Query 001820
Match_columns 1009
No_of_seqs 624 out of 2847
Neff 5.4
Searched_HMMs 46136
Date Fri Mar 29 10:05:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001820.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001820hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0239 Kinesin (KAR3 subfamil 100.0 4.5E-92 9.8E-97 839.2 35.8 425 321-748 239-669 (670)
2 KOG4280 Kinesin-like protein [ 100.0 2.3E-85 5.1E-90 759.5 28.2 358 392-754 4-372 (574)
3 KOG0245 Kinesin-like protein [ 100.0 6.1E-85 1.3E-89 767.9 24.2 356 393-752 4-382 (1221)
4 KOG0243 Kinesin-like protein [ 100.0 4.4E-83 9.5E-88 766.4 30.1 361 392-754 48-427 (1041)
5 PLN03188 kinesin-12 family pro 100.0 2.3E-80 5E-85 748.3 39.6 393 392-796 97-523 (1320)
6 cd01370 KISc_KIP3_like Kinesin 100.0 1.1E-78 2.4E-83 681.7 35.6 320 394-719 1-338 (338)
7 cd01373 KISc_KLP2_like Kinesin 100.0 1.1E-77 2.4E-82 673.3 36.8 320 393-719 1-337 (337)
8 KOG0240 Kinesin (SMY1 subfamil 100.0 6.2E-78 1.4E-82 681.3 26.3 330 392-729 6-340 (607)
9 cd01368 KISc_KIF23_like Kinesi 100.0 2.6E-76 5.6E-81 664.2 36.5 314 394-717 2-345 (345)
10 KOG0242 Kinesin-like protein [ 100.0 2.9E-77 6.3E-82 714.5 29.2 355 393-755 6-369 (675)
11 cd01365 KISc_KIF1A_KIF1B Kines 100.0 8E-75 1.7E-79 654.6 38.2 327 393-723 1-353 (356)
12 KOG0241 Kinesin-like protein [ 100.0 7E-76 1.5E-80 678.0 26.9 356 392-752 3-385 (1714)
13 cd01367 KISc_KIF2_like Kinesin 100.0 2E-74 4.4E-79 643.3 34.5 313 393-717 1-322 (322)
14 cd01376 KISc_KID_like Kinesin 100.0 7.2E-74 1.6E-78 638.0 36.0 313 394-717 1-319 (319)
15 cd01364 KISc_BimC_Eg5 Kinesin 100.0 3E-73 6.5E-78 640.7 38.2 332 393-727 2-350 (352)
16 cd01369 KISc_KHC_KIF5 Kinesin 100.0 2.4E-73 5.3E-78 634.9 36.8 320 393-719 2-325 (325)
17 cd01371 KISc_KIF3 Kinesin moto 100.0 2.6E-73 5.7E-78 637.0 36.9 324 393-719 1-333 (333)
18 cd01366 KISc_C_terminal Kinesi 100.0 9.1E-73 2E-77 631.1 38.8 324 392-722 1-329 (329)
19 cd01374 KISc_CENP_E Kinesin mo 100.0 4.3E-73 9.3E-78 632.1 35.8 314 394-719 1-321 (321)
20 cd01372 KISc_KIF4 Kinesin moto 100.0 1.5E-72 3.3E-77 632.2 36.8 320 394-720 2-341 (341)
21 cd01375 KISc_KIF9_like Kinesin 100.0 1.8E-72 4E-77 630.4 36.0 319 394-717 1-334 (334)
22 cd00106 KISc Kinesin motor dom 100.0 8.1E-69 1.8E-73 598.0 38.3 320 394-717 1-328 (328)
23 smart00129 KISc Kinesin motor, 100.0 2.3E-68 5.1E-73 596.5 38.0 324 394-724 1-333 (335)
24 PF00225 Kinesin: Kinesin moto 100.0 1.7E-68 3.7E-73 597.0 26.0 318 400-719 1-335 (335)
25 KOG0247 Kinesin-like protein [ 100.0 4.9E-65 1.1E-69 587.9 25.3 328 390-722 28-439 (809)
26 KOG0246 Kinesin-like protein [ 100.0 2.7E-64 5.8E-69 568.3 29.4 326 393-724 208-546 (676)
27 KOG0244 Kinesin-like protein [ 100.0 4.7E-63 1E-67 586.2 9.1 341 401-751 1-350 (913)
28 COG5059 KIP1 Kinesin-like prot 100.0 3.3E-59 7.1E-64 553.8 29.4 346 391-753 20-372 (568)
29 cd01363 Motor_domain Myosin an 100.0 2.6E-49 5.6E-54 409.3 20.5 176 453-698 8-186 (186)
30 KOG2046 Calponin [Cytoskeleton 99.9 1.5E-24 3.2E-29 221.9 12.6 138 22-173 1-142 (193)
31 COG5199 SCP1 Calponin [Cytoske 99.7 1.1E-17 2.3E-22 163.6 9.2 109 41-168 13-124 (178)
32 cd00014 CH Calponin homology d 99.6 2.7E-15 5.9E-20 140.5 8.1 103 42-160 2-106 (107)
33 COG5261 IQG1 Protein involved 99.5 2.8E-14 6E-19 168.8 8.6 118 30-165 33-153 (1054)
34 smart00033 CH Calponin homolog 99.5 9.6E-14 2.1E-18 128.8 7.6 99 43-156 2-103 (103)
35 KOG2128 Ras GTPase-activating 99.5 6.4E-14 1.4E-18 173.7 7.8 117 28-162 25-148 (1401)
36 KOG2996 Rho guanine nucleotide 99.5 9.6E-14 2.1E-18 158.7 8.0 107 45-161 6-120 (865)
37 PF00307 CH: Calponin homology 99.3 2.6E-12 5.7E-17 120.4 9.1 106 43-161 1-108 (108)
38 KOG0532 Leucine-rich repeat (L 99.3 2.7E-12 5.8E-17 148.7 8.0 108 41-158 572-684 (722)
39 COG5059 KIP1 Kinesin-like prot 99.0 2.8E-12 6E-17 154.0 -10.0 268 379-663 292-566 (568)
40 PF11971 CAMSAP_CH: CAMSAP CH 97.8 2.8E-05 6E-10 71.8 4.9 71 63-142 8-83 (85)
41 KOG0046 Ca2+-binding actin-bun 97.5 9E-05 2E-09 86.3 4.0 102 43-154 121-228 (627)
42 PF06395 CDC24: CDC24 Calponin 97.0 0.0022 4.8E-08 59.7 7.2 81 67-156 2-88 (89)
43 COG0556 UvrB Helicase subunit 93.6 0.15 3.3E-06 60.9 7.0 95 436-535 3-101 (663)
44 TIGR01242 26Sp45 26S proteasom 93.0 0.16 3.5E-06 58.6 6.2 17 470-486 157-173 (364)
45 PF00308 Bac_DnaA: Bacterial d 91.6 0.072 1.6E-06 57.4 1.0 51 436-488 3-53 (219)
46 PRK03992 proteasome-activating 90.9 0.59 1.3E-05 54.7 7.8 18 469-486 165-182 (389)
47 KOG0046 Ca2+-binding actin-bun 89.8 0.66 1.4E-05 55.3 6.7 84 46-145 393-480 (627)
48 COG5069 SAC6 Ca2+-binding acti 88.0 0.62 1.3E-05 54.9 4.8 83 42-134 126-209 (612)
49 PRK06893 DNA replication initi 87.6 0.35 7.5E-06 52.3 2.4 48 436-488 11-58 (229)
50 COG2805 PilT Tfp pilus assembl 87.3 0.3 6.4E-06 55.2 1.7 30 458-487 114-143 (353)
51 PRK06620 hypothetical protein; 87.1 0.25 5.4E-06 53.2 1.0 49 436-487 11-62 (214)
52 PRK08084 DNA replication initi 87.1 0.35 7.6E-06 52.6 2.1 48 436-488 17-64 (235)
53 PRK12377 putative replication 86.9 0.41 9E-06 52.8 2.6 49 439-488 72-120 (248)
54 PRK14086 dnaA chromosomal repl 85.9 0.34 7.3E-06 59.7 1.4 52 435-488 282-333 (617)
55 PRK08116 hypothetical protein; 85.9 0.41 9E-06 53.2 1.9 52 436-488 80-133 (268)
56 PRK07952 DNA replication prote 85.5 0.51 1.1E-05 52.0 2.4 50 438-488 69-118 (244)
57 PRK05642 DNA replication initi 85.0 0.57 1.2E-05 50.9 2.5 51 436-488 14-64 (234)
58 PTZ00454 26S protease regulato 84.8 2.2 4.8E-05 50.3 7.3 50 437-486 141-196 (398)
59 PRK14088 dnaA chromosomal repl 84.3 0.49 1.1E-05 56.3 1.7 51 435-488 99-149 (440)
60 COG2804 PulE Type II secretory 84.3 0.47 1E-05 56.8 1.5 31 458-488 247-277 (500)
61 TIGR00362 DnaA chromosomal rep 84.1 0.55 1.2E-05 55.0 1.9 52 435-488 104-155 (405)
62 TIGR03420 DnaA_homol_Hda DnaA 83.3 0.81 1.8E-05 48.4 2.7 47 436-487 10-56 (226)
63 PRK00149 dnaA chromosomal repl 82.6 0.64 1.4E-05 55.3 1.7 52 435-488 116-167 (450)
64 PRK08903 DnaA regulatory inact 82.5 0.92 2E-05 48.5 2.7 48 436-487 13-60 (227)
65 PRK06835 DNA replication prote 82.3 0.62 1.3E-05 53.5 1.4 37 451-488 166-202 (329)
66 PRK14087 dnaA chromosomal repl 81.7 0.76 1.6E-05 54.9 1.9 50 437-488 111-160 (450)
67 PRK09087 hypothetical protein; 81.4 0.75 1.6E-05 49.9 1.6 47 436-487 16-62 (226)
68 TIGR02928 orc1/cdc6 family rep 81.0 1.1 2.3E-05 51.2 2.8 39 448-486 18-57 (365)
69 KOG0517 Beta-spectrin [Cytoske 80.4 5.7 0.00012 53.6 9.0 81 45-143 52-134 (2473)
70 PRK00411 cdc6 cell division co 79.3 1.4 3.1E-05 50.9 3.0 39 448-486 33-72 (394)
71 PF04851 ResIII: Type III rest 78.6 1.1 2.3E-05 45.1 1.5 29 460-488 15-44 (184)
72 TIGR02903 spore_lon_C ATP-depe 78.5 10 0.00022 47.4 10.2 27 460-486 166-192 (615)
73 COG1474 CDC6 Cdc6-related prot 77.6 1.5 3.4E-05 51.0 2.7 32 455-486 27-59 (366)
74 COG1484 DnaC DNA replication p 77.6 1.6 3.5E-05 48.3 2.7 49 438-488 76-124 (254)
75 PRK08939 primosomal protein Dn 77.4 1.3 2.8E-05 50.4 1.9 51 438-488 124-175 (306)
76 PRK08727 hypothetical protein; 75.7 1.7 3.6E-05 47.3 2.1 46 436-488 14-60 (233)
77 PRK08181 transposase; Validate 75.5 1.7 3.8E-05 48.5 2.2 21 466-488 105-125 (269)
78 cd00009 AAA The AAA+ (ATPases 75.3 1.7 3.7E-05 41.1 1.9 25 462-486 12-36 (151)
79 PF07926 TPR_MLP1_2: TPR/MLP1/ 74.9 28 0.00061 34.8 10.4 74 315-391 58-131 (132)
80 PRK06526 transposase; Provisio 74.0 1.5 3.3E-05 48.5 1.3 21 466-488 97-117 (254)
81 cd00046 DEXDc DEAD-like helica 73.7 1.2 2.6E-05 41.7 0.3 17 472-488 3-19 (144)
82 PF08581 Tup_N: Tup N-terminal 72.4 82 0.0018 29.2 11.8 45 321-365 30-74 (79)
83 COG0593 DnaA ATPase involved i 72.2 1.9 4.2E-05 50.9 1.6 52 435-488 81-132 (408)
84 PTZ00112 origin recognition co 72.1 1.4 3.1E-05 56.1 0.6 33 454-486 764-798 (1164)
85 PRK13894 conjugal transfer ATP 71.4 4 8.7E-05 46.8 3.9 28 458-486 138-165 (319)
86 smart00053 DYNc Dynamin, GTPas 71.4 3.7 7.9E-05 45.3 3.5 53 567-632 86-138 (240)
87 PRK12402 replication factor C 71.3 1.9 4.1E-05 48.5 1.3 43 438-487 12-54 (337)
88 PTZ00361 26 proteosome regulat 70.9 8.2 0.00018 46.2 6.4 16 471-486 219-234 (438)
89 TIGR02538 type_IV_pilB type IV 70.4 1.9 4.2E-05 53.0 1.2 29 460-488 307-335 (564)
90 TIGR02533 type_II_gspE general 70.2 2.2 4.7E-05 51.6 1.5 30 459-488 232-261 (486)
91 PRK10436 hypothetical protein; 69.9 2.1 4.6E-05 51.4 1.3 28 460-487 209-236 (462)
92 PF00270 DEAD: DEAD/DEAH box h 69.6 2.3 5E-05 42.4 1.4 28 459-488 6-33 (169)
93 PRK12422 chromosomal replicati 69.5 2.9 6.2E-05 50.1 2.3 52 435-488 105-160 (445)
94 PRK06921 hypothetical protein; 69.4 3.1 6.8E-05 46.3 2.4 37 452-488 97-136 (266)
95 PF13245 AAA_19: Part of AAA d 69.4 2.2 4.7E-05 38.7 1.0 26 461-487 3-28 (76)
96 PF13401 AAA_22: AAA domain; P 69.2 1.4 3E-05 42.3 -0.3 18 469-486 4-21 (131)
97 PF06294 DUF1042: Domain of Un 68.5 11 0.00023 39.1 6.0 81 67-157 13-99 (158)
98 smart00382 AAA ATPases associa 68.0 1.7 3.8E-05 40.4 0.1 19 470-488 3-21 (148)
99 PF05673 DUF815: Protein of un 67.7 4.6 9.9E-05 44.8 3.2 130 438-603 24-156 (249)
100 TIGR01420 pilT_fam pilus retra 67.6 2.5 5.4E-05 48.7 1.3 28 460-487 113-140 (343)
101 PF01637 Arch_ATPase: Archaeal 67.2 2.1 4.5E-05 44.7 0.4 30 457-486 8-37 (234)
102 PF01935 DUF87: Domain of unkn 67.1 1.9 4.1E-05 46.1 0.1 57 649-706 164-220 (229)
103 PF13191 AAA_16: AAA ATPase do 67.0 1.6 3.5E-05 44.2 -0.4 33 454-486 9-41 (185)
104 COG1222 RPT1 ATP-dependent 26S 66.6 46 0.001 39.0 10.9 126 391-517 91-246 (406)
105 cd01131 PilT Pilus retraction 65.8 2.1 4.6E-05 45.3 0.2 18 470-487 2-19 (198)
106 KOG0727 26S proteasome regulat 65.3 27 0.0006 39.0 8.4 80 438-517 152-250 (408)
107 PF12846 AAA_10: AAA-like doma 65.3 2.1 4.6E-05 46.6 0.1 19 469-487 1-19 (304)
108 COG5008 PilU Tfp pilus assembl 65.1 4.1 8.8E-05 45.7 2.2 34 454-487 110-145 (375)
109 TIGR02525 plasmid_TraJ plasmid 64.6 3.3 7.2E-05 48.4 1.5 20 468-487 148-167 (372)
110 cd01129 PulE-GspE PulE/GspE Th 64.2 3.5 7.6E-05 45.9 1.5 29 459-487 70-98 (264)
111 TIGR02524 dot_icm_DotB Dot/Icm 63.9 3.3 7.2E-05 48.2 1.3 21 467-487 132-152 (358)
112 PF13604 AAA_30: AAA domain; P 63.1 3.5 7.5E-05 43.7 1.2 28 459-486 8-35 (196)
113 KOG3631 Alpha-parvin and relat 63.0 27 0.00058 39.1 7.8 111 33-161 82-196 (365)
114 TIGR03015 pepcterm_ATPase puta 62.8 4.5 9.8E-05 44.0 2.1 22 465-486 39-60 (269)
115 PF01695 IstB_IS21: IstB-like 61.7 4.6 0.0001 42.2 1.8 19 470-488 48-66 (178)
116 PF00437 T2SE: Type II/IV secr 61.2 3.2 6.9E-05 45.6 0.6 29 457-486 116-144 (270)
117 PF06309 Torsin: Torsin; Inte 60.5 3.7 8.1E-05 41.1 0.8 16 471-486 55-70 (127)
118 TIGR00635 ruvB Holliday juncti 60.4 5.3 0.00012 44.5 2.2 40 447-486 6-47 (305)
119 TIGR00631 uvrb excinuclease AB 59.9 12 0.00026 47.1 5.3 93 438-535 2-98 (655)
120 TIGR02782 TrbB_P P-type conjug 59.0 5.2 0.00011 45.4 1.7 28 458-486 122-149 (299)
121 KOG0239 Kinesin (KAR3 subfamil 58.9 2.4 5.2E-05 53.1 -1.0 87 435-540 25-111 (670)
122 PF15372 DUF4600: Domain of un 58.0 79 0.0017 32.0 9.5 90 312-401 4-115 (129)
123 PF13207 AAA_17: AAA domain; P 57.6 3.6 7.8E-05 39.1 0.2 16 471-486 1-16 (121)
124 PF00448 SRP54: SRP54-type pro 57.5 3.3 7.2E-05 44.0 -0.1 17 471-487 3-19 (196)
125 PF13479 AAA_24: AAA domain 57.1 4.4 9.6E-05 43.4 0.8 20 469-488 3-22 (213)
126 KOG0335 ATP-dependent RNA heli 56.7 4.3 9.3E-05 48.7 0.6 70 461-532 105-189 (482)
127 PRK12723 flagellar biosynthesi 56.5 8.1 0.00018 45.5 2.8 19 469-487 174-192 (388)
128 TIGR03499 FlhF flagellar biosy 55.9 8.8 0.00019 43.1 2.9 18 471-488 196-213 (282)
129 PF00004 AAA: ATPase family as 54.9 4.1 8.9E-05 38.7 0.1 15 472-486 1-15 (132)
130 PF05970 PIF1: PIF1-like helic 54.5 7.4 0.00016 45.2 2.1 37 447-486 3-39 (364)
131 PF13086 AAA_11: AAA domain; P 54.5 5.8 0.00013 41.3 1.1 27 460-487 9-35 (236)
132 KOG0728 26S proteasome regulat 54.3 1E+02 0.0022 34.7 10.4 21 384-404 70-90 (404)
133 cd01130 VirB11-like_ATPase Typ 53.4 7.4 0.00016 40.6 1.7 30 457-487 14-43 (186)
134 smart00487 DEXDc DEAD-like hel 53.4 8.1 0.00017 38.5 1.9 28 460-488 16-43 (201)
135 COG4962 CpaF Flp pilus assembl 52.3 7.2 0.00016 45.1 1.5 28 458-486 163-190 (355)
136 PF02562 PhoH: PhoH-like prote 51.7 9.7 0.00021 41.1 2.2 20 468-487 18-37 (205)
137 PRK13833 conjugal transfer pro 51.4 6.9 0.00015 45.0 1.1 27 459-486 135-161 (323)
138 PHA02544 44 clamp loader, smal 51.2 7.1 0.00015 43.8 1.2 22 466-487 39-61 (316)
139 PF05496 RuvB_N: Holliday junc 51.1 15 0.00032 40.5 3.5 42 444-485 23-66 (233)
140 TIGR02788 VirB11 P-type DNA tr 50.7 23 0.0005 40.2 5.2 29 457-486 133-161 (308)
141 PRK13851 type IV secretion sys 50.4 8.1 0.00018 44.8 1.5 31 457-488 151-181 (344)
142 KOG0989 Replication factor C, 50.4 11 0.00024 43.1 2.5 27 460-486 47-74 (346)
143 PRK13900 type IV secretion sys 50.3 8.3 0.00018 44.4 1.6 29 457-486 149-177 (332)
144 PTZ00424 helicase 45; Provisio 49.8 7.9 0.00017 44.8 1.3 26 459-486 57-82 (401)
145 PRK11776 ATP-dependent RNA hel 49.1 9.2 0.0002 45.5 1.8 25 459-485 33-57 (460)
146 PRK13342 recombination factor 49.0 8.8 0.00019 45.3 1.6 39 449-487 16-54 (413)
147 PRK04195 replication factor C 48.8 12 0.00025 45.2 2.6 37 450-486 19-56 (482)
148 cd00268 DEADc DEAD-box helicas 48.4 10 0.00022 39.3 1.8 26 459-486 28-53 (203)
149 TIGR00348 hsdR type I site-spe 48.3 11 0.00024 47.4 2.4 33 455-488 245-282 (667)
150 PF03215 Rad17: Rad17 cell cyc 48.2 9.8 0.00021 46.5 1.8 32 455-486 29-62 (519)
151 PF00910 RNA_helicase: RNA hel 47.4 5.5 0.00012 37.9 -0.4 15 472-486 1-15 (107)
152 KOG4603 TBP-1 interacting prot 47.3 1.8E+02 0.0038 30.9 10.2 18 373-390 163-180 (201)
153 PF01580 FtsK_SpoIIIE: FtsK/Sp 47.3 5.7 0.00012 41.8 -0.3 17 471-487 40-56 (205)
154 PRK00080 ruvB Holliday junctio 47.0 9.8 0.00021 43.3 1.5 40 448-487 28-69 (328)
155 PF00580 UvrD-helicase: UvrD/R 46.9 7 0.00015 42.9 0.3 21 468-488 12-32 (315)
156 PF00063 Myosin_head: Myosin h 45.7 11 0.00024 47.5 1.8 35 452-486 67-102 (689)
157 TIGR03819 heli_sec_ATPase heli 45.3 20 0.00044 41.5 3.7 30 457-487 167-196 (340)
158 PRK10884 SH3 domain-containing 45.2 73 0.0016 34.5 7.7 15 327-341 97-111 (206)
159 PRK11192 ATP-dependent RNA hel 44.9 11 0.00025 44.3 1.6 26 459-486 30-55 (434)
160 TIGR02881 spore_V_K stage V sp 44.7 17 0.00036 40.1 2.8 18 470-487 43-60 (261)
161 TIGR00763 lon ATP-dependent pr 44.6 23 0.00049 45.5 4.3 16 471-486 349-364 (775)
162 PF13671 AAA_33: AAA domain; P 44.4 8.3 0.00018 37.6 0.3 15 472-486 2-16 (143)
163 PRK06547 hypothetical protein; 44.1 16 0.00034 38.1 2.4 29 458-486 4-32 (172)
164 KOG0995 Centromere-associated 43.7 5.4E+02 0.012 32.1 15.1 45 41-91 70-119 (581)
165 PF13238 AAA_18: AAA domain; P 43.5 8.8 0.00019 36.3 0.3 15 472-486 1-15 (129)
166 PLN03025 replication factor C 43.4 13 0.00027 42.3 1.7 43 439-488 11-53 (319)
167 PRK09183 transposase/IS protei 43.2 13 0.00029 41.2 1.8 21 466-488 101-121 (259)
168 PF07728 AAA_5: AAA domain (dy 43.1 7.3 0.00016 38.1 -0.3 15 472-486 2-16 (139)
169 KOG1514 Origin recognition com 42.9 24 0.00052 44.3 3.9 38 451-488 402-441 (767)
170 KOG0926 DEAH-box RNA helicase 42.3 16 0.00034 46.4 2.3 19 468-486 270-288 (1172)
171 PRK13764 ATPase; Provisional 42.2 11 0.00024 46.8 1.0 19 469-487 257-275 (602)
172 PRK10590 ATP-dependent RNA hel 42.2 14 0.00031 44.1 1.9 26 459-486 30-55 (456)
173 PRK04837 ATP-dependent RNA hel 42.2 13 0.00028 43.8 1.5 26 459-486 37-62 (423)
174 COG1201 Lhr Lhr-like helicases 41.4 18 0.00038 46.5 2.6 26 459-486 29-54 (814)
175 TIGR03689 pup_AAA proteasome A 41.3 97 0.0021 38.1 8.7 16 471-486 218-233 (512)
176 PRK00440 rfc replication facto 41.3 12 0.00027 41.6 1.2 34 450-486 22-55 (319)
177 PHA00276 phage lambda Rz-like 41.0 68 0.0015 32.9 6.1 44 343-405 51-94 (144)
178 PF06414 Zeta_toxin: Zeta toxi 40.9 10 0.00023 39.9 0.5 20 467-486 13-32 (199)
179 PF07724 AAA_2: AAA domain (Cd 40.6 10 0.00022 39.5 0.3 17 470-486 4-20 (171)
180 PF07693 KAP_NTPase: KAP famil 40.2 16 0.00034 41.0 1.8 29 458-486 9-37 (325)
181 PRK11889 flhF flagellar biosyn 39.5 20 0.00043 42.7 2.5 18 470-487 242-259 (436)
182 PHA00729 NTP-binding motif con 39.5 20 0.00044 39.3 2.4 30 459-488 7-36 (226)
183 PRK11331 5-methylcytosine-spec 39.2 18 0.00039 43.6 2.1 35 684-722 320-356 (459)
184 COG1223 Predicted ATPase (AAA+ 39.1 11 0.00025 42.2 0.4 17 470-486 152-168 (368)
185 KOG1853 LIS1-interacting prote 39.1 2.9E+02 0.0063 31.0 10.9 23 256-278 44-66 (333)
186 PRK10536 hypothetical protein; 39.1 14 0.0003 41.4 1.1 42 437-487 51-92 (262)
187 PRK00771 signal recognition pa 39.0 28 0.00061 41.8 3.7 20 468-487 94-113 (437)
188 PRK13341 recombination factor 39.0 16 0.00035 46.5 1.8 38 450-487 33-70 (725)
189 PF05377 FlaC_arch: Flagella a 38.5 1.5E+02 0.0032 25.9 6.8 41 313-353 4-44 (55)
190 KOG3859 Septins (P-loop GTPase 38.5 16 0.00035 41.3 1.4 28 459-486 31-59 (406)
191 PF15066 CAGE1: Cancer-associa 38.4 4.6E+02 0.01 31.9 13.0 31 333-363 414-444 (527)
192 PRK11448 hsdR type I restricti 38.1 15 0.00031 49.1 1.2 29 459-488 424-452 (1123)
193 PRK14722 flhF flagellar biosyn 37.7 12 0.00026 43.9 0.4 19 469-487 137-155 (374)
194 PF08614 ATG16: Autophagy prot 37.7 1.4E+02 0.003 31.7 8.3 19 373-391 166-184 (194)
195 PRK05703 flhF flagellar biosyn 37.5 22 0.00048 42.4 2.5 18 471-488 223-240 (424)
196 COG4026 Uncharacterized protei 37.2 1.4E+02 0.0031 32.8 8.1 37 313-349 132-168 (290)
197 cd01383 MYSc_type_VIII Myosin 37.2 26 0.00057 44.3 3.2 35 452-486 74-109 (677)
198 PRK10416 signal recognition pa 36.7 27 0.00058 40.1 2.9 18 470-487 115-132 (318)
199 TIGR00614 recQ_fam ATP-depende 36.6 21 0.00045 42.9 2.1 26 459-486 18-43 (470)
200 smart00763 AAA_PrkA PrkA AAA d 36.5 29 0.00063 40.7 3.2 46 436-485 44-94 (361)
201 smart00242 MYSc Myosin. Large 36.5 25 0.00054 44.5 2.8 35 452-486 74-109 (677)
202 cd00124 MYSc Myosin motor doma 36.4 25 0.00055 44.4 2.9 35 452-486 68-103 (679)
203 KOG2543 Origin recognition com 36.1 13 0.00028 43.7 0.2 16 471-486 32-47 (438)
204 PRK14974 cell division protein 36.1 28 0.00062 40.3 3.0 20 468-487 139-158 (336)
205 PF03961 DUF342: Protein of un 36.1 2.6E+02 0.0057 33.6 11.2 43 377-428 394-438 (451)
206 PF06785 UPF0242: Uncharacteri 36.0 3.1E+02 0.0068 31.9 10.9 40 318-357 150-189 (401)
207 cd01384 MYSc_type_XI Myosin mo 36.0 26 0.00057 44.3 2.9 34 453-486 71-105 (674)
208 PF12775 AAA_7: P-loop contain 35.7 17 0.00037 40.7 1.2 28 459-487 24-51 (272)
209 cd01378 MYSc_type_I Myosin mot 35.6 27 0.00059 44.1 3.0 35 452-486 68-103 (674)
210 PRK01297 ATP-dependent RNA hel 35.4 18 0.0004 43.3 1.4 26 459-486 116-141 (475)
211 KOG0742 AAA+-type ATPase [Post 35.4 44 0.00096 39.8 4.3 44 471-516 386-443 (630)
212 TIGR00064 ftsY signal recognit 35.3 28 0.00061 39.0 2.8 19 469-487 72-90 (272)
213 PRK11634 ATP-dependent RNA hel 35.0 19 0.00041 45.2 1.4 26 459-486 35-60 (629)
214 PRK06696 uridine kinase; Valid 34.8 34 0.00073 36.8 3.2 35 452-486 5-39 (223)
215 cd01385 MYSc_type_IX Myosin mo 34.8 29 0.00064 44.0 3.1 35 452-486 76-111 (692)
216 cd01381 MYSc_type_VII Myosin m 34.8 31 0.00067 43.7 3.3 35 452-486 68-103 (671)
217 PRK10865 protein disaggregatio 34.7 24 0.00052 45.8 2.4 45 438-486 565-615 (857)
218 cd01387 MYSc_type_XV Myosin mo 34.7 29 0.00063 43.9 3.0 35 452-486 69-104 (677)
219 COG1219 ClpX ATP-dependent pro 34.6 16 0.00036 42.0 0.8 16 470-485 98-113 (408)
220 TIGR00602 rad24 checkpoint pro 34.4 19 0.00041 45.2 1.3 39 449-487 88-128 (637)
221 PF05729 NACHT: NACHT domain 34.2 16 0.00034 36.1 0.5 16 471-486 2-17 (166)
222 PF00038 Filament: Intermediat 34.1 2.7E+02 0.0058 31.4 10.4 28 322-349 222-249 (312)
223 KOG0652 26S proteasome regulat 34.0 3.7E+02 0.008 30.7 10.8 45 471-516 207-265 (424)
224 PRK11034 clpA ATP-dependent Cl 33.3 30 0.00064 44.4 2.8 37 450-486 463-505 (758)
225 cd01120 RecA-like_NTPases RecA 33.1 15 0.00031 35.9 0.1 16 472-487 2-17 (165)
226 TIGR01241 FtsH_fam ATP-depende 33.0 23 0.0005 42.9 1.7 50 437-486 51-105 (495)
227 PHA02653 RNA helicase NPH-II; 33.0 30 0.00064 43.8 2.7 24 460-485 172-195 (675)
228 PRK11637 AmiB activator; Provi 32.9 2.9E+02 0.0063 32.9 10.8 16 595-610 404-419 (428)
229 cd01382 MYSc_type_VI Myosin mo 32.7 30 0.00065 44.1 2.7 34 453-486 74-108 (717)
230 TIGR02902 spore_lonB ATP-depen 32.7 26 0.00057 43.0 2.1 41 439-486 63-103 (531)
231 PRK11664 ATP-dependent RNA hel 32.6 26 0.00056 45.2 2.2 32 453-486 6-37 (812)
232 PRK04537 ATP-dependent RNA hel 32.3 24 0.00051 43.7 1.7 26 459-486 38-63 (572)
233 PRK14723 flhF flagellar biosyn 32.3 32 0.0007 44.0 2.9 17 470-486 186-202 (767)
234 TIGR00376 DNA helicase, putati 32.0 24 0.00051 44.3 1.6 27 461-488 166-192 (637)
235 PRK11637 AmiB activator; Provi 31.9 3.3E+02 0.0071 32.5 11.0 9 931-939 405-413 (428)
236 TIGR01618 phage_P_loop phage n 31.8 16 0.00035 39.8 0.1 20 469-488 12-31 (220)
237 cd01380 MYSc_type_V Myosin mot 31.8 35 0.00075 43.3 3.0 34 453-486 69-103 (691)
238 PF00735 Septin: Septin; Inte 31.7 16 0.00035 41.1 0.1 21 466-486 1-21 (281)
239 PLN00206 DEAD-box ATP-dependen 31.6 31 0.00068 42.0 2.6 26 459-486 150-175 (518)
240 TIGR02640 gas_vesic_GvpN gas v 31.6 33 0.0007 38.0 2.5 26 459-486 13-38 (262)
241 COG1419 FlhF Flagellar GTP-bin 31.4 30 0.00066 41.0 2.3 20 559-578 258-277 (407)
242 cd01377 MYSc_type_II Myosin mo 31.4 35 0.00076 43.3 3.0 35 452-486 73-108 (693)
243 PRK00131 aroK shikimate kinase 30.4 22 0.00047 35.7 0.8 17 470-486 5-21 (175)
244 PHA02244 ATPase-like protein 30.3 38 0.00083 39.9 2.8 20 465-486 117-136 (383)
245 TIGR01817 nifA Nif-specific re 30.3 26 0.00057 42.8 1.6 45 437-486 192-236 (534)
246 PF13173 AAA_14: AAA domain 30.3 18 0.0004 35.2 0.2 16 471-486 4-19 (128)
247 cd01123 Rad51_DMC1_radA Rad51_ 30.2 29 0.00064 37.0 1.8 28 459-486 6-36 (235)
248 COG2433 Uncharacterized conser 30.1 4E+02 0.0088 33.4 11.2 23 69-91 57-79 (652)
249 TIGR02639 ClpA ATP-dependent C 30.1 34 0.00073 43.6 2.6 37 450-486 459-501 (731)
250 PF06048 DUF927: Domain of unk 30.0 36 0.00077 38.3 2.5 28 458-486 183-210 (286)
251 CHL00081 chlI Mg-protoporyphyr 29.6 18 0.0004 42.1 0.1 46 435-487 11-56 (350)
252 KOG2077 JNK/SAPK-associated pr 29.4 1E+02 0.0023 37.9 6.1 43 662-707 630-672 (832)
253 PRK12724 flagellar biosynthesi 29.3 39 0.00084 40.5 2.7 18 470-487 224-241 (432)
254 KOG0354 DEAD-box like helicase 29.1 38 0.00082 43.0 2.7 43 441-486 44-93 (746)
255 COG2256 MGS1 ATPase related to 29.1 28 0.00062 41.2 1.5 37 449-485 28-64 (436)
256 PF02456 Adeno_IVa2: Adenoviru 29.0 20 0.00044 41.1 0.3 16 472-487 90-105 (369)
257 KOG1962 B-cell receptor-associ 28.8 2.3E+02 0.005 31.1 8.2 20 370-389 191-210 (216)
258 TIGR02688 conserved hypothetic 28.7 42 0.00092 40.3 2.9 54 457-513 199-252 (449)
259 PF13555 AAA_29: P-loop contai 28.7 18 0.0004 31.8 -0.0 15 472-486 26-40 (62)
260 KOG0736 Peroxisome assembly fa 28.7 52 0.0011 42.0 3.7 24 493-516 783-806 (953)
261 PRK06995 flhF flagellar biosyn 28.6 20 0.00044 43.5 0.2 18 470-487 257-274 (484)
262 TIGR01389 recQ ATP-dependent D 28.6 29 0.00063 42.9 1.6 27 458-486 19-45 (591)
263 PRK04328 hypothetical protein; 28.5 36 0.00078 37.4 2.2 26 459-484 10-38 (249)
264 PF13476 AAA_23: AAA domain; P 28.4 20 0.00043 36.6 0.1 17 470-486 20-36 (202)
265 PF13851 GAS: Growth-arrest sp 28.4 5.1E+02 0.011 28.0 10.7 17 372-388 114-130 (201)
266 TIGR02237 recomb_radB DNA repa 28.3 29 0.00063 36.4 1.4 25 462-486 2-29 (209)
267 cd01850 CDC_Septin CDC/Septin. 28.3 23 0.0005 39.7 0.6 21 466-486 1-21 (276)
268 PRK11057 ATP-dependent DNA hel 28.3 36 0.00077 42.4 2.3 26 459-486 32-57 (607)
269 KOG2373 Predicted mitochondria 28.3 46 0.001 38.9 2.9 29 459-488 261-292 (514)
270 PF10236 DAP3: Mitochondrial r 28.3 38 0.00082 38.7 2.3 24 464-487 18-41 (309)
271 TIGR01359 UMP_CMP_kin_fam UMP- 28.1 24 0.00052 36.2 0.6 15 472-486 2-16 (183)
272 PLN03137 ATP-dependent DNA hel 28.1 2.4E+02 0.0051 38.2 9.5 27 458-486 466-492 (1195)
273 PRK14952 DNA polymerase III su 28.1 32 0.00068 42.9 1.8 41 439-486 11-52 (584)
274 COG1125 OpuBA ABC-type proline 28.0 21 0.00046 40.1 0.3 30 685-722 183-212 (309)
275 cd01126 TraG_VirD4 The TraG/Tr 27.5 40 0.00087 39.2 2.4 18 472-489 2-19 (384)
276 cd02021 GntK Gluconate kinase 27.4 24 0.00052 35.0 0.5 15 472-486 2-16 (150)
277 PRK07261 topology modulation p 27.3 25 0.00054 36.4 0.6 15 472-486 3-17 (171)
278 PLN00020 ribulose bisphosphate 27.3 41 0.0009 39.8 2.4 78 436-513 110-205 (413)
279 cd01379 MYSc_type_III Myosin m 27.0 44 0.00096 42.2 2.8 35 452-486 68-103 (653)
280 TIGR03345 VI_ClpV1 type VI sec 27.0 46 0.00099 43.3 3.0 37 450-486 571-613 (852)
281 CHL00176 ftsH cell division pr 27.0 36 0.00078 42.8 2.0 46 437-486 179-233 (638)
282 cd01127 TrwB Bacterial conjuga 26.9 22 0.00048 42.0 0.1 16 471-486 44-59 (410)
283 TIGR02397 dnaX_nterm DNA polym 26.7 40 0.00088 38.3 2.2 35 449-486 18-53 (355)
284 KOG0336 ATP-dependent RNA heli 26.5 53 0.0011 39.1 3.0 46 436-486 217-274 (629)
285 PRK10917 ATP-dependent DNA hel 26.5 45 0.00097 42.2 2.7 40 445-487 261-300 (681)
286 PF07106 TBPIP: Tat binding pr 26.4 3.2E+02 0.007 28.2 8.6 22 347-368 115-136 (169)
287 PRK14963 DNA polymerase III su 26.0 31 0.00067 42.1 1.2 42 439-486 12-53 (504)
288 cd01386 MYSc_type_XVIII Myosin 25.9 46 0.00099 42.8 2.6 35 452-486 68-103 (767)
289 PRK06067 flagellar accessory p 25.8 43 0.00094 36.0 2.1 28 459-486 12-42 (234)
290 PRK08118 topology modulation p 25.7 28 0.0006 36.0 0.6 14 472-485 4-17 (167)
291 cd01428 ADK Adenylate kinase ( 25.6 28 0.00061 35.8 0.6 15 472-486 2-16 (194)
292 PRK13767 ATP-dependent helicas 25.4 36 0.00079 44.3 1.7 26 459-486 39-64 (876)
293 PF07795 DUF1635: Protein of u 25.4 2.2E+02 0.0048 31.2 7.2 39 332-370 3-41 (214)
294 PF00158 Sigma54_activat: Sigm 25.4 50 0.0011 34.3 2.4 20 466-485 19-38 (168)
295 cd00464 SK Shikimate kinase (S 25.2 29 0.00063 34.2 0.6 16 471-486 1-16 (154)
296 KOG2391 Vacuolar sorting prote 24.9 2.7E+02 0.0059 32.5 8.1 55 322-380 224-278 (365)
297 PRK10820 DNA-binding transcrip 24.8 34 0.00073 41.9 1.2 46 436-486 199-244 (520)
298 PTZ00110 helicase; Provisional 24.8 37 0.00081 41.7 1.6 26 459-486 159-184 (545)
299 TIGR03158 cas3_cyano CRISPR-as 24.8 48 0.001 38.4 2.4 26 461-486 6-31 (357)
300 PRK10867 signal recognition pa 24.8 61 0.0013 39.0 3.3 19 469-487 100-118 (433)
301 KOG1803 DNA helicase [Replicat 24.6 53 0.0012 40.7 2.7 18 470-487 202-219 (649)
302 TIGR02322 phosphon_PhnN phosph 24.5 26 0.00056 35.9 0.1 16 471-486 3-18 (179)
303 PRK05580 primosome assembly pr 24.4 43 0.00094 42.4 2.1 38 444-487 143-180 (679)
304 cd02020 CMPK Cytidine monophos 24.2 31 0.00068 33.5 0.6 15 472-486 2-16 (147)
305 TIGR02746 TraC-F-type type-IV 24.2 26 0.00057 44.7 0.1 18 469-486 430-447 (797)
306 TIGR02880 cbbX_cfxQ probable R 24.2 27 0.00058 39.3 0.2 15 472-486 61-75 (284)
307 TIGR01313 therm_gnt_kin carboh 24.1 26 0.00057 35.3 0.1 14 472-485 1-14 (163)
308 PRK14961 DNA polymerase III su 24.1 47 0.001 38.6 2.1 41 439-486 14-55 (363)
309 cd08539 SAM_PNT-ESE-3-like Ste 24.1 73 0.0016 29.3 2.8 41 41-86 8-48 (74)
310 CHL00181 cbbX CbbX; Provisiona 24.0 30 0.00065 39.1 0.5 15 472-486 62-76 (287)
311 PF06745 KaiC: KaiC; InterPro 23.9 44 0.00096 35.6 1.8 25 461-485 8-35 (226)
312 PHA02624 large T antigen; Prov 23.8 53 0.0011 41.1 2.5 30 457-486 417-448 (647)
313 COG0630 VirB11 Type IV secreto 23.7 26 0.00056 40.1 -0.1 18 470-487 144-161 (312)
314 PF04728 LPP: Lipoprotein leuc 23.7 5E+02 0.011 22.8 7.6 26 325-350 5-30 (56)
315 KOG0330 ATP-dependent RNA heli 23.7 43 0.00094 39.6 1.7 26 459-486 90-115 (476)
316 PF08317 Spc7: Spc7 kinetochor 23.7 4.7E+02 0.01 30.1 10.1 31 317-347 217-247 (325)
317 KOG3000 Microtubule-binding pr 23.6 2.2E+02 0.0047 32.7 7.1 103 42-166 16-121 (295)
318 TIGR03817 DECH_helic helicase/ 23.3 49 0.0011 42.4 2.2 26 459-486 43-68 (742)
319 PRK12726 flagellar biosynthesi 23.1 30 0.00065 41.1 0.3 19 470-488 207-225 (407)
320 PF00931 NB-ARC: NB-ARC domain 23.1 63 0.0014 35.4 2.8 30 457-486 5-36 (287)
321 PF12004 DUF3498: Domain of un 23.1 28 0.0006 42.4 0.0 28 242-269 377-406 (495)
322 PRK01172 ski2-like helicase; P 23.0 49 0.0011 41.6 2.2 24 460-485 30-53 (674)
323 TIGR01069 mutS2 MutS2 family p 22.9 4.1E+02 0.0088 34.5 10.2 23 140-162 260-282 (771)
324 cd01983 Fer4_NifH The Fer4_Nif 22.9 31 0.00068 30.3 0.3 16 472-487 2-17 (99)
325 COG4942 Membrane-bound metallo 22.7 6.4E+02 0.014 30.5 10.9 25 323-347 59-83 (420)
326 PRK08233 hypothetical protein; 22.7 33 0.00073 34.8 0.5 16 471-486 5-20 (182)
327 PHA01747 putative ATP-dependen 22.7 46 0.001 39.3 1.7 31 457-487 178-208 (425)
328 TIGR01425 SRP54_euk signal rec 22.6 65 0.0014 38.7 2.9 20 468-487 99-118 (429)
329 PRK06217 hypothetical protein; 22.5 34 0.00073 35.5 0.5 15 472-486 4-18 (183)
330 PRK14721 flhF flagellar biosyn 22.5 31 0.00067 41.3 0.2 17 470-486 192-208 (420)
331 PRK09361 radB DNA repair and r 22.4 60 0.0013 34.6 2.4 29 459-487 10-41 (225)
332 TIGR03346 chaperone_ClpB ATP-d 22.4 57 0.0012 42.4 2.6 37 450-486 570-612 (852)
333 TIGR03744 traC_PFL_4706 conjug 22.4 29 0.00063 45.3 0.0 19 468-486 474-492 (893)
334 PRK15455 PrkA family serine pr 22.4 59 0.0013 40.6 2.6 40 440-483 75-117 (644)
335 cd01393 recA_like RecA is a b 22.3 52 0.0011 34.8 1.9 29 459-487 6-37 (226)
336 cd01853 Toc34_like Toc34-like 22.3 39 0.00084 37.4 1.0 40 445-486 9-48 (249)
337 cd01394 radB RadB. The archaea 22.3 53 0.0012 34.8 2.0 27 460-486 7-36 (218)
338 smart00488 DEXDc2 DEAD-like he 22.2 50 0.0011 37.3 1.9 38 446-488 9-46 (289)
339 smart00489 DEXDc3 DEAD-like he 22.2 50 0.0011 37.3 1.9 38 446-488 9-46 (289)
340 KOG0735 AAA+-type ATPase [Post 22.2 31 0.00067 43.6 0.2 50 467-516 699-761 (952)
341 PRK14951 DNA polymerase III su 22.2 46 0.001 41.7 1.6 41 439-486 14-55 (618)
342 cd00820 PEPCK_HprK Phosphoenol 22.1 33 0.00072 33.4 0.3 16 471-486 17-32 (107)
343 PRK15429 formate hydrogenlyase 22.1 46 0.00099 42.1 1.6 44 438-486 373-416 (686)
344 cd01858 NGP_1 NGP-1. Autoanti 22.1 50 0.0011 33.2 1.6 20 467-486 100-119 (157)
345 KOG0953 Mitochondrial RNA heli 22.0 40 0.00086 41.5 1.0 42 472-513 194-237 (700)
346 cd01124 KaiC KaiC is a circadi 21.9 39 0.00085 34.4 0.8 15 472-486 2-16 (187)
347 PF09731 Mitofilin: Mitochondr 21.9 8.5E+02 0.018 30.2 12.5 54 342-395 365-421 (582)
348 PF00485 PRK: Phosphoribulokin 21.7 31 0.00066 36.2 0.0 15 472-486 2-16 (194)
349 PF10923 DUF2791: P-loop Domai 21.7 67 0.0014 38.4 2.8 35 452-486 32-66 (416)
350 PF03195 DUF260: Protein of un 21.5 1.2E+02 0.0027 29.3 4.0 80 668-753 21-100 (101)
351 PRK14531 adenylate kinase; Pro 21.5 38 0.00082 35.2 0.7 16 471-486 4-19 (183)
352 cd02023 UMPK Uridine monophosp 21.5 31 0.00066 36.1 -0.0 15 472-486 2-16 (198)
353 PRK13889 conjugal transfer rel 21.4 46 0.001 43.9 1.5 27 459-486 353-379 (988)
354 KOG0729 26S proteasome regulat 21.1 46 0.001 37.6 1.2 45 471-515 213-270 (435)
355 KOG0726 26S proteasome regulat 21.1 42 0.00092 38.4 0.9 48 471-518 221-281 (440)
356 PTZ00014 myosin-A; Provisional 21.1 72 0.0016 41.4 3.1 34 453-486 166-200 (821)
357 COG5019 CDC3 Septin family pro 21.1 49 0.0011 38.8 1.5 21 466-486 20-40 (373)
358 PRK14532 adenylate kinase; Pro 20.7 43 0.00093 34.6 0.8 16 471-486 2-17 (188)
359 CHL00195 ycf46 Ycf46; Provisio 20.5 35 0.00076 41.6 0.2 17 470-486 260-276 (489)
360 TIGR00231 small_GTP small GTP- 20.4 33 0.00072 32.5 -0.0 15 472-486 4-18 (161)
361 PF10412 TrwB_AAD_bind: Type I 20.4 31 0.00066 40.6 -0.3 16 471-486 17-32 (386)
362 KOG0963 Transcription factor/C 20.4 8.1E+02 0.018 31.0 11.3 49 324-372 286-334 (629)
363 PRK05342 clpX ATP-dependent pr 20.3 68 0.0015 38.3 2.5 18 469-486 108-125 (412)
364 TIGR01360 aden_kin_iso1 adenyl 20.3 43 0.00092 34.2 0.7 16 471-486 5-20 (188)
365 TIGR02173 cyt_kin_arch cytidyl 20.2 40 0.00088 33.8 0.5 16 471-486 2-17 (171)
366 TIGR01970 DEAH_box_HrpB ATP-de 20.2 61 0.0013 42.1 2.2 27 458-486 8-34 (819)
367 TIGR00643 recG ATP-dependent D 20.2 68 0.0015 40.2 2.6 39 445-486 235-273 (630)
368 PRK13729 conjugal transfer pil 20.1 2.9E+02 0.0063 33.7 7.5 24 317-340 70-93 (475)
369 PF15397 DUF4618: Domain of un 20.0 4.6E+02 0.01 29.6 8.6 57 312-369 70-134 (258)
No 1
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=100.00 E-value=4.5e-92 Score=839.20 Aligned_cols=425 Identities=48% Similarity=0.717 Sum_probs=396.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhhHHHhhHHHHHhhhhHHH---HHHhhhhhhhhccCCCeEE
Q 001820 321 QKMIFDQQHEDIQELKHTLHTTKAGIQFMQMKFHEEFSNLGIHIHGLAHAASGYHRVL---EENRKLYNQVQDLKGSIRV 397 (1009)
Q Consensus 321 ~~~~~~~~~~~~~~l~~~l~~~k~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~---~e~r~l~n~~qelkGnIrV 397 (1009)
.+..++.++.++++|+..+..++..+..++..+++.+..+...+..|+.+...|+... ++||+|||+++||||||||
T Consensus 239 ~~~~i~~l~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~l~~~~~e~~~r~kL~N~i~eLkGnIRV 318 (670)
T KOG0239|consen 239 IKKKIQALQQELEELKAELKELNDQVSLLTREVQEALKESNTLQSDLESLEENLVEKKKEKEERRKLHNEILELKGNIRV 318 (670)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCceE
Confidence 3344889999999999999999999999999999999999999999999988888777 8999999999999999999
Q ss_pred EEEeCCCCCCCCCC-CcceEeecC-CeEEEeCCCCCCC-CceeEEeceeeCCCCChHhHHhhhHHHHHHHhcCCceeEEe
Q 001820 398 YCRVRPFLSGQSNY-LSTVDHIEE-GNITINTPSKHGK-GWKSFSFNKVYGPSATQAEVFSDMQPLIRSVLDGYNVCIFA 474 (1009)
Q Consensus 398 ~~RVRP~~~~E~~~-~~~v~~~~~-~~i~v~~p~~~gk-~~k~F~FD~VF~~~atQeeVF~~v~pLV~svLdG~N~~IfA 474 (1009)
||||||+++++... ...+...++ +.+.+..|....+ ..+.|.||+||+|.++|++||.++.|+|+++|||||+||||
T Consensus 319 ~CRvRP~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~fdkVf~p~~sQ~~VF~e~~~lv~S~lDGYnVCIFA 398 (670)
T KOG0239|consen 319 FCRVRPLLPSEKQRLQSKVIDTEEQGEVQVDSPDKGDKLEPQSFKFDKVFGPLASQDDVFEEVSPLVQSALDGYNVCIFA 398 (670)
T ss_pred EEEecCCCccccccccccccccCCcceeEeecCCCCCCCccccceeeeecCCcccHHHHHHHHHHHHHHHhcCcceeEEE
Confidence 99999999988773 344555544 5788888877665 34569999999999999999999999999999999999999
Q ss_pred ecccCCCCceeecCCCCCCccccchhhHHHHHHHHHHHHhccceeEEEEEEEEEEecceeeecccCCCCCcccccccCCC
Q 001820 475 YGQTGSGKTYTMTGPRELTEKSQGVNYRALSDLFLIAEQRKDIFRYDVAVQMLEIYNEQVRDLLVTDGSNRRLEIRNSSQ 554 (1009)
Q Consensus 475 YGqTGSGKTyTM~G~~~~~~~~~GIipRal~dLF~~~~~~~~~~~y~V~vS~lEIYnE~V~DLL~~~~~~~~L~Ire~~~ 554 (1009)
||||||||||||.|| ++.++|||||++++||..+......|.|.+.++|+|||||.|+|||.+......+.|+++..
T Consensus 399 YGQTGSGKTyTM~G~---~~~~~Giipral~~lF~~~~~~~~g~~y~~~~s~~EIYNe~i~DlL~~~~~~~k~~I~~~~~ 475 (670)
T KOG0239|consen 399 YGQTGSGKTYTMSGP---TPEDPGIIPRALEKLFRTITSLKSGWKYDKTVSMLEIYNEAIRDLLSDESYVGKLEIVDDAE 475 (670)
T ss_pred ecccCCCccccccCC---CcccCCccHHHHHHHHHHHHhhccCceEEeeeehhHHHHHHHHHhccccccccceeEEEcCC
Confidence 999999999999997 45689999999999999999988899999999999999999999997765567899999999
Q ss_pred CCccCCCCeEEEeCCHHHHHHHHHhhhcccccccccccCCCCCCceEEEEEEeeeecCCCceEEEEEEEEeccCCccccC
Q 001820 555 TGLNVPDASLIPVSSTADVINLMNLGQKNRAVGATALNDRSSRSHSCLTVHVQGKDLTSGTMYRGCMHLVDLAGSERVNK 634 (1009)
Q Consensus 555 ~g~~V~glt~v~V~S~eev~~lL~~G~~nR~vasT~~N~~SSRSH~IftI~V~~~~~~~~~~~~s~L~LVDLAGSER~~~ 634 (1009)
++.+|++++.+.|.+.+++..+|+.|..||++++|++|++|||||+||+|+|.+.+..++....|+|+|||||||||+++
T Consensus 476 ~~~~V~~~t~~~V~s~~~v~~ll~~g~~nRsv~~T~~Ne~SSRSH~v~~v~v~g~~~~t~~~~~g~l~LVDLAGSER~~~ 555 (670)
T KOG0239|consen 476 GNLMVPLLTVIKVGSSEEVDILLEIGLSNRSVASTASNERSSRSHLVFRVRIRGINELTGIRVTGVLNLVDLAGSERVSK 555 (670)
T ss_pred CceecccceEEecCCHHHHHHHHHHhhccccccccccchhhhccceEEEEEEeccccCcccccccceeEeecccCcccCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcchhhhHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCchhhHhhhhhcCCCceeeEEEecCCCCCcHHHHHHHHHHHH
Q 001820 635 SEVTGDRLKEAQHINRSLSALGDVIASLAQKNPHVPYRNSKLTQLLQDSLGGQAKTLMFVHISPEPDAVGETISTLKFAE 714 (1009)
Q Consensus 635 s~~~G~rlkEa~~INkSLsaLg~VI~ALa~k~~hIPYRdSKLT~LLqdsLGGnskT~mI~~ISP~~~~~~ETlsTLrFA~ 714 (1009)
++++|+|++|+++||+||++||+||.||++++.||||||||||+|||++|||++||+|||+|||...++.||+++|+||+
T Consensus 556 s~~tG~RlkE~Q~INkSLS~LgdVi~AL~~k~~HiPyRNSKLT~lLq~sLGG~sKTLmfv~isP~~~~~~Etl~sL~FA~ 635 (670)
T KOG0239|consen 556 SGVTGERLKEAQNINKSLSALGDVISALASKRSHIPYRNSKLTQLLQDSLGGDSKTLMFVNISPAAAALFETLCSLRFAT 635 (670)
T ss_pred CCCchhhhHHHHHhchhhhhhHHHHHHHhhcCCCCcccccchHHHhHhhhCCccceeeEEEeCccHHHHhhhhhccchHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhccccCcccccCChHHHHHHHHHHHHHHHHHH
Q 001820 715 RVATVELGAARVNKDSSDVKELKEQIASLKAALA 748 (1009)
Q Consensus 715 Rak~I~~~~~~vn~~~~~i~~L~eeI~~Lk~~L~ 748 (1009)
||+.+++|+++.+.+..+...++..+..++...+
T Consensus 636 rv~~~~lG~a~~~~~~~~~~~~~~~~~~~~~~~~ 669 (670)
T KOG0239|consen 636 RVRSVELGSARKQVSTSDDVSLKRFGQLEKLSTA 669 (670)
T ss_pred Hhhceecccccccccccchhhhhhhhhhhhhhhc
Confidence 9999999999999999988888888887776543
No 2
>KOG4280 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=2.3e-85 Score=759.47 Aligned_cols=358 Identities=42% Similarity=0.658 Sum_probs=319.2
Q ss_pred CCCeEEEEEeCCCCCCCCCCC--cce-EeecCCeEEEeCCCCCC-CCceeEEeceeeCCCCChHhHHhhh-HHHHHHHhc
Q 001820 392 KGSIRVYCRVRPFLSGQSNYL--STV-DHIEEGNITINTPSKHG-KGWKSFSFNKVYGPSATQAEVFSDM-QPLIRSVLD 466 (1009)
Q Consensus 392 kGnIrV~~RVRP~~~~E~~~~--~~v-~~~~~~~i~v~~p~~~g-k~~k~F~FD~VF~~~atQeeVF~~v-~pLV~svLd 466 (1009)
..+|+|++|+||+...+.... ..+ .....+.+.+.+|.... ...+.|+||.||+++++|++||..+ .|+|++||+
T Consensus 4 ~~~v~vvvr~rPl~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ftfD~vf~~~stQ~dvy~~~~~~lV~svl~ 83 (574)
T KOG4280|consen 4 ACKVKVVVRVRPLSAAERSELLKSILSVDPAHGRVSLKNPVAGIEGKPKSFTFDAVFDSDSTQDDVYQETVAPLVESVLE 83 (574)
T ss_pred ccceeEEEeecCCCchhhhhhhccccccccccceeeecCCcccccCCCCCceeeeeecCCCCHHHHHHHHhHHHHHHHhc
Confidence 358999999999987654421 111 12234556666654322 2567899999999999999999985 899999999
Q ss_pred CCceeEEeecccCCCCceeecCCCCCCccccchhhHHHHHHHHHHHHhccceeEEEEEEEEEEecceeeecccCCCCCcc
Q 001820 467 GYNVCIFAYGQTGSGKTYTMTGPRELTEKSQGVNYRALSDLFLIAEQRKDIFRYDVAVQMLEIYNEQVRDLLVTDGSNRR 546 (1009)
Q Consensus 467 G~N~~IfAYGqTGSGKTyTM~G~~~~~~~~~GIipRal~dLF~~~~~~~~~~~y~V~vS~lEIYnE~V~DLL~~~~~~~~ 546 (1009)
|||+||||||||||||||||.|++ ....|||||++.+||..+..+++...|.|+|||+|||||+|+|||.+.. ++.
T Consensus 84 GyNgtvFaYGQTGsGKTyTM~G~~---~~~~GiiPraf~~LF~~I~~~~~~~~f~vrvS~lEiYnE~i~DLL~~~~-~~~ 159 (574)
T KOG4280|consen 84 GYNGTVFAYGQTGSGKTYTMIGPD---PELRGLIPRAFEHLFRHIDERKEKTRFLVRVSYLEIYNESIRDLLSPVN-PKG 159 (574)
T ss_pred ccCceEEEeccCCCCCceEeeCCC---hhhCCchhHHHHHHHHHHHhccccceEEEEeehHHHHhHHHHHHhCccC-cCC
Confidence 999999999999999999999983 6789999999999999999988777999999999999999999998764 378
Q ss_pred cccccCCCCCccCCCCeEEEeCCHHHHHHHHHhhhcccccccccccCCCCCCceEEEEEEeeeec-C--CCceEEEEEEE
Q 001820 547 LEIRNSSQTGLNVPDASLIPVSSTADVINLMNLGQKNRAVGATALNDRSSRSHSCLTVHVQGKDL-T--SGTMYRGCMHL 623 (1009)
Q Consensus 547 L~Ire~~~~g~~V~glt~v~V~S~eev~~lL~~G~~nR~vasT~~N~~SSRSH~IftI~V~~~~~-~--~~~~~~s~L~L 623 (1009)
|.|++++..|+||.|++++.|.+++|++.+|..|..+|++++|.||..|||||+||||+|++... . .....+|+|+|
T Consensus 160 l~lre~p~~Gv~V~nlse~~v~s~~d~~~~l~~G~~nR~vgat~mn~~SsRSH~ift~~i~~~~~~~~~~~~~~~~rlnl 239 (574)
T KOG4280|consen 160 LELREDPKCGVYVENLSEMDVESAEDAQQLLVVGLANRRVGATSMNEESSRSHAIFTIHIESSEKSDGGLMSGRSSKLNL 239 (574)
T ss_pred ceeeEcCCCceEecCcceeecCCHHHHHHHHHHHHhhcchhhccCCcccccceEEEEEEEEeecccCCCccccccceeee
Confidence 99999999999999999999999999999999999999999999999999999999999998322 2 22467899999
Q ss_pred EeccCCccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHhcCCC-CCCCCCchhhHhhhhhcCCCceeeEEEecCCCCCc
Q 001820 624 VDLAGSERVNKSEVTGDRLKEAQHINRSLSALGDVIASLAQKNP-HVPYRNSKLTQLLQDSLGGQAKTLMFVHISPEPDA 702 (1009)
Q Consensus 624 VDLAGSER~~~s~~~G~rlkEa~~INkSLsaLg~VI~ALa~k~~-hIPYRdSKLT~LLqdsLGGnskT~mI~~ISP~~~~ 702 (1009)
||||||||..+++++|+|++||.+||+||++||+||.||++... ||||||||||+||||||||||+|+|||||+|+..+
T Consensus 240 vDLagsEr~~~tga~G~rlkEa~~IN~SLs~LG~vI~aLvd~~~~HIPYRdSkLT~LLqdSLGGN~kT~mianvsp~~~~ 319 (574)
T KOG4280|consen 240 VDLAGSERQSKTGAEGERLKEATNINLSLSALGNVISALVDGSKTHIPYRDSKLTRLLQDSLGGNSKTTMIANVSPSSDN 319 (574)
T ss_pred eeccchhhhcccCccchhhhhhcccchhHHHHHHHHHHHhccccCCCCcchhHHHHHHHHHcCCCceEEEEEecCchhhh
Confidence 99999999999999999999999999999999999999998776 99999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhccccCcccccCChH--HHHHHHHHHHHHHHHHHhhhcCc
Q 001820 703 VGETISTLKFAERVATVELGAARVNKDSS--DVKELKEQIASLKAALARKEGES 754 (1009)
Q Consensus 703 ~~ETlsTLrFA~Rak~I~~~~~~vn~~~~--~i~~L~eeI~~Lk~~L~~~~~e~ 754 (1009)
++||++||+||+|++.|++ .+.+|.++. .+++|+++|+.||.+|...+...
T Consensus 320 ~~ETlsTLrfA~Rak~I~n-k~~ined~~~~~~~~lq~ei~~Lk~~l~~~~~~~ 372 (574)
T KOG4280|consen 320 YEETLSTLRFAQRAKAIKN-KPVINEDPKDALLRELQEEIERLKKELDPGGSPG 372 (574)
T ss_pred hHHHHHHHHHHHHHHHhhc-cccccCCcchhhHHHHHHHHHHHHHhhccccCcC
Confidence 9999999999999999986 577888765 68999999999999999876543
No 3
>KOG0245 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=6.1e-85 Score=767.86 Aligned_cols=356 Identities=39% Similarity=0.601 Sum_probs=322.9
Q ss_pred CCeEEEEEeCCCCCCCCCC-CcceEeecCCeEEEeCCCCCCCCceeEEeceeeCC-------CCChHhHHhhh-HHHHHH
Q 001820 393 GSIRVYCRVRPFLSGQSNY-LSTVDHIEEGNITINTPSKHGKGWKSFSFNKVYGP-------SATQAEVFSDM-QPLIRS 463 (1009)
Q Consensus 393 GnIrV~~RVRP~~~~E~~~-~~~v~~~~~~~i~v~~p~~~gk~~k~F~FD~VF~~-------~atQeeVF~~v-~pLV~s 463 (1009)
.+|+|.||||||+..|... ..+|+.+..++++|..|... +....|+||+.|+. .++|..||+++ .++++.
T Consensus 4 ssv~VAVRVRPfn~rE~s~~~k~Vvqm~gn~ttii~~~~~-k~~~~FtfD~SYWS~d~edPhfAsQ~qVYedlg~~mL~~ 82 (1221)
T KOG0245|consen 4 SSVKVAVRVRPFNAREKSRDAKCVVQMQGNTTTIINPKGS-KDAPKFTFDYSYWSHDSEDPHFASQKQVYEDLGREMLDH 82 (1221)
T ss_pred CceEEEEEeccchhhhhhcccceEEEecCCceeeecCCCc-ccCCceecceeeecCCCCCCchhhHHHHHHHHhHHHHHH
Confidence 4799999999999998763 56888899999999887543 34455999999975 37899999997 899999
Q ss_pred HhcCCceeEEeecccCCCCceeecCCCCCCccccchhhHHHHHHHHHHHHh-ccceeEEEEEEEEEEecceeeecccCCC
Q 001820 464 VLDGYNVCIFAYGQTGSGKTYTMTGPRELTEKSQGVNYRALSDLFLIAEQR-KDIFRYDVAVQMLEIYNEQVRDLLVTDG 542 (1009)
Q Consensus 464 vLdG~N~~IfAYGqTGSGKTyTM~G~~~~~~~~~GIipRal~dLF~~~~~~-~~~~~y~V~vS~lEIYnE~V~DLL~~~~ 542 (1009)
+++|||+||||||||||||||||+|.. .++++|||||++++||..+... .....|.|.|||+|||||+|+|||+...
T Consensus 83 AfEGYN~ClFAYGQTGSGKSYTMMG~~--~~~e~GIIPrlCEeLF~ri~~nq~~~~sy~VevSymEIYcErVrDLL~~p~ 160 (1221)
T KOG0245|consen 83 AFEGYNVCLFAYGQTGSGKSYTMMGFQ--EPDEPGIIPRLCEELFSRIADNQSQQMSYSVEVSYMEIYCERVRDLLNAPK 160 (1221)
T ss_pred HhcccceEEEEeccCCCCcceeeeccC--CCCCCCchhHHHHHHHHHHhhcccccceEEEEEeehhHHHHHHHHHhhCCC
Confidence 999999999999999999999999965 3468999999999999988654 4568999999999999999999998555
Q ss_pred CCcccccccCCCCCccCCCCeEEEeCCHHHHHHHHHhhhcccccccccccCCCCCCceEEEEEEeeeecCCC----ceEE
Q 001820 543 SNRRLEIRNSSQTGLNVPDASLIPVSSTADVINLMNLGQKNRAVGATALNDRSSRSHSCLTVHVQGKDLTSG----TMYR 618 (1009)
Q Consensus 543 ~~~~L~Ire~~~~g~~V~glt~v~V~S~eev~~lL~~G~~nR~vasT~~N~~SSRSH~IftI~V~~~~~~~~----~~~~ 618 (1009)
....|++|+++..|+||.+|+.+.|+|+.|+..+|..|++.|++++|+||+.|||||+||||.+.+...... ...+
T Consensus 161 ~kg~LRVREHP~lGPYVedLS~~aV~Sy~dI~~~md~GNkqRTtAATnMNdtSSRSHaVFtIvftQk~~~~~~~l~sek~ 240 (1221)
T KOG0245|consen 161 SKGGLRVREHPILGPYVEDLSKLAVTSYADIQDLMDEGNKQRTTAATNMNDTSSRSHAVFTIVFTQKKHDQDTGLDSEKV 240 (1221)
T ss_pred CCCCceeeccCccChhHhHhhhcccccHHHHHHHHHhcchhhhhhhhccccccccceeEEEEEEEeeeccccCCCcceee
Confidence 678999999999999999999999999999999999999999999999999999999999999988765432 5678
Q ss_pred EEEEEEeccCCccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHhcC-------CCCCCCCCchhhHhhhhhcCCCceee
Q 001820 619 GCMHLVDLAGSERVNKSEVTGDRLKEAQHINRSLSALGDVIASLAQK-------NPHVPYRNSKLTQLLQDSLGGQAKTL 691 (1009)
Q Consensus 619 s~L~LVDLAGSER~~~s~~~G~rlkEa~~INkSLsaLg~VI~ALa~k-------~~hIPYRdSKLT~LLqdsLGGnskT~ 691 (1009)
|+|+|||||||||++.+++.|+|||||.+|||||++||+||+||++. ..+||||||.|||||+++|||||||+
T Consensus 241 SKIsLVDLAGSERasstGa~G~RLKEGa~INKSLtTLGkVISALAe~~~~k~~ks~fIPYRDSVLTWLLkEnLGGNSKTa 320 (1221)
T KOG0245|consen 241 SKISLVDLAGSERASSTGANGDRLKEGANINKSLTTLGKVISALAESQKGKKKKSDFIPYRDSVLTWLLKENLGGNSKTA 320 (1221)
T ss_pred eeeeEEeccCcccccccCCCccchhcccccchHHHHHHHHHHHHHHHhccCCCCCccccchHHHHHHHHHHhcCCcchhh
Confidence 99999999999999999999999999999999999999999999852 34899999999999999999999999
Q ss_pred EEEecCCCCCcHHHHHHHHHHHHHhhccccCcccccCChH--HHHHHHHHHHHHHHHHHhhhc
Q 001820 692 MFVHISPEPDAVGETISTLKFAERVATVELGAARVNKDSS--DVKELKEQIASLKAALARKEG 752 (1009)
Q Consensus 692 mI~~ISP~~~~~~ETlsTLrFA~Rak~I~~~~~~vn~~~~--~i~~L~eeI~~Lk~~L~~~~~ 752 (1009)
||++|||++-||+|||+|||||.|||.|.++ ++||+++. .|++|++||.+||..|.....
T Consensus 321 MIAAlSPAdiNyeETLSTLRYAdRAK~Iv~~-avVNEdpnaKLIRELreEv~rLksll~~~~~ 382 (1221)
T KOG0245|consen 321 MIAALSPADINYEETLSTLRYADRAKQIVNN-AVVNEDPNAKLIRELREEVARLKSLLRAQGL 382 (1221)
T ss_pred hhhccChhhcChHHHHHHHHHhhHhhhhhcc-ceeCCCccHHHHHHHHHHHHHHHHHHhcccc
Confidence 9999999999999999999999999999865 77888875 599999999999999876543
No 4
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=4.4e-83 Score=766.42 Aligned_cols=361 Identities=38% Similarity=0.589 Sum_probs=316.5
Q ss_pred CCCeEEEEEeCCCCCCCCCCCc-ceEeecC--CeEEEeCCCCCCCCceeEEeceeeCCCCChHhHHhh-hHHHHHHHhcC
Q 001820 392 KGSIRVYCRVRPFLSGQSNYLS-TVDHIEE--GNITINTPSKHGKGWKSFSFNKVYGPSATQAEVFSD-MQPLIRSVLDG 467 (1009)
Q Consensus 392 kGnIrV~~RVRP~~~~E~~~~~-~v~~~~~--~~i~v~~p~~~gk~~k~F~FD~VF~~~atQeeVF~~-v~pLV~svLdG 467 (1009)
--||+|+|||||++..|....+ .|+..++ ..|.|...-..+.-.+.|+||+||||.+.|++||+. |.|+|..|+.|
T Consensus 48 ~~NIqVivRcRp~n~~E~~~~s~~VVs~~~~~kEV~v~~~~~sk~~~k~ftFDkVFGpes~Q~d~Y~~~v~p~i~eVl~G 127 (1041)
T KOG0243|consen 48 EVNIQVIVRCRPRNDRERKSKSSVVVSCDGIRKEVAVRQTIASKQIDKTFTFDKVFGPESQQEDLYDQAVSPIIKEVLEG 127 (1041)
T ss_pred CCceEEEEEeCCCCchhhhcCCCeEEecCCCcceEEEecccccccccceeecceeeCcchhHHHHHHHHHHHHHHHHhcc
Confidence 4699999999999998876443 3444444 346665531112257899999999999999999998 69999999999
Q ss_pred CceeEEeecccCCCCceeecCCC----CCCccccchhhHHHHHHHHHHHHhccceeEEEEEEEEEEecceeeecccCCCC
Q 001820 468 YNVCIFAYGQTGSGKTYTMTGPR----ELTEKSQGVNYRALSDLFLIAEQRKDIFRYDVAVQMLEIYNEQVRDLLVTDGS 543 (1009)
Q Consensus 468 ~N~~IfAYGqTGSGKTyTM~G~~----~~~~~~~GIipRal~dLF~~~~~~~~~~~y~V~vS~lEIYnE~V~DLL~~~~~ 543 (1009)
||||||||||||+||||||+|+. +..+...||||||+.+||..++... .+|.|+|||+|+|||.|+|||+++..
T Consensus 128 yNCTIFAYGQTGTGKTyTMeG~~~~~~g~l~~~aGIIPRal~~IFd~Le~~~--~EYsvKVSfLELYNEEl~DLLa~~~~ 205 (1041)
T KOG0243|consen 128 YNCTIFAYGQTGTGKTYTMEGGERKKNGELPSEAGIIPRALRQIFDTLEAQG--AEYSVKVSFLELYNEELTDLLASEDT 205 (1041)
T ss_pred CCceEEEecCCCCCceeeeecCcccccCCCCccCCcchHHHHHHHHHHHhcC--CeEEEEEEehhhhhHHHHHhcCCccc
Confidence 99999999999999999999942 2345678999999999999998755 58999999999999999999998765
Q ss_pred C-cccccccCC-----CCCccCCCCeEEEeCCHHHHHHHHHhhhcccccccccccCCCCCCceEEEEEEeeeecCCC---
Q 001820 544 N-RRLEIRNSS-----QTGLNVPDASLIPVSSTADVINLMNLGQKNRAVGATALNDRSSRSHSCLTVHVQGKDLTSG--- 614 (1009)
Q Consensus 544 ~-~~L~Ire~~-----~~g~~V~glt~v~V~S~eev~~lL~~G~~nR~vasT~~N~~SSRSH~IftI~V~~~~~~~~--- 614 (1009)
. +.+.+..++ .+|+.|.|+.++.|+++.|++.+|.+|...|.+++|.||.+|||||+||+|+|..+..+.+
T Consensus 206 ~~~~~~~k~~~~~~~~kggV~vkGlEEi~V~~A~ei~klLekGs~kRrtAaTl~N~~SSRSHsIFsItvhike~t~~gee 285 (1041)
T KOG0243|consen 206 SDKKLRIKDDSTIVDGKGGVIVKGLEEIIVTNADEIYKLLEKGSKKRRTAATLMNDQSSRSHSIFSITVHIKENTPEGEE 285 (1041)
T ss_pred cccccccccCCcccCCcCcEEEecceeeeecchhHHHHHHHhhhhHhHHHHHHhhhhccccceEEEEEEEEecCCCcchh
Confidence 4 666666655 6899999999999999999999999999999999999999999999999999976654332
Q ss_pred ceEEEEEEEEeccCCccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCchhhHhhhhhcCCCceeeEEE
Q 001820 615 TMYRGCMHLVDLAGSERVNKSEVTGDRLKEAQHINRSLSALGDVIASLAQKNPHVPYRNSKLTQLLQDSLGGQAKTLMFV 694 (1009)
Q Consensus 615 ~~~~s~L~LVDLAGSER~~~s~~~G~rlkEa~~INkSLsaLg~VI~ALa~k~~hIPYRdSKLT~LLqdsLGGnskT~mI~ 694 (1009)
-+..|+|+||||||||.++++|+.+.|.+||..||+||.+||+||.||.++..|||||+|||||||||||||.+||+||+
T Consensus 286 lvK~GKLNLVDLAGSENI~RSGA~~~RArEAG~INqSLLTLGRVInALVe~s~HIPYRESKLTRLLQDSLGGkTKT~iIA 365 (1041)
T KOG0243|consen 286 LVKIGKLNLVDLAGSENISRSGARNGRAREAGEINQSLLTLGRVINALVEHSGHIPYRESKLTRLLQDSLGGKTKTCIIA 365 (1041)
T ss_pred hHhhcccceeeccccccccccccccchhHHhhhhhHHHHHHHHHHHHHHccCCCCCchHHHHHHHHHHHhCCCceeEEEE
Confidence 36779999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCcHHHHHHHHHHHHHhhccccCcccccCCh--HHHHHHHHHHHHHHHHHHhhhcCc
Q 001820 695 HISPEPDAVGETISTLKFAERVATVELGAARVNKDS--SDVKELKEQIASLKAALARKEGES 754 (1009)
Q Consensus 695 ~ISP~~~~~~ETlsTLrFA~Rak~I~~~~~~vn~~~--~~i~~L~eeI~~Lk~~L~~~~~e~ 754 (1009)
||||+..+++||+|||.||.||++|+++|....+-. ..+++|-.||++||.+|...+..+
T Consensus 366 TiSPa~~~lEETlSTLEYA~RAKnIkNKPevNQkl~K~~llKd~~~EIerLK~dl~AaReKn 427 (1041)
T KOG0243|consen 366 TISPAKHNLEETLSTLEYAHRAKNIKNKPEVNQKLMKKTLLKDLYEEIERLKRDLAAAREKN 427 (1041)
T ss_pred EeCCCcccHHHHHHHHHHHHHhhhccCCCccchHHHHHHHHHHHHHHHHHHHHHHHHhHhhC
Confidence 999999999999999999999999997655443433 358999999999999999887665
No 5
>PLN03188 kinesin-12 family protein; Provisional
Probab=100.00 E-value=2.3e-80 Score=748.33 Aligned_cols=393 Identities=38% Similarity=0.585 Sum_probs=327.8
Q ss_pred CCCeEEEEEeCCCCCCCCCCCcceEeecCCeEEEeCCCCCCCCceeEEeceeeCCCCChHhHHhhh-HHHHHHHhcCCce
Q 001820 392 KGSIRVYCRVRPFLSGQSNYLSTVDHIEEGNITINTPSKHGKGWKSFSFNKVYGPSATQAEVFSDM-QPLIRSVLDGYNV 470 (1009)
Q Consensus 392 kGnIrV~~RVRP~~~~E~~~~~~v~~~~~~~i~v~~p~~~gk~~k~F~FD~VF~~~atQeeVF~~v-~pLV~svLdG~N~ 470 (1009)
.++|+|||||||+...+.. ...+..+.++.+.+. .+.|.||+||+++++|++||+.+ .|+|+++++|||+
T Consensus 97 ds~VkV~VRVRPl~~~E~g-~~iV~~~s~dsl~I~--------~qtFtFD~VFdp~aTQedVFe~vv~PLV~svLdGyNa 167 (1320)
T PLN03188 97 DSGVKVIVRMKPLNKGEEG-EMIVQKMSNDSLTIN--------GQTFTFDSIADPESTQEDIFQLVGAPLVENCLAGFNS 167 (1320)
T ss_pred CCCeEEEEEcCCCCCccCC-CeeEEEcCCCeEEEe--------CcEEeCCeeeCCCCCHHHHHHHHHHHHHHHHhcCCcc
Confidence 5799999999999887643 334455566666663 36899999999999999999995 8999999999999
Q ss_pred eEEeecccCCCCceeecCCCC------CCccccchhhHHHHHHHHHHHHh-----ccceeEEEEEEEEEEecceeeeccc
Q 001820 471 CIFAYGQTGSGKTYTMTGPRE------LTEKSQGVNYRALSDLFLIAEQR-----KDIFRYDVAVQMLEIYNEQVRDLLV 539 (1009)
Q Consensus 471 ~IfAYGqTGSGKTyTM~G~~~------~~~~~~GIipRal~dLF~~~~~~-----~~~~~y~V~vS~lEIYnE~V~DLL~ 539 (1009)
||||||||||||||||+|+.. ....++|||||++++||..+... ...+.|.|+|||+|||||+|+|||+
T Consensus 168 TIFAYGQTGSGKTYTM~G~~~~~~de~~s~~e~GIIPRaledLF~~I~e~q~k~~d~~~~y~V~vSyLEIYNEkI~DLLs 247 (1320)
T PLN03188 168 SVFAYGQTGSGKTYTMWGPANGLLEEHLSGDQQGLTPRVFERLFARINEEQIKHADRQLKYQCRCSFLEIYNEQITDLLD 247 (1320)
T ss_pred eeecCCCCCCCCCEeeCCCCCcccccccccccCCchHHHHHHHHHHHHhhhhhccccccceEEEEEEEeeecCcceeccc
Confidence 999999999999999999753 13467899999999999988643 2346899999999999999999997
Q ss_pred CCCCCcccccccCCCCCccCCCCeEEEeCCHHHHHHHHHhhhcccccccccccCCCCCCceEEEEEEeeeecC--C--Cc
Q 001820 540 TDGSNRRLEIRNSSQTGLNVPDASLIPVSSTADVINLMNLGQKNRAVGATALNDRSSRSHSCLTVHVQGKDLT--S--GT 615 (1009)
Q Consensus 540 ~~~~~~~L~Ire~~~~g~~V~glt~v~V~S~eev~~lL~~G~~nR~vasT~~N~~SSRSH~IftI~V~~~~~~--~--~~ 615 (1009)
+. .+.+.|+++..+|++|.|++++.|.|.+|++.+|..|..+|++++|.+|..|||||+||+|+|...... . ..
T Consensus 248 p~--~k~L~IRED~kgGv~VeGLTEv~V~S~ED~l~LL~~G~~nR~tasT~mN~~SSRSHaIFtI~Ves~~k~~~dg~ss 325 (1320)
T PLN03188 248 PS--QKNLQIREDVKSGVYVENLTEEYVKTMKDVTQLLIKGLSNRRTGATSINAESSRSHSVFTCVVESRCKSVADGLSS 325 (1320)
T ss_pred cc--cCCceEEEcCCCCeEeCCCeEEeCCCHHHHHHHHHHHhccceeccCCCCCccCCCceeEEEEEEEeecccCCCCcc
Confidence 65 356899999999999999999999999999999999999999999999999999999999999875432 2 23
Q ss_pred eEEEEEEEEeccCCccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHhc-----CCCCCCCCCchhhHhhhhhcCCCcee
Q 001820 616 MYRGCMHLVDLAGSERVNKSEVTGDRLKEAQHINRSLSALGDVIASLAQ-----KNPHVPYRNSKLTQLLQDSLGGQAKT 690 (1009)
Q Consensus 616 ~~~s~L~LVDLAGSER~~~s~~~G~rlkEa~~INkSLsaLg~VI~ALa~-----k~~hIPYRdSKLT~LLqdsLGGnskT 690 (1009)
...|+|+|||||||||...+++.|.+++|+.+||+||++||+||.+|+. +..|||||+||||+||||+|||||+|
T Consensus 326 ~r~SkLnLVDLAGSER~kkTga~G~RLkEA~~INKSLsaLGnVI~ALae~Sq~gk~~HIPYRDSKLTrLLQDSLGGNSKT 405 (1320)
T PLN03188 326 FKTSRINLVDLAGSERQKLTGAAGDRLKEAGNINRSLSQLGNLINILAEISQTGKQRHIPYRDSRLTFLLQESLGGNAKL 405 (1320)
T ss_pred eEEEEEEEEECCCchhccccCcccHHHHHHHHHhHHHHHHHHHHHHHHHhhccCCCCcCCCCcchHHHHHHHhcCCCceE
Confidence 5679999999999999999999999999999999999999999999985 45799999999999999999999999
Q ss_pred eEEEecCCCCCcHHHHHHHHHHHHHhhccccCcccccCC-hHHHHHHHHHHHHHHHHHHhhhcCcccccc--cCCCCcc-
Q 001820 691 LMFVHISPEPDAVGETISTLKFAERVATVELGAARVNKD-SSDVKELKEQIASLKAALARKEGESEHNQY--SMSGSSE- 766 (1009)
Q Consensus 691 ~mI~~ISP~~~~~~ETlsTLrFA~Rak~I~~~~~~vn~~-~~~i~~L~eeI~~Lk~~L~~~~~e~e~~~~--~~~~~~~- 766 (1009)
+|||||||...+++||++||+||+||+.|++.+ .+|.. ..++..|+++|..|+.+|.+++........ ......+
T Consensus 406 vMIa~VSPs~~~~eETLSTLrFAsRAK~IKNkp-vvNe~~~~~vn~LrelIr~Lk~EL~rLK~~~~~p~~~n~~y~t~~~ 484 (1320)
T PLN03188 406 AMVCAISPSQSCKSETFSTLRFAQRAKAIKNKA-VVNEVMQDDVNFLREVIRQLRDELQRVKANGNNPTNPNVAYSTAWN 484 (1320)
T ss_pred EEEEecCCchhhHHHHHHHHHHHHHHhhcCccc-eeccchhhhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcccccchh
Confidence 999999999999999999999999999999765 55554 456778888999999999888876433222 1222222
Q ss_pred ------cc---cCCCCCCCCCCCCCCCCCccCCCCCCCC
Q 001820 767 ------RY---RTKPSELSPFNSNQGVGEMLGDQNSYRQ 796 (1009)
Q Consensus 767 ------~~---~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 796 (1009)
.+ ...+...-|-..+-+.++|-.|+++.+.
T Consensus 485 ~r~sl~~l~~~~l~~~~~lp~i~~d~~~~m~ide~~ve~ 523 (1320)
T PLN03188 485 ARRSLNLLKSFGLGPPPSLPHVDEDGDEEMEIDEEAVER 523 (1320)
T ss_pred HHHHHHHHHhccCCCCcCCCccccccchhhhcchhHHHH
Confidence 11 1223333343344556667777776544
No 6
>cd01370 KISc_KIP3_like Kinesin motor domain, KIP3-like subgroup. The yeast kinesin KIP3 plays a role in positioning the mitotic spindle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a sec
Probab=100.00 E-value=1.1e-78 Score=681.73 Aligned_cols=320 Identities=40% Similarity=0.637 Sum_probs=291.3
Q ss_pred CeEEEEEeCCCCCCCCCC-CcceEeecCCeEEEeCCCCC----------CCCceeEEeceeeCCCCChHhHHhhh-HHHH
Q 001820 394 SIRVYCRVRPFLSGQSNY-LSTVDHIEEGNITINTPSKH----------GKGWKSFSFNKVYGPSATQAEVFSDM-QPLI 461 (1009)
Q Consensus 394 nIrV~~RVRP~~~~E~~~-~~~v~~~~~~~i~v~~p~~~----------gk~~k~F~FD~VF~~~atQeeVF~~v-~pLV 461 (1009)
+|+|||||||+.+.|... ...++.+.++.+++.+|... ....+.|.||+||+++++|++||+.+ .|+|
T Consensus 1 ~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~f~Fd~vf~~~~~q~~vf~~~~~plv 80 (338)
T cd01370 1 SLTVAVRVRPFNEKEKQEGTRRVVKVVDDRMLVFDPKDEEDAFRNLRARRNKELKYSFDRVFDETSTQEEVYENTTKPLV 80 (338)
T ss_pred CeEEEEEcCCCChhhhhcCCceEEEEcCCCEEEEcCCcccccccchhcccCCceEEEeccccCCCCCHHHHHHHHHHHHH
Confidence 699999999999876432 23344444445555555432 22468999999999999999999985 7999
Q ss_pred HHHhcCCceeEEeecccCCCCceeecCCCCCCccccchhhHHHHHHHHHHHHhccceeEEEEEEEEEEecceeeecccCC
Q 001820 462 RSVLDGYNVCIFAYGQTGSGKTYTMTGPRELTEKSQGVNYRALSDLFLIAEQRKDIFRYDVAVQMLEIYNEQVRDLLVTD 541 (1009)
Q Consensus 462 ~svLdG~N~~IfAYGqTGSGKTyTM~G~~~~~~~~~GIipRal~dLF~~~~~~~~~~~y~V~vS~lEIYnE~V~DLL~~~ 541 (1009)
+++++|||+||||||||||||||||+|+. .++||+||++++||..++...+.+.|.|++||+|||||+|+|||++.
T Consensus 81 ~~~~~G~n~~i~ayGqtGSGKTyTm~G~~----~~~Giipr~~~~LF~~i~~~~~~~~~~v~vS~~EIyne~v~DLL~~~ 156 (338)
T cd01370 81 DGVLNGYNATVFAYGATGAGKTHTMLGTD----SDPGLMVLTMKDLFDKIEERKDDKEFEVSLSYLEIYNETIRDLLSPS 156 (338)
T ss_pred HHHHCCCCceEEeeCCCCCCCeEEEcCCC----CCCchHHHHHHHHHHhhhhcccCceEEEEEEEEEEECCEEEECCCCC
Confidence 99999999999999999999999999954 57899999999999999888878899999999999999999999765
Q ss_pred CCCcccccccCCCCCccCCCCeEEEeCCHHHHHHHHHhhhcccccccccccCCCCCCceEEEEEEeeeecC---CCceEE
Q 001820 542 GSNRRLEIRNSSQTGLNVPDASLIPVSSTADVINLMNLGQKNRAVGATALNDRSSRSHSCLTVHVQGKDLT---SGTMYR 618 (1009)
Q Consensus 542 ~~~~~L~Ire~~~~g~~V~glt~v~V~S~eev~~lL~~G~~nR~vasT~~N~~SSRSH~IftI~V~~~~~~---~~~~~~ 618 (1009)
...+.+++++.++++|.|++++.|.|++|++++|..|.++|++++|.+|..|||||+||+|+|.+.+.. ......
T Consensus 157 --~~~l~i~ed~~~~~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~i~~i~i~~~~~~~~~~~~~~~ 234 (338)
T cd01370 157 --SGPLELREDPNQGIVVAGLTEHQPKSAEEILELLMKGNRNRTQEPTEANATSSRSHAVLQITVRQKDRTASINQQVRI 234 (338)
T ss_pred --CCCceEEEcCCCCEEeCCcEEEEeCCHHHHHHHHHHHHhhcccccccccCccCcceEEEEEEEEEEecCCCCCCcEEE
Confidence 567999999999999999999999999999999999999999999999999999999999999988765 456788
Q ss_pred EEEEEEeccCCccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHhcCC---CCCCCCCchhhHhhhhhcCCCceeeEEEe
Q 001820 619 GCMHLVDLAGSERVNKSEVTGDRLKEAQHINRSLSALGDVIASLAQKN---PHVPYRNSKLTQLLQDSLGGQAKTLMFVH 695 (1009)
Q Consensus 619 s~L~LVDLAGSER~~~s~~~G~rlkEa~~INkSLsaLg~VI~ALa~k~---~hIPYRdSKLT~LLqdsLGGnskT~mI~~ 695 (1009)
|+|+|||||||||..+++..|.+++|+.+||+||++|++||.+|++++ .|||||+||||+||||+|||||+|+||+|
T Consensus 235 s~l~~VDLAGsEr~~~~~~~g~~~~E~~~IN~SL~~L~~vi~~L~~~~~~~~~ipyR~SkLT~lL~d~Lggn~~t~~I~~ 314 (338)
T cd01370 235 GKLSLIDLAGSERASATNNRGQRLKEGANINRSLLALGNCINALVDGKKKNKHIPYRDSKLTRLLKDSLGGNCKTVMIAN 314 (338)
T ss_pred EEEEEEECCCCccccccCCCCccccccchhhHHHHHHHHHHHHHHhccCCCCcCCCcCCHHHHHHHHhcCCCCeEEEEEE
Confidence 999999999999999999999999999999999999999999999887 89999999999999999999999999999
Q ss_pred cCCCCCcHHHHHHHHHHHHHhhcc
Q 001820 696 ISPEPDAVGETISTLKFAERVATV 719 (1009)
Q Consensus 696 ISP~~~~~~ETlsTLrFA~Rak~I 719 (1009)
|||...+++||++||+||+||++|
T Consensus 315 vsp~~~~~~eTl~TL~fa~ra~~I 338 (338)
T cd01370 315 ISPSSSHYEETHNTLKYANRAKNI 338 (338)
T ss_pred eCCchhhHHHHHHHHHHHHHhccC
Confidence 999999999999999999999976
No 7
>cd01373 KISc_KLP2_like Kinesin motor domain, KLP2-like subgroup. Members of this subgroup seem to play a role in mitosis and meiosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second
Probab=100.00 E-value=1.1e-77 Score=673.32 Aligned_cols=320 Identities=41% Similarity=0.620 Sum_probs=284.6
Q ss_pred CCeEEEEEeCCCCCCCCCC--CcceEeecCCeEEEeCCCCCCCCceeEEeceeeCCCCChHhHHhhh-HHHHHHHhcCCc
Q 001820 393 GSIRVYCRVRPFLSGQSNY--LSTVDHIEEGNITINTPSKHGKGWKSFSFNKVYGPSATQAEVFSDM-QPLIRSVLDGYN 469 (1009)
Q Consensus 393 GnIrV~~RVRP~~~~E~~~--~~~v~~~~~~~i~v~~p~~~gk~~k~F~FD~VF~~~atQeeVF~~v-~pLV~svLdG~N 469 (1009)
.+|||||||||+...|... ..++...++.++.+... ..+.|.||+||+++++|++||+.+ .|+|+++++|||
T Consensus 1 ~~i~V~vRvRP~~~~e~~~~~~~~v~~~~~~~~~~~~~-----~~~~f~FD~vf~~~~~q~~vy~~~~~p~v~~~~~G~n 75 (337)
T cd01373 1 PAVKVVVRIRPPNEIEADGGQGQCLKKLSSDTLVWHSH-----PPRMFTFDHVADSNTNQEDVFQSVGKPLVEDCLSGYN 75 (337)
T ss_pred CCeEEEEEcCcCChhhcccCCCeEEEEcCCCcEEeeCC-----CCcEEeCCeEeCCCCCHHHHHHHHHHHHHHHHhCCCc
Confidence 4799999999999877542 23444444455555332 257999999999999999999985 899999999999
Q ss_pred eeEEeecccCCCCceeecCCCCC----CccccchhhHHHHHHHHHHHHh----ccceeEEEEEEEEEEecceeeecccCC
Q 001820 470 VCIFAYGQTGSGKTYTMTGPREL----TEKSQGVNYRALSDLFLIAEQR----KDIFRYDVAVQMLEIYNEQVRDLLVTD 541 (1009)
Q Consensus 470 ~~IfAYGqTGSGKTyTM~G~~~~----~~~~~GIipRal~dLF~~~~~~----~~~~~y~V~vS~lEIYnE~V~DLL~~~ 541 (1009)
+||||||||||||||||+|+... ...++||+||++++||..+... .....|.|++||+|||||+|+|||.+.
T Consensus 76 ~ti~aYGqTGSGKTyTm~G~~~~~~~~~~~~~Giipr~~~~Lf~~i~~~~~~~~~~~~~~v~~S~~EIyne~v~DLL~~~ 155 (337)
T cd01373 76 GSIFAYGQTGSGKTYTMMGPSSSDDESPHGLQGVIPRIFEYLFSLIQREEEKRGDGLKFLCKCSFLEIYNEQITDLLDPT 155 (337)
T ss_pred eeEEEeCCCCCCceEEecCCCCccccccccCCCHHHHHHHHHHHHHHhhhhhcccCceEEEEEEEEeecCCEeeeCCCCC
Confidence 99999999999999999997542 2357899999999999987643 245689999999999999999999765
Q ss_pred CCCcccccccCCCCCccCCCCeEEEeCCHHHHHHHHHhhhcccccccccccCCCCCCceEEEEEEeeeecCCC--ceEEE
Q 001820 542 GSNRRLEIRNSSQTGLNVPDASLIPVSSTADVINLMNLGQKNRAVGATALNDRSSRSHSCLTVHVQGKDLTSG--TMYRG 619 (1009)
Q Consensus 542 ~~~~~L~Ire~~~~g~~V~glt~v~V~S~eev~~lL~~G~~nR~vasT~~N~~SSRSH~IftI~V~~~~~~~~--~~~~s 619 (1009)
...+.+++++.++++|+|++++.|.|.+|++++|..|..+|++++|.+|.+|||||+||+|+|.......+ ....|
T Consensus 156 --~~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~i~~i~v~~~~~~~~~~~~~~s 233 (337)
T cd01373 156 --SRNLKIREDIKKGVYVENLTEEYVSSYEDVYQVLLKGLSNRKVAATSMNSESSRSHAVFTCTIESWEKKASSTNIRTS 233 (337)
T ss_pred --CCCceEEECCCCCEEeCCCEEEEeCCHHHHHHHHHHHHhccCcccCcCCCCCCCccEEEEEEEEEeecCCCCCcEEEE
Confidence 35689999999999999999999999999999999999999999999999999999999999987664433 45679
Q ss_pred EEEEEeccCCccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHhc----CCCCCCCCCchhhHhhhhhcCCCceeeEEEe
Q 001820 620 CMHLVDLAGSERVNKSEVTGDRLKEAQHINRSLSALGDVIASLAQ----KNPHVPYRNSKLTQLLQDSLGGQAKTLMFVH 695 (1009)
Q Consensus 620 ~L~LVDLAGSER~~~s~~~G~rlkEa~~INkSLsaLg~VI~ALa~----k~~hIPYRdSKLT~LLqdsLGGnskT~mI~~ 695 (1009)
+|+|||||||||...+++.|.+++|+.+||+||++|++||.+|++ +..|||||+||||+||||+|||||+|+||||
T Consensus 234 ~l~~VDLAGSEr~~~~~~~g~~~~E~~~IN~SL~~L~~vi~aL~~~~~~~~~~ipyR~SkLT~lL~dsLggns~t~~I~~ 313 (337)
T cd01373 234 RLNLVDLAGSERQKDDGAEGVRLKEAKNINKSLSTLGHVIMALVDVAHGKQRHVPYRDSKLTFLLRDSLGGNAKTTIIAN 313 (337)
T ss_pred EEEEEECCCCCcccccCCccHhhhhhccccHHHHHHHHHHHHHHhhccCCCCccCCcccHHHHHHHHhcCCCceEEEEEE
Confidence 999999999999999999999999999999999999999999985 4689999999999999999999999999999
Q ss_pred cCCCCCcHHHHHHHHHHHHHhhcc
Q 001820 696 ISPEPDAVGETISTLKFAERVATV 719 (1009)
Q Consensus 696 ISP~~~~~~ETlsTLrFA~Rak~I 719 (1009)
|||+..+++||++||+||+||+.|
T Consensus 314 vsP~~~~~~eTl~TL~fa~rak~I 337 (337)
T cd01373 314 VSPSSKCFGETLSTLKFAQRAKLI 337 (337)
T ss_pred ECCCcccHHHHHHHHHHHHHhhcC
Confidence 999999999999999999999976
No 8
>KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton]
Probab=100.00 E-value=6.2e-78 Score=681.28 Aligned_cols=330 Identities=40% Similarity=0.627 Sum_probs=300.0
Q ss_pred CCCeEEEEEeCCCCCCCCCCCc-ceEeec--CCeEEEeCCCCCCCCceeEEeceeeCCCCChHhHHhh-hHHHHHHHhcC
Q 001820 392 KGSIRVYCRVRPFLSGQSNYLS-TVDHIE--EGNITINTPSKHGKGWKSFSFNKVYGPSATQAEVFSD-MQPLIRSVLDG 467 (1009)
Q Consensus 392 kGnIrV~~RVRP~~~~E~~~~~-~v~~~~--~~~i~v~~p~~~gk~~k~F~FD~VF~~~atQeeVF~~-v~pLV~svLdG 467 (1009)
-++|+|+||+||....|..... .++... +.++.+.. ++..+.|.||+||.|+++|++||+. +.|+|++||.|
T Consensus 6 ~~~IkV~cR~rP~n~~E~~~~~~~i~~~~~~~~~v~~~~----~~~~~~y~FDrVF~pnatQe~Vy~~~a~~Iv~dVL~G 81 (607)
T KOG0240|consen 6 ECSIKVVCRFRPLNGLENNLGSKFIDCFENGENTVVLET----TKETKTYVFDRVFSPNATQEDVYEFAAKPIVDDVLLG 81 (607)
T ss_pred CCceEEEEEeecCCchhhhcCCcCccCCCCCcceEEEec----ccccccceeeeecCCCccHHHHHHHHHHHHHHHHhcc
Confidence 4799999999999877655322 233332 44555533 2334899999999999999999998 59999999999
Q ss_pred CceeEEeecccCCCCceeecCCCCCCccccchhhHHHHHHHHHHHHhccceeEEEEEEEEEEecceeeecccCCCCCccc
Q 001820 468 YNVCIFAYGQTGSGKTYTMTGPRELTEKSQGVNYRALSDLFLIAEQRKDIFRYDVAVQMLEIYNEQVRDLLVTDGSNRRL 547 (1009)
Q Consensus 468 ~N~~IfAYGqTGSGKTyTM~G~~~~~~~~~GIipRal~dLF~~~~~~~~~~~y~V~vS~lEIYnE~V~DLL~~~~~~~~L 547 (1009)
||+||||||||||||||||.|... ++...||+||++++||..+.......+|.|+|||||||+|+++|||++. +.++
T Consensus 82 YNGTvfaYGqT~sGKTytm~G~~~-d~~~~GIipRi~~diF~~Iys~~~n~efhVkVsy~EIYmEKi~DLL~~~--k~nl 158 (607)
T KOG0240|consen 82 YNGTVFAYGQTGSGKTYTMEGIGH-DPEEMGIIPRILNDIFDHIYSMEENLEFHVKVSYFEIYMEKIRDLLDPE--KTNL 158 (607)
T ss_pred cceeEEEecCCCCCcceeecccCC-ChhhcCcHHHHHHHHHHHHhcCcccceEEEEEEeehhhhhHHHHHhCcc--cCCc
Confidence 999999999999999999999765 5566799999999999999999888999999999999999999999755 5678
Q ss_pred ccccCCCCCccCCCCeEEEeCCHHHHHHHHHhhhcccccccccccCCCCCCceEEEEEEeeeecCCCceEEEEEEEEecc
Q 001820 548 EIRNSSQTGLNVPDASLIPVSSTADVINLMNLGQKNRAVGATALNDRSSRSHSCLTVHVQGKDLTSGTMYRGCMHLVDLA 627 (1009)
Q Consensus 548 ~Ire~~~~g~~V~glt~v~V~S~eev~~lL~~G~~nR~vasT~~N~~SSRSH~IftI~V~~~~~~~~~~~~s~L~LVDLA 627 (1009)
.+.+|...+++|+|+++..|.+++++++.++.|..||+++.|.||.+|||||+||+|+|.+.+..+.....|+|.|||||
T Consensus 159 svheDK~~v~~vkG~t~~~v~s~d~v~~~i~~g~~nr~va~t~mn~~sSRSHsIF~i~VkQ~n~e~~~~~~gkLyLVDLa 238 (607)
T KOG0240|consen 159 SVHEDKNRVPYVKGVTERFVSSPDEVLDVIDEGKSNRHVAVTNMNEHSSRSHSIFLIHVKQENVEDKRKLSGKLYLVDLA 238 (607)
T ss_pred eeecccCCCceecCceeEEecCHHHHHHHHhcccccchhhhccccccccccceEEEEEEEeccccchhhccccEEEEEcc
Confidence 99999889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHhcC-CCCCCCCCchhhHhhhhhcCCCceeeEEEecCCCCCcHHHH
Q 001820 628 GSERVNKSEVTGDRLKEAQHINRSLSALGDVIASLAQK-NPHVPYRNSKLTQLLQDSLGGQAKTLMFVHISPEPDAVGET 706 (1009)
Q Consensus 628 GSER~~~s~~~G~rlkEa~~INkSLsaLg~VI~ALa~k-~~hIPYRdSKLT~LLqdsLGGnskT~mI~~ISP~~~~~~ET 706 (1009)
|||+++++++.|.-+.||.+||+||+|||+||+||+.+ ..|||||||||||||||+|||||+|.+|+|++|+..+..||
T Consensus 239 GSEkvsKtga~g~vleEaK~INkSLsaLgnvI~aLa~g~~shipYRDSKLTRILqdSLGGNsRTtlIi~csPss~n~~ET 318 (607)
T KOG0240|consen 239 GSEKVSKTGAEGAVLEEAKNINKSLSALGNVINALAEGPKSHIPYRDSKLTRILQDSLGGNSRTTLIICCSPSSLNEAET 318 (607)
T ss_pred cccccCCCCccchhHHHHhhhhhhHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhCCCcceEEEEecCCcccccccc
Confidence 99999999999999999999999999999999999998 78999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhccccCcccccCC
Q 001820 707 ISTLKFAERVATVELGAARVNKD 729 (1009)
Q Consensus 707 lsTLrFA~Rak~I~~~~~~vn~~ 729 (1009)
.+||+|+.|++.|++. +.+|.+
T Consensus 319 ~STl~fg~rak~ikN~-v~~n~e 340 (607)
T KOG0240|consen 319 KSTLRFGNRAKTIKNT-VWVNLE 340 (607)
T ss_pred ccchhhccccccccch-hhhhhH
Confidence 9999999999999854 445443
No 9
>cd01368 KISc_KIF23_like Kinesin motor domain, KIF23-like subgroup. Members of this group may play a role in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, a
Probab=100.00 E-value=2.6e-76 Score=664.16 Aligned_cols=314 Identities=39% Similarity=0.592 Sum_probs=286.5
Q ss_pred CeEEEEEeCCCCCCCCC--CCcceEeecCCeEEEeCCCCC---------CCCceeEEeceeeCCCCChHhHHhhh-HHHH
Q 001820 394 SIRVYCRVRPFLSGQSN--YLSTVDHIEEGNITINTPSKH---------GKGWKSFSFNKVYGPSATQAEVFSDM-QPLI 461 (1009)
Q Consensus 394 nIrV~~RVRP~~~~E~~--~~~~v~~~~~~~i~v~~p~~~---------gk~~k~F~FD~VF~~~atQeeVF~~v-~pLV 461 (1009)
+|+|||||||+.+.|.. ...++...+++++++..|... ....+.|.||+||+++++|++||+.+ .|+|
T Consensus 2 ~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~f~Fd~vf~~~~tq~~vy~~~~~p~v 81 (345)
T cd01368 2 PVKVYLRVRPLSKDELESEDEGCIEVINSTTIQLHPPKGSAARKSERNGGQKETKFSFSKVFGPNTTQKEFFEGTALPLV 81 (345)
T ss_pred CEEEEEEeCcCCchhhccCCCceEEEcCCCEEEEeCCccccccccccccCCCceEeecCeEECCCCCHHHHHHHHHHHHH
Confidence 79999999999987654 344566667888888877541 22578999999999999999999985 8999
Q ss_pred HHHhcCCceeEEeecccCCCCceeecCCCCCCccccchhhHHHHHHHHHHHHhccceeEEEEEEEEEEecceeeecccCC
Q 001820 462 RSVLDGYNVCIFAYGQTGSGKTYTMTGPRELTEKSQGVNYRALSDLFLIAEQRKDIFRYDVAVQMLEIYNEQVRDLLVTD 541 (1009)
Q Consensus 462 ~svLdG~N~~IfAYGqTGSGKTyTM~G~~~~~~~~~GIipRal~dLF~~~~~~~~~~~y~V~vS~lEIYnE~V~DLL~~~ 541 (1009)
+++++|||+||||||||||||||||+|+. .++||+||++++||..+.. |.|.|||+|||||+|+|||++.
T Consensus 82 ~~~l~G~n~ti~aYGqtGSGKTyTm~G~~----~~~Gli~r~~~~lF~~~~~------~~v~~S~~EIyne~v~DLL~~~ 151 (345)
T cd01368 82 QDLLKGKNSLLFTYGVTNSGKTYTMQGSP----GDGGILPRSLDVIFNSIGG------YSVFVSYVEIYNNYIYDLLEDS 151 (345)
T ss_pred HHHhCCCceEEEEeCCCCCCCeEEecCCC----CCCchHHHHHHHHHHHHHh------eeEEEEEEEEeCCEeEeCCCCc
Confidence 99999999999999999999999999954 6789999999999998865 8999999999999999999875
Q ss_pred CC----CcccccccCCCCCccCCCCeEEEeCCHHHHHHHHHhhhcccccccccccCCCCCCceEEEEEEeeeecCC----
Q 001820 542 GS----NRRLEIRNSSQTGLNVPDASLIPVSSTADVINLMNLGQKNRAVGATALNDRSSRSHSCLTVHVQGKDLTS---- 613 (1009)
Q Consensus 542 ~~----~~~L~Ire~~~~g~~V~glt~v~V~S~eev~~lL~~G~~nR~vasT~~N~~SSRSH~IftI~V~~~~~~~---- 613 (1009)
.. .+.+.|+++..++++|.|++++.|.|++|++++|..|.++|++++|.+|.+|||||+||+|+|.+.+...
T Consensus 152 ~~~~~~~~~l~i~ed~~~~~~i~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~N~~SSRSH~i~~i~v~~~~~~~~~~~ 231 (345)
T cd01368 152 PSSTKKRQSLRLREDHNGNMYVAGLTEVEVSSTEEAREVFKRGQKNRRVAGTKLNRESSRSHSVFTIKLVQAPGDSDGDV 231 (345)
T ss_pred cccccCCCceEEEECCCCCEEecCCEEEEeCCHHHHHHHHHHhhccceeccccCcCCCCCceEEEEEEEEEeccCccccc
Confidence 43 3579999999999999999999999999999999999999999999999999999999999998765432
Q ss_pred ----CceEEEEEEEEeccCCccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHhc------CCCCCCCCCchhhHhhhhh
Q 001820 614 ----GTMYRGCMHLVDLAGSERVNKSEVTGDRLKEAQHINRSLSALGDVIASLAQ------KNPHVPYRNSKLTQLLQDS 683 (1009)
Q Consensus 614 ----~~~~~s~L~LVDLAGSER~~~s~~~G~rlkEa~~INkSLsaLg~VI~ALa~------k~~hIPYRdSKLT~LLqds 683 (1009)
+....|+|+|||||||||..++++.|++++|+.+||+||++|++||.+|++ +..|||||+||||+||||+
T Consensus 232 ~~~~~~~~~s~l~~VDLAGsEr~~~~~~~g~~~~E~~~IN~SL~aL~~vi~aL~~~~~~~~~~~~iPyR~SkLT~lL~~~ 311 (345)
T cd01368 232 DQDKDQITVSQLSLVDLAGSERTSRTQNTGERLKEAGNINTSLMTLGKCIEVLRENQLSGSTNKMVPYRDSKLTHLFQNY 311 (345)
T ss_pred ccCCCceEEEEEEEEecccccccccccccchhhhhhhhhhHHHHHHHHHHHHHHhhhcccCCCCcCCCcCCHHHHHHHHh
Confidence 456789999999999999999999999999999999999999999999986 5789999999999999999
Q ss_pred cCCCceeeEEEecCCCCCcHHHHHHHHHHHHHhh
Q 001820 684 LGGQAKTLMFVHISPEPDAVGETISTLKFAERVA 717 (1009)
Q Consensus 684 LGGnskT~mI~~ISP~~~~~~ETlsTLrFA~Rak 717 (1009)
|||||+|+||+||||...+++||++||+||.+|+
T Consensus 312 l~g~s~t~~I~~vsp~~~~~~eTl~tL~fa~~a~ 345 (345)
T cd01368 312 FDGEGKARMIVNVNPCASDYDETLHVMKFSAIAQ 345 (345)
T ss_pred cCCCCeEEEEEEeCCchhhHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999874
No 10
>KOG0242 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=2.9e-77 Score=714.50 Aligned_cols=355 Identities=41% Similarity=0.618 Sum_probs=308.3
Q ss_pred CCeEEEEEeCCCCCCCCCC-Ccc-eEeecCCeEEEeCCCC--CCCCceeEEeceeeCCCCChHhHHhh-hHHHHHHHhcC
Q 001820 393 GSIRVYCRVRPFLSGQSNY-LST-VDHIEEGNITINTPSK--HGKGWKSFSFNKVYGPSATQAEVFSD-MQPLIRSVLDG 467 (1009)
Q Consensus 393 GnIrV~~RVRP~~~~E~~~-~~~-v~~~~~~~i~v~~p~~--~gk~~k~F~FD~VF~~~atQeeVF~~-v~pLV~svLdG 467 (1009)
.+|.|+|||||+.+.+... ..+ ....++..+....... .......|.||+||+++++|++||+. ++|+|++|++|
T Consensus 6 ~~i~V~vrvRP~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~y~FD~VF~~~~t~~~VYe~~tkpiv~~~l~G 85 (675)
T KOG0242|consen 6 EKILVSVRVRPLNEREDARGDRSDWHCINDTTLFKRVTKSLPEKSKPEKYEFDRVFGEESTQEDVYERTTKPLLLSVLEG 85 (675)
T ss_pred ceeEEEEEeCCCCccccccCCccceEecCCceeEeeccccccccccccceeeeeecCCCCCHHHHHHhccHHHHHHHhcC
Confidence 5899999999998874321 122 2333444444332111 11125889999999999999999998 79999999999
Q ss_pred CceeEEeecccCCCCceeecCCCCCCccccchhhHHHHHHHHHHHHhccceeEEEEEEEEEEecceeeecccCCCCCccc
Q 001820 468 YNVCIFAYGQTGSGKTYTMTGPRELTEKSQGVNYRALSDLFLIAEQRKDIFRYDVAVQMLEIYNEQVRDLLVTDGSNRRL 547 (1009)
Q Consensus 468 ~N~~IfAYGqTGSGKTyTM~G~~~~~~~~~GIipRal~dLF~~~~~~~~~~~y~V~vS~lEIYnE~V~DLL~~~~~~~~L 547 (1009)
||++|||||||||||||||.| ++.+|||+|+|+.+||..+.... ...|.|.|||+|||||.|+|||++++. .+
T Consensus 86 ~N~TVFAYG~TgSGKTyTM~G----~~~~PGii~la~~dif~~I~~~~-~r~f~v~vSYlEIYNE~I~DLL~~~~~--~L 158 (675)
T KOG0242|consen 86 FNATVFAYGQTGSGKTYTMSG----SEDDPGIIPLAMKDIFEKIDKSG-EREFSVRVSYLEIYNERIRDLLNPDGG--DL 158 (675)
T ss_pred cccceeeecCCCCCCceEEec----cCCCCCeeehHHHHHHHHHHhcC-CceeEEEEEEEEEeccccccccCCCCC--Cc
Confidence 999999999999999999999 56689999999999999998876 679999999999999999999987753 49
Q ss_pred ccccCCCCCccCCCCeEEEeCCHHHHHHHHHhhhcccccccccccCCCCCCceEEEEEEeeeecCCCceEEEEEEEEecc
Q 001820 548 EIRNSSQTGLNVPDASLIPVSSTADVINLMNLGQKNRAVGATALNDRSSRSHSCLTVHVQGKDLTSGTMYRGCMHLVDLA 627 (1009)
Q Consensus 548 ~Ire~~~~g~~V~glt~v~V~S~eev~~lL~~G~~nR~vasT~~N~~SSRSH~IftI~V~~~~~~~~~~~~s~L~LVDLA 627 (1009)
.|++|+.+|++|+||+++.|.|.++++.+|..|.++|+++.|.+|..|||||+||+|.|......... ..++|+|||||
T Consensus 159 ~irED~~~gi~V~gL~e~~v~s~e~~~~ll~~g~~~R~~g~T~~N~~SSRSHaIl~i~i~s~~~~~~~-~~s~L~lIDLA 237 (675)
T KOG0242|consen 159 RLREDSEGGIVVPGLTEETVSSREELLELLQKGNKNRTTGETNLNEQSSRSHAILRITVESRGREASS-RVSKLNLIDLA 237 (675)
T ss_pred eEeEcCCCCEEecCCeeecCCCHHHHHHHHHHhhccCcccccccccccchhhheeeEEEEeccccccc-hhheehhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999987654443 67899999999
Q ss_pred CCccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHhcC--CCCCCCCCchhhHhhhhhcCCCceeeEEEecCCCCCcHHH
Q 001820 628 GSERVNKSEVTGDRLKEAQHINRSLSALGDVIASLAQK--NPHVPYRNSKLTQLLQDSLGGQAKTLMFVHISPEPDAVGE 705 (1009)
Q Consensus 628 GSER~~~s~~~G~rlkEa~~INkSLsaLg~VI~ALa~k--~~hIPYRdSKLT~LLqdsLGGnskT~mI~~ISP~~~~~~E 705 (1009)
||||+.++++.|.|++||.+||+||.+||+||.+|+++ ..||||||||||||||++|||||+|+|||||+|+..+|+|
T Consensus 238 GSERas~T~~~G~RlkEG~~INrSLlaLgtVI~~Ls~~~~~~hipYRDSKLTRiLq~sLgGn~rt~~I~tisp~~~~~~e 317 (675)
T KOG0242|consen 238 GSERASRTGNEGVRLKEGAHINRSLLALGTVINKLSEGKRPRHIPYRDSKLTRLLQDSLGGNARTAIIATISPSSSHYEE 317 (675)
T ss_pred hhhhhhhhhccceeccccchhhHHHHHHHHHHHHHccccccCCCCccccHHHHhchhhcCCCccEEEEEEeCchhhHHHH
Confidence 99999999999999999999999999999999999876 5699999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhccccCcccc--cCChHHHHHHHHHHHHHHHHHHhhhcCcc
Q 001820 706 TISTLKFAERVATVELGAARV--NKDSSDVKELKEQIASLKAALARKEGESE 755 (1009)
Q Consensus 706 TlsTLrFA~Rak~I~~~~~~v--n~~~~~i~~L~eeI~~Lk~~L~~~~~e~e 755 (1009)
|.+||+||+|++.|++.+... ..+...+..++.+|..|+.++..+....+
T Consensus 318 T~nTL~fAsrak~i~~~~~~n~~~~~~~~~~~~~~~i~~l~~e~~~~~~~~~ 369 (675)
T KOG0242|consen 318 TKNTLKFASRAKEITTKAQVNVILSDKALLKYLQREIAELEAELERLKKKLE 369 (675)
T ss_pred HHHHHHHHHHhhhcccccccceecchhhhhHHHHHHHHHHHHHHHhhccccc
Confidence 999999999999998764332 23444566667889999998887554444
No 11
>cd01365 KISc_KIF1A_KIF1B Kinesin motor domain, KIF1_like proteins. KIF1A (Unc104) transports synaptic vesicles to the nerve terminal, KIF1B has been implicated in transport of mitochondria. Both proteins are expressed in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. In contrast to the majority of dimeric kinesins, most KIF1A/Unc104 kinesins are monomeric motors. A lysine-rich loop in KIF1A binds to the negatively charged C-terminus of tubulin and compensates for the lack of a second motor domain, allowing KIF1A to move processively.
Probab=100.00 E-value=8e-75 Score=654.58 Aligned_cols=327 Identities=42% Similarity=0.645 Sum_probs=297.7
Q ss_pred CCeEEEEEeCCCCCCCCC-CCcceEeecCCeEEEeCCCCC---CCCceeEEeceeeCCC-------CChHhHHhhh-HHH
Q 001820 393 GSIRVYCRVRPFLSGQSN-YLSTVDHIEEGNITINTPSKH---GKGWKSFSFNKVYGPS-------ATQAEVFSDM-QPL 460 (1009)
Q Consensus 393 GnIrV~~RVRP~~~~E~~-~~~~v~~~~~~~i~v~~p~~~---gk~~k~F~FD~VF~~~-------atQeeVF~~v-~pL 460 (1009)
++|+|||||||+...|.. ....++.+.+..+++.+|... ....+.|.||+||++. ++|++||+.+ .|+
T Consensus 1 ~~i~V~vRvRP~~~~E~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~~f~FD~vf~~~~~~~~~~~tq~~vf~~~~~p~ 80 (356)
T cd01365 1 ANVKVAVRVRPFNSREKNRGSKCIVQMPGKVTTLKNPKAADATRKKPKSFSFDHSYWSHDSEDPHYASQEDVFEDLGREL 80 (356)
T ss_pred CCEEEEEEeCcCChhhhccCCceEEEECCCEEEEEcCCcccccccCceEEECCeEecccCCCCCCCCCHHHHHHHHHHHH
Confidence 589999999999987654 234566777789999887642 2256899999999999 9999999985 899
Q ss_pred HHHHhcCCceeEEeecccCCCCceeecCCCCCCccccchhhHHHHHHHHHHHHhcc-ceeEEEEEEEEEEecceeeeccc
Q 001820 461 IRSVLDGYNVCIFAYGQTGSGKTYTMTGPRELTEKSQGVNYRALSDLFLIAEQRKD-IFRYDVAVQMLEIYNEQVRDLLV 539 (1009)
Q Consensus 461 V~svLdG~N~~IfAYGqTGSGKTyTM~G~~~~~~~~~GIipRal~dLF~~~~~~~~-~~~y~V~vS~lEIYnE~V~DLL~ 539 (1009)
|+++++|||+||||||||||||||||+|+. .++||+||++++||..+..... ...|.|++||+|||||+|+|||+
T Consensus 81 v~~~l~G~n~~i~ayGqtGSGKT~Tm~G~~----~~~Gli~r~~~~Lf~~~~~~~~~~~~~~v~~S~~EIy~e~v~DLL~ 156 (356)
T cd01365 81 LDHAFEGYNVCLFAYGQTGSGKSYTMMGYK----EEKGIIPRLCEELFQRIESKKEQNLSYEVEVSYMEIYNEKVRDLLN 156 (356)
T ss_pred HHHHhCCCceEEEEecCCCCCCeEEecCCC----CCCchHHHHHHHHHHHHhhccccCceEEEEEEEEEEECCeeeeCCC
Confidence 999999999999999999999999999954 4789999999999998877654 67899999999999999999998
Q ss_pred CCC-CCcccccccCCCCCccCCCCeEEEeCCHHHHHHHHHhhhcccccccccccCCCCCCceEEEEEEeeeecC----CC
Q 001820 540 TDG-SNRRLEIRNSSQTGLNVPDASLIPVSSTADVINLMNLGQKNRAVGATALNDRSSRSHSCLTVHVQGKDLT----SG 614 (1009)
Q Consensus 540 ~~~-~~~~L~Ire~~~~g~~V~glt~v~V~S~eev~~lL~~G~~nR~vasT~~N~~SSRSH~IftI~V~~~~~~----~~ 614 (1009)
+.. ....+.+++++..|++|+|++++.|.|++|++.+|..|.++|.+++|.+|..|||||+||+|+|.+.... ..
T Consensus 157 ~~~~~~~~l~i~~~~~~g~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~i~~l~v~~~~~~~~~~~~ 236 (356)
T cd01365 157 PKKKNKGNLKVREHPVLGPYVEDLSKVAVTSYEDIQNLLEEGNKSRTTASTNMNDTSSRSHAVFTIVLTQKKLDKETDLT 236 (356)
T ss_pred CCccCCcCceEEECCCCCEEeCCCEEEEeCCHHHHHHHHHHHHhcccccCCCCCCCcCCceEEEEEEEEEEecccCCCCC
Confidence 764 4567899999999999999999999999999999999999999999999999999999999999887654 34
Q ss_pred ceEEEEEEEEeccCCccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHhcC--------CCCCCCCCchhhHhhhhhcCC
Q 001820 615 TMYRGCMHLVDLAGSERVNKSEVTGDRLKEAQHINRSLSALGDVIASLAQK--------NPHVPYRNSKLTQLLQDSLGG 686 (1009)
Q Consensus 615 ~~~~s~L~LVDLAGSER~~~s~~~G~rlkEa~~INkSLsaLg~VI~ALa~k--------~~hIPYRdSKLT~LLqdsLGG 686 (1009)
....|+|+|||||||||...++..|++++|+.+||+||++|++||.+|+.. +.|||||+||||+||||+|||
T Consensus 237 ~~~~s~l~~VDLAGsEr~~~~~~~~~~~~E~~~IN~SL~aL~~vi~~l~~~~~~~~~~~~~~ipyR~SkLT~lL~~~lgg 316 (356)
T cd01365 237 TEKVSKISLVDLAGSERASSTGAEGDRLKEGSNINKSLTTLGKVISALADNSSAKSKKKSSFIPYRDSVLTWLLKENLGG 316 (356)
T ss_pred ceEEEEEEeeecccccccccccccchhhHHHHHHhHHHHHHHHHHHHHHhcccccccCCCCcCCCcCcHHHHHHHHhcCC
Confidence 578899999999999999999999999999999999999999999999863 589999999999999999999
Q ss_pred CceeeEEEecCCCCCcHHHHHHHHHHHHHhhccccCc
Q 001820 687 QAKTLMFVHISPEPDAVGETISTLKFAERVATVELGA 723 (1009)
Q Consensus 687 nskT~mI~~ISP~~~~~~ETlsTLrFA~Rak~I~~~~ 723 (1009)
|++|+||+||||...+++||++||+||+|+++|++.+
T Consensus 317 ~s~t~~I~~vsp~~~~~~eTl~tL~fa~~~~~i~~~~ 353 (356)
T cd01365 317 NSKTAMIATISPADINYEETLSTLRYADRAKKIVNVA 353 (356)
T ss_pred CceEEEEEEeCCCcccHHHHHHHHHHHHHHhhccCcc
Confidence 9999999999999999999999999999999998764
No 12
>KOG0241 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=7e-76 Score=678.03 Aligned_cols=356 Identities=39% Similarity=0.630 Sum_probs=320.4
Q ss_pred CCCeEEEEEeCCCCCCCCCC-CcceEeecCCeEEEeCCC-CC----CCCceeEEeceeeCCC-------CChHhHHhhh-
Q 001820 392 KGSIRVYCRVRPFLSGQSNY-LSTVDHIEEGNITINTPS-KH----GKGWKSFSFNKVYGPS-------ATQAEVFSDM- 457 (1009)
Q Consensus 392 kGnIrV~~RVRP~~~~E~~~-~~~v~~~~~~~i~v~~p~-~~----gk~~k~F~FD~VF~~~-------atQeeVF~~v- 457 (1009)
..+|||.|||||++.+|... ..++..++....++..|+ +. .++.++|.||++|++. +.|+.||+.+
T Consensus 3 ~~kVkVaVRVRP~nrREl~l~tk~vv~vd~~q~vl~~~pp~~~~~~~k~pktFAFDhcF~s~dpes~n~agQE~Vf~~lG 82 (1714)
T KOG0241|consen 3 DAKVKVAVRVRPMNRRELELSTKCVVEVDKNQTVLHPPPPNHKIGESKGPKTFAFDHCFWSMDPESKNYAGQETVFKCLG 82 (1714)
T ss_pred CcceEEEEEecccchhhhcccccceEEeccCceeecCCCccccccccCCCceeecccccccCCccccccccchhHHHhcc
Confidence 35899999999999998773 457888888777776653 22 2468999999999863 6899999997
Q ss_pred HHHHHHHhcCCceeEEeecccCCCCceeecCCCCCCccccchhhHHHHHHHHHHHHh-ccceeEEEEEEEEEEecceeee
Q 001820 458 QPLIRSVLDGYNVCIFAYGQTGSGKTYTMTGPRELTEKSQGVNYRALSDLFLIAEQR-KDIFRYDVAVQMLEIYNEQVRD 536 (1009)
Q Consensus 458 ~pLV~svLdG~N~~IfAYGqTGSGKTyTM~G~~~~~~~~~GIipRal~dLF~~~~~~-~~~~~y~V~vS~lEIYnE~V~D 536 (1009)
.-+|+++|+|||+||||||||||||||||+| +.+.+|||||.+..||..+... .....|.|.|||+|||||++||
T Consensus 83 ~~il~naf~GyNaCifaYGQtGsGKsYsmmG----t~~QpGiIPrlc~~lFe~I~k~~n~~~tfkVeVSymEIynEkv~D 158 (1714)
T KOG0241|consen 83 EGILENAFQGYNACIFAYGQTGSGKSYSMMG----TAEQPGIIPRLCESLFERIDKESNPSQTFKVEVSYMEIYNEKVRD 158 (1714)
T ss_pred hHHHHHHhhccceeeEEecccCCCceeEeec----cCCCCCchhHHHHHHHHHHHhccCCCceEEEEEEHHHHhhcchhh
Confidence 6789999999999999999999999999999 5678999999999999988654 4567899999999999999999
Q ss_pred cccCCCCCcccccccCCCCCccCCCCeEEEeCCHHHHHHHHHhhhcccccccccccCCCCCCceEEEEEEeeeecC--CC
Q 001820 537 LLVTDGSNRRLEIRNSSQTGLNVPDASLIPVSSTADVINLMNLGQKNRAVGATALNDRSSRSHSCLTVHVQGKDLT--SG 614 (1009)
Q Consensus 537 LL~~~~~~~~L~Ire~~~~g~~V~glt~v~V~S~eev~~lL~~G~~nR~vasT~~N~~SSRSH~IftI~V~~~~~~--~~ 614 (1009)
||.|.++.+.|+++++.-.|.+|.||+...|.|++|+..+|..|+++|++++|+||..|||||+||.|.|.+.-.+ ++
T Consensus 159 LLdPk~ssqtlkVrehsvlGp~vdGLS~laV~S~qdId~lm~egnKsrtvaatnmn~EssrsHaVFslvvtQ~l~D~ktg 238 (1714)
T KOG0241|consen 159 LLDPKGSSQTLKVREHSVLGPYVDGLSQLAVTSFQDIDSLMSEGNKSRTVAATNMNEESSRSHAVFSLVVTQTLYDLKTG 238 (1714)
T ss_pred hhCCCCCcceeEEeecccccccccchhhhhcccHHHHHHHHHhccccceeeeecccccccccceeEEEEEeeEEeccccC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999876332 22
Q ss_pred --ceEEEEEEEEeccCCccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHhc------CCCCCCCCCchhhHhhhhhcCC
Q 001820 615 --TMYRGCMHLVDLAGSERVNKSEVTGDRLKEAQHINRSLSALGDVIASLAQ------KNPHVPYRNSKLTQLLQDSLGG 686 (1009)
Q Consensus 615 --~~~~s~L~LVDLAGSER~~~s~~~G~rlkEa~~INkSLsaLg~VI~ALa~------k~~hIPYRdSKLT~LLqdsLGG 686 (1009)
....++|.|||||||||..++++.|+|++|+.+||+||++||.||+||+. ++++||||||.||+||||+|||
T Consensus 239 ~SgeKvsklslVDLAgserasktga~g~rlkegsNinkSLttLglVIsaLadq~n~kgkdKfvPYrDSVLTwLLkD~LGG 318 (1714)
T KOG0241|consen 239 HSGEKVSKLSLVDLAGSERASKTGAAGSRLKEGSNINKSLTTLGLVISALADQKNGKGKDKFVPYRDSVLTWLLKDNLGG 318 (1714)
T ss_pred cchhheeeeeEEEeccccccccccchhhhhhhcCCcchhhHHHHHHHHHHHHhhcCCCccccccchhHHHHHHHHhhcCC
Confidence 23568999999999999999999999999999999999999999999985 3469999999999999999999
Q ss_pred CceeeEEEecCCCCCcHHHHHHHHHHHHHhhccccCcccccCChH--HHHHHHHHHHHHHHHHHhhhc
Q 001820 687 QAKTLMFVHISPEPDAVGETISTLKFAERVATVELGAARVNKDSS--DVKELKEQIASLKAALARKEG 752 (1009)
Q Consensus 687 nskT~mI~~ISP~~~~~~ETlsTLrFA~Rak~I~~~~~~vn~~~~--~i~~L~eeI~~Lk~~L~~~~~ 752 (1009)
||+|+||+||||++.+|+|||+|||||+||++|.+. +.+|.++. -+++|++|++.|+..|..++.
T Consensus 319 NsrTvMiatvSPaAdnyeeTlStLRYadrAkrIvN~-avvNedpnarvirElReEve~lr~qL~~ae~ 385 (1714)
T KOG0241|consen 319 NSRTVMIATVSPAADNYEETLSTLRYADRAKRIVNH-AVVNEDPNARVIRELREEVEKLREQLEQAEA 385 (1714)
T ss_pred CceeEEEEEecccccchHHHHHHHHHHHHHHHhhcc-ccccCCchHHHHHHHHHHHHHHHHHHhhhhh
Confidence 999999999999999999999999999999999864 67888765 489999999999998887543
No 13
>cd01367 KISc_KIF2_like Kinesin motor domain, KIF2-like group. KIF2 is a protein expressed in neurons, which has been associated with axonal transport and neuron development; alternative splice forms have been implicated in lysosomal translocation. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found in the middle (M-type) of the protein chain. M-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second (KIF2 may be slower). To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and lo
Probab=100.00 E-value=2e-74 Score=643.26 Aligned_cols=313 Identities=36% Similarity=0.554 Sum_probs=283.2
Q ss_pred CCeEEEEEeCCCCCCCCCC-CcceEeecC-CeEEEeCCCCC--C-C--CceeEEeceeeCCCCChHhHHhh-hHHHHHHH
Q 001820 393 GSIRVYCRVRPFLSGQSNY-LSTVDHIEE-GNITINTPSKH--G-K--GWKSFSFNKVYGPSATQAEVFSD-MQPLIRSV 464 (1009)
Q Consensus 393 GnIrV~~RVRP~~~~E~~~-~~~v~~~~~-~~i~v~~p~~~--g-k--~~k~F~FD~VF~~~atQeeVF~~-v~pLV~sv 464 (1009)
.+|+|||||||+.+.|... ...+..+.+ +++++..|... + + ..+.|.||+||+++++|++||+. +.|+|+++
T Consensus 1 ~~i~V~vRvRP~~~~e~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~f~FD~vf~~~~~q~~vf~~~~~plv~~~ 80 (322)
T cd01367 1 MKITVAVRKRPLNDKELSKGETDVVSCESNPTVTVHEPKTKVDLTKYIEKHTFRFDYVFDEAVTNEEVYRSTVKPLIPHV 80 (322)
T ss_pred CCeEEEEEcCcCChhhhccCCceEEEECCCCEEEEecCccccccccccCCceEecceEECCCCCHHHHHHHHHHHHHHHH
Confidence 4899999999999887542 233444444 47888765321 1 1 25789999999999999999998 59999999
Q ss_pred hcCCceeEEeecccCCCCceeecCCCCCCccccchhhHHHHHHHHHHHHhccceeEEEEEEEEEEecceeeecccCCCCC
Q 001820 465 LDGYNVCIFAYGQTGSGKTYTMTGPRELTEKSQGVNYRALSDLFLIAEQRKDIFRYDVAVQMLEIYNEQVRDLLVTDGSN 544 (1009)
Q Consensus 465 LdG~N~~IfAYGqTGSGKTyTM~G~~~~~~~~~GIipRal~dLF~~~~~~~~~~~y~V~vS~lEIYnE~V~DLL~~~~~~ 544 (1009)
++|||+||||||||||||||||+|+. .++||+||++++||..++... ..|.|++||+|||||+|+|||++ .
T Consensus 81 ~~G~n~~i~ayGqtGSGKTyTm~G~~----~~~Glipr~~~~lf~~~~~~~--~~~~v~~S~~EIy~e~v~DLL~~---~ 151 (322)
T cd01367 81 FEGGVATCFAYGQTGSGKTYTMLGDE----NQEGLYALAARDIFRLLAQPN--DDLGVTVSFFEIYGGKLFDLLND---R 151 (322)
T ss_pred hCCCceEEEeccCCCCCCceEecCcC----CcCccHHHHHHHHHHHHhccc--cccEEEEEEEeeecCchhhhccC---c
Confidence 99999999999999999999999954 578999999999999987655 57999999999999999999976 4
Q ss_pred cccccccCCCCCccCCCCeEEEeCCHHHHHHHHHhhhcccccccccccCCCCCCceEEEEEEeeeecCCCceEEEEEEEE
Q 001820 545 RRLEIRNSSQTGLNVPDASLIPVSSTADVINLMNLGQKNRAVGATALNDRSSRSHSCLTVHVQGKDLTSGTMYRGCMHLV 624 (1009)
Q Consensus 545 ~~L~Ire~~~~g~~V~glt~v~V~S~eev~~lL~~G~~nR~vasT~~N~~SSRSH~IftI~V~~~~~~~~~~~~s~L~LV 624 (1009)
+.+.+++++.++++|.|++++.|.|++|++++|..|.++|.+++|.+|..|||||+||+|+|.+.+. ....|+|+||
T Consensus 152 ~~l~i~~~~~~~~~v~~l~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~i~~i~v~~~~~---~~~~s~l~~v 228 (322)
T cd01367 152 KRLSVLEDGKGNVQIVGLTEKPVTSVDELLELIESGNSLRTTGSTGANDQSSRSHAILQIILKNKKL---NKLLGKLSFI 228 (322)
T ss_pred cceeEEEcCCCCEEeCCCEEEEeCCHHHHHHHHHHHhcccccccCcCCCCcccceEEEEEEEEEecC---CeeEEEEEEe
Confidence 6799999999999999999999999999999999999999999999999999999999999988764 5678999999
Q ss_pred eccCCccccCCc-chhhhHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCchhhHhhhhhcCCCceeeEEEecCCCCCcH
Q 001820 625 DLAGSERVNKSE-VTGDRLKEAQHINRSLSALGDVIASLAQKNPHVPYRNSKLTQLLQDSLGGQAKTLMFVHISPEPDAV 703 (1009)
Q Consensus 625 DLAGSER~~~s~-~~G~rlkEa~~INkSLsaLg~VI~ALa~k~~hIPYRdSKLT~LLqdsLGGnskT~mI~~ISP~~~~~ 703 (1009)
|||||||...+. ..+++++|+.+||+||++|++||.+|++++.||||||||||+||||+|||||+|+||+||||...++
T Consensus 229 DLAGsE~~~~~~~~~~~~~~e~~~IN~SL~~L~~vi~al~~~~~~iPyRdSkLT~lL~~~L~g~~~t~~I~~vsp~~~~~ 308 (322)
T cd01367 229 DLAGSERGADTSEHDRQTRKEGAEINKSLLALKECIRALASNKAHVPFRGSKLTQVLRDSFIGNSKTVMIATISPSASSC 308 (322)
T ss_pred ecCCccccccccccchhhHHhHhHHhHHHHHHHHHHHHHhcCCCcCCCccCHHHHHHHHhhCCCCeEEEEEEeCCchhhH
Confidence 999999988765 5789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhh
Q 001820 704 GETISTLKFAERVA 717 (1009)
Q Consensus 704 ~ETlsTLrFA~Rak 717 (1009)
+||++||+||+|++
T Consensus 309 ~eTl~tL~fa~r~k 322 (322)
T cd01367 309 EHTLNTLRYADRVK 322 (322)
T ss_pred HHHHHHHHHHHhhC
Confidence 99999999999985
No 14
>cd01376 KISc_KID_like Kinesin motor domain, KIF22/Kid-like subgroup. Members of this group might play a role in regulating chromosomal movement along microtubules in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through
Probab=100.00 E-value=7.2e-74 Score=638.03 Aligned_cols=313 Identities=39% Similarity=0.603 Sum_probs=286.4
Q ss_pred CeEEEEEeCCCCCCCCCCCcceEeecC-----CeEEEeCCCCCCCCceeEEeceeeCCCCChHhHHhh-hHHHHHHHhcC
Q 001820 394 SIRVYCRVRPFLSGQSNYLSTVDHIEE-----GNITINTPSKHGKGWKSFSFNKVYGPSATQAEVFSD-MQPLIRSVLDG 467 (1009)
Q Consensus 394 nIrV~~RVRP~~~~E~~~~~~v~~~~~-----~~i~v~~p~~~gk~~k~F~FD~VF~~~atQeeVF~~-v~pLV~svLdG 467 (1009)
+|+|||||||+.+.|.....++...++ ..+.+.+|.. ....+.|.||+||+++++|++||+. +.|+|+++++|
T Consensus 1 ~i~V~vRvRP~~~~e~~~~~~v~~~~~~~~~~~~v~~~~~~~-~~~~~~f~FD~vf~~~~~q~~vy~~~~~plv~~~~~G 79 (319)
T cd01376 1 NVRVVVRVRPFLDCEEDSSSCVRGIDSDQGQAKSVEIENPRN-RGETKKYQFDAFYGTECTQEDIFSREVKPIVPHLLSG 79 (319)
T ss_pred CcEEEEEeCcCCccccCCCceEEEeCCCCCcceEEEEeCCCC-CCCccEEecCeEECCCCCHHHHHHHHHHHHHHHHhCC
Confidence 699999999999888665555555444 4677777643 2356899999999999999999998 69999999999
Q ss_pred CceeEEeecccCCCCceeecCCCCCCccccchhhHHHHHHHHHHHHhccceeEEEEEEEEEEecceeeecccCCCCCccc
Q 001820 468 YNVCIFAYGQTGSGKTYTMTGPRELTEKSQGVNYRALSDLFLIAEQRKDIFRYDVAVQMLEIYNEQVRDLLVTDGSNRRL 547 (1009)
Q Consensus 468 ~N~~IfAYGqTGSGKTyTM~G~~~~~~~~~GIipRal~dLF~~~~~~~~~~~y~V~vS~lEIYnE~V~DLL~~~~~~~~L 547 (1009)
||+||||||||||||||||+|+. .++||+||++++||..++... +.|.|++||+|||||+|+|||++. ...+
T Consensus 80 ~n~~i~ayG~tgSGKTyTm~G~~----~~~Glipr~~~~Lf~~~~~~~--~~~~v~~S~~EIy~e~v~DLL~~~--~~~l 151 (319)
T cd01376 80 QNATVFAYGSTGAGKTHTMLGDP----NEPGLIPRTLSDLLRMGRKQA--WTGAFSMSYYEIYNEKVYDLLEPA--KKEL 151 (319)
T ss_pred CceEEEEECCCCCCCcEEEeCCc----CccchHHHHHHHHHHHHhhcc--ccceEEEEEEEEECCEeeEccCCC--CCCc
Confidence 99999999999999999999954 478999999999999876543 679999999999999999999765 4568
Q ss_pred ccccCCCCCccCCCCeEEEeCCHHHHHHHHHhhhcccccccccccCCCCCCceEEEEEEeeeecCCCceEEEEEEEEecc
Q 001820 548 EIRNSSQTGLNVPDASLIPVSSTADVINLMNLGQKNRAVGATALNDRSSRSHSCLTVHVQGKDLTSGTMYRGCMHLVDLA 627 (1009)
Q Consensus 548 ~Ire~~~~g~~V~glt~v~V~S~eev~~lL~~G~~nR~vasT~~N~~SSRSH~IftI~V~~~~~~~~~~~~s~L~LVDLA 627 (1009)
.|++++.++++|.|+++++|.+++|+..++..|.++|.+++|.+|..|||||+||+|+|.+.+. .....|+|+|||||
T Consensus 152 ~i~~~~~~~~~v~gl~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~SSRSH~i~~i~v~~~~~--~~~~~s~l~~VDLA 229 (319)
T cd01376 152 PIREDKDGNILIVGLTSKPIKSMAEFEEAYIPASKNRTVAATKLNDNSSRSHAVLRIKVTQPAS--NIQLEGKLNLIDLA 229 (319)
T ss_pred eEEEcCCCCEEeeCCEEEEeCCHHHHHHHHHHHHhhhccccCcCCCccCCCeEEEEEEEEEECC--CceEEEEEEEEECC
Confidence 9999999999999999999999999999999999999999999999999999999999988753 34678999999999
Q ss_pred CCccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCchhhHhhhhhcCCCceeeEEEecCCCCCcHHHHH
Q 001820 628 GSERVNKSEVTGDRLKEAQHINRSLSALGDVIASLAQKNPHVPYRNSKLTQLLQDSLGGQAKTLMFVHISPEPDAVGETI 707 (1009)
Q Consensus 628 GSER~~~s~~~G~rlkEa~~INkSLsaLg~VI~ALa~k~~hIPYRdSKLT~LLqdsLGGnskT~mI~~ISP~~~~~~ETl 707 (1009)
||||...++..|.+++|+.+||+||++|++||.+|+++..|||||+||||+||+|+|||||+|+||+||||...+++||+
T Consensus 230 GsE~~~~~~~~g~~~~e~~~iN~Sl~~L~~vi~aL~~~~~~ipyr~S~LT~lL~~~L~g~s~t~~i~~vsp~~~~~~eTl 309 (319)
T cd01376 230 GSEDNRRTGNEGIRLKESAAINSSLFVLSKVVDALNKGLPRIPYRESKLTRLLQDSLGGGSRCIMVANIAPERSFYQDTL 309 (319)
T ss_pred CCCcccccCCccchhhhhhhhhhhHHHHHHHHHHHhcCCCcCCCccCHHHHHHHHhcCCCccEEEEEEeCCchhhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhh
Q 001820 708 STLKFAERVA 717 (1009)
Q Consensus 708 sTLrFA~Rak 717 (1009)
+||+||+|++
T Consensus 310 ~TL~fa~r~~ 319 (319)
T cd01376 310 STLNFASRSK 319 (319)
T ss_pred HHHHHHHhhC
Confidence 9999999985
No 15
>cd01364 KISc_BimC_Eg5 Kinesin motor domain, BimC/Eg5 spindle pole proteins, participate in spindle assembly and chromosome segregation during cell division. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil d
Probab=100.00 E-value=3e-73 Score=640.70 Aligned_cols=332 Identities=41% Similarity=0.624 Sum_probs=294.0
Q ss_pred CCeEEEEEeCCCCCCCCCC-CcceEee-cC-CeEEEeCCCCCCCCceeEEeceeeCCCCChHhHHhh-hHHHHHHHhcCC
Q 001820 393 GSIRVYCRVRPFLSGQSNY-LSTVDHI-EE-GNITINTPSKHGKGWKSFSFNKVYGPSATQAEVFSD-MQPLIRSVLDGY 468 (1009)
Q Consensus 393 GnIrV~~RVRP~~~~E~~~-~~~v~~~-~~-~~i~v~~p~~~gk~~k~F~FD~VF~~~atQeeVF~~-v~pLV~svLdG~ 468 (1009)
+||+|+|||||+...|... ...+... ++ .+|.+..+.......+.|.||+||+++++|++||+. +.|+|+++++||
T Consensus 2 ~~i~V~vRvRP~~~~e~~~~~~~~i~~~~~~~~i~~~~~~~~~~~~~~f~Fd~vf~~~~~q~~vy~~~~~plv~~~~~G~ 81 (352)
T cd01364 2 SNIQVVVRCRPRNSRERKEKSSVVVEVSGSSKEIIVSTGGADKQSTKTYTFDKVFGPEADQIEVYSQVVSPILDEVLMGY 81 (352)
T ss_pred CCEEEEEEcCcCCccccccCCCeEEEEcCCCcEEEEcCCCcccccceeEeccccCCCCCCHHHHHHHHHHHHHHHHhCCC
Confidence 5899999999998877543 2233333 33 556665543333367899999999999999999998 599999999999
Q ss_pred ceeEEeecccCCCCceeecCCCCC-------CccccchhhHHHHHHHHHHHHhccceeEEEEEEEEEEecceeeecccCC
Q 001820 469 NVCIFAYGQTGSGKTYTMTGPREL-------TEKSQGVNYRALSDLFLIAEQRKDIFRYDVAVQMLEIYNEQVRDLLVTD 541 (1009)
Q Consensus 469 N~~IfAYGqTGSGKTyTM~G~~~~-------~~~~~GIipRal~dLF~~~~~~~~~~~y~V~vS~lEIYnE~V~DLL~~~ 541 (1009)
|+||||||||||||||||+|+... ....+||+||++++||..++.. ...|.|+|||+|||||+|+|||++.
T Consensus 82 n~~i~ayG~tgSGKTyTl~G~~~~~~~~~~~~~~~~Glipr~~~~Lf~~~~~~--~~~~~v~~S~~EIy~e~v~DLL~~~ 159 (352)
T cd01364 82 NCTIFAYGQTGTGKTYTMEGDRTDNKGSTWELSPHAGIIPRALYQLFEKLESQ--NTEYSVKVSYLELYNEELFDLLSSE 159 (352)
T ss_pred eEEEEECCCCCCCCcEEecCCCcccccccccccccCCchHHHHHHHHHHHHhc--cceeEEEEEEEEeeCCeeeeCCCCc
Confidence 999999999999999999997542 1356899999999999998765 4589999999999999999999876
Q ss_pred C-CCcccccccC--CCCCccCCCCeEEEeCCHHHHHHHHHhhhcccccccccccCCCCCCceEEEEEEeeeecC---CCc
Q 001820 542 G-SNRRLEIRNS--SQTGLNVPDASLIPVSSTADVINLMNLGQKNRAVGATALNDRSSRSHSCLTVHVQGKDLT---SGT 615 (1009)
Q Consensus 542 ~-~~~~L~Ire~--~~~g~~V~glt~v~V~S~eev~~lL~~G~~nR~vasT~~N~~SSRSH~IftI~V~~~~~~---~~~ 615 (1009)
. ..+++.++++ ..+|++|+|++++.|.|++|++++|..|.++|++++|.+|..|||||+||+|+|.+.... ...
T Consensus 160 ~~~~~~l~i~e~~~~~~g~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~sSRSH~i~~i~i~~~~~~~~~~~~ 239 (352)
T cd01364 160 SDLNKPLRIFDDTNNKGGVVIQGLEEITVNNANEGLKLLEKGSAKRKTAATLMNDQSSRSHSIFSITIHIKETTISGEEL 239 (352)
T ss_pred cccCccceEEeccCcCCCEEeCCcEEEEeCCHHHHHHHHHHHhhhcccccCcCCCCCCCCceEEEEEEEEeccCCCCCcc
Confidence 4 4567899999 588999999999999999999999999999999999999999999999999999876543 234
Q ss_pred eEEEEEEEEeccCCccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCchhhHhhhhhcCCCceeeEEEe
Q 001820 616 MYRGCMHLVDLAGSERVNKSEVTGDRLKEAQHINRSLSALGDVIASLAQKNPHVPYRNSKLTQLLQDSLGGQAKTLMFVH 695 (1009)
Q Consensus 616 ~~~s~L~LVDLAGSER~~~s~~~G~rlkEa~~INkSLsaLg~VI~ALa~k~~hIPYRdSKLT~LLqdsLGGnskT~mI~~ 695 (1009)
...|+|+|||||||||..+.++.+.+++|+..||+||++|++||.+|+.++.|||||+||||+||+|+|||||+|+||+|
T Consensus 240 ~~~s~l~~VDLAGsE~~~~~~~~~~~~~e~~~iN~SL~~L~~vi~al~~~~~~vpyR~S~LT~lL~~~Lgg~s~t~~I~~ 319 (352)
T cd01364 240 VKIGKLNLVDLAGSENIGRSGAENKRAREAGNINQSLLTLGRVINALVEKSPHIPYRESKLTRLLQDSLGGRTKTSIIAT 319 (352)
T ss_pred EEEEEEEEEECCCccccccccCcchhhHHHhhhhHHHHHHHHHHHHHHcCCCCCCCcccHHHHHHHHhcCCCceEEEEEE
Confidence 56799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCcHHHHHHHHHHHHHhhccccCccccc
Q 001820 696 ISPEPDAVGETISTLKFAERVATVELGAARVN 727 (1009)
Q Consensus 696 ISP~~~~~~ETlsTLrFA~Rak~I~~~~~~vn 727 (1009)
|||...+++||++||+||+|+++|++.| .+|
T Consensus 320 vsp~~~~~~eTl~TL~~a~~~~~i~n~P-~~n 350 (352)
T cd01364 320 ISPASINLEETLSTLEYAHRAKNIKNKP-EVN 350 (352)
T ss_pred eCCCcccHHHHHHHHHHHHHHhhccCcc-ccC
Confidence 9999999999999999999999998765 443
No 16
>cd01369 KISc_KHC_KIF5 Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup. Members of this group have been associated with organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-c
Probab=100.00 E-value=2.4e-73 Score=634.91 Aligned_cols=320 Identities=41% Similarity=0.674 Sum_probs=293.4
Q ss_pred CCeEEEEEeCCCCCCCCC--CCcceEeecCCeEEEeCCCCCCCCceeEEeceeeCCCCChHhHHhh-hHHHHHHHhcCCc
Q 001820 393 GSIRVYCRVRPFLSGQSN--YLSTVDHIEEGNITINTPSKHGKGWKSFSFNKVYGPSATQAEVFSD-MQPLIRSVLDGYN 469 (1009)
Q Consensus 393 GnIrV~~RVRP~~~~E~~--~~~~v~~~~~~~i~v~~p~~~gk~~k~F~FD~VF~~~atQeeVF~~-v~pLV~svLdG~N 469 (1009)
.+|+|+|||||+.+.|.. ...++...++.+|++..+. ..+.|.||+||+++++|++||+. +.|+|+++++|||
T Consensus 2 ~~i~V~vRvRP~~~~e~~~~~~~~v~~~~~~~v~~~~~~----~~~~f~FD~vf~~~~~q~~vy~~~~~~~v~~~~~G~n 77 (325)
T cd01369 2 CNIKVVCRFRPLNEKEELRGSKSIVKFPGEDTVSIAGSD----DGKTFSFDRVFPPNTTQEDVYNFVAKPIVDDVLNGYN 77 (325)
T ss_pred CCeEEEEEcCcCChhhhccCCceEEEEcCCCEEEecCCC----CceEEEcCeEECCCCCHHHHHHHHHHHHHHHHHcCcc
Confidence 489999999999887733 2334444455577776542 45799999999999999999998 4999999999999
Q ss_pred eeEEeecccCCCCceeecCCCCCCccccchhhHHHHHHHHHHHHhccceeEEEEEEEEEEecceeeecccCCCCCccccc
Q 001820 470 VCIFAYGQTGSGKTYTMTGPRELTEKSQGVNYRALSDLFLIAEQRKDIFRYDVAVQMLEIYNEQVRDLLVTDGSNRRLEI 549 (1009)
Q Consensus 470 ~~IfAYGqTGSGKTyTM~G~~~~~~~~~GIipRal~dLF~~~~~~~~~~~y~V~vS~lEIYnE~V~DLL~~~~~~~~L~I 549 (1009)
+||||||||||||||||+|+.. ...++||+||++++||..+........|.|++||+|||||+|+|||++. ...+.+
T Consensus 78 ~~i~ayG~tgSGKT~Tm~G~~~-~~~~~Giipr~~~~Lf~~~~~~~~~~~~~v~~S~~EIy~e~v~DLL~~~--~~~l~i 154 (325)
T cd01369 78 GTIFAYGQTGSGKTYTMEGPPG-DPELKGIIPRIVHDIFEHISSMDENLEFHVKVSYLEIYMEKIRDLLDVS--KDNLQV 154 (325)
T ss_pred ceEEEeCCCCCCceEEecCCCC-ccccCChHHHHHHHHHHHHhhccCCceEEEEEEEEEEECCChhhcccCc--cCCceE
Confidence 9999999999999999999754 2447899999999999999887777889999999999999999999765 456889
Q ss_pred ccCCCCCccCCCCeEEEeCCHHHHHHHHHhhhcccccccccccCCCCCCceEEEEEEeeeecCCCceEEEEEEEEeccCC
Q 001820 550 RNSSQTGLNVPDASLIPVSSTADVINLMNLGQKNRAVGATALNDRSSRSHSCLTVHVQGKDLTSGTMYRGCMHLVDLAGS 629 (1009)
Q Consensus 550 re~~~~g~~V~glt~v~V~S~eev~~lL~~G~~nR~vasT~~N~~SSRSH~IftI~V~~~~~~~~~~~~s~L~LVDLAGS 629 (1009)
+++..+|++|+|++++.|.|.+|++.+|..|.++|++++|.+|..|||||+||+|+|.+.+...+....|+|+|||||||
T Consensus 155 ~~~~~~~~~v~gl~~~~v~s~~e~~~~i~~~~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~~~~~~~s~l~~VDLAGs 234 (325)
T cd01369 155 HEDKNRGVYVKGLTERFVSSPEEVLEVINEGKSNRAVASTNMNEESSRSHSIFLITLKQENVETGSKKRGKLFLVDLAGS 234 (325)
T ss_pred EEcCCCCEEEcCCEEEEcCCHHHHHHHHHHHHhhcccccCcCCCccccccEEEEEEEEEEecCCCCEEEEEEEEEECCCC
Confidence 99999999999999999999999999999999999999999999999999999999999888778889999999999999
Q ss_pred ccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHhcCC-CCCCCCCchhhHhhhhhcCCCceeeEEEecCCCCCcHHHHHH
Q 001820 630 ERVNKSEVTGDRLKEAQHINRSLSALGDVIASLAQKN-PHVPYRNSKLTQLLQDSLGGQAKTLMFVHISPEPDAVGETIS 708 (1009)
Q Consensus 630 ER~~~s~~~G~rlkEa~~INkSLsaLg~VI~ALa~k~-~hIPYRdSKLT~LLqdsLGGnskT~mI~~ISP~~~~~~ETls 708 (1009)
||..++++.|.+++|+..||+||++|++||.+|++++ .|||||+||||+||+|+|||+|+|+||+||||...+++||++
T Consensus 235 E~~~~~~~~~~~~~e~~~in~sl~~L~~vi~aL~~~~~~~vpyR~S~LT~lL~~~L~g~s~t~~I~~vsp~~~~~~eTl~ 314 (325)
T cd01369 235 EKVSKTGAEGQTLEEAKKINKSLSALGNVINALTDGKSTHIPYRDSKLTRILQDSLGGNSRTTLIICCSPSSYNESETLS 314 (325)
T ss_pred CcccccCCcchhHHHHHHHhHHHHHHHHHHHHHHcCCCCcCCCccCHHHHHHHHhcCCCCeEEEEEEeCCccccHHHHHH
Confidence 9999999999999999999999999999999999987 999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcc
Q 001820 709 TLKFAERVATV 719 (1009)
Q Consensus 709 TLrFA~Rak~I 719 (1009)
||+||+|+++|
T Consensus 315 TL~~a~r~~~i 325 (325)
T cd01369 315 TLRFGARAKTI 325 (325)
T ss_pred HHHHHHHhhcC
Confidence 99999999876
No 17
>cd01371 KISc_KIF3 Kinesin motor domain, kinesins II or KIF3_like proteins. Subgroup of kinesins, which form heterotrimers composed of 2 kinesins and one non-motor accessory subunit. Kinesins II play important roles in ciliary transport, and have been implicated in neuronal transport, melanosome transport, the secretory pathway, and mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this group the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain
Probab=100.00 E-value=2.6e-73 Score=636.98 Aligned_cols=324 Identities=43% Similarity=0.710 Sum_probs=292.0
Q ss_pred CCeEEEEEeCCCCCCCCCC-CcceEee--cCCeEEEeCCCCCC-CCceeEEeceeeCCCCChHhHHhh-hHHHHHHHhcC
Q 001820 393 GSIRVYCRVRPFLSGQSNY-LSTVDHI--EEGNITINTPSKHG-KGWKSFSFNKVYGPSATQAEVFSD-MQPLIRSVLDG 467 (1009)
Q Consensus 393 GnIrV~~RVRP~~~~E~~~-~~~v~~~--~~~~i~v~~p~~~g-k~~k~F~FD~VF~~~atQeeVF~~-v~pLV~svLdG 467 (1009)
.+|+|+|||||+.+.|... ...+..+ +++.+.+..|.... ...+.|.||+||+++++|++||+. +.|+|+++++|
T Consensus 1 ~~i~V~vRvRP~~~~e~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~f~fd~vf~~~~~q~~vy~~~~~plv~~~~~G 80 (333)
T cd01371 1 ENVKVVVRCRPLNKREKSEGAPEIVGVDENRGQVTVHNPKADAKEPPKVFTFDAVYDPNSTQEDVYNETARPLVDSVLEG 80 (333)
T ss_pred CCeEEEEEcCcCChhhhhcCCCeEEEEcCCCCEEEEeCCcccccCCCceeeeccccCCCccHHHHHHHHHHHHHHHHhCC
Confidence 3899999999999877542 2233333 46778887765322 257899999999999999999998 59999999999
Q ss_pred CceeEEeecccCCCCceeecCCCCCCccccchhhHHHHHHHHHHHHhccceeEEEEEEEEEEecceeeecccCCCCCccc
Q 001820 468 YNVCIFAYGQTGSGKTYTMTGPRELTEKSQGVNYRALSDLFLIAEQRKDIFRYDVAVQMLEIYNEQVRDLLVTDGSNRRL 547 (1009)
Q Consensus 468 ~N~~IfAYGqTGSGKTyTM~G~~~~~~~~~GIipRal~dLF~~~~~~~~~~~y~V~vS~lEIYnE~V~DLL~~~~~~~~L 547 (1009)
||+||||||||||||||||+|+.. ....+||+||++++||..+....+ ..|.|.|||+|||||+|+|||.+.. .+.+
T Consensus 81 ~n~~i~ayG~tgSGKTyTm~G~~~-~~~~~Glipr~~~~Lf~~~~~~~~-~~~~v~~S~~Eiy~e~v~DLL~~~~-~~~l 157 (333)
T cd01371 81 YNGTIFAYGQTGTGKTFTMEGVRE-PPELRGIIPNSFAHIFGHIAKAEN-VQFLVRVSYLEIYNEEVRDLLGKDQ-KKKL 157 (333)
T ss_pred CceeEEecCCCCCCCcEeecCCCC-cccccchHHHHHHHHHHHHhhccC-ccEEEEEEEEEeeCCeeeeCCCCCC-CCce
Confidence 999999999999999999999654 345799999999999999877655 6899999999999999999997653 3578
Q ss_pred ccccCCCCCccCCCCeEEEeCCHHHHHHHHHhhhcccccccccccCCCCCCceEEEEEEeeeecC---CCceEEEEEEEE
Q 001820 548 EIRNSSQTGLNVPDASLIPVSSTADVINLMNLGQKNRAVGATALNDRSSRSHSCLTVHVQGKDLT---SGTMYRGCMHLV 624 (1009)
Q Consensus 548 ~Ire~~~~g~~V~glt~v~V~S~eev~~lL~~G~~nR~vasT~~N~~SSRSH~IftI~V~~~~~~---~~~~~~s~L~LV 624 (1009)
.+++++.++++|.|++++.|.|++|+..+|..|.++|++++|.+|..|||||+||+|+|.+.+.. ......|+|+||
T Consensus 158 ~i~~~~~~~~~v~~l~~~~v~s~~~~~~~l~~g~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~~~~~~~~~~s~L~~V 237 (333)
T cd01371 158 ELKERPDRGVYVKDLSMFVVKNAEEMDKLMTLGNKNRSVGATNMNEDSSRSHSIFTITIECSEKGEDGENHIRVGKLNLV 237 (333)
T ss_pred eEEEcCCCCEEeCCCEEEEeCCHHHHHHHHHHHHhhCccccccccCCCCCCcEEEEEEEEEEeccCCCCCcEEEEEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999987663 345678999999
Q ss_pred eccCCccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHhcCCC-CCCCCCchhhHhhhhhcCCCceeeEEEecCCCCCcH
Q 001820 625 DLAGSERVNKSEVTGDRLKEAQHINRSLSALGDVIASLAQKNP-HVPYRNSKLTQLLQDSLGGQAKTLMFVHISPEPDAV 703 (1009)
Q Consensus 625 DLAGSER~~~s~~~G~rlkEa~~INkSLsaLg~VI~ALa~k~~-hIPYRdSKLT~LLqdsLGGnskT~mI~~ISP~~~~~ 703 (1009)
|||||||..+++..|++++|+..||+||.+|++||.+|+++.. |||||+||||+||+|+|||||+|+||+||+|...++
T Consensus 238 DLAGsEr~~~~~~~~~~~~E~~~iN~sL~~L~~vi~al~~~~~~~ipyR~SkLT~lL~~~l~g~s~t~~I~~vsP~~~~~ 317 (333)
T cd01371 238 DLAGSERQSKTGATGDRLKEATKINLSLSALGNVISALVDGKSTHIPYRDSKLTRLLQDSLGGNSKTVMCANIGPADYNY 317 (333)
T ss_pred ECCCCCcccccCCchhhhHhHhhhhhHHHHHHHHHHHHHhCCCCcCCCccCHHHHHHHHhcCCCceEEEEEEeCCccccH
Confidence 9999999999999999999999999999999999999998775 999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcc
Q 001820 704 GETISTLKFAERVATV 719 (1009)
Q Consensus 704 ~ETlsTLrFA~Rak~I 719 (1009)
+||++||+||+|++.|
T Consensus 318 ~eTl~TL~fa~r~r~I 333 (333)
T cd01371 318 DETLSTLRYANRAKNI 333 (333)
T ss_pred HHHHHHHHHHHHhhcC
Confidence 9999999999999876
No 18
>cd01366 KISc_C_terminal Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins. Ncd is a spindle motor protein necessary for chromosome segregation in meiosis. KIFC2/KIFC3-like kinesins have been implicated in motility of the Golgi apparatus as well as dentritic and axonal transport in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found at the C-terminus (C-type). C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for mi
Probab=100.00 E-value=9.1e-73 Score=631.08 Aligned_cols=324 Identities=55% Similarity=0.882 Sum_probs=296.4
Q ss_pred CCCeEEEEEeCCCCCCCCCCCcceEee-cC--CeEEEeCCCCCCCCceeEEeceeeCCCCChHhHHhhhHHHHHHHhcCC
Q 001820 392 KGSIRVYCRVRPFLSGQSNYLSTVDHI-EE--GNITINTPSKHGKGWKSFSFNKVYGPSATQAEVFSDMQPLIRSVLDGY 468 (1009)
Q Consensus 392 kGnIrV~~RVRP~~~~E~~~~~~v~~~-~~--~~i~v~~p~~~gk~~k~F~FD~VF~~~atQeeVF~~v~pLV~svLdG~ 468 (1009)
+|+|+|||||||+..++......+..+ ++ ..+.+..+ ....+.|.||+||+++++|++||+.+.|+|+++++|+
T Consensus 1 ~~~i~V~vRirP~~~~e~~~~~~~~~~~~~~~~~i~~~~~---~~~~~~f~fD~vf~~~~~q~~v~~~v~p~v~~~~~G~ 77 (329)
T cd01366 1 KGNIRVFCRVRPLLPSESTEYSSVISFPDEDGGTIELSKG---TGKKKSFSFDRVFDPDASQEDVFEEVSPLVQSALDGY 77 (329)
T ss_pred CCCEEEEEEcCcCCccccCCCccEEEEcCCCceEEEEeCC---CCCceEEecCEEECCCCCHHHHHHHHHHHHHHHhCCC
Confidence 699999999999998875433333333 22 45555442 2356899999999999999999999999999999999
Q ss_pred ceeEEeecccCCCCceeecCCCCCCccccchhhHHHHHHHHHHHHhcc-ceeEEEEEEEEEEecceeeecccCCC-CCcc
Q 001820 469 NVCIFAYGQTGSGKTYTMTGPRELTEKSQGVNYRALSDLFLIAEQRKD-IFRYDVAVQMLEIYNEQVRDLLVTDG-SNRR 546 (1009)
Q Consensus 469 N~~IfAYGqTGSGKTyTM~G~~~~~~~~~GIipRal~dLF~~~~~~~~-~~~y~V~vS~lEIYnE~V~DLL~~~~-~~~~ 546 (1009)
|+||||||+|||||||||+|+. .++||+||++++||..++...+ ...|.|.+||+|||||+|+|||.+.. ....
T Consensus 78 ~~~i~ayG~tgSGKT~tl~G~~----~~~Gli~r~~~~lf~~~~~~~~~~~~~~v~~S~~EIy~e~v~DLL~~~~~~~~~ 153 (329)
T cd01366 78 NVCIFAYGQTGSGKTYTMEGPP----ENPGIIPRALEQLFNTAEELKEKGWSYTITASMLEIYNETIRDLLATKPAPKKK 153 (329)
T ss_pred ceEEEEeCCCCCCCcEEecCCC----CCCCcHHHHHHHHHHHHHhhhccCceEEEEEEEEEEECCEeEECCCCCcCCCCc
Confidence 9999999999999999999954 6789999999999999887654 68999999999999999999998753 3567
Q ss_pred cccccCCCCCccCCCCeEEEeCCHHHHHHHHHhhhcccccccccccCCCCCCceEEEEEEeeeecCCCceEEEEEEEEec
Q 001820 547 LEIRNSSQTGLNVPDASLIPVSSTADVINLMNLGQKNRAVGATALNDRSSRSHSCLTVHVQGKDLTSGTMYRGCMHLVDL 626 (1009)
Q Consensus 547 L~Ire~~~~g~~V~glt~v~V~S~eev~~lL~~G~~nR~vasT~~N~~SSRSH~IftI~V~~~~~~~~~~~~s~L~LVDL 626 (1009)
++|++++.+++++.|++++.|.|++|+..+|..|.++|.+++|.+|..|||||+||+|+|.+.+...+....|+|+||||
T Consensus 154 l~i~~~~~~~~~i~~l~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~sSRsH~i~~i~v~~~~~~~~~~~~s~l~~VDL 233 (329)
T cd01366 154 LEIKHDSKGETYVTNLTEVPVSSPEEVTRLLNLGSKNRSVASTNMNEHSSRSHAVFQLKIRGTNLQTGEQTRGKLNLVDL 233 (329)
T ss_pred eEEEECCCCCEEecCCEEEEeCCHHHHHHHHHHHHhhcccccccccCCCCCccEEEEEEEEEEcCCCCcEEEEEEEEEEC
Confidence 99999999999999999999999999999999999999999999999999999999999999887778889999999999
Q ss_pred cCCccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCchhhHhhhhhcCCCceeeEEEecCCCCCcHHHH
Q 001820 627 AGSERVNKSEVTGDRLKEAQHINRSLSALGDVIASLAQKNPHVPYRNSKLTQLLQDSLGGQAKTLMFVHISPEPDAVGET 706 (1009)
Q Consensus 627 AGSER~~~s~~~G~rlkEa~~INkSLsaLg~VI~ALa~k~~hIPYRdSKLT~LLqdsLGGnskT~mI~~ISP~~~~~~ET 706 (1009)
||+|+..+.++.+.+++|+..||+||.+|++||.+|+++..|||||+||||+||+|+|||+++|+||+||||...+++||
T Consensus 234 aGsE~~~~~~~~~~~~~e~~~in~Sl~~L~~vl~~l~~~~~~ipyr~S~LT~lL~~~l~g~~~t~~i~~vsp~~~~~~et 313 (329)
T cd01366 234 AGSERLKKSGATGDRLKEAQAINKSLSALGDVISALRSKDSHVPYRNSKLTYLLQDSLGGNSKTLMFVNISPLESNLSET 313 (329)
T ss_pred CCCcccccccccchhhHhHhhhhhHHHHHHHHHHHHhcCCCcCCCcccHhHHHHHHhcCCCceEEEEEEeCCchhhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhccccC
Q 001820 707 ISTLKFAERVATVELG 722 (1009)
Q Consensus 707 lsTLrFA~Rak~I~~~ 722 (1009)
++||+||+|+++|++|
T Consensus 314 l~tL~~a~~~~~i~~~ 329 (329)
T cd01366 314 LCSLRFASRVRSVELG 329 (329)
T ss_pred HHHHHHHHHhhcccCC
Confidence 9999999999999864
No 19
>cd01374 KISc_CENP_E Kinesin motor domain, CENP-E/KIP2-like subgroup, involved in chromosome movement and/or spindle elongation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to
Probab=100.00 E-value=4.3e-73 Score=632.11 Aligned_cols=314 Identities=40% Similarity=0.648 Sum_probs=287.9
Q ss_pred CeEEEEEeCCCCCCCCCCCcceEeecCC-eEEEeCCCCCCCCceeEEeceeeCCCCChHhHHhh-hHHHHHHHhcCCcee
Q 001820 394 SIRVYCRVRPFLSGQSNYLSTVDHIEEG-NITINTPSKHGKGWKSFSFNKVYGPSATQAEVFSD-MQPLIRSVLDGYNVC 471 (1009)
Q Consensus 394 nIrV~~RVRP~~~~E~~~~~~v~~~~~~-~i~v~~p~~~gk~~k~F~FD~VF~~~atQeeVF~~-v~pLV~svLdG~N~~ 471 (1009)
+|+|+|||||+...|.....++..++++ ++++..| ...+.|.||+||+++++|++||+. +.|+|+++++|||+|
T Consensus 1 ~V~V~vRvRP~~~~e~~~~~~~~~~~~~~~v~~~~~----~~~~~f~fd~vf~~~~~q~~vy~~~~~p~v~~~l~G~n~~ 76 (321)
T cd01374 1 KIKVSVRVRPLNPRESDNEQVAWSIDNDNTISLEES----TPGQSFTFDRVFGGESTNREVYERIAKPVVRSALEGYNGT 76 (321)
T ss_pred CeEEEEEcCcCCcccccCCcceEEECCCCEEEEcCC----CCCeEEecCeEECCCCCHHHHHHHHHHHHHHHHHCCCcee
Confidence 6999999999998876544556666555 6666544 246899999999999999999998 599999999999999
Q ss_pred EEeecccCCCCceeecCCCCCCccccchhhHHHHHHHHHHHHhccceeEEEEEEEEEEecceeeecccCCCCCccccccc
Q 001820 472 IFAYGQTGSGKTYTMTGPRELTEKSQGVNYRALSDLFLIAEQRKDIFRYDVAVQMLEIYNEQVRDLLVTDGSNRRLEIRN 551 (1009)
Q Consensus 472 IfAYGqTGSGKTyTM~G~~~~~~~~~GIipRal~dLF~~~~~~~~~~~y~V~vS~lEIYnE~V~DLL~~~~~~~~L~Ire 551 (1009)
|||||||||||||||+|+. .++||+||++++||..+.... ...|.|++||+|||||+|+|||++.. ..+++++
T Consensus 77 i~ayG~tgSGKT~T~~G~~----~~~Gli~r~~~~lf~~~~~~~-~~~~~v~~S~~Eiy~e~v~DLL~~~~--~~l~i~~ 149 (321)
T cd01374 77 IFAYGQTSSGKTFTMSGDE----QEPGIIPLAVRDIFQRIQDTP-DREFLLRVSYLEIYNEKIKDLLSPSP--QELRIRE 149 (321)
T ss_pred EEeecCCCCCCceeccCCC----CCCchHHHHHHHHHHHHhccc-CceEEEEEEEEEEEcCEeEEccCCCC--CCceEEE
Confidence 9999999999999999953 678999999999999987655 45899999999999999999997764 6789999
Q ss_pred CCCCCccCCCCeEEEeCCHHHHHHHHHhhhcccccccccccCCCCCCceEEEEEEeeeecCC---CceEEEEEEEEeccC
Q 001820 552 SSQTGLNVPDASLIPVSSTADVINLMNLGQKNRAVGATALNDRSSRSHSCLTVHVQGKDLTS---GTMYRGCMHLVDLAG 628 (1009)
Q Consensus 552 ~~~~g~~V~glt~v~V~S~eev~~lL~~G~~nR~vasT~~N~~SSRSH~IftI~V~~~~~~~---~~~~~s~L~LVDLAG 628 (1009)
++.+++++.|++++.|.|++|+..+|..|.++|++++|.+|.+|||||+||+|+|.+..... +....|+|+||||||
T Consensus 150 ~~~~~~~v~gl~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~~~~~~~~~~s~l~~vDLAG 229 (321)
T cd01374 150 DPNKGVVVAGLTEEIVTSPEHLLQLIARGEKNRHVGETDFNERSSRSHTIFQLTIESRERGDSESGTVRVSTLNLIDLAG 229 (321)
T ss_pred CCCCCEEeCCceEEEeCCHHHHHHHHHHHHhccccccCcCCCccccccEEEEEEEEEEecCCCCCCcEEEEEEEEEECCC
Confidence 99999999999999999999999999999999999999999999999999999999887654 667889999999999
Q ss_pred CccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHhcCC--CCCCCCCchhhHhhhhhcCCCceeeEEEecCCCCCcHHHH
Q 001820 629 SERVNKSEVTGDRLKEAQHINRSLSALGDVIASLAQKN--PHVPYRNSKLTQLLQDSLGGQAKTLMFVHISPEPDAVGET 706 (1009)
Q Consensus 629 SER~~~s~~~G~rlkEa~~INkSLsaLg~VI~ALa~k~--~hIPYRdSKLT~LLqdsLGGnskT~mI~~ISP~~~~~~ET 706 (1009)
|||....+ .+.+++|+.+||+||.+|++||.+|++++ .|||||+||||+||+|+|||||+|+||+||||...+++||
T Consensus 230 sE~~~~~~-~~~~~~e~~~iN~Sl~~L~~vi~al~~~~~~~~vpyR~SkLT~lL~~~L~g~s~t~~i~~vsp~~~~~~eT 308 (321)
T cd01374 230 SERASQTG-AGERRKEGSFINKSLLTLGTVISKLSEGKNSGHIPYRDSKLTRILQPSLSGNARTAIICTISPASSHVEET 308 (321)
T ss_pred CCccccCC-CCccccccchhhhHHHHHHHHHHHHHhcCCCCcCCCcCCHHHHHHHHhcCCCceEEEEEEeCCccccHHHH
Confidence 99999988 89999999999999999999999999985 9999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcc
Q 001820 707 ISTLKFAERVATV 719 (1009)
Q Consensus 707 lsTLrFA~Rak~I 719 (1009)
++||+||+|+++|
T Consensus 309 l~TL~~a~r~~~i 321 (321)
T cd01374 309 LNTLKFASRAKKV 321 (321)
T ss_pred HHHHHHHHHHhcC
Confidence 9999999999875
No 20
>cd01372 KISc_KIF4 Kinesin motor domain, KIF4-like subfamily. Members of this group seem to perform a variety of functions, and have been implicated in neuronal organelle transport and chromosome segregation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain,
Probab=100.00 E-value=1.5e-72 Score=632.16 Aligned_cols=320 Identities=41% Similarity=0.653 Sum_probs=288.6
Q ss_pred CeEEEEEeCCCCCCCCCCC--cceEee-cCCeEEEeCCCCCCCCceeEEeceeeCCCCChHhHHhh-hHHHHHHHhcCCc
Q 001820 394 SIRVYCRVRPFLSGQSNYL--STVDHI-EEGNITINTPSKHGKGWKSFSFNKVYGPSATQAEVFSD-MQPLIRSVLDGYN 469 (1009)
Q Consensus 394 nIrV~~RVRP~~~~E~~~~--~~v~~~-~~~~i~v~~p~~~gk~~k~F~FD~VF~~~atQeeVF~~-v~pLV~svLdG~N 469 (1009)
+|+|||||||+...|.... .++... .+..+++.. .+.|.||+||+++++|++||+. +.|+|+++++|||
T Consensus 2 ~i~V~vRvRP~~~~e~~~~~~~~~~~~~~~~~v~~~~-------~~~f~FD~vf~~~~~q~~vy~~~~~plv~~~~~G~n 74 (341)
T cd01372 2 SVRVAVRVRPLLPKELLEGCQVCVSVVPGEPQVTVGT-------DKSFTFDYVFDPSTSQEEVYNTCVAPLVDGLFEGYN 74 (341)
T ss_pred CeEEEEECCCCCchhcccCCCeEEEEeCCCCEEEecC-------CcEEeccccCCCCCCHHHHHHHHHHHHHHHHhCCCc
Confidence 6999999999998775432 222222 334554432 5789999999999999999998 5899999999999
Q ss_pred eeEEeecccCCCCceeecCCCC--CCccccchhhHHHHHHHHHHHHhccceeEEEEEEEEEEecceeeecccCCC-CCcc
Q 001820 470 VCIFAYGQTGSGKTYTMTGPRE--LTEKSQGVNYRALSDLFLIAEQRKDIFRYDVAVQMLEIYNEQVRDLLVTDG-SNRR 546 (1009)
Q Consensus 470 ~~IfAYGqTGSGKTyTM~G~~~--~~~~~~GIipRal~dLF~~~~~~~~~~~y~V~vS~lEIYnE~V~DLL~~~~-~~~~ 546 (1009)
+||||||||||||||||+|+.. ....++||+||++++||..++......+|.|.|||+|||||+|+|||.+.. ....
T Consensus 75 ~~i~ayG~tgSGKT~Tm~G~~~~~~~~~~~Giipr~~~~LF~~~~~~~~~~~~~v~vS~~EIy~e~v~DLL~~~~~~~~~ 154 (341)
T cd01372 75 ATVLAYGQTGSGKTYTMGTAFTASEDEEEVGIIPRAIQHIFKKIDEKKDEPDFQLKVSFLELYNEEVRDLLSPSTSEKSP 154 (341)
T ss_pred cceeeecCCCCCCcEEecCCCccccccccCChHHHHHHHHHHHHHhccccceEEEEEEEEEeECCeeecCCCCcccCCCC
Confidence 9999999999999999999753 135679999999999999998877778999999999999999999998764 3567
Q ss_pred cccccCCCCCccCCCCeEEEeCCHHHHHHHHHhhhcccccccccccCCCCCCceEEEEEEeeeecC----------CCce
Q 001820 547 LEIRNSSQTGLNVPDASLIPVSSTADVINLMNLGQKNRAVGATALNDRSSRSHSCLTVHVQGKDLT----------SGTM 616 (1009)
Q Consensus 547 L~Ire~~~~g~~V~glt~v~V~S~eev~~lL~~G~~nR~vasT~~N~~SSRSH~IftI~V~~~~~~----------~~~~ 616 (1009)
+.|++++.++++|.|++++.|.|++|++.+|..|.++|.+++|.+|..|||||+||+|+|.+.... ....
T Consensus 155 l~i~e~~~~~~~i~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~sSRsH~i~~i~v~~~~~~~~~~~~~~~~~~~~ 234 (341)
T cd01372 155 IQIREDSKGNIIIVGLTEVTVNSAQEVMSCLEQGSLSRTTASTAMNSQSSRSHAIFTITLEQTRKNGPIAPMSGDDKNST 234 (341)
T ss_pred ceEEECCCCCEecCCCEEEEECCHHHHHHHHHHHHHhcccccccCCCccCcCcEEEEEEEEEEecCCccccccccCCCce
Confidence 999999999999999999999999999999999999999999999999999999999999988763 3456
Q ss_pred EEEEEEEEeccCCccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHhcCC---CCCCCCCchhhHhhhhhcCCCceeeEE
Q 001820 617 YRGCMHLVDLAGSERVNKSEVTGDRLKEAQHINRSLSALGDVIASLAQKN---PHVPYRNSKLTQLLQDSLGGQAKTLMF 693 (1009)
Q Consensus 617 ~~s~L~LVDLAGSER~~~s~~~G~rlkEa~~INkSLsaLg~VI~ALa~k~---~hIPYRdSKLT~LLqdsLGGnskT~mI 693 (1009)
..|+|+||||||||+..++++.|++++|+..||+||.+|++||.+|+.++ .|||||+||||+||+|+||||++|+||
T Consensus 235 ~~s~l~~VDLAGsE~~~~~~~~~~~~~e~~~in~sl~aL~~vi~al~~~~~~~~~ipyR~S~LT~lL~~~Lgg~s~t~~I 314 (341)
T cd01372 235 LTSKFHFVDLAGSERLKKTGATGDRLKEGISINSGLLALGNVISALGDESKKGSHVPYRDSKLTRLLQDSLGGNSHTLMI 314 (341)
T ss_pred eeEEEEEEECCCCcccccccCchhHhHHHHHHhHHHHHHHHHHHHHHhcCCCCCCCCCcccHHHHHHHHhcCCCceEEEE
Confidence 88999999999999999999999999999999999999999999999876 799999999999999999999999999
Q ss_pred EecCCCCCcHHHHHHHHHHHHHhhccc
Q 001820 694 VHISPEPDAVGETISTLKFAERVATVE 720 (1009)
Q Consensus 694 ~~ISP~~~~~~ETlsTLrFA~Rak~I~ 720 (1009)
+||||...+++||++||+||+|+++|+
T Consensus 315 ~~vsp~~~~~~eTl~tL~~a~~~~~ik 341 (341)
T cd01372 315 ACVSPADSNFEETLNTLKYANRARNIK 341 (341)
T ss_pred EEeCCChhhHHHHHHHHHHHHHhccCC
Confidence 999999999999999999999999885
No 21
>cd01375 KISc_KIF9_like Kinesin motor domain, KIF9-like subgroup; might play a role in cell shape remodeling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80
Probab=100.00 E-value=1.8e-72 Score=630.43 Aligned_cols=319 Identities=45% Similarity=0.649 Sum_probs=285.5
Q ss_pred CeEEEEEeCCCCCCCCCCCcceEeecCCeEEEeCCCCC-------CCCceeEEeceeeCCCCChHhHHhhh-HHHHHHHh
Q 001820 394 SIRVYCRVRPFLSGQSNYLSTVDHIEEGNITINTPSKH-------GKGWKSFSFNKVYGPSATQAEVFSDM-QPLIRSVL 465 (1009)
Q Consensus 394 nIrV~~RVRP~~~~E~~~~~~v~~~~~~~i~v~~p~~~-------gk~~k~F~FD~VF~~~atQeeVF~~v-~pLV~svL 465 (1009)
.|||+|||||+...+.. ......+...+++..|... +...+.|.||+||++ ++|++||+.+ .|+|++++
T Consensus 1 ~i~V~vRvRP~~~~~~~--~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~f~FD~vf~~-~~q~~vy~~~~~p~v~~~~ 77 (334)
T cd01375 1 TIQVFVRVRPTPTKQGS--SIKLGPDGKSVSSNLPKDLVRGVVNNQQEDFSFKFDGVFHN-ASQEEVYETVAKPVVDSAL 77 (334)
T ss_pred CeEEEEECCCCCCCCCc--cEEEcCCCCEEEEecccccccccccCCcCceEEEcCcccCC-CCHHHHHHHHHHHHHHHHh
Confidence 48999999999875443 2223334456666665331 224678999999999 9999999985 89999999
Q ss_pred cCCceeEEeecccCCCCceeecCCCCCCccccchhhHHHHHHHHHHHHhccceeEEEEEEEEEEecceeeecccCCC---
Q 001820 466 DGYNVCIFAYGQTGSGKTYTMTGPRELTEKSQGVNYRALSDLFLIAEQRKDIFRYDVAVQMLEIYNEQVRDLLVTDG--- 542 (1009)
Q Consensus 466 dG~N~~IfAYGqTGSGKTyTM~G~~~~~~~~~GIipRal~dLF~~~~~~~~~~~y~V~vS~lEIYnE~V~DLL~~~~--- 542 (1009)
+|||+||||||||||||||||+|+.. ...++||+||++++||..++... ...|.|++||+|||||+|+|||++..
T Consensus 78 ~G~n~~i~ayG~tgSGKTyTm~G~~~-~~~~~Glipr~~~~lf~~~~~~~-~~~~~v~~S~~Eiy~e~v~DLL~~~~~~~ 155 (334)
T cd01375 78 DGYNGTIFAYGQTGAGKTFTMTGGTE-SYKDRGLIPRALEQVFREVAMRA-TKTYTVHVSYLEIYNEQLYDLLGDTPEAL 155 (334)
T ss_pred CCCccceeeecCCCCCCeEEccCCCC-cccCCchHHHHHHHHHHHHHhcc-CcceEEEEEEEEEECCEeecCCCCCcccc
Confidence 99999999999999999999999764 34578999999999999987754 45799999999999999999998774
Q ss_pred -CCcccccccCCCCCccCCCCeEEEeCCHHHHHHHHHhhhcccccccccccCCCCCCceEEEEEEeeee--cCCCceEEE
Q 001820 543 -SNRRLEIRNSSQTGLNVPDASLIPVSSTADVINLMNLGQKNRAVGATALNDRSSRSHSCLTVHVQGKD--LTSGTMYRG 619 (1009)
Q Consensus 543 -~~~~L~Ire~~~~g~~V~glt~v~V~S~eev~~lL~~G~~nR~vasT~~N~~SSRSH~IftI~V~~~~--~~~~~~~~s 619 (1009)
..+.+.|++++.++++|.|++++.|.+++|++.+|..|.++|.+++|.+|..|||||+||+|+|.+.+ ........|
T Consensus 156 ~~~~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~~~~~g~~~R~~~~t~~n~~sSRSH~i~~l~v~~~~~~~~~~~~~~s 235 (334)
T cd01375 156 ESLPAVTILEDSEQNIHVKGLSLHSATTEEEALNLLFLGETNRTIAETSMNQASSRSHCIFTIHLESRSREAGSEVVRLS 235 (334)
T ss_pred ccCCceEEEEcCCCCEEeCCcEEEEeCCHHHHHHHHHHHHhhcccccCcCcCCcCcCeEEEEEEEEEEecCCCCCceEEE
Confidence 34678999999999999999999999999999999999999999999999999999999999999873 344567889
Q ss_pred EEEEEeccCCccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHhcCC-CCCCCCCchhhHhhhhhcCCCceeeEEEecCC
Q 001820 620 CMHLVDLAGSERVNKSEVTGDRLKEAQHINRSLSALGDVIASLAQKN-PHVPYRNSKLTQLLQDSLGGQAKTLMFVHISP 698 (1009)
Q Consensus 620 ~L~LVDLAGSER~~~s~~~G~rlkEa~~INkSLsaLg~VI~ALa~k~-~hIPYRdSKLT~LLqdsLGGnskT~mI~~ISP 698 (1009)
+|+|||||||||..+++..+.+++|+.+||+||++|++||.+|++++ .|||||+||||+||+|+|||||+|+||+||||
T Consensus 236 ~l~~VDLAGsEr~~~~~~~~~~~~e~~~iN~SL~~L~~vi~~l~~~~~~~ipyRdSkLT~lL~d~Lgg~~~t~~I~~vsp 315 (334)
T cd01375 236 KLNLVDLAGSERVSKTGVSGQVLKEAKYINKSLSFLEQVINALSEKARTHVPYRNSKLTHVLRDSLGGNCKTVMLATIWV 315 (334)
T ss_pred EEEEEECCCCCccccccCchhhhhhhhhhhhhHHHHHHHHHHHHhCCCCCCCCcccHHHHHHHHhcCCCceEEEEEEeCC
Confidence 99999999999999999999999999999999999999999999988 99999999999999999999999999999999
Q ss_pred CCCcHHHHHHHHHHHHHhh
Q 001820 699 EPDAVGETISTLKFAERVA 717 (1009)
Q Consensus 699 ~~~~~~ETlsTLrFA~Rak 717 (1009)
...+++||++||+||+|++
T Consensus 316 ~~~~~~eTl~TL~fa~r~~ 334 (334)
T cd01375 316 EPSNLDETLSTLRFAQRVA 334 (334)
T ss_pred chhhHHHHHHHHHHHHhcC
Confidence 9999999999999999984
No 22
>cd00106 KISc Kinesin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), in some its is found in the middle (M-type), or C-terminal (C-type). N-type and M-type kinesins are (+) end-directed motors, while C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coil
Probab=100.00 E-value=8.1e-69 Score=598.03 Aligned_cols=320 Identities=47% Similarity=0.750 Sum_probs=293.1
Q ss_pred CeEEEEEeCCCCCCCCCCCcceEeecC-CeEEEeCCCCC-CCCceeEEeceeeCCCCChHhHHhhh-HHHHHHHhcCCce
Q 001820 394 SIRVYCRVRPFLSGQSNYLSTVDHIEE-GNITINTPSKH-GKGWKSFSFNKVYGPSATQAEVFSDM-QPLIRSVLDGYNV 470 (1009)
Q Consensus 394 nIrV~~RVRP~~~~E~~~~~~v~~~~~-~~i~v~~p~~~-gk~~k~F~FD~VF~~~atQeeVF~~v-~pLV~svLdG~N~ 470 (1009)
+|+|||||||+...+......+..+++ ++|++..|... ....+.|.||+||+++++|++||+.+ .|+|+++++|+|+
T Consensus 1 ~i~V~vRvrP~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~f~fd~vf~~~~~q~~v~~~~~~~~v~~~~~G~~~ 80 (328)
T cd00106 1 NIRVVVRIRPLNGRESKSEESCITVDDNKTVTLTPPKDGRKAGPKSFTFDHVFDPNSTQEDVYETTAKPLVESVLEGYNG 80 (328)
T ss_pred CeEEEEEcCCCCcccccCCCcEEEECCCCEEEEecCccccCcCceEEECCeEEcCCCCHHHHHHHHHHHHHHHHhCCCce
Confidence 699999999998876444445555655 88888876532 22578999999999999999999985 7999999999999
Q ss_pred eEEeecccCCCCceeecCCCCCCccccchhhHHHHHHHHHHHHhcc-ceeEEEEEEEEEEecceeeecccCCCCCccccc
Q 001820 471 CIFAYGQTGSGKTYTMTGPRELTEKSQGVNYRALSDLFLIAEQRKD-IFRYDVAVQMLEIYNEQVRDLLVTDGSNRRLEI 549 (1009)
Q Consensus 471 ~IfAYGqTGSGKTyTM~G~~~~~~~~~GIipRal~dLF~~~~~~~~-~~~y~V~vS~lEIYnE~V~DLL~~~~~~~~L~I 549 (1009)
||||||||||||||||+|+. .++||+||++++||..+..... ...|.|.+||+|||+|+|+|||.+......+.+
T Consensus 81 ~i~~yG~tgSGKT~tl~G~~----~~~Gli~~~~~~Lf~~~~~~~~~~~~~~v~~S~~Ei~~e~v~DLL~~~~~~~~l~i 156 (328)
T cd00106 81 TIFAYGQTGSGKTYTMFGSP----KDPGIIPRALEDLFNLIDERKEKNKSFSVSVSYLEIYNEKVYDLLSPEPPSKPLSL 156 (328)
T ss_pred eEEEecCCCCCCeEEecCCC----CCCchHHHHHHHHHHHHhhccccCceEEEEEEEEEEECCEeEECCCCCCCCCCcEE
Confidence 99999999999999999954 6789999999999999887653 568999999999999999999987645678999
Q ss_pred ccCCCCCccCCCCeEEEeCCHHHHHHHHHhhhcccccccccccCCCCCCceEEEEEEeeeecCCCc--eEEEEEEEEecc
Q 001820 550 RNSSQTGLNVPDASLIPVSSTADVINLMNLGQKNRAVGATALNDRSSRSHSCLTVHVQGKDLTSGT--MYRGCMHLVDLA 627 (1009)
Q Consensus 550 re~~~~g~~V~glt~v~V~S~eev~~lL~~G~~nR~vasT~~N~~SSRSH~IftI~V~~~~~~~~~--~~~s~L~LVDLA 627 (1009)
++++.+++++.|++++.|.|++|++.+|..|.++|.+++|.+|..|||||+||+|+|...+..... ...|+|+|||||
T Consensus 157 ~~~~~~~~~v~~l~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~~~~~~~~~s~l~~VDLa 236 (328)
T cd00106 157 REDPKGGVYVKGLTEVEVGSAEDALSLLQKGLKNRTTASTAMNERSSRSHAIFTIHVEQRNTTNDGRSIKSSKLNLVDLA 236 (328)
T ss_pred EEcCCCCEEEeCCEEEEeCCHHHHHHHHHHHHhhcCcccCcCCCCcCcCcEEEEEEEEEEecCCCCccEEEEEEEEEECC
Confidence 999999999999999999999999999999999999999999999999999999999998876654 788999999999
Q ss_pred CCccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHhcCC--CCCCCCCchhhHhhhhhcCCCceeeEEEecCCCCCcHHH
Q 001820 628 GSERVNKSEVTGDRLKEAQHINRSLSALGDVIASLAQKN--PHVPYRNSKLTQLLQDSLGGQAKTLMFVHISPEPDAVGE 705 (1009)
Q Consensus 628 GSER~~~s~~~G~rlkEa~~INkSLsaLg~VI~ALa~k~--~hIPYRdSKLT~LLqdsLGGnskT~mI~~ISP~~~~~~E 705 (1009)
|+|+....+..+.+++|+..||+||++|++||.+|+.++ .|||||+||||+||||+|||+++|+||+||+|...+++|
T Consensus 237 Gse~~~~~~~~~~~~~e~~~in~sl~~L~~vl~~l~~~~~~~~ip~r~SkLT~lL~~~l~g~~~t~~I~~vsp~~~~~~e 316 (328)
T cd00106 237 GSERAKKTGAEGDRLKEAKNINKSLSALGNVISALSSGQKKKHIPYRDSKLTRLLQDSLGGNSKTLMIANISPSSENYDE 316 (328)
T ss_pred CCCcccccCCchhhhHhHHhhhhhHHHHHHHHHHHHhcCCCCcCCCcCcHHHHHHHHhcCCCCeEEEEEEeCCchhhHHH
Confidence 999999999999999999999999999999999999988 999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhh
Q 001820 706 TISTLKFAERVA 717 (1009)
Q Consensus 706 TlsTLrFA~Rak 717 (1009)
|++||+||+|++
T Consensus 317 Tl~tL~~a~r~~ 328 (328)
T cd00106 317 TLSTLRFASRAK 328 (328)
T ss_pred HHHHHHHHHhcC
Confidence 999999999985
No 23
>smart00129 KISc Kinesin motor, catalytic domain. ATPase. Microtubule-dependent molecular motors that play important roles in intracellular transport of organelles and in cell division.
Probab=100.00 E-value=2.3e-68 Score=596.51 Aligned_cols=324 Identities=49% Similarity=0.756 Sum_probs=293.8
Q ss_pred CeEEEEEeCCCCCCCCCC-CcceEeecC---CeEEEeCCCCCCCCceeEEeceeeCCCCChHhHHhhh-HHHHHHHhcCC
Q 001820 394 SIRVYCRVRPFLSGQSNY-LSTVDHIEE---GNITINTPSKHGKGWKSFSFNKVYGPSATQAEVFSDM-QPLIRSVLDGY 468 (1009)
Q Consensus 394 nIrV~~RVRP~~~~E~~~-~~~v~~~~~---~~i~v~~p~~~gk~~k~F~FD~VF~~~atQeeVF~~v-~pLV~svLdG~ 468 (1009)
+|+|+|||||+...|... ...+..+.+ .++++..+. .....+.|.||+||+++++|++||+.+ .|+|+.+++|+
T Consensus 1 ~v~v~vRvrP~~~~e~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~~f~fD~vf~~~~~q~~v~~~~~~p~v~~~~~G~ 79 (335)
T smart00129 1 NIRVVVRVRPLNKREKSRKSPSVVPFDDKDGKTLNVNSPK-NRKEEKKFTFDKVFGATASQEDVFEETAAPLVDSVLEGY 79 (335)
T ss_pred CcEEEEEcCcCCccchhcCCceEEEEcCCCCCEEEEeCCC-CCCCCeEEecCEEECCCCChHHHHHHHHHHHHHHHhcCC
Confidence 589999999998887542 233333432 367776653 334578999999999999999999984 89999999999
Q ss_pred ceeEEeecccCCCCceeecCCCCCCccccchhhHHHHHHHHHHHHhccceeEEEEEEEEEEecceeeecccCCCCCcccc
Q 001820 469 NVCIFAYGQTGSGKTYTMTGPRELTEKSQGVNYRALSDLFLIAEQRKDIFRYDVAVQMLEIYNEQVRDLLVTDGSNRRLE 548 (1009)
Q Consensus 469 N~~IfAYGqTGSGKTyTM~G~~~~~~~~~GIipRal~dLF~~~~~~~~~~~y~V~vS~lEIYnE~V~DLL~~~~~~~~L~ 548 (1009)
|+||||||+|||||||||+|+ ..++||+||++++||..+....+...|.|+|||+|||+|+|+|||++. .+.+.
T Consensus 80 ~~~i~~yG~tgSGKT~tl~G~----~~~~Gli~~~~~~Lf~~~~~~~~~~~~~v~~S~~ei~~e~v~DLL~~~--~~~l~ 153 (335)
T smart00129 80 NATIFAYGQTGSGKTYTMSGT----PDSPGIIPRALKDLFEKIDKLEEGWQFQVKVSYLEIYNEKIRDLLNPS--PKKLE 153 (335)
T ss_pred ceeEEEeCCCCCCCceEecCC----CCCCCHHHHHHHHHHHHhhhcccCceEEEEEEEEEEECCEEEECcCCC--CCCcE
Confidence 999999999999999999995 356899999999999999877767799999999999999999999765 56789
Q ss_pred cccCCCCCccCCCCeEEEeCCHHHHHHHHHhhhcccccccccccCCCCCCceEEEEEEeee--ecCCCceEEEEEEEEec
Q 001820 549 IRNSSQTGLNVPDASLIPVSSTADVINLMNLGQKNRAVGATALNDRSSRSHSCLTVHVQGK--DLTSGTMYRGCMHLVDL 626 (1009)
Q Consensus 549 Ire~~~~g~~V~glt~v~V~S~eev~~lL~~G~~nR~vasT~~N~~SSRSH~IftI~V~~~--~~~~~~~~~s~L~LVDL 626 (1009)
+++++.+++++.|++++.|.|++|+.++|..|.++|.+++|.+|..|||||+||+|+|.+. +...+....|+|+||||
T Consensus 154 i~~~~~~~~~i~~l~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~ssRsH~i~~l~v~~~~~~~~~~~~~~s~l~~VDL 233 (335)
T smart00129 154 IREDKKGGVYVKGLTEISVSSFEEVYNLLEKGNKNRTVAATKMNEESSRSHAVFTITVESKIKNSSSGSGKASKLNLVDL 233 (335)
T ss_pred EEECCCCCEEecCCEEEEeCCHHHHHHHHHHHHhccccccCCCCCCCCcceEEEEEEEEEEecCCCCCCEEEEEEEEEEC
Confidence 9999999999999999999999999999999999999999999999999999999999976 44556678999999999
Q ss_pred cCCccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHhc--CCCCCCCCCchhhHhhhhhcCCCceeeEEEecCCCCCcHH
Q 001820 627 AGSERVNKSEVTGDRLKEAQHINRSLSALGDVIASLAQ--KNPHVPYRNSKLTQLLQDSLGGQAKTLMFVHISPEPDAVG 704 (1009)
Q Consensus 627 AGSER~~~s~~~G~rlkEa~~INkSLsaLg~VI~ALa~--k~~hIPYRdSKLT~LLqdsLGGnskT~mI~~ISP~~~~~~ 704 (1009)
||+||....++.|.+++|+..||+||.+|++||.+|++ +..|||||+|+||+||+++|||+++|+||+||||...+++
T Consensus 234 aGse~~~~~~~~~~~~~e~~~in~sl~~L~~~l~~l~~~~~~~~ip~r~S~LT~lL~~~L~g~~~~~~i~~vsp~~~~~~ 313 (335)
T smart00129 234 AGSERASKTGAEGDRLKEAGNINKSLSALGNVINALADGQKSRHIPYRDSKLTRLLQDSLGGNSKTLMIANISPSLSNLE 313 (335)
T ss_pred CCCCccccccChhHHHHhhchhhhHHHHHHHHHHHHHhcCCCCCCCCcCcHhHHHHHHHcCCCCeEEEEEEcCCCccchH
Confidence 99999999999999999999999999999999999998 6789999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhccccCcc
Q 001820 705 ETISTLKFAERVATVELGAA 724 (1009)
Q Consensus 705 ETlsTLrFA~Rak~I~~~~~ 724 (1009)
||++||+||+++++|++++.
T Consensus 314 eTl~tL~~a~~~~~i~~~p~ 333 (335)
T smart00129 314 ETLSTLRFASRAKEIKNKAI 333 (335)
T ss_pred HHHHHHHHHHHHhhcccCCC
Confidence 99999999999999998764
No 24
>PF00225 Kinesin: Kinesin motor domain; InterPro: IPR001752 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. The kinesin motor domain is located in the N-terminal part of most of the above proteins, with the exception of KAR3, klpA, and ncd where it is located in the C-terminal section. The kinesin motor domain contains about 330 amino acids. An ATP-binding motif of type A is found near position 80 to 90, the C-terminal half of the domain is involved in microtubule-binding.; GO: 0003777 microtubule motor activity, 0005524 ATP binding, 0007018 microtubule-based movement; PDB: 3NWN_A 2Y5W_A 2Y65_C 3BFN_A 2WBE_C 2ZFL_A 2ZFI_A 1I6I_A 2ZFM_A 1IA0_K ....
Probab=100.00 E-value=1.7e-68 Score=597.04 Aligned_cols=318 Identities=46% Similarity=0.722 Sum_probs=277.5
Q ss_pred EeCCCCCCCCCCCcc-eEeec---CCeEEEeCCCCCCCCceeEEeceeeCCCCChHhHHhh-hHHHHHHHhcCCceeEEe
Q 001820 400 RVRPFLSGQSNYLST-VDHIE---EGNITINTPSKHGKGWKSFSFNKVYGPSATQAEVFSD-MQPLIRSVLDGYNVCIFA 474 (1009)
Q Consensus 400 RVRP~~~~E~~~~~~-v~~~~---~~~i~v~~p~~~gk~~k~F~FD~VF~~~atQeeVF~~-v~pLV~svLdG~N~~IfA 474 (1009)
||||+...|...... ..... ................+.|.||+||+++++|++||+. +.|+|+++++|||+||||
T Consensus 1 RvRP~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~FD~vf~~~~~q~~vy~~~~~~~v~~~l~G~n~~i~a 80 (335)
T PF00225_consen 1 RVRPLNESEKESSAESIVSVDNQDSNQNKQSVNSNNSQKEKSFRFDRVFDEDATQEDVYEEVVSPLVDSVLDGYNATIFA 80 (335)
T ss_dssp EEES-CHHHHHTTTEBCEEEETTETEEEEEETTEEETTEEEEEEESEEEETTSTHHHHHHHHTHHHHHHHHTT-EEEEEE
T ss_pred CcCCCCHHHHhCCCcEEEEecCCccccccccccccCCCCceEEEcCeEECCCCCHHHHHHHHHHHHHHHhhcCCceEEEe
Confidence 899998876553221 11111 1111111111222357899999999999999999998 599999999999999999
Q ss_pred ecccCCCCceeecCCCCCCccccchhhHHHHHHHHHHHHhccc--eeEEEEEEEEEEecceeeecccCCC--CCcccccc
Q 001820 475 YGQTGSGKTYTMTGPRELTEKSQGVNYRALSDLFLIAEQRKDI--FRYDVAVQMLEIYNEQVRDLLVTDG--SNRRLEIR 550 (1009)
Q Consensus 475 YGqTGSGKTyTM~G~~~~~~~~~GIipRal~dLF~~~~~~~~~--~~y~V~vS~lEIYnE~V~DLL~~~~--~~~~L~Ir 550 (1009)
||+|||||||||+|+ ....++||+||++++||..++..... ..|.|+|||+|||||+|+|||.+.. ....+.|+
T Consensus 81 yG~tgSGKT~Tm~G~--~~~~~~Gli~~~~~~lf~~~~~~~~~~~~~~~v~vS~~EIy~e~v~DLL~~~~~~~~~~l~i~ 158 (335)
T PF00225_consen 81 YGQTGSGKTYTMFGS--NDPSEPGLIPRALRDLFSQIEERKEKSGYEFSVSVSYLEIYNEKVYDLLSPNNSKSRKPLKIR 158 (335)
T ss_dssp EESTTSSHHHHHTBS--TSTTTBSHHHHHHHHHHHHHHHHTTTSTEEEEEEEEEEEEETTEEEETTSTTSSSTTSEBEEE
T ss_pred ecccccccccccccc--ccccccchhhhHHHHHhhhhccccccccccccccccchhhhhhhhhhhcCcccccccccccee
Confidence 999999999999996 13567999999999999999887764 7899999999999999999998873 35679999
Q ss_pred cCCCCC-ccCCCCeEEEeCCHHHHHHHHHhhhcccccccccccCCCCCCceEEEEEEeeeecCCCc----eEEEEEEEEe
Q 001820 551 NSSQTG-LNVPDASLIPVSSTADVINLMNLGQKNRAVGATALNDRSSRSHSCLTVHVQGKDLTSGT----MYRGCMHLVD 625 (1009)
Q Consensus 551 e~~~~g-~~V~glt~v~V~S~eev~~lL~~G~~nR~vasT~~N~~SSRSH~IftI~V~~~~~~~~~----~~~s~L~LVD 625 (1009)
+++..| ++|.|++++.|.+.+|++.+|..|.++|.+++|.+|..|||||+||+|+|.+.+..... ...|+|+|||
T Consensus 159 ~~~~~g~~~i~~l~~~~v~s~~~~~~~l~~~~~~R~~~~t~~n~~sSRSH~i~~i~v~~~~~~~~~~~~~~~~s~l~~vD 238 (335)
T PF00225_consen 159 EDSNKGSVYIKGLTEVEVKSAEEALQLLKKGQKNRRTASTKMNARSSRSHAIFTIHVEQKDRDPSDDEESVKHSRLTFVD 238 (335)
T ss_dssp EETTTEEEEETTSEEEEESSHHHHHHHHHHHHHHHTCTSSSCTHHGGGSEEEEEEEEEEEETTTTTEEEEEEEEEEEEEE
T ss_pred eccccccceeeccccccccccccccccccchhhccccccccccccccccccccccccccccccccccccceeecceeeee
Confidence 999876 99999999999999999999999999999999999999999999999999998876654 4789999999
Q ss_pred ccCCccccCCcc-hhhhHHHHHHHHHHHHHHHHHHHHHhcC--CCCCCCCCchhhHhhhhhcCCCceeeEEEecCCCCCc
Q 001820 626 LAGSERVNKSEV-TGDRLKEAQHINRSLSALGDVIASLAQK--NPHVPYRNSKLTQLLQDSLGGQAKTLMFVHISPEPDA 702 (1009)
Q Consensus 626 LAGSER~~~s~~-~G~rlkEa~~INkSLsaLg~VI~ALa~k--~~hIPYRdSKLT~LLqdsLGGnskT~mI~~ISP~~~~ 702 (1009)
|||+||..+... .+.+++|+..||+||.+|++||.+|+++ ..|||||+||||+||+|+|||||+|+||+||+|...+
T Consensus 239 LaGsE~~~~~~~~~~~~~~e~~~in~Sl~~L~~vi~~L~~~~~~~~vpyr~SkLT~lL~d~l~g~s~t~~I~~vsp~~~~ 318 (335)
T PF00225_consen 239 LAGSERLKKSGASDGQRLKESSNINKSLSALGNVIRALAQGSKQSHVPYRDSKLTRLLKDSLGGNSKTILIVCVSPSSED 318 (335)
T ss_dssp EEESTGGCGCSSSSHHHHHHHHHHHHHHHHHHHHHHHHHCTTSTSSSCGGGSHHHHHTGGGTSSSSEEEEEEEE-SBGGG
T ss_pred cccccccccccccccccccccceecchhhhhhhhHhhhhccccchhhhhhcccccceecccccccccceeEEEcCCcccc
Confidence 999999999886 4889999999999999999999999998 9999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcc
Q 001820 703 VGETISTLKFAERVATV 719 (1009)
Q Consensus 703 ~~ETlsTLrFA~Rak~I 719 (1009)
++||++||+||+++++|
T Consensus 319 ~~eTl~tL~fa~~~~~I 335 (335)
T PF00225_consen 319 YEETLSTLRFASRAREI 335 (335)
T ss_dssp HHHHHHHHHHHHHHTTE
T ss_pred HHHHHHHHHHHHHHcCC
Confidence 99999999999999976
No 25
>KOG0247 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=4.9e-65 Score=587.91 Aligned_cols=328 Identities=40% Similarity=0.616 Sum_probs=292.1
Q ss_pred ccCCCeEEEEEeCCCCCCCCCCCcceEeecCCeEEEeCCCC--------CCCCceeEEeceeeCCCCChHhHHhh-hHHH
Q 001820 390 DLKGSIRVYCRVRPFLSGQSNYLSTVDHIEEGNITINTPSK--------HGKGWKSFSFNKVYGPSATQAEVFSD-MQPL 460 (1009)
Q Consensus 390 elkGnIrV~~RVRP~~~~E~~~~~~v~~~~~~~i~v~~p~~--------~gk~~k~F~FD~VF~~~atQeeVF~~-v~pL 460 (1009)
+.+..|.|||||||+.+ ......++..+++.+|.+..|.. .+...+.|.|.+||+|+++|.+||+. +.|+
T Consensus 28 ~~~d~v~v~~rvrP~~~-~~~~~g~l~v~n~~tivL~~P~d~~~~~~~n~~q~e~~fsFt~VF~p~~tQ~dvF~~~~~pl 106 (809)
T KOG0247|consen 28 ESKDPVLVVCRVRPLSD-ASEDEGCLRVINEETIVLETPEDSFARRSVNGGQMEKKFSFTKVFGPSVTQADVFDTTVAPL 106 (809)
T ss_pred hhhcchheeEeecCCCC-CccccceEEEeccceeEeeCcHHHHhhhccCccceeeEeeeeeecCCCccHHHHHHHHhHHH
Confidence 56789999999999875 23345677888999999988742 22356889999999999999999998 5899
Q ss_pred HHHHhcCCceeEEeecccCCCCceeecCCCCCCccccchhhHHHHHHHHHHHHh--------------------------
Q 001820 461 IRSVLDGYNVCIFAYGQTGSGKTYTMTGPRELTEKSQGVNYRALSDLFLIAEQR-------------------------- 514 (1009)
Q Consensus 461 V~svLdG~N~~IfAYGqTGSGKTyTM~G~~~~~~~~~GIipRal~dLF~~~~~~-------------------------- 514 (1009)
|.+++.|.|..+|+||.|||||||||+|+ ...+||+||+++-||..++.+
T Consensus 107 V~dlLkgqn~LlFTyGVTgSGKTYTm~G~----~~~~GIlPR~Ld~iF~siq~~~~~k~~~kp~~s~~~e~~~~~~alL~ 182 (809)
T KOG0247|consen 107 VKDLLKGQNSLLFTYGVTGSGKTYTMTGT----PDRPGILPRALDVIFNSIQGRQAKKPVFKPLRSNLFEIKAEEDALLQ 182 (809)
T ss_pred HHHHHcccceeEEEeeccCCCceEEeecC----CCCCCchHHHHHHHHHHhhceeccCceeccccchHHHHHHHHHHHHh
Confidence 99999999999999999999999999994 457899999999999766421
Q ss_pred --------------------------------------ccceeEEEEEEEEEEecceeeecccCCCCC---cc-cccccC
Q 001820 515 --------------------------------------KDIFRYDVAVQMLEIYNEQVRDLLVTDGSN---RR-LEIRNS 552 (1009)
Q Consensus 515 --------------------------------------~~~~~y~V~vS~lEIYnE~V~DLL~~~~~~---~~-L~Ire~ 552 (1009)
.....|.|+|||+|||||.|||||.+.+.. .. ..++++
T Consensus 183 lkr~~~~nd~~~ts~~~~~~~~e~~e~~~~~e~~~~~l~~d~~ysV~VSf~EIYN~~iYDLLe~~s~q~~~~~~~ll~~d 262 (809)
T KOG0247|consen 183 LKREAMLNDRKSTSKAHRQSTPEYAEHIHVIEQPALELDEDIVYSVFVSFVEIYNNYIYDLLEDASFQGKLQKLKLLRED 262 (809)
T ss_pred hhhhhccccccCcchhhccccHHHHhhcchhcccccccCcCcEEEEEeeHHHHHHHHHHHhhccccccchhhhhhhhhhc
Confidence 012468999999999999999999765433 22 567889
Q ss_pred CCCCccCCCCeEEEeCCHHHHHHHHHhhhcccccccccccCCCCCCceEEEEEEeeeecC--CCceEEEEEEEEeccCCc
Q 001820 553 SQTGLNVPDASLIPVSSTADVINLMNLGQKNRAVGATALNDRSSRSHSCLTVHVQGKDLT--SGTMYRGCMHLVDLAGSE 630 (1009)
Q Consensus 553 ~~~g~~V~glt~v~V~S~eev~~lL~~G~~nR~vasT~~N~~SSRSH~IftI~V~~~~~~--~~~~~~s~L~LVDLAGSE 630 (1009)
.++.++|.|+++|.|++.+|++++|..|.++|++++|.+|..|||||+||+|.+-+.... +.....+.|.||||||||
T Consensus 263 ~~~~~~Vkgl~~V~VssseEA~~l~~lGqk~r~~asT~lN~~SSRSHsVFtIkl~q~~~~~~s~~i~vSqlsLvDLAGSE 342 (809)
T KOG0247|consen 263 TNGNMYVKGLTEVEVSSSEEALELFQLGQKRRRVASTKLNANSSRSHSVFTIKLVQAPRSQDSNQITVSQLSLVDLAGSE 342 (809)
T ss_pred cCCCeeeccccEEEeccHHHHHHHHHHHHhhhhhhheeccccccccceeEEEEeeecccccccCceeEEeeeeeecccch
Confidence 999999999999999999999999999999999999999999999999999999877655 567888999999999999
Q ss_pred cccCCcchhhhHHHHHHHHHHHHHHHHHHHHHhcC-----CCCCCCCCchhhHhhhhhcCCCceeeEEEecCCCCCcHHH
Q 001820 631 RVNKSEVTGDRLKEAQHINRSLSALGDVIASLAQK-----NPHVPYRNSKLTQLLQDSLGGQAKTLMFVHISPEPDAVGE 705 (1009)
Q Consensus 631 R~~~s~~~G~rlkEa~~INkSLsaLg~VI~ALa~k-----~~hIPYRdSKLT~LLqdsLGGnskT~mI~~ISP~~~~~~E 705 (1009)
|..+++++|.||+||.+||.||++||+||.+|.++ +.+|||||||||++++.+|.|..+.+||+||+|.+++|+|
T Consensus 343 Rt~rtq~sG~RLrEagNINtSLmTLg~Cie~LR~nqk~ks~~~VPyRdSKLThlfq~~f~G~gki~MIV~vnp~~e~YdE 422 (809)
T KOG0247|consen 343 RTNRTQNSGERLREAGNINTSLMTLRRCIDVLRENQKSKSQKIVPYRDSKLTHLFKNYFDGKGKIRMIVCVNPKAEDYDE 422 (809)
T ss_pred hcccccchhHHHHhhccccHHHHHHHHHHHHHHHHhhhhccccCcchHHHHHHHHHHhcCCCCcEEEEEecCCchhhHHH
Confidence 99999999999999999999999999999999753 4689999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhccccC
Q 001820 706 TISTLKFAERVATVELG 722 (1009)
Q Consensus 706 TlsTLrFA~Rak~I~~~ 722 (1009)
+++.|+||+-+..|.+.
T Consensus 423 nl~vlkFaeiaq~v~v~ 439 (809)
T KOG0247|consen 423 NLNVLKFAEIAQEVEVA 439 (809)
T ss_pred HHHHHHHHHhccccccc
Confidence 99999999999888643
No 26
>KOG0246 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=2.7e-64 Score=568.27 Aligned_cols=326 Identities=31% Similarity=0.469 Sum_probs=285.4
Q ss_pred CCeEEEEEeCCCCCCCCCCC-cceEee-cCCeEEEeCCCCCC-----CCceeEEeceeeCCCCChHhHHhh-hHHHHHHH
Q 001820 393 GSIRVYCRVRPFLSGQSNYL-STVDHI-EEGNITINTPSKHG-----KGWKSFSFNKVYGPSATQAEVFSD-MQPLIRSV 464 (1009)
Q Consensus 393 GnIrV~~RVRP~~~~E~~~~-~~v~~~-~~~~i~v~~p~~~g-----k~~k~F~FD~VF~~~atQeeVF~~-v~pLV~sv 464 (1009)
..|.|+||-||++..|.... ..++.+ .++.++|+.|...- -..+.|.||.+|+..+++++||.. ++|||..+
T Consensus 208 hrI~VCVRKRPLnkkE~~~keiDvisvps~~~l~vHEpk~kVDLtkYlEn~~F~FDyaFDe~~sNe~VYrfTa~PlV~~I 287 (676)
T KOG0246|consen 208 HRICVCVRKRPLNKKELTKKEIDVISVPSKNVLVVHEPKLKVDLTKYLENQKFRFDYAFDESASNELVYRFTAKPLVKTI 287 (676)
T ss_pred ceEEEEeecCCCCchhccccccceEeccccceEEeeccccccchHHHHhhceEEEeeecccccchHHHHHHhhhHHHHHH
Confidence 57999999999998876522 234444 56667776653221 146789999999999999999997 69999999
Q ss_pred hcCCceeEEeecccCCCCceeecCCCCCCc--cccchhhHHHHHHHHHHHH-hccceeEEEEEEEEEEecceeeecccCC
Q 001820 465 LDGYNVCIFAYGQTGSGKTYTMTGPRELTE--KSQGVNYRALSDLFLIAEQ-RKDIFRYDVAVQMLEIYNEQVRDLLVTD 541 (1009)
Q Consensus 465 LdG~N~~IfAYGqTGSGKTyTM~G~~~~~~--~~~GIipRal~dLF~~~~~-~~~~~~y~V~vS~lEIYnE~V~DLL~~~ 541 (1009)
|+|--+|+||||||||||||||-|+..... -..||..++.+|+|..+.. ......+.|+++|||||+.+|||||+.
T Consensus 288 F~~G~ATCFAYGQTGSGKT~TMggdfsgk~q~~s~giya~aa~Dvf~~L~~p~Y~~~~l~v~~tFFEIYgGKvfDLL~~- 366 (676)
T KOG0246|consen 288 FEGGMATCFAYGQTGSGKTYTMGGDFSGKAQDCSKGIYALAARDVFRLLRQPTYRKLDLKVYVTFFEIYGGKVYDLLND- 366 (676)
T ss_pred HhCCceeeeeeccCCCCceeecccccCcccccccccchhhhhhHHHHHhcccchhhcceEEEEEEEEEeCcchhhhhcc-
Confidence 999999999999999999999988654222 2459999999999998865 334567999999999999999999954
Q ss_pred CCCcccccccCCCCCccCCCCeEEEeCCHHHHHHHHHhhhcccccccccccCCCCCCceEEEEEEeeeecCCCceEEEEE
Q 001820 542 GSNRRLEIRNSSQTGLNVPDASLIPVSSTADVINLMNLGQKNRAVGATALNDRSSRSHSCLTVHVQGKDLTSGTMYRGCM 621 (1009)
Q Consensus 542 ~~~~~L~Ire~~~~g~~V~glt~v~V~S~eev~~lL~~G~~nR~vasT~~N~~SSRSH~IftI~V~~~~~~~~~~~~s~L 621 (1009)
.++|.+++|.+..+.|.||.+..|.+.+||++||+.|+.-|+.+.|..|..|||||+||+|.+.... +...+|++
T Consensus 367 --k~KLrvLEDg~QQVqVVGLqE~~v~~~eeVl~lIe~Gns~RtsG~TsANs~SSRSHAvfQIilr~~~---~~k~hGKf 441 (676)
T KOG0246|consen 367 --KKKLRVLEDGNQQVQVVGLQEEEVSGVEEVLELIEKGNSCRTSGQTSANSNSSRSHAVFQIILRKHG---EFKLHGKF 441 (676)
T ss_pred --ccceEEeecCCceEEEeeceeeeccCHHHHHHHHHhcccccccCcccCcccccccceeEeeeeecCC---cceeEeEE
Confidence 5789999999999999999999999999999999999999999999999999999999999996432 24678999
Q ss_pred EEEeccCCccc-cCCcchhhhHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCchhhHhhhhhcCC-CceeeEEEecCCC
Q 001820 622 HLVDLAGSERV-NKSEVTGDRLKEAQHINRSLSALGDVIASLAQKNPHVPYRNSKLTQLLQDSLGG-QAKTLMFVHISPE 699 (1009)
Q Consensus 622 ~LVDLAGSER~-~~s~~~G~rlkEa~~INkSLsaLg~VI~ALa~k~~hIPYRdSKLT~LLqdsLGG-nskT~mI~~ISP~ 699 (1009)
.||||||+||. +.+.+..++..||+.|||||.||..||.||.+.+.|+|||.||||++|+|||-| |++|+||+||||.
T Consensus 442 SlIDLAGnERGaDts~adRqtRlEGAEINKSLLALKECIRaLg~nk~H~PFR~SKLTqVLRDSFIGenSrTcMIA~ISPg 521 (676)
T KOG0246|consen 442 SLIDLAGNERGADTSSADRQTRLEGAEINKSLLALKECIRALGRNKSHLPFRGSKLTQVLRDSFIGENSRTCMIATISPG 521 (676)
T ss_pred EEEEccCCccCCcccccchhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCchhhhHHHHHHHhhcCCCCceEEEEEeCCC
Confidence 99999999994 556777788899999999999999999999999999999999999999999988 9999999999999
Q ss_pred CCcHHHHHHHHHHHHHhhccccCcc
Q 001820 700 PDAVGETISTLKFAERVATVELGAA 724 (1009)
Q Consensus 700 ~~~~~ETlsTLrFA~Rak~I~~~~~ 724 (1009)
..+++.||+|||||+|||.......
T Consensus 522 ~~ScEhTLNTLRYAdRVKeLsv~~~ 546 (676)
T KOG0246|consen 522 ISSCEHTLNTLRYADRVKELSVDGG 546 (676)
T ss_pred cchhhhhHHHHHHHHHHHhhcCCCC
Confidence 9999999999999999998865443
No 27
>KOG0244 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=4.7e-63 Score=586.17 Aligned_cols=341 Identities=36% Similarity=0.579 Sum_probs=298.0
Q ss_pred eCCCCCCCCCCC--cceEee-cCCeEEEeCCCCCCCCceeEEeceeeCCCCChHhHHhh-hHHHHHHHhcCCceeEEeec
Q 001820 401 VRPFLSGQSNYL--STVDHI-EEGNITINTPSKHGKGWKSFSFNKVYGPSATQAEVFSD-MQPLIRSVLDGYNVCIFAYG 476 (1009)
Q Consensus 401 VRP~~~~E~~~~--~~v~~~-~~~~i~v~~p~~~gk~~k~F~FD~VF~~~atQeeVF~~-v~pLV~svLdG~N~~IfAYG 476 (1009)
|||+...|.... .|+... ....|++. +..+|+||+||.....|.++|+. |+|+++.+++|||++++|||
T Consensus 1 vRpl~~~e~~~g~~~c~~~~~~~pqv~ig-------~~~s~t~d~v~~~~~~Q~~~~e~~V~~l~~~lf~gynatvlayg 73 (913)
T KOG0244|consen 1 VRPLKQMEEEQGCRRCTEVSPRTPQVAIG-------KDASFTYDKVFLDLESQKEVYESCVRPLREKLFAGYNATVLAYG 73 (913)
T ss_pred CCCccchHHHhcchhhcccCCCCCceeec-------CCcceeeeeeccCchHHHHHHHHHHHHHHHHHhhhhcceeeeec
Confidence 688776654322 222211 22334332 35789999999999999999998 69999999999999999999
Q ss_pred ccCCCCceeecCCCCCCccccchhhHHHHHHHHHHHHhccceeEEEEEEEEEEecceeeecccCCCCCcccccccCCCCC
Q 001820 477 QTGSGKTYTMTGPRELTEKSQGVNYRALSDLFLIAEQRKDIFRYDVAVQMLEIYNEQVRDLLVTDGSNRRLEIRNSSQTG 556 (1009)
Q Consensus 477 qTGSGKTyTM~G~~~~~~~~~GIipRal~dLF~~~~~~~~~~~y~V~vS~lEIYnE~V~DLL~~~~~~~~L~Ire~~~~g 556 (1009)
||||||||||-+.........|||||++.+||..+..... +.|.|.|+|+|||+|.|+|||.++.....+.+++ +.++
T Consensus 74 QtgsgkTytmgt~~~~~~~~~Gvipr~v~~~f~~i~~~~~-~~f~i~vs~vely~e~v~dl~~~~~~~~~i~~~e-~~g~ 151 (913)
T KOG0244|consen 74 QTGSGKTYTMGTNDAPAQDTVGVIPRAVSTLFTRIGKTES-FVFRITVSFVELYNEEVLDLLKPSRLKANIKLRE-PKGE 151 (913)
T ss_pred ccCCCceeecccccccccccCCcCcchHHHHHHHHHhhhc-cceeeeeeeeeccchhhhhhcChhhhhhceeccc-cCCc
Confidence 9999999999886443334469999999999999987665 7899999999999999999998766666677888 7788
Q ss_pred ccCCCCeEEEeCCHHHHHHHHHhhhcccccccccccCCCCCCceEEEEEEeeee-cCCCceEEEEEEEEeccCCccccCC
Q 001820 557 LNVPDASLIPVSSTADVINLMNLGQKNRAVGATALNDRSSRSHSCLTVHVQGKD-LTSGTMYRGCMHLVDLAGSERVNKS 635 (1009)
Q Consensus 557 ~~V~glt~v~V~S~eev~~lL~~G~~nR~vasT~~N~~SSRSH~IftI~V~~~~-~~~~~~~~s~L~LVDLAGSER~~~s 635 (1009)
+.+.|++++.|.+..++...|..|.-.|++++|+||..|||||+||||.+++.. .......+++|||||||||||.+++
T Consensus 152 it~~glte~tv~~~~q~~~~L~~g~~~RtvasTnMN~qssRshAifti~lkq~kk~~~~s~~~sKlhlVDLAGSER~kkT 231 (913)
T KOG0244|consen 152 ITIRGLTEKTVRMKLQLLSRLEKGSLERTVASTNMNAQSSRSHAIFTITLKQRKKLSKRSSFCSKLHLVDLAGSERVKKT 231 (913)
T ss_pred eEEEeehHHHHHHHHHHHHHHHhchHHHHHHHHhcchhhhhhhHHHHHHHHHHHHhhccchhhhhhheeecccccccccc
Confidence 999999999999999999999999999999999999999999999999998743 3344567899999999999999999
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHHHHHhcCCC--CCCCCCchhhHhhhhhcCCCceeeEEEecCCCCCcHHHHHHHHHHH
Q 001820 636 EVTGDRLKEAQHINRSLSALGDVIASLAQKNP--HVPYRNSKLTQLLQDSLGGQAKTLMFVHISPEPDAVGETISTLKFA 713 (1009)
Q Consensus 636 ~~~G~rlkEa~~INkSLsaLg~VI~ALa~k~~--hIPYRdSKLT~LLqdsLGGnskT~mI~~ISP~~~~~~ETlsTLrFA 713 (1009)
+++|+|++|+.+||.+|++||+||+||..... |||||+||||+||||+||||+.|+||+||||+..+++||++||+||
T Consensus 232 ~a~gdrlKEgInIN~gLL~LgnVIsaLg~~kk~~~vpyRdSkltrlLQdslgGns~tlmiaCiSpadsn~~EtlnTl~ya 311 (913)
T KOG0244|consen 232 KAEGDRLKEGININGGLLALGNVISALGEAKKGGEVPYRDSKLTRLLQDSLGGNSDTLMIACISPADSNAQETLNTLRYA 311 (913)
T ss_pred ccchhhhhhccCcchHHHHHHHHHHHHHhhhcCCcccchHHHHHHHHHHHhcCCcceeeeeecChhhhhhhhHHHHHHHh
Confidence 99999999999999999999999999987554 9999999999999999999999999999999999999999999999
Q ss_pred HHhhccccCcccccCCh--HHHHHHHHHHHHHHHHHHhhh
Q 001820 714 ERVATVELGAARVNKDS--SDVKELKEQIASLKAALARKE 751 (1009)
Q Consensus 714 ~Rak~I~~~~~~vn~~~--~~i~~L~eeI~~Lk~~L~~~~ 751 (1009)
.|++.|++. +.+|.++ ..+..|+.||+.|+.+|....
T Consensus 312 ~Rak~iknk-~vvN~d~~~~~~~~lK~ql~~l~~ell~~~ 350 (913)
T KOG0244|consen 312 DRAKQIKNK-PVVNQDPKSFEMLKLKAQLEPLQVELLSKA 350 (913)
T ss_pred hHHHHhccc-ccccccHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 999999975 4566665 468899999999999998886
No 28
>COG5059 KIP1 Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=3.3e-59 Score=553.82 Aligned_cols=346 Identities=40% Similarity=0.624 Sum_probs=297.3
Q ss_pred cCCCeEEEEEeCCCCCCCCCCCcceEeecCC-eEEEeCCCCCCCCceeEEeceeeCCCCChHhHHhh-hHHHHHHHhcCC
Q 001820 391 LKGSIRVYCRVRPFLSGQSNYLSTVDHIEEG-NITINTPSKHGKGWKSFSFNKVYGPSATQAEVFSD-MQPLIRSVLDGY 468 (1009)
Q Consensus 391 lkGnIrV~~RVRP~~~~E~~~~~~v~~~~~~-~i~v~~p~~~gk~~k~F~FD~VF~~~atQeeVF~~-v~pLV~svLdG~ 468 (1009)
.-.+++++++..|-..++ .+....+. .+.+.. .....|.||+||++.++|++||+. +.|+++++++||
T Consensus 20 ~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~-----~~~~~~~fdkvf~~~~~q~~v~e~~~~~l~~~~l~g~ 89 (568)
T COG5059 20 SVSDIKSTIRIIPGELGE-----RLINTSKKSHVSLEK-----SKEGTYAFDKVFGPSATQEDVYEETIKPLIDSLLLGY 89 (568)
T ss_pred eecCceEEEeecCCCcch-----heeeccccccccccc-----ccceEEEEeeccCCCCcHHHHHHHhhhhHHHHHHhcc
Confidence 346888898888864442 11112111 111111 015789999999999999999998 699999999999
Q ss_pred ceeEEeecccCCCCceeecCCCCCCccccchhhHHHHHHHHHHHHhccceeEEEEEEEEEEecceeeecccCCCCCcccc
Q 001820 469 NVCIFAYGQTGSGKTYTMTGPRELTEKSQGVNYRALSDLFLIAEQRKDIFRYDVAVQMLEIYNEQVRDLLVTDGSNRRLE 548 (1009)
Q Consensus 469 N~~IfAYGqTGSGKTyTM~G~~~~~~~~~GIipRal~dLF~~~~~~~~~~~y~V~vS~lEIYnE~V~DLL~~~~~~~~L~ 548 (1009)
|+||||||||||||||||.| ....+||||+++.+||..++.......|.|.+||+|||||+++|||.+.... +.
T Consensus 90 N~TvfayGqTgsgKtyt~~G----~~~~~Gii~~~l~~lf~~l~~~~~~~~~~v~is~lEiYnEk~~DLl~~~~~~--~~ 163 (568)
T COG5059 90 NCTVFAYGQTGSGKTYTMSG----TEEEPGIIPLSLKELFSKLEDLSMTKDFAVSISYLEIYNEKIYDLLSPNEES--LN 163 (568)
T ss_pred cceEEEEcccCCCceeEeec----CccccchHHHHHHHHHHHHHhcccCcceeeEeehhHHHhhHHHhhccCcccc--cc
Confidence 99999999999999999999 4468999999999999999888767789999999999999999999766433 67
Q ss_pred cccCCCCCccCCCCeEEEeCCHHHHHHHHHhhhcccccccccccCCCCCCceEEEEEEeeeecCCCceEEEEEEEEeccC
Q 001820 549 IRNSSQTGLNVPDASLIPVSSTADVINLMNLGQKNRAVGATALNDRSSRSHSCLTVHVQGKDLTSGTMYRGCMHLVDLAG 628 (1009)
Q Consensus 549 Ire~~~~g~~V~glt~v~V~S~eev~~lL~~G~~nR~vasT~~N~~SSRSH~IftI~V~~~~~~~~~~~~s~L~LVDLAG 628 (1009)
++++...++.|.+++++.|.+.+|++.+|..|..+|.++.|.+|..|||||+||++++.+.+...+....++|+||||||
T Consensus 164 ~~~~~~~~v~v~~l~~~~~~s~ee~l~~l~~~~~nr~~~~te~n~~ssRshsi~~i~~~~~~~~~~~~~~~~l~lvDLag 243 (568)
T COG5059 164 IREDSLLGVKVAGLTEKHVSSKEEILDLLRKGEKNRTTASTEINDESSRSHSIFQIELASKNKVSGTSETSKLSLVDLAG 243 (568)
T ss_pred ccccCCCceEeecceEEecCChHHHHHHHHHhhhhcccccchhccccccceEEEEEEEEEeccCccceecceEEEEeecc
Confidence 88999999999999999999999999999999999999999999999999999999999998777777778999999999
Q ss_pred CccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHhc--CCCCCCCCCchhhHhhhhhcCCCceeeEEEecCCCCCcHHHH
Q 001820 629 SERVNKSEVTGDRLKEAQHINRSLSALGDVIASLAQ--KNPHVPYRNSKLTQLLQDSLGGQAKTLMFVHISPEPDAVGET 706 (1009)
Q Consensus 629 SER~~~s~~~G~rlkEa~~INkSLsaLg~VI~ALa~--k~~hIPYRdSKLT~LLqdsLGGnskT~mI~~ISP~~~~~~ET 706 (1009)
||++..++..+.|++|+..||+||.+||+||.+|.. +..|||||+||||||||++|||+++|+|||||+|...+++||
T Consensus 244 SE~~~~~~~~~~r~~E~~~iN~sLl~Lg~vI~~L~~~~~~~~ipyReskLTRlLq~sLgG~~~~~~i~~Isp~~~~~~et 323 (568)
T COG5059 244 SERAARTGNRGTRLKEGASINKSLLTLGNVINALGDKKKSGHIPYRESKLTRLLQDSLGGNCNTRVICTISPSSNSFEET 323 (568)
T ss_pred ccccchhhcccchhhhhhhhHhhHHHHHHHHHHHhccccCCccchhhhHHHHHHHHhcCCCccEEEEEEEcCCCCchHHH
Confidence 999999999999999999999999999999999997 788999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhccccCccccc---CChHHHHHHHHHHHHHHHHHHhhhcC
Q 001820 707 ISTLKFAERVATVELGAARVN---KDSSDVKELKEQIASLKAALARKEGE 753 (1009)
Q Consensus 707 lsTLrFA~Rak~I~~~~~~vn---~~~~~i~~L~eeI~~Lk~~L~~~~~e 753 (1009)
++||+||.|++.|++. +..+ .-+..+.+++.++...+.........
T Consensus 324 ~~tL~~a~rak~I~~~-~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 372 (568)
T COG5059 324 INTLKFASRAKSIKNK-IQVNSSSDSSREIEEIKFDLSEDRSEIEILVFR 372 (568)
T ss_pred HHHHHHHHHHhhcCCc-ccccCcCcchHHHHHHHhhhhhhhhhhhhHHHH
Confidence 9999999999999854 3343 23445666666666666555444433
No 29
>cd01363 Motor_domain Myosin and Kinesin motor domain. These ATPases belong to the P-loop NTPase family and provide the driving force in myosin and kinesin mediated processes.
Probab=100.00 E-value=2.6e-49 Score=409.25 Aligned_cols=176 Identities=58% Similarity=0.922 Sum_probs=167.5
Q ss_pred HHhhhHHHHHHHhcCCceeEEeecccCCCCceeecCCCCCCccccchhhHHHHHHHHHHHHhccceeEEEEEEEEEEecc
Q 001820 453 VFSDMQPLIRSVLDGYNVCIFAYGQTGSGKTYTMTGPRELTEKSQGVNYRALSDLFLIAEQRKDIFRYDVAVQMLEIYNE 532 (1009)
Q Consensus 453 VF~~v~pLV~svLdG~N~~IfAYGqTGSGKTyTM~G~~~~~~~~~GIipRal~dLF~~~~~~~~~~~y~V~vS~lEIYnE 532 (1009)
||+.+.|+|+.+++|||+||||||||||||||||+|+. .++||+||++++
T Consensus 8 vf~~~~~~v~~~~~G~n~~i~~yG~tGsGKT~Tm~G~~----~~~Giip~~~~~-------------------------- 57 (186)
T cd01363 8 VFRDVGPLLQSALDGYNVCIFAYGQTGSGKTYTMEGKR----EGAGIIPRTVTD-------------------------- 57 (186)
T ss_pred HHHHHHHHHHHHhCCcceeEEEECCCCCcceEecCCCC----CCCCcchHHHHH--------------------------
Confidence 99997799999999999999999999999999999954 578999999887
Q ss_pred eeeecccCCCCCcccccccCCCCCccCCCCeEEEeCCHHHHHHHHHhhhcccccccccccCCCCCCceEEEEEEeeeecC
Q 001820 533 QVRDLLVTDGSNRRLEIRNSSQTGLNVPDASLIPVSSTADVINLMNLGQKNRAVGATALNDRSSRSHSCLTVHVQGKDLT 612 (1009)
Q Consensus 533 ~V~DLL~~~~~~~~L~Ire~~~~g~~V~glt~v~V~S~eev~~lL~~G~~nR~vasT~~N~~SSRSH~IftI~V~~~~~~ 612 (1009)
+++++..|.++|++++|.+|+.|||||+||+|+|.+.+..
T Consensus 58 ----------------------------------------~~~ll~~g~~~R~~~~t~~N~~SSRsH~i~~i~v~~~~~~ 97 (186)
T cd01363 58 ----------------------------------------VIDLMDKGNANRTTAATAMNEHSSRSHSVFRIHFGGKNAL 97 (186)
T ss_pred ----------------------------------------HHHHHhhccccccccccCCCCccCcccEEEEEEEEEeecC
Confidence 7889999999999999999999999999999999987765
Q ss_pred C---CceEEEEEEEEeccCCccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCchhhHhhhhhcCCCce
Q 001820 613 S---GTMYRGCMHLVDLAGSERVNKSEVTGDRLKEAQHINRSLSALGDVIASLAQKNPHVPYRNSKLTQLLQDSLGGQAK 689 (1009)
Q Consensus 613 ~---~~~~~s~L~LVDLAGSER~~~s~~~G~rlkEa~~INkSLsaLg~VI~ALa~k~~hIPYRdSKLT~LLqdsLGGnsk 689 (1009)
. +....++|+|||||||||..+++..+++++|+.+||+||++|++||.+|++++.|||||+||||+||||+|||||+
T Consensus 98 ~~~~~~~~~s~l~lVDLAGsE~~~~~~~~~~~~~e~~~in~sl~~L~~~i~~l~~~~~~vpyr~SkLT~lL~~~L~g~~~ 177 (186)
T cd01363 98 ASATEQPKVGKINLVDLAGSERIDFSGAEGSRLTETANINKSLSTLGNVISALAERDSHVPYRESKLTRLLQDSLGGNSR 177 (186)
T ss_pred CCCccceeeeeEEEEEccccccccccCCchhhHHHHHHHhhHHHHHHHHHHHHhcCCCCCCCcccHHHHHHHHhcCCCCe
Confidence 4 5677899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEEEecCC
Q 001820 690 TLMFVHISP 698 (1009)
Q Consensus 690 T~mI~~ISP 698 (1009)
|+||+||||
T Consensus 178 t~~i~~vsP 186 (186)
T cd01363 178 TLMVACISP 186 (186)
T ss_pred EEEEEEeCc
Confidence 999999998
No 30
>KOG2046 consensus Calponin [Cytoskeleton]
Probab=99.91 E-value=1.5e-24 Score=221.85 Aligned_cols=138 Identities=30% Similarity=0.401 Sum_probs=116.1
Q ss_pred hcCCCCCCChhHHHHHHH-HHhHHHHHHHHHHhhhhhhcCCCCCCCChHHHHHHcccchHHHHHHHhhcCCCcCceecCC
Q 001820 22 HGNRPRDLDLESRKAEEA-ASRRYEAAGWLRKMVGVVAARDLPAEPSEEEFRLGLRSGIILCNVINKVQPGAVPKVVESP 100 (1009)
Q Consensus 22 ~~~r~~~~~la~r~a~~~-a~r~~ea~~WL~~~lg~~~~~~lp~~~~ee~f~~~LrDGvvLCkL~N~l~PGsV~Ki~~~~ 100 (1009)
|++|.+.+||+....++. .++..+++.||+.||..++... .+...+|..+|+||+|||+|+|+|+||++++++++.
T Consensus 1 ~~n~~~~~gl~~~v~~k~~~k~~~~~~~el~~WI~~~~~~~---~~~~~~f~~~LKDG~iLCkl~N~l~p~~~~~~~~s~ 77 (193)
T KOG2046|consen 1 MANRGPSYGLSREVQQKIESKYDDELEKELREWIENVVLTE---LPARGDFQDLLKDGVILCKLINKLYPGVVKKINESK 77 (193)
T ss_pred CCCCCCccchHHHHHHHhhcccCHHHHHHHHHHHHHhhccC---CCcccCHHHHHcchHHHHHHHHHhCcCccccccccc
Confidence 689999999976665554 5788888888888887653222 234568999999999999999999999999888655
Q ss_pred CccccCCccccchhhHHHHHHHHHHHHHhcCCCC---ccCCchhcCCChhHHHHHHHHHHhcccccccCCCCcccc
Q 001820 101 DTVLVPDGAALSAYQYFENVRNFLVAVQEMGLPT---FEASDLEQGGKSARVVNCVLALKSYGEWKQTGGNGVWKF 173 (1009)
Q Consensus 101 ~~~~~~~g~~~~~f~~~ENI~~FL~ac~~lGvp~---Fet~DL~egkn~~kVv~cL~aL~~~~e~k~~g~~g~~k~ 173 (1009)
++|.|||||++|+.||+.+||+. |+++||||++|+.+|+.||++|++++..+...+...|..
T Consensus 78 -----------~~f~qmEnIs~Fi~a~~~ygv~~~d~FqtvDLfE~kd~~~V~vtL~aLa~~a~~~~~~~~~~~g~ 142 (193)
T KOG2046|consen 78 -----------MAFVQMENISNFIKAAKKYGVPEVDLFQTVDLFEGKDMAQVQVTLLALARKAQKKGLFSGPGIGP 142 (193)
T ss_pred -----------ccHHHHHHHHHHHHHHHhcCCChhhcccccccccCCCHHHHHHHHHHHHHHHhhccccCCCCcCC
Confidence 79999999999999999999994 999999999999999999999999999887554444544
No 31
>COG5199 SCP1 Calponin [Cytoskeleton]
Probab=99.72 E-value=1.1e-17 Score=163.56 Aligned_cols=109 Identities=21% Similarity=0.444 Sum_probs=95.6
Q ss_pred HhHHHHHHHHHHhhhhhhcCCCCCCCChHHHHHHcccchHHHHHHHhhcCCCcCceecCCCccccCCccccchhhHHHHH
Q 001820 41 SRRYEAAGWLRKMVGVVAARDLPAEPSEEEFRLGLRSGIILCNVINKVQPGAVPKVVESPDTVLVPDGAALSAYQYFENV 120 (1009)
Q Consensus 41 ~r~~ea~~WL~~~lg~~~~~~lp~~~~ee~f~~~LrDGvvLCkL~N~l~PGsV~Ki~~~~~~~~~~~g~~~~~f~~~ENI 120 (1009)
+...++..||++.++..+.+ ..+|.+.|+|||+||+++|...|+-|+ ..++. ++|.+||||
T Consensus 13 ~~~kev~~Wie~~l~~k~~p-------pgdll~~lkdGv~lCril~ea~~~~I~-yKeSk-----------mpFVQmenI 73 (178)
T COG5199 13 KQQKEVTLWIETVLGEKFEP-------PGDLLSLLKDGVRLCRILNEASPLDIK-YKESK-----------MPFVQMENI 73 (178)
T ss_pred HHHHHHHHHHHHHHHhhhCC-------cccHHHHHhcchHHHHHHhhcCcccce-ecccC-----------CceeeHHHH
Confidence 45668999999999886533 246999999999999999999999853 44554 799999999
Q ss_pred HHHHHHHHhcCCCC---ccCCchhcCCChhHHHHHHHHHHhcccccccCCC
Q 001820 121 RNFLVAVQEMGLPT---FEASDLEQGGKSARVVNCVLALKSYGEWKQTGGN 168 (1009)
Q Consensus 121 ~~FL~ac~~lGvp~---Fet~DL~egkn~~kVv~cL~aL~~~~e~k~~g~~ 168 (1009)
..||.+.+.++||. |+|+||||.+|..+|+.||++|++|++.+-++..
T Consensus 74 s~Fin~~~k~~vpe~elFQT~DLFE~kd~~qV~~~l~slSRya~K~~~~~~ 124 (178)
T COG5199 74 SSFINGLKKLRVPEYELFQTNDLFEAKDLRQVVICLYSLSRYAQKERMFSG 124 (178)
T ss_pred HHHHHHHHHhCCCHHHHHHhhhHHhhcCHHHHHHHHHHHHHHHHHhcCCCC
Confidence 99999999999994 9999999999999999999999999999887643
No 32
>cd00014 CH Calponin homology domain; actin-binding domain which may be present as a single copy or in tandem repeats (which increases binding affinity). The CH domain is found in cytoskeletal and signal transduction proteins, including actin-binding proteins like spectrin, alpha-actinin, dystrophin, utrophin, and fimbrin, proteins essential for regulation of cell shape (cortexillins), and signaling proteins (Vav).
Probab=99.58 E-value=2.7e-15 Score=140.52 Aligned_cols=103 Identities=28% Similarity=0.536 Sum_probs=89.0
Q ss_pred hHHHHHHHHHHhhhhhhcCCCCCCCChHHHHHHcccchHHHHHHHhhcCCCcCceecCCCccccCCccccchhhHHHHHH
Q 001820 42 RRYEAAGWLRKMVGVVAARDLPAEPSEEEFRLGLRSGIILCNVINKVQPGAVPKVVESPDTVLVPDGAALSAYQYFENVR 121 (1009)
Q Consensus 42 r~~ea~~WL~~~lg~~~~~~lp~~~~ee~f~~~LrDGvvLCkL~N~l~PGsV~Ki~~~~~~~~~~~g~~~~~f~~~ENI~ 121 (1009)
.+.++.+|++..++... + +...+|.+.|+||++||+|+|.+.|+.+++....+ ...|++++||.
T Consensus 2 ~~~~l~~Win~~l~~~~----~--~~v~~~~~~l~dG~~L~~Ll~~~~p~~~~~~~~~~----------~~~~~~~~Ni~ 65 (107)
T cd00014 2 QKEELLRWINKVLGEYG----P--VTINNFSTDLKDGIALCKLLNSLSPDLIDKKKINP----------LSRFKRLENIN 65 (107)
T ss_pred hHHHHHHHHHHHhccCC----C--ccHHHHHHHHhchHHHHHHHHHHCccccccccccc----------cchhhHHHHHH
Confidence 46788999999987522 1 35789999999999999999999999997765422 35899999999
Q ss_pred HHHHHHHhcCCCC--ccCCchhcCCChhHHHHHHHHHHhcc
Q 001820 122 NFLVAVQEMGLPT--FEASDLEQGGKSARVVNCVLALKSYG 160 (1009)
Q Consensus 122 ~FL~ac~~lGvp~--Fet~DL~egkn~~kVv~cL~aL~~~~ 160 (1009)
.||.+|+++|+|. |++.||++.+|..+|+.||.+|.+++
T Consensus 66 ~~l~~~~~~gi~~~~~~~~Dl~~~~n~~~vl~~l~~l~~~~ 106 (107)
T cd00014 66 LALNFAEKLGVPVVNFDAEDLVEDGDEKLVLGLLWSLIRKF 106 (107)
T ss_pred HHHHHHHHcCCceeccCHHHHhhCCCceeeHHHHHHHHHhh
Confidence 9999999999995 99999999999999999999998764
No 33
>COG5261 IQG1 Protein involved in regulation of cellular morphogenesis/cytokinesis [Cell division and chromosome partitioning / Signal transduction mechanisms]
Probab=99.50 E-value=2.8e-14 Score=168.80 Aligned_cols=118 Identities=26% Similarity=0.467 Sum_probs=104.6
Q ss_pred ChhHHHHHHHHHhHHHHHHHHHHhhhhhhcCCCCCCCChHHHHHHcccchHHHHHHHhhcCCCcCceecCCCccccCCcc
Q 001820 30 DLESRKAEEAASRRYEAAGWLRKMVGVVAARDLPAEPSEEEFRLGLRSGIILCNVINKVQPGAVPKVVESPDTVLVPDGA 109 (1009)
Q Consensus 30 ~la~r~a~~~a~r~~ea~~WL~~~lg~~~~~~lp~~~~ee~f~~~LrDGvvLCkL~N~l~PGsV~Ki~~~~~~~~~~~g~ 109 (1009)
+-...+|.+..+|-.||+.||++++++ .+| ++.|.+.|||||+|.+|..+++|..+.+|....
T Consensus 33 ~r~~lraYeyLCRv~EaK~WIee~~~~----~l~----~~~fe~slRnGV~La~l~q~f~pd~~~~iF~~~--------- 95 (1054)
T COG5261 33 NRSALRAYEYLCRVSEAKIWIEEVIEE----ALP----ELCFEDSLRNGVFLAKLTQRFNPDLTTVIFPAD--------- 95 (1054)
T ss_pred hhHHHHHHHHHHhHHHHHHHHHHHhcc----CCc----hhhHHHHHhccchHHHHHHHhCCCceeEeeecc---------
Confidence 334566777789999999999999886 222 778999999999999999999999999987764
Q ss_pred ccchhhHHHHHHHHHHHHHhcCCCC---ccCCchhcCCChhHHHHHHHHHHhccccccc
Q 001820 110 ALSAYQYFENVRNFLVAVQEMGLPT---FEASDLEQGGKSARVVNCVLALKSYGEWKQT 165 (1009)
Q Consensus 110 ~~~~f~~~ENI~~FL~ac~~lGvp~---Fet~DL~egkn~~kVv~cL~aL~~~~e~k~~ 165 (1009)
..+|++.+||+.||...+.+|||. ||.-||||+||++||+.||+||..+--|++-
T Consensus 96 -~LQfrHtdNIN~Fld~i~~vGlPe~FhFEl~DlYekKN~pkViyciHaL~~~ls~~g~ 153 (1054)
T COG5261 96 -KLQFRHTDNINAFLDLIEHVGLPESFHFELQDLYEKKNIPKVIYCIHALISMLSWPGK 153 (1054)
T ss_pred -cceeeccccHHHHHhHhhhcCCcceeeeehHhhhccCCcchhHHHHHHHHHHhcCCCC
Confidence 269999999999999999999996 9999999999999999999999999888763
No 34
>smart00033 CH Calponin homology domain. Actin binding domains present in duplicate at the N-termini of spectrin-like proteins (including dystrophin, alpha-actinin). These domains cross-link actin filaments into bundles and networks. A calponin homology domain is predicted in yeasst Cdc24p.
Probab=99.46 E-value=9.6e-14 Score=128.84 Aligned_cols=99 Identities=25% Similarity=0.463 Sum_probs=82.9
Q ss_pred HHHHHHHHHHhhhhhhcCCCCCCCChHHHHHHcccchHHHHHHHhhcCCCcCceecCCCccccCCccccchhhHHHHHHH
Q 001820 43 RYEAAGWLRKMVGVVAARDLPAEPSEEEFRLGLRSGIILCNVINKVQPGAVPKVVESPDTVLVPDGAALSAYQYFENVRN 122 (1009)
Q Consensus 43 ~~ea~~WL~~~lg~~~~~~lp~~~~ee~f~~~LrDGvvLCkL~N~l~PGsV~Ki~~~~~~~~~~~g~~~~~f~~~ENI~~ 122 (1009)
+.++.+|++..++... ....++|...|+||++||+|+|.+.|+.+++....+ +...|++++||..
T Consensus 2 ~~~l~~Win~~l~~~~------~~~v~~~~~~l~dG~~L~~L~~~l~p~~i~~~~~~~---------~~~~~~~~~Ni~~ 66 (103)
T smart00033 2 EKTLLRWVNSLLAEYG------KPPVTNFSSDLSDGVALCKLLNSLSPGSVDKKKVNA---------SLSRFKKIENINL 66 (103)
T ss_pred hHHHHHHHHHHcccCC------CCcHHHHHHHHccHHHHHHHHHHHCCCcCChhhccc---------cccHHHHHHhHHH
Confidence 5678899998876421 355789999999999999999999999998754432 1258999999999
Q ss_pred HHHHHHhcCCC--CccCCchhcC-CChhHHHHHHHHH
Q 001820 123 FLVAVQEMGLP--TFEASDLEQG-GKSARVVNCVLAL 156 (1009)
Q Consensus 123 FL~ac~~lGvp--~Fet~DL~eg-kn~~kVv~cL~aL 156 (1009)
||.+|+++|.. .|++.||++| +++..|+.||+.+
T Consensus 67 ~l~~~~~~g~~~~~~~~~Dl~~~~k~~~~v~~~l~~~ 103 (103)
T smart00033 67 ALSFAEKLGGKLVLFEPEDLVEGNKLILGVIWTLILL 103 (103)
T ss_pred HHHHHHHcCCeeeccCHHHHhhcchHHHHHHHHHHhC
Confidence 99999999953 5999999999 7999999999864
No 35
>KOG2128 consensus Ras GTPase-activating protein family - IQGAP [Signal transduction mechanisms]
Probab=99.46 E-value=6.4e-14 Score=173.69 Aligned_cols=117 Identities=27% Similarity=0.482 Sum_probs=96.4
Q ss_pred CCChhHHHH----HHHHHhHHHHHHHHHHhhhhhhcCCCCCCCChHHHHHHcccchHHHHHHHhhcCCCcCceecCCCcc
Q 001820 28 DLDLESRKA----EEAASRRYEAAGWLRKMVGVVAARDLPAEPSEEEFRLGLRSGIILCNVINKVQPGAVPKVVESPDTV 103 (1009)
Q Consensus 28 ~~~la~r~a----~~~a~r~~ea~~WL~~~lg~~~~~~lp~~~~ee~f~~~LrDGvvLCkL~N~l~PGsV~Ki~~~~~~~ 103 (1009)
...++.|+. .+..+|-+||+.||+.|+|. ++ ||.-+|.++|||||+|.+|.|.+.|..-.++....+
T Consensus 25 ~~~~~~rr~~~vaYeyLCr~eE~k~W~e~cl~e----dL---~pttele~~LRNGV~LAkL~~~f~PD~~~~~~~~~~-- 95 (1401)
T KOG2128|consen 25 AEEMDERREQNVAYEYLCRVEEAKRWIEECLGE----DL---PPTTELEEGLRNGVYLAKLGQFFAPDLEQTIYKAND-- 95 (1401)
T ss_pred HHHHHHHHHHhHHHHHHHhHHHHHHHHHHHhcc----cC---CCchHHHHHhhhhhHHHHHHhhcCCcceeeeeecCC--
Confidence 334455443 34458888999999999987 34 455689999999999999999999976655555442
Q ss_pred ccCCccccchhhHHHHHHHHHHHHHhcCCCC---ccCCchhcCCChhHHHHHHHHHHhcccc
Q 001820 104 LVPDGAALSAYQYFENVRNFLVAVQEMGLPT---FEASDLEQGGKSARVVNCVLALKSYGEW 162 (1009)
Q Consensus 104 ~~~~g~~~~~f~~~ENI~~FL~ac~~lGvp~---Fet~DL~egkn~~kVv~cL~aL~~~~e~ 162 (1009)
..|++.+||..||.|++.+|||. ||+.|+|+|||++ |+.||+||..|--.
T Consensus 96 --------~~frHtdNi~q~~~~me~iglP~iF~~E~~Dvy~~kN~p-~i~cihaLs~~l~k 148 (1401)
T KOG2128|consen 96 --------LHFRHTDNINQWLRAMESIGLPEIFYPETTDVYEGKNIP-VIYCIHALSLYLFK 148 (1401)
T ss_pred --------ceeecchhHHHHHHHHhhcCCCcccccchhhhhcCCCCc-eeeHHHHHHHHHhc
Confidence 25999999999999999999996 9999999999999 99999999887654
No 36
>KOG2996 consensus Rho guanine nucleotide exchange factor VAV3 [Signal transduction mechanisms]
Probab=99.45 E-value=9.6e-14 Score=158.71 Aligned_cols=107 Identities=24% Similarity=0.469 Sum_probs=89.5
Q ss_pred HHHHHHHHhhhhhhcCC-CC-CCCChHHHHHHcccchHHHHHHHhhcCCCc--CceecCCCccccCCccccchhhHHHHH
Q 001820 45 EAAGWLRKMVGVVAARD-LP-AEPSEEEFRLGLRSGIILCNVINKVQPGAV--PKVVESPDTVLVPDGAALSAYQYFENV 120 (1009)
Q Consensus 45 ea~~WL~~~lg~~~~~~-lp-~~~~ee~f~~~LrDGvvLCkL~N~l~PGsV--~Ki~~~~~~~~~~~g~~~~~f~~~ENI 120 (1009)
++++||+++ .++.... .. .....-+|+.+|||||+||+|+|.|.|++| ++|+-.| ..++|-|..||
T Consensus 6 qCarWLidc-kVLptnhrvtw~~a~v~dlAq~LRDGvLLCqLlnnL~p~sIdlkeIn~rp---------QmSqFLClkNI 75 (865)
T KOG2996|consen 6 QCARWLIDC-KVLPTNHRVTWDSAQVFDLAQALRDGVLLCQLLNNLVPHSIDLKEINLRP---------QMSQFLCLKNI 75 (865)
T ss_pred HHHHHHhhc-cccCCCcccccCcchHHHHHHHHhhhhHHHHHHhhcCCCcccHHHhhcCC---------CccchhhHhhH
Confidence 689999999 4433221 11 135567999999999999999999999999 6888877 34799999999
Q ss_pred HHHHHHH-HhcCCC---CccCCchhcCCChhHHHHHHHHHHhccc
Q 001820 121 RNFLVAV-QEMGLP---TFEASDLEQGGKSARVVNCVLALKSYGE 161 (1009)
Q Consensus 121 ~~FL~ac-~~lGvp---~Fet~DL~egkn~~kVv~cL~aL~~~~e 161 (1009)
+-||.+| +.|||. .|++.|||+-.+|.||+.+|..|+....
T Consensus 76 rtFl~~C~~~Fglr~seLF~afDLfdv~dFgKVi~tlS~LS~t~i 120 (865)
T KOG2996|consen 76 RTFLMFCCEKFGLRDSELFEAFDLFDVRDFGKVIKTLSRLSHTPI 120 (865)
T ss_pred HHHHHHHHHHhCCchhhhcchhhhhhhhhHHHHHHHHHHhccChH
Confidence 9999999 789998 4999999999999999999999975433
No 37
>PF00307 CH: Calponin homology (CH) domain; InterPro: IPR001715 The calponin homology domain (also known as CH-domain) is a superfamily of actin-binding domains found in both cytoskeletal proteins and signal transduction proteins []. It comprises the following groups of actin-binding domains: Actinin-type (including spectrin, fimbrin, ABP-280) (see IPR001589 from INTERPRO). Calponin-type (see IPR000557 from INTERPRO). A comprehensive review of proteins containing this type of actin-binding domains is given in []. The CH domain is involved in actin binding in some members of the family. However in calponins there is evidence that the CH domain is not involved in its actin binding activity []. Most proteins have two copies of the CH domain, however some proteins such as calponin and the human vav proto-oncogene (P15498 from SWISSPROT) have only a single copy. The structure of an example CH-domain has recently been solved []. This entry represents the calponin-homology (CH) domain, a superfamily of actin-binding domains found in cytoskeletal proteins (contain two CH domain in tandem repeat), in regulatory proteins from muscle, and in signal transduction proteins. This domain has a core structure consisting of a 4-helical bundle. This domain is found in: Calponin, which is involved in the regulation of contractility and organisation of the actin cytoskeleton in smooth muscle cells []. Beta-spectrin, a major component of a submembrane cytoskeletal network connecting actin filaments to integral plasma membrane proteins []. The actin-cross-linking domain of the fimbrin/plastin family of actin filament bundling or cross-linking proteins []. Utrophin,a close homologue of dystrophin []. Dystrophin, the protein found to be defective in Duchenne muscular dystrophy; this protein contains a tandem repeat of two CH domains []. Actin-binding domain of plectin, a large and widely expressed cytolinker protein []. The N-terminal microtubule-binding domain of microtubule-associated protein eb1 (end-binding protein), a member of a conserved family of proteins that localise to the plus-ends of microtubules []. Ras GTPase-activating-like protein rng2, an IQGAP protein that is essential for the assembly of an actomyosin ring during cytokinesis []. Transgelin, which suppresses androgen receptor transactivation []. ; GO: 0005515 protein binding; PDB: 2DK9_A 1WYL_A 1WKU_B 1TJT_A 3FER_A 2WA7_A 2WA5_A 2WA6_A 2R0O_A 1PXY_A ....
Probab=99.35 E-value=2.6e-12 Score=120.38 Aligned_cols=106 Identities=26% Similarity=0.496 Sum_probs=83.1
Q ss_pred HHHHHHHHHHhhhhhhcCCCCCCCChHHHHHHcccchHHHHHHHhhcCCCcCceecCCCccccCCccccchhhHHHHHHH
Q 001820 43 RYEAAGWLRKMVGVVAARDLPAEPSEEEFRLGLRSGIILCNVINKVQPGAVPKVVESPDTVLVPDGAALSAYQYFENVRN 122 (1009)
Q Consensus 43 ~~ea~~WL~~~lg~~~~~~lp~~~~ee~f~~~LrDGvvLCkL~N~l~PGsV~Ki~~~~~~~~~~~g~~~~~f~~~ENI~~ 122 (1009)
+.++.+||+..++.. +.. ....+|.+.|+||++||+|+|.+.|+.++--...|. .. +.|.+++||..
T Consensus 1 e~~ll~Win~~l~~~-~~~----~~v~~~~~~l~dG~~L~~Li~~l~p~~i~~~~~~~~-------~~-~~~~~~~Ni~~ 67 (108)
T PF00307_consen 1 EKELLKWINSHLEKY-GKG----RRVTNFSEDLRDGVVLCKLINKLFPGTIDLKKINPN-------LK-SPFDKLENIEL 67 (108)
T ss_dssp HHHHHHHHHHHHTTS-TTT----STCSSTSGGGTTSHHHHHHHHHHSTTSSSGGGSSTS-------SS-SHHHHHHHHHH
T ss_pred CHHHHHHHHHHcccc-cCC----CCcCcHHHHhcCHHHHHHHHHHHhhccchhhhcccc-------ch-hhhHHHHHHHH
Confidence 457889999998753 212 222368999999999999999999998732222220 01 58999999999
Q ss_pred HHHHHHh-cCCCC-ccCCchhcCCChhHHHHHHHHHHhccc
Q 001820 123 FLVAVQE-MGLPT-FEASDLEQGGKSARVVNCVLALKSYGE 161 (1009)
Q Consensus 123 FL~ac~~-lGvp~-Fet~DL~egkn~~kVv~cL~aL~~~~e 161 (1009)
|+.+|++ +|+|. +++.||++++|...|+.||.+|..++|
T Consensus 68 ~l~~~~~~lg~~~~~~~~dl~~~~~~~~vl~~l~~l~~~~e 108 (108)
T PF00307_consen 68 ALEAAEKKLGIPPLLSPEDLVEKGDEKSVLSFLWQLFRYFE 108 (108)
T ss_dssp HHHHHHHHTTSSCTS-HHHHHSTT-HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCCCCCCHHHHHHCcCHHHHHHHHHHHHHHHC
Confidence 9999988 99996 999999999999999999999987764
No 38
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.31 E-value=2.7e-12 Score=148.67 Aligned_cols=108 Identities=29% Similarity=0.452 Sum_probs=92.8
Q ss_pred HhHHHHHHHHHHhhhhhhcCCCCCCCChHHHHHHcccchHHHHHHHhhcCCCcCceecCCCccccCCccccchhhHHHHH
Q 001820 41 SRRYEAAGWLRKMVGVVAARDLPAEPSEEEFRLGLRSGIILCNVINKVQPGAVPKVVESPDTVLVPDGAALSAYQYFENV 120 (1009)
Q Consensus 41 ~r~~ea~~WL~~~lg~~~~~~lp~~~~ee~f~~~LrDGvvLCkL~N~l~PGsV~Ki~~~~~~~~~~~g~~~~~f~~~ENI 120 (1009)
..+.|++..|++.+..-+.-.+| +||.++|-||||||+|+|.|+|.+|+.|+.+. |....++..+|+.||
T Consensus 572 ~eE~eL~~QLRk~iEtRLk~sLp-----~Dl~aALtDGViLChLaN~lRPRSV~SIHVPS-----PaV~klsmarcrrNV 641 (722)
T KOG0532|consen 572 REEKELMLQLRKLIETRLKVSLP-----EDLAAALTDGVILCHLANHLRPRSVASIHVPS-----PAVPKLSMARCRRNV 641 (722)
T ss_pred hHHHHHHHHHHHHHHHHhcccCc-----hhHHHHhhcchhhHhhhcccCCCCccceecCC-----CccchhHHHHHHHhH
Confidence 44447777777777665544444 67999999999999999999999999998865 456678899999999
Q ss_pred HHHHHHHHhcCCCC---ccCCchhcC--CChhHHHHHHHHHHh
Q 001820 121 RNFLVAVQEMGLPT---FEASDLEQG--GKSARVVNCVLALKS 158 (1009)
Q Consensus 121 ~~FL~ac~~lGvp~---Fet~DL~eg--kn~~kVv~cL~aL~~ 158 (1009)
.+||.||++||||. +...|+..+ .++.+|+.++++++.
T Consensus 642 dnFLeaCRkiGVpEa~lCS~~Dilq~~~r~~rk~~~t~~~~~~ 684 (722)
T KOG0532|consen 642 DNFLEACRKIGVPEADLCSPMDILQKIERNPRKVARTVLTVGK 684 (722)
T ss_pred HHHHHHHHHcCCChHhhcCHHHhhhhhcccchhHHHHHHhhcc
Confidence 99999999999994 999999999 999999999999974
No 39
>COG5059 KIP1 Kinesin-like protein [Cytoskeleton]
Probab=99.03 E-value=2.8e-12 Score=153.97 Aligned_cols=268 Identities=27% Similarity=0.334 Sum_probs=175.0
Q ss_pred HHHhhhhhhhhccCCCeEEEEEeCCCCCCCCCCCcceEeec-----CCeEEEeCCCCCCCCceeEEeceeeCCCCChHhH
Q 001820 379 EENRKLYNQVQDLKGSIRVYCRVRPFLSGQSNYLSTVDHIE-----EGNITINTPSKHGKGWKSFSFNKVYGPSATQAEV 453 (1009)
Q Consensus 379 ~e~r~l~n~~qelkGnIrV~~RVRP~~~~E~~~~~~v~~~~-----~~~i~v~~p~~~gk~~k~F~FD~VF~~~atQeeV 453 (1009)
..+|.|++.++... +++|+|+|+|..........+..... ...+....+.........|.||.+|.+...+..+
T Consensus 292 kLTRlLq~sLgG~~-~~~~i~~Isp~~~~~~et~~tL~~a~rak~I~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 370 (568)
T COG5059 292 KLTRLLQDSLGGNC-NTRVICTISPSSNSFEETINTLKFASRAKSIKNKIQVNSSSDSSREIEEIKFDLSEDRSEIEILV 370 (568)
T ss_pred HHHHHHHHhcCCCc-cEEEEEEEcCCCCchHHHHHHHHHHHHHhhcCCcccccCcCcchHHHHHHHhhhhhhhhhhhhHH
Confidence 35889999999999 99999999998754322111111111 1222222111111245679999999999999999
Q ss_pred HhhhHHHHHHHhcCCceeEEeecccCCCCceeecCCCCCCccccchhhHHHHHHHHHHHHh-ccceeEEEEEEEEEEecc
Q 001820 454 FSDMQPLIRSVLDGYNVCIFAYGQTGSGKTYTMTGPRELTEKSQGVNYRALSDLFLIAEQR-KDIFRYDVAVQMLEIYNE 532 (1009)
Q Consensus 454 F~~v~pLV~svLdG~N~~IfAYGqTGSGKTyTM~G~~~~~~~~~GIipRal~dLF~~~~~~-~~~~~y~V~vS~lEIYnE 532 (1009)
+.....+++..++| +++|+++++|+++||.- ...++..-.+...|...... ...|.|...+.++++|-.
T Consensus 371 ~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 440 (568)
T COG5059 371 FREQSQLSQSSLSG----IFAYMQSLKKETETLKS------RIDLIMKSIISGTFERKKLLKEEGWKYKSTLQFLRIEID 440 (568)
T ss_pred HHHHHhhhhhhhhh----HHHHHhhhhhhhhcccc------hhhhhhhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHH
Confidence 99999999999999 99999999999999954 34466666656667655433 234666666777777722
Q ss_pred eeeecccCCCCCcccc-cccCCCCCccCCCCeEEEeCCHHHHHHHHHhhhcccccccccccCCCCCCceEEEEEEeeeec
Q 001820 533 QVRDLLVTDGSNRRLE-IRNSSQTGLNVPDASLIPVSSTADVINLMNLGQKNRAVGATALNDRSSRSHSCLTVHVQGKDL 611 (1009)
Q Consensus 533 ~V~DLL~~~~~~~~L~-Ire~~~~g~~V~glt~v~V~S~eev~~lL~~G~~nR~vasT~~N~~SSRSH~IftI~V~~~~~ 611 (1009)
...+++.......... ..........+.-++ .......+..... .+...+..+++.+|.+++++|++|+.+..+...
T Consensus 441 ~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~ 518 (568)
T COG5059 441 RLLLLREEELSKKKTKIHKLNKLRHDLSSLLS-SIPEETSDRVESE-KASKLRSSASTKLNLRSSRSHSKFRDHLNGSNS 518 (568)
T ss_pred HHHHHHHHhcCChHHHHHHHHHHHHHHHHhhh-hcchhhhhhhhhh-hhccchhhcccchhhhhcccchhhhhcccchhh
Confidence 2222222111111101 000000000000111 1111122222222 567788899999999999999999988866543
Q ss_pred CCCceEEEEEEEEeccCCccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHh
Q 001820 612 TSGTMYRGCMHLVDLAGSERVNKSEVTGDRLKEAQHINRSLSALGDVIASLA 663 (1009)
Q Consensus 612 ~~~~~~~s~L~LVDLAGSER~~~s~~~G~rlkEa~~INkSLsaLg~VI~ALa 663 (1009)
..+... +++|||||+||. -+...|.++++...+|++|..++++|.++.
T Consensus 519 ~~~~~~---~n~~~~~~~e~~-~s~~~~~~l~~~~~~~k~l~~~~d~~~~~~ 566 (568)
T COG5059 519 STKELS---LNQVDLAGSERK-VSQSVGELLRETQSLNKSLSSLGDVIHALG 566 (568)
T ss_pred hhHHHH---hhhhhccccccc-hhhhhHHHHHhhHhhhhccccchhhhhhcc
Confidence 333222 899999999999 999999999999999999999999998864
No 40
>PF11971 CAMSAP_CH: CAMSAP CH domain; InterPro: IPR022613 This domain is the N-terminal CH domain from calmodulin-regulated spectrin-associated proteins - CAMSAP proteins.
Probab=97.78 E-value=2.8e-05 Score=71.84 Aligned_cols=71 Identities=24% Similarity=0.373 Sum_probs=58.3
Q ss_pred CCCCChHHHHHHcccchHHHHHHHhhcCCCcC--ceecCCCccccCCccccchhhHHHHHHHHHHHHH-hcCCCC--ccC
Q 001820 63 PAEPSEEEFRLGLRSGIILCNVINKVQPGAVP--KVVESPDTVLVPDGAALSAYQYFENVRNFLVAVQ-EMGLPT--FEA 137 (1009)
Q Consensus 63 p~~~~ee~f~~~LrDGvvLCkL~N~l~PGsV~--Ki~~~~~~~~~~~g~~~~~f~~~ENI~~FL~ac~-~lGvp~--Fet 137 (1009)
|..+..++|...|+||++||.|++...|+.|+ .|...+ .++.+.++.|+..|..+|. .||... |++
T Consensus 8 ~~~~~v~dl~~~l~DG~~Lc~Lih~Y~P~~l~~~~I~~~~---------~mS~~~~l~N~~ll~~~c~~~l~~~~~~l~~ 78 (85)
T PF11971_consen 8 PYFPPVEDLTQDLSDGRALCALIHFYCPQLLPLEDICLKT---------TMSQADSLYNLQLLNSFCQSHLGFSCCHLEP 78 (85)
T ss_pred CCCcchhhhhhhhccHHHHHHHHHHhCcceecHhHccccc---------chHHHHhhhhHHHHHHHHHHHcCCCcCcCCH
Confidence 45677889999999999999999999999994 455444 2479999999999999995 588875 777
Q ss_pred Cchhc
Q 001820 138 SDLEQ 142 (1009)
Q Consensus 138 ~DL~e 142 (1009)
.||..
T Consensus 79 edl~~ 83 (85)
T PF11971_consen 79 EDLLY 83 (85)
T ss_pred HHHhc
Confidence 77653
No 41
>KOG0046 consensus Ca2+-binding actin-bundling protein (fimbrin/plastin), EF-Hand protein superfamily [Cytoskeleton]
Probab=97.45 E-value=9e-05 Score=86.25 Aligned_cols=102 Identities=19% Similarity=0.330 Sum_probs=81.2
Q ss_pred HHHHHHHHHHhhhhh--hcCCCCCCCChHHHHHHcccchHHHHHHHhhcCCCcCc--eecCCCccccCCccccchhhHHH
Q 001820 43 RYEAAGWLRKMVGVV--AARDLPAEPSEEEFRLGLRSGIILCNVINKVQPGAVPK--VVESPDTVLVPDGAALSAYQYFE 118 (1009)
Q Consensus 43 ~~ea~~WL~~~lg~~--~~~~lp~~~~ee~f~~~LrDGvvLCkL~N~l~PGsV~K--i~~~~~~~~~~~g~~~~~f~~~E 118 (1009)
+.+-..||...++.- +..-+|.+|...+|.+..+||++||+|+|-=.||+|.. |+. ...+.+|.+.|
T Consensus 121 k~~fv~hIN~~L~~Dpdl~~~lPinp~t~~lf~~vkDGvlLcKlIN~svPdTIDERaiN~---------kk~Lnp~~~~E 191 (627)
T KOG0046|consen 121 KRAFVNHINSYLEGDPDLKHLLPINPNTNDLFDLVKDGVLLCKLINLSVPDTIDERAINT---------KKKLNPFERNE 191 (627)
T ss_pred HHHHHHHHHHHhcCCcchhhcCCCCCchHHHHHHhccceeeehhhcccCCCchhhhhhcc---------CCcCChhhhcc
Confidence 345678999988643 23446889999999999999999999999999999943 332 22467999999
Q ss_pred HHHHHHHHHHhcCCCC--ccCCchhcCCChhHHHHHHH
Q 001820 119 NVRNFLVAVQEMGLPT--FEASDLEQGGKSARVVNCVL 154 (1009)
Q Consensus 119 NI~~FL~ac~~lGvp~--Fet~DL~egkn~~kVv~cL~ 154 (1009)
|...-|.-|+++|+.. .-+.||-||+-- -|+--|.
T Consensus 192 N~~l~lnSAkAiGc~VvNIga~Dl~eGrph-LVLGLiw 228 (627)
T KOG0046|consen 192 NLNLALNSAKAIGCTVVNIGAQDLAEGRPH-LVLGLIW 228 (627)
T ss_pred chhhHHhhcccccceEEecCchhhhcCCce-eeHHHHH
Confidence 9999999999999885 999999999853 3443333
No 42
>PF06395 CDC24: CDC24 Calponin; InterPro: IPR010481 This is a calponin homology domain.
Probab=96.98 E-value=0.0022 Score=59.74 Aligned_cols=81 Identities=25% Similarity=0.328 Sum_probs=62.4
Q ss_pred ChHHHHHHcccchHHHHHHHhhcCCCcCceecCCCccccCCccccchhhHHHHHHHHHHHH-HhcCCCC---ccCCchhc
Q 001820 67 SEEEFRLGLRSGIILCNVINKVQPGAVPKVVESPDTVLVPDGAALSAYQYFENVRNFLVAV-QEMGLPT---FEASDLEQ 142 (1009)
Q Consensus 67 ~ee~f~~~LrDGvvLCkL~N~l~PGsV~Ki~~~~~~~~~~~g~~~~~f~~~ENI~~FL~ac-~~lGvp~---Fet~DL~e 142 (1009)
+...+...+|-|.=||-|.|.++|..-..|.... ....=.|-..|-.|+.|| .++|+|. |..+|||.
T Consensus 2 PVt~LW~~fr~G~PLc~lfNal~p~~~L~v~~~~---------~~~~k~~K~ai~~Fi~ack~~L~~~~~e~FtIsdl~~ 72 (89)
T PF06395_consen 2 PVTQLWKLFRQGYPLCVLFNALQPEEPLPVDPVS---------SDDLKVCKKAIYKFIQACKQELGFPDEELFTISDLYG 72 (89)
T ss_pred cHHHHHHHHhCcCcHHHHHHccCCccCCCCCCCC---------cchHHHHHHHHHHHHHHHHHhcCCCccceeeeecccc
Confidence 4567899999999999999999997544453322 012456778999999999 6799994 99999997
Q ss_pred C--CChhHHHHHHHHH
Q 001820 143 G--GKSARVVNCVLAL 156 (1009)
Q Consensus 143 g--kn~~kVv~cL~aL 156 (1009)
. ..+.||+..+..|
T Consensus 73 ~dT~gfvKVi~~V~~v 88 (89)
T PF06395_consen 73 DDTNGFVKVIKVVNRV 88 (89)
T ss_pred CCCcchhhHHHHHHhh
Confidence 5 5677888877543
No 43
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=93.55 E-value=0.15 Score=60.88 Aligned_cols=95 Identities=20% Similarity=0.284 Sum_probs=59.6
Q ss_pred eeEEeceeeCCCCChHhHHhhhHHHHHHHhcCCceeEEeecccCCCCceeecCCCCCCccccchh----hHHHHHHHHHH
Q 001820 436 KSFSFNKVYGPSATQAEVFSDMQPLIRSVLDGYNVCIFAYGQTGSGKTYTMTGPRELTEKSQGVN----YRALSDLFLIA 511 (1009)
Q Consensus 436 k~F~FD~VF~~~atQeeVF~~v~pLV~svLdG~N~~IfAYGqTGSGKTyTM~G~~~~~~~~~GIi----pRal~dLF~~~ 511 (1009)
..|....-|.|.-+|-+ .|..||+.+-.|...-+ -.|.|||||||||-.--. .-..|-++ --...+||...
T Consensus 3 ~~F~l~s~f~PaGDQP~---AI~~Lv~gi~~g~~~Qt-LLGvTGSGKTfT~AnVI~-~~~rPtLV~AhNKTLAaQLy~Ef 77 (663)
T COG0556 3 KPFKLHSPFKPAGDQPE---AIAELVEGIENGLKHQT-LLGVTGSGKTFTMANVIA-KVQRPTLVLAHNKTLAAQLYSEF 77 (663)
T ss_pred CceEeccCCCCCCCcHH---HHHHHHHHHhcCceeeE-EeeeccCCchhHHHHHHH-HhCCCeEEEecchhHHHHHHHHH
Confidence 35777777888888754 35667777777765544 469999999999943100 00001110 11245677776
Q ss_pred HHhccceeEEEEEEEEEEecceee
Q 001820 512 EQRKDIFRYDVAVQMLEIYNEQVR 535 (1009)
Q Consensus 512 ~~~~~~~~y~V~vS~lEIYnE~V~ 535 (1009)
...-..-.....|||+.-|.-..|
T Consensus 78 k~fFP~NaVEYFVSYYDYYQPEAY 101 (663)
T COG0556 78 KEFFPENAVEYFVSYYDYYQPEAY 101 (663)
T ss_pred HHhCcCcceEEEeeeccccCcccc
Confidence 665555567889999999965543
No 44
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=93.00 E-value=0.16 Score=58.57 Aligned_cols=17 Identities=35% Similarity=0.645 Sum_probs=15.0
Q ss_pred eeEEeecccCCCCceee
Q 001820 470 VCIFAYGQTGSGKTYTM 486 (1009)
Q Consensus 470 ~~IfAYGqTGSGKTyTM 486 (1009)
..|+-||++|+|||++.
T Consensus 157 ~gvLL~GppGtGKT~la 173 (364)
T TIGR01242 157 KGVLLYGPPGTGKTLLA 173 (364)
T ss_pred ceEEEECCCCCCHHHHH
Confidence 45889999999999887
No 45
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=91.62 E-value=0.072 Score=57.39 Aligned_cols=51 Identities=20% Similarity=0.434 Sum_probs=33.3
Q ss_pred eeEEeceeeCCCCChHhHHhhhHHHHHHHhcCCceeEEeecccCCCCceeecC
Q 001820 436 KSFSFNKVYGPSATQAEVFSDMQPLIRSVLDGYNVCIFAYGQTGSGKTYTMTG 488 (1009)
Q Consensus 436 k~F~FD~VF~~~atQeeVF~~v~pLV~svLdG~N~~IfAYGqTGSGKTyTM~G 488 (1009)
..|+||.-+.. ..++.+|..+..+...--..+|. +|-||++|+||||-|.+
T Consensus 3 ~~~tFdnfv~g-~~N~~a~~~~~~ia~~~~~~~~~-l~l~G~~G~GKTHLL~A 53 (219)
T PF00308_consen 3 PKYTFDNFVVG-ESNELAYAAAKAIAENPGERYNP-LFLYGPSGLGKTHLLQA 53 (219)
T ss_dssp TT-SCCCS--T-TTTHHHHHHHHHHHHSTTTSSSE-EEEEESTTSSHHHHHHH
T ss_pred CCCccccCCcC-CcHHHHHHHHHHHHhcCCCCCCc-eEEECCCCCCHHHHHHH
Confidence 36899987643 44677777766665552223444 78899999999998744
No 46
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=90.94 E-value=0.59 Score=54.68 Aligned_cols=18 Identities=33% Similarity=0.593 Sum_probs=15.2
Q ss_pred ceeEEeecccCCCCceee
Q 001820 469 NVCIFAYGQTGSGKTYTM 486 (1009)
Q Consensus 469 N~~IfAYGqTGSGKTyTM 486 (1009)
...|+-||++|+|||+..
T Consensus 165 p~gvLL~GppGtGKT~lA 182 (389)
T PRK03992 165 PKGVLLYGPPGTGKTLLA 182 (389)
T ss_pred CCceEEECCCCCChHHHH
Confidence 346889999999999876
No 47
>KOG0046 consensus Ca2+-binding actin-bundling protein (fimbrin/plastin), EF-Hand protein superfamily [Cytoskeleton]
Probab=89.81 E-value=0.66 Score=55.28 Aligned_cols=84 Identities=25% Similarity=0.468 Sum_probs=62.5
Q ss_pred HHHHHHHhhhhhhcCCCCCCCChHHHHHHcccchHHHHHHHhhcCCCc--CceecCCCccccCCccccchhhHHHHHHHH
Q 001820 46 AAGWLRKMVGVVAARDLPAEPSEEEFRLGLRSGIILCNVINKVQPGAV--PKVVESPDTVLVPDGAALSAYQYFENVRNF 123 (1009)
Q Consensus 46 a~~WL~~~lg~~~~~~lp~~~~ee~f~~~LrDGvvLCkL~N~l~PGsV--~Ki~~~~~~~~~~~g~~~~~f~~~ENI~~F 123 (1009)
..-||..+ |+ .|....+.+-||||.||-.+..+|.||.| ++++.+| ++. .+.|+..||-+.-
T Consensus 393 fr~WmNSl-gv--------~p~vn~~f~Dl~dglVllq~~dki~pg~Vnwk~vnKp~----~~~---~~~~kklENcNya 456 (627)
T KOG0046|consen 393 FRLWMNSL-GV--------NPYVNNLFEDLRDGLVLLQLYDKVSPGSVNWKHVNKPP----SPL---KMPFKKVENCNYA 456 (627)
T ss_pred HHHHHHhc-CC--------cHHHHHHHHhhhhhhHHHHHHHHccCCccchhhccCCC----Ccc---cccHHHhhcchHH
Confidence 34577665 43 46778899999999999999999999999 4555554 111 2468888888777
Q ss_pred HHHHHhcCCCC--ccCCchhcCCC
Q 001820 124 LVAVQEMGLPT--FEASDLEQGGK 145 (1009)
Q Consensus 124 L~ac~~lGvp~--Fet~DL~egkn 145 (1009)
.+--+.++... ..-.|+++|-.
T Consensus 457 v~lGk~~~FSLVgi~G~DI~dGNk 480 (627)
T KOG0046|consen 457 VKLGKQLKFSLVGIAGQDIVDGNK 480 (627)
T ss_pred HHHHhhcceeeeccccccccccch
Confidence 66667777664 88899999843
No 48
>COG5069 SAC6 Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]
Probab=88.01 E-value=0.62 Score=54.93 Aligned_cols=83 Identities=22% Similarity=0.400 Sum_probs=61.4
Q ss_pred hHHHHHHHHHHhhhhhhcCCCCCCCChHHHHHHcccchHHHHHHHhhcCCCc-CceecCCCccccCCccccchhhHHHHH
Q 001820 42 RRYEAAGWLRKMVGVVAARDLPAEPSEEEFRLGLRSGIILCNVINKVQPGAV-PKVVESPDTVLVPDGAALSAYQYFENV 120 (1009)
Q Consensus 42 r~~ea~~WL~~~lg~~~~~~lp~~~~ee~f~~~LrDGvvLCkL~N~l~PGsV-~Ki~~~~~~~~~~~g~~~~~f~~~ENI 120 (1009)
.......|....+|. -+| +....+|...-|||.++|+|+|.-.|..+ +.+..-+ ..+.++..|+++||-
T Consensus 126 ~~~~lllwc~~~t~~----y~p-~vd~~df~rswrdGLaf~aLIh~~rPDtld~n~ld~q-----kknk~~n~~qafe~a 195 (612)
T COG5069 126 KHINLLLWCDEDTGG----YKP-EVDTFDFFRSWRDGLAFSALIHDSRPDTLDPNVLDLQ-----KKNKALNNFQAFENA 195 (612)
T ss_pred hhhhhheeccccccC----cCC-CccHHHHHHHhhhhHHHHHHHhhcCCcccCccccchh-----hcccchhHHHHHHHH
Confidence 334555565555443 344 55667899999999999999999999965 4444422 234556789999999
Q ss_pred HHHHHHHHhcCCCC
Q 001820 121 RNFLVAVQEMGLPT 134 (1009)
Q Consensus 121 ~~FL~ac~~lGvp~ 134 (1009)
..|+.-.+.+|+..
T Consensus 196 ~k~Igi~rli~ved 209 (612)
T COG5069 196 NKVIGIARLIGVED 209 (612)
T ss_pred HHhhchHhhcCcce
Confidence 99999999999875
No 49
>PRK06893 DNA replication initiation factor; Validated
Probab=87.59 E-value=0.35 Score=52.33 Aligned_cols=48 Identities=15% Similarity=0.301 Sum_probs=32.7
Q ss_pred eeEEeceeeCCCCChHhHHhhhHHHHHHHhcCCceeEEeecccCCCCceeecC
Q 001820 436 KSFSFNKVYGPSATQAEVFSDMQPLIRSVLDGYNVCIFAYGQTGSGKTYTMTG 488 (1009)
Q Consensus 436 k~F~FD~VF~~~atQeeVF~~v~pLV~svLdG~N~~IfAYGqTGSGKTyTM~G 488 (1009)
..++||..++... ..-+ ..+.+.+-.++|-.++-||++|+||||.+.+
T Consensus 11 ~~~~fd~f~~~~~-~~~~----~~~~~~~~~~~~~~l~l~G~~G~GKThL~~a 58 (229)
T PRK06893 11 DDETLDNFYADNN-LLLL----DSLRKNFIDLQQPFFYIWGGKSSGKSHLLKA 58 (229)
T ss_pred CcccccccccCCh-HHHH----HHHHHHhhccCCCeEEEECCCCCCHHHHHHH
Confidence 4688999886542 2211 2222333357888899999999999999854
No 50
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=87.27 E-value=0.3 Score=55.16 Aligned_cols=30 Identities=33% Similarity=0.573 Sum_probs=26.9
Q ss_pred HHHHHHHhcCCceeEEeecccCCCCceeec
Q 001820 458 QPLIRSVLDGYNVCIFAYGQTGSGKTYTMT 487 (1009)
Q Consensus 458 ~pLV~svLdG~N~~IfAYGqTGSGKTyTM~ 487 (1009)
-|++..+++--++.|+.-|+||||||+||-
T Consensus 114 P~i~~~~~~~~~GLILVTGpTGSGKSTTlA 143 (353)
T COG2805 114 PPIVRELAESPRGLILVTGPTGSGKSTTLA 143 (353)
T ss_pred CHHHHHHHhCCCceEEEeCCCCCcHHHHHH
Confidence 467788889999999999999999999993
No 51
>PRK06620 hypothetical protein; Validated
Probab=87.11 E-value=0.25 Score=53.16 Aligned_cols=49 Identities=18% Similarity=0.292 Sum_probs=34.5
Q ss_pred eeEEeceeeCCCCChHhHHhhhHHHHHHHhcCCc---eeEEeecccCCCCceeec
Q 001820 436 KSFSFNKVYGPSATQAEVFSDMQPLIRSVLDGYN---VCIFAYGQTGSGKTYTMT 487 (1009)
Q Consensus 436 k~F~FD~VF~~~atQeeVF~~v~pLV~svLdG~N---~~IfAYGqTGSGKTyTM~ 487 (1009)
..|+||..+...+ +...|..+..+.+. -|+| -.++-||++||||||.+.
T Consensus 11 ~~~tfd~Fvvg~~-N~~a~~~~~~~~~~--~~~~~~~~~l~l~Gp~G~GKThLl~ 62 (214)
T PRK06620 11 SKYHPDEFIVSSS-NDQAYNIIKNWQCG--FGVNPYKFTLLIKGPSSSGKTYLTK 62 (214)
T ss_pred CCCCchhhEeccc-HHHHHHHHHHHHHc--cccCCCcceEEEECCCCCCHHHHHH
Confidence 4688988775443 45578776655442 1444 358999999999999985
No 52
>PRK08084 DNA replication initiation factor; Provisional
Probab=87.11 E-value=0.35 Score=52.56 Aligned_cols=48 Identities=15% Similarity=0.369 Sum_probs=33.5
Q ss_pred eeEEeceeeCCCCChHhHHhhhHHHHHHHhcCCceeEEeecccCCCCceeecC
Q 001820 436 KSFSFNKVYGPSATQAEVFSDMQPLIRSVLDGYNVCIFAYGQTGSGKTYTMTG 488 (1009)
Q Consensus 436 k~F~FD~VF~~~atQeeVF~~v~pLV~svLdG~N~~IfAYGqTGSGKTyTM~G 488 (1009)
..|+||..+.. .+..++..+..++. ......++-||++|+||||.+.+
T Consensus 17 ~~~~fd~f~~~--~n~~a~~~l~~~~~---~~~~~~l~l~Gp~G~GKThLl~a 64 (235)
T PRK08084 17 DDETFASFYPG--DNDSLLAALQNALR---QEHSGYIYLWSREGAGRSHLLHA 64 (235)
T ss_pred CcCCccccccC--ccHHHHHHHHHHHh---CCCCCeEEEECCCCCCHHHHHHH
Confidence 45788866644 56667776655543 22234789999999999999954
No 53
>PRK12377 putative replication protein; Provisional
Probab=86.94 E-value=0.41 Score=52.80 Aligned_cols=49 Identities=18% Similarity=0.273 Sum_probs=36.4
Q ss_pred EeceeeCCCCChHhHHhhhHHHHHHHhcCCceeEEeecccCCCCceeecC
Q 001820 439 SFNKVYGPSATQAEVFSDMQPLIRSVLDGYNVCIFAYGQTGSGKTYTMTG 488 (1009)
Q Consensus 439 ~FD~VF~~~atQeeVF~~v~pLV~svLdG~N~~IfAYGqTGSGKTyTM~G 488 (1009)
+||........|..++..+..+++.+..+. ..++-||++|+||||.+.+
T Consensus 72 tFdnf~~~~~~~~~a~~~a~~~a~~~~~~~-~~l~l~G~~GtGKThLa~A 120 (248)
T PRK12377 72 SFANYQVQNDGQRYALSQAKSIADELMTGC-TNFVFSGKPGTGKNHLAAA 120 (248)
T ss_pred CcCCcccCChhHHHHHHHHHHHHHHHHhcC-CeEEEECCCCCCHHHHHHH
Confidence 455544445567778887778888777654 4688899999999999854
No 54
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=85.92 E-value=0.34 Score=59.69 Aligned_cols=52 Identities=19% Similarity=0.355 Sum_probs=37.0
Q ss_pred ceeEEeceeeCCCCChHhHHhhhHHHHHHHhcCCceeEEeecccCCCCceeecC
Q 001820 435 WKSFSFNKVYGPSATQAEVFSDMQPLIRSVLDGYNVCIFAYGQTGSGKTYTMTG 488 (1009)
Q Consensus 435 ~k~F~FD~VF~~~atQeeVF~~v~pLV~svLdG~N~~IfAYGqTGSGKTyTM~G 488 (1009)
...|+||..+-... +..+|..+..++...-.+||. ||-||.+|+||||.+..
T Consensus 282 ~~~~TFDnFvvG~s-N~~A~aaa~avae~~~~~~Np-L~LyG~sGsGKTHLL~A 333 (617)
T PRK14086 282 NPKYTFDTFVIGAS-NRFAHAAAVAVAEAPAKAYNP-LFIYGESGLGKTHLLHA 333 (617)
T ss_pred CCCCCHhhhcCCCc-cHHHHHHHHHHHhCccccCCc-EEEECCCCCCHHHHHHH
Confidence 35689998664333 445666666666554456776 89999999999999854
No 55
>PRK08116 hypothetical protein; Validated
Probab=85.90 E-value=0.41 Score=53.23 Aligned_cols=52 Identities=17% Similarity=0.360 Sum_probs=37.2
Q ss_pred eeEEeceeeCCCCChHhHHhhhHHHHHHHhc--CCceeEEeecccCCCCceeecC
Q 001820 436 KSFSFNKVYGPSATQAEVFSDMQPLIRSVLD--GYNVCIFAYGQTGSGKTYTMTG 488 (1009)
Q Consensus 436 k~F~FD~VF~~~atQeeVF~~v~pLV~svLd--G~N~~IfAYGqTGSGKTyTM~G 488 (1009)
..++||... .+..+...|..+...++.+.. ..+..++-||.+|+||||.+..
T Consensus 80 ~~~tFdnf~-~~~~~~~a~~~a~~y~~~~~~~~~~~~gl~l~G~~GtGKThLa~a 133 (268)
T PRK08116 80 RNSTFENFL-FDKGSEKAYKIARKYVKKFEEMKKENVGLLLWGSVGTGKTYLAAC 133 (268)
T ss_pred Hhcchhccc-CChHHHHHHHHHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHH
Confidence 345666544 355666778777777777654 3456799999999999999843
No 56
>PRK07952 DNA replication protein DnaC; Validated
Probab=85.49 E-value=0.51 Score=51.99 Aligned_cols=50 Identities=16% Similarity=0.214 Sum_probs=35.1
Q ss_pred EEeceeeCCCCChHhHHhhhHHHHHHHhcCCceeEEeecccCCCCceeecC
Q 001820 438 FSFNKVYGPSATQAEVFSDMQPLIRSVLDGYNVCIFAYGQTGSGKTYTMTG 488 (1009)
Q Consensus 438 F~FD~VF~~~atQeeVF~~v~pLV~svLdG~N~~IfAYGqTGSGKTyTM~G 488 (1009)
.+||........|..++..+...++.+..|+ ..++-||.+|+||||.+.+
T Consensus 69 ~tFdnf~~~~~~q~~al~~a~~~~~~~~~~~-~~~~l~G~~GtGKThLa~a 118 (244)
T PRK07952 69 CSFENYRVECEGQMNALSKARQYVEEFDGNI-ASFIFSGKPGTGKNHLAAA 118 (244)
T ss_pred CccccccCCCchHHHHHHHHHHHHHhhccCC-ceEEEECCCCCCHHHHHHH
Confidence 3555443334557778887777777665543 3688999999999999854
No 57
>PRK05642 DNA replication initiation factor; Validated
Probab=85.02 E-value=0.57 Score=50.93 Aligned_cols=51 Identities=16% Similarity=0.303 Sum_probs=31.0
Q ss_pred eeEEeceeeCCCCChHhHHhhhHHHHHHHhcCCceeEEeecccCCCCceeecC
Q 001820 436 KSFSFNKVYGPSATQAEVFSDMQPLIRSVLDGYNVCIFAYGQTGSGKTYTMTG 488 (1009)
Q Consensus 436 k~F~FD~VF~~~atQeeVF~~v~pLV~svLdG~N~~IfAYGqTGSGKTyTM~G 488 (1009)
..|+||.-+.. .+..++..+..+.+..-..-.-.++-||++|+||||-+..
T Consensus 14 ~~~tfdnF~~~--~~~~a~~~~~~~~~~~~~~~~~~l~l~G~~G~GKTHLl~a 64 (234)
T PRK05642 14 DDATFANYYPG--ANAAALGYVERLCEADAGWTESLIYLWGKDGVGRSHLLQA 64 (234)
T ss_pred CcccccccCcC--ChHHHHHHHHHHhhccccCCCCeEEEECCCCCCHHHHHHH
Confidence 45889987733 2344444443333321111134688999999999999854
No 58
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=84.84 E-value=2.2 Score=50.31 Aligned_cols=50 Identities=22% Similarity=0.434 Sum_probs=30.7
Q ss_pred eEEeceeeCCCCChHhHHhhh-HHHHH-HHhc--C--CceeEEeecccCCCCceee
Q 001820 437 SFSFNKVYGPSATQAEVFSDM-QPLIR-SVLD--G--YNVCIFAYGQTGSGKTYTM 486 (1009)
Q Consensus 437 ~F~FD~VF~~~atQeeVF~~v-~pLV~-svLd--G--~N~~IfAYGqTGSGKTyTM 486 (1009)
.++|+.|-+.+..-+++-+.+ .|+.. ..+. | ..-.|+-||++|+|||+..
T Consensus 141 ~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LA 196 (398)
T PTZ00454 141 DVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLA 196 (398)
T ss_pred CCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHH
Confidence 456777766554444454444 34432 2333 2 2346888999999999876
No 59
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=84.35 E-value=0.49 Score=56.34 Aligned_cols=51 Identities=20% Similarity=0.359 Sum_probs=35.6
Q ss_pred ceeEEeceeeCCCCChHhHHhhhHHHHHHHhcCCceeEEeecccCCCCceeecC
Q 001820 435 WKSFSFNKVYGPSATQAEVFSDMQPLIRSVLDGYNVCIFAYGQTGSGKTYTMTG 488 (1009)
Q Consensus 435 ~k~F~FD~VF~~~atQeeVF~~v~pLV~svLdG~N~~IfAYGqTGSGKTyTM~G 488 (1009)
...|+||.-+-. .++...|..+..+... -..||. +|-||++|+||||.|..
T Consensus 99 ~~~~tFdnFv~g-~~n~~a~~~~~~~~~~-~~~~n~-l~lyG~~G~GKTHLl~a 149 (440)
T PRK14088 99 NPDYTFENFVVG-PGNSFAYHAALEVAKN-PGRYNP-LFIYGGVGLGKTHLLQS 149 (440)
T ss_pred CCCCcccccccC-CchHHHHHHHHHHHhC-cCCCCe-EEEEcCCCCcHHHHHHH
Confidence 356899987743 4556677765555443 122665 99999999999999854
No 60
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=84.28 E-value=0.47 Score=56.80 Aligned_cols=31 Identities=32% Similarity=0.355 Sum_probs=27.0
Q ss_pred HHHHHHHhcCCceeEEeecccCCCCceeecC
Q 001820 458 QPLIRSVLDGYNVCIFAYGQTGSGKTYTMTG 488 (1009)
Q Consensus 458 ~pLV~svLdG~N~~IfAYGqTGSGKTyTM~G 488 (1009)
...+..++..-++.|+.-|+||||||.||+.
T Consensus 247 ~~~~~~~~~~p~GliLvTGPTGSGKTTTLY~ 277 (500)
T COG2804 247 LARLLRLLNRPQGLILVTGPTGSGKTTTLYA 277 (500)
T ss_pred HHHHHHHHhCCCeEEEEeCCCCCCHHHHHHH
Confidence 4466778888999999999999999999965
No 61
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=84.08 E-value=0.55 Score=54.98 Aligned_cols=52 Identities=19% Similarity=0.323 Sum_probs=34.3
Q ss_pred ceeEEeceeeCCCCChHhHHhhhHHHHHHHhcCCceeEEeecccCCCCceeecC
Q 001820 435 WKSFSFNKVYGPSATQAEVFSDMQPLIRSVLDGYNVCIFAYGQTGSGKTYTMTG 488 (1009)
Q Consensus 435 ~k~F~FD~VF~~~atQeeVF~~v~pLV~svLdG~N~~IfAYGqTGSGKTyTM~G 488 (1009)
...|+||...- ...+...|..+..+...--..+| .++-||++|+||||.+..
T Consensus 104 ~~~~tfd~fi~-g~~n~~a~~~~~~~~~~~~~~~n-~l~l~G~~G~GKThL~~a 155 (405)
T TIGR00362 104 NPKYTFDNFVV-GKSNRLAHAAALAVAENPGKAYN-PLFIYGGVGLGKTHLLHA 155 (405)
T ss_pred CCCCccccccc-CCcHHHHHHHHHHHHhCcCccCC-eEEEECCCCCcHHHHHHH
Confidence 35789998442 34566677666555554212244 478899999999999843
No 62
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=83.31 E-value=0.81 Score=48.45 Aligned_cols=47 Identities=21% Similarity=0.490 Sum_probs=33.8
Q ss_pred eeEEeceeeCCCCChHhHHhhhHHHHHHHhcCCceeEEeecccCCCCceeec
Q 001820 436 KSFSFNKVYGPSATQAEVFSDMQPLIRSVLDGYNVCIFAYGQTGSGKTYTMT 487 (1009)
Q Consensus 436 k~F~FD~VF~~~atQeeVF~~v~pLV~svLdG~N~~IfAYGqTGSGKTyTM~ 487 (1009)
..++||.... ..+..++..++.++. ......|+-||++|+||||...
T Consensus 10 ~~~~~~~~~~--~~~~~~~~~l~~~~~---~~~~~~lll~G~~G~GKT~la~ 56 (226)
T TIGR03420 10 DDPTFDNFYA--GGNAELLAALRQLAA---GKGDRFLYLWGESGSGKSHLLQ 56 (226)
T ss_pred CchhhcCcCc--CCcHHHHHHHHHHHh---cCCCCeEEEECCCCCCHHHHHH
Confidence 3477877663 255667776655543 4567789999999999999883
No 63
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=82.56 E-value=0.64 Score=55.31 Aligned_cols=52 Identities=19% Similarity=0.323 Sum_probs=34.6
Q ss_pred ceeEEeceeeCCCCChHhHHhhhHHHHHHHhcCCceeEEeecccCCCCceeecC
Q 001820 435 WKSFSFNKVYGPSATQAEVFSDMQPLIRSVLDGYNVCIFAYGQTGSGKTYTMTG 488 (1009)
Q Consensus 435 ~k~F~FD~VF~~~atQeeVF~~v~pLV~svLdG~N~~IfAYGqTGSGKTyTM~G 488 (1009)
...|+||.... ...+...|..+..+.+.--..|| .+|-||++|+||||.+..
T Consensus 116 ~~~~tfd~fv~-g~~n~~a~~~~~~~~~~~~~~~~-~l~l~G~~G~GKThL~~a 167 (450)
T PRK00149 116 NPKYTFDNFVV-GKSNRLAHAAALAVAENPGKAYN-PLFIYGGVGLGKTHLLHA 167 (450)
T ss_pred CCCCccccccc-CCCcHHHHHHHHHHHhCcCccCC-eEEEECCCCCCHHHHHHH
Confidence 35688888443 23556677766555554222344 478899999999999844
No 64
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=82.46 E-value=0.92 Score=48.52 Aligned_cols=48 Identities=17% Similarity=0.360 Sum_probs=32.3
Q ss_pred eeEEeceeeCCCCChHhHHhhhHHHHHHHhcCCceeEEeecccCCCCceeec
Q 001820 436 KSFSFNKVYGPSATQAEVFSDMQPLIRSVLDGYNVCIFAYGQTGSGKTYTMT 487 (1009)
Q Consensus 436 k~F~FD~VF~~~atQeeVF~~v~pLV~svLdG~N~~IfAYGqTGSGKTyTM~ 487 (1009)
..|+||..++. . .+.++..++.++.. .+....++-||++|+||||.+.
T Consensus 13 ~~~~~d~f~~~-~-~~~~~~~l~~~~~~--~~~~~~~~l~G~~G~GKT~La~ 60 (227)
T PRK08903 13 PPPTFDNFVAG-E-NAELVARLRELAAG--PVADRFFYLWGEAGSGRSHLLQ 60 (227)
T ss_pred ChhhhcccccC-C-cHHHHHHHHHHHhc--cCCCCeEEEECCCCCCHHHHHH
Confidence 45889988732 2 33455555555542 2345578999999999999884
No 65
>PRK06835 DNA replication protein DnaC; Validated
Probab=82.25 E-value=0.62 Score=53.49 Aligned_cols=37 Identities=22% Similarity=0.427 Sum_probs=27.5
Q ss_pred HhHHhhhHHHHHHHhcCCceeEEeecccCCCCceeecC
Q 001820 451 AEVFSDMQPLIRSVLDGYNVCIFAYGQTGSGKTYTMTG 488 (1009)
Q Consensus 451 eeVF~~v~pLV~svLdG~N~~IfAYGqTGSGKTyTM~G 488 (1009)
..+++.+...|+.+-.+. -.|+-||++|+||||.+.+
T Consensus 166 ~~~~~~~~~f~~~f~~~~-~~Lll~G~~GtGKThLa~a 202 (329)
T PRK06835 166 EKILEKCKNFIENFDKNN-ENLLFYGNTGTGKTFLSNC 202 (329)
T ss_pred HHHHHHHHHHHHHHhccC-CcEEEECCCCCcHHHHHHH
Confidence 345555566777776554 5699999999999998854
No 66
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=81.65 E-value=0.76 Score=54.93 Aligned_cols=50 Identities=26% Similarity=0.416 Sum_probs=33.6
Q ss_pred eEEeceeeCCCCChHhHHhhhHHHHHHHhcCCceeEEeecccCCCCceeecC
Q 001820 437 SFSFNKVYGPSATQAEVFSDMQPLIRSVLDGYNVCIFAYGQTGSGKTYTMTG 488 (1009)
Q Consensus 437 ~F~FD~VF~~~atQeeVF~~v~pLV~svLdG~N~~IfAYGqTGSGKTyTM~G 488 (1009)
.|+||..+... ++...|..+..++..-=..|| .+|-||.+|+||||.|..
T Consensus 111 ~~tFdnFv~g~-~n~~A~~aa~~~a~~~~~~~n-pl~i~G~~G~GKTHLl~A 160 (450)
T PRK14087 111 ENTFENFVIGS-SNEQAFIAVQTVSKNPGISYN-PLFIYGESGMGKTHLLKA 160 (450)
T ss_pred ccchhcccCCC-cHHHHHHHHHHHHhCcCcccC-ceEEECCCCCcHHHHHHH
Confidence 58999866443 455677665555432111244 488999999999999954
No 67
>PRK09087 hypothetical protein; Validated
Probab=81.38 E-value=0.75 Score=49.91 Aligned_cols=47 Identities=15% Similarity=0.150 Sum_probs=31.8
Q ss_pred eeEEeceeeCCCCChHhHHhhhHHHHHHHhcCCceeEEeecccCCCCceeec
Q 001820 436 KSFSFNKVYGPSATQAEVFSDMQPLIRSVLDGYNVCIFAYGQTGSGKTYTMT 487 (1009)
Q Consensus 436 k~F~FD~VF~~~atQeeVF~~v~pLV~svLdG~N~~IfAYGqTGSGKTyTM~ 487 (1009)
..|+||..+...++ ..+|..+..+ ..-.+-.++-||++||||||.+.
T Consensus 16 ~~~~~~~Fi~~~~N-~~a~~~l~~~----~~~~~~~l~l~G~~GsGKThLl~ 62 (226)
T PRK09087 16 PAYGRDDLLVTESN-RAAVSLVDHW----PNWPSPVVVLAGPVGSGKTHLAS 62 (226)
T ss_pred CCCChhceeecCch-HHHHHHHHhc----ccCCCCeEEEECCCCCCHHHHHH
Confidence 45788887754444 4467644322 22235568999999999999985
No 68
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=80.97 E-value=1.1 Score=51.24 Aligned_cols=39 Identities=28% Similarity=0.537 Sum_probs=27.6
Q ss_pred CChHhHHhhhHHHHHHHhc-CCceeEEeecccCCCCceee
Q 001820 448 ATQAEVFSDMQPLIRSVLD-GYNVCIFAYGQTGSGKTYTM 486 (1009)
Q Consensus 448 atQeeVF~~v~pLV~svLd-G~N~~IfAYGqTGSGKTyTM 486 (1009)
...++-++.+...+..++. +...+++-||++|+|||+++
T Consensus 18 ~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~ 57 (365)
T TIGR02928 18 VHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVT 57 (365)
T ss_pred CCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHH
Confidence 3445555555555555554 45568999999999999987
No 69
>KOG0517 consensus Beta-spectrin [Cytoskeleton]
Probab=80.40 E-value=5.7 Score=53.59 Aligned_cols=81 Identities=20% Similarity=0.332 Sum_probs=61.0
Q ss_pred HHHHHHHHhhhhhhcCCCCCCCChHHHHHHcccchHHHHHHHhhcCCCcCceecCCCccccCCccccchhhHHHHHHHHH
Q 001820 45 EAAGWLRKMVGVVAARDLPAEPSEEEFRLGLRSGIILCNVINKVQPGAVPKVVESPDTVLVPDGAALSAYQYFENVRNFL 124 (1009)
Q Consensus 45 ea~~WL~~~lg~~~~~~lp~~~~ee~f~~~LrDGvvLCkL~N~l~PGsV~Ki~~~~~~~~~~~g~~~~~f~~~ENI~~FL 124 (1009)
---.|+...++.+. --..||..-|+||+.|.+|+..|.--..+|-.... +-.+|+||+..=|
T Consensus 52 TFTKWvNShL~rv~-------c~I~DLy~DlrDG~~LlkLLEvlSGE~LpkPtrGR-----------MRIH~LENvdKaL 113 (2473)
T KOG0517|consen 52 TFTKWVNSHLARVS-------CRIGDLYTDLRDGIMLLKLLEVLSGERLPKPTRGR-----------MRIHCLENVDKAL 113 (2473)
T ss_pred hHHHHHHHHHHHhc-------chhHHHHHHHhhhHHHHHHHHHHccccCCCCCCCc-----------eeehhHhhhHHHH
Confidence 34469999887642 23468999999999999999999866666543333 7899999999999
Q ss_pred HHHHhcCCC--CccCCchhcC
Q 001820 125 VAVQEMGLP--TFEASDLEQG 143 (1009)
Q Consensus 125 ~ac~~lGvp--~Fet~DL~eg 143 (1009)
.+.++-.|+ ..-+.|+.+|
T Consensus 114 qFLkeqkVhLEniGshDIVDG 134 (2473)
T KOG0517|consen 114 QFLKEQKVHLENIGSHDIVDG 134 (2473)
T ss_pred HHHHhcccccccCCcccccCC
Confidence 999875555 3666666665
No 70
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=79.25 E-value=1.4 Score=50.88 Aligned_cols=39 Identities=26% Similarity=0.477 Sum_probs=27.3
Q ss_pred CChHhHHhhhHHHHHHHhc-CCceeEEeecccCCCCceee
Q 001820 448 ATQAEVFSDMQPLIRSVLD-GYNVCIFAYGQTGSGKTYTM 486 (1009)
Q Consensus 448 atQeeVF~~v~pLV~svLd-G~N~~IfAYGqTGSGKTyTM 486 (1009)
...++-++.+...+..++. +...+++-||++|+|||+++
T Consensus 33 ~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~ 72 (394)
T PRK00411 33 PHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTV 72 (394)
T ss_pred CCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHH
Confidence 3445555555555555554 45567899999999999987
No 71
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=78.63 E-value=1.1 Score=45.11 Aligned_cols=29 Identities=28% Similarity=0.312 Sum_probs=19.6
Q ss_pred HHHHHhcC-CceeEEeecccCCCCceeecC
Q 001820 460 LIRSVLDG-YNVCIFAYGQTGSGKTYTMTG 488 (1009)
Q Consensus 460 LV~svLdG-~N~~IfAYGqTGSGKTyTM~G 488 (1009)
+++.+-.+ ...-++..++||||||++|..
T Consensus 15 i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~ 44 (184)
T PF04851_consen 15 IINSLENKKEERRVLLNAPTGSGKTIIALA 44 (184)
T ss_dssp HHHHHHTTSGCSEEEEEESTTSSHHHHHHH
T ss_pred HHHHHHhcCCCCCEEEEECCCCCcChhhhh
Confidence 33333333 345566678999999999974
No 72
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=78.53 E-value=10 Score=47.36 Aligned_cols=27 Identities=33% Similarity=0.529 Sum_probs=21.7
Q ss_pred HHHHHhcCCceeEEeecccCCCCceee
Q 001820 460 LIRSVLDGYNVCIFAYGQTGSGKTYTM 486 (1009)
Q Consensus 460 LV~svLdG~N~~IfAYGqTGSGKTyTM 486 (1009)
++..+..++...|+-||++|+|||+..
T Consensus 166 l~~~ia~~~~~~vlL~Gp~GtGKTTLA 192 (615)
T TIGR02903 166 LLAKVASPFPQHIILYGPPGVGKTTAA 192 (615)
T ss_pred HHHHHhcCCCCeEEEECCCCCCHHHHH
Confidence 455556677778888999999999876
No 73
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=77.63 E-value=1.5 Score=51.01 Aligned_cols=32 Identities=34% Similarity=0.614 Sum_probs=23.0
Q ss_pred hhhHHHHHHHhcCCcee-EEeecccCCCCceee
Q 001820 455 SDMQPLIRSVLDGYNVC-IFAYGQTGSGKTYTM 486 (1009)
Q Consensus 455 ~~v~pLV~svLdG~N~~-IfAYGqTGSGKTyTM 486 (1009)
+.+..++..++.|.-.. ++.||.||+|||.|+
T Consensus 27 ~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~ 59 (366)
T COG1474 27 NQLASFLAPALRGERPSNIIIYGPTGTGKTATV 59 (366)
T ss_pred HHHHHHHHHHhcCCCCccEEEECCCCCCHhHHH
Confidence 33444556666554444 999999999999887
No 74
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=77.61 E-value=1.6 Score=48.29 Aligned_cols=49 Identities=20% Similarity=0.246 Sum_probs=34.8
Q ss_pred EEeceeeCCCCChHhHHhhhHHHHHHHhcCCceeEEeecccCCCCceeecC
Q 001820 438 FSFNKVYGPSATQAEVFSDMQPLIRSVLDGYNVCIFAYGQTGSGKTYTMTG 488 (1009)
Q Consensus 438 F~FD~VF~~~atQeeVF~~v~pLV~svLdG~N~~IfAYGqTGSGKTyTM~G 488 (1009)
|.|..+-.....+..+|..+..++..+-+|.| ++-||++|+||||-..+
T Consensus 76 ~~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~n--l~l~G~~G~GKThLa~A 124 (254)
T COG1484 76 FEEFDFEFQPGIDKKALEDLASLVEFFERGEN--LVLLGPPGVGKTHLAIA 124 (254)
T ss_pred cccccccCCcchhHHHHHHHHHHHHHhccCCc--EEEECCCCCcHHHHHHH
Confidence 33333333455778888888878777775555 46699999999999854
No 75
>PRK08939 primosomal protein DnaI; Reviewed
Probab=77.35 E-value=1.3 Score=50.39 Aligned_cols=51 Identities=16% Similarity=0.299 Sum_probs=34.0
Q ss_pred EEeceeeCCCCChHhHHhhhHHHHHHHhcC-CceeEEeecccCCCCceeecC
Q 001820 438 FSFNKVYGPSATQAEVFSDMQPLIRSVLDG-YNVCIFAYGQTGSGKTYTMTG 488 (1009)
Q Consensus 438 F~FD~VF~~~atQeeVF~~v~pLV~svLdG-~N~~IfAYGqTGSGKTyTM~G 488 (1009)
.+||.+-.....+..++..+...++....| ..-.++-||++|+||||.+.+
T Consensus 124 atf~~~~~~~~~~~~~~~~~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~A 175 (306)
T PRK08939 124 ASLADIDLDDRDRLDALMAALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAA 175 (306)
T ss_pred CcHHHhcCCChHHHHHHHHHHHHHHHhhccCCCCeEEEECCCCCCHHHHHHH
Confidence 455554333335666776666666665543 234699999999999999955
No 76
>PRK08727 hypothetical protein; Validated
Probab=75.68 E-value=1.7 Score=47.27 Aligned_cols=46 Identities=20% Similarity=0.355 Sum_probs=28.0
Q ss_pred eeEEeceeeCCCCChHhHHhhhHHHHHHHhcCCc-eeEEeecccCCCCceeecC
Q 001820 436 KSFSFNKVYGPSATQAEVFSDMQPLIRSVLDGYN-VCIFAYGQTGSGKTYTMTG 488 (1009)
Q Consensus 436 k~F~FD~VF~~~atQeeVF~~v~pLV~svLdG~N-~~IfAYGqTGSGKTyTM~G 488 (1009)
..|+||.-+.... + ....+..+. .|+. -.|+-||++|+||||.+..
T Consensus 14 ~~~~f~~f~~~~~-n--~~~~~~~~~----~~~~~~~l~l~G~~G~GKThL~~a 60 (233)
T PRK08727 14 SDQRFDSYIAAPD-G--LLAQLQALA----AGQSSDWLYLSGPAGTGKTHLALA 60 (233)
T ss_pred CcCChhhccCCcH-H--HHHHHHHHH----hccCCCeEEEECCCCCCHHHHHHH
Confidence 3568888664333 2 222222222 2332 4599999999999999854
No 77
>PRK08181 transposase; Validated
Probab=75.49 E-value=1.7 Score=48.53 Aligned_cols=21 Identities=29% Similarity=0.621 Sum_probs=17.7
Q ss_pred cCCceeEEeecccCCCCceeecC
Q 001820 466 DGYNVCIFAYGQTGSGKTYTMTG 488 (1009)
Q Consensus 466 dG~N~~IfAYGqTGSGKTyTM~G 488 (1009)
.|.| |+-||++|+||||-+.+
T Consensus 105 ~~~n--lll~Gp~GtGKTHLa~A 125 (269)
T PRK08181 105 KGAN--LLLFGPPGGGKSHLAAA 125 (269)
T ss_pred cCce--EEEEecCCCcHHHHHHH
Confidence 4555 78999999999999865
No 78
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=75.30 E-value=1.7 Score=41.09 Aligned_cols=25 Identities=24% Similarity=0.292 Sum_probs=18.0
Q ss_pred HHHhcCCceeEEeecccCCCCceee
Q 001820 462 RSVLDGYNVCIFAYGQTGSGKTYTM 486 (1009)
Q Consensus 462 ~svLdG~N~~IfAYGqTGSGKTyTM 486 (1009)
..+.......++.+|++|+|||+++
T Consensus 12 ~~~~~~~~~~v~i~G~~G~GKT~l~ 36 (151)
T cd00009 12 EALELPPPKNLLLYGPPGTGKTTLA 36 (151)
T ss_pred HHHhCCCCCeEEEECCCCCCHHHHH
Confidence 3333334456888999999999876
No 79
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=74.85 E-value=28 Score=34.78 Aligned_cols=74 Identities=19% Similarity=0.270 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhhHHHhhHHHHHhhhhHHHHHHhhhhhhhhcc
Q 001820 315 KSQSLKQKMIFDQQHEDIQELKHTLHTTKAGIQFMQMKFHEEFSNLGIHIHGLAHAASGYHRVLEENRKLYNQVQDL 391 (1009)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~k~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~e~r~l~n~~qel 391 (1009)
-..+...+..+...+.++.+|+......+..+......|.++-..|...+..+. .++...-..|+-||++|..+
T Consensus 58 ~~~L~~lr~e~~~~~~~~~~l~~~~~~a~~~l~~~e~sw~~qk~~le~e~~~~~---~r~~dL~~QN~lLh~QlE~l 131 (132)
T PF07926_consen 58 IKELQQLREELQELQQEINELKAEAESAKAELEESEASWEEQKEQLEKELSELE---QRIEDLNEQNKLLHDQLESL 131 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhhc
Confidence 334556667777888888899999988888888888888887777777665554 44555557799999999764
No 80
>PRK06526 transposase; Provisional
Probab=73.98 E-value=1.5 Score=48.50 Aligned_cols=21 Identities=33% Similarity=0.472 Sum_probs=17.3
Q ss_pred cCCceeEEeecccCCCCceeecC
Q 001820 466 DGYNVCIFAYGQTGSGKTYTMTG 488 (1009)
Q Consensus 466 dG~N~~IfAYGqTGSGKTyTM~G 488 (1009)
.+.| |+.||++|+||||.+.+
T Consensus 97 ~~~n--lll~Gp~GtGKThLa~a 117 (254)
T PRK06526 97 GKEN--VVFLGPPGTGKTHLAIG 117 (254)
T ss_pred cCce--EEEEeCCCCchHHHHHH
Confidence 3555 78899999999999864
No 81
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=73.69 E-value=1.2 Score=41.68 Aligned_cols=17 Identities=35% Similarity=0.389 Sum_probs=15.0
Q ss_pred EEeecccCCCCceeecC
Q 001820 472 IFAYGQTGSGKTYTMTG 488 (1009)
Q Consensus 472 IfAYGqTGSGKTyTM~G 488 (1009)
++.+|+||+|||+++..
T Consensus 3 ~~i~~~~G~GKT~~~~~ 19 (144)
T cd00046 3 VLLAAPTGSGKTLAALL 19 (144)
T ss_pred EEEECCCCCchhHHHHH
Confidence 57789999999999965
No 82
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=72.42 E-value=82 Score=29.23 Aligned_cols=45 Identities=13% Similarity=0.293 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhhHHHh
Q 001820 321 QKMIFDQQHEDIQELKHTLHTTKAGIQFMQMKFHEEFSNLGIHIH 365 (1009)
Q Consensus 321 ~~~~~~~~~~~~~~l~~~l~~~k~~~~~~~~~~~~~~~~l~~~~~ 365 (1009)
....+.+|-.|++.++.++-.+......++..|.+++.+|...|.
T Consensus 30 ~e~ki~~Qi~Em~~ir~~v~eLE~~h~kmK~~YEeEI~rLr~eLe 74 (79)
T PF08581_consen 30 YEHKINSQIQEMQQIRQKVYELEQAHRKMKQQYEEEIARLRRELE 74 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444578888899999999999999999999999999998887764
No 83
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=72.23 E-value=1.9 Score=50.88 Aligned_cols=52 Identities=17% Similarity=0.300 Sum_probs=31.2
Q ss_pred ceeEEeceeeCCCCChHhHHhhhHHHHHHHhcCCceeEEeecccCCCCceeecC
Q 001820 435 WKSFSFNKVYGPSATQAEVFSDMQPLIRSVLDGYNVCIFAYGQTGSGKTYTMTG 488 (1009)
Q Consensus 435 ~k~F~FD~VF~~~atQeeVF~~v~pLV~svLdG~N~~IfAYGqTGSGKTyTM~G 488 (1009)
...|+||...... ++.-.|.....+-+ .-.+.---||-||.+|+||||-|..
T Consensus 81 ~~~ytFdnFv~g~-~N~~A~aa~~~va~-~~g~~~nplfi~G~~GlGKTHLl~A 132 (408)
T COG0593 81 NPKYTFDNFVVGP-SNRLAYAAAKAVAE-NPGGAYNPLFIYGGVGLGKTHLLQA 132 (408)
T ss_pred CCCCchhheeeCC-chHHHHHHHHHHHh-ccCCcCCcEEEECCCCCCHHHHHHH
Confidence 3568999866443 33444443322222 2222233488999999999999943
No 84
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=72.10 E-value=1.4 Score=56.14 Aligned_cols=33 Identities=27% Similarity=0.521 Sum_probs=24.2
Q ss_pred HhhhHHHHHHHhc--CCceeEEeecccCCCCceee
Q 001820 454 FSDMQPLIRSVLD--GYNVCIFAYGQTGSGKTYTM 486 (1009)
Q Consensus 454 F~~v~pLV~svLd--G~N~~IfAYGqTGSGKTyTM 486 (1009)
++.+..++..++. |-+.+||.||++|+|||.|+
T Consensus 764 IeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATV 798 (1164)
T PTZ00112 764 IKEVHGFLESGIKQSGSNQILYISGMPGTGKTATV 798 (1164)
T ss_pred HHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHH
Confidence 3445555666664 44567899999999999998
No 85
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=71.42 E-value=4 Score=46.75 Aligned_cols=28 Identities=32% Similarity=0.377 Sum_probs=19.7
Q ss_pred HHHHHHHhcCCceeEEeecccCCCCceee
Q 001820 458 QPLIRSVLDGYNVCIFAYGQTGSGKTYTM 486 (1009)
Q Consensus 458 ~pLV~svLdG~N~~IfAYGqTGSGKTyTM 486 (1009)
..++..++.+. ..|+-.|.||||||++|
T Consensus 138 ~~~L~~~v~~~-~~ilI~G~tGSGKTTll 165 (319)
T PRK13894 138 REAIIAAVRAH-RNILVIGGTGSGKTTLV 165 (319)
T ss_pred HHHHHHHHHcC-CeEEEECCCCCCHHHHH
Confidence 34555555543 45666699999999877
No 86
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=71.39 E-value=3.7 Score=45.28 Aligned_cols=53 Identities=19% Similarity=0.265 Sum_probs=34.1
Q ss_pred eCCHHHHHHHHHhhhcccccccccccCCCCCCceEEEEEEeeeecCCCceEEEEEEEEeccCCccc
Q 001820 567 VSSTADVINLMNLGQKNRAVGATALNDRSSRSHSCLTVHVQGKDLTSGTMYRGCMHLVDLAGSERV 632 (1009)
Q Consensus 567 V~S~eev~~lL~~G~~nR~vasT~~N~~SSRSH~IftI~V~~~~~~~~~~~~s~L~LVDLAGSER~ 632 (1009)
+.+.+++...+...... ..+. ...-|.-++.|+|.+.+. -.|+||||+|-.+.
T Consensus 86 ~~~~~~v~~~i~~~~~~-~~~~-----~~~~s~~~i~l~i~~p~~-------~~ltLIDlPGl~~~ 138 (240)
T smart00053 86 FTDFDEVRNEIEAETDR-VTGT-----NKGISPVPINLRVYSPHV-------LNLTLIDLPGITKV 138 (240)
T ss_pred cCCHHHHHHHHHHHHHH-hcCC-----CCcccCcceEEEEeCCCC-------CceEEEeCCCcccc
Confidence 35788888888765432 1111 123466688888876543 35899999998643
No 87
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=71.28 E-value=1.9 Score=48.48 Aligned_cols=43 Identities=23% Similarity=0.341 Sum_probs=28.2
Q ss_pred EEeceeeCCCCChHhHHhhhHHHHHHHhcCCceeEEeecccCCCCceeec
Q 001820 438 FSFNKVYGPSATQAEVFSDMQPLIRSVLDGYNVCIFAYGQTGSGKTYTMT 487 (1009)
Q Consensus 438 F~FD~VF~~~atQeeVF~~v~pLV~svLdG~N~~IfAYGqTGSGKTyTM~ 487 (1009)
-+||.+.+ |+++.+.+..++. .|....++-||++|+|||++..
T Consensus 12 ~~~~~~~g----~~~~~~~L~~~~~---~~~~~~lll~Gp~GtGKT~la~ 54 (337)
T PRK12402 12 ALLEDILG----QDEVVERLSRAVD---SPNLPHLLVQGPPGSGKTAAVR 54 (337)
T ss_pred CcHHHhcC----CHHHHHHHHHHHh---CCCCceEEEECCCCCCHHHHHH
Confidence 34666664 5555555544443 3443357889999999999883
No 88
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=70.86 E-value=8.2 Score=46.23 Aligned_cols=16 Identities=38% Similarity=0.700 Sum_probs=14.0
Q ss_pred eEEeecccCCCCceee
Q 001820 471 CIFAYGQTGSGKTYTM 486 (1009)
Q Consensus 471 ~IfAYGqTGSGKTyTM 486 (1009)
.|+-||++|+|||++.
T Consensus 219 gVLL~GPPGTGKT~LA 234 (438)
T PTZ00361 219 GVILYGPPGTGKTLLA 234 (438)
T ss_pred EEEEECCCCCCHHHHH
Confidence 4778999999999886
No 89
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=70.40 E-value=1.9 Score=52.99 Aligned_cols=29 Identities=28% Similarity=0.370 Sum_probs=24.0
Q ss_pred HHHHHhcCCceeEEeecccCCCCceeecC
Q 001820 460 LIRSVLDGYNVCIFAYGQTGSGKTYTMTG 488 (1009)
Q Consensus 460 LV~svLdG~N~~IfAYGqTGSGKTyTM~G 488 (1009)
.+..++..-++.|+..|+||||||+||..
T Consensus 307 ~l~~~~~~~~Glilv~G~tGSGKTTtl~a 335 (564)
T TIGR02538 307 LFLEAIHKPQGMVLVTGPTGSGKTVSLYT 335 (564)
T ss_pred HHHHHHHhcCCeEEEECCCCCCHHHHHHH
Confidence 45566677788999999999999999843
No 90
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=70.18 E-value=2.2 Score=51.62 Aligned_cols=30 Identities=30% Similarity=0.364 Sum_probs=24.1
Q ss_pred HHHHHHhcCCceeEEeecccCCCCceeecC
Q 001820 459 PLIRSVLDGYNVCIFAYGQTGSGKTYTMTG 488 (1009)
Q Consensus 459 pLV~svLdG~N~~IfAYGqTGSGKTyTM~G 488 (1009)
..+..++..-++.|+..|+||||||.||..
T Consensus 232 ~~l~~~~~~~~GlilitGptGSGKTTtL~a 261 (486)
T TIGR02533 232 SRFERLIRRPHGIILVTGPTGSGKTTTLYA 261 (486)
T ss_pred HHHHHHHhcCCCEEEEEcCCCCCHHHHHHH
Confidence 345556677778899999999999999953
No 91
>PRK10436 hypothetical protein; Provisional
Probab=69.93 E-value=2.1 Score=51.44 Aligned_cols=28 Identities=39% Similarity=0.449 Sum_probs=23.3
Q ss_pred HHHHHhcCCceeEEeecccCCCCceeec
Q 001820 460 LIRSVLDGYNVCIFAYGQTGSGKTYTMT 487 (1009)
Q Consensus 460 LV~svLdG~N~~IfAYGqTGSGKTyTM~ 487 (1009)
.+..++..-++.|+..|+||||||.||.
T Consensus 209 ~l~~~~~~~~GliLvtGpTGSGKTTtL~ 236 (462)
T PRK10436 209 QFRQALQQPQGLILVTGPTGSGKTVTLY 236 (462)
T ss_pred HHHHHHHhcCCeEEEECCCCCChHHHHH
Confidence 4555666778899999999999999994
No 92
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=69.56 E-value=2.3 Score=42.38 Aligned_cols=28 Identities=32% Similarity=0.479 Sum_probs=21.7
Q ss_pred HHHHHHhcCCceeEEeecccCCCCceeecC
Q 001820 459 PLIRSVLDGYNVCIFAYGQTGSGKTYTMTG 488 (1009)
Q Consensus 459 pLV~svLdG~N~~IfAYGqTGSGKTyTM~G 488 (1009)
.++..+++|.+ ++..|+||||||+....
T Consensus 6 ~~~~~i~~~~~--~li~aptGsGKT~~~~~ 33 (169)
T PF00270_consen 6 EAIEAIISGKN--VLISAPTGSGKTLAYIL 33 (169)
T ss_dssp HHHHHHHTTSE--EEEECSTTSSHHHHHHH
T ss_pred HHHHHHHcCCC--EEEECCCCCccHHHHHH
Confidence 34555667777 67889999999998854
No 93
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=69.48 E-value=2.9 Score=50.08 Aligned_cols=52 Identities=23% Similarity=0.314 Sum_probs=35.3
Q ss_pred ceeEEeceeeCCCCChHhHHhhhHHHHHHH--hcC--CceeEEeecccCCCCceeecC
Q 001820 435 WKSFSFNKVYGPSATQAEVFSDMQPLIRSV--LDG--YNVCIFAYGQTGSGKTYTMTG 488 (1009)
Q Consensus 435 ~k~F~FD~VF~~~atQeeVF~~v~pLV~sv--LdG--~N~~IfAYGqTGSGKTyTM~G 488 (1009)
...|+||.-+-. .++...|..+..+.... ..| || .+|-||++|+||||.+..
T Consensus 105 ~~~~tFdnFv~g-~~N~~a~~~a~~~a~~~~~~~~~~~n-pl~L~G~~G~GKTHLl~A 160 (445)
T PRK12422 105 DPLMTFANFLVT-PENDLPHRILQEFTKVSEQGKGFPFN-PIYLFGPEGSGKTHLMQA 160 (445)
T ss_pred CccccccceeeC-CcHHHHHHHHHHHHhccccccCCCCc-eEEEEcCCCCCHHHHHHH
Confidence 457899987643 35666676666555433 223 44 367899999999999854
No 94
>PRK06921 hypothetical protein; Provisional
Probab=69.38 E-value=3.1 Score=46.32 Aligned_cols=37 Identities=24% Similarity=0.334 Sum_probs=25.3
Q ss_pred hHHhhhHHHHHHHhc---CCceeEEeecccCCCCceeecC
Q 001820 452 EVFSDMQPLIRSVLD---GYNVCIFAYGQTGSGKTYTMTG 488 (1009)
Q Consensus 452 eVF~~v~pLV~svLd---G~N~~IfAYGqTGSGKTyTM~G 488 (1009)
.++..+...++.+-. +..-.|+-||++|+||||.+..
T Consensus 97 ~~~~~~~~~~~~f~~~~~~~~~~l~l~G~~G~GKThLa~a 136 (266)
T PRK06921 97 DAYECAVEYVKDFEKIQESRKNSIALLGQPGSGKTHLLTA 136 (266)
T ss_pred HHHHHHHHHHHHHHHhcccCCCeEEEECCCCCcHHHHHHH
Confidence 455545556665532 2345688999999999999854
No 95
>PF13245 AAA_19: Part of AAA domain
Probab=69.37 E-value=2.2 Score=38.68 Aligned_cols=26 Identities=31% Similarity=0.455 Sum_probs=17.9
Q ss_pred HHHHhcCCceeEEeecccCCCCceeec
Q 001820 461 IRSVLDGYNVCIFAYGQTGSGKTYTMT 487 (1009)
Q Consensus 461 V~svLdG~N~~IfAYGqTGSGKTyTM~ 487 (1009)
|..++. -+..+...|+.|||||+|+.
T Consensus 3 v~~al~-~~~~~vv~g~pGtGKT~~~~ 28 (76)
T PF13245_consen 3 VRRALA-GSPLFVVQGPPGTGKTTTLA 28 (76)
T ss_pred HHHHHh-hCCeEEEECCCCCCHHHHHH
Confidence 444555 33334458999999999984
No 96
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=69.18 E-value=1.4 Score=42.31 Aligned_cols=18 Identities=33% Similarity=0.458 Sum_probs=13.2
Q ss_pred ceeEEeecccCCCCceee
Q 001820 469 NVCIFAYGQTGSGKTYTM 486 (1009)
Q Consensus 469 N~~IfAYGqTGSGKTyTM 486 (1009)
..+++.+|.+|+|||.++
T Consensus 4 ~~~~~i~G~~G~GKT~~~ 21 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLI 21 (131)
T ss_dssp ---EEEEE-TTSSHHHHH
T ss_pred CcccEEEcCCCCCHHHHH
Confidence 457899999999999887
No 97
>PF06294 DUF1042: Domain of Unknown Function (DUF1042); InterPro: IPR010441 This is a family of proteins of unknown function.; PDB: 2EE7_A.
Probab=68.45 E-value=11 Score=39.10 Aligned_cols=81 Identities=15% Similarity=0.261 Sum_probs=50.6
Q ss_pred ChHHHHHHcccchHHHHHHHhhcCCCcCceecCCCccccCCccccchhhHHHHHHHH-HHHHHhcCCCCccCCchh---c
Q 001820 67 SEEEFRLGLRSGIILCNVINKVQPGAVPKVVESPDTVLVPDGAALSAYQYFENVRNF-LVAVQEMGLPTFEASDLE---Q 142 (1009)
Q Consensus 67 ~ee~f~~~LrDGvvLCkL~N~l~PGsV~Ki~~~~~~~~~~~g~~~~~f~~~ENI~~F-L~ac~~lGvp~Fet~DL~---e 142 (1009)
+.-.+...+.||++++.++.+..|..|.--+-.+. .+.-.-+.|-..| .+.++.+|++ |...+++ .
T Consensus 13 ~~~n~~rDfsdG~lvAEIl~~y~p~~vdlh~y~~~---------~s~~~Kl~NW~~Ln~kvl~kl~~~-l~~~~i~~i~~ 82 (158)
T PF06294_consen 13 PPKNIRRDFSDGYLVAEILSRYYPKLVDLHNYSNG---------NSVAQKLNNWETLNEKVLKKLGIK-LDKEDIEGIIN 82 (158)
T ss_dssp -SS-HHHHHTTSHHHHHHHHHH-TTT---SS-------------SSHHHHHHHHHHHHHHTTGGGT-----HHHHHHHHT
T ss_pred CCCchHHHcccccHHHHHHHHHCCCCccccccCCC---------CCHHHHHHHHHHHHHHHHHHcCCC-CCHHHHHHHHh
Confidence 33468899999999999999999998764433331 1455678899999 8888999986 4444444 2
Q ss_pred --CCChhHHHHHHHHHH
Q 001820 143 --GGKSARVVNCVLALK 157 (1009)
Q Consensus 143 --gkn~~kVv~cL~aL~ 157 (1009)
.+-...++.+|...-
T Consensus 83 ~~~Gaae~lL~~L~~~l 99 (158)
T PF06294_consen 83 CKPGAAESLLYQLYTKL 99 (158)
T ss_dssp T-TTTTHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 355667777777664
No 98
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=67.96 E-value=1.7 Score=40.41 Aligned_cols=19 Identities=37% Similarity=0.461 Sum_probs=16.1
Q ss_pred eeEEeecccCCCCceeecC
Q 001820 470 VCIFAYGQTGSGKTYTMTG 488 (1009)
Q Consensus 470 ~~IfAYGqTGSGKTyTM~G 488 (1009)
..++-+|++|||||+++..
T Consensus 3 ~~~~l~G~~G~GKTtl~~~ 21 (148)
T smart00382 3 EVILIVGPPGSGKTTLARA 21 (148)
T ss_pred CEEEEECCCCCcHHHHHHH
Confidence 4678899999999999843
No 99
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=67.66 E-value=4.6 Score=44.78 Aligned_cols=130 Identities=16% Similarity=0.255 Sum_probs=73.3
Q ss_pred EEeceeeCCCCChHhHHhhhHHHHHHHhcCCce-eEEeecccCCCCceeecCCCCCCccccchhhHHHHHHHHHHHHhcc
Q 001820 438 FSFNKVYGPSATQAEVFSDMQPLIRSVLDGYNV-CIFAYGQTGSGKTYTMTGPRELTEKSQGVNYRALSDLFLIAEQRKD 516 (1009)
Q Consensus 438 F~FD~VF~~~atQeeVF~~v~pLV~svLdG~N~-~IfAYGqTGSGKTyTM~G~~~~~~~~~GIipRal~dLF~~~~~~~~ 516 (1009)
..+|...+-+...+.+.+.+ ..+++|..+ .++-||..|+|||.++-. |+..... .
T Consensus 24 ~~l~~L~Gie~Qk~~l~~Nt----~~Fl~G~pannvLL~G~rGtGKSSlVka------------------ll~~y~~--~ 79 (249)
T PF05673_consen 24 IRLDDLIGIERQKEALIENT----EQFLQGLPANNVLLWGARGTGKSSLVKA------------------LLNEYAD--Q 79 (249)
T ss_pred CCHHHhcCHHHHHHHHHHHH----HHHHcCCCCcceEEecCCCCCHHHHHHH------------------HHHHHhh--c
Confidence 44566666555555555544 456677655 366799999999888732 1211111 1
Q ss_pred ceeEEEEEEEEEEecceeeecccCCCCCcccccccCCCC-CccCCCCeEEEe-CCHHHHHHHHHhhhcccccccccccCC
Q 001820 517 IFRYDVAVQMLEIYNEQVRDLLVTDGSNRRLEIRNSSQT-GLNVPDASLIPV-SSTADVINLMNLGQKNRAVGATALNDR 594 (1009)
Q Consensus 517 ~~~y~V~vS~lEIYnE~V~DLL~~~~~~~~L~Ire~~~~-g~~V~glt~v~V-~S~eev~~lL~~G~~nR~vasT~~N~~ 594 (1009)
.+-++||..+.+.||-.--. .++..+.. -+++.+|+.-.- .++..+..+|+-|...| .....+...
T Consensus 80 ------GLRlIev~k~~L~~l~~l~~-----~l~~~~~kFIlf~DDLsFe~~d~~yk~LKs~LeGgle~~-P~NvliyAT 147 (249)
T PF05673_consen 80 ------GLRLIEVSKEDLGDLPELLD-----LLRDRPYKFILFCDDLSFEEGDTEYKALKSVLEGGLEAR-PDNVLIYAT 147 (249)
T ss_pred ------CceEEEECHHHhccHHHHHH-----HHhcCCCCEEEEecCCCCCCCcHHHHHHHHHhcCccccC-CCcEEEEEe
Confidence 16688999888777641000 11111111 134555554332 24566777787776555 455566677
Q ss_pred CCCCceEEE
Q 001820 595 SSRSHSCLT 603 (1009)
Q Consensus 595 SSRSH~Ift 603 (1009)
|.|-|.|=.
T Consensus 148 SNRRHLv~E 156 (249)
T PF05673_consen 148 SNRRHLVPE 156 (249)
T ss_pred cchhhccch
Confidence 788887653
No 100
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=67.63 E-value=2.5 Score=48.68 Aligned_cols=28 Identities=32% Similarity=0.494 Sum_probs=20.7
Q ss_pred HHHHHhcCCceeEEeecccCCCCceeec
Q 001820 460 LIRSVLDGYNVCIFAYGQTGSGKTYTMT 487 (1009)
Q Consensus 460 LV~svLdG~N~~IfAYGqTGSGKTyTM~ 487 (1009)
.+..++.--.+.|+-.|+||||||+||.
T Consensus 113 ~l~~~~~~~~g~ili~G~tGSGKTT~l~ 140 (343)
T TIGR01420 113 VLRELAERPRGLILVTGPTGSGKSTTLA 140 (343)
T ss_pred HHHHHHhhcCcEEEEECCCCCCHHHHHH
Confidence 3444444345778999999999999994
No 101
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=67.21 E-value=2.1 Score=44.71 Aligned_cols=30 Identities=33% Similarity=0.497 Sum_probs=21.9
Q ss_pred hHHHHHHHhcCCceeEEeecccCCCCceee
Q 001820 457 MQPLIRSVLDGYNVCIFAYGQTGSGKTYTM 486 (1009)
Q Consensus 457 v~pLV~svLdG~N~~IfAYGqTGSGKTyTM 486 (1009)
+..|...+-.|.+.+++-||+.|+|||+.|
T Consensus 8 l~~l~~~l~~~~~~~~~l~G~rg~GKTsLl 37 (234)
T PF01637_consen 8 LEKLKELLESGPSQHILLYGPRGSGKTSLL 37 (234)
T ss_dssp HHHHHHCHHH--SSEEEEEESTTSSHHHHH
T ss_pred HHHHHHHHHhhcCcEEEEEcCCcCCHHHHH
Confidence 444544444567889999999999999987
No 102
>PF01935 DUF87: Domain of unknown function DUF87; InterPro: IPR002789 The function of this domain is unknown. It contains several conserved aspartates and histidines that could be metal ligands.
Probab=67.09 E-value=1.9 Score=46.12 Aligned_cols=57 Identities=18% Similarity=0.265 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCCCchhhHhhhhhcCCCceeeEEEecCCCCCcHHHH
Q 001820 649 NRSLSALGDVIASLAQKNPHVPYRNSKLTQLLQDSLGGQAKTLMFVHISPEPDAVGET 706 (1009)
Q Consensus 649 NkSLsaLg~VI~ALa~k~~hIPYRdSKLT~LLqdsLGGnskT~mI~~ISP~~~~~~ET 706 (1009)
.....++-+.+..|.......+--...+...|-+.++.+.++ .|+.+|--+......
T Consensus 164 ~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~i-~IiDLs~~~~~~~~~ 220 (229)
T PF01935_consen 164 SSTIRALLRRLERLFRRGSFFSSTPEDIIKLLLDYLNKPGKI-VIIDLSGVDEEVQDI 220 (229)
T ss_pred HHHHHHHHHHHHHHHhcccccccCcccHHHHhhhhcCCCCCE-EEEECCCCCHHHHHH
Confidence 344455555555555444433333345555666666555544 444666544443333
No 103
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=67.01 E-value=1.6 Score=44.22 Aligned_cols=33 Identities=24% Similarity=0.438 Sum_probs=18.0
Q ss_pred HhhhHHHHHHHhcCCceeEEeecccCCCCceee
Q 001820 454 FSDMQPLIRSVLDGYNVCIFAYGQTGSGKTYTM 486 (1009)
Q Consensus 454 F~~v~pLV~svLdG~N~~IfAYGqTGSGKTyTM 486 (1009)
++.+..++.....|..-+++-+|..|+|||+.+
T Consensus 9 ~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll 41 (185)
T PF13191_consen 9 IERLRDLLDAAQSGSPRNLLLTGESGSGKTSLL 41 (185)
T ss_dssp HHHHHHTTGGTSS-----EEE-B-TTSSHHHHH
T ss_pred HHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHH
Confidence 334444444334667788999999999999886
No 104
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=66.64 E-value=46 Score=39.05 Aligned_cols=126 Identities=18% Similarity=0.295 Sum_probs=63.3
Q ss_pred cCCCeEEEEEeCCCCCCCCCCCcceEeecCCeEEE--eCCCCCCCCce--------eEEeceeeCCCCChHhHHhhh-HH
Q 001820 391 LKGSIRVYCRVRPFLSGQSNYLSTVDHIEEGNITI--NTPSKHGKGWK--------SFSFNKVYGPSATQAEVFSDM-QP 459 (1009)
Q Consensus 391 lkGnIrV~~RVRP~~~~E~~~~~~v~~~~~~~i~v--~~p~~~gk~~k--------~F~FD~VF~~~atQeeVF~~v-~p 459 (1009)
..+.-+.+|++.++...+.-...+.+.++..+..| .-|........ .-+|+.|=+-+..-++|.+.| -|
T Consensus 91 s~~g~~~vV~i~~~vd~~~L~pG~rVal~~~s~~Iv~vLp~~~Dp~V~~M~v~e~PdvtY~dIGGL~~Qi~EirE~VELP 170 (406)
T COG1222 91 SSTGPKFVVNILSFVDRDLLEPGMRVALNRDSYSIVRVLPPEVDPRVSVMEVEEKPDVTYEDIGGLDEQIQEIREVVELP 170 (406)
T ss_pred eCCCCeEEEeccCCcCHHHcCCCCEEEEcCCcceeeeeCCCccCchhheeeeccCCCCChhhccCHHHHHHHHHHHhccc
Confidence 34556667777776554432222333333333333 33333221111 123333333333334444444 34
Q ss_pred HHH-HHhc--CCce--eEEeecccCCCCceee--------------cCCCCCCccccchhhHHHHHHHHHHHHhccc
Q 001820 460 LIR-SVLD--GYNV--CIFAYGQTGSGKTYTM--------------TGPRELTEKSQGVNYRALSDLFLIAEQRKDI 517 (1009)
Q Consensus 460 LV~-svLd--G~N~--~IfAYGqTGSGKTyTM--------------~G~~~~~~~~~GIipRal~dLF~~~~~~~~~ 517 (1009)
|.+ ..+. |..- -|+-||+.|+|||-.- .|+ +.-..--|==+|.+++||..+..+...
T Consensus 171 L~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgS-ElVqKYiGEGaRlVRelF~lArekaPs 246 (406)
T COG1222 171 LKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGS-ELVQKYIGEGARLVRELFELAREKAPS 246 (406)
T ss_pred ccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccH-HHHHHHhccchHHHHHHHHHHhhcCCe
Confidence 442 2222 4433 5899999999998532 221 011123355689999999999877664
No 105
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=65.84 E-value=2.1 Score=45.28 Aligned_cols=18 Identities=39% Similarity=0.584 Sum_probs=16.0
Q ss_pred eeEEeecccCCCCceeec
Q 001820 470 VCIFAYGQTGSGKTYTMT 487 (1009)
Q Consensus 470 ~~IfAYGqTGSGKTyTM~ 487 (1009)
+.|+-.|+||||||++|.
T Consensus 2 GlilI~GptGSGKTTll~ 19 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLA 19 (198)
T ss_pred cEEEEECCCCCCHHHHHH
Confidence 578889999999999983
No 106
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=65.33 E-value=27 Score=39.03 Aligned_cols=80 Identities=25% Similarity=0.409 Sum_probs=48.1
Q ss_pred EEeceeeCCCCChHhHHhhh-HHHHHHHhc---CCc--eeEEeecccCCCCceeecCC-------------CCCCccccc
Q 001820 438 FSFNKVYGPSATQAEVFSDM-QPLIRSVLD---GYN--VCIFAYGQTGSGKTYTMTGP-------------RELTEKSQG 498 (1009)
Q Consensus 438 F~FD~VF~~~atQeeVF~~v-~pLV~svLd---G~N--~~IfAYGqTGSGKTyTM~G~-------------~~~~~~~~G 498 (1009)
.++..|=+-+..-++|-+.+ -||.+.=|- |.. -.|+.||+.|+|||-..-.- .+....-.|
T Consensus 152 vsy~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~firvvgsefvqkylg 231 (408)
T KOG0727|consen 152 VSYADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLG 231 (408)
T ss_pred ccccccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchheeeeccHHHHHHHhc
Confidence 34444555555556666665 366554331 333 24899999999997433110 001123347
Q ss_pred hhhHHHHHHHHHHHHhccc
Q 001820 499 VNYRALSDLFLIAEQRKDI 517 (1009)
Q Consensus 499 IipRal~dLF~~~~~~~~~ 517 (1009)
--||.++|+|....+....
T Consensus 232 egprmvrdvfrlakenaps 250 (408)
T KOG0727|consen 232 EGPRMVRDVFRLAKENAPS 250 (408)
T ss_pred cCcHHHHHHHHHHhccCCc
Confidence 7799999999998776554
No 107
>PF12846 AAA_10: AAA-like domain
Probab=65.33 E-value=2.1 Score=46.60 Aligned_cols=19 Identities=42% Similarity=0.574 Sum_probs=16.0
Q ss_pred ceeEEeecccCCCCceeec
Q 001820 469 NVCIFAYGQTGSGKTYTMT 487 (1009)
Q Consensus 469 N~~IfAYGqTGSGKTyTM~ 487 (1009)
|..++..|.||||||++|.
T Consensus 1 n~h~~i~G~tGsGKT~~~~ 19 (304)
T PF12846_consen 1 NPHTLILGKTGSGKTTLLK 19 (304)
T ss_pred CCeEEEECCCCCcHHHHHH
Confidence 4567889999999999883
No 108
>COG5008 PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=65.12 E-value=4.1 Score=45.65 Aligned_cols=34 Identities=26% Similarity=0.462 Sum_probs=27.4
Q ss_pred Hhh--hHHHHHHHhcCCceeEEeecccCCCCceeec
Q 001820 454 FSD--MQPLIRSVLDGYNVCIFAYGQTGSGKTYTMT 487 (1009)
Q Consensus 454 F~~--v~pLV~svLdG~N~~IfAYGqTGSGKTyTM~ 487 (1009)
|++ +-+++..+.--.-+.|+..|.|||||+.||-
T Consensus 110 ~eeL~LPevlk~la~~kRGLviiVGaTGSGKSTtmA 145 (375)
T COG5008 110 FEELKLPEVLKDLALAKRGLVIIVGATGSGKSTTMA 145 (375)
T ss_pred HHhcCCcHHHHHhhcccCceEEEECCCCCCchhhHH
Confidence 455 3567777777788889999999999999983
No 109
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=64.59 E-value=3.3 Score=48.45 Aligned_cols=20 Identities=30% Similarity=0.277 Sum_probs=16.9
Q ss_pred CceeEEeecccCCCCceeec
Q 001820 468 YNVCIFAYGQTGSGKTYTMT 487 (1009)
Q Consensus 468 ~N~~IfAYGqTGSGKTyTM~ 487 (1009)
.++.|+..|+||||||+||.
T Consensus 148 ~~GlilI~G~TGSGKTT~l~ 167 (372)
T TIGR02525 148 AAGLGLICGETGSGKSTLAA 167 (372)
T ss_pred cCCEEEEECCCCCCHHHHHH
Confidence 45567889999999999993
No 110
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=64.16 E-value=3.5 Score=45.86 Aligned_cols=29 Identities=38% Similarity=0.517 Sum_probs=22.2
Q ss_pred HHHHHHhcCCceeEEeecccCCCCceeec
Q 001820 459 PLIRSVLDGYNVCIFAYGQTGSGKTYTMT 487 (1009)
Q Consensus 459 pLV~svLdG~N~~IfAYGqTGSGKTyTM~ 487 (1009)
..+..++..-.+.|+-.|.||||||.||.
T Consensus 70 ~~l~~~~~~~~GlilisG~tGSGKTT~l~ 98 (264)
T cd01129 70 EIFRKLLEKPHGIILVTGPTGSGKTTTLY 98 (264)
T ss_pred HHHHHHHhcCCCEEEEECCCCCcHHHHHH
Confidence 34555665556678888999999999994
No 111
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=63.93 E-value=3.3 Score=48.18 Aligned_cols=21 Identities=33% Similarity=0.474 Sum_probs=18.1
Q ss_pred CCceeEEeecccCCCCceeec
Q 001820 467 GYNVCIFAYGQTGSGKTYTMT 487 (1009)
Q Consensus 467 G~N~~IfAYGqTGSGKTyTM~ 487 (1009)
--.+.|+..|+||||||.||.
T Consensus 132 ~~~glilI~GpTGSGKTTtL~ 152 (358)
T TIGR02524 132 PQEGIVFITGATGSGKSTLLA 152 (358)
T ss_pred ccCCEEEEECCCCCCHHHHHH
Confidence 346889999999999999993
No 112
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=63.08 E-value=3.5 Score=43.67 Aligned_cols=28 Identities=25% Similarity=0.398 Sum_probs=20.6
Q ss_pred HHHHHHhcCCceeEEeecccCCCCceee
Q 001820 459 PLIRSVLDGYNVCIFAYGQTGSGKTYTM 486 (1009)
Q Consensus 459 pLV~svLdG~N~~IfAYGqTGSGKTyTM 486 (1009)
..|..++...+-.++..|..||||||+|
T Consensus 8 ~a~~~~l~~~~~~~~l~G~aGtGKT~~l 35 (196)
T PF13604_consen 8 EAVRAILTSGDRVSVLQGPAGTGKTTLL 35 (196)
T ss_dssp HHHHHHHHCTCSEEEEEESTTSTHHHHH
T ss_pred HHHHHHHhcCCeEEEEEECCCCCHHHHH
Confidence 3556666555555566899999999998
No 113
>KOG3631 consensus Alpha-parvin and related focal adhesion proteins [Cytoskeleton]
Probab=62.98 E-value=27 Score=39.09 Aligned_cols=111 Identities=19% Similarity=0.234 Sum_probs=72.9
Q ss_pred HHHHHHHHHhHHHHHHHHHHhhhhhhcCCCCCCCChHHHHHHcccchHHHHHHHhhcCCCcCceecCCCccccCCccccc
Q 001820 33 SRKAEEAASRRYEAAGWLRKMVGVVAARDLPAEPSEEEFRLGLRSGIILCNVINKVQPGAVPKVVESPDTVLVPDGAALS 112 (1009)
Q Consensus 33 ~r~a~~~a~r~~ea~~WL~~~lg~~~~~~lp~~~~ee~f~~~LrDGvvLCkL~N~l~PGsV~Ki~~~~~~~~~~~g~~~~ 112 (1009)
+|+..+.+.-..-+..||.+.+ . +...-.-.+.+-|-||.||-+|..++.-- |+.... -+++
T Consensus 82 sr~DpK~~el~kvLi~WiN~~L---~----~erIvVr~LeEDlfDGqilqkL~ekL~~~---klev~e--------vtqs 143 (365)
T KOG3631|consen 82 SRKDPKFEELVKVLIDWINDVL---V----PERIVVRSLEEDLFDGQILQKLFEKLAAL---KLEVAE--------VTQS 143 (365)
T ss_pred cccChhHHHHHHHHHHHHHHhh---c----chhhhHHhhHHhhhhhHHHHHHHHHHHhh---hccchh--------hhhh
Confidence 3333333333344556666553 1 22234457889999999999999999632 221111 0124
Q ss_pred hhhHHHHHHHHHHHH-HhcCCCCccC---CchhcCCChhHHHHHHHHHHhccc
Q 001820 113 AYQYFENVRNFLVAV-QEMGLPTFEA---SDLEQGGKSARVVNCVLALKSYGE 161 (1009)
Q Consensus 113 ~f~~~ENI~~FL~ac-~~lGvp~Fet---~DL~egkn~~kVv~cL~aL~~~~e 161 (1009)
..-+..-+.--|.++ +.+++|..++ .|+.-+||+..++.-|.+|+.|+.
T Consensus 144 e~~QkqKLq~Vleavnr~L~~~~~q~kWsvdsIh~Kdl~ailhLLVaLa~~fr 196 (365)
T KOG3631|consen 144 EIGQKQKLQTVLEAVNRSLQLPEWQAKWSVDSIHNKDLVAILHLLVALAKHFR 196 (365)
T ss_pred hHHHHHHHHHHHHHHHHHhcCchhhhccchhhhccchHHHHHHHHHHHHHHcC
Confidence 555667777788888 7899997543 578889999999999999986643
No 114
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=62.82 E-value=4.5 Score=43.98 Aligned_cols=22 Identities=32% Similarity=0.446 Sum_probs=17.5
Q ss_pred hcCCceeEEeecccCCCCceee
Q 001820 465 LDGYNVCIFAYGQTGSGKTYTM 486 (1009)
Q Consensus 465 LdG~N~~IfAYGqTGSGKTyTM 486 (1009)
+......++-+|++|+|||+++
T Consensus 39 ~~~~~~~~~l~G~~G~GKTtl~ 60 (269)
T TIGR03015 39 LSQREGFILITGEVGAGKTTLI 60 (269)
T ss_pred HhcCCCEEEEEcCCCCCHHHHH
Confidence 4444557888999999999887
No 115
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=61.69 E-value=4.6 Score=42.23 Aligned_cols=19 Identities=32% Similarity=0.525 Sum_probs=15.8
Q ss_pred eeEEeecccCCCCceeecC
Q 001820 470 VCIFAYGQTGSGKTYTMTG 488 (1009)
Q Consensus 470 ~~IfAYGqTGSGKTyTM~G 488 (1009)
-.|+-||++|+||||...+
T Consensus 48 ~~l~l~G~~G~GKThLa~a 66 (178)
T PF01695_consen 48 ENLILYGPPGTGKTHLAVA 66 (178)
T ss_dssp -EEEEEESTTSSHHHHHHH
T ss_pred eEEEEEhhHhHHHHHHHHH
Confidence 4588999999999999854
No 116
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=61.22 E-value=3.2 Score=45.64 Aligned_cols=29 Identities=38% Similarity=0.573 Sum_probs=19.7
Q ss_pred hHHHHHHHhcCCceeEEeecccCCCCceee
Q 001820 457 MQPLIRSVLDGYNVCIFAYGQTGSGKTYTM 486 (1009)
Q Consensus 457 v~pLV~svLdG~N~~IfAYGqTGSGKTyTM 486 (1009)
+..++...+.+ .+.|+..|.||||||.+|
T Consensus 116 ~~~~l~~~v~~-~~~ili~G~tGSGKTT~l 144 (270)
T PF00437_consen 116 IAEFLRSAVRG-RGNILISGPTGSGKTTLL 144 (270)
T ss_dssp HHHHHHHCHHT-TEEEEEEESTTSSHHHHH
T ss_pred HHHHHhhcccc-ceEEEEECCCccccchHH
Confidence 44444444433 445566799999999998
No 117
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=60.52 E-value=3.7 Score=41.10 Aligned_cols=16 Identities=31% Similarity=0.501 Sum_probs=12.9
Q ss_pred eEEeecccCCCCceee
Q 001820 471 CIFAYGQTGSGKTYTM 486 (1009)
Q Consensus 471 ~IfAYGqTGSGKTyTM 486 (1009)
.+--.|.||+||||+-
T Consensus 55 VlSfHG~tGtGKn~v~ 70 (127)
T PF06309_consen 55 VLSFHGWTGTGKNFVS 70 (127)
T ss_pred EEEeecCCCCcHHHHH
Confidence 4556799999999974
No 118
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=60.42 E-value=5.3 Score=44.54 Aligned_cols=40 Identities=25% Similarity=0.223 Sum_probs=27.1
Q ss_pred CCChHhHHhhhHHHHHHHhcC--CceeEEeecccCCCCceee
Q 001820 447 SATQAEVFSDMQPLIRSVLDG--YNVCIFAYGQTGSGKTYTM 486 (1009)
Q Consensus 447 ~atQeeVF~~v~pLV~svLdG--~N~~IfAYGqTGSGKTyTM 486 (1009)
-..|+++.+.+..++.....+ .-..++-||+.|+|||+..
T Consensus 6 ~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la 47 (305)
T TIGR00635 6 FIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLA 47 (305)
T ss_pred HcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHH
Confidence 345777777776666554332 2234677999999999877
No 119
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=59.89 E-value=12 Score=47.05 Aligned_cols=93 Identities=19% Similarity=0.256 Sum_probs=54.0
Q ss_pred EEeceeeCCCCChHhHHhhhHHHHHHHhcCCceeEEeecccCCCCceeecCCCCCCccccchh----hHHHHHHHHHHHH
Q 001820 438 FSFNKVYGPSATQAEVFSDMQPLIRSVLDGYNVCIFAYGQTGSGKTYTMTGPRELTEKSQGVN----YRALSDLFLIAEQ 513 (1009)
Q Consensus 438 F~FD~VF~~~atQeeVF~~v~pLV~svLdG~N~~IfAYGqTGSGKTyTM~G~~~~~~~~~GIi----pRal~dLF~~~~~ 513 (1009)
|....=|.|.-.|..-|.. +++.+-+|...- ..+|.|||||||||-.--.. ...+-|+ -....+|+..+..
T Consensus 2 f~~~~~~~~~~~Q~~ai~~---l~~~~~~~~~~~-~l~Gvtgs~kt~~~a~~~~~-~~~p~Lvi~~n~~~A~ql~~el~~ 76 (655)
T TIGR00631 2 FKLHSPFQPAGDQPKAIAK---LVEGLTDGEKHQ-TLLGVTGSGKTFTMANVIAQ-VNRPTLVIAHNKTLAAQLYNEFKE 76 (655)
T ss_pred ceeccCCCCChHHHHHHHH---HHHhhhcCCCcE-EEECCCCcHHHHHHHHHHHH-hCCCEEEEECCHHHHHHHHHHHHH
Confidence 4444557788888877665 445555664222 37899999999999651100 0001111 1123455555544
Q ss_pred hccceeEEEEEEEEEEecceee
Q 001820 514 RKDIFRYDVAVQMLEIYNEQVR 535 (1009)
Q Consensus 514 ~~~~~~y~V~vS~lEIYnE~V~ 535 (1009)
.-........|||+.-|.-..|
T Consensus 77 f~p~~~V~~f~sy~d~y~pe~y 98 (655)
T TIGR00631 77 FFPENAVEYFVSYYDYYQPEAY 98 (655)
T ss_pred hCCCCeEEEEeeecccCCcccc
Confidence 4333347788999999965543
No 120
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=59.01 E-value=5.2 Score=45.39 Aligned_cols=28 Identities=32% Similarity=0.427 Sum_probs=20.5
Q ss_pred HHHHHHHhcCCceeEEeecccCCCCceee
Q 001820 458 QPLIRSVLDGYNVCIFAYGQTGSGKTYTM 486 (1009)
Q Consensus 458 ~pLV~svLdG~N~~IfAYGqTGSGKTyTM 486 (1009)
..++..++.+ ...|+-.|.||||||++|
T Consensus 122 ~~~L~~~v~~-~~~ilI~G~tGSGKTTll 149 (299)
T TIGR02782 122 RDVLREAVLA-RKNILVVGGTGSGKTTLA 149 (299)
T ss_pred HHHHHHHHHc-CCeEEEECCCCCCHHHHH
Confidence 3455555554 356778899999999998
No 121
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=58.88 E-value=2.4 Score=53.13 Aligned_cols=87 Identities=41% Similarity=0.698 Sum_probs=57.7
Q ss_pred ceeEEeceeeCCCCChHhHHhhhHHHHHHHhcCCceeEEeecccCCCCceeecCCCCCCccccchhhHHHHHHHHHHHHh
Q 001820 435 WKSFSFNKVYGPSATQAEVFSDMQPLIRSVLDGYNVCIFAYGQTGSGKTYTMTGPRELTEKSQGVNYRALSDLFLIAEQR 514 (1009)
Q Consensus 435 ~k~F~FD~VF~~~atQeeVF~~v~pLV~svLdG~N~~IfAYGqTGSGKTyTM~G~~~~~~~~~GIipRal~dLF~~~~~~ 514 (1009)
...+.|+.+......+.--+....+.+..++++++.. +|++|+|.+.. ...|+.-+....++......
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~ 92 (670)
T KOG0239|consen 25 KKRFELARVYSPSVGQPSLFSDVQPFVQSALEGLNVK--------AGLTYTMEGSN----QPGGLLARLFKELIDLANSD 92 (670)
T ss_pred ccccCccccccccccccccCCccccchhhhhhhhhcc--------hhhhhhhhhhc----CcchhHHHhhhhcccccccC
Confidence 4567788887776666666666666677777777765 89999999943 33456555555554433222
Q ss_pred ccceeEEEEEEEEEEecceeeecccC
Q 001820 515 KDIFRYDVAVQMLEIYNEQVRDLLVT 540 (1009)
Q Consensus 515 ~~~~~y~V~vS~lEIYnE~V~DLL~~ 540 (1009)
.. ...++.|++.+.|++..
T Consensus 93 ~~-------~~~~~~~~~~~~~~~~~ 111 (670)
T KOG0239|consen 93 KT-------SNVVEAYNERLRDLLSE 111 (670)
T ss_pred CC-------chhHHHHHHHHhhhccc
Confidence 22 11678899999999854
No 122
>PF15372 DUF4600: Domain of unknown function (DUF4600)
Probab=58.04 E-value=79 Score=31.97 Aligned_cols=90 Identities=18% Similarity=0.276 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH------------------HHHHHHHHHHHHhhhhHHHhh----HHH
Q 001820 312 EELKSQSLKQKMIFDQQHEDIQELKHTLHTTKAG------------------IQFMQMKFHEEFSNLGIHIHG----LAH 369 (1009)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~k~~------------------~~~~~~~~~~~~~~l~~~~~~----l~~ 369 (1009)
.|-+-..+.|.++.++++++|.-|+..+..++.. +..+-.+..++-..|..+++. |..
T Consensus 4 nEWktRYEtQ~E~N~QLekqi~~l~~kiek~r~n~~drl~siR~ye~Ms~~~l~~llkqLEkeK~~Le~qlk~~e~rLeQ 83 (129)
T PF15372_consen 4 NEWKTRYETQLELNDQLEKQIIILREKIEKIRGNPSDRLSSIRRYEQMSVESLNQLLKQLEKEKRSLENQLKDYEWRLEQ 83 (129)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccccHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677778888888888888887777654421 111112223333344444443 345
Q ss_pred HHhhhhHHHHHHhhhhhhhhccCCCeEEEEEe
Q 001820 370 AASGYHRVLEENRKLYNQVQDLKGSIRVYCRV 401 (1009)
Q Consensus 370 ~~~~~~~~~~e~r~l~n~~qelkGnIrV~~RV 401 (1009)
.+.+||++-.|||....++....+...|.-|.
T Consensus 84 EsKAyhk~ndeRr~ylaEi~~~s~~~~~~k~q 115 (129)
T PF15372_consen 84 ESKAYHKANDERRQYLAEISQTSALHQVSKRQ 115 (129)
T ss_pred HHHHHHHHhHHHHHHHHHHHhhhhhHhhhccc
Confidence 67899999999999999998887766665444
No 123
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=57.57 E-value=3.6 Score=39.07 Aligned_cols=16 Identities=38% Similarity=0.522 Sum_probs=14.2
Q ss_pred eEEeecccCCCCceee
Q 001820 471 CIFAYGQTGSGKTYTM 486 (1009)
Q Consensus 471 ~IfAYGqTGSGKTyTM 486 (1009)
+|+-.|++|||||+..
T Consensus 1 vI~I~G~~gsGKST~a 16 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLA 16 (121)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred CEEEECCCCCCHHHHH
Confidence 5889999999999876
No 124
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=57.53 E-value=3.3 Score=44.04 Aligned_cols=17 Identities=47% Similarity=0.587 Sum_probs=14.9
Q ss_pred eEEeecccCCCCceeec
Q 001820 471 CIFAYGQTGSGKTYTMT 487 (1009)
Q Consensus 471 ~IfAYGqTGSGKTyTM~ 487 (1009)
.|+-.|+||+|||.|+.
T Consensus 3 vi~lvGptGvGKTTt~a 19 (196)
T PF00448_consen 3 VIALVGPTGVGKTTTIA 19 (196)
T ss_dssp EEEEEESTTSSHHHHHH
T ss_pred EEEEECCCCCchHhHHH
Confidence 47788999999999983
No 125
>PF13479 AAA_24: AAA domain
Probab=57.09 E-value=4.4 Score=43.35 Aligned_cols=20 Identities=40% Similarity=0.619 Sum_probs=17.0
Q ss_pred ceeEEeecccCCCCceeecC
Q 001820 469 NVCIFAYGQTGSGKTYTMTG 488 (1009)
Q Consensus 469 N~~IfAYGqTGSGKTyTM~G 488 (1009)
+..++.||++|+|||++...
T Consensus 3 ~~~~lIyG~~G~GKTt~a~~ 22 (213)
T PF13479_consen 3 PIKILIYGPPGSGKTTLAAS 22 (213)
T ss_pred ceEEEEECCCCCCHHHHHHh
Confidence 46788999999999998754
No 126
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=56.71 E-value=4.3 Score=48.73 Aligned_cols=70 Identities=31% Similarity=0.376 Sum_probs=41.4
Q ss_pred HHHHhcCCceeEEeecccCCCCceeecCCC---------C-CCccccchhhHHH-----HHHHHHHHHhccceeEEEEEE
Q 001820 461 IRSVLDGYNVCIFAYGQTGSGKTYTMTGPR---------E-LTEKSQGVNYRAL-----SDLFLIAEQRKDIFRYDVAVQ 525 (1009)
Q Consensus 461 V~svLdG~N~~IfAYGqTGSGKTyTM~G~~---------~-~~~~~~GIipRal-----~dLF~~~~~~~~~~~y~V~vS 525 (1009)
|..+.+|... +|++|||||||+...+|- . ......|..|+++ +.|-..+..+...+.|.-.+-
T Consensus 105 ip~i~~Grdl--~acAqTGsGKT~aFLiPii~~~~~~~~~~~~~~~~~~~P~~lIlapTReL~~Qi~nea~k~~~~s~~~ 182 (482)
T KOG0335|consen 105 IPIISGGRDL--MACAQTGSGKTAAFLIPIISYLLDEGPEDRGESGGGVYPRALILAPTRELVDQIYNEARKFSYLSGMK 182 (482)
T ss_pred cceeecCCce--EEEccCCCcchHHHHHHHHHHHHhcCcccCcccCCCCCCceEEEeCcHHHhhHHHHHHHhhcccccce
Confidence 4555667765 899999999999987741 0 0111111223331 333333333334467778888
Q ss_pred EEEEecc
Q 001820 526 MLEIYNE 532 (1009)
Q Consensus 526 ~lEIYnE 532 (1009)
.+.+|+.
T Consensus 183 ~~~~ygg 189 (482)
T KOG0335|consen 183 SVVVYGG 189 (482)
T ss_pred eeeeeCC
Confidence 8899965
No 127
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=56.48 E-value=8.1 Score=45.55 Aligned_cols=19 Identities=37% Similarity=0.510 Sum_probs=16.6
Q ss_pred ceeEEeecccCCCCceeec
Q 001820 469 NVCIFAYGQTGSGKTYTMT 487 (1009)
Q Consensus 469 N~~IfAYGqTGSGKTyTM~ 487 (1009)
...|+.+|+||+|||+|+.
T Consensus 174 ~~vi~lvGptGvGKTTT~a 192 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIA 192 (388)
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 4578899999999999983
No 128
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=55.94 E-value=8.8 Score=43.09 Aligned_cols=18 Identities=44% Similarity=0.540 Sum_probs=14.7
Q ss_pred eEEeecccCCCCceeecC
Q 001820 471 CIFAYGQTGSGKTYTMTG 488 (1009)
Q Consensus 471 ~IfAYGqTGSGKTyTM~G 488 (1009)
.|.-.|+||+|||+|+..
T Consensus 196 vi~~vGptGvGKTTt~~k 213 (282)
T TIGR03499 196 VIALVGPTGVGKTTTLAK 213 (282)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 555669999999999844
No 129
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=54.89 E-value=4.1 Score=38.74 Aligned_cols=15 Identities=40% Similarity=0.569 Sum_probs=13.4
Q ss_pred EEeecccCCCCceee
Q 001820 472 IFAYGQTGSGKTYTM 486 (1009)
Q Consensus 472 IfAYGqTGSGKTyTM 486 (1009)
|+-||+.|+|||+..
T Consensus 1 ill~G~~G~GKT~l~ 15 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLA 15 (132)
T ss_dssp EEEESSTTSSHHHHH
T ss_pred CEEECcCCCCeeHHH
Confidence 578999999999886
No 130
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=54.51 E-value=7.4 Score=45.20 Aligned_cols=37 Identities=24% Similarity=0.481 Sum_probs=27.0
Q ss_pred CCChHhHHhhhHHHHHHHhcCCceeEEeecccCCCCceee
Q 001820 447 SATQAEVFSDMQPLIRSVLDGYNVCIFAYGQTGSGKTYTM 486 (1009)
Q Consensus 447 ~atQeeVF~~v~pLV~svLdG~N~~IfAYGqTGSGKTyTM 486 (1009)
+..|..+|+.|-..+.. .....+|.-|.-|+||||.+
T Consensus 3 n~eQ~~~~~~v~~~~~~---~~~~~~fv~G~~GtGKs~l~ 39 (364)
T PF05970_consen 3 NEEQRRVFDTVIEAIEN---EEGLNFFVTGPAGTGKSFLI 39 (364)
T ss_pred CHHHHHHHHHHHHHHHc---cCCcEEEEEcCCCCChhHHH
Confidence 35689999986333332 34456788999999999987
No 131
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=54.47 E-value=5.8 Score=41.30 Aligned_cols=27 Identities=33% Similarity=0.485 Sum_probs=17.5
Q ss_pred HHHHHhcCCceeEEeecccCCCCceeec
Q 001820 460 LIRSVLDGYNVCIFAYGQTGSGKTYTMT 487 (1009)
Q Consensus 460 LV~svLdG~N~~IfAYGqTGSGKTyTM~ 487 (1009)
.|..++.--. ..+..|+.|||||+|+.
T Consensus 9 Ai~~~~~~~~-~~~i~GpPGTGKT~~l~ 35 (236)
T PF13086_consen 9 AIQSALSSNG-ITLIQGPPGTGKTTTLA 35 (236)
T ss_dssp HHHHHCTSSE--EEEE-STTSSHHHHHH
T ss_pred HHHHHHcCCC-CEEEECCCCCChHHHHH
Confidence 4555554333 45668999999999884
No 132
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=54.26 E-value=1e+02 Score=34.71 Aligned_cols=21 Identities=24% Similarity=0.349 Sum_probs=15.3
Q ss_pred hhhhhhccCCCeEEEEEeCCC
Q 001820 384 LYNQVQDLKGSIRVYCRVRPF 404 (1009)
Q Consensus 384 l~n~~qelkGnIrV~~RVRP~ 404 (1009)
...++...-|.-+|.|.+.|-
T Consensus 70 yvgev~k~m~k~kVLVKvhpe 90 (404)
T KOG0728|consen 70 YVGEVVKAMGKKKVLVKVHPE 90 (404)
T ss_pred hHHHHHHhcCcceEEEEEcCC
Confidence 334555566888999999994
No 133
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=53.44 E-value=7.4 Score=40.60 Aligned_cols=30 Identities=27% Similarity=0.365 Sum_probs=20.2
Q ss_pred hHHHHHHHhcCCceeEEeecccCCCCceeec
Q 001820 457 MQPLIRSVLDGYNVCIFAYGQTGSGKTYTMT 487 (1009)
Q Consensus 457 v~pLV~svLdG~N~~IfAYGqTGSGKTyTM~ 487 (1009)
+.+++..++.. ...+.-.|+||||||.+|.
T Consensus 14 ~~~~l~~~v~~-g~~i~I~G~tGSGKTTll~ 43 (186)
T cd01130 14 QAAYLWLAVEA-RKNILISGGTGSGKTTLLN 43 (186)
T ss_pred HHHHHHHHHhC-CCEEEEECCCCCCHHHHHH
Confidence 34555555543 2346667999999999873
No 134
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=53.40 E-value=8.1 Score=38.49 Aligned_cols=28 Identities=32% Similarity=0.368 Sum_probs=18.7
Q ss_pred HHHHHhcCCceeEEeecccCCCCceeecC
Q 001820 460 LIRSVLDGYNVCIFAYGQTGSGKTYTMTG 488 (1009)
Q Consensus 460 LV~svLdG~N~~IfAYGqTGSGKTyTM~G 488 (1009)
++..++++. .-++..|+||||||.++..
T Consensus 16 ~~~~~~~~~-~~~~i~~~~GsGKT~~~~~ 43 (201)
T smart00487 16 AIEALLSGL-RDVILAAPTGSGKTLAALL 43 (201)
T ss_pred HHHHHHcCC-CcEEEECCCCCchhHHHHH
Confidence 344445442 3446678999999998855
No 135
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=52.34 E-value=7.2 Score=45.14 Aligned_cols=28 Identities=32% Similarity=0.412 Sum_probs=21.9
Q ss_pred HHHHHHHhcCCceeEEeecccCCCCceee
Q 001820 458 QPLIRSVLDGYNVCIFAYGQTGSGKTYTM 486 (1009)
Q Consensus 458 ~pLV~svLdG~N~~IfAYGqTGSGKTyTM 486 (1009)
..++..++.+. +.|+-.|.||||||+++
T Consensus 163 a~~L~~av~~r-~NILisGGTGSGKTTlL 190 (355)
T COG4962 163 AKFLRRAVGIR-CNILISGGTGSGKTTLL 190 (355)
T ss_pred HHHHHHHHhhc-eeEEEeCCCCCCHHHHH
Confidence 45555666665 77889999999999987
No 136
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=51.68 E-value=9.7 Score=41.12 Aligned_cols=20 Identities=30% Similarity=0.501 Sum_probs=14.4
Q ss_pred CceeEEeecccCCCCceeec
Q 001820 468 YNVCIFAYGQTGSGKTYTMT 487 (1009)
Q Consensus 468 ~N~~IfAYGqTGSGKTyTM~ 487 (1009)
.+-.+++.|+.||||||.-.
T Consensus 18 ~~~~v~~~G~AGTGKT~LA~ 37 (205)
T PF02562_consen 18 NNDLVIVNGPAGTGKTFLAL 37 (205)
T ss_dssp H-SEEEEE--TTSSTTHHHH
T ss_pred hCCeEEEECCCCCcHHHHHH
Confidence 55689999999999998763
No 137
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=51.37 E-value=6.9 Score=45.02 Aligned_cols=27 Identities=44% Similarity=0.569 Sum_probs=19.2
Q ss_pred HHHHHHhcCCceeEEeecccCCCCceee
Q 001820 459 PLIRSVLDGYNVCIFAYGQTGSGKTYTM 486 (1009)
Q Consensus 459 pLV~svLdG~N~~IfAYGqTGSGKTyTM 486 (1009)
.++..++.+. ..|+-.|.||||||++|
T Consensus 135 ~~L~~~v~~~-~nilI~G~tGSGKTTll 161 (323)
T PRK13833 135 SVIRSAIDSR-LNIVISGGTGSGKTTLA 161 (323)
T ss_pred HHHHHHHHcC-CeEEEECCCCCCHHHHH
Confidence 4455555432 34778899999999998
No 138
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=51.22 E-value=7.1 Score=43.80 Aligned_cols=22 Identities=23% Similarity=0.304 Sum_probs=17.0
Q ss_pred cCC-ceeEEeecccCCCCceeec
Q 001820 466 DGY-NVCIFAYGQTGSGKTYTMT 487 (1009)
Q Consensus 466 dG~-N~~IfAYGqTGSGKTyTM~ 487 (1009)
.|. ...++-||++|+|||+.+.
T Consensus 39 ~~~~~~~lll~G~~G~GKT~la~ 61 (316)
T PHA02544 39 KGRIPNMLLHSPSPGTGKTTVAK 61 (316)
T ss_pred cCCCCeEEEeeCcCCCCHHHHHH
Confidence 453 4567779999999999873
No 139
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=51.12 E-value=15 Score=40.52 Aligned_cols=42 Identities=26% Similarity=0.322 Sum_probs=29.7
Q ss_pred eCCCCChHhHHhhhHHHHHHHhc-C-CceeEEeecccCCCCcee
Q 001820 444 YGPSATQAEVFSDMQPLIRSVLD-G-YNVCIFAYGQTGSGKTYT 485 (1009)
Q Consensus 444 F~~~atQeeVF~~v~pLV~svLd-G-~N~~IfAYGqTGSGKTyT 485 (1009)
|++-..|+.+-.....+++.+.. | .=..++-||+.|.|||..
T Consensus 23 L~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTL 66 (233)
T PF05496_consen 23 LDEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTL 66 (233)
T ss_dssp CCCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHH
T ss_pred HHHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHH
Confidence 45556789999988888988864 3 233578899999999754
No 140
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=50.71 E-value=23 Score=40.19 Aligned_cols=29 Identities=31% Similarity=0.447 Sum_probs=21.4
Q ss_pred hHHHHHHHhcCCceeEEeecccCCCCceee
Q 001820 457 MQPLIRSVLDGYNVCIFAYGQTGSGKTYTM 486 (1009)
Q Consensus 457 v~pLV~svLdG~N~~IfAYGqTGSGKTyTM 486 (1009)
+.+++..++.+. ..|.-.|.||||||..|
T Consensus 133 ~~~~l~~~v~~~-~~ili~G~tGsGKTTll 161 (308)
T TIGR02788 133 IKEFLRLAIASR-KNIIISGGTGSGKTTFL 161 (308)
T ss_pred HHHHHHHHhhCC-CEEEEECCCCCCHHHHH
Confidence 566777766544 35556799999999977
No 141
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=50.40 E-value=8.1 Score=44.83 Aligned_cols=31 Identities=26% Similarity=0.499 Sum_probs=21.1
Q ss_pred hHHHHHHHhcCCceeEEeecccCCCCceeecC
Q 001820 457 MQPLIRSVLDGYNVCIFAYGQTGSGKTYTMTG 488 (1009)
Q Consensus 457 v~pLV~svLdG~N~~IfAYGqTGSGKTyTM~G 488 (1009)
+..++..++.+ ...|+..|.||||||++|..
T Consensus 151 ~~~~l~~~v~~-~~nilI~G~tGSGKTTll~a 181 (344)
T PRK13851 151 LEAFLHACVVG-RLTMLLCGPTGSGKTTMSKT 181 (344)
T ss_pred HHHHHHHHHHc-CCeEEEECCCCccHHHHHHH
Confidence 44555555542 33467789999999999843
No 142
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=50.40 E-value=11 Score=43.06 Aligned_cols=27 Identities=30% Similarity=0.422 Sum_probs=18.5
Q ss_pred HHHHHhcC-CceeEEeecccCCCCceee
Q 001820 460 LIRSVLDG-YNVCIFAYGQTGSGKTYTM 486 (1009)
Q Consensus 460 LV~svLdG-~N~~IfAYGqTGSGKTyTM 486 (1009)
++...+.+ ----.+-||+.|+|||.|.
T Consensus 47 ~L~~a~~~~~lp~~LFyGPpGTGKTSta 74 (346)
T KOG0989|consen 47 VLKNALLRRILPHYLFYGPPGTGKTSTA 74 (346)
T ss_pred HHHHHHhhcCCceEEeeCCCCCcHhHHH
Confidence 33333333 3345678999999999997
No 143
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=50.26 E-value=8.3 Score=44.45 Aligned_cols=29 Identities=21% Similarity=0.247 Sum_probs=20.6
Q ss_pred hHHHHHHHhcCCceeEEeecccCCCCceee
Q 001820 457 MQPLIRSVLDGYNVCIFAYGQTGSGKTYTM 486 (1009)
Q Consensus 457 v~pLV~svLdG~N~~IfAYGqTGSGKTyTM 486 (1009)
+..++..++.+. ..|+..|.||||||++|
T Consensus 149 ~~~~L~~~v~~~-~nili~G~tgSGKTTll 177 (332)
T PRK13900 149 IKEFLEHAVISK-KNIIISGGTSTGKTTFT 177 (332)
T ss_pred HHHHHHHHHHcC-CcEEEECCCCCCHHHHH
Confidence 445565555443 34667899999999998
No 144
>PTZ00424 helicase 45; Provisional
Probab=49.77 E-value=7.9 Score=44.78 Aligned_cols=26 Identities=42% Similarity=0.704 Sum_probs=20.9
Q ss_pred HHHHHHhcCCceeEEeecccCCCCceee
Q 001820 459 PLIRSVLDGYNVCIFAYGQTGSGKTYTM 486 (1009)
Q Consensus 459 pLV~svLdG~N~~IfAYGqTGSGKTyTM 486 (1009)
..+..+++|.|+. ..++||||||.+.
T Consensus 57 ~ai~~i~~~~d~i--i~apTGsGKT~~~ 82 (401)
T PTZ00424 57 RGIKPILDGYDTI--GQAQSGTGKTATF 82 (401)
T ss_pred HHHHHHhCCCCEE--EECCCCChHHHHH
Confidence 5677788999864 5689999999765
No 145
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=49.14 E-value=9.2 Score=45.51 Aligned_cols=25 Identities=36% Similarity=0.574 Sum_probs=19.9
Q ss_pred HHHHHHhcCCceeEEeecccCCCCcee
Q 001820 459 PLIRSVLDGYNVCIFAYGQTGSGKTYT 485 (1009)
Q Consensus 459 pLV~svLdG~N~~IfAYGqTGSGKTyT 485 (1009)
..+..+++|.| +++.++||||||.+
T Consensus 33 ~ai~~~l~g~d--vi~~a~TGsGKT~a 57 (460)
T PRK11776 33 QSLPAILAGKD--VIAQAKTGSGKTAA 57 (460)
T ss_pred HHHHHHhcCCC--EEEECCCCCcHHHH
Confidence 45667788988 56677999999976
No 146
>PRK13342 recombination factor protein RarA; Reviewed
Probab=49.00 E-value=8.8 Score=45.29 Aligned_cols=39 Identities=26% Similarity=0.395 Sum_probs=24.6
Q ss_pred ChHhHHhhhHHHHHHHhcCCceeEEeecccCCCCceeec
Q 001820 449 TQAEVFSDMQPLIRSVLDGYNVCIFAYGQTGSGKTYTMT 487 (1009)
Q Consensus 449 tQeeVF~~v~pLV~svLdG~N~~IfAYGqTGSGKTyTM~ 487 (1009)
.|+.+...-..+...+-.+.-..++-||++|+|||++..
T Consensus 16 Gq~~~v~~~~~L~~~i~~~~~~~ilL~GppGtGKTtLA~ 54 (413)
T PRK13342 16 GQEHLLGPGKPLRRMIEAGRLSSMILWGPPGTGKTTLAR 54 (413)
T ss_pred CcHHHhCcchHHHHHHHcCCCceEEEECCCCCCHHHHHH
Confidence 455555542333333344555567779999999998773
No 147
>PRK04195 replication factor C large subunit; Provisional
Probab=48.77 E-value=12 Score=45.25 Aligned_cols=37 Identities=27% Similarity=0.428 Sum_probs=27.0
Q ss_pred hHhHHhhhHHHHHHHhcCC-ceeEEeecccCCCCceee
Q 001820 450 QAEVFSDMQPLIRSVLDGY-NVCIFAYGQTGSGKTYTM 486 (1009)
Q Consensus 450 QeeVF~~v~pLV~svLdG~-N~~IfAYGqTGSGKTyTM 486 (1009)
|+++-+.+..++.....|. .-.++-||++|+|||++.
T Consensus 19 ~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla 56 (482)
T PRK04195 19 NEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLA 56 (482)
T ss_pred CHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHH
Confidence 4444455666666666665 556888999999999887
No 148
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=48.42 E-value=10 Score=39.29 Aligned_cols=26 Identities=38% Similarity=0.570 Sum_probs=19.2
Q ss_pred HHHHHHhcCCceeEEeecccCCCCceee
Q 001820 459 PLIRSVLDGYNVCIFAYGQTGSGKTYTM 486 (1009)
Q Consensus 459 pLV~svLdG~N~~IfAYGqTGSGKTyTM 486 (1009)
..++.++.|.| ++..++||+|||.+.
T Consensus 28 ~~~~~~~~~~~--~li~~~TG~GKT~~~ 53 (203)
T cd00268 28 RAIPPLLSGRD--VIGQAQTGSGKTAAF 53 (203)
T ss_pred HHHHHHhcCCc--EEEECCCCCcHHHHH
Confidence 34555666887 567789999999773
No 149
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=48.28 E-value=11 Score=47.35 Aligned_cols=33 Identities=24% Similarity=0.242 Sum_probs=23.2
Q ss_pred hhhHHHHHHHhc-----CCceeEEeecccCCCCceeecC
Q 001820 455 SDMQPLIRSVLD-----GYNVCIFAYGQTGSGKTYTMTG 488 (1009)
Q Consensus 455 ~~v~pLV~svLd-----G~N~~IfAYGqTGSGKTyTM~G 488 (1009)
..|..+++++.. |.+..|+.. +||||||+||..
T Consensus 245 ~av~~~~~~~~~~~~~~~~~~gli~~-~TGsGKT~t~~~ 282 (667)
T TIGR00348 245 RAVKKIVESITRKTWGKDERGGLIWH-TQGSGKTLTMLF 282 (667)
T ss_pred HHHHHHHHHHHhcccCCCCceeEEEE-ecCCCccHHHHH
Confidence 346677777765 445555444 899999999964
No 150
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=48.16 E-value=9.8 Score=46.53 Aligned_cols=32 Identities=22% Similarity=0.485 Sum_probs=25.1
Q ss_pred hhhHHHHHHHhcCCc--eeEEeecccCCCCceee
Q 001820 455 SDMQPLIRSVLDGYN--VCIFAYGQTGSGKTYTM 486 (1009)
Q Consensus 455 ~~v~pLV~svLdG~N--~~IfAYGqTGSGKTyTM 486 (1009)
++|+..++..+.|.. -.++.+|++|+|||.|+
T Consensus 29 ~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv 62 (519)
T PF03215_consen 29 EEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTV 62 (519)
T ss_pred HHHHHHHHHHhccCCCcceEEEECCCCCCHHHHH
Confidence 346777887776653 46788999999999998
No 151
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=47.37 E-value=5.5 Score=37.90 Aligned_cols=15 Identities=40% Similarity=0.740 Sum_probs=13.5
Q ss_pred EEeecccCCCCceee
Q 001820 472 IFAYGQTGSGKTYTM 486 (1009)
Q Consensus 472 IfAYGqTGSGKTyTM 486 (1009)
|+-||++|.|||+.+
T Consensus 1 I~i~G~~G~GKS~l~ 15 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLA 15 (107)
T ss_pred CEEECCCCCCHHHHH
Confidence 578999999999887
No 152
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=47.34 E-value=1.8e+02 Score=30.91 Aligned_cols=18 Identities=11% Similarity=0.530 Sum_probs=12.7
Q ss_pred hhhHHHHHHhhhhhhhhc
Q 001820 373 GYHRVLEENRKLYNQVQD 390 (1009)
Q Consensus 373 ~~~~~~~e~r~l~n~~qe 390 (1009)
.|++.-.+|+++|+.+.+
T Consensus 163 ~~~~~wrk~krmf~ei~d 180 (201)
T KOG4603|consen 163 KYCKEWRKRKRMFREIID 180 (201)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 455566677888888865
No 153
>PF01580 FtsK_SpoIIIE: FtsK/SpoIIIE family; InterPro: IPR002543 The FtsK/SpoIIIE domain is found extensively in a wide variety of proteins from prokaryotes and plasmids [] some of which contain up to three copies.The domain contains a putative ATP binding P-loop motif. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification []. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer []. ; GO: 0000166 nucleotide binding, 0003677 DNA binding, 0005524 ATP binding, 0007049 cell cycle, 0007059 chromosome segregation, 0051301 cell division, 0016021 integral to membrane; PDB: 2IUS_E 2IUU_A 2IUT_A.
Probab=47.25 E-value=5.7 Score=41.79 Aligned_cols=17 Identities=35% Similarity=0.567 Sum_probs=13.2
Q ss_pred eEEeecccCCCCceeec
Q 001820 471 CIFAYGQTGSGKTYTMT 487 (1009)
Q Consensus 471 ~IfAYGqTGSGKTyTM~ 487 (1009)
-++.+|+||||||.+|.
T Consensus 40 h~li~G~tgsGKS~~l~ 56 (205)
T PF01580_consen 40 HLLIAGATGSGKSTLLR 56 (205)
T ss_dssp SEEEE--TTSSHHHHHH
T ss_pred eEEEEcCCCCCccHHHH
Confidence 57899999999999983
No 154
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=47.02 E-value=9.8 Score=43.31 Aligned_cols=40 Identities=23% Similarity=0.282 Sum_probs=26.3
Q ss_pred CChHhHHhhhHHHHHHHhc--CCceeEEeecccCCCCceeec
Q 001820 448 ATQAEVFSDMQPLIRSVLD--GYNVCIFAYGQTGSGKTYTMT 487 (1009)
Q Consensus 448 atQeeVF~~v~pLV~svLd--G~N~~IfAYGqTGSGKTyTM~ 487 (1009)
..|+++-..+..++..... +....++-||++|+|||+...
T Consensus 28 vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~ 69 (328)
T PRK00080 28 IGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLAN 69 (328)
T ss_pred cCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHH
Confidence 4456666666555655432 222357789999999999873
No 155
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=46.91 E-value=7 Score=42.88 Aligned_cols=21 Identities=29% Similarity=0.297 Sum_probs=16.1
Q ss_pred CceeEEeecccCCCCceeecC
Q 001820 468 YNVCIFAYGQTGSGKTYTMTG 488 (1009)
Q Consensus 468 ~N~~IfAYGqTGSGKTyTM~G 488 (1009)
.+..++..|..|||||+||..
T Consensus 12 ~~~~~lV~a~AGSGKT~~l~~ 32 (315)
T PF00580_consen 12 TEGPLLVNAGAGSGKTTTLLE 32 (315)
T ss_dssp -SSEEEEEE-TTSSHHHHHHH
T ss_pred CCCCEEEEeCCCCCchHHHHH
Confidence 667778888999999999954
No 156
>PF00063 Myosin_head: Myosin head (motor domain); InterPro: IPR001609 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. The globular head is well conserved, some highly-conserved regions possibly relating to functional and structural domains []. The rod-like tail starts with an invariant proline residue, and contains many repeats of a 28 residue region, interrupted at 4 regularly-spaced points known as skip residues. Although the sequence of the tail is not well conserved, the chemical character is, hydrophobic, charged and skip residues occuring in a highly ordered and repeated fashion [].; GO: 0003774 motor activity, 0005524 ATP binding, 0016459 myosin complex; PDB: 1LKX_A 2V26_A 2BKI_A 3L9I_A 2BKH_A 2X51_A 2VB6_A 2VAS_A 1OE9_A 1W8J_A ....
Probab=45.74 E-value=11 Score=47.46 Aligned_cols=35 Identities=37% Similarity=0.474 Sum_probs=27.0
Q ss_pred hHHhhhHHHHHHHh-cCCceeEEeecccCCCCceee
Q 001820 452 EVFSDMQPLIRSVL-DGYNVCIFAYGQTGSGKTYTM 486 (1009)
Q Consensus 452 eVF~~v~pLV~svL-dG~N~~IfAYGqTGSGKTyTM 486 (1009)
-||.........++ .+.|-||+-.|.+|||||+|+
T Consensus 67 Hif~~a~~A~~~m~~~~~~Q~IiisGeSGsGKTe~~ 102 (689)
T PF00063_consen 67 HIFAVAQRAYRQMLRTRQNQSIIISGESGSGKTETS 102 (689)
T ss_dssp SHHHHHHHHHHHHHHHTSEEEEEEEESTTSSHHHHH
T ss_pred ccchhhhcccccccccccccceeeccccccccccch
Confidence 36766544444443 689999999999999999986
No 157
>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase. Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.
Probab=45.32 E-value=20 Score=41.51 Aligned_cols=30 Identities=30% Similarity=0.548 Sum_probs=22.7
Q ss_pred hHHHHHHHhcCCceeEEeecccCCCCceeec
Q 001820 457 MQPLIRSVLDGYNVCIFAYGQTGSGKTYTMT 487 (1009)
Q Consensus 457 v~pLV~svLdG~N~~IfAYGqTGSGKTyTM~ 487 (1009)
+..++..++.+. ..|+-.|.||||||.+|.
T Consensus 167 ~~~~L~~~v~~~-~~ili~G~tGsGKTTll~ 196 (340)
T TIGR03819 167 VARLLRAIVAAR-LAFLISGGTGSGKTTLLS 196 (340)
T ss_pred HHHHHHHHHhCC-CeEEEECCCCCCHHHHHH
Confidence 456666666654 678888999999998773
No 158
>PRK10884 SH3 domain-containing protein; Provisional
Probab=45.23 E-value=73 Score=34.55 Aligned_cols=15 Identities=13% Similarity=0.364 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHHH
Q 001820 327 QQHEDIQELKHTLHT 341 (1009)
Q Consensus 327 ~~~~~~~~l~~~l~~ 341 (1009)
.++.++++|+..+..
T Consensus 97 ~le~el~~l~~~l~~ 111 (206)
T PRK10884 97 DLENQVKTLTDKLNN 111 (206)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333344333333
No 159
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=44.89 E-value=11 Score=44.32 Aligned_cols=26 Identities=35% Similarity=0.571 Sum_probs=21.0
Q ss_pred HHHHHHhcCCceeEEeecccCCCCceee
Q 001820 459 PLIRSVLDGYNVCIFAYGQTGSGKTYTM 486 (1009)
Q Consensus 459 pLV~svLdG~N~~IfAYGqTGSGKTyTM 486 (1009)
..|..+++|.| +++.++||||||.+.
T Consensus 30 ~ai~~~~~g~d--~l~~apTGsGKT~~~ 55 (434)
T PRK11192 30 EAIPPALDGRD--VLGSAPTGTGKTAAF 55 (434)
T ss_pred HHHHHHhCCCC--EEEECCCCChHHHHH
Confidence 45667788987 788899999999863
No 160
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=44.65 E-value=17 Score=40.06 Aligned_cols=18 Identities=28% Similarity=0.457 Sum_probs=15.1
Q ss_pred eeEEeecccCCCCceeec
Q 001820 470 VCIFAYGQTGSGKTYTMT 487 (1009)
Q Consensus 470 ~~IfAYGqTGSGKTyTM~ 487 (1009)
.-++-||++|+|||++..
T Consensus 43 ~~vll~GppGtGKTtlA~ 60 (261)
T TIGR02881 43 LHMIFKGNPGTGKTTVAR 60 (261)
T ss_pred ceEEEEcCCCCCHHHHHH
Confidence 457789999999999873
No 161
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=44.63 E-value=23 Score=45.47 Aligned_cols=16 Identities=31% Similarity=0.341 Sum_probs=13.7
Q ss_pred eEEeecccCCCCceee
Q 001820 471 CIFAYGQTGSGKTYTM 486 (1009)
Q Consensus 471 ~IfAYGqTGSGKTyTM 486 (1009)
.++-||++|+|||+..
T Consensus 349 ~lll~GppG~GKT~lA 364 (775)
T TIGR00763 349 ILCLVGPPGVGKTSLG 364 (775)
T ss_pred eEEEECCCCCCHHHHH
Confidence 5777999999999766
No 162
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=44.38 E-value=8.3 Score=37.58 Aligned_cols=15 Identities=40% Similarity=0.578 Sum_probs=13.4
Q ss_pred EEeecccCCCCceee
Q 001820 472 IFAYGQTGSGKTYTM 486 (1009)
Q Consensus 472 IfAYGqTGSGKTyTM 486 (1009)
|+..|.+|||||+..
T Consensus 2 ii~~G~pgsGKSt~a 16 (143)
T PF13671_consen 2 IILCGPPGSGKSTLA 16 (143)
T ss_dssp EEEEESTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 788999999999875
No 163
>PRK06547 hypothetical protein; Provisional
Probab=44.07 E-value=16 Score=38.14 Aligned_cols=29 Identities=24% Similarity=0.351 Sum_probs=20.2
Q ss_pred HHHHHHHhcCCceeEEeecccCCCCceee
Q 001820 458 QPLIRSVLDGYNVCIFAYGQTGSGKTYTM 486 (1009)
Q Consensus 458 ~pLV~svLdG~N~~IfAYGqTGSGKTyTM 486 (1009)
+.++..+..+.-.-|.-+|.+|||||+.-
T Consensus 4 ~~~~~~~~~~~~~~i~i~G~~GsGKTt~a 32 (172)
T PRK06547 4 ALIAARLCGGGMITVLIDGRSGSGKTTLA 32 (172)
T ss_pred HHHHHHhhcCCCEEEEEECCCCCCHHHHH
Confidence 33455555555556777799999999865
No 164
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=43.69 E-value=5.4e+02 Score=32.11 Aligned_cols=45 Identities=13% Similarity=0.094 Sum_probs=26.8
Q ss_pred HhHHHHHHHHHHhhhhhhcC-----CCCCCCChHHHHHHcccchHHHHHHHhhcCC
Q 001820 41 SRRYEAAGWLRKMVGVVAAR-----DLPAEPSEEEFRLGLRSGIILCNVINKVQPG 91 (1009)
Q Consensus 41 ~r~~ea~~WL~~~lg~~~~~-----~lp~~~~ee~f~~~LrDGvvLCkL~N~l~PG 91 (1009)
.++.++.+-|...|-....+ ++-..|+.-||...+ --|.+.|.|+
T Consensus 70 ~~~s~c~~~I~~fL~engf~~~iS~k~l~~PS~KdF~~iF------kfLY~~Ldp~ 119 (581)
T KOG0995|consen 70 RYRSQCIRQIYNFLVENGFSHPISIKLLMKPSVKDFIAIF------KFLYGFLDPD 119 (581)
T ss_pred HHHHHHHHHHHHHHHHcCCCCChhhhhcCCCccccHHHHH------HHHHhccCCC
Confidence 45677888888876553322 112346666777643 3577777775
No 165
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=43.46 E-value=8.8 Score=36.31 Aligned_cols=15 Identities=47% Similarity=0.419 Sum_probs=13.2
Q ss_pred EEeecccCCCCceee
Q 001820 472 IFAYGQTGSGKTYTM 486 (1009)
Q Consensus 472 IfAYGqTGSGKTyTM 486 (1009)
|+-.|.+|||||+..
T Consensus 1 I~i~G~~GsGKtTia 15 (129)
T PF13238_consen 1 IGISGIPGSGKTTIA 15 (129)
T ss_dssp EEEEESTTSSHHHHH
T ss_pred CEEECCCCCCHHHHH
Confidence 677899999999876
No 166
>PLN03025 replication factor C subunit; Provisional
Probab=43.40 E-value=13 Score=42.30 Aligned_cols=43 Identities=23% Similarity=0.424 Sum_probs=25.6
Q ss_pred EeceeeCCCCChHhHHhhhHHHHHHHhcCCceeEEeecccCCCCceeecC
Q 001820 439 SFNKVYGPSATQAEVFSDMQPLIRSVLDGYNVCIFAYGQTGSGKTYTMTG 488 (1009)
Q Consensus 439 ~FD~VF~~~atQeeVF~~v~pLV~svLdG~N~~IfAYGqTGSGKTyTM~G 488 (1009)
+||.|. .|+++...++.++. .|.-..++-||+.|+|||++...
T Consensus 11 ~l~~~~----g~~~~~~~L~~~~~---~~~~~~lll~Gp~G~GKTtla~~ 53 (319)
T PLN03025 11 KLDDIV----GNEDAVSRLQVIAR---DGNMPNLILSGPPGTGKTTSILA 53 (319)
T ss_pred CHHHhc----CcHHHHHHHHHHHh---cCCCceEEEECCCCCCHHHHHHH
Confidence 345554 34455554444433 23333456699999999999854
No 167
>PRK09183 transposase/IS protein; Provisional
Probab=43.19 E-value=13 Score=41.16 Aligned_cols=21 Identities=33% Similarity=0.408 Sum_probs=16.5
Q ss_pred cCCceeEEeecccCCCCceeecC
Q 001820 466 DGYNVCIFAYGQTGSGKTYTMTG 488 (1009)
Q Consensus 466 dG~N~~IfAYGqTGSGKTyTM~G 488 (1009)
.|.| |+-+|++|+||||.+.+
T Consensus 101 ~~~~--v~l~Gp~GtGKThLa~a 121 (259)
T PRK09183 101 RNEN--IVLLGPSGVGKTHLAIA 121 (259)
T ss_pred cCCe--EEEEeCCCCCHHHHHHH
Confidence 4655 45699999999999854
No 168
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=43.12 E-value=7.3 Score=38.12 Aligned_cols=15 Identities=33% Similarity=0.574 Sum_probs=13.5
Q ss_pred EEeecccCCCCceee
Q 001820 472 IFAYGQTGSGKTYTM 486 (1009)
Q Consensus 472 IfAYGqTGSGKTyTM 486 (1009)
|+-+|++|+|||+.+
T Consensus 2 vlL~G~~G~GKt~l~ 16 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLA 16 (139)
T ss_dssp EEEEESSSSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 678999999999877
No 169
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=42.86 E-value=24 Score=44.34 Aligned_cols=38 Identities=32% Similarity=0.682 Sum_probs=29.2
Q ss_pred HhHHhhhHHHHHHHh--cCCceeEEeecccCCCCceeecC
Q 001820 451 AEVFSDMQPLIRSVL--DGYNVCIFAYGQTGSGKTYTMTG 488 (1009)
Q Consensus 451 eeVF~~v~pLV~svL--dG~N~~IfAYGqTGSGKTyTM~G 488 (1009)
+.-|.+|...++.++ +|--+|+..-|..|||||+|+.+
T Consensus 402 e~E~~~I~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~ 441 (767)
T KOG1514|consen 402 ENEFSEIEDFLRSFISDQGLGSCMYISGVPGTGKTATVLE 441 (767)
T ss_pred hHHHHHHHHHHHhhcCCCCCceeEEEecCCCCCceehHHH
Confidence 445666666666666 47777999999999999999854
No 170
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=42.25 E-value=16 Score=46.38 Aligned_cols=19 Identities=42% Similarity=0.592 Sum_probs=15.9
Q ss_pred CceeEEeecccCCCCceee
Q 001820 468 YNVCIFAYGQTGSGKTYTM 486 (1009)
Q Consensus 468 ~N~~IfAYGqTGSGKTyTM 486 (1009)
-|-.++.+|+||||||+-+
T Consensus 270 ~n~vvIIcGeTGsGKTTQv 288 (1172)
T KOG0926|consen 270 ENPVVIICGETGSGKTTQV 288 (1172)
T ss_pred cCCeEEEecCCCCCccccc
Confidence 3556778899999999987
No 171
>PRK13764 ATPase; Provisional
Probab=42.23 E-value=11 Score=46.84 Aligned_cols=19 Identities=26% Similarity=0.344 Sum_probs=16.1
Q ss_pred ceeEEeecccCCCCceeec
Q 001820 469 NVCIFAYGQTGSGKTYTMT 487 (1009)
Q Consensus 469 N~~IfAYGqTGSGKTyTM~ 487 (1009)
...|+..|+||||||+++.
T Consensus 257 ~~~ILIsG~TGSGKTTll~ 275 (602)
T PRK13764 257 AEGILIAGAPGAGKSTFAQ 275 (602)
T ss_pred CCEEEEECCCCCCHHHHHH
Confidence 3448999999999999984
No 172
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=42.22 E-value=14 Score=44.07 Aligned_cols=26 Identities=42% Similarity=0.631 Sum_probs=20.9
Q ss_pred HHHHHHhcCCceeEEeecccCCCCceee
Q 001820 459 PLIRSVLDGYNVCIFAYGQTGSGKTYTM 486 (1009)
Q Consensus 459 pLV~svLdG~N~~IfAYGqTGSGKTyTM 486 (1009)
..|..+++|.| |++-.+||||||.+.
T Consensus 30 ~ai~~il~g~d--vlv~apTGsGKTla~ 55 (456)
T PRK10590 30 QAIPAVLEGRD--LMASAQTGTGKTAGF 55 (456)
T ss_pred HHHHHHhCCCC--EEEECCCCCcHHHHH
Confidence 45677889988 577789999999874
No 173
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=42.15 E-value=13 Score=43.78 Aligned_cols=26 Identities=35% Similarity=0.450 Sum_probs=20.0
Q ss_pred HHHHHHhcCCceeEEeecccCCCCceee
Q 001820 459 PLIRSVLDGYNVCIFAYGQTGSGKTYTM 486 (1009)
Q Consensus 459 pLV~svLdG~N~~IfAYGqTGSGKTyTM 486 (1009)
..|..++.|.|+ ++-++||||||.+.
T Consensus 37 ~aip~il~g~dv--i~~ApTGsGKTla~ 62 (423)
T PRK04837 37 LALPLTLAGRDV--AGQAQTGTGKTMAF 62 (423)
T ss_pred HHHHHHhCCCcE--EEECCCCchHHHHH
Confidence 456678899885 45669999999764
No 174
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=41.38 E-value=18 Score=46.53 Aligned_cols=26 Identities=46% Similarity=0.492 Sum_probs=21.8
Q ss_pred HHHHHHhcCCceeEEeecccCCCCceee
Q 001820 459 PLIRSVLDGYNVCIFAYGQTGSGKTYTM 486 (1009)
Q Consensus 459 pLV~svLdG~N~~IfAYGqTGSGKTyTM 486 (1009)
..+..+.+|+|+.|.| +||||||-+-
T Consensus 29 ~a~~~i~~G~nvLiiA--PTGsGKTeAA 54 (814)
T COG1201 29 YAIPEIHSGENVLIIA--PTGSGKTEAA 54 (814)
T ss_pred HHHHHHhCCCceEEEc--CCCCChHHHH
Confidence 4566778999999988 9999999764
No 175
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=41.34 E-value=97 Score=38.11 Aligned_cols=16 Identities=38% Similarity=0.706 Sum_probs=13.8
Q ss_pred eEEeecccCCCCceee
Q 001820 471 CIFAYGQTGSGKTYTM 486 (1009)
Q Consensus 471 ~IfAYGqTGSGKTyTM 486 (1009)
.|+-||++|+|||++.
T Consensus 218 GILLyGPPGTGKT~LA 233 (512)
T TIGR03689 218 GVLLYGPPGCGKTLIA 233 (512)
T ss_pred ceEEECCCCCcHHHHH
Confidence 4888999999998765
No 176
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=41.31 E-value=12 Score=41.55 Aligned_cols=34 Identities=21% Similarity=0.393 Sum_probs=21.7
Q ss_pred hHhHHhhhHHHHHHHhcCCceeEEeecccCCCCceee
Q 001820 450 QAEVFSDMQPLIRSVLDGYNVCIFAYGQTGSGKTYTM 486 (1009)
Q Consensus 450 QeeVF~~v~pLV~svLdG~N~~IfAYGqTGSGKTyTM 486 (1009)
|+++-+.+...+. .|...-++-||+.|+|||+++
T Consensus 22 ~~~~~~~l~~~i~---~~~~~~~ll~G~~G~GKt~~~ 55 (319)
T PRK00440 22 QEEIVERLKSYVK---EKNMPHLLFAGPPGTGKTTAA 55 (319)
T ss_pred cHHHHHHHHHHHh---CCCCCeEEEECCCCCCHHHHH
Confidence 3444444443332 344445788999999999877
No 177
>PHA00276 phage lambda Rz-like lysis protein
Probab=40.96 E-value=68 Score=32.92 Aligned_cols=44 Identities=18% Similarity=0.303 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHhhHHHHHhhhhHHHHHHhhhhhhhhccCCCeEEEEEeCCCC
Q 001820 343 KAGIQFMQMKFHEEFSNLGIHIHGLAHAASGYHRVLEENRKLYNQVQDLKGSIRVYCRVRPFL 405 (1009)
Q Consensus 343 k~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~e~r~l~n~~qelkGnIrV~~RVRP~~ 405 (1009)
.+.+..|..+|++++.........|.. .| -.|++|+-+|++|..
T Consensus 51 QqaVaal~~~yqkEladaK~~~DrLia-------------dl------RsGn~RLqvr~~a~s 94 (144)
T PHA00276 51 QAAINAVSKEYQEDLAALEGSTDRVIA-------------DL------RSDNKRLRVRLKPTS 94 (144)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHH-------------HH------HcCCceEEeeeeccc
Confidence 445566666777766655444333221 11 149999999999974
No 178
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=40.92 E-value=10 Score=39.89 Aligned_cols=20 Identities=35% Similarity=0.373 Sum_probs=15.2
Q ss_pred CCceeEEeecccCCCCceee
Q 001820 467 GYNVCIFAYGQTGSGKTYTM 486 (1009)
Q Consensus 467 G~N~~IfAYGqTGSGKTyTM 486 (1009)
.....||..||.|||||+++
T Consensus 13 ~~P~~~i~aG~~GsGKSt~~ 32 (199)
T PF06414_consen 13 EKPTLIIIAGQPGSGKSTLA 32 (199)
T ss_dssp SS-EEEEEES-TTSTTHHHH
T ss_pred cCCEEEEEeCCCCCCHHHHH
Confidence 44567899999999998877
No 179
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=40.55 E-value=10 Score=39.50 Aligned_cols=17 Identities=29% Similarity=0.352 Sum_probs=14.7
Q ss_pred eeEEeecccCCCCceee
Q 001820 470 VCIFAYGQTGSGKTYTM 486 (1009)
Q Consensus 470 ~~IfAYGqTGSGKTyTM 486 (1009)
+.++-+|+||+|||++.
T Consensus 4 ~~~ll~GpsGvGKT~la 20 (171)
T PF07724_consen 4 SNFLLAGPSGVGKTELA 20 (171)
T ss_dssp EEEEEESSTTSSHHHHH
T ss_pred EEEEEECCCCCCHHHHH
Confidence 46788999999999976
No 180
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=40.25 E-value=16 Score=40.98 Aligned_cols=29 Identities=28% Similarity=0.345 Sum_probs=21.3
Q ss_pred HHHHHHHhcCCceeEEeecccCCCCceee
Q 001820 458 QPLIRSVLDGYNVCIFAYGQTGSGKTYTM 486 (1009)
Q Consensus 458 ~pLV~svLdG~N~~IfAYGqTGSGKTyTM 486 (1009)
..+|...=..-+.+|.-||+-|||||+.|
T Consensus 9 a~~I~~~~~~~~~~IgL~G~WGsGKSs~l 37 (325)
T PF07693_consen 9 AEIIKNPDSDDPFVIGLYGEWGSGKSSFL 37 (325)
T ss_pred HHHHhccCCCCCeEEEEECCCCCCHHHHH
Confidence 33443332256789999999999999987
No 181
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=39.50 E-value=20 Score=42.69 Aligned_cols=18 Identities=44% Similarity=0.530 Sum_probs=15.8
Q ss_pred eeEEeecccCCCCceeec
Q 001820 470 VCIFAYGQTGSGKTYTMT 487 (1009)
Q Consensus 470 ~~IfAYGqTGSGKTyTM~ 487 (1009)
..|+-.|++|+|||+|+.
T Consensus 242 ~vI~LVGptGvGKTTTia 259 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLA 259 (436)
T ss_pred cEEEEECCCCCcHHHHHH
Confidence 578889999999999983
No 182
>PHA00729 NTP-binding motif containing protein
Probab=39.47 E-value=20 Score=39.32 Aligned_cols=30 Identities=23% Similarity=0.302 Sum_probs=21.2
Q ss_pred HHHHHHhcCCceeEEeecccCCCCceeecC
Q 001820 459 PLIRSVLDGYNVCIFAYGQTGSGKTYTMTG 488 (1009)
Q Consensus 459 pLV~svLdG~N~~IfAYGqTGSGKTyTM~G 488 (1009)
-++..+..|--..|+.+|.+|+||||....
T Consensus 7 ~~~~~l~~~~f~nIlItG~pGvGKT~LA~a 36 (226)
T PHA00729 7 KIVSAYNNNGFVSAVIFGKQGSGKTTYALK 36 (226)
T ss_pred HHHHHHhcCCeEEEEEECCCCCCHHHHHHH
Confidence 345555443335799999999999987743
No 183
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=39.24 E-value=18 Score=43.59 Aligned_cols=35 Identities=6% Similarity=0.189 Sum_probs=22.8
Q ss_pred cCCCceeeEEEecCCCCCcHHHHHHHHHHHH--HhhccccC
Q 001820 684 LGGQAKTLMFVHISPEPDAVGETISTLKFAE--RVATVELG 722 (1009)
Q Consensus 684 LGGnskT~mI~~ISP~~~~~~ETlsTLrFA~--Rak~I~~~ 722 (1009)
+.-..+..+|++.+....+ +..|.+|- |..-|++.
T Consensus 320 f~iP~Nl~IIgTMNt~Drs----~~~lD~AlrRRF~fi~i~ 356 (459)
T PRK11331 320 FYVPENVYIIGLMNTADRS----LAVVDYALRRRFSFIDIE 356 (459)
T ss_pred ccCCCCeEEEEecCccccc----hhhccHHHHhhhheEEec
Confidence 4557889999999988754 34566553 44444443
No 184
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=39.14 E-value=11 Score=42.21 Aligned_cols=17 Identities=35% Similarity=0.638 Sum_probs=14.2
Q ss_pred eeEEeecccCCCCceee
Q 001820 470 VCIFAYGQTGSGKTYTM 486 (1009)
Q Consensus 470 ~~IfAYGqTGSGKTyTM 486 (1009)
-.|+-||++|+|||++-
T Consensus 152 knVLFyGppGTGKTm~A 168 (368)
T COG1223 152 KNVLFYGPPGTGKTMMA 168 (368)
T ss_pred ceeEEECCCCccHHHHH
Confidence 35788999999998764
No 185
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=39.11 E-value=2.9e+02 Score=30.99 Aligned_cols=23 Identities=26% Similarity=0.403 Sum_probs=17.4
Q ss_pred HHHHHHHHhhhhhhhcccccccc
Q 001820 256 EEFEHRIASQYEQMKTAPYHVNK 278 (1009)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~ 278 (1009)
.|+|.-|.+|-.+++++++++..
T Consensus 44 rE~EaelesqL~q~etrnrdl~t 66 (333)
T KOG1853|consen 44 REIEAELESQLDQLETRNRDLET 66 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 56778888888888888877544
No 186
>PRK10536 hypothetical protein; Provisional
Probab=39.10 E-value=14 Score=41.41 Aligned_cols=42 Identities=26% Similarity=0.399 Sum_probs=27.6
Q ss_pred eEEeceeeCCCCChHhHHhhhHHHHHHHhcCCceeEEeecccCCCCceeec
Q 001820 437 SFSFNKVYGPSATQAEVFSDMQPLIRSVLDGYNVCIFAYGQTGSGKTYTMT 487 (1009)
Q Consensus 437 ~F~FD~VF~~~atQeeVF~~v~pLV~svLdG~N~~IfAYGqTGSGKTyTM~ 487 (1009)
.|.|-.|-+-+..|..... .+.+ +.-|+..|++||||||...
T Consensus 51 ~~~~~~i~p~n~~Q~~~l~-------al~~--~~lV~i~G~aGTGKT~La~ 92 (262)
T PRK10536 51 SRDTSPILARNEAQAHYLK-------AIES--KQLIFATGEAGCGKTWISA 92 (262)
T ss_pred hcCCccccCCCHHHHHHHH-------HHhc--CCeEEEECCCCCCHHHHHH
Confidence 4555556655556655443 2233 3488999999999999873
No 187
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=38.98 E-value=28 Score=41.79 Aligned_cols=20 Identities=40% Similarity=0.416 Sum_probs=16.7
Q ss_pred CceeEEeecccCCCCceeec
Q 001820 468 YNVCIFAYGQTGSGKTYTMT 487 (1009)
Q Consensus 468 ~N~~IfAYGqTGSGKTyTM~ 487 (1009)
....|+-+|.+|+|||+|..
T Consensus 94 ~p~vI~lvG~~GsGKTTtaa 113 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAA 113 (437)
T ss_pred CCeEEEEECCCCCcHHHHHH
Confidence 34578889999999999983
No 188
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=38.97 E-value=16 Score=46.49 Aligned_cols=38 Identities=24% Similarity=0.338 Sum_probs=23.3
Q ss_pred hHhHHhhhHHHHHHHhcCCceeEEeecccCCCCceeec
Q 001820 450 QAEVFSDMQPLIRSVLDGYNVCIFAYGQTGSGKTYTMT 487 (1009)
Q Consensus 450 QeeVF~~v~pLV~svLdG~N~~IfAYGqTGSGKTyTM~ 487 (1009)
|+.+-.....+...+-.+.-..++-||++|+|||++..
T Consensus 33 Qe~ii~~~~~L~~~i~~~~~~slLL~GPpGtGKTTLA~ 70 (725)
T PRK13341 33 QDHILGEGRLLRRAIKADRVGSLILYGPPGVGKTTLAR 70 (725)
T ss_pred cHHHhhhhHHHHHHHhcCCCceEEEECCCCCCHHHHHH
Confidence 44444332233333334544577889999999998874
No 189
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=38.55 E-value=1.5e+02 Score=25.90 Aligned_cols=41 Identities=7% Similarity=0.209 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 001820 313 ELKSQSLKQKMIFDQQHEDIQELKHTLHTTKAGIQFMQMKF 353 (1009)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~k~~~~~~~~~~ 353 (1009)
|+...+.+....+..+++++++++..++.++..++.+-.-|
T Consensus 4 elEn~~~~~~~~i~tvk~en~~i~~~ve~i~envk~ll~lY 44 (55)
T PF05377_consen 4 ELENELPRIESSINTVKKENEEISESVEKIEENVKDLLSLY 44 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455556666777777888888877777776666554433
No 190
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=38.54 E-value=16 Score=41.27 Aligned_cols=28 Identities=39% Similarity=0.630 Sum_probs=24.0
Q ss_pred HHHH-HHhcCCceeEEeecccCCCCceee
Q 001820 459 PLIR-SVLDGYNVCIFAYGQTGSGKTYTM 486 (1009)
Q Consensus 459 pLV~-svLdG~N~~IfAYGqTGSGKTyTM 486 (1009)
.||. ++-+||.--|++.|.||.|||..|
T Consensus 31 QLV~ksv~~GF~FNilCvGETg~GKsTLm 59 (406)
T KOG3859|consen 31 QLVNKSVSQGFCFNILCVGETGLGKSTLM 59 (406)
T ss_pred HHHHHHHhcCceEEEEEeccCCccHHHHH
Confidence 4554 567899999999999999999877
No 191
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=38.38 E-value=4.6e+02 Score=31.93 Aligned_cols=31 Identities=19% Similarity=0.263 Sum_probs=16.4
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHhhhhHH
Q 001820 333 QELKHTLHTTKAGIQFMQMKFHEEFSNLGIH 363 (1009)
Q Consensus 333 ~~l~~~l~~~k~~~~~~~~~~~~~~~~l~~~ 363 (1009)
..|..++..+|+....||..|..++..-.+-
T Consensus 414 etLqlelkK~k~nyv~LQEry~~eiQqKnks 444 (527)
T PF15066_consen 414 ETLQLELKKIKANYVHLQERYMTEIQQKNKS 444 (527)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHhhhH
Confidence 3444445555555566666666655444333
No 192
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=38.08 E-value=15 Score=49.08 Aligned_cols=29 Identities=28% Similarity=0.453 Sum_probs=20.1
Q ss_pred HHHHHHhcCCceeEEeecccCCCCceeecC
Q 001820 459 PLIRSVLDGYNVCIFAYGQTGSGKTYTMTG 488 (1009)
Q Consensus 459 pLV~svLdG~N~~IfAYGqTGSGKTyTM~G 488 (1009)
.+++.+.+|...+++. .+||||||+||.+
T Consensus 424 ai~~a~~~g~r~~Ll~-maTGSGKT~tai~ 452 (1123)
T PRK11448 424 AVEKAIVEGQREILLA-MATGTGKTRTAIA 452 (1123)
T ss_pred HHHHHHHhccCCeEEE-eCCCCCHHHHHHH
Confidence 3444555676654444 8999999999865
No 193
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=37.74 E-value=12 Score=43.94 Aligned_cols=19 Identities=37% Similarity=0.384 Sum_probs=15.8
Q ss_pred ceeEEeecccCCCCceeec
Q 001820 469 NVCIFAYGQTGSGKTYTMT 487 (1009)
Q Consensus 469 N~~IfAYGqTGSGKTyTM~ 487 (1009)
...|.-+|+||+|||+|+.
T Consensus 137 g~ii~lvGptGvGKTTtia 155 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTA 155 (374)
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 3466789999999999984
No 194
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=37.67 E-value=1.4e+02 Score=31.74 Aligned_cols=19 Identities=26% Similarity=0.326 Sum_probs=10.8
Q ss_pred hhhHHHHHHhhhhhhhhcc
Q 001820 373 GYHRVLEENRKLYNQVQDL 391 (1009)
Q Consensus 373 ~~~~~~~e~r~l~n~~qel 391 (1009)
...+...||+.|-..+.+.
T Consensus 166 k~~~l~~En~~Lv~Rwm~~ 184 (194)
T PF08614_consen 166 KLRKLEEENRELVERWMQR 184 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4445556777776655443
No 195
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=37.49 E-value=22 Score=42.41 Aligned_cols=18 Identities=39% Similarity=0.523 Sum_probs=14.9
Q ss_pred eEEeecccCCCCceeecC
Q 001820 471 CIFAYGQTGSGKTYTMTG 488 (1009)
Q Consensus 471 ~IfAYGqTGSGKTyTM~G 488 (1009)
+|+-.|+||+|||+|+..
T Consensus 223 ~i~~vGptGvGKTTt~~k 240 (424)
T PRK05703 223 VVALVGPTGVGKTTTLAK 240 (424)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 566679999999999843
No 196
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=37.25 E-value=1.4e+02 Score=32.78 Aligned_cols=37 Identities=19% Similarity=0.227 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 001820 313 ELKSQSLKQKMIFDQQHEDIQELKHTLHTTKAGIQFM 349 (1009)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~k~~~~~~ 349 (1009)
++++.+...+..++..+++..+|...+..+.+++...
T Consensus 132 d~ke~~ee~kekl~E~~~EkeeL~~eleele~e~ee~ 168 (290)
T COG4026 132 DLKEDYEELKEKLEELQKEKEELLKELEELEAEYEEV 168 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444455555555555555555555444444443
No 197
>cd01383 MYSc_type_VIII Myosin motor domain, plant-specific type VIII myosins, a subgroup which has been associated with endocytosis, cytokinesis, cell-to-cell coupling and gating at plasmodesmata. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates f
Probab=37.16 E-value=26 Score=44.28 Aligned_cols=35 Identities=29% Similarity=0.438 Sum_probs=27.4
Q ss_pred hHHhhhHHHHHHHh-cCCceeEEeecccCCCCceee
Q 001820 452 EVFSDMQPLIRSVL-DGYNVCIFAYGQTGSGKTYTM 486 (1009)
Q Consensus 452 eVF~~v~pLV~svL-dG~N~~IfAYGqTGSGKTyTM 486 (1009)
-||.-.......++ .|.|-||+.-|.+|||||.|.
T Consensus 74 HifaiA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~ 109 (677)
T cd01383 74 HVYAIADTAYNEMMRDEVNQSIIISGESGAGKTETA 109 (677)
T ss_pred CHHHHHHHHHHHHHHcCCCceEEEecCCCCCcchHH
Confidence 46765544455544 589999999999999999986
No 198
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=36.73 E-value=27 Score=40.15 Aligned_cols=18 Identities=39% Similarity=0.567 Sum_probs=15.0
Q ss_pred eeEEeecccCCCCceeec
Q 001820 470 VCIFAYGQTGSGKTYTMT 487 (1009)
Q Consensus 470 ~~IfAYGqTGSGKTyTM~ 487 (1009)
..|.-.|++|+|||+|+.
T Consensus 115 ~vi~lvGpnGsGKTTt~~ 132 (318)
T PRK10416 115 FVILVVGVNGVGKTTTIG 132 (318)
T ss_pred eEEEEECCCCCcHHHHHH
Confidence 466677999999999983
No 199
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=36.58 E-value=21 Score=42.91 Aligned_cols=26 Identities=35% Similarity=0.507 Sum_probs=20.4
Q ss_pred HHHHHHhcCCceeEEeecccCCCCceee
Q 001820 459 PLIRSVLDGYNVCIFAYGQTGSGKTYTM 486 (1009)
Q Consensus 459 pLV~svLdG~N~~IfAYGqTGSGKTyTM 486 (1009)
..|..++.|.++ ++..+||||||.+.
T Consensus 18 ~ai~~~l~g~dv--lv~apTGsGKTl~y 43 (470)
T TIGR00614 18 EVINAVLLGRDC--FVVMPTGGGKSLCY 43 (470)
T ss_pred HHHHHHHcCCCE--EEEcCCCCcHhHHH
Confidence 467778899975 55579999999764
No 200
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=36.55 E-value=29 Score=40.65 Aligned_cols=46 Identities=22% Similarity=0.491 Sum_probs=28.0
Q ss_pred eeEE-ec-eeeCCCCChHhHHhhhHHHHHHHhcC---CceeEEeecccCCCCcee
Q 001820 436 KSFS-FN-KVYGPSATQAEVFSDMQPLIRSVLDG---YNVCIFAYGQTGSGKTYT 485 (1009)
Q Consensus 436 k~F~-FD-~VF~~~atQeeVF~~v~pLV~svLdG---~N~~IfAYGqTGSGKTyT 485 (1009)
+.|. |+ .||+. +++-..+...+.....| .+-.+.-.|++|||||..
T Consensus 44 ~~y~~F~~~~~G~----~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStl 94 (361)
T smart00763 44 KRYRFFDHDFFGM----EEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSL 94 (361)
T ss_pred eeccccchhccCc----HHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHH
Confidence 4444 55 67774 44444433344444444 456688899999999854
No 201
>smart00242 MYSc Myosin. Large ATPases. ATPase; molecular motor. Muscle contraction consists of a cyclical interaction between myosin and actin. The core of the myosin structure is similar in fold to that of kinesin.
Probab=36.47 E-value=25 Score=44.49 Aligned_cols=35 Identities=34% Similarity=0.470 Sum_probs=26.6
Q ss_pred hHHhhhHHHHHHHh-cCCceeEEeecccCCCCceee
Q 001820 452 EVFSDMQPLIRSVL-DGYNVCIFAYGQTGSGKTYTM 486 (1009)
Q Consensus 452 eVF~~v~pLV~svL-dG~N~~IfAYGqTGSGKTyTM 486 (1009)
-||.-.......++ .|.|-||+.-|.+|||||.|.
T Consensus 74 HifavA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~ 109 (677)
T smart00242 74 HVFAIADNAYRNMLNDKENQSIIISGESGAGKTENT 109 (677)
T ss_pred CHHHHHHHHHHHHHhcCCCceEEEecCCCCcchHHH
Confidence 46665444444433 689999999999999999987
No 202
>cd00124 MYSc Myosin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the fila
Probab=36.39 E-value=25 Score=44.41 Aligned_cols=35 Identities=34% Similarity=0.480 Sum_probs=27.5
Q ss_pred hHHhhhHHHHHHHh-cCCceeEEeecccCCCCceee
Q 001820 452 EVFSDMQPLIRSVL-DGYNVCIFAYGQTGSGKTYTM 486 (1009)
Q Consensus 452 eVF~~v~pLV~svL-dG~N~~IfAYGqTGSGKTyTM 486 (1009)
-||.-.......++ .|.|-||+.-|.+|||||.+.
T Consensus 68 HifavA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~ 103 (679)
T cd00124 68 HVFAIADRAYRNMLRDRRNQSIIISGESGAGKTENT 103 (679)
T ss_pred CHHHHHHHHHHHHHhcCCCceEEEecCCCCCchHHH
Confidence 46665555555554 599999999999999999987
No 203
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=36.08 E-value=13 Score=43.72 Aligned_cols=16 Identities=44% Similarity=0.972 Sum_probs=14.4
Q ss_pred eEEeecccCCCCceee
Q 001820 471 CIFAYGQTGSGKTYTM 486 (1009)
Q Consensus 471 ~IfAYGqTGSGKTyTM 486 (1009)
.|+-||.+||||||++
T Consensus 32 ~~~iyG~sgTGKT~~~ 47 (438)
T KOG2543|consen 32 IVHIYGHSGTGKTYLV 47 (438)
T ss_pred eEEEeccCCCchhHHH
Confidence 3689999999999987
No 204
>PRK14974 cell division protein FtsY; Provisional
Probab=36.07 E-value=28 Score=40.30 Aligned_cols=20 Identities=40% Similarity=0.514 Sum_probs=17.0
Q ss_pred CceeEEeecccCCCCceeec
Q 001820 468 YNVCIFAYGQTGSGKTYTMT 487 (1009)
Q Consensus 468 ~N~~IfAYGqTGSGKTyTM~ 487 (1009)
....|.-.|.+|+|||+|+.
T Consensus 139 ~~~vi~~~G~~GvGKTTtia 158 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIA 158 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHH
Confidence 35688899999999999983
No 205
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=36.06 E-value=2.6e+02 Score=33.59 Aligned_cols=43 Identities=26% Similarity=0.288 Sum_probs=21.9
Q ss_pred HHHHHhhhhhhhhcc--CCCeEEEEEeCCCCCCCCCCCcceEeecCCeEEEeCC
Q 001820 377 VLEENRKLYNQVQDL--KGSIRVYCRVRPFLSGQSNYLSTVDHIEEGNITINTP 428 (1009)
Q Consensus 377 ~~~e~r~l~n~~qel--kGnIrV~~RVRP~~~~E~~~~~~v~~~~~~~i~v~~p 428 (1009)
..++...|.+++... .+.|.|.=++.|= +...+.+....+..+
T Consensus 394 l~~~~~~l~~~l~~~~~~~~I~v~~~vypg---------v~i~i~~~~~~i~~~ 438 (451)
T PF03961_consen 394 LKEELKELKEELERSYKEARIKVRKRVYPG---------VEIHIGNKSYKIKEE 438 (451)
T ss_pred HHHHHHHHHHHHHhhccceEEEECCEEECC---------EEEEECCEEEEEeee
Confidence 334444566666665 3445554455551 334455555555544
No 206
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=35.98 E-value=3.1e+02 Score=31.92 Aligned_cols=40 Identities=18% Similarity=0.142 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 001820 318 SLKQKMIFDQQHEDIQELKHTLHTTKAGIQFMQMKFHEEF 357 (1009)
Q Consensus 318 ~~~~~~~~~~~~~~~~~l~~~l~~~k~~~~~~~~~~~~~~ 357 (1009)
+...+....+.+.+.++|.+++.++.+-.+.|...|++-+
T Consensus 150 L~~l~~e~~Ekeeesq~LnrELaE~layqq~L~~eyQatf 189 (401)
T PF06785_consen 150 LDALQQECGEKEEESQTLNRELAEALAYQQELNDEYQATF 189 (401)
T ss_pred HHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 3334444445555555666666555555555555555433
No 207
>cd01384 MYSc_type_XI Myosin motor domain, plant-specific type XI myosin, involved in organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new act
Probab=35.95 E-value=26 Score=44.29 Aligned_cols=34 Identities=32% Similarity=0.554 Sum_probs=25.8
Q ss_pred HHhhhHHHHHHHh-cCCceeEEeecccCCCCceee
Q 001820 453 VFSDMQPLIRSVL-DGYNVCIFAYGQTGSGKTYTM 486 (1009)
Q Consensus 453 VF~~v~pLV~svL-dG~N~~IfAYGqTGSGKTyTM 486 (1009)
||.-.......++ .|.|-||+.-|.+|||||.|.
T Consensus 71 ifaiA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~ 105 (674)
T cd01384 71 VFAIADAAYRAMINEGKSQSILVSGESGAGKTETT 105 (674)
T ss_pred HHHHHHHHHHHHHHcCCCceEEEECCCCCCchhHH
Confidence 6655443344433 589999999999999999987
No 208
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=35.73 E-value=17 Score=40.67 Aligned_cols=28 Identities=25% Similarity=0.402 Sum_probs=20.1
Q ss_pred HHHHHHhcCCceeEEeecccCCCCceeec
Q 001820 459 PLIRSVLDGYNVCIFAYGQTGSGKTYTMT 487 (1009)
Q Consensus 459 pLV~svLdG~N~~IfAYGqTGSGKTyTM~ 487 (1009)
-+++..+.. +--++-.|++|+|||-++.
T Consensus 24 ~ll~~l~~~-~~pvLl~G~~GtGKT~li~ 51 (272)
T PF12775_consen 24 YLLDLLLSN-GRPVLLVGPSGTGKTSLIQ 51 (272)
T ss_dssp HHHHHHHHC-TEEEEEESSTTSSHHHHHH
T ss_pred HHHHHHHHc-CCcEEEECCCCCchhHHHH
Confidence 455555543 5566889999999998873
No 209
>cd01378 MYSc_type_I Myosin motor domain, type I myosins. Myosin I generates movement at the leading edge in cell motility, and class I myosins have been implicated in phagocytosis and vesicle transport. Myosin I, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 picon
Probab=35.59 E-value=27 Score=44.12 Aligned_cols=35 Identities=26% Similarity=0.497 Sum_probs=26.8
Q ss_pred hHHhhhHHHHHHHh-cCCceeEEeecccCCCCceee
Q 001820 452 EVFSDMQPLIRSVL-DGYNVCIFAYGQTGSGKTYTM 486 (1009)
Q Consensus 452 eVF~~v~pLV~svL-dG~N~~IfAYGqTGSGKTyTM 486 (1009)
-||.-.......++ .|.|-||+.-|.+|||||.|.
T Consensus 68 HifaiA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~ 103 (674)
T cd01378 68 HIYALADNAYRSMKSENENQCVIISGESGAGKTEAA 103 (674)
T ss_pred CHHHHHHHHHHHHHHcCCCceEEEEcCCCCCcchHH
Confidence 36665444444444 589999999999999999987
No 210
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=35.42 E-value=18 Score=43.26 Aligned_cols=26 Identities=31% Similarity=0.394 Sum_probs=20.7
Q ss_pred HHHHHHhcCCceeEEeecccCCCCceee
Q 001820 459 PLIRSVLDGYNVCIFAYGQTGSGKTYTM 486 (1009)
Q Consensus 459 pLV~svLdG~N~~IfAYGqTGSGKTyTM 486 (1009)
..+..+++|.|+.+ ..+||||||.+.
T Consensus 116 ~ai~~~~~G~dvi~--~apTGSGKTlay 141 (475)
T PRK01297 116 QVLGYTLAGHDAIG--RAQTGTGKTAAF 141 (475)
T ss_pred HHHHHHhCCCCEEE--ECCCCChHHHHH
Confidence 46778899999765 459999999664
No 211
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=35.40 E-value=44 Score=39.80 Aligned_cols=44 Identities=34% Similarity=0.479 Sum_probs=28.4
Q ss_pred eEEeecccCCCCce--------------eecCCCCCCccccchhhHHHHHHHHHHHHhcc
Q 001820 471 CIFAYGQTGSGKTY--------------TMTGPRELTEKSQGVNYRALSDLFLIAEQRKD 516 (1009)
Q Consensus 471 ~IfAYGqTGSGKTy--------------TM~G~~~~~~~~~GIipRal~dLF~~~~~~~~ 516 (1009)
-|+-||+.|+|||- .|.|.+...-...|+ -.++.||........
T Consensus 386 NilfyGPPGTGKTm~ArelAr~SGlDYA~mTGGDVAPlG~qaV--TkiH~lFDWakkS~r 443 (630)
T KOG0742|consen 386 NILFYGPPGTGKTMFARELARHSGLDYAIMTGGDVAPLGAQAV--TKIHKLFDWAKKSRR 443 (630)
T ss_pred heeeeCCCCCCchHHHHHHHhhcCCceehhcCCCccccchHHH--HHHHHHHHHHhhccc
Confidence 48899999999983 345544322223343 368899998765443
No 212
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=35.30 E-value=28 Score=39.01 Aligned_cols=19 Identities=37% Similarity=0.469 Sum_probs=14.8
Q ss_pred ceeEEeecccCCCCceeec
Q 001820 469 NVCIFAYGQTGSGKTYTMT 487 (1009)
Q Consensus 469 N~~IfAYGqTGSGKTyTM~ 487 (1009)
..+|...|++|+|||.|..
T Consensus 72 ~~vi~l~G~~G~GKTTt~a 90 (272)
T TIGR00064 72 PNVILFVGVNGVGKTTTIA 90 (272)
T ss_pred CeEEEEECCCCCcHHHHHH
Confidence 3455566999999999984
No 213
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=35.04 E-value=19 Score=45.16 Aligned_cols=26 Identities=38% Similarity=0.617 Sum_probs=20.4
Q ss_pred HHHHHHhcCCceeEEeecccCCCCceee
Q 001820 459 PLIRSVLDGYNVCIFAYGQTGSGKTYTM 486 (1009)
Q Consensus 459 pLV~svLdG~N~~IfAYGqTGSGKTyTM 486 (1009)
..|..++.|.+ |++.+|||||||.+.
T Consensus 35 ~ai~~ll~g~d--vl~~ApTGsGKT~af 60 (629)
T PRK11634 35 ECIPHLLNGRD--VLGMAQTGSGKTAAF 60 (629)
T ss_pred HHHHHHHcCCC--EEEEcCCCCcHHHHH
Confidence 35666788887 677789999999874
No 214
>PRK06696 uridine kinase; Validated
Probab=34.81 E-value=34 Score=36.77 Aligned_cols=35 Identities=20% Similarity=0.154 Sum_probs=23.2
Q ss_pred hHHhhhHHHHHHHhcCCceeEEeecccCCCCceee
Q 001820 452 EVFSDMQPLIRSVLDGYNVCIFAYGQTGSGKTYTM 486 (1009)
Q Consensus 452 eVF~~v~pLV~svLdG~N~~IfAYGqTGSGKTyTM 486 (1009)
++.+++...|.+.-.+....|.--|.+|||||+..
T Consensus 5 ~~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA 39 (223)
T PRK06696 5 QLIKELAEHILTLNLTRPLRVAIDGITASGKTTFA 39 (223)
T ss_pred HHHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHH
Confidence 34444444443334566777888899999999865
No 215
>cd01385 MYSc_type_IX Myosin motor domain, type IX myosins. Myosin IX is a processive single-headed motor, which might play a role in signalling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the hea
Probab=34.76 E-value=29 Score=43.98 Aligned_cols=35 Identities=31% Similarity=0.492 Sum_probs=26.1
Q ss_pred hHHhhhHHHHHHHh-cCCceeEEeecccCCCCceee
Q 001820 452 EVFSDMQPLIRSVL-DGYNVCIFAYGQTGSGKTYTM 486 (1009)
Q Consensus 452 eVF~~v~pLV~svL-dG~N~~IfAYGqTGSGKTyTM 486 (1009)
-||.-.......++ .|.|-||+.-|.+|||||.|.
T Consensus 76 Hiy~iA~~Ay~~m~~~~~~QsIiisGESGAGKTet~ 111 (692)
T cd01385 76 HIFAIADVAYYNMLRKKVNQCIVISGESGSGKTEST 111 (692)
T ss_pred CHHHHHHHHHHHHHhcCCCceEEEecCCCCCchHHH
Confidence 36655443344433 589999999999999999987
No 216
>cd01381 MYSc_type_VII Myosin motor domain, type VII myosins. Myosins in this group have been associated with functions in sensory systems such as vision and hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydr
Probab=34.75 E-value=31 Score=43.65 Aligned_cols=35 Identities=26% Similarity=0.466 Sum_probs=26.4
Q ss_pred hHHhhhHHHHHHHh-cCCceeEEeecccCCCCceee
Q 001820 452 EVFSDMQPLIRSVL-DGYNVCIFAYGQTGSGKTYTM 486 (1009)
Q Consensus 452 eVF~~v~pLV~svL-dG~N~~IfAYGqTGSGKTyTM 486 (1009)
-||.........++ .|.|-||+.-|.+|||||.|.
T Consensus 68 HifavA~~Ay~~m~~~~~~QsIiisGESGaGKTes~ 103 (671)
T cd01381 68 HIFAISDNAYTNMQREKKNQCIIISGESGAGKTEST 103 (671)
T ss_pred CHHHHHHHHHHHHHHcCCCceEEEEcCCCCCeehHH
Confidence 36665444444443 589999999999999999987
No 217
>PRK10865 protein disaggregation chaperone; Provisional
Probab=34.73 E-value=24 Score=45.79 Aligned_cols=45 Identities=29% Similarity=0.333 Sum_probs=29.1
Q ss_pred EEeceeeCCCCChHhHHhhhHHHHHHHhcCCc------eeEEeecccCCCCceee
Q 001820 438 FSFNKVYGPSATQAEVFSDMQPLIRSVLDGYN------VCIFAYGQTGSGKTYTM 486 (1009)
Q Consensus 438 F~FD~VF~~~atQeeVF~~v~pLV~svLdG~N------~~IfAYGqTGSGKTyTM 486 (1009)
.-+.+|+| |..+-..+...|..+..|.. +.++-+|++|+|||++.
T Consensus 565 ~l~~~viG----Q~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA 615 (857)
T PRK10865 565 ELHHRVIG----QNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELC 615 (857)
T ss_pred HhCCeEeC----CHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHH
Confidence 34556765 45555555544554444432 57788899999999976
No 218
>cd01387 MYSc_type_XV Myosin motor domain, type XV myosins. In vertebrates, myosin XV appears to be expressed in sensory tissue and play a role in hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis caus
Probab=34.66 E-value=29 Score=43.90 Aligned_cols=35 Identities=29% Similarity=0.471 Sum_probs=27.0
Q ss_pred hHHhhhHHHHHHHh-cCCceeEEeecccCCCCceee
Q 001820 452 EVFSDMQPLIRSVL-DGYNVCIFAYGQTGSGKTYTM 486 (1009)
Q Consensus 452 eVF~~v~pLV~svL-dG~N~~IfAYGqTGSGKTyTM 486 (1009)
-||.-.......++ .|.|-||+.-|.+|||||.|.
T Consensus 69 HifavA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~ 104 (677)
T cd01387 69 HLFAIANLAFAKMLDAKQNQCVIISGESGSGKTEAT 104 (677)
T ss_pred CHHHHHHHHHHHHHhcCCCceEEEEcCCCCCeehHH
Confidence 36665544444444 699999999999999999987
No 219
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=34.61 E-value=16 Score=42.05 Aligned_cols=16 Identities=50% Similarity=0.625 Sum_probs=13.4
Q ss_pred eeEEeecccCCCCcee
Q 001820 470 VCIFAYGQTGSGKTYT 485 (1009)
Q Consensus 470 ~~IfAYGqTGSGKTyT 485 (1009)
+-|+..|+||||||+.
T Consensus 98 SNILLiGPTGsGKTlL 113 (408)
T COG1219 98 SNILLIGPTGSGKTLL 113 (408)
T ss_pred ccEEEECCCCCcHHHH
Confidence 4578899999999963
No 220
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=34.44 E-value=19 Score=45.17 Aligned_cols=39 Identities=13% Similarity=0.314 Sum_probs=24.7
Q ss_pred ChHhHHhhhHHHHHHHhcCC--ceeEEeecccCCCCceeec
Q 001820 449 TQAEVFSDMQPLIRSVLDGY--NVCIFAYGQTGSGKTYTMT 487 (1009)
Q Consensus 449 tQeeVF~~v~pLV~svLdG~--N~~IfAYGqTGSGKTyTM~ 487 (1009)
-|......+..++..+.-+. .-.++-||++|+|||.++.
T Consensus 88 ~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~ 128 (637)
T TIGR00602 88 VHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIK 128 (637)
T ss_pred CcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHH
Confidence 34444445555555544332 1247889999999999883
No 221
>PF05729 NACHT: NACHT domain
Probab=34.18 E-value=16 Score=36.07 Aligned_cols=16 Identities=31% Similarity=0.663 Sum_probs=14.1
Q ss_pred eEEeecccCCCCceee
Q 001820 471 CIFAYGQTGSGKTYTM 486 (1009)
Q Consensus 471 ~IfAYGqTGSGKTyTM 486 (1009)
.++-+|..|+|||..|
T Consensus 2 ~l~I~G~~G~GKStll 17 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLL 17 (166)
T ss_pred EEEEECCCCCChHHHH
Confidence 3678999999999988
No 222
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=34.10 E-value=2.7e+02 Score=31.38 Aligned_cols=28 Identities=4% Similarity=0.162 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 001820 322 KMIFDQQHEDIQELKHTLHTTKAGIQFM 349 (1009)
Q Consensus 322 ~~~~~~~~~~~~~l~~~l~~~k~~~~~~ 349 (1009)
+..+..++.++..|+.....+...+..+
T Consensus 222 r~~~~~l~~el~~l~~~~~~Le~~l~~l 249 (312)
T PF00038_consen 222 RRQIQSLQAELESLRAKNASLERQLREL 249 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhhHhhhhhhccccchhhhhhhHHHH
Confidence 3333344444333333333333333333
No 223
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=34.01 E-value=3.7e+02 Score=30.67 Aligned_cols=45 Identities=27% Similarity=0.511 Sum_probs=26.2
Q ss_pred eEEeecccCCCCceee--------------cCCCCCCccccchhhHHHHHHHHHHHHhcc
Q 001820 471 CIFAYGQTGSGKTYTM--------------TGPRELTEKSQGVNYRALSDLFLIAEQRKD 516 (1009)
Q Consensus 471 ~IfAYGqTGSGKTyTM--------------~G~~~~~~~~~GIipRal~dLF~~~~~~~~ 516 (1009)
-++.||+.|+|||..- -||.- ..---|=-.+.+++-|...+++..
T Consensus 207 GvLmYGPPGTGKTlmARAcAaqT~aTFLKLAgPQL-VQMfIGdGAkLVRDAFaLAKEkaP 265 (424)
T KOG0652|consen 207 GVLMYGPPGTGKTLMARACAAQTNATFLKLAGPQL-VQMFIGDGAKLVRDAFALAKEKAP 265 (424)
T ss_pred ceEeeCCCCCcHHHHHHHHHHhccchHHHhcchHH-HhhhhcchHHHHHHHHHHhhccCC
Confidence 4899999999998532 12110 000112224566788887776655
No 224
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=33.34 E-value=30 Score=44.41 Aligned_cols=37 Identities=24% Similarity=0.278 Sum_probs=26.2
Q ss_pred hHhHHhhhHHHHHHHhcCC------ceeEEeecccCCCCceee
Q 001820 450 QAEVFSDMQPLIRSVLDGY------NVCIFAYGQTGSGKTYTM 486 (1009)
Q Consensus 450 QeeVF~~v~pLV~svLdG~------N~~IfAYGqTGSGKTyTM 486 (1009)
|++.-+.+...|.....|. .+.++-+|+||+|||++.
T Consensus 463 Q~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lA 505 (758)
T PRK11034 463 QDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVT 505 (758)
T ss_pred cHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHH
Confidence 5555555555555555554 357899999999999886
No 225
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=33.14 E-value=15 Score=35.90 Aligned_cols=16 Identities=50% Similarity=0.750 Sum_probs=13.5
Q ss_pred EEeecccCCCCceeec
Q 001820 472 IFAYGQTGSGKTYTMT 487 (1009)
Q Consensus 472 IfAYGqTGSGKTyTM~ 487 (1009)
++-||++|+|||+.+.
T Consensus 2 ~~i~G~~G~GKT~l~~ 17 (165)
T cd01120 2 ILVFGPTGSGKTTLAL 17 (165)
T ss_pred eeEeCCCCCCHHHHHH
Confidence 5679999999999773
No 226
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=32.97 E-value=23 Score=42.85 Aligned_cols=50 Identities=24% Similarity=0.359 Sum_probs=28.6
Q ss_pred eEEeceeeCCCCChHhHHhhhHHHHH-HHhc--C--CceeEEeecccCCCCceee
Q 001820 437 SFSFNKVYGPSATQAEVFSDMQPLIR-SVLD--G--YNVCIFAYGQTGSGKTYTM 486 (1009)
Q Consensus 437 ~F~FD~VF~~~atQeeVF~~v~pLV~-svLd--G--~N~~IfAYGqTGSGKTyTM 486 (1009)
..+||.|.+.+...+++.+.+..+-. ..+. | ..-.|+-||++|+|||+..
T Consensus 51 ~~~~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la 105 (495)
T TIGR01241 51 KVTFKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLA 105 (495)
T ss_pred CCCHHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHH
Confidence 46788887665444444332222110 0111 2 2235888999999999986
No 227
>PHA02653 RNA helicase NPH-II; Provisional
Probab=32.96 E-value=30 Score=43.81 Aligned_cols=24 Identities=29% Similarity=0.369 Sum_probs=18.2
Q ss_pred HHHHHhcCCceeEEeecccCCCCcee
Q 001820 460 LIRSVLDGYNVCIFAYGQTGSGKTYT 485 (1009)
Q Consensus 460 LV~svLdG~N~~IfAYGqTGSGKTyT 485 (1009)
++..++.|.++ +..|+||||||..
T Consensus 172 il~~i~~gkdv--Iv~A~TGSGKTtq 195 (675)
T PHA02653 172 IFEAWISRKPV--VLTGGTGVGKTSQ 195 (675)
T ss_pred HHHHHHhCCCE--EEECCCCCCchhH
Confidence 44555667654 8899999999975
No 228
>PRK11637 AmiB activator; Provisional
Probab=32.87 E-value=2.9e+02 Score=32.93 Aligned_cols=16 Identities=19% Similarity=0.356 Sum_probs=11.0
Q ss_pred CCCCceEEEEEEeeee
Q 001820 595 SSRSHSCLTVHVQGKD 610 (1009)
Q Consensus 595 SSRSH~IftI~V~~~~ 610 (1009)
+...|+.|.|+..+..
T Consensus 404 ~~~~~l~fei~~~~~~ 419 (428)
T PRK11637 404 QGRPSLYFEIRRQGQA 419 (428)
T ss_pred CCCCeEEEEEEECCEE
Confidence 3457888888876543
No 229
>cd01382 MYSc_type_VI Myosin motor domain, type VI myosins. Myosin VI is a monomeric myosin, which moves towards the minus-end of actin filaments, in contrast to most other myosins. It has been implicated in endocytosis, secretion, and cell migration. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the minus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of
Probab=32.69 E-value=30 Score=44.09 Aligned_cols=34 Identities=26% Similarity=0.340 Sum_probs=26.1
Q ss_pred HHhhhHHHHHHHh-cCCceeEEeecccCCCCceee
Q 001820 453 VFSDMQPLIRSVL-DGYNVCIFAYGQTGSGKTYTM 486 (1009)
Q Consensus 453 VF~~v~pLV~svL-dG~N~~IfAYGqTGSGKTyTM 486 (1009)
||.-.......++ .|.|-||+.-|.+|||||.|.
T Consensus 74 ifaiA~~Ay~~m~~~~~~QsIiisGESGaGKTes~ 108 (717)
T cd01382 74 VFAIADKAYRDMKVLKMSQSIIVSGESGAGKTENT 108 (717)
T ss_pred HHHHHHHHHHHHHhcCCCCeEEEecCCCCChhHHH
Confidence 6665444444443 689999999999999999987
No 230
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=32.65 E-value=26 Score=42.98 Aligned_cols=41 Identities=27% Similarity=0.452 Sum_probs=26.3
Q ss_pred EeceeeCCCCChHhHHhhhHHHHHHHhcCCceeEEeecccCCCCceee
Q 001820 439 SFNKVYGPSATQAEVFSDMQPLIRSVLDGYNVCIFAYGQTGSGKTYTM 486 (1009)
Q Consensus 439 ~FD~VF~~~atQeeVF~~v~pLV~svLdG~N~~IfAYGqTGSGKTyTM 486 (1009)
.|+.+++.+ .. ++.+...++......|+-||++|+|||+.-
T Consensus 63 ~f~~iiGqs----~~---i~~l~~al~~~~~~~vLi~Ge~GtGKt~lA 103 (531)
T TIGR02902 63 SFDEIIGQE----EG---IKALKAALCGPNPQHVIIYGPPGVGKTAAA 103 (531)
T ss_pred CHHHeeCcH----HH---HHHHHHHHhCCCCceEEEECCCCCCHHHHH
Confidence 466666643 22 233333345566677888999999998754
No 231
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=32.63 E-value=26 Score=45.25 Aligned_cols=32 Identities=19% Similarity=0.292 Sum_probs=23.5
Q ss_pred HHhhhHHHHHHHhcCCceeEEeecccCCCCceee
Q 001820 453 VFSDMQPLIRSVLDGYNVCIFAYGQTGSGKTYTM 486 (1009)
Q Consensus 453 VF~~v~pLV~svLdG~N~~IfAYGqTGSGKTyTM 486 (1009)
||.....+++.+-++.+ |+..|+||||||..+
T Consensus 6 i~~~~~~i~~~l~~~~~--vvv~A~TGSGKTt~~ 37 (812)
T PRK11664 6 VAAVLPELLTALKTAPQ--VLLKAPTGAGKSTWL 37 (812)
T ss_pred HHHHHHHHHHHHHhCCC--EEEEcCCCCCHHHHH
Confidence 55555667777665543 677999999999876
No 232
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=32.32 E-value=24 Score=43.72 Aligned_cols=26 Identities=35% Similarity=0.433 Sum_probs=20.7
Q ss_pred HHHHHHhcCCceeEEeecccCCCCceee
Q 001820 459 PLIRSVLDGYNVCIFAYGQTGSGKTYTM 486 (1009)
Q Consensus 459 pLV~svLdG~N~~IfAYGqTGSGKTyTM 486 (1009)
..|..+++|.|+ ++..+||||||.+.
T Consensus 38 ~~ip~~l~G~Dv--i~~ApTGSGKTlaf 63 (572)
T PRK04537 38 LTLPVALPGGDV--AGQAQTGTGKTLAF 63 (572)
T ss_pred HHHHHHhCCCCE--EEEcCCCCcHHHHH
Confidence 456778999995 55779999999764
No 233
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=32.26 E-value=32 Score=43.98 Aligned_cols=17 Identities=41% Similarity=0.427 Sum_probs=15.4
Q ss_pred eeEEeecccCCCCceee
Q 001820 470 VCIFAYGQTGSGKTYTM 486 (1009)
Q Consensus 470 ~~IfAYGqTGSGKTyTM 486 (1009)
.+|.-.|+||+|||+|+
T Consensus 186 ~Vi~lVGpnGvGKTTTi 202 (767)
T PRK14723 186 GVLALVGPTGVGKTTTT 202 (767)
T ss_pred eEEEEECCCCCcHHHHH
Confidence 47888999999999998
No 234
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=31.99 E-value=24 Score=44.34 Aligned_cols=27 Identities=26% Similarity=0.412 Sum_probs=18.7
Q ss_pred HHHHhcCCceeEEeecccCCCCceeecC
Q 001820 461 IRSVLDGYNVCIFAYGQTGSGKTYTMTG 488 (1009)
Q Consensus 461 V~svLdG~N~~IfAYGqTGSGKTyTM~G 488 (1009)
|..++.... .++-.|++|||||||+..
T Consensus 166 v~~~l~~~~-~~lI~GpPGTGKT~t~~~ 192 (637)
T TIGR00376 166 VSFALSSKD-LFLIHGPPGTGKTRTLVE 192 (637)
T ss_pred HHHHhcCCC-eEEEEcCCCCCHHHHHHH
Confidence 344444322 356899999999999854
No 235
>PRK11637 AmiB activator; Provisional
Probab=31.88 E-value=3.3e+02 Score=32.49 Aligned_cols=9 Identities=22% Similarity=0.711 Sum_probs=4.9
Q ss_pred Ccccccccc
Q 001820 931 SEPDLLWQF 939 (1009)
Q Consensus 931 s~~~~~~~~ 939 (1009)
..+.|.|++
T Consensus 405 ~~~~l~fei 413 (428)
T PRK11637 405 GRPSLYFEI 413 (428)
T ss_pred CCCeEEEEE
Confidence 345566654
No 236
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=31.78 E-value=16 Score=39.83 Aligned_cols=20 Identities=35% Similarity=0.536 Sum_probs=17.0
Q ss_pred ceeEEeecccCCCCceeecC
Q 001820 469 NVCIFAYGQTGSGKTYTMTG 488 (1009)
Q Consensus 469 N~~IfAYGqTGSGKTyTM~G 488 (1009)
...++-||..|+|||++.-+
T Consensus 12 ~~~~liyG~~G~GKtt~a~~ 31 (220)
T TIGR01618 12 PNMYLIYGKPGTGKTSTIKY 31 (220)
T ss_pred CcEEEEECCCCCCHHHHHHh
Confidence 45699999999999998754
No 237
>cd01380 MYSc_type_V Myosin motor domain, type V myosins. Myosins V transport a variety of intracellular cargo processively along actin filaments, such as membraneous organelles and mRNA. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an act
Probab=31.78 E-value=35 Score=43.35 Aligned_cols=34 Identities=26% Similarity=0.453 Sum_probs=26.1
Q ss_pred HHhhhHHHHHHHh-cCCceeEEeecccCCCCceee
Q 001820 453 VFSDMQPLIRSVL-DGYNVCIFAYGQTGSGKTYTM 486 (1009)
Q Consensus 453 VF~~v~pLV~svL-dG~N~~IfAYGqTGSGKTyTM 486 (1009)
||.-.......++ .|.|-||+.-|.+|||||.+.
T Consensus 69 ifaiA~~Ay~~m~~~~~~QsIiiSGESGaGKTes~ 103 (691)
T cd01380 69 IFAIAEEAYKQMTRDEKNQSIIVSGESGAGKTVSA 103 (691)
T ss_pred HHHHHHHHHHHHHhcCCCceEEEEcCCCCCchHHH
Confidence 6655444444444 699999999999999999886
No 238
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=31.69 E-value=16 Score=41.14 Aligned_cols=21 Identities=38% Similarity=0.697 Sum_probs=18.3
Q ss_pred cCCceeEEeecccCCCCceee
Q 001820 466 DGYNVCIFAYGQTGSGKTYTM 486 (1009)
Q Consensus 466 dG~N~~IfAYGqTGSGKTyTM 486 (1009)
.|++-+||..|++|+|||.-+
T Consensus 1 kg~~fnImVvG~sG~GKTTFI 21 (281)
T PF00735_consen 1 KGFNFNIMVVGESGLGKTTFI 21 (281)
T ss_dssp HEEEEEEEEEECTTSSHHHHH
T ss_pred CCceEEEEEECCCCCCHHHHH
Confidence 388999999999999998654
No 239
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=31.58 E-value=31 Score=41.99 Aligned_cols=26 Identities=35% Similarity=0.526 Sum_probs=20.1
Q ss_pred HHHHHHhcCCceeEEeecccCCCCceee
Q 001820 459 PLIRSVLDGYNVCIFAYGQTGSGKTYTM 486 (1009)
Q Consensus 459 pLV~svLdG~N~~IfAYGqTGSGKTyTM 486 (1009)
..+..++.|.|+ ++..+||||||.+.
T Consensus 150 ~aip~il~g~dv--iv~ApTGSGKTlay 175 (518)
T PLN00206 150 QAIPAALSGRSL--LVSADTGSGKTASF 175 (518)
T ss_pred HHHHHHhcCCCE--EEEecCCCCccHHH
Confidence 456778899874 66779999999653
No 240
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=31.56 E-value=33 Score=38.02 Aligned_cols=26 Identities=35% Similarity=0.511 Sum_probs=18.2
Q ss_pred HHHHHHhcCCceeEEeecccCCCCceee
Q 001820 459 PLIRSVLDGYNVCIFAYGQTGSGKTYTM 486 (1009)
Q Consensus 459 pLV~svLdG~N~~IfAYGqTGSGKTyTM 486 (1009)
.++..+..|.++. -+|++|+|||...
T Consensus 13 ~~l~~l~~g~~vL--L~G~~GtGKT~lA 38 (262)
T TIGR02640 13 RALRYLKSGYPVH--LRGPAGTGKTTLA 38 (262)
T ss_pred HHHHHHhcCCeEE--EEcCCCCCHHHHH
Confidence 3444455666554 5899999998765
No 241
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=31.40 E-value=30 Score=41.03 Aligned_cols=20 Identities=15% Similarity=0.185 Sum_probs=16.6
Q ss_pred CCCCeEEEeCCHHHHHHHHH
Q 001820 559 VPDASLIPVSSTADVINLMN 578 (1009)
Q Consensus 559 V~glt~v~V~S~eev~~lL~ 578 (1009)
+-|+....|.++.|+...+.
T Consensus 258 im~vp~~vv~~~~el~~ai~ 277 (407)
T COG1419 258 IMGVPLEVVYSPKELAEAIE 277 (407)
T ss_pred HhCCceEEecCHHHHHHHHH
Confidence 56778888999999988775
No 242
>cd01377 MYSc_type_II Myosin motor domain, type II myosins. Myosin II mediates cortical contraction in cell motility, and is the motor in smooth and skeletal muscle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydro
Probab=31.35 E-value=35 Score=43.32 Aligned_cols=35 Identities=34% Similarity=0.490 Sum_probs=26.7
Q ss_pred hHHhhhHHHHHHHh-cCCceeEEeecccCCCCceee
Q 001820 452 EVFSDMQPLIRSVL-DGYNVCIFAYGQTGSGKTYTM 486 (1009)
Q Consensus 452 eVF~~v~pLV~svL-dG~N~~IfAYGqTGSGKTyTM 486 (1009)
-||.-.......++ .|.|-||+.-|.+|||||.|.
T Consensus 73 HiyaiA~~Ay~~m~~~~~~QsIiiSGESGAGKTes~ 108 (693)
T cd01377 73 HIFAIADNAYRSMLQDRENQSILITGESGAGKTENT 108 (693)
T ss_pred CHHHHHHHHHHHHHhcCCCceEEEEcCCCCCchHHH
Confidence 46665444444444 599999999999999999886
No 243
>PRK00131 aroK shikimate kinase; Reviewed
Probab=30.41 E-value=22 Score=35.70 Aligned_cols=17 Identities=29% Similarity=0.296 Sum_probs=14.8
Q ss_pred eeEEeecccCCCCceee
Q 001820 470 VCIFAYGQTGSGKTYTM 486 (1009)
Q Consensus 470 ~~IfAYGqTGSGKTyTM 486 (1009)
.+|+-+|.+|||||+.-
T Consensus 5 ~~i~l~G~~GsGKstla 21 (175)
T PRK00131 5 PNIVLIGFMGAGKSTIG 21 (175)
T ss_pred CeEEEEcCCCCCHHHHH
Confidence 47899999999999874
No 244
>PHA02244 ATPase-like protein
Probab=30.31 E-value=38 Score=39.93 Aligned_cols=20 Identities=35% Similarity=0.408 Sum_probs=15.2
Q ss_pred hcCCceeEEeecccCCCCceee
Q 001820 465 LDGYNVCIFAYGQTGSGKTYTM 486 (1009)
Q Consensus 465 LdG~N~~IfAYGqTGSGKTyTM 486 (1009)
-.|.++ +-+|+||+|||+..
T Consensus 117 ~~~~PV--LL~GppGtGKTtLA 136 (383)
T PHA02244 117 NANIPV--FLKGGAGSGKNHIA 136 (383)
T ss_pred hcCCCE--EEECCCCCCHHHHH
Confidence 346655 44899999999876
No 245
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=30.28 E-value=26 Score=42.76 Aligned_cols=45 Identities=24% Similarity=0.333 Sum_probs=30.3
Q ss_pred eEEeceeeCCCCChHhHHhhhHHHHHHHhcCCceeEEeecccCCCCceee
Q 001820 437 SFSFNKVYGPSATQAEVFSDMQPLIRSVLDGYNVCIFAYGQTGSGKTYTM 486 (1009)
Q Consensus 437 ~F~FD~VF~~~atQeeVF~~v~pLV~svLdG~N~~IfAYGqTGSGKTyTM 486 (1009)
.+.|+.+++.+..=.++.+.+ ..+ ...+..|+-+|.+||||++.-
T Consensus 192 ~~~~~~liG~s~~~~~~~~~~----~~~-a~~~~pvli~Ge~GtGK~~lA 236 (534)
T TIGR01817 192 SGKEDGIIGKSPAMRQVVDQA----RVV-ARSNSTVLLRGESGTGKELIA 236 (534)
T ss_pred cCccCceEECCHHHHHHHHHH----HHH-hCcCCCEEEECCCCccHHHHH
Confidence 367788887655444444443 332 256788999999999998764
No 246
>PF13173 AAA_14: AAA domain
Probab=30.28 E-value=18 Score=35.23 Aligned_cols=16 Identities=38% Similarity=0.511 Sum_probs=14.4
Q ss_pred eEEeecccCCCCceee
Q 001820 471 CIFAYGQTGSGKTYTM 486 (1009)
Q Consensus 471 ~IfAYGqTGSGKTyTM 486 (1009)
.++-+|+.|+|||+.|
T Consensus 4 ~~~l~G~R~vGKTtll 19 (128)
T PF13173_consen 4 IIILTGPRGVGKTTLL 19 (128)
T ss_pred eEEEECCCCCCHHHHH
Confidence 5788999999999988
No 247
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=30.24 E-value=29 Score=37.00 Aligned_cols=28 Identities=29% Similarity=0.393 Sum_probs=21.8
Q ss_pred HHHHHHhcC---CceeEEeecccCCCCceee
Q 001820 459 PLIRSVLDG---YNVCIFAYGQTGSGKTYTM 486 (1009)
Q Consensus 459 pLV~svLdG---~N~~IfAYGqTGSGKTyTM 486 (1009)
+-++.++.| ...++.-+|++|||||..+
T Consensus 6 ~~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~ 36 (235)
T cd01123 6 KALDELLGGGIETGSITEIFGEFGSGKTQLC 36 (235)
T ss_pred hhhHhhccCCCCCCeEEEEECCCCCCHHHHH
Confidence 346777775 4567889999999999776
No 248
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=30.08 E-value=4e+02 Score=33.44 Aligned_cols=23 Identities=9% Similarity=0.049 Sum_probs=14.9
Q ss_pred HHHHHHcccchHHHHHHHhhcCC
Q 001820 69 EEFRLGLRSGIILCNVINKVQPG 91 (1009)
Q Consensus 69 e~f~~~LrDGvvLCkL~N~l~PG 91 (1009)
+++.+..+|+-=|.+++..+-||
T Consensus 57 DnvyEL~~~~~~li~il~~lP~~ 79 (652)
T COG2433 57 DNVYELGADKRDLIRILKRLPEG 79 (652)
T ss_pred ccHHHHhcChhHHHHHHHhCCCC
Confidence 45666666666666777666554
No 249
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=30.07 E-value=34 Score=43.64 Aligned_cols=37 Identities=27% Similarity=0.297 Sum_probs=25.0
Q ss_pred hHhHHhhhHHHHHHHhcCC------ceeEEeecccCCCCceee
Q 001820 450 QAEVFSDMQPLIRSVLDGY------NVCIFAYGQTGSGKTYTM 486 (1009)
Q Consensus 450 QeeVF~~v~pLV~svLdG~------N~~IfAYGqTGSGKTyTM 486 (1009)
|+++-+.+...|.....|. .+.++-+|+||+|||++.
T Consensus 459 Q~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA 501 (731)
T TIGR02639 459 QDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELA 501 (731)
T ss_pred cHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHH
Confidence 5555555555555544454 246788999999999876
No 250
>PF06048 DUF927: Domain of unknown function (DUF927); InterPro: IPR009270 This entry is represented by Bacteriophage PT1028, Orf1. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=30.05 E-value=36 Score=38.33 Aligned_cols=28 Identities=39% Similarity=0.590 Sum_probs=22.2
Q ss_pred HHHHHHHhcCCceeEEeecccCCCCceee
Q 001820 458 QPLIRSVLDGYNVCIFAYGQTGSGKTYTM 486 (1009)
Q Consensus 458 ~pLV~svLdG~N~~IfAYGqTGSGKTyTM 486 (1009)
.||+ ..+.--+..|-.||+|++|||.++
T Consensus 183 ~pLL-~~l~~~~~~~hl~G~Ss~GKTt~~ 210 (286)
T PF06048_consen 183 APLL-SLLGVEGFGFHLYGQSSSGKTTAL 210 (286)
T ss_pred HHHH-HHhCCCceEEEEEeCCCCCHHHHH
Confidence 3444 556677778999999999999887
No 251
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=29.64 E-value=18 Score=42.10 Aligned_cols=46 Identities=28% Similarity=0.432 Sum_probs=31.2
Q ss_pred ceeEEeceeeCCCCChHhHHhhhHHHHHHHhcCCceeEEeecccCCCCceeec
Q 001820 435 WKSFSFNKVYGPSATQAEVFSDMQPLIRSVLDGYNVCIFAYGQTGSGKTYTMT 487 (1009)
Q Consensus 435 ~k~F~FD~VF~~~atQeeVF~~v~pLV~svLdG~N~~IfAYGqTGSGKTyTM~ 487 (1009)
...|.|+.|-+. +++= .-|+..+.+-.-+-|+-+|.+|||||+.+-
T Consensus 11 ~~~~pf~~ivGq----~~~k---~al~~~~~~p~~~~vli~G~~GtGKs~~ar 56 (350)
T CHL00081 11 RPVFPFTAIVGQ----EEMK---LALILNVIDPKIGGVMIMGDRGTGKSTTIR 56 (350)
T ss_pred CCCCCHHHHhCh----HHHH---HHHHHhccCCCCCeEEEEcCCCCCHHHHHH
Confidence 457888888764 3322 344555555444568899999999999883
No 252
>KOG2077 consensus JNK/SAPK-associated protein-1 [Signal transduction mechanisms]
Probab=29.37 E-value=1e+02 Score=37.87 Aligned_cols=43 Identities=16% Similarity=0.258 Sum_probs=25.9
Q ss_pred HhcCCCCCCCCCchhhHhhhhhcCCCceeeEEEecCCCCCcHHHHH
Q 001820 662 LAQKNPHVPYRNSKLTQLLQDSLGGQAKTLMFVHISPEPDAVGETI 707 (1009)
Q Consensus 662 La~k~~hIPYRdSKLT~LLqdsLGGnskT~mI~~ISP~~~~~~ETl 707 (1009)
++..+.-.-.-.|-|.|++-..+ +.+++++|=...|. ++-+|+
T Consensus 630 ~a~e~~e~~~q~SSlVWi~tSt~-~~skv~iiDAnqPg--ni~d~F 672 (832)
T KOG2077|consen 630 LAEEQKELKNQESSLVWICTSTH-SASKVLIIDANQPG--NILDSF 672 (832)
T ss_pred HhhhhhhhhccccceEEEEecCC-CcceEEEEecCCCC--chhhcc
Confidence 33333334444577777775444 56788888777776 554543
No 253
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=29.32 E-value=39 Score=40.51 Aligned_cols=18 Identities=44% Similarity=0.698 Sum_probs=15.1
Q ss_pred eeEEeecccCCCCceeec
Q 001820 470 VCIFAYGQTGSGKTYTMT 487 (1009)
Q Consensus 470 ~~IfAYGqTGSGKTyTM~ 487 (1009)
..|+..|++|+|||+|..
T Consensus 224 ~vi~lvGptGvGKTTtaa 241 (432)
T PRK12724 224 KVVFFVGPTGSGKTTSIA 241 (432)
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 457778999999999983
No 254
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=29.14 E-value=38 Score=43.02 Aligned_cols=43 Identities=33% Similarity=0.495 Sum_probs=29.6
Q ss_pred ceeeCCCCChHhHHhh---h----HHHHHHHhcCCceeEEeecccCCCCceee
Q 001820 441 NKVYGPSATQAEVFSD---M----QPLIRSVLDGYNVCIFAYGQTGSGKTYTM 486 (1009)
Q Consensus 441 D~VF~~~atQeeVF~~---v----~pLV~svLdG~N~~IfAYGqTGSGKTyTM 486 (1009)
++-+++++-|..+|-. + ..+++.+| |.|+.|-+ +||+|||+.-
T Consensus 44 ~~~~~~s~~~~~~~p~~~~lR~YQ~eivq~AL-gkNtii~l--PTG~GKTfIA 93 (746)
T KOG0354|consen 44 SHSLDESAAQRWIYPTNLELRNYQEELVQPAL-GKNTIIAL--PTGSGKTFIA 93 (746)
T ss_pred cCCCChhhhccccccCcccccHHHHHHhHHhh-cCCeEEEe--ecCCCccchH
Confidence 3444555555555532 1 35888899 99987765 9999999853
No 255
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=29.05 E-value=28 Score=41.22 Aligned_cols=37 Identities=30% Similarity=0.468 Sum_probs=26.6
Q ss_pred ChHhHHhhhHHHHHHHhcCCceeEEeecccCCCCcee
Q 001820 449 TQAEVFSDMQPLIRSVLDGYNVCIFAYGQTGSGKTYT 485 (1009)
Q Consensus 449 tQeeVF~~v~pLV~svLdG~N~~IfAYGqTGSGKTyT 485 (1009)
.|+.+...-.+|=+-+-.|.=...+-||+.|+|||..
T Consensus 28 GQ~HLlg~~~~lrr~v~~~~l~SmIl~GPPG~GKTTl 64 (436)
T COG2256 28 GQEHLLGEGKPLRRAVEAGHLHSMILWGPPGTGKTTL 64 (436)
T ss_pred ChHhhhCCCchHHHHHhcCCCceeEEECCCCCCHHHH
Confidence 4666665544554445567777888999999999974
No 256
>PF02456 Adeno_IVa2: Adenovirus IVa2 protein; InterPro: IPR003389 Va2 protein can interact with the adenoviral packaging signal and this interaction involves DNA sequences that have previously been demonstrated to be required for packaging []. During the course of lytic infection, the adenovirus major late promoter (MLP) is induced to high levels after replication of viral DNA has started. IVa2 is a transcriptional activator of the major late promoter [].; GO: 0019083 viral transcription
Probab=29.04 E-value=20 Score=41.15 Aligned_cols=16 Identities=44% Similarity=0.669 Sum_probs=13.3
Q ss_pred EEeecccCCCCceeec
Q 001820 472 IFAYGQTGSGKTYTMT 487 (1009)
Q Consensus 472 IfAYGqTGSGKTyTM~ 487 (1009)
...||+|||||++-+-
T Consensus 90 ~~VYGPTG~GKSqLlR 105 (369)
T PF02456_consen 90 GVVYGPTGSGKSQLLR 105 (369)
T ss_pred EEEECCCCCCHHHHHH
Confidence 3459999999999874
No 257
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=28.81 E-value=2.3e+02 Score=31.10 Aligned_cols=20 Identities=40% Similarity=0.609 Sum_probs=13.3
Q ss_pred HHhhhhHHHHHHhhhhhhhh
Q 001820 370 AASGYHRVLEENRKLYNQVQ 389 (1009)
Q Consensus 370 ~~~~~~~~~~e~r~l~n~~q 389 (1009)
....|.+.++|.-+|-++++
T Consensus 191 ~~~EydrLlee~~~Lq~~i~ 210 (216)
T KOG1962|consen 191 LQDEYDRLLEEYSKLQEQIE 210 (216)
T ss_pred cccHHHHHHHHHHHHHHHHh
Confidence 34567777777777766664
No 258
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=28.72 E-value=42 Score=40.29 Aligned_cols=54 Identities=22% Similarity=0.352 Sum_probs=29.8
Q ss_pred hHHHHHHHhcCCceeEEeecccCCCCceeecCCCCCCccccchhhHHHHHHHHHHHH
Q 001820 457 MQPLIRSVLDGYNVCIFAYGQTGSGKTYTMTGPRELTEKSQGVNYRALSDLFLIAEQ 513 (1009)
Q Consensus 457 v~pLV~svLdG~N~~IfAYGqTGSGKTyTM~G~~~~~~~~~GIipRal~dLF~~~~~ 513 (1009)
+..++.-+=.++|.+ -.|++|+||||.-.+-.....-..| -+-.+..||..+..
T Consensus 199 L~rl~~fve~~~Nli--~lGp~GTGKThla~~l~~~~a~~sG-~f~T~a~Lf~~L~~ 252 (449)
T TIGR02688 199 LARLLPLVEPNYNLI--ELGPKGTGKSYIYNNLSPYVILISG-GTITVAKLFYNIST 252 (449)
T ss_pred HHhhHHHHhcCCcEE--EECCCCCCHHHHHHHHhHHHHHHcC-CcCcHHHHHHHHHH
Confidence 444444445677765 4699999999887541100001123 23335667766654
No 259
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=28.69 E-value=18 Score=31.84 Aligned_cols=15 Identities=33% Similarity=0.563 Sum_probs=12.6
Q ss_pred EEeecccCCCCceee
Q 001820 472 IFAYGQTGSGKTYTM 486 (1009)
Q Consensus 472 IfAYGqTGSGKTyTM 486 (1009)
.+-+|++|||||..|
T Consensus 26 tli~G~nGsGKSTll 40 (62)
T PF13555_consen 26 TLITGPNGSGKSTLL 40 (62)
T ss_pred EEEECCCCCCHHHHH
Confidence 456899999999776
No 260
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=28.67 E-value=52 Score=42.03 Aligned_cols=24 Identities=29% Similarity=0.311 Sum_probs=18.7
Q ss_pred CccccchhhHHHHHHHHHHHHhcc
Q 001820 493 TEKSQGVNYRALSDLFLIAEQRKD 516 (1009)
Q Consensus 493 ~~~~~GIipRal~dLF~~~~~~~~ 516 (1009)
..+.-|++.|.+.+|...+....+
T Consensus 783 sGDSGGVMDRVVSQLLAELDgls~ 806 (953)
T KOG0736|consen 783 SGDSGGVMDRVVSQLLAELDGLSD 806 (953)
T ss_pred CCCccccHHHHHHHHHHHhhcccC
Confidence 345679999999999998876543
No 261
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=28.60 E-value=20 Score=43.52 Aligned_cols=18 Identities=39% Similarity=0.398 Sum_probs=15.6
Q ss_pred eeEEeecccCCCCceeec
Q 001820 470 VCIFAYGQTGSGKTYTMT 487 (1009)
Q Consensus 470 ~~IfAYGqTGSGKTyTM~ 487 (1009)
..|.-.|+||+|||+|+-
T Consensus 257 ~Vi~LvGpnGvGKTTTia 274 (484)
T PRK06995 257 GVFALMGPTGVGKTTTTA 274 (484)
T ss_pred cEEEEECCCCccHHHHHH
Confidence 467889999999999983
No 262
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=28.59 E-value=29 Score=42.90 Aligned_cols=27 Identities=37% Similarity=0.587 Sum_probs=21.1
Q ss_pred HHHHHHHhcCCceeEEeecccCCCCceee
Q 001820 458 QPLIRSVLDGYNVCIFAYGQTGSGKTYTM 486 (1009)
Q Consensus 458 ~pLV~svLdG~N~~IfAYGqTGSGKTyTM 486 (1009)
..+|..+++|.|+ ++..+||+|||.+.
T Consensus 19 ~~~i~~il~g~dv--lv~~PTG~GKTl~y 45 (591)
T TIGR01389 19 EEIISHVLDGRDV--LVVMPTGGGKSLCY 45 (591)
T ss_pred HHHHHHHHcCCCE--EEEcCCCccHhHHH
Confidence 3567778999986 45569999999874
No 263
>PRK04328 hypothetical protein; Provisional
Probab=28.49 E-value=36 Score=37.42 Aligned_cols=26 Identities=27% Similarity=0.492 Sum_probs=20.8
Q ss_pred HHHHHHhcC---CceeEEeecccCCCCce
Q 001820 459 PLIRSVLDG---YNVCIFAYGQTGSGKTY 484 (1009)
Q Consensus 459 pLV~svLdG---~N~~IfAYGqTGSGKTy 484 (1009)
+-++.+|.| ...+++-+|.+|+|||.
T Consensus 10 ~~LD~lL~GGip~gs~ili~G~pGsGKT~ 38 (249)
T PRK04328 10 PGMDEILYGGIPERNVVLLSGGPGTGKSI 38 (249)
T ss_pred hhHHHHhcCCCcCCcEEEEEcCCCCCHHH
Confidence 346777876 57888999999999975
No 264
>PF13476 AAA_23: AAA domain; PDB: 3AV0_B 3AUY_B 3AUX_A 2O5V_A 3QG5_B 3QF7_A 3THO_A.
Probab=28.42 E-value=20 Score=36.56 Aligned_cols=17 Identities=35% Similarity=0.526 Sum_probs=14.2
Q ss_pred eeEEeecccCCCCceee
Q 001820 470 VCIFAYGQTGSGKTYTM 486 (1009)
Q Consensus 470 ~~IfAYGqTGSGKTyTM 486 (1009)
...+-||.+|+|||..|
T Consensus 20 g~~vi~G~Ng~GKStil 36 (202)
T PF13476_consen 20 GLNVIYGPNGSGKSTIL 36 (202)
T ss_dssp EEEEEEESTTSSHHHHH
T ss_pred CcEEEECCCCCCHHHHH
Confidence 35567899999999887
No 265
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=28.38 E-value=5.1e+02 Score=27.98 Aligned_cols=17 Identities=18% Similarity=0.522 Sum_probs=9.9
Q ss_pred hhhhHHHHHHhhhhhhh
Q 001820 372 SGYHRVLEENRKLYNQV 388 (1009)
Q Consensus 372 ~~~~~~~~e~r~l~n~~ 388 (1009)
..|.++..||..||...
T Consensus 114 qr~~kle~ErdeL~~kf 130 (201)
T PF13851_consen 114 QRFEKLEQERDELYRKF 130 (201)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45566666666666543
No 266
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=28.35 E-value=29 Score=36.44 Aligned_cols=25 Identities=36% Similarity=0.484 Sum_probs=18.3
Q ss_pred HHHhcCC---ceeEEeecccCCCCceee
Q 001820 462 RSVLDGY---NVCIFAYGQTGSGKTYTM 486 (1009)
Q Consensus 462 ~svLdG~---N~~IfAYGqTGSGKTyTM 486 (1009)
+.+|.|- ...+.-||++|||||...
T Consensus 2 D~~l~GGi~~g~i~~i~G~~GsGKT~l~ 29 (209)
T TIGR02237 2 DELLGGGVERGTITQIYGPPGSGKTNIC 29 (209)
T ss_pred hhhhcCCCCCCeEEEEECCCCCCHHHHH
Confidence 3445443 567889999999998765
No 267
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=28.34 E-value=23 Score=39.70 Aligned_cols=21 Identities=29% Similarity=0.632 Sum_probs=18.9
Q ss_pred cCCceeEEeecccCCCCceee
Q 001820 466 DGYNVCIFAYGQTGSGKTYTM 486 (1009)
Q Consensus 466 dG~N~~IfAYGqTGSGKTyTM 486 (1009)
.|+...|+..|++|+|||..+
T Consensus 1 ~g~~f~I~vvG~sg~GKSTli 21 (276)
T cd01850 1 KGFQFNIMVVGESGLGKSTFI 21 (276)
T ss_pred CCcEEEEEEEcCCCCCHHHHH
Confidence 489999999999999998766
No 268
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=28.34 E-value=36 Score=42.45 Aligned_cols=26 Identities=31% Similarity=0.515 Sum_probs=20.1
Q ss_pred HHHHHHhcCCceeEEeecccCCCCceee
Q 001820 459 PLIRSVLDGYNVCIFAYGQTGSGKTYTM 486 (1009)
Q Consensus 459 pLV~svLdG~N~~IfAYGqTGSGKTyTM 486 (1009)
..|..++.|.++.+. ++||||||.+.
T Consensus 32 ~ai~~il~g~dvlv~--apTGsGKTl~y 57 (607)
T PRK11057 32 EIIDAVLSGRDCLVV--MPTGGGKSLCY 57 (607)
T ss_pred HHHHHHHcCCCEEEE--cCCCchHHHHH
Confidence 456677899987554 69999999754
No 269
>KOG2373 consensus Predicted mitochondrial DNA helicase twinkle [Replication, recombination and repair]
Probab=28.28 E-value=46 Score=38.88 Aligned_cols=29 Identities=34% Similarity=0.657 Sum_probs=21.6
Q ss_pred HHHHHHhcCCc---eeEEeecccCCCCceeecC
Q 001820 459 PLIRSVLDGYN---VCIFAYGQTGSGKTYTMTG 488 (1009)
Q Consensus 459 pLV~svLdG~N---~~IfAYGqTGSGKTyTM~G 488 (1009)
|.+...|.|.- .|||+ |+||||||.-|.-
T Consensus 261 pvLNk~LkGhR~GElTvlT-GpTGsGKTTFlsE 292 (514)
T KOG2373|consen 261 PVLNKYLKGHRPGELTVLT-GPTGSGKTTFLSE 292 (514)
T ss_pred hHHHHHhccCCCCceEEEe-cCCCCCceeEehH
Confidence 56677777754 46665 9999999998843
No 270
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=28.28 E-value=38 Score=38.65 Aligned_cols=24 Identities=25% Similarity=0.261 Sum_probs=20.3
Q ss_pred HhcCCceeEEeecccCCCCceeec
Q 001820 464 VLDGYNVCIFAYGQTGSGKTYTMT 487 (1009)
Q Consensus 464 vLdG~N~~IfAYGqTGSGKTyTM~ 487 (1009)
--...+..++-||+.|||||.||.
T Consensus 18 ~~~~~~~r~vL~G~~GsGKS~~L~ 41 (309)
T PF10236_consen 18 DKSSKNNRYVLTGERGSGKSVLLA 41 (309)
T ss_pred cccCCceEEEEECCCCCCHHHHHH
Confidence 345677889999999999999994
No 271
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=28.14 E-value=24 Score=36.15 Aligned_cols=15 Identities=40% Similarity=0.680 Sum_probs=13.0
Q ss_pred EEeecccCCCCceee
Q 001820 472 IFAYGQTGSGKTYTM 486 (1009)
Q Consensus 472 IfAYGqTGSGKTyTM 486 (1009)
|+.+|..|||||+.-
T Consensus 2 i~i~G~pGsGKst~a 16 (183)
T TIGR01359 2 VFVLGGPGSGKGTQC 16 (183)
T ss_pred EEEECCCCCCHHHHH
Confidence 788999999998763
No 272
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=28.12 E-value=2.4e+02 Score=38.16 Aligned_cols=27 Identities=33% Similarity=0.669 Sum_probs=21.8
Q ss_pred HHHHHHHhcCCceeEEeecccCCCCceee
Q 001820 458 QPLIRSVLDGYNVCIFAYGQTGSGKTYTM 486 (1009)
Q Consensus 458 ~pLV~svLdG~N~~IfAYGqTGSGKTyTM 486 (1009)
..+|..++.|.++.+ .-+||+|||.+-
T Consensus 466 ~eaI~aiL~GrDVLV--imPTGSGKSLcY 492 (1195)
T PLN03137 466 REIINATMSGYDVFV--LMPTGGGKSLTY 492 (1195)
T ss_pred HHHHHHHHcCCCEEE--EcCCCccHHHHH
Confidence 467889999999655 459999999874
No 273
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=28.10 E-value=32 Score=42.86 Aligned_cols=41 Identities=29% Similarity=0.455 Sum_probs=26.9
Q ss_pred EeceeeCCCCChHhHHhhhHHHHHHHhcC-CceeEEeecccCCCCceee
Q 001820 439 SFNKVYGPSATQAEVFSDMQPLIRSVLDG-YNVCIFAYGQTGSGKTYTM 486 (1009)
Q Consensus 439 ~FD~VF~~~atQeeVF~~v~pLV~svLdG-~N~~IfAYGqTGSGKTyTM 486 (1009)
+||.|.+ |+.|.+.+...+. .| ..-+++-||+.|+|||.+.
T Consensus 11 ~f~eivG----q~~i~~~L~~~i~---~~r~~ha~Lf~Gp~G~GKTt~A 52 (584)
T PRK14952 11 TFAEVVG----QEHVTEPLSSALD---AGRINHAYLFSGPRGCGKTSSA 52 (584)
T ss_pred cHHHhcC----cHHHHHHHHHHHH---cCCCCeEEEEECCCCCCHHHHH
Confidence 4666664 5666655444433 34 3445788999999999876
No 274
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=28.01 E-value=21 Score=40.11 Aligned_cols=30 Identities=37% Similarity=0.655 Sum_probs=21.1
Q ss_pred CCCceeeEEEecCCCCCcHHHHHHHHHHHHHhhccccC
Q 001820 685 GGQAKTLMFVHISPEPDAVGETISTLKFAERVATVELG 722 (1009)
Q Consensus 685 GGnskT~mI~~ISP~~~~~~ETlsTLrFA~Rak~I~~~ 722 (1009)
..-.+|+++++ .+.+|. |+.|+|+.-..-|
T Consensus 183 ~~l~kTivfVT-----HDidEA---~kLadri~vm~~G 212 (309)
T COG1125 183 KELGKTIVFVT-----HDIDEA---LKLADRIAVMDAG 212 (309)
T ss_pred HHhCCEEEEEe-----cCHHHH---HhhhceEEEecCC
Confidence 34568998887 366664 6899998766544
No 275
>cd01126 TraG_VirD4 The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion. These proteins aid the transfer of DNA from the plasmid into the host bacterial chromosome. They contain an ATP binding domain. VirD4 is involved in DNA transfer to plant cells and is required for virulence.
Probab=27.46 E-value=40 Score=39.24 Aligned_cols=18 Identities=28% Similarity=0.473 Sum_probs=14.9
Q ss_pred EEeecccCCCCceeecCC
Q 001820 472 IFAYGQTGSGKTYTMTGP 489 (1009)
Q Consensus 472 IfAYGqTGSGKTyTM~G~ 489 (1009)
++.+|.||||||+++.=|
T Consensus 2 ~lv~g~tGsGKt~~~viP 19 (384)
T cd01126 2 VLVFAPTRSGKGVGFVIP 19 (384)
T ss_pred eeEecCCCCCCccEEEcc
Confidence 578999999999987543
No 276
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=27.38 E-value=24 Score=34.95 Aligned_cols=15 Identities=40% Similarity=0.563 Sum_probs=12.6
Q ss_pred EEeecccCCCCceee
Q 001820 472 IFAYGQTGSGKTYTM 486 (1009)
Q Consensus 472 IfAYGqTGSGKTyTM 486 (1009)
|+-.|..|||||+.-
T Consensus 2 i~l~G~~GsGKST~a 16 (150)
T cd02021 2 IVVMGVSGSGKSTVG 16 (150)
T ss_pred EEEEcCCCCCHHHHH
Confidence 677899999998764
No 277
>PRK07261 topology modulation protein; Provisional
Probab=27.34 E-value=25 Score=36.36 Aligned_cols=15 Identities=40% Similarity=0.507 Sum_probs=12.8
Q ss_pred EEeecccCCCCceee
Q 001820 472 IFAYGQTGSGKTYTM 486 (1009)
Q Consensus 472 IfAYGqTGSGKTyTM 486 (1009)
|+-.|.+|||||+-.
T Consensus 3 i~i~G~~GsGKSTla 17 (171)
T PRK07261 3 IAIIGYSGSGKSTLA 17 (171)
T ss_pred EEEEcCCCCCHHHHH
Confidence 677899999998765
No 278
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=27.30 E-value=41 Score=39.80 Aligned_cols=78 Identities=17% Similarity=0.313 Sum_probs=47.8
Q ss_pred eeEEeceeeCCCCChHhHHhhh-HHHHHHHhc--C--CceeEEeecccCCCCceee------cCCC-------CCCcccc
Q 001820 436 KSFSFNKVYGPSATQAEVFSDM-QPLIRSVLD--G--YNVCIFAYGQTGSGKTYTM------TGPR-------ELTEKSQ 497 (1009)
Q Consensus 436 k~F~FD~VF~~~atQeeVF~~v-~pLV~svLd--G--~N~~IfAYGqTGSGKTyTM------~G~~-------~~~~~~~ 497 (1009)
..+.||.+.+.----..+.+.+ ..+....+. | .---+.-||+.|+|||+.. .|-. +......
T Consensus 110 ~~~~f~~~~g~~~~~p~f~dk~~~hi~kn~l~~~~ik~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~sk~v 189 (413)
T PLN00020 110 RTRSFDNLVGGYYIAPAFMDKVAVHIAKNFLALPNIKVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELESENA 189 (413)
T ss_pred hhcchhhhcCccccCHHHHHHHHHHHHhhhhhccCCCCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhcCcC
Confidence 4577777766554444555543 566776663 2 2335778999999999873 2211 1122334
Q ss_pred chhhHHHHHHHHHHHH
Q 001820 498 GVNYRALSDLFLIAEQ 513 (1009)
Q Consensus 498 GIipRal~dLF~~~~~ 513 (1009)
|=-.+.++++|..+..
T Consensus 190 GEsEk~IR~~F~~A~~ 205 (413)
T PLN00020 190 GEPGKLIRQRYREAAD 205 (413)
T ss_pred CcHHHHHHHHHHHHHH
Confidence 5566788888887654
No 279
>cd01379 MYSc_type_III Myosin motor domain, type III myosins. Myosin III has been shown to play a role in the vision process in insects and in hearing in mammals. Myosin III, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the
Probab=26.99 E-value=44 Score=42.16 Aligned_cols=35 Identities=29% Similarity=0.498 Sum_probs=25.9
Q ss_pred hHHhhhHHHHHHHh-cCCceeEEeecccCCCCceee
Q 001820 452 EVFSDMQPLIRSVL-DGYNVCIFAYGQTGSGKTYTM 486 (1009)
Q Consensus 452 eVF~~v~pLV~svL-dG~N~~IfAYGqTGSGKTyTM 486 (1009)
.||.-.......++ .+.|-||+.-|.+|||||.|+
T Consensus 68 HifavA~~Ay~~m~~~~~~QsIiisGESGsGKTet~ 103 (653)
T cd01379 68 HIFAIADAAYQSLVTYNQDQCIVISGESGSGKTESA 103 (653)
T ss_pred cHHHHHHHHHHHHHhcCCCceEEEecCCCCCchHHH
Confidence 36654433344433 589999999999999999987
No 280
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=26.98 E-value=46 Score=43.31 Aligned_cols=37 Identities=27% Similarity=0.380 Sum_probs=24.6
Q ss_pred hHhHHhhhHHHHHHHhcCCc------eeEEeecccCCCCceee
Q 001820 450 QAEVFSDMQPLIRSVLDGYN------VCIFAYGQTGSGKTYTM 486 (1009)
Q Consensus 450 QeeVF~~v~pLV~svLdG~N------~~IfAYGqTGSGKTyTM 486 (1009)
|++.-+.|...|..+..|.+ +.++-+|+||+|||++.
T Consensus 571 Q~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA 613 (852)
T TIGR03345 571 QDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETA 613 (852)
T ss_pred hHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHH
Confidence 44444455445555544543 46888999999999876
No 281
>CHL00176 ftsH cell division protein; Validated
Probab=26.97 E-value=36 Score=42.81 Aligned_cols=46 Identities=15% Similarity=0.338 Sum_probs=28.0
Q ss_pred eEEeceeeCCCCChHhHHhhhHHHHHHHhcC---------CceeEEeecccCCCCceee
Q 001820 437 SFSFNKVYGPSATQAEVFSDMQPLIRSVLDG---------YNVCIFAYGQTGSGKTYTM 486 (1009)
Q Consensus 437 ~F~FD~VF~~~atQeeVF~~v~pLV~svLdG---------~N~~IfAYGqTGSGKTyTM 486 (1009)
.++||.|.+.+... +++..++.-+-+. ..-.|+-||++|+|||+..
T Consensus 179 ~~~f~dv~G~~~~k----~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LA 233 (638)
T CHL00176 179 GITFRDIAGIEEAK----EEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLA 233 (638)
T ss_pred CCCHHhccChHHHH----HHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHH
Confidence 46788777654333 3333333322221 1235899999999999886
No 282
>cd01127 TrwB Bacterial conjugation protein TrwB, ATP binding domain. TrwB is a homohexamer encoded by conjugative plasmids in Gram-negative bacteria. TrwB also has an all alpha domain which has been hypothesized to be responsible for DNA binding. TrwB is a component of Type IV secretion and is responsible for the horizontal transfer of DNA between bacteria.
Probab=26.87 E-value=22 Score=42.04 Aligned_cols=16 Identities=38% Similarity=0.590 Sum_probs=13.9
Q ss_pred eEEeecccCCCCceee
Q 001820 471 CIFAYGQTGSGKTYTM 486 (1009)
Q Consensus 471 ~IfAYGqTGSGKTyTM 486 (1009)
-++.+|.||||||..|
T Consensus 44 h~~i~g~tGsGKt~~i 59 (410)
T cd01127 44 HTMIIGTTGTGKTTQI 59 (410)
T ss_pred cEEEEcCCCCCHHHHH
Confidence 4788999999999876
No 283
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=26.71 E-value=40 Score=38.27 Aligned_cols=35 Identities=23% Similarity=0.337 Sum_probs=23.0
Q ss_pred ChHhHHhhhHHHHHHHhcCC-ceeEEeecccCCCCceee
Q 001820 449 TQAEVFSDMQPLIRSVLDGY-NVCIFAYGQTGSGKTYTM 486 (1009)
Q Consensus 449 tQeeVF~~v~pLV~svLdG~-N~~IfAYGqTGSGKTyTM 486 (1009)
.|+.+.+.+...+ -.|. .-+++-||+.|+|||.+.
T Consensus 18 g~~~~~~~l~~~~---~~~~~~~~~Ll~G~~G~GKt~~a 53 (355)
T TIGR02397 18 GQEHIVQTLKNAI---KNGRIAHAYLFSGPRGTGKTSIA 53 (355)
T ss_pred CcHHHHHHHHHHH---HcCCCCeEEEEECCCCCCHHHHH
Confidence 3555555443333 3453 446889999999999776
No 284
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=26.50 E-value=53 Score=39.05 Aligned_cols=46 Identities=28% Similarity=0.512 Sum_probs=29.8
Q ss_pred eeEEeceeeCCCCChHhHHhhhH--------HH----HHHHhcCCceeEEeecccCCCCceee
Q 001820 436 KSFSFNKVYGPSATQAEVFSDMQ--------PL----IRSVLDGYNVCIFAYGQTGSGKTYTM 486 (1009)
Q Consensus 436 k~F~FD~VF~~~atQeeVF~~v~--------pL----V~svLdG~N~~IfAYGqTGSGKTyTM 486 (1009)
-+.+||..|... .+|.++|. |+ -.-+|+|..++-.| |||+|||-..
T Consensus 217 P~ctFddAFq~~---pevmenIkK~GFqKPtPIqSQaWPI~LQG~DliGVA--QTgtgKtL~~ 274 (629)
T KOG0336|consen 217 PVCTFDDAFQCY---PEVMENIKKTGFQKPTPIQSQAWPILLQGIDLIGVA--QTGTGKTLAF 274 (629)
T ss_pred CcCcHHHHHhhh---HHHHHHHHhccCCCCCcchhcccceeecCcceEEEE--ecCCCcCHHH
Confidence 457899999643 34444431 11 22268999987655 9999999543
No 285
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=26.45 E-value=45 Score=42.23 Aligned_cols=40 Identities=20% Similarity=0.294 Sum_probs=27.3
Q ss_pred CCCCChHhHHhhhHHHHHHHhcCCceeEEeecccCCCCceeec
Q 001820 445 GPSATQAEVFSDMQPLIRSVLDGYNVCIFAYGQTGSGKTYTMT 487 (1009)
Q Consensus 445 ~~~atQeeVF~~v~pLV~svLdG~N~~IfAYGqTGSGKTyTM~ 487 (1009)
.+..-|..+..++ ....-.++..-++..|+||||||.+..
T Consensus 261 ~lt~~Q~~ai~~I---~~d~~~~~~~~~Ll~~~TGSGKT~va~ 300 (681)
T PRK10917 261 ELTGAQKRVVAEI---LADLASPKPMNRLLQGDVGSGKTVVAA 300 (681)
T ss_pred CCCHHHHHHHHHH---HHhhhccCCceEEEECCCCCcHHHHHH
Confidence 4666677776664 223334555678999999999998653
No 286
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=26.44 E-value=3.2e+02 Score=28.23 Aligned_cols=22 Identities=18% Similarity=0.172 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHhhhhHHHhhHH
Q 001820 347 QFMQMKFHEEFSNLGIHIHGLA 368 (1009)
Q Consensus 347 ~~~~~~~~~~~~~l~~~~~~l~ 368 (1009)
........+++..+...+..|.
T Consensus 115 ~~~i~~l~~e~~~l~~kL~~l~ 136 (169)
T PF07106_consen 115 REEIEELEEEIEELEEKLEKLR 136 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344445555555544443
No 287
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=25.98 E-value=31 Score=42.13 Aligned_cols=42 Identities=26% Similarity=0.324 Sum_probs=27.0
Q ss_pred EeceeeCCCCChHhHHhhhHHHHHHHhcCCceeEEeecccCCCCceee
Q 001820 439 SFNKVYGPSATQAEVFSDMQPLIRSVLDGYNVCIFAYGQTGSGKTYTM 486 (1009)
Q Consensus 439 ~FD~VF~~~atQeeVF~~v~pLV~svLdG~N~~IfAYGqTGSGKTyTM 486 (1009)
+||.|. .|+.+.+.+...+.+ ......++-||+.|+|||.+.
T Consensus 12 ~~~dvv----Gq~~v~~~L~~~i~~--~~l~ha~Lf~GppGtGKTTlA 53 (504)
T PRK14963 12 TFDEVV----GQEHVKEVLLAALRQ--GRLGHAYLFSGPRGVGKTTTA 53 (504)
T ss_pred CHHHhc----ChHHHHHHHHHHHHc--CCCCeEEEEECCCCCCHHHHH
Confidence 455554 466666655544443 122345689999999999876
No 288
>cd01386 MYSc_type_XVIII Myosin motor domain, type XVIII myosins. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the
Probab=25.91 E-value=46 Score=42.83 Aligned_cols=35 Identities=29% Similarity=0.454 Sum_probs=26.5
Q ss_pred hHHhhhHHHHHHHh-cCCceeEEeecccCCCCceee
Q 001820 452 EVFSDMQPLIRSVL-DGYNVCIFAYGQTGSGKTYTM 486 (1009)
Q Consensus 452 eVF~~v~pLV~svL-dG~N~~IfAYGqTGSGKTyTM 486 (1009)
-||.-.......++ .|.|-||+.-|.+|||||.|.
T Consensus 68 HifaiA~~Ay~~m~~~~~~QsIiiSGESGAGKTe~t 103 (767)
T cd01386 68 HIYSLAQTAYRALLETRRDQSIIFLGRSGAGKTTSC 103 (767)
T ss_pred CHHHHHHHHHHHHHHcCCCceEEEecCCCCCcHHHH
Confidence 36665444444444 599999999999999999986
No 289
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=25.82 E-value=43 Score=36.03 Aligned_cols=28 Identities=25% Similarity=0.418 Sum_probs=20.7
Q ss_pred HHHHHHhcC---CceeEEeecccCCCCceee
Q 001820 459 PLIRSVLDG---YNVCIFAYGQTGSGKTYTM 486 (1009)
Q Consensus 459 pLV~svLdG---~N~~IfAYGqTGSGKTyTM 486 (1009)
+-++.++.| ...+++.+|.+|||||+-.
T Consensus 12 ~~LD~~l~gG~~~g~~~~i~G~~GsGKt~l~ 42 (234)
T PRK06067 12 EELDRKLGGGIPFPSLILIEGDHGTGKSVLS 42 (234)
T ss_pred HHHHHhhCCCCcCCcEEEEECCCCCChHHHH
Confidence 345667754 2567888899999998765
No 290
>PRK08118 topology modulation protein; Reviewed
Probab=25.73 E-value=28 Score=35.95 Aligned_cols=14 Identities=43% Similarity=0.612 Sum_probs=12.1
Q ss_pred EEeecccCCCCcee
Q 001820 472 IFAYGQTGSGKTYT 485 (1009)
Q Consensus 472 IfAYGqTGSGKTyT 485 (1009)
|+-.|+.|||||+.
T Consensus 4 I~I~G~~GsGKSTl 17 (167)
T PRK08118 4 IILIGSGGSGKSTL 17 (167)
T ss_pred EEEECCCCCCHHHH
Confidence 78899999999953
No 291
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=25.56 E-value=28 Score=35.77 Aligned_cols=15 Identities=40% Similarity=0.583 Sum_probs=12.9
Q ss_pred EEeecccCCCCceee
Q 001820 472 IFAYGQTGSGKTYTM 486 (1009)
Q Consensus 472 IfAYGqTGSGKTyTM 486 (1009)
|+.+|..|||||+..
T Consensus 2 I~i~G~pGsGKst~a 16 (194)
T cd01428 2 ILLLGPPGSGKGTQA 16 (194)
T ss_pred EEEECCCCCCHHHHH
Confidence 788999999998654
No 292
>PRK13767 ATP-dependent helicase; Provisional
Probab=25.45 E-value=36 Score=44.31 Aligned_cols=26 Identities=42% Similarity=0.470 Sum_probs=19.5
Q ss_pred HHHHHHhcCCceeEEeecccCCCCceee
Q 001820 459 PLIRSVLDGYNVCIFAYGQTGSGKTYTM 486 (1009)
Q Consensus 459 pLV~svLdG~N~~IfAYGqTGSGKTyTM 486 (1009)
..+..+++|.|+.| ..+||||||...
T Consensus 39 ~Ai~~il~g~nvli--~APTGSGKTlaa 64 (876)
T PRK13767 39 YAIPLIHEGKNVLI--SSPTGSGKTLAA 64 (876)
T ss_pred HHHHHHHcCCCEEE--ECCCCCcHHHHH
Confidence 34555688998766 459999999864
No 293
>PF07795 DUF1635: Protein of unknown function (DUF1635); InterPro: IPR012862 The members of this family include sequences that are parts of hypothetical proteins expressed by plant species. The region in question is about 170 amino acids long.
Probab=25.40 E-value=2.2e+02 Score=31.20 Aligned_cols=39 Identities=23% Similarity=0.292 Sum_probs=27.6
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHhhhhHHHhhHHHH
Q 001820 332 IQELKHTLHTTKAGIQFMQMKFHEEFSNLGIHIHGLAHA 370 (1009)
Q Consensus 332 ~~~l~~~l~~~k~~~~~~~~~~~~~~~~l~~~~~~l~~~ 370 (1009)
+.|||..|-.+..+++.+.+.-.+++.+-+..+..|.++
T Consensus 3 ~EELRq~Ll~TTlELE~~k~~A~EElRk~eeqi~~L~~L 41 (214)
T PF07795_consen 3 MEELRQKLLYTTLELEATKMEANEELRKREEQIAHLKDL 41 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 568888888888888888777777776666555555443
No 294
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=25.37 E-value=50 Score=34.34 Aligned_cols=20 Identities=25% Similarity=0.481 Sum_probs=16.1
Q ss_pred cCCceeEEeecccCCCCcee
Q 001820 466 DGYNVCIFAYGQTGSGKTYT 485 (1009)
Q Consensus 466 dG~N~~IfAYGqTGSGKTyT 485 (1009)
..++..|+-+|.+||||+..
T Consensus 19 a~~~~pVlI~GE~GtGK~~l 38 (168)
T PF00158_consen 19 ASSDLPVLITGETGTGKELL 38 (168)
T ss_dssp TTSTS-EEEECSTTSSHHHH
T ss_pred hCCCCCEEEEcCCCCcHHHH
Confidence 37789999999999999644
No 295
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=25.19 E-value=29 Score=34.20 Aligned_cols=16 Identities=38% Similarity=0.418 Sum_probs=13.5
Q ss_pred eEEeecccCCCCceee
Q 001820 471 CIFAYGQTGSGKTYTM 486 (1009)
Q Consensus 471 ~IfAYGqTGSGKTyTM 486 (1009)
+|+.+|..|||||+.-
T Consensus 1 ~i~l~G~~GsGKstla 16 (154)
T cd00464 1 NIVLIGMMGAGKTTVG 16 (154)
T ss_pred CEEEEcCCCCCHHHHH
Confidence 4788999999998754
No 296
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=24.93 E-value=2.7e+02 Score=32.51 Aligned_cols=55 Identities=15% Similarity=0.135 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhhHHHhhHHHHHhhhhHHHHH
Q 001820 322 KMIFDQQHEDIQELKHTLHTTKAGIQFMQMKFHEEFSNLGIHIHGLAHAASGYHRVLEE 380 (1009)
Q Consensus 322 ~~~~~~~~~~~~~l~~~l~~~k~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~e 380 (1009)
++.++.++.+.++||+.-++++.+.++| .+..++|+.+++.|....+-+.++.+|
T Consensus 224 eeeme~~~aeq~slkRt~EeL~~G~~kL----~~~~etLEqq~~~L~~niDIL~~k~~e 278 (365)
T KOG2391|consen 224 EEEMERLQAEQESLKRTEEELNIGKQKL----VAMKETLEQQLQSLQKNIDILKSKVRE 278 (365)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHhhHHHH----HHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 4556666667777777666655555544 556677777777777777777766666
No 297
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=24.84 E-value=34 Score=41.85 Aligned_cols=46 Identities=20% Similarity=0.322 Sum_probs=31.2
Q ss_pred eeEEeceeeCCCCChHhHHhhhHHHHHHHhcCCceeEEeecccCCCCceee
Q 001820 436 KSFSFNKVYGPSATQAEVFSDMQPLIRSVLDGYNVCIFAYGQTGSGKTYTM 486 (1009)
Q Consensus 436 k~F~FD~VF~~~atQeeVF~~v~pLV~svLdG~N~~IfAYGqTGSGKTyTM 486 (1009)
..+.||.+++.+..-..+.+.++.+ ...+.-|+-+|.+||||++.-
T Consensus 199 ~~~~f~~~ig~s~~~~~~~~~~~~~-----A~~~~pvlI~GE~GtGK~~lA 244 (520)
T PRK10820 199 DDSAFSQIVAVSPKMRQVVEQARKL-----AMLDAPLLITGDTGTGKDLLA 244 (520)
T ss_pred ccccccceeECCHHHHHHHHHHHHH-----hCCCCCEEEECCCCccHHHHH
Confidence 4578999887655434444443222 335778999999999997765
No 298
>PTZ00110 helicase; Provisional
Probab=24.79 E-value=37 Score=41.71 Aligned_cols=26 Identities=31% Similarity=0.423 Sum_probs=20.0
Q ss_pred HHHHHHhcCCceeEEeecccCCCCceee
Q 001820 459 PLIRSVLDGYNVCIFAYGQTGSGKTYTM 486 (1009)
Q Consensus 459 pLV~svLdG~N~~IfAYGqTGSGKTyTM 486 (1009)
..+..++.|.++ ++.++||||||.+.
T Consensus 159 ~aip~~l~G~dv--I~~ApTGSGKTlay 184 (545)
T PTZ00110 159 QGWPIALSGRDM--IGIAETGSGKTLAF 184 (545)
T ss_pred HHHHHHhcCCCE--EEEeCCCChHHHHH
Confidence 346667899976 45679999999864
No 299
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=24.77 E-value=48 Score=38.44 Aligned_cols=26 Identities=27% Similarity=0.337 Sum_probs=20.8
Q ss_pred HHHHhcCCceeEEeecccCCCCceee
Q 001820 461 IRSVLDGYNVCIFAYGQTGSGKTYTM 486 (1009)
Q Consensus 461 V~svLdG~N~~IfAYGqTGSGKTyTM 486 (1009)
++.+.+|.+..+|..++||||||...
T Consensus 6 ~~~~~~~~~~~~~i~apTGsGKT~~~ 31 (357)
T TIGR03158 6 FEALQSKDADIIFNTAPTGAGKTLAW 31 (357)
T ss_pred HHHHHcCCCCEEEEECCCCCCHHHHH
Confidence 34557788777888899999999874
No 300
>PRK10867 signal recognition particle protein; Provisional
Probab=24.76 E-value=61 Score=38.95 Aligned_cols=19 Identities=37% Similarity=0.469 Sum_probs=16.0
Q ss_pred ceeEEeecccCCCCceeec
Q 001820 469 NVCIFAYGQTGSGKTYTMT 487 (1009)
Q Consensus 469 N~~IfAYGqTGSGKTyTM~ 487 (1009)
...|+..|.+|||||+|..
T Consensus 100 p~vI~~vG~~GsGKTTtaa 118 (433)
T PRK10867 100 PTVIMMVGLQGAGKTTTAG 118 (433)
T ss_pred CEEEEEECCCCCcHHHHHH
Confidence 4578888999999999873
No 301
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=24.58 E-value=53 Score=40.74 Aligned_cols=18 Identities=33% Similarity=0.497 Sum_probs=14.8
Q ss_pred eeEEeecccCCCCceeec
Q 001820 470 VCIFAYGQTGSGKTYTMT 487 (1009)
Q Consensus 470 ~~IfAYGqTGSGKTyTM~ 487 (1009)
....-.|+.|+|||||+.
T Consensus 202 ~l~~I~GPPGTGKT~Tlv 219 (649)
T KOG1803|consen 202 DLLIIHGPPGTGKTRTLV 219 (649)
T ss_pred CceEeeCCCCCCceeeHH
Confidence 445678999999999983
No 302
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=24.54 E-value=26 Score=35.90 Aligned_cols=16 Identities=31% Similarity=0.659 Sum_probs=14.1
Q ss_pred eEEeecccCCCCceee
Q 001820 471 CIFAYGQTGSGKTYTM 486 (1009)
Q Consensus 471 ~IfAYGqTGSGKTyTM 486 (1009)
.|+-.|++|||||.++
T Consensus 3 ~~~i~G~sGsGKttl~ 18 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLL 18 (179)
T ss_pred EEEEECCCCCCHHHHH
Confidence 5778899999999887
No 303
>PRK05580 primosome assembly protein PriA; Validated
Probab=24.45 E-value=43 Score=42.38 Aligned_cols=38 Identities=26% Similarity=0.313 Sum_probs=24.4
Q ss_pred eCCCCChHhHHhhhHHHHHHHhcCCceeEEeecccCCCCceeec
Q 001820 444 YGPSATQAEVFSDMQPLIRSVLDGYNVCIFAYGQTGSGKTYTMT 487 (1009)
Q Consensus 444 F~~~atQeeVF~~v~pLV~svLdG~N~~IfAYGqTGSGKTyTM~ 487 (1009)
+.....|.++++.+. ... ++ ..++.+|+||||||.+..
T Consensus 143 ~~Lt~~Q~~ai~~i~---~~~--~~-~~~Ll~~~TGSGKT~v~l 180 (679)
T PRK05580 143 PTLNPEQAAAVEAIR---AAA--GF-SPFLLDGVTGSGKTEVYL 180 (679)
T ss_pred CCCCHHHHHHHHHHH---hcc--CC-CcEEEECCCCChHHHHHH
Confidence 344556776666542 111 33 448899999999997763
No 304
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=24.24 E-value=31 Score=33.52 Aligned_cols=15 Identities=40% Similarity=0.503 Sum_probs=12.6
Q ss_pred EEeecccCCCCceee
Q 001820 472 IFAYGQTGSGKTYTM 486 (1009)
Q Consensus 472 IfAYGqTGSGKTyTM 486 (1009)
|+-.|++|||||+.-
T Consensus 2 I~i~G~~GsGKst~a 16 (147)
T cd02020 2 IAIDGPAGSGKSTVA 16 (147)
T ss_pred EEEECCCCCCHHHHH
Confidence 677899999998754
No 305
>TIGR02746 TraC-F-type type-IV secretion system protein TraC. The protein family described here is common among the F, P and I-like type IV secretion systems. Gene symbols include TraC (F-type), TrbE/VirB4 (P-type) and TraU (I-type). The protein conyains the Walker A and B motifs and so is a putative nucleotide triphosphatase.
Probab=24.22 E-value=26 Score=44.73 Aligned_cols=18 Identities=39% Similarity=0.647 Sum_probs=15.1
Q ss_pred ceeEEeecccCCCCceee
Q 001820 469 NVCIFAYGQTGSGKTYTM 486 (1009)
Q Consensus 469 N~~IfAYGqTGSGKTyTM 486 (1009)
|.-++..|.||||||++|
T Consensus 430 n~n~~I~G~tGsGKS~~~ 447 (797)
T TIGR02746 430 NYNIAVVGGSGAGKSFFM 447 (797)
T ss_pred ccceEEEcCCCCCHHHHH
Confidence 344677899999999998
No 306
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=24.21 E-value=27 Score=39.31 Aligned_cols=15 Identities=33% Similarity=0.461 Sum_probs=13.2
Q ss_pred EEeecccCCCCceee
Q 001820 472 IFAYGQTGSGKTYTM 486 (1009)
Q Consensus 472 IfAYGqTGSGKTyTM 486 (1009)
|+-+|++|||||+.-
T Consensus 61 vll~G~pGTGKT~lA 75 (284)
T TIGR02880 61 MSFTGNPGTGKTTVA 75 (284)
T ss_pred EEEEcCCCCCHHHHH
Confidence 678999999999875
No 307
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=24.13 E-value=26 Score=35.27 Aligned_cols=14 Identities=36% Similarity=0.548 Sum_probs=11.1
Q ss_pred EEeecccCCCCcee
Q 001820 472 IFAYGQTGSGKTYT 485 (1009)
Q Consensus 472 IfAYGqTGSGKTyT 485 (1009)
|+-.|.+|||||+.
T Consensus 1 i~l~G~~GsGKSTl 14 (163)
T TIGR01313 1 FVLMGVAGSGKSTI 14 (163)
T ss_pred CEEECCCCCCHHHH
Confidence 45679999999854
No 308
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=24.12 E-value=47 Score=38.64 Aligned_cols=41 Identities=22% Similarity=0.366 Sum_probs=25.1
Q ss_pred EeceeeCCCCChHhHHhhhHHHHHHHhcC-CceeEEeecccCCCCceee
Q 001820 439 SFNKVYGPSATQAEVFSDMQPLIRSVLDG-YNVCIFAYGQTGSGKTYTM 486 (1009)
Q Consensus 439 ~FD~VF~~~atQeeVF~~v~pLV~svLdG-~N~~IfAYGqTGSGKTyTM 486 (1009)
+||.|.| |+.+-+.+. ..+-.| ..-+++-||+.|+|||++.
T Consensus 14 ~~~~iiG----q~~~~~~l~---~~~~~~~~~h~~L~~Gp~G~GKTtla 55 (363)
T PRK14961 14 YFRDIIG----QKHIVTAIS---NGLSLGRIHHAWLLSGTRGVGKTTIA 55 (363)
T ss_pred chhhccC----hHHHHHHHH---HHHHcCCCCeEEEEecCCCCCHHHHH
Confidence 4555553 444444433 233334 3456789999999999876
No 309
>cd08539 SAM_PNT-ESE-3-like Sterile alpha motif (SAM)/Pointed domain of ESE-3 like ETS transcriptional regulators. SAM Pointed domain of ESE-3-like (Epithelium-Specific ETS) subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. It can act as a major transactivator by providing a potential docking site for co-activators. The ESE-3 transcriptional activator is involved in regulation of glandular epithelium differentiation through the MAP kinase signaling cascade. It is found to be expressed in glandular epithelium of prostate, pancreas, salivary gland, and trachea. Additionally, ESE-3 is differentially expressed during monocyte-derived dendritic cells development. DNA binding consensus motif for ESE-3 consists of purine-rich GGAA/T core sequence. The expression profiles of these factors are altered in epithelial cancers. Members of this subfamily are potential targets for cancer therapy.
Probab=24.07 E-value=73 Score=29.29 Aligned_cols=41 Identities=20% Similarity=0.284 Sum_probs=30.9
Q ss_pred HhHHHHHHHHHHhhhhhhcCCCCCCCChHHHHHHcccchHHHHHHH
Q 001820 41 SRRYEAAGWLRKMVGVVAARDLPAEPSEEEFRLGLRSGIILCNVIN 86 (1009)
Q Consensus 41 ~r~~ea~~WL~~~lg~~~~~~lp~~~~ee~f~~~LrDGvvLCkL~N 86 (1009)
.-+.++.+||.-+++.. ..+....+|....-||--||.+.-
T Consensus 8 Wtk~~V~~WL~~~~~~~-----~~~~~~i~~~~F~MnG~~LC~ms~ 48 (74)
T cd08539 8 WTKYQVWEWLQHLLDTN-----QLDASCIPFQEFDINGEHLCSMSL 48 (74)
T ss_pred CCHHHHHHHHHHHHHHc-----CCCcccccHHHcCCChHHHHccCH
Confidence 34678999999886642 234556679999999999998754
No 310
>CHL00181 cbbX CbbX; Provisional
Probab=23.99 E-value=30 Score=39.07 Aligned_cols=15 Identities=33% Similarity=0.450 Sum_probs=13.1
Q ss_pred EEeecccCCCCceee
Q 001820 472 IFAYGQTGSGKTYTM 486 (1009)
Q Consensus 472 IfAYGqTGSGKTyTM 486 (1009)
|+-||++|+|||+..
T Consensus 62 ill~G~pGtGKT~lA 76 (287)
T CHL00181 62 MSFTGSPGTGKTTVA 76 (287)
T ss_pred EEEECCCCCCHHHHH
Confidence 566999999999876
No 311
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=23.88 E-value=44 Score=35.63 Aligned_cols=25 Identities=32% Similarity=0.525 Sum_probs=18.8
Q ss_pred HHHHhcC---CceeEEeecccCCCCcee
Q 001820 461 IRSVLDG---YNVCIFAYGQTGSGKTYT 485 (1009)
Q Consensus 461 V~svLdG---~N~~IfAYGqTGSGKTyT 485 (1009)
++.++.| .+..++.+|++|||||.-
T Consensus 8 LD~~l~GGip~gs~~li~G~~GsGKT~l 35 (226)
T PF06745_consen 8 LDELLGGGIPKGSVVLISGPPGSGKTTL 35 (226)
T ss_dssp HHHHTTTSEETTSEEEEEESTTSSHHHH
T ss_pred HHHhhcCCCCCCcEEEEEeCCCCCcHHH
Confidence 4566643 467889999999999754
No 312
>PHA02624 large T antigen; Provisional
Probab=23.80 E-value=53 Score=41.11 Aligned_cols=30 Identities=17% Similarity=0.261 Sum_probs=23.1
Q ss_pred hHHHHHHHhcCCce--eEEeecccCCCCceee
Q 001820 457 MQPLIRSVLDGYNV--CIFAYGQTGSGKTYTM 486 (1009)
Q Consensus 457 v~pLV~svLdG~N~--~IfAYGqTGSGKTyTM 486 (1009)
+..++..++.|..- ||+-||+.|||||+-.
T Consensus 417 ~~~~lk~~l~giPKk~~il~~GPpnTGKTtf~ 448 (647)
T PHA02624 417 IYDILKLIVENVPKRRYWLFKGPVNSGKTTLA 448 (647)
T ss_pred HHHHHHHHHhcCCCCeEEEEECCCCCCHHHHH
Confidence 34456666777655 9999999999998765
No 313
>COG0630 VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=23.71 E-value=26 Score=40.12 Aligned_cols=18 Identities=39% Similarity=0.469 Sum_probs=15.2
Q ss_pred eeEEeecccCCCCceeec
Q 001820 470 VCIFAYGQTGSGKTYTMT 487 (1009)
Q Consensus 470 ~~IfAYGqTGSGKTyTM~ 487 (1009)
-+|+-.|.||||||++|.
T Consensus 144 ~siii~G~t~sGKTt~ln 161 (312)
T COG0630 144 KSIIICGGTASGKTTLLN 161 (312)
T ss_pred CcEEEECCCCCCHHHHHH
Confidence 456778999999999984
No 314
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=23.71 E-value=5e+02 Score=22.84 Aligned_cols=26 Identities=19% Similarity=0.385 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHH
Q 001820 325 FDQQHEDIQELKHTLHTTKAGIQFMQ 350 (1009)
Q Consensus 325 ~~~~~~~~~~l~~~l~~~k~~~~~~~ 350 (1009)
++++..++++|...+..+..++..++
T Consensus 5 id~Ls~dVq~L~~kvdqLs~dv~~lr 30 (56)
T PF04728_consen 5 IDQLSSDVQTLNSKVDQLSSDVNALR 30 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555555444
No 315
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=23.71 E-value=43 Score=39.56 Aligned_cols=26 Identities=42% Similarity=0.479 Sum_probs=20.7
Q ss_pred HHHHHHhcCCceeEEeecccCCCCceee
Q 001820 459 PLIRSVLDGYNVCIFAYGQTGSGKTYTM 486 (1009)
Q Consensus 459 pLV~svLdG~N~~IfAYGqTGSGKTyTM 486 (1009)
..|..++.|.++...| |||||||-+.
T Consensus 90 ~aiP~~L~g~dvIglA--eTGSGKT~af 115 (476)
T KOG0330|consen 90 EAIPVALGGRDVIGLA--ETGSGKTGAF 115 (476)
T ss_pred hhcchhhCCCcEEEEe--ccCCCchhhh
Confidence 4567789999986555 9999999776
No 316
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=23.68 E-value=4.7e+02 Score=30.14 Aligned_cols=31 Identities=19% Similarity=0.336 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 001820 317 QSLKQKMIFDQQHEDIQELKHTLHTTKAGIQ 347 (1009)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~l~~~l~~~k~~~~ 347 (1009)
.+..++..+...++++.+|+..+...+..++
T Consensus 217 eL~~~~~~i~~~k~~l~el~~el~~l~~~i~ 247 (325)
T PF08317_consen 217 ELAEQKEEIEAKKKELAELQEELEELEEKIE 247 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444333
No 317
>KOG3000 consensus Microtubule-binding protein involved in cell cycle control [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=23.62 E-value=2.2e+02 Score=32.71 Aligned_cols=103 Identities=16% Similarity=0.292 Sum_probs=72.7
Q ss_pred hHHHHHHHHHHhhhhhhcCCCCCCCChHHHHHHcccchHHHHHHHhhcCCCc--CceecCCCccccCCccccchhhHHHH
Q 001820 42 RRYEAAGWLRKMVGVVAARDLPAEPSEEEFRLGLRSGIILCNVINKVQPGAV--PKVVESPDTVLVPDGAALSAYQYFEN 119 (1009)
Q Consensus 42 r~~ea~~WL~~~lg~~~~~~lp~~~~ee~f~~~LrDGvvLCkL~N~l~PGsV--~Ki~~~~~~~~~~~g~~~~~f~~~EN 119 (1009)
-+.|+..|+.+++...+. -.+-|..|..-|.++..+.||.| +||.-.. ...+.+.-|
T Consensus 16 sR~E~laW~N~~l~~n~~-----------kIEe~~tGaaycqlmd~l~p~~i~lkkVkf~A----------~~Ehe~i~N 74 (295)
T KOG3000|consen 16 SRLEILAWINDLLQLNLT-----------KIEELCTGAAYCQLMDMLFPPDIPLKKVKFAA----------RLEHEYIPN 74 (295)
T ss_pred chHHHHHHHHhhhhcchh-----------hhhhhcccchhhhhhhhccCCccccccccccc----------cccchhhhh
Confidence 356889999999764321 34567789999999999999988 4554332 247778888
Q ss_pred HHHHHHHHHhcCCCC-ccCCchhcCCChhHHHHHHHHHHhcccccccC
Q 001820 120 VRNFLVAVQEMGLPT-FEASDLEQGGKSARVVNCVLALKSYGEWKQTG 166 (1009)
Q Consensus 120 I~~FL~ac~~lGvp~-Fet~DL~egkn~~kVv~cL~aL~~~~e~k~~g 166 (1009)
-..+-.+-..+|+.. -...+|..|+ +.--+.-+.-++.|.....+|
T Consensus 75 fk~lQ~~f~klgi~k~v~vdkLvKg~-~qDNlEF~qWfkkffd~~~~g 121 (295)
T KOG3000|consen 75 FKVLQTCFNKLGIDKVVDVDKLVKGP-FQDNLEFLQWFKKFFDANYGG 121 (295)
T ss_pred hHHHHHHHHhcCCcccccHHHHhccc-ccchHHHHHHHHHHhhccCCc
Confidence 888887779999986 7777777764 222344455666666555444
No 318
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=23.34 E-value=49 Score=42.38 Aligned_cols=26 Identities=23% Similarity=0.258 Sum_probs=20.7
Q ss_pred HHHHHHhcCCceeEEeecccCCCCceee
Q 001820 459 PLIRSVLDGYNVCIFAYGQTGSGKTYTM 486 (1009)
Q Consensus 459 pLV~svLdG~N~~IfAYGqTGSGKTyTM 486 (1009)
..|..+++|.|+.+.| +||||||...
T Consensus 43 ~ai~~il~G~nvvv~a--pTGSGKTla~ 68 (742)
T TIGR03817 43 RAAELAHAGRHVVVAT--GTASGKSLAY 68 (742)
T ss_pred HHHHHHHCCCCEEEEC--CCCCcHHHHH
Confidence 4567788999976655 8999999864
No 319
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=23.13 E-value=30 Score=41.05 Aligned_cols=19 Identities=47% Similarity=0.496 Sum_probs=15.7
Q ss_pred eeEEeecccCCCCceeecC
Q 001820 470 VCIFAYGQTGSGKTYTMTG 488 (1009)
Q Consensus 470 ~~IfAYGqTGSGKTyTM~G 488 (1009)
-.|+-.|++|+|||+|+..
T Consensus 207 ~ii~lvGptGvGKTTt~ak 225 (407)
T PRK12726 207 RIISLIGQTGVGKTTTLVK 225 (407)
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 3577889999999999843
No 320
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=23.13 E-value=63 Score=35.36 Aligned_cols=30 Identities=27% Similarity=0.252 Sum_probs=23.5
Q ss_pred hHHHHHHHhc--CCceeEEeecccCCCCceee
Q 001820 457 MQPLIRSVLD--GYNVCIFAYGQTGSGKTYTM 486 (1009)
Q Consensus 457 v~pLV~svLd--G~N~~IfAYGqTGSGKTyTM 486 (1009)
+..+++.+.+ .-...|.-||..|.|||...
T Consensus 5 ~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA 36 (287)
T PF00931_consen 5 IEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLA 36 (287)
T ss_dssp HHHHHHHHHTTTTSSEEEEEEESTTSSHHHHH
T ss_pred HHHHHHHhhCCCCCeEEEEEEcCCcCCcceee
Confidence 4556666666 66778999999999998765
No 321
>PF12004 DUF3498: Domain of unknown function (DUF3498); InterPro: IPR021887 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 433 to 538 amino acids in length. This domain is found associated with PF00616 from PFAM, PF00168 from PFAM. This domain has two conserved sequence motifs: DLQ and PLSFQNP. ; PDB: 3BXJ_B.
Probab=23.06 E-value=28 Score=42.39 Aligned_cols=28 Identities=36% Similarity=0.512 Sum_probs=0.0
Q ss_pred ChhHHHH--HHHHHHHHHHHHHHHhhhhhh
Q 001820 242 EIPTVVE--SVLSKLVEEFEHRIASQYEQM 269 (1009)
Q Consensus 242 ~~~~~~~--~~l~~~~~~~~~~~~~~~~~~ 269 (1009)
||-.+=| .+..+-++|+|+||..|-+++
T Consensus 377 EI~~LkErL~~S~rkLeEyErrLl~QEqqt 406 (495)
T PF12004_consen 377 EIQSLKERLRMSHRKLEEYERRLLSQEQQT 406 (495)
T ss_dssp ------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 4444434 345677889999998887654
No 322
>PRK01172 ski2-like helicase; Provisional
Probab=23.04 E-value=49 Score=41.58 Aligned_cols=24 Identities=29% Similarity=0.360 Sum_probs=17.8
Q ss_pred HHHHHhcCCceeEEeecccCCCCcee
Q 001820 460 LIRSVLDGYNVCIFAYGQTGSGKTYT 485 (1009)
Q Consensus 460 LV~svLdG~N~~IfAYGqTGSGKTyT 485 (1009)
.+..+++|.| ++..++||||||..
T Consensus 30 ai~~l~~~~n--vlv~apTGSGKTl~ 53 (674)
T PRK01172 30 AIEQLRKGEN--VIVSVPTAAGKTLI 53 (674)
T ss_pred HHHHHhcCCc--EEEECCCCchHHHH
Confidence 3444577877 46678999999975
No 323
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=22.94 E-value=4.1e+02 Score=34.50 Aligned_cols=23 Identities=17% Similarity=0.056 Sum_probs=13.3
Q ss_pred hhcCCChhHHHHHHHHHHhcccc
Q 001820 140 LEQGGKSARVVNCVLALKSYGEW 162 (1009)
Q Consensus 140 L~egkn~~kVv~cL~aL~~~~e~ 162 (1009)
|.+.-+.---++|+.|+..|+..
T Consensus 260 l~~~~~~l~~lD~l~a~a~~a~~ 282 (771)
T TIGR01069 260 LKFLFKEFDFLDSLQARARYAKA 282 (771)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344456778877777654
No 324
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=22.89 E-value=31 Score=30.35 Aligned_cols=16 Identities=38% Similarity=0.499 Sum_probs=12.8
Q ss_pred EEeecccCCCCceeec
Q 001820 472 IFAYGQTGSGKTYTMT 487 (1009)
Q Consensus 472 IfAYGqTGSGKTyTM~ 487 (1009)
++.+|..|+|||++..
T Consensus 2 ~~~~g~~G~Gktt~~~ 17 (99)
T cd01983 2 IVVTGKGGVGKTTLAA 17 (99)
T ss_pred EEEECCCCCCHHHHHH
Confidence 5667888999998874
No 325
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=22.71 E-value=6.4e+02 Score=30.49 Aligned_cols=25 Identities=8% Similarity=0.122 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHH
Q 001820 323 MIFDQQHEDIQELKHTLHTTKAGIQ 347 (1009)
Q Consensus 323 ~~~~~~~~~~~~l~~~l~~~k~~~~ 347 (1009)
.....++.+|.+++..+..+.+++.
T Consensus 59 ~~~~kL~~~lk~~e~~i~~~~~ql~ 83 (420)
T COG4942 59 DQRAKLEKQLKSLETEIASLEAQLI 83 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444333
No 326
>PRK08233 hypothetical protein; Provisional
Probab=22.66 E-value=33 Score=34.77 Aligned_cols=16 Identities=31% Similarity=0.287 Sum_probs=12.6
Q ss_pred eEEeecccCCCCceee
Q 001820 471 CIFAYGQTGSGKTYTM 486 (1009)
Q Consensus 471 ~IfAYGqTGSGKTyTM 486 (1009)
.|+--|++|||||+..
T Consensus 5 iI~I~G~~GsGKtTla 20 (182)
T PRK08233 5 IITIAAVSGGGKTTLT 20 (182)
T ss_pred EEEEECCCCCCHHHHH
Confidence 3555799999999865
No 327
>PHA01747 putative ATP-dependent protease
Probab=22.65 E-value=46 Score=39.25 Aligned_cols=31 Identities=32% Similarity=0.464 Sum_probs=26.9
Q ss_pred hHHHHHHHhcCCceeEEeecccCCCCceeec
Q 001820 457 MQPLIRSVLDGYNVCIFAYGQTGSGKTYTMT 487 (1009)
Q Consensus 457 v~pLV~svLdG~N~~IfAYGqTGSGKTyTM~ 487 (1009)
+-|+|++-..+-|.-++=.|+.||||||+..
T Consensus 178 LiPlVE~~~~~~NyNliELgPRGTGKS~~f~ 208 (425)
T PHA01747 178 LLPLFTSPVSKRPVHIIELSNRGTGKTTTFV 208 (425)
T ss_pred hhhheeccCCCCCeeEEEecCCCCChhhHHH
Confidence 4688887778889999999999999999873
No 328
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=22.60 E-value=65 Score=38.70 Aligned_cols=20 Identities=45% Similarity=0.449 Sum_probs=16.9
Q ss_pred CceeEEeecccCCCCceeec
Q 001820 468 YNVCIFAYGQTGSGKTYTMT 487 (1009)
Q Consensus 468 ~N~~IfAYGqTGSGKTyTM~ 487 (1009)
....|+-.|.+|+|||+|..
T Consensus 99 ~~~vi~lvG~~GvGKTTtaa 118 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCT 118 (429)
T ss_pred CCeEEEEECCCCCCHHHHHH
Confidence 34678999999999999983
No 329
>PRK06217 hypothetical protein; Validated
Probab=22.54 E-value=34 Score=35.53 Aligned_cols=15 Identities=40% Similarity=0.454 Sum_probs=12.6
Q ss_pred EEeecccCCCCceee
Q 001820 472 IFAYGQTGSGKTYTM 486 (1009)
Q Consensus 472 IfAYGqTGSGKTyTM 486 (1009)
|+-.|.+|||||+.-
T Consensus 4 I~i~G~~GsGKSTla 18 (183)
T PRK06217 4 IHITGASGSGTTTLG 18 (183)
T ss_pred EEEECCCCCCHHHHH
Confidence 788899999998653
No 330
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=22.48 E-value=31 Score=41.26 Aligned_cols=17 Identities=41% Similarity=0.366 Sum_probs=15.2
Q ss_pred eeEEeecccCCCCceee
Q 001820 470 VCIFAYGQTGSGKTYTM 486 (1009)
Q Consensus 470 ~~IfAYGqTGSGKTyTM 486 (1009)
..|...|++|+|||+|+
T Consensus 192 ~vi~lvGpnG~GKTTtl 208 (420)
T PRK14721 192 GVYALIGPTGVGKTTTT 208 (420)
T ss_pred cEEEEECCCCCCHHHHH
Confidence 46778899999999999
No 331
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=22.43 E-value=60 Score=34.61 Aligned_cols=29 Identities=31% Similarity=0.460 Sum_probs=21.4
Q ss_pred HHHHHHhcCC---ceeEEeecccCCCCceeec
Q 001820 459 PLIRSVLDGY---NVCIFAYGQTGSGKTYTMT 487 (1009)
Q Consensus 459 pLV~svLdG~---N~~IfAYGqTGSGKTyTM~ 487 (1009)
+-++.+|.|- ...+.-||.+|||||....
T Consensus 10 ~~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~ 41 (225)
T PRK09361 10 KMLDELLGGGFERGTITQIYGPPGSGKTNICL 41 (225)
T ss_pred HHHHHHhcCCCCCCeEEEEECCCCCCHHHHHH
Confidence 4467777542 4567899999999988763
No 332
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=22.43 E-value=57 Score=42.40 Aligned_cols=37 Identities=30% Similarity=0.311 Sum_probs=25.1
Q ss_pred hHhHHhhhHHHHHHHhcCC------ceeEEeecccCCCCceee
Q 001820 450 QAEVFSDMQPLIRSVLDGY------NVCIFAYGQTGSGKTYTM 486 (1009)
Q Consensus 450 QeeVF~~v~pLV~svLdG~------N~~IfAYGqTGSGKTyTM 486 (1009)
|...-+.+...|..+..|. .+.++-+|++|+|||++.
T Consensus 570 Q~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA 612 (852)
T TIGR03346 570 QDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELA 612 (852)
T ss_pred ChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHH
Confidence 4555555555555555553 356778899999999876
No 333
>TIGR03744 traC_PFL_4706 conjugative transfer ATPase, PFL_4706 family. Members of this protein family are predicted ATP-binding proteins apparently associated with DNA conjugal transfer. Members are found both in plasmids and in bacterial chromosomal regions that appear to derive from integrative elements such as conjugative transposons. More distant homologs, outside the scope of this family, include type IV secretion/conjugal transfer proteins such as TraC, VirB4 and TrsE. The granularity of this protein family definition is chosen so as to represent one distinctive clade and act as a marker through which to define and recognize the class of mobile element it serves.
Probab=22.41 E-value=29 Score=45.28 Aligned_cols=19 Identities=37% Similarity=0.623 Sum_probs=16.6
Q ss_pred CceeEEeecccCCCCceee
Q 001820 468 YNVCIFAYGQTGSGKTYTM 486 (1009)
Q Consensus 468 ~N~~IfAYGqTGSGKTyTM 486 (1009)
.|.-.+..|+||||||++|
T Consensus 474 ~n~n~~I~G~TGSGKS~l~ 492 (893)
T TIGR03744 474 KNAHLLILGPTGAGKSATL 492 (893)
T ss_pred CcccEEEECCCCCCHHHHH
Confidence 4677788899999999998
No 334
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=22.40 E-value=59 Score=40.59 Aligned_cols=40 Identities=25% Similarity=0.562 Sum_probs=24.1
Q ss_pred eceeeCCCCChHhHHhhhHHHHHHH---hcCCceeEEeecccCCCCc
Q 001820 440 FNKVYGPSATQAEVFSDMQPLIRSV---LDGYNVCIFAYGQTGSGKT 483 (1009)
Q Consensus 440 FD~VF~~~atQeeVF~~v~pLV~sv---LdG~N~~IfAYGqTGSGKT 483 (1009)
|+.+||. +++-+.+-..+.++ +....-.++-.|++|+|||
T Consensus 75 F~d~yGl----ee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKS 117 (644)
T PRK15455 75 FEEFYGM----EEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKS 117 (644)
T ss_pred hhcccCc----HHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCch
Confidence 5566764 44444432222222 2445567888999999999
No 335
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=22.33 E-value=52 Score=34.85 Aligned_cols=29 Identities=28% Similarity=0.367 Sum_probs=21.2
Q ss_pred HHHHHHhc-CC--ceeEEeecccCCCCceeec
Q 001820 459 PLIRSVLD-GY--NVCIFAYGQTGSGKTYTMT 487 (1009)
Q Consensus 459 pLV~svLd-G~--N~~IfAYGqTGSGKTyTM~ 487 (1009)
+-++.+|. |+ ...+.-+|++|+|||..+.
T Consensus 6 ~~lD~~l~GG~~~g~v~~I~G~~GsGKT~l~~ 37 (226)
T cd01393 6 KALDELLGGGIPTGRITEIFGEFGSGKTQLCL 37 (226)
T ss_pred HHHHHHhCCCCcCCcEEEEeCCCCCChhHHHH
Confidence 45677775 43 4467789999999998763
No 336
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=22.26 E-value=39 Score=37.44 Aligned_cols=40 Identities=25% Similarity=0.336 Sum_probs=25.3
Q ss_pred CCCCChHhHHhhhHHHHHHHhcCCceeEEeecccCCCCceee
Q 001820 445 GPSATQAEVFSDMQPLIRSVLDGYNVCIFAYGQTGSGKTYTM 486 (1009)
Q Consensus 445 ~~~atQeeVF~~v~pLV~svLdG~N~~IfAYGqTGSGKTyTM 486 (1009)
.++++|....+....+-+. .-....|+..|.||+|||.++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~--~~~~~~IllvG~tGvGKSSli 48 (249)
T cd01853 9 FPDAAQTKALELEAKGKEE--LDFSLTILVLGKTGVGKSSTI 48 (249)
T ss_pred CcHHHHHHHHHHHHHhhhh--ccCCeEEEEECCCCCcHHHHH
Confidence 3455665555443333332 244567888999999999886
No 337
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=22.26 E-value=53 Score=34.75 Aligned_cols=27 Identities=30% Similarity=0.489 Sum_probs=20.1
Q ss_pred HHHHHhc-CCc--eeEEeecccCCCCceee
Q 001820 460 LIRSVLD-GYN--VCIFAYGQTGSGKTYTM 486 (1009)
Q Consensus 460 LV~svLd-G~N--~~IfAYGqTGSGKTyTM 486 (1009)
-++.++. |+. ..+..+|.+|||||...
T Consensus 7 ~LD~~l~GGi~~g~i~~i~G~~GsGKT~l~ 36 (218)
T cd01394 7 GLDELLGGGVERGTVTQVYGPPGTGKTNIA 36 (218)
T ss_pred HHHHHhcCCccCCeEEEEECCCCCCHHHHH
Confidence 3567775 443 34789999999999876
No 338
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=22.23 E-value=50 Score=37.26 Aligned_cols=38 Identities=26% Similarity=0.303 Sum_probs=24.3
Q ss_pred CCCChHhHHhhhHHHHHHHhcCCceeEEeecccCCCCceeecC
Q 001820 446 PSATQAEVFSDMQPLIRSVLDGYNVCIFAYGQTGSGKTYTMTG 488 (1009)
Q Consensus 446 ~~atQeeVF~~v~pLV~svLdG~N~~IfAYGqTGSGKTyTM~G 488 (1009)
+-..|.++-+.| .+.+.+|.+ ++.=.+||+|||.+.+-
T Consensus 9 ~r~~Q~~~m~~v---~~~~~~~~~--~~~eapTGtGKTl~~L~ 46 (289)
T smart00488 9 PYPIQYEFMEEL---KRVLDRGKI--GILESPTGTGKTLSLLC 46 (289)
T ss_pred CCHHHHHHHHHH---HHHHHcCCc--EEEECCCCcchhHHHHH
Confidence 445566655554 334446754 45667999999988753
No 339
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=22.23 E-value=50 Score=37.26 Aligned_cols=38 Identities=26% Similarity=0.303 Sum_probs=24.3
Q ss_pred CCCChHhHHhhhHHHHHHHhcCCceeEEeecccCCCCceeecC
Q 001820 446 PSATQAEVFSDMQPLIRSVLDGYNVCIFAYGQTGSGKTYTMTG 488 (1009)
Q Consensus 446 ~~atQeeVF~~v~pLV~svLdG~N~~IfAYGqTGSGKTyTM~G 488 (1009)
+-..|.++-+.| .+.+.+|.+ ++.=.+||+|||.+.+-
T Consensus 9 ~r~~Q~~~m~~v---~~~~~~~~~--~~~eapTGtGKTl~~L~ 46 (289)
T smart00489 9 PYPIQYEFMEEL---KRVLDRGKI--GILESPTGTGKTLSLLC 46 (289)
T ss_pred CCHHHHHHHHHH---HHHHHcCCc--EEEECCCCcchhHHHHH
Confidence 445566655554 334446754 45667999999988753
No 340
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=22.20 E-value=31 Score=43.59 Aligned_cols=50 Identities=32% Similarity=0.416 Sum_probs=32.5
Q ss_pred CCceeEEeecccCCCCceeecCC-------------CCCCccccchhhHHHHHHHHHHHHhcc
Q 001820 467 GYNVCIFAYGQTGSGKTYTMTGP-------------RELTEKSQGVNYRALSDLFLIAEQRKD 516 (1009)
Q Consensus 467 G~N~~IfAYGqTGSGKTyTM~G~-------------~~~~~~~~GIipRal~dLF~~~~~~~~ 516 (1009)
-...-|+-||+.|+||||...-- ++.-..--|---..+++||..++..+.
T Consensus 699 r~~~giLLyGppGcGKT~la~a~a~~~~~~fisvKGPElL~KyIGaSEq~vR~lF~rA~~a~P 761 (952)
T KOG0735|consen 699 RLRTGILLYGPPGCGKTLLASAIASNSNLRFISVKGPELLSKYIGASEQNVRDLFERAQSAKP 761 (952)
T ss_pred ccccceEEECCCCCcHHHHHHHHHhhCCeeEEEecCHHHHHHHhcccHHHHHHHHHHhhccCC
Confidence 34556999999999999975321 011112235556778999988876554
No 341
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=22.16 E-value=46 Score=41.74 Aligned_cols=41 Identities=24% Similarity=0.360 Sum_probs=26.8
Q ss_pred EeceeeCCCCChHhHHhhhHHHHHHHhcCC-ceeEEeecccCCCCceee
Q 001820 439 SFNKVYGPSATQAEVFSDMQPLIRSVLDGY-NVCIFAYGQTGSGKTYTM 486 (1009)
Q Consensus 439 ~FD~VF~~~atQeeVF~~v~pLV~svLdG~-N~~IfAYGqTGSGKTyTM 486 (1009)
+||.|.| |+.+...+..++. .|. .-.++-||+.|+|||++.
T Consensus 14 ~f~dviG----Qe~vv~~L~~~l~---~~rl~ha~Lf~Gp~GvGKTtlA 55 (618)
T PRK14951 14 SFSEMVG----QEHVVQALTNALT---QQRLHHAYLFTGTRGVGKTTVS 55 (618)
T ss_pred CHHHhcC----cHHHHHHHHHHHH---cCCCCeEEEEECCCCCCHHHHH
Confidence 5677765 5665554433332 333 346788999999999876
No 342
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=22.15 E-value=33 Score=33.41 Aligned_cols=16 Identities=31% Similarity=0.455 Sum_probs=13.5
Q ss_pred eEEeecccCCCCceee
Q 001820 471 CIFAYGQTGSGKTYTM 486 (1009)
Q Consensus 471 ~IfAYGqTGSGKTyTM 486 (1009)
.+.-.|++|||||.++
T Consensus 17 ~v~I~GpSGsGKSTLl 32 (107)
T cd00820 17 GVLITGDSGIGKTELA 32 (107)
T ss_pred EEEEEcCCCCCHHHHH
Confidence 4567899999999877
No 343
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=22.13 E-value=46 Score=42.07 Aligned_cols=44 Identities=20% Similarity=0.394 Sum_probs=27.8
Q ss_pred EEeceeeCCCCChHhHHhhhHHHHHHHhcCCceeEEeecccCCCCceee
Q 001820 438 FSFNKVYGPSATQAEVFSDMQPLIRSVLDGYNVCIFAYGQTGSGKTYTM 486 (1009)
Q Consensus 438 F~FD~VF~~~atQeeVF~~v~pLV~svLdG~N~~IfAYGqTGSGKTyTM 486 (1009)
+.|+.+++.+..-..+.+.+ .. +...+..|+-+|.+|||||+.-
T Consensus 373 ~~~~~liG~S~~~~~~~~~~----~~-~a~~~~pVLI~GE~GTGK~~lA 416 (686)
T PRK15429 373 SEFGEIIGRSEAMYSVLKQV----EM-VAQSDSTVLILGETGTGKELIA 416 (686)
T ss_pred ccccceeecCHHHHHHHHHH----HH-HhCCCCCEEEECCCCcCHHHHH
Confidence 34566666544444444433 22 2356778999999999998754
No 344
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=22.09 E-value=50 Score=33.21 Aligned_cols=20 Identities=15% Similarity=0.190 Sum_probs=16.1
Q ss_pred CCceeEEeecccCCCCceee
Q 001820 467 GYNVCIFAYGQTGSGKTYTM 486 (1009)
Q Consensus 467 G~N~~IfAYGqTGSGKTyTM 486 (1009)
+....|...|++|.||+..+
T Consensus 100 ~~~~~v~~~G~~nvGKStli 119 (157)
T cd01858 100 KKQISVGFIGYPNVGKSSII 119 (157)
T ss_pred ccceEEEEEeCCCCChHHHH
Confidence 44567777999999998876
No 345
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=22.02 E-value=40 Score=41.48 Aligned_cols=42 Identities=21% Similarity=0.166 Sum_probs=24.4
Q ss_pred EEeecccCCCCceeecCCCC--CCccccchhhHHHHHHHHHHHH
Q 001820 472 IFAYGQTGSGKTYTMTGPRE--LTEKSQGVNYRALSDLFLIAEQ 513 (1009)
Q Consensus 472 IfAYGqTGSGKTyTM~G~~~--~~~~~~GIipRal~dLF~~~~~ 513 (1009)
||..|+|.|||||--.---. ...---|=+-....++|.....
T Consensus 194 i~H~GPTNSGKTy~ALqrl~~aksGvycGPLrLLA~EV~~r~na 237 (700)
T KOG0953|consen 194 IMHVGPTNSGKTYRALQRLKSAKSGVYCGPLRLLAHEVYDRLNA 237 (700)
T ss_pred EEEeCCCCCchhHHHHHHHhhhccceecchHHHHHHHHHHHhhh
Confidence 89999999999997532100 0011123344455667766544
No 346
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=21.94 E-value=39 Score=34.44 Aligned_cols=15 Identities=33% Similarity=0.437 Sum_probs=12.9
Q ss_pred EEeecccCCCCceee
Q 001820 472 IFAYGQTGSGKTYTM 486 (1009)
Q Consensus 472 IfAYGqTGSGKTyTM 486 (1009)
++-+|.+|+|||...
T Consensus 2 ~li~G~~G~GKT~l~ 16 (187)
T cd01124 2 TLLSGGPGTGKTTFA 16 (187)
T ss_pred EEEEcCCCCCHHHHH
Confidence 678999999999755
No 347
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=21.90 E-value=8.5e+02 Score=30.18 Aligned_cols=54 Identities=20% Similarity=0.294 Sum_probs=34.4
Q ss_pred hHHHHHHHHHHHHHHHhhhhHHHhhHHHHHhhhhHHHHHHhh---hhhhhhccCCCe
Q 001820 342 TKAGIQFMQMKFHEEFSNLGIHIHGLAHAASGYHRVLEENRK---LYNQVQDLKGSI 395 (1009)
Q Consensus 342 ~k~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~e~r~---l~n~~qelkGnI 395 (1009)
++..+...+..+...+..+...+++|..+.......+.++++ |+..+..|+..+
T Consensus 365 i~~~v~~Er~~~~~~l~~~~~~~~~le~~~~~~~~~~~~~~~~~~l~~a~~~l~~~l 421 (582)
T PF09731_consen 365 IKEKVEQERNGRLAKLAELNSRLKALEEALDARSEAEDENRRAQQLWLAVDALKSAL 421 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555566667777888888888888877766666655543 445555555333
No 348
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=21.73 E-value=31 Score=36.18 Aligned_cols=15 Identities=47% Similarity=0.465 Sum_probs=12.7
Q ss_pred EEeecccCCCCceee
Q 001820 472 IFAYGQTGSGKTYTM 486 (1009)
Q Consensus 472 IfAYGqTGSGKTyTM 486 (1009)
|.-.|++|||||++-
T Consensus 2 IgI~G~sgSGKTTla 16 (194)
T PF00485_consen 2 IGIAGPSGSGKTTLA 16 (194)
T ss_dssp EEEEESTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 567899999999875
No 349
>PF10923 DUF2791: P-loop Domain of unknown function (DUF2791); InterPro: IPR021228 This is a family of proteins found in archaea and bacteria. Some of the proteins in this family are annotated as being methyl-accepting chemotaxis proteins and ATP/GTP binding proteins.
Probab=21.66 E-value=67 Score=38.45 Aligned_cols=35 Identities=29% Similarity=0.426 Sum_probs=28.2
Q ss_pred hHHhhhHHHHHHHhcCCceeEEeecccCCCCceee
Q 001820 452 EVFSDMQPLIRSVLDGYNVCIFAYGQTGSGKTYTM 486 (1009)
Q Consensus 452 eVF~~v~pLV~svLdG~N~~IfAYGqTGSGKTyTM 486 (1009)
..-+.+..-++.+-+|....-|..|.-||||||.+
T Consensus 32 ~e~~~l~~~l~~v~~G~s~~kfi~G~YGsGKTf~l 66 (416)
T PF10923_consen 32 REIEALDRDLDRVADGGSSFKFIRGEYGSGKTFFL 66 (416)
T ss_pred HHHHHHHHHHHHHhCCCCeEEEEEeCCCCcHHHHH
Confidence 33344544567788999999999999999999987
No 350
>PF03195 DUF260: Protein of unknown function DUF260; InterPro: IPR004883 The lateral organ boundaries (LOB) gene is expressed at the adaxial base of initiating lateral organs and encodes a plant-specific protein of unknown function. The N-terminal one half of the LOB protein contains a conserved approximately 100-amino acid domain (the LOB domain) that is present in 42 other Arabidopsis thaliana proteins and in proteins from a variety of other plant species. Genes encoding LOB domain (LBD) proteins are expressed in a variety of temporal- and tissue-specific patterns, suggesting that they may function in diverse processes [] The LOB domain contains conserved blocks of amino acids that identify the LBD gene family. In particular, a conserved C-x(2)-C-x(6)-C-x(3)-C motif, which is defining feature of the LOB domain, is present in all LBD proteins. It is possible that this motif forms a new zinc finger [].
Probab=21.54 E-value=1.2e+02 Score=29.31 Aligned_cols=80 Identities=16% Similarity=0.244 Sum_probs=55.6
Q ss_pred CCCCCCchhhHhhhhhcCCCceeeEEEecCCCCCcHHHHHHHHHHHHHhhccccCcccccCChHHHHHHHHHHHHHHHHH
Q 001820 668 HVPYRNSKLTQLLQDSLGGQAKTLMFVHISPEPDAVGETISTLKFAERVATVELGAARVNKDSSDVKELKEQIASLKAAL 747 (1009)
Q Consensus 668 hIPYRdSKLT~LLqdsLGGnskT~mI~~ISP~~~~~~ETlsTLrFA~Rak~I~~~~~~vn~~~~~i~~L~eeI~~Lk~~L 747 (1009)
+.|..+..-+......+|-..-+-|+-.+.|. .-.++.+||-|-..++... .+.--...|..|+.++..++.+|
T Consensus 21 yFP~~~~~~F~~vhkvFG~sni~k~L~~~~~~--~R~~a~~Sl~yEA~~R~~d----Pv~Gc~G~i~~L~~ql~~~~~el 94 (101)
T PF03195_consen 21 YFPADQPQRFANVHKVFGVSNISKMLQELPPE--QREDAMRSLVYEANARARD----PVYGCVGIISQLQQQLQQLQAEL 94 (101)
T ss_pred CCChhHHHHHHHHHHHHchhHHHHHHHhCCcc--chhhHHHHHHHHHHhhccC----CCcchHHHHHHHHHHHHHHHHHH
Confidence 44545555555555666655555566677665 5789999999998877442 23334567899999999999999
Q ss_pred HhhhcC
Q 001820 748 ARKEGE 753 (1009)
Q Consensus 748 ~~~~~e 753 (1009)
...+.+
T Consensus 95 ~~~~~~ 100 (101)
T PF03195_consen 95 ALVRAQ 100 (101)
T ss_pred HHHHcc
Confidence 887654
No 351
>PRK14531 adenylate kinase; Provisional
Probab=21.51 E-value=38 Score=35.18 Aligned_cols=16 Identities=25% Similarity=0.430 Sum_probs=13.4
Q ss_pred eEEeecccCCCCceee
Q 001820 471 CIFAYGQTGSGKTYTM 486 (1009)
Q Consensus 471 ~IfAYGqTGSGKTyTM 486 (1009)
-|+.+|..|||||+.-
T Consensus 4 ~i~i~G~pGsGKsT~~ 19 (183)
T PRK14531 4 RLLFLGPPGAGKGTQA 19 (183)
T ss_pred EEEEECCCCCCHHHHH
Confidence 3788999999998763
No 352
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=21.47 E-value=31 Score=36.07 Aligned_cols=15 Identities=47% Similarity=0.476 Sum_probs=12.7
Q ss_pred EEeecccCCCCceee
Q 001820 472 IFAYGQTGSGKTYTM 486 (1009)
Q Consensus 472 IfAYGqTGSGKTyTM 486 (1009)
|.--|++|||||+++
T Consensus 2 igi~G~~GsGKSTl~ 16 (198)
T cd02023 2 IGIAGGSGSGKTTVA 16 (198)
T ss_pred EEEECCCCCCHHHHH
Confidence 456799999999987
No 353
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=21.36 E-value=46 Score=43.92 Aligned_cols=27 Identities=26% Similarity=0.503 Sum_probs=22.0
Q ss_pred HHHHHHhcCCceeEEeecccCCCCceee
Q 001820 459 PLIRSVLDGYNVCIFAYGQTGSGKTYTM 486 (1009)
Q Consensus 459 pLV~svLdG~N~~IfAYGqTGSGKTyTM 486 (1009)
..|..++.+.+.+| ..|..|+||||+|
T Consensus 353 ~Av~~il~s~~v~v-v~G~AGTGKTT~l 379 (988)
T PRK13889 353 DALAHVTDGRDLGV-VVGYAGTGKSAML 379 (988)
T ss_pred HHHHHHhcCCCeEE-EEeCCCCCHHHHH
Confidence 46777888877654 8899999999987
No 354
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=21.14 E-value=46 Score=37.57 Aligned_cols=45 Identities=31% Similarity=0.522 Sum_probs=29.4
Q ss_pred eEEeecccCCCCceeecCCCC-------------CCccccchhhHHHHHHHHHHHHhc
Q 001820 471 CIFAYGQTGSGKTYTMTGPRE-------------LTEKSQGVNYRALSDLFLIAEQRK 515 (1009)
Q Consensus 471 ~IfAYGqTGSGKTyTM~G~~~-------------~~~~~~GIipRal~dLF~~~~~~~ 515 (1009)
-|+.||+.|+|||..--.-.+ ....--|--.|.+++||.....++
T Consensus 213 gvllygppgtgktl~aravanrtdacfirvigselvqkyvgegarmvrelf~martkk 270 (435)
T KOG0729|consen 213 GVLLYGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFEMARTKK 270 (435)
T ss_pred ceEEeCCCCCchhHHHHHHhcccCceEEeehhHHHHHHHhhhhHHHHHHHHHHhcccc
Confidence 489999999999975432111 111223555788999998876543
No 355
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=21.11 E-value=42 Score=38.38 Aligned_cols=48 Identities=29% Similarity=0.468 Sum_probs=32.5
Q ss_pred eEEeecccCCCCceeecCCC-------------CCCccccchhhHHHHHHHHHHHHhccce
Q 001820 471 CIFAYGQTGSGKTYTMTGPR-------------ELTEKSQGVNYRALSDLFLIAEQRKDIF 518 (1009)
Q Consensus 471 ~IfAYGqTGSGKTyTM~G~~-------------~~~~~~~GIipRal~dLF~~~~~~~~~~ 518 (1009)
-|+-||..|+|||..--.-. +......|=-|+.+++||...+....+.
T Consensus 221 GVIlyG~PGTGKTLLAKAVANqTSATFlRvvGseLiQkylGdGpklvRqlF~vA~e~apSI 281 (440)
T KOG0726|consen 221 GVILYGEPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSI 281 (440)
T ss_pred eeEEeCCCCCchhHHHHHHhcccchhhhhhhhHHHHHHHhccchHHHHHHHHHHHhcCCce
Confidence 47899999999985431110 0112334666899999999998776653
No 356
>PTZ00014 myosin-A; Provisional
Probab=21.10 E-value=72 Score=41.40 Aligned_cols=34 Identities=24% Similarity=0.371 Sum_probs=25.9
Q ss_pred HHhhhHHHHHHHh-cCCceeEEeecccCCCCceee
Q 001820 453 VFSDMQPLIRSVL-DGYNVCIFAYGQTGSGKTYTM 486 (1009)
Q Consensus 453 VF~~v~pLV~svL-dG~N~~IfAYGqTGSGKTyTM 486 (1009)
||.-.......++ .+.|-||+.-|.+|||||.+.
T Consensus 166 ifavA~~Ay~~m~~~~~~QsIiiSGESGAGKTe~t 200 (821)
T PTZ00014 166 VFTTARRALENLHGVKKSQTIIVSGESGAGKTEAT 200 (821)
T ss_pred HHHHHHHHHHHHHhcCCCceEEEEcCCCCCchHHH
Confidence 6665444444444 689999999999999999764
No 357
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=21.06 E-value=49 Score=38.81 Aligned_cols=21 Identities=33% Similarity=0.601 Sum_probs=18.8
Q ss_pred cCCceeEEeecccCCCCceee
Q 001820 466 DGYNVCIFAYGQTGSGKTYTM 486 (1009)
Q Consensus 466 dG~N~~IfAYGqTGSGKTyTM 486 (1009)
.|+.-+|+..|+.|+|||.-+
T Consensus 20 ~Gi~f~im~~G~sG~GKttfi 40 (373)
T COG5019 20 KGIDFTIMVVGESGLGKTTFI 40 (373)
T ss_pred cCCceEEEEecCCCCchhHHH
Confidence 599999999999999998743
No 358
>PRK14532 adenylate kinase; Provisional
Probab=20.72 E-value=43 Score=34.62 Aligned_cols=16 Identities=19% Similarity=0.420 Sum_probs=13.3
Q ss_pred eEEeecccCCCCceee
Q 001820 471 CIFAYGQTGSGKTYTM 486 (1009)
Q Consensus 471 ~IfAYGqTGSGKTyTM 486 (1009)
.|+..|..|||||+.-
T Consensus 2 ~i~~~G~pGsGKsT~a 17 (188)
T PRK14532 2 NLILFGPPAAGKGTQA 17 (188)
T ss_pred EEEEECCCCCCHHHHH
Confidence 4788999999998753
No 359
>CHL00195 ycf46 Ycf46; Provisional
Probab=20.53 E-value=35 Score=41.56 Aligned_cols=17 Identities=29% Similarity=0.479 Sum_probs=14.8
Q ss_pred eeEEeecccCCCCceee
Q 001820 470 VCIFAYGQTGSGKTYTM 486 (1009)
Q Consensus 470 ~~IfAYGqTGSGKTyTM 486 (1009)
-.|+-||+.|+|||++.
T Consensus 260 kGILL~GPpGTGKTllA 276 (489)
T CHL00195 260 RGLLLVGIQGTGKSLTA 276 (489)
T ss_pred ceEEEECCCCCcHHHHH
Confidence 46999999999999765
No 360
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=20.44 E-value=33 Score=32.49 Aligned_cols=15 Identities=27% Similarity=0.448 Sum_probs=13.2
Q ss_pred EEeecccCCCCceee
Q 001820 472 IFAYGQTGSGKTYTM 486 (1009)
Q Consensus 472 IfAYGqTGSGKTyTM 486 (1009)
|..+|.+|||||..+
T Consensus 4 i~~~G~~~~GKstl~ 18 (161)
T TIGR00231 4 IVIVGDPNVGKSTLL 18 (161)
T ss_pred EEEECCCCCCHHHHH
Confidence 677899999999876
No 361
>PF10412 TrwB_AAD_bind: Type IV secretion-system coupling protein DNA-binding domain; InterPro: IPR019476 The plasmid conjugative coupling protein TraD (also known as TrwB) is a basic integral inner-membrane nucleoside-triphosphate-binding protein. It is the structural prototype for the type IV secretion system coupling proteins, a family of proteins essential for macromolecular transport between cells []. This protein forms hexamers from six structurally very similar protomers []. This hexamer contains a central channel running from the cytosolic pole (formed by the all-alpha domains) to the membrane pole ending at the transmembrane pore shaped by 12 transmembrane helices, rendering an overall mushroom-like structure. The TrwB all-alpha domain appears to be the DNA-binding domain of the structure. ; PDB: 1E9S_D 1E9R_F 1GKI_B 1GL7_G 1GL6_A.
Probab=20.43 E-value=31 Score=40.56 Aligned_cols=16 Identities=50% Similarity=0.721 Sum_probs=12.3
Q ss_pred eEEeecccCCCCceee
Q 001820 471 CIFAYGQTGSGKTYTM 486 (1009)
Q Consensus 471 ~IfAYGqTGSGKTyTM 486 (1009)
-++..|.||||||.+|
T Consensus 17 ~~li~G~~GsGKT~~i 32 (386)
T PF10412_consen 17 HILIIGATGSGKTQAI 32 (386)
T ss_dssp -EEEEE-TTSSHHHHH
T ss_pred cEEEECCCCCCHHHHH
Confidence 4678899999999876
No 362
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=20.42 E-value=8.1e+02 Score=30.96 Aligned_cols=49 Identities=14% Similarity=0.245 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhhHHHhhHHHHHh
Q 001820 324 IFDQQHEDIQELKHTLHTTKAGIQFMQMKFHEEFSNLGIHIHGLAHAAS 372 (1009)
Q Consensus 324 ~~~~~~~~~~~l~~~l~~~k~~~~~~~~~~~~~~~~l~~~~~~l~~~~~ 372 (1009)
.+.+...+|+.|-..++..++........+..++..|+..+........
T Consensus 286 ~L~~kd~~i~~L~~di~~~~~S~~~e~e~~~~qI~~le~~l~~~~~~le 334 (629)
T KOG0963|consen 286 VLNQKDSEIAQLSNDIERLEASLVEEREKHKAQISALEKELKAKISELE 334 (629)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555666666666666666666666666666666665554444333
No 363
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=20.31 E-value=68 Score=38.26 Aligned_cols=18 Identities=44% Similarity=0.558 Sum_probs=15.0
Q ss_pred ceeEEeecccCCCCceee
Q 001820 469 NVCIFAYGQTGSGKTYTM 486 (1009)
Q Consensus 469 N~~IfAYGqTGSGKTyTM 486 (1009)
...|+-+|+||+|||+..
T Consensus 108 ~~~iLl~Gp~GtGKT~lA 125 (412)
T PRK05342 108 KSNILLIGPTGSGKTLLA 125 (412)
T ss_pred CceEEEEcCCCCCHHHHH
Confidence 356899999999999765
No 364
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=20.28 E-value=43 Score=34.20 Aligned_cols=16 Identities=44% Similarity=0.592 Sum_probs=13.6
Q ss_pred eEEeecccCCCCceee
Q 001820 471 CIFAYGQTGSGKTYTM 486 (1009)
Q Consensus 471 ~IfAYGqTGSGKTyTM 486 (1009)
.|+..|..|||||+..
T Consensus 5 ii~i~G~~GsGKsTl~ 20 (188)
T TIGR01360 5 IIFIVGGPGSGKGTQC 20 (188)
T ss_pred EEEEECCCCCCHHHHH
Confidence 4677999999999875
No 365
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=20.23 E-value=40 Score=33.80 Aligned_cols=16 Identities=44% Similarity=0.480 Sum_probs=13.5
Q ss_pred eEEeecccCCCCceee
Q 001820 471 CIFAYGQTGSGKTYTM 486 (1009)
Q Consensus 471 ~IfAYGqTGSGKTyTM 486 (1009)
.|.-+|+.|||||+..
T Consensus 2 iI~i~G~~GSGKstia 17 (171)
T TIGR02173 2 IITISGPPGSGKTTVA 17 (171)
T ss_pred EEEEECCCCCCHHHHH
Confidence 4778999999998765
No 366
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=20.21 E-value=61 Score=42.06 Aligned_cols=27 Identities=15% Similarity=0.244 Sum_probs=18.5
Q ss_pred HHHHHHHhcCCceeEEeecccCCCCceee
Q 001820 458 QPLIRSVLDGYNVCIFAYGQTGSGKTYTM 486 (1009)
Q Consensus 458 ~pLV~svLdG~N~~IfAYGqTGSGKTyTM 486 (1009)
..+++.+- . |..++..|+||||||..+
T Consensus 8 ~~i~~~l~-~-~~~vIi~a~TGSGKTT~v 34 (819)
T TIGR01970 8 PALRDALA-A-HPQVVLEAPPGAGKSTAV 34 (819)
T ss_pred HHHHHHHH-c-CCcEEEECCCCCCHHHHH
Confidence 34444443 2 446678899999999865
No 367
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=20.21 E-value=68 Score=40.21 Aligned_cols=39 Identities=21% Similarity=0.319 Sum_probs=24.8
Q ss_pred CCCCChHhHHhhhHHHHHHHhcCCceeEEeecccCCCCceee
Q 001820 445 GPSATQAEVFSDMQPLIRSVLDGYNVCIFAYGQTGSGKTYTM 486 (1009)
Q Consensus 445 ~~~atQeeVF~~v~pLV~svLdG~N~~IfAYGqTGSGKTyTM 486 (1009)
.+..-|..+..++ +...-.....-++..|+||||||...
T Consensus 235 ~lt~~Q~~ai~~I---~~~~~~~~~~~~Ll~g~TGSGKT~va 273 (630)
T TIGR00643 235 KLTRAQKRVVKEI---LQDLKSDVPMNRLLQGDVGSGKTLVA 273 (630)
T ss_pred CCCHHHHHHHHHH---HHHhccCCCccEEEECCCCCcHHHHH
Confidence 4555576666654 22222333445789999999999865
No 368
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=20.07 E-value=2.9e+02 Score=33.74 Aligned_cols=24 Identities=13% Similarity=0.281 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 001820 317 QSLKQKMIFDQQHEDIQELKHTLH 340 (1009)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~l~~~l~ 340 (1009)
.+..++...++++++|+.|+.+++
T Consensus 70 ALteqQ~kasELEKqLaaLrqElq 93 (475)
T PRK13729 70 ATTEMQVTAAQMQKQYEEIRRELD 93 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555544443
No 369
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=20.01 E-value=4.6e+02 Score=29.62 Aligned_cols=57 Identities=16% Similarity=0.379 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH--------HHhhhhHHHhhHHH
Q 001820 312 EELKSQSLKQKMIFDQQHEDIQELKHTLHTTKAGIQFMQMKFHE--------EFSNLGIHIHGLAH 369 (1009)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~k~~~~~~~~~~~~--------~~~~l~~~~~~l~~ 369 (1009)
.|+++.-.+....+..++.++..|...+..+..++..| ..|.+ ++..|.+++..+..
T Consensus 70 ~eLqe~eek~e~~l~~Lq~ql~~l~akI~k~~~el~~L-~TYkD~EYPvK~vqIa~L~rqlq~lk~ 134 (258)
T PF15397_consen 70 AELQEWEEKEESKLSKLQQQLEQLDAKIQKTQEELNFL-STYKDHEYPVKAVQIANLVRQLQQLKD 134 (258)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 34455555556667777777777777777777777766 33433 45556666555543
Done!