BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 001825
(1009 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5NC05|TTF2_MOUSE Transcription termination factor 2 OS=Mus musculus GN=Ttf2 PE=1 SV=2
Length = 1138
Score = 169 bits (428), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 119/378 (31%), Positives = 188/378 (49%), Gaps = 87/378 (23%)
Query: 625 LTGLGGMKSKASDERLILQVAMQGISQPNAEASAPDGVLAVPLLRHQRIALSWMVQKETS 684
L + + S+A DE L +++ A A P G L VPLL HQ+ AL+W++ +E
Sbjct: 508 LYNVWKITSEAIDE---LHRSLKSCPGETAVAEDPAG-LKVPLLLHQKQALAWLLWRE-- 561
Query: 685 SLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGIQVNGL 744
S GGILADD GLGKT++ IALIL ++ + + + +R L + D+ +
Sbjct: 562 SQKPQGGILADDMGLGKTLTMIALILTKK--NQQKSKEKERSEPVTWLSKNDSSV----- 614
Query: 745 DLVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTSVLRQWAEELRNKVTSKG 804
F ++GTL+VCP S++ W E+ +VTS
Sbjct: 615 -----------------------FT-------SSGTLIVCPASLIHHWKNEVEKRVTS-N 643
Query: 805 SLSVLVYHGSSRTKDPCELAKFDVVITTYSIVSMEVPKQPLGDKEDEEEKMKIEGEDLPP 864
L + +YHG +R++ L+ +D+VITTYS+++ E+P K EGE
Sbjct: 644 RLRIYLYHGPNRSRHAKVLSTYDIVITTYSLLAKEIPT------------TKQEGEV--- 688
Query: 865 MYCSSSKKRKCPPSSDRKGSKQKKGPDGLLLDIVAGPLAKVGWFRVVLDEAQSIKNHRTQ 924
P ++ L ++ + PL +V W R++LDEA ++KN R Q
Sbjct: 689 ------------PGAN------------LSVEGTSAPLLQVVWARIILDEAHNVKNPRVQ 724
Query: 925 VARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAVYKSFCSMIKVPISKNPVK 984
+ A L+A+ RW ++GTPIQN + D+YS +FLR PF + S+ K + +K
Sbjct: 725 TSIAVCKLQAQARWAVTGTPIQNNLLDMYSLMKFLRCSPFDEF----SLWKSQVDNGSMK 780
Query: 985 GYKKLQAVLKTIMLRRTK 1002
G ++L + K+++LRRTK
Sbjct: 781 GGERLSILTKSLLLRRTK 798
>sp|Q9UNY4|TTF2_HUMAN Transcription termination factor 2 OS=Homo sapiens GN=TTF2 PE=1 SV=2
Length = 1162
Score = 160 bits (404), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 110/349 (31%), Positives = 171/349 (48%), Gaps = 84/349 (24%)
Query: 656 ASAPDGVLAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKERPP 715
A P G L VPLL HQ+ AL+W++ +E+ GGILADD GLGKT++ IALIL ++
Sbjct: 560 AEDPAG-LKVPLLLHQKQALAWLLWRESQK--PQGGILADDMGLGKTLTMIALILTQKNQ 616
Query: 716 SFRTEDDNKRQLETLNLDEEDNGIQVNGLDLVKQESDYCRVVPNGSSAKSFNFVEQAKGR 775
+ E + L L+ D D C +F
Sbjct: 617 EKKEEKEKSTALTWLSKD------------------DSC------------DFT------ 640
Query: 776 PAAGTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCELAKFDVVITTYSI 835
+ GTL++CP S++ W E+ +V S L V +YHG +R L+ +D+VITTYS+
Sbjct: 641 -SHGTLIICPASLIHHWKNEVEKRVNS-NKLRVYLYHGPNRDSRARVLSTYDIVITTYSL 698
Query: 836 VSMEVPKQPLGDKEDEEEKMKIEGEDLPPMYCSSSKKRKCPPSSDRKGSKQKKGPDGLLL 895
V+ E+P +K++ E I G +L +
Sbjct: 699 VAKEIPT----NKQEAE----IPGANLN-------------------------------V 719
Query: 896 DIVAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSY 955
+ + PL ++ W R++LDEA ++KN R Q + A L+A RW ++GTPIQN + D+YS
Sbjct: 720 EGTSTPLLRIAWARIILDEAHNVKNPRVQTSIAVCKLQACARWAVTGTPIQNNLLDMYSL 779
Query: 956 FRFLRYDPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGE 1004
+FLR PF + ++ + + KG ++L + K+++LRRTK +
Sbjct: 780 LKFLRCSPFDEF----NLWRSQVDNGSKKGGERLSILTKSLLLRRTKDQ 824
>sp|O60177|YG42_SCHPO Uncharacterized ATP-dependent helicase C23E6.02
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPBC23E6.02 PE=3 SV=1
Length = 1040
Score = 158 bits (399), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 106/363 (29%), Positives = 159/363 (43%), Gaps = 108/363 (29%)
Query: 647 QGISQPNAEASAPDGVLAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTI 706
Q ++ P P G++ L+ HQ+ L W+ + E SS GGILADD GLGKT+ +
Sbjct: 371 QLVNDPTIREGTPAGLIPT-LMEHQKEGLMWLKRLEESS--KKGGILADDMGLGKTVQAL 427
Query: 707 ALILKERPPSFRTEDDNKRQLETLNLDEEDNGIQVNGLDLVKQESDYCRVVPNGSSAKSF 766
AL++ RP P S K+
Sbjct: 428 ALLVT-RP-------------------------------------------PESKSVKT- 442
Query: 767 NFVEQAKGRPAAGTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCE-LAK 825
TL++ P S+L+QW E+ K+ +V ++HGSS+ E L
Sbjct: 443 -------------TLIITPVSLLQQWHNEILTKIAPSHRPTVYIHHGSSKKHKIAEQLMS 489
Query: 826 FDVVITTYSIVSMEVPKQPLGDKEDEEEKMKIEGEDLPPMYCSSSKKRKCPPSSDRKGSK 885
+D+V+TTY++++ E + DK E+ + E LP
Sbjct: 490 YDIVLTTYNVIAYEFKNKMAYDKSIEDNAPIKKFEHLP---------------------- 527
Query: 886 QKKGPDGLLLDIVAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPI 945
+ W+RV+LDEAQ+IKN T AR C L + RWCLSGTP+
Sbjct: 528 ----------------FFEAEWYRVILDEAQTIKNRNTLAARGCCLLESTYRWCLSGTPM 571
Query: 946 QNAIDDLYSYFRFLRYDPFAVYKSFCSMIKVPISKN-----PVKGYKKLQAVLKTIMLRR 1000
QN +++ YS +FLR P++ + SF +P+S N P+K ++ L LK ++LRR
Sbjct: 572 QNGVEEFYSLIKFLRIKPYSDWSSFSKDFTIPLSSNINTSAPMKRFRGL---LKAVLLRR 628
Query: 1001 TKG 1003
TK
Sbjct: 629 TKN 631
>sp|Q9FNI6|SM3L2_ARATH Putative SWI/SNF-related matrix-associated actin-dependent regulator
of chromatin subfamily A member 3-like 2 OS=Arabidopsis
thaliana GN=At5g22750 PE=2 SV=1
Length = 1029
Score = 157 bits (396), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 104/317 (32%), Positives = 151/317 (47%), Gaps = 72/317 (22%)
Query: 690 GGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGIQVNGLDLVKQ 749
GGILAD GLGKT+ TI+L+L + T L + E + + + +D +
Sbjct: 414 GGILADAMGLGKTVMTISLLLAHSWKAASTG--------FLCPNYEGDKVISSSVDDLTS 465
Query: 750 ESDYCRVVPNGSSAKSFNF----VEQAKGRPAAGTLVVCPTSVLRQWAEELRNKVTSKGS 805
P + K F +EQ G L+VCP ++L QW E+ GS
Sbjct: 466 --------PPVKATKFLGFDKRLLEQKSVLQNGGNLIVCPMTLLGQWKTEIEMH-AKPGS 516
Query: 806 LSVLVYHGSSRTKDPCELAKFDVVITTYSIVSMEVPKQPLGDKEDEEEKMKIEGEDLPPM 865
LSV V++G SR KD L++ DVVITTY +++ E ++ D E
Sbjct: 517 LSVYVHYGQSRPKDAKLLSQSDVVITTYGVLTSEFSQENSADHEG--------------- 561
Query: 866 YCSSSKKRKCPPSSDRKGSKQKKGPDGLLLDIVAGPLAKVGWFRVVLDEAQSIKNHRTQV 925
+ V WFR+VLDEA +IKN ++Q+
Sbjct: 562 ------------------------------------IYAVRWFRIVLDEAHTIKNSKSQI 585
Query: 926 ARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAVYKSFCSMIKVPISKNPVKG 985
+ A L A RRWCL+GTPIQN ++DLYS RFLR +P+ + + +++ P + +G
Sbjct: 586 SLAAAALVADRRWCLTGTPIQNNLEDLYSLLRFLRIEPWGTWAWWNKLVQKPFEEGDERG 645
Query: 986 YKKLQAVLKTIMLRRTK 1002
K +Q++LK IMLRRTK
Sbjct: 646 LKLVQSILKPIMLRRTK 662
>sp|O13762|YF2C_SCHPO Uncharacterized ATP-dependent helicase C17A2.12
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPAC17A2.12 PE=3 SV=1
Length = 897
Score = 145 bits (365), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 107/345 (31%), Positives = 146/345 (42%), Gaps = 105/345 (30%)
Query: 663 LAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDD 722
L V LL HQ +WM E SS C GG++ADD GLGKTI
Sbjct: 246 LLVSLLPHQVEGHAWMESMEQSS-KC-GGVMADDMGLGKTI------------------- 284
Query: 723 NKRQLETLNLDEEDNGIQVNGLDLVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLV 782
Q L L ++ D R L+
Sbjct: 285 -----------------QTIALLLTQKSQDPLR----------------------KTNLI 305
Query: 783 VCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTK-DPCELAKFDVVITTYSIVSMEVP 841
V ++L QWAEEL KV LSV ++HGS++ D EL+++DVV+TTYS+++ E+
Sbjct: 306 VVSVALLHQWAEELSTKVHPSKKLSVYIHHGSTKKNLDSYELSQYDVVLTTYSMLAYEM- 364
Query: 842 KQPLGDKEDEEEKMKIEGEDLPPMYCSSSKKRKCPPSSDRKGSKQKKGPDGLLLDIVAGP 901
K+++ PP CS
Sbjct: 365 ------KQNDAFNNNNPATATPPPACS--------------------------------- 385
Query: 902 LAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRY 961
L + W+R+VLDEA +I+N T A+ C L AK RWCLSGTPIQN ID+ YS +FLR
Sbjct: 386 LLETSWYRIVLDEAHTIRNRDTLAAKCCVKLDAKYRWCLSGTPIQNHIDEFYSLLKFLRI 445
Query: 962 DPFAVYKSFCSMIKVPISKNPV----KGYKKLQAVLKTIMLRRTK 1002
P+ V+ F I P+ K+L+ +L + + RRTK
Sbjct: 446 KPYCVWSLFAKDISRPLKSYRADIVEAALKRLRILLASTVFRRTK 490
>sp|Q4WVM1|RAD5_ASPFU DNA repair protein rad5 OS=Neosartorya fumigata (strain ATCC MYA-4609
/ Af293 / CBS 101355 / FGSC A1100) GN=rad5 PE=3 SV=2
Length = 1245
Score = 139 bits (351), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 100/323 (30%), Positives = 152/323 (47%), Gaps = 91/323 (28%)
Query: 687 HCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGIQVNGLDL 746
HC GGILAD+ GLGKTI ++LI R N+ G + +L
Sbjct: 556 HCLGGILADEMGLGKTIEMLSLIHSHR-----------------NVSPSRQGPS-SSTEL 597
Query: 747 VKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTSVLRQWAEELRNKVTSKGSL 806
V+ S ++P ++ TLVV PTS+L QW E K + +G++
Sbjct: 598 VRMPSSSSAILPAPNT-----------------TLVVAPTSLLSQWESEAM-KASEQGTM 639
Query: 807 SVLVYHGSSRTKDPCEL------AKFDVVITTYSIVSMEVPKQPLGDKEDEEEKMKIEGE 860
VL+Y+G ++ + EL A +++IT+Y +V E +
Sbjct: 640 KVLMYYGVDKSTNLQELCSAGNPAAPNIIITSYGVVLSESRQLA---------------- 683
Query: 861 DLPPMYCSSSKKRKCPPSSDRKGSKQKKGPDGLLLDIVAGPLAKVGWFRVVLDEAQSIKN 920
M+ S+++ G L V +FRV+LDEA IKN
Sbjct: 684 ----MFNSNTQ----------------------------GGLFSVDFFRVILDEAHVIKN 711
Query: 921 HRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAVYKSFCSMIKVPI-S 979
R++ ARAC+ LRA RW L+GTPI N ++DL+S RFL+ +P+ + + + I VP S
Sbjct: 712 RRSKTARACYELRATHRWVLTGTPIVNRLEDLFSLVRFLQVEPWNNFSFWKTFITVPFES 771
Query: 980 KNPVKGYKKLQAVLKTIMLRRTK 1002
K+ V+ +Q VL+ ++LRRTK
Sbjct: 772 KDYVRALNVVQTVLEPLVLRRTK 794
>sp|P0CQ67|RAD5_CRYNB DNA repair protein RAD5 OS=Cryptococcus neoformans var. neoformans
serotype D (strain B-3501A) GN=RAD5 PE=3 SV=1
Length = 1198
Score = 133 bits (335), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 102/329 (31%), Positives = 150/329 (45%), Gaps = 70/329 (21%)
Query: 683 TSSLHCSGGILADDQGLGKTISTIALIL--KERPPSFRTEDDNKRQLETLNLDEE--DNG 738
TS GGILAD G+GKT +LI +E P+ E + +E +DEE
Sbjct: 510 TSQNLSRGGILADAMGMGKTCMMASLIHTNREEKPAGNLESQTRDGVEG-EIDEEPASKR 568
Query: 739 IQVNGLDLVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTSVLRQWAEELRN 798
I+ + L S+ R VP +SF P A TLVVCP S+ QW +ELR
Sbjct: 569 IKFKQVTL----SNQWRAVPTAPKVESF---------PRA-TLVVCPVSLAAQWHDELR- 613
Query: 799 KVTSKGSLSVLVYHGSSRTKDPCELA-----KFDVVITTYSIVSMEVPKQPLGDKEDEEE 853
K++ +GS++ V++G R LA + DV++T+Y ++ E K
Sbjct: 614 KMSQQGSINSYVWYGGDRVDIEALLAGDGKERVDVIVTSYGTLTSEYQKW---------- 663
Query: 854 KMKIEGEDLPPMYCSSSKKRKCPPSSDRKGSKQKKGPDGLLLDIVAGPLAKVGWFRVVLD 913
+ +D P + G L + R+VLD
Sbjct: 664 ---LRTKDRP--------------------------------NYEGGSLYDHEFLRIVLD 688
Query: 914 EAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAVYKSFCSM 973
EA +I+N V++AC+ L+ +RRW L+GTPI N ++DLYS FLR P+ Y F S
Sbjct: 689 EAHNIRNRLAMVSKACYELKGQRRWALTGTPIVNRLEDLYSLLHFLRITPWGNYSFFRSF 748
Query: 974 IKVPISKNPVKGYKKLQAVLKTIMLRRTK 1002
+ VP K +Q +L++ +LRR K
Sbjct: 749 VTVPFLNQDHKALNVVQYILESCLLRREK 777
>sp|P0CQ66|RAD5_CRYNJ DNA repair protein RAD5 OS=Cryptococcus neoformans var. neoformans
serotype D (strain JEC21 / ATCC MYA-565) GN=RAD5 PE=3
SV=1
Length = 1198
Score = 133 bits (335), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 102/329 (31%), Positives = 150/329 (45%), Gaps = 70/329 (21%)
Query: 683 TSSLHCSGGILADDQGLGKTISTIALIL--KERPPSFRTEDDNKRQLETLNLDEE--DNG 738
TS GGILAD G+GKT +LI +E P+ E + +E +DEE
Sbjct: 510 TSQNLSRGGILADAMGMGKTCMMASLIHTNREEKPAGNLESQTRDGVEG-EIDEEPASKR 568
Query: 739 IQVNGLDLVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTSVLRQWAEELRN 798
I+ + L S+ R VP +SF P A TLVVCP S+ QW +ELR
Sbjct: 569 IKFKQVTL----SNQWRAVPTAPKVESF---------PRA-TLVVCPVSLAAQWHDELR- 613
Query: 799 KVTSKGSLSVLVYHGSSRTKDPCELA-----KFDVVITTYSIVSMEVPKQPLGDKEDEEE 853
K++ +GS++ V++G R LA + DV++T+Y ++ E K
Sbjct: 614 KMSQQGSINSYVWYGGDRVDIEALLAGDGKERVDVIVTSYGTLTSEYQKW---------- 663
Query: 854 KMKIEGEDLPPMYCSSSKKRKCPPSSDRKGSKQKKGPDGLLLDIVAGPLAKVGWFRVVLD 913
+ +D P + G L + R+VLD
Sbjct: 664 ---LRTKDRP--------------------------------NYEGGSLYDHEFLRIVLD 688
Query: 914 EAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAVYKSFCSM 973
EA +I+N V++AC+ L+ +RRW L+GTPI N ++DLYS FLR P+ Y F S
Sbjct: 689 EAHNIRNRLAMVSKACYELKGQRRWALTGTPIVNRLEDLYSLLHFLRITPWGNYSFFRSF 748
Query: 974 IKVPISKNPVKGYKKLQAVLKTIMLRRTK 1002
+ VP K +Q +L++ +LRR K
Sbjct: 749 VTVPFLNQDHKALNVVQYILESCLLRREK 777
>sp|Q10332|YBMA_SCHPO Uncharacterized ATP-dependent helicase C582.10c
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPBC582.10c PE=1 SV=1
Length = 830
Score = 133 bits (335), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 107/344 (31%), Positives = 149/344 (43%), Gaps = 102/344 (29%)
Query: 663 LAVPLLRHQRIALSWMVQKET-SSLHCSGGILADDQGLGKTISTIALILKERPPSFRTED 721
+ + LL HQ L+W+ +ET S SGGILADD GLGKTI IALIL P
Sbjct: 229 MHIRLLDHQVQGLTWLKSRETVSKSSASGGILADDMGLGKTIQMIALILSHPLPK----- 283
Query: 722 DNKRQLETLNLDEEDNGIQVNGLDLVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTL 781
K +++ + V L L+KQ
Sbjct: 284 -KKHSIKS--------TLVVAPLSLIKQ-------------------------------- 302
Query: 782 VVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCELAKFDVVITTYSIVSMEVP 841
W E V +K L+ +VYHG+SR K + ++DVVITTY I+ E
Sbjct: 303 ----------WESE----VQTKSKLTAIVYHGASRYKLLKVIHEYDVVITTYQILVSE-- 346
Query: 842 KQPLGDKEDEEEKMKIEGEDLPPMYCSSSKKRKCPPSSDRKGSKQKKGPDGLLLDIVAGP 901
+ S + S S +KK P
Sbjct: 347 ------------------------WVSHNTTGTDGKSPTEAKSYEKKKPS---------- 372
Query: 902 LAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRY 961
L W+R++LDEA +IKN ++ A AC L+ RWCL+GTP+QN +D+LYS +FL
Sbjct: 373 LFAFYWWRIILDEAHTIKNKSSKSALACCALQGINRWCLTGTPLQNNVDELYSLVKFLHI 432
Query: 962 DPFAVYKSFCSMIKVPI---SKNPVKGYKKLQAVLKTIMLRRTK 1002
+PF + I +P+ +N V +K+L+ +L IMLRRTK
Sbjct: 433 NPFNDQSVWKDQISLPLCQGEENLV--FKRLRMLLSVIMLRRTK 474
>sp|Q6PCN7|HLTF_MOUSE Helicase-like transcription factor OS=Mus musculus GN=Hltf PE=1 SV=1
Length = 1003
Score = 127 bits (318), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 70/229 (30%), Positives = 109/229 (47%), Gaps = 54/229 (23%)
Query: 774 GRPAAGTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCELAKFDVVITTY 833
G TL++CP SVL W ++ V S+ L+ VY+G R +D L+K D+++TTY
Sbjct: 466 GERTRATLIICPLSVLSNWIDQFGQHVKSEVHLNFYVYYGPDRIRDSAWLSKQDIILTTY 525
Query: 834 SIVSMEVPKQPLGDKEDEEEKMKIEGEDLPPMYCSSSKKRKCPPSSDRKGSKQKKGPDGL 893
+I++ + G K+D
Sbjct: 526 NILTHDY-----GTKDD------------------------------------------- 537
Query: 894 LLDIVAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLY 953
PL + W RV+LDE +I+N Q +A L A+RRW L+GTPIQN++ DL+
Sbjct: 538 ------SPLHSIKWLRVILDEGHAIRNPNAQQTKAVLELEAERRWVLTGTPIQNSLKDLW 591
Query: 954 SYFRFLRYDPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTK 1002
S FL+ PF + + +I+ P++ G ++LQ+++K I LRRTK
Sbjct: 592 SLLSFLKLKPFIDREWWYRIIQRPVTTGDEGGLRRLQSLIKNITLRRTK 640
Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 37/78 (47%), Gaps = 26/78 (33%)
Query: 659 PDGVLAVPLLRHQRIALSWMVQKETSSL--------------------------HCSGGI 692
P + PLL HQ+ AL+WM+ +E S + GGI
Sbjct: 232 PAEAIETPLLPHQKQALAWMIARENSKELPPFWEQRNDLYYNTITNFSVKERPENVHGGI 291
Query: 693 LADDQGLGKTISTIALIL 710
LADD GLGKT++ IA+IL
Sbjct: 292 LADDMGLGKTLTAIAVIL 309
>sp|Q5BHD6|RAD5_EMENI DNA repair protein rad5 OS=Emericella nidulans (strain FGSC A4 / ATCC
38163 / CBS 112.46 / NRRL 194 / M139) GN=rad5 PE=3 SV=1
Length = 1202
Score = 126 bits (317), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 99/325 (30%), Positives = 144/325 (44%), Gaps = 98/325 (30%)
Query: 687 HCSGGILADDQGLGKTISTIALILKER--PPSFRTEDDNKRQLETLNLDEEDNGIQVNGL 744
HC GGILAD+ GLGKTI ++L+ R PP+ + L L + V+G
Sbjct: 509 HCLGGILADEMGLGKTIEMLSLVHSHRNLPPT--------QSLGNLT------RLPVSG- 553
Query: 745 DLVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTSVLRQWAEELRNKVTSKG 804
VVP + TLVV P S+L QW E K + G
Sbjct: 554 -----------VVPAPYT-----------------TLVVAPMSLLAQWEGEAL-KASRNG 584
Query: 805 SLSVLVYHGSSRTKDPCEL------AKFDVVITTYSIVSMEVPKQPLGDKEDEEEKMKIE 858
S+ VL+Y+G+ + + E+ A ++++T+Y +V E +
Sbjct: 585 SMKVLMYYGNEKNVNLREMCSAGNAAAPNMILTSYGVVM----------SEHRTHQALAP 634
Query: 859 GEDLPPMYCSSSKKRKCPPSSDRKGSKQKKGPDGLLLDIVAGPLAKVGWFRVVLDEAQSI 918
G P G L V +FRV+LDEA I
Sbjct: 635 GTSWTP-----------------------------------GNLFSVDFFRVILDEAHII 659
Query: 919 KNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAVYKSFCSMIKVPI 978
KN R++ ARAC+ L+A RW L+GTPI N ++DL+S RFLR +P+ + + + I P
Sbjct: 660 KNRRSKTARACYDLKATHRWVLTGTPIVNRLEDLFSLVRFLRVEPWNNFSFWKTFITAPF 719
Query: 979 -SKNPVKGYKKLQAVLKTIMLRRTK 1002
SK V+ +Q VL+ ++LRRTK
Sbjct: 720 ESKEVVRAISVVQTVLEPLVLRRTK 744
>sp|Q7S1P9|RAD5_NEUCR DNA repair protein rad-5 OS=Neurospora crassa (strain ATCC 24698 /
74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=rad-5
PE=3 SV=2
Length = 1222
Score = 126 bits (317), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 103/324 (31%), Positives = 150/324 (46%), Gaps = 85/324 (26%)
Query: 687 HCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGIQVNGLDL 746
HC GGILAD+ GLGKTI ++LI S R+E K + E VN L
Sbjct: 573 HCLGGILADEMGLGKTIQMLSLIH-----SHRSEVAIKAR--------EAGPTSVNNLPR 619
Query: 747 VKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTSVLRQWAEELRNKVTSKGSL 806
+ P S K+ P TLVV P S+L QW E N + +G+
Sbjct: 620 L----------PTVSGQKT------TIDAPCT-TLVVAPMSLLAQWQSEAEN-ASKEGTF 661
Query: 807 SVLVYHGSSRTKDP----CELAKF---DVVITTYSIVSMEVPKQPLGDKEDEEEKMKIEG 859
++Y+G+ + D CE DV+IT+Y +V E + L K
Sbjct: 662 KTMMYYGAEKNVDLVTMCCEANAANAPDVIITSYGVVLSEFTQ--LATK----------- 708
Query: 860 EDLPPMYCSSSKKRKCPPSSDRKGSKQKKGPDGLLLDIVAGPLAKVGWFRVVLDEAQSIK 919
+ DR S+ GL + +FRV+LDEA +IK
Sbjct: 709 ------------------NGDRLSSR------GLF---------SLNFFRVILDEAHNIK 735
Query: 920 NHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAVYKSFCSMIKVPI- 978
N + + +RAC+ + A+ RW L+GTPI N ++DL+S RFLR +P+ + + + I VP
Sbjct: 736 NRQAKTSRACYEIAAEHRWVLTGTPIVNRLEDLFSLVRFLRVEPWNNFSFWRTFITVPFE 795
Query: 979 SKNPVKGYKKLQAVLKTIMLRRTK 1002
SKN V+ +Q VL+ +++RRTK
Sbjct: 796 SKNFVRALDVVQTVLEPLVMRRTK 819
>sp|Q4PGG5|RAD5_USTMA DNA repair protein RAD5 OS=Ustilago maydis (strain 521 / FGSC 9021)
GN=RAD5 PE=3 SV=1
Length = 1387
Score = 125 bits (315), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 95/316 (30%), Positives = 147/316 (46%), Gaps = 51/316 (16%)
Query: 690 GGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLN-LDEEDNGIQVNGLDLVK 748
GGILAD+ GLGKTI +L+ R T D + +N +D + + K
Sbjct: 653 GGILADEMGLGKTIMVASLLHANR-----TSDPGEESEGEINAVDAAEGDVSTKRKGSAK 707
Query: 749 QESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTSVLRQWAEELRNKVTSKGSLSV 808
Q S + SS + +A +LVV P S++ QW +EL + ++ GSL+
Sbjct: 708 QTSLASAFAASTSSVDQRKALLKASVSKGKASLVVAPMSLIGQWRDEL-IRASAPGSLTP 766
Query: 809 LVYHGSSRTKDPCEL--AKFDVVITTYSIVSMEVPKQPLGDKEDEEEKMKIEGEDLPPMY 866
++Y+ ++ +L K DVVIT+Y + E + ++G
Sbjct: 767 VLYYADTKGDLLAQLESGKVDVVITSYGTLVTEY-------------RRFLDGGG----- 808
Query: 867 CSSSKKRKCPPSSDRKGSKQKKGPDGLLLDIVAGPLAKVGWFRVVLDEAQSIKNHRTQVA 926
+S+R S V+ PL + W RV+LDEA +IKN T A
Sbjct: 809 -----------ASNRHLS-------------VSAPLYCIDWLRVILDEAHNIKNRSTMNA 844
Query: 927 RACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAVYKSFCSMIKVPISKNPVKGY 986
RAC L ++RRW L+GTPI N + DL+S +FLR +P+ + F S + P K
Sbjct: 845 RACCDLVSRRRWALTGTPIINRLTDLFSLLKFLRVEPWGDFSFFNSFVCKPFQAKSTKAL 904
Query: 987 KKLQAVLKTIMLRRTK 1002
+Q +L++++LRR K
Sbjct: 905 DVVQVILESVLLRREK 920
>sp|P31244|RAD16_YEAST DNA repair protein RAD16 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=RAD16 PE=1 SV=1
Length = 790
Score = 119 bits (299), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 83/264 (31%), Positives = 118/264 (44%), Gaps = 86/264 (32%)
Query: 780 TLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCELAKFDVVITTYSIVSME 839
+LVV PT L QW E+ +KG L + +YHG+SRT D +L +DVV+TTY+++
Sbjct: 233 SLVVAPTVALMQWKNEIEQH--TKGQLKIYIYHGASRTTDIKDLQGYDVVLTTYAVLESV 290
Query: 840 VPKQPLGDKEDEEEKMKIEGEDLPPMYCSSSKKRKCPPSSDRKGSKQKKGPDGLLLDIVA 899
KQ G R+ + K P
Sbjct: 291 FRKQNYGF---------------------------------RRKNGLFKQP--------- 308
Query: 900 GPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFL 959
L + ++RV+LDEA +IK+ ++ ARA L+ ++RWCLSGTP+QN I ++YS RFL
Sbjct: 309 SVLHNIDFYRVILDEAHNIKDRQSNTARAVNNLKTQKRWCLSGTPLQNRIGEMYSLIRFL 368
Query: 960 RYDPFAVYKSFCS----------------------------------MIKVPISKNPVKG 985
+PF Y FC+ M+K I K V+G
Sbjct: 369 NINPFTKY--FCTKCDCASKDWKFTDRMHCDHCSHVIMQHTNFFNHFMLK-NIQKFGVEG 425
Query: 986 -----YKKLQAVLKTIMLRRTKGE 1004
+ +Q +LK IMLRRTK E
Sbjct: 426 PGLESFNNIQTLLKNIMLRRTKVE 449
Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 37/57 (64%), Gaps = 3/57 (5%)
Query: 656 ASAPDGVLAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKE 712
+ PDG + + LL Q L W++ +E S +GG+LAD+ G+GKTI TIAL++ +
Sbjct: 174 SKQPDG-MTIKLLPFQLEGLHWLISQEESIY--AGGVLADEMGMGKTIQTIALLMND 227
>sp|Q08562|ULS1_YEAST ATP-dependent helicase ULS1 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=ULS1 PE=1 SV=1
Length = 1619
Score = 112 bits (279), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 71/247 (28%), Positives = 112/247 (45%), Gaps = 58/247 (23%)
Query: 781 LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSS--RTKDPCELAKFDVVITTYSIVSM 838
L+V P SVLR W EL KV + + ++ GS + K +LA++D V+ +Y ++
Sbjct: 997 LIVAPVSVLRVWKGELETKVKKRAKFTTFIFGGSGNGKVKHWRDLARYDAVLVSYQTLAN 1056
Query: 839 EV----PKQPLGDKED--------EEEKMKIEGEDLPPMYCSSSKKRKCPPSSDRKGSKQ 886
E PK+ G++ ++K E P +C+ S
Sbjct: 1057 EFKKHWPKKLDGEQNQLPAVPHIQALNRLKTSNEYYSPFFCNDS---------------- 1100
Query: 887 KKGPDGLLLDIVAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQ 946
++R++LDE Q+IKN T+ ++AC + RW LSGTPIQ
Sbjct: 1101 -------------------TFYRILLDEGQNIKNKNTRASKACCTINGMYRWVLSGTPIQ 1141
Query: 947 NAIDDLYSYFRFLRYDPFAVYKSFCSMIKVPISKNPVKGY---------KKLQAVLKTIM 997
N++D+LYS RFLR P+ + F I +N Y +K++ +L IM
Sbjct: 1142 NSMDELYSLIRFLRIPPYHKEQRFKLDIGRFFQRNKQYQYDNEDRKNALRKVRVLLNAIM 1201
Query: 998 LRRTKGE 1004
LRR+K +
Sbjct: 1202 LRRSKAD 1208
Score = 64.3 bits (155), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 35/75 (46%), Positives = 47/75 (62%), Gaps = 3/75 (4%)
Query: 639 RLILQVAMQGISQPNAEASAPDGVLAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQG 698
R +L+ Q S + EA P+ + V LL+HQR+ L W++Q E S+ GG+LADD G
Sbjct: 916 RALLENVKQSESIIDGEALTPED-MTVNLLKHQRLGLHWLLQVENSA--KKGGLLADDMG 972
Query: 699 LGKTISTIALILKER 713
LGKTI IAL+L R
Sbjct: 973 LGKTIQAIALMLANR 987
>sp|P79051|RHP16_SCHPO ATP-dependent helicase rhp16 OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=rhp16 PE=3 SV=2
Length = 861
Score = 110 bits (276), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 86/276 (31%), Positives = 126/276 (45%), Gaps = 89/276 (32%)
Query: 768 FVEQAKGRPAAGTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCELAKFD 827
+ + +G+P TLVV P + QW EE+ + +LS +Y+G +R EL+ +D
Sbjct: 295 LLSEPRGKP---TLVVAPVVAIMQWKEEI--DTHTNKALSTYLYYGQARDISGEELSSYD 349
Query: 828 VVITTYSIVSMEVPKQPLGDKEDEEEKMKIEGEDLPPMYCSSSKKRKCPPSSDRKGSKQK 887
VV+T+Y+++ S RK +R G ++K
Sbjct: 350 VVLTSYNVIE--------------------------------SVYRK-----ERSGFRRK 372
Query: 888 KGPDGLLLDIVAGP--LAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPI 945
G +V L ++ ++R++LDEA IK+ ARA GLR R+ CLSGTP+
Sbjct: 373 NG-------VVKEKSLLHQMEFYRIILDEAHGIKSRTCNTARAVCGLRTTRKICLSGTPL 425
Query: 946 QNAIDDLYSYFRFLRYDPFAVY----------------KSFC----------------SM 973
QN I +L+S RFLR DPFA Y +S C M
Sbjct: 426 QNRIGELFSLLRFLRADPFAYYYCLQCECKSLHWRFSDRSNCDECGHKPMSHTCYFNAEM 485
Query: 974 IKVPISKNPVKG-----YKKLQAVLKTIMLRRTKGE 1004
+K PI K +G +KK+ ++LK IMLRRTK E
Sbjct: 486 LK-PIQKFGYEGPGKLAFKKVHSLLKHIMLRRTKLE 520
Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/50 (52%), Positives = 34/50 (68%), Gaps = 2/50 (4%)
Query: 663 LAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKE 712
L + LL QR + W+ ++E SS GGILAD+ G+GKTI TIAL+L E
Sbjct: 251 LVLNLLPFQREGVYWLKRQEDSSF--GGGILADEMGMGKTIQTIALLLSE 298
>sp|Q6FY76|RAD5_CANGA DNA repair protein RAD5 OS=Candida glabrata (strain ATCC 2001 / CBS
138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=RAD5 PE=3 SV=1
Length = 1151
Score = 109 bits (273), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 86/329 (26%), Positives = 150/329 (45%), Gaps = 78/329 (23%)
Query: 679 VQKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNG 738
+++ T + +GGIL+D+ GLGKTIS ++L+L RP T + E+ NL +D
Sbjct: 497 LERPTMNSFKNGGILSDEMGLGKTISALSLVLM-RPKDEHTTSQSLFHQESSNLSSDD-- 553
Query: 739 IQVNGLDLVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTSVLRQWAEELRN 798
V+ +S+ + TL++ P S+L QW +E +
Sbjct: 554 -----------------VIEIKEPERSYAY---------KTTLIIVPMSLLTQWRDEF-D 586
Query: 799 KVTSKGSLSVLVYHGSSRTKDPCELAKFD----VVITTYSIVSMEVPKQPLGDKEDEEEK 854
KV + L+ +Y+G + + L K VV+TTY IV ++E K
Sbjct: 587 KVNNNAGLTCELYYGGNVSSLKSLLIKRKNPPTVVLTTYGIV------------QNEWTK 634
Query: 855 MKIEGEDLPPMYCSSSKKRKCPPSSDRKGSKQKKGPDGLLLDIVAGPLAKVGWFRVVLDE 914
+ +G ++ + +S + + +FR++LDE
Sbjct: 635 LSKDGTNIRSLGRTSG-------------------------------IFSIEFFRIILDE 663
Query: 915 AQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAVYKSFCSMI 974
+I+N T ++A L +K RW L+GTPI N +DDLYS +FL+ +P++ + I
Sbjct: 664 GHTIRNKSTITSKAVLELSSKYRWILTGTPIINRLDDLYSLVKFLKLEPWSQIGYWKQFI 723
Query: 975 KVPI-SKNPVKGYKKLQAVLKTIMLRRTK 1002
P +N + + + A+++ ++LRRTK
Sbjct: 724 TNPFEERNFKQAFDVVNAIMEPVLLRRTK 752
>sp|Q4IJ84|RAD5_GIBZE DNA repair protein RAD5 OS=Gibberella zeae (strain PH-1 / ATCC
MYA-4620 / FGSC 9075 / NRRL 31084) GN=RAD5 PE=3 SV=1
Length = 1154
Score = 107 bits (267), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 88/338 (26%), Positives = 148/338 (43%), Gaps = 89/338 (26%)
Query: 673 IALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNL 732
++L + VQ++ HC GGILAD+ GLGKTI ++L+ R
Sbjct: 501 LSLDFPVQEQ----HCLGGILADEMGLGKTIQMLSLVHTHR------------------- 537
Query: 733 DEEDNGIQVNGLDLVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTSVLRQW 792
+ + + V S+ ++ G +++S TLVV P S+L QW
Sbjct: 538 ----SEVALEARQSVVARSNVNQLTRLGKNSESI-------LDAPCTTLVVAPMSLLSQW 586
Query: 793 AEELRNKVTSKGSLSVLVYHGSSRTKDPCELA-------KFDVVITTYSIVSMEVPKQPL 845
E K + G++ +Y+G+ ++ + L D+VIT+Y +V E
Sbjct: 587 QSEA-EKASKDGTMKTELYYGNEKSSNLQALCCASNAANAPDLVITSYGVVLSEF----- 640
Query: 846 GDKEDEEEKMKIEGEDLPPMYCSSSKKRKCPPSSDRKGSKQKKGPDGLLLDIVAGPLAKV 905
SS + K +GL +
Sbjct: 641 --------------------------------SSLAARNGDKSFHNGLF---------SL 659
Query: 906 GWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFA 965
+FR+++DEA IKN ++ ++AC+ + A RW L+GTPI N ++DL+S RFL +P+
Sbjct: 660 RFFRIIIDEAHHIKNRSSKTSKACYEISATHRWALTGTPIVNKLEDLFSLVRFLGVEPWN 719
Query: 966 VYKSFCSMIKVPI-SKNPVKGYKKLQAVLKTIMLRRTK 1002
+ + + I VP S + ++ +Q VL+ ++LRRTK
Sbjct: 720 NFSFWRTFITVPFESGDFMRALDVVQTVLEPLVLRRTK 757
>sp|Q9FF61|SM3L1_ARATH Putative SWI/SNF-related matrix-associated actin-dependent regulator
of chromatin subfamily A member 3-like 1 OS=Arabidopsis
thaliana GN=At5g05130 PE=2 SV=1
Length = 881
Score = 107 bits (267), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 47/102 (46%), Positives = 68/102 (66%)
Query: 901 PLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLR 960
P+ K+ W R++LDEA +IKN Q +R L+A RRW ++GTPIQN DLYS FLR
Sbjct: 425 PVKKMEWLRIILDEAHTIKNANAQQSRVVCKLKASRRWAVTGTPIQNGSFDLYSLMAFLR 484
Query: 961 YDPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTK 1002
++PF++ + S+I+ P+ + KG +LQ ++ TI LRRTK
Sbjct: 485 FEPFSIKSYWQSLIQRPLGQGNKKGLSRLQVLMATISLRRTK 526
Score = 70.9 bits (172), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 60/212 (28%), Positives = 89/212 (41%), Gaps = 41/212 (19%)
Query: 656 ASAPDGVLAVPLLRHQRIALSWMVQKETSSLH--------------------------CS 689
A P V+ L HQ+ L W++ +E S
Sbjct: 220 AEPPREVIKSELFAHQKEGLGWLLHREKSGELPPFWEEKDGEFLNTLTNYRSDKRPDPLR 279
Query: 690 GGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGIQVNGLDLVKQ 749
GG+ ADD GLGKT++ ++LI +R + T + L D E + I+ G +
Sbjct: 280 GGVFADDMGLGKTLTLLSLIAFDRYGNASTSTPTEEPL-----DGEGDKIEKKGKKRGRG 334
Query: 750 ESD--YCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTSVLRQWAEELRNKVTSKGSLS 807
+S R N ++ TL+VCP SV+ W +L T G L
Sbjct: 335 KSSESVTRKKLKTDDVVGMNVSQKT-------TLIVCPPSVISAWITQLEEH-TVPGILK 386
Query: 808 VLVYHGSSRTKDPCELAKFDVVITTYSIVSME 839
V +YHG RT D EL K+D+V+TTY +++E
Sbjct: 387 VYMYHGGERTDDVNELMKYDIVLTTYGTLAVE 418
>sp|Q6BIP2|RAD5_DEBHA DNA repair protein RAD5 OS=Debaryomyces hansenii (strain ATCC 36239 /
CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=RAD5 PE=3
SV=2
Length = 1190
Score = 103 bits (257), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 84/323 (26%), Positives = 139/323 (43%), Gaps = 97/323 (30%)
Query: 688 CSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGIQVNGLDLV 747
GGILAD+ GLGKTIST+ALI N + + D++
Sbjct: 537 VKGGILADEMGLGKTISTLALI---------------------------NSVPI---DVM 566
Query: 748 KQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTSVLRQWAEELRNKVTSKGSLS 807
+E+ +E + TL++ P S+L QW +E +K + +
Sbjct: 567 FEENKE---------------LEDKTIYASKTTLIIVPMSLLSQWQKEF-DKANNNSNHK 610
Query: 808 VLVYHGSSRTKDPCEL---AKFD---VVITTYSIVSMEVPKQPLGDKEDEEEKMKIEGED 861
+Y+G S T D + K D V+ITTY V E
Sbjct: 611 CFIYYGDSATTDLSPVLCNKKKDIPIVMITTYGTVLNE---------------------- 648
Query: 862 LPPMYCSSSKKRKCPPSSDRKGSKQKKGPDGLLLDIVAGPLAKVGWFRVVLDEAQSIKNH 921
+ S +R D KG K G L V +FR+VLDE +I+N
Sbjct: 649 ----FTRISNRR------DAKGFLPKIG------------LFSVKFFRIVLDEGHNIRNR 686
Query: 922 RTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAVYKSFCSMIKVPISKN 981
+ ++A + + + R+W L+GTP+ N +DDLYS +FL +P++ + + + + +P +
Sbjct: 687 TAKTSKAIYEILSNRKWVLTGTPVINRLDDLYSLVKFLELEPWSNFSYWKTFVTLPFEQR 746
Query: 982 PV-KGYKKLQAVLKTIMLRRTKG 1003
+ + ++++L+ I +RRTK
Sbjct: 747 KISQTLDVVKSILEPIFIRRTKN 769
>sp|Q753V5|RAD5_ASHGO DNA repair protein RAD5 OS=Ashbya gossypii (strain ATCC 10895 / CBS
109.51 / FGSC 9923 / NRRL Y-1056) GN=RAD5 PE=3 SV=2
Length = 1085
Score = 103 bits (256), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 91/319 (28%), Positives = 129/319 (40%), Gaps = 84/319 (26%)
Query: 690 GGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGIQVNGLDLVKQ 749
GGILAD+ GLGKTIS +ALI PS D K L T Q
Sbjct: 455 GGILADEMGLGKTISILALI--TMVPS-----DTKHLLTT------------------AQ 489
Query: 750 ESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTSVLRQWAEELRNKVTSKGSLSVL 809
E P G + + K A+ TL+V P S+L QW E +V L
Sbjct: 490 EKP-----PVGHLSLELG-ISTVKPYTASTTLIVVPMSLLPQWRNEFV-RVNDGNGLYCE 542
Query: 810 VYHGSSRTKDPCELAKFD----VVITTYSIVSMEVPKQPLGDKEDEEEKMKIEGEDLPPM 865
VY+ + + L K VV+TTY +V E K D E E
Sbjct: 543 VYYAGNVSNLRTLLVKQKSPPSVVLTTYGVVQTEWSKLQQFDYEASNEG----------- 591
Query: 866 YCSSSKKRKCPPSSDRKGSKQKKGPDGLLLDIVAGPLAKVGWFRVVLDEAQSIKNHRTQV 925
L V +FR++LDE +I+N T+
Sbjct: 592 ------------------------------------LFSVEFFRIILDEGHNIRNRTTKT 615
Query: 926 ARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAVYKSFCSMIKVPISKNPV-K 984
++A L ++R+W L+GTPI N +DDL+S +F+ ++P+ + + P K
Sbjct: 616 SKAVMALTSRRKWVLTGTPIMNRLDDLFSLIKFMNFEPWCKIDYWRQFVSDPFEKKDYSS 675
Query: 985 GYKKLQAVLKTIMLRRTKG 1003
+ +QAV+ I+LRRTK
Sbjct: 676 ALEVIQAVMGPILLRRTKN 694
>sp|P32849|RAD5_YEAST DNA repair protein RAD5 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=RAD5 PE=1 SV=1
Length = 1169
Score = 103 bits (256), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 87/318 (27%), Positives = 137/318 (43%), Gaps = 78/318 (24%)
Query: 690 GGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGIQVNGLDLVKQ 749
GGIL+D+ GLGKT++ +L+L P D K D E+ + N
Sbjct: 527 GGILSDEMGLGKTVAAYSLVLS--CPHDSDVVDKKL------FDIENTAVSDN------- 571
Query: 750 ESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTSVLRQWAEELRNKVTSKGSLSVL 809
+P+ + + K + TL+V P S+L QW+ E K + +
Sbjct: 572 -------LPS-------TWQDNKKPYASKTTLIVVPMSLLTQWSNEF-TKANNSPDMYHE 616
Query: 810 VYHG----SSRTKDPCELAKFDVVITTYSIVSMEVPKQPLGDKEDEEEKMKIEGEDLPPM 865
VY+G S +T VV+TTY IV E K G DE+
Sbjct: 617 VYYGGNVSSLKTLLTKTKTPPTVVLTTYGIVQNEWTKHSKGRMTDED------------- 663
Query: 866 YCSSSKKRKCPPSSDRKGSKQKKGPDGLLLDIVAGPLAKVGWFRVVLDEAQSIKNHRTQV 925
++I +G L V ++R+++DE +I+N T
Sbjct: 664 -----------------------------VNISSG-LFSVNFYRIIIDEGHNIRNRTTVT 693
Query: 926 ARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAVYKSFCSMIKVPI-SKNPVK 984
++A L+ K +W L+GTPI N +DDLYS +FL DP+ + + + P SKN +
Sbjct: 694 SKAVMALQGKCKWVLTGTPIINRLDDLYSLVKFLELDPWRQINYWKTFVSTPFESKNYKQ 753
Query: 985 GYKKLQAVLKTIMLRRTK 1002
+ + A+L+ ++LRRTK
Sbjct: 754 AFDVVNAILEPVLLRRTK 771
>sp|Q5ACX1|RAD5_CANAL DNA repair protein RAD5 OS=Candida albicans (strain SC5314 / ATCC
MYA-2876) GN=RAD5 PE=3 SV=1
Length = 1084
Score = 102 bits (255), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 90/324 (27%), Positives = 131/324 (40%), Gaps = 104/324 (32%)
Query: 690 GGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGIQVNGLDLVKQ 749
GGILAD+ GLGKTI+T+AL VN
Sbjct: 458 GGILADEMGLGKTIATLAL--------------------------------VNS------ 479
Query: 750 ESDYCRVVPNGSSAKSFNFVEQAKGRPAAG--TLVVCPTSVLRQWAEELRNKVTSKGSLS 807
VP NF E RP A TL+V P S+L QW E + +
Sbjct: 480 -------VPYD------NFPEPKSDRPYASQTTLIVVPMSLLFQWKSEFEKCNNNSRHVC 526
Query: 808 VLVYHGSSRTKDPCELAKFD------VVITTYSIVSMEVPKQPLGDKEDEEEKMKIEGED 861
L Y T L D V+ITTY V E
Sbjct: 527 RLHYGEDQETNLAWSLCNPDNSKIPIVMITTYGTVLNE---------------------- 564
Query: 862 LPPMYCSSSKKRKCPPSSDRKGSKQKKGPDGLLLDIVAGPLAKVGWFRVVLDEAQSIKNH 921
+ SK+R + KG K G L V +FR++LDE +I+N
Sbjct: 565 ----FTRLSKRR------NSKGELPKVG------------LYSVKFFRIILDEGHNIRNR 602
Query: 922 RTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAVYKSFCSMIKVPISKN 981
T+ A++ + L++ R+W L+GTPI N +DDLYS +FL DP+ + + + + +P +
Sbjct: 603 NTKTAKSVYELQSSRKWILTGTPIVNRLDDLYSLTKFLELDPWNNFSYWKTFVTLPFEQK 662
Query: 982 PV-KGYKKLQAVLKTIMLRRTKGE 1004
+ + ++++L+ I LRRTK +
Sbjct: 663 KISQTLDVVKSILEPIFLRRTKSQ 686
>sp|P36607|RAD5_SCHPO DNA repair protein rad5 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=rad8 PE=1 SV=1
Length = 1133
Score = 102 bits (253), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 43/102 (42%), Positives = 70/102 (68%), Gaps = 1/102 (0%)
Query: 902 LAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRY 961
L V WFRVVLDE +I+N ++ A+AC + ++ RW ++GTPI N +DDLYS +F+RY
Sbjct: 645 LFSVHWFRVVLDEGHNIRNRESKTAKACHSISSQNRWVITGTPIVNKLDDLYSLIKFMRY 704
Query: 962 DPFAVYKSFCSMIKVPI-SKNPVKGYKKLQAVLKTIMLRRTK 1002
+P+ Y + + + +P SK+ +K +Q++L+ ++LRRTK
Sbjct: 705 EPWCNYTYWQTFVSLPYQSKDVLKALNVVQSILEFLVLRRTK 746
Score = 41.6 bits (96), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 62/161 (38%), Gaps = 52/161 (32%)
Query: 690 GGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGIQVNGLDLVKQ 749
GGILAD+ GLGKTI ++LI P F T++
Sbjct: 524 GGILADEMGLGKTIEVLSLI--HSRPCFSTDE---------------------------- 553
Query: 750 ESDYCRVVPNGSSAKSFNFVEQAKGRPAAG--TLVVCPTSVLRQWAEELRNKVTSKGSLS 807
+P F P A TLVV P S+L QW E KV+
Sbjct: 554 -------IPEA-------FRHSKPSLPVASRTTLVVAPMSLLDQWHSE-ACKVSQGTKFR 598
Query: 808 VLVYHGSSRTKD--PCELAKFD---VVITTYSIVSMEVPKQ 843
++Y+GS + D C + ++IT+Y ++ E +Q
Sbjct: 599 SMIYYGSEKPLDLKSCVIDTSTAPLIIITSYGVLLSEFSQQ 639
>sp|Q9FIY7|SM3L3_ARATH Putative SWI/SNF-related matrix-associated actin-dependent regulator
of chromatin subfamily A member 3-like 3 OS=Arabidopsis
thaliana GN=At5g43530 PE=3 SV=1
Length = 1277
Score = 101 bits (251), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 43/107 (40%), Positives = 70/107 (65%)
Query: 896 DIVAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSY 955
D+ ++ W+R+VLDEA +IK+ +TQ A+A + L + RWCL+GTP+QN ++DLYS
Sbjct: 805 DMANSIFHRIDWYRIVLDEAHTIKSWKTQAAKATFELSSHCRWCLTGTPLQNKLEDLYSL 864
Query: 956 FRFLRYDPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTK 1002
FL +P+ + + +I+ P +G K ++A+L+ +MLRRTK
Sbjct: 865 LCFLHVEPWCNWAWWSKLIQKPYENGDPRGLKLIKAILRPLMLRRTK 911
Score = 77.0 bits (188), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 56/159 (35%), Positives = 81/159 (50%), Gaps = 30/159 (18%)
Query: 679 VQKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNG 738
+Q T++ GGILAD GLGKT+ TIALIL RP E+++ + +N D+ +
Sbjct: 671 IQFPTATQMARGGILADAMGLGKTVMTIALILA-RPGRGNPENEDV-LVADVNADKRNRK 728
Query: 739 IQVNGLDLVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTSVLRQWAEELRN 798
L VK AKG GTL++CP ++L QW +EL
Sbjct: 729 EIHMALTTVK-----------------------AKG----GTLIICPMALLSQWKDELET 761
Query: 799 KVTSKGSLSVLVYHGSSRTKDPCELAKFDVVITTYSIVS 837
+ ++SVLVY+G RT D +A DVV+TTY +++
Sbjct: 762 H-SKPDTVSVLVYYGGDRTHDAKAIASHDVVLTTYGVLT 799
>sp|Q95216|HLTF_RABIT Helicase-like transcription factor OS=Oryctolagus cuniculus GN=HLTF
PE=1 SV=1
Length = 1005
Score = 97.4 bits (241), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 43/102 (42%), Positives = 64/102 (62%)
Query: 901 PLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLR 960
PL + W RV+LDE +I+N Q +A L A+RRW L+GTPIQN++ DL+S FL+
Sbjct: 542 PLHSIRWLRVILDEGHAIRNPNAQQTKAVLDLEAERRWVLTGTPIQNSLKDLWSLLSFLK 601
Query: 961 YDPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTK 1002
PF + + I+ P++ G ++LQ+++K I LRRTK
Sbjct: 602 LKPFVDREWWHRTIQRPVTMGDEGGLRRLQSLIKNITLRRTK 643
Score = 62.0 bits (149), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 49/83 (59%), Gaps = 1/83 (1%)
Query: 755 RVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGS 814
+++ G+SA+ + RP TL++CP SVL W ++ + S L+ VY+G
Sbjct: 451 KILKKGASAQRVQRKLMFEERPRT-TLIICPLSVLSNWIDQFGQHIKSDVHLNFYVYYGP 509
Query: 815 SRTKDPCELAKFDVVITTYSIVS 837
R +DP L+K D+V+TTY+I++
Sbjct: 510 DRIRDPALLSKQDIVLTTYNILT 532
Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 37/78 (47%), Gaps = 26/78 (33%)
Query: 659 PDGVLAVPLLRHQRIALSWMVQKETSSL--------------------------HCSGGI 692
P + PLL HQ+ AL+WMV +E S + GGI
Sbjct: 232 PAEAVETPLLPHQKQALAWMVSRENSRELPPFWELRNDLYYNTITNFSEKDQPENVHGGI 291
Query: 693 LADDQGLGKTISTIALIL 710
LADD GLGKT++ IA+IL
Sbjct: 292 LADDMGLGKTLTAIAVIL 309
>sp|Q14527|HLTF_HUMAN Helicase-like transcription factor OS=Homo sapiens GN=HLTF PE=1 SV=2
Length = 1009
Score = 95.5 bits (236), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 42/102 (41%), Positives = 64/102 (62%)
Query: 901 PLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLR 960
PL + W RV+LDE +I+N Q +A L ++RRW L+GTPIQN++ DL+S FL+
Sbjct: 545 PLHSIRWLRVILDEGHAIRNPNAQQTKAVLDLESERRWVLTGTPIQNSLKDLWSLLSFLK 604
Query: 961 YDPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTK 1002
PF + + I+ P++ G ++LQ+++K I LRRTK
Sbjct: 605 LKPFIDREWWHRTIQRPVTMGDEGGLRRLQSLIKNITLRRTK 646
Score = 57.0 bits (136), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 40/63 (63%), Gaps = 1/63 (1%)
Query: 775 RPAAGTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCELAKFDVVITTYS 834
RP TL++CP SVL W ++ + S L+ VY+G R ++P L+K D+V+TTY+
Sbjct: 474 RPRT-TLIICPLSVLSNWIDQFGQHIKSDVHLNFYVYYGPDRIREPALLSKQDIVLTTYN 532
Query: 835 IVS 837
I++
Sbjct: 533 ILT 535
Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 37/78 (47%), Gaps = 26/78 (33%)
Query: 659 PDGVLAVPLLRHQRIALSWMVQKETSSL--------------------------HCSGGI 692
P + PLL HQ+ AL+WMV +E S + GGI
Sbjct: 232 PAEAIETPLLPHQKQALAWMVSRENSKELPPFWEQRNDLYYNTITNFSEKDRPENVHGGI 291
Query: 693 LADDQGLGKTISTIALIL 710
LADD GLGKT++ IA+IL
Sbjct: 292 LADDMGLGKTLTAIAVIL 309
>sp|P34739|TTF2_DROME Transcription termination factor 2 OS=Drosophila melanogaster
GN=lds PE=1 SV=2
Length = 1061
Score = 93.2 bits (230), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 73/225 (32%), Positives = 109/225 (48%), Gaps = 43/225 (19%)
Query: 626 TGLGGMKSKASDERLILQ------VAMQGISQPNAEASAPDGVLAVPLLRHQRIALSWMV 679
TG GM + + + L L+ V+++ + P A P G L V L+ HQ+ AL+WM
Sbjct: 393 TGAQGMATFNNQKALTLESLKDLHVSLEDLPGPEVLAEDPVG-LKVSLMNHQKHALAWMS 451
Query: 680 QKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGI 739
+E GGILADD GLGKT++ I+ +L +
Sbjct: 452 WRERK--LPRGGILADDMGLGKTLTMISSVLACK-------------------------- 483
Query: 740 QVNGLDLVKQESDYCRVVPNGSSAKSFNFVE--QAKGRP---AAGTLVVCPTSVLRQWAE 794
NG ++ + + + K V ++KGR GTLVVCP S+LRQW
Sbjct: 484 --NGQEMSEGKDESSDSDSEDDKNKKRKSVTGWKSKGRKDTRRGGTLVVCPASLLRQWES 541
Query: 795 ELRNKVTSKGSLSVLVYHGSSRTKDPCELAKFDVVITTYSIVSME 839
E+ +KV S+ L+V V+HG++R L +D+V+TTY IV+ E
Sbjct: 542 EVESKV-SRQKLTVCVHHGNNRETKGKYLRDYDIVVTTYQIVARE 585
Score = 87.0 bits (214), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 41/100 (41%), Positives = 60/100 (60%), Gaps = 4/100 (4%)
Query: 905 VGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPF 964
V W R++LDEA ++NH++Q + A LR K RW L+GTPIQN D+Y+ +FLR PF
Sbjct: 595 VKWRRIILDEAHVVRNHKSQSSLAVCDLRGKYRWALTGTPIQNKELDVYALLKFLRCSPF 654
Query: 965 AVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGE 1004
++ K I G +L ++K++MLRRTK +
Sbjct: 655 DDLHTW----KKWIDNKSAGGQNRLNLLMKSLMLRRTKAQ 690
>sp|P41447|GTA_NPVAC Probable global transactivator OS=Autographa californica nuclear
polyhedrosis virus GN=GTA PE=3 SV=1
Length = 506
Score = 91.3 bits (225), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 91/353 (25%), Positives = 131/353 (37%), Gaps = 131/353 (37%)
Query: 652 PNAEASAPDGVLAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILK 711
PN E P+ LL HQ+ + WM+ +E + +GG+LADD GLGKT
Sbjct: 21 PNFEHQTPN------LLAHQKKGIQWMINREKNG-RPNGGVLADDMGLGKT--------- 64
Query: 712 ERPPSFRTEDDNKRQLETLNLDEEDNGIQVNGLDLVKQESDYCRVVPNGSSAKSFNFVEQ 771
L L L ++N +Q+
Sbjct: 65 ---------------LSVLMLIAKNNSLQL------------------------------ 79
Query: 772 AKGRPAAGTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCELAKFDVVIT 831
TL+VCP S++ W E NK + ++L Y+ S D + + +V+T
Sbjct: 80 -------KTLIVCPLSLINHWVTE--NK-KHDLNFNILKYYKSL---DADTVEHYHIVVT 126
Query: 832 TYSIVSMEVPKQPLGDKEDEEEKMKIEGEDLPPMYCSSSKKRKCPPSSDRKGSKQKKGPD 891
TY ++ + K KQ K
Sbjct: 127 TYDVLL-----------------------------------------AHFKLIKQNK--- 142
Query: 892 GLLLDIVAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDD 951
L W RVVLDEA IKN +T V A L A RWC++GTPI N D
Sbjct: 143 -------QSSLFSTRWHRVVLDEAHIIKNCKTGVHNAACALTATNRWCITGTPIHNKHWD 195
Query: 952 LYSYFRFLRYDPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGE 1004
+YS FL+ PF + + + K S N +K +++K I+L+R K E
Sbjct: 196 MYSMINFLQCRPFNNPRVWKMLNKNNDSTNRIK------SIIKKIVLKRDKSE 242
>sp|Q7TPQ3|SHPRH_MOUSE E3 ubiquitin-protein ligase SHPRH OS=Mus musculus GN=Shprh PE=1 SV=1
Length = 1674
Score = 90.1 bits (222), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 66/229 (28%), Positives = 100/229 (43%), Gaps = 45/229 (19%)
Query: 779 GTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRT--KDPCELAKFDVVITTYSIV 836
TL++ P+S+ QW +E+ V S SL VLVY G + P LA+ D+VI TY ++
Sbjct: 708 ATLIISPSSICHQWVDEINRHVRS-SSLRVLVYQGVKKHGFLQPHFLAEQDIVIITYDVL 766
Query: 837 SMEV--PKQPLGDKEDEEEKMKIEGEDLPPMYCSSSKKRKCPPSSDRKGSKQKKGPDGLL 894
E+ P + ED R+ QK+
Sbjct: 767 RSELNYVNIPHSNSED-----------------------------GRRLRNQKR------ 791
Query: 895 LDIVAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYS 954
+ PL V W+R+ LDEAQ ++ + A L RWC+SGTP+Q ++DL+
Sbjct: 792 YMAIPSPLVAVEWWRICLDEAQMVECPTVKAAEMAQRLSGINRWCISGTPVQRGLEDLFG 851
Query: 955 YFRFLRYDPFAVYKSFCSMIKVPI-SKNPVKGYKKLQAVLKTIMLRRTK 1002
FL +P+ V + ++ P KNP + L + + IM R K
Sbjct: 852 LVVFLGIEPYCVKHWWIRLLYHPYCKKNP----QHLYSFIAKIMWRSAK 896
Score = 38.1 bits (87), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 39/88 (44%), Gaps = 42/88 (47%)
Query: 665 VPLLR-HQRIALSWMVQKET--------SSLH---------------------------- 687
+P+LR +QR A++WM+Q+E +SLH
Sbjct: 296 IPVLRPYQREAVNWMLQQEQFRSAPPADNSLHFLWREIVTPDGLKLYYNPYTGCIIRDFP 355
Query: 688 -----CSGGILADDQGLGKTISTIALIL 710
GGILAD+ GLGKT+ +ALIL
Sbjct: 356 HAGPQLLGGILADEMGLGKTVEVLALIL 383
>sp|Q6CJM4|RAD5_KLULA DNA repair protein RAD5 OS=Kluyveromyces lactis (strain ATCC 8585 /
CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37)
GN=RAD5 PE=3 SV=1
Length = 1114
Score = 90.1 bits (222), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 40/103 (38%), Positives = 65/103 (63%), Gaps = 1/103 (0%)
Query: 902 LAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRY 961
L V +FR++LDE +I+N T+ ++A LR+ R+W L+GTPI N +DDL+S +FL
Sbjct: 616 LFNVVFFRIILDEGHTIRNRSTRTSKAVIALRSSRKWILTGTPIINRLDDLFSLVQFLNL 675
Query: 962 DPFAVYKSFCSMIKVPISK-NPVKGYKKLQAVLKTIMLRRTKG 1003
+P++ + + VP K N + + + AVL+ ++LRRTK
Sbjct: 676 EPWSHINYWKRYVSVPFEKGNYAQAFDVINAVLEPVLLRRTKN 718
Score = 38.9 bits (89), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 50/171 (29%), Positives = 69/171 (40%), Gaps = 41/171 (23%)
Query: 679 VQKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDE-EDN 737
++K +GGILAD+ GLGKTIS +ALI T + DE +
Sbjct: 468 IEKPVIKTIINGGILADEMGLGKTISALALIC------------------TASYDEAHEK 509
Query: 738 GIQVNGLDLVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAA--GTLVVCPTSVLRQWAEE 795
I+ +K+ S P S Q K A TL+V P S+L QW E
Sbjct: 510 KIESTKKPSMKEMSSQVDSSPLRHS--------QHKHDTYAYRTTLIVVPMSLLNQWQSE 561
Query: 796 LRNKVTSKGSLSVLVYHGSSRTKDPCELAKF-------DVVITTYSIVSME 839
K +Y+G++ KD L + V+ITTY I+ E
Sbjct: 562 F-EKANKDLKKRCEIYYGNN-IKD---LRAYVLGPNAPSVIITTYGIIQSE 607
>sp|Q6C2R8|RAD5_YARLI DNA repair protein RAD5 OS=Yarrowia lipolytica (strain CLIB 122 / E
150) GN=RAD5 PE=3 SV=1
Length = 1025
Score = 89.7 bits (221), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 69/236 (29%), Positives = 103/236 (43%), Gaps = 47/236 (19%)
Query: 773 KGRPAAGTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCELAKF---DVV 829
+ R TLVV P S+L QW +E + LS VYH D EL K +++
Sbjct: 456 RDRHVGCTLVVAPMSLLWQWEQE-----CERVGLSTYVYHEKGADIDLDELFKTYSPNIL 510
Query: 830 ITTY-SIVSMEVPKQPLGDKEDEEEKMKIEGEDLPPMYCSSSKKRKCPPSSDRKGSKQKK 888
IT+Y ++VS + LG D + + P ++
Sbjct: 511 ITSYHTLVSHYGQIKALGGGLDRNVISETSSHERPKIFTKH------------------- 551
Query: 889 GPDGLLLDIVAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNA 948
+ R+VLDEA IKN T A+AC LRA +W L+GTPI N
Sbjct: 552 ------------------FHRIVLDEAHVIKNRNTVSAKACCLLRATNKWALTGTPIHNR 593
Query: 949 IDDLYSYFRFLRYDPFAVYKSFCSMIKVPISKNP-VKGYKKLQAVLKTIMLRRTKG 1003
++DL+S +FL P+ + + + I +P + V +Q +L+ I+LRRTK
Sbjct: 594 LEDLFSILKFLGAAPWNDFIYWRNFITLPFQEGKIVSALMTVQCILEPIVLRRTKN 649
Score = 41.6 bits (96), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 21/40 (52%), Positives = 29/40 (72%), Gaps = 2/40 (5%)
Query: 674 ALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKER 713
AL+ K+ S SGGILAD+ GLGKTIST+A++ ++R
Sbjct: 421 ALTLKFPKQERSF--SGGILADEMGLGKTISTLAMVYRDR 458
>sp|Q149N8|SHPRH_HUMAN E3 ubiquitin-protein ligase SHPRH OS=Homo sapiens GN=SHPRH PE=1
SV=2
Length = 1683
Score = 89.4 bits (220), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 63/220 (28%), Positives = 96/220 (43%), Gaps = 41/220 (18%)
Query: 779 GTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSR--TKDPCELAKFDVVITTYSIV 836
TL++ P+S+ QW +E+ V S SL VLVY G + P LA+ D+VI TY ++
Sbjct: 717 ATLIISPSSICHQWVDEINRHVRS-SSLRVLVYQGVKKDGFLQPHFLAEQDIVIITYDVL 775
Query: 837 SMEVPKQ--PLGDKEDEEEKMKIEGEDLPPMYCSSSKKRKCPPSSDRKGSKQKKGPDGLL 894
E+ P + ED R+ QK+
Sbjct: 776 RSELNYVDIPHSNSED-----------------------------GRRLRNQKR------ 800
Query: 895 LDIVAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYS 954
+ PL V W+R+ LDEAQ ++ + A L RWC+SGTP+Q ++DL+
Sbjct: 801 YMAIPSPLVAVEWWRICLDEAQMVECPTVKAAEMAQRLSGINRWCISGTPVQRGLEDLFG 860
Query: 955 YFRFLRYDPFAVYKSFCSMIKVPI-SKNPVKGYKKLQAVL 993
FL +P+ V + ++ P KNP Y + +L
Sbjct: 861 LVVFLGIEPYCVKHWWVRLLYRPYCKKNPQHLYSFIAKIL 900
Score = 38.1 bits (87), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 39/88 (44%), Gaps = 42/88 (47%)
Query: 665 VPLLR-HQRIALSWMVQKET--------SSLH---------------------------- 687
+P+LR +QR A++WM+Q+E S+LH
Sbjct: 301 IPVLRPYQREAVNWMLQQECFRSSPATESALHFLWREIVTSEGLKLYYNPYTGCIIREYP 360
Query: 688 -----CSGGILADDQGLGKTISTIALIL 710
GGILAD+ GLGKT+ +ALIL
Sbjct: 361 NSGPQLLGGILADEMGLGKTVEVLALIL 388
>sp|O43065|MOT1_SCHPO Probable helicase mot1 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=mot1 PE=1 SV=4
Length = 1953
Score = 79.7 bits (195), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 98/375 (26%), Positives = 140/375 (37%), Gaps = 127/375 (33%)
Query: 647 QGISQPNAEASAPDGVLAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTI 706
Q ++ EA + ++ L ++Q+ ++W+ LH GIL DD GLGKT+ TI
Sbjct: 1338 QMLNPSKVEAFSIPVPISADLRKYQQEGVNWLAFLNKYELH---GILCDDMGLGKTLQTI 1394
Query: 707 ALILKERPPSFRTEDDNKRQLETLNLDEEDNGIQVNGLDLVKQESDYCRVVPNGSSAKSF 766
++ D RQ L EE S + F
Sbjct: 1395 CIV---------ASDHYNRQ----KLFEE-------------------------SGSPKF 1416
Query: 767 NFVEQAKGRPAAGTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHG--SSRTKDPCELA 824
V +L+VCP+++ W +EL T L V Y G + R K ++
Sbjct: 1417 AHVP---------SLIVCPSTLAGHWQQELS---TYAPFLKVSAYVGPPAERAKIRSKMK 1464
Query: 825 KFDVVITTYSIVSMEVPKQPLGDKEDEEEKMKIEGEDLPPMYCSSSKKRKCPPSSDRKGS 884
K DVV+T+Y I + D +E +KI+
Sbjct: 1465 KSDVVVTSYDIC-----------RNDVDELVKID-------------------------- 1487
Query: 885 KQKKGPDGLLLDIVAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTP 944
W VLDE IKN R ++ +A LR+ R LSGTP
Sbjct: 1488 ----------------------WNYCVLDEGHVIKNARAKLTKAVKSLRSYHRLILSGTP 1525
Query: 945 IQNAIDDLYSYFRFLRYDPFAVYKSFCSMIKVPI---------SKNPVKGYKKLQAVLKT 995
IQN + +L+S F FL K+F PI SK +G L+A+ K
Sbjct: 1526 IQNNVLELWSLFDFLMPGFLGTEKTFQERFVRPIAASRDAKSSSKERERGTLALEAIHKQ 1585
Query: 996 I---MLRRTKGEDCL 1007
+ MLRR K ED L
Sbjct: 1586 VLPFMLRRLK-EDVL 1599
>sp|O10302|GTA_NPVOP Probable global transactivator OS=Orgyia pseudotsugata multicapsid
polyhedrosis virus GN=GTA PE=3 SV=1
Length = 498
Score = 75.9 bits (185), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 44/109 (40%), Positives = 59/109 (54%), Gaps = 8/109 (7%)
Query: 899 AGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRF 958
+G LA+ W RVVLDEA IKNH+T V A L A RWC++GTPI N D+Y+ F
Sbjct: 144 SGLLAR-HWHRVVLDEAHVIKNHQTGVHAAACALSADNRWCITGTPIHNRHWDMYAIIHF 202
Query: 959 LRYDPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGEDCL 1007
LR PF + V N ++++V+ I+L+R K E L
Sbjct: 203 LRCRPF-------DNVGVWRMLNRNNDTNRIKSVVNKIVLKRNKAEIAL 244
Score = 40.4 bits (93), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 33/59 (55%), Gaps = 7/59 (11%)
Query: 657 SAPDGVLAVP------LLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 709
SA DG P LL HQ+ + WM ++E GG+LADD GLGKT+S + LI
Sbjct: 13 SAGDGADDAPCLDAPNLLEHQKRGIEWMRRRERRGR-PHGGVLADDMGLGKTLSVMRLI 70
>sp|Q06554|IRC20_YEAST Uncharacterized ATP-dependent helicase IRC20 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=IRC20 PE=1
SV=1
Length = 1556
Score = 75.9 bits (185), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 72/308 (23%), Positives = 117/308 (37%), Gaps = 93/308 (30%)
Query: 688 CSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGIQVNGLDLV 747
C+ G+LA++ GLGKTI ++LIL N+R+L+
Sbjct: 384 CAKGVLAEEMGLGKTIEILSLILL-----------NRRKLK------------------- 413
Query: 748 KQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTSVLRQWAEELRNKVTSKGSLS 807
S +F E TL++CP ++L+QW EE+ SL
Sbjct: 414 -------------DSEATFIDDENRTITKTKTTLIICPNAILKQWLEEIE---LHANSLK 457
Query: 808 VLVYHGSSRTKDPC--------ELAKFDVVITTYSIVSMEVPKQPLGDKEDEEEKMKIEG 859
Y G + C +L ++D+++T+Y+I++ EV
Sbjct: 458 WYTYRGYNEIMKDCKTVDEAVQQLCQYDIIVTSYNIIATEVHHAEFNR------------ 505
Query: 860 EDLPPMYCSSSKKRKCPPSSDRKGSKQKKGPDGLLLDIVAGPLAKVGWFRVVLDEAQSIK 919
S +R P D + PLA + ++R++LDE Q ++
Sbjct: 506 --------SIRSRRLKSPKYD-----------------YSSPLALMQFYRIILDEVQMLR 540
Query: 920 NHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAVYKSFCSMIKVPIS 979
+ T A+ L W +SGTPIQN I + +L+ PF F ++ I
Sbjct: 541 SSSTYSAKCTSLLHRIHTWGVSGTPIQN-IYNFRMIMSYLKLHPFCDEVDFIRTLQEEIK 599
Query: 980 -KNPVKGY 986
+N K Y
Sbjct: 600 LRNEAKDY 607
>sp|Q9NEL2|SSL1_CAEEL Helicase ssl-1 OS=Caenorhabditis elegans GN=ssl-1 PE=2 SV=4
Length = 2395
Score = 70.9 bits (172), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 62/240 (25%), Positives = 96/240 (40%), Gaps = 82/240 (34%)
Query: 781 LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCELAK-------FDVVITTY 833
L+V PTSV+ W E + + L +L Y G++ K+ E K F V IT+Y
Sbjct: 611 LIVVPTSVILNWEMEFKKWCPA---LKILTYFGTA--KERAEKRKGWMKPNCFHVCITSY 665
Query: 834 SIVSMEVPKQPLGDKEDEEEKMKIEGEDLPPMYCSSSKKRKCPPSSDRKGSKQKKGPDGL 893
V + D + KQ+
Sbjct: 666 KTV-----------------------------------------TQDIRAFKQR------ 678
Query: 894 LLDIVAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLY 953
W ++LDEAQ+IKN ++Q +A +RA+RR L+GTP+QN++ +L+
Sbjct: 679 ------------AWQYLILDEAQNIKNWKSQRWQALLNVRARRRLLLTGTPLQNSLMELW 726
Query: 954 SYFRFLRYDPFAVYKSFCSMIKVPIS---------KNPVKGYKKLQAVLKTIMLRRTKGE 1004
S FL F+ + F P++ P+ G +L VL+ +LRR K E
Sbjct: 727 SLMHFLMPTIFSSHDDFKDWFSNPLTGMMEGNMEFNAPLIG--RLHKVLRPFILRRLKKE 784
Score = 41.6 bits (96), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 21/43 (48%), Positives = 28/43 (65%), Gaps = 3/43 (6%)
Query: 667 LLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 709
L +Q + L WMV +L+ GILAD+ GLGKTI TI+L+
Sbjct: 558 LREYQMVGLDWMVTLYEKNLN---GILADEMGLGKTIQTISLL 597
>sp|Q9UTL9|YIV5_SCHPO Uncharacterized ATP-dependent helicase C144.05
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPAC144.05 PE=3 SV=1
Length = 1375
Score = 68.2 bits (165), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 72/283 (25%), Positives = 113/283 (39%), Gaps = 89/283 (31%)
Query: 690 GGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGIQVNGLDLVKQ 749
GGILAD+ G+GKT+ + L+L + P T
Sbjct: 285 GGILADEMGMGKTLEVLGLVLHHQLPISLT------------------------------ 314
Query: 750 ESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTSVLRQWAEELRNKVTSKGSLSVL 809
D C +F+ V + + TL++ P+++L QW E+ V SL V
Sbjct: 315 --DTC----------TFDQVVGKNVKYSKATLIITPSTILDQWLSEIDLHV---PSLKVF 359
Query: 810 VYHGSSRTKDPCELAKF----DVVITTYSIVSMEVPKQPLGDKEDEEEKMKIEGEDLPPM 865
Y G R + + AK D+V+T+YS + E L E ++ E
Sbjct: 360 HYQGI-RKSNGLKSAKIFLDCDIVVTSYSDLRFE-----LLYTESHSRTLRHE------- 406
Query: 866 YCSSSKKRKCPPSSDRKGSKQKKGPDGLLLDIVAGPLAKVGWFRVVLDEAQSIKNHRTQV 925
KR P S PL V W+R+ +DEAQ ++ ++ V
Sbjct: 407 ------KRHVSPKS---------------------PLIDVCWWRICVDEAQMVETSQSNV 439
Query: 926 ARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAVYK 968
A+ + + W +SGTP+++ +DDL+ LRY P +YK
Sbjct: 440 AQMIYRIPRVNCWTVSGTPVRSEVDDLFGLLFLLRYSPMYLYK 482
>sp|Q6ZRS2|SRCAP_HUMAN Helicase SRCAP OS=Homo sapiens GN=SRCAP PE=1 SV=3
Length = 3230
Score = 67.8 bits (164), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 56/232 (24%), Positives = 95/232 (40%), Gaps = 70/232 (30%)
Query: 781 LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCELAKFDVVITTYSIVSMEV 840
L++ PTSV+ W EL+ S +L Y+G+ +
Sbjct: 671 LIIVPTSVMLNWEMELKRWCPS---FKILTYYGAQK------------------------ 703
Query: 841 PKQPLGDKEDEEEKMKIEGEDLPPMY--CSSSKKRKCPPSSDRKGSKQKKGPDGLLLDIV 898
E K+K +G P + C +S K D + ++K
Sbjct: 704 -----------ERKLKRQGWTKPNAFHVCITSYKLVL---QDHQAFRRKN---------- 739
Query: 899 AGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRF 958
W ++LDEAQ+IKN ++Q ++ ++RR L+GTP+QN++ +L+S F
Sbjct: 740 --------WRYLILDEAQNIKNFKSQRWQSLLNFNSQRRLLLTGTPLQNSLMELWSLMHF 791
Query: 959 LRYDPFAVYKSFCSMIKVPISKNPVKG--------YKKLQAVLKTIMLRRTK 1002
L F ++ F P++ ++G K+L VL+ +LRR K
Sbjct: 792 LMPHVFQSHREFKEWFSNPLTGM-IEGSQEYNEGLVKRLHKVLRPFLLRRVK 842
Score = 41.2 bits (95), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 21/43 (48%), Positives = 27/43 (62%), Gaps = 3/43 (6%)
Query: 667 LLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 709
L +Q I L W+V L+ GILAD+ GLGKTI TI+L+
Sbjct: 618 LREYQHIGLDWLVTMYEKKLN---GILADEMGLGKTIQTISLL 657
>sp|Q4P328|SWR1_USTMA Helicase SWR1 OS=Ustilago maydis (strain 521 / FGSC 9021) GN=SWR1
PE=3 SV=1
Length = 1830
Score = 66.6 bits (161), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 42/117 (35%), Positives = 56/117 (47%), Gaps = 19/117 (16%)
Query: 907 WFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYD---- 962
W +VLDEA IKN R+Q + G ++RR L+GTP+QN + DL+S FL +
Sbjct: 1112 WVYLVLDEAHHIKNFRSQRWQTLLGFNSQRRLLLTGTPLQNNLMDLWSLMYFLMPNGATE 1171
Query: 963 -----PFAVYKSFCSMIKVPISKNPVKG----------YKKLQAVLKTIMLRRTKGE 1004
FA K F P+ K G +KL AVL+ +LRR K E
Sbjct: 1172 LPGGGAFANMKDFQDWFSNPLDKAIEGGTSMNDETRAMVQKLHAVLRPYLLRRLKSE 1228
Score = 38.9 bits (89), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 28/42 (66%), Gaps = 7/42 (16%)
Query: 670 HQRIALSWMVQKETSSLHCSG--GILADDQGLGKTISTIALI 709
+Q+I W+ SL+ +G GILAD+ GLGKTI TI+L+
Sbjct: 993 YQQIGFEWLC-----SLYANGVNGILADEMGLGKTIQTISLL 1029
>sp|P94593|YWQA_BACSU Uncharacterized ATP-dependent helicase YwqA OS=Bacillus subtilis
(strain 168) GN=ywqA PE=3 SV=2
Length = 922
Score = 64.7 bits (156), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 37/105 (35%), Positives = 58/105 (55%), Gaps = 1/105 (0%)
Query: 902 LAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRY 961
L+ V W + LDEAQ+IKN T+ +RA L+ LSGTP++N + +L+S F F+
Sbjct: 565 LSSVTWNTICLDEAQNIKNAHTKQSRAIRKLKGLHHIALSGTPMENRLTELWSIFDFMNK 624
Query: 962 DPFAVYKSFCSMIKVPISKN-PVKGYKKLQAVLKTIMLRRTKGED 1005
F +PI K+ K +LQ +++ +LRRTK ++
Sbjct: 625 GYLGSLTGFHKRYVLPIEKDRDEKRIGQLQQLIRPFLLRRTKRDE 669
Score = 37.4 bits (85), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 34/65 (52%), Gaps = 6/65 (9%)
Query: 774 GRPAAGTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCELAKF---DVVI 830
GR L++ PTSVL W EL+ T LSV +++G R K A + DVV+
Sbjct: 496 GRQKTPHLIIAPTSVLGNWQRELQ---TFAPDLSVALHYGPRRPKGDDFAAHYENADVVL 552
Query: 831 TTYSI 835
T+Y +
Sbjct: 553 TSYGL 557
>sp|P0CO18|SWR1_CRYNJ Helicase SWR1 OS=Cryptococcus neoformans var. neoformans serotype D
(strain JEC21 / ATCC MYA-565) GN=SWR1 PE=3 SV=1
Length = 1246
Score = 63.9 bits (154), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 57/118 (48%), Gaps = 20/118 (16%)
Query: 907 WFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLR------ 960
W ++LDEA +IKN R+Q + G +A+RR L+GTP+QN + +L+S FL
Sbjct: 515 WCYMILDEAHNIKNFRSQRWQTLLGFKAQRRLLLTGTPLQNNLMELWSLLYFLMPGGIGA 574
Query: 961 ----YDPFAVYKSFCSMIKVPISK----------NPVKGYKKLQAVLKTIMLRRTKGE 1004
FA +K F P+ K ++ KL +L+ +LRR K E
Sbjct: 575 DATAVVGFANHKEFMEWFSNPMDKAIETGDAMDEETLETVAKLHTLLRPFILRRLKSE 632
Score = 38.5 bits (88), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 28/40 (70%), Gaps = 3/40 (7%)
Query: 670 HQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 709
+Q+ L W+ +++++ GILAD+ GLGKTI TIAL+
Sbjct: 396 YQQAGLEWLASLWSNNMN---GILADEMGLGKTIQTIALL 432
>sp|P0CO19|SWR1_CRYNB Helicase SWR1 OS=Cryptococcus neoformans var. neoformans serotype D
(strain B-3501A) GN=SWR1 PE=3 SV=1
Length = 1246
Score = 63.9 bits (154), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 57/118 (48%), Gaps = 20/118 (16%)
Query: 907 WFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLR------ 960
W ++LDEA +IKN R+Q + G +A+RR L+GTP+QN + +L+S FL
Sbjct: 515 WCYMILDEAHNIKNFRSQRWQTLLGFKAQRRLLLTGTPLQNNLMELWSLLYFLMPGGIGA 574
Query: 961 ----YDPFAVYKSFCSMIKVPISK----------NPVKGYKKLQAVLKTIMLRRTKGE 1004
FA +K F P+ K ++ KL +L+ +LRR K E
Sbjct: 575 DATAVVGFANHKEFMEWFSNPMDKAIETGDAMDEETLETVAKLHTLLRPFILRRLKSE 632
Score = 38.5 bits (88), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 28/40 (70%), Gaps = 3/40 (7%)
Query: 670 HQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 709
+Q+ L W+ +++++ GILAD+ GLGKTI TIAL+
Sbjct: 396 YQQAGLEWLASLWSNNMN---GILADEMGLGKTIQTIALL 432
>sp|Q5ARK3|SWR1_EMENI Helicase swr1 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 /
CBS 112.46 / NRRL 194 / M139) GN=swr1 PE=3 SV=2
Length = 1698
Score = 63.5 bits (153), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 59/122 (48%), Gaps = 19/122 (15%)
Query: 902 LAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLR- 960
L + W ++LDEA +IKN R+Q +A R + R L+GTP+QN + +L+S FL
Sbjct: 942 LKRRSWHYMILDEAHNIKNFRSQRWQALLTFRTRARLLLTGTPLQNNLTELWSLLFFLMP 1001
Query: 961 -------YDPFAVYKSFCSMIKVPISKNPVKGYK-----------KLQAVLKTIMLRRTK 1002
+ FA ++F + P+ + G + KL VL+ +LRR K
Sbjct: 1002 TDGDEAGIEGFADLRNFSEWFRRPVEQILEHGRETMDDEAKQVVTKLHTVLRPYILRRLK 1061
Query: 1003 GE 1004
+
Sbjct: 1062 AD 1063
Score = 38.1 bits (87), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 27/43 (62%), Gaps = 3/43 (6%)
Query: 667 LLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 709
L +Q L W+ ++ ++ GILAD+ GLGKTI TIAL+
Sbjct: 825 LREYQHFGLDWLAGLYSNHIN---GILADEMGLGKTIQTIALL 864
>sp|B5DE69|CHD8_XENTR Chromodomain-helicase-DNA-binding protein 8 OS=Xenopus tropicalis
GN=chd8 PE=2 SV=2
Length = 2184
Score = 62.8 bits (151), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 60/249 (24%), Positives = 100/249 (40%), Gaps = 61/249 (24%)
Query: 760 GSSAKSFNFVEQAKGRPAAGT-LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTK 818
G + +S F+++ G LV+ P S + W E S ++ +VYHGS ++
Sbjct: 785 GKTIQSITFLQEVYNVGIRGPFLVIAPLSTITNWEREF----GSWTQMNTIVYHGSLASR 840
Query: 819 DPCELAKFDVVITTYSIVSMEVPKQPLGDKEDEEEKMKIEGEDLPPMYCSSSKKRKCPPS 878
+I Y MYC SK R P +
Sbjct: 841 Q---------MIQQYE------------------------------MYCKDSKGRLIPGA 861
Query: 879 SDRKGSKQKKGPDGLL--LDIVAG---PLAKVGWFRVVLDEAQSIKNHRTQVARACWGLR 933
D L+ ++V L ++ W V++DEA +KN ++ + +
Sbjct: 862 YKF---------DALITTFEMVLSDCPELREIEWRCVIIDEAHRLKNRNCKLLDSLKHMD 912
Query: 934 AKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAVYKSFCSMIKVPISKNPVKGYKKLQAVL 993
+ + L+GTP+QN +++L+S FL F+ F ++ V +KLQA+L
Sbjct: 913 LEHKVLLTGTPLQNTVEELFSLLHFLEPTQFSSEAEFLKDFGDLKTEEQV---QKLQAIL 969
Query: 994 KTIMLRRTK 1002
K +MLRR K
Sbjct: 970 KPMMLRRLK 978
>sp|Q4WAS9|SWR1_ASPFU Helicase swr1 OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 /
CBS 101355 / FGSC A1100) GN=swr1 PE=3 SV=1
Length = 1695
Score = 62.0 bits (149), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 58/122 (47%), Gaps = 19/122 (15%)
Query: 902 LAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLR- 960
L + W +VLDEA +IKN R+Q + R + R L+GTP+QN + +L+S FL
Sbjct: 947 LKRRNWHYMVLDEAHNIKNFRSQKWQTLLTFRTRARLLLTGTPLQNNLTELWSLLFFLMP 1006
Query: 961 -------YDPFAVYKSFCSMIKVPISKNPVKGYK-----------KLQAVLKTIMLRRTK 1002
+ FA ++F + P+ + G + KL +L+ +LRR K
Sbjct: 1007 SDGDGTGIEGFADLRNFSEWFRRPVEQILEHGRETMDDETKRVVTKLHTILRPYILRRLK 1066
Query: 1003 GE 1004
+
Sbjct: 1067 AD 1068
Score = 38.5 bits (88), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 44/88 (50%), Gaps = 10/88 (11%)
Query: 629 GGMKSKASDERLILQVAMQGISQPN-AEASAPDGVLAVP-LLR-----HQRIALSWMVQK 681
G + +K S+ I G P +E+ AP +P LLR +Q L W+
Sbjct: 785 GTLATKPSEPESISSFEAPGEKPPQPSESPAPGLKTPIPHLLRGTLREYQHYGLDWLAGL 844
Query: 682 ETSSLHCSGGILADDQGLGKTISTIALI 709
+ ++ GILAD+ GLGKTI TIAL+
Sbjct: 845 YNNHIN---GILADEMGLGKTIQTIALL 869
>sp|Q8TD26|CHD6_HUMAN Chromodomain-helicase-DNA-binding protein 6 OS=Homo sapiens GN=CHD6
PE=1 SV=4
Length = 2715
Score = 62.0 bits (149), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 55/101 (54%), Gaps = 3/101 (2%)
Query: 902 LAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRY 961
L K+ W V++DEA +KN ++ + + + L+GTP+QN++++L+S FL
Sbjct: 587 LKKIHWSCVIIDEAHRLKNRNCKLLEGLKLMALEHKVLLTGTPLQNSVEELFSLLNFLEP 646
Query: 962 DPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTK 1002
F +F ++ V KKLQ++LK +MLRR K
Sbjct: 647 SQFPSETAFLEEFGDLKTEEQV---KKLQSILKPMMLRRLK 684
Score = 37.0 bits (84), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 24/100 (24%), Positives = 43/100 (43%), Gaps = 21/100 (21%)
Query: 760 GSSAKSFNFVEQAKGRPAAGT-LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTK 818
G + +S F+ + R G L++ P S + W E R ++ +VYHGS ++
Sbjct: 491 GKTIQSITFLSEIFLRGIHGPFLIIAPLSTITNWEREFRTWT----EMNAIVYHGSQISR 546
Query: 819 DPCE----------------LAKFDVVITTYSIVSMEVPK 842
+ + KF VVITT+ ++ + P+
Sbjct: 547 QMIQQYEMVYRDAQGNPLSGVFKFHVVITTFEMILADCPE 586
>sp|P38144|ISW1_YEAST ISWI chromatin-remodeling complex ATPase ISW1 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=ISW1 PE=1 SV=2
Length = 1129
Score = 61.6 bits (148), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 56/105 (53%), Gaps = 1/105 (0%)
Query: 901 PLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLR 960
PL K+ W +++DEA IKN + +++ ++ R ++GTP+QN + +L++ FL
Sbjct: 312 PLKKINWEYIIIDEAHRIKNEESMLSQVLREFTSRNRLLITGTPLQNNLHELWALLNFLL 371
Query: 961 YDPFAVYKSFCSMIKVP-ISKNPVKGYKKLQAVLKTIMLRRTKGE 1004
D F+ + F ++ K K+L VL+ +LRR K +
Sbjct: 372 PDIFSDAQDFDDWFSSESTEEDQDKIVKQLHTVLQPFLLRRIKSD 416
>sp|O55764|172L_IIV6 Putative helicase 172L OS=Invertebrate iridescent virus 6
GN=IIV6-172L PE=3 SV=1
Length = 606
Score = 61.2 bits (147), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 49/188 (26%), Positives = 83/188 (44%), Gaps = 25/188 (13%)
Query: 780 TLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSS-RTKDPC---ELAKFDVVITTYSI 835
TLV+ +V+ +W E K ++ VL H + D ++ +D+VITTY +
Sbjct: 95 TLVITSKTVMHEWKTEGVEKFFDSDNIRVLYLHRDYIKNIDKISRDDIMTYDIVITTYDV 154
Query: 836 VSMEVPK--QPLGDKEDEEEKMKIEGEDLPPMYCSSSKKRKCPPSSDRKGSKQKKGPDGL 893
K L E EE+ ++ + + ++KRK + KG+
Sbjct: 155 CLFACKKGNYFLQCFEMGEEQSLMKNK----IVAIHTRKRKDANLPNLKGTA-------- 202
Query: 894 LLDIVAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLY 953
++ G W RV+ DE+Q N +T + + K +WCL+GTPI+N D++
Sbjct: 203 ---VIYG----TPWERVICDESQKFANPKTMTYKCIMAVYGKYKWCLTGTPIRNYETDIW 255
Query: 954 SYFRFLRY 961
+ RF Y
Sbjct: 256 AQLRFCGY 263
>sp|O13682|SWR1_SCHPO Helicase swr1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=swr1 PE=3 SV=1
Length = 1288
Score = 61.2 bits (147), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 57/121 (47%), Gaps = 17/121 (14%)
Query: 901 PLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFL- 959
P + W ++LDEA +IKN R+Q ++ A+ R L+GTP+QN + +L+S FL
Sbjct: 563 PFRRKKWQYMILDEAHNIKNFRSQRWQSLLNFNAEHRLLLTGTPLQNNLVELWSLLYFLM 622
Query: 960 ------RYDPFAVYKSFCSMIKVPISK--------NP--VKGYKKLQAVLKTIMLRRTKG 1003
FA K F P+ + NP + KL VL+ +LRR K
Sbjct: 623 PAGVTQNNSAFANLKDFQDWFSKPMDRLIEEGQDMNPEAMNTVAKLHRVLRPYLLRRLKT 682
Query: 1004 E 1004
E
Sbjct: 683 E 683
Score = 44.7 bits (104), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 47/92 (51%), Gaps = 19/92 (20%)
Query: 632 KSKASDERLILQVAMQGISQ------PNAEASAPDGVLAVPLL------RHQRIALSWMV 679
K + +D+ L + ++ GIS+ PN + VP L +Q+ L W+
Sbjct: 400 KRRVNDDGLARKKSIAGISEQRKFDEPNGSPVLHANKIQVPFLFRGTLREYQQYGLEWL- 458
Query: 680 QKETSSLHCSG--GILADDQGLGKTISTIALI 709
++LH S GILAD+ GLGKTI TIAL+
Sbjct: 459 ----TALHDSNTNGILADEMGLGKTIQTIALL 486
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.313 0.131 0.386
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 389,847,768
Number of Sequences: 539616
Number of extensions: 17340239
Number of successful extensions: 32254
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 194
Number of HSP's successfully gapped in prelim test: 59
Number of HSP's that attempted gapping in prelim test: 31427
Number of HSP's gapped (non-prelim): 768
length of query: 1009
length of database: 191,569,459
effective HSP length: 128
effective length of query: 881
effective length of database: 122,498,611
effective search space: 107921276291
effective search space used: 107921276291
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 66 (30.0 bits)