0 9.2 89 312-423 193-281 (282)
236 PRK06835 DNA replication prote 95.6 0.062 1.3E-06 61.1 10.4 116 312-466 182-298 (329)
237 PRK07952 DNA replication prote 95.6 0.26 5.7E-06 53.6 14.8 115 314-467 100-215 (244)
238 PRK14949 DNA polymerase III su 95.6 0.028 6.1E-07 70.3 8.1 42 409-452 114-155 (944)
239 COG1875 NYN ribonuclease and A 95.5 0.058 1.2E-06 60.4 9.3 60 295-356 225-286 (436)
240 PRK00771 signal recognition pa 95.5 0.086 1.9E-06 62.1 11.3 124 313-458 95-219 (437)
241 PRK13826 Dtr system oriT relax 95.5 0.076 1.6E-06 68.6 11.6 125 296-455 379-505 (1102)
242 PRK14958 DNA polymerase III su 95.5 0.03 6.4E-07 67.4 7.5 43 409-453 114-156 (509)
243 COG3587 Restriction endonuclea 95.4 0.065 1.4E-06 65.5 10.0 52 634-703 483-537 (985)
244 COG1484 DnaC DNA replication p 95.4 0.24 5.1E-06 54.3 13.5 118 306-466 98-218 (254)
245 PRK08903 DnaA regulatory inact 95.4 0.074 1.6E-06 57.1 9.5 24 312-335 41-64 (227)
246 KOG0391 SNF2 family DNA-depend 95.3 0.05 1.1E-06 67.9 8.7 148 301-456 618-775 (1958)
247 PRK14952 DNA polymerase III su 95.3 0.065 1.4E-06 65.3 9.8 48 404-453 108-155 (584)
248 TIGR00064 ftsY signal recognit 95.2 0.1 2.2E-06 57.8 10.3 128 312-460 71-206 (272)
249 PRK00149 dnaA chromosomal repl 95.2 0.16 3.5E-06 60.5 12.8 36 314-352 149-184 (450)
250 COG1444 Predicted P-loop ATPas 95.2 0.24 5.1E-06 61.2 13.9 131 304-457 221-357 (758)
251 TIGR00678 holB DNA polymerase 95.1 0.054 1.2E-06 56.4 7.4 48 403-452 85-132 (188)
252 PRK05642 DNA replication initi 95.1 0.075 1.6E-06 57.5 8.6 22 314-336 46-67 (234)
253 PRK08116 hypothetical protein; 95.1 0.14 3E-06 56.7 10.8 27 313-340 114-140 (268)
254 TIGR01425 SRP54_euk signal rec 95.0 0.14 3.1E-06 59.9 11.0 123 313-456 100-224 (429)
255 PRK07764 DNA polymerase III su 95.0 0.069 1.5E-06 67.6 9.0 44 408-453 114-157 (824)
256 PRK12402 replication factor C 95.0 0.097 2.1E-06 59.6 9.6 33 303-335 24-58 (337)
257 PRK06893 DNA replication initi 95.0 0.11 2.3E-06 56.2 9.3 24 312-335 38-61 (229)
258 PRK00411 cdc6 cell division co 95.0 0.12 2.7E-06 60.2 10.7 22 313-334 55-76 (394)
259 PRK14969 DNA polymerase III su 94.9 0.058 1.3E-06 65.3 7.9 49 403-453 108-156 (527)
260 PRK08451 DNA polymerase III su 94.9 0.07 1.5E-06 64.2 8.4 43 409-453 112-154 (535)
261 TIGR03015 pepcterm_ATPase puta 94.9 0.092 2E-06 57.7 8.9 22 313-334 43-64 (269)
262 PHA02244 ATPase-like protein 94.9 0.14 3E-06 58.5 10.3 33 302-334 108-140 (383)
263 PRK10867 signal recognition pa 94.9 0.16 3.5E-06 59.7 11.1 126 313-457 100-226 (433)
264 PF13177 DNA_pol3_delta2: DNA 94.9 0.048 1E-06 55.5 6.0 53 402-456 90-142 (162)
265 PRK06645 DNA polymerase III su 94.9 0.064 1.4E-06 64.4 7.9 39 402-442 116-154 (507)
266 PRK14087 dnaA chromosomal repl 94.9 0.19 4.1E-06 59.8 11.7 47 314-364 142-188 (450)
267 PRK12900 secA preprotein trans 94.8 0.034 7.4E-07 69.9 5.5 115 306-425 144-269 (1025)
268 PRK14963 DNA polymerase III su 94.8 0.042 9.1E-07 66.0 6.1 45 406-452 108-152 (504)
269 PF03354 Terminase_1: Phage Te 94.8 0.074 1.6E-06 63.9 8.2 136 314-456 23-164 (477)
270 PRK13833 conjugal transfer pro 94.8 0.042 9.2E-07 62.0 5.7 54 302-358 133-186 (323)
271 PRK09111 DNA polymerase III su 94.7 0.15 3.2E-06 62.6 10.7 50 402-453 120-169 (598)
272 PHA03368 DNA packaging termina 94.7 0.44 9.5E-06 57.9 14.1 159 291-466 235-400 (738)
273 PRK14959 DNA polymerase III su 94.7 0.071 1.5E-06 65.0 7.8 32 304-335 26-60 (624)
274 PRK14962 DNA polymerase III su 94.7 0.076 1.6E-06 63.3 7.8 30 306-335 26-58 (472)
275 PRK14951 DNA polymerase III su 94.7 0.1 2.2E-06 64.0 9.0 50 402-453 112-161 (618)
276 PRK07471 DNA polymerase III su 94.6 0.16 3.5E-06 58.6 10.2 62 393-456 120-181 (365)
277 TIGR00959 ffh signal recogniti 94.6 0.21 4.5E-06 58.7 11.2 125 314-457 100-225 (428)
278 TIGR02782 TrbB_P P-type conjug 94.6 0.058 1.3E-06 60.6 6.4 94 302-424 121-214 (299)
279 TIGR02928 orc1/cdc6 family rep 94.6 0.18 4E-06 58.1 10.7 25 313-338 40-64 (365)
280 PRK12377 putative replication 94.6 0.41 8.9E-06 52.2 12.5 22 313-334 101-122 (248)
281 PRK14965 DNA polymerase III su 94.5 0.082 1.8E-06 64.8 7.9 50 402-453 107-156 (576)
282 TIGR00362 DnaA chromosomal rep 94.5 0.19 4.1E-06 59.1 10.7 37 314-353 137-173 (405)
283 cd01124 KaiC KaiC is a circadi 94.5 0.057 1.2E-06 55.8 5.6 46 315-366 1-46 (187)
284 PRK08084 DNA replication initi 94.4 0.12 2.5E-06 56.1 8.0 22 313-334 45-66 (235)
285 PF05621 TniB: Bacterial TniB 94.4 0.098 2.1E-06 58.0 7.3 122 314-456 62-189 (302)
286 PTZ00112 origin recognition co 94.3 0.26 5.6E-06 61.5 11.3 23 315-338 783-805 (1164)
287 PRK11054 helD DNA helicase IV; 94.3 0.19 4.1E-06 62.7 10.5 98 287-406 185-282 (684)
288 COG3421 Uncharacterized protei 94.3 0.25 5.3E-06 58.5 10.5 134 319-457 3-166 (812)
289 PRK11331 5-methylcytosine-spec 94.3 0.14 3E-06 60.0 8.5 32 303-334 184-215 (459)
290 PRK05563 DNA polymerase III su 94.3 0.12 2.6E-06 63.1 8.5 39 402-442 107-145 (559)
291 TIGR02881 spore_V_K stage V sp 94.3 0.23 4.9E-06 54.7 10.0 22 313-334 42-63 (261)
292 KOG1805 DNA replication helica 94.2 0.083 1.8E-06 65.4 6.7 118 300-425 672-807 (1100)
293 TIGR02760 TraI_TIGR conjugativ 94.2 0.3 6.5E-06 67.7 12.9 137 297-455 428-566 (1960)
294 PF00004 AAA: ATPase family as 94.2 0.046 9.9E-07 52.7 3.8 18 316-333 1-18 (132)
295 PRK06921 hypothetical protein; 94.1 0.28 6E-06 54.2 10.3 27 312-339 116-142 (266)
296 KOG0388 SNF2 family DNA-depend 94.1 0.27 5.9E-06 58.9 10.4 114 576-711 1043-1157(1185)
297 PRK12901 secA preprotein trans 94.1 0.072 1.6E-06 67.2 6.1 116 305-425 174-301 (1112)
298 PRK05896 DNA polymerase III su 94.1 0.099 2.1E-06 63.5 7.1 50 402-453 107-156 (605)
299 PF00308 Bac_DnaA: Bacterial d 94.1 0.19 4E-06 53.9 8.6 104 314-457 35-141 (219)
300 PRK08939 primosomal protein Dn 94.1 0.53 1.1E-05 53.1 12.5 113 312-465 155-269 (306)
301 COG1474 CDC6 Cdc6-related prot 94.0 0.15 3.3E-06 58.8 8.2 28 315-343 44-71 (366)
302 PHA02533 17 large terminase pr 93.9 0.99 2.1E-05 54.8 15.2 156 296-465 57-219 (534)
303 PRK14948 DNA polymerase III su 93.9 0.13 2.9E-06 63.3 8.0 48 402-451 109-156 (620)
304 cd03115 SRP The signal recogni 93.9 0.45 9.7E-06 48.7 10.7 124 315-458 2-126 (173)
305 cd01120 RecA-like_NTPases RecA 93.9 0.22 4.7E-06 49.6 8.2 23 315-337 1-23 (165)
306 PRK05707 DNA polymerase III su 93.8 0.091 2E-06 59.8 5.7 51 402-454 94-144 (328)
307 PRK14950 DNA polymerase III su 93.8 0.11 2.4E-06 63.8 7.0 47 404-452 110-156 (585)
308 TIGR02397 dnaX_nterm DNA polym 93.7 0.4 8.7E-06 55.0 11.1 49 401-451 104-152 (355)
309 PRK14955 DNA polymerase III su 93.7 0.23 4.9E-06 58.3 9.0 47 403-451 116-162 (397)
310 PRK07133 DNA polymerase III su 93.7 0.13 2.8E-06 63.7 7.2 51 401-453 105-155 (725)
311 PHA02544 44 clamp loader, smal 93.6 0.35 7.6E-06 54.6 10.2 29 305-333 32-63 (316)
312 PF05496 RuvB_N: Holliday junc 93.6 0.28 6E-06 52.2 8.5 20 314-333 51-70 (233)
313 PF01637 Arch_ATPase: Archaeal 93.6 0.11 2.4E-06 55.2 5.8 28 304-331 9-38 (234)
314 PRK07940 DNA polymerase III su 93.6 0.37 8.1E-06 56.2 10.4 51 402-455 105-155 (394)
315 KOG1131 RNA polymerase II tran 93.6 0.39 8.4E-06 55.9 10.1 59 302-360 24-84 (755)
316 COG3973 Superfamily I DNA and 93.5 0.1 2.2E-06 61.8 5.6 67 299-366 213-280 (747)
317 CHL00181 cbbX CbbX; Provisiona 93.5 0.21 4.5E-06 55.9 7.9 23 313-335 59-81 (287)
318 PRK14088 dnaA chromosomal repl 93.5 0.84 1.8E-05 54.2 13.4 37 314-353 131-167 (440)
319 PRK00440 rfc replication facto 93.5 0.61 1.3E-05 52.5 11.9 19 315-333 40-58 (319)
320 TIGR02880 cbbX_cfxQ probable R 93.5 0.17 3.6E-06 56.5 7.1 22 313-334 58-79 (284)
321 PRK14953 DNA polymerase III su 93.5 0.41 8.9E-06 57.4 10.8 49 401-451 106-154 (486)
322 TIGR01547 phage_term_2 phage t 93.4 0.37 8E-06 56.4 10.3 134 314-457 2-141 (396)
323 PRK06647 DNA polymerase III su 93.4 0.19 4E-06 61.4 7.9 34 406-441 111-144 (563)
324 COG0470 HolB ATPase involved i 93.4 0.14 3E-06 57.9 6.4 53 400-454 95-147 (325)
325 KOG0989 Replication factor C, 93.4 0.26 5.7E-06 54.2 8.0 44 411-456 126-169 (346)
326 PRK13851 type IV secretion sys 93.3 0.086 1.9E-06 60.2 4.4 48 305-358 154-201 (344)
327 PRK06620 hypothetical protein; 93.1 0.18 3.9E-06 53.8 6.4 38 414-456 85-122 (214)
328 TIGR03345 VI_ClpV1 type VI sec 92.9 0.49 1.1E-05 60.7 11.0 60 400-465 658-727 (852)
329 PRK13342 recombination factor 92.8 0.37 8.1E-06 56.8 9.1 19 315-333 38-56 (413)
330 PRK08533 flagellar accessory p 92.8 0.27 5.9E-06 53.1 7.3 29 310-338 21-49 (230)
331 PRK13894 conjugal transfer ATP 92.8 0.18 4E-06 57.0 6.2 55 301-358 136-190 (319)
332 KOG1132 Helicase of the DEAD s 92.7 0.4 8.7E-06 59.2 9.1 159 564-724 549-738 (945)
333 PRK14971 DNA polymerase III su 92.7 0.39 8.5E-06 59.3 9.3 51 402-455 109-159 (614)
334 KOG2373 Predicted mitochondria 92.6 0.038 8.2E-07 61.0 0.3 36 304-339 264-299 (514)
335 PF00931 NB-ARC: NB-ARC domain 92.6 0.12 2.6E-06 57.3 4.4 68 304-373 6-77 (287)
336 PLN03025 replication factor C 92.6 0.68 1.5E-05 52.6 10.4 22 314-335 35-56 (319)
337 COG2256 MGS1 ATPase related to 92.5 0.44 9.6E-06 54.3 8.5 27 308-334 41-69 (436)
338 PF00437 T2SE: Type II/IV secr 92.5 0.11 2.4E-06 57.4 3.8 47 306-357 120-166 (270)
339 PRK14954 DNA polymerase III su 92.4 0.28 6E-06 60.4 7.4 48 404-453 117-164 (620)
340 PRK13900 type IV secretion sys 92.4 0.15 3.3E-06 58.1 4.9 47 306-358 153-199 (332)
341 PRK10919 ATP-dependent DNA hel 92.3 0.24 5.2E-06 62.0 6.9 105 301-424 5-112 (672)
342 PRK14712 conjugal transfer nic 92.3 0.8 1.7E-05 61.5 11.8 124 300-455 837-967 (1623)
343 PRK07399 DNA polymerase III su 92.3 0.98 2.1E-05 51.1 11.2 59 394-455 104-162 (314)
344 PRK08769 DNA polymerase III su 92.3 0.62 1.4E-05 52.7 9.5 53 401-455 100-152 (319)
345 PRK09087 hypothetical protein; 92.3 0.81 1.8E-05 49.3 10.0 19 313-331 44-62 (226)
346 PRK12422 chromosomal replicati 92.2 0.43 9.3E-06 56.6 8.6 35 314-353 142-176 (445)
347 PRK06871 DNA polymerase III su 92.2 0.35 7.6E-06 54.8 7.4 52 402-455 95-146 (325)
348 COG4962 CpaF Flp pilus assembl 92.1 0.23 4.9E-06 55.7 5.6 51 304-360 164-214 (355)
349 TIGR03878 thermo_KaiC_2 KaiC d 92.1 0.27 5.8E-06 54.1 6.2 29 310-338 33-61 (259)
350 PRK10865 protein disaggregatio 92.0 1.1 2.3E-05 57.7 12.5 121 315-466 600-730 (857)
351 PRK08058 DNA polymerase III su 92.0 0.34 7.4E-06 55.3 7.2 50 403-454 99-148 (329)
352 PF01443 Viral_helicase1: Vira 92.0 0.11 2.3E-06 55.8 2.9 20 316-335 1-20 (234)
353 PRK14970 DNA polymerase III su 91.9 0.5 1.1E-05 54.7 8.6 30 304-333 27-59 (367)
354 PRK06067 flagellar accessory p 91.9 0.34 7.4E-06 52.3 6.7 29 310-338 22-50 (234)
355 PRK04195 replication factor C 91.9 0.98 2.1E-05 54.4 11.2 22 313-334 39-60 (482)
356 cd01130 VirB11-like_ATPase Typ 91.7 0.23 5E-06 51.6 4.9 29 303-331 15-43 (186)
357 PRK14086 dnaA chromosomal repl 91.3 0.65 1.4E-05 56.6 8.8 45 314-362 315-359 (617)
358 COG4626 Phage terminase-like p 91.1 1.3 2.8E-05 52.8 10.7 152 296-456 59-225 (546)
359 PRK11823 DNA repair protein Ra 91.1 0.3 6.6E-06 58.0 5.6 88 310-425 77-167 (446)
360 PRK13709 conjugal transfer nic 91.0 1.4 3.1E-05 60.0 12.2 125 299-455 968-1099(1747)
361 COG2812 DnaX DNA polymerase II 90.9 0.21 4.4E-06 59.7 3.9 53 402-458 107-159 (515)
362 PRK05973 replicative DNA helic 90.4 0.34 7.4E-06 52.4 4.8 48 289-338 42-89 (237)
363 TIGR02524 dot_icm_DotB Dot/Icm 90.3 0.43 9.4E-06 54.9 5.9 31 307-338 127-158 (358)
364 TIGR01074 rep ATP-dependent DN 90.3 0.56 1.2E-05 58.9 7.4 105 302-425 5-112 (664)
365 TIGR02760 TraI_TIGR conjugativ 90.3 1.3 2.8E-05 61.7 11.3 123 298-455 1019-1149(1960)
366 PF13555 AAA_29: P-loop contai 90.2 0.2 4.3E-06 42.3 2.2 18 313-330 23-40 (62)
367 COG1435 Tdk Thymidine kinase [ 90.2 1.4 3.1E-05 45.7 8.7 118 313-459 4-121 (201)
368 PRK13341 recombination factor 90.1 0.82 1.8E-05 57.4 8.5 21 314-334 53-73 (725)
369 TIGR03346 chaperone_ClpB ATP-d 90.1 2 4.4E-05 55.4 12.2 48 415-464 668-725 (852)
370 PF06745 KaiC: KaiC; InterPro 90.1 0.51 1.1E-05 50.6 5.9 40 311-352 17-56 (226)
371 COG2804 PulE Type II secretory 90.0 0.37 8E-06 56.8 4.9 33 302-334 246-279 (500)
372 TIGR01075 uvrD DNA helicase II 89.9 0.47 1E-05 60.0 6.3 86 301-406 7-92 (715)
373 PRK06090 DNA polymerase III su 89.9 1.8 3.9E-05 49.0 10.2 52 402-455 96-147 (319)
374 TIGR02788 VirB11 P-type DNA tr 89.9 0.35 7.5E-06 54.7 4.6 26 306-331 137-162 (308)
375 TIGR02639 ClpA ATP-dependent C 89.9 1.6 3.5E-05 55.3 11.0 36 298-333 183-223 (731)
376 PRK06305 DNA polymerase III su 89.8 0.71 1.5E-05 55.0 7.3 31 305-335 28-61 (451)
377 KOG2228 Origin recognition com 89.8 8.6 0.00019 43.3 14.8 129 312-458 48-183 (408)
378 PF03237 Terminase_6: Terminas 89.7 2.4 5.1E-05 48.4 11.4 130 317-456 1-137 (384)
379 cd01393 recA_like RecA is a b 89.7 0.42 9.1E-06 51.1 4.8 29 310-338 16-44 (226)
380 PRK07993 DNA polymerase III su 89.7 0.61 1.3E-05 53.3 6.3 54 400-455 94-147 (334)
381 PRK06964 DNA polymerase III su 89.5 0.66 1.4E-05 53.0 6.4 60 394-455 112-171 (342)
382 TIGR02525 plasmid_TraJ plasmid 89.4 0.58 1.3E-05 54.1 5.9 41 311-354 147-187 (372)
383 TIGR00635 ruvB Holliday juncti 89.4 1.2 2.6E-05 50.1 8.4 20 314-333 31-50 (305)
384 cd01129 PulE-GspE PulE/GspE Th 89.3 0.46 1E-05 52.4 4.9 30 303-332 69-99 (264)
385 PTZ00293 thymidine kinase; Pro 89.3 1.5 3.2E-05 46.5 8.4 27 312-338 3-29 (211)
386 PHA00729 NTP-binding motif con 89.2 0.68 1.5E-05 49.5 5.9 21 314-334 18-38 (226)
387 PRK05564 DNA polymerase III su 89.2 1.4 2.9E-05 50.0 8.7 46 406-453 85-130 (313)
388 PRK00080 ruvB Holliday junctio 89.1 1.2 2.6E-05 50.8 8.2 21 313-333 51-71 (328)
389 COG1618 Predicted nucleotide k 88.9 1.6 3.5E-05 44.0 7.7 32 412-443 98-129 (179)
390 PRK04841 transcriptional regul 88.9 1.1 2.3E-05 58.4 8.7 34 302-335 18-54 (903)
391 COG3267 ExeA Type II secretory 88.7 1.7 3.7E-05 46.9 8.4 59 306-369 43-102 (269)
392 PF13207 AAA_17: AAA domain; P 88.7 0.34 7.4E-06 46.1 2.9 19 315-333 1-19 (121)
393 TIGR02655 circ_KaiC circadian 88.5 0.87 1.9E-05 54.8 6.9 51 310-366 260-310 (484)
394 COG0541 Ffh Signal recognition 88.5 4.1 8.9E-05 47.3 11.7 134 314-466 101-236 (451)
395 cd01121 Sms Sms (bacterial rad 88.4 0.64 1.4E-05 53.8 5.4 29 310-338 79-107 (372)
396 TIGR02974 phageshock_pspF psp 88.3 2.3 5E-05 48.5 9.7 28 304-331 13-40 (329)
397 TIGR02639 ClpA ATP-dependent C 88.0 1.9 4.1E-05 54.7 9.7 35 400-440 543-577 (731)
398 COG2805 PilT Tfp pilus assembl 88.0 0.32 6.9E-06 53.4 2.4 38 312-353 124-161 (353)
399 COG0466 Lon ATP-dependent Lon 88.0 4.9 0.00011 49.4 12.4 42 397-440 402-445 (782)
400 TIGR03877 thermo_KaiC_1 KaiC d 87.9 0.83 1.8E-05 49.5 5.6 51 310-366 18-68 (237)
401 TIGR01073 pcrA ATP-dependent D 87.8 1.3 2.9E-05 56.1 8.3 104 301-424 7-113 (726)
402 COG0552 FtsY Signal recognitio 87.7 5.8 0.00013 44.7 12.0 125 313-457 139-270 (340)
403 cd01131 PilT Pilus retraction 87.7 0.38 8.3E-06 50.6 2.8 36 314-353 2-37 (198)
404 PRK11773 uvrD DNA-dependent he 87.7 1.1 2.3E-05 56.9 7.2 104 300-424 11-118 (721)
405 COG0593 DnaA ATPase involved i 87.7 2.1 4.7E-05 49.7 9.0 37 313-352 113-149 (408)
406 COG1074 RecB ATP-dependent exo 87.6 0.67 1.5E-05 61.4 5.6 63 310-372 13-75 (1139)
407 PRK03992 proteasome-activating 87.6 2.3 5E-05 49.7 9.4 20 313-332 165-184 (389)
408 TIGR00767 rho transcription te 87.6 0.39 8.5E-06 55.5 2.9 28 310-338 165-192 (415)
409 CHL00095 clpC Clp protease ATP 87.6 1.8 3.9E-05 55.6 9.3 54 401-460 602-665 (821)
410 KOG2028 ATPase related to the 87.2 2 4.3E-05 48.4 7.8 29 306-334 153-183 (554)
411 PF12846 AAA_10: AAA-like doma 87.1 0.72 1.6E-05 51.2 4.7 42 313-359 1-42 (304)
412 TIGR02785 addA_Gpos recombinat 87.0 1.1 2.3E-05 60.2 6.9 133 301-439 5-140 (1232)
413 KOG2036 Predicted P-loop ATPas 86.9 7.5 0.00016 47.2 12.8 125 313-458 275-413 (1011)
414 COG3598 RepA RecA-family ATPas 86.7 2.7 5.8E-05 46.8 8.5 149 304-456 80-242 (402)
415 cd03247 ABCC_cytochrome_bd The 86.7 1.5 3.2E-05 45.1 6.5 23 310-332 25-47 (178)
416 COG0630 VirB11 Type IV secreto 86.6 1 2.2E-05 51.0 5.6 50 301-356 131-180 (312)
417 COG1126 GlnQ ABC-type polar am 86.4 0.36 7.8E-06 50.8 1.7 21 310-330 25-45 (240)
418 CHL00176 ftsH cell division pr 86.3 3.4 7.4E-05 51.3 10.3 21 313-333 216-236 (638)
419 PRK10436 hypothetical protein; 86.2 0.93 2E-05 53.9 5.2 33 304-337 208-241 (462)
420 PF13671 AAA_33: AAA domain; P 86.1 0.57 1.2E-05 45.9 2.9 20 315-334 1-20 (143)
421 COG0467 RAD55 RecA-superfamily 86.0 1.2 2.6E-05 48.9 5.7 57 310-373 20-76 (260)
422 PF05876 Terminase_GpA: Phage 85.9 0.43 9.3E-06 58.3 2.3 67 299-369 17-86 (557)
423 PF12775 AAA_7: P-loop contain 85.9 0.84 1.8E-05 50.6 4.4 26 308-333 28-53 (272)
424 KOG0388 SNF2 family DNA-depend 85.9 1.7 3.6E-05 52.5 6.9 136 310-456 583-733 (1185)
425 COG2255 RuvB Holliday junction 85.9 1.6 3.4E-05 47.9 6.2 19 314-332 53-71 (332)
426 PRK04328 hypothetical protein; 85.9 1.2 2.7E-05 48.6 5.6 29 310-338 20-48 (249)
427 COG1110 Reverse gyrase [DNA re 85.9 1.1 2.4E-05 56.4 5.7 68 576-644 124-191 (1187)
428 cd03221 ABCF_EF-3 ABCF_EF-3 E 85.7 2.4 5.3E-05 42.1 7.2 22 310-331 23-44 (144)
429 TIGR00763 lon ATP-dependent pr 85.7 2.5 5.5E-05 54.0 9.1 22 312-333 346-367 (775)
430 KOG0741 AAA+-type ATPase [Post 85.6 3.6 7.8E-05 48.6 9.2 106 315-461 540-654 (744)
431 PF13238 AAA_18: AAA domain; P 85.5 0.49 1.1E-05 45.2 2.1 17 316-332 1-17 (129)
432 TIGR02655 circ_KaiC circadian 85.5 1.4 3E-05 53.1 6.3 41 310-352 18-58 (484)
433 TIGR02538 type_IV_pilB type IV 85.5 0.92 2E-05 55.6 4.8 34 303-337 305-339 (564)
434 cd01128 rho_factor Transcripti 85.4 0.48 1E-05 51.7 2.1 26 310-336 13-38 (249)
435 TIGR00602 rad24 checkpoint pro 85.4 2.9 6.2E-05 51.7 8.9 23 312-334 109-131 (637)
436 TIGR01420 pilT_fam pilus retra 85.3 0.63 1.4E-05 53.4 3.1 38 312-353 121-158 (343)
437 PRK10917 ATP-dependent DNA hel 85.3 1.7 3.7E-05 54.7 7.1 79 576-657 309-388 (681)
438 cd00267 ABC_ATPase ABC (ATP-bi 85.2 0.77 1.7E-05 46.2 3.4 23 310-332 22-44 (157)
439 PRK13764 ATPase; Provisional 85.2 0.93 2E-05 55.4 4.6 27 311-338 255-281 (602)
440 TIGR01243 CDC48 AAA family ATP 85.2 2.2 4.8E-05 54.2 8.2 21 313-333 487-507 (733)
441 cd00984 DnaB_C DnaB helicase C 85.0 0.65 1.4E-05 50.2 2.9 34 306-339 6-39 (242)
442 TIGR03819 heli_sec_ATPase heli 85.0 1 2.2E-05 51.6 4.6 47 306-358 171-217 (340)
443 PRK13695 putative NTPase; Prov 84.9 3.7 8.1E-05 42.0 8.4 19 315-333 2-20 (174)
444 PRK11034 clpA ATP-dependent Cl 84.8 5.6 0.00012 50.4 11.4 20 313-332 207-226 (758)
445 TIGR03263 guanyl_kin guanylate 84.8 0.68 1.5E-05 47.6 2.8 21 313-333 1-21 (180)
446 cd03228 ABCC_MRP_Like The MRP 84.4 1.5 3.2E-05 44.8 5.1 22 310-331 25-46 (171)
447 PRK10787 DNA-binding ATP-depen 84.4 2.8 6.1E-05 53.4 8.6 33 300-332 328-368 (784)
448 smart00491 HELICc2 helicase su 84.2 1.1 2.5E-05 44.4 4.0 75 624-698 34-128 (142)
449 PRK05917 DNA polymerase III su 83.9 5.7 0.00012 44.3 9.7 53 402-456 83-135 (290)
450 TIGR03117 cas_csf4 CRISPR-asso 83.9 2.7 5.8E-05 51.9 7.8 120 576-705 469-614 (636)
451 COG1221 PspF Transcriptional r 83.9 6.4 0.00014 45.8 10.4 23 310-332 98-120 (403)
452 TIGR02533 type_II_gspE general 83.8 1.2 2.6E-05 53.5 4.6 28 304-331 232-260 (486)
453 KOG0744 AAA+-type ATPase [Post 83.7 0.99 2.1E-05 50.1 3.5 29 308-337 172-200 (423)
454 COG1219 ClpX ATP-dependent pro 83.5 0.59 1.3E-05 51.7 1.7 19 312-330 96-114 (408)
455 TIGR03881 KaiC_arch_4 KaiC dom 83.4 1.9 4E-05 46.3 5.6 30 309-338 16-45 (229)
456 PRK00300 gmk guanylate kinase; 83.4 0.84 1.8E-05 48.0 2.9 23 312-334 4-26 (205)
457 COG2909 MalT ATP-dependent tra 83.3 2.4 5.3E-05 52.7 7.0 36 300-335 21-59 (894)
458 KOG1015 Transcription regulato 83.2 3.7 8E-05 51.3 8.3 126 567-707 1130-1276(1567)
459 TIGR01650 PD_CobS cobaltochela 83.2 1.3 2.9E-05 50.0 4.4 32 304-335 55-86 (327)
460 cd02034 CooC The accessory pro 83.1 7.7 0.00017 37.1 9.0 36 316-354 2-37 (116)
461 KOG2004 Mitochondrial ATP-depe 83.0 5.8 0.00013 48.6 9.7 106 299-440 416-533 (906)
462 PF07728 AAA_5: AAA domain (dy 83.0 0.95 2.1E-05 44.3 2.9 20 315-334 1-20 (139)
463 PRK08699 DNA polymerase III su 83.0 2.1 4.5E-05 48.8 5.9 51 401-453 100-150 (325)
464 PF01580 FtsK_SpoIIIE: FtsK/Sp 83.0 1.3 2.9E-05 46.6 4.2 43 311-354 36-78 (205)
465 TIGR03689 pup_AAA proteasome A 82.9 2.1 4.6E-05 51.5 6.2 18 313-330 216-233 (512)
466 TIGR00631 uvrb excinuclease AB 82.8 2.6 5.7E-05 52.5 7.2 68 298-373 10-81 (655)
467 PRK05580 primosome assembly pr 82.8 1.7 3.6E-05 54.6 5.6 74 577-657 190-263 (679)
468 COG0542 clpA ATP-binding subun 82.5 4.1 9E-05 51.0 8.6 120 314-464 522-651 (786)
469 COG1136 SalX ABC-type antimicr 82.5 0.78 1.7E-05 49.1 2.2 22 310-331 28-49 (226)
470 PHA00149 DNA encapsidation pro 82.4 13 0.00028 40.9 11.2 142 317-466 21-171 (331)
471 cd00071 GMPK Guanosine monopho 82.4 0.9 1.9E-05 44.8 2.4 18 316-333 2-19 (137)
472 cd03246 ABCC_Protease_Secretio 82.2 1.5 3.3E-05 44.9 4.2 22 310-331 25-46 (173)
473 PLN02165 adenylate isopentenyl 82.0 0.98 2.1E-05 51.1 2.8 49 284-332 10-62 (334)
474 TIGR01243 CDC48 AAA family ATP 81.7 2.5 5.5E-05 53.6 6.7 22 311-332 210-231 (733)
475 KOG0780 Signal recognition par 81.6 9.2 0.0002 43.7 10.0 136 312-466 100-237 (483)
476 PRK08233 hypothetical protein; 81.6 1 2.3E-05 46.1 2.7 22 313-334 3-24 (182)
477 PRK14530 adenylate kinase; Pro 81.5 1.1 2.3E-05 47.8 2.9 23 312-334 2-24 (215)
478 PRK14729 miaA tRNA delta(2)-is 81.4 1.1 2.4E-05 50.1 3.0 22 312-333 3-24 (300)
479 TIGR01817 nifA Nif-specific re 81.3 6.1 0.00013 48.2 9.6 28 304-331 210-237 (534)
480 KOG0733 Nuclear AAA ATPase (VC 81.3 1.8 3.9E-05 51.8 4.6 18 313-330 545-562 (802)
481 COG1222 RPT1 ATP-dependent 26S 81.2 7.8 0.00017 44.0 9.3 20 311-330 183-202 (406)
482 PRK11034 clpA ATP-dependent Cl 81.1 2.7 5.9E-05 53.1 6.5 19 315-333 490-508 (758)
483 COG5008 PilU Tfp pilus assembl 81.1 1 2.3E-05 48.5 2.4 40 310-353 124-163 (375)
484 TIGR00595 priA primosomal prot 81.1 2.9 6.3E-05 50.6 6.6 74 577-657 25-98 (505)
485 cd00820 PEPCK_HprK Phosphoenol 81.0 0.92 2E-05 42.8 1.8 23 311-333 13-35 (107)
486 TIGR02784 addA_alphas double-s 81.0 2.4 5.2E-05 56.6 6.4 61 309-371 6-66 (1141)
487 COG3839 MalK ABC-type sugar tr 80.9 0.8 1.7E-05 51.9 1.6 22 310-331 26-47 (338)
488 PRK10078 ribose 1,5-bisphospho 80.8 0.98 2.1E-05 46.9 2.2 21 313-333 2-22 (186)
489 PRK08118 topology modulation p 80.8 0.96 2.1E-05 46.2 2.0 20 314-333 2-21 (167)
490 TIGR01241 FtsH_fam ATP-depende 80.5 4.4 9.5E-05 49.0 7.9 20 314-333 89-108 (495)
491 CHL00195 ycf46 Ycf46; Provisio 80.5 3.4 7.4E-05 49.6 6.8 19 312-330 258-276 (489)
492 PRK09376 rho transcription ter 80.4 2.1 4.6E-05 49.5 4.8 29 310-339 166-194 (416)
493 PRK07261 topology modulation p 80.4 1.3 2.7E-05 45.6 2.7 19 315-333 2-20 (171)
494 COG0513 SrmB Superfamily II DN 80.3 4.1 8.8E-05 49.5 7.5 72 580-657 102-179 (513)
495 TIGR03880 KaiC_arch_3 KaiC dom 80.2 2.8 6E-05 44.9 5.5 28 311-338 14-41 (224)
496 cd00544 CobU Adenosylcobinamid 80.1 1.5 3.2E-05 45.0 3.2 45 316-368 2-46 (169)
497 smart00492 HELICc3 helicase su 80.0 3 6.5E-05 41.4 5.2 79 620-698 33-127 (141)
498 PLN03186 DNA repair protein RA 80.0 2.6 5.6E-05 48.3 5.3 29 310-338 120-148 (342)
499 PF01078 Mg_chelatase: Magnesi 80.0 1.7 3.6E-05 45.9 3.5 28 303-330 12-39 (206)
500 TIGR02322 phosphon_PhnN phosph 79.9 1.3 2.9E-05 45.4 2.8 21 313-333 1-21 (179)
No 1
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=100.00 E-value=8.7e-135 Score=1210.82 Aligned_cols=815 Identities=49% Similarity=0.790 Sum_probs=724.7
Q ss_pred chhHHHHHHHhhhcCCCcccchhccccCcccHHHHHHHHHHhcccccccc--eEEEEecCCCCCCccccccCC--Ccccc
Q 001817 132 NIDEWRWKLTMLLRNKDEQEVVSRAKKDRRDFEQLSALATRMGLHSRQYA--KVVVFSKAPLPNYRSDLDEKR--PQREV 207 (1009)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~--~~~~~ 207 (1009)
++..|.++.++.......+|++....+++.+++.|+++...++.++..+. ...++++.+.|++..+++... ++.+.
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 102 (924)
T KOG0920|consen 23 DSHAWLRDSSSSKEMTDDDEVIRALTQSRLPKNLLEKLIQIARSSSTAKNLMKFHTVSKITEPSRLLDLSPKPMTLQAKL 102 (924)
T ss_pred cccccccCccccccccCcceeehhccccCcccccchHHHHHHHhhhhhhhcccceeeeccCCCCceeeecccccchhhhh
Confidence 78888777775445566689999999999999999999999999866664 678999999999999888875 77777
Q ss_pred ccchhhHHHHHHHHHHHHHHhhccccccccccCCCC--CCCccchhhhHHhhhhhHHHHHHHHHhhHHHHHHHHHHhcCh
Q 001817 208 ILPFGLLREVDAHLKAYLSQKYINASMSSLSNVGST--TNDEGLYEQQEQLVQNSVVRERILRQRSLQMHEKQQAWQESP 285 (1009)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 285 (1009)
....+...+...++.++.+.....+...... ..+. ..|+...+. +.. .+..|..+.
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~~~~~------------------s~~---~~~~~~~s~ 160 (924)
T KOG0920|consen 103 KLKAEAENKAAALVCKLLESLKLVDRNNENL-LLPTTGQKDEPLLKK------------------SIS---RQSEPKKSE 160 (924)
T ss_pred eecccccchhHHHHHHHHHHhccCCCccccc-ccccccccccccCcc------------------hhh---hhchhhhhh
Confidence 8888887788877877765543111111100 0110 111111111 000 556778899
Q ss_pred hhHHHHHhhcCCCCHHHHHHHHHHHHcCCeEEEEecCCCchhhhHHHHHHHHHHHHhcCCceEEEechhHHHHHHHHHHH
Q 001817 286 EGQKMLEFRRSLPSYKERDALLKAISENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSER 365 (1009)
Q Consensus 286 ~~~~l~~~r~~LPi~~~q~~il~~l~~~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~IvvtqPrR~La~qva~r 365 (1009)
.++++++.|.+||++.++++|++++.++++++|+|+||||||||+||+|++..+..+ ..|+|+||||||+.|+++|+|
T Consensus 161 ~~~~~~~~R~~LPa~~~r~~Il~~i~~~qVvvIsGeTGcGKTTQvpQfiLd~~~~~~--~~~~IicTQPRRIsAIsvAeR 238 (924)
T KOG0920|consen 161 SYKEMLRFRESLPAYKMRDTILDAIEENQVVVISGETGCGKTTQVPQFILDEAIESG--AACNIICTQPRRISAISVAER 238 (924)
T ss_pred HHHHHHHHHHhCccHHHHHHHHHHHHhCceEEEeCCCCCCchhhhhHHHHHHHHhcC--CCCeEEecCCchHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999988754 789999999999999999999
Q ss_pred HHHHhCCcccceeeeeeeeccccCCCcEEEEEccHHHHHHHhcCCCCCCccEEEEeCCCcCCCcchHHHHHHHHHcccCC
Q 001817 366 VAAERGEKLGESVGYKVRLEGMKGRDTRLMFCTTGILLRRLLVDRSLRGVTHVIVDEIHERGMNEDFLLIVLKELLPRRP 445 (1009)
Q Consensus 366 va~e~~~~~g~~vGy~vr~e~~~~~~t~Iiv~T~g~Ll~~L~~~~~l~~is~IIIDEaHeR~~~~d~ll~llk~ll~~~~ 445 (1009)
|+.|+++..|..|||++|.++..+..+.++|||+|+||+.|+.++.+.+++|||+||+|||++++|+++.+++.++..+|
T Consensus 239 Va~ER~~~~g~~VGYqvrl~~~~s~~t~L~fcTtGvLLr~L~~~~~l~~vthiivDEVHER~i~~DflLi~lk~lL~~~p 318 (924)
T KOG0920|consen 239 VAKERGESLGEEVGYQVRLESKRSRETRLLFCTTGVLLRRLQSDPTLSGVTHIIVDEVHERSINTDFLLILLKDLLPRNP 318 (924)
T ss_pred HHHHhccccCCeeeEEEeeecccCCceeEEEecHHHHHHHhccCcccccCceeeeeeEEEccCCcccHHHHHHHHhhhCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEeccCCCHHHHHhhhCCCCeeccCCcccceeeEehhhHHHHhhhccCcccccccchhhhHHHHHHHHHHHHhhhh
Q 001817 446 ELRLILMSATLNAELFSSYFGGAPMLHIPGFTYPVRAYFLENILEMTRYRLNTYNQIDDYGQEKSWKMQKQALALRKRKS 525 (1009)
Q Consensus 446 ~lkvIlmSATl~~~~~~~yf~~~pvi~i~g~~~pv~~~yl~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 525 (1009)
++|+|+||||+|++.|++||+++|+++|+|++|||..+|+||++..++|........ .+.+..
T Consensus 319 ~LkvILMSAT~dae~fs~YF~~~pvi~i~grtfpV~~~fLEDil~~~~~~~~~~~~~--~~~~~~--------------- 381 (924)
T KOG0920|consen 319 DLKVILMSATLDAELFSDYFGGCPVITIPGRTFPVKEYFLEDILSKTGYVSEDDSAR--SGPERS--------------- 381 (924)
T ss_pred CceEEEeeeecchHHHHHHhCCCceEeecCCCcchHHHHHHHHHHHhcccccccccc--cccccC---------------
Confidence 999999999999999999999999999999999999999999999998766543222 000000
Q ss_pred hHHHHHHHHHHHhhhcchhhhhhhccccCCCCCcchhhHHHHHHHHHhhcCCCcEEEEcCCHhHHHHHHHHHHcCCCCCC
Q 001817 526 SIASAVEDALEAADFREYSVQTQQSLSCWNPDSIGFNLIEHVLCHIVKKERPGAVLVFMTGWDDINSLKDQLQAHPLLGD 605 (1009)
Q Consensus 526 ~~~~~v~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~~~~i~~l~~~L~~~~~~~~ 605 (1009)
.+. ...+..|.++ ++++++..++.+|+.....|.||||+||+++|..+.+.|..+..+.+
T Consensus 382 --------~~~-----------~~~~~~~~~~-id~~Li~~li~~I~~~~~~GaILVFLPG~~eI~~~~~~L~~~~~f~~ 441 (924)
T KOG0920|consen 382 --------QLR-----------LARLKLWEPE-IDYDLIEDLIEYIDEREFEGAILVFLPGWEEILQLKELLEVNLPFAD 441 (924)
T ss_pred --------ccc-----------cccchhcccc-ccHHHHHHHHHhcccCCCCceEEEEcCCHHHHHHHHHHhhhcccccc
Confidence 000 0002223333 89999999999999998899999999999999999999998777776
Q ss_pred CCCeEEEEecCCCCHHHHHhhcCCCCCCceEEEEecCccccccCCCCeeEEEeCCCCccccccCCCCCCcccccccCHHh
Q 001817 606 PSRVLLLACHGSMASSEQRLIFDKPEDGVRKIVLATNMAETSITINDVVFVIDCGKAKETSYDALNNTPCLLPSWISKAA 685 (1009)
Q Consensus 606 ~~~~~v~~lHs~l~~~er~~v~~~f~~G~~kVLVATniae~GIdIp~V~~VId~g~~k~~~yd~~~~~~~l~~~~iS~as 685 (1009)
..++.+.++||.|+..||+.||...+.|.+|||+||||||+|||||||.||||+|+.|++.||+..+++++...|+|+++
T Consensus 442 ~~~~~ilplHs~~~s~eQ~~VF~~pp~g~RKIIlaTNIAETSITIdDVvyVIDsG~~Ke~~yD~~~~~s~l~~~wvSkAn 521 (924)
T KOG0920|consen 442 SLKFAILPLHSSIPSEEQQAVFKRPPKGTRKIILATNIAETSITIDDVVYVIDSGLVKEKSYDPERKVSCLLLSWVSKAN 521 (924)
T ss_pred ccceEEEeccccCChHHHHHhcCCCCCCcchhhhhhhhHhhcccccCeEEEEecCeeeeeeecccCCcchhheeeccccc
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhcccCCCCCCcEEEecchhhhhhhcc-CCCccccccCchhhhhHhhhcCcCCHHHHHHhhcCCCChhhHHHHHHHH
Q 001817 686 ARQRRGRAGRVQPGECYHLYPRYVYDAFAD-YQLPELLRTPLQSLCLQIKSLQLGSISEFLSRALQPPEPLSVKNAIEYL 764 (1009)
Q Consensus 686 ~~QR~GRAGR~~~G~c~~Lys~~~~~~l~~-~~~PEi~r~~L~~~~L~lk~l~~~~~~~fl~~~l~pP~~~~v~~al~~L 764 (1009)
+.||+|||||+++|.||+||++..|+.+.. +++|||+|.+|+++||++|.++.+++.+||+++++||+..++..|+..|
T Consensus 522 a~QR~GRAGRv~~G~cy~L~~~~~~~~~~~~~q~PEilR~pL~~l~L~iK~l~~~~~~~fLskaldpP~~~~v~~a~~~L 601 (924)
T KOG0920|consen 522 AKQRRGRAGRVRPGICYHLYTRSRYEKLMLAYQLPEILRTPLEELCLHIKVLEQGSIKAFLSKALDPPPADAVDLAIERL 601 (924)
T ss_pred hHHhcccccCccCCeeEEeechhhhhhcccccCChHHHhChHHHhhheeeeccCCCHHHHHHHhcCCCChHHHHHHHHHH
Confidence 999999999999999999999999999777 9999999999999999999999999999999999999999999999999
Q ss_pred HHhccccCCCCcChhhhhcccCCCChhHHHHHHHhhhhCCcchHHHHHHhhcCCCccccCcChHHHHHHHHhhhccCChh
Q 001817 765 QIIGALDENENLTVLGRNLSMLPVEPKLGKMLILGAIFNCLDPVMTVVAGLSVRDPFLMPFDKKDLAESAKAQFSARDYS 844 (1009)
Q Consensus 765 ~~lgald~~~~lT~lG~~ls~lpl~p~~~k~ll~~~~~~c~~~~l~i~a~ls~~~~f~~p~~~~~~~~~~~~~f~~~~~s 844 (1009)
..+|||+.+++||+||++++.||+||++|||+++|+.|+|+||+++|||+|+.++||+.|.++++.++++++.|..+..|
T Consensus 602 ~~igaL~~~e~LT~LG~~la~lPvd~~igK~ll~g~if~cLdp~l~iaa~Ls~k~PF~~~~~~~~~~~~~~~~~~~~~~S 681 (924)
T KOG0920|consen 602 KQIGALDESEELTPLGLHLASLPVDVRIGKLLLFGAIFGCLDPALTIAAALSFKSPFVSPLGKREEADKAKKLLALDSIS 681 (924)
T ss_pred HHhccccCcccchHHHHHHHhCCCccccchhheehhhccccchhhhHHHHhccCCCcccCCCchhHHHHHHHHhccCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999877789
Q ss_pred hHHHHHHHHHHHHHHhhc--ccchhhHHHhcCCHHHHHHHHHHHHHHHHHHHHcCCCCC------CCcCCCCCCCCHHHH
Q 001817 845 DHLALVRAYDGWKDAERH--QSGYEYCWKNFLSAQTLKAIDSLRKQFLFLLKDAGLVDR------NTENCNKWSHDEHLI 916 (1009)
Q Consensus 845 Dhl~~l~~f~~w~~~~~~--~~~~~~c~~~~l~~~~l~~~~~~r~ql~~~l~~~~~~~~------~~~~~~~~s~~~~~i 916 (1009)
|||++++||+.|++.... ....+||++||||..+|+++.++|.||.+.|.+.|++.. ....+|.++.+++++
T Consensus 682 D~la~~~ay~~w~~~~~~~~~~~~~fc~~~fLs~~~l~~i~~l~~q~~~~l~~~g~~~~~~~~~~~~~~~n~~s~~~~~i 761 (924)
T KOG0920|consen 682 DHLAVVRAYAGWREILRSGPSAEKDFCEENFLSSNTLQEISSLRVQFLELLSDIGLIPISSTAALTDSECNHNSQNPELV 761 (924)
T ss_pred hHHHHHHHHHHHHHHHhccchHHHHHHHHhhccHHHHHHHHHHHHHHHHHhhhcccccCCcccccCchhhhhcCCCHHHH
Confidence 999999999999998876 567899999999999999999999999999999999875 345678899999999
Q ss_pred HHHHHhccCCCcccccc---ccccceeEeecCCEEEEecCCCCCCCCCCCCCeEEEeeehhccc-ceeeeccccCHHHHH
Q 001817 917 RAVICAGLFPGLCSVVN---KEKSIALKTMEDGQVLLYSNSVNAGVPKIPYPWLVFNEKIKVNS-VFLRDSTGVSDSVLL 992 (1009)
Q Consensus 917 ~~~l~ag~~pnva~~~~---~~~~~~~~~~~~~~v~ihpsSv~~~~~~~~~~~vvy~e~~~t~~-~~ir~~t~v~~~~l~ 992 (1009)
+++||||||||++.+.. ..+...|.+..++.|.+||+|||.+...+..+|++|+|+++|++ .|+|++|.|++..++
T Consensus 762 ravl~a~lyP~i~~~~~~~~~~~~~~~~~~~~~~v~i~~~sv~~~~~~~~~p~l~~~~k~~t~~~~~~rd~T~v~~~~~l 841 (924)
T KOG0920|consen 762 RAVLCAGLYPNIAFVRRMEPKSKSVTFVTKADGRVIIHPSSVNEQSTGFQSPFLVFPEKVKSTRLVSLRDTTSVSSSALL 841 (924)
T ss_pred HHHHhccCCCceeeeecccCCcCcceeecCCceeEEEecchhhccccccCCcceEEeeecccCCcceeeecCCCCcHHhe
Confidence 99999999999999875 44556677777889999999999988888888999999999999 999999999999999
Q ss_pred HhcCccc-cCCCCCCC
Q 001817 993 LFGGNIS-RGGLVSCL 1007 (1009)
Q Consensus 993 lfgg~~~-~~~~~~~~ 1007 (1009)
||||... ..+..|++
T Consensus 842 lfgg~~~~~~~~~~~~ 857 (924)
T KOG0920|consen 842 LFGGGISTVRMKSGSL 857 (924)
T ss_pred eecCCceeecCCCCcc
Confidence 9999887 66665553
No 2
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=100.00 E-value=9e-129 Score=1102.51 Aligned_cols=630 Identities=39% Similarity=0.651 Sum_probs=576.8
Q ss_pred hhhHHHHHhhcCCCCHHHHHHHHHHHHcCCeEEEEecCCCchhhhHHHHHHHHHHHHhcCCceEEEechhHHHHHHHHHH
Q 001817 285 PEGQKMLEFRRSLPSYKERDALLKAISENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSE 364 (1009)
Q Consensus 285 ~~~~~l~~~r~~LPi~~~q~~il~~l~~~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~IvvtqPrR~La~qva~ 364 (1009)
.....+.+.|..||+++++++|+.++++|+++||.|+||||||||+|||+++..+. ..++|.||||||++|.++|+
T Consensus 38 ~~~~~i~~qR~~LPI~~~r~~il~~ve~nqvlIviGeTGsGKSTQipQyL~eaG~~----~~g~I~~TQPRRVAavslA~ 113 (674)
T KOG0922|consen 38 STNLSIQEQRESLPIYKYRDQILYAVEDNQVLIVIGETGSGKSTQIPQYLAEAGFA----SSGKIACTQPRRVAAVSLAK 113 (674)
T ss_pred ccccCHHHhhccCCHHHHHHHHHHHHHHCCEEEEEcCCCCCccccHhHHHHhcccc----cCCcEEeecCchHHHHHHHH
Confidence 34456888999999999999999999999999999999999999999999986553 44569999999999999999
Q ss_pred HHHHHhCCcccceeeeeeeeccccCCCcEEEEEccHHHHHHHhcCCCCCCccEEEEeCCCcCCCcchHHHHHHHHHcccC
Q 001817 365 RVAAERGEKLGESVGYKVRLEGMKGRDTRLMFCTTGILLRRLLVDRSLRGVTHVIVDEIHERGMNEDFLLIVLKELLPRR 444 (1009)
Q Consensus 365 rva~e~~~~~g~~vGy~vr~e~~~~~~t~Iiv~T~g~Ll~~L~~~~~l~~is~IIIDEaHeR~~~~d~ll~llk~ll~~~ 444 (1009)
||++|+|..+|..|||.+||++..+..|+|.|+|+|+|||.++.||.|++|++|||||||||++++|+++++||.++.++
T Consensus 114 RVAeE~~~~lG~~VGY~IRFed~ts~~TrikymTDG~LLRE~l~Dp~LskYsvIIlDEAHERsl~TDiLlGlLKki~~~R 193 (674)
T KOG0922|consen 114 RVAEEMGCQLGEEVGYTIRFEDSTSKDTRIKYMTDGMLLREILKDPLLSKYSVIILDEAHERSLHTDILLGLLKKILKKR 193 (674)
T ss_pred HHHHHhCCCcCceeeeEEEecccCCCceeEEEecchHHHHHHhcCCccccccEEEEechhhhhhHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcEEEeccCCCHHHHHhhhCCCCeeccCCcccceeeEehhhHHHHhhhccCcccccccchhhhHHHHHHHHHHHHhhh
Q 001817 445 PELRLILMSATLNAELFSSYFGGAPMLHIPGFTYPVRAYFLENILEMTRYRLNTYNQIDDYGQEKSWKMQKQALALRKRK 524 (1009)
Q Consensus 445 ~~lkvIlmSATl~~~~~~~yf~~~pvi~i~g~~~pv~~~yl~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 524 (1009)
+++|+|+||||+|++.|++||+++|++.|+||.|||+++|+... ..
T Consensus 194 ~~LklIimSATlda~kfS~yF~~a~i~~i~GR~fPVei~y~~~p-------------~~--------------------- 239 (674)
T KOG0922|consen 194 PDLKLIIMSATLDAEKFSEYFNNAPILTIPGRTFPVEILYLKEP-------------TA--------------------- 239 (674)
T ss_pred CCceEEEEeeeecHHHHHHHhcCCceEeecCCCCceeEEeccCC-------------ch---------------------
Confidence 99999999999999999999999999999999999999998631 11
Q ss_pred hhHHHHHHHHHHHhhhcchhhhhhhccccCCCCCcchhhHHHHHHHHHhhcCCCcEEEEcCCHhHHHHHHHHHHcCC-CC
Q 001817 525 SSIASAVEDALEAADFREYSVQTQQSLSCWNPDSIGFNLIEHVLCHIVKKERPGAVLVFMTGWDDINSLKDQLQAHP-LL 603 (1009)
Q Consensus 525 ~~~~~~v~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~~~~i~~l~~~L~~~~-~~ 603 (1009)
+.+.+++ ..+..|+..+++|.||||++|.++|+.+++.|.+.. ..
T Consensus 240 ----dYv~a~~------------------------------~tv~~Ih~~E~~GDILvFLtGqeEIe~~~~~l~e~~~~~ 285 (674)
T KOG0922|consen 240 ----DYVDAAL------------------------------ITVIQIHLTEPPGDILVFLTGQEEIEAACELLRERAKSL 285 (674)
T ss_pred ----hhHHHHH------------------------------HHHHHHHccCCCCCEEEEeCCHHHHHHHHHHHHHHhhhc
Confidence 1222222 235677778899999999999999999999998642 11
Q ss_pred CCCCCeEEEEecCCCCHHHHHhhcCCCCCCceEEEEecCccccccCCCCeeEEEeCCCCccccccCCCCCCcccccccCH
Q 001817 604 GDPSRVLLLACHGSMASSEQRLIFDKPEDGVRKIVLATNMAETSITINDVVFVIDCGKAKETSYDALNNTPCLLPSWISK 683 (1009)
Q Consensus 604 ~~~~~~~v~~lHs~l~~~er~~v~~~f~~G~~kVLVATniae~GIdIp~V~~VId~g~~k~~~yd~~~~~~~l~~~~iS~ 683 (1009)
+......+.++||.|+.++|.+||+..+.|.+|||+||||||+|||||+|.||||+|+.|++.||+.+++.+|...|||+
T Consensus 286 ~~~~~~~~lply~aL~~e~Q~rvF~p~p~g~RKvIlsTNIAETSlTI~GI~YVVDsG~vK~~~y~p~~g~~~L~v~~ISk 365 (674)
T KOG0922|consen 286 PEDCPELILPLYGALPSEEQSRVFDPAPPGKRKVILSTNIAETSLTIDGIRYVVDSGFVKQKKYNPRTGLDSLIVVPISK 365 (674)
T ss_pred cccCcceeeeecccCCHHHhhccccCCCCCcceEEEEcceeeeeEEecceEEEEcCCceEEEeeccccCccceeEEechH
Confidence 21112278999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhHHhhhcccCCCCCCcEEEecchhhhhhhccCCCccccccCchhhhhHhhhcCcCCHHHHHHhhcCCCChhhHHHHHHH
Q 001817 684 AAARQRRGRAGRVQPGECYHLYPRYVYDAFADYQLPELLRTPLQSLCLQIKSLQLGSISEFLSRALQPPEPLSVKNAIEY 763 (1009)
Q Consensus 684 as~~QR~GRAGR~~~G~c~~Lys~~~~~~l~~~~~PEi~r~~L~~~~L~lk~l~~~~~~~fl~~~l~pP~~~~v~~al~~ 763 (1009)
+++.||+|||||++||+|||||++..|+.|.+.++|||+|++|..++|++|+||++|+..| +|++||+++++..|++.
T Consensus 366 asA~QRaGRAGRt~pGkcyRLYte~~~~~~~~~~~PEI~R~~Ls~~vL~Lkalgi~d~l~F--~f~d~P~~~~l~~AL~~ 443 (674)
T KOG0922|consen 366 ASANQRAGRAGRTGPGKCYRLYTESAYDKMPLQTVPEIQRVNLSSAVLQLKALGINDPLRF--PFIDPPPPEALEEALEE 443 (674)
T ss_pred HHHhhhcccCCCCCCceEEEeeeHHHHhhcccCCCCceeeechHHHHHHHHhcCCCCcccC--CCCCCCChHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999 99999999999999999
Q ss_pred HHHhccccCCCCcCh-hhhhcccCCCChhHHHHHHHhhhhCCcchHHHHHHhhcCCCccccCcChHHH-HHHHHhhhccC
Q 001817 764 LQIIGALDENENLTV-LGRNLSMLPVEPKLGKMLILGAIFNCLDPVMTVVAGLSVRDPFLMPFDKKDL-AESAKAQFSAR 841 (1009)
Q Consensus 764 L~~lgald~~~~lT~-lG~~ls~lpl~p~~~k~ll~~~~~~c~~~~l~i~a~ls~~~~f~~p~~~~~~-~~~~~~~f~~~ 841 (1009)
|..+||||++|.+|. +|+.|+.+|++|.++|||+.+..+||.+++++|||+||+.++|..|.+++.. ++..|.+|. +
T Consensus 444 L~~lgald~~g~lt~p~G~~ma~~Pl~p~lsk~ll~s~~~gc~~e~l~i~a~Lsv~~~f~~p~~~~~~~a~~~~~kf~-~ 522 (674)
T KOG0922|consen 444 LYSLGALDDRGKLTSPLGRQMAELPLEPHLSKMLLKSSELGCSEEILTIAAMLSVQSVFSRPKDKKAEDADRKRAKFA-N 522 (674)
T ss_pred HHhcCcccCcCCcCchHHhhhhhcCCCcchhhhhhhccccCCcchhhhheeeeeccceecCccchhhhhhhHHHHhhc-C
Confidence 999999999999999 9999999999999999999999999999999999999999999999988776 888999998 7
Q ss_pred ChhhHHHHHHHHHHHHHHhhcccchhhHHHhcCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCcCCCCCCCCHHHHHHHHH
Q 001817 842 DYSDHLALVRAYDGWKDAERHQSGYEYCWKNFLSAQTLKAIDSLRKQFLFLLKDAGLVDRNTENCNKWSHDEHLIRAVIC 921 (1009)
Q Consensus 842 ~~sDhl~~l~~f~~w~~~~~~~~~~~~c~~~~l~~~~l~~~~~~r~ql~~~l~~~~~~~~~~~~~~~~s~~~~~i~~~l~ 921 (1009)
..|||++++++|+.|... +...+||++||||.+.|+.+.++|+||..++.+.++.. .+ ...|.+.|++|||
T Consensus 523 ~eGDh~tlL~vy~~~~~~---~~~~~wC~en~i~~r~l~~a~~ir~QL~~i~~~~~~~~---~s---~~~d~~~i~k~l~ 593 (674)
T KOG0922|consen 523 PEGDHLTLLNVYESWKEN---GTSKKWCKENFINARSLKRAKDIRKQLRRILDKFGLPV---SS---CGGDMEKIRKCLC 593 (674)
T ss_pred cccCHHHHHHHHHHHHhc---CChhhHHHHhcccHHHHHHHHHHHHHHHHHHHHcCCCc---cC---CCCCHHHHHHHHH
Confidence 889999999999999873 45689999999999999999999999999998888753 12 2346788999999
Q ss_pred hccCCCccccccccccceeEeecCCE-EEEecCCCCCCCCCCCCCeEEEeeehhcccceeeeccccCHHHHHHhcCcccc
Q 001817 922 AGLFPGLCSVVNKEKSIALKTMEDGQ-VLLYSNSVNAGVPKIPYPWLVFNEKIKVNSVFLRDSTGVSDSVLLLFGGNISR 1000 (1009)
Q Consensus 922 ag~~pnva~~~~~~~~~~~~~~~~~~-v~ihpsSv~~~~~~~~~~~vvy~e~~~t~~~~ir~~t~v~~~~l~lfgg~~~~ 1000 (1009)
+|||.|+|.....+ + |+|+.+++ |.||||||++..+ ++||||||++.|+|.|||+||.|++.||..++.+.+.
T Consensus 594 aGff~N~A~~~~~~--~-Yrti~~~~~v~IHPSS~l~~~~---p~~viy~el~~Ttk~Y~r~Vt~i~~~wL~e~ap~~~~ 667 (674)
T KOG0922|consen 594 AGFFRNVAERDYQD--G-YRTIRGGQPVYIHPSSVLFRRK---PEWVIYHELLQTTKEYMRNVTAIDPEWLLELAPHFFK 667 (674)
T ss_pred HHHHHHHHHhhcCC--C-eEEccCCcEEEEechHHhhcCC---CCEEEEEEEeecchHhHhheeecCHHHHHHhCchHhh
Confidence 99999999876332 3 99987665 8899999999764 7999999999999999999999999999999998865
Q ss_pred CCCC
Q 001817 1001 GGLV 1004 (1009)
Q Consensus 1001 ~~~~ 1004 (1009)
....
T Consensus 668 ~~~~ 671 (674)
T KOG0922|consen 668 QSDE 671 (674)
T ss_pred cccc
Confidence 5443
No 3
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=8e-125 Score=1051.75 Aligned_cols=625 Identities=36% Similarity=0.585 Sum_probs=573.4
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHHHcCCeEEEEecCCCchhhhHHHHHHHHHHHHhcCCceEEEechhHHHHHHHHHHHHH
Q 001817 288 QKMLEFRRSLPSYKERDALLKAISENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVA 367 (1009)
Q Consensus 288 ~~l~~~r~~LPi~~~q~~il~~l~~~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~IvvtqPrR~La~qva~rva 367 (1009)
+.+.+.|+.||++..+++++..|..|+++||+|+||||||||++||+++.. .+..+.|.||||||++|+++|+||+
T Consensus 346 k~i~eqrq~LPvf~~R~~ll~~ir~n~vvvivgETGSGKTTQl~QyL~edG----Y~~~GmIGcTQPRRvAAiSVAkrVa 421 (1042)
T KOG0924|consen 346 KSIREQRQYLPVFACRDQLLSVIRENQVVVIVGETGSGKTTQLAQYLYEDG----YADNGMIGCTQPRRVAAISVAKRVA 421 (1042)
T ss_pred chHHHHHhhcchHHHHHHHHHHHhhCcEEEEEecCCCCchhhhHHHHHhcc----cccCCeeeecCchHHHHHHHHHHHH
Confidence 347788999999999999999999999999999999999999999999854 4567799999999999999999999
Q ss_pred HHhCCcccceeeeeeeeccccCCCcEEEEEccHHHHHHHhcCCCCCCccEEEEeCCCcCCCcchHHHHHHHHHcccCCCC
Q 001817 368 AERGEKLGESVGYKVRLEGMKGRDTRLMFCTTGILLRRLLVDRSLRGVTHVIVDEIHERGMNEDFLLIVLKELLPRRPEL 447 (1009)
Q Consensus 368 ~e~~~~~g~~vGy~vr~e~~~~~~t~Iiv~T~g~Ll~~L~~~~~l~~is~IIIDEaHeR~~~~d~ll~llk~ll~~~~~l 447 (1009)
.|+|..+|..|||.+||++.++++|.|.|+|.|+||+..+.+..|..|++||+||||||++++|+++++++.++.++.++
T Consensus 422 ~EM~~~lG~~VGYsIRFEdvT~~~T~IkymTDGiLLrEsL~d~~L~kYSviImDEAHERslNtDilfGllk~~larRrdl 501 (1042)
T KOG0924|consen 422 EEMGVTLGDTVGYSIRFEDVTSEDTKIKYMTDGILLRESLKDRDLDKYSVIIMDEAHERSLNTDILFGLLKKVLARRRDL 501 (1042)
T ss_pred HHhCCccccccceEEEeeecCCCceeEEEeccchHHHHHhhhhhhhheeEEEechhhhcccchHHHHHHHHHHHHhhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEeccCCCHHHHHhhhCCCCeeccCCcccceeeEehhhHHHHhhhccCcccccccchhhhHHHHHHHHHHHHhhhhhH
Q 001817 448 RLILMSATLNAELFSSYFGGAPMLHIPGFTYPVRAYFLENILEMTRYRLNTYNQIDDYGQEKSWKMQKQALALRKRKSSI 527 (1009)
Q Consensus 448 kvIlmSATl~~~~~~~yf~~~pvi~i~g~~~pv~~~yl~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 527 (1009)
|+|++|||+|++.|++|||+||.+.||||+|||++.|.... .
T Consensus 502 KliVtSATm~a~kf~nfFgn~p~f~IpGRTyPV~~~~~k~p--------------------------------------~ 543 (1042)
T KOG0924|consen 502 KLIVTSATMDAQKFSNFFGNCPQFTIPGRTYPVEIMYTKTP--------------------------------------V 543 (1042)
T ss_pred eEEEeeccccHHHHHHHhCCCceeeecCCccceEEEeccCc--------------------------------------h
Confidence 99999999999999999999999999999999999997532 1
Q ss_pred HHHHHHHHHHhhhcchhhhhhhccccCCCCCcchhhHHHHHHHHHhhcCCCcEEEEcCCHhHHHHHHHHHHcCCC---CC
Q 001817 528 ASAVEDALEAADFREYSVQTQQSLSCWNPDSIGFNLIEHVLCHIVKKERPGAVLVFMTGWDDINSLKDQLQAHPL---LG 604 (1009)
Q Consensus 528 ~~~v~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~~~~i~~l~~~L~~~~~---~~ 604 (1009)
.+.++.++.. ...|+.....|.||||++|.++++..+..+..... ..
T Consensus 544 eDYVeaavkq------------------------------~v~Ihl~~~~GdilIfmtGqediE~t~~~i~~~l~ql~~~ 593 (1042)
T KOG0924|consen 544 EDYVEAAVKQ------------------------------AVQIHLSGPPGDILIFMTGQEDIECTCDIIKEKLEQLDSA 593 (1042)
T ss_pred HHHHHHHHhh------------------------------heEeeccCCCCCEEEecCCCcchhHHHHHHHHHHHhhhcC
Confidence 1223333221 22344456789999999999999988877764311 11
Q ss_pred CCCCeEEEEecCCCCHHHHHhhcCCCCCCceEEEEecCccccccCCCCeeEEEeCCCCccccccCCCCCCcccccccCHH
Q 001817 605 DPSRVLLLACHGSMASSEQRLIFDKPEDGVRKIVLATNMAETSITINDVVFVIDCGKAKETSYDALNNTPCLLPSWISKA 684 (1009)
Q Consensus 605 ~~~~~~v~~lHs~l~~~er~~v~~~f~~G~~kVLVATniae~GIdIp~V~~VId~g~~k~~~yd~~~~~~~l~~~~iS~a 684 (1009)
...++.|+++++.||.+-|.++|+..+.|.+|+||||||||+++|||+|.||||+|+.|.+.|++..|+..|...+||+|
T Consensus 594 ~~~~L~vlpiYSQLp~dlQ~kiFq~a~~~vRK~IvATNIAETSLTi~gI~yVID~Gy~K~kvyn~~~G~D~L~~~pIS~A 673 (1042)
T KOG0924|consen 594 PTTDLAVLPIYSQLPADLQAKIFQKAEGGVRKCIVATNIAETSLTIPGIRYVIDTGYCKLKVYNPRIGMDALQIVPISQA 673 (1042)
T ss_pred CCCceEEEeehhhCchhhhhhhcccCCCCceeEEEeccchhhceeecceEEEEecCceeeeecccccccceeEEEechhc
Confidence 22378899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHhhhcccCCCCCCcEEEecchhhhh-hhccCCCccccccCchhhhhHhhhcCcCCHHHHHHhhcCCCChhhHHHHHHH
Q 001817 685 AARQRRGRAGRVQPGECYHLYPRYVYD-AFADYQLPELLRTPLQSLCLQIKSLQLGSISEFLSRALQPPEPLSVKNAIEY 763 (1009)
Q Consensus 685 s~~QR~GRAGR~~~G~c~~Lys~~~~~-~l~~~~~PEi~r~~L~~~~L~lk~l~~~~~~~fl~~~l~pP~~~~v~~al~~ 763 (1009)
++.||+|||||++||.||||||+..|. .|.+.++|||+|++|.+++|.+++++++++.+| +|+|||+.+.+..|+-.
T Consensus 674 nA~QRaGRAGRt~pG~cYRlYTe~ay~~eml~stvPEIqRTNl~nvVLlLkslgV~dll~F--dFmD~Pped~~~~sly~ 751 (1042)
T KOG0924|consen 674 NADQRAGRAGRTGPGTCYRLYTEDAYKNEMLPSTVPEIQRTNLSNVVLLLKSLGVDDLLKF--DFMDPPPEDNLLNSLYQ 751 (1042)
T ss_pred cchhhccccCCCCCcceeeehhhhHHHhhcccCCCchhhhcchhhHHHHHHhcChhhhhCC--CcCCCCHHHHHHHHHHH
Confidence 999999999999999999999998886 599999999999999999999999999999999 99999999999999999
Q ss_pred HHHhccccCCCCcChhhhhcccCCCChhHHHHHHHhhhhCCcchHHHHHHhhcCCCccccCcChHHHHHHHHhhhccCCh
Q 001817 764 LQIIGALDENENLTVLGRNLSMLPVEPKLGKMLILGAIFNCLDPVMTVVAGLSVRDPFLMPFDKKDLAESAKAQFSARDY 843 (1009)
Q Consensus 764 L~~lgald~~~~lT~lG~~ls~lpl~p~~~k~ll~~~~~~c~~~~l~i~a~ls~~~~f~~p~~~~~~~~~~~~~f~~~~~ 843 (1009)
|..+||||..|.||++|+.|+.||+||.++||||.++.+||.+++|+|++|||+...|+.|.++.+.++.+|.+|. ...
T Consensus 752 Lw~LGAl~~~g~LT~lG~~MvefpLDP~lsKmll~a~~~Gc~dEilsIvSmLSvp~VF~rpker~eead~ar~Kf~-~~~ 830 (1042)
T KOG0924|consen 752 LWTLGALDNTGQLTPLGRKMVEFPLDPPLSKMLLMAARMGCSDEILSIVSMLSVPAVFYRPKEREEEADAAREKFQ-VPE 830 (1042)
T ss_pred HHHhhccccCCccchhhHHhhhCCCCchHHHHHHHHhccCcHHHHHHHHHHhcccceeeccccchhhhhhHHhhhc-CCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999998 788
Q ss_pred hhHHHHHHHHHHHHHHhhcccchhhHHHhcCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCcCCCCCCCCHHHHHHHHHhc
Q 001817 844 SDHLALVRAYDGWKDAERHQSGYEYCWKNFLSAQTLKAIDSLRKQFLFLLKDAGLVDRNTENCNKWSHDEHLIRAVICAG 923 (1009)
Q Consensus 844 sDhl~~l~~f~~w~~~~~~~~~~~~c~~~~l~~~~l~~~~~~r~ql~~~l~~~~~~~~~~~~~~~~s~~~~~i~~~l~ag 923 (1009)
||||++||+|++|++.+ ....||.+|+|+.++|+.+.++|.||+++|++.++.- +. +.+|++|++|||+|
T Consensus 831 sDhLTlLNVf~qw~~~~---~~~~WCnd~~l~~kaL~~arevR~ql~~il~~l~~~l------~S-~~dwdivrKCIcs~ 900 (1042)
T KOG0924|consen 831 SDHLTLLNVFNQWRKNK---YSSMWCNDHYLQVKALKKAREVRRQLLEILKQLKLPL------IS-SDDWDIVRKCICSA 900 (1042)
T ss_pred CchhhHHHHHHHHHhcC---CchhhhhhhhhhHHHHHHHHHHHHHHHHHHHHcCCCc------cc-CchHHHHHHHHHHH
Confidence 99999999999998764 4578999999999999999999999999999999852 22 26899999999999
Q ss_pred cCCCccccccccccceeEeecCCE-EEEecCCCCCCCCCCCCCeEEEeeehhcccceeeeccccCHHHHHHhcCccccCC
Q 001817 924 LFPGLCSVVNKEKSIALKTMEDGQ-VLLYSNSVNAGVPKIPYPWLVFNEKIKVNSVFLRDSTGVSDSVLLLFGGNISRGG 1002 (1009)
Q Consensus 924 ~~pnva~~~~~~~~~~~~~~~~~~-v~ihpsSv~~~~~~~~~~~vvy~e~~~t~~~~ir~~t~v~~~~l~lfgg~~~~~~ 1002 (1009)
+|-|+|++. +.+.|.++..+. +++||+|++++. +.|+||||||++.|++.||++||.|+|.||+..||-+..-.
T Consensus 901 ~fhn~Arlk---g~g~YV~~~tg~~c~lHPsS~L~g~--y~p~Yivyhel~~T~keym~cvT~v~~~wl~E~gp~~y~ik 975 (1042)
T KOG0924|consen 901 YFHNAARLK---GIGEYVNLSTGIPCHLHPSSVLHGL--YTPDYIVYHELLMTTKEYMQCVTSVSPEWLAELGPMFYSIK 975 (1042)
T ss_pred HHHHHHHhc---cCceEEEccCCcceeecchHhhhcC--CCCCeeeehHHHHhHHHHHHHHhhCCHHHHHHhCceeEecc
Confidence 999999874 334688877665 899999999876 46799999999999999999999999999999999776543
No 4
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.3e-122 Score=1034.69 Aligned_cols=625 Identities=36% Similarity=0.607 Sum_probs=568.7
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHHHcCCeEEEEecCCCchhhhHHHHHHHHHHHHhcCCceEEEechhHHHHHHHHHHHHH
Q 001817 288 QKMLEFRRSLPSYKERDALLKAISENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVA 367 (1009)
Q Consensus 288 ~~l~~~r~~LPi~~~q~~il~~l~~~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~IvvtqPrR~La~qva~rva 367 (1009)
..+.+.|+.||+|.++++++.++.+++++||.|+||||||||+|||+.+..+.. .+.+|.||||||++|+++|.||+
T Consensus 255 ~~iee~RksLPVy~ykdell~av~e~QVLiI~GeTGSGKTTQiPQyL~EaGytk---~gk~IgcTQPRRVAAmSVAaRVA 331 (902)
T KOG0923|consen 255 ESIEEVRKSLPVYPYKDELLKAVKEHQVLIIVGETGSGKTTQIPQYLYEAGYTK---GGKKIGCTQPRRVAAMSVAARVA 331 (902)
T ss_pred HHHHHHHhcCCchhhHHHHHHHHHhCcEEEEEcCCCCCccccccHHHHhccccc---CCceEeecCcchHHHHHHHHHHH
Confidence 357788999999999999999999999999999999999999999999976542 23459999999999999999999
Q ss_pred HHhCCcccceeeeeeeeccccCCCcEEEEEccHHHHHHHhcCCCCCCccEEEEeCCCcCCCcchHHHHHHHHHcccCCCC
Q 001817 368 AERGEKLGESVGYKVRLEGMKGRDTRLMFCTTGILLRRLLVDRSLRGVTHVIVDEIHERGMNEDFLLIVLKELLPRRPEL 447 (1009)
Q Consensus 368 ~e~~~~~g~~vGy~vr~e~~~~~~t~Iiv~T~g~Ll~~L~~~~~l~~is~IIIDEaHeR~~~~d~ll~llk~ll~~~~~l 447 (1009)
+|+|.++|..|||.+||++++++.|.|.|+|+|+|++.++.+|.|..|++|||||||||++++|+|.++++++.+.+|++
T Consensus 332 ~EMgvkLG~eVGYsIRFEdcTSekTvlKYMTDGmLlREfL~epdLasYSViiiDEAHERTL~TDILfgLvKDIar~RpdL 411 (902)
T KOG0923|consen 332 EEMGVKLGHEVGYSIRFEDCTSEKTVLKYMTDGMLLREFLSEPDLASYSVIIVDEAHERTLHTDILFGLVKDIARFRPDL 411 (902)
T ss_pred HHhCcccccccceEEEeccccCcceeeeeecchhHHHHHhccccccceeEEEeehhhhhhhhhhHHHHHHHHHHhhCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEeccCCCHHHHHhhhCCCCeeccCCcccceeeEehhhHHHHhhhccCcccccccchhhhHHHHHHHHHHHHhhhhhH
Q 001817 448 RLILMSATLNAELFSSYFGGAPMLHIPGFTYPVRAYFLENILEMTRYRLNTYNQIDDYGQEKSWKMQKQALALRKRKSSI 527 (1009)
Q Consensus 448 kvIlmSATl~~~~~~~yf~~~pvi~i~g~~~pv~~~yl~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 527 (1009)
|++++|||+|++.|+.||+++|++.+|||.|||+++|.... -
T Consensus 412 KllIsSAT~DAekFS~fFDdapIF~iPGRRyPVdi~Yt~~P--------------------------------------E 453 (902)
T KOG0923|consen 412 KLLISSATMDAEKFSAFFDDAPIFRIPGRRYPVDIFYTKAP--------------------------------------E 453 (902)
T ss_pred eEEeeccccCHHHHHHhccCCcEEeccCcccceeeecccCC--------------------------------------c
Confidence 99999999999999999999999999999999999996531 0
Q ss_pred HHHHHHHHHHhhhcchhhhhhhccccCCCCCcchhhHHHHHHHHHhhcCCCcEEEEcCCHhHHHHHHHHHHcCC-CCCC-
Q 001817 528 ASAVEDALEAADFREYSVQTQQSLSCWNPDSIGFNLIEHVLCHIVKKERPGAVLVFMTGWDDINSLKDQLQAHP-LLGD- 605 (1009)
Q Consensus 528 ~~~v~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~~~~i~~l~~~L~~~~-~~~~- 605 (1009)
.+.++.++. .+..|+...+.|.||||+++.++|+.+.+.|.... .+|.
T Consensus 454 AdYldAai~------------------------------tVlqIH~tqp~GDILVFltGQeEIEt~~e~l~~~~~~LGsk 503 (902)
T KOG0923|consen 454 ADYLDAAIV------------------------------TVLQIHLTQPLGDILVFLTGQEEIETVKENLKERCRRLGSK 503 (902)
T ss_pred hhHHHHHHh------------------------------hheeeEeccCCccEEEEeccHHHHHHHHHHHHHHHHHhccc
Confidence 112222221 24455666778999999999999999988886532 1232
Q ss_pred CCCeEEEEecCCCCHHHHHhhcCCCCCCceEEEEecCccccccCCCCeeEEEeCCCCccccccCCCCCCcccccccCHHh
Q 001817 606 PSRVLLLACHGSMASSEQRLIFDKPEDGVRKIVLATNMAETSITINDVVFVIDCGKAKETSYDALNNTPCLLPSWISKAA 685 (1009)
Q Consensus 606 ~~~~~v~~lHs~l~~~er~~v~~~f~~G~~kVLVATniae~GIdIp~V~~VId~g~~k~~~yd~~~~~~~l~~~~iS~as 685 (1009)
...+.+.|+|++||.+.|.+||++.++|.+|||+||||||+||||++|.||||.|+.|+++|++.+|+.+|...+||+++
T Consensus 504 i~eliv~PiYaNLPselQakIFePtP~gaRKVVLATNIAETSlTIdgI~yViDpGf~K~nsynprtGmesL~v~piSKAs 583 (902)
T KOG0923|consen 504 IRELIVLPIYANLPSELQAKIFEPTPPGARKVVLATNIAETSLTIDGIKYVIDPGFVKQNSYNPRTGMESLLVTPISKAS 583 (902)
T ss_pred cceEEEeeccccCChHHHHhhcCCCCCCceeEEEeecchhhceeecCeEEEecCccccccCcCCCcCceeEEEeeechhh
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhcccCCCCCCcEEEecchhhhhh-hccCCCccccccCchhhhhHhhhcCcCCHHHHHHhhcCCCChhhHHHHHHHH
Q 001817 686 ARQRRGRAGRVQPGECYHLYPRYVYDA-FADYQLPELLRTPLQSLCLQIKSLQLGSISEFLSRALQPPEPLSVKNAIEYL 764 (1009)
Q Consensus 686 ~~QR~GRAGR~~~G~c~~Lys~~~~~~-l~~~~~PEi~r~~L~~~~L~lk~l~~~~~~~fl~~~l~pP~~~~v~~al~~L 764 (1009)
+.||+|||||++||+|||||+...|.. +...++|||+|++|.+++|.+|+||+.|+..| +|+|||+.+++..||+.|
T Consensus 584 A~QRaGRAGRtgPGKCfRLYt~~aY~~eLE~~t~PEIqRtnL~nvVL~LkSLGI~Dl~~F--dFmDpPp~etL~~aLE~L 661 (902)
T KOG0923|consen 584 ANQRAGRAGRTGPGKCFRLYTAWAYEHELEEMTVPEIQRTNLGNVVLLLKSLGIHDLIHF--DFLDPPPTETLLKALEQL 661 (902)
T ss_pred hhhhccccCCCCCCceEEeechhhhhhhhccCCCcceeeccchhHHHHHHhcCcchhccc--ccCCCCChHHHHHHHHHH
Confidence 999999999999999999999999975 78888899999999999999999999999999 999999999999999999
Q ss_pred HHhccccCCCCcChhhhhcccCCCChhHHHHHHHhhhhCCcchHHHHHHhhcCC-CccccCcChHHHHHHHHhhhccCCh
Q 001817 765 QIIGALDENENLTVLGRNLSMLPVEPKLGKMLILGAIFNCLDPVMTVVAGLSVR-DPFLMPFDKKDLAESAKAQFSARDY 843 (1009)
Q Consensus 765 ~~lgald~~~~lT~lG~~ls~lpl~p~~~k~ll~~~~~~c~~~~l~i~a~ls~~-~~f~~p~~~~~~~~~~~~~f~~~~~ 843 (1009)
+.+|||+..|+||.+|+.|++||+||.++|||+.+..++|.+++++||||||+. ++|+.|.++.-.++++++.|. ...
T Consensus 662 yaLGALn~~GeLTk~GrrMaEfP~dPmlsKmi~as~ky~cs~EiitiaamlS~~~svfyrpk~~~v~ad~a~~~f~-~~~ 740 (902)
T KOG0923|consen 662 YALGALNHLGELTKLGRRMAEFPVDPMLSKMIVASEKYKCSEEIITIAAMLSVGASVFYRPKDKQVHADNARKNFE-EPV 740 (902)
T ss_pred HHhhccccccchhhhhhhhhhcCCCHHHHhHHhhhccccchHHHHHHHHHHhcCchheecchhhhhhhhhhhhccC-CCC
Confidence 999999999999999999999999999999999999999999999999999985 689999998888999999998 568
Q ss_pred hhHHHHHHHHHHHHHHhhcccchhhHHHhcCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCcCCCCCCCCHHHHHHHHHhc
Q 001817 844 SDHLALVRAYDGWKDAERHQSGYEYCWKNFLSAQTLKAIDSLRKQFLFLLKDAGLVDRNTENCNKWSHDEHLIRAVICAG 923 (1009)
Q Consensus 844 sDhl~~l~~f~~w~~~~~~~~~~~~c~~~~l~~~~l~~~~~~r~ql~~~l~~~~~~~~~~~~~~~~s~~~~~i~~~l~ag 923 (1009)
|||++++++|+.|...+ .+.+||++||+++.+|..+.++|.||..+|...++...+ +..+...||.++.+|
T Consensus 741 gDhi~~L~vyn~w~es~---~s~~wC~e~~iq~~sm~rardir~qL~gll~~v~~~~~s------~~~~~~~irk~i~aG 811 (902)
T KOG0923|consen 741 GDHIVLLNVYNQWKESK---YSTQWCYENFIQYRSMKRARDIRDQLEGLLERVEIDLSS------NQNDLDKIRKAITAG 811 (902)
T ss_pred cchhhhhHHHHHHhhcc---hhhHHHHHhhhhHHHHHHHHHHHHHHHHHhhhccccccC------ChHHHHHHHHHHhcc
Confidence 99999999999998764 467999999999999999999999999999987763211 112456799999999
Q ss_pred cCCCccccccccccceeEeecCCE-EEEecCCCCCCCCCCCCCeEEEeeehhcccceeeeccccCHHHHHHhcCccccC
Q 001817 924 LFPGLCSVVNKEKSIALKTMEDGQ-VLLYSNSVNAGVPKIPYPWLVFNEKIKVNSVFLRDSTGVSDSVLLLFGGNISRG 1001 (1009)
Q Consensus 924 ~~pnva~~~~~~~~~~~~~~~~~~-v~ihpsSv~~~~~~~~~~~vvy~e~~~t~~~~ir~~t~v~~~~l~lfgg~~~~~ 1001 (1009)
||+|+|++. +.++|+|+...+ |++||.|+++.. .|.||||||++.|++.|||.++.+.+.||+..+.++...
T Consensus 812 ff~h~a~l~---~~g~y~tvk~~~tv~~hp~S~l~~~---~P~wvvy~eLv~tske~mr~~~e~e~~Wlie~aphyyk~ 884 (902)
T KOG0923|consen 812 FFYHTAKLS---KGGHYRTVKHPQTVSIHPNSGLFEQ---LPRWVVYHELVLTSKEFMRQVIEIEEEWLIEVAPHYYKL 884 (902)
T ss_pred ccccceecc---CCCcceeeccCcceeecCccccccc---CCceEEEeehhcChHHHHHHHHhhhhhHHHHhchhhhhh
Confidence 999999885 345798887665 899999999863 348999999999999999999999999999999999873
No 5
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.4e-118 Score=971.24 Aligned_cols=625 Identities=36% Similarity=0.598 Sum_probs=569.3
Q ss_pred cChhhHHHHHhhcCCCCHHHHHHHHHHHHcCCeEEEEecCCCchhhhHHHHHHHHHHHHhcCCceEEEechhHHHHHHHH
Q 001817 283 ESPEGQKMLEFRRSLPSYKERDALLKAISENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAV 362 (1009)
Q Consensus 283 ~~~~~~~l~~~r~~LPi~~~q~~il~~l~~~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~IvvtqPrR~La~qv 362 (1009)
.++.|.++++.|..||+|.|++++++.+.+||.++++|+||||||||+||++++...... ..|.||||+|.+|+++
T Consensus 32 ~s~rY~~ilk~R~~LPvw~~k~~F~~~l~~nQ~~v~vGetgsGKttQiPq~~~~~~~~~~----~~v~CTQprrvaamsv 107 (699)
T KOG0925|consen 32 YSQRYYDILKKRRELPVWEQKEEFLKLLLNNQIIVLVGETGSGKTTQIPQFVLEYELSHL----TGVACTQPRRVAAMSV 107 (699)
T ss_pred CcHHHHHHHHHHhcCchHHhHHHHHHHHhcCceEEEEecCCCCccccCcHHHHHHHHhhc----cceeecCchHHHHHHH
Confidence 367788999999999999999999999999999999999999999999999999887643 5799999999999999
Q ss_pred HHHHHHHhCCcccceeeeeeeeccccCCCcEEEEEccHHHHHHHhcCCCCCCccEEEEeCCCcCCCcchHHHHHHHHHcc
Q 001817 363 SERVAAERGEKLGESVGYKVRLEGMKGRDTRLMFCTTGILLRRLLVDRSLRGVTHVIVDEIHERGMNEDFLLIVLKELLP 442 (1009)
Q Consensus 363 a~rva~e~~~~~g~~vGy~vr~e~~~~~~t~Iiv~T~g~Ll~~L~~~~~l~~is~IIIDEaHeR~~~~d~ll~llk~ll~ 442 (1009)
|.||+.|++..+|..|||.++++++.+++|-+.|||+|+|++..++++.+..+++||+||||||++.+|++++++++++.
T Consensus 108 a~RVadEMDv~lG~EVGysIrfEdC~~~~T~Lky~tDgmLlrEams~p~l~~y~viiLDeahERtlATDiLmGllk~v~~ 187 (699)
T KOG0925|consen 108 AQRVADEMDVTLGEEVGYSIRFEDCTSPNTLLKYCTDGMLLREAMSDPLLGRYGVIILDEAHERTLATDILMGLLKEVVR 187 (699)
T ss_pred HHHHHHHhccccchhccccccccccCChhHHHHHhcchHHHHHHhhCcccccccEEEechhhhhhHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCcEEEeccCCCHHHHHhhhCCCCeeccCCcccceeeEehhhHHHHhhhccCcccccccchhhhHHHHHHHHHHHHh
Q 001817 443 RRPELRLILMSATLNAELFSSYFGGAPMLHIPGFTYPVRAYFLENILEMTRYRLNTYNQIDDYGQEKSWKMQKQALALRK 522 (1009)
Q Consensus 443 ~~~~lkvIlmSATl~~~~~~~yf~~~pvi~i~g~~~pv~~~yl~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 522 (1009)
.+|++|+|+||||+++++|..||+++|++.+|| +|||+++|.++..
T Consensus 188 ~rpdLk~vvmSatl~a~Kfq~yf~n~Pll~vpg-~~PvEi~Yt~e~e--------------------------------- 233 (699)
T KOG0925|consen 188 NRPDLKLVVMSATLDAEKFQRYFGNAPLLAVPG-THPVEIFYTPEPE--------------------------------- 233 (699)
T ss_pred hCCCceEEEeecccchHHHHHHhCCCCeeecCC-CCceEEEecCCCC---------------------------------
Confidence 999999999999999999999999999999999 9999999976420
Q ss_pred hhhhHHHHHHHHHHHhhhcchhhhhhhccccCCCCCcchhhHHHHHHHHHhhcCCCcEEEEcCCHhHHHHHHHHHHcC--
Q 001817 523 RKSSIASAVEDALEAADFREYSVQTQQSLSCWNPDSIGFNLIEHVLCHIVKKERPGAVLVFMTGWDDINSLKDQLQAH-- 600 (1009)
Q Consensus 523 ~~~~~~~~v~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~~~~i~~l~~~L~~~-- 600 (1009)
.+.++.++ ..+..|+..+.+|.||||+++.++|+.+++.+...
T Consensus 234 -----rDylEaai------------------------------rtV~qih~~ee~GDilvFLtgeeeIe~aC~~i~re~~ 278 (699)
T KOG0925|consen 234 -----RDYLEAAI------------------------------RTVLQIHMCEEPGDILVFLTGEEEIEDACRKISREVD 278 (699)
T ss_pred -----hhHHHHHH------------------------------HHHHHHHhccCCCCEEEEecCHHHHHHHHHHHHHHHH
Confidence 01222222 34667777788999999999999999999998742
Q ss_pred CCCCCCCCeEEEEecCCCCHHHHHhhcCCCCCC-----ceEEEEecCccccccCCCCeeEEEeCCCCccccccCCCCCCc
Q 001817 601 PLLGDPSRVLLLACHGSMASSEQRLIFDKPEDG-----VRKIVLATNMAETSITINDVVFVIDCGKAKETSYDALNNTPC 675 (1009)
Q Consensus 601 ~~~~~~~~~~v~~lHs~l~~~er~~v~~~f~~G-----~~kVLVATniae~GIdIp~V~~VId~g~~k~~~yd~~~~~~~ 675 (1009)
....+.....|.++| +.+|+.+|+..+.. .+||+|+||+||++++|++|++|||.|+.|++.|+|.-...+
T Consensus 279 ~L~~~~g~l~v~PLy----P~~qq~iFep~p~~~~~~~~RkvVvstniaetsltidgiv~VIDpGf~kqkVYNPRIRves 354 (699)
T KOG0925|consen 279 NLGPQVGPLKVVPLY----PAQQQRIFEPAPEKRNGAYGRKVVVSTNIAETSLTIDGIVFVIDPGFSKQKVYNPRIRVES 354 (699)
T ss_pred hhccccCCceEEecC----chhhccccCCCCcccCCCccceEEEEecchheeeeeccEEEEecCchhhhcccCcceeeee
Confidence 122333467899999 67888999988743 489999999999999999999999999999999999999999
Q ss_pred ccccccCHHhHHhhhcccCCCCCCcEEEecchhhhhh-hccCCCccccccCchhhhhHhhhcCcCCHHHHHHhhcCCCCh
Q 001817 676 LLPSWISKAAARQRRGRAGRVQPGECYHLYPRYVYDA-FADYQLPELLRTPLQSLCLQIKSLQLGSISEFLSRALQPPEP 754 (1009)
Q Consensus 676 l~~~~iS~as~~QR~GRAGR~~~G~c~~Lys~~~~~~-l~~~~~PEi~r~~L~~~~L~lk~l~~~~~~~fl~~~l~pP~~ 754 (1009)
++..+||++++.||+|||||.+||+||+||+++.|+. |.+.+.|||+|++|.+++|++|.+|++++..| +|+|||.+
T Consensus 355 llv~PISkasA~qR~gragrt~pGkcfrLYte~~~~~em~~~typeilrsNL~s~VL~LKklgI~dlvhf--dfmDpPAP 432 (699)
T KOG0925|consen 355 LLVSPISKASAQQRAGRAGRTRPGKCFRLYTEEAFEKEMQPQTYPEILRSNLSSTVLQLKKLGIDDLVHF--DFMDPPAP 432 (699)
T ss_pred eeeccchHhHHHHHhhhccCCCCCceEEeecHHhhhhcCCCCCcHHHHHHhhHHHHHHHHhcCcccccCC--cCCCCCCh
Confidence 9999999999999999999999999999999999975 99999999999999999999999999999999 99999999
Q ss_pred hhHHHHHHHHHHhccccCCCCcChhhhhcccCCCChhHHHHHHHhhhhCCcchHHHHHHhhcCCCccccCc-ChHHHHHH
Q 001817 755 LSVKNAIEYLQIIGALDENENLTVLGRNLSMLPVEPKLGKMLILGAIFNCLDPVMTVVAGLSVRDPFLMPF-DKKDLAES 833 (1009)
Q Consensus 755 ~~v~~al~~L~~lgald~~~~lT~lG~~ls~lpl~p~~~k~ll~~~~~~c~~~~l~i~a~ls~~~~f~~p~-~~~~~~~~ 833 (1009)
+++.+|++.|..++|||++|+||++|..||.||+||+++||||.++.|+|.+++|+|+||||+++.|+.|. +.++.|+.
T Consensus 433 EtLMrALE~LnYLaaLdDdGnLT~lG~imSEFPLdPqLAkmLi~S~efnCsnEiLsisAMLsvPncFvRp~~~a~kaAde 512 (699)
T KOG0925|consen 433 ETLMRALEVLNYLAALDDDGNLTSLGEIMSEFPLDPQLAKMLIGSCEFNCSNEILSISAMLSVPNCFVRPTSSASKAADE 512 (699)
T ss_pred HHHHHHHHHhhhhhhhCCCcccchhhhhhhcCCCChHHHHHHhhcCCCCchHHHHHHHhcccCCccccCCChhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998 77889999
Q ss_pred HHhhhccCChhhHHHHHHHHHHHHHHhhcccchhhHHHhcCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCcCCCCCCCCH
Q 001817 834 AKAQFSARDYSDHLALVRAYDGWKDAERHQSGYEYCWKNFLSAQTLKAIDSLRKQFLFLLKDAGLVDRNTENCNKWSHDE 913 (1009)
Q Consensus 834 ~~~~f~~~~~sDhl~~l~~f~~w~~~~~~~~~~~~c~~~~l~~~~l~~~~~~r~ql~~~l~~~~~~~~~~~~~~~~s~~~ 913 (1009)
+++.|+ +..|||++++|+|++|++.. ...+||++||||+++|..++++|.||.++|.+.++.-.... ++. ..+.
T Consensus 513 ak~~fa-H~dGDHlTLlnVYhAfkq~~---~~~~WC~~~flN~ral~~Ad~vR~qL~rim~R~~L~~~st~-F~S-~~y~ 586 (699)
T KOG0925|consen 513 AKETFA-HIDGDHLTLLNVYHAFKQNN---EDPNWCYDNFLNYRALKSADNVRQQLLRIMDRFNLPLCSTD-FGS-RDYY 586 (699)
T ss_pred HHHHhc-cCCcchHHHHHHHHHHHhcC---CChhHHHHhcccHHHHHhHHHHHHHHHHHHHHhcCcccCCC-CCC-hhHH
Confidence 999998 78899999999999998754 35689999999999999999999999999999998643322 111 1223
Q ss_pred HHHHHHHHhccCCCccccccccccceeEeecCCE-EEEecCCCCCCCCCCCCCeEEEeeehhcccceeeeccccCHHHHH
Q 001817 914 HLIRAVICAGLFPGLCSVVNKEKSIALKTMEDGQ-VLLYSNSVNAGVPKIPYPWLVFNEKIKVNSVFLRDSTGVSDSVLL 992 (1009)
Q Consensus 914 ~~i~~~l~ag~~pnva~~~~~~~~~~~~~~~~~~-v~ihpsSv~~~~~~~~~~~vvy~e~~~t~~~~ir~~t~v~~~~l~ 992 (1009)
--||++|.+|||++||+.... ++|.|+.+++ |.+||++|+.. +|+||+|||++.|+++|||.||.|.|.||+
T Consensus 587 ~nirKALvsgyFmqVA~~~~~---~~Ylt~kdnqvvqLhps~~l~~----~PeWVlyneFvlt~~N~ir~vt~I~pewlv 659 (699)
T KOG0925|consen 587 VNIRKALVSGYFMQVAHLERG---GHYLTVKDNQVVQLHPSTCLDH----KPEWVLYNEFVLTTKNFIRTVTDIRPEWLV 659 (699)
T ss_pred HHHHHHHHHHHHHHHHhhccC---CceEEEecCceEEeccccccCC----CCCeEEEeeEEeeccceeeeecccCHHHHH
Confidence 448999999999999987533 3799998888 67999999863 579999999999999999999999999999
Q ss_pred HhcCccc
Q 001817 993 LFGGNIS 999 (1009)
Q Consensus 993 lfgg~~~ 999 (1009)
..+..+.
T Consensus 660 ~laP~Yy 666 (699)
T KOG0925|consen 660 ELAPQYY 666 (699)
T ss_pred Hhchhhc
Confidence 9998876
No 6
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=100.00 E-value=1.1e-110 Score=1041.05 Aligned_cols=627 Identities=32% Similarity=0.527 Sum_probs=560.1
Q ss_pred HHHhhcCCCCHHHHHHHHHHHHcCCeEEEEecCCCchhhhHHHHHHHHHHHHhcCCceEEEechhHHHHHHHHHHHHHHH
Q 001817 290 MLEFRRSLPSYKERDALLKAISENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAE 369 (1009)
Q Consensus 290 l~~~r~~LPi~~~q~~il~~l~~~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~IvvtqPrR~La~qva~rva~e 369 (1009)
...++.+||++..+++|+++|.+|+++||+|+||||||||+|+++++. +.+..+.|+||||||.+|.++|++|+++
T Consensus 66 ~~~~~~~LPi~~~r~~Il~ai~~~~VviI~GeTGSGKTTqlPq~lle~----g~g~~g~I~~TQPRRlAArsLA~RVA~E 141 (1294)
T PRK11131 66 EITYPENLPVSQKKQDILEAIRDHQVVIVAGETGSGKTTQLPKICLEL----GRGVKGLIGHTQPRRLAARTVANRIAEE 141 (1294)
T ss_pred ccCCCCCCCHHHHHHHHHHHHHhCCeEEEECCCCCCHHHHHHHHHHHc----CCCCCCceeeCCCcHHHHHHHHHHHHHH
Confidence 456788999999999999999999999999999999999999999873 3455678999999999999999999999
Q ss_pred hCCcccceeeeeeeeccccCCCcEEEEEccHHHHHHHhcCCCCCCccEEEEeCCCcCCCcchHHHHHHHHHcccCCCCcE
Q 001817 370 RGEKLGESVGYKVRLEGMKGRDTRLMFCTTGILLRRLLVDRSLRGVTHVIVDEIHERGMNEDFLLIVLKELLPRRPELRL 449 (1009)
Q Consensus 370 ~~~~~g~~vGy~vr~e~~~~~~t~Iiv~T~g~Ll~~L~~~~~l~~is~IIIDEaHeR~~~~d~ll~llk~ll~~~~~lkv 449 (1009)
++..+|..|||.+++++..+.+++|+|||||+|++.+..++.++++++|||||||||++++|+++++++.++..+|++|+
T Consensus 142 l~~~lG~~VGY~vrf~~~~s~~t~I~v~TpG~LL~~l~~d~~Ls~~~~IIIDEAHERsLn~DfLLg~Lk~lL~~rpdlKv 221 (1294)
T PRK11131 142 LETELGGCVGYKVRFNDQVSDNTMVKLMTDGILLAEIQQDRLLMQYDTIIIDEAHERSLNIDFILGYLKELLPRRPDLKV 221 (1294)
T ss_pred HhhhhcceeceeecCccccCCCCCEEEEChHHHHHHHhcCCccccCcEEEecCccccccccchHHHHHHHhhhcCCCceE
Confidence 99999999999999999988999999999999999999999999999999999999999999999999999998899999
Q ss_pred EEeccCCCHHHHHhhhCCCCeeccCCcccceeeEehhhHHHHhhhccCcccccccchhhhHHHHHHHHHHHHhhhhhHHH
Q 001817 450 ILMSATLNAELFSSYFGGAPMLHIPGFTYPVRAYFLENILEMTRYRLNTYNQIDDYGQEKSWKMQKQALALRKRKSSIAS 529 (1009)
Q Consensus 450 IlmSATl~~~~~~~yf~~~pvi~i~g~~~pv~~~yl~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 529 (1009)
|+||||++.+.|++||+++|++.++|+.|||+++|.+... ++ .. .. .+
T Consensus 222 ILmSATid~e~fs~~F~~apvI~V~Gr~~pVei~y~p~~~-------------~~--~~-------------~~----~d 269 (1294)
T PRK11131 222 IITSATIDPERFSRHFNNAPIIEVSGRTYPVEVRYRPIVE-------------EA--DD-------------TE----RD 269 (1294)
T ss_pred EEeeCCCCHHHHHHHcCCCCEEEEcCccccceEEEeeccc-------------cc--ch-------------hh----HH
Confidence 9999999999999999999999999999999998864210 00 00 00 00
Q ss_pred HHHHHHHHhhhcchhhhhhhccccCCCCCcchhhHHHHHHHHHhhcCCCcEEEEcCCHhHHHHHHHHHHcCCCCCCCCCe
Q 001817 530 AVEDALEAADFREYSVQTQQSLSCWNPDSIGFNLIEHVLCHIVKKERPGAVLVFMTGWDDINSLKDQLQAHPLLGDPSRV 609 (1009)
Q Consensus 530 ~v~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~~~~i~~l~~~L~~~~~~~~~~~~ 609 (1009)
.+.. +...+..++ ....|++|||+||..+|+.+++.|..... ...
T Consensus 270 ~l~~------------------------------ll~~V~~l~-~~~~GdILVFLpg~~EIe~lae~L~~~~~----~~~ 314 (1294)
T PRK11131 270 QLQA------------------------------IFDAVDELG-REGPGDILIFMSGEREIRDTADALNKLNL----RHT 314 (1294)
T ss_pred HHHH------------------------------HHHHHHHHh-cCCCCCEEEEcCCHHHHHHHHHHHHhcCC----Ccc
Confidence 0111 111122232 34578999999999999999999987521 245
Q ss_pred EEEEecCCCCHHHHHhhcCCCCCCceEEEEecCccccccCCCCeeEEEeCCCCccccccCCCCCCcccccccCHHhHHhh
Q 001817 610 LLLACHGSMASSEQRLIFDKPEDGVRKIVLATNMAETSITINDVVFVIDCGKAKETSYDALNNTPCLLPSWISKAAARQR 689 (1009)
Q Consensus 610 ~v~~lHs~l~~~er~~v~~~f~~G~~kVLVATniae~GIdIp~V~~VId~g~~k~~~yd~~~~~~~l~~~~iS~as~~QR 689 (1009)
.+.++||+|++++|..+|+. .|.++||||||+||+|||||+|+||||+|+.|.+.||+.+++..+...|||+++|.||
T Consensus 315 ~VlpLhg~Ls~~eQ~~Vf~~--~g~rkIIVATNIAEtSITIpgI~yVID~Gl~k~~~Yd~~~~~~~Lp~~~iSkasa~QR 392 (1294)
T PRK11131 315 EILPLYARLSNSEQNRVFQS--HSGRRIVLATNVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQR 392 (1294)
T ss_pred eEeecccCCCHHHHHHHhcc--cCCeeEEEeccHHhhccccCcceEEEECCCccccccccccCcccCCeeecCHhhHhhh
Confidence 68999999999999999986 5889999999999999999999999999999999999999999999999999999999
Q ss_pred hcccCCCCCCcEEEecchhhhhhhccCCCccccccCchhhhhHhhhcCcCCHHHHHHhhcCCCChhhHHHHHHHHHHhcc
Q 001817 690 RGRAGRVQPGECYHLYPRYVYDAFADYQLPELLRTPLQSLCLQIKSLQLGSISEFLSRALQPPEPLSVKNAIEYLQIIGA 769 (1009)
Q Consensus 690 ~GRAGR~~~G~c~~Lys~~~~~~l~~~~~PEi~r~~L~~~~L~lk~l~~~~~~~fl~~~l~pP~~~~v~~al~~L~~lga 769 (1009)
+|||||.++|.||+||+++.|+.+++++.|||+|++|.+++|+++++|++++..| .|++||+.+++..|++.|..+||
T Consensus 393 aGRAGR~~~G~c~rLyte~d~~~~~~~~~PEIlR~~L~~viL~lk~lgl~di~~F--~fldpP~~~~i~~al~~L~~LgA 470 (1294)
T PRK11131 393 KGRCGRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAF--PFVEAPDKRNIQDGVRLLEELGA 470 (1294)
T ss_pred ccccCCCCCcEEEEeCCHHHHHhhhcccCCccccCCHHHHHHHHHHcCCCCccee--eCCCCCCHHHHHHHHHHHHHCCC
Confidence 9999999999999999999999999999999999999999999999999999999 89999999999999999999999
Q ss_pred ccCC-----CCcChhhhhcccCCCChhHHHHHHHhhhhCCcchHHHHHHhhcCCCccccCcChHHHHHHHHhhhccCChh
Q 001817 770 LDEN-----ENLTVLGRNLSMLPVEPKLGKMLILGAIFNCLDPVMTVVAGLSVRDPFLMPFDKKDLAESAKAQFSARDYS 844 (1009)
Q Consensus 770 ld~~-----~~lT~lG~~ls~lpl~p~~~k~ll~~~~~~c~~~~l~i~a~ls~~~~f~~p~~~~~~~~~~~~~f~~~~~s 844 (1009)
||.+ ++||++|+.|+.||+||++||||+.|+.++|++++++|||+||+.+||..|.++++.++.++++|. +..|
T Consensus 471 ld~~~~~~~~~LT~lG~~la~LPldPrlakmLl~a~~~~c~~evl~IaA~Lsv~dpf~~p~~~~~~a~~~~~~f~-~~~s 549 (1294)
T PRK11131 471 ITTDEQASAYKLTPLGRQLAQLPVDPRLARMVLEAQKHGCVREVMIITSALSIQDPRERPMDKQQASDEKHRRFA-DKES 549 (1294)
T ss_pred CCccccCCCccCcHHHHHHHhCCCChHHHHHHHHhhhcCCHHHHHHHHHHHcCCCcccCCchhHHHHHHHHHhhC-CCCC
Confidence 9864 579999999999999999999999999999999999999999999999999999999999999998 7889
Q ss_pred hHHHHHHHHHHHHHHhh---cccchhhHHHhcCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCcCCCCCCCCHHHHHHHHH
Q 001817 845 DHLALVRAYDGWKDAER---HQSGYEYCWKNFLSAQTLKAIDSLRKQFLFLLKDAGLVDRNTENCNKWSHDEHLIRAVIC 921 (1009)
Q Consensus 845 Dhl~~l~~f~~w~~~~~---~~~~~~~c~~~~l~~~~l~~~~~~r~ql~~~l~~~~~~~~~~~~~~~~s~~~~~i~~~l~ 921 (1009)
||++++|+|+.|.+... .+..++||++||||+.+|+++.++|.||.++++++|+.. |....+++.|++|||
T Consensus 550 D~lt~ln~~~~~~~~~~~~s~~~~~~~C~~~~L~~~~l~e~~~i~~QL~~~~~~~g~~~------~~~~~~~~~i~~all 623 (1294)
T PRK11131 550 DFLAFVNLWNYLQEQQKALSSNQFRRLCRTDYLNYLRVREWQDIYTQLRQVVKELGIPV------NSEPAEYREIHTALL 623 (1294)
T ss_pred CHHHHHHHHHHHHHHHhhhcchHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHcCCCC------CCCcccHHHHHHHHH
Confidence 99999999999986433 222368999999999999999999999999999999853 223356889999999
Q ss_pred hccCCCccccccccccceeEeecCCEEEEecCCCCCCCCCCCCCeEEEeeehhcccceeeeccccCHHHHHHhcCccccC
Q 001817 922 AGLFPGLCSVVNKEKSIALKTMEDGQVLLYSNSVNAGVPKIPYPWLVFNEKIKVNSVFLRDSTGVSDSVLLLFGGNISRG 1001 (1009)
Q Consensus 922 ag~~pnva~~~~~~~~~~~~~~~~~~v~ihpsSv~~~~~~~~~~~vvy~e~~~t~~~~ir~~t~v~~~~l~lfgg~~~~~ 1001 (1009)
+|||+|||+.... ...|.+..+..|.|||+|++++. +|+||||+|++.|++.|+|+||.|+|.||..+++++...
T Consensus 624 ~G~~~nva~~~~~--~~~y~~~~~~~~~ihP~S~L~~~---~p~wvv~~Elv~Tsr~y~r~va~I~p~Wl~~~a~~l~~~ 698 (1294)
T PRK11131 624 TGLLSHIGMKDAE--KQEYTGARNARFSIFPGSGLFKK---PPKWVMVAELVETSRLWGRIAARIEPEWIEPLAQHLIKR 698 (1294)
T ss_pred hhcHHHHeeccCC--CCeEEccCCcEEEEcCCccccCC---CCCEEEEEeeeccChhhhhhhcccCHHHHHHHHHHhccc
Confidence 9999999976532 23588777778999999999864 568999999999999999999999999999999998765
Q ss_pred CC
Q 001817 1002 GL 1003 (1009)
Q Consensus 1002 ~~ 1003 (1009)
+.
T Consensus 699 ~y 700 (1294)
T PRK11131 699 SY 700 (1294)
T ss_pred cC
Confidence 44
No 7
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=100.00 E-value=2.5e-106 Score=1006.51 Aligned_cols=626 Identities=33% Similarity=0.550 Sum_probs=559.3
Q ss_pred HHHHhhcCCCCHHHHHHHHHHHHcCCeEEEEecCCCchhhhHHHHHHHHHHHHhcCCceEEEechhHHHHHHHHHHHHHH
Q 001817 289 KMLEFRRSLPSYKERDALLKAISENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAA 368 (1009)
Q Consensus 289 ~l~~~r~~LPi~~~q~~il~~l~~~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~IvvtqPrR~La~qva~rva~ 368 (1009)
....++..||++.++++|+++|.+|+++||+|+|||||||++|+++++. +.+..++|+|+||||.+|.++|+++++
T Consensus 58 ~~~~~~~~LPi~~~~~~Il~~l~~~~vvii~g~TGSGKTTqlPq~lle~----~~~~~~~I~~tQPRRlAA~svA~RvA~ 133 (1283)
T TIGR01967 58 PEIRYPDNLPVSAKREDIAEAIAENQVVIIAGETGSGKTTQLPKICLEL----GRGSHGLIGHTQPRRLAARTVAQRIAE 133 (1283)
T ss_pred ccccCCCCCCHHHHHHHHHHHHHhCceEEEeCCCCCCcHHHHHHHHHHc----CCCCCceEecCCccHHHHHHHHHHHHH
Confidence 3567788999999999999999999999999999999999999999873 345567999999999999999999999
Q ss_pred HhCCcccceeeeeeeeccccCCCcEEEEEccHHHHHHHhcCCCCCCccEEEEeCCCcCCCcchHHHHHHHHHcccCCCCc
Q 001817 369 ERGEKLGESVGYKVRLEGMKGRDTRLMFCTTGILLRRLLVDRSLRGVTHVIVDEIHERGMNEDFLLIVLKELLPRRPELR 448 (1009)
Q Consensus 369 e~~~~~g~~vGy~vr~e~~~~~~t~Iiv~T~g~Ll~~L~~~~~l~~is~IIIDEaHeR~~~~d~ll~llk~ll~~~~~lk 448 (1009)
++|..+|..|||.+++++..+.+|+|+|||+|+|++.+..++.+.++++|||||||||++++|+++++++.++..++++|
T Consensus 134 elg~~lG~~VGY~vR~~~~~s~~T~I~~~TdGiLLr~l~~d~~L~~~~~IIIDEaHERsL~~D~LL~lLk~il~~rpdLK 213 (1283)
T TIGR01967 134 ELGTPLGEKVGYKVRFHDQVSSNTLVKLMTDGILLAETQQDRFLSRYDTIIIDEAHERSLNIDFLLGYLKQLLPRRPDLK 213 (1283)
T ss_pred HhCCCcceEEeeEEcCCcccCCCceeeeccccHHHHHhhhCcccccCcEEEEcCcchhhccchhHHHHHHHHHhhCCCCe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998899999
Q ss_pred EEEeccCCCHHHHHhhhCCCCeeccCCcccceeeEehhhHHHHhhhccCcccccccchhhhHHHHHHHHHHHHhhhhhHH
Q 001817 449 LILMSATLNAELFSSYFGGAPMLHIPGFTYPVRAYFLENILEMTRYRLNTYNQIDDYGQEKSWKMQKQALALRKRKSSIA 528 (1009)
Q Consensus 449 vIlmSATl~~~~~~~yf~~~pvi~i~g~~~pv~~~yl~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 528 (1009)
+|+||||++.+.|++||+++|++.++|+.|||+++|..... ...+ .+ .
T Consensus 214 lIlmSATld~~~fa~~F~~apvI~V~Gr~~PVev~Y~~~~~----------~~~~---~~----------------~--- 261 (1283)
T TIGR01967 214 IIITSATIDPERFSRHFNNAPIIEVSGRTYPVEVRYRPLVE----------EQED---DD----------------L--- 261 (1283)
T ss_pred EEEEeCCcCHHHHHHHhcCCCEEEECCCcccceeEEecccc----------cccc---hh----------------h---
Confidence 99999999999999999999999999999999998864200 0000 00 0
Q ss_pred HHHHHHHHHhhhcchhhhhhhccccCCCCCcchhhHHHHHHHHHhhcCCCcEEEEcCCHhHHHHHHHHHHcCCCCCCCCC
Q 001817 529 SAVEDALEAADFREYSVQTQQSLSCWNPDSIGFNLIEHVLCHIVKKERPGAVLVFMTGWDDINSLKDQLQAHPLLGDPSR 608 (1009)
Q Consensus 529 ~~v~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~~~~i~~l~~~L~~~~~~~~~~~ 608 (1009)
..+ +.+...+..++.. ..|+||||+||..+|+.+++.|.... ..+
T Consensus 262 ~~~------------------------------~~i~~~I~~l~~~-~~GdILVFLpg~~EI~~l~~~L~~~~----~~~ 306 (1283)
T TIGR01967 262 DQL------------------------------EAILDAVDELFAE-GPGDILIFLPGEREIRDAAEILRKRN----LRH 306 (1283)
T ss_pred hHH------------------------------HHHHHHHHHHHhh-CCCCEEEeCCCHHHHHHHHHHHHhcC----CCC
Confidence 000 0111223333333 46899999999999999999998752 124
Q ss_pred eEEEEecCCCCHHHHHhhcCCCCCCceEEEEecCccccccCCCCeeEEEeCCCCccccccCCCCCCcccccccCHHhHHh
Q 001817 609 VLLLACHGSMASSEQRLIFDKPEDGVRKIVLATNMAETSITINDVVFVIDCGKAKETSYDALNNTPCLLPSWISKAAARQ 688 (1009)
Q Consensus 609 ~~v~~lHs~l~~~er~~v~~~f~~G~~kVLVATniae~GIdIp~V~~VId~g~~k~~~yd~~~~~~~l~~~~iS~as~~Q 688 (1009)
+.+.++||+|+.++|+++|+.+ +.++|||||||||+|||||+|+||||+|++|.+.||+.+++..+...|||+++|.|
T Consensus 307 ~~VlpLhg~Ls~~eQ~~vf~~~--~~rkIVLATNIAEtSLTIpgV~yVIDsGl~r~~~yd~~~~~~~L~~~~ISkasa~Q 384 (1283)
T TIGR01967 307 TEILPLYARLSNKEQQRVFQPH--SGRRIVLATNVAETSLTVPGIHYVIDTGTARISRYSYRTKVQRLPIEPISQASANQ 384 (1283)
T ss_pred cEEEeccCCCCHHHHHHHhCCC--CCceEEEeccHHHhccccCCeeEEEeCCCccccccccccCccccCCccCCHHHHHH
Confidence 6799999999999999999875 35899999999999999999999999999999999999999999999999999999
Q ss_pred hhcccCCCCCCcEEEecchhhhhhhccCCCccccccCchhhhhHhhhcCcCCHHHHHHhhcCCCChhhHHHHHHHHHHhc
Q 001817 689 RRGRAGRVQPGECYHLYPRYVYDAFADYQLPELLRTPLQSLCLQIKSLQLGSISEFLSRALQPPEPLSVKNAIEYLQIIG 768 (1009)
Q Consensus 689 R~GRAGR~~~G~c~~Lys~~~~~~l~~~~~PEi~r~~L~~~~L~lk~l~~~~~~~fl~~~l~pP~~~~v~~al~~L~~lg 768 (1009)
|+|||||.++|.||+||+++.|+.+.+++.|||+|++|.+++|+++++|++++.+| .|++||+..++..|++.|..+|
T Consensus 385 RaGRAGR~~~G~cyRLyte~~~~~~~~~~~PEIlR~~L~~viL~l~~lg~~di~~f--~fldpP~~~~i~~A~~~L~~LG 462 (1283)
T TIGR01967 385 RKGRCGRVAPGICIRLYSEEDFNSRPEFTDPEILRTNLASVILQMLALRLGDIAAF--PFIEAPDPRAIRDGFRLLEELG 462 (1283)
T ss_pred HhhhhCCCCCceEEEecCHHHHHhhhhccCcccccccHHHHHHHHHhcCCCCcccc--cCCCCCCHHHHHHHHHHHHHCC
Confidence 99999999999999999999999999999999999999999999999999999999 8999999999999999999999
Q ss_pred cccCCC---CcChhhhhcccCCCChhHHHHHHHhhhhCCcchHHHHHHhhcCCCccccCcChHHHHHHHHhhhccCChhh
Q 001817 769 ALDENE---NLTVLGRNLSMLPVEPKLGKMLILGAIFNCLDPVMTVVAGLSVRDPFLMPFDKKDLAESAKAQFSARDYSD 845 (1009)
Q Consensus 769 ald~~~---~lT~lG~~ls~lpl~p~~~k~ll~~~~~~c~~~~l~i~a~ls~~~~f~~p~~~~~~~~~~~~~f~~~~~sD 845 (1009)
|||.+| +||++|+.|+.||++|++||||+.|+.++|++++++|||+|++++||..|.++++.++.++++|. +..||
T Consensus 463 Ald~~~~~~~LT~lGr~ma~LPldPrlarmLl~a~~~gcl~e~l~IaA~Ls~~dp~~~p~~~~~~a~~~~~~f~-~~~sD 541 (1283)
T TIGR01967 463 ALDDDEAEPQLTPIGRQLAQLPVDPRLARMLLEAHRLGCLQEVLIIASALSIQDPRERPMEKQQAADQAHARFK-DPRSD 541 (1283)
T ss_pred CCCCCCCCccccHHHHHHhhcCCChHHHHHHHHhhhcCCHHHHHHHHHHHcCCCcCCCcchhHHHHHHHHHHhc-CCCCC
Confidence 999998 79999999999999999999999999999999999999999999999999999999999999998 67899
Q ss_pred HHHHHHHHHHHHHHhhc---ccchhhHHHhcCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCcCCCCCCCCHHHHHHHHHh
Q 001817 846 HLALVRAYDGWKDAERH---QSGYEYCWKNFLSAQTLKAIDSLRKQFLFLLKDAGLVDRNTENCNKWSHDEHLIRAVICA 922 (1009)
Q Consensus 846 hl~~l~~f~~w~~~~~~---~~~~~~c~~~~l~~~~l~~~~~~r~ql~~~l~~~~~~~~~~~~~~~~s~~~~~i~~~l~a 922 (1009)
|++++|+|+.|.+.... +..++||++||||+.+|+++.++++||..++++.|+.. +....++..++++||+
T Consensus 542 ~l~~L~~~~~~~~~~~~~~~~~~~~~C~~~fL~~~~l~~~~~i~~QL~~~~~~~~~~~------~~~~~~~~~i~~~l~~ 615 (1283)
T TIGR01967 542 FLSRVNLWRHIEEQRQALSANQFRNACRKQYLNYLRVREWQDIYRQLTQVVKELGLKL------NEEPADYDAIHKALLS 615 (1283)
T ss_pred HHHHHHHHHHHHHhhhhccchHHHHHHHHcCcCHHHHHHHHHHHHHHHHHHHHcCCCc------CCCCccHHHHHHHHHH
Confidence 99999999999765321 22468999999999999999999999999999988742 2223356679999999
Q ss_pred ccCCCccccccccccceeEeecCCEEEEecCCCCCCCCCCCCCeEEEeeehhcccceeeeccccCHHHHHHhcCccccCC
Q 001817 923 GLFPGLCSVVNKEKSIALKTMEDGQVLLYSNSVNAGVPKIPYPWLVFNEKIKVNSVFLRDSTGVSDSVLLLFGGNISRGG 1002 (1009)
Q Consensus 923 g~~pnva~~~~~~~~~~~~~~~~~~v~ihpsSv~~~~~~~~~~~vvy~e~~~t~~~~ir~~t~v~~~~l~lfgg~~~~~~ 1002 (1009)
||++|||+... ...|.+..+..+.|||+|++++. +++||||+|++.|++.|||++|.|+|.||..+++++....
T Consensus 616 g~~~~iA~~~~---~~~y~~~~g~~~~ihP~S~L~~~---~p~wvv~~elv~t~~~~ir~~a~I~p~wl~~~~~~~~~~~ 689 (1283)
T TIGR01967 616 GLLSQIGMKDE---KHEYDGARGRKFHIFPGSPLFKK---PPKWVMAAELVETSKLYARLVAKIEPEWVEPVAGHLIKKN 689 (1283)
T ss_pred hhHHHHheeCC---CCcEEecCCcEEEECCCccccCC---CCCEEEEeeecccchheEeeeccCCHHHHHHHhHHHhEec
Confidence 99999997643 23688888778999999999863 4689999999999999999999999999999999987655
No 8
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=100.00 E-value=5.2e-103 Score=943.77 Aligned_cols=634 Identities=39% Similarity=0.580 Sum_probs=553.3
Q ss_pred ChhhHHHHHhhcCCCCHHHHHHHHHHHHcCCeEEEEecCCCchhhhHHHHHHHHHHHHhcCCceEEEechhHHHHHHHHH
Q 001817 284 SPEGQKMLEFRRSLPSYKERDALLKAISENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVS 363 (1009)
Q Consensus 284 ~~~~~~l~~~r~~LPi~~~q~~il~~l~~~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~IvvtqPrR~La~qva 363 (1009)
+.....+..++..||++..+.+|++++.+++++||+||||||||||+|+++++..+ +..++|+||||||++|.++|
T Consensus 36 ~~~~~~~~~~~~~LPv~~~~~~i~~ai~~~~vvii~getGsGKTTqlP~~lle~g~----~~~g~I~~tQPRRlAArsvA 111 (845)
T COG1643 36 SANVPDILEYRSGLPVTAVRDEILKAIEQNQVVIIVGETGSGKTTQLPQFLLEEGL----GIAGKIGCTQPRRLAARSVA 111 (845)
T ss_pred ccccchhhhccccCCcHHHHHHHHHHHHhCCEEEEeCCCCCChHHHHHHHHHhhhc----ccCCeEEecCchHHHHHHHH
Confidence 45566788999999999999999999999999999999999999999999998654 55679999999999999999
Q ss_pred HHHHHHhCCcccceeeeeeeeccccCCCcEEEEEccHHHHHHHhcCCCCCCccEEEEeCCCcCCCcchHHHHHHHHHccc
Q 001817 364 ERVAAERGEKLGESVGYKVRLEGMKGRDTRLMFCTTGILLRRLLVDRSLRGVTHVIVDEIHERGMNEDFLLIVLKELLPR 443 (1009)
Q Consensus 364 ~rva~e~~~~~g~~vGy~vr~e~~~~~~t~Iiv~T~g~Ll~~L~~~~~l~~is~IIIDEaHeR~~~~d~ll~llk~ll~~ 443 (1009)
+|+++++|+++|..|||.+|+++..+.+|+|.|+|+|+|+++++.|+.|+.|++|||||+|||++++|++++++++++..
T Consensus 112 ~RvAeel~~~~G~~VGY~iRfe~~~s~~Trik~mTdGiLlrei~~D~~Ls~ys~vIiDEaHERSl~tDilLgllk~~~~~ 191 (845)
T COG1643 112 ERVAEELGEKLGETVGYSIRFESKVSPRTRIKVMTDGILLREIQNDPLLSGYSVVIIDEAHERSLNTDILLGLLKDLLAR 191 (845)
T ss_pred HHHHHHhCCCcCceeeEEEEeeccCCCCceeEEeccHHHHHHHhhCcccccCCEEEEcchhhhhHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998876
Q ss_pred CC-CCcEEEeccCCCHHHHHhhhCCCCeeccCCcccceeeEehhhHHHHhhhccCcccccccchhhhHHHHHHHHHHHHh
Q 001817 444 RP-ELRLILMSATLNAELFSSYFGGAPMLHIPGFTYPVRAYFLENILEMTRYRLNTYNQIDDYGQEKSWKMQKQALALRK 522 (1009)
Q Consensus 444 ~~-~lkvIlmSATl~~~~~~~yf~~~pvi~i~g~~~pv~~~yl~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 522 (1009)
++ ++|+|+||||+|.+.|++||+++|++.++|++|||+++|.+... .++.
T Consensus 192 rr~DLKiIimSATld~~rfs~~f~~apvi~i~GR~fPVei~Y~~~~~-------------~d~~---------------- 242 (845)
T COG1643 192 RRDDLKLIIMSATLDAERFSAYFGNAPVIEIEGRTYPVEIRYLPEAE-------------ADYI---------------- 242 (845)
T ss_pred cCCCceEEEEecccCHHHHHHHcCCCCEEEecCCccceEEEecCCCC-------------cchh----------------
Confidence 65 79999999999999999999999999999999999999976421 0000
Q ss_pred hhhhHHHHHHHHHHHhhhcchhhhhhhccccCCCCCcchhhHHHHHHHHHhhcCCCcEEEEcCCHhHHHHHHHHHHcCCC
Q 001817 523 RKSSIASAVEDALEAADFREYSVQTQQSLSCWNPDSIGFNLIEHVLCHIVKKERPGAVLVFMTGWDDINSLKDQLQAHPL 602 (1009)
Q Consensus 523 ~~~~~~~~v~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~~~~i~~l~~~L~~~~~ 602 (1009)
+++++. . ...++.....|+||||+||.++|+.+++.|.+. .
T Consensus 243 --------l~~ai~-----------------------------~-~v~~~~~~~~GdILvFLpG~~EI~~~~~~L~~~-~ 283 (845)
T COG1643 243 --------LLDAIV-----------------------------A-AVDIHLREGSGSILVFLPGQREIERTAEWLEKA-E 283 (845)
T ss_pred --------HHHHHH-----------------------------H-HHHHhccCCCCCEEEECCcHHHHHHHHHHHHhc-c
Confidence 111111 1 223334456899999999999999999999982 1
Q ss_pred CCCCCCeEEEEecCCCCHHHHHhhcCCCCCCceEEEEecCccccccCCCCeeEEEeCCCCccccccCCCCCCcccccccC
Q 001817 603 LGDPSRVLLLACHGSMASSEQRLIFDKPEDGVRKIVLATNMAETSITINDVVFVIDCGKAKETSYDALNNTPCLLPSWIS 682 (1009)
Q Consensus 603 ~~~~~~~~v~~lHs~l~~~er~~v~~~f~~G~~kVLVATniae~GIdIp~V~~VId~g~~k~~~yd~~~~~~~l~~~~iS 682 (1009)
++ ..+.|+|+||.|+.++|.++|+..+.|++|||+||||||||||||+|+||||+|+.|.+.||+.+++..|.++|||
T Consensus 284 l~--~~~~i~PLy~~L~~~eQ~rvF~p~~~~~RKVVlATNIAETSLTI~gIr~VIDsG~ak~~~y~~~~g~~~L~~~~IS 361 (845)
T COG1643 284 LG--DDLEILPLYGALSAEEQVRVFEPAPGGKRKVVLATNIAETSLTIPGIRYVIDSGLAKEKRYDPRTGLTRLETEPIS 361 (845)
T ss_pred cc--CCcEEeeccccCCHHHHHhhcCCCCCCcceEEEEccccccceeeCCeEEEecCCcccccccccccCceeeeEEEec
Confidence 22 3688999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhHHhhhcccCCCCCCcEEEecchhhhhhhccCCCccccccCchhhhhHhhhcCcC-CHHHHHHhhcCCCChhhHHHHH
Q 001817 683 KAAARQRRGRAGRVQPGECYHLYPRYVYDAFADYQLPELLRTPLQSLCLQIKSLQLG-SISEFLSRALQPPEPLSVKNAI 761 (1009)
Q Consensus 683 ~as~~QR~GRAGR~~~G~c~~Lys~~~~~~l~~~~~PEi~r~~L~~~~L~lk~l~~~-~~~~fl~~~l~pP~~~~v~~al 761 (1009)
+|++.||+|||||++||+||+||+++.|..|..++.|||+|++|++++|+++++|++ ++..| .|+|||+..++..|+
T Consensus 362 qAsA~QRaGRAGR~~pGicyRLyse~~~~~~~~~t~PEIlrtdLs~~vL~l~~~G~~~d~~~f--~fld~P~~~~i~~A~ 439 (845)
T COG1643 362 KASADQRAGRAGRTGPGICYRLYSEEDFLAFPEFTLPEILRTDLSGLVLQLKSLGIGQDIAPF--PFLDPPPEAAIQAAL 439 (845)
T ss_pred hhhhhhhccccccCCCceEEEecCHHHHHhcccCCChhhhhcchHHHHHHHHhcCCCCCcccC--ccCCCCChHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999996 99999 999999999999999
Q ss_pred HHHHHhccccCCCCcChhhhhcccCCCChhHHHHHHHhhhhCCcchHHHHHHhhcCCC---ccccCcChHH---HHHHHH
Q 001817 762 EYLQIIGALDENENLTVLGRNLSMLPVEPKLGKMLILGAIFNCLDPVMTVVAGLSVRD---PFLMPFDKKD---LAESAK 835 (1009)
Q Consensus 762 ~~L~~lgald~~~~lT~lG~~ls~lpl~p~~~k~ll~~~~~~c~~~~l~i~a~ls~~~---~f~~p~~~~~---~~~~~~ 835 (1009)
+.|..+||||.+|.||++|+.|+.||+||++|+||+.+..++|++++++|||+|++.+ .|..+.+.++ ....++
T Consensus 440 ~~L~~LGAld~~g~LT~lG~~ms~lpldprLA~mLl~a~~~g~~~e~~~Ias~Ls~~~~~s~~~~~~~~~~~~~~~~~~~ 519 (845)
T COG1643 440 TLLQELGALDDSGKLTPLGKQMSLLPLDPRLARMLLTAPEGGCLGEAATIASMLSEQDRESDFSRDVKLRKQRTAQDLLK 519 (845)
T ss_pred HHHHHcCCcCCCCCCCHHHHHHHhCCCChHHHHHHHhccccCcHHHHHHHHHhhccCCCcchhccccchhhHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999998 6887776655 333333
Q ss_pred -hhhc--cCChhhHHHHHHHHHHHHHHhhc---ccchhhHHHhcCCHHHHHHHHHHHHHHHHHHHH-cCCCCCC--Cc--
Q 001817 836 -AQFS--ARDYSDHLALVRAYDGWKDAERH---QSGYEYCWKNFLSAQTLKAIDSLRKQFLFLLKD-AGLVDRN--TE-- 904 (1009)
Q Consensus 836 -~~f~--~~~~sDhl~~l~~f~~w~~~~~~---~~~~~~c~~~~l~~~~l~~~~~~r~ql~~~l~~-~~~~~~~--~~-- 904 (1009)
..+. ....+||++++++|..|...+.. .....||..++++.++|.++..++.+++..... .+.+... ..
T Consensus 520 ~l~~~~~~~~~~d~~~ll~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~ 599 (845)
T COG1643 520 RLKRRNAADPRGDHLLLLEAFPDRIARKRAKGEYLRANGCRAMLFPTKALSRAPWIIAALLVQTSALAGRILAAAEIDED 599 (845)
T ss_pred HHHhccCCCcchHHHHHHHHHHHHHHhhhccchhhHhcChhhhcCChhHHHhhHHHHHHHHHhhhccccchhhhcccCcc
Confidence 2232 23689999999999999877631 134689999999999999999999999888777 4432211 00
Q ss_pred ---------CCCCCCCCHHHHHHHHHhccCCCccccccccccceeEeecC-CEEEEecCCCCCCCCCCCCCeEEEeeehh
Q 001817 905 ---------NCNKWSHDEHLIRAVICAGLFPGLCSVVNKEKSIALKTMED-GQVLLYSNSVNAGVPKIPYPWLVFNEKIK 974 (1009)
Q Consensus 905 ---------~~~~~s~~~~~i~~~l~ag~~pnva~~~~~~~~~~~~~~~~-~~v~ihpsSv~~~~~~~~~~~vvy~e~~~ 974 (1009)
.+-.+. .|+.++.++++|++.|++.+.... ..|++..+ ..|.+||+||. .....++|++|++.+.
T Consensus 600 ~~~~~~~~~~~~~~~-~~d~~~~~l~a~~~~~~~~~~~~~--~~~~~~~~~~~v~~~~~~v~--~~~~~~~~~~~~~~~~ 674 (845)
T COG1643 600 EWAAQHLPEHCYSEP-IWDDIRGALAAGRKLNIAQLQLDG--RPYVTLSDNTPVFAHPSSVR--LGLVLLEWIKYAEFLR 674 (845)
T ss_pred hhhhhhhhhhhccch-hHHHHhhhhhhheecceeeeeccc--cccccCCCCceeEecchhHh--hcccCcchHHHHHHHH
Confidence 001111 478899999999999999876433 24777765 56999999972 2234579999999999
Q ss_pred cccceee-----------eccccCHHHHHHhcCcc
Q 001817 975 VNSVFLR-----------DSTGVSDSVLLLFGGNI 998 (1009)
Q Consensus 975 t~~~~ir-----------~~t~v~~~~l~lfgg~~ 998 (1009)
+++.|++ .++.+.+.||.-+....
T Consensus 675 ~~~~~~~~~~~~~~~~~~~l~~~~~~wL~~~~~~~ 709 (845)
T COG1643 675 TRKGYLREGRGERWPDVQTLIELLKLWLKEQVKGL 709 (845)
T ss_pred HHHHHHhhcccccCcccchHhhhHHHhhhhhcccc
Confidence 9999999 58999999998887643
No 9
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=4.6e-101 Score=873.22 Aligned_cols=634 Identities=34% Similarity=0.569 Sum_probs=546.1
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHHHcCCeEEEEecCCCchhhhHHHHHHHHHHHHhc-CCceEEEechhHHHHHHHHHHHH
Q 001817 288 QKMLEFRRSLPSYKERDALLKAISENQVVVVSGETGCGKTTQLPQYILESETEAAR-GAACSIICTQPRRISAMAVSERV 366 (1009)
Q Consensus 288 ~~l~~~r~~LPi~~~q~~il~~l~~~~~vII~apTGSGKTt~~~~~ile~~~~~~~-~~~~~IvvtqPrR~La~qva~rv 366 (1009)
.++.+.|..||+....+.|+++|..|.+|||||+||||||||+|||+++....... ...+.|-+|||||.+|+.+|+||
T Consensus 246 ~EIQ~sR~~LPI~aeEq~IMEaIn~n~vvIIcGeTGsGKTTQvPQFLYEAGf~s~~~~~~gmIGITqPRRVAaiamAkRV 325 (1172)
T KOG0926|consen 246 AEIQESRLDLPIVAEEQRIMEAINENPVVIICGETGSGKTTQVPQFLYEAGFASEQSSSPGMIGITQPRRVAAIAMAKRV 325 (1172)
T ss_pred HHHHHHHhcCchhHHHHHHHHHhhcCCeEEEecCCCCCccccchHHHHHcccCCccCCCCCeeeecCchHHHHHHHHHHH
Confidence 46889999999999999999999999999999999999999999999997764332 22569999999999999999999
Q ss_pred HHHhCCcccceeeeeeeeccccCCCcEEEEEccHHHHHHHhcCCCCCCccEEEEeCCCcCCCcchHHHHHHHHHcccC--
Q 001817 367 AAERGEKLGESVGYKVRLEGMKGRDTRLMFCTTGILLRRLLVDRSLRGVTHVIVDEIHERGMNEDFLLIVLKELLPRR-- 444 (1009)
Q Consensus 367 a~e~~~~~g~~vGy~vr~e~~~~~~t~Iiv~T~g~Ll~~L~~~~~l~~is~IIIDEaHeR~~~~d~ll~llk~ll~~~-- 444 (1009)
+.|+|. +|..|||++|+++..+++|.|.|||+|+||+.+.+|..|..|++|||||||||++++|+|+++|.++.+.|
T Consensus 326 a~EL~~-~~~eVsYqIRfd~ti~e~T~IkFMTDGVLLrEi~~DflL~kYSvIIlDEAHERSvnTDILiGmLSRiV~LR~k 404 (1172)
T KOG0926|consen 326 AFELGV-LGSEVSYQIRFDGTIGEDTSIKFMTDGVLLREIENDFLLTKYSVIILDEAHERSVNTDILIGMLSRIVPLRQK 404 (1172)
T ss_pred HHHhcc-CccceeEEEEeccccCCCceeEEecchHHHHHHHHhHhhhhceeEEechhhhccchHHHHHHHHHHHHHHHHH
Confidence 999998 99999999999999999999999999999999999999999999999999999999999999999987643
Q ss_pred --------CCCcEEEeccCCCHHHHHh---hhC-CCCeeccCCcccceeeEehhhHHHHhhhccCcccccccchhhhHHH
Q 001817 445 --------PELRLILMSATLNAELFSS---YFG-GAPMLHIPGFTYPVRAYFLENILEMTRYRLNTYNQIDDYGQEKSWK 512 (1009)
Q Consensus 445 --------~~lkvIlmSATl~~~~~~~---yf~-~~pvi~i~g~~~pv~~~yl~~i~~~~~~~~~~~~~i~~~~~~~~~~ 512 (1009)
..+|+|+||||+..++|.+ .|. ..|++.++.|+|||.++|... .-++|
T Consensus 405 ~~ke~~~~kpLKLIIMSATLRVsDFtenk~LFpi~pPlikVdARQfPVsIHF~kr-------------T~~DY------- 464 (1172)
T KOG0926|consen 405 YYKEQCQIKPLKLIIMSATLRVSDFTENKRLFPIPPPLIKVDARQFPVSIHFNKR-------------TPDDY------- 464 (1172)
T ss_pred HhhhhcccCceeEEEEeeeEEecccccCceecCCCCceeeeecccCceEEEeccC-------------CCchH-------
Confidence 2689999999999888873 555 578999999999999999643 11122
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHhhhcchhhhhhhccccCCCCCcchhhHHHHHHHHHhhcCCCcEEEEcCCHhHHHH
Q 001817 513 MQKQALALRKRKSSIASAVEDALEAADFREYSVQTQQSLSCWNPDSIGFNLIEHVLCHIVKKERPGAVLVFMTGWDDINS 592 (1009)
Q Consensus 513 ~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~~~~i~~ 592 (1009)
+.+++. -.+.|+++.+.|.||||++|..++..
T Consensus 465 ------------------i~eAfr------------------------------Ktc~IH~kLP~G~ILVFvTGQqEV~q 496 (1172)
T KOG0926|consen 465 ------------------IAEAFR------------------------------KTCKIHKKLPPGGILVFVTGQQEVDQ 496 (1172)
T ss_pred ------------------HHHHHH------------------------------HHHHHhhcCCCCcEEEEEeChHHHHH
Confidence 222221 25678888999999999999999999
Q ss_pred HHHHHHcCCC--C-------------------------------------------------------------------
Q 001817 593 LKDQLQAHPL--L------------------------------------------------------------------- 603 (1009)
Q Consensus 593 l~~~L~~~~~--~------------------------------------------------------------------- 603 (1009)
+++.|++... +
T Consensus 497 L~~kLRK~~p~~f~~~k~~k~~k~~~e~k~~~s~~~~~~k~~dfe~Ed~~~~~ed~d~~~~~~~~~~~raa~~~~~De~~ 576 (1172)
T KOG0926|consen 497 LCEKLRKRFPESFGGVKMKKNVKAFKELKENPSDIGDSNKTDDFEEEDMYESDEDIDQELVDSGFASLRAAFNALADENG 576 (1172)
T ss_pred HHHHHHhhCccccccchhhhhhhhccccccchhhhccCcccccchhcccccchhhhhhhhhcccchhhhhhhhccccccc
Confidence 9999986311 0
Q ss_pred -----------------------CCCCCeEEEEecCCCCHHHHHhhcCCCCCCceEEEEecCccccccCCCCeeEEEeCC
Q 001817 604 -----------------------GDPSRVLLLACHGSMASSEQRLIFDKPEDGVRKIVLATNMAETSITINDVVFVIDCG 660 (1009)
Q Consensus 604 -----------------------~~~~~~~v~~lHs~l~~~er~~v~~~f~~G~~kVLVATniae~GIdIp~V~~VId~g 660 (1009)
..+..+.|+++++-|+.++|.+||+..+.|.+-+|||||+||+++|||+|+||||||
T Consensus 577 ~~nge~e~d~~e~~~E~~~~~~~~~~~pLyvLPLYSLLs~~~Q~RVF~~~p~g~RLcVVaTNVAETSLTIPgIkYVVD~G 656 (1172)
T KOG0926|consen 577 SVNGEPEKDESEEGQEAEQGKGKFSPGPLYVLPLYSLLSTEKQMRVFDEVPKGERLCVVATNVAETSLTIPGIKYVVDCG 656 (1172)
T ss_pred cccCCcccchhhhchhhhhccCCCCCCceEEeehhhhcCHHHhhhhccCCCCCceEEEEeccchhcccccCCeeEEEecc
Confidence 112256799999999999999999999999999999999999999999999999999
Q ss_pred CCccccccCCCCCCcccccccCHHhHHhhhcccCCCCCCcEEEecchhhhh-hhccCCCccccccCchhhhhHhhhcCcC
Q 001817 661 KAKETSYDALNNTPCLLPSWISKAAARQRRGRAGRVQPGECYHLYPRYVYD-AFADYQLPELLRTPLQSLCLQIKSLQLG 739 (1009)
Q Consensus 661 ~~k~~~yd~~~~~~~l~~~~iS~as~~QR~GRAGR~~~G~c~~Lys~~~~~-~l~~~~~PEi~r~~L~~~~L~lk~l~~~ 739 (1009)
+.|+..||..+|++.+...|||+|++-||+|||||.+||+|||||+...|+ .|+++..|||++.|.++++|++|+|++.
T Consensus 657 r~K~R~Yd~~TGV~~FeV~wiSkASadQRAGRAGRtgpGHcYRLYSSAVf~~~Fe~fS~PEIlk~Pve~lvLqMKsMnI~ 736 (1172)
T KOG0926|consen 657 RVKERLYDSKTGVSSFEVDWISKASADQRAGRAGRTGPGHCYRLYSSAVFSNDFEEFSLPEILKKPVESLVLQMKSMNID 736 (1172)
T ss_pred chhhhccccccCceeEEEEeeeccccchhccccCCCCCCceeehhhhHHhhcchhhhccHHHhhCcHHHHHHHHHhcCcc
Confidence 999999999999999999999999999999999999999999999999998 5999999999999999999999999999
Q ss_pred CHHHHHHhhcCCCChhhHHHHHHHHHHhccccCCCCcChhhhhcccCCCChhHHHHHHHhhhhCCcchHHHHHHhhcCCC
Q 001817 740 SISEFLSRALQPPEPLSVKNAIEYLQIIGALDENENLTVLGRNLSMLPVEPKLGKMLILGAIFNCLDPVMTVVAGLSVRD 819 (1009)
Q Consensus 740 ~~~~fl~~~l~pP~~~~v~~al~~L~~lgald~~~~lT~lG~~ls~lpl~p~~~k~ll~~~~~~c~~~~l~i~a~ls~~~ 819 (1009)
.+.+| .|++||+..+++.|.+.|..+||||.+|.||+||+.||.||+.|+.||||+.+...+|+.-++.++++||+..
T Consensus 737 kVvnF--PFPtpPd~~~L~~Aer~L~~LgALd~~g~lT~lGk~mS~FPlsPrfsKmL~~~~Q~~~lpy~i~lvsaLsv~e 814 (1172)
T KOG0926|consen 737 KVVNF--PFPTPPDRSALEKAERRLKALGALDSNGGLTKLGKAMSLFPLSPRFSKMLATSDQHNLLPYNIALVSALSVYE 814 (1172)
T ss_pred ceecC--CCCCCccHHHHHHHHHHHHHhccccccCCcccccchhcccccChhHHHHHHHHHhhcchhHHHHHHHHHhccc
Confidence 99999 9999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCc-------------ChHH-------------------HHHHHHhhhccCChhhHHHHHHHHHHHHHHhhcccchh
Q 001817 820 PFLMPF-------------DKKD-------------------LAESAKAQFSARDYSDHLALVRAYDGWKDAERHQSGYE 867 (1009)
Q Consensus 820 ~f~~p~-------------~~~~-------------------~~~~~~~~f~~~~~sDhl~~l~~f~~w~~~~~~~~~~~ 867 (1009)
+|+.-. ++++ ....++.+|+ ...||-|.++.|-..+..+.. ...
T Consensus 815 ~~i~~~~ll~n~~~r~~~~eE~d~~~~de~~~d~~~K~~rr~~~~aa~~rf~-~l~sd~l~Ll~Av~a~ey~~~---~~r 890 (1172)
T KOG0926|consen 815 VLIVAASLLPNPLIREFEPEEKDLIKDDETVEDKELKKRRREKSKAARSRFS-NLDSDALVLLSAVSAAEYAEN---GMR 890 (1172)
T ss_pred hhhhhhhcccccccccCCcchhhccccccccccHHHHHHHHHHHHHHHhhhc-cCCccHHHHHHHHHHHHhhhh---cch
Confidence 886411 1111 1223566776 455999999999988876643 346
Q ss_pred hHHHhcCCHHHHHHHHHHHHHHHHHHHHcCCCC---CCCcCCC-CCCCCHHHHHHHHHhccCCCccccccccccceeE-e
Q 001817 868 YCWKNFLSAQTLKAIDSLRKQFLFLLKDAGLVD---RNTENCN-KWSHDEHLIRAVICAGLFPGLCSVVNKEKSIALK-T 942 (1009)
Q Consensus 868 ~c~~~~l~~~~l~~~~~~r~ql~~~l~~~~~~~---~~~~~~~-~~s~~~~~i~~~l~ag~~pnva~~~~~~~~~~~~-~ 942 (1009)
||.+|+|..++|.++.++|+||..++...+.-. +...... +......+++..|||||-..||+.+... .|- +
T Consensus 891 fc~~ngLr~Kam~Ev~KLR~QL~~lv~~~~i~~v~~~~d~~l~ppt~~q~~lLrQ~i~Ag~~DrVArk~~~~---~y~~~ 967 (1172)
T KOG0926|consen 891 FCEANGLRLKAMEEVRKLRKQLTNLVNHGNIQDVEKSWDLTLKPPTDTQAKLLRQMICAGFADRVARKVDAT---EYDAA 967 (1172)
T ss_pred hHHhcchHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcccCCCCCchHHHHHHHHHHHHHHHHHHHHhcccc---ccchh
Confidence 999999999999999999999999998543211 0000111 1122456899999999999999754322 243 2
Q ss_pred ecCCEEEEecCCCCCCCCCCCCCeEEEeeehhcccceeee-ccccCHHHHHHhcCccccCC
Q 001817 943 MEDGQVLLYSNSVNAGVPKIPYPWLVFNEKIKVNSVFLRD-STGVSDSVLLLFGGNISRGG 1002 (1009)
Q Consensus 943 ~~~~~v~ihpsSv~~~~~~~~~~~vvy~e~~~t~~~~ir~-~t~v~~~~l~lfgg~~~~~~ 1002 (1009)
.-.+.|+|||+||+.+. .|+||+|.|++.|+..||.+ +|.|.|.||+..++.+..-.
T Consensus 968 ~i~~~~fl~~~svl~~~---ape~viY~el~~~~~~~~~~~v~~v~pewl~~~~~slcn~~ 1025 (1172)
T KOG0926|consen 968 KIQEPVFLHRWSVLINS---APELVIYQELLLTNRPYMHGGVTAVRPEWLLNHAKSLCNFS 1025 (1172)
T ss_pred hhcCceeeeehhhhhcc---CccceehhhhhhcCCcccccceEEEchHHHHhhhhhhcccc
Confidence 34678999999999864 46999999999999887765 99999999999998776443
No 10
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=100.00 E-value=4.5e-83 Score=784.22 Aligned_cols=572 Identities=28% Similarity=0.404 Sum_probs=477.4
Q ss_pred CCCHHHHHHHHHHHHcCCeEEEEecCCCchhhhHHHHHHHHHHHHhcCCceEEEechhHHHHHHHHHHHHHHHhCCcccc
Q 001817 297 LPSYKERDALLKAISENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERGEKLGE 376 (1009)
Q Consensus 297 LPi~~~q~~il~~l~~~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~IvvtqPrR~La~qva~rva~e~~~~~g~ 376 (1009)
||++.+..+|+++|.+|+++||+|+|||||||++|+++++... ..++|+|++|||++|.|+++++++++++.+|.
T Consensus 1 LPi~~~~~~i~~~l~~~~~vIi~a~TGSGKTT~vpl~lL~~~~-----~~~~ilvlqPrR~aA~qiA~rva~~~~~~~g~ 75 (819)
T TIGR01970 1 LPIHAVLPALRDALAAHPQVVLEAPPGAGKSTAVPLALLDAPG-----IGGKIIMLEPRRLAARSAAQRLASQLGEAVGQ 75 (819)
T ss_pred CCchHHHHHHHHHHHcCCcEEEECCCCCCHHHHHHHHHHHhhc-----cCCeEEEEeCcHHHHHHHHHHHHHHhCCCcCc
Confidence 7999999999999999999999999999999999999998652 34689999999999999999999999999999
Q ss_pred eeeeeeeeccccCCCcEEEEEccHHHHHHHhcCCCCCCccEEEEeCCCcCCCcchHHHHHHHHHcc-cCCCCcEEEeccC
Q 001817 377 SVGYKVRLEGMKGRDTRLMFCTTGILLRRLLVDRSLRGVTHVIVDEIHERGMNEDFLLIVLKELLP-RRPELRLILMSAT 455 (1009)
Q Consensus 377 ~vGy~vr~e~~~~~~t~Iiv~T~g~Ll~~L~~~~~l~~is~IIIDEaHeR~~~~d~ll~llk~ll~-~~~~lkvIlmSAT 455 (1009)
.|||.+++++..+.+++|+|+|+|+|++.+..++.++++++|||||+|||++++|+.+++++.+.. .++++|+|+||||
T Consensus 76 ~VGy~vr~~~~~s~~t~I~v~T~G~Llr~l~~d~~L~~v~~VIiDEaHER~L~~Dl~L~ll~~i~~~lr~dlqlIlmSAT 155 (819)
T TIGR01970 76 TVGYRVRGENKVSRRTRLEVVTEGILTRMIQDDPELDGVGALIFDEFHERSLDADLGLALALDVQSSLREDLKILAMSAT 155 (819)
T ss_pred EEEEEEccccccCCCCcEEEECCcHHHHHHhhCcccccCCEEEEeccchhhhccchHHHHHHHHHHhcCCCceEEEEeCC
Confidence 999999999988888999999999999999999999999999999999999999999888887765 5688999999999
Q ss_pred CCHHHHHhhhCCCCeeccCCcccceeeEehhhHHHHhhhccCcccccccchhhhHHHHHHHHHHHHhhhhhHHHHHHHHH
Q 001817 456 LNAELFSSYFGGAPMLHIPGFTYPVRAYFLENILEMTRYRLNTYNQIDDYGQEKSWKMQKQALALRKRKSSIASAVEDAL 535 (1009)
Q Consensus 456 l~~~~~~~yf~~~pvi~i~g~~~pv~~~yl~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l 535 (1009)
++.+.|.+||++++++.++|+.|||+.+|++... ... +...
T Consensus 156 l~~~~l~~~l~~~~vI~~~gr~~pVe~~y~~~~~----------------------------------~~~----~~~~- 196 (819)
T TIGR01970 156 LDGERLSSLLPDAPVVESEGRSFPVEIRYLPLRG----------------------------------DQR----LEDA- 196 (819)
T ss_pred CCHHHHHHHcCCCcEEEecCcceeeeeEEeecch----------------------------------hhh----HHHH-
Confidence 9999999999999999999999999999864200 000 0000
Q ss_pred HHhhhcchhhhhhhccccCCCCCcchhhHHHHHHHHHhhcCCCcEEEEcCCHhHHHHHHHHHHcCCCCCCCCCeEEEEec
Q 001817 536 EAADFREYSVQTQQSLSCWNPDSIGFNLIEHVLCHIVKKERPGAVLVFMTGWDDINSLKDQLQAHPLLGDPSRVLLLACH 615 (1009)
Q Consensus 536 ~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~~~~i~~l~~~L~~~~~~~~~~~~~v~~lH 615 (1009)
+...+.+++.. ..|++|||+||+.+|+.+++.|.... + .++.+.++|
T Consensus 197 ----------------------------v~~~l~~~l~~-~~g~iLVFlpg~~eI~~l~~~L~~~~--~--~~~~v~pLH 243 (819)
T TIGR01970 197 ----------------------------VSRAVEHALAS-ETGSILVFLPGQAEIRRVQEQLAERL--D--SDVLICPLY 243 (819)
T ss_pred ----------------------------HHHHHHHHHHh-cCCcEEEEECCHHHHHHHHHHHHhhc--C--CCcEEEEec
Confidence 00112233332 36899999999999999999998631 1 367899999
Q ss_pred CCCCHHHHHhhcCCCCCCceEEEEecCccccccCCCCeeEEEeCCCCccccccCCCCCCcccccccCHHhHHhhhcccCC
Q 001817 616 GSMASSEQRLIFDKPEDGVRKIVLATNMAETSITINDVVFVIDCGKAKETSYDALNNTPCLLPSWISKAAARQRRGRAGR 695 (1009)
Q Consensus 616 s~l~~~er~~v~~~f~~G~~kVLVATniae~GIdIp~V~~VId~g~~k~~~yd~~~~~~~l~~~~iS~as~~QR~GRAGR 695 (1009)
|+|+.++|.++++.|++|+++|||||||||+|||||+|++|||+|+++...||+.++++.|.+.|||+++|.||+|||||
T Consensus 244 g~L~~~eq~~~~~~~~~G~rkVlVATnIAErgItIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRAGR 323 (819)
T TIGR01970 244 GELSLAAQDRAIKPDPQGRRKVVLATNIAETSLTIEGIRVVIDSGLARVARFDPKTGITRLETVRISQASATQRAGRAGR 323 (819)
T ss_pred CCCCHHHHHHHHhhcccCCeEEEEecchHhhcccccCceEEEEcCcccccccccccCCceeeEEEECHHHHHhhhhhcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcEEEecchhhhhhhccCCCccccccCchhhhhHhhhcCcCCHHHHHHhhcCCCChhhHHHHHHHHHHhccccCCCC
Q 001817 696 VQPGECYHLYPRYVYDAFADYQLPELLRTPLQSLCLQIKSLQLGSISEFLSRALQPPEPLSVKNAIEYLQIIGALDENEN 775 (1009)
Q Consensus 696 ~~~G~c~~Lys~~~~~~l~~~~~PEi~r~~L~~~~L~lk~l~~~~~~~fl~~~l~pP~~~~v~~al~~L~~lgald~~~~ 775 (1009)
.++|.||+||+++.|..|.++..|||++++|++++|+++.+|+.++.+| .|++||+..++..|++.|..+||||.+|+
T Consensus 324 ~~~G~cyrL~t~~~~~~l~~~~~PEI~r~~L~~~~L~l~~~g~~~~~~~--~~l~~P~~~~i~~a~~~L~~lgald~~~~ 401 (819)
T TIGR01970 324 LEPGVCYRLWSEEQHQRLPAQDEPEILQADLSGLALELAQWGAKDPSDL--RWLDAPPSVALAAARQLLQRLGALDAQGR 401 (819)
T ss_pred CCCCEEEEeCCHHHHHhhhcCCCcceeccCcHHHHHHHHHcCCCChhhC--CCCCCcCHHHHHHHHHHHHHCCCCCCCCC
Confidence 9999999999999999999999999999999999999999999999988 89999999999999999999999999999
Q ss_pred cChhhhhcccCCCChhHHHHHHHhhhhCCcchHHHHHHhhcCCCccccCcChHHHHHHHHhhhccCChhhHHHHHHHHHH
Q 001817 776 LTVLGRNLSMLPVEPKLGKMLILGAIFNCLDPVMTVVAGLSVRDPFLMPFDKKDLAESAKAQFSARDYSDHLALVRAYDG 855 (1009)
Q Consensus 776 lT~lG~~ls~lpl~p~~~k~ll~~~~~~c~~~~l~i~a~ls~~~~f~~p~~~~~~~~~~~~~f~~~~~sDhl~~l~~f~~ 855 (1009)
||++|+.|+.||++|++||||+.|+.++|.+++++|||+|+.++++-. ..+|....+.+++.
T Consensus 402 lT~~G~~~~~lp~~p~l~~~ll~~~~~~~~~~~~~iaa~ls~~~~~~~------------------~~~d~~~~~~~~~~ 463 (819)
T TIGR01970 402 LTAHGKAMAALGCHPRLAAMLLSAHSTGLAALACDLAALLEERGLPRQ------------------GGADLMNRLHRLQQ 463 (819)
T ss_pred cCHHHHHHHhcCCCHHHHHHHHHhhhcCCHHHHHHHHHHHcCCCCCCC------------------CcccHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999987421 12565444444432
Q ss_pred HHHHhhcccchhhHHHhcCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCcCCCCCCCCHHHHHHHHHhccCCCcccccccc
Q 001817 856 WKDAERHQSGYEYCWKNFLSAQTLKAIDSLRKQFLFLLKDAGLVDRNTENCNKWSHDEHLIRAVICAGLFPGLCSVVNKE 935 (1009)
Q Consensus 856 w~~~~~~~~~~~~c~~~~l~~~~l~~~~~~r~ql~~~l~~~~~~~~~~~~~~~~s~~~~~i~~~l~ag~~pnva~~~~~~ 935 (1009)
.. ...|. .+..+.+|+...+ +........ . .+.. +-.+++.||-..||+.. +
T Consensus 464 ~~--------~~~~~----------~~~~~~~~~~~~~---~~~~~~~~~--~--~~~~-~g~lla~a~pdria~~r--~ 515 (819)
T TIGR01970 464 GR--------QGRGQ----------RAQQLAKKLRRRL---RFSQADSGA--I--ASHA-LGLLLALAFPDRIAKRR--G 515 (819)
T ss_pred cc--------hhhHH----------HHHHHHHHHHHHh---CcCcCCCcc--c--ccch-HhHHHhhhChHhheecc--C
Confidence 10 01121 2233334443322 211000000 0 0111 45577888888899653 3
Q ss_pred ccceeEeecCCEEEEecCCCCCCCCCCCCCeEEEeeehhc---ccceeeeccccCHHHHHHhcCcc
Q 001817 936 KSIALKTMEDGQVLLYSNSVNAGVPKIPYPWLVFNEKIKV---NSVFLRDSTGVSDSVLLLFGGNI 998 (1009)
Q Consensus 936 ~~~~~~~~~~~~v~ihpsSv~~~~~~~~~~~vvy~e~~~t---~~~~ir~~t~v~~~~l~lfgg~~ 998 (1009)
+...|....+..+.++|.|.+++ .+|+|..|+..+ ....|+-.++|++.|+.-..+..
T Consensus 516 ~~~~y~l~~G~~~~l~~~~~l~~-----~~~l~~a~~~~~~~~~~~~i~~a~~i~~~~~~~~~~~~ 576 (819)
T TIGR01970 516 QPGRYQLANGRGAVLSAEDALAR-----EPWLVAADLGEGQGKTAARILLAAPVDEALLRQVLPDL 576 (819)
T ss_pred CCCeEECCCCCeeEeCCCCcccC-----CCeEEEEEeeccCCccccceeeeccCCHHHHHHHhHHH
Confidence 33358776677799999998875 379999999634 23568899999999997655443
No 11
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=100.00 E-value=1.5e-82 Score=781.67 Aligned_cols=560 Identities=29% Similarity=0.420 Sum_probs=469.0
Q ss_pred CCCCHHHHHHHHHHHHcCCeEEEEecCCCchhhhHHHHHHHHHHHHhcCCceEEEechhHHHHHHHHHHHHHHHhCCccc
Q 001817 296 SLPSYKERDALLKAISENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERGEKLG 375 (1009)
Q Consensus 296 ~LPi~~~q~~il~~l~~~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~IvvtqPrR~La~qva~rva~e~~~~~g 375 (1009)
.||++....+|++++.+++++|++|+|||||||++|+++++... ..++|+|++|||++|.|+++++++++++.+|
T Consensus 3 ~LPi~~~~~~i~~~l~~~~~vvv~A~TGSGKTt~~pl~lL~~~~-----~~~~ilvlqPrR~aA~qia~rva~~l~~~~g 77 (812)
T PRK11664 3 SLPVAAVLPELLTALKTAPQVLLKAPTGAGKSTWLPLQLLQHGG-----INGKIIMLEPRRLAARNVAQRLAEQLGEKPG 77 (812)
T ss_pred CCCHHHHHHHHHHHHHhCCCEEEEcCCCCCHHHHHHHHHHHcCC-----cCCeEEEECChHHHHHHHHHHHHHHhCcccC
Confidence 59999999999999999999999999999999999999997532 2358999999999999999999999999999
Q ss_pred ceeeeeeeeccccCCCcEEEEEccHHHHHHHhcCCCCCCccEEEEeCCCcCCCcchHHHHHHHHHcc-cCCCCcEEEecc
Q 001817 376 ESVGYKVRLEGMKGRDTRLMFCTTGILLRRLLVDRSLRGVTHVIVDEIHERGMNEDFLLIVLKELLP-RRPELRLILMSA 454 (1009)
Q Consensus 376 ~~vGy~vr~e~~~~~~t~Iiv~T~g~Ll~~L~~~~~l~~is~IIIDEaHeR~~~~d~ll~llk~ll~-~~~~lkvIlmSA 454 (1009)
..|||.++++...+.+++|+|+|+|+|++.+..++.++++++|||||+|||++++|+++++++.++. .++++|+|+|||
T Consensus 78 ~~VGy~vr~~~~~~~~t~I~v~T~G~Llr~l~~d~~L~~v~~IIlDEaHER~l~~Dl~L~ll~~i~~~lr~~lqlilmSA 157 (812)
T PRK11664 78 ETVGYRMRAESKVGPNTRLEVVTEGILTRMIQRDPELSGVGLVILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSA 157 (812)
T ss_pred ceEEEEecCccccCCCCcEEEEChhHHHHHHhhCCCcCcCcEEEEcCCCccccccchHHHHHHHHHHhCCccceEEEEec
Confidence 9999999999988888999999999999999999999999999999999999999999998877765 468899999999
Q ss_pred CCCHHHHHhhhCCCCeeccCCcccceeeEehhhHHHHhhhccCcccccccchhhhHHHHHHHHHHHHhhhhhHHHHHHHH
Q 001817 455 TLNAELFSSYFGGAPMLHIPGFTYPVRAYFLENILEMTRYRLNTYNQIDDYGQEKSWKMQKQALALRKRKSSIASAVEDA 534 (1009)
Q Consensus 455 Tl~~~~~~~yf~~~pvi~i~g~~~pv~~~yl~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 534 (1009)
|++.+.+++||++++++.++|+.|||+.+|.+... . ..+++.
T Consensus 158 Tl~~~~l~~~~~~~~~I~~~gr~~pV~~~y~~~~~----------------------------------~----~~~~~~ 199 (812)
T PRK11664 158 TLDNDRLQQLLPDAPVIVSEGRSFPVERRYQPLPA----------------------------------H----QRFDEA 199 (812)
T ss_pred CCCHHHHHHhcCCCCEEEecCccccceEEeccCch----------------------------------h----hhHHHH
Confidence 99999999999999999999999999998864200 0 000000
Q ss_pred HHHhhhcchhhhhhhccccCCCCCcchhhHHHHHHHHHhhcCCCcEEEEcCCHhHHHHHHHHHHcCCCCCCCCCeEEEEe
Q 001817 535 LEAADFREYSVQTQQSLSCWNPDSIGFNLIEHVLCHIVKKERPGAVLVFMTGWDDINSLKDQLQAHPLLGDPSRVLLLAC 614 (1009)
Q Consensus 535 l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~~~~i~~l~~~L~~~~~~~~~~~~~v~~l 614 (1009)
+...+..++.. ..|++|||+||+.+|+.+++.|.... ..++.+.++
T Consensus 200 -----------------------------v~~~l~~~l~~-~~g~iLVFlpg~~ei~~l~~~L~~~~----~~~~~v~~L 245 (812)
T PRK11664 200 -----------------------------VARATAELLRQ-ESGSLLLFLPGVGEIQRVQEQLASRV----ASDVLLCPL 245 (812)
T ss_pred -----------------------------HHHHHHHHHHh-CCCCEEEEcCCHHHHHHHHHHHHHhc----cCCceEEEe
Confidence 00112233332 36899999999999999999998631 125779999
Q ss_pred cCCCCHHHHHhhcCCCCCCceEEEEecCccccccCCCCeeEEEeCCCCccccccCCCCCCcccccccCHHhHHhhhcccC
Q 001817 615 HGSMASSEQRLIFDKPEDGVRKIVLATNMAETSITINDVVFVIDCGKAKETSYDALNNTPCLLPSWISKAAARQRRGRAG 694 (1009)
Q Consensus 615 Hs~l~~~er~~v~~~f~~G~~kVLVATniae~GIdIp~V~~VId~g~~k~~~yd~~~~~~~l~~~~iS~as~~QR~GRAG 694 (1009)
||+|+.++|+++++.|++|+++|||||||||+|||||+|++|||+|+++...||+.++++.+.+.|||+++|.||+||||
T Consensus 246 hg~l~~~eq~~~~~~~~~G~rkVlvATnIAErsLtIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRaG 325 (812)
T PRK11664 246 YGALSLAEQQKAILPAPAGRRKVVLATNIAETSLTIEGIRLVVDSGLERVARFDPKTGLTRLVTQRISQASMTQRAGRAG 325 (812)
T ss_pred eCCCCHHHHHHHhccccCCCeEEEEecchHHhcccccCceEEEECCCcccccccccCCcceeEEEeechhhhhhhccccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcEEEecchhhhhhhccCCCccccccCchhhhhHhhhcCcCCHHHHHHhhcCCCChhhHHHHHHHHHHhccccCCC
Q 001817 695 RVQPGECYHLYPRYVYDAFADYQLPELLRTPLQSLCLQIKSLQLGSISEFLSRALQPPEPLSVKNAIEYLQIIGALDENE 774 (1009)
Q Consensus 695 R~~~G~c~~Lys~~~~~~l~~~~~PEi~r~~L~~~~L~lk~l~~~~~~~fl~~~l~pP~~~~v~~al~~L~~lgald~~~ 774 (1009)
|.++|.||+||+++.|+.|.++..|||++++|++++|.++++|..++.+| .|++||+..++..|++.|..+||||++|
T Consensus 326 R~~~G~cyrL~t~~~~~~l~~~~~PEI~r~dL~~~~L~l~~~g~~~~~~~--~~ld~P~~~~~~~A~~~L~~lgald~~g 403 (812)
T PRK11664 326 RLEPGICLHLYSKEQAERAAAQSEPEILHSDLSGLLLELLQWGCHDPAQL--SWLDQPPAAALAAAKRLLQQLGALDGQG 403 (812)
T ss_pred CCCCcEEEEecCHHHHhhCccCCCCceeccchHHHHHHHHHcCCCCHHhC--CCCCCCCHHHHHHHHHHHHHCCCCCCCC
Confidence 99999999999999999999999999999999999999999999999998 8999999999999999999999999999
Q ss_pred CcChhhhhcccCCCChhHHHHHHHhhhhCCcc--hHHHHHHhhcCCCccccCcChHHHHHHHHhhhccCChhhHHHHHHH
Q 001817 775 NLTVLGRNLSMLPVEPKLGKMLILGAIFNCLD--PVMTVVAGLSVRDPFLMPFDKKDLAESAKAQFSARDYSDHLALVRA 852 (1009)
Q Consensus 775 ~lT~lG~~ls~lpl~p~~~k~ll~~~~~~c~~--~~l~i~a~ls~~~~f~~p~~~~~~~~~~~~~f~~~~~sDhl~~l~~ 852 (1009)
+||++|+.|+.||++|++||||+.|+.++|.. .+..+||+|+.+++ .. ..+.+|++..+.
T Consensus 404 ~lT~~G~~m~~lp~~Prla~~ll~a~~~~~~~l~~a~~laall~e~~~-----~~------------~~d~~~~l~~~~- 465 (812)
T PRK11664 404 RLTARGRKMAALGNDPRLAAMLVAAKEDDEAALATAAKLAAILEEPPR-----SG------------SSDLGVALSRKQ- 465 (812)
T ss_pred CcCHHHHHHHhcCCchHHHHHHHHHHhcCchhhHHHHHHHHhhccCCC-----CC------------cccHHHHHHHHH-
Confidence 99999999999999999999999999998653 56666777665421 00 012234443111
Q ss_pred HHHHHHHhhcccchhhHHHhcCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCcCCCCCCCCHHHHHHHHHhccCCCccccc
Q 001817 853 YDGWKDAERHQSGYEYCWKNFLSAQTLKAIDSLRKQFLFLLKDAGLVDRNTENCNKWSHDEHLIRAVICAGLFPGLCSVV 932 (1009)
Q Consensus 853 f~~w~~~~~~~~~~~~c~~~~l~~~~l~~~~~~r~ql~~~l~~~~~~~~~~~~~~~~s~~~~~i~~~l~ag~~pnva~~~ 932 (1009)
..|+ +.+..+.+|+... .+ . .+.+.+..+||+||..+||+..
T Consensus 466 -------------~~~~----------~~~~~~~~~~~~~---~~--~----------~~~~~~~~~la~aypdriA~~r 507 (812)
T PRK11664 466 -------------PHWQ----------QRAQQLLKRLNVR---GG--E----------ADSSLIAPLLALAFPDRIARRR 507 (812)
T ss_pred -------------HHHH----------HHHHHHHHHHHhh---cc--c----------CChHHHHHHHHHHCHHHHhhhc
Confidence 1232 2233334443221 11 0 1234478899999999999754
Q ss_pred cccccceeEeecCCEEEEecCCCCCCCCCCCCCeEEEeeehhcc-c--ceeeeccccCHHHHHHhcCc
Q 001817 933 NKEKSIALKTMEDGQVLLYSNSVNAGVPKIPYPWLVFNEKIKVN-S--VFLRDSTGVSDSVLLLFGGN 997 (1009)
Q Consensus 933 ~~~~~~~~~~~~~~~v~ihpsSv~~~~~~~~~~~vvy~e~~~t~-~--~~ir~~t~v~~~~l~lfgg~ 997 (1009)
+....|....+..+.+||+|.+++ .+|+|+.|++.++ + ..|+.+++|++.||.-..+.
T Consensus 508 --~~~~~~~l~~G~~a~l~~~~~l~~-----~~~lv~a~~~~~~~~~~~ri~~a~~l~~~~l~~~~~~ 568 (812)
T PRK11664 508 --GQDGRYQLANGMGAMLDADDALSR-----HEWLIAPLLLQGSASPDARILLALPLDIDELVQRCPQ 568 (812)
T ss_pred --CCCCeEEeeCCCeEEECCCCcccC-----CCeEEEEEhhccCccccceeeEeeccCHHHHHHHHHH
Confidence 222346655566699999999875 3899999997663 3 45889999999999765544
No 12
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=100.00 E-value=7.1e-79 Score=698.45 Aligned_cols=703 Identities=38% Similarity=0.647 Sum_probs=596.9
Q ss_pred hcChhhHHHHHhhcCCCCHHHHHHHHHHHHcCCeEEEEecCCCchhhhHHHHHHHHHHHHhcCCceEEEechhHHHHHHH
Q 001817 282 QESPEGQKMLEFRRSLPSYKERDALLKAISENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMA 361 (1009)
Q Consensus 282 ~~~~~~~~l~~~r~~LPi~~~q~~il~~l~~~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~IvvtqPrR~La~q 361 (1009)
+..+++..++++|..||+..++++|+.++..|++++|-++|||||||++.++||+..+.++.+....++++||||+.|+.
T Consensus 362 ~~d~e~~~~~a~re~lpva~~~~~i~q~v~dn~v~~I~getgcgk~tq~aq~iLe~~~~ns~g~~~na~v~qprrisais 441 (1282)
T KOG0921|consen 362 KRDEALDKITAQREELPVAQYRSEILQAVAENRVVIIKGETGCGKSTQVAQFLLESFLENSNGASFNAVVSQPRRISAIS 441 (1282)
T ss_pred hcccchhhhhhhhhhCcHHHHHHHHHHHHhcCceeeEeecccccchhHHHHHHHHHHhhccccccccceeccccccchHH
Confidence 45678888999999999999999999999999999999999999999999999999999888888899999999999999
Q ss_pred HHHHHHHHhCCcccceeeeeeeeccccCC-CcEEEEEccHHHHHHHhcCCCCCCccEEEEeCCCcCCCcchHHHHHHHHH
Q 001817 362 VSERVAAERGEKLGESVGYKVRLEGMKGR-DTRLMFCTTGILLRRLLVDRSLRGVTHVIVDEIHERGMNEDFLLIVLKEL 440 (1009)
Q Consensus 362 va~rva~e~~~~~g~~vGy~vr~e~~~~~-~t~Iiv~T~g~Ll~~L~~~~~l~~is~IIIDEaHeR~~~~d~ll~llk~l 440 (1009)
++++|++++++.+|.+|||++|+++..+. ...|.+||-|.+++.+.+. +..++|+|+||+|+|..++||++.+++.+
T Consensus 442 iaerva~er~e~~g~tvgy~vRf~Sa~prpyg~i~fctvgvllr~~e~g--lrg~sh~i~deiherdv~~dfll~~lr~m 519 (1282)
T KOG0921|consen 442 LAERVANERGEEVGETCGYNVRFDSATPRPYGSIMFCTVGVLLRMMENG--LRGISHVIIDEIHERDVDTDFVLIVLREM 519 (1282)
T ss_pred HHHHHHHhhHHhhcccccccccccccccccccceeeeccchhhhhhhhc--ccccccccchhhhhhccchHHHHHHHHhh
Confidence 99999999999999999999999998764 4679999999999988754 77899999999999999999999999999
Q ss_pred cccCCCCcEEEeccCCCHHHHHhhhCCCCeeccCCcccceeeEehhhHHHHhhhccCcccccccchhhhHHHHHHHHHHH
Q 001817 441 LPRRPELRLILMSATLNAELFSSYFGGAPMLHIPGFTYPVRAYFLENILEMTRYRLNTYNQIDDYGQEKSWKMQKQALAL 520 (1009)
Q Consensus 441 l~~~~~lkvIlmSATl~~~~~~~yf~~~pvi~i~g~~~pv~~~yl~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 520 (1009)
....+++++++||||+|.+.|..||+.+|...+.|++||+..+|++++..++.+..........+..+.... .. .
T Consensus 520 ~~ty~dl~v~lmsatIdTd~f~~~f~~~p~~~~~grt~pvq~F~led~~~~~~~vp~~~~~~k~k~~~~~~~----~~-~ 594 (1282)
T KOG0921|consen 520 ISTYRDLRVVLMSATIDTDLFTNFFSSIPDVTVHGRTFPVQSFFLEDIIQMTQFVPSEPSQKKRKKDDDEED----EE-V 594 (1282)
T ss_pred hccchhhhhhhhhcccchhhhhhhhccccceeeccccccHHHHHHHHhhhhhhccCCCcCccchhhcccccC----ch-h
Confidence 999999999999999999999999999999999999999999999999888776554433222111000000 00 0
Q ss_pred HhhhhhHHHHHHHHHHHhhhcchhhhhhhccccCCCCCcchhhHHHHHHHHHhhcCCCcEEEEcCCHhHHHHHHHHHHcC
Q 001817 521 RKRKSSIASAVEDALEAADFREYSVQTQQSLSCWNPDSIGFNLIEHVLCHIVKKERPGAVLVFMTGWDDINSLKDQLQAH 600 (1009)
Q Consensus 521 ~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~~~~i~~l~~~L~~~ 600 (1009)
.++.+.. ....-..+...+...........+.+.+++.++.++....-.|.|+||+|+|..+..|...|..+
T Consensus 595 ddK~~n~--------n~~~dd~~~~~~~~am~~~se~d~~f~l~Eal~~~i~s~~i~gailvflpgwa~i~~L~~~ll~~ 666 (1282)
T KOG0921|consen 595 DDKGRNM--------NILCDPSYNESTRTAMSRLSEKDIPFGLIEALLNDIASRNIDGAVLVFLPGWAEIMTLCNRLLEH 666 (1282)
T ss_pred hhccccc--------ccccChhhcchhhhhhhcchhhcchhHHHHHHHhhhcccCCccceeeecCchHHhhhhhhhhhhh
Confidence 0000000 00000111112222223334455677888899999988888899999999999999999999998
Q ss_pred CCCCCCCCeEEEEecCCCCHHHHHhhcCCCCCCceEEEEecCccccccCCCCeeEEEeCCCCccccccCCCCCCcccccc
Q 001817 601 PLLGDPSRVLLLACHGSMASSEQRLIFDKPEDGVRKIVLATNMAETSITINDVVFVIDCGKAKETSYDALNNTPCLLPSW 680 (1009)
Q Consensus 601 ~~~~~~~~~~v~~lHs~l~~~er~~v~~~f~~G~~kVLVATniae~GIdIp~V~~VId~g~~k~~~yd~~~~~~~l~~~~ 680 (1009)
..+++...+.++++|+.++..+|.+|++..+.|..|+|++|++++++|+|.++++|||.+..+.+.|-..+++..+.+.|
T Consensus 667 ~~fg~~~~y~ilp~Hsq~~~~eqrkvf~~~p~gv~kii~stniaetsiTidd~v~vid~cka~~~~~~s~nn~~~~Atvw 746 (1282)
T KOG0921|consen 667 QEFGQANKYEILPLHSQLTSQEQRKVFEPVPEGVTKIILSTNIAETSITIDDVVYVIDSCKAKEKLFTSHNNMTHYATVW 746 (1282)
T ss_pred hhhccchhcccccchhhcccHhhhhccCcccccccccccccceeeEeeeecceeEEEeeeeeeeeeeccccceeeeeeec
Confidence 88898889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCHHhHHhhhcccCCCCCCcEEEecchhhhhhhccCCCccccccCchhhhhHhhhcCcCCHHHHHHhhcCCCChhhHHHH
Q 001817 681 ISKAAARQRRGRAGRVQPGECYHLYPRYVYDAFADYQLPELLRTPLQSLCLQIKSLQLGSISEFLSRALQPPEPLSVKNA 760 (1009)
Q Consensus 681 iS~as~~QR~GRAGR~~~G~c~~Lys~~~~~~l~~~~~PEi~r~~L~~~~L~lk~l~~~~~~~fl~~~l~pP~~~~v~~a 760 (1009)
.|+-+..||.||+||.++|.||++.++..|+.+.++..||+.|+++.++.|.+|.+.+.++..|+.+.++||+.+++..+
T Consensus 747 ~sktn~eqr~gr~grvR~G~~f~lcs~arF~~l~~~~t~em~r~plhemalTikll~l~SI~~fl~kal~~~p~dav~e~ 826 (1282)
T KOG0921|consen 747 ASKTNLEQRKGRAGRVRPGFCFHLCSRARFEALEDHGTAEMFRTPLHEIALTIKLLRLGSIGEFLGKALQPPPYDAVIEA 826 (1282)
T ss_pred ccccchHhhcccCceecccccccccHHHHHHHHHhcCcHhhhcCccHHHHhhHHHHHhhhHHHHHhhccCCCchhhccCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhccccCCCCcChhhhhcccCCCChhHHHHHHHhhhhCCcchHHHHHHhhcCCCccccCcChHHHHHHHHhhhcc
Q 001817 761 IEYLQIIGALDENENLTVLGRNLSMLPVEPKLGKMLILGAIFNCLDPVMTVVAGLSVRDPFLMPFDKKDLAESAKAQFSA 840 (1009)
Q Consensus 761 l~~L~~lgald~~~~lT~lG~~ls~lpl~p~~~k~ll~~~~~~c~~~~l~i~a~ls~~~~f~~p~~~~~~~~~~~~~f~~ 840 (1009)
-..|+.++++|.++.+|++|+.++.+|+.|.++||++.+..++|.+-+..+|+.+++..+|..-.-........++.|++
T Consensus 827 e~~l~~m~~ld~n~elt~lg~~la~l~iep~~~k~~~lg~~~g~~~~m~~~as~~s~~~~~~~~~~~~~rl~g~q~~~~g 906 (1282)
T KOG0921|consen 827 EAVLREMGALDANDELTPLGRMLARLPIEPRIGKMMILGTALGAGSVMCDVASAMSFPTPFVPREKHHSRLSGTQRKFAG 906 (1282)
T ss_pred hHHHHHhhhhhccCcccchhhhhhhccCcccccceeeechhhccchhhhhhhcccccccccccccccccccccchhhccc
Confidence 99999999999999999999999999999999999999999999999999999999998887533222333445566777
Q ss_pred CChhhHHHHHHHHHHHHHHhhcc--cchhhHHHhcCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCc----CCCCCCCCHH
Q 001817 841 RDYSDHLALVRAYDGWKDAERHQ--SGYEYCWKNFLSAQTLKAIDSLRKQFLFLLKDAGLVDRNTE----NCNKWSHDEH 914 (1009)
Q Consensus 841 ~~~sDhl~~l~~f~~w~~~~~~~--~~~~~c~~~~l~~~~l~~~~~~r~ql~~~l~~~~~~~~~~~----~~~~~s~~~~ 914 (1009)
+.+|||.+...+-+.|+.....+ .+.+||.+..++..+|.....+|.|+.++|+.++++..... ..|....+..
T Consensus 907 ~kfsdhva~~~v~q~~r~~~q~ga~~e~efc~r~~l~~~~~~~t~~a~~ql~d~L~q~~fpe~~~~~~~v~~ng~d~~l~ 986 (1282)
T KOG0921|consen 907 NKFSDHVAIVSVIQGYREAVQMGAAAEREFCERYSLSNPVLKMTDGARRQLIDVLRQCSFPEDILFDISVNVNGPDRELN 986 (1282)
T ss_pred cccccchhhhhhhhhhHHHhhhhhhhhhhHhHhhhhcchhhhhhhhhHHHHHHHHHhccCccccccceeeccCCCCchhH
Confidence 77777777777766666554322 35799999999999999999999999999998887643211 1233334557
Q ss_pred HHHHHHHhccCCCccccccccccceeEeecCCEEEEecCCCCC--C--CCCCCCCeEEEeeehhcccceeeeccccCHHH
Q 001817 915 LIRAVICAGLFPGLCSVVNKEKSIALKTMEDGQVLLYSNSVNA--G--VPKIPYPWLVFNEKIKVNSVFLRDSTGVSDSV 990 (1009)
Q Consensus 915 ~i~~~l~ag~~pnva~~~~~~~~~~~~~~~~~~v~ihpsSv~~--~--~~~~~~~~vvy~e~~~t~~~~ir~~t~v~~~~ 990 (1009)
+++..||+++|||+|... ++. ...|.+.+...||-.|||. + .-++|+||+||.|+++|..+-.+..|.|+|+.
T Consensus 987 ~~~~lL~~~lypn~~~y~--ekr-kvLtTe~~~alihk~Svncp~S~qdM~fPsPFFVFGEKIRTRAIS~K~MslVsPLQ 1063 (1282)
T KOG0921|consen 987 LMRSLLVMALYPNVAYYV--EKR-KVLTTEQSSALIHKYSVNCPNSRQEMDFPSPFFVFGEKIRTRAISCKQMSLVSPLQ 1063 (1282)
T ss_pred HHHHHHHhhcCCccceec--cce-eEEeecchhhhhhhhcccCCCcccccCCCCceeeechhhhhheecccCccccChHH
Confidence 789999999999999664 322 2345566777788888775 2 23578999999999999999999999999999
Q ss_pred HHHhcCccccCC
Q 001817 991 LLLFGGNISRGG 1002 (1009)
Q Consensus 991 l~lfgg~~~~~~ 1002 (1009)
|+|||.+=...+
T Consensus 1064 LLLF~SrKVqsd 1075 (1282)
T KOG0921|consen 1064 LLLFGSRKVQSD 1075 (1282)
T ss_pred Hhhhhhhhcccc
Confidence 999998754433
No 13
>PHA02653 RNA helicase NPH-II; Provisional
Probab=100.00 E-value=4.7e-55 Score=525.36 Aligned_cols=405 Identities=23% Similarity=0.351 Sum_probs=311.0
Q ss_pred CCCCHHHHHHHHHHHHcCCeEEEEecCCCchhhhHHHHHHHH-----HHHH-----hcCCceEEEechhHHHHHHHHHHH
Q 001817 296 SLPSYKERDALLKAISENQVVVVSGETGCGKTTQLPQYILES-----ETEA-----ARGAACSIICTQPRRISAMAVSER 365 (1009)
Q Consensus 296 ~LPi~~~q~~il~~l~~~~~vII~apTGSGKTt~~~~~ile~-----~~~~-----~~~~~~~IvvtqPrR~La~qva~r 365 (1009)
+++... |+++++.+.+++++|++|+||||||+|+||++++. .+.. ..+..+.|+|++|||+||.|++.+
T Consensus 163 ~~~~~i-Q~qil~~i~~gkdvIv~A~TGSGKTtqvPq~l~~~~flf~~l~~l~~~~~~~~~~~ilvt~PrreLa~qi~~~ 241 (675)
T PHA02653 163 SLQPDV-QLKIFEAWISRKPVVLTGGTGVGKTSQVPKLLLWFNYLFGGFDNLDKIDPNFIERPIVLSLPRVALVRLHSIT 241 (675)
T ss_pred chhHHH-HHHHHHHHHhCCCEEEECCCCCCchhHHHHHHHHhhhccchhhhhhhcccccCCcEEEEECcHHHHHHHHHHH
Confidence 344444 46888889999999999999999999999999874 1221 123456899999999999999999
Q ss_pred HHHHhCCcccceeeeeeeeccccC-------CCcEEEEEccHHHHHHHhcCCCCCCccEEEEeCCCcCCCcchHHHHHHH
Q 001817 366 VAAERGEKLGESVGYKVRLEGMKG-------RDTRLMFCTTGILLRRLLVDRSLRGVTHVIVDEIHERGMNEDFLLIVLK 438 (1009)
Q Consensus 366 va~e~~~~~g~~vGy~vr~e~~~~-------~~t~Iiv~T~g~Ll~~L~~~~~l~~is~IIIDEaHeR~~~~d~ll~llk 438 (1009)
+.+..|......+.+.++++.... ...+|+++|++.. .+.++++++|||||||||...+|+++.+++
T Consensus 242 i~~~vg~~~~~g~~v~v~~Gg~~~~~~~t~~k~~~Ilv~T~~L~------l~~L~~v~~VVIDEaHEr~~~~DllL~llk 315 (675)
T PHA02653 242 LLKSLGFDEIDGSPISLKYGSIPDELINTNPKPYGLVFSTHKLT------LNKLFDYGTVIIDEVHEHDQIGDIIIAVAR 315 (675)
T ss_pred HHHHhCccccCCceEEEEECCcchHHhhcccCCCCEEEEeCccc------ccccccCCEEEccccccCccchhHHHHHHH
Confidence 988776532222233444443321 2457999998742 246889999999999999999999999998
Q ss_pred HHcccCCCCcEEEeccCCC--HHHHHhhhCCCCeeccCCcc-cceeeEehhhHHHHhhhccCcccccccchhhhHHHHHH
Q 001817 439 ELLPRRPELRLILMSATLN--AELFSSYFGGAPMLHIPGFT-YPVRAYFLENILEMTRYRLNTYNQIDDYGQEKSWKMQK 515 (1009)
Q Consensus 439 ~ll~~~~~lkvIlmSATl~--~~~~~~yf~~~pvi~i~g~~-~pv~~~yl~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~ 515 (1009)
.+.... .|+++||||++ .+.|.+||++++.+.++|+. +|++.+|+++.... .. ..++
T Consensus 316 ~~~~~~--rq~ILmSATl~~dv~~l~~~~~~p~~I~I~grt~~pV~~~yi~~~~~~-------~~-~~~y---------- 375 (675)
T PHA02653 316 KHIDKI--RSLFLMTATLEDDRDRIKEFFPNPAFVHIPGGTLFPISEVYVKNKYNP-------KN-KRAY---------- 375 (675)
T ss_pred Hhhhhc--CEEEEEccCCcHhHHHHHHHhcCCcEEEeCCCcCCCeEEEEeecCccc-------cc-chhh----------
Confidence 765432 37999999994 56889999999999999986 99999997642100 00 0000
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHhhhcchhhhhhhccccCCCCCcchhhHHHHHHHHHh--hcCCCcEEEEcCCHhHHHHH
Q 001817 516 QALALRKRKSSIASAVEDALEAADFREYSVQTQQSLSCWNPDSIGFNLIEHVLCHIVK--KERPGAVLVFMTGWDDINSL 593 (1009)
Q Consensus 516 ~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~--~~~~g~iLVFl~~~~~i~~l 593 (1009)
++.. ...++..+.. ....+++|||+||+++++.+
T Consensus 376 ---------------~~~~-----------------------------k~~~l~~L~~~~~~~~g~iLVFlpg~~ei~~l 411 (675)
T PHA02653 376 ---------------IEEE-----------------------------KKNIVTALKKYTPPKGSSGIVFVASVSQCEEY 411 (675)
T ss_pred ---------------hHHH-----------------------------HHHHHHHHHHhhcccCCcEEEEECcHHHHHHH
Confidence 0000 0001111111 12357999999999999999
Q ss_pred HHHHHcCCCCCCCCCeEEEEecCCCCHHHHHhhcCCC-CCCceEEEEecCccccccCCCCeeEEEeCCCCccccccCCCC
Q 001817 594 KDQLQAHPLLGDPSRVLLLACHGSMASSEQRLIFDKP-EDGVRKIVLATNMAETSITINDVVFVIDCGKAKETSYDALNN 672 (1009)
Q Consensus 594 ~~~L~~~~~~~~~~~~~v~~lHs~l~~~er~~v~~~f-~~G~~kVLVATniae~GIdIp~V~~VId~g~~k~~~yd~~~~ 672 (1009)
++.|.... +++.+.++||+|++.++ +++.| ++|+++||||||+||+|||||+|++|||+|+++.+. +..+
T Consensus 412 ~~~L~~~~-----~~~~v~~LHG~Lsq~eq--~l~~ff~~gk~kILVATdIAERGIDIp~V~~VID~G~~k~p~--~~~g 482 (675)
T PHA02653 412 KKYLEKRL-----PIYDFYIIHGKVPNIDE--ILEKVYSSKNPSIIISTPYLESSVTIRNATHVYDTGRVYVPE--PFGG 482 (675)
T ss_pred HHHHHhhc-----CCceEEeccCCcCHHHH--HHHHHhccCceeEEeccChhhccccccCeeEEEECCCccCCC--cccC
Confidence 99998651 25779999999998643 33444 689999999999999999999999999999877542 2222
Q ss_pred CCcccccccCHHhHHhhhcccCCCCCCcEEEecchhhhhhhccCCCccccccC---chhhhhHhhhcCcCCHHHHHHhhc
Q 001817 673 TPCLLPSWISKAAARQRRGRAGRVQPGECYHLYPRYVYDAFADYQLPELLRTP---LQSLCLQIKSLQLGSISEFLSRAL 749 (1009)
Q Consensus 673 ~~~l~~~~iS~as~~QR~GRAGR~~~G~c~~Lys~~~~~~l~~~~~PEi~r~~---L~~~~L~lk~l~~~~~~~fl~~~l 749 (1009)
...|+|+++|.||+|||||.++|.||+||+++.. .| |.+.+ |.+++|+++++|++.+..+ |+
T Consensus 483 ----~~~~iSkasa~QRaGRAGR~~~G~c~rLyt~~~~-------~p-I~ri~~~~L~~~vL~lk~~g~~~~~~~---~l 547 (675)
T PHA02653 483 ----KEMFISKSMRTQRKGRVGRVSPGTYVYFYDLDLL-------KP-IKRIDSEFLHNYILYAKYFNLTLPEDL---FV 547 (675)
T ss_pred ----cccccCHHHHHHhccCcCCCCCCeEEEEECHHHh-------HH-HHHHhHHHHHHHHHHHHHcCCCCcccc---cC
Confidence 2469999999999999999999999999999864 24 56665 8899999999999655443 89
Q ss_pred CCCChhhHHHHHHHHHHhccccCCCCcChh--hhhcccCCCChhHHHHHHHhhh
Q 001817 750 QPPEPLSVKNAIEYLQIIGALDENENLTVL--GRNLSMLPVEPKLGKMLILGAI 801 (1009)
Q Consensus 750 ~pP~~~~v~~al~~L~~lgald~~~~lT~l--G~~ls~lpl~p~~~k~ll~~~~ 801 (1009)
+||+.+++..|++.|..+||+|+ +||.+ |+.++.+ +.||++++|+.
T Consensus 548 dpP~~~~l~~A~~~L~~lga~~~--~l~~l~~~~~~~~~----~~~k~~~~g~~ 595 (675)
T PHA02653 548 IPSNLDRLRKTEEYIDSFNISIE--KWYEILSNYYVNML----EYAKIYVKGGI 595 (675)
T ss_pred CCCCHHHHHHHHHHHHHcCCCch--hhhhhhccccHHHH----HHhHHHhcccH
Confidence 99999999999999999998866 79999 9999999 99999998854
No 14
>PRK01172 ski2-like helicase; Provisional
Probab=100.00 E-value=1.7e-40 Score=409.89 Aligned_cols=423 Identities=21% Similarity=0.229 Sum_probs=288.2
Q ss_pred CCCHHHHHHHHHHHHcCCeEEEEecCCCchhhhHHHHHHHHHHHHhcCCceEEEechhHHHHHHHHHHHHHHHhCCcccc
Q 001817 297 LPSYKERDALLKAISENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERGEKLGE 376 (1009)
Q Consensus 297 LPi~~~q~~il~~l~~~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~IvvtqPrR~La~qva~rva~e~~~~~g~ 376 (1009)
...+..|.++++.+.++++++++||||||||+++.+++++.+.. +.++++++|+++||.|+++.+.+.. ..|.
T Consensus 21 ~~l~~~Q~~ai~~l~~~~nvlv~apTGSGKTl~a~lail~~l~~-----~~k~v~i~P~raLa~q~~~~~~~l~--~~g~ 93 (674)
T PRK01172 21 FELYDHQRMAIEQLRKGENVIVSVPTAAGKTLIAYSAIYETFLA-----GLKSIYIVPLRSLAMEKYEELSRLR--SLGM 93 (674)
T ss_pred CCCCHHHHHHHHHHhcCCcEEEECCCCchHHHHHHHHHHHHHHh-----CCcEEEEechHHHHHHHHHHHHHHh--hcCC
Confidence 34577788888889999999999999999999999999887643 2356777799999999999987532 2344
Q ss_pred eeeeeeeecc---ccCCCcEEEEEccHHHHHHHhcCC-CCCCccEEEEeCCCcCCC--cchHHHHHHHHHcccCCCCcEE
Q 001817 377 SVGYKVRLEG---MKGRDTRLMFCTTGILLRRLLVDR-SLRGVTHVIVDEIHERGM--NEDFLLIVLKELLPRRPELRLI 450 (1009)
Q Consensus 377 ~vGy~vr~e~---~~~~~t~Iiv~T~g~Ll~~L~~~~-~l~~is~IIIDEaHeR~~--~~d~ll~llk~ll~~~~~lkvI 450 (1009)
.++..+.... ......+|+|+||+.+...+..++ .+.++++|||||+|..+- ....+..++..+...+++.|+|
T Consensus 94 ~v~~~~G~~~~~~~~~~~~dIiv~Tpek~~~l~~~~~~~l~~v~lvViDEaH~l~d~~rg~~le~ll~~~~~~~~~~riI 173 (674)
T PRK01172 94 RVKISIGDYDDPPDFIKRYDVVILTSEKADSLIHHDPYIINDVGLIVADEIHIIGDEDRGPTLETVLSSARYVNPDARIL 173 (674)
T ss_pred eEEEEeCCCCCChhhhccCCEEEECHHHHHHHHhCChhHHhhcCEEEEecchhccCCCccHHHHHHHHHHHhcCcCCcEE
Confidence 4443322111 111457999999999887777665 689999999999997431 1223444444444456789999
Q ss_pred EeccCC-CHHHHHhhhCCCCeeccCCcccceeeEehhhHHHHhhhccCcccccccchhhhHHHHHHHHHHHHhhhhhHHH
Q 001817 451 LMSATL-NAELFSSYFGGAPMLHIPGFTYPVRAYFLENILEMTRYRLNTYNQIDDYGQEKSWKMQKQALALRKRKSSIAS 529 (1009)
Q Consensus 451 lmSATl-~~~~~~~yf~~~pvi~i~g~~~pv~~~yl~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 529 (1009)
+||||+ |.+.+++|++. +.+....+..|++......- . ...+...
T Consensus 174 ~lSATl~n~~~la~wl~~-~~~~~~~r~vpl~~~i~~~~----~------~~~~~~~----------------------- 219 (674)
T PRK01172 174 ALSATVSNANELAQWLNA-SLIKSNFRPVPLKLGILYRK----R------LILDGYE----------------------- 219 (674)
T ss_pred EEeCccCCHHHHHHHhCC-CccCCCCCCCCeEEEEEecC----e------eeecccc-----------------------
Confidence 999999 89999999974 44555666666654321100 0 0000000
Q ss_pred HHHHHHHHhhhcchhhhhhhccccCCCCCcchhhHHHHHHHHHhhcCCCcEEEEcCCHhHHHHHHHHHHcCCCCC-C---
Q 001817 530 AVEDALEAADFREYSVQTQQSLSCWNPDSIGFNLIEHVLCHIVKKERPGAVLVFMTGWDDINSLKDQLQAHPLLG-D--- 605 (1009)
Q Consensus 530 ~v~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~~~~i~~l~~~L~~~~~~~-~--- 605 (1009)
... ..+..++.... ..++++||||+++++++.++..|....... .
T Consensus 220 ----------------------------~~~-~~~~~~i~~~~--~~~~~vLVF~~sr~~~~~~a~~L~~~~~~~~~~~~ 268 (674)
T PRK01172 220 ----------------------------RSQ-VDINSLIKETV--NDGGQVLVFVSSRKNAEDYAEMLIQHFPEFNDFKV 268 (674)
T ss_pred ----------------------------ccc-ccHHHHHHHHH--hCCCcEEEEeccHHHHHHHHHHHHHhhhhcccccc
Confidence 000 00111222222 246799999999999999999887531100 0
Q ss_pred --------------CCCeEEEEecCCCCHHHHHhhcCCCCCCceEEEEecCccccccCCCCeeEEEeCCCCccccccCCC
Q 001817 606 --------------PSRVLLLACHGSMASSEQRLIFDKPEDGVRKIVLATNMAETSITINDVVFVIDCGKAKETSYDALN 671 (1009)
Q Consensus 606 --------------~~~~~v~~lHs~l~~~er~~v~~~f~~G~~kVLVATniae~GIdIp~V~~VId~g~~k~~~yd~~~ 671 (1009)
.....+.+|||+|+.++|+.+++.|++|.++|||||+++++|||+|+..+||+ |.++ |+.
T Consensus 269 ~~~~~~~~~~~L~~~l~~gv~~~hagl~~~eR~~ve~~f~~g~i~VLvaT~~la~Gvnipa~~VII~-~~~~---~~~-- 342 (674)
T PRK01172 269 SSENNNVYDDSLNEMLPHGVAFHHAGLSNEQRRFIEEMFRNRYIKVIVATPTLAAGVNLPARLVIVR-DITR---YGN-- 342 (674)
T ss_pred cccccccccHHHHHHHhcCEEEecCCCCHHHHHHHHHHHHcCCCeEEEecchhhccCCCcceEEEEc-CceE---eCC--
Confidence 00135889999999999999999999999999999999999999999877775 3333 332
Q ss_pred CCCcccccccCHHhHHhhhcccCCCC---CCcEEEec-chhhhh---hhccCCCccccccCchh------hhhHhhhcC-
Q 001817 672 NTPCLLPSWISKAAARQRRGRAGRVQ---PGECYHLY-PRYVYD---AFADYQLPELLRTPLQS------LCLQIKSLQ- 737 (1009)
Q Consensus 672 ~~~~l~~~~iS~as~~QR~GRAGR~~---~G~c~~Ly-s~~~~~---~l~~~~~PEi~r~~L~~------~~L~lk~l~- 737 (1009)
....++|.++|.||+|||||.+ .|.++.+. +.+.++ .+.. ..|+-..+.|.. -+|...+.+
T Consensus 343 ----~~~~~~s~~~~~Qm~GRAGR~g~d~~g~~~i~~~~~~~~~~~~~~l~-~~~~pi~S~l~~~~~~~~~~l~~i~~g~ 417 (674)
T PRK01172 343 ----GGIRYLSNMEIKQMIGRAGRPGYDQYGIGYIYAASPASYDAAKKYLS-GEPEPVISYMGSQRKVRFNTLAAISMGL 417 (674)
T ss_pred ----CCceeCCHHHHHHHhhcCCCCCCCCcceEEEEecCcccHHHHHHHHc-CCCCceeecCCCcccHHHHHHHHHHhcc
Confidence 1225689999999999999996 57777664 333233 3221 123322222221 122333333
Q ss_pred ---cCCHHHHHHhhc---CCC-C--hhhHHHHHHHHHHhccccCCC--CcChhhhhcccCCCChhHHHHHHHhhhh
Q 001817 738 ---LGSISEFLSRAL---QPP-E--PLSVKNAIEYLQIIGALDENE--NLTVLGRNLSMLPVEPKLGKMLILGAIF 802 (1009)
Q Consensus 738 ---~~~~~~fl~~~l---~pP-~--~~~v~~al~~L~~lgald~~~--~lT~lG~~ls~lpl~p~~~k~ll~~~~~ 802 (1009)
..++.+|+...+ +++ + .+.++.+++.|.+.|+|+.++ .+|++|+.++.+|++|..++.+..+..-
T Consensus 418 ~~~~~d~~~~l~~tf~~~~~~~~~l~~~v~~~l~~L~~~~~i~~~~~~~~t~lG~~~s~~~l~~~t~~~~~~~l~~ 493 (674)
T PRK01172 418 ASSMEDLILFYNETLMAIQNGVDEIDYYIESSLKFLKENGFIKGDVTLRATRLGKLTSDLYIDPESALILKSAFDH 493 (674)
T ss_pred cCCHHHHHHHHHhhhhHhcCchHHHHHHHHHHHHHHHHCCCcccCCcEeECHHHHHHHHhCCCHHHHHHHHHHhhc
Confidence 356777753322 322 2 467899999999999998654 5799999999999999999998876543
No 15
>PRK02362 ski2-like helicase; Provisional
Probab=100.00 E-value=5.1e-40 Score=408.56 Aligned_cols=427 Identities=20% Similarity=0.232 Sum_probs=285.5
Q ss_pred CCHHHHHHHHHHHHcCCeEEEEecCCCchhhhHHHHHHHHHHHHhcCCceEEEechhHHHHHHHHHHHHHHHh--CCccc
Q 001817 298 PSYKERDALLKAISENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAER--GEKLG 375 (1009)
Q Consensus 298 Pi~~~q~~il~~l~~~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~IvvtqPrR~La~qva~rva~e~--~~~~g 375 (1009)
|...|++++...+.++++++++||||||||+++.+++++.+. .++++++++|+|+||.|.++++.... |..++
T Consensus 24 l~p~Q~~ai~~~~~~g~nvlv~APTGSGKTlia~lail~~l~-----~~~kal~i~P~raLa~q~~~~~~~~~~~g~~v~ 98 (737)
T PRK02362 24 LYPPQAEAVEAGLLDGKNLLAAIPTASGKTLIAELAMLKAIA-----RGGKALYIVPLRALASEKFEEFERFEELGVRVG 98 (737)
T ss_pred CCHHHHHHHHHHHhCCCcEEEECCCcchHHHHHHHHHHHHHh-----cCCcEEEEeChHHHHHHHHHHHHHhhcCCCEEE
Confidence 444454555444889999999999999999999999998763 23467888899999999999997532 44444
Q ss_pred ceeeeeeeeccccCCCcEEEEEccHHHHHHHhcCC-CCCCccEEEEeCCCcCCC--cchHHHHHHHHHcccCCCCcEEEe
Q 001817 376 ESVGYKVRLEGMKGRDTRLMFCTTGILLRRLLVDR-SLRGVTHVIVDEIHERGM--NEDFLLIVLKELLPRRPELRLILM 452 (1009)
Q Consensus 376 ~~vGy~vr~e~~~~~~t~Iiv~T~g~Ll~~L~~~~-~l~~is~IIIDEaHeR~~--~~d~ll~llk~ll~~~~~lkvIlm 452 (1009)
...|-..... ......+|+||||+.+...+.+.. +++++++|||||+|..+- ....+..++.++....++.|+|+|
T Consensus 99 ~~tGd~~~~~-~~l~~~~IiV~Tpek~~~llr~~~~~l~~v~lvViDE~H~l~d~~rg~~le~il~rl~~~~~~~qii~l 177 (737)
T PRK02362 99 ISTGDYDSRD-EWLGDNDIIVATSEKVDSLLRNGAPWLDDITCVVVDEVHLIDSANRGPTLEVTLAKLRRLNPDLQVVAL 177 (737)
T ss_pred EEeCCcCccc-cccCCCCEEEECHHHHHHHHhcChhhhhhcCEEEEECccccCCCcchHHHHHHHHHHHhcCCCCcEEEE
Confidence 4444111111 112357899999999887776544 789999999999995321 122333444555555678999999
Q ss_pred ccCC-CHHHHHhhhCCCCeeccCCcccceeeE--ehhhHHHHhhhccCcccccccchhhhHHHHHHHHHHHHhhhhhHHH
Q 001817 453 SATL-NAELFSSYFGGAPMLHIPGFTYPVRAY--FLENILEMTRYRLNTYNQIDDYGQEKSWKMQKQALALRKRKSSIAS 529 (1009)
Q Consensus 453 SATl-~~~~~~~yf~~~pvi~i~g~~~pv~~~--yl~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 529 (1009)
|||+ |.+.+++|++... +....+..|+... +...+ ... . .
T Consensus 178 SATl~n~~~la~wl~~~~-~~~~~rpv~l~~~v~~~~~~------~~~------~--~---------------------- 220 (737)
T PRK02362 178 SATIGNADELADWLDAEL-VDSEWRPIDLREGVFYGGAI------HFD------D--S---------------------- 220 (737)
T ss_pred cccCCCHHHHHHHhCCCc-ccCCCCCCCCeeeEecCCee------ccc------c--c----------------------
Confidence 9999 8899999997532 2222333333221 10000 000 0 0
Q ss_pred HHHHHHHHhhhcchhhhhhhccccCCCCCcchhhHHHHHHHHHhhcCCCcEEEEcCCHhHHHHHHHHHHcCCC--C----
Q 001817 530 AVEDALEAADFREYSVQTQQSLSCWNPDSIGFNLIEHVLCHIVKKERPGAVLVFMTGWDDINSLKDQLQAHPL--L---- 603 (1009)
Q Consensus 530 ~v~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~~~~i~~l~~~L~~~~~--~---- 603 (1009)
...+.. + ..+.....+...+. ..+++||||+++.+++.++..|..... .
T Consensus 221 ------------------~~~~~~--~---~~~~~~~~~~~~~~--~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~ 275 (737)
T PRK02362 221 ------------------QREVEV--P---SKDDTLNLVLDTLE--EGGQCLVFVSSRRNAEGFAKRAASALKKTLTAAE 275 (737)
T ss_pred ------------------cccCCC--c---cchHHHHHHHHHHH--cCCCeEEEEeCHHHHHHHHHHHHHHhhhcCCHHH
Confidence 000000 0 00111122222222 467999999999999999888865311 0
Q ss_pred --------------CC---------CCCeEEEEecCCCCHHHHHhhcCCCCCCceEEEEecCccccccCCCCeeEEEeCC
Q 001817 604 --------------GD---------PSRVLLLACHGSMASSEQRLIFDKPEDGVRKIVLATNMAETSITINDVVFVIDCG 660 (1009)
Q Consensus 604 --------------~~---------~~~~~v~~lHs~l~~~er~~v~~~f~~G~~kVLVATniae~GIdIp~V~~VId~g 660 (1009)
.. .....+.+|||+|++++|+.+++.|++|.++|||||+++++|||+|++++||+.
T Consensus 276 ~~~~~~~~~~l~~~~~~~~~~~L~~~l~~gva~hHagl~~~eR~~ve~~Fr~G~i~VLvaT~tla~GvnlPa~~VVI~~- 354 (737)
T PRK02362 276 RAELAELAEEIREVSDTETSKDLADCVAKGAAFHHAGLSREHRELVEDAFRDRLIKVISSTPTLAAGLNLPARRVIIRD- 354 (737)
T ss_pred HHHHHHHHHHHHhccCccccHHHHHHHHhCEEeecCCCCHHHHHHHHHHHHcCCCeEEEechhhhhhcCCCceEEEEec-
Confidence 00 002368999999999999999999999999999999999999999999999973
Q ss_pred CCccccccCCCCCCcccccccCHHhHHhhhcccCCCCC---CcEEEecchh-----hhhhhccCCCccccccC------c
Q 001817 661 KAKETSYDALNNTPCLLPSWISKAAARQRRGRAGRVQP---GECYHLYPRY-----VYDAFADYQLPELLRTP------L 726 (1009)
Q Consensus 661 ~~k~~~yd~~~~~~~l~~~~iS~as~~QR~GRAGR~~~---G~c~~Lys~~-----~~~~l~~~~~PEi~r~~------L 726 (1009)
...||+..+. .++|..+|.||+|||||.+. |.|+.+.... .|+.+... .||-..+. |
T Consensus 355 ---~~~yd~~~g~-----~~~s~~~y~Qm~GRAGR~g~d~~G~~ii~~~~~~~~~~~~~~~l~~-~~~~i~S~l~~~~~l 425 (737)
T PRK02362 355 ---YRRYDGGAGM-----QPIPVLEYHQMAGRAGRPGLDPYGEAVLLAKSYDELDELFERYIWA-DPEDVRSKLATEPAL 425 (737)
T ss_pred ---ceeecCCCCc-----eeCCHHHHHHHhhcCCCCCCCCCceEEEEecCchhHHHHHHHHHhC-CCCceeecCCChhhH
Confidence 2346654322 46799999999999999863 9999998653 12333221 23323332 3
Q ss_pred hhhhhHhhhcC----cCCHHHHHHhhc-CCCC------hhhHHHHHHHHHHhccccCCCC---cChhhhhcccCCCChhH
Q 001817 727 QSLCLQIKSLQ----LGSISEFLSRAL-QPPE------PLSVKNAIEYLQIIGALDENEN---LTVLGRNLSMLPVEPKL 792 (1009)
Q Consensus 727 ~~~~L~lk~l~----~~~~~~fl~~~l-~pP~------~~~v~~al~~L~~lgald~~~~---lT~lG~~ls~lpl~p~~ 792 (1009)
...++...+.+ ..++.+|+...+ ..+. .+.++.+++.|.+.|+|+.+++ +|++|+.++.++++|..
T Consensus 426 ~~~lla~I~~~~~~~~~d~~~~l~~Tf~~~~~~~~~~l~~~v~~~l~~L~~~~~i~~~~~~~~~t~lG~~~s~~~l~~~t 505 (737)
T PRK02362 426 RTHVLSTIASGFARTRDGLLEFLEATFYATQTDDTGRLERVVDDVLDFLERNGMIEEDGETLEATELGHLVSRLYIDPLS 505 (737)
T ss_pred HHHHHHHHHhCccCCHHHHHHHHHhChHHhhccchHHHHHHHHHHHHHHHHCCCeeecCCeEeEChHHHHHHHhcCCHHH
Confidence 33344444443 345666654332 2221 2358999999999999987764 89999999999999999
Q ss_pred HHHHHHhhhh
Q 001817 793 GKMLILGAIF 802 (1009)
Q Consensus 793 ~k~ll~~~~~ 802 (1009)
+..+..+..-
T Consensus 506 ~~~~~~~l~~ 515 (737)
T PRK02362 506 AAEIIDGLEA 515 (737)
T ss_pred HHHHHHHhhh
Confidence 9999877543
No 16
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.7e-40 Score=353.52 Aligned_cols=318 Identities=21% Similarity=0.252 Sum_probs=236.2
Q ss_pred cCCCCHHHHHHHHHHHHcCCeEEEEecCCCchhhhHHHHHHHHHHHHhcCCceEEEechhHHHHHHHHHHHHHHHhCCcc
Q 001817 295 RSLPSYKERDALLKAISENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERGEKL 374 (1009)
Q Consensus 295 ~~LPi~~~q~~il~~l~~~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~IvvtqPrR~La~qva~rva~e~~~~~ 374 (1009)
-..|...|+++|..+ .+|+++|..|+||||||.++.++|++.++...+ ....+|+.|||+||.|+++.+.. +|...
T Consensus 81 ~~~PT~IQ~~aiP~~-L~g~dvIglAeTGSGKT~afaLPIl~~LL~~p~--~~~~lVLtPtRELA~QI~e~fe~-Lg~~i 156 (476)
T KOG0330|consen 81 WKKPTKIQSEAIPVA-LGGRDVIGLAETGSGKTGAFALPILQRLLQEPK--LFFALVLTPTRELAQQIAEQFEA-LGSGI 156 (476)
T ss_pred cCCCchhhhhhcchh-hCCCcEEEEeccCCCchhhhHHHHHHHHHcCCC--CceEEEecCcHHHHHHHHHHHHH-hcccc
Confidence 456888887777665 588999999999999999999999999997543 35667777999999999998833 22222
Q ss_pred cc----eee-eee-eeccccCCCcEEEEEccHHHHHHHhcCC--CCCCccEEEEeCCCcCCCcchHHHHHHHHHcccCCC
Q 001817 375 GE----SVG-YKV-RLEGMKGRDTRLMFCTTGILLRRLLVDR--SLRGVTHVIVDEIHERGMNEDFLLIVLKELLPRRPE 446 (1009)
Q Consensus 375 g~----~vG-y~v-r~e~~~~~~t~Iiv~T~g~Ll~~L~~~~--~l~~is~IIIDEaHeR~~~~d~ll~llk~ll~~~~~ 446 (1009)
|. .|| ... .......+.++|+|+|||.|.+.+.+.. .++.++++|+|||+ |-++.||...+=+.+-...++
T Consensus 157 glr~~~lvGG~~m~~q~~~L~kkPhilVaTPGrL~dhl~~Tkgf~le~lk~LVlDEAD-rlLd~dF~~~ld~ILk~ip~e 235 (476)
T KOG0330|consen 157 GLRVAVLVGGMDMMLQANQLSKKPHILVATPGRLWDHLENTKGFSLEQLKFLVLDEAD-RLLDMDFEEELDYILKVIPRE 235 (476)
T ss_pred CeEEEEEecCchHHHHHHHhhcCCCEEEeCcHHHHHHHHhccCccHHHhHHHhhchHH-hhhhhhhHHHHHHHHHhcCcc
Confidence 22 222 000 1112234678999999999999998554 78999999999999 778888877665555455678
Q ss_pred CcEEEeccCCCHH--HHHhhhCCCCeeccCCcccceeeEehhhHHHHhhhccCcccccccchhhhHHHHHHHHHHHHhhh
Q 001817 447 LRLILMSATLNAE--LFSSYFGGAPMLHIPGFTYPVRAYFLENILEMTRYRLNTYNQIDDYGQEKSWKMQKQALALRKRK 524 (1009)
Q Consensus 447 lkvIlmSATl~~~--~~~~yf~~~pvi~i~g~~~pv~~~yl~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 524 (1009)
.|.+++|||++.+ .+..- .-.-|+++.... +
T Consensus 236 rqt~LfsATMt~kv~kL~ra----------sl~~p~~v~~s~-------------------------------------k 268 (476)
T KOG0330|consen 236 RQTFLFSATMTKKVRKLQRA----------SLDNPVKVAVSS-------------------------------------K 268 (476)
T ss_pred ceEEEEEeecchhhHHHHhh----------ccCCCeEEeccc-------------------------------------h
Confidence 8999999999543 22211 011122221110 0
Q ss_pred hhHHHHHHHHHHHhhhcchhhhhhhccccCCCCCcchhhHHHHHHHHHhhcCCCcEEEEcCCHhHHHHHHHHHHcCCCCC
Q 001817 525 SSIASAVEDALEAADFREYSVQTQQSLSCWNPDSIGFNLIEHVLCHIVKKERPGAVLVFMTGWDDINSLKDQLQAHPLLG 604 (1009)
Q Consensus 525 ~~~~~~v~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~~~~i~~l~~~L~~~~~~~ 604 (1009)
.+..+.+.+.+.. +....+...+.++++...++++||||++....+.++-.|...
T Consensus 269 y~tv~~lkQ~ylf---------------------v~~k~K~~yLV~ll~e~~g~s~iVF~~t~~tt~~la~~L~~l---- 323 (476)
T KOG0330|consen 269 YQTVDHLKQTYLF---------------------VPGKDKDTYLVYLLNELAGNSVIVFCNTCNTTRFLALLLRNL---- 323 (476)
T ss_pred hcchHHhhhheEe---------------------ccccccchhHHHHHHhhcCCcEEEEEeccchHHHHHHHHHhc----
Confidence 0011111111110 011112234677777777789999999999999999999987
Q ss_pred CCCCeEEEEecCCCCHHHHHhhcCCCCCCceEEEEecCccccccCCCCeeEEEeCCCCccccccCCCCCCcccccccCHH
Q 001817 605 DPSRVLLLACHGSMASSEQRLIFDKPEDGVRKIVLATNMAETSITINDVVFVIDCGKAKETSYDALNNTPCLLPSWISKA 684 (1009)
Q Consensus 605 ~~~~~~v~~lHs~l~~~er~~v~~~f~~G~~kVLVATniae~GIdIp~V~~VId~g~~k~~~yd~~~~~~~l~~~~iS~a 684 (1009)
++...++||.|++..|...++.|++|.+.||+||+++++|+|||.|++|||+++|. +-.
T Consensus 324 ---g~~a~~LhGqmsq~~Rlg~l~~Fk~~~r~iLv~TDVaSRGLDip~Vd~VVNyDiP~------------------~sk 382 (476)
T KOG0330|consen 324 ---GFQAIPLHGQMSQSKRLGALNKFKAGARSILVCTDVASRGLDIPHVDVVVNYDIPT------------------HSK 382 (476)
T ss_pred ---CcceecccchhhHHHHHHHHHHHhccCCcEEEecchhcccCCCCCceEEEecCCCC------------------cHH
Confidence 78899999999999999999999999999999999999999999999999988776 556
Q ss_pred hHHhhhcccCCCC-CCcEEEecchhhh
Q 001817 685 AARQRRGRAGRVQ-PGECYHLYPRYVY 710 (1009)
Q Consensus 685 s~~QR~GRAGR~~-~G~c~~Lys~~~~ 710 (1009)
+|+||+||+||.| +|.++.|.+..+.
T Consensus 383 DYIHRvGRtaRaGrsG~~ItlVtqyDv 409 (476)
T KOG0330|consen 383 DYIHRVGRTARAGRSGKAITLVTQYDV 409 (476)
T ss_pred HHHHHcccccccCCCcceEEEEehhhh
Confidence 8999999999995 6999999988443
No 17
>PRK00254 ski2-like helicase; Provisional
Probab=100.00 E-value=3.4e-37 Score=382.38 Aligned_cols=431 Identities=19% Similarity=0.154 Sum_probs=273.8
Q ss_pred HHHHhhcC-CCCHHHHHHHHHHHHcCCeEEEEecCCCchhhhHHHHHHHHHHHHhcCCceEEEechhHHHHHHHHHHHHH
Q 001817 289 KMLEFRRS-LPSYKERDALLKAISENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVA 367 (1009)
Q Consensus 289 ~l~~~r~~-LPi~~~q~~il~~l~~~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~IvvtqPrR~La~qva~rva 367 (1009)
+.++.+.. -|...|++++...+.+++++++++|||||||+++.+++++.+.. .++++++++|+++||.|+++++.
T Consensus 14 ~~l~~~g~~~l~~~Q~~ai~~~~~~g~nvlv~apTGsGKT~~~~l~il~~l~~----~~~~~l~l~P~~aLa~q~~~~~~ 89 (720)
T PRK00254 14 RVLKERGIEELYPPQAEALKSGVLEGKNLVLAIPTASGKTLVAEIVMVNKLLR----EGGKAVYLVPLKALAEEKYREFK 89 (720)
T ss_pred HHHHhCCCCCCCHHHHHHHHHHHhCCCcEEEECCCCcHHHHHHHHHHHHHHHh----cCCeEEEEeChHHHHHHHHHHHH
Confidence 34444333 34445555554568899999999999999999999999987754 23578888899999999999887
Q ss_pred HH--hCCcccceeeeeeeeccccCCCcEEEEEccHHHHHHHhcCC-CCCCccEEEEeCCCcCCCc--chHHHHHHHHHcc
Q 001817 368 AE--RGEKLGESVGYKVRLEGMKGRDTRLMFCTTGILLRRLLVDR-SLRGVTHVIVDEIHERGMN--EDFLLIVLKELLP 442 (1009)
Q Consensus 368 ~e--~~~~~g~~vGy~vr~e~~~~~~t~Iiv~T~g~Ll~~L~~~~-~l~~is~IIIDEaHeR~~~--~d~ll~llk~ll~ 442 (1009)
.. +|..++...|-.. .......+++|+|+||+.+...+.... +++++++|||||+|..+-. ...+..++..+
T Consensus 90 ~~~~~g~~v~~~~Gd~~-~~~~~~~~~~IiV~Tpe~~~~ll~~~~~~l~~l~lvViDE~H~l~~~~rg~~le~il~~l-- 166 (720)
T PRK00254 90 DWEKLGLRVAMTTGDYD-STDEWLGKYDIIIATAEKFDSLLRHGSSWIKDVKLVVADEIHLIGSYDRGATLEMILTHM-- 166 (720)
T ss_pred HHhhcCCEEEEEeCCCC-CchhhhccCCEEEEcHHHHHHHHhCCchhhhcCCEEEEcCcCccCCccchHHHHHHHHhc--
Confidence 53 2333333333111 011112457899999999987776543 7899999999999953211 11222223322
Q ss_pred cCCCCcEEEeccCC-CHHHHHhhhCCCCeeccCCcccceeeEehhhHHHHhhhccCcccccccchhhhHHHHHHHHHHHH
Q 001817 443 RRPELRLILMSATL-NAELFSSYFGGAPMLHIPGFTYPVRAYFLENILEMTRYRLNTYNQIDDYGQEKSWKMQKQALALR 521 (1009)
Q Consensus 443 ~~~~lkvIlmSATl-~~~~~~~yf~~~pvi~i~g~~~pv~~~yl~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 521 (1009)
..+.|+|+||||+ |++.+++|++... +....+..|........ +. ....+ ..
T Consensus 167 -~~~~qiI~lSATl~n~~~la~wl~~~~-~~~~~rpv~l~~~~~~~-----~~-----~~~~~---~~------------ 219 (720)
T PRK00254 167 -LGRAQILGLSATVGNAEELAEWLNAEL-VVSDWRPVKLRKGVFYQ-----GF-----LFWED---GK------------ 219 (720)
T ss_pred -CcCCcEEEEEccCCCHHHHHHHhCCcc-ccCCCCCCcceeeEecC-----Ce-----eeccC---cc------------
Confidence 3568999999999 8999999997532 22233333332111000 00 00000 00
Q ss_pred hhhhhHHHHHHHHHHHhhhcchhhhhhhccccCCCCCcchhhHHHHHHHHHhhcCCCcEEEEcCCHhHHHHHHHHHHcCC
Q 001817 522 KRKSSIASAVEDALEAADFREYSVQTQQSLSCWNPDSIGFNLIEHVLCHIVKKERPGAVLVFMTGWDDINSLKDQLQAHP 601 (1009)
Q Consensus 522 ~~~~~~~~~v~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~~~~i~~l~~~L~~~~ 601 (1009)
.... .......+...+. .++++||||+++..++.++..|....
T Consensus 220 --~~~~---------------------------------~~~~~~~~~~~i~--~~~~vLVF~~sr~~~~~~a~~l~~~~ 262 (720)
T PRK00254 220 --IERF---------------------------------PNSWESLVYDAVK--KGKGALVFVNTRRSAEKEALELAKKI 262 (720)
T ss_pred --hhcc---------------------------------hHHHHHHHHHHHH--hCCCEEEEEcChHHHHHHHHHHHHHH
Confidence 0000 0001112222222 35789999999999988877664310
Q ss_pred --CC------------------C------CCCCeEEEEecCCCCHHHHHhhcCCCCCCceEEEEecCccccccCCCCeeE
Q 001817 602 --LL------------------G------DPSRVLLLACHGSMASSEQRLIFDKPEDGVRKIVLATNMAETSITINDVVF 655 (1009)
Q Consensus 602 --~~------------------~------~~~~~~v~~lHs~l~~~er~~v~~~f~~G~~kVLVATniae~GIdIp~V~~ 655 (1009)
.. . ......|.+|||+|++++|..+++.|++|.++|||||+++++|||+|++++
T Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~hHagl~~~eR~~ve~~F~~G~i~VLvaT~tLa~Gvnipa~~v 342 (720)
T PRK00254 263 KRFLTKPELRALKELADSLEENPTNEKLKKALRGGVAFHHAGLGRTERVLIEDAFREGLIKVITATPTLSAGINLPAFRV 342 (720)
T ss_pred HHhcCchhHHHHHHHHHHHhcCCCcHHHHHHHhhCEEEeCCCCCHHHHHHHHHHHHCCCCeEEEeCcHHhhhcCCCceEE
Confidence 00 0 001235999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCccccccCCCCCCcccccccCHHhHHhhhcccCCCC---CCcEEEecchhh----hhhhcc---------CCCc
Q 001817 656 VIDCGKAKETSYDALNNTPCLLPSWISKAAARQRRGRAGRVQ---PGECYHLYPRYV----YDAFAD---------YQLP 719 (1009)
Q Consensus 656 VId~g~~k~~~yd~~~~~~~l~~~~iS~as~~QR~GRAGR~~---~G~c~~Lys~~~----~~~l~~---------~~~P 719 (1009)
||... ..|+ ..+ ...++..+|.||+|||||.+ .|.++.+.+... ++.+.. .+.+
T Consensus 343 VI~~~----~~~~-~~~-----~~~~~~~~~~Qm~GRAGR~~~d~~G~~ii~~~~~~~~~~~~~~~~~~pe~l~s~l~~e 412 (720)
T PRK00254 343 IIRDT----KRYS-NFG-----WEDIPVLEIQQMMGRAGRPKYDEVGEAIIVATTEEPSKLMERYIFGKPEKLFSMLSNE 412 (720)
T ss_pred EECCc----eEcC-CCC-----ceeCCHHHHHHhhhccCCCCcCCCceEEEEecCcchHHHHHHHHhCCchhhhccCCch
Confidence 99632 2243 111 13457789999999999974 599998876433 333321 1122
Q ss_pred cccccCchhhhhHhhhcCcCCHHHHHHhhc---CCCC----hhhHHHHHHHHHHhccccCCC----CcChhhhhcccCCC
Q 001817 720 ELLRTPLQSLCLQIKSLQLGSISEFLSRAL---QPPE----PLSVKNAIEYLQIIGALDENE----NLTVLGRNLSMLPV 788 (1009)
Q Consensus 720 Ei~r~~L~~~~L~lk~l~~~~~~~fl~~~l---~pP~----~~~v~~al~~L~~lgald~~~----~lT~lG~~ls~lpl 788 (1009)
+.++..+...+..-..-...++.+|+..++ ..|+ ...++.+++.|.+.|+|+.++ .+|++|+++|.+++
T Consensus 413 s~l~~~ll~~i~~~~~~~~~~~~~~l~~Tf~~~~~~~~~~~~~~v~~~l~~L~~~~~i~~~~~~~~~~t~lG~~~s~~~i 492 (720)
T PRK00254 413 SAFRSQVLALITNFGVSNFKELVNFLERTFYAHQRKDLYSLEEKAKEIVYFLLENEFIDIDLEDRFIPLPLGIRTSQLYI 492 (720)
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHhCHHHHhhcChHhHHHHHHHHHHHHHHCCCeEEcCCCCEeeChHHHHHHHHhC
Confidence 233333322222111111234555665444 2234 245788899999999996542 47999999999999
Q ss_pred ChhHHHHHHHhh
Q 001817 789 EPKLGKMLILGA 800 (1009)
Q Consensus 789 ~p~~~k~ll~~~ 800 (1009)
+|..++++..+.
T Consensus 493 ~~~t~~~~~~~l 504 (720)
T PRK00254 493 DPLTAKKFKDAF 504 (720)
T ss_pred CHHHHHHHHHHH
Confidence 999999987664
No 18
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.2e-38 Score=362.07 Aligned_cols=327 Identities=20% Similarity=0.277 Sum_probs=238.7
Q ss_pred HhhcCCCCHHHHHHHHHHHHcCCeEEEEecCCCchhhhHHHHHHHHHHHH----hcCCceEEEechhHHHHHHHHHHHHH
Q 001817 292 EFRRSLPSYKERDALLKAISENQVVVVSGETGCGKTTQLPQYILESETEA----ARGAACSIICTQPRRISAMAVSERVA 367 (1009)
Q Consensus 292 ~~r~~LPi~~~q~~il~~l~~~~~vII~apTGSGKTt~~~~~ile~~~~~----~~~~~~~IvvtqPrR~La~qva~rva 367 (1009)
..-..-|+..|.+.+.. +..++++|..|.||||||+++.++++.++... .++..+.++|++|||+||.|+.+.+.
T Consensus 108 ~~g~~~PtpIQaq~wp~-~l~GrD~v~iA~TGSGKTLay~lP~i~~l~~~~~~~~~~~~P~vLVL~PTRELA~QV~~~~~ 186 (519)
T KOG0331|consen 108 EQGFEKPTPIQAQGWPI-ALSGRDLVGIARTGSGKTLAYLLPAIVHLNNEQGKLSRGDGPIVLVLAPTRELAVQVQAEAR 186 (519)
T ss_pred hcCCCCCchhhhcccce-eccCCceEEEeccCCcchhhhhhHHHHHHHhccccccCCCCCeEEEEcCcHHHHHHHHHHHH
Confidence 33446688887666554 55899999999999999999999999988752 24556789999999999999987775
Q ss_pred HHhCCccc--cee--e---eeeeeccccCCCcEEEEEccHHHHHHHhcCC-CCCCccEEEEeCCCcCCCcchHHHHHHHH
Q 001817 368 AERGEKLG--ESV--G---YKVRLEGMKGRDTRLMFCTTGILLRRLLVDR-SLRGVTHVIVDEIHERGMNEDFLLIVLKE 439 (1009)
Q Consensus 368 ~e~~~~~g--~~v--G---y~vr~e~~~~~~t~Iiv~T~g~Ll~~L~~~~-~l~~is~IIIDEaHeR~~~~d~ll~llk~ 439 (1009)
+. +..++ ..+ | +.... .......+|+|+|||+|++.+.... .|++++|+|+|||| |.++.+|-..+-+.
T Consensus 187 ~~-~~~~~~~~~cvyGG~~~~~Q~-~~l~~gvdiviaTPGRl~d~le~g~~~l~~v~ylVLDEAD-rMldmGFe~qI~~I 263 (519)
T KOG0331|consen 187 EF-GKSLRLRSTCVYGGAPKGPQL-RDLERGVDVVIATPGRLIDLLEEGSLNLSRVTYLVLDEAD-RMLDMGFEPQIRKI 263 (519)
T ss_pred HH-cCCCCccEEEEeCCCCccHHH-HHHhcCCcEEEeCChHHHHHHHcCCccccceeEEEeccHH-hhhccccHHHHHHH
Confidence 44 33333 111 1 11111 1223568999999999999998776 89999999999999 66888877776666
Q ss_pred Hccc-CCCCcEEEeccCCCHH--HHH-hhhCCCCeeccCCcccceeeEehhhHHHHhhhccCcccccccchhhhHHHHHH
Q 001817 440 LLPR-RPELRLILMSATLNAE--LFS-SYFGGAPMLHIPGFTYPVRAYFLENILEMTRYRLNTYNQIDDYGQEKSWKMQK 515 (1009)
Q Consensus 440 ll~~-~~~lkvIlmSATl~~~--~~~-~yf~~~pvi~i~g~~~pv~~~yl~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~ 515 (1009)
+-.. +++.|+++.|||.+.+ .|+ +|++ .|+-. .+-+.++.
T Consensus 264 l~~i~~~~rQtlm~saTwp~~v~~lA~~fl~-~~~~i--------~ig~~~~~--------------------------- 307 (519)
T KOG0331|consen 264 LSQIPRPDRQTLMFSATWPKEVRQLAEDFLN-NPIQI--------NVGNKKEL--------------------------- 307 (519)
T ss_pred HHhcCCCcccEEEEeeeccHHHHHHHHHHhc-CceEE--------Eecchhhh---------------------------
Confidence 6555 5566899999999654 333 3443 22111 11111000
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHhhhcchhhhhhhccccCCCCCcchhhHHHHHHHHHhhcCCCcEEEEcCCHhHHHHHHH
Q 001817 516 QALALRKRKSSIASAVEDALEAADFREYSVQTQQSLSCWNPDSIGFNLIEHVLCHIVKKERPGAVLVFMTGWDDINSLKD 595 (1009)
Q Consensus 516 ~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~~~~i~~l~~ 595 (1009)
.....+.+.+...+ .......+..+|..+. ...++++||||.++..++++..
T Consensus 308 ----------~a~~~i~qive~~~-----------------~~~K~~~l~~lL~~~~-~~~~~KvIIFc~tkr~~~~l~~ 359 (519)
T KOG0331|consen 308 ----------KANHNIRQIVEVCD-----------------ETAKLRKLGKLLEDIS-SDSEGKVIIFCETKRTCDELAR 359 (519)
T ss_pred ----------hhhcchhhhhhhcC-----------------HHHHHHHHHHHHHHHh-ccCCCcEEEEecchhhHHHHHH
Confidence 00001111111100 0011123344555554 4567899999999999999999
Q ss_pred HHHcCCCCCCCCCeEEEEecCCCCHHHHHhhcCCCCCCceEEEEecCccccccCCCCeeEEEeCCCCccccccCCCCCCc
Q 001817 596 QLQAHPLLGDPSRVLLLACHGSMASSEQRLIFDKPEDGVRKIVLATNMAETSITINDVVFVIDCGKAKETSYDALNNTPC 675 (1009)
Q Consensus 596 ~L~~~~~~~~~~~~~v~~lHs~l~~~er~~v~~~f~~G~~kVLVATniae~GIdIp~V~~VId~g~~k~~~yd~~~~~~~ 675 (1009)
.+... ++.+..+||+.++.+|..+++.|++|+..||||||+|++|+|||+|++|||+++|+
T Consensus 360 ~l~~~-------~~~a~~iHGd~sQ~eR~~~L~~FreG~~~vLVATdVAaRGLDi~dV~lVInydfP~------------ 420 (519)
T KOG0331|consen 360 NLRRK-------GWPAVAIHGDKSQSERDWVLKGFREGKSPVLVATDVAARGLDVPDVDLVINYDFPN------------ 420 (519)
T ss_pred HHHhc-------CcceeeecccccHHHHHHHHHhcccCCcceEEEcccccccCCCccccEEEeCCCCC------------
Confidence 99885 46799999999999999999999999999999999999999999999999987777
Q ss_pred ccccccCHHhHHhhhcccCCC-CCCcEEEecchhhhh
Q 001817 676 LLPSWISKAAARQRRGRAGRV-QPGECYHLYPRYVYD 711 (1009)
Q Consensus 676 l~~~~iS~as~~QR~GRAGR~-~~G~c~~Lys~~~~~ 711 (1009)
+..+|+||+||+||. +.|..|.+|+...+.
T Consensus 421 ------~vEdYVHRiGRTGRa~~~G~A~tfft~~~~~ 451 (519)
T KOG0331|consen 421 ------NVEDYVHRIGRTGRAGKKGTAITFFTSDNAK 451 (519)
T ss_pred ------CHHHHHhhcCccccCCCCceEEEEEeHHHHH
Confidence 677899999999997 569999999987664
No 19
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=100.00 E-value=2.1e-37 Score=366.72 Aligned_cols=313 Identities=19% Similarity=0.235 Sum_probs=224.8
Q ss_pred CCCCHHHHHHHHHHHHcCCeEEEEecCCCchhhhHHHHHHHHHHHHhcCCceEEEechhHHHHHHHHHHHHHHHhC----
Q 001817 296 SLPSYKERDALLKAISENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERG---- 371 (1009)
Q Consensus 296 ~LPi~~~q~~il~~l~~~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~IvvtqPrR~La~qva~rva~e~~---- 371 (1009)
.-|...| .++++.+.++++++++||||||||+++.+++++.+... ...+.+++++|||+||.|+++.+.....
T Consensus 25 ~~~t~iQ-~~ai~~~l~g~dvi~~a~TGsGKT~a~~lpil~~l~~~--~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~ 101 (460)
T PRK11776 25 TEMTPIQ-AQSLPAILAGKDVIAQAKTGSGKTAAFGLGLLQKLDVK--RFRVQALVLCPTRELADQVAKEIRRLARFIPN 101 (460)
T ss_pred CCCCHHH-HHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHhhhc--cCCceEEEEeCCHHHHHHHHHHHHHHHhhCCC
Confidence 3455555 55566677899999999999999999999999877432 2244667777999999999998866532
Q ss_pred Ccccceee-eee--eeccccCCCcEEEEEccHHHHHHHhcCC-CCCCccEEEEeCCCcCCCcchHHHHHHHHHcccCCCC
Q 001817 372 EKLGESVG-YKV--RLEGMKGRDTRLMFCTTGILLRRLLVDR-SLRGVTHVIVDEIHERGMNEDFLLIVLKELLPRRPEL 447 (1009)
Q Consensus 372 ~~~g~~vG-y~v--r~e~~~~~~t~Iiv~T~g~Ll~~L~~~~-~l~~is~IIIDEaHeR~~~~d~ll~llk~ll~~~~~l 447 (1009)
..+...+| ... ..+. ...+++|+|+|||.|++.+.... .++++++||+||||+. ++..+...+...+....++.
T Consensus 102 ~~v~~~~Gg~~~~~~~~~-l~~~~~IvV~Tp~rl~~~l~~~~~~l~~l~~lViDEad~~-l~~g~~~~l~~i~~~~~~~~ 179 (460)
T PRK11776 102 IKVLTLCGGVPMGPQIDS-LEHGAHIIVGTPGRILDHLRKGTLDLDALNTLVLDEADRM-LDMGFQDAIDAIIRQAPARR 179 (460)
T ss_pred cEEEEEECCCChHHHHHH-hcCCCCEEEEChHHHHHHHHcCCccHHHCCEEEEECHHHH-hCcCcHHHHHHHHHhCCccc
Confidence 22222222 111 1111 12568999999999999887655 6899999999999953 44444433333333344567
Q ss_pred cEEEeccCCCH--HHHHhhhCCCCe-eccCCcc--cceeeEehhhHHHHhhhccCcccccccchhhhHHHHHHHHHHHHh
Q 001817 448 RLILMSATLNA--ELFSSYFGGAPM-LHIPGFT--YPVRAYFLENILEMTRYRLNTYNQIDDYGQEKSWKMQKQALALRK 522 (1009)
Q Consensus 448 kvIlmSATl~~--~~~~~yf~~~pv-i~i~g~~--~pv~~~yl~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 522 (1009)
|++++|||++. ..+.+.|...|. +.+.... ..++.+|..-
T Consensus 180 q~ll~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~i~~~~~~~----------------------------------- 224 (460)
T PRK11776 180 QTLLFSATYPEGIAAISQRFQRDPVEVKVESTHDLPAIEQRFYEV----------------------------------- 224 (460)
T ss_pred EEEEEEecCcHHHHHHHHHhcCCCEEEEECcCCCCCCeeEEEEEe-----------------------------------
Confidence 89999999954 344444433222 2222111 0111111100
Q ss_pred hhhhHHHHHHHHHHHhhhcchhhhhhhccccCCCCCcchhhHHHHHHHHHhhcCCCcEEEEcCCHhHHHHHHHHHHcCCC
Q 001817 523 RKSSIASAVEDALEAADFREYSVQTQQSLSCWNPDSIGFNLIEHVLCHIVKKERPGAVLVFMTGWDDINSLKDQLQAHPL 602 (1009)
Q Consensus 523 ~~~~~~~~v~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~~~~i~~l~~~L~~~~~ 602 (1009)
+.......+..++.....+++||||+++++++.+++.|...
T Consensus 225 -------------------------------------~~~~k~~~l~~ll~~~~~~~~lVF~~t~~~~~~l~~~L~~~-- 265 (460)
T PRK11776 225 -------------------------------------SPDERLPALQRLLLHHQPESCVVFCNTKKECQEVADALNAQ-- 265 (460)
T ss_pred -------------------------------------CcHHHHHHHHHHHHhcCCCceEEEECCHHHHHHHHHHHHhC--
Confidence 00001223444455556778999999999999999999886
Q ss_pred CCCCCCeEEEEecCCCCHHHHHhhcCCCCCCceEEEEecCccccccCCCCeeEEEeCCCCccccccCCCCCCcccccccC
Q 001817 603 LGDPSRVLLLACHGSMASSEQRLIFDKPEDGVRKIVLATNMAETSITINDVVFVIDCGKAKETSYDALNNTPCLLPSWIS 682 (1009)
Q Consensus 603 ~~~~~~~~v~~lHs~l~~~er~~v~~~f~~G~~kVLVATniae~GIdIp~V~~VId~g~~k~~~yd~~~~~~~l~~~~iS 682 (1009)
++.+..+||+|++.+|+.+++.|++|..+|||||+++++|||+|++++||++|+|. +
T Consensus 266 -----~~~v~~~hg~~~~~eR~~~l~~F~~g~~~vLVaTdv~~rGiDi~~v~~VI~~d~p~------------------~ 322 (460)
T PRK11776 266 -----GFSALALHGDLEQRDRDQVLVRFANRSCSVLVATDVAARGLDIKALEAVINYELAR------------------D 322 (460)
T ss_pred -----CCcEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEecccccccchhcCCeEEEecCCC------------------C
Confidence 67799999999999999999999999999999999999999999999999988887 7
Q ss_pred HHhHHhhhcccCCCC-CCcEEEecchhhh
Q 001817 683 KAAARQRRGRAGRVQ-PGECYHLYPRYVY 710 (1009)
Q Consensus 683 ~as~~QR~GRAGR~~-~G~c~~Lys~~~~ 710 (1009)
..+|.||+|||||.+ .|.||.|++..+.
T Consensus 323 ~~~yiqR~GRtGR~g~~G~ai~l~~~~e~ 351 (460)
T PRK11776 323 PEVHVHRIGRTGRAGSKGLALSLVAPEEM 351 (460)
T ss_pred HhHhhhhcccccCCCCcceEEEEEchhHH
Confidence 778999999999995 5999999987654
No 20
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=100.00 E-value=2.1e-37 Score=364.43 Aligned_cols=318 Identities=20% Similarity=0.260 Sum_probs=226.4
Q ss_pred CCCHHHHHHHHHHHHcCCeEEEEecCCCchhhhHHHHHHHHHHHHh--cCCceEEEechhHHHHHHHHHHHHHHHh---C
Q 001817 297 LPSYKERDALLKAISENQVVVVSGETGCGKTTQLPQYILESETEAA--RGAACSIICTQPRRISAMAVSERVAAER---G 371 (1009)
Q Consensus 297 LPi~~~q~~il~~l~~~~~vII~apTGSGKTt~~~~~ile~~~~~~--~~~~~~IvvtqPrR~La~qva~rva~e~---~ 371 (1009)
-|... |.+.+.++.++++++++||||||||+++.+++++.+.... .+..++++|++||++||.|+++.+.... +
T Consensus 23 ~p~~i-Q~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~l~~~~~~~~~~~~~lil~Pt~eLa~Q~~~~~~~l~~~~~ 101 (434)
T PRK11192 23 RPTAI-QAEAIPPALDGRDVLGSAPTGTGKTAAFLLPALQHLLDFPRRKSGPPRILILTPTRELAMQVADQARELAKHTH 101 (434)
T ss_pred CCCHH-HHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCceEEEECCcHHHHHHHHHHHHHHHccCC
Confidence 35554 4555566668899999999999999999999998776421 2234688999999999999998776543 3
Q ss_pred Ccccceeeeee--eeccccCCCcEEEEEccHHHHHHHhcCC-CCCCccEEEEeCCCcCCCcchHHHHHHHHHcccCCCCc
Q 001817 372 EKLGESVGYKV--RLEGMKGRDTRLMFCTTGILLRRLLVDR-SLRGVTHVIVDEIHERGMNEDFLLIVLKELLPRRPELR 448 (1009)
Q Consensus 372 ~~~g~~vGy~v--r~e~~~~~~t~Iiv~T~g~Ll~~L~~~~-~l~~is~IIIDEaHeR~~~~d~ll~llk~ll~~~~~lk 448 (1009)
..++..+|-.. ........+.+|+|+|||+|++.+.... .+.++++|||||||.. +...+...+-..........|
T Consensus 102 ~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~~~~~~~~~~~v~~lViDEah~~-l~~~~~~~~~~i~~~~~~~~q 180 (434)
T PRK11192 102 LDIATITGGVAYMNHAEVFSENQDIVVATPGRLLQYIKEENFDCRAVETLILDEADRM-LDMGFAQDIETIAAETRWRKQ 180 (434)
T ss_pred cEEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCCcCcccCCEEEEECHHHH-hCCCcHHHHHHHHHhCccccE
Confidence 33333333100 0111123567899999999999987766 5889999999999942 333333332222223344568
Q ss_pred EEEeccCCCHH---HHHhhhCCCCee-ccCCcc---cceeeEehhhHHHHhhhccCcccccccchhhhHHHHHHHHHHHH
Q 001817 449 LILMSATLNAE---LFSSYFGGAPML-HIPGFT---YPVRAYFLENILEMTRYRLNTYNQIDDYGQEKSWKMQKQALALR 521 (1009)
Q Consensus 449 vIlmSATl~~~---~~~~yf~~~pvi-~i~g~~---~pv~~~yl~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 521 (1009)
+++||||++.+ .+.+++...|+. .+.... ..+...+.
T Consensus 181 ~~~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~------------------------------------ 224 (434)
T PRK11192 181 TLLFSATLEGDAVQDFAERLLNDPVEVEAEPSRRERKKIHQWYY------------------------------------ 224 (434)
T ss_pred EEEEEeecCHHHHHHHHHHHccCCEEEEecCCcccccCceEEEE------------------------------------
Confidence 99999999644 444444332221 110000 00000000
Q ss_pred hhhhhHHHHHHHHHHHhhhcchhhhhhhccccCCCCCcchhhHHHHHHHHHhhcCCCcEEEEcCCHhHHHHHHHHHHcCC
Q 001817 522 KRKSSIASAVEDALEAADFREYSVQTQQSLSCWNPDSIGFNLIEHVLCHIVKKERPGAVLVFMTGWDDINSLKDQLQAHP 601 (1009)
Q Consensus 522 ~~~~~~~~~v~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~~~~i~~l~~~L~~~~ 601 (1009)
.......+..++..++.....+++||||+++++++.+++.|...
T Consensus 225 -----------------------------------~~~~~~~k~~~l~~l~~~~~~~~~lVF~~s~~~~~~l~~~L~~~- 268 (434)
T PRK11192 225 -----------------------------------RADDLEHKTALLCHLLKQPEVTRSIVFVRTRERVHELAGWLRKA- 268 (434)
T ss_pred -----------------------------------EeCCHHHHHHHHHHHHhcCCCCeEEEEeCChHHHHHHHHHHHhC-
Confidence 00011223345666666656789999999999999999999875
Q ss_pred CCCCCCCeEEEEecCCCCHHHHHhhcCCCCCCceEEEEecCccccccCCCCeeEEEeCCCCccccccCCCCCCccccccc
Q 001817 602 LLGDPSRVLLLACHGSMASSEQRLIFDKPEDGVRKIVLATNMAETSITINDVVFVIDCGKAKETSYDALNNTPCLLPSWI 681 (1009)
Q Consensus 602 ~~~~~~~~~v~~lHs~l~~~er~~v~~~f~~G~~kVLVATniae~GIdIp~V~~VId~g~~k~~~yd~~~~~~~l~~~~i 681 (1009)
++.+..+||+|++.+|..+++.|++|.++|||||+++++|||+|+|++||++++|.
T Consensus 269 ------~~~~~~l~g~~~~~~R~~~l~~f~~G~~~vLVaTd~~~~GiDip~v~~VI~~d~p~------------------ 324 (434)
T PRK11192 269 ------GINCCYLEGEMVQAKRNEAIKRLTDGRVNVLVATDVAARGIDIDDVSHVINFDMPR------------------ 324 (434)
T ss_pred ------CCCEEEecCCCCHHHHHHHHHHHhCCCCcEEEEccccccCccCCCCCEEEEECCCC------------------
Confidence 56799999999999999999999999999999999999999999999999988776
Q ss_pred CHHhHHhhhcccCCCC-CCcEEEecchhhhhh
Q 001817 682 SKAAARQRRGRAGRVQ-PGECYHLYPRYVYDA 712 (1009)
Q Consensus 682 S~as~~QR~GRAGR~~-~G~c~~Lys~~~~~~ 712 (1009)
|...|.||+|||||.+ .|.++.+++..++..
T Consensus 325 s~~~yiqr~GR~gR~g~~g~ai~l~~~~d~~~ 356 (434)
T PRK11192 325 SADTYLHRIGRTGRAGRKGTAISLVEAHDHLL 356 (434)
T ss_pred CHHHHhhcccccccCCCCceEEEEecHHHHHH
Confidence 7789999999999985 599999998766543
No 21
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=4.9e-37 Score=359.79 Aligned_cols=317 Identities=18% Similarity=0.187 Sum_probs=222.3
Q ss_pred hhcCCCCHHHHHHHHHHHHcCCeEEEEecCCCchhhhHHHHHHHHHHHHhc-----CCceEEEechhHHHHHHHHHHHHH
Q 001817 293 FRRSLPSYKERDALLKAISENQVVVVSGETGCGKTTQLPQYILESETEAAR-----GAACSIICTQPRRISAMAVSERVA 367 (1009)
Q Consensus 293 ~r~~LPi~~~q~~il~~l~~~~~vII~apTGSGKTt~~~~~ile~~~~~~~-----~~~~~IvvtqPrR~La~qva~rva 367 (1009)
....-|...|+++| ..+.++++++++||||||||+++.+++++.+..... ...+.+++++|||+||.|+++.+.
T Consensus 26 ~g~~~pt~iQ~~ai-p~il~g~dvi~~ApTGsGKTla~llp~l~~l~~~~~~~~~~~~~~~~lil~PtreLa~Qi~~~~~ 104 (423)
T PRK04837 26 KGFHNCTPIQALAL-PLTLAGRDVAGQAQTGTGKTMAFLTATFHYLLSHPAPEDRKVNQPRALIMAPTRELAVQIHADAE 104 (423)
T ss_pred CCCCCCCHHHHHHH-HHHhCCCcEEEECCCCchHHHHHHHHHHHHHHhcccccccccCCceEEEECCcHHHHHHHHHHHH
Confidence 34456776665555 556789999999999999999999999988764321 234678888899999999988765
Q ss_pred HHhCCcccceeeeeeeecc------ccCCCcEEEEEccHHHHHHHhcCC-CCCCccEEEEeCCCcCCCcchHHHHHHHHH
Q 001817 368 AERGEKLGESVGYKVRLEG------MKGRDTRLMFCTTGILLRRLLVDR-SLRGVTHVIVDEIHERGMNEDFLLIVLKEL 440 (1009)
Q Consensus 368 ~e~~~~~g~~vGy~vr~e~------~~~~~t~Iiv~T~g~Ll~~L~~~~-~l~~is~IIIDEaHeR~~~~d~ll~llk~l 440 (1009)
... ...+..++....... ....+++|+|+|||+|++.+.... .++++++|||||||+. ++..+...+ +.+
T Consensus 105 ~l~-~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~~~~l~~v~~lViDEad~l-~~~~f~~~i-~~i 181 (423)
T PRK04837 105 PLA-QATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRM-FDLGFIKDI-RWL 181 (423)
T ss_pred HHh-ccCCceEEEEECCCCHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcccccccEEEEecHHHH-hhcccHHHH-HHH
Confidence 443 222333332221111 112457999999999999887654 7899999999999953 333333332 333
Q ss_pred cccCC---CCcEEEeccCCCHHH---HHhhhCCCCeeccCCcccc---eeeEehhhHHHHhhhccCcccccccchhhhHH
Q 001817 441 LPRRP---ELRLILMSATLNAEL---FSSYFGGAPMLHIPGFTYP---VRAYFLENILEMTRYRLNTYNQIDDYGQEKSW 511 (1009)
Q Consensus 441 l~~~~---~lkvIlmSATl~~~~---~~~yf~~~pvi~i~g~~~p---v~~~yl~~i~~~~~~~~~~~~~i~~~~~~~~~ 511 (1009)
+...+ ..+.+++|||++... ...++.+...+.+...... +...+. +
T Consensus 182 ~~~~~~~~~~~~~l~SAT~~~~~~~~~~~~~~~p~~i~v~~~~~~~~~i~~~~~-------------------~------ 236 (423)
T PRK04837 182 FRRMPPANQRLNMLFSATLSYRVRELAFEHMNNPEYVEVEPEQKTGHRIKEELF-------------------Y------ 236 (423)
T ss_pred HHhCCCccceeEEEEeccCCHHHHHHHHHHCCCCEEEEEcCCCcCCCceeEEEE-------------------e------
Confidence 33222 345789999996542 2234433222222111000 000000 0
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHhhhcchhhhhhhccccCCCCCcchhhHHHHHHHHHhhcCCCcEEEEcCCHhHHH
Q 001817 512 KMQKQALALRKRKSSIASAVEDALEAADFREYSVQTQQSLSCWNPDSIGFNLIEHVLCHIVKKERPGAVLVFMTGWDDIN 591 (1009)
Q Consensus 512 ~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~~~~i~ 591 (1009)
.....+...+..++.....+++||||+++..++
T Consensus 237 -----------------------------------------------~~~~~k~~~l~~ll~~~~~~~~lVF~~t~~~~~ 269 (423)
T PRK04837 237 -----------------------------------------------PSNEEKMRLLQTLIEEEWPDRAIIFANTKHRCE 269 (423)
T ss_pred -----------------------------------------------CCHHHHHHHHHHHHHhcCCCeEEEEECCHHHHH
Confidence 000111223444444455678999999999999
Q ss_pred HHHHHHHcCCCCCCCCCeEEEEecCCCCHHHHHhhcCCCCCCceEEEEecCccccccCCCCeeEEEeCCCCccccccCCC
Q 001817 592 SLKDQLQAHPLLGDPSRVLLLACHGSMASSEQRLIFDKPEDGVRKIVLATNMAETSITINDVVFVIDCGKAKETSYDALN 671 (1009)
Q Consensus 592 ~l~~~L~~~~~~~~~~~~~v~~lHs~l~~~er~~v~~~f~~G~~kVLVATniae~GIdIp~V~~VId~g~~k~~~yd~~~ 671 (1009)
.+++.|... ++.+..+||+|++++|..+++.|++|+++|||||+++++|||+|+|++||++++|.
T Consensus 270 ~l~~~L~~~-------g~~v~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTdv~~rGiDip~v~~VI~~d~P~-------- 334 (423)
T PRK04837 270 EIWGHLAAD-------GHRVGLLTGDVAQKKRLRILEEFTRGDLDILVATDVAARGLHIPAVTHVFNYDLPD-------- 334 (423)
T ss_pred HHHHHHHhC-------CCcEEEecCCCChhHHHHHHHHHHcCCCcEEEEechhhcCCCccccCEEEEeCCCC--------
Confidence 999999876 67799999999999999999999999999999999999999999999999977776
Q ss_pred CCCcccccccCHHhHHhhhcccCCCC-CCcEEEecchhhh
Q 001817 672 NTPCLLPSWISKAAARQRRGRAGRVQ-PGECYHLYPRYVY 710 (1009)
Q Consensus 672 ~~~~l~~~~iS~as~~QR~GRAGR~~-~G~c~~Lys~~~~ 710 (1009)
|..+|.||+|||||.| .|.++.|++++..
T Consensus 335 ----------s~~~yiqR~GR~gR~G~~G~ai~~~~~~~~ 364 (423)
T PRK04837 335 ----------DCEDYVHRIGRTGRAGASGHSISLACEEYA 364 (423)
T ss_pred ----------chhheEeccccccCCCCCeeEEEEeCHHHH
Confidence 6678889999999995 5999999987643
No 22
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=100.00 E-value=8.2e-37 Score=360.65 Aligned_cols=317 Identities=19% Similarity=0.216 Sum_probs=223.6
Q ss_pred cCCCCHHHHHHHHHHHHcCCeEEEEecCCCchhhhHHHHHHHHHHHHhc----CCceEEEechhHHHHHHHHHHHHHHHh
Q 001817 295 RSLPSYKERDALLKAISENQVVVVSGETGCGKTTQLPQYILESETEAAR----GAACSIICTQPRRISAMAVSERVAAER 370 (1009)
Q Consensus 295 ~~LPi~~~q~~il~~l~~~~~vII~apTGSGKTt~~~~~ile~~~~~~~----~~~~~IvvtqPrR~La~qva~rva~e~ 370 (1009)
..-|...|++. ++.+.+++++|++||||||||+++.+++++.+..... ....++++++|||+||.|+.+.+....
T Consensus 21 ~~~pt~iQ~~a-i~~il~g~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~aLil~PtreLa~Qi~~~~~~~~ 99 (456)
T PRK10590 21 YREPTPIQQQA-IPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYS 99 (456)
T ss_pred CCCCCHHHHHH-HHHHhCCCCEEEECCCCCcHHHHHHHHHHHHhhhcccccccCCCceEEEEeCcHHHHHHHHHHHHHHh
Confidence 34566655555 5667789999999999999999999999988754321 123468888899999999999987654
Q ss_pred CC---cccceee-eeeeec-cccCCCcEEEEEccHHHHHHHhcCC-CCCCccEEEEeCCCcCCCcchHHHHHHHHHcccC
Q 001817 371 GE---KLGESVG-YKVRLE-GMKGRDTRLMFCTTGILLRRLLVDR-SLRGVTHVIVDEIHERGMNEDFLLIVLKELLPRR 444 (1009)
Q Consensus 371 ~~---~~g~~vG-y~vr~e-~~~~~~t~Iiv~T~g~Ll~~L~~~~-~l~~is~IIIDEaHeR~~~~d~ll~llk~ll~~~ 444 (1009)
.. .....+| ...... ......++|+|+||++|++.+.... .++++++|||||||. .++..+...+...+....
T Consensus 100 ~~~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~TP~rL~~~~~~~~~~l~~v~~lViDEah~-ll~~~~~~~i~~il~~l~ 178 (456)
T PRK10590 100 KYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADR-MLDMGFIHDIRRVLAKLP 178 (456)
T ss_pred ccCCCEEEEEECCcCHHHHHHHHcCCCcEEEEChHHHHHHHHcCCcccccceEEEeecHHH-HhccccHHHHHHHHHhCC
Confidence 22 1111122 111000 1123467999999999999887655 789999999999994 344444433333332334
Q ss_pred CCCcEEEeccCCCHH--HHHh-hhCCCCeeccCCcccc---eeeEehhhHHHHhhhccCcccccccchhhhHHHHHHHHH
Q 001817 445 PELRLILMSATLNAE--LFSS-YFGGAPMLHIPGFTYP---VRAYFLENILEMTRYRLNTYNQIDDYGQEKSWKMQKQAL 518 (1009)
Q Consensus 445 ~~lkvIlmSATl~~~--~~~~-yf~~~pvi~i~g~~~p---v~~~yl~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 518 (1009)
+..|++++|||++.+ .+.. ++.+...+.+..+... +..++.
T Consensus 179 ~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~i~~~~~--------------------------------- 225 (456)
T PRK10590 179 AKRQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASEQVTQHVH--------------------------------- 225 (456)
T ss_pred ccCeEEEEeCCCcHHHHHHHHHHcCCCeEEEEecccccccceeEEEE---------------------------------
Confidence 567899999999643 4443 3333222222111000 000000
Q ss_pred HHHhhhhhHHHHHHHHHHHhhhcchhhhhhhccccCCCCCcchhhHHHHHHHHHhhcCCCcEEEEcCCHhHHHHHHHHHH
Q 001817 519 ALRKRKSSIASAVEDALEAADFREYSVQTQQSLSCWNPDSIGFNLIEHVLCHIVKKERPGAVLVFMTGWDDINSLKDQLQ 598 (1009)
Q Consensus 519 ~~~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~~~~i~~l~~~L~ 598 (1009)
..+......++..++......++||||+++.+++.+++.|.
T Consensus 226 ---------------------------------------~~~~~~k~~~l~~l~~~~~~~~~lVF~~t~~~~~~l~~~L~ 266 (456)
T PRK10590 226 ---------------------------------------FVDKKRKRELLSQMIGKGNWQQVLVFTRTKHGANHLAEQLN 266 (456)
T ss_pred ---------------------------------------EcCHHHHHHHHHHHHHcCCCCcEEEEcCcHHHHHHHHHHHH
Confidence 00001112234444555556789999999999999999998
Q ss_pred cCCCCCCCCCeEEEEecCCCCHHHHHhhcCCCCCCceEEEEecCccccccCCCCeeEEEeCCCCccccccCCCCCCcccc
Q 001817 599 AHPLLGDPSRVLLLACHGSMASSEQRLIFDKPEDGVRKIVLATNMAETSITINDVVFVIDCGKAKETSYDALNNTPCLLP 678 (1009)
Q Consensus 599 ~~~~~~~~~~~~v~~lHs~l~~~er~~v~~~f~~G~~kVLVATniae~GIdIp~V~~VId~g~~k~~~yd~~~~~~~l~~ 678 (1009)
.. ++.+..+||+|++++|..+++.|++|+++|||||+++++|||||+|++||++++|.
T Consensus 267 ~~-------g~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaTdv~~rGiDip~v~~VI~~~~P~--------------- 324 (456)
T PRK10590 267 KD-------GIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNYELPN--------------- 324 (456)
T ss_pred HC-------CCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEccHHhcCCCcccCCEEEEeCCCC---------------
Confidence 76 66789999999999999999999999999999999999999999999999988886
Q ss_pred cccCHHhHHhhhcccCCCC-CCcEEEecchhhh
Q 001817 679 SWISKAAARQRRGRAGRVQ-PGECYHLYPRYVY 710 (1009)
Q Consensus 679 ~~iS~as~~QR~GRAGR~~-~G~c~~Lys~~~~ 710 (1009)
+..+|.||+|||||.+ .|.|+.|++.++.
T Consensus 325 ---~~~~yvqR~GRaGR~g~~G~ai~l~~~~d~ 354 (456)
T PRK10590 325 ---VPEDYVHRIGRTGRAAATGEALSLVCVDEH 354 (456)
T ss_pred ---CHHHhhhhccccccCCCCeeEEEEecHHHH
Confidence 7779999999999995 5999999887654
No 23
>PTZ00110 helicase; Provisional
Probab=100.00 E-value=1.1e-36 Score=365.10 Aligned_cols=324 Identities=19% Similarity=0.220 Sum_probs=224.5
Q ss_pred hcCCCCHHHHHHHHHHHHcCCeEEEEecCCCchhhhHHHHHHHHHHHHh---cCCceEEEechhHHHHHHHHHHHHHHHh
Q 001817 294 RRSLPSYKERDALLKAISENQVVVVSGETGCGKTTQLPQYILESETEAA---RGAACSIICTQPRRISAMAVSERVAAER 370 (1009)
Q Consensus 294 r~~LPi~~~q~~il~~l~~~~~vII~apTGSGKTt~~~~~ile~~~~~~---~~~~~~IvvtqPrR~La~qva~rva~e~ 370 (1009)
...-|...|++. ++.+..++++|++||||||||+++.++++..+.... .+.++.++|++|||+||.|+.+.+.+..
T Consensus 149 g~~~pt~iQ~~a-ip~~l~G~dvI~~ApTGSGKTlaylLP~l~~i~~~~~~~~~~gp~~LIL~PTreLa~Qi~~~~~~~~ 227 (545)
T PTZ00110 149 GFTEPTPIQVQG-WPIALSGRDMIGIAETGSGKTLAFLLPAIVHINAQPLLRYGDGPIVLVLAPTRELAEQIREQCNKFG 227 (545)
T ss_pred CCCCCCHHHHHH-HHHHhcCCCEEEEeCCCChHHHHHHHHHHHHHHhcccccCCCCcEEEEECChHHHHHHHHHHHHHHh
Confidence 344577666555 556778999999999999999999999888765421 2335678888899999999998876643
Q ss_pred CCccccee--eeeeee----ccccCCCcEEEEEccHHHHHHHhcCC-CCCCccEEEEeCCCcCCCcchHHHHHHHHHccc
Q 001817 371 GEKLGESV--GYKVRL----EGMKGRDTRLMFCTTGILLRRLLVDR-SLRGVTHVIVDEIHERGMNEDFLLIVLKELLPR 443 (1009)
Q Consensus 371 ~~~~g~~v--Gy~vr~----e~~~~~~t~Iiv~T~g~Ll~~L~~~~-~l~~is~IIIDEaHeR~~~~d~ll~llk~ll~~ 443 (1009)
. ..+..+ .|.-.. .......++|+|+|||+|++.+.... .++++++|||||||. .++.++...+.+.+...
T Consensus 228 ~-~~~i~~~~~~gg~~~~~q~~~l~~~~~IlVaTPgrL~d~l~~~~~~l~~v~~lViDEAd~-mld~gf~~~i~~il~~~ 305 (545)
T PTZ00110 228 A-SSKIRNTVAYGGVPKRGQIYALRRGVEILIACPGRLIDFLESNVTNLRRVTYLVLDEADR-MLDMGFEPQIRKIVSQI 305 (545)
T ss_pred c-ccCccEEEEeCCCCHHHHHHHHHcCCCEEEECHHHHHHHHHcCCCChhhCcEEEeehHHh-hhhcchHHHHHHHHHhC
Confidence 2 222111 111000 00112457999999999999987665 789999999999994 45666655554444445
Q ss_pred CCCCcEEEeccCCCHH--HHHhh-hCCCCeeccCCcccceeeEehhhHHHHhhhccCcccccccchhhhHHHHHHHHHHH
Q 001817 444 RPELRLILMSATLNAE--LFSSY-FGGAPMLHIPGFTYPVRAYFLENILEMTRYRLNTYNQIDDYGQEKSWKMQKQALAL 520 (1009)
Q Consensus 444 ~~~lkvIlmSATl~~~--~~~~y-f~~~pvi~i~g~~~pv~~~yl~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 520 (1009)
+++.|++++|||++.+ .+.+. +...++...-+... .. .... .. ..+. ...
T Consensus 306 ~~~~q~l~~SAT~p~~v~~l~~~l~~~~~v~i~vg~~~-l~--~~~~--------i~--q~~~-~~~------------- 358 (545)
T PTZ00110 306 RPDRQTLMWSATWPKEVQSLARDLCKEEPVHVNVGSLD-LT--ACHN--------IK--QEVF-VVE------------- 358 (545)
T ss_pred CCCCeEEEEEeCCCHHHHHHHHHHhccCCEEEEECCCc-cc--cCCC--------ee--EEEE-EEe-------------
Confidence 6889999999999543 34433 33223211101000 00 0000 00 0000 000
Q ss_pred HhhhhhHHHHHHHHHHHhhhcchhhhhhhccccCCCCCcchhhHHHHHHHHHhhcCCCcEEEEcCCHhHHHHHHHHHHcC
Q 001817 521 RKRKSSIASAVEDALEAADFREYSVQTQQSLSCWNPDSIGFNLIEHVLCHIVKKERPGAVLVFMTGWDDINSLKDQLQAH 600 (1009)
Q Consensus 521 ~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~~~~i~~l~~~L~~~ 600 (1009)
.......+..++..+.. ..+++||||++++.++.++..|...
T Consensus 359 ------------------------------------~~~k~~~L~~ll~~~~~--~~~k~LIF~~t~~~a~~l~~~L~~~ 400 (545)
T PTZ00110 359 ------------------------------------EHEKRGKLKMLLQRIMR--DGDKILIFVETKKGADFLTKELRLD 400 (545)
T ss_pred ------------------------------------chhHHHHHHHHHHHhcc--cCCeEEEEecChHHHHHHHHHHHHc
Confidence 00000011112222221 4579999999999999999999865
Q ss_pred CCCCCCCCeEEEEecCCCCHHHHHhhcCCCCCCceEEEEecCccccccCCCCeeEEEeCCCCccccccCCCCCCcccccc
Q 001817 601 PLLGDPSRVLLLACHGSMASSEQRLIFDKPEDGVRKIVLATNMAETSITINDVVFVIDCGKAKETSYDALNNTPCLLPSW 680 (1009)
Q Consensus 601 ~~~~~~~~~~v~~lHs~l~~~er~~v~~~f~~G~~kVLVATniae~GIdIp~V~~VId~g~~k~~~yd~~~~~~~l~~~~ 680 (1009)
++.+..+||++++++|..+++.|++|+.+|||||+++++|||||+|++||++++|.
T Consensus 401 -------g~~~~~ihg~~~~~eR~~il~~F~~G~~~ILVaTdv~~rGIDi~~v~~VI~~d~P~----------------- 456 (545)
T PTZ00110 401 -------GWPALCIHGDKKQEERTWVLNEFKTGKSPIMIATDVASRGLDVKDVKYVINFDFPN----------------- 456 (545)
T ss_pred -------CCcEEEEECCCcHHHHHHHHHHHhcCCCcEEEEcchhhcCCCcccCCEEEEeCCCC-----------------
Confidence 56688999999999999999999999999999999999999999999999988887
Q ss_pred cCHHhHHhhhcccCCCC-CCcEEEecchhhh
Q 001817 681 ISKAAARQRRGRAGRVQ-PGECYHLYPRYVY 710 (1009)
Q Consensus 681 iS~as~~QR~GRAGR~~-~G~c~~Lys~~~~ 710 (1009)
+..+|.||+|||||.+ .|.||.++++...
T Consensus 457 -s~~~yvqRiGRtGR~G~~G~ai~~~~~~~~ 486 (545)
T PTZ00110 457 -QIEDYVHRIGRTGRAGAKGASYTFLTPDKY 486 (545)
T ss_pred -CHHHHHHHhcccccCCCCceEEEEECcchH
Confidence 7789999999999995 6999999997654
No 24
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=100.00 E-value=3.2e-36 Score=364.41 Aligned_cols=312 Identities=18% Similarity=0.203 Sum_probs=224.5
Q ss_pred CCCHHHHHHHHHHHHcCCeEEEEecCCCchhhhHHHHHHHHHHHHhcCCceEEEechhHHHHHHHHHHHHHHHhCCcccc
Q 001817 297 LPSYKERDALLKAISENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERGEKLGE 376 (1009)
Q Consensus 297 LPi~~~q~~il~~l~~~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~IvvtqPrR~La~qva~rva~e~~~~~g~ 376 (1009)
-|... |.+++..+.+++++|++||||||||+++.+++++.+... ...+.+||++|||+||.|+++.+....+...+.
T Consensus 28 ~ptpi-Q~~ai~~ll~g~dvl~~ApTGsGKT~af~lpll~~l~~~--~~~~~~LIL~PTreLa~Qv~~~l~~~~~~~~~i 104 (629)
T PRK11634 28 KPSPI-QAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLHNLDPE--LKAPQILVLAPTRELAVQVAEAMTDFSKHMRGV 104 (629)
T ss_pred CCCHH-HHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHHHhhhc--cCCCeEEEEeCcHHHHHHHHHHHHHHHhhcCCc
Confidence 35544 555666677899999999999999999999999876432 234577888899999999999987765432222
Q ss_pred eeeeeeeec------cccCCCcEEEEEccHHHHHHHhcCC-CCCCccEEEEeCCCcCCCcchHHHHHHHHHcccCCCCcE
Q 001817 377 SVGYKVRLE------GMKGRDTRLMFCTTGILLRRLLVDR-SLRGVTHVIVDEIHERGMNEDFLLIVLKELLPRRPELRL 449 (1009)
Q Consensus 377 ~vGy~vr~e------~~~~~~t~Iiv~T~g~Ll~~L~~~~-~l~~is~IIIDEaHeR~~~~d~ll~llk~ll~~~~~lkv 449 (1009)
.+....... ......++|+|+||+.|++.+.... .++++++|||||||+. +...+...+...+.......|+
T Consensus 105 ~v~~~~gG~~~~~q~~~l~~~~~IVVgTPgrl~d~l~r~~l~l~~l~~lVlDEAd~m-l~~gf~~di~~Il~~lp~~~q~ 183 (629)
T PRK11634 105 NVVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEM-LRMGFIEDVETIMAQIPEGHQT 183 (629)
T ss_pred eEEEEECCcCHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcchhhceEEEeccHHHH-hhcccHHHHHHHHHhCCCCCeE
Confidence 222111111 1122468999999999999988765 6899999999999974 3444443333333334457789
Q ss_pred EEeccCCCHH--H-HHhhhCCCCeeccCCccc---ceeeEehhhHHHHhhhccCcccccccchhhhHHHHHHHHHHHHhh
Q 001817 450 ILMSATLNAE--L-FSSYFGGAPMLHIPGFTY---PVRAYFLENILEMTRYRLNTYNQIDDYGQEKSWKMQKQALALRKR 523 (1009)
Q Consensus 450 IlmSATl~~~--~-~~~yf~~~pvi~i~g~~~---pv~~~yl~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 523 (1009)
++||||++.. . ...|+.+...+.+..... .+...|..
T Consensus 184 llfSAT~p~~i~~i~~~~l~~~~~i~i~~~~~~~~~i~q~~~~------------------------------------- 226 (629)
T PRK11634 184 ALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWT------------------------------------- 226 (629)
T ss_pred EEEEccCChhHHHHHHHHcCCCeEEEccCccccCCceEEEEEE-------------------------------------
Confidence 9999999543 2 334554433333322110 00000000
Q ss_pred hhhHHHHHHHHHHHhhhcchhhhhhhccccCCCCCcchhhHHHHHHHHHhhcCCCcEEEEcCCHhHHHHHHHHHHcCCCC
Q 001817 524 KSSIASAVEDALEAADFREYSVQTQQSLSCWNPDSIGFNLIEHVLCHIVKKERPGAVLVFMTGWDDINSLKDQLQAHPLL 603 (1009)
Q Consensus 524 ~~~~~~~v~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~~~~i~~l~~~L~~~~~~ 603 (1009)
+....+...+..++......++||||+++..++.+++.|...
T Consensus 227 -----------------------------------v~~~~k~~~L~~~L~~~~~~~~IVF~~tk~~a~~l~~~L~~~--- 268 (629)
T PRK11634 227 -----------------------------------VWGMRKNEALVRFLEAEDFDAAIIFVRTKNATLEVAEALERN--- 268 (629)
T ss_pred -----------------------------------echhhHHHHHHHHHHhcCCCCEEEEeccHHHHHHHHHHHHhC---
Confidence 000001122334444455678999999999999999999876
Q ss_pred CCCCCeEEEEecCCCCHHHHHhhcCCCCCCceEEEEecCccccccCCCCeeEEEeCCCCccccccCCCCCCcccccccCH
Q 001817 604 GDPSRVLLLACHGSMASSEQRLIFDKPEDGVRKIVLATNMAETSITINDVVFVIDCGKAKETSYDALNNTPCLLPSWISK 683 (1009)
Q Consensus 604 ~~~~~~~v~~lHs~l~~~er~~v~~~f~~G~~kVLVATniae~GIdIp~V~~VId~g~~k~~~yd~~~~~~~l~~~~iS~ 683 (1009)
++.+..+||+|++.+|..+++.|++|+++|||||+++++|||+|+|++||++++|. +.
T Consensus 269 ----g~~~~~lhgd~~q~~R~~il~~Fr~G~~~ILVATdv~arGIDip~V~~VI~~d~P~------------------~~ 326 (629)
T PRK11634 269 ----GYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLDVERISLVVNYDIPM------------------DS 326 (629)
T ss_pred ----CCCEEEeeCCCCHHHHHHHHHHHhCCCCCEEEEcchHhcCCCcccCCEEEEeCCCC------------------CH
Confidence 67799999999999999999999999999999999999999999999999977775 77
Q ss_pred HhHHhhhcccCCCCC-CcEEEecchhh
Q 001817 684 AAARQRRGRAGRVQP-GECYHLYPRYV 709 (1009)
Q Consensus 684 as~~QR~GRAGR~~~-G~c~~Lys~~~ 709 (1009)
.+|.||+|||||.+. |.++.+++...
T Consensus 327 e~yvqRiGRtGRaGr~G~ai~~v~~~e 353 (629)
T PRK11634 327 ESYVHRIGRTGRAGRAGRALLFVENRE 353 (629)
T ss_pred HHHHHHhccccCCCCcceEEEEechHH
Confidence 899999999999964 99999988654
No 25
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=1.3e-36 Score=361.06 Aligned_cols=326 Identities=17% Similarity=0.214 Sum_probs=227.4
Q ss_pred hhhHHHHHhhcCCCCHHHHHHHHHHHHcCCeEEEEecCCCchhhhHHHHHHHHHHHHhcC-----CceEEEechhHHHHH
Q 001817 285 PEGQKMLEFRRSLPSYKERDALLKAISENQVVVVSGETGCGKTTQLPQYILESETEAARG-----AACSIICTQPRRISA 359 (1009)
Q Consensus 285 ~~~~~l~~~r~~LPi~~~q~~il~~l~~~~~vII~apTGSGKTt~~~~~ile~~~~~~~~-----~~~~IvvtqPrR~La 359 (1009)
+.+.+.+....---.+..|.+.+..+.+|+++|+++|||||||+++.+++++.+...... ...++++++|||+||
T Consensus 96 ~~l~~~l~~~g~~~~~~iQ~~ai~~~~~G~dvi~~apTGSGKTlay~lpil~~l~~~~~~~~~~~~~~~aLil~PtreLa 175 (475)
T PRK01297 96 PELMHAIHDLGFPYCTPIQAQVLGYTLAGHDAIGRAQTGTGKTAAFLISIINQLLQTPPPKERYMGEPRALIIAPTRELV 175 (475)
T ss_pred HHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhcCcccccccCCceEEEEeCcHHHH
Confidence 333344443333334566777788899999999999999999999999999987653211 135778888999999
Q ss_pred HHHHHHHHHHh---CCcccceeee---eeeeccccCCCcEEEEEccHHHHHHHhcCC-CCCCccEEEEeCCCcCCCcchH
Q 001817 360 MAVSERVAAER---GEKLGESVGY---KVRLEGMKGRDTRLMFCTTGILLRRLLVDR-SLRGVTHVIVDEIHERGMNEDF 432 (1009)
Q Consensus 360 ~qva~rva~e~---~~~~g~~vGy---~vr~e~~~~~~t~Iiv~T~g~Ll~~L~~~~-~l~~is~IIIDEaHeR~~~~d~ 432 (1009)
.|+++.+.... +..+...+|- ...........++|+|+||++|+..+.... .++++++|||||+|.. .+..+
T Consensus 176 ~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~~~~~~~~Iiv~TP~~Ll~~~~~~~~~l~~l~~lViDEah~l-~~~~~ 254 (475)
T PRK01297 176 VQIAKDAAALTKYTGLNVMTFVGGMDFDKQLKQLEARFCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRM-LDMGF 254 (475)
T ss_pred HHHHHHHHHhhccCCCEEEEEEccCChHHHHHHHhCCCCCEEEECHHHHHHHHHcCCcccccCceEEechHHHH-Hhccc
Confidence 99998886553 2222222221 011111223467999999999998776544 7899999999999953 23333
Q ss_pred HHHHHHHHccc---CCCCcEEEeccCCCH--HHHHh-hhCCCCeeccCCcccc---eeeEehhhHHHHhhhccCcccccc
Q 001817 433 LLIVLKELLPR---RPELRLILMSATLNA--ELFSS-YFGGAPMLHIPGFTYP---VRAYFLENILEMTRYRLNTYNQID 503 (1009)
Q Consensus 433 ll~llk~ll~~---~~~lkvIlmSATl~~--~~~~~-yf~~~pvi~i~g~~~p---v~~~yl~~i~~~~~~~~~~~~~i~ 503 (1009)
.. .++.++.. ..+.|+|++|||++. ..+.+ |..+...+.+...... +..++.
T Consensus 255 ~~-~l~~i~~~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~------------------ 315 (475)
T PRK01297 255 IP-QVRQIIRQTPRKEERQTLLFSATFTDDVMNLAKQWTTDPAIVEIEPENVASDTVEQHVY------------------ 315 (475)
T ss_pred HH-HHHHHHHhCCCCCCceEEEEEeecCHHHHHHHHHhccCCEEEEeccCcCCCCcccEEEE------------------
Confidence 22 22333332 335689999999853 33333 3333222222111000 000000
Q ss_pred cchhhhHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhcchhhhhhhccccCCCCCcchhhHHHHHHHHHhhcCCCcEEEE
Q 001817 504 DYGQEKSWKMQKQALALRKRKSSIASAVEDALEAADFREYSVQTQQSLSCWNPDSIGFNLIEHVLCHIVKKERPGAVLVF 583 (1009)
Q Consensus 504 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVF 583 (1009)
.+.......++..++......++|||
T Consensus 316 ------------------------------------------------------~~~~~~k~~~l~~ll~~~~~~~~IVF 341 (475)
T PRK01297 316 ------------------------------------------------------AVAGSDKYKLLYNLVTQNPWERVMVF 341 (475)
T ss_pred ------------------------------------------------------EecchhHHHHHHHHHHhcCCCeEEEE
Confidence 00000112234445555556799999
Q ss_pred cCCHhHHHHHHHHHHcCCCCCCCCCeEEEEecCCCCHHHHHhhcCCCCCCceEEEEecCccccccCCCCeeEEEeCCCCc
Q 001817 584 MTGWDDINSLKDQLQAHPLLGDPSRVLLLACHGSMASSEQRLIFDKPEDGVRKIVLATNMAETSITINDVVFVIDCGKAK 663 (1009)
Q Consensus 584 l~~~~~i~~l~~~L~~~~~~~~~~~~~v~~lHs~l~~~er~~v~~~f~~G~~kVLVATniae~GIdIp~V~~VId~g~~k 663 (1009)
|+++++++.+++.|... ++.+..+||+++.++|.++++.|++|+++|||||+++++|||||++++||++|+|.
T Consensus 342 ~~s~~~~~~l~~~L~~~-------~~~~~~~~g~~~~~~R~~~~~~Fr~G~~~vLvaT~~l~~GIDi~~v~~VI~~~~P~ 414 (475)
T PRK01297 342 ANRKDEVRRIEERLVKD-------GINAAQLSGDVPQHKRIKTLEGFREGKIRVLVATDVAGRGIHIDGISHVINFTLPE 414 (475)
T ss_pred eCCHHHHHHHHHHHHHc-------CCCEEEEECCCCHHHHHHHHHHHhCCCCcEEEEccccccCCcccCCCEEEEeCCCC
Confidence 99999999999999875 56688999999999999999999999999999999999999999999999998887
Q ss_pred cccccCCCCCCcccccccCHHhHHhhhcccCCCC-CCcEEEecchhh
Q 001817 664 ETSYDALNNTPCLLPSWISKAAARQRRGRAGRVQ-PGECYHLYPRYV 709 (1009)
Q Consensus 664 ~~~yd~~~~~~~l~~~~iS~as~~QR~GRAGR~~-~G~c~~Lys~~~ 709 (1009)
|.++|+||+|||||.+ .|.++.++++++
T Consensus 415 ------------------s~~~y~Qr~GRaGR~g~~g~~i~~~~~~d 443 (475)
T PRK01297 415 ------------------DPDDYVHRIGRTGRAGASGVSISFAGEDD 443 (475)
T ss_pred ------------------CHHHHHHhhCccCCCCCCceEEEEecHHH
Confidence 8899999999999995 599999988763
No 26
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=3e-36 Score=362.65 Aligned_cols=315 Identities=17% Similarity=0.189 Sum_probs=221.5
Q ss_pred hcCCCCHHHHHHHHHHHHcCCeEEEEecCCCchhhhHHHHHHHHHHHHh-----cCCceEEEechhHHHHHHHHHHHHHH
Q 001817 294 RRSLPSYKERDALLKAISENQVVVVSGETGCGKTTQLPQYILESETEAA-----RGAACSIICTQPRRISAMAVSERVAA 368 (1009)
Q Consensus 294 r~~LPi~~~q~~il~~l~~~~~vII~apTGSGKTt~~~~~ile~~~~~~-----~~~~~~IvvtqPrR~La~qva~rva~ 368 (1009)
...-|...|++. +..+.+++++|++||||||||+++.+++++.+.... ....+++||++|||+||.|+++.+..
T Consensus 28 g~~~ptpiQ~~~-ip~~l~G~Dvi~~ApTGSGKTlafllpil~~l~~~~~~~~~~~~~~raLIl~PTreLa~Qi~~~~~~ 106 (572)
T PRK04537 28 GFTRCTPIQALT-LPVALPGGDVAGQAQTGTGKTLAFLVAVMNRLLSRPALADRKPEDPRALILAPTRELAIQIHKDAVK 106 (572)
T ss_pred CCCCCCHHHHHH-HHHHhCCCCEEEEcCCCCcHHHHHHHHHHHHHHhcccccccccCCceEEEEeCcHHHHHHHHHHHHH
Confidence 344566666555 556779999999999999999999999998876421 11246788888999999999998755
Q ss_pred HhCCcccceeeeeeeec------cccCCCcEEEEEccHHHHHHHhcCC--CCCCccEEEEeCCCcCCCcchHHHHHHHHH
Q 001817 369 ERGEKLGESVGYKVRLE------GMKGRDTRLMFCTTGILLRRLLVDR--SLRGVTHVIVDEIHERGMNEDFLLIVLKEL 440 (1009)
Q Consensus 369 e~~~~~g~~vGy~vr~e------~~~~~~t~Iiv~T~g~Ll~~L~~~~--~l~~is~IIIDEaHeR~~~~d~ll~llk~l 440 (1009)
. +...+..++.-.... .....+.+|+|+||++|++.+.... .+..+++|||||||+. ++..+... +..+
T Consensus 107 l-~~~~~i~v~~l~Gg~~~~~q~~~l~~~~dIiV~TP~rL~~~l~~~~~~~l~~v~~lViDEAh~l-ld~gf~~~-i~~i 183 (572)
T PRK04537 107 F-GADLGLRFALVYGGVDYDKQRELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEADRM-FDLGFIKD-IRFL 183 (572)
T ss_pred H-hccCCceEEEEECCCCHHHHHHHHhCCCCEEEECHHHHHHHHHhccccchhheeeeEecCHHHH-hhcchHHH-HHHH
Confidence 4 333333333211111 1122457899999999999887653 5788999999999953 33333322 2222
Q ss_pred cc---cCCCCcEEEeccCCCHHH---HHhhhCCCCeeccCCcccc---eeeEehhhHHHHhhhccCcccccccchhhhHH
Q 001817 441 LP---RRPELRLILMSATLNAEL---FSSYFGGAPMLHIPGFTYP---VRAYFLENILEMTRYRLNTYNQIDDYGQEKSW 511 (1009)
Q Consensus 441 l~---~~~~lkvIlmSATl~~~~---~~~yf~~~pvi~i~g~~~p---v~~~yl~~i~~~~~~~~~~~~~i~~~~~~~~~ 511 (1009)
+. .+.+.|+++||||++... ...++.....+.+...... +...+..
T Consensus 184 l~~lp~~~~~q~ll~SATl~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~------------------------- 238 (572)
T PRK04537 184 LRRMPERGTRQTLLFSATLSHRVLELAYEHMNEPEKLVVETETITAARVRQRIYF------------------------- 238 (572)
T ss_pred HHhcccccCceEEEEeCCccHHHHHHHHHHhcCCcEEEeccccccccceeEEEEe-------------------------
Confidence 22 223678999999996542 2334433222211111000 0000000
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHhhhcchhhhhhhccccCCCCCcchhhHHHHHHHHHhhcCCCcEEEEcCCHhHHH
Q 001817 512 KMQKQALALRKRKSSIASAVEDALEAADFREYSVQTQQSLSCWNPDSIGFNLIEHVLCHIVKKERPGAVLVFMTGWDDIN 591 (1009)
Q Consensus 512 ~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~~~~i~ 591 (1009)
.........+..++......++||||+++..++
T Consensus 239 -----------------------------------------------~~~~~k~~~L~~ll~~~~~~k~LVF~nt~~~ae 271 (572)
T PRK04537 239 -----------------------------------------------PADEEKQTLLLGLLSRSEGARTMVFVNTKAFVE 271 (572)
T ss_pred -----------------------------------------------cCHHHHHHHHHHHHhcccCCcEEEEeCCHHHHH
Confidence 000011122344445555679999999999999
Q ss_pred HHHHHHHcCCCCCCCCCeEEEEecCCCCHHHHHhhcCCCCCCceEEEEecCccccccCCCCeeEEEeCCCCccccccCCC
Q 001817 592 SLKDQLQAHPLLGDPSRVLLLACHGSMASSEQRLIFDKPEDGVRKIVLATNMAETSITINDVVFVIDCGKAKETSYDALN 671 (1009)
Q Consensus 592 ~l~~~L~~~~~~~~~~~~~v~~lHs~l~~~er~~v~~~f~~G~~kVLVATniae~GIdIp~V~~VId~g~~k~~~yd~~~ 671 (1009)
.+++.|... ++.+..+||+|++.+|..+++.|++|+++|||||+++++|||+|+|++||++++|.
T Consensus 272 ~l~~~L~~~-------g~~v~~lhg~l~~~eR~~il~~Fr~G~~~VLVaTdv~arGIDip~V~~VInyd~P~-------- 336 (572)
T PRK04537 272 RVARTLERH-------GYRVGVLSGDVPQKKRESLLNRFQKGQLEILVATDVAARGLHIDGVKYVYNYDLPF-------- 336 (572)
T ss_pred HHHHHHHHc-------CCCEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEehhhhcCCCccCCCEEEEcCCCC--------
Confidence 999999876 56799999999999999999999999999999999999999999999999987775
Q ss_pred CCCcccccccCHHhHHhhhcccCCCC-CCcEEEecchhh
Q 001817 672 NTPCLLPSWISKAAARQRRGRAGRVQ-PGECYHLYPRYV 709 (1009)
Q Consensus 672 ~~~~l~~~~iS~as~~QR~GRAGR~~-~G~c~~Lys~~~ 709 (1009)
|..+|+||+|||||.+ .|.|+.|++...
T Consensus 337 ----------s~~~yvqRiGRaGR~G~~G~ai~~~~~~~ 365 (572)
T PRK04537 337 ----------DAEDYVHRIGRTARLGEEGDAISFACERY 365 (572)
T ss_pred ----------CHHHHhhhhcccccCCCCceEEEEecHHH
Confidence 7789999999999995 599999987653
No 27
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=100.00 E-value=3e-36 Score=360.35 Aligned_cols=316 Identities=19% Similarity=0.214 Sum_probs=220.6
Q ss_pred cCCCCHHHHHHHHHHHHcCCeEEEEecCCCchhhhHHHHHHHHHHHHh-----cCCceEEEechhHHHHHHHHHHHHHHH
Q 001817 295 RSLPSYKERDALLKAISENQVVVVSGETGCGKTTQLPQYILESETEAA-----RGAACSIICTQPRRISAMAVSERVAAE 369 (1009)
Q Consensus 295 ~~LPi~~~q~~il~~l~~~~~vII~apTGSGKTt~~~~~ile~~~~~~-----~~~~~~IvvtqPrR~La~qva~rva~e 369 (1009)
..-|...|+++| +.+..+++++++||||||||+++.++++..+.... .+.++.+++++|||+||.|+.+.+...
T Consensus 141 ~~~ptpiQ~~ai-p~il~g~dviv~ApTGSGKTlayllPil~~l~~~~~~~~~~~~~~~aLIL~PTreLa~Qi~~~~~~l 219 (518)
T PLN00206 141 YEFPTPIQMQAI-PAALSGRSLLVSADTGSGKTASFLVPIISRCCTIRSGHPSEQRNPLAMVLTPTRELCVQVEDQAKVL 219 (518)
T ss_pred CCCCCHHHHHHH-HHHhcCCCEEEEecCCCCccHHHHHHHHHHHHhhccccccccCCceEEEEeCCHHHHHHHHHHHHHH
Confidence 456777766665 55668999999999999999999999998775321 224567888889999999988877544
Q ss_pred hCCcccceeeeeeeec------cccCCCcEEEEEccHHHHHHHhcCC-CCCCccEEEEeCCCcCCCcchHHHHHHHHHcc
Q 001817 370 RGEKLGESVGYKVRLE------GMKGRDTRLMFCTTGILLRRLLVDR-SLRGVTHVIVDEIHERGMNEDFLLIVLKELLP 442 (1009)
Q Consensus 370 ~~~~~g~~vGy~vr~e------~~~~~~t~Iiv~T~g~Ll~~L~~~~-~l~~is~IIIDEaHeR~~~~d~ll~llk~ll~ 442 (1009)
. ...+..+......+ .....+.+|+|+|||+|++.+.... .++++++|||||||.. ++..+... +..++.
T Consensus 220 ~-~~~~~~~~~~~gG~~~~~q~~~l~~~~~IiV~TPgrL~~~l~~~~~~l~~v~~lViDEad~m-l~~gf~~~-i~~i~~ 296 (518)
T PLN00206 220 G-KGLPFKTALVVGGDAMPQQLYRIQQGVELIVGTPGRLIDLLSKHDIELDNVSVLVLDEVDCM-LERGFRDQ-VMQIFQ 296 (518)
T ss_pred h-CCCCceEEEEECCcchHHHHHHhcCCCCEEEECHHHHHHHHHcCCccchheeEEEeecHHHH-hhcchHHH-HHHHHH
Confidence 3 22222111111111 0122457999999999999887655 7899999999999952 33333322 233334
Q ss_pred cCCCCcEEEeccCCCH--HHHHhhhCCCCeeccCCcc-cc---eeeEehhhHHHHhhhccCcccccccchhhhHHHHHHH
Q 001817 443 RRPELRLILMSATLNA--ELFSSYFGGAPMLHIPGFT-YP---VRAYFLENILEMTRYRLNTYNQIDDYGQEKSWKMQKQ 516 (1009)
Q Consensus 443 ~~~~lkvIlmSATl~~--~~~~~yf~~~pvi~i~g~~-~p---v~~~yl~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 516 (1009)
..++.|++++|||++. +.+.+++...++....+.. .+ +...+. +...
T Consensus 297 ~l~~~q~l~~SATl~~~v~~l~~~~~~~~~~i~~~~~~~~~~~v~q~~~-------------------~~~~-------- 349 (518)
T PLN00206 297 ALSQPQVLLFSATVSPEVEKFASSLAKDIILISIGNPNRPNKAVKQLAI-------------------WVET-------- 349 (518)
T ss_pred hCCCCcEEEEEeeCCHHHHHHHHHhCCCCEEEEeCCCCCCCcceeEEEE-------------------eccc--------
Confidence 4467899999999954 4566666544332111111 00 000000 0000
Q ss_pred HHHHHhhhhhHHHHHHHHHHHhhhcchhhhhhhccccCCCCCcchhhHHHHHHHHHhh--cCCCcEEEEcCCHhHHHHHH
Q 001817 517 ALALRKRKSSIASAVEDALEAADFREYSVQTQQSLSCWNPDSIGFNLIEHVLCHIVKK--ERPGAVLVFMTGWDDINSLK 594 (1009)
Q Consensus 517 ~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~--~~~g~iLVFl~~~~~i~~l~ 594 (1009)
......+..++.. ...+++|||++++..++.++
T Consensus 350 ---------------------------------------------~~k~~~l~~~l~~~~~~~~~~iVFv~s~~~a~~l~ 384 (518)
T PLN00206 350 ---------------------------------------------KQKKQKLFDILKSKQHFKPPAVVFVSSRLGADLLA 384 (518)
T ss_pred ---------------------------------------------hhHHHHHHHHHHhhcccCCCEEEEcCCchhHHHHH
Confidence 0000011122221 12368999999999999999
Q ss_pred HHHHcCCCCCCCCCeEEEEecCCCCHHHHHhhcCCCCCCceEEEEecCccccccCCCCeeEEEeCCCCccccccCCCCCC
Q 001817 595 DQLQAHPLLGDPSRVLLLACHGSMASSEQRLIFDKPEDGVRKIVLATNMAETSITINDVVFVIDCGKAKETSYDALNNTP 674 (1009)
Q Consensus 595 ~~L~~~~~~~~~~~~~v~~lHs~l~~~er~~v~~~f~~G~~kVLVATniae~GIdIp~V~~VId~g~~k~~~yd~~~~~~ 674 (1009)
+.|... .++.+..+||+++.++|..+++.|++|+.+|||||+++++|||+|+|++||++++|.
T Consensus 385 ~~L~~~------~g~~~~~~Hg~~~~~eR~~il~~Fr~G~~~ILVaTdvl~rGiDip~v~~VI~~d~P~----------- 447 (518)
T PLN00206 385 NAITVV------TGLKALSIHGEKSMKERREVMKSFLVGEVPVIVATGVLGRGVDLLRVRQVIIFDMPN----------- 447 (518)
T ss_pred HHHhhc------cCcceEEeeCCCCHHHHHHHHHHHHCCCCCEEEEecHhhccCCcccCCEEEEeCCCC-----------
Confidence 999753 156688999999999999999999999999999999999999999999999988776
Q ss_pred cccccccCHHhHHhhhcccCCCC-CCcEEEecchhhh
Q 001817 675 CLLPSWISKAAARQRRGRAGRVQ-PGECYHLYPRYVY 710 (1009)
Q Consensus 675 ~l~~~~iS~as~~QR~GRAGR~~-~G~c~~Lys~~~~ 710 (1009)
|..+|+||+|||||.+ .|.++.+++.+..
T Consensus 448 -------s~~~yihRiGRaGR~g~~G~ai~f~~~~~~ 477 (518)
T PLN00206 448 -------TIKEYIHQIGRASRMGEKGTAIVFVNEEDR 477 (518)
T ss_pred -------CHHHHHHhccccccCCCCeEEEEEEchhHH
Confidence 7889999999999996 5999999987653
No 28
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=7.2e-36 Score=355.03 Aligned_cols=320 Identities=22% Similarity=0.310 Sum_probs=235.7
Q ss_pred HHHhhcCCCCHHHHHHHHHHHHcCCeEEEEecCCCchhhhHHHHHHHHHHHHhcCCceEEEechhHHHHHHHHHHHHHHH
Q 001817 290 MLEFRRSLPSYKERDALLKAISENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAE 369 (1009)
Q Consensus 290 l~~~r~~LPi~~~q~~il~~l~~~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~IvvtqPrR~La~qva~rva~e 369 (1009)
+.+....-|...|+..|..+ ..++++++.|+||||||.++.+++++.+...........++++|||+||.|+++.+...
T Consensus 44 l~~~gf~~pt~IQ~~~IP~~-l~g~Dvi~~A~TGsGKT~Af~lP~l~~l~~~~~~~~~~aLil~PTRELA~Qi~~~~~~~ 122 (513)
T COG0513 44 LKDLGFEEPTPIQLAAIPLI-LAGRDVLGQAQTGTGKTAAFLLPLLQKILKSVERKYVSALILAPTRELAVQIAEELRKL 122 (513)
T ss_pred HHHcCCCCCCHHHHHHHHHH-hCCCCEEEECCCCChHHHHHHHHHHHHHhcccccCCCceEEECCCHHHHHHHHHHHHHH
Confidence 33334567888887776665 57799999999999999999999999965311111111667779999999999988665
Q ss_pred hCCc----ccceee---eeeeeccccCCCcEEEEEccHHHHHHHhcCC-CCCCccEEEEeCCCcCCCcchHHHHHHHHHc
Q 001817 370 RGEK----LGESVG---YKVRLEGMKGRDTRLMFCTTGILLRRLLVDR-SLRGVTHVIVDEIHERGMNEDFLLIVLKELL 441 (1009)
Q Consensus 370 ~~~~----~g~~vG---y~vr~e~~~~~~t~Iiv~T~g~Ll~~L~~~~-~l~~is~IIIDEaHeR~~~~d~ll~llk~ll 441 (1009)
.... +...+| +..+..... ...+|+|+|||+|++++.... .++++.++|+|||+ |.++..|...+-+.+.
T Consensus 123 ~~~~~~~~~~~i~GG~~~~~q~~~l~-~~~~ivVaTPGRllD~i~~~~l~l~~v~~lVlDEAD-rmLd~Gf~~~i~~I~~ 200 (513)
T COG0513 123 GKNLGGLRVAVVYGGVSIRKQIEALK-RGVDIVVATPGRLLDLIKRGKLDLSGVETLVLDEAD-RMLDMGFIDDIEKILK 200 (513)
T ss_pred HhhcCCccEEEEECCCCHHHHHHHHh-cCCCEEEECccHHHHHHHcCCcchhhcCEEEeccHh-hhhcCCCHHHHHHHHH
Confidence 4322 122222 222222222 358999999999999998775 89999999999999 4577777777666655
Q ss_pred ccCCCCcEEEeccCCCHH--HH-HhhhCCCCeeccCCcc-----cceeeEehhhHHHHhhhccCcccccccchhhhHHHH
Q 001817 442 PRRPELRLILMSATLNAE--LF-SSYFGGAPMLHIPGFT-----YPVRAYFLENILEMTRYRLNTYNQIDDYGQEKSWKM 513 (1009)
Q Consensus 442 ~~~~~lkvIlmSATl~~~--~~-~~yf~~~pvi~i~g~~-----~pv~~~yl~~i~~~~~~~~~~~~~i~~~~~~~~~~~ 513 (1009)
...++.|++++|||++.. .+ ..|+.++..+.+.... -.++.+|..
T Consensus 201 ~~p~~~qtllfSAT~~~~i~~l~~~~l~~p~~i~v~~~~~~~~~~~i~q~~~~--------------------------- 253 (513)
T COG0513 201 ALPPDRQTLLFSATMPDDIRELARRYLNDPVEIEVSVEKLERTLKKIKQFYLE--------------------------- 253 (513)
T ss_pred hCCcccEEEEEecCCCHHHHHHHHHHccCCcEEEEccccccccccCceEEEEE---------------------------
Confidence 555689999999999763 22 2333322222222000 001111100
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHhhhcchhhhhhhccccCCCCCcchhhHHHHHHHHHhhcCCCcEEEEcCCHhHHHHH
Q 001817 514 QKQALALRKRKSSIASAVEDALEAADFREYSVQTQQSLSCWNPDSIGFNLIEHVLCHIVKKERPGAVLVFMTGWDDINSL 593 (1009)
Q Consensus 514 ~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~~~~i~~l 593 (1009)
....+.+..++..++.....+++||||+++..++.+
T Consensus 254 --------------------------------------------v~~~~~k~~~L~~ll~~~~~~~~IVF~~tk~~~~~l 289 (513)
T COG0513 254 --------------------------------------------VESEEEKLELLLKLLKDEDEGRVIVFVRTKRLVEEL 289 (513)
T ss_pred --------------------------------------------eCCHHHHHHHHHHHHhcCCCCeEEEEeCcHHHHHHH
Confidence 000012445677777777777899999999999999
Q ss_pred HHHHHcCCCCCCCCCeEEEEecCCCCHHHHHhhcCCCCCCceEEEEecCccccccCCCCeeEEEeCCCCccccccCCCCC
Q 001817 594 KDQLQAHPLLGDPSRVLLLACHGSMASSEQRLIFDKPEDGVRKIVLATNMAETSITINDVVFVIDCGKAKETSYDALNNT 673 (1009)
Q Consensus 594 ~~~L~~~~~~~~~~~~~v~~lHs~l~~~er~~v~~~f~~G~~kVLVATniae~GIdIp~V~~VId~g~~k~~~yd~~~~~ 673 (1009)
+..|... ++.+..+||+|++++|..+++.|++|..+|||||++|++|||||+|.+|||+++|.
T Consensus 290 ~~~l~~~-------g~~~~~lhG~l~q~~R~~~l~~F~~g~~~vLVaTDvaaRGiDi~~v~~VinyD~p~---------- 352 (513)
T COG0513 290 AESLRKR-------GFKVAALHGDLPQEERDRALEKFKDGELRVLVATDVAARGLDIPDVSHVINYDLPL---------- 352 (513)
T ss_pred HHHHHHC-------CCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEEechhhccCCccccceeEEccCCC----------
Confidence 9999987 78899999999999999999999999999999999999999999999999977775
Q ss_pred CcccccccCHHhHHhhhcccCCCC-CCcEEEecchh
Q 001817 674 PCLLPSWISKAAARQRRGRAGRVQ-PGECYHLYPRY 708 (1009)
Q Consensus 674 ~~l~~~~iS~as~~QR~GRAGR~~-~G~c~~Lys~~ 708 (1009)
+...|+||+||+||.| .|.++.|+++.
T Consensus 353 --------~~e~yvHRiGRTgRaG~~G~ai~fv~~~ 380 (513)
T COG0513 353 --------DPEDYVHRIGRTGRAGRKGVAISFVTEE 380 (513)
T ss_pred --------CHHHheeccCccccCCCCCeEEEEeCcH
Confidence 6678889999999995 59999999863
No 29
>COG1204 Superfamily II helicase [General function prediction only]
Probab=100.00 E-value=1.4e-35 Score=361.52 Aligned_cols=427 Identities=22% Similarity=0.257 Sum_probs=290.3
Q ss_pred HHHHHHHHHHHHcCCeEEEEecCCCchhhhHHHHHHHHHHHHhcCCceEEEechhHHHHHHHHHHHHH--HHhCCcccce
Q 001817 300 YKERDALLKAISENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVA--AERGEKLGES 377 (1009)
Q Consensus 300 ~~~q~~il~~l~~~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~IvvtqPrR~La~qva~rva--~e~~~~~g~~ 377 (1009)
..||.++...+.+++|+|||+|||||||..+.+.++..+.+. +.++|+++|+|+||.+.++.+. +++|.+++..
T Consensus 34 ~~qq~av~~~~~~~~N~li~aPTgsGKTlIA~lai~~~l~~~----~~k~vYivPlkALa~Ek~~~~~~~~~~GirV~~~ 109 (766)
T COG1204 34 NPQQEAVEKGLLSDENVLISAPTGSGKTLIALLAILSTLLEG----GGKVVYIVPLKALAEEKYEEFSRLEELGIRVGIS 109 (766)
T ss_pred HHHHHHhhccccCCCcEEEEcCCCCchHHHHHHHHHHHHHhc----CCcEEEEeChHHHHHHHHHHhhhHHhcCCEEEEe
Confidence 356778888888889999999999999999999999887642 4578999999999999999998 5667777766
Q ss_pred ee-eeeeeccccCCCcEEEEEccHHHHHHHhcCC-CCCCccEEEEeCCCc-----CCCcchHHHHHHHHHcccCCCCcEE
Q 001817 378 VG-YKVRLEGMKGRDTRLMFCTTGILLRRLLVDR-SLRGVTHVIVDEIHE-----RGMNEDFLLIVLKELLPRRPELRLI 450 (1009)
Q Consensus 378 vG-y~vr~e~~~~~~t~Iiv~T~g~Ll~~L~~~~-~l~~is~IIIDEaHe-----R~~~~d~ll~llk~ll~~~~~lkvI 450 (1009)
+| |....+ .-..++|+|+||+.+-..+.+.+ ++..+++|||||+|- ||.-.+. ++.+....++.+|+|
T Consensus 110 TgD~~~~~~--~l~~~~ViVtT~EK~Dsl~R~~~~~~~~V~lvViDEiH~l~d~~RG~~lE~---iv~r~~~~~~~~riv 184 (766)
T COG1204 110 TGDYDLDDE--RLARYDVIVTTPEKLDSLTRKRPSWIEEVDLVVIDEIHLLGDRTRGPVLES---IVARMRRLNELIRIV 184 (766)
T ss_pred cCCcccchh--hhccCCEEEEchHHhhHhhhcCcchhhcccEEEEeeeeecCCcccCceehh---HHHHHHhhCcceEEE
Confidence 66 332222 23578999999999877777666 789999999999993 5555554 455555566679999
Q ss_pred EeccCC-CHHHHHhhhCCCCeeccCCcccceeeEehhhHHHHhhhccCccccccc-chhhhHHHHHHHHHHHHhhhhhHH
Q 001817 451 LMSATL-NAELFSSYFGGAPMLHIPGFTYPVRAYFLENILEMTRYRLNTYNQIDD-YGQEKSWKMQKQALALRKRKSSIA 528 (1009)
Q Consensus 451 lmSATl-~~~~~~~yf~~~pvi~i~g~~~pv~~~yl~~i~~~~~~~~~~~~~i~~-~~~~~~~~~~~~~~~~~~~~~~~~ 528 (1009)
++|||+ |.+.+++|++..++ .+..+|+..+--.- .. ..+.. .+..+.|
T Consensus 185 gLSATlpN~~evA~wL~a~~~---~~~~rp~~l~~~v~---------~~-~~~~~~~~~~k~~----------------- 234 (766)
T COG1204 185 GLSATLPNAEEVADWLNAKLV---ESDWRPVPLRRGVP---------YV-GAFLGADGKKKTW----------------- 234 (766)
T ss_pred EEeeecCCHHHHHHHhCCccc---ccCCCCcccccCCc---------cc-eEEEEecCccccc-----------------
Confidence 999999 99999999997665 22223332210000 00 00000 0000000
Q ss_pred HHHHHHHHHhhhcchhhhhhhccccCCCCCcchhhHHHHHHHHHhhcCCCcEEEEcCCHhHHHHHHHHHHcC--------
Q 001817 529 SAVEDALEAADFREYSVQTQQSLSCWNPDSIGFNLIEHVLCHIVKKERPGAVLVFMTGWDDINSLKDQLQAH-------- 600 (1009)
Q Consensus 529 ~~v~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~~~~i~~l~~~L~~~-------- 600 (1009)
+.. ..+....++...+ ...|++||||+++..+...+..+...
T Consensus 235 ---------------------------~~~-~~~~~~~~v~~~~--~~~~qvLvFv~sR~~a~~~A~~l~~~~~~~~~~~ 284 (766)
T COG1204 235 ---------------------------PLL-IDNLALELVLESL--AEGGQVLVFVHSRKEAEKTAKKLRIKMSATLSDD 284 (766)
T ss_pred ---------------------------ccc-chHHHHHHHHHHH--hcCCeEEEEEecCchHHHHHHHHHHHHhhcCChh
Confidence 000 0011111122222 25689999999999999998888730
Q ss_pred ----------CCCC-C-----------CCCeEEEEecCCCCHHHHHhhcCCCCCCceEEEEecCccccccCCCCeeEEEe
Q 001817 601 ----------PLLG-D-----------PSRVLLLACHGSMASSEQRLIFDKPEDGVRKIVLATNMAETSITINDVVFVID 658 (1009)
Q Consensus 601 ----------~~~~-~-----------~~~~~v~~lHs~l~~~er~~v~~~f~~G~~kVLVATniae~GIdIp~V~~VId 658 (1009)
+... . .-...+..||++|+.++|+.+++.|+.|.++||+||++++.|||.|.-.+||-
T Consensus 285 ~~~~~~~~a~~~~~~~~~~~~~~~l~e~v~~GvafHhAGL~~~~R~~vE~~Fr~g~ikVlv~TpTLA~GVNLPA~~VIIk 364 (766)
T COG1204 285 EKIVLDEGASPILIPETPTSEDEELAELVLRGVAFHHAGLPREDRQLVEDAFRKGKIKVLVSTPTLAAGVNLPARTVIIK 364 (766)
T ss_pred hhhhccccccccccccccccchHHHHHHHHhCccccccCCCHHHHHHHHHHHhcCCceEEEechHHhhhcCCcceEEEEe
Confidence 0010 0 01246889999999999999999999999999999999999999998888884
Q ss_pred CCCCccccccCCCCCCcccccccCHHhHHhhhcccCCCC---CCcEEEec-chhh---hhhhccCCCccccccCc-----
Q 001817 659 CGKAKETSYDALNNTPCLLPSWISKAAARQRRGRAGRVQ---PGECYHLY-PRYV---YDAFADYQLPELLRTPL----- 726 (1009)
Q Consensus 659 ~g~~k~~~yd~~~~~~~l~~~~iS~as~~QR~GRAGR~~---~G~c~~Ly-s~~~---~~~l~~~~~PEi~r~~L----- 726 (1009)
....||+..+ ...+++.++.||.|||||++ -|..+.+- +.+. +........||...+.|
T Consensus 365 ----~~~~y~~~~g-----~~~i~~~dv~QM~GRAGRPg~d~~G~~~i~~~~~~~~~~~~~~~~~~~~e~~~s~l~~~~~ 435 (766)
T COG1204 365 ----DTRRYDPKGG-----IVDIPVLDVLQMAGRAGRPGYDDYGEAIILATSHDELEYLAELYIQSEPEPIESKLGDELN 435 (766)
T ss_pred ----eeEEEcCCCC-----eEECchhhHhhccCcCCCCCcCCCCcEEEEecCccchhHHHHHhhccCcchHHHhhccccc
Confidence 3344777333 35679999999999999995 36555554 3322 22334455566522222
Q ss_pred -hhhhhHhhhcCc----CCHHHHHHhhcCCCC-------hhhHHHHHHHHHHhc-cccCCC---CcChhhhhcccCCCCh
Q 001817 727 -QSLCLQIKSLQL----GSISEFLSRALQPPE-------PLSVKNAIEYLQIIG-ALDENE---NLTVLGRNLSMLPVEP 790 (1009)
Q Consensus 727 -~~~~L~lk~l~~----~~~~~fl~~~l~pP~-------~~~v~~al~~L~~lg-ald~~~---~lT~lG~~ls~lpl~p 790 (1009)
...++.+.+.+. .....|+..++-.|. ...+..+++.|.+.+ +++... ..|.+|+.++++.++|
T Consensus 436 ~~~~l~~v~~~~~~v~~~~~~~f~~~t~~~~~~~~~~~~~~~i~~~~~~L~~~~~~~~~~~~~~~ate~g~~~s~~yi~~ 515 (766)
T COG1204 436 LRTFLLGVISVGDAVSWLELTDFYERTFYNPQTYGEGMLREEILASLRYLEENGLILDADWEALHATELGKLVSRLYIDP 515 (766)
T ss_pred chheEEEEEeccchhhHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHHHhccceeeccccccchhHHHHHhhhccCCH
Confidence 222222222221 234455555554444 346788899999886 665543 5899999999999999
Q ss_pred hHHHHHHHhhhhCC
Q 001817 791 KLGKMLILGAIFNC 804 (1009)
Q Consensus 791 ~~~k~ll~~~~~~c 804 (1009)
..++.+......--
T Consensus 516 ~sa~~~~~~l~~~~ 529 (766)
T COG1204 516 ESAKIFRDLLAELA 529 (766)
T ss_pred HHHHHHHHHHHHhc
Confidence 99999887654433
No 30
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=100.00 E-value=9.8e-36 Score=366.81 Aligned_cols=340 Identities=18% Similarity=0.172 Sum_probs=226.2
Q ss_pred HHHHhhcCCCCHHHHHHHHHHHHcCCeEEEEecCCCchhhhHHHHHHHHHHHHhcCCceEEEechhHHHHHHHHHHHHHH
Q 001817 289 KMLEFRRSLPSYKERDALLKAISENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAA 368 (1009)
Q Consensus 289 ~l~~~r~~LPi~~~q~~il~~l~~~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~IvvtqPrR~La~qva~rva~ 368 (1009)
+.++....-..+.+|.+.++.+.+++++++++|||||||.++.+++++.+.. +...+++++.|||+||.|+.+++.+
T Consensus 27 ~~L~~~g~~~p~~~Q~~ai~~il~G~nvvv~apTGSGKTla~~LPiL~~l~~---~~~~~aL~l~PtraLa~q~~~~l~~ 103 (742)
T TIGR03817 27 AALEAAGIHRPWQHQARAAELAHAGRHVVVATGTASGKSLAYQLPVLSALAD---DPRATALYLAPTKALAADQLRAVRE 103 (742)
T ss_pred HHHHHcCCCcCCHHHHHHHHHHHCCCCEEEECCCCCcHHHHHHHHHHHHHhh---CCCcEEEEEcChHHHHHHHHHHHHH
Confidence 3444444334566677777888999999999999999999999999998764 2356788888999999999999876
Q ss_pred Hh--CCcccceeeeeeeec-cccCCCcEEEEEccHHHHHHHhcCC-----CCCCccEEEEeCCCcC-CCcch---HHHHH
Q 001817 369 ER--GEKLGESVGYKVRLE-GMKGRDTRLMFCTTGILLRRLLVDR-----SLRGVTHVIVDEIHER-GMNED---FLLIV 436 (1009)
Q Consensus 369 e~--~~~~g~~vGy~vr~e-~~~~~~t~Iiv~T~g~Ll~~L~~~~-----~l~~is~IIIDEaHeR-~~~~d---~ll~l 436 (1009)
.. +..++...|-....+ .....+++|+++||++|...+.... .++++++|||||||.. +.... .++..
T Consensus 104 l~~~~i~v~~~~Gdt~~~~r~~i~~~~~IivtTPd~L~~~~L~~~~~~~~~l~~l~~vViDEah~~~g~fg~~~~~il~r 183 (742)
T TIGR03817 104 LTLRGVRPATYDGDTPTEERRWAREHARYVLTNPDMLHRGILPSHARWARFLRRLRYVVIDECHSYRGVFGSHVALVLRR 183 (742)
T ss_pred hccCCeEEEEEeCCCCHHHHHHHhcCCCEEEEChHHHHHhhccchhHHHHHHhcCCEEEEeChhhccCccHHHHHHHHHH
Confidence 53 111111122111000 1112457999999999976554321 4889999999999962 22112 22333
Q ss_pred HHHHcc-cCCCCcEEEeccCC-CHHHHHhhhCCCCeeccCCcccce---eeEehhhHHHHhhhccCcccccccchhhhHH
Q 001817 437 LKELLP-RRPELRLILMSATL-NAELFSSYFGGAPMLHIPGFTYPV---RAYFLENILEMTRYRLNTYNQIDDYGQEKSW 511 (1009)
Q Consensus 437 lk~ll~-~~~~lkvIlmSATl-~~~~~~~yf~~~pvi~i~g~~~pv---~~~yl~~i~~~~~~~~~~~~~i~~~~~~~~~ 511 (1009)
++.+.. ...+.|+|++|||+ |+..+.+++.+.|+..+....-|. ...+.... .. ......
T Consensus 184 L~ri~~~~g~~~q~i~~SATi~n~~~~~~~l~g~~~~~i~~~~~~~~~~~~~~~~p~------------~~-~~~~~~-- 248 (742)
T TIGR03817 184 LRRLCARYGASPVFVLASATTADPAAAASRLIGAPVVAVTEDGSPRGARTVALWEPP------------LT-ELTGEN-- 248 (742)
T ss_pred HHHHHHhcCCCCEEEEEecCCCCHHHHHHHHcCCCeEEECCCCCCcCceEEEEecCC------------cc-cccccc--
Confidence 333332 23467999999999 666666666555554443222111 11111100 00 000000
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHhhhcchhhhhhhccccCCCCCcchhhHHHHHHHHHhhcCCCcEEEEcCCHhHHH
Q 001817 512 KMQKQALALRKRKSSIASAVEDALEAADFREYSVQTQQSLSCWNPDSIGFNLIEHVLCHIVKKERPGAVLVFMTGWDDIN 591 (1009)
Q Consensus 512 ~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~~~~i~ 591 (1009)
... ...........++..+... ..++||||++++.++
T Consensus 249 ------------~~~-----------------------------~r~~~~~~~~~~l~~l~~~--~~~~IVF~~sr~~ae 285 (742)
T TIGR03817 249 ------------GAP-----------------------------VRRSASAEAADLLADLVAE--GARTLTFVRSRRGAE 285 (742)
T ss_pred ------------ccc-----------------------------cccchHHHHHHHHHHHHHC--CCCEEEEcCCHHHHH
Confidence 000 0000001122334444442 479999999999999
Q ss_pred HHHHHHHcCCC-CCCCCCeEEEEecCCCCHHHHHhhcCCCCCCceEEEEecCccccccCCCCeeEEEeCCCCccccccCC
Q 001817 592 SLKDQLQAHPL-LGDPSRVLLLACHGSMASSEQRLIFDKPEDGVRKIVLATNMAETSITINDVVFVIDCGKAKETSYDAL 670 (1009)
Q Consensus 592 ~l~~~L~~~~~-~~~~~~~~v~~lHs~l~~~er~~v~~~f~~G~~kVLVATniae~GIdIp~V~~VId~g~~k~~~yd~~ 670 (1009)
.++..|..... .....+..+..+||++++++|+++++.|++|++++||||+++|+|||||++++||++|.|.
T Consensus 286 ~l~~~l~~~l~~~~~~l~~~v~~~hgg~~~~eR~~ie~~f~~G~i~vLVaTd~lerGIDI~~vd~VI~~~~P~------- 358 (742)
T TIGR03817 286 LVAAIARRLLGEVDPDLAERVAAYRAGYLPEDRRELERALRDGELLGVATTNALELGVDISGLDAVVIAGFPG------- 358 (742)
T ss_pred HHHHHHHHHHHhhccccccchhheecCCCHHHHHHHHHHHHcCCceEEEECchHhccCCcccccEEEEeCCCC-------
Confidence 99998865310 0111135688999999999999999999999999999999999999999999999999887
Q ss_pred CCCCcccccccCHHhHHhhhcccCCCC-CCcEEEecch
Q 001817 671 NNTPCLLPSWISKAAARQRRGRAGRVQ-PGECYHLYPR 707 (1009)
Q Consensus 671 ~~~~~l~~~~iS~as~~QR~GRAGR~~-~G~c~~Lys~ 707 (1009)
|.++|+||+|||||.+ .|.++.+.+.
T Consensus 359 -----------s~~~y~qRiGRaGR~G~~g~ai~v~~~ 385 (742)
T TIGR03817 359 -----------TRASLWQQAGRAGRRGQGALVVLVARD 385 (742)
T ss_pred -----------CHHHHHHhccccCCCCCCcEEEEEeCC
Confidence 8889999999999995 4999988763
No 31
>PTZ00424 helicase 45; Provisional
Probab=100.00 E-value=3.6e-35 Score=342.08 Aligned_cols=318 Identities=17% Similarity=0.270 Sum_probs=219.7
Q ss_pred cCCCCHHHHHHHHHHHHcCCeEEEEecCCCchhhhHHHHHHHHHHHHhcCCceEEEechhHHHHHHHHHHHHHHHhC---
Q 001817 295 RSLPSYKERDALLKAISENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERG--- 371 (1009)
Q Consensus 295 ~~LPi~~~q~~il~~l~~~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~IvvtqPrR~La~qva~rva~e~~--- 371 (1009)
..-|...|+++ +..+.++++++++||||||||+++.+++++.+.. ....+++++++|+++||.|+.+.+.....
T Consensus 48 ~~~~~~~Q~~a-i~~i~~~~d~ii~apTGsGKT~~~~l~~l~~~~~--~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~ 124 (401)
T PTZ00424 48 FEKPSAIQQRG-IKPILDGYDTIGQAQSGTGKTATFVIAALQLIDY--DLNACQALILAPTRELAQQIQKVVLALGDYLK 124 (401)
T ss_pred CCCCCHHHHHH-HHHHhCCCCEEEECCCCChHHHHHHHHHHHHhcC--CCCCceEEEECCCHHHHHHHHHHHHHHhhhcC
Confidence 34566666555 5557788999999999999999999998876532 22356788888999999999887755432
Q ss_pred Ccccceeeeeeeec--cccCCCcEEEEEccHHHHHHHhcCC-CCCCccEEEEeCCCcCCCcchHHHHHHHHHcccCCCCc
Q 001817 372 EKLGESVGYKVRLE--GMKGRDTRLMFCTTGILLRRLLVDR-SLRGVTHVIVDEIHERGMNEDFLLIVLKELLPRRPELR 448 (1009)
Q Consensus 372 ~~~g~~vGy~vr~e--~~~~~~t~Iiv~T~g~Ll~~L~~~~-~l~~is~IIIDEaHeR~~~~d~ll~llk~ll~~~~~lk 448 (1009)
..++..+|-....+ .....+++|+|+||+.|.+.+.... .++++++|||||||+. ....+...+.+.+....++.|
T Consensus 125 ~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~l~~i~lvViDEah~~-~~~~~~~~~~~i~~~~~~~~~ 203 (401)
T PTZ00424 125 VRCHACVGGTVVRDDINKLKAGVHMVVGTPGRVYDMIDKRHLRVDDLKLFILDEADEM-LSRGFKGQIYDVFKKLPPDVQ 203 (401)
T ss_pred ceEEEEECCcCHHHHHHHHcCCCCEEEECcHHHHHHHHhCCcccccccEEEEecHHHH-HhcchHHHHHHHHhhCCCCcE
Confidence 11122222111000 1112457899999999999887665 7899999999999952 222232222333333457889
Q ss_pred EEEeccCCCHHH--HH-hhhCCCCeeccCCcccc---eeeEehhhHHHHhhhccCcccccccchhhhHHHHHHHHHHHHh
Q 001817 449 LILMSATLNAEL--FS-SYFGGAPMLHIPGFTYP---VRAYFLENILEMTRYRLNTYNQIDDYGQEKSWKMQKQALALRK 522 (1009)
Q Consensus 449 vIlmSATl~~~~--~~-~yf~~~pvi~i~g~~~p---v~~~yl~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 522 (1009)
+|++|||++.+. +. .|+.....+.+...... +..++.. . .
T Consensus 204 ~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~----~--------------- 249 (401)
T PTZ00424 204 VALFSATMPNEILELTTKFMRDPKRILVKKDELTLEGIRQFYVA---------------V----E--------------- 249 (401)
T ss_pred EEEEEecCCHHHHHHHHHHcCCCEEEEeCCCCcccCCceEEEEe---------------c----C---------------
Confidence 999999996542 22 23322111111110000 0000000 0 0
Q ss_pred hhhhHHHHHHHHHHHhhhcchhhhhhhccccCCCCCcchhhHHHHHHHHHhhcCCCcEEEEcCCHhHHHHHHHHHHcCCC
Q 001817 523 RKSSIASAVEDALEAADFREYSVQTQQSLSCWNPDSIGFNLIEHVLCHIVKKERPGAVLVFMTGWDDINSLKDQLQAHPL 602 (1009)
Q Consensus 523 ~~~~~~~~v~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~~~~i~~l~~~L~~~~~ 602 (1009)
..+.....+..+.......++||||+++++++.+++.|...
T Consensus 250 -------------------------------------~~~~~~~~l~~~~~~~~~~~~ivF~~t~~~~~~l~~~l~~~-- 290 (401)
T PTZ00424 250 -------------------------------------KEEWKFDTLCDLYETLTITQAIIYCNTRRKVDYLTKKMHER-- 290 (401)
T ss_pred -------------------------------------hHHHHHHHHHHHHHhcCCCeEEEEecCcHHHHHHHHHHHHC--
Confidence 00001112333334445578999999999999999999875
Q ss_pred CCCCCCeEEEEecCCCCHHHHHhhcCCCCCCceEEEEecCccccccCCCCeeEEEeCCCCccccccCCCCCCcccccccC
Q 001817 603 LGDPSRVLLLACHGSMASSEQRLIFDKPEDGVRKIVLATNMAETSITINDVVFVIDCGKAKETSYDALNNTPCLLPSWIS 682 (1009)
Q Consensus 603 ~~~~~~~~v~~lHs~l~~~er~~v~~~f~~G~~kVLVATniae~GIdIp~V~~VId~g~~k~~~yd~~~~~~~l~~~~iS 682 (1009)
++.+..+||+|+.++|+.+++.|++|+++|||||+++++|||+|++++||++|.|. |
T Consensus 291 -----~~~~~~~h~~~~~~~R~~i~~~f~~g~~~vLvaT~~l~~GiDip~v~~VI~~~~p~------------------s 347 (401)
T PTZ00424 291 -----DFTVSCMHGDMDQKDRDLIMREFRSGSTRVLITTDLLARGIDVQQVSLVINYDLPA------------------S 347 (401)
T ss_pred -----CCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEcccccCCcCcccCCEEEEECCCC------------------C
Confidence 56799999999999999999999999999999999999999999999999988775 7
Q ss_pred HHhHHhhhcccCCCC-CCcEEEecchhhhhh
Q 001817 683 KAAARQRRGRAGRVQ-PGECYHLYPRYVYDA 712 (1009)
Q Consensus 683 ~as~~QR~GRAGR~~-~G~c~~Lys~~~~~~ 712 (1009)
..+|.||+|||||.+ .|.|+.|++++..+.
T Consensus 348 ~~~y~qr~GRagR~g~~G~~i~l~~~~~~~~ 378 (401)
T PTZ00424 348 PENYIHRIGRSGRFGRKGVAINFVTPDDIEQ 378 (401)
T ss_pred HHHEeecccccccCCCCceEEEEEcHHHHHH
Confidence 889999999999985 699999999876543
No 32
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=6e-36 Score=329.39 Aligned_cols=338 Identities=21% Similarity=0.262 Sum_probs=243.3
Q ss_pred HHHhcChhhHHHHHhh----cCCCCHHHHHHHHHHHHcCCeEEEEecCCCchhhhHHHHHHHHHHHHhcC-CceEEEech
Q 001817 279 QAWQESPEGQKMLEFR----RSLPSYKERDALLKAISENQVVVVSGETGCGKTTQLPQYILESETEAARG-AACSIICTQ 353 (1009)
Q Consensus 279 ~~~~~~~~~~~l~~~r----~~LPi~~~q~~il~~l~~~~~vII~apTGSGKTt~~~~~ile~~~~~~~~-~~~~Ivvtq 353 (1009)
.++++++.-+.+++.- ..-|...|+..|.-++ -+++++.||.||||||.++.+++|+.++-...+ ...+|+|++
T Consensus 181 ~sF~~mNLSRPlLka~~~lGy~~PTpIQ~a~IPval-lgkDIca~A~TGsGKTAAF~lPiLERLlYrPk~~~~TRVLVL~ 259 (691)
T KOG0338|consen 181 ESFQSMNLSRPLLKACSTLGYKKPTPIQVATIPVAL-LGKDICACAATGSGKTAAFALPILERLLYRPKKVAATRVLVLV 259 (691)
T ss_pred hhHHhcccchHHHHHHHhcCCCCCCchhhhcccHHh-hcchhhheecccCCchhhhHHHHHHHHhcCcccCcceeEEEEe
Confidence 3455555545555544 4458888877777665 788999999999999999999999999865433 345788888
Q ss_pred hHHHHHHHHHHH---HHHHhCCcccceee-eeeee-ccccCCCcEEEEEccHHHHHHHhcCC--CCCCccEEEEeCCCcC
Q 001817 354 PRRISAMAVSER---VAAERGEKLGESVG-YKVRL-EGMKGRDTRLMFCTTGILLRRLLVDR--SLRGVTHVIVDEIHER 426 (1009)
Q Consensus 354 PrR~La~qva~r---va~e~~~~~g~~vG-y~vr~-e~~~~~~t~Iiv~T~g~Ll~~L~~~~--~l~~is~IIIDEaHeR 426 (1009)
|||+||+|++.. ++++....+|..|| ..++. +......++|+|+|||+|.+.|.+.+ .++++.++|+|||+ |
T Consensus 260 PTRELaiQv~sV~~qlaqFt~I~~~L~vGGL~lk~QE~~LRs~PDIVIATPGRlIDHlrNs~sf~ldsiEVLvlDEAD-R 338 (691)
T KOG0338|consen 260 PTRELAIQVHSVTKQLAQFTDITVGLAVGGLDLKAQEAVLRSRPDIVIATPGRLIDHLRNSPSFNLDSIEVLVLDEAD-R 338 (691)
T ss_pred ccHHHHHHHHHHHHHHHhhccceeeeeecCccHHHHHHHHhhCCCEEEecchhHHHHhccCCCccccceeEEEechHH-H
Confidence 999999998764 44455666666665 22221 22233578999999999999999988 78999999999999 6
Q ss_pred CCcchHHHHHHHHHcccCC-CCcEEEeccCCCHH--HHHhhhCCCCeeccCCcccceeeEehhhHHHHhhhccCcccccc
Q 001817 427 GMNEDFLLIVLKELLPRRP-ELRLILMSATLNAE--LFSSYFGGAPMLHIPGFTYPVRAYFLENILEMTRYRLNTYNQID 503 (1009)
Q Consensus 427 ~~~~d~ll~llk~ll~~~~-~lkvIlmSATl~~~--~~~~yf~~~pvi~i~g~~~pv~~~yl~~i~~~~~~~~~~~~~i~ 503 (1009)
.+...|... ++.++..+| +.|.+++|||++.+ .+.+.-- .-||.++.-+.
T Consensus 339 MLeegFade-mnEii~lcpk~RQTmLFSATMteeVkdL~slSL----------~kPvrifvd~~---------------- 391 (691)
T KOG0338|consen 339 MLEEGFADE-MNEIIRLCPKNRQTMLFSATMTEEVKDLASLSL----------NKPVRIFVDPN---------------- 391 (691)
T ss_pred HHHHHHHHH-HHHHHHhccccccceeehhhhHHHHHHHHHhhc----------CCCeEEEeCCc----------------
Confidence 565555444 555555554 67899999999543 3333211 13444432111
Q ss_pred cchhhhHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhcchhhhhhhccccCCCCCcchhhHHHHHHHHHhhcCCCcEEEE
Q 001817 504 DYGQEKSWKMQKQALALRKRKSSIASAVEDALEAADFREYSVQTQQSLSCWNPDSIGFNLIEHVLCHIVKKERPGAVLVF 583 (1009)
Q Consensus 504 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVF 583 (1009)
......+.+.+.... +.. -.+...++..++...-...++||
T Consensus 392 ---------------------~~~a~~LtQEFiRIR----------------~~r--e~dRea~l~~l~~rtf~~~~ivF 432 (691)
T KOG0338|consen 392 ---------------------KDTAPKLTQEFIRIR----------------PKR--EGDREAMLASLITRTFQDRTIVF 432 (691)
T ss_pred ---------------------cccchhhhHHHheec----------------ccc--ccccHHHHHHHHHHhcccceEEE
Confidence 000011111111110 000 01122345555555556789999
Q ss_pred cCCHhHHHHHHHHHHcCCCCCCCCCeEEEEecCCCCHHHHHhhcCCCCCCceEEEEecCccccccCCCCeeEEEeCCCCc
Q 001817 584 MTGWDDINSLKDQLQAHPLLGDPSRVLLLACHGSMASSEQRLIFDKPEDGVRKIVLATNMAETSITINDVVFVIDCGKAK 663 (1009)
Q Consensus 584 l~~~~~i~~l~~~L~~~~~~~~~~~~~v~~lHs~l~~~er~~v~~~f~~G~~kVLVATniae~GIdIp~V~~VId~g~~k 663 (1009)
+.+++.+.++.-.|--. ++.+.-+||+|++.+|-..++.|+.+++.|||||++|++|+||++|..|||+..|+
T Consensus 433 v~tKk~AHRl~IllGLl-------gl~agElHGsLtQ~QRlesL~kFk~~eidvLiaTDvAsRGLDI~gV~tVINy~mP~ 505 (691)
T KOG0338|consen 433 VRTKKQAHRLRILLGLL-------GLKAGELHGSLTQEQRLESLEKFKKEEIDVLIATDVASRGLDIEGVQTVINYAMPK 505 (691)
T ss_pred EehHHHHHHHHHHHHHh-------hchhhhhcccccHHHHHHHHHHHHhccCCEEEEechhhccCCccceeEEEeccCch
Confidence 99999999988777654 67789999999999999999999999999999999999999999999999988887
Q ss_pred cccccCCCCCCcccccccCHHhHHhhhcccCCCC-CCcEEEecchhh
Q 001817 664 ETSYDALNNTPCLLPSWISKAAARQRRGRAGRVQ-PGECYHLYPRYV 709 (1009)
Q Consensus 664 ~~~yd~~~~~~~l~~~~iS~as~~QR~GRAGR~~-~G~c~~Lys~~~ 709 (1009)
+...|+||.||+.|.| .|..+.|..+..
T Consensus 506 ------------------t~e~Y~HRVGRTARAGRaGrsVtlvgE~d 534 (691)
T KOG0338|consen 506 ------------------TIEHYLHRVGRTARAGRAGRSVTLVGESD 534 (691)
T ss_pred ------------------hHHHHHHHhhhhhhcccCcceEEEecccc
Confidence 7789999999999995 599999987764
No 33
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=100.00 E-value=3.1e-35 Score=325.20 Aligned_cols=336 Identities=22% Similarity=0.231 Sum_probs=245.9
Q ss_pred HHHHhcChhhHHHH----HhhcCCCCHHHHHHHHHHHHcCCeEEEEecCCCchhhhHHHHHHHHHHHHh-------cCCc
Q 001817 278 QQAWQESPEGQKML----EFRRSLPSYKERDALLKAISENQVVVVSGETGCGKTTQLPQYILESETEAA-------RGAA 346 (1009)
Q Consensus 278 ~~~~~~~~~~~~l~----~~r~~LPi~~~q~~il~~l~~~~~vII~apTGSGKTt~~~~~ile~~~~~~-------~~~~ 346 (1009)
..+|.+++-..+++ .-+...|...|+.+|. ...+++++|..|+||||||.+++++++..+.... .-.+
T Consensus 244 lrnwEE~~~P~e~l~~I~~~~y~eptpIqR~aip-l~lQ~rD~igvaETgsGktaaf~ipLl~~IsslP~~~~~en~~~g 322 (673)
T KOG0333|consen 244 LRNWEESGFPLELLSVIKKPGYKEPTPIQRQAIP-LGLQNRDPIGVAETGSGKTAAFLIPLLIWISSLPPMARLENNIEG 322 (673)
T ss_pred ccChhhcCCCHHHHHHHHhcCCCCCchHHHhhcc-chhccCCeeeEEeccCCccccchhhHHHHHHcCCCcchhhhcccC
Confidence 45687766544444 4456689999888776 5668899999999999999999999987664221 2234
Q ss_pred eEEEechhHHHHHHHHHHHHHHH---hCCcccceeeeeeeecc--ccCCCcEEEEEccHHHHHHHhcCC-CCCCccEEEE
Q 001817 347 CSIICTQPRRISAMAVSERVAAE---RGEKLGESVGYKVRLEG--MKGRDTRLMFCTTGILLRRLLVDR-SLRGVTHVIV 420 (1009)
Q Consensus 347 ~~IvvtqPrR~La~qva~rva~e---~~~~~g~~vGy~vr~e~--~~~~~t~Iiv~T~g~Ll~~L~~~~-~l~~is~III 420 (1009)
+..++++|||+||.|+.+.-.+. +|..+-..||-....+. ..+..|.|+++|||.|++.|.+.- .++...+||+
T Consensus 323 pyaiilaptReLaqqIeeEt~kf~~~lg~r~vsvigg~s~EEq~fqls~gceiviatPgrLid~Lenr~lvl~qctyvvl 402 (673)
T KOG0333|consen 323 PYAIILAPTRELAQQIEEETNKFGKPLGIRTVSVIGGLSFEEQGFQLSMGCEIVIATPGRLIDSLENRYLVLNQCTYVVL 402 (673)
T ss_pred ceeeeechHHHHHHHHHHHHHHhcccccceEEEEecccchhhhhhhhhccceeeecCchHHHHHHHHHHHHhccCceEec
Confidence 56777889999999997755332 34444445553333333 345789999999999999886654 6889999999
Q ss_pred eCCCcCCCcchHHHHHHHHHcccC-----C--------------------CCcEEEeccCCCH--H-HHHhhhCCCCeec
Q 001817 421 DEIHERGMNEDFLLIVLKELLPRR-----P--------------------ELRLILMSATLNA--E-LFSSYFGGAPMLH 472 (1009)
Q Consensus 421 DEaHeR~~~~d~ll~llk~ll~~~-----~--------------------~lkvIlmSATl~~--~-~~~~yf~~~pvi~ 472 (1009)
|||+ |.++..|-..+.+.+-... | -.+.+.+|||+++ + ....||..+-++.
T Consensus 403 dead-rmiDmgfE~dv~~iL~~mPssn~k~~tde~~~~~~~~~~~~~~k~yrqT~mftatm~p~verlar~ylr~pv~vt 481 (673)
T KOG0333|consen 403 DEAD-RMIDMGFEPDVQKILEQMPSSNAKPDTDEKEGEERVRKNFSSSKKYRQTVMFTATMPPAVERLARSYLRRPVVVT 481 (673)
T ss_pred cchh-hhhcccccHHHHHHHHhCCccccCCCccchhhHHHHHhhcccccceeEEEEEecCCChHHHHHHHHHhhCCeEEE
Confidence 9999 4466655545444442211 1 1578999999954 3 4456887655555
Q ss_pred cCCcccceeeEehhhHHHHhhhccCcccccccchhhhHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhcchhhhhhhccc
Q 001817 473 IPGFTYPVRAYFLENILEMTRYRLNTYNQIDDYGQEKSWKMQKQALALRKRKSSIASAVEDALEAADFREYSVQTQQSLS 552 (1009)
Q Consensus 473 i~g~~~pv~~~yl~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~l~ 552 (1009)
|..-.-|.... ++.+.
T Consensus 482 ig~~gk~~~rv------------------------------------------------eQ~v~---------------- 497 (673)
T KOG0333|consen 482 IGSAGKPTPRV------------------------------------------------EQKVE---------------- 497 (673)
T ss_pred eccCCCCccch------------------------------------------------heEEE----------------
Confidence 43222211100 00000
Q ss_pred cCCCCCcchhhHHHHHHHHHhhcCCCcEEEEcCCHhHHHHHHHHHHcCCCCCCCCCeEEEEecCCCCHHHHHhhcCCCCC
Q 001817 553 CWNPDSIGFNLIEHVLCHIVKKERPGAVLVFMTGWDDINSLKDQLQAHPLLGDPSRVLLLACHGSMASSEQRLIFDKPED 632 (1009)
Q Consensus 553 ~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~~~~i~~l~~~L~~~~~~~~~~~~~v~~lHs~l~~~er~~v~~~f~~ 632 (1009)
.+..+....-|..++.+....++|||+++++.|+.+++.|.+. ++.+..|||+-++++|+.+++.|+.
T Consensus 498 -----m~~ed~k~kkL~eil~~~~~ppiIIFvN~kk~~d~lAk~LeK~-------g~~~~tlHg~k~qeQRe~aL~~fr~ 565 (673)
T KOG0333|consen 498 -----MVSEDEKRKKLIEILESNFDPPIIIFVNTKKGADALAKILEKA-------GYKVTTLHGGKSQEQRENALADFRE 565 (673)
T ss_pred -----EecchHHHHHHHHHHHhCCCCCEEEEEechhhHHHHHHHHhhc-------cceEEEeeCCccHHHHHHHHHHHHh
Confidence 0000111223455556556789999999999999999999987 7889999999999999999999999
Q ss_pred CceEEEEecCccccccCCCCeeEEEeCCCCccccccCCCCCCcccccccCHHhHHhhhcccCCCCC-CcEEEecchhh
Q 001817 633 GVRKIVLATNMAETSITINDVVFVIDCGKAKETSYDALNNTPCLLPSWISKAAARQRRGRAGRVQP-GECYHLYPRYV 709 (1009)
Q Consensus 633 G~~kVLVATniae~GIdIp~V~~VId~g~~k~~~yd~~~~~~~l~~~~iS~as~~QR~GRAGR~~~-G~c~~Lys~~~ 709 (1009)
|...|+||||+|++|||||+|.+|||++++| |...|.||+||+||.|. |.++.|++++.
T Consensus 566 ~t~dIlVaTDvAgRGIDIpnVSlVinydmak------------------sieDYtHRIGRTgRAGk~GtaiSflt~~d 625 (673)
T KOG0333|consen 566 GTGDILVATDVAGRGIDIPNVSLVINYDMAK------------------SIEDYTHRIGRTGRAGKSGTAISFLTPAD 625 (673)
T ss_pred cCCCEEEEecccccCCCCCccceeeecchhh------------------hHHHHHHHhccccccccCceeEEEeccch
Confidence 9999999999999999999999999999888 88899999999999965 99999999876
No 34
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=100.00 E-value=1.9e-34 Score=321.22 Aligned_cols=455 Identities=22% Similarity=0.263 Sum_probs=310.3
Q ss_pred ChhhHHHHHhhcC---CCCHHHHHHHHHHHHcCCeEEEEecCCCchhhhHHHHHHHHHHHHhcCCceEEEechhHHHHHH
Q 001817 284 SPEGQKMLEFRRS---LPSYKERDALLKAISENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAM 360 (1009)
Q Consensus 284 ~~~~~~l~~~r~~---LPi~~~q~~il~~l~~~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~IvvtqPrR~La~ 360 (1009)
.+.++.+++.+.. ||+ |--++-..+.++++.+|+.+|+||||+...+.=+..++. .+.+.++++|..+||+
T Consensus 202 pe~fk~~lk~~G~~eLlPV--Q~laVe~GLLeG~nllVVSaTasGKTLIgElAGi~~~l~----~g~KmlfLvPLVALAN 275 (830)
T COG1202 202 PEKFKRMLKREGIEELLPV--QVLAVEAGLLEGENLLVVSATASGKTLIGELAGIPRLLS----GGKKMLFLVPLVALAN 275 (830)
T ss_pred cHHHHHHHHhcCcceecch--hhhhhhhccccCCceEEEeccCCCcchHHHhhCcHHHHh----CCCeEEEEehhHHhhc
Confidence 3455667776633 455 445666778899999999999999999988887776654 3457888889999999
Q ss_pred HHHHHHHHHh---CCcccceeee---eeeec---cccCCCcEEEEEccHHHHHHHhcCCCCCCccEEEEeCCC-----cC
Q 001817 361 AVSERVAAER---GEKLGESVGY---KVRLE---GMKGRDTRLMFCTTGILLRRLLVDRSLRGVTHVIVDEIH-----ER 426 (1009)
Q Consensus 361 qva~rva~e~---~~~~g~~vGy---~vr~e---~~~~~~t~Iiv~T~g~Ll~~L~~~~~l~~is~IIIDEaH-----eR 426 (1009)
|-++.+.... |..+...||. ..+.+ ...+.+++|+|+|.+-+--.|.....+.+++.|||||+| ||
T Consensus 276 QKy~dF~~rYs~LglkvairVG~srIk~~~~pv~~~t~~dADIIVGTYEGiD~lLRtg~~lgdiGtVVIDEiHtL~deER 355 (830)
T COG1202 276 QKYEDFKERYSKLGLKVAIRVGMSRIKTREEPVVVDTSPDADIIVGTYEGIDYLLRTGKDLGDIGTVVIDEIHTLEDEER 355 (830)
T ss_pred chHHHHHHHhhcccceEEEEechhhhcccCCccccCCCCCCcEEEeechhHHHHHHcCCcccccceEEeeeeeeccchhc
Confidence 9999997765 3333334442 11111 223467899999998776666666799999999999999 68
Q ss_pred CCcchHHHHHHHHHcccCCCCcEEEeccCC-CHHHHHhhhCCCCeeccCCcccceeeEehhhHHHHhhhccCcccccccc
Q 001817 427 GMNEDFLLIVLKELLPRRPELRLILMSATL-NAELFSSYFGGAPMLHIPGFTYPVRAYFLENILEMTRYRLNTYNQIDDY 505 (1009)
Q Consensus 427 ~~~~d~ll~llk~ll~~~~~lkvIlmSATl-~~~~~~~yf~~~pvi~i~g~~~pv~~~yl~~i~~~~~~~~~~~~~i~~~ 505 (1009)
|...|-+.+.++.+ .|+.|+|.+|||+ |++.++++|+. ..+...+|..|++.+..-. .
T Consensus 356 G~RLdGLI~RLr~l---~~~AQ~i~LSATVgNp~elA~~l~a-~lV~y~~RPVplErHlvf~-----------------~ 414 (830)
T COG1202 356 GPRLDGLIGRLRYL---FPGAQFIYLSATVGNPEELAKKLGA-KLVLYDERPVPLERHLVFA-----------------R 414 (830)
T ss_pred ccchhhHHHHHHHh---CCCCeEEEEEeecCChHHHHHHhCC-eeEeecCCCCChhHeeeee-----------------c
Confidence 88888776666665 5689999999999 99999999974 4445566766665543210 0
Q ss_pred hhhhHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhcchhhhhhhccccCCCCCcchhhHHHHHHHHHhhcCCCcEEEEcC
Q 001817 506 GQEKSWKMQKQALALRKRKSSIASAVEDALEAADFREYSVQTQQSLSCWNPDSIGFNLIEHVLCHIVKKERPGAVLVFMT 585 (1009)
Q Consensus 506 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~ 585 (1009)
+....|+ -+...++..+. ...+..-.|++|||.+
T Consensus 415 ~e~eK~~-------------ii~~L~k~E~~---------------------------------~~sskg~rGQtIVFT~ 448 (830)
T COG1202 415 NESEKWD-------------IIARLVKREFS---------------------------------TESSKGYRGQTIVFTY 448 (830)
T ss_pred CchHHHH-------------HHHHHHHHHHh---------------------------------hhhccCcCCceEEEec
Confidence 0011111 11111111111 1112334689999999
Q ss_pred CHhHHHHHHHHHHcCCCCCCCCCeEEEEecCCCCHHHHHhhcCCCCCCceEEEEecCccccccCCCCeeEEEeCCCCccc
Q 001817 586 GWDDINSLKDQLQAHPLLGDPSRVLLLACHGSMASSEQRLIFDKPEDGVRKIVLATNMAETSITINDVVFVIDCGKAKET 665 (1009)
Q Consensus 586 ~~~~i~~l~~~L~~~~~~~~~~~~~v~~lHs~l~~~er~~v~~~f~~G~~kVLVATniae~GIdIp~V~~VId~g~~k~~ 665 (1009)
++..++.++..|... ++.+.++|+||+..+|+.++..|.++.+.++|+|..++.|||+|.-.+|..+=
T Consensus 449 SRrr~h~lA~~L~~k-------G~~a~pYHaGL~y~eRk~vE~~F~~q~l~~VVTTAAL~AGVDFPASQVIFEsL----- 516 (830)
T COG1202 449 SRRRCHELADALTGK-------GLKAAPYHAGLPYKERKSVERAFAAQELAAVVTTAALAAGVDFPASQVIFESL----- 516 (830)
T ss_pred chhhHHHHHHHhhcC-------CcccccccCCCcHHHHHHHHHHHhcCCcceEeehhhhhcCCCCchHHHHHHHH-----
Confidence 999999999999876 77899999999999999999999999999999999999999999877665421
Q ss_pred cccCCCCCCcccccccCHHhHHhhhcccCCCC---CCcEEEecch-hhhhh-hcc----------CCCccccccCc----
Q 001817 666 SYDALNNTPCLLPSWISKAAARQRRGRAGRVQ---PGECYHLYPR-YVYDA-FAD----------YQLPELLRTPL---- 726 (1009)
Q Consensus 666 ~yd~~~~~~~l~~~~iS~as~~QR~GRAGR~~---~G~c~~Lys~-~~~~~-l~~----------~~~PEi~r~~L---- 726 (1009)
.+-..|+|..+|.||.|||||.. .|++|.|... ..|.. |.+ ...||-....-
T Consensus 517 ---------aMG~~WLs~~EF~QM~GRAGRp~yHdrGkVyllvepg~~Y~~~m~~TEdevA~kLL~s~~e~V~vey~ee~ 587 (830)
T COG1202 517 ---------AMGIEWLSVREFQQMLGRAGRPDYHDRGKVYLLVEPGKKYHASMEETEDEVAFKLLESEPEPVIVEYDEED 587 (830)
T ss_pred ---------HcccccCCHHHHHHHhcccCCCCcccCceEEEEecCChhhcccccccHHHHHHHHhcCCCCcceeccCcHH
Confidence 12358999999999999999994 4999999543 22321 111 11122111111
Q ss_pred -hhhhhHhhhcCcCC----HHHHHHhhcCCCChhhHHHHHHHHHHhccccCCC---CcChhhhhcccCCCChhHHHHHHH
Q 001817 727 -QSLCLQIKSLQLGS----ISEFLSRALQPPEPLSVKNAIEYLQIIGALDENE---NLTVLGRNLSMLPVEPKLGKMLIL 798 (1009)
Q Consensus 727 -~~~~L~lk~l~~~~----~~~fl~~~l~pP~~~~v~~al~~L~~lgald~~~---~lT~lG~~ls~lpl~p~~~k~ll~ 798 (1009)
.+-+|. ..+..+ +...-+..+. ..-....++..|...|+|+.+| ++|+.|++++..-+.|..+-.|..
T Consensus 588 e~e~vLA--~~~v~~s~~~i~~v~~~~~g--~~~~~~k~l~~Lee~g~i~~~G~~v~~T~yGrava~~Fl~p~~a~~Ir~ 663 (830)
T COG1202 588 EEENVLA--SAGVTNSLSVIERVNSLMLG--AAFDPKKALSKLEEYGMIKKKGNIVRPTPYGRAVAMSFLGPSEAEFIRE 663 (830)
T ss_pred HHHHHHH--HhhhcCcHHHHhhcChhhcc--ccCCHHHHHHHHHhcCCeeccCCEeeeccccceeEEeecCchHHHHHHH
Confidence 111222 112111 1111001111 1134678999999999999887 489999999999999999998887
Q ss_pred hhhhCCcchHHHHHHhhc-CCCccccCcChHHHHHHHHhhh
Q 001817 799 GAIFNCLDPVMTVVAGLS-VRDPFLMPFDKKDLAESAKAQF 838 (1009)
Q Consensus 799 ~~~~~c~~~~l~i~a~ls-~~~~f~~p~~~~~~~~~~~~~f 838 (1009)
+. ....+|.- |++.|. ..+.++.++-+++.....+.++
T Consensus 664 ~v-~~~~~pl~-i~~~l~pfE~ayls~~l~r~i~~~~~~~v 702 (830)
T COG1202 664 GV-LASMDPLR-IAAELEPFENAYLSGFLKRAIESALRGRV 702 (830)
T ss_pred hh-hccCChHh-HhhccccccccccChHHHHHHHHHhcCCC
Confidence 76 45556654 444443 3444444444444444444443
No 35
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=4.3e-35 Score=302.13 Aligned_cols=328 Identities=18% Similarity=0.251 Sum_probs=238.5
Q ss_pred HHHHhhcCCCCHHHHHHHHHHHHcCCeEEEEecCCCchhhhHHHHHHHHHHHHhcCCceEEEechhHHHHHHHHHHHHHH
Q 001817 289 KMLEFRRSLPSYKERDALLKAISENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAA 368 (1009)
Q Consensus 289 ~l~~~r~~LPi~~~q~~il~~l~~~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~IvvtqPrR~La~qva~rva~ 368 (1009)
.+..+-..-|...||.+|... .++++||+++..|+|||..+..-++..+.- ......++|+.|||+||.|+-+.+..
T Consensus 41 giY~yGfekPS~IQqrAi~~I-lkGrdViaQaqSGTGKTa~~si~vlq~~d~--~~r~tQ~lilsPTRELa~Qi~~vi~a 117 (400)
T KOG0328|consen 41 GIYAYGFEKPSAIQQRAIPQI-LKGRDVIAQAQSGTGKTATFSISVLQSLDI--SVRETQALILSPTRELAVQIQKVILA 117 (400)
T ss_pred HHHHhccCCchHHHhhhhhhh-hcccceEEEecCCCCceEEEEeeeeeeccc--ccceeeEEEecChHHHHHHHHHHHHH
Confidence 577777888999999988774 588999999999999998777666665432 22335788888999999999887754
Q ss_pred H---hCCcccceeeeeeeec--cccCCCcEEEEEccHHHHHHHhcCC-CCCCccEEEEeCCCcCCCcchHHHHHHHHHcc
Q 001817 369 E---RGEKLGESVGYKVRLE--GMKGRDTRLMFCTTGILLRRLLVDR-SLRGVTHVIVDEIHERGMNEDFLLIVLKELLP 442 (1009)
Q Consensus 369 e---~~~~~g~~vGy~vr~e--~~~~~~t~Iiv~T~g~Ll~~L~~~~-~l~~is~IIIDEaHeR~~~~d~ll~llk~ll~ 442 (1009)
. ++..+...+|-..-.+ ....-..+++.+|||++++++.... .-+.+.++|+||++|. ++-.|-..+...+..
T Consensus 118 lg~~mnvq~hacigg~n~gedikkld~G~hvVsGtPGrv~dmikr~~L~tr~vkmlVLDEaDem-L~kgfk~Qiydiyr~ 196 (400)
T KOG0328|consen 118 LGDYMNVQCHACIGGKNLGEDIKKLDYGQHVVSGTPGRVLDMIKRRSLRTRAVKMLVLDEADEM-LNKGFKEQIYDIYRY 196 (400)
T ss_pred hcccccceEEEEecCCccchhhhhhcccceEeeCCCchHHHHHHhccccccceeEEEeccHHHH-HHhhHHHHHHHHHHh
Confidence 3 2233322232111111 1122467899999999999997765 6788999999999984 444555555555555
Q ss_pred cCCCCcEEEeccCCCHHHH--HhhhCCCCeeccCCcccceeeEehhhHHHHhhhccCcccccccchhhhHHHHHHHHHHH
Q 001817 443 RRPELRLILMSATLNAELF--SSYFGGAPMLHIPGFTYPVRAYFLENILEMTRYRLNTYNQIDDYGQEKSWKMQKQALAL 520 (1009)
Q Consensus 443 ~~~~lkvIlmSATl~~~~~--~~yf~~~pvi~i~g~~~pv~~~yl~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 520 (1009)
..|+.|++++|||++.+.+ .+.|-.. ||++..-.+
T Consensus 197 lp~~~Qvv~~SATlp~eilemt~kfmtd----------pvrilvkrd--------------------------------- 233 (400)
T KOG0328|consen 197 LPPGAQVVLVSATLPHEILEMTEKFMTD----------PVRILVKRD--------------------------------- 233 (400)
T ss_pred CCCCceEEEEeccCcHHHHHHHHHhcCC----------ceeEEEecC---------------------------------
Confidence 6679999999999987632 2333222 222221110
Q ss_pred HhhhhhHHHHHHHHHHHhhhcchhhhhhhccccCCCCCcchhhHHHHHHHHHhhcCCCcEEEEcCCHhHHHHHHHHHHcC
Q 001817 521 RKRKSSIASAVEDALEAADFREYSVQTQQSLSCWNPDSIGFNLIEHVLCHIVKKERPGAVLVFMTGWDDINSLKDQLQAH 600 (1009)
Q Consensus 521 ~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~~~~i~~l~~~L~~~ 600 (1009)
+...+-+++.+...+ ..+.+.+.++.+.....-.+.+|||+++..+..+.+.++..
T Consensus 234 ----eltlEgIKqf~v~ve--------------------~EewKfdtLcdLYd~LtItQavIFcnTk~kVdwLtekm~~~ 289 (400)
T KOG0328|consen 234 ----ELTLEGIKQFFVAVE--------------------KEEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREA 289 (400)
T ss_pred ----CCchhhhhhheeeec--------------------hhhhhHhHHHHHhhhhehheEEEEecccchhhHHHHHHHhh
Confidence 000111222221111 11234455666666666678999999999999999999987
Q ss_pred CCCCCCCCeEEEEecCCCCHHHHHhhcCCCCCCceEEEEecCccccccCCCCeeEEEeCCCCccccccCCCCCCcccccc
Q 001817 601 PLLGDPSRVLLLACHGSMASSEQRLIFDKPEDGVRKIVLATNMAETSITINDVVFVIDCGKAKETSYDALNNTPCLLPSW 680 (1009)
Q Consensus 601 ~~~~~~~~~~v~~lHs~l~~~er~~v~~~f~~G~~kVLVATniae~GIdIp~V~~VId~g~~k~~~yd~~~~~~~l~~~~ 680 (1009)
.+.|..+||.|+++||.+++..|++|+.+||++|++-++|+|+|.|..|||+++|-
T Consensus 290 -------nftVssmHGDm~qkERd~im~dFRsg~SrvLitTDVwaRGiDv~qVslviNYDLP~----------------- 345 (400)
T KOG0328|consen 290 -------NFTVSSMHGDMEQKERDKIMNDFRSGKSRVLITTDVWARGIDVQQVSLVINYDLPN----------------- 345 (400)
T ss_pred -------CceeeeccCCcchhHHHHHHHHhhcCCceEEEEechhhccCCcceeEEEEecCCCc-----------------
Confidence 78899999999999999999999999999999999999999999999999977775
Q ss_pred cCHHhHHhhhcccCCCC-CCcEEEecchhhhhh
Q 001817 681 ISKAAARQRRGRAGRVQ-PGECYHLYPRYVYDA 712 (1009)
Q Consensus 681 iS~as~~QR~GRAGR~~-~G~c~~Lys~~~~~~ 712 (1009)
.+..|+||+||.||.| .|.++.+...++...
T Consensus 346 -nre~YIHRIGRSGRFGRkGvainFVk~~d~~~ 377 (400)
T KOG0328|consen 346 -NRELYIHRIGRSGRFGRKGVAINFVKSDDLRI 377 (400)
T ss_pred -cHHHHhhhhccccccCCcceEEEEecHHHHHH
Confidence 5678899999999995 599999988876544
No 36
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=100.00 E-value=6e-35 Score=323.96 Aligned_cols=359 Identities=18% Similarity=0.208 Sum_probs=253.0
Q ss_pred HHHHHHHHHhhHHHHHHHHHHhcChhhH----HHHHhhcCCCCHHHHHHHHHHHHcCCeEEEEecCCCchhhhHHHHHHH
Q 001817 261 VVRERILRQRSLQMHEKQQAWQESPEGQ----KMLEFRRSLPSYKERDALLKAISENQVVVVSGETGCGKTTQLPQYILE 336 (1009)
Q Consensus 261 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~----~l~~~r~~LPi~~~q~~il~~l~~~~~vII~apTGSGKTt~~~~~ile 336 (1009)
..++++.+++..-.......+.+.|.-+ .+.+.....|...|++.|..++ .|++|+-.|.||||||++++.++++
T Consensus 51 e~i~~l~~ky~ei~~~~~~kF~dlpls~~t~kgLke~~fv~~teiQ~~~Ip~aL-~G~DvlGAAkTGSGKTLAFlvPvlE 129 (758)
T KOG0343|consen 51 EEIEELKQKYAEIDSTTIKKFADLPLSQKTLKGLKEAKFVKMTEIQRDTIPMAL-QGHDVLGAAKTGSGKTLAFLVPVLE 129 (758)
T ss_pred HHHHHHHHHHHHhhhhhhhhHHhCCCchHHHHhHhhcCCccHHHHHHhhcchhc-cCcccccccccCCCceeeehHHHHH
Confidence 3334433444332223334444444332 2333334467777777777766 8889999999999999999999999
Q ss_pred HHHHHhc--CCceEEEechhHHHHHHHHHHHHHHH---hCCcccceee-eeeeeccccCCCcEEEEEccHHHHHHHhcCC
Q 001817 337 SETEAAR--GAACSIICTQPRRISAMAVSERVAAE---RGEKLGESVG-YKVRLEGMKGRDTRLMFCTTGILLRRLLVDR 410 (1009)
Q Consensus 337 ~~~~~~~--~~~~~IvvtqPrR~La~qva~rva~e---~~~~~g~~vG-y~vr~e~~~~~~t~Iiv~T~g~Ll~~L~~~~ 410 (1009)
.++.... ..+.-++++.|||+||.|+.+.+.+. .+...|..+| -.+.++...-.+.+|+|||||+||+.|...+
T Consensus 130 ~L~r~kWs~~DGlGalIISPTRELA~QtFevL~kvgk~h~fSaGLiiGG~~~k~E~eRi~~mNILVCTPGRLLQHmde~~ 209 (758)
T KOG0343|consen 130 ALYRLKWSPTDGLGALIISPTRELALQTFEVLNKVGKHHDFSAGLIIGGKDVKFELERISQMNILVCTPGRLLQHMDENP 209 (758)
T ss_pred HHHHcCCCCCCCceeEEecchHHHHHHHHHHHHHHhhccccccceeecCchhHHHHHhhhcCCeEEechHHHHHHhhhcC
Confidence 9987643 22334555669999999999877543 3455555555 3444555555678999999999999999888
Q ss_pred --CCCCccEEEEeCCCcCCCcchHHHHHHHHHcccCCCCcEEEeccCC--CHHHHHhhhC-CCCeeccCCcccceeeEeh
Q 001817 411 --SLRGVTHVIVDEIHERGMNEDFLLIVLKELLPRRPELRLILMSATL--NAELFSSYFG-GAPMLHIPGFTYPVRAYFL 485 (1009)
Q Consensus 411 --~l~~is~IIIDEaHeR~~~~d~ll~llk~ll~~~~~lkvIlmSATl--~~~~~~~yf~-~~pvi~i~g~~~pv~~~yl 485 (1009)
.-.++.++|+|||+ |-+++.|--.+-..+-...+..|.+++|||. +..++++.-- ++..+.+-
T Consensus 210 ~f~t~~lQmLvLDEAD-R~LDMGFk~tL~~Ii~~lP~~RQTLLFSATqt~svkdLaRLsL~dP~~vsvh----------- 277 (758)
T KOG0343|consen 210 NFSTSNLQMLVLDEAD-RMLDMGFKKTLNAIIENLPKKRQTLLFSATQTKSVKDLARLSLKDPVYVSVH----------- 277 (758)
T ss_pred CCCCCcceEEEeccHH-HHHHHhHHHHHHHHHHhCChhheeeeeecccchhHHHHHHhhcCCCcEEEEe-----------
Confidence 45688999999999 6678777655544444456678999999998 4455555421 21111111
Q ss_pred hhHHHHhhhccCcccccccchhhhHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhcchhhhhhhccccCCCCCcchhhHH
Q 001817 486 ENILEMTRYRLNTYNQIDDYGQEKSWKMQKQALALRKRKSSIASAVEDALEAADFREYSVQTQQSLSCWNPDSIGFNLIE 565 (1009)
Q Consensus 486 ~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~ 565 (1009)
+. ......+.+.+.+. .+....+.
T Consensus 278 e~-----------------------------------a~~atP~~L~Q~y~---------------------~v~l~~Ki 301 (758)
T KOG0343|consen 278 EN-----------------------------------AVAATPSNLQQSYV---------------------IVPLEDKI 301 (758)
T ss_pred cc-----------------------------------ccccChhhhhheEE---------------------EEehhhHH
Confidence 00 00000011111100 01122334
Q ss_pred HHHHHHHhhcCCCcEEEEcCCHhHHHHHHHHHHcCCCCCCCCCeEEEEecCCCCHHHHHhhcCCCCCCceEEEEecCccc
Q 001817 566 HVLCHIVKKERPGAVLVFMTGWDDINSLKDQLQAHPLLGDPSRVLLLACHGSMASSEQRLIFDKPEDGVRKIVLATNMAE 645 (1009)
Q Consensus 566 ~ll~~i~~~~~~g~iLVFl~~~~~i~~l~~~L~~~~~~~~~~~~~v~~lHs~l~~~er~~v~~~f~~G~~kVLVATniae 645 (1009)
.+|...++.....++|||+.+.+++..+++.++.. .+++.++.+||.|++..|..++..|-...--||+||++++
T Consensus 302 ~~L~sFI~shlk~K~iVF~SscKqvkf~~e~F~rl-----rpg~~l~~L~G~~~Q~~R~ev~~~F~~~~~~vLF~TDv~a 376 (758)
T KOG0343|consen 302 DMLWSFIKSHLKKKSIVFLSSCKQVKFLYEAFCRL-----RPGIPLLALHGTMSQKKRIEVYKKFVRKRAVVLFCTDVAA 376 (758)
T ss_pred HHHHHHHHhccccceEEEEehhhHHHHHHHHHHhc-----CCCCceeeeccchhHHHHHHHHHHHHHhcceEEEeehhhh
Confidence 55666677777889999999999999999999876 3588899999999999999999999988889999999999
Q ss_pred cccCCCCeeEEEeCCCCccccccCCCCCCcccccccCHHhHHhhhcccCCCC-CCcEEEecchhhhh
Q 001817 646 TSITINDVVFVIDCGKAKETSYDALNNTPCLLPSWISKAAARQRRGRAGRVQ-PGECYHLYPRYVYD 711 (1009)
Q Consensus 646 ~GIdIp~V~~VId~g~~k~~~yd~~~~~~~l~~~~iS~as~~QR~GRAGR~~-~G~c~~Lys~~~~~ 711 (1009)
+|+|+|.|++||+.+.|- ...+|+||+||+.|.. .|.|+.+.++...+
T Consensus 377 RGLDFpaVdwViQ~DCPe------------------dv~tYIHRvGRtAR~~~~G~sll~L~psEeE 425 (758)
T KOG0343|consen 377 RGLDFPAVDWVIQVDCPE------------------DVDTYIHRVGRTARYKERGESLLMLTPSEEE 425 (758)
T ss_pred ccCCCcccceEEEecCch------------------hHHHHHHHhhhhhcccCCCceEEEEcchhHH
Confidence 999999999999966664 6678889999999994 59999988766543
No 37
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.4e-34 Score=317.15 Aligned_cols=338 Identities=20% Similarity=0.205 Sum_probs=235.6
Q ss_pred CHHHHHHHHHHHHcCCeEEEEecCCCchhhhHHHHHHHHHHHHhc-C--CceEEEechhHHHHHHHHHHHHHHHh----C
Q 001817 299 SYKERDALLKAISENQVVVVSGETGCGKTTQLPQYILESETEAAR-G--AACSIICTQPRRISAMAVSERVAAER----G 371 (1009)
Q Consensus 299 i~~~q~~il~~l~~~~~vII~apTGSGKTt~~~~~ile~~~~~~~-~--~~~~IvvtqPrR~La~qva~rva~e~----~ 371 (1009)
..+.|.+.+..+.++++|++.++||||||+++.+++++.+..... . .....+++.|||+||.|+.+.+.... .
T Consensus 29 mTpVQa~tIPlll~~KDVvveavTGSGKTlAFllP~le~i~rr~~~~~~~~vgalIIsPTRELa~QI~~V~~~F~~~l~~ 108 (567)
T KOG0345|consen 29 MTPVQAATIPLLLKNKDVVVEAVTGSGKTLAFLLPMLEIIYRREAKTPPGQVGALIISPTRELARQIREVAQPFLEHLPN 108 (567)
T ss_pred cCHHHHhhhHHHhcCCceEEEcCCCCCchhhHHHHHHHHHHhhccCCCccceeEEEecCcHHHHHHHHHHHHHHHHhhhc
Confidence 345577778889999999999999999999999999998865422 1 22356777799999999987665443 2
Q ss_pred Ccccceeee-eee--eccccCCCcEEEEEccHHHHHHHhcCC---CCCCccEEEEeCCCcCCCcchHHHHHHHHHcccCC
Q 001817 372 EKLGESVGY-KVR--LEGMKGRDTRLMFCTTGILLRRLLVDR---SLRGVTHVIVDEIHERGMNEDFLLIVLKELLPRRP 445 (1009)
Q Consensus 372 ~~~g~~vGy-~vr--~e~~~~~~t~Iiv~T~g~Ll~~L~~~~---~l~~is~IIIDEaHeR~~~~d~ll~llk~ll~~~~ 445 (1009)
..+...+|- .+. ......++++|+|+|||+|++.+.... .+..+.++|+|||+ |-++..|-..+-..+-....
T Consensus 109 l~~~l~vGG~~v~~Di~~fkee~~nIlVgTPGRL~di~~~~~~~l~~rsLe~LVLDEAD-rLldmgFe~~~n~ILs~LPK 187 (567)
T KOG0345|consen 109 LNCELLVGGRSVEEDIKTFKEEGPNILVGTPGRLLDILQREAEKLSFRSLEILVLDEAD-RLLDMGFEASVNTILSFLPK 187 (567)
T ss_pred cceEEEecCccHHHHHHHHHHhCCcEEEeCchhHHHHHhchhhhccccccceEEecchH-hHhcccHHHHHHHHHHhccc
Confidence 223333442 111 112234678999999999999998744 45599999999999 66777776665555444555
Q ss_pred CCcEEEeccCCCHH--HHHhhhCCCCeeccCCcccceeeEehhhHHHHhhhccCcccccccchhhhHHHHHHHHHHHHhh
Q 001817 446 ELRLILMSATLNAE--LFSSYFGGAPMLHIPGFTYPVRAYFLENILEMTRYRLNTYNQIDDYGQEKSWKMQKQALALRKR 523 (1009)
Q Consensus 446 ~lkvIlmSATl~~~--~~~~yf~~~pvi~i~g~~~pv~~~yl~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 523 (1009)
+.+.=++|||.+.+ .+... |-..||.+..-..-.. ..
T Consensus 188 QRRTGLFSATq~~~v~dL~ra----------GLRNpv~V~V~~k~~~-----~t-------------------------- 226 (567)
T KOG0345|consen 188 QRRTGLFSATQTQEVEDLARA----------GLRNPVRVSVKEKSKS-----AT-------------------------- 226 (567)
T ss_pred ccccccccchhhHHHHHHHHh----------hccCceeeeecccccc-----cC--------------------------
Confidence 67789999998533 33322 2222333221110000 00
Q ss_pred hhhHHHHHHHHHHHhhhcchhhhhhhccccCCCCCcchhhHHHHHHHHHhhcCCCcEEEEcCCHhHHHHHHHHHHcCCCC
Q 001817 524 KSSIASAVEDALEAADFREYSVQTQQSLSCWNPDSIGFNLIEHVLCHIVKKERPGAVLVFMTGWDDINSLKDQLQAHPLL 603 (1009)
Q Consensus 524 ~~~~~~~v~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~~~~i~~l~~~L~~~~~~ 603 (1009)
.+.+... .-.+..+.+...+.+++.+...+++|||++|...++..+..+... +
T Consensus 227 ----PS~L~~~---------------------Y~v~~a~eK~~~lv~~L~~~~~kK~iVFF~TCasVeYf~~~~~~~--l 279 (567)
T KOG0345|consen 227 ----PSSLALE---------------------YLVCEADEKLSQLVHLLNNNKDKKCIVFFPTCASVEYFGKLFSRL--L 279 (567)
T ss_pred ----chhhcce---------------------eeEecHHHHHHHHHHHHhccccccEEEEecCcchHHHHHHHHHHH--h
Confidence 0000000 001122334456777777777899999999999999999888765 1
Q ss_pred CCCCCeEEEEecCCCCHHHHHhhcCCCCCCceEEEEecCccccccCCCCeeEEEeCCCCccccccCCCCCCcccccccCH
Q 001817 604 GDPSRVLLLACHGSMASSEQRLIFDKPEDGVRKIVLATNMAETSITINDVVFVIDCGKAKETSYDALNNTPCLLPSWISK 683 (1009)
Q Consensus 604 ~~~~~~~v~~lHs~l~~~er~~v~~~f~~G~~kVLVATniae~GIdIp~V~~VId~g~~k~~~yd~~~~~~~l~~~~iS~ 683 (1009)
....+..+||.|.+..|..+++.|+.....+++||++|++|||||+|++||+++.|+ ..
T Consensus 280 ---~~~~i~~iHGK~~q~~R~k~~~~F~~~~~~vl~~TDVaARGlDip~iD~VvQ~DpP~------------------~~ 338 (567)
T KOG0345|consen 280 ---KKREIFSIHGKMSQKARAKVLEAFRKLSNGVLFCTDVAARGLDIPGIDLVVQFDPPK------------------DP 338 (567)
T ss_pred ---CCCcEEEecchhcchhHHHHHHHHHhccCceEEeehhhhccCCCCCceEEEecCCCC------------------Ch
Confidence 256699999999999999999999998889999999999999999999999966665 45
Q ss_pred HhHHhhhcccCCCC-CCcEEEecc--hhhhhh-hccCCCccccccCc
Q 001817 684 AAARQRRGRAGRVQ-PGECYHLYP--RYVYDA-FADYQLPELLRTPL 726 (1009)
Q Consensus 684 as~~QR~GRAGR~~-~G~c~~Lys--~~~~~~-l~~~~~PEi~r~~L 726 (1009)
+++.||+||+||.| .|.++.+.. +..|-. |.-...|++.+...
T Consensus 339 ~~FvHR~GRTaR~gr~G~Aivfl~p~E~aYveFl~i~~~v~le~~~~ 385 (567)
T KOG0345|consen 339 SSFVHRCGRTARAGREGNAIVFLNPREEAYVEFLRIKGKVELERIDT 385 (567)
T ss_pred hHHHhhcchhhhccCccceEEEecccHHHHHHHHHhcCccchhhhcc
Confidence 57779999999995 487766643 455655 44455677666544
No 38
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=100.00 E-value=6.6e-34 Score=314.18 Aligned_cols=319 Identities=18% Similarity=0.193 Sum_probs=228.8
Q ss_pred CCHHHHHHHHHHHHcCCeEEEEecCCCchhhhHHHHHHHHHHHHhc--CCceEEEechhHHHHHHHHHHHHHHHhCCccc
Q 001817 298 PSYKERDALLKAISENQVVVVSGETGCGKTTQLPQYILESETEAAR--GAACSIICTQPRRISAMAVSERVAAERGEKLG 375 (1009)
Q Consensus 298 Pi~~~q~~il~~l~~~~~vII~apTGSGKTt~~~~~ile~~~~~~~--~~~~~IvvtqPrR~La~qva~rva~e~~~~~g 375 (1009)
-....|+..+..+..++++++.|-||||||++++++.++.++.... .....++++.|||+||+|++....+.+...-+
T Consensus 104 ~MT~VQ~~ti~pll~gkDvl~~AKTGtGKTlAFLiPaie~l~k~~~~~r~~~~vlIi~PTRELA~Q~~~eak~Ll~~h~~ 183 (543)
T KOG0342|consen 104 TMTPVQQKTIPPLLEGKDVLAAAKTGTGKTLAFLLPAIELLRKLKFKPRNGTGVLIICPTRELAMQIFAEAKELLKYHES 183 (543)
T ss_pred chhHHHHhhcCccCCCccceeeeccCCCceeeehhHHHHHHHhcccCCCCCeeEEEecccHHHHHHHHHHHHHHHhhCCC
Confidence 3455667777778899999999999999999999999998876431 12234555559999999999988877755545
Q ss_pred ceeeeeeeeccc------cCCCcEEEEEccHHHHHHHhcCC--CCCCccEEEEeCCCcCCCcchHHHHHHHHHcccCCCC
Q 001817 376 ESVGYKVRLEGM------KGRDTRLMFCTTGILLRRLLVDR--SLRGVTHVIVDEIHERGMNEDFLLIVLKELLPRRPEL 447 (1009)
Q Consensus 376 ~~vGy~vr~e~~------~~~~t~Iiv~T~g~Ll~~L~~~~--~l~~is~IIIDEaHeR~~~~d~ll~llk~ll~~~~~l 447 (1009)
..+|+-+..... ....++|+|+|||+|++.+++.+ ...++.++|+|||+ |-++..|-..+.+.+-......
T Consensus 184 ~~v~~viGG~~~~~e~~kl~k~~niliATPGRLlDHlqNt~~f~~r~~k~lvlDEAD-rlLd~GF~~di~~Ii~~lpk~r 262 (543)
T KOG0342|consen 184 ITVGIVIGGNNFSVEADKLVKGCNILIATPGRLLDHLQNTSGFLFRNLKCLVLDEAD-RLLDIGFEEDVEQIIKILPKQR 262 (543)
T ss_pred cceEEEeCCccchHHHHHhhccccEEEeCCchHHhHhhcCCcchhhccceeEeecch-hhhhcccHHHHHHHHHhccccc
Confidence 666665544332 22479999999999999999877 56777899999999 5566666666655554455678
Q ss_pred cEEEeccCCCHH--HHHhh-hCCCCeeccCCcccceeeEehhhHHHHhhhccCcccccccchhhhHHHHHHHHHHHHhhh
Q 001817 448 RLILMSATLNAE--LFSSY-FGGAPMLHIPGFTYPVRAYFLENILEMTRYRLNTYNQIDDYGQEKSWKMQKQALALRKRK 524 (1009)
Q Consensus 448 kvIlmSATl~~~--~~~~y-f~~~pvi~i~g~~~pv~~~yl~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 524 (1009)
|..++|||.+.+ .++.- +.. -|+-+...+ -+.
T Consensus 263 qt~LFSAT~~~kV~~l~~~~L~~----------d~~~v~~~d------------------~~~----------------- 297 (543)
T KOG0342|consen 263 QTLLFSATQPSKVKDLARGALKR----------DPVFVNVDD------------------GGE----------------- 297 (543)
T ss_pred eeeEeeCCCcHHHHHHHHHhhcC----------CceEeecCC------------------CCC-----------------
Confidence 899999999655 22211 000 011000000 000
Q ss_pred hhHHHHHHHHHHHhhhcchhhhhhhccccCCCCCcchhhHHHHHHHHHhhcCC-CcEEEEcCCHhHHHHHHHHHHcCCCC
Q 001817 525 SSIASAVEDALEAADFREYSVQTQQSLSCWNPDSIGFNLIEHVLCHIVKKERP-GAVLVFMTGWDDINSLKDQLQAHPLL 603 (1009)
Q Consensus 525 ~~~~~~v~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~~~~-g~iLVFl~~~~~i~~l~~~L~~~~~~ 603 (1009)
....+.+++.+ ...+.. .-..++..++++... .+|+|||+|...+..+++.|...
T Consensus 298 ~~The~l~Qgy-----------------vv~~~~----~~f~ll~~~LKk~~~~~KiiVF~sT~~~vk~~~~lL~~~--- 353 (543)
T KOG0342|consen 298 RETHERLEQGY-----------------VVAPSD----SRFSLLYTFLKKNIKRYKIIVFFSTCMSVKFHAELLNYI--- 353 (543)
T ss_pred cchhhcccceE-----------------Eecccc----chHHHHHHHHHHhcCCceEEEEechhhHHHHHHHHHhhc---
Confidence 00000010000 000000 011233344444333 79999999999999999999865
Q ss_pred CCCCCeEEEEecCCCCHHHHHhhcCCCCCCceEEEEecCccccccCCCCeeEEEeCCCCccccccCCCCCCcccccccCH
Q 001817 604 GDPSRVLLLACHGSMASSEQRLIFDKPEDGVRKIVLATNMAETSITINDVVFVIDCGKAKETSYDALNNTPCLLPSWISK 683 (1009)
Q Consensus 604 ~~~~~~~v~~lHs~l~~~er~~v~~~f~~G~~kVLVATniae~GIdIp~V~~VId~g~~k~~~yd~~~~~~~l~~~~iS~ 683 (1009)
++.|..+||++++..|..++..|++.+.-|||||||+++|+|+|+|++||++|.|. ..
T Consensus 354 ----dlpv~eiHgk~~Q~kRT~~~~~F~kaesgIL~cTDVaARGlD~P~V~~VvQ~~~P~------------------d~ 411 (543)
T KOG0342|consen 354 ----DLPVLEIHGKQKQNKRTSTFFEFCKAESGILVCTDVAARGLDIPDVDWVVQYDPPS------------------DP 411 (543)
T ss_pred ----CCchhhhhcCCcccccchHHHHHhhcccceEEecchhhccCCCCCceEEEEeCCCC------------------CH
Confidence 67799999999999999999999999999999999999999999999999988887 67
Q ss_pred HhHHhhhcccCCCC-CCcEEEecchh
Q 001817 684 AAARQRRGRAGRVQ-PGECYHLYPRY 708 (1009)
Q Consensus 684 as~~QR~GRAGR~~-~G~c~~Lys~~ 708 (1009)
.+|+||+||+||.| .|+.+.+..+.
T Consensus 412 ~~YIHRvGRTaR~gk~G~alL~l~p~ 437 (543)
T KOG0342|consen 412 EQYIHRVGRTAREGKEGKALLLLAPW 437 (543)
T ss_pred HHHHHHhccccccCCCceEEEEeChh
Confidence 79999999999984 59998886654
No 39
>PRK13767 ATP-dependent helicase; Provisional
Probab=100.00 E-value=1.5e-33 Score=354.13 Aligned_cols=401 Identities=20% Similarity=0.224 Sum_probs=243.5
Q ss_pred HHHHhhcCCCCHHHHHHHHHHHHcCCeEEEEecCCCchhhhHHHHHHHHHHHHhc----CCceEEEechhHHHHHHHHHH
Q 001817 289 KMLEFRRSLPSYKERDALLKAISENQVVVVSGETGCGKTTQLPQYILESETEAAR----GAACSIICTQPRRISAMAVSE 364 (1009)
Q Consensus 289 ~l~~~r~~LPi~~~q~~il~~l~~~~~vII~apTGSGKTt~~~~~ile~~~~~~~----~~~~~IvvtqPrR~La~qva~ 364 (1009)
++++.+..-|...|++ .++.+.++++++|+||||||||+++.+++++.+..... ..++.+++++|+|+||.|+.+
T Consensus 24 ~~~~~~~~~~tpiQ~~-Ai~~il~g~nvli~APTGSGKTlaa~Lpil~~l~~~~~~~~~~~~~~~LyIsPtraLa~di~~ 102 (876)
T PRK13767 24 EWFKEKFGTFTPPQRY-AIPLIHEGKNVLISSPTGSGKTLAAFLAIIDELFRLGREGELEDKVYCLYVSPLRALNNDIHR 102 (876)
T ss_pred HHHHHccCCCCHHHHH-HHHHHHcCCCEEEECCCCCcHHHHHHHHHHHHHHhhccccCCCCCeEEEEEcCHHHHHHHHHH
Confidence 3333333446666555 45667899999999999999999999999988765321 235678888899999999988
Q ss_pred HHHHH----------hCCcc-cceeeeeeeecc------ccCCCcEEEEEccHHHHHHHhcCC---CCCCccEEEEeCCC
Q 001817 365 RVAAE----------RGEKL-GESVGYKVRLEG------MKGRDTRLMFCTTGILLRRLLVDR---SLRGVTHVIVDEIH 424 (1009)
Q Consensus 365 rva~e----------~~~~~-g~~vGy~vr~e~------~~~~~t~Iiv~T~g~Ll~~L~~~~---~l~~is~IIIDEaH 424 (1009)
++.+. .|..+ +..++....... .....++|+|+||+.|...+.+.. .+.++++|||||||
T Consensus 103 ~L~~~l~~i~~~~~~~g~~~~~i~v~v~~Gdt~~~~r~~~l~~~p~IlVtTPE~L~~ll~~~~~~~~l~~l~~VVIDE~H 182 (876)
T PRK13767 103 NLEEPLTEIREIAKERGEELPEIRVAIRTGDTSSYEKQKMLKKPPHILITTPESLAILLNSPKFREKLRTVKWVIVDEIH 182 (876)
T ss_pred HHHHHHHHHHHHHHhcCCCcCCeeEEEEcCCCCHHHHHHHHhCCCCEEEecHHHHHHHhcChhHHHHHhcCCEEEEechh
Confidence 65431 23333 222221111100 112457899999999976664432 57899999999999
Q ss_pred cC-----CCcchHHHHHHHHHcccCCCCcEEEeccCC-CHHHHHhhhCCCCeeccCCcccceeeE---ehhhHHHHhhhc
Q 001817 425 ER-----GMNEDFLLIVLKELLPRRPELRLILMSATL-NAELFSSYFGGAPMLHIPGFTYPVRAY---FLENILEMTRYR 495 (1009)
Q Consensus 425 eR-----~~~~d~ll~llk~ll~~~~~lkvIlmSATl-~~~~~~~yf~~~pvi~i~g~~~pv~~~---yl~~i~~~~~~~ 495 (1009)
+. |......+..+..+. .++.++|++|||+ +.+.+++|+.+.... +...++.+. +.... +. ..
T Consensus 183 ~l~~~~RG~~l~~~L~rL~~l~--~~~~q~IglSATl~~~~~va~~L~~~~~~---~~~r~~~iv~~~~~k~~-~i--~v 254 (876)
T PRK13767 183 SLAENKRGVHLSLSLERLEELA--GGEFVRIGLSATIEPLEEVAKFLVGYEDD---GEPRDCEIVDARFVKPF-DI--KV 254 (876)
T ss_pred hhccCccHHHHHHHHHHHHHhc--CCCCeEEEEecccCCHHHHHHHhcCcccc---CCCCceEEEccCCCccc-eE--EE
Confidence 63 222233333343333 2578999999999 778899998753211 000111110 00000 00 00
Q ss_pred cCcccccccchhhhHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhcchhhhhhhccccCCCCCcchhhHHHHHHHHHhhc
Q 001817 496 LNTYNQIDDYGQEKSWKMQKQALALRKRKSSIASAVEDALEAADFREYSVQTQQSLSCWNPDSIGFNLIEHVLCHIVKKE 575 (1009)
Q Consensus 496 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~~ 575 (1009)
..+...+.... .... ...+...+..++.
T Consensus 255 ~~p~~~l~~~~-------------------------------------------------~~~~-~~~l~~~L~~~i~-- 282 (876)
T PRK13767 255 ISPVDDLIHTP-------------------------------------------------AEEI-SEALYETLHELIK-- 282 (876)
T ss_pred eccCccccccc-------------------------------------------------cchh-HHHHHHHHHHHHh--
Confidence 00000000000 0000 0011122333333
Q ss_pred CCCcEEEEcCCHhHHHHHHHHHHcCCCCCCCCCeEEEEecCCCCHHHHHhhcCCCCCCceEEEEecCccccccCCCCeeE
Q 001817 576 RPGAVLVFMTGWDDINSLKDQLQAHPLLGDPSRVLLLACHGSMASSEQRLIFDKPEDGVRKIVLATNMAETSITINDVVF 655 (1009)
Q Consensus 576 ~~g~iLVFl~~~~~i~~l~~~L~~~~~~~~~~~~~v~~lHs~l~~~er~~v~~~f~~G~~kVLVATniae~GIdIp~V~~ 655 (1009)
..+++||||+++..++.++..|...... ...+..+..|||+|+.++|..+++.|++|.++|||||+++++|||||+|++
T Consensus 283 ~~~~~LVF~nTr~~ae~la~~L~~~~~~-~~~~~~i~~hHg~ls~~~R~~ve~~fk~G~i~vLVaTs~Le~GIDip~Vd~ 361 (876)
T PRK13767 283 EHRTTLIFTNTRSGAERVLYNLRKRFPE-EYDEDNIGAHHSSLSREVRLEVEEKLKRGELKVVVSSTSLELGIDIGYIDL 361 (876)
T ss_pred cCCCEEEEeCCHHHHHHHHHHHHHhchh-hccccceeeeeCCCCHHHHHHHHHHHHcCCCeEEEECChHHhcCCCCCCcE
Confidence 2468999999999999999999863110 012356899999999999999999999999999999999999999999999
Q ss_pred EEeCCCCccccccCCCCCCcccccccCHHhHHhhhcccCCC-C---CCcEEEecchhhhh------hhccCCC--ccccc
Q 001817 656 VIDCGKAKETSYDALNNTPCLLPSWISKAAARQRRGRAGRV-Q---PGECYHLYPRYVYD------AFADYQL--PELLR 723 (1009)
Q Consensus 656 VId~g~~k~~~yd~~~~~~~l~~~~iS~as~~QR~GRAGR~-~---~G~c~~Lys~~~~~------~l~~~~~--PEi~r 723 (1009)
||+.|.|+ |.++|.||+|||||. + .|.++.+-..+..+ ...+..+ ..+..
T Consensus 362 VI~~~~P~------------------sv~~ylQRiGRaGR~~g~~~~g~ii~~~~~~l~e~~~~~~~~~~~~ie~~~~~~ 423 (876)
T PRK13767 362 VVLLGSPK------------------SVSRLLQRIGRAGHRLGEVSKGRIIVVDRDDLVECAVLLKKAREGKIDRVHIPK 423 (876)
T ss_pred EEEeCCCC------------------CHHHHHHhcccCCCCCCCCCcEEEEEcCchhHHHHHHHHHHHHhCCCCCCCCCC
Confidence 99988886 888999999999987 2 36666543322111 1111111 11222
Q ss_pred cCchhhhhHhhhc------CcCCHHHHHHhhc--CCCChhhHHHHHHHHHHhcc
Q 001817 724 TPLQSLCLQIKSL------QLGSISEFLSRAL--QPPEPLSVKNAIEYLQIIGA 769 (1009)
Q Consensus 724 ~~L~~~~L~lk~l------~~~~~~~fl~~~l--~pP~~~~v~~al~~L~~lga 769 (1009)
.+++-++-++.++ ..+++.+++..+. .--+.+.....+++|..-++
T Consensus 424 ~~~dvl~q~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~ 477 (876)
T PRK13767 424 NPLDVLAQHIVGMAIERPWDIEEAYNIVRRAYPYRDLSDEDFESVLRYLAGDYG 477 (876)
T ss_pred CcHHHHHHHHHHHHHcCCCCHHHHHHHHhccCCcccCCHHHHHHHHHHHhccCc
Confidence 2333333333332 2234444543332 11244667888888876643
No 40
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=2.6e-33 Score=331.88 Aligned_cols=306 Identities=21% Similarity=0.206 Sum_probs=209.8
Q ss_pred HHHHHHHHHHHcCCeEEEEecCCCchhhhHHHHHHHHHHHHhcCCceEEEechhHHHHHHHHHHHHHHHhCCcccceeee
Q 001817 301 KERDALLKAISENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERGEKLGESVGY 380 (1009)
Q Consensus 301 ~~q~~il~~l~~~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~IvvtqPrR~La~qva~rva~e~~~~~g~~vGy 380 (1009)
+.|.++++++.+++++++++|||||||+++.++++.. .+..+|++|+++|+.|..+++.. .|.......|.
T Consensus 14 ~~Q~~ai~~~l~g~dvlv~apTGsGKTl~y~lp~l~~--------~~~~lVi~P~~~L~~dq~~~l~~-~gi~~~~l~~~ 84 (470)
T TIGR00614 14 PVQLEVINAVLLGRDCFVVMPTGGGKSLCYQLPALCS--------DGITLVISPLISLMEDQVLQLKA-SGIPATFLNSS 84 (470)
T ss_pred HHHHHHHHHHHcCCCEEEEcCCCCcHhHHHHHHHHHc--------CCcEEEEecHHHHHHHHHHHHHH-cCCcEEEEeCC
Confidence 4567777778899999999999999999888887641 23456677999999999888853 34332221111
Q ss_pred eeee------ccccCCCcEEEEEccHHHHHHH--hcCC-CCCCccEEEEeCCCcCCC-cchHHHH--HHHHHcccCCCCc
Q 001817 381 KVRL------EGMKGRDTRLMFCTTGILLRRL--LVDR-SLRGVTHVIVDEIHERGM-NEDFLLI--VLKELLPRRPELR 448 (1009)
Q Consensus 381 ~vr~------e~~~~~~t~Iiv~T~g~Ll~~L--~~~~-~l~~is~IIIDEaHeR~~-~~d~ll~--llk~ll~~~~~lk 448 (1009)
.... ........+|+|+||+.+.... ...- ...++++|||||||+.+- ..+|... .+..+....|+.+
T Consensus 85 ~~~~~~~~i~~~~~~~~~~il~~TPe~l~~~~~~~~~l~~~~~i~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~ 164 (470)
T TIGR00614 85 QSKEQQKNVLTDLKDGKIKLLYVTPEKCSASNRLLQTLEERKGITLIAVDEAHCISQWGHDFRPDYKALGSLKQKFPNVP 164 (470)
T ss_pred CCHHHHHHHHHHHhcCCCCEEEECHHHHcCchhHHHHHHhcCCcCEEEEeCCcccCccccccHHHHHHHHHHHHHcCCCc
Confidence 1000 1112345789999999875321 1111 467899999999996432 1222222 2333444567889
Q ss_pred EEEeccCCCHH---HHHhhhCC-CCeeccCCcccceeeEehhhHHHHhhhccCcccccccchhhhHHHHHHHHHHHHhhh
Q 001817 449 LILMSATLNAE---LFSSYFGG-APMLHIPGFTYPVRAYFLENILEMTRYRLNTYNQIDDYGQEKSWKMQKQALALRKRK 524 (1009)
Q Consensus 449 vIlmSATl~~~---~~~~yf~~-~pvi~i~g~~~pv~~~yl~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 524 (1009)
++++|||++.. .+.++++- .|.+...+...|. .+|.- ..
T Consensus 165 ~l~lTAT~~~~~~~di~~~l~l~~~~~~~~s~~r~n-l~~~v----------~~-------------------------- 207 (470)
T TIGR00614 165 IMALTATASPSVREDILRQLNLKNPQIFCTSFDRPN-LYYEV----------RR-------------------------- 207 (470)
T ss_pred eEEEecCCCHHHHHHHHHHcCCCCCcEEeCCCCCCC-cEEEE----------Ee--------------------------
Confidence 99999999764 34444431 1221111111110 00000 00
Q ss_pred hhHHHHHHHHHHHhhhcchhhhhhhccccCCCCCcchhhHHHHHHHHHhhcCCCcEEEEcCCHhHHHHHHHHHHcCCCCC
Q 001817 525 SSIASAVEDALEAADFREYSVQTQQSLSCWNPDSIGFNLIEHVLCHIVKKERPGAVLVFMTGWDDINSLKDQLQAHPLLG 604 (1009)
Q Consensus 525 ~~~~~~v~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~~~~i~~l~~~L~~~~~~~ 604 (1009)
...+.+..++..+.+......+||||+++++++.+++.|...
T Consensus 208 ----------------------------------~~~~~~~~l~~~l~~~~~~~~~IIF~~s~~~~e~la~~L~~~---- 249 (470)
T TIGR00614 208 ----------------------------------KTPKILEDLLRFIRKEFKGKSGIIYCPSRKKSEQVTASLQNL---- 249 (470)
T ss_pred ----------------------------------CCccHHHHHHHHHHHhcCCCceEEEECcHHHHHHHHHHHHhc----
Confidence 000011122222322334456799999999999999999876
Q ss_pred CCCCeEEEEecCCCCHHHHHhhcCCCCCCceEEEEecCccccccCCCCeeEEEeCCCCccccccCCCCCCcccccccCHH
Q 001817 605 DPSRVLLLACHGSMASSEQRLIFDKPEDGVRKIVLATNMAETSITINDVVFVIDCGKAKETSYDALNNTPCLLPSWISKA 684 (1009)
Q Consensus 605 ~~~~~~v~~lHs~l~~~er~~v~~~f~~G~~kVLVATniae~GIdIp~V~~VId~g~~k~~~yd~~~~~~~l~~~~iS~a 684 (1009)
++.+..+||+|+.++|..+++.|++|.++|||||+++++|||+|+|++||+++.|+ |..
T Consensus 250 ---g~~~~~~H~~l~~~eR~~i~~~F~~g~~~vLVaT~~~~~GID~p~V~~VI~~~~P~------------------s~~ 308 (470)
T TIGR00614 250 ---GIAAGAYHAGLEISARDDVHHKFQRDEIQVVVATVAFGMGINKPDVRFVIHYSLPK------------------SME 308 (470)
T ss_pred ---CCCeeEeeCCCCHHHHHHHHHHHHcCCCcEEEEechhhccCCcccceEEEEeCCCC------------------CHH
Confidence 67789999999999999999999999999999999999999999999999998887 888
Q ss_pred hHHhhhcccCCCC-CCcEEEecchhhhh
Q 001817 685 AARQRRGRAGRVQ-PGECYHLYPRYVYD 711 (1009)
Q Consensus 685 s~~QR~GRAGR~~-~G~c~~Lys~~~~~ 711 (1009)
+|.||+|||||.| +|.|+.+|+..+..
T Consensus 309 ~y~Qr~GRaGR~G~~~~~~~~~~~~d~~ 336 (470)
T TIGR00614 309 SYYQESGRAGRDGLPSECHLFYAPADIN 336 (470)
T ss_pred HHHhhhcCcCCCCCCceEEEEechhHHH
Confidence 9999999999995 69999999987654
No 41
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=7e-33 Score=306.94 Aligned_cols=378 Identities=20% Similarity=0.229 Sum_probs=239.2
Q ss_pred hcChhhHHHHHhhc--CCCCHHHHHHHHHHHHcCCeEEEEecCCCchhhhHHHHHHHHHHHHh----cCCceEEEechhH
Q 001817 282 QESPEGQKMLEFRR--SLPSYKERDALLKAISENQVVVVSGETGCGKTTQLPQYILESETEAA----RGAACSIICTQPR 355 (1009)
Q Consensus 282 ~~~~~~~~l~~~r~--~LPi~~~q~~il~~l~~~~~vII~apTGSGKTt~~~~~ile~~~~~~----~~~~~~IvvtqPr 355 (1009)
.-++++..-++.+. .-|+..|+++|... .++++++|-++||||||+++.+++.+.+.... +..+...+|++||
T Consensus 142 GL~~~lv~~L~~~m~i~~pTsVQkq~IP~l-L~grD~lV~aQTGSGKTLAYllPiVq~Lq~m~~ki~Rs~G~~ALVivPT 220 (708)
T KOG0348|consen 142 GLHPHLVSHLNTKMKISAPTSVQKQAIPVL-LEGRDALVRAQTGSGKTLAYLLPIVQSLQAMEPKIQRSDGPYALVIVPT 220 (708)
T ss_pred CCCHHHHHHHHHHhccCccchHhhcchhhh-hcCcceEEEcCCCCcccHHHHHHHHHHHHhcCccccccCCceEEEEech
Confidence 33444444444433 45788887777665 46999999999999999999999999886432 3455677777799
Q ss_pred HHHHHHHHHHHHHHhCCcccceeeeeeeeccccC------CCcEEEEEccHHHHHHHhcCC--CCCCccEEEEeCCC---
Q 001817 356 RISAMAVSERVAAERGEKLGESVGYKVRLEGMKG------RDTRLMFCTTGILLRRLLVDR--SLRGVTHVIVDEIH--- 424 (1009)
Q Consensus 356 R~La~qva~rva~e~~~~~g~~vGy~vr~e~~~~------~~t~Iiv~T~g~Ll~~L~~~~--~l~~is~IIIDEaH--- 424 (1009)
|+||.|+++.+.+.....--..-|+-+..|...+ .+.+|+|+|||+|++.|.+-. .++.+++||+||++
T Consensus 221 REL~~Q~y~~~qKLl~~~hWIVPg~lmGGEkkKSEKARLRKGiNILIgTPGRLvDHLknT~~i~~s~LRwlVlDEaDrll 300 (708)
T KOG0348|consen 221 RELALQIYETVQKLLKPFHWIVPGVLMGGEKKKSEKARLRKGINILIGTPGRLVDHLKNTKSIKFSRLRWLVLDEADRLL 300 (708)
T ss_pred HHHHHHHHHHHHHHhcCceEEeeceeecccccccHHHHHhcCceEEEcCchHHHHHHhccchheeeeeeEEEecchhHHH
Confidence 9999999999988775433333345555665554 468999999999999998866 67889999999999
Q ss_pred cCCCcchHHHHHHHHH----cccCC------CCcEEEeccCCC--HHHHHhhhCCCCeeccCCcccceeeEehhhHHHHh
Q 001817 425 ERGMNEDFLLIVLKEL----LPRRP------ELRLILMSATLN--AELFSSYFGGAPMLHIPGFTYPVRAYFLENILEMT 492 (1009)
Q Consensus 425 eR~~~~d~ll~llk~l----l~~~~------~lkvIlmSATl~--~~~~~~yf~~~pvi~i~g~~~pv~~~yl~~i~~~~ 492 (1009)
+.|..-|+ -.+++.+ ...+. ..+-+++|||+. ...+++.--..|+ -+. ++......
T Consensus 301 eLGfekdi-t~Il~~v~~~~~~e~~~~~lp~q~q~mLlSATLtd~V~rLa~~sLkDpv----------~I~-ld~s~~~~ 368 (708)
T KOG0348|consen 301 ELGFEKDI-TQILKAVHSIQNAECKDPKLPHQLQNMLLSATLTDGVNRLADLSLKDPV----------YIS-LDKSHSQL 368 (708)
T ss_pred hccchhhH-HHHHHHHhhccchhcccccccHHHHhHhhhhhhHHHHHHHhhccccCce----------eee-ccchhhhc
Confidence 33444442 1222332 11112 367789999994 3344432111111 111 11000000
Q ss_pred hhccCcccccccc-hhhhHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhcchhhhhhhccccCCCCCcchhhHHHHHHHH
Q 001817 493 RYRLNTYNQIDDY-GQEKSWKMQKQALALRKRKSSIASAVEDALEAADFREYSVQTQQSLSCWNPDSIGFNLIEHVLCHI 571 (1009)
Q Consensus 493 ~~~~~~~~~i~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i 571 (1009)
.-......++++- ..+.. ..-.+.+.+.+.+ ...|.....--+..+|...
T Consensus 369 ~p~~~a~~ev~~~~~~~~l------------~~~~iPeqL~qry-----------------~vVPpKLRLV~Laa~L~~~ 419 (708)
T KOG0348|consen 369 NPKDKAVQEVDDGPAGDKL------------DSFAIPEQLLQRY-----------------TVVPPKLRLVALAALLLNK 419 (708)
T ss_pred CcchhhhhhcCCccccccc------------ccccCcHHhhhce-----------------EecCCchhHHHHHHHHHHH
Confidence 0000000000000 00000 0000000010000 0011222222234566677
Q ss_pred HhhcCCCcEEEEcCCHhHHHHHHHHHHcCCCC------C---------CCCCeEEEEecCCCCHHHHHhhcCCCCCCceE
Q 001817 572 VKKERPGAVLVFMTGWDDINSLKDQLQAHPLL------G---------DPSRVLLLACHGSMASSEQRLIFDKPEDGVRK 636 (1009)
Q Consensus 572 ~~~~~~g~iLVFl~~~~~i~~l~~~L~~~~~~------~---------~~~~~~v~~lHs~l~~~er~~v~~~f~~G~~k 636 (1009)
++.....+++||+.+.+.++.=++++.....- + -..+..++-+||+|++++|..+|+.|.....-
T Consensus 420 ~k~~~~qk~iVF~S~~d~VeFHy~lf~~~l~~~~e~~s~~~~s~g~~~l~~~~k~~rLHGsm~QeeRts~f~~Fs~~~~~ 499 (708)
T KOG0348|consen 420 VKFEEKQKMIVFFSCSDSVEFHYSLFSEALLSHLEGSSGAPDSEGLPPLFMDLKFYRLHGSMEQEERTSVFQEFSHSRRA 499 (708)
T ss_pred hhhhhhceeEEEEechhHHHHHHHHHHhhhhcccccccCCcccCCChhhhhcceEEEecCchhHHHHHHHHHhhccccce
Confidence 77777779999999999999888877642110 0 01256789999999999999999999999999
Q ss_pred EEEecCccccccCCCCeeEEEeCCCCccccccCCCCCCcccccccCHHhHHhhhcccCCCCC-CcEEEec--chhhhhhh
Q 001817 637 IVLATNMAETSITINDVVFVIDCGKAKETSYDALNNTPCLLPSWISKAAARQRRGRAGRVQP-GECYHLY--PRYVYDAF 713 (1009)
Q Consensus 637 VLVATniae~GIdIp~V~~VId~g~~k~~~yd~~~~~~~l~~~~iS~as~~QR~GRAGR~~~-G~c~~Ly--s~~~~~~l 713 (1009)
|++||++|++|+|+|+|.+||.++.|. |.++|+||+||+.|.|. |....+. ++..|-+.
T Consensus 500 VLLcTDVAaRGLDlP~V~~vVQYd~P~------------------s~adylHRvGRTARaG~kG~alLfL~P~Eaey~~~ 561 (708)
T KOG0348|consen 500 VLLCTDVAARGLDLPHVGLVVQYDPPF------------------STADYLHRVGRTARAGEKGEALLFLLPSEAEYVNY 561 (708)
T ss_pred EEEehhhhhccCCCCCcCeEEEeCCCC------------------CHHHHHHHhhhhhhccCCCceEEEecccHHHHHHH
Confidence 999999999999999999999955543 88999999999999964 7765554 34455554
Q ss_pred ccCCCc
Q 001817 714 ADYQLP 719 (1009)
Q Consensus 714 ~~~~~P 719 (1009)
.+...+
T Consensus 562 l~~~~~ 567 (708)
T KOG0348|consen 562 LKKHHI 567 (708)
T ss_pred HHhhcc
Confidence 433333
No 42
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4.2e-33 Score=296.24 Aligned_cols=320 Identities=19% Similarity=0.303 Sum_probs=225.2
Q ss_pred CCCCHHHHHHHHHHHHcCCeEEEEecCCCchhhhHHHHHHHHHHHHhcCCceEEEechhHHHHHHHHHHHHHHHhCCccc
Q 001817 296 SLPSYKERDALLKAISENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERGEKLG 375 (1009)
Q Consensus 296 ~LPi~~~q~~il~~l~~~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~IvvtqPrR~La~qva~rva~e~~~~~g 375 (1009)
.-|+..|+..| ..|.+|+++|-+|.||||||+++.+++++.+.+...| .-.+|+.|||+||.|+++++.. +|...+
T Consensus 28 ~~pTpiQ~~cI-pkILeGrdcig~AkTGsGKT~AFaLPil~rLsedP~g--iFalvlTPTrELA~QiaEQF~a-lGk~l~ 103 (442)
T KOG0340|consen 28 KKPTPIQQACI-PKILEGRDCIGCAKTGSGKTAAFALPILNRLSEDPYG--IFALVLTPTRELALQIAEQFIA-LGKLLN 103 (442)
T ss_pred CCCCchHhhhh-HHHhcccccccccccCCCcchhhhHHHHHhhccCCCc--ceEEEecchHHHHHHHHHHHHH-hccccc
Confidence 34666665555 5577999999999999999999999999988664443 3455666999999999999854 333333
Q ss_pred ----ceeee--eeeeccccCCCcEEEEEccHHHHHHHhcCC-----CCCCccEEEEeCCCcCCCcchHHHHHHHHHcc-c
Q 001817 376 ----ESVGY--KVRLEGMKGRDTRLMFCTTGILLRRLLVDR-----SLRGVTHVIVDEIHERGMNEDFLLIVLKELLP-R 443 (1009)
Q Consensus 376 ----~~vGy--~vr~e~~~~~~t~Iiv~T~g~Ll~~L~~~~-----~l~~is~IIIDEaHeR~~~~d~ll~llk~ll~-~ 443 (1009)
..||. .+........+++++++|||++...+.+++ .++++.++|+|||+ |-+..+|-.. |+.+.. .
T Consensus 104 lK~~vivGG~d~i~qa~~L~~rPHvVvatPGRlad~l~sn~~~~~~~~~rlkflVlDEAD-rvL~~~f~d~-L~~i~e~l 181 (442)
T KOG0340|consen 104 LKVSVIVGGTDMIMQAAILSDRPHVVVATPGRLADHLSSNLGVCSWIFQRLKFLVLDEAD-RVLAGCFPDI-LEGIEECL 181 (442)
T ss_pred ceEEEEEccHHHhhhhhhcccCCCeEecCccccccccccCCccchhhhhceeeEEecchh-hhhccchhhH-HhhhhccC
Confidence 33441 222233445789999999999999998774 58899999999999 5555554433 333333 3
Q ss_pred CCCCcEEEeccCCCHHHHHhhhCCCCeeccCCcccceeeEehhhHHHHhhhccCcccccccchhhhHHHHHHHHHHHHhh
Q 001817 444 RPELRLILMSATLNAELFSSYFGGAPMLHIPGFTYPVRAYFLENILEMTRYRLNTYNQIDDYGQEKSWKMQKQALALRKR 523 (1009)
Q Consensus 444 ~~~lkvIlmSATl~~~~~~~yf~~~pvi~i~g~~~pv~~~yl~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 523 (1009)
.+..|.+++|||++.. +...|+ +|+-.- ..|-++. .++ ..+
T Consensus 182 P~~RQtLlfSATitd~-i~ql~~-~~i~k~--~a~~~e~--~~~------------vst--------------------- 222 (442)
T KOG0340|consen 182 PKPRQTLLFSATITDT-IKQLFG-CPITKS--IAFELEV--IDG------------VST--------------------- 222 (442)
T ss_pred CCccceEEEEeehhhH-HHHhhc-CCcccc--cceEEec--cCC------------CCc---------------------
Confidence 3345899999999533 233332 221100 0110000 000 000
Q ss_pred hhhHHHHHHHHHHHhhhcchhhhhhhccccCCCCCcchhhHHHHHHHHHh---hcCCCcEEEEcCCHhHHHHHHHHHHcC
Q 001817 524 KSSIASAVEDALEAADFREYSVQTQQSLSCWNPDSIGFNLIEHVLCHIVK---KERPGAVLVFMTGWDDINSLKDQLQAH 600 (1009)
Q Consensus 524 ~~~~~~~v~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~---~~~~g~iLVFl~~~~~i~~l~~~L~~~ 600 (1009)
.+.+.+.+. ....+.+...+.++++ +++.+.++||+++..+++.++..|+..
T Consensus 223 ----vetL~q~yI---------------------~~~~~vkdaYLv~~Lr~~~~~~~~simIFvnttr~cQ~l~~~l~~l 277 (442)
T KOG0340|consen 223 ----VETLYQGYI---------------------LVSIDVKDAYLVHLLRDFENKENGSIMIFVNTTRECQLLSMTLKNL 277 (442)
T ss_pred ----hhhhhhhee---------------------ecchhhhHHHHHHHHhhhhhccCceEEEEeehhHHHHHHHHHHhhh
Confidence 000000000 0011122223444443 335789999999999999999999986
Q ss_pred CCCCCCCCeEEEEecCCCCHHHHHhhcCCCCCCceEEEEecCccccccCCCCeeEEEeCCCCccccccCCCCCCcccccc
Q 001817 601 PLLGDPSRVLLLACHGSMASSEQRLIFDKPEDGVRKIVLATNMAETSITINDVVFVIDCGKAKETSYDALNNTPCLLPSW 680 (1009)
Q Consensus 601 ~~~~~~~~~~v~~lHs~l~~~er~~v~~~f~~G~~kVLVATniae~GIdIp~V~~VId~g~~k~~~yd~~~~~~~l~~~~ 680 (1009)
.+.+..+||.|++.+|-..+.+|+++..+|||||++|++|+|||.|..|||.+.|+
T Consensus 278 -------e~r~~~lHs~m~Q~eR~~aLsrFrs~~~~iliaTDVAsRGLDIP~V~LVvN~diPr----------------- 333 (442)
T KOG0340|consen 278 -------EVRVVSLHSQMPQKERLAALSRFRSNAARILIATDVASRGLDIPTVELVVNHDIPR----------------- 333 (442)
T ss_pred -------ceeeeehhhcchHHHHHHHHHHHhhcCccEEEEechhhcCCCCCceeEEEecCCCC-----------------
Confidence 78899999999999999999999999999999999999999999999999988887
Q ss_pred cCHHhHHhhhcccCCCCC-CcEEEecchhhh
Q 001817 681 ISKAAARQRRGRAGRVQP-GECYHLYPRYVY 710 (1009)
Q Consensus 681 iS~as~~QR~GRAGR~~~-G~c~~Lys~~~~ 710 (1009)
.+..|+||.||+.|.|. |..+.+++..+.
T Consensus 334 -~P~~yiHRvGRtARAGR~G~aiSivt~rDv 363 (442)
T KOG0340|consen 334 -DPKDYIHRVGRTARAGRKGMAISIVTQRDV 363 (442)
T ss_pred -CHHHHHHhhcchhcccCCcceEEEechhhH
Confidence 66789999999999964 899999886543
No 43
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=100.00 E-value=7.1e-33 Score=336.72 Aligned_cols=305 Identities=19% Similarity=0.261 Sum_probs=212.1
Q ss_pred HHHHHHHHHHHHcCCeEEEEecCCCchhhhHHHHHHHHHHHHhcCCceEEEechhHHHHHHHHHHHHHHHhCCcccceee
Q 001817 300 YKERDALLKAISENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERGEKLGESVG 379 (1009)
Q Consensus 300 ~~~q~~il~~l~~~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~IvvtqPrR~La~qva~rva~e~~~~~g~~vG 379 (1009)
...|+++++++.+++++++++|||||||+++.++++.. .+.++|++|+++|+.|..+.+.. .|.......+
T Consensus 27 r~~Q~~ai~~il~g~dvlv~apTGsGKTl~y~lpal~~--------~g~tlVisPl~sL~~dqv~~l~~-~gi~~~~~~s 97 (607)
T PRK11057 27 RPGQQEIIDAVLSGRDCLVVMPTGGGKSLCYQIPALVL--------DGLTLVVSPLISLMKDQVDQLLA-NGVAAACLNS 97 (607)
T ss_pred CHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHc--------CCCEEEEecHHHHHHHHHHHHHH-cCCcEEEEcC
Confidence 35677788888899999999999999999888877641 23566777999999999888754 3333221111
Q ss_pred eeee------eccccCCCcEEEEEccHHHHHHH-hcCCCCCCccEEEEeCCCcCCCc-chHH--HHHHHHHcccCCCCcE
Q 001817 380 YKVR------LEGMKGRDTRLMFCTTGILLRRL-LVDRSLRGVTHVIVDEIHERGMN-EDFL--LIVLKELLPRRPELRL 449 (1009)
Q Consensus 380 y~vr------~e~~~~~~t~Iiv~T~g~Ll~~L-~~~~~l~~is~IIIDEaHeR~~~-~d~l--l~llk~ll~~~~~lkv 449 (1009)
-... .........+++|+||+.++... .......++++|||||||+..-. .+|. ...+..+....|+.++
T Consensus 98 ~~~~~~~~~~~~~~~~g~~~il~~tPe~l~~~~~~~~l~~~~l~~iVIDEaH~i~~~G~~fr~~y~~L~~l~~~~p~~~~ 177 (607)
T PRK11057 98 TQTREQQLEVMAGCRTGQIKLLYIAPERLMMDNFLEHLAHWNPALLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPF 177 (607)
T ss_pred CCCHHHHHHHHHHHhCCCCcEEEEChHHhcChHHHHHHhhCCCCEEEEeCccccccccCcccHHHHHHHHHHHhCCCCcE
Confidence 1000 11122345789999999987422 22223457899999999974321 2222 2234444455688899
Q ss_pred EEeccCCCHHH---HHhhhC-CCCeeccCCcccceeeEehhhHHHHhhhccCcccccccchhhhHHHHHHHHHHHHhhhh
Q 001817 450 ILMSATLNAEL---FSSYFG-GAPMLHIPGFTYPVRAYFLENILEMTRYRLNTYNQIDDYGQEKSWKMQKQALALRKRKS 525 (1009)
Q Consensus 450 IlmSATl~~~~---~~~yf~-~~pvi~i~g~~~pv~~~yl~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 525 (1009)
++||||++... +.+.++ ..|.+.+.+...|. ..|. . ..
T Consensus 178 v~lTAT~~~~~~~di~~~l~l~~~~~~~~~~~r~n-l~~~----------v-----~~---------------------- 219 (607)
T PRK11057 178 MALTATADDTTRQDIVRLLGLNDPLIQISSFDRPN-IRYT----------L-----VE---------------------- 219 (607)
T ss_pred EEEecCCChhHHHHHHHHhCCCCeEEEECCCCCCc-ceee----------e-----ee----------------------
Confidence 99999996543 333332 12222221111110 0000 0 00
Q ss_pred hHHHHHHHHHHHhhhcchhhhhhhccccCCCCCcchhhHHHHHHHHHhhcCCCcEEEEcCCHhHHHHHHHHHHcCCCCCC
Q 001817 526 SIASAVEDALEAADFREYSVQTQQSLSCWNPDSIGFNLIEHVLCHIVKKERPGAVLVFMTGWDDINSLKDQLQAHPLLGD 605 (1009)
Q Consensus 526 ~~~~~v~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~~~~i~~l~~~L~~~~~~~~ 605 (1009)
....... +..++.....+++||||+++++++.+++.|...
T Consensus 220 ----------------------------------~~~~~~~-l~~~l~~~~~~~~IIFc~tr~~~e~la~~L~~~----- 259 (607)
T PRK11057 220 ----------------------------------KFKPLDQ-LMRYVQEQRGKSGIIYCNSRAKVEDTAARLQSR----- 259 (607)
T ss_pred ----------------------------------ccchHHH-HHHHHHhcCCCCEEEEECcHHHHHHHHHHHHhC-----
Confidence 0000111 222233345678999999999999999999886
Q ss_pred CCCeEEEEecCCCCHHHHHhhcCCCCCCceEEEEecCccccccCCCCeeEEEeCCCCccccccCCCCCCcccccccCHHh
Q 001817 606 PSRVLLLACHGSMASSEQRLIFDKPEDGVRKIVLATNMAETSITINDVVFVIDCGKAKETSYDALNNTPCLLPSWISKAA 685 (1009)
Q Consensus 606 ~~~~~v~~lHs~l~~~er~~v~~~f~~G~~kVLVATniae~GIdIp~V~~VId~g~~k~~~yd~~~~~~~l~~~~iS~as 685 (1009)
++.+..+||+|+.++|..+++.|+.|.++|||||+++++|||+|+|++||+++.|+ |..+
T Consensus 260 --g~~v~~~Ha~l~~~~R~~i~~~F~~g~~~VLVaT~a~~~GIDip~V~~VI~~d~P~------------------s~~~ 319 (607)
T PRK11057 260 --GISAAAYHAGLDNDVRADVQEAFQRDDLQIVVATVAFGMGINKPNVRFVVHFDIPR------------------NIES 319 (607)
T ss_pred --CCCEEEecCCCCHHHHHHHHHHHHCCCCCEEEEechhhccCCCCCcCEEEEeCCCC------------------CHHH
Confidence 67799999999999999999999999999999999999999999999999988887 8889
Q ss_pred HHhhhcccCCCC-CCcEEEecchhhhh
Q 001817 686 ARQRRGRAGRVQ-PGECYHLYPRYVYD 711 (1009)
Q Consensus 686 ~~QR~GRAGR~~-~G~c~~Lys~~~~~ 711 (1009)
|.||+|||||.+ +|.|+.+|+..+..
T Consensus 320 y~Qr~GRaGR~G~~~~~ill~~~~d~~ 346 (607)
T PRK11057 320 YYQETGRAGRDGLPAEAMLFYDPADMA 346 (607)
T ss_pred HHHHhhhccCCCCCceEEEEeCHHHHH
Confidence 999999999996 69999999987654
No 44
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=100.00 E-value=1.8e-32 Score=335.23 Aligned_cols=308 Identities=19% Similarity=0.165 Sum_probs=209.4
Q ss_pred CHHHHHHHHHHHHcCCeEEEEecCCCchhhhHHHHHHHHHHHHhcCCceEEEechhHHHHHHHHHHHHHHHhCCccccee
Q 001817 299 SYKERDALLKAISENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERGEKLGESV 378 (1009)
Q Consensus 299 i~~~q~~il~~l~~~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~IvvtqPrR~La~qva~rva~e~~~~~g~~v 378 (1009)
....|.+++.++..++++++++|||+|||+++.++++.. .+.+||+.|+++|+.+....+.. .|.......
T Consensus 461 FRp~Q~eaI~aiL~GrDVLVimPTGSGKSLcYQLPAL~~--------~GiTLVISPLiSLmqDQV~~L~~-~GI~Aa~L~ 531 (1195)
T PLN03137 461 FRPNQREIINATMSGYDVFVLMPTGGGKSLTYQLPALIC--------PGITLVISPLVSLIQDQIMNLLQ-ANIPAASLS 531 (1195)
T ss_pred CCHHHHHHHHHHHcCCCEEEEcCCCccHHHHHHHHHHHc--------CCcEEEEeCHHHHHHHHHHHHHh-CCCeEEEEE
Confidence 445678888889999999999999999999999988742 23577777999999854444432 232222222
Q ss_pred eeeeee------ccc--cCCCcEEEEEccHHHHH------HHhcCCCCCCccEEEEeCCCcCC-CcchHHHHH--HHHHc
Q 001817 379 GYKVRL------EGM--KGRDTRLMFCTTGILLR------RLLVDRSLRGVTHVIVDEIHERG-MNEDFLLIV--LKELL 441 (1009)
Q Consensus 379 Gy~vr~------e~~--~~~~t~Iiv~T~g~Ll~------~L~~~~~l~~is~IIIDEaHeR~-~~~d~ll~l--lk~ll 441 (1009)
|..... ... .....+|+|+||++|.. .+..-.....+++|||||||+.. +..||...+ +..+.
T Consensus 532 s~~s~~eq~~ilr~l~s~~g~~~ILyvTPERL~~~d~ll~~L~~L~~~~~LslIVIDEAHcVSqWGhDFRpdYr~L~~Lr 611 (1195)
T PLN03137 532 AGMEWAEQLEILQELSSEYSKYKLLYVTPEKVAKSDSLLRHLENLNSRGLLARFVIDEAHCVSQWGHDFRPDYQGLGILK 611 (1195)
T ss_pred CCCCHHHHHHHHHHHHhcCCCCCEEEEChHHhhcchHHHHHHHhhhhccccceeccCcchhhhhcccchHHHHHHHHHHH
Confidence 210000 001 11457999999998752 22211134568999999999742 223443322 22344
Q ss_pred ccCCCCcEEEeccCCCHH---HHHhhhCCCC-eeccCCcccceeeEehhhHHHHhhhccCcccccccchhhhHHHHHHHH
Q 001817 442 PRRPELRLILMSATLNAE---LFSSYFGGAP-MLHIPGFTYPVRAYFLENILEMTRYRLNTYNQIDDYGQEKSWKMQKQA 517 (1009)
Q Consensus 442 ~~~~~lkvIlmSATl~~~---~~~~yf~~~p-vi~i~g~~~pv~~~yl~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 517 (1009)
...++.+++++|||++.. .+.+.++... ++...+..-| ..+|.- .+
T Consensus 612 ~~fp~vPilALTATAT~~V~eDI~~~L~l~~~~vfr~Sf~Rp-NL~y~V----------v~------------------- 661 (1195)
T PLN03137 612 QKFPNIPVLALTATATASVKEDVVQALGLVNCVVFRQSFNRP-NLWYSV----------VP------------------- 661 (1195)
T ss_pred HhCCCCCeEEEEecCCHHHHHHHHHHcCCCCcEEeecccCcc-ceEEEE----------ec-------------------
Confidence 456788899999999654 4445554221 1111111111 111100 00
Q ss_pred HHHHhhhhhHHHHHHHHHHHhhhcchhhhhhhccccCCCCCcchhhHHHHHHHHHhhcCCCcEEEEcCCHhHHHHHHHHH
Q 001817 518 LALRKRKSSIASAVEDALEAADFREYSVQTQQSLSCWNPDSIGFNLIEHVLCHIVKKERPGAVLVFMTGWDDINSLKDQL 597 (1009)
Q Consensus 518 ~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~~~~i~~l~~~L 597 (1009)
+ .. .....+...+......+..||||.++.+++.+++.|
T Consensus 662 ----k-~k------------------------------------k~le~L~~~I~~~~~~esgIIYC~SRke~E~LAe~L 700 (1195)
T PLN03137 662 ----K-TK------------------------------------KCLEDIDKFIKENHFDECGIIYCLSRMDCEKVAERL 700 (1195)
T ss_pred ----c-ch------------------------------------hHHHHHHHHHHhcccCCCceeEeCchhHHHHHHHHH
Confidence 0 00 000011111212223467899999999999999999
Q ss_pred HcCCCCCCCCCeEEEEecCCCCHHHHHhhcCCCCCCceEEEEecCccccccCCCCeeEEEeCCCCccccccCCCCCCccc
Q 001817 598 QAHPLLGDPSRVLLLACHGSMASSEQRLIFDKPEDGVRKIVLATNMAETSITINDVVFVIDCGKAKETSYDALNNTPCLL 677 (1009)
Q Consensus 598 ~~~~~~~~~~~~~v~~lHs~l~~~er~~v~~~f~~G~~kVLVATniae~GIdIp~V~~VId~g~~k~~~yd~~~~~~~l~ 677 (1009)
... ++.+.++||+|++++|..+++.|..|+++|||||+++++|||+|+|++||++++|+
T Consensus 701 ~~~-------Gika~~YHAGLs~eeR~~vqe~F~~Gei~VLVATdAFGMGIDkPDVR~VIHydlPk-------------- 759 (1195)
T PLN03137 701 QEF-------GHKAAFYHGSMDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPK-------------- 759 (1195)
T ss_pred HHC-------CCCeeeeeCCCCHHHHHHHHHHHhcCCCcEEEEechhhcCCCccCCcEEEEcCCCC--------------
Confidence 876 67799999999999999999999999999999999999999999999999999998
Q ss_pred ccccCHHhHHhhhcccCCCC-CCcEEEecchhhhh
Q 001817 678 PSWISKAAARQRRGRAGRVQ-PGECYHLYPRYVYD 711 (1009)
Q Consensus 678 ~~~iS~as~~QR~GRAGR~~-~G~c~~Lys~~~~~ 711 (1009)
|..+|.||+|||||.| +|.|+.+|+..++.
T Consensus 760 ----SiEsYyQriGRAGRDG~~g~cILlys~~D~~ 790 (1195)
T PLN03137 760 ----SIEGYHQECGRAGRDGQRSSCVLYYSYSDYI 790 (1195)
T ss_pred ----CHHHHHhhhcccCCCCCCceEEEEecHHHHH
Confidence 8889999999999995 69999999887664
No 45
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4.2e-33 Score=313.61 Aligned_cols=318 Identities=19% Similarity=0.182 Sum_probs=225.0
Q ss_pred HhhcCCCCHHHHHHHHHHHHcCCeEEEEecCCCchhhhHHHHHHHHHHHHhc--------CCceEEEechhHHHHHHHHH
Q 001817 292 EFRRSLPSYKERDALLKAISENQVVVVSGETGCGKTTQLPQYILESETEAAR--------GAACSIICTQPRRISAMAVS 363 (1009)
Q Consensus 292 ~~r~~LPi~~~q~~il~~l~~~~~vII~apTGSGKTt~~~~~ile~~~~~~~--------~~~~~IvvtqPrR~La~qva 363 (1009)
.....-|...||..| ..+..++++++||+||||||.++++++++.++..+. +..+.+++++|||+||.|++
T Consensus 91 ~~~~~~ptpvQk~si-p~i~~Grdl~acAqTGsGKT~aFLiPii~~~~~~~~~~~~~~~~~~~P~~lIlapTReL~~Qi~ 169 (482)
T KOG0335|consen 91 RSGYTKPTPVQKYSI-PIISGGRDLMACAQTGSGKTAAFLIPIISYLLDEGPEDRGESGGGVYPRALILAPTRELVDQIY 169 (482)
T ss_pred cccccCCCcceeecc-ceeecCCceEEEccCCCcchHHHHHHHHHHHHhcCcccCcccCCCCCCceEEEeCcHHHhhHHH
Confidence 344566777776665 557899999999999999999999999999886532 12467788889999999999
Q ss_pred HHHHHHhCCcccce-eeeeeee----ccccCCCcEEEEEccHHHHHHHhcCC-CCCCccEEEEeCCCcCCCc-chHHHHH
Q 001817 364 ERVAAERGEKLGES-VGYKVRL----EGMKGRDTRLMFCTTGILLRRLLVDR-SLRGVTHVIVDEIHERGMN-EDFLLIV 436 (1009)
Q Consensus 364 ~rva~e~~~~~g~~-vGy~vr~----e~~~~~~t~Iiv~T~g~Ll~~L~~~~-~l~~is~IIIDEaHeR~~~-~d~ll~l 436 (1009)
++..+..+...-.. ++|.-+. .......++|+|||||.|.+.+.... .|.++.++|+|||+. .++ ..|...+
T Consensus 170 nea~k~~~~s~~~~~~~ygg~~~~~q~~~~~~gcdIlvaTpGrL~d~~e~g~i~l~~~k~~vLDEADr-MlD~mgF~p~I 248 (482)
T KOG0335|consen 170 NEARKFSYLSGMKSVVVYGGTDLGAQLRFIKRGCDILVATPGRLKDLIERGKISLDNCKFLVLDEADR-MLDEMGFEPQI 248 (482)
T ss_pred HHHHhhcccccceeeeeeCCcchhhhhhhhccCccEEEecCchhhhhhhcceeehhhCcEEEecchHH-hhhhccccccH
Confidence 99988765443222 2233211 11233679999999999999988776 899999999999994 355 5554444
Q ss_pred HHHHccc----CCCCcEEEeccCCCHH--HHHhhhCCC-Cee-cc--CCcccceeeEehhhHHHHhhhccCcccccccch
Q 001817 437 LKELLPR----RPELRLILMSATLNAE--LFSSYFGGA-PML-HI--PGFTYPVRAYFLENILEMTRYRLNTYNQIDDYG 506 (1009)
Q Consensus 437 lk~ll~~----~~~lkvIlmSATl~~~--~~~~yf~~~-pvi-~i--~g~~~pv~~~yl~~i~~~~~~~~~~~~~i~~~~ 506 (1009)
-+.+... ....|.+++|||.+.+ .+..+|-.. .++ .+ -|..-.-...
T Consensus 249 r~iv~~~~~~~~~~~qt~mFSAtfp~~iq~l~~~fl~~~yi~laV~rvg~~~~ni~q----------------------- 305 (482)
T KOG0335|consen 249 RKIVEQLGMPPKNNRQTLLFSATFPKEIQRLAADFLKDNYIFLAVGRVGSTSENITQ----------------------- 305 (482)
T ss_pred HHHhcccCCCCccceeEEEEeccCChhhhhhHHHHhhccceEEEEeeecccccccee-----------------------
Confidence 3333322 2367899999998543 344444211 000 00 0000000000
Q ss_pred hhhHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhcchhhhhhhccccCCCCCcchhhHHHHHHHHHhhc---CCC-----
Q 001817 507 QEKSWKMQKQALALRKRKSSIASAVEDALEAADFREYSVQTQQSLSCWNPDSIGFNLIEHVLCHIVKKE---RPG----- 578 (1009)
Q Consensus 507 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~~---~~g----- 578 (1009)
-.......+.+..++..+.... ..+
T Consensus 306 -----------------------------------------------~i~~V~~~~kr~~Lldll~~~~~~~~~~~~~~e 338 (482)
T KOG0335|consen 306 -----------------------------------------------KILFVNEMEKRSKLLDLLNKDDGPPSDGEPKWE 338 (482)
T ss_pred -----------------------------------------------EeeeecchhhHHHHHHHhhcccCCcccCCcccc
Confidence 0000001111122222222111 233
Q ss_pred cEEEEcCCHhHHHHHHHHHHcCCCCCCCCCeEEEEecCCCCHHHHHhhcCCCCCCceEEEEecCccccccCCCCeeEEEe
Q 001817 579 AVLVFMTGWDDINSLKDQLQAHPLLGDPSRVLLLACHGSMASSEQRLIFDKPEDGVRKIVLATNMAETSITINDVVFVID 658 (1009)
Q Consensus 579 ~iLVFl~~~~~i~~l~~~L~~~~~~~~~~~~~v~~lHs~l~~~er~~v~~~f~~G~~kVLVATniae~GIdIp~V~~VId 658 (1009)
.++|||.+++.+..++..|... ++....+||..++.+|.+.+..|++|...|+|||+|+++|+|||+|++||+
T Consensus 339 ~tlvFvEt~~~~d~l~~~l~~~-------~~~~~sIhg~~tq~er~~al~~Fr~g~~pvlVaT~VaaRGlDi~~V~hVIn 411 (482)
T KOG0335|consen 339 KTLVFVETKRGADELAAFLSSN-------GYPAKSIHGDRTQIEREQALNDFRNGKAPVLVATNVAARGLDIPNVKHVIN 411 (482)
T ss_pred eEEEEeeccchhhHHHHHHhcC-------CCCceeecchhhhhHHHHHHHHhhcCCcceEEEehhhhcCCCCCCCceeEE
Confidence 8999999999999999999987 677889999999999999999999999999999999999999999999999
Q ss_pred CCCCccccccCCCCCCcccccccCHHhHHhhhcccCCCCC-CcEEEecc
Q 001817 659 CGKAKETSYDALNNTPCLLPSWISKAAARQRRGRAGRVQP-GECYHLYP 706 (1009)
Q Consensus 659 ~g~~k~~~yd~~~~~~~l~~~~iS~as~~QR~GRAGR~~~-G~c~~Lys 706 (1009)
+++|. .-.+|+||+||+||.+. |....|+.
T Consensus 412 yDmP~------------------d~d~YvHRIGRTGR~Gn~G~atsf~n 442 (482)
T KOG0335|consen 412 YDMPA------------------DIDDYVHRIGRTGRVGNGGRATSFFN 442 (482)
T ss_pred eecCc------------------chhhHHHhccccccCCCCceeEEEec
Confidence 77776 44578899999999975 89999887
No 46
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=100.00 E-value=7.7e-32 Score=324.36 Aligned_cols=387 Identities=21% Similarity=0.257 Sum_probs=267.3
Q ss_pred hhhHHHHHhhcCCCCHHHHHHHHHHHHcCCeEEEEecCCCchhhhHHHHHHHHHHHHhc---CCceEEEechhHHHHHHH
Q 001817 285 PEGQKMLEFRRSLPSYKERDALLKAISENQVVVVSGETGCGKTTQLPQYILESETEAAR---GAACSIICTQPRRISAMA 361 (1009)
Q Consensus 285 ~~~~~l~~~r~~LPi~~~q~~il~~l~~~~~vII~apTGSGKTt~~~~~ile~~~~~~~---~~~~~IvvtqPrR~La~q 361 (1009)
+..++++..+..-|...|..++ +.+.+|++++|+||||||||.++.++++..+...+. ..+..++++.|-|+|+..
T Consensus 10 ~~v~~~~~~~~~~~t~~Q~~a~-~~i~~G~nvLiiAPTGsGKTeAAfLpil~~l~~~~~~~~~~~i~~lYIsPLkALn~D 88 (814)
T COG1201 10 PRVREWFKRKFTSLTPPQRYAI-PEIHSGENVLIIAPTGSGKTEAAFLPVINELLSLGKGKLEDGIYALYISPLKALNND 88 (814)
T ss_pred HHHHHHHHHhcCCCCHHHHHHH-HHHhCCCceEEEcCCCCChHHHHHHHHHHHHHhccCCCCCCceEEEEeCcHHHHHHH
Confidence 3445566666677887776655 556799999999999999999999999999987632 234789999999999999
Q ss_pred HHHHHHH---HhCCcccceeeeeeeecc--ccCCCcEEEEEccHHHHHHHhcCC---CCCCccEEEEeCCCc-----CCC
Q 001817 362 VSERVAA---ERGEKLGESVGYKVRLEG--MKGRDTRLMFCTTGILLRRLLVDR---SLRGVTHVIVDEIHE-----RGM 428 (1009)
Q Consensus 362 va~rva~---e~~~~~g~~vGy~vr~e~--~~~~~t~Iiv~T~g~Ll~~L~~~~---~l~~is~IIIDEaHe-----R~~ 428 (1009)
+-.++.. ++|..+....|...+.+. .....++|+++||+.|.-.|.+.. .|.++.+|||||+|+ ||.
T Consensus 89 i~~rL~~~~~~~G~~v~vRhGDT~~~er~r~~~~PPdILiTTPEsL~lll~~~~~r~~l~~vr~VIVDEiHel~~sKRG~ 168 (814)
T COG1201 89 IRRRLEEPLRELGIEVAVRHGDTPQSEKQKMLKNPPHILITTPESLAILLNSPKFRELLRDVRYVIVDEIHALAESKRGV 168 (814)
T ss_pred HHHHHHHHHHHcCCccceecCCCChHHhhhccCCCCcEEEeChhHHHHHhcCHHHHHHhcCCcEEEeehhhhhhccccch
Confidence 9988854 334444333343222222 123568999999999877666543 799999999999995 777
Q ss_pred cchHHHHHHHHHcccCCCCcEEEeccCC-CHHHHHhhhCCC----CeeccCCc-ccceeeEehhhHHHHhhhccCccccc
Q 001817 429 NEDFLLIVLKELLPRRPELRLILMSATL-NAELFSSYFGGA----PMLHIPGF-TYPVRAYFLENILEMTRYRLNTYNQI 502 (1009)
Q Consensus 429 ~~d~ll~llk~ll~~~~~lkvIlmSATl-~~~~~~~yf~~~----pvi~i~g~-~~pv~~~yl~~i~~~~~~~~~~~~~i 502 (1009)
..-+.+..|+.+.. ++|.|++|||+ +++.+++|+.+. .++.+.+. ...+++..... ..
T Consensus 169 ~Lsl~LeRL~~l~~---~~qRIGLSATV~~~~~varfL~g~~~~~~Iv~~~~~k~~~i~v~~p~~-------------~~ 232 (814)
T COG1201 169 QLALSLERLRELAG---DFQRIGLSATVGPPEEVAKFLVGFGDPCEIVDVSAAKKLEIKVISPVE-------------DL 232 (814)
T ss_pred hhhhhHHHHHhhCc---ccEEEeehhccCCHHHHHHHhcCCCCceEEEEcccCCcceEEEEecCC-------------cc
Confidence 77777666666654 88999999999 899999999864 23333322 22233322111 00
Q ss_pred ccchhhhHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhcchhhhhhhccccCCCCCcchhhHHHHHHHHHhhcCCCcEEE
Q 001817 503 DDYGQEKSWKMQKQALALRKRKSSIASAVEDALEAADFREYSVQTQQSLSCWNPDSIGFNLIEHVLCHIVKKERPGAVLV 582 (1009)
Q Consensus 503 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLV 582 (1009)
... +.. .......+..+.++. ..+||
T Consensus 233 ~~~--~~~--------------------------------------------------~~~~~~~i~~~v~~~--~ttLI 258 (814)
T COG1201 233 IYD--EEL--------------------------------------------------WAALYERIAELVKKH--RTTLI 258 (814)
T ss_pred ccc--cch--------------------------------------------------hHHHHHHHHHHHhhc--CcEEE
Confidence 000 000 001112244444433 48999
Q ss_pred EcCCHhHHHHHHHHHHcCCCCCCCCCeEEEEecCCCCHHHHHhhcCCCCCCceEEEEecCccccccCCCCeeEEEeCCCC
Q 001817 583 FMTGWDDINSLKDQLQAHPLLGDPSRVLLLACHGSMASSEQRLIFDKPEDGVRKIVLATNMAETSITINDVVFVIDCGKA 662 (1009)
Q Consensus 583 Fl~~~~~i~~l~~~L~~~~~~~~~~~~~v~~lHs~l~~~er~~v~~~f~~G~~kVLVATniae~GIdIp~V~~VId~g~~ 662 (1009)
|+||+..++.++..|.... ...+..|||+++.+.|..++++|++|..+++|||+.+|-||||.+|+.||+.+-|
T Consensus 259 F~NTR~~aE~l~~~L~~~~------~~~i~~HHgSlSre~R~~vE~~lk~G~lravV~TSSLELGIDiG~vdlVIq~~SP 332 (814)
T COG1201 259 FTNTRSGAERLAFRLKKLG------PDIIEVHHGSLSRELRLEVEERLKEGELKAVVATSSLELGIDIGDIDLVIQLGSP 332 (814)
T ss_pred EEeChHHHHHHHHHHHHhc------CCceeeecccccHHHHHHHHHHHhcCCceEEEEccchhhccccCCceEEEEeCCc
Confidence 9999999999999998862 2569999999999999999999999999999999999999999999999999888
Q ss_pred ccccccCCCCCCcccccccCHHhHHhhhcccCCCC----CCcEEEecchhhhhh-------hc-cCCCccccccCchhhh
Q 001817 663 KETSYDALNNTPCLLPSWISKAAARQRRGRAGRVQ----PGECYHLYPRYVYDA-------FA-DYQLPELLRTPLQSLC 730 (1009)
Q Consensus 663 k~~~yd~~~~~~~l~~~~iS~as~~QR~GRAGR~~----~G~c~~Lys~~~~~~-------l~-~~~~PEi~r~~L~~~~ 730 (1009)
+ |.+.+.||+||+|+.- .|..|...-.+..+. +. ....+++-..+|+-++
T Consensus 333 ~------------------sV~r~lQRiGRsgHr~~~~Skg~ii~~~r~dllE~~vi~~~a~~g~le~~~i~~~~LDVLa 394 (814)
T COG1201 333 K------------------SVNRFLQRIGRAGHRLGEVSKGIIIAEDRDDLLECLVLADLALEGKLERIKIPKNPLDVLA 394 (814)
T ss_pred H------------------HHHHHhHhccccccccCCcccEEEEecCHHHHHHHHHHHHHHHhCCcccCCCCCcchhHHH
Confidence 8 8888999999999872 243333321111111 11 2234666667776554
Q ss_pred hHhhhc------CcCCHHHHHHhhc--CCCChhhHHHHHHHHHH
Q 001817 731 LQIKSL------QLGSISEFLSRAL--QPPEPLSVKNAIEYLQI 766 (1009)
Q Consensus 731 L~lk~l------~~~~~~~fl~~~l--~pP~~~~v~~al~~L~~ 766 (1009)
=++-++ .++.+.+++.++- ---+.+.....+++|..
T Consensus 395 q~ivg~~~~~~~~~~~~y~~vrraypy~~L~~e~f~~v~~~l~~ 438 (814)
T COG1201 395 QQIVGMALEKVWEVEEAYRVVRRAYPYADLSREDFRLVLRYLAG 438 (814)
T ss_pred HHHHHHHhhCcCCHHHHHHHHHhccccccCCHHHHHHHHHHHhh
Confidence 444332 2333444443321 11234567777888877
No 47
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=99.98 E-value=3e-32 Score=317.96 Aligned_cols=636 Identities=15% Similarity=0.140 Sum_probs=365.5
Q ss_pred cchhhhhhhccCCCcccccccccccccCCccccccccccccCCChhhhhhhcccccccccccccCccccccccccccccC
Q 001817 48 VAFRLLHHYHYHLPFHLSRRRHAVVTCSGAVTRTRRLDWKAVSYPLLEQQTSNYGRYAYQDESSDDSDREFGSTQQQMCG 127 (1009)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (1009)
-+|+|.+||||..-| +|+|++-+|.......+|.+.+..+..++ ++.+|++|+++-.++..+++..
T Consensus 247 ~~~~e~~~qdyad~L------------~d~y~qie~~~~~~~qdp~v~~~~k~~~~--~~~~~knSlks~~sk~~v~~~~ 312 (1330)
T KOG0949|consen 247 EGLVEHELQDYADVL------------GDKYRQIESRNVGMEQDPLVSGKEKSPTS--AAVHMKNSLKSAQSKFDVKLLY 312 (1330)
T ss_pred chhhHHHHHHHHHHh------------cchhhhHHHhhhhhhcCccccchhhhhhH--HHHHHhcChhccccccchhhhc
Confidence 368999999999999 99999999999999999999999999999 9999999999999999998877
Q ss_pred CCccchhHHHHHHHhh-----hcC--CCcccchhccccCcccHHH---HHHHHHHhcc---------------cccccce
Q 001817 128 STLDNIDEWRWKLTML-----LRN--KDEQEVVSRAKKDRRDFEQ---LSALATRMGL---------------HSRQYAK 182 (1009)
Q Consensus 128 ~~~~~~~~~~~~~~~~-----~~~--~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~---------------~~~~~~~ 182 (1009)
.|+++-..--.|++|- -++ ++|.-.+...|+...|+.. |+.+.|+-+. .+++.++
T Consensus 313 ~Pke~k~gk~gki~Qkqa~ia~~e~~Kke~kl~~e~Nk~knd~g~~ksl~~~~kr~~q~Gi~~ldg~~~~~dip~~Kig~ 392 (1330)
T KOG0949|consen 313 APKEAKGGKAGKISQKQAIIAENERRKKEEKLAKESNKLKNDFGKYKSLDNMSKRNGQRGIRKLDGYVYSFDIPFPKIGK 392 (1330)
T ss_pred CcccccCCCcchhhhhhhhhhhhhhhhhHHHHHHHHHHhhhhhhhhhhHHHHHhHHHHhhhhhhccceeecccchhHHHH
Confidence 7764332212223320 000 0000011111111122222 4445554433 2333333
Q ss_pred EEEEecCCCCCCccccccCCC-ccccccchhhHHHHHHHHHHHHHHhhccccccccccCCCCCCCccchhhhHHhhhhhH
Q 001817 183 VVVFSKAPLPNYRSDLDEKRP-QREVILPFGLLREVDAHLKAYLSQKYINASMSSLSNVGSTTNDEGLYEQQEQLVQNSV 261 (1009)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (1009)
.+-..-.++..|.+++...-+ .....++...+.|+++.++++.+....+-.+....+....++.+.....+.. .-+..
T Consensus 393 l~~~~v~e~R~~f~~~~~~v~~~~~l~~aId~p~~ik~~v~a~ldhll~~~kq~i~d~lk~~~l~sl~~s~~~~-l~d~e 471 (1330)
T KOG0949|consen 393 LILSNVPELRGEFKLSIGLVKREMLLAIAIDDPGRIKAKVLAVLDHLLLSLKQRIMDCLKLLGLESLAFSVPLK-LLDLE 471 (1330)
T ss_pred HHHhcchhhccccccccchHHHHHHHHHhhcCchhhHHHHhhhHHHHHHHHHHHHHHHHHHhhhhhhhhcCCCC-Ccchh
Confidence 333333444444444333311 2235566777888888888887776655444444444344332222111100 00000
Q ss_pred HHHHHHHHhhHHHHHHHHHHhcChhhHHHHHh-----hc-CCCCHHHHHHHHHHHHcCCeEEEEecCCCchhhhHHHHHH
Q 001817 262 VRERILRQRSLQMHEKQQAWQESPEGQKMLEF-----RR-SLPSYKERDALLKAISENQVVVVSGETGCGKTTQLPQYIL 335 (1009)
Q Consensus 262 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~-----r~-~LPi~~~q~~il~~l~~~~~vII~apTGSGKTt~~~~~il 335 (1009)
. + ....+........+++..+++...... |- ++-...+|.+.+..+..+..++|+|||.+||| .++.+++
T Consensus 472 ~-~--q~~~s~g~~~~~fQLqy~Ge~l~rsv~~~kD~RV~dF~Pd~WQ~elLDsvDr~eSavIVAPTSaGKT-fisfY~i 547 (1330)
T KOG0949|consen 472 L-D--QKDLSMGIAGLVFQLQYHGEYLLRSVSSKKDPRVHDFCPDEWQRELLDSVDRNESAVIVAPTSAGKT-FISFYAI 547 (1330)
T ss_pred h-h--cccCCCCccceehhhhhccchhhhccccCCCcchhccCCcHHHHHHhhhhhcccceEEEeeccCCce-eccHHHH
Confidence 0 0 123444444455666666665422211 11 14445566888999999999999999999999 5566777
Q ss_pred HHHHHHhcCCceEEEechhHHHHHHHHHHHHHHHhCCc-ccc---eeeeeeeeccccCCCcEEEEEccHHHHHHHhcCC-
Q 001817 336 ESETEAARGAACSIICTQPRRISAMAVSERVAAERGEK-LGE---SVGYKVRLEGMKGRDTRLMFCTTGILLRRLLVDR- 410 (1009)
Q Consensus 336 e~~~~~~~~~~~~IvvtqPrR~La~qva~rva~e~~~~-~g~---~vGy~vr~e~~~~~~t~Iiv~T~g~Ll~~L~~~~- 410 (1009)
|..++. .....+|++.|+++|+.|++..|...+... +.. ..|--.+..+...-+|+|+|+.|+++-..|...|
T Consensus 548 EKVLRe--sD~~VVIyvaPtKaLVnQvsa~VyaRF~~~t~~rg~sl~g~ltqEYsinp~nCQVLITvPecleslLlspp~ 625 (1330)
T KOG0949|consen 548 EKVLRE--SDSDVVIYVAPTKALVNQVSANVYARFDTKTFLRGVSLLGDLTQEYSINPWNCQVLITVPECLESLLLSPPH 625 (1330)
T ss_pred HHHHhh--cCCCEEEEecchHHHhhhhhHHHHHhhccCccccchhhHhhhhHHhcCCchhceEEEEchHHHHHHhcCchh
Confidence 877763 345688889999999999999998877332 211 1232233333444689999999999988887753
Q ss_pred ---CCCCccEEEEeCCCcCCCcchHHHHHHHHHcccCCCCcEEEeccCC-CHHHHHhhhC--------CCCeeccCCc--
Q 001817 411 ---SLRGVTHVIVDEIHERGMNEDFLLIVLKELLPRRPELRLILMSATL-NAELFSSYFG--------GAPMLHIPGF-- 476 (1009)
Q Consensus 411 ---~l~~is~IIIDEaHeR~~~~d~ll~llk~ll~~~~~lkvIlmSATl-~~~~~~~yf~--------~~pvi~i~g~-- 476 (1009)
+..++++||+||+|.-|-..|-++...--++. .+.+|++|||+ |++.|..|++ ++..+.+..+
T Consensus 626 ~q~~cerIRyiIfDEVH~iG~~ed~l~~Eqll~li---~CP~L~LSATigN~~l~qkWlnq~~R~~sr~~eli~~~eryS 702 (1330)
T KOG0949|consen 626 HQKFCERIRYIIFDEVHLIGNEEDGLLWEQLLLLI---PCPFLVLSATIGNPNLFQKWLNQRGRAMSRNAELIDYGERYS 702 (1330)
T ss_pred hhhhhhcceEEEechhhhccccccchHHHHHHHhc---CCCeeEEecccCCHHHHHHHHHHHHhhcCCCeeeeehhhhhh
Confidence 88999999999999766555433222111222 34599999999 9999999997 1222222211
Q ss_pred ---------ccceeeEehhhHHHHhhhccCc----------ccccccchh--hhHHHHHHHHHH-------------HHh
Q 001817 477 ---------TYPVRAYFLENILEMTRYRLNT----------YNQIDDYGQ--EKSWKMQKQALA-------------LRK 522 (1009)
Q Consensus 477 ---------~~pv~~~yl~~i~~~~~~~~~~----------~~~i~~~~~--~~~~~~~~~~~~-------------~~~ 522 (1009)
..+-+.+|+-............ .+.+..+.+ ...|........ ..+
T Consensus 703 el~l~v~n~~~e~n~~yl~~~falgerai~~~~~~~~~s~dd~~~lafe~~~~l~~~k~~kl~~k~~p~~~fe~~~~~~k 782 (1330)
T KOG0949|consen 703 ELGLVVYNRMNEGNAYYLLKLFALGERAIIVSLRELSESEDDNVVLAFEPLSCLTLRKLNKLLIKITPENFFESNIVTKK 782 (1330)
T ss_pred hhcceeeccCCCCcchHHHHHHhhchhhccchhhccccCCCCceEeeccchhHHHHHHHHHHHhhcCHHHhhhhhhheec
Confidence 1222222221111110000000 000000000 000100000000 000
Q ss_pred hhhhHH---HHHHHHHHHhhh------cchhhh---hhhcccc---CCCCCcchhhHHHHHHHHHhhcCCCcEEEEcCCH
Q 001817 523 RKSSIA---SAVEDALEAADF------REYSVQ---TQQSLSC---WNPDSIGFNLIEHVLCHIVKKERPGAVLVFMTGW 587 (1009)
Q Consensus 523 ~~~~~~---~~v~~~l~~~~~------~~~~~~---~~~~l~~---~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~~ 587 (1009)
....+. ..+.+.+..... ..+... ....++. ++.+.+..+ +..++..+.+ ...-+.++|-..+
T Consensus 783 ~~~e~~r~~~~l~~~f~e~s~~q~kik~~~ki~~k~Vnkqle~~~~ys~e~i~~n-il~ll~dLkE-K~~lpaicfn~dr 860 (1330)
T KOG0949|consen 783 EVGEYGRHLLELFQGFIEDSLTQKQIKYVYKLQTKEVNKQLESVVDYSSEYILEN-ILDLLMDLKE-KNMLPAICFNTDR 860 (1330)
T ss_pred hHHHHHHHHHHHHHHhhhcChHHHHHHHHHHhhhhhhhhHhhhcccCcHHHHHHH-HHHHHHHHHh-ccccchhcccchH
Confidence 000000 000000000000 000000 0011111 111112222 4444444433 3356888998888
Q ss_pred hHHHHHHHHHHcC--------C-------------------------------------C--------------------
Q 001817 588 DDINSLKDQLQAH--------P-------------------------------------L-------------------- 602 (1009)
Q Consensus 588 ~~i~~l~~~L~~~--------~-------------------------------------~-------------------- 602 (1009)
..++.++..+.+. . .
T Consensus 861 ~fcekla~kv~~~Le~~e~Ee~k~k~m~k~kk~~~~a~~r~Kt~e~~~k~~~~~ek~~~~k~d~~~~~~~f~dp~~~~~~ 940 (1330)
T KOG0949|consen 861 DFCEKLALKVHRQLESMEMEEKKDKLMEKMKKEAKRARDREKTKESWIKESIAAEKSFQMKNDKKNIKYTFLDPLTKLTD 940 (1330)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccceEEecCcccccch
Confidence 7777665443210 0 0
Q ss_pred ---------CCCCC-------CeEEEEecCCCCHHHHHhhcCCCCCCceEEEEecCccccccCCCCeeEEEeCCCCcccc
Q 001817 603 ---------LGDPS-------RVLLLACHGSMASSEQRLIFDKPEDGVRKIVLATNMAETSITINDVVFVIDCGKAKETS 666 (1009)
Q Consensus 603 ---------~~~~~-------~~~v~~lHs~l~~~er~~v~~~f~~G~~kVLVATniae~GIdIp~V~~VId~g~~k~~~ 666 (1009)
.|+.+ --.++.||++|+..+|..|+-.|+.|...||+||.+++-|||+|--++|.-.
T Consensus 941 ~~f~~~~~~~g~~~~~~id~lyRGiG~HHaglNr~yR~~VEvLFR~g~L~VlfaT~TLsLGiNMPCrTVvF~g------- 1013 (1330)
T KOG0949|consen 941 YEFEEETKFIGNTDFEFIDMLYRGIGVHHAGLNRKYRSLVEVLFRQGHLQVLFATETLSLGINMPCRTVVFAG------- 1013 (1330)
T ss_pred hhhhhhccccCCCcHHHHHHHHhcccccccccchHHHHHHHHHhhcCceEEEEEeeehhcccCCCceeEEEec-------
Confidence 01000 1158899999999999999999999999999999999999999976666531
Q ss_pred ccCCCCCCcccccccCHHhHHhhhcccCCCC---CCcEEEe-cchhhhhhhccCCCccccccCc
Q 001817 667 YDALNNTPCLLPSWISKAAARQRRGRAGRVQ---PGECYHL-YPRYVYDAFADYQLPELLRTPL 726 (1009)
Q Consensus 667 yd~~~~~~~l~~~~iS~as~~QR~GRAGR~~---~G~c~~L-ys~~~~~~l~~~~~PEi~r~~L 726 (1009)
++|. .+..+|.|++|||||.| -|.+..+ ++......+.-...|.|+..+.
T Consensus 1014 -------DsLQ---L~plny~QmaGRAGRRGFD~lGnV~FmgiP~~kv~rLlts~L~diqG~~p 1067 (1330)
T KOG0949|consen 1014 -------DSLQ---LDPLNYKQMAGRAGRRGFDTLGNVVFMGIPRQKVQRLLTSLLPDIQGAYP 1067 (1330)
T ss_pred -------cccc---cCchhHHhhhccccccccccccceEEEeCcHHHHHHHHHHhhhcccCCCc
Confidence 2222 46779999999999996 4777666 7888888888888899887755
No 48
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.98 E-value=2.2e-32 Score=286.29 Aligned_cols=322 Identities=20% Similarity=0.229 Sum_probs=231.3
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHHHcCCeEEEEecCCCchhhhHHHHHHHHHHHHhcCCceEEEechhHHHHHHHHHHHHH
Q 001817 288 QKMLEFRRSLPSYKERDALLKAISENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVA 367 (1009)
Q Consensus 288 ~~l~~~r~~LPi~~~q~~il~~l~~~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~IvvtqPrR~La~qva~rva 367 (1009)
..+++.-...|...|.+.|.-++ .+++++.-|..|+|||-++..++++.+.... .....+|++|||+||.|+.+. .
T Consensus 98 mgIfe~G~ekPSPiQeesIPiaL-tGrdiLaRaKNGTGKT~a~~IP~Lekid~~~--~~IQ~~ilVPtrelALQtSqv-c 173 (459)
T KOG0326|consen 98 MGIFEKGFEKPSPIQEESIPIAL-TGRDILARAKNGTGKTAAYCIPVLEKIDPKK--NVIQAIILVPTRELALQTSQV-C 173 (459)
T ss_pred HHHHHhccCCCCCccccccceee-cchhhhhhccCCCCCccceechhhhhcCccc--cceeEEEEeecchhhHHHHHH-H
Confidence 34666667788888866666655 8999999999999999999999999874322 233445555999999997653 3
Q ss_pred HHhCCcccce----ee-eeeeeccc-cCCCcEEEEEccHHHHHHHhcCC-CCCCccEEEEeCCCcCCCcchHHHHHHHHH
Q 001817 368 AERGEKLGES----VG-YKVRLEGM-KGRDTRLMFCTTGILLRRLLVDR-SLRGVTHVIVDEIHERGMNEDFLLIVLKEL 440 (1009)
Q Consensus 368 ~e~~~~~g~~----vG-y~vr~e~~-~~~~t~Iiv~T~g~Ll~~L~~~~-~l~~is~IIIDEaHeR~~~~d~ll~llk~l 440 (1009)
.+++.-+|.. +| -..+.+-. .....+++|+|||+++++....- .+++...+|+|||+.. +..||-..+-+.+
T Consensus 174 ~~lskh~~i~vmvttGGT~lrDDI~Rl~~~VH~~vgTPGRIlDL~~KgVa~ls~c~~lV~DEADKl-Ls~~F~~~~e~li 252 (459)
T KOG0326|consen 174 KELSKHLGIKVMVTTGGTSLRDDIMRLNQTVHLVVGTPGRILDLAKKGVADLSDCVILVMDEADKL-LSVDFQPIVEKLI 252 (459)
T ss_pred HHHhcccCeEEEEecCCcccccceeeecCceEEEEcCChhHHHHHhcccccchhceEEEechhhhh-hchhhhhHHHHHH
Confidence 5554444433 33 11122211 23557999999999999887654 7999999999999963 6667766555544
Q ss_pred cccCCCCcEEEeccCCCH--HHHH-hhhCCCCeeccCCcccceeeEehhhHHHHhhhccCcccccccchhhhHHHHHHHH
Q 001817 441 LPRRPELRLILMSATLNA--ELFS-SYFGGAPMLHIPGFTYPVRAYFLENILEMTRYRLNTYNQIDDYGQEKSWKMQKQA 517 (1009)
Q Consensus 441 l~~~~~lkvIlmSATl~~--~~~~-~yf~~~pvi~i~g~~~pv~~~yl~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 517 (1009)
.-..++.|+++.|||.+. ..|. +|+.. |.++..++++. -.
T Consensus 253 ~~lP~~rQillySATFP~tVk~Fm~~~l~k-----------Py~INLM~eLt---l~----------------------- 295 (459)
T KOG0326|consen 253 SFLPKERQILLYSATFPLTVKGFMDRHLKK-----------PYEINLMEELT---LK----------------------- 295 (459)
T ss_pred HhCCccceeeEEecccchhHHHHHHHhccC-----------cceeehhhhhh---hc-----------------------
Confidence 445667899999999853 2222 23321 22232222210 00
Q ss_pred HHHHhhhhhHHHHHHHHHHHhhhcchhhhhhhccccCCCCCcchhhHHHHHHHHHhhcCCCcEEEEcCCHhHHHHHHHHH
Q 001817 518 LALRKRKSSIASAVEDALEAADFREYSVQTQQSLSCWNPDSIGFNLIEHVLCHIVKKERPGAVLVFMTGWDDINSLKDQL 597 (1009)
Q Consensus 518 ~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~~~~i~~l~~~L 597 (1009)
-+.+.+.. +....+...+..++.+..-...+|||++...++-++..+
T Consensus 296 ------------GvtQyYaf---------------------V~e~qKvhCLntLfskLqINQsIIFCNS~~rVELLAkKI 342 (459)
T KOG0326|consen 296 ------------GVTQYYAF---------------------VEERQKVHCLNTLFSKLQINQSIIFCNSTNRVELLAKKI 342 (459)
T ss_pred ------------chhhheee---------------------echhhhhhhHHHHHHHhcccceEEEeccchHhHHHHHHH
Confidence 00000000 000111222344444555678999999999999999999
Q ss_pred HcCCCCCCCCCeEEEEecCCCCHHHHHhhcCCCCCCceEEEEecCccccccCCCCeeEEEeCCCCccccccCCCCCCccc
Q 001817 598 QAHPLLGDPSRVLLLACHGSMASSEQRLIFDKPEDGVRKIVLATNMAETSITINDVVFVIDCGKAKETSYDALNNTPCLL 677 (1009)
Q Consensus 598 ~~~~~~~~~~~~~v~~lHs~l~~~er~~v~~~f~~G~~kVLVATniae~GIdIp~V~~VId~g~~k~~~yd~~~~~~~l~ 677 (1009)
.+. ++.+.++|+.|-++.|.+||..|++|.++.||||+.+.+||||++|++|||+++||
T Consensus 343 Tel-------GyscyyiHakM~Q~hRNrVFHdFr~G~crnLVctDL~TRGIDiqavNvVINFDfpk-------------- 401 (459)
T KOG0326|consen 343 TEL-------GYSCYYIHAKMAQEHRNRVFHDFRNGKCRNLVCTDLFTRGIDIQAVNVVINFDFPK-------------- 401 (459)
T ss_pred Hhc-------cchhhHHHHHHHHhhhhhhhhhhhccccceeeehhhhhcccccceeeEEEecCCCC--------------
Confidence 887 78899999999999999999999999999999999999999999999999999999
Q ss_pred ccccCHHhHHhhhcccCCCC-CCcEEEecchhh
Q 001817 678 PSWISKAAARQRRGRAGRVQ-PGECYHLYPRYV 709 (1009)
Q Consensus 678 ~~~iS~as~~QR~GRAGR~~-~G~c~~Lys~~~ 709 (1009)
+..+|.||+||+||.| .|.++.|++-++
T Consensus 402 ----~aEtYLHRIGRsGRFGhlGlAInLityed 430 (459)
T KOG0326|consen 402 ----NAETYLHRIGRSGRFGHLGLAINLITYED 430 (459)
T ss_pred ----CHHHHHHHccCCccCCCcceEEEEEehhh
Confidence 7889999999999996 599999987543
No 49
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=99.98 E-value=7.9e-32 Score=342.75 Aligned_cols=310 Identities=25% Similarity=0.319 Sum_probs=203.4
Q ss_pred EEecCCCchhhhHHHHHHHHHHHHh--------cCCceEEEechhHHHHHHHHHHHHHHHh----------CC-ccccee
Q 001817 318 VSGETGCGKTTQLPQYILESETEAA--------RGAACSIICTQPRRISAMAVSERVAAER----------GE-KLGESV 378 (1009)
Q Consensus 318 I~apTGSGKTt~~~~~ile~~~~~~--------~~~~~~IvvtqPrR~La~qva~rva~e~----------~~-~~g~~v 378 (1009)
|++|||||||+++.+++++.++... ...+++++|+.|+|+|+.|+.+++...+ |. ..+..|
T Consensus 1 V~APTGSGKTLAA~LpaL~~Ll~~~~~~~~~~~~~~~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V 80 (1490)
T PRK09751 1 VIAPTGSGKTLAAFLYALDRLFREGGEDTREAHKRKTSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRV 80 (1490)
T ss_pred CcCCCCcHHHHHHHHHHHHHHHhcccccccccccCCCCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEE
Confidence 5799999999999999999887542 1235789999999999999999875421 11 123334
Q ss_pred eeeeee----cc--ccCCCcEEEEEccHHHHHHHhcCC--CCCCccEEEEeCCCc-----CCCcchHHHHHHHHHcccCC
Q 001817 379 GYKVRL----EG--MKGRDTRLMFCTTGILLRRLLVDR--SLRGVTHVIVDEIHE-----RGMNEDFLLIVLKELLPRRP 445 (1009)
Q Consensus 379 Gy~vr~----e~--~~~~~t~Iiv~T~g~Ll~~L~~~~--~l~~is~IIIDEaHe-----R~~~~d~ll~llk~ll~~~~ 445 (1009)
+..... +. .....++|+|+||+.|..++.+.. .++++++|||||+|+ ||.+....+..++.++. .
T Consensus 81 ~vrtGDt~~~eR~rll~~ppdILVTTPEsL~~LLtsk~r~~L~~Vr~VIVDE~H~L~g~kRG~~Lel~LeRL~~l~~--~ 158 (1490)
T PRK09751 81 GIRTGDTPAQERSKLTRNPPDILITTPESLYLMLTSRARETLRGVETVIIDEVHAVAGSKRGAHLALSLERLDALLH--T 158 (1490)
T ss_pred EEEECCCCHHHHHHHhcCCCCEEEecHHHHHHHHhhhhhhhhccCCEEEEecHHHhcccccccHHHHHHHHHHHhCC--C
Confidence 422211 11 122467999999999987765432 789999999999995 34444445555555432 4
Q ss_pred CCcEEEeccCC-CHHHHHhhhCCC-Ceecc-CC--cccceeeEeh-hhHHHHhhhccCcccccccchhhhHHHHHHHHHH
Q 001817 446 ELRLILMSATL-NAELFSSYFGGA-PMLHI-PG--FTYPVRAYFL-ENILEMTRYRLNTYNQIDDYGQEKSWKMQKQALA 519 (1009)
Q Consensus 446 ~lkvIlmSATl-~~~~~~~yf~~~-pvi~i-~g--~~~pv~~~yl-~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 519 (1009)
+.|+|++|||+ |.+.+++|+++. ++..+ +. +..++++... ++..+ +....... .....
T Consensus 159 ~~QrIgLSATI~n~eevA~~L~g~~pv~Iv~~~~~r~~~l~v~vp~~d~~~-----------~~~~~~~~----~~~~~- 222 (1490)
T PRK09751 159 SAQRIGLSATVRSASDVAAFLGGDRPVTVVNPPAMRHPQIRIVVPVANMDD-----------VSSVASGT----GEDSH- 222 (1490)
T ss_pred CCeEEEEEeeCCCHHHHHHHhcCCCCEEEECCCCCcccceEEEEecCchhh-----------cccccccc----ccccc-
Confidence 68999999999 888999999864 33211 11 1223322110 00000 00000000 00000
Q ss_pred HHhhhhhHHHHHHHHHHHhhhcchhhhhhhccccCCCCCcchhhHHHHHHHHHhhcCCCcEEEEcCCHhHHHHHHHHHHc
Q 001817 520 LRKRKSSIASAVEDALEAADFREYSVQTQQSLSCWNPDSIGFNLIEHVLCHIVKKERPGAVLVFMTGWDDINSLKDQLQA 599 (1009)
Q Consensus 520 ~~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~~~~i~~l~~~L~~ 599 (1009)
......+.. .....++..+ ....++|||++++..++.++..|.+
T Consensus 223 -~~r~~~i~~--------------------------------~v~~~il~~i---~~~~stLVFvNSR~~AE~La~~L~~ 266 (1490)
T PRK09751 223 -AGREGSIWP--------------------------------YIETGILDEV---LRHRSTIVFTNSRGLAEKLTARLNE 266 (1490)
T ss_pred -hhhhhhhhH--------------------------------HHHHHHHHHH---hcCCCEEEECCCHHHHHHHHHHHHH
Confidence 000000000 0001112222 1357899999999999999999875
Q ss_pred CCCC-------------------C-------CCCCeEEEEecCCCCHHHHHhhcCCCCCCceEEEEecCccccccCCCCe
Q 001817 600 HPLL-------------------G-------DPSRVLLLACHGSMASSEQRLIFDKPEDGVRKIVLATNMAETSITINDV 653 (1009)
Q Consensus 600 ~~~~-------------------~-------~~~~~~v~~lHs~l~~~er~~v~~~f~~G~~kVLVATniae~GIdIp~V 653 (1009)
.... + ....+.+..|||+|+.++|..+++.|++|++++||||+++|.||||++|
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~HHGsLSkeeR~~IE~~fK~G~LrvLVATssLELGIDIg~V 346 (1490)
T PRK09751 267 LYAARLQRSPSIAVDAAHFESTSGATSNRVQSSDVFIARSHHGSVSKEQRAITEQALKSGELRCVVATSSLELGIDMGAV 346 (1490)
T ss_pred hhhhhccccccccchhhhhhhccccchhccccccceeeeeccccCCHHHHHHHHHHHHhCCceEEEeCcHHHccCCcccC
Confidence 3100 0 0012347789999999999999999999999999999999999999999
Q ss_pred eEEEeCCCCccccccCCCCCCcccccccCHHhHHhhhcccCCCCCC
Q 001817 654 VFVIDCGKAKETSYDALNNTPCLLPSWISKAAARQRRGRAGRVQPG 699 (1009)
Q Consensus 654 ~~VId~g~~k~~~yd~~~~~~~l~~~~iS~as~~QR~GRAGR~~~G 699 (1009)
++||+.|.|+ |.++|+||+|||||...|
T Consensus 347 DlVIq~gsP~------------------sVas~LQRiGRAGR~~gg 374 (1490)
T PRK09751 347 DLVIQVATPL------------------SVASGLQRIGRAGHQVGG 374 (1490)
T ss_pred CEEEEeCCCC------------------CHHHHHHHhCCCCCCCCC
Confidence 9999988876 889999999999998433
No 50
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=99.98 E-value=1e-31 Score=327.23 Aligned_cols=304 Identities=20% Similarity=0.216 Sum_probs=210.3
Q ss_pred HHHHHHHHHHHHcCCeEEEEecCCCchhhhHHHHHHHHHHHHhcCCceEEEechhHHHHHHHHHHHHHHHhCCcccceee
Q 001817 300 YKERDALLKAISENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERGEKLGESVG 379 (1009)
Q Consensus 300 ~~~q~~il~~l~~~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~IvvtqPrR~La~qva~rva~e~~~~~g~~vG 379 (1009)
...|.++++++.+++++++++|||+|||+++.++++. . .+.++|++|+++|+.|..+.+.. +|..+....|
T Consensus 15 r~~Q~~~i~~il~g~dvlv~~PTG~GKTl~y~lpal~------~--~g~~lVisPl~sL~~dq~~~l~~-~gi~~~~~~s 85 (591)
T TIGR01389 15 RPGQEEIISHVLDGRDVLVVMPTGGGKSLCYQVPALL------L--KGLTVVISPLISLMKDQVDQLRA-AGVAAAYLNS 85 (591)
T ss_pred CHHHHHHHHHHHcCCCEEEEcCCCccHhHHHHHHHHH------c--CCcEEEEcCCHHHHHHHHHHHHH-cCCcEEEEeC
Confidence 3457888888999999999999999999998887763 1 23466677999999999888855 3433221111
Q ss_pred eeeee-------ccccCCCcEEEEEccHHHHHHHhc-CCCCCCccEEEEeCCCcCCC-cchHH--HHHHHHHcccCCCCc
Q 001817 380 YKVRL-------EGMKGRDTRLMFCTTGILLRRLLV-DRSLRGVTHVIVDEIHERGM-NEDFL--LIVLKELLPRRPELR 448 (1009)
Q Consensus 380 y~vr~-------e~~~~~~t~Iiv~T~g~Ll~~L~~-~~~l~~is~IIIDEaHeR~~-~~d~l--l~llk~ll~~~~~lk 448 (1009)
.... ........+|+|+||+.|...... .....++++|||||||+.+. ..||. ...+..+....|+.+
T Consensus 86 -~~~~~~~~~~~~~l~~~~~~il~~tpe~l~~~~~~~~l~~~~l~~iViDEaH~i~~~g~~frp~y~~l~~l~~~~~~~~ 164 (591)
T TIGR01389 86 -TLSAKEQQDIEKALVNGELKLLYVAPERLEQDYFLNMLQRIPIALVAVDEAHCVSQWGHDFRPEYQRLGSLAERFPQVP 164 (591)
T ss_pred -CCCHHHHHHHHHHHhCCCCCEEEEChhHhcChHHHHHHhcCCCCEEEEeCCcccccccCccHHHHHHHHHHHHhCCCCC
Confidence 0100 111234578999999998643221 12456899999999997432 12332 222333444456667
Q ss_pred EEEeccCCCHH---HHHhhhCCC-CeeccCCcccceeeEehhhHHHHhhhccCcccccccchhhhHHHHHHHHHHHHhhh
Q 001817 449 LILMSATLNAE---LFSSYFGGA-PMLHIPGFTYPVRAYFLENILEMTRYRLNTYNQIDDYGQEKSWKMQKQALALRKRK 524 (1009)
Q Consensus 449 vIlmSATl~~~---~~~~yf~~~-pvi~i~g~~~pv~~~yl~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 524 (1009)
+|++|||.+.. .+.++++-. +...+.+...| ...|.. .
T Consensus 165 vi~lTAT~~~~~~~~i~~~l~~~~~~~~~~~~~r~-nl~~~v----------~--------------------------- 206 (591)
T TIGR01389 165 RIALTATADAETRQDIRELLRLADANEFITSFDRP-NLRFSV----------V--------------------------- 206 (591)
T ss_pred EEEEEeCCCHHHHHHHHHHcCCCCCCeEecCCCCC-CcEEEE----------E---------------------------
Confidence 99999999654 344555421 11111111000 000000 0
Q ss_pred hhHHHHHHHHHHHhhhcchhhhhhhccccCCCCCcchhhHHHHHHHHHhhcCCCcEEEEcCCHhHHHHHHHHHHcCCCCC
Q 001817 525 SSIASAVEDALEAADFREYSVQTQQSLSCWNPDSIGFNLIEHVLCHIVKKERPGAVLVFMTGWDDINSLKDQLQAHPLLG 604 (1009)
Q Consensus 525 ~~~~~~v~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~~~~i~~l~~~L~~~~~~~ 604 (1009)
.. .+ ....+...+.....+++||||+++++++.+++.|...
T Consensus 207 -------------------------------~~---~~-~~~~l~~~l~~~~~~~~IIf~~sr~~~e~la~~L~~~---- 247 (591)
T TIGR01389 207 -------------------------------KK---NN-KQKFLLDYLKKHRGQSGIIYASSRKKVEELAERLESQ---- 247 (591)
T ss_pred -------------------------------eC---CC-HHHHHHHHHHhcCCCCEEEEECcHHHHHHHHHHHHhC----
Confidence 00 00 0011222223334678999999999999999999875
Q ss_pred CCCCeEEEEecCCCCHHHHHhhcCCCCCCceEEEEecCccccccCCCCeeEEEeCCCCccccccCCCCCCcccccccCHH
Q 001817 605 DPSRVLLLACHGSMASSEQRLIFDKPEDGVRKIVLATNMAETSITINDVVFVIDCGKAKETSYDALNNTPCLLPSWISKA 684 (1009)
Q Consensus 605 ~~~~~~v~~lHs~l~~~er~~v~~~f~~G~~kVLVATniae~GIdIp~V~~VId~g~~k~~~yd~~~~~~~l~~~~iS~a 684 (1009)
++.+..+||+|+.++|..+++.|..|.++|||||+++++|||+|+|++||+++.|+ |..
T Consensus 248 ---g~~~~~~H~~l~~~~R~~i~~~F~~g~~~vlVaT~a~~~GID~p~v~~VI~~~~p~------------------s~~ 306 (591)
T TIGR01389 248 ---GISALAYHAGLSNKVRAENQEDFLYDDVKVMVATNAFGMGIDKPNVRFVIHYDMPG------------------NLE 306 (591)
T ss_pred ---CCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEechhhccCcCCCCCEEEEcCCCC------------------CHH
Confidence 66789999999999999999999999999999999999999999999999988887 788
Q ss_pred hHHhhhcccCCCC-CCcEEEecchhhhh
Q 001817 685 AARQRRGRAGRVQ-PGECYHLYPRYVYD 711 (1009)
Q Consensus 685 s~~QR~GRAGR~~-~G~c~~Lys~~~~~ 711 (1009)
+|.||+|||||.| +|.|+.+|+..+..
T Consensus 307 ~y~Q~~GRaGR~G~~~~~il~~~~~d~~ 334 (591)
T TIGR01389 307 SYYQEAGRAGRDGLPAEAILLYSPADIA 334 (591)
T ss_pred HHhhhhccccCCCCCceEEEecCHHHHH
Confidence 9999999999996 69999999987654
No 51
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=99.98 E-value=1.6e-32 Score=304.90 Aligned_cols=350 Identities=21% Similarity=0.247 Sum_probs=233.5
Q ss_pred HHHHhcChhhHHHH----HhhcCCCCHHHHHHHHHHHHcCCeEEEEecCCCchhhhHHHHHHHHHHH---------Hh--
Q 001817 278 QQAWQESPEGQKML----EFRRSLPSYKERDALLKAISENQVVVVSGETGCGKTTQLPQYILESETE---------AA-- 342 (1009)
Q Consensus 278 ~~~~~~~~~~~~l~----~~r~~LPi~~~q~~il~~l~~~~~vII~apTGSGKTt~~~~~ile~~~~---------~~-- 342 (1009)
...|.+......++ .....-|+.+|...+..++....+++-.|+||||||+++.++|++.+.. +.
T Consensus 180 vsAW~~l~lp~~iL~aL~~~gFs~Pt~IQsl~lp~ai~gk~DIlGaAeTGSGKTLAFGIPiv~~l~~~s~~s~e~~~~~~ 259 (731)
T KOG0347|consen 180 VSAWKNLFLPMEILRALSNLGFSRPTEIQSLVLPAAIRGKVDILGAAETGSGKTLAFGIPIVERLLESSDDSQELSNTSA 259 (731)
T ss_pred hHHHhcCCCCHHHHHHHHhcCCCCCccchhhcccHhhccchhcccccccCCCceeeecchhhhhhhhccchHhhhhhHHh
Confidence 45676654433343 3445569999988888888777999999999999999999999994432 21
Q ss_pred cCCceEEEechhHHHHHHHHHHHHHHHh---CCcccceee-eee-eeccccCCCcEEEEEccHHHHHHHhcCC----CCC
Q 001817 343 RGAACSIICTQPRRISAMAVSERVAAER---GEKLGESVG-YKV-RLEGMKGRDTRLMFCTTGILLRRLLVDR----SLR 413 (1009)
Q Consensus 343 ~~~~~~IvvtqPrR~La~qva~rva~e~---~~~~g~~vG-y~v-r~e~~~~~~t~Iiv~T~g~Ll~~L~~~~----~l~ 413 (1009)
++.....+|+.|||+||.|+...+.... +..+...+| ..+ ..+...+..++|+|+|||+|+.++..+. .++
T Consensus 260 k~~k~~~LV~tPTRELa~QV~~Hl~ai~~~t~i~v~si~GGLavqKQqRlL~~~p~IVVATPGRlweli~e~n~~l~~~k 339 (731)
T KOG0347|consen 260 KYVKPIALVVTPTRELAHQVKQHLKAIAEKTQIRVASITGGLAVQKQQRLLNQRPDIVVATPGRLWELIEEDNTHLGNFK 339 (731)
T ss_pred ccCcceeEEecChHHHHHHHHHHHHHhccccCeEEEEeechhHHHHHHHHHhcCCCEEEecchHHHHHHHhhhhhhhhhh
Confidence 2233347888899999999998875543 333333444 111 1223344578999999999999997765 578
Q ss_pred CccEEEEeCCCcCCCcch---HHHHHHHHHcc--cCCCCcEEEeccCCCHHHHHhhhCCCCeeccCCcccceeeEehhhH
Q 001817 414 GVTHVIVDEIHERGMNED---FLLIVLKELLP--RRPELRLILMSATLNAELFSSYFGGAPMLHIPGFTYPVRAYFLENI 488 (1009)
Q Consensus 414 ~is~IIIDEaHeR~~~~d---~ll~llk~ll~--~~~~lkvIlmSATl~~~~~~~yf~~~pvi~i~g~~~pv~~~yl~~i 488 (1009)
+++++|+||++ |.+.-. -+..+|+.+.. .++..|.+++|||+........- ...+..
T Consensus 340 ~vkcLVlDEaD-RmvekghF~Els~lL~~L~e~~~~~qrQTlVFSATlt~~~~~~~~-------~~~k~~---------- 401 (731)
T KOG0347|consen 340 KVKCLVLDEAD-RMVEKGHFEELSKLLKHLNEEQKNRQRQTLVFSATLTLVLQQPLS-------SSRKKK---------- 401 (731)
T ss_pred hceEEEEccHH-HHhhhccHHHHHHHHHHhhhhhcccccceEEEEEEeehhhcChhH-------Hhhhcc----------
Confidence 99999999999 434332 34445555542 44567999999998644221100 000000
Q ss_pred HHHhhhccCcccccccchhhhHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhcchhh------------hhhhccccCCC
Q 001817 489 LEMTRYRLNTYNQIDDYGQEKSWKMQKQALALRKRKSSIASAVEDALEAADFREYSV------------QTQQSLSCWNP 556 (1009)
Q Consensus 489 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~------------~~~~~l~~~~~ 556 (1009)
.+.......++..+....+.+... ...+.+....+
T Consensus 402 ---------------------------------~k~~~~~~kiq~Lmk~ig~~~kpkiiD~t~q~~ta~~l~Es~I~C~~ 448 (731)
T KOG0347|consen 402 ---------------------------------DKEDELNAKIQHLMKKIGFRGKPKIIDLTPQSATASTLTESLIECPP 448 (731)
T ss_pred ---------------------------------chhhhhhHHHHHHHHHhCccCCCeeEecCcchhHHHHHHHHhhcCCc
Confidence 000011111222222221111100 00000000011
Q ss_pred CCcchhhHHHHHHHHHhhcCCCcEEEEcCCHhHHHHHHHHHHcCCCCCCCCCeEEEEecCCCCHHHHHhhcCCCCCCceE
Q 001817 557 DSIGFNLIEHVLCHIVKKERPGAVLVFMTGWDDINSLKDQLQAHPLLGDPSRVLLLACHGSMASSEQRLIFDKPEDGVRK 636 (1009)
Q Consensus 557 ~~i~~~li~~ll~~i~~~~~~g~iLVFl~~~~~i~~l~~~L~~~~~~~~~~~~~v~~lHs~l~~~er~~v~~~f~~G~~k 636 (1009)
..-++ -+++++. .-+|++||||++.+.+.+++-.|... ++..+++|+.|.+.+|-+.++.|+...--
T Consensus 449 ~eKD~-----ylyYfl~-ryPGrTlVF~NsId~vKRLt~~L~~L-------~i~p~~LHA~M~QKqRLknLEkF~~~~~~ 515 (731)
T KOG0347|consen 449 LEKDL-----YLYYFLT-RYPGRTLVFCNSIDCVKRLTVLLNNL-------DIPPLPLHASMIQKQRLKNLEKFKQSPSG 515 (731)
T ss_pred cccce-----eEEEEEe-ecCCceEEEechHHHHHHHHHHHhhc-------CCCCchhhHHHHHHHHHHhHHHHhcCCCe
Confidence 11111 1122222 24799999999999999999999876 66688999999999999999999999999
Q ss_pred EEEecCccccccCCCCeeEEEeCCCCccccccCCCCCCcccccccCHHhHHhhhcccCCCC-CCcEEEecchhh
Q 001817 637 IVLATNMAETSITINDVVFVIDCGKAKETSYDALNNTPCLLPSWISKAAARQRRGRAGRVQ-PGECYHLYPRYV 709 (1009)
Q Consensus 637 VLVATniae~GIdIp~V~~VId~g~~k~~~yd~~~~~~~l~~~~iS~as~~QR~GRAGR~~-~G~c~~Lys~~~ 709 (1009)
|||||++|++|+|||+|.+||++-.|+ +...|+||.||+.|.. .|....|+.+..
T Consensus 516 VLiaTDVAARGLDIp~V~HVIHYqVPr------------------tseiYVHRSGRTARA~~~Gvsvml~~P~e 571 (731)
T KOG0347|consen 516 VLIATDVAARGLDIPGVQHVIHYQVPR------------------TSEIYVHRSGRTARANSEGVSVMLCGPQE 571 (731)
T ss_pred EEEeehhhhccCCCCCcceEEEeecCC------------------ccceeEecccccccccCCCeEEEEeChHH
Confidence 999999999999999999999988887 4556779999999995 599999887643
No 52
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=99.98 E-value=1.9e-30 Score=289.17 Aligned_cols=382 Identities=18% Similarity=0.205 Sum_probs=241.5
Q ss_pred CHHHHHHHHHHHHcCCeEEEEecCCCchhhhHHHHHHHHHHHHhcCCceEEEechhHHHHHHHHHHHHHHHhCCccccee
Q 001817 299 SYKERDALLKAISENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERGEKLGESV 378 (1009)
Q Consensus 299 i~~~q~~il~~l~~~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~IvvtqPrR~La~qva~rva~e~~~~~g~~v 378 (1009)
...||..|...... ++++|+.|||-|||+.+.+.+...+.. .++++++++||+-|+.|.++.+.+.+|.+....+
T Consensus 16 ~R~YQ~~i~a~al~-~NtLvvlPTGLGKT~IA~~V~~~~l~~----~~~kvlfLAPTKPLV~Qh~~~~~~v~~ip~~~i~ 90 (542)
T COG1111 16 PRLYQLNIAAKALF-KNTLVVLPTGLGKTFIAAMVIANRLRW----FGGKVLFLAPTKPLVLQHAEFCRKVTGIPEDEIA 90 (542)
T ss_pred HHHHHHHHHHHHhh-cCeEEEecCCccHHHHHHHHHHHHHHh----cCCeEEEecCCchHHHHHHHHHHHHhCCChhhee
Confidence 34566666665544 488999999999999998888766533 2238999999999999999999999987655443
Q ss_pred ee--eeeecc--ccCCCcEEEEEccHHHHHHHhcCC-CCCCccEEEEeCCCcCCCcchHHHHHHHHHcccCCCCcEEEec
Q 001817 379 GY--KVRLEG--MKGRDTRLMFCTTGILLRRLLVDR-SLRGVTHVIVDEIHERGMNEDFLLIVLKELLPRRPELRLILMS 453 (1009)
Q Consensus 379 Gy--~vr~e~--~~~~~t~Iiv~T~g~Ll~~L~~~~-~l~~is~IIIDEaHeR~~~~d~ll~llk~ll~~~~~lkvIlmS 453 (1009)
.. .++.+. ......+|+|+||+++.+-|..+. .+.++++||+|||| |....--.-.+.+..+....++.+++||
T Consensus 91 ~ltGev~p~~R~~~w~~~kVfvaTPQvveNDl~~Grid~~dv~~lifDEAH-RAvGnyAYv~Va~~y~~~~k~~~ilgLT 169 (542)
T COG1111 91 ALTGEVRPEEREELWAKKKVFVATPQVVENDLKAGRIDLDDVSLLIFDEAH-RAVGNYAYVFVAKEYLRSAKNPLILGLT 169 (542)
T ss_pred eecCCCChHHHHHHHhhCCEEEeccHHHHhHHhcCccChHHceEEEechhh-hccCcchHHHHHHHHHHhccCceEEEEe
Confidence 32 122221 122467899999999999998877 89999999999999 6555555556666677777888999999
Q ss_pred cCC--CHHHHHhhhCCCCeeccCC----------cccceeeEeh--------hhHHHHhhhccCc----cccc---ccc-
Q 001817 454 ATL--NAELFSSYFGGAPMLHIPG----------FTYPVRAYFL--------ENILEMTRYRLNT----YNQI---DDY- 505 (1009)
Q Consensus 454 ATl--~~~~~~~yf~~~pvi~i~g----------~~~pv~~~yl--------~~i~~~~~~~~~~----~~~i---~~~- 505 (1009)
||+ +.+.+.+-..+--+-+|+- ....+++.+. +++.+..+..+.+ -.+. ...
T Consensus 170 ASPGs~~ekI~eV~~nLgIe~vevrTE~d~DV~~Yv~~~kve~ikV~lp~e~~~ir~~l~~~l~~~Lk~L~~~g~~~~~~ 249 (542)
T COG1111 170 ASPGSDLEKIQEVVENLGIEKVEVRTEEDPDVRPYVKKIKVEWIKVDLPEEIKEIRDLLRDALKPRLKPLKELGVIESSS 249 (542)
T ss_pred cCCCCCHHHHHHHHHhCCcceEEEecCCCccHHHhhccceeEEEeccCcHHHHHHHHHHHHHHHHHHHHHHHcCceeccC
Confidence 999 6666766655322222211 1123333321 1222221111110 0000 000
Q ss_pred --hhhhHHHHHHHHHHH--Hhhhh---hH-------------------------HHHHHHHHHHhhhcch----------
Q 001817 506 --GQEKSWKMQKQALAL--RKRKS---SI-------------------------ASAVEDALEAADFREY---------- 543 (1009)
Q Consensus 506 --~~~~~~~~~~~~~~~--~~~~~---~~-------------------------~~~v~~~l~~~~~~~~---------- 543 (1009)
......... +.... ..... ++ ...++..-........
T Consensus 250 ~~~~kdl~~~~-~~~~~~a~~~~~~~~~~l~~~a~~~kl~~a~elletqGi~~~~~Yl~~l~e~~~~~~sk~a~~l~~d~ 328 (542)
T COG1111 250 PVSKKDLLELR-QIRLIMAKNEDSDKFRLLSVLAEAIKLAHALELLETQGIRPFYQYLEKLEEEATKGGSKAAKSLLADP 328 (542)
T ss_pred cccHhHHHHHH-HHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHhcccchHHHHHHhcCh
Confidence 000000000 00000 00000 00 0011110000000000
Q ss_pred -hhhh---hhccccCCCCCcchhhHHHHHHHHHhhcCCCcEEEEcCCHhHHHHHHHHHHcCCCCCCCCC-eEEE----Ee
Q 001817 544 -SVQT---QQSLSCWNPDSIGFNLIEHVLCHIVKKERPGAVLVFMTGWDDINSLKDQLQAHPLLGDPSR-VLLL----AC 614 (1009)
Q Consensus 544 -~~~~---~~~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~~~~i~~l~~~L~~~~~~~~~~~-~~v~----~l 614 (1009)
.... ...+.....+.-.++....++...+++....++|||+.-++.++.+.+.|.+.... .+ ..++ -.
T Consensus 329 ~~~~al~~~~~~~~~~v~HPKl~~l~eilke~~~k~~~~RvIVFT~yRdTae~i~~~L~~~~~~---~~~rFiGQa~r~~ 405 (542)
T COG1111 329 YFKRALRLLIRADESGVEHPKLEKLREILKEQLEKNGDSRVIVFTEYRDTAEEIVNFLKKIGIK---ARVRFIGQASREG 405 (542)
T ss_pred hhHHHHHHHHHhccccCCCccHHHHHHHHHHHHhcCCCceEEEEehhHhHHHHHHHHHHhcCCc---ceeEEeecccccc
Confidence 0000 00011122233445666677777777777789999999999999999999876221 11 0111 12
Q ss_pred cCCCCHHHHHhhcCCCCCCceEEEEecCccccccCCCCeeEEEeCCCCccccccCCCCCCcccccccCHHhHHhhhcccC
Q 001817 615 HGSMASSEQRLIFDKPEDGVRKIVLATNMAETSITINDVVFVIDCGKAKETSYDALNNTPCLLPSWISKAAARQRRGRAG 694 (1009)
Q Consensus 615 Hs~l~~~er~~v~~~f~~G~~kVLVATniae~GIdIp~V~~VId~g~~k~~~yd~~~~~~~l~~~~iS~as~~QR~GRAG 694 (1009)
..||++++|.++++.|++|..+|||||+|+|.|+|||+++.||- |++.. |.--++||.||+|
T Consensus 406 ~~GMsQkeQ~eiI~~Fr~Ge~nVLVaTSVgEEGLDIp~vDlVif--------YEpvp----------SeIR~IQR~GRTG 467 (542)
T COG1111 406 DKGMSQKEQKEIIDQFRKGEYNVLVATSVGEEGLDIPEVDLVIF--------YEPVP----------SEIRSIQRKGRTG 467 (542)
T ss_pred ccccCHHHHHHHHHHHhcCCceEEEEcccccccCCCCcccEEEE--------ecCCc----------HHHHHHHhhCccc
Confidence 35899999999999999999999999999999999999999998 55532 6667889999999
Q ss_pred CCCCCcEEEecchh
Q 001817 695 RVQPGECYHLYPRY 708 (1009)
Q Consensus 695 R~~~G~c~~Lys~~ 708 (1009)
|.++|.+|.|+++.
T Consensus 468 R~r~Grv~vLvt~g 481 (542)
T COG1111 468 RKRKGRVVVLVTEG 481 (542)
T ss_pred cCCCCeEEEEEecC
Confidence 99999999998875
No 53
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=99.97 E-value=1.6e-30 Score=323.42 Aligned_cols=298 Identities=21% Similarity=0.286 Sum_probs=203.4
Q ss_pred CCHHHHHHHHHHHHc------CCeEEEEecCCCchhhhHHHHHHHHHHHHhcCCceEEEechhHHHHHHHHHHHHHHHhC
Q 001817 298 PSYKERDALLKAISE------NQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERG 371 (1009)
Q Consensus 298 Pi~~~q~~il~~l~~------~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~IvvtqPrR~La~qva~rva~e~~ 371 (1009)
|...|+.+| +.+.+ ..+.+++|+||||||.++..+++..+.. + ..+++++||++||.|+++.+.+.+.
T Consensus 452 ~T~~Q~~aI-~~I~~d~~~~~~~d~Ll~adTGsGKT~val~a~l~al~~---g--~qvlvLvPT~~LA~Q~~~~f~~~~~ 525 (926)
T TIGR00580 452 ETPDQLKAI-EEIKADMESPRPMDRLVCGDVGFGKTEVAMRAAFKAVLD---G--KQVAVLVPTTLLAQQHFETFKERFA 525 (926)
T ss_pred CCHHHHHHH-HHHHhhhcccCcCCEEEECCCCccHHHHHHHHHHHHHHh---C--CeEEEEeCcHHHHHHHHHHHHHHhc
Confidence 555555555 44544 3689999999999999999888876532 2 4677777999999999999987764
Q ss_pred Ccccceeeeeeeec----------cccCCCcEEEEEccHHHHHHHhcCCCCCCccEEEEeCCCcCCCcchHHHHHHHHHc
Q 001817 372 EKLGESVGYKVRLE----------GMKGRDTRLMFCTTGILLRRLLVDRSLRGVTHVIVDEIHERGMNEDFLLIVLKELL 441 (1009)
Q Consensus 372 ~~~g~~vGy~vr~e----------~~~~~~t~Iiv~T~g~Ll~~L~~~~~l~~is~IIIDEaHeR~~~~d~ll~llk~ll 441 (1009)
. .+..++.-.++. .......+|+|+||..+ ..+-.++++++|||||+|+.+... ...+.
T Consensus 526 ~-~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~ll----~~~v~f~~L~llVIDEahrfgv~~------~~~L~ 594 (926)
T TIGR00580 526 N-FPVTIELLSRFRSAKEQNEILKELASGKIDILIGTHKLL----QKDVKFKDLGLLIIDEEQRFGVKQ------KEKLK 594 (926)
T ss_pred c-CCcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHHh----hCCCCcccCCEEEeecccccchhH------HHHHH
Confidence 2 232232211111 11223579999999533 333468899999999999743321 12222
Q ss_pred ccCCCCcEEEeccCCCHHHHHhhh-CC--CCeeccC-CcccceeeEehhhHHHHhhhccCcccccccchhhhHHHHHHHH
Q 001817 442 PRRPELRLILMSATLNAELFSSYF-GG--APMLHIP-GFTYPVRAYFLENILEMTRYRLNTYNQIDDYGQEKSWKMQKQA 517 (1009)
Q Consensus 442 ~~~~~lkvIlmSATl~~~~~~~yf-~~--~pvi~i~-g~~~pv~~~yl~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 517 (1009)
...++.++++||||+.+..+...+ +. ..++..+ ....|+..++.+. ..
T Consensus 595 ~~~~~~~vL~~SATpiprtl~~~l~g~~d~s~I~~~p~~R~~V~t~v~~~------------------~~---------- 646 (926)
T TIGR00580 595 ELRTSVDVLTLSATPIPRTLHMSMSGIRDLSIIATPPEDRLPVRTFVMEY------------------DP---------- 646 (926)
T ss_pred hcCCCCCEEEEecCCCHHHHHHHHhcCCCcEEEecCCCCccceEEEEEec------------------CH----------
Confidence 334678899999998666544322 21 1122221 1123343332210 00
Q ss_pred HHHHhhhhhHHHHHHHHHHHhhhcchhhhhhhccccCCCCCcchhhHHHHHHHHHhhcCCCcEEEEcCCHhHHHHHHHHH
Q 001817 518 LALRKRKSSIASAVEDALEAADFREYSVQTQQSLSCWNPDSIGFNLIEHVLCHIVKKERPGAVLVFMTGWDDINSLKDQL 597 (1009)
Q Consensus 518 ~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~~~~i~~l~~~L 597 (1009)
..+ ...+...+ ...++++||+++.++++.+++.|
T Consensus 647 -----------~~i--------------------------------~~~i~~el---~~g~qv~if~n~i~~~e~l~~~L 680 (926)
T TIGR00580 647 -----------ELV--------------------------------REAIRREL---LRGGQVFYVHNRIESIEKLATQL 680 (926)
T ss_pred -----------HHH--------------------------------HHHHHHHH---HcCCeEEEEECCcHHHHHHHHHH
Confidence 000 00111111 13578999999999999999999
Q ss_pred HcCCCCCCCCCeEEEEecCCCCHHHHHhhcCCCCCCceEEEEecCccccccCCCCeeEEEeCCCCccccccCCCCCCccc
Q 001817 598 QAHPLLGDPSRVLLLACHGSMASSEQRLIFDKPEDGVRKIVLATNMAETSITINDVVFVIDCGKAKETSYDALNNTPCLL 677 (1009)
Q Consensus 598 ~~~~~~~~~~~~~v~~lHs~l~~~er~~v~~~f~~G~~kVLVATniae~GIdIp~V~~VId~g~~k~~~yd~~~~~~~l~ 677 (1009)
.... +++.+..+||+|+.++|..+++.|++|+.+|||||+++|+|||+|++++||..+.+.
T Consensus 681 ~~~~-----p~~~v~~lHG~m~~~eRe~im~~F~~Gk~~ILVaT~iie~GIDIp~v~~VIi~~a~~-------------- 741 (926)
T TIGR00580 681 RELV-----PEARIAIAHGQMTENELEEVMLEFYKGEFQVLVCTTIIETGIDIPNANTIIIERADK-------------- 741 (926)
T ss_pred HHhC-----CCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEECChhhcccccccCCEEEEecCCC--------------
Confidence 8741 256799999999999999999999999999999999999999999999999854432
Q ss_pred ccccCHHhHHhhhcccCCCC-CCcEEEecchh
Q 001817 678 PSWISKAAARQRRGRAGRVQ-PGECYHLYPRY 708 (1009)
Q Consensus 678 ~~~iS~as~~QR~GRAGR~~-~G~c~~Lys~~ 708 (1009)
.+-+++.||+||+||.+ .|.||.+++..
T Consensus 742 ---~gls~l~Qr~GRvGR~g~~g~aill~~~~ 770 (926)
T TIGR00580 742 ---FGLAQLYQLRGRVGRSKKKAYAYLLYPHQ 770 (926)
T ss_pred ---CCHHHHHHHhcCCCCCCCCeEEEEEECCc
Confidence 14457889999999984 69999998753
No 54
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=99.97 E-value=3.7e-31 Score=312.42 Aligned_cols=480 Identities=19% Similarity=0.233 Sum_probs=302.0
Q ss_pred HHHHHHHHHcCCeEEEEecCCCchhhhHHHHHHHHHHHHh-----cCCceEEEechhHHHHHHHHHHHHHHHhC---Ccc
Q 001817 303 RDALLKAISENQVVVVSGETGCGKTTQLPQYILESETEAA-----RGAACSIICTQPRRISAMAVSERVAAERG---EKL 374 (1009)
Q Consensus 303 q~~il~~l~~~~~vII~apTGSGKTt~~~~~ile~~~~~~-----~~~~~~IvvtqPrR~La~qva~rva~e~~---~~~ 374 (1009)
......+...|.|.|||||||||||-.+.+.|+..+.+.. ....-+||+++|.++||.++++.+.+.++ ..+
T Consensus 116 S~vFp~aY~SneNMLIcAPTGsGKT~la~L~ILr~ik~~~~~~~i~k~~fKiVYIaPmKALa~Em~~~~~kkl~~~gi~v 195 (1230)
T KOG0952|consen 116 SEVFPVAYKSNENMLICAPTGSGKTVLAELCILRTIKEHEEQGDIAKDDFKIVYIAPMKALAAEMVDKFSKKLAPLGISV 195 (1230)
T ss_pred HHhhhhhhcCCCCEEEECCCCCCchHHHHHHHHHHHHhhccccccccCCceEEEEechHHHHHHHHHHHhhhcccccceE
Confidence 3455566778999999999999999999999998775411 12346899999999999999999988763 444
Q ss_pred cceeeeeeeeccccCCCcEEEEEccHHH---HHHHhcCC-CCCCccEEEEeCCC----cCCCcchHHHHHHHHHc-ccCC
Q 001817 375 GESVGYKVRLEGMKGRDTRLMFCTTGIL---LRRLLVDR-SLRGVTHVIVDEIH----ERGMNEDFLLIVLKELL-PRRP 445 (1009)
Q Consensus 375 g~~vGy~vr~e~~~~~~t~Iiv~T~g~L---l~~L~~~~-~l~~is~IIIDEaH----eR~~~~d~ll~llk~ll-~~~~ 445 (1009)
....|- ..+....-.+|+|+|+||+.. -|.-..+. .++.+.+|||||+| +||.-.+.+.+...++. ....
T Consensus 196 ~ELTGD-~ql~~tei~~tqiiVTTPEKwDvvTRk~~~d~~l~~~V~LviIDEVHlLhd~RGpvlEtiVaRtlr~vessqs 274 (1230)
T KOG0952|consen 196 RELTGD-TQLTKTEIADTQIIVTTPEKWDVVTRKSVGDSALFSLVRLVIIDEVHLLHDDRGPVLETIVARTLRLVESSQS 274 (1230)
T ss_pred EEecCc-chhhHHHHHhcCEEEecccceeeeeeeeccchhhhhheeeEEeeeehhhcCcccchHHHHHHHHHHHHHhhhh
Confidence 444552 112222246799999999764 22222222 67889999999999 58777776655554443 3556
Q ss_pred CCcEEEeccCC-CHHHHHhhhCCCC---eeccCCcccceee--EehhhHHHHhhhccCcccccccchhhhHHHHHHHHHH
Q 001817 446 ELRLILMSATL-NAELFSSYFGGAP---MLHIPGFTYPVRA--YFLENILEMTRYRLNTYNQIDDYGQEKSWKMQKQALA 519 (1009)
Q Consensus 446 ~lkvIlmSATl-~~~~~~~yf~~~p---vi~i~g~~~pv~~--~yl~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 519 (1009)
.+|+|++|||+ |.++++.|++-.| ++...++.-||.. .++- +...
T Consensus 275 ~IRivgLSATlPN~eDvA~fL~vn~~~glfsFd~~yRPvpL~~~~iG-------~k~~---------------------- 325 (1230)
T KOG0952|consen 275 MIRIVGLSATLPNYEDVARFLRVNPYAGLFSFDQRYRPVPLTQGFIG-------IKGK---------------------- 325 (1230)
T ss_pred heEEEEeeccCCCHHHHHHHhcCCCccceeeecccccccceeeeEEe-------eecc----------------------
Confidence 78999999999 8999999998533 4444444444432 2210 0000
Q ss_pred HHhhhhhHHHHHHHHHHHhhhcchhhhhhhccccCCCCCcchhhHHHHHHHHHhhcCCCcEEEEcCCHhHHHHHHHHHHc
Q 001817 520 LRKRKSSIASAVEDALEAADFREYSVQTQQSLSCWNPDSIGFNLIEHVLCHIVKKERPGAVLVFMTGWDDINSLKDQLQA 599 (1009)
Q Consensus 520 ~~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~~~~i~~l~~~L~~ 599 (1009)
........+.+.. ..+ +.+.+. ++.+++|||+++.+..+.++.|.+
T Consensus 326 ---~~~~~~~~~d~~~----------------------------~~k-v~e~~~--~g~qVlvFvhsR~~Ti~tA~~l~~ 371 (1230)
T KOG0952|consen 326 ---KNRQQKKNIDEVC----------------------------YDK-VVEFLQ--EGHQVLVFVHSRNETIRTAKKLRE 371 (1230)
T ss_pred ---cchhhhhhHHHHH----------------------------HHH-HHHHHH--cCCeEEEEEecChHHHHHHHHHHH
Confidence 0000000000000 001 112222 456899999999999999888875
Q ss_pred CCC--------CCCC-CC-------eEEEEecCCCCHHHHHhhcCCCCCCceEEEEecCccccccCCCCeeEEEeCCCCc
Q 001817 600 HPL--------LGDP-SR-------VLLLACHGSMASSEQRLIFDKPEDGVRKIVLATNMAETSITINDVVFVIDCGKAK 663 (1009)
Q Consensus 600 ~~~--------~~~~-~~-------~~v~~lHs~l~~~er~~v~~~f~~G~~kVLVATniae~GIdIp~V~~VId~g~~k 663 (1009)
... .... .+ ..+..||+||...+|..++..|..|.++|++||.+++.|+|+|+-.++|- .
T Consensus 372 ~a~~~g~~~~f~~~~~~k~l~elf~~g~~iHhAGm~r~DR~l~E~~F~~G~i~vL~cTaTLAwGVNLPA~aViIK----G 447 (1230)
T KOG0952|consen 372 RAETNGEKDLFLPSPRNKQLKELFQQGMGIHHAGMLRSDRQLVEKEFKEGHIKVLCCTATLAWGVNLPAYAVIIK----G 447 (1230)
T ss_pred HHHhcCcccccCCChhhHHHHHHHHhhhhhcccccchhhHHHHHHHHhcCCceEEEecceeeeccCCcceEEEec----C
Confidence 311 1111 12 56888999999999999999999999999999999999999998887774 3
Q ss_pred cccccCCCCCCcccccccCHHhHHhhhcccCCCC---CCcEEEecchh---hhhhhc---------------cCCCcccc
Q 001817 664 ETSYDALNNTPCLLPSWISKAAARQRRGRAGRVQ---PGECYHLYPRY---VYDAFA---------------DYQLPELL 722 (1009)
Q Consensus 664 ~~~yd~~~~~~~l~~~~iS~as~~QR~GRAGR~~---~G~c~~Lys~~---~~~~l~---------------~~~~PEi~ 722 (1009)
...||+..+.-.-. +.....|..|||||++ .|..+.+-+.+ .|..|. ++-..||-
T Consensus 448 T~~ydsskg~f~dl----gilDVlQifGRAGRPqFd~~G~giIiTt~dkl~~Y~sLl~~~~piES~~~~~L~dnLnAEi~ 523 (1230)
T KOG0952|consen 448 TQVYDSSKGSFVDL----GILDVLQIFGRAGRPQFDSSGEGIIITTRDKLDHYESLLTGQNPIESQLLPCLIDNLNAEIS 523 (1230)
T ss_pred CcccccccCceeee----hHHHHHHHHhccCCCCCCCCceEEEEecccHHHHHHHHHcCCChhHHHHHHHHHHhhhhhee
Confidence 45688887654333 6778899999999994 58777775543 344433 33334443
Q ss_pred ccCchhhhhHhhhcCc--------CCHHHHH--HhhcCC-CCh-----hhHHHHHHHHHHhccc--cCCC---CcChhhh
Q 001817 723 RTPLQSLCLQIKSLQL--------GSISEFL--SRALQP-PEP-----LSVKNAIEYLQIIGAL--DENE---NLTVLGR 781 (1009)
Q Consensus 723 r~~L~~~~L~lk~l~~--------~~~~~fl--~~~l~p-P~~-----~~v~~al~~L~~lgal--d~~~---~lT~lG~ 781 (1009)
.-.++++--.+..|+. .++..+= -..+.+ |.. +.+..++..|.....+ |..+ +.|++||
T Consensus 524 LgTVt~VdeAVeWL~yTylYVRm~KNP~~Ygi~~~~l~~dp~l~s~~~~l~~~~~~~L~~~qmi~~D~~t~~~~stdlGR 603 (1230)
T KOG0952|consen 524 LGTVTNVDEAVEWLKYTYLYVRMRKNPMAYGISYEELEPDPRLESHRRELCLVAAMELDKVQMIRFDERTGYLKSTDLGR 603 (1230)
T ss_pred eceeecHHHHHHHhhceeEEEEeccChHHhhhhhhcccCCchHHHHHHHHHHHHHHHhhhhheEEEecccceEcccchhh
Confidence 3322222212211111 1111110 011111 111 1344555566555333 4332 5899999
Q ss_pred hcccCCCChhHHHHHHHhhh-hCCcchHHHHHHhhcCCCccccCcChHHHHHHH------HhhhccCChhhHHHHHHHHH
Q 001817 782 NLSMLPVEPKLGKMLILGAI-FNCLDPVMTVVAGLSVRDPFLMPFDKKDLAESA------KAQFSARDYSDHLALVRAYD 854 (1009)
Q Consensus 782 ~ls~lpl~p~~~k~ll~~~~-~~c~~~~l~i~a~ls~~~~f~~p~~~~~~~~~~------~~~f~~~~~sDhl~~l~~f~ 854 (1009)
.++.+++..+.-+.++.... +--.+++|.++|.-+.-+-.-.-.++++..+.. +..|.+ ..++--.++++|.
T Consensus 604 ~aS~yYik~ETme~~nn~~k~~~se~~iL~lis~aeEfs~ik~R~eE~k~l~el~~~~~~~~~~~~-~~gk~nil~q~~I 682 (1230)
T KOG0952|consen 604 VASNYYIKYETMETFNNLPKSFYSEDDILALISMAEEFSQIKVREEEKKELKELNEDSCEKYPFGG-EKGKVNILLQAYI 682 (1230)
T ss_pred hhhhhhhhhHHHHHHHhcccccCCHHHHHHHHHhhHhhhhhhhhhhhHHHHHHHHhcccccccccc-cchhHHHHHHhhh
Confidence 99999999999999998876 667788888777654322211111222222222 233332 3577777777764
Q ss_pred H
Q 001817 855 G 855 (1009)
Q Consensus 855 ~ 855 (1009)
.
T Consensus 683 s 683 (1230)
T KOG0952|consen 683 S 683 (1230)
T ss_pred h
Confidence 3
No 55
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.97 E-value=5.7e-31 Score=281.33 Aligned_cols=325 Identities=19% Similarity=0.239 Sum_probs=232.6
Q ss_pred HHHHhhcCCCCHHHHHHHHHHHHc-CCeEEEEecCCCchhhhHHHHHHHHHHHHhcCCceEEEechhHHHHHHHHHHHHH
Q 001817 289 KMLEFRRSLPSYKERDALLKAISE-NQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVA 367 (1009)
Q Consensus 289 ~l~~~r~~LPi~~~q~~il~~l~~-~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~IvvtqPrR~La~qva~rva 367 (1009)
.+.......|...|..++.-.+.+ .+++|.++..|+|||+++.+.+|..+... -..+..+|+.|+|+||.|+-+.+
T Consensus 104 gly~M~F~kPskIQe~aLPlll~~Pp~nlIaQsqsGtGKTaaFvL~MLsrvd~~--~~~PQ~iCLaPtrELA~Q~~eVv- 180 (477)
T KOG0332|consen 104 GLYAMKFQKPSKIQETALPLLLAEPPQNLIAQSQSGTGKTAAFVLTMLSRVDPD--VVVPQCICLAPTRELAPQTGEVV- 180 (477)
T ss_pred HHHHhccCCcchHHHhhcchhhcCCchhhhhhhcCCCchhHHHHHHHHHhcCcc--ccCCCceeeCchHHHHHHHHHHH-
Confidence 344455677887775554444433 57999999999999999999999876432 23456677789999999998766
Q ss_pred HHhCCcccceeeeeeeeccccC---CCcEEEEEccHHHHHHHhcCC--CCCCccEEEEeCCCcCCCcch-HHHHHHHHHc
Q 001817 368 AERGEKLGESVGYKVRLEGMKG---RDTRLMFCTTGILLRRLLVDR--SLRGVTHVIVDEIHERGMNED-FLLIVLKELL 441 (1009)
Q Consensus 368 ~e~~~~~g~~vGy~vr~e~~~~---~~t~Iiv~T~g~Ll~~L~~~~--~l~~is~IIIDEaHeR~~~~d-~ll~llk~ll 441 (1009)
.++|...+....|.++...... -..+|+++|||.+++++..-. .++.+.++|+|||+.. ++++ |-..-++...
T Consensus 181 ~eMGKf~~ita~yair~sk~~rG~~i~eqIviGTPGtv~Dlm~klk~id~~kikvfVlDEAD~M-i~tqG~~D~S~rI~~ 259 (477)
T KOG0332|consen 181 EEMGKFTELTASYAIRGSKAKRGNKLTEQIVIGTPGTVLDLMLKLKCIDLEKIKVFVLDEADVM-IDTQGFQDQSIRIMR 259 (477)
T ss_pred HHhcCceeeeEEEEecCcccccCCcchhheeeCCCccHHHHHHHHHhhChhhceEEEecchhhh-hhcccccccchhhhh
Confidence 6677766667778888763332 236899999999999887633 6889999999999942 2222 1111122222
Q ss_pred ccCCCCcEEEeccCCCH--HHHHhh-hCCCCeeccCCc---ccceeeEehhhHHHHhhhccCcccccccchhhhHHHHHH
Q 001817 442 PRRPELRLILMSATLNA--ELFSSY-FGGAPMLHIPGF---TYPVRAYFLENILEMTRYRLNTYNQIDDYGQEKSWKMQK 515 (1009)
Q Consensus 442 ~~~~~lkvIlmSATl~~--~~~~~y-f~~~pvi~i~g~---~~pv~~~yl~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~ 515 (1009)
...++.|++++|||.+. ..|+.- ..++.++.+..+ .+++..+|+.
T Consensus 260 ~lP~~~QllLFSATf~e~V~~Fa~kivpn~n~i~Lk~eel~L~~IkQlyv~----------------------------- 310 (477)
T KOG0332|consen 260 SLPRNQQLLLFSATFVEKVAAFALKIVPNANVIILKREELALDNIKQLYVL----------------------------- 310 (477)
T ss_pred hcCCcceEEeeechhHHHHHHHHHHhcCCCceeeeehhhccccchhhheee-----------------------------
Confidence 22358999999999843 333332 223322222211 1222222211
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHhhhcchhhhhhhccccCCCCCcchhhHHHHHHHHHhhcCCCcEEEEcCCHhHHHHHHH
Q 001817 516 QALALRKRKSSIASAVEDALEAADFREYSVQTQQSLSCWNPDSIGFNLIEHVLCHIVKKERPGAVLVFMTGWDDINSLKD 595 (1009)
Q Consensus 516 ~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~~~~i~~l~~ 595 (1009)
+..-+.+.+.+..+..-..-|..+|||.++..+.+++.
T Consensus 311 ------------------------------------------C~~~~~K~~~l~~lyg~~tigqsiIFc~tk~ta~~l~~ 348 (477)
T KOG0332|consen 311 ------------------------------------------CACRDDKYQALVNLYGLLTIGQSIIFCHTKATAMWLYE 348 (477)
T ss_pred ------------------------------------------ccchhhHHHHHHHHHhhhhhhheEEEEeehhhHHHHHH
Confidence 11112233445555555667899999999999999999
Q ss_pred HHHcCCCCCCCCCeEEEEecCCCCHHHHHhhcCCCCCCceEEEEecCccccccCCCCeeEEEeCCCCccccccCCCCCCc
Q 001817 596 QLQAHPLLGDPSRVLLLACHGSMASSEQRLIFDKPEDGVRKIVLATNMAETSITINDVVFVIDCGKAKETSYDALNNTPC 675 (1009)
Q Consensus 596 ~L~~~~~~~~~~~~~v~~lHs~l~~~er~~v~~~f~~G~~kVLVATniae~GIdIp~V~~VId~g~~k~~~yd~~~~~~~ 675 (1009)
.+... +..|..+||.|..++|..+.+.|+.|.-||||+||+.++|||++.|++|||+++|-... .
T Consensus 349 ~m~~~-------Gh~V~~l~G~l~~~~R~~ii~~Fr~g~~kVLitTnV~ARGiDv~qVs~VvNydlP~~~~--~------ 413 (477)
T KOG0332|consen 349 EMRAE-------GHQVSLLHGDLTVEQRAAIIDRFREGKEKVLITTNVCARGIDVAQVSVVVNYDLPVKYT--G------ 413 (477)
T ss_pred HHHhc-------CceeEEeeccchhHHHHHHHHHHhcCcceEEEEechhhcccccceEEEEEecCCccccC--C------
Confidence 99987 78899999999999999999999999999999999999999999999999988874211 1
Q ss_pred ccccccCHHhHHhhhcccCCCCC-CcEEEecch
Q 001817 676 LLPSWISKAAARQRRGRAGRVQP-GECYHLYPR 707 (1009)
Q Consensus 676 l~~~~iS~as~~QR~GRAGR~~~-G~c~~Lys~ 707 (1009)
--+...|.||+||+||.|. |.+|.|...
T Consensus 414 ----~pD~etYlHRiGRtGRFGkkG~a~n~v~~ 442 (477)
T KOG0332|consen 414 ----EPDYETYLHRIGRTGRFGKKGLAINLVDD 442 (477)
T ss_pred ----CCCHHHHHHHhcccccccccceEEEeecc
Confidence 1266789999999999965 999998654
No 56
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.97 E-value=1.9e-31 Score=286.66 Aligned_cols=328 Identities=19% Similarity=0.212 Sum_probs=238.4
Q ss_pred HHHHhhcCCCCHHHHHHHHHHHHcCCeEEEEecCCCchhhhHHHHHHHHHHH----HhcCCceEEEechhHHHHHHHHHH
Q 001817 289 KMLEFRRSLPSYKERDALLKAISENQVVVVSGETGCGKTTQLPQYILESETE----AARGAACSIICTQPRRISAMAVSE 364 (1009)
Q Consensus 289 ~l~~~r~~LPi~~~q~~il~~l~~~~~vII~apTGSGKTt~~~~~ile~~~~----~~~~~~~~IvvtqPrR~La~qva~ 364 (1009)
++.+.-..-|...|.++ ...+.++.+++.+|.||+|||+.++++-+.++.. .+...++.++++.|||+||.|+.-
T Consensus 234 nIkK~GFqKPtPIqSQa-WPI~LQG~DliGVAQTgtgKtL~~L~pg~ihi~aqp~~~~qr~~p~~lvl~ptreLalqie~ 312 (629)
T KOG0336|consen 234 NIKKTGFQKPTPIQSQA-WPILLQGIDLIGVAQTGTGKTLAFLLPGFIHIDAQPKRREQRNGPGVLVLTPTRELALQIEG 312 (629)
T ss_pred HHHhccCCCCCcchhcc-cceeecCcceEEEEecCCCcCHHHhccceeeeeccchhhhccCCCceEEEeccHHHHHHHHh
Confidence 34444455677666554 4556799999999999999999988765544432 123345678888899999999988
Q ss_pred HHHHHhC--Ccccceeeeeeeeccc--cCCCcEEEEEccHHHHHHHhcCC-CCCCccEEEEeCCCcCCCcchHHHHHHHH
Q 001817 365 RVAAERG--EKLGESVGYKVRLEGM--KGRDTRLMFCTTGILLRRLLVDR-SLRGVTHVIVDEIHERGMNEDFLLIVLKE 439 (1009)
Q Consensus 365 rva~e~~--~~~g~~vGy~vr~e~~--~~~~t~Iiv~T~g~Ll~~L~~~~-~l~~is~IIIDEaHeR~~~~d~ll~llk~ 439 (1009)
.+.++.- ...-...|-..|.+.. ......|+++|||.|.++...+- .|..++++|+|||+ |.+++.|-..+.+.
T Consensus 313 e~~kysyng~ksvc~ygggnR~eqie~lkrgveiiiatPgrlndL~~~n~i~l~siTYlVlDEAD-rMLDMgFEpqIrki 391 (629)
T KOG0336|consen 313 EVKKYSYNGLKSVCVYGGGNRNEQIEDLKRGVEIIIATPGRLNDLQMDNVINLASITYLVLDEAD-RMLDMGFEPQIRKI 391 (629)
T ss_pred HHhHhhhcCcceEEEecCCCchhHHHHHhcCceEEeeCCchHhhhhhcCeeeeeeeEEEEecchh-hhhcccccHHHHHH
Confidence 8877652 2222222322333221 23568999999999988777665 89999999999999 66999999999999
Q ss_pred HcccCCCCcEEEeccCCCHH--HHH-hhhCCCCeeccCCcccceeeEehhhHHHHhhhccCcccccccchhhhHHHHHHH
Q 001817 440 LLPRRPELRLILMSATLNAE--LFS-SYFGGAPMLHIPGFTYPVRAYFLENILEMTRYRLNTYNQIDDYGQEKSWKMQKQ 516 (1009)
Q Consensus 440 ll~~~~~lkvIlmSATl~~~--~~~-~yf~~~pvi~i~g~~~pv~~~yl~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 516 (1009)
++..+|+.++++.|||.+.. .++ +|+. .|++..-|..--+...-.... .+...
T Consensus 392 lldiRPDRqtvmTSATWP~~VrrLa~sY~K-ep~~v~vGsLdL~a~~sVkQ~------------i~v~~----------- 447 (629)
T KOG0336|consen 392 LLDIRPDRQTVMTSATWPEGVRRLAQSYLK-EPMIVYVGSLDLVAVKSVKQN------------IIVTT----------- 447 (629)
T ss_pred hhhcCCcceeeeecccCchHHHHHHHHhhh-CceEEEecccceeeeeeeeee------------EEecc-----------
Confidence 99999999999999999643 444 4554 455555444322211111100 00000
Q ss_pred HHHHHhhhhhHHHHHHHHHHHhhhcchhhhhhhccccCCCCCcchhhHHHHHHHHHhh-cCCCcEEEEcCCHhHHHHHHH
Q 001817 517 ALALRKRKSSIASAVEDALEAADFREYSVQTQQSLSCWNPDSIGFNLIEHVLCHIVKK-ERPGAVLVFMTGWDDINSLKD 595 (1009)
Q Consensus 517 ~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~-~~~g~iLVFl~~~~~i~~l~~ 595 (1009)
...+..++..+..+ ....++||||..+..+..|..
T Consensus 448 --------------------------------------------d~~k~~~~~~f~~~ms~ndKvIiFv~~K~~AD~LSS 483 (629)
T KOG0336|consen 448 --------------------------------------------DSEKLEIVQFFVANMSSNDKVIIFVSRKVMADHLSS 483 (629)
T ss_pred --------------------------------------------cHHHHHHHHHHHHhcCCCceEEEEEechhhhhhccc
Confidence 00011122222332 345799999999988888777
Q ss_pred HHHcCCCCCCCCCeEEEEecCCCCHHHHHhhcCCCCCCceEEEEecCccccccCCCCeeEEEeCCCCccccccCCCCCCc
Q 001817 596 QLQAHPLLGDPSRVLLLACHGSMASSEQRLIFDKPEDGVRKIVLATNMAETSITINDVVFVIDCGKAKETSYDALNNTPC 675 (1009)
Q Consensus 596 ~L~~~~~~~~~~~~~v~~lHs~l~~~er~~v~~~f~~G~~kVLVATniae~GIdIp~V~~VId~g~~k~~~yd~~~~~~~ 675 (1009)
-+.-. ++..-.+||+-.+.+|+..++.|++|+++|||||++|.+|+|+|||++|+|+++|.
T Consensus 484 d~~l~-------gi~~q~lHG~r~Q~DrE~al~~~ksG~vrILvaTDlaSRGlDv~DiTHV~NyDFP~------------ 544 (629)
T KOG0336|consen 484 DFCLK-------GISSQSLHGNREQSDREMALEDFKSGEVRILVATDLASRGLDVPDITHVYNYDFPR------------ 544 (629)
T ss_pred hhhhc-------ccchhhccCChhhhhHHHHHHhhhcCceEEEEEechhhcCCCchhcceeeccCCCc------------
Confidence 76654 67788999999999999999999999999999999999999999999999988887
Q ss_pred ccccccCHHhHHhhhcccCCCC-CCcEEEecchhhhh
Q 001817 676 LLPSWISKAAARQRRGRAGRVQ-PGECYHLYPRYVYD 711 (1009)
Q Consensus 676 l~~~~iS~as~~QR~GRAGR~~-~G~c~~Lys~~~~~ 711 (1009)
...+|.||+||+||.| .|..+.+++..++.
T Consensus 545 ------nIeeYVHRvGrtGRaGr~G~sis~lt~~D~~ 575 (629)
T KOG0336|consen 545 ------NIEEYVHRVGRTGRAGRTGTSISFLTRNDWS 575 (629)
T ss_pred ------cHHHHHHHhcccccCCCCcceEEEEehhhHH
Confidence 6678999999999995 59999999987664
No 57
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.97 E-value=2.3e-30 Score=284.90 Aligned_cols=321 Identities=20% Similarity=0.239 Sum_probs=234.4
Q ss_pred CCCCHHHHHHHHHHHHcCCeEEEEecCCCchhhhHHHHHHHHHHHHh---cCCceEEEechhHHHHHHHHHHHHHHHhCC
Q 001817 296 SLPSYKERDALLKAISENQVVVVSGETGCGKTTQLPQYILESETEAA---RGAACSIICTQPRRISAMAVSERVAAERGE 372 (1009)
Q Consensus 296 ~LPi~~~q~~il~~l~~~~~vII~apTGSGKTt~~~~~ile~~~~~~---~~~~~~IvvtqPrR~La~qva~rva~e~~~ 372 (1009)
.-|...| ..+++....+++|+-.|-||||||.++..+++.+++... .|.++..|+++|||+||.|+.....+ ++.
T Consensus 244 ~kptpiq-~qalptalsgrdvigIAktgSgktaAfi~pm~~himdq~eL~~g~gPi~vilvPTrela~Qi~~eaKk-f~K 321 (731)
T KOG0339|consen 244 EKPTPIQ-CQALPTALSGRDVIGIAKTGSGKTAAFIWPMIVHIMDQPELKPGEGPIGVILVPTRELASQIFSEAKK-FGK 321 (731)
T ss_pred ccCCccc-ccccccccccccchheeeccCcchhHHHHHHHHHhcchhhhcCCCCCeEEEEeccHHHHHHHHHHHHH-hhh
Confidence 3455554 555666678999999999999999999999888776432 35556666666999999999876544 333
Q ss_pred ccccee--eeeeee--c--cccCCCcEEEEEccHHHHHHHhcCC-CCCCccEEEEeCCCcCCCcchHHHHHHHHHcccCC
Q 001817 373 KLGESV--GYKVRL--E--GMKGRDTRLMFCTTGILLRRLLVDR-SLRGVTHVIVDEIHERGMNEDFLLIVLKELLPRRP 445 (1009)
Q Consensus 373 ~~g~~v--Gy~vr~--e--~~~~~~t~Iiv~T~g~Ll~~L~~~~-~l~~is~IIIDEaHeR~~~~d~ll~llk~ll~~~~ 445 (1009)
..|..+ -|.-.- + +.....+.|+|||||+|++++.-.. .+.+++++||||++ |..+..|...+-...-..+|
T Consensus 322 ~ygl~~v~~ygGgsk~eQ~k~Lk~g~EivVaTPgRlid~VkmKatn~~rvS~LV~DEad-rmfdmGfe~qVrSI~~hirp 400 (731)
T KOG0339|consen 322 AYGLRVVAVYGGGSKWEQSKELKEGAEIVVATPGRLIDMVKMKATNLSRVSYLVLDEAD-RMFDMGFEPQVRSIKQHIRP 400 (731)
T ss_pred hccceEEEeecCCcHHHHHHhhhcCCeEEEechHHHHHHHHhhcccceeeeEEEEechh-hhhccccHHHHHHHHhhcCC
Confidence 333221 122111 1 1112678999999999999987655 89999999999999 66788887777666667899
Q ss_pred CCcEEEeccCCC--HHHHHhhhCCCCeeccCCcccceeeEehhhHHHHhhhccCcccccccchhhhHHHHHHHHHHHHhh
Q 001817 446 ELRLILMSATLN--AELFSSYFGGAPMLHIPGFTYPVRAYFLENILEMTRYRLNTYNQIDDYGQEKSWKMQKQALALRKR 523 (1009)
Q Consensus 446 ~lkvIlmSATl~--~~~~~~yf~~~pvi~i~g~~~pv~~~yl~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 523 (1009)
+.|.|++|||+. .+.+++=+-..|+-.+.|.. ...
T Consensus 401 drQtllFsaTf~~kIe~lard~L~dpVrvVqg~v---gea---------------------------------------- 437 (731)
T KOG0339|consen 401 DRQTLLFSATFKKKIEKLARDILSDPVRVVQGEV---GEA---------------------------------------- 437 (731)
T ss_pred cceEEEeeccchHHHHHHHHHHhcCCeeEEEeeh---hcc----------------------------------------
Confidence 999999999994 44454433333333222210 000
Q ss_pred hhhHHHHHHHHHHHhhhcchhhhhhhccccCCCCCcchhhHHHHHHHHHhhcCCCcEEEEcCCHhHHHHHHHHHHcCCCC
Q 001817 524 KSSIASAVEDALEAADFREYSVQTQQSLSCWNPDSIGFNLIEHVLCHIVKKERPGAVLVFMTGWDDINSLKDQLQAHPLL 603 (1009)
Q Consensus 524 ~~~~~~~v~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~~~~i~~l~~~L~~~~~~ 603 (1009)
.+.+.+.+.. -..+......++.++......|++|+|++.+.+++.++..|...
T Consensus 438 ----n~dITQ~V~V-------------------~~s~~~Kl~wl~~~L~~f~S~gkvlifVTKk~~~e~i~a~Lklk--- 491 (731)
T KOG0339|consen 438 ----NEDITQTVSV-------------------CPSEEKKLNWLLRHLVEFSSEGKVLIFVTKKADAEEIAANLKLK--- 491 (731)
T ss_pred ----ccchhheeee-------------------ccCcHHHHHHHHHHhhhhccCCcEEEEEeccCCHHHHHHHhccc---
Confidence 0000000000 00011223345667777778899999999999999999999876
Q ss_pred CCCCCeEEEEecCCCCHHHHHhhcCCCCCCceEEEEecCccccccCCCCeeEEEeCCCCccccccCCCCCCcccccccCH
Q 001817 604 GDPSRVLLLACHGSMASSEQRLIFDKPEDGVRKIVLATNMAETSITINDVVFVIDCGKAKETSYDALNNTPCLLPSWISK 683 (1009)
Q Consensus 604 ~~~~~~~v~~lHs~l~~~er~~v~~~f~~G~~kVLVATniae~GIdIp~V~~VId~g~~k~~~yd~~~~~~~l~~~~iS~ 683 (1009)
++.|..+||+|.+.+|.+++..|+.+...|++||+++++|+|||++..||++++.+ +.
T Consensus 492 ----~~~v~llhgdkdqa~rn~~ls~fKkk~~~VlvatDvaargldI~~ikTVvnyD~ar------------------dI 549 (731)
T KOG0339|consen 492 ----GFNVSLLHGDKDQAERNEVLSKFKKKRKPVLVATDVAARGLDIPSIKTVVNYDFAR------------------DI 549 (731)
T ss_pred ----cceeeeecCchhhHHHHHHHHHHhhcCCceEEEeeHhhcCCCccccceeecccccc------------------hh
Confidence 78899999999999999999999999999999999999999999999999977666 66
Q ss_pred HhHHhhhcccCCCCC-CcEEEecchhhh
Q 001817 684 AAARQRRGRAGRVQP-GECYHLYPRYVY 710 (1009)
Q Consensus 684 as~~QR~GRAGR~~~-G~c~~Lys~~~~ 710 (1009)
..+.||+||+||.+. |..|.|.|+.+-
T Consensus 550 dththrigrtgRag~kGvayTlvTeKDa 577 (731)
T KOG0339|consen 550 DTHTHRIGRTGRAGEKGVAYTLVTEKDA 577 (731)
T ss_pred HHHHHHhhhcccccccceeeEEechhhH
Confidence 678899999999965 999999998654
No 58
>PRK10689 transcription-repair coupling factor; Provisional
Probab=99.97 E-value=1.1e-29 Score=322.33 Aligned_cols=298 Identities=18% Similarity=0.249 Sum_probs=198.7
Q ss_pred CCCHHHHHHHHHHHHcC------CeEEEEecCCCchhhhHHHHHHHHHHHHhcCCceEEEechhHHHHHHHHHHHHHHHh
Q 001817 297 LPSYKERDALLKAISEN------QVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAER 370 (1009)
Q Consensus 297 LPi~~~q~~il~~l~~~------~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~IvvtqPrR~La~qva~rva~e~ 370 (1009)
-|...|+++|.. +..+ .+++++|+||||||.++..+++..+. .++.++|++||++||.|+++.+.+.+
T Consensus 600 ~~T~~Q~~aI~~-il~d~~~~~~~d~Ll~a~TGsGKT~val~aa~~~~~-----~g~qvlvLvPT~eLA~Q~~~~f~~~~ 673 (1147)
T PRK10689 600 ETTPDQAQAINA-VLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVE-----NHKQVAVLVPTTLLAQQHYDNFRDRF 673 (1147)
T ss_pred CCCHHHHHHHHH-HHHHhhcCCCCCEEEEcCCCcCHHHHHHHHHHHHHH-----cCCeEEEEeCcHHHHHHHHHHHHHhh
Confidence 356666665555 4444 78999999999999888776665432 23567777799999999999998765
Q ss_pred CCcccceeeeeeee----c------cccCCCcEEEEEccHHHHHHHhcCCCCCCccEEEEeCCCcCCCcchHHHHHHHHH
Q 001817 371 GEKLGESVGYKVRL----E------GMKGRDTRLMFCTTGILLRRLLVDRSLRGVTHVIVDEIHERGMNEDFLLIVLKEL 440 (1009)
Q Consensus 371 ~~~~g~~vGy~vr~----e------~~~~~~t~Iiv~T~g~Ll~~L~~~~~l~~is~IIIDEaHeR~~~~d~ll~llk~l 440 (1009)
+. .+..++.-.++ + .......+|+|+||+.+ ..+..++++++|||||+|+.+.. . ...+
T Consensus 674 ~~-~~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL----~~~v~~~~L~lLVIDEahrfG~~--~----~e~l 742 (1147)
T PRK10689 674 AN-WPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLL----QSDVKWKDLGLLIVDEEHRFGVR--H----KERI 742 (1147)
T ss_pred cc-CCceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHH----hCCCCHhhCCEEEEechhhcchh--H----HHHH
Confidence 42 12222211111 1 11124579999999754 22335789999999999974332 2 2223
Q ss_pred cccCCCCcEEEeccCCCHHHHHh---hhCCCCeeccCCc-ccceeeEehhhHHHHhhhccCcccccccchhhhHHHHHHH
Q 001817 441 LPRRPELRLILMSATLNAELFSS---YFGGAPMLHIPGF-TYPVRAYFLENILEMTRYRLNTYNQIDDYGQEKSWKMQKQ 516 (1009)
Q Consensus 441 l~~~~~lkvIlmSATl~~~~~~~---yf~~~pvi~i~g~-~~pv~~~yl~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 516 (1009)
....++.++++||||+.+..+.- .+.+..++..+.. ..++..++.+ +.
T Consensus 743 k~l~~~~qvLl~SATpiprtl~l~~~gl~d~~~I~~~p~~r~~v~~~~~~------------------~~---------- 794 (1147)
T PRK10689 743 KAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVRE------------------YD---------- 794 (1147)
T ss_pred HhcCCCCcEEEEcCCCCHHHHHHHHhhCCCcEEEecCCCCCCCceEEEEe------------------cC----------
Confidence 33456889999999986553321 2222222222211 1222221110 00
Q ss_pred HHHHHhhhhhHHHHHHHHHHHhhhcchhhhhhhccccCCCCCcchhhHHHHHHHHHhhcCCCcEEEEcCCHhHHHHHHHH
Q 001817 517 ALALRKRKSSIASAVEDALEAADFREYSVQTQQSLSCWNPDSIGFNLIEHVLCHIVKKERPGAVLVFMTGWDDINSLKDQ 596 (1009)
Q Consensus 517 ~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~~~~i~~l~~~ 596 (1009)
.......++..+. ..|+++||+++.+.++.+++.
T Consensus 795 -------------------------------------------~~~~k~~il~el~---r~gqv~vf~n~i~~ie~la~~ 828 (1147)
T PRK10689 795 -------------------------------------------SLVVREAILREIL---RGGQVYYLYNDVENIQKAAER 828 (1147)
T ss_pred -------------------------------------------cHHHHHHHHHHHh---cCCeEEEEECCHHHHHHHHHH
Confidence 0000111222222 357899999999999999999
Q ss_pred HHcCCCCCCCCCeEEEEecCCCCHHHHHhhcCCCCCCceEEEEecCccccccCCCCeeEEEeCCCCccccccCCCCCCcc
Q 001817 597 LQAHPLLGDPSRVLLLACHGSMASSEQRLIFDKPEDGVRKIVLATNMAETSITINDVVFVIDCGKAKETSYDALNNTPCL 676 (1009)
Q Consensus 597 L~~~~~~~~~~~~~v~~lHs~l~~~er~~v~~~f~~G~~kVLVATniae~GIdIp~V~~VId~g~~k~~~yd~~~~~~~l 676 (1009)
|.+.. ++..+..+||+|++++|.+++..|++|+.+|||||+++|+|||||++++||...... |
T Consensus 829 L~~~~-----p~~~v~~lHG~m~q~eRe~im~~Fr~Gk~~VLVaTdIierGIDIP~v~~VIi~~ad~---f--------- 891 (1147)
T PRK10689 829 LAELV-----PEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADH---F--------- 891 (1147)
T ss_pred HHHhC-----CCCcEEEEeCCCCHHHHHHHHHHHHhcCCCEEEECchhhcccccccCCEEEEecCCC---C---------
Confidence 98751 245688899999999999999999999999999999999999999999998421110 1
Q ss_pred cccccCHHhHHhhhcccCCCC-CCcEEEecch
Q 001817 677 LPSWISKAAARQRRGRAGRVQ-PGECYHLYPR 707 (1009)
Q Consensus 677 ~~~~iS~as~~QR~GRAGR~~-~G~c~~Lys~ 707 (1009)
+-++|.||+||+||.+ .|.||.+++.
T Consensus 892 -----glaq~~Qr~GRvGR~g~~g~a~ll~~~ 918 (1147)
T PRK10689 892 -----GLAQLHQLRGRVGRSHHQAYAWLLTPH 918 (1147)
T ss_pred -----CHHHHHHHhhccCCCCCceEEEEEeCC
Confidence 3457899999999994 6999998864
No 59
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=99.97 E-value=2.1e-29 Score=309.64 Aligned_cols=298 Identities=18% Similarity=0.242 Sum_probs=198.0
Q ss_pred CCHHHHHHHHHHHHcC------CeEEEEecCCCchhhhHHHHHHHHHHHHhcCCceEEEechhHHHHHHHHHHHHHHHhC
Q 001817 298 PSYKERDALLKAISEN------QVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERG 371 (1009)
Q Consensus 298 Pi~~~q~~il~~l~~~------~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~IvvtqPrR~La~qva~rva~e~~ 371 (1009)
|...| ++.++.+.++ .+++++||||||||.++..+++..+. .++.+++++||++||.|+++.+.+.+.
T Consensus 262 lt~~Q-~~ai~~I~~d~~~~~~~~~Ll~~~TGSGKT~va~~~il~~~~-----~g~q~lilaPT~~LA~Q~~~~l~~l~~ 335 (681)
T PRK10917 262 LTGAQ-KRVVAEILADLASPKPMNRLLQGDVGSGKTVVAALAALAAIE-----AGYQAALMAPTEILAEQHYENLKKLLE 335 (681)
T ss_pred CCHHH-HHHHHHHHHhhhccCCceEEEECCCCCcHHHHHHHHHHHHHH-----cCCeEEEEeccHHHHHHHHHHHHHHHh
Confidence 34454 5555555454 47899999999999999999887653 245677778999999999999987652
Q ss_pred ---Ccccceeeeeee------eccccCCCcEEEEEccHHHHHHHhcCCCCCCccEEEEeCCCcCCCcchHHHHHHHHHcc
Q 001817 372 ---EKLGESVGYKVR------LEGMKGRDTRLMFCTTGILLRRLLVDRSLRGVTHVIVDEIHERGMNEDFLLIVLKELLP 442 (1009)
Q Consensus 372 ---~~~g~~vGy~vr------~e~~~~~~t~Iiv~T~g~Ll~~L~~~~~l~~is~IIIDEaHeR~~~~d~ll~llk~ll~ 442 (1009)
..++..+|-... .......+++|+|+|++.+.. .-.+.++++|||||+|..+. +.... +..
T Consensus 336 ~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~----~v~~~~l~lvVIDE~Hrfg~--~qr~~----l~~ 405 (681)
T PRK10917 336 PLGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQD----DVEFHNLGLVIIDEQHRFGV--EQRLA----LRE 405 (681)
T ss_pred hcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcc----cchhcccceEEEechhhhhH--HHHHH----HHh
Confidence 333333331110 011223468999999987643 22578999999999996432 22222 222
Q ss_pred cCCCCcEEEeccCCCHHHHH-hhhCCCCeecc---CCcccceeeEehhhHHHHhhhccCcccccccchhhhHHHHHHHHH
Q 001817 443 RRPELRLILMSATLNAELFS-SYFGGAPMLHI---PGFTYPVRAYFLENILEMTRYRLNTYNQIDDYGQEKSWKMQKQAL 518 (1009)
Q Consensus 443 ~~~~lkvIlmSATl~~~~~~-~yf~~~pvi~i---~g~~~pv~~~yl~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 518 (1009)
.....++++||||+.+..+. ..++...+..+ +....|+...+...-
T Consensus 406 ~~~~~~iL~~SATp~prtl~~~~~g~~~~s~i~~~p~~r~~i~~~~~~~~------------------------------ 455 (681)
T PRK10917 406 KGENPHVLVMTATPIPRTLAMTAYGDLDVSVIDELPPGRKPITTVVIPDS------------------------------ 455 (681)
T ss_pred cCCCCCEEEEeCCCCHHHHHHHHcCCCceEEEecCCCCCCCcEEEEeCcc------------------------------
Confidence 23457899999998655443 23333222111 111123332221100
Q ss_pred HHHhhhhhHHHHHHHHHHHhhhcchhhhhhhccccCCCCCcchhhHHHHHHHHHhhcCCCcEEEEcCCHh--------HH
Q 001817 519 ALRKRKSSIASAVEDALEAADFREYSVQTQQSLSCWNPDSIGFNLIEHVLCHIVKKERPGAVLVFMTGWD--------DI 590 (1009)
Q Consensus 519 ~~~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~~~--------~i 590 (1009)
..+.+...+...+ ....+++||||..+ .+
T Consensus 456 -----------------------------------------~~~~~~~~i~~~~--~~g~q~~v~~~~ie~s~~l~~~~~ 492 (681)
T PRK10917 456 -----------------------------------------RRDEVYERIREEI--AKGRQAYVVCPLIEESEKLDLQSA 492 (681)
T ss_pred -----------------------------------------cHHHHHHHHHHHH--HcCCcEEEEEcccccccchhHHHH
Confidence 0000001111112 23568999999643 45
Q ss_pred HHHHHHHHcCCCCCCCCCeEEEEecCCCCHHHHHhhcCCCCCCceEEEEecCccccccCCCCeeEEEeCCCCccccccCC
Q 001817 591 NSLKDQLQAHPLLGDPSRVLLLACHGSMASSEQRLIFDKPEDGVRKIVLATNMAETSITINDVVFVIDCGKAKETSYDAL 670 (1009)
Q Consensus 591 ~~l~~~L~~~~~~~~~~~~~v~~lHs~l~~~er~~v~~~f~~G~~kVLVATniae~GIdIp~V~~VId~g~~k~~~yd~~ 670 (1009)
+.+++.|... + .++.+..+||+|+.++|+.+++.|++|+.+|||||+++|+|||+|++++||+.+.++
T Consensus 493 ~~~~~~L~~~--~---~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie~GiDip~v~~VIi~~~~r------- 560 (681)
T PRK10917 493 EETYEELQEA--F---PELRVGLLHGRMKPAEKDAVMAAFKAGEIDILVATTVIEVGVDVPNATVMVIENAER------- 560 (681)
T ss_pred HHHHHHHHHH--C---CCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECcceeeCcccCCCcEEEEeCCCC-------
Confidence 6677777654 1 135699999999999999999999999999999999999999999999999965553
Q ss_pred CCCCcccccccCHHhHHhhhcccCCCC-CCcEEEecc
Q 001817 671 NNTPCLLPSWISKAAARQRRGRAGRVQ-PGECYHLYP 706 (1009)
Q Consensus 671 ~~~~~l~~~~iS~as~~QR~GRAGR~~-~G~c~~Lys 706 (1009)
.+.+++.||+||+||.+ +|.||.+++
T Consensus 561 ----------~gls~lhQ~~GRvGR~g~~g~~ill~~ 587 (681)
T PRK10917 561 ----------FGLAQLHQLRGRVGRGAAQSYCVLLYK 587 (681)
T ss_pred ----------CCHHHHHHHhhcccCCCCceEEEEEEC
Confidence 13467889999999995 699999985
No 60
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=99.97 E-value=3.6e-29 Score=305.62 Aligned_cols=300 Identities=17% Similarity=0.234 Sum_probs=196.9
Q ss_pred CCHHHHHHHHHHHHcC------CeEEEEecCCCchhhhHHHHHHHHHHHHhcCCceEEEechhHHHHHHHHHHHHHHHhC
Q 001817 298 PSYKERDALLKAISEN------QVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERG 371 (1009)
Q Consensus 298 Pi~~~q~~il~~l~~~------~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~IvvtqPrR~La~qva~rva~e~~ 371 (1009)
|...|++++.+ |..+ .+.+++||||||||.++.++++..+. .+..+++++||++||.|+++.+.+.++
T Consensus 236 lt~~Q~~ai~~-I~~~~~~~~~~~~Ll~g~TGSGKT~va~l~il~~~~-----~g~qvlilaPT~~LA~Q~~~~~~~l~~ 309 (630)
T TIGR00643 236 LTRAQKRVVKE-ILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAAIE-----AGYQVALMAPTEILAEQHYNSLRNLLA 309 (630)
T ss_pred CCHHHHHHHHH-HHHHhccCCCccEEEECCCCCcHHHHHHHHHHHHHH-----cCCcEEEECCHHHHHHHHHHHHHHHhc
Confidence 45555555554 4433 35899999999999999888887653 234677778999999999999987663
Q ss_pred ---Ccccceeeeee------eeccccCCCcEEEEEccHHHHHHHhcCCCCCCccEEEEeCCCcCCCcchHHHHHHHHHcc
Q 001817 372 ---EKLGESVGYKV------RLEGMKGRDTRLMFCTTGILLRRLLVDRSLRGVTHVIVDEIHERGMNEDFLLIVLKELLP 442 (1009)
Q Consensus 372 ---~~~g~~vGy~v------r~e~~~~~~t~Iiv~T~g~Ll~~L~~~~~l~~is~IIIDEaHeR~~~~d~ll~llk~ll~ 442 (1009)
..+...+|-.. ..+.....+.+|+|+|++.+.+ ...+.++++|||||+|..+.. ....++.. ..
T Consensus 310 ~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~----~~~~~~l~lvVIDEaH~fg~~--qr~~l~~~-~~ 382 (630)
T TIGR00643 310 PLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQE----KVEFKRLALVIIDEQHRFGVE--QRKKLREK-GQ 382 (630)
T ss_pred ccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhc----cccccccceEEEechhhccHH--HHHHHHHh-cc
Confidence 33333333110 0111223467999999997653 235789999999999974432 22222221 11
Q ss_pred cCCCCcEEEeccCCCHHHHH-hhhCCCCee---ccCCcccceeeEehhhHHHHhhhccCcccccccchhhhHHHHHHHHH
Q 001817 443 RRPELRLILMSATLNAELFS-SYFGGAPML---HIPGFTYPVRAYFLENILEMTRYRLNTYNQIDDYGQEKSWKMQKQAL 518 (1009)
Q Consensus 443 ~~~~lkvIlmSATl~~~~~~-~yf~~~pvi---~i~g~~~pv~~~yl~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 518 (1009)
...+.++++||||+.+..+. ..++...+. ..+....|+...+...-
T Consensus 383 ~~~~~~~l~~SATp~prtl~l~~~~~l~~~~i~~~p~~r~~i~~~~~~~~------------------------------ 432 (630)
T TIGR00643 383 GGFTPHVLVMSATPIPRTLALTVYGDLDTSIIDELPPGRKPITTVLIKHD------------------------------ 432 (630)
T ss_pred cCCCCCEEEEeCCCCcHHHHHHhcCCcceeeeccCCCCCCceEEEEeCcc------------------------------
Confidence 11257899999998554433 222221111 11211223333221100
Q ss_pred HHHhhhhhHHHHHHHHHHHhhhcchhhhhhhccccCCCCCcchhhHHHHHHHHHhh-cCCCcEEEEcCCH--------hH
Q 001817 519 ALRKRKSSIASAVEDALEAADFREYSVQTQQSLSCWNPDSIGFNLIEHVLCHIVKK-ERPGAVLVFMTGW--------DD 589 (1009)
Q Consensus 519 ~~~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~-~~~g~iLVFl~~~--------~~ 589 (1009)
....++..+.+. ....+++|||+.. ..
T Consensus 433 --------------------------------------------~~~~~~~~i~~~l~~g~q~~v~~~~i~~s~~~~~~~ 468 (630)
T TIGR00643 433 --------------------------------------------EKDIVYEFIEEEIAKGRQAYVVYPLIEESEKLDLKA 468 (630)
T ss_pred --------------------------------------------hHHHHHHHHHHHHHhCCcEEEEEccccccccchHHH
Confidence 000011111111 1346899999876 34
Q ss_pred HHHHHHHHHcCCCCCCCCCeEEEEecCCCCHHHHHhhcCCCCCCceEEEEecCccccccCCCCeeEEEeCCCCccccccC
Q 001817 590 INSLKDQLQAHPLLGDPSRVLLLACHGSMASSEQRLIFDKPEDGVRKIVLATNMAETSITINDVVFVIDCGKAKETSYDA 669 (1009)
Q Consensus 590 i~~l~~~L~~~~~~~~~~~~~v~~lHs~l~~~er~~v~~~f~~G~~kVLVATniae~GIdIp~V~~VId~g~~k~~~yd~ 669 (1009)
++.+++.|... + .++.+..+||+|++++|..+++.|++|+.+|||||+++|+|||+|++++||..+.++
T Consensus 469 a~~~~~~L~~~--~---~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie~GvDiP~v~~VIi~~~~r------ 537 (630)
T TIGR00643 469 AEALYERLKKA--F---PKYNVGLLHGRMKSDEKEAVMEEFREGEVDILVATTVIEVGVDVPNATVMVIEDAER------ 537 (630)
T ss_pred HHHHHHHHHhh--C---CCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECceeecCcccCCCcEEEEeCCCc------
Confidence 56677777653 1 256799999999999999999999999999999999999999999999999855543
Q ss_pred CCCCCcccccccCHHhHHhhhcccCCCC-CCcEEEecc
Q 001817 670 LNNTPCLLPSWISKAAARQRRGRAGRVQ-PGECYHLYP 706 (1009)
Q Consensus 670 ~~~~~~l~~~~iS~as~~QR~GRAGR~~-~G~c~~Lys 706 (1009)
.+.+++.||+|||||.+ +|.||.++.
T Consensus 538 -----------~gls~lhQ~~GRvGR~g~~g~~il~~~ 564 (630)
T TIGR00643 538 -----------FGLSQLHQLRGRVGRGDHQSYCLLVYK 564 (630)
T ss_pred -----------CCHHHHHHHhhhcccCCCCcEEEEEEC
Confidence 14568899999999985 799999983
No 61
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=99.97 E-value=6e-29 Score=292.43 Aligned_cols=386 Identities=20% Similarity=0.244 Sum_probs=227.7
Q ss_pred cCCCCHHHHHHHHHHHHcCCeEEEEecCCCchhhhHHHHHHHHHHHHhcCCceEEEechhHHHHHHHHHHHHHHHhCCcc
Q 001817 295 RSLPSYKERDALLKAISENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERGEKL 374 (1009)
Q Consensus 295 ~~LPi~~~q~~il~~l~~~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~IvvtqPrR~La~qva~rva~e~~~~~ 374 (1009)
..+|...||.+|...-. ++++||++|||+|||.++...+++++-. -+.++||+++|++-|+.|....+. ..+...
T Consensus 59 ~~~~lR~YQ~eivq~AL-gkNtii~lPTG~GKTfIAa~Vm~nh~rw---~p~~KiVF~aP~~pLv~QQ~a~~~-~~~~~~ 133 (746)
T KOG0354|consen 59 TNLELRNYQEELVQPAL-GKNTIIALPTGSGKTFIAAVIMKNHFEW---RPKGKVVFLAPTRPLVNQQIACFS-IYLIPY 133 (746)
T ss_pred CcccccHHHHHHhHHhh-cCCeEEEeecCCCccchHHHHHHHHHhc---CCcceEEEeeCCchHHHHHHHHHh-hccCcc
Confidence 57888999999998877 9999999999999999998888877643 345799999999999999885443 333221
Q ss_pred cceeeeeee-----eccccCCCcEEEEEccHHHHHHHhcCC--CCCCccEEEEeCCCcCCCcchHHHHHHHHHcccCC-C
Q 001817 375 GESVGYKVR-----LEGMKGRDTRLMFCTTGILLRRLLVDR--SLRGVTHVIVDEIHERGMNEDFLLIVLKELLPRRP-E 446 (1009)
Q Consensus 375 g~~vGy~vr-----~e~~~~~~t~Iiv~T~g~Ll~~L~~~~--~l~~is~IIIDEaHeR~~~~d~ll~llk~ll~~~~-~ 446 (1009)
...|.... .-.......+|+|+||++|.+.|.... .|+.++++|||||| |....-..-.+++.++.... .
T Consensus 134 -~~T~~l~~~~~~~~r~~i~~s~~vff~TpQil~ndL~~~~~~~ls~fs~iv~DE~H-ra~kn~~Y~~Vmr~~l~~k~~~ 211 (746)
T KOG0354|consen 134 -SVTGQLGDTVPRSNRGEIVASKRVFFRTPQILENDLKSGLHDELSDFSLIVFDECH-RTSKNHPYNNIMREYLDLKNQG 211 (746)
T ss_pred -cceeeccCccCCCchhhhhcccceEEeChHhhhhhcccccccccceEEEEEEcccc-cccccccHHHHHHHHHHhhhcc
Confidence 11110000 000112467999999999999887654 47889999999999 44443344444545544333 3
Q ss_pred CcEEEeccCC--CHHHHHhhhCCCCe-ecc--------------CCcccceeeEeh-hhHHHHhhhccCcc---------
Q 001817 447 LRLILMSATL--NAELFSSYFGGAPM-LHI--------------PGFTYPVRAYFL-ENILEMTRYRLNTY--------- 499 (1009)
Q Consensus 447 lkvIlmSATl--~~~~~~~yf~~~pv-i~i--------------~g~~~pv~~~yl-~~i~~~~~~~~~~~--------- 499 (1009)
.|+|++|||+ +.+...++..+--+ +.+ +-...|++...- .++.+..+..+.++
T Consensus 212 ~qILgLTASpG~~~~~v~~~I~~L~asldvr~~ssi~~~y~~lr~~~~i~v~~~~~~~~~~~~f~~~i~p~l~~l~~~~l 291 (746)
T KOG0354|consen 212 NQILGLTASPGSKLEQVQNVIDNLCASLDVRTESSIKSNYEELREHVQIPVDLSLCERDIEDPFGMIIEPLLQQLQEEGL 291 (746)
T ss_pred ccEEEEecCCCccHHHHHHHHHhhheecccchhhhhhhhHHHHhccCcccCcHHHhhhhhhhhHHHHHHHHHHHHHhcCc
Confidence 3999999999 55555555542100 110 011234431100 01111011000000
Q ss_pred cccc----cchh---------------hhHHHHHHHHHHHHh--hhhhHHHHHH--HHH-------HHhhhcchhh----
Q 001817 500 NQID----DYGQ---------------EKSWKMQKQALALRK--RKSSIASAVE--DAL-------EAADFREYSV---- 545 (1009)
Q Consensus 500 ~~i~----~~~~---------------~~~~~~~~~~~~~~~--~~~~~~~~v~--~~l-------~~~~~~~~~~---- 545 (1009)
..+. .|.. ...|... ...... ....+...+. .++ .......+..
T Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~f~--~~~~~~~~~~ll~~~gir~~~~l~~~~~f~~e~~~~k~~~~~~e 369 (746)
T KOG0354|consen 292 IEISDKSTSYEQWVVQAEKAAAPNGPENQRNCFY--ALHLRKYNLALLISDGIRFVDALDYLEDFYEEVALKKYLKLELE 369 (746)
T ss_pred cccccccccccchhhhhhhhhccCCCccchhhHH--HHHHHHHHHHHHhhcchhhHHHHhhhhhhccccchhHHHHHHhc
Confidence 0000 0100 0000000 000000 0000000000 000 0000000000
Q ss_pred --------hhhhccccC--CCC--CcchhhHHHHHHHHHhhcCCCcEEEEcCCHhHHHHHHHHHHcCCCCCCCCCeEEEE
Q 001817 546 --------QTQQSLSCW--NPD--SIGFNLIEHVLCHIVKKERPGAVLVFMTGWDDINSLKDQLQAHPLLGDPSRVLLLA 613 (1009)
Q Consensus 546 --------~~~~~l~~~--~~~--~i~~~li~~ll~~i~~~~~~g~iLVFl~~~~~i~~l~~~L~~~~~~~~~~~~~v~~ 613 (1009)
.....+..+ ++. .-.++.....+.......+..++|||+.+++.+..+...|......+-.+.+.++.
T Consensus 370 ~~~~~~~~~~m~~~~~l~~~~~~~npkle~l~~~l~e~f~~~~dsR~IIFve~R~sa~~l~~~l~~~~~~~ir~~~fiGq 449 (746)
T KOG0354|consen 370 ARLIRNFTENMNELEHLSLDPPKENPKLEKLVEILVEQFEQNPDSRTIIFVETRESALALKKWLLQLHELGIKAEIFIGQ 449 (746)
T ss_pred chhhHHHHHHHHhhhhhhcCCCccChhHHHHHHHHHHHhhcCCCccEEEEEehHHHHHHHHHHHHhhhhcccccceeeec
Confidence 000011111 111 22233444445555555667899999999999999999998532222233444444
Q ss_pred ec----CCCCHHHHHhhcCCCCCCceEEEEecCccccccCCCCeeEEEeCCCCccccccCCCCCCcccccccCHHhHHhh
Q 001817 614 CH----GSMASSEQRLIFDKPEDGVRKIVLATNMAETSITINDVVFVIDCGKAKETSYDALNNTPCLLPSWISKAAARQR 689 (1009)
Q Consensus 614 lH----s~l~~~er~~v~~~f~~G~~kVLVATniae~GIdIp~V~~VId~g~~k~~~yd~~~~~~~l~~~~iS~as~~QR 689 (1009)
-+ .+|++.+|+++++.|++|..+|||||+|+|+|+||+.|+.||- ||..+ |.-..+||
T Consensus 450 ~~s~~~~gmtqk~Q~evl~~Fr~G~~NvLVATSV~EEGLDI~ec~lVIc--------Yd~~s----------npIrmIQr 511 (746)
T KOG0354|consen 450 GKSTQSTGMTQKEQKEVLDKFRDGEINVLVATSVAEEGLDIGECNLVIC--------YDYSS----------NPIRMVQR 511 (746)
T ss_pred cccccccccCHHHHHHHHHHHhCCCccEEEEecchhccCCcccccEEEE--------ecCCc----------cHHHHHHH
Confidence 33 3899999999999999999999999999999999999999998 44443 45577899
Q ss_pred hcccCCCCCCcEEEecchh
Q 001817 690 RGRAGRVQPGECYHLYPRY 708 (1009)
Q Consensus 690 ~GRAGR~~~G~c~~Lys~~ 708 (1009)
+|| ||...|+|+.|++..
T Consensus 512 rGR-gRa~ns~~vll~t~~ 529 (746)
T KOG0354|consen 512 RGR-GRARNSKCVLLTTGS 529 (746)
T ss_pred hcc-ccccCCeEEEEEcch
Confidence 999 999999999999843
No 62
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.97 E-value=7e-30 Score=281.77 Aligned_cols=321 Identities=17% Similarity=0.233 Sum_probs=210.0
Q ss_pred CHHHHHHHHHHHH---------cCCeEEEEecCCCchhhhHHHHHHHHHHHHhcCCceEEEechhHHHHHHHHHHHHHHH
Q 001817 299 SYKERDALLKAIS---------ENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAE 369 (1009)
Q Consensus 299 i~~~q~~il~~l~---------~~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~IvvtqPrR~La~qva~rva~e 369 (1009)
.++.|.+++.++. ..+++.|.||||||||+++.++|++.+..+ .-...+.+|++|+|+||.|++..+...
T Consensus 160 ~FPVQ~aVlp~ll~~~~~p~~~r~rDIcV~ApTGSGKTLaY~iPIVQ~L~~R-~v~~LRavVivPtr~L~~QV~~~f~~~ 238 (620)
T KOG0350|consen 160 LFPVQYAVLPSLLEEIRSPPPSRPRDICVNAPTGSGKTLAYVIPIVQLLSSR-PVKRLRAVVIVPTRELALQVYDTFKRL 238 (620)
T ss_pred ccchHHHHHHHHHHhhcCCCCCCCCceEEecCCCCCceeeehhHHHHHHccC-CccceEEEEEeeHHHHHHHHHHHHHHh
Confidence 3444666777662 257899999999999999999999877542 223356677779999999999988655
Q ss_pred hCCcccceeeeeeeecc-------ccCC----CcEEEEEccHHHHHHHhcCC--CCCCccEEEEeCCCcCCCcc---hHH
Q 001817 370 RGEKLGESVGYKVRLEG-------MKGR----DTRLMFCTTGILLRRLLVDR--SLRGVTHVIVDEIHERGMNE---DFL 433 (1009)
Q Consensus 370 ~~~~~g~~vGy~vr~e~-------~~~~----~t~Iiv~T~g~Ll~~L~~~~--~l~~is~IIIDEaHeR~~~~---d~l 433 (1009)
. ...|..|+......+ ..+. ..+|+|+|||+|.+.|.+.+ .|++++++|||||+. -++. +++
T Consensus 239 ~-~~tgL~V~~~sgq~sl~~E~~qL~~~~~~~~~DIlVaTPGRLVDHl~~~k~f~Lk~LrfLVIDEADR-ll~qsfQ~Wl 316 (620)
T KOG0350|consen 239 N-SGTGLAVCSLSGQNSLEDEARQLASDPPECRIDILVATPGRLVDHLNNTKSFDLKHLRFLVIDEADR-LLDQSFQEWL 316 (620)
T ss_pred c-cCCceEEEecccccchHHHHHHHhcCCCccccceEEcCchHHHHhccCCCCcchhhceEEEechHHH-HHHHHHHHHH
Confidence 4 233444442221111 1112 34899999999999998766 799999999999993 2221 111
Q ss_pred HHHHHHH-------------------------------cccCCCCcEEEeccCC--CHHHHHhhhCCCC-eeccCCcccc
Q 001817 434 LIVLKEL-------------------------------LPRRPELRLILMSATL--NAELFSSYFGGAP-MLHIPGFTYP 479 (1009)
Q Consensus 434 l~llk~l-------------------------------l~~~~~lkvIlmSATl--~~~~~~~yf~~~p-vi~i~g~~~p 479 (1009)
..++..+ ....+.+.-+.+|||+ ++..+.++=-+.| .+++.+.
T Consensus 317 ~~v~~~~~~~k~~~~~~nii~~~~~~~pt~~~e~~t~~~~~~~~l~kL~~satLsqdP~Kl~~l~l~~Prl~~v~~~--- 393 (620)
T KOG0350|consen 317 DTVMSLCKTMKRVACLDNIIRQRQAPQPTVLSELLTKLGKLYPPLWKLVFSATLSQDPSKLKDLTLHIPRLFHVSKP--- 393 (620)
T ss_pred HHHHHHhCCchhhcChhhhhhhcccCCchhhHHHHhhcCCcCchhHhhhcchhhhcChHHHhhhhcCCCceEEeecc---
Confidence 1111110 1112233456667766 5555554432222 2222210
Q ss_pred eeeEehhhHHHHhhhccCcccccccchhhhHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhcchhhhhhhccccCCCCCc
Q 001817 480 VRAYFLENILEMTRYRLNTYNQIDDYGQEKSWKMQKQALALRKRKSSIASAVEDALEAADFREYSVQTQQSLSCWNPDSI 559 (1009)
Q Consensus 480 v~~~yl~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~l~~~~~~~i 559 (1009)
.-..| .+. ..+.+.... .
T Consensus 394 ~~~ry----------slp-------------------------------~~l~~~~vv---------------------~ 411 (620)
T KOG0350|consen 394 LIGRY----------SLP-------------------------------SSLSHRLVV---------------------T 411 (620)
T ss_pred cceee----------ecC-------------------------------hhhhhceee---------------------c
Confidence 00000 000 000000000 0
Q ss_pred chhhHHHHHHHHHhhcCCCcEEEEcCCHhHHHHHHHHHH-cCCCCCCCCCeEEEEecCCCCHHHHHhhcCCCCCCceEEE
Q 001817 560 GFNLIEHVLCHIVKKERPGAVLVFMTGWDDINSLKDQLQ-AHPLLGDPSRVLLLACHGSMASSEQRLIFDKPEDGVRKIV 638 (1009)
Q Consensus 560 ~~~li~~ll~~i~~~~~~g~iLVFl~~~~~i~~l~~~L~-~~~~~~~~~~~~v~~lHs~l~~~er~~v~~~f~~G~~kVL 638 (1009)
........+.+++......++|+|+++.+.+.+++..|. ... ...+.+-.+.|+++.+.|.+.++.|..|.++||
T Consensus 412 ~~~~kpl~~~~lI~~~k~~r~lcf~~S~~sa~Rl~~~L~v~~~----~~~~~~s~~t~~l~~k~r~k~l~~f~~g~i~vL 487 (620)
T KOG0350|consen 412 EPKFKPLAVYALITSNKLNRTLCFVNSVSSANRLAHVLKVEFC----SDNFKVSEFTGQLNGKRRYKMLEKFAKGDINVL 487 (620)
T ss_pred ccccchHhHHHHHHHhhcceEEEEecchHHHHHHHHHHHHHhc----cccchhhhhhhhhhHHHHHHHHHHHhcCCceEE
Confidence 000111234455555566799999999999999999997 321 124556678999999999999999999999999
Q ss_pred EecCccccccCCCCeeEEEeCCCCccccccCCCCCCcccccccCHHhHHhhhcccCCCC-CCcEEEecchhh
Q 001817 639 LATNMAETSITINDVVFVIDCGKAKETSYDALNNTPCLLPSWISKAAARQRRGRAGRVQ-PGECYHLYPRYV 709 (1009)
Q Consensus 639 VATniae~GIdIp~V~~VId~g~~k~~~yd~~~~~~~l~~~~iS~as~~QR~GRAGR~~-~G~c~~Lys~~~ 709 (1009)
|||+++++|||+.+|+.|||++.|. |...|+||+||+||.| .|.||.|.++..
T Consensus 488 IcSD~laRGiDv~~v~~VINYd~P~------------------~~ktyVHR~GRTARAgq~G~a~tll~~~~ 541 (620)
T KOG0350|consen 488 ICSDALARGIDVNDVDNVINYDPPA------------------SDKTYVHRAGRTARAGQDGYAITLLDKHE 541 (620)
T ss_pred EehhhhhcCCcccccceEeecCCCc------------------hhhHHHHhhcccccccCCceEEEeecccc
Confidence 9999999999999999999965554 6668889999999996 599999987643
No 63
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=99.97 E-value=3.5e-29 Score=287.37 Aligned_cols=300 Identities=20% Similarity=0.251 Sum_probs=192.6
Q ss_pred eEEEEecCCCchhhhHHHHHHHHHHHHhcCCceEEEechhHHHHHHHHHHHHHHHhCCcccceeeeee------e-----
Q 001817 315 VVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERGEKLGESVGYKV------R----- 383 (1009)
Q Consensus 315 ~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~IvvtqPrR~La~qva~rva~e~~~~~g~~vGy~v------r----- 383 (1009)
+++|+||||||||+++.+++++.+.. +...++++++|+++|+.|+++++...++..++...|... .
T Consensus 1 ~vvi~apTGsGKT~~~~~~~l~~~~~---~~~~~ii~v~P~~~L~~q~~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~ 77 (358)
T TIGR01587 1 LLVIEAPTGYGKTEAALLWALHSIKS---QKADRVIIALPTRATINAMYRRAKELFGSNLGLLHSSSSFKRIKEMGDSEE 77 (358)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHhh---CCCCeEEEEeehHHHHHHHHHHHHHHhCcccEEeeccHHHHHHhccCCchh
Confidence 47899999999999999999986532 344578888999999999999999988765553322110 0
Q ss_pred eccc---------cCCCcEEEEEccHHHHHHHhcCC-----CC--CCccEEEEeCCCcCCCc-chHHHHHHHHHcccCCC
Q 001817 384 LEGM---------KGRDTRLMFCTTGILLRRLLVDR-----SL--RGVTHVIVDEIHERGMN-EDFLLIVLKELLPRRPE 446 (1009)
Q Consensus 384 ~e~~---------~~~~t~Iiv~T~g~Ll~~L~~~~-----~l--~~is~IIIDEaHeR~~~-~d~ll~llk~ll~~~~~ 446 (1009)
.+.. .....+|+++||+.++..+.... .+ -..++|||||+|...-. .+++..+++.+. ..+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~l~~~l~~l~--~~~ 155 (358)
T TIGR01587 78 FEHLFPLYIHSNDKLFLDPITVCTIDQVLKSVFGEFGHYEFTLASIANSLLIFDEVHFYDEYTLALILAVLEVLK--DND 155 (358)
T ss_pred HHHHHHHHhhchhhhhhCCeeeCCHHHHHHHHhcccchHHHHHHHhcCCEEEEeCCCCCCHHHHHHHHHHHHHHH--HcC
Confidence 0000 01235799999999988776521 11 12379999999964321 234444444443 356
Q ss_pred CcEEEeccCCCHHHHHhhhCCCCeeccCCcccceeeEehhhHHHHhhhccCcccccccchhhhHHHHHHHHHHHHhhhhh
Q 001817 447 LRLILMSATLNAELFSSYFGGAPMLHIPGFTYPVRAYFLENILEMTRYRLNTYNQIDDYGQEKSWKMQKQALALRKRKSS 526 (1009)
Q Consensus 447 lkvIlmSATl~~~~~~~yf~~~pvi~i~g~~~pv~~~yl~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 526 (1009)
.|+|+||||++ +.+.+|+........+. .++.... .. ...+... ..
T Consensus 156 ~~~i~~SATlp-~~l~~~~~~~~~~~~~~-~~~~~~~--~~---~~~~~~~---~~------------------------ 201 (358)
T TIGR01587 156 VPILLMSATLP-KFLKEYAEKIGYVEFNE-PLDLKEE--RR---FERHRFI---KI------------------------ 201 (358)
T ss_pred CCEEEEecCch-HHHHHHHhcCCCccccc-CCCCccc--cc---cccccce---ee------------------------
Confidence 88999999997 45666664321110000 0000000 00 0000000 00
Q ss_pred HHHHHHHHHHHhhhcchhhhhhhccccCCCCCcchhhHHHHHHHHHhhcCCCcEEEEcCCHhHHHHHHHHHHcCCCCCCC
Q 001817 527 IASAVEDALEAADFREYSVQTQQSLSCWNPDSIGFNLIEHVLCHIVKKERPGAVLVFMTGWDDINSLKDQLQAHPLLGDP 606 (1009)
Q Consensus 527 ~~~~v~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~~~~i~~l~~~L~~~~~~~~~ 606 (1009)
..........+..++.. ...++++||||+++++++.+++.|.+...
T Consensus 202 ---------------------------~~~~~~~~~~l~~l~~~---~~~~~~~lVf~~t~~~~~~~~~~L~~~~~---- 247 (358)
T TIGR01587 202 ---------------------------ESDKVGEISSLERLLEF---IKKGGKIAIIVNTVDRAQEFYQQLKENAP---- 247 (358)
T ss_pred ---------------------------ccccccCHHHHHHHHHH---hhCCCeEEEEECCHHHHHHHHHHHHhhcC----
Confidence 00000001111122211 12457999999999999999999987521
Q ss_pred CCeEEEEecCCCCHHHHHh----hcCCCCCCceEEEEecCccccccCCCCeeEEEeCCCCccccccCCCCCCcccccccC
Q 001817 607 SRVLLLACHGSMASSEQRL----IFDKPEDGVRKIVLATNMAETSITINDVVFVIDCGKAKETSYDALNNTPCLLPSWIS 682 (1009)
Q Consensus 607 ~~~~v~~lHs~l~~~er~~----v~~~f~~G~~kVLVATniae~GIdIp~V~~VId~g~~k~~~yd~~~~~~~l~~~~iS 682 (1009)
...+..+||++++.+|.. +++.|++|..+|||||+++|+||||| +++||+. +.+
T Consensus 248 -~~~~~~~h~~~~~~~r~~~~~~~~~~f~~~~~~ilvaT~~~~~GiDi~-~~~vi~~--------------------~~~ 305 (358)
T TIGR01587 248 -EEEIMLLHSRFTEKDRAKKEAELLEEMKKNEKFVIVATQVIEASLDIS-ADVMITE--------------------LAP 305 (358)
T ss_pred -CCeEEEEECCCCHHHHHHHHHHHHHHhcCCCCeEEEECcchhceeccC-CCEEEEc--------------------CCC
Confidence 235899999999999976 48899999999999999999999996 6777752 225
Q ss_pred HHhHHhhhcccCCCCC-----CcEEEecchhh
Q 001817 683 KAAARQRRGRAGRVQP-----GECYHLYPRYV 709 (1009)
Q Consensus 683 ~as~~QR~GRAGR~~~-----G~c~~Lys~~~ 709 (1009)
..+|.||+||+||.+. |.+|.++....
T Consensus 306 ~~~~iqr~GR~gR~g~~~~~~~~~~v~~~~~~ 337 (358)
T TIGR01587 306 IDSLIQRLGRLHRYGRKNGENFEVYIITIAPE 337 (358)
T ss_pred HHHHHHHhccccCCCCCCCCCCeEEEEeecCC
Confidence 5789999999999853 36777765543
No 64
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=99.96 E-value=8.6e-29 Score=299.69 Aligned_cols=346 Identities=17% Similarity=0.180 Sum_probs=198.3
Q ss_pred CHHHHHHHHHHHHcCC-eEEEEecCCCchhhhHHHHHHHHHHHHhcCCceEEEechhHHHHHHHHHHHHHHHhCCc----
Q 001817 299 SYKERDALLKAISENQ-VVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERGEK---- 373 (1009)
Q Consensus 299 i~~~q~~il~~l~~~~-~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~IvvtqPrR~La~qva~rva~e~~~~---- 373 (1009)
.+.+|.++++.+..|+ ++++++|||||||.++..+++-. ........++++++|||+||.|+++.+.+.....
T Consensus 16 PtpiQ~~~i~~il~G~~~v~~~apTGSGKTaa~aafll~~--~~~~~~~~rLv~~vPtReLa~Qi~~~~~~~~k~l~~~~ 93 (844)
T TIGR02621 16 PFPWQLSLAERFVAGQPPESCSTPTGLGKTSIIAAWLLAV--EIGAKVPRRLVYVVNRRTVVDQVTEEAEKIGERLPDVP 93 (844)
T ss_pred CCHHHHHHHHHHHcCCCcceEecCCCCcccHHHHHhhccc--cccccccceEEEeCchHHHHHHHHHHHHHHHHHhcccc
Confidence 4444555556666776 67888999999998766555532 1112223356667799999999998876643211
Q ss_pred ----------------------ccceee-eeeeec-cccCCCcEEEEEccHHHHHHHhcC-------------CCCCCcc
Q 001817 374 ----------------------LGESVG-YKVRLE-GMKGRDTRLMFCTTGILLRRLLVD-------------RSLRGVT 416 (1009)
Q Consensus 374 ----------------------~g~~vG-y~vr~e-~~~~~~t~Iiv~T~g~Ll~~L~~~-------------~~l~~is 416 (1009)
+...+| .....+ ......++|+|+|+..+.+..... ..+++++
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~~q~~~l~~~p~IIVgT~D~i~sr~L~~gYg~~~~~~pi~ag~L~~v~ 173 (844)
T TIGR02621 94 EVEAALWALCSTRPEKKDRPLAISTLRGQFADNDEWMLDPHRPAVIVGTVDMIGSRLLFSGYGCGFKSRPLHAGFLGQDA 173 (844)
T ss_pred hhhhhhhhhhccccccccCCeEEEEEECCCChHHHHHhcCCCCcEEEECHHHHcCCccccccccccccccchhhhhccce
Confidence 011111 000000 112246789999976665444321 0368899
Q ss_pred EEEEeCCCcCCCcchHHHHHHHHHcccCC---CCcEEEeccCCCHH--HHHhhhCCCCe-eccCCcccceeeEehhhHHH
Q 001817 417 HVIVDEIHERGMNEDFLLIVLKELLPRRP---ELRLILMSATLNAE--LFSSYFGGAPM-LHIPGFTYPVRAYFLENILE 490 (1009)
Q Consensus 417 ~IIIDEaHeR~~~~d~ll~llk~ll~~~~---~lkvIlmSATl~~~--~~~~yf~~~pv-i~i~g~~~pv~~~yl~~i~~ 490 (1009)
+||+||||......+.+..+++.+. ..+ ++|+++||||++.+ .+...+...+. +.+.......
T Consensus 174 ~LVLDEADLd~gF~~~l~~Il~~l~-rp~~~rprQtLLFSAT~p~ei~~l~~~~~~~p~~i~V~~~~l~a---------- 242 (844)
T TIGR02621 174 LIVHDEAHLEPAFQELLKQIMNEQQ-RPPDFLPLRVVELTATSRTDGPDRTTLLSAEDYKHPVLKKRLAA---------- 242 (844)
T ss_pred EEEEehhhhccccHHHHHHHHHhcc-cCcccccceEEEEecCCCccHHHHHHHHccCCceeecccccccc----------
Confidence 9999999943333344444444321 122 36999999999643 23333322111 1111000000
Q ss_pred HhhhccCcccccccchhhhHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhcchhhhhhhccccCCCCCcchhhHHHHHHH
Q 001817 491 MTRYRLNTYNQIDDYGQEKSWKMQKQALALRKRKSSIASAVEDALEAADFREYSVQTQQSLSCWNPDSIGFNLIEHVLCH 570 (1009)
Q Consensus 491 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~ 570 (1009)
..+..+.... +......+...+..
T Consensus 243 ---------~ki~q~v~v~-----------------------------------------------~e~Kl~~lv~~L~~ 266 (844)
T TIGR02621 243 ---------KKIVKLVPPS-----------------------------------------------DEKFLSTMVKELNL 266 (844)
T ss_pred ---------cceEEEEecC-----------------------------------------------hHHHHHHHHHHHHH
Confidence 0000000000 00000000111222
Q ss_pred HHhhcCCCcEEEEcCCHhHHHHHHHHHHcCCCCCCCCCeEEEEecCCCCHHHHH-----hhcCCCCC----Cc-------
Q 001817 571 IVKKERPGAVLVFMTGWDDINSLKDQLQAHPLLGDPSRVLLLACHGSMASSEQR-----LIFDKPED----GV------- 634 (1009)
Q Consensus 571 i~~~~~~g~iLVFl~~~~~i~~l~~~L~~~~~~~~~~~~~v~~lHs~l~~~er~-----~v~~~f~~----G~------- 634 (1009)
+.. ...+++||||+|++.++.+++.|... ++ ..+||+|++.+|. .+++.|++ |.
T Consensus 267 ll~-e~g~~vLVF~NTv~~Aq~L~~~L~~~-------g~--~lLHG~m~q~dR~~~~~~~il~~Fk~~~~~g~~~~~~~g 336 (844)
T TIGR02621 267 LMK-DSGGAILVFCRTVKHVRKVFAKLPKE-------KF--ELLTGTLRGAERDDLVKKEIFNRFLPQMLSGSRARPQQG 336 (844)
T ss_pred HHh-hCCCcEEEEECCHHHHHHHHHHHHhc-------CC--eEeeCCCCHHHHhhHHHHHHHHHHhcccccccccccccc
Confidence 222 34678999999999999999999875 33 7899999999999 77888876 44
Q ss_pred eEEEEecCccccccCCCCeeEEEeCCCCccccccCCCCCCcccccccCHHhHHhhhcccCCCCC-CcE-EEecchhhhh-
Q 001817 635 RKIVLATNMAETSITINDVVFVIDCGKAKETSYDALNNTPCLLPSWISKAAARQRRGRAGRVQP-GEC-YHLYPRYVYD- 711 (1009)
Q Consensus 635 ~kVLVATniae~GIdIp~V~~VId~g~~k~~~yd~~~~~~~l~~~~iS~as~~QR~GRAGR~~~-G~c-~~Lys~~~~~- 711 (1009)
.+|||||+++|+||||+. ++||+.. .+..+|+||+||+||.+. |.+ +.+++.+.-.
T Consensus 337 ~~ILVATdVaerGLDId~-d~VI~d~--------------------aP~esyIQRiGRtgR~G~~~~~~i~vv~~~~~~~ 395 (844)
T TIGR02621 337 TVYLVCTSAGEVGVNISA-DHLVCDL--------------------APFESMQQRFGRVNRFGELQACQIAVVHLDLGKD 395 (844)
T ss_pred ceEEeccchhhhcccCCc-ceEEECC--------------------CCHHHHHHHhcccCCCCCCCCceEEEEeeccCCC
Confidence 689999999999999987 6777521 134789999999999965 322 4443321100
Q ss_pred hhccCCCccccccCchhhhhHhhhcCcCCHHHH
Q 001817 712 AFADYQLPELLRTPLQSLCLQIKSLQLGSISEF 744 (1009)
Q Consensus 712 ~l~~~~~PEi~r~~L~~~~L~lk~l~~~~~~~f 744 (1009)
.-...--||++...+..+.+..+..+..+...|
T Consensus 396 ~~~~vY~~~~l~~t~~~L~~~~~~~~~~~~~al 428 (844)
T TIGR02621 396 QDFDVYGKKIDKSTWSTLKKLQQLKGKNKRAAL 428 (844)
T ss_pred cccCCCCHHHHHHHHHHHHHHHhccccCCHHHH
Confidence 001111367777666655555444444455554
No 65
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=99.96 E-value=6.5e-30 Score=273.17 Aligned_cols=316 Identities=19% Similarity=0.230 Sum_probs=215.5
Q ss_pred CCHHHHHHHHHHHHcCCeEEEEecCCCchhhhHHHHHHHHHHH--------HhcCCceEEEechhHHHHHHHHHHHHHHH
Q 001817 298 PSYKERDALLKAISENQVVVVSGETGCGKTTQLPQYILESETE--------AARGAACSIICTQPRRISAMAVSERVAAE 369 (1009)
Q Consensus 298 Pi~~~q~~il~~l~~~~~vII~apTGSGKTt~~~~~ile~~~~--------~~~~~~~~IvvtqPrR~La~qva~rva~e 369 (1009)
|+..|-+ -+..+..+++.|-.|-||||||+.+.++++-.+++ .+.|+.+.|+| |.|+||.|..+-+...
T Consensus 193 PTpIQvQ-GlPvvLsGRDmIGIAfTGSGKTlvFvLP~imf~LeqE~~lPf~~~EGP~gLiic--PSRELArQt~~iie~~ 269 (610)
T KOG0341|consen 193 PTPIQVQ-GLPVVLSGRDMIGIAFTGSGKTLVFVLPVIMFALEQEMMLPFARGEGPYGLIIC--PSRELARQTHDIIEQY 269 (610)
T ss_pred CCceeec-CcceEeecCceeeEEeecCCceEEEeHHHHHHHHHHHhcCccccCCCCeeEEEc--CcHHHHHHHHHHHHHH
Confidence 5555533 45567799999999999999998887776655543 34677788888 9999999999877655
Q ss_pred hC------Cc---ccceee-eeeeec-cccCCCcEEEEEccHHHHHHHhcCC-CCCCccEEEEeCCCcCCCcchHHHHHH
Q 001817 370 RG------EK---LGESVG-YKVRLE-GMKGRDTRLMFCTTGILLRRLLVDR-SLRGVTHVIVDEIHERGMNEDFLLIVL 437 (1009)
Q Consensus 370 ~~------~~---~g~~vG-y~vr~e-~~~~~~t~Iiv~T~g~Ll~~L~~~~-~l~~is~IIIDEaHeR~~~~d~ll~ll 437 (1009)
.. .. .+..+| ..++.. .......+|+|+|||+|.++|.... .|+-.+++.+|||+ |.++..|-..+-
T Consensus 270 ~~~L~e~g~P~lRs~LciGG~~v~eql~~v~~GvHivVATPGRL~DmL~KK~~sLd~CRyL~lDEAD-RmiDmGFEddir 348 (610)
T KOG0341|consen 270 VAALQEAGYPELRSLLCIGGVPVREQLDVVRRGVHIVVATPGRLMDMLAKKIMSLDACRYLTLDEAD-RMIDMGFEDDIR 348 (610)
T ss_pred HHHHHhcCChhhhhhhhhcCccHHHHHHHHhcCeeEEEcCcchHHHHHHHhhccHHHHHHhhhhhHH-HHhhccchhhHH
Confidence 31 11 111222 222211 1234678999999999999997666 78889999999999 545555443332
Q ss_pred HHHcccCCCCcEEEeccCCCHHHHHhhhCCCCeeccCCcccceeeEehhhHHHHhhhccCcccccccchhhhHHHHHHHH
Q 001817 438 KELLPRRPELRLILMSATLNAELFSSYFGGAPMLHIPGFTYPVRAYFLENILEMTRYRLNTYNQIDDYGQEKSWKMQKQA 517 (1009)
Q Consensus 438 k~ll~~~~~lkvIlmSATl~~~~~~~yf~~~pvi~i~g~~~pv~~~yl~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 517 (1009)
..+-......|.+++|||++.. +..|-.. .-.-||.+..-.. +. ..++
T Consensus 349 ~iF~~FK~QRQTLLFSATMP~K-IQ~FAkS-------ALVKPvtvNVGRA-----GA-----Asld-------------- 396 (610)
T KOG0341|consen 349 TIFSFFKGQRQTLLFSATMPKK-IQNFAKS-------ALVKPVTVNVGRA-----GA-----ASLD-------------- 396 (610)
T ss_pred HHHHHHhhhhheeeeeccccHH-HHHHHHh-------hcccceEEecccc-----cc-----cchh--------------
Confidence 2222233456899999999765 2221111 1112332221000 00 0000
Q ss_pred HHHHhhhhhHHHHHHHHHHHhhhcchhhhhhhccccCCCCCcchhhHHHHHHHHHhhcCCCcEEEEcCCHhHHHHHHHHH
Q 001817 518 LALRKRKSSIASAVEDALEAADFREYSVQTQQSLSCWNPDSIGFNLIEHVLCHIVKKERPGAVLVFMTGWDDINSLKDQL 597 (1009)
Q Consensus 518 ~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~~~~i~~l~~~L 597 (1009)
.-+-.+.+.+.. .+..++.. + +....++|||+..+.++..+.++|
T Consensus 397 ------ViQevEyVkqEa---------------------------KiVylLeC-L-QKT~PpVLIFaEkK~DVD~IhEYL 441 (610)
T KOG0341|consen 397 ------VIQEVEYVKQEA---------------------------KIVYLLEC-L-QKTSPPVLIFAEKKADVDDIHEYL 441 (610)
T ss_pred ------HHHHHHHHHhhh---------------------------hhhhHHHH-h-ccCCCceEEEeccccChHHHHHHH
Confidence 000001111110 11112222 2 234678999999999999999999
Q ss_pred HcCCCCCCCCCeEEEEecCCCCHHHHHhhcCCCCCCceEEEEecCccccccCCCCeeEEEeCCCCccccccCCCCCCccc
Q 001817 598 QAHPLLGDPSRVLLLACHGSMASSEQRLIFDKPEDGVRKIVLATNMAETSITINDVVFVIDCGKAKETSYDALNNTPCLL 677 (1009)
Q Consensus 598 ~~~~~~~~~~~~~v~~lHs~l~~~er~~v~~~f~~G~~kVLVATniae~GIdIp~V~~VId~g~~k~~~yd~~~~~~~l~ 677 (1009)
--. ++.+..+||+-.+++|...++.|+.|+-.|||||++|+.|+|+|+|.+|||+++|.
T Consensus 442 LlK-------GVEavaIHGGKDQedR~~ai~afr~gkKDVLVATDVASKGLDFp~iqHVINyDMP~-------------- 500 (610)
T KOG0341|consen 442 LLK-------GVEAVAIHGGKDQEDRHYAIEAFRAGKKDVLVATDVASKGLDFPDIQHVINYDMPE-------------- 500 (610)
T ss_pred HHc-------cceeEEeecCcchhHHHHHHHHHhcCCCceEEEecchhccCCCccchhhccCCChH--------------
Confidence 765 78899999999999999999999999999999999999999999999999988876
Q ss_pred ccccCHHhHHhhhcccCCCCC-CcEEEecchhh
Q 001817 678 PSWISKAAARQRRGRAGRVQP-GECYHLYPRYV 709 (1009)
Q Consensus 678 ~~~iS~as~~QR~GRAGR~~~-G~c~~Lys~~~ 709 (1009)
...+|.||+||+||.+. |..-.++.+..
T Consensus 501 ----eIENYVHRIGRTGRsg~~GiATTfINK~~ 529 (610)
T KOG0341|consen 501 ----EIENYVHRIGRTGRSGKTGIATTFINKNQ 529 (610)
T ss_pred ----HHHHHHHHhcccCCCCCcceeeeeecccc
Confidence 56799999999999965 98888877653
No 66
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=99.96 E-value=2.7e-29 Score=271.67 Aligned_cols=325 Identities=19% Similarity=0.313 Sum_probs=236.2
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHHHcCCeEEEEecCCCchhhhHHHHHHHHHHHHhcCCceEEEechhHHHHHHHHHHHHH
Q 001817 288 QKMLEFRRSLPSYKERDALLKAISENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVA 367 (1009)
Q Consensus 288 ~~l~~~r~~LPi~~~q~~il~~l~~~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~IvvtqPrR~La~qva~rva 367 (1009)
+.+..+-..-|...||.+|++.+ +|.++++++++|+|||.++...+++.+.. .-..+.+++++|+|+||.|+.+.+
T Consensus 39 rgiy~yGFekPSaIQqraI~p~i-~G~dv~~qaqsgTgKt~af~i~iLq~iD~--~~ke~qalilaPtreLa~qi~~v~- 114 (397)
T KOG0327|consen 39 RGIYAYGFEKPSAIQQRAILPCI-KGHDVIAQAQSGTGKTAAFLISILQQIDM--SVKETQALILAPTRELAQQIQKVV- 114 (397)
T ss_pred hHHHhhccCCchHHHhccccccc-cCCceeEeeeccccchhhhHHHHHhhcCc--chHHHHHHHhcchHHHHHHHHHHH-
Confidence 45777778899999999999987 78999999999999999988888886632 234567888889999999999555
Q ss_pred HHhCCc----ccceeeeeeee---ccccCCCcEEEEEccHHHHHHHhcCC-CCCCccEEEEeCCCcCCCcchHHHHHHHH
Q 001817 368 AERGEK----LGESVGYKVRL---EGMKGRDTRLMFCTTGILLRRLLVDR-SLRGVTHVIVDEIHERGMNEDFLLIVLKE 439 (1009)
Q Consensus 368 ~e~~~~----~g~~vGy~vr~---e~~~~~~t~Iiv~T~g~Ll~~L~~~~-~l~~is~IIIDEaHeR~~~~d~ll~llk~ 439 (1009)
..+|.. +...+|-.... ........+|+++|||.++..+.... ....+.++|+||++|+ +.-+|...+...
T Consensus 115 ~~lg~~~~~~v~~~igg~~~~~~~~~i~~~~~hivvGTpgrV~dml~~~~l~~~~iKmfvlDEaDEm-Ls~gfkdqI~~i 193 (397)
T KOG0327|consen 115 RALGDHMDVSVHACIGGTNVRREDQALLKDKPHIVVGTPGRVFDMLNRGSLSTDGIKMFVLDEADEM-LSRGFKDQIYDI 193 (397)
T ss_pred HhhhcccceeeeeecCcccchhhhhhhhccCceeecCCchhHHHhhccccccccceeEEeecchHhh-hccchHHHHHHH
Confidence 333332 22233311111 12223457999999999999997665 5667999999999985 455555555444
Q ss_pred HcccCCCCcEEEeccCCCHHH--HHhhhCCCCeeccCCcccceeeEehhhHHHHhhhccCcccccccchhhhHHHHHHHH
Q 001817 440 LLPRRPELRLILMSATLNAEL--FSSYFGGAPMLHIPGFTYPVRAYFLENILEMTRYRLNTYNQIDDYGQEKSWKMQKQA 517 (1009)
Q Consensus 440 ll~~~~~lkvIlmSATl~~~~--~~~yf~~~pvi~i~g~~~pv~~~yl~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 517 (1009)
.....++.|++++|||++.+. +++-|... |+.+..-.+-+.
T Consensus 194 f~~lp~~vQv~l~SAT~p~~vl~vt~~f~~~----------pv~i~vkk~~lt--------------------------- 236 (397)
T KOG0327|consen 194 FQELPSDVQVVLLSATMPSDVLEVTKKFMRE----------PVRILVKKDELT--------------------------- 236 (397)
T ss_pred HHHcCcchhheeecccCcHHHHHHHHHhccC----------ceEEEecchhhh---------------------------
Confidence 555677899999999997653 33333222 222211110000
Q ss_pred HHHHhhhhhHHHHHHHHHHHhhhcchhhhhhhccccCCCCCcchhhHHHHHHHHHhhcCCCcEEEEcCCHhHHHHHHHHH
Q 001817 518 LALRKRKSSIASAVEDALEAADFREYSVQTQQSLSCWNPDSIGFNLIEHVLCHIVKKERPGAVLVFMTGWDDINSLKDQL 597 (1009)
Q Consensus 518 ~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~~~~i~~l~~~L 597 (1009)
.+.+.+.. -....+.+...++.+.. .....+|||+|++.+..+...|
T Consensus 237 ----------l~gikq~~---------------------i~v~k~~k~~~l~dl~~--~~~q~~if~nt~r~v~~l~~~L 283 (397)
T KOG0327|consen 237 ----------LEGIKQFY---------------------INVEKEEKLDTLCDLYR--RVTQAVIFCNTRRKVDNLTDKL 283 (397)
T ss_pred ----------hhheeeee---------------------eeccccccccHHHHHHH--hhhcceEEecchhhHHHHHHHH
Confidence 00000000 00000113344566666 5578999999999999999999
Q ss_pred HcCCCCCCCCCeEEEEecCCCCHHHHHhhcCCCCCCceEEEEecCccccccCCCCeeEEEeCCCCccccccCCCCCCccc
Q 001817 598 QAHPLLGDPSRVLLLACHGSMASSEQRLIFDKPEDGVRKIVLATNMAETSITINDVVFVIDCGKAKETSYDALNNTPCLL 677 (1009)
Q Consensus 598 ~~~~~~~~~~~~~v~~lHs~l~~~er~~v~~~f~~G~~kVLVATniae~GIdIp~V~~VId~g~~k~~~yd~~~~~~~l~ 677 (1009)
..+ ++.+..+||.|.+.+|..+...|+.|..+|||+|+.+++|+|+..+..||++.+|.
T Consensus 284 ~~~-------~~~~s~~~~d~~q~~R~~~~~ef~~gssrvlIttdl~argidv~~~slvinydlP~-------------- 342 (397)
T KOG0327|consen 284 RAH-------GFTVSAIHGDMEQNERDTLMREFRSGSSRVLITTDLLARGIDVQQVSLVVNYDLPA-------------- 342 (397)
T ss_pred hhC-------CceEEEeecccchhhhhHHHHHhhcCCceEEeeccccccccchhhcceeeeecccc--------------
Confidence 776 77899999999999999999999999999999999999999999999999977775
Q ss_pred ccccCHHhHHhhhcccCCCC-CCcEEEecchhhhhh
Q 001817 678 PSWISKAAARQRRGRAGRVQ-PGECYHLYPRYVYDA 712 (1009)
Q Consensus 678 ~~~iS~as~~QR~GRAGR~~-~G~c~~Lys~~~~~~ 712 (1009)
-+.+|.||+||+||.| +|....+.++.+...
T Consensus 343 ----~~~~yihR~gr~gr~grkg~~in~v~~~d~~~ 374 (397)
T KOG0327|consen 343 ----RKENYIHRIGRAGRFGRKGVAINFVTEEDVRD 374 (397)
T ss_pred ----chhhhhhhcccccccCCCceeeeeehHhhHHH
Confidence 5668889999999994 699999988866544
No 67
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=99.96 E-value=4.4e-29 Score=271.61 Aligned_cols=312 Identities=22% Similarity=0.240 Sum_probs=219.8
Q ss_pred hcCCCCHHHHHHHHHHHHcCCeEEEEecCCCchhhhHHHHHHHHHHHHhc----CCceEEEechhHHHHHHHHHHHHHHH
Q 001817 294 RRSLPSYKERDALLKAISENQVVVVSGETGCGKTTQLPQYILESETEAAR----GAACSIICTQPRRISAMAVSERVAAE 369 (1009)
Q Consensus 294 r~~LPi~~~q~~il~~l~~~~~vII~apTGSGKTt~~~~~ile~~~~~~~----~~~~~IvvtqPrR~La~qva~rva~e 369 (1009)
--.-|.-.|+.+|.-++ +|++++..|.||||||.++.+++++.++.... ..+...++++|||+||.|++..+.+.
T Consensus 38 G~ekpTlIQs~aIplaL-EgKDvvarArTGSGKT~AYliPllqkll~~k~t~~~e~~~sa~iLvPTkEL~qQvy~viekL 116 (569)
T KOG0346|consen 38 GWEKPTLIQSSAIPLAL-EGKDVVARARTGSGKTAAYLIPLLQKLLAEKKTNDGEQGPSAVILVPTKELAQQVYKVIEKL 116 (569)
T ss_pred CcCCcchhhhcccchhh-cCcceeeeeccCCCchHHHHHHHHHHHHHhhhcccccccceeEEEechHHHHHHHHHHHHHH
Confidence 34568888877766555 78899999999999999999999999886532 12344566669999999999887554
Q ss_pred hCCcccceeeeeeeec------------cccCCCcEEEEEccHHHHHHHhcCC--CCCCccEEEEeCCCc---CCCcchH
Q 001817 370 RGEKLGESVGYKVRLE------------GMKGRDTRLMFCTTGILLRRLLVDR--SLRGVTHVIVDEIHE---RGMNEDF 432 (1009)
Q Consensus 370 ~~~~~g~~vGy~vr~e------------~~~~~~t~Iiv~T~g~Ll~~L~~~~--~l~~is~IIIDEaHe---R~~~~d~ 432 (1009)
. ..++-.+|.- ......++|+|+||+.+++.+..+. .+..++++|+|||+- .|.+.|
T Consensus 117 ~-----~~c~k~lr~~nl~s~~sdsv~~~~L~d~pdIvV~TP~~ll~~~~~~~~~~~~~l~~LVvDEADLllsfGYeed- 190 (569)
T KOG0346|consen 117 V-----EYCSKDLRAINLASSMSDSVNSVALMDLPDIVVATPAKLLRHLAAGVLEYLDSLSFLVVDEADLLLSFGYEED- 190 (569)
T ss_pred H-----HHHHHhhhhhhhhcccchHHHHHHHccCCCeEEeChHHHHHHHhhccchhhhheeeEEechhhhhhhcccHHH-
Confidence 2 1111111110 1122568999999999999998877 688999999999993 333333
Q ss_pred HHHHHHHHcc-cCCCCcEEEeccCC--CHHHHHhhhCCCCeeccCCcccceeeEehhhHHHHhhhccCcccccccchhhh
Q 001817 433 LLIVLKELLP-RRPELRLILMSATL--NAELFSSYFGGAPMLHIPGFTYPVRAYFLENILEMTRYRLNTYNQIDDYGQEK 509 (1009)
Q Consensus 433 ll~llk~ll~-~~~~lkvIlmSATl--~~~~~~~yf~~~pvi~i~g~~~pv~~~yl~~i~~~~~~~~~~~~~i~~~~~~~ 509 (1009)
++.+.. ..+..|.++||||+ |...+.+.|-..|++. ...++ .+..+.++..|..
T Consensus 191 ----lk~l~~~LPr~~Q~~LmSATl~dDv~~LKkL~l~nPviL----------kl~e~-------el~~~dqL~Qy~v-- 247 (569)
T KOG0346|consen 191 ----LKKLRSHLPRIYQCFLMSATLSDDVQALKKLFLHNPVIL----------KLTEG-------ELPNPDQLTQYQV-- 247 (569)
T ss_pred ----HHHHHHhCCchhhheeehhhhhhHHHHHHHHhccCCeEE----------Eeccc-------cCCCcccceEEEE--
Confidence 333333 34577999999999 5667777776555431 11110 0000011100000
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhcchhhhhhhccccCCCCCcchhhHHHHHHHHHh-hcCCCcEEEEcCCHh
Q 001817 510 SWKMQKQALALRKRKSSIASAVEDALEAADFREYSVQTQQSLSCWNPDSIGFNLIEHVLCHIVK-KERPGAVLVFMTGWD 588 (1009)
Q Consensus 510 ~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~-~~~~g~iLVFl~~~~ 588 (1009)
.+.. +.+..+++.+++ +.-.|++|||+++.+
T Consensus 248 -----------------------------------------------~cse-~DKflllyallKL~LI~gKsliFVNtId 279 (569)
T KOG0346|consen 248 -----------------------------------------------KCSE-EDKFLLLYALLKLRLIRGKSLIFVNTID 279 (569)
T ss_pred -----------------------------------------------Eecc-chhHHHHHHHHHHHHhcCceEEEEechh
Confidence 0000 011112222222 224689999999999
Q ss_pred HHHHHHHHHHcCCCCCCCCCeEEEEecCCCCHHHHHhhcCCCCCCceEEEEecCc-------------------------
Q 001817 589 DINSLKDQLQAHPLLGDPSRVLLLACHGSMASSEQRLIFDKPEDGVRKIVLATNM------------------------- 643 (1009)
Q Consensus 589 ~i~~l~~~L~~~~~~~~~~~~~v~~lHs~l~~~er~~v~~~f~~G~~kVLVATni------------------------- 643 (1009)
.+.++.-.|+.. ++....+.|.||..-|.-|++.|..|...|||||+.
T Consensus 280 r~YrLkLfLeqF-------GiksciLNseLP~NSR~Hii~QFNkG~YdivIAtD~s~~~~~~eee~kgk~~e~~~kndkk 352 (569)
T KOG0346|consen 280 RCYRLKLFLEQF-------GIKSCILNSELPANSRCHIIEQFNKGLYDIVIATDDSADGDKLEEEVKGKSDEKNPKNDKK 352 (569)
T ss_pred hhHHHHHHHHHh-------CcHhhhhcccccccchhhHHHHhhCcceeEEEEccCccchhhhhccccccccccCCCCccc
Confidence 999999999987 677888999999999999999999999999999991
Q ss_pred ----------cccccCCCCeeEEEeCCCCccccccCCCCCCcccccccCHHhHHhhhcccCCC-CCCcEEEecchh
Q 001817 644 ----------AETSITINDVVFVIDCGKAKETSYDALNNTPCLLPSWISKAAARQRRGRAGRV-QPGECYHLYPRY 708 (1009)
Q Consensus 644 ----------ae~GIdIp~V~~VId~g~~k~~~yd~~~~~~~l~~~~iS~as~~QR~GRAGR~-~~G~c~~Lys~~ 708 (1009)
.++|||+..|..|||+++|. +..+|+||+||++|. .+|.+..+..+.
T Consensus 353 skkK~D~E~GVsRGIDF~~V~~VlNFD~P~------------------t~~sYIHRvGRTaRg~n~GtalSfv~P~ 410 (569)
T KOG0346|consen 353 SKKKLDKESGVSRGIDFHHVSNVLNFDFPE------------------TVTSYIHRVGRTARGNNKGTALSFVSPK 410 (569)
T ss_pred cccccCchhchhccccchheeeeeecCCCC------------------chHHHHHhccccccCCCCCceEEEecch
Confidence 25899999999999988887 667899999999999 469988886653
No 68
>KOG4284 consensus DEAD box protein [Transcription]
Probab=99.96 E-value=2.1e-28 Score=275.58 Aligned_cols=323 Identities=19% Similarity=0.271 Sum_probs=240.9
Q ss_pred hhcCCCCHHHHHHHHHHHHcCCeEEEEecCCCchhhhHHHHHHHHHHHHhcCCceEEEechhHHHHHHHHHHHHHHHh--
Q 001817 293 FRRSLPSYKERDALLKAISENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAER-- 370 (1009)
Q Consensus 293 ~r~~LPi~~~q~~il~~l~~~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~IvvtqPrR~La~qva~rva~e~-- 370 (1009)
....+|...|-.+ +.++..+-++||++..|+|||+++....++.+.. +.....+++++|||++|.|+.+.+....
T Consensus 43 n~f~~ptkiQaaA-IP~~~~kmDliVQaKSGTGKTlVfsv~av~sl~~--~~~~~q~~Iv~PTREiaVQI~~tv~~v~~s 119 (980)
T KOG4284|consen 43 NAFALPTKIQAAA-IPAIFSKMDLIVQAKSGTGKTLVFSVLAVESLDS--RSSHIQKVIVTPTREIAVQIKETVRKVAPS 119 (980)
T ss_pred hcccCCCchhhhh-hhhhhcccceEEEecCCCCceEEEEeeeehhcCc--ccCcceeEEEecchhhhhHHHHHHHHhccc
Confidence 3346788777555 5566688899999999999999998888887643 3445667777799999999999887653
Q ss_pred --CCcccceee-eeeeeccccCCCcEEEEEccHHHHHHHhcCC-CCCCccEEEEeCCCcCCCcchHHHHHHHHHcccC-C
Q 001817 371 --GEKLGESVG-YKVRLEGMKGRDTRLMFCTTGILLRRLLVDR-SLRGVTHVIVDEIHERGMNEDFLLIVLKELLPRR-P 445 (1009)
Q Consensus 371 --~~~~g~~vG-y~vr~e~~~~~~t~Iiv~T~g~Ll~~L~~~~-~l~~is~IIIDEaHeR~~~~d~ll~llk~ll~~~-~ 445 (1009)
|..+...+| -....+...-..++|+|+|||+++.++..+- ..+.++++|+|||+.. +++..+..-+..++..- .
T Consensus 120 f~g~~csvfIGGT~~~~d~~rlk~~rIvIGtPGRi~qL~el~~~n~s~vrlfVLDEADkL-~~t~sfq~~In~ii~slP~ 198 (980)
T KOG4284|consen 120 FTGARCSVFIGGTAHKLDLIRLKQTRIVIGTPGRIAQLVELGAMNMSHVRLFVLDEADKL-MDTESFQDDINIIINSLPQ 198 (980)
T ss_pred ccCcceEEEecCchhhhhhhhhhhceEEecCchHHHHHHHhcCCCccceeEEEeccHHhh-hchhhHHHHHHHHHHhcch
Confidence 344444444 2222333334679999999999999887766 7899999999999963 55555555555555544 4
Q ss_pred CCcEEEeccCCCH---HHHHhhhCCCCeeccCCcc---cceeeEehhhHHHHhhhccCcccccccchhhhHHHHHHHHHH
Q 001817 446 ELRLILMSATLNA---ELFSSYFGGAPMLHIPGFT---YPVRAYFLENILEMTRYRLNTYNQIDDYGQEKSWKMQKQALA 519 (1009)
Q Consensus 446 ~lkvIlmSATl~~---~~~~~yf~~~pvi~i~g~~---~pv~~~yl~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 519 (1009)
..|++++|||.+. +.+++|+.++-.+....+. +-++.++..- ..+
T Consensus 199 ~rQv~a~SATYp~nLdn~Lsk~mrdp~lVr~n~~d~~L~GikQyv~~~--------~s~--------------------- 249 (980)
T KOG4284|consen 199 IRQVAAFSATYPRNLDNLLSKFMRDPALVRFNADDVQLFGIKQYVVAK--------CSP--------------------- 249 (980)
T ss_pred hheeeEEeccCchhHHHHHHHHhcccceeecccCCceeechhheeeec--------cCC---------------------
Confidence 5689999999964 5688888766555443221 2222222110 000
Q ss_pred HHhhhhhHHHHHHHHHHHhhhcchhhhhhhccccCCCCCcchhhHHHHHHHHHhhcCCCcEEEEcCCHhHHHHHHHHHHc
Q 001817 520 LRKRKSSIASAVEDALEAADFREYSVQTQQSLSCWNPDSIGFNLIEHVLCHIVKKERPGAVLVFMTGWDDINSLKDQLQA 599 (1009)
Q Consensus 520 ~~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~~~~i~~l~~~L~~ 599 (1009)
+.....+.++...|.++++.-+-...||||+....++.++..|..
T Consensus 250 -----------------------------------nnsveemrlklq~L~~vf~~ipy~QAlVF~~~~sra~~~a~~L~s 294 (980)
T KOG4284|consen 250 -----------------------------------NNSVEEMRLKLQKLTHVFKSIPYVQALVFCDQISRAEPIATHLKS 294 (980)
T ss_pred -----------------------------------cchHHHHHHHHHHHHHHHhhCchHHHHhhhhhhhhhhHHHHHhhc
Confidence 000011234455677888887888999999999999999999998
Q ss_pred CCCCCCCCCeEEEEecCCCCHHHHHhhcCCCCCCceEEEEecCccccccCCCCeeEEEeCCCCccccccCCCCCCccccc
Q 001817 600 HPLLGDPSRVLLLACHGSMASSEQRLIFDKPEDGVRKIVLATNMAETSITINDVVFVIDCGKAKETSYDALNNTPCLLPS 679 (1009)
Q Consensus 600 ~~~~~~~~~~~v~~lHs~l~~~er~~v~~~f~~G~~kVLVATniae~GIdIp~V~~VId~g~~k~~~yd~~~~~~~l~~~ 679 (1009)
. ++.+..+.|.|++.+|..+++..+.-..+|||||+..++|||-|.|+.|||.+.|.
T Consensus 295 s-------G~d~~~ISgaM~Q~~Rl~a~~~lr~f~~rILVsTDLtaRGIDa~~vNLVVNiD~p~---------------- 351 (980)
T KOG4284|consen 295 S-------GLDVTFISGAMSQKDRLLAVDQLRAFRVRILVSTDLTARGIDADNVNLVVNIDAPA---------------- 351 (980)
T ss_pred c-------CCCeEEeccccchhHHHHHHHHhhhceEEEEEecchhhccCCccccceEEecCCCc----------------
Confidence 6 78899999999999999999999999999999999999999999999999976664
Q ss_pred ccCHHhHHhhhcccCCCCC-CcEEEecchh
Q 001817 680 WISKAAARQRRGRAGRVQP-GECYHLYPRY 708 (1009)
Q Consensus 680 ~iS~as~~QR~GRAGR~~~-G~c~~Lys~~ 708 (1009)
+-..|.||+|||||.|. |..+.++-..
T Consensus 352 --d~eTY~HRIGRAgRFG~~G~aVT~~~~~ 379 (980)
T KOG4284|consen 352 --DEETYFHRIGRAGRFGAHGAAVTLLEDE 379 (980)
T ss_pred --chHHHHHHhhhcccccccceeEEEeccc
Confidence 56688899999999976 9988886543
No 69
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.96 E-value=4.8e-28 Score=273.97 Aligned_cols=329 Identities=17% Similarity=0.207 Sum_probs=228.9
Q ss_pred HHHhhcCCCCHHHHHHHHHHHHcCCeEEEEecCCCchhhhHHHHHHHHHHHHhc---CCceEEEechhHHHHHHHHHHHH
Q 001817 290 MLEFRRSLPSYKERDALLKAISENQVVVVSGETGCGKTTQLPQYILESETEAAR---GAACSIICTQPRRISAMAVSERV 366 (1009)
Q Consensus 290 l~~~r~~LPi~~~q~~il~~l~~~~~vII~apTGSGKTt~~~~~ile~~~~~~~---~~~~~IvvtqPrR~La~qva~rv 366 (1009)
+......-|...|.++| ..+..+++++.|||||||||+++.++++..+..... ..+-+.+++.|+|+||.|++..+
T Consensus 151 l~~~~F~~Pt~iq~~ai-pvfl~~r~~lAcapTGsgKtlaf~~Pil~~L~~~~~~~~~~gl~a~Il~ptreLa~Qi~re~ 229 (593)
T KOG0344|consen 151 LQELGFDEPTPIQKQAI-PVFLEKRDVLACAPTGSGKTLAFNLPILQHLKDLSQEKHKVGLRALILSPTRELAAQIYREM 229 (593)
T ss_pred HhhCCCCCCCcccchhh-hhhhcccceEEeccCCCcchhhhhhHHHHHHHHhhcccCccceEEEEecchHHHHHHHHHHH
Confidence 44444566888877555 556689999999999999999999999998876442 34567788889999999999988
Q ss_pred HHHhCC--cccceee--eee----eeccccCCCcEEEEEccHHHHHHHhcCC---CCCCccEEEEeCCCcCCCcchHHHH
Q 001817 367 AAERGE--KLGESVG--YKV----RLEGMKGRDTRLMFCTTGILLRRLLVDR---SLRGVTHVIVDEIHERGMNEDFLLI 435 (1009)
Q Consensus 367 a~e~~~--~~g~~vG--y~v----r~e~~~~~~t~Iiv~T~g~Ll~~L~~~~---~l~~is~IIIDEaHeR~~~~d~ll~ 435 (1009)
.+..-. .-....+ |.. ..........+|++.||-.+...+..++ .+..+.++|+||++. -....++..
T Consensus 230 ~k~~~~~~t~~~a~~~~~~~~~~qk~a~~~~~k~dili~TP~ri~~~~~~~~~~idl~~V~~lV~dEaD~-lfe~~~f~~ 308 (593)
T KOG0344|consen 230 RKYSIDEGTSLRAAQFSKPAYPSQKPAFLSDEKYDILISTPMRIVGLLGLGKLNIDLSKVEWLVVDEADL-LFEPEFFVE 308 (593)
T ss_pred HhcCCCCCCchhhhhcccccchhhccchhHHHHHHHHhcCHHHHHHHhcCCCccchhheeeeEeechHHh-hhChhhHHH
Confidence 665411 1111111 110 0111112457899999999999888776 789999999999994 233335555
Q ss_pred HHHHHcc--cCCCCcEEEeccCCCHHHHHhhhCCCCeeccCCcccceeeEehhhHHHHhhhccCcccccccchhhhHHHH
Q 001817 436 VLKELLP--RRPELRLILMSATLNAELFSSYFGGAPMLHIPGFTYPVRAYFLENILEMTRYRLNTYNQIDDYGQEKSWKM 513 (1009)
Q Consensus 436 llk~ll~--~~~~lkvIlmSATl~~~~~~~yf~~~pvi~i~g~~~pv~~~yl~~i~~~~~~~~~~~~~i~~~~~~~~~~~ 513 (1009)
.+..++. ..|++++=++|||++.. +.+|..- -...++.+.+-..
T Consensus 309 Qla~I~sac~s~~i~~a~FSat~~~~-VEE~~~~-------i~~~~~~vivg~~-------------------------- 354 (593)
T KOG0344|consen 309 QLADIYSACQSPDIRVALFSATISVY-VEEWAEL-------IKSDLKRVIVGLR-------------------------- 354 (593)
T ss_pred HHHHHHHHhcCcchhhhhhhccccHH-HHHHHHH-------hhccceeEEEecc--------------------------
Confidence 5555544 34788899999998543 2223210 0001111111100
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHhhhcchhhhhhhccccCCCCCcchhhHHHHHHHHHhhcCCCcEEEEcCCHhHHHHH
Q 001817 514 QKQALALRKRKSSIASAVEDALEAADFREYSVQTQQSLSCWNPDSIGFNLIEHVLCHIVKKERPGAVLVFMTGWDDINSL 593 (1009)
Q Consensus 514 ~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~~~~i~~l 593 (1009)
+.....+++.+..+. ...-+...+..++...-..++|||+.+.+.+..|
T Consensus 355 -----------~sa~~~V~QelvF~g--------------------se~~K~lA~rq~v~~g~~PP~lIfVQs~eRak~L 403 (593)
T KOG0344|consen 355 -----------NSANETVDQELVFCG--------------------SEKGKLLALRQLVASGFKPPVLIFVQSKERAKQL 403 (593)
T ss_pred -----------hhHhhhhhhhheeee--------------------cchhHHHHHHHHHhccCCCCeEEEEecHHHHHHH
Confidence 000111222111100 0001112244455555678999999999999999
Q ss_pred HHHHHcCCCCCCCCCeEEEEecCCCCHHHHHhhcCCCCCCceEEEEecCccccccCCCCeeEEEeCCCCccccccCCCCC
Q 001817 594 KDQLQAHPLLGDPSRVLLLACHGSMASSEQRLIFDKPEDGVRKIVLATNMAETSITINDVVFVIDCGKAKETSYDALNNT 673 (1009)
Q Consensus 594 ~~~L~~~~~~~~~~~~~v~~lHs~l~~~er~~v~~~f~~G~~kVLVATniae~GIdIp~V~~VId~g~~k~~~yd~~~~~ 673 (1009)
...|... +++.|..+||..++.+|..+++.|+.|++.|++||+++++|+|+-+|+.|||+++|.
T Consensus 404 ~~~L~~~------~~i~v~vIh~e~~~~qrde~~~~FR~g~IwvLicTdll~RGiDf~gvn~VInyD~p~---------- 467 (593)
T KOG0344|consen 404 FEELEIY------DNINVDVIHGERSQKQRDETMERFRIGKIWVLICTDLLARGIDFKGVNLVINYDFPQ---------- 467 (593)
T ss_pred HHHhhhc------cCcceeeEecccchhHHHHHHHHHhccCeeEEEehhhhhccccccCcceEEecCCCc----------
Confidence 9999622 367799999999999999999999999999999999999999999999999988887
Q ss_pred CcccccccCHHhHHhhhcccCCCCC-CcEEEecchhh
Q 001817 674 PCLLPSWISKAAARQRRGRAGRVQP-GECYHLYPRYV 709 (1009)
Q Consensus 674 ~~l~~~~iS~as~~QR~GRAGR~~~-G~c~~Lys~~~ 709 (1009)
|..+|+||+||+||.++ |++|.+|+.++
T Consensus 468 --------s~~syihrIGRtgRag~~g~Aitfytd~d 496 (593)
T KOG0344|consen 468 --------SDLSYIHRIGRTGRAGRSGKAITFYTDQD 496 (593)
T ss_pred --------hhHHHHHHhhccCCCCCCcceEEEecccc
Confidence 77899999999999965 99999999854
No 70
>PRK13766 Hef nuclease; Provisional
Probab=99.95 E-value=5.9e-27 Score=294.70 Aligned_cols=383 Identities=16% Similarity=0.173 Sum_probs=223.0
Q ss_pred CCCCHHHHHHHHHHHHcCCeEEEEecCCCchhhhHHHHHHHHHHHHhcCCceEEEechhHHHHHHHHHHHHHHHhCCc--
Q 001817 296 SLPSYKERDALLKAISENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERGEK-- 373 (1009)
Q Consensus 296 ~LPi~~~q~~il~~l~~~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~IvvtqPrR~La~qva~rva~e~~~~-- 373 (1009)
.+....+|.++...+..+ +++|++|||+|||.++.+.+...+. ....+++++.|+++|+.|+++.+...++..
T Consensus 13 ~~~~r~yQ~~~~~~~l~~-n~lv~~ptG~GKT~~a~~~i~~~l~----~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~~ 87 (773)
T PRK13766 13 TIEARLYQQLLAATALKK-NTLVVLPTGLGKTAIALLVIAERLH----KKGGKVLILAPTKPLVEQHAEFFRKFLNIPEE 87 (773)
T ss_pred cCCccHHHHHHHHHHhcC-CeEEEcCCCccHHHHHHHHHHHHHH----hCCCeEEEEeCcHHHHHHHHHHHHHHhCCCCc
Confidence 456677888888776665 8899999999999988877776552 234578888899999999999998877652
Q ss_pred -ccceeeeeeeec-cccCCCcEEEEEccHHHHHHHhcCC-CCCCccEEEEeCCCcCCCcchHHHHHHHHHcccCCCCcEE
Q 001817 374 -LGESVGYKVRLE-GMKGRDTRLMFCTTGILLRRLLVDR-SLRGVTHVIVDEIHERGMNEDFLLIVLKELLPRRPELRLI 450 (1009)
Q Consensus 374 -~g~~vGy~vr~e-~~~~~~t~Iiv~T~g~Ll~~L~~~~-~l~~is~IIIDEaHeR~~~~d~ll~llk~ll~~~~~lkvI 450 (1009)
+....|-....+ .....+.+|+|+||+++...+.... .+.++++|||||||+- ........+.+......+..+++
T Consensus 88 ~v~~~~g~~~~~~r~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~liVvDEaH~~-~~~~~~~~i~~~~~~~~~~~~il 166 (773)
T PRK13766 88 KIVVFTGEVSPEKRAELWEKAKVIVATPQVIENDLIAGRISLEDVSLLIFDEAHRA-VGNYAYVYIAERYHEDAKNPLVL 166 (773)
T ss_pred eEEEEeCCCCHHHHHHHHhCCCEEEECHHHHHHHHHcCCCChhhCcEEEEECCccc-cccccHHHHHHHHHhcCCCCEEE
Confidence 222222100000 0011357899999999988776655 6789999999999953 22222223344444445567799
Q ss_pred EeccCC--CHHHHHhhhCCC--CeeccC--------CcccceeeEeh-----hhH---HHHhh-------hccCcccccc
Q 001817 451 LMSATL--NAELFSSYFGGA--PMLHIP--------GFTYPVRAYFL-----ENI---LEMTR-------YRLNTYNQID 503 (1009)
Q Consensus 451 lmSATl--~~~~~~~yf~~~--pvi~i~--------g~~~pv~~~yl-----~~i---~~~~~-------~~~~~~~~i~ 503 (1009)
+||||+ +.+.+.+...+- ..+.+. ....+.++.+. +.. ..... ..+.......
T Consensus 167 ~lTaTP~~~~~~i~~~~~~L~i~~v~~~~~~~~~v~~~~~~~~v~~~~v~l~~~~~~i~~~l~~~~~~~l~~l~~~~~~~ 246 (773)
T PRK13766 167 GLTASPGSDEEKIKEVCENLGIEHVEVRTEDDPDVKPYVHKVKIEWVRVELPEELKEIRDLLNEALKDRLKKLKELGVIV 246 (773)
T ss_pred EEEcCCCCCHHHHHHHHHhCCceEEEEcCCCChhHHhhhccceeEEEEeCCcHHHHHHHHHHHHHHHHHHHHHHHCCCcc
Confidence 999998 333333322210 111111 11111111110 110 00000 0000000000
Q ss_pred cc----hhhhHHHHHHHHHHH-----------------HhhhhhHH--------HHHHHHHHHhhhcch-----------
Q 001817 504 DY----GQEKSWKMQKQALAL-----------------RKRKSSIA--------SAVEDALEAADFREY----------- 543 (1009)
Q Consensus 504 ~~----~~~~~~~~~~~~~~~-----------------~~~~~~~~--------~~v~~~l~~~~~~~~----------- 543 (1009)
.. .........+..... ........ ..+...+........
T Consensus 247 ~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~y~~~l~~~~~~~~~~~~~~~l 326 (773)
T PRK13766 247 SISPDVSKKELLGLQKKLQQEIANDDSEGYEAISILAEAMKLRHAVELLETQGVEALRRYLERLREEARSSGGSKASKRL 326 (773)
T ss_pred cCCCCcCHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhhccccCCcHHHHHH
Confidence 00 000000000000000 00000000 000000000000000
Q ss_pred -----hhhhhhccccCCCCCcchhhHHHHHHHHHhhcCCCcEEEEcCCHhHHHHHHHHHHcCCCCCCCCCeEEEEecCC-
Q 001817 544 -----SVQTQQSLSCWNPDSIGFNLIEHVLCHIVKKERPGAVLVFMTGWDDINSLKDQLQAHPLLGDPSRVLLLACHGS- 617 (1009)
Q Consensus 544 -----~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~~~~i~~l~~~L~~~~~~~~~~~~~v~~lHs~- 617 (1009)
.......+..........+.+..++..+....+.+++||||.+++.++.+.+.|... ++.+..+||.
T Consensus 327 ~~~~~~~~~~~~~~~~~~~~pK~~~L~~il~~~~~~~~~~kvlIF~~~~~t~~~L~~~L~~~-------~~~~~~~~g~~ 399 (773)
T PRK13766 327 VEDPRFRKAVRKAKELDIEHPKLEKLREIVKEQLGKNPDSRIIVFTQYRDTAEKIVDLLEKE-------GIKAVRFVGQA 399 (773)
T ss_pred HhCHHHHHHHHHHHhcccCChHHHHHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHhC-------CCceEEEEccc
Confidence 000000001111122234445556666655567789999999999999999999764 4445666664
Q ss_pred -------CCHHHHHhhcCCCCCCceEEEEecCccccccCCCCeeEEEeCCCCccccccCCCCCCcccccccCHHhHHhhh
Q 001817 618 -------MASSEQRLIFDKPEDGVRKIVLATNMAETSITINDVVFVIDCGKAKETSYDALNNTPCLLPSWISKAAARQRR 690 (1009)
Q Consensus 618 -------l~~~er~~v~~~f~~G~~kVLVATniae~GIdIp~V~~VId~g~~k~~~yd~~~~~~~l~~~~iS~as~~QR~ 690 (1009)
|++.+|..+++.|++|..+|||||+++++|+|+|++++||+++.+. |...++||+
T Consensus 400 ~~~~~~~~~~~~r~~~~~~F~~g~~~vLvaT~~~~eGldi~~~~~VI~yd~~~------------------s~~r~iQR~ 461 (773)
T PRK13766 400 SKDGDKGMSQKEQIEILDKFRAGEFNVLVSTSVAEEGLDIPSVDLVIFYEPVP------------------SEIRSIQRK 461 (773)
T ss_pred cccccCCCCHHHHHHHHHHHHcCCCCEEEECChhhcCCCcccCCEEEEeCCCC------------------CHHHHHHHh
Confidence 9999999999999999999999999999999999999999954433 666888999
Q ss_pred cccCCCCCCcEEEecchhh
Q 001817 691 GRAGRVQPGECYHLYPRYV 709 (1009)
Q Consensus 691 GRAGR~~~G~c~~Lys~~~ 709 (1009)
||+||.++|.+|.|+++..
T Consensus 462 GR~gR~~~~~v~~l~~~~t 480 (773)
T PRK13766 462 GRTGRQEEGRVVVLIAKGT 480 (773)
T ss_pred cccCcCCCCEEEEEEeCCC
Confidence 9999999999999987543
No 71
>PHA02558 uvsW UvsW helicase; Provisional
Probab=99.95 E-value=2e-27 Score=283.26 Aligned_cols=317 Identities=15% Similarity=0.091 Sum_probs=194.6
Q ss_pred CCHHHHHHHHHHHHcCCeEEEEecCCCchhhhHHHHHHHHHHHHhcCCceEEEechhHHHHHHHHHHHHHHHhCCcccce
Q 001817 298 PSYKERDALLKAISENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERGEKLGES 377 (1009)
Q Consensus 298 Pi~~~q~~il~~l~~~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~IvvtqPrR~La~qva~rva~e~~~~~g~~ 377 (1009)
..+.+|.+.+..+..++..++++|||+|||..+...+ ...... ..++++|++||++|+.|+.+++.+.........
T Consensus 114 ~~r~~Q~~av~~~l~~~~~il~apTGsGKT~i~~~l~-~~~~~~---~~~~vLilvpt~eL~~Q~~~~l~~~~~~~~~~~ 189 (501)
T PHA02558 114 EPHWYQYDAVYEGLKNNRRLLNLPTSAGKSLIQYLLS-RYYLEN---YEGKVLIIVPTTSLVTQMIDDFVDYRLFPREAM 189 (501)
T ss_pred CCCHHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHH-HHHHhc---CCCeEEEEECcHHHHHHHHHHHHHhccccccce
Confidence 3444455555555567788999999999998765432 222221 234788888999999999999977553322211
Q ss_pred eeeeeeeccccCCCcEEEEEccHHHHHHHhcCCCCCCccEEEEeCCCcCCCcchHHHHHHHHHcccCCCCcEEEeccCCC
Q 001817 378 VGYKVRLEGMKGRDTRLMFCTTGILLRRLLVDRSLRGVTHVIVDEIHERGMNEDFLLIVLKELLPRRPELRLILMSATLN 457 (1009)
Q Consensus 378 vGy~vr~e~~~~~~t~Iiv~T~g~Ll~~L~~~~~l~~is~IIIDEaHeR~~~~d~ll~llk~ll~~~~~lkvIlmSATl~ 457 (1009)
.+. ........+.+|+|+|++.+.+... .+++++++||+||||+- ..+.+..+++.+ .+..++++||||+.
T Consensus 190 ~~i--~~g~~~~~~~~I~VaT~qsl~~~~~--~~~~~~~~iIvDEaH~~--~~~~~~~il~~~---~~~~~~lGLTATp~ 260 (501)
T PHA02558 190 HKI--YSGTAKDTDAPIVVSTWQSAVKQPK--EWFDQFGMVIVDECHLF--TGKSLTSIITKL---DNCKFKFGLTGSLR 260 (501)
T ss_pred eEE--ecCcccCCCCCEEEeeHHHHhhchh--hhccccCEEEEEchhcc--cchhHHHHHHhh---hccceEEEEeccCC
Confidence 121 1111122457899999999876432 26789999999999963 233333333332 12346899999994
Q ss_pred HHH-----HHhhhCCCCeecc-------CCcccceeeEehhhHHHHhhhccCcccccccchhhhHHHHHHHHHHHHhhhh
Q 001817 458 AEL-----FSSYFGGAPMLHI-------PGFTYPVRAYFLENILEMTRYRLNTYNQIDDYGQEKSWKMQKQALALRKRKS 525 (1009)
Q Consensus 458 ~~~-----~~~yf~~~pvi~i-------~g~~~pv~~~yl~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 525 (1009)
... +..+||... ..+ .|...+.++.... . .+....... . ...
T Consensus 261 ~~~~~~~~~~~~fG~i~-~~v~~~~li~~g~l~~~~~~~v~---------------~-~~~~~~~~~----~-----~~~ 314 (501)
T PHA02558 261 DGKANILQYVGLFGDIF-KPVTTSQLMEEGQVTDLKINSIF---------------L-RYPDEDRVK----L-----KGE 314 (501)
T ss_pred CccccHHHHHHhhCCce-EEecHHHHHhCCCcCCceEEEEe---------------c-cCCHHHhhh----h-----ccc
Confidence 321 233454211 000 0111111110000 0 000000000 0 000
Q ss_pred hHHHHHHHHHHHhhhcchhhhhhhccccCCCCCcchhhHHHHHHHHHhhcCCCcEEEEcCCHhHHHHHHHHHHcCCCCCC
Q 001817 526 SIASAVEDALEAADFREYSVQTQQSLSCWNPDSIGFNLIEHVLCHIVKKERPGAVLVFMTGWDDINSLKDQLQAHPLLGD 605 (1009)
Q Consensus 526 ~~~~~v~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~~~~i~~l~~~L~~~~~~~~ 605 (1009)
.....+..... +.....++..++..+. ..++++|||+...++++.+++.|...
T Consensus 315 ~~~~~~~~l~~--------------------~~~Rn~~I~~~~~~~~--~~~~~~lV~~~~~~h~~~L~~~L~~~----- 367 (501)
T PHA02558 315 DYQEEIKYITS--------------------HTKRNKWIANLALKLA--KKGENTFVMFKYVEHGKPLYEMLKKV----- 367 (501)
T ss_pred chHHHHHHHhc--------------------cHHHHHHHHHHHHHHH--hcCCCEEEEEEEHHHHHHHHHHHHHc-----
Confidence 00000000000 0001122333333333 23568999999999999999999886
Q ss_pred CCCeEEEEecCCCCHHHHHhhcCCCCCCceEEEEec-CccccccCCCCeeEEEeCCCCccccccCCCCCCcccccccCHH
Q 001817 606 PSRVLLLACHGSMASSEQRLIFDKPEDGVRKIVLAT-NMAETSITINDVVFVIDCGKAKETSYDALNNTPCLLPSWISKA 684 (1009)
Q Consensus 606 ~~~~~v~~lHs~l~~~er~~v~~~f~~G~~kVLVAT-niae~GIdIp~V~~VId~g~~k~~~yd~~~~~~~l~~~~iS~a 684 (1009)
+..+..+||+++.++|..+++.|+.|...||||| +++++|+|+|+++.||....++ |+.
T Consensus 368 --g~~v~~i~G~~~~~eR~~i~~~~~~~~~~vLvaT~~~l~eG~Dip~ld~vIl~~p~~------------------s~~ 427 (501)
T PHA02558 368 --YDKVYYVSGEVDTEDRNEMKKIAEGGKGIIIVASYGVFSTGISIKNLHHVIFAHPSK------------------SKI 427 (501)
T ss_pred --CCCEEEEeCCCCHHHHHHHHHHHhCCCCeEEEEEcceeccccccccccEEEEecCCc------------------chh
Confidence 5569999999999999999999999999999998 8999999999999999866555 777
Q ss_pred hHHhhhcccCCCCCCc
Q 001817 685 AARQRRGRAGRVQPGE 700 (1009)
Q Consensus 685 s~~QR~GRAGR~~~G~ 700 (1009)
.|.||+||+||.++|+
T Consensus 428 ~~~QriGR~~R~~~~K 443 (501)
T PHA02558 428 IVLQSIGRVLRKHGSK 443 (501)
T ss_pred hhhhhhhccccCCCCC
Confidence 8999999999998765
No 72
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=99.95 E-value=1.8e-26 Score=263.72 Aligned_cols=301 Identities=17% Similarity=0.177 Sum_probs=181.0
Q ss_pred HHHHHHHHHcCC--eEEEEecCCCchhhhHHHHHHHHHHHHhcCCceEEEechhHHHHHHHHHHHHHHHhC-------Cc
Q 001817 303 RDALLKAISENQ--VVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERG-------EK 373 (1009)
Q Consensus 303 q~~il~~l~~~~--~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~IvvtqPrR~La~qva~rva~e~~-------~~ 373 (1009)
|.+.++++.+++ +++|+||||||||.++.++++. . ..+.+++.|+++|+.|+++++...+. ..
T Consensus 2 Q~~~~~~~~~~~~~~~~i~apTGsGKT~~~~~~~l~------~--~~~~~~~~P~~aL~~~~~~~~~~~~~~~~~~~~~~ 73 (357)
T TIGR03158 2 QVATFEALQSKDADIIFNTAPTGAGKTLAWLTPLLH------G--ENDTIALYPTNALIEDQTEAIKEFVDVFKPERDVN 73 (357)
T ss_pred HHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHH------c--CCCEEEEeChHHHHHHHHHHHHHHHHhcCCCCCce
Confidence 566777777665 5889999999999999888774 1 12356666999999999999888762 11
Q ss_pred ccceeeeeee----e----------c--------cccCCCcEEEEEccHHHHHHHhc---CC------CCCCccEEEEeC
Q 001817 374 LGESVGYKVR----L----------E--------GMKGRDTRLMFCTTGILLRRLLV---DR------SLRGVTHVIVDE 422 (1009)
Q Consensus 374 ~g~~vGy~vr----~----------e--------~~~~~~t~Iiv~T~g~Ll~~L~~---~~------~l~~is~IIIDE 422 (1009)
+....|-... . + ......+.|+++||+++...+.. .+ .+.++++|||||
T Consensus 74 v~~~~g~~~~d~~~~~~~~~~~~~g~~~~~~~r~~~~~~~p~illT~p~~l~~llr~~~~~~~~~~~~~~~~~~~iV~DE 153 (357)
T TIGR03158 74 LLHVSKATLKDIKEYANDKVGSSKGEKLYNLLRNPIGTSTPIILLTNPDIFVYLTRFAYIDRGDIAAGFYTKFSTVIFDE 153 (357)
T ss_pred EEEecCCchHHHHHhhhhhcccCccchhhhhHHHHHhcCCCCEEEecHHHHHHHHhhhccCcccchhhhhcCCCEEEEec
Confidence 2222221000 0 0 00012467788888888654432 12 368999999999
Q ss_pred CCcCCCcch-HHH---HHHHHHcccCCCCcEEEeccCCCHHHHH---hh-hCCCCeeccCCcccceeeEehhhHH-HHh-
Q 001817 423 IHERGMNED-FLL---IVLKELLPRRPELRLILMSATLNAELFS---SY-FGGAPMLHIPGFTYPVRAYFLENIL-EMT- 492 (1009)
Q Consensus 423 aHeR~~~~d-~ll---~llk~ll~~~~~lkvIlmSATl~~~~~~---~y-f~~~pvi~i~g~~~pv~~~yl~~i~-~~~- 492 (1009)
+|..+.... .++ ..+..+.......++|+||||++..... +. +-+.++..++|+.+.-... +++. ...
T Consensus 154 ~H~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~lSAT~~~~~~~~l~~~~~~~~~~~~v~g~~~~~~~~--~~~~~~~~~ 231 (357)
T TIGR03158 154 FHLYDAKQLVGMLFLLAYMQLIRFFECRRKFVFLSATPDPALILRLQNAKQAGVKIAPIDGEKYQFPDN--PELEADNKT 231 (357)
T ss_pred ccccCcccchhhhhhhHHHHHHHhhhcCCcEEEEecCCCHHHHHHHHhccccCceeeeecCcccccCCC--hhhhccccc
Confidence 998654322 222 2232222222347999999999765322 22 1245677777773321000 0000 000
Q ss_pred -hhccC-cccccccchhhhHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhcchhhhhhhccccCCCCCcchhhH---HHH
Q 001817 493 -RYRLN-TYNQIDDYGQEKSWKMQKQALALRKRKSSIASAVEDALEAADFREYSVQTQQSLSCWNPDSIGFNLI---EHV 567 (1009)
Q Consensus 493 -~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li---~~l 567 (1009)
++... +..... +... .....+.+ ...
T Consensus 232 ~~~~~~~~~i~~~-~~~~------------------------------------------------~~~~~~~l~~l~~~ 262 (357)
T TIGR03158 232 QSFRPVLPPVELE-LIPA------------------------------------------------PDFKEEELSELAEE 262 (357)
T ss_pred cccceeccceEEE-EEeC------------------------------------------------CchhHHHHHHHHHH
Confidence 00000 000000 0000 00000011 111
Q ss_pred HHHHHhhcCCCcEEEEcCCHhHHHHHHHHHHcCCCCCCCCCeEEEEecCCCCHHHHHhhcCCCCCCceEEEEecCccccc
Q 001817 568 LCHIVKKERPGAVLVFMTGWDDINSLKDQLQAHPLLGDPSRVLLLACHGSMASSEQRLIFDKPEDGVRKIVLATNMAETS 647 (1009)
Q Consensus 568 l~~i~~~~~~g~iLVFl~~~~~i~~l~~~L~~~~~~~~~~~~~v~~lHs~l~~~er~~v~~~f~~G~~kVLVATniae~G 647 (1009)
+....+....+++||||+++..++.+++.|+... .++.+..+||.+++.+|.++. +..|||||+++|+|
T Consensus 263 i~~~~~~~~~~k~LIf~nt~~~~~~l~~~L~~~~-----~~~~~~~l~g~~~~~~R~~~~------~~~iLVaTdv~~rG 331 (357)
T TIGR03158 263 VIERFRQLPGERGAIILDSLDEVNRLSDLLQQQG-----LGDDIGRITGFAPKKDRERAM------QFDILLGTSTVDVG 331 (357)
T ss_pred HHHHHhccCCCeEEEEECCHHHHHHHHHHHhhhC-----CCceEEeeecCCCHHHHHHhc------cCCEEEEecHHhcc
Confidence 2222333456799999999999999999998641 134678899999999987653 67899999999999
Q ss_pred cCCCCeeEEEeCCCCccccccCCCCCCcccccccCHHhHHhhhcccC
Q 001817 648 ITINDVVFVIDCGKAKETSYDALNNTPCLLPSWISKAAARQRRGRAG 694 (1009)
Q Consensus 648 IdIp~V~~VId~g~~k~~~yd~~~~~~~l~~~~iS~as~~QR~GRAG 694 (1009)
||||++ +||. . |. +..+|+||+||+|
T Consensus 332 iDi~~~-~vi~-~-p~------------------~~~~yiqR~GR~g 357 (357)
T TIGR03158 332 VDFKRD-WLIF-S-AR------------------DAAAFWQRLGRLG 357 (357)
T ss_pred cCCCCc-eEEE-C-CC------------------CHHHHhhhcccCC
Confidence 999987 4552 2 33 6789999999998
No 73
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=99.95 E-value=2.5e-27 Score=283.40 Aligned_cols=336 Identities=19% Similarity=0.281 Sum_probs=231.3
Q ss_pred HHHHhcChhhHHHHHhhc----CCCCHHHHHHHHHHHHcCCeEEEEecCCCchhhhHHHHHHHHHHHH---hcCCceEEE
Q 001817 278 QQAWQESPEGQKMLEFRR----SLPSYKERDALLKAISENQVVVVSGETGCGKTTQLPQYILESETEA---ARGAACSII 350 (1009)
Q Consensus 278 ~~~~~~~~~~~~l~~~r~----~LPi~~~q~~il~~l~~~~~vII~apTGSGKTt~~~~~ile~~~~~---~~~~~~~Iv 350 (1009)
...|.+.+....++..-+ .-|..+ |.+.+++|..+++||.+|.||||||..+.++++.+.... ..+.++..+
T Consensus 364 v~sW~q~gl~~~il~tlkkl~y~k~~~I-Q~qAiP~ImsGrdvIgvakTgSGKT~af~LPmirhi~dQr~~~~gdGPi~l 442 (997)
T KOG0334|consen 364 VTSWTQCGLSSKILETLKKLGYEKPTPI-QAQAIPAIMSGRDVIGVAKTGSGKTLAFLLPMIRHIKDQRPLEEGDGPIAL 442 (997)
T ss_pred cchHhhCCchHHHHHHHHHhcCCCCcch-hhhhcchhccCcceEEeeccCCccchhhhcchhhhhhcCCChhhCCCceEE
Confidence 356888776655655542 334444 455667788999999999999999999999988666432 134456666
Q ss_pred echhHHHHHHHHHHHHHHHhCCcccce----ee-eeeee-ccccCCCcEEEEEccHHHHHHHhcCC----CCCCccEEEE
Q 001817 351 CTQPRRISAMAVSERVAAERGEKLGES----VG-YKVRL-EGMKGRDTRLMFCTTGILLRRLLVDR----SLRGVTHVIV 420 (1009)
Q Consensus 351 vtqPrR~La~qva~rva~e~~~~~g~~----vG-y~vr~-e~~~~~~t~Iiv~T~g~Ll~~L~~~~----~l~~is~III 420 (1009)
++.|||+||.|+.+.+..+... ++.. +| ..+.. -......+.|+|||||+.++.+..+. .+.++.++|+
T Consensus 443 i~aPtrela~QI~r~~~kf~k~-l~ir~v~vygg~~~~~qiaelkRg~eIvV~tpGRmiD~l~~n~grvtnlrR~t~lv~ 521 (997)
T KOG0334|consen 443 ILAPTRELAMQIHREVRKFLKL-LGIRVVCVYGGSGISQQIAELKRGAEIVVCTPGRMIDILCANSGRVTNLRRVTYLVL 521 (997)
T ss_pred EEcCCHHHHHHHHHHHHHHHhh-cCceEEEecCCccHHHHHHHHhcCCceEEeccchhhhhHhhcCCccccccccceeee
Confidence 6779999999999988776532 3322 22 11100 01122458999999999999886554 5777779999
Q ss_pred eCCCcCCCcchHHHHHHHHHcccCCCCcEEEeccCCCHH--HHHhhhCCCCeeccC-CcccceeeEehhhHHHHhhhccC
Q 001817 421 DEIHERGMNEDFLLIVLKELLPRRPELRLILMSATLNAE--LFSSYFGGAPMLHIP-GFTYPVRAYFLENILEMTRYRLN 497 (1009)
Q Consensus 421 DEaHeR~~~~d~ll~llk~ll~~~~~lkvIlmSATl~~~--~~~~yf~~~pvi~i~-g~~~pv~~~yl~~i~~~~~~~~~ 497 (1009)
||++ |..+..|.....+.+-..+|+.|.+++|||.+.. .++.-.-..|+..+- |+. .+..++
T Consensus 522 deaD-rmfdmgfePq~~~Ii~nlrpdrQtvlfSatfpr~m~~la~~vl~~Pveiiv~~~s-----vV~k~V--------- 586 (997)
T KOG0334|consen 522 DEAD-RMFDMGFEPQITRILQNLRPDRQTVLFSATFPRSMEALARKVLKKPVEIIVGGRS-----VVCKEV--------- 586 (997)
T ss_pred chhh-hhheeccCcccchHHhhcchhhhhhhhhhhhhHHHHHHHHHhhcCCeeEEEccce-----eEeccc---------
Confidence 9999 4345555555555555568999999999999654 222221123322111 110 000000
Q ss_pred cccccccchhhhHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhcchhhhhhhccccCCCCCcchhhHHHHHHHHHhhcCC
Q 001817 498 TYNQIDDYGQEKSWKMQKQALALRKRKSSIASAVEDALEAADFREYSVQTQQSLSCWNPDSIGFNLIEHVLCHIVKKERP 577 (1009)
Q Consensus 498 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~~~~ 577 (1009)
.+.+ . .. .+....+..++.-+-.....
T Consensus 587 ----------------------------------~q~v----------------~-V~--~~e~eKf~kL~eLl~e~~e~ 613 (997)
T KOG0334|consen 587 ----------------------------------TQVV----------------R-VC--AIENEKFLKLLELLGERYED 613 (997)
T ss_pred ----------------------------------eEEE----------------E-Ee--cCchHHHHHHHHHHHHHhhc
Confidence 0000 0 00 00011122333333334458
Q ss_pred CcEEEEcCCHhHHHHHHHHHHcCCCCCCCCCeEEEEecCCCCHHHHHhhcCCCCCCceEEEEecCccccccCCCCeeEEE
Q 001817 578 GAVLVFMTGWDDINSLKDQLQAHPLLGDPSRVLLLACHGSMASSEQRLIFDKPEDGVRKIVLATNMAETSITINDVVFVI 657 (1009)
Q Consensus 578 g~iLVFl~~~~~i~~l~~~L~~~~~~~~~~~~~v~~lHs~l~~~er~~v~~~f~~G~~kVLVATniae~GIdIp~V~~VI 657 (1009)
+++||||...+.+..|.+.|.+. ++.+..+||+.++.+|..+++.|++|..++||||+++++|+|+.++..||
T Consensus 614 ~~tiiFv~~qe~~d~l~~~L~~a-------g~~~~slHGgv~q~dR~sti~dfK~~~~~LLvaTsvvarGLdv~~l~Lvv 686 (997)
T KOG0334|consen 614 GKTIIFVDKQEKADALLRDLQKA-------GYNCDSLHGGVDQHDRSSTIEDFKNGVVNLLVATSVVARGLDVKELILVV 686 (997)
T ss_pred CCEEEEEcCchHHHHHHHHHHhc-------CcchhhhcCCCchHHHHhHHHHHhccCceEEEehhhhhcccccccceEEE
Confidence 99999999999999999999976 66677799999999999999999999999999999999999999999999
Q ss_pred eCCCCccccccCCCCCCcccccccCHHhHHhhhcccCCCCC-CcEEEecchh
Q 001817 658 DCGKAKETSYDALNNTPCLLPSWISKAAARQRRGRAGRVQP-GECYHLYPRY 708 (1009)
Q Consensus 658 d~g~~k~~~yd~~~~~~~l~~~~iS~as~~QR~GRAGR~~~-G~c~~Lys~~ 708 (1009)
++++|. . .+.|.||.||+||+++ |.||.+.+++
T Consensus 687 nyd~pn--------h----------~edyvhR~gRTgragrkg~AvtFi~p~ 720 (997)
T KOG0334|consen 687 NYDFPN--------H----------YEDYVHRVGRTGRAGRKGAAVTFITPD 720 (997)
T ss_pred Ecccch--------h----------HHHHHHHhcccccCCccceeEEEeChH
Confidence 966664 2 2358899999999965 9999998773
No 74
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.95 E-value=3.4e-26 Score=273.02 Aligned_cols=430 Identities=20% Similarity=0.197 Sum_probs=268.0
Q ss_pred HHHHHHH-HHcCCeEEEEecCCCchhhhHHHHHHHHHHHHhc------CCceEEEechhHHHHHHHHHHHHHHHh---CC
Q 001817 303 RDALLKA-ISENQVVVVSGETGCGKTTQLPQYILESETEAAR------GAACSIICTQPRRISAMAVSERVAAER---GE 372 (1009)
Q Consensus 303 q~~il~~-l~~~~~vII~apTGSGKTt~~~~~ile~~~~~~~------~~~~~IvvtqPrR~La~qva~rva~e~---~~ 372 (1009)
|..+.++ +....++++|||||+|||-.+.+-+++.+-.+.+ -...+|++++|.++|+..+...+++.+ |.
T Consensus 314 QS~v~daAl~~~EnmLlCAPTGaGKTNVAvLtiLqel~~h~r~dgs~nl~~fKIVYIAPmKaLvqE~VgsfSkRla~~GI 393 (1674)
T KOG0951|consen 314 QSKVYDAALRGDENMLLCAPTGAGKTNVAVLTILQELGNHLREDGSVNLAPFKIVYIAPMKALVQEMVGSFSKRLAPLGI 393 (1674)
T ss_pred HHHHHHHHhcCcCcEEEeccCCCCchHHHHHHHHHHHhcccccccceecccceEEEEeeHHHHHHHHHHHHHhhccccCc
Confidence 4444444 3456899999999999999999999998754332 123489999999999999998887765 44
Q ss_pred cccceeeeeeeeccccCCCcEEEEEccHHHHHHHhcC----CCCCCccEEEEeCCC----cCCCcchHH-HHHHHHHccc
Q 001817 373 KLGESVGYKVRLEGMKGRDTRLMFCTTGILLRRLLVD----RSLRGVTHVIVDEIH----ERGMNEDFL-LIVLKELLPR 443 (1009)
Q Consensus 373 ~~g~~vGy~vr~e~~~~~~t~Iiv~T~g~Ll~~L~~~----~~l~~is~IIIDEaH----eR~~~~d~l-l~llk~ll~~ 443 (1009)
.++...|-.. .....-..|+|++|||+.. +.+.++ ...+-++++||||+| .||.-.+-. ....++....
T Consensus 394 ~V~ElTgD~~-l~~~qieeTqVIV~TPEK~-DiITRk~gdraY~qlvrLlIIDEIHLLhDdRGpvLESIVaRt~r~ses~ 471 (1674)
T KOG0951|consen 394 TVLELTGDSQ-LGKEQIEETQVIVTTPEKW-DIITRKSGDRAYEQLVRLLIIDEIHLLHDDRGPVLESIVARTFRRSEST 471 (1674)
T ss_pred EEEEeccccc-chhhhhhcceeEEeccchh-hhhhcccCchhHHHHHHHHhhhhhhhcccccchHHHHHHHHHHHHhhhc
Confidence 4444444211 1122236799999999864 222222 245578999999998 355443322 2223333334
Q ss_pred CCCCcEEEeccCC-CHHHHHhhhCCCC----eeccCCcccceeeEehhhHHHHhhhccCcccccccchhhhHHHHHHHHH
Q 001817 444 RPELRLILMSATL-NAELFSSYFGGAP----MLHIPGFTYPVRAYFLENILEMTRYRLNTYNQIDDYGQEKSWKMQKQAL 518 (1009)
Q Consensus 444 ~~~lkvIlmSATl-~~~~~~~yf~~~p----vi~i~g~~~pv~~~yl~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 518 (1009)
....+++++|||+ |-++++.|+...+ .+.-..|..|.+..|.-- + +
T Consensus 472 ~e~~RlVGLSATLPNy~DV~~Fl~v~~~glf~fd~syRpvPL~qq~Igi----~--------------e----------- 522 (1674)
T KOG0951|consen 472 EEGSRLVGLSATLPNYEDVASFLRVDPEGLFYFDSSYRPVPLKQQYIGI----T--------------E----------- 522 (1674)
T ss_pred ccCceeeeecccCCchhhhHHHhccCcccccccCcccCcCCccceEecc----c--------------c-----------
Confidence 5678999999999 8888888876433 122233444554444310 0 0
Q ss_pred HHHhhhhhHHHHHHHHHHHhhhcchhhhhhhccccCCCCCcchhhHHHHHHHHHhhcCCCcEEEEcCCHhHHHHHHHHHH
Q 001817 519 ALRKRKSSIASAVEDALEAADFREYSVQTQQSLSCWNPDSIGFNLIEHVLCHIVKKERPGAVLVFMTGWDDINSLKDQLQ 598 (1009)
Q Consensus 519 ~~~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~~~~i~~l~~~L~ 598 (1009)
++.... . ++. .......+++....+++|||+.++++..+.|+.++
T Consensus 523 --k~~~~~-~----qam----------------------------Ne~~yeKVm~~agk~qVLVFVHsRkET~ktA~aIR 567 (1674)
T KOG0951|consen 523 --KKPLKR-F----QAM----------------------------NEACYEKVLEHAGKNQVLVFVHSRKETAKTARAIR 567 (1674)
T ss_pred --CCchHH-H----HHH----------------------------HHHHHHHHHHhCCCCcEEEEEEechHHHHHHHHHH
Confidence 000000 0 000 01123344555567899999999999988888877
Q ss_pred cCCC------------------------------CCCCCCeEEEEecCCCCHHHHHhhcCCCCCCceEEEEecCcccccc
Q 001817 599 AHPL------------------------------LGDPSRVLLLACHGSMASSEQRLIFDKPEDGVRKIVLATNMAETSI 648 (1009)
Q Consensus 599 ~~~~------------------------------~~~~~~~~v~~lHs~l~~~er~~v~~~f~~G~~kVLVATniae~GI 648 (1009)
.... +.+...+.++.||+||+..+|..+++.|+.|.++|+++|.++++|+
T Consensus 568 d~~le~dtls~fmre~s~s~eilrtea~~~kn~dLkdLLpygfaIHhAGl~R~dR~~~EdLf~~g~iqvlvstatlawgv 647 (1674)
T KOG0951|consen 568 DKALEEDTLSRFMREDSASREILRTEAGQAKNPDLKDLLPYGFAIHHAGLNRKDRELVEDLFADGHIQVLVSTATLAWGV 647 (1674)
T ss_pred HHHhhhhHHHHHHhcccchhhhhhhhhhcccChhHHHHhhccceeeccCCCcchHHHHHHHHhcCceeEEEeehhhhhhc
Confidence 3110 1222356789999999999999999999999999999999999999
Q ss_pred CCCCeeEEEeCCCCccccccCCCCCCcccccccCHHhHHhhhcccCCCCC-----CcEEEecchhhhh-hhccCCCc--c
Q 001817 649 TINDVVFVIDCGKAKETSYDALNNTPCLLPSWISKAAARQRRGRAGRVQP-----GECYHLYPRYVYD-AFADYQLP--E 720 (1009)
Q Consensus 649 dIp~V~~VId~g~~k~~~yd~~~~~~~l~~~~iS~as~~QR~GRAGR~~~-----G~c~~Lys~~~~~-~l~~~~~P--E 720 (1009)
|+|+-+++|- ....||+..|.-. .+|+.+.+||.|||||.+. |+...=+++-.|. .+...+.| +
T Consensus 648 nlpahtViik----gtqvy~pekg~w~----elsp~dv~qmlgragrp~~D~~gegiiit~~se~qyyls~mn~qLpies 719 (1674)
T KOG0951|consen 648 NLPAHTVIIK----GTQVYDPEKGRWT----ELSPLDVMQMLGRAGRPQYDTCGEGIIITDHSELQYYLSLMNQQLPIES 719 (1674)
T ss_pred CCCcceEEec----CccccCcccCccc----cCCHHHHHHHHhhcCCCccCcCCceeeccCchHhhhhHHhhhhcCCChH
Confidence 9999998885 4456999887543 3599999999999999953 3322223333332 22222222 2
Q ss_pred ccccCchhhhhHhhhcCcCC---HHHHHH------hhcCCCCh-----------------hhHHHHHHHHHHhccccCC-
Q 001817 721 LLRTPLQSLCLQIKSLQLGS---ISEFLS------RALQPPEP-----------------LSVKNAIEYLQIIGALDEN- 773 (1009)
Q Consensus 721 i~r~~L~~~~L~lk~l~~~~---~~~fl~------~~l~pP~~-----------------~~v~~al~~L~~lgald~~- 773 (1009)
-.-..|.+-+-.-+.+|+.+ ..+++. +.+..|.. +.++.|.-.|.+.|.|--+
T Consensus 720 q~~~rl~d~lnaeiv~Gv~~~~d~~~wl~yTylyvRm~~~p~ly~~~~~~~d~~le~~r~~lvhsa~~ll~~~~li~yd~ 799 (1674)
T KOG0951|consen 720 QFVSRLADCLNAEIVLGVRSARDAVDWLGYTYLYVRMVRNPTLYGVSPEASDRLLEQRRADLVHSAATLLDKAGLIKYDR 799 (1674)
T ss_pred HHHHHhhhhhhhhhhcchhhHHHHHhhhcceeeEEeeccCchhccCCcccchHHHHHHHhhhHHHHHhhHhhcCcccccc
Confidence 22122222111112333322 222321 11111211 3567788888888887432
Q ss_pred --C--CcChhhhhcccCCCChhHHHHHHHhhhhCCcc
Q 001817 774 --E--NLTVLGRNLSMLPVEPKLGKMLILGAIFNCLD 806 (1009)
Q Consensus 774 --~--~lT~lG~~ls~lpl~p~~~k~ll~~~~~~c~~ 806 (1009)
| ..|.+|+..+.+.+.-......-....-.|.+
T Consensus 800 ~s~~~~~telg~ias~yyi~~~s~~~yn~~L~~~~~~ 836 (1674)
T KOG0951|consen 800 KSGAIQATELGRIASSYYITHGSMATYNELLKETMSE 836 (1674)
T ss_pred ccCcccchhhccccceeeeecchHHHHHhhhhhhhcc
Confidence 2 58999999999998766554443333333443
No 75
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=99.94 E-value=1.7e-28 Score=284.24 Aligned_cols=572 Identities=8% Similarity=-0.184 Sum_probs=436.9
Q ss_pred hhhHHHHHhhcCCCCHHHHHHHHHHHHcCCeEEEEecCCCchhhhHHHHHHHHHHHHhcCCceEEEechhHHHHHHHHHH
Q 001817 285 PEGQKMLEFRRSLPSYKERDALLKAISENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSE 364 (1009)
Q Consensus 285 ~~~~~l~~~r~~LPi~~~q~~il~~l~~~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~IvvtqPrR~La~qva~ 364 (1009)
.....+...+.-+|+.+..+.|++++..|.++++-+.||||||++.++.+++.........-|.++.++||++.|...+.
T Consensus 393 n~v~~I~getgcgk~tq~aq~iLe~~~~ns~g~~~na~v~qprrisaisiaerva~er~e~~g~tvgy~vRf~Sa~prpy 472 (1282)
T KOG0921|consen 393 NRVVIIKGETGCGKSTQVAQFLLESFLENSNGASFNAVVSQPRRISAISLAERVANERGEEVGETCGYNVRFDSATPRPY 472 (1282)
T ss_pred CceeeEeecccccchhHHHHHHHHHHhhccccccccceeccccccchHHHHHHHHHhhHHhhcccccccccccccccccc
Confidence 33444555666789999999999999999999999999999999999999999988777778899999999999999999
Q ss_pred HHHHHhCCcccceeeeeeeecccc-CCCcEEEEEccHHHHHHHhcCCCCCCccEEEEeCCCcCCCcchHHHHHHHHHccc
Q 001817 365 RVAAERGEKLGESVGYKVRLEGMK-GRDTRLMFCTTGILLRRLLVDRSLRGVTHVIVDEIHERGMNEDFLLIVLKELLPR 443 (1009)
Q Consensus 365 rva~e~~~~~g~~vGy~vr~e~~~-~~~t~Iiv~T~g~Ll~~L~~~~~l~~is~IIIDEaHeR~~~~d~ll~llk~ll~~ 443 (1009)
++.-++++.++...+|..+.+... ..+.-+-+||.+.++..+..+ +....+.+.||.|++++++|++..++..+
T Consensus 473 g~i~fctvgvllr~~e~glrg~sh~i~deiherdv~~dfll~~lr~--m~~ty~dl~v~lmsatIdTd~f~~~f~~~--- 547 (1282)
T KOG0921|consen 473 GSIMFCTVGVLLRMMENGLRGISHVIIDEIHERDVDTDFVLIVLRE--MISTYRDLRVVLMSATIDTDLFTNFFSSI--- 547 (1282)
T ss_pred cceeeeccchhhhhhhhcccccccccchhhhhhccchHHHHHHHHh--hhccchhhhhhhhhcccchhhhhhhhccc---
Confidence 999888888888888887766433 345567799999999888765 55677889999999999999988877664
Q ss_pred CCCCcEEEeccCCCHHHHHhhhCCCCeeccCCcccceeeEehhhHHHHhh-hccCcccccccchhhhHHHHHHHHHHHHh
Q 001817 444 RPELRLILMSATLNAELFSSYFGGAPMLHIPGFTYPVRAYFLENILEMTR-YRLNTYNQIDDYGQEKSWKMQKQALALRK 522 (1009)
Q Consensus 444 ~~~lkvIlmSATl~~~~~~~yf~~~pvi~i~g~~~pv~~~yl~~i~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 522 (1009)
| ++.++++|++...|..++-.++...++++.++++.++.++-.+... .+-..++...+. ..............
T Consensus 548 -p--~~~~~grt~pvq~F~led~~~~~~~vp~~~~~~k~k~~~~~~~~~~ddK~~n~n~~~dd---~~~~~~~~am~~~s 621 (1282)
T KOG0921|consen 548 -P--DVTVHGRTFPVQSFFLEDIIQMTQFVPSEPSQKKRKKDDDEEDEEVDDKGRNMNILCDP---SYNESTRTAMSRLS 621 (1282)
T ss_pred -c--ceeeccccccHHHHHHHHhhhhhhccCCCcCccchhhcccccCchhhhcccccccccCh---hhcchhhhhhhcch
Confidence 3 3599999999999999888999999999999998887544211110 000011111100 00000000000000
Q ss_pred hhhhHHHHHHHHHHHhhhcchhhhhhhccccCCCCCcchhhHHHHHHHHHhhcCCCcEEEEcCCHhHHHHHHHHHHcCCC
Q 001817 523 RKSSIASAVEDALEAADFREYSVQTQQSLSCWNPDSIGFNLIEHVLCHIVKKERPGAVLVFMTGWDDINSLKDQLQAHPL 602 (1009)
Q Consensus 523 ~~~~~~~~v~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~~~~i~~l~~~L~~~~~ 602 (1009)
........++..+.. .+...+...++.-.+++..|+|++++-.+......+...+.
T Consensus 622 e~d~~f~l~Eal~~~------------------------i~s~~i~gailvflpgwa~i~~L~~~ll~~~~fg~~~~y~i 677 (1282)
T KOG0921|consen 622 EKDIPFGLIEALLND------------------------IASRNIDGAVLVFLPGWAEIMTLCNRLLEHQEFGQANKYEI 677 (1282)
T ss_pred hhcchhHHHHHHHhh------------------------hcccCCccceeeecCchHHhhhhhhhhhhhhhhccchhccc
Confidence 000011111111111 01111223333345778999999999988888877777666
Q ss_pred CCCCCCeEEEEecCCCCHHHHHhhcCCCCCCceEEEEecCccccccCCCCeeEEEeCCCCccccccCCCCCCcccccccC
Q 001817 603 LGDPSRVLLLACHGSMASSEQRLIFDKPEDGVRKIVLATNMAETSITINDVVFVIDCGKAKETSYDALNNTPCLLPSWIS 682 (1009)
Q Consensus 603 ~~~~~~~~v~~lHs~l~~~er~~v~~~f~~G~~kVLVATniae~GIdIp~V~~VId~g~~k~~~yd~~~~~~~l~~~~iS 682 (1009)
++. ....+...|..+...+++.+++....+.+++...|+..++.|.+-++.+|++++..+.+.+-+...++.+.++|-+
T Consensus 678 lp~-Hsq~~~~eqrkvf~~~p~gv~kii~stniaetsiTidd~v~vid~cka~~~~~~s~nn~~~~Atvw~sktn~eqr~ 756 (1282)
T KOG0921|consen 678 LPL-HSQLTSQEQRKVFEPVPEGVTKIILSTNIAETSITIDDVVYVIDSCKAKEKLFTSHNNMTHYATVWASKTNLEQRK 756 (1282)
T ss_pred ccc-hhhcccHhhhhccCcccccccccccccceeeEeeeecceeEEEeeeeeeeeeeccccceeeeeeecccccchHhhc
Confidence 553 2455778899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhHHhhhcccCCCCCCcEEEecchhhhhhhccCCCccccccCchhhhhHhhhcCcCCHHHHHHhhcCCCChhhHHHHHH
Q 001817 683 KAAARQRRGRAGRVQPGECYHLYPRYVYDAFADYQLPELLRTPLQSLCLQIKSLQLGSISEFLSRALQPPEPLSVKNAIE 762 (1009)
Q Consensus 683 ~as~~QR~GRAGR~~~G~c~~Lys~~~~~~l~~~~~PEi~r~~L~~~~L~lk~l~~~~~~~fl~~~l~pP~~~~v~~al~ 762 (1009)
...-.||.|||+|...+.||.+++...+..|..++.|||.++......+.++.+-...+..++.+++.+|+....+.+.-
T Consensus 757 gr~grvR~G~~f~lcs~arF~~l~~~~t~em~r~plhemalTikll~l~SI~~fl~kal~~~p~dav~e~e~~l~~m~~l 836 (1282)
T KOG0921|consen 757 GRAGRVRPGFCFHLCSRARFEALEDHGTAEMFRTPLHEIALTIKLLRLGSIGEFLGKALQPPPYDAVIEAEAVLREMGAL 836 (1282)
T ss_pred ccCceecccccccccHHHHHHHHHhcCcHhhhcCccHHHHhhHHHHHhhhHHHHHhhccCCCchhhccCchHHHHHhhhh
Confidence 99999999999999999999999999999999999999999998888888877766677777778888887766655544
Q ss_pred HHHHhccccCCCCcChhhhhcccCCCChhHHHHHHHhhhhCCcchHHHHHHhhcCCCccccCcChHHHHHHHHhhhccCC
Q 001817 763 YLQIIGALDENENLTVLGRNLSMLPVEPKLGKMLILGAIFNCLDPVMTVVAGLSVRDPFLMPFDKKDLAESAKAQFSARD 842 (1009)
Q Consensus 763 ~L~~lgald~~~~lT~lG~~ls~lpl~p~~~k~ll~~~~~~c~~~~l~i~a~ls~~~~f~~p~~~~~~~~~~~~~f~~~~ 842 (1009)
.+...-+.+..-.+|.+++.....|+.+..|++...++.+-..+...+++++--.+.+|.....++ .-+..+|+++-
T Consensus 837 d~n~elt~lg~~la~l~iep~~~k~~~lg~~~g~~~~m~~~as~~s~~~~~~~~~~~~~rl~g~q~---~~~g~kfsdhv 913 (1282)
T KOG0921|consen 837 DANDELTPLGRMLARLPIEPRIGKMMILGTALGAGSVMCDVASAMSFPTPFVPREKHHSRLSGTQR---KFAGNKFSDHV 913 (1282)
T ss_pred hccCcccchhhhhhhccCcccccceeeechhhccchhhhhhhcccccccccccccccccccccchh---hccccccccch
Confidence 444444444445589999999999999999999888777665666666655544455665433222 24567899999
Q ss_pred hhhHHHHHHHHHHHHHHhhc-ccchhhHHHhcCCHHHHHHHHHHHHHHHHHHHHc
Q 001817 843 YSDHLALVRAYDGWKDAERH-QSGYEYCWKNFLSAQTLKAIDSLRKQFLFLLKDA 896 (1009)
Q Consensus 843 ~sDhl~~l~~f~~w~~~~~~-~~~~~~c~~~~l~~~~l~~~~~~r~ql~~~l~~~ 896 (1009)
.+||.+.+..|+.|..+... .....||..+-++..++.+-+++..||. ++...
T Consensus 914 a~~~v~q~~r~~~q~ga~~e~efc~r~~l~~~~~~~t~~a~~ql~d~L~-q~~fp 967 (1282)
T KOG0921|consen 914 AIVSVIQGYREAVQMGAAAEREFCERYSLSNPVLKMTDGARRQLIDVLR-QCSFP 967 (1282)
T ss_pred hhhhhhhhhHHHhhhhhhhhhhHhHhhhhcchhhhhhhhhHHHHHHHHH-hccCc
Confidence 99999999999999977643 3456899999999999999999999988 65443
No 76
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=99.94 E-value=6.2e-26 Score=280.92 Aligned_cols=333 Identities=23% Similarity=0.243 Sum_probs=223.6
Q ss_pred hcCCCCHHHHHHHHHHHHcCCeEEEEecCCCchhhhHHHHHHHHHHHHhcCCceEEEechhHHHHHHHHHHHHHHHhCCc
Q 001817 294 RRSLPSYKERDALLKAISENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERGEK 373 (1009)
Q Consensus 294 r~~LPi~~~q~~il~~l~~~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~IvvtqPrR~La~qva~rva~e~~~~ 373 (1009)
+.....|.+|.+.++.+.+++++||+.+||||||.++.++|++.++.... .+.+++-||++||+...+++.+.....
T Consensus 66 ~g~~~lY~HQ~~A~~~~~~G~~vvVtTgTgSGKTe~FllPIld~~l~~~~---a~AL~lYPtnALa~DQ~~rl~~~~~~~ 142 (851)
T COG1205 66 AGIERLYSHQVDALRLIREGRNVVVTTGTGSGKTESFLLPILDHLLRDPS---ARALLLYPTNALANDQAERLRELISDL 142 (851)
T ss_pred hccccccHHHHHHHHHHHCCCCEEEECCCCCchhHHHHHHHHHHHhhCcC---ccEEEEechhhhHhhHHHHHHHHHHhC
Confidence 34455999999999999999999999999999999999999999986433 344445599999999999998876433
Q ss_pred ccceeeeee-----eecc---ccCCCcEEEEEccHHHHHHHhcCC-----CCCCccEEEEeCCCc-CCCcchHHHHHHHH
Q 001817 374 LGESVGYKV-----RLEG---MKGRDTRLMFCTTGILLRRLLVDR-----SLRGVTHVIVDEIHE-RGMNEDFLLIVLKE 439 (1009)
Q Consensus 374 ~g~~vGy~v-----r~e~---~~~~~t~Iiv~T~g~Ll~~L~~~~-----~l~~is~IIIDEaHe-R~~~~d~ll~llk~ 439 (1009)
.+ .++..+ ..+. .....++|++++|.||-..++... .++++++||+||+|- ||....-+..++++
T Consensus 143 ~~-~v~~~~y~Gdt~~~~r~~~~~~pp~IllTNpdMLh~~llr~~~~~~~~~~~Lk~lVvDElHtYrGv~GS~vA~llRR 221 (851)
T COG1205 143 PG-KVTFGRYTGDTPPEERRAIIRNPPDILLTNPDMLHYLLLRNHDAWLWLLRNLKYLVVDELHTYRGVQGSEVALLLRR 221 (851)
T ss_pred CC-cceeeeecCCCChHHHHHHHhCCCCEEEeCHHHHHHHhccCcchHHHHHhcCcEEEEecceeccccchhHHHHHHHH
Confidence 21 222111 1111 124678999999999988666543 578899999999995 66666555555666
Q ss_pred HcccC----CCCcEEEeccCC-CHHHH-HhhhCCCCeeccCCcccceeeEehhhHHHHhhhccCcccccccchhhhHHHH
Q 001817 440 LLPRR----PELRLILMSATL-NAELF-SSYFGGAPMLHIPGFTYPVRAYFLENILEMTRYRLNTYNQIDDYGQEKSWKM 513 (1009)
Q Consensus 440 ll~~~----~~lkvIlmSATl-~~~~~-~~yf~~~pvi~i~g~~~pv~~~yl~~i~~~~~~~~~~~~~i~~~~~~~~~~~ 513 (1009)
++... .++++|.+|||+ |+..+ .++++..-...+.+...|-...+..- ..++.... +.
T Consensus 222 L~~~~~~~~~~~q~i~~SAT~~np~e~~~~l~~~~f~~~v~~~g~~~~~~~~~~--------~~p~~~~~-------~~- 285 (851)
T COG1205 222 LLRRLRRYGSPLQIICTSATLANPGEFAEELFGRDFEVPVDEDGSPRGLRYFVR--------REPPIREL-------AE- 285 (851)
T ss_pred HHHHHhccCCCceEEEEeccccChHHHHHHhcCCcceeeccCCCCCCCceEEEE--------eCCcchhh-------hh-
Confidence 55432 378999999999 55544 45655321111333333322111100 00000000 00
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHhhhcchhhhhhhccccCCCCCcchhhHHHHHHHHHhhcCCCcEEEEcCCHhHHHHH
Q 001817 514 QKQALALRKRKSSIASAVEDALEAADFREYSVQTQQSLSCWNPDSIGFNLIEHVLCHIVKKERPGAVLVFMTGWDDINSL 593 (1009)
Q Consensus 514 ~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~~~~i~~l 593 (1009)
....... .....++..... +.-++|||+.++..++.+
T Consensus 286 --------~~r~s~~---------------------------------~~~~~~~~~~~~--~~~~tL~F~~sr~~~e~~ 322 (851)
T COG1205 286 --------SIRRSAL---------------------------------AELATLAALLVR--NGIQTLVFFRSRKQVELL 322 (851)
T ss_pred --------hcccchH---------------------------------HHHHHHHHHHHH--cCceEEEEEehhhhhhhh
Confidence 0000000 001111122222 346899999999999998
Q ss_pred HHHHHcCCC-CCCCCCeEEEEecCCCCHHHHHhhcCCCCCCceEEEEecCccccccCCCCeeEEEeCCCCccccccCCCC
Q 001817 594 KDQLQAHPL-LGDPSRVLLLACHGSMASSEQRLIFDKPEDGVRKIVLATNMAETSITINDVVFVIDCGKAKETSYDALNN 672 (1009)
Q Consensus 594 ~~~L~~~~~-~~~~~~~~v~~lHs~l~~~er~~v~~~f~~G~~kVLVATniae~GIdIp~V~~VId~g~~k~~~yd~~~~ 672 (1009)
......... .+......+..++|+++.++|.+++..|+.|+.+++++||.+|-||||.++..||.+|.|.
T Consensus 323 ~~~~~~~~~~~~~~l~~~v~~~~~~~~~~er~~ie~~~~~g~~~~~~st~AlelgidiG~ldavi~~g~P~--------- 393 (851)
T COG1205 323 YLSPRRRLVREGGKLLDAVSTYRAGLHREERRRIEAEFKEGELLGVIATNALELGIDIGSLDAVIAYGYPG--------- 393 (851)
T ss_pred hhchhHHHhhcchhhhhheeeccccCCHHHHHHHHHHHhcCCccEEecchhhhhceeehhhhhHhhcCCCC---------
Confidence 733322111 1101124588999999999999999999999999999999999999999999999999986
Q ss_pred CCcccccccCHHhHHhhhcccCCCC-CCcEEEecc
Q 001817 673 TPCLLPSWISKAAARQRRGRAGRVQ-PGECYHLYP 706 (1009)
Q Consensus 673 ~~~l~~~~iS~as~~QR~GRAGR~~-~G~c~~Lys 706 (1009)
.|..+++||+|||||.+ .+..+..+.
T Consensus 394 --------~s~~~~~Q~~GRaGR~~~~~l~~~v~~ 420 (851)
T COG1205 394 --------VSVLSFRQRAGRAGRRGQESLVLVVLR 420 (851)
T ss_pred --------chHHHHHHhhhhccCCCCCceEEEEeC
Confidence 26789999999999996 455454444
No 77
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]
Probab=99.94 E-value=2e-26 Score=263.60 Aligned_cols=362 Identities=21% Similarity=0.220 Sum_probs=243.2
Q ss_pred CCHHHHHHHHHHHHcCCeEEEEecCCCchhhhHHHHHHHHHHHHhcCCceEEEechhHHHHHHHHHHHHHHHhCCcccce
Q 001817 298 PSYKERDALLKAISENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERGEKLGES 377 (1009)
Q Consensus 298 Pi~~~q~~il~~l~~~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~IvvtqPrR~La~qva~rva~e~~~~~g~~ 377 (1009)
-..++|...+..|.+++.|+|+|-|.+|||.++..+|...+.. .-+||+|.|-++|.+|-++.+..|++. +|..
T Consensus 129 ~LDpFQ~~aI~Cidr~eSVLVSAHTSAGKTVVAeYAIA~sLr~-----kQRVIYTSPIKALSNQKYREl~~EF~D-VGLM 202 (1041)
T KOG0948|consen 129 TLDPFQSTAIKCIDRGESVLVSAHTSAGKTVVAEYAIAMSLRE-----KQRVIYTSPIKALSNQKYRELLEEFKD-VGLM 202 (1041)
T ss_pred ccCchHhhhhhhhcCCceEEEEeecCCCcchHHHHHHHHHHHh-----cCeEEeeChhhhhcchhHHHHHHHhcc-ccee
Confidence 3467789999999999999999999999998888887766533 348999999999999999999999963 5555
Q ss_pred eeeeeeeccccCCCcEEEEEccHHHHHHHhcCC-CCCCccEEEEeCCC-----cCCCcchHHHHHHHHHcccCCCCcEEE
Q 001817 378 VGYKVRLEGMKGRDTRLMFCTTGILLRRLLVDR-SLRGVTHVIVDEIH-----ERGMNEDFLLIVLKELLPRRPELRLIL 451 (1009)
Q Consensus 378 vGy~vr~e~~~~~~t~Iiv~T~g~Ll~~L~~~~-~l~~is~IIIDEaH-----eR~~~~d~ll~llk~ll~~~~~lkvIl 451 (1009)
.| +-..++++..+|||+++|-.+|-++. .++.+.+||+||+| |||+-.+- .++-..++.+.|+
T Consensus 203 TG-----DVTInP~ASCLVMTTEILRsMLYRGSEvmrEVaWVIFDEIHYMRDkERGVVWEE------TIIllP~~vr~VF 271 (1041)
T KOG0948|consen 203 TG-----DVTINPDASCLVMTTEILRSMLYRGSEVMREVAWVIFDEIHYMRDKERGVVWEE------TIILLPDNVRFVF 271 (1041)
T ss_pred ec-----ceeeCCCCceeeeHHHHHHHHHhccchHhheeeeEEeeeehhccccccceeeee------eEEeccccceEEE
Confidence 55 22245778899999999988887665 78999999999999 67754431 1223456889999
Q ss_pred eccCC-CHHHHHhhhC-----CCCeeccCCcccceeeEehhhHHHHhhhccCcccccccchhhhHHHHHHHHHHHHhhhh
Q 001817 452 MSATL-NAELFSSYFG-----GAPMLHIPGFTYPVRAYFLENILEMTRYRLNTYNQIDDYGQEKSWKMQKQALALRKRKS 525 (1009)
Q Consensus 452 mSATl-~~~~~~~yf~-----~~pvi~i~g~~~pv~~~yl~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 525 (1009)
+|||+ |+..|++|.. .|.++....|.-|..-+..+.- -.+. +.-+|.-+.-.. +
T Consensus 272 LSATiPNA~qFAeWI~~ihkQPcHVVYTdyRPTPLQHyifP~g--gdGl----ylvVDek~~Fre--------------d 331 (1041)
T KOG0948|consen 272 LSATIPNARQFAEWICHIHKQPCHVVYTDYRPTPLQHYIFPAG--GDGL----YLVVDEKGKFRE--------------D 331 (1041)
T ss_pred EeccCCCHHHHHHHHHHHhcCCceEEeecCCCCcceeeeecCC--CCee----EEEEecccccch--------------H
Confidence 99999 8999999985 4555555555555544321100 0000 000111000000 0
Q ss_pred hHHHHHHHHHHHhhhcchhhhhhhccccC--CCCCcchhhHHHHHHHHHhhcCCCcEEEEcCCHhHHHHHHHHHHcCCCC
Q 001817 526 SIASAVEDALEAADFREYSVQTQQSLSCW--NPDSIGFNLIEHVLCHIVKKERPGAVLVFMTGWDDINSLKDQLQAHPLL 603 (1009)
Q Consensus 526 ~~~~~v~~~l~~~~~~~~~~~~~~~l~~~--~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~~~~i~~l~~~L~~~~~~ 603 (1009)
.............+...++..... ...- .........+..++..+..+ ...+++||..++++|+..+-.+.+..+.
T Consensus 332 nF~~am~~l~~~~~~~~~~~~~~k-~~kG~~~~~~~~~s~i~kiVkmi~~~-~~~PVIvFSFSkkeCE~~Alqm~kldfN 409 (1041)
T KOG0948|consen 332 NFQKAMSVLRKAGESDGKKKANKK-GRKGGTGGKGPGDSDIYKIVKMIMER-NYLPVIVFSFSKKECEAYALQMSKLDFN 409 (1041)
T ss_pred HHHHHHHHhhccCCCccccccccc-cccCCcCCCCCCcccHHHHHHHHHhh-cCCceEEEEecHhHHHHHHHhhccCcCC
Confidence 000011100000010100000000 0000 00111123455666666554 4679999999999999998887653221
Q ss_pred -------------------CCC-------------CCeEEEEecCCCCHHHHHhhcCCCCCCceEEEEecCccccccCCC
Q 001817 604 -------------------GDP-------------SRVLLLACHGSMASSEQRLIFDKPEDGVRKIVLATNMAETSITIN 651 (1009)
Q Consensus 604 -------------------~~~-------------~~~~v~~lHs~l~~~er~~v~~~f~~G~~kVLVATniae~GIdIp 651 (1009)
... ..-.|+.|||||-+--++.|+-.|..|-+|+|+||.+.+.|+|+|
T Consensus 410 ~deEk~~V~~iF~nAi~~LseeDr~LPqie~iLPLL~RGIGIHHsGLLPIlKE~IEILFqEGLvKvLFATETFsiGLNMP 489 (1041)
T KOG0948|consen 410 TDEEKELVETIFNNAIDQLSEEDRELPQIENILPLLRRGIGIHHSGLLPILKEVIEILFQEGLVKVLFATETFSIGLNMP 489 (1041)
T ss_pred ChhHHHHHHHHHHHHHHhcChhhccchHHHHHHHHHHhccccccccchHHHHHHHHHHHhccHHHHHHhhhhhhhccCCc
Confidence 000 022588999999999999999999999999999999999999999
Q ss_pred CeeEEEeCCCCccccccCCCCCCcccccccCHHhHHhhhcccCCCC---CCcEEEecchh
Q 001817 652 DVVFVIDCGKAKETSYDALNNTPCLLPSWISKAAARQRRGRAGRVQ---PGECYHLYPRY 708 (1009)
Q Consensus 652 ~V~~VId~g~~k~~~yd~~~~~~~l~~~~iS~as~~QR~GRAGR~~---~G~c~~Lys~~ 708 (1009)
.-++|.- ..-| ||.. .-.|||-.+|+||.|||||.| .|.|+.++.+.
T Consensus 490 AkTVvFT-~~rK---fDG~------~fRwissGEYIQMSGRAGRRG~DdrGivIlmiDek 539 (1041)
T KOG0948|consen 490 AKTVVFT-AVRK---FDGK------KFRWISSGEYIQMSGRAGRRGIDDRGIVILMIDEK 539 (1041)
T ss_pred ceeEEEe-eccc---cCCc------ceeeecccceEEecccccccCCCCCceEEEEecCc
Confidence 8887752 2222 4443 348999999999999999996 49999998754
No 78
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=99.94 E-value=1e-25 Score=262.99 Aligned_cols=302 Identities=19% Similarity=0.206 Sum_probs=206.3
Q ss_pred HHHHHHHHHcCCeEEEEecCCCchhhhHHHHHHHHHHHHhcCCceEEEechhHHHHHHHHHHHHHHHhCCcccceeeeee
Q 001817 303 RDALLKAISENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERGEKLGESVGYKV 382 (1009)
Q Consensus 303 q~~il~~l~~~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~IvvtqPrR~La~qva~rva~e~~~~~g~~vGy~v 382 (1009)
|+++++++.+++++++..|||+|||.++.++.+-. .+..+|+.|-.+|.....+.+.. .|......-+-..
T Consensus 22 Q~evI~~~l~g~d~lvvmPTGgGKSlCyQiPAll~--------~G~TLVVSPLiSLM~DQV~~l~~-~Gi~A~~lnS~l~ 92 (590)
T COG0514 22 QQEIIDALLSGKDTLVVMPTGGGKSLCYQIPALLL--------EGLTLVVSPLISLMKDQVDQLEA-AGIRAAYLNSTLS 92 (590)
T ss_pred HHHHHHHHHcCCcEEEEccCCCCcchHhhhHHHhc--------CCCEEEECchHHHHHHHHHHHHH-cCceeehhhcccC
Confidence 78999999999999999999999998887776531 23566777999998766666622 2211111000001
Q ss_pred e------eccccCCCcEEEEEccHHHHHHHhcCC-CCCCccEEEEeCCCcCC-CcchHHHH--HHHHHcccCCCCcEEEe
Q 001817 383 R------LEGMKGRDTRLMFCTTGILLRRLLVDR-SLRGVTHVIVDEIHERG-MNEDFLLI--VLKELLPRRPELRLILM 452 (1009)
Q Consensus 383 r------~e~~~~~~t~Iiv~T~g~Ll~~L~~~~-~l~~is~IIIDEaHeR~-~~~d~ll~--llk~ll~~~~~lkvIlm 452 (1009)
+ .........+++|.+|++|...-..+. .-..+++++|||||+-+ +.-||-.. .+..+....|++.++++
T Consensus 93 ~~e~~~v~~~l~~g~~klLyisPErl~~~~f~~~L~~~~i~l~vIDEAHCiSqWGhdFRP~Y~~lg~l~~~~~~~p~~Al 172 (590)
T COG0514 93 REERQQVLNQLKSGQLKLLYISPERLMSPRFLELLKRLPISLVAIDEAHCISQWGHDFRPDYRRLGRLRAGLPNPPVLAL 172 (590)
T ss_pred HHHHHHHHHHHhcCceeEEEECchhhcChHHHHHHHhCCCceEEechHHHHhhcCCccCHhHHHHHHHHhhCCCCCEEEE
Confidence 1 111222457999999998753221111 24578999999999743 22244333 34455566678899999
Q ss_pred ccCCCHHH---HHhhhC-CCCeeccCCcccceeeEehhhHHHHhhhccCcccccccchhhhHHHHHHHHHHHHhhhhhHH
Q 001817 453 SATLNAEL---FSSYFG-GAPMLHIPGFTYPVRAYFLENILEMTRYRLNTYNQIDDYGQEKSWKMQKQALALRKRKSSIA 528 (1009)
Q Consensus 453 SATl~~~~---~~~yf~-~~pvi~i~g~~~pv~~~yl~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 528 (1009)
|||.+... +.+-++ +.+...+.+..-|- ++|
T Consensus 173 TATA~~~v~~DI~~~L~l~~~~~~~~sfdRpN-i~~-------------------------------------------- 207 (590)
T COG0514 173 TATATPRVRDDIREQLGLQDANIFRGSFDRPN-LAL-------------------------------------------- 207 (590)
T ss_pred eCCCChHHHHHHHHHhcCCCcceEEecCCCch-hhh--------------------------------------------
Confidence 99997653 222222 11111111110000 000
Q ss_pred HHHHHHHHHhhhcchhhhhhhccccCCCCCcchhhHHHHHHHHH--hhcCCCcEEEEcCCHhHHHHHHHHHHcCCCCCCC
Q 001817 529 SAVEDALEAADFREYSVQTQQSLSCWNPDSIGFNLIEHVLCHIV--KKERPGAVLVFMTGWDDINSLKDQLQAHPLLGDP 606 (1009)
Q Consensus 529 ~~v~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~--~~~~~g~iLVFl~~~~~i~~l~~~L~~~~~~~~~ 606 (1009)
. +.... +...++. .+. .....++.||||.|++.++.+++.|...
T Consensus 208 ~-v~~~~--------------------------~~~~q~~-fi~~~~~~~~~~GIIYc~sRk~~E~ia~~L~~~------ 253 (590)
T COG0514 208 K-VVEKG--------------------------EPSDQLA-FLATVLPQLSKSGIIYCLTRKKVEELAEWLRKN------ 253 (590)
T ss_pred h-hhhcc--------------------------cHHHHHH-HHHhhccccCCCeEEEEeeHHhHHHHHHHHHHC------
Confidence 0 00000 0000011 111 2345678999999999999999999987
Q ss_pred CCeEEEEecCCCCHHHHHhhcCCCCCCceEEEEecCccccccCCCCeeEEEeCCCCccccccCCCCCCcccccccCHHhH
Q 001817 607 SRVLLLACHGSMASSEQRLIFDKPEDGVRKIVLATNMAETSITINDVVFVIDCGKAKETSYDALNNTPCLLPSWISKAAA 686 (1009)
Q Consensus 607 ~~~~v~~lHs~l~~~er~~v~~~f~~G~~kVLVATniae~GIdIp~V~~VId~g~~k~~~yd~~~~~~~l~~~~iS~as~ 686 (1009)
++.+..+||+|+.++|+.+.+.|.++.++|+|||+...+|||.|||++||++++|+ |..+|
T Consensus 254 -g~~a~~YHaGl~~~eR~~~q~~f~~~~~~iiVAT~AFGMGIdKpdVRfViH~~lP~------------------s~EsY 314 (590)
T COG0514 254 -GISAGAYHAGLSNEERERVQQAFLNDEIKVMVATNAFGMGIDKPDVRFVIHYDLPG------------------SIESY 314 (590)
T ss_pred -CCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccccCccCCCCceEEEEecCCC------------------CHHHH
Confidence 78899999999999999999999999999999999999999999999999999998 88899
Q ss_pred HhhhcccCCCC-CCcEEEecchhhhh
Q 001817 687 RQRRGRAGRVQ-PGECYHLYPRYVYD 711 (1009)
Q Consensus 687 ~QR~GRAGR~~-~G~c~~Lys~~~~~ 711 (1009)
.|-+|||||.| +-.|+.||+..+..
T Consensus 315 yQE~GRAGRDG~~a~aill~~~~D~~ 340 (590)
T COG0514 315 YQETGRAGRDGLPAEAILLYSPEDIR 340 (590)
T ss_pred HHHHhhccCCCCcceEEEeeccccHH
Confidence 99999999995 69999999987653
No 79
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]
Probab=99.94 E-value=1.2e-25 Score=263.06 Aligned_cols=367 Identities=20% Similarity=0.206 Sum_probs=239.2
Q ss_pred CCCCHHHHHHHHHHHHcCCeEEEEecCCCchhhhHHHHHHHHHHHHhcCCceEEEechhHHHHHHHHHHHHHHHhCCccc
Q 001817 296 SLPSYKERDALLKAISENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERGEKLG 375 (1009)
Q Consensus 296 ~LPi~~~q~~il~~l~~~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~IvvtqPrR~La~qva~rva~e~~~~~g 375 (1009)
.+-+..+|++.+.++..+..|+|.|+|.+|||.++..++.-. .....+.++|.|-++|.+|-.+.+...+|. +|
T Consensus 295 pFelD~FQk~Ai~~lerg~SVFVAAHTSAGKTvVAEYAiala-----q~h~TR~iYTSPIKALSNQKfRDFk~tF~D-vg 368 (1248)
T KOG0947|consen 295 PFELDTFQKEAIYHLERGDSVFVAAHTSAGKTVVAEYAIALA-----QKHMTRTIYTSPIKALSNQKFRDFKETFGD-VG 368 (1248)
T ss_pred CCCccHHHHHHHHHHHcCCeEEEEecCCCCcchHHHHHHHHH-----HhhccceEecchhhhhccchHHHHHHhccc-cc
Confidence 344566777888889999999999999999998887665432 224568999999999999999999887764 34
Q ss_pred ceeeeeeeeccccCCCcEEEEEccHHHHHHHhcCC-CCCCccEEEEeCCC-----cCCCcchHHHHHHHHHcc-cCCCCc
Q 001817 376 ESVGYKVRLEGMKGRDTRLMFCTTGILLRRLLVDR-SLRGVTHVIVDEIH-----ERGMNEDFLLIVLKELLP-RRPELR 448 (1009)
Q Consensus 376 ~~vGy~vr~e~~~~~~t~Iiv~T~g~Ll~~L~~~~-~l~~is~IIIDEaH-----eR~~~~d~ll~llk~ll~-~~~~lk 448 (1009)
...| +...++.+.++|||+++|-.+|-++. .++++..||+||+| |||.-. ..++- ..++++
T Consensus 369 LlTG-----DvqinPeAsCLIMTTEILRsMLYrgadliRDvE~VIFDEVHYiND~eRGvVW-------EEViIMlP~HV~ 436 (1248)
T KOG0947|consen 369 LLTG-----DVQINPEASCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYINDVERGVVW-------EEVIIMLPRHVN 436 (1248)
T ss_pred eeec-----ceeeCCCcceEeehHHHHHHHHhcccchhhccceEEEeeeeecccccccccc-------eeeeeeccccce
Confidence 3344 44456788999999999988887766 78999999999999 566443 33333 345789
Q ss_pred EEEeccCC-CHHHHHhhhCC---C--CeeccCCcccceeeEehhh--HHHHhhhccCcccccccchhhhHHHHHHHHHHH
Q 001817 449 LILMSATL-NAELFSSYFGG---A--PMLHIPGFTYPVRAYFLEN--ILEMTRYRLNTYNQIDDYGQEKSWKMQKQALAL 520 (1009)
Q Consensus 449 vIlmSATl-~~~~~~~yf~~---~--pvi~i~g~~~pv~~~yl~~--i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 520 (1009)
+|++|||+ |...|++|.|. . .++....|..|.+.++.-. ...+. +..+. ...+..+.....
T Consensus 437 ~IlLSATVPN~~EFA~WIGRtK~K~IyViST~kRPVPLEh~l~t~~~l~kii----------dq~g~-fl~~~~~~a~~~ 505 (1248)
T KOG0947|consen 437 FILLSATVPNTLEFADWIGRTKQKTIYVISTSKRPVPLEHYLYTKKSLFKII----------DQNGI-FLLKGIKDAKDS 505 (1248)
T ss_pred EEEEeccCCChHHHHHHhhhccCceEEEEecCCCccceEEEEEeccceehhh----------cccch-hhhhcchhhhhh
Confidence 99999999 89999999983 2 3455556667776654322 11000 00000 000000000000
Q ss_pred HhhhhhHHHHHHHHHHHhhhcchhhhh---------hhccccCCCCCcch--hhHHHHHHHHHhhcCCCcEEEEcCCHhH
Q 001817 521 RKRKSSIASAVEDALEAADFREYSVQT---------QQSLSCWNPDSIGF--NLIEHVLCHIVKKERPGAVLVFMTGWDD 589 (1009)
Q Consensus 521 ~~~~~~~~~~v~~~l~~~~~~~~~~~~---------~~~l~~~~~~~i~~--~li~~ll~~i~~~~~~g~iLVFl~~~~~ 589 (1009)
.+...... .++ ......+...+. ......+ +..... ..+..++.++ +...--+++|||.+++.
T Consensus 506 ~~~~ak~~-~~~---~~~~~~~rgs~~~ggk~~~~~g~~r~~~-~~~nrr~~~~~l~lin~L-~k~~lLP~VvFvFSkkr 579 (1248)
T KOG0947|consen 506 LKKEAKFV-DVE---KSDARGGRGSQKRGGKTNYHNGGSRGSG-IGKNRRKQPTWLDLINHL-RKKNLLPVVVFVFSKKR 579 (1248)
T ss_pred hccccccc-ccc---cccccccccccccCCcCCCCCCCccccc-ccccccccchHHHHHHHH-hhcccCceEEEEEcccc
Confidence 00000000 000 000000000000 0001111 111111 2344555554 44456799999999999
Q ss_pred HHHHHHHHHcCCCCCC-------------------CC-------------CeEEEEecCCCCHHHHHhhcCCCCCCceEE
Q 001817 590 INSLKDQLQAHPLLGD-------------------PS-------------RVLLLACHGSMASSEQRLIFDKPEDGVRKI 637 (1009)
Q Consensus 590 i~~l~~~L~~~~~~~~-------------------~~-------------~~~v~~lHs~l~~~er~~v~~~f~~G~~kV 637 (1009)
|++.++.|....+..+ .. .-.++.||||+-+--++-|+..|..|-+||
T Consensus 580 Cde~a~~L~~~nL~~~~EKseV~lfl~k~~~rLk~~DR~LPQvl~m~~ll~RGiaVHH~GlLPivKE~VE~LFqrGlVKV 659 (1248)
T KOG0947|consen 580 CDEYADYLTNLNLTDSKEKSEVHLFLSKAVARLKGEDRNLPQVLSMRSLLLRGIAVHHGGLLPIVKEVVELLFQRGLVKV 659 (1248)
T ss_pred HHHHHHHHhccCcccchhHHHHHHHHHHHHHhcChhhccchHHHHHHHHHhhcchhhcccchHHHHHHHHHHHhcCceEE
Confidence 9999999986432111 00 125889999999999999999999999999
Q ss_pred EEecCccccccCCCCeeEEEeCCCCccccccCCCCCCcccccccCHHhHHhhhcccCCCC---CCcEEEecch
Q 001817 638 VLATNMAETSITINDVVFVIDCGKAKETSYDALNNTPCLLPSWISKAAARQRRGRAGRVQ---PGECYHLYPR 707 (1009)
Q Consensus 638 LVATniae~GIdIp~V~~VId~g~~k~~~yd~~~~~~~l~~~~iS~as~~QR~GRAGR~~---~G~c~~Lys~ 707 (1009)
|+||.++++|||+|.-.+|+++ +.| +|... -..+...+|.||+|||||.| .|.++.+...
T Consensus 660 LFATETFAMGVNMPARtvVF~S-l~K---hDG~e------fR~L~PGEytQMAGRAGRRGlD~tGTVii~~~~ 722 (1248)
T KOG0947|consen 660 LFATETFAMGVNMPARTVVFSS-LRK---HDGNE------FRELLPGEYTQMAGRAGRRGLDETGTVIIMCKD 722 (1248)
T ss_pred EeehhhhhhhcCCCceeEEeee-hhh---ccCcc------eeecCChhHHhhhccccccccCcCceEEEEecC
Confidence 9999999999999999888874 333 33222 13457889999999999996 4888877554
No 80
>PRK09401 reverse gyrase; Reviewed
Probab=99.93 E-value=3.8e-25 Score=281.70 Aligned_cols=290 Identities=17% Similarity=0.174 Sum_probs=181.9
Q ss_pred HHhcChhhHHHHHhhcCCCCHHHHHHHHHHHHcCCeEEEEecCCCchhhhHHHHHHHHHHHHhcCCceEEEechhHHHHH
Q 001817 280 AWQESPEGQKMLEFRRSLPSYKERDALLKAISENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISA 359 (1009)
Q Consensus 280 ~~~~~~~~~~l~~~r~~LPi~~~q~~il~~l~~~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~IvvtqPrR~La 359 (1009)
.|....++.++++.......+..|.++++.+..+++++++||||||||+ +.+++...+. .. +.++++++|||+||
T Consensus 62 ~~~~~~~~~~~f~~~~G~~pt~iQ~~~i~~il~g~dv~i~ApTGsGKT~-f~l~~~~~l~--~~--g~~alIL~PTreLa 136 (1176)
T PRK09401 62 LEEEYKEFEKFFKKKTGSKPWSLQRTWAKRLLLGESFAIIAPTGVGKTT-FGLVMSLYLA--KK--GKKSYIIFPTRLLV 136 (1176)
T ss_pred HHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHCCCcEEEEcCCCCCHHH-HHHHHHHHHH--hc--CCeEEEEeccHHHH
Confidence 3444445556666655556667777888888899999999999999996 4444433332 12 45677777999999
Q ss_pred HHHHHHHHHHhCCcccceeeeeeee------------ccccCCCcEEEEEccHHHHHHHhcCCCCCCccEEEEeCCCcCC
Q 001817 360 MAVSERVAAERGEKLGESVGYKVRL------------EGMKGRDTRLMFCTTGILLRRLLVDRSLRGVTHVIVDEIHERG 427 (1009)
Q Consensus 360 ~qva~rva~e~~~~~g~~vGy~vr~------------e~~~~~~t~Iiv~T~g~Ll~~L~~~~~l~~is~IIIDEaHeR~ 427 (1009)
.|+++++..... ..+..+...... +.....+.+|+|+|||.|.+.+. .-....+++|||||||...
T Consensus 137 ~Qi~~~l~~l~~-~~~~~~~~~~g~~~~~~~ek~~~~~~l~~~~~~IlV~Tp~rL~~~~~-~l~~~~~~~lVvDEaD~~L 214 (1176)
T PRK09401 137 EQVVEKLEKFGE-KVGCGVKILYYHSSLKKKEKEEFLERLKEGDFDILVTTSQFLSKNFD-ELPKKKFDFVFVDDVDAVL 214 (1176)
T ss_pred HHHHHHHHHHhh-hcCceEEEEEccCCcchhHHHHHHHHHhcCCCCEEEECHHHHHHHHH-hccccccCEEEEEChHHhh
Confidence 999999976542 222222111100 01122458999999999998775 2244569999999999521
Q ss_pred ---Cc-------chH----HHHHHHHHcc---------------------cCCCCcEEEeccCCCHHHHH-hhhCCCCee
Q 001817 428 ---MN-------EDF----LLIVLKELLP---------------------RRPELRLILMSATLNAELFS-SYFGGAPML 471 (1009)
Q Consensus 428 ---~~-------~d~----ll~llk~ll~---------------------~~~~lkvIlmSATl~~~~~~-~yf~~~pvi 471 (1009)
-+ .+| +...++.+-. ...+.|++++|||+++.... .+|...-.+
T Consensus 215 ~~~k~id~~l~~lGF~~~~i~~i~~~i~~~~~~~~~~~~i~~l~~~i~~~~~~~~q~ilfSAT~~~~~~~~~l~~~ll~~ 294 (1176)
T PRK09401 215 KSSKNIDKLLYLLGFSEEDIEKAMELIRLKRKYEEIYEKIRELEEKIAELKDKKGVLVVSSATGRPRGNRVKLFRELLGF 294 (1176)
T ss_pred hcccchhhHHHhCCCCHHHHHHHHHhcccccccchhhhHHHHHHHhhhhcccCCceEEEEeCCCCccchHHHHhhccceE
Confidence 11 111 1111211110 01156899999999653221 122211011
Q ss_pred ccCCccc---ceeeEehhhHHHHhhhccCcccccccchhhhHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhcchhhhhh
Q 001817 472 HIPGFTY---PVRAYFLENILEMTRYRLNTYNQIDDYGQEKSWKMQKQALALRKRKSSIASAVEDALEAADFREYSVQTQ 548 (1009)
Q Consensus 472 ~i~g~~~---pv~~~yl~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~~ 548 (1009)
.+..... .+...|...
T Consensus 295 ~v~~~~~~~rnI~~~yi~~------------------------------------------------------------- 313 (1176)
T PRK09401 295 EVGSPVFYLRNIVDSYIVD------------------------------------------------------------- 313 (1176)
T ss_pred EecCcccccCCceEEEEEc-------------------------------------------------------------
Confidence 1111000 011111000
Q ss_pred hccccCCCCCcchhhHHHHHHHHHhhcCCCcEEEEcCCHhH---HHHHHHHHHcCCCCCCCCCeEEEEecCCCCHHHHHh
Q 001817 549 QSLSCWNPDSIGFNLIEHVLCHIVKKERPGAVLVFMTGWDD---INSLKDQLQAHPLLGDPSRVLLLACHGSMASSEQRL 625 (1009)
Q Consensus 549 ~~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~~~~---i~~l~~~L~~~~~~~~~~~~~v~~lHs~l~~~er~~ 625 (1009)
. .....+..+++.. +..+||||++... ++.+++.|... ++.+..+||+| ++
T Consensus 314 --------~-----~k~~~L~~ll~~l-~~~~LIFv~t~~~~~~ae~l~~~L~~~-------gi~v~~~hg~l----~~- 367 (1176)
T PRK09401 314 --------E-----DSVEKLVELVKRL-GDGGLIFVPSDKGKEYAEELAEYLEDL-------GINAELAISGF----ER- 367 (1176)
T ss_pred --------c-----cHHHHHHHHHHhc-CCCEEEEEecccChHHHHHHHHHHHHC-------CCcEEEEeCcH----HH-
Confidence 0 0111223333333 3579999999777 99999999987 78899999999 22
Q ss_pred hcCCCCCCceEEEEe----cCccccccCCCC-eeEEEeCCCCc
Q 001817 626 IFDKPEDGVRKIVLA----TNMAETSITIND-VVFVIDCGKAK 663 (1009)
Q Consensus 626 v~~~f~~G~~kVLVA----Tniae~GIdIp~-V~~VId~g~~k 663 (1009)
.++.|++|+.+|||| |+++++|||+|+ |+|||++|.|+
T Consensus 368 ~l~~F~~G~~~VLVatas~tdv~aRGIDiP~~IryVI~y~vP~ 410 (1176)
T PRK09401 368 KFEKFEEGEVDVLVGVASYYGVLVRGIDLPERIRYAIFYGVPK 410 (1176)
T ss_pred HHHHHHCCCCCEEEEecCCCCceeecCCCCcceeEEEEeCCCC
Confidence 349999999999999 699999999999 89999999998
No 81
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=99.93 E-value=4.3e-25 Score=269.36 Aligned_cols=368 Identities=21% Similarity=0.261 Sum_probs=240.8
Q ss_pred cCCCCHHHHHHHHHHHHcCCeEEEEecCCCchhhhHHHHHHHHHHHHhcCCceEEEechhHHHHHHHHHHHHHHHhCCcc
Q 001817 295 RSLPSYKERDALLKAISENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERGEKL 374 (1009)
Q Consensus 295 ~~LPi~~~q~~il~~l~~~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~IvvtqPrR~La~qva~rva~e~~~~~ 374 (1009)
..+.....|++.+.+|..++.|+++||||||||.++..++...+. . +.++++|.|.++|.+|.+..+..++|.-
T Consensus 116 ~~F~LD~fQ~~a~~~Ler~esVlV~ApTssGKTvVaeyAi~~al~---~--~qrviYTsPIKALsNQKyrdl~~~fgdv- 189 (1041)
T COG4581 116 YPFELDPFQQEAIAILERGESVLVCAPTSSGKTVVAEYAIALALR---D--GQRVIYTSPIKALSNQKYRDLLAKFGDV- 189 (1041)
T ss_pred CCCCcCHHHHHHHHHHhCCCcEEEEccCCCCcchHHHHHHHHHHH---c--CCceEeccchhhhhhhHHHHHHHHhhhh-
Confidence 456667778888899999999999999999999887776665442 2 2349999999999999999999999865
Q ss_pred cceeeeeeeeccccCCCcEEEEEccHHHHHHHhcCC-CCCCccEEEEeCCC-----cCCCcchHHHHHHHHHcc-cCCCC
Q 001817 375 GESVGYKVRLEGMKGRDTRLMFCTTGILLRRLLVDR-SLRGVTHVIVDEIH-----ERGMNEDFLLIVLKELLP-RRPEL 447 (1009)
Q Consensus 375 g~~vGy~vr~e~~~~~~t~Iiv~T~g~Ll~~L~~~~-~l~~is~IIIDEaH-----eR~~~~d~ll~llk~ll~-~~~~l 447 (1009)
...+|.-++. -..++++.++|+|+++|-+++..+. .+.++.+||+||+| +||.- +...+- ....+
T Consensus 190 ~~~vGL~TGD-v~IN~~A~clvMTTEILRnMlyrg~~~~~~i~~ViFDEvHyi~D~eRG~V-------WEE~Ii~lP~~v 261 (1041)
T COG4581 190 ADMVGLMTGD-VSINPDAPCLVMTTEILRNMLYRGSESLRDIEWVVFDEVHYIGDRERGVV-------WEEVIILLPDHV 261 (1041)
T ss_pred hhhccceecc-eeeCCCCceEEeeHHHHHHHhccCcccccccceEEEEeeeeccccccchh-------HHHHHHhcCCCC
Confidence 3334433322 2345788999999999988888774 89999999999999 34433 223222 23467
Q ss_pred cEEEeccCC-CHHHHHhhhC-----CCCeeccCCcccceeeEehhhHHHHhhhccCcccccccchhhhHHHHHHHHHHHH
Q 001817 448 RLILMSATL-NAELFSSYFG-----GAPMLHIPGFTYPVRAYFLENILEMTRYRLNTYNQIDDYGQEKSWKMQKQALALR 521 (1009)
Q Consensus 448 kvIlmSATl-~~~~~~~yf~-----~~pvi~i~g~~~pv~~~yl~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 521 (1009)
++|+||||+ |++.|+.|++ ++-++..+.|.-|...++.... . ..+..++........ +.
T Consensus 262 ~~v~LSATv~N~~EF~~Wi~~~~~~~~~vv~t~~RpvPL~~~~~~~~-~----------l~~lvde~~~~~~~~----~~ 326 (1041)
T COG4581 262 RFVFLSATVPNAEEFAEWIQRVHSQPIHVVSTEHRPVPLEHFVYVGK-G----------LFDLVDEKKKFNAEN----FP 326 (1041)
T ss_pred cEEEEeCCCCCHHHHHHHHHhccCCCeEEEeecCCCCCeEEEEecCC-c----------eeeeecccccchhhc----ch
Confidence 999999999 9999999998 4556777788888887776430 0 000000000000000 00
Q ss_pred hhhhhHHHHHHHHHHHhhhc-c-hhhhhhhccccCCCCCcchhhHHHHHHHHHhhcCCCcEEEEcCCHhHHHHHHHHHHc
Q 001817 522 KRKSSIASAVEDALEAADFR-E-YSVQTQQSLSCWNPDSIGFNLIEHVLCHIVKKERPGAVLVFMTGWDDINSLKDQLQA 599 (1009)
Q Consensus 522 ~~~~~~~~~v~~~l~~~~~~-~-~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~~~~i~~l~~~L~~ 599 (1009)
+....+....+......+.. . +.... ... .+..........++.++ .....-++++|+-++..|+..+..+..
T Consensus 327 ~a~~~l~~~~~~~~~~~~~~~~~~a~~~-~~~---~~~~~~~~~~~~iv~~l-~~~~~lP~I~F~FSr~~Ce~~a~~~~~ 401 (1041)
T COG4581 327 SANRSLSCFSEKVRETDDGDVGRYARRT-KAL---RGSAKGPAGRPEIVNKL-DKDNLLPAIVFSFSRRGCEEAAQILST 401 (1041)
T ss_pred hhhhhhhccchhccccCccccccccccc-ccc---CCcccccccchHHHhhh-hhhcCCceEEEEEchhhHHHHHHHhcc
Confidence 00000000000000000000 0 00000 000 00111111112333333 334467999999999999998887763
Q ss_pred CCC--------------------CCC----CC----------CeEEEEecCCCCHHHHHhhcCCCCCCceEEEEecCccc
Q 001817 600 HPL--------------------LGD----PS----------RVLLLACHGSMASSEQRLIFDKPEDGVRKIVLATNMAE 645 (1009)
Q Consensus 600 ~~~--------------------~~~----~~----------~~~v~~lHs~l~~~er~~v~~~f~~G~~kVLVATniae 645 (1009)
... ++. .+ .-.++.||+||-+..+..+.+.|..|-+||++||.+++
T Consensus 402 ldl~~~~~~e~~i~~ii~~~i~~L~~ed~~lp~~~~~~~~~L~RGiavHH~GlLP~~K~~vE~Lfq~GLvkvvFaTeT~s 481 (1041)
T COG4581 402 LDLVLTEEKERAIREIIDHAIGDLAEEDRELPLQILEISALLLRGIAVHHAGLLPAIKELVEELFQEGLVKVVFATETFA 481 (1041)
T ss_pred cccccCCcHHHHHHHHHHHHHhhcChhhhcCcccHHHHHHHHhhhhhhhccccchHHHHHHHHHHhccceeEEeehhhhh
Confidence 211 000 00 11366899999999999999999999999999999999
Q ss_pred cccCCCCeeEEEeCCCCccccccCCCCCCcccccccCHHhHHhhhcccCCCC---CCcEEEecc
Q 001817 646 TSITINDVVFVIDCGKAKETSYDALNNTPCLLPSWISKAAARQRRGRAGRVQ---PGECYHLYP 706 (1009)
Q Consensus 646 ~GIdIp~V~~VId~g~~k~~~yd~~~~~~~l~~~~iS~as~~QR~GRAGR~~---~G~c~~Lys 706 (1009)
.|+|+|.-++|+ +++.| ||.. .-.|++..+|.|+.|||||.| .|.++.+.+
T Consensus 482 ~GiNmPartvv~-~~l~K---~dG~------~~r~L~~gEy~QmsGRAGRRGlD~~G~vI~~~~ 535 (1041)
T COG4581 482 IGINMPARTVVF-TSLSK---FDGN------GHRWLSPGEYTQMSGRAGRRGLDVLGTVIVIEP 535 (1041)
T ss_pred hhcCCcccceee-eeeEE---ecCC------ceeecChhHHHHhhhhhccccccccceEEEecC
Confidence 999999777665 56665 5532 237889999999999999996 488888743
No 82
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.92 E-value=1e-23 Score=253.63 Aligned_cols=320 Identities=15% Similarity=0.136 Sum_probs=189.5
Q ss_pred CCCCHHHHHHHHHHHHc-C--CeEEEEecCCCchhhhHHHHHHHHHHHHhcCCceEEEechhHHHHHHHHHHHHHHHhCC
Q 001817 296 SLPSYKERDALLKAISE-N--QVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERGE 372 (1009)
Q Consensus 296 ~LPi~~~q~~il~~l~~-~--~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~IvvtqPrR~La~qva~rva~e~~~ 372 (1009)
...+..+|++.+..+.. + +..+|+.|||+|||.++...+.. + +. .++|++|+..|+.|+.+.+.+.++.
T Consensus 253 ~~~LRpYQ~eAl~~~~~~gr~r~GIIvLPtGaGKTlvai~aa~~-l-----~k--~tLILvps~~Lv~QW~~ef~~~~~l 324 (732)
T TIGR00603 253 TTQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVTAACT-V-----KK--SCLVLCTSAVSVEQWKQQFKMWSTI 324 (732)
T ss_pred CCCcCHHHHHHHHHHHhcCCCCCcEEEeCCCCChHHHHHHHHHH-h-----CC--CEEEEeCcHHHHHHHHHHHHHhcCC
Confidence 34566777777777654 3 37899999999999887654432 1 22 3455559999999999999877644
Q ss_pred cccceee-eeeeeccccCCCcEEEEEccHHHHHHHhcC-------CCC--CCccEEEEeCCCcCCCcchHHHHHHHHHcc
Q 001817 373 KLGESVG-YKVRLEGMKGRDTRLMFCTTGILLRRLLVD-------RSL--RGVTHVIVDEIHERGMNEDFLLIVLKELLP 442 (1009)
Q Consensus 373 ~~g~~vG-y~vr~e~~~~~~t~Iiv~T~g~Ll~~L~~~-------~~l--~~is~IIIDEaHeR~~~~d~ll~llk~ll~ 442 (1009)
.... +| |.-...........|+|+|..++....... ..+ ..+++||+||||. +.......++..+
T Consensus 325 ~~~~-I~~~tg~~k~~~~~~~~VvVtTYq~l~~~~~r~~~~~~~l~~l~~~~~gLII~DEvH~--lpA~~fr~il~~l-- 399 (732)
T TIGR00603 325 DDSQ-ICRFTSDAKERFHGEAGVVVSTYSMVAHTGKRSYESEKVMEWLTNREWGLILLDEVHV--VPAAMFRRVLTIV-- 399 (732)
T ss_pred CCce-EEEEecCcccccccCCcEEEEEHHHhhcccccchhhhHHHHHhccccCCEEEEEcccc--ccHHHHHHHHHhc--
Confidence 3222 22 211111111124679999999875322111 122 4688999999996 3333333333332
Q ss_pred cCCCCcEEEeccCCCH--H---HHHhhhCCCCeecc-------CCcccceeeEehhhHHHHhhhccCcccccccchhhhH
Q 001817 443 RRPELRLILMSATLNA--E---LFSSYFGGAPMLHI-------PGFTYPVRAYFLENILEMTRYRLNTYNQIDDYGQEKS 510 (1009)
Q Consensus 443 ~~~~lkvIlmSATl~~--~---~~~~yf~~~pvi~i-------~g~~~pv~~~yl~~i~~~~~~~~~~~~~i~~~~~~~~ 510 (1009)
.....+++|||+-. + .+..++| +.+... .|..-|++.. +- .+. ...+.
T Consensus 400 --~a~~RLGLTATP~ReD~~~~~L~~LiG-P~vye~~~~eLi~~G~LA~~~~~--ev-------------~v~-~t~~~- 459 (732)
T TIGR00603 400 --QAHCKLGLTATLVREDDKITDLNFLIG-PKLYEANWMELQKKGFIANVQCA--EV-------------WCP-MTPEF- 459 (732)
T ss_pred --CcCcEEEEeecCcccCCchhhhhhhcC-CeeeecCHHHHHhCCccccceEE--EE-------------Eec-CCHHH-
Confidence 23357999999932 1 2222333 222111 1222121110 00 000 00000
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHhhhcchhhhhhhccccCCCCCcchhhHHHHHHHHHhh--cCCCcEEEEcCCHh
Q 001817 511 WKMQKQALALRKRKSSIASAVEDALEAADFREYSVQTQQSLSCWNPDSIGFNLIEHVLCHIVKK--ERPGAVLVFMTGWD 588 (1009)
Q Consensus 511 ~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~--~~~g~iLVFl~~~~ 588 (1009)
............ ..+...++ .+...+..+++. ..+.++|||+....
T Consensus 460 ---~~~yl~~~~~~k-----------------------~~l~~~np------~K~~~~~~Li~~he~~g~kiLVF~~~~~ 507 (732)
T TIGR00603 460 ---YREYLRENSRKR-----------------------MLLYVMNP------NKFRACQFLIRFHEQRGDKIIVFSDNVF 507 (732)
T ss_pred ---HHHHHHhcchhh-----------------------hHHhhhCh------HHHHHHHHHHHHHhhcCCeEEEEeCCHH
Confidence 000000000000 00000111 112222223322 25679999999999
Q ss_pred HHHHHHHHHHcCCCCCCCCCeEEEEecCCCCHHHHHhhcCCCCCC-ceEEEEecCccccccCCCCeeEEEeCCCCccccc
Q 001817 589 DINSLKDQLQAHPLLGDPSRVLLLACHGSMASSEQRLIFDKPEDG-VRKIVLATNMAETSITINDVVFVIDCGKAKETSY 667 (1009)
Q Consensus 589 ~i~~l~~~L~~~~~~~~~~~~~v~~lHs~l~~~er~~v~~~f~~G-~~kVLVATniae~GIdIp~V~~VId~g~~k~~~y 667 (1009)
.+..+++.|. +..+||+++..+|..+++.|+.| .+++||+|+++.+|||+|++++||....+.
T Consensus 508 ~l~~~a~~L~------------~~~I~G~ts~~ER~~il~~Fr~~~~i~vLv~SkVgdeGIDlP~a~vvI~~s~~~---- 571 (732)
T TIGR00603 508 ALKEYAIKLG------------KPFIYGPTSQQERMQILQNFQHNPKVNTIFLSKVGDTSIDLPEANVLIQISSHY---- 571 (732)
T ss_pred HHHHHHHHcC------------CceEECCCCHHHHHHHHHHHHhCCCccEEEEecccccccCCCCCCEEEEeCCCC----
Confidence 9888888773 23579999999999999999865 789999999999999999999999844331
Q ss_pred cCCCCCCcccccccCHHhHHhhhcccCCCCCC-cE-------EEecchhh
Q 001817 668 DALNNTPCLLPSWISKAAARQRRGRAGRVQPG-EC-------YHLYPRYV 709 (1009)
Q Consensus 668 d~~~~~~~l~~~~iS~as~~QR~GRAGR~~~G-~c-------~~Lys~~~ 709 (1009)
-|+.+|.||.||++|.++| .+ |.|.+++.
T Consensus 572 -------------gS~~q~iQRlGRilR~~~~~~~~~~~A~fY~lVs~dT 608 (732)
T TIGR00603 572 -------------GSRRQEAQRLGRILRAKKGSDAEEYNAFFYSLVSKDT 608 (732)
T ss_pred -------------CCHHHHHHHhcccccCCCCCccccccceEEEEecCCc
Confidence 1788999999999999764 43 77776543
No 83
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.92 E-value=6.4e-25 Score=238.38 Aligned_cols=327 Identities=20% Similarity=0.195 Sum_probs=224.9
Q ss_pred hHHHHHhhcCCCCHHHHHHHHHHHHcCCeEEEEecCCCchhhhHHHHHHHHHHHHhcCCceEEEechhHHHHHHHHHHHH
Q 001817 287 GQKMLEFRRSLPSYKERDALLKAISENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERV 366 (1009)
Q Consensus 287 ~~~l~~~r~~LPi~~~q~~il~~l~~~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~IvvtqPrR~La~qva~rv 366 (1009)
++.+.+.-..-|..+||..|. .+.++++++-.|-||||||.++.+++++.+.... ..+.+.+++.|+|+||.|+.+.+
T Consensus 33 ~raI~kkg~~~ptpiqRKTip-liLe~~dvv~martgsgktaaf~ipm~e~Lk~~s-~~g~RalilsptreLa~qtlkvv 110 (529)
T KOG0337|consen 33 LRAIHKKGFNTPTPIQRKTIP-LILEGRDVVGMARTGSGKTAAFLIPMIEKLKSHS-QTGLRALILSPTRELALQTLKVV 110 (529)
T ss_pred HHHHHHhhcCCCCchhccccc-ceeeccccceeeecCCcchhhHHHHHHHHHhhcc-ccccceeeccCcHHHHHHHHHHH
Confidence 445666666778888877764 5668999999999999999999999999887654 34556677779999999988766
Q ss_pred HHHhCC----cccceeeeeeeec--cccCCCcEEEEEccHHHHHHHhcCC-CCCCccEEEEeCCCcCCCcchHHHHHHHH
Q 001817 367 AAERGE----KLGESVGYKVRLE--GMKGRDTRLMFCTTGILLRRLLVDR-SLRGVTHVIVDEIHERGMNEDFLLIVLKE 439 (1009)
Q Consensus 367 a~e~~~----~~g~~vGy~vr~e--~~~~~~t~Iiv~T~g~Ll~~L~~~~-~l~~is~IIIDEaHeR~~~~d~ll~llk~ 439 (1009)
+. +|. .....+|+.--.+ .....+++|+++|||+++.....-. .|+.+.+||+||++ |-....|...+-+.
T Consensus 111 kd-lgrgt~lr~s~~~ggD~~eeqf~~l~~npDii~ATpgr~~h~~vem~l~l~sveyVVfdEad-rlfemgfqeql~e~ 188 (529)
T KOG0337|consen 111 KD-LGRGTKLRQSLLVGGDSIEEQFILLNENPDIIIATPGRLLHLGVEMTLTLSSVEYVVFDEAD-RLFEMGFQEQLHEI 188 (529)
T ss_pred HH-hccccchhhhhhcccchHHHHHHHhccCCCEEEecCceeeeeehheeccccceeeeeehhhh-HHHhhhhHHHHHHH
Confidence 44 332 2222344322121 1234679999999999986554333 68899999999999 43444344444333
Q ss_pred HcccCCCCcEEEeccCCCHHHHHhhhCCCCeeccCCcccceeeEehhhHHHHhhhccCcccccccchhhhHHHHHHHHHH
Q 001817 440 LLPRRPELRLILMSATLNAELFSSYFGGAPMLHIPGFTYPVRAYFLENILEMTRYRLNTYNQIDDYGQEKSWKMQKQALA 519 (1009)
Q Consensus 440 ll~~~~~lkvIlmSATl~~~~~~~yf~~~pvi~i~g~~~pv~~~yl~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 519 (1009)
+-....+.|.++||||++..... + .-.|-..|+-+. ++ + +
T Consensus 189 l~rl~~~~QTllfSatlp~~lv~-f-------akaGl~~p~lVR-ld-v-------------------e----------- 228 (529)
T KOG0337|consen 189 LSRLPESRQTLLFSATLPRDLVD-F-------AKAGLVPPVLVR-LD-V-------------------E----------- 228 (529)
T ss_pred HHhCCCcceEEEEeccCchhhHH-H-------HHccCCCCceEE-ee-h-------------------h-----------
Confidence 43444567999999999765211 1 112333444333 11 0 0
Q ss_pred HHhhhhhHHHHHHHHHHHhhhcchhhhhhhccccCCCCCcchhhHHHHHHHHHhhc-CCCcEEEEcCCHhHHHHHHHHHH
Q 001817 520 LRKRKSSIASAVEDALEAADFREYSVQTQQSLSCWNPDSIGFNLIEHVLCHIVKKE-RPGAVLVFMTGWDDINSLKDQLQ 598 (1009)
Q Consensus 520 ~~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~~-~~g~iLVFl~~~~~i~~l~~~L~ 598 (1009)
..+.+.++..+ ..+..+.+...|.+++... .+.+++||+++..+++.+...|.
T Consensus 229 -----tkise~lk~~f---------------------~~~~~a~K~aaLl~il~~~~~~~~t~vf~~tk~hve~~~~ll~ 282 (529)
T KOG0337|consen 229 -----TKISELLKVRF---------------------FRVRKAEKEAALLSILGGRIKDKQTIVFVATKHHVEYVRGLLR 282 (529)
T ss_pred -----hhcchhhhhhe---------------------eeeccHHHHHHHHHHHhccccccceeEEecccchHHHHHHHHH
Confidence 00000000000 0011122333445555433 24579999999999999999999
Q ss_pred cCCCCCCCCCeEEEEecCCCCHHHHHhhcCCCCCCceEEEEecCccccccCCCCeeEEEeCCCCccccccCCCCCCcccc
Q 001817 599 AHPLLGDPSRVLLLACHGSMASSEQRLIFDKPEDGVRKIVLATNMAETSITINDVVFVIDCGKAKETSYDALNNTPCLLP 678 (1009)
Q Consensus 599 ~~~~~~~~~~~~v~~lHs~l~~~er~~v~~~f~~G~~kVLVATniae~GIdIp~V~~VId~g~~k~~~yd~~~~~~~l~~ 678 (1009)
.. ++.+..++|+|.+..|..-+..|+.++..++|.|++|++|+|||...-|||+++|-
T Consensus 283 ~~-------g~~~s~iysslD~~aRk~~~~~F~~~k~~~lvvTdvaaRG~diplldnvinyd~p~--------------- 340 (529)
T KOG0337|consen 283 DF-------GGEGSDIYSSLDQEARKINGRDFRGRKTSILVVTDVAARGLDIPLLDNVINYDFPP--------------- 340 (529)
T ss_pred hc-------CCCccccccccChHhhhhccccccCCccceEEEehhhhccCCCccccccccccCCC---------------
Confidence 87 66677899999999999999999999999999999999999999999999977754
Q ss_pred cccCHHhHHhhhcccCCCC-CCcEEEecchh
Q 001817 679 SWISKAAARQRRGRAGRVQ-PGECYHLYPRY 708 (1009)
Q Consensus 679 ~~iS~as~~QR~GRAGR~~-~G~c~~Lys~~ 708 (1009)
+..-+.||.||+.|.+ .|..|.+....
T Consensus 341 ---~~klFvhRVgr~aragrtg~aYs~V~~~ 368 (529)
T KOG0337|consen 341 ---DDKLFVHRVGRVARAGRTGRAYSLVAST 368 (529)
T ss_pred ---CCceEEEEecchhhccccceEEEEEecc
Confidence 1223459999999986 69999987654
No 84
>PRK14701 reverse gyrase; Provisional
Probab=99.92 E-value=7.4e-24 Score=275.03 Aligned_cols=336 Identities=14% Similarity=0.092 Sum_probs=199.8
Q ss_pred HHhcChhhHHHHHhhcCCCCHHHHHHHHHHHHcCCeEEEEecCCCchhhhHHHHHHHHHHHHhcCCceEEEechhHHHHH
Q 001817 280 AWQESPEGQKMLEFRRSLPSYKERDALLKAISENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISA 359 (1009)
Q Consensus 280 ~~~~~~~~~~l~~~r~~LPi~~~q~~il~~l~~~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~IvvtqPrR~La 359 (1009)
.|..-.++.++++.-.....+..|.+++..+..+++++++||||||||+.+..+.+. . ... +.++++++||++|+
T Consensus 61 ~~~~~~~~~~~f~~~~G~~pt~iQ~~~i~~il~G~d~li~APTGsGKTl~~~~~al~-~--~~~--g~~aLVl~PTreLa 135 (1638)
T PRK14701 61 LWNEVEEFEEFFEKITGFEFWSIQKTWAKRILRGKSFSIVAPTGMGKSTFGAFIALF-L--ALK--GKKCYIILPTTLLV 135 (1638)
T ss_pred HHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHHH-H--Hhc--CCeEEEEECHHHHH
Confidence 344445555565542333455566777777889999999999999999843333222 1 112 34677777999999
Q ss_pred HHHHHHHHHHhCCcc--cceeeeeeee----------ccccCCCcEEEEEccHHHHHHHhcCCCCCCccEEEEeCCCcCC
Q 001817 360 MAVSERVAAERGEKL--GESVGYKVRL----------EGMKGRDTRLMFCTTGILLRRLLVDRSLRGVTHVIVDEIHERG 427 (1009)
Q Consensus 360 ~qva~rva~e~~~~~--g~~vGy~vr~----------e~~~~~~t~Iiv~T~g~Ll~~L~~~~~l~~is~IIIDEaHeR~ 427 (1009)
.|+++.+..... .. +..+.+-... +.......+|+|+|||.|.+.+..- ...++++|||||||+..
T Consensus 136 ~Qi~~~l~~l~~-~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPgrL~~~~~~l-~~~~i~~iVVDEAD~ml 213 (1638)
T PRK14701 136 KQTVEKIESFCE-KANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQFLARNFPEM-KHLKFDFIFVDDVDAFL 213 (1638)
T ss_pred HHHHHHHHHHHh-hcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCchhHHhHHHH-hhCCCCEEEEECceecc
Confidence 999999976432 22 1222111110 1112235799999999988765432 22679999999999631
Q ss_pred ---Cc-------chHHHHHHH----H---------------------HcccCC-CCc-EEEeccCCCH-HHHHhhhCCCC
Q 001817 428 ---MN-------EDFLLIVLK----E---------------------LLPRRP-ELR-LILMSATLNA-ELFSSYFGGAP 469 (1009)
Q Consensus 428 ---~~-------~d~ll~llk----~---------------------ll~~~~-~lk-vIlmSATl~~-~~~~~yf~~~p 469 (1009)
-+ .+|...+.. . .+...+ ..+ ++++|||++. .....+|...-
T Consensus 214 ~~~knid~~L~llGF~~e~~~~~~~il~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ll~~SAT~~~r~~~~~l~~~~l 293 (1638)
T PRK14701 214 KASKNIDRSLQLLGFYEEIIEKAWKIIYLKKQGNIEDAMEKREILNKEIEKIGNKIGCLIVASATGKAKGDRVKLYRELL 293 (1638)
T ss_pred ccccccchhhhcCCChHHHHHHHHHhhhcccccccchhhhhhhhhhhhhhhcCCCccEEEEEecCCCchhHHHHHhhcCe
Confidence 11 133222221 1 111112 234 5779999964 34445554322
Q ss_pred eeccCCccc---ceeeEehhhHHHHhhhccCcccccccchhhhHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhcchhhh
Q 001817 470 MLHIPGFTY---PVRAYFLENILEMTRYRLNTYNQIDDYGQEKSWKMQKQALALRKRKSSIASAVEDALEAADFREYSVQ 546 (1009)
Q Consensus 470 vi~i~g~~~---pv~~~yl~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~ 546 (1009)
.+.+..... .+...|...
T Consensus 294 ~f~v~~~~~~lr~i~~~yi~~----------------------------------------------------------- 314 (1638)
T PRK14701 294 GFEVGSGRSALRNIVDVYLNP----------------------------------------------------------- 314 (1638)
T ss_pred EEEecCCCCCCCCcEEEEEEC-----------------------------------------------------------
Confidence 222211110 001111000
Q ss_pred hhhccccCCCCCcchhhHHHHHHHHHhhcCCCcEEEEcCCHhH---HHHHHHHHHcCCCCCCCCCeEEEEecCCCCHHHH
Q 001817 547 TQQSLSCWNPDSIGFNLIEHVLCHIVKKERPGAVLVFMTGWDD---INSLKDQLQAHPLLGDPSRVLLLACHGSMASSEQ 623 (1009)
Q Consensus 547 ~~~~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~~~~---i~~l~~~L~~~~~~~~~~~~~v~~lHs~l~~~er 623 (1009)
+.+.. ..+..+++.. +..+||||++++. ++.+++.|... ++.+..+||+ |
T Consensus 315 -------------~~~~k-~~L~~ll~~~-g~~gIVF~~t~~~~e~ae~la~~L~~~-------Gi~a~~~h~~-----R 367 (1638)
T PRK14701 315 -------------EKIIK-EHVRELLKKL-GKGGLIFVPIDEGAEKAEEIEKYLLED-------GFKIELVSAK-----N 367 (1638)
T ss_pred -------------CHHHH-HHHHHHHHhC-CCCeEEEEeccccchHHHHHHHHHHHC-------CCeEEEecch-----H
Confidence 00000 1122333333 3578999999875 58999999986 7889999995 7
Q ss_pred HhhcCCCCCCceEEEEec----CccccccCCCC-eeEEEeCCCCccccccCCCCCCcccccccCHHhHHhhhcccCCCC-
Q 001817 624 RLIFDKPEDGVRKIVLAT----NMAETSITIND-VVFVIDCGKAKETSYDALNNTPCLLPSWISKAAARQRRGRAGRVQ- 697 (1009)
Q Consensus 624 ~~v~~~f~~G~~kVLVAT----niae~GIdIp~-V~~VId~g~~k~~~yd~~~~~~~l~~~~iS~as~~QR~GRAGR~~- 697 (1009)
..+++.|++|+.+||||| ++|++|||+|+ |+|||++|.||-. |........-...+. .....++.|||||.+
T Consensus 368 ~~~l~~F~~G~~~VLVaT~s~~gvaaRGIDiP~~Vryvi~~~~Pk~~-~~~e~~~~~~~~~~~-~~~~~~~~~~a~~~g~ 445 (1638)
T PRK14701 368 KKGFDLFEEGEIDYLIGVATYYGTLVRGLDLPERIRFAVFYGVPKFR-FRVDLEDPTIYRILG-LLSEILKIEEELKEGI 445 (1638)
T ss_pred HHHHHHHHcCCCCEEEEecCCCCeeEecCccCCccCEEEEeCCCCCC-cchhhcccchhhhhc-chHHHHHhhhhcccCC
Confidence 889999999999999999 59999999999 9999999999932 111100000000011 233557889999996
Q ss_pred CCcEEEecchhhh
Q 001817 698 PGECYHLYPRYVY 710 (1009)
Q Consensus 698 ~G~c~~Lys~~~~ 710 (1009)
++.|+..+....+
T Consensus 446 ~~~~~~~~~~~~~ 458 (1638)
T PRK14701 446 PIEGVLDVFPEDV 458 (1638)
T ss_pred cchhHHHhHHHHH
Confidence 5777655544433
No 85
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=99.91 E-value=7e-23 Score=261.44 Aligned_cols=287 Identities=19% Similarity=0.233 Sum_probs=177.2
Q ss_pred hhhHHHHHhhcCCCCHHHHHHHHHHHHcCCeEEEEecCCCchhhhHHHHHHHHHHHHhcCCceEEEechhHHHHHHHHHH
Q 001817 285 PEGQKMLEFRRSLPSYKERDALLKAISENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSE 364 (1009)
Q Consensus 285 ~~~~~l~~~r~~LPi~~~q~~il~~l~~~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~IvvtqPrR~La~qva~ 364 (1009)
.++.+.+........+..|...+..+..|++++++||||||||+ +.+++...+.. . ++++++++|||+||.|+++
T Consensus 65 ~~f~~~f~~~~g~~p~~iQ~~~i~~il~G~d~vi~ApTGsGKT~-f~l~~~~~l~~--~--g~~vLIL~PTreLa~Qi~~ 139 (1171)
T TIGR01054 65 KEFEEFFKKAVGSEPWSIQKMWAKRVLRGDSFAIIAPTGVGKTT-FGLAMSLFLAK--K--GKRCYIILPTTLLVIQVAE 139 (1171)
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHhCCCeEEEECCCCCCHHH-HHHHHHHHHHh--c--CCeEEEEeCHHHHHHHHHH
Confidence 33444555444555666667777778899999999999999997 44444443322 2 4567777799999999999
Q ss_pred HHHHHhCCcccc---eee-eeeee---------ccccCCCcEEEEEccHHHHHHHhcCCCCCCccEEEEeCCCcCC----
Q 001817 365 RVAAERGEKLGE---SVG-YKVRL---------EGMKGRDTRLMFCTTGILLRRLLVDRSLRGVTHVIVDEIHERG---- 427 (1009)
Q Consensus 365 rva~e~~~~~g~---~vG-y~vr~---------e~~~~~~t~Iiv~T~g~Ll~~L~~~~~l~~is~IIIDEaHeR~---- 427 (1009)
.+...... .+. .+| |.... +.....+.+|+|+|||.|.+.+..-. .++++|||||||+..
T Consensus 140 ~l~~l~~~-~~i~~~~i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~rL~~~~~~l~--~~~~~iVvDEaD~~L~~~k 216 (1171)
T TIGR01054 140 KISSLAEK-AGVGTVNIGAYHSRLPTKEKKEFMERIENGDFDILITTTMFLSKNYDELG--PKFDFIFVDDVDALLKASK 216 (1171)
T ss_pred HHHHHHHh-cCCceeeeeeecCCCCHHHHHHHHHHHhcCCCCEEEECHHHHHHHHHHhc--CCCCEEEEeChHhhhhccc
Confidence 88775421 111 111 10000 11122358999999999988765321 189999999999531
Q ss_pred ----------CcchHHHHHHHH------------------Hccc-CCCCc--EEEeccCC-CHHHHHhhhCCCCeeccCC
Q 001817 428 ----------MNEDFLLIVLKE------------------LLPR-RPELR--LILMSATL-NAELFSSYFGGAPMLHIPG 475 (1009)
Q Consensus 428 ----------~~~d~ll~llk~------------------ll~~-~~~lk--vIlmSATl-~~~~~~~yf~~~pvi~i~g 475 (1009)
...+.+...++. ++.. ....| ++++|||. +...-..+|...-.+.+..
T Consensus 217 ~vd~il~llGF~~e~i~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~li~~SAT~~p~~~~~~l~r~ll~~~v~~ 296 (1171)
T TIGR01054 217 NVDKLLKLLGFSEELIEKAWKLIRLRLKLYRALHAKKRLELLEAIPGKKRGCLIVSSATGRPRGKRAKLFRELLGFEVGG 296 (1171)
T ss_pred cHHHHHHHcCCCHHHHHHHHHHhhhccccchHHHHHHHHHHHHhhhhccCcEEEEEeCCCCccccHHHHcccccceEecC
Confidence 111111111110 0111 12233 67789995 3322112332211111111
Q ss_pred ccc---ceeeEehhhHHHHhhhccCcccccccchhhhHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhcchhhhhhhccc
Q 001817 476 FTY---PVRAYFLENILEMTRYRLNTYNQIDDYGQEKSWKMQKQALALRKRKSSIASAVEDALEAADFREYSVQTQQSLS 552 (1009)
Q Consensus 476 ~~~---pv~~~yl~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~l~ 552 (1009)
... .+...|...
T Consensus 297 ~~~~~r~I~~~~~~~----------------------------------------------------------------- 311 (1171)
T TIGR01054 297 GSDTLRNVVDVYVED----------------------------------------------------------------- 311 (1171)
T ss_pred ccccccceEEEEEec-----------------------------------------------------------------
Confidence 100 011111000
Q ss_pred cCCCCCcchhhHHHHHHHHHhhcCCCcEEEEcCCH---hHHHHHHHHHHcCCCCCCCCCeEEEEecCCCCHHHHHhhcCC
Q 001817 553 CWNPDSIGFNLIEHVLCHIVKKERPGAVLVFMTGW---DDINSLKDQLQAHPLLGDPSRVLLLACHGSMASSEQRLIFDK 629 (1009)
Q Consensus 553 ~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~~---~~i~~l~~~L~~~~~~~~~~~~~v~~lHs~l~~~er~~v~~~ 629 (1009)
. +. ...+..+++.. ...+||||++. +.++.+++.|... ++.+..+||+++. .+++.
T Consensus 312 ----~----~~-~~~L~~ll~~l-~~~~IVFv~t~~~~~~a~~l~~~L~~~-------g~~a~~lhg~~~~----~~l~~ 370 (1171)
T TIGR01054 312 ----E----DL-KETLLEIVKKL-GTGGIVYVSIDYGKEKAEEIAEFLENH-------GVKAVAYHATKPK----EDYEK 370 (1171)
T ss_pred ----c----cH-HHHHHHHHHHc-CCCEEEEEeccccHHHHHHHHHHHHhC-------CceEEEEeCCCCH----HHHHH
Confidence 0 00 01122333332 35789999998 9999999999886 7789999999972 68899
Q ss_pred CCCCceEEEEe----cCccccccCCCC-eeEEEeCCCCccc
Q 001817 630 PEDGVRKIVLA----TNMAETSITIND-VVFVIDCGKAKET 665 (1009)
Q Consensus 630 f~~G~~kVLVA----Tniae~GIdIp~-V~~VId~g~~k~~ 665 (1009)
|++|+++|||| |+++++|||||+ |+|||++|.|+.+
T Consensus 371 Fr~G~~~vLVata~~tdv~aRGIDip~~V~~vI~~~~P~~~ 411 (1171)
T TIGR01054 371 FAEGEIDVLIGVASYYGTLVRGLDLPERVRYAVFLGVPKFK 411 (1171)
T ss_pred HHcCCCCEEEEeccccCcccccCCCCccccEEEEECCCCEE
Confidence 99999999999 599999999999 8999999999863
No 86
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=99.90 E-value=3.6e-22 Score=233.94 Aligned_cols=326 Identities=18% Similarity=0.182 Sum_probs=196.6
Q ss_pred cCCCCHHHHHHHHHHHHc----CCeEEEEecCCCchhhhHHHHHHHHHHHHhcCCceEEEechhHHHHHHHHHHHHHHHh
Q 001817 295 RSLPSYKERDALLKAISE----NQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAER 370 (1009)
Q Consensus 295 ~~LPi~~~q~~il~~l~~----~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~IvvtqPrR~La~qva~rva~e~ 370 (1009)
.......+|++.++++.+ ++..+|++|||+|||..+...+.+. +. .++|++||++|+.|++++..+.+
T Consensus 33 ~~~~lr~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~va~~~~~~~------~~--~~Lvlv~~~~L~~Qw~~~~~~~~ 104 (442)
T COG1061 33 FEFELRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAAEAIAEL------KR--STLVLVPTKELLDQWAEALKKFL 104 (442)
T ss_pred cCCCCcHHHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHHHHh------cC--CEEEEECcHHHHHHHHHHHHHhc
Confidence 455577888888999888 8999999999999997777665431 12 26666699999999998888777
Q ss_pred CCcccceeeeeeeeccccCCCcEEEEEccHHHHHH-HhcCCCCCCccEEEEeCCCcCCCcchHHHHHHHHHcccCCCCcE
Q 001817 371 GEKLGESVGYKVRLEGMKGRDTRLMFCTTGILLRR-LLVDRSLRGVTHVIVDEIHERGMNEDFLLIVLKELLPRRPELRL 449 (1009)
Q Consensus 371 ~~~~g~~vGy~vr~e~~~~~~t~Iiv~T~g~Ll~~-L~~~~~l~~is~IIIDEaHeR~~~~d~ll~llk~ll~~~~~lkv 449 (1009)
+.. ..+|........... ..|+|+|.+.+.+. .......+.+++||+||||+ ...+....+...+....+ +
T Consensus 105 ~~~--~~~g~~~~~~~~~~~-~~i~vat~qtl~~~~~l~~~~~~~~~liI~DE~Hh--~~a~~~~~~~~~~~~~~~---~ 176 (442)
T COG1061 105 LLN--DEIGIYGGGEKELEP-AKVTVATVQTLARRQLLDEFLGNEFGLIIFDEVHH--LPAPSYRRILELLSAAYP---R 176 (442)
T ss_pred CCc--cccceecCceeccCC-CcEEEEEhHHHhhhhhhhhhcccccCEEEEEcccc--CCcHHHHHHHHhhhcccc---e
Confidence 653 122211111111111 47999999999886 22222444799999999997 444433334444333322 9
Q ss_pred EEeccCCCH---HHHHhhhC--CCCeeccC-------CcccceeeEehhhHHHHhhhccCcccccccchhhhHHHHHHHH
Q 001817 450 ILMSATLNA---ELFSSYFG--GAPMLHIP-------GFTYPVRAYFLENILEMTRYRLNTYNQIDDYGQEKSWKMQKQA 517 (1009)
Q Consensus 450 IlmSATl~~---~~~~~yf~--~~pvi~i~-------g~~~pv~~~yl~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 517 (1009)
++||||+.. .....++. +..+..++ |..-|......... ...+......+..
T Consensus 177 LGLTATp~R~D~~~~~~l~~~~g~~vy~~~~~~li~~g~Lap~~~~~i~~~----------------~t~~~~~~~~~~~ 240 (442)
T COG1061 177 LGLTATPEREDGGRIGDLFDLIGPIVYEVSLKELIDEGYLAPYKYVEIKVT----------------LTEDEEREYAKES 240 (442)
T ss_pred eeeccCceeecCCchhHHHHhcCCeEeecCHHHHHhCCCccceEEEEEEec----------------cchHHHHHhhhhh
Confidence 999999732 22222222 11111111 22222222111100 0000000000000
Q ss_pred HHHHhh--hhhHHHHHHHHHHHhhhcchhhhhhhccccCCCCCcchhhHHHHHHHHHhhc-CCCcEEEEcCCHhHHHHHH
Q 001817 518 LALRKR--KSSIASAVEDALEAADFREYSVQTQQSLSCWNPDSIGFNLIEHVLCHIVKKE-RPGAVLVFMTGWDDINSLK 594 (1009)
Q Consensus 518 ~~~~~~--~~~~~~~v~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~~-~~g~iLVFl~~~~~i~~l~ 594 (1009)
...... .... ......... ...........+..+.... ...+++||+....++..++
T Consensus 241 ~~~~~~~~~~~~-~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~lif~~~~~~a~~i~ 300 (442)
T COG1061 241 ARFRELLRARGT-LRAENEARR-------------------IAIASERKIAAVRGLLLKHARGDKTLIFASDVEHAYEIA 300 (442)
T ss_pred hhhhhhhhhhhh-hhHHHHHHH-------------------HhhccHHHHHHHHHHHHHhcCCCcEEEEeccHHHHHHHH
Confidence 000000 0000 000000000 0000011112222222222 4569999999999999999
Q ss_pred HHHHcCCCCCCCCCeEEEEecCCCCHHHHHhhcCCCCCCceEEEEecCccccccCCCCeeEEEeCCCCccccccCCCCCC
Q 001817 595 DQLQAHPLLGDPSRVLLLACHGSMASSEQRLIFDKPEDGVRKIVLATNMAETSITINDVVFVIDCGKAKETSYDALNNTP 674 (1009)
Q Consensus 595 ~~L~~~~~~~~~~~~~v~~lHs~l~~~er~~v~~~f~~G~~kVLVATniae~GIdIp~V~~VId~g~~k~~~yd~~~~~~ 674 (1009)
..+... +. +..+.|..+..+|..+++.|+.|.+++|+++.++.+|+|+|++.++|...-.+
T Consensus 301 ~~~~~~-------~~-~~~it~~t~~~eR~~il~~fr~g~~~~lv~~~vl~EGvDiP~~~~~i~~~~t~----------- 361 (442)
T COG1061 301 KLFLAP-------GI-VEAITGETPKEEREAILERFRTGGIKVLVTVKVLDEGVDIPDADVLIILRPTG----------- 361 (442)
T ss_pred HHhcCC-------Cc-eEEEECCCCHHHHHHHHHHHHcCCCCEEEEeeeccceecCCCCcEEEEeCCCC-----------
Confidence 999765 33 77889999999999999999999999999999999999999999998754444
Q ss_pred cccccccCHHhHHhhhcccCCCCC
Q 001817 675 CLLPSWISKAAARQRRGRAGRVQP 698 (1009)
Q Consensus 675 ~l~~~~iS~as~~QR~GRAGR~~~ 698 (1009)
|+..|.||+||.-|..+
T Consensus 362 -------S~~~~~Q~lGR~LR~~~ 378 (442)
T COG1061 362 -------SRRLFIQRLGRGLRPAE 378 (442)
T ss_pred -------cHHHHHHHhhhhccCCC
Confidence 88899999999999633
No 87
>PRK05580 primosome assembly protein PriA; Validated
Probab=99.90 E-value=3.8e-22 Score=244.68 Aligned_cols=357 Identities=19% Similarity=0.217 Sum_probs=200.4
Q ss_pred CCHHHHHHHHHHHHc---CCeEEEEecCCCchhhhHHHHHHHHHHHHhcCCceEEEechhHHHHHHHHHHHHHHHhCCcc
Q 001817 298 PSYKERDALLKAISE---NQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERGEKL 374 (1009)
Q Consensus 298 Pi~~~q~~il~~l~~---~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~IvvtqPrR~La~qva~rva~e~~~~~ 374 (1009)
..+..|+++++.+.+ ++++++.|+||||||.++..++.+.+ . . +..+++++|+++|+.|+.+++.+.+|..+
T Consensus 144 ~Lt~~Q~~ai~~i~~~~~~~~~Ll~~~TGSGKT~v~l~~i~~~l-~--~--g~~vLvLvPt~~L~~Q~~~~l~~~fg~~v 218 (679)
T PRK05580 144 TLNPEQAAAVEAIRAAAGFSPFLLDGVTGSGKTEVYLQAIAEVL-A--Q--GKQALVLVPEIALTPQMLARFRARFGAPV 218 (679)
T ss_pred CCCHHHHHHHHHHHhccCCCcEEEECCCCChHHHHHHHHHHHHH-H--c--CCeEEEEeCcHHHHHHHHHHHHHHhCCCE
Confidence 345566677777766 47899999999999998887766544 2 2 24577777999999999999998887655
Q ss_pred cceeeeeeee------ccccCCCcEEEEEccHHHHHHHhcCCCCCCccEEEEeCCCcCCCcchH----HHHHHHHHcccC
Q 001817 375 GESVGYKVRL------EGMKGRDTRLMFCTTGILLRRLLVDRSLRGVTHVIVDEIHERGMNEDF----LLIVLKELLPRR 444 (1009)
Q Consensus 375 g~~vGy~vr~------e~~~~~~t~Iiv~T~g~Ll~~L~~~~~l~~is~IIIDEaHeR~~~~d~----ll~llk~ll~~~ 444 (1009)
....|..... ........+|+|+|++.+. ..+.++++|||||+|+-+...+- -..-+.......
T Consensus 219 ~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal~------~p~~~l~liVvDEeh~~s~~~~~~p~y~~r~va~~ra~~ 292 (679)
T PRK05580 219 AVLHSGLSDGERLDEWRKAKRGEAKVVIGARSALF------LPFKNLGLIIVDEEHDSSYKQQEGPRYHARDLAVVRAKL 292 (679)
T ss_pred EEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHhc------ccccCCCEEEEECCCccccccCcCCCCcHHHHHHHHhhc
Confidence 4444321111 1112345799999998764 24788999999999964433220 001111222344
Q ss_pred CCCcEEEeccCCCHHHHHhhhCC-CCeeccCCcc----cceeeEehhhHHHHhhhccCcccccccchhhhHHHHHHHHHH
Q 001817 445 PELRLILMSATLNAELFSSYFGG-APMLHIPGFT----YPVRAYFLENILEMTRYRLNTYNQIDDYGQEKSWKMQKQALA 519 (1009)
Q Consensus 445 ~~lkvIlmSATl~~~~~~~yf~~-~pvi~i~g~~----~pv~~~yl~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 519 (1009)
.+.++|++|||+..+.+.....| ...+..+.+. .| .+...+ ....... .....
T Consensus 293 ~~~~~il~SATps~~s~~~~~~g~~~~~~l~~r~~~~~~p-~v~~id-~~~~~~~--~~~~~------------------ 350 (679)
T PRK05580 293 ENIPVVLGSATPSLESLANAQQGRYRLLRLTKRAGGARLP-EVEIID-MRELLRG--ENGSF------------------ 350 (679)
T ss_pred cCCCEEEEcCCCCHHHHHHHhccceeEEEeccccccCCCC-eEEEEe-chhhhhh--cccCC------------------
Confidence 67889999999988776654322 1222232221 22 111111 0000000 00000
Q ss_pred HHhhhhhHHHHHHHHHHHh-------hhcchhhhhhhccccCCCCCcch--hh-----HHHHHHHHHhhcCC--------
Q 001817 520 LRKRKSSIASAVEDALEAA-------DFREYSVQTQQSLSCWNPDSIGF--NL-----IEHVLCHIVKKERP-------- 577 (1009)
Q Consensus 520 ~~~~~~~~~~~v~~~l~~~-------~~~~~~~~~~~~l~~~~~~~i~~--~l-----i~~ll~~i~~~~~~-------- 577 (1009)
-...+.+.+++.+... ...+|..........+...+... .+ ...+.++.|.....
T Consensus 351 ---ls~~l~~~i~~~l~~g~qvll~~nrrGy~~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~C 427 (679)
T PRK05580 351 ---LSPPLLEAIKQRLERGEQVLLFLNRRGYAPFLLCRDCGWVAECPHCDASLTLHRFQRRLRCHHCGYQEPIPKACPEC 427 (679)
T ss_pred ---CCHHHHHHHHHHHHcCCeEEEEEcCCCCCCceEhhhCcCccCCCCCCCceeEECCCCeEECCCCcCCCCCCCCCCCC
Confidence 0011122223322211 11111111000000000000000 00 01122333322211
Q ss_pred CcEEEEcCCHhHHHHHHHHHHcCCCCCCCCCeEEEEecCCCC--HHHHHhhcCCCCCCceEEEEecCccccccCCCCeeE
Q 001817 578 GAVLVFMTGWDDINSLKDQLQAHPLLGDPSRVLLLACHGSMA--SSEQRLIFDKPEDGVRKIVLATNMAETSITINDVVF 655 (1009)
Q Consensus 578 g~iLVFl~~~~~i~~l~~~L~~~~~~~~~~~~~v~~lHs~l~--~~er~~v~~~f~~G~~kVLVATniae~GIdIp~V~~ 655 (1009)
|. ..|......++++++.|.+. + ++..+..+|+++. .++++.+++.|++|+.+|||+|+++++|+|+|+|+.
T Consensus 428 g~-~~l~~~g~G~e~~~e~l~~~--f---p~~~v~~~~~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~iakG~d~p~v~l 501 (679)
T PRK05580 428 GS-TDLVPVGPGTERLEEELAEL--F---PEARILRIDRDTTRRKGALEQLLAQFARGEADILIGTQMLAKGHDFPNVTL 501 (679)
T ss_pred cC-CeeEEeeccHHHHHHHHHHh--C---CCCcEEEEeccccccchhHHHHHHHHhcCCCCEEEEChhhccCCCCCCcCE
Confidence 01 12333334567777777764 1 2456889999986 467889999999999999999999999999999988
Q ss_pred E--EeCCCCccccccCCCCCCcccccccCHHhHHhhhcccCCC-CCCcEEEe
Q 001817 656 V--IDCGKAKETSYDALNNTPCLLPSWISKAAARQRRGRAGRV-QPGECYHL 704 (1009)
Q Consensus 656 V--Id~g~~k~~~yd~~~~~~~l~~~~iS~as~~QR~GRAGR~-~~G~c~~L 704 (1009)
| +|. |...+.+.+....-.-..+.|++|||||. .+|.|+..
T Consensus 502 V~il~a--------D~~l~~pdfra~Er~~~~l~q~~GRagR~~~~g~viiq 545 (679)
T PRK05580 502 VGVLDA--------DLGLFSPDFRASERTFQLLTQVAGRAGRAEKPGEVLIQ 545 (679)
T ss_pred EEEEcC--------chhccCCccchHHHHHHHHHHHHhhccCCCCCCEEEEE
Confidence 7 553 33333333332222346788999999996 56888854
No 88
>PRK09694 helicase Cas3; Provisional
Probab=99.89 E-value=3.9e-22 Score=246.36 Aligned_cols=325 Identities=22% Similarity=0.242 Sum_probs=186.0
Q ss_pred CCCHHHHHHHHHHHHcCCeEEEEecCCCchhhhHHHHHHHHHHHHhcCCceEEEechhHHHHHHHHHHHHHHHh----C-
Q 001817 297 LPSYKERDALLKAISENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAER----G- 371 (1009)
Q Consensus 297 LPi~~~q~~il~~l~~~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~IvvtqPrR~La~qva~rva~e~----~- 371 (1009)
...++.|+.+.....++..+||.||||+|||.++..++.. +.. .+....|++..||+++++++++|+.+.. +
T Consensus 285 ~~p~p~Q~~~~~~~~~pgl~ileApTGsGKTEAAL~~A~~-l~~--~~~~~gi~~aLPT~Atan~m~~Rl~~~~~~~f~~ 361 (878)
T PRK09694 285 YQPRQLQTLVDALPLQPGLTIIEAPTGSGKTEAALAYAWR-LID--QGLADSIIFALPTQATANAMLSRLEALASKLFPS 361 (878)
T ss_pred CCChHHHHHHHhhccCCCeEEEEeCCCCCHHHHHHHHHHH-HHH--hCCCCeEEEECcHHHHHHHHHHHHHHHHHHhcCC
Confidence 3456777776555445788999999999999888765543 333 2334578888899999999999997532 2
Q ss_pred Ccccceeeeee---ee---------------------cc-----ccCCCcEEEEEccHHHHHHHhcCC--CCCCc----c
Q 001817 372 EKLGESVGYKV---RL---------------------EG-----MKGRDTRLMFCTTGILLRRLLVDR--SLRGV----T 416 (1009)
Q Consensus 372 ~~~g~~vGy~v---r~---------------------e~-----~~~~~t~Iiv~T~g~Ll~~L~~~~--~l~~i----s 416 (1009)
..+....|... .+ +. +..--..|+|||...++......+ .+..+ +
T Consensus 362 ~~v~L~Hg~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~kr~llapi~V~TiDQlL~a~l~~kh~~lR~~~La~s 441 (878)
T PRK09694 362 PNLILAHGNSRFNHLFQSLKSRAATEQGQEEAWVQCCEWLSQSNKRVFLGQIGVCTIDQVLISVLPVKHRFIRGFGLGRS 441 (878)
T ss_pred CceEeecCcchhhhhhhhhhcccccccccchhhhHHHHHHhhhhhhhhcCCEEEcCHHHHHHHHHccchHHHHHHhhccC
Confidence 12222222110 00 00 000126899999988775554432 23322 5
Q ss_pred EEEEeCCCcCCCcch-HHHHHHHHHcccCCCCcEEEeccCCCHHHHHhhh---CCCCeeccCCcccceeeEehhhHHHHh
Q 001817 417 HVIVDEIHERGMNED-FLLIVLKELLPRRPELRLILMSATLNAELFSSYF---GGAPMLHIPGFTYPVRAYFLENILEMT 492 (1009)
Q Consensus 417 ~IIIDEaHeR~~~~d-~ll~llk~ll~~~~~lkvIlmSATl~~~~~~~yf---~~~pvi~i~g~~~pv~~~yl~~i~~~~ 492 (1009)
+|||||||.....+. ++..+++.+.. ...++|+||||++...-.+++ ++.... .....||.-...... ...
T Consensus 442 vvIiDEVHAyD~ym~~lL~~~L~~l~~--~g~~vIllSATLP~~~r~~L~~a~~~~~~~-~~~~~YPlvt~~~~~--~~~ 516 (878)
T PRK09694 442 VLIVDEVHAYDAYMYGLLEAVLKAQAQ--AGGSVILLSATLPATLKQKLLDTYGGHDPV-ELSSAYPLITWRGVN--GAQ 516 (878)
T ss_pred eEEEechhhCCHHHHHHHHHHHHHHHh--cCCcEEEEeCCCCHHHHHHHHHHhcccccc-ccccccccccccccc--cce
Confidence 899999997544333 33334443322 356799999999865433332 221110 111123321110000 000
Q ss_pred hhccCcccccccchhhhHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhcchhhhhhhccccCC-CCCcchhhHHHHHHHH
Q 001817 493 RYRLNTYNQIDDYGQEKSWKMQKQALALRKRKSSIASAVEDALEAADFREYSVQTQQSLSCWN-PDSIGFNLIEHVLCHI 571 (1009)
Q Consensus 493 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~l~~~~-~~~i~~~li~~ll~~i 571 (1009)
....... . ........-.+..+. ..... ...++..+
T Consensus 517 ~~~~~~~-------~---------------------------------~~~~~~~~v~v~~~~~~~~~~---~~~~l~~i 553 (878)
T PRK09694 517 RFDLSAH-------P---------------------------------EQLPARFTIQLEPICLADMLP---DLTLLQRM 553 (878)
T ss_pred eeecccc-------c---------------------------------cccCcceEEEEEeeccccccC---HHHHHHHH
Confidence 0000000 0 000000000000000 00000 01222222
Q ss_pred Hhh-cCCCcEEEEcCCHhHHHHHHHHHHcCCCCCCCCCeEEEEecCCCCHHHHH----hhcCCC-CCCc---eEEEEecC
Q 001817 572 VKK-ERPGAVLVFMTGWDDINSLKDQLQAHPLLGDPSRVLLLACHGSMASSEQR----LIFDKP-EDGV---RKIVLATN 642 (1009)
Q Consensus 572 ~~~-~~~g~iLVFl~~~~~i~~l~~~L~~~~~~~~~~~~~v~~lHs~l~~~er~----~v~~~f-~~G~---~kVLVATn 642 (1009)
.+. ..++++|||+||++.++.+++.|++.. + ....+..+||+++..+|+ ++++.| ++|+ .+|||||+
T Consensus 554 ~~~~~~g~~vLVf~NTV~~Aq~ly~~L~~~~--~--~~~~v~llHsrf~~~dR~~~E~~vl~~fgk~g~r~~~~ILVaTQ 629 (878)
T PRK09694 554 IAAANAGAQVCLICNLVDDAQKLYQRLKELN--N--TQVDIDLFHARFTLNDRREKEQRVIENFGKNGKRNQGRILVATQ 629 (878)
T ss_pred HHHHhcCCEEEEEECCHHHHHHHHHHHHhhC--C--CCceEEEEeCCCCHHHHHHHHHHHHHHHHhcCCcCCCeEEEECc
Confidence 222 245789999999999999999998641 1 135689999999999984 566777 6666 47999999
Q ss_pred ccccccCCCCeeEEEeCCCCccccccCCCCCCcccccccCHHhHHhhhcccCCCC
Q 001817 643 MAETSITINDVVFVIDCGKAKETSYDALNNTPCLLPSWISKAAARQRRGRAGRVQ 697 (1009)
Q Consensus 643 iae~GIdIp~V~~VId~g~~k~~~yd~~~~~~~l~~~~iS~as~~QR~GRAGR~~ 697 (1009)
++|+|||| +++++|... .+..+++||+||+||.+
T Consensus 630 ViE~GLDI-d~DvlItdl--------------------aPidsLiQRaGR~~R~~ 663 (878)
T PRK09694 630 VVEQSLDL-DFDWLITQL--------------------CPVDLLFQRLGRLHRHH 663 (878)
T ss_pred chhheeec-CCCeEEECC--------------------CCHHHHHHHHhccCCCC
Confidence 99999999 578887521 24568999999999984
No 89
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=99.89 E-value=3.7e-21 Score=229.18 Aligned_cols=106 Identities=24% Similarity=0.228 Sum_probs=91.0
Q ss_pred CCcEEEEcCCHhHHHHHHHHHHcCCCCCCCCCeEEEEecCCCCHHHHHhhcCCCCCCceEEEEecCccccccCCC---Ce
Q 001817 577 PGAVLVFMTGWDDINSLKDQLQAHPLLGDPSRVLLLACHGSMASSEQRLIFDKPEDGVRKIVLATNMAETSITIN---DV 653 (1009)
Q Consensus 577 ~g~iLVFl~~~~~i~~l~~~L~~~~~~~~~~~~~v~~lHs~l~~~er~~v~~~f~~G~~kVLVATniae~GIdIp---~V 653 (1009)
..++||||++.+.++.+++.|... ++.+..+||.++..++..+...+.. ..|+||||+|++|+||+ +|
T Consensus 473 ~~pvLIft~t~~~se~L~~~L~~~-------gi~~~~Lhg~~~~rE~~ii~~ag~~--g~VlVATdmAgRGtDI~l~~~V 543 (656)
T PRK12898 473 GRPVLVGTRSVAASERLSALLREA-------GLPHQVLNAKQDAEEAAIVARAGQR--GRITVATNMAGRGTDIKLEPGV 543 (656)
T ss_pred CCCEEEEeCcHHHHHHHHHHHHHC-------CCCEEEeeCCcHHHHHHHHHHcCCC--CcEEEEccchhcccCcCCccch
Confidence 468999999999999999999986 7779999999877776666555544 46999999999999999 77
Q ss_pred e-----EEEeCCCCccccccCCCCCCcccccccCHHhHHhhhcccCCCC-CCcEEEecchhh
Q 001817 654 V-----FVIDCGKAKETSYDALNNTPCLLPSWISKAAARQRRGRAGRVQ-PGECYHLYPRYV 709 (1009)
Q Consensus 654 ~-----~VId~g~~k~~~yd~~~~~~~l~~~~iS~as~~QR~GRAGR~~-~G~c~~Lys~~~ 709 (1009)
. +||++++|. |...|.||+||+||.| +|.|+.+++.++
T Consensus 544 ~~~GGLhVI~~d~P~------------------s~r~y~hr~GRTGRqG~~G~s~~~is~eD 587 (656)
T PRK12898 544 AARGGLHVILTERHD------------------SARIDRQLAGRCGRQGDPGSYEAILSLED 587 (656)
T ss_pred hhcCCCEEEEcCCCC------------------CHHHHHHhcccccCCCCCeEEEEEechhH
Confidence 6 999988887 7778999999999996 699999988643
No 90
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=99.89 E-value=2.9e-21 Score=232.47 Aligned_cols=106 Identities=21% Similarity=0.244 Sum_probs=92.2
Q ss_pred cCCCcEEEEcCCHhHHHHHHHHHHcCCCCCCCCCeEEEEecCCCCHHHHHhhcCCCCCCceEEEEecCccccccCCC---
Q 001817 575 ERPGAVLVFMTGWDDINSLKDQLQAHPLLGDPSRVLLLACHGSMASSEQRLIFDKPEDGVRKIVLATNMAETSITIN--- 651 (1009)
Q Consensus 575 ~~~g~iLVFl~~~~~i~~l~~~L~~~~~~~~~~~~~v~~lHs~l~~~er~~v~~~f~~G~~kVLVATniae~GIdIp--- 651 (1009)
....++||||++.+.++.+...|... ++.+..+||.+..+++..+..+++.| .|+||||+|++|+|||
T Consensus 422 ~~~~pvLIft~s~~~se~ls~~L~~~-------gi~~~~L~a~~~~~E~~ii~~ag~~g--~VlIATdmAgRGtDI~l~~ 492 (762)
T TIGR03714 422 ETGQPVLLITGSVEMSEIYSELLLRE-------GIPHNLLNAQNAAKEAQIIAEAGQKG--AVTVATSMAGRGTDIKLGK 492 (762)
T ss_pred hCCCCEEEEECcHHHHHHHHHHHHHC-------CCCEEEecCCChHHHHHHHHHcCCCC--eEEEEccccccccCCCCCc
Confidence 34679999999999999999999886 67788999999999999999888887 7999999999999999
Q ss_pred ------CeeEEEeCCCCccccccCCCCCCcccccccCHHhHHhhhcccCCCC-CCcEEEecchh
Q 001817 652 ------DVVFVIDCGKAKETSYDALNNTPCLLPSWISKAAARQRRGRAGRVQ-PGECYHLYPRY 708 (1009)
Q Consensus 652 ------~V~~VId~g~~k~~~yd~~~~~~~l~~~~iS~as~~QR~GRAGR~~-~G~c~~Lys~~ 708 (1009)
++.+|++...|. .+.. .||+|||||.| +|.++.+++.+
T Consensus 493 ~v~~~GGL~vIit~~~ps------------------~rid-~qr~GRtGRqG~~G~s~~~is~e 537 (762)
T TIGR03714 493 GVAELGGLAVIGTERMEN------------------SRVD-LQLRGRSGRQGDPGSSQFFVSLE 537 (762)
T ss_pred cccccCCeEEEEecCCCC------------------cHHH-HHhhhcccCCCCceeEEEEEccc
Confidence 999999966664 2333 79999999996 69999988764
No 91
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.89 E-value=3e-22 Score=217.22 Aligned_cols=323 Identities=20% Similarity=0.190 Sum_probs=204.8
Q ss_pred CCCHHHHHHHHHHHHcCCeEEEEecCCCchhhhHHHHHHHHHHHHhcCCceEEEechhHHHHHHHHHHHHHHHhCCcccc
Q 001817 297 LPSYKERDALLKAISENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERGEKLGE 376 (1009)
Q Consensus 297 LPi~~~q~~il~~l~~~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~IvvtqPrR~La~qva~rva~e~~~~~g~ 376 (1009)
+...-|.+++.-++..+++|.|+.|||+|||+++.++.|-. .+..||+.|..+|.......+... ...+..
T Consensus 20 FKs~LQE~A~~c~VK~k~DVyVsMPTGaGKSLCyQLPaL~~--------~gITIV~SPLiALIkDQiDHL~~L-KVp~~S 90 (641)
T KOG0352|consen 20 FKSRLQEQAINCIVKRKCDVYVSMPTGAGKSLCYQLPALVH--------GGITIVISPLIALIKDQIDHLKRL-KVPCES 90 (641)
T ss_pred hcChHHHHHHHHHHhccCcEEEeccCCCchhhhhhchHHHh--------CCeEEEehHHHHHHHHHHHHHHhc-CCchhH
Confidence 44556778888889999999999999999999998887641 125566679999987766665331 111111
Q ss_pred e---eeeeeee----c-cccCCCcEEEEEccHHH--------HHHHhcCCCCCCccEEEEeCCCcCC-CcchHHHHH--H
Q 001817 377 S---VGYKVRL----E-GMKGRDTRLMFCTTGIL--------LRRLLVDRSLRGVTHVIVDEIHERG-MNEDFLLIV--L 437 (1009)
Q Consensus 377 ~---vGy~vr~----e-~~~~~~t~Iiv~T~g~L--------l~~L~~~~~l~~is~IIIDEaHeR~-~~~d~ll~l--l 437 (1009)
. ..-..|. + .....++.++|.||++. |+.|. .-.-++++|+||||+-+ +.-||...+ |
T Consensus 91 LNSKlSt~ER~ri~~DL~~ekp~~K~LYITPE~AAt~~FQ~lLn~L~---~r~~L~Y~vVDEAHCVSQWGHDFRPDYL~L 167 (641)
T KOG0352|consen 91 LNSKLSTVERSRIMGDLAKEKPTIKMLYITPEGAATDGFQKLLNGLA---NRDVLRYIVVDEAHCVSQWGHDFRPDYLTL 167 (641)
T ss_pred hcchhhHHHHHHHHHHHHhcCCceeEEEEchhhhhhhhHHHHHHHHh---hhceeeeEEechhhhHhhhccccCcchhhh
Confidence 0 0000010 0 11235789999999763 33333 33456899999999632 223333222 2
Q ss_pred HHHcccCCCCcEEEeccCCCHHHHHhhhC----CCCeeccCCcccceeeEehhhHHHHhhhccCcccccccchhhhHHHH
Q 001817 438 KELLPRRPELRLILMSATLNAELFSSYFG----GAPMLHIPGFTYPVRAYFLENILEMTRYRLNTYNQIDDYGQEKSWKM 513 (1009)
Q Consensus 438 k~ll~~~~~lkvIlmSATl~~~~~~~yf~----~~pvi~i~g~~~pv~~~yl~~i~~~~~~~~~~~~~i~~~~~~~~~~~ 513 (1009)
..+....++..-+.++||.+++.-.+.|. ..|+-......|.-..+|-...
T Consensus 168 G~LRS~~~~vpwvALTATA~~~VqEDi~~qL~L~~PVAiFkTP~FR~NLFYD~~~------------------------- 222 (641)
T KOG0352|consen 168 GSLRSVCPGVPWVALTATANAKVQEDIAFQLKLRNPVAIFKTPTFRDNLFYDNHM------------------------- 222 (641)
T ss_pred hhHHhhCCCCceEEeecccChhHHHHHHHHHhhcCcHHhccCcchhhhhhHHHHH-------------------------
Confidence 33445667888999999997764333221 1222222222222222221000
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHhhhcchhhhhhhccccCCCCCcchhhHHHHHHHHHhhcCCCcEEEEcCCHhHHHHH
Q 001817 514 QKQALALRKRKSSIASAVEDALEAADFREYSVQTQQSLSCWNPDSIGFNLIEHVLCHIVKKERPGAVLVFMTGWDDINSL 593 (1009)
Q Consensus 514 ~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~~~~i~~l 593 (1009)
.+.+++.+.. ..++.... |.+ +.. ..-..+.-.|..||+|.|+++++.+
T Consensus 223 --------------K~~I~D~~~~--LaDF~~~~---LG~--~~~----------~~~~~K~~~GCGIVYCRTR~~cEq~ 271 (641)
T KOG0352|consen 223 --------------KSFITDCLTV--LADFSSSN---LGK--HEK----------ASQNKKTFTGCGIVYCRTRNECEQV 271 (641)
T ss_pred --------------HHHhhhHhHh--HHHHHHHh---cCC--hhh----------hhcCCCCcCcceEEEeccHHHHHHH
Confidence 0011111000 00000000 000 000 0000123457899999999999999
Q ss_pred HHHHHcCCCCCCCCCeEEEEecCCCCHHHHHhhcCCCCCCceEEEEecCccccccCCCCeeEEEeCCCCccccccCCCCC
Q 001817 594 KDQLQAHPLLGDPSRVLLLACHGSMASSEQRLIFDKPEDGVRKIVLATNMAETSITINDVVFVIDCGKAKETSYDALNNT 673 (1009)
Q Consensus 594 ~~~L~~~~~~~~~~~~~v~~lHs~l~~~er~~v~~~f~~G~~kVLVATniae~GIdIp~V~~VId~g~~k~~~yd~~~~~ 673 (1009)
+-.|... ++....+|+||...||.+|.+++-+|++.||+||+...+|||-|+|++||+...++
T Consensus 272 AI~l~~~-------Gi~A~AYHAGLK~~ERTeVQe~WM~~~~PvI~AT~SFGMGVDKp~VRFViHW~~~q---------- 334 (641)
T KOG0352|consen 272 AIMLEIA-------GIPAMAYHAGLKKKERTEVQEKWMNNEIPVIAATVSFGMGVDKPDVRFVIHWSPSQ---------- 334 (641)
T ss_pred HHHhhhc-------CcchHHHhcccccchhHHHHHHHhcCCCCEEEEEeccccccCCcceeEEEecCchh----------
Confidence 9999876 78889999999999999999999999999999999999999999999999955554
Q ss_pred CcccccccCHHhHHhhhcccCCCC-CCcEEEecchhhhhh
Q 001817 674 PCLLPSWISKAAARQRRGRAGRVQ-PGECYHLYPRYVYDA 712 (1009)
Q Consensus 674 ~~l~~~~iS~as~~QR~GRAGR~~-~G~c~~Lys~~~~~~ 712 (1009)
+.+-|.|-.|||||.| +..|-..|++++-+.
T Consensus 335 --------n~AgYYQESGRAGRDGk~SyCRLYYsR~D~~~ 366 (641)
T KOG0352|consen 335 --------NLAGYYQESGRAGRDGKRSYCRLYYSRQDKNA 366 (641)
T ss_pred --------hhHHHHHhccccccCCCccceeeeecccchHH
Confidence 6678889999999996 477777788776543
No 92
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=99.89 E-value=2.4e-22 Score=233.78 Aligned_cols=309 Identities=19% Similarity=0.294 Sum_probs=207.0
Q ss_pred HHHhhcCCC---CHHHHHHHHHHHHcC------CeEEEEecCCCchhhhHHHHHHHHHHHHhcCCceEEEechhHHHHHH
Q 001817 290 MLEFRRSLP---SYKERDALLKAISEN------QVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAM 360 (1009)
Q Consensus 290 l~~~r~~LP---i~~~q~~il~~l~~~------~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~IvvtqPrR~La~ 360 (1009)
+.++...|| +..|+.. ++-|..+ -+=+++|.-|||||.++.+.++..+. .|. .+...+||-+||.
T Consensus 252 ~~~~~~~LPF~LT~aQ~~v-i~EI~~Dl~~~~~M~RLlQGDVGSGKTvVA~laml~ai~---~G~--Q~ALMAPTEILA~ 325 (677)
T COG1200 252 LAKFLAALPFKLTNAQKRV-IKEILADLASPVPMNRLLQGDVGSGKTVVALLAMLAAIE---AGY--QAALMAPTEILAE 325 (677)
T ss_pred HHHHHHhCCCCccHHHHHH-HHHHHhhhcCchhhHHHhccCcCCCHHHHHHHHHHHHHH---cCC--eeEEeccHHHHHH
Confidence 334445565 3445444 4444331 13478999999999999988887653 233 4555569999999
Q ss_pred HHHHHHHHHhC---Ccccceeee------eeeeccccCCCcEEEEEccHHHHHHHhcCCCCCCccEEEEeCCCcCCCcch
Q 001817 361 AVSERVAAERG---EKLGESVGY------KVRLEGMKGRDTRLMFCTTGILLRRLLVDRSLRGVTHVIVDEIHERGMNED 431 (1009)
Q Consensus 361 qva~rva~e~~---~~~g~~vGy------~vr~e~~~~~~t~Iiv~T~g~Ll~~L~~~~~l~~is~IIIDEaHeR~~~~d 431 (1009)
|.++.+.+.+. ..++-.+|- ....+...+...+|+|+|...+-+ +-.+.++.+||+||=|..|+...
T Consensus 326 QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHALiQd----~V~F~~LgLVIiDEQHRFGV~QR 401 (677)
T COG1200 326 QHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLASGEIDIVVGTHALIQD----KVEFHNLGLVIIDEQHRFGVHQR 401 (677)
T ss_pred HHHHHHHHHhhhcCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcchhhhc----ceeecceeEEEEeccccccHHHH
Confidence 99999988763 333333331 111233445678999999875433 22689999999999997665543
Q ss_pred HHHHHHHHHcccCC-CCcEEEeccCC-CHHHHHhhhCCCCeec---cCCcccceeeEehhhHHHHhhhccCcccccccch
Q 001817 432 FLLIVLKELLPRRP-ELRLILMSATL-NAELFSSYFGGAPMLH---IPGFTYPVRAYFLENILEMTRYRLNTYNQIDDYG 506 (1009)
Q Consensus 432 ~ll~llk~ll~~~~-~lkvIlmSATl-~~~~~~~yf~~~pvi~---i~g~~~pv~~~yl~~i~~~~~~~~~~~~~i~~~~ 506 (1009)
. .+..+.. .+.++.||||+ +...--..|++-.+.. .|.-.-|+......+-
T Consensus 402 ~------~L~~KG~~~Ph~LvMTATPIPRTLAlt~fgDldvS~IdElP~GRkpI~T~~i~~~------------------ 457 (677)
T COG1200 402 L------ALREKGEQNPHVLVMTATPIPRTLALTAFGDLDVSIIDELPPGRKPITTVVIPHE------------------ 457 (677)
T ss_pred H------HHHHhCCCCCcEEEEeCCCchHHHHHHHhccccchhhccCCCCCCceEEEEeccc------------------
Confidence 2 1222333 56799999999 5555557777654433 3434456766654320
Q ss_pred hhhHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhcchhhhhhhccccCCCCCcchhhHHHHHHHHHhhcCCCcEEEEcCC
Q 001817 507 QEKSWKMQKQALALRKRKSSIASAVEDALEAADFREYSVQTQQSLSCWNPDSIGFNLIEHVLCHIVKKERPGAVLVFMTG 586 (1009)
Q Consensus 507 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~ 586 (1009)
+...+.+.+.+. +. .+.++.|-||-
T Consensus 458 ----------------~~~~v~e~i~~e-------------------------------------i~--~GrQaY~VcPL 482 (677)
T COG1200 458 ----------------RRPEVYERIREE-------------------------------------IA--KGRQAYVVCPL 482 (677)
T ss_pred ----------------cHHHHHHHHHHH-------------------------------------HH--cCCEEEEEecc
Confidence 000111111111 11 34577787876
Q ss_pred HhH--------HHHHHHHHHcCCCCCCCCCeEEEEecCCCCHHHHHhhcCCCCCCceEEEEecCccccccCCCCeeEEEe
Q 001817 587 WDD--------INSLKDQLQAHPLLGDPSRVLLLACHGSMASSEQRLIFDKPEDGVRKIVLATNMAETSITINDVVFVID 658 (1009)
Q Consensus 587 ~~~--------i~~l~~~L~~~~~~~~~~~~~v~~lHs~l~~~er~~v~~~f~~G~~kVLVATniae~GIdIp~V~~VId 658 (1009)
.++ +..+++.|... .+++.+..+||.|+.+|+++|+++|++|+.+|||||.+.|-|||+|+.++.|-
T Consensus 483 IeESE~l~l~~a~~~~~~L~~~-----~~~~~vgL~HGrm~~~eKd~vM~~Fk~~e~~ILVaTTVIEVGVdVPnATvMVI 557 (677)
T COG1200 483 IEESEKLELQAAEELYEELKSF-----LPELKVGLVHGRMKPAEKDAVMEAFKEGEIDILVATTVIEVGVDVPNATVMVI 557 (677)
T ss_pred ccccccchhhhHHHHHHHHHHH-----cccceeEEEecCCChHHHHHHHHHHHcCCCcEEEEeeEEEecccCCCCeEEEE
Confidence 544 45566667632 23667999999999999999999999999999999999999999999988776
Q ss_pred CCCCccccccCCCCCCcccccccCHHhHHhhhcccCCC-CCCcEEEecchhh
Q 001817 659 CGKAKETSYDALNNTPCLLPSWISKAAARQRRGRAGRV-QPGECYHLYPRYV 709 (1009)
Q Consensus 659 ~g~~k~~~yd~~~~~~~l~~~~iS~as~~QR~GRAGR~-~~G~c~~Lys~~~ 709 (1009)
+|+.+ .--++..|-+||.||. .++.|+.+|....
T Consensus 558 --------e~AER---------FGLaQLHQLRGRVGRG~~qSyC~Ll~~~~~ 592 (677)
T COG1200 558 --------ENAER---------FGLAQLHQLRGRVGRGDLQSYCVLLYKPPL 592 (677)
T ss_pred --------echhh---------hhHHHHHHhccccCCCCcceEEEEEeCCCC
Confidence 34432 3556788999999998 5699999987543
No 93
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=99.89 E-value=1.2e-21 Score=237.91 Aligned_cols=106 Identities=24% Similarity=0.295 Sum_probs=95.9
Q ss_pred CCCcEEEEcCCHhHHHHHHHHHHcCCCCCCCCCeEEEEecCCCCHHHHHhhcCCCCCCceEEEEecCccccccCC---CC
Q 001817 576 RPGAVLVFMTGWDDINSLKDQLQAHPLLGDPSRVLLLACHGSMASSEQRLIFDKPEDGVRKIVLATNMAETSITI---ND 652 (1009)
Q Consensus 576 ~~g~iLVFl~~~~~i~~l~~~L~~~~~~~~~~~~~v~~lHs~l~~~er~~v~~~f~~G~~kVLVATniae~GIdI---p~ 652 (1009)
...++||||++.+.++.+++.|... ++.+..+||.+...++..+...+.+| +|+||||+|++|+|| |+
T Consensus 427 ~~~pvLIf~~t~~~se~l~~~L~~~-------gi~~~~L~~~~~~~e~~~i~~ag~~g--~VlIATdmAgRG~DI~l~~~ 497 (790)
T PRK09200 427 TGRPVLIGTGSIEQSETFSKLLDEA-------GIPHNLLNAKNAAKEAQIIAEAGQKG--AVTVATNMAGRGTDIKLGEG 497 (790)
T ss_pred cCCCEEEEeCcHHHHHHHHHHHHHC-------CCCEEEecCCccHHHHHHHHHcCCCC--eEEEEccchhcCcCCCcccc
Confidence 4679999999999999999999986 67789999999999998888888877 799999999999999 79
Q ss_pred ee-----EEEeCCCCccccccCCCCCCcccccccCHHhHHhhhcccCCCC-CCcEEEecchh
Q 001817 653 VV-----FVIDCGKAKETSYDALNNTPCLLPSWISKAAARQRRGRAGRVQ-PGECYHLYPRY 708 (1009)
Q Consensus 653 V~-----~VId~g~~k~~~yd~~~~~~~l~~~~iS~as~~QR~GRAGR~~-~G~c~~Lys~~ 708 (1009)
|. +||++++|. |...|.||+|||||.| +|.++.+++.+
T Consensus 498 V~~~GGL~VI~~d~p~------------------s~r~y~qr~GRtGR~G~~G~s~~~is~e 541 (790)
T PRK09200 498 VHELGGLAVIGTERME------------------SRRVDLQLRGRSGRQGDPGSSQFFISLE 541 (790)
T ss_pred cccccCcEEEeccCCC------------------CHHHHHHhhccccCCCCCeeEEEEEcch
Confidence 98 999988887 7789999999999996 69999988754
No 94
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.88 E-value=3e-21 Score=205.52 Aligned_cols=294 Identities=21% Similarity=0.297 Sum_probs=195.4
Q ss_pred HHHHHHHHcCCeEEEEecCCCchhhhHHHHHHHHHHHHhcCCceEEEechhHHHHHHHHHHHHHHHhC-Ccccceeeeee
Q 001817 304 DALLKAISENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERG-EKLGESVGYKV 382 (1009)
Q Consensus 304 ~~il~~l~~~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~IvvtqPrR~La~qva~rva~e~~-~~~g~~vGy~v 382 (1009)
.+++..+.+.+..+|.|-||+|||..+.+.+-.. ++ .+.+|.+..||...+.+++.|+.+-+. +.+....|
T Consensus 107 ~~l~q~i~~k~~~lv~AV~GaGKTEMif~~i~~a-l~----~G~~vciASPRvDVclEl~~Rlk~aF~~~~I~~Lyg--- 178 (441)
T COG4098 107 NQLVQYIKQKEDTLVWAVTGAGKTEMIFQGIEQA-LN----QGGRVCIASPRVDVCLELYPRLKQAFSNCDIDLLYG--- 178 (441)
T ss_pred HHHHHHHHhcCcEEEEEecCCCchhhhHHHHHHH-Hh----cCCeEEEecCcccchHHHHHHHHHhhccCCeeeEec---
Confidence 5567778889999999999999997776665433 22 345788888999999999999998875 44433333
Q ss_pred eeccccCCCcEEEEEccHHHHHHHhcCCCCCCccEEEEeCCCcCCCcchHHHHH-HHHHcccCCCCcEEEeccCCCHHHH
Q 001817 383 RLEGMKGRDTRLMFCTTGILLRRLLVDRSLRGVTHVIVDEIHERGMNEDFLLIV-LKELLPRRPELRLILMSATLNAELF 461 (1009)
Q Consensus 383 r~e~~~~~~t~Iiv~T~g~Ll~~L~~~~~l~~is~IIIDEaHeR~~~~d~ll~l-lk~ll~~~~~lkvIlmSATl~~~~~ 461 (1009)
++..--.+.++|+|+-.|++. -+.++++||||+|......|..+.. ++.. +.++--+|.||||...+.-
T Consensus 179 --~S~~~fr~plvVaTtHQLlrF------k~aFD~liIDEVDAFP~~~d~~L~~Av~~a--rk~~g~~IylTATp~k~l~ 248 (441)
T COG4098 179 --DSDSYFRAPLVVATTHQLLRF------KQAFDLLIIDEVDAFPFSDDQSLQYAVKKA--RKKEGATIYLTATPTKKLE 248 (441)
T ss_pred --CCchhccccEEEEehHHHHHH------HhhccEEEEeccccccccCCHHHHHHHHHh--hcccCceEEEecCChHHHH
Confidence 222223478999999999984 3578999999999866666644433 2222 2334458999999976655
Q ss_pred HhhhCC-CCeeccCCccc----ceeeEe-hhhHHHHhhhccCcccccccchhhhHHHHHHHHHHHHhhhhhHHHHHHHHH
Q 001817 462 SSYFGG-APMLHIPGFTY----PVRAYF-LENILEMTRYRLNTYNQIDDYGQEKSWKMQKQALALRKRKSSIASAVEDAL 535 (1009)
Q Consensus 462 ~~yf~~-~pvi~i~g~~~----pv~~~y-l~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l 535 (1009)
.+...+ ...+.+|.|.+ |+..+. ..+ |.. .+
T Consensus 249 r~~~~g~~~~~klp~RfH~~pLpvPkf~w~~~-----------------------~~k--------------------~l 285 (441)
T COG4098 249 RKILKGNLRILKLPARFHGKPLPVPKFVWIGN-----------------------WNK--------------------KL 285 (441)
T ss_pred HHhhhCCeeEeecchhhcCCCCCCCceEEecc-----------------------HHH--------------------Hh
Confidence 554433 23345554432 221111 100 000 00
Q ss_pred HHhhhcchhhhhhhccccCCCCCcchhhHHHHHHHHHhhc-CCCcEEEEcCCHhHHHHHHHHHHcCCCCCCCCCeEEEEe
Q 001817 536 EAADFREYSVQTQQSLSCWNPDSIGFNLIEHVLCHIVKKE-RPGAVLVFMTGWDDINSLKDQLQAHPLLGDPSRVLLLAC 614 (1009)
Q Consensus 536 ~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~~-~~g~iLVFl~~~~~i~~l~~~L~~~~~~~~~~~~~v~~l 614 (1009)
. ...+. ..++.++-++. .+.++|||+|+.+..+.+++.|+... +...+...
T Consensus 286 ~-------------------r~kl~----~kl~~~lekq~~~~~P~liF~p~I~~~eq~a~~lk~~~-----~~~~i~~V 337 (441)
T COG4098 286 Q-------------------RNKLP----LKLKRWLEKQRKTGRPVLIFFPEIETMEQVAAALKKKL-----PKETIASV 337 (441)
T ss_pred h-------------------hccCC----HHHHHHHHHHHhcCCcEEEEecchHHHHHHHHHHHhhC-----Cccceeee
Confidence 0 00000 01222222222 34699999999999999999996541 24457788
Q ss_pred cCCCCHHHHHhhcCCCCCCceEEEEecCccccccCCCCeeEEEeCCCCccccccCCCCCCcccccccCHHhHHhhhcccC
Q 001817 615 HGSMASSEQRLIFDKPEDGVRKIVLATNMAETSITINDVVFVIDCGKAKETSYDALNNTPCLLPSWISKAAARQRRGRAG 694 (1009)
Q Consensus 615 Hs~l~~~er~~v~~~f~~G~~kVLVATniae~GIdIp~V~~VId~g~~k~~~yd~~~~~~~l~~~~iS~as~~QR~GRAG 694 (1009)
||.- ..|.+..+.|++|+.++|++|.|+|+|+|+|+|+++|- ++.. .-.|.+..+|.+||+|
T Consensus 338 hs~d--~~R~EkV~~fR~G~~~lLiTTTILERGVTfp~vdV~Vl---------gaeh-------~vfTesaLVQIaGRvG 399 (441)
T COG4098 338 HSED--QHRKEKVEAFRDGKITLLITTTILERGVTFPNVDVFVL---------GAEH-------RVFTESALVQIAGRVG 399 (441)
T ss_pred eccC--ccHHHHHHHHHcCceEEEEEeehhhcccccccceEEEe---------cCCc-------ccccHHHHHHHhhhcc
Confidence 8863 56777788999999999999999999999999976652 1111 1138899999999999
Q ss_pred CC--CC-CcEEEe
Q 001817 695 RV--QP-GECYHL 704 (1009)
Q Consensus 695 R~--~~-G~c~~L 704 (1009)
|. .| |..+.+
T Consensus 400 Rs~~~PtGdv~FF 412 (441)
T COG4098 400 RSLERPTGDVLFF 412 (441)
T ss_pred CCCcCCCCcEEEE
Confidence 98 34 765544
No 95
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=99.88 E-value=2.4e-21 Score=231.65 Aligned_cols=106 Identities=23% Similarity=0.255 Sum_probs=94.9
Q ss_pred CCCcEEEEcCCHhHHHHHHHHHHcCCCCCCCCCeEEEEecCCCCHHHHHhhcCCCCCCceEEEEecCccccccCCCC---
Q 001817 576 RPGAVLVFMTGWDDINSLKDQLQAHPLLGDPSRVLLLACHGSMASSEQRLIFDKPEDGVRKIVLATNMAETSITIND--- 652 (1009)
Q Consensus 576 ~~g~iLVFl~~~~~i~~l~~~L~~~~~~~~~~~~~v~~lHs~l~~~er~~v~~~f~~G~~kVLVATniae~GIdIp~--- 652 (1009)
.+.++||||++.+.++.+.+.|... ++....+||. +.+|+..+..|+.+...|+||||+|++|+||+.
T Consensus 404 ~grpvLV~t~si~~se~ls~~L~~~-------gi~~~~Lna~--q~~rEa~ii~~ag~~g~VtIATnmAgRGtDI~l~~V 474 (745)
T TIGR00963 404 KGQPVLVGTTSVEKSELLSNLLKER-------GIPHNVLNAK--NHEREAEIIAQAGRKGAVTIATNMAGRGTDIKLEEV 474 (745)
T ss_pred cCCCEEEEeCcHHHHHHHHHHHHHc-------CCCeEEeeCC--hHHHHHHHHHhcCCCceEEEEeccccCCcCCCccch
Confidence 4569999999999999999999987 6667889998 778888889999999999999999999999998
Q ss_pred ----eeEEEeCCCCccccccCCCCCCcccccccCHHhHHhhhcccCCCC-CCcEEEecchh
Q 001817 653 ----VVFVIDCGKAKETSYDALNNTPCLLPSWISKAAARQRRGRAGRVQ-PGECYHLYPRY 708 (1009)
Q Consensus 653 ----V~~VId~g~~k~~~yd~~~~~~~l~~~~iS~as~~QR~GRAGR~~-~G~c~~Lys~~ 708 (1009)
..+||++.+|. |...+.||+|||||.| ||.+..+.+.+
T Consensus 475 ~~~GGl~VI~t~~p~------------------s~ri~~q~~GRtGRqG~~G~s~~~ls~e 517 (745)
T TIGR00963 475 KELGGLYVIGTERHE------------------SRRIDNQLRGRSGRQGDPGSSRFFLSLE 517 (745)
T ss_pred hhcCCcEEEecCCCC------------------cHHHHHHHhccccCCCCCcceEEEEecc
Confidence 45999988887 8889999999999996 59998887765
No 96
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.88 E-value=1.2e-22 Score=240.86 Aligned_cols=333 Identities=18% Similarity=0.206 Sum_probs=179.2
Q ss_pred EEEecCCCchhhhHHHHHHHHHHHHhcCCceEEEechhHHHHHHHHHHHHHHHhCCcccceeeeeee------eccccCC
Q 001817 317 VVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERGEKLGESVGYKVR------LEGMKGR 390 (1009)
Q Consensus 317 II~apTGSGKTt~~~~~ile~~~~~~~~~~~~IvvtqPrR~La~qva~rva~e~~~~~g~~vGy~vr------~e~~~~~ 390 (1009)
++.|+||||||.++...+.+. +. . +..+++++|+++|+.|+++++.+.++..+....|-... +......
T Consensus 1 LL~g~TGsGKT~v~l~~i~~~-l~--~--g~~vLvlvP~i~L~~Q~~~~l~~~f~~~v~vlhs~~~~~er~~~~~~~~~g 75 (505)
T TIGR00595 1 LLFGVTGSGKTEVYLQAIEKV-LA--L--GKSVLVLVPEIALTPQMIQRFKYRFGSQVAVLHSGLSDSEKLQAWRKVKNG 75 (505)
T ss_pred CccCCCCCCHHHHHHHHHHHH-HH--c--CCeEEEEeCcHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHHcC
Confidence 468999999998887665443 32 2 23577777999999999999998887654333221110 0111234
Q ss_pred CcEEEEEccHHHHHHHhcCCCCCCccEEEEeCCCcCCCcchHH----HHHHHHHcccCCCCcEEEeccCCCHHHHHhhhC
Q 001817 391 DTRLMFCTTGILLRRLLVDRSLRGVTHVIVDEIHERGMNEDFL----LIVLKELLPRRPELRLILMSATLNAELFSSYFG 466 (1009)
Q Consensus 391 ~t~Iiv~T~g~Ll~~L~~~~~l~~is~IIIDEaHeR~~~~d~l----l~llk~ll~~~~~lkvIlmSATl~~~~~~~yf~ 466 (1009)
+.+|+|+|+..+.. .+.++++|||||+|+-+...+-. ..-+..+.....+.++|++|||+..+.+.....
T Consensus 76 ~~~IVVGTrsalf~------p~~~l~lIIVDEeh~~sykq~~~p~y~ar~~a~~ra~~~~~~vil~SATPsles~~~~~~ 149 (505)
T TIGR00595 76 EILVVIGTRSALFL------PFKNLGLIIVDEEHDSSYKQEEGPRYHARDVAVYRAKKFNCPVVLGSATPSLESYHNAKQ 149 (505)
T ss_pred CCCEEECChHHHcC------cccCCCEEEEECCCccccccccCCCCcHHHHHHHHHHhcCCCEEEEeCCCCHHHHHHHhc
Confidence 57899999987642 47889999999999644322110 001122223346788999999998887765543
Q ss_pred CC-CeeccC----CcccceeeEehhhHHHHhhhccCcccccccchhhhHHHHHHHHHHHHhhhhhHHHHHHHHHHHh---
Q 001817 467 GA-PMLHIP----GFTYPVRAYFLENILEMTRYRLNTYNQIDDYGQEKSWKMQKQALALRKRKSSIASAVEDALEAA--- 538 (1009)
Q Consensus 467 ~~-pvi~i~----g~~~pv~~~yl~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~--- 538 (1009)
+. ..+..+ +...|. +...+ . ..+. . . ..-...+.+.+.+.+...
T Consensus 150 g~~~~~~l~~r~~~~~~p~-v~vid-~-----------------~~~~-~----~----~~ls~~l~~~i~~~l~~g~qv 201 (505)
T TIGR00595 150 KAYRLLVLTRRVSGRKPPE-VKLID-M-----------------RKEP-R----Q----SFLSPELITAIEQTLAAGEQS 201 (505)
T ss_pred CCeEEeechhhhcCCCCCe-EEEEe-c-----------------cccc-c----c----CCccHHHHHHHHHHHHcCCcE
Confidence 32 112221 111111 11110 0 0000 0 0 000001112222222211
Q ss_pred ----hhcchhhhhhhccccCCCCCcchh--h-----HHHHHHHHHhhcC----------CCcEEEEcCCHhHHHHHHHHH
Q 001817 539 ----DFREYSVQTQQSLSCWNPDSIGFN--L-----IEHVLCHIVKKER----------PGAVLVFMTGWDDINSLKDQL 597 (1009)
Q Consensus 539 ----~~~~~~~~~~~~l~~~~~~~i~~~--l-----i~~ll~~i~~~~~----------~g~iLVFl~~~~~i~~l~~~L 597 (1009)
...+|.....-.-..|...+...+ + -..+.++.|.... ...+.-+-.| ++++.+.|
T Consensus 202 LvflnrrGya~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~C~s~~l~~~g~G---te~~~e~l 278 (505)
T TIGR00595 202 ILFLNRRGYSKNLLCRSCGYILCCPNCDVSLTYHKKEGKLRCHYCGYQEPIPKTCPQCGSEDLVYKGYG---TEQVEEEL 278 (505)
T ss_pred EEEEeCCcCCCeeEhhhCcCccCCCCCCCceEEecCCCeEEcCCCcCcCCCCCCCCCCCCCeeEeeccc---HHHHHHHH
Confidence 001111000000000000000000 0 0011222222111 0111111112 45666666
Q ss_pred HcCCCCCCCCCeEEEEecCCCCHHHH--HhhcCCCCCCceEEEEecCccccccCCCCeeEE--EeCCCCccccccCCCCC
Q 001817 598 QAHPLLGDPSRVLLLACHGSMASSEQ--RLIFDKPEDGVRKIVLATNMAETSITINDVVFV--IDCGKAKETSYDALNNT 673 (1009)
Q Consensus 598 ~~~~~~~~~~~~~v~~lHs~l~~~er--~~v~~~f~~G~~kVLVATniae~GIdIp~V~~V--Id~g~~k~~~yd~~~~~ 673 (1009)
.+. + ++..+..+|++++..++ +.+++.|++|+.+|||+|++++.|+|+|+|+.| +| +|...+.
T Consensus 279 ~~~--f---p~~~v~~~d~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~i~kG~d~~~v~lV~vl~--------aD~~l~~ 345 (505)
T TIGR00595 279 AKL--F---PGARIARIDSDTTSRKGAHEALLNQFANGKADILIGTQMIAKGHHFPNVTLVGVLD--------ADSGLHS 345 (505)
T ss_pred Hhh--C---CCCcEEEEecccccCccHHHHHHHHHhcCCCCEEEeCcccccCCCCCcccEEEEEc--------CcccccC
Confidence 654 1 24568899999987665 789999999999999999999999999999877 46 3433344
Q ss_pred CcccccccCHHhHHhhhcccCCC-CCCcEEEe
Q 001817 674 PCLLPSWISKAAARQRRGRAGRV-QPGECYHL 704 (1009)
Q Consensus 674 ~~l~~~~iS~as~~QR~GRAGR~-~~G~c~~L 704 (1009)
+.+....-.-..+.|++|||||. .+|.++..
T Consensus 346 pd~ra~E~~~~ll~q~~GRagR~~~~g~viiq 377 (505)
T TIGR00595 346 PDFRAAERGFQLLTQVAGRAGRAEDPGQVIIQ 377 (505)
T ss_pred cccchHHHHHHHHHHHHhccCCCCCCCEEEEE
Confidence 44432223456788999999997 56888743
No 97
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.88 E-value=3.5e-21 Score=244.26 Aligned_cols=355 Identities=15% Similarity=0.207 Sum_probs=198.0
Q ss_pred CCHHHHHHHHHHHH-----cCCeEEEEecCCCchhhhHHHHHHHHHHHHhcCCceEEEechhHHHHHHHHHHHHHHHhCC
Q 001817 298 PSYKERDALLKAIS-----ENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERGE 372 (1009)
Q Consensus 298 Pi~~~q~~il~~l~-----~~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~IvvtqPrR~La~qva~rva~e~~~ 372 (1009)
....+|.+.+.++. .++.++|+++||||||..+...+ ..++.. +...+|++++||++|+.|..+.+......
T Consensus 413 ~lR~YQ~~AI~ai~~a~~~g~r~~Ll~maTGSGKT~tai~li-~~L~~~--~~~~rVLfLvDR~~L~~Qa~~~F~~~~~~ 489 (1123)
T PRK11448 413 GLRYYQEDAIQAVEKAIVEGQREILLAMATGTGKTRTAIALM-YRLLKA--KRFRRILFLVDRSALGEQAEDAFKDTKIE 489 (1123)
T ss_pred CCCHHHHHHHHHHHHHHHhccCCeEEEeCCCCCHHHHHHHHH-HHHHhc--CccCeEEEEecHHHHHHHHHHHHHhcccc
Confidence 34556666655543 34678999999999996655444 334332 23458999999999999999888654211
Q ss_pred c---ccceeeeeeeeccccCCCcEEEEEccHHHHHHHhcC------CCCCCccEEEEeCCCcCCCcch-------H----
Q 001817 373 K---LGESVGYKVRLEGMKGRDTRLMFCTTGILLRRLLVD------RSLRGVTHVIVDEIHERGMNED-------F---- 432 (1009)
Q Consensus 373 ~---~g~~vGy~vr~e~~~~~~t~Iiv~T~g~Ll~~L~~~------~~l~~is~IIIDEaHeR~~~~d-------~---- 432 (1009)
. +....+..--.+.....+.+|+|+|.+.+.+.+... +.+..+++||||||| |+...| .
T Consensus 490 ~~~~~~~i~~i~~L~~~~~~~~~~I~iaTiQtl~~~~~~~~~~~~~~~~~~fdlIIiDEaH-Rs~~~d~~~~~~~~~~~~ 568 (1123)
T PRK11448 490 GDQTFASIYDIKGLEDKFPEDETKVHVATVQGMVKRILYSDDPMDKPPVDQYDCIIVDEAH-RGYTLDKEMSEGELQFRD 568 (1123)
T ss_pred cccchhhhhchhhhhhhcccCCCCEEEEEHHHHHHhhhccccccccCCCCcccEEEEECCC-CCCccccccccchhccch
Confidence 1 111111100011122345799999999988775421 257889999999999 654211 0
Q ss_pred ---HHHHHHHHcccCCCCcEEEeccCCCHHHHHhhhCCCCeecc-------CCccc----ceeeEehhhHHHHhhhccCc
Q 001817 433 ---LLIVLKELLPRRPELRLILMSATLNAELFSSYFGGAPMLHI-------PGFTY----PVRAYFLENILEMTRYRLNT 498 (1009)
Q Consensus 433 ---ll~llk~ll~~~~~lkvIlmSATl~~~~~~~yf~~~pvi~i-------~g~~~----pv~~~yl~~i~~~~~~~~~~ 498 (1009)
....++.++.. .+..+|+||||+... ..++||. |+... .|..- |+.+. ..+ ...+.....
T Consensus 569 ~~~~~~~yr~iL~y-FdA~~IGLTATP~r~-t~~~FG~-pv~~Ysl~eAI~DG~Lv~~~~p~~i~--t~~-~~~gi~~~~ 642 (1123)
T PRK11448 569 QLDYVSKYRRVLDY-FDAVKIGLTATPALH-TTEIFGE-PVYTYSYREAVIDGYLIDHEPPIRIE--TRL-SQEGIHFEK 642 (1123)
T ss_pred hhhHHHHHHHHHhh-cCccEEEEecCCccc-hhHHhCC-eeEEeeHHHHHhcCCcccCcCCEEEE--EEe-ccccccccc
Confidence 12345555553 345789999999542 3567763 33221 12221 11110 000 000000000
Q ss_pred ccccccchhhhHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhcchhhhhhhccccCCCCCcchhhHH-HHHHHHHhhcCC
Q 001817 499 YNQIDDYGQEKSWKMQKQALALRKRKSSIASAVEDALEAADFREYSVQTQQSLSCWNPDSIGFNLIE-HVLCHIVKKERP 577 (1009)
Q Consensus 499 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~-~ll~~i~~~~~~ 577 (1009)
.+.+..+..... ...... ...........+...+.. +. ....+. .++.++ ....+
T Consensus 643 ~e~~~~~~~~~~-~i~~~~--l~d~~~~~~~~~~~~vi~------------------~~--~~~~i~~~l~~~l-~~~~~ 698 (1123)
T PRK11448 643 GEEVEVINTQTG-EIDLAT--LEDEVDFEVEDFNRRVIT------------------ES--FNRVVCEELAKYL-DPTGE 698 (1123)
T ss_pred cchhhhcchhhh-hhhhcc--CcHHHhhhHHHHHHHHhh------------------HH--HHHHHHHHHHHHH-hccCC
Confidence 000000000000 000000 000000000000000000 00 001111 222222 33345
Q ss_pred CcEEEEcCCHhHHHHHHHHHHcCCC--CCCCCCeEEEEecCCCCHHHHHhhcCCCCCCce-EEEEecCccccccCCCCee
Q 001817 578 GAVLVFMTGWDDINSLKDQLQAHPL--LGDPSRVLLLACHGSMASSEQRLIFDKPEDGVR-KIVLATNMAETSITINDVV 654 (1009)
Q Consensus 578 g~iLVFl~~~~~i~~l~~~L~~~~~--~~~~~~~~v~~lHs~l~~~er~~v~~~f~~G~~-kVLVATniae~GIdIp~V~ 654 (1009)
+++||||.+.++++.+++.|..... .+......+..+||+.+ ++..+++.|+++.. +|+|+++++.+|+|+|.|.
T Consensus 699 ~KtiIF~~s~~HA~~i~~~L~~~f~~~~~~~~~~~v~~itg~~~--~~~~li~~Fk~~~~p~IlVsvdmL~TG~DvP~v~ 776 (1123)
T PRK11448 699 GKTLIFAATDAHADMVVRLLKEAFKKKYGQVEDDAVIKITGSID--KPDQLIRRFKNERLPNIVVTVDLLTTGIDVPSIC 776 (1123)
T ss_pred CcEEEEEcCHHHHHHHHHHHHHHHHhhcCCcCccceEEEeCCcc--chHHHHHHHhCCCCCeEEEEecccccCCCccccc
Confidence 8999999999999999998875310 01112234566888875 45678999999876 7999999999999999999
Q ss_pred EEEeCCCCccccccCCCCCCcccccccCHHhHHhhhcccCCCCC--Cc-EEEecc
Q 001817 655 FVIDCGKAKETSYDALNNTPCLLPSWISKAAARQRRGRAGRVQP--GE-CYHLYP 706 (1009)
Q Consensus 655 ~VId~g~~k~~~yd~~~~~~~l~~~~iS~as~~QR~GRAGR~~~--G~-c~~Lys 706 (1009)
+||....++ |...|.||+||+.|..+ |+ ++.+|.
T Consensus 777 ~vVf~rpvk------------------S~~lf~QmIGRgtR~~~~~~K~~f~I~D 813 (1123)
T PRK11448 777 NLVFLRRVR------------------SRILYEQMLGRATRLCPEIGKTHFRIFD 813 (1123)
T ss_pred EEEEecCCC------------------CHHHHHHHHhhhccCCccCCCceEEEEe
Confidence 999876665 88999999999999977 44 344544
No 98
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=99.88 E-value=4.7e-21 Score=234.18 Aligned_cols=313 Identities=20% Similarity=0.262 Sum_probs=217.8
Q ss_pred ChhhHHHHHhhcCCCCHHHHHHHHHHHHc----CC--eEEEEecCCCchhhhHHHHHHHHHHHHhcCCceEEEechhHHH
Q 001817 284 SPEGQKMLEFRRSLPSYKERDALLKAISE----NQ--VVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRI 357 (1009)
Q Consensus 284 ~~~~~~l~~~r~~LPi~~~q~~il~~l~~----~~--~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~IvvtqPrR~ 357 (1009)
+..++..++.....--..-|...++.+.+ ++ +=+|||.-|-|||-++.-++...+. .| ..|.|++||..
T Consensus 580 d~~~q~~F~~~FPyeET~DQl~AI~eVk~DM~~~kpMDRLiCGDVGFGKTEVAmRAAFkAV~---~G--KQVAvLVPTTl 654 (1139)
T COG1197 580 DTEWQEEFEASFPYEETPDQLKAIEEVKRDMESGKPMDRLICGDVGFGKTEVAMRAAFKAVM---DG--KQVAVLVPTTL 654 (1139)
T ss_pred ChHHHHHHHhcCCCcCCHHHHHHHHHHHHHhccCCcchheeecCcCCcHHHHHHHHHHHHhc---CC--CeEEEEcccHH
Confidence 34445555544443333344444444432 32 4578999999999999888876553 23 46777779999
Q ss_pred HHHHHHHHHHHHhCCcccceeeeeeeecc----------ccCCCcEEEEEccHHHHHHHhcCCCCCCccEEEEeCCCcCC
Q 001817 358 SAMAVSERVAAERGEKLGESVGYKVRLEG----------MKGRDTRLMFCTTGILLRRLLVDRSLRGVTHVIVDEIHERG 427 (1009)
Q Consensus 358 La~qva~rva~e~~~~~g~~vGy~vr~e~----------~~~~~t~Iiv~T~g~Ll~~L~~~~~l~~is~IIIDEaHeR~ 427 (1009)
||.|.++.+.+.|. .++..|+.-.|+.+ ......+|+|+|.-. |..+-.+++++++||||-|..|
T Consensus 655 LA~QHy~tFkeRF~-~fPV~I~~LSRF~s~kE~~~il~~la~G~vDIvIGTHrL----L~kdv~FkdLGLlIIDEEqRFG 729 (1139)
T COG1197 655 LAQQHYETFKERFA-GFPVRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGTHRL----LSKDVKFKDLGLLIIDEEQRFG 729 (1139)
T ss_pred hHHHHHHHHHHHhc-CCCeeEEEecccCCHHHHHHHHHHHhcCCccEEEechHh----hCCCcEEecCCeEEEechhhcC
Confidence 99999999988773 34445554445432 233568999999743 3445578999999999999877
Q ss_pred CcchHHHHHHHHHcccCCCCcEEEeccCC-CHHHHHhhhC--CCCeecc-CCcccceeeEehhhHHHHhhhccCcccccc
Q 001817 428 MNEDFLLIVLKELLPRRPELRLILMSATL-NAELFSSYFG--GAPMLHI-PGFTYPVRAYFLENILEMTRYRLNTYNQID 503 (1009)
Q Consensus 428 ~~~d~ll~llk~ll~~~~~lkvIlmSATl-~~~~~~~yf~--~~pvi~i-~g~~~pv~~~yl~~i~~~~~~~~~~~~~i~ 503 (1009)
+.-- .++...+.++-++-||||+ +...-.+..| +-.++.. |...+||..+..+.-
T Consensus 730 Vk~K------EkLK~Lr~~VDvLTLSATPIPRTL~Msm~GiRdlSvI~TPP~~R~pV~T~V~~~d--------------- 788 (1139)
T COG1197 730 VKHK------EKLKELRANVDVLTLSATPIPRTLNMSLSGIRDLSVIATPPEDRLPVKTFVSEYD--------------- 788 (1139)
T ss_pred ccHH------HHHHHHhccCcEEEeeCCCCcchHHHHHhcchhhhhccCCCCCCcceEEEEecCC---------------
Confidence 6643 2233345788899999998 4433233333 2223333 345678887765420
Q ss_pred cchhhhHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhcchhhhhhhccccCCCCCcchhhHHHHHHHHHhhcCCCcEEEE
Q 001817 504 DYGQEKSWKMQKQALALRKRKSSIASAVEDALEAADFREYSVQTQQSLSCWNPDSIGFNLIEHVLCHIVKKERPGAVLVF 583 (1009)
Q Consensus 504 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVF 583 (1009)
...+.++ ++.++ ..+|++..-
T Consensus 789 ------------------------~~~ireA--------------------------------I~REl---~RgGQvfYv 809 (1139)
T COG1197 789 ------------------------DLLIREA--------------------------------ILREL---LRGGQVFYV 809 (1139)
T ss_pred ------------------------hHHHHHH--------------------------------HHHHH---hcCCEEEEE
Confidence 0111111 12222 257899999
Q ss_pred cCCHhHHHHHHHHHHcCCCCCCCCCeEEEEecCCCCHHHHHhhcCCCCCCceEEEEecCccccccCCCCeeEEEeCCCCc
Q 001817 584 MTGWDDINSLKDQLQAHPLLGDPSRVLLLACHGSMASSEQRLIFDKPEDGVRKIVLATNMAETSITINDVVFVIDCGKAK 663 (1009)
Q Consensus 584 l~~~~~i~~l~~~L~~~~~~~~~~~~~v~~lHs~l~~~er~~v~~~f~~G~~kVLVATniae~GIdIp~V~~VId~g~~k 663 (1009)
.|..++|+.+++.|+.. .+...|..-||.|+..+-+.++..|-+|..+|||||.|.|+|||||+++.+|--
T Consensus 810 ~NrV~~Ie~~~~~L~~L-----VPEarI~vaHGQM~e~eLE~vM~~F~~g~~dVLv~TTIIEtGIDIPnANTiIIe---- 880 (1139)
T COG1197 810 HNRVESIEKKAERLREL-----VPEARIAVAHGQMRERELEEVMLDFYNGEYDVLVCTTIIETGIDIPNANTIIIE---- 880 (1139)
T ss_pred ecchhhHHHHHHHHHHh-----CCceEEEEeecCCCHHHHHHHHHHHHcCCCCEEEEeeeeecCcCCCCCceEEEe----
Confidence 99999999999999986 235668999999999999999999999999999999999999999999776641
Q ss_pred cccccCCCCCCcccccccCHHhHHhhhcccCCC-CCCcEEEecchh
Q 001817 664 ETSYDALNNTPCLLPSWISKAAARQRRGRAGRV-QPGECYHLYPRY 708 (1009)
Q Consensus 664 ~~~yd~~~~~~~l~~~~iS~as~~QR~GRAGR~-~~G~c~~Lys~~ 708 (1009)
++ +. .--++..|-+||+||. ..|.||.||+..
T Consensus 881 ----~A----D~-----fGLsQLyQLRGRVGRS~~~AYAYfl~p~~ 913 (1139)
T COG1197 881 ----RA----DK-----FGLAQLYQLRGRVGRSNKQAYAYFLYPPQ 913 (1139)
T ss_pred ----cc----cc-----ccHHHHHHhccccCCccceEEEEEeecCc
Confidence 11 11 2456778999999999 569999999864
No 99
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]
Probab=99.88 E-value=2.4e-21 Score=229.59 Aligned_cols=331 Identities=19% Similarity=0.237 Sum_probs=205.0
Q ss_pred HHHHcCCeEEEEecCCCchhhhHHHHHHHHHHHHhcCCceEEEechhHHHHHHHHHHHHHHHhCCccccee-eeeeeecc
Q 001817 308 KAISENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERGEKLGESV-GYKVRLEG 386 (1009)
Q Consensus 308 ~~l~~~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~IvvtqPrR~La~qva~rva~e~~~~~g~~v-Gy~vr~e~ 386 (1009)
..+.++++.|..+||+.|||+++.+.++...+...+ .++.+.|-...+..-...+..+. ..+|..| +|.-++..
T Consensus 235 ~~~~e~~nliys~Pts~gktlvaeilml~~~l~~rr----~~llilp~vsiv~Ek~~~l~~~~-~~~G~~ve~y~g~~~p 309 (1008)
T KOG0950|consen 235 PRLLERKNLIYSLPTSAGKTLVAEILMLREVLCRRR----NVLLILPYVSIVQEKISALSPFS-IDLGFPVEEYAGRFPP 309 (1008)
T ss_pred hhhhcccceEEeCCCccchHHHHHHHHHHHHHHHhh----ceeEecceeehhHHHHhhhhhhc-cccCCcchhhcccCCC
Confidence 345689999999999999999999998888776433 33333466665555555553332 2233222 23322222
Q ss_pred c-cCCCcEEEEEccHH---HHHHHhcCCCCCCccEEEEeCCC-----cCCCcchHHHHHHHHHcc--cCCCCcEEEeccC
Q 001817 387 M-KGRDTRLMFCTTGI---LLRRLLVDRSLRGVTHVIVDEIH-----ERGMNEDFLLIVLKELLP--RRPELRLILMSAT 455 (1009)
Q Consensus 387 ~-~~~~t~Iiv~T~g~---Ll~~L~~~~~l~~is~IIIDEaH-----eR~~~~d~ll~llk~ll~--~~~~lkvIlmSAT 455 (1009)
. ..+...+.+||.++ |.+.+.....+..+++|||||.| +||...+.+ +.+++- ....+|+|+||||
T Consensus 310 ~~~~k~~sv~i~tiEkanslin~lie~g~~~~~g~vvVdElhmi~d~~rg~~lE~~---l~k~~y~~~~~~~~iIGMSAT 386 (1008)
T KOG0950|consen 310 EKRRKRESVAIATIEKANSLINSLIEQGRLDFLGMVVVDELHMIGDKGRGAILELL---LAKILYENLETSVQIIGMSAT 386 (1008)
T ss_pred CCcccceeeeeeehHhhHhHHHHHHhcCCccccCcEEEeeeeeeeccccchHHHHH---HHHHHHhccccceeEeeeecc
Confidence 1 22457899999864 55666666678889999999999 355444433 333332 2334789999999
Q ss_pred C-CHHHHHhhhCCCCeeccCCcccceeeEehhhHHHHhhhccCcccccccchhhhHHHHHHHHHHHHhhhhhHHHHHHHH
Q 001817 456 L-NAELFSSYFGGAPMLHIPGFTYPVRAYFLENILEMTRYRLNTYNQIDDYGQEKSWKMQKQALALRKRKSSIASAVEDA 534 (1009)
Q Consensus 456 l-~~~~~~~yf~~~pvi~i~g~~~pv~~~yl~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 534 (1009)
+ |.+.++.||+. .+.. .+.-||... +.+ .+...+ |... .......+...
T Consensus 387 i~N~~lL~~~L~A-~~y~--t~fRPv~L~--E~i--------k~G~~i--~~~~---------------r~~~lr~ia~l 436 (1008)
T KOG0950|consen 387 IPNNSLLQDWLDA-FVYT--TRFRPVPLK--EYI--------KPGSLI--YESS---------------RNKVLREIANL 436 (1008)
T ss_pred cCChHHHHHHhhh-hhee--cccCcccch--hcc--------CCCccc--ccch---------------hhHHHHHhhhh
Confidence 9 89999999972 1111 122222211 100 000000 0000 00000001100
Q ss_pred HHHhhhcchhhhhhhccccCCCCCcchhhHHHHHHHHHhhcCCCcEEEEcCCHhHHHHHHHHHHcCC--------C----
Q 001817 535 LEAADFREYSVQTQQSLSCWNPDSIGFNLIEHVLCHIVKKERPGAVLVFMTGWDDINSLKDQLQAHP--------L---- 602 (1009)
Q Consensus 535 l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~~~~i~~l~~~L~~~~--------~---- 602 (1009)
... .....+| |.+..+...... ++.++|||||++..++.++..+...- .
T Consensus 437 ~~~------------~~g~~dp-----D~~v~L~tet~~--e~~~~lvfc~sk~~ce~~a~~~~~~vpk~~~~e~~~~~~ 497 (1008)
T KOG0950|consen 437 YSS------------NLGDEDP-----DHLVGLCTETAP--EGSSVLVFCPSKKNCENVASLIAKKVPKHIKSEKRLGLW 497 (1008)
T ss_pred hhh------------hcccCCC-----cceeeehhhhhh--cCCeEEEEcCcccchHHHHHHHHHHhhHhhhhhhhhhHH
Confidence 000 0000011 111112212111 23469999999999999887664310 0
Q ss_pred -------------------CCCCCCeEEEEecCCCCHHHHHhhcCCCCCCceEEEEecCccccccCCCCeeEEEeCCCCc
Q 001817 603 -------------------LGDPSRVLLLACHGSMASSEQRLIFDKPEDGVRKIVLATNMAETSITINDVVFVIDCGKAK 663 (1009)
Q Consensus 603 -------------------~~~~~~~~v~~lHs~l~~~er~~v~~~f~~G~~kVLVATniae~GIdIp~V~~VId~g~~k 663 (1009)
+.......+.+||+|++.++|+.|...|+.|.+.|++||++++.|+|.|..+++|..-
T Consensus 498 ~~~s~s~~lr~~~~~ld~Vl~~ti~~GvAyHhaGLT~eER~~iE~afr~g~i~vl~aTSTlaaGVNLPArRVIiraP--- 574 (1008)
T KOG0950|consen 498 ELLSISNLLRRIPGILDPVLAKTIPYGVAYHHAGLTSEEREIIEAAFREGNIFVLVATSTLAAGVNLPARRVIIRAP--- 574 (1008)
T ss_pred HHHHHHhHhhcCCcccchHHheeccccceecccccccchHHHHHHHHHhcCeEEEEecchhhccCcCCcceeEEeCC---
Confidence 0112245799999999999999999999999999999999999999999999999632
Q ss_pred cccccCCCCCCcccccccCHHhHHhhhcccCCCC---CCcEEEecchhh
Q 001817 664 ETSYDALNNTPCLLPSWISKAAARQRRGRAGRVQ---PGECYHLYPRYV 709 (1009)
Q Consensus 664 ~~~yd~~~~~~~l~~~~iS~as~~QR~GRAGR~~---~G~c~~Lys~~~ 709 (1009)
.+.....+..+|.||+|||||+| -|.++.++.+..
T Consensus 575 -----------~~g~~~l~~~~YkQM~GRAGR~gidT~GdsiLI~k~~e 612 (1008)
T KOG0950|consen 575 -----------YVGREFLTRLEYKQMVGRAGRTGIDTLGDSILIIKSSE 612 (1008)
T ss_pred -----------ccccchhhhhhHHhhhhhhhhcccccCcceEEEeeccc
Confidence 23345578999999999999996 399999987654
No 100
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.87 E-value=7.1e-22 Score=243.18 Aligned_cols=306 Identities=17% Similarity=0.174 Sum_probs=206.1
Q ss_pred HHHHHHHHHcCCeEEEEecCCCchhhhHHHHHHHHHHHHhcCCceEEEechhHHHHHHHHHHHHHHHhCCcccceeeeee
Q 001817 303 RDALLKAISENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERGEKLGESVGYKV 382 (1009)
Q Consensus 303 q~~il~~l~~~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~IvvtqPrR~La~qva~rva~e~~~~~g~~vGy~v 382 (1009)
|.+++.++..|++++|..|||.||++++.++.+- ..+..||+.|...|..-+...+. ..+......-+-+.
T Consensus 269 Q~eaI~~~l~Gkd~fvlmpTG~GKSLCYQlPA~l--------~~gitvVISPL~SLm~DQv~~L~-~~~I~a~~L~s~q~ 339 (941)
T KOG0351|consen 269 QLEAINATLSGKDCFVLMPTGGGKSLCYQLPALL--------LGGVTVVISPLISLMQDQVTHLS-KKGIPACFLSSIQT 339 (941)
T ss_pred HHHHHHHHHcCCceEEEeecCCceeeEeeccccc--------cCCceEEeccHHHHHHHHHHhhh-hcCcceeecccccc
Confidence 4555668899999999999999999888776652 12366777899999887666662 22222111111111
Q ss_pred e------eccccC--CCcEEEEEccHHHHHHHhc---CCCCCC---ccEEEEeCCCcCC-CcchHHHH--HHHHHcccCC
Q 001817 383 R------LEGMKG--RDTRLMFCTTGILLRRLLV---DRSLRG---VTHVIVDEIHERG-MNEDFLLI--VLKELLPRRP 445 (1009)
Q Consensus 383 r------~e~~~~--~~t~Iiv~T~g~Ll~~L~~---~~~l~~---is~IIIDEaHeR~-~~~d~ll~--llk~ll~~~~ 445 (1009)
. +..... ...+|+|.||+.+...-.- ...+.. +..+||||||+-+ +.-||... .+..+..+.+
T Consensus 340 ~~~~~~i~q~l~~~~~~ikilYvtPE~v~~~~~l~~~~~~L~~~~~lal~vIDEAHCVSqWgHdFRp~Yk~l~~l~~~~~ 419 (941)
T KOG0351|consen 340 AAERLAILQKLANGNPIIKILYVTPEKVVASEGLLESLADLYARGLLALFVIDEAHCVSQWGHDFRPSYKRLGLLRIRFP 419 (941)
T ss_pred HHHHHHHHHHHhCCCCeEEEEEeCHHHhhcccchhhHHHhccCCCeeEEEEecHHHHhhhhcccccHHHHHHHHHHhhCC
Confidence 1 111122 3579999999877532111 113333 8899999999632 22233222 2334445667
Q ss_pred CCcEEEeccCCCHH---HHHhhhC--CCCeeccCCcccceeeEehhhHHHHhhhccCcccccccchhhhHHHHHHHHHHH
Q 001817 446 ELRLILMSATLNAE---LFSSYFG--GAPMLHIPGFTYPVRAYFLENILEMTRYRLNTYNQIDDYGQEKSWKMQKQALAL 520 (1009)
Q Consensus 446 ~lkvIlmSATl~~~---~~~~yf~--~~pvi~i~g~~~pv~~~yl~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 520 (1009)
...+|++|||.... ++.+-++ ++++ ....+.-| ..+|.
T Consensus 420 ~vP~iALTATAT~~v~~DIi~~L~l~~~~~-~~~sfnR~-NL~ye----------------------------------- 462 (941)
T KOG0351|consen 420 GVPFIALTATATERVREDVIRSLGLRNPEL-FKSSFNRP-NLKYE----------------------------------- 462 (941)
T ss_pred CCCeEEeehhccHHHHHHHHHHhCCCCcce-ecccCCCC-CceEE-----------------------------------
Confidence 78899999998544 2222222 1111 00000000 00000
Q ss_pred HhhhhhHHHHHHHHHHHhhhcchhhhhhhccccCCCCCcchhhHHHHHHHHHhhcCCCcEEEEcCCHhHHHHHHHHHHcC
Q 001817 521 RKRKSSIASAVEDALEAADFREYSVQTQQSLSCWNPDSIGFNLIEHVLCHIVKKERPGAVLVFMTGWDDINSLKDQLQAH 600 (1009)
Q Consensus 521 ~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~~~~i~~l~~~L~~~ 600 (1009)
.. + ..+.+....++..+-...+.+.+||+|.++.+++.+...|...
T Consensus 463 ------------------------V~---------~-k~~~~~~~~~~~~~~~~~~~~s~IIYC~sr~~ce~vs~~L~~~ 508 (941)
T KOG0351|consen 463 ------------------------VS---------P-KTDKDALLDILEESKLRHPDQSGIIYCLSRKECEQVSAVLRSL 508 (941)
T ss_pred ------------------------EE---------e-ccCccchHHHHHHhhhcCCCCCeEEEeCCcchHHHHHHHHHHh
Confidence 00 0 0001112233444445567789999999999999999999987
Q ss_pred CCCCCCCCeEEEEecCCCCHHHHHhhcCCCCCCceEEEEecCccccccCCCCeeEEEeCCCCccccccCCCCCCcccccc
Q 001817 601 PLLGDPSRVLLLACHGSMASSEQRLIFDKPEDGVRKIVLATNMAETSITINDVVFVIDCGKAKETSYDALNNTPCLLPSW 680 (1009)
Q Consensus 601 ~~~~~~~~~~v~~lHs~l~~~er~~v~~~f~~G~~kVLVATniae~GIdIp~V~~VId~g~~k~~~yd~~~~~~~l~~~~ 680 (1009)
++....+|+||+..+|+.|...|-.++++||+||=...+|||-|||++||++++||
T Consensus 509 -------~~~a~~YHAGl~~~~R~~Vq~~w~~~~~~VivATVAFGMGIdK~DVR~ViH~~lPk----------------- 564 (941)
T KOG0351|consen 509 -------GKSAAFYHAGLPPKERETVQKAWMSDKIRVIVATVAFGMGIDKPDVRFVIHYSLPK----------------- 564 (941)
T ss_pred -------chhhHhhhcCCCHHHHHHHHHHHhcCCCeEEEEEeeccCCCCCCceeEEEECCCch-----------------
Confidence 56788999999999999999999999999999999999999999999999999999
Q ss_pred cCHHhHHhhhcccCCCC-CCcEEEecchhhhhhh
Q 001817 681 ISKAAARQRRGRAGRVQ-PGECYHLYPRYVYDAF 713 (1009)
Q Consensus 681 iS~as~~QR~GRAGR~~-~G~c~~Lys~~~~~~l 713 (1009)
|-..|.|-+|||||.| +-.|..+|+-.++..+
T Consensus 565 -s~E~YYQE~GRAGRDG~~s~C~l~y~~~D~~~l 597 (941)
T KOG0351|consen 565 -SFEGYYQEAGRAGRDGLPSSCVLLYGYADISEL 597 (941)
T ss_pred -hHHHHHHhccccCcCCCcceeEEecchhHHHHH
Confidence 8889999999999995 6899999998877553
No 101
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=99.83 E-value=4.7e-19 Score=220.41 Aligned_cols=122 Identities=16% Similarity=0.126 Sum_probs=101.7
Q ss_pred hhHHHHHHHHHhhcCCCcEEEEcCCHhHHHHHHHHHHcCCCCCCCCCeEEEEecCCCCHHHHHhhcCCCCC--CceEEEE
Q 001817 562 NLIEHVLCHIVKKERPGAVLVFMTGWDDINSLKDQLQAHPLLGDPSRVLLLACHGSMASSEQRLIFDKPED--GVRKIVL 639 (1009)
Q Consensus 562 ~li~~ll~~i~~~~~~g~iLVFl~~~~~i~~l~~~L~~~~~~~~~~~~~v~~lHs~l~~~er~~v~~~f~~--G~~kVLV 639 (1009)
+.+...+..+++.....++||||.++..+..+.+.|... .++.+..+||+|+..+|.++++.|++ |..+|||
T Consensus 478 d~Ki~~L~~~L~~~~~~KvLVF~~~~~t~~~L~~~L~~~------~Gi~~~~ihG~~s~~eR~~~~~~F~~~~~~~~VLI 551 (956)
T PRK04914 478 DPRVEWLIDFLKSHRSEKVLVICAKAATALQLEQALRER------EGIRAAVFHEGMSIIERDRAAAYFADEEDGAQVLL 551 (956)
T ss_pred CHHHHHHHHHHHhcCCCeEEEEeCcHHHHHHHHHHHhhc------cCeeEEEEECCCCHHHHHHHHHHHhcCCCCccEEE
Confidence 344555666777666789999999999999999999542 16778999999999999999999987 4699999
Q ss_pred ecCccccccCCCCeeEEEeCCCCccccccCCCCCCcccccccCHHhHHhhhcccCCCCC-C--cEEEecch
Q 001817 640 ATNMAETSITINDVVFVIDCGKAKETSYDALNNTPCLLPSWISKAAARQRRGRAGRVQP-G--ECYHLYPR 707 (1009)
Q Consensus 640 ATniae~GIdIp~V~~VId~g~~k~~~yd~~~~~~~l~~~~iS~as~~QR~GRAGR~~~-G--~c~~Lys~ 707 (1009)
||+++++|+|++.+++||++++|. +...|.||+||+||.|. | .+|.++.+
T Consensus 552 sTdvgseGlNlq~a~~VInfDlP~------------------nP~~~eQRIGR~~RiGQ~~~V~i~~~~~~ 604 (956)
T PRK04914 552 CSEIGSEGRNFQFASHLVLFDLPF------------------NPDLLEQRIGRLDRIGQKHDIQIHVPYLE 604 (956)
T ss_pred echhhccCCCcccccEEEEecCCC------------------CHHHHHHHhcccccCCCCceEEEEEccCC
Confidence 999999999999999999987775 77789999999999865 3 33444444
No 102
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=99.82 E-value=2.1e-20 Score=202.90 Aligned_cols=301 Identities=17% Similarity=0.216 Sum_probs=181.8
Q ss_pred eEEEechhHHHHHHHHHHHHHHHhC----Cccc--ceee-eeeeec-cccCCCcEEEEEccHHHHHHHhcCC-CCCCccE
Q 001817 347 CSIICTQPRRISAMAVSERVAAERG----EKLG--ESVG-YKVRLE-GMKGRDTRLMFCTTGILLRRLLVDR-SLRGVTH 417 (1009)
Q Consensus 347 ~~IvvtqPrR~La~qva~rva~e~~----~~~g--~~vG-y~vr~e-~~~~~~t~Iiv~T~g~Ll~~L~~~~-~l~~is~ 417 (1009)
+..+++.|.|+||.|+...+.+..- -.+- ..+| ...|.. ......++|+|+|||++++.+.... .+..+++
T Consensus 287 p~avivepsrelaEqt~N~i~~Fk~h~~np~~r~lLmiggv~~r~Q~~ql~~g~~ivvGtpgRl~~~is~g~~~lt~crF 366 (725)
T KOG0349|consen 287 PEAVIVEPSRELAEQTHNQIEEFKMHTSNPEVRSLLMIGGVLKRTQCKQLKDGTHIVVGTPGRLLQPISKGLVTLTHCRF 366 (725)
T ss_pred cceeEecCcHHHHHHHHhhHHHHHhhcCChhhhhhhhhhhHHhHHHHHHhhcCceeeecCchhhhhhhhccceeeeeeEE
Confidence 3567778999999999997765431 1111 1122 111111 1223569999999999999887665 7888999
Q ss_pred EEEeCCCcC-C-CcchHHHHHHHHHcccC---CCCcEEEeccCCCH---HHHHhhhCCCCeeccCCcccceeeEeh-hhH
Q 001817 418 VIVDEIHER-G-MNEDFLLIVLKELLPRR---PELRLILMSATLNA---ELFSSYFGGAPMLHIPGFTYPVRAYFL-ENI 488 (1009)
Q Consensus 418 IIIDEaHeR-~-~~~d~ll~llk~ll~~~---~~lkvIlmSATl~~---~~~~~yf~~~pvi~i~g~~~pv~~~yl-~~i 488 (1009)
+|+||++-. + .++|++..+-..+-... ..++.+++|||+.. ..+++- +++ ||.-+..- +|.
T Consensus 367 lvlDead~lL~qgy~d~I~r~h~qip~~tsdg~rlq~~vCsatlh~feVkk~~er-----vmh-----fptwVdLkgeD~ 436 (725)
T KOG0349|consen 367 LVLDEADLLLGQGYDDKIYRFHGQIPHMTSDGFRLQSPVCSATLHIFEVKKVGER-----VMH-----FPTWVDLKGEDL 436 (725)
T ss_pred EEecchhhhhhcccHHHHHHHhccchhhhcCCcccccceeeeEEeEEEeeehhhh-----hcc-----CceeEecccccc
Confidence 999999942 1 45566555544443322 35789999999832 222211 111 22211110 000
Q ss_pred H-HHhhhccCcccccccchhhhHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhcchhhhhhhccccCCCCCcchhhHHHH
Q 001817 489 L-EMTRYRLNTYNQIDDYGQEKSWKMQKQALALRKRKSSIASAVEDALEAADFREYSVQTQQSLSCWNPDSIGFNLIEHV 567 (1009)
Q Consensus 489 ~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~l 567 (1009)
. +....... +..-..+..|... .+.+.... ....+.+..........+....+
T Consensus 437 vpetvHhvv~----lv~p~~d~sw~~l-----------------r~~i~td~-----vh~kdn~~pg~~Spe~~s~a~ki 490 (725)
T KOG0349|consen 437 VPETVHHVVK----LVCPSVDGSWCDL-----------------RQFIETDK-----VHTKDNLLPGQVSPENPSSATKI 490 (725)
T ss_pred cchhhcccee----ecCCccCccHHHH-----------------hhhhccCC-----cccccccccccCCCCChhhhhHH
Confidence 0 00000000 0000011222221 11111100 00001110000000011111111
Q ss_pred H-----HHHHhhcCCCcEEEEcCCHhHHHHHHHHHHcCCCCCCCCCeEEEEecCCCCHHHHHhhcCCCCCCceEEEEecC
Q 001817 568 L-----CHIVKKERPGAVLVFMTGWDDINSLKDQLQAHPLLGDPSRVLLLACHGSMASSEQRLIFDKPEDGVRKIVLATN 642 (1009)
Q Consensus 568 l-----~~i~~~~~~g~iLVFl~~~~~i~~l~~~L~~~~~~~~~~~~~v~~lHs~l~~~er~~v~~~f~~G~~kVLVATn 642 (1009)
+ ....+.....+++|||.++.++..+.+++.... ...+.+..+||+..++||+.-++.|+.+..+.||||+
T Consensus 491 lkgEy~v~ai~~h~mdkaiifcrtk~dcDnLer~~~qkg----g~~~scvclhgDrkP~Erk~nle~Fkk~dvkflictd 566 (725)
T KOG0349|consen 491 LKGEYGVVAIRRHAMDKAIIFCRTKQDCDNLERMMNQKG----GKHYSCVCLHGDRKPDERKANLESFKKFDVKFLICTD 566 (725)
T ss_pred hcCchhhhhhhhhccCceEEEEeccccchHHHHHHHHcC----CccceeEEEecCCChhHHHHHHHhhhhcCeEEEEEeh
Confidence 1 122344456789999999999999999998752 2368899999999999999999999999999999999
Q ss_pred ccccccCCCCeeEEEeCCCCccccccCCCCCCcccccccCHHhHHhhhcccCCC-CCCcEEEec
Q 001817 643 MAETSITINDVVFVIDCGKAKETSYDALNNTPCLLPSWISKAAARQRRGRAGRV-QPGECYHLY 705 (1009)
Q Consensus 643 iae~GIdIp~V~~VId~g~~k~~~yd~~~~~~~l~~~~iS~as~~QR~GRAGR~-~~G~c~~Ly 705 (1009)
+|++|+||.++-|+||.-+|. .+.+|.||+||.||. +-|..+.|.
T Consensus 567 vaargldi~g~p~~invtlpd------------------~k~nyvhrigrvgraermglaislv 612 (725)
T KOG0349|consen 567 VAARGLDITGLPFMINVTLPD------------------DKTNYVHRIGRVGRAERMGLAISLV 612 (725)
T ss_pred hhhccccccCCceEEEEecCc------------------ccchhhhhhhccchhhhcceeEEEe
Confidence 999999999999999988887 566999999999998 458888774
No 103
>PF07717 OB_NTP_bind: Oligonucleotide/oligosaccharide-binding (OB)-fold; InterPro: IPR011709 This domain is found towards the C terminus of the DEAD-box helicases (IPR011545 from INTERPRO). In these helicases it appears to be always found in association with IPR007502 from INTERPRO. ; PDB: 3I4U_A 2XAU_B 3KX2_B.
Probab=99.79 E-value=9.7e-20 Score=174.09 Aligned_cols=106 Identities=30% Similarity=0.508 Sum_probs=76.6
Q ss_pred HHHHHHHHHcCCCCCCCc-------CCCCCCCCHHHHHHHHHhccCCCccccccccccceeEeec-CCEEEEecCCCCCC
Q 001817 887 KQFLFLLKDAGLVDRNTE-------NCNKWSHDEHLIRAVICAGLFPGLCSVVNKEKSIALKTME-DGQVLLYSNSVNAG 958 (1009)
Q Consensus 887 ~ql~~~l~~~~~~~~~~~-------~~~~~s~~~~~i~~~l~ag~~pnva~~~~~~~~~~~~~~~-~~~v~ihpsSv~~~ 958 (1009)
+||.++|++.|++..+.. ..+.+..++.+|++|||+|||||||+.. +...|++.. +..|.|||+||+++
T Consensus 1 ~QL~~il~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~aG~~~nvA~~~---~~~~y~~~~~~~~v~iHPsS~l~~ 77 (114)
T PF07717_consen 1 KQLLRILERIGFVPQSASSQSISQRPPNENRDQWELIRAALCAGFYPNVARRD---NKGSYKTLSNGQPVFIHPSSVLFK 77 (114)
T ss_dssp HHHHHHHHHTT----------TTST-----HTHCHHHHHHHHHHHCCCEEEE----TTSSEEETTTG-EEEE-TTSTTTT
T ss_pred CHHHHHHHHcCCCCCccccccccccccccccccHHHHHHHHHHhhhhheEEeC---CCCCEEEecCCCEEEEecCccccc
Confidence 599999999999764321 1122225679999999999999999765 235699884 44699999999964
Q ss_pred CCCCCCCeEEEeeehhcccceeeeccccCHHHHHHhcCcc
Q 001817 959 VPKIPYPWLVFNEKIKVNSVFLRDSTGVSDSVLLLFGGNI 998 (1009)
Q Consensus 959 ~~~~~~~~vvy~e~~~t~~~~ir~~t~v~~~~l~lfgg~~ 998 (1009)
. +++||||+|+++|++.|||+||+|+|.||++|||++
T Consensus 78 ~---~p~~vvy~e~~~t~k~y~~~~t~I~~~wl~~~~~~~ 114 (114)
T PF07717_consen 78 K---PPKWVVYHELVRTSKPYMRDVTAISPEWLLLFAPHY 114 (114)
T ss_dssp T---T-SEEEEEEEEESSSEEEEEEEE--HHHHHHH-TTT
T ss_pred c---ccccchhhhheecCCcEEEECcCCCHHHHHHHcccC
Confidence 3 468999999999999999999999999999999985
No 104
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=99.79 E-value=2.9e-18 Score=183.49 Aligned_cols=270 Identities=19% Similarity=0.179 Sum_probs=172.3
Q ss_pred HHHHHHHHHHcCCeEEEEecCCCchhhhHHHHHHHHHHHHhcCCceEEEechhHHHHHHHHHHHHHHHhCCcccceeeee
Q 001817 302 ERDALLKAISENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERGEKLGESVGYK 381 (1009)
Q Consensus 302 ~q~~il~~l~~~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~IvvtqPrR~La~qva~rva~e~~~~~g~~vGy~ 381 (1009)
.|.+.+.+...+.++++..|||.||++++.++.+- ......++| |...|....--.+.+ +|......-.-.
T Consensus 98 lq~~ain~~ma~ed~~lil~tgggkslcyqlpal~------adg~alvi~--plislmedqil~lkq-lgi~as~lnans 168 (695)
T KOG0353|consen 98 LQLAAINATMAGEDAFLILPTGGGKSLCYQLPALC------ADGFALVIC--PLISLMEDQILQLKQ-LGIDASMLNANS 168 (695)
T ss_pred hHHHHhhhhhccCceEEEEeCCCccchhhhhhHHh------cCCceEeec--hhHHHHHHHHHHHHH-hCcchhhccCcc
Confidence 46777888889999999999999999998888764 122334555 998887654444422 222211100000
Q ss_pred -----eeec---cccCCCcEEEEEccHHHH------HHHhcCCCCCCccEEEEeCCCc-----CCCcchH-HHHHHHHHc
Q 001817 382 -----VRLE---GMKGRDTRLMFCTTGILL------RRLLVDRSLRGVTHVIVDEIHE-----RGMNEDF-LLIVLKELL 441 (1009)
Q Consensus 382 -----vr~e---~~~~~~t~Iiv~T~g~Ll------~~L~~~~~l~~is~IIIDEaHe-----R~~~~d~-ll~llk~ll 441 (1009)
-+.+ ......-+++|.||+.+. +.|...-....+.+|-|||+|+ .+...|. .+++|++
T Consensus 169 ske~~k~v~~~i~nkdse~kliyvtpekiaksk~~mnkleka~~~~~~~~iaidevhccsqwghdfr~dy~~l~ilkr-- 246 (695)
T KOG0353|consen 169 SKEEAKRVEAAITNKDSEFKLIYVTPEKIAKSKKFMNKLEKALEAGFFKLIAIDEVHCCSQWGHDFRPDYKALGILKR-- 246 (695)
T ss_pred cHHHHHHHHHHHcCCCceeEEEEecHHHHHHHHHHHHHHHHHhhcceeEEEeecceeehhhhCcccCcchHHHHHHHH--
Confidence 0011 012234689999998764 3333233566788999999995 2233332 3344443
Q ss_pred ccCCCCcEEEeccCCCHHHHH---hhhCCC------CeeccCCcccceeeEehhhHHHHhhhccCcccccccchhhhHHH
Q 001817 442 PRRPELRLILMSATLNAELFS---SYFGGA------PMLHIPGFTYPVRAYFLENILEMTRYRLNTYNQIDDYGQEKSWK 512 (1009)
Q Consensus 442 ~~~~~lkvIlmSATl~~~~~~---~yf~~~------pvi~i~g~~~pv~~~yl~~i~~~~~~~~~~~~~i~~~~~~~~~~ 512 (1009)
..++..+|+++||.....+. +.++-. .-+..|...|.|..
T Consensus 247 -qf~~~~iigltatatn~vl~d~k~il~ie~~~tf~a~fnr~nl~yev~q------------------------------ 295 (695)
T KOG0353|consen 247 -QFKGAPIIGLTATATNHVLDDAKDILCIEAAFTFRAGFNRPNLKYEVRQ------------------------------ 295 (695)
T ss_pred -hCCCCceeeeehhhhcchhhHHHHHHhHHhhheeecccCCCCceeEeee------------------------------
Confidence 56777899999997433211 111100 00000000000000
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHhhhcchhhhhhhccccCCCCCcchhhHHHHHHHHHhhcCCCcEEEEcCCHhHHHH
Q 001817 513 MQKQALALRKRKSSIASAVEDALEAADFREYSVQTQQSLSCWNPDSIGFNLIEHVLCHIVKKERPGAVLVFMTGWDDINS 592 (1009)
Q Consensus 513 ~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~~~~i~~ 592 (1009)
.| ....+-++++...|-....+...+|+|-++.+++.
T Consensus 296 ------------------------------------------kp-~n~dd~~edi~k~i~~~f~gqsgiiyc~sq~d~ek 332 (695)
T KOG0353|consen 296 ------------------------------------------KP-GNEDDCIEDIAKLIKGDFAGQSGIIYCFSQKDCEK 332 (695)
T ss_pred ------------------------------------------CC-CChHHHHHHHHHHhccccCCCcceEEEeccccHHH
Confidence 00 00011122223333333345578999999999999
Q ss_pred HHHHHHcCCCCCCCCCeEEEEecCCCCHHHHHhhcCCCCCCceEEEEecCccccccCCCCeeEEEeCCCCc
Q 001817 593 LKDQLQAHPLLGDPSRVLLLACHGSMASSEQRLIFDKPEDGVRKIVLATNMAETSITINDVVFVIDCGKAK 663 (1009)
Q Consensus 593 l~~~L~~~~~~~~~~~~~v~~lHs~l~~~er~~v~~~f~~G~~kVLVATniae~GIdIp~V~~VId~g~~k 663 (1009)
++..|+.+ ++....+|+.|.++++.-+-+.+-.|++.|||||-...+|||-|+|++||+-.+||
T Consensus 333 va~alkn~-------gi~a~~yha~lep~dks~~hq~w~a~eiqvivatvafgmgidkpdvrfvihhsl~k 396 (695)
T KOG0353|consen 333 VAKALKNH-------GIHAGAYHANLEPEDKSGAHQGWIAGEIQVIVATVAFGMGIDKPDVRFVIHHSLPK 396 (695)
T ss_pred HHHHHHhc-------CccccccccccCccccccccccccccceEEEEEEeeecccCCCCCeeEEEecccch
Confidence 99999988 77788999999999999999999999999999999999999999999999999998
No 105
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.79 E-value=1.4e-18 Score=177.85 Aligned_cols=168 Identities=19% Similarity=0.204 Sum_probs=116.0
Q ss_pred HHHHhhcCCCCHHHHHHHHHHHHcCCeEEEEecCCCchhhhHHHHHHHHHHHHhcCCceEEEechhHHHHHHHHHHHHHH
Q 001817 289 KMLEFRRSLPSYKERDALLKAISENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAA 368 (1009)
Q Consensus 289 ~l~~~r~~LPi~~~q~~il~~l~~~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~IvvtqPrR~La~qva~rva~ 368 (1009)
.+..-...-|...|++.|..+|. |-+++.+|..|-|||.++.+..++.+.. -...+.++|.-.||+||-|+......
T Consensus 56 aivdcgfehpsevqhecipqail-gmdvlcqaksgmgktavfvl~tlqqiep--v~g~vsvlvmchtrelafqi~~ey~r 132 (387)
T KOG0329|consen 56 AIVDCGFEHPSEVQHECIPQAIL-GMDVLCQAKSGMGKTAVFVLATLQQIEP--VDGQVSVLVMCHTRELAFQISKEYER 132 (387)
T ss_pred HHHhccCCCchHhhhhhhhHHhh-cchhheecccCCCceeeeehhhhhhcCC--CCCeEEEEEEeccHHHHHHHHHHHHH
Confidence 44444566799999999999994 5677889999999999999888876632 22355666666999999999765544
Q ss_pred ---Hh-CCcccceee-eeeeecc-ccCCCcEEEEEccHHHHHHHhcCC-CCCCccEEEEeCCCcCCCcchHHHHHHHHHc
Q 001817 369 ---ER-GEKLGESVG-YKVRLEG-MKGRDTRLMFCTTGILLRRLLVDR-SLRGVTHVIVDEIHERGMNEDFLLIVLKELL 441 (1009)
Q Consensus 369 ---e~-~~~~g~~vG-y~vr~e~-~~~~~t~Iiv~T~g~Ll~~L~~~~-~l~~is~IIIDEaHeR~~~~d~ll~llk~ll 441 (1009)
.+ +.++....| ..+..+. ....-++|+|+|||+++.+..+.. .++++.++|+|||+..--..|....+-....
T Consensus 133 fskymP~vkvaVFfGG~~Ikkdee~lk~~PhivVgTPGrilALvr~k~l~lk~vkhFvlDEcdkmle~lDMrRDvQEifr 212 (387)
T KOG0329|consen 133 FSKYMPSVKVSVFFGGLFIKKDEELLKNCPHIVVGTPGRILALVRNRSLNLKNVKHFVLDECDKMLEQLDMRRDVQEIFR 212 (387)
T ss_pred HHhhCCCceEEEEEcceeccccHHHHhCCCeEEEcCcHHHHHHHHhccCchhhcceeehhhHHHHHHHHHHHHHHHHHhh
Confidence 33 222222222 2232221 112357999999999999888766 8999999999999964333344433333333
Q ss_pred ccCCCCcEEEeccCCCHH
Q 001817 442 PRRPELRLILMSATLNAE 459 (1009)
Q Consensus 442 ~~~~~lkvIlmSATl~~~ 459 (1009)
....+-|+..+|||++.+
T Consensus 213 ~tp~~KQvmmfsatlske 230 (387)
T KOG0329|consen 213 MTPHEKQVMMFSATLSKE 230 (387)
T ss_pred cCcccceeeeeeeecchh
Confidence 344567899999999655
No 106
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=99.76 E-value=1.7e-17 Score=205.64 Aligned_cols=312 Identities=22% Similarity=0.194 Sum_probs=180.5
Q ss_pred CCHHHHHHHHHHHHc---CC-eEEEEecCCCchhhhHHHHHHHHHHHHhcCCceEEEechhHHHHHHHHHHHHHHHhCCc
Q 001817 298 PSYKERDALLKAISE---NQ-VVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERGEK 373 (1009)
Q Consensus 298 Pi~~~q~~il~~l~~---~~-~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~IvvtqPrR~La~qva~rva~e~~~~ 373 (1009)
+.+..|..+++.+.. .. .+++.||||+|||++...+.+...... .....+++++.|+|.++.++++++....+..
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~vl~aPTG~GKT~asl~~a~~~~~~~-~~~~~r~i~vlP~~t~ie~~~~r~~~~~~~~ 273 (733)
T COG1203 195 EGYELQEKALELILRLEKRSLLVVLEAPTGYGKTEASLILALALLDEK-IKLKSRVIYVLPFRTIIEDMYRRAKEIFGLF 273 (733)
T ss_pred hhhHHHHHHHHHHHhcccccccEEEEeCCCCChHHHHHHHHHHHhhcc-ccccceEEEEccHHHHHHHHHHHHHhhhccc
Confidence 445555666665543 45 889999999999999888777655432 2256789999999999999999998765432
Q ss_pred c--cc-eeeeeee---ecc-------------ccCCCcEEEEEccHHHHHHHhcCC-CC----CCccEEEEeCCCcCCCc
Q 001817 374 L--GE-SVGYKVR---LEG-------------MKGRDTRLMFCTTGILLRRLLVDR-SL----RGVTHVIVDEIHERGMN 429 (1009)
Q Consensus 374 ~--g~-~vGy~vr---~e~-------------~~~~~t~Iiv~T~g~Ll~~L~~~~-~l----~~is~IIIDEaHeR~~~ 429 (1009)
. +. ..|.... .+. ....-..+.++||-..+....... .. -..+++|+||+|-..-+
T Consensus 274 ~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~S~vIlDE~h~~~~~ 353 (733)
T COG1203 274 SVIGKSLHSSSKEPLLLEPDQDILLTLTTNDSYKKLLLALIVVTPIQILIFSVKGFKFEFLALLLTSLVILDEVHLYADE 353 (733)
T ss_pred ccccccccccccchhhhccccccceeEEecccccceeccccccCHhHhhhhhccccchHHHHHHHhhchhhccHHhhccc
Confidence 2 22 1221000 000 000111233344333332111111 11 23478999999963333
Q ss_pred --chHHHHHHHHHcccCCCCcEEEeccCCCHH---HHHhhhCCCCeeccCCcccceeeEehhhHHHHhhhccCccccccc
Q 001817 430 --EDFLLIVLKELLPRRPELRLILMSATLNAE---LFSSYFGGAPMLHIPGFTYPVRAYFLENILEMTRYRLNTYNQIDD 504 (1009)
Q Consensus 430 --~d~ll~llk~ll~~~~~lkvIlmSATl~~~---~~~~yf~~~pvi~i~g~~~pv~~~yl~~i~~~~~~~~~~~~~i~~ 504 (1009)
.-++++++..+ ..-+.++|+||||++.. .+.++++............|... .
T Consensus 354 ~~~~~l~~~i~~l--~~~g~~ill~SATlP~~~~~~l~~~~~~~~~~~~~~~~~~~~~---------------------e 410 (733)
T COG1203 354 TMLAALLALLEAL--AEAGVPVLLMSATLPPFLKEKLKKALGKGREVVENAKFCPKED---------------------E 410 (733)
T ss_pred chHHHHHHHHHHH--HhCCCCEEEEecCCCHHHHHHHHHHHhcccceecccccccccc---------------------c
Confidence 22333333332 23467899999999764 33344432111111000000000 0
Q ss_pred chhhhHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhcchhhhhhhccccCCCCCcchhhHHHHHHHHHhhcCCCcEEEEc
Q 001817 505 YGQEKSWKMQKQALALRKRKSSIASAVEDALEAADFREYSVQTQQSLSCWNPDSIGFNLIEHVLCHIVKKERPGAVLVFM 584 (1009)
Q Consensus 505 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl 584 (1009)
... .++ ....+++... .. ....+. ..-..+++++|-+
T Consensus 411 ~~~--------------~~~--~~~~~~~~~~------------------------~~-~~~~~~--~~~~~~~kvlvI~ 447 (733)
T COG1203 411 PGL--------------KRK--ERVDVEDGPQ------------------------EE-LIELIS--EEVKEGKKVLVIV 447 (733)
T ss_pred ccc--------------ccc--cchhhhhhhh------------------------Hh-hhhcch--hhhccCCcEEEEE
Confidence 000 000 0000000000 00 000011 1123467999999
Q ss_pred CCHhHHHHHHHHHHcCCCCCCCCCeEEEEecCCCCHHHHHhhcCCC----CCCceEEEEecCccccccCCCCeeEEEeCC
Q 001817 585 TGWDDINSLKDQLQAHPLLGDPSRVLLLACHGSMASSEQRLIFDKP----EDGVRKIVLATNMAETSITINDVVFVIDCG 660 (1009)
Q Consensus 585 ~~~~~i~~l~~~L~~~~~~~~~~~~~v~~lHs~l~~~er~~v~~~f----~~G~~kVLVATniae~GIdIp~V~~VId~g 660 (1009)
||+..|.++++.|+.... .+..+||.+...+|.+.++.. ..+.-.|+|||++.|.|+||. .+++|
T Consensus 448 NTV~~Aie~Y~~Lk~~~~-------~v~LlHSRf~~~dR~~ke~~l~~~~~~~~~~IvVaTQVIEagvDid-fd~mI--- 516 (733)
T COG1203 448 NTVDRAIELYEKLKEKGP-------KVLLLHSRFTLKDREEKERELKKLFKQNEGFIVVATQVIEAGVDID-FDVLI--- 516 (733)
T ss_pred ecHHHHHHHHHHHHhcCC-------CEEEEecccchhhHHHHHHHHHHHHhccCCeEEEEeeEEEEEeccc-cCeee---
Confidence 999999999999998621 589999999999998876632 456778999999999999995 66666
Q ss_pred CCccccccCCCCCCcccccccCHHhHHhhhcccCCCC---CCcEEEe
Q 001817 661 KAKETSYDALNNTPCLLPSWISKAAARQRRGRAGRVQ---PGECYHL 704 (1009)
Q Consensus 661 ~~k~~~yd~~~~~~~l~~~~iS~as~~QR~GRAGR~~---~G~c~~L 704 (1009)
+...+..+.+||+||.+|.+ +|..|..
T Consensus 517 -----------------Te~aPidSLIQR~GRv~R~g~~~~~~~~v~ 546 (733)
T COG1203 517 -----------------TELAPIDSLIQRAGRVNRHGKKENGKIYVY 546 (733)
T ss_pred -----------------ecCCCHHHHHHHHHHHhhcccccCCceeEe
Confidence 24456778899999999997 4665555
No 107
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.75 E-value=2.9e-17 Score=199.32 Aligned_cols=124 Identities=19% Similarity=0.130 Sum_probs=86.2
Q ss_pred CCCCHHHHHHHHHHHHcCCeEEEEecCCCchhhhHHHHHHHHHHHHhcCCceEEEechhHHHHHHHHHHHHHHHhCCccc
Q 001817 296 SLPSYKERDALLKAISENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERGEKLG 375 (1009)
Q Consensus 296 ~LPi~~~q~~il~~l~~~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~IvvtqPrR~La~qva~rva~e~~~~~g 375 (1009)
.|-...+--+++-++.-++--|..++||+|||+++.++++..++. |.+ +.|+.|++.||.|.++.+.... ..+|
T Consensus 78 ~lg~~~ydvQliGg~~Lh~G~Iaem~TGeGKTL~a~Lpa~~~al~---G~~--V~VvTpn~yLA~qd~e~m~~l~-~~lG 151 (896)
T PRK13104 78 TLGLRHFDVQLIGGMVLHEGNIAEMRTGEGKTLVATLPAYLNAIS---GRG--VHIVTVNDYLAKRDSQWMKPIY-EFLG 151 (896)
T ss_pred HcCCCcchHHHhhhhhhccCccccccCCCCchHHHHHHHHHHHhc---CCC--EEEEcCCHHHHHHHHHHHHHHh-cccC
Confidence 333333344466666556666889999999999999999876643 333 5556699999999999886654 3345
Q ss_pred ceeeeeeeec----cccCCCcEEEEEccHHH-HHHHhcCC--CC-----CCccEEEEeCCCc
Q 001817 376 ESVGYKVRLE----GMKGRDTRLMFCTTGIL-LRRLLVDR--SL-----RGVTHVIVDEIHE 425 (1009)
Q Consensus 376 ~~vGy~vr~e----~~~~~~t~Iiv~T~g~L-l~~L~~~~--~l-----~~is~IIIDEaHe 425 (1009)
..||.-.... ....-.++|+|+|||.| ++.|..+. .+ ..+.++||||||.
T Consensus 152 Ltv~~i~gg~~~~~r~~~y~~dIvygT~grlgfDyLrd~~~~~~~~~v~r~l~~~IvDEaDs 213 (896)
T PRK13104 152 LTVGVIYPDMSHKEKQEAYKADIVYGTNNEYGFDYLRDNMAFSLTDKVQRELNFAIVDEVDS 213 (896)
T ss_pred ceEEEEeCCCCHHHHHHHhCCCEEEECChhhhHHHHhcCCccchHhhhccccceEEeccHhh
Confidence 5566433221 11223589999999999 88876553 22 5899999999994
No 108
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.75 E-value=2.7e-17 Score=193.83 Aligned_cols=371 Identities=16% Similarity=0.217 Sum_probs=202.2
Q ss_pred CCHHHHHHHHH---HHHc-CCeEEEEecCCCchhhhHHHHHHHHHHHHhcCCceEEEechhHHHHHHHHHHHHHHHhCCc
Q 001817 298 PSYKERDALLK---AISE-NQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERGEK 373 (1009)
Q Consensus 298 Pi~~~q~~il~---~l~~-~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~IvvtqPrR~La~qva~rva~e~~~~ 373 (1009)
|-+.|+.+|-. ++.+ ++.+++++.||+|||..+.++|- .++. .+...+|++++-|++|..|.+..+...+-.
T Consensus 166 ~RyyQ~~AI~rv~Eaf~~g~~raLlvMATGTGKTrTAiaii~-rL~r--~~~~KRVLFLaDR~~Lv~QA~~af~~~~P~- 241 (875)
T COG4096 166 PRYYQIIAIRRVIEAFSKGQNRALLVMATGTGKTRTAIAIID-RLIK--SGWVKRVLFLADRNALVDQAYGAFEDFLPF- 241 (875)
T ss_pred chHHHHHHHHHHHHHHhcCCceEEEEEecCCCcceeHHHHHH-HHHh--cchhheeeEEechHHHHHHHHHHHHHhCCC-
Confidence 33455554433 3333 45689999999999977776554 4444 344568999999999999988877665421
Q ss_pred ccceeeeeeeeccccCCCcEEEEEccHHHHHHHhcC-C-----CCCCccEEEEeCCCcCCCcchHHHHHHHHHcccCCCC
Q 001817 374 LGESVGYKVRLEGMKGRDTRLMFCTTGILLRRLLVD-R-----SLRGVTHVIVDEIHERGMNEDFLLIVLKELLPRRPEL 447 (1009)
Q Consensus 374 ~g~~vGy~vr~e~~~~~~t~Iiv~T~g~Ll~~L~~~-~-----~l~~is~IIIDEaHeR~~~~d~ll~llk~ll~~~~~l 447 (1009)
+..+. .-.+......++|.++|...+...+... . ....+++||||||| ||+..+.- .++..+ ...
T Consensus 242 -~~~~n--~i~~~~~~~s~~i~lsTyqt~~~~~~~~~~~~~~f~~g~FDlIvIDEaH-Rgi~~~~~-~I~dYF----dA~ 312 (875)
T COG4096 242 -GTKMN--KIEDKKGDTSSEIYLSTYQTMTGRIEQKEDEYRRFGPGFFDLIVIDEAH-RGIYSEWS-SILDYF----DAA 312 (875)
T ss_pred -cccee--eeecccCCcceeEEEeehHHHHhhhhccccccccCCCCceeEEEechhh-hhHHhhhH-HHHHHH----HHH
Confidence 11111 1111122235899999999988777554 1 45669999999999 87776532 222222 222
Q ss_pred cEEEeccCCCHH---HHHhhhCCCCeeccC-------CcccceeeEehhhHHHHhhhccCcccccccchhhhHHHHHHHH
Q 001817 448 RLILMSATLNAE---LFSSYFGGAPMLHIP-------GFTYPVRAYFLENILEMTRYRLNTYNQIDDYGQEKSWKMQKQA 517 (1009)
Q Consensus 448 kvIlmSATl~~~---~~~~yf~~~pvi~i~-------g~~~pv~~~yl~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 517 (1009)
.++++||+... .-..||+|.|+.... |..-|-.+.-.+--....|..+...+ +.
T Consensus 313 -~~gLTATP~~~~d~~T~~~F~g~Pt~~YsleeAV~DGfLvpy~vi~i~~~~~~~G~~~~~~s-------er-------- 376 (875)
T COG4096 313 -TQGLTATPKETIDRSTYGFFNGEPTYAYSLEEAVEDGFLVPYKVIRIDTDFDLDGWKPDAGS-------ER-------- 376 (875)
T ss_pred -HHhhccCcccccccccccccCCCcceeecHHHHhhccccCCCCceEEeeeccccCcCcCccc-------hh--------
Confidence 45559998332 234578666554321 22211111100000001111111000 00
Q ss_pred HHHHhhhhhHHHHHHHHHHHhhhcchhhhhhhccccCCCCCcchhhHHHHHHHHHhh--cC--CCcEEEEcCCHhHHHHH
Q 001817 518 LALRKRKSSIASAVEDALEAADFREYSVQTQQSLSCWNPDSIGFNLIEHVLCHIVKK--ER--PGAVLVFMTGWDDINSL 593 (1009)
Q Consensus 518 ~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~--~~--~g~iLVFl~~~~~i~~l 593 (1009)
.....+.+. . +-..|.. ..+.....-....+.+...+.+.++. .. .+++||||.+..+++.+
T Consensus 377 ------ek~~g~~i~----~-dd~~~~~---~d~dr~~v~~~~~~~V~r~~~~~l~~~~~g~~~~KTIvFa~n~dHAe~i 442 (875)
T COG4096 377 ------EKLQGEAID----E-DDQNFEA---RDFDRTLVIPFRTETVARELTEYLKRGATGDEIGKTIVFAKNHDHAERI 442 (875)
T ss_pred ------hhhhccccC----c-ccccccc---cccchhccccchHHHHHHHHHHHhccccCCCccCceEEEeeCcHHHHHH
Confidence 000000000 0 0000000 00000000111223455566666665 22 57999999999999999
Q ss_pred HHHHHcCCCCCCCCCeEEEEecCCCCHHHHHhhcCCC-CCCceEEEEecCccccccCCCCeeEEEeCCCCccccccCCCC
Q 001817 594 KDQLQAHPLLGDPSRVLLLACHGSMASSEQRLIFDKP-EDGVRKIVLATNMAETSITINDVVFVIDCGKAKETSYDALNN 672 (1009)
Q Consensus 594 ~~~L~~~~~~~~~~~~~v~~lHs~l~~~er~~v~~~f-~~G~~kVLVATniae~GIdIp~V~~VId~g~~k~~~yd~~~~ 672 (1009)
.+.|.+.... ..+--+..+.|.-... |..+-.-+ ++..-+|.++.+++.||||+|.|..+|-.-..+
T Consensus 443 ~~~~~~~ype--~~~~~a~~IT~d~~~~-q~~Id~f~~ke~~P~IaitvdlL~TGiDvpev~nlVF~r~Vr--------- 510 (875)
T COG4096 443 REALVNEYPE--YNGRYAMKITGDAEQA-QALIDNFIDKEKYPRIAITVDLLTTGVDVPEVVNLVFDRKVR--------- 510 (875)
T ss_pred HHHHHHhCcc--ccCceEEEEeccchhh-HHHHHHHHhcCCCCceEEehhhhhcCCCchheeeeeehhhhh---------
Confidence 9999875222 2223355555554333 33322111 344568999999999999999998888644444
Q ss_pred CCcccccccCHHhHHhhhcccCCCCC--C-----c-EEEecc---hhhhhhhccCCCccccccCchhhhhH
Q 001817 673 TPCLLPSWISKAAARQRRGRAGRVQP--G-----E-CYHLYP---RYVYDAFADYQLPELLRTPLQSLCLQ 732 (1009)
Q Consensus 673 ~~~l~~~~iS~as~~QR~GRAGR~~~--G-----~-c~~Lys---~~~~~~l~~~~~PEi~r~~L~~~~L~ 732 (1009)
|+.-|+||+||+-|..+ | + .|.+|. .-.|-.+.....++-.+.+++.=++.
T Consensus 511 ---------SktkF~QMvGRGTRl~~~~~~~~~dK~~F~ifDf~~~~~~~~~~~~~~e~~~~~~l~~rLF~ 572 (875)
T COG4096 511 ---------SKTKFKQMVGRGTRLCPDLGGPEQDKEFFTIFDFVDNTEYFEMDPEMREGRVRVSLEQRLFA 572 (875)
T ss_pred ---------hHHHHHHHhcCccccCccccCccccceeEEEEEhhhhhhhhccCcccccccccchHHHHHhh
Confidence 99999999999999854 3 3 233433 22233344444555555555443333
No 109
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=99.71 E-value=8.7e-16 Score=188.70 Aligned_cols=153 Identities=16% Similarity=0.150 Sum_probs=93.6
Q ss_pred cCCCCHHHHHHHHHHH---Hc------CCeEEEEecCCCchhhhHHHHHHHHHHHHhcCCceEEEechhHHHHHHHHHHH
Q 001817 295 RSLPSYKERDALLKAI---SE------NQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSER 365 (1009)
Q Consensus 295 ~~LPi~~~q~~il~~l---~~------~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~IvvtqPrR~La~qva~r 365 (1009)
+..|.+.|..++-.++ .+ .+..+|..+||||||..+...+. .+.. .....+|++++||+.|..|+.+.
T Consensus 236 k~~~r~~Q~~av~~~~~~~~~~~~~~~~~~gli~~~TGsGKT~t~~~la~-~l~~--~~~~~~vl~lvdR~~L~~Q~~~~ 312 (667)
T TIGR00348 236 KPYQRYMQYRAVKKIVESITRKTWGKDERGGLIWHTQGSGKTLTMLFAAR-KALE--LLKNPKVFFVVDRRELDYQLMKE 312 (667)
T ss_pred eeehHHHHHHHHHHHHHHHHhcccCCCCceeEEEEecCCCccHHHHHHHH-HHHh--hcCCCeEEEEECcHHHHHHHHHH
Confidence 4556777766654443 22 36799999999999966654443 3332 23456888888999999999998
Q ss_pred HHHHhCCcccceeeeeeee-ccccCCCcEEEEEccHHHHHHHhcC--C-CCCCc-cEEEEeCCCcCCCcchHHHHHHHHH
Q 001817 366 VAAERGEKLGESVGYKVRL-EGMKGRDTRLMFCTTGILLRRLLVD--R-SLRGV-THVIVDEIHERGMNEDFLLIVLKEL 440 (1009)
Q Consensus 366 va~e~~~~~g~~vGy~vr~-e~~~~~~t~Iiv~T~g~Ll~~L~~~--~-~l~~i-s~IIIDEaHeR~~~~d~ll~llk~l 440 (1009)
+........ ..++..-.+ ......+..|+|+|.+.+.+.+... + ....- .+||+|||| |+...++ ...++.
T Consensus 313 f~~~~~~~~-~~~~s~~~L~~~l~~~~~~iivtTiQk~~~~~~~~~~~~~~~~~~~lvIvDEaH-rs~~~~~-~~~l~~- 388 (667)
T TIGR00348 313 FQSLQKDCA-ERIESIAELKRLLEKDDGGIIITTIQKFDKKLKEEEEKFPVDRKEVVVIFDEAH-RSQYGEL-AKNLKK- 388 (667)
T ss_pred HHhhCCCCC-cccCCHHHHHHHHhCCCCCEEEEEhHHhhhhHhhhhhccCCCCCCEEEEEEcCc-cccchHH-HHHHHh-
Confidence 866542111 111100000 0112234689999999987644321 1 11111 289999999 6554442 223332
Q ss_pred cccCCCCcEEEeccCC
Q 001817 441 LPRRPELRLILMSATL 456 (1009)
Q Consensus 441 l~~~~~lkvIlmSATl 456 (1009)
..|+...++||||+
T Consensus 389 --~~p~a~~lGfTaTP 402 (667)
T TIGR00348 389 --ALKNASFFGFTGTP 402 (667)
T ss_pred --hCCCCcEEEEeCCC
Confidence 34677899999999
No 110
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=99.70 E-value=6.2e-17 Score=165.03 Aligned_cols=156 Identities=22% Similarity=0.266 Sum_probs=110.1
Q ss_pred HHHHHHHHHHHcCCeEEEEecCCCchhhhHHHHHHHHHHHHhcCCceEEEechhHHHHHHHHHHHHHHHhCCcccceeee
Q 001817 301 KERDALLKAISENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERGEKLGESVGY 380 (1009)
Q Consensus 301 ~~q~~il~~l~~~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~IvvtqPrR~La~qva~rva~e~~~~~g~~vGy 380 (1009)
..|.++++.+.+++++++.||||||||+++..+++..+.+ +....+++++|+++++.|+.+++...++..-.....+
T Consensus 2 ~~Q~~~~~~i~~~~~~li~aptGsGKT~~~~~~~l~~~~~---~~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~~~ 78 (169)
T PF00270_consen 2 PLQQEAIEAIISGKNVLISAPTGSGKTLAYILPALNRLQE---GKDARVLIIVPTRALAEQQFERLRKFFSNTNVRVVLL 78 (169)
T ss_dssp HHHHHHHHHHHTTSEEEEECSTTSSHHHHHHHHHHHHHHT---TSSSEEEEEESSHHHHHHHHHHHHHHTTTTTSSEEEE
T ss_pred HHHHHHHHHHHcCCCEEEECCCCCccHHHHHHHHHhhhcc---CCCceEEEEeecccccccccccccccccccccccccc
Confidence 4677888888899999999999999999999999887653 2334778888999999999999988776521111111
Q ss_pred ----eee--eccccCCCcEEEEEccHHHHHHHhcCC-CCCCccEEEEeCCCcCCCc--chHHHHHHHHHcccCCCCcEEE
Q 001817 381 ----KVR--LEGMKGRDTRLMFCTTGILLRRLLVDR-SLRGVTHVIVDEIHERGMN--EDFLLIVLKELLPRRPELRLIL 451 (1009)
Q Consensus 381 ----~vr--~e~~~~~~t~Iiv~T~g~Ll~~L~~~~-~l~~is~IIIDEaHeR~~~--~d~ll~llk~ll~~~~~lkvIl 451 (1009)
... .......+++|+|+||+.+++.+.... .+.++++||+||+|+.+.. .+.+..+++. +...++.++|+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~iViDE~h~l~~~~~~~~~~~i~~~-~~~~~~~~~i~ 157 (169)
T PF00270_consen 79 HGGQSISEDQREVLSNQADILVTTPEQLLDLISNGKINISRLSLIVIDEAHHLSDETFRAMLKSILRR-LKRFKNIQIIL 157 (169)
T ss_dssp STTSCHHHHHHHHHHTTSSEEEEEHHHHHHHHHTTSSTGTTESEEEEETHHHHHHTTHHHHHHHHHHH-SHTTTTSEEEE
T ss_pred cccccccccccccccccccccccCcchhhccccccccccccceeeccCcccccccccHHHHHHHHHHH-hcCCCCCcEEE
Confidence 000 001112468999999999999888643 5666999999999974332 1222223333 33334789999
Q ss_pred eccCCCHHHH
Q 001817 452 MSATLNAELF 461 (1009)
Q Consensus 452 mSATl~~~~~ 461 (1009)
||||++ ..+
T Consensus 158 ~SAT~~-~~~ 166 (169)
T PF00270_consen 158 LSATLP-SNV 166 (169)
T ss_dssp EESSST-HHH
T ss_pred EeeCCC-hhH
Confidence 999997 443
No 111
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.70 E-value=6.4e-16 Score=187.02 Aligned_cols=106 Identities=25% Similarity=0.318 Sum_probs=95.2
Q ss_pred CCCcEEEEcCCHhHHHHHHHHHHcCCCCCCCCCeEEEEecCCCCHHHHHhhcCCCCCCceEEEEecCccccccCCC---C
Q 001817 576 RPGAVLVFMTGWDDINSLKDQLQAHPLLGDPSRVLLLACHGSMASSEQRLIFDKPEDGVRKIVLATNMAETSITIN---D 652 (1009)
Q Consensus 576 ~~g~iLVFl~~~~~i~~l~~~L~~~~~~~~~~~~~v~~lHs~l~~~er~~v~~~f~~G~~kVLVATniae~GIdIp---~ 652 (1009)
.+.++||||++....+.+++.|.+. ++....+|+.+...|+..+..++++|. |+||||+|++|+||+ +
T Consensus 439 ~g~pvLI~t~si~~se~ls~~L~~~-------gi~~~~Lna~~~~~Ea~ii~~ag~~g~--VtIATnmAGRGtDI~l~~~ 509 (796)
T PRK12906 439 KGQPVLVGTVAIESSERLSHLLDEA-------GIPHAVLNAKNHAKEAEIIMNAGQRGA--VTIATNMAGRGTDIKLGPG 509 (796)
T ss_pred CCCCEEEEeCcHHHHHHHHHHHHHC-------CCCeeEecCCcHHHHHHHHHhcCCCce--EEEEeccccCCCCCCCCcc
Confidence 5679999999999999999999987 666889999999999999999888887 999999999999994 8
Q ss_pred ee-----EEEeCCCCccccccCCCCCCcccccccCHHhHHhhhcccCCCC-CCcEEEecchh
Q 001817 653 VV-----FVIDCGKAKETSYDALNNTPCLLPSWISKAAARQRRGRAGRVQ-PGECYHLYPRY 708 (1009)
Q Consensus 653 V~-----~VId~g~~k~~~yd~~~~~~~l~~~~iS~as~~QR~GRAGR~~-~G~c~~Lys~~ 708 (1009)
|. +||++.+|. |...+.||+|||||.| ||.+..+++.+
T Consensus 510 V~~~GGLhVI~te~pe------------------s~ri~~Ql~GRtGRqG~~G~s~~~~sle 553 (796)
T PRK12906 510 VKELGGLAVIGTERHE------------------SRRIDNQLRGRSGRQGDPGSSRFYLSLE 553 (796)
T ss_pred hhhhCCcEEEeeecCC------------------cHHHHHHHhhhhccCCCCcceEEEEecc
Confidence 99 999988887 7888999999999996 69998887765
No 112
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=99.69 E-value=1.6e-16 Score=167.54 Aligned_cols=159 Identities=19% Similarity=0.187 Sum_probs=109.6
Q ss_pred CHHHHHHHHHHHHcCCeEEEEecCCCchhhhHHHHHHHHHHHHhcCCceEEEechhHHHHHHHHHHHHHHHhCC---ccc
Q 001817 299 SYKERDALLKAISENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERGE---KLG 375 (1009)
Q Consensus 299 i~~~q~~il~~l~~~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~IvvtqPrR~La~qva~rva~e~~~---~~g 375 (1009)
.+..|.+++..+.+++++++++|||+|||..+.+++++.+.......+++++++.|+++|+.|+++.+...... .+.
T Consensus 22 ~~~~Q~~~~~~~~~~~~~li~~~TG~GKT~~~~~~~l~~~~~~~~~~~~~viii~p~~~L~~q~~~~~~~~~~~~~~~~~ 101 (203)
T cd00268 22 PTPIQARAIPPLLSGRDVIGQAQTGSGKTAAFLIPILEKLDPSPKKDGPQALILAPTRELALQIAEVARKLGKHTNLKVV 101 (203)
T ss_pred CCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHHHHhhcccCCceEEEEcCCHHHHHHHHHHHHHHhccCCceEE
Confidence 45566777777878999999999999999999999998876642234567888889999999999888665432 222
Q ss_pred ceee-eeeeec-cccCCCcEEEEEccHHHHHHHhcCC-CCCCccEEEEeCCCcCCCcchHHHHHHHHHcccCCCCcEEEe
Q 001817 376 ESVG-YKVRLE-GMKGRDTRLMFCTTGILLRRLLVDR-SLRGVTHVIVDEIHERGMNEDFLLIVLKELLPRRPELRLILM 452 (1009)
Q Consensus 376 ~~vG-y~vr~e-~~~~~~t~Iiv~T~g~Ll~~L~~~~-~l~~is~IIIDEaHeR~~~~d~ll~llk~ll~~~~~lkvIlm 452 (1009)
...| ...... .....+++|+||||+.+++.+.+.. .+.+++++|+||+|+.. +..+...+...+....++.++++|
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~l~~lIvDE~h~~~-~~~~~~~~~~~~~~l~~~~~~~~~ 180 (203)
T cd00268 102 VIYGGTSIDKQIRKLKRGPHIVVATPGRLLDLLERGKLDLSKVKYLVLDEADRML-DMGFEDQIREILKLLPKDRQTLLF 180 (203)
T ss_pred EEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCCCChhhCCEEEEeChHHhh-ccChHHHHHHHHHhCCcccEEEEE
Confidence 2222 000000 1112368899999999999887665 68899999999999632 222222221111123347899999
Q ss_pred ccCCCH
Q 001817 453 SATLNA 458 (1009)
Q Consensus 453 SATl~~ 458 (1009)
|||++.
T Consensus 181 SAT~~~ 186 (203)
T cd00268 181 SATMPK 186 (203)
T ss_pred eccCCH
Confidence 999963
No 113
>PF04408 HA2: Helicase associated domain (HA2); InterPro: IPR007502 This presumed domain is about 90 amino acid residues in length. It is found as a diverse set of RNA helicases. Its function is unknown, however it seems likely to be involved in nucleic acid binding.; GO: 0004386 helicase activity; PDB: 3I4U_A 2XAU_B 3KX2_B.
Probab=99.69 E-value=5.2e-17 Score=151.76 Aligned_cols=92 Identities=53% Similarity=0.849 Sum_probs=69.5
Q ss_pred HHHHHHHHhccccCCCCcChhhhhcccCCCChhHHHHHHHhhhhCCcchHHHHHHhhcCCCccccCcChHHHHH--HHHh
Q 001817 759 NAIEYLQIIGALDENENLTVLGRNLSMLPVEPKLGKMLILGAIFNCLDPVMTVVAGLSVRDPFLMPFDKKDLAE--SAKA 836 (1009)
Q Consensus 759 ~al~~L~~lgald~~~~lT~lG~~ls~lpl~p~~~k~ll~~~~~~c~~~~l~i~a~ls~~~~f~~p~~~~~~~~--~~~~ 836 (1009)
+|++.|+.+||||++|+||++|+.|+.||++|++||||+.|+.++|++++++|||+|++.+||..|.++++..+ ..+.
T Consensus 1 ~A~~~L~~Lgald~~~~lT~lG~~~~~lPl~p~~a~~Ll~~~~~~~~~~~~~iaa~ls~~~~f~~~~~~~~~~~~~~~~~ 80 (102)
T PF04408_consen 1 KALELLKSLGALDENGNLTPLGRKMSQLPLDPRLAKMLLYGIQFGCLDEALIIAAILSVRSPFINPDDKEENAEQDNAKK 80 (102)
T ss_dssp -HHHHHHHTTSB-TTS-B-HHHHHHTTSSS-HHHHHHHHHHHHCT-HHHHHHHHHHHTSS--B---CCGHHHHHH--HHH
T ss_pred CHHHHHHHCCCCCCCCCcCHHHHHHHHCCCchHhHhHhhhccccccHHHHHHHHHHHcCCCcccCccHHHHHHHHHHHHH
Confidence 48899999999999999999999999999999999999999999999999999999999999999876554433 2444
Q ss_pred hh--------ccCChhhHHHHH
Q 001817 837 QF--------SARDYSDHLALV 850 (1009)
Q Consensus 837 ~f--------~~~~~sDhl~~l 850 (1009)
+| ..+..|||++++
T Consensus 81 ~~~~~~~~~~~~~~~sDhltlL 102 (102)
T PF04408_consen 81 KFRIKQARKKFSDDESDHLTLL 102 (102)
T ss_dssp TT----------BTTBHHHHHH
T ss_pred HhhhhhcccccCCCCCCHHhcC
Confidence 44 237889999986
No 114
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.68 E-value=3.4e-15 Score=181.51 Aligned_cols=107 Identities=21% Similarity=0.231 Sum_probs=86.5
Q ss_pred cCCCcEEEEcCCHhHHHHHHHHHHcCCCCCCCCCeEEEEecCCCCHHHHHhhcCCCCCCceEEEEecCccccccCCC-C-
Q 001817 575 ERPGAVLVFMTGWDDINSLKDQLQAHPLLGDPSRVLLLACHGSMASSEQRLIFDKPEDGVRKIVLATNMAETSITIN-D- 652 (1009)
Q Consensus 575 ~~~g~iLVFl~~~~~i~~l~~~L~~~~~~~~~~~~~v~~lHs~l~~~er~~v~~~f~~G~~kVLVATniae~GIdIp-~- 652 (1009)
..+.++||||++.+.++.+++.|... ++....+||. +.+|+..+..|+.|...|+||||+|++|+||+ +
T Consensus 428 ~~grpVLIft~Si~~se~Ls~~L~~~-------gi~~~vLnak--q~eREa~Iia~Ag~~g~VtIATNmAGRGtDI~LgG 498 (830)
T PRK12904 428 KKGQPVLVGTVSIEKSELLSKLLKKA-------GIPHNVLNAK--NHEREAEIIAQAGRPGAVTIATNMAGRGTDIKLGG 498 (830)
T ss_pred hcCCCEEEEeCcHHHHHHHHHHHHHC-------CCceEeccCc--hHHHHHHHHHhcCCCceEEEecccccCCcCccCCC
Confidence 34569999999999999999999986 6778889996 77888899999999999999999999999997 2
Q ss_pred ------------------------------------eeEEEeCCCCccccccCCCCCCcccccccCHHhHHhhhcccCCC
Q 001817 653 ------------------------------------VVFVIDCGKAKETSYDALNNTPCLLPSWISKAAARQRRGRAGRV 696 (1009)
Q Consensus 653 ------------------------------------V~~VId~g~~k~~~yd~~~~~~~l~~~~iS~as~~QR~GRAGR~ 696 (1009)
=-+||-+.++. |+--=.|-+|||||.
T Consensus 499 n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~GGLhVigTerhe------------------srRid~QlrGRagRQ 560 (830)
T PRK12904 499 NPEMLAAALLEEETEEQIAKIKAEWQEEHEEVLEAGGLHVIGTERHE------------------SRRIDNQLRGRSGRQ 560 (830)
T ss_pred chhhhhhhhhhhhhhHHHHHHHHHHhhhhhhHHHcCCCEEEecccCc------------------hHHHHHHhhcccccC
Confidence 13455544444 455556999999999
Q ss_pred C-CCcEEEecchh
Q 001817 697 Q-PGECYHLYPRY 708 (1009)
Q Consensus 697 ~-~G~c~~Lys~~ 708 (1009)
| ||.+-.+.|-+
T Consensus 561 GdpGss~f~lSle 573 (830)
T PRK12904 561 GDPGSSRFYLSLE 573 (830)
T ss_pred CCCCceeEEEEcC
Confidence 6 68876665543
No 115
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=99.62 E-value=3.4e-14 Score=170.07 Aligned_cols=290 Identities=21% Similarity=0.234 Sum_probs=186.9
Q ss_pred HHhcChhhHHHHHhhcCCCCHHHHHHHHHHHHcCCeEEEEecCCCchhhhHHHHHHHHHHHHhcCCceEEEechhHHHHH
Q 001817 280 AWQESPEGQKMLEFRRSLPSYKERDALLKAISENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISA 359 (1009)
Q Consensus 280 ~~~~~~~~~~l~~~r~~LPi~~~q~~il~~l~~~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~IvvtqPrR~La 359 (1009)
.|..-..+.+.++.-...+.|..|..+..-+..|+..-|.||||.||||....+.+-. ..+|..+.+++ ||+.|+
T Consensus 64 ~~~e~e~~~~fF~k~~G~~~ws~QR~WakR~~rg~SFaiiAPTGvGKTTfg~~~sl~~---a~kgkr~yii~--PT~~Lv 138 (1187)
T COG1110 64 YLWEYEEFEEFFKKATGFRPWSAQRVWAKRLVRGKSFAIIAPTGVGKTTFGLLMSLYL---AKKGKRVYIIV--PTTTLV 138 (1187)
T ss_pred HHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCCceEEEcCCCCchhHHHHHHHHHH---HhcCCeEEEEe--cCHHHH
Confidence 3444455556666666779999999999999999999999999999998766554432 23444444444 999999
Q ss_pred HHHHHHHHHHhCC--cccceeeeeeee---------ccccCCCcEEEEEccHHHHHHHhcCCCCCCccEEEEeCCCc---
Q 001817 360 MAVSERVAAERGE--KLGESVGYKVRL---------EGMKGRDTRLMFCTTGILLRRLLVDRSLRGVTHVIVDEIHE--- 425 (1009)
Q Consensus 360 ~qva~rva~e~~~--~~g~~vGy~vr~---------e~~~~~~t~Iiv~T~g~Ll~~L~~~~~l~~is~IIIDEaHe--- 425 (1009)
.|+++++.+..-. .....++|.... +...+.+.+|+|+|.+.|...+..-.. -++++|++|++|.
T Consensus 139 ~Q~~~kl~~~~e~~~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~FL~k~~e~L~~-~kFdfifVDDVDA~Lk 217 (1187)
T COG1110 139 RQVYERLKKFAEDAGSLDVLVVYHSALPTKEKEEALERIESGDFDILITTSQFLSKRFEELSK-LKFDFIFVDDVDAILK 217 (1187)
T ss_pred HHHHHHHHHHHhhcCCcceeeeeccccchHHHHHHHHHHhcCCccEEEEeHHHHHhhHHHhcc-cCCCEEEEccHHHHHh
Confidence 9999999765411 122222243322 223346789999999988765542222 3789999999993
Q ss_pred CCCcchHHHHHH----------------HHHc----------------------ccCCCCcEEEeccCCCH-----HHHH
Q 001817 426 RGMNEDFLLIVL----------------KELL----------------------PRRPELRLILMSATLNA-----ELFS 462 (1009)
Q Consensus 426 R~~~~d~ll~ll----------------k~ll----------------------~~~~~lkvIlmSATl~~-----~~~~ 462 (1009)
.+-+.|-++.++ +.-+ .+...-.+|++|||..+ ..|.
T Consensus 218 askNvDriL~LlGf~eE~i~~a~~~~~lr~~~~~~~~~~~~~e~~~~~e~~~~~~r~k~g~LvvsSATg~~rg~R~~LfR 297 (1187)
T COG1110 218 ASKNVDRLLRLLGFSEEVIESAYELIKLRRKLYGEKRAERVREELREVEREREKKRRKLGILVVSSATGKPRGSRLKLFR 297 (1187)
T ss_pred ccccHHHHHHHcCCCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhccCCceEEEeeccCCCCCchHHHHH
Confidence 233333222211 1111 11233568999999843 2344
Q ss_pred hhhCCCCeeccCCcccceeeEehhhHHHHhhhccCcccccccchhhhHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhcc
Q 001817 463 SYFGGAPMLHIPGFTYPVRAYFLENILEMTRYRLNTYNQIDDYGQEKSWKMQKQALALRKRKSSIASAVEDALEAADFRE 542 (1009)
Q Consensus 463 ~yf~~~pvi~i~g~~~pv~~~yl~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~ 542 (1009)
+.+|=.+-.... ++. +.+|.|...
T Consensus 298 eLlgFevG~~~~---------~LR-------------NIvD~y~~~---------------------------------- 321 (1187)
T COG1110 298 ELLGFEVGSGGE---------GLR-------------NIVDIYVES---------------------------------- 321 (1187)
T ss_pred HHhCCccCccch---------hhh-------------heeeeeccC----------------------------------
Confidence 444311100000 010 001111000
Q ss_pred hhhhhhhccccCCCCCcchhhHHHHHHHHHhhcCCCcEEEEcCC---HhHHHHHHHHHHcCCCCCCCCCeEEEEecCCCC
Q 001817 543 YSVQTQQSLSCWNPDSIGFNLIEHVLCHIVKKERPGAVLVFMTG---WDDINSLKDQLQAHPLLGDPSRVLLLACHGSMA 619 (1009)
Q Consensus 543 ~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~---~~~i~~l~~~L~~~~~~~~~~~~~v~~lHs~l~ 619 (1009)
+.+ ..+..+++.... ..|||++. ++.++++++.|+.+ ++.+...|+.
T Consensus 322 -------------------~~~-e~~~elvk~lG~-GgLIfV~~d~G~e~aeel~e~Lr~~-------Gi~a~~~~a~-- 371 (1187)
T COG1110 322 -------------------ESL-EKVVELVKKLGD-GGLIFVPIDYGREKAEELAEYLRSH-------GINAELIHAE-- 371 (1187)
T ss_pred -------------------ccH-HHHHHHHHHhCC-CeEEEEEcHHhHHHHHHHHHHHHhc-------CceEEEeecc--
Confidence 000 112233343333 48999999 89999999999987 7888888873
Q ss_pred HHHHHhhcCCCCCCceEEEEec----CccccccCCC-CeeEEEeCCCCcc
Q 001817 620 SSEQRLIFDKPEDGVRKIVLAT----NMAETSITIN-DVVFVIDCGKAKE 664 (1009)
Q Consensus 620 ~~er~~v~~~f~~G~~kVLVAT----niae~GIdIp-~V~~VId~g~~k~ 664 (1009)
.++.++.|..|++.|+|.. +++-+|||+| -++|+|-.|.||.
T Consensus 372 ---~~~~le~F~~GeidvLVGvAsyYG~lVRGlDLP~rirYaIF~GvPk~ 418 (1187)
T COG1110 372 ---KEEALEDFEEGEVDVLVGVASYYGVLVRGLDLPHRIRYAVFYGVPKF 418 (1187)
T ss_pred ---chhhhhhhccCceeEEEEecccccceeecCCchhheeEEEEecCCce
Confidence 3678899999999999865 7899999999 5699999999964
No 116
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.60 E-value=2.8e-14 Score=173.10 Aligned_cols=106 Identities=21% Similarity=0.265 Sum_probs=86.6
Q ss_pred CCCcEEEEcCCHhHHHHHHHHHHcCCCCCCCCCeEEEEecCCCCHHHHHhhcCCCCCCceEEEEecCccccccCCC-C--
Q 001817 576 RPGAVLVFMTGWDDINSLKDQLQAHPLLGDPSRVLLLACHGSMASSEQRLIFDKPEDGVRKIVLATNMAETSITIN-D-- 652 (1009)
Q Consensus 576 ~~g~iLVFl~~~~~i~~l~~~L~~~~~~~~~~~~~v~~lHs~l~~~er~~v~~~f~~G~~kVLVATniae~GIdIp-~-- 652 (1009)
.+.++||||.+.+..+.++.+|... ++....+|+.++..|+..+.++|++|. |+||||+|++|+||- +
T Consensus 448 ~GrpVLV~t~sv~~se~ls~~L~~~-------gi~~~vLnak~~~~Ea~ii~~Ag~~G~--VtIATnmAGRGTDIkLggn 518 (908)
T PRK13107 448 RGQPVLVGTVSIEQSELLARLMVKE-------KIPHEVLNAKFHEREAEIVAQAGRTGA--VTIATNMAGRGTDIVLGGN 518 (908)
T ss_pred cCCCEEEEeCcHHHHHHHHHHHHHC-------CCCeEeccCcccHHHHHHHHhCCCCCc--EEEecCCcCCCcceecCCc
Confidence 4569999999999999999999987 677889999999999999999999998 999999999999986 1
Q ss_pred ----------------------------------eeEEEeCCCCccccccCCCCCCcccccccCHHhHHhhhcccCCCC-
Q 001817 653 ----------------------------------VVFVIDCGKAKETSYDALNNTPCLLPSWISKAAARQRRGRAGRVQ- 697 (1009)
Q Consensus 653 ----------------------------------V~~VId~g~~k~~~yd~~~~~~~l~~~~iS~as~~QR~GRAGR~~- 697 (1009)
=-+||-+.++. |+--=.|-+|||||.|
T Consensus 519 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTerhe------------------SrRID~QLrGRaGRQGD 580 (908)
T PRK13107 519 WNMEIEALENPTAEQKAKIKADWQIRHDEVVAAGGLHILGTERHE------------------SRRIDNQLRGRAGRQGD 580 (908)
T ss_pred hHHhhhhhcchhhHHHHHHHHHHHhhHHHHHHcCCCEEEecccCc------------------hHHHHhhhhcccccCCC
Confidence 13566555544 3344459999999996
Q ss_pred CCcEEEecchh
Q 001817 698 PGECYHLYPRY 708 (1009)
Q Consensus 698 ~G~c~~Lys~~ 708 (1009)
||.+-.+.|-+
T Consensus 581 PGss~f~lSlE 591 (908)
T PRK13107 581 AGSSRFYLSME 591 (908)
T ss_pred CCceeEEEEeC
Confidence 68876665543
No 117
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=99.59 E-value=6.2e-14 Score=170.29 Aligned_cols=125 Identities=18% Similarity=0.137 Sum_probs=90.3
Q ss_pred cCCC--CHHHHHHHHHHHHcCCeEEEEecCCCchhhhHHHHHHHHHHHHhcCCceEEEechhHHHHHHHHHHHHHHHhCC
Q 001817 295 RSLP--SYKERDALLKAISENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERGE 372 (1009)
Q Consensus 295 ~~LP--i~~~q~~il~~l~~~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~IvvtqPrR~La~qva~rva~e~~~ 372 (1009)
...| ...++.+++..+..++.+|+.++||+|||+++.++++..++. +.. +++++|+++||.|+++.+.... .
T Consensus 87 ~~~p~~~tp~qvQ~I~~i~l~~gvIAeaqTGeGKTLAf~LP~l~~aL~---g~~--v~IVTpTrELA~Qdae~m~~L~-k 160 (970)
T PRK12899 87 YHQQWDMVPYDVQILGAIAMHKGFITEMQTGEGKTLTAVMPLYLNALT---GKP--VHLVTVNDYLAQRDCEWVGSVL-R 160 (970)
T ss_pred ccCCCCCChHHHHHhhhhhcCCCeEEEeCCCCChHHHHHHHHHHHHhh---cCC--eEEEeCCHHHHHHHHHHHHHHH-h
Confidence 3456 667778888889899999999999999999999999987753 222 4455699999999998776543 2
Q ss_pred cccceeeeeeeec----cccCCCcEEEEEccHHH-HHHHhcCC-CC-------CCccEEEEeCCCc
Q 001817 373 KLGESVGYKVRLE----GMKGRDTRLMFCTTGIL-LRRLLVDR-SL-------RGVTHVIVDEIHE 425 (1009)
Q Consensus 373 ~~g~~vGy~vr~e----~~~~~~t~Iiv~T~g~L-l~~L~~~~-~l-------~~is~IIIDEaHe 425 (1009)
.+|..+|.-+... ....-.++|+|+|||.| ++.+.... .+ ..+.++|||||+.
T Consensus 161 ~lGLsV~~i~GG~~~~eq~~~y~~DIVygTPgRLgfDyLrd~~~~~~~~~~vqr~~~~~IIDEADs 226 (970)
T PRK12899 161 WLGLTTGVLVSGSPLEKRKEIYQCDVVYGTASEFGFDYLRDNSIATRKEEQVGRGFYFAIIDEVDS 226 (970)
T ss_pred hcCCeEEEEeCCCCHHHHHHHcCCCEEEECCChhHHHHhhCCCCCcCHHHhhcccccEEEEechhh
Confidence 2344444322111 11112589999999999 88887653 23 3568999999993
No 118
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=99.56 E-value=6.7e-14 Score=157.82 Aligned_cols=276 Identities=20% Similarity=0.232 Sum_probs=175.3
Q ss_pred cCCeEEEEecCCCchhhhHHHHHHHHHHHHhcCCceEEEechhHHHHHHHHHHHHHHHhCCcccceeeeeeeeccccCCC
Q 001817 312 ENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERGEKLGESVGYKVRLEGMKGRD 391 (1009)
Q Consensus 312 ~~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~IvvtqPrR~La~qva~rva~e~~~~~g~~vGy~vr~e~~~~~~ 391 (1009)
..+.++-+|||.||||.-+++-+.+ ... -++.-|.|.||.++++++ ...|..+....|-..++.......
T Consensus 190 ~RkIi~H~GPTNSGKTy~ALqrl~~----aks-----GvycGPLrLLA~EV~~r~-na~gipCdL~TGeE~~~~~~~~~~ 259 (700)
T KOG0953|consen 190 RRKIIMHVGPTNSGKTYRALQRLKS----AKS-----GVYCGPLRLLAHEVYDRL-NALGIPCDLLTGEERRFVLDNGNP 259 (700)
T ss_pred hheEEEEeCCCCCchhHHHHHHHhh----hcc-----ceecchHHHHHHHHHHHh-hhcCCCccccccceeeecCCCCCc
Confidence 4567888999999999888776543 222 233349999999999999 456777777777666555444455
Q ss_pred cEEEEEccHHHHHHHhcCCCCCCccEEEEeCCCc-----CCCc-chHHHHHHHHHcccCCCCcEEEeccCCCHHHHHhhh
Q 001817 392 TRLMFCTTGILLRRLLVDRSLRGVTHVIVDEIHE-----RGMN-EDFLLIVLKELLPRRPELRLILMSATLNAELFSSYF 465 (1009)
Q Consensus 392 t~Iiv~T~g~Ll~~L~~~~~l~~is~IIIDEaHe-----R~~~-~d~ll~llk~ll~~~~~lkvIlmSATl~~~~~~~yf 465 (1009)
++.+-||-+|.- .-..+++.||||++. ||+. +.-++++..+-+..+.+. |-+
T Consensus 260 a~hvScTVEM~s-------v~~~yeVAViDEIQmm~Dp~RGwAWTrALLGl~AdEiHLCGep------svl--------- 317 (700)
T KOG0953|consen 260 AQHVSCTVEMVS-------VNTPYEVAVIDEIQMMRDPSRGWAWTRALLGLAADEIHLCGEP------SVL--------- 317 (700)
T ss_pred ccceEEEEEEee-------cCCceEEEEehhHHhhcCcccchHHHHHHHhhhhhhhhccCCc------hHH---------
Confidence 778889988752 345689999999993 3322 223333333322222110 000
Q ss_pred CCCCeeccCCcccceeeEehhhHHHHhhhccCcccccccchhhhHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhcchhh
Q 001817 466 GGAPMLHIPGFTYPVRAYFLENILEMTRYRLNTYNQIDDYGQEKSWKMQKQALALRKRKSSIASAVEDALEAADFREYSV 545 (1009)
Q Consensus 466 ~~~pvi~i~g~~~pv~~~yl~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~ 545 (1009)
....+++.+++..... ..|
T Consensus 318 -----------------dlV~~i~k~TGd~vev----~~Y---------------------------------------- 336 (700)
T KOG0953|consen 318 -----------------DLVRKILKMTGDDVEV----REY---------------------------------------- 336 (700)
T ss_pred -----------------HHHHHHHhhcCCeeEE----Eee----------------------------------------
Confidence 0111222222211110 000
Q ss_pred hhhhccccCCCCCcchhhHHHHHHHHHhhcCCCcEEEEcCCHhHHHHHHHHHHcCCCCCCCCCeEEEEecCCCCHHHHHh
Q 001817 546 QTQQSLSCWNPDSIGFNLIEHVLCHIVKKERPGAVLVFMTGWDDINSLKDQLQAHPLLGDPSRVLLLACHGSMASSEQRL 625 (1009)
Q Consensus 546 ~~~~~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~~~~i~~l~~~L~~~~~~~~~~~~~v~~lHs~l~~~er~~ 625 (1009)
+ .++|-. +.+.+..-+++-.+|.++| +.++++|-.+...+++.. +..+..++|+||++.|..
T Consensus 337 ---e---Rl~pL~-----v~~~~~~sl~nlk~GDCvV-~FSkk~I~~~k~kIE~~g------~~k~aVIYGsLPPeTr~a 398 (700)
T KOG0953|consen 337 ---E---RLSPLV-----VEETALGSLSNLKPGDCVV-AFSKKDIFTVKKKIEKAG------NHKCAVIYGSLPPETRLA 398 (700)
T ss_pred ---c---ccCcce-----ehhhhhhhhccCCCCCeEE-EeehhhHHHHHHHHHHhc------CcceEEEecCCCCchhHH
Confidence 0 000000 0011222234456788877 446788999999998862 344888999999987766
Q ss_pred hcCCCC--CCceEEEEecCccccccCCCCeeEEEeCCCCccccccCCCCCCcccccccCHHhHHhhhcccCCCCC----C
Q 001817 626 IFDKPE--DGVRKIVLATNMAETSITINDVVFVIDCGKAKETSYDALNNTPCLLPSWISKAAARQRRGRAGRVQP----G 699 (1009)
Q Consensus 626 v~~~f~--~G~~kVLVATniae~GIdIp~V~~VId~g~~k~~~yd~~~~~~~l~~~~iS~as~~QR~GRAGR~~~----G 699 (1009)
--..|. ++..+|+|||+...+|+|+ +|+-||-+.+.| |+ .-.+..|+.++..|.+|||||.+. |
T Consensus 399 QA~~FNd~~~e~dvlVAsDAIGMGLNL-~IrRiiF~sl~K---ys------g~e~~~it~sqikQIAGRAGRf~s~~~~G 468 (700)
T KOG0953|consen 399 QAALFNDPSNECDVLVASDAIGMGLNL-NIRRIIFYSLIK---YS------GRETEDITVSQIKQIAGRAGRFGSKYPQG 468 (700)
T ss_pred HHHHhCCCCCccceEEeeccccccccc-ceeEEEEeeccc---CC------cccceeccHHHHHHHhhcccccccCCcCc
Confidence 545554 4899999999999999999 688888777766 44 233467899999999999999963 7
Q ss_pred cEEEecchh
Q 001817 700 ECYHLYPRY 708 (1009)
Q Consensus 700 ~c~~Lys~~ 708 (1009)
.+-.|+.++
T Consensus 469 ~vTtl~~eD 477 (700)
T KOG0953|consen 469 EVTTLHSED 477 (700)
T ss_pred eEEEeeHhh
Confidence 777777664
No 119
>smart00847 HA2 Helicase associated domain (HA2) Add an annotation. This presumed domain is about 90 amino acid residues in length. It is found is a diverse set of RNA helicases. Its function is unknown, however it seems likely to be involved in nucleic acid binding.
Probab=99.56 E-value=6e-15 Score=135.31 Aligned_cols=91 Identities=45% Similarity=0.770 Sum_probs=80.5
Q ss_pred HHHHHHHHhccccCCCCcChhhhhcccCCCChhHHHHHHHhhhh-CCcchHHHHHHhhcCCCccccCcChHHHHHHHHhh
Q 001817 759 NAIEYLQIIGALDENENLTVLGRNLSMLPVEPKLGKMLILGAIF-NCLDPVMTVVAGLSVRDPFLMPFDKKDLAESAKAQ 837 (1009)
Q Consensus 759 ~al~~L~~lgald~~~~lT~lG~~ls~lpl~p~~~k~ll~~~~~-~c~~~~l~i~a~ls~~~~f~~p~~~~~~~~~~~~~ 837 (1009)
.|++.|..+||||.+|+||++|+.|+.||++|++||||+.|+.+ +|.+++++|+|++++.++|..+ +.+..+...+..
T Consensus 1 ~A~~~L~~LgAld~~~~lT~lG~~m~~lPl~Prla~~Ll~a~~~~~c~~~~~~i~a~ls~~~~~~~~-~~~~~~~~~~~~ 79 (92)
T smart00847 1 AALELLYELGALDDDGRLTPLGRKMAELPLDPRLAKMLLAAAELFGCLDEILTIAAMLSVGDPFPRP-EKRAEADAARRR 79 (92)
T ss_pred CHHHHHHHCCCcCCCCCcCHHHHHHHHCCCChHHHHHHHHHHhhcCcHHHHHHHHHHhcCCCCcCCc-hHHHHHHHHHHH
Confidence 37899999999999999999999999999999999999999999 9999999999999999998776 455666777888
Q ss_pred hccCChhhHHHHH
Q 001817 838 FSARDYSDHLALV 850 (1009)
Q Consensus 838 f~~~~~sDhl~~l 850 (1009)
|.....|||++++
T Consensus 80 ~~~~~~~D~~~~l 92 (92)
T smart00847 80 FASGRESDHLTLL 92 (92)
T ss_pred ccCCCCCChhhhC
Confidence 8743279999863
No 120
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=99.54 E-value=9.5e-14 Score=167.64 Aligned_cols=355 Identities=19% Similarity=0.232 Sum_probs=194.7
Q ss_pred CCHHHHHHHHHHHHcC----CeEEEEecCCCchhhhHHHHHHHHHHHHhcCCceEEEechhHHHHHHHHHHHHHHHhCCc
Q 001817 298 PSYKERDALLKAISEN----QVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERGEK 373 (1009)
Q Consensus 298 Pi~~~q~~il~~l~~~----~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~IvvtqPrR~La~qva~rva~e~~~~ 373 (1009)
.....|+.+.+.|... ...++.|-||||||-++.+.|.+.+. .| ..+++++|-..|..|+.+|+...+|.+
T Consensus 198 ~Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEvYl~~i~~~L~---~G--kqvLvLVPEI~Ltpq~~~rf~~rFg~~ 272 (730)
T COG1198 198 ALNQEQQAAVEAILSSLGGFAPFLLDGVTGSGKTEVYLEAIAKVLA---QG--KQVLVLVPEIALTPQLLARFKARFGAK 272 (730)
T ss_pred ccCHHHHHHHHHHHHhcccccceeEeCCCCCcHHHHHHHHHHHHHH---cC--CEEEEEeccccchHHHHHHHHHHhCCC
Confidence 3445556666666544 78999999999999999888876552 33 355666699999999999999999977
Q ss_pred ccceee---eeee---eccccCCCcEEEEEccHHHHHHHhcCCCCCCccEEEEeCCCcCCCcchH----HHHHHHHHccc
Q 001817 374 LGESVG---YKVR---LEGMKGRDTRLMFCTTGILLRRLLVDRSLRGVTHVIVDEIHERGMNEDF----LLIVLKELLPR 443 (1009)
Q Consensus 374 ~g~~vG---y~vr---~e~~~~~~t~Iiv~T~g~Ll~~L~~~~~l~~is~IIIDEaHeR~~~~d~----ll~llk~ll~~ 443 (1009)
++.... -..+ +....+...+|+++|--.+.- .++++++|||||-|+-+.-.+- -..-+..+...
T Consensus 273 v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGtRSAlF~------Pf~~LGLIIvDEEHD~sYKq~~~prYhARdvA~~Ra~ 346 (730)
T COG1198 273 VAVLHSGLSPGERYRVWRRARRGEARVVIGTRSALFL------PFKNLGLIIVDEEHDSSYKQEDGPRYHARDVAVLRAK 346 (730)
T ss_pred hhhhcccCChHHHHHHHHHHhcCCceEEEEechhhcC------chhhccEEEEeccccccccCCcCCCcCHHHHHHHHHH
Confidence 655332 1111 122234678999999766542 6889999999999963322210 00011122223
Q ss_pred CCCCcEEEeccCCCHHHHHhhhCC-CCeeccCCccc---ceeeEehhhHHHHhhhccCcccccccchhhhHHHHHHHHHH
Q 001817 444 RPELRLILMSATLNAELFSSYFGG-APMLHIPGFTY---PVRAYFLENILEMTRYRLNTYNQIDDYGQEKSWKMQKQALA 519 (1009)
Q Consensus 444 ~~~lkvIlmSATl~~~~~~~yf~~-~pvi~i~g~~~---pv~~~yl~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 519 (1009)
..++.+|+-|||+..|.+.+-..+ ...+....|.. +-++..++. .++.... +.
T Consensus 347 ~~~~pvvLgSATPSLES~~~~~~g~y~~~~L~~R~~~a~~p~v~iiDm----r~e~~~~-------~~------------ 403 (730)
T COG1198 347 KENAPVVLGSATPSLESYANAESGKYKLLRLTNRAGRARLPRVEIIDM----RKEPLET-------GR------------ 403 (730)
T ss_pred HhCCCEEEecCCCCHHHHHhhhcCceEEEEccccccccCCCcceEEec----ccccccc-------Cc------------
Confidence 346779999999988876665443 12233333322 222222111 0000000 00
Q ss_pred HHhhhhhHHHHHHHHHHHhhhcc-hhhhhhhccccCC------CCCcchhh-------HHHHHHHHHhhcC---------
Q 001817 520 LRKRKSSIASAVEDALEAADFRE-YSVQTQQSLSCWN------PDSIGFNL-------IEHVLCHIVKKER--------- 576 (1009)
Q Consensus 520 ~~~~~~~~~~~v~~~l~~~~~~~-~~~~~~~~l~~~~------~~~i~~~l-------i~~ll~~i~~~~~--------- 576 (1009)
.-...+.+.+++.+......- +-.....+-...+ ..+-+++. ...+.+|.|....
T Consensus 404 --~lS~~Ll~~i~~~l~~geQ~llflnRRGys~~l~C~~Cg~v~~Cp~Cd~~lt~H~~~~~L~CH~Cg~~~~~p~~Cp~C 481 (730)
T COG1198 404 --SLSPALLEAIRKTLERGEQVLLFLNRRGYAPLLLCRDCGYIAECPNCDSPLTLHKATGQLRCHYCGYQEPIPQSCPEC 481 (730)
T ss_pred --cCCHHHHHHHHHHHhcCCeEEEEEccCCccceeecccCCCcccCCCCCcceEEecCCCeeEeCCCCCCCCCCCCCCCC
Confidence 000112223333332211000 0000000100011 11111110 1133444443321
Q ss_pred CCcEEE-EcCCHhHHHHHHHHHHcCCCCCCCCCeEEEEecCCCCHHH--HHhhcCCCCCCceEEEEecCccccccCCCCe
Q 001817 577 PGAVLV-FMTGWDDINSLKDQLQAHPLLGDPSRVLLLACHGSMASSE--QRLIFDKPEDGVRKIVLATNMAETSITINDV 653 (1009)
Q Consensus 577 ~g~iLV-Fl~~~~~i~~l~~~L~~~~~~~~~~~~~v~~lHs~l~~~e--r~~v~~~f~~G~~kVLVATniae~GIdIp~V 653 (1009)
++..|+ |-+|. +++.+.|... + ++..+.-+.++.+... -+..+..|.+|+..|||.|.+++.|.|+|++
T Consensus 482 gs~~L~~~G~Gt---erieeeL~~~--F---P~~rv~r~d~Dtt~~k~~~~~~l~~~~~ge~dILiGTQmiaKG~~fp~v 553 (730)
T COG1198 482 GSEHLRAVGPGT---ERIEEELKRL--F---PGARIIRIDSDTTRRKGALEDLLDQFANGEADILIGTQMIAKGHDFPNV 553 (730)
T ss_pred CCCeeEEecccH---HHHHHHHHHH--C---CCCcEEEEccccccchhhHHHHHHHHhCCCCCeeecchhhhcCCCcccc
Confidence 123343 34443 4445555543 1 2445667777665433 3467889999999999999999999999999
Q ss_pred eEE--EeCCCCccccccCCCCCCcccccccCHHhHHhhhcccCCC-CCCcEEEe
Q 001817 654 VFV--IDCGKAKETSYDALNNTPCLLPSWISKAAARQRRGRAGRV-QPGECYHL 704 (1009)
Q Consensus 654 ~~V--Id~g~~k~~~yd~~~~~~~l~~~~iS~as~~QR~GRAGR~-~~G~c~~L 704 (1009)
+.| +|. |..-+.+.+....=.-.-+.|-+|||||. .+|.++.-
T Consensus 554 tLVgvl~a--------D~~L~~~DfRA~Er~fqll~QvaGRAgR~~~~G~VvIQ 599 (730)
T COG1198 554 TLVGVLDA--------DTGLGSPDFRASERTFQLLMQVAGRAGRAGKPGEVVIQ 599 (730)
T ss_pred eEEEEEec--------hhhhcCCCcchHHHHHHHHHHHHhhhccCCCCCeEEEE
Confidence 665 453 23333334432222344577999999999 78887653
No 121
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=99.53 E-value=1.5e-12 Score=163.37 Aligned_cols=110 Identities=19% Similarity=0.213 Sum_probs=90.2
Q ss_pred CCCcEEEEcCCHhHHHHHHHHHHcCCCCCCCCCeEEEEecCCCCHHHHHhhcCCCCC---CceEEEEecCccccccCCCC
Q 001817 576 RPGAVLVFMTGWDDINSLKDQLQAHPLLGDPSRVLLLACHGSMASSEQRLIFDKPED---GVRKIVLATNMAETSITIND 652 (1009)
Q Consensus 576 ~~g~iLVFl~~~~~i~~l~~~L~~~~~~~~~~~~~v~~lHs~l~~~er~~v~~~f~~---G~~kVLVATniae~GIdIp~ 652 (1009)
.+.++|||+.-......+.+.|... ++....+||+++.++|+.+++.|.. +..-+|+||.++..|||+..
T Consensus 486 ~g~KVLIFSQft~~LdiLed~L~~~-------g~~y~rIdGsts~~eRq~~Id~Fn~~~s~~~VfLLSTrAGGlGINLt~ 558 (1033)
T PLN03142 486 RDSRVLIFSQMTRLLDILEDYLMYR-------GYQYCRIDGNTGGEDRDASIDAFNKPGSEKFVFLLSTRAGGLGINLAT 558 (1033)
T ss_pred cCCeEEeehhHHHHHHHHHHHHHHc-------CCcEEEECCCCCHHHHHHHHHHhccccCCceEEEEeccccccCCchhh
Confidence 4569999999888888888888765 5668889999999999999999964 34567899999999999999
Q ss_pred eeEEEeCCCCccccccCCCCCCcccccccCHHhHHhhhcccCCCCC---CcEEEecchhhh
Q 001817 653 VVFVIDCGKAKETSYDALNNTPCLLPSWISKAAARQRRGRAGRVQP---GECYHLYPRYVY 710 (1009)
Q Consensus 653 V~~VId~g~~k~~~yd~~~~~~~l~~~~iS~as~~QR~GRAGR~~~---G~c~~Lys~~~~ 710 (1009)
+++||. ||+.. +++...|+.|||-|.|. =.+|+|++....
T Consensus 559 Ad~VIi--------yD~dW----------NP~~d~QAidRaHRIGQkk~V~VyRLIt~gTI 601 (1033)
T PLN03142 559 ADIVIL--------YDSDW----------NPQVDLQAQDRAHRIGQKKEVQVFRFCTEYTI 601 (1033)
T ss_pred CCEEEE--------eCCCC----------ChHHHHHHHHHhhhcCCCceEEEEEEEeCCcH
Confidence 999999 44433 55667799999999975 357888887654
No 122
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=99.51 E-value=1.5e-12 Score=165.03 Aligned_cols=139 Identities=17% Similarity=0.166 Sum_probs=90.0
Q ss_pred HHHHHHHhhcCCCcEEEEcCCHhHHHHHHHHHHcCCCCCCCCCeEEEEecCCCCHHHHHhhcCCCCCCceEEEEecCccc
Q 001817 566 HVLCHIVKKERPGAVLVFMTGWDDINSLKDQLQAHPLLGDPSRVLLLACHGSMASSEQRLIFDKPEDGVRKIVLATNMAE 645 (1009)
Q Consensus 566 ~ll~~i~~~~~~g~iLVFl~~~~~i~~l~~~L~~~~~~~~~~~~~v~~lHs~l~~~er~~v~~~f~~G~~kVLVATniae 645 (1009)
..+..++.. .+|++|||+++.+..+.+++.|...... .++.+.. .+.. .+|..+++.|+.|+..||++|+.+.
T Consensus 664 ~~i~~l~~~-~~g~~LVlftS~~~l~~v~~~L~~~~~~---~~~~~l~--q~~~-~~r~~ll~~F~~~~~~iLlgt~sf~ 736 (850)
T TIGR01407 664 SYIIEITAI-TSPKILVLFTSYEMLHMVYDMLNELPEF---EGYEVLA--QGIN-GSRAKIKKRFNNGEKAILLGTSSFW 736 (850)
T ss_pred HHHHHHHHh-cCCCEEEEeCCHHHHHHHHHHHhhhccc---cCceEEe--cCCC-ccHHHHHHHHHhCCCeEEEEcceee
Confidence 334444443 4589999999999999999999753111 1233322 2332 4678889999999999999999999
Q ss_pred cccCCCCe--eEEEeCCCCccccccCC----------CCCCcccc--cccCHHhHHhhhcccCCCCC--CcEEEe---cc
Q 001817 646 TSITINDV--VFVIDCGKAKETSYDAL----------NNTPCLLP--SWISKAAARQRRGRAGRVQP--GECYHL---YP 706 (1009)
Q Consensus 646 ~GIdIp~V--~~VId~g~~k~~~yd~~----------~~~~~l~~--~~iS~as~~QR~GRAGR~~~--G~c~~L---ys 706 (1009)
+|||+|+. +.||-.|+|-..--|+. .+-..+.. .+-....+.|-+||.=|... |..+.| +.
T Consensus 737 EGVD~~g~~l~~viI~~LPf~~p~dp~~~a~~~~~~~~g~~~f~~~~lP~A~~~l~Qa~GRlIRs~~D~G~v~ilD~R~~ 816 (850)
T TIGR01407 737 EGVDFPGNGLVCLVIPRLPFANPKHPLTKKYWQKLEQEGKNPFYDYVLPMAIIRLRQALGRLIRRENDRGSIVILDRRLV 816 (850)
T ss_pred cccccCCCceEEEEEeCCCCCCCCCHHHHHHHHHHHHhcCCchHHhhHHHHHHHHHHhhccccccCCceEEEEEEccccc
Confidence 99999966 57788899853211110 01111111 11233457899999999854 766665 33
Q ss_pred hhhhh
Q 001817 707 RYVYD 711 (1009)
Q Consensus 707 ~~~~~ 711 (1009)
...|.
T Consensus 817 ~~~Yg 821 (850)
T TIGR01407 817 GKRYG 821 (850)
T ss_pred cchHH
Confidence 44453
No 123
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.44 E-value=1e-12 Score=128.02 Aligned_cols=137 Identities=32% Similarity=0.349 Sum_probs=94.9
Q ss_pred CeEEEEecCCCchhhhHHHHHHHHHHHHhcCCceEEEechhHHHHHHHHHHHHHHHhCCcccceeeeeeeecccc-----
Q 001817 314 QVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERGEKLGESVGYKVRLEGMK----- 388 (1009)
Q Consensus 314 ~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~IvvtqPrR~La~qva~rva~e~~~~~g~~vGy~vr~e~~~----- 388 (1009)
+++++.||||+|||+++..++.+.... +...++++++|++.++.|..+.+...... +..+.+........
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~~~~---~~~~~~lv~~p~~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 75 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILELLDS---LKGGQVLVLAPTRELANQVAERLKELFGE--GIKVGYLIGGTSIKQQEKL 75 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHHHhc---ccCCCEEEEcCcHHHHHHHHHHHHHHhhC--CcEEEEEecCcchhHHHHH
Confidence 468999999999999998888775533 23457777789999999999988877653 23333333222222
Q ss_pred -CCCcEEEEEccHHHHHHHhcCC-CCCCccEEEEeCCCcCCCcchHHHHHHHHHcccCCCCcEEEeccCC
Q 001817 389 -GRDTRLMFCTTGILLRRLLVDR-SLRGVTHVIVDEIHERGMNEDFLLIVLKELLPRRPELRLILMSATL 456 (1009)
Q Consensus 389 -~~~t~Iiv~T~g~Ll~~L~~~~-~l~~is~IIIDEaHeR~~~~d~ll~llk~ll~~~~~lkvIlmSATl 456 (1009)
..+.+|+++|++.+.+.+.... ....+++|||||+|.-.... .............+..+++++|||+
T Consensus 76 ~~~~~~i~i~t~~~~~~~~~~~~~~~~~~~~iiiDE~h~~~~~~-~~~~~~~~~~~~~~~~~~i~~saTp 144 (144)
T cd00046 76 LSGKTDIVVGTPGRLLDELERLKLSLKKLDLLILDEAHRLLNQG-FGLLGLKILLKLPKDRQVLLLSATP 144 (144)
T ss_pred hcCCCCEEEECcHHHHHHHHcCCcchhcCCEEEEeCHHHHhhcc-hHHHHHHHHhhCCccceEEEEeccC
Confidence 3578999999999988776554 45678999999999532221 1111122233345677899999996
No 124
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.43 E-value=1.8e-12 Score=134.19 Aligned_cols=154 Identities=27% Similarity=0.229 Sum_probs=107.4
Q ss_pred CCCHHHHHHHHHHHHcC-CeEEEEecCCCchhhhHHHHHHHHHHHHhcCCceEEEechhHHHHHHHHHHHHHHHhCCccc
Q 001817 297 LPSYKERDALLKAISEN-QVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERGEKLG 375 (1009)
Q Consensus 297 LPi~~~q~~il~~l~~~-~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~IvvtqPrR~La~qva~rva~e~~~~~g 375 (1009)
.+...+|.+++..+... +++++.|+||||||+.+..++++.... +....++++.|++.++.|+..++.........
T Consensus 7 ~~~~~~Q~~~~~~~~~~~~~~~i~~~~GsGKT~~~~~~~~~~~~~---~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~ 83 (201)
T smart00487 7 EPLRPYQKEAIEALLSGLRDVILAAPTGSGKTLAALLPALEALKR---GKGKRVLVLVPTRELAEQWAEELKKLGPSLGL 83 (201)
T ss_pred CCCCHHHHHHHHHHHcCCCcEEEECCCCCchhHHHHHHHHHHhcc---cCCCcEEEEeCCHHHHHHHHHHHHHHhccCCe
Confidence 34566778888888887 999999999999999898888876643 22356888889999999999999876643221
Q ss_pred ceeeeeeeec------cccCCCcEEEEEccHHHHHHHhcCC-CCCCccEEEEeCCCcCCC--cchHHHHHHHHHcccCCC
Q 001817 376 ESVGYKVRLE------GMKGRDTRLMFCTTGILLRRLLVDR-SLRGVTHVIVDEIHERGM--NEDFLLIVLKELLPRRPE 446 (1009)
Q Consensus 376 ~~vGy~vr~e------~~~~~~t~Iiv~T~g~Ll~~L~~~~-~l~~is~IIIDEaHeR~~--~~d~ll~llk~ll~~~~~ 446 (1009)
....+..... .......+++++|++.+.+.+.... ....++++|+||+|.... ..+.+..++..+ .+.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~t~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~---~~~ 160 (201)
T smart00487 84 KVVGLYGGDSKREQLRKLESGKTDILVTTPGRLLDLLENDLLELSNVDLVILDEAHRLLDGGFGDQLEKLLKLL---PKN 160 (201)
T ss_pred EEEEEeCCcchHHHHHHHhcCCCCEEEeChHHHHHHHHcCCcCHhHCCEEEEECHHHHhcCCcHHHHHHHHHhC---Ccc
Confidence 1111111110 0122223999999999999887765 667889999999997442 223333333222 457
Q ss_pred CcEEEeccCC
Q 001817 447 LRLILMSATL 456 (1009)
Q Consensus 447 lkvIlmSATl 456 (1009)
.++++||||+
T Consensus 161 ~~~v~~saT~ 170 (201)
T smart00487 161 VQLLLLSATP 170 (201)
T ss_pred ceEEEEecCC
Confidence 7899999999
No 125
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.42 E-value=3.3e-12 Score=143.54 Aligned_cols=323 Identities=15% Similarity=0.054 Sum_probs=195.4
Q ss_pred HHHhhcCCCCHHHHHHHHHHHHcCCeEEEEecCCCchhhhHHHHHHHHHHHHhcCCceEEEechhHHHHHHHHHHHH---
Q 001817 290 MLEFRRSLPSYKERDALLKAISENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERV--- 366 (1009)
Q Consensus 290 l~~~r~~LPi~~~q~~il~~l~~~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~IvvtqPrR~La~qva~rv--- 366 (1009)
+++....---+..|.+++..+.+|+++++.-.|.+||+++......+.... ......++..|+.+++....+-.
T Consensus 278 ~~~~~~~E~~~~~~~~~~~~~~~G~~~~~~~~~~~GK~~~~~~~s~~~~~~---~~~s~~~~~~~~~~~~~~~~~~~~V~ 354 (1034)
T KOG4150|consen 278 LLNKNTGESGIAISLELLKFASEGRADGGNEARQAGKGTCPTSGSRKFQTL---CHATNSLLPSEMVEHLRNGSKGQVVH 354 (1034)
T ss_pred HHhcccccchhhhhHHHHhhhhhcccccccchhhcCCccCcccchhhhhhc---CcccceecchhHHHHhhccCCceEEE
Confidence 333333445678889999999999999999999999998766555544332 22334566668888776532211
Q ss_pred ---HHHhCCcccceee-eeeeec----cccCCCcEEEEEccHHHHHHHhcCC-----CCCCccEEEEeCCCcC-CCcchH
Q 001817 367 ---AAERGEKLGESVG-YKVRLE----GMKGRDTRLMFCTTGILLRRLLVDR-----SLRGVTHVIVDEIHER-GMNEDF 432 (1009)
Q Consensus 367 ---a~e~~~~~g~~vG-y~vr~e----~~~~~~t~Iiv~T~g~Ll~~L~~~~-----~l~~is~IIIDEaHeR-~~~~d~ 432 (1009)
..++... .|. |.-..+ .....+.+++|+.|.+.....+.+. .+-...++++||+|-. ++....
T Consensus 355 ~~~I~~~K~A---~V~~~D~~sE~~~~A~~R~~~~~~~s~~~~~~s~~L~~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~~ 431 (1034)
T KOG4150|consen 355 VEVIKARKSA---YVEMSDKLSETTKSALKRIGLNTLYSHQAEAISAALAKSLCYNVPVFEELCKDTNSCALYLFPTKAL 431 (1034)
T ss_pred EEehhhhhcc---eeecccCCCchhHHHHHhcCcceeecCHHHHHHHHhhhccccccHHHHHHHhcccceeeeecchhhH
Confidence 0011000 011 000000 0112457889999988766555433 3445567899999942 222223
Q ss_pred HHHHHHHHcc------cCCCCcEEEeccCC--CHHHHHhhhCC--CCeeccCCcccceeeEehhhHHHHhhhccCccccc
Q 001817 433 LLIVLKELLP------RRPELRLILMSATL--NAELFSSYFGG--APMLHIPGFTYPVRAYFLENILEMTRYRLNTYNQI 502 (1009)
Q Consensus 433 ll~llk~ll~------~~~~lkvIlmSATl--~~~~~~~yf~~--~pvi~i~g~~~pv~~~yl~~i~~~~~~~~~~~~~i 502 (1009)
....++.++. ...+++++-.|||+ +....++.|+- ...+++.|..-.-+...+ ++|+. .
T Consensus 432 ~~~~~R~L~~L~~~F~~~~~~~~~~~~~~~K~~~~~~~~~~~~~E~~Li~~DGSPs~~K~~V~----------WNP~~-~ 500 (1034)
T KOG4150|consen 432 AQDQLRALSDLIKGFEASINMGVYDGDTPYKDRTRLRSELANLSELELVTIDGSPSSEKLFVL----------WNPSA-P 500 (1034)
T ss_pred HHHHHHHHHHHHHHHHhhcCcceEeCCCCcCCHHHHHHHhcCCcceEEEEecCCCCccceEEE----------eCCCC-C
Confidence 3333333332 34578999999999 44556667763 344566665432222111 00000 0
Q ss_pred ccchhhhHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhcchhhhhhhccccCCCCCcchhhHHHHHHHHHhhcCCCcEEE
Q 001817 503 DDYGQEKSWKMQKQALALRKRKSSIASAVEDALEAADFREYSVQTQQSLSCWNPDSIGFNLIEHVLCHIVKKERPGAVLV 582 (1009)
Q Consensus 503 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLV 582 (1009)
... + .++.+.+. ....++..+.. .+-+++.
T Consensus 501 P~~------~--------~~~~~~i~----------------------------------E~s~~~~~~i~--~~~R~IA 530 (1034)
T KOG4150|consen 501 PTS------K--------SEKSSKVV----------------------------------EVSHLFAEMVQ--HGLRCIA 530 (1034)
T ss_pred Ccc------h--------hhhhhHHH----------------------------------HHHHHHHHHHH--cCCcEEE
Confidence 000 0 00000000 01122333333 3468999
Q ss_pred EcCCHhHHHHHHHHHHcCCC-CCCCCCeEEEEecCCCCHHHHHhhcCCCCCCceEEEEecCccccccCCCCeeEEEeCCC
Q 001817 583 FMTGWDDINSLKDQLQAHPL-LGDPSRVLLLACHGSMASSEQRLIFDKPEDGVRKIVLATNMAETSITINDVVFVIDCGK 661 (1009)
Q Consensus 583 Fl~~~~~i~~l~~~L~~~~~-~~~~~~~~v~~lHs~l~~~er~~v~~~f~~G~~kVLVATniae~GIdIp~V~~VId~g~ 661 (1009)
||+.++-++-+....++... .+...-..|..+.||-..++|++++...-.|+..-|||||.+|.||||...+.|+.+|+
T Consensus 531 FC~~R~~CEL~~~~~R~I~~ET~~~LV~~i~SYRGGY~A~DRRKIE~~~F~G~L~giIaTNALELGIDIG~LDAVl~~GF 610 (1034)
T KOG4150|consen 531 FCPSRKLCELVLCLTREILAETAPHLVEAITSYRGGYIAEDRRKIESDLFGGKLCGIIATNALELGIDIGHLDAVLHLGF 610 (1034)
T ss_pred eccHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcCccchhhHHHHHHHhhCCeeeEEEecchhhhccccccceeEEEccC
Confidence 99999888776554433100 00000112567789999999999999988999999999999999999999999999999
Q ss_pred CccccccCCCCCCcccccccCHHhHHhhhcccCCCC
Q 001817 662 AKETSYDALNNTPCLLPSWISKAAARQRRGRAGRVQ 697 (1009)
Q Consensus 662 ~k~~~yd~~~~~~~l~~~~iS~as~~QR~GRAGR~~ 697 (1009)
|. |.++++|..|||||..
T Consensus 611 P~------------------S~aNl~QQ~GRAGRRN 628 (1034)
T KOG4150|consen 611 PG------------------SIANLWQQAGRAGRRN 628 (1034)
T ss_pred ch------------------hHHHHHHHhccccccC
Confidence 97 9999999999999984
No 126
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.40 E-value=1e-12 Score=127.61 Aligned_cols=103 Identities=25% Similarity=0.374 Sum_probs=92.3
Q ss_pred CCCcEEEEcCCHhHHHHHHHHHHcCCCCCCCCCeEEEEecCCCCHHHHHhhcCCCCCCceEEEEecCccccccCCCCeeE
Q 001817 576 RPGAVLVFMTGWDDINSLKDQLQAHPLLGDPSRVLLLACHGSMASSEQRLIFDKPEDGVRKIVLATNMAETSITINDVVF 655 (1009)
Q Consensus 576 ~~g~iLVFl~~~~~i~~l~~~L~~~~~~~~~~~~~v~~lHs~l~~~er~~v~~~f~~G~~kVLVATniae~GIdIp~V~~ 655 (1009)
..+++|||+++...++.+++.|... ...+..+||+++..+|..+++.|.+|..+||++|+++++|+|+|+++.
T Consensus 27 ~~~~~lvf~~~~~~~~~~~~~l~~~-------~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ili~t~~~~~G~d~~~~~~ 99 (131)
T cd00079 27 KGGKVLIFCPSKKMLDELAELLRKP-------GIKVAALHGDGSQEEREEVLKDFREGEIVVLVATDVIARGIDLPNVSV 99 (131)
T ss_pred CCCcEEEEeCcHHHHHHHHHHHHhc-------CCcEEEEECCCCHHHHHHHHHHHHcCCCcEEEEcChhhcCcChhhCCE
Confidence 4689999999999999999999873 556899999999999999999999999999999999999999999999
Q ss_pred EEeCCCCccccccCCCCCCcccccccCHHhHHhhhcccCCCC-CCcEEE
Q 001817 656 VIDCGKAKETSYDALNNTPCLLPSWISKAAARQRRGRAGRVQ-PGECYH 703 (1009)
Q Consensus 656 VId~g~~k~~~yd~~~~~~~l~~~~iS~as~~QR~GRAGR~~-~G~c~~ 703 (1009)
||..+.+. +...+.|++||+||.+ .|.|+.
T Consensus 100 vi~~~~~~------------------~~~~~~Q~~GR~~R~~~~~~~~~ 130 (131)
T cd00079 100 VINYDLPW------------------SPSSYLQRIGRAGRAGQKGTAIL 130 (131)
T ss_pred EEEeCCCC------------------CHHHheecccccccCCCCceEEe
Confidence 99866543 7788899999999997 577764
No 127
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=99.37 E-value=1.4e-12 Score=158.94 Aligned_cols=124 Identities=19% Similarity=0.186 Sum_probs=102.4
Q ss_pred HHHHHHHHhh-cCCCcEEEEcCCHhHHHHHHHHHHcCCCCCCCCCeEEEEecCCCCHHHHHhhcCCCCCCceEEEEecCc
Q 001817 565 EHVLCHIVKK-ERPGAVLVFMTGWDDINSLKDQLQAHPLLGDPSRVLLLACHGSMASSEQRLIFDKPEDGVRKIVLATNM 643 (1009)
Q Consensus 565 ~~ll~~i~~~-~~~g~iLVFl~~~~~i~~l~~~L~~~~~~~~~~~~~v~~lHs~l~~~er~~v~~~f~~G~~kVLVATni 643 (1009)
..++..+... ..+.++|||+++++.++.+++.|... ++.+..+||+++..+|.+++..|+.|.+.|+|||++
T Consensus 429 ~~Ll~eI~~~~~~g~~vLIf~~tk~~ae~L~~~L~~~-------gi~~~~lh~~~~~~eR~~~l~~fr~G~i~VLV~t~~ 501 (655)
T TIGR00631 429 DDLLSEIRQRVARNERVLVTTLTKKMAEDLTDYLKEL-------GIKVRYLHSEIDTLERVEIIRDLRLGEFDVLVGINL 501 (655)
T ss_pred HHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhhh-------ccceeeeeCCCCHHHHHHHHHHHhcCCceEEEEcCh
Confidence 3444454433 34568999999999999999999886 667889999999999999999999999999999999
Q ss_pred cccccCCCCeeEEEeCCCCccccccCCCCCCcccccccCHHhHHhhhcccCCCCCCcEEEecchh
Q 001817 644 AETSITINDVVFVIDCGKAKETSYDALNNTPCLLPSWISKAAARQRRGRAGRVQPGECYHLYPRY 708 (1009)
Q Consensus 644 ae~GIdIp~V~~VId~g~~k~~~yd~~~~~~~l~~~~iS~as~~QR~GRAGR~~~G~c~~Lys~~ 708 (1009)
+++|+|+|++++||.++.-. | ..+-|..+|+||+|||||..+|.|+.+++..
T Consensus 502 L~rGfDiP~v~lVvi~Dadi---f----------G~p~~~~~~iqriGRagR~~~G~vi~~~~~~ 553 (655)
T TIGR00631 502 LREGLDLPEVSLVAILDADK---E----------GFLRSERSLIQTIGRAARNVNGKVIMYADKI 553 (655)
T ss_pred hcCCeeeCCCcEEEEeCccc---c----------cCCCCHHHHHHHhcCCCCCCCCEEEEEEcCC
Confidence 99999999999999855211 0 0112778999999999999999998887643
No 128
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=99.37 E-value=8.3e-11 Score=144.36 Aligned_cols=98 Identities=21% Similarity=0.102 Sum_probs=69.4
Q ss_pred EEEEcCCHhHHHHHHHHHHcCCCCCCCCCeEEEEecCCCCHHHHHhhcCC--------------------------CCCC
Q 001817 580 VLVFMTGWDDINSLKDQLQAHPLLGDPSRVLLLACHGSMASSEQRLIFDK--------------------------PEDG 633 (1009)
Q Consensus 580 iLVFl~~~~~i~~l~~~L~~~~~~~~~~~~~v~~lHs~l~~~er~~v~~~--------------------------f~~G 633 (1009)
.||=+.+.+.+-.++..|....... ...+.+..+||..+...|..+++. ...+
T Consensus 759 GliR~anI~p~V~~A~~L~~~~~~~-~~~i~~~~yHSr~~l~~Rs~~E~~Ld~~L~R~~~~~~~~~~~i~~~l~~~~~~~ 837 (1110)
T TIGR02562 759 GLIRVANIDPLIRLAQFLYALLAEE-KYQIHLCCYHAQDPLLLRSYIERRLDQLLTRHKPEQLFQDDEIIDLMQNSPALN 837 (1110)
T ss_pred EEEEEcCchHHHHHHHHHHhhcccc-CCceeEEEecccChHHHHHHHHHHHHHHhcccChhhhhchHHHHHHHhcccccC
Confidence 3566788888888888887653222 235678889999877666654422 1235
Q ss_pred ceEEEEecCccccccCCCCeeEEEeCCCCccccccCCCCCCcccccccCHHhHHhhhcccCCCCCC
Q 001817 634 VRKIVLATNMAETSITINDVVFVIDCGKAKETSYDALNNTPCLLPSWISKAAARQRRGRAGRVQPG 699 (1009)
Q Consensus 634 ~~kVLVATniae~GIdIp~V~~VId~g~~k~~~yd~~~~~~~l~~~~iS~as~~QR~GRAGR~~~G 699 (1009)
...|+|||.+.|.|+|++ .+++|- .+.+..+.+||+||..|.+.+
T Consensus 838 ~~~i~v~Tqv~E~g~D~d-fd~~~~--------------------~~~~~~sliQ~aGR~~R~~~~ 882 (1110)
T TIGR02562 838 HLFIVLATPVEEVGRDHD-YDWAIA--------------------DPSSMRSIIQLAGRVNRHRLE 882 (1110)
T ss_pred CCeEEEEeeeEEEEeccc-CCeeee--------------------ccCcHHHHHHHhhcccccccC
Confidence 779999999999999995 444442 334677888999999998653
No 129
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.35 E-value=5e-13 Score=118.44 Aligned_cols=72 Identities=29% Similarity=0.402 Sum_probs=67.7
Q ss_pred CeEEEEecCCCCHHHHHhhcCCCCCCceEEEEecCccccccCCCCeeEEEeCCCCccccccCCCCCCcccccccCHHhHH
Q 001817 608 RVLLLACHGSMASSEQRLIFDKPEDGVRKIVLATNMAETSITINDVVFVIDCGKAKETSYDALNNTPCLLPSWISKAAAR 687 (1009)
Q Consensus 608 ~~~v~~lHs~l~~~er~~v~~~f~~G~~kVLVATniae~GIdIp~V~~VId~g~~k~~~yd~~~~~~~l~~~~iS~as~~ 687 (1009)
++.+..+||+++.++|+.+++.|.+|..+|||||+++++|||+|++++||.++.+. |..+|.
T Consensus 7 ~~~~~~i~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gid~~~~~~vi~~~~~~------------------~~~~~~ 68 (78)
T PF00271_consen 7 GIKVAIIHGDMSQKERQEILKKFNSGEIRVLIATDILGEGIDLPDASHVIFYDPPW------------------SPEEYI 68 (78)
T ss_dssp TSSEEEESTTSHHHHHHHHHHHHHTTSSSEEEESCGGTTSSTSTTESEEEESSSES------------------SHHHHH
T ss_pred CCcEEEEECCCCHHHHHHHHHHhhccCceEEEeeccccccccccccccccccccCC------------------CHHHHH
Confidence 66799999999999999999999999999999999999999999999999987765 888999
Q ss_pred hhhcccCCCC
Q 001817 688 QRRGRAGRVQ 697 (1009)
Q Consensus 688 QR~GRAGR~~ 697 (1009)
|++||+||.|
T Consensus 69 Q~~GR~~R~g 78 (78)
T PF00271_consen 69 QRIGRAGRIG 78 (78)
T ss_dssp HHHTTSSTTT
T ss_pred HHhhcCCCCC
Confidence 9999999975
No 130
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]
Probab=99.32 E-value=6.7e-12 Score=139.78 Aligned_cols=312 Identities=14% Similarity=0.137 Sum_probs=179.2
Q ss_pred CHHHHHHHHHHHHcC---CeEEEEecCCCchhhhHHHHHHHHHHHHhcCCceEEEechhHHHHHHHHHHHHHHHhCCccc
Q 001817 299 SYKERDALLKAISEN---QVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERGEKLG 375 (1009)
Q Consensus 299 i~~~q~~il~~l~~~---~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~IvvtqPrR~La~qva~rva~e~~~~~g 375 (1009)
+.++|+.-+..+-.| +..||+.|.|+|||++-.-.+-. -.+.|.++| ..-..+.|+...+.......-.
T Consensus 303 iRpYQEksL~KMFGNgRARSGiIVLPCGAGKtLVGvTAa~t------ikK~clvLc--ts~VSVeQWkqQfk~wsti~d~ 374 (776)
T KOG1123|consen 303 IRPYQEKSLSKMFGNGRARSGIIVLPCGAGKTLVGVTAACT------IKKSCLVLC--TSAVSVEQWKQQFKQWSTIQDD 374 (776)
T ss_pred cCchHHHHHHHHhCCCcccCceEEEecCCCCceeeeeeeee------ecccEEEEe--cCccCHHHHHHHHHhhcccCcc
Confidence 456778777777654 46889999999999665433321 235677777 5667888988888666554433
Q ss_pred ceeeeeeeeccccCCCcEEEEEccHHHHHHHhcCC---------CCCCccEEEEeCCCcCCCcchHHHHHHHHHcccCCC
Q 001817 376 ESVGYKVRLEGMKGRDTRLMFCTTGILLRRLLVDR---------SLRGVTHVIVDEIHERGMNEDFLLIVLKELLPRRPE 446 (1009)
Q Consensus 376 ~~vGy~vr~e~~~~~~t~Iiv~T~g~Ll~~L~~~~---------~l~~is~IIIDEaHeR~~~~d~ll~llk~ll~~~~~ 446 (1009)
..+-+..........++.|+|+|..++..--.+.. .-..++++|+||+|- +....+..++..+...+
T Consensus 375 ~i~rFTsd~Ke~~~~~~gvvvsTYsMva~t~kRS~eaek~m~~l~~~EWGllllDEVHv--vPA~MFRRVlsiv~aHc-- 450 (776)
T KOG1123|consen 375 QICRFTSDAKERFPSGAGVVVTTYSMVAYTGKRSHEAEKIMDFLRGREWGLLLLDEVHV--VPAKMFRRVLSIVQAHC-- 450 (776)
T ss_pred ceEEeeccccccCCCCCcEEEEeeehhhhcccccHHHHHHHHHHhcCeeeeEEeehhcc--chHHHHHHHHHHHHHHh--
Confidence 33333332223334567899999877642111110 235678999999995 55555555555554443
Q ss_pred CcEEEeccCCC--HHHHHh--hhCCCCeec-----cCCcccceeeEehhhHHHHhhhccCcccccccchhhhHHHHHHHH
Q 001817 447 LRLILMSATLN--AELFSS--YFGGAPMLH-----IPGFTYPVRAYFLENILEMTRYRLNTYNQIDDYGQEKSWKMQKQA 517 (1009)
Q Consensus 447 lkvIlmSATl~--~~~~~~--yf~~~pvi~-----i~g~~~pv~~~yl~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 517 (1009)
-++++||+- .+.+.+ |+-|+.... .....|-.++...+-.+.|+.
T Consensus 451 --KLGLTATLvREDdKI~DLNFLIGPKlYEAnWmdL~~kGhIA~VqCaEVWCpMt~------------------------ 504 (776)
T KOG1123|consen 451 --KLGLTATLVREDDKITDLNFLIGPKLYEANWMDLQKKGHIAKVQCAEVWCPMTP------------------------ 504 (776)
T ss_pred --hccceeEEeeccccccccceeecchhhhccHHHHHhCCceeEEeeeeeecCCCH------------------------
Confidence 389999982 222221 111111000 000001111111110000000
Q ss_pred HHHHhhhhhHHHHHHHHHHHhhhcchhhhhhhccccCCCCCcchhhHHHHHHHHHhhcCCCcEEEEcCCHhHHHHHHHHH
Q 001817 518 LALRKRKSSIASAVEDALEAADFREYSVQTQQSLSCWNPDSIGFNLIEHVLCHIVKKERPGAVLVFMTGWDDINSLKDQL 597 (1009)
Q Consensus 518 ~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~~~~i~~l~~~L 597 (1009)
+-..+.+.+. ......|..++|... . ..+.|...++. .+.+||||..+.-.....+-.|
T Consensus 505 -------eFy~eYL~~~----------t~kr~lLyvMNP~KF--r-aCqfLI~~HE~-RgDKiIVFsDnvfALk~YAikl 563 (776)
T KOG1123|consen 505 -------EFYREYLREN----------TRKRMLLYVMNPNKF--R-ACQFLIKFHER-RGDKIIVFSDNVFALKEYAIKL 563 (776)
T ss_pred -------HHHHHHHhhh----------hhhhheeeecCcchh--H-HHHHHHHHHHh-cCCeEEEEeccHHHHHHHHHHc
Confidence 0000111100 001112223333321 1 12233344443 5679999998877666666555
Q ss_pred HcCCCCCCCCCeEEEEecCCCCHHHHHhhcCCCCC-CceEEEEecCccccccCCCCeeEEEeCCCCccccccCCCCCCcc
Q 001817 598 QAHPLLGDPSRVLLLACHGSMASSEQRLIFDKPED-GVRKIVLATNMAETSITINDVVFVIDCGKAKETSYDALNNTPCL 676 (1009)
Q Consensus 598 ~~~~~~~~~~~~~v~~lHs~l~~~er~~v~~~f~~-G~~kVLVATniae~GIdIp~V~~VId~g~~k~~~yd~~~~~~~l 676 (1009)
.+. .++|..++.||.+|++.|+- ..++-|+-.-++.++||+|..++.|+..-.
T Consensus 564 ~Kp------------fIYG~Tsq~ERm~ILqnFq~n~~vNTIFlSKVgDtSiDLPEAnvLIQISSH-------------- 617 (776)
T KOG1123|consen 564 GKP------------FIYGPTSQNERMKILQNFQTNPKVNTIFLSKVGDTSIDLPEANVLIQISSH-------------- 617 (776)
T ss_pred CCc------------eEECCCchhHHHHHHHhcccCCccceEEEeeccCccccCCcccEEEEEccc--------------
Confidence 443 57899999999999999985 467889999999999999999999973211
Q ss_pred cccccCHHhHHhhhcccCCCCC
Q 001817 677 LPSWISKAAARQRRGRAGRVQP 698 (1009)
Q Consensus 677 ~~~~iS~as~~QR~GRAGR~~~ 698 (1009)
.=|+.+-.||.||.-|...
T Consensus 618 ---~GSRRQEAQRLGRILRAKk 636 (776)
T KOG1123|consen 618 ---GGSRRQEAQRLGRILRAKK 636 (776)
T ss_pred ---ccchHHHHHHHHHHHHHhh
Confidence 1267777899999988843
No 131
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=99.31 E-value=1.2e-11 Score=119.95 Aligned_cols=134 Identities=22% Similarity=0.246 Sum_probs=87.7
Q ss_pred cCCeEEEEecCCCchhhh-HHHHHHHHHHHHhcCCceEEEechhHHHHHHHHHHHHHHHhCCcccceeeeeeeec-cccC
Q 001817 312 ENQVVVVSGETGCGKTTQ-LPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERGEKLGESVGYKVRLE-GMKG 389 (1009)
Q Consensus 312 ~~~~vII~apTGSGKTt~-~~~~ile~~~~~~~~~~~~IvvtqPrR~La~qva~rva~e~~~~~g~~vGy~vr~e-~~~~ 389 (1009)
+++..+|-..+|+|||+. .|..+.+.+ . .+.+++++.|||.+|.++++.+. .. .+.+....- ....
T Consensus 3 kg~~~~~d~hpGaGKTr~vlp~~~~~~i-~----~~~rvLvL~PTRvva~em~~aL~-----~~--~~~~~t~~~~~~~~ 70 (148)
T PF07652_consen 3 KGELTVLDLHPGAGKTRRVLPEIVREAI-K----RRLRVLVLAPTRVVAEEMYEALK-----GL--PVRFHTNARMRTHF 70 (148)
T ss_dssp TTEEEEEE--TTSSTTTTHHHHHHHHHH-H----TT--EEEEESSHHHHHHHHHHTT-----TS--SEEEESTTSS----
T ss_pred CCceeEEecCCCCCCcccccHHHHHHHH-H----ccCeEEEecccHHHHHHHHHHHh-----cC--CcccCceeeecccc
Confidence 567889999999999996 555555544 2 35688999999999999888772 11 233332221 1223
Q ss_pred CCcEEEEEccHHHHHHHhcCCCCCCccEEEEeCCCcCCCcchHHHHHHHHHcccCCCCcEEEeccCCCH
Q 001817 390 RDTRLMFCTTGILLRRLLVDRSLRGVTHVIVDEIHERGMNEDFLLIVLKELLPRRPELRLILMSATLNA 458 (1009)
Q Consensus 390 ~~t~Iiv~T~g~Ll~~L~~~~~l~~is~IIIDEaHeR~~~~d~ll~llk~ll~~~~~lkvIlmSATl~~ 458 (1009)
.+.-|-++|.+.+.+.+.+...+.++++||+||||--+..+-...+.++.... ....++|+||||++.
T Consensus 71 g~~~i~vMc~at~~~~~~~p~~~~~yd~II~DEcH~~Dp~sIA~rg~l~~~~~-~g~~~~i~mTATPPG 138 (148)
T PF07652_consen 71 GSSIIDVMCHATYGHFLLNPCRLKNYDVIIMDECHFTDPTSIAARGYLRELAE-SGEAKVIFMTATPPG 138 (148)
T ss_dssp SSSSEEEEEHHHHHHHHHTSSCTTS-SEEEECTTT--SHHHHHHHHHHHHHHH-TTS-EEEEEESS-TT
T ss_pred CCCcccccccHHHHHHhcCcccccCccEEEEeccccCCHHHHhhheeHHHhhh-ccCeeEEEEeCCCCC
Confidence 55678899999999988886688999999999999644444445555655533 345789999999854
No 132
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=99.30 E-value=2.1e-10 Score=129.85 Aligned_cols=109 Identities=20% Similarity=0.188 Sum_probs=93.7
Q ss_pred CCCcEEEEcCCHhHHHHHHHHHHcCCCCCCCCCeEEEEecCCCCHHHHHhhcCCCCCCceEEEEecCccccccCCCCeeE
Q 001817 576 RPGAVLVFMTGWDDINSLKDQLQAHPLLGDPSRVLLLACHGSMASSEQRLIFDKPEDGVRKIVLATNMAETSITINDVVF 655 (1009)
Q Consensus 576 ~~g~iLVFl~~~~~i~~l~~~L~~~~~~~~~~~~~v~~lHs~l~~~er~~v~~~f~~G~~kVLVATniae~GIdIp~V~~ 655 (1009)
.+.++||-+-|++.++.|.++|.+. ++.+.++||.+..-||.+++...+.|...|||.-|.+-.|+|+|.|..
T Consensus 445 ~~eRvLVTtLTKkmAEdLT~Yl~e~-------gikv~YlHSdidTlER~eIirdLR~G~~DvLVGINLLREGLDiPEVsL 517 (663)
T COG0556 445 KNERVLVTTLTKKMAEDLTEYLKEL-------GIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGLDLPEVSL 517 (663)
T ss_pred cCCeEEEEeehHHHHHHHHHHHHhc-------CceEEeeeccchHHHHHHHHHHHhcCCccEEEeehhhhccCCCcceeE
Confidence 3479999999999999999999997 889999999999999999999999999999999999999999999977
Q ss_pred EEeCCCCccccccCCCCCCcccccccCHHhHHhhhcccCCCCCCcEEEe
Q 001817 656 VIDCGKAKETSYDALNNTPCLLPSWISKAAARQRRGRAGRVQPGECYHL 704 (1009)
Q Consensus 656 VId~g~~k~~~yd~~~~~~~l~~~~iS~as~~QR~GRAGR~~~G~c~~L 704 (1009)
|--.+.-|+-. | =|-.+.+|-+|||.|.-.|+++..
T Consensus 518 VAIlDADKeGF---------L----Rse~SLIQtIGRAARN~~GkvIlY 553 (663)
T COG0556 518 VAILDADKEGF---------L----RSERSLIQTIGRAARNVNGKVILY 553 (663)
T ss_pred EEEeecCcccc---------c----cccchHHHHHHHHhhccCCeEEEE
Confidence 65433322111 1 166788899999999999998765
No 133
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=99.30 E-value=7.3e-12 Score=153.73 Aligned_cols=122 Identities=20% Similarity=0.186 Sum_probs=102.5
Q ss_pred HHHHHHHhh-cCCCcEEEEcCCHhHHHHHHHHHHcCCCCCCCCCeEEEEecCCCCHHHHHhhcCCCCCCceEEEEecCcc
Q 001817 566 HVLCHIVKK-ERPGAVLVFMTGWDDINSLKDQLQAHPLLGDPSRVLLLACHGSMASSEQRLIFDKPEDGVRKIVLATNMA 644 (1009)
Q Consensus 566 ~ll~~i~~~-~~~g~iLVFl~~~~~i~~l~~~L~~~~~~~~~~~~~v~~lHs~l~~~er~~v~~~f~~G~~kVLVATnia 644 (1009)
.++..+... ..+.++||||++...++.+++.|... ++.+..+||+++..+|..++..|+.|...|+|||+++
T Consensus 434 ~L~~~L~~~~~~g~~viIf~~t~~~ae~L~~~L~~~-------gi~~~~~h~~~~~~~R~~~l~~f~~g~i~vlV~t~~L 506 (652)
T PRK05298 434 DLLSEIRKRVAKGERVLVTTLTKRMAEDLTDYLKEL-------GIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLL 506 (652)
T ss_pred HHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHhhc-------ceeEEEEECCCCHHHHHHHHHHHHcCCceEEEEeCHH
Confidence 344444332 24568999999999999999999886 7789999999999999999999999999999999999
Q ss_pred ccccCCCCeeEEEeCCCCccccccCCCCCCcccccccCHHhHHhhhcccCCCCCCcEEEecch
Q 001817 645 ETSITINDVVFVIDCGKAKETSYDALNNTPCLLPSWISKAAARQRRGRAGRVQPGECYHLYPR 707 (1009)
Q Consensus 645 e~GIdIp~V~~VId~g~~k~~~yd~~~~~~~l~~~~iS~as~~QR~GRAGR~~~G~c~~Lys~ 707 (1009)
++|+|+|++++||.++.+. |. -+-+..+|+||+|||||...|.|+.+++.
T Consensus 507 ~rGfdlp~v~lVii~d~ei---fG----------~~~~~~~yiqr~GR~gR~~~G~~i~~~~~ 556 (652)
T PRK05298 507 REGLDIPEVSLVAILDADK---EG----------FLRSERSLIQTIGRAARNVNGKVILYADK 556 (652)
T ss_pred hCCccccCCcEEEEeCCcc---cc----------cCCCHHHHHHHhccccCCCCCEEEEEecC
Confidence 9999999999999865432 10 11277889999999999989999998874
No 134
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.27 E-value=5.3e-10 Score=140.28 Aligned_cols=128 Identities=14% Similarity=0.118 Sum_probs=83.7
Q ss_pred HHHHHHHHHhhcCCCcEEEEcCCHhHHHHHHHHHHcCCCCCCCCCeEEEEecC-CCCHHHHHhhcCCCCCCceEEEEecC
Q 001817 564 IEHVLCHIVKKERPGAVLVFMTGWDDINSLKDQLQAHPLLGDPSRVLLLACHG-SMASSEQRLIFDKPEDGVRKIVLATN 642 (1009)
Q Consensus 564 i~~ll~~i~~~~~~g~iLVFl~~~~~i~~l~~~L~~~~~~~~~~~~~v~~lHs-~l~~~er~~v~~~f~~G~~kVLVATn 642 (1009)
+...+..+. ..+|++||++++.+..+.+++.|... ...+ ...| +.+ +..+.+.|+.+...||++|+
T Consensus 636 ~~~~i~~~~--~~~g~~LVLFtS~~~l~~v~~~l~~~-------~~~~-l~Qg~~~~---~~~l~~~F~~~~~~vLlG~~ 702 (820)
T PRK07246 636 IAKRLEELK--QLQQPILVLFNSKKHLLAVSDLLDQW-------QVSH-LAQEKNGT---AYNIKKRFDRGEQQILLGLG 702 (820)
T ss_pred HHHHHHHHH--hcCCCEEEEECcHHHHHHHHHHHhhc-------CCcE-EEeCCCcc---HHHHHHHHHcCCCeEEEecc
Confidence 344444444 35689999999999999999999643 1223 2233 222 34567788888889999999
Q ss_pred ccccccCCC--CeeEEEeCCCCccccccCC----------CCCCcccc--cccCHHhHHhhhcccCCCC--CCcEEEe
Q 001817 643 MAETSITIN--DVVFVIDCGKAKETSYDAL----------NNTPCLLP--SWISKAAARQRRGRAGRVQ--PGECYHL 704 (1009)
Q Consensus 643 iae~GIdIp--~V~~VId~g~~k~~~yd~~----------~~~~~l~~--~~iS~as~~QR~GRAGR~~--~G~c~~L 704 (1009)
..-+|||+| +...||-.++|-..-.||. .+-..+.. .|-....++|-+||.=|.. .|.++.|
T Consensus 703 sFwEGVD~p~~~~~~viI~kLPF~~P~dP~~~a~~~~~~~~g~~~F~~~~lP~A~iklkQg~GRLIRs~~D~Gvv~il 780 (820)
T PRK07246 703 SFWEGVDFVQADRMIEVITRLPFDNPEDPFVKKMNQYLLQEGKNPFYDYFLPMTILRLKQAIGRTMRREDQKSAVLIL 780 (820)
T ss_pred hhhCCCCCCCCCeEEEEEecCCCCCCCCHHHHHHHHHHHHhCCCchhheeHHHHHHHHHHHhcccccCCCCcEEEEEE
Confidence 999999997 4566677888843222211 11111211 1222356889999999985 3776655
No 135
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=99.27 E-value=1.9e-11 Score=126.01 Aligned_cols=145 Identities=18% Similarity=0.145 Sum_probs=91.3
Q ss_pred CHHHHHHHHHHHHc-------CCeEEEEecCCCchhhhHHHHHHHHHHHHhcCCceEEEechhHHHHHHHHHHHHHHHhC
Q 001817 299 SYKERDALLKAISE-------NQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERG 371 (1009)
Q Consensus 299 i~~~q~~il~~l~~-------~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~IvvtqPrR~La~qva~rva~e~~ 371 (1009)
.+.+|.+++..+.+ ++.+++.+|||||||..+..++.+.. . ++++++|+..++.|..+.+.....
T Consensus 4 lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~----~----~~l~~~p~~~l~~Q~~~~~~~~~~ 75 (184)
T PF04851_consen 4 LRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILELA----R----KVLIVAPNISLLEQWYDEFDDFGS 75 (184)
T ss_dssp E-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHH----C----EEEEEESSHHHHHHHHHHHHHHST
T ss_pred CCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhccc----c----ceeEecCHHHHHHHHHHHHHHhhh
Confidence 45667777776653 68999999999999988776665532 1 677777999999999998844332
Q ss_pred Ccccce--------ee--------eeeeeccccCCCcEEEEEccHHHHHHHhcCC------------CCCCccEEEEeCC
Q 001817 372 EKLGES--------VG--------YKVRLEGMKGRDTRLMFCTTGILLRRLLVDR------------SLRGVTHVIVDEI 423 (1009)
Q Consensus 372 ~~~g~~--------vG--------y~vr~e~~~~~~t~Iiv~T~g~Ll~~L~~~~------------~l~~is~IIIDEa 423 (1009)
...... .+ ..............++++|...+........ .....++||+|||
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vI~DEa 155 (184)
T PF04851_consen 76 EKYNFFEKSIKPAYDSKEFISIQDDISDKSESDNNDKDIILTTYQSLQSDIKEEKKIDESARRSYKLLKNKFDLVIIDEA 155 (184)
T ss_dssp TSEEEEE--GGGCCE-SEEETTTTEEEHHHHHCBSS-SEEEEEHHHHHHHHHH---------GCHHGGGGSESEEEEETG
T ss_pred hhhhhcccccccccccccccccccccccccccccccccchhhHHHHHHhhcccccccccchhhhhhhccccCCEEEEehh
Confidence 211110 00 0001111123467899999999887764311 3457789999999
Q ss_pred CcCCCcchHHHHHHHHHcccCCCCcEEEeccCCC
Q 001817 424 HERGMNEDFLLIVLKELLPRRPELRLILMSATLN 457 (1009)
Q Consensus 424 HeR~~~~d~ll~llk~ll~~~~~lkvIlmSATl~ 457 (1009)
|+ ...+.. ++.++. .+...+|+||||+.
T Consensus 156 H~--~~~~~~---~~~i~~-~~~~~~l~lTATp~ 183 (184)
T PF04851_consen 156 HH--YPSDSS---YREIIE-FKAAFILGLTATPF 183 (184)
T ss_dssp GC--THHHHH---HHHHHH-SSCCEEEEEESS-S
T ss_pred hh--cCCHHH---HHHHHc-CCCCeEEEEEeCcc
Confidence 96 222221 222222 56677999999974
No 136
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=99.23 E-value=2.3e-09 Score=125.57 Aligned_cols=372 Identities=19% Similarity=0.157 Sum_probs=196.6
Q ss_pred HHHHHHHHHHH----HcCCeEEEEecCCCchhhhHHHHHHHHHHHHhcCCceEEEechhHHHHHHHHHHHHHHHh-CCcc
Q 001817 300 YKERDALLKAI----SENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAER-GEKL 374 (1009)
Q Consensus 300 ~~~q~~il~~l----~~~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~IvvtqPrR~La~qva~rva~e~-~~~~ 374 (1009)
..+|-+=+.++ .++-+.|+.-+-|-|||+|..-++..... .++..+..+|++|.-.|.+= ...+++.. +..+
T Consensus 169 r~YQveGlnWLi~l~engingILaDEMGLGKTlQtIs~l~yl~~--~~~~~GPfLVi~P~StL~NW-~~Ef~rf~P~l~~ 245 (971)
T KOG0385|consen 169 RDYQLEGLNWLISLYENGINGILADEMGLGKTLQTISLLGYLKG--RKGIPGPFLVIAPKSTLDNW-MNEFKRFTPSLNV 245 (971)
T ss_pred chhhhccHHHHHHHHhcCcccEeehhcccchHHHHHHHHHHHHH--hcCCCCCeEEEeeHhhHHHH-HHHHHHhCCCcce
Confidence 34444444443 56778999999999999887655433221 13333445555598776543 34444433 2223
Q ss_pred cceeeee-----eeeccccCCCcEEEEEccHHHHHHHhcCCCCCCccEEEEeCCCcCCCcch-HHHHHHHHHcccCCCCc
Q 001817 375 GESVGYK-----VRLEGMKGRDTRLMFCTTGILLRRLLVDRSLRGVTHVIVDEIHERGMNED-FLLIVLKELLPRRPELR 448 (1009)
Q Consensus 375 g~~vGy~-----vr~e~~~~~~t~Iiv~T~g~Ll~~L~~~~~l~~is~IIIDEaHeR~~~~d-~ll~llk~ll~~~~~lk 448 (1009)
-..+|-. .+-+-......+|+++|.++.++.-. --.--+++++||||+| |--+.. .+...++.+... .
T Consensus 246 ~~~~Gdk~eR~~~~r~~~~~~~fdV~iTsYEi~i~dk~-~lk~~~W~ylvIDEaH-RiKN~~s~L~~~lr~f~~~----n 319 (971)
T KOG0385|consen 246 VVYHGDKEERAALRRDIMLPGRFDVCITSYEIAIKDKS-FLKKFNWRYLVIDEAH-RIKNEKSKLSKILREFKTD----N 319 (971)
T ss_pred EEEeCCHHHHHHHHHHhhccCCCceEeehHHHHHhhHH-HHhcCCceEEEechhh-hhcchhhHHHHHHHHhccc----c
Confidence 3333411 01111122468999999999886411 0012356899999999 434443 333444444332 3
Q ss_pred EEEeccCC--C-------------------HHHHHhhhCCCCeeccCCc------cccee-eEehhhHHHHhhhccCccc
Q 001817 449 LILMSATL--N-------------------AELFSSYFGGAPMLHIPGF------TYPVR-AYFLENILEMTRYRLNTYN 500 (1009)
Q Consensus 449 vIlmSATl--~-------------------~~~~~~yf~~~pvi~i~g~------~~pv~-~~yl~~i~~~~~~~~~~~~ 500 (1009)
-++++.|+ | .+.|.+||... ...|. .++|- -+.+..+..-....+.+..
T Consensus 320 rLLlTGTPLQNNL~ELWaLLnFllPdiF~~~e~F~swF~~~---~~~~~~e~v~~Lh~vL~pFlLRR~K~dVe~sLppKk 396 (971)
T KOG0385|consen 320 RLLLTGTPLQNNLHELWALLNFLLPDIFNSAEDFDSWFDFT---NCEGDQELVSRLHKVLRPFLLRRIKSDVEKSLPPKK 396 (971)
T ss_pred eeEeeCCcccccHHHHHHHHHhhchhhccCHHHHHHHHccc---ccccCHHHHHHHHhhhhHHHHHHHHHhHhhcCCCcc
Confidence 57788885 2 35677787632 11111 11111 1112222222223344433
Q ss_pred ccccchhh----hHHHHH---HHHHHHHh----hhhhHHHHHHHHHHHhhhcchhhhhhhccccCCCCCcc---------
Q 001817 501 QIDDYGQE----KSWKMQ---KQALALRK----RKSSIASAVEDALEAADFREYSVQTQQSLSCWNPDSIG--------- 560 (1009)
Q Consensus 501 ~i~~~~~~----~~~~~~---~~~~~~~~----~~~~~~~~v~~~l~~~~~~~~~~~~~~~l~~~~~~~i~--------- 560 (1009)
++..|..- ..|... +....... .+..+...+-+ +..+....|-... .....|...+
T Consensus 397 E~~iyvgms~mQkk~Y~~iL~kdl~~~n~~~~~~k~kL~NI~mQ-LRKccnHPYLF~g---~ePg~pyttdehLv~nSGK 472 (971)
T KOG0385|consen 397 ELIIYVGMSSMQKKWYKAILMKDLDALNGEGKGEKTKLQNIMMQ-LRKCCNHPYLFDG---AEPGPPYTTDEHLVTNSGK 472 (971)
T ss_pred eeeEeccchHHHHHHHHHHHHhcchhhcccccchhhHHHHHHHH-HHHhcCCccccCC---CCCCCCCCcchHHHhcCcc
Confidence 33333221 111000 00000000 00011111111 1111111111100 0111111122
Q ss_pred hhhHHHHHHHHHhhcCCCcEEEEcCCHhHHHHHHHHHHcCCCCCCCCCeEEEEecCCCCHHHHHhhcCCCCCC---ceEE
Q 001817 561 FNLIEHVLCHIVKKERPGAVLVFMTGWDDINSLKDQLQAHPLLGDPSRVLLLACHGSMASSEQRLIFDKPEDG---VRKI 637 (1009)
Q Consensus 561 ~~li~~ll~~i~~~~~~g~iLVFl~~~~~i~~l~~~L~~~~~~~~~~~~~v~~lHs~l~~~er~~v~~~f~~G---~~kV 637 (1009)
+-.+..+|..+.. .+.+||||..-.....-+.+++.-. ++...-+.|+++.++|...++.|... +.-.
T Consensus 473 m~vLDkLL~~Lk~--~GhRVLIFSQmt~mLDILeDyc~~R-------~y~ycRiDGSt~~eeR~~aI~~fn~~~s~~FiF 543 (971)
T KOG0385|consen 473 MLVLDKLLPKLKE--QGHRVLIFSQMTRMLDILEDYCMLR-------GYEYCRLDGSTSHEEREDAIEAFNAPPSEKFIF 543 (971)
T ss_pred eehHHHHHHHHHh--CCCeEEEeHHHHHHHHHHHHHHHhc-------CceeEeecCCCCcHHHHHHHHhcCCCCcceEEE
Confidence 2223344444433 4569999975544444444444333 67788899999999999988888643 4456
Q ss_pred EEecCccccccCCCCeeEEEeCCCCccccccCCCCCCcccccccCHHhHHhhhcccCCCCCCcEEEecchhhhh
Q 001817 638 VLATNMAETSITINDVVFVIDCGKAKETSYDALNNTPCLLPSWISKAAARQRRGRAGRVQPGECYHLYPRYVYD 711 (1009)
Q Consensus 638 LVATniae~GIdIp~V~~VId~g~~k~~~yd~~~~~~~l~~~~iS~as~~QR~GRAGR~~~G~c~~Lys~~~~~ 711 (1009)
+++|-...-|||+-..+.||- ||+..|... -.++.+|+-|.|...+=.+|||++....+
T Consensus 544 lLSTRAGGLGINL~aADtVIl--------yDSDWNPQ~-------DLQAmDRaHRIGQ~K~V~V~RLitentVE 602 (971)
T KOG0385|consen 544 LLSTRAGGLGINLTAADTVIL--------YDSDWNPQV-------DLQAMDRAHRIGQKKPVVVYRLITENTVE 602 (971)
T ss_pred EEeccccccccccccccEEEE--------ecCCCCchh-------hhHHHHHHHhhCCcCceEEEEEeccchHH
Confidence 789999999999999999997 777666553 34788899999999999999999976543
No 137
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=99.22 E-value=2.7e-09 Score=127.52 Aligned_cols=116 Identities=27% Similarity=0.355 Sum_probs=81.2
Q ss_pred HHHHHHHhh-cCCCcEEEEcCCHhHHHHHHHHHHcCCCCCCCCCeEEEEecCCCCHHHHHhhcCCCCCCceEEEEecCcc
Q 001817 566 HVLCHIVKK-ERPGAVLVFMTGWDDINSLKDQLQAHPLLGDPSRVLLLACHGSMASSEQRLIFDKPEDGVRKIVLATNMA 644 (1009)
Q Consensus 566 ~ll~~i~~~-~~~g~iLVFl~~~~~i~~l~~~L~~~~~~~~~~~~~v~~lHs~l~~~er~~v~~~f~~G~~kVLVATnia 644 (1009)
.++..+.+. ..+.||||.+.+.+..+.+.+.|.+. ++....+++.-..+|-..|-++-+.| .|.||||+|
T Consensus 415 Aii~ei~~~~~~GrPVLVgt~sI~~SE~ls~~L~~~-------gI~h~vLNAk~~~~EA~IIa~AG~~g--aVTIATNMA 485 (764)
T PRK12326 415 AIVEHIAEVHETGQPVLVGTHDVAESEELAERLRAA-------GVPAVVLNAKNDAEEARIIAEAGKYG--AVTVSTQMA 485 (764)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHhC-------CCcceeeccCchHhHHHHHHhcCCCC--cEEEEecCC
Confidence 344444333 34569999999999999999999986 45555667664444433344444444 588999999
Q ss_pred ccccCCC---------------CeeEEEeCCCCccccccCCCCCCcccccccCHHhHHhhhcccCCCC-CCcEEEecchh
Q 001817 645 ETSITIN---------------DVVFVIDCGKAKETSYDALNNTPCLLPSWISKAAARQRRGRAGRVQ-PGECYHLYPRY 708 (1009)
Q Consensus 645 e~GIdIp---------------~V~~VId~g~~k~~~yd~~~~~~~l~~~~iS~as~~QR~GRAGR~~-~G~c~~Lys~~ 708 (1009)
.+|.||. +=-+||-+.++. |+--=.|-+|||||.| ||.+-.+.|-+
T Consensus 486 GRGTDIkLg~~~~~~~~~V~~~GGLhVIgTerhe------------------SrRID~QLrGRaGRQGDpGss~f~lSle 547 (764)
T PRK12326 486 GRGTDIRLGGSDEADRDRVAELGGLHVIGTGRHR------------------SERLDNQLRGRAGRQGDPGSSVFFVSLE 547 (764)
T ss_pred CCccCeecCCCcccchHHHHHcCCcEEEeccCCc------------------hHHHHHHHhcccccCCCCCceeEEEEcc
Confidence 9999986 124677666665 5555669999999996 68876665543
No 138
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.21 E-value=1.1e-10 Score=141.99 Aligned_cols=321 Identities=17% Similarity=0.186 Sum_probs=196.1
Q ss_pred HcCCeEEEEecCCCchhhhHHHHHHHHHHHHhcCCceEEEechhHHHHHHHHHHHHHHHhCCcccceeee---eeeeccc
Q 001817 311 SENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERGEKLGESVGY---KVRLEGM 387 (1009)
Q Consensus 311 ~~~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~IvvtqPrR~La~qva~rva~e~~~~~g~~vGy---~vr~e~~ 387 (1009)
..|+++++.+|+|||||.++-++++. ....++++++.|.-+.+..+++.+.+.++.-.|..+-- ....+.+
T Consensus 1157 ~~nd~v~vga~~gsgkt~~ae~a~l~------~~~~~~~vyi~p~~~i~~~~~~~w~~~f~~~~G~~~~~l~ge~s~~lk 1230 (1674)
T KOG0951|consen 1157 NTNDNVLVGAPNGSGKTACAELALLR------PDTIGRAVYIAPLEEIADEQYRDWEKKFSKLLGLRIVKLTGETSLDLK 1230 (1674)
T ss_pred cccceEEEecCCCCchhHHHHHHhcC------CccceEEEEecchHHHHHHHHHHHHHhhccccCceEEecCCccccchH
Confidence 46889999999999999888888775 44567899999999999998888877776554443321 1112222
Q ss_pred cCCCcEEEEEccHHHHHHHhcCCCCCCccEEEEeCCCcCCCcch----HHHHHHHHHc-ccCCCCcEEEeccCC-CHHHH
Q 001817 388 KGRDTRLMFCTTGILLRRLLVDRSLRGVTHVIVDEIHERGMNED----FLLIVLKELL-PRRPELRLILMSATL-NAELF 461 (1009)
Q Consensus 388 ~~~~t~Iiv~T~g~Ll~~L~~~~~l~~is~IIIDEaHeR~~~~d----~ll~llk~ll-~~~~~lkvIlmSATl-~~~~~ 461 (1009)
.....+|+++||+..-. ++ ....+++.|.||.|.-|-... .+.. .+.+. ..-.++|++.+|..+ |+.++
T Consensus 1231 l~~~~~vii~tpe~~d~-lq---~iQ~v~l~i~d~lh~igg~~g~v~evi~S-~r~ia~q~~k~ir~v~ls~~lana~d~ 1305 (1674)
T KOG0951|consen 1231 LLQKGQVIISTPEQWDL-LQ---SIQQVDLFIVDELHLIGGVYGAVYEVICS-MRYIASQLEKKIRVVALSSSLANARDL 1305 (1674)
T ss_pred HhhhcceEEechhHHHH-Hh---hhhhcceEeeehhhhhcccCCceEEEEee-HHHHHHHHHhheeEEEeehhhccchhh
Confidence 23567999999998643 32 677889999999996431111 1111 11111 122467899999998 77776
Q ss_pred HhhhCCCCeecc--CCcccceeeEehhhHHHHhhhccCcccccccchhhhHHHHHHHHHHHHhhhhhHHHHHHHHHHHhh
Q 001817 462 SSYFGGAPMLHI--PGFTYPVRAYFLENILEMTRYRLNTYNQIDDYGQEKSWKMQKQALALRKRKSSIASAVEDALEAAD 539 (1009)
Q Consensus 462 ~~yf~~~pvi~i--~g~~~pv~~~yl~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~ 539 (1009)
-++....++.. ..|..|.+++.-.- .+..+ ..... ...+-.+
T Consensus 1306 -ig~s~~~v~Nf~p~~R~~Pl~i~i~~~-------------~~~~~-~~~~~-----------------am~~~~~---- 1349 (1674)
T KOG0951|consen 1306 -IGASSSGVFNFSPSVRPVPLEIHIQSV-------------DISHF-ESRML-----------------AMTKPTY---- 1349 (1674)
T ss_pred -ccccccceeecCcccCCCceeEEEEEe-------------ccchh-HHHHH-----------------HhhhhHH----
Confidence 33333344433 34445554432100 00000 00000 0000000
Q ss_pred hcchhhhhhhccccCCCCCcchhhHHHHHHHHHhhcCCCcEEEEcCCHhHHHHHHHHHHcCCC-----------------
Q 001817 540 FREYSVQTQQSLSCWNPDSIGFNLIEHVLCHIVKKERPGAVLVFMTGWDDINSLKDQLQAHPL----------------- 602 (1009)
Q Consensus 540 ~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~~~~i~~l~~~L~~~~~----------------- 602 (1009)
.++..+. ..+.+.+||+|+++++..++..+-....
T Consensus 1350 -------------------------~ai~~~a---~~~k~~~vf~p~rk~~~~~a~~~~~~s~~~~~~~l~~~~e~~~~~ 1401 (1674)
T KOG0951|consen 1350 -------------------------TAIVRHA---GNRKPAIVFLPTRKHARLVAVDLVTFSHADEPDYLLSELEECDET 1401 (1674)
T ss_pred -------------------------HHHHHHh---cCCCCeEEEeccchhhhhhhhccchhhccCcHHHHHHHHhcchHh
Confidence 0111121 2457899999999999887665543211
Q ss_pred CCCCCCeEEEEecCCCCHHHHHhhcCCCCCCceEEEEecCccccccCCCCeeEEEeCCCCccccccCCCCCCcccccccC
Q 001817 603 LGDPSRVLLLACHGSMASSEQRLIFDKPEDGVRKIVLATNMAETSITINDVVFVIDCGKAKETSYDALNNTPCLLPSWIS 682 (1009)
Q Consensus 603 ~~~~~~~~v~~lHs~l~~~er~~v~~~f~~G~~kVLVATniae~GIdIp~V~~VId~g~~k~~~yd~~~~~~~l~~~~iS 682 (1009)
+....+..|. |-+|+..++..+-..|..|.+.|+|...- -.|+-... ..||-.| +..||...+-.. ..+
T Consensus 1402 l~e~l~~gvg--~e~~s~~d~~iv~~l~e~g~i~v~v~s~~-~~~~~~~~-~lVvvmg---t~~ydg~e~~~~----~y~ 1470 (1674)
T KOG0951|consen 1402 LRESLKHGVG--HEGLSSNDQEIVQQLFEAGAIQVCVMSRD-CYGTKLKA-HLVVVMG---TQYYDGKEHSYE----DYP 1470 (1674)
T ss_pred hhhccccccc--ccccCcchHHHHHHHHhcCcEEEEEEEcc-cccccccc-eEEEEec---ceeecccccccc----cCc
Confidence 1111233444 89999999999999999999999887665 67766543 3333333 344776654332 237
Q ss_pred HHhHHhhhcccCCCCCCcEEEecch---hhhhhhccCCCc
Q 001817 683 KAAARQRRGRAGRVQPGECYHLYPR---YVYDAFADYQLP 719 (1009)
Q Consensus 683 ~as~~QR~GRAGR~~~G~c~~Lys~---~~~~~l~~~~~P 719 (1009)
.++..|+.|+|.| .|+|+.+... ..|..+.....|
T Consensus 1471 i~~ll~m~G~a~~--~~k~vi~~~~~~k~yykkfl~e~lP 1508 (1674)
T KOG0951|consen 1471 IAELLQMVGLASG--AGKCVIMCHTPKKEYYKKFLYEPLP 1508 (1674)
T ss_pred hhHHHHHhhhhcC--CccEEEEecCchHHHHHHhccCcCc
Confidence 7899999999988 7888888643 344555555554
No 139
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=99.18 E-value=2.7e-11 Score=107.34 Aligned_cols=80 Identities=31% Similarity=0.418 Sum_probs=70.9
Q ss_pred HHHHHHcCCCCCCCCCeEEEEecCCCCHHHHHhhcCCCCCCceEEEEecCccccccCCCCeeEEEeCCCCccccccCCCC
Q 001817 593 LKDQLQAHPLLGDPSRVLLLACHGSMASSEQRLIFDKPEDGVRKIVLATNMAETSITINDVVFVIDCGKAKETSYDALNN 672 (1009)
Q Consensus 593 l~~~L~~~~~~~~~~~~~v~~lHs~l~~~er~~v~~~f~~G~~kVLVATniae~GIdIp~V~~VId~g~~k~~~yd~~~~ 672 (1009)
+++.|... ++.+..+||+++.++|..+++.|+.|..+||++|+++++|+|+|+++.||..+.+.
T Consensus 3 l~~~l~~~-------~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gi~~~~~~~vi~~~~~~--------- 66 (82)
T smart00490 3 LAELLKEL-------GIKVARLHGGLSQEEREEILEKFNNGKIKVLVATDVAERGLDLPGVDLVIIYDLPW--------- 66 (82)
T ss_pred HHHHHHHC-------CCeEEEEECCCCHHHHHHHHHHHHcCCCeEEEECChhhCCcChhcCCEEEEeCCCC---------
Confidence 45556554 56799999999999999999999999999999999999999999999999977654
Q ss_pred CCcccccccCHHhHHhhhcccCCCC
Q 001817 673 TPCLLPSWISKAAARQRRGRAGRVQ 697 (1009)
Q Consensus 673 ~~~l~~~~iS~as~~QR~GRAGR~~ 697 (1009)
+...+.|++||+||.+
T Consensus 67 ---------~~~~~~Q~~gR~~R~g 82 (82)
T smart00490 67 ---------SPASYIQRIGRAGRAG 82 (82)
T ss_pred ---------CHHHHHHhhcccccCC
Confidence 8889999999999964
No 140
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=99.13 E-value=1.5e-10 Score=141.66 Aligned_cols=107 Identities=25% Similarity=0.302 Sum_probs=91.6
Q ss_pred CCCcEEEEcCCHhHHHHHHHHHHcCCCCCCCCCeEEEEecCCCCHHHHHhhcCCCCCCceEEEEecCccccccCCC---C
Q 001817 576 RPGAVLVFMTGWDDINSLKDQLQAHPLLGDPSRVLLLACHGSMASSEQRLIFDKPEDGVRKIVLATNMAETSITIN---D 652 (1009)
Q Consensus 576 ~~g~iLVFl~~~~~i~~l~~~L~~~~~~~~~~~~~v~~lHs~l~~~er~~v~~~f~~G~~kVLVATniae~GIdIp---~ 652 (1009)
.+.++||||++++..+.+.+.|... ++....+|+ .+.+|+..+..|+.+...|+||||+|++|+||+ +
T Consensus 597 ~grpVLIft~Sve~sE~Ls~~L~~~-------gI~h~vLna--kq~~REa~Iia~AG~~g~VtIATNMAGRGtDIkl~~~ 667 (1025)
T PRK12900 597 KGQPVLVGTASVEVSETLSRMLRAK-------RIAHNVLNA--KQHDREAEIVAEAGQKGAVTIATNMAGRGTDIKLGEG 667 (1025)
T ss_pred CCCCEEEEeCcHHHHHHHHHHHHHc-------CCCceeecC--CHHHhHHHHHHhcCCCCeEEEeccCcCCCCCcCCccc
Confidence 4579999999999999999999987 666778897 577888889999999999999999999999999 5
Q ss_pred ee-----EEEeCCCCccccccCCCCCCcccccccCHHhHHhhhcccCCCC-CCcEEEecchhh
Q 001817 653 VV-----FVIDCGKAKETSYDALNNTPCLLPSWISKAAARQRRGRAGRVQ-PGECYHLYPRYV 709 (1009)
Q Consensus 653 V~-----~VId~g~~k~~~yd~~~~~~~l~~~~iS~as~~QR~GRAGR~~-~G~c~~Lys~~~ 709 (1009)
|. +||.+.+|. |...+.||+|||||.| ||.+..+++.++
T Consensus 668 V~~vGGL~VIgterhe------------------s~Rid~Ql~GRtGRqGdpGsS~ffvSleD 712 (1025)
T PRK12900 668 VRELGGLFILGSERHE------------------SRRIDRQLRGRAGRQGDPGESVFYVSLED 712 (1025)
T ss_pred hhhhCCceeeCCCCCc------------------hHHHHHHHhhhhhcCCCCcceEEEechhH
Confidence 53 458766665 7778899999999996 699998888654
No 141
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.10 E-value=4.6e-09 Score=134.15 Aligned_cols=135 Identities=17% Similarity=0.179 Sum_probs=87.6
Q ss_pred HHHHHHHHHhhcCCCcEEEEcCCHhHHHHHHHHHHcCCCCCCCCCeEEEEecCCCCHHHHHhhcCCCCCCceEEEEecCc
Q 001817 564 IEHVLCHIVKKERPGAVLVFMTGWDDINSLKDQLQAHPLLGDPSRVLLLACHGSMASSEQRLIFDKPEDGVRKIVLATNM 643 (1009)
Q Consensus 564 i~~ll~~i~~~~~~g~iLVFl~~~~~i~~l~~~L~~~~~~~~~~~~~v~~lHs~l~~~er~~v~~~f~~G~~kVLVATni 643 (1009)
+...+..++.. .+|++|||+++.+..+.+++.|...... .++.+.. . +++...|.++.+.|+.+...||++|+.
T Consensus 740 la~~i~~l~~~-~~g~~LVLFtSy~~l~~v~~~l~~~~~~---~~~~ll~-Q-g~~~~~r~~l~~~F~~~~~~iLlG~~s 813 (928)
T PRK08074 740 VAAYIAKIAKA-TKGRMLVLFTSYEMLKKTYYNLKNEEEL---EGYVLLA-Q-GVSSGSRARLTKQFQQFDKAILLGTSS 813 (928)
T ss_pred HHHHHHHHHHh-CCCCEEEEECCHHHHHHHHHHHhhcccc---cCceEEe-c-CCCCCCHHHHHHHHHhcCCeEEEecCc
Confidence 33444444443 4689999999999999999999764211 1222222 2 333345677888888888899999999
Q ss_pred cccccCCCC--eeEEEeCCCCccccccCC----------CCCCcccc--cccCHHhHHhhhcccCCCCC--CcEEEe
Q 001817 644 AETSITIND--VVFVIDCGKAKETSYDAL----------NNTPCLLP--SWISKAAARQRRGRAGRVQP--GECYHL 704 (1009)
Q Consensus 644 ae~GIdIp~--V~~VId~g~~k~~~yd~~----------~~~~~l~~--~~iS~as~~QR~GRAGR~~~--G~c~~L 704 (1009)
..+|||+|+ +..||-.++|-..--||. .+-..+.. .|.....+.|-+||.=|... |.++.|
T Consensus 814 FwEGVD~pg~~l~~viI~kLPF~~p~dp~~~a~~~~~~~~g~~~F~~~~lP~A~~~lkQg~GRlIRs~~D~G~v~il 890 (928)
T PRK08074 814 FWEGIDIPGDELSCLVIVRLPFAPPDQPVMEAKSEWAKEQGENPFQELSLPQAVLRFKQGFGRLIRTETDRGTVFVL 890 (928)
T ss_pred ccCccccCCCceEEEEEecCCCCCCCCHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHhhhhhhcccCCceEEEEEe
Confidence 999999995 488888898842111110 11111111 12234567899999999854 766655
No 142
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=99.09 E-value=3.3e-09 Score=129.69 Aligned_cols=115 Identities=17% Similarity=0.150 Sum_probs=76.9
Q ss_pred HHHHHHHcCCeEEEEecCCCchhhhHHHHHHHHHHHHhcCCceEEEechhHHHHHHHHHHHHHHHhCCcccceeeeeee-
Q 001817 305 ALLKAISENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERGEKLGESVGYKVR- 383 (1009)
Q Consensus 305 ~il~~l~~~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~IvvtqPrR~La~qva~rva~e~~~~~g~~vGy~vr- 383 (1009)
+++-.+.-++--|....||+|||+++.++++-.++ .|.++.|+ .|+-.||.+-++.+...+. .+|..||.-..
T Consensus 87 QliGg~~Lh~G~iaEM~TGEGKTLvA~l~a~l~al---~G~~Vhvv--T~ndyLA~RD~e~m~~l~~-~lGl~v~~i~~~ 160 (913)
T PRK13103 87 QLIGGMTLHEGKIAEMRTGEGKTLVGTLAVYLNAL---SGKGVHVV--TVNDYLARRDANWMRPLYE-FLGLSVGIVTPF 160 (913)
T ss_pred HHHhhhHhccCccccccCCCCChHHHHHHHHHHHH---cCCCEEEE--eCCHHHHHHHHHHHHHHhc-ccCCEEEEECCC
Confidence 35555555666678999999999998888875543 34444444 4999999999998877653 24555553221
Q ss_pred ---eccccCCCcEEEEEccHHH-HHHHhcCC-------CCCCccEEEEeCCCc
Q 001817 384 ---LEGMKGRDTRLMFCTTGIL-LRRLLVDR-------SLRGVTHVIVDEIHE 425 (1009)
Q Consensus 384 ---~e~~~~~~t~Iiv~T~g~L-l~~L~~~~-------~l~~is~IIIDEaHe 425 (1009)
.+....-.++|+|+|...+ .+.|..+- ...++.++||||+|.
T Consensus 161 ~~~~err~~Y~~dI~YGT~~e~gFDYLrD~~~~~~~~~vqr~l~~aIVDEvDs 213 (913)
T PRK13103 161 QPPEEKRAAYAADITYGTNNEFGFDYLRDNMAFSLDDKFQRELNFAVIDEVDS 213 (913)
T ss_pred CCHHHHHHHhcCCEEEEcccccccchhhccceechhhhcccccceeEechhhh
Confidence 1122223589999999876 22222221 347889999999994
No 143
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=99.04 E-value=1.3e-08 Score=124.11 Aligned_cols=115 Identities=20% Similarity=0.156 Sum_probs=72.6
Q ss_pred HHHHHHHHcCCeEEEEecCCCchhhhHHHHHHHHHHHHhcCCceEEEechhHHHHHHHHHHHHHHHhCCcccceeeeeee
Q 001817 304 DALLKAISENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERGEKLGESVGYKVR 383 (1009)
Q Consensus 304 ~~il~~l~~~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~IvvtqPrR~La~qva~rva~e~~~~~g~~vGy~vr 383 (1009)
-+++-++.-++--|....||.|||+++.++++-..+ .|.++.|+ .++..||..-++.+.... .-+|.+||.-..
T Consensus 80 vQlig~l~L~~G~IaEm~TGEGKTL~a~l~ayl~aL---~G~~VhVv--T~NdyLA~RD~e~m~pvy-~~LGLsvg~i~~ 153 (870)
T CHL00122 80 VQLIGGLVLNDGKIAEMKTGEGKTLVATLPAYLNAL---TGKGVHIV--TVNDYLAKRDQEWMGQIY-RFLGLTVGLIQE 153 (870)
T ss_pred hHhhhhHhhcCCccccccCCCCchHHHHHHHHHHHh---cCCceEEE--eCCHHHHHHHHHHHHHHH-HHcCCceeeeCC
Confidence 346666666777788999999999998888754333 34444444 388899988777654432 223444453221
Q ss_pred ----eccccCCCcEEEEEccHH-----HHHHHhcCC---CCCCccEEEEeCCC
Q 001817 384 ----LEGMKGRDTRLMFCTTGI-----LLRRLLVDR---SLRGVTHVIVDEIH 424 (1009)
Q Consensus 384 ----~e~~~~~~t~Iiv~T~g~-----Ll~~L~~~~---~l~~is~IIIDEaH 424 (1009)
.+....-.++|+|+|..- |-+.+...+ ....+.+.|||||+
T Consensus 154 ~~~~~err~aY~~DItYgTn~e~gFDyLRDnm~~~~~~~v~r~~~faIVDEvD 206 (870)
T CHL00122 154 GMSSEERKKNYLKDITYVTNSELGFDYLRDNMALSLSDVVQRPFNYCIIDEVD 206 (870)
T ss_pred CCChHHHHHhcCCCCEecCCccccccchhhccCcChHHhhccccceeeeecch
Confidence 122223468999999853 333332222 45678899999999
No 144
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]
Probab=98.99 E-value=9.8e-08 Score=112.84 Aligned_cols=125 Identities=18% Similarity=0.219 Sum_probs=95.4
Q ss_pred HHHHHHHHHhhcCCCcEEEEcCCHhHHHHHHHHHHcCCCCCCCCCeEEEEecCCCCHHHHHhhcCCCCCCce-E-EEEec
Q 001817 564 IEHVLCHIVKKERPGAVLVFMTGWDDINSLKDQLQAHPLLGDPSRVLLLACHGSMASSEQRLIFDKPEDGVR-K-IVLAT 641 (1009)
Q Consensus 564 i~~ll~~i~~~~~~g~iLVFl~~~~~i~~l~~~L~~~~~~~~~~~~~v~~lHs~l~~~er~~v~~~f~~G~~-k-VLVAT 641 (1009)
+..++....+ .+.++|+|..++..+.-+...|... .++..+-+.|..+...|..+.+.|.++.. . .|++|
T Consensus 535 l~~ll~~W~k--qg~rvllFsqs~~mLdilE~fL~~~------~~ysylRmDGtT~~~~R~~lVd~Fne~~s~~VFLLTT 606 (923)
T KOG0387|consen 535 LAKLLKDWKK--QGDRVLLFSQSRQMLDILESFLRRA------KGYSYLRMDGTTPAALRQKLVDRFNEDESIFVFLLTT 606 (923)
T ss_pred HHHHHHHHhh--CCCEEEEehhHHHHHHHHHHHHHhc------CCceEEEecCCCccchhhHHHHhhcCCCceEEEEEEe
Confidence 3344444433 3459999999999998888888742 27888899999999999999999997653 3 46799
Q ss_pred CccccccCCCCeeEEEeCCCCccccccCCCCCCcccccccCHHhHHhhhcccCCCCCCcEEEecchhhhh
Q 001817 642 NMAETSITINDVVFVIDCGKAKETSYDALNNTPCLLPSWISKAAARQRRGRAGRVQPGECYHLYPRYVYD 711 (1009)
Q Consensus 642 niae~GIdIp~V~~VId~g~~k~~~yd~~~~~~~l~~~~iS~as~~QR~GRAGR~~~G~c~~Lys~~~~~ 711 (1009)
-+..-|+|+-+.+-||- |||..|.+.- .++.-|+=|-|-...=.+|||.+....+
T Consensus 607 rvGGLGlNLTgAnRVII--------fDPdWNPStD-------~QAreRawRiGQkkdV~VYRL~t~gTIE 661 (923)
T KOG0387|consen 607 RVGGLGLNLTGANRVII--------FDPDWNPSTD-------NQARERAWRIGQKKDVVVYRLMTAGTIE 661 (923)
T ss_pred cccccccccccCceEEE--------ECCCCCCccc-------hHHHHHHHhhcCccceEEEEEecCCcHH
Confidence 99999999999987776 7777766543 3666677777776777899998765543
No 145
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=98.97 E-value=8.4e-08 Score=116.46 Aligned_cols=115 Identities=23% Similarity=0.317 Sum_probs=77.7
Q ss_pred HHHHHHHhh-cCCCcEEEEcCCHhHHHHHHHHHHcCCCCCCCCCeEEEEecCCCCHHHHHhhcCCCCCCceEEEEecCcc
Q 001817 566 HVLCHIVKK-ERPGAVLVFMTGWDDINSLKDQLQAHPLLGDPSRVLLLACHGSMASSEQRLIFDKPEDGVRKIVLATNMA 644 (1009)
Q Consensus 566 ~ll~~i~~~-~~~g~iLVFl~~~~~i~~l~~~L~~~~~~~~~~~~~v~~lHs~l~~~er~~v~~~f~~G~~kVLVATnia 644 (1009)
.++..+.+. ..+.||||.+.+.+..+.+.+.|... ++..-.+++.-...|-..|-++-+. -.|.||||+|
T Consensus 414 Aii~ei~~~~~~gqPVLVgT~SIe~SE~ls~~L~~~-------gi~h~vLNAk~~e~EA~IIa~AG~~--GaVTIATNMA 484 (925)
T PRK12903 414 AVVKEVKRVHKKGQPILIGTAQVEDSETLHELLLEA-------NIPHTVLNAKQNAREAEIIAKAGQK--GAITIATNMA 484 (925)
T ss_pred HHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHC-------CCCceeecccchhhHHHHHHhCCCC--CeEEEecccc
Confidence 344444433 34569999999999999999999986 4444456665333333334333233 4689999999
Q ss_pred ccccCCCC---e-----eEEEeCCCCccccccCCCCCCcccccccCHHhHHhhhcccCCCC-CCcEEEecch
Q 001817 645 ETSITIND---V-----VFVIDCGKAKETSYDALNNTPCLLPSWISKAAARQRRGRAGRVQ-PGECYHLYPR 707 (1009)
Q Consensus 645 e~GIdIp~---V-----~~VId~g~~k~~~yd~~~~~~~l~~~~iS~as~~QR~GRAGR~~-~G~c~~Lys~ 707 (1009)
.+|.||-- | -+||-+.++. |+--=.|-+|||||.| ||.+-.+.|-
T Consensus 485 GRGTDI~Lg~~V~~~GGLhVIgTerhe------------------SrRIDnQLrGRaGRQGDpGss~f~lSL 538 (925)
T PRK12903 485 GRGTDIKLSKEVLELGGLYVLGTDKAE------------------SRRIDNQLRGRSGRQGDVGESRFFISL 538 (925)
T ss_pred cCCcCccCchhHHHcCCcEEEecccCc------------------hHHHHHHHhcccccCCCCCcceEEEec
Confidence 99999962 2 2888776665 3333449999999996 5876555443
No 146
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=98.92 E-value=7.1e-08 Score=116.42 Aligned_cols=321 Identities=18% Similarity=0.186 Sum_probs=169.7
Q ss_pred HcCCeEEEEecCCCchhhhHHHHHHHHHHHHhcCCceEEEechhHHHHHHHHHHHHHHHhCCcccceeeeeeeeccccC-
Q 001817 311 SENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERGEKLGESVGYKVRLEGMKG- 389 (1009)
Q Consensus 311 ~~~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~IvvtqPrR~La~qva~rva~e~~~~~g~~vGy~vr~e~~~~- 389 (1009)
..+.+.+|.+|.|||||+++..++.+.+ .....+++++.-|+.|+.+++.++.... +...+-|....+....
T Consensus 47 ~~~~V~vVRSpMGTGKTtaLi~wLk~~l----~~~~~~VLvVShRrSL~~sL~~rf~~~~---l~gFv~Y~d~~~~~i~~ 119 (824)
T PF02399_consen 47 QKRGVLVVRSPMGTGKTTALIRWLKDAL----KNPDKSVLVVSHRRSLTKSLAERFKKAG---LSGFVNYLDSDDYIIDG 119 (824)
T ss_pred CCCCeEEEECCCCCCcHHHHHHHHHHhc----cCCCCeEEEEEhHHHHHHHHHHHHhhcC---CCcceeeeccccccccc
Confidence 4678999999999999999888776543 2345688888999999999999995421 1122223222111111
Q ss_pred CCcEEEEEccHHHHHHHhcCCCCCCccEEEEeCCCc--CCCc------chHHHHHHHHHcccCCCCcEEEeccCCCHHH-
Q 001817 390 RDTRLMFCTTGILLRRLLVDRSLRGVTHVIVDEIHE--RGMN------EDFLLIVLKELLPRRPELRLILMSATLNAEL- 460 (1009)
Q Consensus 390 ~~t~Iiv~T~g~Ll~~L~~~~~l~~is~IIIDEaHe--R~~~------~d~ll~llk~ll~~~~~lkvIlmSATl~~~~- 460 (1009)
...+-+++..+.|.+.- .+.+.++++|||||+-. +.+. ..-...+++.++...+ ++|+|-||++...
T Consensus 120 ~~~~rLivqIdSL~R~~--~~~l~~yDvVIIDEv~svL~qL~S~Tm~~~~~v~~~L~~lI~~ak--~VI~~DA~ln~~tv 195 (824)
T PF02399_consen 120 RPYDRLIVQIDSLHRLD--GSLLDRYDVVIIDEVMSVLNQLFSPTMRQREEVDNLLKELIRNAK--TVIVMDADLNDQTV 195 (824)
T ss_pred cccCeEEEEehhhhhcc--cccccccCEEEEehHHHHHHHHhHHHHhhHHHHHHHHHHHHHhCC--eEEEecCCCCHHHH
Confidence 12344555555665532 33688899999999962 0011 1223344555555443 6999999997652
Q ss_pred -HHhhhC-CCCeeccCCc----ccceee-EehhhHHHHhhhccCcccccccchhhhHHHHHHHHHHHHhhhhhHHHHHHH
Q 001817 461 -FSSYFG-GAPMLHIPGF----TYPVRA-YFLENILEMTRYRLNTYNQIDDYGQEKSWKMQKQALALRKRKSSIASAVED 533 (1009)
Q Consensus 461 -~~~yf~-~~pvi~i~g~----~~pv~~-~yl~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 533 (1009)
|-+.+. +.++-.|.+. .|.-.. .++... +.+ .+..
T Consensus 196 dFl~~~Rp~~~i~vI~n~y~~~~fs~R~~~~~~~l-----------------~~~---------------------~l~~ 237 (824)
T PF02399_consen 196 DFLASCRPDENIHVIVNTYASPGFSNRRCTFLRSL-----------------GTD---------------------TLAA 237 (824)
T ss_pred HHHHHhCCCCcEEEEEeeeecCCcccceEEEeccc-----------------CcH---------------------HHHH
Confidence 223333 3333222211 111111 111110 000 0000
Q ss_pred HHHHhh-hcchhhh---hhhccccCCCCCcchhhHHHHHHHHHhhcCCCcEEEEcCCHhHHHHHHHHHHcCCCCCCCCCe
Q 001817 534 ALEAAD-FREYSVQ---TQQSLSCWNPDSIGFNLIEHVLCHIVKKERPGAVLVFMTGWDDINSLKDQLQAHPLLGDPSRV 609 (1009)
Q Consensus 534 ~l~~~~-~~~~~~~---~~~~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~~~~i~~l~~~L~~~~~~~~~~~~ 609 (1009)
.+...+ ...-... ....................++..+ ..+.+|-||+.+....+.+++..... ..
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tF~~~L~~~L---~~gknIcvfsSt~~~~~~v~~~~~~~-------~~ 307 (824)
T PF02399_consen 238 ALNPEDENADTSPTPKHSPDPTATAAISNDETTFFSELLARL---NAGKNICVFSSTVSFAEIVARFCARF-------TK 307 (824)
T ss_pred HhCCcccccccCCCcCCCCccccccccccchhhHHHHHHHHH---hCCCcEEEEeChHHHHHHHHHHHHhc-------CC
Confidence 000000 0000000 0000000000000001112222222 23457888999988888888887765 44
Q ss_pred EEEEecCCCCHHHHHhhcCCCCCCceEEEEecCccccccCCCCeeEEEeCCCCccccccCCCCCCcccccccCHHhHHhh
Q 001817 610 LLLACHGSMASSEQRLIFDKPEDGVRKIVLATNMAETSITINDVVFVIDCGKAKETSYDALNNTPCLLPSWISKAAARQR 689 (1009)
Q Consensus 610 ~v~~lHs~l~~~er~~v~~~f~~G~~kVLVATniae~GIdIp~V~~VId~g~~k~~~yd~~~~~~~l~~~~iS~as~~QR 689 (1009)
.|+.+.|.-+.. .+. . =++.+|++=|++...|+++.+..+=--++..|...+ . -+..+..|+
T Consensus 308 ~Vl~l~s~~~~~---dv~-~--W~~~~VviYT~~itvG~Sf~~~HF~~~f~yvk~~~~-----g-------pd~~s~~Q~ 369 (824)
T PF02399_consen 308 KVLVLNSTDKLE---DVE-S--WKKYDVVIYTPVITVGLSFEEKHFDSMFAYVKPMSY-----G-------PDMVSVYQM 369 (824)
T ss_pred eEEEEcCCCCcc---ccc-c--ccceeEEEEeceEEEEeccchhhceEEEEEecCCCC-----C-------CcHHHHHHH
Confidence 577777765544 232 1 356899999999999999975532211122221111 1 144568899
Q ss_pred hcccCCCCCCcEEEecchh
Q 001817 690 RGRAGRVQPGECYHLYPRY 708 (1009)
Q Consensus 690 ~GRAGR~~~G~c~~Lys~~ 708 (1009)
.||+-.......|..+...
T Consensus 370 lgRvR~l~~~ei~v~~d~~ 388 (824)
T PF02399_consen 370 LGRVRSLLDNEIYVYIDAS 388 (824)
T ss_pred HHHHHhhccCeEEEEEecc
Confidence 9999766777777666543
No 147
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=98.90 E-value=6.5e-08 Score=118.78 Aligned_cols=115 Identities=19% Similarity=0.175 Sum_probs=87.7
Q ss_pred CCCcEEEEcCCHhHHHHHHHHHHcCCCCCCCCCeEEEEecCCCCHHHHHhhcCCCCC---CceEEEEecCccccccCCCC
Q 001817 576 RPGAVLVFMTGWDDINSLKDQLQAHPLLGDPSRVLLLACHGSMASSEQRLIFDKPED---GVRKIVLATNMAETSITIND 652 (1009)
Q Consensus 576 ~~g~iLVFl~~~~~i~~l~~~L~~~~~~~~~~~~~v~~lHs~l~~~er~~v~~~f~~---G~~kVLVATniae~GIdIp~ 652 (1009)
.+.+||||-.-.....-|+++|... ++..--+.|++..+-|+..++.|.. ...-.|+||-...-|||+-.
T Consensus 698 ~GHrVLIFSQMVRmLDIL~eYL~~r-------~ypfQRLDGsvrgelRq~AIDhFnap~SddFvFLLSTRAGGLGINLat 770 (1373)
T KOG0384|consen 698 GGHRVLIFSQMVRMLDILAEYLSLR-------GYPFQRLDGSVRGELRQQAIDHFNAPDSDDFVFLLSTRAGGLGINLAT 770 (1373)
T ss_pred CCceEEEhHHHHHHHHHHHHHHHHc-------CCcceeccCCcchHHHHHHHHhccCCCCCceEEEEecccCcccccccc
Confidence 3469999999889999999999876 5666678999999999999888863 45678999999999999998
Q ss_pred eeEEEeCCCCccccccCCCCCCcccccccCHHhHHhhhcccCCCCCCcEEEecchhhhhh
Q 001817 653 VVFVIDCGKAKETSYDALNNTPCLLPSWISKAAARQRRGRAGRVQPGECYHLYPRYVYDA 712 (1009)
Q Consensus 653 V~~VId~g~~k~~~yd~~~~~~~l~~~~iS~as~~QR~GRAGR~~~G~c~~Lys~~~~~~ 712 (1009)
.+.||. ||+..|...-+ ++.=|+-|.|-...=.+|||.|+..|+.
T Consensus 771 ADTVII--------FDSDWNPQNDL-------QAqARaHRIGQkk~VnVYRLVTk~TvEe 815 (1373)
T KOG0384|consen 771 ADTVII--------FDSDWNPQNDL-------QAQARAHRIGQKKHVNVYRLVTKNTVEE 815 (1373)
T ss_pred cceEEE--------eCCCCCcchHH-------HHHHHHHhhcccceEEEEEEecCCchHH
Confidence 877776 66666544332 3333444444444467899999988864
No 148
>PRK14873 primosome assembly protein PriA; Provisional
Probab=98.88 E-value=2e-08 Score=122.72 Aligned_cols=132 Identities=11% Similarity=0.036 Sum_probs=84.3
Q ss_pred cCCCchhhhHHHHHHHHHHHHhcCCceEEEechhHHHHHHHHHHHHHHHhC-Ccccceeee---eee---eccccCCCcE
Q 001817 321 ETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERG-EKLGESVGY---KVR---LEGMKGRDTR 393 (1009)
Q Consensus 321 pTGSGKTt~~~~~ile~~~~~~~~~~~~IvvtqPrR~La~qva~rva~e~~-~~~g~~vGy---~vr---~e~~~~~~t~ 393 (1009)
-+|||||..+...+-+.+ . .|+ .+++++|...++.|+.+++...+| ..+....+. ..| +........+
T Consensus 168 ~~GSGKTevyl~~i~~~l-~--~Gk--~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~w~~~~~G~~~ 242 (665)
T PRK14873 168 LPGEDWARRLAAAAAATL-R--AGR--GALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPADRYRRWLAVLRGQAR 242 (665)
T ss_pred CCCCcHHHHHHHHHHHHH-H--cCC--eEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHHHhCCCCc
Confidence 359999988887776544 2 233 456666999999999999999887 433222111 111 1122335678
Q ss_pred EEEEccHHHHHHHhcCCCCCCccEEEEeCCCcCCCcch----HHHHHHHHHcccCCCCcEEEeccCCCHHHHHh
Q 001817 394 LMFCTTGILLRRLLVDRSLRGVTHVIVDEIHERGMNED----FLLIVLKELLPRRPELRLILMSATLNAELFSS 463 (1009)
Q Consensus 394 Iiv~T~g~Ll~~L~~~~~l~~is~IIIDEaHeR~~~~d----~ll~llk~ll~~~~~lkvIlmSATl~~~~~~~ 463 (1009)
|+|+|-..++- .+.++++|||||-|+-+...+ +-.--+..+.....+..+|+.|||+..+.+..
T Consensus 243 IViGtRSAvFa------P~~~LgLIIvdEEhd~sykq~~~p~yhaRdvA~~Ra~~~~~~lvLgSaTPSles~~~ 310 (665)
T PRK14873 243 VVVGTRSAVFA------PVEDLGLVAIWDDGDDLLAEPRAPYPHAREVALLRAHQHGCALLIGGHARTAEAQAL 310 (665)
T ss_pred EEEEcceeEEe------ccCCCCEEEEEcCCchhhcCCCCCCccHHHHHHHHHHHcCCcEEEECCCCCHHHHHH
Confidence 99999765542 688999999999995332222 00000111222335778999999998887654
No 149
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=98.81 E-value=8.6e-07 Score=107.56 Aligned_cols=104 Identities=17% Similarity=0.170 Sum_probs=75.1
Q ss_pred EEcCCHhHHHHHHHHHHcCCCCCCCCCeEEEEecCCCCHHHHHhhcCCCCCC--ceE-EEEecCccccccCCCCeeEEEe
Q 001817 582 VFMTGWDDINSLKDQLQAHPLLGDPSRVLLLACHGSMASSEQRLIFDKPEDG--VRK-IVLATNMAETSITINDVVFVID 658 (1009)
Q Consensus 582 VFl~~~~~i~~l~~~L~~~~~~~~~~~~~v~~lHs~l~~~er~~v~~~f~~G--~~k-VLVATniae~GIdIp~V~~VId 658 (1009)
|.+.......++.+.+... .++.++.+||.|+..+|+.+.+.|.+. .-+ .++||-..+.||++-+..-||-
T Consensus 599 v~Isny~~tldl~e~~~~~------~g~~~~rLdG~~~~~qRq~~vd~FN~p~~~~~vfLlSsKAgg~GinLiGAsRlil 672 (776)
T KOG0390|consen 599 VLISNYTQTLDLFEQLCRW------RGYEVLRLDGKTSIKQRQKLVDTFNDPESPSFVFLLSSKAGGEGLNLIGASRLIL 672 (776)
T ss_pred EEeccHHHHHHHHHHHHhh------cCceEEEEcCCCchHHHHHHHHhccCCCCCceEEEEecccccCceeecccceEEE
Confidence 3445555666666666554 277899999999999999999999642 324 4568888999999999988887
Q ss_pred CCCCccccccCCCCCCcccccccCHHhHHhhhcccCCCCC---CcEEEecchhh
Q 001817 659 CGKAKETSYDALNNTPCLLPSWISKAAARQRRGRAGRVQP---GECYHLYPRYV 709 (1009)
Q Consensus 659 ~g~~k~~~yd~~~~~~~l~~~~iS~as~~QR~GRAGR~~~---G~c~~Lys~~~ 709 (1009)
||+..|.. .=.|-++||=|.|+ -..|+|.+...
T Consensus 673 --------~D~dWNPa----------~d~QAmaR~~RdGQKk~v~iYrLlatGt 708 (776)
T KOG0390|consen 673 --------FDPDWNPA----------VDQQAMARAWRDGQKKPVYIYRLLATGT 708 (776)
T ss_pred --------eCCCCCch----------hHHHHHHHhccCCCcceEEEEEeecCCC
Confidence 66666543 33477888877754 56688877544
No 150
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=98.80 E-value=5.2e-07 Score=110.13 Aligned_cols=117 Identities=16% Similarity=0.113 Sum_probs=74.0
Q ss_pred HHHHHHHHcCCeEEEEecCCCchhhhHHHHHHHHHHHHhcCCceEEEechhHHHHHHHHHHHHHH---HhCCcccceeee
Q 001817 304 DALLKAISENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAA---ERGEKLGESVGY 380 (1009)
Q Consensus 304 ~~il~~l~~~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~IvvtqPrR~La~qva~rva~---e~~~~~g~~vGy 380 (1009)
-+++-++.-++--|....||-|||+++.++++-..+ .|.++.||- +..-||..=++.+.. .+|..+|...+-
T Consensus 89 VQliGgl~Lh~G~IAEM~TGEGKTL~atlpaylnAL---~GkgVhVVT--vNdYLA~RDae~m~~vy~~LGLtvg~i~~~ 163 (939)
T PRK12902 89 VQLIGGMVLHEGQIAEMKTGEGKTLVATLPSYLNAL---TGKGVHVVT--VNDYLARRDAEWMGQVHRFLGLSVGLIQQD 163 (939)
T ss_pred hHHHhhhhhcCCceeeecCCCChhHHHHHHHHHHhh---cCCCeEEEe--CCHHHHHhHHHHHHHHHHHhCCeEEEECCC
Confidence 346666666666788999999999999888776554 344444433 677777766665543 334444432221
Q ss_pred eeeeccccCCCcEEEEEccHHH-----HHHHhcCC---CCCCccEEEEeCCCc
Q 001817 381 KVRLEGMKGRDTRLMFCTTGIL-----LRRLLVDR---SLRGVTHVIVDEIHE 425 (1009)
Q Consensus 381 ~vr~e~~~~~~t~Iiv~T~g~L-----l~~L~~~~---~l~~is~IIIDEaHe 425 (1009)
....+....-.++|+|+|+.-| .+.+..+. ....+.+.|||||+.
T Consensus 164 ~~~~err~aY~~DItYgTn~e~gFDYLRDnm~~~~~~~vqR~~~faIVDEvDS 216 (939)
T PRK12902 164 MSPEERKKNYACDITYATNSELGFDYLRDNMATDISEVVQRPFNYCVIDEVDS 216 (939)
T ss_pred CChHHHHHhcCCCeEEecCCcccccchhhhhcccccccccCccceEEEecccc
Confidence 1112223335689999999765 44444322 567888999999993
No 151
>COG4889 Predicted helicase [General function prediction only]
Probab=98.78 E-value=1.3e-07 Score=112.00 Aligned_cols=77 Identities=21% Similarity=0.238 Sum_probs=61.1
Q ss_pred CeEEEEecCCCCHHHHHhhcC---CCCCCceEEEEecCccccccCCCCeeEEEeCCCCccccccCCCCCCcccccccCHH
Q 001817 608 RVLLLACHGSMASSEQRLIFD---KPEDGVRKIVLATNMAETSITINDVVFVIDCGKAKETSYDALNNTPCLLPSWISKA 684 (1009)
Q Consensus 608 ~~~v~~lHs~l~~~er~~v~~---~f~~G~~kVLVATniae~GIdIp~V~~VId~g~~k~~~yd~~~~~~~l~~~~iS~a 684 (1009)
.+.+-...|.|+..+|...+. .|.+..+|||-.--.+.+|||+|..+-||- ||+.. |..
T Consensus 499 ~iSi~HvDGtmNal~R~~l~~l~~~~~~neckIlSNaRcLSEGVDVPaLDsViF--------f~pr~----------smV 560 (1518)
T COG4889 499 KISIDHVDGTMNALERLDLLELKNTFEPNECKILSNARCLSEGVDVPALDSVIF--------FDPRS----------SMV 560 (1518)
T ss_pred eEEeecccccccHHHHHHHHhccCCCCcchheeeccchhhhcCCCccccceEEE--------ecCch----------hHH
Confidence 445555668899888865433 567889999999999999999999999997 56655 555
Q ss_pred hHHhhhcccCCCCCCcEE
Q 001817 685 AARQRRGRAGRVQPGECY 702 (1009)
Q Consensus 685 s~~QR~GRAGR~~~G~c~ 702 (1009)
..+|-.||..|..+|+-|
T Consensus 561 DIVQaVGRVMRKa~gK~y 578 (1518)
T COG4889 561 DIVQAVGRVMRKAKGKKY 578 (1518)
T ss_pred HHHHHHHHHHHhCcCCcc
Confidence 677999999999887654
No 152
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=98.67 E-value=4.7e-07 Score=111.04 Aligned_cols=112 Identities=16% Similarity=0.269 Sum_probs=82.4
Q ss_pred CcEEEEcCCHhHHHHHHHHHHcCCCCCCCCCeEEEEecCCCCHHHHHhhcCCCCCC-ceEEE-EecCccccccCCCCeeE
Q 001817 578 GAVLVFMTGWDDINSLKDQLQAHPLLGDPSRVLLLACHGSMASSEQRLIFDKPEDG-VRKIV-LATNMAETSITINDVVF 655 (1009)
Q Consensus 578 g~iLVFl~~~~~i~~l~~~L~~~~~~~~~~~~~v~~lHs~l~~~er~~v~~~f~~G-~~kVL-VATniae~GIdIp~V~~ 655 (1009)
.++||||.=+..+.-+.+-|.+.. .+.+.-+-+.|+.++.+|.++.++|.++ .+.|| ++|-+..-|+|+-+.+.
T Consensus 1341 HRiLIFcQlK~mlDlVekDL~k~~----mpsVtymRLDGSVpp~~R~kiV~~FN~DptIDvLlLTThVGGLGLNLTGADT 1416 (1549)
T KOG0392|consen 1341 HRILIFCQLKSMLDLVEKDLFKKY----MPSVTYMRLDGSVPPGDRQKIVERFNEDPTIDVLLLTTHVGGLGLNLTGADT 1416 (1549)
T ss_pred ceeEEeeeHHHHHHHHHHHHhhhh----cCceeEEEecCCCCcHHHHHHHHHhcCCCceeEEEEeeeccccccccCCCce
Confidence 489999999888887777665431 2345566889999999999999999988 68876 58899999999999999
Q ss_pred EEeCCCCccccccCCCCCCcccccccCHHhHHhhhcccCCCCC---CcEEEecchhhhh
Q 001817 656 VIDCGKAKETSYDALNNTPCLLPSWISKAAARQRRGRAGRVQP---GECYHLYPRYVYD 711 (1009)
Q Consensus 656 VId~g~~k~~~yd~~~~~~~l~~~~iS~as~~QR~GRAGR~~~---G~c~~Lys~~~~~ 711 (1009)
||-. +-.|+|-+. .|-.-||-|.|. =.+|||+++...+
T Consensus 1417 VVFv----EHDWNPMrD--------------LQAMDRAHRIGQKrvVNVyRlItrGTLE 1457 (1549)
T KOG0392|consen 1417 VVFV----EHDWNPMRD--------------LQAMDRAHRIGQKRVVNVYRLITRGTLE 1457 (1549)
T ss_pred EEEE----ecCCCchhh--------------HHHHHHHHhhcCceeeeeeeehhcccHH
Confidence 9862 222444333 255555555544 5678998876543
No 153
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=98.66 E-value=1.8e-06 Score=107.38 Aligned_cols=130 Identities=15% Similarity=0.206 Sum_probs=82.4
Q ss_pred hHHHHHHHHHhhcCCCcEEEEcCCHhHHHHHHHHHHcCCCCCCCCCeEEEEecCCCCHHHHHhhcCCC----CCCceEEE
Q 001817 563 LIEHVLCHIVKKERPGAVLVFMTGWDDINSLKDQLQAHPLLGDPSRVLLLACHGSMASSEQRLIFDKP----EDGVRKIV 638 (1009)
Q Consensus 563 li~~ll~~i~~~~~~g~iLVFl~~~~~i~~l~~~L~~~~~~~~~~~~~v~~lHs~l~~~er~~v~~~f----~~G~~kVL 638 (1009)
.+...+..++. ..|.+|||+++.+..+.+++.|... . +..+ ..+|.. .+..+++.| ..|...||
T Consensus 522 ~~~~~i~~l~~--~~gg~LVlFtSy~~l~~v~~~l~~~--~----~~~l-l~Q~~~---~~~~ll~~f~~~~~~~~~~VL 589 (697)
T PRK11747 522 EMAEFLPELLE--KHKGSLVLFASRRQMQKVADLLPRD--L----RLML-LVQGDQ---PRQRLLEKHKKRVDEGEGSVL 589 (697)
T ss_pred HHHHHHHHHHh--cCCCEEEEeCcHHHHHHHHHHHHHh--c----CCcE-EEeCCc---hHHHHHHHHHHHhccCCCeEE
Confidence 34445556666 3455899999999999999998753 1 1223 235543 344555444 45777899
Q ss_pred EecCccccccCCCC--eeEEEeCCCCccccccCC----------CCCCcccc--cccCHHhHHhhhcccCCCCC--CcEE
Q 001817 639 LATNMAETSITIND--VVFVIDCGKAKETSYDAL----------NNTPCLLP--SWISKAAARQRRGRAGRVQP--GECY 702 (1009)
Q Consensus 639 VATniae~GIdIp~--V~~VId~g~~k~~~yd~~----------~~~~~l~~--~~iS~as~~QR~GRAGR~~~--G~c~ 702 (1009)
++|....+|||+|+ ++.||-.++|-..--|+. .+-..+.. .+-....+.|-+||.=|... |..+
T Consensus 590 ~g~~sf~EGVD~pGd~l~~vII~kLPF~~p~dp~~~ar~~~~~~~g~~~F~~~~lP~A~~kl~Qg~GRlIRs~~D~G~i~ 669 (697)
T PRK11747 590 FGLQSFAEGLDLPGDYLTQVIITKIPFAVPDSPVEATLAEWLKSRGGNPFMEISVPDASFKLIQAVGRLIRSEQDRGRVT 669 (697)
T ss_pred EEeccccccccCCCCceEEEEEEcCCCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhccccccCCceEEEE
Confidence 99999999999995 689999998843111111 01111110 11123347899999999854 7766
Q ss_pred Ee
Q 001817 703 HL 704 (1009)
Q Consensus 703 ~L 704 (1009)
.|
T Consensus 670 il 671 (697)
T PRK11747 670 IL 671 (697)
T ss_pred EE
Confidence 65
No 154
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=98.62 E-value=1.7e-06 Score=107.70 Aligned_cols=147 Identities=18% Similarity=0.158 Sum_probs=92.5
Q ss_pred HHHHHHHhhcCCCcEEEEcCCHhHHHHHHHHHHcCCCCCCCCCeEEEEecCCCCHHHHHhhcCCCCCCce-EEEEecCcc
Q 001817 566 HVLCHIVKKERPGAVLVFMTGWDDINSLKDQLQAHPLLGDPSRVLLLACHGSMASSEQRLIFDKPEDGVR-KIVLATNMA 644 (1009)
Q Consensus 566 ~ll~~i~~~~~~g~iLVFl~~~~~i~~l~~~L~~~~~~~~~~~~~v~~lHs~l~~~er~~v~~~f~~G~~-kVLVATnia 644 (1009)
..+..+.... +|++|||+|+.+..+.+++.+...... .....+|..+.. ..++.|+.+.- -++|+|..+
T Consensus 469 ~~i~~~~~~~-~~~~lvlF~Sy~~l~~~~~~~~~~~~~------~~v~~q~~~~~~---~~l~~f~~~~~~~~lv~~gsf 538 (654)
T COG1199 469 AYLREILKAS-PGGVLVLFPSYEYLKRVAERLKDERST------LPVLTQGEDERE---ELLEKFKASGEGLILVGGGSF 538 (654)
T ss_pred HHHHHHHhhc-CCCEEEEeccHHHHHHHHHHHhhcCcc------ceeeecCCCcHH---HHHHHHHHhcCCeEEEeeccc
Confidence 3444554443 568999999999999999999875211 234556665554 44455544333 899999999
Q ss_pred ccccCCCCe--eEEEeCCCCccccccC----------CCC--CCcccccccCHHhHHhhhcccCCCCC--CcEEEe---c
Q 001817 645 ETSITINDV--VFVIDCGKAKETSYDA----------LNN--TPCLLPSWISKAAARQRRGRAGRVQP--GECYHL---Y 705 (1009)
Q Consensus 645 e~GIdIp~V--~~VId~g~~k~~~yd~----------~~~--~~~l~~~~iS~as~~QR~GRAGR~~~--G~c~~L---y 705 (1009)
.+|||+|+= ..||-.|+|-...-|+ ..+ ...+...+.......|-+||+=|... |.++.| |
T Consensus 539 ~EGVD~~g~~l~~vvI~~lPfp~p~dp~~~~r~~~~~~~g~~~f~~~~l~~A~~~l~QavGRlIR~~~D~G~ivllD~R~ 618 (654)
T COG1199 539 WEGVDFPGDALRLVVIVGLPFPNPDDPLLKARLEFLKRLGGDPFEEFYLPPAVIKLRQAVGRLIRSEDDRGVIVLLDKRY 618 (654)
T ss_pred cCcccCCCCCeeEEEEEecCCCCCCCHHHHHHHHHHHHhcCCCceEeehHHHHHHHHHhhccccccCCCceEEEEecccc
Confidence 999999954 7788888885422222 121 11122233445567899999999743 777777 4
Q ss_pred chhhhhh-hccCCCcccc
Q 001817 706 PRYVYDA-FADYQLPELL 722 (1009)
Q Consensus 706 s~~~~~~-l~~~~~PEi~ 722 (1009)
....|.. +.+.-.+.+.
T Consensus 619 ~~~~y~~~l~~~l~~~~~ 636 (654)
T COG1199 619 ATKRYGKLLLDSLPPFPK 636 (654)
T ss_pred hhhhHHHHHHHhCCCCcc
Confidence 4444543 4444433333
No 155
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.61 E-value=5.7e-07 Score=112.43 Aligned_cols=136 Identities=16% Similarity=0.211 Sum_probs=83.0
Q ss_pred HHHHHHHHHhhcCCCcEEEEcCCHhHHHHHHHHHHcCCCCC---CCCCeEEEEecCCCCHHHHHhhcCCCCC----CceE
Q 001817 564 IEHVLCHIVKKERPGAVLVFMTGWDDINSLKDQLQAHPLLG---DPSRVLLLACHGSMASSEQRLIFDKPED----GVRK 636 (1009)
Q Consensus 564 i~~ll~~i~~~~~~g~iLVFl~~~~~i~~l~~~L~~~~~~~---~~~~~~v~~lHs~l~~~er~~v~~~f~~----G~~k 636 (1009)
+...+..+++.. +|.+|||+|+....+.+.+.+....... ....+.+-. . + ..++..+++.|+. |.-.
T Consensus 510 l~~~i~~~~~~~-pgg~lvfFpSy~~l~~v~~~~~~~~~~~~i~~~k~i~~E~-~-~--~~~~~~~l~~f~~~~~~~~ga 584 (705)
T TIGR00604 510 LGELLVEFSKII-PDGIVVFFPSYSYLENIVSTWKEMGILENIEKKKLIFVET-K-D--AQETSDALERYKQAVSEGRGA 584 (705)
T ss_pred HHHHHHHHhhcC-CCcEEEEccCHHHHHHHHHHHHhcCHHHHHhcCCCEEEeC-C-C--cchHHHHHHHHHHHHhcCCce
Confidence 444555655544 5889999999999999998887532110 001111211 1 1 1456777777743 4556
Q ss_pred EEEec--CccccccCCCC--eeEEEeCCCCccccccCCC-------------CCCcccccccCHHhHHhhhcccCCCCC-
Q 001817 637 IVLAT--NMAETSITIND--VVFVIDCGKAKETSYDALN-------------NTPCLLPSWISKAAARQRRGRAGRVQP- 698 (1009)
Q Consensus 637 VLVAT--niae~GIdIp~--V~~VId~g~~k~~~yd~~~-------------~~~~l~~~~iS~as~~QR~GRAGR~~~- 698 (1009)
|++|+ ..+.+|||+++ .+.||-.|+|-....|+.. +.......+-......|-+||+=|...
T Consensus 585 vL~av~gGk~sEGIDf~~~~~r~ViivGlPf~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~a~~~v~QaiGR~IR~~~D 664 (705)
T TIGR00604 585 VLLSVAGGKVSEGIDFCDDLGRAVIMVGIPYEYTESRILLARLEFLRDQYPIRENQDFYEFDAMRAVNQAIGRVIRHKDD 664 (705)
T ss_pred EEEEecCCcccCccccCCCCCcEEEEEccCCCCCCCHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHhCccccCcCc
Confidence 99999 89999999996 5888889999632222110 001011111223456799999999965
Q ss_pred -CcEEEe
Q 001817 699 -GECYHL 704 (1009)
Q Consensus 699 -G~c~~L 704 (1009)
|..+.+
T Consensus 665 ~G~iill 671 (705)
T TIGR00604 665 YGSIVLL 671 (705)
T ss_pred eEEEEEE
Confidence 554444
No 156
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=98.42 E-value=1.4e-06 Score=105.48 Aligned_cols=62 Identities=16% Similarity=0.140 Sum_probs=51.0
Q ss_pred HHHHHHHHcCCeEEEEecCCCchhhhHHHHHHHHHHHHhcCCceEEEechhHHHHHHHHHHHHHH
Q 001817 304 DALLKAISENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAA 368 (1009)
Q Consensus 304 ~~il~~l~~~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~IvvtqPrR~La~qva~rva~ 368 (1009)
+.|.+++.+++.+++.|+||+|||.+++.+++..+.. ..+.+|+|+.||++|+.|+.+.+..
T Consensus 7 ~~i~~al~~~~~lliEA~TGtGKTlAYLlpal~~~~~---~~~~rvlIstpT~~Lq~Ql~~~l~~ 68 (636)
T TIGR03117 7 LNCLTSLRQKRIGMLEASTGVGKTLAMIMAALTMLKE---RPDQKIAIAVPTLALMGQLWSELER 68 (636)
T ss_pred HHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHHHHHh---ccCceEEEECCcHHHHHHHHHHHHH
Confidence 5677788889999999999999999999999876542 1246788888999999999975543
No 157
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]
Probab=98.28 E-value=0.00013 Score=82.91 Aligned_cols=82 Identities=17% Similarity=0.218 Sum_probs=67.4
Q ss_pred cCCCcEEEEcCCHhHHHHHHHHHHcCCCCCCCCCeEEEEecCCCCHHHHHhhcCCCCCC-ceEE-EEecCccccccCCCC
Q 001817 575 ERPGAVLVFMTGWDDINSLKDQLQAHPLLGDPSRVLLLACHGSMASSEQRLIFDKPEDG-VRKI-VLATNMAETSITIND 652 (1009)
Q Consensus 575 ~~~g~iLVFl~~~~~i~~l~~~L~~~~~~~~~~~~~v~~lHs~l~~~er~~v~~~f~~G-~~kV-LVATniae~GIdIp~ 652 (1009)
.++.+.+||+.-..-.+.+...+.+. ++...-+.|..++.+|....+.|... +.+| |++-..+..|+|+..
T Consensus 490 ~~~~KflVFaHH~~vLd~Iq~~~~~r-------~vg~IRIDGst~s~~R~ll~qsFQ~seev~VAvlsItA~gvGLt~tA 562 (689)
T KOG1000|consen 490 APPRKFLVFAHHQIVLDTIQVEVNKR-------KVGSIRIDGSTPSHRRTLLCQSFQTSEEVRVAVLSITAAGVGLTLTA 562 (689)
T ss_pred CCCceEEEEehhHHHHHHHHHHHHHc-------CCCeEEecCCCCchhHHHHHHHhccccceEEEEEEEeecccceeeec
Confidence 34569999999998888888888876 56677789999999999999998754 3444 678888999999999
Q ss_pred eeEEEeCCCCc
Q 001817 653 VVFVIDCGKAK 663 (1009)
Q Consensus 653 V~~VId~g~~k 663 (1009)
...||-.-++.
T Consensus 563 a~~VVFaEL~w 573 (689)
T KOG1000|consen 563 ASVVVFAELHW 573 (689)
T ss_pred cceEEEEEecC
Confidence 99999866664
No 158
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=98.23 E-value=5.1e-05 Score=97.13 Aligned_cols=135 Identities=18% Similarity=0.142 Sum_probs=83.2
Q ss_pred CeEEEEecCCCchhhhHHHHHHHHHHHHhcCCceEEEechhHHHHHHHHHHHHHHHhCCcccc-eeeeeeee-ccccCCC
Q 001817 314 QVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERGEKLGE-SVGYKVRL-EGMKGRD 391 (1009)
Q Consensus 314 ~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~IvvtqPrR~La~qva~rva~e~~~~~g~-~vGy~vr~-e~~~~~~ 391 (1009)
+..+|.=-||||||.... ++...+... .....|++++-|+.|-.|+.+.+...-....-. ...-.-.. +......
T Consensus 274 ~~G~IWHtqGSGKTlTm~-~~A~~l~~~--~~~~~v~fvvDR~dLd~Q~~~~f~~~~~~~~~~~~~~s~~~Lk~~l~~~~ 350 (962)
T COG0610 274 KGGYIWHTQGSGKTLTMF-KLARLLLEL--PKNPKVLFVVDRKDLDDQTSDEFQSFGKVAFNDPKAESTSELKELLEDGK 350 (962)
T ss_pred CceEEEeecCCchHHHHH-HHHHHHHhc--cCCCeEEEEechHHHHHHHHHHHHHHHHhhhhcccccCHHHHHHHHhcCC
Confidence 458999999999995443 444444433 456788888899999999999886543211110 00000000 0011124
Q ss_pred cEEEEEccHHHHHHHhcCC---CCCCccEEEEeCCCcCCCcchHHHHHHHHHcccCCCCcEEEeccCC
Q 001817 392 TRLMFCTTGILLRRLLVDR---SLRGVTHVIVDEIHERGMNEDFLLIVLKELLPRRPELRLILMSATL 456 (1009)
Q Consensus 392 t~Iiv~T~g~Ll~~L~~~~---~l~~is~IIIDEaHeR~~~~d~ll~llk~ll~~~~~lkvIlmSATl 456 (1009)
..|+|+|-+.+-....... .-.+==+||+|||| |+-..+ +...++..+ ++...+++|.|+
T Consensus 351 ~~ii~TTIQKf~~~~~~~~~~~~~~~~ivvI~DEaH-RSQ~G~-~~~~~~~~~---~~a~~~gFTGTP 413 (962)
T COG0610 351 GKIIVTTIQKFNKAVKEDELELLKRKNVVVIIDEAH-RSQYGE-LAKLLKKAL---KKAIFIGFTGTP 413 (962)
T ss_pred CcEEEEEecccchhhhcccccccCCCcEEEEEechh-hccccH-HHHHHHHHh---ccceEEEeeCCc
Confidence 5899999988876665431 12222378899999 655544 444445444 346799999998
No 159
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=98.23 E-value=5e-06 Score=92.73 Aligned_cols=133 Identities=18% Similarity=0.081 Sum_probs=72.1
Q ss_pred cCCeEEEEecCCCchhhhHHHHHHHHHHHHhcC-CceEEEechhHHHHHHHHHHHHHHHhCC-cccceeeeeeee-----
Q 001817 312 ENQVVVVSGETGCGKTTQLPQYILESETEAARG-AACSIICTQPRRISAMAVSERVAAERGE-KLGESVGYKVRL----- 384 (1009)
Q Consensus 312 ~~~~vII~apTGSGKTt~~~~~ile~~~~~~~~-~~~~IvvtqPrR~La~qva~rva~e~~~-~~g~~vGy~vr~----- 384 (1009)
..+.++++-++|+|||.++..++.. +...... ....++|++|. .+..++...+.+.... .. ..+-|....
T Consensus 24 ~~~g~lL~de~GlGKT~~~i~~~~~-l~~~~~~~~~~~~LIv~P~-~l~~~W~~E~~~~~~~~~~-~v~~~~~~~~~~~~ 100 (299)
T PF00176_consen 24 PPRGGLLADEMGLGKTITAIALISY-LKNEFPQRGEKKTLIVVPS-SLLSQWKEEIEKWFDPDSL-RVIIYDGDSERRRL 100 (299)
T ss_dssp TT-EEEE---TTSSHHHHHHHHHHH-HHHCCTTSS-S-EEEEE-T-TTHHHHHHHHHHHSGT-TS--EEEESSSCHHHHT
T ss_pred CCCCEEEEECCCCCchhhhhhhhhh-hhhccccccccceeEeecc-chhhhhhhhhccccccccc-cccccccccccccc
Confidence 4578899999999999887766652 2222111 11135555598 6668888888777632 22 111111111
Q ss_pred ccccCCCcEEEEEccHHHH--------HHHhcCCCCCCccEEEEeCCCcC-CCcchHHHHHHHHHcccCCCCcEEEeccC
Q 001817 385 EGMKGRDTRLMFCTTGILL--------RRLLVDRSLRGVTHVIVDEIHER-GMNEDFLLIVLKELLPRRPELRLILMSAT 455 (1009)
Q Consensus 385 e~~~~~~t~Iiv~T~g~Ll--------~~L~~~~~l~~is~IIIDEaHeR-~~~~d~ll~llk~ll~~~~~lkvIlmSAT 455 (1009)
........+++++|.+.+. ..+. . -++++||+||+|.- +..+.... .+..+ . ....++||||
T Consensus 101 ~~~~~~~~~vvi~ty~~~~~~~~~~~~~~l~---~-~~~~~vIvDEaH~~k~~~s~~~~-~l~~l-~---~~~~~lLSgT 171 (299)
T PF00176_consen 101 SKNQLPKYDVVITTYETLRKARKKKDKEDLK---Q-IKWDRVIVDEAHRLKNKDSKRYK-ALRKL-R---ARYRWLLSGT 171 (299)
T ss_dssp TSSSCCCSSEEEEEHHHHH--TSTHTTHHHH---T-SEEEEEEETTGGGGTTTTSHHHH-HHHCC-C---ECEEEEE-SS
T ss_pred cccccccceeeeccccccccccccccccccc---c-ccceeEEEecccccccccccccc-ccccc-c---cceEEeeccc
Confidence 1222356789999999988 2221 1 34899999999963 33333222 22222 2 4567899999
Q ss_pred C
Q 001817 456 L 456 (1009)
Q Consensus 456 l 456 (1009)
+
T Consensus 172 P 172 (299)
T PF00176_consen 172 P 172 (299)
T ss_dssp -
T ss_pred c
Confidence 8
No 160
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=98.21 E-value=4.1e-05 Score=91.18 Aligned_cols=113 Identities=19% Similarity=0.226 Sum_probs=85.9
Q ss_pred CCcEEEEcCCHhHHHHHHHHHHcCCCCCCCCCeEEEEecCCCCHHHHHhhcCCCCCCc-e-EEEEecCccccccCCCCee
Q 001817 577 PGAVLVFMTGWDDINSLKDQLQAHPLLGDPSRVLLLACHGSMASSEQRLIFDKPEDGV-R-KIVLATNMAETSITINDVV 654 (1009)
Q Consensus 577 ~g~iLVFl~~~~~i~~l~~~L~~~~~~~~~~~~~v~~lHs~l~~~er~~v~~~f~~G~-~-kVLVATniae~GIdIp~V~ 654 (1009)
+.+||+|-.=.....-|...|... ++...-+.|+..-.+|+.+++.|...+ + -.|++|-...-|||+-..+
T Consensus 777 G~RVLiFSQFTqmLDILE~~L~~l-------~~~ylRLDGsTqV~~RQ~lId~Fn~d~difVFLLSTKAGG~GINLt~An 849 (941)
T KOG0389|consen 777 GDRVLIFSQFTQMLDILEVVLDTL-------GYKYLRLDGSTQVNDRQDLIDEFNTDKDIFVFLLSTKAGGFGINLTCAN 849 (941)
T ss_pred CCEEEEeeHHHHHHHHHHHHHHhc-------CceEEeecCCccchHHHHHHHhhccCCceEEEEEeeccCcceecccccc
Confidence 468999975544445555555554 667888999999999999999997543 3 4578999999999999998
Q ss_pred EEEeCCCCccccccCCCCCCcccccccCHHhHHhhhcccCCCCCCcEEEecchhhhh
Q 001817 655 FVIDCGKAKETSYDALNNTPCLLPSWISKAAARQRRGRAGRVQPGECYHLYPRYVYD 711 (1009)
Q Consensus 655 ~VId~g~~k~~~yd~~~~~~~l~~~~iS~as~~QR~GRAGR~~~G~c~~Lys~~~~~ 711 (1009)
.||-.+.. |+|.. --++.-|+-|.|.++|=.+|+|+++...+
T Consensus 850 ~VIihD~d----FNP~d-----------D~QAEDRcHRvGQtkpVtV~rLItk~TIE 891 (941)
T KOG0389|consen 850 TVIIHDID----FNPYD-----------DKQAEDRCHRVGQTKPVTVYRLITKSTIE 891 (941)
T ss_pred eEEEeecC----CCCcc-----------cchhHHHHHhhCCcceeEEEEEEecCcHH
Confidence 88874443 33332 23566788888888999999999987665
No 161
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=98.02 E-value=1.9e-06 Score=104.80 Aligned_cols=153 Identities=18% Similarity=0.189 Sum_probs=99.3
Q ss_pred CeEEEEecCCCchhhhHHHHHHHHHHHHhcCCceEEEechhHHHHHHHHHHHHHHHhCCcccceeee---eeeeccccCC
Q 001817 314 QVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERGEKLGESVGY---KVRLEGMKGR 390 (1009)
Q Consensus 314 ~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~IvvtqPrR~La~qva~rva~e~~~~~g~~vGy---~vr~e~~~~~ 390 (1009)
.++++-+|||+|||..+...+..... ..+.++++++.|-++|+...+.+.....-.. |..++- .+.-+-..-.
T Consensus 944 ~~~~~g~ptgsgkt~~ae~a~~~~~~---~~p~~kvvyIap~kalvker~~Dw~~r~~~~-g~k~ie~tgd~~pd~~~v~ 1019 (1230)
T KOG0952|consen 944 LNFLLGAPTGSGKTVVAELAIFRALS---YYPGSKVVYIAPDKALVKERSDDWSKRDELP-GIKVIELTGDVTPDVKAVR 1019 (1230)
T ss_pred hhhhhcCCccCcchhHHHHHHHHHhc---cCCCccEEEEcCCchhhcccccchhhhcccC-CceeEeccCccCCChhhee
Confidence 45677899999999999888776543 3345789999999999999888887665443 332221 1111111224
Q ss_pred CcEEEEEccHHHHHHHh---cCCCCCCccEEEEeCCCcCCCcchHHHHHHHHHc-----ccCCCCcEEEeccCC-CHHHH
Q 001817 391 DTRLMFCTTGILLRRLL---VDRSLRGVTHVIVDEIHERGMNEDFLLIVLKELL-----PRRPELRLILMSATL-NAELF 461 (1009)
Q Consensus 391 ~t~Iiv~T~g~Ll~~L~---~~~~l~~is~IIIDEaHeR~~~~d~ll~llk~ll-----~~~~~lkvIlmSATl-~~~~~ 461 (1009)
+++|+++||...-.... +...+.+++.+|+||.|.-|-+-.-.+.++..-. ...+.+|++++|--+ |+.++
T Consensus 1020 ~~~~~ittpek~dgi~Rsw~~r~~v~~v~~iv~de~hllg~~rgPVle~ivsr~n~~s~~t~~~vr~~glsta~~na~dl 1099 (1230)
T KOG0952|consen 1020 EADIVITTPEKWDGISRSWQTRKYVQSVSLIVLDEIHLLGEDRGPVLEVIVSRMNYISSQTEEPVRYLGLSTALANANDL 1099 (1230)
T ss_pred cCceEEcccccccCccccccchhhhccccceeecccccccCCCcceEEEEeeccccCccccCcchhhhhHhhhhhccHHH
Confidence 68899999987654443 3347889999999999963322111111111111 123456788877666 99999
Q ss_pred HhhhCCCCe
Q 001817 462 SSYFGGAPM 470 (1009)
Q Consensus 462 ~~yf~~~pv 470 (1009)
++|++-.+.
T Consensus 1100 a~wl~~~~~ 1108 (1230)
T KOG0952|consen 1100 ADWLNIKDM 1108 (1230)
T ss_pred HHHhCCCCc
Confidence 999985554
No 162
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=97.97 E-value=4.2e-05 Score=95.41 Aligned_cols=66 Identities=14% Similarity=0.087 Sum_probs=46.8
Q ss_pred CcEEEEEccHHHHHHHhcCC-CCCCccEEEEeCCCcCCCcchHHHHHHHHHcccCCCCcEEEeccCCC
Q 001817 391 DTRLMFCTTGILLRRLLVDR-SLRGVTHVIVDEIHERGMNEDFLLIVLKELLPRRPELRLILMSATLN 457 (1009)
Q Consensus 391 ~t~Iiv~T~g~Ll~~L~~~~-~l~~is~IIIDEaHeR~~~~d~ll~llk~ll~~~~~lkvIlmSATl~ 457 (1009)
...|+++||.+|..-|+.+. .++.++.|||||||. ...+-...-+++.....++..-|.+|||.+.
T Consensus 7 ~ggi~~~T~rIl~~DlL~~ri~~~~itgiiv~~Ahr-~~~~~~eaFI~rlyr~~n~~gfIkafSdsP~ 73 (814)
T TIGR00596 7 EGGIFSITSRILVVDLLTGIIPPELITGILVLRADR-IIESSQEAFILRLYRQKNKTGFIKAFSDNPE 73 (814)
T ss_pred cCCEEEEechhhHhHHhcCCCCHHHccEEEEeeccc-ccccccHHHHHHHHHHhCCCcceEEecCCCc
Confidence 46799999999998887776 899999999999994 2222211122233333455666999999984
No 163
>PF13245 AAA_19: Part of AAA domain
Probab=97.93 E-value=2.6e-05 Score=68.73 Aligned_cols=60 Identities=30% Similarity=0.413 Sum_probs=46.5
Q ss_pred HHHHHHcCCeEEEEecCCCchhhhHHHHHHHHHHHHhcCCceEEEechhHHHHHHHHHHHH
Q 001817 306 LLKAISENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERV 366 (1009)
Q Consensus 306 il~~l~~~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~IvvtqPrR~La~qva~rv 366 (1009)
+..++.+++.++|.||.|||||+.+...+.+.......+ ...|+|+.|++.++..+.+++
T Consensus 3 v~~al~~~~~~vv~g~pGtGKT~~~~~~i~~l~~~~~~~-~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 3 VRRALAGSPLFVVQGPPGTGKTTTLAARIAELLAARADP-GKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred HHHHHhhCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCC-CCeEEEECCCHHHHHHHHHHH
Confidence 444666677888899999999988877777655322233 567888899999999999988
No 164
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.88 E-value=3.2e-05 Score=75.18 Aligned_cols=119 Identities=22% Similarity=0.326 Sum_probs=66.6
Q ss_pred HcCCeEEEEecCCCchhhhHHHHHHHHHHHHh-cCCceEEEechhHHHHHHHHHHHHHHHhCCcccceeeeeeeeccccC
Q 001817 311 SENQVVVVSGETGCGKTTQLPQYILESETEAA-RGAACSIICTQPRRISAMAVSERVAAERGEKLGESVGYKVRLEGMKG 389 (1009)
Q Consensus 311 ~~~~~vII~apTGSGKTt~~~~~ile~~~~~~-~~~~~~IvvtqPrR~La~qva~rva~e~~~~~g~~vGy~vr~e~~~~ 389 (1009)
++++.++|.|++|+|||+.+-.++.+...... ......+.+..|...-...++..+...++.....
T Consensus 2 ~~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~------------- 68 (131)
T PF13401_consen 2 QSQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKS------------- 68 (131)
T ss_dssp -----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSS-------------
T ss_pred CCCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccc-------------
Confidence 35678999999999999888877765432211 1123345555565555667777777777654332
Q ss_pred CCcEEEEEccH----HHHHHHhcCCCCCCccEEEEeCCCcCCCcchHHHHHHHHHcccCCCCcEEEeccC
Q 001817 390 RDTRLMFCTTG----ILLRRLLVDRSLRGVTHVIVDEIHERGMNEDFLLIVLKELLPRRPELRLILMSAT 455 (1009)
Q Consensus 390 ~~t~Iiv~T~g----~Ll~~L~~~~~l~~is~IIIDEaHeR~~~~d~ll~llk~ll~~~~~lkvIlmSAT 455 (1009)
-.|.. .+.+.+... ...+|||||+|... . +-.+..++.+.. .+++++|+..-.
T Consensus 69 ------~~~~~~l~~~~~~~l~~~----~~~~lviDe~~~l~-~-~~~l~~l~~l~~-~~~~~vvl~G~~ 125 (131)
T PF13401_consen 69 ------RQTSDELRSLLIDALDRR----RVVLLVIDEADHLF-S-DEFLEFLRSLLN-ESNIKVVLVGTP 125 (131)
T ss_dssp ------TS-HHHHHHHHHHHHHHC----TEEEEEEETTHHHH-T-HHHHHHHHHHTC-SCBEEEEEEESS
T ss_pred ------cCCHHHHHHHHHHHHHhc----CCeEEEEeChHhcC-C-HHHHHHHHHHHh-CCCCeEEEEECh
Confidence 11222 233333322 22689999999732 3 555566667666 567776665443
No 165
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=97.84 E-value=0.00066 Score=83.40 Aligned_cols=115 Identities=23% Similarity=0.181 Sum_probs=67.6
Q ss_pred HHHHHHHHcCCeEEEEecCCCchhhhHHHHHHHHHHHHhcCCceEEEechhHHHHHHHHHHHHHHHhCCcccceeeeee-
Q 001817 304 DALLKAISENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERGEKLGESVGYKV- 382 (1009)
Q Consensus 304 ~~il~~l~~~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~IvvtqPrR~La~qva~rva~e~~~~~g~~vGy~v- 382 (1009)
-+++-++.-+..-|.-.-||=|||+.+.+++.=..+ .|+ +.-++|+- -=||.--++.+...+ .-+|.+||..+
T Consensus 84 VQliG~i~lh~g~iaEM~TGEGKTL~atlp~ylnaL---~gk-gVhvVTvN-dYLA~RDae~m~~l~-~~LGlsvG~~~~ 157 (822)
T COG0653 84 VQLLGGIVLHLGDIAEMRTGEGKTLVATLPAYLNAL---AGK-GVHVVTVN-DYLARRDAEWMGPLY-EFLGLSVGVILA 157 (822)
T ss_pred HHHhhhhhhcCCceeeeecCCchHHHHHHHHHHHhc---CCC-CcEEeeeh-HHhhhhCHHHHHHHH-HHcCCceeeccC
Confidence 556777777777788999999999988887765443 233 34445443 223332233332222 22344555333
Q ss_pred ---eeccccCCCcEEEEEccHHH-----HHHHhcC---CCCCCccEEEEeCCC
Q 001817 383 ---RLEGMKGRDTRLMFCTTGIL-----LRRLLVD---RSLRGVTHVIVDEIH 424 (1009)
Q Consensus 383 ---r~e~~~~~~t~Iiv~T~g~L-----l~~L~~~---~~l~~is~IIIDEaH 424 (1009)
..++...-.++|+|+|...| -+.+... .......+-|+||++
T Consensus 158 ~m~~~ek~~aY~~DItY~TnnElGFDYLRDNm~~~~ee~vqr~~~faIvDEvD 210 (822)
T COG0653 158 GMSPEEKRAAYACDITYGTNNELGFDYLRDNMVTSQEEKVQRGLNFAIVDEVD 210 (822)
T ss_pred CCChHHHHHHHhcCceeccccccCcchhhhhhhccHHHhhhccCCeEEEcchh
Confidence 23333445689999998544 2222221 256678888999988
No 166
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.79 E-value=0.00017 Score=83.12 Aligned_cols=132 Identities=20% Similarity=0.211 Sum_probs=79.0
Q ss_pred cCCeEEEEecCCCchhhhHHHHHHHHHHHH-hcCCceEEEechhHHHHHHHHHHHHHHHhCCcccceeeeeeeeccccCC
Q 001817 312 ENQVVVVSGETGCGKTTQLPQYILESETEA-ARGAACSIICTQPRRISAMAVSERVAAERGEKLGESVGYKVRLEGMKGR 390 (1009)
Q Consensus 312 ~~~~vII~apTGSGKTt~~~~~ile~~~~~-~~~~~~~IvvtqPrR~La~qva~rva~e~~~~~g~~vGy~vr~e~~~~~ 390 (1009)
..++++++||||+||||.+........... ..+....++.+=+.|..|...-..+++.+|..+ .
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv--~------------- 237 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPV--K------------- 237 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcce--E-------------
Confidence 356899999999999998876654433221 133444555555778877766666655444332 0
Q ss_pred CcEEEEEccHHHHHHHhcCCCCCCccEEEEeCCCcCCCcchHHHHHHHHHcc-cCCC-CcEEEeccCCCHHHHHhhhC
Q 001817 391 DTRLMFCTTGILLRRLLVDRSLRGVTHVIVDEIHERGMNEDFLLIVLKELLP-RRPE-LRLILMSATLNAELFSSYFG 466 (1009)
Q Consensus 391 ~t~Iiv~T~g~Ll~~L~~~~~l~~is~IIIDEaHeR~~~~d~ll~llk~ll~-~~~~-lkvIlmSATl~~~~~~~yf~ 466 (1009)
..-++..+...+. .+.++++||||++. |.......+.-++.++. ..++ -.++.+|||...+.+.+.|.
T Consensus 238 ----~~~~~~~l~~~L~---~~~~~DlVLIDTaG-r~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~~~~~~~~~ 307 (388)
T PRK12723 238 ----AIESFKDLKEEIT---QSKDFDLVLVDTIG-KSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKTSDVKEIFH 307 (388)
T ss_pred ----eeCcHHHHHHHHH---HhCCCCEEEEcCCC-CCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCHHHHHHHHH
Confidence 1112334444333 24688999999999 44332223444444444 2233 35788999997776665553
No 167
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=97.65 E-value=0.0082 Score=68.50 Aligned_cols=116 Identities=13% Similarity=0.206 Sum_probs=75.0
Q ss_pred hhcCCCcEEEEcCCHhHHHHHHHHHHcCCCCCCCCCeEEEEecCCCCHHHHHhhcCCCCCC--ceEEEEecCccccccCC
Q 001817 573 KKERPGAVLVFMTGWDDINSLKDQLQAHPLLGDPSRVLLLACHGSMASSEQRLIFDKPEDG--VRKIVLATNMAETSITI 650 (1009)
Q Consensus 573 ~~~~~g~iLVFl~~~~~i~~l~~~L~~~~~~~~~~~~~v~~lHs~l~~~er~~v~~~f~~G--~~kVLVATniae~GIdI 650 (1009)
++...-+.|||..=.....-+.-.|.+. ++.+..+-|+|++..|...++.|++. .+-.|++-......+|+
T Consensus 634 ~rd~t~KsIVFSQFTSmLDLi~~rL~ka-------GfscVkL~GsMs~~ardatik~F~nd~~c~vfLvSLkAGGVALNL 706 (791)
T KOG1002|consen 634 ERDRTAKSIVFSQFTSMLDLIEWRLGKA-------GFSCVKLVGSMSPAARDATIKYFKNDIDCRVFLVSLKAGGVALNL 706 (791)
T ss_pred HcccchhhhhHHHHHHHHHHHHHHhhcc-------CceEEEeccCCChHHHHHHHHHhccCCCeEEEEEEeccCceEeee
Confidence 3334456777765444444444455554 88899999999999999999999864 23345666666666777
Q ss_pred CCeeEEEeCCCCccccccCCCCCCcccccccCHHhHHhhhcccCCCCCCcEEEecchhhh
Q 001817 651 NDVVFVIDCGKAKETSYDALNNTPCLLPSWISKAAARQRRGRAGRVQPGECYHLYPRYVY 710 (1009)
Q Consensus 651 p~V~~VId~g~~k~~~yd~~~~~~~l~~~~iS~as~~QR~GRAGR~~~G~c~~Lys~~~~ 710 (1009)
-....|...+.- |+|.. +| ++.-|+-|.|..+|-++.+++-+...
T Consensus 707 teASqVFmmDPW----WNpaV-------e~----Qa~DRiHRIGQ~rPvkvvrf~iEnsi 751 (791)
T KOG1002|consen 707 TEASQVFMMDPW----WNPAV-------EW----QAQDRIHRIGQYRPVKVVRFCIENSI 751 (791)
T ss_pred chhceeEeeccc----ccHHH-------Hh----hhhhhHHhhcCccceeEEEeehhccH
Confidence 777777653211 22210 11 34457777787888888888765443
No 168
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.64 E-value=0.00019 Score=75.40 Aligned_cols=128 Identities=27% Similarity=0.352 Sum_probs=80.3
Q ss_pred CeEEEEecCCCchhhhHHHHHHHHHHHHhcCCceEEEechhHHHHHHHHHHHHHHHhCCcccceeeeeeeeccccCCCcE
Q 001817 314 QVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERGEKLGESVGYKVRLEGMKGRDTR 393 (1009)
Q Consensus 314 ~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~IvvtqPrR~La~qva~rva~e~~~~~g~~vGy~vr~e~~~~~~t~ 393 (1009)
++++++||||+||||.+......... ++....++++-..|+.|.+.-+.+++.++..+.. .+.+ .
T Consensus 2 ~vi~lvGptGvGKTTt~aKLAa~~~~---~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~-----~~~~----~--- 66 (196)
T PF00448_consen 2 KVIALVGPTGVGKTTTIAKLAARLKL---KGKKVALISADTYRIGAVEQLKTYAEILGVPFYV-----ARTE----S--- 66 (196)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHH---TT--EEEEEESTSSTHHHHHHHHHHHHHTEEEEE-----SSTT----S---
T ss_pred EEEEEECCCCCchHhHHHHHHHHHhh---ccccceeecCCCCCccHHHHHHHHHHHhccccch-----hhcc----h---
Confidence 47889999999999998887765443 2566777788788999988888888877754211 1000 0
Q ss_pred EEEEccHHHHHHHhcCCCCCCccEEEEeCCCcCCCcchHHHHHHHHHccc-CCCCcEEEeccCCCHHHH
Q 001817 394 LMFCTTGILLRRLLVDRSLRGVTHVIVDEIHERGMNEDFLLIVLKELLPR-RPELRLILMSATLNAELF 461 (1009)
Q Consensus 394 Iiv~T~g~Ll~~L~~~~~l~~is~IIIDEaHeR~~~~d~ll~llk~ll~~-~~~lkvIlmSATl~~~~~ 461 (1009)
.|..+++........+++++|+||-+. |+....-++.-++.+... .+.--++.||||...+.+
T Consensus 67 ----~~~~~~~~~l~~~~~~~~D~vlIDT~G-r~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~ 130 (196)
T PF00448_consen 67 ----DPAEIAREALEKFRKKGYDLVLIDTAG-RSPRDEELLEELKKLLEALNPDEVHLVLSATMGQEDL 130 (196)
T ss_dssp ----CHHHHHHHHHHHHHHTTSSEEEEEE-S-SSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHH
T ss_pred ----hhHHHHHHHHHHHhhcCCCEEEEecCC-cchhhHHHHHHHHHHhhhcCCccceEEEecccChHHH
Confidence 122233222211123568999999998 555554455555555443 455567889999965543
No 169
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=97.61 E-value=0.00013 Score=76.72 Aligned_cols=57 Identities=35% Similarity=0.419 Sum_probs=41.2
Q ss_pred CCHHHHHHHHHHHHcCCeEEEEecCCCchhhhHHHHHHHHHHHHhcCCceEEEechhHHH
Q 001817 298 PSYKERDALLKAISENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRI 357 (1009)
Q Consensus 298 Pi~~~q~~il~~l~~~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~IvvtqPrR~ 357 (1009)
|....|...++++.+++.+++.||.|||||+.+....++.+.. +...+|+++-|...
T Consensus 4 p~~~~Q~~~~~al~~~~~v~~~G~AGTGKT~LA~a~Al~~v~~---g~~~kiii~Rp~v~ 60 (205)
T PF02562_consen 4 PKNEEQKFALDALLNNDLVIVNGPAGTGKTFLALAAALELVKE---GEYDKIIITRPPVE 60 (205)
T ss_dssp --SHHHHHHHHHHHH-SEEEEE--TTSSTTHHHHHHHHHHHHT---TS-SEEEEEE-S--
T ss_pred CCCHHHHHHHHHHHhCCeEEEECCCCCcHHHHHHHHHHHHHHh---CCCcEEEEEecCCC
Confidence 6677889999999999999999999999999999888887643 55668888777653
No 170
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=97.57 E-value=0.0027 Score=81.80 Aligned_cols=111 Identities=21% Similarity=0.281 Sum_probs=87.8
Q ss_pred cEEEEcCCHhHHHHHHHHHHcCCCCCCCCCeEEEEecCCCCHHHHHhhcCCCCCC--ceEEEEecCccccccCCCCeeEE
Q 001817 579 AVLVFMTGWDDINSLKDQLQAHPLLGDPSRVLLLACHGSMASSEQRLIFDKPEDG--VRKIVLATNMAETSITINDVVFV 656 (1009)
Q Consensus 579 ~iLVFl~~~~~i~~l~~~L~~~~~~~~~~~~~v~~lHs~l~~~er~~v~~~f~~G--~~kVLVATniae~GIdIp~V~~V 656 (1009)
++|||.+-.....-+...+... ++....++|+++.++|...++.|.++ ..-++++|-....|+|+-..+.|
T Consensus 713 kvlifsq~t~~l~il~~~l~~~-------~~~~~~ldG~~~~~~r~~~i~~f~~~~~~~v~lls~kagg~glnLt~a~~v 785 (866)
T COG0553 713 KVLIFSQFTPVLDLLEDYLKAL-------GIKYVRLDGSTPAKRRQELIDRFNADEEEKVFLLSLKAGGLGLNLTGADTV 785 (866)
T ss_pred cEEEEeCcHHHHHHHHHHHHhc-------CCcEEEEeCCCChhhHHHHHHHhhcCCCCceEEEEecccccceeecccceE
Confidence 7999999999999898888876 35688999999999999999999985 55667888999999999999999
Q ss_pred EeCCCCccccccCCCCCCcccccccCHHhHHhhhcccCCCCCCcEEEecchhhhh
Q 001817 657 IDCGKAKETSYDALNNTPCLLPSWISKAAARQRRGRAGRVQPGECYHLYPRYVYD 711 (1009)
Q Consensus 657 Id~g~~k~~~yd~~~~~~~l~~~~iS~as~~QR~GRAGR~~~G~c~~Lys~~~~~ 711 (1009)
|. ||+..+.. -..++..|+-|.|+..+=.+|++.++...+
T Consensus 786 i~--------~d~~wnp~-------~~~Qa~dRa~RigQ~~~v~v~r~i~~~tiE 825 (866)
T COG0553 786 IL--------FDPWWNPA-------VELQAIDRAHRIGQKRPVKVYRLITRGTIE 825 (866)
T ss_pred EE--------eccccChH-------HHHHHHHHHHHhcCcceeEEEEeecCCcHH
Confidence 98 45433322 223555666666667778889998887654
No 171
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=97.56 E-value=0.0032 Score=73.30 Aligned_cols=116 Identities=15% Similarity=0.175 Sum_probs=86.3
Q ss_pred hcCCCcEEEEcCCHhHHHHHHHHHHcCCCCCCCCCeEEEEecCCCCHHHHHhhcCCCCCCceEEEEecCcc--ccccCCC
Q 001817 574 KERPGAVLVFMTGWDDINSLKDQLQAHPLLGDPSRVLLLACHGSMASSEQRLIFDKPEDGVRKIVLATNMA--ETSITIN 651 (1009)
Q Consensus 574 ~~~~g~iLVFl~~~~~i~~l~~~L~~~~~~~~~~~~~v~~lHs~l~~~er~~v~~~f~~G~~kVLVATnia--e~GIdIp 651 (1009)
....+.+|||+|+.-+--++.+.|.+. ++....+|--.+..+-.++-..|..|+.+||+-|.=+ =+=..|-
T Consensus 297 ~~~~~~~LIfIPSYfDfVRlRN~lk~~-------~~sF~~i~EYts~~~isRAR~~F~~G~~~iLL~TER~HFfrRy~ir 369 (442)
T PF06862_consen 297 DSKMSGTLIFIPSYFDFVRLRNYLKKE-------NISFVQISEYTSNSDISRARSQFFHGRKPILLYTERFHFFRRYRIR 369 (442)
T ss_pred ccCCCcEEEEecchhhhHHHHHHHHhc-------CCeEEEecccCCHHHHHHHHHHHHcCCceEEEEEhHHhhhhhceec
Confidence 455678999999999999999999865 6667788888888888888888999999999999533 2345678
Q ss_pred CeeEEEeCCCCccccccCCCCCCcccccccCHHhHHhhhcccCC----CCCCcEEEecchhhhh
Q 001817 652 DVVFVIDCGKAKETSYDALNNTPCLLPSWISKAAARQRRGRAGR----VQPGECYHLYPRYVYD 711 (1009)
Q Consensus 652 ~V~~VId~g~~k~~~yd~~~~~~~l~~~~iS~as~~QR~GRAGR----~~~G~c~~Lys~~~~~ 711 (1009)
+|..||-+|+|..+.|-+ ++..+.+.... ...+.|..||++.+--
T Consensus 370 Gi~~viFY~~P~~p~fY~---------------El~n~~~~~~~~~~~~~~~~~~~lysk~D~~ 418 (442)
T PF06862_consen 370 GIRHVIFYGPPENPQFYS---------------ELLNMLDESSGGEVDAADATVTVLYSKYDAL 418 (442)
T ss_pred CCcEEEEECCCCChhHHH---------------HHHhhhcccccccccccCceEEEEecHhHHH
Confidence 999999999998655422 22333332222 2457899999986543
No 172
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=97.55 E-value=0.0002 Score=83.69 Aligned_cols=62 Identities=19% Similarity=0.367 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHcC-CeEEEEecCCCchhhhHHHHHHHHHHHHhcCCceEEEechhHHHHHHHHHHHHH
Q 001817 301 KERDALLKAISEN-QVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVA 367 (1009)
Q Consensus 301 ~~q~~il~~l~~~-~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~IvvtqPrR~La~qva~rva 367 (1009)
.+|.++.....++ ...+|.||+|+|||+.+...|.+.+.. +.+|+|..|+.+++..+.+|+.
T Consensus 188 ~SQk~Av~~~~~~k~l~~I~GPPGTGKT~TlvEiI~qlvk~-----~k~VLVcaPSn~AVdNiverl~ 250 (649)
T KOG1803|consen 188 SSQKAAVSFAINNKDLLIIHGPPGTGKTRTLVEIISQLVKQ-----KKRVLVCAPSNVAVDNIVERLT 250 (649)
T ss_pred HHHHHHHHHHhccCCceEeeCCCCCCceeeHHHHHHHHHHc-----CCeEEEEcCchHHHHHHHHHhc
Confidence 4556666655555 778899999999998888777665532 3589999999999999998754
No 173
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=97.49 E-value=0.00027 Score=74.26 Aligned_cols=119 Identities=27% Similarity=0.322 Sum_probs=64.8
Q ss_pred HHHHHHHHH-HcC-CeEEEEecCCCchhhhHHHHHHHHHHHHhcCCceEEEechhHHHHHHHHHHHHHHHhCCcccceee
Q 001817 302 ERDALLKAI-SEN-QVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERGEKLGESVG 379 (1009)
Q Consensus 302 ~q~~il~~l-~~~-~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~IvvtqPrR~La~qva~rva~e~~~~~g~~vG 379 (1009)
.|.+++..+ .++ +.++|.|+.|||||+.+-. +.+.+.. .+..|+++.||..++..+.+.. +..
T Consensus 5 ~Q~~a~~~~l~~~~~~~~l~G~aGtGKT~~l~~-~~~~~~~----~g~~v~~~apT~~Aa~~L~~~~----~~~------ 69 (196)
T PF13604_consen 5 EQREAVRAILTSGDRVSVLQGPAGTGKTTLLKA-LAEALEA----AGKRVIGLAPTNKAAKELREKT----GIE------ 69 (196)
T ss_dssp HHHHHHHHHHHCTCSEEEEEESTTSTHHHHHHH-HHHHHHH----TT--EEEEESSHHHHHHHHHHH----TS-------
T ss_pred HHHHHHHHHHhcCCeEEEEEECCCCCHHHHHHH-HHHHHHh----CCCeEEEECCcHHHHHHHHHhh----Ccc------
Confidence 345555555 443 5788999999999976543 4444332 2357888889999888876663 211
Q ss_pred eeeeeccccCCCcEEEEEccHHHHHHHhcC-----CCCCCccEEEEeCCCcCCCcchHHHHHHHHHcccCCCCcEEEecc
Q 001817 380 YKVRLEGMKGRDTRLMFCTTGILLRRLLVD-----RSLRGVTHVIVDEIHERGMNEDFLLIVLKELLPRRPELRLILMSA 454 (1009)
Q Consensus 380 y~vr~e~~~~~~t~Iiv~T~g~Ll~~L~~~-----~~l~~is~IIIDEaHeR~~~~d~ll~llk~ll~~~~~lkvIlmSA 454 (1009)
..|-..++...... +.+...++|||||+-. +....+..+++.+-. .+.|+|++-=
T Consensus 70 ----------------a~Ti~~~l~~~~~~~~~~~~~~~~~~vliVDEasm--v~~~~~~~ll~~~~~--~~~klilvGD 129 (196)
T PF13604_consen 70 ----------------AQTIHSFLYRIPNGDDEGRPELPKKDVLIVDEASM--VDSRQLARLLRLAKK--SGAKLILVGD 129 (196)
T ss_dssp ----------------EEEHHHHTTEECCEECCSSCC-TSTSEEEESSGGG---BHHHHHHHHHHS-T---T-EEEEEE-
T ss_pred ----------------hhhHHHHHhcCCcccccccccCCcccEEEEecccc--cCHHHHHHHHHHHHh--cCCEEEEECC
Confidence 11111111111000 0155668999999995 555555555544432 3567777654
Q ss_pred C
Q 001817 455 T 455 (1009)
Q Consensus 455 T 455 (1009)
+
T Consensus 130 ~ 130 (196)
T PF13604_consen 130 P 130 (196)
T ss_dssp T
T ss_pred c
Confidence 4
No 174
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=97.48 E-value=0.00054 Score=85.36 Aligned_cols=104 Identities=25% Similarity=0.329 Sum_probs=75.5
Q ss_pred CCCcEEEEcCCHhHHHHHHHHHHcCCCCCCCCCeEEEEecCCCCHHHHHhhcCCCCCCceEEEEecCccccccCCC----
Q 001817 576 RPGAVLVFMTGWDDINSLKDQLQAHPLLGDPSRVLLLACHGSMASSEQRLIFDKPEDGVRKIVLATNMAETSITIN---- 651 (1009)
Q Consensus 576 ~~g~iLVFl~~~~~i~~l~~~L~~~~~~~~~~~~~v~~lHs~l~~~er~~v~~~f~~G~~kVLVATniae~GIdIp---- 651 (1009)
.+.||||-+.+.+.-+.+.++|... ++..-.+++.....|-..|-++-+.| .|-||||+|.+|-||-
T Consensus 627 ~GrPVLVGT~SVe~SE~lS~~L~~~-------gI~H~VLNAK~h~~EAeIVA~AG~~G--aVTIATNMAGRGTDIkLg~~ 697 (1112)
T PRK12901 627 AGRPVLVGTTSVEISELLSRMLKMR-------KIPHNVLNAKLHQKEAEIVAEAGQPG--TVTIATNMAGRGTDIKLSPE 697 (1112)
T ss_pred CCCCEEEEeCcHHHHHHHHHHHHHc-------CCcHHHhhccchhhHHHHHHhcCCCC--cEEEeccCcCCCcCcccchh
Confidence 4579999999999999999999886 33333445544444544455554444 5889999999999997
Q ss_pred ----CeeEEEeCCCCccccccCCCCCCcccccccCHHhHHhhhcccCCCC-CCcEEEecc
Q 001817 652 ----DVVFVIDCGKAKETSYDALNNTPCLLPSWISKAAARQRRGRAGRVQ-PGECYHLYP 706 (1009)
Q Consensus 652 ----~V~~VId~g~~k~~~yd~~~~~~~l~~~~iS~as~~QR~GRAGR~~-~G~c~~Lys 706 (1009)
+=-+||-+.++. |+---.|-+|||||.| ||.+-.+.|
T Consensus 698 V~e~GGL~VIgTerhe------------------SrRID~QLrGRaGRQGDPGsS~f~lS 739 (1112)
T PRK12901 698 VKAAGGLAIIGTERHE------------------SRRVDRQLRGRAGRQGDPGSSQFYVS 739 (1112)
T ss_pred hHHcCCCEEEEccCCC------------------cHHHHHHHhcccccCCCCCcceEEEE
Confidence 235777766665 5556679999999996 587655544
No 175
>PRK10536 hypothetical protein; Provisional
Probab=97.45 E-value=0.00042 Score=74.87 Aligned_cols=59 Identities=31% Similarity=0.379 Sum_probs=46.8
Q ss_pred CCCCHHHHHHHHHHHHcCCeEEEEecCCCchhhhHHHHHHHHHHHHhcCCceEEEechhHHH
Q 001817 296 SLPSYKERDALLKAISENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRI 357 (1009)
Q Consensus 296 ~LPi~~~q~~il~~l~~~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~IvvtqPrR~ 357 (1009)
.-|....|...+.++.++..+++.||+|||||+.+..+.++.+.. +...+|+++-|...
T Consensus 57 i~p~n~~Q~~~l~al~~~~lV~i~G~aGTGKT~La~a~a~~~l~~---~~~~kIiI~RP~v~ 115 (262)
T PRK10536 57 ILARNEAQAHYLKAIESKQLIFATGEAGCGKTWISAAKAAEALIH---KDVDRIIVTRPVLQ 115 (262)
T ss_pred ccCCCHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHHHhc---CCeeEEEEeCCCCC
Confidence 357788899999999999999999999999999888887766543 23556777666643
No 176
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=97.45 E-value=0.00079 Score=82.00 Aligned_cols=137 Identities=20% Similarity=0.236 Sum_probs=77.6
Q ss_pred HHHHHHHHHcCCeEEEEecCCCchhhhHHHHHHHHHHHHhc-CCceEEEechhHHHHHHHHHHHHHHHhCCcccceeeee
Q 001817 303 RDALLKAISENQVVVVSGETGCGKTTQLPQYILESETEAAR-GAACSIICTQPRRISAMAVSERVAAERGEKLGESVGYK 381 (1009)
Q Consensus 303 q~~il~~l~~~~~vII~apTGSGKTt~~~~~ile~~~~~~~-~~~~~IvvtqPrR~La~qva~rva~e~~~~~g~~vGy~ 381 (1009)
|...+.....++.++|+|+.|+||||.+...+.. +..... ....+|++++||--+|..+.+.+..... .++..
T Consensus 150 Qk~A~~~al~~~~~vitGgpGTGKTt~v~~ll~~-l~~~~~~~~~~~I~l~APTGkAA~rL~e~~~~~~~-~l~~~---- 223 (586)
T TIGR01447 150 QKVAVALALKSNFSLITGGPGTGKTTTVARLLLA-LVKQSPKQGKLRIALAAPTGKAAARLAESLRKAVK-NLAAA---- 223 (586)
T ss_pred HHHHHHHHhhCCeEEEEcCCCCCHHHHHHHHHHH-HHHhccccCCCcEEEECCcHHHHHHHHHHHHhhhc-ccccc----
Confidence 4444455557899999999999999887655432 222111 1135799999999999888887755332 11100
Q ss_pred eeeccccCCCcEEEEEccHHHHHHHhc-------CCCCCCccEEEEeCCCcCCCcchHHHHHHHHHcccCCCCcEEEecc
Q 001817 382 VRLEGMKGRDTRLMFCTTGILLRRLLV-------DRSLRGVTHVIVDEIHERGMNEDFLLIVLKELLPRRPELRLILMSA 454 (1009)
Q Consensus 382 vr~e~~~~~~t~Iiv~T~g~Ll~~L~~-------~~~l~~is~IIIDEaHeR~~~~d~ll~llk~ll~~~~~lkvIlmSA 454 (1009)
.. ......+-..|-..++..... ......+++|||||+=. ++...+..+++.+ .+..|+|++-=
T Consensus 224 ---~~-~~~~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIiDEaSM--vd~~l~~~ll~al---~~~~rlIlvGD 294 (586)
T TIGR01447 224 ---EA-LIAALPSEAVTIHRLLGIKPDTKRFRHHERNPLPLDVLVVDEASM--VDLPLMAKLLKAL---PPNTKLILLGD 294 (586)
T ss_pred ---hh-hhhccccccchhhhhhcccCCcchhhhcccCCCcccEEEEccccc--CCHHHHHHHHHhc---CCCCEEEEECC
Confidence 00 000001113333333321110 11233689999999985 6666655555543 45678887653
No 177
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=97.39 E-value=0.0018 Score=73.67 Aligned_cols=130 Identities=25% Similarity=0.281 Sum_probs=91.8
Q ss_pred CCeEEEEecCCCchhhhHHHHHHHHHHHHhcCCceEEEechhHHHHHHHHHHHHHHHhCCcccceeeeeeeeccccCCCc
Q 001817 313 NQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERGEKLGESVGYKVRLEGMKGRDT 392 (1009)
Q Consensus 313 ~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~IvvtqPrR~La~qva~rva~e~~~~~g~~vGy~vr~e~~~~~~t 392 (1009)
++++.++||||.||||.+.-......+. .......||-+=-.|+-|...-+..++.+|.++
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~-~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~------------------ 263 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVML-KKKKKVAIITTDTYRIGAVEQLKTYADIMGVPL------------------ 263 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhh-ccCcceEEEEeccchhhHHHHHHHHHHHhCCce------------------
Confidence 7899999999999998877655544422 223344555555778888887788877776542
Q ss_pred EEEEEccHHHHHHHhcCCCCCCccEEEEeCCCcCCCcchHHHHHHHHHcccCCCCc-EEEeccCCCHHHHHhhhC
Q 001817 393 RLMFCTTGILLRRLLVDRSLRGVTHVIVDEIHERGMNEDFLLIVLKELLPRRPELR-LILMSATLNAELFSSYFG 466 (1009)
Q Consensus 393 ~Iiv~T~g~Ll~~L~~~~~l~~is~IIIDEaHeR~~~~d~ll~llk~ll~~~~~lk-vIlmSATl~~~~~~~yf~ 466 (1009)
.++-+|.-|...+. .+.++++|.||=+- |+........-++.+.....++. .+.+|||...+++.+-+.
T Consensus 264 -~vv~~~~el~~ai~---~l~~~d~ILVDTaG-rs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K~~dlkei~~ 333 (407)
T COG1419 264 -EVVYSPKELAEAIE---ALRDCDVILVDTAG-RSQYDKEKIEELKELIDVSHSIEVYLVLSATTKYEDLKEIIK 333 (407)
T ss_pred -EEecCHHHHHHHHH---HhhcCCEEEEeCCC-CCccCHHHHHHHHHHHhccccceEEEEEecCcchHHHHHHHH
Confidence 24455655655554 57888999999999 77777777777888877554444 578999997777665543
No 178
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=97.37 E-value=0.00062 Score=83.35 Aligned_cols=111 Identities=20% Similarity=0.192 Sum_probs=79.6
Q ss_pred CCCcEEEEcCCHhHHHHHHHHHHcCCCCCCCCCeEEEEecCCCCHHHHHhhcC---CCCCCceEEEEecCccccccCCCC
Q 001817 576 RPGAVLVFMTGWDDINSLKDQLQAHPLLGDPSRVLLLACHGSMASSEQRLIFD---KPEDGVRKIVLATNMAETSITIND 652 (1009)
Q Consensus 576 ~~g~iLVFl~~~~~i~~l~~~L~~~~~~~~~~~~~v~~lHs~l~~~er~~v~~---~f~~G~~kVLVATniae~GIdIp~ 652 (1009)
.++.||.|+.-..-..-+..+|.-. ++...-+.|....++|-..++ .+.+-....|++|-....|+|+..
T Consensus 725 tgHRVLlF~qMTrlmdimEdyL~~~-------~~kYlRLDG~TK~~eRg~ll~~FN~Pds~yf~FllstragglglNlQt 797 (1157)
T KOG0386|consen 725 TGHRVLLFSQMTRLMDILEDYLQIR-------EYKYLRLDGQTKVEERGDLLEIFNAPDSPYFIFLLSTRAGGLGLNLQT 797 (1157)
T ss_pred cCcchhhHHHHHHHHHHHHHHHhhh-------hhheeeecCCcchhhHHHHHHHhcCCCCceeeeeeeecccccccchhh
Confidence 4679999998777677777777654 455667788888888876544 445567788999999999999998
Q ss_pred eeEEEeCCCCccccccCCCCCCcccccccCHHhHHhhhcccCCCC---CCcEEEecchhhhh
Q 001817 653 VVFVIDCGKAKETSYDALNNTPCLLPSWISKAAARQRRGRAGRVQ---PGECYHLYPRYVYD 711 (1009)
Q Consensus 653 V~~VId~g~~k~~~yd~~~~~~~l~~~~iS~as~~QR~GRAGR~~---~G~c~~Lys~~~~~ 711 (1009)
.+-||- ||+..+-. ...|+.-||-|.| .-.+++|.+-..++
T Consensus 798 adtvii--------fdsdwnp~----------~d~qaqdrahrigq~~evRv~rl~tv~sve 841 (1157)
T KOG0386|consen 798 ADTVII--------FDSDWNPH----------QDLQAQDRAHRIGQKKEVRVLRLITVNSVE 841 (1157)
T ss_pred cceEEE--------ecCCCCch----------hHHHHHHHHHHhhchhheeeeeeehhhHHH
Confidence 877776 66655444 3347777776664 46678887755543
No 179
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.33 E-value=0.0018 Score=74.14 Aligned_cols=127 Identities=23% Similarity=0.254 Sum_probs=76.6
Q ss_pred HHcCCeEEEEecCCCchhhhHHHHHHHHHHHHhcCC-ceEEEechhHHHHHHHHHHHHHHHhCCcccceeeeeeeecccc
Q 001817 310 ISENQVVVVSGETGCGKTTQLPQYILESETEAARGA-ACSIICTQPRRISAMAVSERVAAERGEKLGESVGYKVRLEGMK 388 (1009)
Q Consensus 310 l~~~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~-~~~IvvtqPrR~La~qva~rva~e~~~~~g~~vGy~vr~e~~~ 388 (1009)
+..+.+++++||||+||||.+.......... .+. ...++.+-+-|+.+.+..+.+++.+|..+
T Consensus 134 ~~~g~ii~lvGptGvGKTTtiakLA~~~~~~--~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~-------------- 197 (374)
T PRK14722 134 MERGGVFALMGPTGVGKTTTTAKLAARCVMR--FGASKVALLTTDSYRIGGHEQLRIFGKILGVPV-------------- 197 (374)
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHHHh--cCCCeEEEEecccccccHHHHHHHHHHHcCCce--------------
Confidence 4568899999999999999888776654432 222 22333333446666666666655544321
Q ss_pred CCCcEEEEEccHHHHHHHhcCCCCCCccEEEEeCCCcCCCcchHHHHHHHHHccc-CCCCcEEEeccCCCHHHH
Q 001817 389 GRDTRLMFCTTGILLRRLLVDRSLRGVTHVIVDEIHERGMNEDFLLIVLKELLPR-RPELRLILMSATLNAELF 461 (1009)
Q Consensus 389 ~~~t~Iiv~T~g~Ll~~L~~~~~l~~is~IIIDEaHeR~~~~d~ll~llk~ll~~-~~~lkvIlmSATl~~~~~ 461 (1009)
..+.+++.+...+. .+.+.++|+||++- |....+.+...+..+... .+.-.++++|||...+.+
T Consensus 198 -----~~~~~~~~l~~~l~---~l~~~DlVLIDTaG-~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l 262 (374)
T PRK14722 198 -----HAVKDGGDLQLALA---ELRNKHMVLIDTIG-MSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTL 262 (374)
T ss_pred -----EecCCcccHHHHHH---HhcCCCEEEEcCCC-CCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHH
Confidence 11222333333332 35567999999998 444455666666665432 234568899999865543
No 180
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=97.27 E-value=0.0014 Score=79.97 Aligned_cols=141 Identities=21% Similarity=0.234 Sum_probs=81.6
Q ss_pred CHHHHHHHHHHHHcCCeEEEEecCCCchhhhHHHHHHHHHHHHhcCCceEEEechhHHHHHHHHHHHHHHHhCCccccee
Q 001817 299 SYKERDALLKAISENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERGEKLGESV 378 (1009)
Q Consensus 299 i~~~q~~il~~l~~~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~IvvtqPrR~La~qva~rva~e~~~~~g~~v 378 (1009)
..+|+.++..++ .++.++|+|++|+||||.+...+.. +.....+....|+++.||.-+|..+.+.+..... .++.
T Consensus 154 ~d~Qk~Av~~a~-~~~~~vItGgpGTGKTt~v~~ll~~-l~~~~~~~~~~i~l~APTgkAA~rL~e~~~~~~~-~~~~-- 228 (615)
T PRK10875 154 VDWQKVAAAVAL-TRRISVISGGPGTGKTTTVAKLLAA-LIQLADGERCRIRLAAPTGKAAARLTESLGKALR-QLPL-- 228 (615)
T ss_pred CHHHHHHHHHHh-cCCeEEEEeCCCCCHHHHHHHHHHH-HHHhcCCCCcEEEEECCcHHHHHHHHHHHHhhhh-cccc--
Confidence 356666666655 6789999999999999887655433 2222223446788899999999988887754331 1110
Q ss_pred eeeeeeccccCCCcEEEEEccHHHHHHHhc-------CCCCCCccEEEEeCCCcCCCcchHHHHHHHHHcccCCCCcEEE
Q 001817 379 GYKVRLEGMKGRDTRLMFCTTGILLRRLLV-------DRSLRGVTHVIVDEIHERGMNEDFLLIVLKELLPRRPELRLIL 451 (1009)
Q Consensus 379 Gy~vr~e~~~~~~t~Iiv~T~g~Ll~~L~~-------~~~l~~is~IIIDEaHeR~~~~d~ll~llk~ll~~~~~lkvIl 451 (1009)
.. ... .....-..|--.|+..... ......+++|||||+-. ++...+..+++.+ .++.|+|+
T Consensus 229 ----~~-~~~-~~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIvDEaSM--vd~~lm~~ll~al---~~~~rlIl 297 (615)
T PRK10875 229 ----TD-EQK-KRIPEEASTLHRLLGAQPGSQRLRYHAGNPLHLDVLVVDEASM--VDLPMMARLIDAL---PPHARVIF 297 (615)
T ss_pred ----ch-hhh-hcCCCchHHHHHHhCcCCCccchhhccccCCCCCeEEEChHhc--ccHHHHHHHHHhc---ccCCEEEE
Confidence 00 000 0000012222222221110 01233568999999996 6666666666543 46778888
Q ss_pred eccC
Q 001817 452 MSAT 455 (1009)
Q Consensus 452 mSAT 455 (1009)
+-=.
T Consensus 298 vGD~ 301 (615)
T PRK10875 298 LGDR 301 (615)
T ss_pred ecch
Confidence 7543
No 181
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.24 E-value=0.0032 Score=73.92 Aligned_cols=129 Identities=23% Similarity=0.254 Sum_probs=74.4
Q ss_pred HcCCeEEEEecCCCchhhhHHHHHHHHHHHHhcCCceEEEechhHHHHHHHHHHHHHHHhCCcccceeeeeeeeccccCC
Q 001817 311 SENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERGEKLGESVGYKVRLEGMKGR 390 (1009)
Q Consensus 311 ~~~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~IvvtqPrR~La~qva~rva~e~~~~~g~~vGy~vr~e~~~~~ 390 (1009)
..+++++++||||+||||.+..+....... ..+....++-+-|-|..+.......+..++..+
T Consensus 219 ~~~~~i~~vGptGvGKTTt~~kLA~~~~~~-~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~---------------- 281 (424)
T PRK05703 219 KQGGVVALVGPTGVGKTTTLAKLAARYALL-YGKKKVALITLDTYRIGAVEQLKTYAKIMGIPV---------------- 281 (424)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHHHh-cCCCeEEEEECCccHHHHHHHHHHHHHHhCCce----------------
Confidence 457899999999999999887766543311 123344455555777766655555554444221
Q ss_pred CcEEEEEccHHHHHHHhcCCCCCCccEEEEeCCCcCCCcchHHHHHHHHHcc-c-CCCCcEEEeccCCCHHHHHh
Q 001817 391 DTRLMFCTTGILLRRLLVDRSLRGVTHVIVDEIHERGMNEDFLLIVLKELLP-R-RPELRLILMSATLNAELFSS 463 (1009)
Q Consensus 391 ~t~Iiv~T~g~Ll~~L~~~~~l~~is~IIIDEaHeR~~~~d~ll~llk~ll~-~-~~~lkvIlmSATl~~~~~~~ 463 (1009)
....++.-+...+. .+.++++||||.+-. .....-....++.++. . .+.-.++++|||.....+.+
T Consensus 282 ---~~~~~~~~l~~~l~---~~~~~DlVlIDt~G~-~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~~~l~~ 349 (424)
T PRK05703 282 ---EVVYDPKELAKALE---QLRDCDVILIDTAGR-SQRDKRLIEELKALIEFSGEPIDVYLVLSATTKYEDLKD 349 (424)
T ss_pred ---EccCCHHhHHHHHH---HhCCCCEEEEeCCCC-CCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCHHHHHH
Confidence 01123334444443 245789999999973 2222223333444443 2 33345788999996655543
No 182
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.22 E-value=0.003 Score=61.55 Aligned_cols=31 Identities=29% Similarity=0.370 Sum_probs=22.3
Q ss_pred HHHHHHHHc--CCeEEEEecCCCchhhhHHHHH
Q 001817 304 DALLKAISE--NQVVVVSGETGCGKTTQLPQYI 334 (1009)
Q Consensus 304 ~~il~~l~~--~~~vII~apTGSGKTt~~~~~i 334 (1009)
.++...+.. ++.++|.||+|+|||+.+-..+
T Consensus 8 ~~i~~~~~~~~~~~v~i~G~~G~GKT~l~~~i~ 40 (151)
T cd00009 8 EALREALELPPPKNLLLYGPPGTGKTTLARAIA 40 (151)
T ss_pred HHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHH
Confidence 445555555 7889999999999996554433
No 183
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=97.21 E-value=0.00092 Score=76.91 Aligned_cols=92 Identities=18% Similarity=0.246 Sum_probs=56.6
Q ss_pred CeEEEEecCCCchhhhHHHHHHHHHHHHhcCCceEEEechhHHHHHHHHHHHHHHHhCCcccceeeeeeeeccccCCCcE
Q 001817 314 QVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERGEKLGESVGYKVRLEGMKGRDTR 393 (1009)
Q Consensus 314 ~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~IvvtqPrR~La~qva~rva~e~~~~~g~~vGy~vr~e~~~~~~t~ 393 (1009)
++++|.|..|||||+.+...+.+. .....+. .++++.+...+...+.+.+.... ......
T Consensus 2 ~v~~I~G~aGTGKTvla~~l~~~l-~~~~~~~--~~~~l~~n~~l~~~l~~~l~~~~-----------------~~~~~~ 61 (352)
T PF09848_consen 2 QVILITGGAGTGKTVLALNLAKEL-QNSEEGK--KVLYLCGNHPLRNKLREQLAKKY-----------------NPKLKK 61 (352)
T ss_pred eEEEEEecCCcCHHHHHHHHHHHh-hccccCC--ceEEEEecchHHHHHHHHHhhhc-----------------ccchhh
Confidence 578999999999997776555443 1112233 34444488888888777775543 001112
Q ss_pred EEEEccHHHHHHHh-cCCCCCCccEEEEeCCCc
Q 001817 394 LMFCTTGILLRRLL-VDRSLRGVTHVIVDEIHE 425 (1009)
Q Consensus 394 Iiv~T~g~Ll~~L~-~~~~l~~is~IIIDEaHe 425 (1009)
..+..+..+...+. .......+++|||||||.
T Consensus 62 ~~~~~~~~~i~~~~~~~~~~~~~DviivDEAqr 94 (352)
T PF09848_consen 62 SDFRKPTSFINNYSESDKEKNKYDVIIVDEAQR 94 (352)
T ss_pred hhhhhhHHHHhhcccccccCCcCCEEEEehhHh
Confidence 23444444444332 334677899999999994
No 184
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.20 E-value=0.0039 Score=71.18 Aligned_cols=124 Identities=18% Similarity=0.237 Sum_probs=70.1
Q ss_pred CCeEEEEecCCCchhhhHHHHHHHHHHHHhcCCceEEEechhHHHHHHHHHHHHHHHhCCcccceeeeeeeeccccCCCc
Q 001817 313 NQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERGEKLGESVGYKVRLEGMKGRDT 392 (1009)
Q Consensus 313 ~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~IvvtqPrR~La~qva~rva~e~~~~~g~~vGy~vr~e~~~~~~t 392 (1009)
.+++.++||||+||||.+........ ..+....++-+=|-|+.+.+.-...++..+..
T Consensus 241 ~~vI~LVGptGvGKTTTiaKLA~~L~---~~GkkVglI~aDt~RiaAvEQLk~yae~lgip------------------- 298 (436)
T PRK11889 241 VQTIALIGPTGVGKTTTLAKMAWQFH---GKKKTVGFITTDHSRIGTVQQLQDYVKTIGFE------------------- 298 (436)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHH---HcCCcEEEEecCCcchHHHHHHHHHhhhcCCc-------------------
Confidence 47889999999999998877665422 23434444444466755554333333322211
Q ss_pred EEEEEccHHHHHHHhcCCCCCCccEEEEeCCCcCCCcchHHHHHHHHHcc-cCCCCcEEEeccCCCHH
Q 001817 393 RLMFCTTGILLRRLLVDRSLRGVTHVIVDEIHERGMNEDFLLIVLKELLP-RRPELRLILMSATLNAE 459 (1009)
Q Consensus 393 ~Iiv~T~g~Ll~~L~~~~~l~~is~IIIDEaHeR~~~~d~ll~llk~ll~-~~~~lkvIlmSATl~~~ 459 (1009)
-+...++..+.+.+..-..-.++++|+||-+- |.....-.+.-+..++. ..|+-.++.+|||....
T Consensus 299 v~v~~d~~~L~~aL~~lk~~~~~DvVLIDTaG-Rs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~~ 365 (436)
T PRK11889 299 VIAVRDEAAMTRALTYFKEEARVDYILIDTAG-KNYRASETVEEMIETMGQVEPDYICLTLSASMKSK 365 (436)
T ss_pred EEecCCHHHHHHHHHHHHhccCCCEEEEeCcc-ccCcCHHHHHHHHHHHhhcCCCeEEEEECCccChH
Confidence 11123566665555322222368999999998 43433333343444443 44555567799998543
No 185
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=97.13 E-value=0.00088 Score=74.79 Aligned_cols=68 Identities=16% Similarity=0.148 Sum_probs=49.7
Q ss_pred CHHHHHH----HHHHHHcCCeEEEEecCCCchhhhHHHHHHHHHHHHhcC-CceEEEechhHHHHHHHHHHHH
Q 001817 299 SYKERDA----LLKAISENQVVVVSGETGCGKTTQLPQYILESETEAARG-AACSIICTQPRRISAMAVSERV 366 (1009)
Q Consensus 299 i~~~q~~----il~~l~~~~~vII~apTGSGKTt~~~~~ile~~~~~~~~-~~~~IvvtqPrR~La~qva~rv 366 (1009)
.+..|.+ +...+.+++.+++.+|||+|||+.+..+++......+.. ...+|+++.+|..+..|....+
T Consensus 9 ~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l 81 (289)
T smart00488 9 PYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEEL 81 (289)
T ss_pred CCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHH
Confidence 3666666 666778899999999999999999998888665432221 1236777789988877765555
No 186
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=97.13 E-value=0.00088 Score=74.79 Aligned_cols=68 Identities=16% Similarity=0.148 Sum_probs=49.7
Q ss_pred CHHHHHH----HHHHHHcCCeEEEEecCCCchhhhHHHHHHHHHHHHhcC-CceEEEechhHHHHHHHHHHHH
Q 001817 299 SYKERDA----LLKAISENQVVVVSGETGCGKTTQLPQYILESETEAARG-AACSIICTQPRRISAMAVSERV 366 (1009)
Q Consensus 299 i~~~q~~----il~~l~~~~~vII~apTGSGKTt~~~~~ile~~~~~~~~-~~~~IvvtqPrR~La~qva~rv 366 (1009)
.+..|.+ +...+.+++.+++.+|||+|||+.+..+++......+.. ...+|+++.+|..+..|....+
T Consensus 9 ~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l 81 (289)
T smart00489 9 PYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEEL 81 (289)
T ss_pred CCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHH
Confidence 3666666 666778899999999999999999998888665432221 1236777789988877765555
No 187
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=97.12 E-value=0.0014 Score=82.21 Aligned_cols=139 Identities=17% Similarity=0.222 Sum_probs=79.1
Q ss_pred cCCeEEEEecCCCchhhhHHHHHHHHHHHHhcCCceEEEechhHHHHHHHHHHHHH-----HHhCCcccc-eeeeeeeec
Q 001817 312 ENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVA-----AERGEKLGE-SVGYKVRLE 385 (1009)
Q Consensus 312 ~~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~IvvtqPrR~La~qva~rva-----~e~~~~~g~-~vGy~vr~e 385 (1009)
.+.++.+..+||+|||..+.-.|++.... -...++|+++|+.+.-..+...+. ..+....+. .+-+.+-..
T Consensus 58 ~~~n~~~~M~TGtGKT~~~~~~i~~l~~~---~~~~~fii~vp~~aI~egv~~~l~s~~~k~hF~~~y~~~~~~~~~~~S 134 (986)
T PRK15483 58 DKANIDIKMETGTGKTYVYTRLMYELHQK---YGLFKFIIVVPTPAIKEGTRNFIQSDYAKQHFSQFYENTRIELYVINA 134 (986)
T ss_pred ccceEEEEeCCCCCHHHHHHHHHHHHHHH---cCCcEEEEEeCCHHHHHHHHHHhhHHHHHHHHHHHcCCceeEEEEEec
Confidence 34788999999999998888777765432 223567777799888777665543 222222221 122222111
Q ss_pred cc----------------------cCCCcEEEEEccHHHHHHHhc-----------C--C--CCCCc-cEEEEeCCCcCC
Q 001817 386 GM----------------------KGRDTRLMFCTTGILLRRLLV-----------D--R--SLRGV-THVIVDEIHERG 427 (1009)
Q Consensus 386 ~~----------------------~~~~t~Iiv~T~g~Ll~~L~~-----------~--~--~l~~i-s~IIIDEaHeR~ 427 (1009)
.. .....+|+++|.+.+-..... . | .+... -+||+||.|.
T Consensus 135 ~k~~k~gr~~~~~~i~~Fa~~~~~~~~~I~Ilv~niqa~n~~~~~~~~~D~~l~~g~~~p~~~i~~~~PivIiDEPh~-- 212 (986)
T PRK15483 135 GDKKKSGRKNFPAQLSNFVKASRQNSNTIHVLLINAGMLNSASMTRDDYDQTLLGGFTSPVDALAATRPVVIIDEPHR-- 212 (986)
T ss_pred CcccccccccChHHHHHHHhccccCCCceEEEEEehHHhcccccccchhhhhhccCCCChHHHHHhCCCEEEEECCCC--
Confidence 00 011468999999988653220 0 1 11111 3789999996
Q ss_pred CcchHHHHHHHHHcccCCCCcEEEeccCCCH
Q 001817 428 MNEDFLLIVLKELLPRRPELRLILMSATLNA 458 (1009)
Q Consensus 428 ~~~d~ll~llk~ll~~~~~lkvIlmSATl~~ 458 (1009)
++++- .-++.+...+|.. ++..|||.+.
T Consensus 213 ~~~~~--k~~~~i~~lnpl~-~lrysAT~~~ 240 (986)
T PRK15483 213 FPRDN--KFYQAIEALKPQM-IIRFGATFPD 240 (986)
T ss_pred CCcch--HHHHHHHhcCccc-EEEEeeecCC
Confidence 33321 1234444445544 6679999954
No 188
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=97.06 E-value=0.00052 Score=70.22 Aligned_cols=121 Identities=20% Similarity=0.196 Sum_probs=73.9
Q ss_pred CCCcEEEEcCCHhHHHHHHHHHHcCCCCCCCCCeEEEEecCCCCHHHHHhhcCCCCCCceEEEEecC--ccccccCCCC-
Q 001817 576 RPGAVLVFMTGWDDINSLKDQLQAHPLLGDPSRVLLLACHGSMASSEQRLIFDKPEDGVRKIVLATN--MAETSITIND- 652 (1009)
Q Consensus 576 ~~g~iLVFl~~~~~i~~l~~~L~~~~~~~~~~~~~v~~lHs~l~~~er~~v~~~f~~G~~kVLVATn--iae~GIdIp~- 652 (1009)
.+|.+|||+|+.+..+.+.+.+....... ++.+.. . ...+...+++.|+.+.-.||+|+. .+.+|||+|+
T Consensus 8 ~~g~~lv~f~Sy~~l~~~~~~~~~~~~~~---~~~v~~-q---~~~~~~~~l~~~~~~~~~il~~v~~g~~~EGiD~~~~ 80 (167)
T PF13307_consen 8 VPGGVLVFFPSYRRLEKVYERLKERLEEK---GIPVFV-Q---GSKSRDELLEEFKRGEGAILLAVAGGSFSEGIDFPGD 80 (167)
T ss_dssp CSSEEEEEESSHHHHHHHHTT-TSS-E-E---TSCEEE-S---TCCHHHHHHHHHCCSSSEEEEEETTSCCGSSS--ECE
T ss_pred CCCCEEEEeCCHHHHHHHHHHHHhhcccc---cceeee-c---CcchHHHHHHHHHhccCeEEEEEecccEEEeecCCCc
Confidence 45899999999999999999887642111 122222 2 245677788888889999999998 9999999995
Q ss_pred -eeEEEeCCCCccccccCCC-------------CCCcccccccCHHhHHhhhcccCCCCC--CcEEEe
Q 001817 653 -VVFVIDCGKAKETSYDALN-------------NTPCLLPSWISKAAARQRRGRAGRVQP--GECYHL 704 (1009)
Q Consensus 653 -V~~VId~g~~k~~~yd~~~-------------~~~~l~~~~iS~as~~QR~GRAGR~~~--G~c~~L 704 (1009)
++.||-.|+|-...-|+.. +... ...+-......|-+||+=|... |..+.|
T Consensus 81 ~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~-~~~~~a~~~l~Qa~GR~iR~~~D~g~i~ll 147 (167)
T PF13307_consen 81 LLRAVIIVGLPFPPPSDPLVQAKREYLDKQGKNPFRD-WYLPPAIRKLKQAIGRLIRSEDDYGVIILL 147 (167)
T ss_dssp SEEEEEEES-----TTCHHHHHHHHHHHHCCTTCHHH-HTHHHHHHHHHHHHHCC--STT-EEEEEEE
T ss_pred hhheeeecCCCCCCCCCHHHHHHHHHHHHHhccchhh-HhhHHHHHHHhhhcCcceeccCCcEEEEEE
Confidence 6889999999533322210 0111 1122233456799999999876 444444
No 189
>PRK06526 transposase; Provisional
Probab=97.03 E-value=0.0088 Score=65.44 Aligned_cols=29 Identities=24% Similarity=0.274 Sum_probs=22.9
Q ss_pred HHHHcCCeEEEEecCCCchhhhHHHHHHH
Q 001817 308 KAISENQVVVVSGETGCGKTTQLPQYILE 336 (1009)
Q Consensus 308 ~~l~~~~~vII~apTGSGKTt~~~~~ile 336 (1009)
+.+..+++++++||+|+|||+.+.....+
T Consensus 93 ~fi~~~~nlll~Gp~GtGKThLa~al~~~ 121 (254)
T PRK06526 93 DFVTGKENVVFLGPPGTGKTHLAIGLGIR 121 (254)
T ss_pred chhhcCceEEEEeCCCCchHHHHHHHHHH
Confidence 45677889999999999999776655443
No 190
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=96.99 E-value=0.0046 Score=65.69 Aligned_cols=135 Identities=16% Similarity=0.197 Sum_probs=86.8
Q ss_pred ChhhHHHHHhhcCCCCHHHHHHHHHHHHc---CCeEEEEecCCCchhhhHHHHHHHHHHHHhcCCceEEEechhHHHHHH
Q 001817 284 SPEGQKMLEFRRSLPSYKERDALLKAISE---NQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAM 360 (1009)
Q Consensus 284 ~~~~~~l~~~r~~LPi~~~q~~il~~l~~---~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~IvvtqPrR~La~ 360 (1009)
.|.+. +++...++=+...|.++...+.+ +.+.+.+.-.|.|||+++. |++...+.++ ...+.+++|. .|..
T Consensus 10 ~P~wL-l~E~e~~iliR~~Q~~ia~~mi~~~~~~n~v~QlnMGeGKTsVI~-Pmla~~LAdg---~~LvrviVpk-~Ll~ 83 (229)
T PF12340_consen 10 YPDWL-LFEIESNILIRPVQVEIAREMISPPSGKNSVMQLNMGEGKTSVIV-PMLALALADG---SRLVRVIVPK-ALLE 83 (229)
T ss_pred ChHHH-HHHHHcCceeeHHHHHHHHHHhCCCCCCCeEeeecccCCccchHH-HHHHHHHcCC---CcEEEEEcCH-HHHH
Confidence 45554 78888889899889999888865 4789999999999997654 4444444322 2344444465 5778
Q ss_pred HHHHHHHHHhCCcccceeeeeeeeccccC-----------------CCcEEEEEccHHHHHHHhc-------C-------
Q 001817 361 AVSERVAAERGEKLGESVGYKVRLEGMKG-----------------RDTRLMFCTTGILLRRLLV-------D------- 409 (1009)
Q Consensus 361 qva~rva~e~~~~~g~~vGy~vr~e~~~~-----------------~~t~Iiv~T~g~Ll~~L~~-------~------- 409 (1009)
|..+.+...+|.-++..+ |...|+.... ....|+++||+.++...+. .
T Consensus 84 q~~~~L~~~lg~l~~r~i-~~lpFsR~~~~~~~~~~~~~~l~~~~~~~~gill~~PEhilSf~L~~le~l~~~~~~~~~~ 162 (229)
T PF12340_consen 84 QMRQMLRSRLGGLLNRRI-YHLPFSRSTPLTPETLEKIRQLLEECMRSGGILLATPEHILSFKLKGLERLQDGKPEEARE 162 (229)
T ss_pred HHHHHHHHHHHHHhCCee-EEecccCCCCCCHHHHHHHHHHHHHHHHcCCEEEeChHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 888888777664444333 3444433222 3456999999877543221 1
Q ss_pred -----CCCCCccEEEEeCCCc
Q 001817 410 -----RSLRGVTHVIVDEIHE 425 (1009)
Q Consensus 410 -----~~l~~is~IIIDEaHe 425 (1009)
.++++...=|+||+|+
T Consensus 163 l~~~q~~l~~~~rdilDEsDe 183 (229)
T PF12340_consen 163 LLKIQKWLDEHSRDILDESDE 183 (229)
T ss_pred HHHHHHHHHhcCCeEeECchh
Confidence 1344555568899996
No 191
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.91 E-value=0.0059 Score=69.57 Aligned_cols=131 Identities=16% Similarity=0.221 Sum_probs=75.9
Q ss_pred cCCeEEEEecCCCchhhhHHHHHHHHHHHHhcCCceEEEechhHHHHHHHHHHHHHHHhCCcccceeeeeeeeccccCCC
Q 001817 312 ENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERGEKLGESVGYKVRLEGMKGRD 391 (1009)
Q Consensus 312 ~~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~IvvtqPrR~La~qva~rva~e~~~~~g~~vGy~vr~e~~~~~~ 391 (1009)
.+++++++||||+||||.+....... .. .+....++.+-|-|..|...-...++..+.. +
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l-~~--~g~~V~lItaDtyR~gAveQLk~yae~lgvp--------v--------- 264 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQL-LK--QNRTVGFITTDTFRSGAVEQFQGYADKLDVE--------L--------- 264 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH-HH--cCCeEEEEeCCccCccHHHHHHHHhhcCCCC--------E---------
Confidence 57789999999999998887766542 22 3444455555577776554433343322211 0
Q ss_pred cEEEEEccHHHHHHHhcCCCCCCccEEEEeCCCcCCCcchHHHHHHHHHcc-cCCCCcEEEeccCCCHHHHHhhh
Q 001817 392 TRLMFCTTGILLRRLLVDRSLRGVTHVIVDEIHERGMNEDFLLIVLKELLP-RRPELRLILMSATLNAELFSSYF 465 (1009)
Q Consensus 392 t~Iiv~T~g~Ll~~L~~~~~l~~is~IIIDEaHeR~~~~d~ll~llk~ll~-~~~~lkvIlmSATl~~~~~~~yf 465 (1009)
....+|.-+.+.+..-...+++++||||=+- |+...+-++.-++.+.. ..++.-++.+|||.......+.+
T Consensus 265 --~~~~dp~dL~~al~~l~~~~~~D~VLIDTAG-r~~~d~~~l~EL~~l~~~~~p~~~~LVLsag~~~~d~~~i~ 336 (407)
T PRK12726 265 --IVATSPAELEEAVQYMTYVNCVDHILIDTVG-RNYLAEESVSEISAYTDVVHPDLTCFTFSSGMKSADVMTIL 336 (407)
T ss_pred --EecCCHHHHHHHHHHHHhcCCCCEEEEECCC-CCccCHHHHHHHHHHhhccCCceEEEECCCcccHHHHHHHH
Confidence 0113455554444322234578999999997 33333334444454443 34555677889988665555543
No 192
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.91 E-value=0.0045 Score=73.31 Aligned_cols=129 Identities=20% Similarity=0.251 Sum_probs=69.0
Q ss_pred HHcCCeEEEEecCCCchhhhHHHHHHHHHHHHhcCCceEEEechhHHHHHHHHHHHHHHHhCCcccceeeeeeeeccccC
Q 001817 310 ISENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERGEKLGESVGYKVRLEGMKG 389 (1009)
Q Consensus 310 l~~~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~IvvtqPrR~La~qva~rva~e~~~~~g~~vGy~vr~e~~~~ 389 (1009)
+..+++++++||||+||||.+.......... ..+....++-+-+.|..+..........+ |..+.
T Consensus 347 l~~G~vIaLVGPtGvGKTTtaakLAa~la~~-~~gkkVaLIdtDtyRigA~EQLk~ya~iL--------gv~v~------ 411 (559)
T PRK12727 347 LERGGVIALVGPTGAGKTTTIAKLAQRFAAQ-HAPRDVALVTTDTQRVGGREQLHSYGRQL--------GIAVH------ 411 (559)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHHHHHHh-cCCCceEEEecccccccHHHHHHHhhccc--------CceeE------
Confidence 4568999999999999998887665543321 11223333434455665544333332211 21111
Q ss_pred CCcEEEEEccHHHHHHHhcCCCCCCccEEEEeCCCcCCCcchHHHHHHHHHcccCCCCcEEEeccCCCHHHHH
Q 001817 390 RDTRLMFCTTGILLRRLLVDRSLRGVTHVIVDEIHERGMNEDFLLIVLKELLPRRPELRLILMSATLNAELFS 462 (1009)
Q Consensus 390 ~~t~Iiv~T~g~Ll~~L~~~~~l~~is~IIIDEaHeR~~~~d~ll~llk~ll~~~~~lkvIlmSATl~~~~~~ 462 (1009)
...+++.+...+. .+.++++||||.+-. +.....+...+..+........+++++++.....+.
T Consensus 412 -----~a~d~~~L~~aL~---~l~~~DLVLIDTaG~-s~~D~~l~eeL~~L~aa~~~a~lLVLpAtss~~Dl~ 475 (559)
T PRK12727 412 -----EADSAESLLDLLE---RLRDYKLVLIDTAGM-GQRDRALAAQLNWLRAARQVTSLLVLPANAHFSDLD 475 (559)
T ss_pred -----ecCcHHHHHHHHH---HhccCCEEEecCCCc-chhhHHHHHHHHHHHHhhcCCcEEEEECCCChhHHH
Confidence 0112334444443 245789999999983 222233333333333223345688889998654443
No 193
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.88 E-value=0.0098 Score=68.82 Aligned_cols=123 Identities=20% Similarity=0.199 Sum_probs=73.3
Q ss_pred cCCeEEEEecCCCchhhhHHHHHHHHHHHHhcCCceEEEechhHHHHHHHHHHHHHHHhCCcccceeeeeeeeccccCCC
Q 001817 312 ENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERGEKLGESVGYKVRLEGMKGRD 391 (1009)
Q Consensus 312 ~~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~IvvtqPrR~La~qva~rva~e~~~~~g~~vGy~vr~e~~~~~~ 391 (1009)
.+.+++++||||+||||.+..++...... .+....++-.-+-|..+.....+.+...+..+.
T Consensus 222 ~~~vi~lvGptGvGKTTtaaKLA~~~~~~--~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~---------------- 283 (432)
T PRK12724 222 QRKVVFFVGPTGSGKTTSIAKLAAKYFLH--MGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFY---------------- 283 (432)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHh--cCCeEEEecccchhhhHHHHHHHHHHhcCCCee----------------
Confidence 35678899999999999999887654332 344444555557788887777776655443210
Q ss_pred cEEEEEccHHHHHHHhcCCCCCCccEEEEeCCCcCCCcchHHHHHHHHHccc----CCCCcEEEeccCCCHHH
Q 001817 392 TRLMFCTTGILLRRLLVDRSLRGVTHVIVDEIHERGMNEDFLLIVLKELLPR----RPELRLILMSATLNAEL 460 (1009)
Q Consensus 392 t~Iiv~T~g~Ll~~L~~~~~l~~is~IIIDEaHeR~~~~d~ll~llk~ll~~----~~~lkvIlmSATl~~~~ 460 (1009)
.+.....+...+. -.++++||||=+- |.....-.+.-+..++.. .+.-.++.+|||...+.
T Consensus 284 ---~~~~~~~l~~~l~----~~~~D~VLIDTaG-r~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~~ 348 (432)
T PRK12724 284 ---PVKDIKKFKETLA----RDGSELILIDTAG-YSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSYHH 348 (432)
T ss_pred ---ehHHHHHHHHHHH----hCCCCEEEEeCCC-CCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHHH
Confidence 0011233344443 2578999999876 332222333334443332 23346888999995543
No 194
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=96.88 E-value=0.00095 Score=73.01 Aligned_cols=103 Identities=20% Similarity=0.166 Sum_probs=62.6
Q ss_pred EEEecCCCchhhhHHHHHHHHHHHHhcCCceEEEechhHHHHHHHHHHHHHHHhCCcccceeeeeeeeccc----cCCCc
Q 001817 317 VVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERGEKLGESVGYKVRLEGM----KGRDT 392 (1009)
Q Consensus 317 II~apTGSGKTt~~~~~ile~~~~~~~~~~~~IvvtqPrR~La~qva~rva~e~~~~~g~~vGy~vr~e~~----~~~~t 392 (1009)
|+...||=|||+.+.++..-..+ .|..+-|+. ...-||..=++.+...+. .+|..||+....... ..-.+
T Consensus 94 laEm~TGEGKTli~~l~a~~~AL---~G~~V~vvT--~NdyLA~RD~~~~~~~y~-~LGlsv~~~~~~~~~~~r~~~Y~~ 167 (266)
T PF07517_consen 94 LAEMKTGEGKTLIAALPAALNAL---QGKGVHVVT--SNDYLAKRDAEEMRPFYE-FLGLSVGIITSDMSSEERREAYAA 167 (266)
T ss_dssp EEEESTTSHHHHHHHHHHHHHHT---TSS-EEEEE--SSHHHHHHHHHHHHHHHH-HTT--EEEEETTTEHHHHHHHHHS
T ss_pred eEEecCCCCcHHHHHHHHHHHHH---hcCCcEEEe--ccHHHhhccHHHHHHHHH-HhhhccccCccccCHHHHHHHHhC
Confidence 88999999999888776654443 455566666 555666655555544332 345556644332211 11246
Q ss_pred EEEEEccHHHHH-HHhc----CC---CCCCccEEEEeCCCc
Q 001817 393 RLMFCTTGILLR-RLLV----DR---SLRGVTHVIVDEIHE 425 (1009)
Q Consensus 393 ~Iiv~T~g~Ll~-~L~~----~~---~l~~is~IIIDEaHe 425 (1009)
+|+|+|.+.+.- .|.. .. ....+.++||||||.
T Consensus 168 dI~Y~t~~~~~fD~Lrd~~~~~~~~~~~r~~~~~ivDEvDs 208 (266)
T PF07517_consen 168 DIVYGTNSEFGFDYLRDNLALSKNEQVQRGFDFAIVDEVDS 208 (266)
T ss_dssp SEEEEEHHHHHHHHHHHTT-SSGGG--SSSSSEEEECTHHH
T ss_pred cccccccchhhHHHHHHHHhhccchhccCCCCEEEEeccce
Confidence 799999977643 3322 11 357889999999994
No 195
>PF05729 NACHT: NACHT domain
Probab=96.87 E-value=0.0028 Score=63.79 Aligned_cols=59 Identities=25% Similarity=0.362 Sum_probs=37.5
Q ss_pred EEEEeCCCcCCCcch-----HHHHHHHHHccc--CCCCcEEEeccCCCHHHHHhhhCCCCeeccCC
Q 001817 417 HVIVDEIHERGMNED-----FLLIVLKELLPR--RPELRLILMSATLNAELFSSYFGGAPMLHIPG 475 (1009)
Q Consensus 417 ~IIIDEaHeR~~~~d-----~ll~llk~ll~~--~~~lkvIlmSATl~~~~~~~yf~~~pvi~i~g 475 (1009)
+||||=++|-..... .....+..++.. .++.++++.|.+-....+.+++.....+.+++
T Consensus 84 llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~ 149 (166)
T PF05729_consen 84 LLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEP 149 (166)
T ss_pred EEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECC
Confidence 488888887433222 244555555554 67889888887766666777776654555544
No 196
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=96.83 E-value=0.006 Score=76.45 Aligned_cols=127 Identities=26% Similarity=0.236 Sum_probs=75.9
Q ss_pred cCCCCHHHHHHHHHHHHcCCeEEEEecCCCchhhhHHHHHHHHHHHHhcCCceEEEechhHHHHHHHHHHHHHHHhCCcc
Q 001817 295 RSLPSYKERDALLKAISENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERGEKL 374 (1009)
Q Consensus 295 ~~LPi~~~q~~il~~l~~~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~IvvtqPrR~La~qva~rva~e~~~~~ 374 (1009)
........|.+.+..+..++.++|.|+.|+||||.+- .+++.+.. .+....|++++||--+|..+.+ ..|...
T Consensus 320 ~~~~l~~~Q~~Ai~~~~~~~~~iitGgpGTGKTt~l~-~i~~~~~~--~~~~~~v~l~ApTg~AA~~L~e----~~g~~a 392 (720)
T TIGR01448 320 LRKGLSEEQKQALDTAIQHKVVILTGGPGTGKTTITR-AIIELAEE--LGGLLPVGLAAPTGRAAKRLGE----VTGLTA 392 (720)
T ss_pred cCCCCCHHHHHHHHHHHhCCeEEEECCCCCCHHHHHH-HHHHHHHH--cCCCceEEEEeCchHHHHHHHH----hcCCcc
Confidence 3455566677777777888999999999999997764 33443322 1222467778899888765443 222110
Q ss_pred cceeeeeeeeccccCCCcEEEEEccHHHHHHHh------cCCCCCCccEEEEeCCCcCCCcchHHHHHHHHHcccCCCCc
Q 001817 375 GESVGYKVRLEGMKGRDTRLMFCTTGILLRRLL------VDRSLRGVTHVIVDEIHERGMNEDFLLIVLKELLPRRPELR 448 (1009)
Q Consensus 375 g~~vGy~vr~e~~~~~~t~Iiv~T~g~Ll~~L~------~~~~l~~is~IIIDEaHeR~~~~d~ll~llk~ll~~~~~lk 448 (1009)
.|-..++.... ........++|||||++. ++...+..+++.+ .++.|
T Consensus 393 ----------------------~Tih~lL~~~~~~~~~~~~~~~~~~~llIvDEaSM--vd~~~~~~Ll~~~---~~~~r 445 (720)
T TIGR01448 393 ----------------------STIHRLLGYGPDTFRHNHLEDPIDCDLLIVDESSM--MDTWLALSLLAAL---PDHAR 445 (720)
T ss_pred ----------------------ccHHHHhhccCCccchhhhhccccCCEEEEecccc--CCHHHHHHHHHhC---CCCCE
Confidence 11111111100 001124578999999996 6666666655532 35678
Q ss_pred EEEeccC
Q 001817 449 LILMSAT 455 (1009)
Q Consensus 449 vIlmSAT 455 (1009)
+|++--+
T Consensus 446 lilvGD~ 452 (720)
T TIGR01448 446 LLLVGDT 452 (720)
T ss_pred EEEECcc
Confidence 8886544
No 197
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=96.71 E-value=0.0058 Score=70.66 Aligned_cols=109 Identities=20% Similarity=0.337 Sum_probs=63.7
Q ss_pred HHHHHHHHH------HcCCeEEEEecCCCchhhhHHHHHHHHHHHHhcCCceEEEechhHHHHHHHH--HHHHHHHhCCc
Q 001817 302 ERDALLKAI------SENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAV--SERVAAERGEK 373 (1009)
Q Consensus 302 ~q~~il~~l------~~~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~IvvtqPrR~La~qv--a~rva~e~~~~ 373 (1009)
.|+.+++.+ ..+.++.|.|+-|+|||+.+-.+ .+ .-+..+..+++++||-++|..+ ...+...++..
T Consensus 5 eQ~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~~~i-~~----~~~~~~~~~~~~a~tg~AA~~i~~G~T~hs~f~i~ 79 (364)
T PF05970_consen 5 EQRRVFDTVIEAIENEEGLNFFVTGPAGTGKSFLIKAI-ID----YLRSRGKKVLVTAPTGIAAFNIPGGRTIHSFFGIP 79 (364)
T ss_pred HHHHHHHHHHHHHHccCCcEEEEEcCCCCChhHHHHHH-HH----HhccccceEEEecchHHHHHhccCCcchHHhcCcc
Confidence 455565555 67889999999999999544322 22 2233456788999999999887 44454444433
Q ss_pred ccceeeeeeeeccccCCCcEEEEEccHHHHHHHhcCCCCCCccEEEEeCCCcCCCcchHHHH
Q 001817 374 LGESVGYKVRLEGMKGRDTRLMFCTTGILLRRLLVDRSLRGVTHVIVDEIHERGMNEDFLLI 435 (1009)
Q Consensus 374 ~g~~vGy~vr~e~~~~~~t~Iiv~T~g~Ll~~L~~~~~l~~is~IIIDEaHeR~~~~d~ll~ 435 (1009)
++.. . ....-+.....+. ..+.+.++|||||+=. +..+.+..
T Consensus 80 ~~~~--------~----~~~~~~~~~~~~~------~~l~~~~~lIiDEism--~~~~~l~~ 121 (364)
T PF05970_consen 80 INNN--------E----KSQCKISKNSRLR------ERLRKADVLIIDEISM--VSADMLDA 121 (364)
T ss_pred cccc--------c----cccccccccchhh------hhhhhheeeecccccc--hhHHHHHH
Confidence 2211 0 0000000001111 1577889999999984 44444333
No 198
>PRK14974 cell division protein FtsY; Provisional
Probab=96.69 E-value=0.0097 Score=67.58 Aligned_cols=125 Identities=22% Similarity=0.286 Sum_probs=66.3
Q ss_pred CCeEEEEecCCCchhhhHHHHHHHHHHHHhcCCceEEEechhHHHHHHHHHHHHHHHhCCcccceeeeeeeeccccCCCc
Q 001817 313 NQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERGEKLGESVGYKVRLEGMKGRDT 392 (1009)
Q Consensus 313 ~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~IvvtqPrR~La~qva~rva~e~~~~~g~~vGy~vr~e~~~~~~t 392 (1009)
..+++++|++|+||||.+...... +.. .+....++-.-+.|..+....+..+..+|..+.. + ....++
T Consensus 140 ~~vi~~~G~~GvGKTTtiakLA~~-l~~--~g~~V~li~~Dt~R~~a~eqL~~~a~~lgv~v~~--~-------~~g~dp 207 (336)
T PRK14974 140 PVVIVFVGVNGTGKTTTIAKLAYY-LKK--NGFSVVIAAGDTFRAGAIEQLEEHAERLGVKVIK--H-------KYGADP 207 (336)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHH-HHH--cCCeEEEecCCcCcHHHHHHHHHHHHHcCCceec--c-------cCCCCH
Confidence 468899999999999887665532 222 2322222222244565554445555555543211 0 000110
Q ss_pred EEEEEccHHHHHHHhcCCCCCCccEEEEeCCCcCCCcchHHHHHHHHHcc-cCCCCcEEEeccCCC
Q 001817 393 RLMFCTTGILLRRLLVDRSLRGVTHVIVDEIHERGMNEDFLLIVLKELLP-RRPELRLILMSATLN 457 (1009)
Q Consensus 393 ~Iiv~T~g~Ll~~L~~~~~l~~is~IIIDEaHeR~~~~d~ll~llk~ll~-~~~~lkvIlmSATl~ 457 (1009)
..++.+.+.. ....++++||||.++. .....-++.-|+.+.. ..|+..++.++||..
T Consensus 208 ------~~v~~~ai~~-~~~~~~DvVLIDTaGr-~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g 265 (336)
T PRK14974 208 ------AAVAYDAIEH-AKARGIDVVLIDTAGR-MHTDANLMDELKKIVRVTKPDLVIFVGDALAG 265 (336)
T ss_pred ------HHHHHHHHHH-HHhCCCCEEEEECCCc-cCCcHHHHHHHHHHHHhhCCceEEEeeccccc
Confidence 0112221111 1234678999999994 3333333444455433 457888899999984
No 199
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=96.68 E-value=0.0034 Score=66.98 Aligned_cols=68 Identities=18% Similarity=0.283 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHcCCe-EEEEecCCCchhhhHHHHHHHHHH---HHhcCCceEEEechhHHHHHHHHHHHHHH
Q 001817 301 KERDALLKAISENQV-VVVSGETGCGKTTQLPQYILESET---EAARGAACSIICTQPRRISAMAVSERVAA 368 (1009)
Q Consensus 301 ~~q~~il~~l~~~~~-vII~apTGSGKTt~~~~~ile~~~---~~~~~~~~~IvvtqPrR~La~qva~rva~ 368 (1009)
..|.+.+..+..... .+|.||.|||||+.+...+..... ........+|+++.|+..++..+.+++.+
T Consensus 4 ~~Q~~Ai~~~~~~~~~~~i~GpPGTGKT~~l~~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 4 ESQREAIQSALSSNGITLIQGPPGTGKTTTLASIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp HHHHHHHHHHCTSSE-EEEE-STTSSHHHHHHHHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHcCCCCEEEECCCCCChHHHHHHHHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence 345555566666665 999999999999877765554311 01234567888889999999999999876
No 200
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=96.64 E-value=0.012 Score=74.15 Aligned_cols=122 Identities=20% Similarity=0.202 Sum_probs=72.8
Q ss_pred CCCHHHHHHHHHHHHc-CCeEEEEecCCCchhhhHHHHHHHHHHHHhcCCceEEEechhHHHHHHHHHHHHHHHhCCccc
Q 001817 297 LPSYKERDALLKAISE-NQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERGEKLG 375 (1009)
Q Consensus 297 LPi~~~q~~il~~l~~-~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~IvvtqPrR~La~qva~rva~e~~~~~g 375 (1009)
......|.+.+..+.. ++.++|.|+.|+||||.+-. +.+.+.. .+..|++++||--+|..+.+. .|..
T Consensus 351 ~~Ls~~Q~~Av~~i~~s~~~~il~G~aGTGKTtll~~-i~~~~~~----~g~~V~~~ApTg~Aa~~L~~~----~g~~-- 419 (744)
T TIGR02768 351 YRLSEEQYEAVRHVTGSGDIAVVVGRAGTGKSTMLKA-AREAWEA----AGYRVIGAALSGKAAEGLQAE----SGIE-- 419 (744)
T ss_pred CCCCHHHHHHHHHHhcCCCEEEEEecCCCCHHHHHHH-HHHHHHh----CCCeEEEEeCcHHHHHHHHhc----cCCc--
Confidence 3344555555666655 68999999999999977554 3333322 235688888998777665432 1110
Q ss_pred ceeeeeeeeccccCCCcEEEEEccHHHHHHHhcC-CCCCCccEEEEeCCCcCCCcchHHHHHHHHHcccCCCCcEEEec
Q 001817 376 ESVGYKVRLEGMKGRDTRLMFCTTGILLRRLLVD-RSLRGVTHVIVDEIHERGMNEDFLLIVLKELLPRRPELRLILMS 453 (1009)
Q Consensus 376 ~~vGy~vr~e~~~~~~t~Iiv~T~g~Ll~~L~~~-~~l~~is~IIIDEaHeR~~~~d~ll~llk~ll~~~~~lkvIlmS 453 (1009)
-.|-..++..+..+ ..+...++|||||+-. +..+.+..+++.... .+.|+|++-
T Consensus 420 --------------------a~Ti~~~~~~~~~~~~~~~~~~llIvDEasM--v~~~~~~~Ll~~~~~--~~~kliLVG 474 (744)
T TIGR02768 420 --------------------SRTLASLEYAWANGRDLLSDKDVLVIDEAGM--VGSRQMARVLKEAEE--AGAKVVLVG 474 (744)
T ss_pred --------------------eeeHHHHHhhhccCcccCCCCcEEEEECccc--CCHHHHHHHHHHHHh--cCCEEEEEC
Confidence 01222222222222 2466889999999996 666666666554432 456777765
No 201
>PRK08181 transposase; Validated
Probab=96.62 E-value=0.026 Score=62.20 Aligned_cols=116 Identities=14% Similarity=0.155 Sum_probs=61.8
Q ss_pred HHHHcCCeEEEEecCCCchhhhHHHHHHHHHHHHhcCCceEEEechhHHHHHHHHHHHHHHHhCCcccceeeeeeeeccc
Q 001817 308 KAISENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERGEKLGESVGYKVRLEGM 387 (1009)
Q Consensus 308 ~~l~~~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~IvvtqPrR~La~qva~rva~e~~~~~g~~vGy~vr~e~~ 387 (1009)
..+..+++++++||+|+|||..+..+.. .+.. . +..++++ +...+..++.... .
T Consensus 101 ~~~~~~~nlll~Gp~GtGKTHLa~Aia~-~a~~--~--g~~v~f~-~~~~L~~~l~~a~----~---------------- 154 (269)
T PRK08181 101 SWLAKGANLLLFGPPGGGKSHLAAAIGL-ALIE--N--GWRVLFT-RTTDLVQKLQVAR----R---------------- 154 (269)
T ss_pred HHHhcCceEEEEecCCCcHHHHHHHHHH-HHHH--c--CCceeee-eHHHHHHHHHHHH----h----------------
Confidence 3567889999999999999966554433 3322 2 2344543 3333444432110 0
Q ss_pred cCCCcEEEEEccHHHHHHHhcCCCCCCccEEEEeCCCcCCCcch---HHHHHHHHHcccCCCCcEEEeccCCCHHHHHhh
Q 001817 388 KGRDTRLMFCTTGILLRRLLVDRSLRGVTHVIVDEIHERGMNED---FLLIVLKELLPRRPELRLILMSATLNAELFSSY 464 (1009)
Q Consensus 388 ~~~~t~Iiv~T~g~Ll~~L~~~~~l~~is~IIIDEaHeR~~~~d---~ll~llk~ll~~~~~lkvIlmSATl~~~~~~~y 464 (1009)
. .+...+++. +.++++|||||++....... .+..++..... . +-+++|.-.+.+.+...
T Consensus 155 --~------~~~~~~l~~------l~~~dLLIIDDlg~~~~~~~~~~~Lf~lin~R~~---~-~s~IiTSN~~~~~w~~~ 216 (269)
T PRK08181 155 --E------LQLESAIAK------LDKFDLLILDDLAYVTKDQAETSVLFELISARYE---R-RSILITANQPFGEWNRV 216 (269)
T ss_pred --C------CcHHHHHHH------HhcCCEEEEeccccccCCHHHHHHHHHHHHHHHh---C-CCEEEEcCCCHHHHHHh
Confidence 0 011123332 45778999999995333222 33333333222 2 23555666667777777
Q ss_pred hCC
Q 001817 465 FGG 467 (1009)
Q Consensus 465 f~~ 467 (1009)
|++
T Consensus 217 ~~D 219 (269)
T PRK08181 217 FPD 219 (269)
T ss_pred cCC
Confidence 654
No 202
>PRK04296 thymidine kinase; Provisional
Probab=96.61 E-value=0.014 Score=60.96 Aligned_cols=98 Identities=17% Similarity=0.286 Sum_probs=53.0
Q ss_pred CCeEEEEecCCCchhhhHHHHHHHHHHHHhcCCceEEEechhH---HHHHHHHHHHHHHHhCCcccceeeeeeeeccccC
Q 001817 313 NQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPR---RISAMAVSERVAAERGEKLGESVGYKVRLEGMKG 389 (1009)
Q Consensus 313 ~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~IvvtqPr---R~La~qva~rva~e~~~~~g~~vGy~vr~e~~~~ 389 (1009)
+...++.||+|+||||.+...+..... .+ .+++++-|. +.....++ . ..|...
T Consensus 2 g~i~litG~~GsGKTT~~l~~~~~~~~---~g--~~v~i~k~~~d~~~~~~~i~----~--------~lg~~~------- 57 (190)
T PRK04296 2 AKLEFIYGAMNSGKSTELLQRAYNYEE---RG--MKVLVFKPAIDDRYGEGKVV----S--------RIGLSR------- 57 (190)
T ss_pred cEEEEEECCCCCHHHHHHHHHHHHHHH---cC--CeEEEEeccccccccCCcEe----c--------CCCCcc-------
Confidence 457899999999999999888765432 22 345544341 21111111 1 111100
Q ss_pred CCcEEEEEccHHHHHHHhcCCCCCCccEEEEeCCCcCCCcchHHHHHHHHH
Q 001817 390 RDTRLMFCTTGILLRRLLVDRSLRGVTHVIVDEIHERGMNEDFLLIVLKEL 440 (1009)
Q Consensus 390 ~~t~Iiv~T~g~Ll~~L~~~~~l~~is~IIIDEaHeR~~~~d~ll~llk~l 440 (1009)
..+.+.....+++.+.. .-.++++|||||+|- +..+.+..+++.+
T Consensus 58 --~~~~~~~~~~~~~~~~~--~~~~~dvviIDEaq~--l~~~~v~~l~~~l 102 (190)
T PRK04296 58 --EAIPVSSDTDIFELIEE--EGEKIDCVLIDEAQF--LDKEQVVQLAEVL 102 (190)
T ss_pred --cceEeCChHHHHHHHHh--hCCCCCEEEEEcccc--CCHHHHHHHHHHH
Confidence 00123344555655544 335789999999984 4444344455444
No 203
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=96.60 E-value=0.014 Score=74.83 Aligned_cols=125 Identities=19% Similarity=0.164 Sum_probs=74.7
Q ss_pred CCCCHHHHHHHHHHHHc-CCeEEEEecCCCchhhhHHHHHHHHHHHHhcCCceEEEechhHHHHHHHHHHHHHHHhCCcc
Q 001817 296 SLPSYKERDALLKAISE-NQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERGEKL 374 (1009)
Q Consensus 296 ~LPi~~~q~~il~~l~~-~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~IvvtqPrR~La~qva~rva~e~~~~~ 374 (1009)
.+.....|.+.+..+.. ++.++|+|..|+||||.. ..+.+.+.. .+..|+.++||-.+|..+.+ ..
T Consensus 344 g~~Ls~eQr~Av~~il~s~~v~vv~G~AGTGKTT~l-~~~~~~~e~----~G~~V~~~ApTGkAA~~L~e----~t---- 410 (988)
T PRK13889 344 GLVLSGEQADALAHVTDGRDLGVVVGYAGTGKSAML-GVAREAWEA----AGYEVRGAALSGIAAENLEG----GS---- 410 (988)
T ss_pred CCCCCHHHHHHHHHHhcCCCeEEEEeCCCCCHHHHH-HHHHHHHHH----cCCeEEEecCcHHHHHHHhh----cc----
Confidence 34455555666665555 668899999999999864 344443322 24568888899877765532 11
Q ss_pred cceeeeeeeeccccCCCcEEEEEccHHHHHHHhcC-CCCCCccEEEEeCCCcCCCcchHHHHHHHHHcccCCCCcEEEec
Q 001817 375 GESVGYKVRLEGMKGRDTRLMFCTTGILLRRLLVD-RSLRGVTHVIVDEIHERGMNEDFLLIVLKELLPRRPELRLILMS 453 (1009)
Q Consensus 375 g~~vGy~vr~e~~~~~~t~Iiv~T~g~Ll~~L~~~-~~l~~is~IIIDEaHeR~~~~d~ll~llk~ll~~~~~lkvIlmS 453 (1009)
|.. -.|-..++.....+ ..+...++|||||+-. +.+..+..+++... ....|+|++-
T Consensus 411 ----Gi~--------------a~TI~sll~~~~~~~~~l~~~~vlIVDEASM--v~~~~m~~LL~~a~--~~garvVLVG 468 (988)
T PRK13889 411 ----GIA--------------SRTIASLEHGWGQGRDLLTSRDVLVIDEAGM--VGTRQLERVLSHAA--DAGAKVVLVG 468 (988)
T ss_pred ----Ccc--------------hhhHHHHHhhhcccccccccCcEEEEECccc--CCHHHHHHHHHhhh--hCCCEEEEEC
Confidence 110 01222232211111 2466778999999995 66766666665543 3467888875
Q ss_pred cC
Q 001817 454 AT 455 (1009)
Q Consensus 454 AT 455 (1009)
=+
T Consensus 469 D~ 470 (988)
T PRK13889 469 DP 470 (988)
T ss_pred CH
Confidence 44
No 204
>PHA03333 putative ATPase subunit of terminase; Provisional
Probab=96.50 E-value=0.069 Score=64.77 Aligned_cols=163 Identities=18% Similarity=0.167 Sum_probs=98.5
Q ss_pred HHhhcCCCCHHHHHHHHHHHH--cCCeEEEEecCCCchhhhHHHHHHHHHHHHhcCCceEEEechhHHHHHHHHHHHHHH
Q 001817 291 LEFRRSLPSYKERDALLKAIS--ENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAA 368 (1009)
Q Consensus 291 ~~~r~~LPi~~~q~~il~~l~--~~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~IvvtqPrR~La~qva~rva~ 368 (1009)
..+....|...-.++|=+.+. +.+-.++.+|=|.|||+.+.+++...+.. .+.+|++++|+...+.++.+++..
T Consensus 163 ~~~np~~~~~~~~~~id~~~~~fkq~~tV~taPRqrGKS~iVgi~l~~La~f----~Gi~IlvTAH~~~ts~evF~rv~~ 238 (752)
T PHA03333 163 VAFNPEAPSPRTLREIDRIFDEYGKCYTAATVPRRCGKTTIMAIILAAMISF----LEIDIVVQAQRKTMCLTLYNRVET 238 (752)
T ss_pred hhcCcCCCChhhHHHHHHHHHHHhhcceEEEeccCCCcHHHHHHHHHHHHHh----cCCeEEEECCChhhHHHHHHHHHH
Confidence 344445555544444433332 34567778999999998887766643321 236899999999999999888776
Q ss_pred HhCC--------cccceee-----eeeeeccccC---CCcEEEEEccHHHHHHHhcCCCCCCccEEEEeCCCcCCCcchH
Q 001817 369 ERGE--------KLGESVG-----YKVRLEGMKG---RDTRLMFCTTGILLRRLLVDRSLRGVTHVIVDEIHERGMNEDF 432 (1009)
Q Consensus 369 e~~~--------~~g~~vG-----y~vr~e~~~~---~~t~Iiv~T~g~Ll~~L~~~~~l~~is~IIIDEaHeR~~~~d~ 432 (1009)
.+.. ..+..+. -.+++..... ..+.|.|++.+. +...-..++++|+|||+. +..+.
T Consensus 239 ~le~lg~~~~fp~~~~iv~vkgg~E~I~f~~p~gak~G~sti~F~Ars~------~s~RG~~~DLLIVDEAAf--I~~~~ 310 (752)
T PHA03333 239 VVHAYQHKPWFPEEFKIVTLKGTDENLEYISDPAAKEGKTTAHFLASSP------NAARGQNPDLVIVDEAAF--VNPGA 310 (752)
T ss_pred HHHHhccccccCCCceEEEeeCCeeEEEEecCcccccCcceeEEecccC------CCcCCCCCCEEEEECccc--CCHHH
Confidence 6531 1111111 0111111111 114566654431 111223568999999997 66677
Q ss_pred HHHHHHHHcccCCCCcEEEeccCCCHHHHHhhhCC
Q 001817 433 LLIVLKELLPRRPELRLILMSATLNAELFSSYFGG 467 (1009)
Q Consensus 433 ll~llk~ll~~~~~lkvIlmSATl~~~~~~~yf~~ 467 (1009)
+..++--+.. .+.++|++|-+-+.+.+..++++
T Consensus 311 l~aIlP~l~~--~~~k~IiISS~~~~~s~tS~L~n 343 (752)
T PHA03333 311 LLSVLPLMAV--KGTKQIHISSPVDADSWISRVGE 343 (752)
T ss_pred HHHHHHHHcc--CCCceEEEeCCCCcchHHHHhhh
Confidence 7776655544 35679999999877777776654
No 205
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=96.46 E-value=0.0047 Score=69.27 Aligned_cols=68 Identities=19% Similarity=0.199 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHcCCeEEEEecCCCchhhhHHHHHHHHHHHHhcCCceEEEechhHHHHHHHHHHHHHHHhC
Q 001817 301 KERDALLKAISENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERG 371 (1009)
Q Consensus 301 ~~q~~il~~l~~~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~IvvtqPrR~La~qva~rva~e~~ 371 (1009)
..|.+++.. .++.++|.|..|||||+.+..-++..+. .+......|+|+.+|+.+|.++.+|+...++
T Consensus 3 ~eQ~~~i~~--~~~~~lV~a~AGSGKT~~l~~ri~~ll~-~~~~~~~~Il~lTft~~aa~e~~~ri~~~l~ 70 (315)
T PF00580_consen 3 DEQRRIIRS--TEGPLLVNAGAGSGKTTTLLERIAYLLY-EGGVPPERILVLTFTNAAAQEMRERIRELLE 70 (315)
T ss_dssp HHHHHHHHS---SSEEEEEE-TTSSHHHHHHHHHHHHHH-TSSSTGGGEEEEESSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhC--CCCCEEEEeCCCCCchHHHHHHHHHhhc-cccCChHHheecccCHHHHHHHHHHHHHhcC
Confidence 456666665 6788999999999999988776665443 2323456799999999999999999988654
No 206
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=96.38 E-value=0.019 Score=63.39 Aligned_cols=140 Identities=18% Similarity=0.167 Sum_probs=76.8
Q ss_pred cCCeEEEEecCCCchhhhHHHHHHHHHHHHhcCCceEEEechhHHHHHHHHHHHHHHHhCCcccceee-eeeeeccccCC
Q 001817 312 ENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERGEKLGESVG-YKVRLEGMKGR 390 (1009)
Q Consensus 312 ~~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~IvvtqPrR~La~qva~rva~e~~~~~g~~vG-y~vr~e~~~~~ 390 (1009)
.+.-.++--.||.||--++.-.|++..+. |...-|.++ ..-.|-....+.+...-+..+ .... ..........-
T Consensus 61 ~R~Gf~lGDGtGvGKGR~iAgiI~~n~l~---Gr~r~vwvS-~s~dL~~Da~RDl~DIG~~~i-~v~~l~~~~~~~~~~~ 135 (303)
T PF13872_consen 61 SRAGFFLGDGTGVGKGRQIAGIILENWLR---GRKRAVWVS-VSNDLKYDAERDLRDIGADNI-PVHPLNKFKYGDIIRL 135 (303)
T ss_pred cCcEEEeccCCCcCccchhHHHHHHHHHc---CCCceEEEE-CChhhhhHHHHHHHHhCCCcc-cceechhhccCcCCCC
Confidence 34567777899999999999999988763 333334444 455555554444533222111 1111 01111111122
Q ss_pred CcEEEEEccHHHHHHHhcCC-----------CC--CCccEEEEeCCCcC-CCcch-----HHHHHHHHHcccCCCCcEEE
Q 001817 391 DTRLMFCTTGILLRRLLVDR-----------SL--RGVTHVIVDEIHER-GMNED-----FLLIVLKELLPRRPELRLIL 451 (1009)
Q Consensus 391 ~t~Iiv~T~g~Ll~~L~~~~-----------~l--~~is~IIIDEaHeR-~~~~d-----~ll~llk~ll~~~~~lkvIl 451 (1009)
...|+|+|...|...-.... |+ +-=.+||+||||+- +.... -.-.....+....|+.|++-
T Consensus 136 ~~GvlF~TYs~L~~~~~~~~~~~sRl~ql~~W~g~dfdgvivfDEcH~akn~~~~~~~~sk~g~avl~LQ~~LP~ARvvY 215 (303)
T PF13872_consen 136 KEGVLFSTYSTLISESQSGGKYRSRLDQLVDWCGEDFDGVIVFDECHKAKNLSSGSKKPSKTGIAVLELQNRLPNARVVY 215 (303)
T ss_pred CCCccchhHHHHHhHHhccCCccchHHHHHHHHhcCCCceEEeccchhcCCCCccCccccHHHHHHHHHHHhCCCCcEEE
Confidence 34599999988776543211 11 11248999999952 12110 11112223444558889999
Q ss_pred eccCC
Q 001817 452 MSATL 456 (1009)
Q Consensus 452 mSATl 456 (1009)
+|||-
T Consensus 216 ~SATg 220 (303)
T PF13872_consen 216 ASATG 220 (303)
T ss_pred ecccc
Confidence 99996
No 207
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=96.36 E-value=0.15 Score=61.03 Aligned_cols=121 Identities=14% Similarity=0.210 Sum_probs=78.1
Q ss_pred HHHHHHHHhhcCCCcEEEEcCCHhHHHH-HHHHHHcCCCCCCCCCeEEEEecCCCCHHHHHhhcCCCC---CCceEEEEe
Q 001817 565 EHVLCHIVKKERPGAVLVFMTGWDDINS-LKDQLQAHPLLGDPSRVLLLACHGSMASSEQRLIFDKPE---DGVRKIVLA 640 (1009)
Q Consensus 565 ~~ll~~i~~~~~~g~iLVFl~~~~~i~~-l~~~L~~~~~~~~~~~~~v~~lHs~l~~~er~~v~~~f~---~G~~kVLVA 640 (1009)
..++..++. . ...-+|.+.-|..+-. +...|... ++....+||.+...+|+.+.+.|. .|.+-.|++
T Consensus 735 l~~le~i~~-~-skeK~viVSQwtsvLniv~~hi~~~-------g~~y~si~Gqv~vK~Rq~iv~~FN~~k~~~rVmLlS 805 (901)
T KOG4439|consen 735 LEILETILT-S-SKEKVVIVSQWTSVLNIVRKHIQKG-------GHIYTSITGQVLVKDRQEIVDEFNQEKGGARVMLLS 805 (901)
T ss_pred HHHHHHHhh-c-ccceeeehhHHHHHHHHHHHHHhhC-------CeeeeeecCccchhHHHHHHHHHHhccCCceEEEEE
Confidence 344444422 2 2334555666655433 33445554 667788999999999999998885 345666788
Q ss_pred cCccccccCCCCeeEEEeCCCCccccccCCCCCCcccccccCHHhHHhhhcccCCCCCCcEEEecchhh
Q 001817 641 TNMAETSITINDVVFVIDCGKAKETSYDALNNTPCLLPSWISKAAARQRRGRAGRVQPGECYHLYPRYV 709 (1009)
Q Consensus 641 Tniae~GIdIp~V~~VId~g~~k~~~yd~~~~~~~l~~~~iS~as~~QR~GRAGR~~~G~c~~Lys~~~ 709 (1009)
=...+-|+|+-+.+++|-.|+. |+|. =-.++--|+=|.|...+-..||+.-...
T Consensus 806 LtAGGVGLNL~GaNHlilvDlH----WNPa-----------LEqQAcDRIYR~GQkK~V~IhR~~~~gT 859 (901)
T KOG4439|consen 806 LTAGGVGLNLIGANHLILVDLH----WNPA-----------LEQQACDRIYRMGQKKDVFIHRLMCKGT 859 (901)
T ss_pred EccCcceeeecccceEEEEecc----cCHH-----------HHHHHHHHHHHhcccCceEEEEEEecCc
Confidence 8888999999999999886665 3331 1223445666666666666677765543
No 208
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=96.30 E-value=0.014 Score=71.61 Aligned_cols=50 Identities=24% Similarity=0.363 Sum_probs=30.6
Q ss_pred HHHHHhcCCCCCCccEEEEeCCCcCCCcchHHHHHHHHHcccCCCCcEEEec
Q 001817 402 LLRRLLVDRSLRGVTHVIVDEIHERGMNEDFLLIVLKELLPRRPELRLILMS 453 (1009)
Q Consensus 402 Ll~~L~~~~~l~~is~IIIDEaHeR~~~~d~ll~llk~ll~~~~~lkvIlmS 453 (1009)
+++.+...+.-.+++++||||+|. +..+-...+||.+-.-.++.++|+.+
T Consensus 107 LIe~a~~~P~~gr~KVIIIDEah~--LT~~A~NALLKtLEEPP~~v~FILaT 156 (830)
T PRK07003 107 LLERAVYAPVDARFKVYMIDEVHM--LTNHAFNAMLKTLEEPPPHVKFILAT 156 (830)
T ss_pred HHHHHHhccccCCceEEEEeChhh--CCHHHHHHHHHHHHhcCCCeEEEEEE
Confidence 334333344456789999999996 55555566666654434455555544
No 209
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=96.22 E-value=0.024 Score=70.55 Aligned_cols=114 Identities=20% Similarity=0.276 Sum_probs=94.3
Q ss_pred CCCcEEEEcCCHhHHHHHHHHHHcCCCCCCCCCeEEEEecCCCCHHHHHhhcCCCCCCce--EEEEecCccccccCCCCe
Q 001817 576 RPGAVLVFMTGWDDINSLKDQLQAHPLLGDPSRVLLLACHGSMASSEQRLIFDKPEDGVR--KIVLATNMAETSITINDV 653 (1009)
Q Consensus 576 ~~g~iLVFl~~~~~i~~l~~~L~~~~~~~~~~~~~v~~lHs~l~~~er~~v~~~f~~G~~--kVLVATniae~GIdIp~V 653 (1009)
.+.++|||..-....+-|...|.-+ ++.-+-+.|....++|+..++.|....+ -.|++|-.-..|||+-+.
T Consensus 1275 eghRvLIfTQMtkmLDVLeqFLnyH-------gylY~RLDg~t~vEqRQaLmerFNaD~RIfcfILSTrSggvGiNLtgA 1347 (1958)
T KOG0391|consen 1275 EGHRVLIFTQMTKMLDVLEQFLNYH-------GYLYVRLDGNTSVEQRQALMERFNADRRIFCFILSTRSGGVGINLTGA 1347 (1958)
T ss_pred cCceEEehhHHHHHHHHHHHHHhhc-------ceEEEEecCCccHHHHHHHHHHhcCCCceEEEEEeccCCccccccccC
Confidence 4569999998888888788888776 7778889999999999999999986543 457899999999999999
Q ss_pred eEEEeCCCCccccccCCCCCCcccccccCHHhHHhhhcccCCCCCCcEEEecchhhhh
Q 001817 654 VFVIDCGKAKETSYDALNNTPCLLPSWISKAAARQRRGRAGRVQPGECYHLYPRYVYD 711 (1009)
Q Consensus 654 ~~VId~g~~k~~~yd~~~~~~~l~~~~iS~as~~QR~GRAGR~~~G~c~~Lys~~~~~ 711 (1009)
+.||. ||...|-. =-+++.-|+-|.|+++.=+.|||+++...+
T Consensus 1348 DTVvF--------YDsDwNPt-------MDaQAQDrChRIGqtRDVHIYRLISe~TIE 1390 (1958)
T KOG0391|consen 1348 DTVVF--------YDSDWNPT-------MDAQAQDRCHRIGQTRDVHIYRLISERTIE 1390 (1958)
T ss_pred ceEEE--------ecCCCCch-------hhhHHHHHHHhhcCccceEEEEeeccchHH
Confidence 99997 77765533 235777899999999999999999987665
No 210
>KOG2340 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.19 E-value=0.54 Score=54.94 Aligned_cols=111 Identities=12% Similarity=0.146 Sum_probs=70.6
Q ss_pred CCcEEEEcCCHhHHHHHHHHHHcCCCCCCCCCeEEEEecCCCCHHHHHhhcCCCCCCceEEEEecCcc--ccccCCCCee
Q 001817 577 PGAVLVFMTGWDDINSLKDQLQAHPLLGDPSRVLLLACHGSMASSEQRLIFDKPEDGVRKIVLATNMA--ETSITINDVV 654 (1009)
Q Consensus 577 ~g~iLVFl~~~~~i~~l~~~L~~~~~~~~~~~~~v~~lHs~l~~~er~~v~~~f~~G~~kVLVATnia--e~GIdIp~V~ 654 (1009)
...|||+.|+.-+--++.+.+.+.. +....+|-=-+...-.+.-+.|-.|...|++-|.=+ =+--+|.+|.
T Consensus 552 ~s~~LiyIPSYfDFVRvRNy~K~e~-------i~F~~i~EYssk~~vsRAR~lF~qgr~~vlLyTER~hffrR~~ikGVk 624 (698)
T KOG2340|consen 552 ESGILIYIPSYFDFVRVRNYMKKEE-------ISFVMINEYSSKSKVSRARELFFQGRKSVLLYTERAHFFRRYHIKGVK 624 (698)
T ss_pred cCceEEEecchhhHHHHHHHhhhhh-------cchHHHhhhhhHhhhhHHHHHHHhcCceEEEEehhhhhhhhheeccee
Confidence 4569999999999999988887652 112222211111111222234567888999988644 3556789999
Q ss_pred EEEeCCCCccccccCCCCCCcccccccCHHhHHhhhcccCCCCC-----CcEEEecchhh
Q 001817 655 FVIDCGKAKETSYDALNNTPCLLPSWISKAAARQRRGRAGRVQP-----GECYHLYPRYV 709 (1009)
Q Consensus 655 ~VId~g~~k~~~yd~~~~~~~l~~~~iS~as~~QR~GRAGR~~~-----G~c~~Lys~~~ 709 (1009)
-||-+++|-.+.| .++.+.+.||+.-.+. -.|-.||++.+
T Consensus 625 ~vVfYqpP~~P~F---------------YsEiinm~~k~~~~gn~d~d~~t~~ilytKyD 669 (698)
T KOG2340|consen 625 NVVFYQPPNNPHF---------------YSEIINMSDKTTSQGNTDLDIFTVRILYTKYD 669 (698)
T ss_pred eEEEecCCCCcHH---------------HHHHHhhhhhhhccCCccccceEEEEEeechh
Confidence 9999777764443 2366678887754432 35778888754
No 211
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.18 E-value=0.043 Score=68.13 Aligned_cols=126 Identities=21% Similarity=0.226 Sum_probs=76.5
Q ss_pred cCCeEEEEecCCCchhhhHHHHHHHHHHHHhcCCceEEEech-hHHHHHHHHHHHHHHHhCCcccceeeeeeeeccccCC
Q 001817 312 ENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQ-PRRISAMAVSERVAAERGEKLGESVGYKVRLEGMKGR 390 (1009)
Q Consensus 312 ~~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~Ivvtq-PrR~La~qva~rva~e~~~~~g~~vGy~vr~e~~~~~ 390 (1009)
.++++.++||||+||||.+.......... .+.....+++. +-|+.+.+.-+.+++..+..+
T Consensus 184 ~g~Vi~lVGpnGvGKTTTiaKLA~~~~~~--~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv---------------- 245 (767)
T PRK14723 184 QGGVLALVGPTGVGKTTTTAKLAARCVAR--EGADQLALLTTDSFRIGALEQLRIYGRILGVPV---------------- 245 (767)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHhhHHHH--cCCCeEEEecCcccchHHHHHHHHHHHhCCCCc----------------
Confidence 46789999999999999887666543222 22222233333 556666555555555444221
Q ss_pred CcEEEEEccHHHHHHHhcCCCCCCccEEEEeCCCcCCCcchHHHHHHHHHcc-cCCCCcEEEeccCCCHHHHH
Q 001817 391 DTRLMFCTTGILLRRLLVDRSLRGVTHVIVDEIHERGMNEDFLLIVLKELLP-RRPELRLILMSATLNAELFS 462 (1009)
Q Consensus 391 ~t~Iiv~T~g~Ll~~L~~~~~l~~is~IIIDEaHeR~~~~d~ll~llk~ll~-~~~~lkvIlmSATl~~~~~~ 462 (1009)
.++.++..+.+.+. .+.++++|+||=+- |+....-+...+..+.. ..|.-.++.+|||...+.+.
T Consensus 246 ---~~~~~~~~l~~al~---~~~~~D~VLIDTAG-Rs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~~~~l~ 311 (767)
T PRK14723 246 ---HAVKDAADLRFALA---ALGDKHLVLIDTVG-MSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASHGDTLN 311 (767)
T ss_pred ---cccCCHHHHHHHHH---HhcCCCEEEEeCCC-CCccCHHHHHHHHHHhccCCCCeEEEEECCCCcHHHHH
Confidence 11225666655554 35677999999998 44444445555666543 44566788999998665544
No 212
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.15 E-value=0.042 Score=64.16 Aligned_cols=130 Identities=20% Similarity=0.221 Sum_probs=75.9
Q ss_pred HHcCCeEEEEecCCCchhhhHHHHHHHHHHHHhcCCceEEEechhHHHHHHHHHHHHHHHhCCcccceeeeeeeeccccC
Q 001817 310 ISENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERGEKLGESVGYKVRLEGMKG 389 (1009)
Q Consensus 310 l~~~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~IvvtqPrR~La~qva~rva~e~~~~~g~~vGy~vr~e~~~~ 389 (1009)
+..++++.++||||+||||.+........... .+....++..-..|+.+.+....+++.+|..+.
T Consensus 188 ~~~g~vi~lvGpnG~GKTTtlakLA~~~~~~~-~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~-------------- 252 (420)
T PRK14721 188 IEQGGVYALIGPTGVGKTTTTAKLAARAVIRH-GADKVALLTTDSYRIGGHEQLRIYGKLLGVSVR-------------- 252 (420)
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHHHHHHHhc-CCCeEEEEecCCcchhHHHHHHHHHHHcCCcee--------------
Confidence 35788999999999999998876554433221 122334455545677776666666555543211
Q ss_pred CCcEEEEEccHHHHHHHhcCCCCCCccEEEEeCCCcCCCcchHHHHHHHHHcccC-CCCcEEEeccCCCHHHHHh
Q 001817 390 RDTRLMFCTTGILLRRLLVDRSLRGVTHVIVDEIHERGMNEDFLLIVLKELLPRR-PELRLILMSATLNAELFSS 463 (1009)
Q Consensus 390 ~~t~Iiv~T~g~Ll~~L~~~~~l~~is~IIIDEaHeR~~~~d~ll~llk~ll~~~-~~lkvIlmSATl~~~~~~~ 463 (1009)
.+-++.-+...+. .+.+.++++||.+- |....+.+...++.+.... +.-.++.+|||...+.+.+
T Consensus 253 -----~v~~~~dl~~al~---~l~~~d~VLIDTaG-rsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~~~~~~~ 318 (420)
T PRK14721 253 -----SIKDIADLQLMLH---ELRGKHMVLIDTVG-MSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSSGDTLDE 318 (420)
T ss_pred -----cCCCHHHHHHHHH---HhcCCCEEEecCCC-CCcchHHHHHHHHHHhccCCCceEEEEEcCCCCHHHHHH
Confidence 0111222222222 36678999999985 4444444556666664433 3345678999986655444
No 213
>PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase. This domain is often N-terminal to a GCN5-related N-acetyltransferase domain IPR000182 from INTERPRO and C-terminal to IPR013562 from INTERPRO.; PDB: 2ZPA_B.
Probab=96.14 E-value=0.0012 Score=67.77 Aligned_cols=117 Identities=24% Similarity=0.312 Sum_probs=56.6
Q ss_pred EEEecCCCchhhhHHHHHHHHHHHHhcCCceEEEechhHHHHHHHHHHHHHHHhCCcccceeeeeeeec-------cccC
Q 001817 317 VVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERGEKLGESVGYKVRLE-------GMKG 389 (1009)
Q Consensus 317 II~apTGSGKTt~~~~~ile~~~~~~~~~~~~IvvtqPrR~La~qva~rva~e~~~~~g~~vGy~vr~e-------~~~~ 389 (1009)
||+|+=|.|||+++-+.+..... ....+|+||+|+...+..+.+.+...+. ..||+.... ....
T Consensus 1 VltA~RGRGKSa~lGl~~a~l~~----~~~~~I~vtAP~~~~~~~lf~~~~~~l~-----~~~~~~~~~~~~~~~~~~~~ 71 (177)
T PF05127_consen 1 VLTADRGRGKSAALGLAAAALIQ----KGKIRILVTAPSPENVQTLFEFAEKGLK-----ALGYKEEKKKRIGQIIKLRF 71 (177)
T ss_dssp -EEE-TTSSHHHHHHHCCCCSSS---------EEEE-SS--S-HHHHHCC------------------------------
T ss_pred CccCCCCCCHHHHHHHHHHHHHH----hcCceEEEecCCHHHHHHHHHHHHhhcc-----cccccccccccccccccccc
Confidence 57999999999888776643221 1225899999999999888876644332 223222110 1112
Q ss_pred CCcEEEEEccHHHHHHHhcCCCCCCccEEEEeCCCcCCCcchHHHHHHHHHcccCCCCcEEEeccCCC
Q 001817 390 RDTRLMFCTTGILLRRLLVDRSLRGVTHVIVDEIHERGMNEDFLLIVLKELLPRRPELRLILMSATLN 457 (1009)
Q Consensus 390 ~~t~Iiv~T~g~Ll~~L~~~~~l~~is~IIIDEaHeR~~~~d~ll~llk~ll~~~~~lkvIlmSATl~ 457 (1009)
....|-|..|..+... -...+++|||||=. +... +|+.++...+ .++||.|+.
T Consensus 72 ~~~~i~f~~Pd~l~~~------~~~~DlliVDEAAa--Ip~p----~L~~ll~~~~---~vv~stTi~ 124 (177)
T PF05127_consen 72 NKQRIEFVAPDELLAE------KPQADLLIVDEAAA--IPLP----LLKQLLRRFP---RVVFSTTIH 124 (177)
T ss_dssp -CCC--B--HHHHCCT----------SCEEECTGGG--S-HH----HHHHHHCCSS---EEEEEEEBS
T ss_pred ccceEEEECCHHHHhC------cCCCCEEEEechhc--CCHH----HHHHHHhhCC---EEEEEeecc
Confidence 3567888888876532 22458999999975 4444 3455554443 678888873
No 214
>PRK09183 transposase/IS protein; Provisional
Probab=96.13 E-value=0.11 Score=57.09 Aligned_cols=27 Identities=33% Similarity=0.418 Sum_probs=22.3
Q ss_pred HHcCCeEEEEecCCCchhhhHHHHHHH
Q 001817 310 ISENQVVVVSGETGCGKTTQLPQYILE 336 (1009)
Q Consensus 310 l~~~~~vII~apTGSGKTt~~~~~ile 336 (1009)
+..+.++++.||+|+|||+.+......
T Consensus 99 i~~~~~v~l~Gp~GtGKThLa~al~~~ 125 (259)
T PRK09183 99 IERNENIVLLGPSGVGKTHLAIALGYE 125 (259)
T ss_pred hhcCCeEEEEeCCCCCHHHHHHHHHHH
Confidence 677899999999999999877665443
No 215
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=96.12 E-value=0.0092 Score=57.36 Aligned_cols=23 Identities=30% Similarity=0.484 Sum_probs=19.0
Q ss_pred CCeEEEEecCCCchhhhHHHHHH
Q 001817 313 NQVVVVSGETGCGKTTQLPQYIL 335 (1009)
Q Consensus 313 ~~~vII~apTGSGKTt~~~~~il 335 (1009)
++.+++.||+|||||+.+...+.
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~ 24 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALAR 24 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHh
Confidence 57899999999999977765554
No 216
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.07 E-value=0.011 Score=69.50 Aligned_cols=44 Identities=23% Similarity=0.302 Sum_probs=28.6
Q ss_pred CCCCCCccEEEEeCCCcCCCcchHHHHHHHHHcccCCCCcEEEeccCC
Q 001817 409 DRSLRGVTHVIVDEIHERGMNEDFLLIVLKELLPRRPELRLILMSATL 456 (1009)
Q Consensus 409 ~~~l~~is~IIIDEaHeR~~~~d~ll~llk~ll~~~~~lkvIlmSATl 456 (1009)
.+.-..+.++||||||. +..+..-.+|+.+-. |...++++-||-
T Consensus 116 ~p~~g~~KV~IIDEah~--Ls~~A~NALLKtLEE--Pp~~viFILaTt 159 (484)
T PRK14956 116 APMGGKYKVYIIDEVHM--LTDQSFNALLKTLEE--PPAHIVFILATT 159 (484)
T ss_pred hhhcCCCEEEEEechhh--cCHHHHHHHHHHhhc--CCCceEEEeecC
Confidence 33445788999999996 666777777776643 333455444553
No 217
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=96.02 E-value=0.015 Score=71.25 Aligned_cols=48 Identities=17% Similarity=0.261 Sum_probs=31.5
Q ss_pred HHHHhcCCCCCCccEEEEeCCCcCCCcchHHHHHHHHHcccCCCCcEEEe
Q 001817 403 LRRLLVDRSLRGVTHVIVDEIHERGMNEDFLLIVLKELLPRRPELRLILM 452 (1009)
Q Consensus 403 l~~L~~~~~l~~is~IIIDEaHeR~~~~d~ll~llk~ll~~~~~lkvIlm 452 (1009)
+..+...+.-..+.++||||||. ++.+..-.+||.+-.-.+..++|+.
T Consensus 108 i~~~~~~p~~g~~KV~IIDEah~--Ls~~a~NALLKtLEEPp~~v~FIL~ 155 (647)
T PRK07994 108 LDNVQYAPARGRFKVYLIDEVHM--LSRHSFNALLKTLEEPPEHVKFLLA 155 (647)
T ss_pred HHHHHhhhhcCCCEEEEEechHh--CCHHHHHHHHHHHHcCCCCeEEEEe
Confidence 33444444556889999999996 6666677777766543344555554
No 218
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=96.02 E-value=0.013 Score=72.48 Aligned_cols=65 Identities=26% Similarity=0.419 Sum_probs=49.3
Q ss_pred CHHHHHHHHHHHHcCCeEEEEecCCCchhhhHHHHHHHHHHHHhcCCceEEEechhHHHHHHHHHHHHHH
Q 001817 299 SYKERDALLKAISENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAA 368 (1009)
Q Consensus 299 i~~~q~~il~~l~~~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~IvvtqPrR~La~qva~rva~ 368 (1009)
...|+.++..++.....++|.||+|+|||+.+...+.+.+ . . +.+|+++.|+..++.++.+++..
T Consensus 159 n~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~t~~~ii~~~~-~--~--g~~VLv~a~sn~Avd~l~e~l~~ 223 (637)
T TIGR00376 159 NESQKEAVSFALSSKDLFLIHGPPGTGKTRTLVELIRQLV-K--R--GLRVLVTAPSNIAVDNLLERLAL 223 (637)
T ss_pred CHHHHHHHHHHhcCCCeEEEEcCCCCCHHHHHHHHHHHHH-H--c--CCCEEEEcCcHHHHHHHHHHHHh
Confidence 3455566656555558999999999999988776665543 2 2 23799999999999999999964
No 219
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.94 E-value=0.083 Score=58.25 Aligned_cols=126 Identities=18% Similarity=0.278 Sum_probs=66.1
Q ss_pred cCCeEEEEecCCCchhhhHHHHHHHHHHHHhcCCceEEEechhHHHH-HHHHHHHHHHHhCCcccceeeeeeeeccccCC
Q 001817 312 ENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRIS-AMAVSERVAAERGEKLGESVGYKVRLEGMKGR 390 (1009)
Q Consensus 312 ~~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~IvvtqPrR~L-a~qva~rva~e~~~~~g~~vGy~vr~e~~~~~ 390 (1009)
.++.+.++|++|+||||.+....... . ..+....++.+-+.|+. +.|+.. .+... |+.+.
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~~l-~--~~~~~v~~i~~D~~ri~~~~ql~~-~~~~~--------~~~~~------- 134 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAWQF-H--GKKKTVGFITTDHSRIGTVQQLQD-YVKTI--------GFEVI------- 134 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHH-H--HcCCeEEEEecCCCCHHHHHHHHH-Hhhhc--------CceEE-------
Confidence 55899999999999998776554432 1 22333344444455543 334432 22211 21111
Q ss_pred CcEEEEEccHHHHHHHhcCCCCCCccEEEEeCCCcCCC-cchHHHHHHHHHcccCCCCcEEEeccCCCHHHH
Q 001817 391 DTRLMFCTTGILLRRLLVDRSLRGVTHVIVDEIHERGM-NEDFLLIVLKELLPRRPELRLILMSATLNAELF 461 (1009)
Q Consensus 391 ~t~Iiv~T~g~Ll~~L~~~~~l~~is~IIIDEaHeR~~-~~d~ll~llk~ll~~~~~lkvIlmSATl~~~~~ 461 (1009)
...++..+.+.+..-....++++||||-+= |.. +.+.+..+.+.+-...|+..++.+|||...+..
T Consensus 135 ----~~~~~~~l~~~l~~l~~~~~~D~ViIDt~G-r~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~~~d~ 201 (270)
T PRK06731 135 ----AVRDEAAMTRALTYFKEEARVDYILIDTAG-KNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDM 201 (270)
T ss_pred ----ecCCHHHHHHHHHHHHhcCCCCEEEEECCC-CCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccCHHHH
Confidence 011344443333211123468999999997 333 334444433333233455567789999855433
No 220
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.91 E-value=0.086 Score=62.59 Aligned_cols=127 Identities=22% Similarity=0.252 Sum_probs=71.3
Q ss_pred HcCCeEEEEecCCCchhhhHHHHHHHHHHHHhcCC-ceEEEechhHHHHHHHHHHHHHHHhCCcccceeeeeeeeccccC
Q 001817 311 SENQVVVVSGETGCGKTTQLPQYILESETEAARGA-ACSIICTQPRRISAMAVSERVAAERGEKLGESVGYKVRLEGMKG 389 (1009)
Q Consensus 311 ~~~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~-~~~IvvtqPrR~La~qva~rva~e~~~~~g~~vGy~vr~e~~~~ 389 (1009)
..++++.++||||+||||.+.......... .|. ...++..-+-|+.+.+..+.+++.+|..+..
T Consensus 254 ~~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~--~G~~kV~LI~~Dt~RigA~EQLr~~AeilGVpv~~------------- 318 (484)
T PRK06995 254 DRGGVFALMGPTGVGKTTTTAKLAARCVMR--HGASKVALLTTDSYRIGGHEQLRIYGKILGVPVHA------------- 318 (484)
T ss_pred cCCcEEEEECCCCccHHHHHHHHHHHHHHh--cCCCeEEEEeCCccchhHHHHHHHHHHHhCCCeec-------------
Confidence 357899999999999999988766543322 222 2334444466777777666666665532110
Q ss_pred CCcEEEEEccHHHHHHHhcCCCCCCccEEEEeCCCcCCCcchHHHHHHHHHcccC-CCCcEEEeccCCCHHHHH
Q 001817 390 RDTRLMFCTTGILLRRLLVDRSLRGVTHVIVDEIHERGMNEDFLLIVLKELLPRR-PELRLILMSATLNAELFS 462 (1009)
Q Consensus 390 ~~t~Iiv~T~g~Ll~~L~~~~~l~~is~IIIDEaHeR~~~~d~ll~llk~ll~~~-~~lkvIlmSATl~~~~~~ 462 (1009)
+-+..-+...+. .+.+.++++||.+- |+.....+...+..+.... |.-.++.++||.....+.
T Consensus 319 ------~~~~~Dl~~aL~---~L~d~d~VLIDTaG-r~~~d~~~~e~~~~l~~~~~p~e~~LVLdAt~~~~~l~ 382 (484)
T PRK06995 319 ------VKDAADLRLALS---ELRNKHIVLIDTIG-MSQRDRMVSEQIAMLHGAGAPVKRLLLLNATSHGDTLN 382 (484)
T ss_pred ------cCCchhHHHHHH---hccCCCeEEeCCCC-cChhhHHHHHHHHHHhccCCCCeeEEEEeCCCcHHHHH
Confidence 001111111221 46677899999986 4333322233333332221 333678899998665444
No 221
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.90 E-value=0.043 Score=66.62 Aligned_cols=50 Identities=18% Similarity=0.301 Sum_probs=33.1
Q ss_pred HHHHhcCCCCCCccEEEEeCCCcCCCcchHHHHHHHHHcccCCCCcEEEecc
Q 001817 403 LRRLLVDRSLRGVTHVIVDEIHERGMNEDFLLIVLKELLPRRPELRLILMSA 454 (1009)
Q Consensus 403 l~~L~~~~~l~~is~IIIDEaHeR~~~~d~ll~llk~ll~~~~~lkvIlmSA 454 (1009)
++.+...+...+++++||||+|. ++......+||.+-.-.+++++|+.|-
T Consensus 113 ie~~~~~P~~gr~KViIIDEah~--Ls~~AaNALLKTLEEPP~~v~FILaTt 162 (700)
T PRK12323 113 LDKAVYAPTAGRFKVYMIDEVHM--LTNHAFNAMLKTLEEPPEHVKFILATT 162 (700)
T ss_pred HHHHHhchhcCCceEEEEEChHh--cCHHHHHHHHHhhccCCCCceEEEEeC
Confidence 33333344567889999999997 666666777776655445566666553
No 222
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=95.87 E-value=0.018 Score=59.67 Aligned_cols=118 Identities=19% Similarity=0.303 Sum_probs=53.5
Q ss_pred HHHHcCCeEEEEecCCCchhhhHHHHHHHHHHHHhcCCceEEEechhHHHHHHHHHHHHHHHhCCcccceeeeeeeeccc
Q 001817 308 KAISENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERGEKLGESVGYKVRLEGM 387 (1009)
Q Consensus 308 ~~l~~~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~IvvtqPrR~La~qva~rva~e~~~~~g~~vGy~vr~e~~ 387 (1009)
+.+.+++++++.|+||+|||..+...+.+ +.. .+ ..++++ +...|...+.. ...
T Consensus 42 ~~~~~~~~l~l~G~~G~GKThLa~ai~~~-~~~--~g--~~v~f~-~~~~L~~~l~~----~~~---------------- 95 (178)
T PF01695_consen 42 EFIENGENLILYGPPGTGKTHLAVAIANE-AIR--KG--YSVLFI-TASDLLDELKQ----SRS---------------- 95 (178)
T ss_dssp -S-SC--EEEEEESTTSSHHHHHHHHHHH-HHH--TT----EEEE-EHHHHHHHHHC----CHC----------------
T ss_pred CCcccCeEEEEEhhHhHHHHHHHHHHHHH-hcc--CC--cceeEe-ecCceeccccc----ccc----------------
Confidence 44567889999999999999776655444 333 22 234443 33344433321 000
Q ss_pred cCCCcEEEEEccHHHHHHHhcCCCCCCccEEEEeCCCcCCCcchHHHHHHHHHcccC-CCCcEEEeccCCCHHHHHhhhC
Q 001817 388 KGRDTRLMFCTTGILLRRLLVDRSLRGVTHVIVDEIHERGMNEDFLLIVLKELLPRR-PELRLILMSATLNAELFSSYFG 466 (1009)
Q Consensus 388 ~~~~t~Iiv~T~g~Ll~~L~~~~~l~~is~IIIDEaHeR~~~~d~ll~llk~ll~~~-~~lkvIlmSATl~~~~~~~yf~ 466 (1009)
... .+.+++. +.+++++||||+---.. ++.....+-.++..+ .+..+|+ |.-++.+.+.+.|+
T Consensus 96 -~~~-------~~~~~~~------l~~~dlLilDDlG~~~~-~~~~~~~l~~ii~~R~~~~~tIi-TSN~~~~~l~~~~~ 159 (178)
T PF01695_consen 96 -DGS-------YEELLKR------LKRVDLLILDDLGYEPL-SEWEAELLFEIIDERYERKPTII-TSNLSPSELEEVLG 159 (178)
T ss_dssp -CTT-------HCHHHHH------HHTSSCEEEETCTSS----HHHHHCTHHHHHHHHHT-EEEE-EESS-HHHHHT---
T ss_pred -ccc-------hhhhcCc------cccccEecccccceeee-cccccccchhhhhHhhcccCeEe-eCCCchhhHhhccc
Confidence 000 1123333 34678999999973222 222222222222211 1223454 55567888888887
Q ss_pred C
Q 001817 467 G 467 (1009)
Q Consensus 467 ~ 467 (1009)
+
T Consensus 160 d 160 (178)
T PF01695_consen 160 D 160 (178)
T ss_dssp -
T ss_pred c
Confidence 4
No 223
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=95.77 E-value=0.067 Score=57.20 Aligned_cols=24 Identities=25% Similarity=0.405 Sum_probs=19.4
Q ss_pred cCCeEEEEecCCCchhhhHHHHHH
Q 001817 312 ENQVVVVSGETGCGKTTQLPQYIL 335 (1009)
Q Consensus 312 ~~~~vII~apTGSGKTt~~~~~il 335 (1009)
.+..+++.||+|+|||+.+-.+.-
T Consensus 37 ~~~~lll~G~~G~GKT~la~~~~~ 60 (226)
T TIGR03420 37 GDRFLYLWGESGSGKSHLLQAACA 60 (226)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999977765443
No 224
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.73 E-value=0.022 Score=69.27 Aligned_cols=42 Identities=14% Similarity=0.276 Sum_probs=27.1
Q ss_pred CCCCCccEEEEeCCCcCCCcchHHHHHHHHHcccCCCCcEEEec
Q 001817 410 RSLRGVTHVIVDEIHERGMNEDFLLIVLKELLPRRPELRLILMS 453 (1009)
Q Consensus 410 ~~l~~is~IIIDEaHeR~~~~d~ll~llk~ll~~~~~lkvIlmS 453 (1009)
+...+++++||||||. +..+....+++.+-...+...+|+.+
T Consensus 114 P~~gk~KV~IIDEVh~--LS~~A~NALLKtLEEPP~~v~FILaT 155 (702)
T PRK14960 114 PTQGRFKVYLIDEVHM--LSTHSFNALLKTLEEPPEHVKFLFAT 155 (702)
T ss_pred hhcCCcEEEEEechHh--cCHHHHHHHHHHHhcCCCCcEEEEEE
Confidence 3456789999999996 55555555666554434455566543
No 225
>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification]
Probab=95.73 E-value=0.019 Score=67.96 Aligned_cols=65 Identities=15% Similarity=0.324 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHHcCCeEEEEecCCCchhhhHHHHHHHHHHHHhcCCceEEEechhHHHHHHHHHHHHHH
Q 001817 300 YKERDALLKAISENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAA 368 (1009)
Q Consensus 300 ~~~q~~il~~l~~~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~IvvtqPrR~La~qva~rva~ 368 (1009)
...|....+++.++...+|+||+|+|||....-.+++.+.. ....|+|.+|..+++.|+|+.+.+
T Consensus 412 N~SQ~~AV~~VL~rplsLIQGPPGTGKTvtsa~IVyhl~~~----~~~~VLvcApSNiAVDqLaeKIh~ 476 (935)
T KOG1802|consen 412 NASQSNAVKHVLQRPLSLIQGPPGTGKTVTSATIVYHLARQ----HAGPVLVCAPSNIAVDQLAEKIHK 476 (935)
T ss_pred chHHHHHHHHHHcCCceeeecCCCCCceehhHHHHHHHHHh----cCCceEEEcccchhHHHHHHHHHh
Confidence 45678888899999999999999999997776666654422 345789999999999999999954
No 226
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.73 E-value=0.02 Score=68.99 Aligned_cols=50 Identities=20% Similarity=0.268 Sum_probs=31.6
Q ss_pred HHHHHhcCCCCCCccEEEEeCCCcCCCcchHHHHHHHHHcccCCCCcEEEec
Q 001817 402 LLRRLLVDRSLRGVTHVIVDEIHERGMNEDFLLIVLKELLPRRPELRLILMS 453 (1009)
Q Consensus 402 Ll~~L~~~~~l~~is~IIIDEaHeR~~~~d~ll~llk~ll~~~~~lkvIlmS 453 (1009)
++..+...+...+..++||||+|. ++.+..-.+++.+-...+...+|+.+
T Consensus 107 ii~~~~~~p~~g~~kViIIDEa~~--ls~~a~naLLK~LEepp~~v~fIL~T 156 (546)
T PRK14957 107 ILDNIQYMPSQGRYKVYLIDEVHM--LSKQSFNALLKTLEEPPEYVKFILAT 156 (546)
T ss_pred HHHHHHhhhhcCCcEEEEEechhh--ccHHHHHHHHHHHhcCCCCceEEEEE
Confidence 445555455677889999999996 55555555565554433455566544
No 227
>PRK08727 hypothetical protein; Validated
Probab=95.72 E-value=0.039 Score=59.71 Aligned_cols=20 Identities=30% Similarity=0.376 Sum_probs=15.7
Q ss_pred CeEEEEecCCCchhhhHHHH
Q 001817 314 QVVVVSGETGCGKTTQLPQY 333 (1009)
Q Consensus 314 ~~vII~apTGSGKTt~~~~~ 333 (1009)
+.+++.|++|+|||..+-.+
T Consensus 42 ~~l~l~G~~G~GKThL~~a~ 61 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALAL 61 (233)
T ss_pred CeEEEECCCCCCHHHHHHHH
Confidence 45899999999999655433
No 228
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=95.72 E-value=0.027 Score=69.00 Aligned_cols=43 Identities=21% Similarity=0.308 Sum_probs=28.8
Q ss_pred CCCCCCccEEEEeCCCcCCCcchHHHHHHHHHcccCCCCcEEEec
Q 001817 409 DRSLRGVTHVIVDEIHERGMNEDFLLIVLKELLPRRPELRLILMS 453 (1009)
Q Consensus 409 ~~~l~~is~IIIDEaHeR~~~~d~ll~llk~ll~~~~~lkvIlmS 453 (1009)
.+...++++|||||+|. +..+....+++.+-...+..++|+.+
T Consensus 114 ~P~~gk~KVIIIDEad~--Ls~~A~NALLKtLEEPp~~v~fILaT 156 (709)
T PRK08691 114 APTAGKYKVYIIDEVHM--LSKSAFNAMLKTLEEPPEHVKFILAT 156 (709)
T ss_pred hhhhCCcEEEEEECccc--cCHHHHHHHHHHHHhCCCCcEEEEEe
Confidence 34567889999999996 55555555666655444556666654
No 229
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.72 E-value=0.03 Score=66.70 Aligned_cols=49 Identities=22% Similarity=0.287 Sum_probs=31.5
Q ss_pred HHHHhcCCCCCCccEEEEeCCCcCCCcchHHHHHHHHHcccCCCCcEEEec
Q 001817 403 LRRLLVDRSLRGVTHVIVDEIHERGMNEDFLLIVLKELLPRRPELRLILMS 453 (1009)
Q Consensus 403 l~~L~~~~~l~~is~IIIDEaHeR~~~~d~ll~llk~ll~~~~~lkvIlmS 453 (1009)
+......|...++.++||||+|. +..+-.-.+++.+-.-.+...+|+.+
T Consensus 105 ie~~~~~P~~~~~KVvIIDEah~--Ls~~A~NaLLK~LEePp~~v~fIlat 153 (491)
T PRK14964 105 LENSCYLPISSKFKVYIIDEVHM--LSNSAFNALLKTLEEPAPHVKFILAT 153 (491)
T ss_pred HHHHHhccccCCceEEEEeChHh--CCHHHHHHHHHHHhCCCCCeEEEEEe
Confidence 34444456678899999999996 55555556666655444455555543
No 230
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=95.71 E-value=0.11 Score=58.88 Aligned_cols=129 Identities=22% Similarity=0.314 Sum_probs=68.8
Q ss_pred cCCeEEEEecCCCchhhhHHHHHHHHHHHHhcCCceEEEechhHHHHHHHHHHHHHHHhCCcccceeeeeeeeccccCCC
Q 001817 312 ENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERGEKLGESVGYKVRLEGMKGRD 391 (1009)
Q Consensus 312 ~~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~IvvtqPrR~La~qva~rva~e~~~~~g~~vGy~vr~e~~~~~~ 391 (1009)
.++++.++||+|+||||.+........ ..+....++-.=+.|..|.+.....+...+. ++.... ...+
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~---~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i------~~~~~~---~~~d 180 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYK---AQGKKVLLAAGDTFRAAAIEQLQVWGERVGV------PVIAQK---EGAD 180 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHH---hcCCeEEEEecCccchhhHHHHHHHHHHcCc------eEEEeC---CCCC
Confidence 467899999999999988766554321 2333333333335566665544455444432 211110 0011
Q ss_pred cEEEEEccHHHHHHHhcCCCCCCccEEEEeCCCcCCCcchHHHHHHHHHc-------ccCCCCcEEEeccCCCHHH
Q 001817 392 TRLMFCTTGILLRRLLVDRSLRGVTHVIVDEIHERGMNEDFLLIVLKELL-------PRRPELRLILMSATLNAEL 460 (1009)
Q Consensus 392 t~Iiv~T~g~Ll~~L~~~~~l~~is~IIIDEaHeR~~~~d~ll~llk~ll-------~~~~~lkvIlmSATl~~~~ 460 (1009)
+ .....+.+.. ....++++||||=+- |....+-++..++.+. ...|.-.++.++||...+.
T Consensus 181 p------a~~v~~~l~~-~~~~~~D~ViIDTaG-r~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~~~ 248 (318)
T PRK10416 181 P------ASVAFDAIQA-AKARGIDVLIIDTAG-RLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQNA 248 (318)
T ss_pred H------HHHHHHHHHH-HHhCCCCEEEEeCCC-CCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCChHH
Confidence 1 0111111110 124678999999998 4444444444444433 2345667899999985443
No 231
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=95.69 E-value=0.045 Score=62.79 Aligned_cols=51 Identities=24% Similarity=0.175 Sum_probs=32.9
Q ss_pred HHHHHhcCCCCCCccEEEEeCCCcCCCcchHHHHHHHHHcccCCCCcEEEecc
Q 001817 402 LLRRLLVDRSLRGVTHVIVDEIHERGMNEDFLLIVLKELLPRRPELRLILMSA 454 (1009)
Q Consensus 402 Ll~~L~~~~~l~~is~IIIDEaHeR~~~~d~ll~llk~ll~~~~~lkvIlmSA 454 (1009)
+.+.+...+......+|||||||. ++..-...+++.+-.-.++..+|++|.
T Consensus 129 l~~~l~~~~~~g~~rVviIDeAd~--l~~~aanaLLk~LEEpp~~~~fiLit~ 179 (351)
T PRK09112 129 VGHFLSQTSGDGNWRIVIIDPADD--MNRNAANAILKTLEEPPARALFILISH 179 (351)
T ss_pred HHHHhhhccccCCceEEEEEchhh--cCHHHHHHHHHHHhcCCCCceEEEEEC
Confidence 344444444567889999999997 666666667776654334455566653
No 232
>PF13173 AAA_14: AAA domain
Probab=95.66 E-value=0.044 Score=53.28 Aligned_cols=25 Identities=32% Similarity=0.626 Sum_probs=21.5
Q ss_pred cCCeEEEEecCCCchhhhHHHHHHH
Q 001817 312 ENQVVVVSGETGCGKTTQLPQYILE 336 (1009)
Q Consensus 312 ~~~~vII~apTGSGKTt~~~~~ile 336 (1009)
+++.++|.||.|+||||.+-+++-+
T Consensus 1 n~~~~~l~G~R~vGKTtll~~~~~~ 25 (128)
T PF13173_consen 1 NRKIIILTGPRGVGKTTLLKQLAKD 25 (128)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 4688999999999999988887654
No 233
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.65 E-value=0.025 Score=65.37 Aligned_cols=50 Identities=20% Similarity=0.332 Sum_probs=30.1
Q ss_pred HHHHHhcCCCCCCccEEEEeCCCcCCCcchHHHHHHHHHcccCCCCcEEEec
Q 001817 402 LLRRLLVDRSLRGVTHVIVDEIHERGMNEDFLLIVLKELLPRRPELRLILMS 453 (1009)
Q Consensus 402 Ll~~L~~~~~l~~is~IIIDEaHeR~~~~d~ll~llk~ll~~~~~lkvIlmS 453 (1009)
++..+...|...+..++||||+|. +..+..-.+++.+-...+..++|+.+
T Consensus 107 i~~~~~~~p~~~~~kviIIDEa~~--l~~~a~naLLk~lEe~~~~~~fIl~t 156 (363)
T PRK14961 107 ILDNIYYSPSKSRFKVYLIDEVHM--LSRHSFNALLKTLEEPPQHIKFILAT 156 (363)
T ss_pred HHHHHhcCcccCCceEEEEEChhh--cCHHHHHHHHHHHhcCCCCeEEEEEc
Confidence 334444445566789999999996 44444445565554444455566643
No 234
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=95.64 E-value=0.044 Score=60.37 Aligned_cols=31 Identities=26% Similarity=0.308 Sum_probs=25.6
Q ss_pred HHHHHHHHHcCCeEEEEecCCCchhhhHHHH
Q 001817 303 RDALLKAISENQVVVVSGETGCGKTTQLPQY 333 (1009)
Q Consensus 303 q~~il~~l~~~~~vII~apTGSGKTt~~~~~ 333 (1009)
.+.++..+..+..+++.||+|+|||+.+-..
T Consensus 11 ~~~~l~~l~~g~~vLL~G~~GtGKT~lA~~l 41 (262)
T TIGR02640 11 TSRALRYLKSGYPVHLRGPAGTGKTTLAMHV 41 (262)
T ss_pred HHHHHHHHhcCCeEEEEcCCCCCHHHHHHHH
Confidence 4566777888999999999999999777544
No 235
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=95.62 E-value=0.045 Score=60.95 Aligned_cols=89 Identities=25% Similarity=0.277 Sum_probs=52.3
Q ss_pred cCCeEEEEecCCCchhhhHHHHHHHHHHHHhcCCceEEEechhHHHHHHHHHHHHHHHhCCcccceeeeeeeeccccCCC
Q 001817 312 ENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERGEKLGESVGYKVRLEGMKGRD 391 (1009)
Q Consensus 312 ~~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~IvvtqPrR~La~qva~rva~e~~~~~g~~vGy~vr~e~~~~~~ 391 (1009)
.+++++++||||+||||.+...+....... .+....++-+-|-|..+.+.....+...+..+.
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~-g~~~V~li~~D~~r~~a~eql~~~~~~~~~p~~---------------- 255 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEH-GNKKVALITTDTYRIGAVEQLKTYAKILGVPVK---------------- 255 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHc-CCCeEEEEECCccchhHHHHHHHHHHHhCCcee----------------
Confidence 567899999999999998876665433211 123445555556676665555555444332210
Q ss_pred cEEEEEccHHHHHHHhcCCCCCCccEEEEeCC
Q 001817 392 TRLMFCTTGILLRRLLVDRSLRGVTHVIVDEI 423 (1009)
Q Consensus 392 t~Iiv~T~g~Ll~~L~~~~~l~~is~IIIDEa 423 (1009)
...++.-+...+. .+.++++||||.+
T Consensus 256 ---~~~~~~~l~~~l~---~~~~~d~vliDt~ 281 (282)
T TIGR03499 256 ---VARDPKELRKALD---RLRDKDLILIDTA 281 (282)
T ss_pred ---ccCCHHHHHHHHH---HccCCCEEEEeCC
Confidence 0113444444443 3456899999975
No 236
>PRK06835 DNA replication protein DnaC; Validated
Probab=95.62 E-value=0.062 Score=61.07 Aligned_cols=116 Identities=20% Similarity=0.243 Sum_probs=59.2
Q ss_pred cCCeEEEEecCCCchhhhHHHHHHHHHHHHhcCCceEEEechhHHHHHHHHHHHHHHHhCCcccceeeeeeeeccccCCC
Q 001817 312 ENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERGEKLGESVGYKVRLEGMKGRD 391 (1009)
Q Consensus 312 ~~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~IvvtqPrR~La~qva~rva~e~~~~~g~~vGy~vr~e~~~~~~ 391 (1009)
.+.++++.|+||+|||..+. .+...+.. + +..|+++ +...+...+.... ++... .
T Consensus 182 ~~~~Lll~G~~GtGKThLa~-aIa~~l~~--~--g~~V~y~-t~~~l~~~l~~~~-----------------~~~~~--~ 236 (329)
T PRK06835 182 NNENLLFYGNTGTGKTFLSN-CIAKELLD--R--GKSVIYR-TADELIEILREIR-----------------FNNDK--E 236 (329)
T ss_pred cCCcEEEECCCCCcHHHHHH-HHHHHHHH--C--CCeEEEE-EHHHHHHHHHHHH-----------------hccch--h
Confidence 46899999999999997554 44444443 2 2345553 3333433332210 00000 0
Q ss_pred cEEEEEccHHHHHHHhcCCCCCCccEEEEeCCCcCCCcchHHHHHHHHHcccCC-CCcEEEeccCCCHHHHHhhhC
Q 001817 392 TRLMFCTTGILLRRLLVDRSLRGVTHVIVDEIHERGMNEDFLLIVLKELLPRRP-ELRLILMSATLNAELFSSYFG 466 (1009)
Q Consensus 392 t~Iiv~T~g~Ll~~L~~~~~l~~is~IIIDEaHeR~~~~d~ll~llk~ll~~~~-~lkvIlmSATl~~~~~~~yf~ 466 (1009)
.... ++ .+.++++||||+++.- ..+++....+-.++..+- .-+-+++|..++++.+.+.++
T Consensus 237 ------~~~~-~~------~l~~~DLLIIDDlG~e-~~t~~~~~~Lf~iin~R~~~~k~tIiTSNl~~~el~~~~~ 298 (329)
T PRK06835 237 ------LEEV-YD------LLINCDLLIIDDLGTE-KITEFSKSELFNLINKRLLRQKKMIISTNLSLEELLKTYS 298 (329)
T ss_pred ------HHHH-HH------HhccCCEEEEeccCCC-CCCHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHh
Confidence 0000 12 3457899999999832 334443343444443221 123355666666666655543
No 237
>PRK07952 DNA replication protein DnaC; Validated
Probab=95.61 E-value=0.26 Score=53.56 Aligned_cols=115 Identities=19% Similarity=0.270 Sum_probs=62.4
Q ss_pred CeEEEEecCCCchhhhHHHHHHHHHHHHhcCCceEEEechhHHHHHHHHHHHHHHHhCCcccceeeeeeeeccccCCCcE
Q 001817 314 QVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERGEKLGESVGYKVRLEGMKGRDTR 393 (1009)
Q Consensus 314 ~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~IvvtqPrR~La~qva~rva~e~~~~~g~~vGy~vr~e~~~~~~t~ 393 (1009)
..+++.|++|+|||+.+...+. .+.. .+ ..++++ +... +...+...+. . .+
T Consensus 100 ~~~~l~G~~GtGKThLa~aia~-~l~~--~g--~~v~~i-t~~~----l~~~l~~~~~----------------~-~~-- 150 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAAICN-ELLL--RG--KSVLII-TVAD----IMSAMKDTFS----------------N-SE-- 150 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHH-HHHh--cC--CeEEEE-EHHH----HHHHHHHHHh----------------h-cc--
Confidence 5789999999999976654443 3332 22 344443 2222 2223322110 0 00
Q ss_pred EEEEccHHHHHHHhcCCCCCCccEEEEeCCCcCCCcchHHHHHHHHHcccC-CCCcEEEeccCCCHHHHHhhhCC
Q 001817 394 LMFCTTGILLRRLLVDRSLRGVTHVIVDEIHERGMNEDFLLIVLKELLPRR-PELRLILMSATLNAELFSSYFGG 467 (1009)
Q Consensus 394 Iiv~T~g~Ll~~L~~~~~l~~is~IIIDEaHeR~~~~d~ll~llk~ll~~~-~~lkvIlmSATl~~~~~~~yf~~ 467 (1009)
.+...+++. +.++++|||||++.-. .+++-..++-.++..+ .+.+-+++|.-++.+.+.+.+++
T Consensus 151 ---~~~~~~l~~------l~~~dlLvIDDig~~~-~s~~~~~~l~~Ii~~Ry~~~~~tiitSNl~~~~l~~~~g~ 215 (244)
T PRK07952 151 ---TSEEQLLND------LSNVDLLVIDEIGVQT-ESRYEKVIINQIVDRRSSSKRPTGMLTNSNMEEMTKLLGE 215 (244)
T ss_pred ---ccHHHHHHH------hccCCEEEEeCCCCCC-CCHHHHHHHHHHHHHHHhCCCCEEEeCCCCHHHHHHHhCh
Confidence 122233432 4578999999999532 4555555555554433 22344556666677777777754
No 238
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.61 E-value=0.028 Score=70.33 Aligned_cols=42 Identities=19% Similarity=0.283 Sum_probs=29.2
Q ss_pred CCCCCCccEEEEeCCCcCCCcchHHHHHHHHHcccCCCCcEEEe
Q 001817 409 DRSLRGVTHVIVDEIHERGMNEDFLLIVLKELLPRRPELRLILM 452 (1009)
Q Consensus 409 ~~~l~~is~IIIDEaHeR~~~~d~ll~llk~ll~~~~~lkvIlm 452 (1009)
.+.-.++.++||||||. +..+..-.+||.+-.-.+.+++|+.
T Consensus 114 ~P~~gk~KViIIDEAh~--LT~eAqNALLKtLEEPP~~vrFILa 155 (944)
T PRK14949 114 RPSRGRFKVYLIDEVHM--LSRSSFNALLKTLEEPPEHVKFLLA 155 (944)
T ss_pred hhhcCCcEEEEEechHh--cCHHHHHHHHHHHhccCCCeEEEEE
Confidence 33446789999999997 6677777777766554445566664
No 239
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=95.53 E-value=0.058 Score=60.42 Aligned_cols=60 Identities=27% Similarity=0.296 Sum_probs=47.2
Q ss_pred cCCCCHHHHHHHHHHHHcCC--eEEEEecCCCchhhhHHHHHHHHHHHHhcCCceEEEechhHH
Q 001817 295 RSLPSYKERDALLKAISENQ--VVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRR 356 (1009)
Q Consensus 295 ~~LPi~~~q~~il~~l~~~~--~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~IvvtqPrR 356 (1009)
.-.|-..+|.-.++++.... -|.+.|+-|||||..++-.-++..+.. +...+|+|+-|+.
T Consensus 225 Gi~prn~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALaAgleqv~e~--~~y~KiiVtRp~v 286 (436)
T COG1875 225 GIRPRNAEQRVALDLLLDDDIDLVSLGGKAGTGKTLLALAAGLEQVLER--KRYRKIIVTRPTV 286 (436)
T ss_pred ccCcccHHHHHHHHHhcCCCCCeEEeeccCCccHhHHHHHHHHHHHHHH--hhhceEEEecCCc
Confidence 34577888999999997754 577899999999988888888877663 4566899977763
No 240
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=95.49 E-value=0.086 Score=62.07 Aligned_cols=124 Identities=23% Similarity=0.363 Sum_probs=67.3
Q ss_pred CCeEEEEecCCCchhhhHHHHHHHHHHHHhcCCceEEEechhHHHHHHHHHHHHHHHhCCcccceeeeeeeeccccCCCc
Q 001817 313 NQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERGEKLGESVGYKVRLEGMKGRDT 392 (1009)
Q Consensus 313 ~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~IvvtqPrR~La~qva~rva~e~~~~~g~~vGy~vr~e~~~~~~t 392 (1009)
..+++++|++|+||||.+...... +.. .+....++.+-+.|..|.+....++...+..+ .+ .. ...+
T Consensus 95 p~vI~lvG~~GsGKTTtaakLA~~-L~~--~g~kV~lV~~D~~R~aa~eQL~~la~~~gvp~---~~-----~~-~~~d- 161 (437)
T PRK00771 95 PQTIMLVGLQGSGKTTTAAKLARY-FKK--KGLKVGLVAADTYRPAAYDQLKQLAEKIGVPF---YG-----DP-DNKD- 161 (437)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHH-HHH--cCCeEEEecCCCCCHHHHHHHHHHHHHcCCcE---Ee-----cC-CccC-
Confidence 468889999999999888766543 222 34445555555666666555555555444321 00 00 0000
Q ss_pred EEEEEccHHHHHHHhcCCCCCCccEEEEeCCCcCCCcchHHHHHHHHHcc-cCCCCcEEEeccCCCH
Q 001817 393 RLMFCTTGILLRRLLVDRSLRGVTHVIVDEIHERGMNEDFLLIVLKELLP-RRPELRLILMSATLNA 458 (1009)
Q Consensus 393 ~Iiv~T~g~Ll~~L~~~~~l~~is~IIIDEaHeR~~~~d~ll~llk~ll~-~~~~lkvIlmSATl~~ 458 (1009)
....+.+.+. .+...++||||.+-....+.+ ++.-++.+.. ..|+.-++.++||...
T Consensus 162 -----~~~i~~~al~---~~~~~DvVIIDTAGr~~~d~~-lm~El~~l~~~~~pdevlLVvda~~gq 219 (437)
T PRK00771 162 -----AVEIAKEGLE---KFKKADVIIVDTAGRHALEED-LIEEMKEIKEAVKPDEVLLVIDATIGQ 219 (437)
T ss_pred -----HHHHHHHHHH---HhhcCCEEEEECCCcccchHH-HHHHHHHHHHHhcccceeEEEeccccH
Confidence 0112222222 123348999999963223333 3333444332 3467778888998743
No 241
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=95.49 E-value=0.076 Score=68.61 Aligned_cols=125 Identities=18% Similarity=0.210 Sum_probs=76.0
Q ss_pred CCCCHHHHHHHHHHH-HcCCeEEEEecCCCchhhhHHHHHHHHHHHHhcCCceEEEechhHHHHHHHHHHHHHHHhCCcc
Q 001817 296 SLPSYKERDALLKAI-SENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERGEKL 374 (1009)
Q Consensus 296 ~LPi~~~q~~il~~l-~~~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~IvvtqPrR~La~qva~rva~e~~~~~ 374 (1009)
.......|.+.+..+ ..++.++|+|+.|+||||.+-. +.+.+.. .+..|+.++||--+|..+.+ ..|...
T Consensus 379 ~~~Ls~eQ~~Av~~i~~~~r~~~v~G~AGTGKTt~l~~-~~~~~e~----~G~~V~g~ApTgkAA~~L~e----~~Gi~a 449 (1102)
T PRK13826 379 HARLSDEQKTAIEHVAGPARIAAVVGRAGAGKTTMMKA-AREAWEA----AGYRVVGGALAGKAAEGLEK----EAGIQS 449 (1102)
T ss_pred CCCCCHHHHHHHHHHhccCCeEEEEeCCCCCHHHHHHH-HHHHHHH----cCCeEEEEcCcHHHHHHHHH----hhCCCe
Confidence 345556666666655 4588999999999999976654 3333322 24567788899777765533 222210
Q ss_pred cceeeeeeeeccccCCCcEEEEEccHHH-HHHHhcCCCCCCccEEEEeCCCcCCCcchHHHHHHHHHcccCCCCcEEEec
Q 001817 375 GESVGYKVRLEGMKGRDTRLMFCTTGIL-LRRLLVDRSLRGVTHVIVDEIHERGMNEDFLLIVLKELLPRRPELRLILMS 453 (1009)
Q Consensus 375 g~~vGy~vr~e~~~~~~t~Iiv~T~g~L-l~~L~~~~~l~~is~IIIDEaHeR~~~~d~ll~llk~ll~~~~~lkvIlmS 453 (1009)
.|-..+ ++.-.....+..-++|||||+.. +.+..+..+++.+.. .+.|+|++.
T Consensus 450 ----------------------~TIas~ll~~~~~~~~l~~~~vlVIDEAsM--v~~~~m~~Ll~~~~~--~garvVLVG 503 (1102)
T PRK13826 450 ----------------------RTLSSWELRWNQGRDQLDNKTVFVLDEAGM--VASRQMALFVEAVTR--AGAKLVLVG 503 (1102)
T ss_pred ----------------------eeHHHHHhhhccCccCCCCCcEEEEECccc--CCHHHHHHHHHHHHh--cCCEEEEEC
Confidence 111122 11111122466678999999996 777777776666532 457788876
Q ss_pred cC
Q 001817 454 AT 455 (1009)
Q Consensus 454 AT 455 (1009)
=+
T Consensus 504 D~ 505 (1102)
T PRK13826 504 DP 505 (1102)
T ss_pred CH
Confidence 44
No 242
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.47 E-value=0.03 Score=67.45 Aligned_cols=43 Identities=19% Similarity=0.290 Sum_probs=28.8
Q ss_pred CCCCCCccEEEEeCCCcCCCcchHHHHHHHHHcccCCCCcEEEec
Q 001817 409 DRSLRGVTHVIVDEIHERGMNEDFLLIVLKELLPRRPELRLILMS 453 (1009)
Q Consensus 409 ~~~l~~is~IIIDEaHeR~~~~d~ll~llk~ll~~~~~lkvIlmS 453 (1009)
.+.-.+++++||||||. +..+..-.+++.+-.-.+..++|+.+
T Consensus 114 ~p~~~~~kV~iIDE~~~--ls~~a~naLLk~LEepp~~~~fIlat 156 (509)
T PRK14958 114 APTKGRFKVYLIDEVHM--LSGHSFNALLKTLEEPPSHVKFILAT 156 (509)
T ss_pred ccccCCcEEEEEEChHh--cCHHHHHHHHHHHhccCCCeEEEEEE
Confidence 44556889999999996 55666666666554444455666543
No 243
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=95.43 E-value=0.065 Score=65.52 Aligned_cols=52 Identities=15% Similarity=0.127 Sum_probs=38.5
Q ss_pred ceEEEEecCccccccCCCCeeEEEeCCCCccccccCCCCCCcccccccCHHhHHhhhcccCCC---CCCcEEE
Q 001817 634 VRKIVLATNMAETSITINDVVFVIDCGKAKETSYDALNNTPCLLPSWISKAAARQRRGRAGRV---QPGECYH 703 (1009)
Q Consensus 634 ~~kVLVATniae~GIdIp~V~~VId~g~~k~~~yd~~~~~~~l~~~~iS~as~~QR~GRAGR~---~~G~c~~ 703 (1009)
.++.|+|--.+-.|-|-|+|=.++-..-. -|..+=+|-+||.-|. ..|.-++
T Consensus 483 plRFIFS~waLrEGWDNPNVFtIckL~~S------------------~SeiSK~QeVGRGLRLaVNe~G~RV~ 537 (985)
T COG3587 483 PLRFIFSKWALREGWDNPNVFTICKLRSS------------------GSEISKLQEVGRGLRLAVNENGERVT 537 (985)
T ss_pred cceeeeehhHHhhcCCCCCeeEEEEecCC------------------CcchHHHHHhccceeeeeccccceec
Confidence 38999999999999999998666532111 1555677999999997 4565544
No 244
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=95.36 E-value=0.24 Score=54.35 Aligned_cols=118 Identities=21% Similarity=0.293 Sum_probs=65.9
Q ss_pred HHHHHHcCCeEEEEecCCCchhhhHHHHHHHHHHHHhcCCceEEEechhHHHHHHHHHHHHHHHhCCcccceeeeeeeec
Q 001817 306 LLKAISENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERGEKLGESVGYKVRLE 385 (1009)
Q Consensus 306 il~~l~~~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~IvvtqPrR~La~qva~rva~e~~~~~g~~vGy~vr~e 385 (1009)
+.+.+.++.++++.|++|+|||..+.-...+.+ . . +..++++ ++.+++.++...... |
T Consensus 98 ~~~~~~~~~nl~l~G~~G~GKThLa~Ai~~~l~-~--~--g~sv~f~-~~~el~~~Lk~~~~~----------~------ 155 (254)
T COG1484 98 LVEFFERGENLVLLGPPGVGKTHLAIAIGNELL-K--A--GISVLFI-TAPDLLSKLKAAFDE----------G------ 155 (254)
T ss_pred HHHHhccCCcEEEECCCCCcHHHHHHHHHHHHH-H--c--CCeEEEE-EHHHHHHHHHHHHhc----------C------
Confidence 334455788999999999999976655444433 2 2 2334443 556666665544411 0
Q ss_pred cccCCCcEEEEEccHHHHHHHhcCCCCCCccEEEEeCCCcCCCc---chHHHHHHHHHcccCCCCcEEEeccCCCHHHHH
Q 001817 386 GMKGRDTRLMFCTTGILLRRLLVDRSLRGVTHVIVDEIHERGMN---EDFLLIVLKELLPRRPELRLILMSATLNAELFS 462 (1009)
Q Consensus 386 ~~~~~~t~Iiv~T~g~Ll~~L~~~~~l~~is~IIIDEaHeR~~~---~d~ll~llk~ll~~~~~lkvIlmSATl~~~~~~ 462 (1009)
...+.|.+ .+.+++++||||+--.... .+.+..++......+. . ++|.-.+.+.+.
T Consensus 156 -----------~~~~~l~~------~l~~~dlLIiDDlG~~~~~~~~~~~~~q~I~~r~~~~~---~-~~tsN~~~~~~~ 214 (254)
T COG1484 156 -----------RLEEKLLR------ELKKVDLLIIDDIGYEPFSQEEADLLFQLISRRYESRS---L-IITSNLSFGEWD 214 (254)
T ss_pred -----------chHHHHHH------HhhcCCEEEEecccCccCCHHHHHHHHHHHHHHHhhcc---c-eeecCCChHHHH
Confidence 01123443 2568899999999842222 2344444444333322 3 555555666666
Q ss_pred hhhC
Q 001817 463 SYFG 466 (1009)
Q Consensus 463 ~yf~ 466 (1009)
+-|+
T Consensus 215 ~~~~ 218 (254)
T COG1484 215 ELFG 218 (254)
T ss_pred hhcc
Confidence 5554
No 245
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=95.36 E-value=0.074 Score=57.13 Aligned_cols=24 Identities=21% Similarity=0.462 Sum_probs=18.8
Q ss_pred cCCeEEEEecCCCchhhhHHHHHH
Q 001817 312 ENQVVVVSGETGCGKTTQLPQYIL 335 (1009)
Q Consensus 312 ~~~~vII~apTGSGKTt~~~~~il 335 (1009)
.++.++++||+|+|||+.+-.+..
T Consensus 41 ~~~~~~l~G~~G~GKT~La~ai~~ 64 (227)
T PRK08903 41 ADRFFYLWGEAGSGRSHLLQALVA 64 (227)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999976654443
No 246
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=95.33 E-value=0.05 Score=67.93 Aligned_cols=148 Identities=18% Similarity=0.150 Sum_probs=86.3
Q ss_pred HHHHHHHHHH----HcCCeEEEEecCCCchhhhHHHHHHHHHHHHhcCCceEEEechhHHHHHHHHHHHHHHHh-CCccc
Q 001817 301 KERDALLKAI----SENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAER-GEKLG 375 (1009)
Q Consensus 301 ~~q~~il~~l----~~~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~IvvtqPrR~La~qva~rva~e~-~~~~g 375 (1009)
.||..-++++ ++|=|.|+.-+-|-|||.|..-++.+.+.+.+....-.||| ||-.+-+ +--.+...+ |.++-
T Consensus 618 eYQkiGLdWLatLYeknlNGILADEmGLGKTIQtISllAhLACeegnWGPHLIVV--pTsviLn-WEMElKRwcPglKIL 694 (1958)
T KOG0391|consen 618 EYQKIGLDWLATLYEKNLNGILADEMGLGKTIQTISLLAHLACEEGNWGPHLIVV--PTSVILN-WEMELKRWCPGLKIL 694 (1958)
T ss_pred HHHHhhHHHHHHHHHhcccceehhhhcccchhHHHHHHHHHHhcccCCCCceEEe--echhhhh-hhHHHhhhCCcceEe
Confidence 4455555554 56778999999999999888766665554444444445555 8866532 222333332 33333
Q ss_pred ceeee-ee----eeccccCCCcEEEEEccHHHHHHHhcCCCCCCccEEEEeCCCcCCCcchHHHHHHHHHcccCCCCcEE
Q 001817 376 ESVGY-KV----RLEGMKGRDTRLMFCTTGILLRRLLVDRSLRGVTHVIVDEIHERGMNEDFLLIVLKELLPRRPELRLI 450 (1009)
Q Consensus 376 ~~vGy-~v----r~e~~~~~~t~Iiv~T~g~Ll~~L~~~~~l~~is~IIIDEaHeR~~~~d~ll~llk~ll~~~~~lkvI 450 (1009)
...|- +. |..+......+|.|+....+++-+..- .-.++.++|+||+|. --.|--..|..++..+.. |-+
T Consensus 695 TYyGs~kErkeKRqgW~kPnaFHVCItSYklv~qd~~AF-krkrWqyLvLDEaqn---IKnfksqrWQAllnfnsq-rRL 769 (1958)
T KOG0391|consen 695 TYYGSHKERKEKRQGWAKPNAFHVCITSYKLVFQDLTAF-KRKRWQYLVLDEAQN---IKNFKSQRWQALLNFNSQ-RRL 769 (1958)
T ss_pred eecCCHHHHHHHhhcccCCCeeEEeehhhHHHHhHHHHH-Hhhccceeehhhhhh---hcchhHHHHHHHhccchh-hee
Confidence 33441 11 223333345688888887776655321 345778999999994 122334456666665543 346
Q ss_pred EeccCC
Q 001817 451 LMSATL 456 (1009)
Q Consensus 451 lmSATl 456 (1009)
+++.|.
T Consensus 770 LLtgTP 775 (1958)
T KOG0391|consen 770 LLTGTP 775 (1958)
T ss_pred eecCCc
Confidence 667774
No 247
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.33 E-value=0.065 Score=65.34 Aligned_cols=48 Identities=21% Similarity=0.173 Sum_probs=31.4
Q ss_pred HHHhcCCCCCCccEEEEeCCCcCCCcchHHHHHHHHHcccCCCCcEEEec
Q 001817 404 RRLLVDRSLRGVTHVIVDEIHERGMNEDFLLIVLKELLPRRPELRLILMS 453 (1009)
Q Consensus 404 ~~L~~~~~l~~is~IIIDEaHeR~~~~d~ll~llk~ll~~~~~lkvIlmS 453 (1009)
..+...+...++.++||||+|. +..+-.-.+++.+-.-.+...+|+.+
T Consensus 108 ~~~~~~P~~~~~KVvIIDEah~--Lt~~A~NALLK~LEEpp~~~~fIL~t 155 (584)
T PRK14952 108 DRAFYAPAQSRYRIFIVDEAHM--VTTAGFNALLKIVEEPPEHLIFIFAT 155 (584)
T ss_pred HHHHhhhhcCCceEEEEECCCc--CCHHHHHHHHHHHhcCCCCeEEEEEe
Confidence 3344445678899999999996 55666666666665444455555544
No 248
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=95.24 E-value=0.1 Score=57.79 Aligned_cols=128 Identities=22% Similarity=0.313 Sum_probs=68.8
Q ss_pred cCCeEEEEecCCCchhhhHHHHHHHHHHHHhcCCceEEEechhHHHHHHHHHHHHHHHhCCcccceeeeeeeeccccCCC
Q 001817 312 ENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERGEKLGESVGYKVRLEGMKGRD 391 (1009)
Q Consensus 312 ~~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~IvvtqPrR~La~qva~rva~e~~~~~g~~vGy~vr~e~~~~~~ 391 (1009)
..++++++|++|+||||.+....... . ..+....++-+=+.|..+.+....+++.++..+ + ... . ..+
T Consensus 71 ~~~vi~l~G~~G~GKTTt~akLA~~l-~--~~g~~V~li~~D~~r~~a~~ql~~~~~~~~i~~---~--~~~--~--~~d 138 (272)
T TIGR00064 71 KPNVILFVGVNGVGKTTTIAKLANKL-K--KQGKSVLLAAGDTFRAAAIEQLEEWAKRLGVDV---I--KQK--E--GAD 138 (272)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH-H--hcCCEEEEEeCCCCCHHHHHHHHHHHHhCCeEE---E--eCC--C--CCC
Confidence 35688889999999998877665432 1 233333344444567766655555555554211 0 000 0 011
Q ss_pred cEEEEEcc-HHHHHHHhcCCCCCCccEEEEeCCCcCCCcchHHHHHHHHHcc-------cCCCCcEEEeccCCCHHH
Q 001817 392 TRLMFCTT-GILLRRLLVDRSLRGVTHVIVDEIHERGMNEDFLLIVLKELLP-------RRPELRLILMSATLNAEL 460 (1009)
Q Consensus 392 t~Iiv~T~-g~Ll~~L~~~~~l~~is~IIIDEaHeR~~~~d~ll~llk~ll~-------~~~~lkvIlmSATl~~~~ 460 (1009)
| ....+.+.. ....++++||||=+- |......++.-++.+.. ..++-.++.++||...+.
T Consensus 139 -------p~~~~~~~l~~-~~~~~~D~ViIDT~G-~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~~~ 206 (272)
T TIGR00064 139 -------PAAVAFDAIQK-AKARNIDVVLIDTAG-RLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQNA 206 (272)
T ss_pred -------HHHHHHHHHHH-HHHCCCCEEEEeCCC-CCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCHHH
Confidence 1 112222211 123678999999998 33333333333443332 235667899999985543
No 249
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=95.24 E-value=0.16 Score=60.49 Aligned_cols=36 Identities=22% Similarity=0.315 Sum_probs=23.4
Q ss_pred CeEEEEecCCCchhhhHHHHHHHHHHHHhcCCceEEEec
Q 001817 314 QVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICT 352 (1009)
Q Consensus 314 ~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~Ivvt 352 (1009)
+.+++.||+|+|||..+ +.+...+.. ......++++
T Consensus 149 ~~l~l~G~~G~GKThL~-~ai~~~~~~--~~~~~~v~yi 184 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLL-HAIGNYILE--KNPNAKVVYV 184 (450)
T ss_pred CeEEEECCCCCCHHHHH-HHHHHHHHH--hCCCCeEEEE
Confidence 56899999999999655 444444433 2234566665
No 250
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=95.17 E-value=0.24 Score=61.24 Aligned_cols=131 Identities=20% Similarity=0.253 Sum_probs=78.9
Q ss_pred HHHHHHHHcCC-eEEEEecCCCchhhhHHHHHHHHHHHHhcCCceEEEechhHHHHHHHHHHHHHHHh---CCcccceee
Q 001817 304 DALLKAISENQ-VVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAER---GEKLGESVG 379 (1009)
Q Consensus 304 ~~il~~l~~~~-~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~IvvtqPrR~La~qva~rva~e~---~~~~g~~vG 379 (1009)
+.+...+..++ .++|.|.=|=|||.++-+.+.... . .. ....|+||.|+.+.+.++.+...+-+ |.+.+. -
T Consensus 221 ~~~~~l~~~~~~~~vlTAdRGRGKSA~lGi~~~~~~-~-~~-~~~~iiVTAP~~~nv~~Lf~fa~~~l~~lg~~~~v--~ 295 (758)
T COG1444 221 EILERLLDAPKRALVLTADRGRGKSAALGIALAAAA-R-LA-GSVRIIVTAPTPANVQTLFEFAGKGLEFLGYKRKV--A 295 (758)
T ss_pred HHHHHHHcCCCceEEEEcCCCCcHhHHHhHHHHHHH-H-hc-CCceEEEeCCCHHHHHHHHHHHHHhHHHhCCcccc--c
Confidence 33334444444 899999999999998887773322 1 11 25689999999999999888775543 222110 0
Q ss_pred eeeeec--cccCCCcEEEEEccHHHHHHHhcCCCCCCccEEEEeCCCcCCCcchHHHHHHHHHcccCCCCcEEEeccCCC
Q 001817 380 YKVRLE--GMKGRDTRLMFCTTGILLRRLLVDRSLRGVTHVIVDEIHERGMNEDFLLIVLKELLPRRPELRLILMSATLN 457 (1009)
Q Consensus 380 y~vr~e--~~~~~~t~Iiv~T~g~Ll~~L~~~~~l~~is~IIIDEaHeR~~~~d~ll~llk~ll~~~~~lkvIlmSATl~ 457 (1009)
+....+ ........|-|..|.... ..-++||||||=- +..-++ +.++... +.++||.|+.
T Consensus 296 ~d~~g~~~~~~~~~~~i~y~~P~~a~---------~~~DllvVDEAAa--IplplL----~~l~~~~---~rv~~sTTIh 357 (758)
T COG1444 296 PDALGEIREVSGDGFRIEYVPPDDAQ---------EEADLLVVDEAAA--IPLPLL----HKLLRRF---PRVLFSTTIH 357 (758)
T ss_pred cccccceeeecCCceeEEeeCcchhc---------ccCCEEEEehhhc--CChHHH----HHHHhhc---CceEEEeeec
Confidence 100000 011133457777776543 1257999999975 454444 4443332 3789999984
No 251
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=95.14 E-value=0.054 Score=56.40 Aligned_cols=48 Identities=27% Similarity=0.299 Sum_probs=29.5
Q ss_pred HHHHhcCCCCCCccEEEEeCCCcCCCcchHHHHHHHHHcccCCCCcEEEe
Q 001817 403 LRRLLVDRSLRGVTHVIVDEIHERGMNEDFLLIVLKELLPRRPELRLILM 452 (1009)
Q Consensus 403 l~~L~~~~~l~~is~IIIDEaHeR~~~~d~ll~llk~ll~~~~~lkvIlm 452 (1009)
.+.+...+......+|||||+|. +..+....+++.+-...++..+|+.
T Consensus 85 ~~~~~~~~~~~~~kviiide~~~--l~~~~~~~Ll~~le~~~~~~~~il~ 132 (188)
T TIGR00678 85 VEFLSRTPQESGRRVVIIEDAER--MNEAAANALLKTLEEPPPNTLFILI 132 (188)
T ss_pred HHHHccCcccCCeEEEEEechhh--hCHHHHHHHHHHhcCCCCCeEEEEE
Confidence 45555566678889999999996 4554444555544333333444444
No 252
>PRK05642 DNA replication initiation factor; Validated
Probab=95.11 E-value=0.075 Score=57.53 Aligned_cols=22 Identities=23% Similarity=0.383 Sum_probs=16.5
Q ss_pred CeEEEEecCCCchhhhHHHHHHH
Q 001817 314 QVVVVSGETGCGKTTQLPQYILE 336 (1009)
Q Consensus 314 ~~vII~apTGSGKTt~~~~~ile 336 (1009)
..++++|++|+|||..+ +.+..
T Consensus 46 ~~l~l~G~~G~GKTHLl-~a~~~ 67 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLL-QAACL 67 (234)
T ss_pred CeEEEECCCCCCHHHHH-HHHHH
Confidence 67889999999999663 34433
No 253
>PRK08116 hypothetical protein; Validated
Probab=95.10 E-value=0.14 Score=56.70 Aligned_cols=27 Identities=30% Similarity=0.316 Sum_probs=19.3
Q ss_pred CCeEEEEecCCCchhhhHHHHHHHHHHH
Q 001817 313 NQVVVVSGETGCGKTTQLPQYILESETE 340 (1009)
Q Consensus 313 ~~~vII~apTGSGKTt~~~~~ile~~~~ 340 (1009)
+..+++.|++|+|||..+. .+...+..
T Consensus 114 ~~gl~l~G~~GtGKThLa~-aia~~l~~ 140 (268)
T PRK08116 114 NVGLLLWGSVGTGKTYLAA-CIANELIE 140 (268)
T ss_pred CceEEEECCCCCCHHHHHH-HHHHHHHH
Confidence 4469999999999996655 44454443
No 254
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=95.01 E-value=0.14 Score=59.89 Aligned_cols=123 Identities=20% Similarity=0.252 Sum_probs=67.6
Q ss_pred CCeEEEEecCCCchhhhHHHHHHHHHHHHhcCCceEEEechhHHHHHHHHHHHHHHHhCCcccceeeeeeeeccccCCCc
Q 001817 313 NQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERGEKLGESVGYKVRLEGMKGRDT 392 (1009)
Q Consensus 313 ~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~IvvtqPrR~La~qva~rva~e~~~~~g~~vGy~vr~e~~~~~~t 392 (1009)
..++.++|++|+||||.+...... + . ..|....++.+=|.|..|....+..++..+..+ +....+ .
T Consensus 100 ~~vi~lvG~~GvGKTTtaaKLA~~-l-~-~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~-----~~~~~~----~-- 165 (429)
T TIGR01425 100 QNVIMFVGLQGSGKTTTCTKLAYY-Y-Q-RKGFKPCLVCADTFRAGAFDQLKQNATKARIPF-----YGSYTE----S-- 165 (429)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH-H-H-HCCCCEEEEcCcccchhHHHHHHHHhhccCCeE-----EeecCC----C--
Confidence 357889999999999888766543 2 2 234455555555778777665555544333211 100000 0
Q ss_pred EEEEEcc-HHHHHHHhcCCCCCCccEEEEeCCCcCCCcchHHHHHHHHHcc-cCCCCcEEEeccCC
Q 001817 393 RLMFCTT-GILLRRLLVDRSLRGVTHVIVDEIHERGMNEDFLLIVLKELLP-RRPELRLILMSATL 456 (1009)
Q Consensus 393 ~Iiv~T~-g~Ll~~L~~~~~l~~is~IIIDEaHeR~~~~d~ll~llk~ll~-~~~~lkvIlmSATl 456 (1009)
.| .+..+.+..- .-.++++||||=+- |....+-++.-++.+.. ..|+..++.++||.
T Consensus 166 -----dp~~i~~~~l~~~-~~~~~DvViIDTaG-r~~~d~~lm~El~~i~~~~~p~e~lLVlda~~ 224 (429)
T TIGR01425 166 -----DPVKIASEGVEKF-KKENFDIIIVDTSG-RHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSI 224 (429)
T ss_pred -----CHHHHHHHHHHHH-HhCCCCEEEEECCC-CCcchHHHHHHHHHHhhhcCCcEEEEEecccc
Confidence 11 1111111100 11468999999998 33333334444444433 44666788899997
No 255
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=95.00 E-value=0.069 Score=67.62 Aligned_cols=44 Identities=18% Similarity=0.194 Sum_probs=29.8
Q ss_pred cCCCCCCccEEEEeCCCcCCCcchHHHHHHHHHcccCCCCcEEEec
Q 001817 408 VDRSLRGVTHVIVDEIHERGMNEDFLLIVLKELLPRRPELRLILMS 453 (1009)
Q Consensus 408 ~~~~l~~is~IIIDEaHeR~~~~d~ll~llk~ll~~~~~lkvIlmS 453 (1009)
..+...+++++||||+|. ++.+-.-.+||.+-.....+.+|+.+
T Consensus 114 ~~p~~~~~KV~IIDEad~--lt~~a~NaLLK~LEEpP~~~~fIl~t 157 (824)
T PRK07764 114 FAPAESRYKIFIIDEAHM--VTPQGFNALLKIVEEPPEHLKFIFAT 157 (824)
T ss_pred hchhcCCceEEEEechhh--cCHHHHHHHHHHHhCCCCCeEEEEEe
Confidence 344567889999999997 56666666666665544555566654
No 256
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=94.99 E-value=0.097 Score=59.59 Aligned_cols=33 Identities=24% Similarity=0.397 Sum_probs=23.6
Q ss_pred HHHHHHHHHcCC--eEEEEecCCCchhhhHHHHHH
Q 001817 303 RDALLKAISENQ--VVVVSGETGCGKTTQLPQYIL 335 (1009)
Q Consensus 303 q~~il~~l~~~~--~vII~apTGSGKTt~~~~~il 335 (1009)
.+.+..++..++ .+++.||+|+|||+.+-.+.-
T Consensus 24 ~~~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~ 58 (337)
T PRK12402 24 VERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALAR 58 (337)
T ss_pred HHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHH
Confidence 344445555555 799999999999987765543
No 257
>PRK06893 DNA replication initiation factor; Validated
Probab=94.99 E-value=0.11 Score=56.18 Aligned_cols=24 Identities=17% Similarity=0.199 Sum_probs=17.9
Q ss_pred cCCeEEEEecCCCchhhhHHHHHH
Q 001817 312 ENQVVVVSGETGCGKTTQLPQYIL 335 (1009)
Q Consensus 312 ~~~~vII~apTGSGKTt~~~~~il 335 (1009)
.+..+++.||+|+|||..+-...-
T Consensus 38 ~~~~l~l~G~~G~GKThL~~ai~~ 61 (229)
T PRK06893 38 QQPFFYIWGGKSSGKSHLLKAVSN 61 (229)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHH
Confidence 356789999999999966554443
No 258
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=94.98 E-value=0.12 Score=60.21 Aligned_cols=22 Identities=32% Similarity=0.477 Sum_probs=17.3
Q ss_pred CCeEEEEecCCCchhhhHHHHH
Q 001817 313 NQVVVVSGETGCGKTTQLPQYI 334 (1009)
Q Consensus 313 ~~~vII~apTGSGKTt~~~~~i 334 (1009)
..+++|.||+|+|||+.+-..+
T Consensus 55 ~~~~lI~G~~GtGKT~l~~~v~ 76 (394)
T PRK00411 55 PLNVLIYGPPGTGKTTTVKKVF 76 (394)
T ss_pred CCeEEEECCCCCCHHHHHHHHH
Confidence 3679999999999996655443
No 259
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.93 E-value=0.058 Score=65.32 Aligned_cols=49 Identities=20% Similarity=0.273 Sum_probs=31.5
Q ss_pred HHHHhcCCCCCCccEEEEeCCCcCCCcchHHHHHHHHHcccCCCCcEEEec
Q 001817 403 LRRLLVDRSLRGVTHVIVDEIHERGMNEDFLLIVLKELLPRRPELRLILMS 453 (1009)
Q Consensus 403 l~~L~~~~~l~~is~IIIDEaHeR~~~~d~ll~llk~ll~~~~~lkvIlmS 453 (1009)
+..+...|...++.++||||+|. +..+-.-.+++.+-...+...+|+.+
T Consensus 108 ~~~~~~~p~~~~~kVvIIDEad~--ls~~a~naLLK~LEepp~~~~fIL~t 156 (527)
T PRK14969 108 LDNAQYAPTRGRFKVYIIDEVHM--LSKSAFNAMLKTLEEPPEHVKFILAT 156 (527)
T ss_pred HHHHhhCcccCCceEEEEcCccc--CCHHHHHHHHHHHhCCCCCEEEEEEe
Confidence 34444455667889999999996 45555556666665544456666654
No 260
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=94.93 E-value=0.07 Score=64.19 Aligned_cols=43 Identities=23% Similarity=0.369 Sum_probs=29.9
Q ss_pred CCCCCCccEEEEeCCCcCCCcchHHHHHHHHHcccCCCCcEEEec
Q 001817 409 DRSLRGVTHVIVDEIHERGMNEDFLLIVLKELLPRRPELRLILMS 453 (1009)
Q Consensus 409 ~~~l~~is~IIIDEaHeR~~~~d~ll~llk~ll~~~~~lkvIlmS 453 (1009)
.|....+.++||||||. +..+..-.+++.+-.-.+...+|+.+
T Consensus 112 ~P~~~~~KVvIIDEad~--Lt~~A~NALLK~LEEpp~~t~FIL~t 154 (535)
T PRK08451 112 KPSMARFKIFIIDEVHM--LTKEAFNALLKTLEEPPSYVKFILAT 154 (535)
T ss_pred CcccCCeEEEEEECccc--CCHHHHHHHHHHHhhcCCceEEEEEE
Confidence 45667899999999997 56666666666665544456666654
No 261
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=94.93 E-value=0.092 Score=57.74 Aligned_cols=22 Identities=32% Similarity=0.688 Sum_probs=17.8
Q ss_pred CCeEEEEecCCCchhhhHHHHH
Q 001817 313 NQVVVVSGETGCGKTTQLPQYI 334 (1009)
Q Consensus 313 ~~~vII~apTGSGKTt~~~~~i 334 (1009)
...+++.||+|+||||.+-.+.
T Consensus 43 ~~~~~l~G~~G~GKTtl~~~l~ 64 (269)
T TIGR03015 43 EGFILITGEVGAGKTTLIRNLL 64 (269)
T ss_pred CCEEEEEcCCCCCHHHHHHHHH
Confidence 4478999999999997776553
No 262
>PHA02244 ATPase-like protein
Probab=94.93 E-value=0.14 Score=58.49 Aligned_cols=33 Identities=27% Similarity=0.375 Sum_probs=26.1
Q ss_pred HHHHHHHHHHcCCeEEEEecCCCchhhhHHHHH
Q 001817 302 ERDALLKAISENQVVVVSGETGCGKTTQLPQYI 334 (1009)
Q Consensus 302 ~q~~il~~l~~~~~vII~apTGSGKTt~~~~~i 334 (1009)
....+..++..+..+++.||||||||+.+-...
T Consensus 108 ~~~ri~r~l~~~~PVLL~GppGtGKTtLA~aLA 140 (383)
T PHA02244 108 ETADIAKIVNANIPVFLKGGAGSGKNHIAEQIA 140 (383)
T ss_pred HHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHH
Confidence 345667778889999999999999997765443
No 263
>PRK10867 signal recognition particle protein; Provisional
Probab=94.89 E-value=0.16 Score=59.66 Aligned_cols=126 Identities=19% Similarity=0.237 Sum_probs=69.8
Q ss_pred CCeEEEEecCCCchhhhHHHHHHHHHHHHhcCCceEEEechhHHHHHHHHHHHHHHHhCCcccceeeeeeeeccccCCCc
Q 001817 313 NQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERGEKLGESVGYKVRLEGMKGRDT 392 (1009)
Q Consensus 313 ~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~IvvtqPrR~La~qva~rva~e~~~~~g~~vGy~vr~e~~~~~~t 392 (1009)
..+++++|++||||||.+..+..... . ..+....++..=+.|..|....+.+++..+..+ |.. . ..
T Consensus 100 p~vI~~vG~~GsGKTTtaakLA~~l~-~-~~G~kV~lV~~D~~R~aa~eQL~~~a~~~gv~v-----~~~---~-~~--- 165 (433)
T PRK10867 100 PTVIMMVGLQGAGKTTTAGKLAKYLK-K-KKKKKVLLVAADVYRPAAIEQLKTLGEQIGVPV-----FPS---G-DG--- 165 (433)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHH-H-hcCCcEEEEEccccchHHHHHHHHHHhhcCCeE-----Eec---C-CC---
Confidence 35788999999999998877665422 1 124556666666888877655555554433221 000 0 00
Q ss_pred EEEEEccHHHHHHHhcCCCCCCccEEEEeCCCcCCCcchHHHHHHHHHcc-cCCCCcEEEeccCCC
Q 001817 393 RLMFCTTGILLRRLLVDRSLRGVTHVIVDEIHERGMNEDFLLIVLKELLP-RRPELRLILMSATLN 457 (1009)
Q Consensus 393 ~Iiv~T~g~Ll~~L~~~~~l~~is~IIIDEaHeR~~~~d~ll~llk~ll~-~~~~lkvIlmSATl~ 457 (1009)
..|..+...........++++||||=+-. ....+-+...+..+.. ..|+--++.++|+..
T Consensus 166 ----~dp~~i~~~a~~~a~~~~~DvVIIDTaGr-l~~d~~lm~eL~~i~~~v~p~evllVlda~~g 226 (433)
T PRK10867 166 ----QDPVDIAKAALEEAKENGYDVVIVDTAGR-LHIDEELMDELKAIKAAVNPDEILLVVDAMTG 226 (433)
T ss_pred ----CCHHHHHHHHHHHHHhcCCCEEEEeCCCC-cccCHHHHHHHHHHHHhhCCCeEEEEEecccH
Confidence 12333333222111245789999999973 2223333343334332 345555778888873
No 264
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=94.88 E-value=0.048 Score=55.52 Aligned_cols=53 Identities=21% Similarity=0.244 Sum_probs=35.7
Q ss_pred HHHHHhcCCCCCCccEEEEeCCCcCCCcchHHHHHHHHHcccCCCCcEEEeccCC
Q 001817 402 LLRRLLVDRSLRGVTHVIVDEIHERGMNEDFLLIVLKELLPRRPELRLILMSATL 456 (1009)
Q Consensus 402 Ll~~L~~~~~l~~is~IIIDEaHeR~~~~d~ll~llk~ll~~~~~lkvIlmSATl 456 (1009)
+...+...+.-..++++||||||. ++.+..-++||.+-.-..+..+|++|-.+
T Consensus 90 i~~~~~~~~~~~~~KviiI~~ad~--l~~~a~NaLLK~LEepp~~~~fiL~t~~~ 142 (162)
T PF13177_consen 90 IIEFLSLSPSEGKYKVIIIDEADK--LTEEAQNALLKTLEEPPENTYFILITNNP 142 (162)
T ss_dssp HHHHCTSS-TTSSSEEEEEETGGG--S-HHHHHHHHHHHHSTTTTEEEEEEES-G
T ss_pred HHHHHHHHHhcCCceEEEeehHhh--hhHHHHHHHHHHhcCCCCCEEEEEEECCh
Confidence 444444445557899999999997 77777778887776655566777766554
No 265
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=94.88 E-value=0.064 Score=64.35 Aligned_cols=39 Identities=18% Similarity=0.203 Sum_probs=25.5
Q ss_pred HHHHHhcCCCCCCccEEEEeCCCcCCCcchHHHHHHHHHcc
Q 001817 402 LLRRLLVDRSLRGVTHVIVDEIHERGMNEDFLLIVLKELLP 442 (1009)
Q Consensus 402 Ll~~L~~~~~l~~is~IIIDEaHeR~~~~d~ll~llk~ll~ 442 (1009)
++......|...+..++||||+|. +.......+++.+-.
T Consensus 116 iie~a~~~P~~~~~KVvIIDEa~~--Ls~~a~naLLk~LEe 154 (507)
T PRK06645 116 IIESAEYKPLQGKHKIFIIDEVHM--LSKGAFNALLKTLEE 154 (507)
T ss_pred HHHHHHhccccCCcEEEEEEChhh--cCHHHHHHHHHHHhh
Confidence 344444556778899999999996 444445555555443
No 266
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=94.86 E-value=0.19 Score=59.80 Aligned_cols=47 Identities=17% Similarity=0.113 Sum_probs=28.4
Q ss_pred CeEEEEecCCCchhhhHHHHHHHHHHHHhcCCceEEEechhHHHHHHHHHH
Q 001817 314 QVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSE 364 (1009)
Q Consensus 314 ~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~IvvtqPrR~La~qva~ 364 (1009)
+.++|.|++|+|||..+ +.+...+... ..+.+++++.+ ..+...+..
T Consensus 142 npl~i~G~~G~GKTHLl-~Ai~~~l~~~--~~~~~v~yv~~-~~f~~~~~~ 188 (450)
T PRK14087 142 NPLFIYGESGMGKTHLL-KAAKNYIESN--FSDLKVSYMSG-DEFARKAVD 188 (450)
T ss_pred CceEEECCCCCcHHHHH-HHHHHHHHHh--CCCCeEEEEEH-HHHHHHHHH
Confidence 45889999999999555 5555544332 23456666543 344444433
No 267
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=94.83 E-value=0.034 Score=69.88 Aligned_cols=115 Identities=18% Similarity=0.097 Sum_probs=65.5
Q ss_pred HHHHHHcCCeEEEEecCCCchhhhHHHHHHHHHHHHhcCCceEEEechhHHHHHHHHHH---HHHHHhCCcccceeeeee
Q 001817 306 LLKAISENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSE---RVAAERGEKLGESVGYKV 382 (1009)
Q Consensus 306 il~~l~~~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~IvvtqPrR~La~qva~---rva~e~~~~~g~~vGy~v 382 (1009)
++-.+.-++--|....||=|||+++.++++-..+ .|.++.| ||+.- -||.-=++ .+...+|..+|....-..
T Consensus 144 LiGgivLh~G~IAEM~TGEGKTLvatlp~yLnAL---~G~gVHv-VTvND-YLA~RDaewm~p~y~flGLtVg~i~~~~~ 218 (1025)
T PRK12900 144 LIGGIVLHSGKISEMATGEGKTLVSTLPTFLNAL---TGRGVHV-VTVND-YLAQRDKEWMNPVFEFHGLSVGVILNTMR 218 (1025)
T ss_pred HhhhHHhhcCCccccCCCCCcchHhHHHHHHHHH---cCCCcEE-Eeech-HhhhhhHHHHHHHHHHhCCeeeeeCCCCC
Confidence 5555555565678999999999999888876554 3444444 44332 23322222 233333444433211111
Q ss_pred eeccccCCCcEEEEEccHHH-----HHHHhcCC---CCCCccEEEEeCCCc
Q 001817 383 RLEGMKGRDTRLMFCTTGIL-----LRRLLVDR---SLRGVTHVIVDEIHE 425 (1009)
Q Consensus 383 r~e~~~~~~t~Iiv~T~g~L-----l~~L~~~~---~l~~is~IIIDEaHe 425 (1009)
..+....-.++|+|+|..-+ -+.+...+ ....+.+.|||||+.
T Consensus 219 ~~~Rr~aY~~DItYgTn~EfGFDYLRDnma~~~~~~vqR~~~faIVDEvDS 269 (1025)
T PRK12900 219 PEERREQYLCDITYGTNNEFGFDYLRDNMAGTPEEMVQRDFYFAIVDEVDS 269 (1025)
T ss_pred HHHHHHhCCCcceecCCCccccccchhccccchhhhhccCCceEEEechhh
Confidence 11222335689999998543 33333222 457788999999994
No 268
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.79 E-value=0.042 Score=66.03 Aligned_cols=45 Identities=27% Similarity=0.292 Sum_probs=27.8
Q ss_pred HhcCCCCCCccEEEEeCCCcCCCcchHHHHHHHHHcccCCCCcEEEe
Q 001817 406 LLVDRSLRGVTHVIVDEIHERGMNEDFLLIVLKELLPRRPELRLILM 452 (1009)
Q Consensus 406 L~~~~~l~~is~IIIDEaHeR~~~~d~ll~llk~ll~~~~~lkvIlm 452 (1009)
+...+......+|||||+|. +..+.+..+++.+-...+...+|+.
T Consensus 108 ~~~~p~~~~~kVVIIDEad~--ls~~a~naLLk~LEep~~~t~~Il~ 152 (504)
T PRK14963 108 VLLAPLRGGRKVYILDEAHM--MSKSAFNALLKTLEEPPEHVIFILA 152 (504)
T ss_pred HhhccccCCCeEEEEECccc--cCHHHHHHHHHHHHhCCCCEEEEEE
Confidence 33345677889999999995 4555555666665443334444443
No 269
>PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=94.77 E-value=0.074 Score=63.85 Aligned_cols=136 Identities=21% Similarity=0.193 Sum_probs=77.9
Q ss_pred CeEEEEecCCCchhhhHHHHHHHHHHHHhcCCceEEEechhHHHHHHHHHHHHHHHhCCcc--cceeeeeeeeccccCCC
Q 001817 314 QVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERGEKL--GESVGYKVRLEGMKGRD 391 (1009)
Q Consensus 314 ~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~IvvtqPrR~La~qva~rva~e~~~~~--g~~vGy~vr~e~~~~~~ 391 (1009)
+.+++.-|=|.|||+.+....+-.+... ...+..|+++++++.-|..+.+.+........ ....+..+ .....
T Consensus 23 ~~~~l~v~RkNGKS~l~a~i~ly~l~~~-g~~~~~i~~~A~~~~QA~~~f~~~~~~i~~~~~l~~~~~~~~----~~~~~ 97 (477)
T PF03354_consen 23 REVYLEVPRKNGKSTLAAAIALYMLFLD-GEPGAEIYCAANTRDQAKIVFDEAKKMIEASPELRKRKKPKI----IKSNK 97 (477)
T ss_pred EEEEEEEcCccCccHHHHHHHHHHHhcC-CccCceEEEEeCCHHHHHHHHHHHHHHHHhChhhccchhhhh----hhhhc
Confidence 3477788999999987766555444332 22356899999999999999988877653321 11111111 00111
Q ss_pred cEEEEEccHHHHHHHhcCC---CCCCccEEEEeCCCcCCCcchHHHHHHHHHcccCCCCcEEEe-ccCC
Q 001817 392 TRLMFCTTGILLRRLLVDR---SLRGVTHVIVDEIHERGMNEDFLLIVLKELLPRRPELRLILM-SATL 456 (1009)
Q Consensus 392 t~Iiv~T~g~Ll~~L~~~~---~l~~is~IIIDEaHeR~~~~d~ll~llk~ll~~~~~lkvIlm-SATl 456 (1009)
..|.+-.++..++.+..++ .-.+.+++|+||+|+ ...+-+...++.-+..+++..++.. ||..
T Consensus 98 ~~i~~~~~~s~~~~~s~~~~~~dG~~~~~~i~DE~h~--~~~~~~~~~l~~g~~~r~~pl~~~ISTag~ 164 (477)
T PF03354_consen 98 KEIEFPKTGSFFKALSSDADSLDGLNPSLAIFDELHA--HKDDELYDALESGMGARPNPLIIIISTAGD 164 (477)
T ss_pred eEEEEcCCCcEEEEEecCCCCccCCCCceEEEeCCCC--CCCHHHHHHHHhhhccCCCceEEEEeCCCC
Confidence 2233322233333222222 223568999999997 3444355666666666777665554 4444
No 270
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=94.76 E-value=0.042 Score=62.04 Aligned_cols=54 Identities=20% Similarity=0.258 Sum_probs=37.1
Q ss_pred HHHHHHHHHHcCCeEEEEecCCCchhhhHHHHHHHHHHHHhcCCceEEEechhHHHH
Q 001817 302 ERDALLKAISENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRIS 358 (1009)
Q Consensus 302 ~q~~il~~l~~~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~IvvtqPrR~L 358 (1009)
+.+.+..++..+.+++|+|+|||||||.+- .++..+.. .....+|+++..+.++
T Consensus 133 ~~~~L~~~v~~~~nilI~G~tGSGKTTll~-aL~~~i~~--~~~~~rivtiEd~~El 186 (323)
T PRK13833 133 QASVIRSAIDSRLNIVISGGTGSGKTTLAN-AVIAEIVA--SAPEDRLVILEDTAEI 186 (323)
T ss_pred HHHHHHHHHHcCCeEEEECCCCCCHHHHHH-HHHHHHhc--CCCCceEEEecCCccc
Confidence 335566777888999999999999998763 44444322 1234578887766665
No 271
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=94.74 E-value=0.15 Score=62.58 Aligned_cols=50 Identities=18% Similarity=0.302 Sum_probs=32.9
Q ss_pred HHHHHhcCCCCCCccEEEEeCCCcCCCcchHHHHHHHHHcccCCCCcEEEec
Q 001817 402 LLRRLLVDRSLRGVTHVIVDEIHERGMNEDFLLIVLKELLPRRPELRLILMS 453 (1009)
Q Consensus 402 Ll~~L~~~~~l~~is~IIIDEaHeR~~~~d~ll~llk~ll~~~~~lkvIlmS 453 (1009)
++..+...+....+++|||||+|. ++.+-.-.+++.+-.-.+...+|+.+
T Consensus 120 Iie~~~~~P~~a~~KVvIIDEad~--Ls~~a~naLLKtLEePp~~~~fIl~t 169 (598)
T PRK09111 120 IIESVRYRPVSARYKVYIIDEVHM--LSTAAFNALLKTLEEPPPHVKFIFAT 169 (598)
T ss_pred HHHHHHhchhcCCcEEEEEEChHh--CCHHHHHHHHHHHHhCCCCeEEEEEe
Confidence 444455556778899999999997 55555555566554444556666654
No 272
>PHA03368 DNA packaging terminase subunit 1; Provisional
Probab=94.72 E-value=0.44 Score=57.88 Aligned_cols=159 Identities=18% Similarity=0.177 Sum_probs=97.4
Q ss_pred HHhhcCCCCHHHHHHHHHHHHcCCeEEEEecCCCchhhhHHHHHHHHHHHHhcCCceEEEechhHHHHHHHHHHHHHHHh
Q 001817 291 LEFRRSLPSYKERDALLKAISENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAER 370 (1009)
Q Consensus 291 ~~~r~~LPi~~~q~~il~~l~~~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~IvvtqPrR~La~qva~rva~e~ 370 (1009)
++.-.++|... +++++.. +.+-.++..|==.|||..+. +++-.+... -.+..|++++|.+-.+..+.+++...+
T Consensus 235 lk~~Fdi~~~s--~~~~~~f-kqk~tVflVPRR~GKTwivv-~iI~~ll~s--~~Gi~IgytAH~~~ts~~vF~eI~~~l 308 (738)
T PHA03368 235 LRTVFNTPLFS--DAAVRHF-RQRATVFLVPRRHGKTWFLV-PLIALALAT--FRGIKIGYTAHIRKATEPVFEEIGARL 308 (738)
T ss_pred HHHHcCCcccc--HHHHHHh-hccceEEEecccCCchhhHH-HHHHHHHHh--CCCCEEEEEcCcHHHHHHHHHHHHHHH
Confidence 33334555543 5666665 45667778899999998666 444333322 235689999999999999999988754
Q ss_pred CCcc-ccee----eeee--eeccccCCCcEEEEEccHHHHHHHhcCCCCCCccEEEEeCCCcCCCcchHHHHHHHHHccc
Q 001817 371 GEKL-GESV----GYKV--RLEGMKGRDTRLMFCTTGILLRRLLVDRSLRGVTHVIVDEIHERGMNEDFLLIVLKELLPR 443 (1009)
Q Consensus 371 ~~~~-g~~v----Gy~v--r~e~~~~~~t~Iiv~T~g~Ll~~L~~~~~l~~is~IIIDEaHeR~~~~d~ll~llk~ll~~ 443 (1009)
.... +..+ |-.+ .+.+ .....|.|.+..- .+...-.+++++|||||+. +..+.+..++--+...
T Consensus 309 e~~f~~~~v~~vkGe~I~i~f~n--G~kstI~FaSarn-----tNsiRGqtfDLLIVDEAqF--Ik~~al~~ilp~l~~~ 379 (738)
T PHA03368 309 RQWFGASRVDHVKGETISFSFPD--GSRSTIVFASSHN-----TNGIRGQDFNLLFVDEANF--IRPDAVQTIMGFLNQT 379 (738)
T ss_pred hhhcchhheeeecCcEEEEEecC--CCccEEEEEeccC-----CCCccCCcccEEEEechhh--CCHHHHHHHHHHHhcc
Confidence 3111 1111 2111 1111 1123666664310 0001234789999999998 7777777777444443
Q ss_pred CCCCcEEEeccCCCHHHHHhhhC
Q 001817 444 RPELRLILMSATLNAELFSSYFG 466 (1009)
Q Consensus 444 ~~~lkvIlmSATl~~~~~~~yf~ 466 (1009)
+.++|.+|-|-..+.-..|+.
T Consensus 380 --n~k~I~ISS~Ns~~~sTSFL~ 400 (738)
T PHA03368 380 --NCKIIFVSSTNTGKASTSFLY 400 (738)
T ss_pred --CccEEEEecCCCCccchHHHH
Confidence 789999999976665555553
No 273
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.71 E-value=0.071 Score=64.97 Aligned_cols=32 Identities=34% Similarity=0.414 Sum_probs=22.5
Q ss_pred HHHHHHHHcC---CeEEEEecCCCchhhhHHHHHH
Q 001817 304 DALLKAISEN---QVVVVSGETGCGKTTQLPQYIL 335 (1009)
Q Consensus 304 ~~il~~l~~~---~~vII~apTGSGKTt~~~~~il 335 (1009)
..+..++.++ ..+|++||.|+|||+.+-.+.-
T Consensus 26 ~~L~~ai~~~ri~ha~Lf~GPpG~GKTtiArilAk 60 (624)
T PRK14959 26 AILSRAAQENRVAPAYLFSGTRGVGKTTIARIFAK 60 (624)
T ss_pred HHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHH
Confidence 3344445554 3588999999999988876553
No 274
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.67 E-value=0.076 Score=63.34 Aligned_cols=30 Identities=27% Similarity=0.430 Sum_probs=21.1
Q ss_pred HHHHHHcCC---eEEEEecCCCchhhhHHHHHH
Q 001817 306 LLKAISENQ---VVVVSGETGCGKTTQLPQYIL 335 (1009)
Q Consensus 306 il~~l~~~~---~vII~apTGSGKTt~~~~~il 335 (1009)
+..++.+++ .++++||+|+||||.+-.+.-
T Consensus 26 L~~~i~~~~l~~~~Lf~GPpGtGKTTlA~~lA~ 58 (472)
T PRK14962 26 IINALKKNSISHAYIFAGPRGTGKTTVARILAK 58 (472)
T ss_pred HHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 344455543 379999999999988765543
No 275
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.66 E-value=0.1 Score=63.98 Aligned_cols=50 Identities=20% Similarity=0.300 Sum_probs=31.3
Q ss_pred HHHHHhcCCCCCCccEEEEeCCCcCCCcchHHHHHHHHHcccCCCCcEEEec
Q 001817 402 LLRRLLVDRSLRGVTHVIVDEIHERGMNEDFLLIVLKELLPRRPELRLILMS 453 (1009)
Q Consensus 402 Ll~~L~~~~~l~~is~IIIDEaHeR~~~~d~ll~llk~ll~~~~~lkvIlmS 453 (1009)
++..+...+....++++||||+|. +..+-.-.+++.+-.-.+...+|+.+
T Consensus 112 li~~~~~~p~~g~~KV~IIDEvh~--Ls~~a~NaLLKtLEEPP~~~~fIL~T 161 (618)
T PRK14951 112 LLEQAVYKPVQGRFKVFMIDEVHM--LTNTAFNAMLKTLEEPPEYLKFVLAT 161 (618)
T ss_pred HHHHHHhCcccCCceEEEEEChhh--CCHHHHHHHHHhcccCCCCeEEEEEE
Confidence 334444455667899999999996 56665556665554433445565544
No 276
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=94.64 E-value=0.16 Score=58.61 Aligned_cols=62 Identities=23% Similarity=0.156 Sum_probs=39.2
Q ss_pred EEEEEccHHHHHHHhcCCCCCCccEEEEeCCCcCCCcchHHHHHHHHHcccCCCCcEEEeccCC
Q 001817 393 RLMFCTTGILLRRLLVDRSLRGVTHVIVDEIHERGMNEDFLLIVLKELLPRRPELRLILMSATL 456 (1009)
Q Consensus 393 ~Iiv~T~g~Ll~~L~~~~~l~~is~IIIDEaHeR~~~~d~ll~llk~ll~~~~~lkvIlmSATl 456 (1009)
.|.|-..-.+.+.+...+......+|||||+|. ++......+++.+-.-.++..+|++|...
T Consensus 120 ~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~--m~~~aanaLLK~LEepp~~~~~IL~t~~~ 181 (365)
T PRK07471 120 VITVDEVRELISFFGLTAAEGGWRVVIVDTADE--MNANAANALLKVLEEPPARSLFLLVSHAP 181 (365)
T ss_pred cccHHHHHHHHHHhCcCcccCCCEEEEEechHh--cCHHHHHHHHHHHhcCCCCeEEEEEECCc
Confidence 344433333445554455667889999999997 67777777777765443455566655554
No 277
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=94.64 E-value=0.21 Score=58.75 Aligned_cols=125 Identities=22% Similarity=0.256 Sum_probs=68.8
Q ss_pred CeEEEEecCCCchhhhHHHHHHHHHHHHhcCCceEEEechhHHHHHHHHHHHHHHHhCCcccceeeeeeeeccccCCCcE
Q 001817 314 QVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERGEKLGESVGYKVRLEGMKGRDTR 393 (1009)
Q Consensus 314 ~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~IvvtqPrR~La~qva~rva~e~~~~~g~~vGy~vr~e~~~~~~t~ 393 (1009)
.+++++|++|+||||.+..++..... ..+....++.+=+.|..|.+..++.+...+..+- .. . ...
T Consensus 100 ~vi~~vG~~GsGKTTtaakLA~~l~~--~~g~kV~lV~~D~~R~~a~~QL~~~a~~~gvp~~-----~~---~-~~~--- 165 (428)
T TIGR00959 100 TVILMVGLQGSGKTTTCGKLAYYLKK--KQGKKVLLVACDLYRPAAIEQLKVLGQQVGVPVF-----AL---G-KGQ--- 165 (428)
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHH--hCCCeEEEEeccccchHHHHHHHHHHHhcCCceE-----ec---C-CCC---
Confidence 57889999999999998776655221 2344555666667887776655555554442211 00 0 001
Q ss_pred EEEEccHHHHHHHhcCCCCCCccEEEEeCCCcCCCcchHHHHHHHHHcc-cCCCCcEEEeccCCC
Q 001817 394 LMFCTTGILLRRLLVDRSLRGVTHVIVDEIHERGMNEDFLLIVLKELLP-RRPELRLILMSATLN 457 (1009)
Q Consensus 394 Iiv~T~g~Ll~~L~~~~~l~~is~IIIDEaHeR~~~~d~ll~llk~ll~-~~~~lkvIlmSATl~ 457 (1009)
.|..+...........++++||||=+-. ....+.++..+..+.. ..|+--++.++||..
T Consensus 166 ----~P~~i~~~al~~~~~~~~DvVIIDTaGr-~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tg 225 (428)
T TIGR00959 166 ----SPVEIARRALEYAKENGFDVVIVDTAGR-LQIDEELMEELAAIKEILNPDEILLVVDAMTG 225 (428)
T ss_pred ----CHHHHHHHHHHHHHhcCCCEEEEeCCCc-cccCHHHHHHHHHHHHhhCCceEEEEEeccch
Confidence 1222221111111235689999999983 3333334444444433 235555777888863
No 278
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=94.63 E-value=0.058 Score=60.56 Aligned_cols=94 Identities=24% Similarity=0.308 Sum_probs=56.1
Q ss_pred HHHHHHHHHHcCCeEEEEecCCCchhhhHHHHHHHHHHHHhcCCceEEEechhHHHHHHHHHHHHHHHhCCcccceeeee
Q 001817 302 ERDALLKAISENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERGEKLGESVGYK 381 (1009)
Q Consensus 302 ~q~~il~~l~~~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~IvvtqPrR~La~qva~rva~e~~~~~g~~vGy~ 381 (1009)
+.+.+..++..+.+++|+|+|||||||.+- .++..+.. .....+|+++..+.++... ....+.+.
T Consensus 121 ~~~~L~~~v~~~~~ilI~G~tGSGKTTll~-al~~~i~~--~~~~~ri~tiEd~~El~~~------------~~~~v~~~ 185 (299)
T TIGR02782 121 QRDVLREAVLARKNILVVGGTGSGKTTLAN-ALLAEIAK--NDPTDRVVIIEDTRELQCA------------APNVVQLR 185 (299)
T ss_pred HHHHHHHHHHcCCeEEEECCCCCCHHHHHH-HHHHHhhc--cCCCceEEEECCchhhcCC------------CCCEEEEE
Confidence 345566677888999999999999998764 34443321 1224578888777765321 11122221
Q ss_pred eeeccccCCCcEEEEEccHHHHHHHhcCCCCCCccEEEEeCCC
Q 001817 382 VRLEGMKGRDTRLMFCTTGILLRRLLVDRSLRGVTHVIVDEIH 424 (1009)
Q Consensus 382 vr~e~~~~~~t~Iiv~T~g~Ll~~L~~~~~l~~is~IIIDEaH 424 (1009)
.+ .+. .|...+++..++ .+.+.||+.|+=
T Consensus 186 ~~------~~~----~~~~~~l~~aLR----~~pD~iivGEiR 214 (299)
T TIGR02782 186 TS------DDA----ISMTRLLKATLR----LRPDRIIVGEVR 214 (299)
T ss_pred ec------CCC----CCHHHHHHHHhc----CCCCEEEEeccC
Confidence 11 111 156666655442 356899999995
No 279
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=94.58 E-value=0.18 Score=58.09 Aligned_cols=25 Identities=32% Similarity=0.562 Sum_probs=18.6
Q ss_pred CCeEEEEecCCCchhhhHHHHHHHHH
Q 001817 313 NQVVVVSGETGCGKTTQLPQYILESE 338 (1009)
Q Consensus 313 ~~~vII~apTGSGKTt~~~~~ile~~ 338 (1009)
..+++|.||+|+|||+.+ ..+++.+
T Consensus 40 ~~~i~I~G~~GtGKT~l~-~~~~~~l 64 (365)
T TIGR02928 40 PSNVFIYGKTGTGKTAVT-KYVMKEL 64 (365)
T ss_pred CCcEEEECCCCCCHHHHH-HHHHHHH
Confidence 368999999999999665 4444444
No 280
>PRK12377 putative replication protein; Provisional
Probab=94.56 E-value=0.41 Score=52.21 Aligned_cols=22 Identities=27% Similarity=0.273 Sum_probs=17.4
Q ss_pred CCeEEEEecCCCchhhhHHHHH
Q 001817 313 NQVVVVSGETGCGKTTQLPQYI 334 (1009)
Q Consensus 313 ~~~vII~apTGSGKTt~~~~~i 334 (1009)
...+++.|++|+|||..+...+
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa 122 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIG 122 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHH
Confidence 4689999999999996655433
No 281
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.54 E-value=0.082 Score=64.78 Aligned_cols=50 Identities=22% Similarity=0.303 Sum_probs=31.3
Q ss_pred HHHHHhcCCCCCCccEEEEeCCCcCCCcchHHHHHHHHHcccCCCCcEEEec
Q 001817 402 LLRRLLVDRSLRGVTHVIVDEIHERGMNEDFLLIVLKELLPRRPELRLILMS 453 (1009)
Q Consensus 402 Ll~~L~~~~~l~~is~IIIDEaHeR~~~~d~ll~llk~ll~~~~~lkvIlmS 453 (1009)
+...+...|...+++++||||+|. +..+-.-.+++.+-.-.+...+|+.+
T Consensus 107 l~~~~~~~p~~~~~KVvIIdev~~--Lt~~a~naLLk~LEepp~~~~fIl~t 156 (576)
T PRK14965 107 LRENVKYLPSRSRYKIFIIDEVHM--LSTNAFNALLKTLEEPPPHVKFIFAT 156 (576)
T ss_pred HHHHHHhccccCCceEEEEEChhh--CCHHHHHHHHHHHHcCCCCeEEEEEe
Confidence 344444456678899999999996 55555555555554433445555544
No 282
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=94.53 E-value=0.19 Score=59.09 Aligned_cols=37 Identities=22% Similarity=0.301 Sum_probs=24.4
Q ss_pred CeEEEEecCCCchhhhHHHHHHHHHHHHhcCCceEEEech
Q 001817 314 QVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQ 353 (1009)
Q Consensus 314 ~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~Ivvtq 353 (1009)
+.+++.|++|+|||..+ +.+...+... ..+..++++.
T Consensus 137 n~l~l~G~~G~GKThL~-~ai~~~l~~~--~~~~~v~yi~ 173 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLL-HAIGNEILEN--NPNAKVVYVS 173 (405)
T ss_pred CeEEEECCCCCcHHHHH-HHHHHHHHHh--CCCCcEEEEE
Confidence 46789999999999655 5555555432 2245666653
No 283
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=94.49 E-value=0.057 Score=55.78 Aligned_cols=46 Identities=26% Similarity=0.334 Sum_probs=29.9
Q ss_pred eEEEEecCCCchhhhHHHHHHHHHHHHhcCCceEEEechhHHHHHHHHHHHH
Q 001817 315 VVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERV 366 (1009)
Q Consensus 315 ~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~IvvtqPrR~La~qva~rv 366 (1009)
.++|.||+|+|||+.+.+++.+.+. .+..+.++-+. +...++.++.
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~~~---~g~~v~~~s~e---~~~~~~~~~~ 46 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGLA---RGEPGLYVTLE---ESPEELIENA 46 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHH---CCCcEEEEECC---CCHHHHHHHH
Confidence 3689999999999999999887652 33444444333 3344444444
No 284
>PRK08084 DNA replication initiation factor; Provisional
Probab=94.44 E-value=0.12 Score=56.10 Aligned_cols=22 Identities=14% Similarity=0.235 Sum_probs=17.5
Q ss_pred CCeEEEEecCCCchhhhHHHHH
Q 001817 313 NQVVVVSGETGCGKTTQLPQYI 334 (1009)
Q Consensus 313 ~~~vII~apTGSGKTt~~~~~i 334 (1009)
+..+++.||+|||||+.+-.+.
T Consensus 45 ~~~l~l~Gp~G~GKThLl~a~~ 66 (235)
T PRK08084 45 SGYIYLWSREGAGRSHLLHAAC 66 (235)
T ss_pred CCeEEEECCCCCCHHHHHHHHH
Confidence 4689999999999997665444
No 285
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=94.40 E-value=0.098 Score=57.95 Aligned_cols=122 Identities=17% Similarity=0.203 Sum_probs=64.8
Q ss_pred CeEEEEecCCCchhhhHHHHHHHHHHHHh-cCCc-eEEEechhHHHHHHHHHHHHHHHhCCcccceeeeeeeeccccCCC
Q 001817 314 QVVVVSGETGCGKTTQLPQYILESETEAA-RGAA-CSIICTQPRRISAMAVSERVAAERGEKLGESVGYKVRLEGMKGRD 391 (1009)
Q Consensus 314 ~~vII~apTGSGKTt~~~~~ile~~~~~~-~~~~-~~IvvtqPrR~La~qva~rva~e~~~~~g~~vGy~vr~e~~~~~~ 391 (1009)
.+++|+|+||.|||+.+-.|.-.+-.... .... +.+++-.|...-....+..+-..+|......-. ...
T Consensus 62 p~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~~~~~~--------~~~- 132 (302)
T PF05621_consen 62 PNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGAPYRPRDR--------VAK- 132 (302)
T ss_pred CceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCcccCCCCC--------HHH-
Confidence 58999999999999877766654321111 1112 334444476666666777776666654322100 000
Q ss_pred cEEEEEccHHHHHHHhcCCCCCCccEEEEeCCCc--CCC--cchHHHHHHHHHcccCCCCcEEEeccCC
Q 001817 392 TRLMFCTTGILLRRLLVDRSLRGVTHVIVDEIHE--RGM--NEDFLLIVLKELLPRRPELRLILMSATL 456 (1009)
Q Consensus 392 t~Iiv~T~g~Ll~~L~~~~~l~~is~IIIDEaHe--R~~--~~d~ll~llk~ll~~~~~lkvIlmSATl 456 (1009)
.+ ...++.+. --+++++||||+|. .|- ...-.+..+|.+-+. -++.+|+. .|.
T Consensus 133 -----~~-~~~~~llr----~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~Ne-L~ipiV~v-Gt~ 189 (302)
T PF05621_consen 133 -----LE-QQVLRLLR----RLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNE-LQIPIVGV-GTR 189 (302)
T ss_pred -----HH-HHHHHHHH----HcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhc-cCCCeEEe-ccH
Confidence 00 11122222 23678999999995 221 223455666666332 23445554 453
No 286
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=94.35 E-value=0.26 Score=61.46 Aligned_cols=23 Identities=26% Similarity=0.469 Sum_probs=16.6
Q ss_pred eEEEEecCCCchhhhHHHHHHHHH
Q 001817 315 VVVVSGETGCGKTTQLPQYILESE 338 (1009)
Q Consensus 315 ~vII~apTGSGKTt~~~~~ile~~ 338 (1009)
.+.|.|+||+|||+.+- ++++.+
T Consensus 783 vLYIyG~PGTGKTATVK-~VLrEL 805 (1164)
T PTZ00112 783 ILYISGMPGTGKTATVY-SVIQLL 805 (1164)
T ss_pred eEEEECCCCCCHHHHHH-HHHHHH
Confidence 35699999999996554 444444
No 287
>PRK11054 helD DNA helicase IV; Provisional
Probab=94.33 E-value=0.19 Score=62.68 Aligned_cols=98 Identities=16% Similarity=0.099 Sum_probs=65.4
Q ss_pred hHHHHHhhcCCCCHHHHHHHHHHHHcCCeEEEEecCCCchhhhHHHHHHHHHHHHhcCCceEEEechhHHHHHHHHHHHH
Q 001817 287 GQKMLEFRRSLPSYKERDALLKAISENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERV 366 (1009)
Q Consensus 287 ~~~l~~~r~~LPi~~~q~~il~~l~~~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~IvvtqPrR~La~qva~rv 366 (1009)
+...+..-..-|....|.+.+.. ....++|.|..|||||+.+.--+...+ ..+......|+++..++.+|..+.+|+
T Consensus 185 ~~~~f~~~e~~~L~~~Q~~av~~--~~~~~lV~agaGSGKT~vl~~r~ayLl-~~~~~~~~~IL~ltft~~AA~em~eRL 261 (684)
T PRK11054 185 YADFFSQVESSPLNPSQARAVVN--GEDSLLVLAGAGSGKTSVLVARAGWLL-ARGQAQPEQILLLAFGRQAAEEMDERI 261 (684)
T ss_pred HHHHHHhccCCCCCHHHHHHHhC--CCCCeEEEEeCCCCHHHHHHHHHHHHH-HhCCCCHHHeEEEeccHHHHHHHHHHH
Confidence 44455544556787777666543 445678899999999987765443322 222233457888889999999999999
Q ss_pred HHHhCCcccceeeeeeeeccccCCCcEEEEEccHHHHHHH
Q 001817 367 AAERGEKLGESVGYKVRLEGMKGRDTRLMFCTTGILLRRL 406 (1009)
Q Consensus 367 a~e~~~~~g~~vGy~vr~e~~~~~~t~Iiv~T~g~Ll~~L 406 (1009)
....|. ..|.+.|--.+...+
T Consensus 262 ~~~lg~-------------------~~v~v~TFHSlal~I 282 (684)
T PRK11054 262 RERLGT-------------------EDITARTFHALALHI 282 (684)
T ss_pred HHhcCC-------------------CCcEEEeHHHHHHHH
Confidence 766530 246778876555444
No 288
>COG3421 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.32 E-value=0.25 Score=58.46 Aligned_cols=134 Identities=23% Similarity=0.243 Sum_probs=69.3
Q ss_pred EecCCCchhhhHHHHHHHHHHHHhcCCceEEEechhHHHHHHHHHH---HHH-H-HhCCc--c-cceee-eeeeeccccC
Q 001817 319 SGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSE---RVA-A-ERGEK--L-GESVG-YKVRLEGMKG 389 (1009)
Q Consensus 319 ~apTGSGKTt~~~~~ile~~~~~~~~~~~~IvvtqPrR~La~qva~---rva-~-e~~~~--~-g~~vG-y~vr~e~~~~ 389 (1009)
...||||||.+..-.|++... +|-+.-+.++--+-+|-...-. .+. + .+.+. . +..+. -.|..-+..+
T Consensus 3 ~matgsgkt~~ma~lil~~y~---kgyr~flffvnq~nilekt~~nftd~~s~kylf~e~i~~~d~~i~ikkvn~fsehn 79 (812)
T COG3421 3 EMATGSGKTLVMAGLILECYK---KGYRNFLFFVNQANILEKTKLNFTDSVSSKYLFSENININDENIEIKKVNNFSEHN 79 (812)
T ss_pred ccccCCChhhHHHHHHHHHHH---hchhhEEEEecchhHHHHHHhhcccchhhhHhhhhhhhcCCceeeeeeecccCccC
Confidence 468999999887777776542 2333334443333332211100 000 0 01111 1 11111 1111112234
Q ss_pred CCcEEEEEccHHHHHHHhcCC-------CCCCccEE-EEeCCCcCCCcch-------------HHHHHHHHHcccCCCCc
Q 001817 390 RDTRLMFCTTGILLRRLLVDR-------SLRGVTHV-IVDEIHERGMNED-------------FLLIVLKELLPRRPELR 448 (1009)
Q Consensus 390 ~~t~Iiv~T~g~Ll~~L~~~~-------~l~~is~I-IIDEaHeR~~~~d-------------~ll~llk~ll~~~~~lk 448 (1009)
....|.|+|.+.|...+.+.. .+.+..+| +-||+|+ +++. -+...+...+..+++--
T Consensus 80 d~iei~fttiq~l~~d~~~~ken~itledl~~~klvfl~deahh--ln~~tkkk~~de~~~~~~we~~v~la~~~nkd~~ 157 (812)
T COG3421 80 DAIEIYFTTIQGLFSDFTRAKENAITLEDLKDQKLVFLADEAHH--LNTETKKKLNDEASEKRNWESVVKLALEQNKDNL 157 (812)
T ss_pred CceEEEEeehHHHHHHHHhhccccccHhhHhhCceEEEechhhh--hhhhhhhhcccHHHHHhhHHHHHHHHHhcCCCce
Confidence 567899999998877665433 35555554 5699996 2222 12223344445667777
Q ss_pred EEEeccCCC
Q 001817 449 LILMSATLN 457 (1009)
Q Consensus 449 vIlmSATl~ 457 (1009)
++..|||++
T Consensus 158 ~lef~at~~ 166 (812)
T COG3421 158 LLEFSATIP 166 (812)
T ss_pred eehhhhcCC
Confidence 888999985
No 289
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=94.28 E-value=0.14 Score=60.01 Aligned_cols=32 Identities=22% Similarity=0.420 Sum_probs=26.2
Q ss_pred HHHHHHHHHcCCeEEEEecCCCchhhhHHHHH
Q 001817 303 RDALLKAISENQVVVVSGETGCGKTTQLPQYI 334 (1009)
Q Consensus 303 q~~il~~l~~~~~vII~apTGSGKTt~~~~~i 334 (1009)
.+.++.++..++++++.||+|+|||+.+-...
T Consensus 184 le~l~~~L~~~~~iil~GppGtGKT~lA~~la 215 (459)
T PRK11331 184 IETILKRLTIKKNIILQGPPGVGKTFVARRLA 215 (459)
T ss_pred HHHHHHHHhcCCCEEEECCCCCCHHHHHHHHH
Confidence 36677778889999999999999998775433
No 290
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=94.27 E-value=0.12 Score=63.05 Aligned_cols=39 Identities=21% Similarity=0.221 Sum_probs=26.6
Q ss_pred HHHHHhcCCCCCCccEEEEeCCCcCCCcchHHHHHHHHHcc
Q 001817 402 LLRRLLVDRSLRGVTHVIVDEIHERGMNEDFLLIVLKELLP 442 (1009)
Q Consensus 402 Ll~~L~~~~~l~~is~IIIDEaHeR~~~~d~ll~llk~ll~ 442 (1009)
+...+...|....+.++||||+|. +..+-.-.+++.+-.
T Consensus 107 i~~~v~~~p~~~~~kViIIDE~~~--Lt~~a~naLLKtLEe 145 (559)
T PRK05563 107 IRDKVKYAPSEAKYKVYIIDEVHM--LSTGAFNALLKTLEE 145 (559)
T ss_pred HHHHHhhCcccCCeEEEEEECccc--CCHHHHHHHHHHhcC
Confidence 344444456778899999999996 555556666665543
No 291
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=94.26 E-value=0.23 Score=54.68 Aligned_cols=22 Identities=27% Similarity=0.268 Sum_probs=17.7
Q ss_pred CCeEEEEecCCCchhhhHHHHH
Q 001817 313 NQVVVVSGETGCGKTTQLPQYI 334 (1009)
Q Consensus 313 ~~~vII~apTGSGKTt~~~~~i 334 (1009)
..++++.||+|||||+.+-.+.
T Consensus 42 ~~~vll~GppGtGKTtlA~~ia 63 (261)
T TIGR02881 42 VLHMIFKGNPGTGKTTVARILG 63 (261)
T ss_pred cceEEEEcCCCCCHHHHHHHHH
Confidence 4578999999999998775543
No 292
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair]
Probab=94.20 E-value=0.083 Score=65.44 Aligned_cols=118 Identities=20% Similarity=0.213 Sum_probs=72.6
Q ss_pred HHHHHHHHHHHHcCCeEEEEecCCCchhhhHHHHHHHHHHHHhcCCceEEEechhHHHHHHHHHHHHHHHhCC--cccce
Q 001817 300 YKERDALLKAISENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERGE--KLGES 377 (1009)
Q Consensus 300 ~~~q~~il~~l~~~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~IvvtqPrR~La~qva~rva~e~~~--~~g~~ 377 (1009)
..|++++..++....-.+|.|=+|+||||.+...+-- +.. .+.+|+.+.=|-.++..+--++....-. .+|..
T Consensus 672 ~dQr~A~~k~L~aedy~LI~GMPGTGKTTtI~~LIki-L~~----~gkkVLLtsyThsAVDNILiKL~~~~i~~lRLG~~ 746 (1100)
T KOG1805|consen 672 NDQRQALLKALAAEDYALILGMPGTGKTTTISLLIKI-LVA----LGKKVLLTSYTHSAVDNILIKLKGFGIYILRLGSE 746 (1100)
T ss_pred HHHHHHHHHHHhccchheeecCCCCCchhhHHHHHHH-HHH----cCCeEEEEehhhHHHHHHHHHHhccCcceeecCCc
Confidence 3578999999999999999999999999887765533 222 3457888888888888876666432110 11111
Q ss_pred ee-------ee-eeecc--------ccCCCcEEEEEccHHHHHHHhcCCCCCCccEEEEeCCCc
Q 001817 378 VG-------YK-VRLEG--------MKGRDTRLMFCTTGILLRRLLVDRSLRGVTHVIVDEIHE 425 (1009)
Q Consensus 378 vG-------y~-vr~e~--------~~~~~t~Iiv~T~g~Ll~~L~~~~~l~~is~IIIDEaHe 425 (1009)
-- +. ....+ ..-..+.|+.||-=-+-.-+. ..+.+++.|||||-.
T Consensus 747 ~kih~~v~e~~~~~~~s~ks~~~l~~~~~~~~IVa~TClgi~~plf---~~R~FD~cIiDEASQ 807 (1100)
T KOG1805|consen 747 EKIHPDVEEFTLTNETSEKSYADLKKFLDQTSIVACTCLGINHPLF---VNRQFDYCIIDEASQ 807 (1100)
T ss_pred cccchHHHHHhcccccchhhHHHHHHHhCCCcEEEEEccCCCchhh---hccccCEEEEccccc
Confidence 00 00 00000 111456788777421111111 346789999999985
No 293
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=94.20 E-value=0.3 Score=67.69 Aligned_cols=137 Identities=14% Similarity=0.187 Sum_probs=76.6
Q ss_pred CCCHHHHHHHHHHHHc--CCeEEEEecCCCchhhhHHHHHHHHHHHHhcCCceEEEechhHHHHHHHHHHHHHHHhCCcc
Q 001817 297 LPSYKERDALLKAISE--NQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERGEKL 374 (1009)
Q Consensus 297 LPi~~~q~~il~~l~~--~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~IvvtqPrR~La~qva~rva~e~~~~~ 374 (1009)
++....|.+.+..+.. +++.+|.|+.|+||||.+- .+.+.+ + ..+..|+.++|+--+|..+.+.. |..-
T Consensus 428 ~~Ls~~Q~~Av~~il~s~~~v~ii~G~aGTGKTt~l~-~l~~~~-~---~~G~~V~~lAPTgrAA~~L~e~~----g~~A 498 (1960)
T TIGR02760 428 FALSPSNKDAVSTLFTSTKRFIIINGFGGTGSTEIAQ-LLLHLA-S---EQGYEIQIITAGSLSAQELRQKI----PRLA 498 (1960)
T ss_pred CCCCHHHHHHHHHHHhCCCCeEEEEECCCCCHHHHHH-HHHHHH-H---hcCCeEEEEeCCHHHHHHHHHHh----cchh
Confidence 4444444455554444 5899999999999996654 333332 2 12457888889988877766543 2110
Q ss_pred cceeeeeeeeccccCCCcEEEEEccHHHHHHHhcCCCCCCccEEEEeCCCcCCCcchHHHHHHHHHcccCCCCcEEEecc
Q 001817 375 GESVGYKVRLEGMKGRDTRLMFCTTGILLRRLLVDRSLRGVTHVIVDEIHERGMNEDFLLIVLKELLPRRPELRLILMSA 454 (1009)
Q Consensus 375 g~~vGy~vr~e~~~~~~t~Iiv~T~g~Ll~~L~~~~~l~~is~IIIDEaHeR~~~~d~ll~llk~ll~~~~~lkvIlmSA 454 (1009)
.....+- ...... ....|...++ ..+..+..-++|||||+-. +.+..+..+++.... .+.|+|++-=
T Consensus 499 ~Ti~~~l---~~l~~~---~~~~tv~~fl---~~~~~l~~~~vlIVDEAsM--l~~~~~~~Ll~~a~~--~garvVlvGD 565 (1960)
T TIGR02760 499 STFITWV---KNLFND---DQDHTVQGLL---DKSSPFSNKDIFVVDEANK--LSNNELLKLIDKAEQ--HNSKLILLND 565 (1960)
T ss_pred hhHHHHH---Hhhccc---ccchhHHHhh---cccCCCCCCCEEEEECCCC--CCHHHHHHHHHHHhh--cCCEEEEEcC
Confidence 0000000 000000 0112222232 1223456779999999996 777777777765433 4678888765
Q ss_pred C
Q 001817 455 T 455 (1009)
Q Consensus 455 T 455 (1009)
+
T Consensus 566 ~ 566 (1960)
T TIGR02760 566 S 566 (1960)
T ss_pred h
Confidence 4
No 294
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=94.19 E-value=0.046 Score=52.71 Aligned_cols=18 Identities=33% Similarity=0.551 Sum_probs=14.3
Q ss_pred EEEEecCCCchhhhHHHH
Q 001817 316 VVVSGETGCGKTTQLPQY 333 (1009)
Q Consensus 316 vII~apTGSGKTt~~~~~ 333 (1009)
+++.||.|+|||+.+-..
T Consensus 1 ill~G~~G~GKT~l~~~l 18 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARAL 18 (132)
T ss_dssp EEEESSTTSSHHHHHHHH
T ss_pred CEEECcCCCCeeHHHHHH
Confidence 588999999999665443
No 295
>PRK06921 hypothetical protein; Provisional
Probab=94.14 E-value=0.28 Score=54.21 Aligned_cols=27 Identities=22% Similarity=0.334 Sum_probs=19.8
Q ss_pred cCCeEEEEecCCCchhhhHHHHHHHHHH
Q 001817 312 ENQVVVVSGETGCGKTTQLPQYILESET 339 (1009)
Q Consensus 312 ~~~~vII~apTGSGKTt~~~~~ile~~~ 339 (1009)
.+..+++.|+||+|||..+. .+...+.
T Consensus 116 ~~~~l~l~G~~G~GKThLa~-aia~~l~ 142 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLT-AAANELM 142 (266)
T ss_pred CCCeEEEECCCCCcHHHHHH-HHHHHHh
Confidence 46789999999999996654 4444443
No 296
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Probab=94.12 E-value=0.27 Score=58.88 Aligned_cols=114 Identities=22% Similarity=0.215 Sum_probs=91.1
Q ss_pred CCCcEEEEcCCHhHHHHHHHHHHcCCCCCCCCCeEEEEecCCCCHHHHHhhcCCCCCCceE-EEEecCccccccCCCCee
Q 001817 576 RPGAVLVFMTGWDDINSLKDQLQAHPLLGDPSRVLLLACHGSMASSEQRLIFDKPEDGVRK-IVLATNMAETSITINDVV 654 (1009)
Q Consensus 576 ~~g~iLVFl~~~~~i~~l~~~L~~~~~~~~~~~~~v~~lHs~l~~~er~~v~~~f~~G~~k-VLVATniae~GIdIp~V~ 654 (1009)
.+.++|+|..-.+.+.-+.++|.-. ++.-+-+.|+....+|+.+...|....+- .|++|-....|||+...+
T Consensus 1043 egHRvL~yfQMTkM~dl~EdYl~yr-------~Y~ylRLDGSsk~~dRrd~vrDwQ~sdiFvFLLSTRAGGLGINLTAAD 1115 (1185)
T KOG0388|consen 1043 EGHRVLMYFQMTKMIDLIEDYLVYR-------GYTYLRLDGSSKASDRRDVVRDWQASDIFVFLLSTRAGGLGINLTAAD 1115 (1185)
T ss_pred CCceEEehhHHHHHHHHHHHHHHhh-------ccceEEecCcchhhHHHHHHhhccCCceEEEEEecccCcccccccccc
Confidence 3568999998888888888888765 67788899999999999999999876654 478999999999999999
Q ss_pred EEEeCCCCccccccCCCCCCcccccccCHHhHHhhhcccCCCCCCcEEEecchhhhh
Q 001817 655 FVIDCGKAKETSYDALNNTPCLLPSWISKAAARQRRGRAGRVQPGECYHLYPRYVYD 711 (1009)
Q Consensus 655 ~VId~g~~k~~~yd~~~~~~~l~~~~iS~as~~QR~GRAGR~~~G~c~~Lys~~~~~ 711 (1009)
.||- ||+..+... -.++.-|+-|-|.++.-.+|+|+++...+
T Consensus 1116 TViF--------YdSDWNPT~-------D~QAMDRAHRLGQTrdvtvyrl~~rgTvE 1157 (1185)
T KOG0388|consen 1116 TVIF--------YDSDWNPTA-------DQQAMDRAHRLGQTRDVTVYRLITRGTVE 1157 (1185)
T ss_pred eEEE--------ecCCCCcch-------hhHHHHHHHhccCccceeeeeecccccHH
Confidence 9997 666655432 23556677777777778899999987654
No 297
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=94.11 E-value=0.072 Score=67.18 Aligned_cols=116 Identities=17% Similarity=0.099 Sum_probs=67.2
Q ss_pred HHHHHHHcCCeEEEEecCCCchhhhHHHHHHHHHHHHhcCCceEEEechhHHHHHHHHHH---HHHHHhCCcccceeeee
Q 001817 305 ALLKAISENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSE---RVAAERGEKLGESVGYK 381 (1009)
Q Consensus 305 ~il~~l~~~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~IvvtqPrR~La~qva~---rva~e~~~~~g~~vGy~ 381 (1009)
+++-.+.-++--|....||=|||+++.++++-..+ .|.++.| ||+. --||.-=++ .+...+|..+|......
T Consensus 174 QliGgivLh~G~IAEM~TGEGKTLvAtlp~yLnAL---~GkgVHv-VTVN-DYLA~RDaewmgply~fLGLsvg~i~~~~ 248 (1112)
T PRK12901 174 QLIGGVVLHQGKIAEMATGEGKTLVATLPVYLNAL---TGNGVHV-VTVN-DYLAKRDSEWMGPLYEFHGLSVDCIDKHQ 248 (1112)
T ss_pred HHhhhhhhcCCceeeecCCCCchhHHHHHHHHHHH---cCCCcEE-EEec-hhhhhccHHHHHHHHHHhCCceeecCCCC
Confidence 35666666666788999999999999888876555 3444444 4433 233322222 33334454444322211
Q ss_pred -eeeccccCCCcEEEEEccHHH-----HHHHhcCC---CCCCccEEEEeCCCc
Q 001817 382 -VRLEGMKGRDTRLMFCTTGIL-----LRRLLVDR---SLRGVTHVIVDEIHE 425 (1009)
Q Consensus 382 -vr~e~~~~~~t~Iiv~T~g~L-----l~~L~~~~---~l~~is~IIIDEaHe 425 (1009)
...+....-.++|+|+|..-+ -+.+..++ ....+.+.|||||+.
T Consensus 249 ~~~~~rr~aY~~DItYgTn~EfGFDYLRDnm~~~~~~~vqR~~~fAIVDEvDS 301 (1112)
T PRK12901 249 PNSEARRKAYNADITYGTNNEFGFDYLRDNMAHSPEDLVQRKHNYAIVDEVDS 301 (1112)
T ss_pred CCHHHHHHhCCCcceecCCCccccccchhccccchHhhhCcCCceeEeechhh
Confidence 111223335689999998543 23332222 456788999999994
No 298
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=94.10 E-value=0.099 Score=63.47 Aligned_cols=50 Identities=16% Similarity=0.157 Sum_probs=28.7
Q ss_pred HHHHHhcCCCCCCccEEEEeCCCcCCCcchHHHHHHHHHcccCCCCcEEEec
Q 001817 402 LLRRLLVDRSLRGVTHVIVDEIHERGMNEDFLLIVLKELLPRRPELRLILMS 453 (1009)
Q Consensus 402 Ll~~L~~~~~l~~is~IIIDEaHeR~~~~d~ll~llk~ll~~~~~lkvIlmS 453 (1009)
+...+...|...+..++||||||. +..+-.-.+++.+-.-.+...+|+++
T Consensus 107 Ii~~~~~~P~~~~~KVIIIDEad~--Lt~~A~NaLLKtLEEPp~~tvfIL~T 156 (605)
T PRK05896 107 IIDNINYLPTTFKYKVYIIDEAHM--LSTSAWNALLKTLEEPPKHVVFIFAT 156 (605)
T ss_pred HHHHHHhchhhCCcEEEEEechHh--CCHHHHHHHHHHHHhCCCcEEEEEEC
Confidence 334444455667789999999996 44444444555443333344455544
No 299
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=94.09 E-value=0.19 Score=53.90 Aligned_cols=104 Identities=19% Similarity=0.233 Sum_probs=55.3
Q ss_pred CeEEEEecCCCchhhhHHHHHHHHHHHHhcCCceEEEechhHHHHHHHHHHHHHHHhCCcccceeeeeeeeccccCCCcE
Q 001817 314 QVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERGEKLGESVGYKVRLEGMKGRDTR 393 (1009)
Q Consensus 314 ~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~IvvtqPrR~La~qva~rva~e~~~~~g~~vGy~vr~e~~~~~~t~ 393 (1009)
+.++|.||+|+|||. ..+.+...+... ....+|+++. -..........+..
T Consensus 35 ~~l~l~G~~G~GKTH-LL~Ai~~~~~~~--~~~~~v~y~~-~~~f~~~~~~~~~~------------------------- 85 (219)
T PF00308_consen 35 NPLFLYGPSGLGKTH-LLQAIANEAQKQ--HPGKRVVYLS-AEEFIREFADALRD------------------------- 85 (219)
T ss_dssp SEEEEEESTTSSHHH-HHHHHHHHHHHH--CTTS-EEEEE-HHHHHHHHHHHHHT-------------------------
T ss_pred CceEEECCCCCCHHH-HHHHHHHHHHhc--cccccceeec-HHHHHHHHHHHHHc-------------------------
Confidence 358999999999996 455665555432 2345677753 22333333333311
Q ss_pred EEEEccHHHHHHHhcCCCCCCccEEEEeCCCcCCCc---chHHHHHHHHHcccCCCCcEEEeccCCC
Q 001817 394 LMFCTTGILLRRLLVDRSLRGVTHVIVDEIHERGMN---EDFLLIVLKELLPRRPELRLILMSATLN 457 (1009)
Q Consensus 394 Iiv~T~g~Ll~~L~~~~~l~~is~IIIDEaHeR~~~---~d~ll~llk~ll~~~~~lkvIlmSATl~ 457 (1009)
.....+.+. +..+++++||++|.-.-. .+.+..++..+... +-++|+.|...+
T Consensus 86 ---~~~~~~~~~------~~~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~--~k~li~ts~~~P 141 (219)
T PF00308_consen 86 ---GEIEEFKDR------LRSADLLIIDDIQFLAGKQRTQEELFHLFNRLIES--GKQLILTSDRPP 141 (219)
T ss_dssp ---TSHHHHHHH------HCTSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHT--TSEEEEEESS-T
T ss_pred ---ccchhhhhh------hhcCCEEEEecchhhcCchHHHHHHHHHHHHHHhh--CCeEEEEeCCCC
Confidence 001223332 457899999999963222 23444444444433 335666665543
No 300
>PRK08939 primosomal protein DnaI; Reviewed
Probab=94.06 E-value=0.53 Score=53.08 Aligned_cols=113 Identities=13% Similarity=0.228 Sum_probs=58.9
Q ss_pred cCCeEEEEecCCCchhhhHHHHHHHHHHHHhcCCceEEEechhHHHHHHHHHHHHHHHhCCcccceeeeeeeeccccCCC
Q 001817 312 ENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERGEKLGESVGYKVRLEGMKGRD 391 (1009)
Q Consensus 312 ~~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~IvvtqPrR~La~qva~rva~e~~~~~g~~vGy~vr~e~~~~~~ 391 (1009)
.++.+++.|++|+|||..+....- .+.. .|..+ .++..| .++..+...+ +. +
T Consensus 155 ~~~gl~L~G~~G~GKThLa~Aia~-~l~~--~g~~v-~~~~~~--~l~~~lk~~~----~~------------------~ 206 (306)
T PRK08939 155 KVKGLYLYGDFGVGKSYLLAAIAN-ELAK--KGVSS-TLLHFP--EFIRELKNSI----SD------------------G 206 (306)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHH-HHHH--cCCCE-EEEEHH--HHHHHHHHHH----hc------------------C
Confidence 456899999999999966654443 3332 33333 334345 2333332221 10 0
Q ss_pred cEEEEEccHHHHHHHhcCCCCCCccEEEEeCCCcCCCcchHHH-HHHHHHcccC-CCCcEEEeccCCCHHHHHhhh
Q 001817 392 TRLMFCTTGILLRRLLVDRSLRGVTHVIVDEIHERGMNEDFLL-IVLKELLPRR-PELRLILMSATLNAELFSSYF 465 (1009)
Q Consensus 392 t~Iiv~T~g~Ll~~L~~~~~l~~is~IIIDEaHeR~~~~d~ll-~llk~ll~~~-~~lkvIlmSATl~~~~~~~yf 465 (1009)
+...+++ .+.+++++||||+.--.+ +++.. .++..++..| .+-+-.++|.-++.+.+.+.|
T Consensus 207 ------~~~~~l~------~l~~~dlLiIDDiG~e~~-s~~~~~~ll~~Il~~R~~~~~~ti~TSNl~~~el~~~~ 269 (306)
T PRK08939 207 ------SVKEKID------AVKEAPVLMLDDIGAEQM-SSWVRDEVLGVILQYRMQEELPTFFTSNFDFDELEHHL 269 (306)
T ss_pred ------cHHHHHH------HhcCCCEEEEecCCCccc-cHHHHHHHHHHHHHHHHHCCCeEEEECCCCHHHHHHHH
Confidence 1122233 256889999999984322 33222 3444443322 122345556666777676666
No 301
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=94.04 E-value=0.15 Score=58.82 Aligned_cols=28 Identities=29% Similarity=0.566 Sum_probs=21.8
Q ss_pred eEEEEecCCCchhhhHHHHHHHHHHHHhc
Q 001817 315 VVVVSGETGCGKTTQLPQYILESETEAAR 343 (1009)
Q Consensus 315 ~vII~apTGSGKTt~~~~~ile~~~~~~~ 343 (1009)
+++|.|+||+||| +...++.+.+.....
T Consensus 44 n~~iyG~~GTGKT-~~~~~v~~~l~~~~~ 71 (366)
T COG1474 44 NIIIYGPTGTGKT-ATVKFVMEELEESSA 71 (366)
T ss_pred cEEEECCCCCCHh-HHHHHHHHHHHhhhc
Confidence 5899999999999 666777777765433
No 302
>PHA02533 17 large terminase protein; Provisional
Probab=93.93 E-value=0.99 Score=54.77 Aligned_cols=156 Identities=13% Similarity=0.115 Sum_probs=91.2
Q ss_pred CCCCHHHHHHHHHHHHcCCeEEEEecCCCchhhhHHHHHHHHHHHHhcCCceEEEechhHHHHHHHHHHHHHHHhCCccc
Q 001817 296 SLPSYKERDALLKAISENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERGEKLG 375 (1009)
Q Consensus 296 ~LPi~~~q~~il~~l~~~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~IvvtqPrR~La~qva~rva~e~~~~~g 375 (1009)
.++....|..++..+..++-.++..+=..|||+.+..+++..+.. ..+..+++++|++..|..+.+++.........
T Consensus 57 Pf~L~p~Q~~i~~~~~~~R~~ii~~aRq~GKStl~a~~al~~a~~---~~~~~v~i~A~~~~QA~~vF~~ik~~ie~~P~ 133 (534)
T PHA02533 57 KVQMRDYQKDMLKIMHKNRFNACNLSRQLGKTTVVAIFLLHYVCF---NKDKNVGILAHKASMAAEVLDRTKQAIELLPD 133 (534)
T ss_pred ecCCcHHHHHHHHHHhcCeEEEEEEcCcCChHHHHHHHHHHHHHh---CCCCEEEEEeCCHHHHHHHHHHHHHHHHhCHH
Confidence 467788899999988777777889999999999888666554443 23458999999999999998888654321100
Q ss_pred -ceeee------eeeeccccCCCcEEEEEccHHHHHHHhcCCCCCCccEEEEeCCCcCCCcchHHHHHHHHHcccCCCCc
Q 001817 376 -ESVGY------KVRLEGMKGRDTRLMFCTTGILLRRLLVDRSLRGVTHVIVDEIHERGMNEDFLLIVLKELLPRRPELR 448 (1009)
Q Consensus 376 -~~vGy------~vr~e~~~~~~t~Iiv~T~g~Ll~~L~~~~~l~~is~IIIDEaHeR~~~~d~ll~llk~ll~~~~~lk 448 (1009)
...+. .+.+ ..+..|.+.|.+- +.. .-.+.+++|+||+|...-..+++..+. ..+......+
T Consensus 134 l~~~~i~~~~~~~I~l----~NGS~I~~lss~~--~t~----rG~~~~~liiDE~a~~~~~~e~~~ai~-p~lasg~~~r 202 (534)
T PHA02533 134 FLQPGIVEWNKGSIEL----ENGSKIGAYASSP--DAV----RGNSFAMIYIDECAFIPNFIDFWLAIQ-PVISSGRSSK 202 (534)
T ss_pred HhhcceeecCccEEEe----CCCCEEEEEeCCC--Ccc----CCCCCceEEEeccccCCCHHHHHHHHH-HHHHcCCCce
Confidence 00110 1111 2345565555321 100 122456799999996322223443332 2233333345
Q ss_pred EEEeccCCCHHHHHhhh
Q 001817 449 LILMSATLNAELFSSYF 465 (1009)
Q Consensus 449 vIlmSATl~~~~~~~yf 465 (1009)
++..|..-..+.|.+.+
T Consensus 203 ~iiiSTp~G~n~fye~~ 219 (534)
T PHA02533 203 IIITSTPNGLNHFYDIW 219 (534)
T ss_pred EEEEECCCchhhHHHHH
Confidence 66666665334354443
No 303
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.92 E-value=0.13 Score=63.29 Aligned_cols=48 Identities=21% Similarity=0.276 Sum_probs=28.5
Q ss_pred HHHHHhcCCCCCCccEEEEeCCCcCCCcchHHHHHHHHHcccCCCCcEEE
Q 001817 402 LLRRLLVDRSLRGVTHVIVDEIHERGMNEDFLLIVLKELLPRRPELRLIL 451 (1009)
Q Consensus 402 Ll~~L~~~~~l~~is~IIIDEaHeR~~~~d~ll~llk~ll~~~~~lkvIl 451 (1009)
++..+...+......+|||||||. +..+..-.+++.+-.-.....+|+
T Consensus 109 ii~~a~~~p~~~~~KViIIDEad~--Lt~~a~naLLK~LEePp~~tvfIL 156 (620)
T PRK14948 109 LIERAQFAPVQARWKVYVIDECHM--LSTAAFNALLKTLEEPPPRVVFVL 156 (620)
T ss_pred HHHHHhhChhcCCceEEEEECccc--cCHHHHHHHHHHHhcCCcCeEEEE
Confidence 334444445667889999999996 555555555655543223333343
No 304
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=93.91 E-value=0.45 Score=48.68 Aligned_cols=124 Identities=21% Similarity=0.287 Sum_probs=58.9
Q ss_pred eEEEEecCCCchhhhHHHHHHHHHHHHhcCCceEEEechhHHHHHHHHHHHHHHHhCCcccceeeeeeeeccccCCCcEE
Q 001817 315 VVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERGEKLGESVGYKVRLEGMKGRDTRL 394 (1009)
Q Consensus 315 ~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~IvvtqPrR~La~qva~rva~e~~~~~g~~vGy~vr~e~~~~~~t~I 394 (1009)
++++.|++|+||||.+..+..... . .+....++-.-+.|..+...........+ ..+..... .
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~-~--~g~~v~~i~~D~~~~~~~~~l~~~~~~~~--------~~~~~~~~--~---- 64 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLK-K--KGKKVLLVAADTYRPAAIEQLRVLGEQVG--------VPVFEEGE--G---- 64 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH-H--CCCcEEEEEcCCCChHHHHHHHHhcccCC--------eEEEecCC--C----
Confidence 578899999999988766554322 1 23333334344555433332222222211 11111000 0
Q ss_pred EEEccHHHHHHHhcCCCCCCccEEEEeCCCcCCCcchHHHHHHHHHcc-cCCCCcEEEeccCCCH
Q 001817 395 MFCTTGILLRRLLVDRSLRGVTHVIVDEIHERGMNEDFLLIVLKELLP-RRPELRLILMSATLNA 458 (1009)
Q Consensus 395 iv~T~g~Ll~~L~~~~~l~~is~IIIDEaHeR~~~~d~ll~llk~ll~-~~~~lkvIlmSATl~~ 458 (1009)
..+..++........-.++++||+|.......+.+. +..+..+.. ..++--++.++|+...
T Consensus 65 --~~~~~~~~~~~~~~~~~~~d~viiDt~g~~~~~~~~-l~~l~~l~~~~~~~~~~lVv~~~~~~ 126 (173)
T cd03115 65 --KDPVSIAKRAIEHAREENFDVVIVDTAGRLQIDENL-MEELKKIKRVVKPDEVLLVVDAMTGQ 126 (173)
T ss_pred --CCHHHHHHHHHHHHHhCCCCEEEEECcccchhhHHH-HHHHHHHHhhcCCCeEEEEEECCCCh
Confidence 012222211111112347789999999853333333 333344433 2355567778886543
No 305
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=93.90 E-value=0.22 Score=49.61 Aligned_cols=23 Identities=43% Similarity=0.541 Sum_probs=18.7
Q ss_pred eEEEEecCCCchhhhHHHHHHHH
Q 001817 315 VVVVSGETGCGKTTQLPQYILES 337 (1009)
Q Consensus 315 ~vII~apTGSGKTt~~~~~ile~ 337 (1009)
.++|.|++|+|||+.+..++...
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~ 23 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNI 23 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHH
Confidence 36889999999998887776654
No 306
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=93.77 E-value=0.091 Score=59.75 Aligned_cols=51 Identities=24% Similarity=0.300 Sum_probs=33.2
Q ss_pred HHHHHhcCCCCCCccEEEEeCCCcCCCcchHHHHHHHHHcccCCCCcEEEecc
Q 001817 402 LLRRLLVDRSLRGVTHVIVDEIHERGMNEDFLLIVLKELLPRRPELRLILMSA 454 (1009)
Q Consensus 402 Ll~~L~~~~~l~~is~IIIDEaHeR~~~~d~ll~llk~ll~~~~~lkvIlmSA 454 (1009)
+.+.+...+.....+++||||+|. ++.+-.-.++|.+-.-.++..+|+.|.
T Consensus 94 l~~~~~~~~~~~~~kv~iI~~a~~--m~~~aaNaLLK~LEEPp~~~~fiL~t~ 144 (328)
T PRK05707 94 LVSFVVQTAQLGGRKVVLIEPAEA--MNRNAANALLKSLEEPSGDTVLLLISH 144 (328)
T ss_pred HHHHHhhccccCCCeEEEECChhh--CCHHHHHHHHHHHhCCCCCeEEEEEEC
Confidence 344444455677899999999997 677777777776654333444444433
No 307
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.77 E-value=0.11 Score=63.84 Aligned_cols=47 Identities=26% Similarity=0.333 Sum_probs=28.6
Q ss_pred HHHhcCCCCCCccEEEEeCCCcCCCcchHHHHHHHHHcccCCCCcEEEe
Q 001817 404 RRLLVDRSLRGVTHVIVDEIHERGMNEDFLLIVLKELLPRRPELRLILM 452 (1009)
Q Consensus 404 ~~L~~~~~l~~is~IIIDEaHeR~~~~d~ll~llk~ll~~~~~lkvIlm 452 (1009)
..+...+...+..+|||||+|. +..+..-.+++.+-.-.+...+|+.
T Consensus 110 ~~~~~~p~~~~~kVvIIDEa~~--L~~~a~naLLk~LEepp~~tv~Il~ 156 (585)
T PRK14950 110 ERVQFRPALARYKVYIIDEVHM--LSTAAFNALLKTLEEPPPHAIFILA 156 (585)
T ss_pred HHHhhCcccCCeEEEEEeChHh--CCHHHHHHHHHHHhcCCCCeEEEEE
Confidence 3444455678899999999996 5555555555554433333334443
No 308
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=93.74 E-value=0.4 Score=55.05 Aligned_cols=49 Identities=22% Similarity=0.251 Sum_probs=30.0
Q ss_pred HHHHHHhcCCCCCCccEEEEeCCCcCCCcchHHHHHHHHHcccCCCCcEEE
Q 001817 401 ILLRRLLVDRSLRGVTHVIVDEIHERGMNEDFLLIVLKELLPRRPELRLIL 451 (1009)
Q Consensus 401 ~Ll~~L~~~~~l~~is~IIIDEaHeR~~~~d~ll~llk~ll~~~~~lkvIl 451 (1009)
.+.+.+...+...+..+|||||+|. +..+....+++.+-...++..+|+
T Consensus 104 ~l~~~~~~~p~~~~~~vviidea~~--l~~~~~~~Ll~~le~~~~~~~lIl 152 (355)
T TIGR02397 104 EILDNVKYAPSSGKYKVYIIDEVHM--LSKSAFNALLKTLEEPPEHVVFIL 152 (355)
T ss_pred HHHHHHhcCcccCCceEEEEeChhh--cCHHHHHHHHHHHhCCccceeEEE
Confidence 3555555566778889999999996 444445555555533223344444
No 309
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.70 E-value=0.23 Score=58.25 Aligned_cols=47 Identities=19% Similarity=0.183 Sum_probs=27.8
Q ss_pred HHHHhcCCCCCCccEEEEeCCCcCCCcchHHHHHHHHHcccCCCCcEEE
Q 001817 403 LRRLLVDRSLRGVTHVIVDEIHERGMNEDFLLIVLKELLPRRPELRLIL 451 (1009)
Q Consensus 403 l~~L~~~~~l~~is~IIIDEaHeR~~~~d~ll~llk~ll~~~~~lkvIl 451 (1009)
...+...|...+..+|||||+|. +..+-...+++.+-...+...+|+
T Consensus 116 ~~~~~~~p~~~~~kvvIIdea~~--l~~~~~~~LLk~LEep~~~t~~Il 162 (397)
T PRK14955 116 RENVRYGPQKGRYRVYIIDEVHM--LSIAAFNAFLKTLEEPPPHAIFIF 162 (397)
T ss_pred HHHHhhchhcCCeEEEEEeChhh--CCHHHHHHHHHHHhcCCCCeEEEE
Confidence 44455556788899999999996 444444444544433223333444
No 310
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=93.67 E-value=0.13 Score=63.69 Aligned_cols=51 Identities=20% Similarity=0.219 Sum_probs=31.0
Q ss_pred HHHHHHhcCCCCCCccEEEEeCCCcCCCcchHHHHHHHHHcccCCCCcEEEec
Q 001817 401 ILLRRLLVDRSLRGVTHVIVDEIHERGMNEDFLLIVLKELLPRRPELRLILMS 453 (1009)
Q Consensus 401 ~Ll~~L~~~~~l~~is~IIIDEaHeR~~~~d~ll~llk~ll~~~~~lkvIlmS 453 (1009)
.+...+...|....+.++||||||. +..+..-.+++.+-.-.+...+|+++
T Consensus 105 eLie~~~~~P~~g~~KV~IIDEa~~--LT~~A~NALLKtLEEPP~~tifILaT 155 (725)
T PRK07133 105 ELIENVKNLPTQSKYKIYIIDEVHM--LSKSAFNALLKTLEEPPKHVIFILAT 155 (725)
T ss_pred HHHHHHHhchhcCCCEEEEEEChhh--CCHHHHHHHHHHhhcCCCceEEEEEc
Confidence 3444555556778999999999996 45555555565554332333444433
No 311
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=93.62 E-value=0.35 Score=54.62 Aligned_cols=29 Identities=21% Similarity=0.310 Sum_probs=18.8
Q ss_pred HHHHHHHcC---CeEEEEecCCCchhhhHHHH
Q 001817 305 ALLKAISEN---QVVVVSGETGCGKTTQLPQY 333 (1009)
Q Consensus 305 ~il~~l~~~---~~vII~apTGSGKTt~~~~~ 333 (1009)
.+...+.++ ..+++.||+|+|||+.+-..
T Consensus 32 ~l~~~~~~~~~~~~lll~G~~G~GKT~la~~l 63 (316)
T PHA02544 32 TFKSIVKKGRIPNMLLHSPSPGTGKTTVAKAL 63 (316)
T ss_pred HHHHHHhcCCCCeEEEeeCcCCCCHHHHHHHH
Confidence 344444444 34555999999999776544
No 312
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=93.60 E-value=0.28 Score=52.21 Aligned_cols=20 Identities=30% Similarity=0.340 Sum_probs=15.9
Q ss_pred CeEEEEecCCCchhhhHHHH
Q 001817 314 QVVVVSGETGCGKTTQLPQY 333 (1009)
Q Consensus 314 ~~vII~apTGSGKTt~~~~~ 333 (1009)
..+++.||+|+||||.+-..
T Consensus 51 ~h~lf~GPPG~GKTTLA~II 70 (233)
T PF05496_consen 51 DHMLFYGPPGLGKTTLARII 70 (233)
T ss_dssp -EEEEESSTTSSHHHHHHHH
T ss_pred ceEEEECCCccchhHHHHHH
Confidence 47899999999999776443
No 313
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=93.58 E-value=0.11 Score=55.16 Aligned_cols=28 Identities=29% Similarity=0.501 Sum_probs=20.5
Q ss_pred HHHHHHHHc--CCeEEEEecCCCchhhhHH
Q 001817 304 DALLKAISE--NQVVVVSGETGCGKTTQLP 331 (1009)
Q Consensus 304 ~~il~~l~~--~~~vII~apTGSGKTt~~~ 331 (1009)
+.+.+.+.+ ++.++|.||-|+|||+.+-
T Consensus 9 ~~l~~~l~~~~~~~~~l~G~rg~GKTsLl~ 38 (234)
T PF01637_consen 9 EKLKELLESGPSQHILLYGPRGSGKTSLLK 38 (234)
T ss_dssp HHHHHCHHH--SSEEEEEESTTSSHHHHHH
T ss_pred HHHHHHHHhhcCcEEEEEcCCcCCHHHHHH
Confidence 344455554 5899999999999996543
No 314
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=93.57 E-value=0.37 Score=56.16 Aligned_cols=51 Identities=18% Similarity=0.181 Sum_probs=30.9
Q ss_pred HHHHHhcCCCCCCccEEEEeCCCcCCCcchHHHHHHHHHcccCCCCcEEEeccC
Q 001817 402 LLRRLLVDRSLRGVTHVIVDEIHERGMNEDFLLIVLKELLPRRPELRLILMSAT 455 (1009)
Q Consensus 402 Ll~~L~~~~~l~~is~IIIDEaHeR~~~~d~ll~llk~ll~~~~~lkvIlmSAT 455 (1009)
+.+.+...+...+..++||||+|. ++......+++.+- ..|+-.++++.||
T Consensus 105 l~~~~~~~p~~~~~kViiIDead~--m~~~aanaLLk~LE-ep~~~~~fIL~a~ 155 (394)
T PRK07940 105 LVTIAARRPSTGRWRIVVIEDADR--LTERAANALLKAVE-EPPPRTVWLLCAP 155 (394)
T ss_pred HHHHHHhCcccCCcEEEEEechhh--cCHHHHHHHHHHhh-cCCCCCeEEEEEC
Confidence 344444455667889999999996 55555555566543 3333345555555
No 315
>KOG1131 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 5'-3' helicase subunit RAD3 [Transcription; Replication, recombination and repair]
Probab=93.56 E-value=0.39 Score=55.87 Aligned_cols=59 Identities=20% Similarity=0.252 Sum_probs=38.1
Q ss_pred HHHHHHHHHHcCCeEEEEecCCCchhhhHHHHHHHHHHHHhcCCceEEEe--chhHHHHHH
Q 001817 302 ERDALLKAISENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIIC--TQPRRISAM 360 (1009)
Q Consensus 302 ~q~~il~~l~~~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~Ivv--tqPrR~La~ 360 (1009)
+-.++-.++..+...++..|+|+|||...+-.++..-+.........|.| |+|-.+-|.
T Consensus 24 YM~elKrsLDakGh~llEMPSGTGKTvsLLSli~aYq~~~p~~~~KliYCSRTvpEieK~l 84 (755)
T KOG1131|consen 24 YMRELKRSLDAKGHCLLEMPSGTGKTVSLLSLIIAYQLHYPDEHRKLIYCSRTVPEIEKAL 84 (755)
T ss_pred HHHHHHHhhccCCcEEEECCCCCCcchHHHHHHHHHHHhCCcccceEEEecCcchHHHHHH
Confidence 44566777888899999999999999766655554433333333455666 345444443
No 316
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=93.55 E-value=0.1 Score=61.78 Aligned_cols=67 Identities=22% Similarity=0.301 Sum_probs=46.1
Q ss_pred CHHHHHHHHHHHHcCCeEEEEecCCCchhhhHHHHHHHHHHHHhcC-CceEEEechhHHHHHHHHHHHH
Q 001817 299 SYKERDALLKAISENQVVVVSGETGCGKTTQLPQYILESETEAARG-AACSIICTQPRRISAMAVSERV 366 (1009)
Q Consensus 299 i~~~q~~il~~l~~~~~vII~apTGSGKTt~~~~~ile~~~~~~~~-~~~~IvvtqPrR~La~qva~rv 366 (1009)
+.+-|.+|+. -..|..+||+|..||||||+++.=+.-.+...... ...-|+++.|.+....-++..+
T Consensus 213 IQkEQneIIR-~ek~~ilVVQGaAGSGKTtiALHRvAyLlY~~R~~l~~k~vlvl~PN~vFleYis~VL 280 (747)
T COG3973 213 IQKEQNEIIR-FEKNKILVVQGAAGSGKTTIALHRVAYLLYGYRGPLQAKPVLVLGPNRVFLEYISRVL 280 (747)
T ss_pred hhHhHHHHHh-ccCCCeEEEecCCCCCchhHHHHHHHHHHhccccccccCceEEEcCcHHHHHHHHHhc
Confidence 3345777777 35789999999999999999987555444332111 1223888889999887766544
No 317
>CHL00181 cbbX CbbX; Provisional
Probab=93.52 E-value=0.21 Score=55.86 Aligned_cols=23 Identities=26% Similarity=0.267 Sum_probs=18.4
Q ss_pred CCeEEEEecCCCchhhhHHHHHH
Q 001817 313 NQVVVVSGETGCGKTTQLPQYIL 335 (1009)
Q Consensus 313 ~~~vII~apTGSGKTt~~~~~il 335 (1009)
+.++++.||+|+|||+.+-...-
T Consensus 59 ~~~ill~G~pGtGKT~lAr~la~ 81 (287)
T CHL00181 59 GLHMSFTGSPGTGKTTVALKMAD 81 (287)
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 45689999999999987765543
No 318
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=93.51 E-value=0.84 Score=54.22 Aligned_cols=37 Identities=22% Similarity=0.261 Sum_probs=24.0
Q ss_pred CeEEEEecCCCchhhhHHHHHHHHHHHHhcCCceEEEech
Q 001817 314 QVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQ 353 (1009)
Q Consensus 314 ~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~Ivvtq 353 (1009)
+.+++.||+|+|||..+ +.+...+.. ......++++.
T Consensus 131 n~l~lyG~~G~GKTHLl-~ai~~~l~~--~~~~~~v~yi~ 167 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLL-QSIGNYVVQ--NEPDLRVMYIT 167 (440)
T ss_pred CeEEEEcCCCCcHHHHH-HHHHHHHHH--hCCCCeEEEEE
Confidence 45899999999999555 444444433 22345677754
No 319
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=93.49 E-value=0.61 Score=52.52 Aligned_cols=19 Identities=32% Similarity=0.457 Sum_probs=15.8
Q ss_pred eEEEEecCCCchhhhHHHH
Q 001817 315 VVVVSGETGCGKTTQLPQY 333 (1009)
Q Consensus 315 ~vII~apTGSGKTt~~~~~ 333 (1009)
.+++.||+|+|||+.+-.+
T Consensus 40 ~~ll~G~~G~GKt~~~~~l 58 (319)
T PRK00440 40 HLLFAGPPGTGKTTAALAL 58 (319)
T ss_pred eEEEECCCCCCHHHHHHHH
Confidence 5899999999999776544
No 320
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=93.48 E-value=0.17 Score=56.51 Aligned_cols=22 Identities=27% Similarity=0.351 Sum_probs=17.7
Q ss_pred CCeEEEEecCCCchhhhHHHHH
Q 001817 313 NQVVVVSGETGCGKTTQLPQYI 334 (1009)
Q Consensus 313 ~~~vII~apTGSGKTt~~~~~i 334 (1009)
+..+++.||+|||||+.+-.+.
T Consensus 58 ~~~vll~G~pGTGKT~lA~~ia 79 (284)
T TIGR02880 58 TLHMSFTGNPGTGKTTVALRMA 79 (284)
T ss_pred CceEEEEcCCCCCHHHHHHHHH
Confidence 4579999999999998775443
No 321
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.45 E-value=0.41 Score=57.42 Aligned_cols=49 Identities=22% Similarity=0.216 Sum_probs=29.4
Q ss_pred HHHHHHhcCCCCCCccEEEEeCCCcCCCcchHHHHHHHHHcccCCCCcEEE
Q 001817 401 ILLRRLLVDRSLRGVTHVIVDEIHERGMNEDFLLIVLKELLPRRPELRLIL 451 (1009)
Q Consensus 401 ~Ll~~L~~~~~l~~is~IIIDEaHeR~~~~d~ll~llk~ll~~~~~lkvIl 451 (1009)
.+.+.+...|......++||||||. +..+....+++.+-...+...+|+
T Consensus 106 ~I~~~~~~~P~~~~~KVvIIDEad~--Lt~~a~naLLk~LEepp~~~v~Il 154 (486)
T PRK14953 106 ALRDAVSYTPIKGKYKVYIIDEAHM--LTKEAFNALLKTLEEPPPRTIFIL 154 (486)
T ss_pred HHHHHHHhCcccCCeeEEEEEChhh--cCHHHHHHHHHHHhcCCCCeEEEE
Confidence 3444455556778899999999996 444444455555543333433343
No 322
>TIGR01547 phage_term_2 phage terminase, large subunit, PBSX family. This model detects members of a highly divergent family of the large subunit of phage terminase. All members are encoded by phage genomes or within prophage regions of bacterial genomes. This is a distinct family from pfam03354.
Probab=93.44 E-value=0.37 Score=56.43 Aligned_cols=134 Identities=13% Similarity=0.139 Sum_probs=74.8
Q ss_pred CeEEEEecCCCchhhhHHHHHHHHHHHHhcCCceEEEechhHHH-HHHHHHHHHHHHhCCcccceeeeeeeec--cc--c
Q 001817 314 QVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRI-SAMAVSERVAAERGEKLGESVGYKVRLE--GM--K 388 (1009)
Q Consensus 314 ~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~IvvtqPrR~-La~qva~rva~e~~~~~g~~vGy~vr~e--~~--~ 388 (1009)
+..++.|..|||||..+.+.++..+... ..+.+++|+-|+.. +...+...+...... .|...-+..... .. .
T Consensus 2 ~~~i~~GgrgSGKS~~~~~~~~~~~~~~--~~~~~~~~~r~~~~sl~~sv~~~l~~~i~~-~g~~~~~~~~~~~~~i~~~ 78 (396)
T TIGR01547 2 EEIIAKGGRRSGKTFAIALKLVEKLAIN--KKQQNILAARKVQNSIRDSVFKDIENLLSI-EGINYEFKKSKSSMEIKIL 78 (396)
T ss_pred ceEEEeCCCCcccHHHHHHHHHHHHHhc--CCCcEEEEEehhhhHHHHHHHHHHHHHHHH-cCChhheeecCCccEEEec
Confidence 4578899999999998888887776653 24578888877776 555666666543321 121111111110 00 1
Q ss_pred CCCcEEEEEcc-HHHHHHHhcCCCCCCccEEEEeCCCcCCCcchHHHHHHHHHcccCCCCcEEEeccCCC
Q 001817 389 GRDTRLMFCTT-GILLRRLLVDRSLRGVTHVIVDEIHERGMNEDFLLIVLKELLPRRPELRLILMSATLN 457 (1009)
Q Consensus 389 ~~~t~Iiv~T~-g~Ll~~L~~~~~l~~is~IIIDEaHeR~~~~d~ll~llk~ll~~~~~lkvIlmSATl~ 457 (1009)
+.+..|+|..- +--- .+. ....+..+.+|||.+ +..+.+..++..+.. ......|++|.|++
T Consensus 79 ~~g~~i~f~g~~d~~~-~ik---~~~~~~~~~idEa~~--~~~~~~~~l~~rlr~-~~~~~~i~~t~NP~ 141 (396)
T TIGR01547 79 NTGKKFIFKGLNDKPN-KLK---SGAGIAIIWFEEASQ--LTFEDIKELIPRLRE-TGGKKFIIFSSNPE 141 (396)
T ss_pred CCCeEEEeecccCChh-Hhh---Ccceeeeehhhhhhh--cCHHHHHHHHHHhhc-cCCccEEEEEcCcC
Confidence 11345665443 1111 111 334478999999998 445555555555322 11212478888884
No 323
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=93.41 E-value=0.19 Score=61.37 Aligned_cols=34 Identities=18% Similarity=0.295 Sum_probs=23.3
Q ss_pred HhcCCCCCCccEEEEeCCCcCCCcchHHHHHHHHHc
Q 001817 406 LLVDRSLRGVTHVIVDEIHERGMNEDFLLIVLKELL 441 (1009)
Q Consensus 406 L~~~~~l~~is~IIIDEaHeR~~~~d~ll~llk~ll 441 (1009)
+...|...++.++||||+|. +.....-.+++.+-
T Consensus 111 ~~~~p~~~~~KVvIIDEa~~--Ls~~a~naLLK~LE 144 (563)
T PRK06647 111 IMFPPASSRYRVYIIDEVHM--LSNSAFNALLKTIE 144 (563)
T ss_pred HHhchhcCCCEEEEEEChhh--cCHHHHHHHHHhhc
Confidence 34456678999999999996 45444555555543
No 324
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=93.39 E-value=0.14 Score=57.87 Aligned_cols=53 Identities=28% Similarity=0.270 Sum_probs=33.2
Q ss_pred HHHHHHHhcCCCCCCccEEEEeCCCcCCCcchHHHHHHHHHcccCCCCcEEEecc
Q 001817 400 GILLRRLLVDRSLRGVTHVIVDEIHERGMNEDFLLIVLKELLPRRPELRLILMSA 454 (1009)
Q Consensus 400 g~Ll~~L~~~~~l~~is~IIIDEaHeR~~~~d~ll~llk~ll~~~~~lkvIlmSA 454 (1009)
..+.+.....+......+||||||+. +..|-.-++++.+.....+..+|+.+-
T Consensus 95 r~~~~~~~~~~~~~~~kviiidead~--mt~~A~nallk~lEep~~~~~~il~~n 147 (325)
T COG0470 95 RELAEFLSESPLEGGYKVVIIDEADK--LTEDAANALLKTLEEPPKNTRFILITN 147 (325)
T ss_pred HHHHHHhccCCCCCCceEEEeCcHHH--HhHHHHHHHHHHhccCCCCeEEEEEcC
Confidence 33444443344557899999999997 566666666666655445555555443
No 325
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=93.38 E-value=0.26 Score=54.21 Aligned_cols=44 Identities=20% Similarity=0.228 Sum_probs=30.0
Q ss_pred CCCCccEEEEeCCCcCCCcchHHHHHHHHHcccCCCCcEEEeccCC
Q 001817 411 SLRGVTHVIVDEIHERGMNEDFLLIVLKELLPRRPELRLILMSATL 456 (1009)
Q Consensus 411 ~l~~is~IIIDEaHeR~~~~d~ll~llk~ll~~~~~lkvIlmSATl 456 (1009)
....+.+||+||||. +..|...++.+.+-......++|+..--+
T Consensus 126 ~~~~fKiiIlDEcds--mtsdaq~aLrr~mE~~s~~trFiLIcnyl 169 (346)
T KOG0989|consen 126 PCPPFKIIILDECDS--MTSDAQAALRRTMEDFSRTTRFILICNYL 169 (346)
T ss_pred CCCcceEEEEechhh--hhHHHHHHHHHHHhccccceEEEEEcCCh
Confidence 566789999999997 66776666655554434456777765543
No 326
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=93.25 E-value=0.086 Score=60.21 Aligned_cols=48 Identities=19% Similarity=0.201 Sum_probs=32.9
Q ss_pred HHHHHHHcCCeEEEEecCCCchhhhHHHHHHHHHHHHhcCCceEEEechhHHHH
Q 001817 305 ALLKAISENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRIS 358 (1009)
Q Consensus 305 ~il~~l~~~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~IvvtqPrR~L 358 (1009)
-+-.++..+.+++|+|+|||||||.+- .++..+ ....+++.+..+.++
T Consensus 154 ~l~~~v~~~~nilI~G~tGSGKTTll~-aLl~~i-----~~~~rivtiEd~~El 201 (344)
T PRK13851 154 FLHACVVGRLTMLLCGPTGSGKTTMSK-TLISAI-----PPQERLITIEDTLEL 201 (344)
T ss_pred HHHHHHHcCCeEEEECCCCccHHHHHH-HHHccc-----CCCCCEEEECCCccc
Confidence 344556789999999999999997764 333322 233467777777655
No 327
>PRK06620 hypothetical protein; Validated
Probab=93.14 E-value=0.18 Score=53.81 Aligned_cols=38 Identities=16% Similarity=0.357 Sum_probs=23.2
Q ss_pred CccEEEEeCCCcCCCcchHHHHHHHHHcccCCCCcEEEeccCC
Q 001817 414 GVTHVIVDEIHERGMNEDFLLIVLKELLPRRPELRLILMSATL 456 (1009)
Q Consensus 414 ~is~IIIDEaHeR~~~~d~ll~llk~ll~~~~~lkvIlmSATl 456 (1009)
..++++|||+|. .....+..++..+.... +.|++|||-
T Consensus 85 ~~d~lliDdi~~--~~~~~lf~l~N~~~e~g---~~ilits~~ 122 (214)
T PRK06620 85 KYNAFIIEDIEN--WQEPALLHIFNIINEKQ---KYLLLTSSD 122 (214)
T ss_pred cCCEEEEecccc--chHHHHHHHHHHHHhcC---CEEEEEcCC
Confidence 347899999994 44445556555554432 356666664
No 328
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=92.95 E-value=0.49 Score=60.68 Aligned_cols=60 Identities=17% Similarity=0.298 Sum_probs=34.3
Q ss_pred HHHHHHHhcCCCCCCccEEEEeCCCcCCCcchHHHHHHHHHcccC----C------CCcEEEeccCCCHHHHHhhh
Q 001817 400 GILLRRLLVDRSLRGVTHVIVDEIHERGMNEDFLLIVLKELLPRR----P------ELRLILMSATLNAELFSSYF 465 (1009)
Q Consensus 400 g~Ll~~L~~~~~l~~is~IIIDEaHeR~~~~d~ll~llk~ll~~~----~------~lkvIlmSATl~~~~~~~yf 465 (1009)
|.|...+.. ..+++|+|||++. .+.++...++..+-... . .-.+|+|+..+..+.+.+.+
T Consensus 658 g~L~~~v~~----~p~svvllDEiek--a~~~v~~~Llq~ld~g~l~d~~Gr~vd~~n~iiI~TSNlg~~~~~~~~ 727 (852)
T TIGR03345 658 GVLTEAVRR----KPYSVVLLDEVEK--AHPDVLELFYQVFDKGVMEDGEGREIDFKNTVILLTSNAGSDLIMALC 727 (852)
T ss_pred chHHHHHHh----CCCcEEEEechhh--cCHHHHHHHHHHhhcceeecCCCcEEeccccEEEEeCCCchHHHHHhc
Confidence 455555554 3568999999986 55554433333221111 0 12478888887766665544
No 329
>PRK13342 recombination factor protein RarA; Reviewed
Probab=92.85 E-value=0.37 Score=56.77 Aligned_cols=19 Identities=32% Similarity=0.405 Sum_probs=16.2
Q ss_pred eEEEEecCCCchhhhHHHH
Q 001817 315 VVVVSGETGCGKTTQLPQY 333 (1009)
Q Consensus 315 ~vII~apTGSGKTt~~~~~ 333 (1009)
.+++.||+|+|||+.+-.+
T Consensus 38 ~ilL~GppGtGKTtLA~~i 56 (413)
T PRK13342 38 SMILWGPPGTGKTTLARII 56 (413)
T ss_pred eEEEECCCCCCHHHHHHHH
Confidence 7899999999999777554
No 330
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=92.84 E-value=0.27 Score=53.07 Aligned_cols=29 Identities=14% Similarity=0.291 Sum_probs=24.5
Q ss_pred HHcCCeEEEEecCCCchhhhHHHHHHHHH
Q 001817 310 ISENQVVVVSGETGCGKTTQLPQYILESE 338 (1009)
Q Consensus 310 l~~~~~vII~apTGSGKTt~~~~~ile~~ 338 (1009)
+..+..+++.|++||||||.+.+++...+
T Consensus 21 i~~g~~~~i~G~~G~GKTtl~~~~~~~~~ 49 (230)
T PRK08533 21 IPAGSLILIEGDESTGKSILSQRLAYGFL 49 (230)
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 45688999999999999999888887643
No 331
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=92.83 E-value=0.18 Score=57.04 Aligned_cols=55 Identities=22% Similarity=0.339 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHcCCeEEEEecCCCchhhhHHHHHHHHHHHHhcCCceEEEechhHHHH
Q 001817 301 KERDALLKAISENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRIS 358 (1009)
Q Consensus 301 ~~q~~il~~l~~~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~IvvtqPrR~L 358 (1009)
.+.+.+..++..+.+++|+|+|||||||.+- .++..... .....+++++..+.++
T Consensus 136 ~~~~~L~~~v~~~~~ilI~G~tGSGKTTll~-aL~~~~~~--~~~~~rivtIEd~~El 190 (319)
T PRK13894 136 AQREAIIAAVRAHRNILVIGGTGSGKTTLVN-AIINEMVI--QDPTERVFIIEDTGEI 190 (319)
T ss_pred HHHHHHHHHHHcCCeEEEECCCCCCHHHHHH-HHHHhhhh--cCCCceEEEEcCCCcc
Confidence 3445566678889999999999999996653 44443321 1234567776666654
No 332
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=92.72 E-value=0.4 Score=59.22 Aligned_cols=159 Identities=19% Similarity=0.217 Sum_probs=86.2
Q ss_pred HHHHHHHHHhhcCCCcEEEEcCCHhHHHHHHHHHHcCCCC---CCCCCeEEEEecCC-CCH---HHHHhhcCCCCCCceE
Q 001817 564 IEHVLCHIVKKERPGAVLVFMTGWDDINSLKDQLQAHPLL---GDPSRVLLLACHGS-MAS---SEQRLIFDKPEDGVRK 636 (1009)
Q Consensus 564 i~~ll~~i~~~~~~g~iLVFl~~~~~i~~l~~~L~~~~~~---~~~~~~~v~~lHs~-l~~---~er~~v~~~f~~G~~k 636 (1009)
+-+.+...++.-+.| +|||+|+..-.+++....+..... ....++.+.+=-+. .+. .--+.+..+-..|..-
T Consensus 549 lg~~i~~v~rvVp~G-~L~FfPSY~vmdk~~tfw~~~~~we~~~~vk~l~vEPr~k~~f~e~m~~y~~~i~~pes~ga~~ 627 (945)
T KOG1132|consen 549 LGEAILNVARVVPYG-LLIFFPSYPVMDKLITFWQNRGLWERMEKVKKLVVEPRSKSEFTEVMSRYYNAIADPESSGAVF 627 (945)
T ss_pred HHHHHHHHHhhcccc-eEEeccchHHHHHHHHHHHcchHHHHhhcccCceeccCCccchHHHHHHHHHHhhCccccceEE
Confidence 334555555555555 999999987777775555432110 00112223222111 111 1122344443356667
Q ss_pred EEEecCccccccCCCCe--eEEEeCCCCccccccCC--------------CCC-Ccc--cccccCHHhH---HhhhcccC
Q 001817 637 IVLATNMAETSITINDV--VFVIDCGKAKETSYDAL--------------NNT-PCL--LPSWISKAAA---RQRRGRAG 694 (1009)
Q Consensus 637 VLVATniae~GIdIp~V--~~VId~g~~k~~~yd~~--------------~~~-~~l--~~~~iS~as~---~QR~GRAG 694 (1009)
.-||-.-.++|+|+-|- +.||-.|+|--..-|+. .+. +++ ...|-+...| -|-+||+-
T Consensus 628 ~aVcRGKVSEGlDFsD~~~RaVI~tGlPyP~~~D~~V~lK~~y~D~~~~~~g~~s~~lsg~eWY~~qA~RAvNQAiGRvi 707 (945)
T KOG1132|consen 628 FAVCRGKVSEGLDFSDDNGRAVIITGLPYPPVMDPRVKLKKQYLDENSSLKGAKSQLLSGQEWYSQQAYRAVNQAIGRVI 707 (945)
T ss_pred EEEecccccCCCCccccCCceeEEecCCCCCCCCHHHHHHHHhhhhhccccccccccccchHHHHhhHHHHHHHHHHHHH
Confidence 77888889999999754 88899999866555542 111 112 2456555544 48889998
Q ss_pred CCCC--CcEEEecchhhhhhhccCCCcccccc
Q 001817 695 RVQP--GECYHLYPRYVYDAFADYQLPELLRT 724 (1009)
Q Consensus 695 R~~~--G~c~~Lys~~~~~~l~~~~~PEi~r~ 724 (1009)
|.+. |..+ |+....-+.=...+.|+..|.
T Consensus 708 RHR~D~Gav~-l~D~Rfe~~~~~~~lskw~r~ 738 (945)
T KOG1132|consen 708 RHRNDYGAVI-LCDDRFENADARSQLSKWIRS 738 (945)
T ss_pred hhhcccceee-EeechhhcCccccccchhhhc
Confidence 8866 6555 333322222333345655555
No 333
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.69 E-value=0.39 Score=59.27 Aligned_cols=51 Identities=20% Similarity=0.378 Sum_probs=30.4
Q ss_pred HHHHHhcCCCCCCccEEEEeCCCcCCCcchHHHHHHHHHcccCCCCcEEEeccC
Q 001817 402 LLRRLLVDRSLRGVTHVIVDEIHERGMNEDFLLIVLKELLPRRPELRLILMSAT 455 (1009)
Q Consensus 402 Ll~~L~~~~~l~~is~IIIDEaHeR~~~~d~ll~llk~ll~~~~~lkvIlmSAT 455 (1009)
++..+...|...+++++||||+|. +..+..-.+++.+-. .|+--++++.+|
T Consensus 109 li~~~~~~P~~~~~KVvIIdea~~--Ls~~a~naLLK~LEe-pp~~tifIL~tt 159 (614)
T PRK14971 109 LIEQVRIPPQIGKYKIYIIDEVHM--LSQAAFNAFLKTLEE-PPSYAIFILATT 159 (614)
T ss_pred HHHHHhhCcccCCcEEEEEECccc--CCHHHHHHHHHHHhC-CCCCeEEEEEeC
Confidence 334445567888999999999997 444444455544433 333333444444
No 334
>KOG2373 consensus Predicted mitochondrial DNA helicase twinkle [Replication, recombination and repair]
Probab=92.60 E-value=0.038 Score=61.01 Aligned_cols=36 Identities=39% Similarity=0.556 Sum_probs=28.9
Q ss_pred HHHHHHHHcCCeEEEEecCCCchhhhHHHHHHHHHH
Q 001817 304 DALLKAISENQVVVVSGETGCGKTTQLPQYILESET 339 (1009)
Q Consensus 304 ~~il~~l~~~~~vII~apTGSGKTt~~~~~ile~~~ 339 (1009)
..++.....|.-+|+.|||||||||...-|.++...
T Consensus 264 Nk~LkGhR~GElTvlTGpTGsGKTTFlsEYsLDL~~ 299 (514)
T KOG2373|consen 264 NKYLKGHRPGELTVLTGPTGSGKTTFLSEYSLDLFT 299 (514)
T ss_pred HHHhccCCCCceEEEecCCCCCceeEehHhhHHHHh
Confidence 344555556788999999999999999999888664
No 335
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=92.57 E-value=0.12 Score=57.27 Aligned_cols=68 Identities=22% Similarity=0.207 Sum_probs=41.0
Q ss_pred HHHHHHHHc----CCeEEEEecCCCchhhhHHHHHHHHHHHHhcCCceEEEechhHHHHHHHHHHHHHHHhCCc
Q 001817 304 DALLKAISE----NQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERGEK 373 (1009)
Q Consensus 304 ~~il~~l~~----~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~IvvtqPrR~La~qva~rva~e~~~~ 373 (1009)
++|.+.+.. .+++.|.|..|+|||+.+..++-+.. ......+.+.+.........++.+.+...++..
T Consensus 6 ~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~--~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~ 77 (287)
T PF00931_consen 6 EKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDLR--IKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEP 77 (287)
T ss_dssp HHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHHH--HCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC
T ss_pred HHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeecccccc--ccccccccccccccccccccccccccccccccc
Confidence 455555555 67899999999999988887764422 122234444444443333355566666666544
No 336
>PLN03025 replication factor C subunit; Provisional
Probab=92.56 E-value=0.68 Score=52.57 Aligned_cols=22 Identities=32% Similarity=0.477 Sum_probs=17.5
Q ss_pred CeEEEEecCCCchhhhHHHHHH
Q 001817 314 QVVVVSGETGCGKTTQLPQYIL 335 (1009)
Q Consensus 314 ~~vII~apTGSGKTt~~~~~il 335 (1009)
..+++.||+|+|||+.+-..+-
T Consensus 35 ~~lll~Gp~G~GKTtla~~la~ 56 (319)
T PLN03025 35 PNLILSGPPGTGKTTSILALAH 56 (319)
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999977765443
No 337
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=92.48 E-value=0.44 Score=54.34 Aligned_cols=27 Identities=26% Similarity=0.402 Sum_probs=20.2
Q ss_pred HHHHcC--CeEEEEecCCCchhhhHHHHH
Q 001817 308 KAISEN--QVVVVSGETGCGKTTQLPQYI 334 (1009)
Q Consensus 308 ~~l~~~--~~vII~apTGSGKTt~~~~~i 334 (1009)
.+++.+ .+.|+.||+|+||||.+-+..
T Consensus 41 r~v~~~~l~SmIl~GPPG~GKTTlA~liA 69 (436)
T COG2256 41 RAVEAGHLHSMILWGPPGTGKTTLARLIA 69 (436)
T ss_pred HHHhcCCCceeEEECCCCCCHHHHHHHHH
Confidence 445544 478999999999998876543
No 338
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=92.46 E-value=0.11 Score=57.38 Aligned_cols=47 Identities=30% Similarity=0.347 Sum_probs=30.9
Q ss_pred HHHHHHcCCeEEEEecCCCchhhhHHHHHHHHHHHHhcCCceEEEechhHHH
Q 001817 306 LLKAISENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRI 357 (1009)
Q Consensus 306 il~~l~~~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~IvvtqPrR~ 357 (1009)
+...+..+.+++|+|+|||||||..-.+ ++.+.. ...+|+++....+
T Consensus 120 l~~~v~~~~~ili~G~tGSGKTT~l~al-l~~i~~----~~~~iv~iEd~~E 166 (270)
T PF00437_consen 120 LRSAVRGRGNILISGPTGSGKTTLLNAL-LEEIPP----EDERIVTIEDPPE 166 (270)
T ss_dssp HHHCHHTTEEEEEEESTTSSHHHHHHHH-HHHCHT----TTSEEEEEESSS-
T ss_pred HhhccccceEEEEECCCccccchHHHHH-hhhccc----cccceEEeccccc
Confidence 3444567899999999999999887544 443321 1357777654433
No 339
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.41 E-value=0.28 Score=60.39 Aligned_cols=48 Identities=19% Similarity=0.218 Sum_probs=28.7
Q ss_pred HHHhcCCCCCCccEEEEeCCCcCCCcchHHHHHHHHHcccCCCCcEEEec
Q 001817 404 RRLLVDRSLRGVTHVIVDEIHERGMNEDFLLIVLKELLPRRPELRLILMS 453 (1009)
Q Consensus 404 ~~L~~~~~l~~is~IIIDEaHeR~~~~d~ll~llk~ll~~~~~lkvIlmS 453 (1009)
..+...|...+.++|||||+|. +...-.-.+++.+-.-.+...+|+++
T Consensus 117 e~~~~~P~~~~~KVvIIdEad~--Lt~~a~naLLK~LEePp~~tv~IL~t 164 (620)
T PRK14954 117 ENVRYGPQKGRYRVYIIDEVHM--LSTAAFNAFLKTLEEPPPHAIFIFAT 164 (620)
T ss_pred HHHHhhhhcCCCEEEEEeChhh--cCHHHHHHHHHHHhCCCCCeEEEEEe
Confidence 3344456788899999999997 44444444555443322344455544
No 340
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=92.40 E-value=0.15 Score=58.07 Aligned_cols=47 Identities=28% Similarity=0.272 Sum_probs=31.8
Q ss_pred HHHHHHcCCeEEEEecCCCchhhhHHHHHHHHHHHHhcCCceEEEechhHHHH
Q 001817 306 LLKAISENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRIS 358 (1009)
Q Consensus 306 il~~l~~~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~IvvtqPrR~L 358 (1009)
+..++..+.+++|+|+|||||||.+- .++..+ ....+|+++.-+.++
T Consensus 153 L~~~v~~~~nili~G~tgSGKTTll~-aL~~~i-----p~~~ri~tiEd~~El 199 (332)
T PRK13900 153 LEHAVISKKNIIISGGTSTGKTTFTN-AALREI-----PAIERLITVEDAREI 199 (332)
T ss_pred HHHHHHcCCcEEEECCCCCCHHHHHH-HHHhhC-----CCCCeEEEecCCCcc
Confidence 44466789999999999999998763 344433 223467776555444
No 341
>PRK10919 ATP-dependent DNA helicase Rep; Provisional
Probab=92.29 E-value=0.24 Score=61.99 Aligned_cols=105 Identities=20% Similarity=0.171 Sum_probs=65.3
Q ss_pred HHHHHHHHHHHcCCeEEEEecCCCchhhhHHHHHHHHHHHHhcCCceEEEechhHHHHHHHHHHHHHHHhCCcccceeee
Q 001817 301 KERDALLKAISENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERGEKLGESVGY 380 (1009)
Q Consensus 301 ~~q~~il~~l~~~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~IvvtqPrR~La~qva~rva~e~~~~~g~~vGy 380 (1009)
..|.+++.. .+..++|.|..|||||+.+..-+...+.. ..-....|+++..|+.+|.++.+|+.+.++..
T Consensus 5 ~~Q~~av~~--~~g~~lV~AgpGSGKT~vL~~Ria~Li~~-~~v~p~~IL~lTFT~kAA~em~~Rl~~~l~~~------- 74 (672)
T PRK10919 5 PGQQQAVEF--VTGPCLVLAGAGSGKTRVITNKIAHLIRG-CGYQARHIAAVTFTNKAAREMKERVAQTLGRK------- 74 (672)
T ss_pred HHHHHHHhC--CCCCEEEEecCCCCHHHHHHHHHHHHHHh-cCCCHHHeeeEechHHHHHHHHHHHHHHhCcc-------
Confidence 345555443 35667888999999998877666554422 12234579999999999999999998766521
Q ss_pred eeeeccccCCCcEEEEEccHHHHHHHhcCC--CCC-CccEEEEeCCC
Q 001817 381 KVRLEGMKGRDTRLMFCTTGILLRRLLVDR--SLR-GVTHVIVDEIH 424 (1009)
Q Consensus 381 ~vr~e~~~~~~t~Iiv~T~g~Ll~~L~~~~--~l~-~is~IIIDEaH 424 (1009)
....+.|+|--.+...+.... .+. .-++-|+|+.+
T Consensus 75 ---------~~~~v~i~TfHS~~~~iLr~~~~~~g~~~~~~i~d~~~ 112 (672)
T PRK10919 75 ---------EARGLMISTFHTLGLDIIKREYAALGMKSNFSLFDDTD 112 (672)
T ss_pred ---------cccCcEEEcHHHHHHHHHHHHHHHhCCCCCCeeCCHHH
Confidence 112467888766554443221 111 11345667755
No 342
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=92.29 E-value=0.8 Score=61.51 Aligned_cols=124 Identities=16% Similarity=0.120 Sum_probs=67.4
Q ss_pred HHHHHHHHHHHH--cCCeEEEEecCCCchhhhHHHHHHHHHHHHhcCCceEEEechhHHHHHHHHHHHHHHHhCCcccce
Q 001817 300 YKERDALLKAIS--ENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERGEKLGES 377 (1009)
Q Consensus 300 ~~~q~~il~~l~--~~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~IvvtqPrR~La~qva~rva~e~~~~~g~~ 377 (1009)
...|.+.+..+. .++.++|.|..|+||||.+-.. ++.+.......+..|+.++||--+|..+.+ .|...
T Consensus 837 t~~Qr~Av~~iLts~dr~~~IqG~AGTGKTT~l~~i-~~~~~~l~e~~g~~V~glAPTgkAa~~L~e-----~Gi~A--- 907 (1623)
T PRK14712 837 TSGQRAATRMILETSDRFTVVQGYAGVGKTTQFRAV-MSAVNMLPESERPRVVGLGPTHRAVGEMRS-----AGVDA--- 907 (1623)
T ss_pred CHHHHHHHHHHHhCCCceEEEEeCCCCCHHHHHHHH-HHHHHHHhhccCceEEEEechHHHHHHHHH-----hCchH---
Confidence 344444444444 4689999999999999875322 222111112234567778899887766642 12110
Q ss_pred eeeeeeeccccCCCcEEEEEccHHHHHH-----HhcCCCCCCccEEEEeCCCcCCCcchHHHHHHHHHcccCCCCcEEEe
Q 001817 378 VGYKVRLEGMKGRDTRLMFCTTGILLRR-----LLVDRSLRGVTHVIVDEIHERGMNEDFLLIVLKELLPRRPELRLILM 452 (1009)
Q Consensus 378 vGy~vr~e~~~~~~t~Iiv~T~g~Ll~~-----L~~~~~l~~is~IIIDEaHeR~~~~d~ll~llk~ll~~~~~lkvIlm 452 (1009)
.|-..+|.. ...+......++|||||+=. +....+..+++.+. ..+.|+|++
T Consensus 908 -------------------~TIasfL~~~~~~~~~~~~~~~~~~llIVDEASM--V~~~~m~~ll~~~~--~~garvVLV 964 (1623)
T PRK14712 908 -------------------QTLASFLHDTQLQQRSGETPDFSNTLFLLDESSM--VGNTDMARAYALIA--AGGGRAVAS 964 (1623)
T ss_pred -------------------hhHHHHhccccchhhcccCCCCCCcEEEEEcccc--ccHHHHHHHHHhhh--hCCCEEEEE
Confidence 111111110 01111223458999999985 55554445554432 245788887
Q ss_pred ccC
Q 001817 453 SAT 455 (1009)
Q Consensus 453 SAT 455 (1009)
.=+
T Consensus 965 GD~ 967 (1623)
T PRK14712 965 GDT 967 (1623)
T ss_pred cch
Confidence 655
No 343
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=92.29 E-value=0.98 Score=51.14 Aligned_cols=59 Identities=20% Similarity=0.142 Sum_probs=38.4
Q ss_pred EEEEccHHHHHHHhcCCCCCCccEEEEeCCCcCCCcchHHHHHHHHHcccCCCCcEEEeccC
Q 001817 394 LMFCTTGILLRRLLVDRSLRGVTHVIVDEIHERGMNEDFLLIVLKELLPRRPELRLILMSAT 455 (1009)
Q Consensus 394 Iiv~T~g~Ll~~L~~~~~l~~is~IIIDEaHeR~~~~d~ll~llk~ll~~~~~lkvIlmSAT 455 (1009)
|-+-..-.+.+.+...+....++++||||+|. ++..-.-.++|.+-. .|+..+|++|..
T Consensus 104 I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~--m~~~aaNaLLK~LEE-Pp~~~fILi~~~ 162 (314)
T PRK07399 104 IRLEQIREIKRFLSRPPLEAPRKVVVIEDAET--MNEAAANALLKTLEE-PGNGTLILIAPS 162 (314)
T ss_pred CcHHHHHHHHHHHccCcccCCceEEEEEchhh--cCHHHHHHHHHHHhC-CCCCeEEEEECC
Confidence 33333345666666677778999999999997 566655666666533 445556665543
No 344
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=92.26 E-value=0.62 Score=52.71 Aligned_cols=53 Identities=26% Similarity=0.233 Sum_probs=36.9
Q ss_pred HHHHHHhcCCCCCCccEEEEeCCCcCCCcchHHHHHHHHHcccCCCCcEEEeccC
Q 001817 401 ILLRRLLVDRSLRGVTHVIVDEIHERGMNEDFLLIVLKELLPRRPELRLILMSAT 455 (1009)
Q Consensus 401 ~Ll~~L~~~~~l~~is~IIIDEaHeR~~~~d~ll~llk~ll~~~~~lkvIlmSAT 455 (1009)
.+.+.+...+.....+++||||||. ++..-.-++||.+-.-.++..+|+.|..
T Consensus 100 ~l~~~~~~~p~~g~~kV~iI~~ae~--m~~~AaNaLLKtLEEPp~~~~fiL~~~~ 152 (319)
T PRK08769 100 EISQKLALTPQYGIAQVVIVDPADA--INRAACNALLKTLEEPSPGRYLWLISAQ 152 (319)
T ss_pred HHHHHHhhCcccCCcEEEEeccHhh--hCHHHHHHHHHHhhCCCCCCeEEEEECC
Confidence 3445555566677899999999997 6777777778866554445666666654
No 345
>PRK09087 hypothetical protein; Validated
Probab=92.26 E-value=0.81 Score=49.27 Aligned_cols=19 Identities=42% Similarity=0.635 Sum_probs=16.0
Q ss_pred CCeEEEEecCCCchhhhHH
Q 001817 313 NQVVVVSGETGCGKTTQLP 331 (1009)
Q Consensus 313 ~~~vII~apTGSGKTt~~~ 331 (1009)
++.++|.||+|||||+.+-
T Consensus 44 ~~~l~l~G~~GsGKThLl~ 62 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLAS 62 (226)
T ss_pred CCeEEEECCCCCCHHHHHH
Confidence 5668999999999996655
No 346
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=92.24 E-value=0.43 Score=56.64 Aligned_cols=35 Identities=20% Similarity=0.325 Sum_probs=22.5
Q ss_pred CeEEEEecCCCchhhhHHHHHHHHHHHHhcCCceEEEech
Q 001817 314 QVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQ 353 (1009)
Q Consensus 314 ~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~Ivvtq 353 (1009)
+.+++.||+|+|||+.+- .+...+.. .+..++++.
T Consensus 142 npl~L~G~~G~GKTHLl~-Ai~~~l~~----~~~~v~yi~ 176 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQ-AAVHALRE----SGGKILYVR 176 (445)
T ss_pred ceEEEEcCCCCCHHHHHH-HHHHHHHH----cCCCEEEee
Confidence 468899999999995544 44444432 134566653
No 347
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=92.19 E-value=0.35 Score=54.81 Aligned_cols=52 Identities=17% Similarity=0.209 Sum_probs=35.5
Q ss_pred HHHHHhcCCCCCCccEEEEeCCCcCCCcchHHHHHHHHHcccCCCCcEEEeccC
Q 001817 402 LLRRLLVDRSLRGVTHVIVDEIHERGMNEDFLLIVLKELLPRRPELRLILMSAT 455 (1009)
Q Consensus 402 Ll~~L~~~~~l~~is~IIIDEaHeR~~~~d~ll~llk~ll~~~~~lkvIlmSAT 455 (1009)
+.+.+...+.....+++|||+||. ++..-.-++||.+-.-.++.-+|+.|..
T Consensus 95 l~~~~~~~~~~g~~KV~iI~~a~~--m~~~AaNaLLKtLEEPp~~~~fiL~t~~ 146 (325)
T PRK06871 95 INEKVSQHAQQGGNKVVYIQGAER--LTEAAANALLKTLEEPRPNTYFLLQADL 146 (325)
T ss_pred HHHHHhhccccCCceEEEEechhh--hCHHHHHHHHHHhcCCCCCeEEEEEECC
Confidence 344455556778899999999997 6667777778777664445555554443
No 348
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=92.09 E-value=0.23 Score=55.74 Aligned_cols=51 Identities=24% Similarity=0.212 Sum_probs=33.6
Q ss_pred HHHHHHHHcCCeEEEEecCCCchhhhHHHHHHHHHHHHhcCCceEEEechhHHHHHH
Q 001817 304 DALLKAISENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAM 360 (1009)
Q Consensus 304 ~~il~~l~~~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~IvvtqPrR~La~ 360 (1009)
+-+..++....+++|+|.|||||||.+--++.. -...-+|+|+.-|.+|-.
T Consensus 164 ~~L~~av~~r~NILisGGTGSGKTTlLNal~~~------i~~~eRvItiEDtaELql 214 (355)
T COG4962 164 KFLRRAVGIRCNILISGGTGSGKTTLLNALSGF------IDSDERVITIEDTAELQL 214 (355)
T ss_pred HHHHHHHhhceeEEEeCCCCCCHHHHHHHHHhc------CCCcccEEEEeehhhhcc
Confidence 444455555669999999999999765433321 112238999887777643
No 349
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=92.09 E-value=0.27 Score=54.14 Aligned_cols=29 Identities=21% Similarity=0.428 Sum_probs=25.1
Q ss_pred HHcCCeEEEEecCCCchhhhHHHHHHHHH
Q 001817 310 ISENQVVVVSGETGCGKTTQLPQYILESE 338 (1009)
Q Consensus 310 l~~~~~vII~apTGSGKTt~~~~~ile~~ 338 (1009)
+..+..++|.|++|+|||+.+.|++.+.+
T Consensus 33 ip~gs~~lI~G~pGtGKT~l~~qf~~~~a 61 (259)
T TIGR03878 33 IPAYSVINITGVSDTGKSLMVEQFAVTQA 61 (259)
T ss_pred eECCcEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 34688999999999999999999988754
No 350
>PRK10865 protein disaggregation chaperone; Provisional
Probab=92.05 E-value=1.1 Score=57.73 Aligned_cols=121 Identities=22% Similarity=0.323 Sum_probs=59.7
Q ss_pred eEEEEecCCCchhhhHHHHHHHHHHHHhcCCceEEEechhHHHHHHHHHHHHHHHhCCcccceeeeeeeeccccCCCcEE
Q 001817 315 VVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERGEKLGESVGYKVRLEGMKGRDTRL 394 (1009)
Q Consensus 315 ~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~IvvtqPrR~La~qva~rva~e~~~~~g~~vGy~vr~e~~~~~~t~I 394 (1009)
.++++||||+|||+.+- .+.+.+.. . ....|.+ ........ ..+...+|...| .+||..
T Consensus 600 ~~Lf~Gp~G~GKT~lA~-aLa~~l~~--~-~~~~i~i--d~se~~~~--~~~~~LiG~~pg-y~g~~~------------ 658 (857)
T PRK10865 600 SFLFLGPTGVGKTELCK-ALANFMFD--S-DDAMVRI--DMSEFMEK--HSVSRLVGAPPG-YVGYEE------------ 658 (857)
T ss_pred eEEEECCCCCCHHHHHH-HHHHHhhc--C-CCcEEEE--EhHHhhhh--hhHHHHhCCCCc-ccccch------------
Confidence 68899999999998764 34443321 1 1223322 22222111 123333443322 344321
Q ss_pred EEEccHHHHHHHhcCCCCCCccEEEEeCCCcCCCcchHHHHHHHHHccc--------CCCCc--EEEeccCCCHHHHHhh
Q 001817 395 MFCTTGILLRRLLVDRSLRGVTHVIVDEIHERGMNEDFLLIVLKELLPR--------RPELR--LILMSATLNAELFSSY 464 (1009)
Q Consensus 395 iv~T~g~Ll~~L~~~~~l~~is~IIIDEaHeR~~~~d~ll~llk~ll~~--------~~~lk--vIlmSATl~~~~~~~y 464 (1009)
-|.+...+.. ..+++|+|||++. .+.+....++..+-.. .-+.+ +|+||..+..+.+.+.
T Consensus 659 ----~g~l~~~v~~----~p~~vLllDEiek--a~~~v~~~Ll~ile~g~l~d~~gr~vd~rn~iiI~TSN~g~~~~~~~ 728 (857)
T PRK10865 659 ----GGYLTEAVRR----RPYSVILLDEVEK--AHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSNLGSDLIQER 728 (857)
T ss_pred ----hHHHHHHHHh----CCCCeEEEeehhh--CCHHHHHHHHHHHhhCceecCCceEEeecccEEEEeCCcchHHHHHh
Confidence 1223333322 3457999999996 5555555544433211 01233 5677777655555544
Q ss_pred hC
Q 001817 465 FG 466 (1009)
Q Consensus 465 f~ 466 (1009)
|+
T Consensus 729 ~~ 730 (857)
T PRK10865 729 FG 730 (857)
T ss_pred cc
Confidence 44
No 351
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=92.01 E-value=0.34 Score=55.25 Aligned_cols=50 Identities=14% Similarity=0.056 Sum_probs=31.8
Q ss_pred HHHHhcCCCCCCccEEEEeCCCcCCCcchHHHHHHHHHcccCCCCcEEEecc
Q 001817 403 LRRLLVDRSLRGVTHVIVDEIHERGMNEDFLLIVLKELLPRRPELRLILMSA 454 (1009)
Q Consensus 403 l~~L~~~~~l~~is~IIIDEaHeR~~~~d~ll~llk~ll~~~~~lkvIlmSA 454 (1009)
...+...+...+.+++||||+|. ++.+..-.++|.+-.-.++..+|+.+.
T Consensus 99 ~~~~~~~~~~~~~kvviI~~a~~--~~~~a~NaLLK~LEEPp~~~~~Il~t~ 148 (329)
T PRK08058 99 KEEFSKSGVESNKKVYIIEHADK--MTASAANSLLKFLEEPSGGTTAILLTE 148 (329)
T ss_pred HHHHhhCCcccCceEEEeehHhh--hCHHHHHHHHHHhcCCCCCceEEEEeC
Confidence 33444455677889999999997 555555666666654444555555433
No 352
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=91.99 E-value=0.11 Score=55.83 Aligned_cols=20 Identities=35% Similarity=0.630 Sum_probs=15.9
Q ss_pred EEEEecCCCchhhhHHHHHH
Q 001817 316 VVVSGETGCGKTTQLPQYIL 335 (1009)
Q Consensus 316 vII~apTGSGKTt~~~~~il 335 (1009)
++|.|+.|||||+.+...+-
T Consensus 1 ~vv~G~pGsGKSt~i~~~~~ 20 (234)
T PF01443_consen 1 IVVHGVPGSGKSTLIKKLLK 20 (234)
T ss_pred CEEEcCCCCCHHHHHHHHHH
Confidence 47899999999987665553
No 353
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.93 E-value=0.5 Score=54.73 Aligned_cols=30 Identities=40% Similarity=0.561 Sum_probs=21.6
Q ss_pred HHHHHHHHcC---CeEEEEecCCCchhhhHHHH
Q 001817 304 DALLKAISEN---QVVVVSGETGCGKTTQLPQY 333 (1009)
Q Consensus 304 ~~il~~l~~~---~~vII~apTGSGKTt~~~~~ 333 (1009)
+.+...+.++ +.++++||.|+|||+.+-.+
T Consensus 27 ~~l~~~i~~~~~~~~~L~~G~~G~GKt~~a~~l 59 (367)
T PRK14970 27 NTLLNAIENNHLAQALLFCGPRGVGKTTCARIL 59 (367)
T ss_pred HHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHH
Confidence 3445555554 37889999999999777655
No 354
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=91.87 E-value=0.34 Score=52.30 Aligned_cols=29 Identities=21% Similarity=0.469 Sum_probs=24.8
Q ss_pred HHcCCeEEEEecCCCchhhhHHHHHHHHH
Q 001817 310 ISENQVVVVSGETGCGKTTQLPQYILESE 338 (1009)
Q Consensus 310 l~~~~~vII~apTGSGKTt~~~~~ile~~ 338 (1009)
+..+..++|.|++|||||+.+.+++.+.+
T Consensus 22 ~~~g~~~~i~G~~GsGKt~l~~~~~~~~~ 50 (234)
T PRK06067 22 IPFPSLILIEGDHGTGKSVLSQQFVYGAL 50 (234)
T ss_pred CcCCcEEEEECCCCCChHHHHHHHHHHHH
Confidence 44578999999999999999999887754
No 355
>PRK04195 replication factor C large subunit; Provisional
Probab=91.87 E-value=0.98 Score=54.39 Aligned_cols=22 Identities=23% Similarity=0.419 Sum_probs=18.0
Q ss_pred CCeEEEEecCCCchhhhHHHHH
Q 001817 313 NQVVVVSGETGCGKTTQLPQYI 334 (1009)
Q Consensus 313 ~~~vII~apTGSGKTt~~~~~i 334 (1009)
.+.+++.||+|+|||+.+-.++
T Consensus 39 ~~~lLL~GppG~GKTtla~ala 60 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLAHALA 60 (482)
T ss_pred CCeEEEECCCCCCHHHHHHHHH
Confidence 4689999999999997775443
No 356
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=91.67 E-value=0.23 Score=51.63 Aligned_cols=29 Identities=38% Similarity=0.517 Sum_probs=23.4
Q ss_pred HHHHHHHHHcCCeEEEEecCCCchhhhHH
Q 001817 303 RDALLKAISENQVVVVSGETGCGKTTQLP 331 (1009)
Q Consensus 303 q~~il~~l~~~~~vII~apTGSGKTt~~~ 331 (1009)
.+-+...+..+.+++|+|||||||||.+-
T Consensus 15 ~~~l~~~v~~g~~i~I~G~tGSGKTTll~ 43 (186)
T cd01130 15 AAYLWLAVEARKNILISGGTGSGKTTLLN 43 (186)
T ss_pred HHHHHHHHhCCCEEEEECCCCCCHHHHHH
Confidence 34455567789999999999999998764
No 357
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=91.29 E-value=0.65 Score=56.61 Aligned_cols=45 Identities=18% Similarity=0.127 Sum_probs=25.5
Q ss_pred CeEEEEecCCCchhhhHHHHHHHHHHHHhcCCceEEEechhHHHHHHHH
Q 001817 314 QVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAV 362 (1009)
Q Consensus 314 ~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~IvvtqPrR~La~qv 362 (1009)
+.++|.|++|+|||..+- .+...+... ..+.+++++ +...++.+.
T Consensus 315 NpL~LyG~sGsGKTHLL~-AIa~~a~~~--~~g~~V~Yi-taeef~~el 359 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLH-AIGHYARRL--YPGTRVRYV-SSEEFTNEF 359 (617)
T ss_pred CcEEEECCCCCCHHHHHH-HHHHHHHHh--CCCCeEEEe-eHHHHHHHH
Confidence 348999999999995443 333333221 123466665 344444443
No 358
>COG4626 Phage terminase-like protein, large subunit [General function prediction only]
Probab=91.09 E-value=1.3 Score=52.77 Aligned_cols=152 Identities=14% Similarity=0.067 Sum_probs=87.9
Q ss_pred CCCCHHHHHHHHHHHHc----------CCeEEEEecCCCchhhhHHHHHHHHHHHHhcCCceEEEechhHHHHHHHHHHH
Q 001817 296 SLPSYKERDALLKAISE----------NQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSER 365 (1009)
Q Consensus 296 ~LPi~~~q~~il~~l~~----------~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~IvvtqPrR~La~qva~r 365 (1009)
.++..++|.-|+.+|.. -...+|..|-|-|||+.+.-+++...+-.. ..+..+.+++|+..-|.+....
T Consensus 59 p~~l~PwQkFiia~l~G~~~k~T~~rrf~e~fI~v~RkngKt~l~A~i~~~~~l~~~-~~~~~~~i~A~s~~qa~~~F~~ 137 (546)
T COG4626 59 PESLEPWQKFIVAALFGFYDKQTGIRRFKEAFIFIPRKNGKSTLAAGIMMTALLLNW-RSGAGIYILAPSVEQAANSFNP 137 (546)
T ss_pred ccccchHHHHHHHHHhceeecCCCceEEEEEEEEEecCCchHHHHHHHHHHHHHhhh-hcCCcEEEEeccHHHHHHhhHH
Confidence 35667788888888862 235788899999999887744443333222 3455788888999888887776
Q ss_pred HHHHhCCcc--cceeeeeeeeccccCCCcEEEEEccHHHHHHHhcCC---CCCCccEEEEeCCCcCCCcchHHHHHHHHH
Q 001817 366 VAAERGEKL--GESVGYKVRLEGMKGRDTRLMFCTTGILLRRLLVDR---SLRGVTHVIVDEIHERGMNEDFLLIVLKEL 440 (1009)
Q Consensus 366 va~e~~~~~--g~~vGy~vr~e~~~~~~t~Iiv~T~g~Ll~~L~~~~---~l~~is~IIIDEaHeR~~~~d~ll~llk~l 440 (1009)
++......- ...++++. ....|.+.-....++.+..++ .-.+..+.|+||.|+.+-..+ +...++.-
T Consensus 138 ar~mv~~~~~l~~~~~~q~-------~s~~i~~~~~~s~ik~~aa~~~~~Dg~~~~~~I~DEih~f~~~~~-~~~~~~~g 209 (546)
T COG4626 138 ARDMVKRDDDLRDLCNVQT-------HSRTITHRKTDSTIKAVAADPNTVDGLNSVGAIIDELHLFGKQED-MYSEAKGG 209 (546)
T ss_pred HHHHHHhCcchhhhhcccc-------ceeEEEecccceeeeeeccCCCcccCCCcceEEEehhhhhcCHHH-HHHHHHhh
Confidence 654432111 11111111 011122222233334444443 344678999999997433223 33444555
Q ss_pred cccCCCCcEEEeccCC
Q 001817 441 LPRRPELRLILMSATL 456 (1009)
Q Consensus 441 l~~~~~lkvIlmSATl 456 (1009)
+..+|+.+++..|-.-
T Consensus 210 ~~ar~~~l~~~ITT~g 225 (546)
T COG4626 210 LGARPEGLVVYITTSG 225 (546)
T ss_pred hccCcCceEEEEecCC
Confidence 5667888888777643
No 359
>PRK11823 DNA repair protein RadA; Provisional
Probab=91.05 E-value=0.3 Score=57.98 Aligned_cols=88 Identities=22% Similarity=0.293 Sum_probs=51.7
Q ss_pred HHcCCeEEEEecCCCchhhhHHHHHHHHHHHHhcCCceEEEechhHHHHHHHHHHHHHHHhCCcccceeeeeeeeccccC
Q 001817 310 ISENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERGEKLGESVGYKVRLEGMKG 389 (1009)
Q Consensus 310 l~~~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~IvvtqPrR~La~qva~rva~e~~~~~g~~vGy~vr~e~~~~ 389 (1009)
+..+..++|.|++|+||||.+.+++.+.. . .+ .+++++. ..+...|+..+. ..++.....
T Consensus 77 i~~Gs~~lI~G~pG~GKTtL~lq~a~~~a-~--~g--~~vlYvs-~Ees~~qi~~ra-~rlg~~~~~------------- 136 (446)
T PRK11823 77 LVPGSVVLIGGDPGIGKSTLLLQVAARLA-A--AG--GKVLYVS-GEESASQIKLRA-ERLGLPSDN------------- 136 (446)
T ss_pred ccCCEEEEEECCCCCCHHHHHHHHHHHHH-h--cC--CeEEEEE-ccccHHHHHHHH-HHcCCChhc-------------
Confidence 45578999999999999999999887644 1 22 3444432 334455666553 333332111
Q ss_pred CCcEEEEEc---cHHHHHHHhcCCCCCCccEEEEeCCCc
Q 001817 390 RDTRLMFCT---TGILLRRLLVDRSLRGVTHVIVDEIHE 425 (1009)
Q Consensus 390 ~~t~Iiv~T---~g~Ll~~L~~~~~l~~is~IIIDEaHe 425 (1009)
+.+.. -..+++.+.. .+.++||||+++.
T Consensus 137 ----l~~~~e~~l~~i~~~i~~----~~~~lVVIDSIq~ 167 (446)
T PRK11823 137 ----LYLLAETNLEAILATIEE----EKPDLVVIDSIQT 167 (446)
T ss_pred ----EEEeCCCCHHHHHHHHHh----hCCCEEEEechhh
Confidence 22221 1334444321 3578999999983
No 360
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=90.96 E-value=1.4 Score=59.96 Aligned_cols=125 Identities=17% Similarity=0.144 Sum_probs=68.6
Q ss_pred CHHHHHHHHHHHHc--CCeEEEEecCCCchhhhHHHHHHHHHHHHhcCCceEEEechhHHHHHHHHHHHHHHHhCCcccc
Q 001817 299 SYKERDALLKAISE--NQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERGEKLGE 376 (1009)
Q Consensus 299 i~~~q~~il~~l~~--~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~IvvtqPrR~La~qva~rva~e~~~~~g~ 376 (1009)
....|.+.+..+.. ++.++|+|..|+||||.+-. +++.+.......+..|+.++||--+|..+.+ .|..
T Consensus 968 Lt~~Q~~Av~~il~s~dr~~~I~G~AGTGKTT~l~~-v~~~~~~l~~~~~~~V~glAPTgrAAk~L~e-----~Gi~--- 1038 (1747)
T PRK13709 968 LTSGQRAATRMILESTDRFTVVQGYAGVGKTTQFRA-VMSAVNTLPESERPRVVGLGPTHRAVGEMRS-----AGVD--- 1038 (1747)
T ss_pred CCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHHHHH-HHHHHHHhhcccCceEEEECCcHHHHHHHHh-----cCcc---
Confidence 34444555555544 57999999999999977543 3232211112233467777899877765432 1211
Q ss_pred eeeeeeeeccccCCCcEEEEEccHHHHHHH----hc-CCCCCCccEEEEeCCCcCCCcchHHHHHHHHHcccCCCCcEEE
Q 001817 377 SVGYKVRLEGMKGRDTRLMFCTTGILLRRL----LV-DRSLRGVTHVIVDEIHERGMNEDFLLIVLKELLPRRPELRLIL 451 (1009)
Q Consensus 377 ~vGy~vr~e~~~~~~t~Iiv~T~g~Ll~~L----~~-~~~l~~is~IIIDEaHeR~~~~d~ll~llk~ll~~~~~lkvIl 451 (1009)
-.|-..++... .+ +.....-++|||||+=. ++...+..+++.+.. .+.|+|+
T Consensus 1039 -------------------A~TI~s~L~~~~~~~~~~~~~~~~~~llIVDEaSM--v~~~~m~~Ll~~~~~--~garvVL 1095 (1747)
T PRK13709 1039 -------------------AQTLASFLHDTQLQQRSGETPDFSNTLFLLDESSM--VGNTDMARAYALIAA--GGGRAVS 1095 (1747)
T ss_pred -------------------hhhHHHHhcccccccccccCCCCCCcEEEEEcccc--ccHHHHHHHHHhhhc--CCCEEEE
Confidence 01222222110 00 11223448999999985 666655566555432 3568887
Q ss_pred eccC
Q 001817 452 MSAT 455 (1009)
Q Consensus 452 mSAT 455 (1009)
+-=+
T Consensus 1096 VGD~ 1099 (1747)
T PRK13709 1096 SGDT 1099 (1747)
T ss_pred ecch
Confidence 7644
No 361
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=90.86 E-value=0.21 Score=59.66 Aligned_cols=53 Identities=23% Similarity=0.320 Sum_probs=37.0
Q ss_pred HHHHHhcCCCCCCccEEEEeCCCcCCCcchHHHHHHHHHcccCCCCcEEEeccCCCH
Q 001817 402 LLRRLLVDRSLRGVTHVIVDEIHERGMNEDFLLIVLKELLPRRPELRLILMSATLNA 458 (1009)
Q Consensus 402 Ll~~L~~~~~l~~is~IIIDEaHeR~~~~d~ll~llk~ll~~~~~lkvIlmSATl~~ 458 (1009)
+.+...-.|.-.++.+.||||||. +.....-++||.+-.-.+.+.+|+ ||-+.
T Consensus 107 i~e~v~y~P~~~ryKVyiIDEvHM--LS~~afNALLKTLEEPP~hV~FIl--ATTe~ 159 (515)
T COG2812 107 IIEKVNYAPSEGRYKVYIIDEVHM--LSKQAFNALLKTLEEPPSHVKFIL--ATTEP 159 (515)
T ss_pred HHHHhccCCccccceEEEEecHHh--hhHHHHHHHhcccccCccCeEEEE--ecCCc
Confidence 455555567888999999999996 667777788888766444444444 56433
No 362
>PRK05973 replicative DNA helicase; Provisional
Probab=90.44 E-value=0.34 Score=52.39 Aligned_cols=48 Identities=17% Similarity=0.282 Sum_probs=35.9
Q ss_pred HHHHhhcCCCCHHHHHHHHHHHHcCCeEEEEecCCCchhhhHHHHHHHHH
Q 001817 289 KMLEFRRSLPSYKERDALLKAISENQVVVVSGETGCGKTTQLPQYILESE 338 (1009)
Q Consensus 289 ~l~~~r~~LPi~~~q~~il~~l~~~~~vII~apTGSGKTt~~~~~ile~~ 338 (1009)
+++..+..-+.. .+++...+..+..++|.|++|+|||+.+.+++.+.+
T Consensus 42 ~~~~~~~~~~~p--~~~l~GGl~~Gsl~LIaG~PG~GKT~lalqfa~~~a 89 (237)
T PRK05973 42 SLLAAKAAATTP--AEELFSQLKPGDLVLLGARPGHGKTLLGLELAVEAM 89 (237)
T ss_pred HHHHHhccCCCC--HHHhcCCCCCCCEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 345544433332 355777788899999999999999999999988765
No 363
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=90.34 E-value=0.43 Score=54.94 Aligned_cols=31 Identities=35% Similarity=0.627 Sum_probs=22.2
Q ss_pred HHHHH-cCCeEEEEecCCCchhhhHHHHHHHHH
Q 001817 307 LKAIS-ENQVVVVSGETGCGKTTQLPQYILESE 338 (1009)
Q Consensus 307 l~~l~-~~~~vII~apTGSGKTt~~~~~ile~~ 338 (1009)
.+.+. .+..++|+|||||||||.+- .++..+
T Consensus 127 ~~~~~~~~glilI~GpTGSGKTTtL~-aLl~~i 158 (358)
T TIGR02524 127 IDAIAPQEGIVFITGATGSGKSTLLA-AIIREL 158 (358)
T ss_pred HHHHhccCCEEEEECCCCCCHHHHHH-HHHHHH
Confidence 33443 67899999999999998763 444443
No 364
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=90.31 E-value=0.56 Score=58.86 Aligned_cols=105 Identities=19% Similarity=0.162 Sum_probs=67.0
Q ss_pred HHHHHHHHHHcCCeEEEEecCCCchhhhHHHHHHHHHHHHhcCCceEEEechhHHHHHHHHHHHHHHHhCCcccceeeee
Q 001817 302 ERDALLKAISENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERGEKLGESVGYK 381 (1009)
Q Consensus 302 ~q~~il~~l~~~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~IvvtqPrR~La~qva~rva~e~~~~~g~~vGy~ 381 (1009)
.|.+++.. ....++|.|..|||||+.+..-+...+... .-....|+++..|+.+|.++-+|+.+.++..
T Consensus 5 ~Q~~av~~--~~~~~~V~Ag~GSGKT~~L~~ri~~ll~~~-~~~p~~IL~vTFt~~Aa~em~~Rl~~~l~~~-------- 73 (664)
T TIGR01074 5 QQQEAVEY--VTGPCLVLAGAGSGKTRVITNKIAYLIQNC-GYKARNIAAVTFTNKAAREMKERVAKTLGKG-------- 73 (664)
T ss_pred HHHHHHhC--CCCCEEEEecCCCCHHHHHHHHHHHHHHhc-CCCHHHeEEEeccHHHHHHHHHHHHHHhCcc--------
Confidence 44454443 456789999999999988887776654321 2234578888899999999999998766421
Q ss_pred eeeccccCCCcEEEEEccHHHHHHHhcCC--CCC-CccEEEEeCCCc
Q 001817 382 VRLEGMKGRDTRLMFCTTGILLRRLLVDR--SLR-GVTHVIVDEIHE 425 (1009)
Q Consensus 382 vr~e~~~~~~t~Iiv~T~g~Ll~~L~~~~--~l~-~is~IIIDEaHe 425 (1009)
...++.|.|-..|...+.... .+. .-..-|+||...
T Consensus 74 --------~~~~v~v~TfHs~a~~il~~~~~~~g~~~~~~il~~~~~ 112 (664)
T TIGR01074 74 --------EARGLTISTFHTLGLDIIKREYNALGYKSNFSLFDETDQ 112 (664)
T ss_pred --------ccCCeEEEeHHHHHHHHHHHHHHHhCCCCCCEEeCHHHH
Confidence 123577888776655444321 000 112346787763
No 365
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=90.28 E-value=1.3 Score=61.67 Aligned_cols=123 Identities=19% Similarity=0.162 Sum_probs=69.8
Q ss_pred CCHHHHHHHHHHHHc--CCeEEEEecCCCchhhhHH---HHHHHHHHHHhcCCceEEEechhHHHHHHHHHHHHHHHhCC
Q 001817 298 PSYKERDALLKAISE--NQVVVVSGETGCGKTTQLP---QYILESETEAARGAACSIICTQPRRISAMAVSERVAAERGE 372 (1009)
Q Consensus 298 Pi~~~q~~il~~l~~--~~~vII~apTGSGKTt~~~---~~ile~~~~~~~~~~~~IvvtqPrR~La~qva~rva~e~~~ 372 (1009)
.....|.+.+..+.. ++.++|.|..|+||||.+- ..+.+.+ . ..+..|+.++||-.+|..+.+ .|.
T Consensus 1019 ~Lt~~Q~~Ai~~il~~~~~~~~i~G~AGtGKTt~l~~~~~~i~~~~-~---~~g~~v~glApT~~Aa~~L~~-----~g~ 1089 (1960)
T TIGR02760 1019 RLTHGQKQAIHLIISTKDRFVAVQGLAGVGKTTMLESRYKPVLQAF-E---SEQLQVIGLAPTHEAVGELKS-----AGV 1089 (1960)
T ss_pred CCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHhHHHHHHHHHHHH-H---hcCCeEEEEeChHHHHHHHHh-----cCC
Confidence 344445555555443 5788999999999998773 2333322 2 234578878899887776642 121
Q ss_pred cccceeeeeeeeccccCCCcEEEEEccHHHHHH---HhcCCCCCCccEEEEeCCCcCCCcchHHHHHHHHHcccCCCCcE
Q 001817 373 KLGESVGYKVRLEGMKGRDTRLMFCTTGILLRR---LLVDRSLRGVTHVIVDEIHERGMNEDFLLIVLKELLPRRPELRL 449 (1009)
Q Consensus 373 ~~g~~vGy~vr~e~~~~~~t~Iiv~T~g~Ll~~---L~~~~~l~~is~IIIDEaHeR~~~~d~ll~llk~ll~~~~~lkv 449 (1009)
.. .|-..++.. ....+.+...++|||||+=. +.+..+..+++.+. .++.|+
T Consensus 1090 ~a----------------------~Ti~s~l~~~~~~~~~~~~~~~~v~ivDEasM--v~~~~~~~l~~~~~--~~~ak~ 1143 (1960)
T TIGR02760 1090 QA----------------------QTLDSFLTDISLYRNSGGDFRNTLFILDESSM--VSNFQLTHATELVQ--KSGSRA 1143 (1960)
T ss_pred ch----------------------HhHHHHhcCcccccccCCCCcccEEEEEcccc--ccHHHHHHHHHhcc--CCCCEE
Confidence 10 011111110 01112345668999999985 66665555555443 245677
Q ss_pred EEeccC
Q 001817 450 ILMSAT 455 (1009)
Q Consensus 450 IlmSAT 455 (1009)
|++-=+
T Consensus 1144 vlvGD~ 1149 (1960)
T TIGR02760 1144 VSLGDI 1149 (1960)
T ss_pred EEeCCh
Confidence 776533
No 366
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=90.22 E-value=0.2 Score=42.26 Aligned_cols=18 Identities=39% Similarity=0.752 Sum_probs=15.7
Q ss_pred CCeEEEEecCCCchhhhH
Q 001817 313 NQVVVVSGETGCGKTTQL 330 (1009)
Q Consensus 313 ~~~vII~apTGSGKTt~~ 330 (1009)
+.+++|.|++||||||.+
T Consensus 23 g~~tli~G~nGsGKSTll 40 (62)
T PF13555_consen 23 GDVTLITGPNGSGKSTLL 40 (62)
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 458999999999999765
No 367
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=90.18 E-value=1.4 Score=45.72 Aligned_cols=118 Identities=19% Similarity=0.260 Sum_probs=63.0
Q ss_pred CCeEEEEecCCCchhhhHHHHHHHHHHHHhcCCceEEEechhHHHHHHHHHHHHHHHhCCcccceeeeeeeeccccCCCc
Q 001817 313 NQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERGEKLGESVGYKVRLEGMKGRDT 392 (1009)
Q Consensus 313 ~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~IvvtqPrR~La~qva~rva~e~~~~~g~~vGy~vr~e~~~~~~t 392 (1009)
++..+++||-.||||+-+++-+..... .+.++++.-|. +-.|... ..+....| ....
T Consensus 4 g~l~~i~gpM~SGKT~eLl~r~~~~~~-----~g~~v~vfkp~------iD~R~~~---~~V~Sr~G---------~~~~ 60 (201)
T COG1435 4 GWLEFIYGPMFSGKTEELLRRARRYKE-----AGMKVLVFKPA------IDTRYGV---GKVSSRIG---------LSSE 60 (201)
T ss_pred EEEEEEEccCcCcchHHHHHHHHHHHH-----cCCeEEEEecc------ccccccc---ceeeeccC---------Cccc
Confidence 466789999999999977666654332 22345543342 1111100 00111111 1122
Q ss_pred EEEEEccHHHHHHHhcCCCCCCccEEEEeCCCcCCCcchHHHHHHHHHcccCCCCcEEEeccCCCHH
Q 001817 393 RLMFCTTGILLRRLLVDRSLRGVTHVIVDEIHERGMNEDFLLIVLKELLPRRPELRLILMSATLNAE 459 (1009)
Q Consensus 393 ~Iiv~T~g~Ll~~L~~~~~l~~is~IIIDEaHeR~~~~d~ll~llk~ll~~~~~lkvIlmSATl~~~ 459 (1009)
-++|-.+.-+...+........+++|.||||+- ..+-+...+.++... +-+-.|-+.++.+
T Consensus 61 A~~i~~~~~i~~~i~~~~~~~~~~~v~IDEaQF---~~~~~v~~l~~lad~---lgi~Vi~~GL~~D 121 (201)
T COG1435 61 AVVIPSDTDIFDEIAALHEKPPVDCVLIDEAQF---FDEELVYVLNELADR---LGIPVICYGLDTD 121 (201)
T ss_pred ceecCChHHHHHHHHhcccCCCcCEEEEehhHh---CCHHHHHHHHHHHhh---cCCEEEEeccccc
Confidence 345556666777776554444489999999993 333344445555432 1244555666655
No 368
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=90.12 E-value=0.82 Score=57.42 Aligned_cols=21 Identities=29% Similarity=0.371 Sum_probs=17.1
Q ss_pred CeEEEEecCCCchhhhHHHHH
Q 001817 314 QVVVVSGETGCGKTTQLPQYI 334 (1009)
Q Consensus 314 ~~vII~apTGSGKTt~~~~~i 334 (1009)
..+++.||+|+||||.+-...
T Consensus 53 ~slLL~GPpGtGKTTLA~aIA 73 (725)
T PRK13341 53 GSLILYGPPGVGKTTLARIIA 73 (725)
T ss_pred ceEEEECCCCCCHHHHHHHHH
Confidence 478999999999998775443
No 369
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=90.07 E-value=2 Score=55.39 Aligned_cols=48 Identities=23% Similarity=0.468 Sum_probs=28.8
Q ss_pred ccEEEEeCCCcCCCcchHHHHHHHHHcccC--------CCCc--EEEeccCCCHHHHHhh
Q 001817 415 VTHVIVDEIHERGMNEDFLLIVLKELLPRR--------PELR--LILMSATLNAELFSSY 464 (1009)
Q Consensus 415 is~IIIDEaHeR~~~~d~ll~llk~ll~~~--------~~lk--vIlmSATl~~~~~~~y 464 (1009)
+++|++||++. .+.+....++..+-..+ -+.+ +|+||..+..+.+.+.
T Consensus 668 ~~vlllDeiek--a~~~v~~~Ll~~l~~g~l~d~~g~~vd~rn~iiI~TSn~g~~~~~~~ 725 (852)
T TIGR03346 668 YSVVLFDEVEK--AHPDVFNVLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGSQFIQEL 725 (852)
T ss_pred CcEEEEecccc--CCHHHHHHHHHHHhcCceecCCCeEEecCCcEEEEeCCcchHhHhhh
Confidence 47999999996 66666555555442210 1222 6667777766655443
No 370
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=90.06 E-value=0.51 Score=50.57 Aligned_cols=40 Identities=28% Similarity=0.425 Sum_probs=29.2
Q ss_pred HcCCeEEEEecCCCchhhhHHHHHHHHHHHHhcCCceEEEec
Q 001817 311 SENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICT 352 (1009)
Q Consensus 311 ~~~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~Ivvt 352 (1009)
-.+..++|.|++|||||+.+.|++.+.+... +..+..+.+
T Consensus 17 p~gs~~li~G~~GsGKT~l~~q~l~~~~~~~--ge~vlyvs~ 56 (226)
T PF06745_consen 17 PKGSVVLISGPPGSGKTTLALQFLYNGLKNF--GEKVLYVSF 56 (226)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHHHHHH--T--EEEEES
T ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHhhhhc--CCcEEEEEe
Confidence 3578999999999999999999998876431 344444443
No 371
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=89.97 E-value=0.37 Score=56.76 Aligned_cols=33 Identities=33% Similarity=0.555 Sum_probs=22.9
Q ss_pred HHHHHHHHHHc-CCeEEEEecCCCchhhhHHHHH
Q 001817 302 ERDALLKAISE-NQVVVVSGETGCGKTTQLPQYI 334 (1009)
Q Consensus 302 ~q~~il~~l~~-~~~vII~apTGSGKTt~~~~~i 334 (1009)
++..+...+.. +.-++++|||||||||..-.++
T Consensus 246 ~~~~~~~~~~~p~GliLvTGPTGSGKTTTLY~~L 279 (500)
T COG2804 246 QLARLLRLLNRPQGLILVTGPTGSGKTTTLYAAL 279 (500)
T ss_pred HHHHHHHHHhCCCeEEEEeCCCCCCHHHHHHHHH
Confidence 34455555544 5678899999999997665444
No 372
>TIGR01075 uvrD DNA helicase II. Designed to identify uvrD members of the uvrD/rep subfamily.
Probab=89.94 E-value=0.47 Score=59.99 Aligned_cols=86 Identities=21% Similarity=0.187 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHcCCeEEEEecCCCchhhhHHHHHHHHHHHHhcCCceEEEechhHHHHHHHHHHHHHHHhCCcccceeee
Q 001817 301 KERDALLKAISENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERGEKLGESVGY 380 (1009)
Q Consensus 301 ~~q~~il~~l~~~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~IvvtqPrR~La~qva~rva~e~~~~~g~~vGy 380 (1009)
.+|.+++.. .+..++|.|..|||||+.+..-+...+ ....-....|+++..|+-+|.++.+|+.+..+..
T Consensus 7 ~~Q~~av~~--~~g~~lV~AgaGSGKT~~L~~Ria~Li-~~~~v~p~~IL~lTFTnkAA~em~~Rl~~~~~~~------- 76 (715)
T TIGR01075 7 DKQREAVAA--PPGNLLVLAGAGSGKTRVLTHRIAWLL-SVENASPHSIMAVTFTNKAAAEMRHRIGALLGTS------- 76 (715)
T ss_pred HHHHHHHcC--CCCCEEEEecCCCCHHHHHHHHHHHHH-HcCCCCHHHeEeeeccHHHHHHHHHHHHHHhccc-------
Confidence 344554443 356788999999999988776655433 2222234578988999999999999998765421
Q ss_pred eeeeccccCCCcEEEEEccHHHHHHH
Q 001817 381 KVRLEGMKGRDTRLMFCTTGILLRRL 406 (1009)
Q Consensus 381 ~vr~e~~~~~~t~Iiv~T~g~Ll~~L 406 (1009)
...+.|+|-..+...+
T Consensus 77 ----------~~~~~i~TfHs~~~~i 92 (715)
T TIGR01075 77 ----------ARGMWIGTFHGLAHRL 92 (715)
T ss_pred ----------ccCcEEEcHHHHHHHH
Confidence 1246788876554433
No 373
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=89.93 E-value=1.8 Score=49.02 Aligned_cols=52 Identities=21% Similarity=0.246 Sum_probs=35.3
Q ss_pred HHHHHhcCCCCCCccEEEEeCCCcCCCcchHHHHHHHHHcccCCCCcEEEeccC
Q 001817 402 LLRRLLVDRSLRGVTHVIVDEIHERGMNEDFLLIVLKELLPRRPELRLILMSAT 455 (1009)
Q Consensus 402 Ll~~L~~~~~l~~is~IIIDEaHeR~~~~d~ll~llk~ll~~~~~lkvIlmSAT 455 (1009)
+.+.+...+...+++++|||+||. ++....-++||.+-.-.++.-+|+.|..
T Consensus 96 l~~~~~~~~~~~~~kV~iI~~ae~--m~~~AaNaLLKtLEEPp~~t~fiL~t~~ 147 (319)
T PRK06090 96 CNRLAQESSQLNGYRLFVIEPADA--MNESASNALLKTLEEPAPNCLFLLVTHN 147 (319)
T ss_pred HHHHHhhCcccCCceEEEecchhh--hCHHHHHHHHHHhcCCCCCeEEEEEECC
Confidence 344444455678899999999997 6666777778777654445555555544
No 374
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=89.90 E-value=0.35 Score=54.65 Aligned_cols=26 Identities=46% Similarity=0.630 Sum_probs=21.3
Q ss_pred HHHHHHcCCeEEEEecCCCchhhhHH
Q 001817 306 LLKAISENQVVVVSGETGCGKTTQLP 331 (1009)
Q Consensus 306 il~~l~~~~~vII~apTGSGKTt~~~ 331 (1009)
+--++..+.+++|+|+|||||||.+-
T Consensus 137 l~~~v~~~~~ili~G~tGsGKTTll~ 162 (308)
T TIGR02788 137 LRLAIASRKNIIISGGTGSGKTTFLK 162 (308)
T ss_pred HHHHhhCCCEEEEECCCCCCHHHHHH
Confidence 34456788999999999999998764
No 375
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=89.87 E-value=1.6 Score=55.33 Aligned_cols=36 Identities=28% Similarity=0.412 Sum_probs=24.2
Q ss_pred CCHHHHHHHHHHHH-----cCCeEEEEecCCCchhhhHHHH
Q 001817 298 PSYKERDALLKAIS-----ENQVVVVSGETGCGKTTQLPQY 333 (1009)
Q Consensus 298 Pi~~~q~~il~~l~-----~~~~vII~apTGSGKTt~~~~~ 333 (1009)
|+.-+..++-..+. ...++|+.||+|+|||+.+-..
T Consensus 183 ~~igr~~ei~~~~~~L~~~~~~n~lL~G~pG~GKT~l~~~l 223 (731)
T TIGR02639 183 PLIGREDELERTIQVLCRRKKNNPLLVGEPGVGKTAIAEGL 223 (731)
T ss_pred cccCcHHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHH
Confidence 66555555444443 3568999999999999665433
No 376
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=89.83 E-value=0.71 Score=54.98 Aligned_cols=31 Identities=32% Similarity=0.358 Sum_probs=21.8
Q ss_pred HHHHHHHcC---CeEEEEecCCCchhhhHHHHHH
Q 001817 305 ALLKAISEN---QVVVVSGETGCGKTTQLPQYIL 335 (1009)
Q Consensus 305 ~il~~l~~~---~~vII~apTGSGKTt~~~~~il 335 (1009)
.+..++..+ +..++.||.|+|||+.+-.+.-
T Consensus 28 ~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A~~lAk 61 (451)
T PRK06305 28 VLKNALRFNRAAHAYLFSGIRGTGKTTLARIFAK 61 (451)
T ss_pred HHHHHHHcCCCceEEEEEcCCCCCHHHHHHHHHH
Confidence 344455554 3578999999999988765543
No 377
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=89.81 E-value=8.6 Score=43.27 Aligned_cols=129 Identities=19% Similarity=0.259 Sum_probs=68.8
Q ss_pred cCCeEEEEecCCCchhhhHHHHHHHHHHHHhcCCceEEEec----hhHHHHHHHHHHHHHHHhCCcccceeeeeeeeccc
Q 001817 312 ENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICT----QPRRISAMAVSERVAAERGEKLGESVGYKVRLEGM 387 (1009)
Q Consensus 312 ~~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~Ivvt----qPrR~La~qva~rva~e~~~~~g~~vGy~vr~e~~ 387 (1009)
+.+.+++.||-|||||+.+--.+.+ ..+ .+....++=+ +--+.+...++..++.+.... +...| +.
T Consensus 48 EsnsviiigprgsgkT~li~~~Ls~-~q~--~~E~~l~v~Lng~~~~dk~al~~I~rql~~e~~~~-~k~~g------sf 117 (408)
T KOG2228|consen 48 ESNSVIIIGPRGSGKTILIDTRLSD-IQE--NGENFLLVRLNGELQTDKIALKGITRQLALELNRI-VKSFG------SF 117 (408)
T ss_pred CCCceEEEccCCCCceEeeHHHHhh-HHh--cCCeEEEEEECccchhhHHHHHHHHHHHHHHHhhh-heeec------cc
Confidence 5678999999999999766555544 211 2222222222 224445555666665554321 22222 00
Q ss_pred cCCCcEEEEEccHHHHHHHhcCCCCCCc-cEEEEeCCCcCC--CcchHHHHHHHHHcccCCCCcEEEeccCCCH
Q 001817 388 KGRDTRLMFCTTGILLRRLLVDRSLRGV-THVIVDEIHERG--MNEDFLLIVLKELLPRRPELRLILMSATLNA 458 (1009)
Q Consensus 388 ~~~~t~Iiv~T~g~Ll~~L~~~~~l~~i-s~IIIDEaHeR~--~~~d~ll~llk~ll~~~~~lkvIlmSATl~~ 458 (1009)
. + +-..|+..|..+..-... =.+|+||++--. .+.-.+..++......+.++-+|++|-.+|.
T Consensus 118 t-e-------~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~Ttrld~ 183 (408)
T KOG2228|consen 118 T-E-------NLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVTTRLDI 183 (408)
T ss_pred c-h-------hHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEeeccccH
Confidence 0 0 113455555554433344 356888988311 2223444455555555667778999988864
No 378
>PF03237 Terminase_6: Terminase-like family; InterPro: IPR004921 The terminase is a component of the molecular motor that translocates genomic DNA into empty capsids during DNA packaging []. The large subunit heterodimerises with the small terminase protein, which is docked on the capsid portal protein. The latter forms a ring through which genomic DNA is translocated into the capsid. The terminase protein may have or induce an endonuclease activity to cleave DNA after encapsidation. This entry represents a family of terminase large subunits found in a variety of the Caudovirales and prophage regions of bacterial genomes. Homologues are also found in Gene Transfer Agents (GTA) [], including ORFg2 (RCAP_rcc01683) of the GTA of Rhodobacter capsulatus (Rhodopseudomonas capsulata) [see Fig.1, in ].; PDB: 2O0K_A 3CPE_A 2O0J_A 2O0H_A 3C6H_A 3C6A_A.
Probab=89.68 E-value=2.4 Score=48.40 Aligned_cols=130 Identities=15% Similarity=0.132 Sum_probs=56.4
Q ss_pred EEEecCCCchhhhHHHHHHHHHHHHhcCCceEEEechhHHHHHHHHHH---HHHHHhCCcccceeeeeeeeccc--cCCC
Q 001817 317 VVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSE---RVAAERGEKLGESVGYKVRLEGM--KGRD 391 (1009)
Q Consensus 317 II~apTGSGKTt~~~~~ile~~~~~~~~~~~~IvvtqPrR~La~qva~---rva~e~~~~~g~~vGy~vr~e~~--~~~~ 391 (1009)
++.++.|+|||+.....++..+.. ......++++.....+...+.. .+...... ... ..+....+.. ....
T Consensus 1 ~i~~~r~~GKT~~~~~~~~~~~~~--~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~nG 76 (384)
T PF03237_consen 1 LINGGRGSGKTTLIAIWFLWWALT--RPPGRRVIIASTYRQARDIFGRFWKGIIELLPS-WFE-IKFNEWNDRKIILPNG 76 (384)
T ss_dssp -EEE-SSS-HHHHHHHHHHHHHHS--SSS--EEEEEESSHHHHHHHHHHHHHHHHTS-T-TTS---EEEE-SSEEEETTS
T ss_pred CCcCCccccHHHHHHHHHHHHHhh--CCCCcEEEEecCHHHHHHHHHHhHHHHHHHHHH-hcC-cccccCCCCcEEecCc
Confidence 578999999999988877776653 2223455655445555554333 22111122 111 1111111111 1234
Q ss_pred cEEEEEccHH--HHHHHhcCCCCCCccEEEEeCCCcCCCcchHHHHHHHHHcccCCCCcEEEeccCC
Q 001817 392 TRLMFCTTGI--LLRRLLVDRSLRGVTHVIVDEIHERGMNEDFLLIVLKELLPRRPELRLILMSATL 456 (1009)
Q Consensus 392 t~Iiv~T~g~--Ll~~L~~~~~l~~is~IIIDEaHeR~~~~d~ll~llk~ll~~~~~lkvIlmSATl 456 (1009)
..|.+.+.+. -...+.. ..+++||+||+-. +..+.....+............+..|-|.
T Consensus 77 ~~i~~~~~~~~~~~~~~~G----~~~~~i~iDE~~~--~~~~~~~~~~~~~~~~~~~~~~~~~s~p~ 137 (384)
T PF03237_consen 77 SRIQFRGADSPDSGDNIRG----FEYDLIIIDEAAK--VPDDAFSELIRRLRATWGGSIRMYISTPP 137 (384)
T ss_dssp -EEEEES-----SHHHHHT----S--SEEEEESGGG--STTHHHHHHHHHHHHCSTT--EEEEEE--
T ss_pred eEEEEeccccccccccccc----cccceeeeeeccc--CchHHHHHHHHhhhhcccCcceEEeecCC
Confidence 5566666432 1122322 5778999999764 33444444454544443333333555555
No 379
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=89.67 E-value=0.42 Score=51.10 Aligned_cols=29 Identities=31% Similarity=0.454 Sum_probs=24.0
Q ss_pred HHcCCeEEEEecCCCchhhhHHHHHHHHH
Q 001817 310 ISENQVVVVSGETGCGKTTQLPQYILESE 338 (1009)
Q Consensus 310 l~~~~~vII~apTGSGKTt~~~~~ile~~ 338 (1009)
+..++.+.|.|++|||||+.+.+++....
T Consensus 16 ~~~g~v~~I~G~~GsGKT~l~~~ia~~~~ 44 (226)
T cd01393 16 IPTGRITEIFGEFGSGKTQLCLQLAVEAQ 44 (226)
T ss_pred CcCCcEEEEeCCCCCChhHHHHHHHHHhh
Confidence 44588999999999999988888776643
No 380
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=89.66 E-value=0.61 Score=53.27 Aligned_cols=54 Identities=15% Similarity=0.124 Sum_probs=36.4
Q ss_pred HHHHHHHhcCCCCCCccEEEEeCCCcCCCcchHHHHHHHHHcccCCCCcEEEeccC
Q 001817 400 GILLRRLLVDRSLRGVTHVIVDEIHERGMNEDFLLIVLKELLPRRPELRLILMSAT 455 (1009)
Q Consensus 400 g~Ll~~L~~~~~l~~is~IIIDEaHeR~~~~d~ll~llk~ll~~~~~lkvIlmSAT 455 (1009)
-.+.+.+...+....++++|||+||. ++..-.-++||.+-.-.++.-+|+.|.-
T Consensus 94 R~l~~~~~~~~~~g~~kV~iI~~ae~--m~~~AaNaLLKtLEEPp~~t~fiL~t~~ 147 (334)
T PRK07993 94 REVTEKLYEHARLGGAKVVWLPDAAL--LTDAAANALLKTLEEPPENTWFFLACRE 147 (334)
T ss_pred HHHHHHHhhccccCCceEEEEcchHh--hCHHHHHHHHHHhcCCCCCeEEEEEECC
Confidence 34555555566778999999999997 6766777777777553334444554443
No 381
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=89.46 E-value=0.66 Score=53.02 Aligned_cols=60 Identities=22% Similarity=0.160 Sum_probs=39.8
Q ss_pred EEEEccHHHHHHHhcCCCCCCccEEEEeCCCcCCCcchHHHHHHHHHcccCCCCcEEEeccC
Q 001817 394 LMFCTTGILLRRLLVDRSLRGVTHVIVDEIHERGMNEDFLLIVLKELLPRRPELRLILMSAT 455 (1009)
Q Consensus 394 Iiv~T~g~Ll~~L~~~~~l~~is~IIIDEaHeR~~~~d~ll~llk~ll~~~~~lkvIlmSAT 455 (1009)
|.|-..-.+.+.+...+....++++|||+||. ++..-.-.+||.+-.-.++..+|+.|..
T Consensus 112 I~idqiR~l~~~~~~~~~~~~~kV~iI~~ae~--m~~~AaNaLLKtLEEPp~~t~fiL~t~~ 171 (342)
T PRK06964 112 IKIEQVRALLDFCGVGTHRGGARVVVLYPAEA--LNVAAANALLKTLEEPPPGTVFLLVSAR 171 (342)
T ss_pred cCHHHHHHHHHHhccCCccCCceEEEEechhh--cCHHHHHHHHHHhcCCCcCcEEEEEECC
Confidence 33333344555565566778899999999997 6777777778877654445555555544
No 382
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=89.40 E-value=0.58 Score=54.08 Aligned_cols=41 Identities=24% Similarity=0.293 Sum_probs=26.2
Q ss_pred HcCCeEEEEecCCCchhhhHHHHHHHHHHHHhcCCceEEEechh
Q 001817 311 SENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQP 354 (1009)
Q Consensus 311 ~~~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~IvvtqP 354 (1009)
..+..++|+|||||||||.+- .+++.+.. .....+|+.+..
T Consensus 147 ~~~GlilI~G~TGSGKTT~l~-al~~~i~~--~~~~~~IvtiEd 187 (372)
T TIGR02525 147 PAAGLGLICGETGSGKSTLAA-SIYQHCGE--TYPDRKIVTYED 187 (372)
T ss_pred hcCCEEEEECCCCCCHHHHHH-HHHHHHHh--cCCCceEEEEec
Confidence 456788999999999997763 44444432 112346666543
No 383
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=89.38 E-value=1.2 Score=50.07 Aligned_cols=20 Identities=30% Similarity=0.368 Sum_probs=16.2
Q ss_pred CeEEEEecCCCchhhhHHHH
Q 001817 314 QVVVVSGETGCGKTTQLPQY 333 (1009)
Q Consensus 314 ~~vII~apTGSGKTt~~~~~ 333 (1009)
+.+++.||+|+|||+.+-.+
T Consensus 31 ~~~ll~Gp~G~GKT~la~~i 50 (305)
T TIGR00635 31 DHLLLYGPPGLGKTTLAHII 50 (305)
T ss_pred CeEEEECCCCCCHHHHHHHH
Confidence 56899999999999666543
No 384
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=89.35 E-value=0.46 Score=52.42 Aligned_cols=30 Identities=33% Similarity=0.556 Sum_probs=21.7
Q ss_pred HHHHHHHHHc-CCeEEEEecCCCchhhhHHH
Q 001817 303 RDALLKAISE-NQVVVVSGETGCGKTTQLPQ 332 (1009)
Q Consensus 303 q~~il~~l~~-~~~vII~apTGSGKTt~~~~ 332 (1009)
.+.+..++.. +..++|+|+|||||||.+-.
T Consensus 69 ~~~l~~~~~~~~GlilisG~tGSGKTT~l~a 99 (264)
T cd01129 69 LEIFRKLLEKPHGIILVTGPTGSGKTTTLYS 99 (264)
T ss_pred HHHHHHHHhcCCCEEEEECCCCCcHHHHHHH
Confidence 3445555543 56799999999999987744
No 385
>PTZ00293 thymidine kinase; Provisional
Probab=89.31 E-value=1.5 Score=46.50 Aligned_cols=27 Identities=26% Similarity=0.324 Sum_probs=21.6
Q ss_pred cCCeEEEEecCCCchhhhHHHHHHHHH
Q 001817 312 ENQVVVVSGETGCGKTTQLPQYILESE 338 (1009)
Q Consensus 312 ~~~~vII~apTGSGKTt~~~~~ile~~ 338 (1009)
.|...++.||-+||||+.+...+....
T Consensus 3 ~G~i~vi~GpMfSGKTteLLr~i~~y~ 29 (211)
T PTZ00293 3 RGTISVIIGPMFSGKTTELMRLVKRFT 29 (211)
T ss_pred ceEEEEEECCCCChHHHHHHHHHHHHH
Confidence 466789999999999998888765543
No 386
>PHA00729 NTP-binding motif containing protein
Probab=89.25 E-value=0.68 Score=49.54 Aligned_cols=21 Identities=33% Similarity=0.398 Sum_probs=17.1
Q ss_pred CeEEEEecCCCchhhhHHHHH
Q 001817 314 QVVVVSGETGCGKTTQLPQYI 334 (1009)
Q Consensus 314 ~~vII~apTGSGKTt~~~~~i 334 (1009)
.+++|.|++|+|||+.+....
T Consensus 18 ~nIlItG~pGvGKT~LA~aLa 38 (226)
T PHA00729 18 VSAVIFGKQGSGKTTYALKVA 38 (226)
T ss_pred EEEEEECCCCCCHHHHHHHHH
Confidence 379999999999997775443
No 387
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=89.21 E-value=1.4 Score=49.95 Aligned_cols=46 Identities=15% Similarity=0.096 Sum_probs=28.8
Q ss_pred HhcCCCCCCccEEEEeCCCcCCCcchHHHHHHHHHcccCCCCcEEEec
Q 001817 406 LLVDRSLRGVTHVIVDEIHERGMNEDFLLIVLKELLPRRPELRLILMS 453 (1009)
Q Consensus 406 L~~~~~l~~is~IIIDEaHeR~~~~d~ll~llk~ll~~~~~lkvIlmS 453 (1009)
+...|...+.+++||||+|. ++.+-.-.+++.+-.-.++..+|+.+
T Consensus 85 ~~~~p~~~~~kv~iI~~ad~--m~~~a~naLLK~LEepp~~t~~il~~ 130 (313)
T PRK05564 85 VNKKPYEGDKKVIIIYNSEK--MTEQAQNAFLKTIEEPPKGVFIILLC 130 (313)
T ss_pred HhcCcccCCceEEEEechhh--cCHHHHHHHHHHhcCCCCCeEEEEEe
Confidence 33456778899999999997 45555556666554433344444433
No 388
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=89.07 E-value=1.2 Score=50.77 Aligned_cols=21 Identities=33% Similarity=0.332 Sum_probs=16.9
Q ss_pred CCeEEEEecCCCchhhhHHHH
Q 001817 313 NQVVVVSGETGCGKTTQLPQY 333 (1009)
Q Consensus 313 ~~~vII~apTGSGKTt~~~~~ 333 (1009)
.+.+++.||+|+|||+.+-.+
T Consensus 51 ~~~~ll~GppG~GKT~la~~i 71 (328)
T PRK00080 51 LDHVLLYGPPGLGKTTLANII 71 (328)
T ss_pred CCcEEEECCCCccHHHHHHHH
Confidence 357899999999999776543
No 389
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=88.94 E-value=1.6 Score=43.95 Aligned_cols=32 Identities=22% Similarity=0.310 Sum_probs=21.8
Q ss_pred CCCccEEEEeCCCcCCCcchHHHHHHHHHccc
Q 001817 412 LRGVTHVIVDEIHERGMNEDFLLIVLKELLPR 443 (1009)
Q Consensus 412 l~~is~IIIDEaHeR~~~~d~ll~llk~ll~~ 443 (1009)
+..-++|||||+--+-+.+.-+...+..++..
T Consensus 98 ~~~aDvIIIDEIGpMElks~~f~~~ve~vl~~ 129 (179)
T COG1618 98 LEEADVIIIDEIGPMELKSKKFREAVEEVLKS 129 (179)
T ss_pred hhcCCEEEEecccchhhccHHHHHHHHHHhcC
Confidence 44578999999995445555555666666653
No 390
>PRK04841 transcriptional regulator MalT; Provisional
Probab=88.90 E-value=1.1 Score=58.35 Aligned_cols=34 Identities=35% Similarity=0.567 Sum_probs=26.2
Q ss_pred HHHHHHHHHH---cCCeEEEEecCCCchhhhHHHHHH
Q 001817 302 ERDALLKAIS---ENQVVVVSGETGCGKTTQLPQYIL 335 (1009)
Q Consensus 302 ~q~~il~~l~---~~~~vII~apTGSGKTt~~~~~il 335 (1009)
.+..+++.+. ..+.++|+||.|.||||.+.+++-
T Consensus 18 ~R~rl~~~l~~~~~~~~~~v~apaG~GKTtl~~~~~~ 54 (903)
T PRK04841 18 VRERLLAKLSGANNYRLVLVTSPAGYGKTTLISQWAA 54 (903)
T ss_pred cchHHHHHHhcccCCCeEEEECCCCCCHHHHHHHHHH
Confidence 3455555554 457899999999999999998873
No 391
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=88.74 E-value=1.7 Score=46.94 Aligned_cols=59 Identities=27% Similarity=0.417 Sum_probs=34.2
Q ss_pred HHHHHHcCC-eEEEEecCCCchhhhHHHHHHHHHHHHhcCCceEEEechhHHHHHHHHHHHHHHH
Q 001817 306 LLKAISENQ-VVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAE 369 (1009)
Q Consensus 306 il~~l~~~~-~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~IvvtqPrR~La~qva~rva~e 369 (1009)
+-..+..++ .+.++|+-|||||+..- .+++.. .++..+.|++-.|+-. ...+.+++...
T Consensus 43 l~~~i~d~qg~~~vtGevGsGKTv~~R-al~~s~---~~d~~~~v~i~~~~~s-~~~~~~ai~~~ 102 (269)
T COG3267 43 LHAAIADGQGILAVTGEVGSGKTVLRR-ALLASL---NEDQVAVVVIDKPTLS-DATLLEAIVAD 102 (269)
T ss_pred HHHHHhcCCceEEEEecCCCchhHHHH-HHHHhc---CCCceEEEEecCcchh-HHHHHHHHHHH
Confidence 344566777 89999999999996655 444432 1333344444444433 34445555443
No 392
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=88.67 E-value=0.34 Score=46.14 Aligned_cols=19 Identities=37% Similarity=0.700 Sum_probs=15.7
Q ss_pred eEEEEecCCCchhhhHHHH
Q 001817 315 VVVVSGETGCGKTTQLPQY 333 (1009)
Q Consensus 315 ~vII~apTGSGKTt~~~~~ 333 (1009)
+++|+|++||||||.+-..
T Consensus 1 vI~I~G~~gsGKST~a~~L 19 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKEL 19 (121)
T ss_dssp EEEEEESTTSSHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHH
Confidence 4789999999999776543
No 393
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=88.55 E-value=0.87 Score=54.81 Aligned_cols=51 Identities=14% Similarity=0.283 Sum_probs=35.4
Q ss_pred HHcCCeEEEEecCCCchhhhHHHHHHHHHHHHhcCCceEEEechhHHHHHHHHHHHH
Q 001817 310 ISENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERV 366 (1009)
Q Consensus 310 l~~~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~IvvtqPrR~La~qva~rv 366 (1009)
+..+..++|.||+|+|||+.+.|++.+.+. ++..+..+- .-+...|+.++.
T Consensus 260 ~~~gs~~li~G~~G~GKt~l~~~f~~~~~~---~ge~~~y~s---~eEs~~~i~~~~ 310 (484)
T TIGR02655 260 FFKDSIILATGATGTGKTLLVSKFLENACA---NKERAILFA---YEESRAQLLRNA 310 (484)
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHHH---CCCeEEEEE---eeCCHHHHHHHH
Confidence 446789999999999999999999887542 333343333 334455666665
No 394
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=88.53 E-value=4.1 Score=47.31 Aligned_cols=134 Identities=19% Similarity=0.261 Sum_probs=82.7
Q ss_pred CeEEEEecCCCchhhhHHHHHHHHHHHHhcCCceEEEechhHHHHHHHHHHHHHHHhCCcccceeeeeeeeccccCCCcE
Q 001817 314 QVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERGEKLGESVGYKVRLEGMKGRDTR 393 (1009)
Q Consensus 314 ~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~IvvtqPrR~La~qva~rva~e~~~~~g~~vGy~vr~e~~~~~~t~ 393 (1009)
.+++.+|=-||||||.+.-.... +.. ++..+.++++=..|.+|...-+.+++..+..+-.. + . ....
T Consensus 101 ~vImmvGLQGsGKTTt~~KLA~~--lkk-~~~kvllVaaD~~RpAA~eQL~~La~q~~v~~f~~-~--------~-~~~P 167 (451)
T COG0541 101 TVILMVGLQGSGKTTTAGKLAKY--LKK-KGKKVLLVAADTYRPAAIEQLKQLAEQVGVPFFGS-G--------T-EKDP 167 (451)
T ss_pred eEEEEEeccCCChHhHHHHHHHH--HHH-cCCceEEEecccCChHHHHHHHHHHHHcCCceecC-C--------C-CCCH
Confidence 46788999999999988765543 222 56677777777889999888888877655443211 0 0 1111
Q ss_pred EEEEccHHHHHHHhcCCCCCCccEEEEeCCCcCCCcchHHHHHHHHHcccCCCCcEEEeccCC--CHHHHHhhhC
Q 001817 394 LMFCTTGILLRRLLVDRSLRGVTHVIVDEIHERGMNEDFLLIVLKELLPRRPELRLILMSATL--NAELFSSYFG 466 (1009)
Q Consensus 394 Iiv~T~g~Ll~~L~~~~~l~~is~IIIDEaHeR~~~~d~ll~llk~ll~~~~~lkvIlmSATl--~~~~~~~yf~ 466 (1009)
+-++..+ +... ....+++||||=|-...++.+++..+...--..+|+=-++.+-|++ ++...++-|+
T Consensus 168 v~Iak~a--l~~a----k~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~GQdA~~~A~aF~ 236 (451)
T COG0541 168 VEIAKAA--LEKA----KEEGYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMIGQDAVNTAKAFN 236 (451)
T ss_pred HHHHHHH--HHHH----HHcCCCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEecccchHHHHHHHHHh
Confidence 1112111 1222 3456899999999865566665555444333466777778888887 4444555554
No 395
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=88.38 E-value=0.64 Score=53.81 Aligned_cols=29 Identities=28% Similarity=0.465 Sum_probs=24.3
Q ss_pred HHcCCeEEEEecCCCchhhhHHHHHHHHH
Q 001817 310 ISENQVVVVSGETGCGKTTQLPQYILESE 338 (1009)
Q Consensus 310 l~~~~~vII~apTGSGKTt~~~~~ile~~ 338 (1009)
+..+..++|.|++|+|||+.+.+++.+..
T Consensus 79 i~~GslvLI~G~pG~GKStLllq~a~~~a 107 (372)
T cd01121 79 LVPGSVILIGGDPGIGKSTLLLQVAARLA 107 (372)
T ss_pred ccCCeEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 45678999999999999999988876543
No 396
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=88.28 E-value=2.3 Score=48.54 Aligned_cols=28 Identities=21% Similarity=0.366 Sum_probs=21.3
Q ss_pred HHHHHHHHcCCeEEEEecCCCchhhhHH
Q 001817 304 DALLKAISENQVVVVSGETGCGKTTQLP 331 (1009)
Q Consensus 304 ~~il~~l~~~~~vII~apTGSGKTt~~~ 331 (1009)
+.+..+...+..|+|.|++||||++.+-
T Consensus 13 ~~~~~~a~~~~pVLI~GE~GtGK~~lAr 40 (329)
T TIGR02974 13 EQVSRLAPLDRPVLIIGERGTGKELIAA 40 (329)
T ss_pred HHHHHHhCCCCCEEEECCCCChHHHHHH
Confidence 4455555678889999999999996553
No 397
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=88.02 E-value=1.9 Score=54.72 Aligned_cols=35 Identities=23% Similarity=0.377 Sum_probs=22.0
Q ss_pred HHHHHHHhcCCCCCCccEEEEeCCCcCCCcchHHHHHHHHH
Q 001817 400 GILLRRLLVDRSLRGVTHVIVDEIHERGMNEDFLLIVLKEL 440 (1009)
Q Consensus 400 g~Ll~~L~~~~~l~~is~IIIDEaHeR~~~~d~ll~llk~l 440 (1009)
|.|...+.. ..+++|++||+|. .+.+....+++.+
T Consensus 543 ~~l~~~~~~----~p~~VvllDEiek--a~~~~~~~Ll~~l 577 (731)
T TIGR02639 543 GLLTEAVRK----HPHCVLLLDEIEK--AHPDIYNILLQVM 577 (731)
T ss_pred hHHHHHHHh----CCCeEEEEechhh--cCHHHHHHHHHhh
Confidence 445554443 3458999999996 5666555555443
No 398
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=88.00 E-value=0.32 Score=53.44 Aligned_cols=38 Identities=26% Similarity=0.485 Sum_probs=24.4
Q ss_pred cCCeEEEEecCCCchhhhHHHHHHHHHHHHhcCCceEEEech
Q 001817 312 ENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQ 353 (1009)
Q Consensus 312 ~~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~Ivvtq 353 (1009)
.+.-++|.|||||||||...- +++.+. +.....|+-+.
T Consensus 124 ~~GLILVTGpTGSGKSTTlAa-mId~iN---~~~~~HIlTIE 161 (353)
T COG2805 124 PRGLILVTGPTGSGKSTTLAA-MIDYIN---KHKAKHILTIE 161 (353)
T ss_pred CCceEEEeCCCCCcHHHHHHH-HHHHHh---ccCCcceEEec
Confidence 466788999999999977653 444442 22334555443
No 399
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=87.97 E-value=4.9 Score=49.36 Aligned_cols=42 Identities=17% Similarity=0.223 Sum_probs=27.6
Q ss_pred EccHHHHHHHhcCCCCCCccEEEEeCCCcC--CCcchHHHHHHHHH
Q 001817 397 CTTGILLRRLLVDRSLRGVTHVIVDEIHER--GMNEDFLLIVLKEL 440 (1009)
Q Consensus 397 ~T~g~Ll~~L~~~~~l~~is~IIIDEaHeR--~~~~d~ll~llk~l 440 (1009)
+-||.+++-|..-...+ -++++||++.. +...|-.-++|.-+
T Consensus 402 amPGrIiQ~mkka~~~N--Pv~LLDEIDKm~ss~rGDPaSALLEVL 445 (782)
T COG0466 402 AMPGKIIQGMKKAGVKN--PVFLLDEIDKMGSSFRGDPASALLEVL 445 (782)
T ss_pred cCChHHHHHHHHhCCcC--CeEEeechhhccCCCCCChHHHHHhhc
Confidence 34899998887544322 36899999963 35556655555544
No 400
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=87.88 E-value=0.83 Score=49.49 Aligned_cols=51 Identities=24% Similarity=0.364 Sum_probs=34.6
Q ss_pred HHcCCeEEEEecCCCchhhhHHHHHHHHHHHHhcCCceEEEechhHHHHHHHHHHHH
Q 001817 310 ISENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERV 366 (1009)
Q Consensus 310 l~~~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~IvvtqPrR~La~qva~rv 366 (1009)
+..+..++|.|++|||||+.+.+++.+.+. ++..+..+-+ .+...++.+++
T Consensus 18 ~~~gs~~lI~G~pGsGKT~la~~~l~~~~~---~ge~~lyvs~---ee~~~~i~~~~ 68 (237)
T TIGR03877 18 IPERNVVLLSGGPGTGKSIFSQQFLWNGLQ---MGEPGIYVAL---EEHPVQVRRNM 68 (237)
T ss_pred CcCCeEEEEEcCCCCCHHHHHHHHHHHHHH---cCCcEEEEEe---eCCHHHHHHHH
Confidence 446889999999999999999999988652 2333333332 33444555554
No 401
>TIGR01073 pcrA ATP-dependent DNA helicase PcrA. Designed to identify pcrA members of the uvrD/rep subfamily.
Probab=87.82 E-value=1.3 Score=56.06 Aligned_cols=104 Identities=20% Similarity=0.221 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHcCCeEEEEecCCCchhhhHHHHHHHHHHHHhcCCceEEEechhHHHHHHHHHHHHHHHhCCcccceeee
Q 001817 301 KERDALLKAISENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERGEKLGESVGY 380 (1009)
Q Consensus 301 ~~q~~il~~l~~~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~IvvtqPrR~La~qva~rva~e~~~~~g~~vGy 380 (1009)
..|.+++.. ....++|.|..|||||+.+..-+...+.. ..-..-.|+++.-|+-+|.++.+|+.+..+.
T Consensus 7 ~~Q~~av~~--~~g~~lV~AgaGSGKT~~l~~ria~Li~~-~~i~P~~IL~lTFT~kAA~em~~Rl~~~~~~-------- 75 (726)
T TIGR01073 7 PEQREAVKT--TEGPLLIMAGAGSGKTRVLTHRIAHLIAE-KNVAPWNILAITFTNKAAREMKERVEKLLGP-------- 75 (726)
T ss_pred HHHHHHHhC--CCCCEEEEeCCCCCHHHHHHHHHHHHHHc-CCCCHHHeeeeeccHHHHHHHHHHHHHHhcc--------
Confidence 345555443 35678889999999998877666544322 1122346888889999999999999775432
Q ss_pred eeeeccccCCCcEEEEEccHHHHHHHhcCC-C-CC-CccEEEEeCCC
Q 001817 381 KVRLEGMKGRDTRLMFCTTGILLRRLLVDR-S-LR-GVTHVIVDEIH 424 (1009)
Q Consensus 381 ~vr~e~~~~~~t~Iiv~T~g~Ll~~L~~~~-~-l~-~is~IIIDEaH 424 (1009)
....+.|+|-..+...+.... . +. .-.+-|+|+..
T Consensus 76 ---------~~~~~~i~TFHs~~~~iLr~~~~~~g~~~~f~i~d~~~ 113 (726)
T TIGR01073 76 ---------VAEDIWISTFHSMCVRILRRDIDRIGINRNFSIIDPTD 113 (726)
T ss_pred ---------ccCCcEEEcHHHHHHHHHHHHHHHhCCCCCCCcCCHHH
Confidence 113467888766654443321 1 10 12234677765
No 402
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=87.74 E-value=5.8 Score=44.67 Aligned_cols=125 Identities=18% Similarity=0.218 Sum_probs=71.8
Q ss_pred CCeEEEEecCCCchhhhHHHHHHHHHHHHhcCCceEEEechhHHHHHHHHHHHHHHHhCCcccceeeeeeeeccccCCCc
Q 001817 313 NQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERGEKLGESVGYKVRLEGMKGRDT 392 (1009)
Q Consensus 313 ~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~IvvtqPrR~La~qva~rva~e~~~~~g~~vGy~vr~e~~~~~~t 392 (1009)
-.+++++|-.|+||||.+.-...... ..|..+.+.-.=--|+.|++.-+.+++..|..+-. .. .....+
T Consensus 139 p~Vil~vGVNG~GKTTTIaKLA~~l~---~~g~~VllaA~DTFRAaAiEQL~~w~er~gv~vI~-------~~-~G~DpA 207 (340)
T COG0552 139 PFVILFVGVNGVGKTTTIAKLAKYLK---QQGKSVLLAAGDTFRAAAIEQLEVWGERLGVPVIS-------GK-EGADPA 207 (340)
T ss_pred cEEEEEEecCCCchHhHHHHHHHHHH---HCCCeEEEEecchHHHHHHHHHHHHHHHhCCeEEc-------cC-CCCCcH
Confidence 35788899999999999876654322 23443333333367888888777777766554321 11 111112
Q ss_pred EEEEEccHHHHHHHhcCCCCCCccEEEEeCCCcCCCcchHHHHHHHHHcc-cCCCC------cEEEeccCCC
Q 001817 393 RLMFCTTGILLRRLLVDRSLRGVTHVIVDEIHERGMNEDFLLIVLKELLP-RRPEL------RLILMSATLN 457 (1009)
Q Consensus 393 ~Iiv~T~g~Ll~~L~~~~~l~~is~IIIDEaHeR~~~~d~ll~llk~ll~-~~~~l------kvIlmSATl~ 457 (1009)
.|+ .+-+.. ..-+++++|++|=|-. --+..-|+.-|+++.+ ..+.. .++.+=||..
T Consensus 208 aVa-------fDAi~~-Akar~~DvvliDTAGR-Lhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttG 270 (340)
T COG0552 208 AVA-------FDAIQA-AKARGIDVVLIDTAGR-LHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDATTG 270 (340)
T ss_pred HHH-------HHHHHH-HHHcCCCEEEEeCccc-ccCchhHHHHHHHHHHHhccccCCCCceEEEEEEcccC
Confidence 222 222221 1356899999999994 3344445555555543 22222 4556689983
No 403
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=87.74 E-value=0.38 Score=50.60 Aligned_cols=36 Identities=28% Similarity=0.517 Sum_probs=22.6
Q ss_pred CeEEEEecCCCchhhhHHHHHHHHHHHHhcCCceEEEech
Q 001817 314 QVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQ 353 (1009)
Q Consensus 314 ~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~Ivvtq 353 (1009)
..++|+|||||||||.+-. ++..+.. .....|+++.
T Consensus 2 GlilI~GptGSGKTTll~~-ll~~~~~---~~~~~i~t~e 37 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAA-MIDYINK---NKTHHILTIE 37 (198)
T ss_pred cEEEEECCCCCCHHHHHHH-HHHHhhh---cCCcEEEEEc
Confidence 4688999999999988743 3433321 2234555543
No 404
>PRK11773 uvrD DNA-dependent helicase II; Provisional
Probab=87.71 E-value=1.1 Score=56.91 Aligned_cols=104 Identities=20% Similarity=0.169 Sum_probs=64.9
Q ss_pred HHHHHHHHHHHHcCCeEEEEecCCCchhhhHHHHHHHHHHHHhcCCceEEEechhHHHHHHHHHHHHHHHhCCcccceee
Q 001817 300 YKERDALLKAISENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERGEKLGESVG 379 (1009)
Q Consensus 300 ~~~q~~il~~l~~~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~IvvtqPrR~La~qva~rva~e~~~~~g~~vG 379 (1009)
...|.+++.. ....++|.|..|||||+.+..-+...+ ....-....|+++.-|+.+|.++.+|+.+..+..
T Consensus 11 n~~Q~~av~~--~~g~~lV~AgaGSGKT~vl~~Ria~Li-~~~~v~p~~IL~lTFT~kAA~Em~~Rl~~~~~~~------ 81 (721)
T PRK11773 11 NDKQREAVAA--PLGNMLVLAGAGSGKTRVLVHRIAWLM-QVENASPYSIMAVTFTNKAAAEMRHRIEQLLGTS------ 81 (721)
T ss_pred CHHHHHHHhC--CCCCEEEEecCCCCHHHHHHHHHHHHH-HcCCCChhHeEeeeccHHHHHHHHHHHHHHhccC------
Confidence 3445555443 356788899999999988766555433 2222234579999999999999999998765421
Q ss_pred eeeeeccccCCCcEEEEEccHHHHHHHhcCC----CCCCccEEEEeCCC
Q 001817 380 YKVRLEGMKGRDTRLMFCTTGILLRRLLVDR----SLRGVTHVIVDEIH 424 (1009)
Q Consensus 380 y~vr~e~~~~~~t~Iiv~T~g~Ll~~L~~~~----~l~~is~IIIDEaH 424 (1009)
...+.|+|--.+...++... .+. -++-|+|+.+
T Consensus 82 -----------~~~~~i~TfHs~~~~iLr~~~~~~g~~-~~f~i~d~~d 118 (721)
T PRK11773 82 -----------QGGMWVGTFHGLAHRLLRAHWQDANLP-QDFQILDSDD 118 (721)
T ss_pred -----------CCCCEEEcHHHHHHHHHHHHHHHhCCC-CCCeecCHHH
Confidence 12467888765544443221 111 1245677765
No 405
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=87.69 E-value=2.1 Score=49.73 Aligned_cols=37 Identities=24% Similarity=0.338 Sum_probs=23.0
Q ss_pred CCeEEEEecCCCchhhhHHHHHHHHHHHHhcCCceEEEec
Q 001817 313 NQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICT 352 (1009)
Q Consensus 313 ~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~Ivvt 352 (1009)
.+.++|.|++|+|||..+ +.+-..... .+...+++++
T Consensus 113 ~nplfi~G~~GlGKTHLl-~Aign~~~~--~~~~a~v~y~ 149 (408)
T COG0593 113 YNPLFIYGGVGLGKTHLL-QAIGNEALA--NGPNARVVYL 149 (408)
T ss_pred CCcEEEECCCCCCHHHHH-HHHHHHHHh--hCCCceEEec
Confidence 567899999999999433 333333322 3445566664
No 406
>COG1074 RecB ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [DNA replication, recombination, and repair]
Probab=87.60 E-value=0.67 Score=61.44 Aligned_cols=63 Identities=24% Similarity=0.250 Sum_probs=50.9
Q ss_pred HHcCCeEEEEecCCCchhhhHHHHHHHHHHHHhcCCceEEEechhHHHHHHHHHHHHHHHhCC
Q 001817 310 ISENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERGE 372 (1009)
Q Consensus 310 l~~~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~IvvtqPrR~La~qva~rva~e~~~ 372 (1009)
...+++++|.|..|||||.++..-++..++..+.-.--.|+|+.-|+.+|.++.+||.+.+..
T Consensus 13 ~~~~~~~lveASAGSGKT~vL~~r~lrlLl~~~~~~v~~ILvvTFT~aAa~Emk~RI~~~L~~ 75 (1139)
T COG1074 13 SPPGQSVLVEASAGTGKTFVLAERVLRLLLEGGPLDVDEILVVTFTKAAAAEMKERIRDRLKE 75 (1139)
T ss_pred cCCCCcEEEEEcCCCCchhHHHHHHHHHHhhcCCCChhHeeeeeccHHHHHHHHHHHHHHHHH
Confidence 446889999999999999998888888777532123447999999999999999999876643
No 407
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=87.59 E-value=2.3 Score=49.70 Aligned_cols=20 Identities=30% Similarity=0.370 Sum_probs=16.1
Q ss_pred CCeEEEEecCCCchhhhHHH
Q 001817 313 NQVVVVSGETGCGKTTQLPQ 332 (1009)
Q Consensus 313 ~~~vII~apTGSGKTt~~~~ 332 (1009)
...+++.||+|||||+.+-.
T Consensus 165 p~gvLL~GppGtGKT~lAka 184 (389)
T PRK03992 165 PKGVLLYGPPGTGKTLLAKA 184 (389)
T ss_pred CCceEEECCCCCChHHHHHH
Confidence 45689999999999966543
No 408
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=87.56 E-value=0.39 Score=55.48 Aligned_cols=28 Identities=25% Similarity=0.308 Sum_probs=21.3
Q ss_pred HHcCCeEEEEecCCCchhhhHHHHHHHHH
Q 001817 310 ISENQVVVVSGETGCGKTTQLPQYILESE 338 (1009)
Q Consensus 310 l~~~~~vII~apTGSGKTt~~~~~ile~~ 338 (1009)
+-.|+.+.|+||+|+||||.+-. +...+
T Consensus 165 ig~Gq~~~IvG~~g~GKTtL~~~-i~~~I 192 (415)
T TIGR00767 165 IGKGQRGLIVAPPKAGKTVLLQK-IAQAI 192 (415)
T ss_pred eCCCCEEEEECCCCCChhHHHHH-HHHhh
Confidence 45799999999999999975443 44443
No 409
>CHL00095 clpC Clp protease ATP binding subunit
Probab=87.55 E-value=1.8 Score=55.61 Aligned_cols=54 Identities=26% Similarity=0.329 Sum_probs=30.7
Q ss_pred HHHHHHhcCCCCCCccEEEEeCCCcCCCcchHHHHHHHHHcccC----------CCCcEEEeccCCCHHH
Q 001817 401 ILLRRLLVDRSLRGVTHVIVDEIHERGMNEDFLLIVLKELLPRR----------PELRLILMSATLNAEL 460 (1009)
Q Consensus 401 ~Ll~~L~~~~~l~~is~IIIDEaHeR~~~~d~ll~llk~ll~~~----------~~lkvIlmSATl~~~~ 460 (1009)
.|...+... .+++|++||++. .+.++...+++.+-.-+ -.--+++||..+..+.
T Consensus 602 ~l~~~~~~~----p~~VvllDeiek--a~~~v~~~Llq~le~g~~~d~~g~~v~~~~~i~I~Tsn~g~~~ 665 (821)
T CHL00095 602 QLTEAVRKK----PYTVVLFDEIEK--AHPDIFNLLLQILDDGRLTDSKGRTIDFKNTLIIMTSNLGSKV 665 (821)
T ss_pred hHHHHHHhC----CCeEEEECChhh--CCHHHHHHHHHHhccCceecCCCcEEecCceEEEEeCCcchHH
Confidence 344444433 358999999996 66666655555443211 0113666776665543
No 410
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=87.17 E-value=2 Score=48.42 Aligned_cols=29 Identities=31% Similarity=0.397 Sum_probs=21.3
Q ss_pred HHHHHHcCC--eEEEEecCCCchhhhHHHHH
Q 001817 306 LLKAISENQ--VVVVSGETGCGKTTQLPQYI 334 (1009)
Q Consensus 306 il~~l~~~~--~vII~apTGSGKTt~~~~~i 334 (1009)
+...|++|+ .+|+.||.|+|||+.+-+.+
T Consensus 153 lrs~ieq~~ipSmIlWGppG~GKTtlArlia 183 (554)
T KOG2028|consen 153 LRSLIEQNRIPSMILWGPPGTGKTTLARLIA 183 (554)
T ss_pred HHHHHHcCCCCceEEecCCCCchHHHHHHHH
Confidence 344555554 68999999999998776544
No 411
>PF12846 AAA_10: AAA-like domain
Probab=87.11 E-value=0.72 Score=51.18 Aligned_cols=42 Identities=26% Similarity=0.377 Sum_probs=27.5
Q ss_pred CCeEEEEecCCCchhhhHHHHHHHHHHHHhcCCceEEEechhHHHHH
Q 001817 313 NQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISA 359 (1009)
Q Consensus 313 ~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~IvvtqPrR~La 359 (1009)
|.+++|.|+||||||+.+-..+ ...... +..++++=|.....
T Consensus 1 n~h~~i~G~tGsGKT~~~~~l~-~~~~~~----g~~~~i~D~~g~~~ 42 (304)
T PF12846_consen 1 NPHTLILGKTGSGKTTLLKNLL-EQLIRR----GPRVVIFDPKGDYS 42 (304)
T ss_pred CCeEEEECCCCCcHHHHHHHHH-HHHHHc----CCCEEEEcCCchHH
Confidence 5789999999999997777444 444332 24556655554433
No 412
>TIGR02785 addA_Gpos recombination helicase AddA, Firmicutes type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the Firmicutes (as modeled here) and the alphaproteobacteria, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=86.96 E-value=1.1 Score=60.21 Aligned_cols=133 Identities=15% Similarity=0.145 Sum_probs=74.8
Q ss_pred HHHHHHHHHHHcCCeEEEEecCCCchhhhHHHHHHHHHHHHhcCCceEEEechhHHHHHHHHHHHHHHHhCCcccceeee
Q 001817 301 KERDALLKAISENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERGEKLGESVGY 380 (1009)
Q Consensus 301 ~~q~~il~~l~~~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~IvvtqPrR~La~qva~rva~e~~~~~g~~vGy 380 (1009)
.|+++| . ..+++++|+|.-|||||+++..-++..+.. + .....|+++.=|+.+|.++.+|+.+.+...+...-..
T Consensus 5 ~Q~~ai-~--~~~~~~lv~A~AGsGKT~~lv~r~~~~~~~-~-~~~~~il~~tFt~~aa~e~~~ri~~~l~~~~~~~p~~ 79 (1232)
T TIGR02785 5 EQWQAI-Y--TRGQNILVSASAGSGKTAVLVERIIKKILR-G-VDIDRLLVVTFTNAAAREMKERIEEALQKALQQEPNS 79 (1232)
T ss_pred HHHHHH-h--CCCCCEEEEecCCCcHHHHHHHHHHHHHhc-C-CCHhhEEEEeccHHHHHHHHHHHHHHHHHHHhcCchh
Confidence 344444 3 368899999999999999988877775542 2 1223577777999999999999988764433211110
Q ss_pred eeeeccccCCCcEEEEEccHHHHHHHhc-CCCCCCc--cEEEEeCCCcCCCcchHHHHHHHH
Q 001817 381 KVRLEGMKGRDTRLMFCTTGILLRRLLV-DRSLRGV--THVIVDEIHERGMNEDFLLIVLKE 439 (1009)
Q Consensus 381 ~vr~e~~~~~~t~Iiv~T~g~Ll~~L~~-~~~l~~i--s~IIIDEaHeR~~~~d~ll~llk~ 439 (1009)
.+.......-...-|+|-..+...+.. ....-++ ++=|.||....-+..+.+..++..
T Consensus 80 -~~L~~q~~~~~~~~i~Tihsf~~~~~~~~~~~l~ldP~F~i~de~e~~ll~~e~~~~~~e~ 140 (1232)
T TIGR02785 80 -KHLRRQLALLNTANISTLHSFCLKVIRKHYYLLDLDPSFRILTDTEQLLLIKEVVDDVFEE 140 (1232)
T ss_pred -HHHHHHHhhccCCeEeeHHHHHHHHHHHhhhhcCCCCCceeCCHHHHHHHHHHHHHHHHHH
Confidence 001111111123467786655544433 2221122 344578776432333444444433
No 413
>KOG2036 consensus Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=86.88 E-value=7.5 Score=47.21 Aligned_cols=125 Identities=19% Similarity=0.237 Sum_probs=76.5
Q ss_pred CCeEEEEecCCCchhhhHHHHHHHHHHHHhcCCceEEEechhHHHHHHHHHHHHHHHhCC-cccceeeeeeeec------
Q 001817 313 NQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERGE-KLGESVGYKVRLE------ 385 (1009)
Q Consensus 313 ~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~IvvtqPrR~La~qva~rva~e~~~-~~g~~vGy~vr~e------ 385 (1009)
+..+-+.|.-|-|||.+..+.|...+. -....|.||.|.-+-...+.+.+.+-+.. ..-.-+.|.+-..
T Consensus 275 r~~vsLtA~RGRGKSAALGlsiA~AVa----~GysnIyvtSPspeNlkTlFeFv~kGfDaL~Yqeh~Dy~iI~s~np~fk 350 (1011)
T KOG2036|consen 275 RSTVSLTASRGRGKSAALGLSIAGAVA----FGYSNIYVTSPSPENLKTLFEFVFKGFDALEYQEHVDYDIIQSTNPDFK 350 (1011)
T ss_pred cceEEEEecCCCCchhhhhHHHHHHHh----cCcceEEEcCCChHHHHHHHHHHHcchhhhcchhhcchhhhhhcChhhh
Confidence 456778999999999888887776542 24568999999999888888888665421 1111222222111
Q ss_pred -------cccCCCcEEEEEccHHHHHHHhcCCCCCCccEEEEeCCCcCCCcchHHHHHHHHHcccCCCCcEEEeccCCCH
Q 001817 386 -------GMKGRDTRLMFCTTGILLRRLLVDRSLRGVTHVIVDEIHERGMNEDFLLIVLKELLPRRPELRLILMSATLNA 458 (1009)
Q Consensus 386 -------~~~~~~t~Iiv~T~g~Ll~~L~~~~~l~~is~IIIDEaHeR~~~~d~ll~llk~ll~~~~~lkvIlmSATl~~ 458 (1009)
-.....--|-|..|.-- ..+....++|||||-. +-+-+++.++ ..-+++|+.|+|.
T Consensus 351 kaivRInifr~hrQtIQYi~P~D~-------~kl~q~eLlVIDEAAA------IPLplvk~Li----gPylVfmaSTinG 413 (1011)
T KOG2036|consen 351 KAIVRINIFREHRQTIQYISPHDH-------QKLGQAELLVIDEAAA------IPLPLVKKLI----GPYLVFMASTING 413 (1011)
T ss_pred hhEEEEEEeccccceeEeeccchh-------hhccCCcEEEechhhc------CCHHHHHHhh----cceeEEEeecccc
Confidence 00111111223333211 1467889999999985 2344566665 2348999999863
No 414
>COG3598 RepA RecA-family ATPase [DNA replication, recombination, and repair]
Probab=86.74 E-value=2.7 Score=46.78 Aligned_cols=149 Identities=16% Similarity=0.169 Sum_probs=76.6
Q ss_pred HHHHHHHHcCCeEEEEecCCCchhhhHHHHHHHHHHHH---h--cCCceEEEe--chhHHHHHHHHHHHHHHHhCCcccc
Q 001817 304 DALLKAISENQVVVVSGETGCGKTTQLPQYILESETEA---A--RGAACSIIC--TQPRRISAMAVSERVAAERGEKLGE 376 (1009)
Q Consensus 304 ~~il~~l~~~~~vII~apTGSGKTt~~~~~ile~~~~~---~--~~~~~~Ivv--tqPrR~La~qva~rva~e~~~~~g~ 376 (1009)
+-|-+.+.++-.++|.|+.|.||||.+++.++....-. + ....+++++ ..-.|+-+..--+.|...+|...+.
T Consensus 80 ~lId~~fr~g~~~~~~gdsg~GKttllL~l~IalaaG~~lfG~~v~epGkvlyvslEl~re~~L~Rl~~v~a~mgLsPad 159 (402)
T COG3598 80 QLIDEFFRKGYVSILYGDSGVGKTTLLLYLCIALAAGKNLFGNKVKEPGKVLYVSLELYREDILERLEPVRARMGLSPAD 159 (402)
T ss_pred hhhhHHhhcCeeEEEecCCcccHhHHHHHHHHHHHhhHHHhcccccCCCeEEEEEeccChHHHHHHHHHHHHHcCCChHh
Confidence 33455667788888899999999998887766543211 0 111233433 3355565666566677777766554
Q ss_pred eeeeee-eeccccCCCcEEEEEccHHHHHHHhcCCCCCCccEEEEeCCCcCC----CcchHHHHHHHHHcc--cCCCCcE
Q 001817 377 SVGYKV-RLEGMKGRDTRLMFCTTGILLRRLLVDRSLRGVTHVIVDEIHERG----MNEDFLLIVLKELLP--RRPELRL 449 (1009)
Q Consensus 377 ~vGy~v-r~e~~~~~~t~Iiv~T~g~Ll~~L~~~~~l~~is~IIIDEaHeR~----~~~d~ll~llk~ll~--~~~~lkv 449 (1009)
.-.... ..+. .....+ +..| .|.+.......-.+.++||||=.=.-. ...+-....++...+ ..-++-|
T Consensus 160 vrn~dltd~~G-aa~~~d--~l~p-kl~rRfek~~~Q~rp~~vViDp~v~f~~G~s~s~vqv~~fi~~~rkla~~l~caI 235 (402)
T COG3598 160 VRNMDLTDVSG-AADESD--VLSP-KLYRRFEKILEQKRPDFVVIDPFVAFYEGKSISDVQVKEFIKKTRKLARNLECAI 235 (402)
T ss_pred hhheecccccc-CCCccc--cccH-HHHHHHHHHHHHhCCCeEEEcchhhhcCCccchhHHHHHHHHHHHHHHHhcCCeE
Confidence 322111 0011 111111 2233 555555433344567888888764211 111222222322221 2345668
Q ss_pred EEeccCC
Q 001817 450 ILMSATL 456 (1009)
Q Consensus 450 IlmSATl 456 (1009)
|.++-|.
T Consensus 236 iy~hHts 242 (402)
T COG3598 236 IYIHHTS 242 (402)
T ss_pred EEEeccc
Confidence 8887775
No 415
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=86.66 E-value=1.5 Score=45.12 Aligned_cols=23 Identities=26% Similarity=0.544 Sum_probs=18.9
Q ss_pred HHcCCeEEEEecCCCchhhhHHH
Q 001817 310 ISENQVVVVSGETGCGKTTQLPQ 332 (1009)
Q Consensus 310 l~~~~~vII~apTGSGKTt~~~~ 332 (1009)
+..++.+.|.|+.||||||.+-.
T Consensus 25 i~~Ge~~~i~G~nGsGKStLl~~ 47 (178)
T cd03247 25 LKQGEKIALLGRSGSGKSTLLQL 47 (178)
T ss_pred EcCCCEEEEECCCCCCHHHHHHH
Confidence 35789999999999999975543
No 416
>COG0630 VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=86.62 E-value=1 Score=50.97 Aligned_cols=50 Identities=24% Similarity=0.323 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHcCCeEEEEecCCCchhhhHHHHHHHHHHHHhcCCceEEEechhHH
Q 001817 301 KERDALLKAISENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRR 356 (1009)
Q Consensus 301 ~~q~~il~~l~~~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~IvvtqPrR 356 (1009)
.+-.-+..+++.+++++|+|+|||||||..-. ++..+ ....+++.+.-+.
T Consensus 131 ~~~ayL~~~ie~~~siii~G~t~sGKTt~lna-ll~~I-----p~~~rivtIEdt~ 180 (312)
T COG0630 131 EQAAYLWLAIEARKSIIICGGTASGKTTLLNA-LLDFI-----PPEERIVTIEDTP 180 (312)
T ss_pred HHHHHHHHHHHcCCcEEEECCCCCCHHHHHHH-HHHhC-----CchhcEEEEeccc
Confidence 33344778889999999999999999976543 33322 2344666654433
No 417
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=86.44 E-value=0.36 Score=50.78 Aligned_cols=21 Identities=43% Similarity=0.771 Sum_probs=18.5
Q ss_pred HHcCCeEEEEecCCCchhhhH
Q 001817 310 ISENQVVVVSGETGCGKTTQL 330 (1009)
Q Consensus 310 l~~~~~vII~apTGSGKTt~~ 330 (1009)
+..+.+++|+||.||||||.+
T Consensus 25 v~~Gevv~iiGpSGSGKSTlL 45 (240)
T COG1126 25 VEKGEVVVIIGPSGSGKSTLL 45 (240)
T ss_pred EcCCCEEEEECCCCCCHHHHH
Confidence 568999999999999999754
No 418
>CHL00176 ftsH cell division protein; Validated
Probab=86.30 E-value=3.4 Score=51.30 Aligned_cols=21 Identities=29% Similarity=0.355 Sum_probs=16.6
Q ss_pred CCeEEEEecCCCchhhhHHHH
Q 001817 313 NQVVVVSGETGCGKTTQLPQY 333 (1009)
Q Consensus 313 ~~~vII~apTGSGKTt~~~~~ 333 (1009)
.+.+++.||+|+|||+.+-..
T Consensus 216 p~gVLL~GPpGTGKT~LAral 236 (638)
T CHL00176 216 PKGVLLVGPPGTGKTLLAKAI 236 (638)
T ss_pred CceEEEECCCCCCHHHHHHHH
Confidence 456999999999999666433
No 419
>PRK10436 hypothetical protein; Provisional
Probab=86.20 E-value=0.93 Score=53.95 Aligned_cols=33 Identities=30% Similarity=0.506 Sum_probs=22.6
Q ss_pred HHHHHHHH-cCCeEEEEecCCCchhhhHHHHHHHH
Q 001817 304 DALLKAIS-ENQVVVVSGETGCGKTTQLPQYILES 337 (1009)
Q Consensus 304 ~~il~~l~-~~~~vII~apTGSGKTt~~~~~ile~ 337 (1009)
+.+..++. .+..++|+|||||||||..- .+++.
T Consensus 208 ~~l~~~~~~~~GliLvtGpTGSGKTTtL~-a~l~~ 241 (462)
T PRK10436 208 AQFRQALQQPQGLILVTGPTGSGKTVTLY-SALQT 241 (462)
T ss_pred HHHHHHHHhcCCeEEEECCCCCChHHHHH-HHHHh
Confidence 34444443 56789999999999998763 34443
No 420
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=86.11 E-value=0.57 Score=45.93 Aligned_cols=20 Identities=25% Similarity=0.566 Sum_probs=16.6
Q ss_pred eEEEEecCCCchhhhHHHHH
Q 001817 315 VVVVSGETGCGKTTQLPQYI 334 (1009)
Q Consensus 315 ~vII~apTGSGKTt~~~~~i 334 (1009)
+++++|++||||||.+-.+.
T Consensus 1 lii~~G~pgsGKSt~a~~l~ 20 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLA 20 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHH
Confidence 47899999999998876554
No 421
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=86.04 E-value=1.2 Score=48.92 Aligned_cols=57 Identities=25% Similarity=0.379 Sum_probs=37.7
Q ss_pred HHcCCeEEEEecCCCchhhhHHHHHHHHHHHHhcCCceEEEechhHHHHHHHHHHHHHHHhCCc
Q 001817 310 ISENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERGEK 373 (1009)
Q Consensus 310 l~~~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~IvvtqPrR~La~qva~rva~e~~~~ 373 (1009)
+..+.+++|.|++|||||+.+.+++.+.+.. |..+ +.+ -+.+...++.+.+.. +|..
T Consensus 20 ~p~g~~~lI~G~pGsGKT~f~~qfl~~~~~~---ge~v-lyv--s~~e~~~~l~~~~~~-~g~d 76 (260)
T COG0467 20 LPRGSVVLITGPPGTGKTIFALQFLYEGARE---GEPV-LYV--STEESPEELLENARS-FGWD 76 (260)
T ss_pred CcCCcEEEEEcCCCCcHHHHHHHHHHHHHhc---CCcE-EEE--EecCCHHHHHHHHHH-cCCC
Confidence 5578999999999999999999999886532 3333 333 334444555544433 4443
No 422
>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities [].
Probab=85.95 E-value=0.43 Score=58.29 Aligned_cols=67 Identities=25% Similarity=0.241 Sum_probs=48.2
Q ss_pred CHHHHHHHHHHHHcC--CeEEEEecCCCchhhhHHHHHHHHHHHHhcCCceEEEechhHHHHHHHHH-HHHHHH
Q 001817 299 SYKERDALLKAISEN--QVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVS-ERVAAE 369 (1009)
Q Consensus 299 i~~~q~~il~~l~~~--~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~IvvtqPrR~La~qva-~rva~e 369 (1009)
..+++.++++++... +.|++++++-+|||..+.-++...+ ....+.+++++||..+|.... +++.-.
T Consensus 17 ~~Py~~eimd~~~~~~v~~Vv~~k~aQ~GkT~~~~n~~g~~i----~~~P~~~l~v~Pt~~~a~~~~~~rl~Pm 86 (557)
T PF05876_consen 17 RTPYLREIMDALSDPSVREVVVMKSAQVGKTELLLNWIGYSI----DQDPGPMLYVQPTDDAAKDFSKERLDPM 86 (557)
T ss_pred CChhHHHHHHhcCCcCccEEEEEEcchhhHhHHHHhhceEEE----EeCCCCEEEEEEcHHHHHHHHHHHHHHH
Confidence 456789999999765 5788999999999985544443222 123467888899999998876 455443
No 423
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=85.91 E-value=0.84 Score=50.58 Aligned_cols=26 Identities=27% Similarity=0.552 Sum_probs=20.3
Q ss_pred HHHHcCCeEEEEecCCCchhhhHHHH
Q 001817 308 KAISENQVVVVSGETGCGKTTQLPQY 333 (1009)
Q Consensus 308 ~~l~~~~~vII~apTGSGKTt~~~~~ 333 (1009)
..+..++.++++||||||||..+-..
T Consensus 28 ~l~~~~~pvLl~G~~GtGKT~li~~~ 53 (272)
T PF12775_consen 28 LLLSNGRPVLLVGPSGTGKTSLIQNF 53 (272)
T ss_dssp HHHHCTEEEEEESSTTSSHHHHHHHH
T ss_pred HHHHcCCcEEEECCCCCchhHHHHhh
Confidence 33567899999999999999655443
No 424
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Probab=85.91 E-value=1.7 Score=52.50 Aligned_cols=136 Identities=14% Similarity=0.069 Sum_probs=73.2
Q ss_pred HHcCCeEEEEecCCCchhhhHHHHHHHHHHHHhcCCceEEEechhHHHHHHHHHHHHHHHhC-Ccccceee-eeee----
Q 001817 310 ISENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERG-EKLGESVG-YKVR---- 383 (1009)
Q Consensus 310 l~~~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~IvvtqPrR~La~qva~rva~e~~-~~~g~~vG-y~vr---- 383 (1009)
..+|=+.|+.-+-|-|||.|..-.+...... .+--+-.+|+.|--.| ..++..++.++- .++...-| -.-|
T Consensus 583 YdqGiNGILADeMGLGKTVQsisvlAhLaE~--~nIwGPFLVVtpaStL-~NWaqEisrFlP~~k~lpywGs~~eRkiLr 659 (1185)
T KOG0388|consen 583 YDQGINGILADEMGLGKTVQSISVLAHLAET--HNIWGPFLVVTPASTL-HNWAQEISRFLPSFKVLPYWGSPSERKILR 659 (1185)
T ss_pred HHccccceehhhhccchhHHHHHHHHHHHHh--ccCCCceEEeehHHHH-hHHHHHHHHhCccceeecCcCChhhhHHHH
Confidence 3568889999999999999887666543322 2233445666676555 334555555431 11111111 0000
Q ss_pred e-c-----cccCCCcEEEEEccHHHH---HHHhcCCCCCCccEEEEeCCCcCCCcchHHHHHHHHHcccCCCCcEEEecc
Q 001817 384 L-E-----GMKGRDTRLMFCTTGILL---RRLLVDRSLRGVTHVIVDEIHERGMNEDFLLIVLKELLPRRPELRLILMSA 454 (1009)
Q Consensus 384 ~-e-----~~~~~~t~Iiv~T~g~Ll---~~L~~~~~l~~is~IIIDEaHeR~~~~d~ll~llk~ll~~~~~lkvIlmSA 454 (1009)
- . -......+|+|++.+.+. ..++. -.+.+.|+|||+. +-+ ..-..++.++.....- -++++.
T Consensus 660 Kfw~rKnmY~rna~fhVviTSYQlvVtDeky~qk----vKWQYMILDEAQA--IKS-SsS~RWKtLLsF~cRN-RLLLTG 731 (1185)
T KOG0388|consen 660 KFWNRKNMYRRNAPFHVVITSYQLVVTDEKYLQK----VKWQYMILDEAQA--IKS-SSSSRWKTLLSFKCRN-RLLLTG 731 (1185)
T ss_pred HhcchhhhhccCCCceEEEEeeeeeechHHHHHh----hhhhheehhHHHH--hhh-hhhhHHHHHhhhhccc-eeeecC
Confidence 0 0 012345788888876553 12211 1356899999994 221 1223466666532211 577788
Q ss_pred CC
Q 001817 455 TL 456 (1009)
Q Consensus 455 Tl 456 (1009)
|+
T Consensus 732 TP 733 (1185)
T KOG0388|consen 732 TP 733 (1185)
T ss_pred Cc
Confidence 86
No 425
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=85.90 E-value=1.6 Score=47.88 Aligned_cols=19 Identities=37% Similarity=0.412 Sum_probs=15.9
Q ss_pred CeEEEEecCCCchhhhHHH
Q 001817 314 QVVVVSGETGCGKTTQLPQ 332 (1009)
Q Consensus 314 ~~vII~apTGSGKTt~~~~ 332 (1009)
+.+++.||+|-||||.+-.
T Consensus 53 DHvLl~GPPGlGKTTLA~I 71 (332)
T COG2255 53 DHVLLFGPPGLGKTTLAHI 71 (332)
T ss_pred CeEEeeCCCCCcHHHHHHH
Confidence 4689999999999976644
No 426
>PRK04328 hypothetical protein; Provisional
Probab=85.88 E-value=1.2 Score=48.60 Aligned_cols=29 Identities=34% Similarity=0.550 Sum_probs=25.0
Q ss_pred HHcCCeEEEEecCCCchhhhHHHHHHHHH
Q 001817 310 ISENQVVVVSGETGCGKTTQLPQYILESE 338 (1009)
Q Consensus 310 l~~~~~vII~apTGSGKTt~~~~~ile~~ 338 (1009)
+..+..++|.|++|||||+.+.+++.+.+
T Consensus 20 ip~gs~ili~G~pGsGKT~l~~~fl~~~~ 48 (249)
T PRK04328 20 IPERNVVLLSGGPGTGKSIFSQQFLWNGL 48 (249)
T ss_pred CcCCcEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 34578999999999999999999988754
No 427
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=85.85 E-value=1.1 Score=56.39 Aligned_cols=68 Identities=15% Similarity=0.239 Sum_probs=55.1
Q ss_pred CCCcEEEEcCCHhHHHHHHHHHHcCCCCCCCCCeEEEEecCCCCHHHHHhhcCCCCCCceEEEEecCcc
Q 001817 576 RPGAVLVFMTGWDDINSLKDQLQAHPLLGDPSRVLLLACHGSMASSEQRLIFDKPEDGVRKIVLATNMA 644 (1009)
Q Consensus 576 ~~g~iLVFl~~~~~i~~l~~~L~~~~~~~~~~~~~v~~lHs~l~~~er~~v~~~f~~G~~kVLVATnia 644 (1009)
.++++++.+||..-+..+++.|.............+. +||.|+.++++.+++.+.+|..+|+|+|+..
T Consensus 124 kgkr~yii~PT~~Lv~Q~~~kl~~~~e~~~~~~~~~~-yh~~l~~~ekee~le~i~~gdfdIlitTs~F 191 (1187)
T COG1110 124 KGKRVYIIVPTTTLVRQVYERLKKFAEDAGSLDVLVV-YHSALPTKEKEEALERIESGDFDILITTSQF 191 (1187)
T ss_pred cCCeEEEEecCHHHHHHHHHHHHHHHhhcCCcceeee-eccccchHHHHHHHHHHhcCCccEEEEeHHH
Confidence 3478999999999999999988865332222344455 9999999999999999999999999999753
No 428
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=85.73 E-value=2.4 Score=42.07 Aligned_cols=22 Identities=32% Similarity=0.524 Sum_probs=18.5
Q ss_pred HHcCCeEEEEecCCCchhhhHH
Q 001817 310 ISENQVVVVSGETGCGKTTQLP 331 (1009)
Q Consensus 310 l~~~~~vII~apTGSGKTt~~~ 331 (1009)
+..++.+.|.|+.||||||.+-
T Consensus 23 ~~~Ge~~~i~G~nGsGKStLl~ 44 (144)
T cd03221 23 INPGDRIGLVGRNGAGKSTLLK 44 (144)
T ss_pred ECCCCEEEEECCCCCCHHHHHH
Confidence 3578999999999999996654
No 429
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=85.66 E-value=2.5 Score=53.95 Aligned_cols=22 Identities=23% Similarity=0.404 Sum_probs=17.1
Q ss_pred cCCeEEEEecCCCchhhhHHHH
Q 001817 312 ENQVVVVSGETGCGKTTQLPQY 333 (1009)
Q Consensus 312 ~~~~vII~apTGSGKTt~~~~~ 333 (1009)
.+..+++.||+|+|||+.+-..
T Consensus 346 ~~~~lll~GppG~GKT~lAk~i 367 (775)
T TIGR00763 346 KGPILCLVGPPGVGKTSLGKSI 367 (775)
T ss_pred CCceEEEECCCCCCHHHHHHHH
Confidence 3467999999999999665443
No 430
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=85.56 E-value=3.6 Score=48.58 Aligned_cols=106 Identities=22% Similarity=0.384 Sum_probs=59.4
Q ss_pred eEEEEecCCCchhhhHHHHHHHHHHHHhcCCceEEEechhHHHHHHHHHHHHHHHhCCcccceeeeeeeeccccCCCcEE
Q 001817 315 VVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERGEKLGESVGYKVRLEGMKGRDTRL 394 (1009)
Q Consensus 315 ~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~IvvtqPrR~La~qva~rva~e~~~~~g~~vGy~vr~e~~~~~~t~I 394 (1009)
.+++.||.|||||+.+.+..+. ...+-|=++.|....-.+=..+++.
T Consensus 540 SvLl~Gp~~sGKTaLAA~iA~~-------S~FPFvKiiSpe~miG~sEsaKc~~-------------------------- 586 (744)
T KOG0741|consen 540 SVLLEGPPGSGKTALAAKIALS-------SDFPFVKIISPEDMIGLSESAKCAH-------------------------- 586 (744)
T ss_pred EEEEecCCCCChHHHHHHHHhh-------cCCCeEEEeChHHccCccHHHHHHH--------------------------
Confidence 5889999999999888776654 2334444444654433222222211
Q ss_pred EEEccHHHHHHHhcCCCCCCccEEEEeCCCcC------C-CcchHHHHHHHHHcccCCC--CcEEEeccCCCHHHH
Q 001817 395 MFCTTGILLRRLLVDRSLRGVTHVIVDEIHER------G-MNEDFLLIVLKELLPRRPE--LRLILMSATLNAELF 461 (1009)
Q Consensus 395 iv~T~g~Ll~~L~~~~~l~~is~IIIDEaHeR------~-~~~d~ll~llk~ll~~~~~--lkvIlmSATl~~~~~ 461 (1009)
++....|..-+.+++||+|++... | -.+...+..|..++++.|. .|++++.-|-..+.+
T Consensus 587 --------i~k~F~DAYkS~lsiivvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL 654 (744)
T KOG0741|consen 587 --------IKKIFEDAYKSPLSIIVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVL 654 (744)
T ss_pred --------HHHHHHHhhcCcceEEEEcchhhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHH
Confidence 112222334456788999998721 1 1233455566666665543 367777666555433
No 431
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=85.51 E-value=0.49 Score=45.19 Aligned_cols=17 Identities=41% Similarity=0.561 Sum_probs=14.2
Q ss_pred EEEEecCCCchhhhHHH
Q 001817 316 VVVSGETGCGKTTQLPQ 332 (1009)
Q Consensus 316 vII~apTGSGKTt~~~~ 332 (1009)
++|.|++||||||.+-.
T Consensus 1 I~i~G~~GsGKtTia~~ 17 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKE 17 (129)
T ss_dssp EEEEESTTSSHHHHHHH
T ss_pred CEEECCCCCCHHHHHHH
Confidence 57899999999977643
No 432
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=85.50 E-value=1.4 Score=53.12 Aligned_cols=41 Identities=20% Similarity=0.255 Sum_probs=30.2
Q ss_pred HHcCCeEEEEecCCCchhhhHHHHHHHHHHHHhcCCceEEEec
Q 001817 310 ISENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICT 352 (1009)
Q Consensus 310 l~~~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~Ivvt 352 (1009)
+-.+..++|.|++|||||+.+.+++.+.+.+ .+..+..+.+
T Consensus 18 lp~g~~~Li~G~pGsGKT~la~qfl~~g~~~--~ge~~lyvs~ 58 (484)
T TIGR02655 18 LPIGRSTLVSGTSGTGKTLFSIQFLYNGIIH--FDEPGVFVTF 58 (484)
T ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHHHHHHh--CCCCEEEEEE
Confidence 3468899999999999999999999876542 1334444443
No 433
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=85.47 E-value=0.92 Score=55.63 Aligned_cols=34 Identities=38% Similarity=0.536 Sum_probs=23.3
Q ss_pred HHHHHHHHH-cCCeEEEEecCCCchhhhHHHHHHHH
Q 001817 303 RDALLKAIS-ENQVVVVSGETGCGKTTQLPQYILES 337 (1009)
Q Consensus 303 q~~il~~l~-~~~~vII~apTGSGKTt~~~~~ile~ 337 (1009)
.+.+..++. .+..++|+|||||||||..- .++..
T Consensus 305 ~~~l~~~~~~~~Glilv~G~tGSGKTTtl~-a~l~~ 339 (564)
T TIGR02538 305 KALFLEAIHKPQGMVLVTGPTGSGKTVSLY-TALNI 339 (564)
T ss_pred HHHHHHHHHhcCCeEEEECCCCCCHHHHHH-HHHHh
Confidence 344555554 46788999999999998763 34443
No 434
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=85.36 E-value=0.48 Score=51.74 Aligned_cols=26 Identities=35% Similarity=0.367 Sum_probs=20.5
Q ss_pred HHcCCeEEEEecCCCchhhhHHHHHHH
Q 001817 310 ISENQVVVVSGETGCGKTTQLPQYILE 336 (1009)
Q Consensus 310 l~~~~~vII~apTGSGKTt~~~~~ile 336 (1009)
+..|+.++|.||.|+||||.+ ..++.
T Consensus 13 i~~Gqr~~I~G~~G~GKTTLl-r~I~n 38 (249)
T cd01128 13 IGKGQRGLIVAPPKAGKTTLL-QSIAN 38 (249)
T ss_pred cCCCCEEEEECCCCCCHHHHH-HHHHh
Confidence 457999999999999999754 34444
No 435
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=85.35 E-value=2.9 Score=51.73 Aligned_cols=23 Identities=26% Similarity=0.741 Sum_probs=18.4
Q ss_pred cCCeEEEEecCCCchhhhHHHHH
Q 001817 312 ENQVVVVSGETGCGKTTQLPQYI 334 (1009)
Q Consensus 312 ~~~~vII~apTGSGKTt~~~~~i 334 (1009)
.++.+++.||+||||||.+-...
T Consensus 109 ~~~illL~GP~GsGKTTl~~~la 131 (637)
T TIGR00602 109 PKRILLITGPSGCGKSTTIKILS 131 (637)
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 35679999999999998775544
No 436
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=85.32 E-value=0.63 Score=53.41 Aligned_cols=38 Identities=32% Similarity=0.546 Sum_probs=25.0
Q ss_pred cCCeEEEEecCCCchhhhHHHHHHHHHHHHhcCCceEEEech
Q 001817 312 ENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQ 353 (1009)
Q Consensus 312 ~~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~Ivvtq 353 (1009)
.+..++|+|||||||||.+-. ++..+. .....+|+.+.
T Consensus 121 ~~g~ili~G~tGSGKTT~l~a-l~~~i~---~~~~~~i~tiE 158 (343)
T TIGR01420 121 PRGLILVTGPTGSGKSTTLAS-MIDYIN---KNAAGHIITIE 158 (343)
T ss_pred cCcEEEEECCCCCCHHHHHHH-HHHhhC---cCCCCEEEEEc
Confidence 467999999999999987743 444332 12234666654
No 437
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=85.26 E-value=1.7 Score=54.67 Aligned_cols=79 Identities=16% Similarity=0.220 Sum_probs=64.3
Q ss_pred CCCcEEEEcCCHhHHHHHHHHHHcCCCCCCCCCeEEEEecCCCCHHHHHhhcCCCCCCceEEEEecC-ccccccCCCCee
Q 001817 576 RPGAVLVFMTGWDDINSLKDQLQAHPLLGDPSRVLLLACHGSMASSEQRLIFDKPEDGVRKIVLATN-MAETSITINDVV 654 (1009)
Q Consensus 576 ~~g~iLVFl~~~~~i~~l~~~L~~~~~~~~~~~~~v~~lHs~l~~~er~~v~~~f~~G~~kVLVATn-iae~GIdIp~V~ 654 (1009)
.+.+++|.+|+..-+...++.++... ...++.+..+||+++..+|..+++...+|...|||+|. .+...+.+.++.
T Consensus 309 ~g~q~lilaPT~~LA~Q~~~~l~~l~---~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~v~~~~l~ 385 (681)
T PRK10917 309 AGYQAALMAPTEILAEQHYENLKKLL---EPLGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQDDVEFHNLG 385 (681)
T ss_pred cCCeEEEEeccHHHHHHHHHHHHHHH---hhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcccchhcccc
Confidence 35689999999999998888887641 11257799999999999999999999999999999996 455567788887
Q ss_pred EEE
Q 001817 655 FVI 657 (1009)
Q Consensus 655 ~VI 657 (1009)
+||
T Consensus 386 lvV 388 (681)
T PRK10917 386 LVI 388 (681)
T ss_pred eEE
Confidence 766
No 438
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=85.25 E-value=0.77 Score=46.17 Aligned_cols=23 Identities=30% Similarity=0.592 Sum_probs=18.6
Q ss_pred HHcCCeEEEEecCCCchhhhHHH
Q 001817 310 ISENQVVVVSGETGCGKTTQLPQ 332 (1009)
Q Consensus 310 l~~~~~vII~apTGSGKTt~~~~ 332 (1009)
+..++.+.|.|++|+||||.+-.
T Consensus 22 i~~g~~~~i~G~nGsGKStll~~ 44 (157)
T cd00267 22 LKAGEIVALVGPNGSGKSTLLRA 44 (157)
T ss_pred EcCCCEEEEECCCCCCHHHHHHH
Confidence 35788999999999999975543
No 439
>PRK13764 ATPase; Provisional
Probab=85.21 E-value=0.93 Score=55.43 Aligned_cols=27 Identities=26% Similarity=0.394 Sum_probs=21.1
Q ss_pred HcCCeEEEEecCCCchhhhHHHHHHHHH
Q 001817 311 SENQVVVVSGETGCGKTTQLPQYILESE 338 (1009)
Q Consensus 311 ~~~~~vII~apTGSGKTt~~~~~ile~~ 338 (1009)
..+.+++|+|||||||||.+ ..+++.+
T Consensus 255 ~~~~~ILIsG~TGSGKTTll-~AL~~~i 281 (602)
T PRK13764 255 ERAEGILIAGAPGAGKSTFA-QALAEFY 281 (602)
T ss_pred hcCCEEEEECCCCCCHHHHH-HHHHHHH
Confidence 45788999999999999866 4555544
No 440
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=85.18 E-value=2.2 Score=54.20 Aligned_cols=21 Identities=29% Similarity=0.321 Sum_probs=16.3
Q ss_pred CCeEEEEecCCCchhhhHHHH
Q 001817 313 NQVVVVSGETGCGKTTQLPQY 333 (1009)
Q Consensus 313 ~~~vII~apTGSGKTt~~~~~ 333 (1009)
.+.+++.||+|||||+.+-..
T Consensus 487 ~~giLL~GppGtGKT~lakal 507 (733)
T TIGR01243 487 PKGVLLFGPPGTGKTLLAKAV 507 (733)
T ss_pred CceEEEECCCCCCHHHHHHHH
Confidence 456899999999999665443
No 441
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=84.98 E-value=0.65 Score=50.22 Aligned_cols=34 Identities=12% Similarity=0.208 Sum_probs=27.8
Q ss_pred HHHHHHcCCeEEEEecCCCchhhhHHHHHHHHHH
Q 001817 306 LLKAISENQVVVVSGETGCGKTTQLPQYILESET 339 (1009)
Q Consensus 306 il~~l~~~~~vII~apTGSGKTt~~~~~ile~~~ 339 (1009)
++.-+..++.++|+|+||+|||+.+.+++.+.+.
T Consensus 6 ~~~Gl~~G~l~lI~G~~G~GKT~~~~~~~~~~~~ 39 (242)
T cd00984 6 LTGGLQPGDLIIIAARPSMGKTAFALNIAENIAK 39 (242)
T ss_pred hhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 3345667899999999999999998888877654
No 442
>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase. Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.
Probab=84.96 E-value=1 Score=51.59 Aligned_cols=47 Identities=26% Similarity=0.313 Sum_probs=30.4
Q ss_pred HHHHHHcCCeEEEEecCCCchhhhHHHHHHHHHHHHhcCCceEEEechhHHHH
Q 001817 306 LLKAISENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRIS 358 (1009)
Q Consensus 306 il~~l~~~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~IvvtqPrR~L 358 (1009)
+..++..+.+++|+|+|||||||.+-. ++..+ ....+++++..+.++
T Consensus 171 L~~~v~~~~~ili~G~tGsGKTTll~a-l~~~i-----~~~~riv~iEd~~El 217 (340)
T TIGR03819 171 LRAIVAARLAFLISGGTGSGKTTLLSA-LLALV-----APDERIVLVEDAAEL 217 (340)
T ss_pred HHHHHhCCCeEEEECCCCCCHHHHHHH-HHccC-----CCCCcEEEECCccee
Confidence 334456788999999999999976643 33322 123456666655554
No 443
>PRK13695 putative NTPase; Provisional
Probab=84.95 E-value=3.7 Score=41.99 Aligned_cols=19 Identities=32% Similarity=0.510 Sum_probs=15.8
Q ss_pred eEEEEecCCCchhhhHHHH
Q 001817 315 VVVVSGETGCGKTTQLPQY 333 (1009)
Q Consensus 315 ~vII~apTGSGKTt~~~~~ 333 (1009)
.++++|+.||||||.+-..
T Consensus 2 ~i~ltG~~G~GKTTll~~i 20 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKI 20 (174)
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4688999999999877754
No 444
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=84.85 E-value=5.6 Score=50.39 Aligned_cols=20 Identities=30% Similarity=0.446 Sum_probs=16.3
Q ss_pred CCeEEEEecCCCchhhhHHH
Q 001817 313 NQVVVVSGETGCGKTTQLPQ 332 (1009)
Q Consensus 313 ~~~vII~apTGSGKTt~~~~ 332 (1009)
..++++.||+|+|||+.+-.
T Consensus 207 ~~n~LLvGppGvGKT~lae~ 226 (758)
T PRK11034 207 KNNPLLVGESGVGKTAIAEG 226 (758)
T ss_pred CCCeEEECCCCCCHHHHHHH
Confidence 56889999999999966543
No 445
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=84.77 E-value=0.68 Score=47.57 Aligned_cols=21 Identities=33% Similarity=0.632 Sum_probs=17.1
Q ss_pred CCeEEEEecCCCchhhhHHHH
Q 001817 313 NQVVVVSGETGCGKTTQLPQY 333 (1009)
Q Consensus 313 ~~~vII~apTGSGKTt~~~~~ 333 (1009)
|+.+++.||+||||||.+-..
T Consensus 1 g~ii~l~G~~GsGKsTl~~~L 21 (180)
T TIGR03263 1 GLLIVISGPSGVGKSTLVKAL 21 (180)
T ss_pred CcEEEEECCCCCCHHHHHHHH
Confidence 467899999999999865443
No 446
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=84.44 E-value=1.5 Score=44.84 Aligned_cols=22 Identities=36% Similarity=0.599 Sum_probs=18.5
Q ss_pred HHcCCeEEEEecCCCchhhhHH
Q 001817 310 ISENQVVVVSGETGCGKTTQLP 331 (1009)
Q Consensus 310 l~~~~~vII~apTGSGKTt~~~ 331 (1009)
+..++.+.|.||.||||||.+-
T Consensus 25 i~~G~~~~l~G~nGsGKstLl~ 46 (171)
T cd03228 25 IKPGEKVAIVGPSGSGKSTLLK 46 (171)
T ss_pred EcCCCEEEEECCCCCCHHHHHH
Confidence 3578999999999999996543
No 447
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=84.44 E-value=2.8 Score=53.35 Aligned_cols=33 Identities=21% Similarity=0.428 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHH--------cCCeEEEEecCCCchhhhHHH
Q 001817 300 YKERDALLKAIS--------ENQVVVVSGETGCGKTTQLPQ 332 (1009)
Q Consensus 300 ~~~q~~il~~l~--------~~~~vII~apTGSGKTt~~~~ 332 (1009)
...++.|++.+. .+..+++.||+|+|||+.+-.
T Consensus 328 ~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ 368 (784)
T PRK10787 328 ERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQS 368 (784)
T ss_pred HHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHH
Confidence 344566665443 356899999999999965543
No 448
>smart00491 HELICc2 helicase superfamily c-terminal domain.
Probab=84.21 E-value=1.1 Score=44.45 Aligned_cols=75 Identities=19% Similarity=0.111 Sum_probs=44.4
Q ss_pred HhhcCCCCCCc---eEEEEecCc--cccccCCCC--eeEEEeCCCCccccccCCC----------C-CCcc--cccccCH
Q 001817 624 RLIFDKPEDGV---RKIVLATNM--AETSITIND--VVFVIDCGKAKETSYDALN----------N-TPCL--LPSWISK 683 (1009)
Q Consensus 624 ~~v~~~f~~G~---~kVLVATni--ae~GIdIp~--V~~VId~g~~k~~~yd~~~----------~-~~~l--~~~~iS~ 683 (1009)
..+++.|+... -.||+++.- ..+|||+|+ ++.||-.|+|--...|+.. + ...+ ...+-..
T Consensus 34 ~~~l~~f~~~~~~~g~iL~~v~~G~~~EGiD~~g~~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 113 (142)
T smart00491 34 EELLEKYSAACEARGALLLAVARGKVSEGIDFPDDLGRAVIIVGIPFPNPDSPILRARLEYLDEKGGIRPFDEVYLFDAM 113 (142)
T ss_pred HHHHHHHHHhcCCCCEEEEEEeCCeeecceecCCCccEEEEEEecCCCCCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 34444454332 258888876 999999996 5788888988533322210 0 0110 0112233
Q ss_pred HhHHhhhcccCCCCC
Q 001817 684 AAARQRRGRAGRVQP 698 (1009)
Q Consensus 684 as~~QR~GRAGR~~~ 698 (1009)
....|-+||+=|...
T Consensus 114 ~~~~Qa~GR~iR~~~ 128 (142)
T smart00491 114 RALAQAIGRAIRHKN 128 (142)
T ss_pred HHHHHHhCccccCcc
Confidence 456899999999865
No 449
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=83.93 E-value=5.7 Score=44.30 Aligned_cols=53 Identities=21% Similarity=0.157 Sum_probs=37.6
Q ss_pred HHHHHhcCCCCCCccEEEEeCCCcCCCcchHHHHHHHHHcccCCCCcEEEeccCC
Q 001817 402 LLRRLLVDRSLRGVTHVIVDEIHERGMNEDFLLIVLKELLPRRPELRLILMSATL 456 (1009)
Q Consensus 402 Ll~~L~~~~~l~~is~IIIDEaHeR~~~~d~ll~llk~ll~~~~~lkvIlmSATl 456 (1009)
+.+.+...+.-..++++|||+||. ++.+..-++||.+-.-.++..+|+.|...
T Consensus 83 l~~~~~~~p~e~~~kv~ii~~ad~--mt~~AaNaLLK~LEEPp~~~~fiL~~~~~ 135 (290)
T PRK05917 83 IKKQIWIHPYESPYKIYIIHEADR--MTLDAISAFLKVLEDPPQHGVIILTSAKP 135 (290)
T ss_pred HHHHHhhCccCCCceEEEEechhh--cCHHHHHHHHHHhhcCCCCeEEEEEeCCh
Confidence 445555556778899999999997 67777777787776644556666666653
No 450
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=83.92 E-value=2.7 Score=51.89 Aligned_cols=120 Identities=16% Similarity=0.056 Sum_probs=77.3
Q ss_pred CCCcEEEEcCCHhHHHHHHHHHHcCCCCCCCCCeEEEEecCCCCHHHHHhhcCCCCC----CceEEEEecCccccccCC-
Q 001817 576 RPGAVLVFMTGWDDINSLKDQLQAHPLLGDPSRVLLLACHGSMASSEQRLIFDKPED----GVRKIVLATNMAETSITI- 650 (1009)
Q Consensus 576 ~~g~iLVFl~~~~~i~~l~~~L~~~~~~~~~~~~~v~~lHs~l~~~er~~v~~~f~~----G~~kVLVATniae~GIdI- 650 (1009)
..|.+||.+++...++.+++.|.... .+ .+.+.|..+. +...++.|+. |...||++|+.+-+|||+
T Consensus 469 ~~G~~lvLfTS~~~~~~~~~~l~~~l------~~-~~l~qg~~~~--~~~l~~~f~~~~~~~~~~vL~gt~sfweGvDv~ 539 (636)
T TIGR03117 469 AQGGTLVLTTAFSHISAIGQLVELGI------PA-EIVIQSEKNR--LASAEQQFLALYANGIQPVLIAAGGAWTGIDLT 539 (636)
T ss_pred cCCCEEEEechHHHHHHHHHHHHhhc------CC-CEEEeCCCcc--HHHHHHHHHHhhcCCCCcEEEeCCccccccccC
Confidence 46899999999999999999997641 12 2345565432 2334455554 578999999999999999
Q ss_pred -------C--CeeEEEeCCCCccccccCC--------CCCCcccccccCHHhHHhhhcccCCCC----CCcEEEec
Q 001817 651 -------N--DVVFVIDCGKAKETSYDAL--------NNTPCLLPSWISKAAARQRRGRAGRVQ----PGECYHLY 705 (1009)
Q Consensus 651 -------p--~V~~VId~g~~k~~~yd~~--------~~~~~l~~~~iS~as~~QR~GRAGR~~----~G~c~~Ly 705 (1009)
| .+..||..-+|-.. -|+. .+...+...+-..-.++|-+||.=|.. .|....|=
T Consensus 540 ~~~~~p~~G~~Ls~ViI~kLPF~~-~dp~a~~~~~~~~g~~~f~~~p~a~i~lkQg~GRLIR~~~D~~~G~i~ilD 614 (636)
T TIGR03117 540 HKPVSPDKDNLLTDLIITCAPFGL-NRSLSMLKRIRKTSVRPWEIINESLMMLRQGLGRLVRHPDMPQNRRIHMLD 614 (636)
T ss_pred CccCCCCCCCcccEEEEEeCCCCc-CChHHHHHHHHhcCCChHhhhHHHHHHHHHhcCceeecCCCcCceEEEEEe
Confidence 3 46888877787432 2221 112222222333445678889888873 36555553
No 451
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=83.91 E-value=6.4 Score=45.79 Aligned_cols=23 Identities=30% Similarity=0.352 Sum_probs=18.8
Q ss_pred HHcCCeEEEEecCCCchhhhHHH
Q 001817 310 ISENQVVVVSGETGCGKTTQLPQ 332 (1009)
Q Consensus 310 l~~~~~vII~apTGSGKTt~~~~ 332 (1009)
--.+..|+|.|+||+||++.+-+
T Consensus 98 ap~~~~vLi~GetGtGKel~A~~ 120 (403)
T COG1221 98 APSGLPVLIIGETGTGKELFARL 120 (403)
T ss_pred CCCCCcEEEecCCCccHHHHHHH
Confidence 34678999999999999976654
No 452
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=83.76 E-value=1.2 Score=53.54 Aligned_cols=28 Identities=36% Similarity=0.583 Sum_probs=19.9
Q ss_pred HHHHHHHHc-CCeEEEEecCCCchhhhHH
Q 001817 304 DALLKAISE-NQVVVVSGETGCGKTTQLP 331 (1009)
Q Consensus 304 ~~il~~l~~-~~~vII~apTGSGKTt~~~ 331 (1009)
+.+..++.. +..++|+|||||||||..-
T Consensus 232 ~~l~~~~~~~~GlilitGptGSGKTTtL~ 260 (486)
T TIGR02533 232 SRFERLIRRPHGIILVTGPTGSGKTTTLY 260 (486)
T ss_pred HHHHHHHhcCCCEEEEEcCCCCCHHHHHH
Confidence 344444443 4578899999999998764
No 453
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=83.70 E-value=0.99 Score=50.08 Aligned_cols=29 Identities=28% Similarity=0.508 Sum_probs=20.6
Q ss_pred HHHHcCCeEEEEecCCCchhhhHHHHHHHH
Q 001817 308 KAISENQVVVVSGETGCGKTTQLPQYILES 337 (1009)
Q Consensus 308 ~~l~~~~~vII~apTGSGKTt~~~~~ile~ 337 (1009)
..|.-|+.+++.||+|+|||+ ....+.+.
T Consensus 172 nlIt~NRliLlhGPPGTGKTS-LCKaLaQk 200 (423)
T KOG0744|consen 172 NLITWNRLILLHGPPGTGKTS-LCKALAQK 200 (423)
T ss_pred ceeeeeeEEEEeCCCCCChhH-HHHHHHHh
Confidence 345568899999999999994 33344443
No 454
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=83.55 E-value=0.59 Score=51.69 Aligned_cols=19 Identities=32% Similarity=0.482 Sum_probs=15.3
Q ss_pred cCCeEEEEecCCCchhhhH
Q 001817 312 ENQVVVVSGETGCGKTTQL 330 (1009)
Q Consensus 312 ~~~~vII~apTGSGKTt~~ 330 (1009)
...|+++.||||||||+.+
T Consensus 96 ~KSNILLiGPTGsGKTlLA 114 (408)
T COG1219 96 SKSNILLIGPTGSGKTLLA 114 (408)
T ss_pred eeccEEEECCCCCcHHHHH
Confidence 4467899999999999544
No 455
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=83.39 E-value=1.9 Score=46.28 Aligned_cols=30 Identities=30% Similarity=0.419 Sum_probs=24.9
Q ss_pred HHHcCCeEEEEecCCCchhhhHHHHHHHHH
Q 001817 309 AISENQVVVVSGETGCGKTTQLPQYILESE 338 (1009)
Q Consensus 309 ~l~~~~~vII~apTGSGKTt~~~~~ile~~ 338 (1009)
-+..+..++|.|++|||||+.+.+++.+.+
T Consensus 16 Gi~~G~~~~i~G~~G~GKT~l~~~~~~~~~ 45 (229)
T TIGR03881 16 GIPRGFFVAVTGEPGTGKTIFCLHFAYKGL 45 (229)
T ss_pred CCcCCeEEEEECCCCCChHHHHHHHHHHHH
Confidence 345688999999999999998888877644
No 456
>PRK00300 gmk guanylate kinase; Provisional
Probab=83.38 E-value=0.84 Score=47.98 Aligned_cols=23 Identities=30% Similarity=0.612 Sum_probs=18.8
Q ss_pred cCCeEEEEecCCCchhhhHHHHH
Q 001817 312 ENQVVVVSGETGCGKTTQLPQYI 334 (1009)
Q Consensus 312 ~~~~vII~apTGSGKTt~~~~~i 334 (1009)
.++.++|+||+||||||.+-..+
T Consensus 4 ~g~~i~i~G~sGsGKstl~~~l~ 26 (205)
T PRK00300 4 RGLLIVLSGPSGAGKSTLVKALL 26 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHH
Confidence 57899999999999997665443
No 457
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=83.30 E-value=2.4 Score=52.74 Aligned_cols=36 Identities=33% Similarity=0.530 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHcC---CeEEEEecCCCchhhhHHHHHH
Q 001817 300 YKERDALLKAISEN---QVVVVSGETGCGKTTQLPQYIL 335 (1009)
Q Consensus 300 ~~~q~~il~~l~~~---~~vII~apTGSGKTt~~~~~il 335 (1009)
+.-+..+++.+..+ +.++|++|-|+||||.+.+++.
T Consensus 21 ~v~R~rL~~~L~~~~~~RL~li~APAGfGKttl~aq~~~ 59 (894)
T COG2909 21 YVVRPRLLDRLRRANDYRLILISAPAGFGKTTLLAQWRE 59 (894)
T ss_pred ccccHHHHHHHhcCCCceEEEEeCCCCCcHHHHHHHHHH
Confidence 45567777777654 7899999999999999999975
No 458
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription]
Probab=83.18 E-value=3.7 Score=51.29 Aligned_cols=126 Identities=19% Similarity=0.213 Sum_probs=84.4
Q ss_pred HHHHHHhh--cCCCcEEEEcCCHhHHHHHHHHHHcCCCCCC---------------CCCeEEEEecCCCCHHHHHhhcCC
Q 001817 567 VLCHIVKK--ERPGAVLVFMTGWDDINSLKDQLQAHPLLGD---------------PSRVLLLACHGSMASSEQRLIFDK 629 (1009)
Q Consensus 567 ll~~i~~~--~~~g~iLVFl~~~~~i~~l~~~L~~~~~~~~---------------~~~~~v~~lHs~l~~~er~~v~~~ 629 (1009)
+|..|++. .-+.+.|||-.+.....-+..+|......+. ..+..-+-+.|..+..+|++.-+.
T Consensus 1130 LLleIL~mceeIGDKlLVFSQSL~SLdLIe~fLe~v~r~gk~~~d~~~~~~~eGkW~~GkDyyriDGst~s~~R~k~~~~ 1209 (1567)
T KOG1015|consen 1130 LLLEILRMCEEIGDKLLVFSQSLISLDLIEDFLELVSREGKEDKDKPLIYKGEGKWLRGKDYYRLDGSTTSQSRKKWAEE 1209 (1567)
T ss_pred hHHHHHHHHHHhcceeEEeecccchhHHHHHHHHhhcccCccccccccccccccceecCCceEEecCcccHHHHHHHHHH
Confidence 44455443 2356999998887777766666653221111 123346678899999999998877
Q ss_pred CCCC----ceEEEEecCccccccCCCCeeEEEeCCCCccccccCCCCCCcccccccCHHhHHhhhcccCCCCCCcEEEec
Q 001817 630 PEDG----VRKIVLATNMAETSITINDVVFVIDCGKAKETSYDALNNTPCLLPSWISKAAARQRRGRAGRVQPGECYHLY 705 (1009)
Q Consensus 630 f~~G----~~kVLVATniae~GIdIp~V~~VId~g~~k~~~yd~~~~~~~l~~~~iS~as~~QR~GRAGR~~~G~c~~Ly 705 (1009)
|..- .+-.||+|-....|||+=..+-||.++.. |+|...+ +.+=|+=|-|...|-..|||+
T Consensus 1210 FNdp~NlRaRl~LISTRAGsLGiNLvAANRVIIfDas----WNPSyDt-----------QSIFRvyRfGQtKPvyiYRfi 1274 (1567)
T KOG1015|consen 1210 FNDPTNLRARLFLISTRAGSLGINLVAANRVIIFDAS----WNPSYDT-----------QSIFRVYRFGQTKPVYIYRFI 1274 (1567)
T ss_pred hcCcccceeEEEEEeeccCccccceeecceEEEEecc----cCCccch-----------HHHHHHHhhcCcCceeehhhh
Confidence 7642 35578999999999999988888774443 2222222 333577788888888899986
Q ss_pred ch
Q 001817 706 PR 707 (1009)
Q Consensus 706 s~ 707 (1009)
-.
T Consensus 1275 Aq 1276 (1567)
T KOG1015|consen 1275 AQ 1276 (1567)
T ss_pred hc
Confidence 54
No 459
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=83.16 E-value=1.3 Score=50.00 Aligned_cols=32 Identities=28% Similarity=0.428 Sum_probs=26.2
Q ss_pred HHHHHHHHcCCeEEEEecCCCchhhhHHHHHH
Q 001817 304 DALLKAISENQVVVVSGETGCGKTTQLPQYIL 335 (1009)
Q Consensus 304 ~~il~~l~~~~~vII~apTGSGKTt~~~~~il 335 (1009)
..++.++..++.+++.|++|||||+.+-+...
T Consensus 55 ~~vl~~l~~~~~ilL~G~pGtGKTtla~~lA~ 86 (327)
T TIGR01650 55 KAICAGFAYDRRVMVQGYHGTGKSTHIEQIAA 86 (327)
T ss_pred HHHHHHHhcCCcEEEEeCCCChHHHHHHHHHH
Confidence 44777788899999999999999987766554
No 460
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=83.07 E-value=7.7 Score=37.13 Aligned_cols=36 Identities=28% Similarity=0.403 Sum_probs=23.0
Q ss_pred EEEEecCCCchhhhHHHHHHHHHHHHhcCCceEEEechh
Q 001817 316 VVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQP 354 (1009)
Q Consensus 316 vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~IvvtqP 354 (1009)
++++|..|+|||+.+...... +.. .+....++-+-|
T Consensus 2 i~~~GkgG~GKTt~a~~la~~-l~~--~g~~V~~id~D~ 37 (116)
T cd02034 2 IAITGKGGVGKTTIAALLARY-LAE--KGKPVLAIDADP 37 (116)
T ss_pred EEEECCCCCCHHHHHHHHHHH-HHH--CCCcEEEEECCc
Confidence 678999999999876655433 222 344445555556
No 461
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=83.04 E-value=5.8 Score=48.60 Aligned_cols=106 Identities=16% Similarity=0.234 Sum_probs=59.3
Q ss_pred CHHHHHHHHHHHH--------cCCeEEEEecCCCchhhhHHHHHHHHHHHHhcCCceEEEechhHHHHHHHHHHHHHHHh
Q 001817 299 SYKERDALLKAIS--------ENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAER 370 (1009)
Q Consensus 299 i~~~q~~il~~l~--------~~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~IvvtqPrR~La~qva~rva~e~ 370 (1009)
....++.|++.|. +|+.+.++||+|-|||..+ .++|+.+..++
T Consensus 416 m~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~-----------------------------kSIA~ALnRkF 466 (906)
T KOG2004|consen 416 MEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIA-----------------------------KSIARALNRKF 466 (906)
T ss_pred hHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHH-----------------------------HHHHHHhCCce
Confidence 3455778888774 5788999999999999332 12222221111
Q ss_pred -CCcccceeeeeeeeccccCCCcEE-EEEccHHHHHHHhcCCCCCCccEEEEeCCCc--CCCcchHHHHHHHHH
Q 001817 371 -GEKLGESVGYKVRLEGMKGRDTRL-MFCTTGILLRRLLVDRSLRGVTHVIVDEIHE--RGMNEDFLLIVLKEL 440 (1009)
Q Consensus 371 -~~~~g~~vGy~vr~e~~~~~~t~I-iv~T~g~Ll~~L~~~~~l~~is~IIIDEaHe--R~~~~d~ll~llk~l 440 (1009)
...+|.... ........+- +=+-||.+.+.|..-..- =-+|.|||++. +|...|-.-++|.-+
T Consensus 467 fRfSvGG~tD-----vAeIkGHRRTYVGAMPGkiIq~LK~v~t~--NPliLiDEvDKlG~g~qGDPasALLElL 533 (906)
T KOG2004|consen 467 FRFSVGGMTD-----VAEIKGHRRTYVGAMPGKIIQCLKKVKTE--NPLILIDEVDKLGSGHQGDPASALLELL 533 (906)
T ss_pred EEEecccccc-----HHhhcccceeeeccCChHHHHHHHhhCCC--CceEEeehhhhhCCCCCCChHHHHHHhc
Confidence 122232211 1111111122 334589999888643211 13688999996 556777666666544
No 462
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=83.01 E-value=0.95 Score=44.33 Aligned_cols=20 Identities=35% Similarity=0.476 Sum_probs=15.6
Q ss_pred eEEEEecCCCchhhhHHHHH
Q 001817 315 VVVVSGETGCGKTTQLPQYI 334 (1009)
Q Consensus 315 ~vII~apTGSGKTt~~~~~i 334 (1009)
.|++.||+|+|||+.+-.+.
T Consensus 1 ~vlL~G~~G~GKt~l~~~la 20 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELA 20 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHH
Confidence 47899999999996655443
No 463
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=82.96 E-value=2.1 Score=48.77 Aligned_cols=51 Identities=18% Similarity=0.280 Sum_probs=32.2
Q ss_pred HHHHHHhcCCCCCCccEEEEeCCCcCCCcchHHHHHHHHHcccCCCCcEEEec
Q 001817 401 ILLRRLLVDRSLRGVTHVIVDEIHERGMNEDFLLIVLKELLPRRPELRLILMS 453 (1009)
Q Consensus 401 ~Ll~~L~~~~~l~~is~IIIDEaHeR~~~~d~ll~llk~ll~~~~~lkvIlmS 453 (1009)
.+.+.+...+.....+++|+|++|. ++......+++.+-...++..+|+.|
T Consensus 100 ~l~~~~~~~p~~~~~kV~iiEp~~~--Ld~~a~naLLk~LEep~~~~~~Ilvt 150 (325)
T PRK08699 100 EIIDNVYLTSVRGGLRVILIHPAES--MNLQAANSLLKVLEEPPPQVVFLLVS 150 (325)
T ss_pred HHHHHHhhCcccCCceEEEEechhh--CCHHHHHHHHHHHHhCcCCCEEEEEe
Confidence 3455555566678899999999996 66666666666554332334445533
No 464
>PF01580 FtsK_SpoIIIE: FtsK/SpoIIIE family; InterPro: IPR002543 The FtsK/SpoIIIE domain is found extensively in a wide variety of proteins from prokaryotes and plasmids [] some of which contain up to three copies.The domain contains a putative ATP binding P-loop motif. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification []. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer []. ; GO: 0000166 nucleotide binding, 0003677 DNA binding, 0005524 ATP binding, 0007049 cell cycle, 0007059 chromosome segregation, 0051301 cell division, 0016021 integral to membrane; PDB: 2IUS_E 2IUU_A 2IUT_A.
Probab=82.95 E-value=1.3 Score=46.56 Aligned_cols=43 Identities=23% Similarity=0.393 Sum_probs=23.7
Q ss_pred HcCCeEEEEecCCCchhhhHHHHHHHHHHHHhcCCceEEEechh
Q 001817 311 SENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQP 354 (1009)
Q Consensus 311 ~~~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~IvvtqP 354 (1009)
..+.+++|.|.||||||+.+--.+...+. ........++++-|
T Consensus 36 ~~~~h~li~G~tgsGKS~~l~~ll~~l~~-~~~p~~~~l~iiD~ 78 (205)
T PF01580_consen 36 KKNPHLLIAGATGSGKSTLLRTLLLSLAL-TYSPDDVQLYIIDP 78 (205)
T ss_dssp GGS-SEEEE--TTSSHHHHHHHHHHHHHT-T--TTTEEEEEE-T
T ss_pred CCCceEEEEcCCCCCccHHHHHHHHHHHH-HhcCCccEEEEEcC
Confidence 45568999999999999766655544332 22234455655443
No 465
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=82.91 E-value=2.1 Score=51.47 Aligned_cols=18 Identities=39% Similarity=0.641 Sum_probs=15.0
Q ss_pred CCeEEEEecCCCchhhhH
Q 001817 313 NQVVVVSGETGCGKTTQL 330 (1009)
Q Consensus 313 ~~~vII~apTGSGKTt~~ 330 (1009)
.+.+++.||+|||||+.+
T Consensus 216 p~GILLyGPPGTGKT~LA 233 (512)
T TIGR03689 216 PKGVLLYGPPGCGKTLIA 233 (512)
T ss_pred CcceEEECCCCCcHHHHH
Confidence 456899999999999644
No 466
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=82.79 E-value=2.6 Score=52.50 Aligned_cols=68 Identities=18% Similarity=0.218 Sum_probs=44.8
Q ss_pred CCHHHHHHHHHH---HHcC-CeEEEEecCCCchhhhHHHHHHHHHHHHhcCCceEEEechhHHHHHHHHHHHHHHHhCCc
Q 001817 298 PSYKERDALLKA---ISEN-QVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERGEK 373 (1009)
Q Consensus 298 Pi~~~q~~il~~---l~~~-~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~IvvtqPrR~La~qva~rva~e~~~~ 373 (1009)
|.-.|..+|-.. +.++ +..++.|-||||||..+...+.+ .+ ..++|++|.+.+|.|++..+...++..
T Consensus 10 ~~~~Q~~ai~~l~~~~~~~~~~~~l~Gvtgs~kt~~~a~~~~~------~~--~p~Lvi~~n~~~A~ql~~el~~f~p~~ 81 (655)
T TIGR00631 10 PAGDQPKAIAKLVEGLTDGEKHQTLLGVTGSGKTFTMANVIAQ------VN--RPTLVIAHNKTLAAQLYNEFKEFFPEN 81 (655)
T ss_pred CChHHHHHHHHHHHhhhcCCCcEEEECCCCcHHHHHHHHHHHH------hC--CCEEEEECCHHHHHHHHHHHHHhCCCC
Confidence 554554444433 3333 24568999999999666543321 12 235666699999999999998887654
No 467
>PRK05580 primosome assembly protein PriA; Validated
Probab=82.76 E-value=1.7 Score=54.62 Aligned_cols=74 Identities=15% Similarity=0.229 Sum_probs=59.7
Q ss_pred CCcEEEEcCCHhHHHHHHHHHHcCCCCCCCCCeEEEEecCCCCHHHHHhhcCCCCCCceEEEEecCccccccCCCCeeEE
Q 001817 577 PGAVLVFMTGWDDINSLKDQLQAHPLLGDPSRVLLLACHGSMASSEQRLIFDKPEDGVRKIVLATNMAETSITINDVVFV 656 (1009)
Q Consensus 577 ~g~iLVFl~~~~~i~~l~~~L~~~~~~~~~~~~~v~~lHs~l~~~er~~v~~~f~~G~~kVLVATniae~GIdIp~V~~V 656 (1009)
++++||.+|+++.+..+.+.+++. + +..+..+||+++..+|...+.....|..+|||+|.-+-. +.+.++..|
T Consensus 190 g~~vLvLvPt~~L~~Q~~~~l~~~--f----g~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal~-~p~~~l~li 262 (679)
T PRK05580 190 GKQALVLVPEIALTPQMLARFRAR--F----GAPVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSALF-LPFKNLGLI 262 (679)
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHH--h----CCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHhc-ccccCCCEE
Confidence 468999999999999999999864 2 345889999999999999888888999999999975432 455677555
Q ss_pred E
Q 001817 657 I 657 (1009)
Q Consensus 657 I 657 (1009)
|
T Consensus 263 V 263 (679)
T PRK05580 263 I 263 (679)
T ss_pred E
Confidence 4
No 468
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=82.51 E-value=4.1 Score=50.99 Aligned_cols=120 Identities=21% Similarity=0.233 Sum_probs=63.8
Q ss_pred CeEEEEecCCCchhhhHHHHHHHHHHHHhcCCceEEEechhHHHHHHHHHHHHHHHhCCcccceeeeeeeeccccCCCcE
Q 001817 314 QVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERGEKLGESVGYKVRLEGMKGRDTR 393 (1009)
Q Consensus 314 ~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~IvvtqPrR~La~qva~rva~e~~~~~g~~vGy~vr~e~~~~~~t~ 393 (1009)
.+.+..||||.|||-.+-+ +.+.+. .+....|=+ -.-+-. =...|++..|.+ ...|||...
T Consensus 522 gsFlF~GPTGVGKTELAka-LA~~Lf---g~e~aliR~--DMSEy~--EkHsVSrLIGaP-PGYVGyeeG---------- 582 (786)
T COG0542 522 GSFLFLGPTGVGKTELAKA-LAEALF---GDEQALIRI--DMSEYM--EKHSVSRLIGAP-PGYVGYEEG---------- 582 (786)
T ss_pred eEEEeeCCCcccHHHHHHH-HHHHhc---CCCccceee--chHHHH--HHHHHHHHhCCC-CCCceeccc----------
Confidence 3688899999999965543 333332 112223333 111111 112333334443 345776542
Q ss_pred EEEEccHHHHHHHhcCCCCCCccEEEEeCCCcCCCcchHHHHHHHHHcccC--------CCC--cEEEeccCCCHHHHHh
Q 001817 394 LMFCTTGILLRRLLVDRSLRGVTHVIVDEIHERGMNEDFLLIVLKELLPRR--------PEL--RLILMSATLNAELFSS 463 (1009)
Q Consensus 394 Iiv~T~g~Ll~~L~~~~~l~~is~IIIDEaHeR~~~~d~ll~llk~ll~~~--------~~l--kvIlmSATl~~~~~~~ 463 (1009)
|.|...+.+. -|++|.+||+.. .+.|++-.+|..+-.-+ -++ -+|+||.-+..+.+.+
T Consensus 583 ------G~LTEaVRr~----PySViLlDEIEK--AHpdV~nilLQVlDdGrLTD~~Gr~VdFrNtiIImTSN~Gs~~i~~ 650 (786)
T COG0542 583 ------GQLTEAVRRK----PYSVILLDEIEK--AHPDVFNLLLQVLDDGRLTDGQGRTVDFRNTIIIMTSNAGSEEILR 650 (786)
T ss_pred ------cchhHhhhcC----CCeEEEechhhh--cCHHHHHHHHHHhcCCeeecCCCCEEecceeEEEEecccchHHHHh
Confidence 2344444444 378999999986 67776665555442211 011 2777877776665544
Q ss_pred h
Q 001817 464 Y 464 (1009)
Q Consensus 464 y 464 (1009)
.
T Consensus 651 ~ 651 (786)
T COG0542 651 D 651 (786)
T ss_pred h
Confidence 4
No 469
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=82.48 E-value=0.78 Score=49.06 Aligned_cols=22 Identities=36% Similarity=0.631 Sum_probs=18.9
Q ss_pred HHcCCeEEEEecCCCchhhhHH
Q 001817 310 ISENQVVVVSGETGCGKTTQLP 331 (1009)
Q Consensus 310 l~~~~~vII~apTGSGKTt~~~ 331 (1009)
+..|..+.|.||+||||||..-
T Consensus 28 i~~Ge~vaI~GpSGSGKSTLLn 49 (226)
T COG1136 28 IEAGEFVAIVGPSGSGKSTLLN 49 (226)
T ss_pred EcCCCEEEEECCCCCCHHHHHH
Confidence 4678999999999999997653
No 470
>PHA00149 DNA encapsidation protein
Probab=82.45 E-value=13 Score=40.92 Aligned_cols=142 Identities=19% Similarity=0.233 Sum_probs=80.1
Q ss_pred EEEecCCCchhhhHHHHHHHHHHHHhcCCceEEEechhHH-HHHHHHHHHHHHHhCCcccceeeeeeeeccccCCCcEEE
Q 001817 317 VVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRR-ISAMAVSERVAAERGEKLGESVGYKVRLEGMKGRDTRLM 395 (1009)
Q Consensus 317 II~apTGSGKTt~~~~~ile~~~~~~~~~~~~IvvtqPrR-~La~qva~rva~e~~~~~g~~vGy~vr~e~~~~~~t~Ii 395 (1009)
.|.|.-|-|||.++--.++...+..+ -..|++--.. ++.. ....++.+.-+.+.. -+.+......-..-.|-
T Consensus 21 fviG~RgiGKTya~k~~~~k~~i~kg----eqfiYLRr~k~El~~-k~~Ff~d~~~~~~~~--~F~Vkg~ki~~~~k~ig 93 (331)
T PHA00149 21 FVIGARGIGKTYALKKYLIKRFIKKG----EQFIYLRRYKSELKK-KSKFFADIAQEFPNT--EFEVKGRKIYIKGKLIG 93 (331)
T ss_pred EEEeccccchhhHHHHHHHHHHHhcC----cEEEEEEecchhhhh-hhhhhHHHHHhCCCC--ceEEEccEEEEcCeEEE
Confidence 45699999999999888888877633 2444432111 2211 233344433222111 11121111111233444
Q ss_pred EEccHHHHHHHhcCCCCCCccEEEEeCCCc-C------CCcchHHHHHHHHHcccCCCCcEEEeccCC-CHHHHHhhhC
Q 001817 396 FCTTGILLRRLLVDRSLRGVTHVIVDEIHE-R------GMNEDFLLIVLKELLPRRPELRLILMSATL-NAELFSSYFG 466 (1009)
Q Consensus 396 v~T~g~Ll~~L~~~~~l~~is~IIIDEaHe-R------~~~~d~ll~llk~ll~~~~~lkvIlmSATl-~~~~~~~yf~ 466 (1009)
+.-|=.-+..+. .....++.+|++||+-. + .-..+.++.++..+.+.+.+++++.+|-.. ..+-+-.||+
T Consensus 94 y~i~LS~~q~~K-s~~Yp~V~~I~fDEfi~dk~n~~YlpNE~~allnli~tV~R~Re~vr~~~lsNa~~~~NPyF~yfg 171 (331)
T PHA00149 94 YAIPLSTWQALK-SSAYPNVSTIFFDEFIREKDNKRYLPNEVDALLNLIDTVFRARERVRCICLSNAVSIVNPYFLYFG 171 (331)
T ss_pred EEEehhhHHhhc-ccCCCceEEEEeeeeeecCcccccCCchHHHHHHHHHHHHHhhcCeEEEEEcCcccccchhhheec
Confidence 555533333333 33678999999999973 2 123346777888888888899999999775 3344445554
No 471
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=82.40 E-value=0.9 Score=44.81 Aligned_cols=18 Identities=44% Similarity=0.774 Sum_probs=14.4
Q ss_pred EEEEecCCCchhhhHHHH
Q 001817 316 VVVSGETGCGKTTQLPQY 333 (1009)
Q Consensus 316 vII~apTGSGKTt~~~~~ 333 (1009)
++|+||||||||+.+-..
T Consensus 2 i~i~GpsGsGKstl~~~L 19 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRL 19 (137)
T ss_pred EEEECCCCCCHHHHHHHH
Confidence 678999999999755443
No 472
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=82.22 E-value=1.5 Score=44.86 Aligned_cols=22 Identities=27% Similarity=0.492 Sum_probs=18.4
Q ss_pred HHcCCeEEEEecCCCchhhhHH
Q 001817 310 ISENQVVVVSGETGCGKTTQLP 331 (1009)
Q Consensus 310 l~~~~~vII~apTGSGKTt~~~ 331 (1009)
+..++.+.|.||.||||||.+-
T Consensus 25 i~~Ge~~~i~G~nGsGKStLl~ 46 (173)
T cd03246 25 IEPGESLAIIGPSGSGKSTLAR 46 (173)
T ss_pred ECCCCEEEEECCCCCCHHHHHH
Confidence 3578999999999999997554
No 473
>PLN02165 adenylate isopentenyltransferase
Probab=82.02 E-value=0.98 Score=51.12 Aligned_cols=49 Identities=29% Similarity=0.365 Sum_probs=29.0
Q ss_pred ChhhHHHHHhhcCCCCHHHHHH----HHHHHHcCCeEEEEecCCCchhhhHHH
Q 001817 284 SPEGQKMLEFRRSLPSYKERDA----LLKAISENQVVVVSGETGCGKTTQLPQ 332 (1009)
Q Consensus 284 ~~~~~~l~~~r~~LPi~~~q~~----il~~l~~~~~vII~apTGSGKTt~~~~ 332 (1009)
+|.+..+-.-|..||......+ ....-..+.+++|.||||||||+.+..
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iivIiGPTGSGKStLA~~ 62 (334)
T PLN02165 10 SPPLLPITIPRRKLPPPRSVVTMTSVAMEQNCKDKVVVIMGATGSGKSRLSVD 62 (334)
T ss_pred CCCcCccccccccCCCCcccccccccccccCCCCCEEEEECCCCCcHHHHHHH
Confidence 3444445555666665432111 111123467899999999999977755
No 474
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=81.72 E-value=2.5 Score=53.65 Aligned_cols=22 Identities=27% Similarity=0.332 Sum_probs=17.4
Q ss_pred HcCCeEEEEecCCCchhhhHHH
Q 001817 311 SENQVVVVSGETGCGKTTQLPQ 332 (1009)
Q Consensus 311 ~~~~~vII~apTGSGKTt~~~~ 332 (1009)
...+.+++.||+|||||+.+-.
T Consensus 210 ~~~~giLL~GppGtGKT~lara 231 (733)
T TIGR01243 210 EPPKGVLLYGPPGTGKTLLAKA 231 (733)
T ss_pred CCCceEEEECCCCCChHHHHHH
Confidence 3457899999999999966543
No 475
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.61 E-value=9.2 Score=43.69 Aligned_cols=136 Identities=18% Similarity=0.266 Sum_probs=81.2
Q ss_pred cCCeEEEEecCCCchhhhHHHHHHHHHHHHhcCCceEEEechhHHHHHHHHHHHHHHHhCCcccceeeeeeeeccccCCC
Q 001817 312 ENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERGEKLGESVGYKVRLEGMKGRD 391 (1009)
Q Consensus 312 ~~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~IvvtqPrR~La~qva~rva~e~~~~~g~~vGy~vr~e~~~~~~ 391 (1009)
...+++++|=-|+||||...-+.... ..+|..+.++|----|+.|...-+..+...+.++ +| .+. +.
T Consensus 100 kpsVimfVGLqG~GKTTtc~KlA~y~---kkkG~K~~LvcaDTFRagAfDQLkqnA~k~~iP~---yg---syt----e~ 166 (483)
T KOG0780|consen 100 KPSVIMFVGLQGSGKTTTCTKLAYYY---KKKGYKVALVCADTFRAGAFDQLKQNATKARVPF---YG---SYT----EA 166 (483)
T ss_pred CCcEEEEEeccCCCcceeHHHHHHHH---HhcCCceeEEeecccccchHHHHHHHhHhhCCee---Ee---ccc----cc
Confidence 34578889999999999887766542 2467778888877778877655544444333322 11 110 00
Q ss_pred cEEEEEccHHHHHHHhcCCCCCCccEEEEeCCCcCCCcchHHHHHHHHHcccCCCCcEEEeccCC--CHHHHHhhhC
Q 001817 392 TRLMFCTTGILLRRLLVDRSLRGVTHVIVDEIHERGMNEDFLLIVLKELLPRRPELRLILMSATL--NAELFSSYFG 466 (1009)
Q Consensus 392 t~Iiv~T~g~Ll~~L~~~~~l~~is~IIIDEaHeR~~~~d~ll~llk~ll~~~~~lkvIlmSATl--~~~~~~~yf~ 466 (1009)
-.+.|+.-|+ +. ..-.++++||+|=.-....+..++..++...-...|+.-+..|-|++ .++..+.-|.
T Consensus 167 dpv~ia~egv--~~----fKke~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiGQaae~Qa~aFk 237 (483)
T KOG0780|consen 167 DPVKIASEGV--DR----FKKENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIGQAAEAQARAFK 237 (483)
T ss_pred chHHHHHHHH--HH----HHhcCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccccHhHHHHHHHHH
Confidence 0112222221 11 23468899999998744455555555444444467888889999998 4444444443
No 476
>PRK08233 hypothetical protein; Provisional
Probab=81.56 E-value=1 Score=46.06 Aligned_cols=22 Identities=23% Similarity=0.447 Sum_probs=17.9
Q ss_pred CCeEEEEecCCCchhhhHHHHH
Q 001817 313 NQVVVVSGETGCGKTTQLPQYI 334 (1009)
Q Consensus 313 ~~~vII~apTGSGKTt~~~~~i 334 (1009)
...+.|.|++||||||++-...
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~ 24 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLT 24 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHH
Confidence 3578889999999999886544
No 477
>PRK14530 adenylate kinase; Provisional
Probab=81.54 E-value=1.1 Score=47.76 Aligned_cols=23 Identities=26% Similarity=0.424 Sum_probs=19.0
Q ss_pred cCCeEEEEecCCCchhhhHHHHH
Q 001817 312 ENQVVVVSGETGCGKTTQLPQYI 334 (1009)
Q Consensus 312 ~~~~vII~apTGSGKTt~~~~~i 334 (1009)
.+..++|.|++||||||++-...
T Consensus 2 ~~~~I~i~G~pGsGKsT~~~~La 24 (215)
T PRK14530 2 SQPRILLLGAPGAGKGTQSSNLA 24 (215)
T ss_pred CCCEEEEECCCCCCHHHHHHHHH
Confidence 35678999999999999887654
No 478
>PRK14729 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Provisional
Probab=81.41 E-value=1.1 Score=50.14 Aligned_cols=22 Identities=36% Similarity=0.626 Sum_probs=17.3
Q ss_pred cCCeEEEEecCCCchhhhHHHH
Q 001817 312 ENQVVVVSGETGCGKTTQLPQY 333 (1009)
Q Consensus 312 ~~~~vII~apTGSGKTt~~~~~ 333 (1009)
.++.++|+||||||||-.+...
T Consensus 3 ~~~ii~I~GpTasGKS~LAl~L 24 (300)
T PRK14729 3 ENKIVFIFGPTAVGKSNILFHF 24 (300)
T ss_pred CCcEEEEECCCccCHHHHHHHH
Confidence 4578999999999999655433
No 479
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=81.32 E-value=6.1 Score=48.24 Aligned_cols=28 Identities=29% Similarity=0.382 Sum_probs=20.7
Q ss_pred HHHHHHHHcCCeEEEEecCCCchhhhHH
Q 001817 304 DALLKAISENQVVVVSGETGCGKTTQLP 331 (1009)
Q Consensus 304 ~~il~~l~~~~~vII~apTGSGKTt~~~ 331 (1009)
+.+-.+...+..|+|.|+|||||++.+-
T Consensus 210 ~~~~~~a~~~~pvli~Ge~GtGK~~lA~ 237 (534)
T TIGR01817 210 DQARVVARSNSTVLLRGESGTGKELIAK 237 (534)
T ss_pred HHHHHHhCcCCCEEEECCCCccHHHHHH
Confidence 3444444567889999999999996553
No 480
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=81.25 E-value=1.8 Score=51.82 Aligned_cols=18 Identities=39% Similarity=0.660 Sum_probs=14.5
Q ss_pred CCeEEEEecCCCchhhhH
Q 001817 313 NQVVVVSGETGCGKTTQL 330 (1009)
Q Consensus 313 ~~~vII~apTGSGKTt~~ 330 (1009)
..-++++||+|||||+.+
T Consensus 545 PsGvLL~GPPGCGKTLlA 562 (802)
T KOG0733|consen 545 PSGVLLCGPPGCGKTLLA 562 (802)
T ss_pred CCceEEeCCCCccHHHHH
Confidence 456889999999999543
No 481
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=81.19 E-value=7.8 Score=43.97 Aligned_cols=20 Identities=30% Similarity=0.383 Sum_probs=16.2
Q ss_pred HcCCeEEEEecCCCchhhhH
Q 001817 311 SENQVVVVSGETGCGKTTQL 330 (1009)
Q Consensus 311 ~~~~~vII~apTGSGKTt~~ 330 (1009)
..-+-|++.||+|+|||+.+
T Consensus 183 ~PPKGVLLYGPPGTGKTLLA 202 (406)
T COG1222 183 DPPKGVLLYGPPGTGKTLLA 202 (406)
T ss_pred CCCCceEeeCCCCCcHHHHH
Confidence 45677999999999999443
No 482
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=81.08 E-value=2.7 Score=53.14 Aligned_cols=19 Identities=37% Similarity=0.485 Sum_probs=15.8
Q ss_pred eEEEEecCCCchhhhHHHH
Q 001817 315 VVVVSGETGCGKTTQLPQY 333 (1009)
Q Consensus 315 ~vII~apTGSGKTt~~~~~ 333 (1009)
.++++||||+|||+.+-..
T Consensus 490 ~~Lf~GP~GvGKT~lAk~L 508 (758)
T PRK11034 490 SFLFAGPTGVGKTEVTVQL 508 (758)
T ss_pred eEEEECCCCCCHHHHHHHH
Confidence 6899999999999777533
No 483
>COG5008 PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=81.08 E-value=1 Score=48.54 Aligned_cols=40 Identities=25% Similarity=0.454 Sum_probs=26.1
Q ss_pred HHcCCeEEEEecCCCchhhhHHHHHHHHHHHHhcCCceEEEech
Q 001817 310 ISENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQ 353 (1009)
Q Consensus 310 l~~~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~Ivvtq 353 (1009)
+.+..-+|++|+|||||||...-.+-. +.....+-|+-+.
T Consensus 124 ~~kRGLviiVGaTGSGKSTtmAaMi~y----RN~~s~gHIiTIE 163 (375)
T COG5008 124 LAKRGLVIIVGATGSGKSTTMAAMIGY----RNKNSTGHIITIE 163 (375)
T ss_pred cccCceEEEECCCCCCchhhHHHHhcc----cccCCCCceEEec
Confidence 456778999999999999876544322 1233445566543
No 484
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=81.07 E-value=2.9 Score=50.56 Aligned_cols=74 Identities=16% Similarity=0.239 Sum_probs=59.1
Q ss_pred CCcEEEEcCCHhHHHHHHHHHHcCCCCCCCCCeEEEEecCCCCHHHHHhhcCCCCCCceEEEEecCccccccCCCCeeEE
Q 001817 577 PGAVLVFMTGWDDINSLKDQLQAHPLLGDPSRVLLLACHGSMASSEQRLIFDKPEDGVRKIVLATNMAETSITINDVVFV 656 (1009)
Q Consensus 577 ~g~iLVFl~~~~~i~~l~~~L~~~~~~~~~~~~~v~~lHs~l~~~er~~v~~~f~~G~~kVLVATniae~GIdIp~V~~V 656 (1009)
++.+||.+|+..-+..+++.|++. + +..+..+||+++..+|.++.....+|..+|||+|..+-. ..++++..|
T Consensus 25 g~~vLvlvP~i~L~~Q~~~~l~~~--f----~~~v~vlhs~~~~~er~~~~~~~~~g~~~IVVGTrsalf-~p~~~l~lI 97 (505)
T TIGR00595 25 GKSVLVLVPEIALTPQMIQRFKYR--F----GSQVAVLHSGLSDSEKLQAWRKVKNGEILVVIGTRSALF-LPFKNLGLI 97 (505)
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHH--h----CCcEEEEECCCCHHHHHHHHHHHHcCCCCEEECChHHHc-CcccCCCEE
Confidence 468999999999999999999864 2 234778999999999999888888999999999975432 345677555
Q ss_pred E
Q 001817 657 I 657 (1009)
Q Consensus 657 I 657 (1009)
|
T Consensus 98 I 98 (505)
T TIGR00595 98 I 98 (505)
T ss_pred E
Confidence 5
No 485
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=81.00 E-value=0.92 Score=42.77 Aligned_cols=23 Identities=26% Similarity=0.410 Sum_probs=19.2
Q ss_pred HcCCeEEEEecCCCchhhhHHHH
Q 001817 311 SENQVVVVSGETGCGKTTQLPQY 333 (1009)
Q Consensus 311 ~~~~~vII~apTGSGKTt~~~~~ 333 (1009)
..++.+.|.||+||||||.+...
T Consensus 13 ~~ge~v~I~GpSGsGKSTLl~~l 35 (107)
T cd00820 13 YGKVGVLITGDSGIGKTELALEL 35 (107)
T ss_pred cCCEEEEEEcCCCCCHHHHHHHh
Confidence 45788999999999999877654
No 486
>TIGR02784 addA_alphas double-strand break repair helicase AddA, alphaproteobacterial type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the alphaproteobacteria (as modeled here) and the Firmicutes, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=80.99 E-value=2.4 Score=56.64 Aligned_cols=61 Identities=25% Similarity=0.319 Sum_probs=48.3
Q ss_pred HHHcCCeEEEEecCCCchhhhHHHHHHHHHHHHhcCCceEEEechhHHHHHHHHHHHHHHHhC
Q 001817 309 AISENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERG 371 (1009)
Q Consensus 309 ~l~~~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~IvvtqPrR~La~qva~rva~e~~ 371 (1009)
++.-.+.++|.|+-|||||+....-++..+.. + .....|+|+.-|+.+|.++.+||.+.++
T Consensus 6 A~dp~~~~~~~a~agsgkt~~l~~~~~~~~~~-~-~~~~~i~~~t~t~~aa~em~~Ri~~~L~ 66 (1141)
T TIGR02784 6 ASDPKTSAWVSANAGSGKTHVLTQRVIRLLLN-G-VPPSKILCLTYTKAAAAEMQNRVFDRLG 66 (1141)
T ss_pred hcCCCCCEEEEEECCCCHHHHHHHHHHHHHHc-C-CCCCeEEEEecCHHHHHHHHHHHHHHHH
Confidence 34566789999999999998887776665542 2 2345899999999999999999987764
No 487
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=80.89 E-value=0.8 Score=51.94 Aligned_cols=22 Identities=45% Similarity=0.857 Sum_probs=18.8
Q ss_pred HHcCCeEEEEecCCCchhhhHH
Q 001817 310 ISENQVVVVSGETGCGKTTQLP 331 (1009)
Q Consensus 310 l~~~~~vII~apTGSGKTt~~~ 331 (1009)
+..+..+++.||+||||||..=
T Consensus 26 i~~Gef~vllGPSGcGKSTlLr 47 (338)
T COG3839 26 IEDGEFVVLLGPSGCGKSTLLR 47 (338)
T ss_pred EcCCCEEEEECCCCCCHHHHHH
Confidence 4678899999999999997653
No 488
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=80.81 E-value=0.98 Score=46.92 Aligned_cols=21 Identities=24% Similarity=0.520 Sum_probs=17.6
Q ss_pred CCeEEEEecCCCchhhhHHHH
Q 001817 313 NQVVVVSGETGCGKTTQLPQY 333 (1009)
Q Consensus 313 ~~~vII~apTGSGKTt~~~~~ 333 (1009)
+..++|+||.||||||.+-..
T Consensus 2 g~~i~l~G~sGsGKsTl~~~l 22 (186)
T PRK10078 2 GKLIWLMGPSGSGKDSLLAAL 22 (186)
T ss_pred CcEEEEECCCCCCHHHHHHHH
Confidence 568999999999999877544
No 489
>PRK08118 topology modulation protein; Reviewed
Probab=80.75 E-value=0.96 Score=46.25 Aligned_cols=20 Identities=30% Similarity=0.521 Sum_probs=16.1
Q ss_pred CeEEEEecCCCchhhhHHHH
Q 001817 314 QVVVVSGETGCGKTTQLPQY 333 (1009)
Q Consensus 314 ~~vII~apTGSGKTt~~~~~ 333 (1009)
+.++|+|+.||||||.+-..
T Consensus 2 ~rI~I~G~~GsGKSTlak~L 21 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQL 21 (167)
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 35889999999999876543
No 490
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=80.50 E-value=4.4 Score=49.00 Aligned_cols=20 Identities=30% Similarity=0.381 Sum_probs=16.1
Q ss_pred CeEEEEecCCCchhhhHHHH
Q 001817 314 QVVVVSGETGCGKTTQLPQY 333 (1009)
Q Consensus 314 ~~vII~apTGSGKTt~~~~~ 333 (1009)
+.+++.||+|||||+.+-..
T Consensus 89 ~giLL~GppGtGKT~la~al 108 (495)
T TIGR01241 89 KGVLLVGPPGTGKTLLAKAV 108 (495)
T ss_pred CcEEEECCCCCCHHHHHHHH
Confidence 56899999999999665433
No 491
>CHL00195 ycf46 Ycf46; Provisional
Probab=80.46 E-value=3.4 Score=49.64 Aligned_cols=19 Identities=21% Similarity=0.359 Sum_probs=15.8
Q ss_pred cCCeEEEEecCCCchhhhH
Q 001817 312 ENQVVVVSGETGCGKTTQL 330 (1009)
Q Consensus 312 ~~~~vII~apTGSGKTt~~ 330 (1009)
..+-+++.||+|||||+.+
T Consensus 258 ~pkGILL~GPpGTGKTllA 276 (489)
T CHL00195 258 TPRGLLLVGIQGTGKSLTA 276 (489)
T ss_pred CCceEEEECCCCCcHHHHH
Confidence 3467999999999999655
No 492
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=80.39 E-value=2.1 Score=49.46 Aligned_cols=29 Identities=31% Similarity=0.320 Sum_probs=22.1
Q ss_pred HHcCCeEEEEecCCCchhhhHHHHHHHHHH
Q 001817 310 ISENQVVVVSGETGCGKTTQLPQYILESET 339 (1009)
Q Consensus 310 l~~~~~vII~apTGSGKTt~~~~~ile~~~ 339 (1009)
|-.||..+|.||.|+||||.+-. |...+.
T Consensus 166 IGkGQR~lIvgppGvGKTTLaK~-Ian~I~ 194 (416)
T PRK09376 166 IGKGQRGLIVAPPKAGKTVLLQN-IANSIT 194 (416)
T ss_pred cccCceEEEeCCCCCChhHHHHH-HHHHHH
Confidence 45799999999999999975544 555443
No 493
>PRK07261 topology modulation protein; Provisional
Probab=80.35 E-value=1.3 Score=45.55 Aligned_cols=19 Identities=26% Similarity=0.466 Sum_probs=16.1
Q ss_pred eEEEEecCCCchhhhHHHH
Q 001817 315 VVVVSGETGCGKTTQLPQY 333 (1009)
Q Consensus 315 ~vII~apTGSGKTt~~~~~ 333 (1009)
.++|+|++||||||.+-..
T Consensus 2 ri~i~G~~GsGKSTla~~l 20 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKL 20 (171)
T ss_pred EEEEEcCCCCCHHHHHHHH
Confidence 4789999999999888653
No 494
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=80.28 E-value=4.1 Score=49.48 Aligned_cols=72 Identities=14% Similarity=0.194 Sum_probs=56.7
Q ss_pred EEEEcCCHhHHHHHHHHHHcCCCCCCCCCeEEEEecCCCCHHHHHhhcCCCCCCceEEEEecC-----ccccc-cCCCCe
Q 001817 580 VLVFMTGWDDINSLKDQLQAHPLLGDPSRVLLLACHGSMASSEQRLIFDKPEDGVRKIVLATN-----MAETS-ITINDV 653 (1009)
Q Consensus 580 iLVFl~~~~~i~~l~~~L~~~~~~~~~~~~~v~~lHs~l~~~er~~v~~~f~~G~~kVLVATn-----iae~G-IdIp~V 653 (1009)
+||++||++-+..+++.+....... .++.+..++||++...|...++. | .+|||||+ .++++ +++..+
T Consensus 102 aLil~PTRELA~Qi~~~~~~~~~~~--~~~~~~~i~GG~~~~~q~~~l~~---~-~~ivVaTPGRllD~i~~~~l~l~~v 175 (513)
T COG0513 102 ALILAPTRELAVQIAEELRKLGKNL--GGLRVAVVYGGVSIRKQIEALKR---G-VDIVVATPGRLLDLIKRGKLDLSGV 175 (513)
T ss_pred eEEECCCHHHHHHHHHHHHHHHhhc--CCccEEEEECCCCHHHHHHHHhc---C-CCEEEECccHHHHHHHcCCcchhhc
Confidence 9999999999999988887642211 15668999999999988876665 6 89999996 56666 888888
Q ss_pred eEEE
Q 001817 654 VFVI 657 (1009)
Q Consensus 654 ~~VI 657 (1009)
.++|
T Consensus 176 ~~lV 179 (513)
T COG0513 176 ETLV 179 (513)
T ss_pred CEEE
Confidence 7776
No 495
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=80.16 E-value=2.8 Score=44.85 Aligned_cols=28 Identities=43% Similarity=0.586 Sum_probs=23.7
Q ss_pred HcCCeEEEEecCCCchhhhHHHHHHHHH
Q 001817 311 SENQVVVVSGETGCGKTTQLPQYILESE 338 (1009)
Q Consensus 311 ~~~~~vII~apTGSGKTt~~~~~ile~~ 338 (1009)
..+..++|.|++|+|||+.+.+++.+.+
T Consensus 14 ~~g~~~li~G~~G~GKt~~~~~~~~~~~ 41 (224)
T TIGR03880 14 PEGHVIVVIGEYGTGKTTFSLQFLYQGL 41 (224)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3578899999999999998888887654
No 496
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=80.15 E-value=1.5 Score=45.00 Aligned_cols=45 Identities=20% Similarity=0.284 Sum_probs=29.5
Q ss_pred EEEEecCCCchhhhHHHHHHHHHHHHhcCCceEEEechhHHHHHHHHHHHHHH
Q 001817 316 VVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAA 368 (1009)
Q Consensus 316 vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~IvvtqPrR~La~qva~rva~ 368 (1009)
++|.|++|||||+.+.+++.+ .+ .+++++.-.+..-..+.+++..
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~------~~--~~~~y~at~~~~d~em~~rI~~ 46 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAE------LG--GPVTYIATAEAFDDEMAERIAR 46 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHh------cC--CCeEEEEccCcCCHHHHHHHHH
Confidence 688999999999998888754 22 2444443444445556666644
No 497
>smart00492 HELICc3 helicase superfamily c-terminal domain.
Probab=80.02 E-value=3 Score=41.43 Aligned_cols=79 Identities=16% Similarity=0.039 Sum_probs=49.1
Q ss_pred HHHHHhhcCCCCCCc-eEEEEecCccccccCCCC--eeEEEeCCCCccccccCC----------CC-CCccc--ccccCH
Q 001817 620 SSEQRLIFDKPEDGV-RKIVLATNMAETSITIND--VVFVIDCGKAKETSYDAL----------NN-TPCLL--PSWISK 683 (1009)
Q Consensus 620 ~~er~~v~~~f~~G~-~kVLVATniae~GIdIp~--V~~VId~g~~k~~~yd~~----------~~-~~~l~--~~~iS~ 683 (1009)
..+...+++.|+... ..||++|.-..+|||+|+ ++.||-.|+|-....|+. .+ ...+. ..+-..
T Consensus 33 ~~~~~~~l~~f~~~~~~~iL~~~~~~~EGiD~~g~~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 112 (141)
T smart00492 33 GKETGKLLEKYVEACENAILLATARFSEGVDFPGDYLRAVIIDGLPFPYPDSPILKARLELLRDKGQIRPFDFVSLPDAM 112 (141)
T ss_pred hhHHHHHHHHHHHcCCCEEEEEccceecceecCCCCeeEEEEEecCCCCCCCHHHHHHHHHHHHhCCCCchhHHHHHHHH
Confidence 334455666666443 379999988999999996 478888898854322221 00 11111 112233
Q ss_pred HhHHhhhcccCCCCC
Q 001817 684 AAARQRRGRAGRVQP 698 (1009)
Q Consensus 684 as~~QR~GRAGR~~~ 698 (1009)
....|-+||+=|...
T Consensus 113 ~~l~Qa~GR~iR~~~ 127 (141)
T smart00492 113 RTLAQCVGRLIRGAN 127 (141)
T ss_pred HHHHHHhCccccCcC
Confidence 557899999999865
No 498
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=80.01 E-value=2.6 Score=48.29 Aligned_cols=29 Identities=21% Similarity=0.279 Sum_probs=23.1
Q ss_pred HHcCCeEEEEecCCCchhhhHHHHHHHHH
Q 001817 310 ISENQVVVVSGETGCGKTTQLPQYILESE 338 (1009)
Q Consensus 310 l~~~~~vII~apTGSGKTt~~~~~ile~~ 338 (1009)
+..+..+.|.|++|+|||+.+.+.+....
T Consensus 120 ~~~g~i~~i~G~~g~GKT~l~~~l~~~~~ 148 (342)
T PLN03186 120 IETGSITEIYGEFRTGKTQLCHTLCVTCQ 148 (342)
T ss_pred CcCceEEEEECCCCCCccHHHHHHHHHhh
Confidence 44578899999999999988877776543
No 499
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=79.96 E-value=1.7 Score=45.92 Aligned_cols=28 Identities=29% Similarity=0.361 Sum_probs=19.8
Q ss_pred HHHHHHHHHcCCeEEEEecCCCchhhhH
Q 001817 303 RDALLKAISENQVVVVSGETGCGKTTQL 330 (1009)
Q Consensus 303 q~~il~~l~~~~~vII~apTGSGKTt~~ 330 (1009)
+.++.-+...+.++++.||.|+|||+.+
T Consensus 12 KrAL~iAAaG~h~lLl~GppGtGKTmlA 39 (206)
T PF01078_consen 12 KRALEIAAAGGHHLLLIGPPGTGKTMLA 39 (206)
T ss_dssp HHHHHHHHHCC--EEEES-CCCTHHHHH
T ss_pred HHHHHHHHcCCCCeEEECCCCCCHHHHH
Confidence 4556666678899999999999999655
No 500
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=79.85 E-value=1.3 Score=45.42 Aligned_cols=21 Identities=33% Similarity=0.523 Sum_probs=17.2
Q ss_pred CCeEEEEecCCCchhhhHHHH
Q 001817 313 NQVVVVSGETGCGKTTQLPQY 333 (1009)
Q Consensus 313 ~~~vII~apTGSGKTt~~~~~ 333 (1009)
++.++|.||+||||||.+-..
T Consensus 1 ~~~~~i~G~sGsGKttl~~~l 21 (179)
T TIGR02322 1 GRLIYVVGPSGAGKDTLLDYA 21 (179)
T ss_pred CcEEEEECCCCCCHHHHHHHH
Confidence 357899999999999877643
Done!