Query 001822
Match_columns 1009
No_of_seqs 43 out of 45
Neff 3.6
Searched_HMMs 29240
Date Tue Mar 26 17:06:37 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/001822.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1117-1120//hhsearch_pdb/001822hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2h5n_A Hypothetical protein PG 1.0 1 1 30.2 11.1 107 769-898 17-123 (133)
2 2h5n_A Hypothetical protein PG 1.0 1 1 28.7 7.8 124 397-551 2-126 (133)
3 2ou3_A Tellurite resistance pr 1.0 1 1 27.3 12.3 109 775-906 33-141 (161)
4 2ou3_A Tellurite resistance pr 1.0 1 1 25.8 11.0 114 417-557 29-142 (161)
5 2jxu_A TERB, KP-TERB; tellurit 1.0 1 1 25.0 7.9 114 420-547 34-148 (153)
6 1uz3_A EMSY protein; chromatin 1.0 1 1 22.0 12.1 84 755-838 10-93 (102)
7 2fmm_E Protein EMSY; ENT domai 1.0 1 1 20.3 12.5 89 754-842 1-89 (133)
8 3pk1_A Induced myeloid leukemi 1.0 1 1 18.7 5.7 51 793-851 88-138 (189)
9 3lcv_B Sisomicin-gentamicin re 1.0 1 1 16.8 3.8 117 152-280 27-154 (281)
10 1xu0_A Prion protein, XLPRP; a 1.0 1 1 16.7 -0.2 20 87-107 19-38 (130)
No 1
>2h5n_A Hypothetical protein PG_1108; SAD, MCSG,PSI, structural genomics, PR structure initiative; 2.01A {Porphyromonas gingivalis} SCOP: a.287.1.2
Probab=1.00 E-value=1 Score=30.25 Aligned_cols=107 Identities=13% Similarity=0.183 Sum_probs=79.0
Q ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCC
Q ss_conf 59999999999998112778989899999999980999589999999999989999999999828879999999998055
Q 001822 769 GLAEQAFRQQAEVILADGQLTKARIEQLNEVQKQVGLPSEYAQKIIKNITTTKMAAAIETAVAQGKLNIKQIRELKEASV 848 (1009)
Q Consensus 769 ~laeqAyrqqaeqiL~dG~Lt~akae~L~eiq~qLgLp~e~AqKiIk~it~~Kls~~ie~~va~GkLs~~~V~eLke~gV 848 (1009)
.+.. .+.=...++.+||..+.+..+++..+..++||+++....+++... +....+...+
T Consensus 17 ~l~a-~~aLl~~VA~ADG~v~~~E~~~l~~~l~~lgl~~~e~~~l~~~~~---------------~~~~~~~~~~----- 75 (133)
T 2h5n_A 17 ELTA-IIKMAKSMVMADGKIKPAEIAVMTREFMRFGILQDQVDLLLKASD---------------SIEASQAVAL----- 75 (133)
T ss_dssp HHHH-HHHHHHHHHHTTSCCCHHHHHHHHHHHGGGTCCHHHHHHHHHHHT---------------TSCHHHHHHH-----
T ss_pred HHHH-HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHH---------------HCCHHHHHHH-----
T ss_conf 9999-999999999876999999999999999991959999999999987---------------2249999999-----
Q ss_pred CHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCHHHH
Q ss_conf 11110039999887799999987228888856899973000148998999
Q 001822 849 DLDNMISESLRENLFKKTVDEIFSSGTGEFDAEEVYEKIPADLSINAEKA 898 (1009)
Q Consensus 849 ~L~~~ised~R~~LFkK~V~e~issGtg~fD~ee~~~kip~dL~I~~ekA 898 (1009)
+ ..++.+.|..+.+--+.=+.+||..+-.+.++++++..-|+++..-.
T Consensus 76 -~-~~~~~e~r~~ll~~L~~IA~ADG~i~~~E~~lLr~ia~~Lgls~~d~ 123 (133)
T 2h5n_A 76 -I-ARMDEERKKYVASYLGVIMASDGDIDDNELALWTLISTLCGLPTMTV 123 (133)
T ss_dssp -H-HTSCHHHHHHHHHHHHHHSCBTTBCCHHHHHHHHHHHHHHTCCCCCH
T ss_pred -H-HCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCHHHH
T ss_conf -8-81899999999999999943678999899999999999839999999
No 2
>2h5n_A Hypothetical protein PG_1108; SAD, MCSG,PSI, structural genomics, PR structure initiative; 2.01A {Porphyromonas gingivalis} SCOP: a.287.1.2
Probab=1.00 E-value=1 Score=28.65 Aligned_cols=124 Identities=17% Similarity=0.288 Sum_probs=74.3
Q ss_pred CCCCEEEECCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 76614650542477876027999999998500799876603899999999970799402467999872599999998532
Q 001822 397 GVGPVSLVGGEFDGDRKMDDLKLLYRAYVTDSLSGGRMEESKLAALNQLRNIFGLGKRESEAIIVDVTSKVYRKRLGQAV 476 (1009)
Q Consensus 397 G~gpvsl~Gg~~d~d~k~dDLK~LYraYL~e~Ls~G~l~~~~~~~L~~LknifGLg~~EAe~I~~eV~~kiYR~rL~~~v 476 (1009)
|+|--+++.-+|+ ..+|.-+...-..=+..+|+++..+...+.++-.-||++..+.+.++.... .
T Consensus 2 ~~~~~~~~~~~~~----~~~l~a~~aLl~~VA~ADG~v~~~E~~~l~~~l~~lgl~~~e~~~l~~~~~-~---------- 66 (133)
T 2h5n_A 2 GLGRQSLNIMTFS----GQELTAIIKMAKSMVMADGKIKPAEIAVMTREFMRFGILQDQVDLLLKASD-S---------- 66 (133)
T ss_dssp CCCCCCCCCCCCC----HHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHGGGTCCHHHHHHHHHHHT-T----------
T ss_pred CCCCCCCCCCCCC----CHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHH-H----------
T ss_conf 6220113478986----099999999999999876999999999999999991959999999999987-2----------
Q ss_pred CCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH-HCCCCCHHHHHHHHHHHHHHCCCHHHHHHH
Q ss_conf 089610027865999866643068956687899999999999876-217779375999974177605535779999
Q 001822 477 SGGALEAADSKASFLQSLCEELHFDPQKASEIHEEIYRQKLQQCV-ADGELNDEDVAALLRLRVMLCVPQQTVEAA 551 (1009)
Q Consensus 477 ~sg~le~a~SkA~~LQ~lc~~L~Fdpe~A~~ihkeIYr~kL~q~V-sd~~ltdedv~aLlr~R~~LcIp~~~V~~a 551 (1009)
.+...+.. ++.. ++|+....+=+ -|-+++ +||.+++.+...|.++-..|+++.+.+..+
T Consensus 67 --------~~~~~~~~-~~~~--~~~e~r~~ll~-----~L~~IA~ADG~i~~~E~~lLr~ia~~Lgls~~d~~~~ 126 (133)
T 2h5n_A 67 --------IEASQAVA-LIAR--MDEERKKYVAS-----YLGVIMASDGDIDDNELALWTLISTLCGLPTMTVMEA 126 (133)
T ss_dssp --------SCHHHHHH-HHHT--SCHHHHHHHHH-----HHHHHSCBTTBCCHHHHHHHHHHHHHHTCCCCCHHHH
T ss_pred --------CCHHHHHH-HHHC--CCHHHHHHHHH-----HHHHHHHCCCCCCHHHHHHHHHHHHHCCCCHHHHHHH
T ss_conf --------24999999-9881--89999999999-----9999943678999899999999999839999999999
No 3
>2ou3_A Tellurite resistance protein of COG3793; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE I3A; 1.85A {Nostoc punctiforme} SCOP: a.287.1.1
Probab=1.00 E-value=1 Score=27.28 Aligned_cols=109 Identities=8% Similarity=0.078 Sum_probs=69.3
Q ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCHHHHC
Q ss_conf 99999998112778989899999999980999589999999999989999999999828879999999998055111100
Q 001822 775 FRQQAEVILADGQLTKARIEQLNEVQKQVGLPSEYAQKIIKNITTTKMAAAIETAVAQGKLNIKQIRELKEASVDLDNMI 854 (1009)
Q Consensus 775 yrqqaeqiL~dG~Lt~akae~L~eiq~qLgLp~e~AqKiIk~it~~Kls~~ie~~va~GkLs~~~V~eLke~gV~L~~~i 854 (1009)
++.....+-+||..+.+..+++..+..+++++++....+++ .....+..++ ++ .+....
T Consensus 33 ~~all~vAkADG~v~~~E~~~i~~~~~~~~l~~~~~~~l~~---------------~~~~~~l~~~--~~----~i~~~~ 91 (161)
T 2ou3_A 33 MKSVLTCAKADGVISPEEKDWALGFCASWGVADWVIEDLKT---------------YEADEALEEV--IA----RSPQVS 91 (161)
T ss_dssp HHHHHHHHHSSSCCCHHHHHHHHHHHHHTTCCHHHHHHHHH---------------CCCCSCHHHH--HT----TCTTGG
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHH---------------CCCCCCHHHH--HH----HHHHHH
T ss_conf 99999999636999999999999999881999999998765---------------0588889999--99----999986
Q ss_pred CHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHH
Q ss_conf 3999988779999998722888885689997300014899899999999999
Q 001822 855 SESLRENLFKKTVDEIFSSGTGEFDAEEVYEKIPADLSINAEKARRVVHELA 906 (1009)
Q Consensus 855 sed~R~~LFkK~V~e~issGtg~fD~ee~~~kip~dL~I~~ekAk~Iv~~~a 906 (1009)
. . |..+.+-.+.=++.+|..+..+.++++++...|+|+......+.....
T Consensus 92 ~-~-~~~~l~~l~~vA~ADG~~~~~E~~~L~~iA~~Lgls~~~~~~l~~~~~ 141 (161)
T 2ou3_A 92 M-A-QRDILLSAIWVSAADGELHEKEKAKIRKMATILGIKEEIVDQLEQLYY 141 (161)
T ss_dssp G-C-HHHHHHHHHHHHHTTSSCCHHHHHHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred C-C-HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_conf 0-0-799999999999875899999999999999984989999999999999
No 4
>2ou3_A Tellurite resistance protein of COG3793; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE I3A; 1.85A {Nostoc punctiforme} SCOP: a.287.1.1
Probab=1.00 E-value=1 Score=25.83 Aligned_cols=114 Identities=13% Similarity=0.163 Sum_probs=69.4
Q ss_pred HHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHH
Q ss_conf 99999999850079987660389999999997079940246799987259999999853208961002786599986664
Q 001822 417 LKLLYRAYVTDSLSGGRMEESKLAALNQLRNIFGLGKRESEAIIVDVTSKVYRKRLGQAVSGGALEAADSKASFLQSLCE 496 (1009)
Q Consensus 417 LK~LYraYL~e~Ls~G~l~~~~~~~L~~LknifGLg~~EAe~I~~eV~~kiYR~rL~~~v~sg~le~a~SkA~~LQ~lc~ 496 (1009)
-.....+-+.=+-.+|+++.++...+.++-..||++..+...+.- .....+-..+++.+-.
T Consensus 29 ~~~f~~all~vAkADG~v~~~E~~~i~~~~~~~~l~~~~~~~l~~-------------------~~~~~~l~~~~~~i~~ 89 (161)
T 2ou3_A 29 SSIYMKSVLTCAKADGVISPEEKDWALGFCASWGVADWVIEDLKT-------------------YEADEALEEVIARSPQ 89 (161)
T ss_dssp HHHHHHHHHHHHHSSSCCCHHHHHHHHHHHHHTTCCHHHHHHHHH-------------------CCCCSCHHHHHTTCTT
T ss_pred HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHH-------------------CCCCCCHHHHHHHHHH
T ss_conf 999999999999636999999999999999881999999998765-------------------0588889999999999
Q ss_pred HCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 3068956687899999999999876217779375999974177605535779999873555
Q 001822 497 ELHFDPQKASEIHEEIYRQKLQQCVADGELNDEDVAALLRLRVMLCVPQQTVEAAHSDICG 557 (1009)
Q Consensus 497 ~L~Fdpe~A~~ihkeIYr~kL~q~Vsd~~ltdedv~aLlr~R~~LcIp~~~V~~ah~dicg 557 (1009)
...-. ..+.+.-..-+.+||.++..+...|.++-..|+|+.+.++.+....-+
T Consensus 90 ~~~~~--------~~~l~~l~~vA~ADG~~~~~E~~~L~~iA~~Lgls~~~~~~l~~~~~~ 142 (161)
T 2ou3_A 90 VSMAQ--------RDILLSAIWVSAADGELHEKEKAKIRKMATILGIKEEIVDQLEQLYYY 142 (161)
T ss_dssp GGGCH--------HHHHHHHHHHHHTTSSCCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHCCH--------HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_conf 86007--------999999999998758999999999999999849899999999999998
No 5
>2jxu_A TERB, KP-TERB; tellurite resistance protein, plasmid, unknown function; NMR {Klebsiella pneumoniae ntuh-k2044}
Probab=1.00 E-value=1 Score=25.02 Aligned_cols=114 Identities=11% Similarity=0.160 Sum_probs=56.4
Q ss_pred HHHHHHHCCCCCCCCCCHHHHHHHHHHHHH-CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHC
Q ss_conf 999998500799876603899999999970-7994024679998725999999985320896100278659998666430
Q 001822 420 LYRAYVTDSLSGGRMEESKLAALNQLRNIF-GLGKRESEAIIVDVTSKVYRKRLGQAVSGGALEAADSKASFLQSLCEEL 498 (1009)
Q Consensus 420 LYraYL~e~Ls~G~l~~~~~~~L~~Lknif-GLg~~EAe~I~~eV~~kiYR~rL~~~v~sg~le~a~SkA~~LQ~lc~~L 498 (1009)
+...-+.=+-.+|+++.++...+.++=.-+ +|++.+...+. .++++.. ..+ +++.......+++.++. +
T Consensus 34 ~~al~~~vA~ADG~v~~~E~~~i~~~l~~~~~l~~~~~~~l~-----~~~~~~~-~~~---~~~~~~g~~~~~~~i~~-~ 103 (153)
T 2jxu_A 34 TVAVCARIAVASDGVSSEEKQKMIGFLRSSEELKVFDTAEVI-----EFFNKLV-TSF---DFDLEIGKGETMKYILA-L 103 (153)
T ss_dssp HHHHHHHHHCCSSSCCSHHHHHHHHHHHHSGGGSSCCHHHHH-----HHHHHHH-HHT---TTCHHHHHHHHHHHHHC-C
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHH-----HHHHHHH-HHC---CCCHHHHHHHHHHHHHH-H
T ss_conf 999999999854899999999999999867413814499999-----9999988-762---74234359999999998-8
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCHHH
Q ss_conf 6895668789999999999987621777937599997417760553577
Q 001822 499 HFDPQKASEIHEEIYRQKLQQCVADGELNDEDVAALLRLRVMLCVPQQT 547 (1009)
Q Consensus 499 ~Fdpe~A~~ihkeIYr~kL~q~Vsd~~ltdedv~aLlr~R~~LcIp~~~ 547 (1009)
.-+|+. ...+|.--.+-..+||.++..+...|.++...|+|+.+.
T Consensus 104 ~~~~~~----~~~~l~~~~~vA~ADG~~~~~E~~~L~~ia~~Lgl~~~~ 148 (153)
T 2jxu_A 104 KDQPEA----AQLALRVGIAVAKSDGNFDDDEKSAVREIARSLGFDPAE 148 (153)
T ss_dssp SSSHHH----HHHHHHHHHHHHTTTTSCSSTHHHHHHHHHHHTTSCSSC
T ss_pred HCCHHH----HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCHHH
T ss_conf 589999----999999999998815899999999999999982969999
No 6
>1uz3_A EMSY protein; chromatin regulator, chromatin regulators, royal family domain; 1.1A {Homo sapiens} SCOP: a.283.1.1 PDB: 1utu_A
Probab=1.00 E-value=1 Score=21.99 Aligned_cols=84 Identities=19% Similarity=0.293 Sum_probs=70.5
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 13888478999998599999999999981127789898999999999809995899999999999899999999998288
Q 001822 755 ILGLTTKEIVDVHRGLAEQAFRQQAEVILADGQLTKARIEQLNEVQKQVGLPSEYAQKIIKNITTTKMAAAIETAVAQGK 834 (1009)
Q Consensus 755 ILGL~~kEi~~VH~~laeqAyrqqaeqiL~dG~Lt~akae~L~eiq~qLgLp~e~AqKiIk~it~~Kls~~ie~~va~Gk 834 (1009)
+|-|+..|+...-..+--.||..-++..-+.|.|+.+|-..|.++++.|+.+++.-...++.+........|...+..+.
T Consensus 10 ~~d~s~~e~~~~l~~LEleAY~svlrAf~AqG~Lsweke~LLt~LR~~L~IS~eeH~~elrr~~sDe~l~~Ire~~~g~~ 89 (102)
T 1uz3_A 10 LLDLSRDECKRILRKLELEAYAGVISALRAQGDLTKEKKDLLGELSKVLSISTERHRAEVRRAVNDERLTTIAHNMSGPN 89 (102)
T ss_dssp GGCCCHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHTCHHHHHHHHHHHCSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHHHHHCCCC
T ss_conf 79864589999999999999999999998537899899999999999948995999999997313578999999851897
Q ss_pred CCHH
Q ss_conf 7999
Q 001822 835 LNIK 838 (1009)
Q Consensus 835 Ls~~ 838 (1009)
-..+
T Consensus 90 t~~~ 93 (102)
T 1uz3_A 90 SSSE 93 (102)
T ss_dssp CSHH
T ss_pred CHHH
T ss_conf 0889
No 7
>2fmm_E Protein EMSY; ENT domain, chromo shadow domain, EMSY protein, heterochroma protein 1, transcription; 1.80A {Homo sapiens} SCOP: a.283.1.1
Probab=1.00 E-value=1 Score=20.27 Aligned_cols=89 Identities=20% Similarity=0.269 Sum_probs=71.4
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 01388847899999859999999999998112778989899999999980999589999999999989999999999828
Q 001822 754 GILGLTTKEIVDVHRGLAEQAFRQQAEVILADGQLTKARIEQLNEVQKQVGLPSEYAQKIIKNITTTKMAAAIETAVAQG 833 (1009)
Q Consensus 754 ~ILGL~~kEi~~VH~~laeqAyrqqaeqiL~dG~Lt~akae~L~eiq~qLgLp~e~AqKiIk~it~~Kls~~ie~~va~G 833 (1009)
+.|-|+..|+...-..+--.||..-++..-+.|.|+.+|-..|.++++.|+.+++.--..++.+.......-|...+..+
T Consensus 1 ~~ld~~~~e~~~~lr~LEleAY~svl~Af~AqG~LSweke~LLt~LR~~L~IS~eeH~~elrr~~sDe~l~~I~~~~~g~ 80 (133)
T 2fmm_E 1 GPLDLSRDECKRILRKLELEAYAGVISALRAQGDLTKEKKDLLGELSKVLSISTERHRAEVRRAVNDERLTTIAHNMSGP 80 (133)
T ss_dssp CTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHCHHHHHHHHHHHCS
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 95422579999999999999999999999970778888999999999996789399999999731088899998860698
Q ss_pred CCCHHHHHH
Q ss_conf 879999999
Q 001822 834 KLNIKQIRE 842 (1009)
Q Consensus 834 kLs~~~V~e 842 (1009)
.-+.+--++
T Consensus 81 ~s~~~W~~e 89 (133)
T 2fmm_E 81 NSSSEWSIE 89 (133)
T ss_dssp CCSHHHHHH
T ss_pred CCHHHHHHC
T ss_conf 436899974
No 8
>3pk1_A Induced myeloid leukemia cell differentiation Pro 1; BCL-2 family fold, regulation of apoptosis, mitochondri apoptosis-apoptosis regulator complex; 2.49A {Homo sapiens}
Probab=1.00 E-value=1 Score=18.68 Aligned_cols=51 Identities=12% Similarity=0.125 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCHH
Q ss_conf 99999999980999589999999999989999999999828879999999998055111
Q 001822 793 IEQLNEVQKQVGLPSEYAQKIIKNITTTKMAAAIETAVAQGKLNIKQIRELKEASVDLD 851 (1009)
Q Consensus 793 ae~L~eiq~qLgLp~e~AqKiIk~it~~Kls~~ie~~va~GkLs~~~V~eLke~gV~L~ 851 (1009)
-..+++|+.||.+.++.+.+. ..+-++..+.+|.+|=.+|..|--++.-|.
T Consensus 88 ~~~F~~m~~qL~it~~~a~~~--------F~~Va~elF~DGi~NWGRIVaLfaFgg~La 138 (189)
T 3pk1_A 88 ETAFQGMLRKLDIKNEDDVKS--------LSRVMIHVFSDGVTNWGRIVTLISFGAFVA 138 (189)
T ss_dssp HHHHHHHHHHHTCCSTTCCHH--------HHHHHHHHTTTSCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCCHHHHH--------HHHHHHHHHCCCCCCHHHHHHHHHHHHHHH
T ss_conf 999999998658898528999--------999999996568855999999999999999
No 9
>3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A*
Probab=1.00 E-value=1 Score=16.79 Aligned_cols=117 Identities=16% Similarity=0.216 Sum_probs=74.5
Q ss_pred CCCCCCCCHHHHHHHH----HHHC--CCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHH
Q ss_conf 9999999977799999----7516--650036644999999987766066999988987456999997887199990222
Q 001822 152 CNDPGAVKREDIEAIA----SKYG--VSKQDEAFNAELSEIYCRFVTSVLPPGGEDLRGDEVDKIVQFKKALGIDDPDAA 225 (1009)
Q Consensus 152 ~~Dp~~l~~e~v~ai~----~kyG--vs~~~~~~~~el~~lY~~~~~sviP~g~~~lkG~E~~~i~~Fk~~LGldD~dAA 225 (1009)
..-=.+|.++.|.-++ .+|+ ...-.++-+..|-.+|+.|+ ||+..+++.| +...+.++.++||.+-
T Consensus 27 s~kYr~v~p~tVrrl~~~~~~~~~g~~~~a~k~~k~~LH~i~ga~~----~~~~~~~~~~----l~~l~~~~~~~d~~~~ 98 (281)
T 3lcv_B 27 SRRYQTVAPATVRRLARAALVAARGDVPDAVKRTKRGLHEIYGAFL----PPSPPNYAAL----LRHLDSAVDAGDDEAV 98 (281)
T ss_dssp TTTTTTBCHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTGGGS----CSSCCCHHHH----HHHHHHHHTTTCHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHC----CCCCCCHHHH----HHHHHHHCCCCCHHHH
T ss_conf 4565546879999999999886479878999999999999988755----8888438999----9999864146986788
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCHHHH--HHHHHHHHEEH--HCCCCC-CCCCCCCCCCC
Q ss_conf 120698799886431037887635989--96342431000--101322-22444531112
Q 001822 226 AMHVEIGRRLFRQRLEVGDRDGDMEQR--WAFQKLIYVST--LVFGEA-SSFLLPWKRVF 280 (1009)
Q Consensus 226 ~~HieigRri~R~r~E~gdr~~d~e~r--raFqkLiyvS~--lvFg~~-s~FLLPWkrvF 280 (1009)
.+++|+++....-|..|=.+++.. ..|+.+ .... |=.|-. --|-+||...+
T Consensus 99 ---~~~~~~~l~~H~STreRLp~lD~fY~~i~~~i-~~p~~VLDLGCG~GpLAl~~~~~~ 154 (281)
T 3lcv_B 99 ---RAALLRAMSVHISTRERLPHLDEFYRELFRHL-PRPNTLRDLACGLNPLAAPWMGLP 154 (281)
T ss_dssp ---HHHHHHHHTTSHHHHHHGGGHHHHHHHHGGGS-CCCSEEEETTCTTGGGCCTTTTCC
T ss_pred ---HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCC-CCCCEEEEECCCCCHHHHHHHHHC
T ss_conf ---99999998518987787076999999998416-998514542468668999998528
No 10
>1xu0_A Prion protein, XLPRP; amphibian, polymorphism, glycoprotein, membrane protein; NMR {Xenopus laevis} SCOP: d.6.1.1
Probab=1.00 E-value=1 Score=16.74 Aligned_cols=20 Identities=30% Similarity=0.511 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHCCCCCC
Q ss_conf 678999997643200013445
Q 001822 87 ATSAVVIAGAVFAGFKLGSKY 107 (1009)
Q Consensus 87 ~~~~~vva~a~a~G~~~G~~~ 107 (1009)
...++.+||+ +.||+||..+
T Consensus 19 ~va~aA~Ag~-~~GY~lG~~~ 38 (130)
T 1xu0_A 19 SVAIGAAAGA-IGGYMLGNAV 38 (130)
T ss_dssp -----------CCEEEEEEEC
T ss_pred HHHHHHHHHC-CCHHHHCCCC
T ss_conf 8888998601-2014540468
Done!