Your job contains 1 sequence.
>001825
MLMADNAWLCGEVSAADEFADDQGLSIDMDTLLGILEEEKQPDRVKSSPGDLSLRNLSQD
ELVQDVGSHSNLQLQSGFKGDMRDIATYPLYGLEISGAESGGLGDSSSQLEPTEQKCSPL
QTCSASFSDWFNQNSGTCCPESVGISQFETPGCSTASSFSEGDGYHFLDHRNTLDFGVLG
AKAGIRFGHVGSHIDSRSVDASPSSITENFDERYGHYGASIGNRLGSSVPEGNLCTYVDV
PYTDAEVSSHNVASTDSTICHGSEIISDDDYYSAMPCYINTGDTIFGDPSSFNFQHLLSS
EETATKPKDEEGEFTTEIACSSSGLVLNAQGGPGKGSMLKVPAIDYLDAKRQCEDSKNGL
PIYGNSLSNITLGDGKRSAQPCTYSHSHSSRTKQMVFAKDEGNDDLFPCWSTVSDSVEPI
DEAVGRNSSYHDGCNSFPFKDSGQSFIGLSPSLLSQNQVVHAKEEHEDLILESKRARFCQ
EICDGSSSRSPIDGRHLSLNLNGSRQYFPYAQPSTLNKKELDGVKEDMEAEIKTRSMASH
LLKLSPESIQSNSSDCKSHVDDEPDICILEDISQPARSNQSLVLGKTLSMNRSACSNHSV
ALGKPVVTSQHSSYSDYPGYPGVPLTGLGGMKSKASDERLILQVAMQGISQPNAEASAPD
GVLAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTE
DDNKRQLETLNLDEEDNGIQVNGLDLVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGT
LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCELAKFDVVITTYSIVSMEV
PKQPLGDKEDEEEKMKIEGEDLPPMYCSSSKKRKCPPSSDRKGSKQKKGPDGLLLDIVAG
PLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLR
YDPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGEDCLLY
The BLAST search returned 2 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 001825
(1009 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2008470 - symbol:EDA16 "embryo sac development... 1098 2.8e-141 4
TAIR|locus:2008096 - symbol:AT1G50410 species:3702 "Arabi... 1033 2.5e-104 1
TAIR|locus:2095360 - symbol:AT3G20010 species:3702 "Arabi... 675 2.2e-92 2
TAIR|locus:2089318 - symbol:AT3G16600 species:3702 "Arabi... 389 4.1e-76 3
UNIPROTKB|E1C1L9 - symbol:TTF2 "Uncharacterized protein" ... 227 6.8e-38 4
UNIPROTKB|E1C366 - symbol:TTF2 "Uncharacterized protein" ... 227 8.0e-38 4
ZFIN|ZDB-GENE-110411-73 - symbol:si:ch1073-303l5.1 "si:ch... 228 1.6e-37 4
WB|WBGene00020742 - symbol:T23H2.3 species:6239 "Caenorha... 215 6.1e-37 4
UNIPROTKB|D4A1K7 - symbol:Ttf2 "Protein Ttf2" species:101... 219 1.1e-35 3
UNIPROTKB|E2RGF7 - symbol:TTF2 "Uncharacterized protein" ... 211 6.0e-35 4
MGI|MGI:1921294 - symbol:Ttf2 "transcription termination ... 218 2.7e-34 4
UNIPROTKB|Q9UNY4 - symbol:TTF2 "Transcription termination... 208 9.0e-34 4
UNIPROTKB|F1SAY2 - symbol:TTF2 "Uncharacterized protein" ... 220 5.2e-33 4
POMBASE|SPBC23E6.02 - symbol:rrp2 "ATP-dependent DNA heli... 248 7.5e-33 4
POMBASE|SPAC17A2.12 - symbol:rrp1 "ATP-dependent DNA heli... 226 1.9e-32 4
UNIPROTKB|I3L7V5 - symbol:TTF2 "Uncharacterized protein" ... 220 2.0e-32 3
UNIPROTKB|F1N2E8 - symbol:TTF2 "Uncharacterized protein" ... 211 3.0e-32 4
ASPGD|ASPL0000065871 - symbol:AN7538 species:162425 "Emer... 215 1.3e-31 3
UNIPROTKB|F1MLM2 - symbol:HLTF "Uncharacterized protein" ... 221 2.2e-30 5
ASPGD|ASPL0000030172 - symbol:AN5483 species:162425 "Emer... 221 4.1e-30 4
TAIR|locus:2162504 - symbol:RAD5 species:3702 "Arabidopsi... 265 5.1e-30 4
POMBASE|SPBC582.10c - symbol:SPBC582.10c "ATP-dependent D... 220 6.4e-30 3
TAIR|locus:2158357 - symbol:AT5G43530 species:3702 "Arabi... 237 7.8e-30 5
ZFIN|ZDB-GENE-030131-3306 - symbol:hltf "helicase-like tr... 218 8.2e-30 4
FB|FBgn0002542 - symbol:lds "lodestar" species:7227 "Dros... 194 1.1e-29 4
UNIPROTKB|E2R9I5 - symbol:HLTF "Uncharacterized protein" ... 219 1.8e-29 5
TAIR|locus:2207175 - symbol:AT1G05120 species:3702 "Arabi... 179 5.1e-29 4
SGD|S000000318 - symbol:RAD16 "Protein that binds damaged... 187 6.8e-29 4
WB|WBGene00010061 - symbol:F54E12.2 species:6239 "Caenorh... 207 8.9e-29 4
CGD|CAL0000717 - symbol:orf19.5675 species:5476 "Candida ... 203 5.1e-28 4
RGD|1309031 - symbol:Hltf "helicase-like transcription fa... 222 4.4e-27 3
TAIR|locus:2196115 - symbol:AT1G02670 species:3702 "Arabi... 169 1.3e-26 3
MGI|MGI:1196437 - symbol:Hltf "helicase-like transcriptio... 221 1.4e-26 3
SGD|S000005717 - symbol:ULS1 "Protein involved in proteol... 188 5.3e-26 4
POMBASE|SPCC330.01c - symbol:rhp16 "Rad16 homolog Rhp16" ... 182 8.6e-26 4
DICTYBASE|DDB_G0272082 - symbol:DDB_G0272082 "CHR group p... 226 2.9e-25 5
UNIPROTKB|I3LM88 - symbol:HLTF "Uncharacterized protein" ... 219 4.8e-25 4
UNIPROTKB|Q14527 - symbol:HLTF "Helicase-like transcripti... 216 8.3e-24 4
ASPGD|ASPL0000056426 - symbol:AN0044 species:162425 "Emer... 239 1.5e-23 4
POMBASE|SPAC13G6.01c - symbol:rad8 "ubiquitin-protein lig... 239 1.0e-22 5
ASPGD|ASPL0000008250 - symbol:AN10794 species:162425 "Eme... 182 2.1e-21 2
UNIPROTKB|G4NIT2 - symbol:MGG_12155 "Uncharacterized prot... 212 5.6e-21 3
UNIPROTKB|G4MPA7 - symbol:MGG_07014 "DNA repair protein R... 180 7.5e-21 5
GENEDB_PFALCIPARUM|PFL2440w - symbol:PFL2440w "DNA repair... 181 7.9e-21 2
UNIPROTKB|Q8I4S6 - symbol:PFL2440w "DNA repair protein rh... 181 7.9e-21 2
CGD|CAL0006085 - symbol:RAD16 species:5476 "Candida albic... 182 5.6e-20 5
TAIR|locus:2064786 - symbol:AT2G40770 species:3702 "Arabi... 193 1.4e-19 4
FB|FBgn0037531 - symbol:CG10445 species:7227 "Drosophila ... 164 2.4e-18 2
CGD|CAL0004569 - symbol:orf19.2097 species:5476 "Candida ... 202 7.0e-18 4
GENEDB_PFALCIPARUM|MAL13P1.216 - symbol:MAL13P1.216 "DNA ... 204 1.2e-17 3
DICTYBASE|DDB_G0282115 - symbol:DDB_G0282115 "CHR group p... 160 1.4e-17 6
UNIPROTKB|E1C5L6 - symbol:SHPRH "Uncharacterized protein"... 160 2.3e-17 3
UNIPROTKB|E1C615 - symbol:SHPRH "Uncharacterized protein"... 160 2.3e-17 3
UNIPROTKB|I3L592 - symbol:LOC100623372 "Uncharacterized p... 148 3.7e-17 3
SGD|S000004022 - symbol:RAD5 "DNA helicase" species:4932 ... 202 4.1e-17 4
UNIPROTKB|E2R8G0 - symbol:SHPRH "Uncharacterized protein"... 157 8.9e-17 5
UNIPROTKB|Q149N8 - symbol:SHPRH "E3 ubiquitin-protein lig... 157 1.5e-16 4
UNIPROTKB|K4DI94 - symbol:SHPRH "SNF2 histone linker PHD ... 157 1.5e-16 4
MGI|MGI:1917581 - symbol:Shprh "SNF2 histone linker PHD R... 157 1.8e-16 4
DICTYBASE|DDB_G0287171 - symbol:DDB_G0287171 "CHR group p... 168 2.1e-16 4
UNIPROTKB|E1BLB1 - symbol:SHPRH "Uncharacterized protein"... 153 4.6e-16 5
ASPGD|ASPL0000049992 - symbol:AN2256 species:162425 "Emer... 181 5.6e-16 4
RGD|1310342 - symbol:Shprh "SNF2 histone linker PHD RING ... 156 5.8e-16 5
DICTYBASE|DDB_G0281949 - symbol:helE "CHR group protein" ... 260 7.9e-16 3
UNIPROTKB|H7C5K0 - symbol:HLTF "Helicase-like transcripti... 216 2.6e-14 1
UNIPROTKB|G3N326 - symbol:LOC788113 "Uncharacterized prot... 141 5.5e-14 3
MGI|MGI:2444036 - symbol:Srcap "Snf2-related CREBBP activ... 141 5.8e-14 5
UNIPROTKB|O53499 - symbol:helZ "PROBABLE HELICASE HELZ" s... 157 6.0e-14 4
UNIPROTKB|J9PA15 - symbol:SRCAP "Uncharacterized protein"... 141 2.5e-13 4
UNIPROTKB|F6XHF3 - symbol:SRCAP "Uncharacterized protein"... 141 4.9e-13 4
UNIPROTKB|E2R6G6 - symbol:SRCAP "Uncharacterized protein"... 141 4.9e-13 4
UNIPROTKB|F1S736 - symbol:SHPRH "Uncharacterized protein"... 157 5.8e-13 3
TIGR_CMR|BA_5487 - symbol:BA_5487 "helicase, putative" sp... 155 7.4e-13 3
WB|WBGene00020235 - symbol:T05A12.4 species:6239 "Caenorh... 111 1.8e-12 3
TAIR|locus:2062999 - symbol:BRM "AT2G46020" species:3702 ... 134 2.0e-12 5
UNIPROTKB|E1BC33 - symbol:LOC788113 "Uncharacterized prot... 141 3.2e-12 3
ASPGD|ASPL0000031617 - symbol:AN10707 species:162425 "Eme... 145 3.7e-12 3
RGD|1565642 - symbol:Srcap "Snf2-related CREBBP activator... 141 1.9e-11 4
UNIPROTKB|F1RG74 - symbol:SRCAP "Uncharacterized protein"... 141 2.5e-11 4
UNIPROTKB|Q71Z25 - symbol:LMOf2365_1665 "Helicase, Snf2 f... 128 2.8e-11 3
ZFIN|ZDB-GENE-070228-1 - symbol:ercc6 "excision repair cr... 125 2.8e-11 4
TAIR|locus:2024198 - symbol:SWI2 "switch 2" species:3702 ... 124 3.4e-11 3
DICTYBASE|DDB_G0292948 - symbol:isw "CHR group protein" s... 129 4.9e-11 4
WB|WBGene00007027 - symbol:ssl-1 species:6239 "Caenorhabd... 144 5.8e-11 4
POMBASE|SPAC144.05 - symbol:SPAC144.05 "ATP-dependent DNA... 144 7.0e-11 3
UNIPROTKB|Q47YP1 - symbol:CPS_3404 "Snf2 family protein" ... 146 9.9e-11 2
TIGR_CMR|CPS_3404 - symbol:CPS_3404 "Snf2 family protein"... 146 9.9e-11 2
TAIR|locus:2150270 - symbol:CHR23 "chromatin remodeling 2... 134 1.0e-10 3
SGD|S000004237 - symbol:IRC20 "Putative helicase" species... 113 2.1e-10 3
TAIR|locus:2173644 - symbol:CHR1 "chromatin remodeling 1"... 119 2.4e-10 3
UNIPROTKB|I3LTT5 - symbol:SMARCA1 "Uncharacterized protei... 136 2.7e-10 4
UNIPROTKB|Q6ZRS2 - symbol:SRCAP "Helicase SRCAP" species:... 141 3.1e-10 4
FB|FBgn0020306 - symbol:dom "domino" species:7227 "Drosop... 128 4.4e-10 3
FB|FBgn0035689 - symbol:CG7376 species:7227 "Drosophila m... 113 4.6e-10 3
DICTYBASE|DDB_G0267638 - symbol:DDB_G0267638 "CHR group p... 135 5.0e-10 5
SGD|S000003796 - symbol:RAD26 "Protein involved in transc... 130 6.9e-10 5
WB|WBGene00002169 - symbol:isw-1 species:6239 "Caenorhabd... 138 8.5e-10 2
DICTYBASE|DDB_G0274075 - symbol:DDB_G0274075 "putative DE... 176 8.7e-10 2
DICTYBASE|DDB_G0273053 - symbol:DDB_G0273053 "putative DE... 176 8.7e-10 2
UNIPROTKB|F6TQG2 - symbol:SMARCA1 "Probable global transc... 136 8.9e-10 4
WARNING: Descriptions of 274 database sequences were not reported due to the
limiting value of parameter V = 100.
>TAIR|locus:2008470 [details] [associations]
symbol:EDA16 "embryo sac development arrest 16"
species:3702 "Arabidopsis thaliana" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA;ISS]
[GO:0004386 "helicase activity" evidence=IEA;ISS] [GO:0005524 "ATP
binding" evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM]
[GO:0008270 "zinc ion binding" evidence=IEA;ISS] [GO:0009553
"embryo sac development" evidence=IMP] InterPro:IPR001841
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS50089 PROSITE:PS51194 SMART:SM00184 SMART:SM00490
Prosite:PS00518 EMBL:CP002684 GO:GO:0005524 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR013083
GO:GO:0004386 GO:GO:0009553 InterPro:IPR017907 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 IPI:IPI00518434 RefSeq:NP_176309.2
UniGene:At.36526 UniGene:At.68763 ProteinModelPortal:F4HTG1
SMR:F4HTG1 PRIDE:F4HTG1 EnsemblPlants:AT1G61140.1 GeneID:842407
KEGG:ath:AT1G61140 OMA:WADELHK Uniprot:F4HTG1
Length = 1280
Score = 1098 (391.6 bits), Expect = 2.8e-141, Sum P(4) = 2.8e-141
Identities = 232/414 (56%), Positives = 292/414 (70%)
Query: 592 RSACSNHSVALGKPVVTSQHSSYSDYPGYPGVPLTGLGGMKSKASDERLILQVAMQGISQ 651
+SA + +A+ PVV+S++S+ S GG+K +++ E +I Q A+Q ++Q
Sbjct: 488 QSAIPHRPLAMKMPVVSSEYSTVSHN-------FNQSGGLKLQSNKENMIFQAALQDLTQ 540
Query: 652 PNAEASAPDGVLAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILK 711
PN+EA PDGVL VPLLRHQRIALSWM QKETS CSGGILADDQGLGKT+STIALILK
Sbjct: 541 PNSEAILPDGVLTVPLLRHQRIALSWMAQKETSGFPCSGGILADDQGLGKTVSTIALILK 600
Query: 712 ERP-PSFRTEDDNKRQLETLNLDE-EDNGIQVNGLDLVKQESDYCRVVPNGSSAKSFNFV 769
ER P+ E+ K+++ L + E ++ +G + ++ +++ N + + V
Sbjct: 601 ERSKPAQACEESTKKEIFDLESETGECAPLKPSGRS---KHFEHSQLLSNENKVGG-DSV 656
Query: 770 EQAKGRPAAGTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCELAKFDVV 829
+ GRPAAGTLVVCPTSV+RQWA+EL KVTS+ +LSVLVYHGSSRTKDP ELAK+DVV
Sbjct: 657 GKVTGRPAAGTLVVCPTSVMRQWADELHKKVTSEANLSVLVYHGSSRTKDPHELAKYDVV 716
Query: 830 ITTYSIVSMEVPKQPLGXXXXXXXXXXXXXXXLPPMYXXXXXXXXXXXXXXXXGSKQKKG 889
+TT+SIVSMEVPKQPL + GSK+KK
Sbjct: 717 VTTFSIVSMEVPKQPLVDDEDEEKDGVHDGGTAATGFCSNKKRKYPPDSKKK-GSKKKK- 774
Query: 890 PDGLLLDIVAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAI 949
++ ++GPLAKV WFRVVLDEAQSIKN++TQVARACWGLRAKRRWCLSGTPIQN+I
Sbjct: 775 -----VEFLSGPLAKVSWFRVVLDEAQSIKNYKTQVARACWGLRAKRRWCLSGTPIQNSI 829
Query: 950 DDLYSYFRFLRYDPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKG 1003
DDLYSYFRFL+YDP++ Y FCS IK PI++NPVKGY+KLQA+LKT+MLRRTKG
Sbjct: 830 DDLYSYFRFLKYDPYSSYVLFCSTIKNPITRNPVKGYQKLQAILKTVMLRRTKG 883
Score = 134 (52.2 bits), Expect = 2.8e-141, Sum P(4) = 2.8e-141
Identities = 40/111 (36%), Positives = 52/111 (46%)
Query: 118 SPLQTCSASFSDWFNQNSGTCCPESVGISQFETPGCSTASSFSEGDGYHFLDHRNTLDFG 177
SP TCSAS DWF+ + G E+ G+SQ E CS +SSFS+ DG N + F
Sbjct: 88 SPAHTCSASLKDWFSLSQGEQPVETCGVSQSEMTSCSISSSFSDPDG-------NMMAFN 140
Query: 178 VLGAKAGIRFGHVGSHIDSRSVDASPSSITENFDERYGHYGASIGNRLGSS 228
+ S D + +D S S +T FD G YG +G SS
Sbjct: 141 PVNCDVD-----TVSKQDDKIID-SKSMLTPYFDNVTG-YGVGLGANHNSS 184
Score = 105 (42.0 bits), Expect = 2.8e-141, Sum P(4) = 2.8e-141
Identities = 27/88 (30%), Positives = 46/88 (52%)
Query: 513 PSTLNKKELDGVKEDMEAE-IKTRSMASHLLKLSPESIQSNSSDCKSHVDDEPDICILED 571
P T N + D + + E I+ R + S S ES+QS+SS+C S DD+ D+CI+E
Sbjct: 426 PVTQNNEYKDFQIQQGDREYIQPRGIDSQFSNASFESVQSHSSECISDSDDDSDVCIIEP 485
Query: 572 ISQPARSNQSLVLGKTLSMNRSACSNHS 599
Q A ++ L + + + + +H+
Sbjct: 486 YGQSAIPHRPLAMKMPVVSSEYSTVSHN 513
Score = 92 (37.4 bits), Expect = 2.8e-141, Sum P(4) = 2.8e-141
Identities = 58/232 (25%), Positives = 95/232 (40%)
Query: 248 SSHNVASTDSTICHGSEIISD--DDYYS-AMPCYINTGDTIFGD--PSS---FNFQHLLS 299
++HN +S S + S +SD D+Y S A CY NT T D P+S F F+ +
Sbjct: 179 ANHN-SSAMSVFFNNSNSLSDSADNYVSSAQDCY-NTSGTSLSDHTPNSVQNFAFEFFPN 236
Query: 300 SEETATKPKDEEGEFTTEIACSSSGLVLNAQGGPGKGSMLKVPAIDYLDAKR---QCEDS 356
EE D E + + +S ++ + G GS+ + P ID+ A+ + E +
Sbjct: 237 KEEAVN---DVESGVSESQSDGASRMIFDRHGRVDNGSLERKPPIDFSSARGISFKFESN 293
Query: 357 KNGLPI----YGNSLSNITLGDGKRSAQPCTYSHSHSSRTKQMVFAKDEGNDDLFPCWST 412
+ P Y + S++ D R P YS S V K E + +S+
Sbjct: 294 PSVSPACVKPYNSFDSHLADSDLDR---PNNYSCSFQDNKTVHVKVKPEAESEKV-VYSS 349
Query: 413 VSDSVEPIDEAV--GRNSSYHDGCNSFPFK-----DSGQSFIGLSPSLLSQN 457
V D+A G + + G +S + G S++ +L SQ+
Sbjct: 350 VPGEFSVRDDAYLSGETNRWWSGASSSAVSYQTDIEKGYSYMAPQTALPSQD 401
Score = 46 (21.3 bits), Expect = 1.5e-126, Sum P(3) = 1.5e-126
Identities = 13/34 (38%), Positives = 18/34 (52%)
Query: 237 YVDVPYTDAEVSSHNVASTDSTICHGSEIISDDD 270
Y+ D++ S+ AS +S H SE ISD D
Sbjct: 445 YIQPRGIDSQFSN---ASFESVQSHSSECISDSD 475
Score = 41 (19.5 bits), Expect = 6.3e-136, Sum P(4) = 6.3e-136
Identities = 10/35 (28%), Positives = 15/35 (42%)
Query: 410 WSTVSDSVEPIDEAVGRNSSYHDGCNSFPFKDSGQ 444
WS S S + + SY + P +DSG+
Sbjct: 370 WSGASSSAVSYQTDIEKGYSYMAPQTALPSQDSGK 404
Score = 37 (18.1 bits), Expect = 1.3e-07, Sum P(3) = 1.3e-07
Identities = 7/14 (50%), Positives = 9/14 (64%)
Query: 750 ESDYCRVVPNGSSA 763
+SD C + P G SA
Sbjct: 477 DSDVCIIEPYGQSA 490
>TAIR|locus:2008096 [details] [associations]
symbol:AT1G50410 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA;ISS] [GO:0004386 "helicase activity"
evidence=IEA;ISS] [GO:0005524 "ATP binding" evidence=IEA;ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008270 "zinc ion binding"
evidence=IEA;ISS] [GO:0000956 "nuclear-transcribed mRNA catabolic
process" evidence=RCA] [GO:0006487 "protein N-linked glycosylation"
evidence=RCA] [GO:0006816 "calcium ion transport" evidence=RCA]
[GO:0010413 "glucuronoxylan metabolic process" evidence=RCA]
[GO:0045492 "xylan biosynthetic process" evidence=RCA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50089 PROSITE:PS51194
SMART:SM00184 SMART:SM00490 Prosite:PS00518 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005524 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR013083 GO:GO:0004386
InterPro:IPR017907 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 HOGENOM:HOG000241058 EMBL:AY039939 EMBL:AY142669
IPI:IPI00533542 RefSeq:NP_564568.1 UniGene:At.15795
ProteinModelPortal:Q94BR5 SMR:Q94BR5 PaxDb:Q94BR5 PRIDE:Q94BR5
EnsemblPlants:AT1G50410.1 GeneID:841463 KEGG:ath:AT1G50410
TAIR:At1g50410 InParanoid:Q94BR5 OMA:EVRVMIM PhylomeDB:Q94BR5
ProtClustDB:CLSN2684720 ArrayExpress:Q94BR5 Genevestigator:Q94BR5
Uniprot:Q94BR5
Length = 981
Score = 1033 (368.7 bits), Expect = 2.5e-104, P = 2.5e-104
Identities = 228/421 (54%), Positives = 279/421 (66%)
Query: 599 SVALGKPVVTSQHSSYSDYPGYPGVPLTGLGGMKSKASDERLILQVAMQGISQPNAEASA 658
SVA G S + SD P + G+G ++ +DERLI Q A+Q ++QP +E
Sbjct: 163 SVAHGTSASPSHFNGLSD----P-MHRNGIGEERNSENDERLIYQAALQELNQPKSEVDL 217
Query: 659 PDGVLAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKE-RPPSF 717
P G+L+VPL++HQ+IAL+WM QKET+SLHC GGILADDQGLGKT+STIALILK+
Sbjct: 218 PAGLLSVPLMKHQKIALAWMFQKETNSLHCMGGILADDQGLGKTVSTIALILKQMHEAKL 277
Query: 718 RTEDDNKRQLETLNLDEEDNGIQVNGLDLVKQESDYCRVVPNGSSAKSFNFVEQAKG--- 774
++++ ++ E L+LD +D N + K ES NGS + +++AKG
Sbjct: 278 KSKNSGNQEAEALDLDADDES--ENAFE--KPESK----ASNGSGVNGDSGIKKAKGEEA 329
Query: 775 ----------RPAAGTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCELA 824
RPAAGTL+VCP SV+RQWA EL KVT + LSVL+YHG +RTKDP ELA
Sbjct: 330 STSTRKFNRKRPAAGTLIVCPASVVRQWARELDEKVTDEAKLSVLIYHGGNRTKDPIELA 389
Query: 825 KFDVVITTYSIVSMEVPKQPLGXXXXXXXXXXXXXXXLPPMYXXXXXXXXXXXXXXXXGS 884
K+DVV+TTY+IVS EVPKQPL L + S
Sbjct: 390 KYDVVMTTYAIVSNEVPKQPL-VDDDENDEKNSEKYGLASGFSINKKRKNVVGTTKK--S 446
Query: 885 KQKKGPD--GLLLDIVAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSG 942
K+KKG + G D +G LAKVGWFRVVLDEAQ+IKNHRTQVARAC GLRAKRRWCLSG
Sbjct: 447 KKKKGNNNAGDSSDPDSGTLAKVGWFRVVLDEAQTIKNHRTQVARACCGLRAKRRWCLSG 506
Query: 943 TPIQNAIDDLYSYFRFLRYDPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTK 1002
TPIQN IDDLYSYFRFL+YDP+AVYKSFC IK PIS+N ++GYKKLQAVL+ IMLRRTK
Sbjct: 507 TPIQNTIDDLYSYFRFLKYDPYAVYKSFCHQIKGPISRNSLQGYKKLQAVLRAIMLRRTK 566
Query: 1003 G 1003
G
Sbjct: 567 G 567
>TAIR|locus:2095360 [details] [associations]
symbol:AT3G20010 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA;ISS] [GO:0004386 "helicase activity"
evidence=IEA;ISS] [GO:0005524 "ATP binding" evidence=IEA;ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008270 "zinc ion binding"
evidence=IEA;ISS] [GO:0006306 "DNA methylation" evidence=RCA]
[GO:0006346 "methylation-dependent chromatin silencing"
evidence=RCA] [GO:0007267 "cell-cell signaling" evidence=RCA]
[GO:0009616 "virus induced gene silencing" evidence=RCA]
[GO:0009855 "determination of bilateral symmetry" evidence=RCA]
[GO:0010014 "meristem initiation" evidence=RCA] [GO:0010050
"vegetative phase change" evidence=RCA] [GO:0010073 "meristem
maintenance" evidence=RCA] [GO:0010267 "production of ta-siRNAs
involved in RNA interference" evidence=RCA] [GO:0016246 "RNA
interference" evidence=RCA] [GO:0031047 "gene silencing by RNA"
evidence=RCA] [GO:0031507 "heterochromatin assembly" evidence=RCA]
[GO:0035196 "production of miRNAs involved in gene silencing by
miRNA" evidence=RCA] [GO:0045787 "positive regulation of cell
cycle" evidence=RCA] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50089
PROSITE:PS51194 SMART:SM00184 SMART:SM00490 Prosite:PS00518
GO:GO:0005524 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR013083
GO:GO:0004386 InterPro:IPR017907 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:AP002050 HSSP:Q99728
HOGENOM:HOG000241058 ProtClustDB:CLSN2684720 IPI:IPI00543291
RefSeq:NP_188635.1 UniGene:At.43523 ProteinModelPortal:Q9LHE4
SMR:Q9LHE4 PaxDb:Q9LHE4 PRIDE:Q9LHE4 EnsemblPlants:AT3G20010.1
GeneID:821539 KEGG:ath:AT3G20010 TAIR:At3g20010 InParanoid:Q9LHE4
OMA:SSAICYE PhylomeDB:Q9LHE4 Genevestigator:Q9LHE4 Uniprot:Q9LHE4
Length = 1047
Score = 675 (242.7 bits), Expect = 2.2e-92, Sum P(2) = 2.2e-92
Identities = 136/229 (59%), Positives = 161/229 (70%)
Query: 775 RPAAGTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCELAKFDVVITTYS 834
RPAAGTL+VCP SV+RQWA EL KV+ + LSVLVYHGS+RTKDP ELA++DVV+TTY+
Sbjct: 411 RPAAGTLIVCPASVVRQWARELDEKVSEESKLSVLVYHGSNRTKDPNELAEYDVVVTTYA 470
Query: 835 IVSMEVPKQPLGXXXXXXXXXXXXXXXLPPMYXXXXXXXXXXXXXXXXGSKQKKGPDGLL 894
IV+ E P + L L + + +K +
Sbjct: 471 IVTNEAPNKFL-VDEDENDEKNTDRYGLASGFSNNKKRKVVVGASKKSKRRGRKSTNDTS 529
Query: 895 LDIVAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYS 954
+ GPL KVGWFR+VLDEAQ+IKN+RTQ+AR+C LRAKRRWCLSGTPIQN IDDLYS
Sbjct: 530 SEPDCGPLGKVGWFRIVLDEAQTIKNYRTQMARSCCTLRAKRRWCLSGTPIQNTIDDLYS 589
Query: 955 YFRFLRYDPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKG 1003
YFRFLRYDP+AVYKSF S IKVPIS+N +GYKKLQAVL+ IMLRRTKG
Sbjct: 590 YFRFLRYDPYAVYKSFYSTIKVPISRNSCQGYKKLQAVLRAIMLRRTKG 638
Score = 310 (114.2 bits), Expect = 2.2e-92, Sum P(2) = 2.2e-92
Identities = 63/116 (54%), Positives = 85/116 (73%)
Query: 624 PLTGLGGMKSKA--SDERLILQVAMQGISQPNAEASAPDGVLAVPLLRHQRIALSWMVQK 681
P+ GG + + +DERL+ Q A+Q ++QP E+ P G L+VPL+RHQ+IAL+WM QK
Sbjct: 236 PMHRFGGGEDRNPDNDERLVYQAALQVLNQPMTESDLPPGTLSVPLMRHQKIALAWMFQK 295
Query: 682 ETSSLHCSGGILADDQGLGKTISTIALILKERPPS-FRTEDDNKRQLETLNLDEED 736
ETSS +C GGILADDQGLGKT+STIALILK++ S ++E K++ E L LD +D
Sbjct: 296 ETSSFNCPGGILADDQGLGKTVSTIALILKQKIVSQLKSESSCKQETEALVLDADD 351
Score = 58 (25.5 bits), Expect = 8.2e-66, Sum P(2) = 8.2e-66
Identities = 35/129 (27%), Positives = 58/129 (44%)
Query: 20 ADDQGLSIDMDTLLGILEEEKQPDRVKSSPGDLSLRNLSQDELVQDVGSHS-NLQLQSG- 77
ADDQGL + T+ IL++ K ++KS + S + + LV D S N + +SG
Sbjct: 308 ADDQGLGKTVSTIALILKQ-KIVSQLKS---ESSCKQ-ETEALVLDADDESDNAKHESGS 362
Query: 78 -FKGDMRDIATYPLYGLEISGAESGGLGDSSSQLEPTEQKCSPLQTCSASFSDWFNQNSG 136
K +++ + L G + + SS +E E + + + +F W +G
Sbjct: 363 HVKPELKVSSNSETSVLSACGNDE----NDSSDMEKAEDE--EANSSTRAFQ-WKRPAAG 415
Query: 137 TC--CPESV 143
T CP SV
Sbjct: 416 TLIVCPASV 424
Score = 42 (19.8 bits), Expect = 4.0e-64, Sum P(2) = 4.0e-64
Identities = 16/51 (31%), Positives = 23/51 (45%)
Query: 521 LDGVKEDMEAEIKTRSMASHLLKLSPESIQSNSSDCKSHVDDEPDICILED 571
LD E A+ ++ S LK+S S S S C + +D D+ ED
Sbjct: 347 LDADDESDNAKHESGSHVKPELKVSSNSETSVLSACGNDENDSSDMEKAED 397
>TAIR|locus:2089318 [details] [associations]
symbol:AT3G16600 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA;ISS] [GO:0004386 "helicase activity"
evidence=IEA;ISS] [GO:0005524 "ATP binding" evidence=IEA;ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008270 "zinc ion binding"
evidence=IEA;ISS] InterPro:IPR001841 InterPro:IPR018957
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS50089 PROSITE:PS51194 SMART:SM00184 SMART:SM00490
Pfam:PF00097 Prosite:PS00518 GO:GO:0005524 EMBL:CP002686
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10
InterPro:IPR013083 GO:GO:0004386 InterPro:IPR017907
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 OMA:QACNHPQ
IPI:IPI00536054 RefSeq:NP_188282.1 UniGene:At.53337
ProteinModelPortal:F4J2R0 PRIDE:F4J2R0 EnsemblPlants:AT3G16600.1
GeneID:820911 KEGG:ath:AT3G16600 Uniprot:F4J2R0
Length = 638
Score = 389 (142.0 bits), Expect = 4.1e-76, Sum P(3) = 4.1e-76
Identities = 74/113 (65%), Positives = 88/113 (77%)
Query: 891 DGL-LLDIVAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAI 949
DG L+ G L +V W RVVLDEA +IKNHRT +A+AC+ LRAKRRWCL+GTPI+N +
Sbjct: 196 DGSSLIQPHVGALGRVRWLRVVLDEAHTIKNHRTLIAKACFSLRAKRRWCLTGTPIKNKV 255
Query: 950 DDLYSYFRFLRYDPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTK 1002
DDLYSYFRFLRY P+A+ SF IK PI K P+ GYKKLQA+L+ IMLRRTK
Sbjct: 256 DDLYSYFRFLRYHPYAMCNSFHQRIKAPIDKKPLHGYKKLQAILRGIMLRRTK 308
Score = 257 (95.5 bits), Expect = 4.1e-76, Sum P(3) = 4.1e-76
Identities = 52/90 (57%), Positives = 64/90 (71%)
Query: 637 DERLILQVAMQGISQPNAEASAPDGVLAVPLLRHQRIALSWMVQKETSSLHCSGGILADD 696
+ER+I Q A+Q + QP E P GVL VPL+RHQ+IAL+WM +KE S HC GGILADD
Sbjct: 23 NERVIYQAALQDLKQPKTEKDLPPGVLTVPLMRHQKIALNWMRKKEKRSRHCLGGILADD 82
Query: 697 QGLGKTISTIALILKERPPSFRTEDDNKRQ 726
QGLGKTISTI+LIL ++ S + K Q
Sbjct: 83 QGLGKTISTISLILLQKLKSQSKQRKRKGQ 112
Score = 242 (90.2 bits), Expect = 4.1e-76, Sum P(3) = 4.1e-76
Identities = 45/82 (54%), Positives = 64/82 (78%)
Query: 764 KSFNFVEQAKGRPAAGTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCEL 823
KS + + KG+ + GTL+VCP SV++QWA E++ KV+ + LSVLV+HGS RTKDP E+
Sbjct: 101 KSQSKQRKRKGQNSGGTLIVCPASVVKQWAREVKEKVSDEHKLSVLVHHGSHRTKDPTEI 160
Query: 824 AKFDVVITTYSIVSMEVPKQPL 845
A +DVV+TTY+IV+ EVP+ P+
Sbjct: 161 AIYDVVMTTYAIVTNEVPQNPM 182
Score = 43 (20.2 bits), Expect = 1.2e-32, Sum P(2) = 1.2e-32
Identities = 12/35 (34%), Positives = 19/35 (54%)
Query: 20 ADDQGLSIDMDTL-LGILEEEKQPDRVKSSPGDLS 53
ADDQGL + T+ L +L++ K + + G S
Sbjct: 80 ADDQGLGKTISTISLILLQKLKSQSKQRKRKGQNS 114
>UNIPROTKB|E1C1L9 [details] [associations]
symbol:TTF2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR010666 Pfam:PF00176 Pfam:PF00271 Pfam:PF06839
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0003677 GO:GO:0008270 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00700000104545 OMA:WCGSIPW EMBL:AADN02032807
IPI:IPI00821328 Ensembl:ENSGALT00000036922 Uniprot:E1C1L9
Length = 1167
Score = 227 (85.0 bits), Expect = 6.8e-38, Sum P(4) = 6.8e-38
Identities = 47/104 (45%), Positives = 65/104 (62%)
Query: 901 PLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLR 960
PL +V W RV+LDEA +IKN + Q + A LRA RW ++GTPIQN + D+YS RFLR
Sbjct: 728 PLLRVAWARVILDEAHTIKNPKVQTSIAVCKLRASARWAVTGTPIQNNLLDMYSLLRFLR 787
Query: 961 YDPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGE 1004
PF YK + K + N KG +L + ++++LRRTK +
Sbjct: 788 CSPFDEYKVW----KYQVDNNTKKGGDRLSLLTRSLLLRRTKDQ 827
Score = 163 (62.4 bits), Expect = 6.8e-38, Sum P(4) = 6.8e-38
Identities = 29/66 (43%), Positives = 46/66 (69%)
Query: 776 PAAGTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCELAKFDVVITTYSI 835
P+ TL++CP S++ W +E+ +V S G L V +YHG +R K L+++D+V+TTYS+
Sbjct: 640 PSCSTLIICPASLIHHWKKEIDRRV-SFGKLRVYLYHGPNREKHAEVLSEYDIVVTTYSL 698
Query: 836 VSMEVP 841
+S EVP
Sbjct: 699 LSKEVP 704
Score = 163 (62.4 bits), Expect = 6.8e-38, Sum P(4) = 6.8e-38
Identities = 69/234 (29%), Positives = 107/234 (45%)
Query: 514 STLNKKELDGVKEDMEAEIKTRSMASHLLKLSP-ESIQSNSSDCKSHVDDEPDICILEDI 572
+T+N + L + + E++ A L +S ++I+ + EP +
Sbjct: 415 ATVNIQVLPDKGQRLVKEVQDLEAALSALNISTTDTIEKGENSASGGRCGEP---LPNSF 471
Query: 573 SQPARSN--QSLVLGKTLSMNRSACSNH--SVALGKPVVTSQ-HSSYSDYPGYPGVPLTG 627
S+P + L LG + S+ +H + ALG S G +T
Sbjct: 472 SRPGGTKLITPLPLGDHKAGTSSSSHSHPSAAALGSSEYFGHGFGMNSGVQNLYGGRMTE 531
Query: 628 --LGGMKSKASDERLILQVAMQGISQPNAEASAPDGVLAVPLLRHQRIALSWMVQKETSS 685
+ + S SD L +++ A A P G L VPLL HQR AL+W++ +E S
Sbjct: 532 VRIRAVHSAISDAINHLHKSLESCPTEQAVAEDPSG-LKVPLLLHQRQALAWLLWRE-SQ 589
Query: 686 LHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGI 739
C GGILADD GLGKT++ IALIL ++ +TE +K+ LE L D+ +
Sbjct: 590 RPC-GGILADDMGLGKTLTMIALILTQK--QMKTEKGSKK-LEVW-LSRNDSTV 638
Score = 46 (21.3 bits), Expect = 6.8e-38, Sum P(4) = 6.8e-38
Identities = 23/85 (27%), Positives = 35/85 (41%)
Query: 411 STVSDSVEPID-EAVGRNSSYHDGCNSFP-FKDSGQSFIGLSPSLLSQNQVVHA-KEEHE 467
ST S E D E + C S P K+S S L S + + H KE++
Sbjct: 172 STSGSSTEKEDLEELKTVKKQSKECRSDPELKESAVSESKLCLSETWKGKNTHQDKEKYG 231
Query: 468 DLILESKRARFCQEICDGSSSRSPI 492
+ ESK++ ++ G S P+
Sbjct: 232 GSVRESKKSEHVEKEPGGRSELFPV 256
Score = 37 (18.1 bits), Expect = 5.8e-37, Sum P(4) = 5.8e-37
Identities = 8/26 (30%), Positives = 13/26 (50%)
Query: 28 DMDTLLGILEEEKQPDRVKSSPGDLS 53
D + G + E K+ + V+ PG S
Sbjct: 226 DKEKYGGSVRESKKSEHVEKEPGGRS 251
>UNIPROTKB|E1C366 [details] [associations]
symbol:TTF2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR010666
Pfam:PF00176 Pfam:PF00271 Pfam:PF06839 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003677 GO:GO:0008270
GO:GO:0004386 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00700000104545 EMBL:AADN02032807 IPI:IPI00602086
Ensembl:ENSGALT00000024603 Uniprot:E1C366
Length = 1150
Score = 227 (85.0 bits), Expect = 8.0e-38, Sum P(4) = 8.0e-38
Identities = 47/104 (45%), Positives = 65/104 (62%)
Query: 901 PLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLR 960
PL +V W RV+LDEA +IKN + Q + A LRA RW ++GTPIQN + D+YS RFLR
Sbjct: 711 PLLRVAWARVILDEAHTIKNPKVQTSIAVCKLRASARWAVTGTPIQNNLLDMYSLLRFLR 770
Query: 961 YDPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGE 1004
PF YK + K + N KG +L + ++++LRRTK +
Sbjct: 771 CSPFDEYKVW----KYQVDNNTKKGGDRLSLLTRSLLLRRTKDQ 810
Score = 163 (62.4 bits), Expect = 8.0e-38, Sum P(4) = 8.0e-38
Identities = 29/66 (43%), Positives = 46/66 (69%)
Query: 776 PAAGTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCELAKFDVVITTYSI 835
P+ TL++CP S++ W +E+ +V S G L V +YHG +R K L+++D+V+TTYS+
Sbjct: 623 PSCSTLIICPASLIHHWKKEIDRRV-SFGKLRVYLYHGPNREKHAEVLSEYDIVVTTYSL 681
Query: 836 VSMEVP 841
+S EVP
Sbjct: 682 LSKEVP 687
Score = 162 (62.1 bits), Expect = 8.0e-38, Sum P(4) = 8.0e-38
Identities = 46/107 (42%), Positives = 62/107 (57%)
Query: 633 SKASDERLILQVAMQGISQPNAEASAPDGVLAVPLLRHQRIALSWMVQKETSSLHCSGGI 692
S SD L +++ A A P G L VPLL HQR AL+W++ +E S C GGI
Sbjct: 522 SAISDAINHLHKSLESCPTEQAVAEDPSG-LKVPLLLHQRQALAWLLWRE-SQRPC-GGI 578
Query: 693 LADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGI 739
LADD GLGKT++ IALIL ++ +TE +K+ LE L D+ +
Sbjct: 579 LADDMGLGKTLTMIALILTQK--QMKTEKGSKK-LEVW-LSRNDSTV 621
Score = 46 (21.3 bits), Expect = 8.0e-38, Sum P(4) = 8.0e-38
Identities = 23/85 (27%), Positives = 35/85 (41%)
Query: 411 STVSDSVEPID-EAVGRNSSYHDGCNSFP-FKDSGQSFIGLSPSLLSQNQVVHA-KEEHE 467
ST S E D E + C S P K+S S L S + + H KE++
Sbjct: 172 STSGSSTEKEDLEELKTVKKQSKECRSDPELKESAVSESKLCLSETWKGKNTHQDKEKYG 231
Query: 468 DLILESKRARFCQEICDGSSSRSPI 492
+ ESK++ ++ G S P+
Sbjct: 232 GSVRESKKSEHVEKEPGGRSELFPV 256
Score = 37 (18.1 bits), Expect = 6.8e-37, Sum P(4) = 6.8e-37
Identities = 8/26 (30%), Positives = 13/26 (50%)
Query: 28 DMDTLLGILEEEKQPDRVKSSPGDLS 53
D + G + E K+ + V+ PG S
Sbjct: 226 DKEKYGGSVRESKKSEHVEKEPGGRS 251
>ZFIN|ZDB-GENE-110411-73 [details] [associations]
symbol:si:ch1073-303l5.1 "si:ch1073-303l5.1"
species:7955 "Danio rerio" [GO:0004386 "helicase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR010666
Pfam:PF00176 Pfam:PF00271 Pfam:PF06839 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-110411-73 GO:GO:0005524 GO:GO:0003677
GO:GO:0008270 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GeneTree:ENSGT00700000104545 EMBL:CABZ01070143
EMBL:CU693447 IPI:IPI00993890 Ensembl:ENSDART00000126063
ArrayExpress:E7FD29 Bgee:E7FD29 Uniprot:E7FD29
Length = 1149
Score = 228 (85.3 bits), Expect = 1.6e-37, Sum P(4) = 1.6e-37
Identities = 49/120 (40%), Positives = 71/120 (59%)
Query: 885 KQKKGPDGLLLDIVAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTP 944
K K D + D+ PL +V W RV+LDEA SIKN + Q + A LRA+ RW ++GTP
Sbjct: 695 KPSKDSDHVASDLP--PLLRVAWARVILDEAHSIKNPKVQTSMAVCKLRARSRWAVTGTP 752
Query: 945 IQNAIDDLYSYFRFLRYDPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGE 1004
IQN + D+YS +FLR PF YK + K + +G ++L + + ++LRRTK +
Sbjct: 753 IQNNLLDMYSLLKFLRCSPFDEYKLW----KAQVDNGSKRGGERLNILTRALLLRRTKDQ 808
Score = 164 (62.8 bits), Expect = 1.6e-37, Sum P(4) = 1.6e-37
Identities = 31/65 (47%), Positives = 45/65 (69%)
Query: 779 GTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCELAKFDVVITTYSIVSM 838
GTL++CP S++ W +E+ +V S L+V +YHG +R + LA+ DVVITTYS+VS
Sbjct: 626 GTLIICPASLVHHWKKEIDKRVKSS-RLTVYLYHGPNRQRSASVLAEHDVVITTYSLVSK 684
Query: 839 EVPKQ 843
E+P Q
Sbjct: 685 EIPVQ 689
Score = 162 (62.1 bits), Expect = 1.6e-37, Sum P(4) = 1.6e-37
Identities = 62/213 (29%), Positives = 96/213 (45%)
Query: 514 STLNKKELDGVKEDMEAEIKTRSMASHLLKLSP-ESIQSNSSDCK---SHVDDEPDICIL 569
S +N L E ++ ++K A L L+ ES + ++ + +H P C
Sbjct: 410 SVVNVSALPDKGERLKRQVKDLEEALESLSLTATESQDKDRAEAEHKTAHSFSNPFSCPG 469
Query: 570 EDISQPARSNQSLVLGKTLSMNRSACSNHSVALGKPVVTSQHSSYSDYPG-YPGVPLTGL 628
I P L + S+ + +S G V Q ++ Y G L +
Sbjct: 470 GTILLPTAPAAMLKESSSASLGLNLSQGYSQMFG--AVNPQSQAF--YGGRMTENRLLAV 525
Query: 629 GGMKSKASDERLILQVAMQGISQPNAEASAPDGVLAVPLLRHQRIALSWMVQKETSSLHC 688
++A D L +++ N EA P G L V LL HQ+ AL+W++ +ET C
Sbjct: 526 RNATTEAIDH---LHDSLESCPTENTEAHDPKG-LKVELLPHQKRALTWLLWRETQK-PC 580
Query: 689 SGGILADDQGLGKTISTIALILKERPPSFRTED 721
GGILADD GLGKT++ IALIL ++ + E+
Sbjct: 581 -GGILADDMGLGKTLTMIALILSQKKKDEKLEE 612
Score = 41 (19.5 bits), Expect = 1.6e-37, Sum P(4) = 1.6e-37
Identities = 19/66 (28%), Positives = 31/66 (46%)
Query: 94 EISGAESGGLGDSSSQLEP-TEQKCSPLQTCSASFSDWFNQNSGTCCPESVGISQFETPG 152
E S ++GG S S+ P ++K S Q+ S N SG+ +Q ++P
Sbjct: 255 EQSPRKTGGSAQSPSKSSPGLDKKTSNKQSTS-------NSKSGS------DKTQSQSPS 301
Query: 153 CSTASS 158
CST+ +
Sbjct: 302 CSTSQN 307
Score = 41 (19.5 bits), Expect = 1.6e-25, Sum P(3) = 1.6e-25
Identities = 8/27 (29%), Positives = 17/27 (62%)
Query: 20 ADDQGLSIDMDTLLGILEEEKQPDRVK 46
ADD GL + + IL ++K+ ++++
Sbjct: 585 ADDMGLGKTLTMIALILSQKKKDEKLE 611
>WB|WBGene00020742 [details] [associations]
symbol:T23H2.3 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003677 GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00700000104545 KO:K15173 EMBL:FO081319
RefSeq:NP_001032980.2 ProteinModelPortal:P91494 PaxDb:P91494
EnsemblMetazoa:T23H2.3 GeneID:172347 KEGG:cel:CELE_T23H2.3
UCSC:T23H2.3 CTD:172347 WormBase:T23H2.3 HOGENOM:HOG000017261
InParanoid:P91494 OMA:GHNYTSI NextBio:875145 Uniprot:P91494
Length = 1001
Score = 215 (80.7 bits), Expect = 6.1e-37, Sum P(4) = 6.1e-37
Identities = 48/108 (44%), Positives = 64/108 (59%)
Query: 901 PLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLR 960
PLA+V W RV+LDEA +IKN +Q ++A L + RWCLSGTPI N + DLYS RFLR
Sbjct: 544 PLARVAWSRVILDEAHAIKNRLSQCSKAVCRLSSFSRWCLSGTPIHNNLWDLYSLVRFLR 603
Query: 961 YDPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGEDCLL 1008
F K + I +P+ ++ + K +MLRRTK + C L
Sbjct: 604 IPLFGDRKFWAESI-MPMKTGMAD---RVNLLTKNLMLRRTKDQQCAL 647
Score = 157 (60.3 bits), Expect = 6.1e-37, Sum P(4) = 6.1e-37
Identities = 74/259 (28%), Positives = 121/259 (46%)
Query: 503 GSRQYFPYAQPSTLNKKELDGVK-EDMEAEIKTRSMASHLLKLSPESIQSNSSDCKSHVD 561
GS + P P EL + +++EA K + + LLK S ++ N + K VD
Sbjct: 215 GSPEASPQPSPPKNTASELQKLSIKELEAN-KDKKLK--LLKFS-SNLPDNGARVKLQVD 270
Query: 562 DEPDICILEDISQPARSN--QSLVLGKTLSMNRSACSNHSVALGKPVVTSQHSSYSDYPG 619
+ I E+I + + ++V+ KT ++ + +A P+ ++ D G
Sbjct: 271 E-----ITEEIERRIINGVTDTMVVDKTTAIPPPPQPKNLIA---PI-PQDFAAMLDKNG 321
Query: 620 YPGVP--LTGLGGMKSKASDERLILQVAMQGISQPNAEAS---APDGVLAVPLLRHQRIA 674
+ +T +K +RL+ Q+A + P AE PDG+L V L+ HQ+
Sbjct: 322 RKVMSGRMTEQKILKVNKISDRLMQQLADATHTIP-AETDLTDTPDGLL-VELMPHQKAG 379
Query: 675 LSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKERPPS-FRTED-DNKRQLETLNL 732
L W+V +E H SGGILADD GLGKT+S ++LI+ ++ R E DN E +
Sbjct: 380 LRWLVWREGQP-H-SGGILADDMGLGKTLSMLSLIVHQKAARRARKESGDNAADKEKRRV 437
Query: 733 DEEDNGIQVNGLDLVKQES 751
+E+ NG ++ S
Sbjct: 438 AKEEGLYPSNGTLIIAPAS 456
Score = 146 (56.5 bits), Expect = 6.1e-37, Sum P(4) = 6.1e-37
Identities = 27/67 (40%), Positives = 47/67 (70%)
Query: 776 PAAGTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTK--DPCELAKFDVVITTY 833
P+ GTL++ P S++ QW E+ ++ S LSV ++HG+ + + +P ELA++DVVITTY
Sbjct: 445 PSNGTLIIAPASLIHQWEAEINRRLESD-LLSVFMFHGTKKQRQIEPKELARYDVVITTY 503
Query: 834 SIVSMEV 840
++ + E+
Sbjct: 504 TLAANEL 510
Score = 69 (29.3 bits), Expect = 6.1e-37, Sum P(4) = 6.1e-37
Identities = 32/122 (26%), Positives = 53/122 (43%)
Query: 199 VDASPSSITENFDERYGHYG-----ASIGNRLGSSVP----EGNLCTYVDVPYTDAEVSS 249
+D+S SS E+ ER+ AS+ + S P + +L + YT S
Sbjct: 11 IDSSDSSEDEDRKERHSSSSEVDETASMRSTDSSEPPRTIIDASLNSMASTVYTSTPNSK 70
Query: 250 HNVASTDSTICHGSEIISDDDYYSAMPCYINTGDTIFGDPSSFNFQHLLSSEETATKPKD 309
+++ T S+ +GS S DD+Y + +I D F P + + L S+E K +
Sbjct: 71 QSISRTGSSTTYGSSKCSTDDHYRSRS-FI---DNSFEKPVTPITKKLQESDEPRAKQQL 126
Query: 310 EE 311
E
Sbjct: 127 RE 128
Score = 52 (23.4 bits), Expect = 1.2e-23, Sum P(3) = 1.2e-23
Identities = 12/44 (27%), Positives = 21/44 (47%)
Query: 8 WLCGEVSAADEFADDQGLSIDMDTLLGILEEEKQPDRVKSSPGD 51
W G+ + ADD GL + ++L ++ +K R + GD
Sbjct: 385 WREGQPHSGGILADDMGLGKTL-SMLSLIVHQKAARRARKESGD 427
Score = 39 (18.8 bits), Expect = 2.0e-14, Sum P(3) = 2.0e-14
Identities = 7/18 (38%), Positives = 12/18 (66%)
Query: 890 PDGLLLDIVAGPLAKVGW 907
PDGLL++++ A + W
Sbjct: 365 PDGLLVELMPHQKAGLRW 382
>UNIPROTKB|D4A1K7 [details] [associations]
symbol:Ttf2 "Protein Ttf2" species:10116 "Rattus
norvegicus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR002464
InterPro:IPR010666 Pfam:PF00176 Pfam:PF06839 PROSITE:PS00690
RGD:1309145 GO:GO:0005524 GO:GO:0003677 GO:GO:0008270
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
IPI:IPI00782268 Ensembl:ENSRNOT00000056142 ArrayExpress:D4A1K7
Uniprot:D4A1K7
Length = 950
Score = 219 (82.2 bits), Expect = 1.1e-35, Sum P(3) = 1.1e-35
Identities = 44/112 (39%), Positives = 72/112 (64%)
Query: 893 LLLDIVAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDL 952
L ++ ++ PL +V W R++LDEA ++KN R Q + A L+A+ RW ++GTPIQN + D+
Sbjct: 697 LSVEGISAPLLQVVWARIILDEAHNVKNPRVQTSIAVCKLQAQARWAVTGTPIQNNLLDM 756
Query: 953 YSYFRFLRYDPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGE 1004
YS +FLR PF + S+ K + +KG ++L + K+++LRRTK +
Sbjct: 757 YSLMKFLRCSPFDEF----SLWKSQVDNGSMKGGERLSILTKSLLLRRTKDQ 804
Score = 157 (60.3 bits), Expect = 1.1e-35, Sum P(3) = 1.1e-35
Identities = 43/107 (40%), Positives = 61/107 (57%)
Query: 633 SKASDERLILQVAMQGISQPNAEASAPDGVLAVPLLRHQRIALSWMVQKETSSLHCSGGI 692
S+A DE L +++ A A P G L VPLL HQ+ AL+W++ +E+ GGI
Sbjct: 520 SEAIDE---LHRSLESCPGKTAVAEDPAG-LKVPLLLHQKQALAWLLWRESQKPQ--GGI 573
Query: 693 LADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGI 739
LADD GLGKT++ IALIL ++ E D R L + L + D+ +
Sbjct: 574 LADDMGLGKTLTMIALILTKKNQQKSKEKD--RSLPVMWLSKNDSSV 618
Score = 152 (58.6 bits), Expect = 1.1e-35, Sum P(3) = 1.1e-35
Identities = 26/65 (40%), Positives = 43/65 (66%)
Query: 777 AAGTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCELAKFDVVITTYSIV 836
+ GTL+VCP S++ W E+ +V S L + +YHG +R + L+ +D+VITTYS++
Sbjct: 621 STGTLIVCPASLIHHWKNEIEKRVNSN-KLRIYLYHGPNRIQHAKVLSTYDIVITTYSLL 679
Query: 837 SMEVP 841
+ E+P
Sbjct: 680 AKEIP 684
>UNIPROTKB|E2RGF7 [details] [associations]
symbol:TTF2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR002464 InterPro:IPR010666 Pfam:PF00176 Pfam:PF00271
Pfam:PF06839 PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0003677 GO:GO:0008270 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GeneTree:ENSGT00700000104545 OMA:WCGSIPW EMBL:AAEX03011013
Ensembl:ENSCAFT00000015640 Uniprot:E2RGF7
Length = 1150
Score = 211 (79.3 bits), Expect = 6.0e-35, Sum P(4) = 6.0e-35
Identities = 42/109 (38%), Positives = 66/109 (60%)
Query: 896 DIVAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSY 955
DI PL ++ W R++LDEA ++N R Q + A L+A RW ++GTPIQN + D+YS
Sbjct: 706 DIAKTPLLRIVWARIILDEAHCVRNPRVQTSMAVCKLQAHARWAVTGTPIQNTLLDMYSL 765
Query: 956 FRFLRYDPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGE 1004
+FLR PF ++ + K + KG ++L + K+++LRRTK +
Sbjct: 766 LKFLRCSPFDDFQLW----KSQVDNGSKKGGERLSILTKSLLLRRTKDQ 810
Score = 169 (64.5 bits), Expect = 6.0e-35, Sum P(4) = 6.0e-35
Identities = 44/102 (43%), Positives = 60/102 (58%)
Query: 633 SKASDERLILQVAMQGISQPNAEASAPDGVLAVPLLRHQRIALSWMVQKETSSLHCSGGI 692
SKA DE L +++ A A P G L VPLL HQ+ AL+W++ +E+ H GGI
Sbjct: 524 SKAIDE---LHESLESRPGETAVAEDPAG-LKVPLLLHQKQALAWLLWRESQKPH--GGI 577
Query: 693 LADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDE 734
LADD GLGKT++ IALIL ++ E+D L L+ D+
Sbjct: 578 LADDMGLGKTLTMIALILTQKNREKTKEEDKNVALTWLSKDD 619
Score = 151 (58.2 bits), Expect = 6.0e-35, Sum P(4) = 6.0e-35
Identities = 26/65 (40%), Positives = 45/65 (69%)
Query: 779 GTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCELAKFDVVITTYSIVSM 838
GTL++CP S++ W E+ +V+S +L V +YHG +R + L+ +D+VITTY++++
Sbjct: 627 GTLIICPASLIHHWKNEVMKRVSSN-TLRVCLYHGPNRDQRAKVLSTYDIVITTYNLLAK 685
Query: 839 EVPKQ 843
E+P Q
Sbjct: 686 EIPTQ 690
Score = 56 (24.8 bits), Expect = 6.6e-24, Sum P(3) = 6.6e-24
Identities = 16/58 (27%), Positives = 29/58 (50%)
Query: 7 AWLCGEVSAADE---FADDQGLSIDMDTLLGILEEEKQPDRVKSSPGDLSLRNLSQDE 61
AWL S ADD GL + T++ ++ +K ++ K +++L LS+D+
Sbjct: 563 AWLLWRESQKPHGGILADDMGLGKTL-TMIALILTQKNREKTKEEDKNVALTWLSKDD 619
Score = 40 (19.1 bits), Expect = 6.0e-35, Sum P(4) = 6.0e-35
Identities = 35/142 (24%), Positives = 55/142 (38%)
Query: 438 PFK--DSGQSFIGLSPSLLSQNQVVHAKEEHEDLILESKRARFCQEICDGSSSRSPIDGR 495
PFK D Q PSL Q K E E+ +++ K+ + D R P
Sbjct: 124 PFKVLDKNQE-----PSLWKQ----FTKGEGEEKMVDKKQKEKGDVLLDQKEERKPEPNC 174
Query: 496 HLSLNLNGS-----RQYFPYAQP----STLNK--KELDGVKEDMEAEIKTRSMASHLLKL 544
+ NL+ +Q P Q + L KE G+ + +E+K++ L+
Sbjct: 175 CMKKNLSSGLEVKKKQPAPQEQQRGEKTELQHEAKENKGMHKRNLSEVKSKQCHVEELRK 234
Query: 545 SPESIQSNSSDCKSHVD--DEP 564
S+Q S+ HV+ EP
Sbjct: 235 PSGSLQVKSNIESHHVEKKSEP 256
>MGI|MGI:1921294 [details] [associations]
symbol:Ttf2 "transcription termination factor, RNA
polymerase II" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005681
"spliceosomal complex" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006353 "DNA-dependent transcription,
termination" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR002464 InterPro:IPR010666 Pfam:PF00176 Pfam:PF00271
Pfam:PF06839 PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490
MGI:MGI:1921294 GO:GO:0005524 GO:GO:0005737 GO:GO:0006355
GO:GO:0008380 GO:GO:0003677 GO:GO:0008270 GO:GO:0006397
GO:GO:0005681 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 GO:GO:0006353 EMBL:AL669937
EMBL:AL669872 GeneTree:ENSGT00700000104545 KO:K15173 CTD:8458
HOGENOM:HOG000154708 HOVERGEN:HBG053179 OMA:WCGSIPW
OrthoDB:EOG4GMTWH EMBL:BC087733 EMBL:BC096625 IPI:IPI00112371
RefSeq:NP_001013044.2 UniGene:Mm.270961 ProteinModelPortal:Q5NC05
SMR:Q5NC05 IntAct:Q5NC05 STRING:Q5NC05 PhosphoSite:Q5NC05
PRIDE:Q5NC05 Ensembl:ENSMUST00000076941 GeneID:74044 KEGG:mmu:74044
UCSC:uc008qrb.2 NextBio:339618 Bgee:Q5NC05 Genevestigator:Q5NC05
GermOnline:ENSMUSG00000033222 Uniprot:Q5NC05
Length = 1138
Score = 218 (81.8 bits), Expect = 2.7e-34, Sum P(4) = 2.7e-34
Identities = 47/123 (38%), Positives = 75/123 (60%)
Query: 884 SKQKKGPDGLLLDI--VAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLS 941
+KQ+ G L + + PL +V W R++LDEA ++KN R Q + A L+A+ RW ++
Sbjct: 682 TKQEGEVPGANLSVEGTSAPLLQVVWARIILDEAHNVKNPRVQTSIAVCKLQAQARWAVT 741
Query: 942 GTPIQNAIDDLYSYFRFLRYDPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRT 1001
GTPIQN + D+YS +FLR PF + S+ K + +KG ++L + K+++LRRT
Sbjct: 742 GTPIQNNLLDMYSLMKFLRCSPFDEF----SLWKSQVDNGSMKGGERLSILTKSLLLRRT 797
Query: 1002 KGE 1004
K +
Sbjct: 798 KDQ 800
Score = 159 (61.0 bits), Expect = 2.7e-34, Sum P(4) = 2.7e-34
Identities = 27/65 (41%), Positives = 46/65 (70%)
Query: 777 AAGTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCELAKFDVVITTYSIV 836
++GTL+VCP S++ W E+ +VTS L + +YHG +R++ L+ +D+VITTYS++
Sbjct: 617 SSGTLIVCPASLIHHWKNEVEKRVTSN-RLRIYLYHGPNRSRHAKVLSTYDIVITTYSLL 675
Query: 837 SMEVP 841
+ E+P
Sbjct: 676 AKEIP 680
Score = 147 (56.8 bits), Expect = 2.7e-34, Sum P(4) = 2.7e-34
Identities = 64/223 (28%), Positives = 102/223 (45%)
Query: 514 STLNKKELDGVKEDMEAEIKTRSMASHLLKLSPESIQSNSSDCKSHVDDEPDICILEDIS 573
+ +N + L E + +I+ A L LSPE Q C + EP+ +I+
Sbjct: 405 AAVNIQALPDKGEKLLKQIQALEDALSALALSPE--QGTKEKCSAQ---EPE---QSNIT 456
Query: 574 QPARSNQSLVLGKTLSMNR-SACSNHSVALGKPVVTSQHSSYSDYPGYPGVP-LTGLGGM 631
+ A + LV + L S+ + G+ S S G+ L + +
Sbjct: 457 KAAAAPLHLVPPQPLPRPLIQPASSLGLKAGRQETPEGASQCSG--GHMNQHHLYNVWKI 514
Query: 632 KSKASDERLILQVAMQGISQPNAEASAPDGVLAVPLLRHQRIALSWMVQKETSSLHCSGG 691
S+A DE L +++ A A P G L VPLL HQ+ AL+W++ +E+ GG
Sbjct: 515 TSEAIDE---LHRSLKSCPGETAVAEDPAG-LKVPLLLHQKQALAWLLWRESQKPQ--GG 568
Query: 692 ILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDE 734
ILADD GLGKT++ IALIL ++ E + + L+ ++
Sbjct: 569 ILADDMGLGKTLTMIALILTKKNQQKSKEKERSEPVTWLSKND 611
Score = 40 (19.1 bits), Expect = 2.7e-34, Sum P(4) = 2.7e-34
Identities = 18/57 (31%), Positives = 25/57 (43%)
Query: 38 EEKQPDRVKSSPGDLSLRNLSQDELVQDVGSHSNLQLQ------SGF--KGDMRDIA 86
E+ + D V S PG L + + D + HS+ +Q SG KGD D A
Sbjct: 331 EDSEDDGVSSRPGSPLLFDSTVDSQKKGSLQHSDQSVQRQMPAASGVSKKGDSSDPA 387
>UNIPROTKB|Q9UNY4 [details] [associations]
symbol:TTF2 "Transcription termination factor 2"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005681 "spliceosomal complex"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0006369 "termination of RNA
polymerase II transcription" evidence=TAS] [GO:0008023
"transcription elongation factor complex" evidence=TAS] [GO:0008094
"DNA-dependent ATPase activity" evidence=TAS] [GO:0006353
"DNA-dependent transcription, termination" evidence=TAS]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR002464 InterPro:IPR010666 Pfam:PF00176 Pfam:PF00271
Pfam:PF06839 PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005737 GO:GO:0006355 GO:GO:0008380
GO:GO:0003677 GO:GO:0008270 GO:GO:0006397 GO:GO:0005681
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 GO:GO:0008094 GO:GO:0008023 GO:GO:0006369
CleanEx:HS_TTF2 EMBL:AL445231 EMBL:AL391476 KO:K15173 EMBL:AF073771
EMBL:AF080255 EMBL:AK291017 EMBL:BC030058 IPI:IPI00290812
IPI:IPI00640904 RefSeq:NP_003585.3 UniGene:Hs.486818
ProteinModelPortal:Q9UNY4 SMR:Q9UNY4 IntAct:Q9UNY4 MINT:MINT-272557
STRING:Q9UNY4 PhosphoSite:Q9UNY4 DMDM:73920148 PaxDb:Q9UNY4
PRIDE:Q9UNY4 Ensembl:ENST00000369466 Ensembl:ENST00000427271
GeneID:8458 KEGG:hsa:8458 UCSC:uc001egx.1 UCSC:uc001egy.3 CTD:8458
GeneCards:GC01P117602 H-InvDB:HIX0000933 HGNC:HGNC:12398
HPA:HPA005776 MIM:604718 neXtProt:NX_Q9UNY4 PharmGKB:PA37063
HOGENOM:HOG000154708 HOVERGEN:HBG053179 InParanoid:Q9UNY4
OMA:WCGSIPW OrthoDB:EOG4GMTWH PhylomeDB:Q9UNY4 ChiTaRS:TTF2
GenomeRNAi:8458 NextBio:31654 Bgee:Q9UNY4 Genevestigator:Q9UNY4
GermOnline:ENSG00000116830 Uniprot:Q9UNY4
Length = 1162
Score = 208 (78.3 bits), Expect = 9.0e-34, Sum P(4) = 9.0e-34
Identities = 45/123 (36%), Positives = 73/123 (59%)
Query: 884 SKQKKGPDGLLLDI--VAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLS 941
+KQ+ G L++ + PL ++ W R++LDEA ++KN R Q + A L+A RW ++
Sbjct: 706 NKQEAEIPGANLNVEGTSTPLLRIAWARIILDEAHNVKNPRVQTSIAVCKLQACARWAVT 765
Query: 942 GTPIQNAIDDLYSYFRFLRYDPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRT 1001
GTPIQN + D+YS +FLR PF + + S + KG ++L + K+++LRRT
Sbjct: 766 GTPIQNNLLDMYSLLKFLRCSPFDEFNLWRSQV----DNGSKKGGERLSILTKSLLLRRT 821
Query: 1002 KGE 1004
K +
Sbjct: 822 KDQ 824
Score = 151 (58.2 bits), Expect = 9.0e-34, Sum P(4) = 9.0e-34
Identities = 27/63 (42%), Positives = 41/63 (65%)
Query: 779 GTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCELAKFDVVITTYSIVSM 838
GTL++CP S++ W E+ +V S L V +YHG +R L+ +D+VITTYS+V+
Sbjct: 643 GTLIICPASLIHHWKNEVEKRVNSN-KLRVYLYHGPNRDSRARVLSTYDIVITTYSLVAK 701
Query: 839 EVP 841
E+P
Sbjct: 702 EIP 704
Score = 149 (57.5 bits), Expect = 9.0e-34, Sum P(4) = 9.0e-34
Identities = 35/79 (44%), Positives = 49/79 (62%)
Query: 656 ASAPDGVLAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKERPP 715
A P G L VPLL HQ+ AL+W++ +E+ GGILADD GLGKT++ IALIL ++
Sbjct: 560 AEDPAG-LKVPLLLHQKQALAWLLWRESQKPQ--GGILADDMGLGKTLTMIALILTQKNQ 616
Query: 716 SFRTEDDNKRQLETLNLDE 734
+ E + L L+ D+
Sbjct: 617 EKKEEKEKSTALTWLSKDD 635
Score = 57 (25.1 bits), Expect = 1.1e-23, Sum P(3) = 1.1e-23
Identities = 19/69 (27%), Positives = 32/69 (46%)
Query: 7 AWLCGEVSAADE---FADDQGLSIDMDTLLGILEEEKQPDRVKSSPGDLSLRNLSQDELV 63
AWL S + ADD GL + T++ ++ +K ++ + +L LS+D+
Sbjct: 579 AWLLWRESQKPQGGILADDMGLGKTL-TMIALILTQKNQEKKEEKEKSTALTWLSKDDSC 637
Query: 64 QDVGSHSNL 72
D SH L
Sbjct: 638 -DFTSHGTL 645
Score = 52 (23.4 bits), Expect = 9.0e-34, Sum P(4) = 9.0e-34
Identities = 26/116 (22%), Positives = 52/116 (44%)
Query: 11 GEVSAADEFADDQGLSIDMDTLLGILEEEKQPDRVKS--SPGDLSLRNLSQ-DELVQDVG 67
GE AD+ ++G D L +E+K P+ ++ S G + + S E Q+ G
Sbjct: 146 GEEKKADKKQREKG-----DQLFDQKKEQK-PEMMEKDLSSGLVPKKKQSVVQEKKQEEG 199
Query: 68 SHSNLQLQSG--FKGDMRDIATYPLYGLEISGAESGGLGDSSSQLEPTEQKCSPLQ 121
+ + ++G K D +I + G E++ + SS + + +++ PL+
Sbjct: 200 AEIQCEAETGGTHKRDFSEIKSQQCQGNELTRPSASSQEKSSGKSQDVQRESEPLR 255
Score = 42 (19.8 bits), Expect = 9.6e-33, Sum P(4) = 9.6e-33
Identities = 31/128 (24%), Positives = 50/128 (39%)
Query: 533 KTRSMASHLLKLSPESIQSNSSDCKSHVDDEPDI----CILEDISQPARSNQSLVLGKTL 588
K +S+ + IQ + +H D +I C ++++P+ S+Q GK+
Sbjct: 186 KKQSVVQEKKQEEGAEIQCEAETGGTHKRDFSEIKSQQCQGNELTRPSASSQEKSSGKSQ 245
Query: 589 SMNR-SACSNHSVALGKPVVTSQHSSYSDYPGYPGVPL----TGLGGMKSKASDERLILQ 643
+ R S V P H+S S P G PL T ++KA D I Q
Sbjct: 246 DVQRESEPLREKVTQLLPQNVHSHNSISK-P-QKGGPLNKEYTNWEAKETKAKDGPSI-Q 302
Query: 644 VAMQGISQ 651
+ + Q
Sbjct: 303 ATQKSLPQ 310
>UNIPROTKB|F1SAY2 [details] [associations]
symbol:TTF2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0008270 "zinc ion binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR010666
Pfam:PF00176 Pfam:PF00271 Pfam:PF06839 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003677 GO:GO:0008270
GO:GO:0004386 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00700000104545 OMA:WCGSIPW EMBL:CU468873
EMBL:AEMK01166609 EMBL:CU207228 Ensembl:ENSSSCT00000007376
Uniprot:F1SAY2
Length = 1169
Score = 220 (82.5 bits), Expect = 5.2e-33, Sum P(4) = 5.2e-33
Identities = 47/124 (37%), Positives = 76/124 (61%)
Query: 884 SKQKKGP-DGLLLDI--VAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCL 940
+K+++G G L + A PL ++ W R++LDEA ++KN R Q + A L+A+ RW +
Sbjct: 711 TKEQEGAVPGAELSVQGTASPLLRIVWARIILDEAHTVKNPRVQTSMAVCKLQAQARWAV 770
Query: 941 SGTPIQNAIDDLYSYFRFLRYDPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRR 1000
+GTPIQN + D+YS +FLR PF + S+ K + KG ++L + K+++LRR
Sbjct: 771 TGTPIQNNLLDMYSLLKFLRCSPFDEF----SLWKSQVDNGSKKGGERLNILTKSLLLRR 826
Query: 1001 TKGE 1004
TK +
Sbjct: 827 TKDQ 830
Score = 143 (55.4 bits), Expect = 5.2e-33, Sum P(4) = 5.2e-33
Identities = 24/62 (38%), Positives = 43/62 (69%)
Query: 780 TLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCELAKFDVVITTYSIVSME 839
TL++CP S++ W E++ +V + L V +YHG +R ++ L+ +D+VITTYS+++ E
Sbjct: 650 TLIICPASLIHHWKNEVQKRVCNN-ELRVYLYHGPNRDQNAKVLSMYDIVITTYSLLAKE 708
Query: 840 VP 841
+P
Sbjct: 709 IP 710
Score = 137 (53.3 bits), Expect = 5.2e-33, Sum P(4) = 5.2e-33
Identities = 39/92 (42%), Positives = 53/92 (57%)
Query: 633 SKASDERLILQVAMQGISQPNAEASAPDGVLAVPLLRHQRIALSWMVQKETSSLHCSGGI 692
S+A DE L +++ A A P G L VPLL HQ+ AL+W++ +E+ GGI
Sbjct: 544 SEAIDE---LHRSLESRPDETAVAEDPAG-LKVPLLLHQKQALAWLLWRESQKP--PGGI 597
Query: 693 L--ADDQGLGKTISTIALILKERPPSFRTEDD 722
L ADD GLGKT++ IALIL ++ E D
Sbjct: 598 LFPADDMGLGKTLTMIALILTQKNQEKNKEKD 629
Score = 52 (23.4 bits), Expect = 5.2e-33, Sum P(4) = 5.2e-33
Identities = 13/46 (28%), Positives = 24/46 (52%)
Query: 519 KELDGVKEDMEAEIKTRSMASHLLKLSPESIQSNSSDCKSHVDDEP 564
KEL+G+ + E+K+R + L+ P S ++ + D + EP
Sbjct: 210 KELEGMHQRKVFEMKSRQVHKDELREPPVSQETANGDSYIRKESEP 255
Score = 41 (19.5 bits), Expect = 1.8e-22, Sum P(3) = 1.8e-22
Identities = 14/53 (26%), Positives = 25/53 (47%)
Query: 20 ADDQGLSIDMDTLLGILEEEKQPDRVKSSPGDLSLRNLSQDELVQDVGSHSNL 72
ADD GL + T++ ++ +K ++ K S LS+ + + SH L
Sbjct: 601 ADDMGLGKTL-TMIALILTQKNQEKNKEKDKTTSSTWLSKTDS-SEFTSHRTL 651
>POMBASE|SPBC23E6.02 [details] [associations]
symbol:rrp2 "ATP-dependent DNA helicase (predicted)"
species:4896 "Schizosaccharomyces pombe" [GO:0000724 "double-strand
break repair via homologous recombination" evidence=IGI]
[GO:0000790 "nuclear chromatin" evidence=ISO] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=ISM] [GO:0004842 "ubiquitin-protein ligase
activity" evidence=ISM] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0006281 "DNA repair"
evidence=ISO] [GO:0006338 "chromatin remodeling" evidence=ISS]
[GO:0008270 "zinc ion binding" evidence=ISM] [GO:0016567 "protein
ubiquitination" evidence=ISM] [GO:0045005 "maintenance of fidelity
involved in DNA-dependent DNA replication" evidence=IMP]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50089 PROSITE:PS51194
SMART:SM00184 SMART:SM00490 PomBase:SPBC23E6.02 Prosite:PS00518
GO:GO:0005524 GO:GO:0046872 GO:GO:0003677 EMBL:CU329671
GO:GO:0008270 GO:GO:0006338 GO:GO:0000790 Gene3D:3.30.40.10
InterPro:IPR013083 GO:GO:0004003 GO:GO:0000724 GO:GO:0004842
InterPro:IPR017907 HSSP:Q97XQ5 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0016585 GO:GO:0045005
OrthoDB:EOG4NZZ2M PIR:T39936 RefSeq:NP_596602.1
ProteinModelPortal:O60177 STRING:O60177 EnsemblFungi:SPBC23E6.02.1
GeneID:2540464 KEGG:spo:SPBC23E6.02 OMA:ACCHSYL NextBio:20801591
Uniprot:O60177
Length = 1040
Score = 248 (92.4 bits), Expect = 7.5e-33, Sum P(4) = 7.5e-33
Identities = 46/104 (44%), Positives = 66/104 (63%)
Query: 901 PLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLR 960
P + W+RV+LDEAQ+IKN T AR C L + RWCLSGTP+QN +++ YS +FLR
Sbjct: 527 PFFEAEWYRVILDEAQTIKNRNTLAARGCCLLESTYRWCLSGTPMQNGVEEFYSLIKFLR 586
Query: 961 YDPFAVYKSFCSMIKVPISKN--PVKGYKKLQAVLKTIMLRRTK 1002
P++ + SF +P+S N K+ + +LK ++LRRTK
Sbjct: 587 IKPYSDWSSFSKDFTIPLSSNINTSAPMKRFRGLLKAVLLRRTK 630
Score = 136 (52.9 bits), Expect = 7.5e-33, Sum P(4) = 7.5e-33
Identities = 31/82 (37%), Positives = 46/82 (56%)
Query: 638 ERLILQVAMQGISQPNAEASAPDGVLAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQ 697
E L + Q ++ P P G++ L+ HQ+ L W+ + E SS GGILADD
Sbjct: 362 EELFKDLDEQLVNDPTIREGTPAGLIPT-LMEHQKEGLMWLKRLEESSK--KGGILADDM 418
Query: 698 GLGKTISTIALILKERPPSFRT 719
GLGKT+ +AL++ RPP ++
Sbjct: 419 GLGKTVQALALLVT-RPPESKS 439
Score = 124 (48.7 bits), Expect = 7.5e-33, Sum P(4) = 7.5e-33
Identities = 22/61 (36%), Positives = 39/61 (63%)
Query: 780 TLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCE-LAKFDVVITTYSIVSM 838
TL++ P S+L+QW E+ K+ +V ++HGSS+ E L +D+V+TTY++++
Sbjct: 443 TLIITPVSLLQQWHNEILTKIAPSHRPTVYIHHGSSKKHKIAEQLMSYDIVLTTYNVIAY 502
Query: 839 E 839
E
Sbjct: 503 E 503
Score = 42 (19.8 bits), Expect = 3.1e-23, Sum P(4) = 3.1e-23
Identities = 9/20 (45%), Positives = 15/20 (75%)
Query: 718 RTEDDNKRQLETL--NLDEE 735
+ +DD ++QLE L +LDE+
Sbjct: 352 KVQDDQQQQLEELFKDLDEQ 371
Score = 38 (18.4 bits), Expect = 7.5e-33, Sum P(4) = 7.5e-33
Identities = 9/23 (39%), Positives = 12/23 (52%)
Query: 347 LDAKRQCEDSKNGLPIYGNSLSN 369
LD K +KN P Y +S S+
Sbjct: 20 LDDKHNIGFNKNNTPDYSSSASS 42
>POMBASE|SPAC17A2.12 [details] [associations]
symbol:rrp1 "ATP-dependent DNA helicase (predicted)"
species:4896 "Schizosaccharomyces pombe" [GO:0000724 "double-strand
break repair via homologous recombination" evidence=IGI]
[GO:0000790 "nuclear chromatin" evidence=ISO] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=ISM] [GO:0004842 "ubiquitin-protein ligase
activity" evidence=ISM] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0005829 "cytosol" evidence=IDA] [GO:0006281 "DNA
repair" evidence=ISO] [GO:0006338 "chromatin remodeling"
evidence=ISS] [GO:0008270 "zinc ion binding" evidence=ISM]
[GO:0016567 "protein ubiquitination" evidence=ISM] [GO:0035861
"site of double-strand break" evidence=IDA] [GO:0045005
"maintenance of fidelity involved in DNA-dependent DNA replication"
evidence=IMP] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50089
PROSITE:PS51194 SMART:SM00184 SMART:SM00490 PomBase:SPAC17A2.12
Prosite:PS00518 GO:GO:0005829 GO:GO:0005524 EMBL:CU329670
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 GO:GO:0006338
GO:GO:0000790 Gene3D:3.30.40.10 InterPro:IPR013083 GO:GO:0004003
GO:GO:0000724 GO:GO:0004842 HSSP:Q97XQ5 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0016585
GO:GO:0035861 GO:GO:0045005 OrthoDB:EOG4NZZ2M PIR:T37813
RefSeq:NP_594246.1 ProteinModelPortal:O13762 STRING:O13762
EnsemblFungi:SPAC17A2.12.1 GeneID:2542440 KEGG:spo:SPAC17A2.12
OMA:RIRDSEN NextBio:20803497 Uniprot:O13762
Length = 897
Score = 226 (84.6 bits), Expect = 1.9e-32, Sum P(4) = 1.9e-32
Identities = 47/105 (44%), Positives = 65/105 (61%)
Query: 902 LAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRY 961
L + W+R+VLDEA +I+N T A+ C L AK RWCLSGTPIQN ID+ YS +FLR
Sbjct: 386 LLETSWYRIVLDEAHTIRNRDTLAAKCCVKLDAKYRWCLSGTPIQNHIDEFYSLLKFLRI 445
Query: 962 DPFAVYKSFCSMIKVPISK---NPVKG-YKKLQAVLKTIMLRRTK 1002
P+ V+ F I P+ + V+ K+L+ +L + + RRTK
Sbjct: 446 KPYCVWSLFAKDISRPLKSYRADIVEAALKRLRILLASTVFRRTK 490
Score = 142 (55.0 bits), Expect = 1.9e-32, Sum P(4) = 1.9e-32
Identities = 30/64 (46%), Positives = 45/64 (70%)
Query: 781 LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTK-DPCELAKFDVVITTYSIVSME 839
L+V ++L QWAEEL KV LSV ++HGS++ D EL+++DVV+TTYS+++ E
Sbjct: 304 LIVVSVALLHQWAEELSTKVHPSKKLSVYIHHGSTKKNLDSYELSQYDVVLTTYSMLAYE 363
Query: 840 VPKQ 843
+ KQ
Sbjct: 364 M-KQ 366
Score = 121 (47.7 bits), Expect = 1.9e-32, Sum P(4) = 1.9e-32
Identities = 28/51 (54%), Positives = 34/51 (66%)
Query: 663 LAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKER 713
L V LL HQ +WM E SS C GG++ADD GLGKTI TIAL+L ++
Sbjct: 246 LLVSLLPHQVEGHAWMESMEQSS-KC-GGVMADDMGLGKTIQTIALLLTQK 294
Score = 51 (23.0 bits), Expect = 1.9e-32, Sum P(4) = 1.9e-32
Identities = 14/41 (34%), Positives = 20/41 (48%)
Query: 283 DTIFGDPSSFNFQHLLSSEETATKPKDEEGEFTTEIACSSS 323
D++ P FQ L + EE A + +DE + A SSS
Sbjct: 2 DSLSAYPPQSTFQQLQNDEELARRLQDEWNSSSPSSAPSSS 42
Score = 43 (20.2 bits), Expect = 7.7e-14, Sum P(2) = 7.7e-14
Identities = 18/73 (24%), Positives = 33/73 (45%)
Query: 20 ADDQGLSIDMDTLLGILEEEKQPDRVKSSPGDLSLRNLSQ--DELVQDVGSHSNLQLQSG 77
ADD GL + T+ +L ++ Q K++ +S+ L Q +EL V L +
Sbjct: 275 ADDMGLGKTIQTIALLLTQKSQDPLRKTNLIVVSVALLHQWAEELSTKVHPSKKLSVYIH 334
Query: 78 FKGDMRDIATYPL 90
+++ +Y L
Sbjct: 335 HGSTKKNLDSYEL 347
>UNIPROTKB|I3L7V5 [details] [associations]
symbol:TTF2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0008270 "zinc ion binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR010666
Pfam:PF00176 Pfam:PF00271 Pfam:PF06839 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003677 GO:GO:0008270
GO:GO:0004386 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00700000104545 EMBL:CU468873 EMBL:AEMK01166609
EMBL:CU207228 Ensembl:ENSSSCT00000031433 Uniprot:I3L7V5
Length = 1147
Score = 220 (82.5 bits), Expect = 2.0e-32, Sum P(3) = 2.0e-32
Identities = 47/124 (37%), Positives = 76/124 (61%)
Query: 884 SKQKKGP-DGLLLDI--VAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCL 940
+K+++G G L + A PL ++ W R++LDEA ++KN R Q + A L+A+ RW +
Sbjct: 689 TKEQEGAVPGAELSVQGTASPLLRIVWARIILDEAHTVKNPRVQTSMAVCKLQAQARWAV 748
Query: 941 SGTPIQNAIDDLYSYFRFLRYDPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRR 1000
+GTPIQN + D+YS +FLR PF + S+ K + KG ++L + K+++LRR
Sbjct: 749 TGTPIQNNLLDMYSLLKFLRCSPFDEF----SLWKSQVDNGSKKGGERLNILTKSLLLRR 804
Query: 1001 TKGE 1004
TK +
Sbjct: 805 TKDQ 808
Score = 143 (55.4 bits), Expect = 2.0e-32, Sum P(3) = 2.0e-32
Identities = 24/62 (38%), Positives = 43/62 (69%)
Query: 780 TLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCELAKFDVVITTYSIVSME 839
TL++CP S++ W E++ +V + L V +YHG +R ++ L+ +D+VITTYS+++ E
Sbjct: 628 TLIICPASLIHHWKNEVQKRVCNN-ELRVYLYHGPNRDQNAKVLSMYDIVITTYSLLAKE 686
Query: 840 VP 841
+P
Sbjct: 687 IP 688
Score = 137 (53.3 bits), Expect = 2.0e-32, Sum P(3) = 2.0e-32
Identities = 39/92 (42%), Positives = 53/92 (57%)
Query: 633 SKASDERLILQVAMQGISQPNAEASAPDGVLAVPLLRHQRIALSWMVQKETSSLHCSGGI 692
S+A DE L +++ A A P G L VPLL HQ+ AL+W++ +E+ GGI
Sbjct: 522 SEAIDE---LHRSLESRPDETAVAEDPAG-LKVPLLLHQKQALAWLLWRESQKP--PGGI 575
Query: 693 L--ADDQGLGKTISTIALILKERPPSFRTEDD 722
L ADD GLGKT++ IALIL ++ E D
Sbjct: 576 LFPADDMGLGKTLTMIALILTQKNQEKNKEKD 607
Score = 41 (19.5 bits), Expect = 1.6e-22, Sum P(3) = 1.6e-22
Identities = 14/53 (26%), Positives = 25/53 (47%)
Query: 20 ADDQGLSIDMDTLLGILEEEKQPDRVKSSPGDLSLRNLSQDELVQDVGSHSNL 72
ADD GL + T++ ++ +K ++ K S LS+ + + SH L
Sbjct: 579 ADDMGLGKTL-TMIALILTQKNQEKNKEKDKTTSSTWLSKTDS-SEFTSHRTL 629
>UNIPROTKB|F1N2E8 [details] [associations]
symbol:TTF2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR002464 InterPro:IPR010666 Pfam:PF00176 Pfam:PF00271
Pfam:PF06839 PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0003677
GO:GO:0008270 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 GeneTree:ENSGT00700000104545 OMA:WCGSIPW
EMBL:DAAA02007409 IPI:IPI00710264 UniGene:Bt.10162 PRIDE:F1N2E8
Ensembl:ENSBTAT00000033711 Uniprot:F1N2E8
Length = 1163
Score = 211 (79.3 bits), Expect = 3.0e-32, Sum P(4) = 3.0e-32
Identities = 42/106 (39%), Positives = 67/106 (63%)
Query: 899 AGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRF 958
+ PL +V W R++LDEA ++KN R Q + A L+A+ RW ++GTPIQN + D+YS +F
Sbjct: 724 SSPLLRVVWARLILDEAHNVKNPRVQTSMAVCKLQAQARWAVTGTPIQNNLLDMYSLLKF 783
Query: 959 LRYDPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGE 1004
LR PF +K + K + KG ++L + ++++LRRTK +
Sbjct: 784 LRCSPFDEFKLW----KSQVDNGSKKGGERLNILTRSLLLRRTKDQ 825
Score = 146 (56.5 bits), Expect = 3.0e-32, Sum P(4) = 3.0e-32
Identities = 26/63 (41%), Positives = 41/63 (65%)
Query: 779 GTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCELAKFDVVITTYSIVSM 838
GTL++CP S++ W E+ V S L V +YHG +R + L+ +D+VITTYS+++
Sbjct: 644 GTLIICPASLIHHWKNEVEKHV-SHNRLRVCLYHGPNRNQHAKVLSTYDIVITTYSLLAK 702
Query: 839 EVP 841
E+P
Sbjct: 703 EIP 705
Score = 138 (53.6 bits), Expect = 3.0e-32, Sum P(4) = 3.0e-32
Identities = 36/88 (40%), Positives = 52/88 (59%)
Query: 633 SKASDERLILQVAMQGISQPNAEASAPDGVLAVPLLRHQRIALSWMVQKETSSLHCSGGI 692
S+A DE L +++ A A P G L + LL HQ+ AL+W++ +E+ GGI
Sbjct: 544 SEAIDE---LHRSLESCPGETAMAEDPAG-LKISLLPHQKQALAWLLWRESQKPR--GGI 597
Query: 693 LADDQGLGKTISTIALILKERPPSFRTE 720
LADD GLGKT++ IALIL ++ + E
Sbjct: 598 LADDMGLGKTLTMIALILTQKKSKEKDE 625
Score = 50 (22.7 bits), Expect = 3.0e-32, Sum P(4) = 3.0e-32
Identities = 12/41 (29%), Positives = 25/41 (60%)
Query: 519 KELDGVKEDMEAEIKTRSMASHLLKLSPESIQSNSSDCKSH 559
KE++G+ + E+K++ + ++L+ P + Q S D +SH
Sbjct: 210 KEIEGMHKRNLLEMKSKQVRGNVLR-EPSAFQVKS-DSESH 248
Score = 40 (19.1 bits), Expect = 1.0e-21, Sum P(3) = 1.0e-21
Identities = 18/69 (26%), Positives = 32/69 (46%)
Query: 7 AWLCGEVSAADE---FADDQGLSIDMDTLLGILEEEKQPDRVKSSPGDLSLRNLSQDELV 63
AWL S ADD GL + + IL ++K ++ +++ +L LS+++
Sbjct: 583 AWLLWRESQKPRGGILADDMGLGKTLTMIALILTQKKSKEKDETT----ALTWLSKNDS- 637
Query: 64 QDVGSHSNL 72
+ SH L
Sbjct: 638 SEFTSHGTL 646
>ASPGD|ASPL0000065871 [details] [associations]
symbol:AN7538 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003677 EMBL:AACD01000129 EMBL:BN001304 GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
OrthoDB:EOG44XNQX RefSeq:XP_680807.1 ProteinModelPortal:Q5AVZ2
EnsemblFungi:CADANIAT00000644 GeneID:2869681 KEGG:ani:AN7538.2
HOGENOM:HOG000215811 OMA:FMKRRTK Uniprot:Q5AVZ2
Length = 1132
Score = 215 (80.7 bits), Expect = 1.3e-31, Sum P(3) = 1.3e-31
Identities = 48/109 (44%), Positives = 67/109 (61%)
Query: 896 DIVAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSY 955
D AG + V W+R++LDEA +IKN + +A + L A+ RWCLSGTP+QN +D+L S
Sbjct: 487 DKKAG-IFSVYWYRIILDEAHTIKNRNAKATQAAYALDAEYRWCLSGTPMQNNLDELQSL 545
Query: 956 FRFLRYDPFAVYKSFCSMIKVPISKNPVKGY--KKLQAVLKTIMLRRTK 1002
RFLR P+ ++ I P++ N G ++LQ VLK M RRTK
Sbjct: 546 IRFLRIKPYNDLANWKDQITRPLA-NGRGGLAIERLQVVLKAFMKRRTK 593
Score = 147 (56.8 bits), Expect = 1.3e-31, Sum P(3) = 1.3e-31
Identities = 35/89 (39%), Positives = 50/89 (56%)
Query: 751 SDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTSVLRQWAEELRNKVTSKGSLSVLV 810
SD+ R P + +S KG + TLVV P ++++QW E++ KV L VLV
Sbjct: 393 SDHDRK-PEDTDEESAESRNLPKGL-SKSTLVVAPLALIKQWESEIKTKVEPSHRLRVLV 450
Query: 811 YHGSSRTKDPCELAKFDVVITTYSIVSME 839
YHG++R K L +DVVITTY ++ E
Sbjct: 451 YHGNARAKATDSLDDYDVVITTYGTLTSE 479
Score = 130 (50.8 bits), Expect = 1.3e-31, Sum P(3) = 1.3e-31
Identities = 37/89 (41%), Positives = 49/89 (55%)
Query: 650 SQPNAEASAPDGV---LAVPLLRHQRIALSWMVQKETSSLHC---------SGGILADDQ 697
++ ++E DGV L V LL HQR ++WM KE SL GGILADD
Sbjct: 305 TEEDSEDEDDDGVVEGLRVQLLPHQRQGVNWMCAKEIGSLKPRKEEKGVLPKGGILADDM 364
Query: 698 GLGKTISTIALILKERPPSFRTEDDNKRQ 726
GLGKT+ IAL+L + P +D ++RQ
Sbjct: 365 GLGKTVQAIALMLTNQKP----KDGSRRQ 389
Score = 43 (20.2 bits), Expect = 7.2e-12, Sum P(3) = 7.2e-12
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 514 STLNKKELDGVKEDMEAEIKTRSMASHLLKL 544
STL L +K+ E+EIKT+ SH L++
Sbjct: 419 STLVVAPLALIKQ-WESEIKTKVEPSHRLRV 448
Score = 42 (19.8 bits), Expect = 7.2e-12, Sum P(3) = 7.2e-12
Identities = 13/53 (24%), Positives = 23/53 (43%)
Query: 20 ADDQGLSIDMDTLLGILEEEKQPDRVKSSPGDLSLRNLSQDELVQDVGSHSNL 72
ADD GL + + +L +K D + P LS + ++ ++ NL
Sbjct: 361 ADDMGLGKTVQAIALMLTNQKPKDGSRRQPA-LSDHDRKPEDTDEESAESRNL 412
>UNIPROTKB|F1MLM2 [details] [associations]
symbol:HLTF "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0016887 "ATPase activity" evidence=IEA] [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR014905 Pfam:PF00176 Pfam:PF00271
Pfam:PF08797 PROSITE:PS50089 PROSITE:PS51194 SMART:SM00184
SMART:SM00490 SMART:SM00910 Prosite:PS00518 GO:GO:0005524
GO:GO:0005634 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
GO:GO:0006357 GO:GO:0016887 Gene3D:3.30.40.10 InterPro:IPR013083
GO:GO:0004386 InterPro:IPR017907 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 OMA:SNWIDQF GeneTree:ENSGT00700000104586
EMBL:DAAA02002705 EMBL:DAAA02002706 IPI:IPI00883352
Ensembl:ENSBTAT00000034508 Uniprot:F1MLM2
Length = 1009
Score = 221 (82.9 bits), Expect = 2.2e-30, Sum P(5) = 2.2e-30
Identities = 43/102 (42%), Positives = 64/102 (62%)
Query: 901 PLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLR 960
PL + W RV+LDE +I+N Q +A L A+RRW L+GTPIQN++ DL+S FL+
Sbjct: 545 PLHSIRWLRVILDEGHAIRNPNAQQTKAVLDLEAERRWVLTGTPIQNSLKDLWSLLSFLK 604
Query: 961 YDPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTK 1002
PF + + I+ P++ G ++LQ+++K I LRRTK
Sbjct: 605 LKPFVDREWWHRTIQRPVTMGDEAGLRRLQSLIKNITLRRTK 646
Score = 144 (55.7 bits), Expect = 2.2e-30, Sum P(5) = 2.2e-30
Identities = 28/83 (33%), Positives = 49/83 (59%)
Query: 755 RVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGS 814
+++ G+SA + + +P TL++CP SVL W ++ + S L+ VY+G
Sbjct: 454 KMLKRGASAVESSKKTDVEDKPRT-TLIICPLSVLSNWMDQFGQHIKSDVHLNFYVYYGP 512
Query: 815 SRTKDPCELAKFDVVITTYSIVS 837
R +DP L+K D+V+TTY+I++
Sbjct: 513 DRVRDPTLLSKQDIVLTTYNILT 535
Score = 92 (37.4 bits), Expect = 2.2e-30, Sum P(5) = 2.2e-30
Identities = 32/86 (37%), Positives = 41/86 (47%)
Query: 690 GGILADDQGLGKTISTIALILKE--RPPSFRTEDDNKRQLET-LNLDEED-----NGIQV 741
GGILADD GLGKT++ IA+IL S E K QL+ N+ +E N
Sbjct: 289 GGILADDMGLGKTLTAIAVILTNFHDGKSLPVERIKKNQLKKECNVYDESMELGGNNTSE 348
Query: 742 NGLDLVKQESDYCRVVPNGSSAKSFN 767
L+K E C P+ S K+ N
Sbjct: 349 KAAGLIK-EGSRCSGEPSISDVKTQN 373
Score = 69 (29.3 bits), Expect = 2.2e-30, Sum P(5) = 2.2e-30
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 659 PDGVLAVPLLRHQRIALSWMVQKETS 684
P + PLL HQ+ AL+WMV +E S
Sbjct: 232 PAEAIETPLLPHQKQALAWMVSRENS 257
Score = 45 (20.9 bits), Expect = 2.3e-23, Sum P(3) = 2.3e-23
Identities = 17/66 (25%), Positives = 26/66 (39%)
Query: 336 GSMLKVPAIDYLDAKRQCEDSKNGLPIYGNSLSNITLGDGKRSAQPCTYSHSHSSRTKQM 395
G L V I K++C + + GN+ S G K ++ C+ S S Q
Sbjct: 315 GKSLPVERIKKNQLKKECNVYDESMELGGNNTSEKAAGLIKEGSR-CSGEPSISDVKTQN 373
Query: 396 VFAKDE 401
+ K E
Sbjct: 374 KYPKSE 379
Score = 39 (18.8 bits), Expect = 2.2e-30, Sum P(5) = 2.2e-30
Identities = 8/20 (40%), Positives = 13/20 (65%)
Query: 518 KKELDGVKEDMEAEIKTRSM 537
K E D + ED++ + KT+ M
Sbjct: 211 KTEFDKLFEDLKEDDKTQEM 230
>ASPGD|ASPL0000030172 [details] [associations]
symbol:AN5483 species:162425 "Emericella nidulans"
[GO:0045005 "maintenance of fidelity involved in DNA-dependent DNA
replication" evidence=IEA] [GO:0000724 "double-strand break repair
via homologous recombination" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50089 PROSITE:PS51194
SMART:SM00184 SMART:SM00490 GO:GO:0005524 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 EMBL:BN001305 Gene3D:3.30.40.10
InterPro:IPR013083 GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:AACD01000094 OrthoDB:EOG4NZZ2M
RefSeq:XP_663087.1 ProteinModelPortal:Q5B1U7
EnsemblFungi:CADANIAT00003605 GeneID:2871773 KEGG:ani:AN5483.2
HOGENOM:HOG000216663 OMA:LETIRPD Uniprot:Q5B1U7
Length = 1184
Score = 221 (82.9 bits), Expect = 4.1e-30, Sum P(4) = 4.1e-30
Identities = 46/107 (42%), Positives = 64/107 (59%)
Query: 900 GPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFL 959
GP +K W+RV++DEAQ IKN TQ A AC L RWC+SGTP+ N +++L+S +FL
Sbjct: 615 GPTSK--WYRVIIDEAQCIKNRATQSAIACCRLNTTYRWCMSGTPMMNNVEELHSLLKFL 672
Query: 960 RYDPFAVYKSFCSMIKVPISKN----PVKGYKKLQAVLKTIMLRRTK 1002
R P+A F P+ N K +L+ +LK ++LRRTK
Sbjct: 673 RIRPYANLDRFKRDFSAPLKTNNKHLQEKAMTQLRILLKAVLLRRTK 719
Score = 141 (54.7 bits), Expect = 4.1e-30, Sum P(4) = 4.1e-30
Identities = 35/71 (49%), Positives = 43/71 (60%)
Query: 651 QPNAEASAPD-----GVLAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTIST 705
+P+A+ SA D L PLL HQ++ L+WM KE GGILADD GLGKTI
Sbjct: 450 RPDADLSAKDREGTPAALKYPLLDHQKLGLAWMRSKEECDQ--KGGILADDMGLGKTIQA 507
Query: 706 IALILKERPPS 716
IAL++ RP S
Sbjct: 508 IALMVS-RPSS 517
Score = 109 (43.4 bits), Expect = 4.1e-30, Sum P(4) = 4.1e-30
Identities = 18/63 (28%), Positives = 37/63 (58%)
Query: 780 TLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCELAKFDVVITTYSIVSME 839
TL++ P ++++QW E+ ++ L V + HG +L K+DVV+TT+ +++ E
Sbjct: 524 TLIIAPVALMQQWKREIEKMLSPGHRLQVYILHGDKGRTSFSDLKKYDVVLTTFGMLASE 583
Query: 840 VPK 842
+ +
Sbjct: 584 LKR 586
Score = 53 (23.7 bits), Expect = 4.1e-30, Sum P(4) = 4.1e-30
Identities = 37/120 (30%), Positives = 50/120 (41%)
Query: 484 DGSSSRSPIDGRHLS-LNLNGSRQYFPYAQPSTLNKKELDGVKEDMEAEIKTRSMASHLL 542
DG S +D L L L+G Q Q ++ +KE E E + A HL+
Sbjct: 169 DGLDSEFDVDDDILGILGLDG--QDMRALQEE--QRRAEQWLKERKEQERRDAEFARHLM 224
Query: 543 KLSPESIQSNSSDCKSHVDDEPDICILEDISQPARSNQSLVLGKT---LSMNRSACSNHS 599
SP S Q+ S ++ P L I Q + SN SL LG LS S +NH+
Sbjct: 225 SASP-SAQTLSYISRAE-PPTPTRENLPSIPQFSSSN-SLFLGTRPAGLSAAPSLNANHA 281
>TAIR|locus:2162504 [details] [associations]
symbol:RAD5 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA;ISS] [GO:0004386 "helicase activity"
evidence=IEA;ISS] [GO:0005524 "ATP binding" evidence=IEA;ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008270 "zinc ion binding"
evidence=IEA;ISS] [GO:0016818 "hydrolase activity, acting on acid
anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0000724 "double-strand break repair via homologous
recombination" evidence=IMP;IDA] [GO:0045003 "double-strand break
repair via synthesis-dependent strand annealing" evidence=IDA]
[GO:0006261 "DNA-dependent DNA replication" evidence=RCA]
[GO:0009294 "DNA mediated transformation" evidence=IMP]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR014905 Pfam:PF00176 Pfam:PF00271 Pfam:PF08797
PROSITE:PS00690 PROSITE:PS50089 PROSITE:PS51194 SMART:SM00184
SMART:SM00490 SMART:SM00910 Prosite:PS00518 GO:GO:0005524
GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 GO:GO:0016568 Gene3D:3.30.40.10
InterPro:IPR013083 GO:GO:0004386 EMBL:AB006699 InterPro:IPR017907
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0009294 GO:GO:0045003 KO:K15505 EMBL:AK228695 IPI:IPI00523984
RefSeq:NP_197667.1 UniGene:At.31042 ProteinModelPortal:Q9FNI6
SMR:Q9FNI6 STRING:Q9FNI6 PaxDb:Q9FNI6 PRIDE:Q9FNI6
EnsemblPlants:AT5G22750.1 GeneID:832338 KEGG:ath:AT5G22750
GeneFarm:4640 TAIR:At5g22750 HOGENOM:HOG000029930 InParanoid:Q9FNI6
OMA:KPIMLRR PhylomeDB:Q9FNI6 ProtClustDB:CLSN2686824
Genevestigator:Q9FNI6 GermOnline:AT5G22750 Uniprot:Q9FNI6
Length = 1029
Score = 265 (98.3 bits), Expect = 5.1e-30, Sum P(4) = 5.1e-30
Identities = 49/98 (50%), Positives = 70/98 (71%)
Query: 905 VGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPF 964
V WFR+VLDEA +IKN ++Q++ A L A RRWCL+GTPIQN ++DLYS RFLR +P+
Sbjct: 565 VRWFRIVLDEAHTIKNSKSQISLAAAALVADRRWCLTGTPIQNNLEDLYSLLRFLRIEPW 624
Query: 965 AVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTK 1002
+ + +++ P + +G K +Q++LK IMLRRTK
Sbjct: 625 GTWAWWNKLVQKPFEEGDERGLKLVQSILKPIMLRRTK 662
Score = 172 (65.6 bits), Expect = 5.1e-30, Sum P(4) = 5.1e-30
Identities = 54/154 (35%), Positives = 77/154 (50%)
Query: 690 GGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGIQVNGLDLVKQ 749
GGILAD GLGKT+ TI+L+L S++ N E D I + DL
Sbjct: 414 GGILADAMGLGKTVMTISLLLAH---SWKAASTG---FLCPNY-EGDKVISSSVDDLTSP 466
Query: 750 ESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTSVLRQWAEELRNKVTSKGSLSVL 809
+ + G + +EQ G L+VCP ++L QW E+ GSLSV
Sbjct: 467 PVKATKFL--GFDKR---LLEQKSVLQNGGNLIVCPMTLLGQWKTEIEMHA-KPGSLSVY 520
Query: 810 VYHGSSRTKDPCELAKFDVVITTYSIVSMEVPKQ 843
V++G SR KD L++ DVVITTY +++ E ++
Sbjct: 521 VHYGQSRPKDAKLLSQSDVVITTYGVLTSEFSQE 554
Score = 41 (19.5 bits), Expect = 5.1e-30, Sum P(4) = 5.1e-30
Identities = 13/35 (37%), Positives = 16/35 (45%)
Query: 648 GISQPNAEASAPDGVLAVPLLRHQRIALSWMVQKE 682
G S E P +L L +Q+ AL WM Q E
Sbjct: 330 GDSSGLKEMETPHTLLC-ELRPYQKQALHWMTQLE 363
Score = 41 (19.5 bits), Expect = 6.8e-07, Sum P(4) = 6.8e-07
Identities = 5/18 (27%), Positives = 14/18 (77%)
Query: 964 FAVYKSFCSMIKVPISKN 981
F+ + +F ++++P+S+N
Sbjct: 885 FSQWTAFLDLLQIPLSRN 902
Score = 39 (18.8 bits), Expect = 5.1e-30, Sum P(4) = 5.1e-30
Identities = 13/44 (29%), Positives = 17/44 (38%)
Query: 286 FGDPSSFNFQHLLSSEETATKPKDEEGEFTTE---IACSS-SGL 325
FGD S H + E + EE E + CS +GL
Sbjct: 78 FGDSGSVGANHRVEEENESVNGGGEESVSGNEWWFVGCSELAGL 121
Score = 38 (18.4 bits), Expect = 1.0e-29, Sum P(4) = 1.0e-29
Identities = 14/41 (34%), Positives = 17/41 (41%)
Query: 400 DEGNDDLFPCWST--VSDSVEPIDEAVGRNSSYHDGCNSFP 438
DE L PCW ++D E + V NS D FP
Sbjct: 369 DEAATMLHPCWEAYCLADKRELV---VYLNSFTGDATIHFP 406
Score = 37 (18.1 bits), Expect = 5.4e-16, Sum P(4) = 5.4e-16
Identities = 9/22 (40%), Positives = 12/22 (54%)
Query: 587 TLSMNRSACSNHSVALGKPVVT 608
TL M R ++ LGK V+T
Sbjct: 408 TLQMARGGILADAMGLGKTVMT 429
>POMBASE|SPBC582.10c [details] [associations]
symbol:SPBC582.10c "ATP-dependent DNA helicase Rhp16b
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0000113
"nucleotide-excision repair factor 4 complex" evidence=ISO]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0005829 "cytosol"
evidence=IDA] [GO:0006289 "nucleotide-excision repair"
evidence=ISO] [GO:0008094 "DNA-dependent ATPase activity"
evidence=ISO] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490
PomBase:SPBC582.10c GO:GO:0005829 GO:GO:0005524 GO:GO:0003677
EMBL:CU329671 GO:GO:0000113 GO:GO:0004386 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006289
GO:GO:0008094 EMBL:AB027965 PIR:T37973 RefSeq:NP_595178.1
ProteinModelPortal:Q10332 EnsemblFungi:SPBC582.10c.1 GeneID:2540907
KEGG:spo:SPBC582.10c HOGENOM:HOG000241058 OMA:QACNHPQ
OrthoDB:EOG44XNQX NextBio:20802022 Uniprot:Q10332
Length = 830
Score = 220 (82.5 bits), Expect = 6.4e-30, Sum P(3) = 6.4e-30
Identities = 42/97 (43%), Positives = 63/97 (64%)
Query: 907 WFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAV 966
W+R++LDEA +IKN ++ A AC L+ RWCL+GTP+QN +D+LYS +FL +PF
Sbjct: 378 WWRIILDEAHTIKNKSSKSALACCALQGINRWCLTGTPLQNNVDELYSLVKFLHINPFND 437
Query: 967 YKSFCSMIKVPISKNPVK-GYKKLQAVLKTIMLRRTK 1002
+ I +P+ + +K+L+ +L IMLRRTK
Sbjct: 438 QSVWKDQISLPLCQGEENLVFKRLRMLLSVIMLRRTK 474
Score = 125 (49.1 bits), Expect = 6.4e-30, Sum P(3) = 6.4e-30
Identities = 29/52 (55%), Positives = 33/52 (63%)
Query: 665 VPLLRHQRIALSWMVQKET-SSLHCSGGILADDQGLGKTISTIALILKERPP 715
+ LL HQ L+W+ +ET S SGGILADD GLGKTI IALIL P
Sbjct: 231 IRLLDHQVQGLTWLKSRETVSKSSASGGILADDMGLGKTIQMIALILSHPLP 282
Score = 125 (49.1 bits), Expect = 6.4e-30, Sum P(3) = 6.4e-30
Identities = 29/60 (48%), Positives = 41/60 (68%)
Query: 780 TLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCELAKFDVVITTYSIVSME 839
TLVV P S+++QW E++ K SK L+ +VYHG+SR K + ++DVVITTY I+ E
Sbjct: 291 TLVVAPLSLIKQWESEVQTK--SK--LTAIVYHGASRYKLLKVIHEYDVVITTYQILVSE 346
>TAIR|locus:2158357 [details] [associations]
symbol:AT5G43530 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA;ISS] [GO:0004386 "helicase activity"
evidence=IEA;ISS] [GO:0005524 "ATP binding" evidence=IEA;ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008270 "zinc ion binding"
evidence=IEA;ISS] [GO:0016818 "hydrolase activity, acting on acid
anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0009941 "chloroplast envelope" evidence=IDA] InterPro:IPR001841
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR014905
Pfam:PF00176 Pfam:PF00271 Pfam:PF08797 PROSITE:PS00690
PROSITE:PS50089 PROSITE:PS51194 SMART:SM00184 SMART:SM00490
SMART:SM00910 Prosite:PS00518 GO:GO:0005524 GO:GO:0005634
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 GO:GO:0006281 GO:GO:0009941 GO:GO:0016568
Gene3D:3.30.40.10 InterPro:IPR013083 GO:GO:0004386
InterPro:IPR017907 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 EMBL:AB016875 KO:K15505 OMA:PCAHRMC
HOGENOM:HOG000029930 ProtClustDB:CLSN2686824 IPI:IPI00529351
RefSeq:NP_199166.1 UniGene:At.55338 ProteinModelPortal:Q9FIY7
SMR:Q9FIY7 PaxDb:Q9FIY7 PRIDE:Q9FIY7 EnsemblPlants:AT5G43530.1
GeneID:834373 KEGG:ath:AT5G43530 GeneFarm:4653 TAIR:At5g43530
InParanoid:Q9FIY7 PhylomeDB:Q9FIY7 Genevestigator:Q9FIY7
GermOnline:AT5G43530 Uniprot:Q9FIY7
Length = 1277
Score = 237 (88.5 bits), Expect = 7.8e-30, Sum P(5) = 7.8e-30
Identities = 42/99 (42%), Positives = 68/99 (68%)
Query: 904 KVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDP 963
++ W+R+VLDEA +IK+ +TQ A+A + L + RWCL+GTP+QN ++DLYS FL +P
Sbjct: 813 RIDWYRIVLDEAHTIKSWKTQAAKATFELSSHCRWCLTGTPLQNKLEDLYSLLCFLHVEP 872
Query: 964 FAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTK 1002
+ + + +I+ P +G K ++A+L+ +MLRRTK
Sbjct: 873 WCNWAWWSKLIQKPYENGDPRGLKLIKAILRPLMLRRTK 911
Score = 143 (55.4 bits), Expect = 7.8e-30, Sum P(5) = 7.8e-30
Identities = 29/67 (43%), Positives = 44/67 (65%)
Query: 771 QAKGRPAAGTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCELAKFDVVI 830
+AKG GTL++CP ++L QW +EL + ++SVLVY+G RT D +A DVV+
Sbjct: 738 KAKG----GTLIICPMALLSQWKDELETH-SKPDTVSVLVYYGGDRTHDAKAIASHDVVL 792
Query: 831 TTYSIVS 837
TTY +++
Sbjct: 793 TTYGVLT 799
Score = 92 (37.4 bits), Expect = 7.8e-30, Sum P(5) = 7.8e-30
Identities = 29/81 (35%), Positives = 44/81 (54%)
Query: 679 VQKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNG 738
+Q T++ GGILAD GLGKT+ TIALIL RP E+++ + +N D+ N
Sbjct: 671 IQFPTATQMARGGILADAMGLGKTVMTIALILA-RPGRGNPENEDVLVAD-VNADKR-NR 727
Query: 739 IQVN-GLDLVKQESDYCRVVP 758
+++ L VK + + P
Sbjct: 728 KEIHMALTTVKAKGGTLIICP 748
Score = 53 (23.7 bits), Expect = 7.8e-30, Sum P(5) = 7.8e-30
Identities = 37/140 (26%), Positives = 59/140 (42%)
Query: 449 LSPSLLSQNQVVHAKEEHEDLILESKRARFCQEI-----CDGSSSRSPIDGRHLSLNLNG 503
+ P LL +N VV AKEE E++I++S + + CD + +D NL
Sbjct: 142 VEPELLVENLVV-AKEE-EEMIVDSIEDSVVEIVSTASGCDCNVKVEVVDPELCVDNLVV 199
Query: 504 SRQYFPYAQPSTLNKKELDGVKEDMEA-EIKTRSMASHLLKLSPESIQSNSSDCKSHVDD 562
++ A + E D E ++K + KL +S+ N + K V
Sbjct: 200 VKEEEMIADSIAESVVETVSRGLDYECVDVKVKEEPDLGTKLEEDSVFPNVLEKKDEV-- 257
Query: 563 EPDICILEDISQPARSNQSL 582
I +LED QP+ N+ L
Sbjct: 258 ---IKVLED--QPSEINKKL 272
Score = 40 (19.1 bits), Expect = 7.8e-30, Sum P(5) = 7.8e-30
Identities = 11/28 (39%), Positives = 14/28 (50%)
Query: 655 EASAPDGVLAVPLLRHQRIALSWMVQKE 682
E AP L L +Q+ AL WM + E
Sbjct: 605 EMEAPS-TLTCNLRPYQKQALYWMSESE 631
>ZFIN|ZDB-GENE-030131-3306 [details] [associations]
symbol:hltf "helicase-like transcription factor"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0016818 "hydrolase activity,
acting on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR014905 Pfam:PF00176 Pfam:PF00271
Pfam:PF08797 PROSITE:PS50089 PROSITE:PS51194 SMART:SM00184
SMART:SM00490 SMART:SM00910 Prosite:PS00518
ZFIN:ZDB-GENE-030131-3306 GO:GO:0005524 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR013083 GO:GO:0004386
InterPro:IPR017907 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 CTD:6596 HOVERGEN:HBG079192 KO:K15711 OMA:SNWIDQF
GeneTree:ENSGT00700000104586 HOGENOM:HOG000172619 OrthoDB:EOG47SSD6
EMBL:CR788256 IPI:IPI00500566 RefSeq:XP_693071.2 UniGene:Dr.105912
Ensembl:ENSDART00000099350 Ensembl:ENSDART00000132050 GeneID:564651
KEGG:dre:564651 NextBio:20885486 Uniprot:B0V118
Length = 942
Score = 218 (81.8 bits), Expect = 8.2e-30, Sum P(4) = 8.2e-30
Identities = 45/104 (43%), Positives = 65/104 (62%)
Query: 899 AGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRF 958
+ PL V W RVVLDE ++N ++A L+++RRW LSGTPIQN++ DL+ F
Sbjct: 483 SSPLHNVKWLRVVLDEGHVVRNPNALQSKAVLELQSERRWILSGTPIQNSLKDLFMLLSF 542
Query: 959 LRYDPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTK 1002
L+ PF V + + +I+ P++ G K LQA++K I LRRTK
Sbjct: 543 LKLKPFDVKEWWSRIIQRPVTMGDRVGLKNLQALVKGITLRRTK 586
Score = 141 (54.7 bits), Expect = 8.2e-30, Sum P(4) = 8.2e-30
Identities = 29/91 (31%), Positives = 51/91 (56%)
Query: 750 ESDYCRVVPNGSSAKSFNFVEQ-AKGRPAAGTLVVCPTSVLRQWAEELRNKVTSKGSLSV 808
E +VVP+ K + + + G A TL+VCP SVL W ++ + + ++ V
Sbjct: 387 ECSSSQVVPSKKCVKKSSVPSEISAGSVARATLIVCPLSVLSNWLDQFEQHIRTDVTVKV 446
Query: 809 LVYHGSSRTKDPCELAKFDVVITTYSIVSME 839
+Y+GS R + L++ DVV+TTY+++S +
Sbjct: 447 YLYYGSERNRSVSLLSEQDVVLTTYNVLSSD 477
Score = 87 (35.7 bits), Expect = 8.2e-30, Sum P(4) = 8.2e-30
Identities = 17/21 (80%), Positives = 20/21 (95%)
Query: 690 GGILADDQGLGKTISTIALIL 710
GGILADD GLGKT++TIALI+
Sbjct: 275 GGILADDMGLGKTLTTIALIV 295
Score = 70 (29.7 bits), Expect = 8.2e-30, Sum P(4) = 8.2e-30
Identities = 16/60 (26%), Positives = 26/60 (43%)
Query: 626 TGLGGMKSKASDERLILQVAMQGISQPNAEASAPDGVLAVPLLRHQRIALSWMVQKETSS 685
T L + A + + + + + P + PLL HQ+ ALSWM +E S+
Sbjct: 185 TKLSAIPLSAEELKNAFDKLFDDLMEDKTKEMEPAEAVCTPLLSHQKQALSWMSSRENSN 244
Score = 53 (23.7 bits), Expect = 4.5e-28, Sum P(4) = 4.5e-28
Identities = 19/80 (23%), Positives = 30/80 (37%)
Query: 67 GSHSNLQLQSGFKGDMRDIATYPLYGLEISGAES----GGLGDSSSQLEPTEQKCSPLQT 122
G S L G ++ PL E+ A + D + ++EP E C+PL +
Sbjct: 169 GGSSQTSLGRDLLGLSTKLSAIPLSAEELKNAFDKLFDDLMEDKTKEMEPAEAVCTPLLS 228
Query: 123 CSASFSDWFN--QNSGTCCP 140
W + +NS P
Sbjct: 229 HQKQALSWMSSRENSNDLPP 248
>FB|FBgn0002542 [details] [associations]
symbol:lds "lodestar" species:7227 "Drosophila melanogaster"
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0005634 "nucleus"
evidence=NAS;IDA] [GO:0006353 "DNA-dependent transcription,
termination" evidence=IDA] [GO:0008094 "DNA-dependent ATPase
activity" evidence=ISS;IDA] [GO:0006369 "termination of RNA
polymerase II transcription" evidence=ISS] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0007143 "female
meiosis" evidence=IMP] [GO:0034454 "microtubule anchoring at
centrosome" evidence=IMP] [GO:0007283 "spermatogenesis"
evidence=IMP] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490
EMBL:AE014297 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0003677 GO:GO:0007283 GO:GO:0007143 GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0034454 GO:GO:0008094 GO:GO:0006353
GeneTree:ENSGT00700000104545 EMBL:X62629 PIR:A40580
RefSeq:NP_524850.2 UniGene:Dm.20310 ProteinModelPortal:P34739
SMR:P34739 DIP:DIP-20026N IntAct:P34739 MINT:MINT-947822
STRING:P34739 PaxDb:P34739 EnsemblMetazoa:FBtr0081758 GeneID:45894
KEGG:dme:Dmel_CG2684 CTD:45894 FlyBase:FBgn0002542
InParanoid:P34739 KO:K15173 OMA:QRHALAW OrthoDB:EOG47M0D4
PhylomeDB:P34739 GenomeRNAi:45894 NextBio:838462 Bgee:P34739
GermOnline:CG2684 Uniprot:P34739
Length = 1061
Score = 194 (73.4 bits), Expect = 1.1e-29, Sum P(4) = 1.1e-29
Identities = 41/100 (41%), Positives = 60/100 (60%)
Query: 905 VGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPF 964
V W R++LDEA ++NH++Q + A LR K RW L+GTPIQN D+Y+ +FLR PF
Sbjct: 595 VKWRRIILDEAHVVRNHKSQSSLAVCDLRGKYRWALTGTPIQNKELDVYALLKFLRCSPF 654
Query: 965 AVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGE 1004
++ K I G +L ++K++MLRRTK +
Sbjct: 655 DDLHTW----KKWIDNKSAGGQNRLNLLMKSLMLRRTKAQ 690
Score = 158 (60.7 bits), Expect = 1.1e-29, Sum P(4) = 1.1e-29
Identities = 34/72 (47%), Positives = 48/72 (66%)
Query: 771 QAKGRP---AAGTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCELAKFD 827
++KGR GTLVVCP S+LRQW E+ +KV S+ L+V V+HG++R L +D
Sbjct: 515 KSKGRKDTRRGGTLVVCPASLLRQWESEVESKV-SRQKLTVCVHHGNNRETKGKYLRDYD 573
Query: 828 VVITTYSIVSME 839
+V+TTY IV+ E
Sbjct: 574 IVVTTYQIVARE 585
Score = 130 (50.8 bits), Expect = 1.1e-29, Sum P(4) = 1.1e-29
Identities = 34/94 (36%), Positives = 49/94 (52%)
Query: 618 PGYPGVP-LTGLGGMKSKASDERLILQVAMQGISQPNAEASAPDGVLAVPLLRHQRIALS 676
P Y G + K+ + L V+++ + P A P G L V L+ HQ+ AL+
Sbjct: 390 PVYTGAQGMATFNNQKALTLESLKDLHVSLEDLPGPEVLAEDPVG-LKVSLMNHQKHALA 448
Query: 677 WMVQKETSSLHCSGGILADDQGLGKTISTIALIL 710
WM +E GGILADD GLGKT++ I+ +L
Sbjct: 449 WMSWRERKLPR--GGILADDMGLGKTLTMISSVL 480
Score = 37 (18.1 bits), Expect = 1.1e-29, Sum P(4) = 1.1e-29
Identities = 8/35 (22%), Positives = 17/35 (48%)
Query: 81 DMRDIATYPLYGLEISGAESGGLGDSSSQLEPTEQ 115
++ A P + I+G L D S++E +++
Sbjct: 116 ELEQRALSPSTRMSITGVRPQDLSDDDSEIEYSDE 150
>UNIPROTKB|E2R9I5 [details] [associations]
symbol:HLTF "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0016887 "ATPase activity" evidence=IEA]
[GO:0006357 "regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR014905 Pfam:PF00176 Pfam:PF00271 Pfam:PF08797
PROSITE:PS50089 PROSITE:PS51194 SMART:SM00184 SMART:SM00490
SMART:SM00910 Prosite:PS00518 GO:GO:0005524 GO:GO:0005634
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 GO:GO:0006357
GO:GO:0016887 Gene3D:3.30.40.10 InterPro:IPR013083 GO:GO:0004386
InterPro:IPR017907 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
CTD:6596 KO:K15711 OMA:SNWIDQF GeneTree:ENSGT00700000104586
EMBL:AAEX03013671 RefSeq:XP_534300.3 Ensembl:ENSCAFT00000013176
GeneID:477106 KEGG:cfa:477106 Uniprot:E2R9I5
Length = 1007
Score = 219 (82.2 bits), Expect = 1.8e-29, Sum P(5) = 1.8e-29
Identities = 43/102 (42%), Positives = 64/102 (62%)
Query: 901 PLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLR 960
PL + W RV+LDE +I+N Q +A L A+RRW L+GTPIQN++ DL+S FL+
Sbjct: 543 PLHSIRWLRVILDEGHAIRNPNAQQTKAVLDLEAERRWVLTGTPIQNSLKDLWSLLSFLK 602
Query: 961 YDPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTK 1002
PF + + I+ P++ G ++LQ+++K I LRRTK
Sbjct: 603 LKPFLDREWWHRTIQRPVTMGDEGGLRRLQSLIKNITLRRTK 644
Score = 148 (57.2 bits), Expect = 1.8e-29, Sum P(5) = 1.8e-29
Identities = 30/83 (36%), Positives = 49/83 (59%)
Query: 755 RVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGS 814
R++ G+SA + + RP TL++CP SVL W ++ + S L+ VY+G
Sbjct: 452 RMLKKGASAVEGSKKTDIEDRPRT-TLIICPLSVLSNWIDQFGQHIKSDVHLNFYVYYGP 510
Query: 815 SRTKDPCELAKFDVVITTYSIVS 837
R +DP L+K D+V+TTY+I++
Sbjct: 511 DRIRDPALLSKQDIVLTTYNILT 533
Score = 82 (33.9 bits), Expect = 1.8e-29, Sum P(5) = 1.8e-29
Identities = 16/21 (76%), Positives = 19/21 (90%)
Query: 690 GGILADDQGLGKTISTIALIL 710
GGILADD GLGKT++ IA+IL
Sbjct: 289 GGILADDMGLGKTLTAIAVIL 309
Score = 69 (29.3 bits), Expect = 1.8e-29, Sum P(5) = 1.8e-29
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 659 PDGVLAVPLLRHQRIALSWMVQKETS 684
P + PLL HQ+ AL+WMV +E S
Sbjct: 232 PAEAIETPLLPHQKQALAWMVSRENS 257
Score = 44 (20.5 bits), Expect = 1.9e-23, Sum P(3) = 1.9e-23
Identities = 16/66 (24%), Positives = 25/66 (37%)
Query: 336 GSMLKVPAIDYLDAKRQCEDSKNGLPIYGNSLSNITLGDGKRSAQPCTYSHSHSSRTKQM 395
G L V I K++C + + + GN+ S DG C+ S S +
Sbjct: 315 GKPLPVERIKKNQMKKECNVNDQSMKLGGNNASE--KADGLIKGSRCSGEPSISDVKGKK 372
Query: 396 VFAKDE 401
+ K E
Sbjct: 373 KYTKSE 378
Score = 38 (18.4 bits), Expect = 1.8e-29, Sum P(5) = 1.8e-29
Identities = 8/20 (40%), Positives = 12/20 (60%)
Query: 518 KKELDGVKEDMEAEIKTRSM 537
K E D + ED++ + KT M
Sbjct: 211 KTEFDKLFEDLKEDDKTHEM 230
>TAIR|locus:2207175 [details] [associations]
symbol:AT1G05120 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA;ISS] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA;ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008270 "zinc ion binding"
evidence=IEA] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50089
PROSITE:PS51194 SMART:SM00184 SMART:SM00490 Prosite:PS00518
EMBL:CP002684 GO:GO:0005524 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR013083 GO:GO:0004386
InterPro:IPR017907 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
KO:K15083 IPI:IPI00524131 RefSeq:NP_172004.1 UniGene:At.49853
ProteinModelPortal:F4I795 SMR:F4I795 EnsemblPlants:AT1G05120.1
GeneID:839319 KEGG:ath:AT1G05120 OMA:IGQYKPI Uniprot:F4I795
Length = 833
Score = 179 (68.1 bits), Expect = 5.1e-29, Sum P(4) = 5.1e-29
Identities = 35/70 (50%), Positives = 45/70 (64%)
Query: 902 LAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRY 961
L V W R++LDEA IK R+ ARA + L A RW LSGTP+QN + +LYS RFL+
Sbjct: 349 LHSVKWNRIILDEAHYIKERRSNTARAVFALEATYRWALSGTPLQNRVGELYSLIRFLQI 408
Query: 962 DPFAVYKSFC 971
P++ Y FC
Sbjct: 409 RPYSYY--FC 416
Score = 153 (58.9 bits), Expect = 5.1e-29, Sum P(4) = 5.1e-29
Identities = 34/72 (47%), Positives = 45/72 (62%)
Query: 769 VEQAKGRPAAG-TLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCELAKFD 827
V++A+ AAG TLV+CP + QW E+ + TS GS VLVYHG+ R K+ E +D
Sbjct: 184 VDRAQFGEAAGCTLVLCPLVAVSQWLNEIA-RFTSPGSTKVLVYHGAKRAKNIKEFMNYD 242
Query: 828 VVITTYSIVSME 839
V+TTYS V E
Sbjct: 243 FVLTTYSTVESE 254
Score = 134 (52.2 bits), Expect = 5.1e-29, Sum P(4) = 5.1e-29
Identities = 31/77 (40%), Positives = 46/77 (59%)
Query: 637 DERLILQVAMQGISQPNAEASAPDGVLAVPLLRHQRIALSWMVQKETSSLHCSGGILADD 696
DE + V + + AE + P L +PLLR+Q+ L+W ++E S +GGILAD+
Sbjct: 109 DEHMSEDVDLDQHNAVIAETAEPPSDLIMPLLRYQKEFLAWATKQEQS---VAGGILADE 165
Query: 697 QGLGKTISTIALILKER 713
G+GKTI I+L+L R
Sbjct: 166 MGMGKTIQAISLVLARR 182
Score = 42 (19.8 bits), Expect = 5.1e-29, Sum P(4) = 5.1e-29
Identities = 9/11 (81%), Positives = 10/11 (90%)
Query: 992 VLKTIMLRRTK 1002
VLK I+LRRTK
Sbjct: 474 VLKDILLRRTK 484
>SGD|S000000318 [details] [associations]
symbol:RAD16 "Protein that binds damaged DNA during NER"
species:4932 "Saccharomyces cerevisiae" [GO:0031463 "Cul3-RING
ubiquitin ligase complex" evidence=IDA] [GO:0008094 "DNA-dependent
ATPase activity" evidence=IDA] [GO:0004842 "ubiquitin-protein
ligase activity" evidence=IDA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0006974
"response to DNA damage stimulus" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0000113 "nucleotide-excision repair factor 4
complex" evidence=IDA] [GO:0003684 "damaged DNA binding"
evidence=IDA] [GO:0000715 "nucleotide-excision repair, DNA damage
recognition" evidence=IMP;IDA] [GO:0042787 "protein ubiquitination
involved in ubiquitin-dependent protein catabolic process"
evidence=IMP] InterPro:IPR001841 InterPro:IPR018957
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS00690 PROSITE:PS50089 PROSITE:PS51194 SMART:SM00184
SMART:SM00490 SGD:S000000318 Pfam:PF00097 Prosite:PS00518
GO:GO:0005524 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
EMBL:BK006936 GO:GO:0000113 Gene3D:3.30.40.10 InterPro:IPR013083
GO:GO:0004386 EMBL:X78993 EMBL:X66247 InterPro:IPR017907
GO:GO:0042787 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0031463 GO:GO:0000715 EMBL:M86929 EMBL:Z35983
EMBL:M83553 PIR:S25366 RefSeq:NP_009672.1 ProteinModelPortal:P31244
SMR:P31244 DIP:DIP-697N IntAct:P31244 MINT:MINT-616306
STRING:P31244 PaxDb:P31244 EnsemblFungi:YBR114W GeneID:852411
KEGG:sce:YBR114W CYGD:YBR114w GeneTree:ENSGT00700000104545
HOGENOM:HOG000179829 KO:K15083 OMA:GVVLNNY OrthoDB:EOG4Q5CXS
NextBio:971261 Genevestigator:P31244 GermOnline:YBR114W
Uniprot:P31244
Length = 790
Score = 187 (70.9 bits), Expect = 6.8e-29, Sum P(4) = 6.8e-29
Identities = 34/71 (47%), Positives = 50/71 (70%)
Query: 902 LAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRY 961
L + ++RV+LDEA +IK+ ++ ARA L+ ++RWCLSGTP+QN I ++YS RFL
Sbjct: 311 LHNIDFYRVILDEAHNIKDRQSNTARAVNNLKTQKRWCLSGTPLQNRIGEMYSLIRFLNI 370
Query: 962 DPFAVYKSFCS 972
+PF Y FC+
Sbjct: 371 NPFTKY--FCT 379
Score = 143 (55.4 bits), Expect = 6.8e-29, Sum P(4) = 6.8e-29
Identities = 29/67 (43%), Positives = 41/67 (61%)
Query: 780 TLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCELAKFDVVITTYSIVSME 839
+LVV PT L QW E+ +KG L + +YHG+SRT D +L +DVV+TTY+++
Sbjct: 233 SLVVAPTVALMQWKNEIEQH--TKGQLKIYIYHGASRTTDIKDLQGYDVVLTTYAVLESV 290
Query: 840 VPKQPLG 846
KQ G
Sbjct: 291 FRKQNYG 297
Score = 118 (46.6 bits), Expect = 6.8e-29, Sum P(4) = 6.8e-29
Identities = 26/60 (43%), Positives = 41/60 (68%)
Query: 659 PDGVLAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKE--RPPS 716
PDG + + LL Q L W++ +E S++ +GG+LAD+ G+GKTI TIAL++ + + PS
Sbjct: 177 PDG-MTIKLLPFQLEGLHWLISQE-ESIY-AGGVLADEMGMGKTIQTIALLMNDLTKSPS 233
Score = 57 (25.1 bits), Expect = 6.8e-29, Sum P(4) = 6.8e-29
Identities = 11/22 (50%), Positives = 16/22 (72%)
Query: 983 VKGYKKLQAVLKTIMLRRTKGE 1004
++ + +Q +LK IMLRRTK E
Sbjct: 428 LESFNNIQTLLKNIMLRRTKVE 449
Score = 41 (19.5 bits), Expect = 2.5e-12, Sum P(3) = 2.5e-12
Identities = 12/43 (27%), Positives = 19/43 (44%)
Query: 932 LRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAVYKSFCSMI 974
L +W S T I+ +++LY R V+ F SM+
Sbjct: 609 LNMSGKW-QSSTKIEALVEELYKLRSNKRTIKSIVFSQFTSML 650
>WB|WBGene00010061 [details] [associations]
symbol:F54E12.2 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0009792
GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 EMBL:Z73102 EMBL:Z82271
GeneTree:ENSGT00700000104545 KO:K15173 PIR:T18666
RefSeq:NP_502137.1 ProteinModelPortal:G5EEW5 SMR:G5EEW5
IntAct:G5EEW5 EnsemblMetazoa:F54E12.2.1 EnsemblMetazoa:F54E12.2.2
GeneID:178054 KEGG:cel:CELE_F54E12.2 CTD:178054 WormBase:F54E12.2
OMA:QTCAVTN NextBio:899526 Uniprot:G5EEW5
Length = 1091
Score = 207 (77.9 bits), Expect = 8.9e-29, Sum P(4) = 8.9e-29
Identities = 46/105 (43%), Positives = 66/105 (62%)
Query: 902 LAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRY 961
LA++ W RV+LDEA +IKN ++ ++A L A RWCLSGTPI N + DLYS RFLR
Sbjct: 645 LAQICWSRVILDEAHTIKNRQSLASKAVCRLSAFSRWCLSGTPIHNNLWDLYSLVRFLRI 704
Query: 962 DPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGEDC 1006
PF+ K + I +P+ P+ ++ + K ++LRRTK + C
Sbjct: 705 RPFSDDKYWKESI-MPMK--PIMA-DRVNLLTKNLLLRRTKDQTC 745
Score = 137 (53.3 bits), Expect = 8.9e-29, Sum P(4) = 8.9e-29
Identities = 57/199 (28%), Positives = 86/199 (43%)
Query: 561 DDEPD-ICILEDISQPARSNQS--LVLGKTLSMNRSACSNHSV-ALGKPVVTSQHSSYSD 616
DDE D I ++ED +P+ + G ++ N H V L P D
Sbjct: 361 DDEDDEIFVIED-DEPSHRQVAPKFPSGSVMTQNGLLPKRHIVDPLKAPQPDFNAMLEKD 419
Query: 617 YPGYPGVPLTGLGGMKSKASDERLILQVAMQGISQPNAE--ASAPDGVLAVPLLRHQRIA 674
+T + + +R++ Q+A + P+ P G + L+ HQ+
Sbjct: 420 NKKMMSGKMTDEKYKRIQLVSDRVVRQLAEATHTIPDETELTDTPKG-FKLELMPHQKAG 478
Query: 675 LSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKERPPS-FRTEDDNK-RQLETLNL 732
L+WM +ET GGILADD GLGKT+S I+LI ++ R ED N + E +
Sbjct: 479 LTWMRWRETQPQ--PGGILADDMGLGKTLSMISLIAHQKAARRARREDGNDDKDKEKRKV 536
Query: 733 DEEDNGIQVNGLDLVKQES 751
+E I NG +V S
Sbjct: 537 VKEQGLIPSNGTLIVAPAS 555
Score = 126 (49.4 bits), Expect = 8.9e-29, Sum P(4) = 8.9e-29
Identities = 24/67 (35%), Positives = 44/67 (65%)
Query: 776 PAAGTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKD--PCELAKFDVVITTY 833
P+ GTL+V P S++ QW E+ ++ LS ++HG+ + +D LA++DVVITT+
Sbjct: 544 PSNGTLIVAPASLIHQWDAEIDRRLDDS-VLSTYMFHGTKKQRDIDARRLARYDVVITTF 602
Query: 834 SIVSMEV 840
++++ E+
Sbjct: 603 NLIANEL 609
Score = 53 (23.7 bits), Expect = 3.9e-21, Sum P(4) = 3.9e-21
Identities = 15/52 (28%), Positives = 25/52 (48%)
Query: 710 LKERPPSFRT--EDDNKRQLETLNLDEEDNGIQVNGLDLVKQESDYCRVVPN 759
LK P F E DNK+ + DE+ IQ+ +V+Q ++ +P+
Sbjct: 405 LKAPQPDFNAMLEKDNKKMMSGKMTDEKYKRIQLVSDRVVRQLAEATHTIPD 456
Score = 49 (22.3 bits), Expect = 3.9e-21, Sum P(4) = 3.9e-21
Identities = 29/138 (21%), Positives = 56/138 (40%)
Query: 525 KEDMEAEIKTRSMASHLLKLSPESIQSNSSDCKSHVDDEPDICILEDISQPARSNQSLVL 584
++ E++ + S+ +K I + S SH + + ++SN S L
Sbjct: 35 RQSKESDDQEDSVVDESMKSVNSPIVNTPSSTASHCTNS-----FATSTPKSKSNASTRL 89
Query: 585 GKTLSMNRSACSNHSVALGKPVVTSQHSSYSDYPGYPGVPLTGLGGMKSKASDERLILQV 644
G + +RS+ NH + S+ Y PLT + ++++D R Q+
Sbjct: 90 GSSYGSSRSSSQNHESH-------DRSRSFVQYD--ENKPLTPISKKLAESTDLRSKAQL 140
Query: 645 A---MQGISQPNAEASAP 659
++ + NAE S+P
Sbjct: 141 RERLLRKSLKQNAEDSSP 158
Score = 40 (19.1 bits), Expect = 8.9e-29, Sum P(4) = 8.9e-29
Identities = 12/53 (22%), Positives = 22/53 (41%)
Query: 366 SLSNITLGDGKRSAQPCTYSHSHSSRTKQMVFAKDEGNDDLFPCWSTVSDSVE 418
S SN + G + S +H S + F + + N L P +++S +
Sbjct: 81 SKSNASTRLGSSYGSSRSSSQNHESHDRSRSFVQYDENKPLTPISKKLAESTD 133
Score = 39 (18.8 bits), Expect = 1.1e-28, Sum P(4) = 1.1e-28
Identities = 34/154 (22%), Positives = 59/154 (38%)
Query: 406 LFPCWSTVSDSVEPIDEAVGRNSSYHDGCNSFPFKDS--GQSFIGLSPSLLS--QNQVVH 461
+F S S S E ID+ + R+S S +DS +S ++ +++ + H
Sbjct: 10 MFDTSSDDSQSDEKIDDFICRSSPQRQSKESDDQEDSVVDESMKSVNSPIVNTPSSTASH 69
Query: 462 AKEEHEDLILESKRARFCQEICDGSSSRSPIDGRHLSLNLNGSRQYFPYAQPSTLNKKEL 521
+SK + SSRS H S + SR + Y + K L
Sbjct: 70 CTNSFATSTPKSKSNASTRLGSSYGSSRSSSQN-HESHDR--SRSFVQYDE-----NKPL 121
Query: 522 DGVKEDMEAEIKTRSMASHLLKLSPESIQSNSSD 555
+ + + RS A +L +S++ N+ D
Sbjct: 122 TPISKKLAESTDLRSKAQLRERLLRKSLKQNAED 155
Score = 38 (18.4 bits), Expect = 1.4e-28, Sum P(4) = 1.4e-28
Identities = 16/69 (23%), Positives = 26/69 (37%)
Query: 426 RNSSYHDGCNSFPFKDSGQSFIGLSPSLLSQNQVVHAKEEHEDLILESKRARFCQEICDG 485
+N HD SF D + +S L + + E L+ +S + Q D
Sbjct: 101 QNHESHDRSRSFVQYDENKPLTPISKKLAESTDLRSKAQLRERLLRKSLK----QNAEDS 156
Query: 486 SSSRSPIDG 494
S +R+ G
Sbjct: 157 SPTRAASGG 165
>CGD|CAL0000717 [details] [associations]
symbol:orf19.5675 species:5476 "Candida albicans" [GO:0005730
"nucleolus" evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA]
[GO:0032183 "SUMO binding" evidence=IEA] [GO:0006333 "chromatin
assembly or disassembly" evidence=IEA] [GO:0007533 "mating type
switching" evidence=IEA] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50089
PROSITE:PS51194 SMART:SM00184 SMART:SM00490 CGD:CAL0000717
GO:GO:0005524 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
Gene3D:3.30.40.10 InterPro:IPR013083 GO:GO:0004386 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 EMBL:AACQ01000129
EMBL:AACQ01000128 RefSeq:XP_713356.1 RefSeq:XP_713403.1
ProteinModelPortal:Q59UP5 GeneID:3644990 GeneID:3645010
KEGG:cal:CaO19.13120 KEGG:cal:CaO19.5675 Uniprot:Q59UP5
Length = 1102
Score = 203 (76.5 bits), Expect = 5.1e-28, Sum P(4) = 5.1e-28
Identities = 45/102 (44%), Positives = 67/102 (65%)
Query: 909 RVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAVYK 968
R++LDEAQ+IKN + ++A LRA+ R+CL+GTP+QN I++LY RFL+ P+ +
Sbjct: 575 RIILDEAQAIKNKQALASKAMTYLRAQYRFCLTGTPMQNGIEELYPLLRFLKIQPYCSEE 634
Query: 969 SFCSMIKVPI-SKNPV-------KGYKKLQAVLKTIMLRRTK 1002
F + I PI SK + + KK+Q +LK+I+LRRTK
Sbjct: 635 KFRADILTPIKSKTDLYDEYDVKESMKKIQVLLKSILLRRTK 676
Score = 137 (53.3 bits), Expect = 5.1e-28, Sum P(4) = 5.1e-28
Identities = 30/56 (53%), Positives = 39/56 (69%)
Query: 655 EASAPDGVLAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALIL 710
E + P+ L V LL+HQR+ L+WM + E S GGILADD GLGKTI T+AL++
Sbjct: 415 EPTPPE--LKVNLLKHQRMGLTWMKRMEASK--AKGGILADDMGLGKTIQTLALMM 466
Score = 114 (45.2 bits), Expect = 5.1e-28, Sum P(4) = 5.1e-28
Identities = 25/64 (39%), Positives = 38/64 (59%)
Query: 781 LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTK-DPCELAK-FDVVITTYSIVSM 838
L+V P S+LRQW E+ +K S LSV +YHG + K +L K +D+V+ +Y+ +
Sbjct: 473 LIVAPVSLLRQWVAEIESKTKSDVFLSVGIYHGDDKKKMKDFDLMKEYDIVLVSYTTLVQ 532
Query: 839 EVPK 842
E K
Sbjct: 533 EWKK 536
Score = 49 (22.3 bits), Expect = 5.1e-28, Sum P(4) = 5.1e-28
Identities = 41/183 (22%), Positives = 68/183 (37%)
Query: 288 DPSSFNFQHLLSSEETATKPKDEEGEFTTEIACSSSGLVLNAQGGPGKGSMLKVPAIDYL 347
DP + ++ T K ++ E+ S+ +A P + S P I
Sbjct: 23 DPQPSSPASFVTGNGTDVKQATDQHEYKNPFPTISAVNSASANTLPLRPSFSHQPPIK-- 80
Query: 348 DAKRQCEDSKNGLPIYGNSLSNITLGDGKRSAQPCTYSHSHSSRTKQMVFAKDEGNDDLF 407
+ + S+N P N N + + A+P T R V A + +DD
Sbjct: 81 KPRLESLHSRNTSPFSLNHNINNNNMNPQLLARPIT-----KPREPIEVIALSDSDDDKK 135
Query: 408 PCWSTVSDSVEPIDEAVGRNSSYHDGCNSFPFKDSGQSFIGLSPSLLSQNQVVHAKEEHE 467
P + + +E +DE N S+ D SF D S PS + +Q V K + E
Sbjct: 136 PDNESDDEDIEVLDEQQVANISWKD--TSF---DQSNSI----PSTTTSHQQVTEKLKPE 186
Query: 468 DLI 470
++
Sbjct: 187 PVL 189
>RGD|1309031 [details] [associations]
symbol:Hltf "helicase-like transcription factor" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0006200 "ATP catabolic process" evidence=ISO] [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=ISO] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0016887 "ATPase activity" evidence=ISO] [GO:0005730 "nucleolus"
evidence=ISO] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR014905 Pfam:PF00176 Pfam:PF00271
Pfam:PF08797 PROSITE:PS50089 PROSITE:PS51194 SMART:SM00184
SMART:SM00490 SMART:SM00910 RGD:1309031 Prosite:PS00518
GO:GO:0005524 GO:GO:0005634 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 GO:GO:0006357 GO:GO:0016887 Gene3D:3.30.40.10
InterPro:IPR013083 GO:GO:0004386 InterPro:IPR017907
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 IPI:IPI00372747
Ensembl:ENSRNOT00000000095 UCSC:RGD:1309031 ArrayExpress:F1LT77
Uniprot:F1LT77
Length = 1004
Score = 222 (83.2 bits), Expect = 4.4e-27, Sum P(3) = 4.4e-27
Identities = 43/102 (42%), Positives = 66/102 (64%)
Query: 901 PLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLR 960
PL + W RV+LDE +I+N Q +A L A+RRW L+GTPIQN++ DL+S FL+
Sbjct: 540 PLHSIKWLRVILDEGHAIRNPNAQQTKAVLELEAERRWVLTGTPIQNSLKDLWSLLSFLK 599
Query: 961 YDPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTK 1002
PF + + +I+ P++ G ++LQ+++K+I LRRTK
Sbjct: 600 LKPFTDREWWHRIIQRPVTTGDEGGLRRLQSLIKSITLRRTK 641
Score = 137 (53.3 bits), Expect = 4.4e-27, Sum P(3) = 4.4e-27
Identities = 34/125 (27%), Positives = 65/125 (52%)
Query: 724 KRQLETLNLDEEDNGIQVNGLDLVKQESDYCRVVPNGSSA-------KSFNFVEQAK--- 773
K +L+ LD + +V G +K+++ + + A K + +E +K
Sbjct: 409 KGKLKNTQLDTKS---KVKGSSKIKEDTQFALALTYFGPATKKKMLKKGTSVMESSKKCD 465
Query: 774 -GRPAAGTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCELAKFDVVITT 832
G TL++CP SVL W +++ + S+ L++ VY+G R +D L+K D+++TT
Sbjct: 466 TGERTRTTLIICPLSVLSNWIDQIGQHIKSEVDLNLYVYYGPDRIRDSTWLSKQDIILTT 525
Query: 833 YSIVS 837
Y+I++
Sbjct: 526 YNILT 530
Score = 87 (35.7 bits), Expect = 4.4e-27, Sum P(3) = 4.4e-27
Identities = 18/35 (51%), Positives = 27/35 (77%)
Query: 676 SWMVQKETSSLHCSGGILADDQGLGKTISTIALIL 710
++ V++ ++H GGILADD GLGKT++ IA+IL
Sbjct: 276 NFSVKERPENVH--GGILADDMGLGKTLTAIAVIL 308
Score = 66 (28.3 bits), Expect = 6.5e-25, Sum P(3) = 6.5e-25
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 659 PDGVLAVPLLRHQRIALSWMVQKETS 684
P + PLL HQ+ AL+WM+ +E S
Sbjct: 231 PAEAVETPLLPHQKQALAWMIARENS 256
>TAIR|locus:2196115 [details] [associations]
symbol:AT1G02670 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA;ISS] [GO:0004386 "helicase activity"
evidence=IEA;ISS] [GO:0005524 "ATP binding" evidence=IEA;ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0006281 "DNA repair"
evidence=ISS] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 EMBL:CP002684
GO:GO:0005524 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 KO:K15083 IPI:IPI00540835
RefSeq:NP_171767.1 UniGene:At.51462 ProteinModelPortal:F4HXL1
SMR:F4HXL1 PRIDE:F4HXL1 EnsemblPlants:AT1G02670.1 GeneID:839532
KEGG:ath:AT1G02670 OMA:THITFAR Uniprot:F4HXL1
Length = 678
Score = 169 (64.5 bits), Expect = 1.3e-26, Sum P(3) = 1.3e-26
Identities = 33/78 (42%), Positives = 49/78 (62%)
Query: 895 LDIVAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYS 954
+D PL + W R+++DEA IKN ++ A+A + L A RW LSGTP+QN +D+LYS
Sbjct: 257 VDETMSPLHSIKWNRIIVDEAHDIKNRSSRTAKAVFALEATYRWALSGTPLQNDVDELYS 316
Query: 955 Y--FRFLRYDPFAVYKSF 970
+ FL + ++ Y SF
Sbjct: 317 LVSYSFLNFF-YSTYASF 333
Score = 145 (56.1 bits), Expect = 1.3e-26, Sum P(3) = 1.3e-26
Identities = 34/75 (45%), Positives = 46/75 (61%)
Query: 769 VEQAKGRPAAG-TLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCELAKFD 827
V++AK R A G TLV+ P L QW +E+ +++TS GS VL YHG R K+ +L +D
Sbjct: 180 VDRAKSREAVGHTLVLVPPVALSQWLDEI-SRLTSPGSTRVLQYHGPKRDKNVQKLMNYD 238
Query: 828 VVITTYSIVSMEVPK 842
V+TT IV E K
Sbjct: 239 FVLTTSPIVENEYRK 253
Score = 123 (48.4 bits), Expect = 1.3e-26, Sum P(3) = 1.3e-26
Identities = 27/60 (45%), Positives = 40/60 (66%)
Query: 654 AEASAPDGVLAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKER 713
AEA+ L +PLL++Q+ L+W +E S++ GGILAD+ G+GKTI I+L+L R
Sbjct: 121 AEAAEQPLDLIIPLLKYQKEFLAWATIQELSAVR--GGILADEMGMGKTIQAISLVLARR 178
>MGI|MGI:1196437 [details] [associations]
symbol:Hltf "helicase-like transcription factor"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003824 "catalytic
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006200 "ATP catabolic process"
evidence=IDA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006357 "regulation of transcription from RNA
polymerase II promoter" evidence=IDA] [GO:0008152 "metabolic
process" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0016568 "chromatin modification" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0016818 "hydrolase activity,
acting on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0016874 "ligase activity" evidence=IEA]
[GO:0016887 "ATPase activity" evidence=IDA] [GO:0046872 "metal ion
binding" evidence=IEA] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR014905 Pfam:PF00176 Pfam:PF00271
Pfam:PF08797 PROSITE:PS50089 PROSITE:PS51194 SMART:SM00184
SMART:SM00490 SMART:SM00910 UniPathway:UPA00143 MGI:MGI:1196437
Prosite:PS00518 GO:GO:0005524 GO:GO:0005634 GO:GO:0046872
GO:GO:0003677 GO:GO:0016874 GO:GO:0008270 GO:GO:0006357
GO:GO:0006351 GO:GO:0016568 GO:GO:0016887 GO:GO:0016567
Gene3D:3.30.40.10 InterPro:IPR013083 GO:GO:0004386
InterPro:IPR017907 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 CTD:6596 HOVERGEN:HBG079192 KO:K15711 OMA:SNWIDQF
EMBL:AF010138 EMBL:AF010600 EMBL:BC039796 EMBL:BC057116
EMBL:BC059240 IPI:IPI00315178 RefSeq:NP_033236.2 RefSeq:NP_659208.2
UniGene:Mm.209650 ProteinModelPortal:Q6PCN7 SMR:Q6PCN7
STRING:Q6PCN7 PhosphoSite:Q6PCN7 PRIDE:Q6PCN7
Ensembl:ENSMUST00000002502 GeneID:20585 KEGG:mmu:20585
UCSC:uc008osk.1 GeneTree:ENSGT00700000104586 HOGENOM:HOG000172619
InParanoid:Q6PCN7 OrthoDB:EOG47SSD6 NextBio:298877 Bgee:Q6PCN7
CleanEx:MM_HLTF Genevestigator:Q6PCN7 GermOnline:ENSMUSG00000002428
Uniprot:Q6PCN7
Length = 1003
Score = 221 (82.9 bits), Expect = 1.4e-26, Sum P(3) = 1.4e-26
Identities = 43/102 (42%), Positives = 65/102 (63%)
Query: 901 PLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLR 960
PL + W RV+LDE +I+N Q +A L A+RRW L+GTPIQN++ DL+S FL+
Sbjct: 539 PLHSIKWLRVILDEGHAIRNPNAQQTKAVLELEAERRWVLTGTPIQNSLKDLWSLLSFLK 598
Query: 961 YDPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTK 1002
PF + + +I+ P++ G ++LQ+++K I LRRTK
Sbjct: 599 LKPFIDREWWYRIIQRPVTTGDEGGLRRLQSLIKNITLRRTK 640
Score = 133 (51.9 bits), Expect = 1.4e-26, Sum P(3) = 1.4e-26
Identities = 24/64 (37%), Positives = 39/64 (60%)
Query: 774 GRPAAGTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCELAKFDVVITTY 833
G TL++CP SVL W ++ V S+ L+ VY+G R +D L+K D+++TTY
Sbjct: 466 GERTRATLIICPLSVLSNWIDQFGQHVKSEVHLNFYVYYGPDRIRDSAWLSKQDIILTTY 525
Query: 834 SIVS 837
+I++
Sbjct: 526 NILT 529
Score = 87 (35.7 bits), Expect = 1.4e-26, Sum P(3) = 1.4e-26
Identities = 18/35 (51%), Positives = 27/35 (77%)
Query: 676 SWMVQKETSSLHCSGGILADDQGLGKTISTIALIL 710
++ V++ ++H GGILADD GLGKT++ IA+IL
Sbjct: 277 NFSVKERPENVH--GGILADDMGLGKTLTAIAVIL 309
Score = 67 (28.6 bits), Expect = 1.7e-24, Sum P(3) = 1.7e-24
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 659 PDGVLAVPLLRHQRIALSWMVQKETS 684
P + PLL HQ+ AL+WM+ +E S
Sbjct: 232 PAEAIETPLLPHQKQALAWMIARENS 257
>SGD|S000005717 [details] [associations]
symbol:ULS1 "Protein involved in proteolytic control of
sumoylated substrates" species:4932 "Saccharomyces cerevisiae"
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA;IDA;IPI] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0005739 "mitochondrion"
evidence=IDA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=ISS] [GO:0007533 "mating type switching" evidence=IMP]
[GO:0006333 "chromatin assembly or disassembly"
evidence=IGI;IMP;IPI] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0032183 "SUMO binding" evidence=IPI] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50089
PROSITE:PS51194 SMART:SM00184 SMART:SM00490 SGD:S000005717
Prosite:PS00518 GO:GO:0005739 GO:GO:0005524 GO:GO:0005730
EMBL:BK006948 GO:GO:0006355 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 GO:GO:0006351 GO:GO:0006333 Gene3D:3.30.40.10
InterPro:IPR013083 GO:GO:0004386 InterPro:IPR017907 HSSP:Q97XQ5
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008094 GO:GO:0007533 GeneTree:ENSGT00700000104545
EMBL:Z75099 PIR:S67083 RefSeq:NP_014834.1 ProteinModelPortal:Q08562
SMR:Q08562 DIP:DIP-996N IntAct:Q08562 MINT:MINT-426553
STRING:Q08562 PaxDb:Q08562 EnsemblFungi:YOR191W GeneID:854363
KEGG:sce:YOR191W CYGD:YOR191w HOGENOM:HOG000065999 OMA:NENMNMS
OrthoDB:EOG4NZZ2M NextBio:976476 Genevestigator:Q08562
GermOnline:YOR191W Uniprot:Q08562
Length = 1619
Score = 188 (71.2 bits), Expect = 5.3e-26, Sum P(4) = 5.3e-26
Identities = 42/107 (39%), Positives = 63/107 (58%)
Query: 907 WFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAV 966
++R++LDE Q+IKN T+ ++AC + RW LSGTPIQN++D+LYS RFLR P+
Sbjct: 1102 FYRILLDEGQNIKNKNTRASKACCTINGMYRWVLSGTPIQNSMDELYSLIRFLRIPPYHK 1161
Query: 967 YKSFCSMIKVPISKNPVKGY---------KKLQAVLKTIMLRRTKGE 1004
+ F I +N Y +K++ +L IMLRR+K +
Sbjct: 1162 EQRFKLDIGRFFQRNKQYQYDNEDRKNALRKVRVLLNAIMLRRSKAD 1208
Score = 151 (58.2 bits), Expect = 5.3e-26, Sum P(4) = 5.3e-26
Identities = 35/75 (46%), Positives = 47/75 (62%)
Query: 639 RLILQVAMQGISQPNAEASAPDGVLAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQG 698
R +L+ Q S + EA P+ + V LL+HQR+ L W++Q E S+ GG+LADD G
Sbjct: 916 RALLENVKQSESIIDGEALTPED-MTVNLLKHQRLGLHWLLQVENSAK--KGGLLADDMG 972
Query: 699 LGKTISTIALILKER 713
LGKTI IAL+L R
Sbjct: 973 LGKTIQAIALMLANR 987
Score = 105 (42.0 bits), Expect = 5.3e-26, Sum P(4) = 5.3e-26
Identities = 22/64 (34%), Positives = 35/64 (54%)
Query: 781 LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSS--RTKDPCELAKFDVVITTYSIVSM 838
L+V P SVLR W EL KV + + ++ GS + K +LA++D V+ +Y ++
Sbjct: 997 LIVAPVSVLRVWKGELETKVKKRAKFTTFIFGGSGNGKVKHWRDLARYDAVLVSYQTLAN 1056
Query: 839 EVPK 842
E K
Sbjct: 1057 EFKK 1060
Score = 48 (22.0 bits), Expect = 5.3e-26, Sum P(4) = 5.3e-26
Identities = 33/140 (23%), Positives = 60/140 (42%)
Query: 490 SPIDGRHLSLNLNG--SRQYF--PYAQPSTL---NKKELDGVKEDMEAEIKTRSMASHLL 542
S +D + LNLN S+Q F P + ++L NK ++ GV ++ S A
Sbjct: 188 SNLDFQEEKLNLNNKPSQQQFSDPETKDNSLKSENKDQIKGVTTTSYRDLPIESSA---- 243
Query: 543 KLSPESIQSNSSDCKSHVDDE---PDI-CILEDISQPARSNQSLVLGKTLSMNRSACSNH 598
Q+NS + ++ +E P + L + ++ + V GKT ++ N+
Sbjct: 244 -FQDSETQNNSKNTIPNIVNEKRTPALPSNLSSVESSLKNETAKVEGKT-TVRLPGLQNN 301
Query: 599 SVALGKPVVTSQHSSYSDYP 618
VAL + + +S+ P
Sbjct: 302 -VALLEQEQSELFKHFSEQP 320
Score = 46 (21.3 bits), Expect = 8.4e-26, Sum P(4) = 8.4e-26
Identities = 12/46 (26%), Positives = 24/46 (52%)
Query: 519 KELDGVKEDMEAEIKTRSMASHLLK---LSPESIQSNSSDCKSHVD 561
KE G +E +S +S +L+ ++ ++ QS+ +C S +D
Sbjct: 426 KEASGSNSIPTSETDAQSSSSSVLQGTIMTEQATQSSQHECNSSLD 471
Score = 41 (19.5 bits), Expect = 7.3e-15, Sum P(4) = 7.3e-15
Identities = 12/34 (35%), Positives = 17/34 (50%)
Query: 700 GKTISTIALILKERPPSFRTEDDNKRQLETLNLD 733
G+TIS+ IL + + + KRQL LD
Sbjct: 534 GRTISSTQQILVDEAENQLNKLKEKRQLTKSKLD 567
Score = 37 (18.1 bits), Expect = 7.0e-25, Sum P(4) = 7.0e-25
Identities = 7/16 (43%), Positives = 11/16 (68%)
Query: 514 STLNKKELDGVKEDME 529
S+ K+ DGV++D E
Sbjct: 166 SSYVSKDYDGVEDDFE 181
>POMBASE|SPCC330.01c [details] [associations]
symbol:rhp16 "Rad16 homolog Rhp16" species:4896
"Schizosaccharomyces pombe" [GO:0000109 "nucleotide-excision repair
complex" evidence=IPI] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004003 "ATP-dependent DNA helicase activity" evidence=ISM]
[GO:0004842 "ubiquitin-protein ligase activity" evidence=ISM]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005524 "ATP
binding" evidence=ISM] [GO:0005634 "nucleus" evidence=IC;IDA]
[GO:0006289 "nucleotide-excision repair" evidence=IGI] [GO:0006290
"pyrimidine dimer repair" evidence=IMP] [GO:0008270 "zinc ion
binding" evidence=ISM] [GO:0016567 "protein ubiquitination"
evidence=ISM] [GO:0034644 "cellular response to UV" evidence=IGI]
InterPro:IPR001841 InterPro:IPR018957 InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690
PROSITE:PS50089 PROSITE:PS51194 SMART:SM00184 SMART:SM00490
PomBase:SPCC330.01c Pfam:PF00097 Prosite:PS00518 GO:GO:0005524
EMBL:CU329672 GenomeReviews:CU329672_GR GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR013083 GO:GO:0004003
GO:GO:0034644 GO:GO:0004842 InterPro:IPR017907 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006289 GO:GO:0000109
HOGENOM:HOG000179829 OrthoDB:EOG4Q5CXS EMBL:S83324 EMBL:AB027876
PIR:T41479 PIR:T52472 ProteinModelPortal:P79051 STRING:P79051
NextBio:20800041 Uniprot:P79051
Length = 861
Score = 182 (69.1 bits), Expect = 8.6e-26, Sum P(4) = 8.6e-26
Identities = 36/70 (51%), Positives = 48/70 (68%)
Query: 902 LAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRY 961
L ++ ++R++LDEA IK+ ARA GLR R+ CLSGTP+QN I +L+S RFLR
Sbjct: 382 LHQMEFYRIILDEAHGIKSRTCNTARAVCGLRTTRKICLSGTPLQNRIGELFSLLRFLRA 441
Query: 962 DPFAVYKSFC 971
DPFA Y +C
Sbjct: 442 DPFAYY--YC 449
Score = 118 (46.6 bits), Expect = 8.6e-26, Sum P(4) = 8.6e-26
Identities = 27/78 (34%), Positives = 46/78 (58%)
Query: 769 VEQAKGRPAAGTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCELAKFDV 828
+ + +G+P TLVV P + QW EE+ T+K +LS +Y+G +R EL+ +DV
Sbjct: 296 LSEPRGKP---TLVVAPVVAIMQWKEEIDTH-TNK-ALSTYLYYGQARDISGEELSSYDV 350
Query: 829 VITTYSIVSMEVPKQPLG 846
V+T+Y+++ K+ G
Sbjct: 351 VLTSYNVIESVYRKERSG 368
Score = 116 (45.9 bits), Expect = 8.6e-26, Sum P(4) = 8.6e-26
Identities = 26/50 (52%), Positives = 34/50 (68%)
Query: 663 LAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKE 712
L + LL QR + W+ ++E SS GGILAD+ G+GKTI TIAL+L E
Sbjct: 251 LVLNLLPFQREGVYWLKRQEDSSF--GGGILADEMGMGKTIQTIALLLSE 298
Score = 61 (26.5 bits), Expect = 8.6e-26, Sum P(4) = 8.6e-26
Identities = 19/37 (51%), Positives = 24/37 (64%)
Query: 973 MIKVPISK----NPVK-GYKKLQAVLKTIMLRRTKGE 1004
M+K PI K P K +KK+ ++LK IMLRRTK E
Sbjct: 485 MLK-PIQKFGYEGPGKLAFKKVHSLLKHIMLRRTKLE 520
>DICTYBASE|DDB_G0272082 [details] [associations]
symbol:DDB_G0272082 "CHR group protein" species:44689
"Dictyostelium discoideum" [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0046872 "metal ion binding"
evidence=IEA] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50089
PROSITE:PS51194 SMART:SM00184 SMART:SM00490 dictyBase:DDB_G0272082
Prosite:PS00518 GO:GO:0005524 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 EMBL:AAFI02000007 Gene3D:3.30.40.10
InterPro:IPR013083 GO:GO:0004386 InterPro:IPR017907 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
RefSeq:XP_001732968.1 EnsemblProtists:DDB0233429 GeneID:8618298
KEGG:ddi:DDB_G0272082 Uniprot:B0G105
Length = 1838
Score = 226 (84.6 bits), Expect = 2.9e-25, Sum P(5) = 2.9e-25
Identities = 45/109 (41%), Positives = 66/109 (60%)
Query: 896 DIVAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSY 955
+I + + V WFRVVLDEA +IK T+ ++A + L + RWC++GTPIQN +DDL+S
Sbjct: 1111 NITSSGIHSVKWFRVVLDEAHTIKERSTRTSKATYALESIIRWCVTGTPIQNKLDDLFSL 1170
Query: 956 FRFLRYDPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGE 1004
FLR +PF Y + I P G+ +L+ +L I+LRR K +
Sbjct: 1171 LHFLRVEPFHNYSWWNQYILKPSKLKDDIGFSRLRVLLSKILLRRLKDQ 1219
Score = 141 (54.7 bits), Expect = 2.9e-25, Sum P(5) = 2.9e-25
Identities = 27/60 (45%), Positives = 39/60 (65%)
Query: 780 TLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCELAKFDVVITTYSIVSME 839
TL+VCP SVL+QW E+ N SL+V +YHG +R +D L K D+++TTY+ + E
Sbjct: 944 TLIVCPVSVLQQWHSEIINNTNP--SLNVYIYHGPNRNRDRSFLMKHDIILTTYTTLVAE 1001
Score = 84 (34.6 bits), Expect = 2.9e-25, Sum P(5) = 2.9e-25
Identities = 40/133 (30%), Positives = 54/133 (40%)
Query: 636 SDERLILQVAMQGISQPNAEASAPDGVLAVPLLRHQRIALSWMVQKETS------SL--- 686
S + L Q I++ E P + L +QR AL WM +E S SL
Sbjct: 815 STDNLFKQQIESIITETKLEMDEPKQ-FKLTLRTYQRQALYWMHHRELSEPEEIISLVDL 873
Query: 687 -------HCSGGILADDQGLGKTISTIALIL--KERPP---SFRTEDDNKRQLETLNLDE 734
GG+L DD G+GKTI IA IL K P S E++N N +
Sbjct: 874 DGSKDLSFVKGGLLCDDMGMGKTIEIIATILANKSNYPINSSSDIENNNNNNNNYNNNNN 933
Query: 735 EDNGIQVNGLDLV 747
N +Q + L+
Sbjct: 934 NTNQVQQSNCTLI 946
Score = 41 (19.5 bits), Expect = 2.9e-25, Sum P(5) = 2.9e-25
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 575 PARSNQSLVLGKTLSMNRSACSNHS 599
PA SNQS+ L + N S +N++
Sbjct: 727 PATSNQSIPLFHNNNNNNSNSNNNN 751
Score = 38 (18.4 bits), Expect = 2.9e-25, Sum P(5) = 2.9e-25
Identities = 21/76 (27%), Positives = 30/76 (39%)
Query: 373 GDGKRSAQPCTYSHSHSSRTKQMVFAKDEGNDDLFPCWSTVSDSVEPIDEAVGRNSSYHD 432
G S P TY H SS T V+ N +S+ S S N++ ++
Sbjct: 437 GSNLVSPSPTTYPHYISSST---VW-----NQQYISFFSSSSASSSASVNIKSTNNNNNN 488
Query: 433 GCNSFPFKDSGQSFIG 448
N+ S +SFIG
Sbjct: 489 NNNNMNNTISKESFIG 504
>UNIPROTKB|I3LM88 [details] [associations]
symbol:HLTF "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0016887 "ATPase activity" evidence=IEA] [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR014905 Pfam:PF00176 Pfam:PF00271
Pfam:PF08797 PROSITE:PS50089 PROSITE:PS51194 SMART:SM00184
SMART:SM00490 SMART:SM00910 Prosite:PS00518 GO:GO:0005524
GO:GO:0005634 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
GO:GO:0006357 GO:GO:0016887 Gene3D:3.30.40.10 InterPro:IPR013083
GO:GO:0004386 InterPro:IPR017907 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 OMA:SNWIDQF GeneTree:ENSGT00700000104586
EMBL:CU915669 EMBL:FP476099 Ensembl:ENSSSCT00000023239
Uniprot:I3LM88
Length = 1011
Score = 219 (82.2 bits), Expect = 4.8e-25, Sum P(4) = 4.8e-25
Identities = 43/102 (42%), Positives = 64/102 (62%)
Query: 901 PLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLR 960
PL + W RV+LDE +I+N Q +A L A+RRW L+GTPIQN++ DL+S FL+
Sbjct: 547 PLHSIRWLRVILDEGHAIRNPNAQQTKAVLDLEAERRWVLTGTPIQNSLKDLWSLLSFLK 606
Query: 961 YDPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTK 1002
PF + + I+ P++ G ++LQ+++K I LRRTK
Sbjct: 607 LKPFIDREWWHRTIQRPVTMGDEGGLRRLQSLIKNITLRRTK 648
Score = 146 (56.5 bits), Expect = 4.8e-25, Sum P(4) = 4.8e-25
Identities = 29/83 (34%), Positives = 49/83 (59%)
Query: 755 RVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGS 814
+++ G+SA + + RP TL++CP SVL W ++ + S L+ VY+G
Sbjct: 456 KMLKKGASAVEGSKKTDVEERPRT-TLIICPLSVLSNWIDQFGQHIKSDVHLNFYVYYGP 514
Query: 815 SRTKDPCELAKFDVVITTYSIVS 837
R +DP L+K D+V+TTY+I++
Sbjct: 515 DRVRDPALLSKQDIVLTTYNILT 537
Score = 94 (38.1 bits), Expect = 9.3e-20, Sum P(4) = 9.3e-20
Identities = 30/90 (33%), Positives = 44/90 (48%)
Query: 690 GGILADDQGLGKTISTIALILKE----RPPSFRTEDDNKRQLETLNLDEEDNGIQVNGLD 745
GGILADD GLGKT++ IA+IL +P F E K QL+ + D +Q+ G +
Sbjct: 289 GGILADDMGLGKTLTAIAVILTNFHDGKPLPF--ERIKKNQLKK-ECNVYDESVQLGGNN 345
Query: 746 LVKQESDYCRVVPNGSSAKSFNFVEQAKGR 775
+++D GS + KG+
Sbjct: 346 -TSEKADGLTKEMEGSRCSGEPSISDVKGK 374
Score = 68 (29.0 bits), Expect = 4.8e-25, Sum P(4) = 4.8e-25
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 659 PDGVLAVPLLRHQRIALSWMVQKETS 684
P + PLL HQ+ AL+WMV +E S
Sbjct: 232 PAEAVETPLLPHQKQALAWMVSRENS 257
Score = 38 (18.4 bits), Expect = 4.8e-25, Sum P(4) = 4.8e-25
Identities = 8/20 (40%), Positives = 12/20 (60%)
Query: 518 KKELDGVKEDMEAEIKTRSM 537
K E D + ED++ + KT M
Sbjct: 211 KTEFDKLFEDLKEDDKTHEM 230
>UNIPROTKB|Q14527 [details] [associations]
symbol:HLTF "Helicase-like transcription factor"
species:9606 "Homo sapiens" [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0016568 "chromatin modification" evidence=IEA]
[GO:0016874 "ligase activity" evidence=IEA] [GO:0006357 "regulation
of transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0016887 "ATPase activity" evidence=IEA] [GO:0016567 "protein
ubiquitination" evidence=IEA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=TAS] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] InterPro:IPR001841
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR014905
Pfam:PF00176 Pfam:PF00271 Pfam:PF08797 PROSITE:PS50089
PROSITE:PS51194 SMART:SM00184 SMART:SM00490 SMART:SM00910
UniPathway:UPA00143 Prosite:PS00518 GO:GO:0005524 GO:GO:0005634
GO:GO:0006355 GO:GO:0046872 GO:GO:0003677 GO:GO:0016874
EMBL:CH471052 GO:GO:0008270 GO:GO:0006357 GO:GO:0006351
GO:GO:0016568 GO:GO:0016887 GO:GO:0016567 Gene3D:3.30.40.10
InterPro:IPR013083 GO:GO:0004386 InterPro:IPR017907 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 EMBL:L34673
EMBL:Z46606 EMBL:AJ418064 EMBL:BC044659 EMBL:S64671 IPI:IPI00339381
IPI:IPI00759790 PIR:S49618 RefSeq:NP_003062.2 RefSeq:NP_620636.1
UniGene:Hs.3068 PDB:2L1I PDBsum:2L1I ProteinModelPortal:Q14527
SMR:Q14527 DIP:DIP-29828N IntAct:Q14527 MINT:MINT-1639589
STRING:Q14527 PhosphoSite:Q14527 DMDM:60390864 PaxDb:Q14527
PRIDE:Q14527 DNASU:6596 Ensembl:ENST00000310053
Ensembl:ENST00000392912 Ensembl:ENST00000465259
Ensembl:ENST00000494055 GeneID:6596 KEGG:hsa:6596 UCSC:uc003ewq.1
CTD:6596 GeneCards:GC03M148747 H-InvDB:HIX0024319 HGNC:HGNC:11099
HPA:HPA015284 MIM:603257 neXtProt:NX_Q14527 PharmGKB:PA35949
HOVERGEN:HBG079192 InParanoid:Q14527 KO:K15711 OMA:SNWIDQF
PhylomeDB:Q14527 GenomeRNAi:6596 NextBio:25655 ArrayExpress:Q14527
Bgee:Q14527 CleanEx:HS_HLTF Genevestigator:Q14527
GermOnline:ENSG00000071794 Uniprot:Q14527
Length = 1009
Score = 216 (81.1 bits), Expect = 8.3e-24, Sum P(4) = 8.3e-24
Identities = 42/102 (41%), Positives = 64/102 (62%)
Query: 901 PLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLR 960
PL + W RV+LDE +I+N Q +A L ++RRW L+GTPIQN++ DL+S FL+
Sbjct: 545 PLHSIRWLRVILDEGHAIRNPNAQQTKAVLDLESERRWVLTGTPIQNSLKDLWSLLSFLK 604
Query: 961 YDPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTK 1002
PF + + I+ P++ G ++LQ+++K I LRRTK
Sbjct: 605 LKPFIDREWWHRTIQRPVTMGDEGGLRRLQSLIKNITLRRTK 646
Score = 136 (52.9 bits), Expect = 8.3e-24, Sum P(4) = 8.3e-24
Identities = 27/83 (32%), Positives = 48/83 (57%)
Query: 755 RVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGS 814
+++ G+ A + + RP TL++CP SVL W ++ + S L+ VY+G
Sbjct: 454 KMLKKGACAVEGSKKTDVEERPRT-TLIICPLSVLSNWIDQFGQHIKSDVHLNFYVYYGP 512
Query: 815 SRTKDPCELAKFDVVITTYSIVS 837
R ++P L+K D+V+TTY+I++
Sbjct: 513 DRIREPALLSKQDIVLTTYNILT 535
Score = 88 (36.0 bits), Expect = 6.2e-19, Sum P(4) = 6.2e-19
Identities = 31/98 (31%), Positives = 46/98 (46%)
Query: 690 GGILADDQGLGKTISTIALILKE----RPPSFRTEDDNKRQLETLNLDEEDNGIQVNGL- 744
GGILADD GLGKT++ IA+IL RP N + E N++++ + N
Sbjct: 289 GGILADDMGLGKTLTAIAVILTNFHDGRPLPIERVKKNLLKKE-YNVNDDSMKLGGNNTS 347
Query: 745 ---DLVKQESDYCRVVPNGSSAKS---FNFVEQAKGRP 776
D + +++ C P+ S K F E + RP
Sbjct: 348 EKADGLSKDASRCSEQPSISDIKEKSKFRMSELSSSRP 385
Score = 69 (29.3 bits), Expect = 8.3e-24, Sum P(4) = 8.3e-24
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 659 PDGVLAVPLLRHQRIALSWMVQKETS 684
P + PLL HQ+ AL+WMV +E S
Sbjct: 232 PAEAIETPLLPHQKQALAWMVSRENS 257
Score = 50 (22.7 bits), Expect = 4.1e-15, Sum P(4) = 4.1e-15
Identities = 22/85 (25%), Positives = 35/85 (41%)
Query: 757 VPNGSSAKSFNFVEQAKGRPAAGTLVVCP----TSVLRQWAEELRNKVTSKGSLSVLVYH 812
+P K N + KGR AG+ V L + K+ KG+ +V
Sbjct: 408 LPQKMKGKLKNVQSETKGRAKAGSSKVIEDVAFACALTSSVPTTKKKMLKKGACAV---E 464
Query: 813 GSSRTKDPCELAKFDVVITTYSIVS 837
GS +T D E + ++I S++S
Sbjct: 465 GSKKT-DVEERPRTTLIICPLSVLS 488
Score = 38 (18.4 bits), Expect = 8.3e-24, Sum P(4) = 8.3e-24
Identities = 8/20 (40%), Positives = 12/20 (60%)
Query: 518 KKELDGVKEDMEAEIKTRSM 537
K E D + ED++ + KT M
Sbjct: 211 KTEFDKLFEDLKEDDKTHEM 230
>ASPGD|ASPL0000056426 [details] [associations]
symbol:AN0044 species:162425 "Emericella nidulans"
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0009650 "UV
protection" evidence=IEA] [GO:0006289 "nucleotide-excision repair"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR014905 Pfam:PF00176 Pfam:PF00271 Pfam:PF08797
PROSITE:PS50089 PROSITE:PS51194 SMART:SM00184 SMART:SM00490
SMART:SM00910 Prosite:PS00518 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 EMBL:BN001308 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 GO:GO:0006281 Gene3D:3.30.40.10 InterPro:IPR013083
GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 EMBL:AACD01000002 KO:K15505 RefSeq:XP_657648.1
ProteinModelPortal:Q5BHD6 STRING:Q5BHD6
EnsemblFungi:CADANIAT00002711 GeneID:2875817 KEGG:ani:AN0044.2
HOGENOM:HOG000040492 OMA:MDPWWSP OrthoDB:EOG4J40R2 Uniprot:Q5BHD6
Length = 1202
Score = 239 (89.2 bits), Expect = 1.5e-23, Sum P(4) = 1.5e-23
Identities = 49/104 (47%), Positives = 69/104 (66%)
Query: 900 GPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFL 959
G L V +FRV+LDEA IKN R++ ARAC+ L+A RW L+GTPI N ++DL+S RFL
Sbjct: 641 GNLFSVDFFRVILDEAHIIKNRRSKTARACYDLKATHRWVLTGTPIVNRLEDLFSLVRFL 700
Query: 960 RYDPFAVYKSFCSMIKVPI-SKNPVKGYKKLQAVLKTIMLRRTK 1002
R +P+ + + + I P SK V+ +Q VL+ ++LRRTK
Sbjct: 701 RVEPWNNFSFWKTFITAPFESKEVVRAISVVQTVLEPLVLRRTK 744
Score = 92 (37.4 bits), Expect = 1.5e-23, Sum P(4) = 1.5e-23
Identities = 18/32 (56%), Positives = 23/32 (71%)
Query: 687 HCSGGILADDQGLGKTISTIALILKER--PPS 716
HC GGILAD+ GLGKTI ++L+ R PP+
Sbjct: 509 HCLGGILADEMGLGKTIEMLSLVHSHRNLPPT 540
Score = 81 (33.6 bits), Expect = 1.5e-23, Sum P(4) = 1.5e-23
Identities = 17/37 (45%), Positives = 24/37 (64%)
Query: 780 TLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSR 816
TLVV P S+L QW E K + GS+ VL+Y+G+ +
Sbjct: 561 TLVVAPMSLLAQWEGEAL-KASRNGSMKVLMYYGNEK 596
Score = 47 (21.6 bits), Expect = 1.5e-23, Sum P(4) = 1.5e-23
Identities = 24/98 (24%), Positives = 38/98 (38%)
Query: 340 KVPAIDYLDAKRQCED---SKNGLPIYGNSLSNITLGDGKRSAQPCTYSHSHSSRTKQMV 396
K PA+D + D S NG P + +G + QP T + + + + +
Sbjct: 31 KSPALDASSSASTHTDPNYSANGSPAQIQTQQEYNFSNGGHATQPATAAGTRTHQAQSP- 89
Query: 397 FAKDEGND-DLFPCWSTVSDSVEPIDEAVGRNSSYHDG 433
A D +D D S V + V P E + + DG
Sbjct: 90 -AHDTLSDFDTEAFVSIVGEQVSP--ETLSQIRKLSDG 124
>POMBASE|SPAC13G6.01c [details] [associations]
symbol:rad8 "ubiquitin-protein ligase E3 Rad8"
species:4896 "Schizosaccharomyces pombe" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0004842 "ubiquitin-protein ligase activity" evidence=ISO]
[GO:0005524 "ATP binding" evidence=IC] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006281
"DNA repair" evidence=IGI;IMP] [GO:0006289 "nucleotide-excision
repair" evidence=IMP] [GO:0006301 "postreplication repair"
evidence=ISO] [GO:0006974 "response to DNA damage stimulus"
evidence=IMP] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0009650 "UV protection" evidence=IMP] [GO:0016567 "protein
ubiquitination" evidence=NAS] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR014905 Pfam:PF00176 Pfam:PF00271
Pfam:PF08797 PROSITE:PS50089 PROSITE:PS51194 SMART:SM00184
SMART:SM00490 SMART:SM00910 PomBase:SPAC13G6.01c Prosite:PS00518
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 EMBL:CU329670
GenomeReviews:CU329670_GR GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
Gene3D:3.30.40.10 InterPro:IPR013083 GO:GO:0004386 GO:GO:0004842
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006289 GO:GO:0006301 GO:GO:0009650 KO:K15505
HOGENOM:HOG000040492 OrthoDB:EOG4J40R2 EMBL:X74615 PIR:S41478
RefSeq:XP_001713034.1 ProteinModelPortal:P36607 STRING:P36607
PRIDE:P36607 EnsemblFungi:SPAC13G6.01c.1 GeneID:3361391
KEGG:spo:SPAC13G6.01c OMA:PCAHRMC NextBio:20811441 Uniprot:P36607
Length = 1133
Score = 239 (89.2 bits), Expect = 1.0e-22, Sum P(5) = 1.0e-22
Identities = 43/102 (42%), Positives = 70/102 (68%)
Query: 902 LAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRY 961
L V WFRVVLDE +I+N ++ A+AC + ++ RW ++GTPI N +DDLYS +F+RY
Sbjct: 645 LFSVHWFRVVLDEGHNIRNRESKTAKACHSISSQNRWVITGTPIVNKLDDLYSLIKFMRY 704
Query: 962 DPFAVYKSFCSMIKVPI-SKNPVKGYKKLQAVLKTIMLRRTK 1002
+P+ Y + + + +P SK+ +K +Q++L+ ++LRRTK
Sbjct: 705 EPWCNYTYWQTFVSLPYQSKDVLKALNVVQSILEFLVLRRTK 746
Score = 79 (32.9 bits), Expect = 1.0e-22, Sum P(5) = 1.0e-22
Identities = 17/32 (53%), Positives = 22/32 (68%)
Query: 690 GGILADDQGLGKTISTIALILKERPPSFRTED 721
GGILAD+ GLGKTI ++LI P F T++
Sbjct: 524 GGILADEMGLGKTIEVLSLIHSR--PCFSTDE 553
Score = 79 (32.9 bits), Expect = 1.0e-22, Sum P(5) = 1.0e-22
Identities = 22/69 (31%), Positives = 35/69 (50%)
Query: 780 TLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKD--PCELAKFD---VVITTYS 834
TLVV P S+L QW E KV+ ++Y+GS + D C + ++IT+Y
Sbjct: 572 TLVVAPMSLLDQWHSEAC-KVSQGTKFRSMIYYGSEKPLDLKSCVIDTSTAPLIIITSYG 630
Query: 835 IVSMEVPKQ 843
++ E +Q
Sbjct: 631 VLLSEFSQQ 639
Score = 49 (22.3 bits), Expect = 1.0e-22, Sum P(5) = 1.0e-22
Identities = 17/49 (34%), Positives = 24/49 (48%)
Query: 636 SDERLIL--QVAMQGISQPNAEASAPDGVLAVPLLRHQRIALSWMVQKE 682
SD+ IL +V G P+A + A+ L +Q+ AL WM KE
Sbjct: 415 SDQLAILYDKVKTSGAELPSAPKPS---TFALDLREYQKQALYWMCCKE 460
Score = 45 (20.9 bits), Expect = 1.0e-22, Sum P(5) = 1.0e-22
Identities = 10/32 (31%), Positives = 17/32 (53%)
Query: 391 RTKQMVFAKDEGNDDLFPCWSTVSDSVEPIDE 422
+T + A+DE N DL P S+ D + + +
Sbjct: 387 KTSSLPEARDESNSDLTP--SSTEDEEDVVSD 416
Score = 39 (18.8 bits), Expect = 4.1e-22, Sum P(5) = 4.1e-22
Identities = 14/47 (29%), Positives = 23/47 (48%)
Query: 524 VKEDME-AEIKTRSMASHLLKLS--PESIQSNSSDCK-SHVDDEPDI 566
++ D+E K +LK S PE+ ++SD S +DE D+
Sbjct: 367 LEPDLEDCNTKESIHIDDILKTSSLPEARDESNSDLTPSSTEDEEDV 413
Score = 37 (18.1 bits), Expect = 6.5e-22, Sum P(5) = 6.5e-22
Identities = 10/28 (35%), Positives = 15/28 (53%)
Query: 570 EDISQPARSNQSLVLGKTLSMNRSACSN 597
+ +S ++S S K LS+N S SN
Sbjct: 234 QKLSIKSQSRNSRKKSKLLSINSSCYSN 261
>ASPGD|ASPL0000008250 [details] [associations]
symbol:AN10794 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR014905 Pfam:PF00176 Pfam:PF00271 Pfam:PF08797
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003677
GO:GO:0008270 EMBL:BN001301 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EnsemblFungi:CADANIAT00006774
OMA:LADMMGL Uniprot:C8V1S3
Length = 1170
Score = 182 (69.1 bits), Expect = 2.1e-21, Sum P(2) = 2.1e-21
Identities = 74/269 (27%), Positives = 110/269 (40%)
Query: 584 LGKTLSMNRS-ACSNHSVALGKPVVTSQHSSYSDYPGY-PGVPLTGLGGMKSKASDERLI 641
+G L N + SV G PV P Y P G+ + +
Sbjct: 385 VGNYLGQNNVWLATPFSVEQGVPVFNPHAERRRLQPSYAPTGSQRNRSGVNYEVRSAEEV 444
Query: 642 LQVAMQGISQ----PNAEASAPDGVLAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQ 697
M+ Q N P V+ PLLRHQ+ AL +M +KE G D+
Sbjct: 445 TDAVMKMFDQLQSADNLPEMDPPAVVTTPLLRHQKQALWFMTEKEAPRKF--GPKEEDNN 502
Query: 698 GLGKTISTIALILKERP--PSFRTEDDNKRQLETLNLDEEDNGIQVNGLDLV----KQES 751
L + + K R + + + L L D G ++ L LV Q
Sbjct: 503 SLWREEYSANGTKKYREVISGIVLDQEPPQSLGGLLADMMGLGKTLSILSLVISSLAQAQ 562
Query: 752 DYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVY 811
++ R++P KS + K TL+V P S + W +++ + G+L+ V+
Sbjct: 563 EWARMIPQPGLVKSRPGIRNTKT-----TLLVAPLSTVNNWVSQVKEHLRD-GALTSYVF 616
Query: 812 HGSSRTKDPCELAKFDVVITTYSIVSMEV 840
HGSSRT EL+K+D+VITTYSIV E+
Sbjct: 617 HGSSRTTSVDELSKYDLVITTYSIVLSEL 645
Score = 164 (62.8 bits), Expect = 2.1e-21, Sum P(2) = 2.1e-21
Identities = 37/104 (35%), Positives = 54/104 (51%)
Query: 899 AGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRF 958
+ PL K+ FR+VLDEA +I+ +A + L A+RRW ++GTPIQN +DDL S +F
Sbjct: 655 SSPLTKMNMFRIVLDEAHTIREQSAAQTQAIFRLNAQRRWSVTGTPIQNRLDDLLSVTKF 714
Query: 959 LRYDPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTK 1002
L P+ F I L+ ++ + LRR K
Sbjct: 715 LGIYPYDDRSRFNMHILSRFKTGDATVLASLRVLVDSFTLRRVK 758
Score = 47 (21.6 bits), Expect = 2.4e-07, Sum P(2) = 2.4e-07
Identities = 18/54 (33%), Positives = 26/54 (48%)
Query: 41 QPDRVKSSPGDLSLRNLSQDELVQDVGSHSNLQLQSGFKGDMRD--IATYPLYG 92
QP VKS PG +RN LV + + +N Q K +RD + +Y +G
Sbjct: 570 QPGLVKSRPG---IRNTKTTLLVAPLSTVNNWVSQ--VKEHLRDGALTSYVFHG 618
Score = 37 (18.1 bits), Expect = 3.2e-08, Sum P(2) = 3.2e-08
Identities = 6/30 (20%), Positives = 15/30 (50%)
Query: 964 FAVYKSFCSMIKVPISKNPVKGYKKLQAVL 993
F+ + S +I++ + + GY +L +
Sbjct: 1020 FSAWTSHLDLIEIALRDQGLTGYTRLDGTM 1049
>UNIPROTKB|G4NIT2 [details] [associations]
symbol:MGG_12155 "Uncharacterized protein" species:242507
"Magnaporthe oryzae 70-15" [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50089 PROSITE:PS51194
SMART:SM00184 SMART:SM00490 Prosite:PS00518 GO:GO:0005524
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10
InterPro:IPR013083 GO:GO:0004386 EMBL:CM001236 InterPro:IPR017907
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
RefSeq:XP_003719705.1 ProteinModelPortal:G4NIT2
EnsemblFungi:MGG_12155T0 GeneID:2677543 KEGG:mgr:MGG_12155
Uniprot:G4NIT2
Length = 1430
Score = 212 (79.7 bits), Expect = 5.6e-21, Sum P(3) = 5.6e-21
Identities = 45/96 (46%), Positives = 60/96 (62%)
Query: 905 VGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPF 964
V W RVVLDEA +IKNH ++ ++AC LR+K RW LSGTPI N I++LY Y RFLR +
Sbjct: 665 VDWHRVVLDEAHAIKNHLSRTSKACVHLRSKHRWALSGTPIHNTIEELYPYMRFLRVEWA 724
Query: 965 AVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRR 1000
A K F N + +L AV+ ++M+RR
Sbjct: 725 ADMKDFKKKFGGTPGDNDSEN-SRLAAVVPSLMIRR 759
Score = 104 (41.7 bits), Expect = 5.6e-21, Sum P(3) = 5.6e-21
Identities = 21/51 (41%), Positives = 31/51 (60%)
Query: 663 LAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKER 713
+ PL HQ + + +M+ KE S L GGILAD GLGKT+ +A + + +
Sbjct: 519 MKTPLFNHQLVGVHFMLGKEFSPLGPYGGILADQMGLGKTVQMLACMAQNQ 569
Score = 77 (32.2 bits), Expect = 5.6e-21, Sum P(3) = 5.6e-21
Identities = 20/72 (27%), Positives = 35/72 (48%)
Query: 772 AKGRPAAGTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKD--PCELAKFDVV 829
A+ + TL+V P + + QW EL+ T + ++H S + ++ P L K VV
Sbjct: 566 AQNQGEGPTLIVAPAAAIEQWKSELKKHCT----FAKRIWHYSDKNENQIPEVLKKEKVV 621
Query: 830 ITTYSIVSMEVP 841
I +Y ++ P
Sbjct: 622 IASYQAIAKAFP 633
Score = 46 (21.3 bits), Expect = 4.9e-15, Sum P(3) = 4.9e-15
Identities = 24/107 (22%), Positives = 47/107 (43%)
Query: 652 PNAEASAPDGVLAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQ-----GLGKTISTI 706
P+AE ++P V+ L++ + L +K+ +GG L+ ++ + IS
Sbjct: 202 PDAERASPAAVVRHNLVKMRNKYLRLTAKKDNLKAKEAGGPLSQEEIKLLEQIESEISEK 261
Query: 707 ALILKERPPSFRTEDDNKRQLETLNLDEEDNG-IQVNGLDLVKQESD 752
IL + DD+ + + D+ NG ++ DL +E+D
Sbjct: 262 EKILNDNQGDDDFSDDDDDDFDGSD-DDAPNGHVEEIENDLDGEEND 307
>UNIPROTKB|G4MPA7 [details] [associations]
symbol:MGG_07014 "DNA repair protein RAD16" species:242507
"Magnaporthe oryzae 70-15" [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR001841 InterPro:IPR018957 InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50089
PROSITE:PS51194 SMART:SM00184 SMART:SM00490 Pfam:PF00097
Prosite:PS00518 GO:GO:0005524 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR013083 GO:GO:0004386
EMBL:CM001231 InterPro:IPR017907 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 KO:K15083 RefSeq:XP_003709772.1
ProteinModelPortal:G4MPA7 EnsemblFungi:MGG_07014T0 GeneID:2685187
KEGG:mgr:MGG_07014 Uniprot:G4MPA7
Length = 986
Score = 180 (68.4 bits), Expect = 7.5e-21, Sum P(5) = 7.5e-21
Identities = 37/87 (42%), Positives = 54/87 (62%)
Query: 884 SKQKKG---PDGLLLDIVAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCL 940
+KQ+KG DG+ + L + + RV+LDEA IK+ T ++AC L+ RWCL
Sbjct: 495 AKQEKGVSKKDGIYKE--KSLLHSIDFHRVILDEAHYIKSRTTMTSKACLALKTTYRWCL 552
Query: 941 SGTPIQNAIDDLYSYFRFLRYDPFAVY 967
+GTP+QN I + +S RFL+ +PFA Y
Sbjct: 553 TGTPLQNRIGEFFSLVRFLKIEPFANY 579
Score = 104 (41.7 bits), Expect = 7.5e-21, Sum P(5) = 7.5e-21
Identities = 25/70 (35%), Positives = 41/70 (58%)
Query: 780 TLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSS-RTKD--PCELAKFDVVITTYSIV 836
+LV+ P L QW E+++ ++G+L +VYHGS+ +TK EL +DV+I +Y+ +
Sbjct: 433 SLVLAPPVALMQWMSEIQSY--TEGTLKTIVYHGSNAKTKKMTKAELKGYDVIIMSYNSL 490
Query: 837 SMEVPKQPLG 846
KQ G
Sbjct: 491 QSMYAKQEKG 500
Score = 87 (35.7 bits), Expect = 7.5e-21, Sum P(5) = 7.5e-21
Identities = 21/59 (35%), Positives = 31/59 (52%)
Query: 656 ASAPDGVLAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKERP 714
AS P + + L Q L+WM K GG+L D+ GLGKTI ++L++ + P
Sbjct: 373 ASQPTNI-SRNLKPFQLQGLAWM--KAMEQTEWKGGLLGDEMGLGKTIQAVSLVMSDWP 428
Score = 61 (26.5 bits), Expect = 7.5e-21, Sum P(5) = 7.5e-21
Identities = 57/244 (23%), Positives = 95/244 (38%)
Query: 364 GNSLS-NITL---GDGKRSAQPCTYSHSHSSRTK-QMVFAKDEGNDDLFPCWSTVSDSVE 418
G+ L NI L D K+ + YS + +S+ K V DE D P + ++ ++
Sbjct: 92 GSRLEINIPLQPPADSKKVLRKSVYSLNGASKRKWNEVDDSDEELSDSSPD-AVLARRLQ 150
Query: 419 PIDEAVGRNSSYHDGCNSFPFKDSGQSFIGLSPSLLSQNQVVHAKEEHEDLI-------L 471
+E SS ++ SG S S L Q VVH + +D++
Sbjct: 151 KAEETDFTGSS-----SAKQAMYSGTSSTRRSTRSLKQRPVVHDLDSEDDVLTASIKSKF 205
Query: 472 ESKR----ARFCQEICDGSSSRSPIDGRHL----SLNLNGSRQYFPYAQPSTLNKKELDG 523
+SKR A+F + DGS+ S D ++ +NGS F +T +K+
Sbjct: 206 KSKRQATPAKFVADSEDGSAFSSAPDANDSDQADNIAVNGSSDEFDDEVQTTKPRKQAHR 265
Query: 524 VKEDMEAEIKTRSMASHLLKLSPESIQSNSSDCKSHVDDEPDICILEDISQPARSNQSLV 583
V I R L +S +S+ D + D + + S+ R+ +
Sbjct: 266 VDRRASQPIPKRRKIVPRATLVLDSESESSAPPSEWTDSDDDEGLGDAPSETPRAVTRVR 325
Query: 584 LGKT 587
G+T
Sbjct: 326 RGRT 329
Score = 41 (19.5 bits), Expect = 7.5e-21, Sum P(5) = 7.5e-21
Identities = 8/19 (42%), Positives = 13/19 (68%)
Query: 984 KGYKKLQAVLKTIMLRRTK 1002
+ ++KL+ + IMLRR K
Sbjct: 632 EAFRKLRLLTSKIMLRRQK 650
Score = 41 (19.5 bits), Expect = 3.1e-14, Sum P(4) = 3.1e-14
Identities = 9/19 (47%), Positives = 13/19 (68%)
Query: 678 MVQKETSSLHCSGGILADD 696
M ++ SSL +G +LADD
Sbjct: 1 MTRRTRSSLARAGKVLADD 19
>GENEDB_PFALCIPARUM|PFL2440w [details] [associations]
symbol:PFL2440w "DNA repair protein rhp16,
putative" species:5833 "Plasmodium falciparum" [GO:0006289
"nucleotide-excision repair" evidence=ISS] [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] InterPro:IPR001841
InterPro:IPR000330 InterPro:IPR001510 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 Pfam:PF00645 Pfam:PF13639 PROSITE:PS50064
PROSITE:PS51194 SMART:SM00184 SMART:SM00490 GO:GO:0005524
GO:GO:0003677 GO:GO:0008270 EMBL:AE014188 Gene3D:3.30.40.10
InterPro:IPR013083 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006289 KO:K15083 RefSeq:XP_001350892.1
ProteinModelPortal:Q8I4S6 IntAct:Q8I4S6 MINT:MINT-1665888
EnsemblProtists:PFL2440w:mRNA GeneID:811540 KEGG:pfa:PFL2440w
EuPathDB:PlasmoDB:PF3D7_1250800 HOGENOM:HOG000283588 OMA:KKQLVFD
ProtClustDB:CLSZ2514966 Uniprot:Q8I4S6
Length = 1647
Score = 181 (68.8 bits), Expect = 7.9e-21, Sum P(2) = 7.9e-21
Identities = 39/91 (42%), Positives = 56/91 (61%)
Query: 884 SKQKKGPDGL-LLDIVAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRA-KRRWCLS 941
SK+KK + + + D A L ++ W R++LDEA IKN T ++ L+ RWCL+
Sbjct: 1013 SKEKKKRENMKIFDESA--LHQIYWNRIILDEAHRIKNRNTSTTQSILNLKCCGYRWCLT 1070
Query: 942 GTPIQNAIDDLYSYFRFLRYDPFAVYKSFCS 972
GTP+QN I +LYS RF+ + P+A Y FCS
Sbjct: 1071 GTPLQNRISELYSLIRFIEFYPYAYY--FCS 1099
Score = 163 (62.4 bits), Expect = 7.9e-21, Sum P(2) = 7.9e-21
Identities = 48/169 (28%), Positives = 87/169 (51%)
Query: 681 KETSS-LHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGI 739
K +SS L+C +DD + K S ++IL E + + ++K + N + +N +
Sbjct: 343 KNSSSILYCKNST-SDDLKV-KEESDCSVILIESDDTQNEKMNHKNDVMAENKIDTENVL 400
Query: 740 QVNGLDLVKQESDYCRVVPNG------SSAKSFNFVEQAKGRPAAGTLVVCPTSVLRQWA 793
V + +K+E + + N S+ K +F+ + KG+ TL++ P + + QW
Sbjct: 401 NVKKIKNIKKECVNNKKIKNNNNNNNKSNFKKNDFINKLKGQ----TLIIAPVAAVMQWK 456
Query: 794 EELRNKVTSKGSLSVLVYHGSSRTKDPCELAKFDVVITTYSIVSMEVPK 842
E+ K + L+V VYHG+S+ EL K+D+VIT+Y++V + K
Sbjct: 457 SEIE-KFVDENILNVYVYHGNSKIISDEELIKYDIVITSYAVVEVNFRK 504
Score = 119 (46.9 bits), Expect = 3.0e-16, Sum P(2) = 3.0e-16
Identities = 33/81 (40%), Positives = 47/81 (58%)
Query: 663 LAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALIL-------KERPP 715
L LL++Q+ + WM+ +E S++ GGILAD+ G+GKTI I LIL KE
Sbjct: 222 LKYDLLQYQKEGIYWMINQEMSNV--KGGILADEMGMGKTIQAITLILCQKLNKLKEIKK 279
Query: 716 SFRTEDDNKRQLETLNLDEED 736
R++D +K + N DEED
Sbjct: 280 DERSDDHDKVGYK--NDDEED 298
Score = 51 (23.0 bits), Expect = 3.3e-09, Sum P(2) = 3.3e-09
Identities = 22/92 (23%), Positives = 39/92 (42%)
Query: 528 MEAEIKTRSMASHLLKLSPESIQSNS--SDCKSHVDDEPDICILEDISQPARSNQSLVLG 585
M+ + +TR AS+ K + + +NS SD KS+ + D DI + +
Sbjct: 878 MKIKGETREYASNKGKNNNDDDNNNSYYSDAKSYTSESSDESYQGDICSKKKEPKKNTKS 937
Query: 586 KTLSMNRSACSNHSVALGKPVVTSQHSSYSDY 617
S +S C + S+ K + + +DY
Sbjct: 938 IRRSQRKSYCKS-SLESEKKEESDNSYNTNDY 968
Score = 49 (22.3 bits), Expect = 4.2e-07, Sum P(2) = 4.2e-07
Identities = 21/62 (33%), Positives = 27/62 (43%)
Query: 950 DDLYSYFRFLRYDPFAVYKSFCSMIKVPISKNPVKG-------YKKLQAVLKTIMLRRTK 1002
D+ Y YF + + F I PI +G Y K + VL I+LRRTK
Sbjct: 1114 DNKYCYF--CNHSRINHFNYFNKRILKPIQSFGYRGEGLSGMSYLKNE-VLDKILLRRTK 1170
Query: 1003 GE 1004
GE
Sbjct: 1171 GE 1172
Score = 44 (20.5 bits), Expect = 1.8e-08, Sum P(2) = 1.8e-08
Identities = 18/81 (22%), Positives = 37/81 (45%)
Query: 425 GRNSSYHDGCNSFPFKDSGQSFIGLSPSLLSQNQVVHAKEE---HEDLILESKRARFCQE 481
G+N++ D NS+ + D+ +S+ S Q + K+E + I S+R +C+
Sbjct: 892 GKNNNDDDNNNSY-YSDA-KSYTSESSDESYQGDICSKKKEPKKNTKSIRRSQRKSYCKS 949
Query: 482 ICDGSSSRSPIDGRHLSLNLN 502
+ S + D + + + N
Sbjct: 950 SLE-SEKKEESDNSYNTNDYN 969
>UNIPROTKB|Q8I4S6 [details] [associations]
symbol:PFL2440w "DNA repair protein rhp16, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0006289
"nucleotide-excision repair" evidence=ISS] InterPro:IPR001841
InterPro:IPR000330 InterPro:IPR001510 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 Pfam:PF00645 Pfam:PF13639 PROSITE:PS50064
PROSITE:PS51194 SMART:SM00184 SMART:SM00490 GO:GO:0005524
GO:GO:0003677 GO:GO:0008270 EMBL:AE014188 Gene3D:3.30.40.10
InterPro:IPR013083 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006289 KO:K15083 RefSeq:XP_001350892.1
ProteinModelPortal:Q8I4S6 IntAct:Q8I4S6 MINT:MINT-1665888
EnsemblProtists:PFL2440w:mRNA GeneID:811540 KEGG:pfa:PFL2440w
EuPathDB:PlasmoDB:PF3D7_1250800 HOGENOM:HOG000283588 OMA:KKQLVFD
ProtClustDB:CLSZ2514966 Uniprot:Q8I4S6
Length = 1647
Score = 181 (68.8 bits), Expect = 7.9e-21, Sum P(2) = 7.9e-21
Identities = 39/91 (42%), Positives = 56/91 (61%)
Query: 884 SKQKKGPDGL-LLDIVAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRA-KRRWCLS 941
SK+KK + + + D A L ++ W R++LDEA IKN T ++ L+ RWCL+
Sbjct: 1013 SKEKKKRENMKIFDESA--LHQIYWNRIILDEAHRIKNRNTSTTQSILNLKCCGYRWCLT 1070
Query: 942 GTPIQNAIDDLYSYFRFLRYDPFAVYKSFCS 972
GTP+QN I +LYS RF+ + P+A Y FCS
Sbjct: 1071 GTPLQNRISELYSLIRFIEFYPYAYY--FCS 1099
Score = 163 (62.4 bits), Expect = 7.9e-21, Sum P(2) = 7.9e-21
Identities = 48/169 (28%), Positives = 87/169 (51%)
Query: 681 KETSS-LHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGI 739
K +SS L+C +DD + K S ++IL E + + ++K + N + +N +
Sbjct: 343 KNSSSILYCKNST-SDDLKV-KEESDCSVILIESDDTQNEKMNHKNDVMAENKIDTENVL 400
Query: 740 QVNGLDLVKQESDYCRVVPNG------SSAKSFNFVEQAKGRPAAGTLVVCPTSVLRQWA 793
V + +K+E + + N S+ K +F+ + KG+ TL++ P + + QW
Sbjct: 401 NVKKIKNIKKECVNNKKIKNNNNNNNKSNFKKNDFINKLKGQ----TLIIAPVAAVMQWK 456
Query: 794 EELRNKVTSKGSLSVLVYHGSSRTKDPCELAKFDVVITTYSIVSMEVPK 842
E+ K + L+V VYHG+S+ EL K+D+VIT+Y++V + K
Sbjct: 457 SEIE-KFVDENILNVYVYHGNSKIISDEELIKYDIVITSYAVVEVNFRK 504
Score = 119 (46.9 bits), Expect = 3.0e-16, Sum P(2) = 3.0e-16
Identities = 33/81 (40%), Positives = 47/81 (58%)
Query: 663 LAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALIL-------KERPP 715
L LL++Q+ + WM+ +E S++ GGILAD+ G+GKTI I LIL KE
Sbjct: 222 LKYDLLQYQKEGIYWMINQEMSNV--KGGILADEMGMGKTIQAITLILCQKLNKLKEIKK 279
Query: 716 SFRTEDDNKRQLETLNLDEED 736
R++D +K + N DEED
Sbjct: 280 DERSDDHDKVGYK--NDDEED 298
Score = 51 (23.0 bits), Expect = 3.3e-09, Sum P(2) = 3.3e-09
Identities = 22/92 (23%), Positives = 39/92 (42%)
Query: 528 MEAEIKTRSMASHLLKLSPESIQSNS--SDCKSHVDDEPDICILEDISQPARSNQSLVLG 585
M+ + +TR AS+ K + + +NS SD KS+ + D DI + +
Sbjct: 878 MKIKGETREYASNKGKNNNDDDNNNSYYSDAKSYTSESSDESYQGDICSKKKEPKKNTKS 937
Query: 586 KTLSMNRSACSNHSVALGKPVVTSQHSSYSDY 617
S +S C + S+ K + + +DY
Sbjct: 938 IRRSQRKSYCKS-SLESEKKEESDNSYNTNDY 968
Score = 49 (22.3 bits), Expect = 4.2e-07, Sum P(2) = 4.2e-07
Identities = 21/62 (33%), Positives = 27/62 (43%)
Query: 950 DDLYSYFRFLRYDPFAVYKSFCSMIKVPISKNPVKG-------YKKLQAVLKTIMLRRTK 1002
D+ Y YF + + F I PI +G Y K + VL I+LRRTK
Sbjct: 1114 DNKYCYF--CNHSRINHFNYFNKRILKPIQSFGYRGEGLSGMSYLKNE-VLDKILLRRTK 1170
Query: 1003 GE 1004
GE
Sbjct: 1171 GE 1172
Score = 44 (20.5 bits), Expect = 1.8e-08, Sum P(2) = 1.8e-08
Identities = 18/81 (22%), Positives = 37/81 (45%)
Query: 425 GRNSSYHDGCNSFPFKDSGQSFIGLSPSLLSQNQVVHAKEE---HEDLILESKRARFCQE 481
G+N++ D NS+ + D+ +S+ S Q + K+E + I S+R +C+
Sbjct: 892 GKNNNDDDNNNSY-YSDA-KSYTSESSDESYQGDICSKKKEPKKNTKSIRRSQRKSYCKS 949
Query: 482 ICDGSSSRSPIDGRHLSLNLN 502
+ S + D + + + N
Sbjct: 950 SLE-SEKKEESDNSYNTNDYN 969
>CGD|CAL0006085 [details] [associations]
symbol:RAD16 species:5476 "Candida albicans" [GO:0000113
"nucleotide-excision repair factor 4 complex" evidence=IEA]
[GO:0031463 "Cul3-RING ubiquitin ligase complex" evidence=IEA]
[GO:0003684 "damaged DNA binding" evidence=IEA] [GO:0008094
"DNA-dependent ATPase activity" evidence=IEA] [GO:0004842
"ubiquitin-protein ligase activity" evidence=IEA] [GO:0034644
"cellular response to UV" evidence=IEA] [GO:0000715
"nucleotide-excision repair, DNA damage recognition" evidence=IEA]
[GO:0042787 "protein ubiquitination involved in ubiquitin-dependent
protein catabolic process" evidence=IEA] InterPro:IPR001841
InterPro:IPR018957 InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50089 PROSITE:PS51194
SMART:SM00184 SMART:SM00490 CGD:CAL0006085 Pfam:PF00097
Prosite:PS00518 GO:GO:0005524 EMBL:AACQ01000017 EMBL:AACQ01000015
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10
InterPro:IPR013083 GO:GO:0004386 InterPro:IPR017907 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 KO:K15083
RefSeq:XP_721196.1 RefSeq:XP_721468.1 ProteinModelPortal:Q5AI84
STRING:Q5AI84 GeneID:3636874 GeneID:3637198 KEGG:cal:CaO19.10486
KEGG:cal:CaO19.2969 Uniprot:Q5AI84
Length = 852
Score = 182 (69.1 bits), Expect = 5.6e-20, Sum P(5) = 5.6e-20
Identities = 35/85 (41%), Positives = 56/85 (65%)
Query: 888 KGPDGLLLDIVAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQN 947
K +GL+ + A + + ++RV+LDEA +IK+ + +RA L K+RWCL+GTP+QN
Sbjct: 356 KRKNGLVKEKSA--IHNIEFYRVILDEAHNIKDRNSNTSRAAGKLNTKKRWCLTGTPLQN 413
Query: 948 AIDDLYSYFRFLRYDPFAVYKSFCS 972
I ++YS R+++ DPF Y FC+
Sbjct: 414 RIGEMYSLIRYMKLDPFHSY--FCT 436
Score = 144 (55.7 bits), Expect = 5.6e-20, Sum P(5) = 5.6e-20
Identities = 43/122 (35%), Positives = 69/122 (56%)
Query: 726 QLETLN-LDEEDNGIQVNGLDLVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVC 784
QLE LN L ++++G + NG ++ E + + + F +++KG P LV+
Sbjct: 244 QLEGLNWLIKQEDG-EFNG-GILADEMGMGKTI---QTIGLFMH-DRSKG-P---NLVIG 293
Query: 785 PTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCELAKFDVVITTYSIVSMEVPKQP 844
PT L QW E+ K T G L VL+YHGS+R+ EL+++DV++T+YS++ KQ
Sbjct: 294 PTVALMQWKNEIE-KHTEPGMLKVLLYHGSNRSNSIQELSQYDVILTSYSVLESVYRKQN 352
Query: 845 LG 846
G
Sbjct: 353 YG 354
Score = 112 (44.5 bits), Expect = 8.6e-17, Sum P(5) = 8.6e-17
Identities = 24/58 (41%), Positives = 36/58 (62%)
Query: 656 ASAPDGVLAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKER 713
A P G + + LL Q L+W++++E + GGILAD+ G+GKTI TI L + +R
Sbjct: 230 AEHPPG-MTIKLLPFQLEGLNWLIKQEDGEFN--GGILADEMGMGKTIQTIGLFMHDR 284
Score = 52 (23.4 bits), Expect = 5.6e-20, Sum P(5) = 5.6e-20
Identities = 10/22 (45%), Positives = 17/22 (77%)
Query: 983 VKGYKKLQAVLKTIMLRRTKGE 1004
++G+ L+++L +MLRRTK E
Sbjct: 485 LEGFNNLRSLLDHVMLRRTKIE 506
Score = 45 (20.9 bits), Expect = 5.6e-20, Sum P(5) = 5.6e-20
Identities = 16/74 (21%), Positives = 24/74 (32%)
Query: 335 KGSMLKVPAIDYLDAKRQCEDSKNGLPIYGNSLSNITLGDGKRSAQPCTYSHSHSSRTKQ 394
K AID D D +P+ GKR+ + S+ RT
Sbjct: 144 KNGSTSAEAIDLADDLDLNNDPDENVPLASRKAPKKRAKGGKRTKKEPKPKMSYYERTTN 203
Query: 395 MVFAKDEGNDDLFP 408
+F ++FP
Sbjct: 204 RLFEHHPSLKEVFP 217
Score = 37 (18.1 bits), Expect = 5.6e-20, Sum P(5) = 5.6e-20
Identities = 8/23 (34%), Positives = 12/23 (52%)
Query: 13 VSAADEFADDQGLSIDMDTLLGI 35
+S A+ D + SID DT +
Sbjct: 50 ISYAESSDDQESDSIDSDTFANV 72
>TAIR|locus:2064786 [details] [associations]
symbol:AT2G40770 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM] [GO:0008270 "zinc ion binding"
evidence=IEA] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR013026
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50089 PROSITE:PS50293
PROSITE:PS51194 SMART:SM00184 SMART:SM00249 SMART:SM00490
GO:GO:0005524 EMBL:CP002685 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 GO:GO:0004386 InterPro:IPR019786
PROSITE:PS01359 InterPro:IPR014001 SMART:SM00487 KO:K15710
OMA:NVESLYY IPI:IPI00517573 RefSeq:NP_181609.4 UniGene:At.25019
UniGene:At.27873 ProteinModelPortal:F4II36 PRIDE:F4II36
EnsemblPlants:AT2G40770.1 GeneID:818674 KEGG:ath:AT2G40770
Uniprot:F4II36
Length = 1664
Score = 193 (73.0 bits), Expect = 1.4e-19, Sum P(4) = 1.4e-19
Identities = 34/106 (32%), Positives = 59/106 (55%)
Query: 897 IVAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYF 956
++ PL ++ W+R+ LDEAQ ++++ L K RWC++GTPIQ +DDL+
Sbjct: 590 VIPTPLTRIFWWRICLDEAQMVESNAAAATEMALRLYTKHRWCITGTPIQRKLDDLFGLL 649
Query: 957 RFLRYDPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTK 1002
+FL+ +PF V + + +I+ P + K + K +M R +K
Sbjct: 650 KFLKANPFDVSRWWIEVIRDPYERRDTKAMEFTHKFFKQVMWRSSK 695
Score = 104 (41.7 bits), Expect = 1.4e-19, Sum P(4) = 1.4e-19
Identities = 24/68 (35%), Positives = 39/68 (57%)
Query: 780 TLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHG---SSRTKDPC----ELAKFDVVITT 832
TL+VCP +L QW E+ + T GSL +Y G +S +++P EL D+V+TT
Sbjct: 502 TLIVCPAPILPQWHSEI-TRHTRLGSLITCIYEGVRNASLSEEPMIDITELLNADIVLTT 560
Query: 833 YSIVSMEV 840
Y ++ ++
Sbjct: 561 YDVLKEDL 568
Score = 82 (33.9 bits), Expect = 1.4e-19, Sum P(4) = 1.4e-19
Identities = 17/35 (48%), Positives = 21/35 (60%)
Query: 682 ETSSLHCSGGILADDQGLGKTISTIALILKERPPS 716
E S GGILAD+ GLGKT+ +A I R P+
Sbjct: 349 EYFSPRIQGGILADEMGLGKTVELLACIFSHRKPA 383
Score = 50 (22.7 bits), Expect = 1.4e-19, Sum P(4) = 1.4e-19
Identities = 14/38 (36%), Positives = 20/38 (52%)
Query: 647 QGISQPNAEASAPDGVL-AVPLLR-HQRIALSWMVQKE 682
+ I +A D + +P LR +QR A WMVQ+E
Sbjct: 266 EAIKPSKTDAMLGDDIADLLPELRPYQRRAAYWMVQRE 303
>FB|FBgn0037531 [details] [associations]
symbol:CG10445 species:7227 "Drosophila melanogaster"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=IMP] [GO:0005634 "nucleus" evidence=IC]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 EMBL:AE014297 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0000381
GeneTree:ENSGT00700000104545 FlyBase:FBgn0037531 GenomeRNAi:40938
NextBio:821377 RefSeq:NP_001246974.1 RefSeq:NP_649751.2
UniGene:Dm.24034 ProteinModelPortal:Q9VHY2 IntAct:Q9VHY2
EnsemblMetazoa:FBtr0300685 EnsemblMetazoa:FBtr0304704 GeneID:40938
KEGG:dme:Dmel_CG10445 UCSC:CG10445-RA InParanoid:Q9VHY2 OMA:NLNVANH
OrthoDB:EOG40ZPCJ Bgee:Q9VHY2 Uniprot:Q9VHY2
Length = 945
Score = 164 (62.8 bits), Expect = 2.4e-18, Sum P(2) = 2.4e-18
Identities = 37/102 (36%), Positives = 60/102 (58%)
Query: 901 PLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLR 960
PL V W RV+LDEA I+N +T + LRA W L+GTP+QN D+++ RF+
Sbjct: 440 PLFAVYWNRVILDEAHIIRNSKTNCCNSVCQLRAHCHWALTGTPVQNRGVDVFALLRFVN 499
Query: 961 YDPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTK 1002
F + + K ++++ + G+++L ++K +MLRRTK
Sbjct: 500 VPNFQDLQQW----KKNLNESML-GHRRLNFIIKPLMLRRTK 536
Score = 157 (60.3 bits), Expect = 7.5e-18, Sum P(3) = 7.5e-18
Identities = 43/133 (32%), Positives = 72/133 (54%)
Query: 714 PPSFRTEDDNKRQLETLN-LDEEDNGIQVNGLDLVKQESDYCRVVPNGSSAKSFNFVEQ- 771
PP RT +++ LD++DN + + ++ D P S E
Sbjct: 304 PPEKRTCHVKTKKINQFRILDDDDNDAGDKAV-VEDEQKDLLAKTPEPEVFSSDEEEEHL 362
Query: 772 AKGR-PAAGTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCELAK-FDVV 829
+ GR P+A TLVVCP SV+ QWA E+ +KV ++ ++ VL +HG +R + E + +D+V
Sbjct: 363 SNGRYPSANTLVVCPMSVMCQWAHEVASKV-AQNAIRVLTFHGPNRHEIGIEAFRSYDLV 421
Query: 830 ITTYSIVSMEVPK 842
IT+Y++V E+ +
Sbjct: 422 ITSYNLVVNELKR 434
Score = 151 (58.2 bits), Expect = 2.4e-18, Sum P(2) = 2.4e-18
Identities = 36/78 (46%), Positives = 47/78 (60%)
Query: 662 VLAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTED 721
+L V LL+HQ+ L WM +E + SGGILADD GLGKT+S IALIL R +
Sbjct: 204 LLLVRLLKHQQSCLKWMQFRERQKI--SGGILADDMGLGKTLSMIALILASEETKNRKRE 261
Query: 722 DNKRQLETLNLDEEDNGI 739
+ K+ L TL +E N +
Sbjct: 262 EKKKAL-TLKWTQEFNRV 278
Score = 47 (21.6 bits), Expect = 5.5e-06, Sum P(3) = 5.5e-06
Identities = 15/41 (36%), Positives = 22/41 (53%)
Query: 973 MIKVPISKNPVKGYKKLQAVLKTI----MLRRTKGEDCLLY 1009
+I V +SK + Y+ L A+ K I +L+R KG L Y
Sbjct: 555 LICVQLSKTEMAVYQILSAISKKIFTQFLLQREKGNSDLNY 595
Score = 37 (18.1 bits), Expect = 7.5e-18, Sum P(3) = 7.5e-18
Identities = 7/20 (35%), Positives = 14/20 (70%)
Query: 297 LLSSEETATKPKDEEGEFTT 316
+L+SEET + ++E+ + T
Sbjct: 249 ILASEETKNRKREEKKKALT 268
Score = 37 (18.1 bits), Expect = 7.5e-18, Sum P(3) = 7.5e-18
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 20 ADDQGLSIDMDTLLGILEEEKQPDR 44
ADD GL + + IL E+ +R
Sbjct: 234 ADDMGLGKTLSMIALILASEETKNR 258
>CGD|CAL0004569 [details] [associations]
symbol:orf19.2097 species:5476 "Candida albicans" [GO:0000790
"nuclear chromatin" evidence=IEA] [GO:0009378 "four-way junction
helicase activity" evidence=IEA] [GO:0000403 "Y-form DNA binding"
evidence=IEA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IEA] [GO:0000400 "four-way junction DNA binding"
evidence=IEA] [GO:0009650 "UV protection" evidence=IEA] [GO:0006289
"nucleotide-excision repair" evidence=IEA] [GO:0006302
"double-strand break repair" evidence=IEA] [GO:0010994 "free
ubiquitin chain polymerization" evidence=IEA] [GO:0006301
"postreplication repair" evidence=IEA] [GO:0000209 "protein
polyubiquitination" evidence=IEA] InterPro:IPR001841
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR014905
Pfam:PF00176 Pfam:PF00271 Pfam:PF08797 Pfam:PF13639 PROSITE:PS50089
PROSITE:PS51194 SMART:SM00184 SMART:SM00490 SMART:SM00910
CGD:CAL0004569 Prosite:PS00518 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
GO:GO:0006281 Gene3D:3.30.40.10 InterPro:IPR013083 GO:GO:0004386
InterPro:IPR017907 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 EMBL:AACQ01000031 EMBL:AACQ01000030
RefSeq:XP_719543.1 RefSeq:XP_719667.1 ProteinModelPortal:Q5ACX1
STRING:Q5ACX1 GeneID:3638757 GeneID:3638827 KEGG:cal:CaO19.2097
KEGG:cal:CaO19.9644 KO:K15505 Uniprot:Q5ACX1
Length = 1084
Score = 202 (76.2 bits), Expect = 7.0e-18, Sum P(4) = 7.0e-18
Identities = 40/111 (36%), Positives = 70/111 (63%)
Query: 900 GPLAKVG-----WFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYS 954
G L KVG +FR++LDE +I+N T+ A++ + L++ R+W L+GTPI N +DDLYS
Sbjct: 576 GELPKVGLYSVKFFRIILDEGHNIRNRNTKTAKSVYELQSSRKWILTGTPIVNRLDDLYS 635
Query: 955 YFRFLRYDPFAVYKSFCSMIKVPISKNPV-KGYKKLQAVLKTIMLRRTKGE 1004
+FL DP+ + + + + +P + + + ++++L+ I LRRTK +
Sbjct: 636 LTKFLELDPWNNFSYWKTFVTLPFEQKKISQTLDVVKSILEPIFLRRTKSQ 686
Score = 82 (33.9 bits), Expect = 7.0e-18, Sum P(4) = 7.0e-18
Identities = 18/26 (69%), Positives = 22/26 (84%)
Query: 684 SSLHCSGGILADDQGLGKTISTIALI 709
SSL GGILAD+ GLGKTI+T+AL+
Sbjct: 454 SSLR--GGILADEMGLGKTIATLALV 477
Score = 70 (29.7 bits), Expect = 7.0e-18, Sum P(4) = 7.0e-18
Identities = 27/81 (33%), Positives = 32/81 (39%)
Query: 767 NFVEQAKGRPAAG--TLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCELA 824
NF E RP A TL+V P S+L QW E + + L Y T L
Sbjct: 484 NFPEPKSDRPYASQTTLIVVPMSLLFQWKSEFEKCNNNSRHVCRLHYGEDQETNLAWSLC 543
Query: 825 KFD------VVITTYSIVSME 839
D V+ITTY V E
Sbjct: 544 NPDNSKIPIVMITTYGTVLNE 564
Score = 49 (22.3 bits), Expect = 7.0e-18, Sum P(4) = 7.0e-18
Identities = 21/77 (27%), Positives = 38/77 (49%)
Query: 607 VTSQHSSYSDYPGYPGVPLTGLGGMKS-KASDERLILQVAMQGISQPNAEASAPDGVLAV 665
++SQ + D +P VP L MK S+ +L + ++G+ + + P A+
Sbjct: 311 ISSQEINSGDVE-HP-VPEINLDQMKEFYQSNNQLKI---LEGLPETT---TPPKENFAL 362
Query: 666 PLLRHQRIALSWMVQKE 682
L +Q+ LSWM+ +E
Sbjct: 363 DLRSYQKHGLSWMLARE 379
>GENEDB_PFALCIPARUM|MAL13P1.216 [details] [associations]
symbol:MAL13P1.216 "DNA helicase, putative"
species:5833 "Plasmodium falciparum" [GO:0003678 "DNA helicase
activity" evidence=ISS] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50089
PROSITE:PS51194 SMART:SM00184 SMART:SM00490 Prosite:PS00518
GO:GO:0005524 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
Gene3D:3.30.40.10 InterPro:IPR013083 GO:GO:0004386
InterPro:IPR017907 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
HSSP:P38398 EMBL:AL844509 KO:K15505 RefSeq:XP_001350155.1
ProteinModelPortal:Q8IDQ5 EnsemblProtists:MAL13P1.216:mRNA
GeneID:813773 KEGG:pfa:MAL13P1.216 EuPathDB:PlasmoDB:PF3D7_1343400
HOGENOM:HOG000283331 ProtClustDB:CLSZ2433454 Uniprot:Q8IDQ5
Length = 1446
Score = 204 (76.9 bits), Expect = 1.2e-17, Sum P(3) = 1.2e-17
Identities = 43/117 (36%), Positives = 68/117 (58%)
Query: 887 KKGPDGLLLDIVAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQ 946
KK + +L ++ PL + W R+++DEA IKN + + A W LR +R WCL+GTPIQ
Sbjct: 861 KKKTNTMLYNMKEYPLYNITWRRIIIDEAHVIKNKNSIQSVAVWKLRGERNWCLTGTPIQ 920
Query: 947 NAIDDLYSYFRFLRYDPFAVYKSFCSMIKVPISKNPVK-GYKKLQAVLKTIMLRRTK 1002
N+I D++ FRFL P+ + + I ++KN + ++ + I+LRRTK
Sbjct: 921 NSIFDIFPLFRFLGIKPYGTIEWWNKEIVDYVNKNKLNLALDVVRKISSPILLRRTK 977
Score = 120 (47.3 bits), Expect = 1.2e-17, Sum P(3) = 1.2e-17
Identities = 33/114 (28%), Positives = 60/114 (52%)
Query: 733 DEEDNGIQVNGLDLVKQESDYCRVVP---NGSSAKSFNF-VEQA-KGR--PAAGTLVVCP 785
DE G + + L+ + + ++ N + K+F + +E KG GTLV+ P
Sbjct: 685 DEMGLGKTIQSIGLITHDIYHNKLYSKNNNLENKKNFTYLIENTIKGVHFKRGGTLVIAP 744
Query: 786 TSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCELAKFDVVITTYSIVSME 839
+++ QW EE+ T +G ++ +Y+G+S+ EL+ + VV+TTYS + E
Sbjct: 745 LALIYQWKEEIERH-TKEGFVTCYIYYGTSKDISSEELSGYSVVLTTYSTLVSE 797
Score = 75 (31.5 bits), Expect = 4.7e-13, Sum P(3) = 4.7e-13
Identities = 15/20 (75%), Positives = 17/20 (85%)
Query: 690 GGILADDQGLGKTISTIALI 709
GGILAD+ GLGKTI +I LI
Sbjct: 680 GGILADEMGLGKTIQSIGLI 699
Score = 37 (18.1 bits), Expect = 1.2e-17, Sum P(3) = 1.2e-17
Identities = 7/24 (29%), Positives = 14/24 (58%)
Query: 454 LSQNQVVHAKEEHEDLILESKRAR 477
LS+N++ EE +L+ ++ R
Sbjct: 416 LSENEIEEKNEEATNLVFVEEKFR 439
>DICTYBASE|DDB_G0282115 [details] [associations]
symbol:DDB_G0282115 "CHR group protein" species:44689
"Dictyostelium discoideum" [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0046872 "metal ion binding"
evidence=IEA] InterPro:IPR001841 InterPro:IPR018957
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS50089 PROSITE:PS51194 SMART:SM00184 SMART:SM00490
dictyBase:DDB_G0282115 Pfam:PF00097 GO:GO:0005524 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 EMBL:AAFI02000045 Gene3D:3.30.40.10
InterPro:IPR013083 GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 RefSeq:XP_640361.1
ProteinModelPortal:Q54SZ4 EnsemblProtists:DDB0233436 GeneID:8623416
KEGG:ddi:DDB_G0282115 InParanoid:Q54SZ4 OMA:DIVITTH
ProtClustDB:CLSZ2430494 Uniprot:Q54SZ4
Length = 1640
Score = 160 (61.4 bits), Expect = 1.4e-17, Sum P(6) = 1.4e-17
Identities = 43/117 (36%), Positives = 61/117 (52%)
Query: 889 GPDGLLLDIVAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNA 948
G DG I L + W+RV++DE+Q K +T + + L A +WCLSGTPI N
Sbjct: 1127 GNDG---SIPLPALLTIHWWRVIIDESQVCKI-KTLIFKGLQNLDAIHKWCLSGTPISNY 1182
Query: 949 IDDLYSYFRFLRYDPFAV-YKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGE 1004
+DD+Y FL P A K++ +I P K + L+ V+ I+LRR K E
Sbjct: 1183 LDDIYPSLHFLNCYPIAQDLKTWRKLIDRP------KNLELLKKVINPILLRREKSE 1233
Score = 110 (43.8 bits), Expect = 1.4e-17, Sum P(6) = 1.4e-17
Identities = 24/72 (33%), Positives = 40/72 (55%)
Query: 775 RPAAGTLVVCPTSVLRQWAEELRNKVTSK--GSLSVLVYHGSSRTK--DPCELAKFDVVI 830
+P A TL++CP S++ QW E++ + L + YHG++R K +L D+VI
Sbjct: 1042 KPKA-TLIICPPSLVSQWKSEIKKHLKPDYFNKLEIFEYHGANRKKKLSGVDLNLMDIVI 1100
Query: 831 TTYSIVSMEVPK 842
TT++ +E K
Sbjct: 1101 TTHNTFGIEFKK 1112
Score = 84 (34.6 bits), Expect = 1.4e-17, Sum P(6) = 1.4e-17
Identities = 17/42 (40%), Positives = 25/42 (59%)
Query: 689 SGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETL 730
+GG+L D+ GLGKT+ +IALI+ P F T K + +
Sbjct: 982 AGGLLCDEMGLGKTVMSIALIMSNHPV-FSTHRQQKEAYDEI 1022
Score = 55 (24.4 bits), Expect = 1.4e-17, Sum P(6) = 1.4e-17
Identities = 29/105 (27%), Positives = 43/105 (40%)
Query: 17 DEFAD-----DQGLSIDMDTLLGILEEEKQPDRVKSSPGDLSLRNLSQDELVQDVGSHSN 71
DEF D D + D+D L I + K D + L Q+ELV+D G
Sbjct: 323 DEFIDLENDSDNNNNDDLDDLNEIEDLNKISDNSDEDEYEEELEEEDQEELVED-GDEDE 381
Query: 72 LQLQSGFKGDMRDIATYPLYGLEISGAESGGLGDSSSQLEPTEQK 116
L+ + D D + G SG GG+ D + PT+++
Sbjct: 382 ALLEK--EADDED--DFKEIG---SGGGGGGVIDDIIKNTPTKKQ 419
Score = 46 (21.3 bits), Expect = 1.4e-17, Sum P(6) = 1.4e-17
Identities = 16/54 (29%), Positives = 25/54 (46%)
Query: 629 GGMKSKASDERLILQVAMQGISQPNAEASAPDGVLAVPLLRHQRIALSWMVQKE 682
GG K++ + L ++ A+ APD L L HQ+ L WM+ +E
Sbjct: 884 GGNKNEINPRDLFVKKAL-------LTTEAPDS-LKSQLKHHQKEGLWWMLGRE 929
Score = 42 (19.8 bits), Expect = 2.6e-16, Sum P(6) = 2.6e-16
Identities = 57/249 (22%), Positives = 93/249 (37%)
Query: 239 DVPYTDAEVSSHNVASTDSTICHG-SEIISDD-----DYYSAMPCYINTGDTIFGDPSSF 292
D P T ++S N +T +T S +IS D DY + S
Sbjct: 111 DTPSTSTSITSTNSTTTSTTTTPPISNVISVDSTDNEDYQPKKEIKKKNNKKVKNKKSKE 170
Query: 293 NFQHLLSSEETATKPKDEEGEFTTE----IACSSSGLVLNAQGGPGKG-SMLKVPAIDYL 347
+++ ++ ++EE + T E I SSS L+ P K S+L + I
Sbjct: 171 EECIIINEKKEINIDQEEEDQPTQEVDYSITNSSSSLI-----SPTKSNSILNIKVIASK 225
Query: 348 DAKRQCEDSKNGLPIYGNSLSNIT--LGD---GKRSAQPCTYSHSHSSRTKQMVFAKDEG 402
+ + K L I N L T L D GK+ + ++ T + F G
Sbjct: 226 TEETTVKPIKPRLVIR-NELEIRTKHLNDYEWGKKMNEVMGLDNTQIPSTLKASFRNRSG 284
Query: 403 NDDLFPCWSTVSDSVEPIDEAVGRNSSYHDGCNSFP-FKDSGQSFIGL-SPSLLSQNQVV 460
L + D +E ++ + R+ S+ N+ P + FI L + S + N +
Sbjct: 285 GSFL-KALAMAKDYLERNNKQIKRDISF---LNTDPEIGNEDDEFIDLENDSDNNNNDDL 340
Query: 461 HAKEEHEDL 469
E EDL
Sbjct: 341 DDLNEIEDL 349
Score = 41 (19.5 bits), Expect = 1.4e-17, Sum P(6) = 1.4e-17
Identities = 11/38 (28%), Positives = 19/38 (50%)
Query: 562 DEPDICILEDISQPARSNQSLVLGKTLSMNRSACSNHS 599
D+ D L D P+RSN + T + N + +N++
Sbjct: 621 DDLDSKRLIDFRTPSRSNSTTTTTTTTTNNNNNNNNNN 658
>UNIPROTKB|E1C5L6 [details] [associations]
symbol:SHPRH "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000786 "nucleosome" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006334 "nucleosome assembly"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR001965 InterPro:IPR005818 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00271 Pfam:PF00538 Pfam:PF00628 Pfam:PF13639
PROSITE:PS50089 PROSITE:PS51194 PROSITE:PS51504 SMART:SM00184
SMART:SM00249 SMART:SM00490 SMART:SM00526 Prosite:PS00518
GO:GO:0005524 GO:GO:0005634 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 Gene3D:1.10.10.10 InterPro:IPR011991
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 GO:GO:0004386 InterPro:IPR019786 PROSITE:PS01359
InterPro:IPR017907 InterPro:IPR014001 SMART:SM00487 GO:GO:0006334
GO:GO:0000786 GeneTree:ENSGT00700000104571 OMA:FEGLVKQ
EMBL:AADN02025316 IPI:IPI00575038 Ensembl:ENSGALT00000020082
Uniprot:E1C5L6
Length = 1682
Score = 160 (61.4 bits), Expect = 2.3e-17, Sum P(3) = 2.3e-17
Identities = 35/105 (33%), Positives = 54/105 (51%)
Query: 898 VAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFR 957
+ PL V W+R+ LDEAQ ++ + A L RWC+SGTP+Q ++DLY
Sbjct: 804 IPSPLVAVEWWRICLDEAQMVECTTAKAAEMALRLSGINRWCVSGTPVQRGLEDLYGLVL 863
Query: 958 FLRYDPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTK 1002
FL DP+ V + ++ P + K + L +++ IM R K
Sbjct: 864 FLGIDPYWVKHWWDQLLYRPYCR---KNSQPLYSLIAKIMWRSAK 905
Score = 118 (46.6 bits), Expect = 2.3e-17, Sum P(3) = 2.3e-17
Identities = 27/63 (42%), Positives = 38/63 (60%)
Query: 780 TLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTK--DPCELAKFDVVITTYSIVS 837
TL++ P+S+ QW +E+ V S SL VLVY G + P LA+ DVVITTY ++
Sbjct: 718 TLIISPSSICHQWVDEINRHVRSS-SLRVLVYQGVKKHGFLQPHMLAEQDVVITTYDVLR 776
Query: 838 MEV 840
E+
Sbjct: 777 TEL 779
Score = 84 (34.6 bits), Expect = 2.3e-17, Sum P(3) = 2.3e-17
Identities = 18/42 (42%), Positives = 25/42 (59%)
Query: 690 GGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLN 731
GGILAD+ GLGKT+ +ALIL + +D + E +N
Sbjct: 371 GGILADEMGLGKTVEVLALILTHTREDIKQDDLTLPEGELVN 412
Score = 57 (25.1 bits), Expect = 1.3e-14, Sum P(3) = 1.3e-14
Identities = 26/105 (24%), Positives = 48/105 (45%)
Query: 517 NKKELDGVKEDMEAEIKTRSMASHLLKLSPESIQSNSSDCK---SHVDDEPDICI-LEDI 572
N KE + E KT S +LS + Q+N S S +E D C +++
Sbjct: 515 NYKEQKRRERTKEQAAKT-SERIQKKQLSDANTQTNESKIPLRTSIATEEHDYCATIKND 573
Query: 573 SQPARSNQSLVLGKTLSMNRSACSNHSVALGKPVVTSQHSSYSDY 617
+ N++ + + ++ ++A S GKP+++ SS+SD+
Sbjct: 574 RKSETDNENSM--EENNIQKAAVSKSPDLHGKPLISGDISSHSDF 616
Score = 54 (24.1 bits), Expect = 2.7e-14, Sum P(3) = 2.7e-14
Identities = 12/49 (24%), Positives = 23/49 (46%)
Query: 719 TEDDNKRQLETLNLDEEDNGIQVNGLDLVKQESDYCRVVPNGSSAKSFN 767
+E K+QL N ++ I + + +E DYC + N +++ N
Sbjct: 533 SERIQKKQLSDANTQTNESKIPLR-TSIATEEHDYCATIKNDRKSETDN 580
Score = 37 (18.1 bits), Expect = 1.5e-05, Sum P(2) = 1.5e-05
Identities = 5/10 (50%), Positives = 10/10 (100%)
Query: 237 YVDVPYTDAE 246
YVD+P++++E
Sbjct: 781 YVDIPHSNSE 790
>UNIPROTKB|E1C615 [details] [associations]
symbol:SHPRH "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000786 "nucleosome" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006334 "nucleosome assembly"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR001965 InterPro:IPR005818 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00271 Pfam:PF00538 Pfam:PF00628 Pfam:PF13639
PROSITE:PS50089 PROSITE:PS51194 PROSITE:PS51504 SMART:SM00184
SMART:SM00249 SMART:SM00490 SMART:SM00526 Prosite:PS00518
GO:GO:0005524 GO:GO:0005634 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 Gene3D:1.10.10.10 InterPro:IPR011991
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 GO:GO:0004386 InterPro:IPR019786 PROSITE:PS01359
InterPro:IPR017907 InterPro:IPR014001 SMART:SM00487 GO:GO:0006334
GO:GO:0000786 GeneTree:ENSGT00700000104571 EMBL:AADN02025316
IPI:IPI00821492 Ensembl:ENSGALT00000037603 Uniprot:E1C615
Length = 1682
Score = 160 (61.4 bits), Expect = 2.3e-17, Sum P(3) = 2.3e-17
Identities = 35/105 (33%), Positives = 54/105 (51%)
Query: 898 VAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFR 957
+ PL V W+R+ LDEAQ ++ + A L RWC+SGTP+Q ++DLY
Sbjct: 804 IPSPLVAVEWWRICLDEAQMVECTTAKAAEMALRLSGINRWCVSGTPVQRGLEDLYGLVL 863
Query: 958 FLRYDPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTK 1002
FL DP+ V + ++ P + K + L +++ IM R K
Sbjct: 864 FLGIDPYWVKHWWDQLLYRPYCR---KNSQPLYSLIAKIMWRSAK 905
Score = 118 (46.6 bits), Expect = 2.3e-17, Sum P(3) = 2.3e-17
Identities = 27/63 (42%), Positives = 38/63 (60%)
Query: 780 TLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTK--DPCELAKFDVVITTYSIVS 837
TL++ P+S+ QW +E+ V S SL VLVY G + P LA+ DVVITTY ++
Sbjct: 718 TLIISPSSICHQWVDEINRHVRSS-SLRVLVYQGVKKHGFLQPHMLAEQDVVITTYDVLR 776
Query: 838 MEV 840
E+
Sbjct: 777 TEL 779
Score = 84 (34.6 bits), Expect = 2.3e-17, Sum P(3) = 2.3e-17
Identities = 18/42 (42%), Positives = 25/42 (59%)
Query: 690 GGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLN 731
GGILAD+ GLGKT+ +ALIL + +D + E +N
Sbjct: 366 GGILADEMGLGKTVEVLALILTHTREDIKQDDLTLPEGELVN 407
Score = 43 (20.2 bits), Expect = 3.5e-13, Sum P(3) = 3.5e-13
Identities = 15/59 (25%), Positives = 24/59 (40%)
Query: 719 TEDDNKRQLETLNLD-EEDNGIQVNGLDLVK---------QESDYCRVVPNGSSAKSFN 767
+E K+QL N E V D++K +E DYC + N +++ N
Sbjct: 528 SERIQKKQLSDANTQTNESKDSDVTSTDVLKIPLRTSIATEEHDYCATIKNDRKSETDN 586
Score = 37 (18.1 bits), Expect = 1.5e-05, Sum P(2) = 1.5e-05
Identities = 5/10 (50%), Positives = 10/10 (100%)
Query: 237 YVDVPYTDAE 246
YVD+P++++E
Sbjct: 781 YVDIPHSNSE 790
>UNIPROTKB|I3L592 [details] [associations]
symbol:LOC100623372 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] InterPro:IPR000330 Pfam:PF00176
GO:GO:0005524 GO:GO:0003677 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GeneTree:ENSGT00700000104545
Ensembl:ENSSSCT00000023786 Uniprot:I3L592
Length = 562
Score = 148 (57.2 bits), Expect = 3.7e-17, Sum P(3) = 3.7e-17
Identities = 39/90 (43%), Positives = 53/90 (58%)
Query: 633 SKASDERLILQVAMQGISQPNAEASAPDGVLAVPLLRHQRIALSWMVQKETSSLHCSGGI 692
S+A DE L +++ A A P G L VPLL HQ+ AL+W++ +E+ GGI
Sbjct: 368 SEAIDE---LHRSLESRPDETAVAEDPAG-LKVPLLLHQKQALAWLLWRESQKP--PGGI 421
Query: 693 LADDQGLGKTISTIALILKERPPSFRTEDD 722
LADD GLGKT++ IALIL ++ E D
Sbjct: 422 LADDMGLGKTLTMIALILTQKNQEKNKEKD 451
Score = 143 (55.4 bits), Expect = 3.7e-17, Sum P(3) = 3.7e-17
Identities = 24/62 (38%), Positives = 43/62 (69%)
Query: 780 TLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCELAKFDVVITTYSIVSME 839
TL++CP S++ W E++ +V + L V +YHG +R ++ L+ +D+VITTYS+++ E
Sbjct: 472 TLIICPASLIHHWKNEVQKRVCNN-ELRVYLYHGPNRDQNAKVLSMYDIVITTYSLLAKE 530
Query: 840 VP 841
+P
Sbjct: 531 IP 532
Score = 52 (23.4 bits), Expect = 3.7e-17, Sum P(3) = 3.7e-17
Identities = 13/46 (28%), Positives = 24/46 (52%)
Query: 519 KELDGVKEDMEAEIKTRSMASHLLKLSPESIQSNSSDCKSHVDDEP 564
KEL+G+ + E+K+R + L+ P S ++ + D + EP
Sbjct: 34 KELEGMHQRKVFEMKSRQVHKDELREPPVSQETANGDSYIRKESEP 79
Score = 42 (19.8 bits), Expect = 1.9e-05, Sum P(2) = 1.9e-05
Identities = 18/69 (26%), Positives = 29/69 (42%)
Query: 7 AWLCGEVSAADE---FADDQGLSIDMDTLLGILEEEKQPDRVKSSPGDLSLRNLSQDELV 63
AWL S ADD GL + T++ ++ +K ++ K S LS+ +
Sbjct: 407 AWLLWRESQKPPGGILADDMGLGKTL-TMIALILTQKNQEKNKEKDKTTSSTWLSKTDS- 464
Query: 64 QDVGSHSNL 72
+ SH L
Sbjct: 465 SEFTSHRTL 473
>SGD|S000004022 [details] [associations]
symbol:RAD5 "DNA helicase" species:4932 "Saccharomyces
cerevisiae" [GO:0010994 "free ubiquitin chain polymerization"
evidence=IDA] [GO:0000790 "nuclear chromatin" evidence=IDA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA;IDA] [GO:0005737 "cytoplasm"
evidence=IEA;IDA] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0006974 "response to DNA damage stimulus" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0042276
"error-prone translesion synthesis" evidence=IMP] [GO:0009378
"four-way junction helicase activity" evidence=IDA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0016818 "hydrolase activity, acting on acid
anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0006302
"double-strand break repair" evidence=IGI;IMP] [GO:0008094
"DNA-dependent ATPase activity" evidence=IDA] [GO:0000403 "Y-form
DNA binding" evidence=IDA] [GO:0000400 "four-way junction DNA
binding" evidence=IDA] [GO:0006301 "postreplication repair"
evidence=IDA] [GO:0000209 "protein polyubiquitination"
evidence=IDA] InterPro:IPR001841 InterPro:IPR018957
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR014905
Pfam:PF00176 Pfam:PF00271 Pfam:PF08797 PROSITE:PS50089
PROSITE:PS51194 SMART:SM00184 SMART:SM00490 SMART:SM00910
SGD:S000004022 Pfam:PF00097 Prosite:PS00518 GO:GO:0005524
GO:GO:0005737 GO:GO:0046872 GO:GO:0008270 EMBL:BK006945
GO:GO:0000790 Gene3D:3.30.40.10 InterPro:IPR013083 GO:GO:0006302
GO:GO:0000209 InterPro:IPR017907 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0000403 GO:GO:0009378
GO:GO:0008094 GO:GO:0042276 GeneTree:ENSGT00700000104586
GO:GO:0000400 GO:GO:0010994 KO:K15505 HOGENOM:HOG000040492
OMA:MDPWWSP OrthoDB:EOG4J40R2 EMBL:M96644 EMBL:Z73204 EMBL:S46103
PIR:S64859 RefSeq:NP_013132.1 ProteinModelPortal:P32849 SMR:P32849
DIP:DIP-5830N IntAct:P32849 MINT:MINT-2784640 STRING:P32849
PaxDb:P32849 PeptideAtlas:P32849 EnsemblFungi:YLR032W GeneID:850719
KEGG:sce:YLR032W CYGD:YLR032w NextBio:966793 Genevestigator:P32849
GermOnline:YLR032W Uniprot:P32849
Length = 1169
Score = 202 (76.2 bits), Expect = 4.1e-17, Sum P(4) = 4.1e-17
Identities = 38/106 (35%), Positives = 65/106 (61%)
Query: 898 VAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFR 957
++ L V ++R+++DE +I+N T ++A L+ K +W L+GTPI N +DDLYS +
Sbjct: 666 ISSGLFSVNFYRIIIDEGHNIRNRTTVTSKAVMALQGKCKWVLTGTPIINRLDDLYSLVK 725
Query: 958 FLRYDPFAVYKSFCSMIKVPI-SKNPVKGYKKLQAVLKTIMLRRTK 1002
FL DP+ + + + P SKN + + + A+L+ ++LRRTK
Sbjct: 726 FLELDPWRQINYWKTFVSTPFESKNYKQAFDVVNAILEPVLLRRTK 771
Score = 83 (34.3 bits), Expect = 4.1e-17, Sum P(4) = 4.1e-17
Identities = 28/82 (34%), Positives = 38/82 (46%)
Query: 771 QAKGRPAAG--TLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCELAKFD- 827
Q +P A TL+V P S+L QW+ E K + + VY+G + + L K
Sbjct: 577 QDNKKPYASKTTLIVVPMSLLTQWSNEF-TKANNSPDMYHEVYYGGNVSSLKTLLTKTKT 635
Query: 828 ---VVITTYSIVSMEVPKQPLG 846
VV+TTY IV E K G
Sbjct: 636 PPTVVLTTYGIVQNEWTKHSKG 657
Score = 72 (30.4 bits), Expect = 4.1e-17, Sum P(4) = 4.1e-17
Identities = 20/66 (30%), Positives = 32/66 (48%)
Query: 645 AMQGISQPNAEASAPDGVLAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTIS 704
A Q + Q + DG+ L +L+ + K GGIL+D+ GLGKT++
Sbjct: 488 AAQNLQQDHVNVE--DGIFFYANLHSGEFSLAKPILKTM----IKGGILSDEMGLGKTVA 541
Query: 705 TIALIL 710
+L+L
Sbjct: 542 AYSLVL 547
Score = 45 (20.9 bits), Expect = 2.1e-14, Sum P(4) = 2.1e-14
Identities = 11/33 (33%), Positives = 18/33 (54%)
Query: 650 SQPNAEASAPDGVLAVPLLRHQRIALSWMVQKE 682
S P E S V + L +Q+ L+WM+++E
Sbjct: 422 SLPETEPSRD--VFKLELRNYQKQGLTWMLRRE 452
Score = 40 (19.1 bits), Expect = 4.1e-17, Sum P(4) = 4.1e-17
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 110 LEPTEQKCSPLQTCSASFSDWFNQNSGT 137
+E E+ S + S + S +F+ NSGT
Sbjct: 95 MELNEKFGSQEEGLSLALSHYFDHNSGT 122
Score = 37 (18.1 bits), Expect = 8.3e-17, Sum P(4) = 8.3e-17
Identities = 8/16 (50%), Positives = 11/16 (68%)
Query: 366 SLSNITLGDGKRSAQP 381
S+S+ T G+G RS P
Sbjct: 50 SVSDTTEGEGDRSIVP 65
Score = 37 (18.1 bits), Expect = 8.3e-17, Sum P(4) = 8.3e-17
Identities = 7/26 (26%), Positives = 14/26 (53%)
Query: 558 SHVDDEPDICILEDISQPARSNQSLV 583
SH DD+ D+ + + ++S+V
Sbjct: 39 SHNDDDDDVVVSVSDTTEGEGDRSIV 64
>UNIPROTKB|E2R8G0 [details] [associations]
symbol:SHPRH "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006334 "nucleosome assembly" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0000786 "nucleosome" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR001965 InterPro:IPR005818 Pfam:PF00176 Pfam:PF00538
Pfam:PF13639 PROSITE:PS50089 PROSITE:PS51194 PROSITE:PS51504
SMART:SM00184 SMART:SM00249 SMART:SM00490 SMART:SM00526
Prosite:PS00518 GO:GO:0005524 GO:GO:0005634 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 Gene3D:1.10.10.10 InterPro:IPR011991
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 GO:GO:0004386 InterPro:IPR019786 PROSITE:PS01359
InterPro:IPR017907 InterPro:IPR014001 SMART:SM00487 GO:GO:0006334
GO:GO:0000786 GeneTree:ENSGT00700000104571 KO:K15710 CTD:257218
OMA:FEGLVKQ EMBL:AAEX03000243 EMBL:AAEX03000244 RefSeq:XP_533438.2
Ensembl:ENSCAFT00000000517 GeneID:476233 KEGG:cfa:476233
Uniprot:E2R8G0
Length = 1685
Score = 157 (60.3 bits), Expect = 8.9e-17, Sum P(5) = 8.9e-17
Identities = 32/97 (32%), Positives = 50/97 (51%)
Query: 898 VAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFR 957
+ PL V W+R+ LDEAQ ++ + A L RWC+SGTP+Q ++DL+
Sbjct: 806 IPSPLVAVEWWRICLDEAQMVECPAVKAAEMAQRLSGINRWCISGTPVQRGLEDLFGLVV 865
Query: 958 FLRYDPFAVYKSFCSMIKVPI-SKNPVKGYKKLQAVL 993
FL +P+ V + ++ P KNP Y + +L
Sbjct: 866 FLGIEPYCVKHWWVRLLYRPYCKKNPQHLYSFIAKIL 902
Score = 111 (44.1 bits), Expect = 8.9e-17, Sum P(5) = 8.9e-17
Identities = 25/63 (39%), Positives = 37/63 (58%)
Query: 780 TLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTK--DPCELAKFDVVITTYSIVS 837
TL++ P+S+ QW +E+ V S SL VLVY G + P LA+ D+VI TY ++
Sbjct: 720 TLIISPSSICHQWVDEINRHVRSS-SLRVLVYQGVKKDGFLQPHFLAEQDIVIITYDVLR 778
Query: 838 MEV 840
E+
Sbjct: 779 SEL 781
Score = 79 (32.9 bits), Expect = 8.9e-17, Sum P(5) = 8.9e-17
Identities = 15/21 (71%), Positives = 18/21 (85%)
Query: 690 GGILADDQGLGKTISTIALIL 710
GGILAD+ GLGKT+ +ALIL
Sbjct: 370 GGILADEMGLGKTVEVLALIL 390
Score = 54 (24.1 bits), Expect = 8.9e-17, Sum P(5) = 8.9e-17
Identities = 10/19 (52%), Positives = 17/19 (89%)
Query: 665 VPLLR-HQRIALSWMVQKE 682
+P+LR +QR A++WM+Q+E
Sbjct: 303 IPVLRPYQREAVNWMLQQE 321
Score = 46 (21.3 bits), Expect = 8.9e-17, Sum P(5) = 8.9e-17
Identities = 18/65 (27%), Positives = 30/65 (46%)
Query: 89 PLYGLEISGAESGGLGDSSSQ--LEPTEQKCSPLQTCSASFSDWFNQNSGTCCPESVGIS 146
P G + S A LGDS + +++CS + S S S+ + GT P S+ ++
Sbjct: 42 PCSGSDFSSAHCIILGDSLKEEVAHKDKKRCS--EAVSISKSNDKEETCGTFSPLSIKLN 99
Query: 147 QFETP 151
+P
Sbjct: 100 IVISP 104
Score = 37 (18.1 bits), Expect = 1.5e-11, Sum P(3) = 1.5e-11
Identities = 7/25 (28%), Positives = 16/25 (64%)
Query: 711 KERPPSFRTEDDNKRQLETLNLDEE 735
++R P R +++ ++QL N+ E+
Sbjct: 5 RKRAPPVRVDEEKQQQLHW-NMHED 28
Score = 37 (18.1 bits), Expect = 4.9e-05, Sum P(3) = 4.9e-05
Identities = 5/10 (50%), Positives = 10/10 (100%)
Query: 237 YVDVPYTDAE 246
YVD+P++++E
Sbjct: 783 YVDIPHSNSE 792
>UNIPROTKB|Q149N8 [details] [associations]
symbol:SHPRH "E3 ubiquitin-protein ligase SHPRH"
species:9606 "Homo sapiens" [GO:0000786 "nucleosome" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006334 "nucleosome assembly" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0016874 "ligase
activity" evidence=IEA] [GO:0016567 "protein ubiquitination"
evidence=IEA] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR005818
Pfam:PF00176 Pfam:PF00271 Pfam:PF00538 Pfam:PF13639 PROSITE:PS50016
PROSITE:PS50089 PROSITE:PS51194 PROSITE:PS51504 SMART:SM00184
SMART:SM00249 SMART:SM00490 SMART:SM00526 UniPathway:UPA00143
Prosite:PS00518 GO:GO:0005524 GO:GO:0005634 GO:GO:0046872
GO:GO:0003677 GO:GO:0016874 GO:GO:0008270 GO:GO:0006281
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0016567
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 GO:GO:0004386 InterPro:IPR019786 PROSITE:PS01359
InterPro:IPR017907 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006334 GO:GO:0000786 EMBL:AL356599 KO:K15710
EMBL:AY161136 EMBL:AY163808 EMBL:CR749290 EMBL:AL451145
EMBL:BC113089 EMBL:BC117685 EMBL:BC117686 EMBL:AK075318
EMBL:AK094944 EMBL:AB095943 IPI:IPI00470931 IPI:IPI00746978
IPI:IPI00845433 IPI:IPI00845497 RefSeq:NP_001036148.2
RefSeq:NP_775105.1 UniGene:Hs.723297 ProteinModelPortal:Q149N8
SMR:Q149N8 DIP:DIP-46277N IntAct:Q149N8 MINT:MINT-1370426
STRING:Q149N8 PhosphoSite:Q149N8 DMDM:146325723 PaxDb:Q149N8
PRIDE:Q149N8 Ensembl:ENST00000275233 Ensembl:ENST00000367505
Ensembl:ENST00000438092 Ensembl:ENST00000519632 GeneID:257218
KEGG:hsa:257218 UCSC:uc003qle.3 UCSC:uc003qlf.3 UCSC:uc003qlj.1
CTD:257218 GeneCards:GC06M146185 HGNC:HGNC:19336 HPA:HPA034854
MIM:608048 neXtProt:NX_Q149N8 PharmGKB:PA134880315
HOVERGEN:HBG059171 OrthoDB:EOG4G4GPJ GenomeRNAi:257218
NextBio:92973 ArrayExpress:Q149N8 Bgee:Q149N8 Genevestigator:Q149N8
Uniprot:Q149N8
Length = 1683
Score = 157 (60.3 bits), Expect = 1.5e-16, Sum P(4) = 1.5e-16
Identities = 32/97 (32%), Positives = 50/97 (51%)
Query: 898 VAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFR 957
+ PL V W+R+ LDEAQ ++ + A L RWC+SGTP+Q ++DL+
Sbjct: 804 IPSPLVAVEWWRICLDEAQMVECPTVKAAEMAQRLSGINRWCISGTPVQRGLEDLFGLVV 863
Query: 958 FLRYDPFAVYKSFCSMIKVPI-SKNPVKGYKKLQAVL 993
FL +P+ V + ++ P KNP Y + +L
Sbjct: 864 FLGIEPYCVKHWWVRLLYRPYCKKNPQHLYSFIAKIL 900
Score = 111 (44.1 bits), Expect = 1.5e-16, Sum P(4) = 1.5e-16
Identities = 25/63 (39%), Positives = 37/63 (58%)
Query: 780 TLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTK--DPCELAKFDVVITTYSIVS 837
TL++ P+S+ QW +E+ V S SL VLVY G + P LA+ D+VI TY ++
Sbjct: 718 TLIISPSSICHQWVDEINRHVRSS-SLRVLVYQGVKKDGFLQPHFLAEQDIVIITYDVLR 776
Query: 838 MEV 840
E+
Sbjct: 777 SEL 779
Score = 79 (32.9 bits), Expect = 1.5e-16, Sum P(4) = 1.5e-16
Identities = 15/21 (71%), Positives = 18/21 (85%)
Query: 690 GGILADDQGLGKTISTIALIL 710
GGILAD+ GLGKT+ +ALIL
Sbjct: 368 GGILADEMGLGKTVEVLALIL 388
Score = 54 (24.1 bits), Expect = 1.5e-16, Sum P(4) = 1.5e-16
Identities = 10/19 (52%), Positives = 17/19 (89%)
Query: 665 VPLLR-HQRIALSWMVQKE 682
+P+LR +QR A++WM+Q+E
Sbjct: 301 IPVLRPYQREAVNWMLQQE 319
Score = 51 (23.0 bits), Expect = 5.8e-13, Sum P(3) = 5.8e-13
Identities = 14/38 (36%), Positives = 19/38 (50%)
Query: 131 FNQNSGT-CCPESVGISQFETPGCSTASSFSEGDGYHF 167
FNQ T C ES+ + + P +T S F+ D Y F
Sbjct: 623 FNQEHETEDCAESLNHADSDVPPSNTMSPFNTSD-YRF 659
Score = 42 (19.8 bits), Expect = 4.7e-12, Sum P(3) = 4.7e-12
Identities = 10/34 (29%), Positives = 18/34 (52%)
Query: 680 QKETSSLHCSGGILADDQGLGKTISTIALILKER 713
+KE S+ C GIL + G+ + + + K+R
Sbjct: 164 KKEPMSI-CDKGILVESSFSGEMLEDLGWLQKKR 196
Score = 38 (18.4 bits), Expect = 1.2e-11, Sum P(3) = 1.2e-11
Identities = 7/25 (28%), Positives = 16/25 (64%)
Query: 711 KERPPSFRTEDDNKRQLETLNLDEE 735
++R P R +++ ++QL N+ E+
Sbjct: 5 RKRAPPVRVDEEKRQQLHW-NMHED 28
Score = 38 (18.4 bits), Expect = 1.2e-11, Sum P(3) = 1.2e-11
Identities = 17/60 (28%), Positives = 27/60 (45%)
Query: 203 PSSITENFDERYGHYGASIGNR--LGSS-VPEGNLCTYVDVPYTDAEVSSHNVASTDSTI 259
PS +++ D+ Y +Y S NR L VP P+ + + H A++DS I
Sbjct: 552 PSDTSDDDDDPYYYYYKSRRNRSKLRKKLVPSTKKGK--SQPFINPDSQGHCPATSDSGI 609
Score = 37 (18.1 bits), Expect = 1.6e-05, Sum P(3) = 1.6e-05
Identities = 5/10 (50%), Positives = 10/10 (100%)
Query: 237 YVDVPYTDAE 246
YVD+P++++E
Sbjct: 781 YVDIPHSNSE 790
>UNIPROTKB|K4DI94 [details] [associations]
symbol:SHPRH "SNF2 histone linker PHD RING helicase,
isoform CRA_a" species:9606 "Homo sapiens" [GO:0000786 "nucleosome"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006334 "nucleosome assembly" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR005818
Pfam:PF00176 Pfam:PF00271 Pfam:PF00538 Pfam:PF13639 PROSITE:PS50089
PROSITE:PS51194 PROSITE:PS51504 SMART:SM00184 SMART:SM00249
SMART:SM00490 SMART:SM00526 Prosite:PS00518 GO:GO:0005524
GO:GO:0005634 GO:GO:0046872 GO:GO:0003677 EMBL:CH471051
GO:GO:0008270 Gene3D:1.10.10.10 InterPro:IPR011991
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 GO:GO:0004386 InterPro:IPR019786 PROSITE:PS01359
InterPro:IPR017907 InterPro:IPR014001 SMART:SM00487 GO:GO:0006334
GO:GO:0000786 EMBL:AL356599 EMBL:AL451145 HGNC:HGNC:19336
OMA:FEGLVKQ Ensembl:ENST00000367503 Uniprot:K4DI94
Length = 1687
Score = 157 (60.3 bits), Expect = 1.5e-16, Sum P(4) = 1.5e-16
Identities = 32/97 (32%), Positives = 50/97 (51%)
Query: 898 VAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFR 957
+ PL V W+R+ LDEAQ ++ + A L RWC+SGTP+Q ++DL+
Sbjct: 804 IPSPLVAVEWWRICLDEAQMVECPTVKAAEMAQRLSGINRWCISGTPVQRGLEDLFGLVV 863
Query: 958 FLRYDPFAVYKSFCSMIKVPI-SKNPVKGYKKLQAVL 993
FL +P+ V + ++ P KNP Y + +L
Sbjct: 864 FLGIEPYCVKHWWVRLLYRPYCKKNPQHLYSFIAKIL 900
Score = 111 (44.1 bits), Expect = 1.5e-16, Sum P(4) = 1.5e-16
Identities = 25/63 (39%), Positives = 37/63 (58%)
Query: 780 TLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTK--DPCELAKFDVVITTYSIVS 837
TL++ P+S+ QW +E+ V S SL VLVY G + P LA+ D+VI TY ++
Sbjct: 718 TLIISPSSICHQWVDEINRHVRSS-SLRVLVYQGVKKDGFLQPHFLAEQDIVIITYDVLR 776
Query: 838 MEV 840
E+
Sbjct: 777 SEL 779
Score = 79 (32.9 bits), Expect = 1.5e-16, Sum P(4) = 1.5e-16
Identities = 15/21 (71%), Positives = 18/21 (85%)
Query: 690 GGILADDQGLGKTISTIALIL 710
GGILAD+ GLGKT+ +ALIL
Sbjct: 368 GGILADEMGLGKTVEVLALIL 388
Score = 54 (24.1 bits), Expect = 1.5e-16, Sum P(4) = 1.5e-16
Identities = 10/19 (52%), Positives = 17/19 (89%)
Query: 665 VPLLR-HQRIALSWMVQKE 682
+P+LR +QR A++WM+Q+E
Sbjct: 301 IPVLRPYQREAVNWMLQQE 319
Score = 51 (23.0 bits), Expect = 5.8e-13, Sum P(3) = 5.8e-13
Identities = 14/38 (36%), Positives = 19/38 (50%)
Query: 131 FNQNSGT-CCPESVGISQFETPGCSTASSFSEGDGYHF 167
FNQ T C ES+ + + P +T S F+ D Y F
Sbjct: 623 FNQEHETEDCAESLNHADSDVPPSNTMSPFNTSD-YRF 659
Score = 42 (19.8 bits), Expect = 4.8e-12, Sum P(3) = 4.8e-12
Identities = 10/34 (29%), Positives = 18/34 (52%)
Query: 680 QKETSSLHCSGGILADDQGLGKTISTIALILKER 713
+KE S+ C GIL + G+ + + + K+R
Sbjct: 164 KKEPMSI-CDKGILVESSFSGEMLEDLGWLQKKR 196
Score = 38 (18.4 bits), Expect = 1.2e-11, Sum P(3) = 1.2e-11
Identities = 7/25 (28%), Positives = 16/25 (64%)
Query: 711 KERPPSFRTEDDNKRQLETLNLDEE 735
++R P R +++ ++QL N+ E+
Sbjct: 5 RKRAPPVRVDEEKRQQLHW-NMHED 28
Score = 38 (18.4 bits), Expect = 1.2e-11, Sum P(3) = 1.2e-11
Identities = 17/60 (28%), Positives = 27/60 (45%)
Query: 203 PSSITENFDERYGHYGASIGNR--LGSS-VPEGNLCTYVDVPYTDAEVSSHNVASTDSTI 259
PS +++ D+ Y +Y S NR L VP P+ + + H A++DS I
Sbjct: 552 PSDTSDDDDDPYYYYYKSRRNRSKLRKKLVPSTKKGK--SQPFINPDSQGHCPATSDSGI 609
Score = 37 (18.1 bits), Expect = 1.6e-05, Sum P(3) = 1.6e-05
Identities = 5/10 (50%), Positives = 10/10 (100%)
Query: 237 YVDVPYTDAE 246
YVD+P++++E
Sbjct: 781 YVDIPHSNSE 790
>MGI|MGI:1917581 [details] [associations]
symbol:Shprh "SNF2 histone linker PHD RING helicase"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000786 "nucleosome" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0006334
"nucleosome assembly" evidence=IEA] [GO:0006974 "response to DNA
damage stimulus" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0016874 "ligase
activity" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR005818
Pfam:PF00176 Pfam:PF00271 Pfam:PF00538 PROSITE:PS50016
PROSITE:PS50089 PROSITE:PS51194 PROSITE:PS51504 SMART:SM00184
SMART:SM00249 SMART:SM00526 UniPathway:UPA00143 MGI:MGI:1917581
Prosite:PS00518 GO:GO:0005524 GO:GO:0005634 GO:GO:0046872
GO:GO:0003677 GO:GO:0016874 GO:GO:0008270 GO:GO:0006281
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0016567
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 GO:GO:0004386 InterPro:IPR019786 PROSITE:PS01359
HSSP:Q97XQ5 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006334 GO:GO:0000786
GeneTree:ENSGT00700000104571 KO:K15710 CTD:257218
HOVERGEN:HBG059171 OrthoDB:EOG4G4GPJ EMBL:AY162264 EMBL:AY162265
EMBL:AY162266 EMBL:AK053448 EMBL:AK082160 EMBL:BC006883
EMBL:BC055003 IPI:IPI00380430 IPI:IPI00469003 IPI:IPI00623316
IPI:IPI00845816 RefSeq:NP_001071175.1 RefSeq:NP_766525.3
UniGene:Mm.133101 ProteinModelPortal:Q7TPQ3 SMR:Q7TPQ3
STRING:Q7TPQ3 PhosphoSite:Q7TPQ3 PaxDb:Q7TPQ3 PRIDE:Q7TPQ3
Ensembl:ENSMUST00000044053 Ensembl:ENSMUST00000054814
Ensembl:ENSMUST00000159541 Ensembl:ENSMUST00000159810 GeneID:268281
KEGG:mmu:268281 UCSC:uc007ejp.1 UCSC:uc007ejq.1 InParanoid:Q7TPQ3
OMA:FEGLVKQ ChiTaRS:SHPRH NextBio:392208 Bgee:Q7TPQ3
CleanEx:MM_SHPRH Genevestigator:Q7TPQ3 Uniprot:Q7TPQ3
Length = 1674
Score = 157 (60.3 bits), Expect = 1.8e-16, Sum P(4) = 1.8e-16
Identities = 35/106 (33%), Positives = 54/106 (50%)
Query: 898 VAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFR 957
+ PL V W+R+ LDEAQ ++ + A L RWC+SGTP+Q ++DL+
Sbjct: 795 IPSPLVAVEWWRICLDEAQMVECPTVKAAEMAQRLSGINRWCISGTPVQRGLEDLFGLVV 854
Query: 958 FLRYDPFAVYKSFCSMIKVPI-SKNPVKGYKKLQAVLKTIMLRRTK 1002
FL +P+ V + ++ P KNP + L + + IM R K
Sbjct: 855 FLGIEPYCVKHWWIRLLYHPYCKKNP----QHLYSFIAKIMWRSAK 896
Score = 110 (43.8 bits), Expect = 1.8e-16, Sum P(4) = 1.8e-16
Identities = 25/63 (39%), Positives = 37/63 (58%)
Query: 780 TLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTK--DPCELAKFDVVITTYSIVS 837
TL++ P+S+ QW +E+ V S SL VLVY G + P LA+ D+VI TY ++
Sbjct: 709 TLIISPSSICHQWVDEINRHVRSS-SLRVLVYQGVKKHGFLQPHFLAEQDIVIITYDVLR 767
Query: 838 MEV 840
E+
Sbjct: 768 SEL 770
Score = 79 (32.9 bits), Expect = 1.8e-16, Sum P(4) = 1.8e-16
Identities = 15/21 (71%), Positives = 18/21 (85%)
Query: 690 GGILADDQGLGKTISTIALIL 710
GGILAD+ GLGKT+ +ALIL
Sbjct: 363 GGILADEMGLGKTVEVLALIL 383
Score = 54 (24.1 bits), Expect = 1.8e-16, Sum P(4) = 1.8e-16
Identities = 10/19 (52%), Positives = 17/19 (89%)
Query: 665 VPLLR-HQRIALSWMVQKE 682
+P+LR +QR A++WM+Q+E
Sbjct: 296 IPVLRPYQREAVNWMLQQE 314
Score = 50 (22.7 bits), Expect = 9.1e-13, Sum P(3) = 9.1e-13
Identities = 13/41 (31%), Positives = 22/41 (53%)
Query: 704 STIALILKERPPSFRTEDDNKRQLETLNL---DEEDNGIQV 741
S+ +I+ E PP D KR+ ET+++ EE+ + V
Sbjct: 49 SSDCIIIDEGPPESALHRDKKRRSETVSVLEATEEETRLSV 89
>DICTYBASE|DDB_G0287171 [details] [associations]
symbol:DDB_G0287171 "CHR group protein" species:44689
"Dictyostelium discoideum" [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0046872 "metal ion binding"
evidence=IEA] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF13639 PROSITE:PS50089
PROSITE:PS51194 SMART:SM00184 dictyBase:DDB_G0287171
Prosite:PS00518 GO:GO:0005524 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 GO:GO:0004386 InterPro:IPR017907
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
EMBL:AAFI02000098 KO:K15710 RefSeq:XP_637376.1
ProteinModelPortal:Q54KQ4 EnsemblProtists:DDB0233435 GeneID:8625998
KEGG:ddi:DDB_G0287171 InParanoid:Q54KQ4 OMA:QKKANEC Uniprot:Q54KQ4
Length = 1872
Score = 168 (64.2 bits), Expect = 2.1e-16, Sum P(4) = 2.1e-16
Identities = 32/100 (32%), Positives = 59/100 (59%)
Query: 905 VGWFRVVLDEAQSIKNH-RTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDP 963
+ W+R+ LDEAQ +++ +T+ + GL + RWCL+GTPIQ ++DD++ F FLR +P
Sbjct: 847 IKWWRICLDEAQMVESSSQTKYKKLALGLESHYRWCLTGTPIQRSLDDMFGLFEFLRLEP 906
Query: 964 FAV-YKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTK 1002
F+ Y C ++ ++ ++ ++M+R +K
Sbjct: 907 FSSRYWWNCIILHKYLALGEQSFLDWFHCIVHSVMIRNSK 946
Score = 114 (45.2 bits), Expect = 2.1e-16, Sum P(4) = 2.1e-16
Identities = 23/59 (38%), Positives = 37/59 (62%)
Query: 780 TLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTK-DPCELAKFDVVITTYSIVS 837
TL+V P ++ QW EE+ V L V +Y+G + K +P +LA +D+V+TTY ++S
Sbjct: 762 TLIVAPNTIFTQWQEEI---VKHTNGLKVYIYNGIYKDKINPFQLADYDLVLTTYDVLS 817
Score = 79 (32.9 bits), Expect = 2.1e-16, Sum P(4) = 2.1e-16
Identities = 15/38 (39%), Positives = 22/38 (57%)
Query: 678 MVQKETSSLHCSGGILADDQGLGKTISTIALILKERPP 715
++ + L GGILAD+ GLGKT+ + L+L P
Sbjct: 539 LLSDKKDDLSLMGGILADEMGLGKTVEFLGLVLSHPKP 576
Score = 40 (19.1 bits), Expect = 2.1e-16, Sum P(4) = 2.1e-16
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 417 VEPIDEAVGRNSSYHDGCNSFPFKDS 442
+E +DE ++SS +D NS DS
Sbjct: 357 IEMVDEPDNQDSSNNDHNNSLSTIDS 382
>UNIPROTKB|E1BLB1 [details] [associations]
symbol:SHPRH "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0008270 "zinc ion binding" evidence=IEA] [GO:0006334
"nucleosome assembly" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0000786 "nucleosome" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR001965 InterPro:IPR005818 Pfam:PF00176 Pfam:PF00538
Pfam:PF13639 PROSITE:PS50089 PROSITE:PS51194 PROSITE:PS51504
SMART:SM00184 SMART:SM00249 SMART:SM00490 SMART:SM00526
Prosite:PS00518 GO:GO:0005524 GO:GO:0005634 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 Gene3D:1.10.10.10 InterPro:IPR011991
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 GO:GO:0004386 InterPro:IPR019786 PROSITE:PS01359
InterPro:IPR017907 InterPro:IPR014001 SMART:SM00487 GO:GO:0006334
GO:GO:0000786 GeneTree:ENSGT00700000104571 OMA:FEGLVKQ
EMBL:DAAA02026947 IPI:IPI00711948 Ensembl:ENSBTAT00000010673
Uniprot:E1BLB1
Length = 1688
Score = 153 (58.9 bits), Expect = 4.6e-16, Sum P(5) = 4.6e-16
Identities = 30/86 (34%), Positives = 46/86 (53%)
Query: 898 VAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFR 957
+ PL V W+R+ LDEAQ ++ + A L RWC+SGTP+Q ++DL+
Sbjct: 809 IPSPLVAVEWWRICLDEAQMVECPAVKAAEMAQRLSGINRWCISGTPVQRGLEDLFGLVV 868
Query: 958 FLRYDPFAVYKSFCSMIKVPI-SKNP 982
FL +P+ V + ++ P KNP
Sbjct: 869 FLGVEPYCVRHWWVRLLYRPYCKKNP 894
Score = 111 (44.1 bits), Expect = 4.6e-16, Sum P(5) = 4.6e-16
Identities = 25/63 (39%), Positives = 37/63 (58%)
Query: 780 TLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTK--DPCELAKFDVVITTYSIVS 837
TL++ P+S+ QW +E+ V S SL VLVY G + P LA+ D+VI TY ++
Sbjct: 723 TLIISPSSICHQWVDEINRHVRSS-SLRVLVYQGVKKDGFLQPHFLAEQDIVIITYDVLR 781
Query: 838 MEV 840
E+
Sbjct: 782 SEL 784
Score = 79 (32.9 bits), Expect = 4.6e-16, Sum P(5) = 4.6e-16
Identities = 15/21 (71%), Positives = 18/21 (85%)
Query: 690 GGILADDQGLGKTISTIALIL 710
GGILAD+ GLGKT+ +ALIL
Sbjct: 373 GGILADEMGLGKTVEVLALIL 393
Score = 51 (23.0 bits), Expect = 4.6e-16, Sum P(5) = 4.6e-16
Identities = 10/18 (55%), Positives = 16/18 (88%)
Query: 666 PLLR-HQRIALSWMVQKE 682
P+LR +QR A++WM+Q+E
Sbjct: 307 PVLRPYQREAVNWMLQQE 324
Score = 46 (21.3 bits), Expect = 4.6e-16, Sum P(5) = 4.6e-16
Identities = 14/44 (31%), Positives = 21/44 (47%)
Query: 493 DGRHLSLNLNGSRQYFPYAQPSTLNKKELD-GVKEDMEAEIKTR 535
D R+ L L Q +P PS ++ LD +KE++ K R
Sbjct: 28 DRRNEPLTLTDDEQSYPGLDPSPAHRIILDDSLKEEVAHREKKR 71
Score = 38 (18.4 bits), Expect = 3.2e-11, Sum P(3) = 3.2e-11
Identities = 12/49 (24%), Positives = 23/49 (46%)
Query: 711 KERPPSFRTEDDNKRQLETLNLDEEDNGIQVNGLDLVKQESDYCRVVPN 759
++R P R +++ ++QL N+ E+ L L E Y + P+
Sbjct: 5 RKRAPPVRVDEETQQQL-CWNMHEDRRN---EPLTLTDDEQSYPGLDPS 49
Score = 37 (18.1 bits), Expect = 3.6e-15, Sum P(5) = 3.6e-15
Identities = 11/37 (29%), Positives = 19/37 (51%)
Query: 79 KGDMRDIATYPLYGLEISGAESGGLGDSSSQLEPTEQ 115
K + +I +Y LE A+ L D+SS+++ Q
Sbjct: 205 KPEENNIIKVGIYLLEAGLAKPDFLSDASSRMKKFNQ 241
Score = 37 (18.1 bits), Expect = 0.00097, Sum P(3) = 0.00096
Identities = 5/10 (50%), Positives = 10/10 (100%)
Query: 237 YVDVPYTDAE 246
YVD+P++++E
Sbjct: 786 YVDIPHSNSE 795
>ASPGD|ASPL0000049992 [details] [associations]
symbol:AN2256 species:162425 "Emericella nidulans"
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0004842
"ubiquitin-protein ligase activity" evidence=IEA] [GO:0016567
"protein ubiquitination" evidence=IEA] [GO:0000151 "ubiquitin
ligase complex" evidence=IEA] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR014905 Pfam:PF00176 Pfam:PF00271
Pfam:PF08797 PROSITE:PS50089 PROSITE:PS51194 SMART:SM00184
SMART:SM00490 SMART:SM00910 GO:GO:0005524 GO:GO:0046872
GO:GO:0003677 EMBL:BN001307 GO:GO:0008270 Gene3D:3.30.40.10
InterPro:IPR013083 GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 KO:K15711 HOGENOM:HOG000172619
EMBL:AACD01000037 RefSeq:XP_659860.1 ProteinModelPortal:Q5BB24
EnsemblFungi:CADANIAT00008948 GeneID:2874756 KEGG:ani:AN2256.2
OMA:IVGVRYY OrthoDB:EOG4G1QQQ Uniprot:Q5BB24
Length = 972
Score = 181 (68.8 bits), Expect = 5.6e-16, Sum P(4) = 5.6e-16
Identities = 47/105 (44%), Positives = 61/105 (58%)
Query: 902 LAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRY 961
L V W RVVLDE +I+N R++ A LRA RW L+GTPI N + DLYS RFL
Sbjct: 515 LFSVKWRRVVLDEGHTIRNPRSKGFSAACALRADSRWALTGTPIVNTLKDLYSQIRFLGL 574
Query: 962 ----DPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTK 1002
+ FAV+ S +I+ +S +P LQA++ TI LRR K
Sbjct: 575 TGGLEDFAVFNSV--LIRPLMSDDP-DSRLLLQALMSTICLRRRK 616
Score = 107 (42.7 bits), Expect = 5.6e-16, Sum P(4) = 5.6e-16
Identities = 20/70 (28%), Positives = 39/70 (55%)
Query: 771 QAKGRPAA-GTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCELAKFDVV 829
Q K + ++ TL++ P ++ W +++ + + VL+YHG R +D L +DVV
Sbjct: 434 QPKTKESSKATLIISPVGIMSNWRNQIQEHTNPEQAPRVLIYHGPGRKED-ANLDHYDVV 492
Query: 830 ITTYSIVSME 839
+T+Y ++ E
Sbjct: 493 VTSYGTLATE 502
Score = 98 (39.6 bits), Expect = 7.7e-15, Sum P(5) = 7.7e-15
Identities = 22/39 (56%), Positives = 27/39 (69%)
Query: 689 SGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQL 727
SGGILADD GLGKTI I+LIL P +T++ +K L
Sbjct: 409 SGGILADDMGLGKTIQIISLILSNSQP--KTKESSKATL 445
Score = 57 (25.1 bits), Expect = 5.6e-16, Sum P(4) = 5.6e-16
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 663 LAVPLLRHQRIALSWMVQKETSSLHCS 689
L+ LL +QR L+WM+ KE L S
Sbjct: 351 LSTTLLPYQRQGLAWMISKENPGLPTS 377
Score = 39 (18.8 bits), Expect = 9.7e-08, Sum P(3) = 9.7e-08
Identities = 10/32 (31%), Positives = 16/32 (50%)
Query: 533 KTRSMASHLLKLSPESIQSN-SSDCKSHVDDE 563
KT+ + L +SP I SN + + H + E
Sbjct: 436 KTKESSKATLIISPVGIMSNWRNQIQEHTNPE 467
Score = 38 (18.4 bits), Expect = 5.6e-16, Sum P(4) = 5.6e-16
Identities = 15/59 (25%), Positives = 27/59 (45%)
Query: 504 SRQYFPYAQPSTLNKKELDGVKEDMEAEIKTRSMASHLLKLSPESIQSNSSDCKSHVDD 562
SR+ F Y + +K G + ++ TRS + L P+ ++S S+ H+ D
Sbjct: 10 SRKRFSYLNKVSGLRKRAPGWYILIRLQL-TRSPTKLEVPLQPKIMESRSTKRSIHLVD 67
Score = 38 (18.4 bits), Expect = 9.9e-16, Sum P(5) = 9.9e-16
Identities = 11/40 (27%), Positives = 20/40 (50%)
Query: 512 QPSTLNKKELDGVKEDMEAEIKTRSMASHLLKLSPESIQS 551
Q ST N +E++ V E +K + + + SP S+ +
Sbjct: 316 QSSTFNPREINRVTESFG--LKESDLENMPMVESPSSLST 353
Score = 38 (18.4 bits), Expect = 9.9e-16, Sum P(5) = 9.9e-16
Identities = 13/45 (28%), Positives = 19/45 (42%)
Query: 22 DQGLSIDMDTLLGILEEEKQPDRVKS-SPGDLSLRNLSQDELVQD 65
D L + L G++ P +K P DL R + +VQD
Sbjct: 203 DNRLLVVEGVLTGVIGAFDCPIVLKLYGPSDLERREALKQRMVQD 247
>RGD|1310342 [details] [associations]
symbol:Shprh "SNF2 histone linker PHD RING helicase, E3
ubiquitin protein ligase" species:10116 "Rattus norvegicus"
[GO:0000786 "nucleosome" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006334 "nucleosome assembly" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] InterPro:IPR001841
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR001965
InterPro:IPR005818 Pfam:PF00176 Pfam:PF00538 PROSITE:PS50089
PROSITE:PS51194 PROSITE:PS51504 SMART:SM00184 SMART:SM00249
SMART:SM00526 RGD:1310342 GO:GO:0005524 GO:GO:0005634 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 Gene3D:1.10.10.10 InterPro:IPR011991
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 GO:GO:0004386 InterPro:IPR019786 PROSITE:PS01359
InterPro:IPR014001 SMART:SM00487 GO:GO:0006334 GO:GO:0000786
GeneTree:ENSGT00700000104571 KO:K15710 CTD:257218 OrthoDB:EOG4G4GPJ
EMBL:CH473994 IPI:IPI00869721 RefSeq:NP_001100940.1 UniGene:Rn.2515
Ensembl:ENSRNOT00000019893 GeneID:308282 KEGG:rno:308282
UCSC:RGD:1310342 NextBio:658533 Uniprot:D4A9B2
Length = 1701
Score = 156 (60.0 bits), Expect = 5.8e-16, Sum P(5) = 5.8e-16
Identities = 35/106 (33%), Positives = 54/106 (50%)
Query: 898 VAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFR 957
+ PL V W+R+ LDEAQ ++ + A L RWC+SGTP+Q ++DL+
Sbjct: 802 IPSPLVAVEWWRICLDEAQMVECPTVKAAEMAQRLSGINRWCVSGTPVQRGLEDLFGLVV 861
Query: 958 FLRYDPFAVYKSFCSMIKVPI-SKNPVKGYKKLQAVLKTIMLRRTK 1002
FL +P+ V + ++ P KNP + L + + IM R K
Sbjct: 862 FLGIEPYCVKHWWIRLLYHPYCKKNP----QHLYSFIAKIMWRSAK 903
Score = 111 (44.1 bits), Expect = 5.8e-16, Sum P(5) = 5.8e-16
Identities = 25/63 (39%), Positives = 37/63 (58%)
Query: 780 TLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTK--DPCELAKFDVVITTYSIVS 837
TL++ P+S+ QW +E+ V S SL VLVY G + P LA+ D+VI TY ++
Sbjct: 716 TLIISPSSICHQWVDEINRHVRSS-SLRVLVYQGVKKDGFLQPHFLAEQDIVIITYDVLR 774
Query: 838 MEV 840
E+
Sbjct: 775 SEL 777
Score = 79 (32.9 bits), Expect = 5.8e-16, Sum P(5) = 5.8e-16
Identities = 15/21 (71%), Positives = 18/21 (85%)
Query: 690 GGILADDQGLGKTISTIALIL 710
GGILAD+ GLGKT+ +ALIL
Sbjct: 361 GGILADEMGLGKTVEVLALIL 381
Score = 54 (24.1 bits), Expect = 5.8e-16, Sum P(5) = 5.8e-16
Identities = 10/19 (52%), Positives = 17/19 (89%)
Query: 665 VPLLR-HQRIALSWMVQKE 682
+P+LR +QR A++WM+Q+E
Sbjct: 295 IPVLRPYQREAVNWMLQQE 313
Score = 41 (19.5 bits), Expect = 7.9e-12, Sum P(3) = 7.9e-12
Identities = 12/41 (29%), Positives = 20/41 (48%)
Query: 704 STIALILKERPPSFRTEDDNKRQLET---LNLDEEDNGIQV 741
S+ +I+ + PP D KR E+ LN E++ + V
Sbjct: 48 SSDCIIIDDDPPEGAAHRDKKRCTESVSILNSTEKETPLSV 88
Score = 41 (19.5 bits), Expect = 6.1e-11, Sum P(4) = 6.1e-11
Identities = 11/47 (23%), Positives = 20/47 (42%)
Query: 518 KKELDGVKEDMEAEIKTRSMASHLLKLSPESIQSNSSDCKSHVDDEP 564
KK+ G + +E E++ + P I + +D DD+P
Sbjct: 516 KKQAVGSPQKIEKELRKSVNKDTDSEYMPSDIYDDDNDNDDDDDDDP 562
Score = 39 (18.8 bits), Expect = 5.8e-16, Sum P(5) = 5.8e-16
Identities = 11/54 (20%), Positives = 28/54 (51%)
Query: 511 AQPSTLNKKELDGVKEDMEAEIKTRSMASHLLKLSPESIQSNSSDCKSHVDDEP 564
A P ++++ ++ +M +++ ++ L + ++SSDC +DD+P
Sbjct: 8 APPMKVDEERQQQLRWNMHEDLRNEPLS--LTEEERACWDADSSDCII-IDDDP 58
Score = 37 (18.1 bits), Expect = 6.1e-11, Sum P(4) = 6.1e-11
Identities = 21/67 (31%), Positives = 33/67 (49%)
Query: 41 QPDRVKSSPGDLSLRNLSQDELVQDVGSHSNLQLQSGFKGDMRDIATYPLYGLEISG--- 97
Q ++ +S+P D SL L + E+V G NL + G + I +P G ++ G
Sbjct: 311 QQEQFRSTPADNSLHFLWR-EIVTPDGL--NLYYNP-YTGCI--IRDFPHAGPQLLGGIL 364
Query: 98 AESGGLG 104
A+ GLG
Sbjct: 365 ADEMGLG 371
Score = 37 (18.1 bits), Expect = 0.00049, Sum P(3) = 0.00049
Identities = 5/10 (50%), Positives = 10/10 (100%)
Query: 237 YVDVPYTDAE 246
YVD+P++++E
Sbjct: 779 YVDIPHSNSE 788
>DICTYBASE|DDB_G0281949 [details] [associations]
symbol:helE "CHR group protein" species:44689
"Dictyostelium discoideum" [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0046872 "metal ion binding" evidence=IEA] InterPro:IPR001841
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS50089 PROSITE:PS51194 SMART:SM00184 SMART:SM00490
dictyBase:DDB_G0281949 Prosite:PS00518 GO:GO:0005524
GenomeReviews:CM000152_GR GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
GO:GO:0004386 EMBL:AAFI02000044 InterPro:IPR017907
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
ProtClustDB:CLSZ2430494 RefSeq:XP_640427.1
ProteinModelPortal:Q54T24 EnsemblProtists:DDB0215339 GeneID:8623380
KEGG:ddi:DDB_G0281949 InParanoid:Q54T24 OMA:NSFCDKI Uniprot:Q54T24
Length = 1540
Score = 260 (96.6 bits), Expect = 7.9e-16, Sum P(3) = 7.9e-16
Identities = 90/324 (27%), Positives = 139/324 (42%)
Query: 689 SGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGIQVNGLDLVK 748
SGG+L D GLGKT+ ++L LK P + + + +K E LN D Q L+K
Sbjct: 637 SGGMLCDKMGLGKTLMILSLSLKNHP-IYSSHEIHK---EILN----DIKPQ-----LIK 683
Query: 749 QESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTSVLRQWAEELRNKVTSK--GSL 806
+ Y + S S + K TLV+ P SVL+QW +L + L
Sbjct: 684 RRKKYFIGTDSSSDLSSSSSSSPTKITLPKSTLVILPFSVLKQWRNQLELHLQPDFLKKL 743
Query: 807 SVLVYHGSSR---TKDPCELAKFDVVITTYSIVSMEVPKQPLGXXXXXXXXXXXXXXXLP 863
++++YHG++R T+D +L K D V TT+ S+E +P
Sbjct: 744 NIIIYHGTNRKSITQD--QLIKADFVFTTHQTFSIEYSFYEKERKNKSSSAISTSLIPIP 801
Query: 864 PMYXXXXXXXXXXXXXXXXGSKQKKGPDGLLLD----IVAGPLAKVGWFRVVLDEAQSIK 919
+ + + + I+ PL + W+RV++DE+ K
Sbjct: 802 LINEDVIITTTTTTTTTTNNNNSNNNNNQKQISSKFTIIPPPLLCIHWWRVIIDESHKFK 861
Query: 920 NHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAVYKSFCSMIKVPIS 979
H++ R+ L + RWCL+GTP QN DL+ FL P A K+ + K+ S
Sbjct: 862 -HKSLFFRSLQNLDSVNRWCLTGTPYQNNCTDLFPMLYFLNVFPIA--KNIATWRKLVES 918
Query: 980 KNPVKGYKK-LQAVLKTIMLRRTK 1002
KK L+ L I+L R+K
Sbjct: 919 IQDQSEKKKILKKYLNPIILSRSK 942
Score = 45 (20.9 bits), Expect = 7.9e-16, Sum P(3) = 7.9e-16
Identities = 9/29 (31%), Positives = 16/29 (55%)
Query: 667 LLRHQRIALSWMVQKETSSLHCSGGILAD 695
LL HQ+ + WM ++E +G L++
Sbjct: 574 LLEHQKEGIWWMRKRELEPFITNGQTLSE 602
Score = 37 (18.1 bits), Expect = 7.9e-16, Sum P(3) = 7.9e-16
Identities = 10/38 (26%), Positives = 18/38 (47%)
Query: 370 ITLGDGKRSAQPCTYSHSHSSRTKQMVFAKDEGNDDLF 407
I++ D + + S + R + F+KDE DD +
Sbjct: 127 ISIDDDEEIIDDIPFVDSENCRIT-IDFSKDEHEDDYY 163
>UNIPROTKB|H7C5K0 [details] [associations]
symbol:HLTF "Helicase-like transcription factor"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50089 PROSITE:PS51194
SMART:SM00184 SMART:SM00490 Prosite:PS00518 GO:GO:0005524
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10
InterPro:IPR013083 GO:GO:0004386 InterPro:IPR017907
InterPro:IPR014001 PROSITE:PS51192 HGNC:HGNC:11099 EMBL:AC021059
ProteinModelPortal:H7C5K0 Ensembl:ENST00000467858 Bgee:H7C5K0
Uniprot:H7C5K0
Length = 425
Score = 216 (81.1 bits), Expect = 2.6e-14, P = 2.6e-14
Identities = 42/102 (41%), Positives = 64/102 (62%)
Query: 901 PLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLR 960
PL + W RV+LDE +I+N Q +A L ++RRW L+GTPIQN++ DL+S FL+
Sbjct: 9 PLHSIRWLRVILDEGHAIRNPNAQQTKAVLDLESERRWVLTGTPIQNSLKDLWSLLSFLK 68
Query: 961 YDPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTK 1002
PF + + I+ P++ G ++LQ+++K I LRRTK
Sbjct: 69 LKPFIDREWWHRTIQRPVTMGDEGGLRRLQSLIKNITLRRTK 110
>UNIPROTKB|G3N326 [details] [associations]
symbol:LOC788113 "Uncharacterized protein" species:9913
"Bos taurus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] InterPro:IPR000330 Pfam:PF00176
GO:GO:0005524 GO:GO:0003677 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529
PROSITE:PS51204 GeneTree:ENSGT00530000063427 EMBL:DAAA02057908
Ensembl:ENSBTAT00000063921 Uniprot:G3N326
Length = 934
Score = 141 (54.7 bits), Expect = 5.5e-14, Sum P(3) = 5.5e-14
Identities = 35/104 (33%), Positives = 59/104 (56%)
Query: 907 WFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAV 966
W ++LDEAQ+IKN ++Q ++ ++RR L+GTP+QN++ +L+S FL F
Sbjct: 730 WRYLILDEAQNIKNFKSQRWQSLLNFNSQRRLLLTGTPLQNSLMELWSLMHFLMPHVFQS 789
Query: 967 YKSFCSMIKVPISKNPVKG---Y-----KKLQAVLKTIMLRRTK 1002
++ F P++ ++G Y K+L VL+ +LRR K
Sbjct: 790 HREFKEWFSNPLT-GMIEGSQEYNEGLVKRLHKVLRPFLLRRVK 832
Score = 116 (45.9 bits), Expect = 5.5e-14, Sum P(3) = 5.5e-14
Identities = 52/201 (25%), Positives = 88/201 (43%)
Query: 517 NKKELDGVKEDMEAEIKTRSMASHLLKLSPESIQSNSSDCKSHVDDEPDICILEDISQPA 576
++ E++ D E E T + + S QS+S++ +S +DE + E+ S+ +
Sbjct: 454 DEDEVEANSSDCEPEGATEAEEA---PQEDSSSQSDSAEEQSEDEDE-EHSEEEETSESS 509
Query: 577 RSNQSLVLGKTLSMNRSACSNHSVA---LGKPVVTSQHSSYSDYPGYPGVPLTGLG---G 630
S +S S ++S G + ++ S+ G G P G G
Sbjct: 510 ESEESESEESEESQSQSQADEEEEEDDDFGVEYLLARDEEQSEADGGSGPPTPGPTTTLG 569
Query: 631 MKSKASDERLILQ-VAMQGISQPNAEASAPDGVLAVPLLR-HQRIALSWMVQKETSSLHC 688
K + +D + + +G + + P +L LR +Q I L W+V L+
Sbjct: 570 PKKEITDIAAAAESLQPKGYTLATTQVKTPIPLLLRGQLREYQHIGLDWLVTMYEKKLN- 628
Query: 689 SGGILADDQGLGKTISTIALI 709
GILAD+ GLGKTI TI+L+
Sbjct: 629 --GILADEMGLGKTIQTISLL 647
Score = 64 (27.6 bits), Expect = 5.5e-14, Sum P(3) = 5.5e-14
Identities = 18/61 (29%), Positives = 29/61 (47%)
Query: 781 LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCELA-----KFDVVITTYSI 835
L++ PTSV+ W EL+ S +L Y+G+ + + F V IT+Y +
Sbjct: 661 LIIVPTSVMLNWEMELKRWCPS---FKILTYYGAQKERKLKRQGWTKPNAFHVCITSYKL 717
Query: 836 V 836
V
Sbjct: 718 V 718
Score = 43 (20.2 bits), Expect = 1.3e-06, Sum P(3) = 1.3e-06
Identities = 22/85 (25%), Positives = 38/85 (44%)
Query: 411 STVSDSVEPIDEAVGRNSSYHDGCNSFPFKDSGQSFIGLSPSLLSQNQVVHAKEEHEDLI 470
S+ SDS E +++ + + + + +S +S S SQ+Q +EE +D
Sbjct: 482 SSQSDSAE--EQSEDEDEEHSEEEETSESSESEESESEESEESQSQSQADEEEEEDDDFG 539
Query: 471 LESKRARFCQEI-CDGSSSRSPIDG 494
+E AR ++ DG S P G
Sbjct: 540 VEYLLARDEEQSEADGGSG-PPTPG 563
Score = 38 (18.4 bits), Expect = 3.9e-06, Sum P(3) = 3.9e-06
Identities = 18/92 (19%), Positives = 36/92 (39%)
Query: 243 TDAEVSSHNVASTDSTICHGSEIISDDDYYSAMPCYINTGDTIFGDPSSFNFQHLLSSEE 302
T+AE + +S+ S + +D+ +S T ++ + S S+
Sbjct: 471 TEAEEAPQEDSSSQSDSAE-EQSEDEDEEHSEEE---ETSESSESEESESEESEESQSQS 526
Query: 303 TATKPKDEEGEFTTEIACSSSGLVLNAQGGPG 334
A + ++E+ +F E + A GG G
Sbjct: 527 QADEEEEEDDDFGVEYLLARDEEQSEADGGSG 558
>MGI|MGI:2444036 [details] [associations]
symbol:Srcap "Snf2-related CREBBP activator protein"
species:10090 "Mus musculus" [GO:0003674 "molecular_function"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
[GO:0043234 "protein complex" evidence=ISO] InterPro:IPR000330
Pfam:PF00176 MGI:MGI:2444036 GO:GO:0005524 GO:GO:0005634
GO:GO:0005794 GO:GO:0043234 GO:GO:0003677 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 PROSITE:PS51204 GeneTree:ENSGT00530000063427
EMBL:AC136146 EMBL:AC122417 IPI:IPI00988884
ProteinModelPortal:E9Q9V7 SMR:E9Q9V7 Ensembl:ENSMUST00000066582
OMA:VIQDHQA Bgee:E9Q9V7 Uniprot:E9Q9V7
Length = 936
Score = 141 (54.7 bits), Expect = 5.8e-14, Sum P(5) = 5.8e-14
Identities = 35/104 (33%), Positives = 59/104 (56%)
Query: 907 WFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAV 966
W ++LDEAQ+IKN ++Q ++ ++RR L+GTP+QN++ +L+S FL F
Sbjct: 732 WRYLILDEAQNIKNFKSQRWQSLLNFNSQRRLLLTGTPLQNSLMELWSLMHFLMPHVFQS 791
Query: 967 YKSFCSMIKVPISKNPVKG---Y-----KKLQAVLKTIMLRRTK 1002
++ F P++ ++G Y K+L VL+ +LRR K
Sbjct: 792 HREFKEWFSNPLT-GMIEGSQEYNEGLVKRLHKVLRPFLLRRVK 834
Score = 109 (43.4 bits), Expect = 5.8e-14, Sum P(5) = 5.8e-14
Identities = 33/93 (35%), Positives = 44/93 (47%)
Query: 618 PGYPGVPLTGLGGMKSKASDERLILQVAMQGISQPNAEASAPDGVLAVPLLR-HQRIALS 676
P PG P T LG K + +G + + P +L LR +Q I L
Sbjct: 561 PPTPG-PTTTLGPKKEITDIAAAAESLQPKGYTLATTQVKTPIPLLLRGQLREYQHIGLD 619
Query: 677 WMVQKETSSLHCSGGILADDQGLGKTISTIALI 709
W+V L+ GILAD+ GLGKTI TI+L+
Sbjct: 620 WLVTMYEKKLN---GILADEMGLGKTIQTISLL 649
Score = 64 (27.6 bits), Expect = 5.8e-14, Sum P(5) = 5.8e-14
Identities = 18/61 (29%), Positives = 29/61 (47%)
Query: 781 LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCELA-----KFDVVITTYSI 835
L++ PTSV+ W EL+ S +L Y+G+ + + F V IT+Y +
Sbjct: 663 LIIVPTSVMLNWEMELKRWCPS---FKILTYYGAQKERKLKRQGWTKPNAFHVCITSYKL 719
Query: 836 V 836
V
Sbjct: 720 V 720
Score = 46 (21.3 bits), Expect = 5.8e-14, Sum P(5) = 5.8e-14
Identities = 13/54 (24%), Positives = 21/54 (38%)
Query: 512 QPSTLNKKELDGVKEDMEAEIKTRSMASHLLKLSPESIQSNSSDCKSHVDDEPD 565
+ S+ + ED E E M+ ES +S + +S D+E D
Sbjct: 471 EDSSSQSDSAEECSEDEEDEHSEEEMSGSSQSEESESDESEDAQSQSQADEEQD 524
Score = 45 (20.9 bits), Expect = 5.8e-14, Sum P(5) = 5.8e-14
Identities = 25/106 (23%), Positives = 40/106 (37%)
Query: 17 DEFADDQGLSIDMDTLLGILEEEKQPDRVKSSPGDLSLRN-LSQDELVQDVGSHSNLQLQ 75
+EF ++ + DT+ + E + D +L+ LS +EL+Q
Sbjct: 381 EEFTANEDEEDEEDTIAAEEQLEGEVDHAMEL-SELAREGELSMEELLQQYAGAYACDAS 439
Query: 76 SGFKGDMRD---IATYPLYGLEISGAESGGLGDSSSQLEPTEQKCS 118
+ GD D + G E DSSSQ + E+ CS
Sbjct: 440 APASGDSEDEDEVEANSSDGELEETVEEAAQEDSSSQSDSAEE-CS 484
Score = 44 (20.5 bits), Expect = 2.3e-13, Sum P(5) = 2.3e-13
Identities = 18/63 (28%), Positives = 29/63 (46%)
Query: 523 GVKEDMEAEIKTRSMASHLLKLSPESIQSNSSDCKSHVD----DEPDICILEDISQPARS 578
G ED E E++ S L + E+ Q +SS + DE D E++S ++S
Sbjct: 444 GDSED-EDEVEANSSDGELEETVEEAAQEDSSSQSDSAEECSEDEEDEHSEEEMSGSSQS 502
Query: 579 NQS 581
+S
Sbjct: 503 EES 505
Score = 41 (19.5 bits), Expect = 1.4e-13, Sum P(5) = 1.4e-13
Identities = 13/46 (28%), Positives = 18/46 (39%)
Query: 376 KRSAQPCTYSHSHSSRTKQMVFAKDEGNDDLFPCWSTVSDSVEPID 421
K + PC S S +S V D+ + D P D E I+
Sbjct: 240 KAGSSPCLGSSSAASSPPPPVSRLDDEDGDFQPQEEEEEDDEETIE 285
Score = 41 (19.5 bits), Expect = 5.1e-13, Sum P(4) = 5.1e-13
Identities = 9/17 (52%), Positives = 11/17 (64%)
Query: 14 SAADEFADDQGLSIDMD 30
S ADE DD+G D+D
Sbjct: 517 SQADEEQDDEGEDDDVD 533
>UNIPROTKB|O53499 [details] [associations]
symbol:helZ "PROBABLE HELICASE HELZ" species:83332
"Mycobacterium tuberculosis H37Rv" [GO:0005618 "cell wall"
evidence=IDA] [GO:0005829 "cytosol" evidence=IDA] [GO:0005886
"plasma membrane" evidence=IDA] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005829 GO:GO:0005886 GO:GO:0005524
GO:GO:0005618 GenomeReviews:AL123456_GR GO:GO:0003677 EMBL:BX842578
GO:GO:0004386 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
PIR:B70841 RefSeq:NP_216617.1 ProteinModelPortal:O53499 SMR:O53499
EnsemblBacteria:EBMYCT00000002428 GeneID:888635 KEGG:mtu:Rv2101
PATRIC:18153236 TubercuList:Rv2101 HOGENOM:HOG000099451 OMA:PYQERGL
ProtClustDB:CLSK872005 InterPro:IPR022138 Pfam:PF12419
Uniprot:O53499
Length = 1013
Score = 157 (60.3 bits), Expect = 6.0e-14, Sum P(4) = 6.0e-14
Identities = 37/108 (34%), Positives = 63/108 (58%)
Query: 902 LAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRY 961
LA+ W RVVLDEAQ++KN ++ A+A LRA R L+GTP++N + +L+S FL
Sbjct: 651 LAEYEWNRVVLDEAQAVKNSLSRAAKAVRRLRAAHRVALTGTPMENRLAELWSIMDFLNP 710
Query: 962 DPFAVYKSFCSMIKVPISKNP-VKGYKKLQAVLKTIMLRRTKGEDCLL 1008
+ F + +PI ++ + ++L+A + +LRR K + ++
Sbjct: 711 GLLGSSERFRTRYAIPIERHGHTEPAERLRASTRPYILRRLKTDPAII 758
Score = 83 (34.3 bits), Expect = 6.0e-14, Sum P(4) = 6.0e-14
Identities = 21/50 (42%), Positives = 28/50 (56%)
Query: 659 PDGVLAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIAL 708
PDG A L +Q+ L+W+ + L G LADD GLGKT+ +AL
Sbjct: 526 PDGFTAT-LRPYQQRGLAWLAFLSSLGL---GSCLADDMGLGKTVQLLAL 571
Score = 81 (33.6 bits), Expect = 6.0e-14, Sum P(4) = 6.0e-14
Identities = 19/75 (25%), Positives = 38/75 (50%)
Query: 769 VEQAKGRPAAGTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPC---ELAK 825
V++ + R TL++CP S++ W +E + L V +HG +R L +
Sbjct: 577 VQRHQDRGVGPTLLLCPMSLVGNWPQEAARFAPN---LRVYAHHGGARLHGEALRDHLER 633
Query: 826 FDVVITTYSIVSMEV 840
D+V++TY+ + ++
Sbjct: 634 TDLVVSTYTTATRDI 648
Score = 44 (20.5 bits), Expect = 6.0e-14, Sum P(4) = 6.0e-14
Identities = 21/88 (23%), Positives = 33/88 (37%)
Query: 199 VDASPSSITENFDERYG--HYGASIGNRLGSSVPEGNLCTYVDVPYTDAEVSSHNVASTD 256
VD P++ FD+ YGAS+ +V L V +H A+
Sbjct: 98 VDLDPTAALAAFDQPAPDVRYGASVDYLAELAVFARELVERGRV-LPQLRRDTHGAAACW 156
Query: 257 STICHGSEIISDDDYYSAMP--CYINTG 282
+ G ++++ SAMP C G
Sbjct: 157 RPVLQGRDVVAMTSLVSAMPPVCRAEVG 184
>UNIPROTKB|J9PA15 [details] [associations]
symbol:SRCAP "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR000330
Pfam:PF00176 GO:GO:0005524 GO:GO:0003677 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 PROSITE:PS51204 GeneTree:ENSGT00530000063427
EMBL:AAEX03004381 EMBL:AAEX03004385 EMBL:AAEX03004386
EMBL:AAEX03004382 EMBL:AAEX03004383 EMBL:AAEX03004384
EMBL:AAEX03004387 EMBL:AAEX03004388 Ensembl:ENSCAFT00000048702
Uniprot:J9PA15
Length = 1555
Score = 141 (54.7 bits), Expect = 2.5e-13, Sum P(4) = 2.5e-13
Identities = 35/104 (33%), Positives = 59/104 (56%)
Query: 907 WFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAV 966
W ++LDEAQ+IKN ++Q ++ ++RR L+GTP+QN++ +L+S FL F
Sbjct: 746 WRYLILDEAQNIKNFKSQRWQSLLNFNSQRRLLLTGTPLQNSLMELWSLMHFLMPHVFQS 805
Query: 967 YKSFCSMIKVPISKNPVKG---Y-----KKLQAVLKTIMLRRTK 1002
++ F P++ ++G Y K+L VL+ +LRR K
Sbjct: 806 HREFKEWFSNPLT-GMIEGSQEYNEGLVKRLHKVLRPFLLRRVK 848
Score = 115 (45.5 bits), Expect = 2.5e-13, Sum P(4) = 2.5e-13
Identities = 52/202 (25%), Positives = 85/202 (42%)
Query: 517 NKKELDGVKEDMEAEIKTRSMASHLLKLSPESIQSNSSDCKSHVDDEPDI-CILEDISQP 575
+++E++ D EAE T + + PE S S + ++E D E+ S
Sbjct: 470 DEEEVEANSSDCEAEGATEAEEAR-----PEDSSSQSESAEEQSEEEEDEHSEEEETSGS 524
Query: 576 ARSNQSLVLGKTLSMNRSACSNHSVA---LGKPVVTSQHSSYSDYPGYPGVPLTGLG--- 629
+ S +S S ++S G + ++ S+ G G P G
Sbjct: 525 SESEESESEESEESGSQSQADEEEEEDDDFGVEYLLARDEEQSEADGGSGPPTPGPTATL 584
Query: 630 GMKSKASDERLILQ-VAMQGISQPNAEASAPDGVLAVPLLR-HQRIALSWMVQKETSSLH 687
G K + +D + + +G + + P +L LR +Q I L W+V L+
Sbjct: 585 GPKKEITDIAAAAESLQPKGYTLATTQVKTPIPLLLRGQLREYQHIGLDWLVTMYEKKLN 644
Query: 688 CSGGILADDQGLGKTISTIALI 709
GILAD+ GLGKTI TI+L+
Sbjct: 645 ---GILADEMGLGKTIQTISLL 663
Score = 64 (27.6 bits), Expect = 2.5e-13, Sum P(4) = 2.5e-13
Identities = 18/61 (29%), Positives = 29/61 (47%)
Query: 781 LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCELA-----KFDVVITTYSI 835
L++ PTSV+ W EL+ S +L Y+G+ + + F V IT+Y +
Sbjct: 677 LIIVPTSVMLNWEMELKRWCPS---FKILTYYGAQKERKLKRQGWTKPNAFHVCITSYKL 733
Query: 836 V 836
V
Sbjct: 734 V 734
Score = 48 (22.0 bits), Expect = 2.5e-13, Sum P(4) = 2.5e-13
Identities = 18/62 (29%), Positives = 24/62 (38%)
Query: 363 YGNSLS---NITLGDGKRSAQPCTYSHSHSSRTKQMVFAKDEGNDDLFPCWSTVSDSVEP 419
Y + LS N L K + PC S S +S V D+ + D P D E
Sbjct: 243 YSDLLSQSLNQPLASSKAGSSPCLGSSSAASSPPPPVSRLDDEDGDFQPQEEEEEDDEET 302
Query: 420 ID 421
I+
Sbjct: 303 IE 304
Score = 39 (18.8 bits), Expect = 8.4e-05, Sum P(4) = 8.4e-05
Identities = 26/109 (23%), Positives = 45/109 (41%)
Query: 12 EVSAADEFADDQGLSIDMDTLL-GILEEEKQPDRVKSSPGDLSLRNLSQDELVQDVGSHS 70
E +A ++ A+D+ +I + L G ++ + + + G+LS+ L Q S
Sbjct: 401 EFTANEDEAEDEEETIAAEEQLEGEVDHAMELSEL-AREGELSMEELLQQYAGAYASDAS 459
Query: 71 NLQLQSGFKGDMRDIATYPLYGLEISGA---ESGGLGDSSSQLEPTEQK 116
S + D ++ E GA E DSSSQ E E++
Sbjct: 460 GPGSGSSEEEDEEEVEANSS-DCEAEGATEAEEARPEDSSSQSESAEEQ 507
Score = 37 (18.1 bits), Expect = 1.2e-05, Sum P(4) = 1.2e-05
Identities = 14/41 (34%), Positives = 20/41 (48%)
Query: 455 SQNQVVHAKEEHEDLILESKRARFCQEI-CDGSSSRSPIDG 494
SQ+Q +EE +D +E AR ++ DG S P G
Sbjct: 540 SQSQADEEEEEDDDFGVEYLLARDEEQSEADGGSG-PPTPG 579
Score = 37 (18.1 bits), Expect = 8.4e-05, Sum P(4) = 8.4e-05
Identities = 9/35 (25%), Positives = 16/35 (45%)
Query: 300 SEETATKPKDEEGEFTTEIACSSSGLVLNAQGGPG 334
S+ A + ++E+ +F E + A GG G
Sbjct: 540 SQSQADEEEEEDDDFGVEYLLARDEEQSEADGGSG 574
>UNIPROTKB|F6XHF3 [details] [associations]
symbol:SRCAP "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR000330
Pfam:PF00176 GO:GO:0005524 GO:GO:0003677 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 PROSITE:PS51204 GeneTree:ENSGT00530000063427
EMBL:AAEX03004381 EMBL:AAEX03004385 EMBL:AAEX03004386
Ensembl:ENSCAFT00000026363 EMBL:AAEX03004382 EMBL:AAEX03004383
EMBL:AAEX03004384 EMBL:AAEX03004387 EMBL:AAEX03004388
Uniprot:F6XHF3
Length = 1823
Score = 141 (54.7 bits), Expect = 4.9e-13, Sum P(4) = 4.9e-13
Identities = 35/104 (33%), Positives = 59/104 (56%)
Query: 907 WFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAV 966
W ++LDEAQ+IKN ++Q ++ ++RR L+GTP+QN++ +L+S FL F
Sbjct: 746 WRYLILDEAQNIKNFKSQRWQSLLNFNSQRRLLLTGTPLQNSLMELWSLMHFLMPHVFQS 805
Query: 967 YKSFCSMIKVPISKNPVKG---Y-----KKLQAVLKTIMLRRTK 1002
++ F P++ ++G Y K+L VL+ +LRR K
Sbjct: 806 HREFKEWFSNPLT-GMIEGSQEYNEGLVKRLHKVLRPFLLRRVK 848
Score = 115 (45.5 bits), Expect = 4.9e-13, Sum P(4) = 4.9e-13
Identities = 52/202 (25%), Positives = 85/202 (42%)
Query: 517 NKKELDGVKEDMEAEIKTRSMASHLLKLSPESIQSNSSDCKSHVDDEPDI-CILEDISQP 575
+++E++ D EAE T + + PE S S + ++E D E+ S
Sbjct: 470 DEEEVEANSSDCEAEGATEAEEAR-----PEDSSSQSESAEEQSEEEEDEHSEEEETSGS 524
Query: 576 ARSNQSLVLGKTLSMNRSACSNHSVA---LGKPVVTSQHSSYSDYPGYPGVPLTGLG--- 629
+ S +S S ++S G + ++ S+ G G P G
Sbjct: 525 SESEESESEESEESGSQSQADEEEEEDDDFGVEYLLARDEEQSEADGGSGPPTPGPTATL 584
Query: 630 GMKSKASDERLILQ-VAMQGISQPNAEASAPDGVLAVPLLR-HQRIALSWMVQKETSSLH 687
G K + +D + + +G + + P +L LR +Q I L W+V L+
Sbjct: 585 GPKKEITDIAAAAESLQPKGYTLATTQVKTPIPLLLRGQLREYQHIGLDWLVTMYEKKLN 644
Query: 688 CSGGILADDQGLGKTISTIALI 709
GILAD+ GLGKTI TI+L+
Sbjct: 645 ---GILADEMGLGKTIQTISLL 663
Score = 64 (27.6 bits), Expect = 4.9e-13, Sum P(4) = 4.9e-13
Identities = 18/61 (29%), Positives = 29/61 (47%)
Query: 781 LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCELA-----KFDVVITTYSI 835
L++ PTSV+ W EL+ S +L Y+G+ + + F V IT+Y +
Sbjct: 677 LIIVPTSVMLNWEMELKRWCPS---FKILTYYGAQKERKLKRQGWTKPNAFHVCITSYKL 733
Query: 836 V 836
V
Sbjct: 734 V 734
Score = 48 (22.0 bits), Expect = 4.9e-13, Sum P(4) = 4.9e-13
Identities = 18/62 (29%), Positives = 24/62 (38%)
Query: 363 YGNSLS---NITLGDGKRSAQPCTYSHSHSSRTKQMVFAKDEGNDDLFPCWSTVSDSVEP 419
Y + LS N L K + PC S S +S V D+ + D P D E
Sbjct: 243 YSDLLSQSLNQPLASSKAGSSPCLGSSSAASSPPPPVSRLDDEDGDFQPQEEEEEDDEET 302
Query: 420 ID 421
I+
Sbjct: 303 IE 304
Score = 39 (18.8 bits), Expect = 0.00016, Sum P(4) = 0.00016
Identities = 26/109 (23%), Positives = 45/109 (41%)
Query: 12 EVSAADEFADDQGLSIDMDTLL-GILEEEKQPDRVKSSPGDLSLRNLSQDELVQDVGSHS 70
E +A ++ A+D+ +I + L G ++ + + + G+LS+ L Q S
Sbjct: 401 EFTANEDEAEDEEETIAAEEQLEGEVDHAMELSEL-AREGELSMEELLQQYAGAYASDAS 459
Query: 71 NLQLQSGFKGDMRDIATYPLYGLEISGA---ESGGLGDSSSQLEPTEQK 116
S + D ++ E GA E DSSSQ E E++
Sbjct: 460 GPGSGSSEEEDEEEVEANSS-DCEAEGATEAEEARPEDSSSQSESAEEQ 507
Score = 37 (18.1 bits), Expect = 2.2e-05, Sum P(4) = 2.2e-05
Identities = 14/41 (34%), Positives = 20/41 (48%)
Query: 455 SQNQVVHAKEEHEDLILESKRARFCQEI-CDGSSSRSPIDG 494
SQ+Q +EE +D +E AR ++ DG S P G
Sbjct: 540 SQSQADEEEEEDDDFGVEYLLARDEEQSEADGGSG-PPTPG 579
Score = 37 (18.1 bits), Expect = 0.00016, Sum P(4) = 0.00016
Identities = 9/35 (25%), Positives = 16/35 (45%)
Query: 300 SEETATKPKDEEGEFTTEIACSSSGLVLNAQGGPG 334
S+ A + ++E+ +F E + A GG G
Sbjct: 540 SQSQADEEEEEDDDFGVEYLLARDEEQSEADGGSG 574
>UNIPROTKB|E2R6G6 [details] [associations]
symbol:SRCAP "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR000330
Pfam:PF00176 GO:GO:0005524 GO:GO:0003677 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 PROSITE:PS51204 Ensembl:ENSCAFT00000026363
Uniprot:E2R6G6
Length = 1825
Score = 141 (54.7 bits), Expect = 4.9e-13, Sum P(4) = 4.9e-13
Identities = 35/104 (33%), Positives = 59/104 (56%)
Query: 907 WFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAV 966
W ++LDEAQ+IKN ++Q ++ ++RR L+GTP+QN++ +L+S FL F
Sbjct: 746 WRYLILDEAQNIKNFKSQRWQSLLNFNSQRRLLLTGTPLQNSLMELWSLMHFLMPHVFQS 805
Query: 967 YKSFCSMIKVPISKNPVKG---Y-----KKLQAVLKTIMLRRTK 1002
++ F P++ ++G Y K+L VL+ +LRR K
Sbjct: 806 HREFKEWFSNPLT-GMIEGSQEYNEGLVKRLHKVLRPFLLRRVK 848
Score = 115 (45.5 bits), Expect = 4.9e-13, Sum P(4) = 4.9e-13
Identities = 52/202 (25%), Positives = 85/202 (42%)
Query: 517 NKKELDGVKEDMEAEIKTRSMASHLLKLSPESIQSNSSDCKSHVDDEPDI-CILEDISQP 575
+++E++ D EAE T + + PE S S + ++E D E+ S
Sbjct: 470 DEEEVEANSSDCEAEGATEAEEAR-----PEDSSSQSESAEEQSEEEEDEHSEEEETSGS 524
Query: 576 ARSNQSLVLGKTLSMNRSACSNHSVA---LGKPVVTSQHSSYSDYPGYPGVPLTGLG--- 629
+ S +S S ++S G + ++ S+ G G P G
Sbjct: 525 SESEESESEESEESGSQSQADEEEEEDDDFGVEYLLARDEEQSEADGGSGPPTPGPTATL 584
Query: 630 GMKSKASDERLILQ-VAMQGISQPNAEASAPDGVLAVPLLR-HQRIALSWMVQKETSSLH 687
G K + +D + + +G + + P +L LR +Q I L W+V L+
Sbjct: 585 GPKKEITDIAAAAESLQPKGYTLATTQVKTPIPLLLRGQLREYQHIGLDWLVTMYEKKLN 644
Query: 688 CSGGILADDQGLGKTISTIALI 709
GILAD+ GLGKTI TI+L+
Sbjct: 645 ---GILADEMGLGKTIQTISLL 663
Score = 64 (27.6 bits), Expect = 4.9e-13, Sum P(4) = 4.9e-13
Identities = 18/61 (29%), Positives = 29/61 (47%)
Query: 781 LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCELA-----KFDVVITTYSI 835
L++ PTSV+ W EL+ S +L Y+G+ + + F V IT+Y +
Sbjct: 677 LIIVPTSVMLNWEMELKRWCPS---FKILTYYGAQKERKLKRQGWTKPNAFHVCITSYKL 733
Query: 836 V 836
V
Sbjct: 734 V 734
Score = 48 (22.0 bits), Expect = 4.9e-13, Sum P(4) = 4.9e-13
Identities = 18/62 (29%), Positives = 24/62 (38%)
Query: 363 YGNSLS---NITLGDGKRSAQPCTYSHSHSSRTKQMVFAKDEGNDDLFPCWSTVSDSVEP 419
Y + LS N L K + PC S S +S V D+ + D P D E
Sbjct: 243 YSDLLSQSLNQPLASSKAGSSPCLGSSSAASSPPPPVSRLDDEDGDFQPQEEEEEDDEET 302
Query: 420 ID 421
I+
Sbjct: 303 IE 304
Score = 39 (18.8 bits), Expect = 0.00016, Sum P(4) = 0.00016
Identities = 26/109 (23%), Positives = 45/109 (41%)
Query: 12 EVSAADEFADDQGLSIDMDTLL-GILEEEKQPDRVKSSPGDLSLRNLSQDELVQDVGSHS 70
E +A ++ A+D+ +I + L G ++ + + + G+LS+ L Q S
Sbjct: 401 EFTANEDEAEDEEETIAAEEQLEGEVDHAMELSEL-AREGELSMEELLQQYAGAYASDAS 459
Query: 71 NLQLQSGFKGDMRDIATYPLYGLEISGA---ESGGLGDSSSQLEPTEQK 116
S + D ++ E GA E DSSSQ E E++
Sbjct: 460 GPGSGSSEEEDEEEVEANSS-DCEAEGATEAEEARPEDSSSQSESAEEQ 507
Score = 37 (18.1 bits), Expect = 2.2e-05, Sum P(4) = 2.2e-05
Identities = 14/41 (34%), Positives = 20/41 (48%)
Query: 455 SQNQVVHAKEEHEDLILESKRARFCQEI-CDGSSSRSPIDG 494
SQ+Q +EE +D +E AR ++ DG S P G
Sbjct: 540 SQSQADEEEEEDDDFGVEYLLARDEEQSEADGGSG-PPTPG 579
Score = 37 (18.1 bits), Expect = 0.00016, Sum P(4) = 0.00016
Identities = 9/35 (25%), Positives = 16/35 (45%)
Query: 300 SEETATKPKDEEGEFTTEIACSSSGLVLNAQGGPG 334
S+ A + ++E+ +F E + A GG G
Sbjct: 540 SQSQADEEEEEDDDFGVEYLLARDEEQSEADGGSG 574
>UNIPROTKB|F1S736 [details] [associations]
symbol:SHPRH "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0008270 "zinc ion binding" evidence=IEA] [GO:0006334
"nucleosome assembly" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0000786 "nucleosome" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR001965 InterPro:IPR005818 Pfam:PF00176 Pfam:PF00538
Pfam:PF13639 PROSITE:PS50089 PROSITE:PS51194 PROSITE:PS51504
SMART:SM00184 SMART:SM00249 SMART:SM00490 SMART:SM00526
Prosite:PS00518 GO:GO:0005524 GO:GO:0005634 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 Gene3D:1.10.10.10 InterPro:IPR011991
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 GO:GO:0004386 InterPro:IPR019786 PROSITE:PS01359
InterPro:IPR017907 InterPro:IPR014001 SMART:SM00487 GO:GO:0006334
GO:GO:0000786 GeneTree:ENSGT00700000104571 OMA:FEGLVKQ
EMBL:CU234205 EMBL:CU019540 Ensembl:ENSSSCT00000004555
Uniprot:F1S736
Length = 1688
Score = 157 (60.3 bits), Expect = 5.8e-13, Sum P(3) = 5.8e-13
Identities = 32/97 (32%), Positives = 50/97 (51%)
Query: 898 VAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFR 957
+ PL V W+R+ LDEAQ ++ + A L RWC+SGTP+Q ++DL+
Sbjct: 809 IPSPLVAVEWWRICLDEAQMVECPAVKAAEMAQRLSGINRWCISGTPVQRGLEDLFGLVV 868
Query: 958 FLRYDPFAVYKSFCSMIKVPI-SKNPVKGYKKLQAVL 993
FL +P+ V + ++ P KNP Y + +L
Sbjct: 869 FLGIEPYCVKHWWVRLLYRPYCKKNPQPLYSFIAKIL 905
Score = 111 (44.1 bits), Expect = 5.8e-13, Sum P(3) = 5.8e-13
Identities = 25/63 (39%), Positives = 37/63 (58%)
Query: 780 TLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTK--DPCELAKFDVVITTYSIVS 837
TL++ P+S+ QW +E+ V S SL VLVY G + P LA+ D+VI TY ++
Sbjct: 723 TLIISPSSICHQWVDEINRHVRSS-SLRVLVYQGVKKDGFLQPHFLAEQDIVIITYDVLR 781
Query: 838 MEV 840
E+
Sbjct: 782 SEL 784
Score = 80 (33.2 bits), Expect = 8.0e-10, Sum P(3) = 8.0e-10
Identities = 36/135 (26%), Positives = 57/135 (42%)
Query: 690 GGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGI---QVNGLDL 746
GGILAD+ GLGKT+ +ALIL T D K+ TL + N Q +G ++
Sbjct: 373 GGILADEMGLGKTVEVLALILTH------TRQDVKQDALTLPEGKVVNYFIPSQYSGENV 426
Query: 747 VKQESDYCRVVPNG------SSAKSFNFVEQAKGRPAAGTLVVCP--TSVLRQWAEELRN 798
E+ + P + V++ G+ L + +S+ R + RN
Sbjct: 427 KNTETQHMEFEPKEKVQCPPTRVMILTAVKEMNGKKGVSILSIYKYVSSIYRYDVQ--RN 484
Query: 799 KVTSKGSLSVLVYHG 813
+ K L L++ G
Sbjct: 485 RSLLKRMLKCLIFEG 499
Score = 51 (23.0 bits), Expect = 5.8e-13, Sum P(3) = 5.8e-13
Identities = 10/18 (55%), Positives = 16/18 (88%)
Query: 666 PLLR-HQRIALSWMVQKE 682
P+LR +QR A++WM+Q+E
Sbjct: 307 PVLRPYQREAVNWMLQQE 324
Score = 37 (18.1 bits), Expect = 3.2e-05, Sum P(2) = 3.2e-05
Identities = 5/10 (50%), Positives = 10/10 (100%)
Query: 237 YVDVPYTDAE 246
YVD+P++++E
Sbjct: 786 YVDIPHSNSE 795
>TIGR_CMR|BA_5487 [details] [associations]
symbol:BA_5487 "helicase, putative" species:198094
"Bacillus anthracis str. Ames" [GO:0003677 "DNA binding"
evidence=ISS] [GO:0004386 "helicase activity" evidence=ISS]
[GO:0006268 "DNA unwinding involved in replication" evidence=ISS]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
GO:GO:0004386 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
HOGENOM:HOG000099451 InterPro:IPR022138 Pfam:PF12419
RefSeq:NP_847649.1 RefSeq:YP_022153.1 RefSeq:YP_031335.1
ProteinModelPortal:Q81K50 IntAct:Q81K50 DNASU:1085116
EnsemblBacteria:EBBACT00000010571 EnsemblBacteria:EBBACT00000018432
EnsemblBacteria:EBBACT00000022093 GeneID:1085116 GeneID:2819120
GeneID:2852260 KEGG:ban:BA_5487 KEGG:bar:GBAA_5487 KEGG:bat:BAS5096
OMA:ASTIYEF ProtClustDB:CLSK888016
BioCyc:BANT260799:GJAJ-5171-MONOMER
BioCyc:BANT261594:GJ7F-5349-MONOMER Uniprot:Q81K50
Length = 918
Score = 155 (59.6 bits), Expect = 7.4e-13, Sum P(3) = 7.4e-13
Identities = 35/102 (34%), Positives = 59/102 (57%)
Query: 902 LAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRY 961
L+ + W V+LDEAQ+IKN T+ ++A L+A + L+GTP++N + +L+S F F+ +
Sbjct: 566 LSTLCWDAVILDEAQNIKNPHTKQSKAVRNLQANHKIALTGTPMENRLAELWSIFDFINH 625
Query: 962 DPFAVYKSFCSMIKVPISKNPVKG-YKKLQAVLKTIMLRRTK 1002
F PI K+ +G +++Q + +LRRTK
Sbjct: 626 GYLGSLGQFQRRFVSPIEKDRDEGKIQQVQRFISPFLLRRTK 667
Score = 82 (33.9 bits), Expect = 7.4e-13, Sum P(3) = 7.4e-13
Identities = 21/62 (33%), Positives = 34/62 (54%)
Query: 781 LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCE---LAKFDVVITTYSIVS 837
L+V PTSVL W +E + L V +++GS+R K L DVV+T+Y++
Sbjct: 504 LIVAPTSVLGNWQKEFERFAPN---LRVQLHYGSNRAKGESFKDFLQSADVVLTSYALAQ 560
Query: 838 ME 839
++
Sbjct: 561 LD 562
Score = 72 (30.4 bits), Expect = 7.4e-13, Sum P(3) = 7.4e-13
Identities = 18/57 (31%), Positives = 29/57 (50%)
Query: 663 LAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRT 719
L L +Q+ + W++ G +LADD GLGK+I TI +L + + +T
Sbjct: 447 LHATLRPYQQHGIEWLLYLRKLGF---GALLADDMGLGKSIQTITYLLYIKENNLQT 500
>WB|WBGene00020235 [details] [associations]
symbol:T05A12.4 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0006974 "response to DNA damage
stimulus" evidence=IMP] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50089
PROSITE:PS51194 SMART:SM00184 GO:GO:0005524 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 GO:GO:0006974 Gene3D:3.30.40.10
InterPro:IPR013083 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
GeneTree:ENSGT00700000104571 KO:K15710 EMBL:FO081690
RefSeq:NP_001023359.1 UniGene:Cel.8101 ProteinModelPortal:H2L0J8
SMR:H2L0J8 PRIDE:H2L0J8 EnsemblMetazoa:T05A12.4a GeneID:177453
KEGG:cel:CELE_T05A12.4 CTD:177453 WormBase:T05A12.4a OMA:YLQPCEM
Uniprot:H2L0J8
Length = 1622
Score = 111 (44.1 bits), Expect = 1.8e-12, Sum P(3) = 1.8e-12
Identities = 23/74 (31%), Positives = 41/74 (55%)
Query: 902 LAKVGWFRVVLDEAQSIKNH-RTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLR 960
L V ++R+++DE+Q + + +Q+ R L A+ WC++GTP+ +I +Y F FL
Sbjct: 515 LMHVEFWRIIVDESQVLPHGVSSQLTRMLMKLHAENWWCVTGTPLVKSIAGIYPLFNFLN 574
Query: 961 YDPFAVYKSFCSMI 974
PF + F +
Sbjct: 575 LFPFGSPQFFSQYV 588
Score = 102 (41.0 bits), Expect = 1.8e-12, Sum P(3) = 1.8e-12
Identities = 22/73 (30%), Positives = 41/73 (56%)
Query: 771 QAKGRPAAGT-LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTK--DPCELAKFD 827
+++ R A GT L++ P S++ QW E+ + ++ V+ Y G + PCE+ +D
Sbjct: 420 ESENRRAVGTTLIILPESLIFQWFTEISKHCSD--NIKVMFYFGIRKHGYLQPCEMDSYD 477
Query: 828 VVITTYSIVSMEV 840
V++TTY + E+
Sbjct: 478 VILTTYDTLRNEM 490
Score = 102 (41.0 bits), Expect = 1.8e-12, Sum P(3) = 1.8e-12
Identities = 30/88 (34%), Positives = 42/88 (47%)
Query: 673 IALSWMVQKETSSLH----CSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLE 728
IAL+ M +E + GGILAD+ GLGKTI ++LI R S D ++E
Sbjct: 276 IALNEMTIEERKDIEKRFTLKGGILADEMGLGKTIQALSLIATNRKHSKVEIYDESGEVE 335
Query: 729 TLNLDEEDNGIQVNGLDLVKQESDYCRV 756
T+N DE + + ES Y +
Sbjct: 336 TVNRDESKSTNSSIAQQIKLAESSYAEM 363
Score = 46 (21.3 bits), Expect = 8.0e-07, Sum P(3) = 8.0e-07
Identities = 27/114 (23%), Positives = 47/114 (41%)
Query: 652 PNAEASAPDGVLAVPLLRHQRIALSWMVQKETSSLHCSGGI--------LADDQGLGKTI 703
PN + + D L L+++Q+ + WM+ +E + G I LA D L
Sbjct: 215 PNFKLNESD--LNCDLMQYQKDTVRWMLYRELNH-EPDGNIEWMIKSEKLASDTSLVYYP 271
Query: 704 STIALILKERPPSFRTEDDNKRQLET-LNLDEEDNGIQVNGLDLVKQESDYCRV 756
S A+ L E R + + + L+ + DE G + L L+ + +V
Sbjct: 272 SIGAIALNEMTIEERKDIEKRFTLKGGILADEMGLGKTIQALSLIATNRKHSKV 325
>TAIR|locus:2062999 [details] [associations]
symbol:BRM "AT2G46020" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS;IDA] [GO:0004386
"helicase activity" evidence=ISS] [GO:0005524 "ATP binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISM;IEA;IDA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0010199 "organ boundary specification between
lateral organs and the meristem" evidence=IGI] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=NAS;TAS] [GO:0040029
"regulation of gene expression, epigenetic" evidence=RCA;IMP]
[GO:0005829 "cytosol" evidence=IDA] [GO:0003682 "chromatin binding"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50014
PROSITE:PS51194 SMART:SM00297 SMART:SM00490 SMART:SM00951
GO:GO:0005829 GO:GO:0005524 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0006355 GO:GO:0003677 GO:GO:0006351 GO:GO:0004386
EMBL:AC005397 HSSP:Q97XQ5 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0016585 GO:GO:0043044
Gene3D:1.20.920.10 SUPFAM:SSF47370 PROSITE:PS00633 EMBL:AC004665
EMBL:AJ703891 IPI:IPI00529654 IPI:IPI00541940 PIR:G84897
RefSeq:NP_182126.2 RefSeq:NP_973695.1 UniGene:At.48598
ProteinModelPortal:Q6EVK6 SMR:Q6EVK6 IntAct:Q6EVK6 STRING:Q6EVK6
PaxDb:Q6EVK6 PRIDE:Q6EVK6 EnsemblPlants:AT2G46020.2 GeneID:819210
KEGG:ath:AT2G46020 TAIR:At2g46020 HOGENOM:HOG000029719
InParanoid:Q6EVK6 KO:K11647 OMA:EMNAPKE PhylomeDB:Q6EVK6
ProtClustDB:CLSN2681222 ArrayExpress:Q6EVK6 Genevestigator:Q6EVK6
GO:GO:0010199 GO:GO:0040029 Uniprot:Q6EVK6
Length = 2193
Score = 134 (52.2 bits), Expect = 2.0e-12, Sum P(5) = 2.0e-12
Identities = 34/102 (33%), Positives = 53/102 (51%)
Query: 902 LAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRY 961
L+KV W +++DEAQ +K+ + +AR R +RR L+GTP+QN + +L+S L
Sbjct: 1098 LSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLP 1157
Query: 962 DPFAVYKSFCSMIKVPISKN-PVKGYKK--LQAVLKTIMLRR 1000
D F K+F P K P + L+ K I++ R
Sbjct: 1158 DVFDNRKAFHDWFAQPFQKEGPAHNIEDDWLETEKKVIVIHR 1199
Score = 89 (36.4 bits), Expect = 2.0e-12, Sum P(5) = 2.0e-12
Identities = 21/51 (41%), Positives = 30/51 (58%)
Query: 659 PDGVLAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 709
P + A L +Q + L WM+ + L+ GILAD+ GLGKT+ +ALI
Sbjct: 973 PSMLQAGTLRDYQLVGLQWMLSLYNNKLN---GILADEMGLGKTVQVMALI 1020
Score = 73 (30.8 bits), Expect = 2.0e-12, Sum P(5) = 2.0e-12
Identities = 22/68 (32%), Positives = 36/68 (52%)
Query: 781 LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSS--RTK----DPCELAKFDVVITTYS 834
L++ P +VL W EL T S+S + Y G+ R+K + C + KF+V++TTY
Sbjct: 1034 LIIVPNAVLVNWKSELH---TWLPSVSCIYYVGTKDQRSKLFSQEVCAM-KFNVLVTTYE 1089
Query: 835 IVSMEVPK 842
+ + K
Sbjct: 1090 FIMYDRSK 1097
Score = 61 (26.5 bits), Expect = 2.0e-12, Sum P(5) = 2.0e-12
Identities = 27/100 (27%), Positives = 44/100 (44%)
Query: 516 LNKKELDGVKED---MEAEIKTRSMASHL-LKLSPESIQSNSSDCKSHVDDEPDICILED 571
L+KK D +K+ + ++ + + L L+L E + SD +S V +E D E
Sbjct: 697 LSKKRTDSLKKINGLLAKNLERKRIRPDLVLRLQIEEKKLRLSDLQSRVREEVDRQQQEI 756
Query: 572 ISQPARSNQSLVL---GKTLSMNRSACSNHSVALGKPVVT 608
+S P R + V + L MNR +N K + T
Sbjct: 757 MSMPDRPYRKFVRLCERQRLEMNRQVLANQKAVREKQLKT 796
Score = 53 (23.7 bits), Expect = 2.0e-12, Sum P(5) = 2.0e-12
Identities = 22/80 (27%), Positives = 33/80 (41%)
Query: 36 LEEEKQPDRVKSSPGDLSLR---NLSQDELVQDVGSHSNLQLQSGFKGDMRDIATYPLYG 92
LE K+ SS G + + N+ E+ G HS L G + D+AT
Sbjct: 533 LECGKESQAAASSNGPIFSKEEDNVGDTEVALTTG-HSQLFQNLGKEATSTDVATKEEQQ 591
Query: 93 LEISGAESGGLGDSSSQLEP 112
++ +S DSS+Q P
Sbjct: 592 TDVFPVKSDQGADSSTQKNP 611
Score = 41 (19.5 bits), Expect = 1.3e-09, Sum P(4) = 1.3e-09
Identities = 13/39 (33%), Positives = 19/39 (48%)
Query: 627 GLGGMKSKASDERLIL-QVAMQGI---SQPNAEASAPDG 661
G+ G S D+ + + MQ + SQP A +S P G
Sbjct: 155 GMVGSSSVGKDQDARMGMLNMQDLNPSSQPQASSSKPSG 193
Score = 39 (18.8 bits), Expect = 4.6e-11, Sum P(5) = 4.6e-11
Identities = 15/55 (27%), Positives = 22/55 (40%)
Query: 251 NVASTDSTICHGSEIISDDDYYSAMPCYINTGDTIFGDPSSFNFQHLLSSEETAT 305
NVAS +I S+ S + N+ I G S +H LS+ A+
Sbjct: 299 NVASQSPSIPISSQPASSSVVPGENSPHANSASDISGQSGSAKARHALSTGSFAS 353
Score = 38 (18.4 bits), Expect = 8.4e-06, Sum P(4) = 8.4e-06
Identities = 13/60 (21%), Positives = 26/60 (43%)
Query: 677 WMVQKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEED 736
++ +K T SL G+LA + + + L L+ R D R E ++ +++
Sbjct: 696 FLSKKRTDSLKKINGLLAKNLERKRIRPDLVLRLQIEEKKLRLSDLQSRVREEVDRQQQE 755
>UNIPROTKB|E1BC33 [details] [associations]
symbol:LOC788113 "Uncharacterized protein" species:9913
"Bos taurus" [GO:0043234 "protein complex" evidence=IEA]
[GO:0005794 "Golgi apparatus" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR017956 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00384 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0005794 GO:GO:0043234 GO:GO:0003677 InterPro:IPR020478
PRINTS:PR00929 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529
PROSITE:PS51204 GeneTree:ENSGT00530000063427 OMA:LGTGNPQ
EMBL:DAAA02057908 IPI:IPI00705506 Ensembl:ENSBTAT00000018503
Uniprot:E1BC33
Length = 3242
Score = 141 (54.7 bits), Expect = 3.2e-12, Sum P(3) = 3.2e-12
Identities = 35/104 (33%), Positives = 59/104 (56%)
Query: 907 WFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAV 966
W ++LDEAQ+IKN ++Q ++ ++RR L+GTP+QN++ +L+S FL F
Sbjct: 748 WRYLILDEAQNIKNFKSQRWQSLLNFNSQRRLLLTGTPLQNSLMELWSLMHFLMPHVFQS 807
Query: 967 YKSFCSMIKVPISKNPVKG---Y-----KKLQAVLKTIMLRRTK 1002
++ F P++ ++G Y K+L VL+ +LRR K
Sbjct: 808 HREFKEWFSNPLT-GMIEGSQEYNEGLVKRLHKVLRPFLLRRVK 850
Score = 116 (45.9 bits), Expect = 3.2e-12, Sum P(3) = 3.2e-12
Identities = 52/201 (25%), Positives = 88/201 (43%)
Query: 517 NKKELDGVKEDMEAEIKTRSMASHLLKLSPESIQSNSSDCKSHVDDEPDICILEDISQPA 576
++ E++ D E E T + + S QS+S++ +S +DE + E+ S+ +
Sbjct: 472 DEDEVEANSSDCEPEGATEAEEA---PQEDSSSQSDSAEEQSEDEDE-EHSEEEETSESS 527
Query: 577 RSNQSLVLGKTLSMNRSACSNHSVA---LGKPVVTSQHSSYSDYPGYPGVPLTGLG---G 630
S +S S ++S G + ++ S+ G G P G G
Sbjct: 528 ESEESESEESEESQSQSQADEEEEEDDDFGVEYLLARDEEQSEADGGSGPPTPGPTTTLG 587
Query: 631 MKSKASDERLILQ-VAMQGISQPNAEASAPDGVLAVPLLR-HQRIALSWMVQKETSSLHC 688
K + +D + + +G + + P +L LR +Q I L W+V L+
Sbjct: 588 PKKEITDIAAAAESLQPKGYTLATTQVKTPIPLLLRGQLREYQHIGLDWLVTMYEKKLN- 646
Query: 689 SGGILADDQGLGKTISTIALI 709
GILAD+ GLGKTI TI+L+
Sbjct: 647 --GILADEMGLGKTIQTISLL 665
Score = 64 (27.6 bits), Expect = 3.2e-12, Sum P(3) = 3.2e-12
Identities = 18/61 (29%), Positives = 29/61 (47%)
Query: 781 LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCELA-----KFDVVITTYSI 835
L++ PTSV+ W EL+ S +L Y+G+ + + F V IT+Y +
Sbjct: 679 LIIVPTSVMLNWEMELKRWCPS---FKILTYYGAQKERKLKRQGWTKPNAFHVCITSYKL 735
Query: 836 V 836
V
Sbjct: 736 V 736
Score = 43 (20.2 bits), Expect = 6.6e-05, Sum P(3) = 6.6e-05
Identities = 22/85 (25%), Positives = 38/85 (44%)
Query: 411 STVSDSVEPIDEAVGRNSSYHDGCNSFPFKDSGQSFIGLSPSLLSQNQVVHAKEEHEDLI 470
S+ SDS E +++ + + + + +S +S S SQ+Q +EE +D
Sbjct: 500 SSQSDSAE--EQSEDEDEEHSEEEETSESSESEESESEESEESQSQSQADEEEEEDDDFG 557
Query: 471 LESKRARFCQEI-CDGSSSRSPIDG 494
+E AR ++ DG S P G
Sbjct: 558 VEYLLARDEEQSEADGGSG-PPTPG 581
Score = 38 (18.4 bits), Expect = 0.00021, Sum P(3) = 0.00021
Identities = 18/92 (19%), Positives = 36/92 (39%)
Query: 243 TDAEVSSHNVASTDSTICHGSEIISDDDYYSAMPCYINTGDTIFGDPSSFNFQHLLSSEE 302
T+AE + +S+ S + +D+ +S T ++ + S S+
Sbjct: 489 TEAEEAPQEDSSSQSDSAE-EQSEDEDEEHSEEE---ETSESSESEESESEESEESQSQS 544
Query: 303 TATKPKDEEGEFTTEIACSSSGLVLNAQGGPG 334
A + ++E+ +F E + A GG G
Sbjct: 545 QADEEEEEDDDFGVEYLLARDEEQSEADGGSG 576
>ASPGD|ASPL0000031617 [details] [associations]
symbol:AN10707 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 PROSITE:PS50089 PROSITE:PS51194 SMART:SM00184
SMART:SM00490 Prosite:PS00518 GO:GO:0005524 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 EMBL:BN001305 Gene3D:3.30.40.10
InterPro:IPR013083 GO:GO:0004386 InterPro:IPR017907
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 OMA:HTWGVSG
EnsemblFungi:CADANIAT00003281 HOGENOM:HOG000181800 Uniprot:C8VFF9
Length = 1415
Score = 145 (56.1 bits), Expect = 3.7e-12, Sum P(3) = 3.7e-12
Identities = 34/104 (32%), Positives = 53/104 (50%)
Query: 901 PLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLR 960
PL K+ W+RV LDEAQ I++ + A+ + W ++GTP++ + DL FLR
Sbjct: 409 PLIKISWWRVCLDEAQMIESGISNAAKVARLIPRHIAWAVTGTPLRKDVTDLLGLLLFLR 468
Query: 961 YDPFA--VYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTK 1002
Y+PF ++K C P+ L ++ TI LR +K
Sbjct: 469 YEPFCGPIWKRLCDATFKPV----------LARIVNTITLRHSK 502
Score = 90 (36.7 bits), Expect = 3.7e-12, Sum P(3) = 3.7e-12
Identities = 24/72 (33%), Positives = 37/72 (51%)
Query: 775 RPAAGTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSR--TKDPCELAKF----DV 828
RP+ TL++ P +L QW +E+ L V Y G R T EL + DV
Sbjct: 318 RPSGATLIITPPVILGQWKQEIELHAPK---LQVFHYTGIQRHPTLSDQELVELMADNDV 374
Query: 829 VITTYSIVSMEV 840
V+TTY++++ E+
Sbjct: 375 VLTTYNVLAREI 386
Score = 74 (31.1 bits), Expect = 3.7e-12, Sum P(3) = 3.7e-12
Identities = 13/27 (48%), Positives = 19/27 (70%)
Query: 687 HCSGGILADDQGLGKTISTIALILKER 713
H GG+LA++ GLGKT+ I+L+ R
Sbjct: 274 HLKGGVLAEEMGLGKTVEMISLMCLNR 300
Score = 45 (20.9 bits), Expect = 3.1e-09, Sum P(3) = 3.1e-09
Identities = 12/41 (29%), Positives = 21/41 (51%)
Query: 655 EASAPD--GVLAVPLLRHQRIALSWMVQKETSSLHCSGGIL 693
E SAP + L QR A+ W++ +E L+ +G ++
Sbjct: 187 ELSAPVKCDLTECELFPFQRRAVRWLLNREGKELNSNGQVV 227
Score = 40 (19.1 bits), Expect = 1.0e-08, Sum P(3) = 1.0e-08
Identities = 10/38 (26%), Positives = 21/38 (55%)
Query: 20 ADDQGL--SIDMDTLLGILEEEKQPDRVKSSPGDLSLR 55
A++ GL +++M +L+ + +P+ + PG LR
Sbjct: 281 AEEMGLGKTVEMISLMCLNRRILRPEETFAEPGSNGLR 318
>RGD|1565642 [details] [associations]
symbol:Srcap "Snf2-related CREBBP activator protein"
species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005794 "Golgi apparatus" evidence=ISO]
[GO:0043234 "protein complex" evidence=ISO] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR017956 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00384 SMART:SM00490 RGD:1565642
GO:GO:0005524 GO:GO:0005634 GO:GO:0005794 GO:GO:0043234
GO:GO:0003677 InterPro:IPR020478 PRINTS:PR00929 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 PROSITE:PS51204 OrthoDB:EOG4B2SWB
IPI:IPI00778475 Ensembl:ENSRNOT00000054997 UCSC:RGD:1565642
ArrayExpress:D3ZWX7 Uniprot:D3ZWX7
Length = 3182
Score = 141 (54.7 bits), Expect = 1.9e-11, Sum P(4) = 1.9e-11
Identities = 35/104 (33%), Positives = 59/104 (56%)
Query: 907 WFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAV 966
W ++LDEAQ+IKN ++Q ++ ++RR L+GTP+QN++ +L+S FL F
Sbjct: 750 WRYLILDEAQNIKNFKSQRWQSLLNFNSQRRLLLTGTPLQNSLMELWSLMHFLMPHVFQS 809
Query: 967 YKSFCSMIKVPISKNPVKG---Y-----KKLQAVLKTIMLRRTK 1002
++ F P++ ++G Y K+L VL+ +LRR K
Sbjct: 810 HREFKEWFSNPLT-GMIEGSQEYNEGLVKRLHKVLRPFLLRRVK 852
Score = 118 (46.6 bits), Expect = 1.9e-11, Sum P(4) = 1.9e-11
Identities = 52/206 (25%), Positives = 89/206 (43%)
Query: 517 NKKELDGVKEDMEAEIKTRSMASHLLKLSPESIQSNSSDCKSHVDDEPDICILEDISQPA 576
+++E++ D E E +TR + + + E S S + H +DE D E++S +
Sbjct: 470 DEEEVEANSSDCELE-ETRDVE----EAAQEDSSSQSDSAEEHSEDEEDEHSEEEMSGSS 524
Query: 577 RSNQSLVLGKTLSMNRSACSNHSVA--------LGKPVVTSQHSSYSDYPGYPGVPLTGL 628
+S +S + ++S G + ++ S+ G G P G
Sbjct: 525 QSEESESDESEDAQSQSQADEEQEDEGDDDDDDFGVEYLLARDDERSEVDGGSGPPTPGP 584
Query: 629 G---GMKSKASDERLILQ-VAMQGISQPNAEASAPDGVLAVPLLR-HQRIALSWMVQKET 683
G K + +D + + +G + + P +L LR +Q I L W+V
Sbjct: 585 TTTLGPKKEITDIAAAAESLQPKGYTLATTQVKTPIPLLLRGQLREYQHIGLDWLVTMYE 644
Query: 684 SSLHCSGGILADDQGLGKTISTIALI 709
L+ GILAD+ GLGKTI TI+L+
Sbjct: 645 KKLN---GILADEMGLGKTIQTISLL 667
Score = 64 (27.6 bits), Expect = 1.9e-11, Sum P(4) = 1.9e-11
Identities = 18/61 (29%), Positives = 29/61 (47%)
Query: 781 LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCELA-----KFDVVITTYSI 835
L++ PTSV+ W EL+ S +L Y+G+ + + F V IT+Y +
Sbjct: 681 LIIVPTSVMLNWEMELKRWCPS---FKILTYYGAQKERKLKRQGWTKPNAFHVCITSYKL 737
Query: 836 V 836
V
Sbjct: 738 V 738
Score = 39 (18.8 bits), Expect = 1.9e-11, Sum P(4) = 1.9e-11
Identities = 20/64 (31%), Positives = 24/64 (37%)
Query: 363 YGNSLS---NITLGDGKRSAQPCTYSHSHSSRTKQMVFA-KDEGND-DLFPCWSTVSDSV 417
Y + LS N L K + PC S S +S V DE D D P D
Sbjct: 243 YSDLLSQSLNQPLASSKAGSSPCLGSSSAASSPPPPVSRLDDEAIDGDFQPQEEEEEDDE 302
Query: 418 EPID 421
E I+
Sbjct: 303 ETIE 306
>UNIPROTKB|F1RG74 [details] [associations]
symbol:SRCAP "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0043234 "protein complex" evidence=IEA] [GO:0005794
"Golgi apparatus" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR017956
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00384
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0005794
GO:GO:0043234 GO:GO:0003677 InterPro:IPR020478 PRINTS:PR00929
GO:GO:0004386 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529 PROSITE:PS51204
GeneTree:ENSGT00530000063427 OMA:LGTGNPQ EMBL:FP102572
Ensembl:ENSSSCT00000008537 Uniprot:F1RG74
Length = 3230
Score = 141 (54.7 bits), Expect = 2.5e-11, Sum P(4) = 2.5e-11
Identities = 35/104 (33%), Positives = 59/104 (56%)
Query: 907 WFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAV 966
W ++LDEAQ+IKN ++Q ++ ++RR L+GTP+QN++ +L+S FL F
Sbjct: 747 WRYLILDEAQNIKNFKSQRWQSLLNFNSQRRLLLTGTPLQNSLMELWSLMHFLMPHVFQS 806
Query: 967 YKSFCSMIKVPISKNPVKG---Y-----KKLQAVLKTIMLRRTK 1002
++ F P++ ++G Y K+L VL+ +LRR K
Sbjct: 807 HREFKEWFSNPLT-GMIEGSQEYNEGLVKRLHKVLRPFLLRRVK 849
Score = 117 (46.2 bits), Expect = 2.5e-11, Sum P(4) = 2.5e-11
Identities = 54/200 (27%), Positives = 90/200 (45%)
Query: 518 KKELDGVKEDM-EAEIKTRSMASHLLKLSPESIQSNSSDCKSHVDDEPDICILEDISQPA 576
++E D V+ D E+E + + A S QS+S++ +S D+E + E+ S+ +
Sbjct: 470 EEEEDEVEADSSESEPEGAAEAEEAPH-EDSSSQSDSAEEQSE-DEEDEHSEEEETSRSS 527
Query: 577 RSNQSLVLGKTLSMNRSACSNHSVA--LGKPVVTSQHSSYSDYPGYPGVPLTGLG---GM 631
S +S S ++S G + ++ S+ G G P G G
Sbjct: 528 ESEESESEESEESQSQSQADEEEEDDDFGVEYLLARDEERSEADGGSGPPTPGPTTTLGP 587
Query: 632 KSKASDERLILQ-VAMQGISQPNAEASAPDGVLAVPLLR-HQRIALSWMVQKETSSLHCS 689
K + +D + + +G + + P +L LR +Q I L W+V L+
Sbjct: 588 KKEITDIAAAAESLQPKGYTLATTQVKTPIPLLLRGQLREYQHIGLDWLVTMYEKKLN-- 645
Query: 690 GGILADDQGLGKTISTIALI 709
GILAD+ GLGKTI TI+L+
Sbjct: 646 -GILADEMGLGKTIQTISLL 664
Score = 64 (27.6 bits), Expect = 2.5e-11, Sum P(4) = 2.5e-11
Identities = 18/61 (29%), Positives = 29/61 (47%)
Query: 781 LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCELA-----KFDVVITTYSI 835
L++ PTSV+ W EL+ S +L Y+G+ + + F V IT+Y +
Sbjct: 678 LIIVPTSVMLNWEMELKRWCPS---FKILTYYGAQKERKLKRQGWTKPNAFHVCITSYKL 734
Query: 836 V 836
V
Sbjct: 735 V 735
Score = 39 (18.8 bits), Expect = 2.5e-11, Sum P(4) = 2.5e-11
Identities = 19/63 (30%), Positives = 23/63 (36%)
Query: 363 YGNSLS---NITLGDGKRSAQPCTYSHSHSSRTKQMVFAKD-EGNDDLFPCWSTVSDSVE 418
Y + LS N L K + PC S S +S V D E D F D E
Sbjct: 243 YSDLLSQSLNQPLASSKAGSSPCLGSSSAASSPPPPVSRMDDEAIDGDFQPQEEEEDDEE 302
Query: 419 PID 421
I+
Sbjct: 303 TIE 305
>UNIPROTKB|Q71Z25 [details] [associations]
symbol:LMOf2365_1665 "Helicase, Snf2 family" species:265669
"Listeria monocytogenes serotype 4b str. F2365" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR007527 Pfam:PF00176 Pfam:PF00271
PROSITE:PS50966 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003677 GO:GO:0008270 GO:GO:0004386 EMBL:AE017262
GenomeReviews:AE017262_GR eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 RefSeq:YP_014262.1
ProteinModelPortal:Q71Z25 STRING:Q71Z25 GeneID:2798638
KEGG:lmf:LMOf2365_1665 PATRIC:20324567 HOGENOM:HOG000026038
OMA:NTLNAEM ProtClustDB:CLSK629151 InterPro:IPR013663 Pfam:PF08455
Uniprot:Q71Z25
Length = 1072
Score = 128 (50.1 bits), Expect = 2.8e-11, Sum P(3) = 2.8e-11
Identities = 34/107 (31%), Positives = 60/107 (56%)
Query: 896 DIVAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSY 955
DIV A V + V++DE+Q+IKN+ T+ ++A L+ + LSGTP++N+ID+L++
Sbjct: 726 DIVH--FADVAFSSVIIDESQAIKNYHTKASQAVRALKRNHVFALSGTPLENSIDELWAI 783
Query: 956 FRFLRYDPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTK 1002
F+ L F + F ++P Y + +++ +LRR K
Sbjct: 784 FQTLMPGFFPSLRKFK---EIP--------YDNIAKMIRPFLLRRLK 819
Score = 111 (44.1 bits), Expect = 2.8e-11, Sum P(3) = 2.8e-11
Identities = 67/263 (25%), Positives = 107/263 (40%)
Query: 462 AKEEHEDLILES--KRARFCQEICDGSSSRSPIDGRHLSLNLNGSRQY-FPYAQ-PSTLN 517
++EE+E +++ K AR I S+ G + +N Y F Y P
Sbjct: 409 SEEENEKIMIRDVEKEARVMNII---ESAPVHFSGTKMVVNKQEKDLYQFYYRTIPKLAE 465
Query: 518 KKEL---DGVKEDMEAEIKTRSMASHLLKLSPES-IQSNSSDCKSHVDDEPDICILEDIS 573
E+ DG++E +E + R + + L +S ++ S S D K ++E +LE +
Sbjct: 466 YAEIYMEDGLEEMVEENV--RPVTT--LDVSGDNDYLSVSFDFKGIPEEEVQN-VLESLR 520
Query: 574 QPARSNQSLVLGKTLSMNRSACSNHSVALGKPVVTSQH-SSYSDYPGYPGVPL---TGLG 629
+ RS L G+ LS+ L V + + P Y G+ + G G
Sbjct: 521 EK-RSYHRLKSGRFLSLESENYKQMEDVLQMLEVRKKDVQANMQVPLYRGMQIYDILGAG 579
Query: 630 GMKSKASDERLILQVAMQGISQPNAEASAPDGVLAVPLLRHQRIALSWMVQKETSSLHCS 689
R ++ +Q + P G+ A L +Q WM +L
Sbjct: 580 AQDEHHKFSRSFRELLTDITTQSEDSFALPKGLKA-ELRDYQLTGFEWMKSLAKYNL--- 635
Query: 690 GGILADDQGLGKTISTIALILKE 712
GGILADD GLGKT+ TI+ + E
Sbjct: 636 GGILADDMGLGKTVQTISFLASE 658
Score = 58 (25.5 bits), Expect = 2.8e-11, Sum P(3) = 2.8e-11
Identities = 19/85 (22%), Positives = 39/85 (45%)
Query: 760 GSSAKSFNFV-EQAKGRP-AAGTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGS--S 815
G + ++ +F+ + + P L++ P S+L W EL + + V V HG+ S
Sbjct: 646 GKTVQTISFLASELEDNPNLKPVLIITPASLLYNWQSELEKFAPA---IPVTVLHGTKQS 702
Query: 816 RTKDPCELAKFDVVITTYSIVSMEV 840
R + E+ V + +Y + ++
Sbjct: 703 RIAEMEEMKHGHVYLISYPSLRQDI 727
>ZFIN|ZDB-GENE-070228-1 [details] [associations]
symbol:ercc6 "excision repair cross-complementing
rodent repair deficiency, complementation group 6" species:7955
"Danio rerio" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 ZFIN:ZDB-GENE-070228-1 GO:GO:0005524
GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GeneTree:ENSGT00590000083118 CTD:2074 KO:K10841
EMBL:CR762493 IPI:IPI00933448 RefSeq:XP_688972.2
Ensembl:ENSDART00000112380 GeneID:560477 KEGG:dre:560477
NextBio:20883461 Bgee:F1RDN1 Uniprot:F1RDN1
Length = 1390
Score = 125 (49.1 bits), Expect = 2.8e-11, Sum P(4) = 2.8e-11
Identities = 35/115 (30%), Positives = 53/115 (46%)
Query: 902 LAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRY 961
+ + W V+LDE I+N V AC R R+ LSG+P+QN + +L+S F F+
Sbjct: 612 IQRYDWHYVILDEGHKIRNPNAGVTTACKQFRTPHRFILSGSPMQNNLKELWSLFDFVFP 671
Query: 962 DPFAVYKSFCSMIKVPISK------NPVK---GYK---KLQAVLKTIMLRRTKGE 1004
F VPI+ +PV+ YK L+ + +LRR K +
Sbjct: 672 GKLGTLPVFMEQFSVPITMGGYANASPVQVQTAYKCACVLRDTINPYLLRRMKAD 726
Score = 96 (38.9 bits), Expect = 2.8e-11, Sum P(4) = 2.8e-11
Identities = 25/67 (37%), Positives = 34/67 (50%)
Query: 661 GVLAVPLLRHQRIALSWMVQKETSSLHC--SGGILADDQGLGKTISTIALILKERPPSFR 718
G L L ++Q+ + WM + LHC +GGIL D+ GLGKTI IA + +
Sbjct: 478 GFLWKKLFKYQQTGVRWMWE-----LHCQQAGGILGDEMGLGKTIQIIAFLAGLSYSKLK 532
Query: 719 TEDDNKR 725
T N R
Sbjct: 533 TRGSNYR 539
Score = 70 (29.7 bits), Expect = 2.8e-11, Sum P(4) = 2.8e-11
Identities = 21/63 (33%), Positives = 32/63 (50%)
Query: 780 TLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYH--GSSRTKD----PCELAKFDVVITTY 833
T++VCP +V+ QW +E T V V H GS +K P +A ++IT+Y
Sbjct: 546 TVIVCPATVMHQWVKEFH---TWWPPFRVAVLHDTGSFTSKKEKLIPEIVASHGILITSY 602
Query: 834 SIV 836
S +
Sbjct: 603 SYI 605
Score = 55 (24.4 bits), Expect = 2.8e-11, Sum P(4) = 2.8e-11
Identities = 30/129 (23%), Positives = 57/129 (44%)
Query: 458 QVVHAKEEHEDLILESKRARFCQEICDG-SSSRSPIDGRHLSLNLNGSRQYFPYAQPSTL 516
QV A +E +++ + + + D S S + +H++ L Q P+A S
Sbjct: 100 QVDRAIQEANQAAAKAEAQKEYESVLDDVRSCTSAL--KHINKILE---QLTPHAASSKD 154
Query: 517 NKKELDGVK---EDMEAEIKT-RSMASHLLKL-SPESIQSNSSDCKSHVDDEPDICILED 571
++++ VK E+ E ++K R+ L L E IQ ++ D+EP L
Sbjct: 155 ISRKIESVKRQKENKEKQLKKIRAKQKRLQALLDGEDIQKLEAELLIEDDEEPGPSTLGS 214
Query: 572 ISQPARSNQ 580
+ PA+ ++
Sbjct: 215 MLMPAQESE 223
>TAIR|locus:2024198 [details] [associations]
symbol:SWI2 "switch 2" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA;ISS] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM] [GO:0016020 "membrane"
evidence=IDA] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 EMBL:CP002684
GO:GO:0005524 GO:GO:0016020 GO:GO:0003677 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 OMA:HGNRKDN
IPI:IPI00529418 RefSeq:NP_171871.2 UniGene:At.42525
UniGene:At.42526 ProteinModelPortal:F4I2H2 SMR:F4I2H2 PRIDE:F4I2H2
EnsemblPlants:AT1G03750.1 GeneID:839417 KEGG:ath:AT1G03750
Uniprot:F4I2H2
Length = 862
Score = 124 (48.7 bits), Expect = 3.4e-11, Sum P(3) = 3.4e-11
Identities = 35/120 (29%), Positives = 60/120 (50%)
Query: 898 VAGP-LAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYF 956
+ GP L+ + W V+ DEA +KN ++++ AC ++ K+R L+GT +QN I +L++ F
Sbjct: 258 IQGPVLSGINWEIVIADEAHRLKNEKSKLYEACLEIKTKKRIGLTGTVMQNKISELFNLF 317
Query: 957 RFLRYDPFAVYKSFCSMIKVPISKN-----PV-------KGYKKLQAVLKTIMLRRTKGE 1004
++ + F P+ P K + L ++L+ MLRRTK E
Sbjct: 318 EWVAPGSLGTREHFRDFYDEPLKLGQRATAPERFVQIADKRKQHLGSLLRKYMLRRTKEE 377
Score = 91 (37.1 bits), Expect = 3.4e-11, Sum P(3) = 3.4e-11
Identities = 22/43 (51%), Positives = 27/43 (62%)
Query: 667 LLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 709
LL HQR + +M ++ H GGIL DD GLGKTI TIA +
Sbjct: 139 LLEHQREGVKFMYNLYKNN-H--GGILGDDMGLGKTIQTIAFL 178
Score = 78 (32.5 bits), Expect = 3.4e-11, Sum P(3) = 3.4e-11
Identities = 22/85 (25%), Positives = 42/85 (49%)
Query: 759 NGSSAKSFNFVEQAKGRPAAGTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTK 818
+G + +S +E KG P L++CP+S++ W E + V VYHGS+R
Sbjct: 185 DGDAGESC-LLESDKG-PV---LIICPSSIIHNWESEFSRWASF---FKVSVYHGSNRDM 236
Query: 819 --DPCELAKFDVVITTYSIVSMEVP 841
+ + +V++T++ ++ P
Sbjct: 237 ILEKLKARGVEVLVTSFDTFRIQGP 261
>DICTYBASE|DDB_G0292948 [details] [associations]
symbol:isw "CHR group protein" species:44689
"Dictyostelium discoideum" [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=IEA] [GO:0031491 "nucleosome binding"
evidence=IEA] [GO:0016818 "hydrolase activity, acting on acid
anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0006338 "chromatin remodeling" evidence=IEA;ISS] [GO:0005634
"nucleus" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0016887 "ATPase activity" evidence=ISS] [GO:0016587 "Isw1
complex" evidence=ISS] [GO:0006200 "ATP catabolic process"
evidence=ISS] [GO:0044351 "macropinocytosis" evidence=RCA]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 dictyBase:DDB_G0292948 GO:GO:0005524
GenomeReviews:CM000155_GR GO:GO:0003677 EMBL:AAFI02000197
GO:GO:0016887 Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0006338
InterPro:IPR017884 PROSITE:PS51293 GO:GO:0004386 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0031491
GO:GO:0043044 GO:GO:0016587 KO:K11654 SUPFAM:SSF101224
RefSeq:XP_629432.1 ProteinModelPortal:Q54CI4 STRING:Q54CI4
PRIDE:Q54CI4 EnsemblProtists:DDB0231763 GeneID:8628951
KEGG:ddi:DDB_G0292948 InParanoid:Q54CI4 OMA:IREANAF
ProtClustDB:CLSZ2728711 Uniprot:Q54CI4
Length = 1221
Score = 129 (50.5 bits), Expect = 4.9e-11, Sum P(4) = 4.9e-11
Identities = 31/102 (30%), Positives = 53/102 (51%)
Query: 904 KVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDP 963
K W +++DEA IKN + +++ ++ R ++GTP+QN + +L+S FL D
Sbjct: 395 KFSWRYIIIDEAHRIKNENSVLSKGVRMFNSQFRLLITGTPLQNNLHELWSLLNFLLPDV 454
Query: 964 FAVYKSFCSMIKVPIS-KNPVKGYKKLQAVLKTIMLRRTKGE 1004
F+ F + + +N + KL VL+ +LRR K E
Sbjct: 455 FSSSDDFDKWFDLANNTENQQEVIDKLHKVLRPFLLRRIKTE 496
Score = 95 (38.5 bits), Expect = 4.9e-11, Sum P(4) = 4.9e-11
Identities = 28/87 (32%), Positives = 47/87 (54%)
Query: 626 TGLGGMKSKASDERLILQVAMQGISQP---NAEASAPDGVLAVPLLRHQRIALSWMVQKE 682
T G + +A DE I+ M+ +P N S+P + + + +Q L+W++Q
Sbjct: 234 TKRGHITEEAEDEA-IMNETMEE-EEPHSFNFFTSSPPYIKSGTMRDYQVYGLNWLIQLY 291
Query: 683 TSSLHCSGGILADDQGLGKTISTIALI 709
++ GILAD+ GLGKT+ TI+L+
Sbjct: 292 ERGIN---GILADEMGLGKTLQTISLL 315
Score = 77 (32.2 bits), Expect = 4.9e-11, Sum P(4) = 4.9e-11
Identities = 21/64 (32%), Positives = 30/64 (46%)
Query: 781 LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCE-----LAKFDVVITTYSI 835
L++ P S L WA+E L V+ +HGS ++ + KFDV ITTY +
Sbjct: 329 LIIAPKSTLSGWAKEFTRWCPF---LRVVRFHGSKEEREDIKKNQLIFKKFDVCITTYEV 385
Query: 836 VSME 839
E
Sbjct: 386 AIRE 389
Score = 40 (19.1 bits), Expect = 4.9e-11, Sum P(4) = 4.9e-11
Identities = 30/126 (23%), Positives = 55/126 (43%)
Query: 17 DEFADDQGLSIDMDTLLGILE----EEKQPDRVKSSPGDLS-LRNL--SQDELVQDVGSH 69
D+ DD+ L+ D GI EE + +R++S + L+ + Q + +Q++ +
Sbjct: 100 DQVDDDEDLN-DPTIQNGINRKDETEEARNERLESIRLEKERLKQIREQQRKQLQELEKN 158
Query: 70 SNLQLQSGFKGDMRDIATYPLYGLEISGAESGGLGDSSSQLEPTEQKCSPLQTCSASFSD 129
QLQ + Y L EI ++++ + T+ K L + SAS S+
Sbjct: 159 QRQQLQEDKEKSANARLKYLLERTEIF-THFVSNSNNNNNTKKTKTKSPVLSSSSASSSN 217
Query: 130 WFNQNS 135
N N+
Sbjct: 218 NNNNNN 223
Score = 39 (18.8 bits), Expect = 6.9e-06, Sum P(3) = 6.9e-06
Identities = 14/63 (22%), Positives = 29/63 (46%)
Query: 683 TSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGIQVN 742
T++ S + + + TIS+ + P S +++N+ E + +E D+ + N
Sbjct: 32 TTTTSSSSSSVGNKRNESPTISSSG---NQSPKSMENDNENEED-EVMEEEEVDDN-EEN 86
Query: 743 GLD 745
G D
Sbjct: 87 GND 89
>WB|WBGene00007027 [details] [associations]
symbol:ssl-1 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0000003 "reproduction" evidence=IMP] [GO:0040011 "locomotion"
evidence=IMP] [GO:0040010 "positive regulation of growth rate"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0040035
"hermaphrodite genitalia development" evidence=IMP]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0009792 GO:GO:0040007 GO:GO:0040010 GO:GO:0002119
GO:GO:0003677 GO:GO:0040011 GO:GO:0016568 GO:GO:0040035
GO:GO:0004386 HSSP:Q97XQ5 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 PROSITE:PS51204 GeneTree:ENSGT00530000063427 KO:K11320
EMBL:AL132904 EMBL:AY551965 RefSeq:NP_001255179.1
RefSeq:NP_001255180.1 RefSeq:NP_001255181.1 RefSeq:NP_001255182.1
UniGene:Cel.203 ProteinModelPortal:Q9NEL2 SMR:Q9NEL2
MINT:MINT-3384018 PaxDb:Q9NEL2 EnsemblMetazoa:Y111B2A.22a
GeneID:190954 KEGG:cel:CELE_Y111B2A.22 UCSC:Y111B2A.22 CTD:190954
WormBase:Y111B2A.22a WormBase:Y111B2A.22b WormBase:Y111B2A.22c
WormBase:Y111B2A.22d InParanoid:Q9NEL2 OMA:HLACSES NextBio:947488
ArrayExpress:Q9NEL2 Uniprot:Q9NEL2
Length = 2395
Score = 144 (55.7 bits), Expect = 5.8e-11, Sum P(4) = 5.8e-11
Identities = 38/107 (35%), Positives = 60/107 (56%)
Query: 907 WFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAV 966
W ++LDEAQ+IKN ++Q +A +RA+RR L+GTP+QN++ +L+S FL F+
Sbjct: 680 WQYLILDEAQNIKNWKSQRWQALLNVRARRRLLLTGTPLQNSLMELWSLMHFLMPTIFSS 739
Query: 967 YKSFCSMIKVPIS---------KNPVKGYKKLQAVLKTIMLRRTKGE 1004
+ F P++ P+ G +L VL+ +LRR K E
Sbjct: 740 HDDFKDWFSNPLTGMMEGNMEFNAPLIG--RLHKVLRPFILRRLKKE 784
Score = 97 (39.2 bits), Expect = 5.8e-11, Sum P(4) = 5.8e-11
Identities = 32/89 (35%), Positives = 45/89 (50%)
Query: 631 MKSKASDERL--ILQVAMQGIS-QPNAEASAPDGVLA-VPLL------RHQRIALSWMVQ 680
+ S+ SDER + +A + + QP V VP L +Q + L WMV
Sbjct: 512 LNSQDSDERQQELANIAEEALKFQPKGYTLETTQVKTPVPFLIRGQLREYQMVGLDWMVT 571
Query: 681 KETSSLHCSGGILADDQGLGKTISTIALI 709
+L+ GILAD+ GLGKTI TI+L+
Sbjct: 572 LYEKNLN---GILADEMGLGKTIQTISLL 597
Score = 67 (28.6 bits), Expect = 5.8e-11, Sum P(4) = 5.8e-11
Identities = 21/67 (31%), Positives = 33/67 (49%)
Query: 781 LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCELAK-------FDVVITTY 833
L+V PTSV+ W E + + L +L Y G++ K+ E K F V IT+Y
Sbjct: 611 LIVVPTSVILNWEMEFKKWCPA---LKILTYFGTA--KERAEKRKGWMKPNCFHVCITSY 665
Query: 834 SIVSMEV 840
V+ ++
Sbjct: 666 KTVTQDI 672
Score = 44 (20.5 bits), Expect = 5.8e-11, Sum P(4) = 5.8e-11
Identities = 13/37 (35%), Positives = 16/37 (43%)
Query: 93 LEISGAESGGLGDSSSQLEPTEQKCSPLQTCSASFSD 129
LE A GD+ ++E E S Q S S SD
Sbjct: 446 LEEQKARKEACGDNEEKMEIDESPSSDAQKPSTSSSD 482
Score = 42 (19.8 bits), Expect = 1.4e-05, Sum P(4) = 1.4e-05
Identities = 10/28 (35%), Positives = 15/28 (53%)
Query: 719 TEDDNKRQLETLNLDEEDNGIQVNGLDL 746
++D ++RQ E N+ EE Q G L
Sbjct: 514 SQDSDERQQELANIAEEALKFQPKGYTL 541
Score = 41 (19.5 bits), Expect = 1.1e-10, Sum P(4) = 1.1e-10
Identities = 16/66 (24%), Positives = 28/66 (42%)
Query: 510 YAQPSTLNKKELDGVKEDMEAEIKTRSMASHLLKLSPESIQSNSSDCKSHVDDEPDICIL 569
Y + L +++L+ +K + E K R A + E +S SSD + D+
Sbjct: 427 YLKAYGLTQEDLEEMKREKLEEQKARKEACGDNEEKMEIDESPSSDAQKPSTSSSDLTA- 485
Query: 570 EDISQP 575
E + P
Sbjct: 486 EQLQDP 491
>POMBASE|SPAC144.05 [details] [associations]
symbol:SPAC144.05 "ATP-dependent DNA helicase
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0000790
"nuclear chromatin" evidence=NAS] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0004842 "ubiquitin-protein ligase activity" evidence=ISM]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0006281 "DNA repair" evidence=ISS] [GO:0008094
"DNA-dependent ATPase activity" evidence=ISM] [GO:0008270 "zinc ion
binding" evidence=ISM] [GO:0016567 "protein ubiquitination"
evidence=ISM] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50089
PROSITE:PS51194 SMART:SM00184 PomBase:SPAC144.05 Prosite:PS00518
GO:GO:0005524 EMBL:CU329670 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 GO:GO:0006281 GO:GO:0000790 Gene3D:3.30.40.10
InterPro:IPR013083 GO:GO:0004386 GO:GO:0004842 InterPro:IPR017907
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008094 KO:K15710 OMA:HTWGVSG OrthoDB:EOG4Q2HPM PIR:T37672
RefSeq:NP_594666.1 ProteinModelPortal:Q9UTL9
EnsemblFungi:SPAC144.05.1 GeneID:2542902 KEGG:spo:SPAC144.05
NextBio:20803941 Uniprot:Q9UTL9
Length = 1375
Score = 144 (55.7 bits), Expect = 7.0e-11, Sum P(3) = 7.0e-11
Identities = 25/68 (36%), Positives = 42/68 (61%)
Query: 901 PLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLR 960
PL V W+R+ +DEAQ ++ ++ VA+ + + W +SGTP+++ +DDL+ LR
Sbjct: 415 PLIDVCWWRICVDEAQMVETSQSNVAQMIYRIPRVNCWTVSGTPVRSEVDDLFGLLFLLR 474
Query: 961 YDPFAVYK 968
Y P +YK
Sbjct: 475 YSPMYLYK 482
Score = 76 (31.8 bits), Expect = 7.0e-11, Sum P(3) = 7.0e-11
Identities = 14/31 (45%), Positives = 21/31 (67%)
Query: 690 GGILADDQGLGKTISTIALILKERPPSFRTE 720
GGILAD+ G+GKT+ + L+L + P T+
Sbjct: 285 GGILADEMGMGKTLEVLGLVLHHQLPISLTD 315
Score = 76 (31.8 bits), Expect = 7.0e-11, Sum P(3) = 7.0e-11
Identities = 22/65 (33%), Positives = 35/65 (53%)
Query: 780 TLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCELAKF----DVVITTYSI 835
TL++ P+++L QW E+ V S L V Y G R + + AK D+V+T+YS
Sbjct: 333 TLIITPSTILDQWLSEIDLHVPS---LKVFHYQGI-RKSNGLKSAKIFLDCDIVVTSYSD 388
Query: 836 VSMEV 840
+ E+
Sbjct: 389 LRFEL 393
>UNIPROTKB|Q47YP1 [details] [associations]
symbol:CPS_3404 "Snf2 family protein" species:167879
"Colwellia psychrerythraea 34H" [GO:0003674 "molecular_function"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003677
EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
RefSeq:YP_270079.1 ProteinModelPortal:Q47YP1 STRING:Q47YP1
GeneID:3519815 KEGG:cps:CPS_3404 PATRIC:21469757
HOGENOM:HOG000294304 BioCyc:CPSY167879:GI48-3433-MONOMER
Uniprot:Q47YP1
Length = 1134
Score = 146 (56.5 bits), Expect = 9.9e-11, Sum P(2) = 9.9e-11
Identities = 33/97 (34%), Positives = 57/97 (58%)
Query: 907 WFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAV 966
++ +VLDEA IKN +T++ +A L+A+ + CL+GTP++N + + ++ F FL
Sbjct: 786 FYYLVLDEAHYIKNTKTKLYQAFLTLKAQHKLCLTGTPMENHLGEFWAQFNFLLPGFLGG 845
Query: 967 YKSFCSMIKVPISKNPVKGYKKL-QAVLKTIMLRRTK 1002
+ F + + PI K+ K+L +K +LRRTK
Sbjct: 846 QRQFTKLFRTPIEKHGELERKQLLNQRIKPFILRRTK 882
Score = 98 (39.6 bits), Expect = 9.9e-11, Sum P(2) = 9.9e-11
Identities = 31/99 (31%), Positives = 49/99 (49%)
Query: 615 SDYPGYPGVPLTGLGGMKSKASDERLILQVAMQGISQPNAEASAPDGVLAVPLLRHQRIA 674
S + G+ + + GM +K + + L ++ Q P+G+ A L +Q
Sbjct: 612 SRFQGHQTLSMLDDQGMIAKGTSKLRALADKLKDFQQVTT-IPVPEGLNAT-LRTYQHQG 669
Query: 675 LSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKER 713
L+W+ L+ GILADD GLGKTI T+A +L E+
Sbjct: 670 LNWLQFLREYQLN---GILADDMGLGKTIQTLAHLLIEK 705
Score = 95 (38.5 bits), Expect = 2.0e-10, Sum P(2) = 2.0e-10
Identities = 52/201 (25%), Positives = 93/201 (46%)
Query: 652 PNAEASAPDGVLAVPLLR-HQRIAL---SWMVQKETSSLHCSGGILADDQGLGKTISTIA 707
PNA + DG + + + HQ +++ M+ K TS L L D Q ++TI
Sbjct: 600 PNALSH--DGTIELSRFQGHQTLSMLDDQGMIAKGTSKLRALADKLKDFQ----QVTTIP 653
Query: 708 LILKERPPSFRT-EDDNKRQLETLNLDEEDNGIQVNGLDLVKQESDYCRVVPNGSSAKSF 766
+ + + RT + L+ L + + NGI + + L K ++
Sbjct: 654 -VPEGLNATLRTYQHQGLNWLQFLR-EYQLNGILADDMGLGKTIQTLAHLL--------- 702
Query: 767 NFVEQAKGRPAAGTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKD-PC---- 821
+E+ +GR L+V PTSV+ WA E+ +K T + LS V HG+ R + C
Sbjct: 703 --IEKQQGRLTKPILIVAPTSVIFNWANEI-DKFTPQ--LSYQVLHGNKRHEQFGCLEGV 757
Query: 822 ELAK--FDVVITTYSIVSMEV 840
E + D++IT+Y++++ ++
Sbjct: 758 ENGENQVDIIITSYALITKDL 778
Score = 44 (20.5 bits), Expect = 3.5e-05, Sum P(2) = 3.5e-05
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 20 ADDQGLSIDMDTLLGILEEEKQ 41
ADD GL + TL +L E++Q
Sbjct: 686 ADDMGLGKTIQTLAHLLIEKQQ 707
>TIGR_CMR|CPS_3404 [details] [associations]
symbol:CPS_3404 "Snf2 family protein" species:167879
"Colwellia psychrerythraea 34H" [GO:0003674 "molecular_function"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003677
EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
RefSeq:YP_270079.1 ProteinModelPortal:Q47YP1 STRING:Q47YP1
GeneID:3519815 KEGG:cps:CPS_3404 PATRIC:21469757
HOGENOM:HOG000294304 BioCyc:CPSY167879:GI48-3433-MONOMER
Uniprot:Q47YP1
Length = 1134
Score = 146 (56.5 bits), Expect = 9.9e-11, Sum P(2) = 9.9e-11
Identities = 33/97 (34%), Positives = 57/97 (58%)
Query: 907 WFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAV 966
++ +VLDEA IKN +T++ +A L+A+ + CL+GTP++N + + ++ F FL
Sbjct: 786 FYYLVLDEAHYIKNTKTKLYQAFLTLKAQHKLCLTGTPMENHLGEFWAQFNFLLPGFLGG 845
Query: 967 YKSFCSMIKVPISKNPVKGYKKL-QAVLKTIMLRRTK 1002
+ F + + PI K+ K+L +K +LRRTK
Sbjct: 846 QRQFTKLFRTPIEKHGELERKQLLNQRIKPFILRRTK 882
Score = 98 (39.6 bits), Expect = 9.9e-11, Sum P(2) = 9.9e-11
Identities = 31/99 (31%), Positives = 49/99 (49%)
Query: 615 SDYPGYPGVPLTGLGGMKSKASDERLILQVAMQGISQPNAEASAPDGVLAVPLLRHQRIA 674
S + G+ + + GM +K + + L ++ Q P+G+ A L +Q
Sbjct: 612 SRFQGHQTLSMLDDQGMIAKGTSKLRALADKLKDFQQVTT-IPVPEGLNAT-LRTYQHQG 669
Query: 675 LSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKER 713
L+W+ L+ GILADD GLGKTI T+A +L E+
Sbjct: 670 LNWLQFLREYQLN---GILADDMGLGKTIQTLAHLLIEK 705
Score = 95 (38.5 bits), Expect = 2.0e-10, Sum P(2) = 2.0e-10
Identities = 52/201 (25%), Positives = 93/201 (46%)
Query: 652 PNAEASAPDGVLAVPLLR-HQRIAL---SWMVQKETSSLHCSGGILADDQGLGKTISTIA 707
PNA + DG + + + HQ +++ M+ K TS L L D Q ++TI
Sbjct: 600 PNALSH--DGTIELSRFQGHQTLSMLDDQGMIAKGTSKLRALADKLKDFQ----QVTTIP 653
Query: 708 LILKERPPSFRT-EDDNKRQLETLNLDEEDNGIQVNGLDLVKQESDYCRVVPNGSSAKSF 766
+ + + RT + L+ L + + NGI + + L K ++
Sbjct: 654 -VPEGLNATLRTYQHQGLNWLQFLR-EYQLNGILADDMGLGKTIQTLAHLL--------- 702
Query: 767 NFVEQAKGRPAAGTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKD-PC---- 821
+E+ +GR L+V PTSV+ WA E+ +K T + LS V HG+ R + C
Sbjct: 703 --IEKQQGRLTKPILIVAPTSVIFNWANEI-DKFTPQ--LSYQVLHGNKRHEQFGCLEGV 757
Query: 822 ELAK--FDVVITTYSIVSMEV 840
E + D++IT+Y++++ ++
Sbjct: 758 ENGENQVDIIITSYALITKDL 778
Score = 44 (20.5 bits), Expect = 3.5e-05, Sum P(2) = 3.5e-05
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 20 ADDQGLSIDMDTLLGILEEEKQ 41
ADD GL + TL +L E++Q
Sbjct: 686 ADDMGLGKTIQTLAHLLIEKQQ 707
>TAIR|locus:2150270 [details] [associations]
symbol:CHR23 "chromatin remodeling 23" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA;ISS]
[GO:0004386 "helicase activity" evidence=IEA;ISS] [GO:0005524 "ATP
binding" evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM]
[GO:0006259 "DNA metabolic process" evidence=RCA] [GO:0007062
"sister chromatid cohesion" evidence=RCA] [GO:0007126 "meiosis"
evidence=RCA] [GO:0009640 "photomorphogenesis" evidence=RCA]
[GO:0010388 "cullin deneddylation" evidence=RCA] [GO:0016567
"protein ubiquitination" evidence=RCA] [GO:0016571 "histone
methylation" evidence=RCA] [GO:0016579 "protein deubiquitination"
evidence=RCA] [GO:0031048 "chromatin silencing by small RNA"
evidence=RCA] [GO:0033044 "regulation of chromosome organization"
evidence=RCA] [GO:0045132 "meiotic chromosome segregation"
evidence=RCA] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=RCA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 EMBL:CP002688 GO:GO:0003677 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 KO:K11647
OMA:WAPSISA IPI:IPI00536400 RefSeq:NP_197432.2 UniGene:At.43995
ProteinModelPortal:F4K128 SMR:F4K128 PRIDE:F4K128
EnsemblPlants:AT5G19310.1 GeneID:832051 KEGG:ath:AT5G19310
PhylomeDB:F4K128 Uniprot:F4K128
Length = 1064
Score = 134 (52.2 bits), Expect = 1.0e-10, Sum P(3) = 1.0e-10
Identities = 35/113 (30%), Positives = 55/113 (48%)
Query: 902 LAKVGWFRVVLDEAQSIKNHRTQVARACW-GLRAKRRWCLSGTPIQNAIDDLYSYFRFLR 960
L K+ W +++DE +KNH +A+ G R KRR L+GTPIQN++ +L+S FL
Sbjct: 502 LKKIDWNYMIVDEGHRLKNHECALAKTLGTGYRIKRRLLLTGTPIQNSLQELWSLLNFLL 561
Query: 961 YDPFAVYKSFCSMIKVPISK---------NPVKGYKKLQAVLKTIMLRRTKGE 1004
F +F P ++ + +L V++ +LRR K E
Sbjct: 562 PHIFNSIHNFEEWFNTPFAECGSASLTDEEELLIINRLHHVIRPFLLRRKKSE 614
Score = 88 (36.0 bits), Expect = 1.0e-10, Sum P(3) = 1.0e-10
Identities = 22/43 (51%), Positives = 26/43 (60%)
Query: 667 LLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 709
L +Q L WMV + + GILAD+ GLGKTI TIALI
Sbjct: 386 LRSYQLEGLQWMVSLYNNDYN---GILADEMGLGKTIQTIALI 425
Score = 69 (29.3 bits), Expect = 1.0e-10, Sum P(3) = 1.0e-10
Identities = 20/60 (33%), Positives = 31/60 (51%)
Query: 781 LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSS--RTKDPCELA--KFDVVITTYSIV 836
L++ P +VL W E S+S +Y GS RT+ +A KF+V+IT Y ++
Sbjct: 439 LILAPKAVLPNWENEF---ALWAPSISAFLYDGSKEKRTEIRARIAGGKFNVLITHYDLI 495
>SGD|S000004237 [details] [associations]
symbol:IRC20 "Putative helicase" species:4932 "Saccharomyces
cerevisiae" [GO:0045003 "double-strand break repair via
synthesis-dependent strand annealing" evidence=IGI;IMP] [GO:0004386
"helicase activity" evidence=IEA;ISS] [GO:0005634 "nucleus"
evidence=IEA;IDA] [GO:0005739 "mitochondrion" evidence=IDA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0046872 "metal
ion binding" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0006950 "response to stress" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR001841
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 PROSITE:PS50089
PROSITE:PS51194 SMART:SM00184 SMART:SM00490 SGD:S000004237
Prosite:PS00518 GO:GO:0005739 GO:GO:0005524 GO:GO:0005634
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 EMBL:BK006945
Gene3D:3.30.40.10 InterPro:IPR013083 GO:GO:0004386 HSSP:Q9LRB7
EMBL:U20865 InterPro:IPR017907 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0045003 PIR:S59393
RefSeq:NP_013348.1 ProteinModelPortal:Q06554 SMR:Q06554
DIP:DIP-6373N IntAct:Q06554 MINT:MINT-700566 STRING:Q06554
PaxDb:Q06554 EnsemblFungi:YLR247C GeneID:850949 KEGG:sce:YLR247C
CYGD:YLR247c GeneTree:ENSGT00700000104571 KO:K15710 OMA:HTWGVSG
OrthoDB:EOG4Q2HPM NextBio:967413 Genevestigator:Q06554
GermOnline:YLR247C Uniprot:Q06554
Length = 1556
Score = 113 (44.8 bits), Expect = 2.1e-10, Sum P(3) = 2.1e-10
Identities = 32/110 (29%), Positives = 54/110 (49%)
Query: 899 AGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRF 958
+ PLA + ++R++LDE Q +++ T A+ L W +SGTPIQN I + +
Sbjct: 520 SSPLALMQFYRIILDEVQMLRSSSTYSAKCTSLLHRIHTWGVSGTPIQN-IYNFRMIMSY 578
Query: 959 LRYDPFAVYKSFCSMIKVPIS-KNPVKGYKKLQAVLKTIMLRRTKGEDCL 1007
L+ PF F ++ I +N K Y V + +R + +DC+
Sbjct: 579 LKLHPFCDEVDFIRTLQEEIKLRNEAKDYTSNDFVCQLKGVRFSI-KDCM 627
Score = 105 (42.0 bits), Expect = 2.1e-10, Sum P(3) = 2.1e-10
Identities = 21/69 (30%), Positives = 38/69 (55%)
Query: 780 TLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPC--------ELAKFDVVIT 831
TL++CP ++L+QW EE+ SL Y G + C +L ++D+++T
Sbjct: 433 TLIICPNAILKQWLEEIE---LHANSLKWYTYRGYNEIMKDCKTVDEAVQQLCQYDIIVT 489
Query: 832 TYSIVSMEV 840
+Y+I++ EV
Sbjct: 490 SYNIIATEV 498
Score = 76 (31.8 bits), Expect = 2.1e-10, Sum P(3) = 2.1e-10
Identities = 14/26 (53%), Positives = 20/26 (76%)
Query: 688 CSGGILADDQGLGKTISTIALILKER 713
C+ G+LA++ GLGKTI ++LIL R
Sbjct: 384 CAKGVLAEEMGLGKTIEILSLILLNR 409
Score = 53 (23.7 bits), Expect = 4.4e-08, Sum P(3) = 4.4e-08
Identities = 22/63 (34%), Positives = 34/63 (53%)
Query: 641 ILQVAMQGISQ--PNAEASAPDGVLAVPLLRHQRIALSWMVQKET--SSLHCSGGILADD 696
IL+ + +S+ P S PD L V LL QR ++ WM+ KE +SL + ++ D+
Sbjct: 265 ILEYSKDRLSKIKPFLPQSIPD--LKVNLLPFQRESVEWMLIKEGHGNSLSDTPTVI-DE 321
Query: 697 QGL 699
GL
Sbjct: 322 VGL 324
>TAIR|locus:2173644 [details] [associations]
symbol:CHR1 "chromatin remodeling 1" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA;ISS] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0006349
"regulation of gene expression by genetic imprinting" evidence=IMP]
[GO:0044030 "regulation of DNA methylation" evidence=IMP]
[GO:0051574 "positive regulation of histone H3-K9 methylation"
evidence=IMP] [GO:0000786 "nucleosome" evidence=IDA] [GO:0004003
"ATP-dependent DNA helicase activity" evidence=IMP] [GO:0016887
"ATPase activity" evidence=IDA] [GO:0090241 "negative regulation of
histone H4 acetylation" evidence=IMP] [GO:0005515 "protein binding"
evidence=IPI] [GO:0006344 "maintenance of chromatin silencing"
evidence=IMP] [GO:0009294 "DNA mediated transformation"
evidence=IMP] [GO:0032197 "transposition, RNA-mediated"
evidence=IMP] [GO:0006342 "chromatin silencing" evidence=RCA]
[GO:0006346 "methylation-dependent chromatin silencing"
evidence=IMP;RCA] [GO:0008283 "cell proliferation" evidence=RCA]
[GO:0016246 "RNA interference" evidence=RCA] [GO:0016572 "histone
phosphorylation" evidence=RCA] [GO:0031048 "chromatin silencing by
small RNA" evidence=RCA] [GO:0051567 "histone H3-K9 methylation"
evidence=RCA] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0003677
GO:GO:0006351 GO:GO:0004003 GO:GO:0006349 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0009294
EMBL:AB018119 GO:GO:0000786 GO:GO:0051574 GO:GO:0044030
GO:GO:0090241 GO:GO:0032197 EMBL:AF143940 EMBL:AY099638
EMBL:BT002161 EMBL:AY699010 EMBL:AY699011 IPI:IPI00524705
RefSeq:NP_201476.1 UniGene:At.28851 ProteinModelPortal:Q9XFH4
SMR:Q9XFH4 STRING:Q9XFH4 PaxDb:Q9XFH4 PRIDE:Q9XFH4
EnsemblPlants:AT5G66750.1 GeneID:836808 KEGG:ath:AT5G66750
TAIR:At5g66750 HOGENOM:HOG000172362 InParanoid:Q9XFH4 OMA:ETFYTAI
PhylomeDB:Q9XFH4 ProtClustDB:CLSN2686877 Genevestigator:Q9XFH4
GO:GO:0006344 GO:GO:0006346 Uniprot:Q9XFH4
Length = 764
Score = 119 (46.9 bits), Expect = 2.4e-10, Sum P(3) = 2.4e-10
Identities = 32/107 (29%), Positives = 50/107 (46%)
Query: 907 WFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAV 966
W VV+DE +KNH+ ++ R L+ + L+GTP+QN + +L+S F+ D F
Sbjct: 327 WKYVVIDEGHRLKNHKCKLLRELKHLKMDNKLLLTGTPLQNNLSELWSLLNFILPDIFTS 386
Query: 967 YKSFCSMI-----------KVPISKNPVKGYKKLQAVLKTIMLRRTK 1002
+ F S K K + KL +L+ +LRR K
Sbjct: 387 HDEFESWFDFSEKNKNEATKEEEEKRRAQVVSKLHGILRPFILRRMK 433
Score = 92 (37.4 bits), Expect = 2.4e-10, Sum P(3) = 2.4e-10
Identities = 29/95 (30%), Positives = 46/95 (48%)
Query: 760 GSSAKSFNFVEQAKGRPAAGT-LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTK 818
G + ++ F+ KG G LV+ P S L W E+ + T S++ ++YHG +
Sbjct: 232 GKTIQTIGFLSHLKGNGLDGPYLVIAPLSTLSNWFNEIA-RFTP--SINAIIYHGDKNQR 288
Query: 819 D-------PCELA-KFDVVITTYSIVSMEVPKQPL 845
D P + KF +VIT+Y V+M K+ L
Sbjct: 289 DELRRKHMPKTVGPKFPIVITSYE-VAMNDAKRIL 322
Score = 72 (30.4 bits), Expect = 2.4e-10, Sum P(3) = 2.4e-10
Identities = 17/43 (39%), Positives = 24/43 (55%)
Query: 667 LLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 709
L +Q + W++ + L+ GILAD GLGKTI TI +
Sbjct: 202 LKSYQLKGVKWLISLWQNGLN---GILADQMGLGKTIQTIGFL 241
>UNIPROTKB|I3LTT5 [details] [associations]
symbol:SMARCA1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF13892
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003677
GO:GO:0004386 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00680000100002 EMBL:CU695129
Ensembl:ENSSSCT00000027860 Uniprot:I3LTT5
Length = 778
Score = 136 (52.9 bits), Expect = 2.7e-10, Sum P(4) = 2.7e-10
Identities = 33/99 (33%), Positives = 51/99 (51%)
Query: 904 KVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDP 963
K W +V+DEA IKN +++++ ++ R L+GTP+QN + +L++ FL D
Sbjct: 305 KFHWRYLVIDEAHRIKNEKSKLSEIVREFKSTNRLLLTGTPLQNNLHELWALLNFLLPDV 364
Query: 964 FAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTK 1002
F F S K ++L AVLK +LRR K
Sbjct: 365 FNSADDFDSWFDTKNCLGDQKLVERLHAVLKPFLLRRIK 403
Score = 91 (37.1 bits), Expect = 2.7e-10, Sum P(4) = 2.7e-10
Identities = 21/52 (40%), Positives = 32/52 (61%)
Query: 658 APDGVLAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 709
+P V PL +Q L+W++ + ++ GILAD+ GLGKT+ TIAL+
Sbjct: 177 SPSYVKGGPLRDYQIRGLNWLISLYENGVN---GILADEMGLGKTLQTIALL 225
Score = 59 (25.8 bits), Expect = 2.7e-10, Sum P(4) = 2.7e-10
Identities = 19/64 (29%), Positives = 31/64 (48%)
Query: 781 LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGS--SRT---KDPCELAKFDVVITTYSI 835
+V+ P S L W E + V S L V+ + G +R +D ++DV +T+Y +
Sbjct: 239 MVLVPKSTLHNWMNEFKRWVPS---LRVICFVGDKDARAAFIRDEMMPGEWDVCVTSYEM 295
Query: 836 VSME 839
V E
Sbjct: 296 VIKE 299
Score = 38 (18.4 bits), Expect = 2.7e-10, Sum P(4) = 2.7e-10
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 452 SLLSQNQVVHAK---EEHEDLILESKR 475
SL+S H + EE E+L+ ES++
Sbjct: 140 SLISAGDYRHRRTEQEEDEELLSESRK 166
>UNIPROTKB|Q6ZRS2 [details] [associations]
symbol:SRCAP "Helicase SRCAP" species:9606 "Homo sapiens"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0019048 "virus-host interaction" evidence=IEA] [GO:0043234
"protein complex" evidence=IDA] [GO:0003713 "transcription
coactivator activity" evidence=TAS] [GO:0004402 "histone
acetyltransferase activity" evidence=TAS] [GO:0006357 "regulation
of transcription from RNA polymerase II promoter" evidence=TAS]
[GO:0016573 "histone acetylation" evidence=TAS] [GO:0005634
"nucleus" evidence=IDA] [GO:0005794 "Golgi apparatus" evidence=IDA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR017956
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00384
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0005794
GO:GO:0019048 GO:GO:0043234 GO:GO:0003677 InterPro:IPR020478
PRINTS:PR00929 GO:GO:0006357 GO:GO:0006351 GO:GO:0003713
GO:GO:0004386 HSSP:Q97XQ5 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:AC106886 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 PROSITE:PS51204 GO:GO:0004402
EMBL:AC093249 EMBL:AK128030 EMBL:AB002307 EMBL:BC159099
EMBL:AF143946 IPI:IPI00009101 IPI:IPI00444046 IPI:IPI00550342
RefSeq:NP_006653.2 UniGene:Hs.647334 ProteinModelPortal:Q6ZRS2
SMR:Q6ZRS2 IntAct:Q6ZRS2 MINT:MINT-123408 STRING:Q6ZRS2
PhosphoSite:Q6ZRS2 DMDM:296452947 PaxDb:Q6ZRS2 PRIDE:Q6ZRS2
DNASU:10847 Ensembl:ENST00000262518 Ensembl:ENST00000344771
Ensembl:ENST00000380361 Ensembl:ENST00000395059 GeneID:10847
KEGG:hsa:10847 UCSC:uc002dze.1 UCSC:uc002dzg.1 CTD:10847
GeneCards:GC16P030710 H-InvDB:HIX0012970 HGNC:HGNC:16974
HPA:HPA028929 MIM:136140 MIM:611421 neXtProt:NX_Q6ZRS2
Orphanet:2044 PharmGKB:PA162404706 HOGENOM:HOG000168717
InParanoid:Q6ZRS2 KO:K11661 OMA:LGTGNPQ OrthoDB:EOG4B2SWB
ChiTaRS:SRCAP GenomeRNAi:10847 NextBio:41182 ArrayExpress:Q6ZRS2
Bgee:Q6ZRS2 CleanEx:HS_SRCAP Genevestigator:Q6ZRS2 Uniprot:Q6ZRS2
Length = 3230
Score = 141 (54.7 bits), Expect = 3.1e-10, Sum P(4) = 3.1e-10
Identities = 35/104 (33%), Positives = 59/104 (56%)
Query: 907 WFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAV 966
W ++LDEAQ+IKN ++Q ++ ++RR L+GTP+QN++ +L+S FL F
Sbjct: 740 WRYLILDEAQNIKNFKSQRWQSLLNFNSQRRLLLTGTPLQNSLMELWSLMHFLMPHVFQS 799
Query: 967 YKSFCSMIKVPISKNPVKG---Y-----KKLQAVLKTIMLRRTK 1002
++ F P++ ++G Y K+L VL+ +LRR K
Sbjct: 800 HREFKEWFSNPLT-GMIEGSQEYNEGLVKRLHKVLRPFLLRRVK 842
Score = 103 (41.3 bits), Expect = 3.1e-10, Sum P(4) = 3.1e-10
Identities = 45/168 (26%), Positives = 74/168 (44%)
Query: 548 SIQSNSSDCKSHVDDEPDICILEDISQPARSNQSLVLGKTLSMNRSACSNHSVA--LGKP 605
S QS+S + +S D+E + E+ S + S +S + ++S G
Sbjct: 494 SSQSDSVEDRSE-DEEDEHSEEEETSGSSASEESESEESEDAQSQSQADEEEEDDDFGVE 552
Query: 606 VVTSQHSSYSDYPGYPGVPLTGLG--GMKSKASDERLILQ-VAMQGISQPNAEASAPDGV 662
+ ++ S+ G P G G K + +D + + +G + + P +
Sbjct: 553 YLLARDEEQSEADAGSGPPTPGPTTLGPKKEITDIAAAAESLQPKGYTLATTQVKTPIPL 612
Query: 663 LAVPLLR-HQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 709
L LR +Q I L W+V L+ GILAD+ GLGKTI TI+L+
Sbjct: 613 LLRGQLREYQHIGLDWLVTMYEKKLN---GILADEMGLGKTIQTISLL 657
Score = 64 (27.6 bits), Expect = 3.1e-10, Sum P(4) = 3.1e-10
Identities = 18/61 (29%), Positives = 29/61 (47%)
Query: 781 LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCELA-----KFDVVITTYSI 835
L++ PTSV+ W EL+ S +L Y+G+ + + F V IT+Y +
Sbjct: 671 LIIVPTSVMLNWEMELKRWCPS---FKILTYYGAQKERKLKRQGWTKPNAFHVCITSYKL 727
Query: 836 V 836
V
Sbjct: 728 V 728
Score = 42 (19.8 bits), Expect = 3.1e-10, Sum P(4) = 3.1e-10
Identities = 17/62 (27%), Positives = 23/62 (37%)
Query: 363 YGNSLS---NITLGDGKRSAQPCTYSHSHSSRTKQMVFAKDEGNDDLFPCWSTVSDSVEP 419
Y + LS N L K + PC S S +S D+ + D P D E
Sbjct: 243 YSDLLSQSLNQPLTSSKAGSSPCLGSSSAASSPPPPASRLDDEDGDFQPQEDEEEDDEET 302
Query: 420 ID 421
I+
Sbjct: 303 IE 304
Score = 40 (19.1 bits), Expect = 0.00013, Sum P(3) = 0.00013
Identities = 9/37 (24%), Positives = 21/37 (56%)
Query: 720 EDDNKRQLETLNLDEEDNG----IQVNGLDLVKQESD 752
ED+ + ET+ ++E+ G Q ++L+++E +
Sbjct: 293 EDEEEDDEETIEVEEQQEGNDAEAQRREIELLRREGE 329
Score = 38 (18.4 bits), Expect = 0.00062, Sum P(4) = 0.00062
Identities = 10/32 (31%), Positives = 16/32 (50%)
Query: 547 ESIQSNSSDCKSHVDDEPDICILEDISQPARS 578
+ + +NSSDC+ E + ED S + S
Sbjct: 468 DEVDANSSDCEPEGPVEAEEPPQEDSSSQSDS 499
>FB|FBgn0020306 [details] [associations]
symbol:dom "domino" species:7227 "Drosophila melanogaster"
[GO:0004386 "helicase activity" evidence=IEA;NAS] [GO:0008283 "cell
proliferation" evidence=NAS] [GO:0016458 "gene silencing"
evidence=IGI] [GO:0008094 "DNA-dependent ATPase activity"
evidence=ISS] [GO:0002165 "instar larval or pupal development"
evidence=IMP] [GO:0006325 "chromatin organization" evidence=IMP]
[GO:0048477 "oogenesis" evidence=IMP] [GO:0005634 "nucleus"
evidence=IC;IDA] [GO:0035207 "negative regulation of hemocyte
proliferation" evidence=TAS] [GO:0030097 "hemopoiesis"
evidence=TAS] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0000381 "regulation of alternative
mRNA splicing, via spliceosome" evidence=IMP] [GO:0000123 "histone
acetyltransferase complex" evidence=IPI] [GO:0045747 "positive
regulation of Notch signaling pathway" evidence=IGI] [GO:0035222
"wing disc pattern formation" evidence=IGI] [GO:0010629 "negative
regulation of gene expression" evidence=IMP] [GO:0005515 "protein
binding" evidence=IPI] [GO:0070983 "dendrite guidance"
evidence=IMP] [GO:0022008 "neurogenesis" evidence=IMP] [GO:2000637
"positive regulation of gene silencing by miRNA" evidence=IMP]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 EMBL:AE013599 GO:GO:0005524
GO:GO:0006355 GO:GO:0003677 GO:GO:0035222 GO:GO:0048477
GO:GO:0016573 GO:GO:0045747 GO:GO:0006351 GO:GO:0007049
GO:GO:0035267 GO:GO:0004386 GO:GO:0030097 GO:GO:0043486
GO:GO:2000637 HSSP:Q97XQ5 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0016458 InterPro:IPR017877
PROSITE:PS50090 GO:GO:0070983 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
GO:GO:0008094 GO:GO:0000381 EMBL:AF076776 EMBL:AF254373
EMBL:AY058653 RefSeq:NP_524833.2 RefSeq:NP_788424.1 UniGene:Dm.7802
ProteinModelPortal:Q9NDJ2 SMR:Q9NDJ2 IntAct:Q9NDJ2 STRING:Q9NDJ2
PaxDb:Q9NDJ2 EnsemblMetazoa:FBtr0071603 GeneID:45655
KEGG:dme:Dmel_CG9696 UCSC:CG9696-RA CTD:45655 FlyBase:FBgn0020306
GeneTree:ENSGT00530000063427 InParanoid:Q9NDJ2 KO:K11320
OMA:TENDASA OrthoDB:EOG4C5B08 PhylomeDB:Q9NDJ2 GenomeRNAi:45655
NextBio:838265 Bgee:Q9NDJ2 GO:GO:0002165 GO:GO:0035207
Uniprot:Q9NDJ2
Length = 3198
Score = 128 (50.1 bits), Expect = 4.4e-10, Sum P(3) = 4.4e-10
Identities = 34/106 (32%), Positives = 57/106 (53%)
Query: 907 WFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAV 966
W ++LDEAQ+IKN ++Q + +RR L+GTP+QN + +L+S FL F+
Sbjct: 1036 WKYLILDEAQNIKNFKSQRWQLLLNFSTERRLLLTGTPLQNDLMELWSLMHFLMPYVFSS 1095
Query: 967 YKSFCSMIKVPISKNPVKG---YK-----KLQAVLKTIMLRRTKGE 1004
++ F P++ ++G Y +L V++ +LRR K E
Sbjct: 1096 HREFKEWFSNPMT-GMIEGNMEYNETLITRLHKVIRPFLLRRLKKE 1140
Score = 110 (43.8 bits), Expect = 4.4e-10, Sum P(3) = 4.4e-10
Identities = 74/330 (22%), Positives = 130/330 (39%)
Query: 389 SSRTKQMVFAKDEGNDDLFPCWSTVSDSVEPIDEAVGRNSSYHDGCNSFPFKDSGQSFIG 448
S + ++ K E +DD P S D E I +A + + + K+S F
Sbjct: 643 SLNSSRLTSPKRESDDDFRP-ESGSEDDEETIAKAEEDAADVKEEVTALA-KESEMDF-- 698
Query: 449 LSPSLLSQNQVVHAKEEHEDLILESKRARFCQEICDGSSSRSPIDGRHLSLNLNGSRQYF 508
L N + E+ D +++ +++ + S S + + S + +
Sbjct: 699 --DDFL--NDLPPGYLENRDKLMKEEQSSAIKTETPDDSDDSEFEAKEASDDDENTISKQ 754
Query: 509 PYAQPSTLNKKELDGVKEDMEAEIKTRSMASHLLKLSPESIQSNSSDCKSHVDDEPDICI 568
A+ +KKE+D ++ D + ++ + +A + + P + + +D + D
Sbjct: 755 EEAEQEIDHKKEIDELEADNDLSVE-QLLAKYKSEQPPSPKRRKLAPRDPELDSDDDSTA 813
Query: 569 LEDI--SQPARSNQSLVLGKTLSMNRSACSNHSVALGKPVVTSQHSSYSDYPGYPGVPLT 626
++ S+ A + L T+ + G + + + S G
Sbjct: 814 VDSTEESEDAATEDEEDLS-TVKTDTDMEEQDEQEDGLKSLMADADATSGAAGSGST--A 870
Query: 627 GLGGMKSKASDERLILQVAMQGISQPNAEA-SAPDGVLAVP-LLRH-----QRIALSWMV 679
G G K D+ L A+ QP S+ + V VP LL+H Q I L W+V
Sbjct: 871 GASGNK----DDMLNDAAALAESLQPKGNTLSSTNVVTPVPFLLKHSLREYQHIGLDWLV 926
Query: 680 QKETSSLHCSGGILADDQGLGKTISTIALI 709
L+ GILAD+ GLGKTI TIAL+
Sbjct: 927 TMNERKLN---GILADEMGLGKTIQTIALL 953
Score = 62 (26.9 bits), Expect = 4.4e-10, Sum P(3) = 4.4e-10
Identities = 19/61 (31%), Positives = 30/61 (49%)
Query: 781 LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCELA-----KFDVVITTYSI 835
L+V P+SV+ W E+ K G +L Y+GS + + + F V IT+Y +
Sbjct: 967 LIVVPSSVMLNW--EMEFKKWCPG-FKILTYYGSQKERKLKRVGWTKPNAFHVCITSYKL 1023
Query: 836 V 836
V
Sbjct: 1024 V 1024
>FB|FBgn0035689 [details] [associations]
symbol:CG7376 species:7227 "Drosophila melanogaster"
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0022008
"neurogenesis" evidence=IMP] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR013026
InterPro:IPR019734 Pfam:PF00176 PROSITE:PS50005 PROSITE:PS50089
PROSITE:PS50293 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
Prosite:PS00518 GO:GO:0005524 GO:GO:0022008 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 GO:GO:0004386 InterPro:IPR017907
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 EMBL:BT001896
ProteinModelPortal:Q8IG89 PaxDb:Q8IG89 PRIDE:Q8IG89
FlyBase:FBgn0035689 InParanoid:Q8IG89 OrthoDB:EOG470RZ4
ArrayExpress:Q8IG89 Bgee:Q8IG89 Uniprot:Q8IG89
Length = 1285
Score = 113 (44.8 bits), Expect = 4.6e-10, Sum P(3) = 4.6e-10
Identities = 24/66 (36%), Positives = 40/66 (60%)
Query: 777 AAGTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRT--KDPCELAKFDVVITTYS 834
+ T++V P ++ QW EE+ ++ SL VL+Y G T P +LA++DVV+T Y+
Sbjct: 349 SGATIIVSPNAIKMQWFEEIHKHISP--SLKVLLYFGLHSTFWVSPFDLAQYDVVLTDYT 406
Query: 835 IVSMEV 840
I+ E+
Sbjct: 407 ILRNEI 412
Score = 88 (36.0 bits), Expect = 4.6e-10, Sum P(3) = 4.6e-10
Identities = 22/59 (37%), Positives = 31/59 (52%)
Query: 901 PLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFL 959
PL V W+RV LDEAQ +++ + A L A RW ++GT ID+L F+
Sbjct: 436 PLLMVNWWRVCLDEAQMVESSTSAAAEMVRMLPAINRWAVTGT-----IDELPPLLEFV 489
Score = 87 (35.7 bits), Expect = 4.6e-10, Sum P(3) = 4.6e-10
Identities = 26/98 (26%), Positives = 47/98 (47%)
Query: 658 APDGVLAVPLLRHQRIALSWMVQKETSSLHCS-GGILADDQGLGKTISTIALILKERPPS 716
A DG+ V +H+ + ++E + GGILAD+ GLGKT+ +A++L P
Sbjct: 205 AIDGITRV--FKHKYCLQFYPFEEEIPKISLPPGGILADEMGLGKTVEFLAMLLMNPRPQ 262
Query: 717 FRTEDDNKRQLETLNLDEEDNGIQVNGLDLVKQESDYC 754
+D Q L+E + + + + K++ +C
Sbjct: 263 DSYRNDYWHQ----RLEEFSDEVPLKRSRISKKDEVFC 296
Score = 38 (18.4 bits), Expect = 4.6e-05, Sum P(3) = 4.6e-05
Identities = 7/19 (36%), Positives = 11/19 (57%)
Query: 912 LDEAQSIKNHRTQVARACW 930
LD ++ NH+T + A W
Sbjct: 769 LDLLSTMVNHKTSLHDAIW 787
>DICTYBASE|DDB_G0267638 [details] [associations]
symbol:DDB_G0267638 "CHR group protein" species:44689
"Dictyostelium discoideum" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 dictyBase:DDB_G0267638 GO:GO:0005524
GO:GO:0003677 EMBL:AAFI02000003 GO:GO:0003682 SUPFAM:SSF46689
GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR017877 PROSITE:PS50090
InterPro:IPR014012 PROSITE:PS51204 KO:K11320 RefSeq:XP_647182.1
ProteinModelPortal:Q55GK2 EnsemblProtists:DDB0220518 GeneID:8615986
KEGG:ddi:DDB_G0267638 InParanoid:Q55GK2 OMA:ISFEAFA Uniprot:Q55GK2
Length = 3069
Score = 135 (52.6 bits), Expect = 5.0e-10, Sum P(5) = 5.0e-10
Identities = 35/104 (33%), Positives = 54/104 (51%)
Query: 907 WFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAV 966
W ++LDEA IKN +TQ + +RR L+GTP+QN + +L+S FL D F
Sbjct: 903 WVYMILDEAHVIKNFKTQRWQNMLHFNTERRLLLTGTPLQNNLMELWSLMHFLMPDIFQS 962
Query: 967 YKSFCSMIKVPISKNPVKG--------YKKLQAVLKTIMLRRTK 1002
++ F P++ ++G +L AVL+ +LRR K
Sbjct: 963 HREFQDWFSNPVT-GMIEGGDDVNEDIINRLHAVLRPFLLRRLK 1005
Score = 107 (42.7 bits), Expect = 5.0e-10, Sum P(5) = 5.0e-10
Identities = 26/61 (42%), Positives = 35/61 (57%)
Query: 649 ISQPNAEASAPDGVLAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIAL 708
++ N P +L PL +Q I L W+V +L+ GILAD+ GLGKTI TI+L
Sbjct: 764 LNTSNVRTKVPF-LLKFPLREYQHIGLDWLVSLYEKNLN---GILADEMGLGKTIMTISL 819
Query: 709 I 709
I
Sbjct: 820 I 820
Score = 75 (31.5 bits), Expect = 5.0e-10, Sum P(5) = 5.0e-10
Identities = 23/61 (37%), Positives = 32/61 (52%)
Query: 781 LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDP-----CELAKFDVVITTYSI 835
L+V P+SVL W E+ K G L + YHG+SR + + F V IT+YS+
Sbjct: 834 LIVVPSSVLFNW--EMEFKRWCPG-LKIFTYHGTSRDRKANRKGWSKSNAFHVCITSYSM 890
Query: 836 V 836
V
Sbjct: 891 V 891
Score = 47 (21.6 bits), Expect = 0.00023, Sum P(5) = 0.00023
Identities = 13/41 (31%), Positives = 24/41 (58%)
Query: 717 FRTEDDNKRQL--ETLNLDEEDNGIQVNG---LDLVKQESD 752
F T D++ L + +N +E+D+G Q+ L+ +K ES+
Sbjct: 657 FNTSDESSCDLSDDNINEEEDDDGEQLESKEYLEELKLESE 697
Score = 43 (20.2 bits), Expect = 1.9e-05, Sum P(3) = 1.9e-05
Identities = 19/52 (36%), Positives = 28/52 (53%)
Query: 721 DDNKRQ--LETLNLDEEDNGIQVNGLDLVKQESDYCRVVPNGSSAKSFNFVE 770
DD K+Q L LNLD++ + +NG K E ++C NG S S F++
Sbjct: 197 DDIKQQQQLSLLNLDQDKLQL-ING----KVE-EFCN--SNGFSFYSQIFID 240
Score = 38 (18.4 bits), Expect = 5.0e-10, Sum P(5) = 5.0e-10
Identities = 10/20 (50%), Positives = 12/20 (60%)
Query: 43 DRVKSSPGDLSLRNLSQDEL 62
D +K LSL NL QD+L
Sbjct: 197 DDIKQQQ-QLSLLNLDQDKL 215
Score = 38 (18.4 bits), Expect = 5.0e-10, Sum P(5) = 5.0e-10
Identities = 11/31 (35%), Positives = 14/31 (45%)
Query: 427 NSSYHDGCNSFPFKDSGQSFIGLSPSLLSQN 457
N + CNS F Q FI SL S++
Sbjct: 219 NGKVEEFCNSNGFSFYSQIFIDNLSSLTSKS 249
Score = 37 (18.1 bits), Expect = 6.2e-10, Sum P(5) = 6.2e-10
Identities = 14/55 (25%), Positives = 24/55 (43%)
Query: 420 IDEAVGRNSSYHDGCNSFPFKDSGQSFIGLSPSLLSQNQVVHAKEEHEDLILESK 474
+DE G Y+D N+ S ++ + + +KE E+L LES+
Sbjct: 644 VDED-GNEIEYNDDFNTSDESSCDLSDDNINEEEDDDGEQLESKEYLEELKLESE 697
>SGD|S000003796 [details] [associations]
symbol:RAD26 "Protein involved in transcription-coupled
nucleotide excision repair" species:4932 "Saccharomyces cerevisiae"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0006974
"response to DNA damage stimulus" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0006283
"transcription-coupled nucleotide-excision repair"
evidence=IGI;IMP] [GO:0006289 "nucleotide-excision repair"
evidence=IGI] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 SGD:S000003796 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 EMBL:BK006943 GO:GO:0003677
GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006283 GO:GO:0008094
GeneTree:ENSGT00590000083118 HOGENOM:HOG000170952 KO:K10841
EMBL:X81635 EMBL:L26910 EMBL:Z49535 PIR:JC2227 RefSeq:NP_012569.1
ProteinModelPortal:P40352 SMR:P40352 DIP:DIP-3008N IntAct:P40352
MINT:MINT-439055 STRING:P40352 PaxDb:P40352 PeptideAtlas:P40352
EnsemblFungi:YJR035W GeneID:853492 KEGG:sce:YJR035W CYGD:YJR035w
OMA:DENRIME OrthoDB:EOG44TSGZ NextBio:974125 Genevestigator:P40352
GermOnline:YJR035W Uniprot:P40352
Length = 1085
Score = 130 (50.8 bits), Expect = 6.9e-10, Sum P(5) = 6.9e-10
Identities = 39/122 (31%), Positives = 57/122 (46%)
Query: 895 LDIVAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYS 954
L I + L KV W VLDE I+N ++++ C L+ R LSGTPIQN + +L+S
Sbjct: 451 LRIHSDKLLKVKWQYAVLDEGHKIRNPDSEISLTCKKLKTHNRIILSGTPIQNNLTELWS 510
Query: 955 YFRFLRYDPFAVYKSFCSMIKVPIS----KNPVK-----GYK---KLQAVLKTIMLRRTK 1002
F F+ F +PI+ N GYK L+ ++ +LRR K
Sbjct: 511 LFDFIFPGKLGTLPVFQQQFVIPINIGGYANATNIQVQTGYKCAVALRDLISPYLLRRVK 570
Query: 1003 GE 1004
+
Sbjct: 571 AD 572
Score = 88 (36.0 bits), Expect = 6.9e-10, Sum P(5) = 6.9e-10
Identities = 20/57 (35%), Positives = 32/57 (56%)
Query: 653 NAEASAPDGVLAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 709
N++ P + ++ L +Q+ + W+ E +C GGI+ D+ GLGKTI IA I
Sbjct: 284 NSQFKIPGEIYSL-LFNYQKTCVQWLY--ELYQQNC-GGIIGDEMGLGKTIQVIAFI 336
Score = 59 (25.8 bits), Expect = 6.9e-10, Sum P(5) = 6.9e-10
Identities = 8/18 (44%), Positives = 14/18 (77%)
Query: 781 LVVCPTSVLRQWAEELRN 798
L+VCP +V++QW E ++
Sbjct: 350 LIVCPATVMKQWCNEFQH 367
Score = 51 (23.0 bits), Expect = 0.00015, Sum P(4) = 0.00015
Identities = 22/78 (28%), Positives = 35/78 (44%)
Query: 677 WMVQKETSSLHCSGGILADDQGLGKTISTIA-LILKERPPSFRTED-DN----KRQLET- 729
W T LH G +A DQ + + LI+ +P F ED N K+ LE+
Sbjct: 368 WWPPLRTVILHSMGSGMASDQKFKMDENDLENLIMNSKPSDFSYEDWKNSTRTKKALESS 427
Query: 730 LNLDEEDNGIQVNGLDLV 747
+LD+ + + +G L+
Sbjct: 428 YHLDKLIDKVVTDGHILI 445
Score = 48 (22.0 bits), Expect = 6.9e-10, Sum P(5) = 6.9e-10
Identities = 16/46 (34%), Positives = 25/46 (54%)
Query: 36 LEEEKQPDRVK----SSPGDLSLRNLSQ----DELVQDVGSHSNLQ 73
+E+++Q D K S DL + LSQ +++ DV + SNLQ
Sbjct: 1 MEDKEQQDNAKLENNESLKDLGVNVLSQSSLEEKIANDVTNFSNLQ 46
Score = 43 (20.2 bits), Expect = 6.9e-10, Sum P(5) = 6.9e-10
Identities = 13/40 (32%), Positives = 17/40 (42%)
Query: 279 INTGD-TIFGDPSSFNFQHLLSSEETATKPKDEEGEFTTE 317
I TG T FG + F+ + KDE+ E TE
Sbjct: 146 IRTGKITAFGHKAGFSLDTANREYAKNDEQKDEDFEMATE 185
>WB|WBGene00002169 [details] [associations]
symbol:isw-1 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0031491 "nucleosome binding" evidence=IEA]
[GO:0043044 "ATP-dependent chromatin remodeling" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006338 "chromatin
remodeling" evidence=IEA] [GO:0016818 "hydrolase activity, acting
on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0000003 "reproduction" evidence=IMP] [GO:0040010
"positive regulation of growth rate" evidence=IMP] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0002009 "morphogenesis of an epithelium" evidence=IMP]
[GO:0040035 "hermaphrodite genitalia development" evidence=IMP]
[GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0040027 "negative regulation of
vulval development" evidence=IMP] [GO:0016246 "RNA interference"
evidence=IMP] [GO:0008340 "determination of adult lifespan"
evidence=IMP] [GO:0000790 "nuclear chromatin" evidence=IDA]
[GO:0040026 "positive regulation of vulval development"
evidence=IGI] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR009057 InterPro:IPR015194
InterPro:IPR015195 InterPro:IPR017956 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 PROSITE:PS00690 PROSITE:PS51194
SMART:SM00384 SMART:SM00490 SMART:SM00717 GO:GO:0005524
GO:GO:0008340 GO:GO:0009792 GO:GO:0002009 GO:GO:0040007
GO:GO:0040010 GO:GO:0002119 GO:GO:0016246 GO:GO:0006355
GO:GO:0003677 GO:GO:0006351 Gene3D:1.10.10.60 SUPFAM:SSF46689
GO:GO:0000790 GO:GO:0040035 InterPro:IPR017884 PROSITE:PS51293
GO:GO:0004386 GO:GO:0040027 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0016585 GO:GO:0031491
GO:GO:0043044 GO:GO:0040026 EMBL:FO081312 PIR:S44645
RefSeq:NP_498468.2 ProteinModelPortal:P41877 SMR:P41877
STRING:P41877 PaxDb:P41877 EnsemblMetazoa:F37A4.8 GeneID:175944
KEGG:cel:CELE_F37A4.8 UCSC:F37A4.8 CTD:175944 WormBase:F37A4.8
GeneTree:ENSGT00680000100002 HOGENOM:HOG000192862 InParanoid:P41877
KO:K11654 OMA:MQRKWYK NextBio:890418 SUPFAM:SSF101224
Uniprot:P41877
Length = 1009
Score = 138 (53.6 bits), Expect = 8.5e-10, Sum P(2) = 8.5e-10
Identities = 30/103 (29%), Positives = 53/103 (51%)
Query: 902 LAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRY 961
L K+ W +++DEA IKN +++++ L ++ R ++GTP+QN + +L++ FL
Sbjct: 249 LKKLNWRYIIIDEAHRIKNEKSKLSETVRELNSENRLLITGTPLQNNLHELWALLNFLLP 308
Query: 962 DPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGE 1004
D F F S ++L VL+ +LRR K +
Sbjct: 309 DIFTSSDDFDSWFSNDAMSGNTDLVQRLHKVLQPFLLRRIKSD 351
Score = 96 (38.9 bits), Expect = 8.5e-10, Sum P(2) = 8.5e-10
Identities = 42/161 (26%), Positives = 73/161 (45%)
Query: 550 QSNSSDCKSHVDDEPDICILEDISQPARSNQSLVLGKTLSMNRSACSNHS-VALGKPVVT 608
+S+ +D VDDEP+ D + + + L L KT + + S + +A G PV T
Sbjct: 23 ESSGNDPSMEVDDEPES---SDAADSFKRFERL-LQKTENFSHCLSSGDAKLATGAPVDT 78
Query: 609 SQHSSYSDYPGYPGVPLTGLGGMKSKASDERLILQVAMQGISQPNAEASAPDGVLAVPLL 668
+ S G G + DE ++ A++ + S P + +
Sbjct: 79 KKRGRPSKKNGIDG---DHRHRKTEQEEDEEMVAD-AIKSDDLVIFDKS-PFYIENGEMR 133
Query: 669 RHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 709
+Q L+W+ + + ++ GILAD+ GLGKT+ TI++I
Sbjct: 134 DYQVRGLNWLASLQHNKIN---GILADEMGLGKTLQTISMI 171
Score = 82 (33.9 bits), Expect = 2.4e-08, Sum P(2) = 2.4e-08
Identities = 37/154 (24%), Positives = 72/154 (46%)
Query: 695 DDQGLGKTISTIALILKERPPSFRTEDDNKR--QLETLNLDEEDNGIQVNGLDLVKQESD 752
D++ + I + L++ ++ P F E+ R Q+ LN ++NG+ + E
Sbjct: 104 DEEMVADAIKSDDLVIFDKSP-FYIENGEMRDYQVRGLNWLASLQHNKINGI--LADEMG 160
Query: 753 YCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYH 812
+ + + +++ K + A+ LV+ P S L+ WA E + S ++ VL+
Sbjct: 161 LGKTL---QTISMIGYMKHYKNK-ASPHLVIVPKSTLQNWANEFKKWCPSINAV-VLIGD 215
Query: 813 GSSRT---KDPCELAKFDVVITTYSIVSMEVPKQ 843
++R +D KFDV TTY ++ ++V Q
Sbjct: 216 EAARNQVLRDVILPQKFDVCCTTYEMM-LKVKTQ 248
>DICTYBASE|DDB_G0274075 [details] [associations]
symbol:DDB_G0274075 "putative DEAD/DEAH box helicase"
species:44689 "Dictyostelium discoideum" [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0274075
dictyBase:DDB_G0273053 GO:GO:0005524 GO:GO:0003677
EMBL:AAFI02000011 EMBL:AAFI02000009 GO:GO:0004386 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 RefSeq:XP_644396.1
RefSeq:XP_645017.1 ProteinModelPortal:Q556G6
EnsemblProtists:DDB0233427 EnsemblProtists:DDB0266337
GeneID:8618694 GeneID:8619282 KEGG:ddi:DDB_G0273053
KEGG:ddi:DDB_G0274075 OMA:KTIICIA ProtClustDB:CLSZ2431099
Uniprot:Q556G6
Length = 1518
Score = 176 (67.0 bits), Expect = 8.7e-10, Sum P(2) = 8.7e-10
Identities = 64/269 (23%), Positives = 117/269 (43%)
Query: 746 LVKQESDYCRVVPNGSSAKSF-NFVEQAKGRPAAGTLVVCPTSVLRQWAEELRNKVTSKG 804
L++Q S R+ SS F N + ++GTL++ P +++QW E+ + SK
Sbjct: 651 LIRQSSAERRITTKSSSIIKFRNLI------CSSGTLLIVPNQIIKQWQFEIM--LHSK- 701
Query: 805 SLSVLVYHGSSRT-KDPCELAKFDVV-ITTYSIVSMEVPKQPLGXXXXXXXXXXXXXXXL 862
+ LV + + P EL K+DVV IT + + ++ KQ
Sbjct: 702 -IKYLVIENTDKLIPPPSELIKYDVVLITNWRLSNL---KQ-FNPTTLFNDNDDEYSSID 756
Query: 863 PPMYXXXXXXXXXXXXXXXXGSKQKKGPDGLLLDIVAGPLAKVGWFRVVLDEAQSIKNHR 922
Y GS G D +DI + ++ W R+++DE I N
Sbjct: 757 NDQYVGAGAGASNSGS----GSGNNSGEDSEFIDISIKSIFQINWLRIIIDEGHVIGNGN 812
Query: 923 TQVA-RACWGLRAKRRWCLSGTPIQNAI--DDLYSY---FRFLRYDPFAVYKS-FCSMIK 975
T ++ + W L ++R+W SGTPI +++ +L ++ FL PF F ++I
Sbjct: 813 TNLSDNSSW-LMSERKWVCSGTPISSSVLQTELINFKSICSFLSIQPFNQSVGYFNALIS 871
Query: 976 VPISKNPVKGYKKLQAVLKTIMLRRTKGE 1004
P++ ++G +++ ++ I ++ E
Sbjct: 872 NPVNNFKIQGIERICEIMNRIAVKTPHNE 900
Score = 61 (26.5 bits), Expect = 8.7e-10, Sum P(2) = 8.7e-10
Identities = 14/21 (66%), Positives = 14/21 (66%)
Query: 690 GGILADDQGLGKTISTIALIL 710
GGIL G GKTI IALIL
Sbjct: 544 GGILCQGMGTGKTIICIALIL 564
>DICTYBASE|DDB_G0273053 [details] [associations]
symbol:DDB_G0273053 "putative DEAD/DEAH box helicase"
species:44689 "Dictyostelium discoideum" [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0274075
dictyBase:DDB_G0273053 GO:GO:0005524 GO:GO:0003677
EMBL:AAFI02000011 EMBL:AAFI02000009 GO:GO:0004386 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 RefSeq:XP_644396.1
RefSeq:XP_645017.1 ProteinModelPortal:Q556G6
EnsemblProtists:DDB0233427 EnsemblProtists:DDB0266337
GeneID:8618694 GeneID:8619282 KEGG:ddi:DDB_G0273053
KEGG:ddi:DDB_G0274075 OMA:KTIICIA ProtClustDB:CLSZ2431099
Uniprot:Q556G6
Length = 1518
Score = 176 (67.0 bits), Expect = 8.7e-10, Sum P(2) = 8.7e-10
Identities = 64/269 (23%), Positives = 117/269 (43%)
Query: 746 LVKQESDYCRVVPNGSSAKSF-NFVEQAKGRPAAGTLVVCPTSVLRQWAEELRNKVTSKG 804
L++Q S R+ SS F N + ++GTL++ P +++QW E+ + SK
Sbjct: 651 LIRQSSAERRITTKSSSIIKFRNLI------CSSGTLLIVPNQIIKQWQFEIM--LHSK- 701
Query: 805 SLSVLVYHGSSRT-KDPCELAKFDVV-ITTYSIVSMEVPKQPLGXXXXXXXXXXXXXXXL 862
+ LV + + P EL K+DVV IT + + ++ KQ
Sbjct: 702 -IKYLVIENTDKLIPPPSELIKYDVVLITNWRLSNL---KQ-FNPTTLFNDNDDEYSSID 756
Query: 863 PPMYXXXXXXXXXXXXXXXXGSKQKKGPDGLLLDIVAGPLAKVGWFRVVLDEAQSIKNHR 922
Y GS G D +DI + ++ W R+++DE I N
Sbjct: 757 NDQYVGAGAGASNSGS----GSGNNSGEDSEFIDISIKSIFQINWLRIIIDEGHVIGNGN 812
Query: 923 TQVA-RACWGLRAKRRWCLSGTPIQNAI--DDLYSY---FRFLRYDPFAVYKS-FCSMIK 975
T ++ + W L ++R+W SGTPI +++ +L ++ FL PF F ++I
Sbjct: 813 TNLSDNSSW-LMSERKWVCSGTPISSSVLQTELINFKSICSFLSIQPFNQSVGYFNALIS 871
Query: 976 VPISKNPVKGYKKLQAVLKTIMLRRTKGE 1004
P++ ++G +++ ++ I ++ E
Sbjct: 872 NPVNNFKIQGIERICEIMNRIAVKTPHNE 900
Score = 61 (26.5 bits), Expect = 8.7e-10, Sum P(2) = 8.7e-10
Identities = 14/21 (66%), Positives = 14/21 (66%)
Query: 690 GGILADDQGLGKTISTIALIL 710
GGIL G GKTI IALIL
Sbjct: 544 GGILCQGMGTGKTIICIALIL 564
>UNIPROTKB|F6TQG2 [details] [associations]
symbol:SMARCA1 "Probable global transcription activator
SNF2L1" species:9606 "Homo sapiens" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0031491 "nucleosome
binding" evidence=IEA] [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF09110
Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194 SMART:SM00490
SMART:SM00717 GO:GO:0005524 GO:GO:0003677 Gene3D:1.10.10.60
SUPFAM:SSF46689 InterPro:IPR017884 PROSITE:PS51293 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0016585
GO:GO:0031491 GO:GO:0043044 ChiTaRS:SMARCA1 SUPFAM:SSF101224
EMBL:AL138745 EMBL:AL022577 HGNC:HGNC:11097 IPI:IPI00647510
ProteinModelPortal:F6TQG2 SMR:F6TQG2 PRIDE:F6TQG2
Ensembl:ENST00000450039 ArrayExpress:F6TQG2 Bgee:F6TQG2
Uniprot:F6TQG2
Length = 1005
Score = 136 (52.9 bits), Expect = 8.9e-10, Sum P(4) = 8.9e-10
Identities = 33/99 (33%), Positives = 51/99 (51%)
Query: 904 KVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDP 963
K W +V+DEA IKN +++++ ++ R L+GTP+QN + +L++ FL D
Sbjct: 281 KFHWRYLVIDEAHRIKNEKSKLSEIVREFKSTNRLLLTGTPLQNNLHELWALLNFLLPDV 340
Query: 964 FAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTK 1002
F F S K ++L AVLK +LRR K
Sbjct: 341 FNSADDFDSWFDTKNCLGDQKLVERLHAVLKPFLLRRIK 379
Score = 91 (37.1 bits), Expect = 8.9e-10, Sum P(4) = 8.9e-10
Identities = 21/52 (40%), Positives = 32/52 (61%)
Query: 658 APDGVLAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 709
+P V PL +Q L+W++ + ++ GILAD+ GLGKT+ TIAL+
Sbjct: 153 SPSYVKGGPLRDYQIRGLNWLISLYENGVN---GILADEMGLGKTLQTIALL 201
Score = 59 (25.8 bits), Expect = 8.9e-10, Sum P(4) = 8.9e-10
Identities = 19/64 (29%), Positives = 31/64 (48%)
Query: 781 LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGS--SRT---KDPCELAKFDVVITTYSI 835
+V+ P S L W E + V S L V+ + G +R +D ++DV +T+Y +
Sbjct: 215 MVLVPKSTLHNWMNEFKRWVPS---LRVICFVGDKDARAAFIRDEMMPGEWDVCVTSYEM 271
Query: 836 VSME 839
V E
Sbjct: 272 VIKE 275
Score = 38 (18.4 bits), Expect = 8.9e-10, Sum P(4) = 8.9e-10
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 452 SLLSQNQVVHAK---EEHEDLILESKR 475
SL+S H + EE E+L+ ES++
Sbjct: 116 SLISAGDYRHRRTEQEEDEELLSESRK 142
>UNIPROTKB|F1P3Q4 [details] [associations]
symbol:SMARCA1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0043044 "ATP-dependent chromatin remodeling"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0031491 "nucleosome binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0007420 "brain development" evidence=IEA] [GO:0008094
"DNA-dependent ATPase activity" evidence=IEA] [GO:0016589 "NURF
complex" evidence=IEA] [GO:0030182 "neuron differentiation"
evidence=IEA] [GO:0036310 "annealing helicase activity"
evidence=IEA] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=IEA] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR009057 InterPro:IPR015194
InterPro:IPR015195 InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 GO:GO:0005524 GO:GO:0045893
GO:GO:0003677 GO:GO:0006351 Gene3D:1.10.10.60 SUPFAM:SSF46689
InterPro:IPR017884 PROSITE:PS51293 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0031491 GO:GO:0043044
GO:GO:0016589 GO:GO:0008094 GeneTree:ENSGT00680000100002
SUPFAM:SSF101224 OMA:PMSQKRK EMBL:AADN02013587 EMBL:AADN02013588
IPI:IPI00594974 Ensembl:ENSGALT00000013737 Uniprot:F1P3Q4
Length = 982
Score = 142 (55.0 bits), Expect = 9.4e-10, Sum P(4) = 9.4e-10
Identities = 34/101 (33%), Positives = 51/101 (50%)
Query: 904 KVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDP 963
K W +V+DEA IKN +++++ + R L+GTP+QN + +L++ FL D
Sbjct: 226 KFNWRYLVIDEAHRIKNEKSKLSEIVREFKTTNRLLLTGTPLQNNLHELWALLNFLLPDV 285
Query: 964 FAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGE 1004
F F S K ++L AVLK +LRR K E
Sbjct: 286 FNSADDFDSWFDTKNCLGDQKLVERLHAVLKPFLLRRIKAE 326
Score = 86 (35.3 bits), Expect = 9.4e-10, Sum P(4) = 9.4e-10
Identities = 21/52 (40%), Positives = 31/52 (59%)
Query: 658 APDGVLAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 709
+P V L +Q L+WM+ + ++ GILAD+ GLGKT+ TIAL+
Sbjct: 98 SPSYVKGGTLRDYQVRGLNWMISLYENGVN---GILADEMGLGKTLQTIALL 146
Score = 57 (25.1 bits), Expect = 9.4e-10, Sum P(4) = 9.4e-10
Identities = 17/62 (27%), Positives = 30/62 (48%)
Query: 781 LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRT---KDPCELAKFDVVITTYSIVS 837
+V+ P S L W E + V S ++ L+ +R +D ++DV +T+Y +V
Sbjct: 160 MVLVPKSTLHNWMNEFKRWVPSLRAVC-LIGDKDARAAFIRDVMMPGEWDVCVTSYEMVI 218
Query: 838 ME 839
E
Sbjct: 219 KE 220
Score = 38 (18.4 bits), Expect = 9.4e-10, Sum P(4) = 9.4e-10
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 452 SLLSQNQVVHAK---EEHEDLILESKR 475
SL+S H + EE E+L+ ES++
Sbjct: 61 SLISAGDYRHRRTEQEEDEELLSESRK 87
>UNIPROTKB|B4E0W6 [details] [associations]
symbol:BTAF1 "TATA-binding protein-associated factor 172"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 UniGene:Hs.500526 HGNC:HGNC:17307
EMBL:AL365398 EMBL:AL359198 EMBL:AK303554 IPI:IPI01015564
SMR:B4E0W6 STRING:B4E0W6 Ensembl:ENST00000544642 HOVERGEN:HBG104002
Uniprot:B4E0W6
Length = 677
Score = 111 (44.1 bits), Expect = 1.1e-09, Sum P(3) = 1.1e-09
Identities = 27/68 (39%), Positives = 38/68 (55%)
Query: 911 VLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAVYKSF 970
+LDE IKN +T++++A L A R LSGTPIQN + +L+S F FL + F
Sbjct: 230 ILDEGHVIKNGKTKLSKAVKQLTANYRIILSGTPIQNNVLELWSLFDFLMPGFLGTERQF 289
Query: 971 CSMIKVPI 978
+ PI
Sbjct: 290 AARYGKPI 297
Score = 91 (37.1 bits), Expect = 1.1e-09, Sum P(3) = 1.1e-09
Identities = 27/91 (29%), Positives = 43/91 (47%)
Query: 619 GYPGVPLTGLGGMKSKASDERLILQVAMQGISQPNAEASAPDGVLAVPLLRHQRIALSWM 678
G P P ++ KA ER L+ + G N + P + L ++Q+ ++W+
Sbjct: 50 GIPDPPNMSAELIQLKAK-ERHFLEQLLDGKKLENYKIPVP---INAELRKYQQDGVNWL 105
Query: 679 VQKETSSLHCSGGILADDQGLGKTISTIALI 709
LH GIL DD GLGKT+ +I ++
Sbjct: 106 AFLNKYKLH---GILCDDMGLGKTLQSICIL 133
Score = 73 (30.8 bits), Expect = 1.1e-09, Sum P(3) = 1.1e-09
Identities = 16/63 (25%), Positives = 36/63 (57%)
Query: 780 TLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHG--SSRTKDPCELAKFDVVITTYSIVS 837
+LVVCP ++ W +E+ K S+ L+ L Y G + R + ++ + ++++ +Y +V
Sbjct: 157 SLVVCPPTLTGHWVDEV-GKFCSREYLNPLHYTGPPTERIRLQHQVKRHNLIVASYDVVR 215
Query: 838 MEV 840
++
Sbjct: 216 NDI 218
>ASPGD|ASPL0000061821 [details] [associations]
symbol:AN10043 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:BN001308 GO:GO:0003677
GO:GO:0004386 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
EnsemblFungi:CADANIAT00002546 HOGENOM:HOG000175622 OMA:MEIEESV
Uniprot:C8VUX5
Length = 648
Score = 144 (55.7 bits), Expect = 1.1e-09, Sum P(2) = 1.1e-09
Identities = 38/101 (37%), Positives = 53/101 (52%)
Query: 904 KVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDP 963
K W VVLDE IKN R++ + + LR++ R L+GTPIQN + +L+S +L D
Sbjct: 111 KTLWAHVVLDEGHRIKNSRSKRTQGVYRLRSENRIVLTGTPIQNDLTELWSILHWLYPDV 170
Query: 964 F--AVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTK 1002
F A K F + + K + LK +MLRRTK
Sbjct: 171 FVPATAKLFENAFSLTDGKFDSIFLSHITRFLKVVMLRRTK 211
Score = 84 (34.6 bits), Expect = 1.1e-09, Sum P(2) = 1.1e-09
Identities = 25/90 (27%), Positives = 44/90 (48%)
Query: 760 GSSAKSFNFVEQAKGRPAAGT--LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRT 817
G + ++ + + K A + LVVCP SVL W E+ T L + YHG S
Sbjct: 20 GKTLQALSLFQYVKDNERADSKFLVVCPLSVLNTWMSEISRWTTG---LRPMAYHGGSEE 76
Query: 818 KD---PC---ELAK-FDVVITTYSIVSMEV 840
++ C + A+ +++V+TTY + ++
Sbjct: 77 RENLRTCFRQQGAEPWNIVVTTYETLCSDL 106
Score = 71 (30.1 bits), Expect = 2.4e-08, Sum P(2) = 2.4e-08
Identities = 13/19 (68%), Positives = 16/19 (84%)
Query: 690 GGILADDQGLGKTISTIAL 708
GGILADD GLGKT+ ++L
Sbjct: 10 GGILADDMGLGKTLQALSL 28
>SGD|S000005831 [details] [associations]
symbol:ISW2 "ATP-dependent DNA translocase involved in
chromatin remodeling" species:4932 "Saccharomyces cerevisiae"
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA;IDA;IPI] [GO:0006338 "chromatin remodeling"
evidence=IEA;IGI;IMP;IPI] [GO:0016818 "hydrolase activity, acting
on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0031491 "nucleosome binding" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0060195 "negative
regulation of antisense RNA transcription" evidence=IGI]
[GO:0016584 "nucleosome positioning" evidence=IDA] [GO:0008623
"CHRAC" evidence=ISS;IPI] [GO:0046020 "negative regulation of
transcription from RNA polymerase II promoter by pheromones"
evidence=IMP] [GO:0006348 "chromatin silencing at telomere"
evidence=IMP] [GO:0043044 "ATP-dependent chromatin remodeling"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0016568 "chromatin modification" evidence=IEA] [GO:0000183
"chromatin silencing at rDNA" evidence=IMP] [GO:0015616 "DNA
translocase activity" evidence=IDA] [GO:0003697 "single-stranded
DNA binding" evidence=IDA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0006369
"termination of RNA polymerase II transcription" evidence=IGI]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000330
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR009057
InterPro:IPR015194 InterPro:IPR015195 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 PROSITE:PS51194 SMART:SM00490
SMART:SM00717 SGD:S000005831 GO:GO:0005524 EMBL:BK006948
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0006338 GO:GO:0003697
InterPro:IPR017884 PROSITE:PS51293 GO:GO:0000183 GO:GO:0006348
GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0031491 GO:GO:0043044 GO:GO:0016584
GO:GO:0008623 GO:GO:0006369 GO:GO:0046020 GO:GO:0060195
GO:GO:0015616 GeneTree:ENSGT00680000100002 HOGENOM:HOG000192862
SUPFAM:SSF101224 OrthoDB:EOG48SM27 EMBL:Z75212 PIR:S67208
RefSeq:NP_014948.1 ProteinModelPortal:Q08773 SMR:Q08773
DIP:DIP-6603N IntAct:Q08773 MINT:MINT-469536 STRING:Q08773
PaxDb:Q08773 PeptideAtlas:Q08773 PRIDE:Q08773 EnsemblFungi:YOR304W
GeneID:854480 KEGG:sce:YOR304W CYGD:YOR304w OMA:NEQSALS
NextBio:976792 Genevestigator:Q08773 GermOnline:YOR304W
Uniprot:Q08773
Length = 1120
Score = 123 (48.4 bits), Expect = 1.1e-09, Sum P(3) = 1.1e-09
Identities = 30/104 (28%), Positives = 56/104 (53%)
Query: 902 LAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRY 961
L ++ W +V+DEA IKN ++ +++ +K R ++GTP+QN + +L++ FL
Sbjct: 301 LKRLAWQYIVIDEAHRIKNEQSALSQIIRLFYSKNRLLITGTPLQNNLHELWALLNFLLP 360
Query: 962 DPFAVYKSFCSMIKVPISKNPVK-GYKKLQAVLKTIMLRRTKGE 1004
D F + F + S+ + ++L +VL +LRR K +
Sbjct: 361 DIFGDSELFDEWFEQNNSEQDQEIVIQQLHSVLNPFLLRRVKAD 404
Score = 82 (33.9 bits), Expect = 1.1e-09, Sum P(3) = 1.1e-09
Identities = 19/54 (35%), Positives = 31/54 (57%)
Query: 656 ASAPDGVLAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 709
+ +P V + L +Q L+W++ + L GILAD+ GLGKT+ TI+ +
Sbjct: 173 SESPSFVKSGKLRDYQVQGLNWLISLHENKL---SGILADEMGLGKTLQTISFL 223
Score = 77 (32.2 bits), Expect = 1.1e-09, Sum P(3) = 1.1e-09
Identities = 27/77 (35%), Positives = 40/77 (51%)
Query: 768 FVEQAKGRPAAGTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCEL---- 823
+V+Q +G P L++ P S L W E K T +++VLV HG T+
Sbjct: 228 YVKQIEG-PF---LIIVPKSTLDNWRREFL-KWTP--NVNVLVLHGDKDTRADIVRNIIL 280
Query: 824 -AKFDVVITTYSIVSME 839
A+FDV+IT+Y +V E
Sbjct: 281 EARFDVLITSYEMVIRE 297
>TIGR_CMR|BA_1804 [details] [associations]
symbol:BA_1804 "helicase, putative" species:198094
"Bacillus anthracis str. Ames" [GO:0003677 "DNA binding"
evidence=ISS] [GO:0004386 "helicase activity" evidence=ISS]
[GO:0006268 "DNA unwinding involved in replication" evidence=ISS]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR007527
Pfam:PF00176 Pfam:PF00271 Pfam:PF04434 PROSITE:PS50966
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
GO:GO:0008270 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 HOGENOM:HOG000026038 OMA:NTLNAEM InterPro:IPR013663
Pfam:PF08455 RefSeq:NP_844228.1 RefSeq:YP_018441.1
RefSeq:YP_027937.1 ProteinModelPortal:Q81S67 IntAct:Q81S67
DNASU:1086172 EnsemblBacteria:EBBACT00000012419
EnsemblBacteria:EBBACT00000014433 EnsemblBacteria:EBBACT00000022268
GeneID:1086172 GeneID:2814636 GeneID:2849386 KEGG:ban:BA_1804
KEGG:bar:GBAA_1804 KEGG:bat:BAS1671 ProtClustDB:CLSK916372
BioCyc:BANT260799:GJAJ-1742-MONOMER
BioCyc:BANT261594:GJ7F-1813-MONOMER Uniprot:Q81S67
Length = 1064
Score = 121 (47.7 bits), Expect = 1.1e-09, Sum P(4) = 1.1e-09
Identities = 32/88 (36%), Positives = 55/88 (62%)
Query: 912 LDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAVYKSFC 971
LDEAQ+ KN TQ ARA ++A+ R+ L+GTP++N++++L+S F + + K F
Sbjct: 737 LDEAQAFKNPTTQTARAVKTIQAEYRFGLTGTPVENSLEELWSIFHVVFPELLPGRKEFG 796
Query: 972 SMIKVPISKNPVKGY--KKLQA-VLKTI 996
+ + I+K VK + ++L+ VLK +
Sbjct: 797 DLRREDIAKR-VKPFVLRRLKEDVLKEL 823
Score = 92 (37.4 bits), Expect = 1.1e-09, Sum P(4) = 1.1e-09
Identities = 25/69 (36%), Positives = 38/69 (55%)
Query: 642 LQVAMQGISQPNA-EASAPDGVLAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLG 700
+Q ++ I P + + P + AV + +Q WM +T + + GGILADD GLG
Sbjct: 588 VQDLVESIQNPKKLKFTVPQTLRAV-MREYQVYGFEWM---KTLAYYRFGGILADDMGLG 643
Query: 701 KTISTIALI 709
KT+ +IA I
Sbjct: 644 KTLQSIAYI 652
Score = 75 (31.5 bits), Expect = 1.1e-09, Sum P(4) = 1.1e-09
Identities = 19/60 (31%), Positives = 34/60 (56%)
Query: 781 LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCELAKFDVVITTYSIVSMEV 840
LVV P+S++ W EL+ K + + + R K ++A+FDVVIT+Y ++ ++
Sbjct: 667 LVVSPSSLVYNWLSELK-KFAPHIRAVIADGNQAERRKILKDVAEFDVVITSYPLLRRDI 725
Score = 37 (18.1 bits), Expect = 1.1e-09, Sum P(4) = 1.1e-09
Identities = 7/19 (36%), Positives = 12/19 (63%)
Query: 387 SHSSRTKQMVFAKDEGNDD 405
+H TK++ A +GN+D
Sbjct: 34 NHYDETKEICEATVKGNED 52
>UNIPROTKB|P28370 [details] [associations]
symbol:SMARCA1 "Probable global transcription activator
SNF2L1" species:9606 "Homo sapiens" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0031491 "nucleosome binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0016589 "NURF complex" evidence=IDA]
[GO:0036310 "annealing helicase activity" evidence=IDA] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=IDA] [GO:0070615
"nucleosome-dependent ATPase activity" evidence=IDA] [GO:0090537
"CERF complex" evidence=IDA] [GO:0030182 "neuron differentiation"
evidence=ISS] [GO:0006338 "chromatin remodeling" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=IDA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IDA] [GO:0007420 "brain development" evidence=IMP]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=IMP] [GO:0006351 "transcription, DNA-dependent"
evidence=IMP] [GO:0000733 "DNA strand renaturation" evidence=IDA]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF09110
Pfam:PF09111 Pfam:PF13892 PROSITE:PS00690 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 GO:GO:0005524 GO:GO:0045893
GO:GO:0007420 GO:GO:0030182 GO:GO:0003677 GO:GO:0006351
Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR017884
PROSITE:PS51293 GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0031491 GO:GO:0043044
GO:GO:0016589 GO:GO:0036310 ChiTaRS:SMARCA1 SUPFAM:SSF101224
EMBL:AL138745 EMBL:M88163 EMBL:M89907 EMBL:AL022577 EMBL:BC117447
IPI:IPI00216046 IPI:IPI00646130 PIR:S35457 PIR:S35458
RefSeq:NP_003060.2 RefSeq:NP_620604.2 UniGene:Hs.152292
ProteinModelPortal:P28370 SMR:P28370 IntAct:P28370
MINT:MINT-2802155 STRING:P28370 PhosphoSite:P28370 DMDM:115311627
PaxDb:P28370 PRIDE:P28370 Ensembl:ENST00000371121
Ensembl:ENST00000371122 Ensembl:ENST00000371123 GeneID:6594
KEGG:hsa:6594 UCSC:uc004eun.4 UCSC:uc004eup.4 CTD:6594
GeneCards:GC0XM128580 HGNC:HGNC:11097 HPA:HPA003335 MIM:300012
neXtProt:NX_P28370 PharmGKB:PA35947 HOVERGEN:HBG056329
InParanoid:P28370 KO:K11727 OMA:PMSQKRK PhylomeDB:P28370
GenomeRNAi:6594 NextBio:25645 ArrayExpress:P28370 Bgee:P28370
CleanEx:HS_SMARCA1 Genevestigator:P28370 GermOnline:ENSG00000102038
Uniprot:P28370
Length = 1054
Score = 136 (52.9 bits), Expect = 1.1e-09, Sum P(4) = 1.1e-09
Identities = 33/99 (33%), Positives = 51/99 (51%)
Query: 904 KVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDP 963
K W +V+DEA IKN +++++ ++ R L+GTP+QN + +L++ FL D
Sbjct: 302 KFHWRYLVIDEAHRIKNEKSKLSEIVREFKSTNRLLLTGTPLQNNLHELWALLNFLLPDV 361
Query: 964 FAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTK 1002
F F S K ++L AVLK +LRR K
Sbjct: 362 FNSADDFDSWFDTKNCLGDQKLVERLHAVLKPFLLRRIK 400
Score = 91 (37.1 bits), Expect = 1.1e-09, Sum P(4) = 1.1e-09
Identities = 21/52 (40%), Positives = 32/52 (61%)
Query: 658 APDGVLAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 709
+P V PL +Q L+W++ + ++ GILAD+ GLGKT+ TIAL+
Sbjct: 174 SPSYVKGGPLRDYQIRGLNWLISLYENGVN---GILADEMGLGKTLQTIALL 222
Score = 59 (25.8 bits), Expect = 1.1e-09, Sum P(4) = 1.1e-09
Identities = 19/64 (29%), Positives = 31/64 (48%)
Query: 781 LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGS--SRT---KDPCELAKFDVVITTYSI 835
+V+ P S L W E + V S L V+ + G +R +D ++DV +T+Y +
Sbjct: 236 MVLVPKSTLHNWMNEFKRWVPS---LRVICFVGDKDARAAFIRDEMMPGEWDVCVTSYEM 292
Query: 836 VSME 839
V E
Sbjct: 293 VIKE 296
Score = 38 (18.4 bits), Expect = 1.1e-09, Sum P(4) = 1.1e-09
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 452 SLLSQNQVVHAK---EEHEDLILESKR 475
SL+S H + EE E+L+ ES++
Sbjct: 137 SLISAGDYRHRRTEQEEDEELLSESRK 163
>UNIPROTKB|K7GMM0 [details] [associations]
symbol:SMARCA1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=IEA] [GO:0031491
"nucleosome binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR000330
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR009057
InterPro:IPR015194 InterPro:IPR015195 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 Pfam:PF13892
PROSITE:PS51194 SMART:SM00490 SMART:SM00717 Gene3D:1.10.10.60
SUPFAM:SSF46689 InterPro:IPR017884 PROSITE:PS51293
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00680000100002 SUPFAM:SSF101224 EMBL:CU695129
GeneID:100188905 RefSeq:XP_003360491.1 Ensembl:ENSSSCT00000034062
Uniprot:K7GMM0
Length = 1057
Score = 136 (52.9 bits), Expect = 1.1e-09, Sum P(4) = 1.1e-09
Identities = 33/99 (33%), Positives = 51/99 (51%)
Query: 904 KVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDP 963
K W +V+DEA IKN +++++ ++ R L+GTP+QN + +L++ FL D
Sbjct: 305 KFHWRYLVIDEAHRIKNEKSKLSEIVREFKSTNRLLLTGTPLQNNLHELWALLNFLLPDV 364
Query: 964 FAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTK 1002
F F S K ++L AVLK +LRR K
Sbjct: 365 FNSADDFDSWFDTKNCLGDQKLVERLHAVLKPFLLRRIK 403
Score = 91 (37.1 bits), Expect = 1.1e-09, Sum P(4) = 1.1e-09
Identities = 21/52 (40%), Positives = 32/52 (61%)
Query: 658 APDGVLAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 709
+P V PL +Q L+W++ + ++ GILAD+ GLGKT+ TIAL+
Sbjct: 177 SPSYVKGGPLRDYQIRGLNWLISLYENGVN---GILADEMGLGKTLQTIALL 225
Score = 59 (25.8 bits), Expect = 1.1e-09, Sum P(4) = 1.1e-09
Identities = 19/64 (29%), Positives = 31/64 (48%)
Query: 781 LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGS--SRT---KDPCELAKFDVVITTYSI 835
+V+ P S L W E + V S L V+ + G +R +D ++DV +T+Y +
Sbjct: 239 MVLVPKSTLHNWMNEFKRWVPS---LRVICFVGDKDARAAFIRDEMMPGEWDVCVTSYEM 295
Query: 836 VSME 839
V E
Sbjct: 296 VIKE 299
Score = 38 (18.4 bits), Expect = 1.1e-09, Sum P(4) = 1.1e-09
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 452 SLLSQNQVVHAK---EEHEDLILESKR 475
SL+S H + EE E+L+ ES++
Sbjct: 140 SLISAGDYRHRRTEQEEDEELLSESRK 166
>UNIPROTKB|K7GNV1 [details] [associations]
symbol:SMARCA1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=IEA] [GO:0031491
"nucleosome binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR000330
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR009057
InterPro:IPR015194 InterPro:IPR015195 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 Pfam:PF13892
PROSITE:PS51194 SMART:SM00490 SMART:SM00717 Gene3D:1.10.10.60
SUPFAM:SSF46689 InterPro:IPR017884 PROSITE:PS51293
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00680000100002 SUPFAM:SSF101224 EMBL:CU695129
GeneID:100188905 RefSeq:XP_003360492.1 Ensembl:ENSSSCT00000032734
Uniprot:K7GNV1
Length = 1061
Score = 136 (52.9 bits), Expect = 1.1e-09, Sum P(4) = 1.1e-09
Identities = 33/99 (33%), Positives = 51/99 (51%)
Query: 904 KVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDP 963
K W +V+DEA IKN +++++ ++ R L+GTP+QN + +L++ FL D
Sbjct: 305 KFHWRYLVIDEAHRIKNEKSKLSEIVREFKSTNRLLLTGTPLQNNLHELWALLNFLLPDV 364
Query: 964 FAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTK 1002
F F S K ++L AVLK +LRR K
Sbjct: 365 FNSADDFDSWFDTKNCLGDQKLVERLHAVLKPFLLRRIK 403
Score = 91 (37.1 bits), Expect = 1.1e-09, Sum P(4) = 1.1e-09
Identities = 21/52 (40%), Positives = 32/52 (61%)
Query: 658 APDGVLAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 709
+P V PL +Q L+W++ + ++ GILAD+ GLGKT+ TIAL+
Sbjct: 177 SPSYVKGGPLRDYQIRGLNWLISLYENGVN---GILADEMGLGKTLQTIALL 225
Score = 59 (25.8 bits), Expect = 1.1e-09, Sum P(4) = 1.1e-09
Identities = 19/64 (29%), Positives = 31/64 (48%)
Query: 781 LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGS--SRT---KDPCELAKFDVVITTYSI 835
+V+ P S L W E + V S L V+ + G +R +D ++DV +T+Y +
Sbjct: 239 MVLVPKSTLHNWMNEFKRWVPS---LRVICFVGDKDARAAFIRDEMMPGEWDVCVTSYEM 295
Query: 836 VSME 839
V E
Sbjct: 296 VIKE 299
Score = 38 (18.4 bits), Expect = 1.1e-09, Sum P(4) = 1.1e-09
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 452 SLLSQNQVVHAK---EEHEDLILESKR 475
SL+S H + EE E+L+ ES++
Sbjct: 140 SLISAGDYRHRRTEQEEDEELLSESRK 166
>UNIPROTKB|F1RTI9 [details] [associations]
symbol:SMARCA1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0036310 "annealing helicase
activity" evidence=IEA] [GO:0030182 "neuron differentiation"
evidence=IEA] [GO:0016589 "NURF complex" evidence=IEA] [GO:0008094
"DNA-dependent ATPase activity" evidence=IEA] [GO:0007420 "brain
development" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=IEA] [GO:0031491 "nucleosome binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR009057 InterPro:IPR015194
InterPro:IPR015195 InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 GO:GO:0005524 GO:GO:0045893
GO:GO:0007420 GO:GO:0030182 GO:GO:0003677 GO:GO:0006351
Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR017884
PROSITE:PS51293 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0031491 GO:GO:0043044 GO:GO:0016589
GO:GO:0008094 GeneTree:ENSGT00680000100002 SUPFAM:SSF101224
OMA:PMSQKRK EMBL:CU695129 Ensembl:ENSSSCT00000013830 Uniprot:F1RTI9
Length = 1073
Score = 136 (52.9 bits), Expect = 1.2e-09, Sum P(4) = 1.2e-09
Identities = 33/99 (33%), Positives = 51/99 (51%)
Query: 904 KVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDP 963
K W +V+DEA IKN +++++ ++ R L+GTP+QN + +L++ FL D
Sbjct: 305 KFHWRYLVIDEAHRIKNEKSKLSEIVREFKSTNRLLLTGTPLQNNLHELWALLNFLLPDV 364
Query: 964 FAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTK 1002
F F S K ++L AVLK +LRR K
Sbjct: 365 FNSADDFDSWFDTKNCLGDQKLVERLHAVLKPFLLRRIK 403
Score = 91 (37.1 bits), Expect = 1.2e-09, Sum P(4) = 1.2e-09
Identities = 21/52 (40%), Positives = 32/52 (61%)
Query: 658 APDGVLAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 709
+P V PL +Q L+W++ + ++ GILAD+ GLGKT+ TIAL+
Sbjct: 177 SPSYVKGGPLRDYQIRGLNWLISLYENGVN---GILADEMGLGKTLQTIALL 225
Score = 59 (25.8 bits), Expect = 1.2e-09, Sum P(4) = 1.2e-09
Identities = 19/64 (29%), Positives = 31/64 (48%)
Query: 781 LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGS--SRT---KDPCELAKFDVVITTYSI 835
+V+ P S L W E + V S L V+ + G +R +D ++DV +T+Y +
Sbjct: 239 MVLVPKSTLHNWMNEFKRWVPS---LRVICFVGDKDARAAFIRDEMMPGEWDVCVTSYEM 295
Query: 836 VSME 839
V E
Sbjct: 296 VIKE 299
Score = 38 (18.4 bits), Expect = 1.2e-09, Sum P(4) = 1.2e-09
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 452 SLLSQNQVVHAK---EEHEDLILESKR 475
SL+S H + EE E+L+ ES++
Sbjct: 140 SLISAGDYRHRRTEQEEDEELLSESRK 166
>UNIPROTKB|K7GLQ2 [details] [associations]
symbol:SMARCA1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=IEA] [GO:0031491
"nucleosome binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR000330
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR009057
InterPro:IPR015194 InterPro:IPR015195 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 Pfam:PF13892
PROSITE:PS51194 SMART:SM00490 SMART:SM00717 Gene3D:1.10.10.60
SUPFAM:SSF46689 InterPro:IPR017884 PROSITE:PS51293
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00680000100002 SUPFAM:SSF101224 EMBL:CU695129
RefSeq:XP_003135410.1 Ensembl:ENSSSCT00000033549 GeneID:100188905
Uniprot:K7GLQ2
Length = 1073
Score = 136 (52.9 bits), Expect = 1.2e-09, Sum P(4) = 1.2e-09
Identities = 33/99 (33%), Positives = 51/99 (51%)
Query: 904 KVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDP 963
K W +V+DEA IKN +++++ ++ R L+GTP+QN + +L++ FL D
Sbjct: 305 KFHWRYLVIDEAHRIKNEKSKLSEIVREFKSTNRLLLTGTPLQNNLHELWALLNFLLPDV 364
Query: 964 FAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTK 1002
F F S K ++L AVLK +LRR K
Sbjct: 365 FNSADDFDSWFDTKNCLGDQKLVERLHAVLKPFLLRRIK 403
Score = 91 (37.1 bits), Expect = 1.2e-09, Sum P(4) = 1.2e-09
Identities = 21/52 (40%), Positives = 32/52 (61%)
Query: 658 APDGVLAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 709
+P V PL +Q L+W++ + ++ GILAD+ GLGKT+ TIAL+
Sbjct: 177 SPSYVKGGPLRDYQIRGLNWLISLYENGVN---GILADEMGLGKTLQTIALL 225
Score = 59 (25.8 bits), Expect = 1.2e-09, Sum P(4) = 1.2e-09
Identities = 19/64 (29%), Positives = 31/64 (48%)
Query: 781 LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGS--SRT---KDPCELAKFDVVITTYSI 835
+V+ P S L W E + V S L V+ + G +R +D ++DV +T+Y +
Sbjct: 239 MVLVPKSTLHNWMNEFKRWVPS---LRVICFVGDKDARAAFIRDEMMPGEWDVCVTSYEM 295
Query: 836 VSME 839
V E
Sbjct: 296 VIKE 299
Score = 38 (18.4 bits), Expect = 1.2e-09, Sum P(4) = 1.2e-09
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 452 SLLSQNQVVHAK---EEHEDLILESKR 475
SL+S H + EE E+L+ ES++
Sbjct: 140 SLISAGDYRHRRTEQEEDEELLSESRK 166
>UNIPROTKB|F1SDX0 [details] [associations]
symbol:ERCC6 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0047485 "protein N-terminus binding" evidence=IEA]
[GO:0045494 "photoreceptor cell maintenance" evidence=IEA]
[GO:0032786 "positive regulation of DNA-dependent transcription,
elongation" evidence=IEA] [GO:0032403 "protein complex binding"
evidence=IEA] [GO:0010332 "response to gamma radiation"
evidence=IEA] [GO:0010224 "response to UV-B" evidence=IEA]
[GO:0010165 "response to X-ray" evidence=IEA] [GO:0009636 "response
to toxic substance" evidence=IEA] [GO:0008630 "intrinsic apoptotic
signaling pathway in response to DNA damage" evidence=IEA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IEA]
[GO:0008023 "transcription elongation factor complex" evidence=IEA]
[GO:0008022 "protein C-terminus binding" evidence=IEA] [GO:0007257
"activation of JUN kinase activity" evidence=IEA] [GO:0007256
"activation of JNKK activity" evidence=IEA] [GO:0006290 "pyrimidine
dimer repair" evidence=IEA] [GO:0006284 "base-excision repair"
evidence=IEA] [GO:0006283 "transcription-coupled
nucleotide-excision repair" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0000303 "response to superoxide" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0008630
GO:GO:0005730 GO:GO:0006284 GO:GO:0003677 GO:GO:0009636
GO:GO:0003682 GO:GO:0045494 GO:GO:0010332 GO:GO:0004386
GO:GO:0010165 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0010224 GO:GO:0007257 GO:GO:0006283 GO:GO:0008094
GO:GO:0008023 GO:GO:0032786 GO:GO:0006290 GO:GO:0007256
GeneTree:ENSGT00590000083118 KO:K10841 OMA:NGEMQIF GO:GO:0000303
EMBL:CT990602 EMBL:CT990615 RefSeq:XP_003483566.1
Ensembl:ENSSSCT00000011375 GeneID:100738583 KEGG:ssc:100738583
Uniprot:F1SDX0
Length = 1481
Score = 121 (47.7 bits), Expect = 1.4e-09, Sum P(3) = 1.4e-09
Identities = 30/95 (31%), Positives = 44/95 (46%)
Query: 902 LAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRY 961
+++ W V+LDE I+N + AC R R LSG+P+QN + +L+S F F+
Sbjct: 624 ISRHDWHYVILDEGHKIRNPNAAITLACKQFRTPHRIILSGSPMQNNLRELWSLFDFIFP 683
Query: 962 DPFAVYKSFCSMIKVPISKNPVKGYKKLQAV-LKT 995
F VPI+ GY V +KT
Sbjct: 684 GKLGTLPVFMEQFSVPITMG---GYSNASPVQVKT 715
Score = 97 (39.2 bits), Expect = 1.4e-09, Sum P(3) = 1.4e-09
Identities = 25/67 (37%), Positives = 34/67 (50%)
Query: 661 GVLAVPLLRHQRIALSWMVQKETSSLHC--SGGILADDQGLGKTISTIALILKERPPSFR 718
G L L ++Q+ + W+ + LHC +GGIL D+ GLGKTI IA + R
Sbjct: 490 GFLFKKLFKYQQTGVRWLWE-----LHCQQAGGILGDEMGLGKTIQIIAFLAGLSYSKIR 544
Query: 719 TEDDNKR 725
T N R
Sbjct: 545 TRGSNYR 551
Score = 67 (28.6 bits), Expect = 1.4e-09, Sum P(3) = 1.4e-09
Identities = 20/65 (30%), Positives = 35/65 (53%)
Query: 780 TLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYH--GS-SRTKDPC--ELAK-FDVVITTY 833
T++VCPT+V+ QW +E T V + H GS + K+ ++A ++IT+Y
Sbjct: 558 TIIVCPTTVMHQWVKEFH---TWWPPFRVAILHETGSFTHKKEKLVRDIAHCHGILITSY 614
Query: 834 SIVSM 838
S + +
Sbjct: 615 SYIRL 619
Score = 40 (19.1 bits), Expect = 0.00065, Sum P(3) = 0.00065
Identities = 12/38 (31%), Positives = 20/38 (52%)
Query: 714 PPSFRTEDDNKRQLETLNLDEEDNGIQVNGLDLVKQES 751
P S RT++ + Q + ++ EE Q NG+ + ES
Sbjct: 7 PHSSRTQEQDCLQSQDVSESEEATIKQENGVGVELGES 44
>UNIPROTKB|E2QVR5 [details] [associations]
symbol:SMARCA1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=IEA] [GO:0031491 "nucleosome binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF09110
Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194 SMART:SM00490
SMART:SM00717 GO:GO:0005524 GO:GO:0003677 Gene3D:1.10.10.60
SUPFAM:SSF46689 InterPro:IPR017884 PROSITE:PS51293 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0016585
GO:GO:0031491 GO:GO:0043044 SUPFAM:SSF101224
Ensembl:ENSCAFT00000029649 Uniprot:E2QVR5
Length = 1073
Score = 136 (52.9 bits), Expect = 1.5e-09, Sum P(4) = 1.5e-09
Identities = 33/99 (33%), Positives = 51/99 (51%)
Query: 904 KVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDP 963
K W +V+DEA IKN +++++ ++ R L+GTP+QN + +L++ FL D
Sbjct: 314 KFHWRYLVIDEAHRIKNEKSKLSEIVREFKSTNRLLLTGTPLQNNLHELWALLNFLLPDV 373
Query: 964 FAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTK 1002
F F S K ++L AVLK +LRR K
Sbjct: 374 FNSADDFDSWFDTKNCLGDQKLVERLHAVLKPFLLRRIK 412
Score = 91 (37.1 bits), Expect = 1.5e-09, Sum P(4) = 1.5e-09
Identities = 21/52 (40%), Positives = 32/52 (61%)
Query: 658 APDGVLAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 709
+P V PL +Q L+W++ + ++ GILAD+ GLGKT+ TIAL+
Sbjct: 186 SPSYVKGGPLRDYQIRGLNWLISLYENGVN---GILADEMGLGKTLQTIALL 234
Score = 57 (25.1 bits), Expect = 1.5e-09, Sum P(4) = 1.5e-09
Identities = 19/64 (29%), Positives = 31/64 (48%)
Query: 781 LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGS--SRT---KDPCELAKFDVVITTYSI 835
+V+ P S L W E + V S L V+ + G +R +D ++DV +T+Y +
Sbjct: 248 MVLVPKSTLYNWMNEFKRWVPS---LRVICFVGDKDARAAFIRDEMMPGEWDVCVTSYEM 304
Query: 836 VSME 839
V E
Sbjct: 305 VIKE 308
Score = 39 (18.8 bits), Expect = 1.5e-09, Sum P(4) = 1.5e-09
Identities = 11/36 (30%), Positives = 19/36 (52%)
Query: 440 KDSGQSFIGLSPSLLSQNQVVHAKEEHEDLILESKR 475
KD QS I +++ +EE E+L+ ES++
Sbjct: 141 KDDKQSLISAGEYFSYRHRRTE-QEEDEELLSESRK 175
>RGD|1561046 [details] [associations]
symbol:Smarca1 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily a, member 1"
species:10116 "Rattus norvegicus" [GO:0000733 "DNA strand
renaturation" evidence=ISO] [GO:0000790 "nuclear chromatin"
evidence=ISO] [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0006338
"chromatin remodeling" evidence=ISO] [GO:0006351 "transcription,
DNA-dependent" evidence=ISO] [GO:0007420 "brain development"
evidence=ISO] [GO:0016589 "NURF complex" evidence=ISO] [GO:0030182
"neuron differentiation" evidence=ISO] [GO:0031491 "nucleosome
binding" evidence=IEA] [GO:0036310 "annealing helicase activity"
evidence=ISO] [GO:0043044 "ATP-dependent chromatin remodeling"
evidence=IEA;ISO] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=ISO] [GO:0090537 "CERF
complex" evidence=ISO] [GO:2000177 "regulation of neural precursor
cell proliferation" evidence=ISO] [GO:0008094 "DNA-dependent ATPase
activity" evidence=ISO] [GO:0070615 "nucleosome-dependent ATPase
activity" evidence=ISO] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR009057 InterPro:IPR015194
InterPro:IPR015195 InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 RGD:1561046 GO:GO:0005524 GO:GO:0003677
Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR017884
PROSITE:PS51293 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0016585 GO:GO:0031491 GO:GO:0043044
GeneTree:ENSGT00680000100002 SUPFAM:SSF101224 IPI:IPI00947680
PRIDE:D3ZIE5 Ensembl:ENSRNOT00000068478 UCSC:RGD:1561046
ArrayExpress:D3ZIE5 Uniprot:D3ZIE5
Length = 1034
Score = 136 (52.9 bits), Expect = 1.6e-09, Sum P(4) = 1.6e-09
Identities = 33/99 (33%), Positives = 51/99 (51%)
Query: 904 KVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDP 963
K W +V+DEA IKN +++++ ++ R L+GTP+QN + +L++ FL D
Sbjct: 282 KFHWRYLVIDEAHRIKNEKSKLSEIVREFKSTNRLLLTGTPLQNNLHELWALLNFLLPDV 341
Query: 964 FAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTK 1002
F F S K ++L AVLK +LRR K
Sbjct: 342 FNSADDFDSWFDTKNCLGDQKLVERLHAVLKPFLLRRIK 380
Score = 91 (37.1 bits), Expect = 1.6e-09, Sum P(4) = 1.6e-09
Identities = 21/52 (40%), Positives = 32/52 (61%)
Query: 658 APDGVLAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 709
+P V PL +Q L+W++ + ++ GILAD+ GLGKT+ TIAL+
Sbjct: 154 SPSYVKGGPLRDYQIRGLNWLISLYENGVN---GILADEMGLGKTLQTIALL 202
Score = 58 (25.5 bits), Expect = 1.6e-09, Sum P(4) = 1.6e-09
Identities = 18/64 (28%), Positives = 29/64 (45%)
Query: 781 LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTK-----DPCELAKFDVVITTYSI 835
+V+ P S L W E + V S L V+ + G + D ++DV +T+Y +
Sbjct: 216 MVLVPKSTLHNWMNEFKRWVPS---LRVICFVGDKDVRAAFIRDEMMPGEWDVCVTSYEM 272
Query: 836 VSME 839
V E
Sbjct: 273 VIKE 276
Score = 37 (18.1 bits), Expect = 1.6e-09, Sum P(4) = 1.6e-09
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 452 SLLSQNQVVHAK---EEHEDLILESKR 475
SL+S H + EE E+L+ ES++
Sbjct: 117 SLISVGDYRHRRTEQEEDEELLSESRK 143
>MGI|MGI:1935127 [details] [associations]
symbol:Smarca1 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily a, member 1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000733 "DNA strand renaturation" evidence=ISO]
[GO:0000790 "nuclear chromatin" evidence=IDA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO] [GO:0006338 "chromatin
remodeling" evidence=ISO] [GO:0006351 "transcription,
DNA-dependent" evidence=ISO] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=TAS] [GO:0007420 "brain
development" evidence=ISO;IMP] [GO:0016568 "chromatin modification"
evidence=IEA] [GO:0016589 "NURF complex" evidence=ISO] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0016817 "hydrolase activity,
acting on acid anhydrides" evidence=IEA] [GO:0016818 "hydrolase
activity, acting on acid anhydrides, in phosphorus-containing
anhydrides" evidence=IEA] [GO:0030182 "neuron differentiation"
evidence=IMP] [GO:0031491 "nucleosome binding" evidence=IEA]
[GO:0036310 "annealing helicase activity" evidence=ISO] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=ISO] [GO:0045893
"positive regulation of transcription, DNA-dependent" evidence=ISO]
[GO:0070615 "nucleosome-dependent ATPase activity" evidence=ISO]
[GO:0090537 "CERF complex" evidence=ISO] [GO:2000177 "regulation of
neural precursor cell proliferation" evidence=IGI;IMP]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF09110
Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194 SMART:SM00490
SMART:SM00717 MGI:MGI:1935127 GO:GO:0005524 GO:GO:0005634
GO:GO:0045893 GO:GO:0007420 GO:GO:0030182 GO:GO:0003677
GO:GO:0006351 Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0006338
InterPro:IPR017884 PROSITE:PS51293 GO:GO:0004386 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0031491
GO:GO:0043044 GO:GO:0016589 GO:GO:0036310 GO:GO:0008094
GeneTree:ENSGT00680000100002 HOGENOM:HOG000192862 SUPFAM:SSF101224
CTD:6594 HOVERGEN:HBG056329 KO:K11727 EMBL:AF325920 EMBL:AK030741
EMBL:AL671903 EMBL:BC057115 IPI:IPI00314654 IPI:IPI00761324
RefSeq:NP_444353.3 UniGene:Mm.229151 HSSP:Q24368
ProteinModelPortal:Q6PGB8 SMR:Q6PGB8 STRING:Q6PGB8
PhosphoSite:Q6PGB8 PaxDb:Q6PGB8 PRIDE:Q6PGB8
Ensembl:ENSMUST00000077569 Ensembl:ENSMUST00000088973
Ensembl:ENSMUST00000101616 GeneID:93761 KEGG:mmu:93761
UCSC:uc009tbl.2 UCSC:uc009tbm.2 InParanoid:B1AUP6 OrthoDB:EOG44J2H9
NextBio:351647 Bgee:Q6PGB8 Genevestigator:Q6PGB8
GermOnline:ENSMUSG00000031099 Uniprot:Q6PGB8
Length = 1046
Score = 136 (52.9 bits), Expect = 1.7e-09, Sum P(4) = 1.7e-09
Identities = 33/99 (33%), Positives = 51/99 (51%)
Query: 904 KVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDP 963
K W +V+DEA IKN +++++ ++ R L+GTP+QN + +L++ FL D
Sbjct: 306 KFHWRYLVIDEAHRIKNEKSKLSEIVREFKSTNRLLLTGTPLQNNLHELWALLNFLLPDV 365
Query: 964 FAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTK 1002
F F S K ++L AVLK +LRR K
Sbjct: 366 FNSADDFDSWFDTKNCLGDQKLVERLHAVLKPFLLRRIK 404
Score = 91 (37.1 bits), Expect = 1.7e-09, Sum P(4) = 1.7e-09
Identities = 21/52 (40%), Positives = 32/52 (61%)
Query: 658 APDGVLAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 709
+P V PL +Q L+W++ + ++ GILAD+ GLGKT+ TIAL+
Sbjct: 178 SPSYVKGGPLRDYQIRGLNWLISLYENGVN---GILADEMGLGKTLQTIALL 226
Score = 58 (25.5 bits), Expect = 1.7e-09, Sum P(4) = 1.7e-09
Identities = 18/64 (28%), Positives = 29/64 (45%)
Query: 781 LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTK-----DPCELAKFDVVITTYSI 835
+V+ P S L W E + V S L V+ + G + D ++DV +T+Y +
Sbjct: 240 MVLVPKSTLHNWMNEFKRWVPS---LRVICFVGDKDVRAAFIRDEMMPGEWDVCVTSYEM 296
Query: 836 VSME 839
V E
Sbjct: 297 VIKE 300
Score = 37 (18.1 bits), Expect = 1.7e-09, Sum P(4) = 1.7e-09
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 452 SLLSQNQVVHAK---EEHEDLILESKR 475
SL+S H + EE E+L+ ES++
Sbjct: 141 SLISVGDYRHRRTEQEEDEELLSESRK 167
>TAIR|locus:2087780 [details] [associations]
symbol:PIE1 "PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1"
species:3702 "Arabidopsis thaliana" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA;ISS]
[GO:0004386 "helicase activity" evidence=IEA;ISS] [GO:0005524 "ATP
binding" evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM]
[GO:0009910 "negative regulation of flower development"
evidence=IGI] [GO:0016514 "SWI/SNF complex" evidence=ISS]
[GO:0048441 "petal development" evidence=IGI] [GO:0048451 "petal
formation" evidence=IGI;RCA] [GO:0005618 "cell wall" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0042742 "defense
response to bacterium" evidence=IGI;RCA] [GO:0046686 "response to
cadmium ion" evidence=IEP] [GO:0000278 "mitotic cell cycle"
evidence=RCA] [GO:0003002 "regionalization" evidence=RCA]
[GO:0006338 "chromatin remodeling" evidence=RCA] [GO:0007155 "cell
adhesion" evidence=RCA] [GO:0009793 "embryo development ending in
seed dormancy" evidence=RCA] [GO:0009909 "regulation of flower
development" evidence=RCA] [GO:0010090 "trichome morphogenesis"
evidence=RCA] [GO:0010228 "vegetative to reproductive phase
transition of meristem" evidence=RCA] [GO:0033043 "regulation of
organelle organization" evidence=RCA] [GO:0045010 "actin
nucleation" evidence=RCA] [GO:0048449 "floral organ formation"
evidence=RCA] [GO:0048453 "sepal formation" evidence=RCA]
[GO:0048765 "root hair cell differentiation" evidence=RCA]
[GO:0071555 "cell wall organization" evidence=RCA]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 GO:GO:0005524 GO:GO:0005618
GO:GO:0046686 EMBL:CP002686 GO:GO:0003677 GO:GO:0042742
GO:GO:0003682 Gene3D:1.10.10.60 GO:GO:0016514 GO:GO:0004386
GO:GO:0009910 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR017877 PROSITE:PS50090
InterPro:IPR013999 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 SMART:SM00573 PROSITE:PS51204 KO:K11320 GO:GO:0048451
EMBL:AY279398 IPI:IPI00545059 RefSeq:NP_187887.3 UniGene:At.39549
SMR:Q7X9V2 IntAct:Q7X9V2 STRING:Q7X9V2 EnsemblPlants:AT3G12810.1
GeneID:820463 KEGG:ath:AT3G12810 TAIR:At3g12810 InParanoid:Q7X9V2
OMA:CCHPPPS ProtClustDB:CLSN2680833 Genevestigator:Q7X9V2
Uniprot:Q7X9V2
Length = 2055
Score = 126 (49.4 bits), Expect = 1.9e-09, Sum P(3) = 1.9e-09
Identities = 36/104 (34%), Positives = 54/104 (51%)
Query: 907 WFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAV 966
W ++LDEA IKN ++Q + +KRR L+GTP+QN + +L+S FL F
Sbjct: 658 WKYLILDEAHLIKNWKSQRWQTLLNFNSKRRILLTGTPLQNDLMELWSLMHFLMPHVFQS 717
Query: 967 YKSFCSMIKVPISKNPVKGYKK--------LQAVLKTIMLRRTK 1002
++ F PI+ V+G +K L VL+ +LRR K
Sbjct: 718 HQEFKDWFCNPIA-GMVEGQEKINKEVIDRLHNVLRPFLLRRLK 760
Score = 95 (38.5 bits), Expect = 1.9e-09, Sum P(3) = 1.9e-09
Identities = 22/43 (51%), Positives = 27/43 (62%)
Query: 667 LLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 709
L +Q I L W+V L+ GILAD+ GLGKTI TIAL+
Sbjct: 536 LREYQHIGLDWLVTMYEKKLN---GILADEMGLGKTIMTIALL 575
Score = 67 (28.6 bits), Expect = 1.9e-09, Sum P(3) = 1.9e-09
Identities = 20/61 (32%), Positives = 29/61 (47%)
Query: 781 LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDP-----CELAKFDVVITTYSI 835
L+V PTSV+ W E + +L Y GS++ + +L F V ITTY +
Sbjct: 589 LIVVPTSVMLNWETEFLKWCPA---FKILTYFGSAKERKLKRQGWMKLNSFHVCITTYRL 645
Query: 836 V 836
V
Sbjct: 646 V 646
>UNIPROTKB|F6XTU7 [details] [associations]
symbol:SMARCA1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0005634 "nucleus" evidence=IEA]
[GO:0043044 "ATP-dependent chromatin remodeling" evidence=IEA]
[GO:0031491 "nucleosome binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF09110
Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194 SMART:SM00490
SMART:SM00717 GO:GO:0005524 GO:GO:0003677 Gene3D:1.10.10.60
SUPFAM:SSF46689 InterPro:IPR017884 PROSITE:PS51293 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0016585
GO:GO:0031491 GO:GO:0043044 GeneTree:ENSGT00680000100002
SUPFAM:SSF101224 OMA:PMSQKRK EMBL:AAEX03026896
Ensembl:ENSCAFT00000029649 Uniprot:F6XTU7
Length = 1075
Score = 136 (52.9 bits), Expect = 1.9e-09, Sum P(4) = 1.9e-09
Identities = 33/99 (33%), Positives = 51/99 (51%)
Query: 904 KVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDP 963
K W +V+DEA IKN +++++ ++ R L+GTP+QN + +L++ FL D
Sbjct: 302 KFHWRYLVIDEAHRIKNEKSKLSEIVREFKSTNRLLLTGTPLQNNLHELWALLNFLLPDV 361
Query: 964 FAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTK 1002
F F S K ++L AVLK +LRR K
Sbjct: 362 FNSADDFDSWFDTKNCLGDQKLVERLHAVLKPFLLRRIK 400
Score = 91 (37.1 bits), Expect = 1.9e-09, Sum P(4) = 1.9e-09
Identities = 21/52 (40%), Positives = 32/52 (61%)
Query: 658 APDGVLAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 709
+P V PL +Q L+W++ + ++ GILAD+ GLGKT+ TIAL+
Sbjct: 174 SPSYVKGGPLRDYQIRGLNWLISLYENGVN---GILADEMGLGKTLQTIALL 222
Score = 57 (25.1 bits), Expect = 1.9e-09, Sum P(4) = 1.9e-09
Identities = 19/64 (29%), Positives = 31/64 (48%)
Query: 781 LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGS--SRT---KDPCELAKFDVVITTYSI 835
+V+ P S L W E + V S L V+ + G +R +D ++DV +T+Y +
Sbjct: 236 MVLVPKSTLYNWMNEFKRWVPS---LRVICFVGDKDARAAFIRDEMMPGEWDVCVTSYEM 292
Query: 836 VSME 839
V E
Sbjct: 293 VIKE 296
Score = 38 (18.4 bits), Expect = 1.9e-09, Sum P(4) = 1.9e-09
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 452 SLLSQNQVVHAK---EEHEDLILESKR 475
SL+S H + EE E+L+ ES++
Sbjct: 137 SLISAGDYRHRRTEQEEDEELLSESRK 163
>UNIPROTKB|F1N166 [details] [associations]
symbol:SMARCA1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0036310 "annealing helicase
activity" evidence=IEA] [GO:0030182 "neuron differentiation"
evidence=IEA] [GO:0016589 "NURF complex" evidence=IEA] [GO:0008094
"DNA-dependent ATPase activity" evidence=IEA] [GO:0007420 "brain
development" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=IEA] [GO:0031491 "nucleosome binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR009057 InterPro:IPR015194
InterPro:IPR015195 InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 GO:GO:0005524 GO:GO:0045893
GO:GO:0007420 GO:GO:0030182 GO:GO:0003677 GO:GO:0006351
Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR017884
PROSITE:PS51293 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0031491 GO:GO:0043044 GO:GO:0016589
GO:GO:0008094 GeneTree:ENSGT00680000100002 SUPFAM:SSF101224
OMA:PMSQKRK EMBL:DAAA02067438 EMBL:DAAA02067437 IPI:IPI01018574
Ensembl:ENSBTAT00000002973 Uniprot:F1N166
Length = 1078
Score = 135 (52.6 bits), Expect = 2.0e-09, Sum P(4) = 2.0e-09
Identities = 32/99 (32%), Positives = 51/99 (51%)
Query: 904 KVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDP 963
K W +V+DEA IKN +++++ ++ R L+GTP+QN + +L++ FL D
Sbjct: 305 KFHWRYLVIDEAHRIKNEKSKLSEIVRDFKSTNRLLLTGTPLQNNLHELWALLNFLLPDV 364
Query: 964 FAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTK 1002
F + F S K ++L VLK +LRR K
Sbjct: 365 FNSAEDFDSWFDTKNCLGDQKLVERLHTVLKPFLLRRIK 403
Score = 91 (37.1 bits), Expect = 2.0e-09, Sum P(4) = 2.0e-09
Identities = 21/52 (40%), Positives = 32/52 (61%)
Query: 658 APDGVLAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 709
+P V PL +Q L+W++ + ++ GILAD+ GLGKT+ TIAL+
Sbjct: 177 SPSYVKGGPLRDYQIRGLNWLISLYENGVN---GILADEMGLGKTLQTIALL 225
Score = 59 (25.8 bits), Expect = 2.0e-09, Sum P(4) = 2.0e-09
Identities = 19/64 (29%), Positives = 31/64 (48%)
Query: 781 LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGS--SRT---KDPCELAKFDVVITTYSI 835
+V+ P S L W E + V S L V+ + G +R +D ++DV +T+Y +
Sbjct: 239 MVLVPKSTLHNWMNEFKRWVPS---LRVICFVGDKDARAAFIRDEMMPGEWDVCVTSYEM 295
Query: 836 VSME 839
V E
Sbjct: 296 VIKE 299
Score = 37 (18.1 bits), Expect = 2.0e-09, Sum P(4) = 2.0e-09
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 452 SLLSQNQVVHAK---EEHEDLILESKR 475
SL+S H + EE E+L+ ES++
Sbjct: 140 SLISVGDYRHRRTEQEEDEELLSESRK 166
>UNIPROTKB|Q03468 [details] [associations]
symbol:ERCC6 "DNA excision repair protein ERCC-6"
species:9606 "Homo sapiens" [GO:0000303 "response to superoxide"
evidence=IEA] [GO:0006290 "pyrimidine dimer repair" evidence=IEA]
[GO:0007256 "activation of JNKK activity" evidence=IEA] [GO:0007257
"activation of JUN kinase activity" evidence=IEA] [GO:0008630
"intrinsic apoptotic signaling pathway in response to DNA damage"
evidence=IEA] [GO:0009636 "response to toxic substance"
evidence=IEA] [GO:0010165 "response to X-ray" evidence=IEA]
[GO:0010224 "response to UV-B" evidence=IEA] [GO:0010332 "response
to gamma radiation" evidence=IEA] [GO:0045494 "photoreceptor cell
maintenance" evidence=IEA] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=NAS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0003677 "DNA binding" evidence=IDA] [GO:0003678
"DNA helicase activity" evidence=IDA] [GO:0008094 "DNA-dependent
ATPase activity" evidence=IDA] [GO:0047485 "protein N-terminus
binding" evidence=IPI] [GO:0008022 "protein C-terminus binding"
evidence=IPI] [GO:0032784 "regulation of DNA-dependent
transcription, elongation" evidence=IDA] [GO:0008023 "transcription
elongation factor complex" evidence=IDA] [GO:0032786 "positive
regulation of DNA-dependent transcription, elongation"
evidence=IDA] [GO:0006283 "transcription-coupled
nucleotide-excision repair" evidence=IMP;TAS] [GO:0032403 "protein
complex binding" evidence=IDA] [GO:0009411 "response to UV"
evidence=IDA] [GO:0005524 "ATP binding" evidence=IDA] [GO:0005654
"nucleoplasm" evidence=IDA;TAS] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0006979
"response to oxidative stress" evidence=IDA] [GO:0006284
"base-excision repair" evidence=IMP] [GO:0003682 "chromatin
binding" evidence=IDA] [GO:0006281 "DNA repair" evidence=TAS]
[GO:0006289 "nucleotide-excision repair" evidence=TAS]
Reactome:REACT_216 InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0009411 GO:GO:0008630 GO:GO:0006979
GO:GO:0005730 GO:GO:0032403 GO:GO:0006284 GO:GO:0003677
GO:GO:0009636 GO:GO:0003682 Orphanet:279 GO:GO:0045494
GO:GO:0010332 GO:GO:0006366 GO:GO:0004386 GO:GO:0010165
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0010224 GO:GO:0007257 GO:GO:0006283 GO:GO:0008094
GO:GO:0008023 EMBL:CH471187 GO:GO:0032786 GO:GO:0006290
GO:GO:0007256 Orphanet:1466 EMBL:L04791 EMBL:AY204752 EMBL:AL138760
IPI:IPI00414779 PIR:A44224 RefSeq:NP_000115.1 UniGene:Hs.654449
ProteinModelPortal:Q03468 SMR:Q03468 DIP:DIP-193N IntAct:Q03468
MINT:MINT-1193928 STRING:Q03468 PhosphoSite:Q03468 DMDM:416959
PaxDb:Q03468 PRIDE:Q03468 Ensembl:ENST00000355832 GeneID:2074
KEGG:hsa:2074 UCSC:uc001jhr.4 CTD:2074 GeneCards:GC10M050663
HGNC:HGNC:3438 MIM:133540 MIM:214150 MIM:278800 MIM:600630
MIM:609413 MIM:613761 neXtProt:NX_Q03468 Orphanet:90321
Orphanet:90322 Orphanet:90324 Orphanet:1569 Orphanet:178338
PharmGKB:PA27852 HOGENOM:HOG000170952 HOVERGEN:HBG051502
InParanoid:Q03468 KO:K10841 OMA:NGEMQIF OrthoDB:EOG476JZF
PhylomeDB:Q03468 ChiTaRS:ERCC6 GenomeRNAi:2074 NextBio:8437
ArrayExpress:Q03468 Bgee:Q03468 CleanEx:HS_ERCC6
Genevestigator:Q03468 GermOnline:ENSG00000032514 GO:GO:0000303
Uniprot:Q03468
Length = 1493
Score = 124 (48.7 bits), Expect = 2.3e-09, Sum P(4) = 2.3e-09
Identities = 31/95 (32%), Positives = 44/95 (46%)
Query: 902 LAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRY 961
+++ W V+LDE I+N V AC R R LSG+P+QN + +L+S F F+
Sbjct: 635 ISRYDWHYVILDEGHKIRNPNAAVTLACKQFRTPHRIILSGSPMQNNLRELWSLFDFIFP 694
Query: 962 DPFAVYKSFCSMIKVPISKNPVKGYKKLQAV-LKT 995
F VPI+ GY V +KT
Sbjct: 695 GKLGTLPVFMEQFSVPITMG---GYSNASPVQVKT 726
Score = 97 (39.2 bits), Expect = 2.3e-09, Sum P(4) = 2.3e-09
Identities = 25/67 (37%), Positives = 34/67 (50%)
Query: 661 GVLAVPLLRHQRIALSWMVQKETSSLHC--SGGILADDQGLGKTISTIALILKERPPSFR 718
G L L ++Q+ + W+ + LHC +GGIL D+ GLGKTI IA + R
Sbjct: 501 GFLFKKLFKYQQTGVRWLWE-----LHCQQAGGILGDEMGLGKTIQIIAFLAGLSYSKIR 555
Query: 719 TEDDNKR 725
T N R
Sbjct: 556 TRGSNYR 562
Score = 65 (27.9 bits), Expect = 2.3e-09, Sum P(4) = 2.3e-09
Identities = 20/65 (30%), Positives = 35/65 (53%)
Query: 780 TLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYH--GS-SRTKDPC--ELAK-FDVVITTY 833
T++VCPT+V+ QW +E T V + H GS + K+ ++A ++IT+Y
Sbjct: 569 TVIVCPTTVMHQWVKEFH---TWWPPFRVAILHETGSYTHKKEKLIRDVAHCHGILITSY 625
Query: 834 SIVSM 838
S + +
Sbjct: 626 SYIRL 630
Score = 42 (19.8 bits), Expect = 2.3e-09, Sum P(4) = 2.3e-09
Identities = 8/17 (47%), Positives = 12/17 (70%)
Query: 37 EEEKQPDRVKSSPGDLS 53
EEE++ D V+ + DLS
Sbjct: 380 EEEEEDDEVEGAEADLS 396
Score = 38 (18.4 bits), Expect = 5.7e-09, Sum P(4) = 5.7e-09
Identities = 6/26 (23%), Positives = 13/26 (50%)
Query: 506 QYFPYAQPSTLNKKELDGVKEDMEAE 531
+YFP + E++G + D+ +
Sbjct: 373 EYFPTEEEEEEEDDEVEGAEADLSGD 398
>UNIPROTKB|D3ZZZ1 [details] [associations]
symbol:Ercc6 "Protein Ercc6" species:10116 "Rattus
norvegicus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 RGD:1311509
GO:GO:0005524 GO:GO:0008630 GO:GO:0005730 GO:GO:0006284
GO:GO:0003677 GO:GO:0009636 GO:GO:0003682 GO:GO:0045494
GO:GO:0010332 GO:GO:0004386 GO:GO:0010165 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0010224 GO:GO:0007257
GO:GO:0006283 GO:GO:0008094 GO:GO:0008023 GO:GO:0032786
GO:GO:0006290 GO:GO:0007256 GO:GO:0000303 IPI:IPI00358023
Ensembl:ENSRNOT00000038493 ArrayExpress:D3ZZZ1 Uniprot:D3ZZZ1
Length = 1475
Score = 119 (46.9 bits), Expect = 2.8e-09, Sum P(3) = 2.8e-09
Identities = 31/95 (32%), Positives = 43/95 (45%)
Query: 902 LAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRY 961
+++ W V+LDE I+N V AC R R LSG+P+QN + +L+S F F
Sbjct: 629 ISRHDWHYVILDEGHKIRNPNAAVTLACKQFRTPHRIILSGSPMQNNLRELWSLFDFTFP 688
Query: 962 DPFAVYKSFCSMIKVPISKNPVKGYKKLQAV-LKT 995
F VPI+ GY V +KT
Sbjct: 689 GKLGTLPVFMEQFSVPITMG---GYSNASPVQVKT 720
Score = 97 (39.2 bits), Expect = 2.8e-09, Sum P(3) = 2.8e-09
Identities = 25/67 (37%), Positives = 34/67 (50%)
Query: 661 GVLAVPLLRHQRIALSWMVQKETSSLHC--SGGILADDQGLGKTISTIALILKERPPSFR 718
G L L ++Q+ + W+ + LHC +GGIL D+ GLGKTI IA + R
Sbjct: 495 GFLFKKLFKYQQTGVRWLWE-----LHCQQAGGILGDEMGLGKTIQIIAFLAGLSYSKIR 549
Query: 719 TEDDNKR 725
T N R
Sbjct: 550 TRGSNYR 556
Score = 66 (28.3 bits), Expect = 2.8e-09, Sum P(3) = 2.8e-09
Identities = 10/16 (62%), Positives = 14/16 (87%)
Query: 780 TLVVCPTSVLRQWAEE 795
TL+VCPT+V+ QW +E
Sbjct: 563 TLIVCPTTVMHQWVKE 578
>UNIPROTKB|Q86WJ1 [details] [associations]
symbol:CHD1L "Chromodomain-helicase-DNA-binding protein
1-like" species:9606 "Homo sapiens" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IDA] [GO:0016887 "ATPase activity"
evidence=IMP] [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=TAS] [GO:0006338 "chromatin remodeling" evidence=IDA]
[GO:0006281 "DNA repair" evidence=TAS] [GO:0006974 "response to DNA
damage stimulus" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005634 "nucleus" evidence=IDA] [GO:0006200 "ATP
catabolic process" evidence=IMP] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005886
"plasma membrane" evidence=IDA] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR002464 Pfam:PF00176 Pfam:PF00271
PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490 GO:GO:0005886
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
GO:GO:0003677 GO:GO:0006281 EMBL:AL356378 GO:GO:0006338
GO:GO:0004003 HSSP:Q97XQ5 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR002589 PROSITE:PS51154
CTD:9557 HOVERGEN:HBG077542 OrthoDB:EOG4SXNBV EMBL:AF537213
EMBL:AK001342 EMBL:AK027631 EMBL:EF560738 EMBL:BC001171
EMBL:BC005038 EMBL:BC008649 EMBL:BC043501 EMBL:BC077717
EMBL:AK223496 IPI:IPI00329088 IPI:IPI00854584 IPI:IPI00890729
IPI:IPI00890749 RefSeq:NP_001243265.1 RefSeq:NP_001243266.1
RefSeq:NP_001243267.1 RefSeq:NP_004275.4 RefSeq:NP_078844.2
RefSeq:XP_003960255.1 RefSeq:XP_003960264.1 UniGene:Hs.191164
ProteinModelPortal:Q86WJ1 SMR:Q86WJ1 DIP:DIP-48933N IntAct:Q86WJ1
STRING:Q86WJ1 PhosphoSite:Q86WJ1 DMDM:311033359 PaxDb:Q86WJ1
PRIDE:Q86WJ1 Ensembl:ENST00000369258 Ensembl:ENST00000369259
Ensembl:ENST00000431239 Ensembl:ENST00000579763
Ensembl:ENST00000583055 GeneID:101060601 GeneID:9557
KEGG:hsa:101060601 KEGG:hsa:9557 UCSC:uc001epm.4 UCSC:uc001epo.4
UCSC:uc009wjh.3 GeneCards:GC01P146717 H-InvDB:HIX0000988
H-InvDB:HIX0028745 HGNC:HGNC:1916 HPA:HPA027789 HPA:HPA028670
MIM:613039 neXtProt:NX_Q86WJ1 PharmGKB:PA26452 InParanoid:Q86WJ1
OMA:TCQTIAL PhylomeDB:Q86WJ1 ChiTaRS:CHD1L GenomeRNAi:9557
NextBio:35849 ArrayExpress:Q86WJ1 Bgee:Q86WJ1 CleanEx:HS_CHD1L
Genevestigator:Q86WJ1 Uniprot:Q86WJ1
Length = 897
Score = 105 (42.0 bits), Expect = 3.1e-09, Sum P(3) = 3.1e-09
Identities = 30/100 (30%), Positives = 49/100 (49%)
Query: 907 WFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAV 966
W +V+DEA +KN + + + L+GTPIQN++ +LYS F+ D F+
Sbjct: 168 WSVLVVDEAHRLKNQSSLLHKTLSEFSVVFSLLLTGTPIQNSLQELYSLLSFVEPDLFSK 227
Query: 967 YK--SFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGE 1004
+ F + I K + +L +L+ +LRR K E
Sbjct: 228 EEVGDFIQRYQ-DIEKES-ESASELHKLLQPFLLRRVKAE 265
Score = 91 (37.1 bits), Expect = 3.1e-09, Sum P(3) = 3.1e-09
Identities = 20/51 (39%), Positives = 29/51 (56%)
Query: 661 GVLAVPLLRHQRIALSWMVQKETSSLHCSGG-ILADDQGLGKTISTIALIL 710
G+ + L +Q ++W+ Q+ HC G IL D+ GLGKT TIAL +
Sbjct: 40 GLTGIHLRSYQLEGVNWLAQR----FHCQNGCILGDEMGLGKTCQTIALFI 86
Score = 79 (32.9 bits), Expect = 3.1e-09, Sum P(3) = 3.1e-09
Identities = 21/60 (35%), Positives = 33/60 (55%)
Query: 781 LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTK-----DPCELAKFDVVITTYSI 835
L++CP SVL W EE++ + G LS + Y G + D + ++F V++TTY I
Sbjct: 99 LILCPLSVLSNWKEEMQR--FAPG-LSCVTYAGDKEERACLQQDLKQESRFHVLLTTYEI 155
>MGI|MGI:1915308 [details] [associations]
symbol:Chd1l "chromodomain helicase DNA binding protein
1-like" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=ISO] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISO] [GO:0006200 "ATP
catabolic process" evidence=ISO] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0006338 "chromatin remodeling" evidence=ISO]
[GO:0006974 "response to DNA damage stimulus" evidence=ISO]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0016887 "ATPase
activity" evidence=ISO] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
MGI:MGI:1915308 GO:GO:0005886 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0000166 GO:GO:0003677 GO:GO:0006281
GO:GO:0006974 GO:GO:0016887 GO:GO:0006338 GO:GO:0004386 HSSP:Q97XQ5
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR002589 PROSITE:PS51154 CTD:9557 HOGENOM:HOG000030789
HOVERGEN:HBG077542 OrthoDB:EOG4SXNBV OMA:TCQTIAL ChiTaRS:CHD1L
EMBL:AK014473 EMBL:AK165656 EMBL:BC052385 EMBL:BC057567
EMBL:BC062966 IPI:IPI00466859 IPI:IPI00890897 RefSeq:NP_080815.1
UniGene:Mm.41447 ProteinModelPortal:Q9CXF7 SMR:Q9CXF7
DIP:DIP-58953N STRING:Q9CXF7 PhosphoSite:Q9CXF7 PaxDb:Q9CXF7
PRIDE:Q9CXF7 Ensembl:ENSMUST00000029730 GeneID:68058 KEGG:mmu:68058
UCSC:uc008qow.1 UCSC:uc008qox.1 GeneTree:ENSGT00670000098110
InParanoid:Q9CXF7 NextBio:326336 Bgee:Q9CXF7 Genevestigator:Q9CXF7
Uniprot:Q9CXF7
Length = 900
Score = 106 (42.4 bits), Expect = 3.1e-09, Sum P(3) = 3.1e-09
Identities = 32/105 (30%), Positives = 49/105 (46%)
Query: 902 LAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRY 961
L W + +DEA +KN + + R A R L+GTPIQN++ +LYS +
Sbjct: 157 LKSFSWSVLAVDEAHRLKNQSSLLHRTLSEFSAVFRLLLTGTPIQNSLRELYSLLCVVEP 216
Query: 962 DPFA--VYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGE 1004
D F + F + I K K +L +L+ +LRR K +
Sbjct: 217 DLFCREQVEDFVQRYQ-DIEKES-KSASELHRLLQPFLLRRVKAQ 259
Score = 94 (38.1 bits), Expect = 3.1e-09, Sum P(3) = 3.1e-09
Identities = 21/51 (41%), Positives = 30/51 (58%)
Query: 661 GVLAVPLLRHQRIALSWMVQKETSSLHCSGG-ILADDQGLGKTISTIALIL 710
G+ + L +Q ++W+VQ HC G IL D+ GLGKT TIAL++
Sbjct: 34 GLTGIRLRSYQLEGVNWLVQ----CFHCQNGCILGDEMGLGKTCQTIALLI 80
Score = 75 (31.5 bits), Expect = 3.1e-09, Sum P(3) = 3.1e-09
Identities = 22/60 (36%), Positives = 31/60 (51%)
Query: 781 LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTK-----DPCELAKFDVVITTYSI 835
LV+CP SVL W EE+ + G LS + Y G + D + + F V++TTY I
Sbjct: 93 LVLCPLSVLSNWKEEMER--FAPG-LSCVTYTGDKEERARLQQDLRQESGFHVLLTTYEI 149
>SGD|S000000449 [details] [associations]
symbol:ISW1 "ATPase subunit of imitation-switch (ISWI) class
chromatin remodelers" species:4932 "Saccharomyces cerevisiae"
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0006369
"termination of RNA polymerase II transcription" evidence=IGI]
[GO:0034401 "regulation of transcription by chromatin organization"
evidence=IMP] [GO:0016887 "ATPase activity" evidence=IDA]
[GO:0031491 "nucleosome binding" evidence=IEA;IDA] [GO:0003677 "DNA
binding" evidence=IEA;IDA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IMP]
[GO:0030874 "nucleolar chromatin" evidence=IDA] [GO:0000182 "rDNA
binding" evidence=IDA] [GO:0006363 "termination of RNA polymerase I
transcription" evidence=IGI] [GO:0070870 "heterochromatin
maintenance involved in chromatin silencing" evidence=IGI;IMP]
[GO:0016587 "Isw1 complex" evidence=IPI] [GO:0006354 "DNA-dependent
transcription, elongation" evidence=IMP;IDA] [GO:0006338 "chromatin
remodeling" evidence=IEA;IGI;IMP;IPI] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA;IDA] [GO:0016818 "hydrolase activity, acting
on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0043044 "ATP-dependent chromatin remodeling"
evidence=IEA] [GO:0001178 "regulation of transcriptional start site
selection at RNA polymerase II promoter" evidence=IGI] [GO:0016568
"chromatin modification" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0016584 "nucleosome positioning"
evidence=IGI;IMP] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR009057 InterPro:IPR015194
InterPro:IPR015195 Pfam:PF00176 Pfam:PF00271 Pfam:PF09110
Pfam:PF09111 PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490
SMART:SM00717 SGD:S000000449 GO:GO:0005524 GO:GO:0006200
GO:GO:0045944 EMBL:BK006936 Gene3D:1.10.10.60 SUPFAM:SSF46689
GO:GO:0006338 InterPro:IPR017884 PROSITE:PS51293 GO:GO:0004386
GO:GO:0034401 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0031491 GO:GO:0043044 GO:GO:0016584
GO:GO:0006363 GO:GO:0006354 GO:GO:0006369
GeneTree:ENSGT00670000098110 GO:GO:0030874 GO:GO:0000182
GO:GO:0001178 GO:GO:0070870 GO:GO:0016587 PDB:2Y9Y PDB:2Y9Z
PDBsum:2Y9Y PDBsum:2Y9Z HOGENOM:HOG000192862 SUPFAM:SSF101224
EMBL:Z36114 PIR:S46122 RefSeq:NP_009804.1 ProteinModelPortal:P38144
SMR:P38144 DIP:DIP-6601N IntAct:P38144 MINT:MINT-614918
STRING:P38144 PaxDb:P38144 PeptideAtlas:P38144 EnsemblFungi:YBR245C
GeneID:852547 KEGG:sce:YBR245C CYGD:YBR245c OMA:LEMITHG
OrthoDB:EOG48SM27 EvolutionaryTrace:P38144 NextBio:971628
Genevestigator:P38144 GermOnline:YBR245C Uniprot:P38144
Length = 1129
Score = 142 (55.0 bits), Expect = 3.5e-09, Sum P(4) = 3.5e-09
Identities = 31/105 (29%), Positives = 56/105 (53%)
Query: 901 PLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLR 960
PL K+ W +++DEA IKN + +++ ++ R ++GTP+QN + +L++ FL
Sbjct: 312 PLKKINWEYIIIDEAHRIKNEESMLSQVLREFTSRNRLLITGTPLQNNLHELWALLNFLL 371
Query: 961 YDPFAVYKSFCSMIKVPISKNPV-KGYKKLQAVLKTIMLRRTKGE 1004
D F+ + F ++ K K+L VL+ +LRR K +
Sbjct: 372 PDIFSDAQDFDDWFSSESTEEDQDKIVKQLHTVLQPFLLRRIKSD 416
Score = 74 (31.1 bits), Expect = 3.5e-09, Sum P(4) = 3.5e-09
Identities = 17/43 (39%), Positives = 27/43 (62%)
Query: 668 LRHQRI-ALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 709
LR +I ++W+V + + GILAD+ GLGKT+ TI+ +
Sbjct: 196 LRPYQIQGVNWLVSLHKNKI---AGILADEMGLGKTLQTISFL 235
Score = 66 (28.3 bits), Expect = 3.5e-09, Sum P(4) = 3.5e-09
Identities = 22/70 (31%), Positives = 31/70 (44%)
Query: 781 LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCELAK-----FDVVITTYSI 835
LV+ P S L W E+ N+ T ++ + G + K FDVVI +Y I
Sbjct: 249 LVIAPKSTLNNWLREI-NRWTP--DVNAFILQGDKEERAELIQKKLLGCDFDVVIASYEI 305
Query: 836 VSMEVPKQPL 845
+ E K PL
Sbjct: 306 IIRE--KSPL 313
Score = 38 (18.4 bits), Expect = 3.5e-09, Sum P(4) = 3.5e-09
Identities = 12/51 (23%), Positives = 24/51 (47%)
Query: 32 LLGILEEEKQPDRVKSSPGDLSLRNLSQDE---LVQDVGSHSNLQLQSGFK 79
+L +LEE K + K D+ R +E L+++ S + ++ F+
Sbjct: 136 VLDVLEENKANGKGKGKHQDVRRRKTEHEEDAELLKEEDSDDDESIEFQFR 186
>UNIPROTKB|E1BYA8 [details] [associations]
symbol:ERCC6 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0000303 "response to superoxide" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0006283 "transcription-coupled
nucleotide-excision repair" evidence=IEA] [GO:0006284
"base-excision repair" evidence=IEA] [GO:0006290 "pyrimidine dimer
repair" evidence=IEA] [GO:0007256 "activation of JNKK activity"
evidence=IEA] [GO:0007257 "activation of JUN kinase activity"
evidence=IEA] [GO:0008022 "protein C-terminus binding"
evidence=IEA] [GO:0008023 "transcription elongation factor complex"
evidence=IEA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IEA] [GO:0008630 "intrinsic apoptotic signaling pathway in
response to DNA damage" evidence=IEA] [GO:0009636 "response to
toxic substance" evidence=IEA] [GO:0010165 "response to X-ray"
evidence=IEA] [GO:0010224 "response to UV-B" evidence=IEA]
[GO:0010332 "response to gamma radiation" evidence=IEA] [GO:0032403
"protein complex binding" evidence=IEA] [GO:0032786 "positive
regulation of DNA-dependent transcription, elongation"
evidence=IEA] [GO:0045494 "photoreceptor cell maintenance"
evidence=IEA] [GO:0047485 "protein N-terminus binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0008630 GO:GO:0005730 GO:GO:0006284 GO:GO:0003677
GO:GO:0009636 GO:GO:0003682 GO:GO:0010332 GO:GO:0004386
GO:GO:0010165 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0010224 GO:GO:0007257 GO:GO:0006283 GO:GO:0008094
GO:GO:0008023 GO:GO:0032786 GO:GO:0006290 GO:GO:0007256
GeneTree:ENSGT00590000083118 OMA:NGEMQIF GO:GO:0000303
EMBL:AADN02027759 EMBL:AADN02027760 IPI:IPI00592927
Ensembl:ENSGALT00000010107 Uniprot:E1BYA8
Length = 1498
Score = 121 (47.7 bits), Expect = 3.8e-09, Sum P(4) = 3.8e-09
Identities = 31/90 (34%), Positives = 41/90 (45%)
Query: 907 WFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAV 966
W V+LDE I+N V AC R R LSG+P+QN + +L+S F F+
Sbjct: 635 WHYVILDEGHKIRNPNAAVTLACKQFRTPHRIILSGSPMQNNLKELWSLFDFVFPGKLGT 694
Query: 967 YKSFCSMIKVPISKNPVKGYKKLQAV-LKT 995
F VPI+ GY V +KT
Sbjct: 695 LPVFMEQFSVPITMG---GYSNASPVQVKT 721
Score = 97 (39.2 bits), Expect = 3.8e-09, Sum P(4) = 3.8e-09
Identities = 25/67 (37%), Positives = 34/67 (50%)
Query: 661 GVLAVPLLRHQRIALSWMVQKETSSLHC--SGGILADDQGLGKTISTIALILKERPPSFR 718
G L L ++Q+ + W+ + LHC +GGIL D+ GLGKTI IA + R
Sbjct: 496 GFLFKKLFKYQQTGVRWLWE-----LHCQQAGGILGDEMGLGKTIQIIAFLAGLSYSKIR 550
Query: 719 TEDDNKR 725
T N R
Sbjct: 551 TRGSNYR 557
Score = 64 (27.6 bits), Expect = 3.8e-09, Sum P(4) = 3.8e-09
Identities = 20/65 (30%), Positives = 33/65 (50%)
Query: 780 TLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYH--GS---SRTKDPCELAK-FDVVITTY 833
T++VCP +V+ QW +E T V + H GS + K E+A ++IT+Y
Sbjct: 564 TVIVCPATVMHQWVKEFH---TWWPPFRVAILHETGSYTNKKVKLIREIASCHGILITSY 620
Query: 834 SIVSM 838
S + +
Sbjct: 621 SYIRL 625
Score = 44 (20.5 bits), Expect = 3.8e-09, Sum P(4) = 3.8e-09
Identities = 6/22 (27%), Positives = 12/22 (54%)
Query: 544 LSPESIQSNSSDCKSHVDDEPD 565
L PE+++ SH +++ D
Sbjct: 381 LEPEAVEEEEEQASSHAENDSD 402
Score = 43 (20.2 bits), Expect = 4.8e-09, Sum P(4) = 4.8e-09
Identities = 10/22 (45%), Positives = 12/22 (54%)
Query: 37 EEEKQPDRVKSSPGDLSLRNLS 58
EEE+Q + D LRNLS
Sbjct: 388 EEEEQASSHAENDSDYELRNLS 409
>UNIPROTKB|E2QSK6 [details] [associations]
symbol:ERCC6L "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0047485 "protein N-terminus binding"
evidence=IEA] [GO:0045494 "photoreceptor cell maintenance"
evidence=IEA] [GO:0032786 "positive regulation of DNA-dependent
transcription, elongation" evidence=IEA] [GO:0032403 "protein
complex binding" evidence=IEA] [GO:0010332 "response to gamma
radiation" evidence=IEA] [GO:0010224 "response to UV-B"
evidence=IEA] [GO:0010165 "response to X-ray" evidence=IEA]
[GO:0009636 "response to toxic substance" evidence=IEA] [GO:0008630
"intrinsic apoptotic signaling pathway in response to DNA damage"
evidence=IEA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IEA] [GO:0008023 "transcription elongation factor complex"
evidence=IEA] [GO:0008022 "protein C-terminus binding"
evidence=IEA] [GO:0007257 "activation of JUN kinase activity"
evidence=IEA] [GO:0007256 "activation of JNKK activity"
evidence=IEA] [GO:0006290 "pyrimidine dimer repair" evidence=IEA]
[GO:0006284 "base-excision repair" evidence=IEA] [GO:0006283
"transcription-coupled nucleotide-excision repair" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0003682 "chromatin
binding" evidence=IEA] [GO:0000303 "response to superoxide"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0008630 GO:GO:0005730 GO:GO:0006284 GO:GO:0003677
GO:GO:0009636 GO:GO:0003682 GO:GO:0045494 GO:GO:0010332
GO:GO:0004386 GO:GO:0010165 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0010224 GO:GO:0007257 GO:GO:0006283
GO:GO:0008094 GO:GO:0008023 GO:GO:0032786 GO:GO:0006290
GO:GO:0007256 GeneTree:ENSGT00590000083118 CTD:2074 KO:K10841
OMA:NGEMQIF GO:GO:0000303 EMBL:AAEX03015368 RefSeq:XP_534944.2
UniGene:Cfa.1909 Ensembl:ENSCAFT00000010674 GeneID:477747
KEGG:cfa:477747 NextBio:20853169 Uniprot:E2QSK6
Length = 1486
Score = 122 (48.0 bits), Expect = 4.6e-09, Sum P(4) = 4.6e-09
Identities = 31/95 (32%), Positives = 44/95 (46%)
Query: 902 LAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRY 961
+++ W V+LDE I+N V AC R R LSG+P+QN + +L+S F F+
Sbjct: 631 ISRHDWHYVILDEGHKIRNPNAAVTLACKQFRTPHRIILSGSPMQNNLRELWSLFDFIFP 690
Query: 962 DPFAVYKSFCSMIKVPISKNPVKGYKKLQAV-LKT 995
F VPI+ GY V +KT
Sbjct: 691 GKLGTLPVFMEQFSVPITMG---GYSNASPVQVKT 722
Score = 96 (38.9 bits), Expect = 4.6e-09, Sum P(4) = 4.6e-09
Identities = 25/67 (37%), Positives = 34/67 (50%)
Query: 661 GVLAVPLLRHQRIALSWMVQKETSSLHC--SGGILADDQGLGKTISTIALILKERPPSFR 718
G L L ++Q+ + W+ + LHC +GGIL D+ GLGKTI IA + R
Sbjct: 497 GFLFRKLFKYQQTGVRWLWE-----LHCQQAGGILGDEMGLGKTIQIIAFLAGLSYSKIR 551
Query: 719 TEDDNKR 725
T N R
Sbjct: 552 TRGSNYR 558
Score = 68 (29.0 bits), Expect = 4.6e-09, Sum P(4) = 4.6e-09
Identities = 20/65 (30%), Positives = 36/65 (55%)
Query: 780 TLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYH--GS-SRTKDPC--ELAK-FDVVITTY 833
T++VCPT+V+ QW +E T V + H GS ++ K+ ++A ++IT+Y
Sbjct: 565 TIIVCPTTVMHQWVKEFH---TWWPPFRVAILHETGSYTQKKEKLIRDIAHCHGILITSY 621
Query: 834 SIVSM 838
S + +
Sbjct: 622 SYIRL 626
Score = 39 (18.8 bits), Expect = 4.6e-09, Sum P(4) = 4.6e-09
Identities = 16/54 (29%), Positives = 25/54 (46%)
Query: 380 QPCTYSHSHSSRT---KQMVFAK--DEGNDDLFPCWSTVSDSVEPIDEAVGRNS 428
Q C S + S+ KQ + K D+GN ++ + S + P A GR+S
Sbjct: 15 QDCLLSKTEQSQCVSDKQEMTIKQEDDGNMEVEESLPSCSSANGPSASAEGRSS 68
>ZFIN|ZDB-GENE-070705-296 [details] [associations]
symbol:si:dkey-148b12.1 "si:dkey-148b12.1"
species:7955 "Danio rerio" [GO:0016817 "hydrolase activity, acting
on acid anhydrides" evidence=IEA] [GO:0043044 "ATP-dependent
chromatin remodeling" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0016818 "hydrolase
activity, acting on acid anhydrides, in phosphorus-containing
anhydrides" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0031491
"nucleosome binding" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0006338 "chromatin remodeling" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF09110
Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194 SMART:SM00490
SMART:SM00717 ZFIN:ZDB-GENE-070705-296 GO:GO:0005524 GO:GO:0003677
Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR017884
PROSITE:PS51293 GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0016585 GO:GO:0031491
GO:GO:0043044 GeneTree:ENSGT00680000100002 HOGENOM:HOG000192862
SUPFAM:SSF101224 HOVERGEN:HBG056329 KO:K11727 OrthoDB:EOG44J2H9
EMBL:CR848717 EMBL:CU104724 IPI:IPI00488326 RefSeq:NP_001093467.1
UniGene:Dr.81160 SMR:A5WUY4 Ensembl:ENSDART00000020725
GeneID:559803 KEGG:dre:559803 OMA:IGHAWIN NextBio:20883144
Uniprot:A5WUY4
Length = 1036
Score = 138 (53.6 bits), Expect = 4.9e-09, Sum P(4) = 4.9e-09
Identities = 34/101 (33%), Positives = 52/101 (51%)
Query: 904 KVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDP 963
K W +V+DEA IKN +++++ + R L+GTP+QN + +L+S FL D
Sbjct: 262 KFNWRYLVIDEAHRIKNEKSKLSEIAREFKTTNRLLLTGTPLQNNLHELWSLLNFLLPDV 321
Query: 964 FAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGE 1004
F F S + K ++L AVL+ +LRR K E
Sbjct: 322 FNSASDFDSWFDTNCLGDQ-KLVERLHAVLRPFLLRRIKAE 361
Score = 86 (35.3 bits), Expect = 4.9e-09, Sum P(4) = 4.9e-09
Identities = 20/43 (46%), Positives = 29/43 (67%)
Query: 668 LRHQRI-ALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 709
LR +I L+WM+ + ++ GILAD+ GLGKT+ TIAL+
Sbjct: 143 LRDYQIRGLNWMISLYENGIN---GILADEMGLGKTLQTIALL 182
Score = 55 (24.4 bits), Expect = 4.9e-09, Sum P(4) = 4.9e-09
Identities = 16/62 (25%), Positives = 30/62 (48%)
Query: 781 LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRT---KDPCELAKFDVVITTYSIVS 837
+V+ P S L W E + V + ++ L+ + R +D ++DV +T+Y +V
Sbjct: 196 MVLVPKSTLHNWMNEFKRWVPTLKAVC-LIGNKDERAAFIRDVMMPGEWDVCVTSYEMVI 254
Query: 838 ME 839
E
Sbjct: 255 RE 256
Score = 38 (18.4 bits), Expect = 4.9e-09, Sum P(4) = 4.9e-09
Identities = 7/14 (50%), Positives = 12/14 (85%)
Query: 463 KEEHEDLILESKRA 476
+EE E+L+ ES++A
Sbjct: 111 QEEDEELLSESRKA 124
>UNIPROTKB|F1P0A4 [details] [associations]
symbol:SMARCA5 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0016817 "hydrolase activity, acting
on acid anhydrides" evidence=IEA] InterPro:IPR000330
InterPro:IPR020838 Pfam:PF00176 Pfam:PF13892 GO:GO:0005524
GO:GO:0003677 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0016817 GeneTree:ENSGT00680000100002 EMBL:AADN02016239
EMBL:AADN02016240 IPI:IPI00819661 Ensembl:ENSGALT00000038610
ArrayExpress:F1P0A4 Uniprot:F1P0A4
Length = 469
Score = 132 (51.5 bits), Expect = 5.8e-09, Sum P(3) = 5.8e-09
Identities = 31/101 (30%), Positives = 51/101 (50%)
Query: 904 KVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDP 963
K W +V+DEA IKN +++++ + R L+GTP+QN + +L++ FL D
Sbjct: 284 KFNWRYLVIDEAHRIKNEKSKLSEIVREFKTTNRLLLTGTPLQNNLHELWALLNFLLPDV 343
Query: 964 FAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGE 1004
F + F S K ++L VL+ +LRR K +
Sbjct: 344 FNSSEDFDSWFDTNNCLGDQKLVERLHMVLRPFLLRRIKAD 384
Score = 79 (32.9 bits), Expect = 5.8e-09, Sum P(3) = 5.8e-09
Identities = 17/43 (39%), Positives = 29/43 (67%)
Query: 668 LRHQRI-ALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 709
LR ++ L+W++ + ++ GILAD+ GLGKT+ TI+L+
Sbjct: 165 LRDYQVRGLNWLISLYENGIN---GILADEMGLGKTLQTISLL 204
Score = 49 (22.3 bits), Expect = 5.8e-09, Sum P(3) = 5.8e-09
Identities = 13/61 (21%), Positives = 30/61 (49%)
Query: 781 LVVCPTSVLRQWAEELRNKVTSKGSLSVL--VYHGSSRTKDPCELAKFDVVITTYSIVSM 838
+V+ P S L W E + V + ++ ++ ++ +D ++DV +T+Y ++
Sbjct: 218 MVLVPKSTLHNWMNEFKRWVPTLRAVCLIGDKDQRAAFVRDVLLPGEWDVCVTSYEMLIK 277
Query: 839 E 839
E
Sbjct: 278 E 278
>UNIPROTKB|F1NHJ5 [details] [associations]
symbol:BTAF1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR000357
InterPro:IPR001650 InterPro:IPR016024 Pfam:PF00176 Pfam:PF00271
Pfam:PF02985 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
InterPro:IPR021133 PROSITE:PS50077 GO:GO:0003677 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 OMA:TKQEGAI
InterPro:IPR022707 Pfam:PF12054 GeneTree:ENSGT00630000089754
EMBL:AADN02046597 IPI:IPI00572097 Ensembl:ENSGALT00000011235
Uniprot:F1NHJ5
Length = 1845
Score = 112 (44.5 bits), Expect = 6.4e-09, Sum P(5) = 6.4e-09
Identities = 30/84 (35%), Positives = 46/84 (54%)
Query: 911 VLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAVYKSF 970
+LDE IKN +T++++A L A R LSGTPIQN + +L+S F FL + F
Sbjct: 1395 ILDEGHVIKNGKTKLSKAVKQLTANYRIILSGTPIQNNVLELWSLFDFLMPGFLGTERQF 1454
Query: 971 CSMIKVPI--SKNPVKGYKKLQAV 992
+ PI S++ ++ +AV
Sbjct: 1455 AARYGKPILASRDARSSSREQEAV 1478
Score = 91 (37.1 bits), Expect = 6.4e-09, Sum P(5) = 6.4e-09
Identities = 27/91 (29%), Positives = 43/91 (47%)
Query: 619 GYPGVPLTGLGGMKSKASDERLILQVAMQGISQPNAEASAPDGVLAVPLLRHQRIALSWM 678
G P P ++ KA ER L+ + G N + P + L ++Q+ ++W+
Sbjct: 1215 GIPDPPNMSEELIQMKAK-ERHFLEQLLDGKKLENYKIPVP---IKAELRKYQQDGVNWL 1270
Query: 679 VQKETSSLHCSGGILADDQGLGKTISTIALI 709
LH GIL DD GLGKT+ +I ++
Sbjct: 1271 AFLNKYKLH---GILCDDMGLGKTLQSICIL 1298
Score = 78 (32.5 bits), Expect = 6.4e-09, Sum P(5) = 6.4e-09
Identities = 17/63 (26%), Positives = 36/63 (57%)
Query: 780 TLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHG--SSRTKDPCELAKFDVVITTYSIVS 837
+LVVCP ++ W +E+ K SK L+ L Y G + R + ++ + ++++ +Y +V
Sbjct: 1322 SLVVCPPTLTGHWVDEV-GKFCSKEYLNPLHYTGPPTERARLQYQVKRHNLIVASYDVVR 1380
Query: 838 MEV 840
++
Sbjct: 1381 NDI 1383
Score = 53 (23.7 bits), Expect = 6.4e-09, Sum P(5) = 6.4e-09
Identities = 18/65 (27%), Positives = 32/65 (49%)
Query: 422 EAVGRNSSYHDGCNSFPFKDSGQ--SFIGLSPSLLSQNQVVHAKEEHEDLILESKRARFC 479
+AV N +D + P + + + + P+ S+ V +A EE + LES FC
Sbjct: 225 DAVEANEKSNDSTDGEPEEKRRKVANVVINQPATDSKTLVENASEEANEWPLES----FC 280
Query: 480 QEICD 484
+E+C+
Sbjct: 281 EEVCN 285
Score = 37 (18.1 bits), Expect = 6.4e-09, Sum P(5) = 6.4e-09
Identities = 15/58 (25%), Positives = 26/58 (44%)
Query: 64 QDVGSHSNLQLQSG---FKGDMRDIATYPLYGLEI---SGAESGGLGDSSSQLEPTEQ 115
Q+ GS S ++ + D DI +G + +GAE D S +++P E+
Sbjct: 84 QEPGSESPMEDSPSTDRLRFDRFDICRLLKHGASLLGSAGAEFEVQDDKSGEIDPKER 141
Score = 37 (18.1 bits), Expect = 0.00079, Sum P(5) = 0.00079
Identities = 13/43 (30%), Positives = 23/43 (53%)
Query: 702 TISTIALILKERPPSFRTEDDNKRQ---LETLN--LDEEDNGI 739
T+ T+ + L++ P DDN +Q +E L +++ D GI
Sbjct: 1131 TMETMNIFLEQVLPWLGAIDDNTKQEGAIEALACVMEQLDVGI 1173
>UNIPROTKB|F1NS62 [details] [associations]
symbol:CHD1L "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005886 "plasma membrane"
evidence=IEA] [GO:0006338 "chromatin remodeling" evidence=IEA]
[GO:0006974 "response to DNA damage stimulus" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR002464
Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690 PROSITE:PS51194
SMART:SM00490 GO:GO:0005886 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0003677 GO:GO:0006974 GO:GO:0006338
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
OMA:TCQTIAL GeneTree:ENSGT00670000098110 EMBL:AADN02037964
EMBL:AADN02037962 EMBL:AADN02037963 IPI:IPI00573125
Ensembl:ENSGALT00000024254 Uniprot:F1NS62
Length = 895
Score = 117 (46.2 bits), Expect = 6.9e-09, Sum P(3) = 6.9e-09
Identities = 32/100 (32%), Positives = 48/100 (48%)
Query: 907 WFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYD--PF 964
W +V+DEA +KN + + L L+GTPIQN++ +LYS F+ D P
Sbjct: 168 WAALVVDEAHRLKNQNSLLYETLTELPVGFSLLLTGTPIQNSLQELYSLLSFIEPDIFPR 227
Query: 965 AVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGE 1004
K F + + K K+L +L+ +LRR K E
Sbjct: 228 KQVKEFVEYYQA-VEKESEPA-KELHNLLQPFLLRRVKSE 265
Score = 78 (32.5 bits), Expect = 6.9e-09, Sum P(3) = 6.9e-09
Identities = 19/50 (38%), Positives = 28/50 (56%)
Query: 661 GVLAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALIL 710
G+ + L +Q ++W+VQ C IL D+ GLGKT TI+L+L
Sbjct: 40 GLTGIKLRPYQLDGVNWLVQCYQVQHGC---ILGDEMGLGKTCQTISLLL 86
Score = 76 (31.8 bits), Expect = 6.9e-09, Sum P(3) = 6.9e-09
Identities = 22/61 (36%), Positives = 32/61 (52%)
Query: 780 TLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPC-----ELAKFDVVITTYS 834
+L++CP SVL W EEL + G LS + Y G+ + E + F V++TTY
Sbjct: 98 SLILCPLSVLSNWKEELER--FAPG-LSFVTYVGNKEERYKLQQNLKEQSHFRVLLTTYE 154
Query: 835 I 835
I
Sbjct: 155 I 155
>UNIPROTKB|F1MFS2 [details] [associations]
symbol:CHD1L "Chromodomain-helicase-DNA-binding protein
1-like" species:9913 "Bos taurus" [GO:0006974 "response to DNA
damage stimulus" evidence=IEA] [GO:0006338 "chromatin remodeling"
evidence=IEA] [GO:0005886 "plasma membrane" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR002464 Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690
PROSITE:PS51194 SMART:SM00490 GO:GO:0005886 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0003677 GO:GO:0006974
GO:GO:0006338 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR002589 PROSITE:PS51154 GO:GO:0008026 IPI:IPI00710168
OMA:TCQTIAL GeneTree:ENSGT00670000098110 EMBL:DAAA02007335
Ensembl:ENSBTAT00000027762 Uniprot:F1MFS2
Length = 896
Score = 105 (42.0 bits), Expect = 7.8e-09, Sum P(3) = 7.8e-09
Identities = 30/100 (30%), Positives = 49/100 (49%)
Query: 907 WFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAV 966
W +V+DEA +KN + + + L+GTPIQN++ +LYS F+ D F+
Sbjct: 170 WSVLVVDEAHRLKNQSSLLHKTLSEFSVVFSLLLTGTPIQNSLQELYSLLSFVEPDLFSK 229
Query: 967 --YKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGE 1004
+ F + I K + +L +L+ +LRR K E
Sbjct: 230 EQVEDFVQRYQ-DIEKES-ESASELYKLLQPFLLRRVKAE 267
Score = 88 (36.0 bits), Expect = 7.8e-09, Sum P(3) = 7.8e-09
Identities = 26/75 (34%), Positives = 37/75 (49%)
Query: 644 VAMQGISQ---PNAEASAPD----GVLAVPLLRHQRIALSWMVQKETSSLHCSGG-ILAD 695
+A+Q S+ P A D G+ + L +Q ++W+ Q HC G IL D
Sbjct: 18 LALQSKSRAEAPRARVQEQDLRQWGLTGIHLRPYQLQGVNWLAQ----CFHCQNGCILGD 73
Query: 696 DQGLGKTISTIALIL 710
+ GLGKT TIAL +
Sbjct: 74 EMGLGKTCQTIALFI 88
Score = 78 (32.5 bits), Expect = 7.8e-09, Sum P(3) = 7.8e-09
Identities = 23/61 (37%), Positives = 34/61 (55%)
Query: 781 LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPC---EL---AKFDVVITTYS 834
L++CP SVL W EE+ + G LS + Y G + K C +L ++F V++TTY
Sbjct: 101 LILCPLSVLSNWKEEMER--FAPG-LSCVTYAGD-KDKRACLQQDLKQESRFHVLLTTYE 156
Query: 835 I 835
I
Sbjct: 157 I 157
>UNIPROTKB|Q3B7N1 [details] [associations]
symbol:CHD1L "Chromodomain-helicase-DNA-binding protein
1-like" species:9913 "Bos taurus" [GO:0006200 "ATP catabolic
process" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0006974 "response to DNA damage stimulus" evidence=ISS]
[GO:0016887 "ATPase activity" evidence=ISS] [GO:0006338 "chromatin
remodeling" evidence=ISS] [GO:0000166 "nucleotide binding"
evidence=ISS] [GO:0006281 "DNA repair" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR002464
Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0000166
GO:GO:0003677 GO:GO:0006281 GO:GO:0006974 GO:GO:0016887
GO:GO:0006338 HSSP:Q97XQ5 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR002589 PROSITE:PS51154
GO:GO:0008026 EMBL:BC107534 IPI:IPI00710168 RefSeq:NP_001032909.1
UniGene:Bt.18335 ProteinModelPortal:Q3B7N1 PRIDE:Q3B7N1
GeneID:524787 KEGG:bta:524787 CTD:9557 HOGENOM:HOG000030789
HOVERGEN:HBG077542 InParanoid:Q3B7N1 OrthoDB:EOG4SXNBV
NextBio:20874039 Uniprot:Q3B7N1
Length = 897
Score = 105 (42.0 bits), Expect = 7.8e-09, Sum P(3) = 7.8e-09
Identities = 30/100 (30%), Positives = 49/100 (49%)
Query: 907 WFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAV 966
W +V+DEA +KN + + + L+GTPIQN++ +LYS F+ D F+
Sbjct: 170 WSVLVVDEAHRLKNQSSLLHKTLSEFSVVFSLLLTGTPIQNSLQELYSLLSFVEPDLFSK 229
Query: 967 --YKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGE 1004
+ F + I K + +L +L+ +LRR K E
Sbjct: 230 EQVEDFVQRYQ-DIEKES-ESASELYKLLQPFLLRRVKAE 267
Score = 88 (36.0 bits), Expect = 7.8e-09, Sum P(3) = 7.8e-09
Identities = 26/75 (34%), Positives = 37/75 (49%)
Query: 644 VAMQGISQ---PNAEASAPD----GVLAVPLLRHQRIALSWMVQKETSSLHCSGG-ILAD 695
+A+Q S+ P A D G+ + L +Q ++W+ Q HC G IL D
Sbjct: 18 LALQSKSRAEAPRARVQEQDLRQWGLTGIHLRPYQLQGVNWLAQ----CFHCQNGCILGD 73
Query: 696 DQGLGKTISTIALIL 710
+ GLGKT TIAL +
Sbjct: 74 EMGLGKTCQTIALFI 88
Score = 78 (32.5 bits), Expect = 7.8e-09, Sum P(3) = 7.8e-09
Identities = 23/61 (37%), Positives = 34/61 (55%)
Query: 781 LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPC---EL---AKFDVVITTYS 834
L++CP SVL W EE+ + G LS + Y G + K C +L ++F V++TTY
Sbjct: 101 LILCPLSVLSNWKEEMER--FAPG-LSCVTYAGD-KDKRACLQQDLKQESRFHVLLTTYE 156
Query: 835 I 835
I
Sbjct: 157 I 157
>FB|FBgn0022787 [details] [associations]
symbol:Hel89B "Helicase 89B" species:7227 "Drosophila
melanogaster" [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=ISS] [GO:0004386 "helicase activity" evidence=NAS]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0019730 "antimicrobial humoral response"
evidence=IMP] [GO:0006963 "positive regulation of antibacterial
peptide biosynthetic process" evidence=IMP] [GO:0042742 "defense
response to bacterium" evidence=IMP] [GO:0045087 "innate immune
response" evidence=IMP] [GO:0008063 "Toll signaling pathway"
evidence=IMP] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR016024 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 GO:GO:0003677 GO:GO:0042742 GO:GO:0045087
GO:GO:0004003 GO:GO:0019730 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008063 GO:GO:0006963
InterPro:IPR022707 Pfam:PF12054 EMBL:AF033104
ProteinModelPortal:Q71V44 SMR:Q71V44 STRING:Q71V44 PaxDb:Q71V44
PRIDE:Q71V44 FlyBase:FBgn0022787 InParanoid:Q71V44
OrthoDB:EOG4ZGMT5 ArrayExpress:Q71V44 Bgee:Q71V44 Uniprot:Q71V44
Length = 1924
Score = 122 (48.0 bits), Expect = 7.9e-09, Sum P(3) = 7.9e-09
Identities = 40/109 (36%), Positives = 56/109 (51%)
Query: 911 VLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAVYKSF 970
VLDE IKN +T+ ++A L+A R LSGTPIQN + +L+S F FL K F
Sbjct: 1482 VLDEGHIIKNGKTKSSKAIKRLKANHRLILSGTPIQNNVLELWSLFDFLMPGFLGTEKQF 1541
Query: 971 CSMIKVPI-----SKNPVK----GYKKLQAVLKTIM---LRRTKGEDCL 1007
PI +K+ K G ++A+ + ++ LRR K ED L
Sbjct: 1542 VQRFSRPILSSRDAKSSAKEQEAGVLAMEALHRQVLPFLLRRVK-EDVL 1589
Score = 95 (38.5 bits), Expect = 7.9e-09, Sum P(3) = 7.9e-09
Identities = 24/79 (30%), Positives = 42/79 (53%)
Query: 631 MKSKASDERLILQVAMQGISQPNAEASAPDGVLAVPLLRHQRIALSWMVQKETSSLHCSG 690
++++ + +R L S PN + P ++V L +Q+ ++W+ +LH
Sbjct: 1318 LQARKTRDREFLDYLFNPKSIPNYKVPVP---ISVELRCYQQAGINWLWFLNKYNLH--- 1371
Query: 691 GILADDQGLGKTISTIALI 709
GIL DD GLGKT+ TI ++
Sbjct: 1372 GILCDDMGLGKTLQTICIL 1390
Score = 64 (27.6 bits), Expect = 7.9e-09, Sum P(3) = 7.9e-09
Identities = 19/65 (29%), Positives = 34/65 (52%)
Query: 780 TLVVCPTSVLRQWAEELRNKVTSKGS-LSVLVYHGS--SRTKDPCELA-KFDVVITTYSI 835
+LV+CP ++ W E+ K +GS L L Y+G R K ++ K ++V+ +Y
Sbjct: 1407 SLVICPPTLTGHWVYEVE-KFLDQGSVLRPLHYYGFPVGREKLRSDIGTKCNLVVASYDT 1465
Query: 836 VSMEV 840
V ++
Sbjct: 1466 VRKDI 1470
>UNIPROTKB|F1NCD0 [details] [associations]
symbol:ERCC6L "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GeneTree:ENSGT00590000083118 EMBL:AADN02013166
IPI:IPI00572933 Ensembl:ENSGALT00000006172 OMA:DYKEFVW
Uniprot:F1NCD0
Length = 560
Score = 113 (44.8 bits), Expect = 8.2e-09, Sum P(3) = 8.2e-09
Identities = 33/111 (29%), Positives = 53/111 (47%)
Query: 907 WFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFL-RYDPFA 965
W ++LDEA IK + + + + AK R L+GTP+QN + +++S F F +
Sbjct: 206 WDYIILDEAHKIKCPSNKTTKCVYAIPAKHRLLLTGTPLQNNLQEMWSLFDFACQGSLLG 265
Query: 966 VYKSFCSMIKVPIS----KNPVKGYK--------KLQAVLKTIMLRRTKGE 1004
K+F + PI+ K+ G K L ++K LRRTK +
Sbjct: 266 TAKTFRMEYENPITRAREKDATVGEKALGLKISENLMTIIKPYFLRRTKDD 316
Score = 86 (35.3 bits), Expect = 8.2e-09, Sum P(3) = 8.2e-09
Identities = 20/49 (40%), Positives = 28/49 (57%)
Query: 661 GVLAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 709
G + L +HQR ++++ + GGILADD GLGKTI IA +
Sbjct: 74 GEMHAKLFQHQREGVAFLYRLHREGR--PGGILADDMGLGKTIQIIAFL 120
Score = 64 (27.6 bits), Expect = 8.2e-09, Sum P(3) = 8.2e-09
Identities = 18/60 (30%), Positives = 32/60 (53%)
Query: 781 LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCELAKFD----VVITTYSIV 836
L++ PT+++ W E + G L V +HG+S+T+ L K +VIT+Y ++
Sbjct: 133 LLIMPTTLVSSWLAEFAR--WTPG-LRVKEFHGTSKTERTRNLEKIQRKNGIVITSYQML 189
>ZFIN|ZDB-GENE-060531-56 [details] [associations]
symbol:ercc6l "excision repair cross-complementing
rodent repair deficiency, complementation group 6-like"
species:7955 "Danio rerio" [GO:0016539 "intein-mediated protein
splicing" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0000776 "kinetochore" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0051301 "cell division"
evidence=IEA] [GO:0005694 "chromosome" evidence=IEA] [GO:0007049
"cell cycle" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000775 "chromosome, centromeric region"
evidence=IEA] [GO:0007067 "mitosis" evidence=IEA] [GO:0000777
"condensed chromosome kinetochore" evidence=IEA] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR006141 InterPro:IPR011990
InterPro:IPR019734 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50005
PROSITE:PS50293 PROSITE:PS51194 SMART:SM00490
ZFIN:ZDB-GENE-060531-56 GO:GO:0005524 GO:GO:0051301 GO:GO:0007067
GO:GO:0003677 Gene3D:1.25.40.10 GO:GO:0004386 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0000777
GO:GO:0016539 CTD:54821 GeneTree:ENSGT00590000083118
OrthoDB:EOG4FR0RD EMBL:CR391924 EMBL:BX510925 EMBL:BC150168
IPI:IPI00635423 RefSeq:NP_001093563.1 UniGene:Dr.38615
ProteinModelPortal:A2BGR3 Ensembl:ENSDART00000015401
GeneID:100005291 KEGG:dre:100005291 InParanoid:A2BGR3
NextBio:20786618 Bgee:A2BGR3 Uniprot:A2BGR3
Length = 1451
Score = 121 (47.7 bits), Expect = 1.0e-08, Sum P(3) = 1.0e-08
Identities = 35/111 (31%), Positives = 56/111 (50%)
Query: 907 WFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFL-RYDPFA 965
W V+LDEA IK T+ A++ + AK R L+GTP+QN + ++++ F F +
Sbjct: 231 WDYVILDEAHKIKTSSTKTAKSAHAIPAKNRVLLTGTPVQNNLREMWALFDFACQGSLLG 290
Query: 966 VYKSFCSMIKVPIS----KNPVKGYK--------KLQAVLKTIMLRRTKGE 1004
K+F + + PI+ K+ G K L ++K LRRTK +
Sbjct: 291 TSKTFKTEYENPITRAREKDATPGEKALGLRISQNLTDIIKPYFLRRTKAD 341
Score = 82 (33.9 bits), Expect = 1.0e-08, Sum P(3) = 1.0e-08
Identities = 22/61 (36%), Positives = 34/61 (55%)
Query: 780 TLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCELAKFD----VVITTYSI 835
TL+V PTS+++ W E K T + V +HGSS+T+ L + V+ITTY +
Sbjct: 157 TLLVMPTSLIKNWVREFA-KWTP--GMRVKEFHGSSKTERNRNLERIQRKGGVIITTYQM 213
Query: 836 V 836
+
Sbjct: 214 L 214
Score = 73 (30.8 bits), Expect = 1.0e-08, Sum P(3) = 1.0e-08
Identities = 14/20 (70%), Positives = 16/20 (80%)
Query: 690 GGILADDQGLGKTISTIALI 709
GGILADD GLGKTI I+ +
Sbjct: 126 GGILADDMGLGKTIQVISFL 145
>UNIPROTKB|Q8TD26 [details] [associations]
symbol:CHD6 "Chromodomain-helicase-DNA-binding protein 6"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0005634 "nucleus" evidence=NAS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=NAS] [GO:0006338 "chromatin remodeling" evidence=NAS]
[GO:0007399 "nervous system development" evidence=NAS] [GO:0003682
"chromatin binding" evidence=NAS] InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR002464 InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271
Pfam:PF07533 PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 SMART:SM00717 Pfam:PF00385
GO:GO:0005524 GO:GO:0005634 GO:GO:0007399 GO:GO:0006355
GO:GO:0003677 GO:GO:0006351 GO:GO:0003682 GO:GO:0006338
InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR023780 PROSITE:PS00598 CleanEx:HS_CHD5 EMBL:AY034072
EMBL:AL121674 EMBL:AL031669 EMBL:AL031667 EMBL:BC021907
EMBL:BC039860 EMBL:BC040016 EMBL:AF525085 EMBL:AB037756
EMBL:AK026022 IPI:IPI00220289 IPI:IPI00395823 IPI:IPI00513717
RefSeq:NP_115597.3 UniGene:Hs.740645 UniGene:Hs.741381 PDB:2EPB
PDBsum:2EPB ProteinModelPortal:Q8TD26 SMR:Q8TD26 IntAct:Q8TD26
MINT:MINT-1197235 STRING:Q8TD26 PhosphoSite:Q8TD26 DMDM:296439466
PaxDb:Q8TD26 PRIDE:Q8TD26 Ensembl:ENST00000373222
Ensembl:ENST00000373233 Ensembl:ENST00000440647 GeneID:84181
KEGG:hsa:84181 UCSC:uc002xka.1 UCSC:uc002xkc.3 CTD:84181
GeneCards:GC20M040030 H-InvDB:HIX0015824 H-InvDB:HIX0027712
HGNC:HGNC:19057 neXtProt:NX_Q8TD26 PharmGKB:PA134974700
HOVERGEN:HBG081150 InParanoid:Q8TD26 KO:K14436 OMA:CKWATME
OrthoDB:EOG4NP72J PhylomeDB:Q8TD26 ChiTaRS:CHD6
EvolutionaryTrace:Q8TD26 GenomeRNAi:84181 NextBio:73559
ArrayExpress:Q8TD26 Bgee:Q8TD26 CleanEx:HS_CHD6
Genevestigator:Q8TD26 GermOnline:ENSG00000124177 Uniprot:Q8TD26
Length = 2715
Score = 143 (55.4 bits), Expect = 1.1e-08, Sum P(4) = 1.1e-08
Identities = 33/103 (32%), Positives = 56/103 (54%)
Query: 902 LAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRY 961
L K+ W V++DEA +KN ++ + + + L+GTP+QN++++L+S FL
Sbjct: 587 LKKIHWSCVIIDEAHRLKNRNCKLLEGLKLMALEHKVLLTGTPLQNSVEELFSLLNFLEP 646
Query: 962 DPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGE 1004
F +F ++ VK KLQ++LK +MLRR K +
Sbjct: 647 SQFPSETAFLEEFGDLKTEEQVK---KLQSILKPMMLRRLKDD 686
Score = 71 (30.1 bits), Expect = 1.1e-08, Sum P(4) = 1.1e-08
Identities = 28/100 (28%), Positives = 45/100 (45%)
Query: 760 GSSAKSFNFVEQAKGRPAAGT-LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGS--SR 816
G + +S F+ + R G L++ P S + W E R ++ +VYHGS SR
Sbjct: 491 GKTIQSITFLSEIFLRGIHGPFLIIAPLSTITNWEREFRTWT----EMNAIVYHGSQISR 546
Query: 817 T---------KD----PCE-LAKFDVVITTYSIVSMEVPK 842
+D P + KF VVITT+ ++ + P+
Sbjct: 547 QMIQQYEMVYRDAQGNPLSGVFKFHVVITTFEMILADCPE 586
Score = 65 (27.9 bits), Expect = 1.1e-08, Sum P(4) = 1.1e-08
Identities = 15/43 (34%), Positives = 25/43 (58%)
Query: 667 LLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 709
L +Q ++W++ + +C ILAD+ GLGKTI +I +
Sbjct: 461 LREYQLEGMNWLLFNWYNRKNC---ILADEMGLGKTIQSITFL 500
Score = 52 (23.4 bits), Expect = 1.1e-08, Sum P(4) = 1.1e-08
Identities = 21/79 (26%), Positives = 33/79 (41%)
Query: 43 DRVKSSPGDLSLRNLSQDELVQDVGSHSNLQLQSGFKGDMRDIATYPLY-----GLEISG 97
D SP D S Q+E ++DV SH L + + + +P G+E SG
Sbjct: 31 DYKSPSPFDCST---DQEEKIEDVASHC-LPQKDLYTAEEEAATLFPRKMTSHNGMEDSG 86
Query: 98 AESGGLGDSSSQLEPTEQK 116
G+ + EP +Q+
Sbjct: 87 GGGTGVKKKRKKKEPGDQE 105
>POMBASE|SPBC1826.01c [details] [associations]
symbol:mot1 "TATA-binding protein associated factor
Mot1 (predicted)" species:4896 "Schizosaccharomyces pombe"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IC] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=ISO]
[GO:0016887 "ATPase activity" evidence=ISO] [GO:0017025 "TBP-class
protein binding" evidence=ISO] [GO:0043234 "protein complex"
evidence=NAS] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR016024 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 PomBase:SPBC1826.01c GO:GO:0005524 GO:GO:0005634
GO:GO:0043234 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
PROSITE:PS50077 GO:GO:0006355 GO:GO:0003677 EMBL:CU329671
GenomeReviews:CU329671_GR GO:GO:0016887 GO:GO:0006366 GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
HOGENOM:HOG000210415 KO:K15192 OMA:TKQEGAI InterPro:IPR022707
Pfam:PF12054 GO:GO:0017025 EMBL:AB027981 PIR:T39739
RefSeq:NP_596080.2 ProteinModelPortal:O43065 STRING:O43065
EnsemblFungi:SPBC1826.01c.1 GeneID:2539633 KEGG:spo:SPBC1826.01c
OrthoDB:EOG44XNQZ NextBio:20800788 Uniprot:O43065
Length = 1953
Score = 146 (56.5 bits), Expect = 1.4e-08, Sum P(3) = 1.4e-08
Identities = 46/118 (38%), Positives = 59/118 (50%)
Query: 902 LAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRY 961
L K+ W VLDE IKN R ++ +A LR+ R LSGTPIQN + +L+S F FL
Sbjct: 1483 LVKIDWNYCVLDEGHVIKNARAKLTKAVKSLRSYHRLILSGTPIQNNVLELWSLFDFLMP 1542
Query: 962 DPFAVYKSFCSMIKVPI---------SKNPVKGYKKLQAVLKTI---MLRRTKGEDCL 1007
K+F PI SK +G L+A+ K + MLRR K ED L
Sbjct: 1543 GFLGTEKTFQERFVRPIAASRDAKSSSKERERGTLALEAIHKQVLPFMLRRLK-EDVL 1599
Score = 90 (36.7 bits), Expect = 2.2e-08, Sum P(3) = 2.2e-08
Identities = 32/109 (29%), Positives = 51/109 (46%)
Query: 735 EDNGIQVNGLDLVKQESDYCRVVPNGSSAKSFNFVEQAKGRPA-AGTLVVCPTSVLRQWA 793
E +GI + + L K C V + + + F E + A +L+VCP+++ W
Sbjct: 1376 ELHGILCDDMGLGKTLQTICIVASDHYNRQKL-FEESGSPKFAHVPSLIVCPSTLAGHWQ 1434
Query: 794 EELRNKVTSKGSLSVLVYHG--SSRTKDPCELAKFDVVITTYSIVSMEV 840
+EL T L V Y G + R K ++ K DVV+T+Y I +V
Sbjct: 1435 QELS---TYAPFLKVSAYVGPPAERAKIRSKMKKSDVVVTSYDICRNDV 1480
Score = 89 (36.4 bits), Expect = 1.4e-08, Sum P(3) = 1.4e-08
Identities = 23/75 (30%), Positives = 39/75 (52%)
Query: 638 ERLILQVAMQGISQPNAEASAPDGVLAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQ 697
ER L+ Q ++ EA + ++ L ++Q+ ++W+ LH GIL DD
Sbjct: 1332 ERKFLE---QMLNPSKVEAFSIPVPISADLRKYQQEGVNWLAFLNKYELH---GILCDDM 1385
Query: 698 GLGKTISTIALILKE 712
GLGKT+ TI ++ +
Sbjct: 1386 GLGKTLQTICIVASD 1400
Score = 43 (20.2 bits), Expect = 1.4e-08, Sum P(3) = 1.4e-08
Identities = 33/145 (22%), Positives = 58/145 (40%)
Query: 442 SGQSFIGLSPSLLSQNQVVHAKEEHEDLILESKRARFCQEICDGSSSRSPIDGRHLSLNL 501
S QS + +S +L S ++V +K E E L S ++ + I D + L+ L
Sbjct: 113 SSQSQVVVSSNLTSNSEV--SKLEEERLSTRS-HSQEIKPIVDFGPDEET--AKELNTEL 167
Query: 502 NG-------SRQYFPYAQPSTLNKKELDGVKEDMEAEIKTRSMASHLLKLSPESIQSNSS 554
G S + F A KK L D + + + ++H L+ +++S
Sbjct: 168 KGKFENSLLSFESFDIANVLKAGKKLLGSASRDYD--VNPANYSTHYLQ-QLSNLKSRLD 224
Query: 555 DCKSHVDDEPDICILEDISQPARSN 579
++DD I+ D+ SN
Sbjct: 225 LAGEYLDDS----IMNDLGDNVGSN 245
Score = 40 (19.1 bits), Expect = 2.2e-08, Sum P(3) = 2.2e-08
Identities = 15/59 (25%), Positives = 23/59 (38%)
Query: 233 NLCTYVDVPYTDAEVSSHNVASTDSTICHGSEIISDDDYYSAMPCYINTGDTIFGDPSS 291
NLC YV + T+ + H+ H S SDD+ ++ D + D S
Sbjct: 1045 NLCAYVCMDTTETPIF-HDSGKNGILSLH-SIGTSDDNDEQVSGKLVDDSDDVSNDRKS 1101
Score = 40 (19.1 bits), Expect = 1.1e-07, Sum P(4) = 1.1e-07
Identities = 7/18 (38%), Positives = 11/18 (61%)
Query: 230 PEGNLCTYVDVPYTDAEV 247
P+G+ C VD P + +V
Sbjct: 762 PKGSFCFSVDEPMLNGDV 779
Score = 39 (18.8 bits), Expect = 5.5e-08, Sum P(4) = 5.5e-08
Identities = 8/22 (36%), Positives = 12/22 (54%)
Query: 716 SFRTEDDNKRQLETLNLDEEDN 737
S T DDN Q+ +D+ D+
Sbjct: 1073 SIGTSDDNDEQVSGKLVDDSDD 1094
>ZFIN|ZDB-GENE-021025-1 [details] [associations]
symbol:btaf1 "BTAF1 RNA polymerase II, B-TFIID
transcription factor-associated" species:7955 "Danio rerio"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] InterPro:IPR000330
InterPro:IPR000357 InterPro:IPR001650 InterPro:IPR016024
Pfam:PF00176 Pfam:PF00271 Pfam:PF02985 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-021025-1 GO:GO:0005524 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003677 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR022707
Pfam:PF12054 GeneTree:ENSGT00630000089754 EMBL:BX530089
EMBL:CR792417 IPI:IPI00929996 Ensembl:ENSDART00000084327
ArrayExpress:F1Q603 Bgee:F1Q603 Uniprot:F1Q603
Length = 1861
Score = 112 (44.5 bits), Expect = 1.6e-08, Sum P(4) = 1.6e-08
Identities = 27/68 (39%), Positives = 38/68 (55%)
Query: 911 VLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAVYKSF 970
+LDE IKN +T++++A L A R LSGTPIQN + +L+S F FL + F
Sbjct: 1412 ILDEGHVIKNGKTKLSKAIKQLTANYRLILSGTPIQNNVLELWSLFDFLMPGFLGTERQF 1471
Query: 971 CSMIKVPI 978
+ PI
Sbjct: 1472 AARYGKPI 1479
Score = 94 (38.1 bits), Expect = 1.6e-08, Sum P(4) = 1.6e-08
Identities = 27/91 (29%), Positives = 43/91 (47%)
Query: 619 GYPGVPLTGLGGMKSKASDERLILQVAMQGISQPNAEASAPDGVLAVPLLRHQRIALSWM 678
G P P ++ KA ER L+ + G N + P + L ++Q+ ++W+
Sbjct: 1232 GIPDPPSMSEDLIRQKAR-ERHFLEQLLDGRKLENYKIPVP---IKAELRKYQQDGVNWL 1287
Query: 679 VQKETSSLHCSGGILADDQGLGKTISTIALI 709
LH GIL DD GLGKT+ +I ++
Sbjct: 1288 AFLNKYKLH---GILCDDMGLGKTLQSICIL 1315
Score = 79 (32.9 bits), Expect = 1.6e-08, Sum P(4) = 1.6e-08
Identities = 18/63 (28%), Positives = 36/63 (57%)
Query: 780 TLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHG--SSRTKDPCELAKFDVVITTYSIVS 837
++VVCP ++ W +E+ K SK L+ L Y G + R + ++ K ++++ +Y +V
Sbjct: 1339 SIVVCPPTLTGHWVDEV-GKFCSKEFLNPLHYTGPPTERARLQHQVKKHNLIVASYDVVR 1397
Query: 838 MEV 840
+V
Sbjct: 1398 NDV 1400
Score = 39 (18.8 bits), Expect = 1.6e-08, Sum P(4) = 1.6e-08
Identities = 13/60 (21%), Positives = 24/60 (40%)
Query: 436 SFPFKDSGQSFIGLSPSLLSQNQVVHAKEEHEDLILESKRARFCQEICDGSSSRSPIDGR 495
S P K++ Q +IG + ++ + L+ C ICD + S ++ R
Sbjct: 655 SVPVKETVQEYIGGAETVTEEPATRDYVVTRARLMAAKLLGALCSCICDPRLNSSSLELR 714
>UNIPROTKB|D4A4J2 [details] [associations]
symbol:Smarca2 "Protein Smarca2" species:10116 "Rattus
norvegicus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR006576
InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271 Pfam:PF07533
Pfam:PF08880 PROSITE:PS51194 SMART:SM00490 SMART:SM00592
SMART:SM00951 RGD:1302988 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
IPI:IPI00777186 Ensembl:ENSRNOT00000016283 ArrayExpress:D4A4J2
Uniprot:D4A4J2
Length = 1506
Score = 113 (44.8 bits), Expect = 1.6e-08, Sum P(4) = 1.6e-08
Identities = 35/116 (30%), Positives = 55/116 (47%)
Query: 902 LAKVGWFRVVLDEAQSIKNHR---TQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRF 958
LAK+ W +++DE +KNH TQV + A RR L+GTP+QN + +L++ F
Sbjct: 847 LAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYV--APRRILLTGTPLQNKLPELWALLNF 904
Query: 959 LRYDPFAVYKSFCSMIKVPIS----------KNPVKGYKKLQAVLKTIMLRRTKGE 1004
L F +F P + + + ++L VL+ +LRR K E
Sbjct: 905 LLPTIFKSCSTFEQWFNAPFAMTGERVDLNEEETILIIRRLHKVLRPFLLRRLKKE 960
Score = 98 (39.6 bits), Expect = 1.6e-08, Sum P(4) = 1.6e-08
Identities = 23/43 (53%), Positives = 30/43 (69%)
Query: 668 LRHQRI-ALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 709
L+H ++ L WMV ++L+ GILAD+ GLGKTI TIALI
Sbjct: 731 LKHYQLQGLEWMVSLYNNNLN---GILADEMGLGKTIQTIALI 770
Score = 57 (25.1 bits), Expect = 1.6e-08, Sum P(4) = 1.6e-08
Identities = 16/57 (28%), Positives = 24/57 (42%)
Query: 781 LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDP-CELAKFDVVITTYSIV 836
L++ P S L W E S +S R+ P KF+V++TTY +
Sbjct: 784 LIIVPLSTLSNWTYEFDKWAPSVVKISYKGTPAMRRSLVPQLRSGKFNVLLTTYEYI 840
Score = 52 (23.4 bits), Expect = 1.6e-08, Sum P(4) = 1.6e-08
Identities = 19/75 (25%), Positives = 32/75 (42%)
Query: 508 FPYAQPSTLNKKELDGVKEDMEAEIKTRSMASHLLKLSPESIQSNSSDCKSHVDD-EPDI 566
+ A S + E D +ED E E +R + L P S + + D K ++ + D+
Sbjct: 634 YEVAPRSDSEESESDYEEEDEEEE-SSRQETEEKILLDPNSEEVSEKDAKQIIETAKQDV 692
Query: 567 CILEDISQPARSNQS 581
+ AR +QS
Sbjct: 693 DDEYSMQYSARGSQS 707
>MGI|MGI:99603 [details] [associations]
symbol:Smarca2 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily a, member 2"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000790 "nuclear chromatin" evidence=ISO]
[GO:0001105 "RNA polymerase II transcription coactivator activity"
evidence=ISO] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO;IDA] [GO:0006325 "chromatin organization"
evidence=TAS] [GO:0006334 "nucleosome assembly" evidence=TAS]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0007399 "nervous system development"
evidence=IEA] [GO:0008285 "negative regulation of cell
proliferation" evidence=IMP] [GO:0016514 "SWI/SNF complex"
evidence=ISO;TAS] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0016817 "hydrolase activity, acting on acid anhydrides"
evidence=IEA] [GO:0016818 "hydrolase activity, acting on acid
anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0030308 "negative regulation of cell growth" evidence=ISO]
[GO:0035887 "aortic smooth muscle cell differentiation"
evidence=IMP] [GO:0044212 "transcription regulatory region DNA
binding" evidence=ISO] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=ISO] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=ISO]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=ISO] [GO:0071564 "npBAF complex"
evidence=IDA] [GO:0071565 "nBAF complex" evidence=IDA] [GO:0071778
"WINAC complex" evidence=ISO] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 InterPro:IPR006576 InterPro:IPR014978
Pfam:PF00176 Pfam:PF00271 Pfam:PF00439 Pfam:PF07533 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00490
SMART:SM00592 SMART:SM00951 MGI:MGI:99603 GO:GO:0005524
GO:GO:0045892 GO:GO:0008285 GO:GO:0007399 GO:GO:0030308
GO:GO:0045944 GO:GO:0044212 GO:GO:0045111 GO:GO:0000790
GO:GO:0071564 GO:GO:0016514 GO:GO:0071565 GO:GO:0004386
GO:GO:0001105 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006334 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 GO:GO:0071778 KO:K11647
ChiTaRS:SMARCA2 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
CTD:6595 HOGENOM:HOG000172363 HOVERGEN:HBG056636 GO:GO:0035887
EMBL:BC075641 IPI:IPI01018407 RefSeq:NP_035546.2 UniGene:Mm.313303
ProteinModelPortal:Q6DIC0 SMR:Q6DIC0 DIP:DIP-48888N STRING:Q6DIC0
PhosphoSite:Q6DIC0 PaxDb:Q6DIC0 PRIDE:Q6DIC0 GeneID:67155
KEGG:mmu:67155 UCSC:uc008hbn.1 InParanoid:Q6DIC0 OrthoDB:EOG418BMJ
NextBio:323746 Bgee:Q6DIC0 Genevestigator:Q6DIC0 Uniprot:Q6DIC0
Length = 1577
Score = 113 (44.8 bits), Expect = 2.0e-08, Sum P(4) = 2.0e-08
Identities = 35/116 (30%), Positives = 55/116 (47%)
Query: 902 LAKVGWFRVVLDEAQSIKNHR---TQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRF 958
LAK+ W +++DE +KNH TQV + A RR L+GTP+QN + +L++ F
Sbjct: 845 LAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYV--APRRILLTGTPLQNKLPELWALLNF 902
Query: 959 LRYDPFAVYKSFCSMIKVPIS----------KNPVKGYKKLQAVLKTIMLRRTKGE 1004
L F +F P + + + ++L VL+ +LRR K E
Sbjct: 903 LLPTIFKSCSTFEQWFNAPFAMTGERVDLNEEETILIIRRLHKVLRPFLLRRLKKE 958
Score = 98 (39.6 bits), Expect = 2.0e-08, Sum P(4) = 2.0e-08
Identities = 23/43 (53%), Positives = 30/43 (69%)
Query: 668 LRHQRI-ALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 709
L+H ++ L WMV ++L+ GILAD+ GLGKTI TIALI
Sbjct: 729 LKHYQLQGLEWMVSLYNNNLN---GILADEMGLGKTIQTIALI 768
Score = 57 (25.1 bits), Expect = 2.0e-08, Sum P(4) = 2.0e-08
Identities = 16/57 (28%), Positives = 24/57 (42%)
Query: 781 LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDP-CELAKFDVVITTYSIV 836
L++ P S L W E S +S R+ P KF+V++TTY +
Sbjct: 782 LIIVPLSTLSNWTYEFDKWAPSVVKISYKGTPAMRRSLVPQLRSGKFNVLLTTYEYI 838
Score = 52 (23.4 bits), Expect = 2.0e-08, Sum P(4) = 2.0e-08
Identities = 19/75 (25%), Positives = 32/75 (42%)
Query: 508 FPYAQPSTLNKKELDGVKEDMEAEIKTRSMASHLLKLSPESIQSNSSDCKSHVDD-EPDI 566
+ A S + E D +ED E E +R + L P S + + D K ++ + D+
Sbjct: 632 YEVAPRSDSEESESDYEEEDEEEE-SSRQETEEKILLDPNSEEVSEKDAKQIIETAKQDV 690
Query: 567 CILEDISQPARSNQS 581
+ AR +QS
Sbjct: 691 DDEYSMQYSARGSQS 705
>RGD|1311935 [details] [associations]
symbol:Chd1l "chromodomain helicase DNA binding protein 1-like"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=ISO] [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISO] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0005886 "plasma membrane"
evidence=ISO] [GO:0006200 "ATP catabolic process" evidence=ISO]
[GO:0006338 "chromatin remodeling" evidence=ISO] [GO:0006974
"response to DNA damage stimulus" evidence=ISO] [GO:0016887 "ATPase
activity" evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 RGD:1311935 GO:GO:0005886
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0003677
GO:GO:0006974 GO:GO:0016887 GO:GO:0006338 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR002589
PROSITE:PS51154 OrthoDB:EOG4SXNBV GeneTree:ENSGT00670000098110
IPI:IPI00560655 Ensembl:ENSRNOT00000043937 UCSC:RGD:1311935
ArrayExpress:D4ACG6 Uniprot:D4ACG6
Length = 903
Score = 107 (42.7 bits), Expect = 2.0e-08, Sum P(3) = 2.0e-08
Identities = 31/105 (29%), Positives = 48/105 (45%)
Query: 902 LAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRY 961
L W + +DEA +KN + + R R L+GTPIQN++ +LYS +
Sbjct: 157 LKSFSWSVLAVDEAHRLKNQSSLLHRTLSEFSVVFRLLLTGTPIQNSLQELYSLLSVVEP 216
Query: 962 DPFA--VYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGE 1004
D F + F + I K K +L +L+ +LRR K +
Sbjct: 217 DLFCREQVEDFVQCYQ-DIEKES-KSASELHRLLRPFLLRRVKAQ 259
Score = 82 (33.9 bits), Expect = 2.0e-08, Sum P(3) = 2.0e-08
Identities = 20/51 (39%), Positives = 29/51 (56%)
Query: 661 GVLAVPLLRHQRIALSWMVQKETSSLHCSGG-ILADDQGLGKTISTIALIL 710
G+ + L +Q ++W+VQ H G IL D+ GLGKT TIAL++
Sbjct: 34 GLTGIRLRSYQLEGVNWLVQ----CFHGQNGCILGDEMGLGKTCQTIALLI 80
Score = 78 (32.5 bits), Expect = 2.0e-08, Sum P(3) = 2.0e-08
Identities = 22/60 (36%), Positives = 32/60 (53%)
Query: 781 LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSS-----RTKDPCELAKFDVVITTYSI 835
L++CP SVL W EE+ + G LS + Y G R +D + + F V++TTY I
Sbjct: 93 LILCPLSVLSNWKEEMER--FAPG-LSCVTYTGDKEERARRQQDLRQESGFHVLLTTYEI 149
>UNIPROTKB|A6QQR4 [details] [associations]
symbol:ERCC6L "DNA excision repair protein ERCC-6-like"
species:9913 "Bos taurus" [GO:0000777 "condensed chromosome
kinetochore" evidence=IEA] [GO:0051301 "cell division"
evidence=IEA] [GO:0007067 "mitosis" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR011990
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50005 PROSITE:PS50293
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0051301
GO:GO:0007067 GO:GO:0003677 Gene3D:1.25.40.10 GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0000777 EMBL:BC149963 EMBL:BT026201 IPI:IPI00694211
RefSeq:NP_001096000.1 UniGene:Bt.74729 ProteinModelPortal:A6QQR4
STRING:A6QQR4 PRIDE:A6QQR4 Ensembl:ENSBTAT00000007362 GeneID:782916
KEGG:bta:782916 CTD:54821 GeneTree:ENSGT00590000083118
HOGENOM:HOG000074172 HOVERGEN:HBG107854 InParanoid:A6QQR4
OMA:TKNGDLE OrthoDB:EOG4FR0RD NextBio:20925771 ArrayExpress:A6QQR4
Uniprot:A6QQR4
Length = 1242
Score = 122 (48.0 bits), Expect = 2.0e-08, Sum P(3) = 2.0e-08
Identities = 38/111 (34%), Positives = 55/111 (49%)
Query: 907 WFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFL-RYDPFA 965
W V+LDEA IK+ T+ A + A R L+GTPIQN + +L+S F F +
Sbjct: 222 WDYVILDEAHKIKSSSTKSAICARAIPASNRILLTGTPIQNNLQELWSLFDFACQGSLLG 281
Query: 966 VYKSFCSMIKVPISKNPVK---------GYK---KLQAVLKTIMLRRTKGE 1004
++F + PI++ K G+K L A++K LRRTK E
Sbjct: 282 TLRTFKMEYENPITRAREKDATPGEKALGFKISENLMAIIKPYFLRRTKEE 332
Score = 75 (31.5 bits), Expect = 2.0e-08, Sum P(3) = 2.0e-08
Identities = 20/60 (33%), Positives = 34/60 (56%)
Query: 781 LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSS---RTKDPCELAKFD-VVITTYSIV 836
L++ PTS++ W LR V + V +HG S RT++ C + + + V+ITTY ++
Sbjct: 149 LLIMPTSLISTW---LREFVKWTPGMRVKTFHGPSKDERTRNLCRIQQRNGVIITTYQML 205
Score = 74 (31.1 bits), Expect = 2.0e-08, Sum P(3) = 2.0e-08
Identities = 14/20 (70%), Positives = 16/20 (80%)
Query: 690 GGILADDQGLGKTISTIALI 709
GGILADD GLGKT+ IA +
Sbjct: 117 GGILADDMGLGKTVQIIAFL 136
>UNIPROTKB|F1S594 [details] [associations]
symbol:LOC100622433 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 GO:GO:0005524 GO:GO:0003677 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10
SUPFAM:SSF47370 PROSITE:PS00633 InterPro:IPR018359
GeneTree:ENSGT00550000074659 EMBL:FP102365
Ensembl:ENSSSCT00000014884 OMA:KSSGHER Uniprot:F1S594
Length = 866
Score = 114 (45.2 bits), Expect = 2.0e-08, Sum P(3) = 2.0e-08
Identities = 36/116 (31%), Positives = 54/116 (46%)
Query: 902 LAKVGWFRVVLDEAQSIKNHR---TQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRF 958
LAK+ W +++DE +KNH TQV + A RR L+GTP+QN + +L++ F
Sbjct: 122 LAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYV--APRRLLLTGTPLQNKLPELWALLNF 179
Query: 959 LRYDPFAVYKSFCSMIKVPISKNPVKG----------YKKLQAVLKTIMLRRTKGE 1004
L F +F P + K ++L VL+ +LRR K E
Sbjct: 180 LLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEETILIIRRLHKVLRPFLLRRLKKE 235
Score = 92 (37.4 bits), Expect = 2.0e-08, Sum P(3) = 2.0e-08
Identities = 22/43 (51%), Positives = 29/43 (67%)
Query: 667 LLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 709
L ++Q L W+V ++L+ GILAD+ GLGKTI TIALI
Sbjct: 6 LKQYQIKGLEWLVSLYNNNLN---GILADEMGLGKTIQTIALI 45
Score = 60 (26.2 bits), Expect = 2.0e-08, Sum P(3) = 2.0e-08
Identities = 17/57 (29%), Positives = 25/57 (43%)
Query: 781 LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDP-CELAKFDVVITTYSIV 836
L++ P S L WA E S +S + R P KF+V++TTY +
Sbjct: 59 LIIVPLSTLSNWAYEFDKWAPSVVKVSYKGSPAARRAFVPQLRSGKFNVLLTTYEYI 115
>UNIPROTKB|F1Q2U2 [details] [associations]
symbol:CHD1L "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR002464 Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003677
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR002589
PROSITE:PS51154 GO:GO:0008026 OMA:TCQTIAL
GeneTree:ENSGT00670000098110 EMBL:AAEX03011032
Ensembl:ENSCAFT00000017488 Uniprot:F1Q2U2
Length = 898
Score = 103 (41.3 bits), Expect = 2.0e-08, Sum P(3) = 2.0e-08
Identities = 30/100 (30%), Positives = 47/100 (47%)
Query: 907 WFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAV 966
W +V+DEA +KN + + + L+GTPIQN++ +LYS F+ D F
Sbjct: 170 WSVLVVDEAHRLKNQNSLLHKTLLEFSVVFSLLLTGTPIQNSLQELYSLLSFVEPDLFPK 229
Query: 967 YK--SFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGE 1004
+ F + I K +L +L+ +LRR K E
Sbjct: 230 EQVGDFVQRYQ-DIEKESDSA-SELHKLLQPFLLRRVKAE 267
Score = 84 (34.6 bits), Expect = 2.0e-08, Sum P(3) = 2.0e-08
Identities = 19/51 (37%), Positives = 28/51 (54%)
Query: 661 GVLAVPLLRHQRIALSWMVQKETSSLHCSGG-ILADDQGLGKTISTIALIL 710
G+ + L +Q ++W+ + HC G IL D+ GLGKT TIAL +
Sbjct: 42 GLTGIRLRSYQLEGVNWLAR----CFHCQNGCILGDEMGLGKTCQTIALFI 88
Score = 80 (33.2 bits), Expect = 2.0e-08, Sum P(3) = 2.0e-08
Identities = 21/60 (35%), Positives = 33/60 (55%)
Query: 781 LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTK-----DPCELAKFDVVITTYSI 835
L++CP SVL W EE+ + G LS ++Y G + D + ++F V++TTY I
Sbjct: 101 LILCPLSVLSNWTEEMER--FAPG-LSCVMYAGDKEERARLQQDLKQESRFHVLLTTYEI 157
>GENEDB_PFALCIPARUM|PFB0730w [details] [associations]
symbol:PFB0730w "DNA helicase, putative"
species:5833 "Plasmodium falciparum" [GO:0003678 "DNA helicase
activity" evidence=ISS] [GO:0006338 "chromatin remodeling"
evidence=ISS] [GO:0016514 "SWI/SNF complex" evidence=ISS]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003677
GO:GO:0006338 GO:GO:0016514 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0003678 KO:K11647 EMBL:AE001362 OMA:NENMNMS
PIR:F71607 RefSeq:XP_001349665.1 ProteinModelPortal:O96239
EnsemblProtists:PFB0730w:mRNA GeneID:812747 KEGG:pfa:PFB0730w
EuPathDB:PlasmoDB:PF3D7_0216000 Uniprot:O96239
Length = 1997
Score = 103 (41.3 bits), Expect = 2.0e-08, Sum P(3) = 2.0e-08
Identities = 25/56 (44%), Positives = 35/56 (62%)
Query: 659 PDGVLAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI--LKE 712
P ++ L+++Q L W+V ++LH GILAD+ GLGKTI TI+L LKE
Sbjct: 876 PSILIGGELMKYQLEGLEWLVSLYNNNLH---GILADEMGLGKTIQTISLFAYLKE 928
Score = 102 (41.0 bits), Expect = 2.0e-08, Sum P(3) = 2.0e-08
Identities = 20/58 (34%), Positives = 35/58 (60%)
Query: 902 LAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFL 959
L K+ W +V+DE +KN++++ ++K R L+GTP+QN + +L+S FL
Sbjct: 1001 LMKISWNYIVVDEGHRMKNNKSRFHVFLSEFKSKYRILLTGTPLQNNLSELWSLLNFL 1058
Score = 73 (30.8 bits), Expect = 2.0e-08, Sum P(3) = 2.0e-08
Identities = 23/80 (28%), Positives = 38/80 (47%)
Query: 766 FNFVEQAKGRPAAGTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCELAK 825
F ++++ K L++ P S L W E N+ SL+V+ Y G+ + +AK
Sbjct: 923 FAYLKEFKNNINVKNLIIVPLSTLPNWISEF-NRWCP--SLNVITYRGNKLERK--HIAK 977
Query: 826 ------FDVVITTYSIVSME 839
FD+ ITT+ +V E
Sbjct: 978 KLLEQTFDICITTFDLVIKE 997
>UNIPROTKB|O96239 [details] [associations]
symbol:PFB0730w "DEAD/DEAH box helicase, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0003678 "DNA helicase
activity" evidence=ISS] [GO:0006338 "chromatin remodeling"
evidence=ISS] [GO:0016514 "SWI/SNF complex" evidence=ISS]
[GO:0032508 "DNA duplex unwinding" evidence=ISS] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003677 GO:GO:0006338
GO:GO:0016514 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0003678 KO:K11647 EMBL:AE001362 OMA:NENMNMS PIR:F71607
RefSeq:XP_001349665.1 ProteinModelPortal:O96239
EnsemblProtists:PFB0730w:mRNA GeneID:812747 KEGG:pfa:PFB0730w
EuPathDB:PlasmoDB:PF3D7_0216000 Uniprot:O96239
Length = 1997
Score = 103 (41.3 bits), Expect = 2.0e-08, Sum P(3) = 2.0e-08
Identities = 25/56 (44%), Positives = 35/56 (62%)
Query: 659 PDGVLAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI--LKE 712
P ++ L+++Q L W+V ++LH GILAD+ GLGKTI TI+L LKE
Sbjct: 876 PSILIGGELMKYQLEGLEWLVSLYNNNLH---GILADEMGLGKTIQTISLFAYLKE 928
Score = 102 (41.0 bits), Expect = 2.0e-08, Sum P(3) = 2.0e-08
Identities = 20/58 (34%), Positives = 35/58 (60%)
Query: 902 LAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFL 959
L K+ W +V+DE +KN++++ ++K R L+GTP+QN + +L+S FL
Sbjct: 1001 LMKISWNYIVVDEGHRMKNNKSRFHVFLSEFKSKYRILLTGTPLQNNLSELWSLLNFL 1058
Score = 73 (30.8 bits), Expect = 2.0e-08, Sum P(3) = 2.0e-08
Identities = 23/80 (28%), Positives = 38/80 (47%)
Query: 766 FNFVEQAKGRPAAGTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCELAK 825
F ++++ K L++ P S L W E N+ SL+V+ Y G+ + +AK
Sbjct: 923 FAYLKEFKNNINVKNLIIVPLSTLPNWISEF-NRWCP--SLNVITYRGNKLERK--HIAK 977
Query: 826 ------FDVVITTYSIVSME 839
FD+ ITT+ +V E
Sbjct: 978 KLLEQTFDICITTFDLVIKE 997
>UNIPROTKB|E9PTG1 [details] [associations]
symbol:Smarca2 "Protein Smarca2" species:10116 "Rattus
norvegicus" [GO:0000790 "nuclear chromatin" evidence=IEA]
[GO:0001105 "RNA polymerase II transcription coactivator activity"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008285 "negative
regulation of cell proliferation" evidence=IEA] [GO:0016514
"SWI/SNF complex" evidence=IEA] [GO:0030308 "negative regulation of
cell growth" evidence=IEA] [GO:0035887 "aortic smooth muscle cell
differentiation" evidence=IEA] [GO:0044212 "transcription
regulatory region DNA binding" evidence=IEA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IEA] [GO:0045892
"negative regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0071564 "npBAF complex" evidence=IEA] [GO:0071565 "nBAF
complex" evidence=IEA] [GO:0071778 "WINAC complex" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
InterPro:IPR006576 InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271
Pfam:PF00439 Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00490
SMART:SM00592 SMART:SM00951 RGD:1302988 GO:GO:0005524 GO:GO:0045892
GO:GO:0008285 GO:GO:0030308 GO:GO:0045944 GO:GO:0044212
GO:GO:0045111 GO:GO:0000790 GO:GO:0071564 GO:GO:0016514
GO:GO:0071565 GO:GO:0004386 GO:GO:0001105 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 GO:GO:0071778
GeneTree:ENSGT00550000074659 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
OMA:PQEGMHQ GO:GO:0035887 IPI:IPI00464435
Ensembl:ENSRNOT00000016740 ArrayExpress:E9PTG1 Uniprot:E9PTG1
Length = 1597
Score = 113 (44.8 bits), Expect = 2.1e-08, Sum P(4) = 2.1e-08
Identities = 35/116 (30%), Positives = 55/116 (47%)
Query: 902 LAKVGWFRVVLDEAQSIKNHR---TQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRF 958
LAK+ W +++DE +KNH TQV + A RR L+GTP+QN + +L++ F
Sbjct: 847 LAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYV--APRRILLTGTPLQNKLPELWALLNF 904
Query: 959 LRYDPFAVYKSFCSMIKVPIS----------KNPVKGYKKLQAVLKTIMLRRTKGE 1004
L F +F P + + + ++L VL+ +LRR K E
Sbjct: 905 LLPTIFKSCSTFEQWFNAPFAMTGERVDLNEEETILIIRRLHKVLRPFLLRRLKKE 960
Score = 98 (39.6 bits), Expect = 2.1e-08, Sum P(4) = 2.1e-08
Identities = 23/43 (53%), Positives = 30/43 (69%)
Query: 668 LRHQRI-ALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 709
L+H ++ L WMV ++L+ GILAD+ GLGKTI TIALI
Sbjct: 731 LKHYQLQGLEWMVSLYNNNLN---GILADEMGLGKTIQTIALI 770
Score = 57 (25.1 bits), Expect = 2.1e-08, Sum P(4) = 2.1e-08
Identities = 16/57 (28%), Positives = 24/57 (42%)
Query: 781 LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDP-CELAKFDVVITTYSIV 836
L++ P S L W E S +S R+ P KF+V++TTY +
Sbjct: 784 LIIVPLSTLSNWTYEFDKWAPSVVKISYKGTPAMRRSLVPQLRSGKFNVLLTTYEYI 840
Score = 52 (23.4 bits), Expect = 2.1e-08, Sum P(4) = 2.1e-08
Identities = 19/75 (25%), Positives = 32/75 (42%)
Query: 508 FPYAQPSTLNKKELDGVKEDMEAEIKTRSMASHLLKLSPESIQSNSSDCKSHVDD-EPDI 566
+ A S + E D +ED E E +R + L P S + + D K ++ + D+
Sbjct: 634 YEVAPRSDSEESESDYEEEDEEEE-SSRQETEEKILLDPNSEEVSEKDAKQIIETAKQDV 692
Query: 567 CILEDISQPARSNQS 581
+ AR +QS
Sbjct: 693 DDEYSMQYSARGSQS 707
>UNIPROTKB|F1NVT7 [details] [associations]
symbol:CHD6 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 GeneTree:ENSGT00560000077077 EMBL:AADN02019534
EMBL:AADN02019532 EMBL:AADN02019533 IPI:IPI00818616
Ensembl:ENSGALT00000040615 ArrayExpress:F1NVT7 Uniprot:F1NVT7
Length = 1257
Score = 143 (55.4 bits), Expect = 2.7e-08, Sum P(4) = 2.7e-08
Identities = 34/103 (33%), Positives = 56/103 (54%)
Query: 902 LAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRY 961
L K+ W VV+DEA +KN ++ + + + L+GTP+QN++++L+S FL
Sbjct: 509 LKKIQWRCVVIDEAHRLKNRNCKLLEGLKLMALEHKVLLTGTPLQNSVEELFSLLNFLEP 568
Query: 962 DPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGE 1004
F +F ++ VK KLQ++LK +MLRR K +
Sbjct: 569 QQFPSETAFLEEFGDLKTEEQVK---KLQSILKPMMLRRLKDD 608
Score = 66 (28.3 bits), Expect = 2.7e-08, Sum P(4) = 2.7e-08
Identities = 27/100 (27%), Positives = 44/100 (44%)
Query: 760 GSSAKSFNFVEQAKGRPAAGT-LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGS--SR 816
G + +S F+ + G L++ P S + W E R ++ +VYHGS SR
Sbjct: 413 GKTIQSITFLSEIFLMGIHGPFLIIAPLSTITNWEREFRTWT----EMNAIVYHGSQISR 468
Query: 817 T---------KD----PCE-LAKFDVVITTYSIVSMEVPK 842
+D P + KF VVITT+ ++ + P+
Sbjct: 469 QMIQQYEMVYRDTQGNPLPGIFKFQVVITTFEMILADCPE 508
Score = 65 (27.9 bits), Expect = 2.7e-08, Sum P(4) = 2.7e-08
Identities = 15/43 (34%), Positives = 25/43 (58%)
Query: 667 LLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 709
L +Q ++W++ + +C ILAD+ GLGKTI +I +
Sbjct: 383 LREYQLEGMNWLLFNWYNRKNC---ILADEMGLGKTIQSITFL 422
Score = 39 (18.8 bits), Expect = 2.7e-08, Sum P(4) = 2.7e-08
Identities = 19/81 (23%), Positives = 30/81 (37%)
Query: 350 KRQCEDSKNGLPIYGNSLSNITLGDGKRSAQPCTYSHSHSSRTKQMVFAKDEGNDDLFPC 409
K++ KN +P+ L L +S + S R + + N+DL
Sbjct: 117 KKKKGKRKNEIPVDSLDLDQDLLSPSAQSPEESAESADSQKRRSGRQVKRRKYNEDLD-- 174
Query: 410 WSTVSDSVEPIDE-AVGRNSS 429
+ V D E I GR S+
Sbjct: 175 FKVVDDDGETIAVLGAGRTSA 195
>ASPGD|ASPL0000047400 [details] [associations]
symbol:AN2285 species:162425 "Emericella nidulans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0031011 "Ino80 complex" evidence=IEA] [GO:0043140
"ATP-dependent 3'-5' DNA helicase activity" evidence=IEA]
[GO:0016887 "ATPase activity" evidence=IEA] [GO:0042766 "nucleosome
mobilization" evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0043486 "histone exchange" evidence=IEA] [GO:0006348 "chromatin
silencing at telomere" evidence=IEA] [GO:0006366 "transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0016584
"nucleosome positioning" evidence=IEA] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0043618 "regulation of transcription from RNA
polymerase II promoter in response to stress" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF13892 PROSITE:PS51194
PROSITE:PS51413 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0006355 GO:GO:0003677 EMBL:BN001307 GO:GO:0006281
GO:GO:0006351 GO:GO:0016568 GO:GO:0004386 EMBL:AACD01000038
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
KO:K11665 RefSeq:XP_659889.1 ProteinModelPortal:Q5BAZ5
STRING:Q5BAZ5 EnsemblFungi:CADANIAT00008977 GeneID:2874790
KEGG:ani:AN2285.2 HOGENOM:HOG000048482 OMA:LYFQMTR
OrthoDB:EOG41G6C8 Uniprot:Q5BAZ5
Length = 1612
Score = 130 (50.8 bits), Expect = 2.7e-08, Sum P(3) = 2.7e-08
Identities = 33/106 (31%), Positives = 52/106 (49%)
Query: 904 KVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDP 963
KV W ++LDEAQ+IK+ ++ ++ G + R L+GTPIQN + +L++ F+
Sbjct: 924 KVKWQYMILDEAQAIKSSQSSRWKSLLGFHCRNRLLLTGTPIQNNMQELWALLHFIMPTL 983
Query: 964 FAVYKSFCSMIKVPISKNPVKGYK-------KLQAVLKTIMLRRTK 1002
F + F I + K +L +LK MLRR K
Sbjct: 984 FDSHDEFSEWFSKDIESHAQSNTKLNEDQLRRLHMILKPFMLRRVK 1029
Score = 83 (34.3 bits), Expect = 2.7e-08, Sum P(3) = 2.7e-08
Identities = 21/55 (38%), Positives = 32/55 (58%)
Query: 655 EASAPDGVLAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 709
E S P +L L +Q L+W+V ++ GILAD+ GLGKTI +I+++
Sbjct: 787 EISQPT-MLTAKLKEYQLKGLNWLVNLYEQGIN---GILADEMGLGKTIQSISVM 837
Score = 60 (26.2 bits), Expect = 2.7e-08, Sum P(3) = 2.7e-08
Identities = 20/55 (36%), Positives = 28/55 (50%)
Query: 781 LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCELAKF-DVVITTYS 834
LV+ P S L W +E+ V + + VL Y G++ KD L KF D TY+
Sbjct: 851 LVIAPASTLHNWQQEITKFVPN---IKVLPYWGNA--KDRKILRKFWDRKHITYT 900
>UNIPROTKB|K7GT64 [details] [associations]
symbol:LOC100622433 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
Gene3D:1.20.920.10 SUPFAM:SSF47370 PROSITE:PS00633
InterPro:IPR018359 GeneTree:ENSGT00550000074659 EMBL:FP102365
Ensembl:ENSSSCT00000034320 Uniprot:K7GT64
Length = 980
Score = 114 (45.2 bits), Expect = 3.1e-08, Sum P(3) = 3.1e-08
Identities = 36/116 (31%), Positives = 54/116 (46%)
Query: 902 LAKVGWFRVVLDEAQSIKNHR---TQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRF 958
LAK+ W +++DE +KNH TQV + A RR L+GTP+QN + +L++ F
Sbjct: 203 LAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYV--APRRLLLTGTPLQNKLPELWALLNF 260
Query: 959 LRYDPFAVYKSFCSMIKVPISKNPVKG----------YKKLQAVLKTIMLRRTKGE 1004
L F +F P + K ++L VL+ +LRR K E
Sbjct: 261 LLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEETILIIRRLHKVLRPFLLRRLKKE 316
Score = 92 (37.4 bits), Expect = 3.1e-08, Sum P(3) = 3.1e-08
Identities = 22/43 (51%), Positives = 29/43 (67%)
Query: 667 LLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 709
L ++Q L W+V ++L+ GILAD+ GLGKTI TIALI
Sbjct: 87 LKQYQIKGLEWLVSLYNNNLN---GILADEMGLGKTIQTIALI 126
Score = 60 (26.2 bits), Expect = 3.1e-08, Sum P(3) = 3.1e-08
Identities = 17/57 (29%), Positives = 25/57 (43%)
Query: 781 LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDP-CELAKFDVVITTYSIV 836
L++ P S L WA E S +S + R P KF+V++TTY +
Sbjct: 140 LIIVPLSTLSNWAYEFDKWAPSVVKVSYKGSPAARRAFVPQLRSGKFNVLLTTYEYI 196
>GENEDB_PFALCIPARUM|PF11_0053 [details] [associations]
symbol:PF11_0053 "PfSNF2L" species:5833
"Plasmodium falciparum" [GO:0006338 "chromatin remodeling"
evidence=ISS] [GO:0008094 "DNA-dependent ATPase activity"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0008026 "ATP-dependent helicase
activity" evidence=ISS] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR009057 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0006355 GO:GO:0003677
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0006338 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0016585 GO:GO:0008026
EMBL:AE014186 GO:GO:0008094 KO:K01509 RefSeq:XP_001347729.1
ProteinModelPortal:Q8IIW0 IntAct:Q8IIW0 MINT:MINT-1585538
EnsemblProtists:PF11_0053:mRNA GeneID:810605 KEGG:pfa:PF11_0053
EuPathDB:PlasmoDB:PF3D7_1104200 HOGENOM:HOG000282197
ProtClustDB:CLSZ2444952 Uniprot:Q8IIW0
Length = 1426
Score = 141 (54.7 bits), Expect = 3.2e-08, Sum P(2) = 3.2e-08
Identities = 36/107 (33%), Positives = 59/107 (55%)
Query: 902 LAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRY 961
L + WF +V+DEA IKN ++ ++ + LR++ R ++GTP+ N + +L+S FL
Sbjct: 438 LYDIDWFFLVIDEAHRIKNEKSVLSSSVRFLRSENRLLITGTPLHNNLKELWSLLNFLMP 497
Query: 962 DPFAVYKSFCSMIKVP-ISKNPVKGYK---KLQAVLKTIMLRRTKGE 1004
F + F ++ + IS N K + +L +LK MLRR K E
Sbjct: 498 KIFDNSEEFDNLFNISKISTNDNKQSEIITQLHTILKPFMLRRLKVE 544
Score = 81 (33.6 bits), Expect = 3.2e-08, Sum P(2) = 3.2e-08
Identities = 34/134 (25%), Positives = 58/134 (43%)
Query: 707 ALILKERPPSFRTEDDNKRQLETLNLDEEDNGIQVNGLDLVKQESDYCRVVPNGSSAKSF 766
A+ILK+ P QLE LN + ++NG+ + E + + S
Sbjct: 309 AIILKQ--PMNINGTMKPYQLEGLNWLYQLYRFKINGI--LADEMGLGKTLQTISLLCYL 364
Query: 767 NFVEQAKGRPAAGTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCEL--- 823
F + K + ++++CP S L W EE++ T + Y+G+ +
Sbjct: 365 RFNKNIKKK----SIIICPRSTLDNWYEEIKKWCTP---MKAFKYYGNKDQRKELNRNLL 417
Query: 824 -AKFDVVITTYSIV 836
+ FDV++TTY IV
Sbjct: 418 HSDFDVLLTTYEIV 431
Score = 77 (32.2 bits), Expect = 8.2e-08, Sum P(2) = 8.2e-08
Identities = 17/40 (42%), Positives = 26/40 (65%)
Query: 670 HQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 709
+Q L+W+ Q ++ GILAD+ GLGKT+ TI+L+
Sbjct: 325 YQLEGLNWLYQLYRFKIN---GILADEMGLGKTLQTISLL 361
>UNIPROTKB|Q8IIW0 [details] [associations]
symbol:PF11_0053 "PfSNF2L" species:36329 "Plasmodium
falciparum 3D7" [GO:0006338 "chromatin remodeling" evidence=ISS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=ISS] [GO:0008026 "ATP-dependent helicase activity"
evidence=ISS] [GO:0008094 "DNA-dependent ATPase activity"
evidence=ISS] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR009057 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0006355 GO:GO:0003677
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0006338 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0016585 GO:GO:0008026
EMBL:AE014186 GO:GO:0008094 KO:K01509 RefSeq:XP_001347729.1
ProteinModelPortal:Q8IIW0 IntAct:Q8IIW0 MINT:MINT-1585538
EnsemblProtists:PF11_0053:mRNA GeneID:810605 KEGG:pfa:PF11_0053
EuPathDB:PlasmoDB:PF3D7_1104200 HOGENOM:HOG000282197
ProtClustDB:CLSZ2444952 Uniprot:Q8IIW0
Length = 1426
Score = 141 (54.7 bits), Expect = 3.2e-08, Sum P(2) = 3.2e-08
Identities = 36/107 (33%), Positives = 59/107 (55%)
Query: 902 LAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRY 961
L + WF +V+DEA IKN ++ ++ + LR++ R ++GTP+ N + +L+S FL
Sbjct: 438 LYDIDWFFLVIDEAHRIKNEKSVLSSSVRFLRSENRLLITGTPLHNNLKELWSLLNFLMP 497
Query: 962 DPFAVYKSFCSMIKVP-ISKNPVKGYK---KLQAVLKTIMLRRTKGE 1004
F + F ++ + IS N K + +L +LK MLRR K E
Sbjct: 498 KIFDNSEEFDNLFNISKISTNDNKQSEIITQLHTILKPFMLRRLKVE 544
Score = 81 (33.6 bits), Expect = 3.2e-08, Sum P(2) = 3.2e-08
Identities = 34/134 (25%), Positives = 58/134 (43%)
Query: 707 ALILKERPPSFRTEDDNKRQLETLNLDEEDNGIQVNGLDLVKQESDYCRVVPNGSSAKSF 766
A+ILK+ P QLE LN + ++NG+ + E + + S
Sbjct: 309 AIILKQ--PMNINGTMKPYQLEGLNWLYQLYRFKINGI--LADEMGLGKTLQTISLLCYL 364
Query: 767 NFVEQAKGRPAAGTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCEL--- 823
F + K + ++++CP S L W EE++ T + Y+G+ +
Sbjct: 365 RFNKNIKKK----SIIICPRSTLDNWYEEIKKWCTP---MKAFKYYGNKDQRKELNRNLL 417
Query: 824 -AKFDVVITTYSIV 836
+ FDV++TTY IV
Sbjct: 418 HSDFDVLLTTYEIV 431
Score = 77 (32.2 bits), Expect = 8.2e-08, Sum P(2) = 8.2e-08
Identities = 17/40 (42%), Positives = 26/40 (65%)
Query: 670 HQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 709
+Q L+W+ Q ++ GILAD+ GLGKT+ TI+L+
Sbjct: 325 YQLEGLNWLYQLYRFKIN---GILADEMGLGKTLQTISLL 361
>UNIPROTKB|F1PTH3 [details] [associations]
symbol:CHD6 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR002464 InterPro:IPR006576
Pfam:PF00176 Pfam:PF00271 Pfam:PF07533 PROSITE:PS00690
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
SMART:SM00717 Pfam:PF00385 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0003682 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR023780 OMA:CKWATME GeneTree:ENSGT00560000077077
EMBL:AAEX03013942 EMBL:AAEX03013943 Ensembl:ENSCAFT00000014716
Uniprot:F1PTH3
Length = 2715
Score = 143 (55.4 bits), Expect = 3.5e-08, Sum P(4) = 3.5e-08
Identities = 33/103 (32%), Positives = 56/103 (54%)
Query: 902 LAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRY 961
L K+ W V++DEA +KN ++ + + + L+GTP+QN++++L+S FL
Sbjct: 587 LKKIHWSCVIIDEAHRLKNRNCKLLEGLKLMALEHKVLLTGTPLQNSVEELFSLLNFLEP 646
Query: 962 DPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGE 1004
F +F ++ VK KLQ++LK +MLRR K +
Sbjct: 647 SQFPSETAFLEEFGDLKTEEQVK---KLQSILKPMMLRRLKDD 686
Score = 71 (30.1 bits), Expect = 3.5e-08, Sum P(4) = 3.5e-08
Identities = 28/100 (28%), Positives = 45/100 (45%)
Query: 760 GSSAKSFNFVEQAKGRPAAGT-LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGS--SR 816
G + +S F+ + R G L++ P S + W E R ++ +VYHGS SR
Sbjct: 491 GKTIQSITFLSEIFLRGIHGPFLIIAPLSTITNWEREFRTWT----EMNAIVYHGSQISR 546
Query: 817 T---------KD----PCE-LAKFDVVITTYSIVSMEVPK 842
+D P + KF VVITT+ ++ + P+
Sbjct: 547 QMIQQYEMVYRDAQGNPLSGVFKFHVVITTFEMILADCPE 586
Score = 65 (27.9 bits), Expect = 3.5e-08, Sum P(4) = 3.5e-08
Identities = 15/43 (34%), Positives = 25/43 (58%)
Query: 667 LLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 709
L +Q ++W++ + +C ILAD+ GLGKTI +I +
Sbjct: 461 LREYQLEGMNWLLFNWYNRKNC---ILADEMGLGKTIQSITFL 500
Score = 47 (21.6 bits), Expect = 3.5e-08, Sum P(4) = 3.5e-08
Identities = 18/73 (24%), Positives = 30/73 (41%)
Query: 48 SPGDLSLRNLSQDELVQDVGSHSNLQLQSGFKGDMRDIATYPLY-----GLEISGAESGG 102
SP + Q+E ++DV SH L + + + +P G+E SG G
Sbjct: 34 SPSPFE-HSTDQEEKIEDVASHC-LSQKDLYAAEEEAETLFPRKMTSHNGMEDSGGGGTG 91
Query: 103 LGDSSSQLEPTEQ 115
+ + +P EQ
Sbjct: 92 VKKKRKKKDPGEQ 104
>UNIPROTKB|J9P0F6 [details] [associations]
symbol:CHD6 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR002464 InterPro:IPR006576
Pfam:PF00176 Pfam:PF00271 Pfam:PF07533 PROSITE:PS00690
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
SMART:SM00717 Pfam:PF00385 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0003682 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR023780 CTD:84181 KO:K14436 GeneTree:ENSGT00560000077077
EMBL:AAEX03013942 EMBL:AAEX03013943 RefSeq:XP_534421.3
Ensembl:ENSCAFT00000048852 GeneID:477230 KEGG:cfa:477230
Uniprot:J9P0F6
Length = 2715
Score = 143 (55.4 bits), Expect = 3.5e-08, Sum P(4) = 3.5e-08
Identities = 33/103 (32%), Positives = 56/103 (54%)
Query: 902 LAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRY 961
L K+ W V++DEA +KN ++ + + + L+GTP+QN++++L+S FL
Sbjct: 587 LKKIHWSCVIIDEAHRLKNRNCKLLEGLKLMALEHKVLLTGTPLQNSVEELFSLLNFLEP 646
Query: 962 DPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGE 1004
F +F ++ VK KLQ++LK +MLRR K +
Sbjct: 647 SQFPSETAFLEEFGDLKTEEQVK---KLQSILKPMMLRRLKDD 686
Score = 71 (30.1 bits), Expect = 3.5e-08, Sum P(4) = 3.5e-08
Identities = 28/100 (28%), Positives = 45/100 (45%)
Query: 760 GSSAKSFNFVEQAKGRPAAGT-LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGS--SR 816
G + +S F+ + R G L++ P S + W E R ++ +VYHGS SR
Sbjct: 491 GKTIQSITFLSEIFLRGIHGPFLIIAPLSTITNWEREFRTWT----EMNAIVYHGSQISR 546
Query: 817 T---------KD----PCE-LAKFDVVITTYSIVSMEVPK 842
+D P + KF VVITT+ ++ + P+
Sbjct: 547 QMIQQYEMVYRDAQGNPLSGVFKFHVVITTFEMILADCPE 586
Score = 65 (27.9 bits), Expect = 3.5e-08, Sum P(4) = 3.5e-08
Identities = 15/43 (34%), Positives = 25/43 (58%)
Query: 667 LLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 709
L +Q ++W++ + +C ILAD+ GLGKTI +I +
Sbjct: 461 LREYQLEGMNWLLFNWYNRKNC---ILADEMGLGKTIQSITFL 500
Score = 47 (21.6 bits), Expect = 3.5e-08, Sum P(4) = 3.5e-08
Identities = 18/73 (24%), Positives = 30/73 (41%)
Query: 48 SPGDLSLRNLSQDELVQDVGSHSNLQLQSGFKGDMRDIATYPLY-----GLEISGAESGG 102
SP + Q+E ++DV SH L + + + +P G+E SG G
Sbjct: 34 SPSPFE-HSTDQEEKIEDVASHC-LSQKDLYAAEEEAETLFPRKMTSHNGMEDSGGGGTG 91
Query: 103 LGDSSSQLEPTEQ 115
+ + +P EQ
Sbjct: 92 VKKKRKKKDPGEQ 104
>UNIPROTKB|A5PKK5 [details] [associations]
symbol:SMARCA2 "SMARCA2 protein" species:9913 "Bos taurus"
[GO:0071778 "WINAC complex" evidence=IEA] [GO:0071565 "nBAF
complex" evidence=IEA] [GO:0071564 "npBAF complex" evidence=IEA]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0045111 "intermediate filament cytoskeleton"
evidence=IEA] [GO:0044212 "transcription regulatory region DNA
binding" evidence=IEA] [GO:0035887 "aortic smooth muscle cell
differentiation" evidence=IEA] [GO:0030308 "negative regulation of
cell growth" evidence=IEA] [GO:0016514 "SWI/SNF complex"
evidence=IEA] [GO:0008285 "negative regulation of cell
proliferation" evidence=IEA] [GO:0001105 "RNA polymerase II
transcription coactivator activity" evidence=IEA] [GO:0000790
"nuclear chromatin" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
InterPro:IPR006576 InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271
Pfam:PF00439 Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00490
SMART:SM00592 SMART:SM00951 GO:GO:0005524 GO:GO:0045892
GO:GO:0008285 GO:GO:0030308 GO:GO:0045944 GO:GO:0044212
GO:GO:0045111 GO:GO:0000790 GO:GO:0071564 GO:GO:0016514
GO:GO:0071565 GO:GO:0004386 GO:GO:0001105 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10
SUPFAM:SSF47370 PROSITE:PS00633 InterPro:IPR018359 GO:GO:0071778
KO:K11647 GeneTree:ENSGT00550000074659 InterPro:IPR013999
InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529 SMART:SM00573
PROSITE:PS51204 CTD:6595 HOGENOM:HOG000172363 HOVERGEN:HBG056636
OMA:PQEGMHQ GO:GO:0035887 OrthoDB:EOG418BMJ EMBL:DAAA02022747
EMBL:DAAA02022748 EMBL:DAAA02022749 EMBL:BC142521 IPI:IPI00854472
RefSeq:NP_001092585.1 UniGene:Bt.63204 SMR:A5PKK5 STRING:A5PKK5
Ensembl:ENSBTAT00000035681 GeneID:540904 KEGG:bta:540904
InParanoid:A5PKK5 NextBio:20878906 Uniprot:A5PKK5
Length = 1554
Score = 113 (44.8 bits), Expect = 3.6e-08, Sum P(4) = 3.6e-08
Identities = 35/116 (30%), Positives = 55/116 (47%)
Query: 902 LAKVGWFRVVLDEAQSIKNHR---TQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRF 958
LAK+ W +++DE +KNH TQV + A RR L+GTP+QN + +L++ F
Sbjct: 822 LAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYV--APRRILLTGTPLQNKLPELWALLNF 879
Query: 959 LRYDPFAVYKSFCSMIKVPIS----------KNPVKGYKKLQAVLKTIMLRRTKGE 1004
L F +F P + + + ++L VL+ +LRR K E
Sbjct: 880 LLPTIFKSCSTFEQWFNAPFAMTGERVDLNEEETILIIRRLHKVLRPFLLRRLKKE 935
Score = 98 (39.6 bits), Expect = 3.6e-08, Sum P(4) = 3.6e-08
Identities = 23/43 (53%), Positives = 30/43 (69%)
Query: 668 LRHQRI-ALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 709
L+H ++ L WMV ++L+ GILAD+ GLGKTI TIALI
Sbjct: 706 LKHYQLQGLEWMVSLYNNNLN---GILADEMGLGKTIQTIALI 745
Score = 57 (25.1 bits), Expect = 3.6e-08, Sum P(4) = 3.6e-08
Identities = 16/57 (28%), Positives = 24/57 (42%)
Query: 781 LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDP-CELAKFDVVITTYSIV 836
L++ P S L W E S +S R+ P KF+V++TTY +
Sbjct: 759 LIIVPLSTLSNWTYEFDKWAPSVVKISYKGTPAMRRSLVPQLRSGKFNVLLTTYEYI 815
Score = 49 (22.3 bits), Expect = 3.6e-08, Sum P(4) = 3.6e-08
Identities = 18/75 (24%), Positives = 32/75 (42%)
Query: 508 FPYAQPSTLNKKELDGVKEDMEAEIKTRSMASHLLKLSPESIQSNSSDCKSHVDD-EPDI 566
+ A S + + D +ED E E +R + L P S + + D K ++ + D+
Sbjct: 609 YEVAPRSDSEESDSDYEEEDEEEE-SSRQETEEKILLDPNSEEVSEKDAKQIIETAKQDV 667
Query: 567 CILEDISQPARSNQS 581
+ AR +QS
Sbjct: 668 DDEYSMQYSARGSQS 682
>UNIPROTKB|F1SJG5 [details] [associations]
symbol:SMARCA2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0071778 "WINAC complex" evidence=IEA] [GO:0071565 "nBAF
complex" evidence=IEA] [GO:0071564 "npBAF complex" evidence=IEA]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0045111 "intermediate filament cytoskeleton"
evidence=IEA] [GO:0044212 "transcription regulatory region DNA
binding" evidence=IEA] [GO:0035887 "aortic smooth muscle cell
differentiation" evidence=IEA] [GO:0030308 "negative regulation of
cell growth" evidence=IEA] [GO:0016514 "SWI/SNF complex"
evidence=IEA] [GO:0008285 "negative regulation of cell
proliferation" evidence=IEA] [GO:0001105 "RNA polymerase II
transcription coactivator activity" evidence=IEA] [GO:0000790
"nuclear chromatin" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
InterPro:IPR006576 InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271
Pfam:PF00439 Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00490
SMART:SM00592 SMART:SM00951 GO:GO:0005524 GO:GO:0045892
GO:GO:0008285 GO:GO:0030308 GO:GO:0045944 GO:GO:0044212
GO:GO:0045111 GO:GO:0000790 GO:GO:0071564 GO:GO:0016514
GO:GO:0071565 GO:GO:0004386 GO:GO:0001105 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 GO:GO:0071778
GeneTree:ENSGT00550000074659 OMA:PQEGMHQ GO:GO:0035887
EMBL:CT998562 EMBL:CU062411 Ensembl:ENSSSCT00000005766
Uniprot:F1SJG5
Length = 1556
Score = 113 (44.8 bits), Expect = 3.7e-08, Sum P(4) = 3.7e-08
Identities = 35/116 (30%), Positives = 55/116 (47%)
Query: 902 LAKVGWFRVVLDEAQSIKNHR---TQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRF 958
LAK+ W +++DE +KNH TQV + A RR L+GTP+QN + +L++ F
Sbjct: 824 LAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYV--APRRILLTGTPLQNKLPELWALLNF 881
Query: 959 LRYDPFAVYKSFCSMIKVPIS----------KNPVKGYKKLQAVLKTIMLRRTKGE 1004
L F +F P + + + ++L VL+ +LRR K E
Sbjct: 882 LLPTIFKSCSTFEQWFNAPFAMTGERVDLNEEETILIIRRLHKVLRPFLLRRLKKE 937
Score = 98 (39.6 bits), Expect = 3.7e-08, Sum P(4) = 3.7e-08
Identities = 23/43 (53%), Positives = 30/43 (69%)
Query: 668 LRHQRI-ALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 709
L+H ++ L WMV ++L+ GILAD+ GLGKTI TIALI
Sbjct: 708 LKHYQLQGLEWMVSLYNNNLN---GILADEMGLGKTIQTIALI 747
Score = 57 (25.1 bits), Expect = 3.7e-08, Sum P(4) = 3.7e-08
Identities = 16/57 (28%), Positives = 24/57 (42%)
Query: 781 LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDP-CELAKFDVVITTYSIV 836
L++ P S L W E S +S R+ P KF+V++TTY +
Sbjct: 761 LIIVPLSTLSNWTYEFDKWAPSVVKISYKGTPAMRRSLVPQLRSGKFNVLLTTYEYI 817
Score = 49 (22.3 bits), Expect = 3.7e-08, Sum P(4) = 3.7e-08
Identities = 18/75 (24%), Positives = 32/75 (42%)
Query: 508 FPYAQPSTLNKKELDGVKEDMEAEIKTRSMASHLLKLSPESIQSNSSDCKSHVDD-EPDI 566
+ A S + + D +ED E E +R + L P S + + D K ++ + D+
Sbjct: 611 YEVAPRSDSEESDSDYEEEDEEEE-SSRQETEEKILLDPNSEEVSEKDAKQIIETAKQDV 669
Query: 567 CILEDISQPARSNQS 581
+ AR +QS
Sbjct: 670 DDEYSMQYSARGSQS 684
Score = 38 (18.4 bits), Expect = 4.3e-07, Sum P(4) = 4.3e-07
Identities = 18/63 (28%), Positives = 26/63 (41%)
Query: 604 KPVVTSQHSSYSDYPGYPGVPLTGLGGMKSKASDERLILQVAMQGISQPNAEASAPDGVL 663
+P Q + +Y P P LGG + ++L + A G P A+AP
Sbjct: 229 QPQQPQQQQALVNY-NRPSGPGPELGG---PSPPQKLPVP-APSGRPSPAPPAAAPPPAA 283
Query: 664 AVP 666
AVP
Sbjct: 284 AVP 286
>UNIPROTKB|G4NCV5 [details] [associations]
symbol:MGG_01012 "ISWI chromatin-remodeling complex ATPase
ISW2" species:242507 "Magnaporthe oryzae 70-15" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000330
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR009057
InterPro:IPR015194 InterPro:IPR015195 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 PROSITE:PS51194 SMART:SM00490
SMART:SM00717 GO:GO:0005524 EMBL:CM001235 GO:GO:0003677
Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR017884
PROSITE:PS51293 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0016585 GO:GO:0031491 GO:GO:0043044
SUPFAM:SSF101224 RefSeq:XP_003717932.1 EnsemblFungi:MGG_01012T0
GeneID:2674262 KEGG:mgr:MGG_01012 Uniprot:G4NCV5
Length = 1128
Score = 128 (50.1 bits), Expect = 3.9e-08, Sum P(4) = 3.9e-08
Identities = 30/103 (29%), Positives = 53/103 (51%)
Query: 902 LAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRY 961
L K W +++DEA IKN + +A+ ++ R ++GTP+QN I +L++ FL
Sbjct: 303 LKKFAWEYIIIDEAHRIKNEESSLAQVIRLFNSRNRLLITGTPLQNNIHELWALLNFLLP 362
Query: 962 DPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGE 1004
D F ++F ++ ++L VL+ +LRR K +
Sbjct: 363 DVFGDSEAFDQWFSGE-GQDSDTVVQQLHRVLRPFLLRRVKAD 404
Score = 86 (35.3 bits), Expect = 3.9e-08, Sum P(4) = 3.9e-08
Identities = 26/81 (32%), Positives = 45/81 (55%)
Query: 632 KSKASDERLILQVAMQGISQPNAEASAPDGVLAVPLLRHQRIA-LSWMVQKETSSLHCSG 690
+++A ++ +L+ G S +P + +R +IA L+W++ SLH +G
Sbjct: 152 RTEAEEDAELLKDEKHGGSAETVFRESPAFIQGT--MRDYQIAGLNWLI-----SLHENG 204
Query: 691 --GILADDQGLGKTISTIALI 709
GILAD+ GLGKT+ TI+ +
Sbjct: 205 ISGILADEMGLGKTLQTISFL 225
Score = 59 (25.8 bits), Expect = 3.9e-08, Sum P(4) = 3.9e-08
Identities = 20/64 (31%), Positives = 30/64 (46%)
Query: 781 LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCELAK-----FDVVITTYSI 835
LV+ P S L W E K T + ++VLV G+ + + FDV IT+Y +
Sbjct: 239 LVIVPKSTLDNWKREF-GKWTPE--VNVLVLQGAKEERAALIAERLVDESFDVCITSYEM 295
Query: 836 VSME 839
+ E
Sbjct: 296 ILRE 299
Score = 37 (18.1 bits), Expect = 3.9e-08, Sum P(4) = 3.9e-08
Identities = 8/18 (44%), Positives = 10/18 (55%)
Query: 195 DSRSVDASPSSITENFDE 212
D+ VDA+P S DE
Sbjct: 14 DASMVDAAPESAKRRGDE 31
>UNIPROTKB|F1NLW6 [details] [associations]
symbol:CHD6 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271 Pfam:PF07533
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
SMART:SM00592 Pfam:PF00385 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
GeneTree:ENSGT00560000077077 EMBL:AADN02019534 EMBL:AADN02019532
EMBL:AADN02019533 IPI:IPI00572954 Ensembl:ENSGALT00000002030
ArrayExpress:F1NLW6 Uniprot:F1NLW6
Length = 2005
Score = 143 (55.4 bits), Expect = 3.9e-08, Sum P(3) = 3.9e-08
Identities = 34/103 (33%), Positives = 56/103 (54%)
Query: 902 LAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRY 961
L K+ W VV+DEA +KN ++ + + + L+GTP+QN++++L+S FL
Sbjct: 384 LKKIQWRCVVIDEAHRLKNRNCKLLEGLKLMALEHKVLLTGTPLQNSVEELFSLLNFLEP 443
Query: 962 DPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGE 1004
F +F ++ VK KLQ++LK +MLRR K +
Sbjct: 444 QQFPSETAFLEEFGDLKTEEQVK---KLQSILKPMMLRRLKDD 483
Score = 66 (28.3 bits), Expect = 3.9e-08, Sum P(3) = 3.9e-08
Identities = 27/100 (27%), Positives = 44/100 (44%)
Query: 760 GSSAKSFNFVEQAKGRPAAGT-LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGS--SR 816
G + +S F+ + G L++ P S + W E R ++ +VYHGS SR
Sbjct: 288 GKTIQSITFLSEIFLMGIHGPFLIIAPLSTITNWEREFRTWT----EMNAIVYHGSQISR 343
Query: 817 T---------KD----PCE-LAKFDVVITTYSIVSMEVPK 842
+D P + KF VVITT+ ++ + P+
Sbjct: 344 QMIQQYEMVYRDTQGNPLPGIFKFQVVITTFEMILADCPE 383
Score = 65 (27.9 bits), Expect = 3.9e-08, Sum P(3) = 3.9e-08
Identities = 15/43 (34%), Positives = 25/43 (58%)
Query: 667 LLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 709
L +Q ++W++ + +C ILAD+ GLGKTI +I +
Sbjct: 258 LREYQLEGMNWLLFNWYNRKNC---ILADEMGLGKTIQSITFL 297
>UNIPROTKB|F1NLV5 [details] [associations]
symbol:CHD6 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271 Pfam:PF07533
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
SMART:SM00592 Pfam:PF00385 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
OMA:CKWATME GeneTree:ENSGT00560000077077 EMBL:AADN02019534
EMBL:AADN02019532 EMBL:AADN02019533 IPI:IPI00588365
Ensembl:ENSGALT00000002034 ArrayExpress:F1NLV5 Uniprot:F1NLV5
Length = 2007
Score = 143 (55.4 bits), Expect = 3.9e-08, Sum P(3) = 3.9e-08
Identities = 34/103 (33%), Positives = 56/103 (54%)
Query: 902 LAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRY 961
L K+ W VV+DEA +KN ++ + + + L+GTP+QN++++L+S FL
Sbjct: 384 LKKIQWRCVVIDEAHRLKNRNCKLLEGLKLMALEHKVLLTGTPLQNSVEELFSLLNFLEP 443
Query: 962 DPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGE 1004
F +F ++ VK KLQ++LK +MLRR K +
Sbjct: 444 QQFPSETAFLEEFGDLKTEEQVK---KLQSILKPMMLRRLKDD 483
Score = 66 (28.3 bits), Expect = 3.9e-08, Sum P(3) = 3.9e-08
Identities = 27/100 (27%), Positives = 44/100 (44%)
Query: 760 GSSAKSFNFVEQAKGRPAAGT-LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGS--SR 816
G + +S F+ + G L++ P S + W E R ++ +VYHGS SR
Sbjct: 288 GKTIQSITFLSEIFLMGIHGPFLIIAPLSTITNWEREFRTWT----EMNAIVYHGSQISR 343
Query: 817 T---------KD----PCE-LAKFDVVITTYSIVSMEVPK 842
+D P + KF VVITT+ ++ + P+
Sbjct: 344 QMIQQYEMVYRDTQGNPLPGIFKFQVVITTFEMILADCPE 383
Score = 65 (27.9 bits), Expect = 3.9e-08, Sum P(3) = 3.9e-08
Identities = 15/43 (34%), Positives = 25/43 (58%)
Query: 667 LLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 709
L +Q ++W++ + +C ILAD+ GLGKTI +I +
Sbjct: 258 LREYQLEGMNWLLFNWYNRKNC---ILADEMGLGKTIQSITFL 297
>UNIPROTKB|P51531 [details] [associations]
symbol:SMARCA2 "Probable global transcription activator
SNF2L2" species:9606 "Homo sapiens" [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0007399
"nervous system development" evidence=IEA] [GO:0008285 "negative
regulation of cell proliferation" evidence=IEA] [GO:0035887 "aortic
smooth muscle cell differentiation" evidence=IEA] [GO:0016514
"SWI/SNF complex" evidence=IDA] [GO:0071564 "npBAF complex"
evidence=ISS] [GO:0071565 "nBAF complex" evidence=ISS] [GO:0005515
"protein binding" evidence=IPI] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=IMP;IDA] [GO:0001105 "RNA
polymerase II transcription coactivator activity" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0044212 "transcription
regulatory region DNA binding" evidence=IDA] [GO:0003713
"transcription coactivator activity" evidence=TAS] [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IDA;TAS] [GO:0071778 "WINAC
complex" evidence=IDA] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=IDA] [GO:0000790 "nuclear
chromatin" evidence=IDA] [GO:0030308 "negative regulation of cell
growth" evidence=IMP] [GO:0006338 "chromatin remodeling"
evidence=TAS] [GO:0008094 "DNA-dependent ATPase activity"
evidence=TAS] [GO:0000122 "negative regulation of transcription
from RNA polymerase II promoter" evidence=TAS] [GO:0005730
"nucleolus" evidence=IDA] [GO:0043231 "intracellular
membrane-bounded organelle" evidence=IDA] [GO:0045111 "intermediate
filament cytoskeleton" evidence=IDA] InterPro:IPR000330
InterPro:IPR001487 InterPro:IPR001650 InterPro:IPR006576
InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503 PROSITE:PS50014
PROSITE:PS51194 SMART:SM00297 SMART:SM00490 SMART:SM00592
SMART:SM00951 GO:GO:0005524 GO:GO:0008285 GO:GO:0007399
GO:GO:0005654 GO:GO:0030308 GO:GO:0006338 GO:GO:0000122
GO:GO:0044212 GO:GO:0045111 GO:GO:0000790 GO:GO:0071564
GO:GO:0016514 GO:GO:0071565 EMBL:CH471071 GO:GO:0004386
Pathway_Interaction_DB:ar_tf_pathway GO:GO:0001105 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10
SUPFAM:SSF47370 PROSITE:PS00633 InterPro:IPR018359 GO:GO:0071778
KO:K11647 ChiTaRS:SMARCA2 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
GO:GO:0008094 EMBL:X72889 EMBL:D26155 EMBL:AL359076 EMBL:AL138755
IPI:IPI00386718 IPI:IPI00514648 PIR:S39580 PIR:S45251
RefSeq:NP_003061.3 RefSeq:NP_620614.2 UniGene:Hs.298990 PDB:2DAT
PDBsum:2DAT ProteinModelPortal:P51531 SMR:P51531 DIP:DIP-29005N
IntAct:P51531 MINT:MINT-1898892 STRING:P51531 PhosphoSite:P51531
DMDM:212276472 PaxDb:P51531 PRIDE:P51531 DNASU:6595
Ensembl:ENST00000349721 Ensembl:ENST00000357248
Ensembl:ENST00000382194 Ensembl:ENST00000382203 GeneID:6595
KEGG:hsa:6595 UCSC:uc003zhc.3 UCSC:uc003zhd.3 CTD:6595
GeneCards:GC09P002005 HGNC:HGNC:11098 HPA:HPA029981 MIM:600014
MIM:601358 neXtProt:NX_P51531 Orphanet:3051 PharmGKB:PA35948
HOGENOM:HOG000172363 HOVERGEN:HBG056636 InParanoid:P51531
OMA:PQEGMHQ PhylomeDB:P51531 EvolutionaryTrace:P51531
GenomeRNAi:6595 NextBio:25649 PMAP-CutDB:P51531 ArrayExpress:P51531
Bgee:P51531 CleanEx:HS_SMARCA2 Genevestigator:P51531
GermOnline:ENSG00000080503 GO:GO:0035887 Uniprot:P51531
Length = 1590
Score = 113 (44.8 bits), Expect = 4.0e-08, Sum P(4) = 4.0e-08
Identities = 35/116 (30%), Positives = 55/116 (47%)
Query: 902 LAKVGWFRVVLDEAQSIKNHR---TQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRF 958
LAK+ W +++DE +KNH TQV + A RR L+GTP+QN + +L++ F
Sbjct: 840 LAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYV--APRRILLTGTPLQNKLPELWALLNF 897
Query: 959 LRYDPFAVYKSFCSMIKVPIS----------KNPVKGYKKLQAVLKTIMLRRTKGE 1004
L F +F P + + + ++L VL+ +LRR K E
Sbjct: 898 LLPTIFKSCSTFEQWFNAPFAMTGERVDLNEEETILIIRRLHKVLRPFLLRRLKKE 953
Score = 98 (39.6 bits), Expect = 4.0e-08, Sum P(4) = 4.0e-08
Identities = 23/43 (53%), Positives = 30/43 (69%)
Query: 668 LRHQRI-ALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 709
L+H ++ L WMV ++L+ GILAD+ GLGKTI TIALI
Sbjct: 724 LKHYQLQGLEWMVSLYNNNLN---GILADEMGLGKTIQTIALI 763
Score = 57 (25.1 bits), Expect = 4.0e-08, Sum P(4) = 4.0e-08
Identities = 16/57 (28%), Positives = 24/57 (42%)
Query: 781 LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDP-CELAKFDVVITTYSIV 836
L++ P S L W E S +S R+ P KF+V++TTY +
Sbjct: 777 LIIVPLSTLSNWTYEFDKWAPSVVKISYKGTPAMRRSLVPQLRSGKFNVLLTTYEYI 833
Score = 49 (22.3 bits), Expect = 4.0e-08, Sum P(4) = 4.0e-08
Identities = 18/75 (24%), Positives = 32/75 (42%)
Query: 508 FPYAQPSTLNKKELDGVKEDMEAEIKTRSMASHLLKLSPESIQSNSSDCKSHVDD-EPDI 566
+ A S + + D +ED E E +R + L P S + + D K ++ + D+
Sbjct: 627 YEVAPRSDSEESDSDYEEEDEEEE-SSRQETEEKILLDPNSEEVSEKDAKQIIETAKQDV 685
Query: 567 CILEDISQPARSNQS 581
+ AR +QS
Sbjct: 686 DDEYSMQYSARGSQS 700
>UNIPROTKB|E2RKP4 [details] [associations]
symbol:SMARCA2 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0071778 "WINAC complex" evidence=IEA]
[GO:0071565 "nBAF complex" evidence=IEA] [GO:0071564 "npBAF
complex" evidence=IEA] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IEA] [GO:0044212
"transcription regulatory region DNA binding" evidence=IEA]
[GO:0035887 "aortic smooth muscle cell differentiation"
evidence=IEA] [GO:0030308 "negative regulation of cell growth"
evidence=IEA] [GO:0016514 "SWI/SNF complex" evidence=IEA]
[GO:0008285 "negative regulation of cell proliferation"
evidence=IEA] [GO:0001105 "RNA polymerase II transcription
coactivator activity" evidence=IEA] [GO:0000790 "nuclear chromatin"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] InterPro:IPR000330
InterPro:IPR001487 InterPro:IPR001650 InterPro:IPR006576
InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503 PROSITE:PS50014
PROSITE:PS51194 SMART:SM00297 SMART:SM00490 SMART:SM00592
SMART:SM00951 GO:GO:0005524 GO:GO:0045892 GO:GO:0008285
GO:GO:0030308 GO:GO:0045944 GO:GO:0044212 GO:GO:0045111
GO:GO:0000790 GO:GO:0071564 GO:GO:0016514 GO:GO:0071565
GO:GO:0004386 GO:GO:0001105 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370 PROSITE:PS00633
InterPro:IPR018359 GO:GO:0071778 GeneTree:ENSGT00550000074659
InterPro:IPR013999 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 SMART:SM00573 PROSITE:PS51204 GO:GO:0035887
EMBL:AAEX03000600 Ensembl:ENSCAFT00000003206 NextBio:20852013
Uniprot:E2RKP4
Length = 1556
Score = 113 (44.8 bits), Expect = 4.6e-08, Sum P(4) = 4.6e-08
Identities = 35/116 (30%), Positives = 55/116 (47%)
Query: 902 LAKVGWFRVVLDEAQSIKNHR---TQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRF 958
LAK+ W +++DE +KNH TQV + A RR L+GTP+QN + +L++ F
Sbjct: 824 LAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYV--APRRILLTGTPLQNKLPELWALLNF 881
Query: 959 LRYDPFAVYKSFCSMIKVPIS----------KNPVKGYKKLQAVLKTIMLRRTKGE 1004
L F +F P + + + ++L VL+ +LRR K E
Sbjct: 882 LLPTIFKSCSTFEQWFNAPFAMTGERVDLNEEETILIIRRLHKVLRPFLLRRLKKE 937
Score = 98 (39.6 bits), Expect = 4.6e-08, Sum P(4) = 4.6e-08
Identities = 23/43 (53%), Positives = 30/43 (69%)
Query: 668 LRHQRI-ALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 709
L+H ++ L WMV ++L+ GILAD+ GLGKTI TIALI
Sbjct: 708 LKHYQLQGLEWMVSLYNNNLN---GILADEMGLGKTIQTIALI 747
Score = 57 (25.1 bits), Expect = 4.6e-08, Sum P(4) = 4.6e-08
Identities = 16/57 (28%), Positives = 24/57 (42%)
Query: 781 LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDP-CELAKFDVVITTYSIV 836
L++ P S L W E S +S R+ P KF+V++TTY +
Sbjct: 761 LIIVPLSTLSNWTYEFDKWAPSVVKISYKGTPAMRRSLVPQLRSGKFNVLLTTYEYI 817
Score = 48 (22.0 bits), Expect = 4.6e-08, Sum P(4) = 4.6e-08
Identities = 18/75 (24%), Positives = 32/75 (42%)
Query: 508 FPYAQPSTLNKKELDGVKEDMEAEIKTRSMASHLLKLSPESIQSNSSDCKSHVDD-EPDI 566
+ A S + + D +ED E E + +L L P S + + D K ++ + D+
Sbjct: 611 YEVAPRSDSEESDSDYEEEDEEEESSRQDTEEKIL-LDPNSEEVSEKDAKQIIETAKQDV 669
Query: 567 CILEDISQPARSNQS 581
+ AR +QS
Sbjct: 670 DDEYSMQYSARGSQS 684
>WB|WBGene00004204 [details] [associations]
symbol:swsn-4 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0016817
"hydrolase activity, acting on acid anhydrides" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0016818 "hydrolase
activity, acting on acid anhydrides, in phosphorus-containing
anhydrides" evidence=IEA] [GO:0009792 "embryo development ending in
birth or egg hatching" evidence=IMP] [GO:0040010 "positive
regulation of growth rate" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0040035 "hermaphrodite genitalia development"
evidence=IMP] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 InterPro:IPR006576 InterPro:IPR014978
Pfam:PF00176 Pfam:PF00271 Pfam:PF00439 Pfam:PF07533 Pfam:PF08880
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 SMART:SM00592 SMART:SM00951 GO:GO:0005524
GO:GO:0005634 GO:GO:0009792 GO:GO:0040010 GO:GO:0006355
GO:GO:0003677 GO:GO:0040035 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 KO:K11647
GeneTree:ENSGT00550000074659 OMA:QKKYTIS InterPro:IPR013999
InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529 SMART:SM00573
PROSITE:PS51204 EMBL:Z68751 EMBL:Z68341 EMBL:AF230280 PIR:T20488
RefSeq:NP_502082.1 UniGene:Cel.23435 ProteinModelPortal:G5EF53
SMR:G5EF53 EnsemblMetazoa:F01G4.1 GeneID:178015
KEGG:cel:CELE_F01G4.1 CTD:178015 WormBase:F01G4.1 NextBio:899366
Uniprot:G5EF53
Length = 1474
Score = 115 (45.5 bits), Expect = 4.6e-08, Sum P(3) = 4.6e-08
Identities = 32/114 (28%), Positives = 53/114 (46%)
Query: 902 LAKVGWFRVVLDEAQSIKNHRTQVARACWGL-RAKRRWCLSGTPIQNAIDDLYSYFRFLR 960
L K+ W +++DE +KNH ++ G A+ R L+GTP+QN + +L++ FL
Sbjct: 649 LGKIRWKYMIIDEGHRLKNHNCKLTLMLNGFFHAQHRLLLTGTPLQNKLPELWALLNFLL 708
Query: 961 YDPFAVYKSFCSMIKVPISKNPVKG----------YKKLQAVLKTIMLRRTKGE 1004
F+ +F P + K ++L VL+ +LRR K E
Sbjct: 709 PSIFSSCGTFEQWFNAPFATTGEKVELNQEETMLIIRRLHKVLRPFLLRRLKKE 762
Score = 90 (36.7 bits), Expect = 4.6e-08, Sum P(3) = 4.6e-08
Identities = 22/44 (50%), Positives = 30/44 (68%)
Query: 667 LLRHQRI-ALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 709
LL+ +I L WMV ++L+ GILAD+ GLGKTI TI+L+
Sbjct: 532 LLKPYQIKGLEWMVSLYNNNLN---GILADEMGLGKTIQTISLV 572
Score = 65 (27.9 bits), Expect = 4.6e-08, Sum P(3) = 4.6e-08
Identities = 19/63 (30%), Positives = 32/63 (50%)
Query: 781 LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGS--SRTKDPCELAK--FDVVITTYSIV 836
LV+ P S L W E S ++ ++Y G+ +R + ++ K F+V++TTY V
Sbjct: 586 LVIVPLSTLSNWQNEFAKWAPS---VTTIIYKGTKDARRRVEGQIRKGAFNVLMTTYEYV 642
Query: 837 SME 839
E
Sbjct: 643 IKE 645
>ZFIN|ZDB-GENE-030131-5964 [details] [associations]
symbol:smarca2 "SWI/SNF related, matrix
associated, actin dependent regulator of chromatin, subfamily a,
member 2" species:7955 "Danio rerio" [GO:0016817 "hydrolase
activity, acting on acid anhydrides" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0016818 "hydrolase activity, acting on acid
anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
InterPro:IPR006576 InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271
Pfam:PF00439 Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00490
SMART:SM00592 SMART:SM00951 ZFIN:ZDB-GENE-030131-5964 GO:GO:0005524
GO:GO:0005634 GO:GO:0006355 GO:GO:0003677 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10
SUPFAM:SSF47370 PROSITE:PS00633 InterPro:IPR018359 KO:K11647
InterPro:IPR013999 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 SMART:SM00573 PROSITE:PS51204 CTD:6595
HOVERGEN:HBG056636 EMBL:BC060676 IPI:IPI00483012 RefSeq:NP_997881.1
UniGene:Dr.93531 ProteinModelPortal:Q6P9P2 SMR:Q6P9P2 STRING:Q6P9P2
GeneID:334032 KEGG:dre:334032 InParanoid:Q6P9P2 NextBio:20810237
ArrayExpress:Q6P9P2 Uniprot:Q6P9P2
Length = 1568
Score = 114 (45.2 bits), Expect = 4.7e-08, Sum P(4) = 4.7e-08
Identities = 35/116 (30%), Positives = 55/116 (47%)
Query: 902 LAKVGWFRVVLDEAQSIKNHR---TQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRF 958
LAK+ W +++DE +KNH TQV + A RR L+GTP+QN + +L++ F
Sbjct: 842 LAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYV--APRRLLLTGTPLQNKLPELWALLNF 899
Query: 959 LRYDPFAVYKSFCSMIKVPIS----------KNPVKGYKKLQAVLKTIMLRRTKGE 1004
L F +F P + + + ++L VL+ +LRR K E
Sbjct: 900 LLPTIFKSCSTFEQWFNAPFAMTGERVDLNEEETILIIRRLHKVLRPFLLRRLKKE 955
Score = 91 (37.1 bits), Expect = 4.7e-08, Sum P(4) = 4.7e-08
Identities = 22/43 (51%), Positives = 28/43 (65%)
Query: 667 LLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 709
L ++Q L WMV ++L+ GILAD+ GLGKTI TI LI
Sbjct: 726 LKQYQIQGLEWMVSLYNNNLN---GILADEMGLGKTIQTIGLI 765
Score = 61 (26.5 bits), Expect = 4.7e-08, Sum P(4) = 4.7e-08
Identities = 20/60 (33%), Positives = 30/60 (50%)
Query: 781 LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSS---RTKDP-CELAKFDVVITTYSIV 836
L++ P S L W EL +K S+ + Y G+ R+ P KF+V+ITTY +
Sbjct: 779 LIIVPLSTLSNWVYEL-DKWAP--SIVKIAYKGTPSMRRSLVPQLRSGKFNVLITTYEYI 835
Score = 50 (22.7 bits), Expect = 4.7e-08, Sum P(4) = 4.7e-08
Identities = 15/47 (31%), Positives = 20/47 (42%)
Query: 605 PVVTSQHSSYSDYPGYPGVPLTGLGGMKSKASDERLILQVAMQGISQ 651
P S HS PG P VP T G + S E + M+G+ +
Sbjct: 36 PSPGSVHSMMGPSPGPPSVPHTMQGQGAGEYSQEMHPMHKPMEGMHE 82
>UNIPROTKB|J9P5P2 [details] [associations]
symbol:SMARCA2 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
InterPro:IPR006576 InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271
Pfam:PF00439 Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00490
SMART:SM00592 SMART:SM00951 GO:GO:0005524 GO:GO:0005634
GO:GO:0006355 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 KO:K11647
GeneTree:ENSGT00550000074659 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
CTD:6595 OMA:PQEGMHQ EMBL:AAEX03000600 RefSeq:XP_850159.1
Ensembl:ENSCAFT00000046362 GeneID:476335 KEGG:cfa:476335
Uniprot:J9P5P2
Length = 1574
Score = 113 (44.8 bits), Expect = 4.8e-08, Sum P(4) = 4.8e-08
Identities = 35/116 (30%), Positives = 55/116 (47%)
Query: 902 LAKVGWFRVVLDEAQSIKNHR---TQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRF 958
LAK+ W +++DE +KNH TQV + A RR L+GTP+QN + +L++ F
Sbjct: 824 LAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYV--APRRILLTGTPLQNKLPELWALLNF 881
Query: 959 LRYDPFAVYKSFCSMIKVPIS----------KNPVKGYKKLQAVLKTIMLRRTKGE 1004
L F +F P + + + ++L VL+ +LRR K E
Sbjct: 882 LLPTIFKSCSTFEQWFNAPFAMTGERVDLNEEETILIIRRLHKVLRPFLLRRLKKE 937
Score = 98 (39.6 bits), Expect = 4.8e-08, Sum P(4) = 4.8e-08
Identities = 23/43 (53%), Positives = 30/43 (69%)
Query: 668 LRHQRI-ALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 709
L+H ++ L WMV ++L+ GILAD+ GLGKTI TIALI
Sbjct: 708 LKHYQLQGLEWMVSLYNNNLN---GILADEMGLGKTIQTIALI 747
Score = 57 (25.1 bits), Expect = 4.8e-08, Sum P(4) = 4.8e-08
Identities = 16/57 (28%), Positives = 24/57 (42%)
Query: 781 LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDP-CELAKFDVVITTYSIV 836
L++ P S L W E S +S R+ P KF+V++TTY +
Sbjct: 761 LIIVPLSTLSNWTYEFDKWAPSVVKISYKGTPAMRRSLVPQLRSGKFNVLLTTYEYI 817
Score = 48 (22.0 bits), Expect = 4.8e-08, Sum P(4) = 4.8e-08
Identities = 18/75 (24%), Positives = 32/75 (42%)
Query: 508 FPYAQPSTLNKKELDGVKEDMEAEIKTRSMASHLLKLSPESIQSNSSDCKSHVDD-EPDI 566
+ A S + + D +ED E E + +L L P S + + D K ++ + D+
Sbjct: 611 YEVAPRSDSEESDSDYEEEDEEEESSRQDTEEKIL-LDPNSEEVSEKDAKQIIETAKQDV 669
Query: 567 CILEDISQPARSNQS 581
+ AR +QS
Sbjct: 670 DDEYSMQYSARGSQS 684
>MGI|MGI:1935129 [details] [associations]
symbol:Smarca5 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily a, member 5"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000183 "chromatin silencing at rDNA"
evidence=IDA] [GO:0000793 "condensed chromosome" evidence=ISO]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=ISO] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005524 "ATP
binding" evidence=ISO] [GO:0005634 "nucleus" evidence=ISO;IDA]
[GO:0005677 "chromatin silencing complex" evidence=IDA] [GO:0006200
"ATP catabolic process" evidence=ISO] [GO:0006302 "double-strand
break repair" evidence=IMP] [GO:0006333 "chromatin assembly or
disassembly" evidence=IDA] [GO:0006334 "nucleosome assembly"
evidence=ISO] [GO:0006338 "chromatin remodeling"
evidence=ISO;IGI;IDA] [GO:0006352 "DNA-dependent transcription,
initiation" evidence=ISO] [GO:0009790 "embryo development"
evidence=IMP] [GO:0016568 "chromatin modification" evidence=IEA]
[GO:0016584 "nucleosome positioning" evidence=ISO] [GO:0016589
"NURF complex" evidence=ISO] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0016817 "hydrolase activity, acting on acid
anhydrides" evidence=IEA] [GO:0016818 "hydrolase activity, acting
on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0016887 "ATPase activity" evidence=ISO]
[GO:0031213 "RSF complex" evidence=ISO] [GO:0031491 "nucleosome
binding" evidence=IEA] [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=ISO] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=IMP;TAS] InterPro:IPR000330
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR009057
InterPro:IPR015194 InterPro:IPR015195 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 Pfam:PF13892
PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490 SMART:SM00717
MGI:MGI:1935129 GO:GO:0005524 GO:GO:0045893 GO:GO:0005730
GO:GO:0003677 GO:GO:0006352 GO:GO:0016887 Gene3D:1.10.10.60
SUPFAM:SSF46689 GO:GO:0006338 GO:GO:0009790 GO:GO:0043596
GO:GO:0006333 InterPro:IPR017884 PROSITE:PS51293 GO:GO:0000183
GO:GO:0006302 GO:GO:0004386 GO:GO:0000793 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0031491
GO:GO:0043044 GO:GO:0016584 GO:GO:0006334 GO:GO:0005677
GO:GO:0016589 GeneTree:ENSGT00680000100002 HOGENOM:HOG000192862
KO:K11654 SUPFAM:SSF101224 OMA:EDYCHWR GO:GO:0031213
HOVERGEN:HBG056329 OrthoDB:EOG44J2H9 CTD:8467 EMBL:AF375046
EMBL:AF325921 EMBL:BC021922 EMBL:BC053069 EMBL:AK039811
EMBL:AK052320 IPI:IPI00396739 RefSeq:NP_444354.2 UniGene:Mm.246803
ProteinModelPortal:Q91ZW3 SMR:Q91ZW3 DIP:DIP-36073N IntAct:Q91ZW3
MINT:MINT-1867515 STRING:Q91ZW3 PhosphoSite:Q91ZW3 PaxDb:Q91ZW3
PRIDE:Q91ZW3 Ensembl:ENSMUST00000043359 GeneID:93762 KEGG:mmu:93762
UCSC:uc009mja.1 InParanoid:Q91ZW3 NextBio:351651 Bgee:Q91ZW3
Genevestigator:Q91ZW3 GermOnline:ENSMUSG00000031715 Uniprot:Q91ZW3
Length = 1051
Score = 133 (51.9 bits), Expect = 5.3e-08, Sum P(4) = 5.3e-08
Identities = 32/101 (31%), Positives = 50/101 (49%)
Query: 904 KVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDP 963
K W +V+DEA IKN +++++ + R L+GTP+QN + +L+S FL D
Sbjct: 298 KFNWRYLVIDEAHRIKNEKSKLSEIVREFKTTNRLLLTGTPLQNNLHELWSLLNFLLPDV 357
Query: 964 FAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGE 1004
F F S K ++L VL+ +LRR K +
Sbjct: 358 FNSADDFDSWFDTNNCLGDQKLVERLHMVLRPFLLRRIKAD 398
Score = 79 (32.9 bits), Expect = 5.3e-08, Sum P(4) = 5.3e-08
Identities = 17/43 (39%), Positives = 29/43 (67%)
Query: 668 LRHQRI-ALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 709
LR ++ L+W++ + ++ GILAD+ GLGKT+ TI+L+
Sbjct: 179 LRDYQVRGLNWLISLYENGIN---GILADEMGLGKTLQTISLL 218
Score = 53 (23.7 bits), Expect = 5.3e-08, Sum P(4) = 5.3e-08
Identities = 14/61 (22%), Positives = 30/61 (49%)
Query: 781 LVVCPTSVLRQWAEELRNKVTSKGSLSVL--VYHGSSRTKDPCELAKFDVVITTYSIVSM 838
+V+ P S L W E + V + S+ ++ ++ +D ++DV +T+Y ++
Sbjct: 232 MVLVPKSTLHNWMSEFKKWVPTLRSVCLIGDKEQRAAFVRDVLLPGEWDVCVTSYEMLIK 291
Query: 839 E 839
E
Sbjct: 292 E 292
Score = 42 (19.8 bits), Expect = 5.3e-08, Sum P(4) = 5.3e-08
Identities = 14/40 (35%), Positives = 19/40 (47%)
Query: 452 SLLSQNQVVHAK---EEHEDLILESKRA-RFCQEICDGSS 487
+LLS H + EE E+L+ ES +A C D S
Sbjct: 133 NLLSVGDYRHRRTEQEEDEELLTESSKATNVCTRFEDSPS 172
>RGD|1308832 [details] [associations]
symbol:Smarca5 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily a, member 5"
species:10116 "Rattus norvegicus" [GO:0000183 "chromatin silencing
at rDNA" evidence=ISO] [GO:0000793 "condensed chromosome"
evidence=ISO] [GO:0003677 "DNA binding" evidence=IEA;ISO]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA;ISO] [GO:0005634 "nucleus" evidence=IEA;ISO]
[GO:0005677 "chromatin silencing complex" evidence=ISO] [GO:0005730
"nucleolus" evidence=ISO] [GO:0006200 "ATP catabolic process"
evidence=ISO] [GO:0006302 "double-strand break repair"
evidence=ISO] [GO:0006333 "chromatin assembly or disassembly"
evidence=ISO] [GO:0006334 "nucleosome assembly" evidence=ISO]
[GO:0006338 "chromatin remodeling" evidence=ISO] [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISO] [GO:0009790
"embryo development" evidence=ISO] [GO:0016584 "nucleosome
positioning" evidence=ISO] [GO:0016589 "NURF complex" evidence=ISO]
[GO:0016887 "ATPase activity" evidence=ISO] [GO:0031213 "RSF
complex" evidence=ISO] [GO:0031491 "nucleosome binding"
evidence=IEA] [GO:0043044 "ATP-dependent chromatin remodeling"
evidence=IEA;ISO] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=ISO] [GO:0043596 "nuclear
replication fork" evidence=ISO] [GO:0042393 "histone binding"
evidence=ISO] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR009057 InterPro:IPR015194
InterPro:IPR015195 InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 RGD:1308832 GO:GO:0005524 GO:GO:0003677
Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR017884
PROSITE:PS51293 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0016585 GO:GO:0031491 GO:GO:0043044
GeneTree:ENSGT00680000100002 SUPFAM:SSF101224 OMA:EDYCHWR
IPI:IPI00359419 PRIDE:F1LNL2 Ensembl:ENSRNOT00000024568
UCSC:RGD:1308832 ArrayExpress:F1LNL2 Uniprot:F1LNL2
Length = 1051
Score = 133 (51.9 bits), Expect = 5.3e-08, Sum P(4) = 5.3e-08
Identities = 32/101 (31%), Positives = 50/101 (49%)
Query: 904 KVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDP 963
K W +V+DEA IKN +++++ + R L+GTP+QN + +L+S FL D
Sbjct: 298 KFNWRYLVIDEAHRIKNEKSKLSEIVREFKTTNRLLLTGTPLQNNLHELWSLLNFLLPDV 357
Query: 964 FAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGE 1004
F F S K ++L VL+ +LRR K +
Sbjct: 358 FNSADDFDSWFDTNNCLGDQKLVERLHMVLRPFLLRRIKAD 398
Score = 79 (32.9 bits), Expect = 5.3e-08, Sum P(4) = 5.3e-08
Identities = 17/43 (39%), Positives = 29/43 (67%)
Query: 668 LRHQRI-ALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 709
LR ++ L+W++ + ++ GILAD+ GLGKT+ TI+L+
Sbjct: 179 LRDYQVRGLNWLISLYENGIN---GILADEMGLGKTLQTISLL 218
Score = 53 (23.7 bits), Expect = 5.3e-08, Sum P(4) = 5.3e-08
Identities = 14/61 (22%), Positives = 30/61 (49%)
Query: 781 LVVCPTSVLRQWAEELRNKVTSKGSLSVL--VYHGSSRTKDPCELAKFDVVITTYSIVSM 838
+V+ P S L W E + V + S+ ++ ++ +D ++DV +T+Y ++
Sbjct: 232 MVLVPKSTLHNWMSEFKRWVPTLRSVCLIGDKEQRAAFVRDVLLPGEWDVCVTSYEMLIK 291
Query: 839 E 839
E
Sbjct: 292 E 292
Score = 42 (19.8 bits), Expect = 5.3e-08, Sum P(4) = 5.3e-08
Identities = 14/40 (35%), Positives = 19/40 (47%)
Query: 452 SLLSQNQVVHAK---EEHEDLILESKRA-RFCQEICDGSS 487
+LLS H + EE E+L+ ES +A C D S
Sbjct: 133 NLLSVGDYRHRRTEQEEDEELLTESSKATNVCTRFEDSPS 172
>UNIPROTKB|F1N052 [details] [associations]
symbol:SMARCA5 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0043596 "nuclear replication fork" evidence=IEA]
[GO:0043044 "ATP-dependent chromatin remodeling" evidence=IEA]
[GO:0042393 "histone binding" evidence=IEA] [GO:0031213 "RSF
complex" evidence=IEA] [GO:0016887 "ATPase activity" evidence=IEA]
[GO:0016589 "NURF complex" evidence=IEA] [GO:0016584 "nucleosome
positioning" evidence=IEA] [GO:0009790 "embryo development"
evidence=IEA] [GO:0006352 "DNA-dependent transcription, initiation"
evidence=IEA] [GO:0006334 "nucleosome assembly" evidence=IEA]
[GO:0006302 "double-strand break repair" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005677 "chromatin silencing complex"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0000793 "condensed chromosome"
evidence=IEA] [GO:0000183 "chromatin silencing at rDNA"
evidence=IEA] [GO:0031491 "nucleosome binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] InterPro:IPR000330
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR009057
InterPro:IPR015194 InterPro:IPR015195 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 Pfam:PF13892
PROSITE:PS51194 SMART:SM00490 SMART:SM00717 GO:GO:0005524
GO:GO:0005730 GO:GO:0003677 GO:GO:0006352 GO:GO:0016887
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0009790 GO:GO:0043596
InterPro:IPR017884 PROSITE:PS51293 GO:GO:0000183 GO:GO:0006302
GO:GO:0004386 GO:GO:0000793 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0031491 GO:GO:0043044 GO:GO:0016584
GO:GO:0006334 GO:GO:0005677 GO:GO:0016589
GeneTree:ENSGT00680000100002 SUPFAM:SSF101224 OMA:EDYCHWR
GO:GO:0031213 EMBL:DAAA02044371 IPI:IPI00868566 UniGene:Bt.103096
Ensembl:ENSBTAT00000004408 Uniprot:F1N052
Length = 1052
Score = 133 (51.9 bits), Expect = 5.3e-08, Sum P(4) = 5.3e-08
Identities = 32/101 (31%), Positives = 50/101 (49%)
Query: 904 KVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDP 963
K W +V+DEA IKN +++++ + R L+GTP+QN + +L+S FL D
Sbjct: 299 KFNWRYLVIDEAHRIKNEKSKLSEIVREFKTTNRLLLTGTPLQNNLHELWSLLNFLLPDV 358
Query: 964 FAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGE 1004
F F S K ++L VL+ +LRR K +
Sbjct: 359 FNSADDFDSWFDTNNCLGDQKLVERLHMVLRPFLLRRIKAD 399
Score = 79 (32.9 bits), Expect = 5.3e-08, Sum P(4) = 5.3e-08
Identities = 17/43 (39%), Positives = 29/43 (67%)
Query: 668 LRHQRI-ALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 709
LR ++ L+W++ + ++ GILAD+ GLGKT+ TI+L+
Sbjct: 180 LRDYQVRGLNWLISLYENGIN---GILADEMGLGKTLQTISLL 219
Score = 53 (23.7 bits), Expect = 5.3e-08, Sum P(4) = 5.3e-08
Identities = 14/61 (22%), Positives = 30/61 (49%)
Query: 781 LVVCPTSVLRQWAEELRNKVTSKGSLSVL--VYHGSSRTKDPCELAKFDVVITTYSIVSM 838
+V+ P S L W E + V + S+ ++ ++ +D ++DV +T+Y ++
Sbjct: 233 MVLVPKSTLHNWMSEFKRWVPTLRSVCLIGDKEQRAAFVRDVLLPGEWDVCVTSYEMLIK 292
Query: 839 E 839
E
Sbjct: 293 E 293
Score = 42 (19.8 bits), Expect = 5.3e-08, Sum P(4) = 5.3e-08
Identities = 14/40 (35%), Positives = 19/40 (47%)
Query: 452 SLLSQNQVVHAK---EEHEDLILESKRA-RFCQEICDGSS 487
+LLS H + EE E+L+ ES +A C D S
Sbjct: 134 NLLSVGDYRHRRTEQEEDEELLTESSKATNVCTRFEDSPS 173
>UNIPROTKB|E2QWV0 [details] [associations]
symbol:SMARCA5 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0043596 "nuclear replication fork"
evidence=IEA] [GO:0043044 "ATP-dependent chromatin remodeling"
evidence=IEA] [GO:0042393 "histone binding" evidence=IEA]
[GO:0031213 "RSF complex" evidence=IEA] [GO:0016887 "ATPase
activity" evidence=IEA] [GO:0016589 "NURF complex" evidence=IEA]
[GO:0016584 "nucleosome positioning" evidence=IEA] [GO:0009790
"embryo development" evidence=IEA] [GO:0006352 "DNA-dependent
transcription, initiation" evidence=IEA] [GO:0006334 "nucleosome
assembly" evidence=IEA] [GO:0006302 "double-strand break repair"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0005677
"chromatin silencing complex" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0000793 "condensed chromosome" evidence=IEA] [GO:0000183
"chromatin silencing at rDNA" evidence=IEA] [GO:0031491 "nucleosome
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR009057 InterPro:IPR015194
InterPro:IPR015195 InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 GO:GO:0005524 GO:GO:0005730
GO:GO:0003677 GO:GO:0006352 GO:GO:0016887 Gene3D:1.10.10.60
SUPFAM:SSF46689 GO:GO:0009790 GO:GO:0043596 InterPro:IPR017884
PROSITE:PS51293 GO:GO:0000183 GO:GO:0006302 GO:GO:0004386
GO:GO:0000793 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0031491 GO:GO:0043044 GO:GO:0016584 GO:GO:0006334
GO:GO:0005677 GO:GO:0016589 GeneTree:ENSGT00680000100002 KO:K11654
SUPFAM:SSF101224 OMA:EDYCHWR GO:GO:0031213 CTD:8467
EMBL:AAEX03010002 RefSeq:XP_532676.1 ProteinModelPortal:E2QWV0
Ensembl:ENSCAFT00000012062 GeneID:475451 KEGG:cfa:475451
NextBio:20851293 Uniprot:E2QWV0
Length = 1052
Score = 133 (51.9 bits), Expect = 5.3e-08, Sum P(4) = 5.3e-08
Identities = 32/101 (31%), Positives = 50/101 (49%)
Query: 904 KVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDP 963
K W +V+DEA IKN +++++ + R L+GTP+QN + +L+S FL D
Sbjct: 299 KFNWRYLVIDEAHRIKNEKSKLSEIVREFKTTNRLLLTGTPLQNNLHELWSLLNFLLPDV 358
Query: 964 FAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGE 1004
F F S K ++L VL+ +LRR K +
Sbjct: 359 FNSADDFDSWFDTNNCLGDQKLVERLHMVLRPFLLRRIKAD 399
Score = 79 (32.9 bits), Expect = 5.3e-08, Sum P(4) = 5.3e-08
Identities = 17/43 (39%), Positives = 29/43 (67%)
Query: 668 LRHQRI-ALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 709
LR ++ L+W++ + ++ GILAD+ GLGKT+ TI+L+
Sbjct: 180 LRDYQVRGLNWLISLYENGIN---GILADEMGLGKTLQTISLL 219
Score = 53 (23.7 bits), Expect = 5.3e-08, Sum P(4) = 5.3e-08
Identities = 14/61 (22%), Positives = 30/61 (49%)
Query: 781 LVVCPTSVLRQWAEELRNKVTSKGSLSVL--VYHGSSRTKDPCELAKFDVVITTYSIVSM 838
+V+ P S L W E + V + S+ ++ ++ +D ++DV +T+Y ++
Sbjct: 233 MVLVPKSTLHNWMSEFKRWVPTLRSVCLIGDKEQRAAFVRDVLLPGEWDVCVTSYEMLIK 292
Query: 839 E 839
E
Sbjct: 293 E 293
Score = 42 (19.8 bits), Expect = 5.3e-08, Sum P(4) = 5.3e-08
Identities = 14/40 (35%), Positives = 19/40 (47%)
Query: 452 SLLSQNQVVHAK---EEHEDLILESKRA-RFCQEICDGSS 487
+LLS H + EE E+L+ ES +A C D S
Sbjct: 134 NLLSVGDYRHRRTEQEEDEELLTESSKATNVCTRFEDSPS 173
>UNIPROTKB|O60264 [details] [associations]
symbol:SMARCA5 "SWI/SNF-related matrix-associated
actin-dependent regulator of chromatin subfamily A member 5"
species:9606 "Homo sapiens" [GO:0031491 "nucleosome binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0000183 "chromatin silencing at rDNA" evidence=IEA] [GO:0005677
"chromatin silencing complex" evidence=IEA] [GO:0006302
"double-strand break repair" evidence=IEA] [GO:0009790 "embryo
development" evidence=IEA] [GO:0006334 "nucleosome assembly"
evidence=IDA;TAS] [GO:0016887 "ATPase activity" evidence=IDA]
[GO:0003677 "DNA binding" evidence=IDA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0006338 "chromatin remodeling" evidence=IDA]
[GO:0006352 "DNA-dependent transcription, initiation" evidence=IDA]
[GO:0016584 "nucleosome positioning" evidence=IDA] [GO:0031213 "RSF
complex" evidence=IPI] [GO:0042393 "histone binding" evidence=IDA]
[GO:0005524 "ATP binding" evidence=IDA] [GO:0000793 "condensed
chromosome" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0016589 "NURF complex" evidence=IDA] [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0034080
"CENP-A containing nucleosome assembly at centromere" evidence=TAS]
[GO:0043596 "nuclear replication fork" evidence=IDA] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=IMP] [GO:0006200 "ATP
catabolic process" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR009057 InterPro:IPR015194
InterPro:IPR015195 InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 Pfam:PF13892 PROSITE:PS00690
PROSITE:PS51194 SMART:SM00490 SMART:SM00717 GO:GO:0005524
Reactome:REACT_115566 GO:GO:0005654 GO:GO:0005730 GO:GO:0003677
GO:GO:0006352 GO:GO:0006357 GO:GO:0016887 Gene3D:1.10.10.60
SUPFAM:SSF46689 GO:GO:0009790 InterPro:IPR017884 PROSITE:PS51293
GO:GO:0000183 GO:GO:0006302 GO:GO:0004386 GO:GO:0000793
GO:GO:0034080 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0031491 GO:GO:0016584 GO:GO:0005677
GO:GO:0016589 HOGENOM:HOG000192862 KO:K11654 SUPFAM:SSF101224
OMA:EDYCHWR GO:GO:0031213 HOVERGEN:HBG056329 OrthoDB:EOG44J2H9
EMBL:AB010882 EMBL:BC023144 IPI:IPI00297211 RefSeq:NP_003592.3
UniGene:Hs.558422 ProteinModelPortal:O60264 SMR:O60264
IntAct:O60264 MINT:MINT-2981772 STRING:O60264 PhosphoSite:O60264
PaxDb:O60264 PeptideAtlas:O60264 PRIDE:O60264 DNASU:8467
Ensembl:ENST00000283131 GeneID:8467 KEGG:hsa:8467 UCSC:uc003ijg.3
CTD:8467 GeneCards:GC04P144434 HGNC:HGNC:11101 HPA:CAB005227
HPA:HPA008751 MIM:603375 neXtProt:NX_O60264 PharmGKB:PA35951
InParanoid:O60264 PhylomeDB:O60264 GenomeRNAi:8467 NextBio:31688
ArrayExpress:O60264 Bgee:O60264 CleanEx:HS_SMARCA5
Genevestigator:O60264 GermOnline:ENSG00000153147 Uniprot:O60264
Length = 1052
Score = 133 (51.9 bits), Expect = 5.3e-08, Sum P(4) = 5.3e-08
Identities = 32/101 (31%), Positives = 50/101 (49%)
Query: 904 KVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDP 963
K W +V+DEA IKN +++++ + R L+GTP+QN + +L+S FL D
Sbjct: 299 KFNWRYLVIDEAHRIKNEKSKLSEIVREFKTTNRLLLTGTPLQNNLHELWSLLNFLLPDV 358
Query: 964 FAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGE 1004
F F S K ++L VL+ +LRR K +
Sbjct: 359 FNSADDFDSWFDTNNCLGDQKLVERLHMVLRPFLLRRIKAD 399
Score = 79 (32.9 bits), Expect = 5.3e-08, Sum P(4) = 5.3e-08
Identities = 17/43 (39%), Positives = 29/43 (67%)
Query: 668 LRHQRI-ALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 709
LR ++ L+W++ + ++ GILAD+ GLGKT+ TI+L+
Sbjct: 180 LRDYQVRGLNWLISLYENGIN---GILADEMGLGKTLQTISLL 219
Score = 53 (23.7 bits), Expect = 5.3e-08, Sum P(4) = 5.3e-08
Identities = 14/61 (22%), Positives = 30/61 (49%)
Query: 781 LVVCPTSVLRQWAEELRNKVTSKGSLSVL--VYHGSSRTKDPCELAKFDVVITTYSIVSM 838
+V+ P S L W E + V + S+ ++ ++ +D ++DV +T+Y ++
Sbjct: 233 MVLVPKSTLHNWMSEFKRWVPTLRSVCLIGDKEQRAAFVRDVLLPGEWDVCVTSYEMLIK 292
Query: 839 E 839
E
Sbjct: 293 E 293
Score = 42 (19.8 bits), Expect = 5.3e-08, Sum P(4) = 5.3e-08
Identities = 14/40 (35%), Positives = 19/40 (47%)
Query: 452 SLLSQNQVVHAK---EEHEDLILESKRA-RFCQEICDGSS 487
+LLS H + EE E+L+ ES +A C D S
Sbjct: 134 NLLSVGDYRHRRTEQEEDEELLTESSKATNVCTRFEDSPS 173
>UNIPROTKB|F1RRG9 [details] [associations]
symbol:SMARCA5 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0043596 "nuclear replication fork" evidence=IEA]
[GO:0043044 "ATP-dependent chromatin remodeling" evidence=IEA]
[GO:0042393 "histone binding" evidence=IEA] [GO:0031213 "RSF
complex" evidence=IEA] [GO:0016887 "ATPase activity" evidence=IEA]
[GO:0016589 "NURF complex" evidence=IEA] [GO:0016584 "nucleosome
positioning" evidence=IEA] [GO:0009790 "embryo development"
evidence=IEA] [GO:0006352 "DNA-dependent transcription, initiation"
evidence=IEA] [GO:0006334 "nucleosome assembly" evidence=IEA]
[GO:0006302 "double-strand break repair" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005677 "chromatin silencing complex"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0000793 "condensed chromosome"
evidence=IEA] [GO:0000183 "chromatin silencing at rDNA"
evidence=IEA] [GO:0031491 "nucleosome binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] InterPro:IPR000330
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR009057
InterPro:IPR015194 InterPro:IPR015195 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 Pfam:PF13892
PROSITE:PS51194 SMART:SM00490 SMART:SM00717 GO:GO:0005524
GO:GO:0005730 GO:GO:0003677 GO:GO:0006352 GO:GO:0016887
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0009790 GO:GO:0043596
InterPro:IPR017884 PROSITE:PS51293 GO:GO:0000183 GO:GO:0006302
GO:GO:0004386 GO:GO:0000793 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0031491 GO:GO:0043044 GO:GO:0016584
GO:GO:0006334 GO:GO:0005677 GO:GO:0016589
GeneTree:ENSGT00680000100002 KO:K11654 SUPFAM:SSF101224 OMA:EDYCHWR
GO:GO:0031213 CTD:8467 EMBL:CU463195 RefSeq:XP_003129222.2
UniGene:Ssc.97261 Ensembl:ENSSSCT00000009907 GeneID:100188903
KEGG:ssc:100188903 ArrayExpress:F1RRG9 Uniprot:F1RRG9
Length = 1052
Score = 133 (51.9 bits), Expect = 5.3e-08, Sum P(4) = 5.3e-08
Identities = 32/101 (31%), Positives = 50/101 (49%)
Query: 904 KVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDP 963
K W +V+DEA IKN +++++ + R L+GTP+QN + +L+S FL D
Sbjct: 299 KFNWRYLVIDEAHRIKNEKSKLSEIVREFKTTNRLLLTGTPLQNNLHELWSLLNFLLPDV 358
Query: 964 FAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGE 1004
F F S K ++L VL+ +LRR K +
Sbjct: 359 FNSADDFDSWFDTNNCLGDQKLVERLHMVLRPFLLRRIKAD 399
Score = 79 (32.9 bits), Expect = 5.3e-08, Sum P(4) = 5.3e-08
Identities = 17/43 (39%), Positives = 29/43 (67%)
Query: 668 LRHQRI-ALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 709
LR ++ L+W++ + ++ GILAD+ GLGKT+ TI+L+
Sbjct: 180 LRDYQVRGLNWLISLYENGIN---GILADEMGLGKTLQTISLL 219
Score = 53 (23.7 bits), Expect = 5.3e-08, Sum P(4) = 5.3e-08
Identities = 14/61 (22%), Positives = 30/61 (49%)
Query: 781 LVVCPTSVLRQWAEELRNKVTSKGSLSVL--VYHGSSRTKDPCELAKFDVVITTYSIVSM 838
+V+ P S L W E + V + S+ ++ ++ +D ++DV +T+Y ++
Sbjct: 233 MVLVPKSTLHNWMSEFKRWVPTLRSVCLIGDKEQRAAFVRDVLLPGEWDVCVTSYEMLIK 292
Query: 839 E 839
E
Sbjct: 293 E 293
Score = 42 (19.8 bits), Expect = 5.3e-08, Sum P(4) = 5.3e-08
Identities = 14/40 (35%), Positives = 19/40 (47%)
Query: 452 SLLSQNQVVHAK---EEHEDLILESKRA-RFCQEICDGSS 487
+LLS H + EE E+L+ ES +A C D S
Sbjct: 134 NLLSVGDYRHRRTEQEEDEELLTESSKATNVCTRFEDSPS 173
>UNIPROTKB|E1C2F7 [details] [associations]
symbol:E1C2F7 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000790 "nuclear
chromatin" evidence=IEA] [GO:0001105 "RNA polymerase II
transcription coactivator activity" evidence=IEA] [GO:0008285
"negative regulation of cell proliferation" evidence=IEA]
[GO:0016514 "SWI/SNF complex" evidence=IEA] [GO:0030308 "negative
regulation of cell growth" evidence=IEA] [GO:0035887 "aortic smooth
muscle cell differentiation" evidence=IEA] [GO:0044212
"transcription regulatory region DNA binding" evidence=IEA]
[GO:0045111 "intermediate filament cytoskeleton" evidence=IEA]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0071564 "npBAF complex" evidence=IEA] [GO:0071565
"nBAF complex" evidence=IEA] [GO:0071778 "WINAC complex"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 InterPro:IPR006576 InterPro:IPR014978
Pfam:PF00176 Pfam:PF00271 Pfam:PF00439 Pfam:PF07533 Pfam:PF08880
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 SMART:SM00592 SMART:SM00951 GO:GO:0005524
GO:GO:0045892 GO:GO:0008285 GO:GO:0030308 GO:GO:0045944
GO:GO:0044212 GO:GO:0045111 GO:GO:0000790 GO:GO:0071564
GO:GO:0016514 GO:GO:0071565 GO:GO:0004386 GO:GO:0001105
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10
SUPFAM:SSF47370 PROSITE:PS00633 InterPro:IPR018359 GO:GO:0071778
GeneTree:ENSGT00550000074659 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
OMA:PQEGMHQ EMBL:AADN02068434 EMBL:AADN02068435 EMBL:AADN02068436
EMBL:AADN02068437 EMBL:AADN02068438 EMBL:AADN02068439
EMBL:AADN02068440 EMBL:AADN02068441 IPI:IPI00583413
Ensembl:ENSGALT00000016528 Uniprot:E1C2F7
Length = 1546
Score = 113 (44.8 bits), Expect = 5.6e-08, Sum P(4) = 5.6e-08
Identities = 35/116 (30%), Positives = 55/116 (47%)
Query: 902 LAKVGWFRVVLDEAQSIKNHR---TQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRF 958
LAK+ W +++DE +KNH TQV + A RR L+GTP+QN + +L++ F
Sbjct: 814 LAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYV--APRRILLTGTPLQNKLPELWALLNF 871
Query: 959 LRYDPFAVYKSFCSMIKVPIS----------KNPVKGYKKLQAVLKTIMLRRTKGE 1004
L F +F P + + + ++L VL+ +LRR K E
Sbjct: 872 LLPTIFKSCSTFEQWFNAPFAMTGERVDLNEEETILIIRRLHKVLRPFLLRRLKKE 927
Score = 98 (39.6 bits), Expect = 5.6e-08, Sum P(4) = 5.6e-08
Identities = 23/43 (53%), Positives = 30/43 (69%)
Query: 668 LRHQRI-ALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 709
L+H ++ L WMV ++L+ GILAD+ GLGKTI TIALI
Sbjct: 698 LKHYQLQGLEWMVSLYNNNLN---GILADEMGLGKTIQTIALI 737
Score = 57 (25.1 bits), Expect = 5.6e-08, Sum P(4) = 5.6e-08
Identities = 16/57 (28%), Positives = 24/57 (42%)
Query: 781 LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDP-CELAKFDVVITTYSIV 836
L++ P S L W E S +S R+ P KF+V++TTY +
Sbjct: 751 LIIVPLSTLSNWTYEFDKWAPSVVKISYKGTPAMRRSLVPQLRSGKFNVLLTTYEYI 807
Score = 47 (21.6 bits), Expect = 5.6e-08, Sum P(4) = 5.6e-08
Identities = 20/84 (23%), Positives = 36/84 (42%)
Query: 499 LNLNGSRQYFPYAQPSTLNKKELDGVKEDMEAEIKTRSMASHLLKLSPESIQSNSSDCKS 558
L +N + P + + E + +ED E E +R A + L P S + + D K
Sbjct: 594 LEMNPGYEVAPRSDSEDESGSEYE--EEDDEEE-SSRLEADEKILLDPNSEEVSEKDAKQ 650
Query: 559 HVDD-EPDICILEDISQPARSNQS 581
++ + D+ + AR +QS
Sbjct: 651 IIETAKQDVDDEYSMQYSARGSQS 674
Score = 38 (18.4 bits), Expect = 4.2e-07, Sum P(4) = 4.2e-07
Identities = 9/20 (45%), Positives = 9/20 (45%)
Query: 605 PVVTSQHSSYSDYPGYPGVP 624
P S HS PG P VP
Sbjct: 35 PSPGSVHSMMGPSPGPPSVP 54
>UNIPROTKB|I3LFY4 [details] [associations]
symbol:ERCC6L "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001440
InterPro:IPR001650 InterPro:IPR011990 Pfam:PF00176 Pfam:PF00271
Pfam:PF00515 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003677 Gene3D:1.25.40.10 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GeneTree:ENSGT00590000083118
OMA:TKNGDLE EMBL:CU469343 Ensembl:ENSSSCT00000023457 Uniprot:I3LFY4
Length = 1225
Score = 126 (49.4 bits), Expect = 5.8e-08, Sum P(3) = 5.8e-08
Identities = 39/111 (35%), Positives = 55/111 (49%)
Query: 907 WFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFL-RYDPFA 965
W V+LDEA IK T+ A + A+ R L+GTPIQN + +L+S F F +
Sbjct: 200 WDYVILDEAHKIKTSSTKSAICARAIPARNRILLTGTPIQNNLQELWSLFDFACQGSLLG 259
Query: 966 VYKSFCSMIKVPISKNPVK---------GYK---KLQAVLKTIMLRRTKGE 1004
K+F + PI++ K G+K L A++K LRRTK E
Sbjct: 260 TLKTFKMEYENPITRAREKDATPGEKALGFKISENLMAIIKPYFLRRTKEE 310
Score = 74 (31.1 bits), Expect = 5.8e-08, Sum P(3) = 5.8e-08
Identities = 14/20 (70%), Positives = 16/20 (80%)
Query: 690 GGILADDQGLGKTISTIALI 709
GGILADD GLGKT+ IA +
Sbjct: 95 GGILADDMGLGKTVQIIAFL 114
Score = 66 (28.3 bits), Expect = 5.8e-08, Sum P(3) = 5.8e-08
Identities = 18/60 (30%), Positives = 31/60 (51%)
Query: 781 LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCELAKFD----VVITTYSIV 836
L++ PTS++ W LR V + V +HG S+ + L++ V+ITTY ++
Sbjct: 127 LLIMPTSLISTW---LREFVKWTPGMRVKTFHGPSKDERTRNLSRIQQRNGVIITTYQML 183
>UNIPROTKB|F1SCA0 [details] [associations]
symbol:BTAF1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR016024 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 OMA:TKQEGAI InterPro:IPR022707
Pfam:PF12054 GeneTree:ENSGT00630000089754 EMBL:CT868714
EMBL:CT954286 Ensembl:ENSSSCT00000011455 Uniprot:F1SCA0
Length = 1850
Score = 111 (44.1 bits), Expect = 5.9e-08, Sum P(5) = 5.9e-08
Identities = 27/68 (39%), Positives = 38/68 (55%)
Query: 911 VLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAVYKSF 970
+LDE IKN +T++++A L A R LSGTPIQN + +L+S F FL + F
Sbjct: 1403 ILDEGHVIKNGKTKLSKAVKQLTANYRIILSGTPIQNNVLELWSLFDFLMPGFLGTERQF 1462
Query: 971 CSMIKVPI 978
+ PI
Sbjct: 1463 AARYGKPI 1470
Score = 93 (37.8 bits), Expect = 5.9e-08, Sum P(5) = 5.9e-08
Identities = 28/91 (30%), Positives = 43/91 (47%)
Query: 619 GYPGVPLTGLGGMKSKASDERLILQVAMQGISQPNAEASAPDGVLAVPLLRHQRIALSWM 678
G P P ++ KA ER L+ + G N E P + L ++Q+ ++W+
Sbjct: 1223 GIPDPPNMSEELIQLKAK-ERHFLEQLLDGKKLENYEIPVP---INAELRKYQQDGVNWL 1278
Query: 679 VQKETSSLHCSGGILADDQGLGKTISTIALI 709
LH GIL DD GLGKT+ +I ++
Sbjct: 1279 AFLNKYKLH---GILCDDMGLGKTLQSICIL 1306
Score = 74 (31.1 bits), Expect = 5.9e-08, Sum P(5) = 5.9e-08
Identities = 16/63 (25%), Positives = 36/63 (57%)
Query: 780 TLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHG--SSRTKDPCELAKFDVVITTYSIVS 837
+LVVCP ++ W +E+ K S+ L+ L Y G + R + ++ + ++++ +Y +V
Sbjct: 1330 SLVVCPPTLTGHWVDEV-GKFCSREYLNPLHYTGPPTERVRLQHQVKRHNLIVASYDVVR 1388
Query: 838 MEV 840
++
Sbjct: 1389 NDI 1391
Score = 44 (20.5 bits), Expect = 5.9e-08, Sum P(5) = 5.9e-08
Identities = 11/51 (21%), Positives = 25/51 (49%)
Query: 464 EEHEDLILESKRARFCQEICDGSSSRSPIDGRHLSLNLNGSRQYFPYAQPS 514
++ E+ ++++ A+ ++ ++R+P + NL S PY PS
Sbjct: 886 KKEENTLVQNYAAQCIAKLLQQCTARTPCPNSKIVKNLCSSLCVDPYLTPS 936
Score = 39 (18.8 bits), Expect = 5.9e-08, Sum P(5) = 5.9e-08
Identities = 8/17 (47%), Positives = 11/17 (64%)
Query: 278 YINTGDTIFGDPSSFNF 294
YI DTI DP++ +F
Sbjct: 656 YIAGADTIMEDPATRDF 672
Score = 39 (18.8 bits), Expect = 7.5e-08, Sum P(4) = 7.5e-08
Identities = 18/64 (28%), Positives = 32/64 (50%)
Query: 517 NKKELDGVKEDMEAEIKTRSMASHLLKLSPESIQSNSSDCKSHVDDEPDIC-ILEDISQ- 574
N+K D D E E K R +A+ + I +++D K +D+ PD ++E+ ++
Sbjct: 231 NEKSNDST--DGEPEEKRRKIANVV-------INQSANDSKVLIDNIPDSSPLIEETNEW 281
Query: 575 PARS 578
P S
Sbjct: 282 PLES 285
Score = 37 (18.1 bits), Expect = 1.2e-07, Sum P(4) = 1.2e-07
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 464 EEHEDLILESKRARFCQEICD 484
EE + LES FC+E+C+
Sbjct: 276 EETNEWPLES----FCEELCN 292
>UNIPROTKB|F1N734 [details] [associations]
symbol:CHD6 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005634 "nucleus" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR002464 InterPro:IPR006576
Pfam:PF00176 Pfam:PF00271 Pfam:PF07533 PROSITE:PS00690
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
SMART:SM00717 Pfam:PF00385 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0003682 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR023780 OMA:CKWATME GeneTree:ENSGT00560000077077
EMBL:DAAA02036652 EMBL:DAAA02036653 EMBL:DAAA02036654
EMBL:DAAA02036655 IPI:IPI00924240 Ensembl:ENSBTAT00000061177
ArrayExpress:F1N734 Uniprot:F1N734
Length = 2720
Score = 143 (55.4 bits), Expect = 6.9e-08, Sum P(4) = 6.9e-08
Identities = 33/103 (32%), Positives = 56/103 (54%)
Query: 902 LAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRY 961
L K+ W V++DEA +KN ++ + + + L+GTP+QN++++L+S FL
Sbjct: 586 LKKIHWSCVIIDEAHRLKNRNCKLLEGLKLMALEHKVLLTGTPLQNSVEELFSLLNFLEP 645
Query: 962 DPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGE 1004
F +F ++ VK KLQ++LK +MLRR K +
Sbjct: 646 SQFPSETAFLEEFGDLKTEEQVK---KLQSILKPMMLRRLKDD 685
Score = 71 (30.1 bits), Expect = 6.9e-08, Sum P(4) = 6.9e-08
Identities = 28/100 (28%), Positives = 45/100 (45%)
Query: 760 GSSAKSFNFVEQAKGRPAAGT-LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGS--SR 816
G + +S F+ + R G L++ P S + W E R ++ +VYHGS SR
Sbjct: 490 GKTIQSITFLSEIFLRGIHGPFLIIAPLSTITNWEREFRTWT----EMNAIVYHGSQISR 545
Query: 817 T---------KD----PCE-LAKFDVVITTYSIVSMEVPK 842
+D P + KF VVITT+ ++ + P+
Sbjct: 546 QMIQQYEMVYRDAQGNPLSGVFKFHVVITTFEMILADCPE 585
Score = 65 (27.9 bits), Expect = 6.9e-08, Sum P(4) = 6.9e-08
Identities = 15/43 (34%), Positives = 25/43 (58%)
Query: 667 LLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 709
L +Q ++W++ + +C ILAD+ GLGKTI +I +
Sbjct: 460 LREYQLEGMNWLLFNWYNRKNC---ILADEMGLGKTIQSITFL 499
Score = 44 (20.5 bits), Expect = 6.9e-08, Sum P(4) = 6.9e-08
Identities = 21/78 (26%), Positives = 30/78 (38%)
Query: 43 DRVKSSPGDLSLRNLSQDELVQDVGSH----SNLQLQSGFKGDMRDIATYPLYGLEISGA 98
D SP D S Q+E ++DV SH L G + T G+E SG
Sbjct: 31 DYTSPSPFDHST---DQEEKIEDVASHCPAPKELYDVEEEAGPLFPRKTASHNGMEDSGG 87
Query: 99 ESGGLGDSSSQLEPTEQK 116
G+ + +P E +
Sbjct: 88 GGTGVKKKRKKKDPGEHE 105
>UNIPROTKB|D4AA07 [details] [associations]
symbol:Smarca4 "Transcription activator BRG1" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271 Pfam:PF07533
PROSITE:PS51194 SMART:SM00490 SMART:SM00592 RGD:621728
GO:GO:0005524 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
OrthoDB:EOG418BMJ IPI:IPI00915110 Ensembl:ENSRNOT00000060926
ArrayExpress:D4AA07 Uniprot:D4AA07
Length = 1262
Score = 114 (45.2 bits), Expect = 7.1e-08, Sum P(3) = 7.1e-08
Identities = 36/116 (31%), Positives = 54/116 (46%)
Query: 902 LAKVGWFRVVLDEAQSIKNHR---TQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRF 958
LAK+ W +++DE +KNH TQV + A RR L+GTP+QN + +L++ F
Sbjct: 669 LAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYV--APRRLLLTGTPLQNKLPELWALLNF 726
Query: 959 LRYDPFAVYKSFCSMIKVPISKNPVKG----------YKKLQAVLKTIMLRRTKGE 1004
L F +F P + K ++L VL+ +LRR K E
Sbjct: 727 LLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEETILIIRRLHKVLRPFLLRRLKKE 782
Score = 92 (37.4 bits), Expect = 7.1e-08, Sum P(3) = 7.1e-08
Identities = 22/43 (51%), Positives = 29/43 (67%)
Query: 667 LLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 709
L ++Q L W+V ++L+ GILAD+ GLGKTI TIALI
Sbjct: 553 LKQYQIKGLEWLVSLYNNNLN---GILADEMGLGKTIQTIALI 592
Score = 60 (26.2 bits), Expect = 7.1e-08, Sum P(3) = 7.1e-08
Identities = 17/57 (29%), Positives = 25/57 (43%)
Query: 781 LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDP-CELAKFDVVITTYSIV 836
L++ P S L WA E S +S + R P KF+V++TTY +
Sbjct: 606 LIIVPLSTLSNWAYEFDKWAPSVVKVSYKGSPAARRAFVPQLRSGKFNVLLTTYEYI 662
>MGI|MGI:2654144 [details] [associations]
symbol:Ercc6l "excision repair cross-complementing rodent
repair deficiency complementation group 6 like" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000775 "chromosome, centromeric region" evidence=IEA]
[GO:0000776 "kinetochore" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0005694 "chromosome" evidence=IEA] [GO:0007049
"cell cycle" evidence=IEA] [GO:0007067 "mitosis" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0051301 "cell division"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR011990 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50005
PROSITE:PS50293 PROSITE:PS51194 SMART:SM00490 MGI:MGI:2654144
GO:GO:0005524 GO:GO:0051301 GO:GO:0007067 GO:GO:0003677
Gene3D:1.25.40.10 GO:GO:0004386 HSSP:Q97XQ5 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0000777
CTD:54821 GeneTree:ENSGT00590000083118 HOGENOM:HOG000074172
HOVERGEN:HBG107854 OrthoDB:EOG4FR0RD EMBL:AY172688 EMBL:AK029015
EMBL:AK045113 EMBL:AK084617 EMBL:AK084618 EMBL:AL807784
EMBL:BC037660 IPI:IPI00221889 RefSeq:NP_666347.2 UniGene:Mm.31911
ProteinModelPortal:Q8BHK9 SMR:Q8BHK9 IntAct:Q8BHK9 STRING:Q8BHK9
PhosphoSite:Q8BHK9 PaxDb:Q8BHK9 PRIDE:Q8BHK9
Ensembl:ENSMUST00000056904 GeneID:236930 KEGG:mmu:236930
UCSC:uc009tyk.2 InParanoid:Q8BHK9 NextBio:383173 Bgee:Q8BHK9
Genevestigator:Q8BHK9 Uniprot:Q8BHK9
Length = 1240
Score = 116 (45.9 bits), Expect = 8.2e-08, Sum P(3) = 8.2e-08
Identities = 37/111 (33%), Positives = 52/111 (46%)
Query: 907 WFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFL-RYDPFA 965
W V+LDEA IK+ T+ A + A R L+GTP+QN + +L+S F F +
Sbjct: 223 WDYVILDEAHKIKSASTKSAVCARAIPASNRLLLTGTPVQNNLQELWSLFDFACQGSLLG 282
Query: 966 VYKSFCSMIKVPI----SKNPVKGYK--------KLQAVLKTIMLRRTKGE 1004
K+F + PI K+ G K L ++K LRRTK E
Sbjct: 283 TLKTFKMEYEHPIIRAREKDATPGEKALGLKISENLMEIIKPYFLRRTKEE 333
Score = 78 (32.5 bits), Expect = 8.2e-08, Sum P(3) = 8.2e-08
Identities = 20/45 (44%), Positives = 26/45 (57%)
Query: 667 LLRHQR--IALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 709
L HQ+ IA + + K+ GGILADD GLGKT+ IA +
Sbjct: 97 LFEHQKEGIAFLYSLYKDGRK----GGILADDMGLGKTVQIIAFL 137
Score = 71 (30.1 bits), Expect = 8.2e-08, Sum P(3) = 8.2e-08
Identities = 19/60 (31%), Positives = 32/60 (53%)
Query: 781 LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCELAKFD----VVITTYSIV 836
L++ PT+++ W E K T + V +HGSS+++ L + VVITTY ++
Sbjct: 150 LLIMPTNLINTWVNEFA-KWTP--GMRVKTFHGSSKSERTRSLTRIQQRNGVVITTYQML 206
>UNIPROTKB|F1N507 [details] [associations]
symbol:Bt.112326 "Uncharacterized protein" species:9913
"Bos taurus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR016024 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 OMA:TKQEGAI InterPro:IPR022707
Pfam:PF12054 GeneTree:ENSGT00630000089754 EMBL:DAAA02058811
EMBL:DAAA02058810 IPI:IPI00685441 Ensembl:ENSBTAT00000021438
Uniprot:F1N507
Length = 1845
Score = 111 (44.1 bits), Expect = 9.0e-08, Sum P(5) = 9.0e-08
Identities = 27/68 (39%), Positives = 38/68 (55%)
Query: 911 VLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAVYKSF 970
+LDE IKN +T++++A L A R LSGTPIQN + +L+S F FL + F
Sbjct: 1398 ILDEGHVIKNGKTKLSKAVKQLTANYRIILSGTPIQNNVLELWSLFDFLMPGFLGTERQF 1457
Query: 971 CSMIKVPI 978
+ PI
Sbjct: 1458 AARYGKPI 1465
Score = 89 (36.4 bits), Expect = 9.0e-08, Sum P(5) = 9.0e-08
Identities = 27/91 (29%), Positives = 43/91 (47%)
Query: 619 GYPGVPLTGLGGMKSKASDERLILQVAMQGISQPNAEASAPDGVLAVPLLRHQRIALSWM 678
G P P ++ KA ER L+ + G N + P + L ++Q+ ++W+
Sbjct: 1218 GIPDPPNMSEELIQLKAK-ERHFLEQLLDGKKLENYKIPVP---INAELRKYQQDGVNWL 1273
Query: 679 VQKETSSLHCSGGILADDQGLGKTISTIALI 709
LH GIL DD GLGKT+ +I ++
Sbjct: 1274 AFLNKYKLH---GILCDDMGLGKTLQSICIL 1301
Score = 74 (31.1 bits), Expect = 9.0e-08, Sum P(5) = 9.0e-08
Identities = 17/63 (26%), Positives = 36/63 (57%)
Query: 780 TLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHG--SSRTKDPCELAKFDVVITTYSIVS 837
+LVVCP ++ W +E+ K S+ L+ L Y G + R + ++ + ++V+ +Y +V
Sbjct: 1325 SLVVCPPTLTGHWVDEV-GKFCSREYLNPLHYTGPPTERIRLQHQVKRHNLVVASYDVVR 1383
Query: 838 MEV 840
++
Sbjct: 1384 NDI 1386
Score = 47 (21.6 bits), Expect = 9.0e-08, Sum P(5) = 9.0e-08
Identities = 11/51 (21%), Positives = 26/51 (50%)
Query: 464 EEHEDLILESKRARFCQEICDGSSSRSPIDGRHLSLNLNGSRQYFPYAQPS 514
++ E+ ++++ A++ ++ ++R+P + NL S PY PS
Sbjct: 881 KKEENTLVQNYAAQWMAKLLQQCTTRTPCPNSKIIKNLCSSLCVDPYLTPS 931
Score = 41 (19.5 bits), Expect = 1.2e-07, Sum P(4) = 1.2e-07
Identities = 15/67 (22%), Positives = 29/67 (43%)
Query: 422 EAVGRNSSYHDGCNSFPF-KDSGQSFIGLSPSLLSQNQVVHAKEEHEDLILESKR---AR 477
+AV N +D + P K S + ++ S + ++ + LI E+
Sbjct: 226 DAVETNEKSNDSTDGEPEEKRRKTSNVVINQSAVDSKVLIDNIPDSSPLIEETNEWPLES 285
Query: 478 FCQEICD 484
FC+E+C+
Sbjct: 286 FCEELCN 292
Score = 38 (18.4 bits), Expect = 9.0e-08, Sum P(5) = 9.0e-08
Identities = 7/17 (41%), Positives = 11/17 (64%)
Query: 278 YINTGDTIFGDPSSFNF 294
YI DT+ DP++ +F
Sbjct: 651 YIAGADTVMEDPTTRDF 667
>ZFIN|ZDB-GENE-021125-1 [details] [associations]
symbol:smarca5 "SWI/SNF related, matrix associated,
actin dependent regulator of chromatin, subfamily a, member 5"
species:7955 "Danio rerio" [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0016818 "hydrolase activity, acting on
acid anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0031491 "nucleosome binding"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0006338 "chromatin remodeling" evidence=IEA] [GO:0060041
"retina development in camera-type eye" evidence=IMP]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 ZFIN:ZDB-GENE-021125-1 GO:GO:0005524
GO:GO:0003677 Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0060041
InterPro:IPR017884 PROSITE:PS51293 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0016585 GO:GO:0031491
GO:GO:0043044 GeneTree:ENSGT00680000100002 HOGENOM:HOG000192862
SUPFAM:SSF101224 OMA:EDYCHWR HOVERGEN:HBG056329 EMBL:CU550733
IPI:IPI00619566 UniGene:Dr.76168 Ensembl:ENSDART00000123972
ArrayExpress:B8A552 Bgee:B8A552 Uniprot:B8A552
Length = 1035
Score = 133 (51.9 bits), Expect = 1.1e-07, Sum P(2) = 1.1e-07
Identities = 32/111 (28%), Positives = 54/111 (48%)
Query: 894 LLDIVAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLY 953
+L I K W +V+DEA IKN +++++ + R L+GTP+QN + +L+
Sbjct: 272 MLIIERAVFKKFNWRYLVIDEAHRIKNEKSKLSEIVREFKTTNRLLLTGTPLQNNLHELW 331
Query: 954 SYFRFLRYDPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGE 1004
+ FL D F + F + K ++L VL+ +LRR K +
Sbjct: 332 ALLNFLLPDVFNSSEDFDAWFDTNNCLGDTKLVERLHTVLRPFLLRRIKAD 382
Score = 81 (33.6 bits), Expect = 1.1e-07, Sum P(2) = 1.1e-07
Identities = 19/52 (36%), Positives = 31/52 (59%)
Query: 658 APDGVLAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 709
+P V L +Q L+W++ + ++ GILAD+ GLGKT+ TI+L+
Sbjct: 154 SPSYVKTGKLRDYQVRGLNWLISLYENGIN---GILADEMGLGKTLQTISLL 202
>DICTYBASE|DDB_G0267556 [details] [associations]
symbol:DDB_G0267556 "CHR group protein" species:44689
"Dictyostelium discoideum" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0267556
GO:GO:0005524 GO:GO:0003677 EMBL:AAFI02000003 GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
RefSeq:XP_647125.1 ProteinModelPortal:Q55GQ9
EnsemblProtists:DDB0233433 GeneID:8615929 KEGG:ddi:DDB_G0267556
InParanoid:Q55GQ9 OMA:CANVVIF ProtClustDB:CLSZ2501118
Uniprot:Q55GQ9
Length = 1159
Score = 103 (41.3 bits), Expect = 1.1e-07, Sum P(4) = 1.1e-07
Identities = 30/106 (28%), Positives = 53/106 (50%)
Query: 900 GPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFL 959
G L + + ++LDEAQ+IKN ++ + + + A R L+GTP+QN + +L+S FL
Sbjct: 662 GFLKRFDYSFLILDEAQNIKNSDSKRYKNIFKIGAHHRLLLTGTPLQNNLYELWSLLNFL 721
Query: 960 RYDPFAVYKSFCSMIKVPISKNPV---KGYKKLQAVLKTIMLRRTK 1002
F K ++ + N +++ +L +LRR K
Sbjct: 722 MPHIFGSVKKDNYLLNQLLEYNGDDCDSAITRMKKILSPFILRRLK 767
Score = 85 (35.0 bits), Expect = 1.1e-07, Sum P(4) = 1.1e-07
Identities = 20/45 (44%), Positives = 29/45 (64%)
Query: 670 HQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI--LKE 712
+Q I L+WM ++ GILAD+ GLGKT+ TI+L+ +KE
Sbjct: 545 YQLIGLNWMAVLYKEKIN---GILADEMGLGKTVQTISLLAHIKE 586
Score = 78 (32.5 bits), Expect = 1.1e-07, Sum P(4) = 1.1e-07
Identities = 22/64 (34%), Positives = 37/64 (57%)
Query: 781 LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPC--ELAK------FDVVITT 832
LVV P ++L W E + T SLS++ Y+G+ R ++ EL K F+V++TT
Sbjct: 595 LVVVPATILANWEREFQ---TWCPSLSIVRYYGNLREREELRYELKKKRPGKDFNVILTT 651
Query: 833 YSIV 836
Y+++
Sbjct: 652 YNLL 655
Score = 41 (19.5 bits), Expect = 1.1e-07, Sum P(4) = 1.1e-07
Identities = 14/62 (22%), Positives = 24/62 (38%)
Query: 384 YSHSHSSRTKQMVFAKDEGNDDLFPCWSTVSDSVEPIDEAVGRNSSYHDGCNSFPFKDSG 443
YS S R K++V + +T S + + ++S+ + S P K
Sbjct: 47 YSDSEKRRKKRVVNNNNNNTKKTTTVTNTKQSSTQSLKSNNKKSSTSSNNKKSSPIKKKK 106
Query: 444 QS 445
QS
Sbjct: 107 QS 108
>WB|WBGene00000803 [details] [associations]
symbol:csb-1 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0000287
"magnesium ion binding" evidence=IEA] [GO:0004427 "inorganic
diphosphatase activity" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0006796 "phosphate-containing compound metabolic
process" evidence=IEA] [GO:0009792 "embryo development ending in
birth or egg hatching" evidence=IMP] [GO:0009650 "UV protection"
evidence=IMP] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0009792 GO:GO:0003677 GO:GO:0004386 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0009650
GeneTree:ENSGT00590000083118 KO:K10841 EMBL:Z81089 PIR:T22595
RefSeq:NP_510607.2 ProteinModelPortal:Q93781 SMR:Q93781
EnsemblMetazoa:F53H4.1 GeneID:181674 KEGG:cel:CELE_F53H4.1
UCSC:F53H4.1 CTD:181674 WormBase:F53H4.1 HOGENOM:HOG000020742
InParanoid:Q93781 OMA:GDICNHP NextBio:914906 Uniprot:Q93781
Length = 957
Score = 108 (43.1 bits), Expect = 1.2e-07, Sum P(4) = 1.2e-07
Identities = 39/140 (27%), Positives = 68/140 (48%)
Query: 885 KQKKGPDGLLL-------DIVAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRR 937
++K+ PDG ++ + P+ K W V+LDE I+N T+ + A L +R
Sbjct: 303 RRKEYPDGAIILTTYSLFTKLKKPIVKHLWQVVILDEGHYIRNENTKCSIAMRKLMTTQR 362
Query: 938 WCLSGTPIQNAIDDLYSYFRFLR----YDPFAVYKSFCSMIKVPISKN--P---VKGYKK 988
+ L+GTP QN + + + F+ D +++F +I + N P K Y+
Sbjct: 363 FILTGTPFQNRLSEFWKLVDFVHPGRLSDSATFHRNFTHIINAGANLNCSPEAAAKAYEC 422
Query: 989 LQAV---LKTIMLRRTKGED 1005
L A+ +K ++LRR + ED
Sbjct: 423 LVALHIAVKPLILRRLQ-ED 441
Score = 92 (37.4 bits), Expect = 1.2e-07, Sum P(4) = 1.2e-07
Identities = 20/43 (46%), Positives = 29/43 (67%)
Query: 667 LLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 709
L + Q+ + W+ QK+T H SGGILAD+ GLGKTI ++ +
Sbjct: 194 LHKFQQEGVEWL-QKKTD--HRSGGILADEMGLGKTIQSVVFL 233
Score = 58 (25.5 bits), Expect = 1.2e-07, Sum P(4) = 1.2e-07
Identities = 15/40 (37%), Positives = 24/40 (60%)
Query: 781 LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSS-RTKD 819
L+VC S++ QW +EL N+ K + +L H S+ R +D
Sbjct: 253 LIVCHVSIIAQWIKEL-NQWFPKARVFLLHSHCSTGRQED 291
Score = 45 (20.9 bits), Expect = 1.2e-07, Sum P(4) = 1.2e-07
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 543 KLSPESIQSNSSDCKSHVDDEPDICILEDISQP 575
K PE+ S + S VDD+ DI ++ED + P
Sbjct: 4 KPEPENPDSGTPKTLS-VDDD-DIVVIEDQNTP 34
>UNIPROTKB|E1C0M8 [details] [associations]
symbol:SMARCA5 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0004386 "helicase activity" evidence=IEA]
[GO:0031491 "nucleosome binding" evidence=IEA] [GO:0000183
"chromatin silencing at rDNA" evidence=IEA] [GO:0000793 "condensed
chromosome" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005677 "chromatin
silencing complex" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0006302 "double-strand break repair"
evidence=IEA] [GO:0006334 "nucleosome assembly" evidence=IEA]
[GO:0006352 "DNA-dependent transcription, initiation" evidence=IEA]
[GO:0009790 "embryo development" evidence=IEA] [GO:0016584
"nucleosome positioning" evidence=IEA] [GO:0016589 "NURF complex"
evidence=IEA] [GO:0016887 "ATPase activity" evidence=IEA]
[GO:0031213 "RSF complex" evidence=IEA] [GO:0042393 "histone
binding" evidence=IEA] [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=IEA] [GO:0043596 "nuclear replication fork"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR009057 InterPro:IPR015194
InterPro:IPR015195 InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 GO:GO:0005524 GO:GO:0005730
GO:GO:0003677 GO:GO:0006352 GO:GO:0016887 Gene3D:1.10.10.60
SUPFAM:SSF46689 GO:GO:0043596 InterPro:IPR017884 PROSITE:PS51293
GO:GO:0000183 GO:GO:0006302 GO:GO:0004386 GO:GO:0000793
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0031491
GO:GO:0043044 GO:GO:0016584 GO:GO:0006334 GO:GO:0005677
GO:GO:0016589 GeneTree:ENSGT00680000100002 SUPFAM:SSF101224
OMA:EDYCHWR GO:GO:0031213 EMBL:AADN02016239 EMBL:AADN02016240
IPI:IPI00577188 Ensembl:ENSGALT00000016121 ArrayExpress:E1C0M8
Uniprot:E1C0M8
Length = 1038
Score = 132 (51.5 bits), Expect = 1.3e-07, Sum P(3) = 1.3e-07
Identities = 31/101 (30%), Positives = 51/101 (50%)
Query: 904 KVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDP 963
K W +V+DEA IKN +++++ + R L+GTP+QN + +L++ FL D
Sbjct: 284 KFNWRYLVIDEAHRIKNEKSKLSEIVREFKTTNRLLLTGTPLQNNLHELWALLNFLLPDV 343
Query: 964 FAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGE 1004
F + F S K ++L VL+ +LRR K +
Sbjct: 344 FNSSEDFDSWFDTNNCLGDQKLVERLHMVLRPFLLRRIKAD 384
Score = 79 (32.9 bits), Expect = 1.3e-07, Sum P(3) = 1.3e-07
Identities = 17/43 (39%), Positives = 29/43 (67%)
Query: 668 LRHQRI-ALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 709
LR ++ L+W++ + ++ GILAD+ GLGKT+ TI+L+
Sbjct: 165 LRDYQVRGLNWLISLYENGIN---GILADEMGLGKTLQTISLL 204
Score = 49 (22.3 bits), Expect = 1.3e-07, Sum P(3) = 1.3e-07
Identities = 13/61 (21%), Positives = 30/61 (49%)
Query: 781 LVVCPTSVLRQWAEELRNKVTSKGSLSVL--VYHGSSRTKDPCELAKFDVVITTYSIVSM 838
+V+ P S L W E + V + ++ ++ ++ +D ++DV +T+Y ++
Sbjct: 218 MVLVPKSTLHNWMNEFKRWVPTLRAVCLIGDKDQRAAFVRDVLLPGEWDVCVTSYEMLIK 277
Query: 839 E 839
E
Sbjct: 278 E 278
>RGD|1565734 [details] [associations]
symbol:Ercc6l "excision repair cross-complementing rodent repair
deficiency complementation group 6 - like" species:10116 "Rattus
norvegicus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR011990 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 RGD:1565734 GO:GO:0005524 GO:GO:0003677
Gene3D:1.25.40.10 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 CTD:54821 GeneTree:ENSGT00590000083118 OMA:TKNGDLE
OrthoDB:EOG4FR0RD EMBL:CH473966 IPI:IPI00362012
RefSeq:NP_001092144.1 UniGene:Rn.72855 Ensembl:ENSRNOT00000004310
GeneID:317252 KEGG:rno:317252 UCSC:RGD:1565734 NextBio:671491
Uniprot:D4A0G9
Length = 1230
Score = 116 (45.9 bits), Expect = 1.3e-07, Sum P(3) = 1.3e-07
Identities = 38/111 (34%), Positives = 53/111 (47%)
Query: 907 WFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFL-RYDPFA 965
W V+LDEA IK+ T+ A + A R L+GTPIQN + +L+S F F +
Sbjct: 222 WDYVILDEAHKIKSASTKSAVCARAVPASNRLLLTGTPIQNNLQELWSLFDFACQGSLLG 281
Query: 966 VYKSFCSMIKVPISKNPVK---------GYK---KLQAVLKTIMLRRTKGE 1004
K+F + PI + K G+K L ++K LRRTK E
Sbjct: 282 TLKTFKMEYENPIIRAREKDATPGEKALGFKMSENLMEIIKPYFLRRTKEE 332
Score = 78 (32.5 bits), Expect = 1.3e-07, Sum P(3) = 1.3e-07
Identities = 17/43 (39%), Positives = 25/43 (58%)
Query: 667 LLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 709
L HQ+ ++++ + GGILADD GLGKT+ IA +
Sbjct: 96 LFEHQKEGIAFLYSLYKNGR--KGGILADDMGLGKTVQIIAFL 136
Score = 69 (29.3 bits), Expect = 1.3e-07, Sum P(3) = 1.3e-07
Identities = 19/60 (31%), Positives = 32/60 (53%)
Query: 781 LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCELAKFD----VVITTYSIV 836
L++ PT+++ W +E K T + V +HGSS+ + L + VVITTY ++
Sbjct: 149 LLIMPTNLINTWVKEFA-KWTP--GMRVKTFHGSSKNERIRNLTRIQQRNGVVITTYQML 205
>CGD|CAL0001763 [details] [associations]
symbol:orf19.1871 species:5476 "Candida albicans" [GO:0000812
"Swr1 complex" evidence=IEA] [GO:0005198 "structural molecule
activity" evidence=IEA] [GO:0043486 "histone exchange"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490
CGD:CAL0001763 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0003677 GO:GO:0006351 GO:GO:0016568 GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529 PROSITE:PS51204
EMBL:AACQ01000133 EMBL:AACQ01000132 RefSeq:XP_713128.1
RefSeq:XP_713174.1 ProteinModelPortal:Q59U81 STRING:Q59U81
PRIDE:Q59U81 GeneID:3645174 GeneID:3645220 KEGG:cal:CaO19.1871
KEGG:cal:CaO19.9427 KO:K11681 Uniprot:Q59U81
Length = 1641
Score = 105 (42.0 bits), Expect = 1.4e-07, Sum P(3) = 1.4e-07
Identities = 22/53 (41%), Positives = 32/53 (60%)
Query: 907 WFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFL 959
W ++LDEA +IKN R+ RA + R L+GTP+QN + +L+S FL
Sbjct: 945 WTYMILDEAHNIKNFRSTRWRALLNFNTENRLLLTGTPLQNNLMELWSLLYFL 997
Score = 97 (39.2 bits), Expect = 1.4e-07, Sum P(3) = 1.4e-07
Identities = 51/190 (26%), Positives = 86/190 (45%)
Query: 526 EDMEAEIKTRSMASHLLKLSPESIQSNSSDCKSHVDDEPDICILEDISQPARSNQSLVLG 585
ED+ E +R M S L S SI + S +S D E D +S+P RS+++ G
Sbjct: 686 EDLNQESDSR-MNSLLDSDSVSSISDSESSEESSSDTEMD---QSTVSEPPRSSET---G 738
Query: 586 KTLSMNRSACSNHSVALGKP---VVTSQHSSYSDYPGYPG---VPLTGLGGMKSKASDER 639
+ S +N ++ + ++S + SD + + G G + AS +
Sbjct: 739 SNTGL-ASLFTNGTIVSDEEDDVSISSNFENESDESMNSSDRELEVNGNGKIDKIASTDE 797
Query: 640 LILQVAMQGISQPNAEASAPDGVLAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGL 699
V + S+ + P +L L +Q+ L+W+ ++ + GILAD+ GL
Sbjct: 798 DDSNVEIVNGSKVK-DVPIPS-LLRGTLRPYQKQGLNWLASLYNNN---TNGILADEMGL 852
Query: 700 GKTISTIALI 709
GKTI TI+L+
Sbjct: 853 GKTIQTISLL 862
Score = 65 (27.9 bits), Expect = 1.4e-07, Sum P(3) = 1.4e-07
Identities = 21/61 (34%), Positives = 31/61 (50%)
Query: 781 LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGS-----SRTKDPCELAKFDVVITTYSI 835
L++ PTSV+ W E+ K + G VL Y+GS + K + F V IT+Y +
Sbjct: 876 LIIVPTSVMLNW--EMEFKKFAPG-FKVLTYYGSPQQRAQKRKGWNKPDAFHVCITSYQL 932
Query: 836 V 836
V
Sbjct: 933 V 933
>RGD|1311921 [details] [associations]
symbol:Chd7 "chromodomain helicase DNA binding protein 7"
species:10116 "Rattus norvegicus" [GO:0001501 "skeletal system
development" evidence=IEA;ISO] [GO:0001568 "blood vessel
development" evidence=ISO] [GO:0001701 "in utero embryonic
development" evidence=IEA;ISO] [GO:0003007 "heart morphogenesis"
evidence=IEA;ISO] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0007417 "central
nervous system development" evidence=IEA;ISO] [GO:0007512 "adult
heart development" evidence=IEA;ISO] [GO:0007605 "sensory
perception of sound" evidence=IEA;ISO] [GO:0007626 "locomotory
behavior" evidence=ISO] [GO:0007628 "adult walking behavior"
evidence=IEA;ISO] [GO:0008015 "blood circulation" evidence=IEA;ISO]
[GO:0021545 "cranial nerve development" evidence=IEA;ISO]
[GO:0030217 "T cell differentiation" evidence=IEA;ISO] [GO:0030540
"female genitalia development" evidence=IEA;ISO] [GO:0035116
"embryonic hindlimb morphogenesis" evidence=IEA;ISO] [GO:0040018
"positive regulation of multicellular organism growth"
evidence=IEA;ISO] [GO:0042471 "ear morphogenesis" evidence=ISO]
[GO:0042472 "inner ear morphogenesis" evidence=ISO] [GO:0043010
"camera-type eye development" evidence=ISO] [GO:0043584 "nose
development" evidence=IEA;ISO] [GO:0048752 "semicircular canal
morphogenesis" evidence=IEA;ISO] [GO:0048806 "genitalia
development" evidence=ISO] [GO:0048844 "artery morphogenesis"
evidence=IEA;ISO] [GO:0050890 "cognition" evidence=IEA;ISO]
[GO:0060021 "palate development" evidence=IEA;ISO] [GO:0060041
"retina development in camera-type eye" evidence=IEA;ISO]
[GO:0060123 "regulation of growth hormone secretion"
evidence=IEA;ISO] [GO:0060173 "limb development" evidence=ISO]
[GO:0060324 "face development" evidence=IEA;ISO] InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271 Pfam:PF07533
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
SMART:SM00592 SMART:SM00717 Pfam:PF00385 RGD:1311921 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0008015 GO:GO:0003007
GO:GO:0050890 GO:GO:0001701 GO:GO:0040018 GO:GO:0007417
GO:GO:0003682 GO:GO:0001501 GO:GO:0060041 GO:GO:0007605
GO:GO:0007512 GO:GO:0004386 GO:GO:0035116 GO:GO:0060324
GO:GO:0060021 GO:GO:0048844 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0030540
GO:GO:0007628 GO:GO:0030217 GO:GO:0048752 InterPro:IPR023780
CTD:55636 KO:K14437 OrthoDB:EOG4MCWZD GO:GO:0021545 GO:GO:0043584
GO:GO:0060123 GeneTree:ENSGT00560000077077 IPI:IPI00366595
RefSeq:XP_003749947.1 PRIDE:D3ZAP7 Ensembl:ENSRNOT00000008901
GeneID:312974 KEGG:rno:312974 UCSC:RGD:1311921 Uniprot:D3ZAP7
Length = 2985
Score = 136 (52.9 bits), Expect = 1.4e-07, Sum P(3) = 1.4e-07
Identities = 35/104 (33%), Positives = 55/104 (52%)
Query: 902 LAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRY 961
L + W VV+DEA +KN ++ + + + L+GTP+QN +++L+S FL
Sbjct: 1083 LRNIPWRCVVIDEAHRLKNRNCKLLEGLKMMDLEHKVLLTGTPLQNTVEELFSLLHFLEP 1142
Query: 962 DPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGED 1005
F +F ++ V+ KLQA+LK +MLRR K ED
Sbjct: 1143 SRFPSETTFMQEFGDLKTEEQVQ---KLQAILKPMMLRRLK-ED 1182
Score = 74 (31.1 bits), Expect = 1.4e-07, Sum P(3) = 1.4e-07
Identities = 29/100 (29%), Positives = 44/100 (44%)
Query: 760 GSSAKSFNFVEQAKGRPAAGT-LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSS--- 815
G + +S F+ + + G LV+ P S + W E R L+V+VYHGS
Sbjct: 987 GKTIQSITFLYEIYLKGIHGPFLVIAPLSTIPNWEREFRTWT----ELNVVVYHGSQASR 1042
Query: 816 RT--------KDPCELA-----KFDVVITTYSIVSMEVPK 842
RT KDP KF +ITT+ ++ + P+
Sbjct: 1043 RTIQLYEMYFKDPQGRVIKGSYKFHAIITTFEMILTDCPE 1082
Score = 64 (27.6 bits), Expect = 1.4e-07, Sum P(3) = 1.4e-07
Identities = 15/43 (34%), Positives = 25/43 (58%)
Query: 667 LLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 709
L +Q ++W++ + +C ILAD+ GLGKTI +I +
Sbjct: 957 LREYQLEGVNWLLFNWYNMRNC---ILADEMGLGKTIQSITFL 996
>MGI|MGI:2444748 [details] [associations]
symbol:Chd7 "chromodomain helicase DNA binding protein 7"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0001501 "skeletal system development"
evidence=ISO] [GO:0001568 "blood vessel development" evidence=IMP]
[GO:0001701 "in utero embryonic development" evidence=ISO;IMP]
[GO:0003007 "heart morphogenesis" evidence=ISO;IMP] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0007417 "central
nervous system development" evidence=ISO] [GO:0007512 "adult heart
development" evidence=IMP] [GO:0007605 "sensory perception of
sound" evidence=IMP] [GO:0007626 "locomotory behavior"
evidence=IMP] [GO:0007628 "adult walking behavior" evidence=IMP]
[GO:0008015 "blood circulation" evidence=IMP] [GO:0016568
"chromatin modification" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0016817 "hydrolase activity, acting on
acid anhydrides" evidence=IEA] [GO:0021545 "cranial nerve
development" evidence=ISO] [GO:0030217 "T cell differentiation"
evidence=ISO] [GO:0030540 "female genitalia development"
evidence=IMP] [GO:0035116 "embryonic hindlimb morphogenesis"
evidence=IMP] [GO:0040018 "positive regulation of multicellular
organism growth" evidence=IMP] [GO:0042471 "ear morphogenesis"
evidence=IMP] [GO:0042472 "inner ear morphogenesis"
evidence=ISO;IMP] [GO:0043010 "camera-type eye development"
evidence=IMP] [GO:0043584 "nose development" evidence=ISO;IMP]
[GO:0048752 "semicircular canal morphogenesis" evidence=IGI]
[GO:0048806 "genitalia development" evidence=ISO] [GO:0048844
"artery morphogenesis" evidence=IGI] [GO:0050890 "cognition"
evidence=ISO] [GO:0060021 "palate development" evidence=ISO;IMP]
[GO:0060041 "retina development in camera-type eye" evidence=ISO]
[GO:0060123 "regulation of growth hormone secretion" evidence=ISO]
[GO:0060173 "limb development" evidence=ISO] [GO:0060324 "face
development" evidence=ISO] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR006576
Pfam:PF00176 Pfam:PF00271 Pfam:PF07533 PROSITE:PS00690
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
SMART:SM00592 SMART:SM00717 MGI:MGI:2444748 Pfam:PF00385
GO:GO:0005524 GO:GO:0005634 GO:GO:0006355 GO:GO:0003677
GO:GO:0008015 GO:GO:0003007 GO:GO:0050890 GO:GO:0001701
GO:GO:0040018 GO:GO:0007417 GO:GO:0006351 GO:GO:0003682
GO:GO:0016568 GO:GO:0043010 GO:GO:0001501 GO:GO:0060041
GO:GO:0007605 GO:GO:0007512 GO:GO:0004386 GO:GO:0035116
GO:GO:0060324 GO:GO:0060021 GO:GO:0048844 InterPro:IPR016197
SUPFAM:SSF54160 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0030540 GO:GO:0007628 GO:GO:0030217
GO:GO:0048752 InterPro:IPR023780 PROSITE:PS00598 HOVERGEN:HBG081150
CTD:55636 HOGENOM:HOG000246942 KO:K14437 OrthoDB:EOG4MCWZD
OMA:TFGVIFD GO:GO:0021545 GO:GO:0043584 GO:GO:0060123 EMBL:AK042727
EMBL:AK171051 EMBL:AK171857 EMBL:AK172025 EMBL:AL732627
EMBL:AL805903 EMBL:BC034239 IPI:IPI00345676 IPI:IPI00666779
IPI:IPI00849588 RefSeq:NP_001074886.1 UniGene:Mm.138792
ProteinModelPortal:A2AJK6 SMR:A2AJK6 IntAct:A2AJK6 STRING:A2AJK6
PhosphoSite:A2AJK6 PaxDb:A2AJK6 PRIDE:A2AJK6
Ensembl:ENSMUST00000039267 Ensembl:ENSMUST00000051558
Ensembl:ENSMUST00000127476 GeneID:320790 KEGG:mmu:320790
UCSC:uc008rxy.1 UCSC:uc008rya.1 GeneTree:ENSGT00560000077077
InParanoid:A2AJK6 NextBio:397435 Bgee:A2AJK6 CleanEx:MM_CHD7
Genevestigator:A2AJK6 Uniprot:A2AJK6
Length = 2986
Score = 136 (52.9 bits), Expect = 1.4e-07, Sum P(3) = 1.4e-07
Identities = 35/104 (33%), Positives = 55/104 (52%)
Query: 902 LAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRY 961
L + W VV+DEA +KN ++ + + + L+GTP+QN +++L+S FL
Sbjct: 1084 LRNIPWRCVVIDEAHRLKNRNCKLLEGLKMMDLEHKVLLTGTPLQNTVEELFSLLHFLEP 1143
Query: 962 DPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGED 1005
F +F ++ V+ KLQA+LK +MLRR K ED
Sbjct: 1144 SRFPSETTFMQEFGDLKTEEQVQ---KLQAILKPMMLRRLK-ED 1183
Score = 74 (31.1 bits), Expect = 1.4e-07, Sum P(3) = 1.4e-07
Identities = 29/100 (29%), Positives = 44/100 (44%)
Query: 760 GSSAKSFNFVEQAKGRPAAGT-LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSS--- 815
G + +S F+ + + G LV+ P S + W E R L+V+VYHGS
Sbjct: 988 GKTIQSITFLYEIYLKGIHGPFLVIAPLSTIPNWEREFRTWT----ELNVVVYHGSQASR 1043
Query: 816 RT--------KDPCELA-----KFDVVITTYSIVSMEVPK 842
RT KDP KF +ITT+ ++ + P+
Sbjct: 1044 RTIQLYEMYFKDPQGRVIKGSYKFHAIITTFEMILTDCPE 1083
Score = 64 (27.6 bits), Expect = 1.4e-07, Sum P(3) = 1.4e-07
Identities = 15/43 (34%), Positives = 25/43 (58%)
Query: 667 LLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 709
L +Q ++W++ + +C ILAD+ GLGKTI +I +
Sbjct: 958 LREYQLEGVNWLLFNWYNMRNC---ILADEMGLGKTIQSITFL 997
>UNIPROTKB|F1RT88 [details] [associations]
symbol:CHD7 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0060324 "face development" evidence=IEA] [GO:0060123
"regulation of growth hormone secretion" evidence=IEA] [GO:0060041
"retina development in camera-type eye" evidence=IEA] [GO:0060021
"palate development" evidence=IEA] [GO:0050890 "cognition"
evidence=IEA] [GO:0048844 "artery morphogenesis" evidence=IEA]
[GO:0048752 "semicircular canal morphogenesis" evidence=IEA]
[GO:0043584 "nose development" evidence=IEA] [GO:0040018 "positive
regulation of multicellular organism growth" evidence=IEA]
[GO:0035116 "embryonic hindlimb morphogenesis" evidence=IEA]
[GO:0030540 "female genitalia development" evidence=IEA]
[GO:0030217 "T cell differentiation" evidence=IEA] [GO:0021545
"cranial nerve development" evidence=IEA] [GO:0008015 "blood
circulation" evidence=IEA] [GO:0007628 "adult walking behavior"
evidence=IEA] [GO:0007605 "sensory perception of sound"
evidence=IEA] [GO:0007512 "adult heart development" evidence=IEA]
[GO:0007417 "central nervous system development" evidence=IEA]
[GO:0003007 "heart morphogenesis" evidence=IEA] [GO:0001701 "in
utero embryonic development" evidence=IEA] [GO:0001501 "skeletal
system development" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271
Pfam:PF07533 PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298
SMART:SM00490 SMART:SM00592 SMART:SM00717 Pfam:PF00385
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0008015
GO:GO:0003007 GO:GO:0050890 GO:GO:0001701 GO:GO:0040018
GO:GO:0007417 GO:GO:0003682 GO:GO:0001501 GO:GO:0060041
GO:GO:0007605 GO:GO:0007512 GO:GO:0004386 GO:GO:0035116
GO:GO:0060324 GO:GO:0060021 GO:GO:0048844 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0030540 GO:GO:0007628 GO:GO:0030217 GO:GO:0048752
InterPro:IPR023780 OMA:TFGVIFD GO:GO:0021545 GO:GO:0043584
GO:GO:0060123 GeneTree:ENSGT00560000077077 EMBL:CU179734
Ensembl:ENSSSCT00000006828 Uniprot:F1RT88
Length = 2991
Score = 136 (52.9 bits), Expect = 1.4e-07, Sum P(3) = 1.4e-07
Identities = 35/104 (33%), Positives = 55/104 (52%)
Query: 902 LAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRY 961
L + W VV+DEA +KN ++ + + + L+GTP+QN +++L+S FL
Sbjct: 1087 LRNIPWRCVVIDEAHRLKNRNCKLLEGLKMMDLEHKVLLTGTPLQNTVEELFSLLHFLEP 1146
Query: 962 DPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGED 1005
F +F ++ V+ KLQA+LK +MLRR K ED
Sbjct: 1147 SRFPSETTFMQEFGDLKTEEQVQ---KLQAILKPMMLRRLK-ED 1186
Score = 74 (31.1 bits), Expect = 1.4e-07, Sum P(3) = 1.4e-07
Identities = 29/100 (29%), Positives = 44/100 (44%)
Query: 760 GSSAKSFNFVEQAKGRPAAGT-LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSS--- 815
G + +S F+ + + G LV+ P S + W E R L+V+VYHGS
Sbjct: 991 GKTIQSITFLYEIYLKGIHGPFLVIAPLSTIPNWEREFRTWT----ELNVVVYHGSQASR 1046
Query: 816 RT--------KDPCELA-----KFDVVITTYSIVSMEVPK 842
RT KDP KF +ITT+ ++ + P+
Sbjct: 1047 RTIQLYEMYFKDPQGRVIKGSYKFHAIITTFEMILTDCPE 1086
Score = 64 (27.6 bits), Expect = 1.4e-07, Sum P(3) = 1.4e-07
Identities = 15/43 (34%), Positives = 25/43 (58%)
Query: 667 LLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 709
L +Q ++W++ + +C ILAD+ GLGKTI +I +
Sbjct: 961 LREYQLEGVNWLLFNWYNMRNC---ILADEMGLGKTIQSITFL 1000
>UNIPROTKB|F1PWD8 [details] [associations]
symbol:CHD7 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271 Pfam:PF07533
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
SMART:SM00592 SMART:SM00717 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0003682 GO:GO:0004386
InterPro:IPR016197 SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR023780 OMA:TFGVIFD EMBL:AAEX03015818
EMBL:AAEX03015819 EMBL:AAEX03015820 Ensembl:ENSCAFT00000011497
GeneTree:ENSGT00700000105087 Uniprot:F1PWD8
Length = 2994
Score = 136 (52.9 bits), Expect = 1.4e-07, Sum P(3) = 1.4e-07
Identities = 35/104 (33%), Positives = 55/104 (52%)
Query: 902 LAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRY 961
L + W VV+DEA +KN ++ + + + L+GTP+QN +++L+S FL
Sbjct: 1093 LRNIPWRCVVIDEAHRLKNRNCKLLEGLKMMDLEHKVLLTGTPLQNTVEELFSLLHFLEP 1152
Query: 962 DPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGED 1005
F +F ++ V+ KLQA+LK +MLRR K ED
Sbjct: 1153 SRFPSETTFMQEFGDLKTEEQVQ---KLQAILKPMMLRRLK-ED 1192
Score = 74 (31.1 bits), Expect = 1.4e-07, Sum P(3) = 1.4e-07
Identities = 29/100 (29%), Positives = 44/100 (44%)
Query: 760 GSSAKSFNFVEQAKGRPAAGT-LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSS--- 815
G + +S F+ + + G LV+ P S + W E R L+V+VYHGS
Sbjct: 997 GKTIQSITFLYEIYLKGIHGPFLVIAPLSTIPNWEREFRTWT----ELNVVVYHGSQASR 1052
Query: 816 RT--------KDPCELA-----KFDVVITTYSIVSMEVPK 842
RT KDP KF +ITT+ ++ + P+
Sbjct: 1053 RTIQSYEMYFKDPQGRVIKGSYKFHAIITTFEMILTDCPE 1092
Score = 64 (27.6 bits), Expect = 1.4e-07, Sum P(3) = 1.4e-07
Identities = 15/43 (34%), Positives = 25/43 (58%)
Query: 667 LLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 709
L +Q ++W++ + +C ILAD+ GLGKTI +I +
Sbjct: 967 LREYQLEGVNWLLFNWYNMRNC---ILADEMGLGKTIQSITFL 1006
>UNIPROTKB|O14981 [details] [associations]
symbol:BTAF1 "TATA-binding protein-associated factor 172"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=NAS] [GO:0005634 "nucleus"
evidence=NAS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=NAS] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR016024 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0045892 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
PROSITE:PS50077 GO:GO:0003677 GO:GO:0003700 GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
EMBL:AJ001017 EMBL:AF038362 EMBL:AF166118 IPI:IPI00024802
RefSeq:NP_003963.1 UniGene:Hs.500526 ProteinModelPortal:O14981
SMR:O14981 IntAct:O14981 MINT:MINT-2795412 STRING:O14981
PhosphoSite:O14981 PaxDb:O14981 PeptideAtlas:O14981 PRIDE:O14981
Ensembl:ENST00000265990 GeneID:9044 KEGG:hsa:9044 UCSC:uc001khr.3
CTD:9044 GeneCards:GC10P093673 HGNC:HGNC:17307 HPA:HPA042274
MIM:605191 neXtProt:NX_O14981 PharmGKB:PA25437 HOGENOM:HOG000210415
HOVERGEN:HBG017883 InParanoid:O14981 KO:K15192 OMA:TKQEGAI
OrthoDB:EOG4W0XC6 PhylomeDB:O14981 GenomeRNAi:9044 NextBio:33875
ArrayExpress:O14981 Bgee:O14981 CleanEx:HS_BTAF1
Genevestigator:O14981 GermOnline:ENSG00000095564 InterPro:IPR022707
Pfam:PF12054 Uniprot:O14981
Length = 1849
Score = 111 (44.1 bits), Expect = 1.5e-07, Sum P(4) = 1.5e-07
Identities = 27/68 (39%), Positives = 38/68 (55%)
Query: 911 VLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAVYKSF 970
+LDE IKN +T++++A L A R LSGTPIQN + +L+S F FL + F
Sbjct: 1402 ILDEGHVIKNGKTKLSKAVKQLTANYRIILSGTPIQNNVLELWSLFDFLMPGFLGTERQF 1461
Query: 971 CSMIKVPI 978
+ PI
Sbjct: 1462 AARYGKPI 1469
Score = 91 (37.1 bits), Expect = 1.5e-07, Sum P(4) = 1.5e-07
Identities = 27/91 (29%), Positives = 43/91 (47%)
Query: 619 GYPGVPLTGLGGMKSKASDERLILQVAMQGISQPNAEASAPDGVLAVPLLRHQRIALSWM 678
G P P ++ KA ER L+ + G N + P + L ++Q+ ++W+
Sbjct: 1222 GIPDPPNMSAELIQLKAK-ERHFLEQLLDGKKLENYKIPVP---INAELRKYQQDGVNWL 1277
Query: 679 VQKETSSLHCSGGILADDQGLGKTISTIALI 709
LH GIL DD GLGKT+ +I ++
Sbjct: 1278 AFLNKYKLH---GILCDDMGLGKTLQSICIL 1305
Score = 73 (30.8 bits), Expect = 1.5e-07, Sum P(4) = 1.5e-07
Identities = 16/63 (25%), Positives = 36/63 (57%)
Query: 780 TLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHG--SSRTKDPCELAKFDVVITTYSIVS 837
+LVVCP ++ W +E+ K S+ L+ L Y G + R + ++ + ++++ +Y +V
Sbjct: 1329 SLVVCPPTLTGHWVDEV-GKFCSREYLNPLHYTGPPTERIRLQHQVKRHNLIVASYDVVR 1387
Query: 838 MEV 840
++
Sbjct: 1388 NDI 1390
Score = 40 (19.1 bits), Expect = 2.7e-07, Sum P(5) = 2.7e-07
Identities = 10/50 (20%), Positives = 24/50 (48%)
Query: 464 EEHEDLILESKRARFCQEICDGSSSRSPIDGRHLSLNLNGSRQYFPYAQP 513
++ E+ ++++ A+ ++ ++R+P + NL S PY P
Sbjct: 886 KKEENTLVQNYAAQCIAKLLQQCTTRTPCPNSKIIKNLCSSLCVDPYLTP 935
Score = 39 (18.8 bits), Expect = 1.5e-07, Sum P(4) = 1.5e-07
Identities = 18/64 (28%), Positives = 32/64 (50%)
Query: 517 NKKELDGVKEDMEAEIKTRSMASHLLKLSPESIQSNSSDCKSHVDDEPDIC-ILEDISQ- 574
N+K D D E E K R +A+ + I +++D K +D+ PD ++E+ ++
Sbjct: 231 NEKSNDST--DGEPEEKRRKIANVV-------INQSANDSKVLIDNIPDSSSLIEETNEW 281
Query: 575 PARS 578
P S
Sbjct: 282 PLES 285
Score = 39 (18.8 bits), Expect = 2.7e-07, Sum P(5) = 2.7e-07
Identities = 8/17 (47%), Positives = 11/17 (64%)
Query: 278 YINTGDTIFGDPSSFNF 294
YI DTI DP++ +F
Sbjct: 656 YIAGADTIMEDPATRDF 672
Score = 37 (18.1 bits), Expect = 2.3e-07, Sum P(4) = 2.3e-07
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 464 EEHEDLILESKRARFCQEICD 484
EE + LES FC+E+C+
Sbjct: 276 EETNEWPLES----FCEELCN 292
>UNIPROTKB|F1MJ46 [details] [associations]
symbol:SMARCA4 "Transcription activator BRG1" species:9913
"Bos taurus" [GO:0071565 "nBAF complex" evidence=IEA] [GO:0071564
"npBAF complex" evidence=IEA] [GO:0060347 "heart trabecula
formation" evidence=IEA] [GO:0060318 "definitive erythrocyte
differentiation" evidence=IEA] [GO:0048730 "epidermis
morphogenesis" evidence=IEA] [GO:0048562 "embryonic organ
morphogenesis" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0043966 "histone H3 acetylation" evidence=IEA] [GO:0043388
"positive regulation of DNA binding" evidence=IEA] [GO:0035887
"aortic smooth muscle cell differentiation" evidence=IEA]
[GO:0035116 "embryonic hindlimb morphogenesis" evidence=IEA]
[GO:0030902 "hindbrain development" evidence=IEA] [GO:0030900
"forebrain development" evidence=IEA] [GO:0030216 "keratinocyte
differentiation" evidence=IEA] [GO:0030198 "extracellular matrix
organization" evidence=IEA] [GO:0019827 "stem cell maintenance"
evidence=IEA] [GO:0010424 "DNA methylation on cytosine within a CG
sequence" evidence=IEA] [GO:0008134 "transcription factor binding"
evidence=IEA] [GO:0007403 "glial cell fate determination"
evidence=IEA] [GO:0006346 "methylation-dependent chromatin
silencing" evidence=IEA] [GO:0006338 "chromatin remodeling"
evidence=IEA] [GO:0005726 "perichromatin fibrils" evidence=IEA]
[GO:0005719 "nuclear euchromatin" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0001889 "liver development"
evidence=IEA] [GO:0001835 "blastocyst hatching" evidence=IEA]
[GO:0001832 "blastocyst growth" evidence=IEA] [GO:0001570
"vasculogenesis" evidence=IEA] [GO:0000977 "RNA polymerase II
regulatory region sequence-specific DNA binding" evidence=IEA]
[GO:0000902 "cell morphogenesis" evidence=IEA] [GO:0000792
"heterochromatin" evidence=IEA] [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 InterPro:IPR006576 InterPro:IPR014978
Pfam:PF00176 Pfam:PF00271 Pfam:PF00439 Pfam:PF07533 Pfam:PF08880
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 SMART:SM00592 SMART:SM00951 GO:GO:0005524
GO:GO:0030216 GO:GO:0045944 GO:GO:0030198 GO:GO:0030900
GO:GO:0001889 GO:GO:0003682 GO:GO:0006338 GO:GO:0000122
GO:GO:0071564 GO:GO:0071565 GO:GO:0000902 GO:GO:0004386
GO:GO:0001570 GO:GO:0035116 GO:GO:0005719 GO:GO:0030902
GO:GO:0048730 GO:GO:0000977 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0019827 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 GO:GO:0000792 GO:GO:0060347
GO:GO:0043966 GO:GO:0043388 GeneTree:ENSGT00550000074659
InterPro:IPR013999 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 SMART:SM00573 PROSITE:PS51204 GO:GO:0001835
GO:GO:0007403 GO:GO:0006346 GO:GO:0010424 GO:GO:0060318
GO:GO:0048562 GO:GO:0001832 GO:GO:0005726 GO:GO:0035887
IPI:IPI00693529 OMA:HKPMESM EMBL:DAAA02019479 EMBL:DAAA02019480
EMBL:DAAA02019481 Ensembl:ENSBTAT00000025598 ArrayExpress:F1MJ46
Uniprot:F1MJ46
Length = 1604
Score = 114 (45.2 bits), Expect = 1.5e-07, Sum P(3) = 1.5e-07
Identities = 36/116 (31%), Positives = 54/116 (46%)
Query: 902 LAKVGWFRVVLDEAQSIKNHR---TQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRF 958
LAK+ W +++DE +KNH TQV + A RR L+GTP+QN + +L++ F
Sbjct: 862 LAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYV--APRRLLLTGTPLQNKLPELWALLNF 919
Query: 959 LRYDPFAVYKSFCSMIKVPISKNPVKG----------YKKLQAVLKTIMLRRTKGE 1004
L F +F P + K ++L VL+ +LRR K E
Sbjct: 920 LLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEETILIIRRLHKVLRPFLLRRLKKE 975
Score = 92 (37.4 bits), Expect = 1.5e-07, Sum P(3) = 1.5e-07
Identities = 22/43 (51%), Positives = 29/43 (67%)
Query: 667 LLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 709
L ++Q L W+V ++L+ GILAD+ GLGKTI TIALI
Sbjct: 746 LKQYQIKGLEWLVSLYNNNLN---GILADEMGLGKTIQTIALI 785
Score = 60 (26.2 bits), Expect = 1.5e-07, Sum P(3) = 1.5e-07
Identities = 17/57 (29%), Positives = 25/57 (43%)
Query: 781 LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDP-CELAKFDVVITTYSIV 836
L++ P S L WA E S +S + R P KF+V++TTY +
Sbjct: 799 LIIVPLSTLSNWAYEFDKWAPSVVKVSYKGSPAARRAFVPQLRSGKFNVLLTTYEYI 855
>UNIPROTKB|A7Z019 [details] [associations]
symbol:SMARCA4 "Transcription activator BRG1" species:9913
"Bos taurus" [GO:0071565 "nBAF complex" evidence=ISS] [GO:0071564
"npBAF complex" evidence=ISS] [GO:0060347 "heart trabecula
formation" evidence=IEA] [GO:0060318 "definitive erythrocyte
differentiation" evidence=IEA] [GO:0048730 "epidermis
morphogenesis" evidence=IEA] [GO:0048562 "embryonic organ
morphogenesis" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0043966 "histone H3 acetylation" evidence=IEA] [GO:0043388
"positive regulation of DNA binding" evidence=IEA] [GO:0035887
"aortic smooth muscle cell differentiation" evidence=IEA]
[GO:0035116 "embryonic hindlimb morphogenesis" evidence=IEA]
[GO:0030902 "hindbrain development" evidence=IEA] [GO:0030900
"forebrain development" evidence=IEA] [GO:0030216 "keratinocyte
differentiation" evidence=IEA] [GO:0030198 "extracellular matrix
organization" evidence=IEA] [GO:0019827 "stem cell maintenance"
evidence=IEA] [GO:0010424 "DNA methylation on cytosine within a CG
sequence" evidence=IEA] [GO:0008134 "transcription factor binding"
evidence=IEA] [GO:0007403 "glial cell fate determination"
evidence=IEA] [GO:0006346 "methylation-dependent chromatin
silencing" evidence=IEA] [GO:0006338 "chromatin remodeling"
evidence=IEA] [GO:0005726 "perichromatin fibrils" evidence=IEA]
[GO:0005719 "nuclear euchromatin" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0001889 "liver development"
evidence=IEA] [GO:0001835 "blastocyst hatching" evidence=IEA]
[GO:0001832 "blastocyst growth" evidence=IEA] [GO:0001570
"vasculogenesis" evidence=IEA] [GO:0000977 "RNA polymerase II
regulatory region sequence-specific DNA binding" evidence=IEA]
[GO:0000902 "cell morphogenesis" evidence=IEA] [GO:0000792
"heterochromatin" evidence=IEA] [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 InterPro:IPR006576 InterPro:IPR014978
Pfam:PF00176 Pfam:PF00271 Pfam:PF00439 Pfam:PF07533 Pfam:PF08880
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 SMART:SM00592 SMART:SM00951 GO:GO:0005524
GO:GO:0030216 GO:GO:0045944 GO:GO:0030198 GO:GO:0030900
GO:GO:0001889 GO:GO:0006351 GO:GO:0003682 GO:GO:0006338
GO:GO:0000122 GO:GO:0071564 GO:GO:0071565 GO:GO:0000902
GO:GO:0004386 GO:GO:0001570 GO:GO:0035116 GO:GO:0005719
GO:GO:0030902 GO:GO:0048730 GO:GO:0000977 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0019827
Gene3D:1.20.920.10 SUPFAM:SSF47370 PROSITE:PS00633
InterPro:IPR018359 GO:GO:0000792 GO:GO:0060347 GO:GO:0043966
GO:GO:0043388 KO:K11647 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
GO:GO:0001835 GO:GO:0007403 GO:GO:0006346 GO:GO:0010424
GO:GO:0060318 GO:GO:0048562 GO:GO:0001832 GO:GO:0005726
HOGENOM:HOG000172363 HOVERGEN:HBG056636 GO:GO:0035887
OrthoDB:EOG418BMJ EMBL:BC153216 IPI:IPI00693529
RefSeq:NP_001099084.1 UniGene:Bt.27590 ProteinModelPortal:A7Z019
SMR:A7Z019 STRING:A7Z019 PRIDE:A7Z019 GeneID:414274 KEGG:bta:414274
CTD:6597 InParanoid:A7Z019 NextBio:20818684 ArrayExpress:A7Z019
Uniprot:A7Z019
Length = 1606
Score = 114 (45.2 bits), Expect = 1.5e-07, Sum P(3) = 1.5e-07
Identities = 36/116 (31%), Positives = 54/116 (46%)
Query: 902 LAKVGWFRVVLDEAQSIKNHR---TQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRF 958
LAK+ W +++DE +KNH TQV + A RR L+GTP+QN + +L++ F
Sbjct: 862 LAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYV--APRRLLLTGTPLQNKLPELWALLNF 919
Query: 959 LRYDPFAVYKSFCSMIKVPISKNPVKG----------YKKLQAVLKTIMLRRTKGE 1004
L F +F P + K ++L VL+ +LRR K E
Sbjct: 920 LLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEETILIIRRLHKVLRPFLLRRLKKE 975
Score = 92 (37.4 bits), Expect = 1.5e-07, Sum P(3) = 1.5e-07
Identities = 22/43 (51%), Positives = 29/43 (67%)
Query: 667 LLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 709
L ++Q L W+V ++L+ GILAD+ GLGKTI TIALI
Sbjct: 746 LKQYQIKGLEWLVSLYNNNLN---GILADEMGLGKTIQTIALI 785
Score = 60 (26.2 bits), Expect = 1.5e-07, Sum P(3) = 1.5e-07
Identities = 17/57 (29%), Positives = 25/57 (43%)
Query: 781 LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDP-CELAKFDVVITTYSIV 836
L++ P S L WA E S +S + R P KF+V++TTY +
Sbjct: 799 LIIVPLSTLSNWAYEFDKWAPSVVKVSYKGSPAARRAFVPQLRSGKFNVLLTTYEYI 855
>UNIPROTKB|E2QWL4 [details] [associations]
symbol:BTAF1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR016024 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 OMA:TKQEGAI InterPro:IPR022707
Pfam:PF12054 GeneTree:ENSGT00630000089754 EMBL:AAEX03015408
Ensembl:ENSCAFT00000011817 NextBio:20860516 Uniprot:E2QWL4
Length = 1879
Score = 111 (44.1 bits), Expect = 1.5e-07, Sum P(5) = 1.5e-07
Identities = 27/68 (39%), Positives = 38/68 (55%)
Query: 911 VLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAVYKSF 970
+LDE IKN +T++++A L A R LSGTPIQN + +L+S F FL + F
Sbjct: 1402 ILDEGHVIKNGKTKLSKAVKQLTANYRIILSGTPIQNNVLELWSLFDFLMPGFLGTERQF 1461
Query: 971 CSMIKVPI 978
+ PI
Sbjct: 1462 AARYGKPI 1469
Score = 89 (36.4 bits), Expect = 1.5e-07, Sum P(5) = 1.5e-07
Identities = 27/91 (29%), Positives = 43/91 (47%)
Query: 619 GYPGVPLTGLGGMKSKASDERLILQVAMQGISQPNAEASAPDGVLAVPLLRHQRIALSWM 678
G P P ++ KA ER L+ + G N + P + L ++Q+ ++W+
Sbjct: 1222 GIPDPPNMSEELIQLKAK-ERHFLEQLLDGKKLENYKIPVP---INAELRKYQQDGVNWL 1277
Query: 679 VQKETSSLHCSGGILADDQGLGKTISTIALI 709
LH GIL DD GLGKT+ +I ++
Sbjct: 1278 AFLNKYKLH---GILCDDMGLGKTLQSICIL 1305
Score = 76 (31.8 bits), Expect = 1.5e-07, Sum P(5) = 1.5e-07
Identities = 17/63 (26%), Positives = 36/63 (57%)
Query: 780 TLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHG--SSRTKDPCELAKFDVVITTYSIVS 837
+LVVCP ++ W +E+ K SK L+ L Y G + R + ++ + ++++ +Y +V
Sbjct: 1329 SLVVCPPTLTGHWVDEV-GKFCSKEYLNPLHYTGPPTERIRLQHQVKRHNLIVASYDVVR 1387
Query: 838 MEV 840
++
Sbjct: 1388 NDI 1390
Score = 42 (19.8 bits), Expect = 1.5e-07, Sum P(5) = 1.5e-07
Identities = 9/17 (52%), Positives = 11/17 (64%)
Query: 278 YINTGDTIFGDPSSFNF 294
YI DTI DPS+ +F
Sbjct: 656 YIAGADTIMEDPSTRDF 672
Score = 39 (18.8 bits), Expect = 1.5e-07, Sum P(5) = 1.5e-07
Identities = 10/50 (20%), Positives = 23/50 (46%)
Query: 464 EEHEDLILESKRARFCQEICDGSSSRSPIDGRHLSLNLNGSRQYFPYAQP 513
+ E+ ++++ A+ ++ ++R+P + NL S PY P
Sbjct: 886 KREENTLVQNYAAQCIAKLLQQCTTRTPCPNSKIIKNLCSSLCVDPYLTP 935
Score = 38 (18.4 bits), Expect = 1.6e-07, Sum P(4) = 1.6e-07
Identities = 14/67 (20%), Positives = 29/67 (43%)
Query: 422 EAVGRNSSYHDGCNSFPFKDSGQ-SFIGLSPSLLSQNQVVHAKEEHEDLILESKR---AR 477
+AV N +D + P + + + + ++ S ++ E LI E+
Sbjct: 226 DAVETNEKSNDSTDGEPEEKRRKIANVVINQSANDSKVLIDNVPESSSLIEETNEWPLES 285
Query: 478 FCQEICD 484
FC+E+C+
Sbjct: 286 FCEELCN 292
>MGI|MGI:88192 [details] [associations]
symbol:Smarca4 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily a, member 4"
species:10090 "Mus musculus" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IMP;IDA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0000790 "nuclear
chromatin" evidence=ISO] [GO:0000792 "heterochromatin"
evidence=IDA] [GO:0000902 "cell morphogenesis" evidence=IMP]
[GO:0000977 "RNA polymerase II regulatory region sequence-specific
DNA binding" evidence=IDA] [GO:0001105 "RNA polymerase II
transcription coactivator activity" evidence=ISO] [GO:0001570
"vasculogenesis" evidence=IMP] [GO:0001701 "in utero embryonic
development" evidence=IMP] [GO:0001832 "blastocyst growth"
evidence=IMP] [GO:0001835 "blastocyst hatching" evidence=IMP]
[GO:0001889 "liver development" evidence=IMP] [GO:0002039 "p53
binding" evidence=ISO] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IDA] [GO:0003713 "transcription
coactivator activity" evidence=ISO] [GO:0003714 "transcription
corepressor activity" evidence=ISO] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO;IDA] [GO:0005719 "nuclear euchromatin" evidence=IDA]
[GO:0005726 "perichromatin fibrils" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] [GO:0006200 "ATP catabolic process"
evidence=TAS] [GO:0006334 "nucleosome assembly" evidence=TAS]
[GO:0006337 "nucleosome disassembly" evidence=ISO] [GO:0006338
"chromatin remodeling" evidence=ISO;IMP] [GO:0006346
"methylation-dependent chromatin silencing" evidence=IDA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0007399 "nervous system development"
evidence=IMP] [GO:0007403 "glial cell fate determination"
evidence=IMP] [GO:0007507 "heart development" evidence=IMP]
[GO:0008094 "DNA-dependent ATPase activity" evidence=ISO]
[GO:0008134 "transcription factor binding" evidence=IPI]
[GO:0010424 "DNA methylation on cytosine within a CG sequence"
evidence=IMP] [GO:0016514 "SWI/SNF complex" evidence=ISO;IDA;TAS]
[GO:0016568 "chromatin modification" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0016817 "hydrolase activity,
acting on acid anhydrides" evidence=IEA] [GO:0016818 "hydrolase
activity, acting on acid anhydrides, in phosphorus-containing
anhydrides" evidence=IEA] [GO:0016887 "ATPase activity"
evidence=IMP;TAS] [GO:0019827 "stem cell maintenance" evidence=IMP]
[GO:0022008 "neurogenesis" evidence=IDA] [GO:0030198 "extracellular
matrix organization" evidence=IMP] [GO:0030216 "keratinocyte
differentiation" evidence=IMP] [GO:0030308 "negative regulation of
cell growth" evidence=ISO] [GO:0030900 "forebrain development"
evidence=IMP] [GO:0030902 "hindbrain development" evidence=IMP]
[GO:0030957 "Tat protein binding" evidence=ISO] [GO:0032403
"protein complex binding" evidence=ISO] [GO:0035116 "embryonic
hindlimb morphogenesis" evidence=IMP] [GO:0035887 "aortic smooth
muscle cell differentiation" evidence=IMP] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=ISO] [GO:0043388
"positive regulation of DNA binding" evidence=IGI] [GO:0043923
"positive regulation by host of viral transcription" evidence=ISO]
[GO:0043966 "histone H3 acetylation" evidence=IMP] [GO:0045892
"negative regulation of transcription, DNA-dependent" evidence=ISO]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=ISO] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IGI;ISO;IMP] [GO:0047485
"protein N-terminus binding" evidence=ISO] [GO:0048562 "embryonic
organ morphogenesis" evidence=IMP] [GO:0048730 "epidermis
morphogenesis" evidence=IMP] [GO:0050681 "androgen receptor
binding" evidence=ISO] [GO:0051091 "positive regulation of
sequence-specific DNA binding transcription factor activity"
evidence=ISO] [GO:0060318 "definitive erythrocyte differentiation"
evidence=IMP] [GO:0060347 "heart trabecula formation" evidence=IGI]
[GO:0060766 "negative regulation of androgen receptor signaling
pathway" evidence=ISO] [GO:0070577 "histone acetyl-lysine binding"
evidence=ISO] [GO:0071564 "npBAF complex" evidence=ISO;IDA]
[GO:0071565 "nBAF complex" evidence=IDA] [GO:0071778 "WINAC
complex" evidence=ISO] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 InterPro:IPR006576 InterPro:IPR014978
Pfam:PF00176 Pfam:PF00271 Pfam:PF00439 Pfam:PF07533 Pfam:PF08880
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 SMART:SM00592 SMART:SM00951 MGI:MGI:88192
GO:GO:0005524 GO:GO:0003714 GO:GO:0030216 GO:GO:0045944
GO:GO:0030198 GO:GO:0030900 GO:GO:0001889 EMBL:CH466522
GO:GO:0006351 GO:GO:0003682 GO:GO:0016887 GO:GO:0006338
GO:GO:0000122 GO:GO:0071564 GO:GO:0016514 GO:GO:0071565
GO:GO:0000902 GO:GO:0004386 GO:GO:0001570 GO:GO:0035116
GO:GO:0005719 GO:GO:0030902 GO:GO:0048730 GO:GO:0000977
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0019827 GO:GO:0006334 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 GO:GO:0000792 GO:GO:0060347
GO:GO:0043966 GO:GO:0043388 KO:K11647 GeneTree:ENSGT00550000074659
InterPro:IPR013999 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 SMART:SM00573 PROSITE:PS51204 GO:GO:0001835
GO:GO:0007403 GO:GO:0006346 GO:GO:0010424 GO:GO:0060318
GO:GO:0048562 GO:GO:0001832 GO:GO:0005726 HOGENOM:HOG000172363
HOVERGEN:HBG056636 GO:GO:0035887 OrthoDB:EOG418BMJ CTD:6597
EMBL:AK147285 EMBL:AK160825 EMBL:AK166837 EMBL:BC079560
IPI:IPI00875789 IPI:IPI00955124 RefSeq:NP_001167549.1
RefSeq:NP_001167550.1 RefSeq:NP_035547.2 UniGene:Mm.286593
ProteinModelPortal:Q3TKT4 SMR:Q3TKT4 DIP:DIP-40650N DIP:DIP-59249N
IntAct:Q3TKT4 MINT:MINT-1958721 STRING:Q3TKT4 PhosphoSite:Q3TKT4
PaxDb:Q3TKT4 PRIDE:Q3TKT4 Ensembl:ENSMUST00000034707
Ensembl:ENSMUST00000098948 Ensembl:ENSMUST00000174008 GeneID:20586
KEGG:mmu:20586 UCSC:uc009omd.2 UCSC:uc009ome.2 InParanoid:Q3TUD7
NextBio:298883 Bgee:Q3TKT4 Genevestigator:Q3TKT4 Uniprot:Q3TKT4
Length = 1613
Score = 114 (45.2 bits), Expect = 1.5e-07, Sum P(3) = 1.5e-07
Identities = 36/116 (31%), Positives = 54/116 (46%)
Query: 902 LAKVGWFRVVLDEAQSIKNHR---TQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRF 958
LAK+ W +++DE +KNH TQV + A RR L+GTP+QN + +L++ F
Sbjct: 870 LAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYV--APRRLLLTGTPLQNKLPELWALLNF 927
Query: 959 LRYDPFAVYKSFCSMIKVPISKNPVKG----------YKKLQAVLKTIMLRRTKGE 1004
L F +F P + K ++L VL+ +LRR K E
Sbjct: 928 LLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEETILIIRRLHKVLRPFLLRRLKKE 983
Score = 92 (37.4 bits), Expect = 1.5e-07, Sum P(3) = 1.5e-07
Identities = 22/43 (51%), Positives = 29/43 (67%)
Query: 667 LLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 709
L ++Q L W+V ++L+ GILAD+ GLGKTI TIALI
Sbjct: 754 LKQYQIKGLEWLVSLYNNNLN---GILADEMGLGKTIQTIALI 793
Score = 60 (26.2 bits), Expect = 1.5e-07, Sum P(3) = 1.5e-07
Identities = 17/57 (29%), Positives = 25/57 (43%)
Query: 781 LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDP-CELAKFDVVITTYSIV 836
L++ P S L WA E S +S + R P KF+V++TTY +
Sbjct: 807 LIIVPLSTLSNWAYEFDKWAPSVVKVSYKGSPAARRAFVPQLRSGKFNVLLTTYEYI 863
>RGD|621728 [details] [associations]
symbol:Smarca4 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily a, member 4"
species:10116 "Rattus norvegicus" [GO:0000122 "negative regulation
of transcription from RNA polymerase II promoter" evidence=ISO]
[GO:0000790 "nuclear chromatin" evidence=ISO] [GO:0000792
"heterochromatin" evidence=ISO] [GO:0000902 "cell morphogenesis"
evidence=ISO] [GO:0000977 "RNA polymerase II regulatory region
sequence-specific DNA binding" evidence=ISO] [GO:0001105 "RNA
polymerase II transcription coactivator activity" evidence=ISO]
[GO:0001570 "vasculogenesis" evidence=ISO] [GO:0001701 "in utero
embryonic development" evidence=ISO] [GO:0001832 "blastocyst
growth" evidence=ISO] [GO:0001835 "blastocyst hatching"
evidence=ISO] [GO:0001889 "liver development" evidence=ISO]
[GO:0002039 "p53 binding" evidence=ISO] [GO:0003407 "neural retina
development" evidence=ISO] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=ISO] [GO:0003713
"transcription coactivator activity" evidence=ISO] [GO:0003714
"transcription corepressor activity" evidence=ISO;ISS] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISO;IDA] [GO:0005719 "nuclear euchromatin"
evidence=ISO] [GO:0005726 "perichromatin fibrils" evidence=ISO]
[GO:0006337 "nucleosome disassembly" evidence=ISO;IDA] [GO:0006338
"chromatin remodeling" evidence=ISO] [GO:0006346
"methylation-dependent chromatin silencing" evidence=ISO]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0007399 "nervous system development"
evidence=IEA;ISO] [GO:0007403 "glial cell fate determination"
evidence=ISO] [GO:0007507 "heart development" evidence=ISO]
[GO:0008094 "DNA-dependent ATPase activity" evidence=ISO]
[GO:0008134 "transcription factor binding" evidence=ISO]
[GO:0010424 "DNA methylation on cytosine within a CG sequence"
evidence=ISO] [GO:0016514 "SWI/SNF complex" evidence=ISO;IDA]
[GO:0016887 "ATPase activity" evidence=ISO] [GO:0019827 "stem cell
maintenance" evidence=ISO] [GO:0022008 "neurogenesis" evidence=ISO]
[GO:0030198 "extracellular matrix organization" evidence=ISO]
[GO:0030216 "keratinocyte differentiation" evidence=ISO]
[GO:0030308 "negative regulation of cell growth" evidence=ISO]
[GO:0030900 "forebrain development" evidence=ISO] [GO:0030902
"hindbrain development" evidence=ISO] [GO:0030957 "Tat protein
binding" evidence=ISO] [GO:0032403 "protein complex binding"
evidence=IDA] [GO:0035116 "embryonic hindlimb morphogenesis"
evidence=ISO] [GO:0035887 "aortic smooth muscle cell
differentiation" evidence=ISO] [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=IDA] [GO:0043388 "positive regulation of DNA
binding" evidence=ISO] [GO:0043923 "positive regulation by host of
viral transcription" evidence=ISO] [GO:0043966 "histone H3
acetylation" evidence=ISO] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=ISO] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=ISO]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=ISO] [GO:0047485 "protein
N-terminus binding" evidence=ISO] [GO:0048562 "embryonic organ
morphogenesis" evidence=ISO] [GO:0048730 "epidermis morphogenesis"
evidence=ISO] [GO:0050681 "androgen receptor binding" evidence=ISO]
[GO:0051091 "positive regulation of sequence-specific DNA binding
transcription factor activity" evidence=ISO] [GO:0060318
"definitive erythrocyte differentiation" evidence=ISO] [GO:0060347
"heart trabecula formation" evidence=ISO] [GO:0060766 "negative
regulation of androgen receptor signaling pathway" evidence=ISO]
[GO:0070577 "histone acetyl-lysine binding" evidence=ISO]
[GO:0071564 "npBAF complex" evidence=ISO;ISS] [GO:0071565 "nBAF
complex" evidence=ISO;ISS] [GO:0071778 "WINAC complex"
evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
InterPro:IPR006576 InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271
Pfam:PF00439 Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00490
SMART:SM00592 SMART:SM00951 RGD:621728 GO:GO:0005524 GO:GO:0003714
GO:GO:0007399 GO:GO:0006355 GO:GO:0032403 GO:GO:0003677
GO:GO:0006351 GO:GO:0071564 GO:GO:0016514 GO:GO:0071565
GO:GO:0004386 GO:GO:0006337 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0043044 Gene3D:1.20.920.10
SUPFAM:SSF47370 PROSITE:PS00633 InterPro:IPR018359
InterPro:IPR013999 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 SMART:SM00573 PROSITE:PS51204 HOGENOM:HOG000172363
HOVERGEN:HBG056636 EMBL:AJ504723 IPI:IPI00781891 UniGene:Rn.23417
ProteinModelPortal:Q8K1P7 SMR:Q8K1P7 IntAct:Q8K1P7 STRING:Q8K1P7
PhosphoSite:Q8K1P7 PRIDE:Q8K1P7 UCSC:RGD:621728 ArrayExpress:Q8K1P7
Genevestigator:Q8K1P7 Uniprot:Q8K1P7
Length = 1613
Score = 114 (45.2 bits), Expect = 1.5e-07, Sum P(3) = 1.5e-07
Identities = 36/116 (31%), Positives = 54/116 (46%)
Query: 902 LAKVGWFRVVLDEAQSIKNHR---TQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRF 958
LAK+ W +++DE +KNH TQV + A RR L+GTP+QN + +L++ F
Sbjct: 870 LAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYV--APRRLLLTGTPLQNKLPELWALLNF 927
Query: 959 LRYDPFAVYKSFCSMIKVPISKNPVKG----------YKKLQAVLKTIMLRRTKGE 1004
L F +F P + K ++L VL+ +LRR K E
Sbjct: 928 LLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEETILIIRRLHKVLRPFLLRRLKKE 983
Score = 92 (37.4 bits), Expect = 1.5e-07, Sum P(3) = 1.5e-07
Identities = 22/43 (51%), Positives = 29/43 (67%)
Query: 667 LLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 709
L ++Q L W+V ++L+ GILAD+ GLGKTI TIALI
Sbjct: 754 LKQYQIKGLEWLVSLYNNNLN---GILADEMGLGKTIQTIALI 793
Score = 60 (26.2 bits), Expect = 1.5e-07, Sum P(3) = 1.5e-07
Identities = 17/57 (29%), Positives = 25/57 (43%)
Query: 781 LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDP-CELAKFDVVITTYSIV 836
L++ P S L WA E S +S + R P KF+V++TTY +
Sbjct: 807 LIIVPLSTLSNWAYEFDKWAPSVVKVSYKGSPAARRAFVPQLRSGKFNVLLTTYEYI 863
>UNIPROTKB|E2RJ89 [details] [associations]
symbol:SMARCA4 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
InterPro:IPR006576 InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271
Pfam:PF00439 Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00490
SMART:SM00592 SMART:SM00951 GO:GO:0005524 GO:GO:0005634
GO:GO:0006355 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 KO:K11647
GeneTree:ENSGT00550000074659 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
CTD:6597 EMBL:AAEX03012414 RefSeq:XP_867683.1
Ensembl:ENSCAFT00000027907 GeneID:476710 KEGG:cfa:476710
OMA:HKPMESM Uniprot:E2RJ89
Length = 1614
Score = 114 (45.2 bits), Expect = 1.5e-07, Sum P(3) = 1.5e-07
Identities = 36/116 (31%), Positives = 54/116 (46%)
Query: 902 LAKVGWFRVVLDEAQSIKNHR---TQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRF 958
LAK+ W +++DE +KNH TQV + A RR L+GTP+QN + +L++ F
Sbjct: 870 LAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYV--APRRLLLTGTPLQNKLPELWALLNF 927
Query: 959 LRYDPFAVYKSFCSMIKVPISKNPVKG----------YKKLQAVLKTIMLRRTKGE 1004
L F +F P + K ++L VL+ +LRR K E
Sbjct: 928 LLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEETILIIRRLHKVLRPFLLRRLKKE 983
Score = 92 (37.4 bits), Expect = 1.5e-07, Sum P(3) = 1.5e-07
Identities = 22/43 (51%), Positives = 29/43 (67%)
Query: 667 LLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 709
L ++Q L W+V ++L+ GILAD+ GLGKTI TIALI
Sbjct: 754 LKQYQIKGLEWLVSLYNNNLN---GILADEMGLGKTIQTIALI 793
Score = 60 (26.2 bits), Expect = 1.5e-07, Sum P(3) = 1.5e-07
Identities = 17/57 (29%), Positives = 25/57 (43%)
Query: 781 LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDP-CELAKFDVVITTYSIV 836
L++ P S L WA E S +S + R P KF+V++TTY +
Sbjct: 807 LIIVPLSTLSNWAYEFDKWAPSVVKVSYKGSPAARRAFVPQLRSGKFNVLLTTYEYI 863
>UNIPROTKB|G3V790 [details] [associations]
symbol:Smarca4 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily a, member 4, isoform
CRA_b" species:10116 "Rattus norvegicus" [GO:0000122 "negative
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0000792 "heterochromatin" evidence=IEA]
[GO:0000902 "cell morphogenesis" evidence=IEA] [GO:0000977 "RNA
polymerase II regulatory region sequence-specific DNA binding"
evidence=IEA] [GO:0001570 "vasculogenesis" evidence=IEA]
[GO:0001832 "blastocyst growth" evidence=IEA] [GO:0001835
"blastocyst hatching" evidence=IEA] [GO:0001889 "liver development"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005719 "nuclear euchromatin"
evidence=IEA] [GO:0005726 "perichromatin fibrils" evidence=IEA]
[GO:0006338 "chromatin remodeling" evidence=IEA] [GO:0006346
"methylation-dependent chromatin silencing" evidence=IEA]
[GO:0007403 "glial cell fate determination" evidence=IEA]
[GO:0008134 "transcription factor binding" evidence=IEA]
[GO:0010424 "DNA methylation on cytosine within a CG sequence"
evidence=IEA] [GO:0019827 "stem cell maintenance" evidence=IEA]
[GO:0030198 "extracellular matrix organization" evidence=IEA]
[GO:0030216 "keratinocyte differentiation" evidence=IEA]
[GO:0030900 "forebrain development" evidence=IEA] [GO:0030902
"hindbrain development" evidence=IEA] [GO:0035116 "embryonic
hindlimb morphogenesis" evidence=IEA] [GO:0035887 "aortic smooth
muscle cell differentiation" evidence=IEA] [GO:0043388 "positive
regulation of DNA binding" evidence=IEA] [GO:0043966 "histone H3
acetylation" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0048562 "embryonic organ morphogenesis" evidence=IEA]
[GO:0048730 "epidermis morphogenesis" evidence=IEA] [GO:0060318
"definitive erythrocyte differentiation" evidence=IEA] [GO:0060347
"heart trabecula formation" evidence=IEA] [GO:0071564 "npBAF
complex" evidence=IEA] [GO:0071565 "nBAF complex" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
InterPro:IPR006576 InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271
Pfam:PF00439 Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00490
SMART:SM00592 SMART:SM00951 RGD:621728 GO:GO:0005524 GO:GO:0005634
GO:GO:0006355 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 GeneTree:ENSGT00550000074659
InterPro:IPR013999 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 SMART:SM00573 PROSITE:PS51204 EMBL:CH473993
UniGene:Rn.23417 Ensembl:ENSRNOT00000013165 Uniprot:G3V790
Length = 1614
Score = 114 (45.2 bits), Expect = 1.5e-07, Sum P(3) = 1.5e-07
Identities = 36/116 (31%), Positives = 54/116 (46%)
Query: 902 LAKVGWFRVVLDEAQSIKNHR---TQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRF 958
LAK+ W +++DE +KNH TQV + A RR L+GTP+QN + +L++ F
Sbjct: 870 LAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYV--APRRLLLTGTPLQNKLPELWALLNF 927
Query: 959 LRYDPFAVYKSFCSMIKVPISKNPVKG----------YKKLQAVLKTIMLRRTKGE 1004
L F +F P + K ++L VL+ +LRR K E
Sbjct: 928 LLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEETILIIRRLHKVLRPFLLRRLKKE 983
Score = 92 (37.4 bits), Expect = 1.5e-07, Sum P(3) = 1.5e-07
Identities = 22/43 (51%), Positives = 29/43 (67%)
Query: 667 LLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 709
L ++Q L W+V ++L+ GILAD+ GLGKTI TIALI
Sbjct: 754 LKQYQIKGLEWLVSLYNNNLN---GILADEMGLGKTIQTIALI 793
Score = 60 (26.2 bits), Expect = 1.5e-07, Sum P(3) = 1.5e-07
Identities = 17/57 (29%), Positives = 25/57 (43%)
Query: 781 LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDP-CELAKFDVVITTYSIV 836
L++ P S L WA E S +S + R P KF+V++TTY +
Sbjct: 807 LIIVPLSTLSNWAYEFDKWAPSVVKVSYKGSPAARRAFVPQLRSGKFNVLLTTYEYI 863
>UNIPROTKB|F1M6Y4 [details] [associations]
symbol:Smarca4 "Transcription activator BRG1" species:10116
"Rattus norvegicus" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0000792 "heterochromatin" evidence=IEA] [GO:0000902 "cell
morphogenesis" evidence=IEA] [GO:0000977 "RNA polymerase II
regulatory region sequence-specific DNA binding" evidence=IEA]
[GO:0001570 "vasculogenesis" evidence=IEA] [GO:0001832 "blastocyst
growth" evidence=IEA] [GO:0001835 "blastocyst hatching"
evidence=IEA] [GO:0001889 "liver development" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005719 "nuclear euchromatin" evidence=IEA] [GO:0005726
"perichromatin fibrils" evidence=IEA] [GO:0006338 "chromatin
remodeling" evidence=IEA] [GO:0006346 "methylation-dependent
chromatin silencing" evidence=IEA] [GO:0007403 "glial cell fate
determination" evidence=IEA] [GO:0008134 "transcription factor
binding" evidence=IEA] [GO:0010424 "DNA methylation on cytosine
within a CG sequence" evidence=IEA] [GO:0019827 "stem cell
maintenance" evidence=IEA] [GO:0030198 "extracellular matrix
organization" evidence=IEA] [GO:0030216 "keratinocyte
differentiation" evidence=IEA] [GO:0030900 "forebrain development"
evidence=IEA] [GO:0030902 "hindbrain development" evidence=IEA]
[GO:0035116 "embryonic hindlimb morphogenesis" evidence=IEA]
[GO:0035887 "aortic smooth muscle cell differentiation"
evidence=IEA] [GO:0043388 "positive regulation of DNA binding"
evidence=IEA] [GO:0043966 "histone H3 acetylation" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0048562 "embryonic organ
morphogenesis" evidence=IEA] [GO:0048730 "epidermis morphogenesis"
evidence=IEA] [GO:0060318 "definitive erythrocyte differentiation"
evidence=IEA] [GO:0060347 "heart trabecula formation" evidence=IEA]
[GO:0071564 "npBAF complex" evidence=IEA] [GO:0071565 "nBAF
complex" evidence=IEA] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 InterPro:IPR006576 InterPro:IPR014978
Pfam:PF00176 Pfam:PF00271 Pfam:PF00439 Pfam:PF07533 Pfam:PF08880
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 SMART:SM00592 SMART:SM00951 RGD:621728 GO:GO:0005524
GO:GO:0030216 GO:GO:0045944 GO:GO:0030198 GO:GO:0030900
GO:GO:0001889 GO:GO:0003682 GO:GO:0006338 GO:GO:0000122
GO:GO:0071564 GO:GO:0071565 GO:GO:0000902 GO:GO:0004386
GO:GO:0001570 GO:GO:0035116 GO:GO:0005719 GO:GO:0030902
GO:GO:0048730 GO:GO:0000977 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0019827 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 GO:GO:0000792 GO:GO:0060347
GO:GO:0043966 GO:GO:0043388 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
GO:GO:0001835 GO:GO:0007403 GO:GO:0006346 GO:GO:0010424
GO:GO:0060318 GO:GO:0048562 GO:GO:0001832 GO:GO:0005726
GO:GO:0035887 IPI:IPI00951882 Ensembl:ENSRNOT00000060927
ArrayExpress:F1M6Y4 Uniprot:F1M6Y4
Length = 1618
Score = 114 (45.2 bits), Expect = 1.6e-07, Sum P(3) = 1.6e-07
Identities = 36/116 (31%), Positives = 54/116 (46%)
Query: 902 LAKVGWFRVVLDEAQSIKNHR---TQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRF 958
LAK+ W +++DE +KNH TQV + A RR L+GTP+QN + +L++ F
Sbjct: 870 LAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYV--APRRLLLTGTPLQNKLPELWALLNF 927
Query: 959 LRYDPFAVYKSFCSMIKVPISKNPVKG----------YKKLQAVLKTIMLRRTKGE 1004
L F +F P + K ++L VL+ +LRR K E
Sbjct: 928 LLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEETILIIRRLHKVLRPFLLRRLKKE 983
Score = 92 (37.4 bits), Expect = 1.6e-07, Sum P(3) = 1.6e-07
Identities = 22/43 (51%), Positives = 29/43 (67%)
Query: 667 LLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 709
L ++Q L W+V ++L+ GILAD+ GLGKTI TIALI
Sbjct: 754 LKQYQIKGLEWLVSLYNNNLN---GILADEMGLGKTIQTIALI 793
Score = 60 (26.2 bits), Expect = 1.6e-07, Sum P(3) = 1.6e-07
Identities = 17/57 (29%), Positives = 25/57 (43%)
Query: 781 LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDP-CELAKFDVVITTYSIV 836
L++ P S L WA E S +S + R P KF+V++TTY +
Sbjct: 807 LIIVPLSTLSNWAYEFDKWAPSVVKVSYKGSPAARRAFVPQLRSGKFNVLLTTYEYI 863
>UNIPROTKB|P51532 [details] [associations]
symbol:SMARCA4 "Transcription activator BRG1" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0007399 "nervous system development"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0047485 "protein N-terminus binding" evidence=IPI] [GO:0016514
"SWI/SNF complex" evidence=IDA] [GO:0003714 "transcription
corepressor activity" evidence=IDA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0071564 "npBAF complex" evidence=ISS;IDA]
[GO:0071565 "nBAF complex" evidence=ISS] [GO:0006338 "chromatin
remodeling" evidence=IC;IDA] [GO:0001105 "RNA polymerase II
transcription coactivator activity" evidence=IDA] [GO:0000790
"nuclear chromatin" evidence=IDA] [GO:0071778 "WINAC complex"
evidence=IDA] [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=IMP;IDA] [GO:0030308 "negative regulation
of cell growth" evidence=IMP] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IGI;IDA]
[GO:0060766 "negative regulation of androgen receptor signaling
pathway" evidence=IMP] [GO:0050681 "androgen receptor binding"
evidence=IPI] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IGI] [GO:0045749 "negative regulation of S phase of
mitotic cell cycle" evidence=TAS] [GO:0070577 "histone
acetyl-lysine binding" evidence=IDA] [GO:0051091 "positive
regulation of sequence-specific DNA binding transcription factor
activity" evidence=IDA] [GO:0002039 "p53 binding" evidence=IPI]
[GO:0000122 "negative regulation of transcription from RNA
polymerase II promoter" evidence=TAS] [GO:0003713 "transcription
coactivator activity" evidence=IMP;NAS] [GO:0006357 "regulation of
transcription from RNA polymerase II promoter" evidence=NAS]
[GO:0006337 "nucleosome disassembly" evidence=IDA] [GO:0043923
"positive regulation by host of viral transcription" evidence=IMP]
[GO:0030957 "Tat protein binding" evidence=IPI] [GO:0003407 "neural
retina development" evidence=IEP] [GO:0045893 "positive regulation
of transcription, DNA-dependent" evidence=IMP] InterPro:IPR000330
InterPro:IPR001487 InterPro:IPR001650 InterPro:IPR006576
InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503 PROSITE:PS50014
PROSITE:PS51194 SMART:SM00297 SMART:SM00490 SMART:SM00592
SMART:SM00951 GO:GO:0005524 GO:GO:0003714 GO:GO:0007399
GO:GO:0051091 GO:GO:0030308 GO:GO:0003677 GO:GO:0006338
GO:GO:0000122 GO:GO:0000790 GO:GO:0071564 GO:GO:0016514
GO:GO:0003407 GO:GO:0071565 GO:GO:0004386 EMBL:CH471106
GO:GO:0001105 GO:GO:0045749 Orphanet:1465 GO:GO:0006337
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
Gene3D:1.20.920.10 SUPFAM:SSF47370 PROSITE:PS00633 GO:GO:0070577
InterPro:IPR018359 GO:GO:0071778 KO:K11647 InterPro:IPR013999
InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529 SMART:SM00573
PROSITE:PS51204 EMBL:AC011442 GO:GO:0008094 GO:GO:0060766
GO:GO:0043923 EMBL:AC011485 HOGENOM:HOG000172363 HOVERGEN:HBG056636
CTD:6597 EMBL:U29175 EMBL:D26156 EMBL:AF254822 EMBL:EU430756
EMBL:EU430757 EMBL:EU430758 EMBL:EU430759 EMBL:AC006127
IPI:IPI00293426 IPI:IPI00900285 IPI:IPI00900328 IPI:IPI00900338
IPI:IPI01016040 PIR:S45252 RefSeq:NP_001122316.1
RefSeq:NP_001122317.1 RefSeq:NP_001122318.1 RefSeq:NP_001122319.1
RefSeq:NP_001122320.1 RefSeq:NP_003063.2 UniGene:Hs.327527 PDB:2GRC
PDB:2H60 PDB:3UVD PDBsum:2GRC PDBsum:2H60 PDBsum:3UVD
ProteinModelPortal:P51532 SMR:P51532 DIP:DIP-24249N IntAct:P51532
MINT:MINT-204078 STRING:P51532 PhosphoSite:P51532 DMDM:116242792
PaxDb:P51532 PRIDE:P51532 Ensembl:ENST00000344626
Ensembl:ENST00000413806 Ensembl:ENST00000429416
Ensembl:ENST00000444061 Ensembl:ENST00000450717
Ensembl:ENST00000541122 GeneID:6597 KEGG:hsa:6597 UCSC:uc002mqf.4
GeneCards:GC19P011071 HGNC:HGNC:11100 HPA:CAB004208 MIM:603254
MIM:613325 MIM:614609 neXtProt:NX_P51532 Orphanet:231108
PharmGKB:PA35950 ChiTaRS:SMARCA4 EvolutionaryTrace:P51532
GenomeRNAi:6597 NextBio:25661 ArrayExpress:P51532 Bgee:P51532
CleanEx:HS_SMARCA4 Genevestigator:P51532 GermOnline:ENSG00000127616
Uniprot:P51532
Length = 1647
Score = 114 (45.2 bits), Expect = 1.6e-07, Sum P(3) = 1.6e-07
Identities = 36/116 (31%), Positives = 54/116 (46%)
Query: 902 LAKVGWFRVVLDEAQSIKNHR---TQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRF 958
LAK+ W +++DE +KNH TQV + A RR L+GTP+QN + +L++ F
Sbjct: 870 LAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYV--APRRLLLTGTPLQNKLPELWALLNF 927
Query: 959 LRYDPFAVYKSFCSMIKVPISKNPVKG----------YKKLQAVLKTIMLRRTKGE 1004
L F +F P + K ++L VL+ +LRR K E
Sbjct: 928 LLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEETILIIRRLHKVLRPFLLRRLKKE 983
Score = 92 (37.4 bits), Expect = 1.6e-07, Sum P(3) = 1.6e-07
Identities = 22/43 (51%), Positives = 29/43 (67%)
Query: 667 LLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 709
L ++Q L W+V ++L+ GILAD+ GLGKTI TIALI
Sbjct: 754 LKQYQIKGLEWLVSLYNNNLN---GILADEMGLGKTIQTIALI 793
Score = 60 (26.2 bits), Expect = 1.6e-07, Sum P(3) = 1.6e-07
Identities = 17/57 (29%), Positives = 25/57 (43%)
Query: 781 LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDP-CELAKFDVVITTYSIV 836
L++ P S L WA E S +S + R P KF+V++TTY +
Sbjct: 807 LIIVPLSTLSNWAYEFDKWAPSVVKVSYKGSPAARRAFVPQLRSGKFNVLLTTYEYI 863
>UNIPROTKB|E1BPM4 [details] [associations]
symbol:CHD7 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0060324 "face development" evidence=IEA] [GO:0060123
"regulation of growth hormone secretion" evidence=IEA] [GO:0060041
"retina development in camera-type eye" evidence=IEA] [GO:0060021
"palate development" evidence=IEA] [GO:0050890 "cognition"
evidence=IEA] [GO:0048844 "artery morphogenesis" evidence=IEA]
[GO:0048752 "semicircular canal morphogenesis" evidence=IEA]
[GO:0043584 "nose development" evidence=IEA] [GO:0040018 "positive
regulation of multicellular organism growth" evidence=IEA]
[GO:0035116 "embryonic hindlimb morphogenesis" evidence=IEA]
[GO:0030540 "female genitalia development" evidence=IEA]
[GO:0030217 "T cell differentiation" evidence=IEA] [GO:0021545
"cranial nerve development" evidence=IEA] [GO:0008015 "blood
circulation" evidence=IEA] [GO:0007628 "adult walking behavior"
evidence=IEA] [GO:0007605 "sensory perception of sound"
evidence=IEA] [GO:0007512 "adult heart development" evidence=IEA]
[GO:0007417 "central nervous system development" evidence=IEA]
[GO:0003007 "heart morphogenesis" evidence=IEA] [GO:0001701 "in
utero embryonic development" evidence=IEA] [GO:0001501 "skeletal
system development" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271
Pfam:PF07533 PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298
SMART:SM00490 SMART:SM00592 SMART:SM00717 Pfam:PF00385
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0008015
GO:GO:0003007 GO:GO:0050890 GO:GO:0001701 GO:GO:0040018
GO:GO:0007417 GO:GO:0003682 GO:GO:0001501 GO:GO:0060041
GO:GO:0007605 GO:GO:0007512 GO:GO:0004386 GO:GO:0035116
GO:GO:0060324 GO:GO:0060021 GO:GO:0048844 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0030540 GO:GO:0007628 GO:GO:0030217 GO:GO:0048752
InterPro:IPR023780 OMA:TFGVIFD GO:GO:0021545 GO:GO:0043584
GO:GO:0060123 GeneTree:ENSGT00560000077077 EMBL:DAAA02038386
EMBL:DAAA02038387 EMBL:DAAA02038388 IPI:IPI00697020
Ensembl:ENSBTAT00000026607 Uniprot:E1BPM4
Length = 2940
Score = 135 (52.6 bits), Expect = 1.7e-07, Sum P(3) = 1.7e-07
Identities = 35/104 (33%), Positives = 55/104 (52%)
Query: 902 LAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRY 961
L + W VV+DEA +KN ++ + + + L+GTP+QN +++L+S FL
Sbjct: 1044 LRNIPWRCVVIDEAHRLKNRNCKLLEGLKMMDLEHKVLLTGTPLQNTVEELFSLLHFLEP 1103
Query: 962 DPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGED 1005
F +F ++ V+ KLQA+LK +MLRR K ED
Sbjct: 1104 TRFPSETTFMQEFGDLKTEEQVQ---KLQAILKPMMLRRLK-ED 1143
Score = 74 (31.1 bits), Expect = 1.7e-07, Sum P(3) = 1.7e-07
Identities = 29/100 (29%), Positives = 44/100 (44%)
Query: 760 GSSAKSFNFVEQAKGRPAAGT-LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSS--- 815
G + +S F+ + + G LV+ P S + W E R L+V+VYHGS
Sbjct: 948 GKTIQSITFLYEIYLKGIHGPFLVIAPLSTIPNWEREFRTWT----ELNVVVYHGSQASR 1003
Query: 816 RT--------KDPCELA-----KFDVVITTYSIVSMEVPK 842
RT KDP KF +ITT+ ++ + P+
Sbjct: 1004 RTIQLYEMYFKDPQGRVIKGSYKFHAIITTFEMILTDCPE 1043
Score = 64 (27.6 bits), Expect = 1.7e-07, Sum P(3) = 1.7e-07
Identities = 15/43 (34%), Positives = 25/43 (58%)
Query: 667 LLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 709
L +Q ++W++ + +C ILAD+ GLGKTI +I +
Sbjct: 918 LREYQLEGVNWLLFNWYNMRNC---ILADEMGLGKTIQSITFL 957
>UNIPROTKB|Q9HBD4 [details] [associations]
symbol:SMARCA4 "SMARCA4 isoform 2" species:9606 "Homo
sapiens" [GO:0004386 "helicase activity" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0000792 "heterochromatin" evidence=IEA] [GO:0000902 "cell
morphogenesis" evidence=IEA] [GO:0000977 "RNA polymerase II
regulatory region sequence-specific DNA binding" evidence=IEA]
[GO:0001570 "vasculogenesis" evidence=IEA] [GO:0001832 "blastocyst
growth" evidence=IEA] [GO:0001835 "blastocyst hatching"
evidence=IEA] [GO:0001889 "liver development" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0005719 "nuclear
euchromatin" evidence=IEA] [GO:0005726 "perichromatin fibrils"
evidence=IEA] [GO:0006338 "chromatin remodeling" evidence=IEA]
[GO:0006346 "methylation-dependent chromatin silencing"
evidence=IEA] [GO:0007403 "glial cell fate determination"
evidence=IEA] [GO:0008134 "transcription factor binding"
evidence=IEA] [GO:0010424 "DNA methylation on cytosine within a CG
sequence" evidence=IEA] [GO:0019827 "stem cell maintenance"
evidence=IEA] [GO:0030198 "extracellular matrix organization"
evidence=IEA] [GO:0030216 "keratinocyte differentiation"
evidence=IEA] [GO:0030900 "forebrain development" evidence=IEA]
[GO:0030902 "hindbrain development" evidence=IEA] [GO:0035116
"embryonic hindlimb morphogenesis" evidence=IEA] [GO:0035887
"aortic smooth muscle cell differentiation" evidence=IEA]
[GO:0043388 "positive regulation of DNA binding" evidence=IEA]
[GO:0043966 "histone H3 acetylation" evidence=IEA] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0048562 "embryonic organ morphogenesis"
evidence=IEA] [GO:0048730 "epidermis morphogenesis" evidence=IEA]
[GO:0060318 "definitive erythrocyte differentiation" evidence=IEA]
[GO:0060347 "heart trabecula formation" evidence=IEA] [GO:0071564
"npBAF complex" evidence=IEA] [GO:0071565 "nBAF complex"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 InterPro:IPR006576 InterPro:IPR014978
Pfam:PF00176 Pfam:PF00271 Pfam:PF00439 Pfam:PF07533 Pfam:PF08880
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 SMART:SM00592 SMART:SM00951 GO:GO:0005524
GO:GO:0030216 GO:GO:0045944 GO:GO:0030198 GO:GO:0030900
GO:GO:0001889 GO:GO:0003682 GO:GO:0006338 GO:GO:0000122
GO:GO:0071564 GO:GO:0071565 GO:GO:0000902 GO:GO:0004386
GO:GO:0001570 GO:GO:0035116 GO:GO:0005719 GO:GO:0030902
EMBL:CH471106 GO:GO:0048730 GO:GO:0000977 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0019827 Gene3D:1.20.920.10
SUPFAM:SSF47370 PROSITE:PS00633 InterPro:IPR018359 GO:GO:0000792
GO:GO:0060347 GO:GO:0043966 GO:GO:0043388 KO:K11647
InterPro:IPR013999 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 SMART:SM00573 PROSITE:PS51204 EMBL:AC011442
GO:GO:0001835 GO:GO:0007403 GO:GO:0006346 GO:GO:0010424
GO:GO:0060318 GO:GO:0048562 GO:GO:0001832 EMBL:AC011485
GO:GO:0005726 HOGENOM:HOG000172363 HOVERGEN:HBG056636 GO:GO:0035887
CTD:6597 EMBL:AF254822 EMBL:AC006127 UniGene:Hs.327527 GeneID:6597
KEGG:hsa:6597 HGNC:HGNC:11100 PharmGKB:PA35950 ChiTaRS:SMARCA4
GenomeRNAi:6597 NextBio:25661 IPI:IPI00900269 RefSeq:NP_001122321.1
SMR:Q9HBD4 STRING:Q9HBD4 Ensembl:ENST00000358026 UCSC:uc010dxo.3
Uniprot:Q9HBD4
Length = 1679
Score = 114 (45.2 bits), Expect = 1.7e-07, Sum P(3) = 1.7e-07
Identities = 36/116 (31%), Positives = 54/116 (46%)
Query: 902 LAKVGWFRVVLDEAQSIKNHR---TQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRF 958
LAK+ W +++DE +KNH TQV + A RR L+GTP+QN + +L++ F
Sbjct: 870 LAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYV--APRRLLLTGTPLQNKLPELWALLNF 927
Query: 959 LRYDPFAVYKSFCSMIKVPISKNPVKG----------YKKLQAVLKTIMLRRTKGE 1004
L F +F P + K ++L VL+ +LRR K E
Sbjct: 928 LLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEETILIIRRLHKVLRPFLLRRLKKE 983
Score = 92 (37.4 bits), Expect = 1.7e-07, Sum P(3) = 1.7e-07
Identities = 22/43 (51%), Positives = 29/43 (67%)
Query: 667 LLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 709
L ++Q L W+V ++L+ GILAD+ GLGKTI TIALI
Sbjct: 754 LKQYQIKGLEWLVSLYNNNLN---GILADEMGLGKTIQTIALI 793
Score = 60 (26.2 bits), Expect = 1.7e-07, Sum P(3) = 1.7e-07
Identities = 17/57 (29%), Positives = 25/57 (43%)
Query: 781 LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDP-CELAKFDVVITTYSIV 836
L++ P S L WA E S +S + R P KF+V++TTY +
Sbjct: 807 LIIVPLSTLSNWAYEFDKWAPSVVKVSYKGSPAARRAFVPQLRSGKFNVLLTTYEYI 863
>UNIPROTKB|Q8EGF3 [details] [associations]
symbol:SO_1651 "Helicase/SNF2 family domain protein"
species:211586 "Shewanella oneidensis MR-1" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR007527 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50966
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003677
GO:GO:0008270 EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
HOGENOM:HOG000294304 RefSeq:NP_717262.2 ProteinModelPortal:Q8EGF3
GeneID:1169445 KEGG:son:SO_1651 PATRIC:23522939 OMA:SSSHIEF
ProtClustDB:CLSK906361 Uniprot:Q8EGF3
Length = 1096
Score = 114 (45.2 bits), Expect = 1.8e-07, Sum P(3) = 1.8e-07
Identities = 28/82 (34%), Positives = 49/82 (59%)
Query: 760 GSSAKSFNFV-EQAKGRPAAG----TLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGS 814
G + ++ F+ +Q + + AAG +L++CPTS++ WA+E S L++ V HG+
Sbjct: 662 GKTIQTLAFLLKQKQLKSAAGPHLPSLIICPTSLVGNWAKEAAKFAPS---LTLAVIHGA 718
Query: 815 SRTKDPCELAKFDVVITTYSIV 836
R L++FDVV+TTY ++
Sbjct: 719 QRGPLLARLSEFDVVVTTYPLM 740
Score = 109 (43.4 bits), Expect = 1.8e-07, Sum P(3) = 1.8e-07
Identities = 30/96 (31%), Positives = 48/96 (50%)
Query: 910 VVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAVYKS 969
+VLDEAQ IKN + +V++ L++ + CL+GTP++N + +L S F
Sbjct: 755 IVLDEAQQIKNAQAKVSQMIKALQSPFKLCLTGTPLENHLGELKSLMDFCLPGLLGTTAY 814
Query: 970 FCSMIKVPISK-NPVKGYKKLQAVLKTIMLRRTKGE 1004
F + I + + K L + +LRRTK E
Sbjct: 815 FNKEFRNRIERYGDSEQVKVLSQRIAPFVLRRTKAE 850
Score = 100 (40.3 bits), Expect = 4.6e-06, Sum P(3) = 4.6e-06
Identities = 23/51 (45%), Positives = 32/51 (62%)
Query: 663 LAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKER 713
L L +Q+ L+W+ + L GGILADD GLGKTI T+A +LK++
Sbjct: 628 LQAELRPYQQQGLNWLCFLKEYQL---GGILADDMGLGKTIQTLAFLLKQK 675
Score = 37 (18.1 bits), Expect = 1.8e-07, Sum P(3) = 1.8e-07
Identities = 15/59 (25%), Positives = 22/59 (37%)
Query: 288 DPSSFNFQHLLSSEETATKPKDEEGEFTTEIACSSSGLVLNAQGGPGKGSMLKVPAIDY 346
DP + + L KD G F E+ G +GG KGS + + + Y
Sbjct: 122 DPRLNDVESLYDDRVLYILSKDNNGVFI-ELRRGKLG----KKGGYNKGSKIALSDVQY 175
>TIGR_CMR|SO_1651 [details] [associations]
symbol:SO_1651 "Snf2 family protein" species:211586
"Shewanella oneidensis MR-1" [GO:0008150 "biological_process"
evidence=ND] [GO:0003674 "molecular_function" evidence=ND]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR007527
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50966 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003677 GO:GO:0008270
EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
HOGENOM:HOG000294304 RefSeq:NP_717262.2 ProteinModelPortal:Q8EGF3
GeneID:1169445 KEGG:son:SO_1651 PATRIC:23522939 OMA:SSSHIEF
ProtClustDB:CLSK906361 Uniprot:Q8EGF3
Length = 1096
Score = 114 (45.2 bits), Expect = 1.8e-07, Sum P(3) = 1.8e-07
Identities = 28/82 (34%), Positives = 49/82 (59%)
Query: 760 GSSAKSFNFV-EQAKGRPAAG----TLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGS 814
G + ++ F+ +Q + + AAG +L++CPTS++ WA+E S L++ V HG+
Sbjct: 662 GKTIQTLAFLLKQKQLKSAAGPHLPSLIICPTSLVGNWAKEAAKFAPS---LTLAVIHGA 718
Query: 815 SRTKDPCELAKFDVVITTYSIV 836
R L++FDVV+TTY ++
Sbjct: 719 QRGPLLARLSEFDVVVTTYPLM 740
Score = 109 (43.4 bits), Expect = 1.8e-07, Sum P(3) = 1.8e-07
Identities = 30/96 (31%), Positives = 48/96 (50%)
Query: 910 VVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAVYKS 969
+VLDEAQ IKN + +V++ L++ + CL+GTP++N + +L S F
Sbjct: 755 IVLDEAQQIKNAQAKVSQMIKALQSPFKLCLTGTPLENHLGELKSLMDFCLPGLLGTTAY 814
Query: 970 FCSMIKVPISK-NPVKGYKKLQAVLKTIMLRRTKGE 1004
F + I + + K L + +LRRTK E
Sbjct: 815 FNKEFRNRIERYGDSEQVKVLSQRIAPFVLRRTKAE 850
Score = 100 (40.3 bits), Expect = 4.6e-06, Sum P(3) = 4.6e-06
Identities = 23/51 (45%), Positives = 32/51 (62%)
Query: 663 LAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKER 713
L L +Q+ L+W+ + L GGILADD GLGKTI T+A +LK++
Sbjct: 628 LQAELRPYQQQGLNWLCFLKEYQL---GGILADDMGLGKTIQTLAFLLKQK 675
Score = 37 (18.1 bits), Expect = 1.8e-07, Sum P(3) = 1.8e-07
Identities = 15/59 (25%), Positives = 22/59 (37%)
Query: 288 DPSSFNFQHLLSSEETATKPKDEEGEFTTEIACSSSGLVLNAQGGPGKGSMLKVPAIDY 346
DP + + L KD G F E+ G +GG KGS + + + Y
Sbjct: 122 DPRLNDVESLYDDRVLYILSKDNNGVFI-ELRRGKLG----KKGGYNKGSKIALSDVQY 175
>UNIPROTKB|F1SDB8 [details] [associations]
symbol:CHD1L "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0006974 "response to DNA damage stimulus" evidence=IEA]
[GO:0006338 "chromatin remodeling" evidence=IEA] [GO:0005886
"plasma membrane" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR002464
Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690 PROSITE:PS51194
SMART:SM00490 GO:GO:0005886 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0003677 GO:GO:0006974 GO:GO:0006338
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR002589
PROSITE:PS51154 GO:GO:0008026 OMA:TCQTIAL
GeneTree:ENSGT00670000098110 EMBL:CU462855
Ensembl:ENSSSCT00000007340 Uniprot:F1SDB8
Length = 905
Score = 114 (45.2 bits), Expect = 1.9e-07, Sum P(3) = 1.9e-07
Identities = 31/100 (31%), Positives = 51/100 (51%)
Query: 907 WFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAV 966
W +V+DEA +KN + + ++ R L+GTPIQN++ +LYS F+ D F+
Sbjct: 170 WSVLVVDEAHRLKNQNSLLHKSLSEFSVAFRLLLTGTPIQNSLQELYSLLSFVEPDLFSK 229
Query: 967 --YKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGE 1004
+ F + I K + +L +L+ +LRR K E
Sbjct: 230 EEVEDFVQRYE-DIEKES-ESASELYKLLQPFLLRRVKAE 267
Score = 73 (30.8 bits), Expect = 1.9e-07, Sum P(3) = 1.9e-07
Identities = 18/51 (35%), Positives = 27/51 (52%)
Query: 661 GVLAVPLLRHQRIALSWMVQKETSSLHCSGG-ILADDQGLGKTISTIALIL 710
G+ + L +Q ++W+ Q H G IL D+ GLGKT TIA+ +
Sbjct: 42 GLTGIHLRPYQLEGVNWLAQ----CFHYQNGCILGDEMGLGKTCQTIAVFI 88
Score = 70 (29.7 bits), Expect = 1.9e-07, Sum P(3) = 1.9e-07
Identities = 20/60 (33%), Positives = 30/60 (50%)
Query: 781 LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTK-----DPCELAKFDVVITTYSI 835
L++CP SVL W EE+ + G L + Y G + D + + F V++TTY I
Sbjct: 101 LILCPLSVLSNWKEEMER--CAPG-LCCVTYAGDKEERAHLQQDLKQESGFHVLLTTYEI 157
>TAIR|locus:2182978 [details] [associations]
symbol:CHR17 "chromatin remodeling factor17" species:3702
"Arabidopsis thaliana" [GO:0005634 "nucleus" evidence=ISM;IEA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=ISS]
[GO:0005829 "cytosol" evidence=RCA] [GO:0000226 "microtubule
cytoskeleton organization" evidence=RCA] [GO:0000911 "cytokinesis
by cell plate formation" evidence=RCA] [GO:0006259 "DNA metabolic
process" evidence=RCA] [GO:0006261 "DNA-dependent DNA replication"
evidence=RCA] [GO:0006306 "DNA methylation" evidence=RCA]
[GO:0006342 "chromatin silencing" evidence=RCA] [GO:0006346
"methylation-dependent chromatin silencing" evidence=RCA]
[GO:0007126 "meiosis" evidence=RCA] [GO:0008283 "cell
proliferation" evidence=RCA] [GO:0010413 "glucuronoxylan metabolic
process" evidence=RCA] [GO:0016246 "RNA interference" evidence=RCA]
[GO:0016572 "histone phosphorylation" evidence=RCA] [GO:0031047
"gene silencing by RNA" evidence=RCA] [GO:0033044 "regulation of
chromosome organization" evidence=RCA] [GO:0045492 "xylan
biosynthetic process" evidence=RCA] [GO:0051567 "histone H3-K9
methylation" evidence=RCA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0010228 "vegetative to reproductive phase
transition of meristem" evidence=IGI] InterPro:IPR000330
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR009057
InterPro:IPR015194 InterPro:IPR015195 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 PROSITE:PS51194 SMART:SM00490
SMART:SM00717 GO:GO:0005524 EMBL:CP002688 GO:GO:0003677
Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR017884
PROSITE:PS51293 GO:GO:0004386 GO:GO:0010228 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0016585 GO:GO:0031491
GO:GO:0043044 KO:K11654 OMA:MQRKWYK SUPFAM:SSF101224
IPI:IPI00547773 RefSeq:NP_850847.1 UniGene:At.19176
ProteinModelPortal:F4JY25 SMR:F4JY25 IntAct:F4JY25 PRIDE:F4JY25
EnsemblPlants:AT5G18620.2 GeneID:831980 KEGG:ath:AT5G18620
PhylomeDB:F4JY25 Uniprot:F4JY25
Length = 1072
Score = 124 (48.7 bits), Expect = 1.9e-07, Sum P(3) = 1.9e-07
Identities = 26/103 (25%), Positives = 54/103 (52%)
Query: 902 LAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRY 961
L + W +++DEA IKN + +++ R ++GTP+QN + +L++ FL
Sbjct: 311 LRRFSWRYIIIDEAHRIKNENSLLSKTMRLFSTNYRLLITGTPLQNNLHELWALLNFLLP 370
Query: 962 DPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGE 1004
+ F+ ++F ++ + + ++L VL+ +LRR K +
Sbjct: 371 EVFSSAETFDEWFQISGENDQQEVVQQLHKVLRPFLLRRLKSD 413
Score = 83 (34.3 bits), Expect = 1.9e-07, Sum P(3) = 1.9e-07
Identities = 18/43 (41%), Positives = 31/43 (72%)
Query: 668 LRHQRIA-LSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 709
LR ++A L+W+++ + ++ GILAD+ GLGKT+ TI+L+
Sbjct: 194 LRDYQLAGLNWLIRLYENGIN---GILADEMGLGKTLQTISLL 233
Score = 52 (23.4 bits), Expect = 1.9e-07, Sum P(3) = 1.9e-07
Identities = 16/61 (26%), Positives = 28/61 (45%)
Query: 781 LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSR-TKDPCELA-KFDVVITTYSIVSM 838
+VV P S L W E+R ++ L R ++ +A KFD+ +T++ +
Sbjct: 247 MVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIREELLVAGKFDICVTSFEMAIK 306
Query: 839 E 839
E
Sbjct: 307 E 307
>UNIPROTKB|Q2NKX8 [details] [associations]
symbol:ERCC6L "DNA excision repair protein ERCC-6-like"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0051301 "cell division" evidence=IEA]
[GO:0000777 "condensed chromosome kinetochore" evidence=IEA]
[GO:0000087 "M phase of mitotic cell cycle" evidence=TAS]
[GO:0000236 "mitotic prometaphase" evidence=TAS] [GO:0000278
"mitotic cell cycle" evidence=TAS] [GO:0005829 "cytosol"
evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR011990
InterPro:IPR013026 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50005
PROSITE:PS50293 PROSITE:PS51194 SMART:SM00490 GO:GO:0005829
GO:GO:0005524 Reactome:REACT_115566 Reactome:REACT_21300
GO:GO:0051301 GO:GO:0003677 Gene3D:1.25.40.10 GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0000236 GO:GO:0000777 CTD:54821 HOGENOM:HOG000074172
HOVERGEN:HBG107854 OMA:TKNGDLE EMBL:EU069463 EMBL:BC008808
EMBL:BC111486 EMBL:AK000112 EMBL:AK074719 EMBL:AY121802
IPI:IPI00552569 RefSeq:NP_060139.2 UniGene:Hs.47558
ProteinModelPortal:Q2NKX8 SMR:Q2NKX8 IntAct:Q2NKX8 STRING:Q2NKX8
PhosphoSite:Q2NKX8 DMDM:121948339 PaxDb:Q2NKX8 PeptideAtlas:Q2NKX8
PRIDE:Q2NKX8 DNASU:54821 Ensembl:ENST00000334463 GeneID:54821
KEGG:hsa:54821 UCSC:uc004eap.1 GeneCards:GC0XM071424
H-InvDB:HIX0016867 HGNC:HGNC:20794 HPA:HPA050492 MIM:300687
neXtProt:NX_Q2NKX8 PharmGKB:PA162385290 InParanoid:Q2NKX8
GenomeRNAi:54821 NextBio:57573 ArrayExpress:Q2NKX8 Bgee:Q2NKX8
CleanEx:HS_ERCC6L Genevestigator:Q2NKX8 Uniprot:Q2NKX8
Length = 1250
Score = 124 (48.7 bits), Expect = 2.0e-07, Sum P(3) = 2.0e-07
Identities = 40/112 (35%), Positives = 55/112 (49%)
Query: 907 WFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFL-RYDPFA 965
W V+LDEA IK T+ A + A R L+GTPIQN + +L+S F F +
Sbjct: 222 WDYVILDEAHKIKTSSTKSAICARAIPASNRLLLTGTPIQNNLQELWSLFDFACQGSLLG 281
Query: 966 VYKSFCSMIKVPISKNPVK---------GYK---KLQAVLKTIMLRRTKGED 1005
K+F + PI++ K G+K L A++K LRRTK ED
Sbjct: 282 TLKTFKMEYENPITRAREKDATPGEKALGFKISENLMAIIKPYFLRRTK-ED 332
Score = 77 (32.2 bits), Expect = 2.0e-07, Sum P(3) = 2.0e-07
Identities = 17/43 (39%), Positives = 24/43 (55%)
Query: 667 LLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 709
L HQ+ ++++ GGILADD GLGKT+ IA +
Sbjct: 96 LFEHQKEGIAFLYSLYRDGR--KGGILADDMGLGKTVQIIAFL 136
Score = 60 (26.2 bits), Expect = 2.0e-07, Sum P(3) = 2.0e-07
Identities = 17/60 (28%), Positives = 31/60 (51%)
Query: 781 LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCELAKFD----VVITTYSIV 836
L++ PT+++ W +E K T + V +HG S+ + L + V+ITTY ++
Sbjct: 149 LLIMPTNLINTWVKEFI-KWTP--GMRVKTFHGPSKDERTRNLNRIQQRNGVIITTYQML 205
>ZFIN|ZDB-GENE-030131-6320 [details] [associations]
symbol:chd8 "chromodomain helicase DNA binding
protein 8" species:7955 "Danio rerio" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0016817 "hydrolase activity, acting on acid anhydrides"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0071339 "MLL1 complex" evidence=ISS] [GO:0016055 "Wnt receptor
signaling pathway" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0016568 "chromatin modification"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271
Pfam:PF07533 PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 SMART:SM00717 Pfam:PF00385
ZFIN:ZDB-GENE-030131-6320 GO:GO:0005524 GO:GO:0006355 GO:GO:0016055
GO:GO:0003677 GO:GO:0006351 GO:GO:0003682 GO:GO:0016568
GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0071339
InterPro:IPR023780 PROSITE:PS00598 EMBL:AL928674 IPI:IPI00919855
UniGene:Dr.81397 PRIDE:B0R0I6 HOVERGEN:HBG107676 OrthoDB:EOG4ZPDTC
Uniprot:B0R0I6
Length = 2511
Score = 139 (54.0 bits), Expect = 2.0e-07, Sum P(3) = 2.0e-07
Identities = 35/104 (33%), Positives = 59/104 (56%)
Query: 902 LAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRY 961
L ++ W VV+DEA +KN ++ + L + + L+GTP+QN +++L+S FL
Sbjct: 973 LREISWRCVVIDEAHRLKNRNCKLLDSLKMLEIEHKVLLTGTPLQNTVEELFSLLHFL-- 1030
Query: 962 DPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGED 1005
+P A + S ++ + +KLQ++LK +MLRR K ED
Sbjct: 1031 EP-AQFPSEIEFLREFGDLKTEEQVQKLQSILKPMMLRRLK-ED 1072
Score = 72 (30.4 bits), Expect = 2.0e-07, Sum P(3) = 2.0e-07
Identities = 17/43 (39%), Positives = 27/43 (62%)
Query: 667 LLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 709
L +Q ++W++ + +C ILAD+ GLGKTI +IAL+
Sbjct: 847 LREYQLEGVNWLLFNWYNRQNC---ILADEMGLGKTIQSIALL 886
Score = 59 (25.8 bits), Expect = 2.0e-07, Sum P(3) = 2.0e-07
Identities = 18/78 (23%), Positives = 34/78 (43%)
Query: 781 LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDP-------CE---------LA 824
+++ P S + W E N ++ +VYHGS ++ C+
Sbjct: 899 MIIAPLSTITNWEREFSNWT----DMNAIVYHGSLASRQMIQQYEMYCKDDKGHLIPGAY 954
Query: 825 KFDVVITTYSIVSMEVPK 842
KFD +ITT+ ++ + P+
Sbjct: 955 KFDALITTFEMILSDCPE 972
>UNIPROTKB|J9P3F5 [details] [associations]
symbol:ERCC6L "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR011990 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003677 Gene3D:1.25.40.10
GO:GO:0004386 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
CTD:54821 GeneTree:ENSGT00590000083118 OMA:TKNGDLE
EMBL:AAEX03026496 RefSeq:XP_549075.2 Ensembl:ENSCAFT00000036577
GeneID:491955 KEGG:cfa:491955 Uniprot:J9P3F5
Length = 1268
Score = 121 (47.7 bits), Expect = 2.1e-07, Sum P(3) = 2.1e-07
Identities = 39/111 (35%), Positives = 54/111 (48%)
Query: 907 WFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFL-RYDPFA 965
W V+LDEA IK T+ A + A+ R L+GTPIQN + +L+S F F +
Sbjct: 244 WDYVILDEAHKIKTSSTKSAICARAVPARNRILLTGTPIQNNLQELWSLFDFACQGSLLG 303
Query: 966 VYKSFCSMIKVPI----SKNPVKGYK--------KLQAVLKTIMLRRTKGE 1004
K+F + PI K+ G K L A++K+ LRRTK E
Sbjct: 304 TLKTFKIEYENPIMRAREKDATPGEKALGLKISENLMAIIKSHFLRRTKEE 354
Score = 76 (31.8 bits), Expect = 2.1e-07, Sum P(3) = 2.1e-07
Identities = 17/43 (39%), Positives = 24/43 (55%)
Query: 667 LLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 709
L HQ+ ++++ GGILADD GLGKT+ IA +
Sbjct: 118 LFEHQKEGVAFLYSLYRDGR--KGGILADDMGLGKTVQIIAFL 158
Score = 64 (27.6 bits), Expect = 2.1e-07, Sum P(3) = 2.1e-07
Identities = 17/60 (28%), Positives = 31/60 (51%)
Query: 781 LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCELAKFD----VVITTYSIV 836
L++ PT+++ W +E V + V +HGSS+ + L + V+ITTY ++
Sbjct: 171 LLIMPTNLISTWIKEF---VKWTPGMRVKTFHGSSKDERTRNLNRIQQRNGVIITTYQML 227
>UNIPROTKB|B5DE69 [details] [associations]
symbol:chd8 "Chromodomain-helicase-DNA-binding protein 8"
species:8364 "Xenopus (Silurana) tropicalis" [GO:0005634 "nucleus"
evidence=ISS] [GO:0071339 "MLL1 complex" evidence=ISS]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271 Pfam:PF07533
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298
SMART:SM00490 SMART:SM00592 Pfam:PF00385 GO:GO:0005524
GO:GO:0006355 GO:GO:0016055 GO:GO:0003677 GO:GO:0006351
GO:GO:0016568 GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0071339
InterPro:IPR023780 PROSITE:PS00598 HOVERGEN:HBG107676 CTD:57680
KO:K04494 EMBL:BC168549 RefSeq:NP_001131089.2 UniGene:Str.42730
GeneID:100192376 KEGG:xtr:100192376 Xenbase:XB-GENE-966847
Uniprot:B5DE69
Length = 2184
Score = 136 (52.9 bits), Expect = 2.7e-07, Sum P(3) = 2.7e-07
Identities = 34/104 (32%), Positives = 57/104 (54%)
Query: 902 LAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRY 961
L ++ W V++DEA +KN ++ + + + + L+GTP+QN +++L+S FL
Sbjct: 881 LREIEWRCVIIDEAHRLKNRNCKLLDSLKHMDLEHKVLLTGTPLQNTVEELFSLLHFLEP 940
Query: 962 DPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGED 1005
F+ F ++ V+ KLQA+LK +MLRR K ED
Sbjct: 941 TQFSSEAEFLKDFGDLKTEEQVQ---KLQAILKPMMLRRLK-ED 980
Score = 67 (28.6 bits), Expect = 2.7e-07, Sum P(3) = 2.7e-07
Identities = 25/100 (25%), Positives = 44/100 (44%)
Query: 760 GSSAKSFNFVEQAKGRPAAGT-LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTK 818
G + +S F+++ G LV+ P S + W E S ++ +VYHGS ++
Sbjct: 785 GKTIQSITFLQEVYNVGIRGPFLVIAPLSTITNWEREFG----SWTQMNTIVYHGSLASR 840
Query: 819 DP-------CELAK---------FDVVITTYSIVSMEVPK 842
C+ +K FD +ITT+ +V + P+
Sbjct: 841 QMIQQYEMYCKDSKGRLIPGAYKFDALITTFEMVLSDCPE 880
Score = 64 (27.6 bits), Expect = 2.7e-07, Sum P(3) = 2.7e-07
Identities = 15/43 (34%), Positives = 25/43 (58%)
Query: 667 LLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 709
L +Q ++W++ + +C ILAD+ GLGKTI +I +
Sbjct: 755 LREYQLEGVNWLLFNWYNRQNC---ILADEMGLGKTIQSITFL 794
Score = 39 (18.8 bits), Expect = 8.1e-05, Sum P(3) = 8.1e-05
Identities = 12/49 (24%), Positives = 22/49 (44%)
Query: 689 SGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDN 737
SG + + +G TI+ I ++R PS D + ++ED+
Sbjct: 465 SGSLRSRSKGKPSTITPIVGKKRKRNPSSDNSDAEIMASQASPAEDEDS 513
>ASPGD|ASPL0000068126 [details] [associations]
symbol:cshA species:162425 "Emericella nidulans"
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IEA] [GO:0006283 "transcription-coupled
nucleotide-excision repair" evidence=IEA] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003677 EMBL:BN001304
GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 EMBL:AACD01000119 HOGENOM:HOG000170952 KO:K10841
OrthoDB:EOG44TSGZ RefSeq:XP_664707.1 ProteinModelPortal:Q5AX77
STRING:Q5AX77 EnsemblFungi:CADANIAT00000362 GeneID:2869817
KEGG:ani:AN7103.2 OMA:HSALEHD Uniprot:Q5AX77
Length = 1193
Score = 113 (44.8 bits), Expect = 3.5e-07, Sum P(4) = 3.5e-07
Identities = 30/96 (31%), Positives = 42/96 (43%)
Query: 895 LDIVAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYS 954
L A L V W +LDE I+N T + LR R LSGTP+QN + +L+S
Sbjct: 536 LQSYASLLIPVEWGGTILDEGHKIRNPNTSITMHAKELRTPHRIILSGTPMQNNLTELWS 595
Query: 955 YFRFLRYDPFAVYKSFCSMIKVPISKNPVKGYKKLQ 990
F F+ +F + + PI + LQ
Sbjct: 596 LFDFVFPMRLGTLVNFRNQFEFPIRQGGYANASNLQ 631
Score = 79 (32.9 bits), Expect = 3.5e-07, Sum P(4) = 3.5e-07
Identities = 18/45 (40%), Positives = 26/45 (57%)
Query: 666 PLL-RHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 709
PLL +Q+ + WM + + GGI+ D+ GLGKTI IA +
Sbjct: 396 PLLFDYQKTGVQWMWELHQQQV---GGIIGDEMGLGKTIQAIAFL 437
Score = 61 (26.5 bits), Expect = 3.5e-07, Sum P(4) = 3.5e-07
Identities = 16/54 (29%), Positives = 28/54 (51%)
Query: 781 LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCELAKFDVVIT-TY 833
+VVCP +V++QW E ++ +S+L GS E ++ D ++ TY
Sbjct: 451 IVVCPATVMKQWVNEF-HRWWPPFRVSILHTSGSGMVNIKSESSREDALMYGTY 503
Score = 49 (22.3 bits), Expect = 3.5e-07, Sum P(4) = 3.5e-07
Identities = 30/136 (22%), Positives = 56/136 (41%)
Query: 438 PFKDSGQ-SFIGLSPSLLSQNQVVHAKEEHEDL-ILESKRARFCQEICDGSSSRSPIDGR 495
PF G S G SL Q+ ++ A++E ++L LE +AR + + R
Sbjct: 165 PFSRMGTGSSAGPLASL--QDALIDAEDERDELEALEQVKAR--SAVSHRNLVRPSFGFD 220
Query: 496 HLSLNLNGSRQYFPYAQPSTLNKKELDGVKEDMEAEIKTRSMASHLLKLSPESIQSNSSD 555
S + Q + +P +++L+ + + +KT + LS + D
Sbjct: 221 ETSESTAAEEQ--AHERPG--KRRKLEKSTQSSKVSVKTEDTDLGMETLSDGPASEDQDD 276
Query: 556 CKSHVDDEPDICILED 571
S+++D P+ ED
Sbjct: 277 SASYIED-PEQEFSED 291
>UNIPROTKB|E1BS47 [details] [associations]
symbol:CHD7 "Chromodomain-helicase-DNA-binding protein 7"
species:9031 "Gallus gallus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001005
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013
PROSITE:PS51194 SMART:SM00298 SMART:SM00490 SMART:SM00717
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0003677
GO:GO:0003682 GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
GeneTree:ENSGT00560000077077 EMBL:AADN02022009 EMBL:AADN02022010
IPI:IPI00598234 Ensembl:ENSGALT00000005903 ArrayExpress:E1BS47
Uniprot:E1BS47
Length = 1326
Score = 135 (52.6 bits), Expect = 3.8e-07, Sum P(2) = 3.8e-07
Identities = 35/104 (33%), Positives = 55/104 (52%)
Query: 902 LAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRY 961
L + W VV+DEA +KN ++ + + + L+GTP+QN +++L+S FL
Sbjct: 280 LRNIPWRCVVIDEAHRLKNRNCKLLEGLKMMDLEHKVLLTGTPLQNTVEELFSLLHFLEP 339
Query: 962 DPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGED 1005
F +F ++ V+ KLQA+LK +MLRR K ED
Sbjct: 340 GRFPSETTFMQEFGDLKTEEQVQ---KLQAILKPMMLRRLK-ED 379
Score = 76 (31.8 bits), Expect = 3.8e-07, Sum P(2) = 3.8e-07
Identities = 40/152 (26%), Positives = 63/152 (41%)
Query: 712 ERPPSFR-TEDDNKRQLETLNLDEEDNGIQVNGLDLVKQESDYCRVVPN---GSSAKSFN 767
ERPP+ + ++ R+ + N E VN L + C + G + +S
Sbjct: 132 ERPPADDWKKSESSREYKNNNKLREYQLEGVNWLLFNWYNTRNCILADEMGLGKTIQSIT 191
Query: 768 FVEQAKGRPAAGT-LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSS---RT------ 817
F+ + + G LV+ P S + W E R L+V+VYHGS RT
Sbjct: 192 FLYEIYLKGIHGPFLVIAPLSTIPNWEREFRTWT----ELNVVVYHGSQASRRTIQLYEM 247
Query: 818 --KDPCELA-----KFDVVITTYSIVSMEVPK 842
KDP KF +ITT+ ++ + P+
Sbjct: 248 YFKDPQGRVIKGSYKFHAIITTFEMILTDCPE 279
Score = 66 (28.3 bits), Expect = 4.0e-06, Sum P(2) = 4.0e-06
Identities = 15/43 (34%), Positives = 26/43 (60%)
Query: 667 LLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 709
L +Q ++W++ ++ +C ILAD+ GLGKTI +I +
Sbjct: 154 LREYQLEGVNWLLFNWYNTRNC---ILADEMGLGKTIQSITFL 193
>RGD|1302988 [details] [associations]
symbol:Smarca2 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily a, member 2"
species:10116 "Rattus norvegicus" [GO:0000790 "nuclear chromatin"
evidence=ISO] [GO:0001105 "RNA polymerase II transcription
coactivator activity" evidence=ISO] [GO:0005634 "nucleus"
evidence=ISO] [GO:0008285 "negative regulation of cell
proliferation" evidence=ISO] [GO:0016514 "SWI/SNF complex"
evidence=ISO] [GO:0030308 "negative regulation of cell growth"
evidence=ISO] [GO:0035887 "aortic smooth muscle cell
differentiation" evidence=ISO] [GO:0043231 "intracellular
membrane-bounded organelle" evidence=ISO] [GO:0044212
"transcription regulatory region DNA binding" evidence=ISO]
[GO:0045111 "intermediate filament cytoskeleton" evidence=ISO]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=ISO] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=ISO] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=ISO]
[GO:0071564 "npBAF complex" evidence=ISO] [GO:0071565 "nBAF
complex" evidence=ISO] [GO:0071778 "WINAC complex" evidence=ISO]
[GO:0005730 "nucleolus" evidence=ISO] InterPro:IPR000330
InterPro:IPR001487 InterPro:IPR001650 InterPro:IPR006576
InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503 PROSITE:PS50014
PROSITE:PS51194 SMART:SM00297 SMART:SM00490 SMART:SM00592
SMART:SM00951 RGD:1302988 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0003677 GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 KO:K11647 InterPro:IPR013999
InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529 SMART:SM00573
PROSITE:PS51204 CTD:6595 HOGENOM:HOG000172363 HOVERGEN:HBG056636
OrthoDB:EOG418BMJ IPI:IPI00464435 EMBL:AY643746
RefSeq:NP_001004446.1 UniGene:Rn.94939 ProteinModelPortal:Q6DUH4
SMR:Q6DUH4 STRING:Q6DUH4 GeneID:361745 KEGG:rno:361745
UCSC:RGD:1302988 InParanoid:Q6DUH4 NextBio:677480
Genevestigator:Q6DUH4 Uniprot:Q6DUH4
Length = 1597
Score = 113 (44.8 bits), Expect = 3.8e-07, Sum P(4) = 3.8e-07
Identities = 35/116 (30%), Positives = 55/116 (47%)
Query: 902 LAKVGWFRVVLDEAQSIKNHR---TQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRF 958
LAK+ W +++DE +KNH TQV + A RR L+GTP+QN + +L++ F
Sbjct: 847 LAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYV--APRRILLTGTPLQNKLPELWALLNF 904
Query: 959 LRYDPFAVYKSFCSMIKVPIS----------KNPVKGYKKLQAVLKTIMLRRTKGE 1004
L F +F P + + + ++L VL+ +LRR K E
Sbjct: 905 LLPTIFKSCSTFEQWFNAPFAMTGERVDLNEEETILIIRRLHKVLRPFLLRRLKKE 960
Score = 91 (37.1 bits), Expect = 3.8e-07, Sum P(4) = 3.8e-07
Identities = 22/43 (51%), Positives = 29/43 (67%)
Query: 668 LRHQRI-ALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 709
L+H ++ L WMV ++L+ GILAD+ G GKTI TIALI
Sbjct: 731 LKHYQLQGLEWMVSLYNNNLN---GILADEMGPGKTIQTIALI 770
Score = 54 (24.1 bits), Expect = 3.8e-07, Sum P(4) = 3.8e-07
Identities = 15/57 (26%), Positives = 23/57 (40%)
Query: 781 LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDP-CELAKFDVVITTYSIV 836
L++ P S L W E S +S R+ P KF+ ++TTY +
Sbjct: 784 LIIVPLSTLSNWTYEFDKWAPSAVKISYKGTPAMRRSLVPQLRSGKFNALLTTYEYI 840
Score = 49 (22.3 bits), Expect = 3.8e-07, Sum P(4) = 3.8e-07
Identities = 18/75 (24%), Positives = 32/75 (42%)
Query: 508 FPYAQPSTLNKKELDGVKEDMEAEIKTRSMASHLLKLSPESIQSNSSDCKSHVDD-EPDI 566
+ A S + E D +ED E E +R + L P S + + D + ++ + D+
Sbjct: 634 YEVAPRSDSEESESDYEEEDEEEE-SSRQETEEKILLDPNSKEVSEKDARQIIETAKQDV 692
Query: 567 CILEDISQPARSNQS 581
+ AR +QS
Sbjct: 693 DDEYSMQYSARGSQS 707
>RGD|1306794 [details] [associations]
symbol:Chd1 "chromodomain helicase DNA binding protein 1"
species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006338 "chromatin remodeling" evidence=ISO]
[GO:0035064 "methylated histone residue binding" evidence=ISO]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 RGD:1306794 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0006338 GO:GO:0004386
InterPro:IPR016197 SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR023780 InterPro:IPR023779
PROSITE:PS00598 GeneTree:ENSGT00560000076896 OrthoDB:EOG4PG601
IPI:IPI00767719 Ensembl:ENSRNOT00000019358 UCSC:RGD:1306794
Uniprot:D4AAG9
Length = 904
Score = 117 (46.2 bits), Expect = 3.9e-07, Sum P(4) = 3.9e-07
Identities = 27/101 (26%), Positives = 51/101 (50%)
Query: 902 LAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRY 961
L + W + +DEA +KN + + + ++ R ++GTP+QN++ +L+S F+
Sbjct: 601 LGGLNWAFIGVDEAHRLKNDDSLLYKTLIDFKSNHRLLITGTPLQNSLKELWSLLHFIMP 660
Query: 962 DPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTK 1002
+ F+ ++ F + K GY L L+ +LRR K
Sbjct: 661 EKFSSWEDF----EEEHGKGREYGYASLHKELEPFLLRRVK 697
Score = 76 (31.8 bits), Expect = 3.9e-07, Sum P(4) = 3.9e-07
Identities = 57/230 (24%), Positives = 89/230 (38%)
Query: 488 SRSPIDGRHLSLNLNGSRQYFPYAQPSTLNKKELDGVKEDMEAEIKTRSMASHLLKLSPE 547
S+ P D ++L S + + TL ++ + G+K+ + K + L SPE
Sbjct: 308 SKEPGDVQYLIKWKGWSHIHNTWETEETLKQQNVRGMKKLDNYKKKDQETKRWLKNASPE 367
Query: 548 SIQSNSSDCKSHVDDE--PDICILEDISQPARSNQSLVLG------KTLSMNRSACSNHS 599
++ + C+ + D+ I+E I A SNQ G K + S CS
Sbjct: 368 DVEYYN--CQQELTDDLHKQYQIVERII--AHSNQKSAAGLPDYYCKWQGLPYSECSWED 423
Query: 600 VALGKPVVTSQHSSYSDYPGYPGVPLTGLGGMKSKASDERLILQVAMQGISQPNAEASAP 659
AL + Y P +K + R VA++ QP S
Sbjct: 424 GALISKKFQTCIDEYFSRNQSKTTPFKDCKVLKQRP---RF---VALK--KQP----SYI 471
Query: 660 DGVLAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 709
G + L +Q L+W+ C ILAD+ GLGKTI TI+ +
Sbjct: 472 GGHEGLELRDYQLNGLNWLAHSWCKGNSC---ILADEMGLGKTIQTISFL 518
Score = 57 (25.1 bits), Expect = 3.9e-07, Sum P(4) = 3.9e-07
Identities = 18/66 (27%), Positives = 33/66 (50%)
Query: 781 LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKD---------P-CELAKFDVVI 830
L+V P S L W E++ T ++ +VY G +++ P + KF++++
Sbjct: 532 LLVVPLSTLTSWQREIQ---TWASQMNAVVYLGDINSRNMIRTHEWMHPQTKRLKFNILL 588
Query: 831 TTYSIV 836
TTY I+
Sbjct: 589 TTYEIL 594
Score = 46 (21.3 bits), Expect = 3.9e-07, Sum P(4) = 3.9e-07
Identities = 19/69 (27%), Positives = 31/69 (44%)
Query: 96 SGAESGGLGDSSSQLEPTEQKCSPLQTCSASFSDWFNQNSGTCCPESVGI-SQFETPGCS 154
+ + SG DSSS E ++ S ++ + DW Q SG+ P G S+ E
Sbjct: 115 ASSNSGSEEDSSSS-EDSDASSSDVKRKKHNDEDW--QMSGSGSPSQSGSDSESEDERDK 171
Query: 155 TASSFSEGD 163
++ +E D
Sbjct: 172 SSCDGTESD 180
Score = 42 (19.8 bits), Expect = 9.5e-07, Sum P(4) = 9.5e-07
Identities = 18/55 (32%), Positives = 25/55 (45%)
Query: 96 SGAESGGLGD-SSSQLEPTEQKC-SPLQTCSASFSDWFNQNSGTCCPESVGISQF 148
SG+ SG D SSSQ ++ S + S S SD +N P V ++F
Sbjct: 32 SGSSSGSSSDGSSSQSGSSDSDSGSDSGSQSESESDTSRENKVQAKPPKVDGAEF 86
Score = 38 (18.4 bits), Expect = 2.3e-06, Sum P(4) = 2.3e-06
Identities = 10/39 (25%), Positives = 17/39 (43%)
Query: 190 VGSHIDSRSVDASPSSITENFDERYGHYGASIGNRLGSS 228
+ H D SV +++ D+ G+ G+ GSS
Sbjct: 1 MNGHSDEESVRNGSGESSQSEDDSGSASGSGSGSSSGSS 39
>POMBASE|SPAC11E3.01c [details] [associations]
symbol:swr1 "SNF2 family helicase Swr1" species:4896
"Schizosaccharomyces pombe" [GO:0000812 "Swr1 complex"
evidence=IDA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0004003
"ATP-dependent DNA helicase activity" evidence=ISM] [GO:0005524
"ATP binding" evidence=ISM] [GO:0005634 "nucleus" evidence=IDA]
[GO:0006338 "chromatin remodeling" evidence=IPI] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0043486 "histone exchange" evidence=ISO] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690
PROSITE:PS51194 SMART:SM00490 PomBase:SPAC11E3.01c GO:GO:0005524
EMBL:CU329670 GO:GO:0006355 GenomeReviews:CU329670_GR GO:GO:0003677
GO:GO:0006351 GO:GO:0000812 GO:GO:0004003 GO:GO:0043486
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR014012 PROSITE:PS51204 KO:K11681 HOGENOM:HOG000186095
OrthoDB:EOG49S9FK PIR:T37528 RefSeq:XP_001713118.1
ProteinModelPortal:O13682 STRING:O13682 EnsemblFungi:SPAC11E3.01c.1
GeneID:3361561 KEGG:spo:SPAC11E3.01c OMA:VKNEREG NextBio:20811602
Uniprot:O13682
Length = 1288
Score = 111 (44.1 bits), Expect = 4.0e-07, Sum P(5) = 4.0e-07
Identities = 23/59 (38%), Positives = 36/59 (61%)
Query: 901 PLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFL 959
P + W ++LDEA +IKN R+Q ++ A+ R L+GTP+QN + +L+S FL
Sbjct: 563 PFRRKKWQYMILDEAHNIKNFRSQRWQSLLNFNAEHRLLLTGTPLQNNLVELWSLLYFL 621
Score = 99 (39.9 bits), Expect = 4.0e-07, Sum P(5) = 4.0e-07
Identities = 30/90 (33%), Positives = 45/90 (50%)
Query: 632 KSKASDERLILQVAMQGISQ------PNAEASAPDGVLAVPLL------RHQRIALSWMV 679
K + +D+ L + ++ GIS+ PN + VP L +Q+ L W+
Sbjct: 400 KRRVNDDGLARKKSIAGISEQRKFDEPNGSPVLHANKIQVPFLFRGTLREYQQYGLEWLT 459
Query: 680 QKETSSLHCSGGILADDQGLGKTISTIALI 709
S+ + GILAD+ GLGKTI TIAL+
Sbjct: 460 ALHDSN---TNGILADEMGLGKTIQTIALL 486
Score = 55 (24.4 bits), Expect = 4.0e-07, Sum P(5) = 4.0e-07
Identities = 18/61 (29%), Positives = 29/61 (47%)
Query: 781 LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGS--SRTKDPCELAKFD---VVITTYSI 835
L++ PTSV+ W E + + +L Y+G+ R + K D V IT+Y +
Sbjct: 500 LIIVPTSVMLNWEMEFKKFLPG---FKILTYYGNPQERKEKRSGWYKPDTWHVCITSYQL 556
Query: 836 V 836
V
Sbjct: 557 V 557
Score = 40 (19.1 bits), Expect = 4.0e-07, Sum P(5) = 4.0e-07
Identities = 8/24 (33%), Positives = 12/24 (50%)
Query: 383 TYSHSHSSRTKQMVFAKDEGNDDL 406
TY S ++ + K EG+ DL
Sbjct: 2 TYEESEKNKNGLSSYIKKEGSSDL 25
Score = 39 (18.8 bits), Expect = 4.0e-07, Sum P(5) = 4.0e-07
Identities = 9/17 (52%), Positives = 11/17 (64%)
Query: 988 KLQAVLKTIMLRRTKGE 1004
KL VL+ +LRR K E
Sbjct: 667 KLHRVLRPYLLRRLKTE 683
>SGD|S000006003 [details] [associations]
symbol:MOT1 "Essential protein involved in regulation of
transcription" species:4932 "Saccharomyces cerevisiae" [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0005739
"mitochondrion" evidence=IEA;IDA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0017025 "TBP-class protein binding"
evidence=IPI] [GO:0000228 "nuclear chromosome" evidence=IDA]
[GO:0016887 "ATPase activity" evidence=IDA] [GO:0006357 "regulation
of transcription from RNA polymerase II promoter" evidence=IDA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA;IDA] [GO:0045898 "regulation of RNA
polymerase II transcriptional preinitiation complex assembly"
evidence=IMP] [GO:0042790 "transcription of nuclear large rRNA
transcript from RNA polymerase I promoter" evidence=IMP;IDA]
[GO:0006364 "rRNA processing" evidence=IMP] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR016024 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 SGD:S000006003 GO:GO:0005739 GO:GO:0005524
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
PROSITE:PS50077 GO:GO:0003677 GO:GO:0016887 EMBL:BK006949
GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 EMBL:U41849 GO:GO:0000228 GO:GO:0006364
HOGENOM:HOG000210415 KO:K15192 OMA:TKQEGAI InterPro:IPR022707
Pfam:PF12054 GO:GO:0042790 GO:GO:0045898 OrthoDB:EOG44XNQZ
EMBL:M83224 PIR:S22775 RefSeq:NP_015243.1 ProteinModelPortal:P32333
SMR:P32333 DIP:DIP-2418N IntAct:P32333 MINT:MINT-623118
STRING:P32333 PaxDb:P32333 PeptideAtlas:P32333 PRIDE:P32333
EnsemblFungi:YPL082C GeneID:856023 KEGG:sce:YPL082C CYGD:YPL082c
GeneTree:ENSGT00630000089754 NextBio:980935 Genevestigator:P32333
GermOnline:YPL082C Uniprot:P32333
Length = 1867
Score = 122 (48.0 bits), Expect = 4.2e-07, Sum P(2) = 4.2e-07
Identities = 43/118 (36%), Positives = 57/118 (48%)
Query: 902 LAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRY 961
L K + VLDE IKN ++++A+A + A R L+GTPIQN + +L+S F FL
Sbjct: 1397 LNKTEYNYCVLDEGHIIKNSQSKLAKAVKEITANHRLILTGTPIQNNVLELWSLFDFLMP 1456
Query: 962 DPFAVYKSFCSMIKVPI---------SKNPVKGYKKLQAVLKTI---MLRRTKGEDCL 1007
K F PI SK G L+A+ K + MLRR K ED L
Sbjct: 1457 GFLGTEKMFQERFAKPIAASRNSKTSSKEQEAGVLALEALHKQVLPFMLRRLK-EDVL 1513
Score = 92 (37.4 bits), Expect = 4.2e-07, Sum P(2) = 4.2e-07
Identities = 24/64 (37%), Positives = 36/64 (56%)
Query: 667 LLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNK-R 725
L ++Q+ ++W+ LH GIL DD GLGKT+ TI +I ++ R ED K R
Sbjct: 1272 LRKYQQDGVNWLAFLNKYHLH---GILCDDMGLGKTLQTICIIASDQ--YLRKEDYEKTR 1326
Query: 726 QLET 729
+E+
Sbjct: 1327 SVES 1330
Score = 71 (30.1 bits), Expect = 5.9e-05, Sum P(2) = 5.9e-05
Identities = 25/103 (24%), Positives = 44/103 (42%)
Query: 737 NGIQVNGLDLVKQESDYCRVVPNGSSAKS-FNFVEQAKGRPAAGTLVVCPTSVLRQWAEE 795
+GI + + L K C + + K + + R A +L++CP S+ W E
Sbjct: 1292 HGILCDDMGLGKTLQTICIIASDQYLRKEDYEKTRSVESR-ALPSLIICPPSLTGHWENE 1350
Query: 796 LRNKVTSKGSLSVLVYHGSSR---TKDPCELAKFDVVITTYSI 835
L V+VY G T P +L+ D+++T+Y +
Sbjct: 1351 FDQYAPF---LKVVVYAGGPTVRLTLRP-QLSDADIIVTSYDV 1389
>CGD|CAL0003962 [details] [associations]
symbol:orf19.239 species:5476 "Candida albicans" [GO:0016586
"RSC complex" evidence=IEA] [GO:0007059 "chromosome segregation"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0031055 "chromatin remodeling at
centromere" evidence=IEA] [GO:0006337 "nucleosome disassembly"
evidence=IEA] [GO:0016584 "nucleosome positioning" evidence=IEA]
[GO:0006302 "double-strand break repair" evidence=IEA] [GO:0006368
"transcription elongation from RNA polymerase II promoter"
evidence=IEA] [GO:0007126 "meiosis" evidence=IEA] [GO:0007010
"cytoskeleton organization" evidence=IEA] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=IEA] [GO:0000086
"G2/M transition of mitotic cell cycle" evidence=IEA] [GO:0015616
"DNA translocase activity" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0070577 "histone acetyl-lysine binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 CGD:CAL0003962 GO:GO:0005524 GO:GO:0003677
GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370
EMBL:AACQ01000027 EMBL:AACQ01000026 InterPro:IPR014012
PROSITE:PS51204 KO:K11786 RefSeq:XP_719938.1 RefSeq:XP_720068.1
ProteinModelPortal:Q5AEM9 STRING:Q5AEM9 GeneID:3638290
GeneID:3638351 KEGG:cal:CaO19.239 KEGG:cal:CaO19.7869
Uniprot:Q5AEM9
Length = 1303
Score = 100 (40.3 bits), Expect = 4.7e-07, Sum P(4) = 4.7e-07
Identities = 25/100 (25%), Positives = 50/100 (50%)
Query: 902 LAKVGWFRVVLDEAQSIKNHRTQVARACWGL-RAKRRWCLSGTPIQNAIDDLYSYFRFLR 960
LAK + +++DE +KN ++++++ + K R L+GTP+QN + +L++ F+
Sbjct: 616 LAKFHYSHMIIDEGHRMKNAQSKLSQTLRTYYKTKNRLILTGTPLQNNLPELWALLNFVL 675
Query: 961 YDPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRR 1000
F KSF P + + +L +++RR
Sbjct: 676 PGIFNSVKSFDDWFNTPFANTGAQEKIELTEEESLLVIRR 715
Score = 88 (36.0 bits), Expect = 4.7e-07, Sum P(4) = 4.7e-07
Identities = 29/91 (31%), Positives = 46/91 (50%)
Query: 619 GYPGVPLTGLGGMKSKASDERLILQVAMQGISQPNAEASAPDGVLAVPLLRHQRIALSWM 678
G P V + K++ ++ +VA + I + E P ++ L +Q L WM
Sbjct: 456 GSPEVAVENKSDDKAELREKTDYYEVAHR-IKEKITEQ--PTILVGGKLKEYQMKGLEWM 512
Query: 679 VQKETSSLHCSGGILADDQGLGKTISTIALI 709
V + L+ GILAD+ GLGKTI +I+L+
Sbjct: 513 VSLYNNHLN---GILADEMGLGKTIQSISLV 540
Score = 74 (31.1 bits), Expect = 4.7e-07, Sum P(4) = 4.7e-07
Identities = 21/65 (32%), Positives = 29/65 (44%)
Query: 781 LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSS---RTKDP-CELAKFDVVITTYSIV 836
L++ P S + W E S + V+VY GS R+ P F V++TTY V
Sbjct: 553 LIIVPLSTITNWTLEFEKWAPS---IKVIVYKGSQQQRRSLQPDIRYGNFQVLLTTYEYV 609
Query: 837 SMEVP 841
E P
Sbjct: 610 IRERP 614
Score = 41 (19.5 bits), Expect = 4.7e-07, Sum P(4) = 4.7e-07
Identities = 48/213 (22%), Positives = 91/213 (42%)
Query: 358 NGLPIY-GNSLSNITLGDGKRSAQPCTYSHSHSSRTKQMVFAKDEGNDDLFPCWSTVSDS 416
NG I GN +T + QP + + + S + K+E N+ L + + DS
Sbjct: 2 NGSAIANGNGSVGVTPALSQVQLQPGSANLTTQSNDSVVPKNKEELNELLSKYYKLLFDS 61
Query: 417 VEPIDEAVGRNSSYHDGCNSFPFKD-SGQSFIGLSPSL--LSQNQVVHAKEEHE---DLI 470
+ + ++ +G F+D + Q+ + + L +S+ + K+E E +L
Sbjct: 62 -NKLKKEFEKSEDKSEG----KFEDVNAQAKLDIESVLAQVSKEHEEYIKDESEFMQELF 116
Query: 471 LESKRARFCQEICDGSSSRSPIDGRHL-SLNLNGSRQYFP-YAQPSTLNKKELDGVKEDM 528
E+ + E D + G L S + + ++ + S KK+ D V E +
Sbjct: 117 SENLKGTIKSEGFDNELFEKQVAGLLLLSRDYDLPEKFQKEFTTISDQTKKD-DLVNEIL 175
Query: 529 E--AEIKT--RSMASHL-LKL-SPESIQSNSSD 555
E E++T + A +L +K+ SP S S+ +D
Sbjct: 176 EKLTELETDFETRAQNLGIKVPSPSSSSSSKTD 208
Score = 37 (18.1 bits), Expect = 1.1e-06, Sum P(4) = 1.1e-06
Identities = 14/71 (19%), Positives = 26/71 (36%)
Query: 23 QGLSIDMDTLLGILEEEKQPDRVKSSPGDLSLRNLSQDELVQDVGSHSNLQLQSGFKGDM 82
Q L I + + + D + S G + + +++ Q + NL G GD
Sbjct: 190 QNLGIKVPSPSSSSSSKTDKDTLHSPLGTIHAEKIISNKISQRLKELENLPANIGTFGDT 249
Query: 83 RDIATYPLYGL 93
I + + L
Sbjct: 250 DGIDKFKIQAL 260
>FB|FBgn0011604 [details] [associations]
symbol:Iswi "Imitation SWI" species:7227 "Drosophila
melanogaster" [GO:0006338 "chromatin remodeling"
evidence=ISS;NAS;TAS] [GO:0016589 "NURF complex"
evidence=NAS;IDA;TAS] [GO:0005524 "ATP binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=IDA] [GO:0008094 "DNA-dependent
ATPase activity" evidence=IGI;IDA] [GO:0000166 "nucleotide binding"
evidence=TAS] [GO:0016584 "nucleosome positioning" evidence=IDA]
[GO:0006334 "nucleosome assembly" evidence=IDA] [GO:0016590 "ACF
complex" evidence=NAS;IDA;TAS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IMP;IDA] [GO:0008623 "CHRAC"
evidence=NAS;IDA;TAS] [GO:0006333 "chromatin assembly or
disassembly" evidence=IDA;TAS] [GO:0042766 "nucleosome
mobilization" evidence=IDA;TAS] [GO:0016887 "ATPase activity"
evidence=NAS] [GO:0035060 "brahma complex" evidence=IDA]
[GO:0003678 "DNA helicase activity" evidence=TAS] [GO:0005515
"protein binding" evidence=IPI] [GO:0006351 "transcription,
DNA-dependent" evidence=IDA] [GO:0005667 "transcription factor
complex" evidence=IPI] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=TAS] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0031491 "nucleosome binding" evidence=IEA]
[GO:0008134 "transcription factor binding" evidence=IPI]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IMP] [GO:0035076 "ecdysone
receptor-mediated signaling pathway" evidence=IGI] [GO:0007517
"muscle organ development" evidence=IMP] [GO:0048813 "dendrite
morphogenesis" evidence=IMP] [GO:0042752 "regulation of circadian
rhythm" evidence=IMP] [GO:0006325 "chromatin organization"
evidence=IMP] [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=IMP] [GO:0031213 "RSF complex"
evidence=IPI] [GO:0005700 "polytene chromosome" evidence=IDA]
[GO:0070615 "nucleosome-dependent ATPase activity" evidence=IDA]
[GO:0035063 "nuclear speck organization" evidence=IMP]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF09110
Pfam:PF09111 Pfam:PF13892 PROSITE:PS00690 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 EMBL:AE013599 GO:GO:0005524
GO:GO:0045892 GO:GO:0003677 GO:GO:0045944 GO:GO:0006351
GO:GO:0042752 Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0005667
GO:GO:0048813 GO:GO:0007517 InterPro:IPR017884 PROSITE:PS51293
GO:GO:0005700 GO:GO:0035076 GO:GO:0042766 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0003678
GO:GO:0031491 GO:GO:0043044 GO:GO:0016584 GO:GO:0006334
GO:GO:0016589 GO:GO:0016590 GO:GO:0008623 GO:GO:0008094
ChiTaRS:SMARCA1 GeneTree:ENSGT00680000100002 KO:K11654
SUPFAM:SSF101224 EMBL:L27127 EMBL:AY094908 EMBL:BT044562 PIR:A56533
RefSeq:NP_523719.1 RefSeq:NP_725203.1 RefSeq:NP_725204.1
UniGene:Dm.2581 PDB:1OFC PDBsum:1OFC ProteinModelPortal:Q24368
SMR:Q24368 DIP:DIP-24067N IntAct:Q24368 MINT:MINT-252539
STRING:Q24368 PaxDb:Q24368 PRIDE:Q24368 EnsemblMetazoa:FBtr0087841
EnsemblMetazoa:FBtr0087842 EnsemblMetazoa:FBtr0087843 GeneID:36390
KEGG:dme:Dmel_CG8625 CTD:36390 FlyBase:FBgn0011604
InParanoid:Q24368 OMA:EDYCHWR OrthoDB:EOG4M0CGK PhylomeDB:Q24368
EvolutionaryTrace:Q24368 GenomeRNAi:36390 NextBio:798287
Bgee:Q24368 GermOnline:CG8625 GO:GO:0031213 GO:GO:0070615
GO:GO:0035063 Uniprot:Q24368
Length = 1027
Score = 131 (51.2 bits), Expect = 6.1e-07, Sum P(3) = 6.1e-07
Identities = 31/101 (30%), Positives = 49/101 (48%)
Query: 904 KVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDP 963
K W +V+DEA IKN +++++ + R ++GTP+QN + +L++ FL D
Sbjct: 247 KFNWRYLVIDEAHRIKNEKSKLSEILREFKTANRLLITGTPLQNNLHELWALLNFLLPDV 306
Query: 964 FAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGE 1004
F + F +L AVLK +LRR K E
Sbjct: 307 FNSSEDFDEWFNTNTCLGDDALITRLHAVLKPFLLRRLKAE 347
Score = 81 (33.6 bits), Expect = 6.1e-07, Sum P(3) = 6.1e-07
Identities = 17/40 (42%), Positives = 27/40 (67%)
Query: 670 HQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 709
+Q L+WM+ + ++ GILAD+ GLGKT+ TI+L+
Sbjct: 131 YQIRGLNWMISLYENGIN---GILADEMGLGKTLQTISLL 167
Score = 60 (26.2 bits), Expect = 7.4e-05, Sum P(3) = 7.4e-05
Identities = 29/150 (19%), Positives = 67/150 (44%)
Query: 695 DDQGLGKTISTIALILKERPPSF-RTEDDNKRQLETLN--LDEEDNGIQVNGLDLVKQES 751
D++ L + +T + + P++ ++ + Q+ LN + +NGI NG+ + E
Sbjct: 100 DEELLAEDSATKEIFRFDASPAYIKSGEMRDYQIRGLNWMISLYENGI--NGI--LADEM 155
Query: 752 DYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVY 811
+ + + +++ K + A +V+ P S L+ W E + S ++ ++
Sbjct: 156 GLGKTL---QTISLLGYLKHFKNQ-AGPHIVIVPKSTLQNWVNEFKKWCPSLRAVCLIGD 211
Query: 812 HGSSRT--KDPCELAKFDVVITTYSIVSME 839
+ T +D ++DV +T+Y + E
Sbjct: 212 QDTRNTFIRDVLMPGEWDVCVTSYEMCIRE 241
Score = 41 (19.5 bits), Expect = 6.1e-07, Sum P(3) = 6.1e-07
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 298 LSSEETATKPKDEEG--EFTTEIACSSSG 324
+S +TA EE E T++ A SSSG
Sbjct: 1 MSKTDTAAVEATEENSNETTSDAATSSSG 29
>ZFIN|ZDB-GENE-030605-1 [details] [associations]
symbol:smarca4 "SWI/SNF related, matrix associated,
actin dependent regulator of chromatin, subfamily a, member 4"
species:7955 "Danio rerio" [GO:0016817 "hydrolase activity, acting
on acid anhydrides" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0016818 "hydrolase activity, acting on acid anhydrides, in
phosphorus-containing anhydrides" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0031101 "fin regeneration" evidence=IMP] [GO:0003407 "neural
retina development" evidence=IMP] [GO:0007417 "central nervous
system development" evidence=IMP] [GO:0014032 "neural crest cell
development" evidence=IMP] [GO:0060059 "embryonic retina
morphogenesis in camera-type eye" evidence=IMP] [GO:0010842 "retina
layer formation" evidence=IMP] [GO:0021634 "optic nerve formation"
evidence=IMP] [GO:0030182 "neuron differentiation" evidence=IMP]
[GO:0060973 "cell migration involved in heart development"
evidence=IMP] [GO:0001947 "heart looping" evidence=IMP] [GO:0060038
"cardiac muscle cell proliferation" evidence=IMP] [GO:0048596
"embryonic camera-type eye morphogenesis" evidence=IMP] [GO:0000185
"activation of MAPKKK activity" evidence=IMP] InterPro:IPR000330
InterPro:IPR001487 InterPro:IPR001650 InterPro:IPR006576
InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503 PROSITE:PS50014
PROSITE:PS51194 SMART:SM00297 SMART:SM00490 SMART:SM00592
SMART:SM00951 ZFIN:ZDB-GENE-030605-1 GO:GO:0005524 GO:GO:0005634
GO:GO:0006355 GO:GO:0030182 GO:GO:0003677 GO:GO:0007417
GO:GO:0004386 GO:GO:0001947 GO:GO:0010842 GO:GO:0014032
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
Gene3D:1.20.920.10 SUPFAM:SSF47370 PROSITE:PS00633
InterPro:IPR018359 GO:GO:0031101 GO:GO:0060038 GO:GO:0048596
KO:K11647 GeneTree:ENSGT00550000074659 InterPro:IPR013999
InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529 SMART:SM00573
PROSITE:PS51204 GO:GO:0060059 GO:GO:0000185 HOGENOM:HOG000172363
HOVERGEN:HBG056636 CTD:6597 OMA:HKPMESM EMBL:BX322663 EMBL:BC163918
EMBL:BC163920 EMBL:AY205256 EMBL:AY218841 IPI:IPI00493397
RefSeq:NP_853634.1 UniGene:Dr.2414 SMR:Q7ZSY3 STRING:Q7ZSY3
Ensembl:ENSDART00000115110 Ensembl:ENSDART00000134514 GeneID:353295
KEGG:dre:353295 InParanoid:Q7ZSY3 NextBio:20812727 GO:GO:0060973
GO:GO:0021634 Uniprot:Q7ZSY3
Length = 1627
Score = 112 (44.5 bits), Expect = 6.4e-07, Sum P(3) = 6.4e-07
Identities = 36/116 (31%), Positives = 54/116 (46%)
Query: 902 LAKVGWFRVVLDEAQSIKNHR---TQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRF 958
LAK+ W +++DE +KNH TQV + A RR L+GTP+QN + +L++ F
Sbjct: 882 LAKLRWKYMIVDEGHRMKNHHCKLTQVLNTHY--LAPRRVLLTGTPLQNKLPELWALLNF 939
Query: 959 LRYDPFAVYKSFCSMIKVPISKNPVKG----------YKKLQAVLKTIMLRRTKGE 1004
L F +F P + K ++L VL+ +LRR K E
Sbjct: 940 LLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEETILIIRRLHKVLRPFLLRRLKKE 995
Score = 92 (37.4 bits), Expect = 6.4e-07, Sum P(3) = 6.4e-07
Identities = 22/43 (51%), Positives = 29/43 (67%)
Query: 667 LLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 709
L ++Q L W+V ++L+ GILAD+ GLGKTI TIALI
Sbjct: 766 LKQYQIKGLEWLVSLYNNNLN---GILADEMGLGKTIQTIALI 805
Score = 56 (24.8 bits), Expect = 6.4e-07, Sum P(3) = 6.4e-07
Identities = 16/57 (28%), Positives = 24/57 (42%)
Query: 781 LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPC-ELAKFDVVITTYSIV 836
L++ P S L W E S +S + R P KF+V++TTY +
Sbjct: 819 LIIVPLSTLSNWVYEFDKWAPSVVKVSYKGSPAARRAFLPILRSGKFNVLVTTYEYI 875
>FB|FBgn0086613 [details] [associations]
symbol:Ino80 "Ino80" species:7227 "Drosophila melanogaster"
[GO:0004386 "helicase activity" evidence=ISS] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0031011 "Ino80 complex" evidence=IDA] [GO:0005700 "polytene
chromosome" evidence=IDA] [GO:0000975 "regulatory region DNA
binding" evidence=IDA] [GO:0010468 "regulation of gene expression"
evidence=IMP] [GO:0000790 "nuclear chromatin" evidence=IDA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF13892 PROSITE:PS51194
PROSITE:PS51413 SMART:SM00490 EMBL:AE014297 GO:GO:0005524
GO:GO:0006355 GO:GO:0006281 GO:GO:0006351 GO:GO:0016887
GO:GO:0006338 GO:GO:0031011 GO:GO:0006310 GO:GO:0005700
GO:GO:0010468 HSSP:Q97XQ5 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0003678 GO:GO:0000975 KO:K11665
EMBL:AY069786 RefSeq:NP_732413.1 UniGene:Dm.33518
ProteinModelPortal:Q9VDY1 SMR:Q9VDY1 IntAct:Q9VDY1 STRING:Q9VDY1
PaxDb:Q9VDY1 EnsemblMetazoa:FBtr0083771 GeneID:42314
KEGG:dme:Dmel_CG31212 UCSC:CG31212-RA CTD:54617 FlyBase:FBgn0086613
GeneTree:ENSGT00680000100052 InParanoid:Q9VDY1 OMA:NTMAEVR
OrthoDB:EOG4SQVBH PhylomeDB:Q9VDY1 ChiTaRS:INO80 GenomeRNAi:42314
NextBio:828189 Bgee:Q9VDY1 Uniprot:Q9VDY1
Length = 1638
Score = 128 (50.1 bits), Expect = 7.3e-07, Sum P(3) = 7.3e-07
Identities = 35/106 (33%), Positives = 54/106 (50%)
Query: 904 KVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDP 963
++ W +VLDEAQ+IK+ +Q + G + R LSGTPIQN++ +L++ F+
Sbjct: 660 RIKWQYMVLDEAQAIKSAASQRWKLLLGFSCRNRLLLSGTPIQNSMAELWALLHFIMPTL 719
Query: 964 FAVYKSFCSMIKVPI---SKNPV----KGYKKLQAVLKTIMLRRTK 1002
F + F I ++N K +L +LK MLRR K
Sbjct: 720 FDSHDEFNEWFSKDIESHAENKTGIDEKQISRLHMILKPFMLRRIK 765
Score = 74 (31.1 bits), Expect = 7.3e-07, Sum P(3) = 7.3e-07
Identities = 23/81 (28%), Positives = 39/81 (48%)
Query: 632 KSKASDERLILQVAMQGIS-QPNAEAS-APDGVLAVPLLRHQRI-ALSWMVQKETSSLHC 688
K K +E Q +++ I +P E P + L+ +I ++W+ +
Sbjct: 497 KKKEKEEEEQAQESVEDIKPEPRPEMKDLPQPKMFKGTLKGYQIKGMTWLANIYDQGI-- 554
Query: 689 SGGILADDQGLGKTISTIALI 709
GILAD+ GLGKT+ +IA +
Sbjct: 555 -SGILADEMGLGKTVQSIAFL 574
Score = 57 (25.1 bits), Expect = 7.3e-07, Sum P(3) = 7.3e-07
Identities = 22/67 (32%), Positives = 29/67 (43%)
Query: 781 LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTK-------DPCEL----AKFDVV 829
LV+ P S L W +E+ V V+ Y GS + D L A F VV
Sbjct: 588 LVISPASTLHNWQQEMSRFVPD---FKVVPYWGSPAERKILRQFWDQKHLHTRDASFHVV 644
Query: 830 ITTYSIV 836
IT+Y +V
Sbjct: 645 ITSYQLV 651
>UNIPROTKB|H0YJG4 [details] [associations]
symbol:CHD8 "Chromodomain-helicase-DNA-binding protein 8"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:AL135744 EMBL:AL161747
HGNC:HGNC:20153 Ensembl:ENST00000555935 Uniprot:H0YJG4
Length = 873
Score = 136 (52.9 bits), Expect = 7.4e-07, Sum P(2) = 7.4e-07
Identities = 34/104 (32%), Positives = 56/104 (53%)
Query: 902 LAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRY 961
L ++ W V++DEA +KN ++ + + + + L+GTP+QN +++L+S FL
Sbjct: 163 LREIEWRCVIIDEAHRLKNRNCKLLDSLKHMDLEHKVLLTGTPLQNTVEELFSLLHFLEP 222
Query: 962 DPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGED 1005
F F ++ V+ KLQA+LK +MLRR K ED
Sbjct: 223 SQFPSESEFLKDFGDLKTEEQVQ---KLQAILKPMMLRRLK-ED 262
Score = 68 (29.0 bits), Expect = 7.4e-07, Sum P(2) = 7.4e-07
Identities = 16/43 (37%), Positives = 26/43 (60%)
Query: 667 LLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 709
L +Q ++W++ + +C ILAD+ GLGKTI +IA +
Sbjct: 37 LREYQLEGVNWLLFNWYNRQNC---ILADEMGLGKTIQSIAFL 76
Score = 67 (28.6 bits), Expect = 9.4e-07, Sum P(2) = 9.4e-07
Identities = 34/140 (24%), Positives = 59/140 (42%)
Query: 720 EDDNKRQLETLNLDEEDNGIQVNGLDLVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAG 779
E N+ QL L E N + N + +Q + G + +S F+++ G
Sbjct: 30 EYKNRNQLREYQL-EGVNWLLFNWYN--RQNCILADEMGLGKTIQSIAFLQEVYNVGIHG 86
Query: 780 T-LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDP-------CELA------- 824
LV+ P S + W E N T ++ +VYHGS ++ C+ +
Sbjct: 87 PFLVIAPLSTITNWEREF-NTWTE---MNTIVYHGSLASRQMIQQYEMYCKDSRGRLIPG 142
Query: 825 --KFDVVITTYSIVSMEVPK 842
KFD +ITT+ ++ + P+
Sbjct: 143 AYKFDALITTFEMILSDCPE 162
>WB|WBGene00016868 [details] [associations]
symbol:C52B9.8 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003677 GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
KO:K11647 GeneTree:ENSGT00550000074659 InterPro:IPR013999
InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529 SMART:SM00573
PROSITE:PS51204 EMBL:FO080644 PIR:T28937 RefSeq:NP_508736.1
ProteinModelPortal:Q22944 SMR:Q22944 STRING:Q22944 PaxDb:Q22944
EnsemblMetazoa:C52B9.8 GeneID:180705 KEGG:cel:CELE_C52B9.8
UCSC:C52B9.8 CTD:180705 WormBase:C52B9.8 InParanoid:Q22944
NextBio:910548 Uniprot:Q22944
Length = 1336
Score = 103 (41.3 bits), Expect = 7.8e-07, Sum P(4) = 7.8e-07
Identities = 29/114 (25%), Positives = 52/114 (45%)
Query: 902 LAKVGWFRVVLDEAQSIKNHRTQVARAC-WGLRAKRRWCLSGTPIQNAIDDLYSYFRFLR 960
L K+ W +++DE +KN ++ + +RR ++GTP+QN + +L++ FL
Sbjct: 482 LGKLRWKYMIIDEGHRLKNQHCKLTEMLNTRFQCQRRLLITGTPLQNKLPELWALLNFLL 541
Query: 961 YDPFAVYKSFCSMIKVPISKNPVKG----------YKKLQAVLKTIMLRRTKGE 1004
F+ +F P + K ++L VL+ +LRR K E
Sbjct: 542 PSIFSSCSTFEQWFNAPFATTGEKVELTQEETMLIIRRLHKVLRPFLLRRLKKE 595
Score = 88 (36.0 bits), Expect = 7.8e-07, Sum P(4) = 7.8e-07
Identities = 22/46 (47%), Positives = 29/46 (63%)
Query: 664 AVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 709
++ L +Q L WMV ++L+ GILAD+ GLGKTI TIA I
Sbjct: 363 SLKLKPYQIKGLEWMVSLFNNNLN---GILADEMGLGKTIQTIAFI 405
Score = 62 (26.9 bits), Expect = 7.8e-07, Sum P(4) = 7.8e-07
Identities = 18/63 (28%), Positives = 33/63 (52%)
Query: 781 LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTK---DPC-ELAKFDVVITTYSIV 836
LV+ P S + W E +K + ++ ++ Y G T+ +P + KF+V++TT+ V
Sbjct: 419 LVIVPLSTVPNWQNEF-DKWAA--NVHLIAYKGPKETRKVFEPIIKSGKFNVLLTTFEYV 475
Query: 837 SME 839
E
Sbjct: 476 IRE 478
Score = 48 (22.0 bits), Expect = 7.8e-07, Sum P(4) = 7.8e-07
Identities = 15/72 (20%), Positives = 35/72 (48%)
Query: 418 EPIDEAV-GRNSSYHDG----CNSFPFKDSGQSFIGLSPSLLSQNQVVHAKEE---HEDL 469
EP+DE V R + Y D N++P +F+ + ++ + + +H +++ + ++
Sbjct: 46 EPVDETVEDRAARYDDYMQVLANAYPLNTWDSNFMKIDDDII-RKEALHYRDQDMKNREM 104
Query: 470 ILESKRARFCQE 481
L+ F +E
Sbjct: 105 YLKENLHTFPEE 116
>ZFIN|ZDB-GENE-050419-256 [details] [associations]
symbol:chd2 "chromodomain helicase DNA binding
protein 2" species:7955 "Danio rerio" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 ZFIN:ZDB-GENE-050419-256
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0004386
InterPro:IPR016197 SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR023780 InterPro:IPR023779
PROSITE:PS00598 InterPro:IPR025260 Pfam:PF13907
GeneTree:ENSGT00560000076896 EMBL:BX649578 IPI:IPI00999128
Ensembl:ENSDART00000127730 ArrayExpress:E7F7R2 Bgee:E7F7R2
Uniprot:E7F7R2
Length = 1813
Score = 139 (54.0 bits), Expect = 7.9e-07, Sum P(4) = 7.9e-07
Identities = 32/103 (31%), Positives = 53/103 (51%)
Query: 900 GPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFL 959
G L + W + +DEA +KN + + + R+ R ++GTP+QN++ +L+S FL
Sbjct: 609 GVLGNINWAFLGVDEAHRLKNDDSLLYKTLIDFRSNHRLLITGTPLQNSLKELWSLLHFL 668
Query: 960 RYDPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTK 1002
D F ++ F + K GY+ L VL+ +LRR K
Sbjct: 669 MSDKFESWEDF----EDEHGKGRDNGYQSLHKVLEPFLLRRVK 707
Score = 73 (30.8 bits), Expect = 7.9e-07, Sum P(4) = 7.9e-07
Identities = 16/40 (40%), Positives = 24/40 (60%)
Query: 670 HQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 709
+Q ++W+ S C+ ILAD+ GLGKTI TI+ +
Sbjct: 492 YQLDGVNWLAH---SWCRCNSVILADEMGLGKTIQTISFL 528
Score = 54 (24.1 bits), Expect = 7.9e-07, Sum P(4) = 7.9e-07
Identities = 22/66 (33%), Positives = 33/66 (50%)
Query: 781 LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHG---SSRT-KD-----P-CELAKFDVVI 830
+VV P S L W E T ++V+VY G S +T +D P + KF+ ++
Sbjct: 542 IVVVPLSTLTSWQREFD---TWAPDMNVVVYLGDVTSRKTIRDYEWINPQTKRIKFNALL 598
Query: 831 TTYSIV 836
TTY I+
Sbjct: 599 TTYEIL 604
Score = 39 (18.8 bits), Expect = 7.9e-07, Sum P(4) = 7.9e-07
Identities = 10/21 (47%), Positives = 12/21 (57%)
Query: 46 KSSPGDLSLRNLSQDELVQDV 66
K+SP DL N Q EL D+
Sbjct: 363 KASPEDLEYYNCQQ-ELTNDL 382
Score = 39 (18.8 bits), Expect = 2.5e-06, Sum P(5) = 2.5e-06
Identities = 11/33 (33%), Positives = 16/33 (48%)
Query: 96 SGAESGGLGDSSSQLEPTEQKCSPLQTCSASFS 128
SG+ESG +S E + + S + S S S
Sbjct: 31 SGSESGSQSESEQGSEKAQSRHSESNSTSDSES 63
Score = 37 (18.1 bits), Expect = 2.5e-06, Sum P(5) = 2.5e-06
Identities = 13/46 (28%), Positives = 22/46 (47%)
Query: 538 ASHLLKLSPESIQSNSSDCKSHVDDEPDICILEDIS----QPARSN 579
+S +K P + N +D K ++ PD+ + S +PAR N
Sbjct: 79 SSAQVKDKPVRKKDNLADVKKMWEEHPDVYGVRRSSRSRQEPARLN 124
>UNIPROTKB|I3LQZ8 [details] [associations]
symbol:CHD2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 GeneTree:ENSGT00560000076896
EMBL:CT954235 EMBL:CU466964 Ensembl:ENSSSCT00000025402
Uniprot:I3LQZ8
Length = 1709
Score = 128 (50.1 bits), Expect = 8.6e-07, Sum P(4) = 8.6e-07
Identities = 28/101 (27%), Positives = 52/101 (51%)
Query: 902 LAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRY 961
L + W + +DEA +KN + + + ++ R ++GTP+QN++ +L+S F+
Sbjct: 595 LGSINWAFLGVDEAHRLKNDDSLLYKTLIDFKSNHRLLITGTPLQNSLKELWSLLHFIMP 654
Query: 962 DPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTK 1002
+ F ++ F + K GY+ L VL+ +LRR K
Sbjct: 655 EKFEFWEDF----EEDHGKGRENGYQSLHKVLEPFLLRRVK 691
Score = 88 (36.0 bits), Expect = 8.6e-07, Sum P(4) = 8.6e-07
Identities = 52/201 (25%), Positives = 85/201 (42%)
Query: 515 TLNKKELDGVKEDMEAEIKTRSMASHLLKLSPESIQSNSSDCKSHVDDE--PDICILEDI 572
+L ++++ G+K+ + K + L K+SPE ++ +C+ + E I+E +
Sbjct: 330 SLQQQKVKGLKKLENFKKKEDEIKQWLGKVSPEDVEY--FNCQQELASELNKQYQIVERV 387
Query: 573 ---SQPARSNQSLVLGKTLSMNRSACSNHSVAL-GKPVVTSQHSSYSDYPGYPGVPLTGL 628
+PA SN+ L K + + S CS AL GK S S+ +P
Sbjct: 388 IGNRKPAPSNEPEYLCKWMGLPYSECSWEDEALIGKKF-QSCIDSFHSRNNSKTIPTREC 446
Query: 629 GGMKSKASDERLILQVAMQGISQPNAEASAPDGVLAVPLLRHQRIALSWMVQKETSSLHC 688
+K + L Q A G N E L +Q L+W+ +
Sbjct: 447 KALKQRPRFVALKKQPAYLG--GENLE-----------LRDYQLEGLNWLAHSWCN--RS 491
Query: 689 SGGILADDQGLGKTISTIALI 709
+ ILAD+ GLGKTI TI+ +
Sbjct: 492 NSVILADEMGLGKTIQTISFL 512
Score = 51 (23.0 bits), Expect = 8.6e-07, Sum P(4) = 8.6e-07
Identities = 18/66 (27%), Positives = 32/66 (48%)
Query: 781 LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPC----------ELAKFDVVI 830
L+V P S L W E ++ + ++V+VY G +++ + KF+ +I
Sbjct: 526 LIVVPLSTLTSWQREF--EIWAP-EINVVVYIGDLMSRNTIREYEWIHSQTKRLKFNALI 582
Query: 831 TTYSIV 836
TTY I+
Sbjct: 583 TTYEIL 588
Score = 37 (18.1 bits), Expect = 8.6e-07, Sum P(4) = 8.6e-07
Identities = 8/21 (38%), Positives = 11/21 (52%)
Query: 288 DPSSFNFQHLLSSEETATKPK 308
+PS FN + SS + PK
Sbjct: 122 EPSRFNIKEEASSGSESGSPK 142
>TAIR|locus:2041644 [details] [associations]
symbol:CHR5 "chromatin remodeling 5" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA;ISS]
[GO:0003682 "chromatin binding" evidence=ISS] [GO:0004386 "helicase
activity" evidence=IEA;ISS] [GO:0005524 "ATP binding"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM;IEA]
[GO:0006333 "chromatin assembly or disassembly" evidence=ISS]
[GO:0009506 "plasmodesma" evidence=IDA] InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0009506 GO:GO:0005524 GO:GO:0005634
EMBL:CP002685 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR025260 Pfam:PF13907 KO:K11367
IPI:IPI00521189 RefSeq:NP_178970.3 UniGene:At.40665 PRIDE:F4IV99
EnsemblPlants:AT2G13370.1 GeneID:815823 KEGG:ath:AT2G13370
OMA:ARNTKSY Uniprot:F4IV99
Length = 1724
Score = 115 (45.5 bits), Expect = 9.4e-07, Sum P(3) = 9.4e-07
Identities = 29/99 (29%), Positives = 49/99 (49%)
Query: 902 LAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRY 961
L+K+ W +++DEA +KN Q+ A K + ++GTP+QN++++L++ FL
Sbjct: 749 LSKIKWIYLMVDEAHRLKNSEAQLYTALLEFSTKNKLLITGTPLQNSVEELWALLHFLDP 808
Query: 962 DPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRR 1000
F F K S N + L L+ +LRR
Sbjct: 809 GKFKNKDEFVENYKNLSSFNESE-LANLHLELRPHILRR 846
Score = 77 (32.2 bits), Expect = 9.4e-07, Sum P(3) = 9.4e-07
Identities = 23/87 (26%), Positives = 41/87 (47%)
Query: 762 SAKSFNFVEQAKGRPAAGTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPC 821
S F++ + P LVV P S L WA+E R + ++++VY G+ +++ C
Sbjct: 660 SVSMLGFLQNTQQIPGP-FLVVVPLSTLANWAKEFRKWLPG---MNIIVYVGTRASREVC 715
Query: 822 EL------------AKFDVVITTYSIV 836
+ KF+ ++TTY +V
Sbjct: 716 QQYEFYNEKKVGRPIKFNALLTTYEVV 742
Score = 67 (28.6 bits), Expect = 9.4e-07, Sum P(3) = 9.4e-07
Identities = 20/77 (25%), Positives = 41/77 (53%)
Query: 633 SKASDERLILQVAMQGISQPNAEASAPDGVLAVPLLRHQRIALSWMVQKETSSLHCSGGI 692
S A +++ Q +G + P+ ++ L +Q L+++V S L+ + I
Sbjct: 591 SIAVQGKMVEQQRTKGKASLRKLDEQPEWLIGGTLRDYQLEGLNFLVN---SWLNDTNVI 647
Query: 693 LADDQGLGKTISTIALI 709
LAD+ GLGKT+ +++++
Sbjct: 648 LADEMGLGKTVQSVSML 664
Score = 49 (22.3 bits), Expect = 5.7e-05, Sum P(3) = 5.7e-05
Identities = 21/80 (26%), Positives = 39/80 (48%)
Query: 681 KETSSLHCSGGILADDQGLG---KTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDN 737
K S LHC L+D Q L K ++ + +E +RT ++ ++E ++ +E +
Sbjct: 469 KGQSHLHCQWKTLSDLQNLSGFKKVLNYTKKVTEEI--RYRTAL-SREEIEVNDVSKEMD 525
Query: 738 GIQVNGLDLVKQESDYCRVV 757
LD++KQ S R++
Sbjct: 526 ------LDIIKQNSQVERII 539
>ASPGD|ASPL0000041040 [details] [associations]
symbol:AN9077 species:162425 "Emericella nidulans"
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0006338 "chromatin remodeling" evidence=IEA] [GO:0000812 "Swr1
complex" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR002464 Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0006355 GO:GO:0003677 EMBL:BN001306 GO:GO:0006351
GO:GO:0016568 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529
PROSITE:PS51204 GO:GO:0008026 EMBL:AACD01000169 KO:K11681
RefSeq:XP_682346.1 STRING:Q5ARK3 GeneID:2868023 KEGG:ani:AN9077.2
HOGENOM:HOG000186095 OMA:YGNQEER OrthoDB:EOG49S9FK Uniprot:Q5ARK3
Length = 1698
Score = 114 (45.2 bits), Expect = 9.5e-07, Sum P(4) = 9.5e-07
Identities = 24/58 (41%), Positives = 36/58 (62%)
Query: 902 LAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFL 959
L + W ++LDEA +IKN R+Q +A R + R L+GTP+QN + +L+S FL
Sbjct: 942 LKRRSWHYMILDEAHNIKNFRSQRWQALLTFRTRARLLLTGTPLQNNLTELWSLLFFL 999
Score = 93 (37.8 bits), Expect = 9.5e-07, Sum P(4) = 9.5e-07
Identities = 32/100 (32%), Positives = 46/100 (46%)
Query: 611 HSSYSDYPGYPGVPLTGLGGMKSKASDERLILQVAMQGISQ-PNAEASAPDGVLAVPLLR 669
HS + PG T +S +S E + A S P + P +L L
Sbjct: 769 HSRAASSEASPGTVATKPSEPESVSSIEAPAEKHAQPSESPGPGLKTPIPH-LLRGTLRE 827
Query: 670 HQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 709
+Q L W+ ++ ++ GILAD+ GLGKTI TIAL+
Sbjct: 828 YQHFGLDWLAGLYSNHIN---GILADEMGLGKTIQTIALL 864
Score = 59 (25.8 bits), Expect = 9.5e-07, Sum P(4) = 9.5e-07
Identities = 19/61 (31%), Positives = 29/61 (47%)
Query: 781 LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCELAKFD-----VVITTYSI 835
LVV PTSV+ W E+ K G ++ Y+G+ + D V+IT+Y +
Sbjct: 878 LVVVPTSVILNW--EMEFKKWCPG-FKIMTYYGNQEERRQKRRGWMDDNSWNVLITSYQL 934
Query: 836 V 836
V
Sbjct: 935 V 935
Score = 38 (18.4 bits), Expect = 9.5e-07, Sum P(4) = 9.5e-07
Identities = 8/17 (47%), Positives = 11/17 (64%)
Query: 988 KLQAVLKTIMLRRTKGE 1004
KL VL+ +LRR K +
Sbjct: 1047 KLHTVLRPYILRRLKAD 1063
>SGD|S000002742 [details] [associations]
symbol:SWR1 "Swi2/Snf2-related ATPase structural component of
the SWR1 complex" species:4932 "Saccharomyces cerevisiae"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0000812 "Swr1 complex"
evidence=IDA] [GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0016568 "chromatin modification" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0006338 "chromatin
remodeling" evidence=IGI;IMP;IDA] [GO:0005198 "structural molecule
activity" evidence=IMP] [GO:0043486 "histone exchange"
evidence=IMP] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490
SGD:S000002742 GO:GO:0005524 GO:GO:0006355 GO:GO:0003677
GO:GO:0005198 EMBL:BK006938 GO:GO:0006351 GO:GO:0000812
GO:GO:0004386 GO:GO:0043486 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 PROSITE:PS51204 GeneTree:ENSGT00530000063427
EMBL:U51032 KO:K11681 HOGENOM:HOG000186095 OrthoDB:EOG49S9FK
PIR:S70099 RefSeq:NP_010621.1 ProteinModelPortal:Q05471 SMR:Q05471
DIP:DIP-2845N IntAct:Q05471 MINT:MINT-1165514 STRING:Q05471
PaxDb:Q05471 EnsemblFungi:YDR334W GeneID:851934 KEGG:sce:YDR334W
CYGD:YDR334w OMA:APGFKVL NextBio:970001 Genevestigator:Q05471
GermOnline:YDR334W Uniprot:Q05471
Length = 1514
Score = 107 (42.7 bits), Expect = 1.0e-06, Sum P(4) = 1.0e-06
Identities = 23/53 (43%), Positives = 33/53 (62%)
Query: 907 WFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFL 959
W +VLDEA +IKN R+ +A +RR L+GTP+QN + +L+S FL
Sbjct: 818 WQYMVLDEAHNIKNFRSTRWQALLNFNTQRRLLLTGTPLQNNLAELWSLLYFL 870
Score = 92 (37.4 bits), Expect = 1.0e-06, Sum P(4) = 1.0e-06
Identities = 65/290 (22%), Positives = 110/290 (37%)
Query: 427 NSSYHDGCNSFPFKDSGQSFIGLSPSLLSQNQVVHAKEEHE---DLILESKRARFCQEIC 483
N DG +S P DS + S + + E+ E D+ LE+ A E
Sbjct: 464 NQVNDDGRSSTPSSDSND-VLSESDDDMDDELSTSSDEDEEVDADVGLENSPAS--TEAT 520
Query: 484 DGSSSRSPIDGRHLSLNLNGSRQYFPYAQPS----TLNKKELDGVKEDMEAEIKTRSMAS 539
S + I + + NGS + TL+K E E+ + T +S
Sbjct: 521 PTDESLNLIQLKEKYGHFNGSSTVYDSRNKDEKFPTLDKHE----SSSSESSVMTGEESS 576
Query: 540 HLLKLSPESIQSNSSDCKSHVDDEPDICILEDISQPARSNQSLVLGKTLSMNRSACSNHS 599
+ S E+ N +D +S D P + + + S+ L L + ++ S
Sbjct: 577 --IYSSSENESQNENDRESD-DKTPSVGLSALFGKGEESDGDLDLDDSEDFTVNSSSVEG 633
Query: 600 VALGKPVVTSQHSSYSDYPGYPGVPLTGLGGMKSKASDERLILQVAMQGISQPNAEASAP 659
L K V + +++ + +K D +Q + + P
Sbjct: 634 EELEKDQVDNSAATFERAGDFVHTQNENRDDIKDVEEDAETKVQEEQLSV----VDVPVP 689
Query: 660 DGVLAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 709
+L L +Q+ L+W+ + H + GILAD+ GLGKTI TI+L+
Sbjct: 690 S-LLRGNLRTYQKQGLNWLASLYNN--H-TNGILADEMGLGKTIQTISLL 735
Score = 62 (26.9 bits), Expect = 1.0e-06, Sum P(4) = 1.0e-06
Identities = 21/61 (34%), Positives = 29/61 (47%)
Query: 781 LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCELA-----KFDVVITTYSI 835
L+V PTSVL W E+ K + G VL Y+GS + + F V I +Y +
Sbjct: 749 LIVVPTSVLLNW--EMEFKRFAPG-FKVLTYYGSPQQRKEKRKGWNKPDAFHVCIVSYQL 805
Query: 836 V 836
V
Sbjct: 806 V 806
Score = 41 (19.5 bits), Expect = 1.0e-06, Sum P(4) = 1.0e-06
Identities = 10/25 (40%), Positives = 13/25 (52%)
Query: 980 KNPVKGYKKLQAVLKTIMLRRTKGE 1004
K K KL VL+ +LRR K +
Sbjct: 912 KETKKTVAKLHQVLRPYLLRRLKAD 936
>UNIPROTKB|Q9P2D1 [details] [associations]
symbol:CHD7 "Chromodomain-helicase-DNA-binding protein 7"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0016568 "chromatin modification" evidence=IEA]
[GO:0007512 "adult heart development" evidence=IEA] [GO:0007605
"sensory perception of sound" evidence=IEA] [GO:0007628 "adult
walking behavior" evidence=IEA] [GO:0008015 "blood circulation"
evidence=IEA] [GO:0030540 "female genitalia development"
evidence=IEA] [GO:0035116 "embryonic hindlimb morphogenesis"
evidence=IEA] [GO:0040018 "positive regulation of multicellular
organism growth" evidence=IEA] [GO:0048752 "semicircular canal
morphogenesis" evidence=IEA] [GO:0048844 "artery morphogenesis"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA;TAS] [GO:0005515
"protein binding" evidence=IPI] [GO:0001701 "in utero embryonic
development" evidence=IMP] [GO:0003007 "heart morphogenesis"
evidence=IMP] [GO:0042472 "inner ear morphogenesis" evidence=IMP]
[GO:0043584 "nose development" evidence=IMP] [GO:0048806 "genitalia
development" evidence=IMP] [GO:0060021 "palate development"
evidence=IMP] [GO:0060041 "retina development in camera-type eye"
evidence=IMP] [GO:0001501 "skeletal system development"
evidence=IMP] [GO:0050890 "cognition" evidence=IMP] [GO:0007417
"central nervous system development" evidence=IMP] [GO:0021545
"cranial nerve development" evidence=IMP] [GO:0060123 "regulation
of growth hormone secretion" evidence=IMP] [GO:0003682 "chromatin
binding" evidence=TAS] [GO:0030217 "T cell differentiation"
evidence=IMP] [GO:0060173 "limb development" evidence=IMP]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=NAS] [GO:0060324 "face development" evidence=IMP]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271
Pfam:PF07533 PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 SMART:SM00592 SMART:SM00717
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0003677 GO:GO:0008015 GO:GO:0003007 GO:GO:0050890
GO:GO:0001701 GO:GO:0040018 GO:GO:0007417 GO:GO:0006351
GO:GO:0003682 GO:GO:0016568 GO:GO:0048806 GO:GO:0042472
GO:GO:0001501 GO:GO:0060041 GO:GO:0007605 GO:GO:0007512
GO:GO:0004386 GO:GO:0035116 GO:GO:0060324 GO:GO:0060021
GO:GO:0060173 GO:GO:0048844 InterPro:IPR016197 SUPFAM:SSF54160
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0030540 GO:GO:0007628 GO:GO:0030217 GO:GO:0048752
InterPro:IPR023780 PROSITE:PS00598 HOVERGEN:HBG081150 CTD:55636
KO:K14437 OrthoDB:EOG4MCWZD EMBL:AC023102 EMBL:AC113143
EMBL:AB037837 EMBL:AK000364 EMBL:AK000368 EMBL:BC014681
EMBL:BC051264 EMBL:BC053890 EMBL:BC068000 EMBL:BC080627
EMBL:BC110818 IPI:IPI00472901 IPI:IPI00794880 RefSeq:NP_060250.2
UniGene:Hs.20395 UniGene:Hs.733236 PDB:2CKC PDB:2V0E PDB:2V0F
PDBsum:2CKC PDBsum:2V0E PDBsum:2V0F ProteinModelPortal:Q9P2D1
SMR:Q9P2D1 DIP:DIP-48685N IntAct:Q9P2D1 STRING:Q9P2D1
PhosphoSite:Q9P2D1 DMDM:148877246 PaxDb:Q9P2D1 PRIDE:Q9P2D1
Ensembl:ENST00000307121 Ensembl:ENST00000423902
Ensembl:ENST00000525508 GeneID:55636 KEGG:hsa:55636 UCSC:uc003xue.3
GeneCards:GC08P061642 H-InvDB:HIX0007533 HGNC:HGNC:20626 MIM:214800
MIM:608765 MIM:608892 MIM:612370 neXtProt:NX_Q9P2D1 Orphanet:138
Orphanet:478 Orphanet:432 PharmGKB:PA134948695 InParanoid:Q9P2D1
OMA:TFGVIFD EvolutionaryTrace:Q9P2D1 GenomeRNAi:55636 NextBio:60291
ArrayExpress:Q9P2D1 Bgee:Q9P2D1 CleanEx:HS_CHD7
Genevestigator:Q9P2D1 GermOnline:ENSG00000171316 GO:GO:0021545
GO:GO:0043584 GO:GO:0060123 Uniprot:Q9P2D1
Length = 2997
Score = 136 (52.9 bits), Expect = 1.0e-06, Sum P(4) = 1.0e-06
Identities = 35/104 (33%), Positives = 55/104 (52%)
Query: 902 LAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRY 961
L + W VV+DEA +KN ++ + + + L+GTP+QN +++L+S FL
Sbjct: 1094 LRNIPWRCVVIDEAHRLKNRNCKLLEGLKMMDLEHKVLLTGTPLQNTVEELFSLLHFLEP 1153
Query: 962 DPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGED 1005
F +F ++ V+ KLQA+LK +MLRR K ED
Sbjct: 1154 SRFPSETTFMQEFGDLKTEEQVQ---KLQAILKPMMLRRLK-ED 1193
Score = 74 (31.1 bits), Expect = 1.0e-06, Sum P(4) = 1.0e-06
Identities = 29/100 (29%), Positives = 44/100 (44%)
Query: 760 GSSAKSFNFVEQAKGRPAAGT-LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSS--- 815
G + +S F+ + + G LV+ P S + W E R L+V+VYHGS
Sbjct: 998 GKTIQSITFLYEIYLKGIHGPFLVIAPLSTIPNWEREFRTWT----ELNVVVYHGSQASR 1053
Query: 816 RT--------KDPCELA-----KFDVVITTYSIVSMEVPK 842
RT KDP KF +ITT+ ++ + P+
Sbjct: 1054 RTIQLYEMYFKDPQGRVIKGSYKFHAIITTFEMILTDCPE 1093
Score = 64 (27.6 bits), Expect = 1.0e-06, Sum P(4) = 1.0e-06
Identities = 15/43 (34%), Positives = 25/43 (58%)
Query: 667 LLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 709
L +Q ++W++ + +C ILAD+ GLGKTI +I +
Sbjct: 968 LREYQLEGVNWLLFNWYNMRNC---ILADEMGLGKTIQSITFL 1007
Score = 39 (18.8 bits), Expect = 1.0e-06, Sum P(4) = 1.0e-06
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 516 LNKKELDGVKEDMEAEIKTRSMA 538
LN+ LDG +E E + K RS A
Sbjct: 629 LNRNSLDGSQE--EKKKKKRSKA 649
>TAIR|locus:2054011 [details] [associations]
symbol:CHR8 "chromatin remodeling 8" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA;ISS]
[GO:0004386 "helicase activity" evidence=IEA;ISS] [GO:0005524 "ATP
binding" evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM]
[GO:0006281 "DNA repair" evidence=IMP] [GO:0010332 "response to
gamma radiation" evidence=IMP] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0003677 GO:GO:0006281 GO:GO:0010332 GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
EMBL:AC005724 HOGENOM:HOG000170952 KO:K10841 IPI:IPI00524515
PIR:C84568 RefSeq:NP_179466.1 UniGene:At.39947
ProteinModelPortal:Q9ZV43 SMR:Q9ZV43 STRING:Q9ZV43 PaxDb:Q9ZV43
PRIDE:Q9ZV43 EnsemblPlants:AT2G18760.1 GeneID:816391
KEGG:ath:AT2G18760 TAIR:At2g18760 InParanoid:Q9ZV43 OMA:TETSNIF
PhylomeDB:Q9ZV43 ProtClustDB:CLSN2683061 ArrayExpress:Q9ZV43
Genevestigator:Q9ZV43 Uniprot:Q9ZV43
Length = 1187
Score = 112 (44.5 bits), Expect = 1.2e-06, Sum P(3) = 1.2e-06
Identities = 28/85 (32%), Positives = 41/85 (48%)
Query: 902 LAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRY 961
L + W VLDE I+N + + C L+ R ++G PIQN + +L+S F F+
Sbjct: 534 LLNIEWGYAVLDEGHRIRNPNSDITLVCKQLQTVHRIIMTGAPIQNKLTELWSLFDFVFP 593
Query: 962 DPFAVYKSFCSMIKVPISKNPVKGY 986
V F + VPI+ V GY
Sbjct: 594 GKLGVLPVFEAEFSVPIT---VGGY 615
Score = 85 (35.0 bits), Expect = 1.2e-06, Sum P(3) = 1.2e-06
Identities = 17/45 (37%), Positives = 28/45 (62%)
Query: 667 LLRHQRIALSWMVQKETSSLHC--SGGILADDQGLGKTISTIALI 709
L +QR+ + W+ + LHC +GGI+ D+ GLGKTI ++ +
Sbjct: 385 LFDYQRVGVQWLWE-----LHCQRAGGIIGDEMGLGKTIQVLSFL 424
Score = 56 (24.8 bits), Expect = 1.2e-06, Sum P(3) = 1.2e-06
Identities = 7/16 (43%), Positives = 13/16 (81%)
Query: 780 TLVVCPTSVLRQWAEE 795
++++CP ++LRQW E
Sbjct: 436 SIIICPVTLLRQWRRE 451
>UNIPROTKB|F1NSG3 [details] [associations]
symbol:CHD7 "Chromodomain-helicase-DNA-binding protein 7"
species:9031 "Gallus gallus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0008015 "blood circulation" evidence=IEA] [GO:0021545 "cranial
nerve development" evidence=IEA] [GO:0030217 "T cell
differentiation" evidence=IEA] [GO:0030540 "female genitalia
development" evidence=IEA] [GO:0035116 "embryonic hindlimb
morphogenesis" evidence=IEA] [GO:0040018 "positive regulation of
multicellular organism growth" evidence=IEA] [GO:0043584 "nose
development" evidence=IEA] [GO:0048752 "semicircular canal
morphogenesis" evidence=IEA] [GO:0048844 "artery morphogenesis"
evidence=IEA] [GO:0050890 "cognition" evidence=IEA] [GO:0060021
"palate development" evidence=IEA] [GO:0060041 "retina development
in camera-type eye" evidence=IEA] [GO:0060123 "regulation of growth
hormone secretion" evidence=IEA] [GO:0060324 "face development"
evidence=IEA] [GO:0001501 "skeletal system development"
evidence=IEA] [GO:0001701 "in utero embryonic development"
evidence=IEA] [GO:0003007 "heart morphogenesis" evidence=IEA]
[GO:0007417 "central nervous system development" evidence=IEA]
[GO:0007512 "adult heart development" evidence=IEA] [GO:0007605
"sensory perception of sound" evidence=IEA] [GO:0007628 "adult
walking behavior" evidence=IEA] InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271 Pfam:PF07533
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
SMART:SM00592 SMART:SM00717 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0040018 GO:GO:0003682
GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780 IPI:IPI00590082
OMA:TFGVIFD GO:GO:0060123 GeneTree:ENSGT00560000077077
EMBL:AADN02022009 EMBL:AADN02022010 Ensembl:ENSGALT00000024950
ArrayExpress:F1NSG3 Uniprot:F1NSG3
Length = 2248
Score = 135 (52.6 bits), Expect = 1.2e-06, Sum P(2) = 1.2e-06
Identities = 35/104 (33%), Positives = 55/104 (52%)
Query: 902 LAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRY 961
L + W VV+DEA +KN ++ + + + L+GTP+QN +++L+S FL
Sbjct: 332 LRNIPWRCVVIDEAHRLKNRNCKLLEGLKMMDLEHKVLLTGTPLQNTVEELFSLLHFLEP 391
Query: 962 DPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGED 1005
F +F ++ V+ KLQA+LK +MLRR K ED
Sbjct: 392 GRFPSETTFMQEFGDLKTEEQVQ---KLQAILKPMMLRRLK-ED 431
Score = 76 (31.8 bits), Expect = 1.2e-06, Sum P(2) = 1.2e-06
Identities = 40/152 (26%), Positives = 63/152 (41%)
Query: 712 ERPPSFR-TEDDNKRQLETLNLDEEDNGIQVNGLDLVKQESDYCRVVPN---GSSAKSFN 767
ERPP+ + ++ R+ + N E VN L + C + G + +S
Sbjct: 184 ERPPADDWKKSESSREYKNNNKLREYQLEGVNWLLFNWYNTRNCILADEMGLGKTIQSIT 243
Query: 768 FVEQAKGRPAAGT-LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSS---RT------ 817
F+ + + G LV+ P S + W E R L+V+VYHGS RT
Sbjct: 244 FLYEIYLKGIHGPFLVIAPLSTIPNWEREFRTWT----ELNVVVYHGSQASRRTIQLYEM 299
Query: 818 --KDPCELA-----KFDVVITTYSIVSMEVPK 842
KDP KF +ITT+ ++ + P+
Sbjct: 300 YFKDPQGRVIKGSYKFHAIITTFEMILTDCPE 331
Score = 66 (28.3 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
Identities = 15/43 (34%), Positives = 26/43 (60%)
Query: 667 LLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 709
L +Q ++W++ ++ +C ILAD+ GLGKTI +I +
Sbjct: 206 LREYQLEGVNWLLFNWYNTRNC---ILADEMGLGKTIQSITFL 245
>UNIPROTKB|B6ZLK2 [details] [associations]
symbol:CHD1 "Chromodomain-helicase-DNA-binding protein 1"
species:9031 "Gallus gallus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0000775
"chromosome, centromeric region" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013
PROSITE:PS51194 SMART:SM00298 SMART:SM00490 Pfam:PF00385
GO:GO:0005524 GO:GO:0005634 GO:GO:0000775 GO:GO:0006355
GO:GO:0003677 GO:GO:0006351 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR023780 InterPro:IPR023779
PROSITE:PS00598 EMBL:AB465210 IPI:IPI00573130 UniGene:Gga.4301
UniGene:Gga.8463 STRING:B6ZLK2 HOVERGEN:HBG005325
InterPro:IPR025260 Pfam:PF13907 Uniprot:B6ZLK2
Length = 1719
Score = 117 (46.2 bits), Expect = 1.2e-06, Sum P(4) = 1.2e-06
Identities = 27/101 (26%), Positives = 51/101 (50%)
Query: 902 LAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRY 961
L + W + +DEA +KN + + + ++ R ++GTP+QN++ +L+S F+
Sbjct: 599 LGGLNWAFIGVDEAHRLKNDDSLLYKTLIDFKSNHRLLITGTPLQNSLKELWSLLHFIMP 658
Query: 962 DPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTK 1002
+ F+ ++ F + K GY L L+ +LRR K
Sbjct: 659 EKFSSWEDF----EEEHGKGREYGYASLHKELEPFLLRRVK 695
Score = 76 (31.8 bits), Expect = 1.2e-06, Sum P(4) = 1.2e-06
Identities = 52/203 (25%), Positives = 81/203 (39%)
Query: 515 TLNKKELDGVKEDMEAEIKTRSMASHLLKLSPESIQSNSSDCKSHVDDE--PDICILEDI 572
TL ++ + G+K+ + K + L SPE ++ + C+ + D+ I+E I
Sbjct: 333 TLKQQNVKGMKKLDNYKKKDQETKRWLKNASPEDVEYYN--CQQELTDDLHKQYQIVERI 390
Query: 573 SQPARSNQSLVLG------KTLSMNRSACSNHSVALGKPVVTSQHSSYSDYPGYPGVPLT 626
A SNQ G K + S CS AL ++ Y P
Sbjct: 391 I--AHSNQKSAAGYPDYYCKWQGLPYSECSWEDGALIAKKFQARIDEYFSRNQSKTTPFK 448
Query: 627 GLGGMKSKASDERLILQVAMQGISQPNAEASAPDGVLAVPLLRHQRIALSWMVQKETSSL 686
+K + R VA++ QP S G ++ L +Q L+W+
Sbjct: 449 DCKVLKQRP---RF---VALK--KQP----SYIGGHESLELRDYQLNGLNWLAHSWCKGN 496
Query: 687 HCSGGILADDQGLGKTISTIALI 709
C ILAD+ GLGKTI TI+ +
Sbjct: 497 SC---ILADEMGLGKTIQTISFL 516
Score = 55 (24.4 bits), Expect = 1.2e-06, Sum P(4) = 1.2e-06
Identities = 20/66 (30%), Positives = 33/66 (50%)
Query: 781 LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSS------RTKD---P-CELAKFDVVI 830
L+V P S L W E++ T ++ +VY G RT + P + KF++++
Sbjct: 530 LLVVPLSTLTSWQREIQ---TWAPQMNAVVYLGDITSRNMIRTHEWMHPQTKRLKFNILL 586
Query: 831 TTYSIV 836
TTY I+
Sbjct: 587 TTYEIL 592
Score = 55 (24.4 bits), Expect = 1.2e-06, Sum P(4) = 1.2e-06
Identities = 30/125 (24%), Positives = 51/125 (40%)
Query: 96 SGAESGGLGDSSSQLEPTEQKCSPLQTCSASFSDWFNQNSGTCCPESVGI-SQFETPGCS 154
+ ++SG DSSS + + S + DW Q SG+ G S+ E G
Sbjct: 112 ASSDSGSEEDSSSSEDSADDSSSETKKKKHKDEDW--QMSGSGSVSGTGSDSESEEDGDK 169
Query: 155 TASSFSEGDGYHFLDHRNTLDFGVLGAKAGIRFGHVGSHIDSRSVDASPSSITENFDERY 214
++ SE D Y + +N + ++ + G + R +D+S E+ DE Y
Sbjct: 170 SSCEESESD-Y---EPKNKVKSRKPPSRIKPKSGKKSTGQKKRQLDSSEEE--EDDDEDY 223
Query: 215 GHYGA 219
G+
Sbjct: 224 DKRGS 228
Score = 44 (20.5 bits), Expect = 1.4e-05, Sum P(4) = 1.4e-05
Identities = 18/57 (31%), Positives = 24/57 (42%)
Query: 438 PFKDSGQSFIGLSPSLLS-QNQVVHAKEEHEDLILESKRARFCQEICDGSSSRSPID 493
P K G F SPS+L+ Q V K++ + S +E D SSS D
Sbjct: 78 PPKADGSEFWKSSPSILAVQRSAVLKKQQQQQKAASSDSGS--EE--DSSSSEDSAD 130
Score = 39 (18.8 bits), Expect = 4.2e-05, Sum P(4) = 4.2e-05
Identities = 18/71 (25%), Positives = 30/71 (42%)
Query: 96 SGAESGGLGDSSSQL--EPTEQKCSPLQTCSASFSDWFNQNSGTCCPESVGIS-QFETPG 152
SG+ESG +S S E + + P + + F W + S S + Q +
Sbjct: 53 SGSESGSQSESESDTSREKKQVQAKPPKADGSEF--WKSSPSILAVQRSAVLKKQQQQQK 110
Query: 153 CSTASSFSEGD 163
+++ S SE D
Sbjct: 111 AASSDSGSEED 121
>ZFIN|ZDB-GENE-070912-179 [details] [associations]
symbol:chd7 "chromodomain helicase DNA binding
protein 7" species:7955 "Danio rerio" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0016817 "hydrolase
activity, acting on acid anhydrides" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0007368 "determination of left/right symmetry"
evidence=IMP] [GO:0001756 "somitogenesis" evidence=IMP] [GO:0060041
"retina development in camera-type eye" evidence=IMP] [GO:0021602
"cranial nerve morphogenesis" evidence=IMP] [GO:0001947 "heart
looping" evidence=IMP] [GO:0030282 "bone mineralization"
evidence=IMP] [GO:0042472 "inner ear morphogenesis" evidence=IMP]
[GO:0014029 "neural crest formation" evidence=IMP]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271 Pfam:PF07533
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
SMART:SM00592 Pfam:PF00385 ZFIN:ZDB-GENE-070912-179 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0001756 GO:GO:0042472
GO:GO:0060041 GO:GO:0004386 GO:GO:0001947 GO:GO:0030282
InterPro:IPR016197 SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR023780 GeneTree:ENSGT00560000077077
GO:GO:0021602 EMBL:CR450710 GO:GO:0014029 IPI:IPI00493585
Ensembl:ENSDART00000016208 Ensembl:ENSDART00000135230
Uniprot:F1QGL1
Length = 3140
Score = 139 (54.0 bits), Expect = 1.4e-06, Sum P(5) = 1.4e-06
Identities = 35/104 (33%), Positives = 55/104 (52%)
Query: 902 LAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRY 961
L V W V++DEA +KN ++ + + + L+GTP+QN +++L+S FL
Sbjct: 1138 LRNVPWRCVIIDEAHRLKNRNCKLLEGLKMMDMEHKVLLTGTPLQNTVEELFSLLNFLEP 1197
Query: 962 DPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGED 1005
D F +F ++ V+ KLQ +LK +MLRR K ED
Sbjct: 1198 DRFPSESTFMQEFGDLKTEEQVQ---KLQGILKPMMLRRLK-ED 1237
Score = 67 (28.6 bits), Expect = 1.4e-06, Sum P(5) = 1.4e-06
Identities = 27/100 (27%), Positives = 43/100 (43%)
Query: 760 GSSAKSFNFVEQAKGRPAAGT-LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSS--- 815
G + +S F+ + + G LV+ P S + W E R L+V+VYHGS
Sbjct: 1042 GKTIQSITFLYEIYLKGIHGPFLVIAPLSTIPNWEREFRTWT----ELNVVVYHGSQASR 1097
Query: 816 RTKDPCELA-------------KFDVVITTYSIVSMEVPK 842
+T E+ KF VITT+ ++ + P+
Sbjct: 1098 KTIQAYEMYYRDTQGRIIKGAYKFHAVITTFEMILTDCPE 1137
Score = 66 (28.3 bits), Expect = 1.4e-06, Sum P(5) = 1.4e-06
Identities = 15/43 (34%), Positives = 26/43 (60%)
Query: 667 LLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 709
L +Q ++W++ ++ +C ILAD+ GLGKTI +I +
Sbjct: 1012 LREYQLEGVNWLLFNWYNTRNC---ILADEMGLGKTIQSITFL 1051
Score = 44 (20.5 bits), Expect = 1.4e-06, Sum P(5) = 1.4e-06
Identities = 9/17 (52%), Positives = 10/17 (58%)
Query: 615 SDYPGYPGVPLTGLGGM 631
+D GYPGVP G M
Sbjct: 453 TDVGGYPGVPHQSQGPM 469
Score = 41 (19.5 bits), Expect = 1.4e-06, Sum P(5) = 1.4e-06
Identities = 9/21 (42%), Positives = 12/21 (57%)
Query: 498 SLNLNGSRQYFPYAQPSTLNK 518
S +N S QY PY+ LN+
Sbjct: 309 SNTVNSSGQYPPYSSYGNLNQ 329
>ASPGD|ASPL0000042729 [details] [associations]
symbol:AN2278 species:162425 "Emericella nidulans"
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0016586 "RSC complex" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
Pfam:PF08880 PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194
SMART:SM00297 SMART:SM00490 SMART:SM00951 GO:GO:0005524
GO:GO:0005634 GO:GO:0006355 GO:GO:0003677 EMBL:BN001307
GO:GO:0004386 EMBL:AACD01000038 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370
InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529 PROSITE:PS51204
HOGENOM:HOG000172362 KO:K11786 OrthoDB:EOG4D565R RefSeq:XP_659882.1
ProteinModelPortal:Q5BB02 STRING:Q5BB02
EnsemblFungi:CADANIAT00008970 GeneID:2875521 KEGG:ani:AN2278.2
OMA:GSDHSSP Uniprot:Q5BB02
Length = 1407
Score = 105 (42.0 bits), Expect = 1.5e-06, Sum P(4) = 1.5e-06
Identities = 25/100 (25%), Positives = 50/100 (50%)
Query: 902 LAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKR-RWCLSGTPIQNAIDDLYSYFRFLR 960
L+K+ W +++DE +KN +++++ R R L+GTP+QN + +L++ F+
Sbjct: 653 LSKIKWTHMIVDEGHRMKNTQSKLSSTLSQYYTSRYRLILTGTPLQNNLPELWALLNFVL 712
Query: 961 YDPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRR 1000
+ F KSF P + + L + +++RR
Sbjct: 713 PNIFKSVKSFDEWFNTPFANTGGQDRMDLTEEEQLLVIRR 752
Score = 93 (37.8 bits), Expect = 1.5e-06, Sum P(4) = 1.5e-06
Identities = 22/51 (43%), Positives = 31/51 (60%)
Query: 659 PDGVLAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 709
P ++ L +Q L WM+ ++L+ GILAD+ GLGKTI TI+LI
Sbjct: 529 PSILVGGTLKEYQMKGLQWMISLYNNNLN---GILADEMGLGKTIQTISLI 576
Score = 59 (25.8 bits), Expect = 1.5e-06, Sum P(4) = 1.5e-06
Identities = 19/65 (29%), Positives = 30/65 (46%)
Query: 781 LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHG--SSRTKDPCEL--AKFDVVITTYSIV 836
LV+ P S L W E S +S +VY G ++R + + F V++TTY +
Sbjct: 590 LVIVPLSTLTNWNLEFEKWAPS---VSRIVYKGPPNARKQQQQNIRWGNFQVLLTTYEYI 646
Query: 837 SMEVP 841
+ P
Sbjct: 647 IKDRP 651
Score = 42 (19.8 bits), Expect = 1.5e-06, Sum P(4) = 1.5e-06
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 58 SQDELVQDVGSHSNLQLQSGFKG 80
+ + VQDVGS S L Q+ KG
Sbjct: 109 TSNNAVQDVGSASALGQQNHQKG 131
>UNIPROTKB|I3LDG1 [details] [associations]
symbol:LOC100738357 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR002464 Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003677
InterPro:IPR014001 PROSITE:PS51192 GO:GO:0008026
GeneTree:ENSGT00560000077077 EMBL:FP236283
Ensembl:ENSSSCT00000031310 OMA:ENWRTEL Uniprot:I3LDG1
Length = 323
Score = 143 (55.4 bits), Expect = 1.6e-06, P = 1.6e-06
Identities = 33/103 (32%), Positives = 56/103 (54%)
Query: 902 LAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRY 961
L K+ W V++DEA +KN ++ + + + L+GTP+QN++++L+S FL
Sbjct: 9 LKKIHWSCVIIDEAHRLKNRNCKLLEGLKLMALEHKVLLTGTPLQNSVEELFSLLNFLEP 68
Query: 962 DPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGE 1004
F +F ++ VK KLQ++LK +MLRR K +
Sbjct: 69 SQFPSETAFLEEFGDLKTEEQVK---KLQSILKPMMLRRLKDD 108
>UNIPROTKB|J9NX79 [details] [associations]
symbol:CHD2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 GeneTree:ENSGT00560000076896
EMBL:AAEX03002279 EMBL:AAEX03002280 Ensembl:ENSCAFT00000044612
Uniprot:J9NX79
Length = 1689
Score = 127 (49.8 bits), Expect = 1.6e-06, Sum P(4) = 1.6e-06
Identities = 28/101 (27%), Positives = 52/101 (51%)
Query: 902 LAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRY 961
L + W + +DEA +KN + + + ++ R ++GTP+QN++ +L+S F+
Sbjct: 575 LGSINWAFLGVDEAHRLKNDDSLLYKTLIDFKSHHRLLITGTPLQNSLKELWSLLHFIMP 634
Query: 962 DPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTK 1002
+ F ++ F + K GY+ L VL+ +LRR K
Sbjct: 635 EKFEFWEDF----EEDHGKGRENGYQSLHKVLEPFLLRRVK 671
Score = 86 (35.3 bits), Expect = 1.6e-06, Sum P(4) = 1.6e-06
Identities = 50/200 (25%), Positives = 88/200 (44%)
Query: 515 TLNKKELDGVKEDMEAEIKTRSMASHLLKLSPESIQ--SNSSDCKSHVDDEPDICILEDI 572
+L ++++ G+K+ + K + L K+SPE ++ + + S ++ + I + +I
Sbjct: 310 SLQQQKVKGLKKLENFKKKEDEIKQWLGKVSPEDVEYFNCQQELASELNKQYQI-VEREI 368
Query: 573 S---QPARSNQSLVLGKTLSMNRSACSNHSVALGKPVVTSQHSSYSDYPGYPGVPLTGLG 629
+ +PA SN+ L K + + S CS AL S S+ +P
Sbjct: 369 AHSRKPAPSNEPEYLCKWMGLPYSECSWEDEALIGKKFQSCIDSFHSRNNSKTIPTRECK 428
Query: 630 GMKSKASDERLILQVAMQGISQPNAEASAPDGVLAVPLLRHQRIALSWMVQKETSSLHCS 689
+K + R VA++ QP G + L +Q L+W+ S +
Sbjct: 429 ALKQRP---RF---VALK--KQPTYL-----GGENLELRDYQLEGLNWLAHSWCKS---N 472
Query: 690 GGILADDQGLGKTISTIALI 709
ILAD+ GLGKTI TI+ +
Sbjct: 473 SVILADEMGLGKTIQTISFL 492
Score = 51 (23.0 bits), Expect = 1.6e-06, Sum P(4) = 1.6e-06
Identities = 18/66 (27%), Positives = 32/66 (48%)
Query: 781 LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPC----------ELAKFDVVI 830
L+V P S L W E ++ + ++V+VY G +++ + KF+ +I
Sbjct: 506 LIVVPLSTLTSWQREF--EIWAP-EINVVVYIGDLMSRNTIREYEWIHSQTKRLKFNALI 562
Query: 831 TTYSIV 836
TTY I+
Sbjct: 563 TTYEIL 568
Score = 37 (18.1 bits), Expect = 1.6e-06, Sum P(4) = 1.6e-06
Identities = 8/21 (38%), Positives = 11/21 (52%)
Query: 288 DPSSFNFQHLLSSEETATKPK 308
+PS FN + SS + PK
Sbjct: 102 EPSRFNIKEEASSGSESGSPK 122
>TAIR|locus:2054955 [details] [associations]
symbol:ASG3 "ALTERED SEED GERMINATION 3" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA;ISS]
[GO:0004386 "helicase activity" evidence=IEA;ISS] [GO:0005524 "ATP
binding" evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:CP002685
GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 IPI:IPI00520375 RefSeq:NP_973689.2 UniGene:At.47803
ProteinModelPortal:F4IV45 SMR:F4IV45 PRIDE:F4IV45
EnsemblPlants:AT2G44980.2 GeneID:819106 KEGG:ath:AT2G44980
OMA:WALMHFC PhylomeDB:F4IV45 ArrayExpress:F4IV45 Uniprot:F4IV45
Length = 877
Score = 116 (45.9 bits), Expect = 1.6e-06, Sum P(3) = 1.6e-06
Identities = 34/109 (31%), Positives = 52/109 (47%)
Query: 902 LAKVGWFRVVLDEAQSIKNHRTQVARACWG-LRAKRRWCLSGTPIQNAIDDLYSYFRFLR 960
L+++ W ++DEAQ +KN + + RR ++GTPIQN + +L++ F
Sbjct: 178 LSQIPWQYAIIDEAQRLKNPNSVLYNVLLEQFLIPRRLLITGTPIQNNLTELWALMHFCM 237
Query: 961 YDPFAVYKSFCSMIKVP---IS----KNPVKGYKKLQAVLKTIMLRRTK 1002
F F S K +S N + YK L+ +L MLRRTK
Sbjct: 238 PLVFGTLDQFLSAFKETGDGLSGLDVSNDKETYKSLKFILGAFMLRRTK 286
Score = 67 (28.6 bits), Expect = 1.6e-06, Sum P(3) = 1.6e-06
Identities = 24/74 (32%), Positives = 37/74 (50%)
Query: 642 LQVAMQGISQPNAEAS--APD----GVLAVPLLRHQRIALSWMVQKETSSLHCSGGILAD 695
L+ A + I + A+ S PD GV A L HQ +SW++QK ++ + D
Sbjct: 21 LEAAAEIILEKEAKFSNTPPDCSEFGVTAT-LKPHQVEGVSWLIQKYLLGVNVV--LELD 77
Query: 696 DQGLGKTISTIALI 709
GLGKT+ I+ +
Sbjct: 78 QMGLGKTLQAISFL 91
Score = 64 (27.6 bits), Expect = 1.6e-06, Sum P(3) = 1.6e-06
Identities = 29/96 (30%), Positives = 43/96 (44%)
Query: 760 GSSAKSFNFVEQAKGRPAA-GT-LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSS-- 815
G + ++ +F+ K R G LV+CP SV W E+ N+ T +L VL Y G
Sbjct: 82 GKTLQAISFLSYLKFRQGLPGPFLVLCPLSVTDGWVSEI-NRFTP--NLEVLRYVGDKYC 138
Query: 816 ---RTKDPCELAK---------FDVVITTYSIVSME 839
K + K FDV++TTY I ++
Sbjct: 139 RLDMRKSMYDHVKKSSKGHFLPFDVLLTTYDIALVD 174
>RGD|1310969 [details] [associations]
symbol:Ino80 "INO80 homolog (S. cerevisiae)" species:10116
"Rattus norvegicus" [GO:0000070 "mitotic sister chromatid
segregation" evidence=ISO] [GO:0000724 "double-strand break repair
via homologous recombination" evidence=ISO] [GO:0003677 "DNA
binding" evidence=IEA;ISO] [GO:0003678 "DNA helicase activity"
evidence=ISO] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO] [GO:0006200 "ATP catabolic process" evidence=ISO]
[GO:0006302 "double-strand break repair" evidence=ISO] [GO:0006338
"chromatin remodeling" evidence=ISO] [GO:0010571 "positive
regulation of DNA replication involved in S phase" evidence=ISO]
[GO:0016887 "ATPase activity" evidence=ISO] [GO:0030307 "positive
regulation of cell growth" evidence=ISO] [GO:0031011 "Ino80
complex" evidence=ISO] [GO:0032508 "DNA duplex unwinding"
evidence=ISO] [GO:0034644 "cellular response to UV" evidence=ISO]
[GO:0043014 "alpha-tubulin binding" evidence=ISO] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=ISO] [GO:0051225 "spindle assembly"
evidence=ISO] [GO:0070914 "UV-damage excision repair" evidence=ISO]
[GO:0071479 "cellular response to ionizing radiation" evidence=ISO]
[GO:2000045 "regulation of G1/S transition of mitotic cell cycle"
evidence=ISO] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF13892
PROSITE:PS51194 PROSITE:PS51413 SMART:SM00490 RGD:1310969
GO:GO:0005524 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GeneTree:ENSGT00680000100052
IPI:IPI00569811 Ensembl:ENSRNOT00000031672 UCSC:RGD:1310969
Uniprot:D4A6Q6
Length = 1553
Score = 110 (43.8 bits), Expect = 1.7e-06, Sum P(4) = 1.7e-06
Identities = 31/106 (29%), Positives = 53/106 (50%)
Query: 904 KVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDP 963
+V W +VLDEAQ++K+ + + + + R L+GTPIQN + +L++ F+
Sbjct: 639 RVKWQYMVLDEAQALKSSSSVRWKILLQFQCRNRLLLTGTPIQNTMAELWALLHFIMPTL 698
Query: 964 FAVYKSFCSMIKVPI-----SKNPV--KGYKKLQAVLKTIMLRRTK 1002
F ++ F I +K+ + +L +LK MLRR K
Sbjct: 699 FDSHEEFNEWFSKDIESHAENKSAIDENQLSRLHMILKPFMLRRIK 744
Score = 75 (31.5 bits), Expect = 1.7e-06, Sum P(4) = 1.7e-06
Identities = 18/46 (39%), Positives = 28/46 (60%)
Query: 670 HQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI--LKER 713
+Q ++W+ ++ GILAD+ GLGKT+ +IAL+ L ER
Sbjct: 523 YQLKGMNWLANLYEQGIN---GILADEMGLGKTVQSIALLAHLAER 565
Score = 67 (28.6 bits), Expect = 1.7e-06, Sum P(4) = 1.7e-06
Identities = 22/65 (33%), Positives = 30/65 (46%)
Query: 781 LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGS--SRTKDPC---ELAKFDVVITTYSI 835
L++ P S L W +E V VL Y G+ R K + A F VVIT+Y +
Sbjct: 573 LIISPASTLNNWHQEFTRFVPK---FKVLPYWGNPHDRKKKKTLYTQDAPFHVVITSYQL 629
Query: 836 VSMEV 840
V +V
Sbjct: 630 VVQDV 634
Score = 48 (22.0 bits), Expect = 1.7e-06, Sum P(4) = 1.7e-06
Identities = 24/92 (26%), Positives = 39/92 (42%)
Query: 15 AADEFADDQGLSIDM--DTLLGILEEEKQPDRVKSSPGDLSLRNLSQDELVQDVGSHSNL 72
A++ A D G ++ L LE + D + RN+S D+ + ++ L
Sbjct: 2 ASELGAGDDGSCTELAKPLYLQYLERPLRLDHFLRQTSAIFTRNISSDDSEDGLDDNNPL 61
Query: 73 QLQSGFKG-DMRDIATYPLYGLEISGAESGGL 103
+SG +++ L G E SGA S GL
Sbjct: 62 LPESGDPLIQVKEEPPNSLLG-ETSGASSSGL 92
>CGD|CAL0005422 [details] [associations]
symbol:ISW2 species:5476 "Candida albicans" [GO:0001410
"chlamydospore formation" evidence=IMP] [GO:0030447 "filamentous
growth" evidence=IMP] [GO:0071280 "cellular response to copper ion"
evidence=IMP] [GO:0035690 "cellular response to drug" evidence=IMP]
[GO:0008623 "CHRAC" evidence=IEA] [GO:0060195 "negative regulation
of antisense RNA transcription" evidence=IEA] [GO:0006338
"chromatin remodeling" evidence=IEA] [GO:0000183 "chromatin
silencing at rDNA" evidence=IEA] [GO:0006369 "termination of RNA
polymerase II transcription" evidence=IEA] [GO:0046020 "negative
regulation of transcription from RNA polymerase II promoter by
pheromones" evidence=IEA] [GO:0006348 "chromatin silencing at
telomere" evidence=IEA] [GO:0016584 "nucleosome positioning"
evidence=IEA] [GO:0015616 "DNA translocase activity" evidence=IEA]
[GO:0003697 "single-stranded DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 CGD:CAL0005422 GO:GO:0005524
GO:GO:0001410 GO:GO:0003677 Gene3D:1.10.10.60 SUPFAM:SSF46689
GO:GO:0071280 GO:GO:0035690 InterPro:IPR017884 PROSITE:PS51293
GO:GO:0004386 EMBL:AACQ01000074 GO:GO:0030447 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0016585
GO:GO:0031491 GO:GO:0043044 SUPFAM:SSF101224 RefSeq:XP_716066.1
ProteinModelPortal:Q5A310 STRING:Q5A310 GeneID:3642235
KEGG:cal:CaO19.7401 Uniprot:Q5A310
Length = 1056
Score = 101 (40.6 bits), Expect = 1.8e-06, Sum P(3) = 1.8e-06
Identities = 21/63 (33%), Positives = 36/63 (57%)
Query: 902 LAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRY 961
L K W +V+DEA IKN + +++ ++ R ++GTP+QN + +L++ FL
Sbjct: 256 LQKFRWEYIVVDEAHRIKNEDSSLSKIIRLFYSRNRLLITGTPLQNNLHELWALLNFLLP 315
Query: 962 DPF 964
D F
Sbjct: 316 DVF 318
Score = 78 (32.5 bits), Expect = 1.8e-06, Sum P(3) = 1.8e-06
Identities = 19/59 (32%), Positives = 30/59 (50%)
Query: 651 QPNAEASAPDGVLAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 709
Q +P + L +Q L+W++ + L GILAD+ GLGKT+ TI+ +
Sbjct: 123 QHTVMTESPSYIKEGKLREYQIQGLNWLISLYENRL---SGILADEMGLGKTLQTISFL 178
Score = 71 (30.1 bits), Expect = 1.8e-06, Sum P(3) = 1.8e-06
Identities = 22/64 (34%), Positives = 33/64 (51%)
Query: 781 LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHG-----SSRTKDPCELAKFDVVITTYSI 835
+V+ P S L W E K T ++V+V G +S KD AKFDV+IT++ +
Sbjct: 192 IVIVPKSTLDNWRREFA-KWTP--DVNVVVLQGDKEQRASIIKDQLYTAKFDVLITSFEM 248
Query: 836 VSME 839
+ E
Sbjct: 249 ILRE 252
>UNIPROTKB|Q5A310 [details] [associations]
symbol:ISW2 "Putative uncharacterized protein ISW2"
species:237561 "Candida albicans SC5314" [GO:0001410 "chlamydospore
formation" evidence=IMP] [GO:0030447 "filamentous growth"
evidence=IMP] [GO:0035690 "cellular response to drug" evidence=IMP]
[GO:0071280 "cellular response to copper ion" evidence=IMP]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 CGD:CAL0005422 GO:GO:0005524
GO:GO:0001410 GO:GO:0003677 Gene3D:1.10.10.60 SUPFAM:SSF46689
GO:GO:0071280 GO:GO:0035690 InterPro:IPR017884 PROSITE:PS51293
GO:GO:0004386 EMBL:AACQ01000074 GO:GO:0030447 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0016585
GO:GO:0031491 GO:GO:0043044 SUPFAM:SSF101224 RefSeq:XP_716066.1
ProteinModelPortal:Q5A310 STRING:Q5A310 GeneID:3642235
KEGG:cal:CaO19.7401 Uniprot:Q5A310
Length = 1056
Score = 101 (40.6 bits), Expect = 1.8e-06, Sum P(3) = 1.8e-06
Identities = 21/63 (33%), Positives = 36/63 (57%)
Query: 902 LAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRY 961
L K W +V+DEA IKN + +++ ++ R ++GTP+QN + +L++ FL
Sbjct: 256 LQKFRWEYIVVDEAHRIKNEDSSLSKIIRLFYSRNRLLITGTPLQNNLHELWALLNFLLP 315
Query: 962 DPF 964
D F
Sbjct: 316 DVF 318
Score = 78 (32.5 bits), Expect = 1.8e-06, Sum P(3) = 1.8e-06
Identities = 19/59 (32%), Positives = 30/59 (50%)
Query: 651 QPNAEASAPDGVLAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 709
Q +P + L +Q L+W++ + L GILAD+ GLGKT+ TI+ +
Sbjct: 123 QHTVMTESPSYIKEGKLREYQIQGLNWLISLYENRL---SGILADEMGLGKTLQTISFL 178
Score = 71 (30.1 bits), Expect = 1.8e-06, Sum P(3) = 1.8e-06
Identities = 22/64 (34%), Positives = 33/64 (51%)
Query: 781 LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHG-----SSRTKDPCELAKFDVVITTYSI 835
+V+ P S L W E K T ++V+V G +S KD AKFDV+IT++ +
Sbjct: 192 IVIVPKSTLDNWRREFA-KWTP--DVNVVVLQGDKEQRASIIKDQLYTAKFDVLITSFEM 248
Query: 836 VSME 839
+ E
Sbjct: 249 ILRE 252
>UNIPROTKB|J9NZH0 [details] [associations]
symbol:SMARCA1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0005634 "nucleus" evidence=IEA]
[GO:0043044 "ATP-dependent chromatin remodeling" evidence=IEA]
[GO:0031491 "nucleosome binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 GO:GO:0005524 GO:GO:0003677
Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR017884
PROSITE:PS51293 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0016585 GO:GO:0031491 GO:GO:0043044
GeneTree:ENSGT00680000100002 SUPFAM:SSF101224 EMBL:AAEX03026896
Ensembl:ENSCAFT00000048721 Uniprot:J9NZH0
Length = 850
Score = 136 (52.9 bits), Expect = 1.9e-06, Sum P(3) = 1.9e-06
Identities = 33/99 (33%), Positives = 51/99 (51%)
Query: 904 KVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDP 963
K W +V+DEA IKN +++++ ++ R L+GTP+QN + +L++ FL D
Sbjct: 94 KFHWRYLVIDEAHRIKNEKSKLSEIVREFKSTNRLLLTGTPLQNNLHELWALLNFLLPDV 153
Query: 964 FAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTK 1002
F F S K ++L AVLK +LRR K
Sbjct: 154 FNSADDFDSWFDTKNCLGDQKLVERLHAVLKPFLLRRIK 192
Score = 57 (25.1 bits), Expect = 1.9e-06, Sum P(3) = 1.9e-06
Identities = 19/64 (29%), Positives = 31/64 (48%)
Query: 781 LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGS--SRT---KDPCELAKFDVVITTYSI 835
+V+ P S L W E + V S L V+ + G +R +D ++DV +T+Y +
Sbjct: 28 MVLVPKSTLYNWMNEFKRWVPS---LRVICFVGDKDARAAFIRDEMMPGEWDVCVTSYEM 84
Query: 836 VSME 839
V E
Sbjct: 85 VIKE 88
Score = 52 (23.4 bits), Expect = 1.9e-06, Sum P(3) = 1.9e-06
Identities = 10/13 (76%), Positives = 12/13 (92%)
Query: 697 QGLGKTISTIALI 709
QGLGKT+ TIAL+
Sbjct: 2 QGLGKTLQTIALL 14
>POMBASE|SPAC29B12.01 [details] [associations]
symbol:ino80 "SNF2 family helicase Ino80" species:4896
"Schizosaccharomyces pombe" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006281 "DNA repair"
evidence=ISO] [GO:0006338 "chromatin remodeling" evidence=IPI]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0031011 "Ino80 complex" evidence=IDA] [GO:0043140
"ATP-dependent 3'-5' DNA helicase activity" evidence=ISO]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF13892 PROSITE:PS51194
PROSITE:PS51413 SMART:SM00490 PomBase:SPAC29B12.01 GO:GO:0005524
EMBL:CU329670 GO:GO:0006355 GenomeReviews:CU329670_GR GO:GO:0003677
GO:GO:0006281 GO:GO:0006351 GO:GO:0016568 GO:GO:0031011 HSSP:Q97XQ5
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0043140 KO:K11665 HOGENOM:HOG000048482 OrthoDB:EOG41G6C8
RefSeq:NP_001018299.1 ProteinModelPortal:O14148 STRING:O14148
EnsemblFungi:SPAC29B12.01.1 GeneID:3361566 KEGG:spo:SPAC29B12.01
OMA:INDHNSA NextBio:20811604 Uniprot:O14148
Length = 1604
Score = 124 (48.7 bits), Expect = 2.1e-06, Sum P(4) = 2.1e-06
Identities = 31/105 (29%), Positives = 50/105 (47%)
Query: 905 VGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPF 964
V W ++LDEAQ+IK+ + ++ + + R L+GTPIQN + +L++ F+ F
Sbjct: 969 VKWQYMILDEAQAIKSSSSSRWKSLLAFKCRNRLLLTGTPIQNTMQELWALLHFIMPSLF 1028
Query: 965 AVYKSFCSMIKVPISKNPVKG-------YKKLQAVLKTIMLRRTK 1002
+ F I + K+L +LK MLRR K
Sbjct: 1029 DSHNEFSEWFSKDIESHAQSNTQLNEQQLKRLHMILKPFMLRRVK 1073
Score = 74 (31.1 bits), Expect = 2.1e-06, Sum P(4) = 2.1e-06
Identities = 20/58 (34%), Positives = 32/58 (55%)
Query: 653 NA-EASAPDGVLAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 709
NA E P +L L +Q L+W+ ++ GILAD+ GLGKT+ +I+++
Sbjct: 828 NAFEVKQPK-MLMCKLKEYQLKGLNWLANLYEQGIN---GILADEMGLGKTVQSISVM 881
Score = 60 (26.2 bits), Expect = 2.1e-06, Sum P(4) = 2.1e-06
Identities = 18/46 (39%), Positives = 22/46 (47%)
Query: 781 LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCELAKF 826
LV+ P S L W +E+ V L + Y GS TKD L KF
Sbjct: 895 LVIAPASTLHNWQQEITRFVPK---LKCIPYWGS--TKDRKILRKF 935
Score = 41 (19.5 bits), Expect = 2.1e-06, Sum P(4) = 2.1e-06
Identities = 8/19 (42%), Positives = 14/19 (73%)
Query: 449 LSPSLLSQNQVVHAKEEHE 467
LSP+ SQ+Q+ H + +H+
Sbjct: 271 LSPNS-SQSQITHNRRKHK 288
Score = 38 (18.4 bits), Expect = 4.1e-06, Sum P(4) = 4.1e-06
Identities = 9/28 (32%), Positives = 16/28 (57%)
Query: 244 DAEVSSHNVASTD-STICHGSEIISDDD 270
+A ++ V + D S + E++SDDD
Sbjct: 292 NATTNNSVVLTPDTSPLLDSDEVVSDDD 319
>ASPGD|ASPL0000018137 [details] [associations]
symbol:AN4187 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005576
"extracellular region" evidence=IDA] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR016024 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003677 EMBL:BN001302
GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 HOGENOM:HOG000210415 KO:K15192 OMA:TKQEGAI
InterPro:IPR022707 Pfam:PF12054 EMBL:AACD01000068 OrthoDB:EOG44XNQZ
RefSeq:XP_661791.1 ProteinModelPortal:Q5B5J3 STRING:Q5B5J3
EnsemblFungi:CADANIAT00004481 GeneID:2873610 KEGG:ani:AN4187.2
Uniprot:Q5B5J3
Length = 1904
Score = 122 (48.0 bits), Expect = 2.2e-06, Sum P(4) = 2.2e-06
Identities = 39/114 (34%), Positives = 52/114 (45%)
Query: 902 LAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRY 961
L + W VLDE IKN + +V A + + R LSGTPIQN + +L+S F FL
Sbjct: 1443 LRPISWNYCVLDEGHLIKNPKAKVTMAVKRINSNHRLILSGTPIQNNVLELWSLFDFLMP 1502
Query: 962 DPFAVYKSFCSMIKVPI--------SKNPVKGYKKLQAVLKTIM---LRRTKGE 1004
K F PI SK G ++A+ K ++ LRR K E
Sbjct: 1503 GFLGTEKVFLDRFAKPIATSRFSKSSKEQEAGALAIEALHKQVLPFLLRRLKEE 1556
Score = 93 (37.8 bits), Expect = 2.2e-06, Sum P(4) = 2.2e-06
Identities = 34/109 (31%), Positives = 49/109 (44%)
Query: 619 GYPGVPLTGLGGMKSKASD-ERLILQVAMQGISQPNAEASAPDGVLAVPLLRHQRIALSW 677
G P P GL + D ER + + S+ E P + A L +Q+ ++W
Sbjct: 1274 GIPDPP--GLSEKLLEGRDRERKFMSQMLD--SRKVEEFKLPVAIKA-ELRPYQQEGVNW 1328
Query: 678 MVQKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQ 726
+ +LH GIL DD GLGKT+ TI ++ + R ED K Q
Sbjct: 1329 LAFLNRYNLH---GILCDDMGLGKTLQTICIVASDH--HMRAEDFAKTQ 1372
Score = 84 (34.6 bits), Expect = 1.6e-05, Sum P(4) = 1.6e-05
Identities = 27/102 (26%), Positives = 49/102 (48%)
Query: 737 NGIQVNGLDLVKQESDYCRVVPNGSS-AKSFNFVEQAKGRPAAGTLVVCPTSVLRQWAEE 795
+GI + + L K C V + A+ F ++ + R +L++CP S+ W +E
Sbjct: 1338 HGILCDDMGLGKTLQTICIVASDHHMRAEDFAKTQRPESRKVP-SLIICPPSLSGHWQQE 1396
Query: 796 LRNKVTSKGSLSVLVYHG--SSRTKDPCELAKFDVVITTYSI 835
++ L+ + Y G + R+K LA D+V+T+Y I
Sbjct: 1397 VKQYAPF---LNCVAYVGPPAERSKLQGSLADADIVVTSYDI 1435
Score = 45 (20.9 bits), Expect = 2.2e-06, Sum P(4) = 2.2e-06
Identities = 20/94 (21%), Positives = 34/94 (36%)
Query: 443 GQSFIGLSPSLLSQNQVVHAKEEHEDLILESKRARFCQEICDGSSSRSPIDGRHLSLNLN 502
G F L L ++ +K +E + F +E D R +N
Sbjct: 910 GPDFEKLKRLLSPAQRITASKVLNETRVTAENAINFAKEARDTRDMRIKAAAAGALINFG 969
Query: 503 GSRQYFPYAQPSTLNKKELDGVKEDMEAEIKTRS 536
P +P L K ++ +K + AE++ RS
Sbjct: 970 A----IP-KKPGNLIKGVMESIKTEESAELQQRS 998
Score = 42 (19.8 bits), Expect = 2.2e-06, Sum P(4) = 2.2e-06
Identities = 30/131 (22%), Positives = 55/131 (41%)
Query: 1 MLMADNAWLCGEVSAADEFADDQGLSIDMDTLLGILEEEKQPDRVKSSPGDLS--LRNLS 58
+L A +L E +++ D +G+ + LL E+ D +K S S L++L
Sbjct: 602 VLRALTTFLRLEGEGTNDWVDGKGMRLVFQNLL----VERNEDVLKLSLQVWSELLKSLD 657
Query: 59 QDELVQDVGSHSNLQLQSGFKGDMRDIATYPLYGLEISGA---ESGGLGDSSSQLEPTEQ 115
+++ N +Q M PLY + ++ + + GL S ++P
Sbjct: 658 SRGVIKSDPELPN-HIQPLLALSMAPFGV-PLYPIPMNASLFIKPSGL--PFSMVQPAPA 713
Query: 116 KCSPLQTCSAS 126
K SP T S++
Sbjct: 714 KASPTSTTSST 724
Score = 37 (18.1 bits), Expect = 1.3e-05, Sum P(4) = 1.3e-05
Identities = 9/33 (27%), Positives = 16/33 (48%)
Query: 455 SQNQVVHAKEEHEDLILESKRARFCQEICDGSS 487
S+ +EHE LIL ++ +E D ++
Sbjct: 1034 SETPEFERNKEHEGLILSLRKEEDRREHADAAT 1066
>UNIPROTKB|Q06A37 [details] [associations]
symbol:CHD7 "Chromodomain-helicase-DNA-binding protein 7"
species:9031 "Gallus gallus" [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0016568 "chromatin modification"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271
Pfam:PF07533 PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 SMART:SM00592 SMART:SM00717
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0003677 GO:GO:0006351 GO:GO:0003682 GO:GO:0016568
GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
PROSITE:PS00598 HOVERGEN:HBG081150 EMBL:DQ978381 IPI:IPI00590082
RefSeq:NP_001071054.1 UniGene:Gga.20865 ProteinModelPortal:Q06A37
SMR:Q06A37 GeneID:421140 KEGG:gga:421140 CTD:55636
HOGENOM:HOG000246942 InParanoid:Q06A37 KO:K14437 OrthoDB:EOG4MCWZD
NextBio:20823957 Uniprot:Q06A37
Length = 3011
Score = 135 (52.6 bits), Expect = 2.2e-06, Sum P(2) = 2.2e-06
Identities = 35/104 (33%), Positives = 55/104 (52%)
Query: 902 LAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRY 961
L + W VV+DEA +KN ++ + + + L+GTP+QN +++L+S FL
Sbjct: 1095 LRNIPWRCVVIDEAHRLKNRNCKLLEGLKMMDLEHKVLLTGTPLQNTVEELFSLLHFLEP 1154
Query: 962 DPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGED 1005
F +F ++ V+ KLQA+LK +MLRR K ED
Sbjct: 1155 GRFPSETTFMQEFGDLKTEEQVQ---KLQAILKPMMLRRLK-ED 1194
Score = 76 (31.8 bits), Expect = 2.2e-06, Sum P(2) = 2.2e-06
Identities = 40/152 (26%), Positives = 63/152 (41%)
Query: 712 ERPPSFR-TEDDNKRQLETLNLDEEDNGIQVNGLDLVKQESDYCRVVPN---GSSAKSFN 767
ERPP+ + ++ R+ + N E VN L + C + G + +S
Sbjct: 947 ERPPADDWKKSESSREYKNNNKLREYQLEGVNWLLFNWYNTRNCILADEMGLGKTIQSIT 1006
Query: 768 FVEQAKGRPAAGT-LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSS---RT------ 817
F+ + + G LV+ P S + W E R L+V+VYHGS RT
Sbjct: 1007 FLYEIYLKGIHGPFLVIAPLSTIPNWEREFRTWT----ELNVVVYHGSQASRRTIQLYEM 1062
Query: 818 --KDPCELA-----KFDVVITTYSIVSMEVPK 842
KDP KF +ITT+ ++ + P+
Sbjct: 1063 YFKDPQGRVIKGSYKFHAIITTFEMILTDCPE 1094
Score = 66 (28.3 bits), Expect = 2.3e-05, Sum P(2) = 2.3e-05
Identities = 15/43 (34%), Positives = 26/43 (60%)
Query: 667 LLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 709
L +Q ++W++ ++ +C ILAD+ GLGKTI +I +
Sbjct: 969 LREYQLEGVNWLLFNWYNTRNC---ILADEMGLGKTIQSITFL 1008
>DICTYBASE|DDB_G0285205 [details] [associations]
symbol:snf2a "SNF2-related protein SNF2a"
species:44689 "Dictyostelium discoideum" [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0044351 "macropinocytosis" evidence=RCA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR017956
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00384
SMART:SM00490 dictyBase:DDB_G0285205 GO:GO:0005524 GO:GO:0003677
EMBL:AAFI02000075 GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 KO:K11647 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 PROSITE:PS51204 RefSeq:XP_638342.2
ProteinModelPortal:Q54NM0 STRING:Q54NM0 PRIDE:Q54NM0
EnsemblProtists:DDB0233441 GeneID:8624967 KEGG:ddi:DDB_G0285205
OMA:HASKHRV Uniprot:Q54NM0
Length = 1604
Score = 107 (42.7 bits), Expect = 2.5e-06, Sum P(4) = 2.5e-06
Identities = 30/114 (26%), Positives = 54/114 (47%)
Query: 902 LAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRY 961
L +V W +++DE IKN ++++ ++ R L+GTP+QN + +L++ FL
Sbjct: 740 LGRVHWIYIIIDEGHRIKNKNSKLSVQLRQYHSRNRLLLTGTPLQNDLGELWALLNFLLP 799
Query: 962 DPFAVYKSFCSMIKVPIS---KNPVKGYK--------KLQAVLKTIMLRRTKGE 1004
F +F + P KN + + +L VL+ +LRR K +
Sbjct: 800 TIFNSADTFQNWFNAPFQAKGKNLINVNEEESLIIINRLHQVLRFFLLRRLKSD 853
Score = 97 (39.2 bits), Expect = 2.5e-06, Sum P(4) = 2.5e-06
Identities = 26/63 (41%), Positives = 34/63 (53%)
Query: 653 NAEASAPDGVLAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI--L 710
N PD + L +Q L W++ T +L+ GILAD+ GLGKT+ TIA I L
Sbjct: 610 NLVIEQPDLMTGGKLKEYQVTGLEWLISLYTRNLN---GILADEMGLGKTVQTIAFISFL 666
Query: 711 KER 713
ER
Sbjct: 667 YER 669
Score = 53 (23.7 bits), Expect = 2.5e-06, Sum P(4) = 2.5e-06
Identities = 19/60 (31%), Positives = 29/60 (48%)
Query: 781 LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSS--RTKDPCELAK--FDVVITTYSIV 836
LVV P S + W E + + K L V+VY G R + + + F VVIT++ +
Sbjct: 677 LVVAPLSTISNWVSEFA-RWSPK--LHVIVYKGKQDERRETARTIPRNAFCVVITSFEYI 733
Score = 42 (19.8 bits), Expect = 2.5e-06, Sum P(4) = 2.5e-06
Identities = 20/74 (27%), Positives = 33/74 (44%)
Query: 93 LEISGAESGGLGDSSSQL---EPTEQKCSPLQTCSASFSDWFNQNSGTCCPESVGISQFE 149
LE+ E+ L S QL E TE++ L+ + N ++GT + +
Sbjct: 514 LEMLLGETDSLLSSIHQLMEKEQTEKRARELEEELKQNEEQLNDHNGTNTNNNNTTTTTT 573
Query: 150 TPGCSTASSFS-EG 162
T +T++S S EG
Sbjct: 574 TTSTTTSTSLSNEG 587
>POMBASE|SPAC1250.01 [details] [associations]
symbol:snf21 "ATP-dependent DNA helicase Snf21"
species:4896 "Schizosaccharomyces pombe" [GO:0000790 "nuclear
chromatin" evidence=IC] [GO:0000991 "core RNA polymerase II binding
transcription factor activity" evidence=ISO] [GO:0003677 "DNA
binding" evidence=IC] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=ISS] [GO:0005524 "ATP binding" evidence=IC]
[GO:0005634 "nucleus" evidence=IDA] [GO:0006338 "chromatin
remodeling" evidence=ISO] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=IDA] [GO:0016586 "RSC complex"
evidence=IDA] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 PomBase:SPAC1250.01 GO:GO:0005524 EMBL:CU329670
GenomeReviews:CU329670_GR GO:GO:0003677 GO:GO:0006338 GO:GO:0000790
GO:GO:0004003 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0016586 GO:GO:0000991 Gene3D:1.20.920.10
SUPFAM:SSF47370 PROSITE:PS00633 InterPro:IPR018359
InterPro:IPR013999 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 SMART:SM00573 PROSITE:PS51204 HOGENOM:HOG000172362
KO:K11786 EMBL:AB162438 PIR:T37561 RefSeq:NP_594861.1
ProteinModelPortal:Q9UTN6 DIP:DIP-48388N STRING:Q9UTN6
EnsemblFungi:SPAC1250.01.1 GeneID:2542638 KEGG:spo:SPAC1250.01
OMA:WAPSISA OrthoDB:EOG4D565R NextBio:20803687 Uniprot:Q9UTN6
Length = 1199
Score = 102 (41.0 bits), Expect = 2.6e-06, Sum P(3) = 2.6e-06
Identities = 24/100 (24%), Positives = 49/100 (49%)
Query: 902 LAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKR-RWCLSGTPIQNAIDDLYSYFRFLR 960
L+++ W +++DE +KN ++++ + R R L+GTP+QN + +L++ F+
Sbjct: 533 LSRIKWIYMIIDEGHRMKNTQSKLTNTLTTYYSSRYRLILTGTPLQNNLPELWALLNFVL 592
Query: 961 YDPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRR 1000
F KSF P + + +L +++RR
Sbjct: 593 PRIFNSIKSFDEWFNTPFANTGGQDKMELTEEESLLVIRR 632
Score = 90 (36.7 bits), Expect = 2.6e-06, Sum P(3) = 2.6e-06
Identities = 22/51 (43%), Positives = 30/51 (58%)
Query: 659 PDGVLAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 709
P ++ L +Q L WM+ + L+ GILAD+ GLGKTI TI+LI
Sbjct: 409 PSILVGGKLKEYQLRGLQWMISLYNNHLN---GILADEMGLGKTIQTISLI 456
Score = 58 (25.5 bits), Expect = 2.6e-06, Sum P(3) = 2.6e-06
Identities = 20/73 (27%), Positives = 30/73 (41%)
Query: 773 KGRPAAGTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKD---P-CELAKFDV 828
K R LV+ P S L W E S + +VY G + + P + F V
Sbjct: 462 KKRQNGPFLVIVPLSTLTNWTMEFERWAPS---IVKIVYKGPPQVRKALHPQVRHSNFQV 518
Query: 829 VITTYSIVSMEVP 841
++TTY + + P
Sbjct: 519 LLTTYEYIIKDRP 531
>SGD|S000005816 [details] [associations]
symbol:SNF2 "Catalytic subunit of the SWI/SNF chromatin
remodeling complex" species:4932 "Saccharomyces cerevisiae"
[GO:0006261 "DNA-dependent DNA replication" evidence=IMP]
[GO:0016514 "SWI/SNF complex" evidence=IDA;IMP] [GO:0006338
"chromatin remodeling" evidence=IGI;IMP] [GO:0031496 "positive
regulation of mating type switching" evidence=IMP] [GO:0031492
"nucleosomal DNA binding" evidence=IDA] [GO:0042766 "nucleosome
mobilization" evidence=IMP;IDA] [GO:0006302 "double-strand break
repair" evidence=IMP] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA;IDA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IMP;IDA] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IGI;IMP] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0016818 "hydrolase activity, acting on acid
anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0043044 "ATP-dependent chromatin remodeling" evidence=IMP;IDA]
[GO:0044109 "cellular alcohol catabolic process" evidence=IMP]
[GO:0005987 "sucrose catabolic process" evidence=IMP] [GO:0070577
"histone acetyl-lysine binding" evidence=IMP;IDA] [GO:0042148
"strand invasion" evidence=IMP] [GO:0061412 "positive regulation of
transcription from RNA polymerase II promoter in response to amino
acid starvation" evidence=IMP] [GO:0001102 "RNA polymerase II
activating transcription factor binding" evidence=IPI]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
InterPro:IPR014978 InterPro:IPR017956 Pfam:PF00176 Pfam:PF00271
Pfam:PF00439 Pfam:PF08880 PRINTS:PR00503 PROSITE:PS50014
PROSITE:PS51194 SMART:SM00297 SMART:SM00384 SMART:SM00490
SMART:SM00951 SGD:S000005816 GO:GO:0005524 EMBL:BK006948
GO:GO:0006351 GO:GO:0006261 GO:GO:0016514 GO:GO:0006302
GO:GO:0004386 GO:GO:0005987 GO:GO:0042766 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043044
Gene3D:1.20.920.10 SUPFAM:SSF47370 PROSITE:PS00633 GO:GO:0070577
InterPro:IPR018359 GeneTree:ENSGT00550000074659 InterPro:IPR014012
PROSITE:PS51204 EMBL:X89633 GO:GO:0008094 HOGENOM:HOG000172362
GO:GO:0031492 RefSeq:NP_014933.3 GeneID:854465 KEGG:sce:YOR290C
KO:K11786 GO:GO:0061412 GO:GO:0042148 OrthoDB:EOG4D565R EMBL:M61703
EMBL:X57837 EMBL:D90459 EMBL:Z75198 EMBL:Z75199 PIR:S15047
RefSeq:NP_014935.3 ProteinModelPortal:P22082 SMR:P22082
DIP:DIP-1150N IntAct:P22082 MINT:MINT-600461 STRING:P22082
PaxDb:P22082 PeptideAtlas:P22082 EnsemblFungi:YOR290C GeneID:854467
KEGG:sce:YOR292C CYGD:YOR290c OMA:HPNFLSK NextBio:976750
Genevestigator:P22082 GermOnline:YOR290C GO:GO:0044109
GO:GO:0031496 Uniprot:P22082
Length = 1703
Score = 102 (41.0 bits), Expect = 2.6e-06, Sum P(4) = 2.6e-06
Identities = 26/100 (26%), Positives = 49/100 (49%)
Query: 902 LAKVGWFRVVLDEAQSIKNHRTQVARAC-WGLRAKRRWCLSGTPIQNAIDDLYSYFRFLR 960
L+KV W +++DE +KN +++++ A R L+GTP+QN + +L++ F+
Sbjct: 883 LSKVKWVHMIIDEGHRMKNAQSKLSLTLNTHYHADYRLILTGTPLQNNLPELWALLNFVL 942
Query: 961 YDPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRR 1000
F KSF P + + +L +++RR
Sbjct: 943 PKIFNSVKSFDEWFNTPFANTGGQDKIELSEEETLLVIRR 982
Score = 85 (35.0 bits), Expect = 2.6e-06, Sum P(4) = 2.6e-06
Identities = 22/51 (43%), Positives = 30/51 (58%)
Query: 659 PDGVLAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 709
P ++ L +Q L WMV + L+ GILAD+ GLGKTI TI+L+
Sbjct: 759 PSILVGGTLKDYQIKGLQWMVSLFNNHLN---GILADEMGLGKTIQTISLL 806
Score = 63 (27.2 bits), Expect = 2.6e-06, Sum P(4) = 2.6e-06
Identities = 16/60 (26%), Positives = 26/60 (43%)
Query: 781 LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDP-CELAKFDVVITTYSIVSME 839
LV+ P S L W+ E + ++S + K +FDVV+TT+ + E
Sbjct: 820 LVIVPLSTLSNWSSEFAKWAPTLRTISFKGSPNERKAKQAKIRAGEFDVVLTTFEYIIKE 879
Score = 50 (22.7 bits), Expect = 2.6e-06, Sum P(4) = 2.6e-06
Identities = 21/94 (22%), Positives = 37/94 (39%)
Query: 486 SSSRSPIDGRHLSLNLNGSRQYFPYAQPS--TLNKKELDGVKEDM-EAEIKTRSMASHL- 541
S+ +SPI + LN NG P Q S +LN + E + ++H
Sbjct: 111 SAHQSPIMQTQMPLNSNGGNNMLPQRQSSVGSLNATNFSPTPANNGENAAEKPDNSNHNN 170
Query: 542 LKLSPESIQSNSSDCKSHVDDEPDICILEDISQP 575
L L+ +Q + + H + ++ I+ P
Sbjct: 171 LNLNNSELQPQNRSLQEHNIQDSNVMPGSQINSP 204
Score = 45 (20.9 bits), Expect = 8.0e-06, Sum P(4) = 8.0e-06
Identities = 13/39 (33%), Positives = 20/39 (51%)
Query: 354 EDSKNGLPIYGNSLSNITLGDGKRSAQPCTYSHSHSSRT 392
E ++ P N+ SN L G + QP T SH +++ T
Sbjct: 299 EFARRRQPTDQNNQSN--LNGGNNTQQPGTNSHYNNTNT 335
>CGD|CAL0000831 [details] [associations]
symbol:orf19.1734 species:5476 "Candida albicans" [GO:0031011
"Ino80 complex" evidence=IEA] [GO:0042766 "nucleosome mobilization"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0043486
"histone exchange" evidence=IEA] [GO:0006348 "chromatin silencing
at telomere" evidence=IEA] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0016584 "nucleosome
positioning" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0043618 "regulation of transcription from RNA polymerase II
promoter in response to stress" evidence=IEA] [GO:0043140
"ATP-dependent 3'-5' DNA helicase activity" evidence=IEA]
[GO:0016887 "ATPase activity" evidence=IEA] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271
Pfam:PF13892 PROSITE:PS51194 PROSITE:PS51413 SMART:SM00490
CGD:CAL0000831 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0003677 GO:GO:0006281 GO:GO:0006351 GO:GO:0016568
GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 EMBL:AACQ01000298 EMBL:AACQ01000297
RefSeq:XP_710247.1 RefSeq:XP_710254.1 STRING:Q59KI4 GeneID:3648140
GeneID:3648148 KEGG:cal:CaO19.1734 KEGG:cal:CaO19.9302 KO:K11665
Uniprot:Q59KI4
Length = 1387
Score = 122 (48.0 bits), Expect = 2.8e-06, Sum P(3) = 2.8e-06
Identities = 31/106 (29%), Positives = 52/106 (49%)
Query: 904 KVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDP 963
K+ W ++LDEAQ+IK+ + ++ L + R L+GTPIQN++ +L++ F+
Sbjct: 798 KMKWQYMILDEAQAIKSSSSSRWKSLLNLTCRNRLLLTGTPIQNSMQELWALLHFIMPSI 857
Query: 964 FAVYKSFCSMIKVPISKNPVKG-------YKKLQAVLKTIMLRRTK 1002
F + F I + ++L +LK MLRR K
Sbjct: 858 FDSHDEFSDWFAKDIESHAQSNTSLDEQQLRRLHMILKPFMLRRIK 903
Score = 73 (30.8 bits), Expect = 2.8e-06, Sum P(3) = 2.8e-06
Identities = 16/48 (33%), Positives = 28/48 (58%)
Query: 662 VLAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 709
+L L +Q L+W+ ++ GILAD+ GLGKT+ +I+++
Sbjct: 667 MLKCTLKEYQLKGLNWLANLYEQGIN---GILADEMGLGKTVQSISVL 711
Score = 56 (24.8 bits), Expect = 2.8e-06, Sum P(3) = 2.8e-06
Identities = 18/46 (39%), Positives = 22/46 (47%)
Query: 781 LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCELAKF 826
LVV P S L W +E+ V VL Y G++ KD L KF
Sbjct: 725 LVVTPASTLHNWQQEITKFVPE---FKVLPYWGNA--KDRKILRKF 765
>UNIPROTKB|Q9KR83 [details] [associations]
symbol:VC1760 "Helicase, putative" species:243277 "Vibrio
cholerae O1 biovar El Tor str. N16961" [GO:0004386 "helicase
activity" evidence=ISS] [GO:0008152 "metabolic process"
evidence=ISS] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR007560 InterPro:IPR011856 Pfam:PF00176 Pfam:PF00271
Pfam:PF04471 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003677 GenomeReviews:AE003852_GR GO:GO:0090305
InterPro:IPR011335 SUPFAM:SSF52980 GO:GO:0004386 GO:GO:0004519
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0009307
Gene3D:3.40.1350.10 EMBL:AE004253 PIR:H82159 RefSeq:NP_231395.1
ProteinModelPortal:Q9KR83 DNASU:2613766 GeneID:2613766
KEGG:vch:VC1760 PATRIC:20082572 OMA:HWNPAKE ProtClustDB:CLSK874535
Uniprot:Q9KR83
Length = 940
Score = 107 (42.7 bits), Expect = 2.8e-06, Sum P(3) = 2.8e-06
Identities = 35/111 (31%), Positives = 54/111 (48%)
Query: 905 VGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPF 964
+ W VV DEAQ+IKN RA GL+A + +GTP++N++ D +
Sbjct: 411 IDWGIVVFDEAQNIKNPNALQTRAAKGLKADFKLVATGTPVENSLADFWCLMDTACPGHL 470
Query: 965 AVYKSFCSMIKVPISK---NPVKGYK-----KLQAVLKTIMLRRTKGEDCL 1007
Y+ F + PI K + V+ + +L+ + +MLRR K ED L
Sbjct: 471 GSYQEFRARYISPILKAAGDEVEEIRARLGRELRIAVGALMLRRIK-EDNL 520
Score = 87 (35.7 bits), Expect = 2.8e-06, Sum P(3) = 2.8e-06
Identities = 19/43 (44%), Positives = 25/43 (58%)
Query: 670 HQRIALSWMV---QKETSSLHCSGGILADDQGLGKTISTIALI 709
HQ I + W++ QK S SG +LADD GLGKT ++ I
Sbjct: 254 HQDIGVRWILGVEQKSLSDSKVSGALLADDMGLGKTFMALSAI 296
Score = 52 (23.4 bits), Expect = 2.8e-06, Sum P(3) = 2.8e-06
Identities = 11/50 (22%), Positives = 20/50 (40%)
Query: 770 EQAKGRPAAGTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKD 819
+Q G L+V P S+L W +E+ V++ S+ +
Sbjct: 303 QQISGETKKPALIVAPLSLLENWKDEVDKTFKHSPFKDVVILQSSAELNE 352
>TIGR_CMR|VC_1760 [details] [associations]
symbol:VC_1760 "helicase, putative" species:686 "Vibrio
cholerae O1 biovar El Tor" [GO:0004386 "helicase activity"
evidence=ISS] [GO:0008152 "metabolic process" evidence=ISS]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR007560
InterPro:IPR011856 Pfam:PF00176 Pfam:PF00271 Pfam:PF04471
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003677
GenomeReviews:AE003852_GR GO:GO:0090305 InterPro:IPR011335
SUPFAM:SSF52980 GO:GO:0004386 GO:GO:0004519 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0009307 Gene3D:3.40.1350.10
EMBL:AE004253 PIR:H82159 RefSeq:NP_231395.1
ProteinModelPortal:Q9KR83 DNASU:2613766 GeneID:2613766
KEGG:vch:VC1760 PATRIC:20082572 OMA:HWNPAKE ProtClustDB:CLSK874535
Uniprot:Q9KR83
Length = 940
Score = 107 (42.7 bits), Expect = 2.8e-06, Sum P(3) = 2.8e-06
Identities = 35/111 (31%), Positives = 54/111 (48%)
Query: 905 VGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPF 964
+ W VV DEAQ+IKN RA GL+A + +GTP++N++ D +
Sbjct: 411 IDWGIVVFDEAQNIKNPNALQTRAAKGLKADFKLVATGTPVENSLADFWCLMDTACPGHL 470
Query: 965 AVYKSFCSMIKVPISK---NPVKGYK-----KLQAVLKTIMLRRTKGEDCL 1007
Y+ F + PI K + V+ + +L+ + +MLRR K ED L
Sbjct: 471 GSYQEFRARYISPILKAAGDEVEEIRARLGRELRIAVGALMLRRIK-EDNL 520
Score = 87 (35.7 bits), Expect = 2.8e-06, Sum P(3) = 2.8e-06
Identities = 19/43 (44%), Positives = 25/43 (58%)
Query: 670 HQRIALSWMV---QKETSSLHCSGGILADDQGLGKTISTIALI 709
HQ I + W++ QK S SG +LADD GLGKT ++ I
Sbjct: 254 HQDIGVRWILGVEQKSLSDSKVSGALLADDMGLGKTFMALSAI 296
Score = 52 (23.4 bits), Expect = 2.8e-06, Sum P(3) = 2.8e-06
Identities = 11/50 (22%), Positives = 20/50 (40%)
Query: 770 EQAKGRPAAGTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKD 819
+Q G L+V P S+L W +E+ V++ S+ +
Sbjct: 303 QQISGETKKPALIVAPLSLLENWKDEVDKTFKHSPFKDVVILQSSAELNE 352
>TAIR|locus:2160811 [details] [associations]
symbol:CHR24 "chromatin remodeling 24" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA;ISS]
[GO:0004386 "helicase activity" evidence=IEA;ISS] [GO:0005524 "ATP
binding" evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM]
[GO:0046686 "response to cadmium ion" evidence=IEP] [GO:0006270
"DNA replication initiation" evidence=RCA] [GO:0006275 "regulation
of DNA replication" evidence=RCA] [GO:0008283 "cell proliferation"
evidence=RCA] [GO:0009855 "determination of bilateral symmetry"
evidence=RCA] [GO:0009887 "organ morphogenesis" evidence=RCA]
[GO:0010051 "xylem and phloem pattern formation" evidence=RCA]
[GO:0048439 "flower morphogenesis" evidence=RCA] [GO:0048519
"negative regulation of biological process" evidence=RCA]
[GO:0051726 "regulation of cell cycle" evidence=RCA]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0046686 GO:GO:0003677 GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
EMBL:AF462829 EMBL:AY142010 IPI:IPI00526353 RefSeq:NP_201200.2
UniGene:At.28262 ProteinModelPortal:Q8W103 PaxDb:Q8W103
PRIDE:Q8W103 EnsemblPlants:AT5G63950.1 GeneID:836516
KEGG:ath:AT5G63950 TAIR:At5g63950 HOGENOM:HOG000029838
InParanoid:Q8W103 OMA:VIVYRLM PhylomeDB:Q8W103
ProtClustDB:CLSN2690259 Genevestigator:Q8W103 Uniprot:Q8W103
Length = 1090
Score = 105 (42.0 bits), Expect = 3.1e-06, Sum P(4) = 3.1e-06
Identities = 21/52 (40%), Positives = 32/52 (61%)
Query: 907 WFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRF 958
W ++LDE IKN TQ A++ + + R +SGTPIQN + +L++ F F
Sbjct: 509 WDYMILDEGHLIKNPNTQRAKSLLEIPSSHRIIISGTPIQNNLKELWALFNF 560
Score = 94 (38.1 bits), Expect = 3.1e-06, Sum P(4) = 3.1e-06
Identities = 26/78 (33%), Positives = 36/78 (46%)
Query: 632 KSKASDERLILQVAMQGISQPNAEASAPDGVLAVPLLRHQRIALSWMVQKETSSLHCSGG 691
K DER + ++ N + P G +A L HQR L+W+ T GG
Sbjct: 343 KRHGYDERSLEDEGSITLTGLNLSYTLP-GKIATMLYPHQREGLNWLWSLHTQG---KGG 398
Query: 692 ILADDQGLGKTISTIALI 709
IL DD GLGKT+ + +
Sbjct: 399 ILGDDMGLGKTMQICSFL 416
Score = 53 (23.7 bits), Expect = 3.1e-06, Sum P(4) = 3.1e-06
Identities = 18/60 (30%), Positives = 29/60 (48%)
Query: 781 LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCELAKF----DVVITTYSIV 836
LVV P ++L W +EL S+ + Y+G+S +L +++TTY IV
Sbjct: 429 LVVAPKTLLPHWMKELATVGLSQMTRE---YYGTSTKAREYDLHHILQGKGILLTTYDIV 485
Score = 39 (18.8 bits), Expect = 3.1e-06, Sum P(4) = 3.1e-06
Identities = 13/46 (28%), Positives = 23/46 (50%)
Query: 518 KKELDGVKEDMEAEIKTRSMASHLLKLSPESIQSNSSDCKSHVDDE 563
K ++D K D E + S+ S L K SP+ + + ++ S D +
Sbjct: 177 KSQVD--KFDFEDAKSSFSLLSDLSKSSPDVVTTYNAGVNSIKDKQ 220
>SGD|S000001388 [details] [associations]
symbol:STH1 "ATPase component of the RSC chromatin remodeling
complex" species:4932 "Saccharomyces cerevisiae" [GO:0005634
"nucleus" evidence=IEA;IDA] [GO:0007126 "meiosis" evidence=IMP]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IDA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA;IDA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;IMP] [GO:0007049 "cell cycle"
evidence=IEA] [GO:0016568 "chromatin modification" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0070577 "histone
acetyl-lysine binding" evidence=IDA] [GO:0006337 "nucleosome
disassembly" evidence=IDA] [GO:0016584 "nucleosome positioning"
evidence=IMP] [GO:0007010 "cytoskeleton organization"
evidence=IGI;IMP] [GO:0031055 "chromatin remodeling at centromere"
evidence=IMP] [GO:0007059 "chromosome segregation" evidence=IGI]
[GO:0016586 "RSC complex" evidence=IDA] [GO:0043044 "ATP-dependent
chromatin remodeling" evidence=IDA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0000086 "G2/M transition of mitotic cell cycle" evidence=IMP]
[GO:0006368 "transcription elongation from RNA polymerase II
promoter" evidence=IDA] [GO:0006302 "double-strand break repair"
evidence=IMP] [GO:0015616 "DNA translocase activity" evidence=IDA]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 Pfam:PF00439 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00490
SGD:S000001388 GO:GO:0005524 GO:GO:0007126 GO:GO:0000086
GO:GO:0007010 GO:GO:0007059 GO:GO:0000775 GO:GO:0006355
EMBL:BK006942 GO:GO:0006302 GO:GO:0004386 GO:GO:0006368
GO:GO:0006337 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0016586 GO:GO:0043044 GO:GO:0016584
EMBL:DQ115392 Gene3D:1.20.920.10 SUPFAM:SSF47370 PROSITE:PS00633
GO:GO:0070577 InterPro:IPR018359 EMBL:Z46833 InterPro:IPR014012
PROSITE:PS51204 GeneTree:ENSGT00670000098110 HOGENOM:HOG000172362
GO:GO:0015616 GO:GO:0031055 KO:K11786 OrthoDB:EOG4D565R EMBL:D10595
EMBL:M83755 PIR:S49883 RefSeq:NP_012140.1 ProteinModelPortal:P32597
SMR:P32597 DIP:DIP-5889N IntAct:P32597 MINT:MINT-615490
STRING:P32597 PaxDb:P32597 PeptideAtlas:P32597 EnsemblFungi:YIL126W
GeneID:854680 KEGG:sce:YIL126W CYGD:YIL126w OMA:MEDFLRM
NextBio:977286 Genevestigator:P32597 GermOnline:YIL126W
Uniprot:P32597
Length = 1359
Score = 97 (39.2 bits), Expect = 3.2e-06, Sum P(3) = 3.2e-06
Identities = 24/100 (24%), Positives = 49/100 (49%)
Query: 902 LAKVGWFRVVLDEAQSIKNHRTQVA-RACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLR 960
L+K W +++DE +KN +++++ R + R L+GTP+QN + +L++ F+
Sbjct: 586 LSKHDWAHMIIDEGHRMKNAQSKLSFTISHYYRTRNRLILTGTPLQNNLPELWALLNFVL 645
Query: 961 YDPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRR 1000
F K+F P + + +L +++RR
Sbjct: 646 PKIFNSAKTFEDWFNTPFANTGTQEKLELTEEETLLIIRR 685
Score = 87 (35.7 bits), Expect = 3.2e-06, Sum P(3) = 3.2e-06
Identities = 22/51 (43%), Positives = 30/51 (58%)
Query: 659 PDGVLAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 709
P ++ L +Q L WMV + L+ GILAD+ GLGKTI +I+LI
Sbjct: 462 PSILVGGTLKEYQLRGLEWMVSLYNNHLN---GILADEMGLGKTIQSISLI 509
Score = 67 (28.6 bits), Expect = 3.2e-06, Sum P(3) = 3.2e-06
Identities = 16/60 (26%), Positives = 28/60 (46%)
Query: 781 LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCE----LAKFDVVITTYSIV 836
LV+ P S + W E S L+ ++Y G+ + + + FDV++TTY +
Sbjct: 523 LVIVPLSTITNWTLEFEKWAPS---LNTIIYKGTPNQRHSLQHQIRVGNFDVLLTTYEYI 579
>ZFIN|ZDB-GENE-091113-61 [details] [associations]
symbol:si:dkey-76p7.6 "si:dkey-76p7.6" species:7955
"Danio rerio" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0000729 "DNA double-strand break processing" evidence=ISS]
[GO:0035861 "site of double-strand break" evidence=ISS] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=ISS] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0016568 "chromatin modification" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006974 "response to DNA
damage stimulus" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0005694 "chromosome" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR003892
InterPro:IPR009060 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51140
PROSITE:PS51194 SMART:SM00490 ZFIN:ZDB-GENE-091113-61 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0043044 SUPFAM:SSF46934
GO:GO:0000729 GO:GO:0035861 GeneTree:ENSGT00630000089890
EMBL:BX927385 IPI:IPI00901431 Ensembl:ENSDART00000113101
Bgee:E7F1C4 Uniprot:E7F1C4
Length = 954
Score = 90 (36.7 bits), Expect = 3.3e-06, Sum P(4) = 3.3e-06
Identities = 28/100 (28%), Positives = 47/100 (47%)
Query: 911 VLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAVYKS- 969
V DE +KN + R + AK R L+GTP+QN + +L S F+ + F+ S
Sbjct: 558 VFDEGHLLKNMNSLRYRHLMAINAKYRLLLTGTPLQNNLLELMSLLNFIMPNMFSSSTSQ 617
Query: 970 FCSMIKVPISKNPVKGYKK-----LQAVLKTIMLRRTKGE 1004
M + S+ +++ + ++K +LRR K E
Sbjct: 618 IAKMFSMKSSEEQ-SSFERDRITHAKLIMKPFILRRVKSE 656
Score = 87 (35.7 bits), Expect = 3.3e-06, Sum P(4) = 3.3e-06
Identities = 25/82 (30%), Positives = 44/82 (53%)
Query: 630 GMKSKASDERL-ILQVAMQGISQPNAEASAPDGVLAVPLLR-HQRIALSWMVQKETSSLH 687
G+ SK + + ++Q Q + + + P+ + + L+ +Q I L+W+V + L
Sbjct: 390 GLMSKCEEISVKLIQDVTQVMDKGPGSMTQPEILSSTFQLKPYQLIGLNWLVLLHQNKL- 448
Query: 688 CSGGILADDQGLGKTISTIALI 709
GILAD+ GLGKTI I+ +
Sbjct: 449 --SGILADEMGLGKTIQAISFL 468
Score = 64 (27.6 bits), Expect = 3.3e-06, Sum P(4) = 3.3e-06
Identities = 17/61 (27%), Positives = 32/61 (52%)
Query: 781 LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSS------RTKDPCELAKFDVVITTYS 834
L+ P S L W EL S VLVY+GS+ R + ++ +++++++TY+
Sbjct: 481 LITVPASTLDNWVRELNLWCPS---FKVLVYYGSADDRKYMRYEILNQIVEYNIIVSTYN 537
Query: 835 I 835
+
Sbjct: 538 L 538
Score = 48 (22.0 bits), Expect = 3.3e-06, Sum P(4) = 3.3e-06
Identities = 15/52 (28%), Positives = 26/52 (50%)
Query: 527 DMEAEIKTRSMASHLLKLSPESIQSNSSDCKSHVDDEPDICILEDISQPARS 578
D ++EI SM + KL P ++ SS + V DE + +++ +P S
Sbjct: 47 DSDSEISGSSMMP-VRKLRPRKRKAASSADEYSVSDEEEEIVVKTKRRPTHS 97
Score = 47 (21.6 bits), Expect = 4.1e-06, Sum P(4) = 4.1e-06
Identities = 19/67 (28%), Positives = 34/67 (50%)
Query: 11 GEVSAADEFADDQGLSIDMDTLLGILEEEKQPDRVKSSPGD-LSLRNLSQDELVQDVGSH 69
G VSAAD+ ++ S D + +L L+ K P K+ D L + D+ ++ +
Sbjct: 159 GRVSAADDSEEEGQRSKDQERMLRKLQR-KFPHLNKNELRDVLQEHDWLIDDALETLRMF 217
Query: 70 SNLQLQS 76
S+L ++S
Sbjct: 218 SDLVVES 224
>UNIPROTKB|H3BTW3 [details] [associations]
symbol:CHD9 "Chromodomain-helicase-DNA-binding protein 9"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
InterPro:IPR017956 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013
PROSITE:PS51194 SMART:SM00298 SMART:SM00384 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0003677
GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780 EMBL:AC007906
EMBL:AC079416 HGNC:HGNC:25701 Ensembl:ENST00000565803 Bgee:H3BTW3
Uniprot:H3BTW3
Length = 1099
Score = 135 (52.6 bits), Expect = 4.4e-06, Sum P(4) = 4.4e-06
Identities = 35/106 (33%), Positives = 56/106 (52%)
Query: 900 GPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFL 959
G L + W V++DEA +KN ++ + + + L+GTP+QN +++L+S FL
Sbjct: 510 GELNAIEWRCVIIDEAHRLKNKNCKLLEGLKLMNLEHKVLLTGTPLQNTVEELFSLLHFL 569
Query: 960 RYDPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGED 1005
F +F ++ V+ KLQA+LK +MLRR K ED
Sbjct: 570 EPLRFPSESTFMQEFGDLKTEEQVQ---KLQAILKPMMLRRLK-ED 611
Score = 67 (28.6 bits), Expect = 4.4e-06, Sum P(4) = 4.4e-06
Identities = 16/43 (37%), Positives = 25/43 (58%)
Query: 667 LLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 709
L +Q L+W++ + +C ILAD+ GLGKTI +I +
Sbjct: 386 LREYQLEGLNWLLFNWYNRRNC---ILADEMGLGKTIQSITFL 425
Score = 62 (26.9 bits), Expect = 1.3e-05, Sum P(4) = 1.3e-05
Identities = 16/56 (28%), Positives = 26/56 (46%)
Query: 760 GSSAKSFNFVEQAKGRPAAGT-LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGS 814
G + +S F+ + G L++ P S + W E R ++V+VYHGS
Sbjct: 416 GKTIQSITFLYEILLTGIRGPFLIIAPLSTIANWEREFRTWT----DINVVVYHGS 467
Score = 47 (21.6 bits), Expect = 4.4e-06, Sum P(4) = 4.4e-06
Identities = 17/66 (25%), Positives = 31/66 (46%)
Query: 519 KELDGVKEDMEAEIKTRSMASHLL-KLSPESIQSN-SSDCKSHVDDEPDICILEDISQPA 576
K+ D K +++K ++ L+ L + + N SSD S + P + + SQ
Sbjct: 101 KDKDSKKTKTCSKLKEKTKIGKLIITLGKKQKRKNESSDEISDAEQMPQHTLKDQDSQKR 160
Query: 577 RSNQSL 582
RSN+ +
Sbjct: 161 RSNRQI 166
Score = 42 (19.8 bits), Expect = 4.0e-05, Sum P(4) = 4.0e-05
Identities = 13/41 (31%), Positives = 20/41 (48%)
Query: 192 SHIDSRSVDASPSSITENFDERYGHYGASIGNRLGSSVPEG 232
S D+R +D PS+I + D+ + GN+L EG
Sbjct: 356 SRPDTRRLDRPPSNIWKKIDQSRDYKN---GNQLREYQLEG 393
Score = 39 (18.8 bits), Expect = 4.4e-06, Sum P(4) = 4.4e-06
Identities = 8/15 (53%), Positives = 11/15 (73%)
Query: 37 EEEKQPDRVKSSPGD 51
+EEK+ R+KS P D
Sbjct: 88 KEEKKGRRMKSKPKD 102
>TAIR|locus:2051678 [details] [associations]
symbol:ETL1 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA;ISS] [GO:0004386 "helicase activity"
evidence=IEA;ISS] [GO:0005524 "ATP binding" evidence=IEA;ISS]
[GO:0005634 "nucleus" evidence=ISM] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0003677 GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:AC005936 HOGENOM:HOG000172362
KO:K14439 EMBL:AY059857 EMBL:BT002576 IPI:IPI00520453 PIR:H84432
RefSeq:NP_178318.1 UniGene:At.13358 ProteinModelPortal:Q9ZUL5
SMR:Q9ZUL5 IntAct:Q9ZUL5 PaxDb:Q9ZUL5 PRIDE:Q9ZUL5
EnsemblPlants:AT2G02090.1 GeneID:814740 KEGG:ath:AT2G02090
TAIR:At2g02090 InParanoid:Q9ZUL5 OMA:CAKISAD PhylomeDB:Q9ZUL5
ProtClustDB:CLSN2683669 ArrayExpress:Q9ZUL5 Genevestigator:Q9ZUL5
Uniprot:Q9ZUL5
Length = 763
Score = 92 (37.4 bits), Expect = 4.6e-06, Sum P(4) = 4.6e-06
Identities = 25/100 (25%), Positives = 51/100 (51%)
Query: 907 WFRVVLDEAQSIKNHRTQVARACWGL--RAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPF 964
W V++DEA ++K+ + + + A +R L+GTP+QN + +L+S F+ D F
Sbjct: 347 WSCVLMDEAHALKDKNSYRWKNLMSVARNANQRLMLTGTPLQNDLHELWSLLEFMLPDIF 406
Query: 965 AVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGE 1004
+K ++ + +++++L +LRR K +
Sbjct: 407 TTENVD---LKKLLNAEDTELITRMKSILGPFILRRLKSD 443
Score = 89 (36.4 bits), Expect = 4.6e-06, Sum P(4) = 4.6e-06
Identities = 26/72 (36%), Positives = 38/72 (52%)
Query: 781 LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSR---TKDPCELAK------FDVVIT 831
LVVCP SVL W ELR S +VL YHG++R +++ L+K F+V++
Sbjct: 267 LVVCPASVLENWERELRKWCPS---FTVLQYHGAARAAYSRELNSLSKAGKPPPFNVLLV 323
Query: 832 TYSIVSMEVPKQ 843
YS+ +Q
Sbjct: 324 CYSLFERHSEQQ 335
Score = 65 (27.9 bits), Expect = 4.6e-06, Sum P(4) = 4.6e-06
Identities = 15/45 (33%), Positives = 27/45 (60%)
Query: 666 PLLR-HQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 709
P+L+ +Q + +++++ + G ILAD+ GLGKTI I +
Sbjct: 211 PILKPYQLVGVNFLLLLYKKGIE--GAILADEMGLGKTIQAITYL 253
Score = 37 (18.1 bits), Expect = 4.6e-06, Sum P(4) = 4.6e-06
Identities = 18/67 (26%), Positives = 26/67 (38%)
Query: 97 GAESGGLGDSSSQLEPTEQKCSPLQTCSASFSDWFNQNSGTCCPESVGISQFETPGCSTA 156
G GG G + E K LQ C+ +D + GT + S+ ET ST
Sbjct: 136 GGGGGGSGGRRGEDEDVVGKA--LQKCAKISADLRKELYGTSSGVTDRYSEVET---STV 190
Query: 157 SSFSEGD 163
++ D
Sbjct: 191 RIVTQND 197
>POMBASE|SPCP25A2.02c [details] [associations]
symbol:rhp26 "SNF2 family helicase Rhp26" species:4896
"Schizosaccharomyces pombe" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004003 "ATP-dependent DNA helicase activity" evidence=ISM]
[GO:0005524 "ATP binding" evidence=ISM] [GO:0005634 "nucleus"
evidence=ISO;IDA] [GO:0005829 "cytosol" evidence=IDA] [GO:0006283
"transcription-coupled nucleotide-excision repair" evidence=IMP]
[GO:0008094 "DNA-dependent ATPase activity" evidence=ISM]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 PomBase:SPCP25A2.02c GO:GO:0005829
GO:GO:0005524 GO:GO:0005634 EMBL:CU329672 GenomeReviews:CU329672_GR
GO:GO:0003677 GO:GO:0004003 HSSP:Q97XQ5 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006283
HOGENOM:HOG000170952 KO:K10841 OrthoDB:EOG44TSGZ EMBL:AB022912
PIR:T50449 RefSeq:NP_588091.1 ProteinModelPortal:Q9UR24
STRING:Q9UR24 EnsemblFungi:SPCP25A2.02c.1 GeneID:2539473
KEGG:spo:SPCP25A2.02c NextBio:20800635 Uniprot:Q9UR24
Length = 973
Score = 110 (43.8 bits), Expect = 4.9e-06, Sum P(3) = 4.9e-06
Identities = 26/80 (32%), Positives = 42/80 (52%)
Query: 907 WFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAV 966
W VLDE I+N ++++ +C +R R LSGTPIQN + +L++ F F+
Sbjct: 435 WGYCVLDEGHKIRNPDSEISISCKQIRTVNRIILSGTPIQNNLTELWNLFDFVFPGRLGT 494
Query: 967 YKSFCSMIKVPISKNPVKGY 986
F + +PI+ + GY
Sbjct: 495 LPVFQNQFALPIN---IGGY 511
Score = 75 (31.5 bits), Expect = 4.9e-06, Sum P(3) = 4.9e-06
Identities = 19/69 (27%), Positives = 35/69 (50%)
Query: 649 ISQPNAEASAPDGVLAVP------LLRHQRIALSWMVQKETSSLHC--SGGILADDQGLG 700
+ P+ + +G +P L R+Q + W+ + L+C +GGI+ D+ GLG
Sbjct: 253 LPHPSKKGQTFEGGFTIPGDIRPHLFRYQVTCVQWLWE-----LYCQEAGGIIGDEMGLG 307
Query: 701 KTISTIALI 709
KTI ++ +
Sbjct: 308 KTIQIVSFL 316
Score = 59 (25.8 bits), Expect = 4.9e-06, Sum P(3) = 4.9e-06
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 781 LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGS 814
L+VCP ++++QW E T L V+V H +
Sbjct: 330 LIVCPATLMKQWVNEFH---TWWAPLRVVVLHAT 360
WARNING: HSPs involving 124 database sequences were not reported due to the
limiting value of parameter B = 250.
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.314 0.132 0.388 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 1009 978 0.00097 122 3 11 23 0.45 34
38 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 374
No. of states in DFA: 626 (67 KB)
Total size of DFA: 464 KB (2219 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 93.21u 0.26s 93.47t Elapsed: 00:00:04
Total cpu time: 93.26u 0.26s 93.52t Elapsed: 00:00:04
Start: Tue May 21 02:00:13 2013 End: Tue May 21 02:00:17 2013
WARNINGS ISSUED: 2