Query 001821
Match_columns 1009
No_of_seqs 295 out of 571
Neff 3.6
Searched_HMMs 29240
Date Tue Mar 26 16:43:44 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/001821.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1117-1120//hhsearch_pdb/001821hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wid_A DNA-binding protein RAV 1.0 1 1 215.6 14.5 114 107-220 6-121 (130)
2 4i1k_A B3 domain-containing tr 1.0 1 1 157.2 10.3 100 110-219 44-145 (146)
3 1yel_A AT1G16640; CESG, protei 1.0 1 1 123.1 10.1 96 111-217 7-102 (104)
4 4b8c_D Glucose-repressible alc 1.0 1 1 63.8 4.9 106 457-577 21-128 (727)
5 1na6_A Ecorii, restriction end 1.0 1 1 43.7 6.3 93 111-204 17-123 (404)
6 3iot_A Maltose-binding protein 1.0 1 1 36.2 1.1 56 507-573 379-434 (449)
7 2jng_A Cullin-7, CUL-7; P53 bi 1.0 1 1 20.5 3.9 75 262-350 6-80 (105)
8 3p8d_A Medulloblastoma antigen 1.0 1 1 19.4 3.9 56 275-348 3-58 (67)
9 3pie_A 5'->3' exoribonuclease 1.0 1 1 18.7 6.1 113 235-355 1021-1136(1155)
10 3qii_A PHD finger protein 20; 1.0 1 1 18.6 3.8 52 278-347 21-72 (85)
No 1
>1wid_A DNA-binding protein RAV1; DNA-binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: b.142.1.2
Probab=1.00 E-value=1 Score=215.63 Aligned_cols=114 Identities=31% Similarity=0.507 Sum_probs=105.1
Q ss_pred CCCCCCEEEEEECCCCCCCCCCCEEECHHHHHHCCCCCCCCCCCCCEEEEEEECCCCEEEEEEEEECCCCCEEECCCCHH
Q ss_conf 79997306999545567998884044020252219999999999960899984799837989999489974034255011
Q 001821 107 QNRQPTEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDYSMQPPAQEIVARDLHDTTWTFRHIYRGQPKRHLLTTGWSV 186 (1009)
Q Consensus 107 ~~~~~~~sF~KtLTaSDVs~~ggLsIPk~~Ae~~FPpLD~s~~~PsqeLvvkDlhGkeW~FRhiyRg~prRhlLTtGWS~ 186 (1009)
..++..++|+|+||+|||+++++|+||+++|++|||+++....+++++|.++|.+|++|+|+|+||+++++|+|++||+.
T Consensus 6 ~~~~~~~~F~K~Lt~SDv~~~~rL~iPk~~a~~~lP~~~~~~~~~~~~l~l~D~~Gk~W~fr~~~~~~~~~~~Lt~GW~~ 85 (130)
T 1wid_A 6 SGRSAEALFEKAVTPSDVGKLNRLVIPKHHAEKHFPLPSSNVSVKGVLLNFEDVNGKVWRFRYSYWNSSQSYVLTKGWSR 85 (130)
T ss_dssp --CCCEEEEEEECCTTTTSSSCCEEECHHHHTTTSCCCSSCCSSCCEEEEEEETTTEEEEEEEEEETTTTEEEEESSHHH
T ss_pred CCCCCCCEEEEEEEHHHCCCCCEEEECHHHHHHHCCCCCCCCCCCCEEEEEEECCCCEEEEEEEEECCCCCEEECCCHHH
T ss_conf 89998624999985577189777996789999668865444578838999995899999999999789996388377488
Q ss_pred HHCCCCCCCCCEEEEEECC--CCCEEEEEEECCCCC
Q ss_conf 3213788889859999736--972999999546889
Q 001821 187 FVSTKRLFAGDSVLFIRDE--KSQLLLGIRRANRQQ 220 (1009)
Q Consensus 187 FVk~KkLvaGDsVVF~R~e--~GeL~VGIRRA~r~~ 220 (1009)
||++|+|++||+|+|++.+ ++.|+|+|||+.+..
T Consensus 86 FV~~~~L~~GD~~~F~~~~~~~~~l~I~~rr~~~~~ 121 (130)
T 1wid_A 86 FVKEKNLRAGDVVSFSRSNGQDQQLYIGWKSRSGSD 121 (130)
T ss_dssp HHHHTTCCTTCEEEEEECCSSSCCEEEEEECCCSCS
T ss_pred HHHHCCCCCCCEEEEEEECCCCCEEEEEEEECCCCC
T ss_conf 778719988989999995389968999999899998
No 2
>4i1k_A B3 domain-containing transcription factor VRN1; B3 domain beta-barrel, DNA binding protein; 1.60A {Arabidopsis thaliana}
Probab=1.00 E-value=1 Score=157.18 Aligned_cols=100 Identities=23% Similarity=0.299 Sum_probs=88.4
Q ss_pred CCCEEEEEECCCCCCCCCCCEEECHHHHHHCCCCCCCCCCCCCEEEEEEECCCCEEEEEEEEECCCCCEEECCCCHHHHC
Q ss_conf 97306999545567998884044020252219999999999960899984799837989999489974034255011321
Q 001821 110 QPTEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDYSMQPPAQEIVARDLHDTTWTFRHIYRGQPKRHLLTTGWSVFVS 189 (1009)
Q Consensus 110 ~~~~sF~KtLTaSDVs~~ggLsIPk~~Ae~~FPpLD~s~~~PsqeLvvkDlhGkeW~FRhiyRg~prRhlLTtGWS~FVk 189 (1009)
+..++|+|+||+||+.++++|.||+.+++++||..+ .++.++|. |+.|+|+|+|++ .+++|++||+.||+
T Consensus 44 s~~P~Fvk~l~~S~v~~~~~L~IP~~Fa~~~lp~~~-------~~i~L~~~-gk~W~v~~~~~~--~~~~ls~GW~~Fv~ 113 (146)
T 4i1k_A 44 PTNPFFRVVLRPSYLYRGCIMYLPSGFAEKYLSGIS-------GFIKVQLA-EKQWPVRCLYKA--GRAKFSQGWYEFTL 113 (146)
T ss_dssp CSSCEEEEECCGGGSSTTCCEECCHHHHHHHCTTCC-------SEEEEEET-TEEEEEEEEEET--TEEEECTTHHHHHH
T ss_pred CCCCEEEEEECCHHCCCCCEEEECHHHHHHHCCCCC-------EEEEEEEC-CCEEEEEEEEEC--CCEEECCCHHHHHH
T ss_conf 999989999785661898679909999997488888-------37999979-947898999958--90787776389888
Q ss_pred CCCCCCCCEEEEEECCCC--CEEEEEEECCCC
Q ss_conf 378888985999973697--299999954688
Q 001821 190 TKRLFAGDSVLFIRDEKS--QLLLGIRRANRQ 219 (1009)
Q Consensus 190 ~KkLvaGDsVVF~R~e~G--eL~VGIRRA~r~ 219 (1009)
+++|++||+|+|...++. .|.|.|.|+...
T Consensus 114 dn~L~~GD~cvFeli~~~~~~f~V~IfR~~e~ 145 (146)
T 4i1k_A 114 ENNLGEGDVCVFELLRTRDFVLKVTAFRVNEY 145 (146)
T ss_dssp HTTCCTTCEEEEEECSSSSCEEEEEEECCC--
T ss_pred HCCCCCCCEEEEEEECCCCEEEEEEEEECCCC
T ss_conf 75999898999999369865999999944578
No 3
>1yel_A AT1G16640; CESG, protein structure initiative, structural genomics, center for eukaryotic structural genomics, unknown function; NMR {Arabidopsis thaliana} SCOP: b.142.1.2
Probab=1.00 E-value=1 Score=123.05 Aligned_cols=96 Identities=25% Similarity=0.397 Sum_probs=83.3
Q ss_pred CCEEEEEECCCCCCCCCCCEEECHHHHHHCCCCCCCCCCCCCEEEEEEECCCCEEEEEEEEECCCCCEEECCCCHHHHCC
Q ss_conf 73069995455679988840440202522199999999999608999847998379899994899740342550113213
Q 001821 111 PTEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDYSMQPPAQEIVARDLHDTTWTFRHIYRGQPKRHLLTTGWSVFVST 190 (1009)
Q Consensus 111 ~~~sF~KtLTaSDVs~~ggLsIPk~~Ae~~FPpLD~s~~~PsqeLvvkDlhGkeW~FRhiyRg~prRhlLTtGWS~FVk~ 190 (1009)
..+.|.|+|+++|. ..+|.||+.+++.+.+.+. ..+.++|..|++|++++.+++ ++.+|++||..||++
T Consensus 7 ~~p~F~K~l~~~~~--~~~L~IP~~F~~~~~~~~~-------~~v~L~~~~G~~W~v~~~~~~--~~~~l~~GW~~Fv~~ 75 (104)
T 1yel_A 7 GEVQFMKPFISEKS--SKSLEIPLGFNEYFPAPFP-------ITVDLLDYSGRSWTVRMKKRG--EKVFLTVGWENFVKD 75 (104)
T ss_dssp CCEEEEEECCHHHH--TTCEECCHHHHTTCCCCCC-------SEEEEEETTSCEEEEEEEEET--TEEEECTTHHHHHHH
T ss_pred CCCCEEEEECCCCC--CCEEECCHHHHHHCCCCCC-------CEEEEECCCCCEEEEEEEEEC--CCEEECCCHHHHHHH
T ss_conf 89878999877775--5318889999986486699-------889999799999999999989--949986294999997
Q ss_pred CCCCCCCEEEEEECCCCCEEEEEEECC
Q ss_conf 788889859999736972999999546
Q 001821 191 KRLFAGDSVLFIRDEKSQLLLGIRRAN 217 (1009)
Q Consensus 191 KkLvaGDsVVF~R~e~GeL~VGIRRA~ 217 (1009)
++|++||.|+|...++..+.|.|.|..
T Consensus 76 ~~L~~GD~lvF~~~~~~~f~V~If~~s 102 (104)
T 1yel_A 76 NNLEDGKYLQFIYDRDRTFYVIIYGHN 102 (104)
T ss_dssp HTCCTTCEEEEEECSSSEEEEEEECSS
T ss_pred CCCCCCCEEEEEECCCCEEEEEEECCC
T ss_conf 599989899999858976999997898
No 4
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=1.00 E-value=1 Score=63.84 Aligned_cols=106 Identities=22% Similarity=0.266 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCH--HHHHHHHHCCCHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCC
Q ss_conf 75325788971000358999988427--8999998229212332117124798888864203301578877664203579
Q 001821 457 PNLQFSKANPQNQVNQLPQSPIAWTQ--QQQLQHLLQNPLNQQQQQHPQLHQQRQQQQQLLHPQQSQQQQQQQQNHHHHN 534 (1009)
Q Consensus 457 ~~~~~~~~~~~~~~~~l~~~~~~~~~--qqq~~~~~~~~~~qqQqq~~q~q~q~Qq~Q~q~~~Q~~q~~qQqqqq~h~h~ 534 (1009)
+.+-+|..+..-+ .++-.+.+--+. ++|+|.... +.+++.+++++++++++++++..|+ |.+|||||+.
T Consensus 21 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~q~-q~~~qqq~~~---- 91 (727)
T 4b8c_D 21 VNINVNASNPLLH-PHLDDPSLLNNPIWKLQLHLAAV---SAQSLGQPNIYARQNAMKKYLATQQ-AQQAQQQAQQ---- 91 (727)
T ss_dssp ----CCSSCTTTS-GGGTSCCCTTSHHHHHHHHHHHH---HHHSTTSTTHHHHHHHHHHHC-------------------
T ss_pred CCCCCCCCCCCCC-CCCCCCHHCCCCHHHHHHHHHHH---CHHCCCCCHHHHHHHHHHHHHHHHC-HHHHHHHHHH----
T ss_conf 5434456885556-77788021048227777788763---3121266049999999998875013-0667888776----
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCC
Q ss_conf 9999999999999999997877999999999751443102110
Q 001821 535 QQPPPPPQLQPSPTPPHSQSQSQSPVPQRPQQQPQQQQQQPQQ 577 (1009)
Q Consensus 535 ~q~~~~~qq~~q~~~~~~~~~~~~q~q~q~qqQ~qqq~Qqqqq 577 (1009)
++++++..++..+.++.++.+++.|+|++++.+...+
T Consensus 92 ------q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s 128 (727)
T 4b8c_D 92 ------QAQQQVPGPFGPGPQAAPPALQPTDFQQSHIAEASKS 128 (727)
T ss_dssp -------------------------------------------
T ss_pred ------HCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCHHHH
T ss_conf ------0667666765668666752000232126566533342
No 5
>1na6_A Ecorii, restriction endonuclease ecorii; site-specific restriction, mutation, replication, hydrolase; 2.10A {Escherichia coli} SCOP: b.142.1.1 c.52.1.22 PDB: 3hqg_A 3hqf_A
Probab=1.00 E-value=1 Score=43.73 Aligned_cols=93 Identities=22% Similarity=0.269 Sum_probs=67.6
Q ss_pred CCEEEEEECCCCCCCCC----CCEEECHHHHHHCCCCCC-CCCCCCCEEEEE--EECCCCEEEEEEEEEC------CCCC
Q ss_conf 73069995455679988----840440202522199999-999999608999--8479983798999948------9974
Q 001821 111 PTEFFCKTLTASDTSTH----GGFSVPRRAAEKIFPPLD-YSMQPPAQEIVA--RDLHDTTWTFRHIYRG------QPKR 177 (1009)
Q Consensus 111 ~~~sF~KtLTaSDVs~~----ggLsIPk~~Ae~~FPpLD-~s~~~PsqeLvv--kDlhGkeW~FRhiyRg------~prR 177 (1009)
....|+|.|++-|++.. .++.+|+......||.++ .....+...+.+ .|..+-++.++.+|.+ ++..
T Consensus 17 ~~~v~~K~LSAnDtgatgshQ~gi~ipk~~l~~lfp~lg~~~e~~~~~~~~~~l~d~d~p~td~~~twYn~R~~~~tRnE 96 (404)
T 1na6_A 17 NYFVYIKRLSANDTGATGGHQVGLYIPSGIVEKLFPSINHTRELNPSVFLTAHVSSHDCPDSEARAIYYNSAHFGKTRNE 96 (404)
T ss_dssp SEEEEEEECCHHHHTCC---CCCCCCCHHHHHHHCGGGCCCSSSSCEEEEEEEESSSCCCCEEEEEEEECGGGTTSCCCE
T ss_pred CCHHEEEECCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCEEEEEEEEECCCCCCCCCCC
T ss_conf 60413577224457887776444578568999863548986556776315778416888427789998326466898874
Q ss_pred EEECCCCH-HHHCCCCCCCCCEEEEEEC
Q ss_conf 03425501-1321378888985999973
Q 001821 178 HLLTTGWS-VFVSTKRLFAGDSVLFIRD 204 (1009)
Q Consensus 178 hlLTtGWS-~FVk~KkLvaGDsVVF~R~ 204 (1009)
|.||. |. .+.-.+...+||.+||.+.
T Consensus 97 yRLt~-~~~~~~~~~~a~~GDLlvia~~ 123 (404)
T 1na6_A 97 KRITR-WGRGSPLQDPENTGALTLLAFK 123 (404)
T ss_dssp EEEEC-CCTTSGGGCGGGTTCEEEEEEE
T ss_pred EEEEE-CCCCCCCCCCCCCCCEEEEEEE
T ss_conf 58840-2789865466888788999872
No 6
>3iot_A Maltose-binding protein, huntingtin fusion protei; HTT-EX1, HD, sugar transport, transport, apoptos disease mutation, nucleus; 3.50A {Escherichia coli k-12} PDB: 3io6_A 3io4_A 3ior_A 3iou_A 3iov_A 3iow_A
Probab=1.00 E-value=1 Score=36.16 Aligned_cols=56 Identities=41% Similarity=0.523 Sum_probs=0.0
Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHC
Q ss_conf 8888864203301578877664203579999999999999999999787799999999975144310
Q 001821 507 QRQQQQQLLHPQQSQQQQQQQQNHHHHNQQPPPPPQLQPSPTPPHSQSQSQSPVPQRPQQQPQQQQQ 573 (1009)
Q Consensus 507 q~Qq~Q~q~~~Q~~q~~qQqqqq~h~h~~q~~~~~qq~~q~~~~~~~~~~~~q~q~q~qqQ~qqq~Q 573 (1009)
+.|+++.|...|+ |+++||||+. ++++++++.+.+....++.+++.+.+++|+..+
T Consensus 379 ~~~~~~~~~~~~~-~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 434 (449)
T 3iot_A 379 KAFESLKSFQQQQ-QQQQQQQQQQ----------QQQPPPPPPPPPPPQLPQPPPQAQPLLPQQSYQ 434 (449)
T ss_dssp HHHHHHHHTC---------------------------------------------------------
T ss_pred HHHHHHHHHCCCC-CCCCCCCCCC----------CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 9999998646432-3656788899----------998798978887699999979899999988755
No 7
>2jng_A Cullin-7, CUL-7; P53 binding domain, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens} SCOP: b.34.9.4 PDB: 2juf_A
Probab=1.00 E-value=1 Score=20.50 Aligned_cols=75 Identities=25% Similarity=0.234 Sum_probs=49.8
Q ss_pred CCCCCCHHHHHHHHHCCCCCCCEEEEEEEECCCCCCEEEEEEEEECCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCC
Q ss_conf 96420357676977227543654545553046764201249988416898888899742045311468789999975668
Q 001821 262 SEFVIPLAKYNKAMYTQVSLGMRFRMMFETEESGVRRYMGTITSISDLDPLRWKNSQWRNLQVGWDESTAGERPSRVSLW 341 (1009)
Q Consensus 262 sEFVVp~~kY~eAl~~~ws~GMRFRM~fEtEdss~rry~GTItgI~d~DP~rWp~S~WR~LqV~WDE~~~~~r~~RVSPW 341 (1009)
+|| -..+.|-.-+..+..+|||+||.=.-||-+. -=.|++. ++ -+ +-+ ..+|.|.... +.-.|+-=
T Consensus 6 sdF-~s~~~Ya~YVr~~l~pGM~VR~~~dyeev~~-GD~G~vl-~s-~~-----Gl~--~vQv~W~~~G---~TyWV~~~ 71 (105)
T 2jng_A 6 SEF-ASGNTYALYVRDTLQPGMRVRMLDDYEEISA-GDEGEFR-QS-NN-----GVP--PVQVFWESTG---RTYWVHWH 71 (105)
T ss_dssp GGS-SSSHHHHHHHHHHCCTTCEEEECSCBTTBCT-TCEEEEE-EE-CT-----TSS--EEEEEETTTT---EEEEEEGG
T ss_pred HHC-CCCHHHHHHHHHCCCCCCEEEEEHHHHHHCC-CCCEEEE-EC-CC-----CCC--CCEEEEHHCC---CEEEEEEE
T ss_conf 553-5500489999854897658752021554156-7742588-63-79-----984--1210003059---36898700
Q ss_pred CCCCCCCCC
Q ss_conf 544456898
Q 001821 342 ETEPVVTPF 350 (1009)
Q Consensus 342 EIEpv~~~~ 350 (1009)
.||.+..+.
T Consensus 72 ~~Ellg~~~ 80 (105)
T 2jng_A 72 MLEILGFEE 80 (105)
T ss_dssp GEEECCCCC
T ss_pred HHHHCCCCC
T ss_conf 112207853
No 8
>3p8d_A Medulloblastoma antigen MU-MB-50.72; tudor domain, lysine-methylated P53 binding, histone binding binding; 2.00A {Homo sapiens}
Probab=1.00 E-value=1 Score=19.45 Aligned_cols=56 Identities=11% Similarity=0.194 Sum_probs=42.2
Q ss_pred HHCCCCCCCEEEEEEEECCCCCCEEEEEEEEECCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 72275436545455530467642012499884168988888997420453114687899999756685444568
Q 001821 275 MYTQVSLGMRFRMMFETEESGVRRYMGTITSISDLDPLRWKNSQWRNLQVGWDESTAGERPSRVSLWETEPVVT 348 (1009)
Q Consensus 275 l~~~ws~GMRFRM~fEtEdss~rry~GTItgI~d~DP~rWp~S~WR~LqV~WDE~~~~~r~~RVSPWEIEpv~~ 348 (1009)
|...|.+|+++.-+| ++ .++|-++|++|... ....|.+++.. .+.|..=+|.|+..
T Consensus 3 ~~~~~~vGd~vmArW-~D---~~yYpA~I~si~~~----------~~Y~V~F~dG~----~etvk~~~ikp~~~ 58 (67)
T 3p8d_A 3 MSSEFQINEQVLACW-SD---CRFYPAKVTAVNKD----------GTYTVKFYDGV----VQTVKHIHVKAFSK 58 (67)
T ss_dssp --CCCCTTCEEEEEC-TT---SCEEEEEEEEECTT----------SEEEEEETTSC----EEEEEGGGEEECC-
T ss_pred CCCCCCCCCEEEEEC-CC---CCEEEEEEEEECCC----------CEEEEEEECCC----EEEEEHHHCCCCCC
T ss_conf 676244699999991-79---98756899998799----------72999994896----69971899442880
No 9
>3pie_A 5'->3' exoribonuclease (XRN1); beta berrel, tudor domain, chromo domain, mRNA turnover, RRN processing, RNA binding, DNA binding; 2.90A {Kluyveromyces lactis} PDB: 3pif_A
Probab=1.00 E-value=1 Score=18.73 Aligned_cols=113 Identities=11% Similarity=0.099 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCHHHHHHHHH-CCCCCCCEEEEEEEECCCCCCEEEEEEEEECCCCCCC
Q ss_conf 222899999995399689998289999964203576769772-2754365454555304676420124998841689888
Q 001821 235 IGILAAAAHAAANNSPFTIFYNPRASPSEFVIPLAKYNKAMY-TQVSLGMRFRMMFETEESGVRRYMGTITSISDLDPLR 313 (1009)
Q Consensus 235 ~gvLAaAahaaat~~~F~V~Y~PRas~sEFVVp~~kY~eAl~-~~ws~GMRFRM~fEtEdss~rry~GTItgI~d~DP~r 313 (1009)
+..+.+++........-.+.=.-+.=+.+.+.....-..-+. ..+.+|+|+.|.=+.-..+..- .|||+||.....
T Consensus 1021 v~~iE~~~~~~~~~~~~~~~k~~~~VPr~allkP~~a~~~L~~Q~F~LGDRVv~VqdsG~VPl~~-kGTVVGi~~~~~-- 1097 (1155)
T 3pie_A 1021 MAAVESEIIKYVSLPDSSEQKKLAKVPREAILNAESSYVLLRSQRFHLGDRVMYIQDSGKVPLHS-KGTVVGYTSIGK-- 1097 (1155)
T ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCCHHHEECHHHHHCCCCCCCCCCCCEEEEECCCCCCCCCC-CEEEEEEECCCC--
T ss_conf 99999999998613576654201489999905977850404577655777599955788884205-148998723887--
Q ss_pred CCCCCCCEEEEECCCCCCCCCCC--CCCCCCCCCCCCCCCCCCC
Q ss_conf 88997420453114687899999--7566854445689865999
Q 001821 314 WKNSQWRNLQVGWDESTAGERPS--RVSLWETEPVVTPFYICPP 355 (1009)
Q Consensus 314 Wp~S~WR~LqV~WDE~~~~~r~~--RVSPWEIEpv~~~~~i~~~ 355 (1009)
=.+|.|-||++=.+...= |-|+-----|..+..++.+
T Consensus 1098 -----~~~ldVvFD~~F~~G~tlggrcs~~RG~~v~~s~lLNlT 1136 (1155)
T 3pie_A 1098 -----NVSIQVLFDNEIIAGNNFGGRLQTRRGLGLDSSFLLNLS 1136 (1155)
T ss_pred -----CEEEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHEEECC
T ss_conf -----527989953675677730563665666424677847748
No 10
>3qii_A PHD finger protein 20; tudor domain, structural genomics, structural GE consortium, SGC, transcription regulator; 2.30A {Homo sapiens}
Probab=1.00 E-value=1 Score=18.65 Aligned_cols=52 Identities=10% Similarity=0.183 Sum_probs=0.0
Q ss_pred CCCCCCEEEEEEEECCCCCCEEEEEEEEECCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 7543654545553046764201249988416898888899742045311468789999975668544456
Q 001821 278 QVSLGMRFRMMFETEESGVRRYMGTITSISDLDPLRWKNSQWRNLQVGWDESTAGERPSRVSLWETEPVV 347 (1009)
Q Consensus 278 ~ws~GMRFRM~fEtEdss~rry~GTItgI~d~DP~rWp~S~WR~LqV~WDE~~~~~r~~RVSPWEIEpv~ 347 (1009)
.|.+|+++-.+| ++ .+||-++|++|... ....|.+++.. .+.|..=+|.|+.
T Consensus 21 ~f~vGd~VlArW-~D---~~yYPAkI~sV~~~----------~~YtV~F~DG~----~etvk~~~IKp~~ 72 (85)
T 3qii_A 21 EFQINEQVLACW-SD---CRFYPAKVTAVNKD----------GTYTVKFYDGV----VQTVKHIHVKAFS 72 (85)
T ss_dssp CCCTTCEEEEEC-TT---SCEEEEEEEEECTT----------SEEEEEETTSC----EEEEEGGGEEECC
T ss_pred CCCCCCEEEEEE-CC---CCEEEEEEEEECCC----------CEEEEEEECCC----EEEECHHHCCCCC
T ss_conf 134599999993-89---98856899998799----------71999993897----6896689943488
Done!