Query 001817
Match_columns 1009
No_of_seqs 462 out of 3422
Neff 7.5
Searched_HMMs 29240
Date Tue Mar 26 16:59:07 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/001817.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1112-1116//hhsearch_pdb/001817hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xau_A PRE-mRNA-splicing facto 1.0 1 1 879.4 56.8 640 281-1001 77-728 (773)
2 2va8_A SSO2462, SKI2-type heli 1.0 1 1 488.1 33.5 537 285-893 17-625 (715)
3 2p6r_A Afuhel308 helicase; pro 1.0 1 1 468.6 36.8 515 298-898 25-613 (702)
4 2zj8_A DNA helicase, putative 1.0 1 1 448.9 30.4 463 284-832 9-540 (720)
5 3i4u_A ATP-dependent RNA helic 1.0 1 1 383.3 23.9 247 739-1001 2-249 (270)
6 4f92_B U5 small nuclear ribonu 1.0 1 1 381.4 27.9 463 287-826 916-1463(1724)
7 4f92_B U5 small nuclear ribonu 1.0 1 1 373.6 29.1 459 297-829 79-635 (1724)
8 3l9o_A ATP-dependent RNA helic 1.0 1 1 354.7 22.6 378 293-709 179-598 (1108)
9 4a4z_A Antiviral helicase SKI2 1.0 1 1 341.8 19.5 382 295-707 36-491 (997)
10 3o8b_A HCV NS3 protease/helica 1.0 1 1 337.8 14.4 303 290-710 209-516 (666)
No 1
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=1.00 E-value=1 Score=879.44 Aligned_cols=640 Identities=35% Similarity=0.582 Sum_probs=562.6
Q ss_pred HHCCHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECHHHHHHHH
Q ss_conf 82191348799863189989999999999981993999923898524029899999999970399609996304899999
Q 001817 281 WQESPEGQKMLEFRRSLPSYKERDALLKAISENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAM 360 (1009)
Q Consensus 281 ~~~~~~~~~~~~~r~~lP~~~~q~~il~~i~~~~~vII~apTGSGKTt~~p~~ile~~~~~~~~~~~~Iiv~~P~R~la~ 360 (1009)
+..++.+.++++.|..+|++.|+++|+.++..+++++++||||||||+++|+++++.... .+.+..|+|++|+|+++.
T Consensus 77 ~~l~~~~~~~l~~r~~lP~~~q~~~i~~~l~~~~~vii~gpTGSGKTtllp~ll~~~~~~--~~~g~~ilvl~P~r~La~ 154 (773)
T 2xau_A 77 REFTPKYVDILKIRRELPVHAQRDEFLKLYQNNQIMVFVGETGSGKTTQIPQFVLFDEMP--HLENTQVACTQPRRVAAM 154 (773)
T ss_dssp SBCCHHHHHHHHHHTTSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHCG--GGGTCEEEEEESCHHHHH
T ss_pred CCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHCCC--CCCCCEEEECCCHHHHHH
T ss_conf 698989999999866189599999999999679839998899889999999999974001--589965886185699999
Q ss_pred HHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCEEEEECCHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCHHHHHHHHHH
Q ss_conf 99999999959944645423663035448993799980299999980398999931899908876777602899999987
Q 001817 361 AVSERVAAERGEKLGESVGYKVRLEGMKGRDTRLMFCTTGILLRRLLVDRSLRGVTHVIVDEIHERGMNEDFLLIVLKEL 440 (1009)
Q Consensus 361 qva~rv~~e~g~~~g~~vGy~ir~e~~~~~~t~Iiv~T~g~Ll~~L~~~~~l~~is~IIIDEvHeR~~~~d~ll~llk~l 440 (1009)
|++++++.+++..++..+||.++++.....+++|+++|+|++++.+..+..+.++++||+||+|+|+++.+.++.+++.+
T Consensus 155 q~~~~l~~~~~~~v~~~vG~~i~~~~~~~~~~~I~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l 234 (773)
T 2xau_A 155 SVAQRVAEEMDVKLGEEVGYSIRFENKTSNKTILKYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQV 234 (773)
T ss_dssp HHHHHHHHHTTCCBTTTEEEEETTEEECCTTCSEEEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHEECCEECCCCCCCCCCCEEEECHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHHHHHHHH
T ss_conf 99999999848845325662224454558898779989999999974284435778899547010364558999999999
Q ss_pred CCCCCCCCEEEECCCCCHHHHHHHHCCCCEECCCCCCCCEEEEEHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 54497771998325787788972309999213698401405675154888854205766655520134578889999999
Q 001817 441 LPRRPELRLILMSATLNAELFSSYFGGAPMLHIPGFTYPVRAYFLENILEMTRYRLNTYNQIDDYGQEKSWKMQKQALAL 520 (1009)
Q Consensus 441 l~~~~~lkiIlmSATl~~~~l~~yf~~~pvi~i~gr~~pv~~~yl~~i~~~~~~~~~~~~~i~~~~~e~~~~~~~~~~~~ 520 (1009)
...+++.++|+||||++.+.+++||++++++.++++.+|++.+|.+.. ..++
T Consensus 235 ~~~~~~~~iIl~SAT~~~~~l~~~~~~~~vi~v~gr~~pv~~~~~~~~-------------~~~~--------------- 286 (773)
T 2xau_A 235 VKRRPDLKIIIMSATLDAEKFQRYFNDAPLLAVPGRTYPVELYYTPEF-------------QRDY--------------- 286 (773)
T ss_dssp HHHCTTCEEEEEESCSCCHHHHHHTTSCCEEECCCCCCCEEEECCSSC-------------CSCH---------------
T ss_pred HHHCCCCEEEEEECCCCHHHHHHHHCCCCCCCCCCCCCCEEEEEECCC-------------CHHH---------------
T ss_conf 874878629999433568999998468985453686555388980688-------------2459---------------
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHCC
Q ss_conf 86455479999999997211001133220024689998662239999999986159996999918875899999999829
Q 001817 521 RKRKSSIASAVEDALEAADFREYSVQTQQSLSCWNPDSIGFNLIEHVLCHIVKKERPGAVLVFMTGWDDINSLKDQLQAH 600 (1009)
Q Consensus 521 ~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~li~~ll~~i~~~~~~g~iLVFl~~~~~i~~l~~~L~~~ 600 (1009)
+ ......+..++.....|++|||++++++++.++..|...
T Consensus 287 ----------~------------------------------~~~l~~l~~~~~~~~~g~iLVF~~~~~~i~~l~~~L~~~ 326 (773)
T 2xau_A 287 ----------L------------------------------DSAIRTVLQIHATEEAGDILLFLTGEDEIEDAVRKISLE 326 (773)
T ss_dssp ----------H------------------------------HHHHHHHHHHHHHSCSCEEEEECSCHHHHHHHHHHHHHH
T ss_pred ----------H------------------------------HHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHHH
T ss_conf ----------9------------------------------999999999997268999899899899999999999998
Q ss_pred C--C--CCCCCCEEEEEECCCCCHHHHHHHCCCCC-----CCCEEEEEECCCCCCCCCCCCEEEEEECCCCCCCCCCCCC
Q ss_conf 9--9--99999729998049999888986319999-----9961899964720015688975599947988641135789
Q 001817 601 P--L--LGDPSRVLLLACHGSMASSEQRLIFDKPE-----DGVRKIVLATNMAETSITINDVVFVIDCGKAKETSYDALN 671 (1009)
Q Consensus 601 ~--~--~~~~~~~~v~~lHs~l~~~er~~v~~~f~-----~G~~kVIvATniae~GIdIp~V~~VId~g~~k~~~yd~~~ 671 (1009)
. . .....++.+.++||+|+.++|..+++.|+ +|.++|||||+++|+|||||+|++|||+|+++.+.||+..
T Consensus 327 ~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~~kVlVAT~iae~GidIp~v~~VId~g~~k~~~yd~~~ 406 (773)
T 2xau_A 327 GDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRKVVISTNIAETSLTIDGIVYVVDPGFSKQKVYNPRI 406 (773)
T ss_dssp HHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSCCEEEEEECTHHHHTCCCTTEEEEEECSEEEEEEEETTT
T ss_pred HHHHCCCCCCCCEEEEEECCCCCHHHHHHHHHHCCCCCCCCCCEEEEEECCHHHHCCCCCCEEEEEECCCCCCEEECCCC
T ss_conf 87631345679759998078999999999985264345788834999967679847676873799947972212225666
Q ss_pred CCCCCCCCCCCHHHHHHHHCCCCCCCCCCEEEECCHHHH-HHHCCCCCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHCC
Q ss_conf 978666412379769955000399899907992252126-5310499963223481002468651586878999874069
Q 001817 672 NTPCLLPSWISKAAARQRRGRAGRVQPGECYHLYPRYVY-DAFADYQLPELLRTPLQSLCLQIKSLQLGSISEFLSRALQ 750 (1009)
Q Consensus 672 ~~~~l~~~~iS~a~~~QR~GRAGR~~~G~cy~L~t~~~~-~~l~~~~~PEi~r~~L~~~~L~lk~l~~~~i~~fl~~~l~ 750 (1009)
++..+.+.|+|+++|.||+|||||.++|.||+||++..+ +.+.++..|||++.+|.+++|+++.++++++..| .+++
T Consensus 407 g~~~L~~~p~S~~s~~QR~GRaGR~~~G~~~~l~~~~~~~~~l~~~~~pEi~r~~L~~~~L~l~~~gi~~~~~f--~~~~ 484 (773)
T 2xau_A 407 RVESLLVSPISKASAQQRAGRAGRTRPGKCFRLYTEEAFQKELIEQSYPEILRSNLSSTVLELKKLGIDDLVHF--DFMD 484 (773)
T ss_dssp TEEEEEEEECCHHHHHHHHHGGGSSSSEEEEESSCHHHHHHTSCSSCCCGGGGSCCHHHHHHHHHTTCCCGGGC--CCSS
T ss_pred CCCCCCCCCCCHHHHHHHCCCCCCCCCCEEEEEECHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCHHHC--CCCC
T ss_conf 83203300179999986534447899987999963788401230168975334758999999998499972324--3557
Q ss_pred CCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCCHHHH
Q ss_conf 99824499999999982643689986700100015878805899999854607940699999740479864468670899
Q 001817 751 PPEPLSVKNAIEYLQIIGALDENENLTVLGRNLSMLPVEPKLGKMLILGAIFNCLDPVMTVVAGLSVRDPFLMPFDKKDL 830 (1009)
Q Consensus 751 pp~~~~i~~al~~L~~lgald~~~~lT~lG~~ls~lPi~p~~~k~ll~~~~~~cl~~~l~Iaa~ls~~~~f~~p~~~~~~ 830 (1009)
||+.+++..|++.|..+||||+++++|++|+.|+.+|++|++||||+.|..++|++++++|+|+|+++++|+.|.++++.
T Consensus 485 ~p~~~~i~~a~~~L~~lgald~~~~lT~lG~~~a~~pl~p~~~~~l~~~~~~~c~~~~l~i~a~ls~~~~f~~~~~~~~~ 564 (773)
T 2xau_A 485 PPAPETMMRALEELNYLACLDDEGNLTPLGRLASQFPLDPMLAVMLIGSFEFQCSQEILTIVAMLSVPNVFIRPTKDKKR 564 (773)
T ss_dssp CCCHHHHHHHHHHHHHTTSBCTTSCBCHHHHHHTTSSSCHHHHHHHHHGGGGTCHHHHHHHHHHHTSCCCBCCCTTCHHH
T ss_pred CCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHH
T ss_conf 98599999999999976876557886830564243368889999998621247416899999960368855187478999
Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCC-HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 99998430359823299999999999998510542-46698703998989999998999999999869988987678999
Q 001817 831 AESAKAQFSARDYSDHLALVRAYDGWKDAERHQSG-YEYCWKNFLSAQTLKAIDSLRKQFLFLLKDAGLVDRNTENCNKW 909 (1009)
Q Consensus 831 ~~~~r~~f~~~~~sD~l~~l~~f~~~~~~~~~~~~-~~~c~~~~l~~~~l~~~~~lr~Ql~~~l~~~gl~~~~~~~~~~~ 909 (1009)
++.++..|+ +..|||++++|+|+.|.....++.. ..||++|||++++|+.+.++|.||.+++...|+...... .+ .
T Consensus 565 ~~~~~~~f~-~~~~D~~~~l~~~~~~~~~~~~~~~~~~~c~~~~l~~~~l~~~~~~~~ql~~~~~~~~~~~~~~~-~~-~ 641 (773)
T 2xau_A 565 ADDAKNIFA-HPDGDHITLLNVYHAFKSDEAYEYGIHKWCRDHYLNYRSLSAADNIRSQLERLMNRYNLELNTTD-YE-S 641 (773)
T ss_dssp HHHHHHTTC-CTTBHHHHHHHHHHHHTSHHHHHHCHHHHHHHTTBCHHHHHHHHHHHHHHHHHHHHTTCCCCCCC-TT-S
T ss_pred HHHHHHHCC-CCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCC-CC-C
T ss_conf 999998506-88985999999999998702221068999998388999999999999999999874288757777-77-3
Q ss_pred CCCHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECCC-EEEEECCCCCCCCCCCCCCEEEEEEEHHCCCCEEEECCCCCH
Q ss_conf 9787999999983068994212356543016740398-799904787899999999938995000214424431144497
Q 001817 910 SHDEHLIRAVICAGLFPGLCSVVNKEKSIALKTMEDG-QVLLYSNSVNAGVPKIPYPWLVFNEKIKVNSVFLRDSTGVSD 988 (1009)
Q Consensus 910 s~~~~lira~l~ag~ypnva~~~~~~~~~~~~t~~~~-~v~iHPsSv~~~~~~~~~~~ivy~E~~~tsk~yir~~T~I~p 988 (1009)
..++..|+++||+|||+|+|+..... ..|.++.++ .|.|||+|++.. .++||||+|++.|++.|||++|+|+|
T Consensus 642 ~~~~~~i~~~l~~g~~~~~a~~~~~~--~~y~~~~~~~~~~ihp~s~l~~----~~~~~v~~e~~~t~~~~~~~~~~i~~ 715 (773)
T 2xau_A 642 PKYFDNIRKALASGFFMQVAKKRSGA--KGYITVKDNQDVLIHPSTVLGH----DAEWVIYNEFVLTSKNYIRTVTSVRP 715 (773)
T ss_dssp TTHHHHHHHHHHHHHTTSEEEECCC----CEEETTTCCEEEECTTCCCCT----TCSEEEEEEEEESSSEEEEEEEECCH
T ss_pred HHHHHHHHHHHHHHCHHHHEEECCCC--CCCEEEECCCEEEECCCCCCCC----CCCEEEEEEEECCCHHHEEECCCCCH
T ss_conf 20699999999986737551434678--7415733797799889864679----98989999862024424244160799
Q ss_pred HHHHHHCCCCCCC
Q ss_conf 8999730834447
Q 001817 989 SVLLLFGGNISRG 1001 (1009)
Q Consensus 989 ~~L~lfgg~l~~~ 1001 (1009)
.||..++++++..
T Consensus 716 ~~l~~~~~~~~~~ 728 (773)
T 2xau_A 716 EWLIEIAPAYYDL 728 (773)
T ss_dssp HHHHHHCTTTSCG
T ss_pred HHHHHHHHHHEEE
T ss_conf 9999987876220
No 2
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=1.00 E-value=1 Score=488.08 Aligned_cols=537 Identities=16% Similarity=0.128 Sum_probs=370.2
Q ss_pred HHHHHHHHHHCCCCCHHHHHHHHHH-HHCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHHH
Q ss_conf 1348799863189989999999999-981993999923898524029899999999970399609996304899999999
Q 001817 285 PEGQKMLEFRRSLPSYKERDALLKA-ISENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVS 363 (1009)
Q Consensus 285 ~~~~~~~~~r~~lP~~~~q~~il~~-i~~~~~vII~apTGSGKTt~~p~~ile~~~~~~~~~~~~Iiv~~P~R~la~qva 363 (1009)
+...+.++....-..+..|.+++.. +.++++++++||||||||+++++++++.+.. .+++++|++|+|++|.|++
T Consensus 17 ~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~----~~~~il~i~P~r~La~q~~ 92 (715)
T 2va8_A 17 SNVIEIIKKRGIKKLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLIAEMGIISFLLK----NGGKAIYVTPLRALTNEKY 92 (715)
T ss_dssp HHHHHHHHTTSCCBCCHHHHHHHHTTTTTTCCEEEECCTTSCHHHHHHHHHHHHHHH----SCSEEEEECSCHHHHHHHH
T ss_pred HHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHHH----CCCEEEEEECCHHHHHHHH
T ss_conf 999999986799879999999999986489948998489875999999999999997----7984999908599999999
Q ss_pred HHHHH--HHCCCCCCEEEEEEEECCCCCCCCEEEEECCHHHHHHHHCCC-CCCCCCEEEEECCCCCCCCCHHHHHHHHHH
Q ss_conf 99999--959944645423663035448993799980299999980398-999931899908876777602899999987
Q 001817 364 ERVAA--ERGEKLGESVGYKVRLEGMKGRDTRLMFCTTGILLRRLLVDR-SLRGVTHVIVDEIHERGMNEDFLLIVLKEL 440 (1009)
Q Consensus 364 ~rv~~--e~g~~~g~~vGy~ir~e~~~~~~t~Iiv~T~g~Ll~~L~~~~-~l~~is~IIIDEvHeR~~~~d~ll~llk~l 440 (1009)
+++.. .+|..++..+|+..+.+... .+++|+|+|||++.+.+..++ ++.++++||+||+|+.+ .+.....++.+
T Consensus 93 ~~~~~~~~~g~~v~~~~G~~~~~~~~~-~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~l~--~~~~~~~l~~i 169 (715)
T 2va8_A 93 LTFKDWELIGFKVAMTSGDYDTDDAWL-KNYDIIITTYEKLDSLWRHRPEWLNEVNYFVLDELHYLN--DPERGPVVESV 169 (715)
T ss_dssp HHHGGGGGGTCCEEECCSCSSSCCGGG-GGCSEEEECHHHHHHHHHHCCGGGGGEEEEEECSGGGGG--CTTTHHHHHHH
T ss_pred HHHHHHHCCCCEEEEEECCCCCCHHHC-CCCCEEEECHHHHHHHHHCCHHHHHCCCEEEEECHHHCC--CCCCCHHHHHH
T ss_conf 999876527988999848977762013-799999985899999996785576436989995355527--86622299999
Q ss_pred CCCCCCCCEEEECCCC-CHHHHHHHHCCCCEECCCCCCCCEEEEEHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 5449777199832578-778897230999921369840140567515488885420576665552013457888999999
Q 001817 441 LPRRPELRLILMSATL-NAELFSSYFGGAPMLHIPGFTYPVRAYFLENILEMTRYRLNTYNQIDDYGQEKSWKMQKQALA 519 (1009)
Q Consensus 441 l~~~~~lkiIlmSATl-~~~~l~~yf~~~pvi~i~gr~~pv~~~yl~~i~~~~~~~~~~~~~i~~~~~e~~~~~~~~~~~ 519 (1009)
+.+.+++|+|+||||+ |.+.+++||+ ++.+..+++.+|+...+.........+. + .+..
T Consensus 170 ~~~~~~~~ii~lSATl~n~~~~~~~l~-~~~~~~~~r~~~l~~~~~~~~~~~~~~~------~-~~~~------------ 229 (715)
T 2va8_A 170 TIRAKRRNLLALSATISNYKQIAKWLG-AEPVATNWRPVPLIEGVIYPERKKKEYN------V-IFKD------------ 229 (715)
T ss_dssp HHHHHTSEEEEEESCCTTHHHHHHHHT-CEEEECCCCSSCEEEEEEEECSSTTEEE------E-EETT------------
T ss_pred HHHCCCCCEEEECCCCCCHHHHHHHHC-CCCCCCCCCCCCCEEEEEECCCCCCCEE------E-ECCC------------
T ss_conf 986536728997178799999999849-9745799998874688883587665404------6-5276------------
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHC
Q ss_conf 98645547999999999721100113322002468999866223999999998615999699991887589999999982
Q 001817 520 LRKRKSSIASAVEDALEAADFREYSVQTQQSLSCWNPDSIGFNLIEHVLCHIVKKERPGAVLVFMTGWDDINSLKDQLQA 599 (1009)
Q Consensus 520 ~~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~li~~ll~~i~~~~~~g~iLVFl~~~~~i~~l~~~L~~ 599 (1009)
.....+. ..+.+...+.+.+. ..+++|||++++++++.++..|..
T Consensus 230 --------------------------~~~~~~~-------~~~~~~~~~~~~~~--~~~~~LVF~~s~~~~~~~a~~L~~ 274 (715)
T 2va8_A 230 --------------------------NTTKKVH-------GDDAIIAYTLDSLS--KNGQVLVFRNSRKMAESTALKIAN 274 (715)
T ss_dssp --------------------------SCEEEEE-------SSSHHHHHHHHHHT--TTCCEEEECSSHHHHHHHHHHHHH
T ss_pred --------------------------CHHHHCC-------CCHHHHHHHHHHHH--CCCCEEEEECCHHHHHHHHHHHHH
T ss_conf --------------------------0443213-------44389999999986--699779997988999999999999
Q ss_pred CCCC---CC--------------------------CCCEEEEEECCCCCHHHHHHHCCCCCCCCEEEEEECCCCCCCCCC
Q ss_conf 9999---99--------------------------997299980499998889863199999961899964720015688
Q 001817 600 HPLL---GD--------------------------PSRVLLLACHGSMASSEQRLIFDKPEDGVRKIVLATNMAETSITI 650 (1009)
Q Consensus 600 ~~~~---~~--------------------------~~~~~v~~lHs~l~~~er~~v~~~f~~G~~kVIvATniae~GIdI 650 (1009)
.... .. .....+.+|||+|+.++|..+++.|++|.++|||||+++++|||+
T Consensus 275 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~r~~v~~~f~~g~~~vlvaT~~l~~Gidi 354 (715)
T 2va8_A 275 YMNFVSLDENALSEILKQLDDIEEGGSDEKELLKSLISKGVAYHHAGLSKALRDLIEEGFRQRKIKVIVATPTLAAGVNL 354 (715)
T ss_dssp TTTSSCCCHHHHHHHHHHHHTCCSSCHHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTCSCEEEECGGGGGSSCC
T ss_pred HHHHCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCEEEECCCCCHHHHHHHHHHHHCCCCEEEEECHHHHCCCCC
T ss_conf 87654288677899999999866345532299999996687887899999999999999986998599978087661688
Q ss_pred CCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCC---CCCEEEECCHHH-HHHHCC---CCCCCCCC
Q ss_conf 97559994798864113578997866641237976995500039989---990799225212-653104---99963223
Q 001817 651 NDVVFVIDCGKAKETSYDALNNTPCLLPSWISKAAARQRRGRAGRVQ---PGECYHLYPRYV-YDAFAD---YQLPELLR 723 (1009)
Q Consensus 651 p~V~~VId~g~~k~~~yd~~~~~~~l~~~~iS~a~~~QR~GRAGR~~---~G~cy~L~t~~~-~~~l~~---~~~PEi~r 723 (1009)
|++++||++ ...||+..+.. ..|+|.+++.||+|||||.+ +|.||+++++.. +..+.+ ...||+.+
T Consensus 355 p~~~~VI~~----~~~~d~~~~~~---~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~~~~~~~~~~l~~~~e~~~ 427 (715)
T 2va8_A 355 PARTVIIGD----IYRFNKKIAGY---YDEIPIMEYKQMSGRAGRPGFDQIGESIVVVRDKEDVDRVFKKYVLSDVEPIE 427 (715)
T ss_dssp CBSEEEECC----C-----------------CHHHHHHHHTTBCCTTTCSCEEEEEECSCGGGHHHHHHHTTSSCCCCCC
T ss_pred CCEEEEEEC----CEECCCCCCCC---CCCCCHHHHHHHHHHCCCCCCCCCCEEEEEECCCHHHHHHHHHHHCCCCCCCE
T ss_conf 854999918----75644667778---77599999999842427998888756999967806799999999708998735
Q ss_pred CCCHH------HHHHHHHCCC----CCHHHHHHHHCC--CCCHHHHHHHHHHHHHHCCCCCCC---CCCHHHHHCCCCCC
Q ss_conf 48100------2468651586----878999874069--998244999999999826436899---86700100015878
Q 001817 724 TPLQS------LCLQIKSLQL----GSISEFLSRALQ--PPEPLSVKNAIEYLQIIGALDENE---NLTVLGRNLSMLPV 788 (1009)
Q Consensus 724 ~~L~~------~~L~lk~l~~----~~i~~fl~~~l~--pp~~~~i~~al~~L~~lgald~~~---~lT~lG~~ls~lPi 788 (1009)
.++.. .++.+...+. .++.+|+...+- +|+...+..+++.|...|+|+.++ .+|++|++++.+|+
T Consensus 428 s~l~~~~~l~~~~l~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~al~~L~~~g~i~~~~~~~~~t~lG~~~~~~~~ 507 (715)
T 2va8_A 428 SKLGSERAFYTFLLGILSAEGNLSEKQLENFAYESLLAKQLVDVYFDRAIRWLLEHSFIKEEGNTFALTNFGKRVADLYI 507 (715)
T ss_dssp CSCCSHHHHHHHHHHHHHHHCSEEHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHTTSEEECSSEEEECHHHHHHHHHTC
T ss_pred ECCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCEEECCCEEEECHHHHHHHHHCC
T ss_conf 33786667999999998515668899999999850787642638899999999888497666986866768999999748
Q ss_pred CHHHHHHHHHHHHH---CCCCHHHHHHHHHC-CCCCCCCCCCHHHHHHHHHH---H-HCCCC-----HH---HHHHHHHH
Q ss_conf 80589999985460---79406999997404-79864468670899999984---3-03598-----23---29999999
Q 001817 789 EPKLGKMLILGAIF---NCLDPVMTVVAGLS-VRDPFLMPFDKKDLAESAKA---Q-FSARD-----YS---DHLALVRA 852 (1009)
Q Consensus 789 ~p~~~k~ll~~~~~---~cl~~~l~Iaa~ls-~~~~f~~p~~~~~~~~~~r~---~-f~~~~-----~s---D~l~~l~~ 852 (1009)
+|.+++|++.+... .|...++.|+|+.+ +.++++.|.+.....+.... . +.... +. .++...-+
T Consensus 508 ~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~e~~~~~~r~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l 587 (715)
T 2va8_A 508 NPFTADIIRKGLEGHKASCELAYLHLLAFTPDGPLVSVGRNEEEELIELLEDLDCELLIEEPYEEDEYSLYINALKVALI 587 (715)
T ss_dssp CHHHHHHHHHHHHHSCCCCHHHHHHHHHHSTTSCCCCCCHHHHHHHHHHHTTCSSCCSSCCCSSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCHHHCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 98679999998654257878999999526843345764867899999999852111113666543102345777999999
Q ss_pred HHHHHHHHHCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 99999985105424669870399898999999899999999
Q 001817 853 YDGWKDAERHQSGYEYCWKNFLSAQTLKAIDSLRKQFLFLL 893 (1009)
Q Consensus 853 f~~~~~~~~~~~~~~~c~~~~l~~~~l~~~~~lr~Ql~~~l 893 (1009)
.+.|.+. .....+|.+..+....++.+.+....|...+
T Consensus 588 l~~~~~~---~~~~~i~~~y~~~~gdl~~l~~~a~~l~~a~ 625 (715)
T 2va8_A 588 MKDWMDE---VDEDTILSKYNIGSGDLRNMVETMDWLTYSA 625 (715)
T ss_dssp HHHHHTT---CCHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCC---CCHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
T ss_conf 9999849---9878999997898244999999999999999
No 3
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=1.00 E-value=1 Score=468.59 Aligned_cols=515 Identities=17% Similarity=0.193 Sum_probs=368.1
Q ss_pred CCHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHHHHHHHH--HHCCCCC
Q ss_conf 98999999999998199399992389852402989999999997039960999630489999999999999--9599446
Q 001817 298 PSYKERDALLKAISENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAA--ERGEKLG 375 (1009)
Q Consensus 298 P~~~~q~~il~~i~~~~~vII~apTGSGKTt~~p~~ile~~~~~~~~~~~~Iiv~~P~R~la~qva~rv~~--e~g~~~g 375 (1009)
..+..|.+++..+.++++++++||||||||+++++++++.... +++++|++|+|++|.|+++++.. .+|..++
T Consensus 25 ~l~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~~l~il~~~~~-----~~~~l~i~P~r~La~q~~~~~~~~~~~g~~v~ 99 (702)
T 2p6r_A 25 ELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREAIK-----GGKSLYVVPLRALAGEKYESFKKWEKIGLRIG 99 (702)
T ss_dssp CCCCCCHHHHHHHTTCSCEEEECSSHHHHHHHHHHHHHHHHHT-----TCCEEEEESSHHHHHHHHHHHTTTTTTTCCEE
T ss_pred CCCHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHHH-----CCCEEEEECCHHHHHHHHHHHHHHHHCCCEEE
T ss_conf 8999999999998389968998689617999999999999986-----89599993709999999999997770498899
Q ss_pred CEEEEEEEECCCCCCCCEEEEECCHHHHHHHHCCC-CCCCCCEEEEECCCC-----CCCCCHHHHHHHHHHCCCCCCCCE
Q ss_conf 45423663035448993799980299999980398-999931899908876-----777602899999987544977719
Q 001817 376 ESVGYKVRLEGMKGRDTRLMFCTTGILLRRLLVDR-SLRGVTHVIVDEIHE-----RGMNEDFLLIVLKELLPRRPELRL 449 (1009)
Q Consensus 376 ~~vGy~ir~e~~~~~~t~Iiv~T~g~Ll~~L~~~~-~l~~is~IIIDEvHe-----R~~~~d~ll~llk~ll~~~~~lki 449 (1009)
..+|+..+.+... .+++|+|+|||++.+.+..++ ++.++++||+||+|+ |+...+.++..++. .++++|+
T Consensus 100 ~~~G~~~~~~~~~-~~~~Iiv~Tpe~l~~~l~~~~~~l~~~~~vIiDE~H~l~~~~r~~~~~~ll~~l~~---~~~~~~i 175 (702)
T 2p6r_A 100 ISTGDYESRDEHL-GDCDIIVTTSEKADSLIRNRASWIKAVSCLVVDEIHLLDSEKRGATLEILVTKMRR---MNKALRV 175 (702)
T ss_dssp EECSSCBCCSSCS-TTCSEEEEEHHHHHHHHHTTCSGGGGCCEEEETTGGGGGCTTTHHHHHHHHHHHHH---HCTTCEE
T ss_pred EEECCCCCCHHHC-CCCCEEEECHHHHHHHHHCCHHHHHHCCEEEEEEEEECCCCCCCCHHHHHHHHHHH---CCCCCEE
T ss_conf 9838877664352-69999998989999999757557762598988502554787765279999999984---3867659
Q ss_pred EEECCCC-CHHHHHHHHCCCCEECCCCCCCCEEEEEHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9832578-778897230999921369840140567515488885420576665552013457888999999986455479
Q 001817 450 ILMSATL-NAELFSSYFGGAPMLHIPGFTYPVRAYFLENILEMTRYRLNTYNQIDDYGQEKSWKMQKQALALRKRKSSIA 528 (1009)
Q Consensus 450 IlmSATl-~~~~l~~yf~~~pvi~i~gr~~pv~~~yl~~i~~~~~~~~~~~~~i~~~~~e~~~~~~~~~~~~~~~~~~~~ 528 (1009)
|+||||+ |.+.+++||+ ++.+..+++.+|+...+.... .+ .+....
T Consensus 176 i~lSATl~n~~~~~~~l~-~~~~~~~~r~~~l~~~~~~~~------------~~-~~~~~~------------------- 222 (702)
T 2p6r_A 176 IGLSATAPNVTEIAEWLD-ADYYVSDWRPVPLVEGVLCEG------------TL-ELFDGA------------------- 222 (702)
T ss_dssp EEEECCCTTHHHHHHHTT-CEEEECCCCSSCEEEEEECSS------------EE-EEEETT-------------------
T ss_pred EEECCCCCCHHHHHHHHC-CCCCCCCCCCCCCEEEEEECC------------EE-ECCCCC-------------------
T ss_conf 997887689999999848-972368887766468886178------------23-105763-------------------
Q ss_pred HHHHHHHHHHHHCCHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHCCC--CCCCC
Q ss_conf 9999999972110011332200246899986622399999999861599969999188758999999998299--99999
Q 001817 529 SAVEDALEAADFREYSVQTQQSLSCWNPDSIGFNLIEHVLCHIVKKERPGAVLVFMTGWDDINSLKDQLQAHP--LLGDP 606 (1009)
Q Consensus 529 ~~v~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~li~~ll~~i~~~~~~g~iLVFl~~~~~i~~l~~~L~~~~--~~~~~ 606 (1009)
.... .... +...+..... ..+++|||++++++++.++..|.... .....
T Consensus 223 -------------------~~~~-------~~~~-~~~~~~~~~~--~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~ 273 (702)
T 2p6r_A 223 -------------------FSTS-------RRVK-FEELVEECVA--ENGGVLVFESTRRGAEKTAVKLSAITAKYVENE 273 (702)
T ss_dssp -------------------EEEE-------EECC-HHHHHHHHHH--TTCCEEEECSSHHHHHHHHHHHHHHHHTTCCCS
T ss_pred -------------------HHHH-------HHHH-HHHHHHHHHH--CCCCEEEECCCHHHHHHHHHHHHHHHHHHCCHH
T ss_conf -------------------0144-------4546-9999999996--699789983887899999999999987646958
Q ss_pred ---------------------CCEEEEEECCCCCHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCCEEEEEECCCCCCC
Q ss_conf ---------------------97299980499998889863199999961899964720015688975599947988641
Q 001817 607 ---------------------SRVLLLACHGSMASSEQRLIFDKPEDGVRKIVLATNMAETSITINDVVFVIDCGKAKET 665 (1009)
Q Consensus 607 ---------------------~~~~v~~lHs~l~~~er~~v~~~f~~G~~kVIvATniae~GIdIp~V~~VId~g~~k~~ 665 (1009)
.+..+.++||+|+.++|..+++.|++|.++|||||+++++|||+|++.+||++ ..
T Consensus 274 ~~~~~i~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~----~~ 349 (702)
T 2p6r_A 274 GLEKAILEENEGEMSRKLAECVRKGAAFHHAGLLNGQRRVVEDAFRRGNIKVVVATPTLAAGVNLPARRVIVRS----LY 349 (702)
T ss_dssp SHHHHHHTTCCSHHHHHHHHHHHTTCCEECTTSCHHHHHHHHHHHHTTSCCEEEECSTTTSSSCCCBSEEEECC----SE
T ss_pred HHHHHHHHHCCCCCCHHHHHHHHCCEEEECCCCCHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCEEEEECC----CE
T ss_conf 89999986245532199999984692886699999999999999987998499978388665788733999847----62
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCC---CCCEEEECCHHHHHHHCC---CCCCCCCCCCCHH------HHHHH
Q ss_conf 13578997866641237976995500039989---990799225212653104---9996322348100------24686
Q 001817 666 SYDALNNTPCLLPSWISKAAARQRRGRAGRVQ---PGECYHLYPRYVYDAFAD---YQLPELLRTPLQS------LCLQI 733 (1009)
Q Consensus 666 ~yd~~~~~~~l~~~~iS~a~~~QR~GRAGR~~---~G~cy~L~t~~~~~~l~~---~~~PEi~r~~L~~------~~L~l 733 (1009)
.||. . ..|+|.+++.||+|||||.+ +|.||+++++..++.+.+ ...||+.+.++.. .++.+
T Consensus 350 ~yd~---~----~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~~~~~~~~~l~~~~e~~~s~l~~~~~l~~~~l~~ 422 (702)
T 2p6r_A 350 RFDG---Y----SKRIKVSEYKQMAGRAGRPGMDERGEAIIIVGKRDREIAVKRYIFGEPERITSKLGVETHLRFHSLSI 422 (702)
T ss_dssp EESS---S----EEECCHHHHHHHHTTBSCTTTCSCEEEEEECCGGGHHHHHHTTTSSCCCCCCCCCCSHHHHHHHHHHH
T ss_pred EECC---C----CCCCCHHHHHHHHHHCCCCCCCCCCEEEEEECCCCHHHHHHHHHCCCCCCCEEECCCCHHHHHHHHHH
T ss_conf 3078---7----77589999999843327999998736999955731899999996089988465168605589999999
Q ss_pred HHCCC----CCHHHHHHHHC-----CCCCHHHHHHHHHHHHHHCCCCCC--CCCCHHHHHCCCCCCCHHHHHHHHHHHHH
Q ss_conf 51586----87899987406-----999824499999999982643689--98670010001587880589999985460
Q 001817 734 KSLQL----GSISEFLSRAL-----QPPEPLSVKNAIEYLQIIGALDEN--ENLTVLGRNLSMLPVEPKLGKMLILGAIF 802 (1009)
Q Consensus 734 k~l~~----~~i~~fl~~~l-----~pp~~~~i~~al~~L~~lgald~~--~~lT~lG~~ls~lPi~p~~~k~ll~~~~~ 802 (1009)
...+. .++.+|+...+ .+|..+.+..+++.|...|+|+.+ +.+|++|++++.+|++|.++++++.+...
T Consensus 423 ~~~g~~~~~~~~~~~l~~t~~~~~~~~~~~~~~~~al~~L~~~g~i~~~~~~~~t~lG~~~~~~~~~~~~~~~~~~~~~~ 502 (702)
T 2p6r_A 423 ICDGYAKTLEELEDFFADTFFFKQNEISLSYELERVVRQLENWGMVVEAAHLAPTKLGSLVSRLYIDPLTGFIFHDVLSR 502 (702)
T ss_dssp HHHTSCSSHHHHHHHHHTSTTHHHHCCCCHHHHHHHHHHHHHTTSEEESSSEEECHHHHHHHHTTCCHHHHHHHHHHTTT
T ss_pred HHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCEECCCHHHHHHHHHHCCHHHHHHHHHHHHC
T ss_conf 97177888999999998506777501789999999999999885942899066486999999985789899999997430
Q ss_pred --CCCCHHHHHHHHHC-CCCCCCCCCCHHHHHHHH-H--HHH------CCCCHH---HHHHHHHHHHHHHHHHHCCCCHH
Q ss_conf --79406999997404-798644686708999999-8--430------359823---29999999999999851054246
Q 001817 803 --NCLDPVMTVVAGLS-VRDPFLMPFDKKDLAESA-K--AQF------SARDYS---DHLALVRAYDGWKDAERHQSGYE 867 (1009)
Q Consensus 803 --~cl~~~l~Iaa~ls-~~~~f~~p~~~~~~~~~~-r--~~f------~~~~~s---D~l~~l~~f~~~~~~~~~~~~~~ 867 (1009)
.|...++.|+|+.+ +.+.++.+.+ ....+.. + ..+ ...... .++...-+.+.|.+.. ....
T Consensus 503 ~~~~~~~~l~~i~~~~e~~~i~~r~~e-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~lL~~~~~~~---~l~~ 578 (702)
T 2p6r_A 503 MELSDIGALHLICRTPDMERLTVRKTD-SWVEEEAFRLRKELSYYPSDFSVEYDWFLSEVKTALCLKDWIEEK---DEDE 578 (702)
T ss_dssp CCCCHHHHHHHHHHSTTSCCCCCCTTT-HHHHHHHHHHGGGSSCCCCTTSTTHHHHHHHHHHHHHHHHHHTTC---CHHH
T ss_pred CCCCHHHHHHHHHCCCCCCCCCCCCCH-HHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCC---CHHH
T ss_conf 468789999995377444457778765-999999986546666786300001234566699999999998279---8688
Q ss_pred HHHHHCCCHHHHHHHHH----HHHHHHHHHHHCCC
Q ss_conf 69870399898999999----89999999998699
Q 001817 868 YCWKNFLSAQTLKAIDS----LRKQFLFLLKDAGL 898 (1009)
Q Consensus 868 ~c~~~~l~~~~l~~~~~----lr~Ql~~~l~~~gl 898 (1009)
.|.+..+...-++.+.+ +-..+.++....|.
T Consensus 579 i~~~~~~~~gdl~~i~~~a~~l~~a~~~i~~~~g~ 613 (702)
T 2p6r_A 579 ICAKYGIAPGDLRRIVETAEWLSNAMNRIAEEVGN 613 (702)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCH
T ss_conf 99885776775999999999999999999997399
No 4
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=1.00 E-value=1 Score=448.94 Aligned_cols=463 Identities=17% Similarity=0.138 Sum_probs=327.2
Q ss_pred CHHHHHHHHHHCCCCCHHHHHHHHHH-HHCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHH
Q ss_conf 91348799863189989999999999-98199399992389852402989999999997039960999630489999999
Q 001817 284 SPEGQKMLEFRRSLPSYKERDALLKA-ISENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAV 362 (1009)
Q Consensus 284 ~~~~~~~~~~r~~lP~~~~q~~il~~-i~~~~~vII~apTGSGKTt~~p~~ile~~~~~~~~~~~~Iiv~~P~R~la~qv 362 (1009)
++.+.+.++.+.....+.+|.+++.. +.++++++++||||||||+++++++++..... +.+++|++|+|+||.|+
T Consensus 9 ~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~----~~~~l~i~P~raLa~q~ 84 (720)
T 2zj8_A 9 DERIKSTLKERGIESFYPPQAEALKSGILEGKNALISIPTASGKTLIAEIAMVHRILTQ----GGKAVYIVPLKALAEEK 84 (720)
T ss_dssp CHHHHHHHHHTTCCBCCHHHHHHHTTTGGGTCEEEEECCGGGCHHHHHHHHHHHHHHHH----CSEEEEECSSGGGHHHH
T ss_pred CHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHC----CCEEEEECCCHHHHHHH
T ss_conf 98999999877998899999999999855799489986996379999999999999867----99899985969999999
Q ss_pred HHHHHH--HHCCCCCCEEEEEEEECCCCCCCCEEEEECCHHHHHHHHCCC-CCCCCCEEEEECCC-----CCCCCCHHHH
Q ss_conf 999999--959944645423663035448993799980299999980398-99993189990887-----6777602899
Q 001817 363 SERVAA--ERGEKLGESVGYKVRLEGMKGRDTRLMFCTTGILLRRLLVDR-SLRGVTHVIVDEIH-----ERGMNEDFLL 434 (1009)
Q Consensus 363 a~rv~~--e~g~~~g~~vGy~ir~e~~~~~~t~Iiv~T~g~Ll~~L~~~~-~l~~is~IIIDEvH-----eR~~~~d~ll 434 (1009)
++++.. .+|..++..+|. ...+.....+++|+|+||+++.+.+..++ ++.++++||+||+| +|+...+.++
T Consensus 85 ~~~~~~l~~~g~~v~~~~G~-~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~l~~~~r~~~~~~ll 163 (720)
T 2zj8_A 85 FQEFQDWEKIGLRVAMATGD-YDSKDEWLGKYDIIIATAEKFDSLLRHGSSWIKDVKILVADEIHLIGSRDRGATLEVIL 163 (720)
T ss_dssp HHHTGGGGGGTCCEEEECSC-SSCCCGGGGGCSEEEECHHHHHHHHHHTCTTGGGEEEEEEETGGGGGCTTTHHHHHHHH
T ss_pred HHHHHHHHHCCCEEEEECCC-CCCCCCCCCCCCEEEECHHHHHHHHHCCHHHHHCCCEEEEECCCCCCCCCCCHHHHHHH
T ss_conf 99999887359779996389-77641214799999988899999997571466527989998985567876447999999
Q ss_pred HHHHHHCCCCCCCCEEEECCCC-CHHHHHHHHCCCCEECCCCCCCCEEEEEHHHHHHHHHHCCCCCCCCCCCHHHHHHHH
Q ss_conf 9999875449777199832578-778897230999921369840140567515488885420576665552013457888
Q 001817 435 IVLKELLPRRPELRLILMSATL-NAELFSSYFGGAPMLHIPGFTYPVRAYFLENILEMTRYRLNTYNQIDDYGQEKSWKM 513 (1009)
Q Consensus 435 ~llk~ll~~~~~lkiIlmSATl-~~~~l~~yf~~~pvi~i~gr~~pv~~~yl~~i~~~~~~~~~~~~~i~~~~~e~~~~~ 513 (1009)
..++ .++|+|+||||+ |.+.+++||+ ++.+..+++..|+...+.... .+ .+...
T Consensus 164 ~~l~------~~~~ii~lSATl~n~~~~~~~l~-~~~~~~~~rp~~l~~~~~~~~------------~~-~~~~~----- 218 (720)
T 2zj8_A 164 AHML------GKAQIIGLSATIGNPEELAEWLN-AELIVSDWRPVKLRRGVFYQG------------FV-TWEDG----- 218 (720)
T ss_dssp HHHB------TTBEEEEEECCCSCHHHHHHHTT-EEEEECCCCSSEEEEEEEETT------------EE-EETTS-----
T ss_pred HHHH------CCCEEEEECCCCCCHHHHHHHHC-CCCCCCCCCCCCCEEEEEECC------------EE-ECCCC-----
T ss_conf 9864------07769997588689999999829-860378988876368897578------------13-11653-----
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHH
Q ss_conf 99999998645547999999999721100113322002468999866223999999998615999699991887589999
Q 001817 514 QKQALALRKRKSSIASAVEDALEAADFREYSVQTQQSLSCWNPDSIGFNLIEHVLCHIVKKERPGAVLVFMTGWDDINSL 593 (1009)
Q Consensus 514 ~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~li~~ll~~i~~~~~~g~iLVFl~~~~~i~~l 593 (1009)
... ..+.+...+.+.+. ..+++|||++++++++.+
T Consensus 219 ---------------------------------~~~----------~~~~~~~~~~~~~~--~~~~~LVF~~sr~~~~~~ 253 (720)
T 2zj8_A 219 ---------------------------------SID----------RFSSWEELVYDAIR--KKKGALIFVNMRRKAERV 253 (720)
T ss_dssp ---------------------------------CEE----------ECSSTTHHHHHHHH--TTCCEEEECSCHHHHHHH
T ss_pred ---------------------------------CHH----------HHHHHHHHHHHHHH--CCCCEEEEECCHHHHHHH
T ss_conf ---------------------------------200----------01699999999986--799889996587999999
Q ss_pred HHHHHCCCC--CC------------------------CCCCEEEEEECCCCCHHHHHHHCCCCCCCCEEEEEECCCCCCC
Q ss_conf 999982999--99------------------------9997299980499998889863199999961899964720015
Q 001817 594 KDQLQAHPL--LG------------------------DPSRVLLLACHGSMASSEQRLIFDKPEDGVRKIVLATNMAETS 647 (1009)
Q Consensus 594 ~~~L~~~~~--~~------------------------~~~~~~v~~lHs~l~~~er~~v~~~f~~G~~kVIvATniae~G 647 (1009)
+..|..... .. ......+.++||+++.++|..+++.|++|.++|||||+++++|
T Consensus 254 a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~G 333 (720)
T 2zj8_A 254 ALELSKKVKSLLTKPEIRALNELADSLEENPTNEKLAKAIRGGVAFHHAGLGRDERVLVEENFRKGIIKAVVATPTLSAG 333 (720)
T ss_dssp HHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTSSCEEEECSTTGGG
T ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCEEEECCCCCHHHHHHHHHHHHCCCCEEEEECCHHHCC
T ss_conf 99999999874590668999999998751665088999985194632489999999999999977997599988186662
Q ss_pred CCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCC---CCCEEEECCHHHHH----HHCCCCCCC
Q ss_conf 68897559994798864113578997866641237976995500039989---99079922521265----310499963
Q 001817 648 ITINDVVFVIDCGKAKETSYDALNNTPCLLPSWISKAAARQRRGRAGRVQ---PGECYHLYPRYVYD----AFADYQLPE 720 (1009)
Q Consensus 648 IdIp~V~~VId~g~~k~~~yd~~~~~~~l~~~~iS~a~~~QR~GRAGR~~---~G~cy~L~t~~~~~----~l~~~~~PE 720 (1009)
||+|++++||+.+ ..||. .+ ..|+|.+++.||+|||||.+ +|.||.++++...+ .+.....++
T Consensus 334 vdip~~~~VI~~~----~~yd~-~g-----~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~~~~~~~~~~~~~~~~ 403 (720)
T 2zj8_A 334 INTPAFRVIIRDI----WRYSD-FG-----MERIPIIEVHQMLGRAGRPKYDEVGEGIIVSTSDDPREVMNHYIFGKPEK 403 (720)
T ss_dssp CCCCBSEEEECCS----EECCS-SS-----CEECCHHHHHHHHTTBCCTTTCSEEEEEEECSSSCHHHHHHHHTTSCCCC
T ss_pred CCCCCEEEEECCC----EEECC-CC-----CCCCCHHHHHHHHHHCCCCCCCCCCEEEEEECCCCHHHHHHHHHCCCCCC
T ss_conf 8888528998487----24068-88-----76089999999875448998888766999966710999999996189987
Q ss_pred CCCCCCH------HHHHHHHHCCC----CCHHHHHHHHC-------CCCCHHHHHHHHHHHHHHCCCC-CCC---CCCHH
Q ss_conf 2234810------02468651586----87899987406-------9998244999999999826436-899---86700
Q 001817 721 LLRTPLQ------SLCLQIKSLQL----GSISEFLSRAL-------QPPEPLSVKNAIEYLQIIGALD-ENE---NLTVL 779 (1009)
Q Consensus 721 i~r~~L~------~~~L~lk~l~~----~~i~~fl~~~l-------~pp~~~~i~~al~~L~~lgald-~~~---~lT~l 779 (1009)
+ ...+. ..++.....+. .++.+|+...+ +++..+.+..+++.|...|+|+ .++ .+|++
T Consensus 404 i-~s~l~~~~~l~~~ll~~i~~~~~~~~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~L~~~~~i~~~~~~~~~~t~l 482 (720)
T 2zj8_A 404 L-FSQLSNESNLRSQVLALIATFGYSTVEEILKFISNTFYAYQRKDTYSLEEKIRNILYFLLENEFIEISLEDKIRPLSL 482 (720)
T ss_dssp C-CCCTTCHHHHHHHHHHHHHHSCCCSHHHHHHHHHTSHHHHHCSCCHHHHHHHHHHHHHHHHTTSEEECTTSCEEECHH
T ss_pred C-EEECCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCHHHHHCCCHHHHHHHHHHHHHHHHHCCCEEECCCCCEEECHH
T ss_conf 1-765686043999999999717788999999999827687743645789999999999999887935778982755769
Q ss_pred HHHCCCCCCCHHHHHHHHHHHHH----CCCCHHHHHHHHHCC-CCCCCCCCCHHHHHH
Q ss_conf 10001587880589999985460----794069999974047-986446867089999
Q 001817 780 GRNLSMLPVEPKLGKMLILGAIF----NCLDPVMTVVAGLSV-RDPFLMPFDKKDLAE 832 (1009)
Q Consensus 780 G~~ls~lPi~p~~~k~ll~~~~~----~cl~~~l~Iaa~ls~-~~~f~~p~~~~~~~~ 832 (1009)
|++++.+|++|..+++++.+... .|...++.|+|+++. .+.|+.+.+.....+
T Consensus 483 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~e~~~i~~r~~e~~~l~~ 540 (720)
T 2zj8_A 483 GIRTAKLYIDPYTAKMFKDKMEEVVKDPNPIGIFHLISLTPDITPFNYSKREFERLEE 540 (720)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHHHSCCHHHHHHHHHTSTTCCCCCCCHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCCCHHHHHHHHH
T ss_conf 9999997389999999999987642589888999975058532126637778999999
No 5
>3i4u_A ATP-dependent RNA helicase DHX8; splicing, ATP-binding, hydrolase, mRNA processing, splicing, nucleotide-binding, nucleus, phosphoprotein, SPLI; 2.10A {Homo sapiens}
Probab=1.00 E-value=1 Score=383.30 Aligned_cols=247 Identities=28% Similarity=0.472 Sum_probs=220.2
Q ss_pred CCHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHCCC
Q ss_conf 87899987406999824499999999982643689986700100015878805899999854607940699999740479
Q 001817 739 GSISEFLSRALQPPEPLSVKNAIEYLQIIGALDENENLTVLGRNLSMLPVEPKLGKMLILGAIFNCLDPVMTVVAGLSVR 818 (1009)
Q Consensus 739 ~~i~~fl~~~l~pp~~~~i~~al~~L~~lgald~~~~lT~lG~~ls~lPi~p~~~k~ll~~~~~~cl~~~l~Iaa~ls~~ 818 (1009)
++...+|..++|||+..++..|++.|..+||||++|+||++|+.|+.||+||++||||+.|..++|++++++|+|+|+++
T Consensus 2 g~~~~~l~~~ldpP~~~~l~~A~~~L~~LgAld~~g~lT~lG~~ma~lPl~P~lakmLl~a~~~~c~~~~l~iaA~Ls~~ 81 (270)
T 3i4u_A 2 GDRGPEFELGTRGSPMETLITAMEQLYTLGALDDEGLLTRLGRRMAEFPLEPMLCKMLIMSVHLGCSEEMLTIVSMLSVQ 81 (270)
T ss_dssp ------------CCHHHHHHHHHHHHHHHTSBCTTSCBCHHHHHHTTSCSCHHHHHHHHHHHHTTCHHHHHHHHHHHTSS
T ss_pred CCCHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCC
T ss_conf 98410266689994999999999999986894799982689999971899879999999821238899999999997798
Q ss_pred CCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 86446867089999998430359823299999999999998510542466987039989899999989999999998699
Q 001817 819 DPFLMPFDKKDLAESAKAQFSARDYSDHLALVRAYDGWKDAERHQSGYEYCWKNFLSAQTLKAIDSLRKQFLFLLKDAGL 898 (1009)
Q Consensus 819 ~~f~~p~~~~~~~~~~r~~f~~~~~sD~l~~l~~f~~~~~~~~~~~~~~~c~~~~l~~~~l~~~~~lr~Ql~~~l~~~gl 898 (1009)
+||+.|.++++.++.+|.+|. +..|||++++|+|++|.+.. ...+||++||||+++|+++.++|+||.+++.+.++
T Consensus 82 ~~f~~p~~~~~~a~~~~~~f~-~~~sD~ltlLn~~~~~~~~~---~~~~wC~~~fL~~~~l~~~~~ir~QL~~~l~~~~~ 157 (270)
T 3i4u_A 82 NVFYRPKDKQALADQKKAKFH-QTEGDHLTLLAVYNSWKNNK---FSNPWCYENFIQARSLRRAQDIRKQMLGIMDRHKL 157 (270)
T ss_dssp CCBCCCGGGHHHHHHHHHTTC-BTTBHHHHHHHHHHHHHHTT---TCHHHHHHTTBCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCCCCHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHHHCC---CHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 634597236999999998735-88876999999999999737---53668988448999999999999999998987399
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECCC-EEEEECCCCCCCCCCCCCCEEEEEEEHHCCC
Q ss_conf 889876789999787999999983068994212356543016740398-7999047878999999999389950002144
Q 001817 899 VDRNTENCNKWSHDEHLIRAVICAGLFPGLCSVVNKEKSIALKTMEDG-QVLLYSNSVNAGVPKIPYPWLVFNEKIKVNS 977 (1009)
Q Consensus 899 ~~~~~~~~~~~s~~~~lira~l~ag~ypnva~~~~~~~~~~~~t~~~~-~v~iHPsSv~~~~~~~~~~~ivy~E~~~tsk 977 (1009)
... ..+.++..|++|||+|||+|+|+... ...|+++.++ .|.|||+|++++. +|+||||+|++.|++
T Consensus 158 ~~~------s~~~~~~~i~~~L~aG~~~nvA~~~~---~~~Y~~~~~~~~v~iHPsS~L~~~---~p~wvvy~Elv~Tsk 225 (270)
T 3i4u_A 158 DVV------SCGKSTVRVQKAICSGFFRNAAKKDP---QEGYRTLIDQQVVYIHPSSALFNR---QPEWVVYHELVLTTK 225 (270)
T ss_dssp CCC------CCTTCTHHHHHHHHHHHGGGEEEECS---SSSEEETTTCCEEEECTTSTTTTS---CCSEEEEEEEEESSS
T ss_pred CCC------CCCCHHHHHHHHHHHHHHHHHHEECC---CCCEEECCCCCEEEECCHHHHCCC---CCCEEEEEEHHHHHH
T ss_conf 867------77216899999999984887822378---886687158977998850453089---998799985564147
Q ss_pred CEEEECCCCCHHHHHHHCCCCCCC
Q ss_conf 244311444978999730834447
Q 001817 978 VFLRDSTGVSDSVLLLFGGNISRG 1001 (1009)
Q Consensus 978 ~yir~~T~I~p~~L~lfgg~l~~~ 1001 (1009)
.|||++|+|+|.||..+++++...
T Consensus 226 ~y~r~vt~I~p~wL~~~ap~~~~~ 249 (270)
T 3i4u_A 226 EYMREVTTIDPRWLVEFAPAFFKV 249 (270)
T ss_dssp EEEEEEEECCHHHHHHHCTTTEEC
T ss_pred HHHHHCCCCCHHHHHHHHHHHHCC
T ss_conf 687740016899999984887340
No 6
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=1.00 E-value=1 Score=381.39 Aligned_cols=463 Identities=13% Similarity=0.113 Sum_probs=305.5
Q ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHHHHHH
Q ss_conf 48799863189989999999999981993999923898524029899999999970399609996304899999999999
Q 001817 287 GQKMLEFRRSLPSYKERDALLKAISENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERV 366 (1009)
Q Consensus 287 ~~~~~~~r~~lP~~~~q~~il~~i~~~~~vII~apTGSGKTt~~p~~ile~~~~~~~~~~~~Iiv~~P~R~la~qva~rv 366 (1009)
+..+...+...+...|++.+...+..+++++++||||||||+++.+++++.+... .+.+++|++|+|+||.|+++.+
T Consensus 916 ~e~l~~~~f~~fnpiQ~q~~~~l~~~~~nvlv~APTGSGKTliaelail~~l~~~---~~~kavyi~P~raLa~q~~~~~ 992 (1724)
T 4f92_B 916 FESLYQDKFPFFNPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQS---SEGRCVYITPMEALAEQVYMDW 992 (1724)
T ss_dssp HHTTTTTTCSBCCHHHHHHHHHHHSCCSCEEEECCTTSCCHHHHHHHHHHHHHHC---TTCCEEEECSCHHHHHHHHHHH
T ss_pred HHHHHHHCCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHHC---CCCEEEEECCHHHHHHHHHHHH
T ss_conf 9999972678999799999999966899689993798874699999999999858---9987999868299999999999
Q ss_pred HHHHCCCCCCEEEEEEEECC---CCCCCCEEEEECCHHHHHHHHCCC---CCCCCCEEEEECCCC----CCCCCHHHHHH
Q ss_conf 99959944645423663035---448993799980299999980398---999931899908876----77760289999
Q 001817 367 AAERGEKLGESVGYKVRLEG---MKGRDTRLMFCTTGILLRRLLVDR---SLRGVTHVIVDEIHE----RGMNEDFLLIV 436 (1009)
Q Consensus 367 ~~e~g~~~g~~vGy~ir~e~---~~~~~t~Iiv~T~g~Ll~~L~~~~---~l~~is~IIIDEvHe----R~~~~d~ll~l 436 (1009)
.+.++...|..|+..+.... ....+++|+|||||.+...+.+.. .+.++++||+||+|. ||...+..+..
T Consensus 993 ~~~f~~~~g~~V~~ltGd~~~~~~~~~~~~IiV~TPEkld~llr~~~~~~~l~~v~lvViDE~H~l~d~rg~~le~il~r 1072 (1724)
T 4f92_B 993 YEKFQDRLNKKVVLLTGETSTDLKLLGKGNIIISTPEKWDILSRRWKQRKNVQNINLFVVDEVHLIGGENGPVLEVICSR 1072 (1724)
T ss_dssp HHHHTTTSCCCEEECCSCHHHHHHHHHHCSEEEECHHHHHHHHTTTTTCHHHHSCSEEEECCGGGGGSTTHHHHHHHHHH
T ss_pred HHHHCHHCCCEEEEEECCCCCCHHHCCCCCEEEECHHHHHHHHHCCCCCCCCCEEEEEEEECHHHCCCCCCCCHHHHHHH
T ss_conf 99844220978999979978121115899999988799999983844464135231897010110478787639999999
Q ss_pred HHHHCC-CCCCCCEEEECCCC-CHHHHHHHHCCCC--EECCCC--CCCCEEEEEHHHHHHHHHHCCCCCCCCCCCHHHHH
Q ss_conf 998754-49777199832578-7788972309999--213698--40140567515488885420576665552013457
Q 001817 437 LKELLP-RRPELRLILMSATL-NAELFSSYFGGAP--MLHIPG--FTYPVRAYFLENILEMTRYRLNTYNQIDDYGQEKS 510 (1009)
Q Consensus 437 lk~ll~-~~~~lkiIlmSATl-~~~~l~~yf~~~p--vi~i~g--r~~pv~~~yl~~i~~~~~~~~~~~~~i~~~~~e~~ 510 (1009)
++.+.. ..+++|+|+||||+ |++.+++|++..+ +..+.. |..|.+.+.... ... ......
T Consensus 1073 l~~i~~~~~~~~riI~lSATl~N~~dla~WL~~~~~~~~~~~~~~RPvpL~~~i~~~-------~~~-------~~~~~~ 1138 (1724)
T 4f92_B 1073 MRYISSQIERPIRIVALSSSLSNAKDVAHWLGCSATSTFNFHPNVRPVPLELHIQGF-------NIS-------HTQTRL 1138 (1724)
T ss_dssp HHHHHHTTSSCCEEEEEESCBTTHHHHHHHHTCCSTTEEECCGGGCSSCEEEEEEEE-------CCC-------SHHHHH
T ss_pred HHHHHHHCCCCCEEEEEECCCCCHHHHHHHHCCCCCCEEEECCCCCCCCEEEEEEEC-------CCC-------CCHHHH
T ss_conf 999986368886399992888999999998679987758948888888708999803-------677-------716666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEECCCHHHH
Q ss_conf 88899999998645547999999999721100113322002468999866223999999998615999699991887589
Q 001817 511 WKMQKQALALRKRKSSIASAVEDALEAADFREYSVQTQQSLSCWNPDSIGFNLIEHVLCHIVKKERPGAVLVFMTGWDDI 590 (1009)
Q Consensus 511 ~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~li~~ll~~i~~~~~~g~iLVFl~~~~~i 590 (1009)
. . +...+...+.+....+++|||++++..+
T Consensus 1139 ----------~-------~---------------------------------~~~~~~~~i~~~~~~~~~lVF~~sR~~~ 1168 (1724)
T 4f92_B 1139 ----------L-------S---------------------------------MAKPVYHAITKHSPKKPVIVFVPSRKQT 1168 (1724)
T ss_dssp ----------H-------T---------------------------------THHHHHHHHHHHCSSSCEEEEESSHHHH
T ss_pred ----------H-------H---------------------------------HCCHHHHHHHHHCCCCCEEEECCCHHHH
T ss_conf ----------5-------3---------------------------------2014999999853799721557888999
Q ss_pred HHHHHHHHCCC--------CC--------------CC-----CCCEEEEEECCCCCHHHHHHHCCCCCCCCEEEEEECCC
Q ss_conf 99999998299--------99--------------99-----99729998049999888986319999996189996472
Q 001817 591 NSLKDQLQAHP--------LL--------------GD-----PSRVLLLACHGSMASSEQRLIFDKPEDGVRKIVLATNM 643 (1009)
Q Consensus 591 ~~l~~~L~~~~--------~~--------------~~-----~~~~~v~~lHs~l~~~er~~v~~~f~~G~~kVIvATni 643 (1009)
+.++..|.... .. .+ ....+|++|||+|++.+|+.+++.|++|.++||+||++
T Consensus 1169 ~~~A~~L~~~~~~~~~~~~~~~~~~~~l~~~l~~~~d~~L~~~l~~GIa~hHagL~~~~R~~VE~lF~~G~i~VLvaT~t 1248 (1724)
T 4f92_B 1169 RLTAIDILTTCAADIQRQRFLHCTEKDLIPYLEKLSDSTLKETLLNGVGYLHEGLSPMERRLVEQLFSSGAIQVVVASRS 1248 (1724)
T ss_dssp HHHHHHHHHHHHHTTCTTTTBCSCHHHHHHHHTTCCCHHHHHHHHTTEEEECTTSCHHHHHHHHHHHHHTSBCEEEEEGG
T ss_pred HHHHHHHHHHHHHCCCHHHHHCCCHHHHHHHHHHCCCHHHHHHHHCCEEEECCCCCHHHHHHHHHHHHCCCCEEEEECHH
T ss_conf 99999999887626430222013399999998641428899987478899779999999999999997799849998869
Q ss_pred CCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCC---CCCEEEECCHHHH---HHHCCCC
Q ss_conf 001568897559994798864113578997866641237976995500039989---9907992252126---5310499
Q 001817 644 AETSITINDVVFVIDCGKAKETSYDALNNTPCLLPSWISKAAARQRRGRAGRVQ---PGECYHLYPRYVY---DAFADYQ 717 (1009)
Q Consensus 644 ae~GIdIp~V~~VId~g~~k~~~yd~~~~~~~l~~~~iS~a~~~QR~GRAGR~~---~G~cy~L~t~~~~---~~l~~~~ 717 (1009)
+++|||+|++.+||.. ...||..... ..+.+..+|.||+|||||.| .|.|+.++..... +.+...
T Consensus 1249 lA~GVnlPa~~VVI~~----~~~~dg~~~~----~~~~s~~~~~Qm~GRAGR~g~d~~G~avll~~~~~~~~~~~ll~~- 1319 (1724)
T 4f92_B 1249 LCWGMNVAAHLVIIMD----TQYYNGKIHA----YVDYPIYDVLQMVGHANRPLQDDEGRCVIMCQGSKKDFFKKFLYE- 1319 (1724)
T ss_dssp GSSSCCCCBSEEEEEC----SEEEETTTTE----EEECCHHHHHHHHTTBCCTTTCSCEEEEEEEEGGGHHHHHHHTTS-
T ss_pred HHCCCCCCCCEEEEEC----CCCCCCCCCC----CCCCCHHHHHHHHCCCCCCCCCCCEEEEEEECCHHHHHHHHHHCC-
T ss_conf 9757898861899956----7113675556----677999999976151357887886289999654577899997379-
Q ss_pred CCCCCCCCCHH----HHHHHHHCC-C---CCHHHHHHHHC------CCC----------------CHHHHHHHHHHHHHH
Q ss_conf 96322348100----246865158-6---87899987406------999----------------824499999999982
Q 001817 718 LPELLRTPLQS----LCLQIKSLQ-L---GSISEFLSRAL------QPP----------------EPLSVKNAIEYLQII 767 (1009)
Q Consensus 718 ~PEi~r~~L~~----~~L~lk~l~-~---~~i~~fl~~~l------~pp----------------~~~~i~~al~~L~~l 767 (1009)
|+...+.|.. ..+.....+ + .++.+|+..++ ..| -.+.++.+++.|.+.
T Consensus 1320 -~~pveS~L~~~l~~~l~~eI~~~~i~~~~d~~~~l~~Tfl~~r~~~nP~~y~l~~~~~~~~~~~l~~lv~~~l~~L~~~ 1398 (1724)
T 4f92_B 1320 -PLPVESHLDHCMHDHFNAEIVTKTIENKQDAVDYLTWTFLYRRMTQNPNYYNLQGISHRHLSDHLSELVEQTLSDLEQS 1398 (1724)
T ss_dssp -CBCCCCCGGGSCHHHHHHHHHTTSCCBHHHHHHHHTTSSHHHHHHHSGGGTTCSCCSHHHHHHHHHHHHHHHHHHHHHT
T ss_pred -CCCEEEECCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_conf -9703545441117899999985434889999999973079998730732025665335567899999999999999988
Q ss_pred CCCC--CCC--CCCHHHHHCCCCCCCHHHHHHHHHHHHHCC-CCHHHHHHHHH-CCCCCCCCCCC
Q ss_conf 6436--899--867001000158788058999998546079-40699999740-47986446867
Q 001817 768 GALD--ENE--NLTVLGRNLSMLPVEPKLGKMLILGAIFNC-LDPVMTVVAGL-SVRDPFLMPFD 826 (1009)
Q Consensus 768 gald--~~~--~lT~lG~~ls~lPi~p~~~k~ll~~~~~~c-l~~~l~Iaa~l-s~~~~f~~p~~ 826 (1009)
|+|. +++ .+|++|++++.++++|..++++..+..-++ +..++.+.|.. .+.+..+...+
T Consensus 1399 ~~I~~~~~~~l~~T~lG~i~s~~yi~~~t~~~~~~~l~~~~~~~~~L~il~~a~ef~~i~~R~~E 1463 (1724)
T 4f92_B 1399 KCISIEDEMDVAPLNLGMIAAYYYINYTTIELFSMSLNAKTKVRGLIEIISNAAEYENIPIRHHE 1463 (1724)
T ss_dssp TSEEEETTTEEEECHHHHHHHHTTCCHHHHHHHHHHCCTTCCHHHHHHHHHTSGGGTTCCCCTTH
T ss_pred CCEEECCCCCEEECHHHHHHHHHCCCHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCCCCCCCH
T ss_conf 89998699878666899999997789999999998544369888899884078454566436068
No 7
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=1.00 E-value=1 Score=373.58 Aligned_cols=459 Identities=18% Similarity=0.166 Sum_probs=298.2
Q ss_pred CCCHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHHHH------CCCCEEEEECHHHHHHHHHHHHHHHHHH
Q ss_conf 9989999999999981993999923898524029899999999970------3996099963048999999999999995
Q 001817 297 LPSYKERDALLKAISENQVVVVSGETGCGKTTQLPQYILESETEAA------RGAACSIICTQPRRISAMAVSERVAAER 370 (1009)
Q Consensus 297 lP~~~~q~~il~~i~~~~~vII~apTGSGKTt~~p~~ile~~~~~~------~~~~~~Iiv~~P~R~la~qva~rv~~e~ 370 (1009)
-+...|.+.+..++..+++++++||||||||+.+.+++++.+.... ...+.++++++|+|+||.|+.+.+.+.+
T Consensus 79 ~ln~iQs~~~~~al~~~~N~lv~APTGsGKTlva~l~il~~l~~~~~~~~~~~~~~~k~lyiaP~kALa~e~~~~l~~~~ 158 (1724)
T 4f92_B 79 TLNRIQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQEMVGSFGKRL 158 (1724)
T ss_dssp BCCHHHHHTHHHHHTCCCCEEEECCTTSCCHHHHHHHHHHHHGGGCCTTSSCCTTSCEEEEECSSHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHH
T ss_conf 99999999999997589939999688146999999999999986234344445799889998997999999999999777
Q ss_pred CCCCCCEEEEEEEECC---CCCCCCEEEEECCHHHHHHHHCCC---CCCCCCEEEEECCC----CCCCCCHHHHHHHHHH
Q ss_conf 9944645423663035---448993799980299999980398---99993189990887----6777602899999987
Q 001817 371 GEKLGESVGYKVRLEG---MKGRDTRLMFCTTGILLRRLLVDR---SLRGVTHVIVDEIH----ERGMNEDFLLIVLKEL 440 (1009)
Q Consensus 371 g~~~g~~vGy~ir~e~---~~~~~t~Iiv~T~g~Ll~~L~~~~---~l~~is~IIIDEvH----eR~~~~d~ll~llk~l 440 (1009)
+. .|..|+-.++... ....+++|+||||+.+-..+.+.. +++++++|||||+| +||...+.++..+...
T Consensus 159 ~~-~gi~V~~~tGd~~~~~~~~~~~~IlVtTpEkld~llr~~~~~~~l~~v~~vIiDEvH~l~d~RG~~lE~~l~rl~~~ 237 (1724)
T 4f92_B 159 AT-YGITVAELTGDHQLCKEEISATQIIVCTPEKWDIITRKGGERTYTQLVRLIILDEIHLLHDDRGPVLEALVARAIRN 237 (1724)
T ss_dssp TT-TTCCEEECCSSCSSCCTTGGGCSEEEECHHHHHHHTTSSTTHHHHTTEEEEEETTGGGGGSTTHHHHHHHHHHHHHH
T ss_pred HH-CCCEEEEEECCCCCCCCCCCCCCEEEECHHHHHHHHCCCCCCHHHCCCCEEEEECCHHCCCCCHHHHHHHHHHHHHH
T ss_conf 54-79889999799888714358999999887999999758853044547588999555442995679999999999999
Q ss_pred C-CCCCCCCEEEECCCC-CHHHHHHHHCCCC---EECCCC--CCCCEEEEEHHHHHHHHHHCCCCCCCCCCCHHHHHHHH
Q ss_conf 5-449777199832578-7788972309999---213698--40140567515488885420576665552013457888
Q 001817 441 L-PRRPELRLILMSATL-NAELFSSYFGGAP---MLHIPG--FTYPVRAYFLENILEMTRYRLNTYNQIDDYGQEKSWKM 513 (1009)
Q Consensus 441 l-~~~~~lkiIlmSATl-~~~~l~~yf~~~p---vi~i~g--r~~pv~~~yl~~i~~~~~~~~~~~~~i~~~~~e~~~~~ 513 (1009)
. ...+++|+|+||||+ |.+.+++|++..+ ...+.. |..|.+.++... ........+
T Consensus 238 ~~~~~~~~riI~LSATl~N~~dvA~wL~~~~~~~~~~~~~~~RPvpL~~~~~~~---------------~~~~~~~~~-- 300 (1724)
T 4f92_B 238 IEMTQEDVRLIGLSATLPNYEDVATFLRVDPAKGLFYFDNSFRPVPLEQTYVGI---------------TEKKAIKRF-- 300 (1724)
T ss_dssp HHHHTCCCEEEEEECSCTTHHHHHHHTTCCHHHHEEECCGGGCSSCEEEECCEE---------------CCCCHHHHH--
T ss_pred HHHCCCCCCEEEEECCCCCHHHHHHHHCCCCCCCEEEECCCCCCCCCEEEEECC---------------CCCCHHHHH--
T ss_conf 973799980999954569999999986788888869979997667317999656---------------875414566--
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCCCCCCCHHHHHHHHH-HHHHHCCCCCEEEECCCHHHHHH
Q ss_conf 99999998645547999999999721100113322002468999866223999999-99861599969999188758999
Q 001817 514 QKQALALRKRKSSIASAVEDALEAADFREYSVQTQQSLSCWNPDSIGFNLIEHVLC-HIVKKERPGAVLVFMTGWDDINS 592 (1009)
Q Consensus 514 ~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~li~~ll~-~i~~~~~~g~iLVFl~~~~~i~~ 592 (1009)
..+. ..+. .+.+....+++||||++++.++.
T Consensus 301 ---------------~~~~---------------------------------~~~~~~v~~~~~~~~~LVF~~sR~~~~~ 332 (1724)
T 4f92_B 301 ---------------QIMN---------------------------------EIVYEKIMEHAGKNQVLVFVHSRKETGK 332 (1724)
T ss_dssp ---------------HHHH---------------------------------HHHHHHHTTCCSSCCEEEECSSTTTTHH
T ss_pred ---------------HHHH---------------------------------HHHHHHHHHHHCCCCEEEECCCHHHHHH
T ss_conf ---------------7788---------------------------------9999999997569968998788899999
Q ss_pred HHHHHHCCC----C----CC----------------------CCCCEEEEEECCCCCHHHHHHHCCCCCCCCEEEEEECC
Q ss_conf 999998299----9----99----------------------99972999804999988898631999999618999647
Q 001817 593 LKDQLQAHP----L----LG----------------------DPSRVLLLACHGSMASSEQRLIFDKPEDGVRKIVLATN 642 (1009)
Q Consensus 593 l~~~L~~~~----~----~~----------------------~~~~~~v~~lHs~l~~~er~~v~~~f~~G~~kVIvATn 642 (1009)
++..|.... . .. .....+|++|||+|+.++|..+++.|++|.++||+||+
T Consensus 333 ~A~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Gva~HHagL~~~~R~~vE~~F~~G~i~vlvaTs 412 (1724)
T 4f92_B 333 TARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPYGFAIHHAGMTRVDRTLVEDLFADKHIQVLVSTA 412 (1724)
T ss_dssp HHHHHHHHHHHTTSTTCCSSCCTTCSSHHHHTTSCCSTHHHHHHTTTTEEEECSSSCTHHHHHHHHHHHTTCCCEEEECH
T ss_pred HHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHCCEEEECCCCCHHHHHHHHHHHHCCCCEEEEECC
T ss_conf 99999998764552122133330578887766402444889998645778875999999999999998779974999842
Q ss_pred CCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCC---CCCEEEECCHHH---HHHHCCC
Q ss_conf 2001568897559994798864113578997866641237976995500039989---990799225212---6531049
Q 001817 643 MAETSITINDVVFVIDCGKAKETSYDALNNTPCLLPSWISKAAARQRRGRAGRVQ---PGECYHLYPRYV---YDAFADY 716 (1009)
Q Consensus 643 iae~GIdIp~V~~VId~g~~k~~~yd~~~~~~~l~~~~iS~a~~~QR~GRAGR~~---~G~cy~L~t~~~---~~~l~~~ 716 (1009)
++++|||+|++.+||.. ...||+..+.. .++|.+++.||+|||||.| .|.++.+.+... |..+...
T Consensus 413 TLa~GVNlPa~~vVI~~----~~~~~~~~~~~----~~ls~~~~~Qm~GRAGR~g~d~~G~~ii~~~~~~~~~~~~ll~~ 484 (1724)
T 4f92_B 413 TLAWGVNLPAHTVIIKG----TQVYSPEKGRW----TELGALDILQMLGRAGRPQYDTKGEGILITSHGELQYYLSLLNQ 484 (1724)
T ss_dssp HHHHHSCCCBSEEEEEC----CEEEETTTTEE----EECCHHHHHHHHTTBSCTTTCSCEEEEEEEESTTCCHHHHHTTT
T ss_pred HHHHHCCCCCCEEEEEC----CEEECCCCCCC----CCCCHHHHHHHHHHCCCCCCCCCCEEEEEECCHHHHHHHHHHCC
T ss_conf 66713888870699828----87704767875----63899999876401268888876479998350259999999749
Q ss_pred CCC-C-CCCCCCHHHHHHHHHCC-CC---CHHHHHHHHC------CCC-------------------CHHHHHHHHHHHH
Q ss_conf 996-3-22348100246865158-68---7899987406------999-------------------8244999999999
Q 001817 717 QLP-E-LLRTPLQSLCLQIKSLQ-LG---SISEFLSRAL------QPP-------------------EPLSVKNAIEYLQ 765 (1009)
Q Consensus 717 ~~P-E-i~r~~L~~~~L~lk~l~-~~---~i~~fl~~~l------~pp-------------------~~~~i~~al~~L~ 765 (1009)
..| | -+...+.+.+.....++ +. +..+|+..++ ..| ..+.+..++..|.
T Consensus 485 ~~pieS~l~~~l~d~L~aeI~~g~i~~~~~a~~~l~~T~~~~r~~~~p~~y~~~~~~~~~d~~l~~~~~~~i~~~~~~L~ 564 (1724)
T 4f92_B 485 QLPIESQMVSKLPDMLNAEIVLGNVQNAKDAVNWLGYAYLYIRMLRSPTLYGISHDDLKGDPLLDQRRLDLVHTAALMLD 564 (1724)
T ss_dssp CSCCCCCTTTTHHHHHHHHHHHTSCCBHHHHHHHHHHSHHHHHHHHCTTTTTCCHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHCCHHHHHHHHCHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 98510203310788999999870247899999999643788775327465436710012363789999999999999998
Q ss_pred HHCCCCCC---C--CCCHHHHHCCCCCCCHHHHHHHHHHHHHCCCC-HHHHHHHHHC-CCCCCCCCCCHHH
Q ss_conf 82643689---9--86700100015878805899999854607940-6999997404-7986446867089
Q 001817 766 IIGALDEN---E--NLTVLGRNLSMLPVEPKLGKMLILGAIFNCLD-PVMTVVAGLS-VRDPFLMPFDKKD 829 (1009)
Q Consensus 766 ~lgald~~---~--~lT~lG~~ls~lPi~p~~~k~ll~~~~~~cl~-~~l~Iaa~ls-~~~~f~~p~~~~~ 829 (1009)
+.|+|..+ + .+|++|+++|++++++...+.+.....-.+.+ .++.+.|..+ +.++.+...++.+
T Consensus 565 ~~~li~~d~~~~~~~~T~lGr~~s~~yi~~~t~~~~~~~l~~~~~~~~ll~~is~s~ef~~i~~R~~E~~~ 635 (1724)
T 4f92_B 565 KNNLVKYDKKTGNFQVTELGRIASHYYITNDTVQTYNQLLKPTLSEIELFRVFSLSSEFKNITVREEEKLE 635 (1724)
T ss_dssp HTTSEEECTTTCBEEECHHHHHHHHTTCCHHHHHHHHHHCCTTCCHHHHHHHHHTCGGGTTCCCCGGGHHH
T ss_pred HCCCEEEECCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHCCCCCCHHHHHHHHHCCHHHCCCCCCHHHHHH
T ss_conf 87990140677864344487999983689999999986358889999999997577521667707789999
No 8
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=354.69 Aligned_cols=378 Identities=20% Similarity=0.210 Sum_probs=246.9
Q ss_pred HHCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHHHHHHHHHHCC
Q ss_conf 63189989999999999981993999923898524029899999999970399609996304899999999999999599
Q 001817 293 FRRSLPSYKERDALLKAISENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERGE 372 (1009)
Q Consensus 293 ~r~~lP~~~~q~~il~~i~~~~~vII~apTGSGKTt~~p~~ile~~~~~~~~~~~~Iiv~~P~R~la~qva~rv~~e~g~ 372 (1009)
....++.+.+|.+++..+..+++++++||||||||+++.++++..+. .+.+++|++|+|+|+.|+++++...++
T Consensus 179 ~~~~f~ltp~Q~~AI~~i~~g~dvLV~ApTGSGKTlva~l~i~~~l~-----~g~rvlvl~PtraLa~Q~~~~l~~~~~- 252 (1108)
T 3l9o_A 179 RTYPFTLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLK-----NKQRVIYTSPIKALSNQKYRELLAEFG- 252 (1108)
T ss_dssp SCCSSCCCHHHHHHHHHHTTTCCEEEECCSSSHHHHHHHHHHHHHHH-----TTCEEEEEESSHHHHHHHHHHHHHHTS-
T ss_pred HHCCCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHH-----CCCEEEEECCCHHHHHHHHHHHHHHHC-
T ss_conf 84799999999999999976998899889999719999999999975-----597499990849999999999999828-
Q ss_pred CCCCEEEEEEEECCCCCCCCEEEEECCHHHHHHHHCCC-CCCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCCCCCEEE
Q ss_conf 44645423663035448993799980299999980398-99993189990887677760289999998754497771998
Q 001817 373 KLGESVGYKVRLEGMKGRDTRLMFCTTGILLRRLLVDR-SLRGVTHVIVDEIHERGMNEDFLLIVLKELLPRRPELRLIL 451 (1009)
Q Consensus 373 ~~g~~vGy~ir~e~~~~~~t~Iiv~T~g~Ll~~L~~~~-~l~~is~IIIDEvHeR~~~~d~ll~llk~ll~~~~~lkiIl 451 (1009)
.+|+ +.++.....+++|+|+|||+|++.+..+. .+.++++|||||||. ..+.++...+...+....+++++|+
T Consensus 253 ----~Vgl-ltGd~~~~~~~~IlV~Tpe~L~~~L~~~~~~l~~l~lVVIDEaH~-l~d~~rg~~~e~ii~~l~~~~qvl~ 326 (1108)
T 3l9o_A 253 ----DVGL-MTGDITINPDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHY-MRDKERGVVWEETIILLPDKVRYVF 326 (1108)
T ss_dssp ----SEEE-ECSSCBCCCSCSEEEEEHHHHHHHHHHCSSHHHHEEEEEEETGGG-TTSHHHHHHHHHHHHHSCTTSEEEE
T ss_pred ----CCCE-EECCCCCCCCCCEEEECHHHHHHHHHCCCCCCCCCCEEEEHHHHH-CCCCCHHHHHHHHHHHCCCCCEEEE
T ss_conf ----9218-967652689999899676999999974754322378998700212-0230068999999986477764999
Q ss_pred ECCCC-CHHHHHHHHC-----CCCEECCCCCCCCEEEEEHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 32578-7788972309-----99921369840140567515488885420576665552013457888999999986455
Q 001817 452 MSATL-NAELFSSYFG-----GAPMLHIPGFTYPVRAYFLENILEMTRYRLNTYNQIDDYGQEKSWKMQKQALALRKRKS 525 (1009)
Q Consensus 452 mSATl-~~~~l~~yf~-----~~pvi~i~gr~~pv~~~yl~~i~~~~~~~~~~~~~i~~~~~e~~~~~~~~~~~~~~~~~ 525 (1009)
||||+ +...+++|++ ...++..+.+..|+..++............. ....+... .+. ... .
T Consensus 327 lSATipn~~e~a~~l~~~~~~~~~vi~~~~rp~pl~~~~~~~~~~~~~~~vd---~~~~~~~~-~~~--~~~-------~ 393 (1108)
T 3l9o_A 327 LSATIPNAMEFAEWICKIHSQPCHIVYTNFRPTPLQHYLFPAHGDGIYLVVD---EKSTFREE-NFQ--KAM-------A 393 (1108)
T ss_dssp EECSCSSCHHHHHHHHHHTCSCEEEEEECCCSSCEEEEEEETTSSCCEEEEE---TTTEECHH-HHH--HHH-------T
T ss_pred ECCCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCEEEEEECCCCCEEEEEC---CCCCHHHH-HHH--HHH-------H
T ss_conf 7288898799999998515898279834787554068986247764256414---42201156-689--999-------9
Q ss_pred HHHHHHHHHHHHHHHCCHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHCCCCCCC
Q ss_conf 47999999999721100113322002468999866223999999998615999699991887589999999982999999
Q 001817 526 SIASAVEDALEAADFREYSVQTQQSLSCWNPDSIGFNLIEHVLCHIVKKERPGAVLVFMTGWDDINSLKDQLQAHPLLGD 605 (1009)
Q Consensus 526 ~~~~~v~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~li~~ll~~i~~~~~~g~iLVFl~~~~~i~~l~~~L~~~~~~~~ 605 (1009)
.+................... ..............+..++..+ .....+++|||++++..++.++..|........
T Consensus 394 ~l~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~li~~l-~~~~~~~vIVF~~sr~~~e~la~~L~~~~~~~~ 469 (1108)
T 3l9o_A 394 SISNQIGDDPNSTDSRGKKGQ---TYKGGSAKGDAKGDIYKIVKMI-WKKKYNPVIVFSFSKRDCEELALKMSKLDFNSD 469 (1108)
T ss_dssp TC--------------------------------CHHHHHHHHHHH-HHTTCCCEEEEESCHHHHHHHHHHTCSHHHHCC
T ss_pred HHHHHHCCCCCCCCCCCCCCC---CCCCCCCCCCCHHHHHHHHHHH-HHCCCCCEEEEECCHHHHHHHHHHHHHCCCCCH
T ss_conf 987541133211234332222---3445554432056899999999-962899889995848789999999986469977
Q ss_pred --------------------------------CCCEEEEEECCCCCHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCCE
Q ss_conf --------------------------------997299980499998889863199999961899964720015688975
Q 001817 606 --------------------------------PSRVLLLACHGSMASSEQRLIFDKPEDGVRKIVLATNMAETSITINDV 653 (1009)
Q Consensus 606 --------------------------------~~~~~v~~lHs~l~~~er~~v~~~f~~G~~kVIvATniae~GIdIp~V 653 (1009)
.....|.++||+|++.+|..+++.|++|.++|||||+++++|||||++
T Consensus 470 ~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gV~~~Hg~l~~~~R~~v~~~F~~G~ikVLVAT~vla~GIDiP~v 549 (1108)
T 3l9o_A 470 DEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAK 549 (1108)
T ss_dssp ----CHHHHGGGSCTHHHHHTTCCHHHHHHTHHHHHTEEEECSCSCHHHHHHHHHHHHHTCCCEEEEESCCCSCCCC--C
T ss_pred HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCEEEECCCCCHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCC
T ss_conf 78999999999887504644330056887877651575652589989999999999867998499987277657787874
Q ss_pred EEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCC---CCCEEEECCHHH
Q ss_conf 59994798864113578997866641237976995500039989---990799225212
Q 001817 654 VFVIDCGKAKETSYDALNNTPCLLPSWISKAAARQRRGRAGRVQ---PGECYHLYPRYV 709 (1009)
Q Consensus 654 ~~VId~g~~k~~~yd~~~~~~~l~~~~iS~a~~~QR~GRAGR~~---~G~cy~L~t~~~ 709 (1009)
++||+++.+ ||.. ...|+|.++|.||+|||||.+ .|.||.+++...
T Consensus 550 ~~VI~~~~~----~d~~------~~r~iS~~eyiQr~GRAGR~G~d~~G~~ill~~~~~ 598 (1108)
T 3l9o_A 550 TVVFTSVRK----WDGQ------QFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKM 598 (1108)
T ss_dssp EEEESCSEE----ESSS------CEEECCHHHHHHHHHHSCCSSSCSSEEEEEEECCCC
T ss_pred EEEEECCCC----CCCC------CCCCCCHHHHHHHHCCCCCCCCCCCEEEEEEECCCC
T ss_conf 599965766----6864------456389999997636347789998559999955886
No 9
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=1.00 E-value=1 Score=341.85 Aligned_cols=382 Identities=18% Similarity=0.185 Sum_probs=241.5
Q ss_pred CCCCCHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHHHHHHHHHH-CCC
Q ss_conf 1899899999999999819939999238985240298999999999703996099963048999999999999995-994
Q 001817 295 RSLPSYKERDALLKAISENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAER-GEK 373 (1009)
Q Consensus 295 ~~lP~~~~q~~il~~i~~~~~vII~apTGSGKTt~~p~~ile~~~~~~~~~~~~Iiv~~P~R~la~qva~rv~~e~-g~~ 373 (1009)
..++...+|.+++..+.++++++++||||||||+++..++..... .+.+++|++|+++|+.|+++++...+ +..
T Consensus 36 ~~f~l~~~Q~~aI~~il~g~~vlv~apTGsGKTlv~~~~i~~~~~-----~g~~vlvl~PtraLa~Q~~~~l~~~~~~~~ 110 (997)
T 4a4z_A 36 WPFELDTFQKEAVYHLEQGDSVFVAAHTSAGKTVVAEYAIAMAHR-----NMTKTIYTSPIKALSNQKFRDFKETFDDVN 110 (997)
T ss_dssp CSSCCCHHHHHHHHHHHTTCEEEEECCTTSCSHHHHHHHHHHHHH-----TTCEEEEEESCGGGHHHHHHHHHTTC--CC
T ss_pred CCCCCCHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHH-----CCCEEEEEECCHHHHHHHHHHHHHHCCCCE
T ss_conf 899999999999999984998999979998589999999999983-----598599995879999999999999769983
Q ss_pred CCCEEEEEEEECCCCCCCCEEEEECCHHHHHHHHCCC-CCCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCCCCCEEEE
Q ss_conf 4645423663035448993799980299999980398-999931899908876777602899999987544977719983
Q 001817 374 LGESVGYKVRLEGMKGRDTRLMFCTTGILLRRLLVDR-SLRGVTHVIVDEIHERGMNEDFLLIVLKELLPRRPELRLILM 452 (1009)
Q Consensus 374 ~g~~vGy~ir~e~~~~~~t~Iiv~T~g~Ll~~L~~~~-~l~~is~IIIDEvHeR~~~~d~ll~llk~ll~~~~~lkiIlm 452 (1009)
++...| +......++|+|+||++|++.+.... .+.++++|||||+|. ..+.++...+...+....++.++|+|
T Consensus 111 v~~l~G-----~~~~~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~lvViDEaH~-l~d~~~g~~~e~ii~~l~~~v~iIlL 184 (997)
T 4a4z_A 111 IGLITG-----DVQINPDANCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHY-VNDQDRGVVWEEVIIMLPQHVKFILL 184 (997)
T ss_dssp EEEECS-----SCEECTTSSEEEEEHHHHHHHHHHTCSGGGGEEEEEECCTTC-CCTTCTTCCHHHHHHHSCTTCEEEEE
T ss_pred EEEEEC-----CCCCCCCCCEEEECHHHHHHHHHHCCHHHCCCCEEEEECCCC-CCCCCHHHHHHHHHHHCCCCCCEEEE
T ss_conf 999968-----986679999899889999999981811205788999989546-66654489999999854668878997
Q ss_pred CCCC-CHHHHHHHHC-----CCCEECCCCCCCCEEEEEHHHHHHHHHHCCCCC-CCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 2578-7788972309-----999213698401405675154888854205766-65552013457888999999986455
Q 001817 453 SATL-NAELFSSYFG-----GAPMLHIPGFTYPVRAYFLENILEMTRYRLNTY-NQIDDYGQEKSWKMQKQALALRKRKS 525 (1009)
Q Consensus 453 SATl-~~~~l~~yf~-----~~pvi~i~gr~~pv~~~yl~~i~~~~~~~~~~~-~~i~~~~~e~~~~~~~~~~~~~~~~~ 525 (1009)
|||+ +...|++|++ ...++..+++..|+..++.... ..... .....+ .+..+....... .....
T Consensus 185 SAT~~n~~ef~~~l~~~~~~~~~vi~~~~r~~pl~~~v~~~~------~~~~~~~~~~~~-~~~~~~~~~~~l--~~~~~ 255 (997)
T 4a4z_A 185 SATVPNTYEFANWIGRTKQKNIYVISTPKRPVPLEINIWAKK------ELIPVINQNSEF-LEANFRKHKEIL--NGESA 255 (997)
T ss_dssp ECCCTTHHHHHHHHHHHHTCCEEEEECSSCSSCEEEEEEETT------EEEEEECTTCCB-CHHHHHHHHHHH--C----
T ss_pred CCCCCCHHHHHHHHHCCCCCCEEEEECCCCCCCCEEEEECCC------CCHHCCCCHHHH-HHHHHHHHHHHH--HCCCC
T ss_conf 699897689999983235886599836888756468885487------500000420356-677799999986--32243
Q ss_pred H-HHHHH---HHHH----------HHHH-------HCCHHHH---------HHHCCCCCCCCCCCHHHHHHHHHHHHHHC
Q ss_conf 4-79999---9999----------9721-------1001133---------22002468999866223999999998615
Q 001817 526 S-IASAV---EDAL----------EAAD-------FREYSVQ---------TQQSLSCWNPDSIGFNLIEHVLCHIVKKE 575 (1009)
Q Consensus 526 ~-~~~~v---~~~l----------~~~~-------~~~~~~~---------~~~~l~~~~~~~~~~~li~~ll~~i~~~~ 575 (1009)
. ..... .... .... ..+.... .......+.........+..++ ..+...
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li-~~l~~~ 334 (997)
T 4a4z_A 256 KGAPSKTDNGRGGSTARGGRGGSNTRDGRGGRGNSTRGGANRGGSRGAGAIGSNKRKFFTQDGPSKKTWPEIV-NYLRKR 334 (997)
T ss_dssp -------------------------------------------------------------CCCCTTHHHHHH-HHHHHT
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH-HHHHHC
T ss_conf 3432100000122222344443212354333444445554444433444345665422122466666899999-999847
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCCCC--------------------------------CCCEEEEEECCCCCHHHH
Q ss_conf 999699991887589999999982999999--------------------------------997299980499998889
Q 001817 576 RPGAVLVFMTGWDDINSLKDQLQAHPLLGD--------------------------------PSRVLLLACHGSMASSEQ 623 (1009)
Q Consensus 576 ~~g~iLVFl~~~~~i~~l~~~L~~~~~~~~--------------------------------~~~~~v~~lHs~l~~~er 623 (1009)
..+++|||++++++++.++..|........ .....+.++||+|++.+|
T Consensus 335 ~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~H~gl~~~~R 414 (997)
T 4a4z_A 335 ELLPMVVFVFSKKRCEEYADWLEGINFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLLERGIAVHHGGLLPIVK 414 (997)
T ss_dssp TCCSEEEECSCHHHHHHHHHTTTTCCCCCHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHHHHTTTEEEECTTSCHHHH
T ss_pred CCCCEEEEECCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCHHHHCCHHHHHHHHHHHCCEEEECCCCCHHHH
T ss_conf 99978999898889999999984579997788999999999999744654421124787888863684662499999999
Q ss_pred HHHCCCCCCCCEEEEEECCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCC---CCC
Q ss_conf 86319999996189996472001568897559994798864113578997866641237976995500039989---990
Q 001817 624 RLIFDKPEDGVRKIVLATNMAETSITINDVVFVIDCGKAKETSYDALNNTPCLLPSWISKAAARQRRGRAGRVQ---PGE 700 (1009)
Q Consensus 624 ~~v~~~f~~G~~kVIvATniae~GIdIp~V~~VId~g~~k~~~yd~~~~~~~l~~~~iS~a~~~QR~GRAGR~~---~G~ 700 (1009)
..+++.|+.|.++|||||+++++|||+|+ +.||..+.++ ||... ..|+|..+|.||+|||||.| .|.
T Consensus 415 ~~v~~~F~~G~~kVLvAT~~~a~GIDiP~-~~VVi~~~~k---~dg~~------~~~~s~~~y~Qr~GRAGR~G~~~~G~ 484 (997)
T 4a4z_A 415 ELIEILFSKGFIKVLFATETFAMGLNLPT-RTVIFSSIRK---HDGNG------LRELTPGEFTQMAGRAGRRGLDSTGT 484 (997)
T ss_dssp HHHHHHHHTTCCSEEEECTHHHHSCCCCC-SEEEESCSEE---EETTE------EEECCHHHHHHHHGGGCCTTTCSSEE
T ss_pred HHHHHHHHCCCCCEEEECHHHHCCCCCCC-CEEEEECCCC---CCCCC------CCCCCHHHHHHHHCCCCCCCCCCCEE
T ss_conf 99999997799839997208667798888-6699940532---46766------77799999827741335688776359
Q ss_pred EEEECCH
Q ss_conf 7992252
Q 001817 701 CYHLYPR 707 (1009)
Q Consensus 701 cy~L~t~ 707 (1009)
||.++..
T Consensus 485 vi~l~~~ 491 (997)
T 4a4z_A 485 VIVMAYN 491 (997)
T ss_dssp EEEECCS
T ss_pred EEEECCC
T ss_conf 9996488
No 10
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=1.00 E-value=1 Score=337.85 Aligned_cols=303 Identities=18% Similarity=0.185 Sum_probs=226.2
Q ss_pred HHHHHCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHHHHHHHHH
Q ss_conf 99863189989999999999981993999923898524029899999999970399609996304899999999999999
Q 001817 290 MLEFRRSLPSYKERDALLKAISENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAE 369 (1009)
Q Consensus 290 ~~~~r~~lP~~~~q~~il~~i~~~~~vII~apTGSGKTt~~p~~ile~~~~~~~~~~~~Iiv~~P~R~la~qva~rv~~e 369 (1009)
.++.+..+|++.+|++++..+.++++++++||||||||+++++++++ + +.+++|++|+|++|.|+++++++.
T Consensus 209 ~l~~r~~lP~~~~q~~i~~~L~~~~~vlv~ApTGSGKT~a~~l~ll~------~--g~~vLVl~PTReLA~Qia~~l~~~ 280 (666)
T 3o8b_A 209 SMETTMRSPVFTDNSSPPAVPQSFQVAHLHAPTGSGKSTKVPAAYAA------Q--GYKVLVLNPSVAATLGFGAYMSKA 280 (666)
T ss_dssp HHHHHHHSCSCCCCCSCCCCCSSCEEEEEECCTTSCTTTHHHHHHHH------T--TCCEEEEESCHHHHHHHHHHHHHH
T ss_pred HHHHHCCCCCHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHH------C--CCEEEEECCHHHHHHHHHHHHHHH
T ss_conf 65430259759999999999976984999918951499999999997------8--996999965499999999999998
Q ss_pred HCCCCCCEEEEEEEECCCCCCCCEEEEECCHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCCCCCE
Q ss_conf 59944645423663035448993799980299999980398999931899908876777602899999987544977719
Q 001817 370 RGEKLGESVGYKVRLEGMKGRDTRLMFCTTGILLRRLLVDRSLRGVTHVIVDEIHERGMNEDFLLIVLKELLPRRPELRL 449 (1009)
Q Consensus 370 ~g~~~g~~vGy~ir~e~~~~~~t~Iiv~T~g~Ll~~L~~~~~l~~is~IIIDEvHeR~~~~d~ll~llk~ll~~~~~lki 449 (1009)
++..++..+|+.. ...+++|+|+|||+|++. ....+.++++|||||+|+++...+..+..+...+.......+
T Consensus 281 ~g~~vg~~vG~~~-----~~~~~~IlV~TPGrLl~~--~~l~l~~l~~lVlDEAH~l~~~~~~~l~~Il~~l~~~~~~ll 353 (666)
T 3o8b_A 281 HGIDPNIRTGVRT-----ITTGAPVTYSTYGKFLAD--GGCSGGAYDIIICDECHSTDSTTILGIGTVLDQAETAGARLV 353 (666)
T ss_dssp HSCCCEEECSSCE-----ECCCCSEEEEEHHHHHHT--TSCCTTSCSEEEETTTTCCSHHHHHHHHHHHHHTTTTTCSEE
T ss_pred HCCCEEEEECCEE-----CCCCCCEEEECCHHHHHC--CCCCCCCCCEEEECCCHHCCCCHHHHHHHHHHHHHHCCCCEE
T ss_conf 5997258988576-----158989999890788748--874547515899826232484679999999986241277269
Q ss_pred EEECCCCCHHHHHHHHCCCCEECCCC-CCCCEEEEEHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 98325787788972309999213698-40140567515488885420576665552013457888999999986455479
Q 001817 450 ILMSATLNAELFSSYFGGAPMLHIPG-FTYPVRAYFLENILEMTRYRLNTYNQIDDYGQEKSWKMQKQALALRKRKSSIA 528 (1009)
Q Consensus 450 IlmSATl~~~~l~~yf~~~pvi~i~g-r~~pv~~~yl~~i~~~~~~~~~~~~~i~~~~~e~~~~~~~~~~~~~~~~~~~~ 528 (1009)
++||||++.. + ..+. ...++...+... +..+
T Consensus 354 il~SAT~~~~-----i------~~~~p~i~~v~~~~~~~--------------i~~~----------------------- 385 (666)
T 3o8b_A 354 VLATATPPGS-----V------TVPHPNIEEVALSNTGE--------------IPFY----------------------- 385 (666)
T ss_dssp EEEESSCTTC-----C------CCCCTTEEEEECBSCSS--------------EEET-----------------------
T ss_pred EEECCCCCCC-----C------CCCCCCEEEEEECCCCH--------------HHHH-----------------------
T ss_conf 9987889844-----4------56776147775023204--------------6788-----------------------
Q ss_pred HHHHHHHHHHHHCCHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 99999999721100113322002468999866223999999998615999699991887589999999982999999997
Q 001817 529 SAVEDALEAADFREYSVQTQQSLSCWNPDSIGFNLIEHVLCHIVKKERPGAVLVFMTGWDDINSLKDQLQAHPLLGDPSR 608 (1009)
Q Consensus 529 ~~v~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~li~~ll~~i~~~~~~g~iLVFl~~~~~i~~l~~~L~~~~~~~~~~~ 608 (1009)
..... +.....+++|||++++++++.+++.|... +
T Consensus 386 ---------------------------~~~~~-----------l~~~~~~~vLVFv~Tr~~ae~la~~L~~~-------g 420 (666)
T 3o8b_A 386 ---------------------------GKAIP-----------IEAIRGGRHLIFCHSKKKCDELAAKLSGL-------G 420 (666)
T ss_dssp ---------------------------TEEEC-----------GGGSSSSEEEEECSCHHHHHHHHHHHHTT-------T
T ss_pred ---------------------------HHHHH-----------HHHCCCCCEEEEECCHHHHHHHHHHHHHC-------C
T ss_conf ---------------------------76434-----------55406995899968889999999999867-------9
Q ss_pred EEEEEECCCCCHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCCEEEEEECCCCCCCC----CCCCCCCCCCCCCCCCHH
Q ss_conf 2999804999988898631999999618999647200156889755999479886411----357899786664123797
Q 001817 609 VLLLACHGSMASSEQRLIFDKPEDGVRKIVLATNMAETSITINDVVFVIDCGKAKETS----YDALNNTPCLLPSWISKA 684 (1009)
Q Consensus 609 ~~v~~lHs~l~~~er~~v~~~f~~G~~kVIvATniae~GIdIp~V~~VId~g~~k~~~----yd~~~~~~~l~~~~iS~a 684 (1009)
+.+..+||++++++ |+++..+|||||+++|+||||| |++|||+|+.+... ||+..++.. ...|+|.+
T Consensus 421 ~~v~~lHG~l~q~e-------r~~~~~~VLVATdVaerGIDId-V~~VI~~Gl~~~~ViNyDydP~~gl~~-~~~P~s~~ 491 (666)
T 3o8b_A 421 INAVAYYRGLDVSV-------IPTIGDVVVVATDALMTGYTGD-FDSVIDCNTCVTQTVDFSLDPTFTIET-TTVPQDAV 491 (666)
T ss_dssp CCEEEECTTSCGGG-------SCSSSCEEEEECTTHHHHCCCC-BSEEEECCEEEEEEEECCCSSSCEEEE-EEEECBHH
T ss_pred CCEEEECCCCCHHH-------HHHCCCCEEEECCHHHCCCCCC-CCEEEECCCCCCCCCCCCCCCCCCCCC-CCCCCCHH
T ss_conf 93898608788999-------9728984999897477267789-758996676432211235553223223-55769999
Q ss_pred HHHHHHCCCCCCCCCCEEEECCHHHH
Q ss_conf 69955000399899907992252126
Q 001817 685 AARQRRGRAGRVQPGECYHLYPRYVY 710 (1009)
Q Consensus 685 ~~~QR~GRAGR~~~G~cy~L~t~~~~ 710 (1009)
+|.||+|||||.++|. |.||+..+.
T Consensus 492 syiQRiGRtGRg~~G~-i~lvt~~e~ 516 (666)
T 3o8b_A 492 SRSQRRGRTGRGRRGI-YRFVTPGER 516 (666)
T ss_dssp HHHHHHTTBCSSSCEE-EEESCCCCB
T ss_pred HHHHHHCCCCCCCCCE-EEEEECCHH
T ss_conf 9999863578899988-999823131
Done!