BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 001820
(1009 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3H4S|A Chain A, Structure Of The Complex Of A Mitotic Kinesin With Its
Calcium Binding Regulator
Length = 386
Score = 280 bits (716), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 159/380 (41%), Positives = 237/380 (62%), Gaps = 18/380 (4%)
Query: 382 RKLYNQVQDLKGSIRVYCRVRPFLSGQSN-----YLSTVDHIEEGNITINTPSKHGKGWK 436
++ YN ++D+KG IRVYCR+RP +S+ L+TVD T+ P K K K
Sbjct: 2 KRYYNTIEDMKGKIRVYCRIRPLNEKESSEREKQMLTTVDEF-----TVEHPWKDDKR-K 55
Query: 437 SFSFNKVYGPSATQAEVFSDMQPLIRSVLDGYNVCIFAYGQTGSGKTYTMTGPRELTEKS 496
+++V+ A+Q ++F D + L++S +DGYNVCIFAYGQTGSGKT+T+ G E +
Sbjct: 56 QHIYDRVFDMRASQDDIFEDTKYLVQSAVDGYNVCIFAYGQTGSGKTFTIYGH----ESN 111
Query: 497 QGVNYRALSDLFLIAEQRKDIFRYDVAVQMLEIYNEQVRDLLVTDGSNR-RLEIRNSSQT 555
G+ RA +LF I ++ F + + M+E+Y + + DLL+ + R +LEI+ S+
Sbjct: 112 PGLTPRATKELFNILKRDSKRFSFSLKAYMVELYQDTLVDLLLPKSARRLKLEIKKDSKG 171
Query: 556 GLNVPDASLIPVSSTADVINLMNLGQKNRAVGATALNDRSSRSHSCLTVHVQGKDLTSGT 615
+ V + + IP+S+ ++ ++ G + R V T +N+ SSRSH L+V ++ DL + +
Sbjct: 172 MVFVENVTTIPISTLEELRMILERGSERRHVSGTNMNEESSRSHLILSVVIESIDLQTQS 231
Query: 616 MYRGCMHLVDLAGSERVNKSEVTGDRLKEAQHINRSLSALGDVIASLAQKNPHVPYRNSK 675
RG + VDLAGSERV KS G++LKEAQ IN+SLSALGDVI +L+ N H+PYRN K
Sbjct: 232 AARGKLSFVDLAGSERVKKSGSAGNQLKEAQSINKSLSALGDVIGALSSGNQHIPYRNHK 291
Query: 676 LTQLLQDSLGGQAKTLMFVHISPEPDAVGETISTLKFAERVATVELGAARVNKDSSDVKE 735
LT L+ DSLGG AKTLMFV++SP + ET ++L +A RV T+ + + S ++
Sbjct: 292 LTMLMSDSLGGNAKTLMFVNVSPAESNLDETYNSLLYASRVRTI-VNDPSKHISSKEMVR 350
Query: 736 LKEQIASLKAALARKEGESE 755
LK+ +A K A K+GE E
Sbjct: 351 LKKLVAYWKEQ-AGKKGEEE 369
>pdb|2H58|A Chain A, Crystal Structure Of The Kifc3 Motor Domain In Complex
With Adp
Length = 330
Score = 275 bits (703), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 161/336 (47%), Positives = 208/336 (61%), Gaps = 14/336 (4%)
Query: 392 KGSIRVYCRVRPFL--SGQSNYLSTVDHIEEGNITINTPSKHGKGWKSFSFNKVYGPSAT 449
KG+IRV RVRP G+ + + + +I GK SF +KV+ P A+
Sbjct: 3 KGNIRVIARVRPVTKEDGEGPEATNAVTFDADDDSIIHLLHKGKPV-SFELDKVFSPQAS 61
Query: 450 QAEVFSDMQPLIRSVLDGYNVCIFAYGQTGSGKTYTMTGPRELTEKSQGVNYRALSDLFL 509
Q +VF ++Q L+ S +DG+NVCIFAYGQTG+GKTYTM G T ++ G+N RAL LF
Sbjct: 62 QQDVFQEVQALVTSCIDGFNVCIFAYGQTGAGKTYTMEG----TAENPGINQRALQLLFS 117
Query: 510 IAEQRKDIFRYDVAVQMLEIYNEQVRDLLVTDGSNRRLEIR----NSSQTGLNVPDASLI 565
+++ + Y + V EIYNE +RDLL + +LEIR S Q L VP +
Sbjct: 118 EVQEKASDWEYTITVSAAEIYNEVLRDLLGKE-PQEKLEIRLCPDGSGQ--LYVPGLTEF 174
Query: 566 PVSSTADVINLMNLGQKNRAVGATALNDRSSRSHSCLTVHVQGKDLTSGTMYRGCMHLVD 625
V S D+ + G NR T LN+ SSRSH+ L V V+G D ++G G ++LVD
Sbjct: 175 QVQSVDDINKVFEFGHTNRTTEFTNLNEHSSRSHALLIVTVRGVDCSTGLRTTGKLNLVD 234
Query: 626 LAGSERVNKSEVTGDRLKEAQHINRSLSALGDVIASLAQKNPHVPYRNSKLTQLLQDSLG 685
LAGSERV KS G RL+EAQHIN+SLSALGDVIA+L + HVP+RNSKLT LLQDSL
Sbjct: 235 LAGSERVGKSGAEGSRLREAQHINKSLSALGDVIAALRSRQGHVPFRNSKLTYLLQDSLS 294
Query: 686 GQAKTLMFVHISPEPDAVGETISTLKFAERVATVEL 721
G +KTLM V +SP ET+ +LKFAERV +VEL
Sbjct: 295 GDSKTLMVVQVSPVEKNTSETLYSLKFAERVRSVEL 330
>pdb|1SDM|A Chain A, Crystal Structure Of Kinesin-Like Calmodulin Binding
Protein
pdb|3CNZ|A Chain A, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
pdb|3CNZ|B Chain B, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
pdb|3COB|A Chain A, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
pdb|3COB|C Chain C, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
Length = 369
Score = 270 bits (691), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 149/373 (39%), Positives = 236/373 (63%), Gaps = 17/373 (4%)
Query: 389 QDLKGSIRVYCRVRPF-----LSGQSNYLSTVDHIEEGNITINTPSKHGKGWKSFSFNKV 443
+D+KG IRVYCR+RP ++ + N + +VD T+ K K K +++V
Sbjct: 1 EDMKGKIRVYCRLRPLCEKEIIAKERNAIRSVDEF-----TVEHLWKDDKA-KQHMYDRV 54
Query: 444 YGPSATQAEVFSDMQPLIRSVLDGYNVCIFAYGQTGSGKTYTMTGPRELTEKSQGVNYRA 503
+ +ATQ +VF D + L++S +DGYNVCIFAYGQTGSGKT+T+ G + + G+ RA
Sbjct: 55 FDGNATQDDVFEDTKYLVQSAVDGYNVCIFAYGQTGSGKTFTIYGA----DSNPGLTPRA 110
Query: 504 LSDLFLIAEQRKDIFRYDVAVQMLEIYNEQVRDLLVTDGSNR-RLEIRNSSQTGLNVPDA 562
+S+LF I ++ + F + + M+E+Y + + DLL+ + R +L+I+ S+ ++V +
Sbjct: 111 MSELFRIMKKDSNKFSFSLKAYMVELYQDTLVDLLLPKQAKRLKLDIKKDSKGMVSVENV 170
Query: 563 SLIPVSSTADVINLMNLGQKNRAVGATALNDRSSRSHSCLTVHVQGKDLTSGTMYRGCMH 622
+++ +S+ ++ ++ G + R T +N++SSRSH ++V ++ +L + + RG +
Sbjct: 171 TVVSISTYEELKTIIQRGSEQRHTTGTLMNEQSSRSHLIVSVIIESTNLQTQAIARGKLS 230
Query: 623 LVDLAGSERVNKSEVTGDRLKEAQHINRSLSALGDVIASLAQKNPHVPYRNSKLTQLLQD 682
VDLAGSERV KS G++LKEAQ IN+SLSALGDVI++L+ N H+PYRN KLT L+ D
Sbjct: 231 FVDLAGSERVKKSGSAGNQLKEAQSINKSLSALGDVISALSSGNQHIPYRNHKLTMLMSD 290
Query: 683 SLGGQAKTLMFVHISPEPDAVGETISTLKFAERVATVELGAARVNKDSSDVKELKEQIAS 742
SLGG AKTLMFV+ISP + ET ++L +A RV ++ ++ N S +V LK+ ++
Sbjct: 291 SLGGNAKTLMFVNISPAESNLDETHNSLTYASRVRSIVNDPSK-NVSSKEVARLKKLVSY 349
Query: 743 LKAALARKEGESE 755
K RK + E
Sbjct: 350 WKEQAGRKGDDEE 362
>pdb|2NCD|A Chain A, Ncd (Non-Claret Disjunctional) Dimer From D. Melanogaster
Length = 420
Score = 257 bits (657), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 145/354 (40%), Positives = 219/354 (61%), Gaps = 13/354 (3%)
Query: 380 ENRKLYNQVQDLKGSIRVYCRVRPFLSGQSNYLS-TVDHIEEGNI---TINTPSKHGKGW 435
E ++L+N V DL+G+IRV+CR+RP L + N + T + +E + +I+ +K G
Sbjct: 54 ERKELHNTVMDLRGNIRVFCRIRPPLESEENRMCCTWTYHDESTVELQSIDAQAKSKMGQ 113
Query: 436 KSFSFNKVYGPSATQAEVFSDMQPLIRSVLDGYNVCIFAYGQTGSGKTYTMTGPRELTEK 495
+ FSF++V+ P ++Q+++F + PLI+S LDGYN+CIFAYGQTGSGKTYTM G E
Sbjct: 114 QIFSFDQVFHPLSSQSDIFEMVSPLIQSALDGYNICIFAYGQTGSGKTYTMDGVPE---- 169
Query: 496 SQGVNYRALSDLF-LIAEQRKDIFRYDVAVQMLEIYNEQVRDLLVTDGSNRRLEIRNSSQ 554
S GV R + LF I R + Y++ LEIYNE + DLL + + + + +++
Sbjct: 170 SVGVIPRTVDLLFDSIRGYRNLGWEYEIKATFLEIYNEVLYDLLSNEQKDMEIRMAKNNK 229
Query: 555 TGLNVPDASLIPVSSTADVINLMNLGQKNRAVGATALNDRSSRSHSCLTVHVQGKDLTSG 614
+ V + + V + +LM+ + NRA +TA N+RSSRSH+ + + G+
Sbjct: 230 NDIYVSNITEETVLDPNHLRHLMHTAKMNRATASTAGNERSSRSHAVTKLELIGRHAEKQ 289
Query: 615 TMYRGCMHLVDLAGSERVNKSEVTGDRLKEAQHINRSLSALGDVIASLAQKNPHVPYRNS 674
+ G ++LVDLAGSE S T R+ E ++INRSLS L +VI +L QK H+PYRNS
Sbjct: 290 EISVGSINLVDLAGSE----SPKTSTRMTETKNINRSLSELTNVILALLQKQDHIPYRNS 345
Query: 675 KLTQLLQDSLGGQAKTLMFVHISPEPDAVGETISTLKFAERVATVELGAARVNK 728
KLT LL SLGG +KTLMF+++SP D E++ +L+FA V + ++ A+ N+
Sbjct: 346 KLTHLLMPSLGGNSKTLMFINVSPFQDCFQESVKSLRFAASVNSCKMTKAKRNR 399
>pdb|1CZ7|A Chain A, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
pdb|1CZ7|B Chain B, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
pdb|1CZ7|C Chain C, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
pdb|1CZ7|D Chain D, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
Length = 406
Score = 257 bits (656), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 145/354 (40%), Positives = 219/354 (61%), Gaps = 13/354 (3%)
Query: 380 ENRKLYNQVQDLKGSIRVYCRVRPFLSGQSNYLS-TVDHIEEGNI---TINTPSKHGKGW 435
E ++L+N V DL+G+IRV+CR+RP L + N + T + +E + +I+ +K G
Sbjct: 40 ERKELHNTVMDLRGNIRVFCRIRPPLESEENRMCCTWTYHDESTVELQSIDAQAKSKMGQ 99
Query: 436 KSFSFNKVYGPSATQAEVFSDMQPLIRSVLDGYNVCIFAYGQTGSGKTYTMTGPRELTEK 495
+ FSF++V+ P ++Q+++F + PLI+S LDGYN+CIFAYGQTGSGKTYTM G E
Sbjct: 100 QIFSFDQVFHPLSSQSDIFEMVSPLIQSALDGYNICIFAYGQTGSGKTYTMDGVPE---- 155
Query: 496 SQGVNYRALSDLF-LIAEQRKDIFRYDVAVQMLEIYNEQVRDLLVTDGSNRRLEIRNSSQ 554
S GV R + LF I R + Y++ LEIYNE + DLL + + + + +++
Sbjct: 156 SVGVIPRTVDLLFDSIRGYRNLGWEYEIKATFLEIYNEVLYDLLSNEQKDMEIRMAKNNK 215
Query: 555 TGLNVPDASLIPVSSTADVINLMNLGQKNRAVGATALNDRSSRSHSCLTVHVQGKDLTSG 614
+ V + + V + +LM+ + NRA +TA N+RSSRSH+ + + G+
Sbjct: 216 NDIYVSNITEETVLDPNHLRHLMHTAKMNRATASTAGNERSSRSHAVTKLELIGRHAEKQ 275
Query: 615 TMYRGCMHLVDLAGSERVNKSEVTGDRLKEAQHINRSLSALGDVIASLAQKNPHVPYRNS 674
+ G ++LVDLAGSE S T R+ E ++INRSLS L +VI +L QK H+PYRNS
Sbjct: 276 EISVGSINLVDLAGSE----SPKTSTRMTETKNINRSLSELTNVILALLQKQDHIPYRNS 331
Query: 675 KLTQLLQDSLGGQAKTLMFVHISPEPDAVGETISTLKFAERVATVELGAARVNK 728
KLT LL SLGG +KTLMF+++SP D E++ +L+FA V + ++ A+ N+
Sbjct: 332 KLTHLLMPSLGGNSKTLMFINVSPFQDCFQESVKSLRFAASVNSCKMTKAKRNR 385
>pdb|1N6M|A Chain A, Rotation Of The StalkNECK AND ONE HEAD IN A NEW CRYSTAL
Structure Of The Kinesin Motor Protein, Ncd
pdb|1N6M|B Chain B, Rotation Of The StalkNECK AND ONE HEAD IN A NEW CRYSTAL
Structure Of The Kinesin Motor Protein, Ncd
Length = 409
Score = 254 bits (649), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 144/354 (40%), Positives = 218/354 (61%), Gaps = 13/354 (3%)
Query: 380 ENRKLYNQVQDLKGSIRVYCRVRPFLSGQSNYLS-TVDHIEEGNI---TINTPSKHGKGW 435
E ++L+N V DL+G+IRV+CR+RP L + N + T + +E + +I+ +K G
Sbjct: 43 ERKELHNTVMDLRGNIRVFCRIRPPLESEENRMCCTWTYHDESTVELQSIDAQAKSKMGQ 102
Query: 436 KSFSFNKVYGPSATQAEVFSDMQPLIRSVLDGYNVCIFAYGQTGSGKTYTMTGPRELTEK 495
+ FSF++V+ P ++Q+++F + PLI+S LDGYN+CIFAYGQTGSGKTYTM G E
Sbjct: 103 QIFSFDQVFHPLSSQSDIFEMVSPLIQSALDGYNICIFAYGQTGSGKTYTMDGVPE---- 158
Query: 496 SQGVNYRALSDLF-LIAEQRKDIFRYDVAVQMLEIYNEQVRDLLVTDGSNRRLEIRNSSQ 554
S GV R + LF I R + Y++ LEIYNE + DLL + + + + +++
Sbjct: 159 SVGVIPRTVDLLFDSIRGYRNLGWEYEIKATFLEIYNEVLYDLLSNEQKDMEIRMAKNNK 218
Query: 555 TGLNVPDASLIPVSSTADVINLMNLGQKNRAVGATALNDRSSRSHSCLTVHVQGKDLTSG 614
+ V + + V + +LM+ + NRA +TA N+RSSRSH+ + + G+
Sbjct: 219 NDIYVSNITEETVLDPNHLRHLMHTAKMNRATASTAGNERSSRSHAVTKLELIGRHAEKQ 278
Query: 615 TMYRGCMHLVDLAGSERVNKSEVTGDRLKEAQHINRSLSALGDVIASLAQKNPHVPYRNS 674
+ G ++LVDLAGSE S T R+ E ++I RSLS L +VI +L QK H+PYRNS
Sbjct: 279 EISVGSINLVDLAGSE----SPKTSTRMTETKNIKRSLSELTNVILALLQKQDHIPYRNS 334
Query: 675 KLTQLLQDSLGGQAKTLMFVHISPEPDAVGETISTLKFAERVATVELGAARVNK 728
KLT LL SLGG +KTLMF+++SP D E++ +L+FA V + ++ A+ N+
Sbjct: 335 KLTHLLMPSLGGNSKTLMFINVSPFQDCFQESVKSLRFAASVNSCKMTKAKRNR 388
>pdb|3U06|A Chain A, Crystal Structure Of The Kinesin-14 Ncdg347d
pdb|3U06|B Chain B, Crystal Structure Of The Kinesin-14 Ncdg347d
Length = 412
Score = 254 bits (648), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 144/354 (40%), Positives = 218/354 (61%), Gaps = 13/354 (3%)
Query: 380 ENRKLYNQVQDLKGSIRVYCRVRPFLSGQSNYLS-TVDHIEEGNI---TINTPSKHGKGW 435
E ++L+N V DL+ +IRV+CR+RP L + N + T + +E + +I+ +K G
Sbjct: 46 ERKELHNTVMDLRDNIRVFCRIRPPLESEENRMCCTWTYHDESTVELQSIDAQAKSKMGQ 105
Query: 436 KSFSFNKVYGPSATQAEVFSDMQPLIRSVLDGYNVCIFAYGQTGSGKTYTMTGPRELTEK 495
+ FSF++V+ P ++Q+++F + PLI+S LDGYN+CIFAYGQTGSGKTYTM G E
Sbjct: 106 QIFSFDQVFHPLSSQSDIFEMVSPLIQSALDGYNICIFAYGQTGSGKTYTMDGVPE---- 161
Query: 496 SQGVNYRALSDLF-LIAEQRKDIFRYDVAVQMLEIYNEQVRDLLVTDGSNRRLEIRNSSQ 554
S GV R + LF I R + Y++ LEIYNE + DLL + + + + +++
Sbjct: 162 SVGVIPRTVDLLFDSIRGYRNLGWEYEIKATFLEIYNEVLYDLLSNEQKDMEIRMAKNNK 221
Query: 555 TGLNVPDASLIPVSSTADVINLMNLGQKNRAVGATALNDRSSRSHSCLTVHVQGKDLTSG 614
+ V + + V + +LM+ + NRA +TA N+RSSRSH+ + + G+
Sbjct: 222 NDIYVSNITEETVLDPNHLRHLMHTAKMNRATASTAGNERSSRSHAVTKLELIGRHAEKQ 281
Query: 615 TMYRGCMHLVDLAGSERVNKSEVTGDRLKEAQHINRSLSALGDVIASLAQKNPHVPYRNS 674
+ G ++LVDLAGSE S T R+ E ++INRSLS L +VI +L QK H+PYRNS
Sbjct: 282 EISVGSINLVDLAGSE----SPKTSTRMTETKNINRSLSELTNVILALLQKQDHIPYRNS 337
Query: 675 KLTQLLQDSLGGQAKTLMFVHISPEPDAVGETISTLKFAERVATVELGAARVNK 728
KLT LL SLGG +KTLMF+++SP D E++ +L+FA V + ++ A+ N+
Sbjct: 338 KLTHLLMPSLGGNSKTLMFINVSPFQDCFQESVKSLRFAASVNSCKMTKAKRNR 391
>pdb|2REP|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member C1
Length = 376
Score = 254 bits (648), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 155/354 (43%), Positives = 207/354 (58%), Gaps = 28/354 (7%)
Query: 391 LKGSIRVYCRVRPFLSGQSNYLSTVDHIEEGNITINTP--------SKHGKGWKS----- 437
LKG+IRV+CRVRP L G+ + G + P S +G S
Sbjct: 20 LKGNIRVFCRVRPVLPGEPTPPPGLLLFPSGPGGPSDPPTRLSLSRSDERRGTLSGAPAP 79
Query: 438 -----FSFNKVYGPSATQAEVFSDMQPLIRSVLDGYNVCIFAYGQTGSGKTYTMTGPREL 492
FSF++V+ P + Q EVF ++ L++S LDGY VCIFAYGQTGSGKT+TM G
Sbjct: 80 PPRHDFSFDRVFPPGSGQDEVFEEIAMLVQSALDGYPVCIFAYGQTGSGKTFTMEGGPGG 139
Query: 493 TEKSQGVNYRALSDLFLIAEQRK-DIFRYDVAVQMLEIYNEQVRDLLVT---DGSNRRLE 548
+ +G+ RAL LF +A++ + Y +EIYNE VRDLL T G E
Sbjct: 140 DPQLEGLIPRALRHLFSVAQELSGQGWTYSFVASYVEIYNETVRDLLATGTRKGQGGECE 199
Query: 549 IRNSSQTG--LNVPDASLIPVSSTADVINLMNLGQKNRAVGATALNDRSSRSHSCLTVHV 606
IR + L V +A +PVS +V L++L ++NRAV TA N+RSSRSHS + +
Sbjct: 200 IRRAGPGSEELTVTNARYVPVSCEKEVDALLHLARQNRAVARTAQNERSSRSHSVFQLQI 259
Query: 607 QGKDLTSGTMYRGCMHLVDLAGSERVNKSEVTG----DRLKEAQHINRSLSALGDVIASL 662
G+ + G + LVDLAGSER++ G +RL+E Q IN SLS LG VI +L
Sbjct: 260 SGEHSSRGLQCGAPLSLVDLAGSERLDPGLALGPGERERLRETQAINSSLSTLGLVIMAL 319
Query: 663 AQKNPHVPYRNSKLTQLLQDSLGGQAKTLMFVHISPEPDAVGETISTLKFAERV 716
+ K HVPYRNSKLT LLQ+SLGG AK LMFV+ISP + V E++++L+FA +V
Sbjct: 320 SNKESHVPYRNSKLTYLLQNSLGGSAKMLMFVNISPLEENVSESLNSLRFASKV 373
>pdb|1F9T|A Chain A, Crystal Structures Of Kinesin Mutants Reveal A Signalling
Pathway For Activation Of The Motor Atpase
Length = 358
Score = 253 bits (647), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 145/358 (40%), Positives = 215/358 (60%), Gaps = 24/358 (6%)
Query: 382 RKLYNQVQDLKGSIRVYCRVRPFLSGQSNYLSTVDHIEEGNITINTPS------KHGKGW 435
R L+N++Q+L+G+IRVYCR+RP L N +++ ++ E + S ++
Sbjct: 3 RTLHNELQELRGNIRVYCRIRPALKNLENSDTSLINVNEFDDNSGVQSMEVTKIQNTAQV 62
Query: 436 KSFSFNKVYGPSATQAEVFSDMQPLIRSVLDGYNVCIFAYGQTGSGKTYTMTGPRELTEK 495
F F+K++ T +VF ++ L++S LDGYNVCIFAYGQTGSGKT+TM P +
Sbjct: 63 HEFKFDKIFDQQDTNVDVFKEVGQLVQSSLDGYNVCIFAYGQTGSGKTFTMLNPGD---- 118
Query: 496 SQGVNYRALSDLF-LIAEQRKDIFRYDVAVQMLEIYNEQVRDLLVTDGSNR-------RL 547
G+ +S +F I + + + Y V + +EIYNE + DLL +D +N+ +
Sbjct: 119 --GIIPSTISHIFNWINKLKTKGWDYKVNCEFIEIYNENIVDLLRSDNNNKEDTSIGLKH 176
Query: 548 EIRNSSQTGLNVPDASL-IPVSSTADVINLMNLGQKNRAVGATALNDRSSRSHSCLTVHV 606
EIR+ +T + S V ++ K R+ +TA N+ SSRSHS +H+
Sbjct: 177 EIRHDQETKTTTITNVTSCKLESEEMVEIILKKANKLRSTASTASNEHSSRSHSIFIIHL 236
Query: 607 QGKDLTSGTMYRGCMHLVDLAGSERVNKSEVTGDRLKEAQHINRSLSALGDVIASLAQKN 666
G + +G G ++LVDLAGSER+N S+V GDRL+E Q+IN+SLS LGDVI +L Q +
Sbjct: 237 SGSNAKTGAHSYGTLNLVDLAGSERINVSQVVGDRLRETQNINKSLSCLGDVIHALGQPD 296
Query: 667 P---HVPYRNSKLTQLLQDSLGGQAKTLMFVHISPEPDAVGETISTLKFAERVATVEL 721
H+P+RNSKLT LLQ SL G +KTLMFV+ISP + ET+++L+FA +V + L
Sbjct: 297 STKRHIPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASKVNSTRL 354
>pdb|3T0Q|A Chain A, Motor Domain Structure Of The Kar3-Like Kinesin From
Ashbya Gossypii
Length = 349
Score = 252 bits (644), Expect = 6e-67, Method: Compositional matrix adjust.
Identities = 147/353 (41%), Positives = 220/353 (62%), Gaps = 29/353 (8%)
Query: 391 LKGSIRVYCRVRPFLSGQSNYLSTVDHIEEGN-------ITINTPSKHGKGWKSFSFNKV 443
L+G+IRVYCRVRP L + +S + IE+ N +TIN + +F F+ +
Sbjct: 3 LRGNIRVYCRVRPPLLNEPQDMSHI-LIEKFNEAKGAQSLTINRNEGRILSY-NFQFDMI 60
Query: 444 YGPSATQAEVFSDMQPLIRSVLDGYNVCIFAYGQTGSGKTYTMTGPRELTEKSQGVNYRA 503
+ PS T E+F +++ L++S LDGYNVCIFAYGQTGSGKTYTM G+
Sbjct: 61 FEPSHTNKEIFEEIRQLVQSSLDGYNVCIFAYGQTGSGKTYTMLNA------GDGMIPMT 114
Query: 504 LSDLF-LIAEQRKDIFRYDVAVQMLEIYNEQVRDLLVTDGSNRRL-EIRNS--------- 552
LS +F A ++ + Y++ + +EIYNE + DLL S+ + EI +S
Sbjct: 115 LSHIFKWTANLKERGWNYEMECEYIEIYNETILDLLRDFKSHDNIDEILDSQKHDIRHDH 174
Query: 553 SQTGLNVPDASLIPVSSTADVINLMNLGQKNRAVGATALNDRSSRSHSCLTVHVQGKDLT 612
+ G + + + + ++ST+ V ++ K R+ AT N+RSSRSHS VH+ G++L
Sbjct: 175 EKQGTYITNVTRMKMTSTSQVDTILKKASKMRSTAATRSNERSSRSHSVFMVHINGRNLH 234
Query: 613 SGTMYRGCMHLVDLAGSERVNKSEVTGDRLKEAQHINRSLSALGDVIASLAQKNP---HV 669
+G +G ++LVDLAGSER+N S VTG+RL+E Q+IN+SLS LGDVI +L + ++
Sbjct: 235 TGETSQGKLNLVDLAGSERINSSAVTGERLRETQNINKSLSCLGDVIYALNTPDAGKRYI 294
Query: 670 PYRNSKLTQLLQDSLGGQAKTLMFVHISPEPDAVGETISTLKFAERVATVELG 722
P+RNSKLT LLQ SL G +KTLMFV+I P+P+ + ET+++L+FA +V + ++
Sbjct: 295 PFRNSKLTYLLQYSLVGDSKTLMFVNIPPDPNHISETLNSLRFASKVNSTKIA 347
>pdb|3L1C|A Chain A, Kinesin-14 Protein Ncd, T436s Mutant
pdb|3L1C|B Chain B, Kinesin-14 Protein Ncd, T436s Mutant
Length = 383
Score = 251 bits (642), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 142/347 (40%), Positives = 215/347 (61%), Gaps = 13/347 (3%)
Query: 380 ENRKLYNQVQDLKGSIRVYCRVRPFLSGQSNYLS-TVDHIEEGNI---TINTPSKHGKGW 435
E ++L+N V DL+G+IRV+CR+RP L + N + T + +E + +I+ +K G
Sbjct: 43 ERKELHNTVMDLRGNIRVFCRIRPPLESEENRMCCTWTYHDESTVELQSIDAQAKSKMGQ 102
Query: 436 KSFSFNKVYGPSATQAEVFSDMQPLIRSVLDGYNVCIFAYGQTGSGKTYTMTGPRELTEK 495
+ FSF++V+ P ++Q+++F + PLI+S LDGYN+CIFAYGQ+GSGKTYTM G E
Sbjct: 103 QIFSFDQVFHPLSSQSDIFEMVSPLIQSALDGYNICIFAYGQSGSGKTYTMDGVPE---- 158
Query: 496 SQGVNYRALSDLF-LIAEQRKDIFRYDVAVQMLEIYNEQVRDLLVTDGSNRRLEIRNSSQ 554
S GV R + LF I R + Y++ LEIYNE + DLL + + + + +++
Sbjct: 159 SVGVIPRTVDLLFDSIRGYRNLGWEYEIKATFLEIYNEVLYDLLSNEQKDMEIRMAKNNK 218
Query: 555 TGLNVPDASLIPVSSTADVINLMNLGQKNRAVGATALNDRSSRSHSCLTVHVQGKDLTSG 614
+ V + + V + +LM+ + NRA +TA N+RSSRSH+ + + G+
Sbjct: 219 NDIYVSNITEETVLDPNHLRHLMHTAKMNRATASTAGNERSSRSHAVTKLELIGRHAEKQ 278
Query: 615 TMYRGCMHLVDLAGSERVNKSEVTGDRLKEAQHINRSLSALGDVIASLAQKNPHVPYRNS 674
+ G ++LVDLAGSE S T R+ E ++INRSLS L +VI +L QK H+PYRNS
Sbjct: 279 EISVGSINLVDLAGSE----SPKTSTRMTETKNINRSLSELTNVILALLQKQDHIPYRNS 334
Query: 675 KLTQLLQDSLGGQAKTLMFVHISPEPDAVGETISTLKFAERVATVEL 721
KLT LL SLGG +KTLMF+++SP D E++ +L+FA V + ++
Sbjct: 335 KLTHLLMPSLGGNSKTLMFINVSPFQDCFQESVKSLRFAASVNSCKM 381
>pdb|4ETP|A Chain A, C-Terminal Motor And Motor Homology Domain Of Kar3vik1
Fused To A Synthetic Heterodimeric Coiled Coil
Length = 403
Score = 250 bits (638), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 144/358 (40%), Positives = 214/358 (59%), Gaps = 24/358 (6%)
Query: 382 RKLYNQVQDLKGSIRVYCRVRPFLSGQSNYLSTVDHIEEGNITINTPS------KHGKGW 435
R L+N++Q+L+G+IRVY R+RP L N +++ ++ E + S ++
Sbjct: 48 RTLHNELQELRGNIRVYLRIRPALKNLENSDTSLINVNEFDDNSGVQSMEVTKIQNTAQV 107
Query: 436 KSFSFNKVYGPSATQAEVFSDMQPLIRSVLDGYNVCIFAYGQTGSGKTYTMTGPRELTEK 495
F F+K++ T +VF ++ L++S LDGYNV IFAYGQTGSGKT+TM P
Sbjct: 108 HEFKFDKIFDQQDTNVDVFKEVGQLVQSSLDGYNVAIFAYGQTGSGKTFTMLNP------ 161
Query: 496 SQGVNYRALSDLF-LIAEQRKDIFRYDVAVQMLEIYNEQVRDLLVTDGSNR-------RL 547
G+ +S +F I + + + Y V + +EIYNE + DLL +D +N+ +
Sbjct: 162 GDGIIPSTISHIFNWINKLKTKGWDYKVNAEFIEIYNENIVDLLRSDNNNKEDTSIGLKH 221
Query: 548 EIRNSSQTGLNVPDASL-IPVSSTADVINLMNLGQKNRAVGATALNDRSSRSHSCLTVHV 606
EIR+ +T + + S V ++ K R+ +TA N+ SSRSHS +H+
Sbjct: 222 EIRHDQETKTTTITNVTSVKLESEEMVEIILKKANKLRSTASTASNEHSSRSHSIFIIHL 281
Query: 607 QGKDLTSGTMYRGCMHLVDLAGSERVNKSEVTGDRLKEAQHINRSLSALGDVIASLAQKN 666
G + +G G ++LVDLAGSER+N S+V GDRL+E Q+IN+SLSALGDVI +L Q +
Sbjct: 282 SGSNAKTGAHSYGTLNLVDLAGSERINVSQVVGDRLRETQNINKSLSALGDVIHALGQPD 341
Query: 667 P---HVPYRNSKLTQLLQDSLGGQAKTLMFVHISPEPDAVGETISTLKFAERVATVEL 721
H+P+RNSKLT LLQ SL G +KTLMFV+ISP + ET+++L+FA +V + L
Sbjct: 342 STKRHIPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASKVNSTRL 399
>pdb|4GKR|A Chain A, Structure Of The C-Terminal Motor Domain Of Kar3 From
Candida Glabrata
pdb|4GKR|B Chain B, Structure Of The C-Terminal Motor Domain Of Kar3 From
Candida Glabrata
Length = 371
Score = 243 bits (620), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 144/361 (39%), Positives = 217/361 (60%), Gaps = 31/361 (8%)
Query: 382 RKLYNQVQDLKGSIRVYCRVRPFLSGQSNYLSTV-------DHIEEGNITINTPSKHGKG 434
R L+N++Q+L+G+IRVYCR+RP L + + + + D+ ++G +TIN +
Sbjct: 17 RALHNELQELRGNIRVYCRIRPPLPHEDDNIEHIKVQPFDDDNGDQG-MTIN---RGNSQ 72
Query: 435 WKSFSFNKVYGPSATQAEVFSDMQPLIRSVLDGYNVCIFAYGQTGSGKTYTMTGPRELTE 494
F F+K++ T E+F ++ LI+S LDGYNVCIFAYGQTGSGKTYTM P
Sbjct: 73 VIPFKFDKIFDQQETNDEIFKEVGQLIQSSLDGYNVCIFAYGQTGSGKTYTMLNP----- 127
Query: 495 KSQGVNYRALSDLF-LIAEQRKDIFRYDVAVQMLEIYNEQVRDLLVTDG---------SN 544
G+ ++ +F I + + Y V+ + +EIYNE + DLL + ++
Sbjct: 128 -GDGIVPATINHIFSWIDKLAARGWSYKVSCEFIEIYNENIVDLLRSGAPSQENNDRNAD 186
Query: 545 RRLEIRNSSQTGLN-VPDASLIPVSSTADVINLMNLGQKNRAVGATALNDRSSRSHSCLT 603
+ EIR+ + + + + + S V ++ K R+ +TA N+ SSRSHS
Sbjct: 187 SKHEIRHDQELKTTYITNITTCVLDSRDTVDKVLKRANKLRSTASTAANEHSSRSHSIFI 246
Query: 604 VHVQGKDLTSGTMYRGCMHLVDLAGSERVNKSEVTGDRLKEAQHINRSLSALGDVIASLA 663
+H++GK+ +G +G ++LVDLAGSER+N S V G+RL+E Q IN+SLS LGDVI +L
Sbjct: 247 IHLEGKNEGTGEKSQGILNLVDLAGSERLNSSMVVGERLRETQSINKSLSCLGDVIHALN 306
Query: 664 Q---KNPHVPYRNSKLTQLLQDSLGGQAKTLMFVHISPEPDAVGETISTLKFAERVATVE 720
+ H+P+RNSKLT LLQ SL G +KTLMFV+ISP + ETI++L+FA +V +
Sbjct: 307 SPDGQKRHIPFRNSKLTYLLQYSLIGSSKTLMFVNISPAALHLNETINSLRFASKVNNTK 366
Query: 721 L 721
+
Sbjct: 367 M 367
>pdb|3KAR|A Chain A, The Motor Domain Of Kinesin-Like Protein Kar3, A
Saccharomyces Cerevisiae Kinesin-Related Protein
Length = 346
Score = 240 bits (613), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 140/347 (40%), Positives = 205/347 (59%), Gaps = 24/347 (6%)
Query: 393 GSIRVYCRVRPFLSGQSNYLSTVDHIEEGNITINTPS------KHGKGWKSFSFNKVYGP 446
G+IRVYCR+RP L N +++ ++ E + S ++ F F+K++
Sbjct: 2 GNIRVYCRIRPALKNLENSDTSLINVNEFDDNSGVQSMEVTKIQNTAQVHEFKFDKIFDQ 61
Query: 447 SATQAEVFSDMQPLIRSVLDGYNVCIFAYGQTGSGKTYTMTGPRELTEKSQGVNYRALSD 506
T +VF ++ L++S LDGYNVCIFAYGQTGSGKT+TM P + G+ +S
Sbjct: 62 QDTNVDVFKEVGQLVQSSLDGYNVCIFAYGQTGSGKTFTMLNPGD------GIIPSTISH 115
Query: 507 LF-LIAEQRKDIFRYDVAVQMLEIYNEQVRDLLVTDGSNR-------RLEIRNSSQTGLN 558
+F I + + + Y V + +EIYNE + DLL +D +N+ + EIR+ +T
Sbjct: 116 IFNWINKLKTKGWDYKVNCEFIEIYNENIVDLLRSDNNNKEDTSIGLKHEIRHDQETKTT 175
Query: 559 VPDASL-IPVSSTADVINLMNLGQKNRAVGATALNDRSSRSHSCLTVHVQGKDLTSGTMY 617
+ S V ++ K R+ +TA N+ SSRSHS +H+ G + +G
Sbjct: 176 TITNVTSCKLESEEMVEIILKKANKLRSTASTASNEHSSRSHSIFIIHLSGSNAKTGAHS 235
Query: 618 RGCMHLVDLAGSERVNKSEVTGDRLKEAQHINRSLSALGDVIASLAQKNP---HVPYRNS 674
G ++LVDLAGSER+N S+V GDRL+E Q+IN+SLS LGDVI +L Q + H+P+RNS
Sbjct: 236 YGTLNLVDLAGSERINVSQVVGDRLRETQNINKSLSCLGDVIHALGQPDSTKRHIPFRNS 295
Query: 675 KLTQLLQDSLGGQAKTLMFVHISPEPDAVGETISTLKFAERVATVEL 721
KLT LLQ SL G +KTLMFV+ISP + ET+++L+FA +V + L
Sbjct: 296 KLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASKVNSTRL 342
>pdb|1F9U|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
Length = 347
Score = 240 bits (612), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 139/349 (39%), Positives = 206/349 (59%), Gaps = 24/349 (6%)
Query: 391 LKGSIRVYCRVRPFLSGQSNYLSTVDHIEEGNITINTPS------KHGKGWKSFSFNKVY 444
++G+IRVYCR+RP L N +++ ++ E + S ++ F F+K++
Sbjct: 1 MRGNIRVYCRIRPALKNLENSDTSLINVNEFDDNSGVQSMEVTKIQNTAQVHEFKFDKIF 60
Query: 445 GPSATQAEVFSDMQPLIRSVLDGYNVCIFAYGQTGSGKTYTMTGPRELTEKSQGVNYRAL 504
T +VF ++ L++S LDGYNVCIFAYGQTGSGKT+TM P + G+ +
Sbjct: 61 DQQDTNVDVFKEVGQLVQSSLDGYNVCIFAYGQTGSGKTFTMLNPGD------GIIPSTI 114
Query: 505 SDLF-LIAEQRKDIFRYDVAVQMLEIYNEQVRDLLVTDGSNR-------RLEIRNSSQTG 556
S +F I + + + Y V + +EIYNE + DLL +D +N+ + EIR+ +T
Sbjct: 115 SHIFNWINKLKTKGWDYKVNCEFIEIYNENIVDLLRSDNNNKEDTSIGLKHEIRHDQETK 174
Query: 557 LNVPDASL-IPVSSTADVINLMNLGQKNRAVGATALNDRSSRSHSCLTVHVQGKDLTSGT 615
+ S V ++ K R+ +TA N+ SSRSHS +H+ G + +G
Sbjct: 175 TTTITNVTSCKLESEEMVEIILKKANKLRSTASTASNEHSSRSHSIFIIHLSGSNAKTGA 234
Query: 616 MYRGCMHLVDLAGSERVNKSEVTGDRLKEAQHINRSLSALGDVIASLAQKNP---HVPYR 672
G ++LVDLAGSER+N S+V GDRL+E Q+I +SLS LGDVI +L Q + H+P+R
Sbjct: 235 HSYGTLNLVDLAGSERINVSQVVGDRLRETQNIKKSLSCLGDVIHALGQPDSTKRHIPFR 294
Query: 673 NSKLTQLLQDSLGGQAKTLMFVHISPEPDAVGETISTLKFAERVATVEL 721
NSKLT LLQ SL G +KTLMFV+ISP + ET+++L+FA +V + L
Sbjct: 295 NSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASKVNSTRL 343
>pdb|1F9W|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
pdb|1F9W|B Chain B, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
Length = 347
Score = 239 bits (611), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 139/349 (39%), Positives = 206/349 (59%), Gaps = 24/349 (6%)
Query: 391 LKGSIRVYCRVRPFLSGQSNYLSTVDHIEEGNITINTPS------KHGKGWKSFSFNKVY 444
++G+IRVYCR+RP L N +++ ++ E + S ++ F F+K++
Sbjct: 1 MRGNIRVYCRIRPALKNLENSDTSLINVNEFDDNSGVQSMEVTKIQNTAQVHEFKFDKIF 60
Query: 445 GPSATQAEVFSDMQPLIRSVLDGYNVCIFAYGQTGSGKTYTMTGPRELTEKSQGVNYRAL 504
T +VF ++ L++S LDGYNVCIFAYGQTGSGKT+TM P + G+ +
Sbjct: 61 DQQDTNVDVFKEVGQLVQSSLDGYNVCIFAYGQTGSGKTFTMLNPGD------GIIPSTI 114
Query: 505 SDLF-LIAEQRKDIFRYDVAVQMLEIYNEQVRDLLVTDGSNR-------RLEIRNSSQTG 556
S +F I + + + Y V + +EIYNE + DLL +D +N+ + EIR+ +T
Sbjct: 115 SHIFNWINKLKTKGWDYKVNCEFIEIYNENIVDLLRSDNNNKEDTSIGLKHEIRHDQETK 174
Query: 557 LNVPDASL-IPVSSTADVINLMNLGQKNRAVGATALNDRSSRSHSCLTVHVQGKDLTSGT 615
+ S V ++ K R+ +TA N+ SSRSHS +H+ G + +G
Sbjct: 175 TTTITNVTSCKLESEEMVEIILKKANKLRSTASTASNEHSSRSHSIFIIHLSGSNAKTGA 234
Query: 616 MYRGCMHLVDLAGSERVNKSEVTGDRLKEAQHINRSLSALGDVIASLAQKNP---HVPYR 672
G ++LVDLAGS R+N S+V GDRL+E Q+IN+SLS LGDVI +L Q + H+P+R
Sbjct: 235 HSYGTLNLVDLAGSARINVSQVVGDRLRETQNINKSLSCLGDVIHALGQPDSTKRHIPFR 294
Query: 673 NSKLTQLLQDSLGGQAKTLMFVHISPEPDAVGETISTLKFAERVATVEL 721
NSKLT LLQ SL G +KTLMFV+ISP + ET+++L+FA +V + L
Sbjct: 295 NSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASKVNSTRL 343
>pdb|1F9V|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
Length = 347
Score = 239 bits (610), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 139/349 (39%), Positives = 206/349 (59%), Gaps = 24/349 (6%)
Query: 391 LKGSIRVYCRVRPFLSGQSNYLSTVDHIEEGNITINTPS------KHGKGWKSFSFNKVY 444
++G+IRVYCR+RP L N +++ ++ E + S ++ F F+K++
Sbjct: 1 MRGNIRVYCRIRPALKNLENSDTSLINVNEFDDNSGVQSMEVTKIQNTAQVHEFKFDKIF 60
Query: 445 GPSATQAEVFSDMQPLIRSVLDGYNVCIFAYGQTGSGKTYTMTGPRELTEKSQGVNYRAL 504
T +VF ++ L++S LDGYNVCIFAYGQTGSGKT+TM P + G+ +
Sbjct: 61 DQQDTNVDVFKEVGQLVQSSLDGYNVCIFAYGQTGSGKTFTMLNPGD------GIIPSTI 114
Query: 505 SDLF-LIAEQRKDIFRYDVAVQMLEIYNEQVRDLLVTDGSNR-------RLEIRNSSQTG 556
S +F I + + + Y V + +EIYNE + DLL +D +N+ + EIR+ +T
Sbjct: 115 SHIFNWINKLKTKGWDYKVNCEFIEIYNENIVDLLRSDNNNKEDTSIGLKHEIRHDQETK 174
Query: 557 LNVPDASL-IPVSSTADVINLMNLGQKNRAVGATALNDRSSRSHSCLTVHVQGKDLTSGT 615
+ S V ++ K R+ +TA N+ SS SHS +H+ G + +G
Sbjct: 175 TTTITNVTSCKLESEEMVEIILKKANKLRSTASTASNEHSSASHSIFIIHLSGSNAKTGA 234
Query: 616 MYRGCMHLVDLAGSERVNKSEVTGDRLKEAQHINRSLSALGDVIASLAQKNP---HVPYR 672
G ++LVDLAGSER+N S+V GDRL+E Q+IN+SLS LGDVI +L Q + H+P+R
Sbjct: 235 HSYGTLNLVDLAGSERINVSQVVGDRLRETQNINKSLSCLGDVIHALGQPDSTKRHIPFR 294
Query: 673 NSKLTQLLQDSLGGQAKTLMFVHISPEPDAVGETISTLKFAERVATVEL 721
NSKLT LLQ SL G +KTLMFV+ISP + ET+++L+FA +V + L
Sbjct: 295 NSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASKVNSTRL 343
>pdb|3B6U|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3b In Complex With Adp
pdb|3B6U|B Chain B, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3b In Complex With Adp
Length = 372
Score = 239 bits (610), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 146/349 (41%), Positives = 219/349 (62%), Gaps = 15/349 (4%)
Query: 394 SIRVYCRVRPFLSGQ---SNYLSTVD-HIEEGNITINTPSKHGKGW-KSFSFNKVYGPSA 448
S+RV R RP ++G+ ++Y VD ++ G +++ P K+F+F+ VY +A
Sbjct: 22 SVRVVVRCRP-MNGKEKAASYDKVVDVDVKLGQVSVKNPKGTAHEMPKTFTFDAVYDWNA 80
Query: 449 TQAEVFSD-MQPLIRSVLDGYNVCIFAYGQTGSGKTYTMTGPRELTEKSQGVNYRALSDL 507
Q E++ + +PL+ SVL G+N IFAYGQTG+GKTYTM G R EK +GV + +
Sbjct: 81 KQFELYDETFRPLVDSVLQGFNGTIFAYGQTGTGKTYTMEGIRGDPEK-RGVIPNSFDHI 139
Query: 508 FLIAEQRKDIFRYDVAVQMLEIYNEQVRDLLVTDGSNRRLEIRNSSQTGLNVPDASLIPV 567
F + ++ +Y V LEIY E++RDLL D + +RLE++ TG+ V D S
Sbjct: 140 FTHISRSQNQ-QYLVRASYLEIYQEEIRDLLSKDQT-KRLELKERPDTGVYVKDLSSFVT 197
Query: 568 SSTADVINLMNLGQKNRAVGATALNDRSSRSHSCLTVHVQGKDLT---SGTMYRGCMHLV 624
S ++ ++MN+G +NR+VGAT +N+ SSRSH+ + ++ ++ + G ++LV
Sbjct: 198 KSVKEIEHVMNVGNQNRSVGATNMNEHSSRSHAIFVITIECSEVGLDGENHIRVGKLNLV 257
Query: 625 DLAGSERVNKSEVTGDRLKEAQHINRSLSALGDVIASLAQ-KNPHVPYRNSKLTQLLQDS 683
DLAGSER K+ G+RLKEA IN SLSALG+VI++L K+ H+PYR+SKLT+LLQDS
Sbjct: 258 DLAGSERQAKTGAQGERLKEATKINLSLSALGNVISALVDGKSTHIPYRDSKLTRLLQDS 317
Query: 684 LGGQAKTLMFVHISPEPDAVGETISTLKFAERVATVELGAARVNKDSSD 732
LGG AKT+M ++ P V ET++TL++A R ++ RVN+D D
Sbjct: 318 LGGNAKTVMVANVGPASYNVEETLTTLRYANRAKNIK-NKPRVNEDPKD 365
>pdb|4H1G|A Chain A, Structure Of Candida Albicans Kar3 Motor Domain Fused To
Maltose- Binding Protein
Length = 715
Score = 230 bits (587), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 159/381 (41%), Positives = 216/381 (56%), Gaps = 30/381 (7%)
Query: 366 GLAHAASGYHRVLEENRKLYNQVQDLKGSIRVYCRVRPFLSGQSNYLSTV--DHIE-EGN 422
+ +AASG V LKG+IRV+CR+R S S+ S+ D I+ E
Sbjct: 347 AVINAASGRQTVDAALAAAQTNAAALKGNIRVFCRIRNVSSSSSSSSSSSSEDIIQYEAP 406
Query: 423 ITINTPSKH--------GKGWKS--FSFNKVYGPSATQAEVFSDMQPLIRSVLDGYNVCI 472
IN SK + + F F+K++ + VF ++ LI+ LDG NVC+
Sbjct: 407 QDINDESKQELVITRNINNNFSNLRFLFDKIFEREQSNDLVFEELSQLIQCSLDGTNVCV 466
Query: 473 FAYGQTGSGKTYTMTGPRELTEKSQGVNYRALSDLF-LIAEQRKDIFRYDVAVQMLEIYN 531
FAYGQTGSGKT+TM+ P + G+ +L +F I E ++ + Y V + +EIYN
Sbjct: 467 FAYGQTGSGKTFTMSHP------TNGMIPLSLKKIFNDIEELKEKGWSYTVRGKFIEIYN 520
Query: 532 EQVRDLLVTD-GSNRRLEIRNSSQTG-LNVPDASLIPVSSTADVINLMNLGQKNRAVGAT 589
E + DLL N + EI++ G V + S I + S I ++N K R+ AT
Sbjct: 521 EAIVDLLNPKIDPNTKYEIKHDDIAGKTTVTNVSTIDIKSPEQAITILNQANKKRSTAAT 580
Query: 590 ALNDRSSRSHSCLTVHVQGKD-LTSGTMYRGCMHLVDLAGSERVNKSEVTGDRLKEAQHI 648
ND SSRSHS + +QG + LT + Y G ++L+DLAGSER+N S GDRLKE Q I
Sbjct: 581 KSNDHSSRSHSIFIIDLQGYNSLTKESSY-GTLNLIDLAGSERLNNSRAEGDRLKETQAI 639
Query: 649 NRSLSALGDVIASLAQKN-PHVPYRNSKLTQLLQDSLGGQAKTLMFVHISPEPDAVGETI 707
N+SLS LGDVI SL K+ HVPYRNSKLT LL+ SLGG +KTLMFV+ISP + ETI
Sbjct: 640 NKSLSCLGDVIHSLNLKDGSHVPYRNSKLTYLLKHSLGGNSKTLMFVNISPLTKDLNETI 699
Query: 708 STLKFAERVATVELGAARVNK 728
++L+FA +V R+NK
Sbjct: 700 NSLRFATKVNNT-----RINK 715
>pdb|3B6V|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3c In Complex With Adp
pdb|3B6V|B Chain B, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3c In Complex With Adp
Length = 395
Score = 219 bits (558), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 144/375 (38%), Positives = 220/375 (58%), Gaps = 41/375 (10%)
Query: 394 SIRVYCRVRPF-----LSGQSNYLSTVDHIEEGNITINTP-SKHGKGWKSFSFNKVYGPS 447
+++V R RP +G L T+D ++ G +T+ P + G+ K+F+F+ VY S
Sbjct: 22 ALKVVARCRPLSRKEEAAGHEQIL-TMD-VKLGQVTLRNPRAAPGELPKTFTFDAVYDAS 79
Query: 448 ATQAEVFSD-MQPLIRSVLDGYNVCIFAYGQTGSGKTYTMTGPRELTEKSQGVNYRALSD 506
+ QA+++ + ++PLI SVL G+N +FAYGQTG+GKTYTM G + + +GV A
Sbjct: 80 SKQADLYDETVRPLIDSVLQGFNGTVFAYGQTGTGKTYTMQGTW-VEPELRGVIPNAFEH 138
Query: 507 LFLIAEQRKDIFRYDVAVQMLEIYNEQVRDLLVTDGSNRRLEIRNSSQTGLNVPDASLIP 566
+F + ++ +Y V LEIY E++RDLL + +RLE++ + +TG+ + D S
Sbjct: 139 IFTHISRSQNQ-QYLVRASYLEIYQEEIRDLLSKE-PGKRLELKENPETGVYIKDLSSFV 196
Query: 567 VSSTADVINLMNLGQKNRAVGATALNDRSSRSHSCLTVHVQGKDLTSGT---MYRGCMHL 623
+ ++ ++MNLG + RAVG+T +N+ SSRSH+ + V+ + S + G ++L
Sbjct: 197 TKNVKEIEHVMNLGNQTRAVGSTHMNEVSSRSHAIFIITVECSERGSDGQDHIRVGKLNL 256
Query: 624 VDLAGSERVNKS------------------------EVTGDRLKEAQHINRSLSALGDVI 659
VDLAGSER NK+ G+R KEA IN SLSALG+VI
Sbjct: 257 VDLAGSERQNKAGPNTAGGAATPSSGGGGGGGGSGGGAGGERPKEASKINLSLSALGNVI 316
Query: 660 ASLA-QKNPHVPYRNSKLTQLLQDSLGGQAKTLMFVHISPEPDAVGETISTLKFAERVAT 718
A+LA ++ H+PYR+SKLT+LLQDSLGG AKT+M + P + E++STL+FA R
Sbjct: 317 AALAGNRSTHIPYRDSKLTRLLQDSLGGNAKTIMVATLGPASHSYDESLSTLRFANRAKN 376
Query: 719 VELGAARVNKDSSDV 733
++ RVN+D D
Sbjct: 377 IK-NKPRVNEDPKDT 390
>pdb|1GOJ|A Chain A, Structure Of A Fast Kinesin: Implications For Atpase
Mechanism And Interactions With Microtubules
Length = 355
Score = 216 bits (551), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 139/358 (38%), Positives = 203/358 (56%), Gaps = 18/358 (5%)
Query: 394 SIRVYCRVRP-----FLSGQSNYLSTVDHIEEGNITINTPSKHGKGWKSFSFNKVYGPSA 448
SI+V R RP SG ++ +G T SK +G SF+F++V+ S
Sbjct: 7 SIKVVARFRPQNRVEIESGGQPIVTF-----QGPDTCTVDSKEAQG--SFTFDRVFDMSC 59
Query: 449 TQAEVFS-DMQPLIRSVLDGYNVCIFAYGQTGSGKTYTMTGPRELTEKSQGVNYRALSDL 507
Q+++F ++P + +L+GYN +FAYGQTG+GK+YTM G +GV R + +
Sbjct: 60 KQSDIFDFSIKPTVDDILNGYNGTVFAYGQTGAGKSYTMMGTSIDDPDGRGVIPRIVEQI 119
Query: 508 FLIAEQRKDIFRYDVAVQMLEIYNEQVRDLLVTDGSNRRLEIRNSSQTGLNVPDASLIPV 567
F Y V V +EIY E++RDLL N L + G+ V I V
Sbjct: 120 FTSILSSAANIEYTVRVSYMEIYMERIRDLLAPQNDN--LPVHEEKNRGVYVKGLLEIYV 177
Query: 568 SSTADVINLMNLGQKNRAVGATALNDRSSRSHSCLTVHVQGKDLTSGTMYRGCMHLVDLA 627
SS +V +M G RAV AT +N SSRSHS + + K++ +G+ G + LVDLA
Sbjct: 178 SSVQEVYEVMRRGGNARAVAATNMNQESSRSHSIFVITITQKNVETGSAKSGQLFLVDLA 237
Query: 628 GSERVNKSEVTGDRLKEAQHINRSLSALGDVIASLAQ-KNPHVPYRNSKLTQLLQDSLGG 686
GSE+V K+ +G L+EA+ IN+SLSALG VI +L K+ HVPYR+SKLT++LQ+SLGG
Sbjct: 238 GSEKVGKTGASGQTLEEAKKINKSLSALGMVINALTDGKSSHVPYRDSKLTRILQESLGG 297
Query: 687 QAKTLMFVHISPEPDAVGETISTLKFAERVATVELGAARVNKDSSDVKELKEQIASLK 744
++T + ++ SP ET+STL+F R +++ A+VN + S ELK+ +A K
Sbjct: 298 NSRTTLIINCSPSSYNDAETLSTLRFGMRAKSIK-NKAKVNAELSPA-ELKQMLAKAK 353
>pdb|2VVG|A Chain A, Crystal Structure Of The G.Intestinalis Kinesin 2 Gikin2a
Motor Domain
pdb|2VVG|B Chain B, Crystal Structure Of The G.Intestinalis Kinesin 2 Gikin2a
Motor Domain
Length = 350
Score = 213 bits (542), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 134/353 (37%), Positives = 201/353 (56%), Gaps = 20/353 (5%)
Query: 394 SIRVYCRVRPFLSGQS--NYLSTVDHIEEGNITINTPSKHGKGW-------KSFSFNKVY 444
+I+V R RP + ++ N L+ + E I P + K ++F+F+ VY
Sbjct: 5 NIKVIVRCRPLNARETRENALNIIRMDEASAQVIVDPPEQEKSATQAKKVPRTFTFDAVY 64
Query: 445 GPSATQAEVF-SDMQPLIRSVLDGYNVCIFAYGQTGSGKTYTMTGPRELTEKSQGVNYRA 503
++ +F + +PLI +VL+G+N IFAYGQTG+GKT+TM G +E G +
Sbjct: 65 DQTSCNYGIFQASFKPLIDAVLEGFNSTIFAYGQTGAGKTWTMGGNKE----EPGAIPNS 120
Query: 504 LSDLFLIAEQRKDIFRYDVAVQMLEIYNEQVRDLLVTDGSNRRLEIRNSSQTGLNVPDAS 563
LF + V LE+YNE++RDL+ +N +L ++ G+ V S
Sbjct: 121 FKHLFDAINSSSSNQNFLVIGSYLELYNEEIRDLI---KNNTKLPLKEDKTRGIYVDGLS 177
Query: 564 LIPVSSTADVINLMNLGQKNRAVGATALNDRSSRSHSCLTVHVQGKDLTSG--TMYRGCM 621
+ V++ A++ LM+ G NR V AT +ND SSRSHS V ++ ++ + G +
Sbjct: 178 MHRVTTAAELSALMDKGFANRHVAATQMNDTSSRSHSIFMVRIECSEVIENKEVIRVGKL 237
Query: 622 HLVDLAGSERVNKSEVTGDRLKEAQHINRSLSALGDVIASLAQKNPHVPYRNSKLTQLLQ 681
+LVDLAGSER +K+ TG+ L E IN SLSALG VI+ L + H+PYR+SKLT+LLQ
Sbjct: 238 NLVDLAGSERQSKTGATGETLVEGAKINLSLSALGLVISKLVEGATHIPYRDSKLTRLLQ 297
Query: 682 DSLGGQAKTLMFVHISPEPDAVGETISTLKFAERVATVELGAARVNKDSSDVK 734
DSLGG +KTLM +ISP ET+STL++A+R ++ R+N+D D +
Sbjct: 298 DSLGGNSKTLMCANISPASTNYDETMSTLRYADRAKQIK-NKPRINEDPKDAQ 349
>pdb|2WBE|C Chain C, Kinesin-5-Tubulin Complex With Amppnp
Length = 373
Score = 212 bits (539), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 136/342 (39%), Positives = 199/342 (58%), Gaps = 18/342 (5%)
Query: 394 SIRVYCRVRPFLSGQSNYLS--TVDHIEEGNITINTPSKHGKGWKSFSFNKVYGPSATQA 451
+I+VY RVRP S + S VD + + + + K K F+F++ +GP + Q
Sbjct: 24 NIQVYVRVRPLNSRERCIRSAEVVDVVGPREV-VTRHTLDSKLTKKFTFDRSFGPESKQC 82
Query: 452 EVFSDM-QPLIRSVLDGYNVCIFAYGQTGSGKTYTMTGPRELTEKSQ-------GVNYRA 503
+V+S + PLI VL+GYN +FAYGQTG+GKT+TM G KS G+ RA
Sbjct: 83 DVYSVVVSPLIEEVLNGYNCTVFAYGQTGTGKTHTMVGNETAELKSSWEDDSDIGIIPRA 142
Query: 504 LSDLFLIAEQRKDIFRYDVAVQMLEIYNEQVRDLLVTDGSNRRLEIRNSSQTG-LNVPDA 562
LS LF E R Y + + LE+YNE++ DLL TD + + +S++ G + +
Sbjct: 143 LSHLF--DELRMMEVEYTMRISYLELYNEELCDLLSTDDTTKIRIFDDSTKKGSVIIQGL 200
Query: 563 SLIPVSSTADVINLMNLGQKNRAVGATALNDRSSRSHSC--LTVHVQGKDLTSGTMYR-G 619
IPV S DV L+ G++ R T +N +SSRSH+ + VH++ + M + G
Sbjct: 201 EEIPVHSKDDVYKLLEKGKERRKTATTLMNAQSSRSHTVFSIVVHIRENGIEGEDMLKIG 260
Query: 620 CMHLVDLAGSERVNKS-EVTGDRLKEAQHINRSLSALGDVIASLAQKNPHVPYRNSKLTQ 678
++LVDLAGSE V+K+ G R++E +IN+SL LG VI +L + PHVPYR SKLT+
Sbjct: 261 KLNLVDLAGSENVSKAGNEKGIRVRETVNINQSLLTLGRVITALVDRAPHVPYRESKLTR 320
Query: 679 LLQDSLGGQAKTLMFVHISPEPDAVGETISTLKFAERVATVE 720
LLQ+SLGG+ KT + ISP + ET+STL++A R ++
Sbjct: 321 LLQESLGGRTKTSIIATISPGHKDIEETLSTLEYAHRAKNIQ 362
>pdb|3LRE|A Chain A, Crystal Structure Analysis Of Human Kinesin-8 Motor Domain
pdb|3LRE|B Chain B, Crystal Structure Analysis Of Human Kinesin-8 Motor Domain
Length = 355
Score = 211 bits (536), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 133/357 (37%), Positives = 200/357 (56%), Gaps = 33/357 (9%)
Query: 389 QDLKGSIRVYCRVRPFLSGQSNY-LSTVDHIEEGNITINTPSK------HGKGWKS---- 437
+DL ++V RVRP + + V H+ + +I + P + HGK +
Sbjct: 6 EDLCHHMKVVVRVRPENTKEKAAGFHKVVHVVDKHILVFDPKQEEVSFFHGKKTTNQNVI 65
Query: 438 --------FSFNKVYGPSATQAEVFSDM-QPLIRSVLDGYNVCIFAYGQTGSGKTYTMTG 488
F F+ V+ ++TQ+EVF +P++RS L+GYN + AYG TG+GKT+TM G
Sbjct: 66 KKQNKDLKFVFDAVFDETSTQSEVFEHTTKPILRSFLNGYNCTVLAYGATGAGKTHTMLG 125
Query: 489 PRELTEKSQGVNYRALSDLFLIAEQRKDIFRYDVAVQMLEIYNEQVRDLLVTDGSNRRLE 548
+ GV Y + L+ ++ K+ AV LE+YNEQ+RDLLV G L
Sbjct: 126 SAD----EPGVMYLTMLHLYKCMDEIKEEKICSTAVSYLEVYNEQIRDLLVNSGP---LA 178
Query: 549 IRNSSQTGLNVPDASLIPVSSTADVINLMNLGQKNRAVGATALNDRSSRSHSCLTVHVQG 608
+R +Q G+ V +L S+ ++++L++ G KNR T +N SSRSH+ ++++
Sbjct: 179 VREDTQKGVVVHGLTLHQPKSSEEILHLLDNGNKNRTQHPTDMNATSSRSHAVFQIYLRQ 238
Query: 609 KDLTSGT---MYRGCMHLVDLAGSERVNKSEVTGDRLKEAQHINRSLSALGDVIASLA-- 663
+D T+ + M L+DLAGSER + S G R E +INRSL ALG+VI +LA
Sbjct: 239 QDKTASINQNVRIAKMSLIDLAGSERASTSGAKGTRFVEGTNINRSLLALGNVINALADS 298
Query: 664 -QKNPHVPYRNSKLTQLLQDSLGGQAKTLMFVHISPEPDAVGETISTLKFAERVATV 719
+KN H+PYRNSKLT+LL+DSLGG +T+M +SP +T +TLK+A R +
Sbjct: 299 KRKNQHIPYRNSKLTRLLKDSLGGNCQTIMIAAVSPSSVFYDDTYNTLKYANRAKDI 355
>pdb|2Y5W|A Chain A, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer
pdb|2Y5W|B Chain B, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer
pdb|2Y65|A Chain A, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
pdb|2Y65|B Chain B, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
pdb|2Y65|C Chain C, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
pdb|2Y65|D Chain D, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
Length = 365
Score = 209 bits (531), Expect = 8e-54, Method: Compositional matrix adjust.
Identities = 131/334 (39%), Positives = 196/334 (58%), Gaps = 18/334 (5%)
Query: 394 SIRVYCRVRPF-----LSGQSNYLSTVDHIEEGNITINTPSKHGKGWKSFSFNKVYGPSA 448
SI+V CR RP +G + +++EE I+I K + F+KV+ P+A
Sbjct: 12 SIKVVCRFRPLNDSEEKAGSKFVVKFPNNVEENCISI--------AGKVYLFDKVFKPNA 63
Query: 449 TQAEVFSDM-QPLIRSVLDGYNVCIFAYGQTGSGKTYTMTGPRELTEKSQGVNYRALSDL 507
+Q +V+++ + ++ VL GYN IFAYGQT SGKT+TM G + K QG+ R ++D+
Sbjct: 64 SQEKVYNEAAKSIVTDVLAGYNGTIFAYGQTSSGKTHTMEGVIGDSVK-QGIIPRIVNDI 122
Query: 508 FLIAEQRKDIFRYDVAVQMLEIYNEQVRDLLVTDGSNRRLEIRNSSQTGLNVPDASLIPV 567
F + + + V EIY +++RDLL D S L + V A+ V
Sbjct: 123 FNHIYAMEVNLEFHIKVSYYEIYMDKIRDLL--DVSKVNLSVHEDKNRVPYVKGATERFV 180
Query: 568 SSTADVINLMNLGQKNRAVGATALNDRSSRSHSCLTVHVQGKDLTSGTMYRGCMHLVDLA 627
SS DV ++ G+ NR + T +N+ SSRSHS ++V+ ++L + G ++LVDLA
Sbjct: 181 SSPEDVFEVIEEGKSNRHIAVTNMNEHSSRSHSVFLINVKQENLENQKKLSGKLYLVDLA 240
Query: 628 GSERVNKSEVTGDRLKEAQHINRSLSALGDVIASLAQKN-PHVPYRNSKLTQLLQDSLGG 686
GSE+V+K+ G L EA++IN+SLSALG+VI++LA N H+PYR+SKLT++LQ+SLGG
Sbjct: 241 GSEKVSKTGAEGTVLDEAKNINKSLSALGNVISALADGNKTHIPYRDSKLTRILQESLGG 300
Query: 687 QAKTLMFVHISPEPDAVGETISTLKFAERVATVE 720
A+T + + SP ET STL F R TV+
Sbjct: 301 NARTTIVICCSPASFNESETKSTLDFGRRAKTVK 334
>pdb|3GBJ|A Chain A, Crystal Structure Of The Motor Domain Of Kinesin Kif13b
Bound With Adp
pdb|3GBJ|B Chain B, Crystal Structure Of The Motor Domain Of Kinesin Kif13b
Bound With Adp
pdb|3GBJ|C Chain C, Crystal Structure Of The Motor Domain Of Kinesin Kif13b
Bound With Adp
Length = 354
Score = 207 bits (528), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 127/280 (45%), Positives = 173/280 (61%), Gaps = 16/280 (5%)
Query: 448 ATQAEVFSDM-QPLIRSVLDGYNVCIFAYGQTGSGKTYTMTGPRELTEKSQGVNYRALSD 506
A Q VF + + ++++ DGYN CIFAYGQTGSGK+YTM G T G+ R S
Sbjct: 71 AGQDIVFKCLGENILQNAFDGYNACIFAYGQTGSGKSYTMMG----TADQPGLIPRLCSG 126
Query: 507 LFLIAEQRKDIFR-YDVAVQMLEIYNEQVRDLLVTDGSNRRLEIRNSSQTGLNVPDASLI 565
LF ++ ++ + + V V +EIYNE+VRDLL GS + L++R S G V S +
Sbjct: 127 LFERTQKEENEEQSFKVEVSYMEIYNEKVRDLLDPKGSRQTLKVREHSVLGPYVDGLSKL 186
Query: 566 PVSSTADVINLMNLGQKNRAVGATALNDRSSRSHSCLTVHVQGK--DLTSGTMYR--GCM 621
V+S D+ +LM+ G K+R V AT +N+ SSRSH+ + + D+ SGT G +
Sbjct: 187 AVTSYKDIESLMSEGNKSRTVAATNMNEESSRSHAVFKITLTHTLYDVKSGTSGEKVGKL 246
Query: 622 HLVDLAGSERVNKSEVTGDRLKEAQHINRSLSALGDVIASLA------QKNPHVPYRNSK 675
LVDLAGSER K+ GDRLKE +IN+SL+ LG VI++LA KN VPYR+S
Sbjct: 247 SLVDLAGSERATKTGAAGDRLKEGSNINKSLTTLGLVISALADQSAGKNKNKFVPYRDSV 306
Query: 676 LTQLLQDSLGGQAKTLMFVHISPEPDAVGETISTLKFAER 715
LT LL+DSLGG +KT M +SP D ET+STL++A+R
Sbjct: 307 LTWLLKDSLGGNSKTAMVATVSPAADNYDETLSTLRYADR 346
>pdb|4A14|A Chain A, Human Kif7, A Kinesin Involved In Hedgehog Signalling
Length = 344
Score = 202 bits (515), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 126/340 (37%), Positives = 189/340 (55%), Gaps = 29/340 (8%)
Query: 395 IRVYCRVRPFL-----SGQSNYLSTVDHIEEGNITINTPSKHGKGWKSFSFNKVYGPSAT 449
+RV RVRP L G + L + G +T+ + F F+ V A
Sbjct: 13 VRVALRVRPLLPKELLHGHQSCLQVEPGL--GRVTLGRD-------RHFGFHVVLAEDAG 63
Query: 450 QAEVF-SDMQPLIRSVLDGYNVCIFAYGQTGSGKTYTM--TGPRELTEKSQGVNYRALSD 506
Q V+ + +QPL+ + +G+N +FAYGQTGSGKTYTM L E QG+ RA+++
Sbjct: 64 QEAVYQACVQPLLEAFFEGFNATVFAYGQTGSGKTYTMGEASVASLLEDEQGIVPRAMAE 123
Query: 507 LFLIAEQRKDIFRYDVAVQMLEIYNEQVRDLLVTDGSNRRLEIRNSSQTGLNVPDASLIP 566
F + ++ D+ V V LE+Y E+ RDLL ++R +++R + + + +
Sbjct: 124 AFKLIDE-NDLLDCLVHVSYLEVYKEEFRDLLEVGTASRDIQLREDERGNVVLCGVKEVD 182
Query: 567 VSSTADVINLMNLGQKNRAVGATALNDRSSRSHSCLTVHVQGKDLTSGTMYRGC------ 620
V +V++L+ +G R GAT LN SSRSH+ TV ++ + + R
Sbjct: 183 VEGLDEVLSLLEMGNAARHTGATHLNHLSSRSHTVFTVTLEQRGRAPSRLPRPAPGQLLV 242
Query: 621 --MHLVDLAGSERVNKSEVTGDRLKEAQHINRSLSALGDVIASLA---QKNPHVPYRNSK 675
H VDLAGSERV K+ TG+RLKE+ IN SL ALG+VI++L ++ H+PYR+SK
Sbjct: 243 SKFHFVDLAGSERVLKTGSTGERLKESIQINSSLLALGNVISALGDPQRRGSHIPYRDSK 302
Query: 676 LTQLLQDSLGGQAKTLMFVHISPEPDAVGETISTLKFAER 715
+T++L+DSLGG AKT+M +SP ET++TL +A R
Sbjct: 303 ITRILKDSLGGNAKTVMIACVSPSSSDFDETLNTLNYASR 342
>pdb|1IA0|K Chain K, Kif1a Head-Microtubule Complex Structure In Atp-Form
pdb|2HXF|C Chain C, Kif1a Head-Microtubule Complex Structure In Amppnp-Form
pdb|2HXH|C Chain C, Kif1a Head-Microtubule Complex Structure In Adp-Form
Length = 394
Score = 201 bits (512), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 134/357 (37%), Positives = 201/357 (56%), Gaps = 36/357 (10%)
Query: 393 GSIRVYCRVRPFLSGQSNYLS-TVDHIEEGNITINTPSKHGKGWKSFSFNKVY----GPS 447
S++V RVRPF S + + S + + TI P + + KSFSF+ Y P
Sbjct: 20 ASVKVAVRVRPFNSREMSRDSKCIIQMSGSTTTIVNPKQPKETPKSFSFDYSYWSHTSPE 79
Query: 448 ----ATQAEVFSDM-QPLIRSVLDGYNVCIFAYGQTGSGKTYTMTGPRELTEKSQGVNYR 502
A+Q +V+ D+ + +++ +GYNVCIFAYGQTG+GK+YTM G +E + QG+ +
Sbjct: 80 DINYASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTMMGKQE--KDQQGIIPQ 137
Query: 503 ALSDLF-LIAEQRKDIFRYDVAVQMLEIYNEQVRDLLVTDGSNR-RLEIRNSSQTGLNVP 560
DLF I + D Y V V +EIY E+VRDLL + N+ L +R G V
Sbjct: 138 LCEDLFSRINDTTNDNMSYSVEVSYMEIYCERVRDLL--NPKNKGNLRVREHPLLGPYVE 195
Query: 561 DASLIPVSSTADVINLMNLGQKNRAVGATALNDRSSRSHSCLTV------HVQGKDLTSG 614
D S + V+S D+ +LM+ G K R V AT +N+ SSRSH+ + H ++T+
Sbjct: 196 DLSKLAVTSYNDIQDLMDSGNKARTVAATNMNETSSRSHAVFNIIFTQKRHDAETNITTE 255
Query: 615 TMYRGCMHLVDLAGSERVNKSEVTGDRLKEAQHINRSLSALGDVIASLAQKNP------- 667
+ + + LVDLAGSER + + G RLKE +IN+SL+ LG VI++LA+ +
Sbjct: 256 KVSK--ISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEMDSGPNKNKK 313
Query: 668 -----HVPYRNSKLTQLLQDSLGGQAKTLMFVHISPEPDAVGETISTLKFAERVATV 719
+PYR+S LT LL+++LGG ++T M +SP ET+STL++A+R +
Sbjct: 314 KKKTDFIPYRDSVLTWLLRENLGGNSRTAMVAALSPADINYDETLSTLRYADRAKQI 370
>pdb|1I5S|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Adp
Length = 367
Score = 201 bits (511), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 134/357 (37%), Positives = 201/357 (56%), Gaps = 36/357 (10%)
Query: 393 GSIRVYCRVRPFLSGQSNYLS-TVDHIEEGNITINTPSKHGKGWKSFSFNKVY----GPS 447
S++V RVRPF S + + S + + TI P + + KSFSF+ Y P
Sbjct: 4 ASVKVAVRVRPFNSREMSRDSKCIIQMSGSTTTIVNPKQPKETPKSFSFDYSYWSHTSPE 63
Query: 448 ----ATQAEVFSDM-QPLIRSVLDGYNVCIFAYGQTGSGKTYTMTGPRELTEKSQGVNYR 502
A+Q +V+ D+ + +++ +GYNVCIFAYGQTG+GK+YTM G +E + QG+ +
Sbjct: 64 DINYASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTMMGKQE--KDQQGIIPQ 121
Query: 503 ALSDLF-LIAEQRKDIFRYDVAVQMLEIYNEQVRDLLVTDGSNR-RLEIRNSSQTGLNVP 560
DLF I + D Y V V +EIY E+VRDLL + N+ L +R G V
Sbjct: 122 LCEDLFSRINDTTNDNMSYSVEVSYMEIYCERVRDLL--NPKNKGNLRVREHPLLGPYVE 179
Query: 561 DASLIPVSSTADVINLMNLGQKNRAVGATALNDRSSRSHSCLTV------HVQGKDLTSG 614
D S + V+S D+ +LM+ G K R V AT +N+ SSRSH+ + H ++T+
Sbjct: 180 DLSKLAVTSYNDIQDLMDSGNKARTVAATNMNETSSRSHAVFNIIFTQKRHDAETNITTE 239
Query: 615 TMYRGCMHLVDLAGSERVNKSEVTGDRLKEAQHINRSLSALGDVIASLAQKNP------- 667
+ + + LVDLAGSER + + G RLKE +IN+SL+ LG VI++LA+ +
Sbjct: 240 KVSK--ISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEMDSGPNKNKK 297
Query: 668 -----HVPYRNSKLTQLLQDSLGGQAKTLMFVHISPEPDAVGETISTLKFAERVATV 719
+PYR+S LT LL+++LGG ++T M +SP ET+STL++A+R +
Sbjct: 298 KKKTDFIPYRDSVLTWLLRENLGGNSRTAMVAALSPADINYDETLSTLRYADRAKQI 354
>pdb|3BFN|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 22
Length = 388
Score = 201 bits (510), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 133/332 (40%), Positives = 191/332 (57%), Gaps = 14/332 (4%)
Query: 395 IRVYCRVRPFLSGQSNYLS--TVDHIEEGNITINTPSKHGKGWKSFSFNKVYGPSATQAE 452
+RV R+RPF+ G + V ++ ++ I H + K + F+ YG +TQ +
Sbjct: 23 VRVAVRLRPFVDGTAGASDPPCVRGMDSCSLEIANWRNHQETLK-YQFDAFYGERSTQQD 81
Query: 453 VFS-DMQPLIRSVLDGYNVCIFAYGQTGSGKTYTMTGPRELTEKSQGVNYRALSDLF-LI 510
+++ +QP++R +L+G N + AYG TG+GKT+TM G + + GV RAL DL L
Sbjct: 82 IYAGSVQPILRHLLEGQNASVLAYGPTGAGKTHTMLG----SPEQPGVIPRALMDLLQLT 137
Query: 511 AEQRKDIFRYDVAVQM--LEIYNEQVRDLLVTDGSNRRLEIRNSSQTGLNVPDASLIPVS 568
E+ + + ++V M LEIY E+V DLL D ++ L IR + + +P S P+S
Sbjct: 138 REEGAEGRPWALSVTMSYLEIYQEKVLDLL--DPASGDLVIREDCRGNILIPGLSQKPIS 195
Query: 569 STADVINLMNLGQKNRAVGATALNDRSSRSHSCLTVHV-QGKDLTSGTMYRGCMHLVDLA 627
S AD +NR VGAT LN RSSRSH+ L V V Q + L G ++L+DLA
Sbjct: 196 SFADFERHFLPASRNRTVGATRLNQRSSRSHAVLLVKVDQRERLAPFRQREGKLYLIDLA 255
Query: 628 GSERVNKSEVTGDRLKEAQHINRSLSALGDVIASLAQKNPHVPYRNSKLTQLLQDSLGGQ 687
GSE ++ G RLKE+ IN SL LG V+ +L Q P VPYR+SKLT+LLQDSLGG
Sbjct: 256 GSEDNRRTGNKGLRLKESGAINTSLFVLGKVVDALNQGLPRVPYRDSKLTRLLQDSLGGS 315
Query: 688 AKTLMFVHISPEPDAVGETISTLKFAERVATV 719
A +++ +I+PE +T+S L FA R V
Sbjct: 316 AHSILIANIAPERRFYLDTVSALNFAARSKEV 347
>pdb|1I6I|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Amppcp
Length = 366
Score = 201 bits (510), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 134/357 (37%), Positives = 201/357 (56%), Gaps = 36/357 (10%)
Query: 393 GSIRVYCRVRPFLSGQSNYLS-TVDHIEEGNITINTPSKHGKGWKSFSFNKVY----GPS 447
S++V RVRPF S + + S + + TI P + + KSFSF+ Y P
Sbjct: 4 ASVKVAVRVRPFNSREMSRDSKCIIQMSGSTTTIVNPKQPKETPKSFSFDYSYWSHTSPE 63
Query: 448 ----ATQAEVFSDM-QPLIRSVLDGYNVCIFAYGQTGSGKTYTMTGPRELTEKSQGVNYR 502
A+Q +V+ D+ + +++ +GYNVCIFAYGQTG+GK+YTM G +E + QG+ +
Sbjct: 64 DINYASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTMMGKQE--KDQQGIIPQ 121
Query: 503 ALSDLF-LIAEQRKDIFRYDVAVQMLEIYNEQVRDLLVTDGSNR-RLEIRNSSQTGLNVP 560
DLF I + D Y V V +EIY E+VRDLL + N+ L +R G V
Sbjct: 122 LCEDLFSRINDTTNDNMSYSVEVSYMEIYCERVRDLL--NPKNKGNLRVREHPLLGPYVE 179
Query: 561 DASLIPVSSTADVINLMNLGQKNRAVGATALNDRSSRSHSCLTV------HVQGKDLTSG 614
D S + V+S D+ +LM+ G K R V AT +N+ SSRSH+ + H ++T+
Sbjct: 180 DLSKLAVTSYNDIQDLMDSGNKARTVAATNMNETSSRSHAVFNIIFTQKRHDAETNITTE 239
Query: 615 TMYRGCMHLVDLAGSERVNKSEVTGDRLKEAQHINRSLSALGDVIASLAQKNP------- 667
+ + + LVDLAGSER + + G RLKE +IN+SL+ LG VI++LA+ +
Sbjct: 240 KVSK--ISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEMDSGPNKNKK 297
Query: 668 -----HVPYRNSKLTQLLQDSLGGQAKTLMFVHISPEPDAVGETISTLKFAERVATV 719
+PYR+S LT LL+++LGG ++T M +SP ET+STL++A+R +
Sbjct: 298 KKKTDFIPYRDSVLTWLLRENLGGNSRTAMVAALSPADINYDETLSTLRYADRAKQI 354
>pdb|1MKJ|A Chain A, Human Kinesin Motor Domain With Docked Neck Linker
Length = 349
Score = 201 bits (510), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 122/332 (36%), Positives = 193/332 (58%), Gaps = 18/332 (5%)
Query: 394 SIRVYCRVRPFLSGQSN----YLSTVDHIEEGNITINTPSKHGKGWKSFSFNKVYGPSAT 449
+I+V CR RP + N Y++ +G T+ SK ++F++V+ S +
Sbjct: 8 NIKVMCRFRPLNESEVNRGDKYIAKF----QGEDTVVIASK------PYAFDRVFQSSTS 57
Query: 450 QAEVFSDM-QPLIRSVLDGYNVCIFAYGQTGSGKTYTMTGPRELTEKSQGVNYRALSDLF 508
Q +V++D + +++ VL+GYN IFAYGQT SGKT+TM G E G+ R + D+F
Sbjct: 58 QEQVYNDCAKKIVKDVLEGYNGTIFAYGQTSSGKTHTMEGKLHDPE-GMGIIPRIVQDIF 116
Query: 509 LIAEQRKDIFRYDVAVQMLEIYNEQVRDLLVTDGSNRRLEIRNSSQTGLNVPDASLIPVS 568
+ + + V EIY +++RDLL D S L + V + V
Sbjct: 117 NYIYSMDENLEFHIKVSYFEIYLDKIRDLL--DVSKTNLSVHEDKNRVPYVKGCTERFVC 174
Query: 569 STADVINLMNLGQKNRAVGATALNDRSSRSHSCLTVHVQGKDLTSGTMYRGCMHLVDLAG 628
S +V++ ++ G+ NR V T +N+ SSRSHS ++V+ ++ + G ++LVDLAG
Sbjct: 175 SPDEVMDTIDEGKSNRHVAVTNMNEHSSRSHSIFLINVKQENTQTEQKLSGKLYLVDLAG 234
Query: 629 SERVNKSEVTGDRLKEAQHINRSLSALGDVIASLAQKNPHVPYRNSKLTQLLQDSLGGQA 688
SE+V+K+ G L EA++IN+SLSALG+VI++LA+ + +VPYR+SK+T++LQDSLGG
Sbjct: 235 SEKVSKTGAEGAVLDEAKNINKSLSALGNVISALAEGSTYVPYRDSKMTRILQDSLGGNC 294
Query: 689 KTLMFVHISPEPDAVGETISTLKFAERVATVE 720
+T + + SP ET STL F +R T++
Sbjct: 295 RTTIVICCSPSSYNESETKSTLLFGQRAKTIK 326
>pdb|1VFV|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Amppnp
pdb|1VFW|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Amppnp
pdb|1VFX|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Adp-mg-alfx
pdb|1VFZ|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Adp-Mg-Vo4
pdb|2ZFI|A Chain A, Crystal Structure Of The Kif1a Motor Domain Before Mg
Release
pdb|2ZFJ|A Chain A, Crystal Structure Of The Kif1a Motor Domain During Mg
Release: Mg-Releasing Transition-1
pdb|2ZFK|A Chain A, Crystal Structure Of The Kif1a Motor Domain During Mg
Release: Mg-Releasing Transition-2
pdb|2ZFL|A Chain A, Crystal Structure Of The Kif1a Motor Domain During Mg
Release: Mg-Releasing Transition-3
pdb|2ZFM|A Chain A, Crystal Structure Of The Kif1a Motor Domain After Mg
Release
Length = 366
Score = 200 bits (509), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 134/357 (37%), Positives = 201/357 (56%), Gaps = 36/357 (10%)
Query: 393 GSIRVYCRVRPFLSGQSNYLS-TVDHIEEGNITINTPSKHGKGWKSFSFNKVY----GPS 447
S++V RVRPF S + + S + + TI P + + KSFSF+ Y P
Sbjct: 4 ASVKVAVRVRPFNSREMSRDSKCIIQMSGSTTTIVNPKQPKETPKSFSFDYSYWSHTSPE 63
Query: 448 ----ATQAEVFSDM-QPLIRSVLDGYNVCIFAYGQTGSGKTYTMTGPRELTEKSQGVNYR 502
A+Q +V+ D+ + +++ +GYNVCIFAYGQTG+GK+YTM G +E + QG+ +
Sbjct: 64 DINYASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTMMGKQE--KDQQGIIPQ 121
Query: 503 ALSDLF-LIAEQRKDIFRYDVAVQMLEIYNEQVRDLLVTDGSNR-RLEIRNSSQTGLNVP 560
DLF I + D Y V V +EIY E+VRDLL + N+ L +R G V
Sbjct: 122 LCEDLFSRINDTTNDNMSYSVEVSYMEIYCERVRDLL--NPKNKGNLRVREHPLLGPYVE 179
Query: 561 DASLIPVSSTADVINLMNLGQKNRAVGATALNDRSSRSHSCLTV------HVQGKDLTSG 614
D S + V+S D+ +LM+ G K R V AT +N+ SSRSH+ + H ++T+
Sbjct: 180 DLSKLAVTSYNDIQDLMDSGNKPRTVAATNMNETSSRSHAVFNIIFTQKRHDAETNITTE 239
Query: 615 TMYRGCMHLVDLAGSERVNKSEVTGDRLKEAQHINRSLSALGDVIASLAQKNP------- 667
+ + + LVDLAGSER + + G RLKE +IN+SL+ LG VI++LA+ +
Sbjct: 240 KVSK--ISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEMDSGPNKNKK 297
Query: 668 -----HVPYRNSKLTQLLQDSLGGQAKTLMFVHISPEPDAVGETISTLKFAERVATV 719
+PYR+S LT LL+++LGG ++T M +SP ET+STL++A+R +
Sbjct: 298 KKKTDFIPYRDSVLTWLLRENLGGNSRTAMVAALSPADINYDETLSTLRYADRAKQI 354
>pdb|1BG2|A Chain A, Human Ubiquitous Kinesin Motor Domain
pdb|2P4N|K Chain K, Human Monomeric Kinesin (1bg2) And Bovine Tubulin (1jff)
Docked Into The 9-Angstrom Cryo-Em Map Of
Nucleotide-Free Kinesin Complexed To The Microtubule
Length = 325
Score = 200 bits (509), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 122/330 (36%), Positives = 191/330 (57%), Gaps = 18/330 (5%)
Query: 395 IRVYCRVRPFLSGQSN----YLSTVDHIEEGNITINTPSKHGKGWKSFSFNKVYGPSATQ 450
I+V CR RP + N Y++ +G T+ SK ++F++V+ S +Q
Sbjct: 9 IKVMCRFRPLNESEVNRGDKYIAKF----QGEDTVVIASK------PYAFDRVFQSSTSQ 58
Query: 451 AEVFSDM-QPLIRSVLDGYNVCIFAYGQTGSGKTYTMTGPRELTEKSQGVNYRALSDLFL 509
+V++D + +++ VL+GYN IFAYGQT SGKT+TM G E G+ R + D+F
Sbjct: 59 EQVYNDCAKKIVKDVLEGYNGTIFAYGQTSSGKTHTMEGKLHDPE-GMGIIPRIVQDIFN 117
Query: 510 IAEQRKDIFRYDVAVQMLEIYNEQVRDLLVTDGSNRRLEIRNSSQTGLNVPDASLIPVSS 569
+ + + V EIY +++RDLL D S L + V + V S
Sbjct: 118 YIYSMDENLEFHIKVSYFEIYLDKIRDLL--DVSKTNLSVHEDKNRVPYVKGCTERFVCS 175
Query: 570 TADVINLMNLGQKNRAVGATALNDRSSRSHSCLTVHVQGKDLTSGTMYRGCMHLVDLAGS 629
+V++ ++ G+ NR V T +N+ SSRSHS ++V+ ++ + G ++LVDLAGS
Sbjct: 176 PDEVMDTIDEGKSNRHVAVTNMNEHSSRSHSIFLINVKQENTQTEQKLSGKLYLVDLAGS 235
Query: 630 ERVNKSEVTGDRLKEAQHINRSLSALGDVIASLAQKNPHVPYRNSKLTQLLQDSLGGQAK 689
E+V+K+ G L EA++IN+SLSALG+VI++LA+ + +VPYR+SK+T++LQDSLGG +
Sbjct: 236 EKVSKTGAEGAVLDEAKNINKSLSALGNVISALAEGSTYVPYRDSKMTRILQDSLGGNCR 295
Query: 690 TLMFVHISPEPDAVGETISTLKFAERVATV 719
T + + SP ET STL F +R T+
Sbjct: 296 TTIVICCSPSSYNESETKSTLLFGQRAKTI 325
>pdb|4ATX|C Chain C, Rigor Kinesin Motor Domain With An Ordered Neck-Linker,
Docked On Tubulin Dimer, Modelled Into The 8a Cryo-Em
Map Of Doublecortin-Microtubules Decorated With Kinesin
Length = 340
Score = 199 bits (506), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 120/328 (36%), Positives = 189/328 (57%), Gaps = 10/328 (3%)
Query: 394 SIRVYCRVRPFLSGQSNYLSTVDHIEEGNITINTPSKHGKGWKSFSFNKVYGPSATQAEV 453
+I+V CR RP + N +G T+ SK ++F++V+ S +Q +V
Sbjct: 8 NIKVMCRFRPLNESEVNRGDKYVAKFQGEDTVMIASK------PYAFDRVFQSSTSQEQV 61
Query: 454 FSDM-QPLIRSVLDGYNVCIFAYGQTGSGKTYTMTGPRELTEKSQGVNYRALSDLFLIAE 512
++D + +++ VL+GYN IFAYGQT SGK +TM G E G+ R + D+F
Sbjct: 62 YNDCAKKIVKDVLEGYNGTIFAYGQTSSGKNHTMEGKLHDPE-GMGIIPRIVQDIFNYIY 120
Query: 513 QRKDIFRYDVAVQMLEIYNEQVRDLLVTDGSNRRLEIRNSSQTGLNVPDASLIPVSSTAD 572
+ + + V EIY +++RDLL D S L + V + V S +
Sbjct: 121 SMDENLEFHIKVSYFEIYLDKIRDLL--DVSKTNLSVHEDKNRVPYVKGCTERFVCSPDE 178
Query: 573 VINLMNLGQKNRAVGATALNDRSSRSHSCLTVHVQGKDLTSGTMYRGCMHLVDLAGSERV 632
V++ ++ G+ NR V T +N+ SSRSHS ++V+ ++ + G ++LVDLAGSE+V
Sbjct: 179 VMDTIDEGKSNRHVAVTNMNEHSSRSHSIFLINVKQENTQTEQKLSGKLYLVDLAGSEKV 238
Query: 633 NKSEVTGDRLKEAQHINRSLSALGDVIASLAQKNPHVPYRNSKLTQLLQDSLGGQAKTLM 692
+K+ G L EA++IN+SLSALG+VI++LA+ + +VPYR+SK+T++LQDSLGG +T +
Sbjct: 239 SKTGAEGAVLDEAKNINKSLSALGNVISALAEGSTYVPYRDSKMTRILQDSLGGNCRTTI 298
Query: 693 FVHISPEPDAVGETISTLKFAERVATVE 720
+ SP ET STL F +R T++
Sbjct: 299 VICCSPSSYNESETKSTLLFGQRAKTIK 326
>pdb|2OWM|A Chain A, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
pdb|2OWM|B Chain B, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
pdb|2OWM|C Chain C, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
pdb|2OWM|D Chain D, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
Length = 443
Score = 193 bits (491), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 133/348 (38%), Positives = 182/348 (52%), Gaps = 46/348 (13%)
Query: 436 KSFSFNKVYGPSATQAEVFSDMQPLIRSV--------LDGYNVCIFAYGQTGSGKTYTMT 487
KSF+F+K + T+ E ++ + + S+ +GY+ CIFAYGQTGSGK+YTM
Sbjct: 96 KSFTFDKSFWSHNTEDEHYATQEHVYDSLGEEFLDHNFEGYHTCIFAYGQTGSGKSYTMM 155
Query: 488 GPRELTEKSQGVNYRALSDLF-LIAEQRKDI--FRYDVAVQMLEIYNEQVRDLLVTDGSN 544
G T G+ R DLF IA + + Y+V V E+YNE VRDLL N
Sbjct: 156 G----TPDQPGLIPRTCEDLFQRIASAQDETPNISYNVKVSYFEVYNEHVRDLLAPVVPN 211
Query: 545 R---RLEIRNSSQTGLNVPDASLIPVSSTADVINLMNLGQKNRAVGATALNDRSSRSHSC 601
+ L++R S G V D + +PV ++I M +G +R V +T +ND SSRSH+
Sbjct: 212 KPPYYLKVRESPTEGPYVKDLTEVPVRGLEEIIRWMRIGDGSRTVASTKMNDTSSRSHAV 271
Query: 602 LTVHVQ--GKDL-TSGTMYRGC-MHLVDLAGSERVNKSEVTGDRLKEAQHINRSLSALGD 657
T+ ++ DL T T R + LVDLAGSER +E TG RL+E +IN+SL+ LG
Sbjct: 272 FTIMLKQIHHDLETDDTTERSSRIRLVDLAGSERAKSTEATGQRLREGSNINKSLTTLGR 331
Query: 658 VIASLAQ----------------------KNPHVPYRNSKLTQLLQDSLGGQAKTLMFVH 695
VIA+LA N VPYR+S LT LL+DSLGG +KT M
Sbjct: 332 VIAALADPKSSASRPSSPVKSGRGRTPGPANSVVPYRDSVLTWLLKDSLGGNSKTAMIAC 391
Query: 696 ISPEPDAVGETISTLKFAERVATVELGAARVNKDSSDVKELKEQIASL 743
ISP ET+STL++A++ + A D E QI S+
Sbjct: 392 ISPT--DYDETLSTLRYADQAKRIRTRAVVNQVDGVSAAERDAQIPSI 437
>pdb|2XT3|A Chain A, Human Kif7, A Kinesin Involved In Hedgehog Signalling
Length = 344
Score = 193 bits (491), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 123/340 (36%), Positives = 187/340 (55%), Gaps = 29/340 (8%)
Query: 395 IRVYCRVRPFL-----SGQSNYLSTVDHIEEGNITINTPSKHGKGWKSFSFNKVYGPSAT 449
+RV RVRP L G + L + G +T+ + F F+ V A
Sbjct: 13 VRVALRVRPLLPKELLHGHQSCLQVEPGL--GRVTLGRD-------RHFGFHVVLAEDAG 63
Query: 450 QAEVF-SDMQPLIRSVLDGYNVCIFAYGQTGSGKTYTM--TGPRELTEKSQGVNYRALSD 506
Q V+ + +QPL+ + +G+N +FAYGQTGSGKTYTM L E QG+ RA+++
Sbjct: 64 QEAVYQACVQPLLEAFFEGFNATVFAYGQTGSGKTYTMGEASVASLLEDEQGIVPRAMAE 123
Query: 507 LFLIAEQRKDIFRYDVAVQMLEIYNEQVRDLLVTDGSNRRLEIRNSSQTGLNVPDASLIP 566
F + ++ D+ V V LE+Y E+ RDLL ++R +++R + + + +
Sbjct: 124 AFKLIDE-NDLLDCLVHVSYLEVYKEEFRDLLEVGTASRDIQLREDERGNVVLCGVKEVD 182
Query: 567 VSSTADVINLMNLGQKNRAVGATALNDRSSRSHSCLTVHVQGKDLTSGTMYRGC------ 620
V +V++L+ +G R GAT LN SSRSH+ TV ++ + + R
Sbjct: 183 VEGLDEVLSLLEMGNAARHTGATHLNHLSSRSHTVFTVTLKQRGRAPSRLPRPAPGQLLV 242
Query: 621 --MHLVDLAGSERVNKSEVTGDRLKEAQHINRSLSALGDVIASLA---QKNPHVPYRNSK 675
H VDLAGSERV K+ TG+ KE+ IN SL ALG+VI++L ++ ++PYR+SK
Sbjct: 243 SKFHFVDLAGSERVLKTGSTGELRKESIQINSSLLALGNVISALGDPQRRGSNIPYRDSK 302
Query: 676 LTQLLQDSLGGQAKTLMFVHISPEPDAVGETISTLKFAER 715
+T++L+DSLGG AKT+M +SP ET++TL +A R
Sbjct: 303 ITRILKDSLGGNAKTVMIACVSPSSSDFDETLNTLNYASR 342
>pdb|4AQV|C Chain C, Model Of Human Kinesin-5 Motor Domain (3hqd) And Mammalian
Tubulin Heterodimer (1jff) Docked Into The 9.7-angstrom
Cryo-em Map Of Microtubule-bound Kinesin-5 Motor Domain
In The Ampppnp State.
pdb|4AQW|C Chain C, Model Of Human Kinesin-5 Motor Domain (1ii6, 3hqd) And
Mammalian Tubulin Heterodimer (1jff) Docked Into The
9.5- Angstrom Cryo-em Map Of Microtubule-bound Kinesin-5
Motor Domain In The Rigor State
Length = 373
Score = 191 bits (485), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 126/345 (36%), Positives = 194/345 (56%), Gaps = 24/345 (6%)
Query: 395 IRVYCRVRPF----LSGQSNYLSTVDHIEEGNITINTPSKHGKG-WKSFSFNKVYGPSAT 449
I+V RVRPF ++ + D + + +++ T K K+++F+ V+G S
Sbjct: 19 IQVVVRVRPFNLAERKASAHSIVESDPVRK-EVSVRTGGLADKSSRKTYTFDMVFGASTK 77
Query: 450 QAEVF-SDMQPLIRSVLDGYNVCIFAYGQTGSGKTYTMTGPRELTEKS-------QGVNY 501
Q +V+ S + P++ V+ GYN IFAYGQTG+GKT+TM G R E+ G+
Sbjct: 78 QIDVYRSVVAPILDEVIMGYNATIFAYGQTGTGKTFTMEGERSPNEEYCWEEDPLAGIIP 137
Query: 502 RALSDLFLIAEQRKDI-FRYDVAVQMLEIYNEQVRDLL-VTDGSNRRLEIRNS--SQTGL 557
R L +F E+ D + V V +LEIYNE++ DLL + + RL++ + ++ G+
Sbjct: 138 RTLHQIF---EKLTDNGTEFSVKVSLLEIYNEELFDLLNPSSDVSERLQMFDDPRNKRGV 194
Query: 558 NVPDASLIPVSSTADVINLMNLGQKNRAVGATALNDRSSRSHSCLTVHVQGKDLT---SG 614
+ I V + +V ++ G R AT +N SSRSHS +V + K+ T
Sbjct: 195 IIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTIDGEE 254
Query: 615 TMYRGCMHLVDLAGSERVNKSEVTGDRLKEAQHINRSLSALGDVIASLAQKNPHVPYRNS 674
+ G ++LVDLAGSE + +S R +EA +IN+SL LG VI +L ++ PHVPYR S
Sbjct: 255 LVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVERTPHVPYRES 314
Query: 675 KLTQLLQDSLGGQAKTLMFVHISPEPDAVGETISTLKFAERVATV 719
KLT++LQDSLGG+ +T + ISP + ET+STL++A R +
Sbjct: 315 KLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNI 359
>pdb|4A28|A Chain A, Eg5-2
pdb|4A28|B Chain B, Eg5-2
Length = 368
Score = 189 bits (481), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 128/355 (36%), Positives = 198/355 (55%), Gaps = 25/355 (7%)
Query: 394 SIRVYCRVRPF----LSGQSNYLSTVDHIEEGNITINTPSKHGKG-WKSFSFNKVYGPSA 448
+I+V R RPF ++ + D + + +++ T K K+++F+ V+G S
Sbjct: 18 NIQVVVRCRPFNLAERKASAHSIVECDPVRK-EVSVRTGGLADKSSRKTYTFDMVFGAST 76
Query: 449 TQAEVF-SDMQPLIRSVLDGYNVCIFAYGQTGSGKTYTMTGPRELTEKS-------QGVN 500
Q +V+ S + P++ V+ GYN IFAYGQTG+GKT+TM G R E+ G+
Sbjct: 77 KQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPLDGII 136
Query: 501 YRALSDLFLIAEQRKDI-FRYDVAVQMLEIYNEQVRDLL-VTDGSNRRLEIRNS--SQTG 556
R L +F E+ D + V V +LEIYNE++ DLL + + RL++ + ++ G
Sbjct: 137 PRTLHQIF---EKLTDNGTEFSVKVSLLEIYNEELFDLLNPSSDVSERLQMFDDPRNKRG 193
Query: 557 LNVPDASLIPVSSTADVINLMNLGQKNRAVGATALNDRSSRSHSCLTVHVQGKDLT---S 613
+ + I V + +V ++ G R AT +N SSRSHS +V + K+ T
Sbjct: 194 VIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTIDGE 253
Query: 614 GTMYRGCMHLVDLAGSERVNKSEVTGDRLKEAQHINRSLSALGDVIASLAQKNPHVPYRN 673
+ G ++LVDLAGSE + +S R +EA +IN+SL LG VI +L ++ PHVPYR
Sbjct: 254 ELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVERTPHVPYRE 313
Query: 674 SKLTQLLQDSLGGQAKTLMFVHISPEPDAVGETISTLKFAERVATVELGAARVNK 728
SKLT++LQDSLGG+ +T + ISP + ET+STL++A R + L VN+
Sbjct: 314 SKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNI-LNKPEVNQ 367
>pdb|1II6|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp.
pdb|1II6|B Chain B, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp.
pdb|1YRS|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|1YRS|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|2FME|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 (ksp) In
Complex With Mg-adp And (r)-4-(3-hydroxyphenyl)-n,n,7,8-
Tetramethyl-3,4-dihydroisoquinoline-2(1h)-carboxamide
pdb|2FME|B Chain B, Crystal Structure Of The Mitotic Kinesin Eg5 (ksp) In
Complex With Mg-adp And (r)-4-(3-hydroxyphenyl)-n,n,7,8-
Tetramethyl-3,4-dihydroisoquinoline-2(1h)-carboxamide
pdb|2GM1|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2GM1|B Chain B, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2GM1|D Chain D, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2GM1|E Chain E, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2G1Q|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 9h
pdb|2G1Q|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 9h
pdb|2PG2|A Chain A, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 15
pdb|2PG2|B Chain B, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 15
pdb|2UYI|A Chain A, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 33
pdb|2UYI|B Chain B, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 33
pdb|2UYM|A Chain A, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 37
pdb|2UYM|B Chain B, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 37
pdb|3K5E|A Chain A, The Structure Of Human Kinesin-Like Motor Protein
Kif11KSPEG5 IN COMPLEX WITH ADP AND ENASTROL.
pdb|3K5E|B Chain B, The Structure Of Human Kinesin-Like Motor Protein
Kif11KSPEG5 IN COMPLEX WITH ADP AND ENASTROL.
pdb|3K3B|A Chain A, Co-crystal Structure Of The Human Kinesin Eg5 With A Novel
Tetrahydro- Beta-carboline
pdb|3K3B|B Chain B, Co-crystal Structure Of The Human Kinesin Eg5 With A Novel
Tetrahydro- Beta-carboline
pdb|3L9H|A Chain A, X-Ray Structure Of Mitotic Kinesin-5 (Ksp, Kif11, Eg5)in
Complex With The Hexahydro-2h-Pyrano[3,2-C]quinoline Emd
534085
pdb|3L9H|B Chain B, X-Ray Structure Of Mitotic Kinesin-5 (Ksp, Kif11, Eg5)in
Complex With The Hexahydro-2h-Pyrano[3,2-C]quinoline Emd
534085
pdb|2X7C|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Enastron
pdb|2X7C|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Enastron
pdb|2X7D|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Dimethylenastron
pdb|2X7D|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Dimethylenastron
pdb|2X7E|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-Fluorastrol
pdb|2X7E|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-Fluorastrol
pdb|2WOG|A Chain A, Intermediate And Final States Of Human Kinesin Eg5 In
Complex With S-Trityl-L-Cysteine
pdb|2WOG|B Chain B, Intermediate And Final States Of Human Kinesin Eg5 In
Complex With S-Trityl-L-Cysteine
pdb|2WOG|C Chain C, Intermediate And Final States Of Human Kinesin Eg5 In
Complex With S-Trityl-L-Cysteine
pdb|2X2R|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((4-
Chlorophenyl)diphenylmethylthio)propanoic Acid
pdb|2X2R|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((4-
Chlorophenyl)diphenylmethylthio)propanoic Acid
pdb|2X2R|C Chain C, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((4-
Chlorophenyl)diphenylmethylthio)propanoic Acid
pdb|2XAE|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((S)-2-Methyl-1,
1-Diphenylbutylthio)propanoic Acid
pdb|2XAE|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((S)-2-Methyl-1,
1-Diphenylbutylthio)propanoic Acid
pdb|2XAE|C Chain C, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((S)-2-Methyl-1,
1-Diphenylbutylthio)propanoic Acid
pdb|4A50|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
2-amino-5-(3-methylphenyl)-5,5-diphenylpentanoic Acid
pdb|4A51|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|C Chain C, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|D Chain D, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|E Chain E, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|F Chain F, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|G Chain G, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A5Y|A Chain A, Eg5-Inhibitor Complex
pdb|4A5Y|B Chain B, Eg5-Inhibitor Complex
pdb|4A5Y|C Chain C, Eg5-Inhibitor Complex
Length = 368
Score = 189 bits (480), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 125/345 (36%), Positives = 193/345 (55%), Gaps = 24/345 (6%)
Query: 395 IRVYCRVRPF----LSGQSNYLSTVDHIEEGNITINTPSKHGKG-WKSFSFNKVYGPSAT 449
I+V R RPF ++ + D + + +++ T K K+++F+ V+G S
Sbjct: 19 IQVVVRCRPFNLAERKASAHSIVECDPVRK-EVSVRTGGLADKSSRKTYTFDMVFGASTK 77
Query: 450 QAEVF-SDMQPLIRSVLDGYNVCIFAYGQTGSGKTYTMTGPRELTEKSQ-------GVNY 501
Q +V+ S + P++ V+ GYN IFAYGQTG+GKT+TM G R E+ G+
Sbjct: 78 QIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPLAGIIP 137
Query: 502 RALSDLFLIAEQRKDI-FRYDVAVQMLEIYNEQVRDLL-VTDGSNRRLEIRNS--SQTGL 557
R L +F E+ D + V V +LEIYNE++ DLL + + RL++ + ++ G+
Sbjct: 138 RTLHQIF---EKLTDNGTEFSVKVSLLEIYNEELFDLLNPSSDVSERLQMFDDPRNKRGV 194
Query: 558 NVPDASLIPVSSTADVINLMNLGQKNRAVGATALNDRSSRSHSCLTVHVQGKDLT---SG 614
+ I V + +V ++ G R AT +N SSRSHS +V + K+ T
Sbjct: 195 IIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTIDGEE 254
Query: 615 TMYRGCMHLVDLAGSERVNKSEVTGDRLKEAQHINRSLSALGDVIASLAQKNPHVPYRNS 674
+ G ++LVDLAGSE + +S R +EA +IN+SL LG VI +L ++ PHVPYR S
Sbjct: 255 LVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVERTPHVPYRES 314
Query: 675 KLTQLLQDSLGGQAKTLMFVHISPEPDAVGETISTLKFAERVATV 719
KLT++LQDSLGG+ +T + ISP + ET+STL++A R +
Sbjct: 315 KLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNI 359
>pdb|4A1Z|A Chain A, Eg5-1
pdb|4A1Z|B Chain B, Eg5-1
Length = 368
Score = 189 bits (480), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 125/345 (36%), Positives = 193/345 (55%), Gaps = 24/345 (6%)
Query: 395 IRVYCRVRPF----LSGQSNYLSTVDHIEEGNITINTPSKHGKG-WKSFSFNKVYGPSAT 449
I+V R RPF ++ + D + + +++ T K K+++F+ V+G S
Sbjct: 19 IQVVVRCRPFNLAERKASAHSIVECDPVRK-EVSVRTGGLADKSSRKTYTFDMVFGASTK 77
Query: 450 QAEVF-SDMQPLIRSVLDGYNVCIFAYGQTGSGKTYTMTGPRELTEKSQ-------GVNY 501
Q +V+ S + P++ V+ GYN IFAYGQTG+GKT+TM G R E+ G+
Sbjct: 78 QIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEVPLAGIIP 137
Query: 502 RALSDLFLIAEQRKDI-FRYDVAVQMLEIYNEQVRDLL-VTDGSNRRLEIRNS--SQTGL 557
R L +F E+ D + V V +LEIYNE++ DLL + + RL++ + ++ G+
Sbjct: 138 RTLHQIF---EKLTDNGTEFSVKVSLLEIYNEELFDLLNPSSDVSERLQMFDDPRNKRGV 194
Query: 558 NVPDASLIPVSSTADVINLMNLGQKNRAVGATALNDRSSRSHSCLTVHVQGKDLT---SG 614
+ I V + +V ++ G R AT +N SSRSHS +V + K+ T
Sbjct: 195 IIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTIDGEE 254
Query: 615 TMYRGCMHLVDLAGSERVNKSEVTGDRLKEAQHINRSLSALGDVIASLAQKNPHVPYRNS 674
+ G ++LVDLAGSE + +S R +EA +IN+SL LG VI +L ++ PHVPYR S
Sbjct: 255 LVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVERTPHVPYRES 314
Query: 675 KLTQLLQDSLGGQAKTLMFVHISPEPDAVGETISTLKFAERVATV 719
KLT++LQDSLGG+ +T + ISP + ET+STL++A R +
Sbjct: 315 KLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNI 359
>pdb|3HQD|A Chain A, Human Kinesin Eg5 Motor Domain In Complex With Amppnp And
Mg2+
pdb|3HQD|B Chain B, Human Kinesin Eg5 Motor Domain In Complex With Amppnp And
Mg2+
pdb|3KEN|A Chain A, Human Eg5 In Complex With S-Trityl-L-Cysteine
Length = 369
Score = 189 bits (479), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 125/345 (36%), Positives = 193/345 (55%), Gaps = 24/345 (6%)
Query: 395 IRVYCRVRPF----LSGQSNYLSTVDHIEEGNITINTPSKHGKG-WKSFSFNKVYGPSAT 449
I+V R RPF ++ + D + + +++ T K K+++F+ V+G S
Sbjct: 19 IQVVVRCRPFNLAERKASAHSIVECDPVRK-EVSVRTGGLADKSSRKTYTFDMVFGASTK 77
Query: 450 QAEVF-SDMQPLIRSVLDGYNVCIFAYGQTGSGKTYTMTGPRELTEKSQ-------GVNY 501
Q +V+ S + P++ V+ GYN IFAYGQTG+GKT+TM G R E+ G+
Sbjct: 78 QIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPLAGIIP 137
Query: 502 RALSDLFLIAEQRKDI-FRYDVAVQMLEIYNEQVRDLL-VTDGSNRRLEIRNS--SQTGL 557
R L +F E+ D + V V +LEIYNE++ DLL + + RL++ + ++ G+
Sbjct: 138 RTLHQIF---EKLTDNGTEFSVKVSLLEIYNEELFDLLNPSSDVSERLQMFDDPRNKRGV 194
Query: 558 NVPDASLIPVSSTADVINLMNLGQKNRAVGATALNDRSSRSHSCLTVHVQGKDLT---SG 614
+ I V + +V ++ G R AT +N SSRSHS +V + K+ T
Sbjct: 195 IIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTIDGEE 254
Query: 615 TMYRGCMHLVDLAGSERVNKSEVTGDRLKEAQHINRSLSALGDVIASLAQKNPHVPYRNS 674
+ G ++LVDLAGSE + +S R +EA +IN+SL LG VI +L ++ PHVPYR S
Sbjct: 255 LVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVERTPHVPYRES 314
Query: 675 KLTQLLQDSLGGQAKTLMFVHISPEPDAVGETISTLKFAERVATV 719
KLT++LQDSLGG+ +T + ISP + ET+STL++A R +
Sbjct: 315 KLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNI 359
>pdb|1Q0B|A Chain A, Crystal Structure Of The Motor Protein Ksp In Complex With
Adp And Monastrol
pdb|1Q0B|B Chain B, Crystal Structure Of The Motor Protein Ksp In Complex With
Adp And Monastrol
pdb|2FKY|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 13
pdb|2FKY|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 13
pdb|2FL2|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 19
pdb|2FL2|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 19
pdb|2FL6|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 6
pdb|2FL6|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 6
pdb|2IEH|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)- Mon97, A New Monastrol-Based Inhibitor That Binds
As (R)- Enantiomer
pdb|2IEH|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)- Mon97, A New Monastrol-Based Inhibitor That Binds
As (R)- Enantiomer
pdb|2Q2Y|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|2Q2Y|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|2Q2Z|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 22
pdb|2Q2Z|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 22
pdb|3CJO|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 30
pdb|3CJO|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 30
Length = 367
Score = 189 bits (479), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 125/345 (36%), Positives = 193/345 (55%), Gaps = 24/345 (6%)
Query: 395 IRVYCRVRPF----LSGQSNYLSTVDHIEEGNITINTPSKHGKG-WKSFSFNKVYGPSAT 449
I+V R RPF ++ + D + + +++ T K K+++F+ V+G S
Sbjct: 18 IQVVVRCRPFNLAERKASAHSIVECDPVRK-EVSVRTGGLADKSSRKTYTFDMVFGASTK 76
Query: 450 QAEVF-SDMQPLIRSVLDGYNVCIFAYGQTGSGKTYTMTGPRELTEKSQ-------GVNY 501
Q +V+ S + P++ V+ GYN IFAYGQTG+GKT+TM G R E+ G+
Sbjct: 77 QIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPLAGIIP 136
Query: 502 RALSDLFLIAEQRKDI-FRYDVAVQMLEIYNEQVRDLL-VTDGSNRRLEIRNS--SQTGL 557
R L +F E+ D + V V +LEIYNE++ DLL + + RL++ + ++ G+
Sbjct: 137 RTLHQIF---EKLTDNGTEFSVKVSLLEIYNEELFDLLNPSSDVSERLQMFDDPRNKRGV 193
Query: 558 NVPDASLIPVSSTADVINLMNLGQKNRAVGATALNDRSSRSHSCLTVHVQGKDLT---SG 614
+ I V + +V ++ G R AT +N SSRSHS +V + K+ T
Sbjct: 194 IIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTIDGEE 253
Query: 615 TMYRGCMHLVDLAGSERVNKSEVTGDRLKEAQHINRSLSALGDVIASLAQKNPHVPYRNS 674
+ G ++LVDLAGSE + +S R +EA +IN+SL LG VI +L ++ PHVPYR S
Sbjct: 254 LVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVERTPHVPYRES 313
Query: 675 KLTQLLQDSLGGQAKTLMFVHISPEPDAVGETISTLKFAERVATV 719
KLT++LQDSLGG+ +T + ISP + ET+STL++A R +
Sbjct: 314 KLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNI 358
>pdb|1X88|A Chain A, Human Eg5 Motor Domain Bound To Mg-Adp And Monastrol
pdb|1X88|B Chain B, Human Eg5 Motor Domain Bound To Mg-Adp And Monastrol
Length = 359
Score = 189 bits (479), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 125/346 (36%), Positives = 194/346 (56%), Gaps = 24/346 (6%)
Query: 394 SIRVYCRVRPF----LSGQSNYLSTVDHIEEGNITINTPSKHGKG-WKSFSFNKVYGPSA 448
+I+V R RPF ++ + D + + +++ T K K+++F+ V+G S
Sbjct: 9 NIQVVVRCRPFNLAERKASAHSIVECDPVRK-EVSVRTGGLADKSSRKTYTFDMVFGAST 67
Query: 449 TQAEVF-SDMQPLIRSVLDGYNVCIFAYGQTGSGKTYTMTGPRELTEKSQ-------GVN 500
Q +V+ S + P++ V+ GYN IFAYGQTG+GKT+TM G R E+ G+
Sbjct: 68 KQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPLAGII 127
Query: 501 YRALSDLFLIAEQRKDI-FRYDVAVQMLEIYNEQVRDLL-VTDGSNRRLEIRNS--SQTG 556
R L +F E+ D + V V +LEIYNE++ DLL + + RL++ + ++ G
Sbjct: 128 PRTLHQIF---EKLTDNGTEFSVKVSLLEIYNEELFDLLNPSSDVSERLQMFDDPRNKRG 184
Query: 557 LNVPDASLIPVSSTADVINLMNLGQKNRAVGATALNDRSSRSHSCLTVHVQGKDLT---S 613
+ + I V + +V ++ G R AT +N SSRSHS +V + K+ T
Sbjct: 185 VIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTIDGE 244
Query: 614 GTMYRGCMHLVDLAGSERVNKSEVTGDRLKEAQHINRSLSALGDVIASLAQKNPHVPYRN 673
+ G ++LVDLAGSE + +S R +EA +IN+SL LG VI +L ++ PHVPYR
Sbjct: 245 ELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVERTPHVPYRE 304
Query: 674 SKLTQLLQDSLGGQAKTLMFVHISPEPDAVGETISTLKFAERVATV 719
SKLT++LQDSLGG+ +T + ISP + ET+STL++A R +
Sbjct: 305 SKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNI 350
>pdb|4AP0|A Chain A, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
pdb|4AP0|B Chain B, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
pdb|4AP0|C Chain C, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
pdb|4AP0|D Chain D, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
Length = 370
Score = 189 bits (479), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 125/345 (36%), Positives = 193/345 (55%), Gaps = 24/345 (6%)
Query: 395 IRVYCRVRPF----LSGQSNYLSTVDHIEEGNITINTPSKHGKG-WKSFSFNKVYGPSAT 449
I+V R RPF ++ + D + + +++ T K K+++F+ V+G S
Sbjct: 21 IQVVVRCRPFNLAERKASAHSIVECDPVRK-EVSVRTGGLADKSSRKTYTFDMVFGASTK 79
Query: 450 QAEVF-SDMQPLIRSVLDGYNVCIFAYGQTGSGKTYTMTGPRELTEKSQ-------GVNY 501
Q +V+ S + P++ V+ GYN IFAYGQTG+GKT+TM G R E+ G+
Sbjct: 80 QIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPLAGIIP 139
Query: 502 RALSDLFLIAEQRKDI-FRYDVAVQMLEIYNEQVRDLL-VTDGSNRRLEIRNS--SQTGL 557
R L +F E+ D + V V +LEIYNE++ DLL + + RL++ + ++ G+
Sbjct: 140 RTLHQIF---EKLTDNGTEFSVKVSLLEIYNEELFDLLNPSSDVSERLQMFDDPRNKRGV 196
Query: 558 NVPDASLIPVSSTADVINLMNLGQKNRAVGATALNDRSSRSHSCLTVHVQGKDLT---SG 614
+ I V + +V ++ G R AT +N SSRSHS +V + K+ T
Sbjct: 197 IIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTIDGEE 256
Query: 615 TMYRGCMHLVDLAGSERVNKSEVTGDRLKEAQHINRSLSALGDVIASLAQKNPHVPYRNS 674
+ G ++LVDLAGSE + +S R +EA +IN+SL LG VI +L ++ PHVPYR S
Sbjct: 257 LVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVERTPHVPYRES 316
Query: 675 KLTQLLQDSLGGQAKTLMFVHISPEPDAVGETISTLKFAERVATV 719
KLT++LQDSLGG+ +T + ISP + ET+STL++A R +
Sbjct: 317 KLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNI 361
>pdb|3ZCW|A Chain A, Eg5 - New Allosteric Binding Site
Length = 348
Score = 188 bits (477), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 125/346 (36%), Positives = 194/346 (56%), Gaps = 24/346 (6%)
Query: 394 SIRVYCRVRPF----LSGQSNYLSTVDHIEEGNITINTPSKHGKG-WKSFSFNKVYGPSA 448
+I+V R RPF ++ + D + + +++ T K K+++F+ V+G S
Sbjct: 3 NIQVVVRCRPFNLAERKASAHSIVECDPVRK-EVSVRTGGLADKSSRKTYTFDMVFGAST 61
Query: 449 TQAEVF-SDMQPLIRSVLDGYNVCIFAYGQTGSGKTYTMTGPRELTEKSQ-------GVN 500
Q +V+ S + P++ V+ GYN IFAYGQTG+GKT+TM G R E+ G+
Sbjct: 62 KQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPLAGII 121
Query: 501 YRALSDLFLIAEQRKDI-FRYDVAVQMLEIYNEQVRDLL-VTDGSNRRLEIRNS--SQTG 556
R L +F E+ D + V V +LEIYNE++ DLL + + RL++ + ++ G
Sbjct: 122 PRTLHQIF---EKLTDNGTEFSVKVSLLEIYNEELFDLLNPSSDVSERLQMFDDPRNKRG 178
Query: 557 LNVPDASLIPVSSTADVINLMNLGQKNRAVGATALNDRSSRSHSCLTVHVQGKDLT---S 613
+ + I V + +V ++ G R AT +N SSRSHS +V + K+ T
Sbjct: 179 VIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTIDGE 238
Query: 614 GTMYRGCMHLVDLAGSERVNKSEVTGDRLKEAQHINRSLSALGDVIASLAQKNPHVPYRN 673
+ G ++LVDLAGSE + +S R +EA +IN+SL LG VI +L ++ PHVPYR
Sbjct: 239 ELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVERTPHVPYRE 298
Query: 674 SKLTQLLQDSLGGQAKTLMFVHISPEPDAVGETISTLKFAERVATV 719
SKLT++LQDSLGG+ +T + ISP + ET+STL++A R +
Sbjct: 299 SKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNI 344
>pdb|1T5C|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinetochore
Protein Cenp-E
pdb|1T5C|B Chain B, Crystal Structure Of The Motor Domain Of Human Kinetochore
Protein Cenp-E
Length = 349
Score = 176 bits (445), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 122/330 (36%), Positives = 182/330 (55%), Gaps = 18/330 (5%)
Query: 392 KGSIRVYCRVRPFLSGQSNYLSTVDHIEEGNITINTPSKHGKGWKSFSFNKVYGPSATQA 451
+G++ V RVRP S + + T + T N G KSF+F++V+ + T
Sbjct: 3 EGAVAVCVRVRPLNSREESLGETAQVYWK---TDNNVIYQVDGSKSFNFDRVFHGNETTK 59
Query: 452 EVFSDMQ-PLIRSVLDGYNVCIFAYGQTGSGKTYTMTGPRELTEKSQGVNYRALSDLFLI 510
V+ ++ P+I S + GYN IFAYGQT SGKTYTM G +E GV RA+ D+F
Sbjct: 60 NVYEEIAAPIIDSAIQGYNGTIFAYGQTASGKTYTMMG----SEDHLGVIPRAIHDIFQK 115
Query: 511 AEQRKDIFRYDVAVQMLEIYNEQVRDLLVTDGSNRRLEIRNSSQTGLNVPDASLIPVSST 570
++ D + + V +EIYNE + DLL + L IR + V D + V ++
Sbjct: 116 IKKFPD-REFLLRVSYMEIYNETITDLLCGTQKMKPLIIREDVNRNVYVADLTEEVVYTS 174
Query: 571 ADVINLMNLGQKNRAVGATALNDRSSRSHSCLTVHVQGKDL-----TSGTMYRGCMHLVD 625
+ + G+K+R G T +N RSSRSH+ + ++ ++ G++ ++LVD
Sbjct: 175 EMALKWITKGEKSRHYGETKMNQRSSRSHTIFRMILESREKGEPSNCEGSVKVSHLNLVD 234
Query: 626 LAGSERVNKSEVTGDRLKEAQHINRSLSALGDVIASLA--QKNPHVPYRNSKLTQLLQDS 683
LAGSER ++ G RLKE +INRSL LG VI L+ Q + YR+SKLT++LQ+S
Sbjct: 235 LAGSERAAQTGAAGVRLKEGCNINRSLFILGQVIKKLSDGQVGGFINYRDSKLTRILQNS 294
Query: 684 LGGQAKTLMFVHISPEPDAVGETISTLKFA 713
LGG AKT + I+P + ET++ L+FA
Sbjct: 295 LGGNAKTRIICTITPV--SFDETLTALQFA 322
>pdb|3NWN|A Chain A, Crystal Structure Of The Human Kif9 Motor Domain In
Complex With Adp
Length = 359
Score = 162 bits (411), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 113/293 (38%), Positives = 161/293 (54%), Gaps = 13/293 (4%)
Query: 435 WKSFSFNKVYGPSATQAEVFSDM-QPLIRSVLDGYNVCIFAYGQTGSGKTYTMTGPRELT 493
W SF + V A+Q V+ + + ++ LDGYN I YGQTG+GKTYTM G E
Sbjct: 72 W-SFKLDGVL-HDASQDLVYETVAKDVVSQALDGYNGTIMCYGQTGAGKTYTMMGATE-N 128
Query: 494 EKSQGVNYRALSDLFLIAEQRKDIFRYDVAVQMLEIYNEQVRDLLVT----DGSNRRLEI 549
K +G+ RAL +F + E+R V V LEIYNE + DLL T S + I
Sbjct: 129 YKHRGILPRALQQVFRMIEERP-THAITVRVSYLEIYNESLFDLLSTLPYVGPSVTPMTI 187
Query: 550 RNSSQTGLNVPDASLIPVSSTADVINLMNLGQKNRAVGATALNDRSSRSHSCLTVHVQG- 608
+ Q G+ + S+ S D +L+ G+ NR + + +N SSRSH T++++
Sbjct: 188 VENPQ-GVFIKGLSVHLTSQEEDAFSLLFEGETNRIIASHTMNKNSSRSHCIFTIYLEAH 246
Query: 609 -KDLTSGTMYRGCMHLVDLAGSERVNKSEVTGDRLKEAQHINRSLSALGDVIASLA-QKN 666
+ L+ ++LVDLAGSER+ KS G LKEA +IN+SLS L I +L QK
Sbjct: 247 SRTLSEEKYITSKINLVDLAGSERLGKSGSEGQVLKEATYINKSLSFLEQAIIALGDQKR 306
Query: 667 PHVPYRNSKLTQLLQDSLGGQAKTLMFVHISPEPDAVGETISTLKFAERVATV 719
H+P+R KLT L+DSLGG ++ +I E + ET+S+L+FA R+ V
Sbjct: 307 DHIPFRQCKLTHALKDSLGGNCNMVLVTNIYGEAAQLEETLSSLRFASRMKLV 359
>pdb|1V8J|A Chain A, The Crystal Structure Of The Minimal Functional Domain Of
The Microtubule Destabilizer Kif2c Complexed With Mg-adp
pdb|1V8K|A Chain A, The Crystal Structure Of The Minimal Functional Domain Of
The Microtubule Destabilizer Kif2c Complexed With
Mg-Amppnp
Length = 410
Score = 159 bits (402), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 108/289 (37%), Positives = 158/289 (54%), Gaps = 18/289 (6%)
Query: 436 KSFSFNKVYGPSATQAEVFS-DMQPLIRSVLDGYNVCIFAYGQTGSGKTYTMTGPRELTE 494
++F F+ + +A+ V+ +PL++++ +G FAYGQTGSGKT+TM G +L+
Sbjct: 121 QAFCFDFAFDETASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTMGG--DLSG 178
Query: 495 KSQ----GVNYRALSDLFLIAEQ-RKDIFRYDVAVQMLEIYNEQVRDLLVTDGSNRRLEI 549
KSQ G+ A D+FL+ Q R +V V EIYN +V DLL R LE
Sbjct: 179 KSQNASKGIYAMASRDVFLLKNQPRYRNLNLEVYVTFFEIYNGKVFDLLNKKAKLRVLE- 237
Query: 550 RNSSQTGLNVPDASLIPVSSTADVINLMNLGQKNRAVGATALNDRSSRSHSCLTVHVQGK 609
S+ + V V+ DVI ++N+G R G T N SSRSH+C + ++
Sbjct: 238 --DSRQQVQVVGLQEYLVTCADDVIKMINMGSACRTSGQTFANSNSSRSHACFQILLR-- 293
Query: 610 DLTSGTMYRGCMHLVDLAGSER-VNKSEVTGDRLKEAQHINRSLSALGDVIASLAQKNPH 668
T G ++ G LVDLAG+ER + S E IN+SL AL + I +L Q H
Sbjct: 294 --TKGRLH-GKFSLVDLAGNERGADTSSADRQTRMEGAEINKSLLALKECIRALGQNKAH 350
Query: 669 VPYRNSKLTQLLQDSLGGQ-AKTLMFVHISPEPDAVGETISTLKFAERV 716
P+R SKLTQ+L+DS G+ ++T M ISP + T++TL++A+RV
Sbjct: 351 TPFRESKLTQVLRDSFIGENSRTCMIAMISPGISSCEYTLNTLRYADRV 399
>pdb|3EDL|D Chain D, Kinesin13-Microtubule Ring Complex
Length = 331
Score = 157 bits (398), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 108/289 (37%), Positives = 158/289 (54%), Gaps = 18/289 (6%)
Query: 436 KSFSFNKVYGPSATQAEVFS-DMQPLIRSVLDGYNVCIFAYGQTGSGKTYTMTGPRELTE 494
++F F+ + +A+ V+ +PL++++ +G FAYGQTGSGKT+TM G +L+
Sbjct: 49 QAFCFDFAFDETASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTMGG--DLSG 106
Query: 495 KSQ----GVNYRALSDLFLIAEQ-RKDIFRYDVAVQMLEIYNEQVRDLLVTDGSNRRLEI 549
KSQ G+ A D+FL+ Q R +V V EIYN +V DLL R LE
Sbjct: 107 KSQNASKGIYAMASRDVFLLKNQPRYRNLNLEVYVTFFEIYNGKVFDLLNKKAKLRVLE- 165
Query: 550 RNSSQTGLNVPDASLIPVSSTADVINLMNLGQKNRAVGATALNDRSSRSHSCLTVHVQGK 609
S+ + V V+ DVI ++N+G R G T N SSRSH+C + ++
Sbjct: 166 --DSRQQVQVVGLQEYLVTCADDVIKMINMGSACRTSGQTFANSNSSRSHACFQILLR-- 221
Query: 610 DLTSGTMYRGCMHLVDLAGSER-VNKSEVTGDRLKEAQHINRSLSALGDVIASLAQKNPH 668
T G ++ G LVDLAG+ER + S E IN+SL AL + I +L Q H
Sbjct: 222 --TKGRLH-GKFSLVDLAGNERGADTSSADRQTRMEGAEINKSLLALKECIRALGQNKAH 278
Query: 669 VPYRNSKLTQLLQDSLGGQ-AKTLMFVHISPEPDAVGETISTLKFAERV 716
P+R SKLTQ+L+DS G+ ++T M ISP + T++TL++A+RV
Sbjct: 279 TPFRESKLTQVLRDSFIGENSRTCMIAMISPGISSCEYTLNTLRYADRV 327
>pdb|3PXN|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member
Kin10NOD IN Complex With Divalent Manganese And Adp
Length = 344
Score = 152 bits (384), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 97/280 (34%), Positives = 153/280 (54%), Gaps = 19/280 (6%)
Query: 438 FSFNKVYGPSATQAEVFSDM-QPLIRSVLDGYNVCIFAYGQTGSGKTYTM--TGPRELTE 494
F F+ + + +Q E++ + PL+ +L+G+ AYGQTG+GK+Y+M T P E+
Sbjct: 63 FHFDHAFPATISQDEMYQALILPLVDKLLEGFQCTALAYGQTGTGKSYSMGMTPPGEILP 122
Query: 495 KSQGVNYRALSDLF--LIAEQRKDIFRYDVAVQMLEIYNEQVRDLLVTDGSNRRLEIRNS 552
+ G+ RAL D+F + A Q + V +EIYNE+ DLL GS + +
Sbjct: 123 EHLGILPRALGDIFERVTARQENNKDAIQVYASFIEIYNEKPFDLL---GSTPHMPM--- 176
Query: 553 SQTGLNVPDASLIPVSSTADVINLMNLGQKNRAVGATALNDRSSRSHSCLTVHVQGKDLT 612
+ +P+ S AD+ +++ LG +NR V T +N SSRSH+ +T+HV+ K
Sbjct: 177 --VAARCQRCTCLPLHSQADLHHILELGTRNRRVRPTNMNSNSSRSHAIVTIHVKSKT-- 232
Query: 613 SGTMYRGCMHLVDLAGSERVNKSEVTGDRLKEAQHINRSLSALGDVIASLAQKNPHVPYR 672
+ M++VDLAGSE V ++ G +E +IN L ++ V+ S+A + +PYR
Sbjct: 233 ----HHSRMNIVDLAGSEGVRRTGHEGVARQEGVNINLGLLSINKVVMSMAAGHTVIPYR 288
Query: 673 NSKLTQLLQDSLGGQAKTLMFVHISPEPDAVGETISTLKF 712
+S LT +LQ SL Q+ ISP + ET+STL+F
Sbjct: 289 DSVLTTVLQASLTAQSYLTFLACISPHQCDLSETLSTLRF 328
>pdb|3DC4|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member
Nod In Complex With Adp
pdb|3DCB|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member
Nod In Complex With Amppnp
pdb|3DCO|N Chain N, Drosophila Nod (3dc4) And Bovine Tubulin (1jff) Docked
Into The 11-Angstrom Cryo-Em Map Of Nucleotide-Free Nod
Complexed To The Microtubule
Length = 344
Score = 152 bits (383), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 97/280 (34%), Positives = 153/280 (54%), Gaps = 19/280 (6%)
Query: 438 FSFNKVYGPSATQAEVFSDM-QPLIRSVLDGYNVCIFAYGQTGSGKTYTM--TGPRELTE 494
F F+ + + +Q E++ + PL+ +L+G+ AYGQTG+GK+Y+M T P E+
Sbjct: 63 FHFDHAFPATISQDEMYQALILPLVDKLLEGFQCTALAYGQTGTGKSYSMGMTPPGEILP 122
Query: 495 KSQGVNYRALSDLF--LIAEQRKDIFRYDVAVQMLEIYNEQVRDLLVTDGSNRRLEIRNS 552
+ G+ RAL D+F + A Q + V +EIYNE+ DLL GS + +
Sbjct: 123 EHLGILPRALGDIFERVTARQENNKDAIQVYASFIEIYNEKPFDLL---GSTPHMPM--- 176
Query: 553 SQTGLNVPDASLIPVSSTADVINLMNLGQKNRAVGATALNDRSSRSHSCLTVHVQGKDLT 612
+ +P+ S AD+ +++ LG +NR V T +N SSRSH+ +T+HV+ K
Sbjct: 177 --VAARCQRCTCLPLHSQADLHHILELGTRNRRVRPTNMNSNSSRSHAIVTIHVKSKT-- 232
Query: 613 SGTMYRGCMHLVDLAGSERVNKSEVTGDRLKEAQHINRSLSALGDVIASLAQKNPHVPYR 672
+ M++VDLAGSE V ++ G +E +IN L ++ V+ S+A + +PYR
Sbjct: 233 ----HHSRMNIVDLAGSEGVRRTGHEGVARQEGVNINLGLLSINKVVMSMAAGHTVIPYR 288
Query: 673 NSKLTQLLQDSLGGQAKTLMFVHISPEPDAVGETISTLKF 712
+S LT +LQ SL Q+ ISP + ET+STL+F
Sbjct: 289 DSVLTTVLQASLTAQSYLTFLACISPHQCDLSETLSTLRF 328
>pdb|2HEH|A Chain A, Crystal Structure Of The Kif2c Motor Domain (Casp Target)
Length = 387
Score = 152 bits (383), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 107/291 (36%), Positives = 159/291 (54%), Gaps = 22/291 (7%)
Query: 436 KSFSFNKVYGPSATQAEVFS-DMQPLIRSVLDGYNVCIFAYGQTGSGKTYTMTGPRELTE 494
++F F+ + +A+ V+ +PL++++ +G FAYGQTGSGKT+TM G +L+
Sbjct: 101 QAFCFDFAFDETASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTMGG--DLSG 158
Query: 495 KSQ----GVNYRALSDLFLIAEQ---RKDIFRYDVAVQMLEIYNEQVRDLLVTDGSNRRL 547
K+Q G+ A D+FL+ Q RK +V V EIYN ++ DLL R L
Sbjct: 159 KAQNASKGIYAMASRDVFLLKNQPCYRK--LGLEVYVTFFEIYNGKLFDLLNKKAKLRVL 216
Query: 548 EIRNSSQTGLNVPDASLIPVSSTADVINLMNLGQKNRAVGATALNDRSSRSHSCLTVHVQ 607
E + + V V+S DVI ++++G R G T N SSRSH+C + ++
Sbjct: 217 E---DGKQQVQVVGLQEHLVNSADDVIKMIDMGSACRTSGQTFANSNSSRSHACFQIILR 273
Query: 608 GKDLTSGTMYRGCMHLVDLAGSER-VNKSEVTGDRLKEAQHINRSLSALGDVIASLAQKN 666
K G M+ G LVDLAG+ER + S E IN+SL AL + I +L Q
Sbjct: 274 AK----GRMH-GKFSLVDLAGNERGADTSSADRQTRMEGAEINKSLLALKECIRALGQNK 328
Query: 667 PHVPYRNSKLTQLLQDSLGGQ-AKTLMFVHISPEPDAVGETISTLKFAERV 716
H P+R SKLTQ+L+DS G+ ++T M ISP + T++TL++A+RV
Sbjct: 329 AHTPFRESKLTQVLRDSFIGENSRTCMIATISPGISSCEYTLNTLRYADRV 379
>pdb|2GRY|A Chain A, Crystal Structure Of The Human Kif2 Motor Domain In
Complex With Adp
Length = 420
Score = 135 bits (339), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 98/291 (33%), Positives = 153/291 (52%), Gaps = 22/291 (7%)
Query: 436 KSFSFNKVYGPSATQAEVFS-DMQPLIRSVLDGYNVCIFAYGQTGSGKTYTMTGPRELTE 494
++F F+ + SA V+ +PL+ ++ + FAYGQTGSGKT+TM G + +
Sbjct: 139 QTFRFDYAFDDSAPNEMVYRFTARPLVETIFERGMATCFAYGQTGSGKTHTMGG--DFSG 196
Query: 495 KSQ----GVNYRALSDLFLIAEQ-RKDIFRYDVAVQMLEIYNEQVRDLLVTDGSNRRLEI 549
K+Q G+ A D+FL+ ++ V EIY+ +V DLL NR+ ++
Sbjct: 197 KNQDCSKGIYALAARDVFLMLKKPNYKKLELQVYATFFEIYSGKVFDLL-----NRKTKL 251
Query: 550 R--NSSQTGLNVPDASLIPVSSTADVINLMNLGQKNRAVGATALNDRSSRSHSCLTVHVQ 607
R + + V V DV+ L+++G R G T+ N SSRSH+ + ++
Sbjct: 252 RVLEDGKQQVQVVGLQEREVKCVEDVLKLIDIGNSCRTSGQTSANAHSSRSHAVFQIILR 311
Query: 608 GKDLTSGTMYRGCMHLVDLAGSER-VNKSEVTGDRLKEAQHINRSLSALGDVIASLAQKN 666
K G ++ G L+DLAG+ER + S E IN+SL AL + I +L +
Sbjct: 312 RK----GKLH-GKFSLIDLAGNERGADTSSADRQTRLEGAEINKSLLALKECIRALGRNK 366
Query: 667 PHVPYRNSKLTQLLQDSLGGQ-AKTLMFVHISPEPDAVGETISTLKFAERV 716
PH P+R SKLTQ+L+DS G+ ++T M ISP + T++TL++A RV
Sbjct: 367 PHTPFRASKLTQVLRDSFIGENSRTCMIATISPGMASCENTLNTLRYANRV 417
>pdb|1RY6|A Chain A, Crystal Structure Of Internal Kinesin Motor Domain
Length = 360
Score = 127 bits (320), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 95/291 (32%), Positives = 156/291 (53%), Gaps = 26/291 (8%)
Query: 438 FSFNKVYGPSATQAEVFSD-MQPLIRSVLDGYNVC-IFAYGQTGSGKTYTMTGPRELTEK 495
F +KV+ + V+ + ++PLI + + VC FAYGQTGSGKTYTM G + +
Sbjct: 52 FIVDKVFDDTVDNFTVYENTIKPLIIDLYENGCVCSCFAYGQTGSGKTYTMLGSQPYGQS 111
Query: 496 -SQGVNYRALSDLFLI-----AEQRKDIFRYDVAVQMLEIYNEQVRDLLVTDGSNRRLEI 549
+ G+ A D+F + K IF + EIY ++ DLL LE
Sbjct: 112 DTPGIFQYAAGDIFTFLNIYDKDNTKGIF-----ISFYEIYCGKLYDLLQKRKMVAALE- 165
Query: 550 RNSSQTGLNVPDASLIPVSSTADVINLMNLGQKNRAVGATALNDRSSRSHSCLTVHVQGK 609
+ + + V D ++ V + ++I M G R +G + ND SSRSH+ L + + K
Sbjct: 166 --NGKKEVVVKDLKILRVLTKEELILKMIDGVLLRKIGVNSQNDESSRSHAILNIDL--K 221
Query: 610 DLTSGTMYRGCMHLVDLAGSER----VNKSEVTGDRLKEAQHINRSLSALGDVIASLAQK 665
D+ T G + +DLAGSER V++++ T + +INRSL AL + I ++
Sbjct: 222 DINKNTSL-GKIAFIDLAGSERGADTVSQNKQTQ---TDGANINRSLLALKECIRAMDSD 277
Query: 666 NPHVPYRNSKLTQLLQDSLGGQAKTLMFVHISPEPDAVGETISTLKFAERV 716
H+P+R+S+LT++L+D G++K++M +ISP +T++TL+++ RV
Sbjct: 278 KNHIPFRDSELTKVLRDIFVGKSKSIMIANISPTISCCEQTLNTLRYSSRV 328
>pdb|2KIN|A Chain A, Kinesin (Monomeric) From Rattus Norvegicus
pdb|3KIN|A Chain A, Kinesin (Dimeric) From Rattus Norvegicus
pdb|3KIN|C Chain C, Kinesin (Dimeric) From Rattus Norvegicus
Length = 238
Score = 117 bits (292), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 81/242 (33%), Positives = 131/242 (54%), Gaps = 13/242 (5%)
Query: 394 SIRVYCRVRPFLSGQSNYLSTVDHIEE--GNITINTPSKHGKGWKSFSFNKVYGPSATQA 451
SI+V CR RP ++ L I + G T+ G+G K + F++V P+ TQ
Sbjct: 7 SIKVMCRFRPL--NEAEILRGDKFIPKFKGEETVVI----GQG-KPYVFDRVLPPNTTQE 59
Query: 452 EVFSDM-QPLIRSVLDGYNVCIFAYGQTGSGKTYTMTGPRELTEKSQGVNYRALSDLFLI 510
+V++ + +++ VL+GYN IFAYGQT SGKT+TM G + G+ R D+F
Sbjct: 60 QVYNACAKQIVKDVLEGYNGTIFAYGQTSSGKTHTMEGKLH-DPQLMGIIPRIAHDIFDH 118
Query: 511 AEQRKDIFRYDVAVQMLEIYNEQVRDLLVTDGSNRRLEIRNSSQTGLNVPDASLIPVSST 570
+ + + V EIY +++RDLL D S L + V + VSS
Sbjct: 119 IYSMDENLEFHIKVSYFEIYLDKIRDLL--DVSKTNLAVHEDKNRVPYVKGCTERFVSSP 176
Query: 571 ADVINLMNLGQKNRAVGATALNDRSSRSHSCLTVHVQGKDLTSGTMYRGCMHLVDLAGSE 630
+V+++++ G+ NR V T +N+ SSRSHS ++++ +++ + G ++LVDLAGSE
Sbjct: 177 EEVMDVIDEGKANRHVAVTNMNEHSSRSHSIFLINIKQENVETEKKLSGKLYLVDLAGSE 236
Query: 631 RV 632
+V
Sbjct: 237 KV 238
>pdb|3KIN|B Chain B, Kinesin (Dimeric) From Rattus Norvegicus
pdb|3KIN|D Chain D, Kinesin (Dimeric) From Rattus Norvegicus
Length = 117
Score = 75.5 bits (184), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 37/73 (50%), Positives = 52/73 (71%), Gaps = 1/73 (1%)
Query: 649 NRSLSALGDVIASLAQ-KNPHVPYRNSKLTQLLQDSLGGQAKTLMFVHISPEPDAVGETI 707
N+SLSALG+VI++LA+ HVPYR+SK+T++LQDSLGG +T + + SP ET
Sbjct: 1 NKSLSALGNVISALAEGTKTHVPYRDSKMTRILQDSLGGNCRTTIVICCSPSVFNEAETK 60
Query: 708 STLKFAERVATVE 720
STL F +R T++
Sbjct: 61 STLMFGQRAKTIK 73
>pdb|2KIN|B Chain B, Kinesin (Monomeric) From Rattus Norvegicus
Length = 100
Score = 73.2 bits (178), Expect = 8e-13, Method: Composition-based stats.
Identities = 38/77 (49%), Positives = 55/77 (71%), Gaps = 1/77 (1%)
Query: 645 AQHINRSLSALGDVIASLAQ-KNPHVPYRNSKLTQLLQDSLGGQAKTLMFVHISPEPDAV 703
A++IN+SLSALG+VI++LA+ HVPYR+SK+T++LQDSL G +T + + SP
Sbjct: 1 AKNINKSLSALGNVISALAEGTKTHVPYRDSKMTRILQDSLDGNCRTTIVICCSPSVFNE 60
Query: 704 GETISTLKFAERVATVE 720
ET STL F +R T++
Sbjct: 61 AETKSTLMFGQRAKTIK 77
>pdb|1WYP|A Chain A, Solution Structure Of The Ch Domain Of Human Calponin 1
Length = 136
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/124 (33%), Positives = 61/124 (49%), Gaps = 22/124 (17%)
Query: 50 LRKMVGVVAARDLPAEPSEEEFRLGLRSGIILCNVINKVQPGAVPKVVESPDTVLVPDGA 109
LR+ + V R + F GL+ GIILC INK+QPG+V K+ ES
Sbjct: 22 LREWIEGVTGRRIG-----NNFMDGLKDGIILCEFINKLQPGSVKKINESTQN------- 69
Query: 110 ALSAYQYFENVRNFLVAVQEMGLP---TFEASDLEQGGKSARVVNCVLALKSYGEWKQTG 166
+ EN+ NF+ A+ + G+ FEA+DL + +V + +LAL S +T
Sbjct: 70 ----WHQLENIGNFIKAITKYGVKPHDIFEANDLFENTNHTQVQSTLLALASMA---KTK 122
Query: 167 GNGV 170
GN V
Sbjct: 123 GNKV 126
>pdb|1WYN|A Chain A, Solution Structure Of The Ch Domain Of Human Calponin-2
Length = 146
Score = 58.2 bits (139), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 55/111 (49%), Gaps = 23/111 (20%)
Query: 49 WLRKMVGVVAARDLPAEPSEEEFRLGLRSGIILCNVINKVQPGAVPKVVESPDTVLVPDG 108
W+ + G+ D F+ GL+ G ILC ++NK+QPG+VPK+ S
Sbjct: 25 WIEGLTGLSIGPD---------FQKGLKDGTILCTLMNKLQPGSVPKINRS--------- 66
Query: 109 AALSAYQYFENVRNFLVAVQEMGL---PTFEASDLEQGGKSARVVNCVLAL 156
+ + EN+ NF+ A+ G+ FEA+DL + G +V +LAL
Sbjct: 67 --MQNWHQLENLSNFIKAMVSYGMNPVDLFEANDLFESGNMTQVQVSLLAL 115
>pdb|1H67|A Chain A, Nmr Structure Of The Ch Domain Of Calponin
Length = 108
Score = 55.5 bits (132), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 53/98 (54%), Gaps = 14/98 (14%)
Query: 69 EEFRLGLRSGIILCNVINKVQPGAVPKVVESPDTVLVPDGAALSAYQYFENVRNFLVAVQ 128
+ F GL+ G+ILC +INK+QPG+V KV + + + EN+ NFL A++
Sbjct: 22 DNFMDGLKDGVILCELINKLQPGSVQKVNDP-----------VQNWHKLENIGNFLRAIK 70
Query: 129 EMGLP---TFEASDLEQGGKSARVVNCVLALKSYGEWK 163
G+ FEA+DL + +V + ++AL S + K
Sbjct: 71 HYGVKPHDIFEANDLFENTNHTQVQSTLIALASQAKTK 108
>pdb|1WYR|A Chain A, Solution Structure Of The Ch Domain Of Human Rho Guanine
Nucleotide Exchange Factor 6
Length = 121
Score = 44.7 bits (104), Expect = 3e-04, Method: Composition-based stats.
Identities = 29/119 (24%), Positives = 55/119 (46%), Gaps = 11/119 (9%)
Query: 49 WLRKMVGVVAARDLPAEPSEEEFRLGLRSGIILCNVINKVQPGAVPKVVESPDTVLVPDG 108
WL + + + + +P EE + L++G++LC +IN++ PG+V K P T
Sbjct: 14 WLISLGVLESPKKTICDP-EEFLKSSLKNGVVLCKLINRLMPGSVEKFCLDPQT------ 66
Query: 109 AALSAYQYFENVRNFLVAVQEMGLPTFEASDLEQGGKSARVVNCVLALKSYGEWKQTGG 167
N+ +FL + + F+ DL G ++V++ +LA+ E + G
Sbjct: 67 ----EADCINNINDFLKGCATLQVEIFDPDDLYSGVNFSKVLSTLLAVNKATESGPSSG 121
>pdb|1P5S|A Chain A, Structure And Function Of The Calponin-Homology Domain Of
An Iqgap Protein From Schizosaccharomyces Pombe
Length = 203
Score = 43.5 bits (101), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 46/92 (50%), Gaps = 13/92 (14%)
Query: 71 FRLGLRSGIILCNVINKVQPGAVPKVVESPDTVLVPDGAALSAYQYFENVRNFLVAVQEM 130
F LR+G++L ++ K QP + K+ S + +++ +N+ FL + +
Sbjct: 78 FEQSLRNGVVLALLVQKFQPDKLIKIFYSNEL----------QFRHSDNINKFLDFIHGI 127
Query: 131 GLPT---FEASDLEQGGKSARVVNCVLALKSY 159
GLP FE +D+ +G +V+ C+ AL +
Sbjct: 128 GLPEIFHFELTDIYEGKNLPKVIYCIHALSYF 159
>pdb|1P2X|A Chain A, Crystal Structure Of The Calponin-Homology Domain Of Rng2
From Schizosaccharomyces Pombe
Length = 159
Score = 43.5 bits (101), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 46/92 (50%), Gaps = 13/92 (14%)
Query: 71 FRLGLRSGIILCNVINKVQPGAVPKVVESPDTVLVPDGAALSAYQYFENVRNFLVAVQEM 130
F LR+G++L ++ K QP + K+ S + +++ +N+ FL + +
Sbjct: 34 FEQSLRNGVVLALLVQKFQPDKLIKIFYSNEL----------QFRHSDNINKFLDFIHGI 83
Query: 131 GLPT---FEASDLEQGGKSARVVNCVLALKSY 159
GLP FE +D+ +G +V+ C+ AL +
Sbjct: 84 GLPEIFHFELTDIYEGKNLPKVIYCIHALSYF 115
>pdb|2L3G|A Chain A, Solution Nmr Structure Of Ch Domain Of Rho Guanine
Nucleotide Exchange Factor 7 From Homo Sapiens,
Northeast Structural Genomics Consortium Target Hr4495e
Length = 126
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 51/109 (46%), Gaps = 12/109 (11%)
Query: 49 WLRKMVGVVAARDLPAEPSEEEFRLGLRSGIILCNVINKVQPGAVPKVVESPDTVLVPDG 108
WL + GV+ + E + L+ G++LC ++ ++ PG + KV P
Sbjct: 20 WLITL-GVLESPKKTISDPEGFLQASLKDGVVLCRLLERLLPGTIEKVYPEPR------- 71
Query: 109 AALSAYQYFENVRNFLVAV-QEMGLPTFEASDLEQGGKSARVVNCVLAL 156
S + N+R FL + L TF+A+DL QG +V++ ++ L
Sbjct: 72 ---SESECLSNIREFLRGCGASLRLETFDANDLYQGQNFNKVLSSLVTL 117
>pdb|3I6X|A Chain A, Crystal Structure Of The Calponin Homology Domain Of
Iqgap1
pdb|3I6X|B Chain B, Crystal Structure Of The Calponin Homology Domain Of
Iqgap1
pdb|3I6X|C Chain C, Crystal Structure Of The Calponin Homology Domain Of
Iqgap1
pdb|3I6X|D Chain D, Crystal Structure Of The Calponin Homology Domain Of
Iqgap1
Length = 193
Score = 39.3 bits (90), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 51/116 (43%), Gaps = 15/116 (12%)
Query: 49 WLRKMVGVVAARDLPAEPSEEEFRLGLRSGIILCNVINKVQPGAVP--KVVESPDTVLVP 106
W+ +G DLP EE GLR+G+ L + N P V K+ + T
Sbjct: 55 WMEACLG----EDLPPTTELEE---GLRNGVYLAKLGNFFSPKVVSLKKIYDREQTRYKA 107
Query: 107 DGAALSAYQYFENVRNFLVAVQEMGLPTF---EASDLEQGGKSARVVNCVLALKSY 159
G +++ +NV +L A+ E+GLP E +D+ R + C+ AL Y
Sbjct: 108 TGLH---FRHTDNVIQWLNAMDEIGLPKIFYPETTDIYDRKNMPRCIYCIHALSLY 160
>pdb|1WYM|A Chain A, Solution Structure Of The Ch Domain Of Human Transgelin-2
Length = 155
Score = 39.3 bits (90), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 46/97 (47%), Gaps = 15/97 (15%)
Query: 65 EPSEEEFRLGLRSGIILCNVINKVQP-GAVP-KVVESPDTVLVPDGAALSAYQYFENVRN 122
+P E F+ L+ G +LC +IN + P G P K ++ A+ A++ E +
Sbjct: 38 QPGRENFQNWLKDGTVLCELINALYPEGQAPVKKIQ----------ASTMAFKQMEQISQ 87
Query: 123 FLVAVQEMGLPT---FEASDLEQGGKSARVVNCVLAL 156
FL A + G+ T F+ DL +G A V ++ L
Sbjct: 88 FLQAAERYGINTTDIFQTVDLWEGKNMACVQRTLMNL 124
>pdb|2RR8|A Chain A, Solution Structure Of Calponin Homology Domain Of Iqgap1
Length = 190
Score = 37.7 bits (86), Expect = 0.033, Method: Composition-based stats.
Identities = 33/116 (28%), Positives = 51/116 (43%), Gaps = 15/116 (12%)
Query: 49 WLRKMVGVVAARDLPAEPSEEEFRLGLRSGIILCNVINKVQPGAVP--KVVESPDTVLVP 106
W+ +G DLP EE GLR+G+ L + N P V K+ + T
Sbjct: 33 WMEACLG----EDLPPTTELEE---GLRNGVYLAKLGNFFSPKVVSLKKIYDREQTRYKA 85
Query: 107 DGAALSAYQYFENVRNFLVAVQEMGLPTF---EASDLEQGGKSARVVNCVLALKSY 159
G +++ +NV +L A+ E+GLP E +D+ R + C+ AL Y
Sbjct: 86 TGLH---FRHTDNVIQWLNAMDEIGLPKIFYPETTDIYDRKNMPRCIYCIHALSLY 138
>pdb|2WK2|A Chain A, Chitinase A From Serratia Marcescens Atcc990 In Complex
With Chitotrio-Thiazoline Dithioamide
Length = 540
Score = 31.6 bits (70), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 46/109 (42%), Gaps = 15/109 (13%)
Query: 483 TYTMTGPRELTEKSQGVNYRALSDLFLIAEQRKDIFRYDVAVQMLEIYNEQVRDLLVTDG 542
T T TGP + T ++ V+YR ++ F+ E + + YD + ++ DL+ D
Sbjct: 438 TGTATGPVKGTWENGIVDYRQIASQFMSGEWQ---YTYDATAEAPYVFKPSTGDLITFD- 493
Query: 543 SNRRLEIRNSSQTGLNVPDASLIPVSS------TADVINLMNLGQKNRA 585
+ R+ G V D L + S D++N MN N A
Sbjct: 494 -----DARSVQAKGKYVLDKQLGGLFSWEIDADNGDILNSMNASLGNSA 537
>pdb|2WLY|A Chain A, Chitinase A From Serratia Marcescens Atcc990 In Complex
With Chitotrio-Thiazoline.
pdb|2WLZ|A Chain A, Chitinase A From Serratia Marcescens Atcc990 In Complex
With Chitobio-Thiazoline.
pdb|2WM0|A Chain A, Chitinase A From Serratia Marcescens Atcc990 In Complex
With Chitobio-Thiazoline Thioamide
Length = 548
Score = 31.6 bits (70), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 46/109 (42%), Gaps = 15/109 (13%)
Query: 483 TYTMTGPRELTEKSQGVNYRALSDLFLIAEQRKDIFRYDVAVQMLEIYNEQVRDLLVTDG 542
T T TGP + T ++ V+YR ++ F+ E + + YD + ++ DL+ D
Sbjct: 438 TGTATGPVKGTWENGIVDYRQIASQFMSGEWQ---YTYDATAEAPYVFKPSTGDLITFD- 493
Query: 543 SNRRLEIRNSSQTGLNVPDASLIPVSS------TADVINLMNLGQKNRA 585
+ R+ G V D L + S D++N MN N A
Sbjct: 494 -----DARSVQAKGKYVLDKQLGGLFSWEIDADNGDILNSMNASLGNSA 537
>pdb|1NH6|A Chain A, Structure Of S. Marcescens Chitinase A, E315l, Complex
With Hexasaccharide
Length = 540
Score = 31.6 bits (70), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 46/109 (42%), Gaps = 15/109 (13%)
Query: 483 TYTMTGPRELTEKSQGVNYRALSDLFLIAEQRKDIFRYDVAVQMLEIYNEQVRDLLVTDG 542
T T TGP + T ++ V+YR ++ F+ E + + YD + ++ DL+ D
Sbjct: 438 TGTATGPVKGTWENGIVDYRQIASQFMSGEWQ---YTYDATAEAPYVFKPSTGDLITFD- 493
Query: 543 SNRRLEIRNSSQTGLNVPDASLIPVSS------TADVINLMNLGQKNRA 585
+ R+ G V D L + S D++N MN N A
Sbjct: 494 -----DARSVQAKGKYVLDKQLGGLFSWEIDADNGDILNSMNASLGNSA 537
>pdb|1CTN|A Chain A, Crystal Structure Of A Bacterial Chitinase At 2.3
Angstroms Resolution
Length = 540
Score = 31.6 bits (70), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 46/109 (42%), Gaps = 15/109 (13%)
Query: 483 TYTMTGPRELTEKSQGVNYRALSDLFLIAEQRKDIFRYDVAVQMLEIYNEQVRDLLVTDG 542
T T TGP + T ++ V+YR ++ F+ E + + YD + ++ DL+ D
Sbjct: 438 TGTATGPVKGTWENGIVDYRQIAGQFMSGEWQ---YTYDATAEAPYVFKPSTGDLITFD- 493
Query: 543 SNRRLEIRNSSQTGLNVPDASLIPVSS------TADVINLMNLGQKNRA 585
+ R+ G V D L + S D++N MN N A
Sbjct: 494 -----DARSVQAKGKYVLDKQLGGLFSWEIDADNGDILNSMNASLGNSA 537
>pdb|1EDQ|A Chain A, Crystal Structure Of Chitinase A From S. Marcescens At
1.55 Angstroms
pdb|1FFQ|A Chain A, Crystal Structure Of Chitinase A Complexed With
Allosamidin
Length = 540
Score = 31.6 bits (70), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 46/109 (42%), Gaps = 15/109 (13%)
Query: 483 TYTMTGPRELTEKSQGVNYRALSDLFLIAEQRKDIFRYDVAVQMLEIYNEQVRDLLVTDG 542
T T TGP + T ++ V+YR ++ F+ E + + YD + ++ DL+ D
Sbjct: 438 TGTATGPVKGTWENGIVDYRQIAGQFMSGEWQ---YTYDATAEAPYVFKPSTGDLITFD- 493
Query: 543 SNRRLEIRNSSQTGLNVPDASLIPVSS------TADVINLMNLGQKNRA 585
+ R+ G V D L + S D++N MN N A
Sbjct: 494 -----DARSVQAKGKYVLDKQLGGLFSWEIDADNGDILNSMNASLGNSA 537
>pdb|1RD6|A Chain A, Crystal Structure Of S. Marcescens Chitinase A Mutant
W167a
pdb|1X6L|A Chain A, Crystal Structure Of S. Marcescens Chitinase A Mutant
W167a
pdb|1X6N|A Chain A, Crystal Structure Of S. Marcescens Chitinase A Mutant
W167a In Complex With Allosamidin
Length = 563
Score = 31.6 bits (70), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 46/109 (42%), Gaps = 15/109 (13%)
Query: 483 TYTMTGPRELTEKSQGVNYRALSDLFLIAEQRKDIFRYDVAVQMLEIYNEQVRDLLVTDG 542
T T TGP + T ++ V+YR ++ F+ E + + YD + ++ DL+ D
Sbjct: 461 TGTATGPVKGTWENGIVDYRQIASQFMSGEWQ---YTYDATAEAPYVFKPSTGDLITFD- 516
Query: 543 SNRRLEIRNSSQTGLNVPDASLIPVSS------TADVINLMNLGQKNRA 585
+ R+ G V D L + S D++N MN N A
Sbjct: 517 -----DARSVQAKGKYVLDKQLGGLFSWEIDADNGDILNSMNASLGNSA 560
>pdb|1EHN|A Chain A, Crystal Structure Of Chitinase A Mutant E315q Complexed
With Octa-N- Acetylchitooctaose (Nag)8
Length = 540
Score = 31.6 bits (70), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 46/109 (42%), Gaps = 15/109 (13%)
Query: 483 TYTMTGPRELTEKSQGVNYRALSDLFLIAEQRKDIFRYDVAVQMLEIYNEQVRDLLVTDG 542
T T TGP + T ++ V+YR ++ F+ E + + YD + ++ DL+ D
Sbjct: 438 TGTATGPVKGTWENGIVDYRQIAGQFMSGEWQ---YTYDATAEAPYVFKPSTGDLITFD- 493
Query: 543 SNRRLEIRNSSQTGLNVPDASLIPVSS------TADVINLMNLGQKNRA 585
+ R+ G V D L + S D++N MN N A
Sbjct: 494 -----DARSVQAKGKYVLDKQLGGLFSWEIDADNGDILNSMNASLGNSA 537
>pdb|1FFR|A Chain A, Crystal Structure Of Chitinase A Mutant Y390f Complexed
With Hexa-n- Acetylchitohexaose (nag)6
Length = 540
Score = 31.6 bits (70), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 46/109 (42%), Gaps = 15/109 (13%)
Query: 483 TYTMTGPRELTEKSQGVNYRALSDLFLIAEQRKDIFRYDVAVQMLEIYNEQVRDLLVTDG 542
T T TGP + T ++ V+YR ++ F+ E + + YD + ++ DL+ D
Sbjct: 438 TGTATGPVKGTWENGIVDYRQIAGQFMSGEWQ---YTYDATAEAPYVFKPSTGDLITFD- 493
Query: 543 SNRRLEIRNSSQTGLNVPDASLIPVSS------TADVINLMNLGQKNRA 585
+ R+ G V D L + S D++N MN N A
Sbjct: 494 -----DARSVQAKGKYVLDKQLGGLFSWEIDADNGDILNSMNASLGNSA 537
>pdb|1EIB|A Chain A, Crystal Structure Of Chitinase A Mutant D313a Complexed
With Octa-N- Acetylchitooctaose (Nag)8
Length = 540
Score = 31.6 bits (70), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 46/109 (42%), Gaps = 15/109 (13%)
Query: 483 TYTMTGPRELTEKSQGVNYRALSDLFLIAEQRKDIFRYDVAVQMLEIYNEQVRDLLVTDG 542
T T TGP + T ++ V+YR ++ F+ E + + YD + ++ DL+ D
Sbjct: 438 TGTATGPVKGTWENGIVDYRQIAGQFMSGEWQ---YTYDATAEAPYVFKPSTGDLITFD- 493
Query: 543 SNRRLEIRNSSQTGLNVPDASLIPVSS------TADVINLMNLGQKNRA 585
+ R+ G V D L + S D++N MN N A
Sbjct: 494 -----DARSVQAKGKYVLDKQLGGLFSWEIDADNGDILNSMNASLGNSA 537
>pdb|1K9T|A Chain A, Chitinase A Complexed With Tetra-N-Acetylchitotriose
Length = 540
Score = 31.6 bits (70), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 46/109 (42%), Gaps = 15/109 (13%)
Query: 483 TYTMTGPRELTEKSQGVNYRALSDLFLIAEQRKDIFRYDVAVQMLEIYNEQVRDLLVTDG 542
T T TGP + T ++ V+YR ++ F+ E + + YD + ++ DL+ D
Sbjct: 438 TGTATGPVKGTWENGIVDYRQIAGQFMSGEWQ---YTYDATAEAPYVFKPSTGDLITFD- 493
Query: 543 SNRRLEIRNSSQTGLNVPDASLIPVSS------TADVINLMNLGQKNRA 585
+ R+ G V D L + S D++N MN N A
Sbjct: 494 -----DARSVQAKGKYVLDKQLGGLFSWEIDADNGDILNSMNASLGNSA 537
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.313 0.130 0.371
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,064,411
Number of Sequences: 62578
Number of extensions: 1131318
Number of successful extensions: 2203
Number of sequences better than 100.0: 95
Number of HSP's better than 100.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 26
Number of HSP's that attempted gapping in prelim test: 1926
Number of HSP's gapped (non-prelim): 104
length of query: 1009
length of database: 14,973,337
effective HSP length: 108
effective length of query: 901
effective length of database: 8,214,913
effective search space: 7401636613
effective search space used: 7401636613
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 56 (26.2 bits)