Query 001818
Match_columns 1009
No_of_seqs 43 out of 45
Neff 3.6
Searched_HMMs 46136
Date Fri Mar 29 10:02:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001818.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001818hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05099 TerB: Tellurite resis 95.2 0.05 1.1E-06 52.2 6.8 113 772-900 24-137 (140)
2 cd07311 terB_like_1 tellurium 93.1 1.3 2.7E-05 45.2 11.8 109 776-907 28-136 (150)
3 cd07313 terB_like_2 tellurium 93.0 1.4 3.1E-05 40.6 11.2 97 779-891 7-104 (104)
4 cd07316 terB_like_DjlA N-termi 88.3 1.7 3.7E-05 39.9 7.1 99 778-892 6-106 (106)
5 PF03735 ENT: ENT domain; Int 87.0 7.9 0.00017 35.6 10.2 66 768-833 6-71 (73)
6 PF08429 PLU-1: PLU-1-like pro 86.8 57 0.0012 36.4 19.9 189 756-947 98-300 (335)
7 cd07316 terB_like_DjlA N-termi 86.6 8.9 0.00019 35.3 10.7 95 429-542 11-106 (106)
8 PF05099 TerB: Tellurite resis 86.0 3 6.5E-05 40.2 7.6 115 417-551 23-138 (140)
9 cd07311 terB_like_1 tellurium 85.6 12 0.00025 38.4 11.8 97 707-816 17-133 (150)
10 cd07176 terB tellurite resista 85.3 7.7 0.00017 35.6 9.6 106 774-893 5-111 (111)
11 PF04391 DUF533: Protein of un 82.5 11 0.00023 40.2 10.4 110 416-555 78-187 (188)
12 PRK09430 djlA Dna-J like membr 82.4 12 0.00025 41.5 11.1 77 743-819 74-177 (267)
13 cd07176 terB tellurite resista 82.3 15 0.00033 33.7 10.2 98 428-543 13-111 (111)
14 cd07313 terB_like_2 tellurium 81.4 17 0.00037 33.6 10.2 92 430-541 12-104 (104)
15 PRK09430 djlA Dna-J like membr 79.1 85 0.0018 34.9 16.3 109 430-556 68-176 (267)
16 cd07177 terB_like tellurium re 76.8 55 0.0012 29.3 11.9 99 777-891 5-104 (104)
17 PF07216 LcrG: LcrG protein; 66.1 12 0.00026 36.0 5.2 45 777-824 12-56 (93)
18 TIGR02573 LcrG_PcrG type III s 64.4 16 0.00034 35.0 5.5 50 777-829 9-58 (90)
19 cd07177 terB_like tellurium re 60.1 83 0.0018 28.1 9.3 94 428-541 10-104 (104)
20 TIGR02675 tape_meas_nterm tape 59.2 29 0.00062 31.7 6.1 74 749-839 1-74 (75)
21 PHA00666 putative protease 55.9 28 0.00061 38.3 6.4 44 784-829 92-136 (233)
22 PF03735 ENT: ENT domain; Int 53.9 98 0.0021 28.7 8.6 50 506-555 6-55 (73)
23 PRK11280 hypothetical protein; 51.4 14 0.00031 39.0 3.3 33 97-129 72-106 (170)
24 COG2979 Uncharacterized protei 50.7 1.2E+02 0.0027 33.4 10.0 111 417-557 110-220 (225)
25 PF10025 DUF2267: Uncharacteri 48.3 1.1E+02 0.0024 30.0 8.7 91 793-903 3-95 (125)
26 PF13488 Gly-zipper_Omp: Glyci 47.5 24 0.00052 29.9 3.5 38 97-135 7-44 (46)
27 COG4103 Uncharacterized protei 47.0 2E+02 0.0044 30.1 10.5 111 770-898 29-140 (148)
28 smart00501 BRIGHT BRIGHT, ARID 46.6 12 0.00025 34.8 1.6 50 144-193 36-86 (93)
29 KOG2534 DNA polymerase IV (fam 45.7 65 0.0014 37.4 7.5 99 343-472 10-118 (353)
30 PRK10510 putative outer membra 45.6 15 0.00033 39.5 2.5 40 99-140 49-88 (219)
31 COG3793 TerB Tellurite resista 44.8 48 0.001 34.3 5.8 78 707-809 62-141 (144)
32 PF05818 TraT: Enterobacterial 42.5 22 0.00047 38.8 3.1 28 98-126 95-122 (215)
33 COG1405 SUA7 Transcription ini 41.4 5E+02 0.011 29.6 13.5 105 792-906 100-219 (285)
34 TIGR02675 tape_meas_nterm tape 40.2 95 0.0021 28.4 6.4 71 798-879 3-73 (75)
35 PF03280 Lipase_chap: Proteoba 38.8 3E+02 0.0066 29.2 10.8 94 771-868 57-158 (195)
36 PRK11235 bifunctional antitoxi 38.8 61 0.0013 30.5 5.0 52 490-548 15-73 (80)
37 PF05818 TraT: Enterobacterial 37.6 20 0.00042 39.2 1.9 45 95-140 88-132 (215)
38 PF04391 DUF533: Protein of un 37.0 2.1E+02 0.0045 30.8 9.2 72 743-817 98-187 (188)
39 PRK04019 rplP0 acidic ribosoma 36.4 1.3E+02 0.0028 34.5 8.1 42 475-529 157-199 (330)
40 TIGR01446 DnaD_dom DnaD and ph 36.3 2.2E+02 0.0049 24.9 8.0 53 779-844 5-57 (73)
41 COG5126 FRQ1 Ca2+-binding prot 36.2 1.3E+02 0.0028 31.6 7.4 135 704-887 11-154 (160)
42 PF01388 ARID: ARID/BRIGHT DNA 35.5 13 0.00027 34.1 0.0 49 144-192 40-89 (92)
43 PRK13731 conjugal transfer sur 34.6 23 0.0005 39.3 1.8 7 20-26 43-49 (243)
44 KOG0034 Ca2+/calmodulin-depend 34.4 4E+02 0.0087 28.6 10.8 131 746-888 11-177 (187)
45 cd07178 terB_like_YebE telluri 34.0 4.2E+02 0.0091 25.2 9.8 94 420-543 2-95 (95)
46 PF13436 Gly-zipper_OmpA: Glyc 33.7 47 0.001 32.8 3.6 21 99-119 62-82 (118)
47 COG3413 Predicted DNA binding 33.7 77 0.0017 33.5 5.5 51 562-614 162-212 (215)
48 KOG4675 Uncharacterized conser 32.2 3.2E+02 0.007 31.2 10.0 77 768-844 13-90 (273)
49 cd07178 terB_like_YebE telluri 31.9 3E+02 0.0065 26.2 8.5 92 776-893 4-95 (95)
50 PF10785 NADH-u_ox-rdase: NADH 31.1 90 0.002 29.5 4.9 63 73-136 13-78 (86)
51 PRK13731 conjugal transfer sur 30.4 46 0.001 37.0 3.3 8 68-75 63-70 (243)
52 KOG3324 Mitochondrial import i 29.3 45 0.00098 36.2 2.9 37 96-132 158-196 (206)
53 cd00076 H4 Histone H4, one of 28.7 89 0.0019 29.7 4.4 46 144-195 6-51 (85)
54 PF12949 HeH: HeH/LEM domain; 28.5 50 0.0011 26.8 2.3 34 155-188 1-34 (35)
55 PLN03094 Substrate binding sub 27.6 94 0.002 36.5 5.3 35 3-44 4-38 (370)
56 PF14620 YPEB: YpeB sporulatio 27.5 1E+03 0.022 27.9 13.5 136 755-909 80-223 (361)
57 PRK01294 lipase chaperone; Pro 26.9 97 0.0021 35.7 5.2 57 134-192 80-136 (336)
58 PRK00143 mnmA tRNA-specific 2- 26.8 31 0.00067 39.4 1.3 41 157-197 165-209 (346)
59 PRK13676 hypothetical protein; 25.6 6.2E+02 0.013 24.5 10.2 88 743-833 19-107 (114)
60 KOG3811 Transcription factor A 25.5 1.8E+02 0.0038 34.9 6.9 80 289-377 250-349 (434)
61 TIGR00470 sepS O-phosphoseryl- 24.5 1.6E+02 0.0034 36.2 6.3 94 835-936 107-200 (533)
62 TIGR02698 CopY_TcrY copper tra 22.7 86 0.0019 31.2 3.3 99 743-845 4-112 (130)
63 COG3133 SlyB Outer membrane li 22.6 61 0.0013 33.7 2.3 42 94-136 66-109 (154)
64 PRK06253 O-phosphoseryl-tRNA s 22.6 1.4E+02 0.0031 36.7 5.6 65 835-907 107-172 (529)
65 PRK01294 lipase chaperone; Pro 22.5 1.3E+03 0.027 27.0 14.0 94 771-868 183-284 (336)
66 PF01031 Dynamin_M: Dynamin ce 22.0 1.1E+03 0.024 26.1 12.9 172 746-943 93-272 (295)
67 cd03021 DsbA_GSTK DsbA family, 21.8 3.7E+02 0.008 28.1 7.9 64 769-833 109-176 (209)
68 KOG3816 Cell differentiation r 21.5 25 0.00053 41.4 -0.8 12 204-215 117-128 (526)
69 COG5114 Histone acetyltransfer 21.4 1.3E+02 0.0027 35.1 4.6 44 490-536 366-409 (432)
70 PF13436 Gly-zipper_OmpA: Glyc 21.3 1.7E+02 0.0037 29.0 5.0 33 97-130 64-96 (118)
71 PTZ00015 histone H4; Provision 21.1 1.3E+02 0.0028 29.7 4.0 44 152-195 25-68 (102)
72 PF09548 Spore_III_AB: Stage I 21.1 3.2E+02 0.0069 28.3 7.2 58 510-567 86-143 (170)
73 PF11272 DUF3072: Protein of u 21.0 2.2E+02 0.0048 25.7 5.0 37 784-820 12-54 (57)
74 PF05527 DUF758: Domain of unk 20.8 2.2E+02 0.0047 30.8 6.0 98 769-881 8-112 (186)
75 TIGR01448 recD_rel helicase, p 20.7 1.8E+03 0.039 28.2 17.7 139 701-863 33-180 (720)
76 PF11264 ThylakoidFormat: Thyl 20.7 1.8E+02 0.0039 32.0 5.5 132 395-527 46-200 (216)
77 COG2511 GatE Archaeal Glu-tRNA 20.7 1.4E+03 0.03 28.9 13.0 111 797-913 461-589 (631)
78 PLN00035 histone H4; Provision 20.6 1.5E+02 0.0032 29.3 4.4 46 144-195 22-67 (103)
79 PF12833 HTH_18: Helix-turn-he 20.4 3.5E+02 0.0076 23.7 6.4 45 799-843 1-54 (81)
80 smart00526 H15 Domain in histo 20.3 2.8E+02 0.0062 24.2 5.7 60 465-528 4-63 (66)
No 1
>PF05099 TerB: Tellurite resistance protein TerB; InterPro: IPR007791 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Direct interaction between DnaK and djlA is needed for the induction of the wcaABCDE operon which is involved in the synthesis of a colanic acid polysaccharide capsule. The colanic acid capsule may help the bacterium survive conditions outside the host [, ]; PDB: 2H5N_D 2JXU_A.
Probab=95.25 E-value=0.05 Score=52.21 Aligned_cols=113 Identities=23% Similarity=0.383 Sum_probs=80.7
Q ss_pred HHHHHHHHHHHhhcCCCCHHHHHHHHHHH-HHhCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHcccch
Q 001818 772 EQAFRQQAEVILADGQLTKARIEQLNEVQ-KQVGLPSEYAQKIIKNITTTKMAAAIETAVAQGKLNIKQIRELKEASVDL 850 (1009)
Q Consensus 772 eqAyrqqaeqiL~dG~Lt~akae~L~eiq-~qLgLp~e~AqKiIk~it~~Kms~~ie~~va~GkL~~~~V~eLke~gV~L 850 (1009)
..+++=.+..+.+||.++++..+.+.++. .+.+++++..+.++..+...+-. ..+..+. --.|
T Consensus 24 ~a~~~ll~~~a~aDG~v~~~E~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~----------~~~~~~~------~~~l 87 (140)
T PF05099_consen 24 EALLALLAAVAKADGEVDPEEIEAIRQLLAERFGLSPEEAEELIELADELKQE----------PIDLEEL------LREL 87 (140)
T ss_dssp HHHHHHHHHHHHTTSS--CHHHHHHHHHHHHCGCGSCHHHHHHHHHHCHHHHH----------CCHHHHH------HHHH
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHhc----------cccHHHH------HHHH
Confidence 34455567788899999999999998877 99999999999887765443332 2222222 2235
Q ss_pred hhhccHHHHHHHHHHHHHHHHhcCCCCCchHHHHHhcccccCCCHHHHHH
Q 001818 851 DNMISESLRENLFKKTVDEIFSSGTGEFDAEEVYEKIPADLSINAEKARR 900 (1009)
Q Consensus 851 ~~~ised~R~~LFrK~V~e~issGtg~fD~ee~~~kip~dL~I~~ekAk~ 900 (1009)
.+.++.+.|..+++..+.=+.++|...-.+.+++.++...|+|+.+.-+.
T Consensus 88 ~~~~~~~~r~~ll~~l~~ia~ADG~~~~~E~~~l~~ia~~L~i~~~~~~~ 137 (140)
T PF05099_consen 88 RDSLSPEEREDLLRMLIAIAYADGEISPEEQEFLRRIAEALGISEEDFQR 137 (140)
T ss_dssp CTS--HHHHHHHHHHHHHHCTCTTC-SCCHHHHHHHHHHHCTS-SS----
T ss_pred HHhhchHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCCHHHHhc
Confidence 55566999999999999999999999999999999999999999876554
No 2
>cd07311 terB_like_1 tellurium resistance terB-like protein, subgroup 1. This family includes several uncharacterized bacterial proteins. The prototype of this CD is tellurite resistance protein from Nostoc punctiforme that belongs to COG3793. Its precise biological function and its mechanism responsible for tellurium resistance still remains rather poorly understood.
Probab=93.09 E-value=1.3 Score=45.24 Aligned_cols=109 Identities=12% Similarity=0.105 Sum_probs=78.0
Q ss_pred HHHHHHHhhcCCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHcccchhhhcc
Q 001818 776 RQQAEVILADGQLTKARIEQLNEVQKQVGLPSEYAQKIIKNITTTKMAAAIETAVAQGKLNIKQIRELKEASVDLDNMIS 855 (1009)
Q Consensus 776 rqqaeqiL~dG~Lt~akae~L~eiq~qLgLp~e~AqKiIk~it~~Kms~~ie~~va~GkL~~~~V~eLke~gV~L~~~is 855 (1009)
+..+..+-+||+.++++++....+..++||+++....+++. . ..+.+..-...-. + +.
T Consensus 28 ~~Ll~iAkADG~Vse~Ei~~~~~~m~~~~L~~e~~~~aie~---------------~---~~~~L~~~~~~~~-~---~~ 85 (150)
T cd07311 28 KALLVCAKGDGVISPEERDWAIGYAAARGGDADMVEELKEY---------------T---ADEDLEEVDFRSP-N---IK 85 (150)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHh---------------C---ccccHHHHHHHHH-h---cc
Confidence 34556678999999999999999999999999997777766 1 1111111110000 0 44
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCchHHHHHhcccccCCCHHHHHHHHHHHHH
Q 001818 856 ESLRENLFKKTVDEIFSSGTGEFDAEEVYEKIPADLSINAEKARRVVHELAR 907 (1009)
Q Consensus 856 ed~R~~LFrK~V~e~issGtg~fD~ee~~~kip~dL~I~~ekAk~Iv~~~a~ 907 (1009)
.+.|.-|.. .+.=++.+|.-+--+++++.++..-|+|+...-..+.+.-++
T Consensus 86 ~~~~~ll~~-~l~vA~ADG~l~~~E~~lL~~iA~~LGis~~~~~~l~~~~~~ 136 (150)
T cd07311 86 SSRRALLYD-AIQVCAADGELSPGEVAAVRKAASLLGISEDEVQKLEEIYFQ 136 (150)
T ss_pred hhHHHHHHH-HHHHHHcCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 455555544 778899999887778899999999999999887777666333
No 3
>cd07313 terB_like_2 tellurium resistance terB-like protein, subgroup 2. This family includes several uncharacterized bacterial proteins. Protein sequence homology analysis shows they are similar to tellurium resistance protein terB, but the function of this family is unknown.
Probab=93.01 E-value=1.4 Score=40.57 Aligned_cols=97 Identities=15% Similarity=0.241 Sum_probs=73.9
Q ss_pred HHHHhhcCCCCHHHHHHHHHHHHH-hCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHcccchhhhccHH
Q 001818 779 AEVILADGQLTKARIEQLNEVQKQ-VGLPSEYAQKIIKNITTTKMAAAIETAVAQGKLNIKQIRELKEASVDLDNMISES 857 (1009)
Q Consensus 779 aeqiL~dG~Lt~akae~L~eiq~q-LgLp~e~AqKiIk~it~~Kms~~ie~~va~GkL~~~~V~eLke~gV~L~~~ised 857 (1009)
...+.+||+.+.+.++.+..+-.+ +|++++....+++.....+- ...+..+.... +....+.+
T Consensus 7 ~~vA~aDG~v~~~E~~~i~~~l~~~~~l~~~~~~~l~~~~~~~~~----------~~~~~~~~~~~------~~~~~~~~ 70 (104)
T cd07313 7 VEVARADGEYDEEERAAIDRLLAERFGLDAEEAAELLAEAEALEE----------EAPDLYEFTSL------IKEHFDYE 70 (104)
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHH----------hCCCHHHHHHH------HHHhCCHH
Confidence 567889999999999999999777 79999999998875544332 12344443332 32334889
Q ss_pred HHHHHHHHHHHHHHhcCCCCCchHHHHHhccccc
Q 001818 858 LRENLFKKTVDEIFSSGTGEFDAEEVYEKIPADL 891 (1009)
Q Consensus 858 ~R~~LFrK~V~e~issGtg~fD~ee~~~kip~dL 891 (1009)
+|..+-+-.+.=++++|..+-.++++++++..-|
T Consensus 71 ~r~~~l~~L~~vA~ADG~~~~~E~~~l~~ia~~L 104 (104)
T cd07313 71 ERLELVEALWEVAYADGELDEYEEHLIRRVADLL 104 (104)
T ss_pred HHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhC
Confidence 9999999999999999999888889998886543
No 4
>cd07316 terB_like_DjlA N-terminal tellurium resistance protein terB-like domain of heat shock DnaJ-like proteins. Tellurium resistance terB-like domain of the DnaJ-like DjlA proteins. This family represents the terB-like domain of DjlA-like proteins, a subgroup of heat shock DnaJ-like proteins. Escherichia coli DjlA is a type III membrane protein with a small N-terminal transmembrane region and DnaJ-like domain on the extreme C-terminus. Overproduction has been shown to activate the RcsC pathway, which regulates the production of the capsular exopolysaccharide colanic acid. The specific function of this domain is unknown.
Probab=88.29 E-value=1.7 Score=39.93 Aligned_cols=99 Identities=17% Similarity=0.241 Sum_probs=72.7
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHcccchhhh--cc
Q 001818 778 QAEVILADGQLTKARIEQLNEVQKQVGLPSEYAQKIIKNITTTKMAAAIETAVAQGKLNIKQIRELKEASVDLDNM--IS 855 (1009)
Q Consensus 778 qaeqiL~dG~Lt~akae~L~eiq~qLgLp~e~AqKiIk~it~~Kms~~ie~~va~GkL~~~~V~eLke~gV~L~~~--is 855 (1009)
.+..+.+||..|++.++++..+-+++.+++....++++-+...+- .+ .+..++... +... .+
T Consensus 6 l~~vA~aDG~v~~~E~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~---------~~-~~~~~~~~~------l~~~~~~~ 69 (106)
T cd07316 6 MGKLAKADGRVSEAEIQAARALMDQMGLDAEARREAIRLFNEGKE---------SD-FGLEEYARQ------FRRACGGR 69 (106)
T ss_pred HhHHHhccCCcCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc---------CC-CCHHHHHHH------HHHHHCCC
Confidence 467788999999999999999999999886666666554443221 11 223332221 2222 57
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCchHHHHHhcccccC
Q 001818 856 ESLRENLFKKTVDEIFSSGTGEFDAEEVYEKIPADLS 892 (1009)
Q Consensus 856 ed~R~~LFrK~V~e~issGtg~fD~ee~~~kip~dL~ 892 (1009)
+++|..+++-.+.=+.++|..+=.++++++++..-||
T Consensus 70 ~~~r~~~l~~l~~vA~ADG~~~~~E~~~l~~ia~~Lg 106 (106)
T cd07316 70 PELLLQLLEFLFQIAYADGELSEAERELLRRIARLLG 106 (106)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcC
Confidence 8999999999999999999998778899999877664
No 5
>PF03735 ENT: ENT domain; InterPro: IPR005491 This entry represents a protein regulator which is able to repress transcription, possibly via its interaction with a multi protein chromatin re-modeling complex that modifies the chromatin. Its interaction with BRCA2 suggests that it may play a central role in the DNA repair function of BRCA2 []. ; PDB: 1UZ3_B 1UTU_B 2FMM_E.
Probab=86.98 E-value=7.9 Score=35.64 Aligned_cols=66 Identities=17% Similarity=0.254 Sum_probs=51.8
Q ss_pred HhHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 001818 768 RGLAEQAFRQQAEVILADGQLTKARIEQLNEVQKQVGLPSEYAQKIIKNITTTKMAAAIETAVAQG 833 (1009)
Q Consensus 768 ~~laeqAyrqqaeqiL~dG~Lt~akae~L~eiq~qLgLp~e~AqKiIk~it~~Kms~~ie~~va~G 833 (1009)
..|=-.||..-+...-+.|.|+.+|-..|.+|++.|+.+.+.-..+++.+........|......|
T Consensus 6 ~~LE~eAY~svl~Af~Aqg~lsweke~lLt~Lr~~L~IS~e~H~~~l~~~~~De~l~~ir~~~~~~ 71 (73)
T PF03735_consen 6 HRLELEAYSSVLRAFRAQGPLSWEKEKLLTELRKELNISDEEHREELRRAVSDEQLKTIREWRQGG 71 (73)
T ss_dssp HHHHHHHHHHHHHHHHHHSS--HHHHHHHHHHHHHTT--HHHHHHHHHHHHH-HHHHHHHHHHH-S
T ss_pred HHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHhccHHHHHHHHHhhcC
Confidence 346678999999999999999999999999999999999999999999999887766555544433
No 6
>PF08429 PLU-1: PLU-1-like protein; InterPro: IPR013637 This domain is found in the central region of lysine-specific demethylases, which are nuclear proteins that may have a role in DNA-binding and transcription, and are associated with malignant cancer phenotypes []. The domain is also found in various other Jumonji/ARID domain-containing proteins (see IPR013129 from INTERPRO, IPR001606 from INTERPRO). ; GO: 0016706 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, 0055114 oxidation-reduction process
Probab=86.81 E-value=57 Score=36.37 Aligned_cols=189 Identities=16% Similarity=0.264 Sum_probs=124.9
Q ss_pred cCCChHHHHHHHHhHH-HHHHHHHHHHHhhc-CCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 001818 756 LGLTTKEIVDVHRGLA-EQAFRQQAEVILAD-GQLTKARIEQLNEVQKQVGLPSEYAQKIIKNITTTKMAAAIETAVAQG 833 (1009)
Q Consensus 756 LGL~~kEi~~VH~~la-eqAyrqqaeqiL~d-G~Lt~akae~L~eiq~qLgLp~e~AqKiIk~it~~Kms~~ie~~va~G 833 (1009)
|+..-.||..+..-+- -..|+..+..+|.+ -..+-...+.|=+.-+.+|++-.....+.+-+.+.+-..........+
T Consensus 98 L~~~~pEi~~L~~l~~~ve~f~~~a~~~L~~~~~~~~~~le~Ll~~g~s~~v~lpel~~L~~~l~~~~W~~~~~~~~~~~ 177 (335)
T PF08429_consen 98 LPFDCPEIDQLKELLEEVEEFQSRAQEALSDPESPSLEELEELLEEGESFGVDLPELDQLRRRLEQLEWLEEAREILSDP 177 (335)
T ss_pred CCeeCchHHHHHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHhcccCceeChhHHHHHHHHHHHHHHHHHHHHhccc
Confidence 3334445444432221 25699999999998 337777999999999999999999999999999988888778788877
Q ss_pred -CCCHHHHHHHHHcccchhh-----h----ccHHHHHHHHHHHHHHHHhcCCCCCc-hHHHHHhcccccCCCHHHHHHHH
Q 001818 834 -KLNIKQIRELKEASVDLDN-----M----ISESLRENLFKKTVDEIFSSGTGEFD-AEEVYEKIPADLSINAEKARRVV 902 (1009)
Q Consensus 834 -kL~~~~V~eLke~gV~L~~-----~----ised~R~~LFrK~V~e~issGtg~fD-~ee~~~kip~dL~I~~ekAk~Iv 902 (1009)
++|.+++++|.+.|..+.. + -..-..+.-+...+.+.|+.....++ .+.++... ..+.+..+....+-
T Consensus 178 ~~~tL~~l~~Ll~~g~~l~~~~~~~~~~~L~~~l~~~~~We~ka~~~L~~~~~~l~~Le~l~~~~-~~ipv~~~~~~~L~ 256 (335)
T PF08429_consen 178 DRLTLDELRELLDEGERLGIPSDEKLMAELQELLKQGEEWEEKAKELLSRPRVSLEQLEALLEEA-ENIPVSLPSLDKLK 256 (335)
T ss_pred cCCcHHHHHHHHHhhhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH-hcCCCchHHHHHHH
Confidence 4999999999999999832 1 11223345577888888884444333 23555554 45556665544433
Q ss_pred HHHHHHHHHHHHHHHHHHHhh-hchhhHHHHHHHHhhcCccccCCC
Q 001818 903 HELARNRLSNSLIQAVSLLRQ-KNRQGVVSSLNDLLACDKAVPAEP 947 (1009)
Q Consensus 903 ~~~a~~R~~n~LvQAVa~LRQ-r~~~evv~sL~nLLac~~lvps~~ 947 (1009)
.-+.+. +....|+..++.| ...--.+.+|++|++...-+|..+
T Consensus 257 ~~l~ka--k~w~~~i~~ll~~~~~~~p~~~el~~l~~~~~~L~~~~ 300 (335)
T PF08429_consen 257 DALQKA--KEWLRQIEELLEQNGSKRPTLDELEELVAESEELPVKL 300 (335)
T ss_pred HHHHHH--HHHHHHHHHHhcccCCCCCcHHHHHHHHHHHhcCCCCC
Confidence 222222 2255555565544 444445777777777766666533
No 7
>cd07316 terB_like_DjlA N-terminal tellurium resistance protein terB-like domain of heat shock DnaJ-like proteins. Tellurium resistance terB-like domain of the DnaJ-like DjlA proteins. This family represents the terB-like domain of DjlA-like proteins, a subgroup of heat shock DnaJ-like proteins. Escherichia coli DjlA is a type III membrane protein with a small N-terminal transmembrane region and DnaJ-like domain on the extreme C-terminus. Overproduction has been shown to activate the RcsC pathway, which regulates the production of the capsular exopolysaccharide colanic acid. The specific function of this domain is unknown.
Probab=86.58 E-value=8.9 Score=35.27 Aligned_cols=95 Identities=20% Similarity=0.322 Sum_probs=67.4
Q ss_pred CCCCCccchHHHHHHHHHHHhCCCcchhhHHHHHHhhHHHHHHHHhhhcCCcccccCChhHHHHhhhhhccCChhhHHHH
Q 001818 429 LSGGRMEESKLAALNQLRNIFGLGKRESEAIIVDVTSKVYRKRLGQAVSGGALEAADSKASFLQSLCEELHFDPQKASEI 508 (1009)
Q Consensus 429 Ls~G~l~~~~~~~L~~LknifGLg~~EAe~I~~dV~~kiYR~rL~~~v~sg~le~a~SkA~~LQ~lc~~L~Fdpe~A~~i 508 (1009)
..+|++++.+...+..+=.-+++...+... ....+++.. +...+...+.+.+++.++.+|+....+
T Consensus 11 ~aDG~v~~~E~~~i~~~l~~~~~~~~~~~~-----~~~~~~~~~---------~~~~~~~~~~~~l~~~~~~~~~~r~~~ 76 (106)
T cd07316 11 KADGRVSEAEIQAARALMDQMGLDAEARRE-----AIRLFNEGK---------ESDFGLEEYARQFRRACGGRPELLLQL 76 (106)
T ss_pred hccCCcCHHHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHhC---------cCCCCHHHHHHHHHHHHCCCHHHHHHH
Confidence 379999999999999987777764222111 123333322 222566779999999999999976666
Q ss_pred HHHHHHHHHHHHh-hcCCCChHhHHHHHhhHHhhc
Q 001818 509 HEEIYRQKLQQCV-ADGELNDEDVAALLRLRVMLC 542 (1009)
Q Consensus 509 heeIYr~kL~q~V-sd~~ltdedv~aLlr~R~~Lc 542 (1009)
-+.++ .+. +||.++..+...|.++...|+
T Consensus 77 l~~l~-----~vA~ADG~~~~~E~~~l~~ia~~Lg 106 (106)
T cd07316 77 LEFLF-----QIAYADGELSEAERELLRRIARLLG 106 (106)
T ss_pred HHHHH-----HHHHHcCCCCHHHHHHHHHHHHHcC
Confidence 55555 333 599999999999999988775
No 8
>PF05099 TerB: Tellurite resistance protein TerB; InterPro: IPR007791 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Direct interaction between DnaK and djlA is needed for the induction of the wcaABCDE operon which is involved in the synthesis of a colanic acid polysaccharide capsule. The colanic acid capsule may help the bacterium survive conditions outside the host [, ]; PDB: 2H5N_D 2JXU_A.
Probab=86.04 E-value=3 Score=40.15 Aligned_cols=115 Identities=23% Similarity=0.291 Sum_probs=68.1
Q ss_pred HHHHHHHHHhccCCCCCccchHHHHHHHHH-HHhCCCcchhhHHHHHHhhHHHHHHHHhhhcCCcccccCChhHHHHhhh
Q 001818 417 LKLLYRAYVTDSLSGGRMEESKLAALNQLR-NIFGLGKRESEAIIVDVTSKVYRKRLGQAVSGGALEAADSKASFLQSLC 495 (1009)
Q Consensus 417 LK~LYraYL~e~Ls~G~l~~~~~~~L~~Lk-nifGLg~~EAe~I~~dV~~kiYR~rL~~~v~sg~le~a~SkA~~LQ~lc 495 (1009)
..-+++.-+.=+..+|.++.++...|.++= +.+|+.+.+...++-..... ..+ . . -++++|
T Consensus 23 ~~a~~~ll~~~a~aDG~v~~~E~~~i~~~~~~~~~~~~~~~~~l~~~~~~~-~~~-------~------~----~~~~~~ 84 (140)
T PF05099_consen 23 REALLALLAAVAKADGEVDPEEIEAIRQLLAERFGLSPEEAEELIELADEL-KQE-------P------I----DLEELL 84 (140)
T ss_dssp HHHHHHHHHHHHHTTSS--CHHHHHHHHHHHHCGCGSCHHHHHHHHHHCHH-HHH-------C------C----HHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHH-Hhc-------c------c----cHHHHH
Confidence 333444333334499999999999887744 88899988877664332221 111 0 1 123334
Q ss_pred hhccCChhhHHHHHHHHHHHHHHHHhhcCCCChHhHHHHHhhHHhhccchHHHHHH
Q 001818 496 EELHFDPQKASEIHEEIYRQKLQQCVADGELNDEDVAALLRLRVMLCVPQQTVEAA 551 (1009)
Q Consensus 496 ~~L~Fdpe~A~~iheeIYr~kL~q~Vsd~~ltdedv~aLlr~R~~LcIp~~~V~~a 551 (1009)
..++= ....+..+.+++.-..=+.+||.+++++...|-++...|+||.+.++.+
T Consensus 85 ~~l~~--~~~~~~r~~ll~~l~~ia~ADG~~~~~E~~~l~~ia~~L~i~~~~~~~~ 138 (140)
T PF05099_consen 85 RELRD--SLSPEEREDLLRMLIAIAYADGEISPEEQEFLRRIAEALGISEEDFQRI 138 (140)
T ss_dssp HHHCT--S--HHHHHHHHHHHHHHCTCTTC-SCCHHHHHHHHHHHCTS-SS-----
T ss_pred HHHHH--hhchHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCCHHHHhcc
Confidence 33321 1125556667766666666799999999999999999999999887654
No 9
>cd07311 terB_like_1 tellurium resistance terB-like protein, subgroup 1. This family includes several uncharacterized bacterial proteins. The prototype of this CD is tellurite resistance protein from Nostoc punctiforme that belongs to COG3793. Its precise biological function and its mechanism responsible for tellurium resistance still remains rather poorly understood.
Probab=85.59 E-value=12 Score=38.41 Aligned_cols=97 Identities=19% Similarity=0.277 Sum_probs=70.4
Q ss_pred CCcchHHHHHHHHHHHHh--ccceeeccccccccccccchHHHhhhhhhcccCCChHHHHHHHHhHH-----H-------
Q 001818 707 LPERDRTDLYKTYLLYCL--TGEVTKIPFGASITTKKDDSEYVLLSQLGGILGLTTKEIVDVHRGLA-----E------- 772 (1009)
Q Consensus 707 l~~rdr~dLYr~YL~~Cl--sGe~~~~p~G~~i~~~kdqsEf~~LnQLg~ILGL~~kEi~~VH~~la-----e------- 772 (1009)
.|..+-..-|--=|++|. .|+++ ..|...+..+-.=+||+..+..++..... .
T Consensus 17 ~~~~~~~~~~~~~Ll~iAkADG~Vs-------------e~Ei~~~~~~m~~~~L~~e~~~~aie~~~~~~L~~~~~~~~~ 83 (150)
T cd07311 17 IPTNQDKLAYLKALLVCAKGDGVIS-------------PEERDWAIGYAAARGGDADMVEELKEYTADEDLEEVDFRSPN 83 (150)
T ss_pred CCCcccHHHHHHHHHHHHHcCCCCC-------------HHHHHHHHHHHHHcCCCHHHHHHHHHhCccccHHHHHHHHHh
Confidence 443334445555677777 89888 88887777776667888876555433210 0
Q ss_pred ------HHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhCCChHHHHHHHHH
Q 001818 773 ------QAFRQQAEVILADGQLTKARIEQLNEVQKQVGLPSEYAQKIIKN 816 (1009)
Q Consensus 773 ------qAyrqqaeqiL~dG~Lt~akae~L~eiq~qLgLp~e~AqKiIk~ 816 (1009)
+.-.-++..+++||.+++++-+.|..+++-||+|+..-..+++-
T Consensus 84 ~~~~~~~ll~~~l~vA~ADG~l~~~E~~lL~~iA~~LGis~~~~~~l~~~ 133 (150)
T cd07311 84 IKSSRRALLYDAIQVCAADGELSPGEVAAVRKAASLLGISEDEVQKLEEI 133 (150)
T ss_pred cchhHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 11122668899999999999999999999999999999988866
No 10
>cd07176 terB tellurite resistance protein terB. This family contains uncharacterized bacterial proteins involved in tellurium resistance. The prototype of this CD is the Kp-terB protein from Klebsiella pneumoniae, whose 3D structure was recently determined. The biological function of terB and the mechanism responsible for tellurium resistance are unknown.
Probab=85.34 E-value=7.7 Score=35.60 Aligned_cols=106 Identities=18% Similarity=0.226 Sum_probs=75.0
Q ss_pred HHHHHHHHHhhcCCCCHHHHHHHHHHHH-HhCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHcccchhh
Q 001818 774 AFRQQAEVILADGQLTKARIEQLNEVQK-QVGLPSEYAQKIIKNITTTKMAAAIETAVAQGKLNIKQIRELKEASVDLDN 852 (1009)
Q Consensus 774 AyrqqaeqiL~dG~Lt~akae~L~eiq~-qLgLp~e~AqKiIk~it~~Kms~~ie~~va~GkL~~~~V~eLke~gV~L~~ 852 (1009)
++.=-+..+.+||..+.+.++.+.++=. ..+|++....+++.-+..-.-. . ...+..++.. .+..
T Consensus 5 ~~~l~~~va~aDG~v~~~E~~~i~~~l~~~~~l~~~~~~~~~~~~~~~~~~-----~---~~~~~~~~~~------~~~~ 70 (111)
T cd07176 5 LVALAALVAAADGDIDDAELQAIEALLRSLPVLSGFDRERLIALLDKLLAL-----L---RPEGLAALLK------AAAK 70 (111)
T ss_pred HHHHHHHHHHhccCCCHHHHHHHHHHHHcCccccCCCHHHHHHHHHHHHHH-----H---HHhhHHHHHH------HHHH
Confidence 4445577889999999998888877765 7888876666666554443221 0 0111222222 2334
Q ss_pred hccHHHHHHHHHHHHHHHHhcCCCCCchHHHHHhcccccCC
Q 001818 853 MISESLRENLFKKTVDEIFSSGTGEFDAEEVYEKIPADLSI 893 (1009)
Q Consensus 853 ~ised~R~~LFrK~V~e~issGtg~fD~ee~~~kip~dL~I 893 (1009)
..+.++|..+|+-.+.=+.++|..+-.+.++++++...|+|
T Consensus 71 ~~~~~~r~~~~~~~~~ia~aDG~~~~~E~~~L~~l~~~Lgl 111 (111)
T cd07176 71 LLPPELRETAFAVAVDIAAADGEVDPEERAVLEKLYRALGL 111 (111)
T ss_pred hCCHHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhCc
Confidence 45589999999999999999999888888999999998886
No 11
>PF04391 DUF533: Protein of unknown function (DUF533); InterPro: IPR007486 Some family members may be secreted or integral membrane proteins.
Probab=82.49 E-value=11 Score=40.18 Aligned_cols=110 Identities=20% Similarity=0.263 Sum_probs=79.7
Q ss_pred HHHHHHHHHHhccCCCCCccchHHHHHHHHHHHhCCCcchhhHHHHHHhhHHHHHHHHhhhcCCcccccCChhHHHHhhh
Q 001818 416 DLKLLYRAYVTDSLSGGRMEESKLAALNQLRNIFGLGKRESEAIIVDVTSKVYRKRLGQAVSGGALEAADSKASFLQSLC 495 (1009)
Q Consensus 416 DLK~LYraYL~e~Ls~G~l~~~~~~~L~~LknifGLg~~EAe~I~~dV~~kiYR~rL~~~v~sg~le~a~SkA~~LQ~lc 495 (1009)
.-..|.|+-+.-+-.+|.++++|...|..-=.-+|++..+-+=|.-+...| -+++ .|.
T Consensus 78 ~a~lllrAMIaAAkADG~ID~~Er~~I~~~l~~~g~d~e~~~~l~~eL~~P------------------~d~~----~la 135 (188)
T PF04391_consen 78 HARLLLRAMIAAAKADGHIDEEERQRIEGALQELGLDAEERAWLQAELAAP------------------LDPD----ALA 135 (188)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHhCC------------------CCHH----HHH
Confidence 556788999999999999999999999887777799865543333333222 2222 233
Q ss_pred hhccCChhhHHHHHHHHHHHHHHHHhhcCCCChHhHHHHHhhHHhhccchHHHHHHHHhh
Q 001818 496 EELHFDPQKASEIHEEIYRQKLQQCVADGELNDEDVAALLRLRVMLCVPQQTVEAAHSDI 555 (1009)
Q Consensus 496 ~~L~Fdpe~A~~iheeIYr~kL~q~Vsd~~ltdedv~aLlr~R~~LcIp~~~V~~ah~di 555 (1009)
..+ =+|+.|.+ +| +-+++.=..-|..+-++|..+..-|+||.+.|+..|+.+
T Consensus 136 ~~v-~~~e~A~e----vY---~aS~laid~d~~~Er~YL~~LA~aL~L~~~lv~~le~~~ 187 (188)
T PF04391_consen 136 AAV-TDPEQAAE----VY---LASLLAIDVDTFAERAYLDELAQALGLDPDLVAQLEQQA 187 (188)
T ss_pred HhC-CCHHHHHH----HH---HHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHc
Confidence 333 46666665 46 444566446799999999999999999999999999764
No 12
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=82.35 E-value=12 Score=41.45 Aligned_cols=77 Identities=17% Similarity=0.267 Sum_probs=57.5
Q ss_pred chHHHhhhhhhcccCCChHH-----------------HHHHHH----------hHHHHHHHHHHHHHhhcCCCCHHHHHH
Q 001818 743 DSEYVLLSQLGGILGLTTKE-----------------IVDVHR----------GLAEQAFRQQAEVILADGQLTKARIEQ 795 (1009)
Q Consensus 743 qsEf~~LnQLg~ILGL~~kE-----------------i~~VH~----------~laeqAyrqqaeqiL~dG~Lt~akae~ 795 (1009)
+.|.....+|-+-|||+..+ ..++-+ ++.+....-+...+++||.|++.+.+.
T Consensus 74 e~Ei~~~~~l~~~~~l~~~~r~~a~~lf~~~k~~~~~l~~~~~~~~~~~~~r~~l~~~lL~~l~~vA~ADG~l~~~E~~~ 153 (267)
T PRK09430 74 EADIRIASQLMDRMNLHGEARRAAQQAFREGKEPDFPLREKLRQFRSVCGGRFDLLRMFLEIQIQAAFADGSLHPNERQV 153 (267)
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcccCCCHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 77877777777778888776 112222 222223344557889999999999999
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHH
Q 001818 796 LNEVQKQVGLPSEYAQKIIKNITT 819 (1009)
Q Consensus 796 L~eiq~qLgLp~e~AqKiIk~it~ 819 (1009)
|..|++.||+++..-..++.....
T Consensus 154 L~~Ia~~Lgis~~df~~~~~~~~~ 177 (267)
T PRK09430 154 LYVIAEELGFSRFQFDQLLRMMQA 177 (267)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHH
Confidence 999999999999998888877654
No 13
>cd07176 terB tellurite resistance protein terB. This family contains uncharacterized bacterial proteins involved in tellurium resistance. The prototype of this CD is the Kp-terB protein from Klebsiella pneumoniae, whose 3D structure was recently determined. The biological function of terB and the mechanism responsible for tellurium resistance are unknown.
Probab=82.32 E-value=15 Score=33.66 Aligned_cols=98 Identities=23% Similarity=0.354 Sum_probs=59.9
Q ss_pred cCCCCCccchHHHHHHHHHH-HhCCCcchhhHHHHHHhhHHHHHHHHhhhcCCcccccCChhHHHHhhhhhccCChhhHH
Q 001818 428 SLSGGRMEESKLAALNQLRN-IFGLGKRESEAIIVDVTSKVYRKRLGQAVSGGALEAADSKASFLQSLCEELHFDPQKAS 506 (1009)
Q Consensus 428 ~Ls~G~l~~~~~~~L~~Lkn-ifGLg~~EAe~I~~dV~~kiYR~rL~~~v~sg~le~a~SkA~~LQ~lc~~L~Fdpe~A~ 506 (1009)
+..+|+++.++...+.++=+ .++++..+...+.-. |+...... . ..+...+...+-..+. |+
T Consensus 13 a~aDG~v~~~E~~~i~~~l~~~~~l~~~~~~~~~~~-----~~~~~~~~-~------~~~~~~~~~~~~~~~~--~~--- 75 (111)
T cd07176 13 AAADGDIDDAELQAIEALLRSLPVLSGFDRERLIAL-----LDKLLALL-R------PEGLAALLKAAAKLLP--PE--- 75 (111)
T ss_pred HHhccCCCHHHHHHHHHHHHcCccccCCCHHHHHHH-----HHHHHHHH-H------HhhHHHHHHHHHHhCC--HH---
Confidence 44799999999999988876 788886665554322 22222110 0 0111222222222222 33
Q ss_pred HHHHHHHHHHHHHHhhcCCCChHhHHHHHhhHHhhcc
Q 001818 507 EIHEEIYRQKLQQCVADGELNDEDVAALLRLRVMLCV 543 (1009)
Q Consensus 507 ~iheeIYr~kL~q~Vsd~~ltdedv~aLlr~R~~LcI 543 (1009)
-...+|+--.+=..+||.+++.+...|.++...|+|
T Consensus 76 -~r~~~~~~~~~ia~aDG~~~~~E~~~L~~l~~~Lgl 111 (111)
T cd07176 76 -LRETAFAVAVDIAAADGEVDPEERAVLEKLYRALGL 111 (111)
T ss_pred -HHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhCc
Confidence 334445444455557999999999999999999986
No 14
>cd07313 terB_like_2 tellurium resistance terB-like protein, subgroup 2. This family includes several uncharacterized bacterial proteins. Protein sequence homology analysis shows they are similar to tellurium resistance protein terB, but the function of this family is unknown.
Probab=81.36 E-value=17 Score=33.59 Aligned_cols=92 Identities=26% Similarity=0.402 Sum_probs=61.0
Q ss_pred CCCCccchHHHHHHHH-HHHhCCCcchhhHHHHHHhhHHHHHHHHhhhcCCcccccCChhHHHHhhhhhccCChhhHHHH
Q 001818 430 SGGRMEESKLAALNQL-RNIFGLGKRESEAIIVDVTSKVYRKRLGQAVSGGALEAADSKASFLQSLCEELHFDPQKASEI 508 (1009)
Q Consensus 430 s~G~l~~~~~~~L~~L-knifGLg~~EAe~I~~dV~~kiYR~rL~~~v~sg~le~a~SkA~~LQ~lc~~L~Fdpe~A~~i 508 (1009)
.+|+++.++...+..+ .+.||++..++..++ ..+++.. +...+-..+.+.+-.. |+|+.-..+
T Consensus 12 aDG~v~~~E~~~i~~~l~~~~~l~~~~~~~l~-----~~~~~~~---------~~~~~~~~~~~~~~~~--~~~~~r~~~ 75 (104)
T cd07313 12 ADGEYDEEERAAIDRLLAERFGLDAEEAAELL-----AEAEALE---------EEAPDLYEFTSLIKEH--FDYEERLEL 75 (104)
T ss_pred HcCCCCHHHHHHHHHHHHHHhCcCHHHHHHHH-----HHHHHHH---------HhCCCHHHHHHHHHHh--CCHHHHHHH
Confidence 7999999999999887 667999976665554 2333333 3334555566664443 366665555
Q ss_pred HHHHHHHHHHHHhhcCCCChHhHHHHHhhHHhh
Q 001818 509 HEEIYRQKLQQCVADGELNDEDVAALLRLRVML 541 (1009)
Q Consensus 509 heeIYr~kL~q~Vsd~~ltdedv~aLlr~R~~L 541 (1009)
-+.++ +=..+||.++..+...|.++-..|
T Consensus 76 l~~L~----~vA~ADG~~~~~E~~~l~~ia~~L 104 (104)
T cd07313 76 VEALW----EVAYADGELDEYEEHLIRRVADLL 104 (104)
T ss_pred HHHHH----HHHHhcCCCCHHHHHHHHHHHhhC
Confidence 55444 222369999999999998876543
No 15
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=79.12 E-value=85 Score=34.90 Aligned_cols=109 Identities=17% Similarity=0.120 Sum_probs=72.4
Q ss_pred CCCCccchHHHHHHHHHHHhCCCcchhhHHHHHHhhHHHHHHHHhhhcCCcccccCChhHHHHhhhhhccCChhhHHHHH
Q 001818 430 SGGRMEESKLAALNQLRNIFGLGKRESEAIIVDVTSKVYRKRLGQAVSGGALEAADSKASFLQSLCEELHFDPQKASEIH 509 (1009)
Q Consensus 430 s~G~l~~~~~~~L~~LknifGLg~~EAe~I~~dV~~kiYR~rL~~~v~sg~le~a~SkA~~LQ~lc~~L~Fdpe~A~~ih 509 (1009)
.+|+.+.+++.....+-+-|+|...+-... ..+|+ .|.-.. .+-..+++.+-...+-.|+....+=
T Consensus 68 ADG~Vse~Ei~~~~~l~~~~~l~~~~r~~a-----~~lf~--------~~k~~~-~~l~~~~~~~~~~~~~r~~l~~~lL 133 (267)
T PRK09430 68 AKGRVTEADIRIASQLMDRMNLHGEARRAA-----QQAFR--------EGKEPD-FPLREKLRQFRSVCGGRFDLLRMFL 133 (267)
T ss_pred cCCCcCHHHHHHHHHHHHHcCCCHHHHHHH-----HHHHH--------HhcccC-CCHHHHHHHHHHHhcccHHHHHHHH
Confidence 899999999998888888999985542222 13333 332222 4445566665554454555443332
Q ss_pred HHHHHHHHHHHhhcCCCChHhHHHHHhhHHhhccchHHHHHHHHhhh
Q 001818 510 EEIYRQKLQQCVADGELNDEDVAALLRLRVMLCVPQQTVEAAHSDIC 556 (1009)
Q Consensus 510 eeIYr~kL~q~Vsd~~ltdedv~aLlr~R~~LcIp~~~V~~ah~dic 556 (1009)
+..+ +=..+||.|+..+...|.++-..|+|+....+.+....-
T Consensus 134 ~~l~----~vA~ADG~l~~~E~~~L~~Ia~~Lgis~~df~~~~~~~~ 176 (267)
T PRK09430 134 EIQI----QAAFADGSLHPNERQVLYVIAEELGFSRFQFDQLLRMMQ 176 (267)
T ss_pred HHHH----HHHHhcCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 2222 222369999999999999999999999988887766533
No 16
>cd07177 terB_like tellurium resistance terB-like protein. This family consists of tellurium resistance terB proteins, N-terminal domain of heat shock DnaJ-like proteins, N-terminal domain of Mo-dependent nitrogenase-like proteins, C-terminal domain of ABC transporter ATP-binding proteins, C-terminal domain of serine/threonine protein kinase, and many hypothetical bacterial proteins. The function of this family is unknown.
Probab=76.81 E-value=55 Score=29.25 Aligned_cols=99 Identities=14% Similarity=0.240 Sum_probs=68.3
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHhCC-ChHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHcccchhhhcc
Q 001818 777 QQAEVILADGQLTKARIEQLNEVQKQVGL-PSEYAQKIIKNITTTKMAAAIETAVAQGKLNIKQIRELKEASVDLDNMIS 855 (1009)
Q Consensus 777 qqaeqiL~dG~Lt~akae~L~eiq~qLgL-p~e~AqKiIk~it~~Kms~~ie~~va~GkL~~~~V~eLke~gV~L~~~is 855 (1009)
-.+..+.+||+++.+..+.+.++=.+++. ++...+.+..-+....-. ..+...+..+. ...-+
T Consensus 5 ~l~~~a~aDG~i~~~E~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~------~~~~~ 68 (104)
T cd07177 5 LLLAAAKADGRVDEEEIAAIEALLRRLPLLDAEERAELIALLEEPLAE----------AGDLAALAALL------KELPD 68 (104)
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHh----------cccHHHHHHHH------HHhCC
Confidence 34455667999999999999988888765 776666666555443321 12333333322 12234
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCchHHHHHhccccc
Q 001818 856 ESLRENLFKKTVDEIFSSGTGEFDAEEVYEKIPADL 891 (1009)
Q Consensus 856 ed~R~~LFrK~V~e~issGtg~fD~ee~~~kip~dL 891 (1009)
.++|..+++-.+.=+.++|..+-.+..+++++...|
T Consensus 69 ~~~r~~~l~~~~~ia~aDG~~~~~E~~~l~~l~~~L 104 (104)
T cd07177 69 AELREALLAALWEVALADGELDPEERALLRRLADAL 104 (104)
T ss_pred HHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHhhC
Confidence 589999999999999999998777778888776543
No 17
>PF07216 LcrG: LcrG protein; InterPro: IPR009863 This family consists of several bacterial LcrG proteins. Yersiniae are equipped with the Yop virulon, an apparatus that allows extracellular bacteria to deliver toxic Yop proteins inside the host cell cytosol in order to sabotage the communication networks of the host cell or even to cause cell death. LcrG is a component of the Yop virulon involved in the regulation of secretion of the Yops []. This protein is found in type III secretion operons, along with LcrR, H and V. Also known as PcrG in Pseudomonas, the prot ein is believed to make a 1:1 complex with PcrV (LcrV) []. Mutations in LcrG cause premature secretion of effector proteins into the medium [].
Probab=66.09 E-value=12 Score=35.98 Aligned_cols=45 Identities=22% Similarity=0.317 Sum_probs=37.7
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHH
Q 001818 777 QQAEVILADGQLTKARIEQLNEVQKQVGLPSEYAQKIIKNITTTKMAA 824 (1009)
Q Consensus 777 qqaeqiL~dG~Lt~akae~L~eiq~qLgLp~e~AqKiIk~it~~Kms~ 824 (1009)
+|||.++.| .+.|.+.|+||++.||+.|..++.+..+..++-|..
T Consensus 12 ~~AE~AI~d---sd~R~~llqEm~~gLg~~p~ag~lLf~~~~~~~~k~ 56 (93)
T PF07216_consen 12 EQAELAIRD---SDHRNDLLQEMLEGLGLGPVAGELLFGGSSPELMKQ 56 (93)
T ss_pred HHHHHHHHh---hHHHHHHHHHHHHhcCCChhHHHHHhcCCCHHHHHH
Confidence 678888888 667999999999999999999999999944444433
No 18
>TIGR02573 LcrG_PcrG type III secretion protein LcrG. This protein is found in type III secretion operons, along with LcrR, H and V. Also known as PcrG in Pseudomonas, the protein is believed to make a 1:1 complex with PcrV (LcrV). Mutants of LcrG cause premature secretion of effector proteins into the medium.
Probab=64.39 E-value=16 Score=35.04 Aligned_cols=50 Identities=22% Similarity=0.301 Sum_probs=41.8
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHH
Q 001818 777 QQAEVILADGQLTKARIEQLNEVQKQVGLPSEYAQKIIKNITTTKMAAAIETA 829 (1009)
Q Consensus 777 qqaeqiL~dG~Lt~akae~L~eiq~qLgLp~e~AqKiIk~it~~Kms~~ie~~ 829 (1009)
+|||..++| ++.|...|+||+.-||+.|+.|+.+..+...+-|+.+=+..
T Consensus 9 ~~AElAI~d---sd~R~~llqEm~~gLgl~p~ag~~Lf~~~~~e~~~~AEqEL 58 (90)
T TIGR02573 9 QAAELAIRD---SDERNDLLQEMWQGLGLGPVAGEVLFGGLNAELMQHAEQEL 58 (90)
T ss_pred HHHHHHHhc---hHHHHHHHHHHHHHcCCChHHHHHHHcCCCHHHHHHHHHHH
Confidence 678888888 67799999999999999999999999977777666544433
No 19
>cd07177 terB_like tellurium resistance terB-like protein. This family consists of tellurium resistance terB proteins, N-terminal domain of heat shock DnaJ-like proteins, N-terminal domain of Mo-dependent nitrogenase-like proteins, C-terminal domain of ABC transporter ATP-binding proteins, C-terminal domain of serine/threonine protein kinase, and many hypothetical bacterial proteins. The function of this family is unknown.
Probab=60.07 E-value=83 Score=28.12 Aligned_cols=94 Identities=31% Similarity=0.412 Sum_probs=52.5
Q ss_pred cCCCCCccchHHHHHHHHHHHh-CCCcchhhHHHHHHhhHHHHHHHHhhhcCCcccccCChhHHHHhhhhhccCChhhHH
Q 001818 428 SLSGGRMEESKLAALNQLRNIF-GLGKRESEAIIVDVTSKVYRKRLGQAVSGGALEAADSKASFLQSLCEELHFDPQKAS 506 (1009)
Q Consensus 428 ~Ls~G~l~~~~~~~L~~Lknif-GLg~~EAe~I~~dV~~kiYR~rL~~~v~sg~le~a~SkA~~LQ~lc~~L~Fdpe~A~ 506 (1009)
+..+|++++++...+.++=.-+ +++..+...+. +......+. ..++. .+..+...+. ++
T Consensus 10 a~aDG~i~~~E~~~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-------------~~~~~-~~~~~~~~~~-~~---- 69 (104)
T cd07177 10 AKADGRVDEEEIAAIEALLRRLPLLDAEERAELI-ALLEEPLAE-------------AGDLA-ALAALLKELP-DA---- 69 (104)
T ss_pred HHhcCCCCHHHHHHHHHHHHHHhCCCHHHHHHHH-HHHHHHHHh-------------cccHH-HHHHHHHHhC-CH----
Confidence 4469999999999998665554 55544443332 222222221 01111 1122111111 11
Q ss_pred HHHHHHHHHHHHHHhhcCCCChHhHHHHHhhHHhh
Q 001818 507 EIHEEIYRQKLQQCVADGELNDEDVAALLRLRVML 541 (1009)
Q Consensus 507 ~iheeIYr~kL~q~Vsd~~ltdedv~aLlr~R~~L 541 (1009)
+-.+.+|+.-..=+-+||.+++.+...|.++...|
T Consensus 70 ~~r~~~l~~~~~ia~aDG~~~~~E~~~l~~l~~~L 104 (104)
T cd07177 70 ELREALLAALWEVALADGELDPEERALLRRLADAL 104 (104)
T ss_pred HHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHhhC
Confidence 44555565555555679999999999999887654
No 20
>TIGR02675 tape_meas_nterm tape measure domain. Proteins containing this domain are strictly bacterial, including bacteriophage and prophage regions of bacterial genomes. Most members are 800 to 1800 amino acids long, making them among the longest predicted proteins of their respective phage genomes, where they are encoded in tail protein regions. This roughly 80-residue domain described here usually begins between residue 100 and 250. Many members are known or predicted to act as phage tail tape measure proteins, a minor tail component that regulates tail length.
Probab=59.21 E-value=29 Score=31.66 Aligned_cols=74 Identities=23% Similarity=0.343 Sum_probs=46.8
Q ss_pred hhhhhcccCCChHHHHHHHHhHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHH
Q 001818 749 LSQLGGILGLTTKEIVDVHRGLAEQAFRQQAEVILADGQLTKARIEQLNEVQKQVGLPSEYAQKIIKNITTTKMAAAIET 828 (1009)
Q Consensus 749 LnQLg~ILGL~~kEi~~VH~~laeqAyrqqaeqiL~dG~Lt~akae~L~eiq~qLgLp~e~AqKiIk~it~~Kms~~ie~ 828 (1009)
||++.-+.|.+..++..+- .|+.|++++|+|+.++.-++. ++ +|+ -.+.+-|..-. -...+..
T Consensus 1 ~~~a~~~~G~s~e~~~~~~---------~ql~Q~~~~Gkv~~ee~n~~~---e~--~p~-~~~~lAk~~G~--t~~~l~~ 63 (75)
T TIGR02675 1 INDAGAASGASAEEADGAL---------IQLSQMLASGKLRGEEINSLL---EA--LPG-ALQALAKAMGV--TRGELRK 63 (75)
T ss_pred CchHHHHhCCCHHHHHHHH---------HHHHHHHHcCcccHHHHHHHH---HH--hHH-HHHHHHHHhCC--CHHHHHH
Confidence 4677888999998887765 467899999999988765554 33 442 33333332211 1123344
Q ss_pred HHHcCCCCHHH
Q 001818 829 AVAQGKLNIKQ 839 (1009)
Q Consensus 829 ~va~GkL~~~~ 839 (1009)
.+.+|+||.++
T Consensus 64 ~~~~Gkit~~~ 74 (75)
T TIGR02675 64 MLSDGKLTADV 74 (75)
T ss_pred HHHCCCCcccc
Confidence 67778777654
No 21
>PHA00666 putative protease
Probab=55.86 E-value=28 Score=38.35 Aligned_cols=44 Identities=25% Similarity=0.475 Sum_probs=35.2
Q ss_pred hcCC-CCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHH
Q 001818 784 ADGQ-LTKARIEQLNEVQKQVGLPSEYAQKIIKNITTTKMAAAIETA 829 (1009)
Q Consensus 784 ~dG~-Lt~akae~L~eiq~qLgLp~e~AqKiIk~it~~Kms~~ie~~ 829 (1009)
..|. |+..-......+|.+||||+|.|||+.. .| .||...|+..
T Consensus 92 PEG~elD~~~l~~F~~~a~ElgLtqEQAQklvD-~y-~ki~~~~qq~ 136 (233)
T PHA00666 92 AEGVELDTGALGAFEPVARELNLTNEQAQKVVD-LY-TKILPVVQQR 136 (233)
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHH-HH-HHhhHHHHHH
Confidence 3566 9999999999999999999999999999 55 5555544433
No 22
>PF03735 ENT: ENT domain; InterPro: IPR005491 This entry represents a protein regulator which is able to repress transcription, possibly via its interaction with a multi protein chromatin re-modeling complex that modifies the chromatin. Its interaction with BRCA2 suggests that it may play a central role in the DNA repair function of BRCA2 []. ; PDB: 1UZ3_B 1UTU_B 2FMM_E.
Probab=53.95 E-value=98 Score=28.73 Aligned_cols=50 Identities=22% Similarity=0.223 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHhhcCCCChHhHHHHHhhHHhhccchHHHHHHHHhh
Q 001818 506 SEIHEEIYRQKLQQCVADGELNDEDVAALLRLRVMLCVPQQTVEAAHSDI 555 (1009)
Q Consensus 506 ~~iheeIYr~kL~q~Vsd~~ltdedv~aLlr~R~~LcIp~~~V~~ah~di 555 (1009)
..++.+=|.-.|.-+-+.|.||.+.-.-|-.+|..|+|+++.=....+-+
T Consensus 6 ~~LE~eAY~svl~Af~Aqg~lsweke~lLt~Lr~~L~IS~e~H~~~l~~~ 55 (73)
T PF03735_consen 6 HRLELEAYSSVLRAFRAQGPLSWEKEKLLTELRKELNISDEEHREELRRA 55 (73)
T ss_dssp HHHHHHHHHHHHHHHHHHSS--HHHHHHHHHHHHHTT--HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 56777889999999999999999999999999999999987654444433
No 23
>PRK11280 hypothetical protein; Provisional
Probab=51.44 E-value=14 Score=38.96 Aligned_cols=33 Identities=36% Similarity=0.593 Sum_probs=16.3
Q ss_pred hhhhhccccccCCCC-c-hhHHHHHHHHhhhhhHH
Q 001818 97 VFAGFKLGSKYGGGS-R-NVAIGGAAILGAAGGAM 129 (1009)
Q Consensus 97 ~a~G~~~G~~~~~~~-r-~aa~~gaav~gaa~~a~ 129 (1009)
+.+|.++|..+|+|+ | .|+++||++.|.+|...
T Consensus 72 av~Gg~~G~~iGgG~Gr~~at~~Ga~~G~~~G~~i 106 (170)
T PRK11280 72 AVAGGVLGHQFGGGRGKDVATVAGALGGGYAGNQI 106 (170)
T ss_pred HHHHHHhhhhccCCCccHHHHHHHHHHHHHHHHHH
Confidence 344556777775442 2 44444444444444433
No 24
>COG2979 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=50.68 E-value=1.2e+02 Score=33.40 Aligned_cols=111 Identities=17% Similarity=0.186 Sum_probs=82.4
Q ss_pred HHHHHHHHHhccCCCCCccchHHHHHHHHHHHhCCCcchhhHHHHHHhhHHHHHHHHhhhcCCcccccCChhHHHHhhhh
Q 001818 417 LKLLYRAYVTDSLSGGRMEESKLAALNQLRNIFGLGKRESEAIIVDVTSKVYRKRLGQAVSGGALEAADSKASFLQSLCE 496 (1009)
Q Consensus 417 LK~LYraYL~e~Ls~G~l~~~~~~~L~~LknifGLg~~EAe~I~~dV~~kiYR~rL~~~v~sg~le~a~SkA~~LQ~lc~ 496 (1009)
--.|.++-+.-+-++|.+++.|-+.|-+==...|.+..=..=+.-|+..|+==.+|..++..
T Consensus 110 s~~ll~AmIaAAkaDGhIDe~ERa~I~~~l~esG~d~e~~~~le~El~~PlD~~~ia~~a~~------------------ 171 (225)
T COG2979 110 SLTLLRAMIAAAKADGHIDEKERARIMQKLQESGVDPEAQAFLEQELEQPLDPDEIAAAARN------------------ 171 (225)
T ss_pred HHHHHHHHHHHHhhcCCcCHHHHHHHHHHHHHcCCCHHHHHHHHHHHhCCCCHHHHHHHhcC------------------
Confidence 45688899999999999999999999877778888855444444555555444444333322
Q ss_pred hccCChhhHHHHHHHHHHHHHHHHhhcCCCChHhHHHHHhhHHhhccchHHHHHHHHhhhh
Q 001818 497 ELHFDPQKASEIHEEIYRQKLQQCVADGELNDEDVAALLRLRVMLCVPQQTVEAAHSDICG 557 (1009)
Q Consensus 497 ~L~Fdpe~A~~iheeIYr~kL~q~Vsd~~ltdedv~aLlr~R~~LcIp~~~V~~ah~dicg 557 (1009)
-+..-||| |-+|+.=-..+--+-.+|..+-.-|+||++.|+...++...
T Consensus 172 ---------ee~a~ElY---~ASrl~id~d~r~Er~YL~~La~~L~L~dalvd~lE~qv~~ 220 (225)
T COG2979 172 ---------EEQALELY---LASRLAIDDDSRMERSYLNALAGALGLPDALVDHLERQVGQ 220 (225)
T ss_pred ---------HHHHHHHH---HHHHHhcCchhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 33445789 77777755677778899999999999999999998877643
No 25
>PF10025 DUF2267: Uncharacterized conserved protein (DUF2267); InterPro: IPR018727 This entry contains proteins that have no known function. ; PDB: 2YSK_A.
Probab=48.31 E-value=1.1e+02 Score=29.97 Aligned_cols=91 Identities=25% Similarity=0.377 Sum_probs=58.8
Q ss_pred HHHHHHHHHHhCC-ChHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHcccchhhhccHHHHHHHHHHHHHHHH
Q 001818 793 IEQLNEVQKQVGL-PSEYAQKIIKNITTTKMAAAIETAVAQGKLNIKQIRELKEASVDLDNMISESLRENLFKKTVDEIF 871 (1009)
Q Consensus 793 ae~L~eiq~qLgL-p~e~AqKiIk~it~~Kms~~ie~~va~GkL~~~~V~eLke~gV~L~~~ised~R~~LFrK~V~e~i 871 (1009)
-+||++++++.|+ +.+.|..+.+.. + ..-..+|+.++...|- +-++..+|+-++. .-..
T Consensus 3 ~~fl~~V~~~~~l~~~~~A~~a~~av----L------~~L~~rL~~~ea~~La-------~qLP~~l~~~l~~---gw~~ 62 (125)
T PF10025_consen 3 DEFLDEVRERAGLPDREEAYRATRAV----L------HTLRERLPPEEAADLA-------AQLPMELRGILYE---GWRP 62 (125)
T ss_dssp HHHHHHHHHHHT---HHHHHHHHHHH----H------HHHHTTS-HHHHHHHH-------TTS-HHHHHHHHT---T--T
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHH----H------HHHHHHCCHHHHHHHH-------HhCCHHHHHHHHh---cccC
Confidence 3799999999999 667777665543 3 2335689999988765 4468888888876 3345
Q ss_pred hcCCCCCchHHHHHhcccccCCCHH-HHHHHHH
Q 001818 872 SSGTGEFDAEEVYEKIPADLSINAE-KARRVVH 903 (1009)
Q Consensus 872 ssGtg~fD~ee~~~kip~dL~I~~e-kAk~Iv~ 903 (1009)
..+.+.|+.++++..+...++.+.+ .|...+.
T Consensus 63 ~~~~~~~~~~eF~~rVa~~~~~~~~~~a~~~~~ 95 (125)
T PF10025_consen 63 SEGPGRFDLDEFLARVAERLGGADEDDAERLAR 95 (125)
T ss_dssp TS-----SHHHHHHHHHHTSEETTEE-HHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHccCCCcccHHHHHH
Confidence 6667779999999999998888777 6665443
No 26
>PF13488 Gly-zipper_Omp: Glycine zipper
Probab=47.54 E-value=24 Score=29.87 Aligned_cols=38 Identities=34% Similarity=0.419 Sum_probs=25.3
Q ss_pred hhhhhccccccCCCCchhHHHHHHHHhhhhhHHHHHhhh
Q 001818 97 VFAGFKLGSKYGGGSRNVAIGGAAILGAAGGAMAYAMNA 135 (1009)
Q Consensus 97 ~a~G~~~G~~~~~~~r~aa~~gaav~gaa~~a~a~~~ns 135 (1009)
+++|.++|... +++...++.||++.+++|++.-+..++
T Consensus 7 A~~Ga~iG~~~-g~~~~ga~iGa~vGa~~G~~ig~~~d~ 44 (46)
T PF13488_consen 7 AAAGAAIGAAT-GGPGKGAAIGAAVGAAVGAAIGNYMDK 44 (46)
T ss_pred HHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHHHHHhc
Confidence 34566677776 455567777787777777776666554
No 27
>COG4103 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=46.99 E-value=2e+02 Score=30.09 Aligned_cols=111 Identities=20% Similarity=0.243 Sum_probs=79.9
Q ss_pred HHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHH-HhCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHccc
Q 001818 770 LAEQAFRQQAEVILADGQLTKARIEQLNEVQK-QVGLPSEYAQKIIKNITTTKMAAAIETAVAQGKLNIKQIRELKEASV 848 (1009)
Q Consensus 770 laeqAyrqqaeqiL~dG~Lt~akae~L~eiq~-qLgLp~e~AqKiIk~it~~Kms~~ie~~va~GkL~~~~V~eLke~gV 848 (1009)
||.-+ =...++.+||.-.++..+.+.+|++ -+|++.+....+|+-...--... -.|-.+--
T Consensus 29 lAa~~--Llf~Vm~ADG~v~~~E~~a~r~il~~~f~i~~~~l~ali~~~e~~~~Ea----------------~d~y~fts 90 (148)
T COG4103 29 LAAAA--LLFHVMEADGTVSESEREAFRAILKENFGIDGEELDALIEAGEEAGYEA----------------IDLYSFTS 90 (148)
T ss_pred HHHHH--HHHHHHhcccCcCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhHHH----------------HHHHHHHH
Confidence 44444 4567899999999997777777665 58999999999988665433322 11122222
Q ss_pred chhhhccHHHHHHHHHHHHHHHHhcCCCCCchHHHHHhcccccCCCHHHH
Q 001818 849 DLDNMISESLRENLFKKTVDEIFSSGTGEFDAEEVYEKIPADLSINAEKA 898 (1009)
Q Consensus 849 ~L~~~ised~R~~LFrK~V~e~issGtg~fD~ee~~~kip~dL~I~~ekA 898 (1009)
+|-..+.+++|-.|-+---+=+..+|+-+=-+..++.++..=|+|..+--
T Consensus 91 ~l~r~Ld~e~R~eli~~mweIa~ADg~l~e~Ed~vi~RvAeLLgV~~~d~ 140 (148)
T COG4103 91 VLKRHLDEEQRLELIGLMWEIAYADGELDESEDHVIWRVAELLGVSPEDR 140 (148)
T ss_pred HHHHhcCHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHhCCCHHHH
Confidence 33445677888888887778888999987777799999999999998753
No 28
>smart00501 BRIGHT BRIGHT, ARID (A/T-rich interaction domain) domain. DNA-binding domain containing a helix-turn-helix structure
Probab=46.63 E-value=12 Score=34.75 Aligned_cols=50 Identities=20% Similarity=0.343 Sum_probs=40.8
Q ss_pred HhhhhhcCCCCCCCCCH-HHHHHHHHhhcccchhhhhhHHHHHHHHHHhhc
Q 001818 144 RLHDYVTDCNDPGAVKR-EDIEAIASKYGVSKQDEAFNAELSEIYCRFVTS 193 (1009)
Q Consensus 144 ~LhN~~~~~~Dp~~l~~-e~v~ai~~kyGvs~~~~~~~~el~~lY~~~~~s 193 (1009)
.||+.|..++-...++. .....|+.++|+..+.......|+.+|.+||..
T Consensus 36 ~Ly~~V~~~GG~~~v~~~~~W~~Va~~lg~~~~~~~~~~~lk~~Y~k~L~~ 86 (93)
T smart00501 36 RLYRLVQERGGYDQVTKDKKWKEIARELGIPDTSTSAASSLRKHYERYLLP 86 (93)
T ss_pred HHHHHHHHccCHHHHcCCCCHHHHHHHhCCCcccchHHHHHHHHHHHHhHH
Confidence 47788888877777764 668999999999987666677999999999853
No 29
>KOG2534 consensus DNA polymerase IV (family X) [Replication, recombination and repair]
Probab=45.73 E-value=65 Score=37.37 Aligned_cols=99 Identities=23% Similarity=0.348 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHHhhhccccccchhHHHHHHHHHHHhhHHHHhhccCCC-------cccccCCccceeeeccccCCCCcch
Q 001818 343 LVEENIVTALSILKSRTRVVKGVAQVVEELDKVLAFNNLLISLRQHPN-------ADRFARGVGPVSLVGGEFDGDRKMD 415 (1009)
Q Consensus 343 ~ve~~is~al~~lk~rt~~~~~~~~~v~el~~vLa~n~~L~~l~~~~d-------~~~f~~G~gpvsl~Gg~~d~d~k~d 415 (1009)
..-+++..|+++|+.-- ++-.+....++|-+...+|++.|- +.. +||+||=+.
T Consensus 10 ~~N~~~~~aleiLa~~~-------ev~g~~~r~~~y~~Aasvlk~~p~~I~S~~ea~~-lP~iG~kia------------ 69 (353)
T KOG2534|consen 10 NNNQIFTEALEILAEAY-------EVEGEEDRARAYRRAASVLKSLPFPITSGEEAEK-LPGIGPKIA------------ 69 (353)
T ss_pred cccHHHHHHHHHHHHhh-------cccccHHHHHHHHHHHHHHHhCCCCcccHHHhcC-CCCCCHHHH------------
Confidence 34567889999997654 455678899999999999999553 233 677776443
Q ss_pred HHHHHHHHHHhccCCCC--C-ccchHHHHHHHHHHHhCCCcchhhHHHHHHhhHHHHHHH
Q 001818 416 DLKLLYRAYVTDSLSGG--R-MEESKLAALNQLRNIFGLGKRESEAIIVDVTSKVYRKRL 472 (1009)
Q Consensus 416 DLK~LYraYL~e~Ls~G--~-l~~~~~~~L~~LknifGLg~~EAe~I~~dV~~kiYR~rL 472 (1009)
.+..-+|+.....+ + ..|+-...|.-|.||||.|.+- ..+-||+-+
T Consensus 70 ---~ki~EiletG~l~ele~v~~de~~~~lklFtnifGvG~kt--------A~~Wy~~Gf 118 (353)
T KOG2534|consen 70 ---EKIQEILETGVLRELEAVRNDERSQSLKLFTNIFGVGLKT--------AEKWYREGF 118 (353)
T ss_pred ---HHHHHHHHcCCchhHHHHhcchhHHHHHHHHHHhccCHHH--------HHHHHHhhh
Confidence 23333444443332 2 3346667899999999999554 467788776
No 30
>PRK10510 putative outer membrane lipoprotein; Provisional
Probab=45.62 E-value=15 Score=39.51 Aligned_cols=40 Identities=30% Similarity=0.312 Sum_probs=23.6
Q ss_pred hhhccccccCCCCchhHHHHHHHHhhhhhHHHHHhhhccchh
Q 001818 99 AGFKLGSKYGGGSRNVAIGGAAILGAAGGAMAYAMNAAVPEV 140 (1009)
Q Consensus 99 ~G~~~G~~~~~~~r~aa~~gaav~gaa~~a~a~~~ns~~p~v 140 (1009)
+|+.+|... +....++.||++.|++|++..|.++....+.
T Consensus 49 ~G~~~g~~~--~~~~~a~~ga~~G~~~G~~~g~~~d~q~~~l 88 (219)
T PRK10510 49 IGALSSSKK--DRGKGALIGAAAGAALGGGVGYYMDVQEAKL 88 (219)
T ss_pred HHhhhcCCC--cccchhhhHhHHHhhhhhhhhhhhhhHHHHH
Confidence 344455332 1224566677777777777777776655443
No 31
>COG3793 TerB Tellurite resistance protein [Inorganic ion transport and metabolism]
Probab=44.83 E-value=48 Score=34.34 Aligned_cols=78 Identities=22% Similarity=0.319 Sum_probs=55.9
Q ss_pred CCcchHHHHHHHHHHHHhccceeeccccccccccccchHHHhhhhhhcccCCChHHHHHHHHhH--HHHHHHHHHHHHhh
Q 001818 707 LPERDRTDLYKTYLLYCLTGEVTKIPFGASITTKKDDSEYVLLSQLGGILGLTTKEIVDVHRGL--AEQAFRQQAEVILA 784 (1009)
Q Consensus 707 l~~rdr~dLYr~YL~~ClsGe~~~~p~G~~i~~~kdqsEf~~LnQLg~ILGL~~kEi~~VH~~l--aeqAyrqqaeqiL~ 784 (1009)
++..++..+|.+|.+ |+.=++ ++..-. -.++|+.+..+- |+-+-+--.-+.-+
T Consensus 62 f~~~~i~~~~~~~~~-~~~~d~----------------~~gk~e--------a~~~I~~lk~d~e~Ae~vL~vAv~VA~a 116 (144)
T COG3793 62 FDSNEINEIFETLVG-SFDTDF----------------EIGKRE--------AMKEIEDLKHDTEAAEDVLRVAVAVAEA 116 (144)
T ss_pred ccHHHHHHHHHHHHH-Hhhhhh----------------hhhHHH--------HHHHHHHhcCChHHHHHHHHHHHHHhhc
Confidence 445577888888888 773311 111111 134566665554 77788877888889
Q ss_pred cCCCCHHHHHHHHHHHHHhCCChHH
Q 001818 785 DGQLTKARIEQLNEVQKQVGLPSEY 809 (1009)
Q Consensus 785 dG~Lt~akae~L~eiq~qLgLp~e~ 809 (1009)
||-.+++.-+.|.+||..|||+|..
T Consensus 117 DG~~d~~E~avl~eI~~aLGL~p~~ 141 (144)
T COG3793 117 DGEFEAEERAVLREIAGALGLSPAE 141 (144)
T ss_pred CCCCCHHHHHHHHHHHHHhCCCHHh
Confidence 9999999999999999999999864
No 32
>PF05818 TraT: Enterobacterial TraT complement resistance protein; InterPro: IPR008874 The traT gene is one of the F factor transfer genes and encodes an outer membrane protein which is involved in interactions between Escherichia coli and its surroundings []. The protein plays a role in preventing unproductive conjugation between bacteria carrying like plasmids.; GO: 0046999 regulation of conjugation, 0019867 outer membrane
Probab=42.53 E-value=22 Score=38.81 Aligned_cols=28 Identities=29% Similarity=0.370 Sum_probs=13.8
Q ss_pred hhhhccccccCCCCchhHHHHHHHHhhhh
Q 001818 98 FAGFKLGSKYGGGSRNVAIGGAAILGAAG 126 (1009)
Q Consensus 98 a~G~~~G~~~~~~~r~aa~~gaav~gaa~ 126 (1009)
++|+++|... +++..+++|++++.|++|
T Consensus 95 ~~G~~~g~~~-~~~~g~~~G~GlaGalig 122 (215)
T PF05818_consen 95 ATGAAIGAYN-SGSAGAAIGAGLAGALIG 122 (215)
T ss_pred HHhhhhcccc-CCccchhhhhhHHHhHHH
Confidence 3667777433 455555555343333333
No 33
>COG1405 SUA7 Transcription initiation factor TFIIIB, Brf1 subunit/Transcription initiation factor TFIIB [Transcription]
Probab=41.42 E-value=5e+02 Score=29.63 Aligned_cols=105 Identities=20% Similarity=0.296 Sum_probs=71.9
Q ss_pred HHHHHHHHHHHhCCCh---HHHHHHHHHHHHH----------HHHHHHHHHHHcCC--CCHHHHHHHHHcccchhhhccH
Q 001818 792 RIEQLNEVQKQVGLPS---EYAQKIIKNITTT----------KMAAAIETAVAQGK--LNIKQIRELKEASVDLDNMISE 856 (1009)
Q Consensus 792 kae~L~eiq~qLgLp~---e~AqKiIk~it~~----------Kms~~ie~~va~Gk--L~~~~V~eLke~gV~L~~~ise 856 (1009)
-.+.|..++..||||. |.|..|.+..... .+++.+-.+-.+.. .|.++|.++.+ ++.
T Consensus 100 a~~~l~~~~~~l~LP~~v~e~A~~iyr~a~~~~l~rGRsie~v~AA~iY~acR~~~~prtl~eIa~a~~--------V~~ 171 (285)
T COG1405 100 ALEELERIASALGLPESVRETAARIYRKAVDKGLLRGRSIESVAAACIYAACRINGVPRTLDEIAKALG--------VSK 171 (285)
T ss_pred HHHHHHHHHHHhCCCchHHHHHHHHHHHHhhcCCCcCCcHHHHHHHHHHHHHHHcCCCccHHHHHHHHC--------CCH
Confidence 5678999999999996 5677887766553 34444444444444 67888888776 233
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCchHHHHHhcccccCCCHHHHHHHHHHHH
Q 001818 857 SLRENLFKKTVDEIFSSGTGEFDAEEVYEKIPADLSINAEKARRVVHELA 906 (1009)
Q Consensus 857 d~R~~LFrK~V~e~issGtg~fD~ee~~~kip~dL~I~~ekAk~Iv~~~a 906 (1009)
..=++.|++.+.+.. -....-|..+.+.++..+|+|+.++-+. ..+++
T Consensus 172 kei~rtyr~~~~~L~-l~~~~~~p~~yi~rf~s~L~l~~~v~~~-a~ei~ 219 (285)
T COG1405 172 KEIGRTYRLLVRELK-LKIPPVDPSDYIPRFASKLGLSDEVRRK-AIEIV 219 (285)
T ss_pred HHHHHHHHHHHHhcC-CCCCCCCHHHHHHHHHHHcCCCHHHHHH-HHHHH
Confidence 444667775555544 3466689999999999999999555443 44443
No 34
>TIGR02675 tape_meas_nterm tape measure domain. Proteins containing this domain are strictly bacterial, including bacteriophage and prophage regions of bacterial genomes. Most members are 800 to 1800 amino acids long, making them among the longest predicted proteins of their respective phage genomes, where they are encoded in tail protein regions. This roughly 80-residue domain described here usually begins between residue 100 and 250. Many members are known or predicted to act as phage tail tape measure proteins, a minor tail component that regulates tail length.
Probab=40.19 E-value=95 Score=28.37 Aligned_cols=71 Identities=20% Similarity=0.253 Sum_probs=52.6
Q ss_pred HHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHcccchhhhccHHHHHHHHHHHHHHHHhcCCCC
Q 001818 798 EVQKQVGLPSEYAQKIIKNITTTKMAAAIETAVAQGKLNIKQIRELKEASVDLDNMISESLRENLFKKTVDEIFSSGTGE 877 (1009)
Q Consensus 798 eiq~qLgLp~e~AqKiIk~it~~Kms~~ie~~va~GkL~~~~V~eLke~gV~L~~~ised~R~~LFrK~V~e~issGtg~ 877 (1009)
+.-...|.+.+.++-++.. + ...++.|+++.++.+-|.|.+..+-..+.+. .......+.+.+++|..+
T Consensus 3 ~a~~~~G~s~e~~~~~~~q-----l----~Q~~~~Gkv~~ee~n~~~e~~p~~~~~lAk~--~G~t~~~l~~~~~~Gkit 71 (75)
T TIGR02675 3 DAGAASGASAEEADGALIQ-----L----SQMLASGKLRGEEINSLLEALPGALQALAKA--MGVTRGELRKMLSDGKLT 71 (75)
T ss_pred hHHHHhCCCHHHHHHHHHH-----H----HHHHHcCcccHHHHHHHHHHhHHHHHHHHHH--hCCCHHHHHHHHHCCCCc
Confidence 4455678888887776543 3 3378899999999999999888776665553 346677788888888876
Q ss_pred Cc
Q 001818 878 FD 879 (1009)
Q Consensus 878 fD 879 (1009)
.|
T Consensus 72 ~~ 73 (75)
T TIGR02675 72 AD 73 (75)
T ss_pred cc
Confidence 55
No 35
>PF03280 Lipase_chap: Proteobacterial lipase chaperone protein; InterPro: IPR004961 The proteobacterial lipase chaperone is a lipase helper protein which may be involved in the folding of extracellular lipase during its passage through the periplasm [].; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016020 membrane; PDB: 2ES4_E.
Probab=38.83 E-value=3e+02 Score=29.18 Aligned_cols=94 Identities=20% Similarity=0.306 Sum_probs=57.6
Q ss_pred HHHHHHHHH---HHHhhcCCCCHH-HHHHHHHHHHHhCCChHHHHHHHHHHHH-HHHHHHHHHHHHcCCCCHHHHHHHHH
Q 001818 771 AEQAFRQQA---EVILADGQLTKA-RIEQLNEVQKQVGLPSEYAQKIIKNITT-TKMAAAIETAVAQGKLNIKQIRELKE 845 (1009)
Q Consensus 771 aeqAyrqqa---eqiL~dG~Lt~a-kae~L~eiq~qLgLp~e~AqKiIk~it~-~Kms~~ie~~va~GkL~~~~V~eLke 845 (1009)
.|.+|+++. -.|..+..|+.+ |...|..+..+| |+ +-++-+++... .++...+...-.+| .+.+++..++.
T Consensus 57 ~E~~~~~~~l~rl~I~~d~~Ls~~ek~~~l~~l~~~l--P~-~~~~~~~~~~~~~~l~~~~~~l~~~g-~~~~~~~~~r~ 132 (195)
T PF03280_consen 57 EENAYDQYALARLAIAQDASLSDEEKQQRLAELLQQL--PE-DLQEARRNAQLLQDLQQQTQELQAQG-ASEQELRAARA 132 (195)
T ss_dssp HHHHHHHHHHHHHHHHT-TT--HHHHHHHHHHHCCCS---H-HHHHHHHHHHHHHHHHHHHHHHHHTT---HHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhC--CH-HHHHHHHhHHHHHHHHHHHHHHHHcC-CCHHHHHHHHH
Confidence 366777765 347777789998 999999988775 54 44444555444 66666666566666 89999999998
Q ss_pred cccch---hhhccHHHHHHHHHHHHH
Q 001818 846 ASVDL---DNMISESLRENLFKKTVD 868 (1009)
Q Consensus 846 ~gV~L---~~~ised~R~~LFrK~V~ 868 (1009)
..|.- +.+...|..+.-|+.-|+
T Consensus 133 ~~vg~eaA~RL~~ld~~~~~w~~r~~ 158 (195)
T PF03280_consen 133 QLVGPEAAQRLAQLDQQRAQWQQRLD 158 (195)
T ss_dssp CCC-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 88876 344555555555544443
No 36
>PRK11235 bifunctional antitoxin/transcriptional repressor RelB; Provisional
Probab=38.80 E-value=61 Score=30.49 Aligned_cols=52 Identities=35% Similarity=0.441 Sum_probs=42.5
Q ss_pred HHHhhhhhccCChhhHHHHHHHHHHHHHHHHhhcCC-------CChHhHHHHHhhHHhhccchHHH
Q 001818 490 FLQSLCEELHFDPQKASEIHEEIYRQKLQQCVADGE-------LNDEDVAALLRLRVMLCVPQQTV 548 (1009)
Q Consensus 490 ~LQ~lc~~L~Fdpe~A~~iheeIYr~kL~q~Vsd~~-------ltdedv~aLlr~R~~LcIp~~~V 548 (1009)
--+.+|++++.++..| .+..+.|++..+. +|++|.+.|.-.|..+.-|...+
T Consensus 15 ~A~~vl~~lGls~S~A-------i~~fl~qi~~~~~iPF~~~~~s~ed~~~l~~~re~~~~~~~~~ 73 (80)
T PRK11235 15 RAYAVLEKLGVTPSEA-------LRLLLQYVAENGRLPFKTVLLSDEDAALLETVRERLANPQKGI 73 (80)
T ss_pred HHHHHHHHhCCCHHHH-------HHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCe
Confidence 3467999999999988 5677888998554 78999999998888888877554
No 37
>PF05818 TraT: Enterobacterial TraT complement resistance protein; InterPro: IPR008874 The traT gene is one of the F factor transfer genes and encodes an outer membrane protein which is involved in interactions between Escherichia coli and its surroundings []. The protein plays a role in preventing unproductive conjugation between bacteria carrying like plasmids.; GO: 0046999 regulation of conjugation, 0019867 outer membrane
Probab=37.56 E-value=20 Score=39.17 Aligned_cols=45 Identities=29% Similarity=0.409 Sum_probs=26.0
Q ss_pred HhhhhhhccccccCCCCchhHHHHHHHHhhhhhHHHHHhhhccchh
Q 001818 95 GAVFAGFKLGSKYGGGSRNVAIGGAAILGAAGGAMAYAMNAAVPEV 140 (1009)
Q Consensus 95 ~a~a~G~~~G~~~~~~~r~aa~~gaav~gaa~~a~a~~~ns~~p~v 140 (1009)
+++++|.++|... |+.....-|+++++|++||+...++++.+..+
T Consensus 88 gga~~Ga~~G~~~-g~~~~~~~g~~~G~GlaGalig~~ada~v~D~ 132 (215)
T PF05818_consen 88 GGALAGAATGAAI-GAYNSGSAGAAIGAGLAGALIGMIADAMVEDV 132 (215)
T ss_pred hhHHHHhHHhhhh-ccccCCccchhhhhhHHHhHHHHHHhhhcccc
Confidence 3445555566655 33333333444555888888888877665554
No 38
>PF04391 DUF533: Protein of unknown function (DUF533); InterPro: IPR007486 Some family members may be secreted or integral membrane proteins.
Probab=36.95 E-value=2.1e+02 Score=30.79 Aligned_cols=72 Identities=18% Similarity=0.203 Sum_probs=47.9
Q ss_pred chHHHhhhhhhcccCCChHHHHHHHHh------------------HHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhC
Q 001818 743 DSEYVLLSQLGGILGLTTKEIVDVHRG------------------LAEQAFRQQAEVILADGQLTKARIEQLNEVQKQVG 804 (1009)
Q Consensus 743 qsEf~~LnQLg~ILGL~~kEi~~VH~~------------------laeqAyrqqaeqiL~dG~Lt~akae~L~eiq~qLg 804 (1009)
+.|-.++-+-=.-+|++..+-..|+.. .+.++|..= -+.-| ..+..+.+||.+|-.+|+
T Consensus 98 ~~Er~~I~~~l~~~g~d~e~~~~l~~eL~~P~d~~~la~~v~~~e~A~evY~aS--~laid-~d~~~Er~YL~~LA~aL~ 174 (188)
T PF04391_consen 98 EEERQRIEGALQELGLDAEERAWLQAELAAPLDPDALAAAVTDPEQAAEVYLAS--LLAID-VDTFAERAYLDELAQALG 174 (188)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHhCCCCHHHHHHhCCCHHHHHHHHHHH--HHHhC-CCCHHHHHHHHHHHHHhC
Confidence 555444443333345555555555443 456666533 33333 568899999999999999
Q ss_pred CChHHHHHHHHHH
Q 001818 805 LPSEYAQKIIKNI 817 (1009)
Q Consensus 805 Lp~e~AqKiIk~i 817 (1009)
||++..+.|++.+
T Consensus 175 L~~~lv~~le~~~ 187 (188)
T PF04391_consen 175 LDPDLVAQLEQQA 187 (188)
T ss_pred cCHHHHHHHHHHc
Confidence 9999999998764
No 39
>PRK04019 rplP0 acidic ribosomal protein P0; Validated
Probab=36.40 E-value=1.3e+02 Score=34.49 Aligned_cols=42 Identities=21% Similarity=0.218 Sum_probs=29.0
Q ss_pred hhcCCcccccCChhHHHHhhhhhccCChhhHHHHHHHHHHHHHHHHhhcCC-CChH
Q 001818 475 AVSGGALEAADSKASFLQSLCEELHFDPQKASEIHEEIYRQKLQQCVADGE-LNDE 529 (1009)
Q Consensus 475 ~v~sg~le~a~SkA~~LQ~lc~~L~Fdpe~A~~iheeIYr~kL~q~Vsd~~-ltde 529 (1009)
.++.|+- -.++.+.+||. ..|+-..|+-++..+..+|. ++-+
T Consensus 157 v~~~G~~-v~~~~a~lL~~------------LgI~p~~~~~~i~a~~~~G~~~~~~ 199 (330)
T PRK04019 157 VAKAGEV-ISPELANVLQK------------LGIKPIEVGLDLKAAYEDGVIYTPE 199 (330)
T ss_pred EecCCCC-cCHHHHHHHHH------------cCCCHHHhhhHHHHHHhcCCccCHH
Confidence 4566666 44666777777 55556679999988888774 5544
No 40
>TIGR01446 DnaD_dom DnaD and phage-associated domain. This model represents the conserved domain of DnaD, part of Bacillus subtilis replication restart primosome, and of a number of phage-associated proteins. Members, both chromosomal or phage-associated, are found in the Bacillus/Clostridium group of Gram-positive bacteria.
Probab=36.32 E-value=2.2e+02 Score=24.95 Aligned_cols=53 Identities=25% Similarity=0.266 Sum_probs=35.6
Q ss_pred HHHHhhcCCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Q 001818 779 AEVILADGQLTKARIEQLNEVQKQVGLPSEYAQKIIKNITTTKMAAAIETAVAQGKLNIKQIRELK 844 (1009)
Q Consensus 779 aeqiL~dG~Lt~akae~L~eiq~qLgLp~e~AqKiIk~it~~Kms~~ie~~va~GkL~~~~V~eLk 844 (1009)
.++.++. .||+-.++.|..+.++.|+|++--- .+++.++..|+.|..=|....
T Consensus 5 ~e~~~gr-~ls~~e~~~i~~~~~~~~~~~evI~------------~ai~~a~~~~~~~~~Yi~~Il 57 (73)
T TIGR01446 5 FEENFGR-MLSPFEMEDLKYWLDEFGNSPELIK------------EALKEAVSNNKANYKYIDAIL 57 (73)
T ss_pred HHHHhCC-CCCHHHHHHHHHHHHHhCCCHHHHH------------HHHHHHHHcCCCCHHHHHHHH
Confidence 3444332 7999999999999999999976322 244445556777665554443
No 41
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=36.17 E-value=1.3e+02 Score=31.62 Aligned_cols=135 Identities=21% Similarity=0.314 Sum_probs=75.1
Q ss_pred CCCCCcchHHHHHHHHHHHHh--ccceeeccccccccccccchHHHhhhhhhccc---C--CChHHHHHHHHhHHHHHHH
Q 001818 704 KDDLPERDRTDLYKTYLLYCL--TGEVTKIPFGASITTKKDDSEYVLLSQLGGIL---G--LTTKEIVDVHRGLAEQAFR 776 (1009)
Q Consensus 704 kdDl~~rdr~dLYr~YL~~Cl--sGe~~~~p~G~~i~~~kdqsEf~~LnQLg~IL---G--L~~kEi~~VH~~laeqAyr 776 (1009)
-.-++.++++++|+.|.++|. +|-+. -+.|+.|| | .+..||..+...+-.
T Consensus 11 ~~~~t~~qi~~lkeaF~l~D~d~~G~I~-------------------~~el~~ilr~lg~~~s~~ei~~l~~~~d~---- 67 (160)
T COG5126 11 FTQLTEEQIQELKEAFQLFDRDSDGLID-------------------RNELGKILRSLGFNPSEAEINKLFEEIDA---- 67 (160)
T ss_pred cccCCHHHHHHHHHHHHHhCcCCCCCCc-------------------HHHHHHHHHHcCCCCcHHHHHHHHHhccC----
Confidence 356899999999999999999 66333 34555554 3 334444444333221
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHH--HHcCCCCHHHHHHHHHcccchhhhc
Q 001818 777 QQAEVILADGQLTKARIEQLNEVQKQVGLPSEYAQKIIKNITTTKMAAAIETA--VAQGKLNIKQIRELKEASVDLDNMI 854 (1009)
Q Consensus 777 qqaeqiL~dG~Lt~akae~L~eiq~qLgLp~e~AqKiIk~it~~Kms~~ie~~--va~GkL~~~~V~eLke~gV~L~~~i 854 (1009)
+.|.++- .+||.=|-..++ +..+.+++.-+-+-. =.+|+++..+.+.... .+
T Consensus 68 -------~~~~idf--~~Fl~~ms~~~~----------~~~~~Eel~~aF~~fD~d~dG~Is~~eL~~vl~-------~l 121 (160)
T COG5126 68 -------GNETVDF--PEFLTVMSVKLK----------RGDKEEELREAFKLFDKDHDGYISIGELRRVLK-------SL 121 (160)
T ss_pred -------CCCccCH--HHHHHHHHHHhc----------cCCcHHHHHHHHHHhCCCCCceecHHHHHHHHH-------hh
Confidence 1133433 345554444442 222233333311110 1478899888877665 23
Q ss_pred cHHHHHHHHHHHHHHHHhcCCCCCchHHHHHhc
Q 001818 855 SESLRENLFKKTVDEIFSSGTGEFDAEEVYEKI 887 (1009)
Q Consensus 855 sed~R~~LFrK~V~e~issGtg~fD~ee~~~ki 887 (1009)
.+++...-..+.+...=.+|-|..+.+++++.+
T Consensus 122 ge~~~deev~~ll~~~d~d~dG~i~~~eF~~~~ 154 (160)
T COG5126 122 GERLSDEEVEKLLKEYDEDGDGEIDYEEFKKLI 154 (160)
T ss_pred cccCCHHHHHHHHHhcCCCCCceEeHHHHHHHH
Confidence 333333444445555556788888888887754
No 42
>PF01388 ARID: ARID/BRIGHT DNA binding domain; InterPro: IPR001606 Members of the recently discovered ARID (AT-rich interaction domain; also known as BRIGHT domain)) family of DNA-binding proteins are found in fungi and invertebrate and vertebrate metazoans. ARID-encoding genes are involved in a variety of biological processes including embryonic development, cell lineage gene regulation and cell cycle control. Although the specific roles of this domain and of ARID-containing proteins in transcriptional regulation are yet to be elucidated, they include both positive and negative transcriptional regulation and a likely involvement in the modification of chromatin structure []. The basic structure of the ARID domain domain appears to be a series of six alpha-helices separated by beta-strands, loops, or turns, but the structured region may extend to an additional helix at either or both ends of the basic six. Based on primary sequence homology, they can be partitioned into three structural classes: Minimal ARID proteins that consist of a core domain formed by six alpha helices; ARID proteins that supplement the core domain with an N-terminal alpha-helix; and Extended-ARID proteins, which contain the core domain and additional alpha-helices at their N- and C-termini. The human SWI-SNF complex protein p270 is an ARID family member with non-sequence-specific DNA binding activity. The ARID consensus and other structural features are common to both p270 and yeast SWI1, suggesting that p270 is a human counterpart of SWI1 []. The approximately 100-residue ARID sequence is present in a series of proteins strongly implicated in the regulation of cell growth, development, and tissue-specific gene expression. Although about a dozen ARID proteins can be identified from database searches, to date, only Bright (a regulator of B-cell-specific gene expression), dead ringer (a Drosophila melanogaster gene product required for normal development), and MRF-2 (which represses expression from the Cytomegalovirus enhancer) have been analyzed directly in regard to their DNA binding properties. Each binds preferentially to AT-rich sites. In contrast, p270 shows no sequence preference in its DNA binding activity, thereby demonstrating that AT-rich binding is not an intrinsic property of ARID domains and that ARID family proteins may be involved in a wider range of DNA interactions [].; GO: 0003677 DNA binding, 0005622 intracellular; PDB: 1C20_A 1KQQ_A 2JRZ_A 2LM1_A 2YQE_A 2JXJ_A 2EH9_A 2CXY_A 2LI6_A 1KN5_A ....
Probab=35.52 E-value=13 Score=34.08 Aligned_cols=49 Identities=16% Similarity=0.264 Sum_probs=37.8
Q ss_pred HhhhhhcCCCCCCCCCHHH-HHHHHHhhcccchhhhhhHHHHHHHHHHhh
Q 001818 144 RLHDYVTDCNDPGAVKRED-IEAIASKYGVSKQDEAFNAELSEIYCRFVT 192 (1009)
Q Consensus 144 ~LhN~~~~~~Dp~~l~~e~-v~ai~~kyGvs~~~~~~~~el~~lY~~~~~ 192 (1009)
.||+.|..++-+..|+.+. -..|+.++|+......-...|+.+|.+||.
T Consensus 40 ~Ly~~V~~~GG~~~V~~~~~W~~va~~lg~~~~~~~~~~~L~~~Y~~~L~ 89 (92)
T PF01388_consen 40 KLYKAVMKRGGFDKVTKNKKWREVARKLGFPPSSTSAAQQLRQHYEKYLL 89 (92)
T ss_dssp HHHHHHHHHTSHHHHHHHTTHHHHHHHTTS-TTSCHHHHHHHHHHHHHTH
T ss_pred HHHHHHHhCcCcccCcccchHHHHHHHhCCCCCCCcHHHHHHHHHHHHhH
Confidence 5788888887777777664 899999999987643335689999999985
No 43
>PRK13731 conjugal transfer surface exclusion protein TraT; Provisional
Probab=34.61 E-value=23 Score=39.27 Aligned_cols=7 Identities=29% Similarity=0.714 Sum_probs=3.5
Q ss_pred CCCCCCC
Q 001818 20 PFLNPSP 26 (1009)
Q Consensus 20 ~~~~~~~ 26 (1009)
-||.|.+
T Consensus 43 IfLdP~~ 49 (243)
T PRK13731 43 IWLEPAS 49 (243)
T ss_pred EEEcCCC
Confidence 3555533
No 44
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=34.40 E-value=4e+02 Score=28.57 Aligned_cols=131 Identities=26% Similarity=0.361 Sum_probs=85.9
Q ss_pred HHhhhhhhcccC----CChHHHHHHHHhHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHH--
Q 001818 746 YVLLSQLGGILG----LTTKEIVDVHRGLAEQAFRQQAEVILADGQLTKARIEQLNEVQKQVGLPSEYAQKIIKNITT-- 819 (1009)
Q Consensus 746 f~~LnQLg~ILG----L~~kEi~~VH~~laeqAyrqqaeqiL~dG~Lt~akae~L~eiq~qLgLp~e~AqKiIk~it~-- 819 (1009)
+.++.++..--| ++..||..+|. .|++..... .+|.+|+++-..+-++ ..+ -.++-||+-+-+
T Consensus 11 ~~~~~~~~~~~~~~~~fs~~EI~~L~~-----rF~kl~~~~-~~g~lt~eef~~i~~~----~~N-p~~~rI~~~f~~~~ 79 (187)
T KOG0034|consen 11 DEDLEELQMYTGDPTQFSANEIERLYE-----RFKKLDRNN-GDGYLTKEEFLSIPEL----ALN-PLADRIIDRFDTDG 79 (187)
T ss_pred hhhhHHHHhccCCCcccCHHHHHHHHH-----HHHHhcccc-ccCccCHHHHHHHHHH----hcC-cHHHHHHHHHhccC
Confidence 344555555556 78899999985 688888777 9999999877666632 222 245556655542
Q ss_pred ------------------------HHHHH--HHHHHHHcCCCCHHHHHHHHHcccch-hhhccHHHHHHHHHHHHHHHHh
Q 001818 820 ------------------------TKMAA--AIETAVAQGKLNIKQIRELKEASVDL-DNMISESLRENLFKKTVDEIFS 872 (1009)
Q Consensus 820 ------------------------~Kms~--~ie~~va~GkL~~~~V~eLke~gV~L-~~~ised~R~~LFrK~V~e~is 872 (1009)
+||.= -+=..=-+|.+|-+++..+.+.=|.. +++ +.++|+.+=.+++.++=.
T Consensus 80 ~~~~v~F~~Fv~~ls~f~~~~~~~~Kl~faF~vYD~~~~G~I~reel~~iv~~~~~~~~~~-~~e~~~~i~d~t~~e~D~ 158 (187)
T KOG0034|consen 80 NGDPVDFEEFVRLLSVFSPKASKREKLRFAFRVYDLDGDGFISREELKQILRMMVGENDDM-SDEQLEDIVDKTFEEADT 158 (187)
T ss_pred CCCccCHHHHHHHHhhhcCCccHHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHccCCcc-hHHHHHHHHHHHHHHhCC
Confidence 24422 11112247899999999888654443 333 899999999999988876
Q ss_pred cCCCCCchH---HHHHhcc
Q 001818 873 SGTGEFDAE---EVYEKIP 888 (1009)
Q Consensus 873 sGtg~fD~e---e~~~kip 888 (1009)
+|-|--+.+ .++++-|
T Consensus 159 d~DG~IsfeEf~~~v~~~P 177 (187)
T KOG0034|consen 159 DGDGKISFEEFCKVVEKQP 177 (187)
T ss_pred CCCCcCcHHHHHHHHHcCc
Confidence 655554555 5555544
No 45
>cd07178 terB_like_YebE tellurium resistance terB-like protein, subgroup 3. This family includes several uncharacterized bacterial proteins including an Escherichia coli protein called YebE. Protein sequence homology analysis shows they are similar to tellurium resistance protein terB, but the function of this family is unknown.
Probab=33.99 E-value=4.2e+02 Score=25.22 Aligned_cols=94 Identities=20% Similarity=0.174 Sum_probs=63.5
Q ss_pred HHHHHHhccCCCCCccchHHHHHHHHHHHhCCCcchhhHHHHHHhhHHHHHHHHhhhcCCcccccCChhHHHHhhhhhcc
Q 001818 420 LYRAYVTDSLSGGRMEESKLAALNQLRNIFGLGKRESEAIIVDVTSKVYRKRLGQAVSGGALEAADSKASFLQSLCEELH 499 (1009)
Q Consensus 420 LYraYL~e~Ls~G~l~~~~~~~L~~LknifGLg~~EAe~I~~dV~~kiYR~rL~~~v~sg~le~a~SkA~~LQ~lc~~L~ 499 (1009)
|-++-+.=+-++|+++.++...|.++-.-+|++. -.+..+...+ ...-++. .|+..++
T Consensus 2 ~lrami~aAkADG~id~~E~~~I~~~~~~~~~~~---------~~~~~~~~~l---------~~p~~~~----~la~~~~ 59 (95)
T cd07178 2 LLRAMIAAAKADGHIDEAERARILGELGEAGLDA---------EERAFLEAEL---------AAPLDPD----ALAAAVP 59 (95)
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCCH---------HHHHHHHHHH---------HCCCCHH----HHHHHcC
Confidence 4566677777999999999999999999999983 2244444444 2222222 4555555
Q ss_pred CChhhHHHHHHHHHHHHHHHHhhcCCCChHhHHHHHhhHHhhcc
Q 001818 500 FDPQKASEIHEEIYRQKLQQCVADGELNDEDVAALLRLRVMLCV 543 (1009)
Q Consensus 500 Fdpe~A~~iheeIYr~kL~q~Vsd~~ltdedv~aLlr~R~~LcI 543 (1009)
=+ +.|.++ |+ -+++.-+..|..+-++|..|..-|++
T Consensus 60 ~~-~~a~~~----y~---~s~~~~d~~s~aE~~~L~~la~aLgl 95 (95)
T cd07178 60 DP-ELAAEV----YA---ASLLAIDPDTFAERAYLDELAAALGL 95 (95)
T ss_pred CH-HHHHHH----HH---HHHHHHcCCCHHHHHHHHHHHHHhCc
Confidence 44 555555 73 33343239999999999999988875
No 46
>PF13436 Gly-zipper_OmpA: Glycine-zipper containing OmpA-like membrane domain
Probab=33.74 E-value=47 Score=32.79 Aligned_cols=21 Identities=48% Similarity=0.779 Sum_probs=11.7
Q ss_pred hhhccccccCCCCchhHHHHH
Q 001818 99 AGFKLGSKYGGGSRNVAIGGA 119 (1009)
Q Consensus 99 ~G~~~G~~~~~~~r~aa~~ga 119 (1009)
+|.++|...|++.+.+++|++
T Consensus 62 ~GA~~Ga~~G~~~~ga~~GAa 82 (118)
T PF13436_consen 62 AGAAIGAIIGGNGRGAAIGAA 82 (118)
T ss_pred HHHHHHhhcCCCccchHHHHH
Confidence 566677777443455554443
No 47
>COG3413 Predicted DNA binding protein [General function prediction only]
Probab=33.74 E-value=77 Score=33.54 Aligned_cols=51 Identities=18% Similarity=0.310 Sum_probs=44.8
Q ss_pred HHHHHHHhcCCCCCChHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHH
Q 001818 562 KVVKDAISSGVEGYDGEVKKAVRKAAHGLRLTREAAMSIASKAVRRIFVIYIK 614 (1009)
Q Consensus 562 k~Vk~Ai~aG~dg~~~~~~~~vrkA~~~LRLsde~A~eI~~~avRk~f~~yI~ 614 (1009)
++++.|+..|.--+.. +..++..++.+=+|.-+..+.++++.+|.+.+|+.
T Consensus 162 ~vL~~A~~~GYFd~PR--~~~l~dLA~~lGISkst~~ehLRrAe~Kl~~~~~~ 212 (215)
T COG3413 162 EVLRLAYKMGYFDYPR--RVSLKDLAKELGISKSTLSEHLRRAERKLIEAYFD 212 (215)
T ss_pred HHHHHHHHcCCCCCCc--cCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhh
Confidence 4577889998774444 89999999999999999999999999999999875
No 48
>KOG4675 consensus Uncharacterized conserved protein, contains ENT domain [General function prediction only]
Probab=32.19 E-value=3.2e+02 Score=31.19 Aligned_cols=77 Identities=14% Similarity=0.218 Sum_probs=59.2
Q ss_pred HhHHHHHHHHHHHHHhhcCC-CCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Q 001818 768 RGLAEQAFRQQAEVILADGQ-LTKARIEQLNEVQKQVGLPSEYAQKIIKNITTTKMAAAIETAVAQGKLNIKQIRELK 844 (1009)
Q Consensus 768 ~~laeqAyrqqaeqiL~dG~-Lt~akae~L~eiq~qLgLp~e~AqKiIk~it~~Kms~~ie~~va~GkL~~~~V~eLk 844 (1009)
.-|=.-||+.-+...-+.|. ++.++.+-|.||+++|..+.+.=+..++.+-..-|..-|-.=...+-.+.+.+.+.+
T Consensus 13 ~~le~eaY~~vl~af~aq~d~iS~ek~~~~teLrk~l~Is~eeh~~~~r~~~~d~~~~~i~~n~~~~n~~qe~~~e~~ 90 (273)
T KOG4675|consen 13 HRLELEAYASVLRAFKAQGDAISWEKEELLTELRKELNISDEEHRMLVRRAINDDLITRIRENSRGSNKSQEWSGEGR 90 (273)
T ss_pred HHHHHHHHHHHHHHHHhcCcccchhHHHHHHHHhhhhccCHHHHHHHHHHHhccHHHHHHHHhhcCCCchhhhhhhhh
Confidence 34566799999999999999 999999999999999999999999999988876665533322233444445555444
No 49
>cd07178 terB_like_YebE tellurium resistance terB-like protein, subgroup 3. This family includes several uncharacterized bacterial proteins including an Escherichia coli protein called YebE. Protein sequence homology analysis shows they are similar to tellurium resistance protein terB, but the function of this family is unknown.
Probab=31.94 E-value=3e+02 Score=26.19 Aligned_cols=92 Identities=16% Similarity=0.268 Sum_probs=60.3
Q ss_pred HHHHHHHhhcCCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHcccchhhhcc
Q 001818 776 RQQAEVILADGQLTKARIEQLNEVQKQVGLPSEYAQKIIKNITTTKMAAAIETAVAQGKLNIKQIRELKEASVDLDNMIS 855 (1009)
Q Consensus 776 rqqaeqiL~dG~Lt~akae~L~eiq~qLgLp~e~AqKiIk~it~~Kms~~ie~~va~GkL~~~~V~eLke~gV~L~~~is 855 (1009)
|....-.-+||..+++..+.+..+=+.+|++.+.- .+++.. +.. .++++++..- .=+
T Consensus 4 rami~aAkADG~id~~E~~~I~~~~~~~~~~~~~~-~~~~~~------------l~~-p~~~~~la~~---------~~~ 60 (95)
T cd07178 4 RAMIAAAKADGHIDEAERARILGELGEAGLDAEER-AFLEAE------------LAA-PLDPDALAAA---------VPD 60 (95)
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHhCCCHHHH-HHHHHH------------HHC-CCCHHHHHHH---------cCC
Confidence 44556677999999999999999999999996433 332222 222 2233322111 223
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCchHHHHHhcccccCC
Q 001818 856 ESLRENLFKKTVDEIFSSGTGEFDAEEVYEKIPADLSI 893 (1009)
Q Consensus 856 ed~R~~LFrK~V~e~issGtg~fD~ee~~~kip~dL~I 893 (1009)
..++.++|.-.+-=+ |..++-+.++.+.+...|+|
T Consensus 61 ~~~a~~~y~~s~~~~---d~~s~aE~~~L~~la~aLgl 95 (95)
T cd07178 61 PELAAEVYAASLLAI---DPDTFAERAYLDELAAALGL 95 (95)
T ss_pred HHHHHHHHHHHHHHH---cCCCHHHHHHHHHHHHHhCc
Confidence 367777887666544 46666677999999888875
No 50
>PF10785 NADH-u_ox-rdase: NADH-ubiquinone oxidoreductase complex I, 21 kDa subunit; InterPro: IPR019721 This domain is found in the N-terminal region of NADH-ubiquinone oxidoreductase 21kDa subunits from plants and fungi [].
Probab=31.13 E-value=90 Score=29.52 Aligned_cols=63 Identities=19% Similarity=0.147 Sum_probs=42.4
Q ss_pred hhhhhhcCCchhhhhHHHHHHHHhhhhhhccccccCCCCc---hhHHHHHHHHhhhhhHHHHHhhhc
Q 001818 73 IQPVVDKLSPPVRLATSAVVIAGAVFAGFKLGSKYGGGSR---NVAIGGAAILGAAGGAMAYAMNAA 136 (1009)
Q Consensus 73 ~~~~~~~l~~~~r~~~~~~vva~a~a~G~~~G~~~~~~~r---~aa~~gaav~gaa~~a~a~~~ns~ 136 (1009)
....+... -|.=|+..+++.|+...+||..|...+.... ..+...+..+|..||+..+-.||+
T Consensus 13 f~rVv~~~-R~sDy~~~a~~ta~~p~~~~~~~~~~~~~~~~~~~~~~~~a~~ig~~gGfl~ayqrS~ 78 (86)
T PF10785_consen 13 FKRVVRYF-RPSDYAIWAGATAASPPLGYYMERSAPSRVGRGGGPAMRLAGAIGFFGGFLLAYQRSS 78 (86)
T ss_pred HHHHHHhC-CHHHHHHHHHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHhh
Confidence 44455555 5566788888888888999998887642222 445555666677777777766764
No 51
>PRK13731 conjugal transfer surface exclusion protein TraT; Provisional
Probab=30.36 E-value=46 Score=37.00 Aligned_cols=8 Identities=38% Similarity=0.808 Sum_probs=3.4
Q ss_pred ccCCChhh
Q 001818 68 KELQGIQP 75 (1009)
Q Consensus 68 k~l~g~~~ 75 (1009)
+++.++|+
T Consensus 63 ~~~~~l~~ 70 (243)
T PRK13731 63 KDMSGLQG 70 (243)
T ss_pred cchHHHHH
Confidence 34444443
No 52
>KOG3324 consensus Mitochondrial import inner membrane translocase, subunit TIM23 [Intracellular trafficking, secretion, and vesicular transport]
Probab=29.32 E-value=45 Score=36.20 Aligned_cols=37 Identities=32% Similarity=0.244 Sum_probs=26.9
Q ss_pred hhhhhhcccccc--CCCCchhHHHHHHHHhhhhhHHHHH
Q 001818 96 AVFAGFKLGSKY--GGGSRNVAIGGAAILGAAGGAMAYA 132 (1009)
Q Consensus 96 a~a~G~~~G~~~--~~~~r~aa~~gaav~gaa~~a~a~~ 132 (1009)
.++||..-|.-+ .+|-|.++++++.+++||++++.+-
T Consensus 158 sv~AGalTGalyrs~~Glr~~av~ga~g~~aa~aw~l~k 196 (206)
T KOG3324|consen 158 SVAAGALTGALYRSTRGLRAAAVAGAVGGTAAAAWTLGK 196 (206)
T ss_pred hhhhhhhhhhhhhcCCCchHHHHHHHHHHHHHHHHHHhh
Confidence 345555555544 6788999999999998888877654
No 53
>cd00076 H4 Histone H4, one of the four histones, along with H2A, H2B and H3, which forms the eukaryotic nucleosome core; along with H3, it plays a central role in nucleosome formation; histones bind to DNA and wrap the genetic material into "beads on a string" in which DNA (the string) is wrapped around small blobs of histones (the beads) at regular intervals; play a role in the inheritance of specialized chromosome structures and the control of gene activity; defects in the establishment of proper chromosome structure by histones may activate or silence genes aberrantly and thus lead to disease; the sequence of histone H4 has remained almost invariant in more than 2 billion years of evolution
Probab=28.68 E-value=89 Score=29.73 Aligned_cols=46 Identities=17% Similarity=0.371 Sum_probs=39.2
Q ss_pred HhhhhhcCCCCCCCCCHHHHHHHHHhhcccchhhhhhHHHHHHHHHHhhccc
Q 001818 144 RLHDYVTDCNDPGAVKREDIEAIASKYGVSKQDEAFNAELSEIYCRFVTSVL 195 (1009)
Q Consensus 144 ~LhN~~~~~~Dp~~l~~e~v~ai~~kyGvs~~~~~~~~el~~lY~~~~~svi 195 (1009)
.|+++..| +|+.-|.-|+.+-|+..-....-.|+++....|++.|+
T Consensus 6 ~~~~~~~g------i~k~~I~RLarr~GvkRIS~d~y~e~~~~l~~~l~~I~ 51 (85)
T cd00076 6 VLRDNIKG------ITKPAIRRLARRGGVKRISGGVYDEVRNVLKSYLEDVI 51 (85)
T ss_pred HHHHhhcc------CCHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHHHHHH
Confidence 34555555 78999999999999999987777899999999999876
No 54
>PF12949 HeH: HeH/LEM domain; PDB: 2OUT_A.
Probab=28.53 E-value=50 Score=26.81 Aligned_cols=34 Identities=21% Similarity=0.363 Sum_probs=23.9
Q ss_pred CCCCCHHHHHHHHHhhcccchhhhhhHHHHHHHH
Q 001818 155 PGAVKREDIEAIASKYGVSKQDEAFNAELSEIYC 188 (1009)
Q Consensus 155 p~~l~~e~v~ai~~kyGvs~~~~~~~~el~~lY~ 188 (1009)
|.+||=.++-.|...+||.....+=++||.+|+.
T Consensus 1 p~sltV~~Lk~iL~~~~I~~ps~AkKaeLv~L~~ 34 (35)
T PF12949_consen 1 PKSLTVAQLKRILDEHGIEFPSNAKKAELVALFN 34 (35)
T ss_dssp STT--SHHHHHHHHHHT---SSS--SHHHHHH--
T ss_pred CCcCcHHHHHHHHHHcCCCCCCCCCHHHHHHHHc
Confidence 7899999999999999999999999999999874
No 55
>PLN03094 Substrate binding subunit of ER-derived-lipid transporter; Provisional
Probab=27.56 E-value=94 Score=36.46 Aligned_cols=35 Identities=34% Similarity=0.526 Sum_probs=15.9
Q ss_pred CCCcccCCCCCCCCCCCCCCCCCCCCccccceeccccccCcc
Q 001818 3 NSSLLTTPTSNRPLLFSPFLNPSPLPKRRRFKVSFPRNRSAA 44 (1009)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 44 (1009)
|+....++++++..+ ||+.|-| |-|....||.+..
T Consensus 4 ~~~~~~~~~~~~~~~--~~~~~~~-----~~~~~~~~~~~~~ 38 (370)
T PLN03094 4 SSSMISSLPSSSNGL--PFLPPKP-----QTRLLLVRAMSNA 38 (370)
T ss_pred cccccccCCCCCCCC--CCCCCch-----HHHHHHHHHhccc
Confidence 344444454444433 6664433 3333444565433
No 56
>PF14620 YPEB: YpeB sporulation
Probab=27.54 E-value=1e+03 Score=27.89 Aligned_cols=136 Identities=17% Similarity=0.283 Sum_probs=81.4
Q ss_pred ccCCChHHHHHHHHhHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 001818 755 ILGLTTKEIVDVHRGLAEQAFRQQAEVILADGQLTKARIEQLNEVQKQVGLPSEYAQKIIKNITTTKMAAAIETAVAQGK 834 (1009)
Q Consensus 755 ILGL~~kEi~~VH~~laeqAyrqqaeqiL~dG~Lt~akae~L~eiq~qLgLp~e~AqKiIk~it~~Kms~~ie~~va~Gk 834 (1009)
+=.+.-..++..-+.+++-+|+ .+...+....||+++.+.|.+|.++. ..|=++ ...++.-|.+|+
T Consensus 80 l~~~~~~~t~~FLsqvGdfsy~-la~~~~~g~~Lt~~e~~tL~~L~~~s-------~~l~~~------L~~~~~~v~~~~ 145 (361)
T PF14620_consen 80 LSQMPFNKTEKFLSQVGDFSYS-LAVRDLDGEPLTDEEYKTLKELYEQS-------GELNKE------LQDVQNKVLSGN 145 (361)
T ss_pred CCCcchhHHHHHHHHHHHHHHH-HHHhhcCCCCCCHHHHHHHHHHHHHH-------HHHHHH------HHHHHHHHHhCC
Confidence 3334445566666777777764 56666666679999999999998764 333222 235566889999
Q ss_pred CCHHHHHHHHHcccchhhhccHHHHHHHHHHHHHHHHhc-C----CCCCchHHHHHhccccc---CCCHHHHHHHHHHHH
Q 001818 835 LNIKQIRELKEASVDLDNMISESLRENLFKKTVDEIFSS-G----TGEFDAEEVYEKIPADL---SINAEKARRVVHELA 906 (1009)
Q Consensus 835 L~~~~V~eLke~gV~L~~~ised~R~~LFrK~V~e~iss-G----tg~fD~ee~~~kip~dL---~I~~ekAk~Iv~~~a 906 (1009)
|.-.+|+.=... .....-..-+.++ | +.|++-+.. . .|.| .+.+-++-|..| .|+.+.|+.|+.+..
T Consensus 146 l~w~d~~~~~~~--~~~~~~~~~i~~~-f-~~v~~~~~~yp~l~ydGpf-sd~~~~~~p~~l~g~~Is~eeA~~iak~fl 220 (361)
T PF14620_consen 146 LRWMDVEKALAS--ELQPQDNTIIDGG-F-KTVEKQVQGYPELIYDGPF-SDHLEKRTPKGLSGKEISKEEAKQIAKKFL 220 (361)
T ss_pred CchHHHHHhhhh--ccccCCCcccccH-H-HHHHHhhccCCCcccCCcc-hhhhhhcccccCCCCCcCHHHHHHHHHHHh
Confidence 998886533221 2211111111111 1 344444422 1 2555 456667777655 589999999888776
Q ss_pred HHH
Q 001818 907 RNR 909 (1009)
Q Consensus 907 ~~R 909 (1009)
...
T Consensus 221 ~~~ 223 (361)
T PF14620_consen 221 GKP 223 (361)
T ss_pred CCC
Confidence 654
No 57
>PRK01294 lipase chaperone; Provisional
Probab=26.91 E-value=97 Score=35.74 Aligned_cols=57 Identities=14% Similarity=0.269 Sum_probs=27.7
Q ss_pred hhccchhhhhHhhhhhcCCCCCCCCCHHHHHHHHHhhcccchhhhhhHHHHHHHHHHhh
Q 001818 134 NAAVPEVAAKRLHDYVTDCNDPGAVKREDIEAIASKYGVSKQDEAFNAELSEIYCRFVT 192 (1009)
Q Consensus 134 ns~~p~vA~~~LhN~~~~~~Dp~~l~~e~v~ai~~kyGvs~~~~~~~~el~~lY~~~~~ 192 (1009)
+.-+.+.+...+++|...- -...+.++|.+--..|=-..-++.-.+++-++|.+|+.
T Consensus 80 g~li~~~~~Rd~FDYfLs~--~gE~~l~~i~~~v~~~i~~~l~~~a~~~a~~l~~rY~~ 136 (336)
T PRK01294 80 GHLADTRALRDFFDYFLSA--LGELDLAAIDALVEREIAAQLPEPADSQALDLWLRYKA 136 (336)
T ss_pred CCeeccHHHHHHHHHHhhc--cCCCCHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHHH
Confidence 3344555666666665542 12234444444444432222223334566667777754
No 58
>PRK00143 mnmA tRNA-specific 2-thiouridylase MnmA; Reviewed
Probab=26.83 E-value=31 Score=39.39 Aligned_cols=41 Identities=20% Similarity=0.386 Sum_probs=36.2
Q ss_pred CCCHHHHHHHHHhhcccchhhhhhHHHHHH----HHHHhhcccCC
Q 001818 157 AVKREDIEAIASKYGVSKQDEAFNAELSEI----YCRFVTSVLPP 197 (1009)
Q Consensus 157 ~l~~e~v~ai~~kyGvs~~~~~~~~el~~l----Y~~~~~sviP~ 197 (1009)
.++|+||..+|..+|+...++.++.++|=+ |..||...+|+
T Consensus 165 ~~~K~eVr~~A~~~gl~~~~k~~s~~icf~~~~~~~~fl~~~~~~ 209 (346)
T PRK00143 165 ELTKPEVREIAEEAGLPVAKKKDSQGICFIGERDYRDFLKRYLPA 209 (346)
T ss_pred cCCHHHHHHHHHHcCCCcCCCCCCCcccCCCchhHHHHHHHhccc
Confidence 389999999999999999888899888854 88899998874
No 59
>PRK13676 hypothetical protein; Provisional
Probab=25.63 E-value=6.2e+02 Score=24.47 Aligned_cols=88 Identities=11% Similarity=0.142 Sum_probs=58.7
Q ss_pred chHHHhhhhhhcccCCChHHHHHHHHhHHHHHHHHHHHHHhhcCC-CCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHH
Q 001818 743 DSEYVLLSQLGGILGLTTKEIVDVHRGLAEQAFRQQAEVILADGQ-LTKARIEQLNEVQKQVGLPSEYAQKIIKNITTTK 821 (1009)
Q Consensus 743 qsEf~~LnQLg~ILGL~~kEi~~VH~~laeqAyrqqaeqiL~dG~-Lt~akae~L~eiq~qLgLp~e~AqKiIk~it~~K 821 (1009)
..||.++..-...+ ....|....-.+. +.-+.+++.....|+ .+++....|+++..++..+|.-..=+-....-++
T Consensus 19 s~ey~~~~~A~~~l-~~d~~a~~li~~F--~~~q~~~~~~q~~g~~~~~e~~~~l~~l~~~i~~n~~i~~y~~Ae~~l~~ 95 (114)
T PRK13676 19 LPEYKALKEAKEAV-KADEEAKKLFDEF--RALQLEIQQKQMTGQEITEEEQQKAQELGQKIQQNELLSKLMEAEQRLSV 95 (114)
T ss_pred CHHHHHHHHHHHHH-HcCHHHHHHHHHH--HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 45566665554444 2333444444444 223344455556666 8899999999999999999988777777777788
Q ss_pred HHHHHHHHHHcC
Q 001818 822 MAAAIETAVAQG 833 (1009)
Q Consensus 822 ms~~ie~~va~G 833 (1009)
|.+-|...|+.+
T Consensus 96 ll~~v~~iI~~~ 107 (114)
T PRK13676 96 YINDINKIIFKP 107 (114)
T ss_pred HHHHHHHHHHHH
Confidence 877777777665
No 60
>KOG3811 consensus Transcription factor AP-2 [Transcription]
Probab=25.46 E-value=1.8e+02 Score=34.94 Aligned_cols=80 Identities=29% Similarity=0.427 Sum_probs=48.3
Q ss_pred HHHHhhHHHHHHHHhhhcCCCCChHH-----------HHHHHHHHhhccC---------ChHHHHHHHHHHHHHHHHHHH
Q 001818 289 IAIRDNAKRLYASKLKSVGRDVDAEH-----------IVRLREEQLSYRL---------SDALAEDLFREHTRKLVEENI 348 (1009)
Q Consensus 289 ~a~rdnA~~l~~~~l~s~g~~l~~~~-----------l~~lr~~q~~~~L---------sDe~a~e~fr~~a~k~ve~~i 348 (1009)
-|.-.|+-++.+.+|+.+|-.|.+++ |+|--..-++--| .+++|++|.|+|.- -+.+.
T Consensus 250 RaKsKnGGr~lRe~L~k~GlnlpagrRkaAnVT~ltsLVE~EAvHLArDf~~vcE~efP~~~Iae~l~r~~l~--~~~~~ 327 (434)
T KOG3811|consen 250 RAKSKNGGRLLREKLTKIGLNLPAGRRKAANVTLLTSLVEEEAVHLARDFGYVCETEFPARAIAEELLRKHLA--PENDL 327 (434)
T ss_pred hhhhcchHHHHHHHHHHcCCCCcccchhhccchhhhHHHHHHHHHHHHhhhhhhhhhccHHHHHHHHHHHhhc--CchhH
Confidence 35667999999999999999999886 3333333322211 23344443333321 01244
Q ss_pred HHHHHHhhhccccccchhHHHHHHHHHHH
Q 001818 349 VTALSILKSRTRVVKGVAQVVEELDKVLA 377 (1009)
Q Consensus 349 s~al~~lk~rt~~~~~~~~~v~el~~vLa 377 (1009)
-....++|.-+ ++|+|+.++|.
T Consensus 328 ~~rk~ml~~t~-------q~~ke~~~lLs 349 (434)
T KOG3811|consen 328 DDRKNMLLATT-------QICKELTDLLS 349 (434)
T ss_pred HHHHHHHHHHH-------HHHHHHHHHHh
Confidence 45555555544 99999999884
No 61
>TIGR00470 sepS O-phosphoseryl-tRNA(Cys) synthetase. This family of archaeal proteins resembles known phenylalanyl-tRNA synthetase alpha chains. Recently, it was shown to act in a proposed pathway of tRNA(Cys) indirect aminoacylation, resulting in Cys biosynthesis from O-phosphoserine, in certain archaea. It charges tRNA(Cys) with O-phosphoserine. The pscS gene product converts the phosphoserine to Cys.
Probab=24.47 E-value=1.6e+02 Score=36.21 Aligned_cols=94 Identities=19% Similarity=0.316 Sum_probs=63.9
Q ss_pred CCHHHHHHHHHcccchhhhccHHHHHHHHHHHHHHHHhcCCCCCchHHHHHhcccccCCCHHHHHHHHHHHHHHHHHHHH
Q 001818 835 LNIKQIRELKEASVDLDNMISESLRENLFKKTVDEIFSSGTGEFDAEEVYEKIPADLSINAEKARRVVHELARNRLSNSL 914 (1009)
Q Consensus 835 L~~~~V~eLke~gV~L~~~ised~R~~LFrK~V~e~issGtg~fD~ee~~~kip~dL~I~~ekAk~Iv~~~a~~R~~n~L 914 (1009)
|+.+++..+.++|.++++.=-+.+|+-| +..-.|+ .|-++++-+|...|+++...+-+|+.++--+=++=-=
T Consensus 107 is~~~~~~i~~~g~~~~~~~~e~lr~~l------h~ykkg~--idgddl~~eia~~l~~~d~~~~~ild~vfpefk~l~p 178 (533)
T TIGR00470 107 LGNEKIEIIENLGIDIDDEKKERLREVF------HLYKKGA--IDGDDLVFEIAKALNVSNEMGLKVLETVFPEFKDLKP 178 (533)
T ss_pred cCHHHHHHHHHhCCCCChhHHHHHHHHH------HHhhcCC--CccchhHHHHHHhhCCchHHHHHHHHHhChhhhhcCh
Confidence 5667777777777777655444555443 4455555 4899999999999999999999999776544333222
Q ss_pred HHHHHHHhhhchhhHHHHHHHH
Q 001818 915 IQAVSLLRQKNRQGVVSSLNDL 936 (1009)
Q Consensus 915 vQAVa~LRQr~~~evv~sL~nL 936 (1009)
+--..+||.--....+.+|.+|
T Consensus 179 ~s~~~lLRTHTTpgqirtL~~L 200 (533)
T TIGR00470 179 ESTTLTLRSHMTSGWFITLSSI 200 (533)
T ss_pred HhhCcccccCChhHHHHHHHHH
Confidence 3333466776667666666654
No 62
>TIGR02698 CopY_TcrY copper transport repressor, CopY/TcrY family. This family includes metal-fist type transcriptional repressors of copper transport systems such as copYZAB of Enterococcus hirae and tcrYAZB (transferble copper resistance) of an Enterocuccus faecium plasmid. High levels of copper can displace zinc and prevent binding by the repressor, activating efflux by copper resistance transporters. The most closely related proteins excluded by this model are antibiotic resistance regulators including the methicillin resistance regulatory protein MecI.
Probab=22.71 E-value=86 Score=31.21 Aligned_cols=99 Identities=16% Similarity=0.286 Sum_probs=59.8
Q ss_pred chHHHhhhhhhcccCCChHHHHHHHH---hHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhC--CChHH-----HHH
Q 001818 743 DSEYVLLSQLGGILGLTTKEIVDVHR---GLAEQAFRQQAEVILADGQLTKARIEQLNEVQKQVG--LPSEY-----AQK 812 (1009)
Q Consensus 743 qsEf~~LnQLg~ILGL~~kEi~~VH~---~laeqAyrqqaeqiL~dG~Lt~akae~L~eiq~qLg--Lp~e~-----AqK 812 (1009)
++|+.-+.-|-.-=+++.+||.+... +++-..-...+.....+|.++..+-. . .-... .+.+. .+.
T Consensus 4 ~~E~~VM~vlW~~~~~t~~eI~~~l~~~~~~~~tTv~T~L~rL~~KG~v~~~k~g---r-~~~Y~p~vs~ee~~~~~~~~ 79 (130)
T TIGR02698 4 DAEWEVMRVVWTLGETTSRDIIRILAEKKDWSDSTIKTLLGRLVDKGCLTTEKEG---R-KFIYTALVSEDEAVENAAQE 79 (130)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHhhccCCcHHHHHHHHHHHHHCCceeeecCC---C-cEEEEecCCHHHHHHHHHHH
Confidence 44544444442222457777777653 46666777788888889988733100 0 00000 12222 345
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 001818 813 IIKNITTTKMAAAIETAVAQGKLNIKQIRELKE 845 (1009)
Q Consensus 813 iIk~it~~Kms~~ie~~va~GkL~~~~V~eLke 845 (1009)
+++.+....+...+.+++...+||.+++.+|++
T Consensus 80 ~~~~~f~gs~~~ll~~l~~~~~ls~eele~L~~ 112 (130)
T TIGR02698 80 LFSRICSRKVGAVIADLIEESPLSQTDIEKLEK 112 (130)
T ss_pred HHHHHHCCCHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 566565566666777799999999999999985
No 63
>COG3133 SlyB Outer membrane lipoprotein [Cell envelope biogenesis, outer membrane]
Probab=22.63 E-value=61 Score=33.68 Aligned_cols=42 Identities=43% Similarity=0.685 Sum_probs=28.0
Q ss_pred HHhhhhhhccccccCCC--CchhHHHHHHHHhhhhhHHHHHhhhc
Q 001818 94 AGAVFAGFKLGSKYGGG--SRNVAIGGAAILGAAGGAMAYAMNAA 136 (1009)
Q Consensus 94 a~a~a~G~~~G~~~~~~--~r~aa~~gaav~gaa~~a~a~~~ns~ 136 (1009)
+|++-.|+ +|...||| +-.|+++||.+.|.||...--++|+.
T Consensus 66 gG~~lGG~-~g~~iGgG~G~~~At~~GAvAGgvaG~~ie~~~n~~ 109 (154)
T COG3133 66 GGAVLGGF-LGNTIGGGTGRSLATAAGAVAGGVAGQGIEEAMNKT 109 (154)
T ss_pred ccccccce-eeccccCCcchHHHHHHhHhhhhhhhhhhHhhhccC
Confidence 34433444 77776555 33777888888888888887777753
No 64
>PRK06253 O-phosphoseryl-tRNA synthetase; Reviewed
Probab=22.57 E-value=1.4e+02 Score=36.68 Aligned_cols=65 Identities=25% Similarity=0.415 Sum_probs=47.9
Q ss_pred CCHHHHHHHHH-cccchhhhccHHHHHHHHHHHHHHHHhcCCCCCchHHHHHhcccccCCCHHHHHHHHHHHHH
Q 001818 835 LNIKQIRELKE-ASVDLDNMISESLRENLFKKTVDEIFSSGTGEFDAEEVYEKIPADLSINAEKARRVVHELAR 907 (1009)
Q Consensus 835 L~~~~V~eLke-~gV~L~~~ised~R~~LFrK~V~e~issGtg~fD~ee~~~kip~dL~I~~ekAk~Iv~~~a~ 907 (1009)
++.++|..+.+ +|.++++.--+.+|+-| +..-.|+ .|-++++-+|...|+++...+-+|+.++--
T Consensus 107 ~~~~~~~~i~~~~~~~~~~~~~e~l~~~l------h~ykkg~--~~gddl~~e~~~~l~~~~~~~~~~l~~vfp 172 (529)
T PRK06253 107 ISDEKIEQIEEILGRDLSEEKIESLREVL------HSYKKGE--IDGDDLVLEISKALEVSDEMVLKILDEVFP 172 (529)
T ss_pred cCHHHHHHHHHHhCCCCChhHHHHHHHHH------HHhhcCC--CccchhHHHHHHhcCCChHHHHHHHHHhCh
Confidence 56666677776 77777655555555544 4455554 489999999999999999999999986543
No 65
>PRK01294 lipase chaperone; Provisional
Probab=22.49 E-value=1.3e+03 Score=26.98 Aligned_cols=94 Identities=13% Similarity=0.260 Sum_probs=62.7
Q ss_pred HHHHHHHHH---HHHhhcCCCCHH-HHHHHHHHHHHhCCChHHHHHHHHHHHH-HHHHHHHHHHHHcCCCCHHHHHHHHH
Q 001818 771 AEQAFRQQA---EVILADGQLTKA-RIEQLNEVQKQVGLPSEYAQKIIKNITT-TKMAAAIETAVAQGKLNIKQIRELKE 845 (1009)
Q Consensus 771 aeqAyrqqa---eqiL~dG~Lt~a-kae~L~eiq~qLgLp~e~AqKiIk~it~-~Kms~~ie~~va~GkL~~~~V~eLke 845 (1009)
.|..|++++ -.|..+..|+.+ |...|.++..|| |++. ..-|....+ +.+...+.. +...-.+.++++.++.
T Consensus 183 ~E~~~~~~aL~rl~I~~d~~Ls~~qK~~~l~~L~~qL--P~~~-~~~~~~~~~~~~l~~~~~~-l~~~g~s~~~~~~~r~ 258 (336)
T PRK01294 183 EENQYQRYALERLRIAQDPSLSDAQKAARLAALEAQL--PEDL-RAALQESQRQQALLQQLAQ-LQASGASPQELRLMRA 258 (336)
T ss_pred hHHHHHHHHHHHHHHhcCcCCCHHHHHHHHHHHHHhC--CHhh-HHHHHHHHHHHHHHHHHHH-HHhcCCCHHHHHHHHH
Confidence 367888888 788889999887 899999999985 6655 444444443 444443333 3456789999999997
Q ss_pred cccch---hhhccHHHHHHHHHHHHH
Q 001818 846 ASVDL---DNMISESLRENLFKKTVD 868 (1009)
Q Consensus 846 ~gV~L---~~~ised~R~~LFrK~V~ 868 (1009)
..|.- +.+...|+.+.-|+.-++
T Consensus 259 ~~vG~EaA~RL~~Ld~qr~~wq~r~~ 284 (336)
T PRK01294 259 QLVGPEAAQRLEQLDQQRAAWQQRYD 284 (336)
T ss_pred HhcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 76655 333445555555555444
No 66
>PF01031 Dynamin_M: Dynamin central region; InterPro: IPR000375 Dynamin is a microtubule-associated force-producing protein of 100 Kd which is involved in the production of microtubule bundles. At the N terminus of dynamin is a GTPase domain (see IPR001401 from INTERPRO), and at the C terminus is a PH domain (see IPR001849 from INTERPRO). Between these two domains lies a central region of unknown function, which this entry represents.; GO: 0005525 GTP binding; PDB: 3ZVR_A 2AKA_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D 1JWY_B 1JX2_B 3SZR_A ....
Probab=21.98 E-value=1.1e+03 Score=26.10 Aligned_cols=172 Identities=18% Similarity=0.219 Sum_probs=104.2
Q ss_pred HHhhhhhhcccCCChHHHHHHHHhHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHH
Q 001818 746 YVLLSQLGGILGLTTKEIVDVHRGLAEQAFRQQAEVILADGQLTKARIEQLNEVQKQVGLPSEYAQKIIKNITTTKMAAA 825 (1009)
Q Consensus 746 f~~LnQLg~ILGL~~kEi~~VH~~laeqAyrqqaeqiL~dG~Lt~akae~L~eiq~qLgLp~e~AqKiIk~it~~Kms~~ 825 (1009)
-..|..||+-..-+..+....-..+..+ |.+.....+ +|.-+.. . ..+.-..-.-|..+-..-....
T Consensus 93 ~~eL~~lG~~~~~~~~~~~~~l~~~~~~-f~~~~~~~i-~G~~~~~-~----------~~~~l~~~ari~~~f~~~~~~~ 159 (295)
T PF01031_consen 93 EKELKRLGPPRPETPEEQRAYLLQIISK-FSRIFKDAI-DGEYSDE-F----------STNELRGGARIRYIFNEWFDKF 159 (295)
T ss_dssp HHHHHTHHHCSSSCHHHHHHHHHHHHHH-HHHHHHHHH-TT------------------TTS--HHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCCCCHHHHHHHHHHHHHH-HHHHHHHHh-cCCcccc-c----------cccccchhhHHHHHHHhhhhhh
Confidence 5678888888888888888877777754 666677776 5554430 0 1111111122233333333333
Q ss_pred HHHHHHcCCCCHHHHHHHHH--cccchhhhccHHHHHHHHHHHHHHHHhcCCCCCchHHHHHhcccccCCCHHHHHHHHH
Q 001818 826 IETAVAQGKLNIKQIRELKE--ASVDLDNMISESLRENLFKKTVDEIFSSGTGEFDAEEVYEKIPADLSINAEKARRVVH 903 (1009)
Q Consensus 826 ie~~va~GkL~~~~V~eLke--~gV~L~~~ised~R~~LFrK~V~e~issGtg~fD~ee~~~kip~dL~I~~ekAk~Iv~ 903 (1009)
+++.-....++.++|+++.+ .|..+-..++...-+.|.++.|+.--.- ..+.++++- +....++.
T Consensus 160 ~~~~~~~~~~~~~eI~~~i~~~~G~elp~f~p~~afe~Li~~~i~~l~~P------a~~cv~~V~-------~~l~~i~~ 226 (295)
T PF01031_consen 160 LEKIDPFEDLSDEEIRTAIRNSRGRELPGFVPESAFESLIRKQIEKLEEP------ALQCVEEVH-------EELQRIVE 226 (295)
T ss_dssp HHHTSHHHHHHHHHHHHHHHH--S-SSS-SCCHHHHHHHHHHHHHTTHHH------HHHHHHHHH-------HHHHHHHH
T ss_pred hhhhccccchhHHHHHHHHHhhcccccccchhHHHHHHHHHHHHHHHHhH------HHHHHHHHH-------HHHHHHHH
Confidence 33333345578999999974 7999999999999999999998543221 123333332 12233333
Q ss_pred HHHHH------HHHHHHHHHHHHHhhhchhhHHHHHHHHhhcCccc
Q 001818 904 ELARN------RLSNSLIQAVSLLRQKNRQGVVSSLNDLLACDKAV 943 (1009)
Q Consensus 904 ~~a~~------R~~n~LvQAVa~LRQr~~~evv~sL~nLLac~~lv 943 (1009)
+++.. ++++.+..++..+-.+-...+...+++|+.+...-
T Consensus 227 ~~~~~~~~~fp~L~~~i~~~v~~~l~~~~~~a~~~i~~li~~E~~~ 272 (295)
T PF01031_consen 227 QVLEKEFERFPNLKEAIKEAVQQLLEECREPAKEMIENLIDMELSY 272 (295)
T ss_dssp HHHCHHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred hhcchhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 33322 56778888888888899999999999999988743
No 67
>cd03021 DsbA_GSTK DsbA family, Glutathione (GSH) S-transferase Kappa (GSTK) subfamily; GSTK is a member of the GST family of enzymes which catalyzes the transfer of the thiol of GSH to electrophilic substrates. It is specifically located in the mitochondria and peroxisomes, unlike other members of the canonical GST family, which are mainly cytosolic. The biological substrates of GSTK are not yet known. It is presumed to have a protective role during respiration when large amounts of reactive oxygen species are generated. GSTK has the same general fold as DsbA, consisting of a thioredoxin domain interrupted by an alpha-helical domain and its biological unit is a homodimer. GSTK is closely related to the bacterial enzyme, 2-hydroxychromene-2-carboxylate (HCCA) isomerase. It shows little sequence similarity to the other members of the GST family.
Probab=21.78 E-value=3.7e+02 Score=28.11 Aligned_cols=64 Identities=16% Similarity=0.165 Sum_probs=44.5
Q ss_pred hHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhCCChHHHHHHHHH----HHHHHHHHHHHHHHHcC
Q 001818 769 GLAEQAFRQQAEVILADGQLTKARIEQLNEVQKQVGLPSEYAQKIIKN----ITTTKMAAAIETAVAQG 833 (1009)
Q Consensus 769 ~laeqAyrqqaeqiL~dG~Lt~akae~L~eiq~qLgLp~e~AqKiIk~----it~~Kms~~ie~~va~G 833 (1009)
.+.+..|+.+-++....| -+....+.|.++...+||+.+.+..++.. -.+..+..+.+.+...|
T Consensus 109 ~~~~~l~~a~f~~g~~i~-~~~~l~~vL~~~a~~~Gld~~~~~~~l~~~~~~~~~~~l~~~~~~A~~~G 176 (209)
T cd03021 109 TALEALFREFWVRPWSLT-EPITESQSISVAADKLGGSAEQAEKLLKAASTPEVKNRLKENTDEALKYG 176 (209)
T ss_pred HHHHHHHHHHHHHhccCC-CchhhHHHHHHHHHHcCCCcccHHHHHHHccCHHHHHHHHHHHHHHHHcC
Confidence 356667777766666655 33446688999999999999999999853 44556666555555544
No 68
>KOG3816 consensus Cell differentiation regulator of the Headcase family [Signal transduction mechanisms]
Probab=21.47 E-value=25 Score=41.44 Aligned_cols=12 Identities=33% Similarity=0.249 Sum_probs=9.2
Q ss_pred CchhHHHHHHHH
Q 001818 204 GDEVDKIVQFKK 215 (1009)
Q Consensus 204 G~E~~~i~~Fk~ 215 (1009)
-||.--+++|+-
T Consensus 117 ~WEsSiL~~~~~ 128 (526)
T KOG3816|consen 117 EWESSILVQFNC 128 (526)
T ss_pred HHHHHHHHHHhc
Confidence 388888888873
No 69
>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=21.40 E-value=1.3e+02 Score=35.13 Aligned_cols=44 Identities=32% Similarity=0.492 Sum_probs=35.8
Q ss_pred HHHhhhhhccCChhhHHHHHHHHHHHHHHHHhhcCCCChHhHHHHHh
Q 001818 490 FLQSLCEELHFDPQKASEIHEEIYRQKLQQCVADGELNDEDVAALLR 536 (1009)
Q Consensus 490 ~LQ~lc~~L~Fdpe~A~~iheeIYr~kL~q~Vsd~~ltdedv~aLlr 536 (1009)
-+|+||+.|++-|--=.+++++..+..|. +.|.|+.+|.-.|..
T Consensus 366 dEq~LC~~l~i~PkpyL~LK~~~is~~l~---t~g~f~K~d~~~Lf~ 409 (432)
T COG5114 366 DEQRLCETLNISPKPYLELKKEVISCFLR---TRGEFTKEDFNRLFG 409 (432)
T ss_pred hHHHHHHHhCCCCccHHHHHHHHHHHHHH---hCCCccHHHHHHHhC
Confidence 47999999999999999999999865543 479999997654443
No 70
>PF13436 Gly-zipper_OmpA: Glycine-zipper containing OmpA-like membrane domain
Probab=21.31 E-value=1.7e+02 Score=28.97 Aligned_cols=33 Identities=33% Similarity=0.321 Sum_probs=18.9
Q ss_pred hhhhhccccccCCCCchhHHHHHHHHhhhhhHHH
Q 001818 97 VFAGFKLGSKYGGGSRNVAIGGAAILGAAGGAMA 130 (1009)
Q Consensus 97 ~a~G~~~G~~~~~~~r~aa~~gaav~gaa~~a~a 130 (1009)
+++|..+|... .|.-..|.+|+++.+++|+...
T Consensus 64 A~~Ga~~G~~~-~ga~~GAa~Ga~~G~~~g~~~~ 96 (118)
T PF13436_consen 64 AAIGAIIGGNG-RGAAIGAAAGAAVGAAAGAARG 96 (118)
T ss_pred HHHHhhcCCCc-cchHHHHHHHHHHHHHhhhhhh
Confidence 34566677743 3455666677777555554433
No 71
>PTZ00015 histone H4; Provisional
Probab=21.12 E-value=1.3e+02 Score=29.68 Aligned_cols=44 Identities=16% Similarity=0.306 Sum_probs=39.5
Q ss_pred CCCCCCCCHHHHHHHHHhhcccchhhhhhHHHHHHHHHHhhccc
Q 001818 152 CNDPGAVKREDIEAIASKYGVSKQDEAFNAELSEIYCRFVTSVL 195 (1009)
Q Consensus 152 ~~Dp~~l~~e~v~ai~~kyGvs~~~~~~~~el~~lY~~~~~svi 195 (1009)
+|.+..+|+.-|.-|+.+.||-.-....-.|++++...|+..|+
T Consensus 25 r~~i~gI~k~~IrRLarr~GvkRIS~d~y~e~r~vle~~l~~I~ 68 (102)
T PTZ00015 25 RDNIRGITKGAIRRLARRGGVKRISGDIYEEVRGVLKAFLENVV 68 (102)
T ss_pred hhcccCCCHHHHHHHHHHcCCccchHHHHHHHHHHHHHHHHHHH
Confidence 56777899999999999999999988887899999999999875
No 72
>PF09548 Spore_III_AB: Stage III sporulation protein AB (spore_III_AB); InterPro: IPR014198 This entry represents the stage III sporulation protein AB, which is encoded in a spore formation operon: spoIIIAABCDEFGH that is under sigma G regulation []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=21.11 E-value=3.2e+02 Score=28.31 Aligned_cols=58 Identities=19% Similarity=0.344 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhcCCCChHhHHHHHhhHHhhccchHHHHHHHHhhhhhhHHHHHHHH
Q 001818 510 EEIYRQKLQQCVADGELNDEDVAALLRLRVMLCVPQQTVEAAHSDICGSLFEKVVKDA 567 (1009)
Q Consensus 510 eeIYr~kL~q~Vsd~~ltdedv~aLlr~R~~LcIp~~~V~~ah~dicg~lf~k~Vk~A 567 (1009)
.+++++-+++...+..|+++|.+.|..+-+.||..+-.-|.-|-+.+..--+...++|
T Consensus 86 ~~~w~~~~~~~~~~~~L~~~d~e~L~~lg~~LG~~D~~~Q~k~i~l~~~~L~~~~~~a 143 (170)
T PF09548_consen 86 AEAWEEAVEKLLKESALKKEDKEILLELGKSLGYSDREMQEKHIELYLEQLEQQLEEA 143 (170)
T ss_pred HHHHHHHHHhhhhcCCCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHH
No 73
>PF11272 DUF3072: Protein of unknown function (DUF3072); InterPro: IPR021425 This bacterial family of proteins has no known function.
Probab=21.05 E-value=2.2e+02 Score=25.71 Aligned_cols=37 Identities=22% Similarity=0.344 Sum_probs=30.3
Q ss_pred hcCCCCHHHHHHHHHHHHHhC------CChHHHHHHHHHHHHH
Q 001818 784 ADGQLTKARIEQLNEVQKQVG------LPSEYAQKIIKNITTT 820 (1009)
Q Consensus 784 ~dG~Lt~akae~L~eiq~qLg------Lp~e~AqKiIk~it~~ 820 (1009)
+|.+.|.+.+++|..||++-| |+...|++.|..+..+
T Consensus 12 GDePmT~aQ~syL~tL~e~Age~~~~~LtkaeAs~rId~L~~~ 54 (57)
T PF11272_consen 12 GDEPMTGAQASYLKTLSEEAGEPFPDDLTKAEASERIDELQAQ 54 (57)
T ss_pred CCCCCcHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHHH
Confidence 566799999999999999986 6677888888877543
No 74
>PF05527 DUF758: Domain of unknown function (DUF758) ; InterPro: IPR008477 This is a family of eukaryotic proteins with unknown function, which are induced by tumour necrosis factor.; PDB: 3F4M_A.
Probab=20.77 E-value=2.2e+02 Score=30.82 Aligned_cols=98 Identities=18% Similarity=0.155 Sum_probs=47.4
Q ss_pred hHHHHHHHHHHHHHhhc----CCCCHHHHHHHHHHH---HHhCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHH
Q 001818 769 GLAEQAFRQQAEVILAD----GQLTKARIEQLNEVQ---KQVGLPSEYAQKIIKNITTTKMAAAIETAVAQGKLNIKQIR 841 (1009)
Q Consensus 769 ~laeqAyrqqaeqiL~d----G~Lt~akae~L~eiq---~qLgLp~e~AqKiIk~it~~Kms~~ie~~va~GkL~~~~V~ 841 (1009)
++|=+|=|+.++.+-++ -.++..=.+.|.++. ++.-=+.+.|+||+|+|-+.-+- +-=....+.+|.+|..
T Consensus 8 ~lalrAQKKilskmask~~ak~fIddtsselLD~ly~l~K~~t~~kkeA~ki~KniIKi~vK--igvl~rn~qf~~eEl~ 85 (186)
T PF05527_consen 8 SLALRAQKKILSKMASKSVAKMFIDDTSSELLDELYRLLKEYTGNKKEAEKIIKNIIKIVVK--IGVLYRNNQFSDEELA 85 (186)
T ss_dssp -------------------------HHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHH--HHHHHHTT---HHHHH
T ss_pred hHHHHHHHHHHHhhhhhhhhHHhcCchHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH--hheeeecCCCCHHHHH
Confidence 34444445555554333 336666666676665 44444899999999999885442 2227889999999987
Q ss_pred HHHHcccchhhhccHHHHHHHHHHHHHHHHhcCCCCCchH
Q 001818 842 ELKEASVDLDNMISESLRENLFKKTVDEIFSSGTGEFDAE 881 (1009)
Q Consensus 842 eLke~gV~L~~~ised~R~~LFrK~V~e~issGtg~fD~e 881 (1009)
-+.++. +=|+-..--++|=+..+|..+
T Consensus 86 ~~~~fr-------------~k~~~~amt~iSF~eV~fTfD 112 (186)
T PF05527_consen 86 LAEKFR-------------KKFHQLAMTAISFYEVDFTFD 112 (186)
T ss_dssp HHHHHH-------------HHHHHHHHHHHHHTSTTS---
T ss_pred HHHHHH-------------HHHHHHHHHHhhhcccchhhh
Confidence 765432 224445556777777777766
No 75
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=20.70 E-value=1.8e+03 Score=28.15 Aligned_cols=139 Identities=17% Similarity=0.251 Sum_probs=89.3
Q ss_pred cccCCCCCcchHHHHHHHHHHHHhccceeecc-ccccccccc-------cc-hHHHhhhhhhcccCCChHHHHHHHHhHH
Q 001818 701 INLKDDLPERDRTDLYKTYLLYCLTGEVTKIP-FGASITTKK-------DD-SEYVLLSQLGGILGLTTKEIVDVHRGLA 771 (1009)
Q Consensus 701 ItLkdDl~~rdr~dLYr~YL~~ClsGe~~~~p-~G~~i~~~k-------dq-sEf~~LnQLg~ILGL~~kEi~~VH~~la 771 (1009)
|+..+.++.-.-.+ .||++|+.+.=| +|-|+.+.. +. .-...|+ =|.|=|.+++-+..|-.-++
T Consensus 33 ~~v~G~~~~~~~g~------~~~~~G~~~~h~kyG~Qf~~~~~~~~~p~~~~~i~~yL~-s~~~~GIG~~~A~~iv~~fg 105 (720)
T TIGR01448 33 ATVVGVLPPLDEGD------TYTFEGQWEEHAKYGYQFRAERMELEAPTSKEGIVAYLS-SRSIKGVGKKLAQRIVKTFG 105 (720)
T ss_pred EEEEeecCCCCCCC------EEEEEEEEEECCCCCEEEEEEEEEEeCCCCHHHHHHHHh-cCCCCCcCHHHHHHHHHHhC
Confidence 66666666544433 358999987655 788885442 21 1245555 56689999999999988887
Q ss_pred HHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHcccchh
Q 001818 772 EQAFRQQAEVILADGQLTKARIEQLNEVQKQVGLPSEYAQKIIKNITTTKMAAAIETAVAQGKLNIKQIRELKEASVDLD 851 (1009)
Q Consensus 772 eqAyrqqaeqiL~dG~Lt~akae~L~eiq~qLgLp~e~AqKiIk~it~~Kms~~ie~~va~GkL~~~~V~eLke~gV~L~ 851 (1009)
+.++....+ + .+.|.++. |++++.+.+|.+++..++-...+-..+..--++......+.+.= -
T Consensus 106 ~~~~~~i~~----~-------~~~L~~v~---gi~~~~~~~i~~~~~~~~~~~~~~~~L~~~gi~~~~a~ki~~~y---g 168 (720)
T TIGR01448 106 EAAFDVLDD----D-------PEKLLEVP---GISKANLEKFVSQWSQQGDERRLLAGLQGLGIGIKLAQRIYKFY---Q 168 (720)
T ss_pred HhHHHHHHh----C-------HHHHhcCC---CCCHHHHHHHHHHHHHhHHHHHHHHHHHHcCCCHHHHHHHHHHH---h
Confidence 777654432 1 23344333 99999999999999887755555567777777777777665421 1
Q ss_pred hhccHHHHHHHH
Q 001818 852 NMISESLRENLF 863 (1009)
Q Consensus 852 ~~ised~R~~LF 863 (1009)
+..-+.+++|=|
T Consensus 169 ~~~~~~i~~nPY 180 (720)
T TIGR01448 169 ADTLDRVEKDPY 180 (720)
T ss_pred HHHHHHHHhCch
Confidence 223344555555
No 76
>PF11264 ThylakoidFormat: Thylakoid formation protein; InterPro: IPR017499 Psp29, originally designated sll1414 (P73956 from SWISSPROT) in Synechocystis sp. (strain PCC 6803), is found universally in Cyanobacteria and in Arabidopsis. It was isolated and partially sequenced from purified photosystem II (PS II) in Synechocystis. While its function is unknown, mutant studies show an impairment in photosystem II biogenesis and/or stability, rather than in PS II core function.; GO: 0010027 thylakoid membrane organization, 0015979 photosynthesis, 0009523 photosystem II
Probab=20.67 E-value=1.8e+02 Score=32.00 Aligned_cols=132 Identities=16% Similarity=0.234 Sum_probs=68.7
Q ss_pred cCCccceeeeccccCCCCcchHHHHHHHHHHhccCCCC-Cccch--HHH------HHHHHHHHhCCCcchhhHHHHHHhh
Q 001818 395 ARGVGPVSLVGGEFDGDRKMDDLKLLYRAYVTDSLSGG-RMEES--KLA------ALNQLRNIFGLGKRESEAIIVDVTS 465 (1009)
Q Consensus 395 ~~G~gpvsl~Gg~~d~d~k~dDLK~LYraYL~e~Ls~G-~l~~~--~~~------~L~~LknifGLg~~EAe~I~~dV~~ 465 (1009)
+-+||-||++--=.++=.--+|...||.+|....=-+- ++..+ .+. .+..+.+.+.-...+..+....+..
T Consensus 46 lfalG~vt~fd~fm~GY~p~~~~~~If~Alc~a~~~dp~~~r~dA~~l~~~a~~~s~~~l~~~l~~~~~~~~~~l~~~~~ 125 (216)
T PF11264_consen 46 LFALGLVTVFDRFMQGYPPEEDKDSIFNALCQALGFDPEQYRQDAEKLEEWAKGKSIEDLLSWLSQKGGEGDNPLAAILQ 125 (216)
T ss_pred hHHhhHHHHHHHHhcCCCChhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHhccccccchHHHHHHH
Confidence 45799999873333332244699999999998752111 11111 111 1122333332212233333333322
Q ss_pred H------HHHHH--------HHhhhcCCcccccCChhHHHHhhhhhccCChhhHHHHHHHHHHHHHHHHhhcCCCC
Q 001818 466 K------VYRKR--------LGQAVSGGALEAADSKASFLQSLCEELHFDPQKASEIHEEIYRQKLQQCVADGELN 527 (1009)
Q Consensus 466 k------iYR~r--------L~~~v~sg~le~a~SkA~~LQ~lc~~L~Fdpe~A~~iheeIYr~kL~q~Vsd~~lt 527 (1009)
. .+..| |-+..........+.....+.+||+.|+|++++... .=.+||..|+.+..-.++=
T Consensus 126 ~ia~~~~f~YSRl~AIGL~~LLe~a~~~~~~~~~~~~~~l~~l~~~l~ls~~kv~k-DL~lYrsnLeKm~qA~el~ 200 (216)
T PF11264_consen 126 AIASNPKFKYSRLFAIGLFRLLELAGADLVKDEEKRPEALEKLSEALGLSKEKVEK-DLDLYRSNLEKMAQAKELM 200 (216)
T ss_pred HHhcCCCCchHHHHHHHHHHHHHhcCcccccChhhHHHHHHHHHHHcCCCHHHHHh-hHHHHHhHHHHHHHHHHHH
Confidence 2 22222 223333322233334467999999999999988643 3357988887766544433
No 77
>COG2511 GatE Archaeal Glu-tRNAGln amidotransferase subunit E (contains GAD domain) [Translation, ribosomal structure and biogenesis]
Probab=20.66 E-value=1.4e+03 Score=28.95 Aligned_cols=111 Identities=21% Similarity=0.362 Sum_probs=61.1
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCCCH--------HHHHHHHHcccchhhhccHHHH--------H
Q 001818 797 NEVQKQVGLPSEYAQKIIKNITTTKMAAAIETAVAQGKLNI--------KQIRELKEASVDLDNMISESLR--------E 860 (1009)
Q Consensus 797 ~eiq~qLgLp~e~AqKiIk~it~~Kms~~ie~~va~GkL~~--------~~V~eLke~gV~L~~~ised~R--------~ 860 (1009)
..+.+.+||+.+-|.++++.-+-+..-. .++. .+.+ .=+.+|++-||++++.=....+ +
T Consensus 461 ~r~~~eygLs~~LA~~~~~~~~~~~FEe----l~e~-~v~p~~~A~~L~~~~~~L~reg~~i~~l~~~~i~~~~~~~~~g 535 (631)
T COG2511 461 ERYVKEYGLSKELAEQLASDPRVDLFEE----LVEK-GVDPTLIASTLVNTLPELRREGVEIDNLDDEHIEELLRLVSEG 535 (631)
T ss_pred HHHHHHhCCCHHHHHHHHhhhhHHHHHH----HHHc-CCCHHHHHHHHHHHHHHHHhcCCccccCCHHHHHHHHHHHhcc
Confidence 4456667777777777776655444433 3332 2222 2346777888888555333332 2
Q ss_pred HHHHHHHHHHHhcCC--CCCchHHHHHhcccccCCCHHHHHHHHHHHHHHHHHHH
Q 001818 861 NLFKKTVDEIFSSGT--GEFDAEEVYEKIPADLSINAEKARRVVHELARNRLSNS 913 (1009)
Q Consensus 861 ~LFrK~V~e~issGt--g~fD~ee~~~kip~dL~I~~ekAk~Iv~~~a~~R~~n~ 913 (1009)
++=|..|++++..=. .+-|.+++.+++-- ..++.|...+|+.+++++-....
T Consensus 536 ~iake~iee~l~~l~~~p~~~~~e~~~~~gL-~~ls~eEve~iI~eii~~~~d~i 589 (631)
T COG2511 536 KIAKEAIEEILKALAENPGKDAAEIAEKLGL-KELSEEEVEKIIDEIIESNLDVI 589 (631)
T ss_pred cchHHHHHHHHHHHHhCCCCCHHHHHHHhcc-ccCCHHHHHHHHHHHHHhhHHHH
Confidence 333444444443211 33455566555421 23688899999998886655433
No 78
>PLN00035 histone H4; Provisional
Probab=20.62 E-value=1.5e+02 Score=29.33 Aligned_cols=46 Identities=20% Similarity=0.333 Sum_probs=39.9
Q ss_pred HhhhhhcCCCCCCCCCHHHHHHHHHhhcccchhhhhhHHHHHHHHHHhhccc
Q 001818 144 RLHDYVTDCNDPGAVKREDIEAIASKYGVSKQDEAFNAELSEIYCRFVTSVL 195 (1009)
Q Consensus 144 ~LhN~~~~~~Dp~~l~~e~v~ai~~kyGvs~~~~~~~~el~~lY~~~~~svi 195 (1009)
.|.+.+.+ |++.-|.-|+.+-||-.-......||.++...|++.|+
T Consensus 22 ~~~d~i~~------ipk~~IrRLARr~GvkRIS~~ay~elr~vle~~l~~I~ 67 (103)
T PLN00035 22 VLRDNIQG------ITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVI 67 (103)
T ss_pred HHHhhhcc------CCHHHHHHHHHHcCcccchHHHHHHHHHHHHHHHHHHH
Confidence 45666665 78999999999999999988888899999999999876
No 79
>PF12833 HTH_18: Helix-turn-helix domain; PDB: 2K9S_A 3LSG_C 3OIO_A 1D5Y_B 3GBG_A 3OOU_A 1BL0_A 1XS9_A 3MN2_B 3MKL_B ....
Probab=20.44 E-value=3.5e+02 Score=23.70 Aligned_cols=45 Identities=22% Similarity=0.402 Sum_probs=29.9
Q ss_pred HHHHhCCChHHHHHHHHH---------HHHHHHHHHHHHHHHcCCCCHHHHHHH
Q 001818 799 VQKQVGLPSEYAQKIIKN---------ITTTKMAAAIETAVAQGKLNIKQIREL 843 (1009)
Q Consensus 799 iq~qLgLp~e~AqKiIk~---------it~~Kms~~ie~~va~GkL~~~~V~eL 843 (1009)
|++++|+++.+-+++.+. +...||..+.+-++..+.+++.+|...
T Consensus 1 lA~~~~~s~~~l~~~f~~~~g~s~~~~~~~~R~~~a~~~L~~~~~~~i~~ia~~ 54 (81)
T PF12833_consen 1 LADELGMSERYLSRIFKKETGMSFKQYLRELRLQRAKELLRQNTDLSIAEIAEE 54 (81)
T ss_dssp HHHHCTS-HHHHHHHHHHHHSS-HHHHHHHHHHHHHHHHHHHHTT--HHHHHHH
T ss_pred ChHHhCcCHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHhhcccHHHHHHH
Confidence 466777777777777776 556777776666666788888888653
No 80
>smart00526 H15 Domain in histone families 1 and 5.
Probab=20.28 E-value=2.8e+02 Score=24.20 Aligned_cols=60 Identities=17% Similarity=0.214 Sum_probs=46.4
Q ss_pred hHHHHHHHHhhhcCCcccccCChhHHHHhhhhhccCChhhHHHHHHHHHHHHHHHHhhcCCCCh
Q 001818 465 SKVYRKRLGQAVSGGALEAADSKASFLQSLCEELHFDPQKASEIHEEIYRQKLQQCVADGELND 528 (1009)
Q Consensus 465 ~kiYR~rL~~~v~sg~le~a~SkA~~LQ~lc~~L~Fdpe~A~~iheeIYr~kL~q~Vsd~~ltd 528 (1009)
.+-|...+.++++.=+=..+.|.++....|.+.-..+|. -+....+..|+.+|++|.|-.
T Consensus 4 hP~~~~mI~eAI~~l~er~GsS~~aI~kyi~~~~~~~~~----~~~~~l~~~Lk~~v~~G~l~q 63 (66)
T smart00526 4 HPPYSEMITEAISALKERKGSSLQAIKKYIEANYKVLPN----NFRSLLKLALKKLVASGKLVQ 63 (66)
T ss_pred CCCHHHHHHHHHHHcCCCCCCCHHHHHHHHHHhCCCChH----HHHHHHHHHHHHHHhcCceee
Confidence 345777888888776557778889899999998666664 345578899999999998753
Done!