Query 001825
Match_columns 1009
No_of_seqs 343 out of 1870
Neff 5.0
Searched_HMMs 46136
Date Fri Mar 29 10:13:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001825.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001825hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0384 Chromodomain-helicase 100.0 1.1E-49 2.4E-54 478.1 9.4 341 510-1006 242-593 (1373)
2 KOG4439 RNA polymerase II tran 100.0 1.9E-47 4.1E-52 439.6 14.4 243 656-1006 316-559 (901)
3 KOG1002 Nucleotide excision re 100.0 1.9E-45 4.2E-50 409.9 14.2 240 656-1004 175-450 (791)
4 KOG0385 Chromatin remodeling c 100.0 5.6E-44 1.2E-48 414.2 14.8 227 658-1007 159-390 (971)
5 KOG0387 Transcription-coupled 100.0 8.9E-44 1.9E-48 414.5 16.5 228 656-1007 196-450 (923)
6 KOG0392 SNF2 family DNA-depend 100.0 9.7E-42 2.1E-46 408.1 13.6 251 636-1006 948-1212(1549)
7 PLN03142 Probable chromatin-re 100.0 3.4E-41 7.3E-46 415.9 18.5 225 658-1006 162-391 (1033)
8 KOG0391 SNF2 family DNA-depend 100.0 2.4E-40 5.2E-45 391.5 10.6 224 660-1006 609-844 (1958)
9 KOG0388 SNF2 family DNA-depend 100.0 1.1E-39 2.4E-44 373.8 8.6 223 661-1006 562-802 (1185)
10 PF00176 SNF2_N: SNF2 family N 100.0 1.1E-37 2.4E-42 334.8 17.6 225 670-1005 1-233 (299)
11 KOG0389 SNF2 family DNA-depend 100.0 5.8E-38 1.3E-42 365.6 11.8 221 665-1006 398-633 (941)
12 KOG0386 Chromatin remodeling c 100.0 4.5E-37 9.7E-42 364.7 7.3 228 656-1006 384-626 (1157)
13 KOG1001 Helicase-like transcri 100.0 1.5E-35 3.3E-40 353.7 19.6 245 641-1005 109-354 (674)
14 KOG0390 DNA repair protein, SN 100.0 7.1E-32 1.5E-36 322.0 15.9 234 658-1005 230-486 (776)
15 KOG0298 DEAD box-containing he 100.0 2.9E-31 6.2E-36 321.4 11.0 301 664-1006 243-609 (1394)
16 COG0553 HepA Superfamily II DN 100.0 2.2E-30 4.8E-35 316.6 12.4 226 661-1005 333-581 (866)
17 KOG1015 Transcription regulato 100.0 4.3E-30 9.3E-35 301.5 10.2 238 663-1001 665-928 (1567)
18 PRK04914 ATP-dependent helicas 100.0 3.5E-28 7.5E-33 300.0 18.1 188 663-974 149-345 (956)
19 KOG1000 Chromatin remodeling p 99.9 1.9E-27 4.2E-32 267.2 13.8 214 663-1006 195-417 (689)
20 KOG1016 Predicted DNA helicase 99.9 1.2E-27 2.6E-32 276.7 8.3 260 663-1007 251-547 (1387)
21 KOG0383 Predicted helicase [Ge 99.9 4E-25 8.7E-30 262.5 1.5 304 580-1006 224-533 (696)
22 TIGR00603 rad25 DNA repair hel 99.8 1.7E-18 3.7E-23 209.0 17.1 176 664-964 253-430 (732)
23 PRK13766 Hef nuclease; Provisi 99.5 1E-13 2.2E-18 170.7 15.2 213 664-1003 13-238 (773)
24 PF04851 ResIII: Type III rest 99.5 9.2E-14 2E-18 138.6 10.7 167 665-945 2-183 (184)
25 smart00487 DEXDc DEAD-like hel 99.5 5.2E-13 1.1E-17 132.4 13.1 168 665-954 7-180 (201)
26 COG1061 SSL2 DNA or RNA helica 99.4 3E-12 6.4E-17 149.1 14.2 165 663-960 33-199 (442)
27 cd00046 DEXDc DEAD-like helica 99.4 4.8E-12 1.1E-16 118.3 12.1 137 690-944 2-144 (144)
28 PHA02558 uvsW UvsW helicase; P 99.4 8.5E-12 1.8E-16 147.3 17.0 149 664-947 112-262 (501)
29 PRK11448 hsdR type I restricti 99.1 2.9E-10 6.3E-15 144.7 13.7 111 665-838 412-524 (1123)
30 KOG1123 RNA polymerase II tran 99.1 2.2E-10 4.8E-15 130.9 7.8 170 664-960 300-472 (776)
31 TIGR00348 hsdR type I site-spe 98.9 2.3E-09 5E-14 130.9 10.5 110 663-838 235-351 (667)
32 cd00268 DEADc DEAD-box helicas 98.9 8.5E-09 1.8E-13 106.3 12.9 159 666-945 21-185 (203)
33 TIGR00643 recG ATP-dependent D 98.9 2E-08 4.3E-13 122.1 14.5 112 663-837 232-350 (630)
34 PF00270 DEAD: DEAD/DEAH box h 98.8 2.9E-08 6.2E-13 98.6 11.4 159 669-952 2-169 (169)
35 COG4096 HsdR Type I site-speci 98.7 3.2E-08 6.9E-13 119.8 10.6 162 661-946 160-322 (875)
36 PRK10917 ATP-dependent DNA hel 98.7 6.5E-08 1.4E-12 118.6 12.5 159 663-949 258-424 (681)
37 TIGR00580 mfd transcription-re 98.6 1.9E-07 4.2E-12 117.5 13.7 159 664-950 449-615 (926)
38 PRK10689 transcription-repair 98.6 2.2E-07 4.9E-12 119.2 14.1 159 664-950 598-764 (1147)
39 TIGR00614 recQ_fam ATP-depende 98.6 2.2E-07 4.7E-12 109.3 11.8 164 666-961 11-189 (470)
40 PRK11192 ATP-dependent RNA hel 98.6 6.3E-07 1.4E-11 103.8 14.7 170 666-954 23-198 (434)
41 PRK11776 ATP-dependent RNA hel 98.6 8.3E-07 1.8E-11 103.8 15.3 108 666-838 26-136 (460)
42 PRK01172 ski2-like helicase; P 98.5 1.2E-06 2.7E-11 107.2 15.4 102 665-837 21-123 (674)
43 PTZ00424 helicase 45; Provisio 98.5 9.4E-07 2E-11 100.7 13.2 158 666-946 50-213 (401)
44 COG1111 MPH1 ERCC4-like helica 98.5 1.7E-06 3.8E-11 100.5 15.0 173 665-964 14-191 (542)
45 PRK02362 ski2-like helicase; P 98.5 2E-06 4.3E-11 106.6 16.4 102 666-837 23-125 (737)
46 PRK10590 ATP-dependent RNA hel 98.5 1.2E-06 2.5E-11 102.8 13.3 112 666-837 23-137 (456)
47 PRK00254 ski2-like helicase; P 98.4 2.7E-06 5.9E-11 105.2 16.4 161 665-954 22-187 (720)
48 PLN00206 DEAD-box ATP-dependen 98.4 1.9E-06 4.2E-11 102.7 14.0 165 666-946 143-312 (518)
49 PRK11057 ATP-dependent DNA hel 98.4 1.6E-06 3.5E-11 105.2 13.2 162 666-960 25-200 (607)
50 KOG0354 DEAD-box like helicase 98.4 3.2E-06 6.9E-11 102.8 15.3 171 664-962 60-238 (746)
51 PTZ00110 helicase; Provisional 98.4 2.4E-06 5.1E-11 102.6 14.0 110 666-837 152-265 (545)
52 TIGR01389 recQ ATP-dependent D 98.4 1.5E-06 3.2E-11 105.0 12.4 160 666-958 13-186 (591)
53 PRK11634 ATP-dependent RNA hel 98.4 3.6E-06 7.8E-11 102.7 14.5 107 666-837 28-137 (629)
54 COG1200 RecG RecG-like helicas 98.3 3E-06 6.6E-11 101.8 12.7 160 663-950 259-427 (677)
55 PRK04537 ATP-dependent RNA hel 98.3 5.5E-06 1.2E-10 100.1 13.6 114 666-838 31-147 (572)
56 PRK01297 ATP-dependent RNA hel 98.3 8.2E-06 1.8E-10 96.1 14.2 113 666-837 109-225 (475)
57 COG1204 Superfamily II helicas 98.3 6.1E-06 1.3E-10 102.4 13.3 102 666-836 31-133 (766)
58 PRK04837 ATP-dependent RNA hel 98.2 5.4E-06 1.2E-10 96.1 11.7 114 666-838 30-146 (423)
59 COG4889 Predicted helicase [Ge 98.2 2.6E-06 5.7E-11 103.1 8.3 43 664-709 159-201 (1518)
60 PF13872 AAA_34: P-loop contai 98.2 9.8E-06 2.1E-10 90.2 12.2 225 657-1003 27-279 (303)
61 PRK05580 primosome assembly pr 98.2 1.2E-05 2.6E-10 99.0 14.2 104 664-836 142-252 (679)
62 COG1205 Distinct helicase fami 98.1 7.2E-06 1.6E-10 102.9 10.7 106 667-838 71-180 (851)
63 TIGR03158 cas3_cyano CRISPR-as 98.1 2.4E-05 5.2E-10 89.3 13.8 99 670-837 1-125 (357)
64 PRK13767 ATP-dependent helicas 98.1 1.8E-05 3.8E-10 100.1 13.8 114 666-838 32-159 (876)
65 PRK09401 reverse gyrase; Revie 98.0 5.2E-05 1.1E-09 98.2 15.3 105 665-838 79-192 (1176)
66 TIGR03817 DECH_helic helicase/ 98.0 4.1E-05 8.9E-10 95.2 13.9 104 666-837 36-141 (742)
67 PLN03137 ATP-dependent DNA hel 98.0 3.9E-05 8.5E-10 97.4 12.7 167 665-959 459-641 (1195)
68 TIGR00595 priA primosomal prot 97.8 6.9E-05 1.5E-09 89.5 9.8 54 779-836 27-87 (505)
69 TIGR03714 secA2 accessory Sec 97.8 0.00011 2.3E-09 90.9 11.5 59 779-838 113-177 (762)
70 COG1197 Mfd Transcription-repa 97.8 0.00019 4.1E-09 91.0 13.5 158 665-950 593-758 (1139)
71 TIGR01587 cas3_core CRISPR-ass 97.7 0.00013 2.7E-09 82.4 10.3 33 778-814 30-63 (358)
72 KOG0952 DNA/RNA helicase MER3/ 97.6 0.00025 5.4E-09 88.3 10.6 136 779-975 166-311 (1230)
73 TIGR01054 rgy reverse gyrase. 97.5 0.00024 5.3E-09 92.2 9.9 105 665-837 77-190 (1171)
74 PRK14701 reverse gyrase; Provi 97.4 0.00098 2.1E-08 88.9 13.6 104 666-837 79-190 (1638)
75 PF07652 Flavi_DEAD: Flaviviru 97.4 0.00089 1.9E-08 67.9 9.3 43 903-946 92-138 (148)
76 PHA02653 RNA helicase NPH-II; 97.4 0.0019 4.1E-08 79.8 14.0 56 778-833 223-282 (675)
77 PRK15483 type III restriction- 97.2 0.0018 3.9E-08 82.0 12.3 65 909-979 204-277 (986)
78 COG1201 Lhr Lhr-like helicases 97.2 0.0015 3.3E-08 81.5 10.9 177 665-962 21-206 (814)
79 TIGR02621 cas3_GSU0051 CRISPR- 97.2 0.0053 1.1E-07 77.1 15.1 58 780-837 65-147 (844)
80 TIGR00963 secA preprotein tran 97.0 0.00045 9.9E-09 85.2 4.2 59 779-838 99-158 (745)
81 PRK09200 preprotein translocas 96.9 0.0027 5.8E-08 79.4 9.7 56 779-838 121-181 (790)
82 PF13086 AAA_11: AAA domain; P 96.9 0.018 3.8E-07 59.7 14.3 39 666-711 1-40 (236)
83 KOG0331 ATP-dependent RNA heli 96.9 0.0043 9.3E-08 74.0 10.6 108 779-943 167-280 (519)
84 PRK12898 secA preprotein trans 96.9 0.0099 2.1E-07 73.1 13.6 106 664-840 101-207 (656)
85 PRK09694 helicase Cas3; Provis 96.8 0.0083 1.8E-07 76.2 12.1 39 665-710 285-323 (878)
86 COG0610 Type I site-specific r 96.8 0.0049 1.1E-07 79.1 10.3 47 664-710 246-295 (962)
87 COG1110 Reverse gyrase [DNA re 96.6 0.0079 1.7E-07 75.6 10.1 108 665-840 81-196 (1187)
88 KOG0350 DEAD-box ATP-dependent 96.6 0.0078 1.7E-07 70.8 9.4 117 665-839 158-284 (620)
89 PRK13104 secA preprotein trans 96.6 0.0093 2E-07 75.1 10.6 55 779-837 125-183 (896)
90 PRK09751 putative ATP-dependen 96.6 0.014 3E-07 77.4 12.4 59 779-837 39-111 (1490)
91 PRK12899 secA preprotein trans 96.5 0.019 4.2E-07 72.6 12.4 99 667-837 93-195 (970)
92 PRK12326 preprotein translocas 96.3 0.023 4.9E-07 70.4 11.4 103 663-839 75-181 (764)
93 PRK13103 secA preprotein trans 96.0 0.017 3.7E-07 72.8 8.6 58 778-839 124-185 (913)
94 PRK12904 preprotein translocas 96.0 0.038 8.3E-07 69.5 11.4 56 779-838 124-183 (830)
95 COG0513 SrmB Superfamily II DN 95.9 0.079 1.7E-06 63.9 13.4 115 780-952 102-222 (513)
96 TIGR01407 dinG_rel DnaQ family 95.8 0.058 1.3E-06 68.7 12.1 42 665-709 244-285 (850)
97 PRK13107 preprotein translocas 95.8 0.063 1.4E-06 67.9 12.1 56 779-838 125-184 (908)
98 COG4581 Superfamily II RNA hel 95.7 0.053 1.1E-06 69.4 11.0 162 663-957 116-281 (1041)
99 PRK11664 ATP-dependent RNA hel 95.6 0.15 3.2E-06 64.8 14.3 55 779-838 50-106 (812)
100 KOG0947 Cytoplasmic exosomal R 95.4 0.057 1.2E-06 67.8 9.6 99 664-840 295-394 (1248)
101 COG1203 CRISPR-associated heli 95.4 0.069 1.5E-06 67.0 10.5 44 665-711 194-237 (733)
102 COG4098 comFA Superfamily II D 95.3 0.14 3.1E-06 58.4 11.7 46 663-711 94-139 (441)
103 PF07517 SecA_DEAD: SecA DEAD- 95.3 0.062 1.3E-06 59.8 8.6 101 664-838 75-179 (266)
104 TIGR01970 DEAH_box_HrpB ATP-de 95.0 0.34 7.4E-06 61.7 15.0 23 689-711 18-40 (819)
105 COG0514 RecQ Superfamily II DN 94.9 0.12 2.6E-06 63.1 10.1 163 666-963 17-195 (590)
106 KOG1802 RNA helicase nonsense 94.8 0.17 3.6E-06 61.8 10.9 79 666-816 410-489 (935)
107 KOG0338 ATP-dependent RNA heli 94.7 0.11 2.4E-06 61.7 9.0 120 775-955 250-378 (691)
108 COG1202 Superfamily II helicas 94.7 0.24 5.2E-06 59.7 11.8 58 778-836 262-326 (830)
109 KOG0335 ATP-dependent RNA heli 94.5 0.094 2E-06 62.2 7.8 61 778-838 153-215 (482)
110 KOG0343 RNA Helicase [RNA proc 94.0 0.15 3.2E-06 61.2 8.0 62 779-841 143-206 (758)
111 PRK12906 secA preprotein trans 93.9 0.16 3.5E-06 63.9 8.7 102 664-839 78-183 (796)
112 PF02562 PhoH: PhoH-like prote 93.8 0.18 3.8E-06 54.2 7.6 57 905-963 118-179 (205)
113 COG3587 Restriction endonuclea 93.4 0.17 3.8E-06 63.1 7.4 35 909-944 208-242 (985)
114 KOG0342 ATP-dependent RNA heli 93.2 0.51 1.1E-05 56.1 10.5 120 778-954 155-280 (543)
115 PRK12902 secA preprotein trans 92.9 0.41 8.8E-06 60.8 9.8 58 778-839 127-188 (939)
116 PRK10536 hypothetical protein; 92.8 0.56 1.2E-05 52.2 9.7 40 908-949 178-217 (262)
117 KOG0330 ATP-dependent RNA heli 92.7 0.37 8.1E-06 55.9 8.4 111 779-946 131-247 (476)
118 KOG0336 ATP-dependent RNA heli 92.5 0.54 1.2E-05 54.8 9.3 120 775-952 292-415 (629)
119 KOG1132 Helicase of the DEAD s 92.1 0.55 1.2E-05 59.0 9.4 45 665-712 20-64 (945)
120 PRK11131 ATP-dependent RNA hel 91.8 1.1 2.3E-05 59.5 12.0 39 906-945 186-229 (1294)
121 CHL00122 secA preprotein trans 91.5 0.57 1.2E-05 59.4 8.7 57 778-838 118-178 (870)
122 COG0556 UvrB Helicase subunit 91.3 0.54 1.2E-05 56.5 7.8 74 670-810 16-90 (663)
123 COG1198 PriA Primosomal protei 90.7 2.5 5.5E-05 53.2 13.2 106 664-837 196-308 (730)
124 KOG0345 ATP-dependent RNA heli 90.6 1.9 4.1E-05 51.4 11.2 59 779-837 81-143 (567)
125 PRK12900 secA preprotein trans 90.4 1.4 3.1E-05 56.7 10.7 57 779-839 181-241 (1025)
126 KOG0353 ATP-dependent DNA heli 90.3 1.3 2.7E-05 51.3 9.1 56 902-957 211-273 (695)
127 KOG1513 Nuclear helicase MOP-3 90.0 0.74 1.6E-05 57.3 7.5 46 666-711 264-312 (1300)
128 KOG0348 ATP-dependent RNA heli 89.9 0.69 1.5E-05 55.6 7.0 60 780-839 214-276 (708)
129 TIGR00376 DNA helicase, putati 89.5 2.4 5.2E-05 52.8 11.7 41 665-711 156-196 (637)
130 PRK12901 secA preprotein trans 89.4 1.8 3.9E-05 56.0 10.5 57 779-839 212-273 (1112)
131 TIGR01967 DEAH_box_HrpA ATP-de 89.3 2.9 6.4E-05 55.6 12.8 40 906-945 179-222 (1283)
132 PRK10875 recD exonuclease V su 89.1 2.9 6.3E-05 51.9 11.9 48 905-954 264-318 (615)
133 KOG4284 DEAD box protein [Tran 88.8 0.91 2E-05 55.6 7.0 124 780-963 96-225 (980)
134 PRK07246 bifunctional ATP-depe 88.6 2.7 5.8E-05 53.9 11.4 42 665-709 244-285 (820)
135 PF13604 AAA_30: AAA domain; P 88.5 4 8.6E-05 43.2 10.9 39 666-709 1-39 (196)
136 TIGR01447 recD exodeoxyribonuc 88.1 3.5 7.6E-05 50.9 11.6 48 905-954 258-312 (586)
137 PRK14873 primosome assembly pr 87.9 2.4 5.2E-05 53.1 10.1 55 779-836 190-251 (665)
138 KOG0948 Nuclear exosomal RNA h 87.7 1.3 2.7E-05 55.2 7.3 40 663-709 126-165 (1041)
139 PRK12903 secA preprotein trans 87.2 2.2 4.8E-05 54.3 9.3 57 779-839 121-181 (925)
140 TIGR01448 recD_rel helicase, p 87.0 4.7 0.0001 51.0 12.1 39 906-946 416-454 (720)
141 PF02399 Herpes_ori_bp: Origin 86.0 4 8.8E-05 51.7 10.5 52 907-962 143-204 (824)
142 PRK08074 bifunctional ATP-depe 85.5 5.3 0.00012 51.9 11.8 39 665-706 256-294 (928)
143 KOG1131 RNA polymerase II tran 84.9 1.3 2.7E-05 53.3 5.2 43 667-713 17-60 (755)
144 PF09848 DUF2075: Uncharacteri 84.5 3.2 7E-05 47.6 8.4 18 694-711 7-24 (352)
145 KOG1803 DNA helicase [Replicat 83.6 0.47 1E-05 57.7 1.1 43 663-711 182-224 (649)
146 KOG0334 RNA helicase [RNA proc 83.3 2.4 5.3E-05 54.4 7.1 127 780-964 441-572 (997)
147 KOG0328 Predicted ATP-dependen 83.3 5.6 0.00012 45.0 9.0 59 902-964 165-226 (400)
148 COG0653 SecA Preprotein transl 81.6 7.9 0.00017 49.4 10.6 58 778-839 122-183 (822)
149 PRK07003 DNA polymerase III su 81.6 21 0.00045 45.6 14.1 57 906-964 119-178 (830)
150 PF05876 Terminase_GpA: Phage 81.1 7.8 0.00017 47.6 10.2 46 660-710 10-55 (557)
151 KOG0347 RNA helicase [RNA proc 81.1 2.9 6.3E-05 50.7 6.3 56 780-836 266-324 (731)
152 PHA02533 17 large terminase pr 80.9 19 0.00041 44.2 13.3 44 661-711 54-97 (534)
153 KOG0951 RNA helicase BRR2, DEA 80.7 6.5 0.00014 51.8 9.4 54 779-834 366-420 (1674)
154 KOG0339 ATP-dependent RNA heli 80.1 6.7 0.00015 47.3 8.7 57 780-837 299-358 (731)
155 TIGR00631 uvrb excinuclease AB 79.9 8.2 0.00018 48.4 10.0 69 668-802 11-80 (655)
156 KOG0333 U5 snRNP-like RNA heli 79.3 3.2 6.9E-05 50.1 5.8 57 779-836 324-383 (673)
157 PF13401 AAA_22: AAA domain; P 73.7 3 6.6E-05 39.8 3.1 35 908-944 89-125 (131)
158 KOG0340 ATP-dependent RNA heli 73.0 28 0.0006 40.8 10.8 58 780-838 78-138 (442)
159 PF06733 DEAD_2: DEAD_2; Inte 72.4 2.6 5.6E-05 43.3 2.5 17 822-838 116-132 (174)
160 PF00385 Chromo: Chromo (CHRro 69.2 0.72 1.6E-05 38.7 -2.0 26 581-606 19-44 (55)
161 KOG0351 ATP-dependent DNA heli 68.2 19 0.00042 46.9 9.3 58 907-964 386-450 (941)
162 PRK14960 DNA polymerase III su 68.0 96 0.0021 39.4 14.7 41 668-711 20-60 (702)
163 TIGR02881 spore_V_K stage V sp 67.2 15 0.00034 40.2 7.3 20 690-709 44-63 (261)
164 KOG0344 ATP-dependent RNA heli 65.4 7.2 0.00016 47.7 4.5 35 668-709 160-194 (593)
165 cd00024 CHROMO Chromatin organ 64.9 3.2 6.9E-05 34.3 1.1 26 579-604 18-43 (55)
166 PRK09112 DNA polymerase III su 62.1 96 0.0021 36.2 12.7 41 671-711 28-68 (351)
167 PRK05298 excinuclease ABC subu 61.3 40 0.00087 42.3 10.1 72 664-801 10-82 (652)
168 PRK08691 DNA polymerase III su 60.6 1.9E+02 0.004 37.1 15.4 57 906-964 119-178 (709)
169 PF12340 DUF3638: Protein of u 58.9 37 0.00079 37.5 8.1 109 664-836 21-141 (229)
170 smart00488 DEXDc2 DEAD-like he 58.5 4.7 0.0001 45.3 1.3 42 666-710 8-49 (289)
171 smart00489 DEXDc3 DEAD-like he 58.5 4.7 0.0001 45.3 1.3 42 666-710 8-49 (289)
172 TIGR03117 cas_csf4 CRISPR-asso 57.7 45 0.00098 41.9 9.6 41 778-818 47-90 (636)
173 PRK14949 DNA polymerase III su 56.8 1.2E+02 0.0025 39.9 13.0 40 906-947 119-161 (944)
174 PRK14958 DNA polymerase III su 56.0 1.9E+02 0.004 35.6 14.2 57 906-964 119-178 (509)
175 PRK14956 DNA polymerase III su 55.9 1.2E+02 0.0026 37.1 12.4 41 668-711 23-63 (484)
176 KOG1805 DNA replication helica 54.2 1.1E+02 0.0025 40.0 12.1 40 902-946 792-831 (1100)
177 PRK14961 DNA polymerase III su 54.1 1.8E+02 0.0038 33.8 13.1 21 691-711 41-61 (363)
178 TIGR00604 rad3 DNA repair heli 53.7 29 0.00064 43.8 7.3 43 666-711 10-52 (705)
179 TIGR03420 DnaA_homol_Hda DnaA 53.4 91 0.002 32.8 9.9 57 909-965 93-160 (226)
180 KOG0346 RNA helicase [RNA proc 53.4 21 0.00046 42.7 5.4 61 779-839 95-159 (569)
181 PRK14962 DNA polymerase III su 53.3 1.5E+02 0.0032 36.1 12.6 41 668-711 19-59 (472)
182 KOG0949 Predicted helicase, DE 53.3 56 0.0012 42.8 9.2 49 907-957 633-682 (1330)
183 PHA02544 44 clamp loader, smal 52.8 1.5E+02 0.0033 33.1 12.0 48 658-709 16-64 (316)
184 PF13177 DNA_pol3_delta2: DNA 50.8 3E+02 0.0064 28.3 13.1 42 671-712 2-43 (162)
185 COG1643 HrpA HrpA-like helicas 50.7 1.3E+02 0.0027 39.3 12.0 22 690-711 67-88 (845)
186 KOG0950 DNA polymerase theta/e 50.6 47 0.001 43.1 8.1 23 689-711 241-263 (1008)
187 COG0464 SpoVK ATPases of the A 49.2 32 0.00069 41.3 6.3 44 667-710 250-298 (494)
188 TIGR02880 cbbX_cfxQ probable R 48.4 45 0.00097 37.5 6.9 21 690-710 60-80 (284)
189 COG4646 DNA methylase [Transcr 48.1 11 0.00023 45.2 2.0 42 934-975 473-519 (637)
190 PRK07940 DNA polymerase III su 47.7 88 0.0019 37.1 9.5 23 689-711 37-59 (394)
191 PF13173 AAA_14: AAA domain 45.7 22 0.00049 34.6 3.6 40 908-948 63-102 (128)
192 PRK11747 dinG ATP-dependent DN 45.4 14 0.00029 46.8 2.5 42 665-706 24-67 (697)
193 PRK14964 DNA polymerase III su 44.1 3.1E+02 0.0067 33.7 13.4 40 668-710 18-57 (491)
194 PHA00673 acetyltransferase dom 44.1 35 0.00075 35.5 4.8 45 906-950 87-134 (154)
195 KOG0920 ATP-dependent RNA heli 43.8 2.1E+02 0.0045 37.7 12.4 42 664-712 171-212 (924)
196 KOG0337 ATP-dependent RNA heli 43.2 33 0.00072 41.0 4.9 108 779-944 92-205 (529)
197 PRK07994 DNA polymerase III su 40.8 3E+02 0.0066 34.9 13.0 41 668-711 21-61 (647)
198 PRK07764 DNA polymerase III su 40.7 4.2E+02 0.009 34.7 14.5 41 668-711 20-60 (824)
199 PRK12323 DNA polymerase III su 40.6 5.9E+02 0.013 32.7 15.2 57 906-964 124-183 (700)
200 PRK05707 DNA polymerase III su 40.5 2E+02 0.0044 33.2 10.7 44 666-712 3-46 (328)
201 smart00488 DEXDc2 DEAD-like he 40.3 41 0.00089 37.9 5.0 16 823-838 209-224 (289)
202 smart00489 DEXDc3 DEAD-like he 40.3 41 0.00089 37.9 5.0 16 823-838 209-224 (289)
203 TIGR03117 cas_csf4 CRISPR-asso 39.8 20 0.00043 45.0 2.7 37 671-710 2-38 (636)
204 PRK14959 DNA polymerase III su 39.1 4.4E+02 0.0095 33.5 13.9 41 668-711 21-61 (624)
205 TIGR02768 TraA_Ti Ti-type conj 38.8 1.9E+02 0.0041 37.2 11.0 39 665-709 351-389 (744)
206 PLN03025 replication factor C 38.3 66 0.0014 36.4 6.4 61 906-966 99-160 (319)
207 PRK14969 DNA polymerase III su 38.3 2.8E+02 0.006 34.2 12.0 41 668-711 21-61 (527)
208 PF13245 AAA_19: Part of AAA d 38.0 54 0.0012 29.7 4.5 21 691-711 13-33 (76)
209 CHL00181 cbbX CbbX; Provisiona 37.8 85 0.0018 35.4 7.1 20 691-710 62-81 (287)
210 KOG0952 DNA/RNA helicase MER3/ 37.3 55 0.0012 43.1 5.8 59 776-836 972-1031(1230)
211 KOG0329 ATP-dependent RNA heli 36.5 42 0.00092 37.7 4.2 59 779-837 112-173 (387)
212 KOG0926 DEAH-box RNA helicase 35.0 21 0.00045 45.5 1.7 60 890-950 356-430 (1172)
213 PRK14087 dnaA chromosomal repl 34.6 2.4E+02 0.0052 34.0 10.5 21 689-709 142-162 (450)
214 PRK05896 DNA polymerase III su 34.4 5.5E+02 0.012 32.5 13.7 41 668-711 21-61 (605)
215 smart00298 CHROMO Chromatin or 34.0 18 0.00038 29.7 0.7 24 578-601 15-38 (55)
216 TIGR00604 rad3 DNA repair heli 33.8 23 0.0005 44.7 2.0 16 822-837 192-207 (705)
217 PRK07471 DNA polymerase III su 33.1 5.4E+02 0.012 30.3 12.8 42 671-712 24-65 (365)
218 KOG0922 DEAH-box RNA helicase 31.1 36 0.00079 42.5 2.9 47 905-955 162-216 (674)
219 PRK11054 helD DNA helicase IV; 30.2 1E+02 0.0022 39.2 6.7 39 906-947 430-471 (684)
220 PRK07993 DNA polymerase III su 30.0 3.1E+02 0.0067 31.8 10.1 47 666-712 2-48 (334)
221 KOG0925 mRNA splicing factor A 29.1 44 0.00096 40.6 3.1 51 905-959 158-216 (699)
222 COG1702 PhoH Phosphate starvat 29.0 30 0.00065 40.3 1.6 40 908-949 245-284 (348)
223 COG1199 DinG Rad3-related DNA 28.1 1.5E+02 0.0033 37.0 7.6 45 664-711 13-57 (654)
224 KOG0951 RNA helicase BRR2, DEA 28.0 3.9E+02 0.0085 36.6 11.1 54 778-836 1187-1245(1674)
225 cd00133 PTS_IIB PTS_IIB: subun 26.7 1.5E+02 0.0033 25.6 5.4 52 780-834 2-55 (84)
226 PRK06871 DNA polymerase III su 25.6 5.4E+02 0.012 29.9 10.9 47 666-712 2-48 (325)
227 PRK05563 DNA polymerase III su 25.2 8.4E+02 0.018 30.4 13.1 41 668-711 21-61 (559)
228 KOG0352 ATP-dependent DNA heli 24.5 80 0.0017 38.0 4.0 56 906-961 141-203 (641)
229 cd05566 PTS_IIB_galactitol PTS 24.0 1.2E+02 0.0027 27.5 4.5 55 779-835 2-58 (89)
230 COG1875 NYN ribonuclease and A 23.8 60 0.0013 38.4 2.8 38 908-947 353-390 (436)
231 PRK00149 dnaA chromosomal repl 22.4 5.1E+02 0.011 30.9 10.4 22 689-710 149-170 (450)
232 cd05563 PTS_IIB_ascorbate PTS_ 22.0 2.3E+02 0.005 25.6 5.8 51 780-834 2-54 (86)
233 PRK04296 thymidine kinase; Pro 21.5 86 0.0019 33.0 3.3 35 906-942 78-113 (190)
234 KOG1133 Helicase of the DEAD s 21.2 42 0.00091 42.3 1.0 72 796-928 299-370 (821)
235 PF00580 UvrD-helicase: UvrD/R 21.2 1.7E+02 0.0037 31.9 5.7 40 905-947 255-295 (315)
236 PRK14965 DNA polymerase III su 21.1 1.3E+03 0.027 29.0 13.6 41 668-711 21-61 (576)
237 KOG0326 ATP-dependent RNA heli 20.4 3.9E+02 0.0085 31.4 8.2 53 780-836 156-214 (459)
No 1
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=100.00 E-value=1.1e-49 Score=478.10 Aligned_cols=341 Identities=23% Similarity=0.331 Sum_probs=281.4
Q ss_pred cCCccccccccccccccccccccccccccccccccCcccccccccccccCCCCCCCcceeecccCCCCCCccchhcccCC
Q 001825 510 YAQPSTLNKKELDGVKEDMEAEIKTRSMASHLLKLSPESIQSNSSDCKSHVDDEPDICILEDISQPARSNQSLVLGKTLS 589 (1009)
Q Consensus 510 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~ 589 (1009)
-...++|..++++|+||++||.++..++..|+. ++...|..++|.|||||.....+...+||+||.+
T Consensus 242 Wet~~~L~~~~~rG~kKv~nf~kK~~e~~~~~r-------------~E~~~~~~~dy~~VdRIia~~~~~d~eYLvKW~~ 308 (1373)
T KOG0384|consen 242 WETESELLEMNVRGLKKVDNFKKKVIEEDRWRR-------------QEREEDLNKDYVIVDRIIAEQTSKDPEYLVKWRG 308 (1373)
T ss_pred ccchHHHHhhhHHHHHHHHHHHHHHHHHHHHHH-------------hhhhhhhhhhhhhhhhhhhcccCCCceeEEEecC
Confidence 356678888999999999999999888999988 3778889999999999988777777999999999
Q ss_pred CCCccCcchhhccCCCccccccccCCCCCCCCCCCcccCCCCCCcchHHHHHHHHHHhccCCCCCCCCCCCCcccCCCch
Q 001825 590 MNRSACSNHSVALGKPVVTSQHSSYSDYPGYPGVPLTGLGGMKSKASDERLILQVAMQGISQPNAEASAPDGVLAVPLLR 669 (1009)
Q Consensus 590 ~~~~~~~~~~~~~~~p~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~er~~l~~~l~~i~~p~~e~~~P~glLkv~LrP 669 (1009)
|+|.+|+|+....+.+..+.+...|..+..-...+.....-. ..|..+.++ ...|..+-...||+
T Consensus 309 LpY~e~TWE~~~~I~~~~~~~~~~~~~Re~sk~~p~~~~~~~-----~~rp~~~Kl----------e~qp~~~~g~~LRd 373 (1373)
T KOG0384|consen 309 LPYEECTWEDAEDIAKKAQEEIEEFQSRENSKTLPNKGCKYR-----PQRPRFRKL----------EKQPEYKGGNELRD 373 (1373)
T ss_pred CCcccccccchhhhhhhHHHHHHHHhhhhccccCCCCccccC-----ccchhHHHh----------hcCccccccchhhh
Confidence 999999999999999988877777776622221222222111 122222222 23555555578999
Q ss_pred hHHHHHHHHHhccccCCCCcccEEEcCCCchHHHHHHHHHHHcCCCCCCCcchhhhhhhhcccccccccccccccccccc
Q 001825 670 HQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGIQVNGLDLVKQ 749 (1009)
Q Consensus 670 HQkegV~WMlqrE~s~~~~rGGILADEMGLGKTVqaIALIl~~r~~~~~~~~~~k~~~e~l~~de~~d~~~~~~~~~~k~ 749 (1009)
||++||+||+..+... ..||||||||||||||+|+++....
T Consensus 374 yQLeGlNWl~~~W~~~---~n~ILADEmgLgktvqti~fl~~l~------------------------------------ 414 (1373)
T KOG0384|consen 374 YQLEGLNWLLYSWYKR---NNCILADEMGLGKTVQTITFLSYLF------------------------------------ 414 (1373)
T ss_pred hhcccchhHHHHHHhc---ccceehhhcCCCcchHHHHHHHHHH------------------------------------
Confidence 9999999999988765 6799999999999999999996542
Q ss_pred ccccccccCCCCCCccchhhhhhcCCCCCcEEEEeChhhHHHHHHHHHHHhcCCCCcEEEEEcCCCCCCCc---------
Q 001825 750 ESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDP--------- 820 (1009)
Q Consensus 750 ~~~~C~~~s~~~s~~s~~~~~q~~~rpa~~TLIVcP~SLL~QW~~EI~K~~~~~~~LkVlVy~Gs~R~k~~--------- 820 (1009)
......+|.|||||.+++.+|++||..|.. +++++|+|....+..
T Consensus 415 ----------------------~~~~~~gpflvvvplst~~~W~~ef~~w~~----mn~i~y~g~~~sr~~i~~ye~~~~ 468 (1373)
T KOG0384|consen 415 ----------------------HSLQIHGPFLVVVPLSTITAWEREFETWTD----MNVIVYHGNLESRQLIRQYEFYHS 468 (1373)
T ss_pred ----------------------HhhhccCCeEEEeehhhhHHHHHHHHHHhh----hceeeeecchhHHHHHHHHHheec
Confidence 112245799999999999999999999975 999999998644321
Q ss_pred --ccccCCCEEEEehhhhhcccCCCCCCCchhHHHHhhhcCCCCCCcccccccccCCCCCCcccccccCCCCCCcchhhc
Q 001825 821 --CELAKFDVVITTYSIVSMEVPKQPLGDKEDEEEKMKIEGEDLPPMYCSSSKKRKCPPSSDRKGSKQKKGPDGLLLDIV 898 (1009)
Q Consensus 821 --~~LakyDVVITTYstLs~ev~k~~l~d~dde~ek~~~e~~~~~~~~~ssskkRK~~~~s~kk~s~~kk~~d~~~~d~~ 898 (1009)
....+++++||||+++..+.
T Consensus 469 ~~~~~lkf~~lltTye~~LkDk---------------------------------------------------------- 490 (1373)
T KOG0384|consen 469 SNTKKLKFNALLTTYEIVLKDK---------------------------------------------------------- 490 (1373)
T ss_pred CCccccccceeehhhHHHhccH----------------------------------------------------------
Confidence 22347999999999985431
Q ss_pred cCcccccceeEEEEcccccccchhhHHHHHHHhcccCeEEEEeccCCCCCHHHHHHHHHhhCCCCCCChHHHHhhhcccc
Q 001825 899 AGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAVYKSFCSMIKVPI 978 (1009)
Q Consensus 899 ~s~L~~i~W~RVILDEAH~IKN~~Sq~skAl~~L~Ak~RW~LTGTPIQNsL~DLySLLrFLrp~pf~~~~~F~~~f~~PI 978 (1009)
..|..+.|..+++||||++||..+.++..+..++..+|+++||||+||++.|||+|++||.|+.|..+..|...+
T Consensus 491 -~~L~~i~w~~~~vDeahrLkN~~~~l~~~l~~f~~~~rllitgTPlQNsikEL~sLl~Fl~P~kf~~~~~f~~~~---- 565 (1373)
T KOG0384|consen 491 -AELSKIPWRYLLVDEAHRLKNDESKLYESLNQFKMNHRLLITGTPLQNSLKELWSLLHFLMPGKFDSWDEFLEEF---- 565 (1373)
T ss_pred -hhhccCCcceeeecHHhhcCchHHHHHHHHHHhcccceeeecCCCccccHHHHHHHhcccCCCCCCcHHHHHHhh----
Confidence 238899999999999999999999999999999999999999999999999999999999999999999998887
Q ss_pred cCCchhhHHHHHHHHhhcccccccchhh
Q 001825 979 SKNPVKGYKKLQAVLKTIMLRRTKGEDC 1006 (1009)
Q Consensus 979 e~~~~~g~~rL~~vLk~~MLRRTK~dv~ 1006 (1009)
.......++.||++|+|+||||.|+||.
T Consensus 566 ~~~~e~~~~~L~~~L~P~~lRr~kkdve 593 (1373)
T KOG0384|consen 566 DEETEEQVRKLQQILKPFLLRRLKKDVE 593 (1373)
T ss_pred cchhHHHHHHHHHHhhHHHHHHHHhhhc
Confidence 3456788999999999999999999985
No 2
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=100.00 E-value=1.9e-47 Score=439.63 Aligned_cols=243 Identities=45% Similarity=0.784 Sum_probs=200.8
Q ss_pred CCCCCCcccCCCchhHHHHHHHHHhccccCCCCcccEEEcCCCchHHHHHHHHHHHcCCCCCCCcchhhhhhhhcccccc
Q 001825 656 ASAPDGVLAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEE 735 (1009)
Q Consensus 656 ~~~P~glLkv~LrPHQkegV~WMlqrE~s~~~~rGGILADEMGLGKTVqaIALIl~~r~~~~~~~~~~k~~~e~l~~de~ 735 (1009)
++.|.+ +++.|+|||+.|+.||+.||.... .|||||||||||||+++|++|+..+.. + .+ .
T Consensus 316 te~P~g-~~v~LmpHQkaal~Wl~wRE~q~~--~GGILaddmGLGKTlsmislil~qK~~--------~----~~--~-- 376 (901)
T KOG4439|consen 316 TETPDG-LKVELMPHQKAALRWLLWRESQPP--SGGILADDMGLGKTLSMISLILHQKAA--------R----KA--R-- 376 (901)
T ss_pred cCCCCc-ceeecchhhhhhhhhhcccccCCC--CCcccccccccccchHHHHHHHHHHHH--------H----Hh--h--
Confidence 445554 799999999999999999998765 899999999999999999999874310 0 00 0
Q ss_pred ccccccccccccccccccccccCCCCCCccchhhhhhcCCCCCcEEEEeChhhHHHHHHHHHHHhcCCCCcEEEEEcCCC
Q 001825 736 DNGIQVNGLDLVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSS 815 (1009)
Q Consensus 736 ~d~~~~~~~~~~k~~~~~C~~~s~~~s~~s~~~~~q~~~rpa~~TLIVcP~SLL~QW~~EI~K~~~~~~~LkVlVy~Gs~ 815 (1009)
..+...+.+||||||++|+.||..|+.+.+. ...|+|++|||.+
T Consensus 377 -----------------------------------~~~~~~a~~TLII~PaSli~qW~~Ev~~rl~-~n~LsV~~~HG~n 420 (901)
T KOG4439|consen 377 -----------------------------------EKKGESASKTLIICPASLIHQWEAEVARRLE-QNALSVYLYHGPN 420 (901)
T ss_pred -----------------------------------cccccccCCeEEeCcHHHHHHHHHHHHHHHh-hcceEEEEecCCc
Confidence 0011112259999999999999999999987 5679999999999
Q ss_pred -CCCCcccccCCCEEEEehhhhhcccCCCCCCCchhHHHHhhhcCCCCCCcccccccccCCCCCCcccccccCCCCCCcc
Q 001825 816 -RTKDPCELAKFDVVITTYSIVSMEVPKQPLGDKEDEEEKMKIEGEDLPPMYCSSSKKRKCPPSSDRKGSKQKKGPDGLL 894 (1009)
Q Consensus 816 -R~k~~~~LakyDVVITTYstLs~ev~k~~l~d~dde~ek~~~e~~~~~~~~~ssskkRK~~~~s~kk~s~~kk~~d~~~ 894 (1009)
|...+..|.+||||||||..+.+. .+++.+ .
T Consensus 421 ~r~i~~~~L~~YDvViTTY~lva~~--------~~~e~~---------------------------------~------- 452 (901)
T KOG4439|consen 421 KREISAKELRKYDVVITTYNLVANK--------PDDELE---------------------------------E------- 452 (901)
T ss_pred cccCCHHHHhhcceEEEeeeccccC--------Cchhhh---------------------------------c-------
Confidence 677888999999999999998651 111100 0
Q ss_pred hhhccCcccccceeEEEEcccccccchhhHHHHHHHhcccCeEEEEeccCCCCCHHHHHHHHHhhCCCCCCChHHHHhhh
Q 001825 895 LDIVAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAVYKSFCSMI 974 (1009)
Q Consensus 895 ~d~~~s~L~~i~W~RVILDEAH~IKN~~Sq~skAl~~L~Ak~RW~LTGTPIQNsL~DLySLLrFLrp~pf~~~~~F~~~f 974 (1009)
..-.++|.++.|.||||||||.|||++++...|++.|++..|||||||||||++-|+|+|++||+..||++++.|.+.+
T Consensus 453 -~~~~spL~~I~W~RVILDEAH~IrN~~tq~S~AVC~L~a~~RWclTGTPiqNn~~DvysLlrFLr~~pF~D~~~Wke~i 531 (901)
T KOG4439|consen 453 -GKNSSPLARIAWSRVILDEAHNIRNSNTQCSKAVCKLSAKSRWCLTGTPIQNNLWDVYSLLRFLRCPPFGDLKQWKENI 531 (901)
T ss_pred -ccCccHHHHhhHHHhhhhhhhhhcccchhHHHHHHHHhhcceeecccCccccchhHHHHHHHHhcCCCcchHHHHHHhc
Confidence 0013679999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred cccccCCchhhHHHHHHHHhhcccccccchhh
Q 001825 975 KVPISKNPVKGYKKLQAVLKTIMLRRTKGEDC 1006 (1009)
Q Consensus 975 ~~PIe~~~~~g~~rL~~vLk~~MLRRTK~dv~ 1006 (1009)
..+ ...+..||.-+.+++||||||.+++
T Consensus 532 ~~~----s~~g~~rlnll~K~LmLRRTKdQl~ 559 (901)
T KOG4439|consen 532 DNM----SKGGANRLNLLTKSLMLRRTKDQLQ 559 (901)
T ss_pred cCc----cccchhhhhhhhhhHHhhhhHHhhc
Confidence 643 3345578888999999999999886
No 3
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=100.00 E-value=1.9e-45 Score=409.87 Aligned_cols=240 Identities=47% Similarity=0.791 Sum_probs=200.5
Q ss_pred CCCCCCcccCCCchhHHHHHHHHHhccccCCCCcccEEEcCCCchHHHHHHHHHHHcCCCCCCCcchhhhhhhhcccccc
Q 001825 656 ASAPDGVLAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEE 735 (1009)
Q Consensus 656 ~~~P~glLkv~LrPHQkegV~WMlqrE~s~~~~rGGILADEMGLGKTVqaIALIl~~r~~~~~~~~~~k~~~e~l~~de~ 735 (1009)
+.+|.+ |.++|+|||+++|+|+..+|.+.. .|||||||||+|||+|+|||++..-
T Consensus 175 aeqP~d-lii~LL~fQkE~l~Wl~~QE~Ss~--~GGiLADEMGMGKTIQtIaLllae~---------------------- 229 (791)
T KOG1002|consen 175 AEQPDD-LIIPLLPFQKEGLAWLTSQEESSV--AGGILADEMGMGKTIQTIALLLAEV---------------------- 229 (791)
T ss_pred ccCccc-ceecchhhhHHHHHHHHHhhhhhh--ccceehhhhccchHHHHHHHHHhcc----------------------
Confidence 556766 678999999999999999998776 8999999999999999999997631
Q ss_pred ccccccccccccccccccccccCCCCCCccchhhhhhcCCCCCcEEEEeChhhHHHHHHHHHHHhcCCCCcEEEEEcCCC
Q 001825 736 DNGIQVNGLDLVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSS 815 (1009)
Q Consensus 736 ~d~~~~~~~~~~k~~~~~C~~~s~~~s~~s~~~~~q~~~rpa~~TLIVcP~SLL~QW~~EI~K~~~~~~~LkVlVy~Gs~ 815 (1009)
..+|||||||...+.||.+||.+|+. +.+++++|||..
T Consensus 230 ----------------------------------------~ra~tLVvaP~VAlmQW~nEI~~~T~--gslkv~~YhG~~ 267 (791)
T KOG1002|consen 230 ----------------------------------------DRAPTLVVAPTVALMQWKNEIERHTS--GSLKVYIYHGAK 267 (791)
T ss_pred ----------------------------------------ccCCeeEEccHHHHHHHHHHHHHhcc--CceEEEEEeccc
Confidence 12469999999999999999999976 789999999999
Q ss_pred CCCCcccccCCCEEEEehhhhhcccCCCCCCCchhHHHHhhhcCCCCCCcccccccccCCCCCCcccccccCCCCCCcch
Q 001825 816 RTKDPCELAKFDVVITTYSIVSMEVPKQPLGDKEDEEEKMKIEGEDLPPMYCSSSKKRKCPPSSDRKGSKQKKGPDGLLL 895 (1009)
Q Consensus 816 R~k~~~~LakyDVVITTYstLs~ev~k~~l~d~dde~ek~~~e~~~~~~~~~ssskkRK~~~~s~kk~s~~kk~~d~~~~ 895 (1009)
|.++..++..||||||||.++..++.++.. ...|| .+ .
T Consensus 268 R~~nikel~~YDvVLTty~vvEs~yRk~~~------------------------GfrrK----------------ng--v 305 (791)
T KOG1002|consen 268 RDKNIKELMNYDVVLTTYAVVESVYRKQDY------------------------GFRRK----------------NG--V 305 (791)
T ss_pred ccCCHHHhhcCcEEEEecHHHHHHHHhccc------------------------ccccc----------------CC--c
Confidence 999999999999999999999876644210 00111 01 1
Q ss_pred hhccCcccccceeEEEEcccccccchhhHHHHHHHhcccCeEEEEeccCCCCCHHHHHHHHHhhCCCCCCChH-------
Q 001825 896 DIVAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAVYK------- 968 (1009)
Q Consensus 896 d~~~s~L~~i~W~RVILDEAH~IKN~~Sq~skAl~~L~Ak~RW~LTGTPIQNsL~DLySLLrFLrp~pf~~~~------- 968 (1009)
+...++|+++.|.||||||||.||++.+.+++|++.|.+.+||||||||+||++.|||+|+|||+..||..|-
T Consensus 306 ~ke~SlLHsi~~~RiIlDEAH~IK~R~snTArAV~~L~tt~rw~LSGTPLQNrigElySLiRFL~i~Pfsyyfc~~cdc~ 385 (791)
T KOG1002|consen 306 DKEKSLLHSIKFYRIILDEAHNIKDRQSNTARAVFALETTYRWCLSGTPLQNRIGELYSLIRFLNINPFSYYFCTKCDCA 385 (791)
T ss_pred ccccchhhhceeeeeehhhhcccccccccHHHHHHhhHhhhhhhccCCcchhhHHHHHHHHHHHccCcchhhhhhhcccc
Confidence 1234679999999999999999999999999999999999999999999999999999999999999984321
Q ss_pred ------------------------HHHhhhcccccCCch-----hhHHHHHHHHhhcccccccch
Q 001825 969 ------------------------SFCSMIKVPISKNPV-----KGYKKLQAVLKTIMLRRTKGE 1004 (1009)
Q Consensus 969 ------------------------~F~~~f~~PIe~~~~-----~g~~rL~~vLk~~MLRRTK~d 1004 (1009)
.|.+...+||+.... .++...+.+|+.|||||||-.
T Consensus 386 ~~~~~ftdr~~c~~c~h~~m~h~~~~n~~mlk~IqkfG~eGpGk~af~~~h~llk~ImlrrTkl~ 450 (791)
T KOG1002|consen 386 SLDWKFTDRMHCDHCSHNIMQHTCFFNHFMLKPIQKFGVEGPGKEAFNNIHTLLKNIMLRRTKLE 450 (791)
T ss_pred ccceeecccccCCcccchhhhhhhhhcccccccchhhcccCchHHHHHHHHHHHHHHHHHHhhcc
Confidence 344445567776433 345678999999999999964
No 4
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=100.00 E-value=5.6e-44 Score=414.20 Aligned_cols=227 Identities=32% Similarity=0.507 Sum_probs=200.2
Q ss_pred CCCCcccCCCchhHHHHHHHHHhccccCCCCcccEEEcCCCchHHHHHHHHHHHcCCCCCCCcchhhhhhhhcccccccc
Q 001825 658 APDGVLAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDN 737 (1009)
Q Consensus 658 ~P~glLkv~LrPHQkegV~WMlqrE~s~~~~rGGILADEMGLGKTVqaIALIl~~r~~~~~~~~~~k~~~e~l~~de~~d 737 (1009)
.|-++....|++||++||+||+++...+ -+||||||||||||+|+||++...+
T Consensus 159 sP~~v~~g~lr~YQveGlnWLi~l~eng---ingILaDEMGLGKTlQtIs~l~yl~------------------------ 211 (971)
T KOG0385|consen 159 SPSYVKGGELRDYQLEGLNWLISLYENG---INGILADEMGLGKTLQTISLLGYLK------------------------ 211 (971)
T ss_pred CchhhcCCccchhhhccHHHHHHHHhcC---cccEeehhcccchHHHHHHHHHHHH------------------------
Confidence 6777666899999999999999998876 4699999999999999999997643
Q ss_pred ccccccccccccccccccccCCCCCCccchhhhhhcCCCCCcEEEEeChhhHHHHHHHHHHHhcCCCCcEEEEEcCCCCC
Q 001825 738 GIQVNGLDLVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRT 817 (1009)
Q Consensus 738 ~~~~~~~~~~k~~~~~C~~~s~~~s~~s~~~~~q~~~rpa~~TLIVcP~SLL~QW~~EI~K~~~~~~~LkVlVy~Gs~R~ 817 (1009)
......+|.||+||.|++.+|.+||++|+| .+++++|+|.+..
T Consensus 212 ----------------------------------~~~~~~GPfLVi~P~StL~NW~~Ef~rf~P---~l~~~~~~Gdk~e 254 (971)
T KOG0385|consen 212 ----------------------------------GRKGIPGPFLVIAPKSTLDNWMNEFKRFTP---SLNVVVYHGDKEE 254 (971)
T ss_pred ----------------------------------HhcCCCCCeEEEeeHhhHHHHHHHHHHhCC---CcceEEEeCCHHH
Confidence 112235799999999999999999999998 7999999999744
Q ss_pred C-----CcccccCCCEEEEehhhhhcccCCCCCCCchhHHHHhhhcCCCCCCcccccccccCCCCCCcccccccCCCCCC
Q 001825 818 K-----DPCELAKFDVVITTYSIVSMEVPKQPLGDKEDEEEKMKIEGEDLPPMYCSSSKKRKCPPSSDRKGSKQKKGPDG 892 (1009)
Q Consensus 818 k-----~~~~LakyDVVITTYstLs~ev~k~~l~d~dde~ek~~~e~~~~~~~~~ssskkRK~~~~s~kk~s~~kk~~d~ 892 (1009)
+ +...-..+||+||||+++.++
T Consensus 255 R~~~~r~~~~~~~fdV~iTsYEi~i~d----------------------------------------------------- 281 (971)
T KOG0385|consen 255 RAALRRDIMLPGRFDVCITSYEIAIKD----------------------------------------------------- 281 (971)
T ss_pred HHHHHHHhhccCCCceEeehHHHHHhh-----------------------------------------------------
Confidence 3 222234899999999998542
Q ss_pred cchhhccCcccccceeEEEEcccccccchhhHHHHHHHhcccCeEEEEeccCCCCCHHHHHHHHHhhCCCCCCChHHHHh
Q 001825 893 LLLDIVAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAVYKSFCS 972 (1009)
Q Consensus 893 ~~~d~~~s~L~~i~W~RVILDEAH~IKN~~Sq~skAl~~L~Ak~RW~LTGTPIQNsL~DLySLLrFLrp~pf~~~~~F~~ 972 (1009)
.+.|..+.|.++||||||+|||.++.+++.++.+.+.+|++|||||+||+|.|||+||+||-|+.|++...|..
T Consensus 282 ------k~~lk~~~W~ylvIDEaHRiKN~~s~L~~~lr~f~~~nrLLlTGTPLQNNL~ELWaLLnFllPdiF~~~e~F~s 355 (971)
T KOG0385|consen 282 ------KSFLKKFNWRYLVIDEAHRIKNEKSKLSKILREFKTDNRLLLTGTPLQNNLHELWALLNFLLPDIFNSAEDFDS 355 (971)
T ss_pred ------HHHHhcCCceEEEechhhhhcchhhHHHHHHHHhcccceeEeeCCcccccHHHHHHHHHhhchhhccCHHHHHH
Confidence 13488899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcccccCCchhhHHHHHHHHhhcccccccchhhh
Q 001825 973 MIKVPISKNPVKGYKKLQAVLKTIMLRRTKGEDCL 1007 (1009)
Q Consensus 973 ~f~~PIe~~~~~g~~rL~~vLk~~MLRRTK~dv~~ 1007 (1009)
+|......+..+.+.+|+.+|+||+|||+|.+|..
T Consensus 356 wF~~~~~~~~~e~v~~Lh~vL~pFlLRR~K~dVe~ 390 (971)
T KOG0385|consen 356 WFDFTNCEGDQELVSRLHKVLRPFLLRRIKSDVEK 390 (971)
T ss_pred HHcccccccCHHHHHHHHhhhhHHHHHHHHHhHhh
Confidence 99987777777889999999999999999999853
No 5
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]
Probab=100.00 E-value=8.9e-44 Score=414.47 Aligned_cols=228 Identities=29% Similarity=0.492 Sum_probs=193.3
Q ss_pred CCCCCCcccCCCchhHHHHHHHHHhccccCCCCcccEEEcCCCchHHHHHHHHHHHcCCCCCCCcchhhhhhhhcccccc
Q 001825 656 ASAPDGVLAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEE 735 (1009)
Q Consensus 656 ~~~P~glLkv~LrPHQkegV~WMlqrE~s~~~~rGGILADEMGLGKTVqaIALIl~~r~~~~~~~~~~k~~~e~l~~de~ 735 (1009)
..+|.. +...|+|||++||.||++..... .|||||||||||||+|+|+++.....
T Consensus 196 ~~vPg~-I~~~Lf~yQreGV~WL~~L~~q~---~GGILgDeMGLGKTIQiisFLaaL~~--------------------- 250 (923)
T KOG0387|consen 196 FKVPGF-IWSKLFPYQREGVQWLWELYCQR---AGGILGDEMGLGKTIQIISFLAALHH--------------------- 250 (923)
T ss_pred ccccHH-HHHHhhHHHHHHHHHHHHHHhcc---CCCeecccccCccchhHHHHHHHHhh---------------------
Confidence 456654 56679999999999999988765 79999999999999999999977541
Q ss_pred ccccccccccccccccccccccCCCCCCccchhhhhhcCCCCCcEEEEeChhhHHHHHHHHHHHhcCCCCcEEEEEcCCC
Q 001825 736 DNGIQVNGLDLVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSS 815 (1009)
Q Consensus 736 ~d~~~~~~~~~~k~~~~~C~~~s~~~s~~s~~~~~q~~~rpa~~TLIVcP~SLL~QW~~EI~K~~~~~~~LkVlVy~Gs~ 815 (1009)
..+..+|+|||||++|+.||.+|+++|++ .++|.+||+..
T Consensus 251 -------------------------------------S~k~~~paLIVCP~Tii~qW~~E~~~w~p---~~rv~ilh~t~ 290 (923)
T KOG0387|consen 251 -------------------------------------SGKLTKPALIVCPATIIHQWMKEFQTWWP---PFRVFILHGTG 290 (923)
T ss_pred -------------------------------------cccccCceEEEccHHHHHHHHHHHHHhCc---ceEEEEEecCC
Confidence 00223689999999999999999999998 69999999987
Q ss_pred CCC---------------CcccccCCCEEEEehhhhhcccCCCCCCCchhHHHHhhhcCCCCCCcccccccccCCCCCCc
Q 001825 816 RTK---------------DPCELAKFDVVITTYSIVSMEVPKQPLGDKEDEEEKMKIEGEDLPPMYCSSSKKRKCPPSSD 880 (1009)
Q Consensus 816 R~k---------------~~~~LakyDVVITTYstLs~ev~k~~l~d~dde~ek~~~e~~~~~~~~~ssskkRK~~~~s~ 880 (1009)
... .........|+||||+.++..
T Consensus 291 s~~r~~~~~~~~~~~~~L~r~~~~~~~ilitty~~~r~~----------------------------------------- 329 (923)
T KOG0387|consen 291 SGARYDASHSSHKKDKLLIRKVATDGGILITTYDGFRIQ----------------------------------------- 329 (923)
T ss_pred cccccccchhhhhhhhhheeeecccCcEEEEehhhhccc-----------------------------------------
Confidence 631 112223556899999988532
Q ss_pred ccccccCCCCCCcchhhccCcccccceeEEEEcccccccchhhHHHHHHHhcccCeEEEEeccCCCCCHHHHHHHHHhhC
Q 001825 881 RKGSKQKKGPDGLLLDIVAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLR 960 (1009)
Q Consensus 881 kk~s~~kk~~d~~~~d~~~s~L~~i~W~RVILDEAH~IKN~~Sq~skAl~~L~Ak~RW~LTGTPIQNsL~DLySLLrFLr 960 (1009)
...+..+.|++|||||+|+|||++++.+.+|+.++..+|++||||||||+|.|||+||.|+.
T Consensus 330 ------------------~d~l~~~~W~y~ILDEGH~IrNpns~islackki~T~~RiILSGTPiQNnL~ELwsLfDFv~ 391 (923)
T KOG0387|consen 330 ------------------GDDLLGILWDYVILDEGHRIRNPNSKISLACKKIRTVHRIILSGTPIQNNLTELWSLFDFVF 391 (923)
T ss_pred ------------------CcccccccccEEEecCcccccCCccHHHHHHHhccccceEEeeCccccchHHHHHHHhhhcc
Confidence 12377889999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCChHHHHhhhcccccCCchh---------hH---HHHHHHHhhcccccccchhhh
Q 001825 961 YDPFAVYKSFCSMIKVPISKNPVK---------GY---KKLQAVLKTIMLRRTKGEDCL 1007 (1009)
Q Consensus 961 p~pf~~~~~F~~~f~~PIe~~~~~---------g~---~rL~~vLk~~MLRRTK~dv~~ 1007 (1009)
|+.+++...|.+.|..||..+... +| ..|+.+++|+||||+|+||.-
T Consensus 392 PG~Lgt~~~F~~~f~~pI~~GgyaNAs~~qv~~aykca~~Lr~lI~PylLRR~K~dv~~ 450 (923)
T KOG0387|consen 392 PGKLGTLPVFQQNFEHPINRGGYANASPRQVQTAYKCAVALRDLISPYLLRRMKSDVKG 450 (923)
T ss_pred CCcccchHHHHhhhhhheeccccCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhh
Confidence 999999999999999999886532 23 357889999999999999863
No 6
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=100.00 E-value=9.7e-42 Score=408.13 Aligned_cols=251 Identities=31% Similarity=0.490 Sum_probs=203.1
Q ss_pred hHHHHHHHHHHhccCCCCCCCCCCCCcccCCCchhHHHHHHHHHhccccCCCCcccEEEcCCCchHHHHHHHHHHHcCCC
Q 001825 636 SDERLILQVAMQGISQPNAEASAPDGVLAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKERPP 715 (1009)
Q Consensus 636 ~~er~~l~~~l~~i~~p~~e~~~P~glLkv~LrPHQkegV~WMlqrE~s~~~~rGGILADEMGLGKTVqaIALIl~~r~~ 715 (1009)
++||..+..++..-..+. ..+|-. +++.||.||.+||+|+.-..+-.+ .||||||||||||+|+|+.++.....
T Consensus 948 e~erkFLeqlldpski~~--y~Ip~p-I~a~LRkYQqEGVnWLaFLnky~L---HGILcDDMGLGKTLQticilAsd~y~ 1021 (1549)
T KOG0392|consen 948 EEERKFLEQLLDPSKIPE--YKIPVP-ISAKLRKYQQEGVNWLAFLNKYKL---HGILCDDMGLGKTLQTICILASDHYK 1021 (1549)
T ss_pred HHHHHHHHHhcCcccCCc--cccccc-hhHHHHHHHHhccHHHHHHHHhcc---cceeeccccccHHHHHHHHHHHHHHh
Confidence 455666655554433332 334433 468899999999999998766554 58999999999999999999753210
Q ss_pred CCCCcchhhhhhhhccccccccccccccccccccccccccccCCCCCCccchhhhhhcCCCCCcEEEEeChhhHHHHHHH
Q 001825 716 SFRTEDDNKRQLETLNLDEEDNGIQVNGLDLVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTSVLRQWAEE 795 (1009)
Q Consensus 716 ~~~~~~~~k~~~e~l~~de~~d~~~~~~~~~~k~~~~~C~~~s~~~s~~s~~~~~q~~~rpa~~TLIVcP~SLL~QW~~E 795 (1009)
. +..... -...|.|||||.+|..+|+.|
T Consensus 1022 r-------------------------------~s~~~e---------------------~~~~PSLIVCPsTLtGHW~~E 1049 (1549)
T KOG0392|consen 1022 R-------------------------------RSESSE---------------------FNRLPSLIVCPSTLTGHWKSE 1049 (1549)
T ss_pred h-------------------------------cccchh---------------------hccCCeEEECCchhhhHHHHH
Confidence 0 000000 112478999999999999999
Q ss_pred HHHHhcCCCCcEEEEEcCCC--CCCCcccccCCCEEEEehhhhhcccCCCCCCCchhHHHHhhhcCCCCCCccccccccc
Q 001825 796 LRNKVTSKGSLSVLVYHGSS--RTKDPCELAKFDVVITTYSIVSMEVPKQPLGDKEDEEEKMKIEGEDLPPMYCSSSKKR 873 (1009)
Q Consensus 796 I~K~~~~~~~LkVlVy~Gs~--R~k~~~~LakyDVVITTYstLs~ev~k~~l~d~dde~ek~~~e~~~~~~~~~ssskkR 873 (1009)
+.+++| .|+|+.|.|.. |........+++|+||+|+++++++.
T Consensus 1050 ~~kf~p---fL~v~~yvg~p~~r~~lR~q~~~~~iiVtSYDv~RnD~d-------------------------------- 1094 (1549)
T KOG0392|consen 1050 VKKFFP---FLKVLQYVGPPAERRELRDQYKNANIIVTSYDVVRNDVD-------------------------------- 1094 (1549)
T ss_pred HHHhcc---hhhhhhhcCChHHHHHHHhhccccceEEeeHHHHHHHHH--------------------------------
Confidence 999998 49999999876 44455667789999999999976542
Q ss_pred CCCCCCcccccccCCCCCCcchhhccCcccccceeEEEEcccccccchhhHHHHHHHhcccCeEEEEeccCCCCCHHHHH
Q 001825 874 KCPPSSDRKGSKQKKGPDGLLLDIVAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLY 953 (1009)
Q Consensus 874 K~~~~s~kk~s~~kk~~d~~~~d~~~s~L~~i~W~RVILDEAH~IKN~~Sq~skAl~~L~Ak~RW~LTGTPIQNsL~DLy 953 (1009)
.|.++.|.++||||+|-|||.+++.+++++.|++.+|++||||||||++.|||
T Consensus 1095 ---------------------------~l~~~~wNYcVLDEGHVikN~ktkl~kavkqL~a~hRLILSGTPIQNnvleLW 1147 (1549)
T KOG0392|consen 1095 ---------------------------YLIKIDWNYCVLDEGHVIKNSKTKLTKAVKQLRANHRLILSGTPIQNNVLELW 1147 (1549)
T ss_pred ---------------------------HHHhcccceEEecCcceecchHHHHHHHHHHHhhcceEEeeCCCcccCHHHHH
Confidence 16788999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhCCCCCCChHHHHhhhcccccC------------CchhhHHHHHHHHhhcccccccchhh
Q 001825 954 SYFRFLRYDPFAVYKSFCSMIKVPISK------------NPVKGYKKLQAVLKTIMLRRTKGEDC 1006 (1009)
Q Consensus 954 SLLrFLrp~pf~~~~~F~~~f~~PIe~------------~~~~g~~rL~~vLk~~MLRRTK~dv~ 1006 (1009)
+||.||.|+.+++.+.|.++|.+||-. ....+++.||+.+-||||||+|+||.
T Consensus 1148 SLFdFLMPGfLGtEKqFqsrf~kpI~asRd~K~Sske~EaG~lAleaLHKqVLPF~LRRlKedVL 1212 (1549)
T KOG0392|consen 1148 SLFDFLMPGFLGTEKQFQSRFGKPILASRDPKSSSKEQEAGVLALEALHKQVLPFLLRRLKEDVL 1212 (1549)
T ss_pred HHHHHhcccccCcHHHHHHHhcchhhhhcCcccchhHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999953 12345788999999999999999984
No 7
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=100.00 E-value=3.4e-41 Score=415.88 Aligned_cols=225 Identities=27% Similarity=0.471 Sum_probs=191.5
Q ss_pred CCCCcccCCCchhHHHHHHHHHhccccCCCCcccEEEcCCCchHHHHHHHHHHHcCCCCCCCcchhhhhhhhcccccccc
Q 001825 658 APDGVLAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDN 737 (1009)
Q Consensus 658 ~P~glLkv~LrPHQkegV~WMlqrE~s~~~~rGGILADEMGLGKTVqaIALIl~~r~~~~~~~~~~k~~~e~l~~de~~d 737 (1009)
.|.. ++..|+|||++||+||+.....+ .|||||||||||||+|+|+++...+.
T Consensus 162 qP~~-i~~~Lr~YQleGlnWLi~l~~~g---~gGILADEMGLGKTlQaIalL~~L~~----------------------- 214 (1033)
T PLN03142 162 QPSC-IKGKMRDYQLAGLNWLIRLYENG---INGILADEMGLGKTLQTISLLGYLHE----------------------- 214 (1033)
T ss_pred CChH-hccchHHHHHHHHHHHHHHHhcC---CCEEEEeCCCccHHHHHHHHHHHHHH-----------------------
Confidence 4544 55789999999999999876543 68999999999999999999965320
Q ss_pred ccccccccccccccccccccCCCCCCccchhhhhhcCCCCCcEEEEeChhhHHHHHHHHHHHhcCCCCcEEEEEcCCCCC
Q 001825 738 GIQVNGLDLVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRT 817 (1009)
Q Consensus 738 ~~~~~~~~~~k~~~~~C~~~s~~~s~~s~~~~~q~~~rpa~~TLIVcP~SLL~QW~~EI~K~~~~~~~LkVlVy~Gs~R~ 817 (1009)
.....+|+|||||++++.||.+||.+|++ .+++++|+|....
T Consensus 215 -----------------------------------~~~~~gp~LIVvP~SlL~nW~~Ei~kw~p---~l~v~~~~G~~~e 256 (1033)
T PLN03142 215 -----------------------------------YRGITGPHMVVAPKSTLGNWMNEIRRFCP---VLRAVKFHGNPEE 256 (1033)
T ss_pred -----------------------------------hcCCCCCEEEEeChHHHHHHHHHHHHHCC---CCceEEEeCCHHH
Confidence 01224689999999999999999999987 6899999998643
Q ss_pred CCc-----ccccCCCEEEEehhhhhcccCCCCCCCchhHHHHhhhcCCCCCCcccccccccCCCCCCcccccccCCCCCC
Q 001825 818 KDP-----CELAKFDVVITTYSIVSMEVPKQPLGDKEDEEEKMKIEGEDLPPMYCSSSKKRKCPPSSDRKGSKQKKGPDG 892 (1009)
Q Consensus 818 k~~-----~~LakyDVVITTYstLs~ev~k~~l~d~dde~ek~~~e~~~~~~~~~ssskkRK~~~~s~kk~s~~kk~~d~ 892 (1009)
+.. ....++|||||||+++.++.
T Consensus 257 R~~~~~~~~~~~~~dVvITSYe~l~~e~---------------------------------------------------- 284 (1033)
T PLN03142 257 RAHQREELLVAGKFDVCVTSFEMAIKEK---------------------------------------------------- 284 (1033)
T ss_pred HHHHHHHHhcccCCCcceecHHHHHHHH----------------------------------------------------
Confidence 211 12357999999999985421
Q ss_pred cchhhccCcccccceeEEEEcccccccchhhHHHHHHHhcccCeEEEEeccCCCCCHHHHHHHHHhhCCCCCCChHHHHh
Q 001825 893 LLLDIVAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAVYKSFCS 972 (1009)
Q Consensus 893 ~~~d~~~s~L~~i~W~RVILDEAH~IKN~~Sq~skAl~~L~Ak~RW~LTGTPIQNsL~DLySLLrFLrp~pf~~~~~F~~ 972 (1009)
..|..+.|++|||||||+|||..++++++++.|.+++||+|||||+||++.|||+||+||.|+.|+....|..
T Consensus 285 -------~~L~k~~W~~VIvDEAHrIKN~~Sklskalr~L~a~~RLLLTGTPlqNnl~ELwsLL~FL~P~~f~s~~~F~~ 357 (1033)
T PLN03142 285 -------TALKRFSWRYIIIDEAHRIKNENSLLSKTMRLFSTNYRLLITGTPLQNNLHELWALLNFLLPEIFSSAETFDE 357 (1033)
T ss_pred -------HHhccCCCCEEEEcCccccCCHHHHHHHHHHHhhcCcEEEEecCCCCCCHHHHHHHHhcCCCCcCCCHHHHHH
Confidence 1266778999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcccccCCchhhHHHHHHHHhhcccccccchhh
Q 001825 973 MIKVPISKNPVKGYKKLQAVLKTIMLRRTKGEDC 1006 (1009)
Q Consensus 973 ~f~~PIe~~~~~g~~rL~~vLk~~MLRRTK~dv~ 1006 (1009)
+|..+........+.+|+.+|++|||||+|.+|.
T Consensus 358 ~f~~~~~~~~~e~i~~L~~~L~pf~LRR~KsdV~ 391 (1033)
T PLN03142 358 WFQISGENDQQEVVQQLHKVLRPFLLRRLKSDVE 391 (1033)
T ss_pred HHccccccchHHHHHHHHHHhhHHHhhhhHHHHh
Confidence 9988766666677899999999999999999984
No 8
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=100.00 E-value=2.4e-40 Score=391.55 Aligned_cols=224 Identities=34% Similarity=0.528 Sum_probs=193.5
Q ss_pred CCcccCCCchhHHHHHHHHHhccccCCCCcccEEEcCCCchHHHHHHHHHHHcCCCCCCCcchhhhhhhhcccccccccc
Q 001825 660 DGVLAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGI 739 (1009)
Q Consensus 660 ~glLkv~LrPHQkegV~WMlqrE~s~~~~rGGILADEMGLGKTVqaIALIl~~r~~~~~~~~~~k~~~e~l~~de~~d~~ 739 (1009)
+.+|+..||.||+.|+.||...+... -+||||||||||||||+|+|+++.-
T Consensus 609 PsLLrGqLReYQkiGLdWLatLYekn---lNGILADEmGLGKTIQtISllAhLA-------------------------- 659 (1958)
T KOG0391|consen 609 PSLLRGQLREYQKIGLDWLATLYEKN---LNGILADEMGLGKTIQTISLLAHLA-------------------------- 659 (1958)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHhc---ccceehhhhcccchhHHHHHHHHHH--------------------------
Confidence 45788899999999999999998876 4799999999999999999997632
Q ss_pred ccccccccccccccccccCCCCCCccchhhhhhcCCCCCcEEEEeChhhHHHHHHHHHHHhcCCCCcEEEEEcCCCCCCC
Q 001825 740 QVNGLDLVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKD 819 (1009)
Q Consensus 740 ~~~~~~~~k~~~~~C~~~s~~~s~~s~~~~~q~~~rpa~~TLIVcP~SLL~QW~~EI~K~~~~~~~LkVlVy~Gs~R~k~ 819 (1009)
|. ...-+|.|||||.+++.+|+-||++|++ .++++-|.|..+.+.
T Consensus 660 --------------Ce------------------egnWGPHLIVVpTsviLnWEMElKRwcP---glKILTYyGs~kErk 704 (1958)
T KOG0391|consen 660 --------------CE------------------EGNWGPHLIVVPTSVILNWEMELKRWCP---GLKILTYYGSHKERK 704 (1958)
T ss_pred --------------hc------------------ccCCCCceEEeechhhhhhhHHHhhhCC---cceEeeecCCHHHHH
Confidence 11 1123589999999999999999999998 699999999976543
Q ss_pred c--ccc---cCCCEEEEehhhhhcccCCCCCCCchhHHHHhhhcCCCCCCcccccccccCCCCCCcccccccCCCCCCcc
Q 001825 820 P--CEL---AKFDVVITTYSIVSMEVPKQPLGDKEDEEEKMKIEGEDLPPMYCSSSKKRKCPPSSDRKGSKQKKGPDGLL 894 (1009)
Q Consensus 820 ~--~~L---akyDVVITTYstLs~ev~k~~l~d~dde~ek~~~e~~~~~~~~~ssskkRK~~~~s~kk~s~~kk~~d~~~ 894 (1009)
. ..| ..|.|.||+|..+.+..
T Consensus 705 eKRqgW~kPnaFHVCItSYklv~qd~------------------------------------------------------ 730 (1958)
T KOG0391|consen 705 EKRQGWAKPNAFHVCITSYKLVFQDL------------------------------------------------------ 730 (1958)
T ss_pred HHhhcccCCCeeEEeehhhHHHHhHH------------------------------------------------------
Confidence 2 223 45889999999986532
Q ss_pred hhhccCcccccceeEEEEcccccccchhhHHHHHHHhcccCeEEEEeccCCCCCHHHHHHHHHhhCCCCCCChHHHHhhh
Q 001825 895 LDIVAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAVYKSFCSMI 974 (1009)
Q Consensus 895 ~d~~~s~L~~i~W~RVILDEAH~IKN~~Sq~skAl~~L~Ak~RW~LTGTPIQNsL~DLySLLrFLrp~pf~~~~~F~~~f 974 (1009)
..|.+.+|.++||||||+|||.+++.++++..+++.+|++|||||+||+|.|||+|++||.|..|.+...|..+|
T Consensus 731 -----~AFkrkrWqyLvLDEaqnIKnfksqrWQAllnfnsqrRLLLtgTPLqNslmELWSLmhFLmP~~f~shd~fk~wf 805 (1958)
T KOG0391|consen 731 -----TAFKRKRWQYLVLDEAQNIKNFKSQRWQALLNFNSQRRLLLTGTPLQNSLMELWSLMHFLMPQTFASHDIFKPWF 805 (1958)
T ss_pred -----HHHHhhccceeehhhhhhhcchhHHHHHHHhccchhheeeecCCchhhHHHHHHHHHHHhhchhhhhhhhHHHHh
Confidence 126677899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCc-------hhhHHHHHHHHhhcccccccchhh
Q 001825 975 KVPISKNP-------VKGYKKLQAVLKTIMLRRTKGEDC 1006 (1009)
Q Consensus 975 ~~PIe~~~-------~~g~~rL~~vLk~~MLRRTK~dv~ 1006 (1009)
..|+..-. .+-+.|||++|++|+|||+|.||.
T Consensus 806 snPltgmiEgsqeyn~klV~RLHkVlrPfiLRRlK~dVE 844 (1958)
T KOG0391|consen 806 SNPLTGMIEGSQEYNHKLVIRLHKVLRPFILRRLKRDVE 844 (1958)
T ss_pred cCcchhhcccchhhchHHHHHHHHHhHHHHHHHHHHHHH
Confidence 99986532 345689999999999999999985
No 9
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Probab=100.00 E-value=1.1e-39 Score=373.83 Aligned_cols=223 Identities=34% Similarity=0.531 Sum_probs=192.9
Q ss_pred CcccCCCchhHHHHHHHHHhccccCCCCcccEEEcCCCchHHHHHHHHHHHcCCCCCCCcchhhhhhhhccccccccccc
Q 001825 661 GVLAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGIQ 740 (1009)
Q Consensus 661 glLkv~LrPHQkegV~WMlqrE~s~~~~rGGILADEMGLGKTVqaIALIl~~r~~~~~~~~~~k~~~e~l~~de~~d~~~ 740 (1009)
.+++.+|+.||+.|++|++.....+ -.||||||||||||||+|++++++- |.
T Consensus 562 kil~ctLKEYQlkGLnWLvnlYdqG---iNGILADeMGLGKTVQsisvlAhLa--------------E~----------- 613 (1185)
T KOG0388|consen 562 KILKCTLKEYQLKGLNWLVNLYDQG---INGILADEMGLGKTVQSISVLAHLA--------------ET----------- 613 (1185)
T ss_pred hhhhhhhHHHhhccHHHHHHHHHcc---ccceehhhhccchhHHHHHHHHHHH--------------Hh-----------
Confidence 4678999999999999999988765 3699999999999999999997642 00
Q ss_pred cccccccccccccccccCCCCCCccchhhhhhcCCCCCcEEEEeChhhHHHHHHHHHHHhcCCCCcEEEEEcCCCCCCCc
Q 001825 741 VNGLDLVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDP 820 (1009)
Q Consensus 741 ~~~~~~~k~~~~~C~~~s~~~s~~s~~~~~q~~~rpa~~TLIVcP~SLL~QW~~EI~K~~~~~~~LkVlVy~Gs~R~k~~ 820 (1009)
...-+|.|||+|+++|.+|++||.+|+| .++++-|-|....+..
T Consensus 614 ---------------------------------~nIwGPFLVVtpaStL~NWaqEisrFlP---~~k~lpywGs~~eRki 657 (1185)
T KOG0388|consen 614 ---------------------------------HNIWGPFLVVTPASTLHNWAQEISRFLP---SFKVLPYWGSPSERKI 657 (1185)
T ss_pred ---------------------------------ccCCCceEEeehHHHHhHHHHHHHHhCc---cceeecCcCChhhhHH
Confidence 1123689999999999999999999998 7999999998644321
Q ss_pred -----------ccccCCCEEEEehhhhhcccCCCCCCCchhHHHHhhhcCCCCCCcccccccccCCCCCCcccccccCCC
Q 001825 821 -----------CELAKFDVVITTYSIVSMEVPKQPLGDKEDEEEKMKIEGEDLPPMYCSSSKKRKCPPSSDRKGSKQKKG 889 (1009)
Q Consensus 821 -----------~~LakyDVVITTYstLs~ev~k~~l~d~dde~ek~~~e~~~~~~~~~ssskkRK~~~~s~kk~s~~kk~ 889 (1009)
...+.++||||||..+..+ +
T Consensus 658 LrKfw~rKnmY~rna~fhVviTSYQlvVtD-----------e-------------------------------------- 688 (1185)
T KOG0388|consen 658 LRKFWNRKNMYRRNAPFHVVITSYQLVVTD-----------E-------------------------------------- 688 (1185)
T ss_pred HHHhcchhhhhccCCCceEEEEeeeeeech-----------H--------------------------------------
Confidence 2346789999999987432 1
Q ss_pred CCCcchhhccCcccccceeEEEEcccccccchhhHHHHHHHhcccCeEEEEeccCCCCCHHHHHHHHHhhCCCCCCChHH
Q 001825 890 PDGLLLDIVAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAVYKS 969 (1009)
Q Consensus 890 ~d~~~~d~~~s~L~~i~W~RVILDEAH~IKN~~Sq~skAl~~L~Ak~RW~LTGTPIQNsL~DLySLLrFLrp~pf~~~~~ 969 (1009)
.-|.++.|.+.||||||.||...|.+++.+..++++.|++||||||||+..|||+||+|+.|..|++-.+
T Consensus 689 ----------ky~qkvKWQYMILDEAQAIKSSsS~RWKtLLsF~cRNRLLLTGTPIQNsMqELWALLHFIMPsLFDshne 758 (1185)
T KOG0388|consen 689 ----------KYLQKVKWQYMILDEAQAIKSSSSSRWKTLLSFKCRNRLLLTGTPIQNSMQELWALLHFIMPSLFDSHNE 758 (1185)
T ss_pred ----------HHHHhhhhhheehhHHHHhhhhhhhHHHHHhhhhccceeeecCCccchHHHHHHHHHHHHhhHhhhchHH
Confidence 1178899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhcccccCC-------chhhHHHHHHHHhhcccccccchhh
Q 001825 970 FCSMIKVPISKN-------PVKGYKKLQAVLKTIMLRRTKGEDC 1006 (1009)
Q Consensus 970 F~~~f~~PIe~~-------~~~g~~rL~~vLk~~MLRRTK~dv~ 1006 (1009)
|.++|.+-|+.. ..+.++|||++|+||||||.|++|.
T Consensus 759 FseWFSKdIEshAe~~~tlneqqL~RLH~ILKPFMLRRvKkdV~ 802 (1185)
T KOG0388|consen 759 FSEWFSKDIESHAEMNTTLNEQQLQRLHAILKPFMLRRVKKDVI 802 (1185)
T ss_pred HHHHHhhhhHhHHHhcCCcCHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 999999988764 3456899999999999999999984
No 10
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=100.00 E-value=1.1e-37 Score=334.76 Aligned_cols=225 Identities=41% Similarity=0.652 Sum_probs=175.5
Q ss_pred hHHHHHHHHHhcc------ccCCCCcccEEEcCCCchHHHHHHHHHHHcCCCCCCCcchhhhhhhhcccccccccccccc
Q 001825 670 HQRIALSWMVQKE------TSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGIQVNG 743 (1009)
Q Consensus 670 HQkegV~WMlqrE------~s~~~~rGGILADEMGLGKTVqaIALIl~~r~~~~~~~~~~k~~~e~l~~de~~d~~~~~~ 743 (1009)
||++||.||+.++ ......+|||||||||||||+++|+++.....
T Consensus 1 ~Q~~~v~~m~~~~~~~~~~~~~~~~~g~lL~de~GlGKT~~~i~~~~~l~~----------------------------- 51 (299)
T PF00176_consen 1 HQLEAVRWMLDRELVEEYPNSESPPRGGLLADEMGLGKTITAIALISYLKN----------------------------- 51 (299)
T ss_dssp HHHHHHHHHHHHH----TTSSSTTT-EEEE---TTSSHHHHHHHHHHHHHH-----------------------------
T ss_pred CHHHHHHHHHHHhhhhcccccccCCCCEEEEECCCCCchhhhhhhhhhhhh-----------------------------
Confidence 8999999999998 11223489999999999999999999964210
Q ss_pred ccccccccccccccCCCCCCccchhhhhhcCCCCCcEEEEeChhhHHHHHHHHHHHhcCCCCcEEEEEcCCC--CCCCcc
Q 001825 744 LDLVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSS--RTKDPC 821 (1009)
Q Consensus 744 ~~~~k~~~~~C~~~s~~~s~~s~~~~~q~~~rpa~~TLIVcP~SLL~QW~~EI~K~~~~~~~LkVlVy~Gs~--R~k~~~ 821 (1009)
.......+++|||||++++.||..||.+|+. +..+++++++|.. +.....
T Consensus 52 ---------------------------~~~~~~~~~~LIv~P~~l~~~W~~E~~~~~~-~~~~~v~~~~~~~~~~~~~~~ 103 (299)
T PF00176_consen 52 ---------------------------EFPQRGEKKTLIVVPSSLLSQWKEEIEKWFD-PDSLRVIIYDGDSERRRLSKN 103 (299)
T ss_dssp ---------------------------CCTTSS-S-EEEEE-TTTHHHHHHHHHHHSG-T-TS-EEEESSSCHHHHTTSS
T ss_pred ---------------------------ccccccccceeEeeccchhhhhhhhhccccc-ccccccccccccccccccccc
Confidence 0011112369999999999999999999985 3367999999987 333455
Q ss_pred cccCCCEEEEehhhhhcccCCCCCCCchhHHHHhhhcCCCCCCcccccccccCCCCCCcccccccCCCCCCcchhhccCc
Q 001825 822 ELAKFDVVITTYSIVSMEVPKQPLGDKEDEEEKMKIEGEDLPPMYCSSSKKRKCPPSSDRKGSKQKKGPDGLLLDIVAGP 901 (1009)
Q Consensus 822 ~LakyDVVITTYstLs~ev~k~~l~d~dde~ek~~~e~~~~~~~~~ssskkRK~~~~s~kk~s~~kk~~d~~~~d~~~s~ 901 (1009)
....+++||+||+.+..... ......
T Consensus 104 ~~~~~~vvi~ty~~~~~~~~------------------------------------------------------~~~~~~ 129 (299)
T PF00176_consen 104 QLPKYDVVITTYETLRKARK------------------------------------------------------KKDKED 129 (299)
T ss_dssp SCCCSSEEEEEHHHHH--TS------------------------------------------------------THTTHH
T ss_pred ccccceeeeccccccccccc------------------------------------------------------cccccc
Confidence 67899999999999961000 000122
Q ss_pred ccccceeEEEEcccccccchhhHHHHHHHhcccCeEEEEeccCCCCCHHHHHHHHHhhCCCCCCChHHHHhhhcccccCC
Q 001825 902 LAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAVYKSFCSMIKVPISKN 981 (1009)
Q Consensus 902 L~~i~W~RVILDEAH~IKN~~Sq~skAl~~L~Ak~RW~LTGTPIQNsL~DLySLLrFLrp~pf~~~~~F~~~f~~PIe~~ 981 (1009)
+..+.|++||+||+|.+||..++.++++..|++++||+|||||++|++.|||++++||.++.+.....|.+.+..+....
T Consensus 130 l~~~~~~~vIvDEaH~~k~~~s~~~~~l~~l~~~~~~lLSgTP~~n~~~dl~~~l~~L~~~~~~~~~~f~~~~~~~~~~~ 209 (299)
T PF00176_consen 130 LKQIKWDRVIVDEAHRLKNKDSKRYKALRKLRARYRWLLSGTPIQNSLEDLYSLLRFLNPDPFSDRRSFKKWFYRPDKEN 209 (299)
T ss_dssp HHTSEEEEEEETTGGGGTTTTSHHHHHHHCCCECEEEEE-SS-SSSGSHHHHHHHHHHCTTTCSSHHHHHHHTHHHHHTH
T ss_pred cccccceeEEEecccccccccccccccccccccceEEeeccccccccccccccchheeeccccccchhhhhhhhhhcccc
Confidence 56678999999999999999999999999999999999999999999999999999999999999999999987774455
Q ss_pred chhhHHHHHHHHhhcccccccchh
Q 001825 982 PVKGYKKLQAVLKTIMLRRTKGED 1005 (1009)
Q Consensus 982 ~~~g~~rL~~vLk~~MLRRTK~dv 1005 (1009)
......+|..+|+.+|+||+++++
T Consensus 210 ~~~~~~~L~~~l~~~~~r~~~~d~ 233 (299)
T PF00176_consen 210 SYENIERLRELLSEFMIRRTKKDV 233 (299)
T ss_dssp HHHHHHHHHHHHCCCEECHCGGGG
T ss_pred ccccccccccccchhhhhhhcccc
Confidence 667788999999999999999998
No 11
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=100.00 E-value=5.8e-38 Score=365.62 Aligned_cols=221 Identities=28% Similarity=0.443 Sum_probs=179.2
Q ss_pred CCCchhHHHHHHHHHhccccCCCCcccEEEcCCCchHHHHHHHHHHHcCCCCCCCcchhhhhhhhccccccccccccccc
Q 001825 665 VPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGIQVNGL 744 (1009)
Q Consensus 665 v~LrPHQkegV~WMlqrE~s~~~~rGGILADEMGLGKTVqaIALIl~~r~~~~~~~~~~k~~~e~l~~de~~d~~~~~~~ 744 (1009)
++|.+||+.||+|+.-.....+ .||||||||||||+|+||++..++
T Consensus 398 i~LkdYQlvGvNWL~Llyk~~l---~gILADEMGLGKTiQvIaFlayLk------------------------------- 443 (941)
T KOG0389|consen 398 IQLKDYQLVGVNWLLLLYKKKL---NGILADEMGLGKTIQVIAFLAYLK------------------------------- 443 (941)
T ss_pred CcccchhhhhHHHHHHHHHccc---cceehhhccCcchhHHHHHHHHHH-------------------------------
Confidence 6799999999999998777654 579999999999999999997653
Q ss_pred cccccccccccccCCCCCCccchhhhhhcCCCCCcEEEEeChhhHHHHHHHHHHHhcCCCCcEEEEEcCCCCCCC-----
Q 001825 745 DLVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKD----- 819 (1009)
Q Consensus 745 ~~~k~~~~~C~~~s~~~s~~s~~~~~q~~~rpa~~TLIVcP~SLL~QW~~EI~K~~~~~~~LkVlVy~Gs~R~k~----- 819 (1009)
+....+|.|||||.|++.+|.+||++|+| .|+|..|+|+...+.
T Consensus 444 ----------------------------q~g~~gpHLVVvPsSTleNWlrEf~kwCP---sl~Ve~YyGSq~ER~~lR~~ 492 (941)
T KOG0389|consen 444 ----------------------------QIGNPGPHLVVVPSSTLENWLREFAKWCP---SLKVEPYYGSQDERRELRER 492 (941)
T ss_pred ----------------------------HcCCCCCcEEEecchhHHHHHHHHHHhCC---ceEEEeccCcHHHHHHHHHH
Confidence 11225789999999999999999999998 799999999963321
Q ss_pred -cccccCCCEEEEehhhhhcccCCCCCCCchhHHHHhhhcCCCCCCcccccccccCCCCCCcccccccCCCCCCcchhhc
Q 001825 820 -PCELAKFDVVITTYSIVSMEVPKQPLGDKEDEEEKMKIEGEDLPPMYCSSSKKRKCPPSSDRKGSKQKKGPDGLLLDIV 898 (1009)
Q Consensus 820 -~~~LakyDVVITTYstLs~ev~k~~l~d~dde~ek~~~e~~~~~~~~~ssskkRK~~~~s~kk~s~~kk~~d~~~~d~~ 898 (1009)
...-.+|||++|||..+..- ++|
T Consensus 493 i~~~~~~ydVllTTY~la~~~--------kdD------------------------------------------------ 516 (941)
T KOG0389|consen 493 IKKNKDDYDVLLTTYNLAASS--------KDD------------------------------------------------ 516 (941)
T ss_pred HhccCCCccEEEEEeecccCC--------hHH------------------------------------------------
Confidence 11123899999999987521 111
Q ss_pred cCcccccceeEEEEcccccccchhhHHHHHHHhcccCeEEEEeccCCCCCHHHHHHHHHhhCCCCCCCh-HHHHhhhccc
Q 001825 899 AGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAVY-KSFCSMIKVP 977 (1009)
Q Consensus 899 ~s~L~~i~W~RVILDEAH~IKN~~Sq~skAl~~L~Ak~RW~LTGTPIQNsL~DLySLLrFLrp~pf~~~-~~F~~~f~~P 977 (1009)
...|....|++||.||+|++||..|.+++.+..++|++|++|||||+||+|.||++||.|+.|..|... ..+...|..-
T Consensus 517 Rsflk~~~~n~viyDEgHmLKN~~SeRy~~LM~I~An~RlLLTGTPLQNNL~ELiSLL~FvlP~vF~~~~~dl~~if~~k 596 (941)
T KOG0389|consen 517 RSFLKNQKFNYVIYDEGHMLKNRTSERYKHLMSINANFRLLLTGTPLQNNLKELISLLAFVLPKVFDSSMEDLDVIFKAK 596 (941)
T ss_pred HHHHHhccccEEEecchhhhhccchHHHHHhccccccceEEeeCCcccccHHHHHHHHHHHhhHhhhccchHHHHHHhcc
Confidence 234788899999999999999999999999999999999999999999999999999999999999753 4455555432
Q ss_pred cc-CCc-------hhhHHHHHHHHhhcccccccchhh
Q 001825 978 IS-KNP-------VKGYKKLQAVLKTIMLRRTKGEDC 1006 (1009)
Q Consensus 978 Ie-~~~-------~~g~~rL~~vLk~~MLRRTK~dv~ 1006 (1009)
-. .++ .+.+.|-..+++||+|||.|.+|.
T Consensus 597 ~~~d~d~e~~~l~qerIsrAK~im~PFILRR~K~qVL 633 (941)
T KOG0389|consen 597 KTSDGDIENALLSQERISRAKTIMKPFILRRLKSQVL 633 (941)
T ss_pred CCccchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 11 111 234566778999999999999984
No 12
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=100.00 E-value=4.5e-37 Score=364.70 Aligned_cols=228 Identities=31% Similarity=0.500 Sum_probs=195.8
Q ss_pred CCCCCCcccCCCchhHHHHHHHHHhccccCCCCcccEEEcCCCchHHHHHHHHHHHcCCCCCCCcchhhhhhhhcccccc
Q 001825 656 ASAPDGVLAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEE 735 (1009)
Q Consensus 656 ~~~P~glLkv~LrPHQkegV~WMlqrE~s~~~~rGGILADEMGLGKTVqaIALIl~~r~~~~~~~~~~k~~~e~l~~de~ 735 (1009)
..+|..+...+|++||+.||.||+......+ .||||||||||||+|+|++|....
T Consensus 384 ~~Qps~l~GG~Lk~YQl~GLqWmVSLyNNnL---NGILADEMGLGKTIQtIsLitYLm---------------------- 438 (1157)
T KOG0386|consen 384 AKQPSSLQGGELKEYQLHGLQWMVSLYNNNL---NGILADEMGLGKTIQTISLITYLM---------------------- 438 (1157)
T ss_pred ccCcchhcCCCCchhhhhhhHHHhhccCCCc---ccccchhcccchHHHHHHHHHHHH----------------------
Confidence 4567766677899999999999999887764 699999999999999999997642
Q ss_pred ccccccccccccccccccccccCCCCCCccchhhhhhcCCCCCcEEEEeChhhHHHHHHHHHHHhcCCCCcEEEEEcCCC
Q 001825 736 DNGIQVNGLDLVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSS 815 (1009)
Q Consensus 736 ~d~~~~~~~~~~k~~~~~C~~~s~~~s~~s~~~~~q~~~rpa~~TLIVcP~SLL~QW~~EI~K~~~~~~~LkVlVy~Gs~ 815 (1009)
......+|.|||||.++|.+|..||.+|.| .+..++|.|..
T Consensus 439 ------------------------------------E~K~~~GP~LvivPlstL~NW~~Ef~kWaP---Sv~~i~YkGtp 479 (1157)
T KOG0386|consen 439 ------------------------------------EHKQMQGPFLIIVPLSTLVNWSSEFPKWAP---SVQKIQYKGTP 479 (1157)
T ss_pred ------------------------------------HHcccCCCeEEeccccccCCchhhcccccc---ceeeeeeeCCH
Confidence 011234789999999999999999999987 79999999986
Q ss_pred CCCC----cccccCCCEEEEehhhhhcccCCCCCCCchhHHHHhhhcCCCCCCcccccccccCCCCCCcccccccCCCCC
Q 001825 816 RTKD----PCELAKFDVVITTYSIVSMEVPKQPLGDKEDEEEKMKIEGEDLPPMYCSSSKKRKCPPSSDRKGSKQKKGPD 891 (1009)
Q Consensus 816 R~k~----~~~LakyDVVITTYstLs~ev~k~~l~d~dde~ek~~~e~~~~~~~~~ssskkRK~~~~s~kk~s~~kk~~d 891 (1009)
..+. .....+|+|++|||+.+..+
T Consensus 480 ~~R~~l~~qir~gKFnVLlTtyEyiikd---------------------------------------------------- 507 (1157)
T KOG0386|consen 480 QQRSGLTKQQRHGKFNVLLTTYEYIIKD---------------------------------------------------- 507 (1157)
T ss_pred HHHhhHHHHHhcccceeeeeeHHHhcCC----------------------------------------------------
Confidence 4432 22237999999999987431
Q ss_pred CcchhhccCcccccceeEEEEcccccccchhhHHHHHHH-hcccCeEEEEeccCCCCCHHHHHHHHHhhCCCCCCChHHH
Q 001825 892 GLLLDIVAGPLAKVGWFRVVLDEAQSIKNHRTQVARACW-GLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAVYKSF 970 (1009)
Q Consensus 892 ~~~~d~~~s~L~~i~W~RVILDEAH~IKN~~Sq~skAl~-~L~Ak~RW~LTGTPIQNsL~DLySLLrFLrp~pf~~~~~F 970 (1009)
...|.+|.|.++||||+|++||..++++..+. ..++.+|++|||||+||++.|||+||+||-|..|.+...|
T Consensus 508 -------k~lLsKI~W~yMIIDEGHRmKNa~~KLt~~L~t~y~~q~RLLLTGTPLQN~LpELWaLLNFlLP~IFnS~~~F 580 (1157)
T KOG0386|consen 508 -------KALLSKISWKYMIIDEGHRMKNAICKLTDTLNTHYRAQRRLLLTGTPLQNNLPELWALLNFLLPNIFNSCKAF 580 (1157)
T ss_pred -------HHHHhccCCcceeecccccccchhhHHHHHhhccccchhhhhhcCChhhhccHHHHHHHHHhccchhhhHhHH
Confidence 12388999999999999999999999999998 6689999999999999999999999999999999999999
Q ss_pred HhhhcccccCCch----------hhHHHHHHHHhhcccccccchhh
Q 001825 971 CSMIKVPISKNPV----------KGYKKLQAVLKTIMLRRTKGEDC 1006 (1009)
Q Consensus 971 ~~~f~~PIe~~~~----------~g~~rL~~vLk~~MLRRTK~dv~ 1006 (1009)
..+|..||...+. -.++|||+||+||+|||.|++|.
T Consensus 581 eqWFN~PFantGek~eLteEEtlLIIrRLHkVLRPFlLRRlKkeVE 626 (1157)
T KOG0386|consen 581 EQWFNQPFANTGEKVELTEEETLLIIRRLHKVLRPFLLRRLKKEVE 626 (1157)
T ss_pred HHHhhhhhhhcCCcccccchHHHHHHHHHHHhhhHHHHHhhhHHHh
Confidence 9999999976552 13689999999999999999884
No 13
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=100.00 E-value=1.5e-35 Score=353.73 Aligned_cols=245 Identities=48% Similarity=0.774 Sum_probs=208.7
Q ss_pred HHHHHHhccCCCCCCCCCCCCcccCCCchhHHHHHHHHHhccccCCCCcccEEEcCCCchHHHHHHHHHHHcCCCCCCCc
Q 001825 641 ILQVAMQGISQPNAEASAPDGVLAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTE 720 (1009)
Q Consensus 641 ~l~~~l~~i~~p~~e~~~P~glLkv~LrPHQkegV~WMlqrE~s~~~~rGGILADEMGLGKTVqaIALIl~~r~~~~~~~ 720 (1009)
++.++...+.+...+...|.+.++++ |+....||+...+....++||||||+||||||+++|++++..+....
T Consensus 109 i~~~~~~~~~~~~~~~~~~~~~~~~p----~~~~~~~~~~~~~~~~~~~ggIladd~glgkt~~ti~l~l~~~~~~~--- 181 (674)
T KOG1001|consen 109 IFKAAKWEIILYKANKISPKNTLRFP----LKQKYRWSLLKSREQQSLRGGILADDMGLGKTVKTIALILKQKLKSK--- 181 (674)
T ss_pred hhhhhhhhhhhhhhhccCCcccccCC----HHHHHHHHhhcccccCccccceEeeccccchHHHHHHHHHhcccCCc---
Confidence 33444433445555666777666666 66677777777777777899999999999999999999987652100
Q ss_pred chhhhhhhhccccccccccccccccccccccccccccCCCCCCccchhhhhhcCCCCCcEEEEeChhhHHHHHHHHHHHh
Q 001825 721 DDNKRQLETLNLDEEDNGIQVNGLDLVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTSVLRQWAEELRNKV 800 (1009)
Q Consensus 721 ~~~k~~~e~l~~de~~d~~~~~~~~~~k~~~~~C~~~s~~~s~~s~~~~~q~~~rpa~~TLIVcP~SLL~QW~~EI~K~~ 800 (1009)
+ ..+....+.+|||||.+++.||..|+ ...
T Consensus 182 -------~------------------------------------------~~~~~~~kttLivcp~s~~~qW~~el-ek~ 211 (674)
T KOG1001|consen 182 -------E------------------------------------------EDRQKEFKTTLIVCPTSLLTQWKTEL-EKV 211 (674)
T ss_pred -------c------------------------------------------hhhccccCceeEecchHHHHHHHHHH-hcc
Confidence 0 00223467899999999999999999 666
Q ss_pred cCCCCcEEEEEcCCCCCCCcccccCCCEEEEehhhhhcccCCCCCCCchhHHHHhhhcCCCCCCcccccccccCCCCCCc
Q 001825 801 TSKGSLSVLVYHGSSRTKDPCELAKFDVVITTYSIVSMEVPKQPLGDKEDEEEKMKIEGEDLPPMYCSSSKKRKCPPSSD 880 (1009)
Q Consensus 801 ~~~~~LkVlVy~Gs~R~k~~~~LakyDVVITTYstLs~ev~k~~l~d~dde~ek~~~e~~~~~~~~~ssskkRK~~~~s~ 880 (1009)
...+.+.+++||| |.++..++.+||||||||.++..
T Consensus 212 ~~~~~l~v~v~~g--r~kd~~el~~~dVVltTy~il~~------------------------------------------ 247 (674)
T KOG1001|consen 212 TEEDKLSIYVYHG--RTKDKSELNSYDVVLTTYDILKN------------------------------------------ 247 (674)
T ss_pred CCccceEEEEecc--cccccchhcCCceEEeeHHHhhc------------------------------------------
Confidence 7788999999999 88899999999999999999842
Q ss_pred ccccccCCCCCCcchhhccCcccccceeEEEEcccccccchhhHHHHHHHhcccCeEEEEeccCCCCCHHHHHHHHHhhC
Q 001825 881 RKGSKQKKGPDGLLLDIVAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLR 960 (1009)
Q Consensus 881 kk~s~~kk~~d~~~~d~~~s~L~~i~W~RVILDEAH~IKN~~Sq~skAl~~L~Ak~RW~LTGTPIQNsL~DLySLLrFLr 960 (1009)
.+|..+.|.|||+||||.|+|++++.+++++.|++.+||||||||+||+++|||++++||+
T Consensus 248 -------------------~~l~~i~w~Riildea~~ikn~~tq~~~a~~~L~a~~RWcLtgtPiqn~~~~lysl~~fl~ 308 (674)
T KOG1001|consen 248 -------------------SPLVKIKWLRIVLDEAHTIKNKDTQIFKAVCQLDAKYRWCLTGTPIQNNLDELYSLFKFLE 308 (674)
T ss_pred -------------------ccccceeEEEEEeccccccCCcchHhhhhheeeccceeeeecCChhhhhHHHHHHHHHHhh
Confidence 2477899999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCChHHHHhhhcccccCCc-hhhHHHHHHHHhhcccccccchh
Q 001825 961 YDPFAVYKSFCSMIKVPISKNP-VKGYKKLQAVLKTIMLRRTKGED 1005 (1009)
Q Consensus 961 p~pf~~~~~F~~~f~~PIe~~~-~~g~~rL~~vLk~~MLRRTK~dv 1005 (1009)
.+||..+..|...+..|+.++. .+++++++.+|+.+||||||...
T Consensus 309 ~~p~~~~~~~~~~i~~p~~~~~~~~~~k~l~~~L~~v~lrrtK~~~ 354 (674)
T KOG1001|consen 309 IHPYCDQNYFKLLIQDPDERNKYKEGVKTLQGILKKVMLRRTKEME 354 (674)
T ss_pred cCCchhhHHHHHHhcChhhhhhHHHHHHHHHHHHHHHHhccccccc
Confidence 9999999999999999999998 89999999999999999999743
No 14
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=99.97 E-value=7.1e-32 Score=321.97 Aligned_cols=234 Identities=24% Similarity=0.348 Sum_probs=187.7
Q ss_pred CCCCcccCCCchhHHHHHHHHHhccccCC---CCcccEEEcCCCchHHHHHHHHHHHcCCCCCCCcchhhhhhhhccccc
Q 001825 658 APDGVLAVPLLRHQRIALSWMVQKETSSL---HCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDE 734 (1009)
Q Consensus 658 ~P~glLkv~LrPHQkegV~WMlqrE~s~~---~~rGGILADEMGLGKTVqaIALIl~~r~~~~~~~~~~k~~~e~l~~de 734 (1009)
.++..++..|||||++|+.||+....... ...|||+||+||+|||+++|++|....
T Consensus 230 ~~dP~l~~~LrPHQ~EG~~FL~knl~g~~~~~~~~GCImAd~~GlGKTlq~IsflwtlL--------------------- 288 (776)
T KOG0390|consen 230 VIDPLLKKILRPHQREGFEFLYKNLAGLIRPKNSGGCIMADEPGLGKTLQCISFIWTLL--------------------- 288 (776)
T ss_pred EecccHhhhcCchHHHHHHHHHhhhhcccccCCCCceEeeCCCCcchHHHHHHHHHHHH---------------------
Confidence 34456788899999999999998876652 457999999999999999999996532
Q ss_pred cccccccccccccccccccccccCCCCCCccchhhhhhcCCCCCcEEEEeChhhHHHHHHHHHHHhcCCCCcEEEEEcCC
Q 001825 735 EDNGIQVNGLDLVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGS 814 (1009)
Q Consensus 735 ~~d~~~~~~~~~~k~~~~~C~~~s~~~s~~s~~~~~q~~~rpa~~TLIVcP~SLL~QW~~EI~K~~~~~~~LkVlVy~Gs 814 (1009)
++.|..+ +.+...|||||.+|+.+|++||.+|.. ...+..+.+.+.
T Consensus 289 -------------rq~P~~~--------------------~~~~k~lVV~P~sLv~nWkkEF~KWl~-~~~i~~l~~~~~ 334 (776)
T KOG0390|consen 289 -------------RQFPQAK--------------------PLINKPLVVAPSSLVNNWKKEFGKWLG-NHRINPLDFYST 334 (776)
T ss_pred -------------HhCcCcc--------------------ccccccEEEccHHHHHHHHHHHHHhcc-ccccceeeeecc
Confidence 2221111 124568999999999999999999976 357888888887
Q ss_pred CCCC---------CcccccCCCEEEEehhhhhcccCCCCCCCchhHHHHhhhcCCCCCCcccccccccCCCCCCcccccc
Q 001825 815 SRTK---------DPCELAKFDVVITTYSIVSMEVPKQPLGDKEDEEEKMKIEGEDLPPMYCSSSKKRKCPPSSDRKGSK 885 (1009)
Q Consensus 815 ~R~k---------~~~~LakyDVVITTYstLs~ev~k~~l~d~dde~ek~~~e~~~~~~~~~ssskkRK~~~~s~kk~s~ 885 (1009)
.... .....-.+-|.|.+|++++..+.
T Consensus 335 ~~~~w~~~~sil~~~~~~~~~~vli~sye~~~~~~~-------------------------------------------- 370 (776)
T KOG0390|consen 335 KKSSWIKLKSILFLGYKQFTTPVLIISYETASDYCR-------------------------------------------- 370 (776)
T ss_pred cchhhhhhHHHHHhhhhheeEEEEeccHHHHHHHHH--------------------------------------------
Confidence 6641 01112234578888888863321
Q ss_pred cCCCCCCcchhhccCcccccceeEEEEcccccccchhhHHHHHHHhcccCeEEEEeccCCCCCHHHHHHHHHhhCCCCCC
Q 001825 886 QKKGPDGLLLDIVAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFA 965 (1009)
Q Consensus 886 ~kk~~d~~~~d~~~s~L~~i~W~RVILDEAH~IKN~~Sq~skAl~~L~Ak~RW~LTGTPIQNsL~DLySLLrFLrp~pf~ 965 (1009)
.+....+++||+||+|++||..+++++++..|..++|++||||||||++.|+|++|.|.+|+.++
T Consensus 371 ---------------~il~~~~glLVcDEGHrlkN~~s~~~kaL~~l~t~rRVLLSGTp~QNdl~EyFnlL~fvrP~~Lg 435 (776)
T KOG0390|consen 371 ---------------KILLIRPGLLVCDEGHRLKNSDSLTLKALSSLKTPRRVLLTGTPIQNDLKEYFNLLDFVRPGFLG 435 (776)
T ss_pred ---------------HHhcCCCCeEEECCCCCccchhhHHHHHHHhcCCCceEEeeCCcccccHHHHHHHHhhcChhhcc
Confidence 15566788999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHhhhcccccCCch-----------hhHHHHHHHHhhcccccccchh
Q 001825 966 VYKSFCSMIKVPISKNPV-----------KGYKKLQAVLKTIMLRRTKGED 1005 (1009)
Q Consensus 966 ~~~~F~~~f~~PIe~~~~-----------~g~~rL~~vLk~~MLRRTK~dv 1005 (1009)
....|.+.+..|+.++.. ..+++|..+...|++|||-..+
T Consensus 436 s~~sf~k~~~~~i~~~~~~~~s~e~~~~~~rl~eL~~~t~~fi~rrt~~il 486 (776)
T KOG0390|consen 436 SISSFKKKFEIPILRGRDADASEEDREREERLQELRELTNKFILRRTGDIL 486 (776)
T ss_pred chHHHHHHhhcccccccCCCcchhhhhhHHHHHHHHHHHHhheeecccchh
Confidence 999999999999977322 2266788999999999998433
No 15
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=99.97 E-value=2.9e-31 Score=321.40 Aligned_cols=301 Identities=29% Similarity=0.440 Sum_probs=207.8
Q ss_pred cCCCchhHHHHHHHHHhccccC--------------------------------------CCCcccEEEcCCCchHHHHH
Q 001825 664 AVPLLRHQRIALSWMVQKETSS--------------------------------------LHCSGGILADDQGLGKTIST 705 (1009)
Q Consensus 664 kv~LrPHQkegV~WMlqrE~s~--------------------------------------~~~rGGILADEMGLGKTVqa 705 (1009)
.-.|++||.+.+.||..++..- ..+.||.+||+||||||++-
T Consensus 243 ~~~~r~~~~r~~~~~~~~~~e~~~~s~~~It~~~~~di~~~~~~~l~~~~~~~~~~l~~e~l~~~~t~~de~gl~k~~E~ 322 (1394)
T KOG0298|consen 243 QSQLRKYQQRTVSWMPSREQEYTQVSANFITLHLIDDITRVFKLKLCFQFYSFEEELPKESLSPGGTLADEMGLGKTVEF 322 (1394)
T ss_pred hhhccHHHHHHHHhccccchhhhhccccccccccccchHHHhhhccceecccccccchhccCCCcchHHHHhhhHHHHHH
Confidence 3468999999999999888621 13578999999999999999
Q ss_pred HHHHHHcCCCCCC--Ccchhhhhhhhccccc-----------------ccc---ccccccccccccccccccccCCCC--
Q 001825 706 IALILKERPPSFR--TEDDNKRQLETLNLDE-----------------EDN---GIQVNGLDLVKQESDYCRVVPNGS-- 761 (1009)
Q Consensus 706 IALIl~~r~~~~~--~~~~~k~~~e~l~~de-----------------~~d---~~~~~~~~~~k~~~~~C~~~s~~~-- 761 (1009)
+|++..++.+... .....+.+......-+ -.. +....+.+.-+.....|-......
T Consensus 323 ~a~~~~n~~p~~~~~~s~~~~~~~~~~~~~e~~~~r~nq~~~~~~~~~~~~g~~~~~ade~~~qk~~~~l~~~l~~~~k~ 402 (1394)
T KOG0298|consen 323 LAMLTSNRRPPDSYRNSYLHQRLEEYSDEVELKRSRINQKDEVLCSGDKKHGKRVQCADEMGWQKTSEKLILELSDLPKL 402 (1394)
T ss_pred HHHHhccCCCcccccchHHHHHHHHHhhhhHhHHhHhhhhhHHhhcCCccCCcceeehhhhhccchHHHHHHHHhccccc
Confidence 9999887754222 2222221111111000 000 011111111110000000000000
Q ss_pred --CCccchhhhhhcCCCCCcEEEEeChhhHHHHHHHHHHHhcCCCCcEEEEEcCCCCCC--CcccccCCCEEEEehhhhh
Q 001825 762 --SAKSFNFVEQAKGRPAAGTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTK--DPCELAKFDVVITTYSIVS 837 (1009)
Q Consensus 762 --s~~s~~~~~q~~~rpa~~TLIVcP~SLL~QW~~EI~K~~~~~~~LkVlVy~Gs~R~k--~~~~LakyDVVITTYstLs 837 (1009)
.+-+.....-......++||||||.+++.||-.||.+|++. .++|+.|.|..... .+.++..||||+|||++++
T Consensus 403 ~~~~cS~~~~e~~n~~~tgaTLII~P~aIl~QW~~EI~kH~~~--~lKv~~Y~Girk~~~~~~~el~~yDIVlTtYdiLr 480 (1394)
T KOG0298|consen 403 CPSCCSELVKEGENLVETGATLIICPNAILMQWFEEIHKHISS--LLKVLLYFGIRKTFWLSPFELLQYDIVLTTYDILR 480 (1394)
T ss_pred chhhhhHHHhcccceeecCceEEECcHHHHHHHHHHHHHhccc--cceEEEEechhhhcccCchhhhccCEEEeehHHHH
Confidence 00000111112234568999999999999999999999873 37999999987543 4577899999999999999
Q ss_pred cccCCCCCCCchhHHHHhhhcCCCCCCcccccccccCCCCCCcccccccCCCCCCcchhhccCcccccceeEEEEccccc
Q 001825 838 MEVPKQPLGDKEDEEEKMKIEGEDLPPMYCSSSKKRKCPPSSDRKGSKQKKGPDGLLLDIVAGPLAKVGWFRVVLDEAQS 917 (1009)
Q Consensus 838 ~ev~k~~l~d~dde~ek~~~e~~~~~~~~~ssskkRK~~~~s~kk~s~~kk~~d~~~~d~~~s~L~~i~W~RVILDEAH~ 917 (1009)
.|+...... . ..++.+.+.++. .+.+||..+.||||||||||+
T Consensus 481 ~El~hte~~---------------~--~~R~lR~qsr~~--------------------~~~SPL~~v~wWRIclDEaQM 523 (1394)
T KOG0298|consen 481 NELYHTEDF---------------G--SDRQLRHQSRYM--------------------RPNSPLLMVNWWRICLDEAQM 523 (1394)
T ss_pred hHhhccccc---------------C--ChhhhhcccCCC--------------------CCCCchHHHHHHHHhhhHHHh
Confidence 887542100 0 000111111111 135789999999999999999
Q ss_pred ccchhhHHHHHHHhcccCeEEEEeccCCCCCHHHHHHHHHhhCCCCCCChHHHHhhhcccccCCchhhHHHHHHHHhhcc
Q 001825 918 IKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIM 997 (1009)
Q Consensus 918 IKN~~Sq~skAl~~L~Ak~RW~LTGTPIQNsL~DLySLLrFLrp~pf~~~~~F~~~f~~PIe~~~~~g~~rL~~vLk~~M 997 (1009)
+....|+.++++..|++.+|||+||||||+ ++||+.||.||+..||+...+|.+++..++..+ .....+.++++..|
T Consensus 524 vesssS~~a~M~~rL~~in~W~VTGTPiq~-Iddl~~Ll~fLk~~Pf~~~~~~iq~v~~~~~~r--a~~~~~~dl~~q~l 600 (1394)
T KOG0298|consen 524 VESSSSAAAEMVRRLHAINRWCVTGTPIQK-IDDLFPLLEFLKLPPFCRPQDFIQTVDKAYQLR--AKCEPLLDLFKQLL 600 (1394)
T ss_pred hcchHHHHHHHHHHhhhhceeeecCCchhh-hhhhHHHHHHhcCCCCCChHHHHHHHHHHHHHH--hhhhhHHHHHHhhh
Confidence 999999999999999999999999999999 999999999999999999999999999888776 45567899999999
Q ss_pred cccccchhh
Q 001825 998 LRRTKGEDC 1006 (1009)
Q Consensus 998 LRRTK~dv~ 1006 (1009)
+|+.|.+|+
T Consensus 601 ~R~~k~~v~ 609 (1394)
T KOG0298|consen 601 WRTFKSKVE 609 (1394)
T ss_pred hhhhhHHHH
Confidence 999998775
No 16
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=99.96 E-value=2.2e-30 Score=316.63 Aligned_cols=226 Identities=37% Similarity=0.560 Sum_probs=185.1
Q ss_pred CcccCCCchhHHHHHHHHHh-ccccCCCCcccEEEcCCCchHHHHHHHHHHHcCCCCCCCcchhhhhhhhcccccccccc
Q 001825 661 GVLAVPLLRHQRIALSWMVQ-KETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGI 739 (1009)
Q Consensus 661 glLkv~LrPHQkegV~WMlq-rE~s~~~~rGGILADEMGLGKTVqaIALIl~~r~~~~~~~~~~k~~~e~l~~de~~d~~ 739 (1009)
..+...|++||.+|+.||.. ..... .|||||||||||||+|+|+++.....
T Consensus 333 ~~~~~~lr~yq~~g~~wl~~~l~~~~---~~~ilaD~mglGKTiq~i~~l~~~~~------------------------- 384 (866)
T COG0553 333 VDLSAELRPYQLEGVNWLSELLRSNL---LGGILADDMGLGKTVQTIALLLSLLE------------------------- 384 (866)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHhcc---CCCcccccccchhHHHHHHHHHhhhh-------------------------
Confidence 44567799999999999994 33322 79999999999999999999965210
Q ss_pred ccccccccccccccccccCCCCCCccchhhhhhcCCCCCcEEEEeChhhHHHHHHHHHHHhcCCCCcE-EEEEcCCCCC-
Q 001825 740 QVNGLDLVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTSVLRQWAEELRNKVTSKGSLS-VLVYHGSSRT- 817 (1009)
Q Consensus 740 ~~~~~~~~k~~~~~C~~~s~~~s~~s~~~~~q~~~rpa~~TLIVcP~SLL~QW~~EI~K~~~~~~~Lk-VlVy~Gs~R~- 817 (1009)
......++.|||||.+++.+|.+|+.+|.+ .++ +.+++|....
T Consensus 385 --------------------------------~~~~~~~~~liv~p~s~~~nw~~e~~k~~~---~~~~~~~~~g~~~~~ 429 (866)
T COG0553 385 --------------------------------SIKVYLGPALIVVPASLLSNWKREFEKFAP---DLRLVLVYHGEKSEL 429 (866)
T ss_pred --------------------------------cccCCCCCeEEEecHHHHHHHHHHHhhhCc---cccceeeeeCCcccc
Confidence 000114589999999999999999999977 577 9999998752
Q ss_pred ----CCcccccC------CCEEEEehhhhhcccCCCCCCCchhHHHHhhhcCCCCCCcccccccccCCCCCCcccccccC
Q 001825 818 ----KDPCELAK------FDVVITTYSIVSMEVPKQPLGDKEDEEEKMKIEGEDLPPMYCSSSKKRKCPPSSDRKGSKQK 887 (1009)
Q Consensus 818 ----k~~~~Lak------yDVVITTYstLs~ev~k~~l~d~dde~ek~~~e~~~~~~~~~ssskkRK~~~~s~kk~s~~k 887 (1009)
.....+.+ +++++|||+.+....
T Consensus 430 ~~~~~~~~~~~~~~~~~~~~v~itty~~l~~~~----------------------------------------------- 462 (866)
T COG0553 430 DKKREALRDLLKLHLVIIFDVVITTYELLRRFL----------------------------------------------- 462 (866)
T ss_pred cHHHHHHHHHhhhcccceeeEEechHHHHHHhh-----------------------------------------------
Confidence 22223333 899999999996521
Q ss_pred CCCCCcchhhccCcccccceeEEEEcccccccchhhHHHHHHHhcccCeEEEEeccCCCCCHHHHHHHHH-hhCCCCCC-
Q 001825 888 KGPDGLLLDIVAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFR-FLRYDPFA- 965 (1009)
Q Consensus 888 k~~d~~~~d~~~s~L~~i~W~RVILDEAH~IKN~~Sq~skAl~~L~Ak~RW~LTGTPIQNsL~DLySLLr-FLrp~pf~- 965 (1009)
.....+..+.|+++|+||||+|||..+..+++++.+++.+||+|||||++|++.|||++++ |+.|..++
T Consensus 463 ---------~~~~~l~~~~~~~~v~DEa~~ikn~~s~~~~~l~~~~~~~~~~LtgTPlen~l~eL~sl~~~f~~p~~~~~ 533 (866)
T COG0553 463 ---------VDHGGLKKIEWDRVVLDEAHRIKNDQSSEGKALQFLKALNRLDLTGTPLENRLGELWSLLQEFLNPGLLGT 533 (866)
T ss_pred ---------hhHHHHhhceeeeeehhhHHHHhhhhhHHHHHHHHHhhcceeeCCCChHhhhHHHHHHHHHHHhCCccccc
Confidence 0012377889999999999999999999999999999999999999999999999999999 99999999
Q ss_pred ChHHHHhhhcccccCCch--------hhHHHHHHHHhhcccccccchh
Q 001825 966 VYKSFCSMIKVPISKNPV--------KGYKKLQAVLKTIMLRRTKGED 1005 (1009)
Q Consensus 966 ~~~~F~~~f~~PIe~~~~--------~g~~rL~~vLk~~MLRRTK~dv 1005 (1009)
....|...|..|+..... ....+|++++++++|||+|.++
T Consensus 534 ~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~f~lrr~k~~~ 581 (866)
T COG0553 534 SFAIFTRLFEKPIQAEEDIGPLEARELGIELLRKLLSPFILRRTKEDV 581 (866)
T ss_pred hHHHHHHHHhhhhhhcccccchhhHHHHHHHHHHHHHHHhhcccccch
Confidence 568999999999877553 3455688999999999999993
No 17
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription]
Probab=99.96 E-value=4.3e-30 Score=301.50 Aligned_cols=238 Identities=27% Similarity=0.359 Sum_probs=177.5
Q ss_pred ccCCCchhHHHHHHHHHhccc------cCCCCcccEEEcCCCchHHHHHHHHHHHcCCCCCCCcchhhhhhhhccccccc
Q 001825 663 LAVPLLRHQRIALSWMVQKET------SSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEED 736 (1009)
Q Consensus 663 Lkv~LrPHQkegV~WMlqrE~------s~~~~rGGILADEMGLGKTVqaIALIl~~r~~~~~~~~~~k~~~e~l~~de~~ 736 (1009)
|...|+|||..||.|||..-. ....+.||||||=||||||+|+|+|+....
T Consensus 665 lv~kLKpHQv~GvqFMwd~~~eSlkr~~~~~GsGcILAHcMGLGKTlQVvtflhTvL----------------------- 721 (1567)
T KOG1015|consen 665 LVIKLKPHQVDGVQFMWDCCCESLKRTKKSPGSGCILAHCMGLGKTLQVVTFLHTVL----------------------- 721 (1567)
T ss_pred HHhhcCcccccchhHHHHHHHHHHHhhcCCCCcchHHHHhhcccceehhhHHHHHHH-----------------------
Confidence 446799999999999996432 223568999999999999999999985421
Q ss_pred cccccccccccccccccccccCCCCCCccchhhhhhcCCCCCcEEEEeChhhHHHHHHHHHHHhcC---CCCcEEEEEcC
Q 001825 737 NGIQVNGLDLVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTSVLRQWAEELRNKVTS---KGSLSVLVYHG 813 (1009)
Q Consensus 737 d~~~~~~~~~~k~~~~~C~~~s~~~s~~s~~~~~q~~~rpa~~TLIVcP~SLL~QW~~EI~K~~~~---~~~LkVlVy~G 813 (1009)
.| .....+++|||||.+++.+|.+||.+|.+. ...|.|+-+..
T Consensus 722 ----------------~c------------------~klg~ktaLvV~PlNt~~NW~~EFekWm~~~e~~~~leV~eL~~ 767 (1567)
T KOG1015|consen 722 ----------------LC------------------DKLGFKTALVVCPLNTALNWMNEFEKWMEGLEDDEKLEVSELAT 767 (1567)
T ss_pred ----------------Hh------------------hccCCceEEEEcchHHHHHHHHHHHHhcccccccccceeehhhh
Confidence 01 002235789999999999999999999874 22455655555
Q ss_pred CCCCCCc-ccc----cCCCEEEEehhhhhcccCCCCCCCchhHHHHhhhcCCCCCCcccccccccCCCCCCcccccccCC
Q 001825 814 SSRTKDP-CEL----AKFDVVITTYSIVSMEVPKQPLGDKEDEEEKMKIEGEDLPPMYCSSSKKRKCPPSSDRKGSKQKK 888 (1009)
Q Consensus 814 s~R~k~~-~~L----akyDVVITTYstLs~ev~k~~l~d~dde~ek~~~e~~~~~~~~~ssskkRK~~~~s~kk~s~~kk 888 (1009)
..+.... ..| .+-.|.|+.|+.++....- . ..+.|+
T Consensus 768 vkr~e~R~~~L~~W~~~ggVmIiGYdmyRnLa~g-----------------r--------~vk~rk-------------- 808 (1567)
T KOG1015|consen 768 VKRPEERSYMLQRWQEDGGVMIIGYDMYRNLAQG-----------------R--------NVKSRK-------------- 808 (1567)
T ss_pred ccChHHHHHHHHHHHhcCCEEEEehHHHHHHhcc-----------------c--------chhhhH--------------
Confidence 4443222 112 2457999999998653210 0 000000
Q ss_pred CCCCcchhhccCcccccceeEEEEcccccccchhhHHHHHHHhcccCeEEEEeccCCCCCHHHHHHHHHhhCCCCCCChH
Q 001825 889 GPDGLLLDIVAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAVYK 968 (1009)
Q Consensus 889 ~~d~~~~d~~~s~L~~i~W~RVILDEAH~IKN~~Sq~skAl~~L~Ak~RW~LTGTPIQNsL~DLySLLrFLrp~pf~~~~ 968 (1009)
..+...-.|..-+.++||+||||.|||..+.+++|+..+++++|+||||||+||+|.|.|.+++|++++.+++++
T Consensus 809 -----~ke~f~k~lvdpGPD~vVCDE~HiLKNeksa~Skam~~irtkRRI~LTGTPLQNNLmEY~CMVnFVKe~lLGs~~ 883 (1567)
T KOG1015|consen 809 -----LKEIFNKALVDPGPDFVVCDEGHILKNEKSAVSKAMNSIRTKRRIILTGTPLQNNLMEYHCMVNFVKENLLGSIK 883 (1567)
T ss_pred -----HHHHHHHhccCCCCCeEEecchhhhccchHHHHHHHHHHHhheeEEeecCchhhhhHHHHHHHHhcccccccCcH
Confidence 111122236677889999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhcccccCCchhh--------H----HHHHHHHhhcccccc
Q 001825 969 SFCSMIKVPISKNPVKG--------Y----KKLQAVLKTIMLRRT 1001 (1009)
Q Consensus 969 ~F~~~f~~PIe~~~~~g--------~----~rL~~vLk~~MLRRT 1001 (1009)
+|.++|..||+++.... + .-|..+|+.|+-|+-
T Consensus 884 EfrNRFvNpI~nGq~~dST~~DVr~Mk~RsHILye~LkgcVqRkD 928 (1567)
T KOG1015|consen 884 EFRNRFVNPIQNGQCADSTMVDVRVMKKRSHILYEMLKGCVQRKD 928 (1567)
T ss_pred HHHHhhcCccccCccCCCcHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 99999999999875321 1 236778888877763
No 18
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=99.95 E-value=3.5e-28 Score=300.01 Aligned_cols=188 Identities=20% Similarity=0.272 Sum_probs=146.8
Q ss_pred ccCCCchhHHHHHHHHHhccccCCCCcccEEEcCCCchHHHHHHHHHHHcCCCCCCCcchhhhhhhhccccccccccccc
Q 001825 663 LAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGIQVN 742 (1009)
Q Consensus 663 Lkv~LrPHQkegV~WMlqrE~s~~~~rGGILADEMGLGKTVqaIALIl~~r~~~~~~~~~~k~~~e~l~~de~~d~~~~~ 742 (1009)
.++.|+|||+..+.+++++.. ...|||||||||||++|++++....
T Consensus 149 ~~~~l~pHQl~~~~~vl~~~~-----~R~LLADEvGLGKTIeAglil~~l~----------------------------- 194 (956)
T PRK04914 149 ARASLIPHQLYIAHEVGRRHA-----PRVLLADEVGLGKTIEAGMIIHQQL----------------------------- 194 (956)
T ss_pred CCCCCCHHHHHHHHHHhhccC-----CCEEEEeCCcCcHHHHHHHHHHHHH-----------------------------
Confidence 467799999999988877642 4579999999999999987774321
Q ss_pred cccccccccccccccCCCCCCccchhhhhhcCCCCCcEEEEeChhhHHHHHHHHHHHhcCCCCcEEEEEcCCCCC----C
Q 001825 743 GLDLVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRT----K 818 (1009)
Q Consensus 743 ~~~~~k~~~~~C~~~s~~~s~~s~~~~~q~~~rpa~~TLIVcP~SLL~QW~~EI~K~~~~~~~LkVlVy~Gs~R~----k 818 (1009)
.....+++|||||++|+.||..|+.+++. +.+.++.+..-. .
T Consensus 195 ------------------------------~~g~~~rvLIVvP~sL~~QW~~El~~kF~----l~~~i~~~~~~~~~~~~ 240 (956)
T PRK04914 195 ------------------------------LTGRAERVLILVPETLQHQWLVEMLRRFN----LRFSLFDEERYAEAQHD 240 (956)
T ss_pred ------------------------------HcCCCCcEEEEcCHHHHHHHHHHHHHHhC----CCeEEEcCcchhhhccc
Confidence 11234689999999999999999988876 666777655311 1
Q ss_pred CcccccCCCEEEEehhhhhcccCCCCCCCchhHHHHhhhcCCCCCCcccccccccCCCCCCcccccccCCCCCCcchhhc
Q 001825 819 DPCELAKFDVVITTYSIVSMEVPKQPLGDKEDEEEKMKIEGEDLPPMYCSSSKKRKCPPSSDRKGSKQKKGPDGLLLDIV 898 (1009)
Q Consensus 819 ~~~~LakyDVVITTYstLs~ev~k~~l~d~dde~ek~~~e~~~~~~~~~ssskkRK~~~~s~kk~s~~kk~~d~~~~d~~ 898 (1009)
....+..+++||+||+.+..... .
T Consensus 241 ~~~pf~~~~~vI~S~~~l~~~~~---------~----------------------------------------------- 264 (956)
T PRK04914 241 ADNPFETEQLVICSLDFLRRNKQ---------R----------------------------------------------- 264 (956)
T ss_pred ccCccccCcEEEEEHHHhhhCHH---------H-----------------------------------------------
Confidence 11334578999999999864200 0
Q ss_pred cCcccccceeEEEEcccccccch---hhHHHHHHHhc--ccCeEEEEeccCCCCCHHHHHHHHHhhCCCCCCChHHHHhh
Q 001825 899 AGPLAKVGWFRVVLDEAQSIKNH---RTQVARACWGL--RAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAVYKSFCSM 973 (1009)
Q Consensus 899 ~s~L~~i~W~RVILDEAH~IKN~---~Sq~skAl~~L--~Ak~RW~LTGTPIQNsL~DLySLLrFLrp~pf~~~~~F~~~ 973 (1009)
...+....|++|||||||++|+. .++.++++..| +++++++|||||+||++.|+|++|+||+|+.|+++..|.+.
T Consensus 265 ~~~l~~~~wdlvIvDEAH~lk~~~~~~s~~y~~v~~La~~~~~~LLLTATP~q~~~~e~falL~lLdP~~f~~~~~F~~e 344 (956)
T PRK04914 265 LEQALAAEWDLLVVDEAHHLVWSEEAPSREYQVVEQLAEVIPGVLLLTATPEQLGQESHFARLRLLDPDRFHDYEAFVEE 344 (956)
T ss_pred HHHHhhcCCCEEEEechhhhccCCCCcCHHHHHHHHHhhccCCEEEEEcCcccCCcHHHHHhhhhhCCCcCCCHHHHHHH
Confidence 01145568999999999999953 56778888888 67899999999999999999999999999999999999764
Q ss_pred h
Q 001825 974 I 974 (1009)
Q Consensus 974 f 974 (1009)
.
T Consensus 345 ~ 345 (956)
T PRK04914 345 Q 345 (956)
T ss_pred H
Confidence 3
No 19
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]
Probab=99.95 E-value=1.9e-27 Score=267.19 Aligned_cols=214 Identities=29% Similarity=0.380 Sum_probs=167.9
Q ss_pred ccCCCchhHHHHHHHHHhccccCCCCcccEEEcCCCchHHHHHHHHHHHcCCCCCCCcchhhhhhhhccccccccccccc
Q 001825 663 LAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGIQVN 742 (1009)
Q Consensus 663 Lkv~LrPHQkegV~WMlqrE~s~~~~rGGILADEMGLGKTVqaIALIl~~r~~~~~~~~~~k~~~e~l~~de~~d~~~~~ 742 (1009)
|--.|+|+|++||.+.++|. +..|||||||||||+||||.....|
T Consensus 195 Lvs~LlPFQreGv~faL~Rg------GR~llADeMGLGKTiQAlaIA~yyr----------------------------- 239 (689)
T KOG1000|consen 195 LVSRLLPFQREGVIFALERG------GRILLADEMGLGKTIQALAIARYYR----------------------------- 239 (689)
T ss_pred HHHhhCchhhhhHHHHHhcC------CeEEEecccccchHHHHHHHHHHHh-----------------------------
Confidence 44569999999999999762 3379999999999999999885533
Q ss_pred cccccccccccccccCCCCCCccchhhhhhcCCCCCcEEEEeChhhHHHHHHHHHHHhcCCCCcEEEEEcCCCCCCCccc
Q 001825 743 GLDLVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCE 822 (1009)
Q Consensus 743 ~~~~~k~~~~~C~~~s~~~s~~s~~~~~q~~~rpa~~TLIVcP~SLL~QW~~EI~K~~~~~~~LkVlVy~Gs~R~k~~~~ 822 (1009)
..+|.|||||++|...|++++.+|++.... +.+..+.... .+..
T Consensus 240 ---------------------------------aEwplliVcPAsvrftWa~al~r~lps~~p--i~vv~~~~D~-~~~~ 283 (689)
T KOG1000|consen 240 ---------------------------------AEWPLLIVCPASVRFTWAKALNRFLPSIHP--IFVVDKSSDP-LPDV 283 (689)
T ss_pred ---------------------------------hcCcEEEEecHHHhHHHHHHHHHhcccccc--eEEEecccCC-cccc
Confidence 125799999999999999999999985443 3333332211 1222
Q ss_pred ccCCCEEEEehhhhhcccCCCCCCCchhHHHHhhhcCCCCCCcccccccccCCCCCCcccccccCCCCCCcchhhccCcc
Q 001825 823 LAKFDVVITTYSIVSMEVPKQPLGDKEDEEEKMKIEGEDLPPMYCSSSKKRKCPPSSDRKGSKQKKGPDGLLLDIVAGPL 902 (1009)
Q Consensus 823 LakyDVVITTYstLs~ev~k~~l~d~dde~ek~~~e~~~~~~~~~ssskkRK~~~~s~kk~s~~kk~~d~~~~d~~~s~L 902 (1009)
...-.|+|++|+.+.... ..|
T Consensus 284 ~t~~~v~ivSye~ls~l~-----------------------------------------------------------~~l 304 (689)
T KOG1000|consen 284 CTSNTVAIVSYEQLSLLH-----------------------------------------------------------DIL 304 (689)
T ss_pred ccCCeEEEEEHHHHHHHH-----------------------------------------------------------HHH
Confidence 234569999999985321 124
Q ss_pred cccceeEEEEcccccccchhhHHHHHHHhc--ccCeEEEEeccCCCCCHHHHHHHHHhhCCCCCCChHHHHhhhcccccC
Q 001825 903 AKVGWFRVVLDEAQSIKNHRTQVARACWGL--RAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAVYKSFCSMIKVPISK 980 (1009)
Q Consensus 903 ~~i~W~RVILDEAH~IKN~~Sq~skAl~~L--~Ak~RW~LTGTPIQNsL~DLySLLrFLrp~pf~~~~~F~~~f~~PIe~ 980 (1009)
..-.|..||+||.|++|+.+++..+++.-| .++|.++|||||-..++.|||.+++.+++-.|.++.+|..+|+.--.-
T Consensus 305 ~~~~~~vvI~DEsH~Lk~sktkr~Ka~~dllk~akhvILLSGTPavSRP~elytqi~avd~tlfp~f~efa~rYCd~k~v 384 (689)
T KOG1000|consen 305 KKEKYRVVIFDESHMLKDSKTKRTKAATDLLKVAKHVILLSGTPAVSRPSELYTQIRAVDHTLFPNFHEFAIRYCDGKQV 384 (689)
T ss_pred hcccceEEEEechhhhhccchhhhhhhhhHHHHhhheEEecCCcccCCchhhhhhhhhhcccccccHHHHHHHhcCcccc
Confidence 555699999999999999999999999877 689999999999999999999999999999999999999999863221
Q ss_pred ------CchhhHHHHHHHH-hhcccccccchhh
Q 001825 981 ------NPVKGYKKLQAVL-KTIMLRRTKGEDC 1006 (1009)
Q Consensus 981 ------~~~~g~~rL~~vL-k~~MLRRTK~dv~ 1006 (1009)
..-.+..+|+.+| +.+|+||+|.+|.
T Consensus 385 r~~~Dykg~tnl~EL~~lL~k~lMIRRlK~dvL 417 (689)
T KOG1000|consen 385 RFCFDYKGCTNLEELAALLFKRLMIRRLKADVL 417 (689)
T ss_pred ceeeecCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 1233567888776 5689999999974
No 20
>KOG1016 consensus Predicted DNA helicase, DEAD-box superfamily [General function prediction only]
Probab=99.94 E-value=1.2e-27 Score=276.72 Aligned_cols=260 Identities=25% Similarity=0.334 Sum_probs=188.9
Q ss_pred ccCCCchhHHHHHHHHHhcccc------CCCCcccEEEcCCCchHHHHHHHHHHHcCCCCCCCcchhhhhhhhccccccc
Q 001825 663 LAVPLLRHQRIALSWMVQKETS------SLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEED 736 (1009)
Q Consensus 663 Lkv~LrPHQkegV~WMlqrE~s------~~~~rGGILADEMGLGKTVqaIALIl~~r~~~~~~~~~~k~~~e~l~~de~~ 736 (1009)
|+.-|+|||+-|+.||....-. ...+.|||||+.||||||+|+|+++-..
T Consensus 251 la~v~kPHQiGGiRFlYDN~iESl~rykkSsGFGCILAHSMGLGKTlQVisF~dif------------------------ 306 (1387)
T KOG1016|consen 251 LAHVLKPHQIGGIRFLYDNTIESLGRYKKSSGFGCILAHSMGLGKTLQVISFSDIF------------------------ 306 (1387)
T ss_pred hHhhcCccccCcEEEehhhHHHHHhhccccCCcceeeeeccccCceeEEeehhHHH------------------------
Confidence 4556899999999998744321 1245899999999999999999997321
Q ss_pred cccccccccccccccccccccCCCCCCccchhhhhhcCCCCCcEEEEeChhhHHHHHHHHHHHhcC--------CCCcEE
Q 001825 737 NGIQVNGLDLVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTSVLRQWAEELRNKVTS--------KGSLSV 808 (1009)
Q Consensus 737 d~~~~~~~~~~k~~~~~C~~~s~~~s~~s~~~~~q~~~rpa~~TLIVcP~SLL~QW~~EI~K~~~~--------~~~LkV 808 (1009)
.+.-+++.+|+|+|-.++.+|..|+.+|++. ...+.|
T Consensus 307 -----------------------------------lRhT~AKtVL~ivPiNTlQNWlsEfnmWiP~y~sD~~vrpR~F~v 351 (1387)
T KOG1016|consen 307 -----------------------------------LRHTKAKTVLVIVPINTLQNWLSEFNMWIPKYFSDTGVRPRSFEV 351 (1387)
T ss_pred -----------------------------------hhcCccceEEEEEehHHHHHHHHHhhhhcCCCcccCCCccceeEE
Confidence 1223467899999999999999999999984 234667
Q ss_pred EEEcCCCCCCCc-----ccc-cCCCEEEEehhhhhcccCCCCCCCchhHHHHhhhcCCCCCCcccccccccCCCCCCccc
Q 001825 809 LVYHGSSRTKDP-----CEL-AKFDVVITTYSIVSMEVPKQPLGDKEDEEEKMKIEGEDLPPMYCSSSKKRKCPPSSDRK 882 (1009)
Q Consensus 809 lVy~Gs~R~k~~-----~~L-akyDVVITTYstLs~ev~k~~l~d~dde~ek~~~e~~~~~~~~~ssskkRK~~~~s~kk 882 (1009)
+++....++.+. ..+ ..-.|+|+.|++++-...+ .++ ++.++++..++
T Consensus 352 f~LnD~~KT~~~Rakvi~~Wv~~GGVlLvGYemfRLL~lk------------------~~~--------~~grpkkt~kr 405 (1387)
T KOG1016|consen 352 FLLNDGVKTFDQRAKVIEQWVQTGGVLLVGYEMFRLLILK------------------TLP--------KKGRPKKTLKR 405 (1387)
T ss_pred EEecCchhhHHHHHHHHHHHhccCCEEEehHHHHHHHHHh------------------ccc--------ccCCccccccc
Confidence 777655444321 111 2456999999998532211 000 01111111111
Q ss_pred ccccCCCCCCc-----chhhccCcccccceeEEEEcccccccchhhHHHHHHHhcccCeEEEEeccCCCCCHHHHHHHHH
Q 001825 883 GSKQKKGPDGL-----LLDIVAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFR 957 (1009)
Q Consensus 883 ~s~~kk~~d~~-----~~d~~~s~L~~i~W~RVILDEAH~IKN~~Sq~skAl~~L~Ak~RW~LTGTPIQNsL~DLySLLr 957 (1009)
.+..-.+.++. +...+...|..-..++||+||+|+|||....++.++..++.+||++|||-|+||+|-|.|.++.
T Consensus 406 ~~~~~i~~d~eD~~qe~~~li~~AL~~PGPDlVICDEGHrIKN~~A~iS~aLk~IrtrRRiVLTGYPLQNNLlEYwCMVD 485 (1387)
T KOG1016|consen 406 ISSGFIKDDSEDQRQEAYSLIRSALLEPGPDLVICDEGHRIKNITAEISMALKAIRTRRRIVLTGYPLQNNLLEYWCMVD 485 (1387)
T ss_pred cCCcccCCchhhhHHHHHHHHHHHhcCCCCCeEEecCCceeccchHHHHHHHHHhhhceeEEEeccccccchHHHhhhhe
Confidence 11111111111 2224456688889999999999999999999999999999999999999999999999999999
Q ss_pred hhCCCCCCChHHHHhhhcccccCCch--------hh----HHHHHHHHhhcccccccchhhh
Q 001825 958 FLRYDPFAVYKSFCSMIKVPISKNPV--------KG----YKKLQAVLKTIMLRRTKGEDCL 1007 (1009)
Q Consensus 958 FLrp~pf~~~~~F~~~f~~PIe~~~~--------~g----~~rL~~vLk~~MLRRTK~dv~~ 1007 (1009)
|++|..++++++|+.+|.+||..+.- +- ..-|+.+|+.|+-||+..-+.+
T Consensus 486 FVRP~yLGTR~eF~nmFErPI~NGQCvDStPdDvklmryRtHVLhsLl~GFVQRR~HtvLk~ 547 (1387)
T KOG1016|consen 486 FVRPKYLGTRKEFINMFERPIKNGQCVDSTPDDVKLMRYRTHVLHSLLKGFVQRRTHTVLKK 547 (1387)
T ss_pred eccccccchHHHHHHHhhccccCCccccCChhHHHHHHHHHHHHHHHHHHHHHhcchhhHhh
Confidence 99999999999999999999987642 11 1247889999999999876654
No 21
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=99.90 E-value=4e-25 Score=262.51 Aligned_cols=304 Identities=22% Similarity=0.243 Sum_probs=204.4
Q ss_pred ccchhcccCCCCCccCcchhhccCCCccccccccCCCCCCCCCCCcccCCCCCCcchHHHHHHHHHHhccCCCCCCCCCC
Q 001825 580 QSLVLGKTLSMNRSACSNHSVALGKPVVTSQHSSYSDYPGYPGVPLTGLGGMKSKASDERLILQVAMQGISQPNAEASAP 659 (1009)
Q Consensus 580 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~er~~l~~~l~~i~~p~~e~~~P 659 (1009)
...|+++|.-|.|..|.|++..-.-|........|-.... .+. .+...+.+ .+.+.. .-..+|
T Consensus 224 ~~~~~Vk~k~l~~d~~~~e~~~~~ip~~~~~~qe~~~~~~-----~~~-~~k~~~~~---------~~~~~v--~~~~qP 286 (696)
T KOG0383|consen 224 ATDYLVKWKELSYDEQEWEVEDPDIPGYSSAGQEAWHHRE-----KPT-VSKDLKSN---------TVDDPV--PYEDQP 286 (696)
T ss_pred ceeeEeeeccCCccccCCCcCCCCcccCcccccccccccC-----ccc-cccccccc---------ccCCCC--CcccCC
Confidence 3679999999999999998776544444443333332200 000 00000000 111111 112344
Q ss_pred CCcc--cCCCchhHHHHHHHHHhccccCCCCcccEEEcCCCchHHHHHHHHHHHcCCCCCCCcchhhhhhhhcccccccc
Q 001825 660 DGVL--AVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDN 737 (1009)
Q Consensus 660 ~glL--kv~LrPHQkegV~WMlqrE~s~~~~rGGILADEMGLGKTVqaIALIl~~r~~~~~~~~~~k~~~e~l~~de~~d 737 (1009)
..+. ...|.+||.+|++|+...+..+ .-+|||||||||||+++|+++.....
T Consensus 287 ~~l~~~~g~L~~~qleGln~L~~~ws~~---~~~ilADEmgLgktVqsi~fl~sl~~----------------------- 340 (696)
T KOG0383|consen 287 QFLTEPGGTLHPYQLEGLNWLRISWSPG---VDAILADEMGLGKTVQSIVFLYSLPK----------------------- 340 (696)
T ss_pred ccccCCCccccccchhhhhhhhcccccC---CCcccchhhcCCceeeEEEEEeeccc-----------------------
Confidence 4332 2679999999999999988755 45899999999999999988744321
Q ss_pred ccccccccccccccccccccCCCCCCccchhhhhhcCCCCCcEEEEeChhhHHHHHHHHHHHhcCCCCcEEEEEcCCCCC
Q 001825 738 GIQVNGLDLVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRT 817 (1009)
Q Consensus 738 ~~~~~~~~~~k~~~~~C~~~s~~~s~~s~~~~~q~~~rpa~~TLIVcP~SLL~QW~~EI~K~~~~~~~LkVlVy~Gs~R~ 817 (1009)
.....+|.||++|.+.+.+|.+|+..|.+ .+.+..|+|....
T Consensus 341 -----------------------------------~~~~~~P~Lv~ap~sT~~nwe~e~~~wap---~~~vv~~~G~~k~ 382 (696)
T KOG0383|consen 341 -----------------------------------EIHSPGPPLVVAPLSTIVNWEREFELWAP---SFYVVPYPGTAKS 382 (696)
T ss_pred -----------------------------------ccCCCCCceeeccCccccCCCCchhccCC---CcccccCCCCccc
Confidence 11223578999999999999999999987 6888889988654
Q ss_pred CCcccccCCC----EEEEehhhhhcccCCCCCCCchhHHHHhhhcCCCCCCcccccccccCCCCCCcccccccCCCCCCc
Q 001825 818 KDPCELAKFD----VVITTYSIVSMEVPKQPLGDKEDEEEKMKIEGEDLPPMYCSSSKKRKCPPSSDRKGSKQKKGPDGL 893 (1009)
Q Consensus 818 k~~~~LakyD----VVITTYstLs~ev~k~~l~d~dde~ek~~~e~~~~~~~~~ssskkRK~~~~s~kk~s~~kk~~d~~ 893 (1009)
+.......+. -+.+.-.+. +.+.... .+. ......-.
T Consensus 383 r~iirepe~s~ed~~~~~~~~i~-----------------------------------~~~~~s~-~k~---~vl~~s~~ 423 (696)
T KOG0383|consen 383 RAIIREPEFSFEDSSIKSSPKIS-----------------------------------EMKTESS-AKF---HVLLPSYE 423 (696)
T ss_pred hhhhhcccccccccccccCCccc-----------------------------------cccchhh-ccc---ccCCCchh
Confidence 4221110000 000000000 0000000 000 00000001
Q ss_pred chhhccCcccccceeEEEEcccccccchhhHHHHHHHhcccCeEEEEeccCCCCCHHHHHHHHHhhCCCCCCChHHHHhh
Q 001825 894 LLDIVAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAVYKSFCSM 973 (1009)
Q Consensus 894 ~~d~~~s~L~~i~W~RVILDEAH~IKN~~Sq~skAl~~L~Ak~RW~LTGTPIQNsL~DLySLLrFLrp~pf~~~~~F~~~ 973 (1009)
..+.....+..+.|..+|+||+|++||..+...+.+......++++|||||.||++.+|+++|+||.++.|.+..+|.+.
T Consensus 424 ~~~~~~~il~~v~w~~livde~~rlkn~~s~~f~~l~~~~~~~~~lltgtPlqnn~~el~~ll~flt~~~~~~~~~f~e~ 503 (696)
T KOG0383|consen 424 TIEIDQSILFSVQWGLLIVDEAHRLKNKQSKRFRVLTAYPIDSKLLLTGTPLQNNLEELFNLLNFLTPGRFNSLEWFLEE 503 (696)
T ss_pred hcccCHHHHhhhhcceeEeechhhcccchhhhhhhccccccchhhhccCCcchhhhHHhhhcccccCcccccchhhhhhh
Confidence 11223456889999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred hcccccCCchhhHHHHHHHHhhcccccccchhh
Q 001825 974 IKVPISKNPVKGYKKLQAVLKTIMLRRTKGEDC 1006 (1009)
Q Consensus 974 f~~PIe~~~~~g~~rL~~vLk~~MLRRTK~dv~ 1006 (1009)
|..- ...+.+++|+.+|.+.||||.|.|+.
T Consensus 504 ~~d~---~~~~~~~~l~~l~~p~~lrr~k~d~l 533 (696)
T KOG0383|consen 504 FHDI---SCEEQIKKLHLLLCPHMLRRLKLDVL 533 (696)
T ss_pred cchh---hHHHHHHhhccccCchhhhhhhhhhc
Confidence 8643 34567899999999999999999974
No 22
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.78 E-value=1.7e-18 Score=208.98 Aligned_cols=176 Identities=19% Similarity=0.288 Sum_probs=123.5
Q ss_pred cCCCchhHHHHHHHHHhccccCCCCcccEEEcCCCchHHHHHHHHHHHcCCCCCCCcchhhhhhhhcccccccccccccc
Q 001825 664 AVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGIQVNG 743 (1009)
Q Consensus 664 kv~LrPHQkegV~WMlqrE~s~~~~rGGILADEMGLGKTVqaIALIl~~r~~~~~~~~~~k~~~e~l~~de~~d~~~~~~ 743 (1009)
...|||||++|+.||+... ..++|||...||+|||+++|+++...
T Consensus 253 ~~~LRpYQ~eAl~~~~~~g----r~r~GIIvLPtGaGKTlvai~aa~~l------------------------------- 297 (732)
T TIGR00603 253 TTQIRPYQEKSLSKMFGNG----RARSGIIVLPCGAGKSLVGVTAACTV------------------------------- 297 (732)
T ss_pred CCCcCHHHHHHHHHHHhcC----CCCCcEEEeCCCCChHHHHHHHHHHh-------------------------------
Confidence 4779999999999997532 22679999999999999999887431
Q ss_pred ccccccccccccccCCCCCCccchhhhhhcCCCCCcEEEEeChh-hHHHHHHHHHHHhcCCCCcEEEEEcCCCCCCCccc
Q 001825 744 LDLVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTS-VLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCE 822 (1009)
Q Consensus 744 ~~~~k~~~~~C~~~s~~~s~~s~~~~~q~~~rpa~~TLIVcP~S-LL~QW~~EI~K~~~~~~~LkVlVy~Gs~R~k~~~~ 822 (1009)
.++||||||.. ++.||.+||.+|+.. ....+..|.|..+...
T Consensus 298 ---------------------------------~k~tLILvps~~Lv~QW~~ef~~~~~l-~~~~I~~~tg~~k~~~--- 340 (732)
T TIGR00603 298 ---------------------------------KKSCLVLCTSAVSVEQWKQQFKMWSTI-DDSQICRFTSDAKERF--- 340 (732)
T ss_pred ---------------------------------CCCEEEEeCcHHHHHHHHHHHHHhcCC-CCceEEEEecCccccc---
Confidence 13699999987 589999999999652 2356777877654322
Q ss_pred ccCCCEEEEehhhhhcccCCCCCCCchhHHHHhhhcCCCCCCcccccccccCCCCCCcccccccCCCCCCcchhhccCcc
Q 001825 823 LAKFDVVITTYSIVSMEVPKQPLGDKEDEEEKMKIEGEDLPPMYCSSSKKRKCPPSSDRKGSKQKKGPDGLLLDIVAGPL 902 (1009)
Q Consensus 823 LakyDVVITTYstLs~ev~k~~l~d~dde~ek~~~e~~~~~~~~~ssskkRK~~~~s~kk~s~~kk~~d~~~~d~~~s~L 902 (1009)
....+|+|+||+++.....+. .. .......|
T Consensus 341 ~~~~~VvVtTYq~l~~~~~r~------~~-------------------------------------------~~~~l~~l 371 (732)
T TIGR00603 341 HGEAGVVVSTYSMVAHTGKRS------YE-------------------------------------------SEKVMEWL 371 (732)
T ss_pred ccCCcEEEEEHHHhhcccccc------hh-------------------------------------------hhHHHHHh
Confidence 235789999999986432110 00 00001124
Q ss_pred cccceeEEEEcccccccchhhHHHHHHHhcccCeEEEEeccCCCCCHHHHHHHHHh-hCCCCC
Q 001825 903 AKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRF-LRYDPF 964 (1009)
Q Consensus 903 ~~i~W~RVILDEAH~IKN~~Sq~skAl~~L~Ak~RW~LTGTPIQNsL~DLySLLrF-Lrp~pf 964 (1009)
....|++||+||+|++.+ ....+.+..+.+++||+|||||+++. +.+..+.| +.|..|
T Consensus 372 ~~~~~gLII~DEvH~lpA--~~fr~il~~l~a~~RLGLTATP~ReD--~~~~~L~~LiGP~vy 430 (732)
T TIGR00603 372 TNREWGLILLDEVHVVPA--AMFRRVLTIVQAHCKLGLTATLVRED--DKITDLNFLIGPKLY 430 (732)
T ss_pred ccccCCEEEEEccccccH--HHHHHHHHhcCcCcEEEEeecCcccC--CchhhhhhhcCCeee
Confidence 556899999999999964 33445677789999999999999865 23333443 344433
No 23
>PRK13766 Hef nuclease; Provisional
Probab=99.51 E-value=1e-13 Score=170.75 Aligned_cols=213 Identities=15% Similarity=0.175 Sum_probs=140.3
Q ss_pred cCCCchhHHHHHHHHHhccccCCCCcccEEEcCCCchHHHHHHHHHHHcCCCCCCCcchhhhhhhhcccccccccccccc
Q 001825 664 AVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGIQVNG 743 (1009)
Q Consensus 664 kv~LrPHQkegV~WMlqrE~s~~~~rGGILADEMGLGKTVqaIALIl~~r~~~~~~~~~~k~~~e~l~~de~~d~~~~~~ 743 (1009)
.+++|+||++.+...+. +++|++.++|+|||++++.++....
T Consensus 13 ~~~~r~yQ~~~~~~~l~--------~n~lv~~ptG~GKT~~a~~~i~~~l------------------------------ 54 (773)
T PRK13766 13 TIEARLYQQLLAATALK--------KNTLVVLPTGLGKTAIALLVIAERL------------------------------ 54 (773)
T ss_pred cCCccHHHHHHHHHHhc--------CCeEEEcCCCccHHHHHHHHHHHHH------------------------------
Confidence 35689999999988774 3689999999999998887774310
Q ss_pred ccccccccccccccCCCCCCccchhhhhhcCCCCCcEEEEeCh-hhHHHHHHHHHHHhcCCCCcEEEEEcCCCCCCC-cc
Q 001825 744 LDLVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPT-SVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKD-PC 821 (1009)
Q Consensus 744 ~~~~k~~~~~C~~~s~~~s~~s~~~~~q~~~rpa~~TLIVcP~-SLL~QW~~EI~K~~~~~~~LkVlVy~Gs~R~k~-~~ 821 (1009)
..+.+++|||||. .|+.||.+++++++.. ...++.+++|...... ..
T Consensus 55 ------------------------------~~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~-~~~~v~~~~g~~~~~~r~~ 103 (773)
T PRK13766 55 ------------------------------HKKGGKVLILAPTKPLVEQHAEFFRKFLNI-PEEKIVVFTGEVSPEKRAE 103 (773)
T ss_pred ------------------------------HhCCCeEEEEeCcHHHHHHHHHHHHHHhCC-CCceEEEEeCCCCHHHHHH
Confidence 0123578999998 6889999999988652 2357888888654332 22
Q ss_pred cccCCCEEEEehhhhhcccCCCCCCCchhHHHHhhhcCCCCCCcccccccccCCCCCCcccccccCCCCCCcchhhccCc
Q 001825 822 ELAKFDVVITTYSIVSMEVPKQPLGDKEDEEEKMKIEGEDLPPMYCSSSKKRKCPPSSDRKGSKQKKGPDGLLLDIVAGP 901 (1009)
Q Consensus 822 ~LakyDVVITTYstLs~ev~k~~l~d~dde~ek~~~e~~~~~~~~~ssskkRK~~~~s~kk~s~~kk~~d~~~~d~~~s~ 901 (1009)
.+.+++|+++|+.++...... ..
T Consensus 104 ~~~~~~iiv~T~~~l~~~l~~---------------------------------------------------------~~ 126 (773)
T PRK13766 104 LWEKAKVIVATPQVIENDLIA---------------------------------------------------------GR 126 (773)
T ss_pred HHhCCCEEEECHHHHHHHHHc---------------------------------------------------------CC
Confidence 355789999999988543210 01
Q ss_pred ccccceeEEEEcccccccchhhHHHHHHH---hcccCeEEEEeccCCCCCHHHHHHHHHhhCCCCCCChHHHHhh----h
Q 001825 902 LAKVGWFRVVLDEAQSIKNHRTQVARACW---GLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAVYKSFCSM----I 974 (1009)
Q Consensus 902 L~~i~W~RVILDEAH~IKN~~Sq~skAl~---~L~Ak~RW~LTGTPIQNsL~DLySLLrFLrp~pf~~~~~F~~~----f 974 (1009)
+..-.|+.||+||||++.+..+....+-. ..+..++++|||||.++ ...+..+++-|.......+..|... +
T Consensus 127 ~~~~~~~liVvDEaH~~~~~~~~~~i~~~~~~~~~~~~il~lTaTP~~~-~~~i~~~~~~L~i~~v~~~~~~~~~v~~~~ 205 (773)
T PRK13766 127 ISLEDVSLLIFDEAHRAVGNYAYVYIAERYHEDAKNPLVLGLTASPGSD-EEKIKEVCENLGIEHVEVRTEDDPDVKPYV 205 (773)
T ss_pred CChhhCcEEEEECCccccccccHHHHHHHHHhcCCCCEEEEEEcCCCCC-HHHHHHHHHhCCceEEEEcCCCChhHHhhh
Confidence 22346889999999999865444332222 22455699999999876 5677777777765444322222221 1
Q ss_pred cc----cccCCchhhHHHHHHHHhhcccccccc
Q 001825 975 KV----PISKNPVKGYKKLQAVLKTIMLRRTKG 1003 (1009)
Q Consensus 975 ~~----PIe~~~~~g~~rL~~vLk~~MLRRTK~ 1003 (1009)
.. .+.-.-...+..++..|..+|.+|.+.
T Consensus 206 ~~~~v~~~~v~l~~~~~~i~~~l~~~~~~~l~~ 238 (773)
T PRK13766 206 HKVKIEWVRVELPEELKEIRDLLNEALKDRLKK 238 (773)
T ss_pred ccceeEEEEeCCcHHHHHHHHHHHHHHHHHHHH
Confidence 11 111122345677788888877766553
No 24
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=99.49 E-value=9.2e-14 Score=138.61 Aligned_cols=167 Identities=24% Similarity=0.313 Sum_probs=104.5
Q ss_pred CCCchhHHHHHHHHHhccccCCCCcccEEEcCCCchHHHHHHHHHHHcCCCCCCCcchhhhhhhhccccccccccccccc
Q 001825 665 VPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGIQVNGL 744 (1009)
Q Consensus 665 v~LrPHQkegV~WMlqrE~s~~~~rGGILADEMGLGKTVqaIALIl~~r~~~~~~~~~~k~~~e~l~~de~~d~~~~~~~ 744 (1009)
.+|+|||.+++.-++.........+.++|...+|.|||+++++++....
T Consensus 2 ~~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~------------------------------- 50 (184)
T PF04851_consen 2 YKLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILELA------------------------------- 50 (184)
T ss_dssp -EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHH-------------------------------
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhccc-------------------------------
Confidence 5799999999998887544321126689999999999999998885521
Q ss_pred cccccccccccccCCCCCCccchhhhhhcCCCCCcEEEEeCh-hhHHHHHHHHHHHhcCCCCcEEEEEc--CCC------
Q 001825 745 DLVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPT-SVLRQWAEELRNKVTSKGSLSVLVYH--GSS------ 815 (1009)
Q Consensus 745 ~~~k~~~~~C~~~s~~~s~~s~~~~~q~~~rpa~~TLIVcP~-SLL~QW~~EI~K~~~~~~~LkVlVy~--Gs~------ 815 (1009)
.++|||||. +|+.||.++|..+... ...+.... ...
T Consensus 51 ---------------------------------~~~l~~~p~~~l~~Q~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 95 (184)
T PF04851_consen 51 ---------------------------------RKVLIVAPNISLLEQWYDEFDDFGSE--KYNFFEKSIKPAYDSKEFI 95 (184)
T ss_dssp ---------------------------------CEEEEEESSHHHHHHHHHHHHHHSTT--SEEEEE--GGGCCE-SEEE
T ss_pred ---------------------------------cceeEecCHHHHHHHHHHHHHHhhhh--hhhhccccccccccccccc
Confidence 068999998 6889999999776542 11221110 000
Q ss_pred ----CC--CCcccccCCCEEEEehhhhhcccCCCCCCCchhHHHHhhhcCCCCCCcccccccccCCCCCCcccccccCCC
Q 001825 816 ----RT--KDPCELAKFDVVITTYSIVSMEVPKQPLGDKEDEEEKMKIEGEDLPPMYCSSSKKRKCPPSSDRKGSKQKKG 889 (1009)
Q Consensus 816 ----R~--k~~~~LakyDVVITTYstLs~ev~k~~l~d~dde~ek~~~e~~~~~~~~~ssskkRK~~~~s~kk~s~~kk~ 889 (1009)
.. .........+++++++..+...... ..... . . ..
T Consensus 96 ~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~-----------~~~~~-~-~------------------------~~- 137 (184)
T PF04851_consen 96 SIQDDISDKSESDNNDKDIILTTYQSLQSDIKE-----------EKKID-E-S------------------------AR- 137 (184)
T ss_dssp TTTTEEEHHHHHCBSS-SEEEEEHHHHHHHHHH-----------------------------------------------
T ss_pred ccccccccccccccccccchhhHHHHHHhhccc-----------ccccc-c-c------------------------hh-
Confidence 00 0112245788999999998643210 00000 0 0 00
Q ss_pred CCCcchhhccCcccccceeEEEEcccccccchhhHHHHHHHhcccCeEEEEeccCC
Q 001825 890 PDGLLLDIVAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPI 945 (1009)
Q Consensus 890 ~d~~~~d~~~s~L~~i~W~RVILDEAH~IKN~~Sq~skAl~~L~Ak~RW~LTGTPI 945 (1009)
....+..-.++.||+||||++.+... ++.+....+.+++.|||||.
T Consensus 138 --------~~~~~~~~~~~~vI~DEaH~~~~~~~--~~~i~~~~~~~~l~lTATp~ 183 (184)
T PF04851_consen 138 --------RSYKLLKNKFDLVIIDEAHHYPSDSS--YREIIEFKAAFILGLTATPF 183 (184)
T ss_dssp --------GCHHGGGGSESEEEEETGGCTHHHHH--HHHHHHSSCCEEEEEESS-S
T ss_pred --------hhhhhccccCCEEEEehhhhcCCHHH--HHHHHcCCCCeEEEEEeCcc
Confidence 00113445678999999999866443 66666688999999999996
No 25
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.46 E-value=5.2e-13 Score=132.43 Aligned_cols=168 Identities=26% Similarity=0.247 Sum_probs=112.2
Q ss_pred CCCchhHHHHHHHHHhccccCCCCcccEEEcCCCchHHHHHHHHHHHcCCCCCCCcchhhhhhhhccccccccccccccc
Q 001825 665 VPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGIQVNGL 744 (1009)
Q Consensus 665 v~LrPHQkegV~WMlqrE~s~~~~rGGILADEMGLGKTVqaIALIl~~r~~~~~~~~~~k~~~e~l~~de~~d~~~~~~~ 744 (1009)
.++++||.+++.+++... +..++...+|.|||.+++.++.....
T Consensus 7 ~~~~~~Q~~~~~~~~~~~------~~~~i~~~~GsGKT~~~~~~~~~~~~------------------------------ 50 (201)
T smart00487 7 EPLRPYQKEAIEALLSGL------RDVILAAPTGSGKTLAALLPALEALK------------------------------ 50 (201)
T ss_pred CCCCHHHHHHHHHHHcCC------CcEEEECCCCCchhHHHHHHHHHHhc------------------------------
Confidence 468999999999998532 46899999999999988777754320
Q ss_pred cccccccccccccCCCCCCccchhhhhhcCCCCCcEEEEeC-hhhHHHHHHHHHHHhcCCCCcEEEEEcCCCCCCCcccc
Q 001825 745 DLVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCP-TSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCEL 823 (1009)
Q Consensus 745 ~~~k~~~~~C~~~s~~~s~~s~~~~~q~~~rpa~~TLIVcP-~SLL~QW~~EI~K~~~~~~~LkVlVy~Gs~R~k~~~~L 823 (1009)
..+.+++|||+| ..++.||..++.+.+.........++++.........+
T Consensus 51 -----------------------------~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (201)
T smart00487 51 -----------------------------RGKGKRVLVLVPTRELAEQWAEELKKLGPSLGLKVVGLYGGDSKREQLRKL 101 (201)
T ss_pred -----------------------------ccCCCcEEEEeCCHHHHHHHHHHHHHHhccCCeEEEEEeCCcchHHHHHHH
Confidence 001246999999 56889999999988763222555666665432222222
Q ss_pred c--CCCEEEEehhhhhcccCCCCCCCchhHHHHhhhcCCCCCCcccccccccCCCCCCcccccccCCCCCCcchhhccCc
Q 001825 824 A--KFDVVITTYSIVSMEVPKQPLGDKEDEEEKMKIEGEDLPPMYCSSSKKRKCPPSSDRKGSKQKKGPDGLLLDIVAGP 901 (1009)
Q Consensus 824 a--kyDVVITTYstLs~ev~k~~l~d~dde~ek~~~e~~~~~~~~~ssskkRK~~~~s~kk~s~~kk~~d~~~~d~~~s~ 901 (1009)
. .++++++|++.+...... ..
T Consensus 102 ~~~~~~v~~~t~~~l~~~~~~---------------------------------------------------------~~ 124 (201)
T smart00487 102 ESGKTDILVTTPGRLLDLLEN---------------------------------------------------------DL 124 (201)
T ss_pred hcCCCCEEEeChHHHHHHHHc---------------------------------------------------------CC
Confidence 2 339999999988643211 00
Q ss_pred ccccceeEEEEcccccccc-hhhHHHH-HHHhc-ccCeEEEEeccCCCCCHHHHHH
Q 001825 902 LAKVGWFRVVLDEAQSIKN-HRTQVAR-ACWGL-RAKRRWCLSGTPIQNAIDDLYS 954 (1009)
Q Consensus 902 L~~i~W~RVILDEAH~IKN-~~Sq~sk-Al~~L-~Ak~RW~LTGTPIQNsL~DLyS 954 (1009)
+....|.+||+||+|.+.+ ....... .+..+ ...+++++||||..+.-...+.
T Consensus 125 ~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~v~~saT~~~~~~~~~~~ 180 (201)
T smart00487 125 LELSNVDLVILDEAHRLLDGGFGDQLEKLLKLLPKNVQLLLLSATPPEEIENLLEL 180 (201)
T ss_pred cCHhHCCEEEEECHHHHhcCCcHHHHHHHHHhCCccceEEEEecCCchhHHHHHHH
Confidence 2344688999999999985 3333333 33444 5788999999998544433333
No 26
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=99.38 E-value=3e-12 Score=149.09 Aligned_cols=165 Identities=22% Similarity=0.291 Sum_probs=113.6
Q ss_pred ccCCCchhHHHHHHHHHhccccCCCCcccEEEcCCCchHHHHHHHHHHHcCCCCCCCcchhhhhhhhccccccccccccc
Q 001825 663 LAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGIQVN 742 (1009)
Q Consensus 663 Lkv~LrPHQkegV~WMlqrE~s~~~~rGGILADEMGLGKTVqaIALIl~~r~~~~~~~~~~k~~~e~l~~de~~d~~~~~ 742 (1009)
....|+|||.+++.-++..... . +.||+.=..|.|||+.++.+|...+
T Consensus 33 ~~~~lr~yQ~~al~a~~~~~~~-~--~~gvivlpTGaGKT~va~~~~~~~~----------------------------- 80 (442)
T COG1061 33 FEFELRPYQEEALDALVKNRRT-E--RRGVIVLPTGAGKTVVAAEAIAELK----------------------------- 80 (442)
T ss_pred cCCCCcHHHHHHHHHHHhhccc-C--CceEEEeCCCCCHHHHHHHHHHHhc-----------------------------
Confidence 4567999999999977764333 1 6789999999999999998885432
Q ss_pred cccccccccccccccCCCCCCccchhhhhhcCCCCCcEEEEeChh-hHHHHHHHHHHHhcCCCCcEEEEEcCCCCCCCcc
Q 001825 743 GLDLVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTS-VLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPC 821 (1009)
Q Consensus 743 ~~~~~k~~~~~C~~~s~~~s~~s~~~~~q~~~rpa~~TLIVcP~S-LL~QW~~EI~K~~~~~~~LkVlVy~Gs~R~k~~~ 821 (1009)
..||||||.. |+.||++.+.+++... -.+-.+.|.......
T Consensus 81 -----------------------------------~~~Lvlv~~~~L~~Qw~~~~~~~~~~~--~~~g~~~~~~~~~~~- 122 (442)
T COG1061 81 -----------------------------------RSTLVLVPTKELLDQWAEALKKFLLLN--DEIGIYGGGEKELEP- 122 (442)
T ss_pred -----------------------------------CCEEEEECcHHHHHHHHHHHHHhcCCc--cccceecCceeccCC-
Confidence 1389999986 7899999898887621 234555554433221
Q ss_pred cccCCCEEEEehhhhhcccCCCCCCCchhHHHHhhhcCCCCCCcccccccccCCCCCCcccccccCCCCCCcchhhccCc
Q 001825 822 ELAKFDVVITTYSIVSMEVPKQPLGDKEDEEEKMKIEGEDLPPMYCSSSKKRKCPPSSDRKGSKQKKGPDGLLLDIVAGP 901 (1009)
Q Consensus 822 ~LakyDVVITTYstLs~ev~k~~l~d~dde~ek~~~e~~~~~~~~~ssskkRK~~~~s~kk~s~~kk~~d~~~~d~~~s~ 901 (1009)
.+|+++||+++.+... ...
T Consensus 123 ----~~i~vat~qtl~~~~~---------------------------------------------------------l~~ 141 (442)
T COG1061 123 ----AKVTVATVQTLARRQL---------------------------------------------------------LDE 141 (442)
T ss_pred ----CcEEEEEhHHHhhhhh---------------------------------------------------------hhh
Confidence 6799999999965310 001
Q ss_pred ccccceeEEEEcccccccchhhHHHHHHHhcccCe-EEEEeccCCCCCHHHHHHHHHhhC
Q 001825 902 LAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKR-RWCLSGTPIQNAIDDLYSYFRFLR 960 (1009)
Q Consensus 902 L~~i~W~RVILDEAH~IKN~~Sq~skAl~~L~Ak~-RW~LTGTPIQNsL~DLySLLrFLr 960 (1009)
+..-.|+.||+||+|++.....+. .+..+.+.+ |++|||||....-..+.-++.++.
T Consensus 142 ~~~~~~~liI~DE~Hh~~a~~~~~--~~~~~~~~~~~LGLTATp~R~D~~~~~~l~~~~g 199 (442)
T COG1061 142 FLGNEFGLIIFDEVHHLPAPSYRR--ILELLSAAYPRLGLTATPEREDGGRIGDLFDLIG 199 (442)
T ss_pred hcccccCEEEEEccccCCcHHHHH--HHHhhhcccceeeeccCceeecCCchhHHHHhcC
Confidence 223379999999999997654332 334445556 999999999655334444444444
No 27
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.37 E-value=4.8e-12 Score=118.26 Aligned_cols=137 Identities=26% Similarity=0.233 Sum_probs=95.4
Q ss_pred ccEEEcCCCchHHHHHHHHHHHcCCCCCCCcchhhhhhhhccccccccccccccccccccccccccccCCCCCCccchhh
Q 001825 690 GGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGIQVNGLDLVKQESDYCRVVPNGSSAKSFNFV 769 (1009)
Q Consensus 690 GGILADEMGLGKTVqaIALIl~~r~~~~~~~~~~k~~~e~l~~de~~d~~~~~~~~~~k~~~~~C~~~s~~~s~~s~~~~ 769 (1009)
+.++...+|.|||.++++++.....
T Consensus 2 ~~~i~~~~G~GKT~~~~~~~~~~~~------------------------------------------------------- 26 (144)
T cd00046 2 DVLLAAPTGSGKTLAALLPILELLD------------------------------------------------------- 26 (144)
T ss_pred CEEEECCCCCchhHHHHHHHHHHHh-------------------------------------------------------
Confidence 5799999999999999999865320
Q ss_pred hhhcCCCCCcEEEEeChhhH-HHHHHHHHHHhcCCCCcEEEEEcCCCCCCCc--ccccCCCEEEEehhhhhcccCCCCCC
Q 001825 770 EQAKGRPAAGTLVVCPTSVL-RQWAEELRNKVTSKGSLSVLVYHGSSRTKDP--CELAKFDVVITTYSIVSMEVPKQPLG 846 (1009)
Q Consensus 770 ~q~~~rpa~~TLIVcP~SLL-~QW~~EI~K~~~~~~~LkVlVy~Gs~R~k~~--~~LakyDVVITTYstLs~ev~k~~l~ 846 (1009)
....+++|||||...+ .||.+++.++... .+.+.++++....... ......+++++||+.+......
T Consensus 27 ----~~~~~~~lv~~p~~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~i~t~~~~~~~~~~---- 96 (144)
T cd00046 27 ----SLKGGQVLVLAPTRELANQVAERLKELFGE--GIKVGYLIGGTSIKQQEKLLSGKTDIVVGTPGRLLDELER---- 96 (144)
T ss_pred ----cccCCCEEEEcCcHHHHHHHHHHHHHHhhC--CcEEEEEecCcchhHHHHHhcCCCCEEEECcHHHHHHHHc----
Confidence 0123579999999855 6667777776542 4667777766543321 2246789999999988543210
Q ss_pred CchhHHHHhhhcCCCCCCcccccccccCCCCCCcccccccCCCCCCcchhhccCcccccceeEEEEcccccccchhhHHH
Q 001825 847 DKEDEEEKMKIEGEDLPPMYCSSSKKRKCPPSSDRKGSKQKKGPDGLLLDIVAGPLAKVGWFRVVLDEAQSIKNHRTQVA 926 (1009)
Q Consensus 847 d~dde~ek~~~e~~~~~~~~~ssskkRK~~~~s~kk~s~~kk~~d~~~~d~~~s~L~~i~W~RVILDEAH~IKN~~Sq~s 926 (1009)
..+....|++||+||+|.+++......
T Consensus 97 -----------------------------------------------------~~~~~~~~~~iiiDE~h~~~~~~~~~~ 123 (144)
T cd00046 97 -----------------------------------------------------LKLSLKKLDLLILDEAHRLLNQGFGLL 123 (144)
T ss_pred -----------------------------------------------------CCcchhcCCEEEEeCHHHHhhcchHHH
Confidence 002344688999999999988765543
Q ss_pred ---HHHHhcccCeEEEEeccC
Q 001825 927 ---RACWGLRAKRRWCLSGTP 944 (1009)
Q Consensus 927 ---kAl~~L~Ak~RW~LTGTP 944 (1009)
.........+++++||||
T Consensus 124 ~~~~~~~~~~~~~~i~~saTp 144 (144)
T cd00046 124 GLKILLKLPKDRQVLLLSATP 144 (144)
T ss_pred HHHHHhhCCccceEEEEeccC
Confidence 344456778999999999
No 28
>PHA02558 uvsW UvsW helicase; Provisional
Probab=99.37 E-value=8.5e-12 Score=147.29 Aligned_cols=149 Identities=15% Similarity=0.148 Sum_probs=101.9
Q ss_pred cCCCchhHHHHHHHHHhccccCCCCcccEEEcCCCchHHHHHHHHHHHcCCCCCCCcchhhhhhhhcccccccccccccc
Q 001825 664 AVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGIQVNG 743 (1009)
Q Consensus 664 kv~LrPHQkegV~WMlqrE~s~~~~rGGILADEMGLGKTVqaIALIl~~r~~~~~~~~~~k~~~e~l~~de~~d~~~~~~ 743 (1009)
...|+|||.+++.-++.. +.+||.-.+|.|||+++++++....
T Consensus 112 ~~~~r~~Q~~av~~~l~~-------~~~il~apTGsGKT~i~~~l~~~~~------------------------------ 154 (501)
T PHA02558 112 KIEPHWYQYDAVYEGLKN-------NRRLLNLPTSAGKSLIQYLLSRYYL------------------------------ 154 (501)
T ss_pred cCCCCHHHHHHHHHHHhc-------CceEEEeCCCCCHHHHHHHHHHHHH------------------------------
Confidence 467999999999877753 4579999999999998766542210
Q ss_pred ccccccccccccccCCCCCCccchhhhhhcCCCCCcEEEEeCh-hhHHHHHHHHHHHhcCCCCcEEEEEcCCCCCCCccc
Q 001825 744 LDLVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPT-SVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCE 822 (1009)
Q Consensus 744 ~~~~k~~~~~C~~~s~~~s~~s~~~~~q~~~rpa~~TLIVcP~-SLL~QW~~EI~K~~~~~~~LkVlVy~Gs~R~k~~~~ 822 (1009)
. ....++|||||. .|+.||.++|.++..........++.|....
T Consensus 155 -----------------------------~-~~~~~vLilvpt~eL~~Q~~~~l~~~~~~~~~~~~~i~~g~~~~----- 199 (501)
T PHA02558 155 -----------------------------E-NYEGKVLIIVPTTSLVTQMIDDFVDYRLFPREAMHKIYSGTAKD----- 199 (501)
T ss_pred -----------------------------h-cCCCeEEEEECcHHHHHHHHHHHHHhccccccceeEEecCcccC-----
Confidence 0 011269999998 5889999999987642222222445554332
Q ss_pred ccCCCEEEEehhhhhcccCCCCCCCchhHHHHhhhcCCCCCCcccccccccCCCCCCcccccccCCCCCCcchhhccCcc
Q 001825 823 LAKFDVVITTYSIVSMEVPKQPLGDKEDEEEKMKIEGEDLPPMYCSSSKKRKCPPSSDRKGSKQKKGPDGLLLDIVAGPL 902 (1009)
Q Consensus 823 LakyDVVITTYstLs~ev~k~~l~d~dde~ek~~~e~~~~~~~~~ssskkRK~~~~s~kk~s~~kk~~d~~~~d~~~s~L 902 (1009)
...+|+|+|++.+..... ..+
T Consensus 200 -~~~~I~VaT~qsl~~~~~----------------------------------------------------------~~~ 220 (501)
T PHA02558 200 -TDAPIVVSTWQSAVKQPK----------------------------------------------------------EWF 220 (501)
T ss_pred -CCCCEEEeeHHHHhhchh----------------------------------------------------------hhc
Confidence 357899999988742100 001
Q ss_pred cccceeEEEEcccccccchhhHHHHHHHhc-ccCeEEEEeccCCCC
Q 001825 903 AKVGWFRVVLDEAQSIKNHRTQVARACWGL-RAKRRWCLSGTPIQN 947 (1009)
Q Consensus 903 ~~i~W~RVILDEAH~IKN~~Sq~skAl~~L-~Ak~RW~LTGTPIQN 947 (1009)
-.|+.||+||||++... .....+..+ .++++++|||||...
T Consensus 221 --~~~~~iIvDEaH~~~~~--~~~~il~~~~~~~~~lGLTATp~~~ 262 (501)
T PHA02558 221 --DQFGMVIVDECHLFTGK--SLTSIITKLDNCKFKFGLTGSLRDG 262 (501)
T ss_pred --cccCEEEEEchhcccch--hHHHHHHhhhccceEEEEeccCCCc
Confidence 14789999999999753 234455566 588999999999653
No 29
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.12 E-value=2.9e-10 Score=144.72 Aligned_cols=111 Identities=18% Similarity=0.128 Sum_probs=72.8
Q ss_pred CCCchhHHHHHHHHHhccccCCCCcccEEEcCCCchHHHHHHHHHHHcCCCCCCCcchhhhhhhhccccccccccccccc
Q 001825 665 VPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGIQVNGL 744 (1009)
Q Consensus 665 v~LrPHQkegV~WMlqrE~s~~~~rGGILADEMGLGKTVqaIALIl~~r~~~~~~~~~~k~~~e~l~~de~~d~~~~~~~ 744 (1009)
..||+||.+|+..+.+....+. ++++|....|.|||+++++++....
T Consensus 412 ~~lR~YQ~~AI~ai~~a~~~g~--r~~Ll~maTGSGKT~tai~li~~L~------------------------------- 458 (1123)
T PRK11448 412 LGLRYYQEDAIQAVEKAIVEGQ--REILLAMATGTGKTRTAIALMYRLL------------------------------- 458 (1123)
T ss_pred CCCCHHHHHHHHHHHHHHHhcc--CCeEEEeCCCCCHHHHHHHHHHHHH-------------------------------
Confidence 5799999999987776543322 6799999999999999998885421
Q ss_pred cccccccccccccCCCCCCccchhhhhhcCCCCCcEEEEeChh-hHHHHHHHHHHHhcCCCCcEEE-EEcCCCCCCCccc
Q 001825 745 DLVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTS-VLRQWAEELRNKVTSKGSLSVL-VYHGSSRTKDPCE 822 (1009)
Q Consensus 745 ~~~k~~~~~C~~~s~~~s~~s~~~~~q~~~rpa~~TLIVcP~S-LL~QW~~EI~K~~~~~~~LkVl-Vy~Gs~R~k~~~~ 822 (1009)
+....+++|+|||.. |+.||.++|..+.... ...+. ++.. ........
T Consensus 459 ----------------------------~~~~~~rVLfLvDR~~L~~Qa~~~F~~~~~~~-~~~~~~i~~i-~~L~~~~~ 508 (1123)
T PRK11448 459 ----------------------------KAKRFRRILFLVDRSALGEQAEDAFKDTKIEG-DQTFASIYDI-KGLEDKFP 508 (1123)
T ss_pred ----------------------------hcCccCeEEEEecHHHHHHHHHHHHHhccccc-ccchhhhhch-hhhhhhcc
Confidence 001234799999975 8899999998763311 11111 1111 10011111
Q ss_pred ccCCCEEEEehhhhhc
Q 001825 823 LAKFDVVITTYSIVSM 838 (1009)
Q Consensus 823 LakyDVVITTYstLs~ 838 (1009)
-....|+|+|+.++.+
T Consensus 509 ~~~~~I~iaTiQtl~~ 524 (1123)
T PRK11448 509 EDETKVHVATVQGMVK 524 (1123)
T ss_pred cCCCCEEEEEHHHHHH
Confidence 2357899999999854
No 30
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]
Probab=99.06 E-value=2.2e-10 Score=130.90 Aligned_cols=170 Identities=24% Similarity=0.347 Sum_probs=119.7
Q ss_pred cCCCchhHHHHHHHHHhccccCCCCcccEEEcCCCchHHHHHHHHHHHcCCCCCCCcchhhhhhhhcccccccccccccc
Q 001825 664 AVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGIQVNG 743 (1009)
Q Consensus 664 kv~LrPHQkegV~WMlqrE~s~~~~rGGILADEMGLGKTVqaIALIl~~r~~~~~~~~~~k~~~e~l~~de~~d~~~~~~ 743 (1009)
.+.|||||...+.-|.-.. .+|.||+.=..|.|||+..+..+...
T Consensus 300 st~iRpYQEksL~KMFGNg----RARSGiIVLPCGAGKtLVGvTAa~ti------------------------------- 344 (776)
T KOG1123|consen 300 STQIRPYQEKSLSKMFGNG----RARSGIIVLPCGAGKTLVGVTAACTI------------------------------- 344 (776)
T ss_pred ccccCchHHHHHHHHhCCC----cccCceEEEecCCCCceeeeeeeeee-------------------------------
Confidence 3568999999999999653 34789999999999999877665321
Q ss_pred ccccccccccccccCCCCCCccchhhhhhcCCCCCcEEEEeChhh-HHHHHHHHHHHhcCCCCcEEEEEcCCCCCCCccc
Q 001825 744 LDLVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTSV-LRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCE 822 (1009)
Q Consensus 744 ~~~~k~~~~~C~~~s~~~s~~s~~~~~q~~~rpa~~TLIVcP~SL-L~QW~~EI~K~~~~~~~LkVlVy~Gs~R~k~~~~ 822 (1009)
.+..||+|-.++ +.||+.++..|.+. ..-.+..++...+.+.+
T Consensus 345 ---------------------------------kK~clvLcts~VSVeQWkqQfk~wsti-~d~~i~rFTsd~Ke~~~-- 388 (776)
T KOG1123|consen 345 ---------------------------------KKSCLVLCTSAVSVEQWKQQFKQWSTI-QDDQICRFTSDAKERFP-- 388 (776)
T ss_pred ---------------------------------cccEEEEecCccCHHHHHHHHHhhccc-CccceEEeeccccccCC--
Confidence 135799999875 89999999999873 33466777766554433
Q ss_pred ccCCCEEEEehhhhhcccCCCCCCCchhHHHHhhhcCCCCCCcccccccccCCCCCCcccccccCCCCCCcchhhccCcc
Q 001825 823 LAKFDVVITTYSIVSMEVPKQPLGDKEDEEEKMKIEGEDLPPMYCSSSKKRKCPPSSDRKGSKQKKGPDGLLLDIVAGPL 902 (1009)
Q Consensus 823 LakyDVVITTYstLs~ev~k~~l~d~dde~ek~~~e~~~~~~~~~ssskkRK~~~~s~kk~s~~kk~~d~~~~d~~~s~L 902 (1009)
..+.|||+||+++..--.+ ..+.+ ..-..|
T Consensus 389 -~~~gvvvsTYsMva~t~kR------S~eae-------------------------------------------k~m~~l 418 (776)
T KOG1123|consen 389 -SGAGVVVTTYSMVAYTGKR------SHEAE-------------------------------------------KIMDFL 418 (776)
T ss_pred -CCCcEEEEeeehhhhcccc------cHHHH-------------------------------------------HHHHHH
Confidence 4678999999998642111 00101 112337
Q ss_pred cccceeEEEEcccccccchhhHHHHHHHhcccCeEEEEeccCCCC--CHHHHHHHHHhhC
Q 001825 903 AKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQN--AIDDLYSYFRFLR 960 (1009)
Q Consensus 903 ~~i~W~RVILDEAH~IKN~~Sq~skAl~~L~Ak~RW~LTGTPIQN--sL~DLySLLrFLr 960 (1009)
....|..+||||.|.+- .....+.+.-+.+..++.||||-+.- ++.| |+||-
T Consensus 419 ~~~EWGllllDEVHvvP--A~MFRRVlsiv~aHcKLGLTATLvREDdKI~D----LNFLI 472 (776)
T KOG1123|consen 419 RGREWGLLLLDEVHVVP--AKMFRRVLSIVQAHCKLGLTATLVREDDKITD----LNFLI 472 (776)
T ss_pred hcCeeeeEEeehhccch--HHHHHHHHHHHHHHhhccceeEEeeccccccc----cceee
Confidence 77899999999999984 23333444445788899999999864 4555 45554
No 31
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=98.94 E-value=2.3e-09 Score=130.94 Aligned_cols=110 Identities=17% Similarity=0.096 Sum_probs=72.8
Q ss_pred ccCCCchhHHHHHHHHHhccccCC---CCcccEEEcCCCchHHHHHHHHHHHcCCCCCCCcchhhhhhhhcccccccccc
Q 001825 663 LAVPLLRHQRIALSWMVQKETSSL---HCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGI 739 (1009)
Q Consensus 663 Lkv~LrPHQkegV~WMlqrE~s~~---~~rGGILADEMGLGKTVqaIALIl~~r~~~~~~~~~~k~~~e~l~~de~~d~~ 739 (1009)
++.-.++||.+||..++.+..... ..++|++.+..|.|||++++.++....
T Consensus 235 ~k~~~r~~Q~~av~~~~~~~~~~~~~~~~~~gli~~~TGsGKT~t~~~la~~l~-------------------------- 288 (667)
T TIGR00348 235 TKPYQRYMQYRAVKKIVESITRKTWGKDERGGLIWHTQGSGKTLTMLFAARKAL-------------------------- 288 (667)
T ss_pred eeeehHHHHHHHHHHHHHHHHhcccCCCCceeEEEEecCCCccHHHHHHHHHHH--------------------------
Confidence 445578999999998887754321 126899999999999999988874421
Q ss_pred ccccccccccccccccccCCCCCCccchhhhhhcCCCCCcEEEEeChh-hHHHHHHHHHHHhcCCCCcEEEEEcCCCCCC
Q 001825 740 QVNGLDLVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTS-VLRQWAEELRNKVTSKGSLSVLVYHGSSRTK 818 (1009)
Q Consensus 740 ~~~~~~~~k~~~~~C~~~s~~~s~~s~~~~~q~~~rpa~~TLIVcP~S-LL~QW~~EI~K~~~~~~~LkVlVy~Gs~R~k 818 (1009)
+.....++|||||.. |..||.++|.++... . + .+.....
T Consensus 289 ---------------------------------~~~~~~~vl~lvdR~~L~~Q~~~~f~~~~~~--~--~---~~~~s~~ 328 (667)
T TIGR00348 289 ---------------------------------ELLKNPKVFFVVDRRELDYQLMKEFQSLQKD--C--A---ERIESIA 328 (667)
T ss_pred ---------------------------------hhcCCCeEEEEECcHHHHHHHHHHHHhhCCC--C--C---cccCCHH
Confidence 001124689999985 889999999987531 0 0 0000000
Q ss_pred C-cccc--cCCCEEEEehhhhhc
Q 001825 819 D-PCEL--AKFDVVITTYSIVSM 838 (1009)
Q Consensus 819 ~-~~~L--akyDVVITTYstLs~ 838 (1009)
. ...+ ....|||+|...+..
T Consensus 329 ~L~~~l~~~~~~iivtTiQk~~~ 351 (667)
T TIGR00348 329 ELKRLLEKDDGGIIITTIQKFDK 351 (667)
T ss_pred HHHHHHhCCCCCEEEEEhHHhhh
Confidence 0 0111 246799999999854
No 32
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=98.93 E-value=8.5e-09 Score=106.29 Aligned_cols=159 Identities=21% Similarity=0.146 Sum_probs=103.3
Q ss_pred CCchhHHHHHHHHHhccccCCCCcccEEEcCCCchHHHHHHHHHHHcCCCCCCCcchhhhhhhhcccccccccccccccc
Q 001825 666 PLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGIQVNGLD 745 (1009)
Q Consensus 666 ~LrPHQkegV~WMlqrE~s~~~~rGGILADEMGLGKTVqaIALIl~~r~~~~~~~~~~k~~~e~l~~de~~d~~~~~~~~ 745 (1009)
.++++|.+++..+.+ ++..+++-..|.|||+..+..++....
T Consensus 21 ~~~~~Q~~~~~~~~~-------~~~~li~~~TG~GKT~~~~~~~l~~~~------------------------------- 62 (203)
T cd00268 21 KPTPIQARAIPPLLS-------GRDVIGQAQTGSGKTAAFLIPILEKLD------------------------------- 62 (203)
T ss_pred CCCHHHHHHHHHHhc-------CCcEEEECCCCCcHHHHHHHHHHHHHH-------------------------------
Confidence 479999999998885 267899999999999885444432110
Q ss_pred ccccccccccccCCCCCCccchhhhhhcCCCCCcEEEEeChh-hHHHHHHHHHHHhcCCCCcEEEEEcCCCCCCC-cccc
Q 001825 746 LVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTS-VLRQWAEELRNKVTSKGSLSVLVYHGSSRTKD-PCEL 823 (1009)
Q Consensus 746 ~~k~~~~~C~~~s~~~s~~s~~~~~q~~~rpa~~TLIVcP~S-LL~QW~~EI~K~~~~~~~LkVlVy~Gs~R~k~-~~~L 823 (1009)
.........+|||||.. ++.||...++++.. ...+++..++|...... ...+
T Consensus 63 -------------------------~~~~~~~~~viii~p~~~L~~q~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 116 (203)
T cd00268 63 -------------------------PSPKKDGPQALILAPTRELALQIAEVARKLGK-HTNLKVVVIYGGTSIDKQIRKL 116 (203)
T ss_pred -------------------------hhcccCCceEEEEcCCHHHHHHHHHHHHHHhc-cCCceEEEEECCCCHHHHHHHh
Confidence 00001123589999975 88999999988764 34678888888654322 1222
Q ss_pred -cCCCEEEEehhhhhcccCCCCCCCchhHHHHhhhcCCCCCCcccccccccCCCCCCcccccccCCCCCCcchhhccCcc
Q 001825 824 -AKFDVVITTYSIVSMEVPKQPLGDKEDEEEKMKIEGEDLPPMYCSSSKKRKCPPSSDRKGSKQKKGPDGLLLDIVAGPL 902 (1009)
Q Consensus 824 -akyDVVITTYstLs~ev~k~~l~d~dde~ek~~~e~~~~~~~~~ssskkRK~~~~s~kk~s~~kk~~d~~~~d~~~s~L 902 (1009)
...+|+|+|.+.+...+.. . .+
T Consensus 117 ~~~~~iiv~T~~~l~~~l~~-----------------~----------------------------------------~~ 139 (203)
T cd00268 117 KRGPHIVVATPGRLLDLLER-----------------G----------------------------------------KL 139 (203)
T ss_pred cCCCCEEEEChHHHHHHHHc-----------------C----------------------------------------CC
Confidence 3789999998877432210 0 01
Q ss_pred cccceeEEEEcccccccchh-hHHHH-HHHhcc-cCeEEEEeccCC
Q 001825 903 AKVGWFRVVLDEAQSIKNHR-TQVAR-ACWGLR-AKRRWCLSGTPI 945 (1009)
Q Consensus 903 ~~i~W~RVILDEAH~IKN~~-Sq~sk-Al~~L~-Ak~RW~LTGTPI 945 (1009)
.--.+.+||+||+|.+.+.. ..... .+..+. ....+++||||-
T Consensus 140 ~~~~l~~lIvDE~h~~~~~~~~~~~~~~~~~l~~~~~~~~~SAT~~ 185 (203)
T cd00268 140 DLSKVKYLVLDEADRMLDMGFEDQIREILKLLPKDRQTLLFSATMP 185 (203)
T ss_pred ChhhCCEEEEeChHHhhccChHHHHHHHHHhCCcccEEEEEeccCC
Confidence 11235789999999876543 22222 333443 467899999998
No 33
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=98.86 E-value=2e-08 Score=122.13 Aligned_cols=112 Identities=22% Similarity=0.292 Sum_probs=79.4
Q ss_pred ccCCCchhHHHHHHHHHhccccCCCCcccEEEcCCCchHHHHHHHHHHHcCCCCCCCcchhhhhhhhccccccccccccc
Q 001825 663 LAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGIQVN 742 (1009)
Q Consensus 663 Lkv~LrPHQkegV~WMlqrE~s~~~~rGGILADEMGLGKTVqaIALIl~~r~~~~~~~~~~k~~~e~l~~de~~d~~~~~ 742 (1009)
+...|.++|++++..++....... +...+|.-++|.|||+.++..++...
T Consensus 232 lpf~lt~~Q~~ai~~I~~~~~~~~-~~~~Ll~g~TGSGKT~va~l~il~~~----------------------------- 281 (630)
T TIGR00643 232 LPFKLTRAQKRVVKEILQDLKSDV-PMNRLLQGDVGSGKTLVAALAMLAAI----------------------------- 281 (630)
T ss_pred CCCCCCHHHHHHHHHHHHHhccCC-CccEEEECCCCCcHHHHHHHHHHHHH-----------------------------
Confidence 456799999999999987543321 23468999999999998765553311
Q ss_pred cccccccccccccccCCCCCCccchhhhhhcCCCCCcEEEEeChh-hHHHHHHHHHHHhcCCCCcEEEEEcCCCCCCCc-
Q 001825 743 GLDLVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTS-VLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDP- 820 (1009)
Q Consensus 743 ~~~~~k~~~~~C~~~s~~~s~~s~~~~~q~~~rpa~~TLIVcP~S-LL~QW~~EI~K~~~~~~~LkVlVy~Gs~R~k~~- 820 (1009)
. ....+||++|.. |..||.+++++++.. -.+++.+++|.......
T Consensus 282 ------------------------------~--~g~qvlilaPT~~LA~Q~~~~~~~l~~~-~gi~v~lltg~~~~~~r~ 328 (630)
T TIGR00643 282 ------------------------------E--AGYQVALMAPTEILAEQHYNSLRNLLAP-LGIEVALLTGSLKGKRRK 328 (630)
T ss_pred ------------------------------H--cCCcEEEECCHHHHHHHHHHHHHHHhcc-cCcEEEEEecCCCHHHHH
Confidence 0 012489999996 669999999998762 34889999987654321
Q ss_pred ---cc--ccCCCEEEEehhhhh
Q 001825 821 ---CE--LAKFDVVITTYSIVS 837 (1009)
Q Consensus 821 ---~~--LakyDVVITTYstLs 837 (1009)
.. -.+.+|||.|+..+.
T Consensus 329 ~~~~~i~~g~~~IiVgT~~ll~ 350 (630)
T TIGR00643 329 ELLETIASGQIHLVVGTHALIQ 350 (630)
T ss_pred HHHHHHhCCCCCEEEecHHHHh
Confidence 11 236799999998763
No 34
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=98.81 E-value=2.9e-08 Score=98.61 Aligned_cols=159 Identities=23% Similarity=0.295 Sum_probs=105.6
Q ss_pred hhHHHHHHHHHhccccCCCCcccEEEcCCCchHHHHHHHHHHHcCCCCCCCcchhhhhhhhccccccccccccccccccc
Q 001825 669 RHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGIQVNGLDLVK 748 (1009)
Q Consensus 669 PHQkegV~WMlqrE~s~~~~rGGILADEMGLGKTVqaIALIl~~r~~~~~~~~~~k~~~e~l~~de~~d~~~~~~~~~~k 748 (1009)
|+|.+++.-+.+. +..|+.-..|.|||..++-.++...
T Consensus 2 ~~Q~~~~~~i~~~-------~~~li~aptGsGKT~~~~~~~l~~~----------------------------------- 39 (169)
T PF00270_consen 2 PLQQEAIEAIISG-------KNVLISAPTGSGKTLAYILPALNRL----------------------------------- 39 (169)
T ss_dssp HHHHHHHHHHHTT-------SEEEEECSTTSSHHHHHHHHHHHHH-----------------------------------
T ss_pred HHHHHHHHHHHcC-------CCEEEECCCCCccHHHHHHHHHhhh-----------------------------------
Confidence 7999999988832 3478999999999999876554311
Q ss_pred cccccccccCCCCCCccchhhhhhcCCCCCcEEEEeChh-hHHHHHHHHHHHhcCCCCcEEEEEcCCCCCC-Cc-ccc-c
Q 001825 749 QESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTS-VLRQWAEELRNKVTSKGSLSVLVYHGSSRTK-DP-CEL-A 824 (1009)
Q Consensus 749 ~~~~~C~~~s~~~s~~s~~~~~q~~~rpa~~TLIVcP~S-LL~QW~~EI~K~~~~~~~LkVlVy~Gs~R~k-~~-~~L-a 824 (1009)
.+. ..+.+||+||.. ++.|=.+++.+++.. ..+++..+++..... .. ..+ .
T Consensus 40 -----------------------~~~-~~~~~lii~P~~~l~~q~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 94 (169)
T PF00270_consen 40 -----------------------QEG-KDARVLIIVPTRALAEQQFERLRKFFSN-TNVRVVLLHGGQSISEDQREVLSN 94 (169)
T ss_dssp -----------------------HTT-SSSEEEEEESSHHHHHHHHHHHHHHTTT-TTSSEEEESTTSCHHHHHHHHHHT
T ss_pred -----------------------ccC-CCceEEEEeecccccccccccccccccc-cccccccccccccccccccccccc
Confidence 000 123689999974 889999999988763 457788877765422 11 122 4
Q ss_pred CCCEEEEehhhhhcccCCCCCCCchhHHHHhhhcCCCCCCcccccccccCCCCCCcccccccCCCCCCcchhhccCcccc
Q 001825 825 KFDVVITTYSIVSMEVPKQPLGDKEDEEEKMKIEGEDLPPMYCSSSKKRKCPPSSDRKGSKQKKGPDGLLLDIVAGPLAK 904 (1009)
Q Consensus 825 kyDVVITTYstLs~ev~k~~l~d~dde~ek~~~e~~~~~~~~~ssskkRK~~~~s~kk~s~~kk~~d~~~~d~~~s~L~~ 904 (1009)
..+|+|+|++.+...+.. ++ ..+.
T Consensus 95 ~~~ilv~T~~~l~~~~~~------------------------------~~-------------------------~~~~- 118 (169)
T PF00270_consen 95 QADILVTTPEQLLDLISN------------------------------GK-------------------------INIS- 118 (169)
T ss_dssp TSSEEEEEHHHHHHHHHT------------------------------TS-------------------------STGT-
T ss_pred cccccccCcchhhccccc------------------------------cc-------------------------cccc-
Confidence 699999999998543210 00 0022
Q ss_pred cceeEEEEcccccccch--hhHHHHHHHhc---ccCeEEEEeccCCCCCHHHH
Q 001825 905 VGWFRVVLDEAQSIKNH--RTQVARACWGL---RAKRRWCLSGTPIQNAIDDL 952 (1009)
Q Consensus 905 i~W~RVILDEAH~IKN~--~Sq~skAl~~L---~Ak~RW~LTGTPIQNsL~DL 952 (1009)
...+||+||+|.+... .......+..+ ...+.+++||||- ..+++|
T Consensus 119 -~~~~iViDE~h~l~~~~~~~~~~~i~~~~~~~~~~~~i~~SAT~~-~~~~~~ 169 (169)
T PF00270_consen 119 -RLSLIVIDEAHHLSDETFRAMLKSILRRLKRFKNIQIILLSATLP-SNVEKL 169 (169)
T ss_dssp -TESEEEEETHHHHHHTTHHHHHHHHHHHSHTTTTSEEEEEESSST-HHHHHH
T ss_pred -cceeeccCcccccccccHHHHHHHHHHHhcCCCCCcEEEEeeCCC-hhHhhC
Confidence 2578999999998663 22233333333 3467899999998 666554
No 35
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=98.74 E-value=3.2e-08 Score=119.80 Aligned_cols=162 Identities=15% Similarity=0.093 Sum_probs=110.8
Q ss_pred CcccCCCchhHHHHHHHHHhccccCCCCcccEEEcCCCchHHHHHHHHHHHcCCCCCCCcchhhhhhhhccccccccccc
Q 001825 661 GVLAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGIQ 740 (1009)
Q Consensus 661 glLkv~LrPHQkegV~WMlqrE~s~~~~rGGILADEMGLGKTVqaIALIl~~r~~~~~~~~~~k~~~e~l~~de~~d~~~ 740 (1009)
+.....+|+||.+|++...+.-..+. +-++|.-..|.|||.+||++|..+.
T Consensus 160 ~~s~i~~RyyQ~~AI~rv~Eaf~~g~--~raLlvMATGTGKTrTAiaii~rL~--------------------------- 210 (875)
T COG4096 160 IDSAIGPRYYQIIAIRRVIEAFSKGQ--NRALLVMATGTGKTRTAIAIIDRLI--------------------------- 210 (875)
T ss_pred ccccccchHHHHHHHHHHHHHHhcCC--ceEEEEEecCCCcceeHHHHHHHHH---------------------------
Confidence 33567799999999999998766553 3499999999999999999996542
Q ss_pred cccccccccccccccccCCCCCCccchhhhhhcCCCCCcEEEEeCh-hhHHHHHHHHHHHhcCCCCcEEEEEcCCCCCCC
Q 001825 741 VNGLDLVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPT-SVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKD 819 (1009)
Q Consensus 741 ~~~~~~~k~~~~~C~~~s~~~s~~s~~~~~q~~~rpa~~TLIVcP~-SLL~QW~~EI~K~~~~~~~LkVlVy~Gs~R~k~ 819 (1009)
+....+++|.++-. +|+.|=..++.+|.|.....+.+--...
T Consensus 211 --------------------------------r~~~~KRVLFLaDR~~Lv~QA~~af~~~~P~~~~~n~i~~~~~----- 253 (875)
T COG4096 211 --------------------------------KSGWVKRVLFLADRNALVDQAYGAFEDFLPFGTKMNKIEDKKG----- 253 (875)
T ss_pred --------------------------------hcchhheeeEEechHHHHHHHHHHHHHhCCCccceeeeecccC-----
Confidence 12335679999975 5889999999999985433332211111
Q ss_pred cccccCCCEEEEehhhhhcccCCCCCCCchhHHHHhhhcCCCCCCcccccccccCCCCCCcccccccCCCCCCcchhhcc
Q 001825 820 PCELAKFDVVITTYSIVSMEVPKQPLGDKEDEEEKMKIEGEDLPPMYCSSSKKRKCPPSSDRKGSKQKKGPDGLLLDIVA 899 (1009)
Q Consensus 820 ~~~LakyDVVITTYstLs~ev~k~~l~d~dde~ek~~~e~~~~~~~~~ssskkRK~~~~s~kk~s~~kk~~d~~~~d~~~ 899 (1009)
...+.|+|.||.++....... + . ..
T Consensus 254 ---~~s~~i~lsTyqt~~~~~~~~--------------~-----------~---------------------------~~ 278 (875)
T COG4096 254 ---DTSSEIYLSTYQTMTGRIEQK--------------E-----------D---------------------------EY 278 (875)
T ss_pred ---CcceeEEEeehHHHHhhhhcc--------------c-----------c---------------------------cc
Confidence 126889999999985432110 0 0 01
Q ss_pred CcccccceeEEEEcccccccchhhHHHHHHHhcccCeEEEEeccCCC
Q 001825 900 GPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQ 946 (1009)
Q Consensus 900 s~L~~i~W~RVILDEAH~IKN~~Sq~skAl~~L~Ak~RW~LTGTPIQ 946 (1009)
.++..-.|++||+||||+- --+.++.+..--.-.+.+||+||-.
T Consensus 279 ~~f~~g~FDlIvIDEaHRg---i~~~~~~I~dYFdA~~~gLTATP~~ 322 (875)
T COG4096 279 RRFGPGFFDLIVIDEAHRG---IYSEWSSILDYFDAATQGLTATPKE 322 (875)
T ss_pred ccCCCCceeEEEechhhhh---HHhhhHHHHHHHHHHHHhhccCccc
Confidence 2245557999999999973 1222334444444556777999987
No 36
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=98.71 E-value=6.5e-08 Score=118.65 Aligned_cols=159 Identities=20% Similarity=0.254 Sum_probs=107.6
Q ss_pred ccCCCchhHHHHHHHHHhccccCCCCcccEEEcCCCchHHHHHHHHHHHcCCCCCCCcchhhhhhhhccccccccccccc
Q 001825 663 LAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGIQVN 742 (1009)
Q Consensus 663 Lkv~LrPHQkegV~WMlqrE~s~~~~rGGILADEMGLGKTVqaIALIl~~r~~~~~~~~~~k~~~e~l~~de~~d~~~~~ 742 (1009)
+..+|.++|++++.-+.+-.... .....+|.-++|.|||+.++..++...
T Consensus 258 l~f~lt~~Q~~ai~~I~~d~~~~-~~~~~Ll~~~TGSGKT~va~~~il~~~----------------------------- 307 (681)
T PRK10917 258 LPFELTGAQKRVVAEILADLASP-KPMNRLLQGDVGSGKTVVAALAALAAI----------------------------- 307 (681)
T ss_pred CCCCCCHHHHHHHHHHHHhhhcc-CCceEEEECCCCCcHHHHHHHHHHHHH-----------------------------
Confidence 45679999999999888754322 123468888999999998876664311
Q ss_pred cccccccccccccccCCCCCCccchhhhhhcCCCCCcEEEEeChh-hHHHHHHHHHHHhcCCCCcEEEEEcCCCCCCCc-
Q 001825 743 GLDLVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTS-VLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDP- 820 (1009)
Q Consensus 743 ~~~~~k~~~~~C~~~s~~~s~~s~~~~~q~~~rpa~~TLIVcP~S-LL~QW~~EI~K~~~~~~~LkVlVy~Gs~R~k~~- 820 (1009)
.....+||++|.- |..|+.+.+++++.. -.+++.+++|.......
T Consensus 308 --------------------------------~~g~q~lilaPT~~LA~Q~~~~l~~l~~~-~~i~v~ll~G~~~~~~r~ 354 (681)
T PRK10917 308 --------------------------------EAGYQAALMAPTEILAEQHYENLKKLLEP-LGIRVALLTGSLKGKERR 354 (681)
T ss_pred --------------------------------HcCCeEEEEeccHHHHHHHHHHHHHHHhh-cCcEEEEEcCCCCHHHHH
Confidence 0012489999996 679999999998762 34789999998653211
Q ss_pred ---ccc--cCCCEEEEehhhhhcccCCCCCCCchhHHHHhhhcCCCCCCcccccccccCCCCCCcccccccCCCCCCcch
Q 001825 821 ---CEL--AKFDVVITTYSIVSMEVPKQPLGDKEDEEEKMKIEGEDLPPMYCSSSKKRKCPPSSDRKGSKQKKGPDGLLL 895 (1009)
Q Consensus 821 ---~~L--akyDVVITTYstLs~ev~k~~l~d~dde~ek~~~e~~~~~~~~~ssskkRK~~~~s~kk~s~~kk~~d~~~~ 895 (1009)
..+ ...+|||.|+..+...+
T Consensus 355 ~~~~~l~~g~~~IvVgT~~ll~~~v------------------------------------------------------- 379 (681)
T PRK10917 355 EILEAIASGEADIVIGTHALIQDDV------------------------------------------------------- 379 (681)
T ss_pred HHHHHHhCCCCCEEEchHHHhcccc-------------------------------------------------------
Confidence 122 36899999987763210
Q ss_pred hhccCcccccceeEEEEcccccccchhhHHHHHHHhc-ccCeEEEEeccCCCCCH
Q 001825 896 DIVAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGL-RAKRRWCLSGTPIQNAI 949 (1009)
Q Consensus 896 d~~~s~L~~i~W~RVILDEAH~IKN~~Sq~skAl~~L-~Ak~RW~LTGTPIQNsL 949 (1009)
.+. ....||+||+|++.- .....+... .....++|||||++..+
T Consensus 380 -----~~~--~l~lvVIDE~Hrfg~---~qr~~l~~~~~~~~iL~~SATp~prtl 424 (681)
T PRK10917 380 -----EFH--NLGLVIIDEQHRFGV---EQRLALREKGENPHVLVMTATPIPRTL 424 (681)
T ss_pred -----hhc--ccceEEEechhhhhH---HHHHHHHhcCCCCCEEEEeCCCCHHHH
Confidence 011 235799999999732 223333333 24678999999987654
No 37
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=98.63 E-value=1.9e-07 Score=117.50 Aligned_cols=159 Identities=20% Similarity=0.246 Sum_probs=105.6
Q ss_pred cCCCchhHHHHHHHHHhccccCCCCcccEEEcCCCchHHHHHHHHHHHcCCCCCCCcchhhhhhhhcccccccccccccc
Q 001825 664 AVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGIQVNG 743 (1009)
Q Consensus 664 kv~LrPHQkegV~WMlqrE~s~~~~rGGILADEMGLGKTVqaIALIl~~r~~~~~~~~~~k~~~e~l~~de~~d~~~~~~ 743 (1009)
...|.|.|..++..+++-..+. .+...+|+-++|.|||..++..++..-
T Consensus 449 ~f~~T~~Q~~aI~~I~~d~~~~-~~~d~Ll~adTGsGKT~val~a~l~al------------------------------ 497 (926)
T TIGR00580 449 PFEETPDQLKAIEEIKADMESP-RPMDRLVCGDVGFGKTEVAMRAAFKAV------------------------------ 497 (926)
T ss_pred CCCCCHHHHHHHHHHHhhhccc-CcCCEEEECCCCccHHHHHHHHHHHHH------------------------------
Confidence 4568999999999998654322 224579999999999998765553210
Q ss_pred ccccccccccccccCCCCCCccchhhhhhcCCCCCcEEEEeChh-hHHHHHHHHHHHhcCCCCcEEEEEcCCCCCCCc--
Q 001825 744 LDLVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTS-VLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDP-- 820 (1009)
Q Consensus 744 ~~~~k~~~~~C~~~s~~~s~~s~~~~~q~~~rpa~~TLIVcP~S-LL~QW~~EI~K~~~~~~~LkVlVy~Gs~R~k~~-- 820 (1009)
.. ...+||+||.. |..|..+.|.+++.. -.+++.+++|.......
T Consensus 498 ----------------------------~~---g~qvlvLvPT~~LA~Q~~~~f~~~~~~-~~i~v~~Lsg~~~~~e~~~ 545 (926)
T TIGR00580 498 ----------------------------LD---GKQVAVLVPTTLLAQQHFETFKERFAN-FPVTIELLSRFRSAKEQNE 545 (926)
T ss_pred ----------------------------Hh---CCeEEEEeCcHHHHHHHHHHHHHHhcc-CCcEEEEEeccccHHHHHH
Confidence 00 12589999997 679999999988762 34677777765432211
Q ss_pred --ccc--cCCCEEEEehhhhhcccCCCCCCCchhHHHHhhhcCCCCCCcccccccccCCCCCCcccccccCCCCCCcchh
Q 001825 821 --CEL--AKFDVVITTYSIVSMEVPKQPLGDKEDEEEKMKIEGEDLPPMYCSSSKKRKCPPSSDRKGSKQKKGPDGLLLD 896 (1009)
Q Consensus 821 --~~L--akyDVVITTYstLs~ev~k~~l~d~dde~ek~~~e~~~~~~~~~ssskkRK~~~~s~kk~s~~kk~~d~~~~d 896 (1009)
..+ .+.||||+|+..+...+
T Consensus 546 ~~~~l~~g~~dIVIGTp~ll~~~v-------------------------------------------------------- 569 (926)
T TIGR00580 546 ILKELASGKIDILIGTHKLLQKDV-------------------------------------------------------- 569 (926)
T ss_pred HHHHHHcCCceEEEchHHHhhCCC--------------------------------------------------------
Confidence 112 36899999986553211
Q ss_pred hccCcccccceeEEEEcccccccchhhHHHHHHHhcc-cCeEEEEeccCCCCCHH
Q 001825 897 IVAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLR-AKRRWCLSGTPIQNAID 950 (1009)
Q Consensus 897 ~~~s~L~~i~W~RVILDEAH~IKN~~Sq~skAl~~L~-Ak~RW~LTGTPIQNsL~ 950 (1009)
.+. ...+||+||+|++.- .....+..+. ....++|||||++..+.
T Consensus 570 ----~f~--~L~llVIDEahrfgv---~~~~~L~~~~~~~~vL~~SATpiprtl~ 615 (926)
T TIGR00580 570 ----KFK--DLGLLIIDEEQRFGV---KQKEKLKELRTSVDVLTLSATPIPRTLH 615 (926)
T ss_pred ----Ccc--cCCEEEeecccccch---hHHHHHHhcCCCCCEEEEecCCCHHHHH
Confidence 011 235799999999742 2334455554 45789999999986654
No 38
>PRK10689 transcription-repair coupling factor; Provisional
Probab=98.62 E-value=2.2e-07 Score=119.20 Aligned_cols=159 Identities=16% Similarity=0.229 Sum_probs=104.8
Q ss_pred cCCCchhHHHHHHHHHhccccCCCCcccEEEcCCCchHHHHHHHHHHHcCCCCCCCcchhhhhhhhcccccccccccccc
Q 001825 664 AVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGIQVNG 743 (1009)
Q Consensus 664 kv~LrPHQkegV~WMlqrE~s~~~~rGGILADEMGLGKTVqaIALIl~~r~~~~~~~~~~k~~~e~l~~de~~d~~~~~~ 743 (1009)
...+.+.|..++.-++....+. .+...+++-++|.|||.+++-.+....
T Consensus 598 ~~~~T~~Q~~aI~~il~d~~~~-~~~d~Ll~a~TGsGKT~val~aa~~~~------------------------------ 646 (1147)
T PRK10689 598 PFETTPDQAQAINAVLSDMCQP-LAMDRLVCGDVGFGKTEVAMRAAFLAV------------------------------ 646 (1147)
T ss_pred CCCCCHHHHHHHHHHHHHhhcC-CCCCEEEEcCCCcCHHHHHHHHHHHHH------------------------------
Confidence 4568899999999877643322 235679999999999998764332200
Q ss_pred ccccccccccccccCCCCCCccchhhhhhcCCCCCcEEEEeChh-hHHHHHHHHHHHhcCCCCcEEEEEcCCCCCCCcc-
Q 001825 744 LDLVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTS-VLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPC- 821 (1009)
Q Consensus 744 ~~~~k~~~~~C~~~s~~~s~~s~~~~~q~~~rpa~~TLIVcP~S-LL~QW~~EI~K~~~~~~~LkVlVy~Gs~R~k~~~- 821 (1009)
.....+||+||.. |..|..+.+.+.+.. ..+++.+++|........
T Consensus 647 -------------------------------~~g~qvlvLvPT~eLA~Q~~~~f~~~~~~-~~v~i~~l~g~~s~~e~~~ 694 (1147)
T PRK10689 647 -------------------------------ENHKQVAVLVPTTLLAQQHYDNFRDRFAN-WPVRIEMLSRFRSAKEQTQ 694 (1147)
T ss_pred -------------------------------HcCCeEEEEeCcHHHHHHHHHHHHHhhcc-CCceEEEEECCCCHHHHHH
Confidence 0013589999997 669999999887652 236776776654332211
Q ss_pred ---cc--cCCCEEEEehhhhhcccCCCCCCCchhHHHHhhhcCCCCCCcccccccccCCCCCCcccccccCCCCCCcchh
Q 001825 822 ---EL--AKFDVVITTYSIVSMEVPKQPLGDKEDEEEKMKIEGEDLPPMYCSSSKKRKCPPSSDRKGSKQKKGPDGLLLD 896 (1009)
Q Consensus 822 ---~L--akyDVVITTYstLs~ev~k~~l~d~dde~ek~~~e~~~~~~~~~ssskkRK~~~~s~kk~s~~kk~~d~~~~d 896 (1009)
.+ ...||||+|+..+...+.
T Consensus 695 il~~l~~g~~dIVVgTp~lL~~~v~------------------------------------------------------- 719 (1147)
T PRK10689 695 ILAEAAEGKIDILIGTHKLLQSDVK------------------------------------------------------- 719 (1147)
T ss_pred HHHHHHhCCCCEEEECHHHHhCCCC-------------------------------------------------------
Confidence 11 367999999976632110
Q ss_pred hccCcccccceeEEEEcccccccchhhHHHHHHHhcc-cCeEEEEeccCCCCCHH
Q 001825 897 IVAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLR-AKRRWCLSGTPIQNAID 950 (1009)
Q Consensus 897 ~~~s~L~~i~W~RVILDEAH~IKN~~Sq~skAl~~L~-Ak~RW~LTGTPIQNsL~ 950 (1009)
+ -....||+||+|++.-. ....+..+. ....+++||||++..+.
T Consensus 720 -----~--~~L~lLVIDEahrfG~~---~~e~lk~l~~~~qvLl~SATpiprtl~ 764 (1147)
T PRK10689 720 -----W--KDLGLLIVDEEHRFGVR---HKERIKAMRADVDILTLTATPIPRTLN 764 (1147)
T ss_pred -----H--hhCCEEEEechhhcchh---HHHHHHhcCCCCcEEEEcCCCCHHHHH
Confidence 1 13567999999998432 234455554 45789999999987654
No 39
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.60 E-value=2.2e-07 Score=109.30 Aligned_cols=164 Identities=15% Similarity=0.137 Sum_probs=105.2
Q ss_pred CCchhHHHHHHHHHhccccCCCCcccEEEcCCCchHHHHHHHHHHHcCCCCCCCcchhhhhhhhcccccccccccccccc
Q 001825 666 PLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGIQVNGLD 745 (1009)
Q Consensus 666 ~LrPHQkegV~WMlqrE~s~~~~rGGILADEMGLGKTVqaIALIl~~r~~~~~~~~~~k~~~e~l~~de~~d~~~~~~~~ 745 (1009)
.++|+|.+++.-+++. +..++.-..|.|||+..+.-++..
T Consensus 11 ~~r~~Q~~ai~~~l~g-------~dvlv~apTGsGKTl~y~lp~l~~--------------------------------- 50 (470)
T TIGR00614 11 SFRPVQLEVINAVLLG-------RDCFVVMPTGGGKSLCYQLPALCS--------------------------------- 50 (470)
T ss_pred CCCHHHHHHHHHHHcC-------CCEEEEcCCCCcHhHHHHHHHHHc---------------------------------
Confidence 5899999999998853 457899999999998653322210
Q ss_pred ccccccccccccCCCCCCccchhhhhhcCCCCCcEEEEeCh-hhHHHHHHHHHHHhcCCCCcEEEEEcCCCCCCC-----
Q 001825 746 LVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPT-SVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKD----- 819 (1009)
Q Consensus 746 ~~k~~~~~C~~~s~~~s~~s~~~~~q~~~rpa~~TLIVcP~-SLL~QW~~EI~K~~~~~~~LkVlVy~Gs~R~k~----- 819 (1009)
.+.+|||+|. .|+.||.+.+... .+.+..+.+......
T Consensus 51 -------------------------------~~~~lVi~P~~~L~~dq~~~l~~~-----gi~~~~l~~~~~~~~~~~i~ 94 (470)
T TIGR00614 51 -------------------------------DGITLVISPLISLMEDQVLQLKAS-----GIPATFLNSSQSKEQQKNVL 94 (470)
T ss_pred -------------------------------CCcEEEEecHHHHHHHHHHHHHHc-----CCcEEEEeCCCCHHHHHHHH
Confidence 1248999998 5889999888753 255566655543221
Q ss_pred -cccccCCCEEEEehhhhhcccCCCCCCCchhHHHHhhhcCCCCCCcccccccccCCCCCCcccccccCCCCCCcchhhc
Q 001825 820 -PCELAKFDVVITTYSIVSMEVPKQPLGDKEDEEEKMKIEGEDLPPMYCSSSKKRKCPPSSDRKGSKQKKGPDGLLLDIV 898 (1009)
Q Consensus 820 -~~~LakyDVVITTYstLs~ev~k~~l~d~dde~ek~~~e~~~~~~~~~ssskkRK~~~~s~kk~s~~kk~~d~~~~d~~ 898 (1009)
.....+++++++|.+.+..... . .+
T Consensus 95 ~~~~~~~~~il~~TPe~l~~~~~---------~-------------------------------------------~~-- 120 (470)
T TIGR00614 95 TDLKDGKIKLLYVTPEKCSASNR---------L-------------------------------------------LQ-- 120 (470)
T ss_pred HHHhcCCCCEEEECHHHHcCchh---------H-------------------------------------------HH--
Confidence 1123468999999988743210 0 00
Q ss_pred cCcc-cccceeEEEEcccccccchhh-------HHHHHHHhcccCeEEEEeccCCCCCHHHHHHHHHhhCC
Q 001825 899 AGPL-AKVGWFRVVLDEAQSIKNHRT-------QVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRY 961 (1009)
Q Consensus 899 ~s~L-~~i~W~RVILDEAH~IKN~~S-------q~skAl~~L~Ak~RW~LTGTPIQNsL~DLySLLrFLrp 961 (1009)
.| ......+||+||||.+..... ........+.....++|||||......|+...+.+-.+
T Consensus 121 --~l~~~~~i~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~l~lTAT~~~~~~~di~~~l~l~~~ 189 (470)
T TIGR00614 121 --TLEERKGITLIAVDEAHCISQWGHDFRPDYKALGSLKQKFPNVPIMALTATASPSVREDILRQLNLKNP 189 (470)
T ss_pred --HHHhcCCcCEEEEeCCcccCccccccHHHHHHHHHHHHHcCCCceEEEecCCCHHHHHHHHHHcCCCCC
Confidence 01 223467899999999854321 11112223345568999999998887887776654443
No 40
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=98.57 E-value=6.3e-07 Score=103.84 Aligned_cols=170 Identities=17% Similarity=0.139 Sum_probs=105.1
Q ss_pred CCchhHHHHHHHHHhccccCCCCcccEEEcCCCchHHHHHHHHHHHcCCCCCCCcchhhhhhhhcccccccccccccccc
Q 001825 666 PLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGIQVNGLD 745 (1009)
Q Consensus 666 ~LrPHQkegV~WMlqrE~s~~~~rGGILADEMGLGKTVqaIALIl~~r~~~~~~~~~~k~~~e~l~~de~~d~~~~~~~~ 745 (1009)
.+.++|.+++..+++. +..|+.-..|.|||+..+..++..-..
T Consensus 23 ~p~~iQ~~ai~~~~~g-------~d~l~~apTGsGKT~~~~lp~l~~l~~------------------------------ 65 (434)
T PRK11192 23 RPTAIQAEAIPPALDG-------RDVLGSAPTGTGKTAAFLLPALQHLLD------------------------------ 65 (434)
T ss_pred CCCHHHHHHHHHHhCC-------CCEEEECCCCChHHHHHHHHHHHHHhh------------------------------
Confidence 3689999999988842 457888899999998875544331100
Q ss_pred ccccccccccccCCCCCCccchhhhhhcCCCCCcEEEEeChh-hHHHHHHHHHHHhcCCCCcEEEEEcCCCCCCCccc--
Q 001825 746 LVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTS-VLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCE-- 822 (1009)
Q Consensus 746 ~~k~~~~~C~~~s~~~s~~s~~~~~q~~~rpa~~TLIVcP~S-LL~QW~~EI~K~~~~~~~LkVlVy~Gs~R~k~~~~-- 822 (1009)
. . ........+|||+|.. |+.||.+.+..+.. ...+++..++|.........
T Consensus 66 ----~---~-----------------~~~~~~~~~lil~Pt~eLa~Q~~~~~~~l~~-~~~~~v~~~~gg~~~~~~~~~l 120 (434)
T PRK11192 66 ----F---P-----------------RRKSGPPRILILTPTRELAMQVADQARELAK-HTHLDIATITGGVAYMNHAEVF 120 (434)
T ss_pred ----c---c-----------------ccCCCCceEEEECCcHHHHHHHHHHHHHHHc-cCCcEEEEEECCCCHHHHHHHh
Confidence 0 0 0001123589999986 78999988887754 33478888888654322211
Q ss_pred ccCCCEEEEehhhhhcccCCCCCCCchhHHHHhhhcCCCCCCcccccccccCCCCCCcccccccCCCCCCcchhhccCcc
Q 001825 823 LAKFDVVITTYSIVSMEVPKQPLGDKEDEEEKMKIEGEDLPPMYCSSSKKRKCPPSSDRKGSKQKKGPDGLLLDIVAGPL 902 (1009)
Q Consensus 823 LakyDVVITTYstLs~ev~k~~l~d~dde~ek~~~e~~~~~~~~~ssskkRK~~~~s~kk~s~~kk~~d~~~~d~~~s~L 902 (1009)
....+|||+|.+.+...+.. ..+
T Consensus 121 ~~~~~IlV~Tp~rl~~~~~~---------------------------------------------------------~~~ 143 (434)
T PRK11192 121 SENQDIVVATPGRLLQYIKE---------------------------------------------------------ENF 143 (434)
T ss_pred cCCCCEEEEChHHHHHHHHc---------------------------------------------------------CCc
Confidence 24679999999887532110 001
Q ss_pred cccceeEEEEcccccccchh--hHHHHHHHhcc-cCeEEEEeccCCCCCHHHHHH
Q 001825 903 AKVGWFRVVLDEAQSIKNHR--TQVARACWGLR-AKRRWCLSGTPIQNAIDDLYS 954 (1009)
Q Consensus 903 ~~i~W~RVILDEAH~IKN~~--Sq~skAl~~L~-Ak~RW~LTGTPIQNsL~DLyS 954 (1009)
..-.+.+||+||||++-... ......+..+. ....+++|||+....+.++..
T Consensus 144 ~~~~v~~lViDEah~~l~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~ 198 (434)
T PRK11192 144 DCRAVETLILDEADRMLDMGFAQDIETIAAETRWRKQTLLFSATLEGDAVQDFAE 198 (434)
T ss_pred CcccCCEEEEECHHHHhCCCcHHHHHHHHHhCccccEEEEEEeecCHHHHHHHHH
Confidence 12235679999999885432 22222333333 345689999987555555443
No 41
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=98.56 E-value=8.3e-07 Score=103.83 Aligned_cols=108 Identities=20% Similarity=0.164 Sum_probs=73.7
Q ss_pred CCchhHHHHHHHHHhccccCCCCcccEEEcCCCchHHHHHHHHHHHcCCCCCCCcchhhhhhhhcccccccccccccccc
Q 001825 666 PLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGIQVNGLD 745 (1009)
Q Consensus 666 ~LrPHQkegV~WMlqrE~s~~~~rGGILADEMGLGKTVqaIALIl~~r~~~~~~~~~~k~~~e~l~~de~~d~~~~~~~~ 745 (1009)
.+.|+|..++..+++- +..|+.-..|.|||+..+..++....
T Consensus 26 ~~t~iQ~~ai~~~l~g-------~dvi~~a~TGsGKT~a~~lpil~~l~------------------------------- 67 (460)
T PRK11776 26 EMTPIQAQSLPAILAG-------KDVIAQAKTGSGKTAAFGLGLLQKLD------------------------------- 67 (460)
T ss_pred CCCHHHHHHHHHHhcC-------CCEEEECCCCCcHHHHHHHHHHHHhh-------------------------------
Confidence 3789999999988842 56789999999999765444432110
Q ss_pred ccccccccccccCCCCCCccchhhhhhcCCCCCcEEEEeChh-hHHHHHHHHHHHhcCCCCcEEEEEcCCCCCCC-ccc-
Q 001825 746 LVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTS-VLRQWAEELRNKVTSKGSLSVLVYHGSSRTKD-PCE- 822 (1009)
Q Consensus 746 ~~k~~~~~C~~~s~~~s~~s~~~~~q~~~rpa~~TLIVcP~S-LL~QW~~EI~K~~~~~~~LkVlVy~Gs~R~k~-~~~- 822 (1009)
.......+|||||.- |..||.++++++......+++..++|...... ...
T Consensus 68 ---------------------------~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~v~~~~Gg~~~~~~~~~l 120 (460)
T PRK11776 68 ---------------------------VKRFRVQALVLCPTRELADQVAKEIRRLARFIPNIKVLTLCGGVPMGPQIDSL 120 (460)
T ss_pred ---------------------------hccCCceEEEEeCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCCChHHHHHHh
Confidence 000011479999985 88999999998764334678888887653321 111
Q ss_pred ccCCCEEEEehhhhhc
Q 001825 823 LAKFDVVITTYSIVSM 838 (1009)
Q Consensus 823 LakyDVVITTYstLs~ 838 (1009)
....+|||+|.+.+..
T Consensus 121 ~~~~~IvV~Tp~rl~~ 136 (460)
T PRK11776 121 EHGAHIIVGTPGRILD 136 (460)
T ss_pred cCCCCEEEEChHHHHH
Confidence 2467999999988854
No 42
>PRK01172 ski2-like helicase; Provisional
Probab=98.50 E-value=1.2e-06 Score=107.24 Aligned_cols=102 Identities=23% Similarity=0.263 Sum_probs=73.1
Q ss_pred CCCchhHHHHHHHHHhccccCCCCcccEEEcCCCchHHHHHHHHHHHcCCCCCCCcchhhhhhhhccccccccccccccc
Q 001825 665 VPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGIQVNGL 744 (1009)
Q Consensus 665 v~LrPHQkegV~WMlqrE~s~~~~rGGILADEMGLGKTVqaIALIl~~r~~~~~~~~~~k~~~e~l~~de~~d~~~~~~~ 744 (1009)
..|+|+|.+++..+... +..|++-..|.|||+.+...|+...
T Consensus 21 ~~l~~~Q~~ai~~l~~~-------~nvlv~apTGSGKTl~a~lail~~l------------------------------- 62 (674)
T PRK01172 21 FELYDHQRMAIEQLRKG-------ENVIVSVPTAAGKTLIAYSAIYETF------------------------------- 62 (674)
T ss_pred CCCCHHHHHHHHHHhcC-------CcEEEECCCCchHHHHHHHHHHHHH-------------------------------
Confidence 45899999999986432 4579999999999998775554311
Q ss_pred cccccccccccccCCCCCCccchhhhhhcCCCCCcEEEEeCh-hhHHHHHHHHHHHhcCCCCcEEEEEcCCCCCCCcccc
Q 001825 745 DLVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPT-SVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCEL 823 (1009)
Q Consensus 745 ~~~k~~~~~C~~~s~~~s~~s~~~~~q~~~rpa~~TLIVcP~-SLL~QW~~EI~K~~~~~~~LkVlVy~Gs~R~k~~~~L 823 (1009)
...+.+|+|+|. +|+.|+.+++.++.. ..+++.+..|.... ....+
T Consensus 63 ------------------------------~~~~k~v~i~P~raLa~q~~~~~~~l~~--~g~~v~~~~G~~~~-~~~~~ 109 (674)
T PRK01172 63 ------------------------------LAGLKSIYIVPLRSLAMEKYEELSRLRS--LGMRVKISIGDYDD-PPDFI 109 (674)
T ss_pred ------------------------------HhCCcEEEEechHHHHHHHHHHHHHHhh--cCCeEEEEeCCCCC-Chhhh
Confidence 001357999997 588999999987643 24677777776433 23345
Q ss_pred cCCCEEEEehhhhh
Q 001825 824 AKFDVVITTYSIVS 837 (1009)
Q Consensus 824 akyDVVITTYstLs 837 (1009)
..+||+|+|++.+.
T Consensus 110 ~~~dIiv~Tpek~~ 123 (674)
T PRK01172 110 KRYDVVILTSEKAD 123 (674)
T ss_pred ccCCEEEECHHHHH
Confidence 67899999998763
No 43
>PTZ00424 helicase 45; Provisional
Probab=98.49 E-value=9.4e-07 Score=100.75 Aligned_cols=158 Identities=18% Similarity=0.099 Sum_probs=98.6
Q ss_pred CCchhHHHHHHHHHhccccCCCCcccEEEcCCCchHHHHHHHHHHHcCCCCCCCcchhhhhhhhcccccccccccccccc
Q 001825 666 PLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGIQVNGLD 745 (1009)
Q Consensus 666 ~LrPHQkegV~WMlqrE~s~~~~rGGILADEMGLGKTVqaIALIl~~r~~~~~~~~~~k~~~e~l~~de~~d~~~~~~~~ 745 (1009)
.+.|+|..++..++.. +..|+.-..|.|||+.++-.++....
T Consensus 50 ~~~~~Q~~ai~~i~~~-------~d~ii~apTGsGKT~~~~l~~l~~~~------------------------------- 91 (401)
T PTZ00424 50 KPSAIQQRGIKPILDG-------YDTIGQAQSGTGKTATFVIAALQLID------------------------------- 91 (401)
T ss_pred CCCHHHHHHHHHHhCC-------CCEEEECCCCChHHHHHHHHHHHHhc-------------------------------
Confidence 4799999999998853 45788899999999876544433110
Q ss_pred ccccccccccccCCCCCCccchhhhhhcCCCCCcEEEEeChh-hHHHHHHHHHHHhcCCCCcEEEEEcCCCCCCC-cccc
Q 001825 746 LVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTS-VLRQWAEELRNKVTSKGSLSVLVYHGSSRTKD-PCEL 823 (1009)
Q Consensus 746 ~~k~~~~~C~~~s~~~s~~s~~~~~q~~~rpa~~TLIVcP~S-LL~QW~~EI~K~~~~~~~LkVlVy~Gs~R~k~-~~~L 823 (1009)
.......+|||+|.- |+.|+.+.+..+.. ...+.+....|...... ...+
T Consensus 92 ---------------------------~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~ 143 (401)
T PTZ00424 92 ---------------------------YDLNACQALILAPTRELAQQIQKVVLALGD-YLKVRCHACVGGTVVRDDINKL 143 (401)
T ss_pred ---------------------------CCCCCceEEEECCCHHHHHHHHHHHHHHhh-hcCceEEEEECCcCHHHHHHHH
Confidence 000123589999985 77999888877654 22345555555433221 1122
Q ss_pred -cCCCEEEEehhhhhcccCCCCCCCchhHHHHhhhcCCCCCCcccccccccCCCCCCcccccccCCCCCCcchhhccCcc
Q 001825 824 -AKFDVVITTYSIVSMEVPKQPLGDKEDEEEKMKIEGEDLPPMYCSSSKKRKCPPSSDRKGSKQKKGPDGLLLDIVAGPL 902 (1009)
Q Consensus 824 -akyDVVITTYstLs~ev~k~~l~d~dde~ek~~~e~~~~~~~~~ssskkRK~~~~s~kk~s~~kk~~d~~~~d~~~s~L 902 (1009)
...+|+|+|.+.+...+.+ ..+
T Consensus 144 ~~~~~Ivv~Tp~~l~~~l~~---------------------------------------------------------~~~ 166 (401)
T PTZ00424 144 KAGVHMVVGTPGRVYDMIDK---------------------------------------------------------RHL 166 (401)
T ss_pred cCCCCEEEECcHHHHHHHHh---------------------------------------------------------CCc
Confidence 3468999998877432110 001
Q ss_pred cccceeEEEEcccccccc--hhhHHHHHHHhccc-CeEEEEeccCCC
Q 001825 903 AKVGWFRVVLDEAQSIKN--HRTQVARACWGLRA-KRRWCLSGTPIQ 946 (1009)
Q Consensus 903 ~~i~W~RVILDEAH~IKN--~~Sq~skAl~~L~A-k~RW~LTGTPIQ 946 (1009)
.--.+++||+||||.+.. ........+..+.. ...+++|||+..
T Consensus 167 ~l~~i~lvViDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~ 213 (401)
T PTZ00424 167 RVDDLKLFILDEADEMLSRGFKGQIYDVFKKLPPDVQVALFSATMPN 213 (401)
T ss_pred ccccccEEEEecHHHHHhcchHHHHHHHHhhCCCCcEEEEEEecCCH
Confidence 112357899999998754 33445555666643 467889999753
No 44
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=98.49 E-value=1.7e-06 Score=100.53 Aligned_cols=173 Identities=18% Similarity=0.157 Sum_probs=123.0
Q ss_pred CCCchhHHHHHHHHHhccccCCCCcccEEEcCCCchHHHHHHHHHHHcCCCCCCCcchhhhhhhhccccccccccccccc
Q 001825 665 VPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGIQVNGL 744 (1009)
Q Consensus 665 v~LrPHQkegV~WMlqrE~s~~~~rGGILADEMGLGKTVqaIALIl~~r~~~~~~~~~~k~~~e~l~~de~~d~~~~~~~ 744 (1009)
+.-|.||..-++-.+.+ ..+++=..|||||+.|+.+|+...
T Consensus 14 ie~R~YQ~~i~a~al~~--------NtLvvlPTGLGKT~IA~~V~~~~l------------------------------- 54 (542)
T COG1111 14 IEPRLYQLNIAAKALFK--------NTLVVLPTGLGKTFIAAMVIANRL------------------------------- 54 (542)
T ss_pred ccHHHHHHHHHHHHhhc--------CeEEEecCCccHHHHHHHHHHHHH-------------------------------
Confidence 45688999888877753 578999999999999987775421
Q ss_pred cccccccccccccCCCCCCccchhhhhhcCCCCCcEEEEeCh-hhHHHHHHHHHHHhcCCCCcEEEEEcCCCCCC-Cccc
Q 001825 745 DLVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPT-SVLRQWAEELRNKVTSKGSLSVLVYHGSSRTK-DPCE 822 (1009)
Q Consensus 745 ~~~k~~~~~C~~~s~~~s~~s~~~~~q~~~rpa~~TLIVcP~-SLL~QW~~EI~K~~~~~~~LkVlVy~Gs~R~k-~~~~ 822 (1009)
+ ...+..|+++|. .|+.|-++-+++.+. -+.-.+..+.|.-+.. ....
T Consensus 55 ----------------------------~-~~~~kvlfLAPTKPLV~Qh~~~~~~v~~-ip~~~i~~ltGev~p~~R~~~ 104 (542)
T COG1111 55 ----------------------------R-WFGGKVLFLAPTKPLVLQHAEFCRKVTG-IPEDEIAALTGEVRPEEREEL 104 (542)
T ss_pred ----------------------------H-hcCCeEEEecCCchHHHHHHHHHHHHhC-CChhheeeecCCCChHHHHHH
Confidence 0 011258999997 599999999998876 3456888899987654 3455
Q ss_pred ccCCCEEEEehhhhhcccCCCCCCCchhHHHHhhhcCCCCCCcccccccccCCCCCCcccccccCCCCCCcchhhccCcc
Q 001825 823 LAKFDVVITTYSIVSMEVPKQPLGDKEDEEEKMKIEGEDLPPMYCSSSKKRKCPPSSDRKGSKQKKGPDGLLLDIVAGPL 902 (1009)
Q Consensus 823 LakyDVVITTYstLs~ev~k~~l~d~dde~ek~~~e~~~~~~~~~ssskkRK~~~~s~kk~s~~kk~~d~~~~d~~~s~L 902 (1009)
+.+..|++.|-+++.+++. .+.+
T Consensus 105 w~~~kVfvaTPQvveNDl~---------------------------------------------------------~Gri 127 (542)
T COG1111 105 WAKKKVFVATPQVVENDLK---------------------------------------------------------AGRI 127 (542)
T ss_pred HhhCCEEEeccHHHHhHHh---------------------------------------------------------cCcc
Confidence 7899999999999866432 1223
Q ss_pred cccceeEEEEcccccccchhh--HHHHHHHhc-ccCeEEEEeccCCCCCHHHHHHHHHhhCCCCC
Q 001825 903 AKVGWFRVVLDEAQSIKNHRT--QVARACWGL-RAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPF 964 (1009)
Q Consensus 903 ~~i~W~RVILDEAH~IKN~~S--q~skAl~~L-~Ak~RW~LTGTPIQNsL~DLySLLrFLrp~pf 964 (1009)
..-.+..||+||||+.-+..+ .+++....- ...+.++|||||= ++++.+...++=|+.+..
T Consensus 128 d~~dv~~lifDEAHRAvGnyAYv~Va~~y~~~~k~~~ilgLTASPG-s~~ekI~eV~~nLgIe~v 191 (542)
T COG1111 128 DLDDVSLLIFDEAHRAVGNYAYVFVAKEYLRSAKNPLILGLTASPG-SDLEKIQEVVENLGIEKV 191 (542)
T ss_pred ChHHceEEEechhhhccCcchHHHHHHHHHHhccCceEEEEecCCC-CCHHHHHHHHHhCCcceE
Confidence 444577899999999754333 333332222 3346899999995 566777777777777664
No 45
>PRK02362 ski2-like helicase; Provisional
Probab=98.48 E-value=2e-06 Score=106.58 Aligned_cols=102 Identities=19% Similarity=0.126 Sum_probs=74.4
Q ss_pred CCchhHHHHHHHHHhccccCCCCcccEEEcCCCchHHHHHHHHHHHcCCCCCCCcchhhhhhhhcccccccccccccccc
Q 001825 666 PLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGIQVNGLD 745 (1009)
Q Consensus 666 ~LrPHQkegV~WMlqrE~s~~~~rGGILADEMGLGKTVqaIALIl~~r~~~~~~~~~~k~~~e~l~~de~~d~~~~~~~~ 745 (1009)
.|+|+|.+++.-++.. .+..|++=..|.|||+.+...|+...
T Consensus 23 ~l~p~Q~~ai~~~~~~------g~nvlv~APTGSGKTlia~lail~~l-------------------------------- 64 (737)
T PRK02362 23 ELYPPQAEAVEAGLLD------GKNLLAAIPTASGKTLIAELAMLKAI-------------------------------- 64 (737)
T ss_pred cCCHHHHHHHHHHHhC------CCcEEEECCCcchHHHHHHHHHHHHH--------------------------------
Confidence 5899999999764432 14679999999999998865554311
Q ss_pred ccccccccccccCCCCCCccchhhhhhcCCCCCcEEEEeCh-hhHHHHHHHHHHHhcCCCCcEEEEEcCCCCCCCccccc
Q 001825 746 LVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPT-SVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCELA 824 (1009)
Q Consensus 746 ~~k~~~~~C~~~s~~~s~~s~~~~~q~~~rpa~~TLIVcP~-SLL~QW~~EI~K~~~~~~~LkVlVy~Gs~R~k~~~~La 824 (1009)
.+.+.+|+|+|. .|+.|+.++|.++.. ..+++.+++|..... ...+.
T Consensus 65 -----------------------------~~~~kal~i~P~raLa~q~~~~~~~~~~--~g~~v~~~tGd~~~~-~~~l~ 112 (737)
T PRK02362 65 -----------------------------ARGGKALYIVPLRALASEKFEEFERFEE--LGVRVGISTGDYDSR-DEWLG 112 (737)
T ss_pred -----------------------------hcCCcEEEEeChHHHHHHHHHHHHHhhc--CCCEEEEEeCCcCcc-ccccC
Confidence 012358999997 588999999987632 247888888875432 23456
Q ss_pred CCCEEEEehhhhh
Q 001825 825 KFDVVITTYSIVS 837 (1009)
Q Consensus 825 kyDVVITTYstLs 837 (1009)
..||+|+|++.+.
T Consensus 113 ~~~IiV~Tpek~~ 125 (737)
T PRK02362 113 DNDIIVATSEKVD 125 (737)
T ss_pred CCCEEEECHHHHH
Confidence 7899999998763
No 46
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=98.47 E-value=1.2e-06 Score=102.76 Aligned_cols=112 Identities=21% Similarity=0.236 Sum_probs=72.3
Q ss_pred CCchhHHHHHHHHHhccccCCCCcccEEEcCCCchHHHHHHHHHHHcCCCCCCCcchhhhhhhhcccccccccccccccc
Q 001825 666 PLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGIQVNGLD 745 (1009)
Q Consensus 666 ~LrPHQkegV~WMlqrE~s~~~~rGGILADEMGLGKTVqaIALIl~~r~~~~~~~~~~k~~~e~l~~de~~d~~~~~~~~ 745 (1009)
.+.|+|..++.-+++. +..|+.-..|.|||+..+..++..-.. .
T Consensus 23 ~pt~iQ~~ai~~il~g-------~dvlv~apTGsGKTla~~lpil~~l~~-----------------~------------ 66 (456)
T PRK10590 23 EPTPIQQQAIPAVLEG-------RDLMASAQTGTGKTAGFTLPLLQHLIT-----------------R------------ 66 (456)
T ss_pred CCCHHHHHHHHHHhCC-------CCEEEECCCCCcHHHHHHHHHHHHhhh-----------------c------------
Confidence 4789999999988742 557888899999999876554432100 0
Q ss_pred ccccccccccccCCCCCCccchhhhhhcCCCCCcEEEEeChh-hHHHHHHHHHHHhcCCCCcEEEEEcCCCCCC-Cccc-
Q 001825 746 LVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTS-VLRQWAEELRNKVTSKGSLSVLVYHGSSRTK-DPCE- 822 (1009)
Q Consensus 746 ~~k~~~~~C~~~s~~~s~~s~~~~~q~~~rpa~~TLIVcP~S-LL~QW~~EI~K~~~~~~~LkVlVy~Gs~R~k-~~~~- 822 (1009)
.. .........+|||||.- |+.||.+++.++... ..+++....|..... ....
T Consensus 67 ----~~-------------------~~~~~~~~~aLil~PtreLa~Qi~~~~~~~~~~-~~~~~~~~~gg~~~~~~~~~l 122 (456)
T PRK10590 67 ----QP-------------------HAKGRRPVRALILTPTRELAAQIGENVRDYSKY-LNIRSLVVFGGVSINPQMMKL 122 (456)
T ss_pred ----cc-------------------ccccCCCceEEEEeCcHHHHHHHHHHHHHHhcc-CCCEEEEEECCcCHHHHHHHH
Confidence 00 00001112589999985 889999999987652 346666666654321 1111
Q ss_pred ccCCCEEEEehhhhh
Q 001825 823 LAKFDVVITTYSIVS 837 (1009)
Q Consensus 823 LakyDVVITTYstLs 837 (1009)
...+||||+|.+.+.
T Consensus 123 ~~~~~IiV~TP~rL~ 137 (456)
T PRK10590 123 RGGVDVLVATPGRLL 137 (456)
T ss_pred cCCCcEEEEChHHHH
Confidence 246899999998874
No 47
>PRK00254 ski2-like helicase; Provisional
Probab=98.45 E-value=2.7e-06 Score=105.15 Aligned_cols=161 Identities=19% Similarity=0.152 Sum_probs=104.3
Q ss_pred CCCchhHHHHHH-HHHhccccCCCCcccEEEcCCCchHHHHHHHHHHHcCCCCCCCcchhhhhhhhcccccccccccccc
Q 001825 665 VPLLRHQRIALS-WMVQKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGIQVNG 743 (1009)
Q Consensus 665 v~LrPHQkegV~-WMlqrE~s~~~~rGGILADEMGLGKTVqaIALIl~~r~~~~~~~~~~k~~~e~l~~de~~d~~~~~~ 743 (1009)
..|+|+|.+++. ++... +..|++-..|.|||+.+...|+...
T Consensus 22 ~~l~~~Q~~ai~~~~~~g-------~nvlv~apTGsGKT~~~~l~il~~l------------------------------ 64 (720)
T PRK00254 22 EELYPPQAEALKSGVLEG-------KNLVLAIPTASGKTLVAEIVMVNKL------------------------------ 64 (720)
T ss_pred CCCCHHHHHHHHHHHhCC-------CcEEEECCCCcHHHHHHHHHHHHHH------------------------------
Confidence 358999999996 44421 4579999999999998855553310
Q ss_pred ccccccccccccccCCCCCCccchhhhhhcCCCCCcEEEEeCh-hhHHHHHHHHHHHhcCCCCcEEEEEcCCCCCCCccc
Q 001825 744 LDLVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPT-SVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCE 822 (1009)
Q Consensus 744 ~~~~k~~~~~C~~~s~~~s~~s~~~~~q~~~rpa~~TLIVcP~-SLL~QW~~EI~K~~~~~~~LkVlVy~Gs~R~k~~~~ 822 (1009)
. ...+.+|+|+|. .|+.|+.+++.++.. -.+++..++|..... ...
T Consensus 65 ---~---------------------------~~~~~~l~l~P~~aLa~q~~~~~~~~~~--~g~~v~~~~Gd~~~~-~~~ 111 (720)
T PRK00254 65 ---L---------------------------REGGKAVYLVPLKALAEEKYREFKDWEK--LGLRVAMTTGDYDST-DEW 111 (720)
T ss_pred ---H---------------------------hcCCeEEEEeChHHHHHHHHHHHHHHhh--cCCEEEEEeCCCCCc-hhh
Confidence 0 001358999997 488999999987532 357888888875432 234
Q ss_pred ccCCCEEEEehhhhhcccCCCCCCCchhHHHHhhhcCCCCCCcccccccccCCCCCCcccccccCCCCCCcchhhccCcc
Q 001825 823 LAKFDVVITTYSIVSMEVPKQPLGDKEDEEEKMKIEGEDLPPMYCSSSKKRKCPPSSDRKGSKQKKGPDGLLLDIVAGPL 902 (1009)
Q Consensus 823 LakyDVVITTYstLs~ev~k~~l~d~dde~ek~~~e~~~~~~~~~ssskkRK~~~~s~kk~s~~kk~~d~~~~d~~~s~L 902 (1009)
+.+++|+|+|.+.+...... + ...+
T Consensus 112 ~~~~~IiV~Tpe~~~~ll~~-----------------------------~--------------------------~~~l 136 (720)
T PRK00254 112 LGKYDIIIATAEKFDSLLRH-----------------------------G--------------------------SSWI 136 (720)
T ss_pred hccCCEEEEcHHHHHHHHhC-----------------------------C--------------------------chhh
Confidence 56789999998876322100 0 0001
Q ss_pred cccceeEEEEcccccccch--hhHHHHHHHhc-ccCeEEEEeccCCCCCHHHHHH
Q 001825 903 AKVGWFRVVLDEAQSIKNH--RTQVARACWGL-RAKRRWCLSGTPIQNAIDDLYS 954 (1009)
Q Consensus 903 ~~i~W~RVILDEAH~IKN~--~Sq~skAl~~L-~Ak~RW~LTGTPIQNsL~DLyS 954 (1009)
. ....||+||+|.+... .......+..+ ...+.++||||.- | ..++-.
T Consensus 137 ~--~l~lvViDE~H~l~~~~rg~~le~il~~l~~~~qiI~lSATl~-n-~~~la~ 187 (720)
T PRK00254 137 K--DVKLVVADEIHLIGSYDRGATLEMILTHMLGRAQILGLSATVG-N-AEELAE 187 (720)
T ss_pred h--cCCEEEEcCcCccCCccchHHHHHHHHhcCcCCcEEEEEccCC-C-HHHHHH
Confidence 1 3468999999998642 23333334444 3457789999974 3 566554
No 48
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=98.43 E-value=1.9e-06 Score=102.70 Aligned_cols=165 Identities=17% Similarity=0.116 Sum_probs=101.4
Q ss_pred CCchhHHHHHHHHHhccccCCCCcccEEEcCCCchHHHHHHHHHHHcCCCCCCCcchhhhhhhhcccccccccccccccc
Q 001825 666 PLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGIQVNGLD 745 (1009)
Q Consensus 666 ~LrPHQkegV~WMlqrE~s~~~~rGGILADEMGLGKTVqaIALIl~~r~~~~~~~~~~k~~~e~l~~de~~d~~~~~~~~ 745 (1009)
.+.|+|..++..++.. +..|+.-..|.|||+..+.-++..-.
T Consensus 143 ~ptpiQ~~aip~il~g-------~dviv~ApTGSGKTlayllPil~~l~------------------------------- 184 (518)
T PLN00206 143 FPTPIQMQAIPAALSG-------RSLLVSADTGSGKTASFLVPIISRCC------------------------------- 184 (518)
T ss_pred CCCHHHHHHHHHHhcC-------CCEEEEecCCCCccHHHHHHHHHHHH-------------------------------
Confidence 5789999999988742 55789999999999987654432100
Q ss_pred ccccccccccccCCCCCCccchhhhhhcCCCCCcEEEEeChh-hHHHHHHHHHHHhcCCCCcEEEEEc-CCCCCCCccc-
Q 001825 746 LVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTS-VLRQWAEELRNKVTSKGSLSVLVYH-GSSRTKDPCE- 822 (1009)
Q Consensus 746 ~~k~~~~~C~~~s~~~s~~s~~~~~q~~~rpa~~TLIVcP~S-LL~QW~~EI~K~~~~~~~LkVlVy~-Gs~R~k~~~~- 822 (1009)
...... ........+|||+|.- |+.|+.++++.+.... .+++..+. |.........
T Consensus 185 --~~~~~~------------------~~~~~~~~aLIL~PTreLa~Qi~~~~~~l~~~~-~~~~~~~~gG~~~~~q~~~l 243 (518)
T PLN00206 185 --TIRSGH------------------PSEQRNPLAMVLTPTRELCVQVEDQAKVLGKGL-PFKTALVVGGDAMPQQLYRI 243 (518)
T ss_pred --hhcccc------------------ccccCCceEEEEeCCHHHHHHHHHHHHHHhCCC-CceEEEEECCcchHHHHHHh
Confidence 000000 0000123589999985 7899999998775422 34554444 4432222222
Q ss_pred ccCCCEEEEehhhhhcccCCCCCCCchhHHHHhhhcCCCCCCcccccccccCCCCCCcccccccCCCCCCcchhhccCcc
Q 001825 823 LAKFDVVITTYSIVSMEVPKQPLGDKEDEEEKMKIEGEDLPPMYCSSSKKRKCPPSSDRKGSKQKKGPDGLLLDIVAGPL 902 (1009)
Q Consensus 823 LakyDVVITTYstLs~ev~k~~l~d~dde~ek~~~e~~~~~~~~~ssskkRK~~~~s~kk~s~~kk~~d~~~~d~~~s~L 902 (1009)
....+|||+|.+.+...+.+ . ...|
T Consensus 244 ~~~~~IiV~TPgrL~~~l~~-----------------~--------------------------------------~~~l 268 (518)
T PLN00206 244 QQGVELIVGTPGRLIDLLSK-----------------H--------------------------------------DIEL 268 (518)
T ss_pred cCCCCEEEECHHHHHHHHHc-----------------C--------------------------------------Cccc
Confidence 24589999999887432210 0 0002
Q ss_pred cccceeEEEEcccccccc--hhhHHHHHHHhcccCeEEEEeccCCC
Q 001825 903 AKVGWFRVVLDEAQSIKN--HRTQVARACWGLRAKRRWCLSGTPIQ 946 (1009)
Q Consensus 903 ~~i~W~RVILDEAH~IKN--~~Sq~skAl~~L~Ak~RW~LTGTPIQ 946 (1009)
. ...+||+||||.+-. ......+.+..+.....+++|||...
T Consensus 269 ~--~v~~lViDEad~ml~~gf~~~i~~i~~~l~~~q~l~~SATl~~ 312 (518)
T PLN00206 269 D--NVSVLVLDEVDCMLERGFRDQVMQIFQALSQPQVLLFSATVSP 312 (518)
T ss_pred h--heeEEEeecHHHHhhcchHHHHHHHHHhCCCCcEEEEEeeCCH
Confidence 2 245799999998854 34455556666777788999999743
No 49
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=98.42 E-value=1.6e-06 Score=105.21 Aligned_cols=162 Identities=15% Similarity=0.137 Sum_probs=102.4
Q ss_pred CCchhHHHHHHHHHhccccCCCCcccEEEcCCCchHHHHHHHHHHHcCCCCCCCcchhhhhhhhcccccccccccccccc
Q 001825 666 PLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGIQVNGLD 745 (1009)
Q Consensus 666 ~LrPHQkegV~WMlqrE~s~~~~rGGILADEMGLGKTVqaIALIl~~r~~~~~~~~~~k~~~e~l~~de~~d~~~~~~~~ 745 (1009)
.++|+|.+++.-++.. +..++.-..|.|||+..+.-++..
T Consensus 25 ~~r~~Q~~ai~~il~g-------~dvlv~apTGsGKTl~y~lpal~~--------------------------------- 64 (607)
T PRK11057 25 QFRPGQQEIIDAVLSG-------RDCLVVMPTGGGKSLCYQIPALVL--------------------------------- 64 (607)
T ss_pred CCCHHHHHHHHHHHcC-------CCEEEEcCCCchHHHHHHHHHHHc---------------------------------
Confidence 4799999999988742 567888899999998654333220
Q ss_pred ccccccccccccCCCCCCccchhhhhhcCCCCCcEEEEeCh-hhHHHHHHHHHHHhcCCCCcEEEEEcCCCCCCCc----
Q 001825 746 LVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPT-SVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDP---- 820 (1009)
Q Consensus 746 ~~k~~~~~C~~~s~~~s~~s~~~~~q~~~rpa~~TLIVcP~-SLL~QW~~EI~K~~~~~~~LkVlVy~Gs~R~k~~---- 820 (1009)
.+.+|||+|. +|+.||.+.+... .+.+..+++.......
T Consensus 65 -------------------------------~g~tlVisPl~sL~~dqv~~l~~~-----gi~~~~~~s~~~~~~~~~~~ 108 (607)
T PRK11057 65 -------------------------------DGLTLVVSPLISLMKDQVDQLLAN-----GVAAACLNSTQTREQQLEVM 108 (607)
T ss_pred -------------------------------CCCEEEEecHHHHHHHHHHHHHHc-----CCcEEEEcCCCCHHHHHHHH
Confidence 1348999998 5788999888754 2455555554322111
Q ss_pred --ccccCCCEEEEehhhhhcccCCCCCCCchhHHHHhhhcCCCCCCcccccccccCCCCCCcccccccCCCCCCcchhhc
Q 001825 821 --CELAKFDVVITTYSIVSMEVPKQPLGDKEDEEEKMKIEGEDLPPMYCSSSKKRKCPPSSDRKGSKQKKGPDGLLLDIV 898 (1009)
Q Consensus 821 --~~LakyDVVITTYstLs~ev~k~~l~d~dde~ek~~~e~~~~~~~~~ssskkRK~~~~s~kk~s~~kk~~d~~~~d~~ 898 (1009)
....+.+++++|.+.+.....
T Consensus 109 ~~~~~g~~~il~~tPe~l~~~~~--------------------------------------------------------- 131 (607)
T PRK11057 109 AGCRTGQIKLLYIAPERLMMDNF--------------------------------------------------------- 131 (607)
T ss_pred HHHhCCCCcEEEEChHHhcChHH---------------------------------------------------------
Confidence 112357788888776642100
Q ss_pred cCcccccceeEEEEcccccccchh---hHHHHHHH----hcccCeEEEEeccCCCCCHHHHHHHHHhhC
Q 001825 899 AGPLAKVGWFRVVLDEAQSIKNHR---TQVARACW----GLRAKRRWCLSGTPIQNAIDDLYSYFRFLR 960 (1009)
Q Consensus 899 ~s~L~~i~W~RVILDEAH~IKN~~---Sq~skAl~----~L~Ak~RW~LTGTPIQNsL~DLySLLrFLr 960 (1009)
...|....+.+||+||||.+-... -..++.+. .+.....++||||+......++...+.+-.
T Consensus 132 ~~~l~~~~l~~iVIDEaH~i~~~G~~fr~~y~~L~~l~~~~p~~~~v~lTAT~~~~~~~di~~~l~l~~ 200 (607)
T PRK11057 132 LEHLAHWNPALLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTTRQDIVRLLGLND 200 (607)
T ss_pred HHHHhhCCCCEEEEeCccccccccCcccHHHHHHHHHHHhCCCCcEEEEecCCChhHHHHHHHHhCCCC
Confidence 001233356789999999886432 11122232 233456799999999887777777665433
No 50
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=98.41 E-value=3.2e-06 Score=102.82 Aligned_cols=171 Identities=18% Similarity=0.193 Sum_probs=117.4
Q ss_pred cCCCchhHHHHHHHHHhccccCCCCcccEEEcCCCchHHHHHHHHHHHcCCCCCCCcchhhhhhhhcccccccccccccc
Q 001825 664 AVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGIQVNG 743 (1009)
Q Consensus 664 kv~LrPHQkegV~WMlqrE~s~~~~rGGILADEMGLGKTVqaIALIl~~r~~~~~~~~~~k~~~e~l~~de~~d~~~~~~ 743 (1009)
.++||+||.+-+.-.+- ...|+|=.+|+|||..|.-++..+.
T Consensus 60 ~~~lR~YQ~eivq~ALg--------kNtii~lPTG~GKTfIAa~Vm~nh~------------------------------ 101 (746)
T KOG0354|consen 60 NLELRNYQEELVQPALG--------KNTIIALPTGSGKTFIAAVIMKNHF------------------------------ 101 (746)
T ss_pred cccccHHHHHHhHHhhc--------CCeEEEeecCCCccchHHHHHHHHH------------------------------
Confidence 47799999998876662 5689999999999999866554321
Q ss_pred ccccccccccccccCCCCCCccchhhhhhcCCCCCcEEEEeChh-hHHHHHHHHHHHhcCCCCcEEEEEcCCC--CCCCc
Q 001825 744 LDLVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTS-VLRQWAEELRNKVTSKGSLSVLVYHGSS--RTKDP 820 (1009)
Q Consensus 744 ~~~~k~~~~~C~~~s~~~s~~s~~~~~q~~~rpa~~TLIVcP~S-LL~QW~~EI~K~~~~~~~LkVlVy~Gs~--R~k~~ 820 (1009)
+.++.+.+++.+|.. |+.|=..++..... + -.+.+..|.. +....
T Consensus 102 -----------------------------rw~p~~KiVF~aP~~pLv~QQ~a~~~~~~~--~-~~~T~~l~~~~~~~~r~ 149 (746)
T KOG0354|consen 102 -----------------------------EWRPKGKVVFLAPTRPLVNQQIACFSIYLI--P-YSVTGQLGDTVPRSNRG 149 (746)
T ss_pred -----------------------------hcCCcceEEEeeCCchHHHHHHHHHhhccC--c-ccceeeccCccCCCchh
Confidence 234456899999985 67776688876654 1 4566666553 33344
Q ss_pred ccccCCCEEEEehhhhhcccCCCCCCCchhHHHHhhhcCCCCCCcccccccccCCCCCCcccccccCCCCCCcchhhccC
Q 001825 821 CELAKFDVVITTYSIVSMEVPKQPLGDKEDEEEKMKIEGEDLPPMYCSSSKKRKCPPSSDRKGSKQKKGPDGLLLDIVAG 900 (1009)
Q Consensus 821 ~~LakyDVVITTYstLs~ev~k~~l~d~dde~ek~~~e~~~~~~~~~ssskkRK~~~~s~kk~s~~kk~~d~~~~d~~~s 900 (1009)
..++..+|++.|-.++.+.+....
T Consensus 150 ~i~~s~~vff~TpQil~ndL~~~~-------------------------------------------------------- 173 (746)
T KOG0354|consen 150 EIVASKRVFFRTPQILENDLKSGL-------------------------------------------------------- 173 (746)
T ss_pred hhhcccceEEeChHhhhhhccccc--------------------------------------------------------
Confidence 556788999999999876542200
Q ss_pred ccc-ccceeEEEEccccccc-ch-hhHHHHHHHhcc--cCeEEEEeccCCCCCHHHHHHHHHhhCCC
Q 001825 901 PLA-KVGWFRVVLDEAQSIK-NH-RTQVARACWGLR--AKRRWCLSGTPIQNAIDDLYSYFRFLRYD 962 (1009)
Q Consensus 901 ~L~-~i~W~RVILDEAH~IK-N~-~Sq~skAl~~L~--Ak~RW~LTGTPIQNsL~DLySLLrFLrp~ 962 (1009)
.. --.|-.+|+||||+-. |+ -+.+.+....++ ..+.++|||||= ++.+....++.=|...
T Consensus 174 -~~~ls~fs~iv~DE~Hra~kn~~Y~~Vmr~~l~~k~~~~qILgLTASpG-~~~~~v~~~I~~L~as 238 (746)
T KOG0354|consen 174 -HDELSDFSLIVFDECHRTSKNHPYNNIMREYLDLKNQGNQILGLTASPG-SKLEQVQNVIDNLCAS 238 (746)
T ss_pred -ccccceEEEEEEcccccccccccHHHHHHHHHHhhhccccEEEEecCCC-ccHHHHHHHHHhhhee
Confidence 01 1247789999999864 42 355555555553 337799999999 7777777666655554
No 51
>PTZ00110 helicase; Provisional
Probab=98.40 E-value=2.4e-06 Score=102.62 Aligned_cols=110 Identities=16% Similarity=0.081 Sum_probs=69.1
Q ss_pred CCchhHHHHHHHHHhccccCCCCcccEEEcCCCchHHHHHHHH-HHHcCCCCCCCcchhhhhhhhccccccccccccccc
Q 001825 666 PLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIAL-ILKERPPSFRTEDDNKRQLETLNLDEEDNGIQVNGL 744 (1009)
Q Consensus 666 ~LrPHQkegV~WMlqrE~s~~~~rGGILADEMGLGKTVqaIAL-Il~~r~~~~~~~~~~k~~~e~l~~de~~d~~~~~~~ 744 (1009)
.+.|+|..++-.++.. +..|+.-..|.|||+..+.- +.....
T Consensus 152 ~pt~iQ~~aip~~l~G-------~dvI~~ApTGSGKTlaylLP~l~~i~~------------------------------ 194 (545)
T PTZ00110 152 EPTPIQVQGWPIALSG-------RDMIGIAETGSGKTLAFLLPAIVHINA------------------------------ 194 (545)
T ss_pred CCCHHHHHHHHHHhcC-------CCEEEEeCCCChHHHHHHHHHHHHHHh------------------------------
Confidence 4789999999887742 56789999999999976422 221100
Q ss_pred cccccccccccccCCCCCCccchhhhhhcCCCCCcEEEEeChh-hHHHHHHHHHHHhcCCCCcEEEEEcCCCC-CCCccc
Q 001825 745 DLVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTS-VLRQWAEELRNKVTSKGSLSVLVYHGSSR-TKDPCE 822 (1009)
Q Consensus 745 ~~~k~~~~~C~~~s~~~s~~s~~~~~q~~~rpa~~TLIVcP~S-LL~QW~~EI~K~~~~~~~LkVlVy~Gs~R-~k~~~~ 822 (1009)
+ +. ........+|||||.- |+.||.+++.++... ..+++.+..|... ......
T Consensus 195 ----~-~~-------------------~~~~~gp~~LIL~PTreLa~Qi~~~~~~~~~~-~~i~~~~~~gg~~~~~q~~~ 249 (545)
T PTZ00110 195 ----Q-PL-------------------LRYGDGPIVLVLAPTRELAEQIREQCNKFGAS-SKIRNTVAYGGVPKRGQIYA 249 (545)
T ss_pred ----c-cc-------------------ccCCCCcEEEEECChHHHHHHHHHHHHHHhcc-cCccEEEEeCCCCHHHHHHH
Confidence 0 00 0000112479999985 889999999987652 3455555544432 221122
Q ss_pred -ccCCCEEEEehhhhh
Q 001825 823 -LAKFDVVITTYSIVS 837 (1009)
Q Consensus 823 -LakyDVVITTYstLs 837 (1009)
....+|||+|...|.
T Consensus 250 l~~~~~IlVaTPgrL~ 265 (545)
T PTZ00110 250 LRRGVEILIACPGRLI 265 (545)
T ss_pred HHcCCCEEEECHHHHH
Confidence 245799999998874
No 52
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=98.40 E-value=1.5e-06 Score=105.01 Aligned_cols=160 Identities=14% Similarity=0.174 Sum_probs=105.8
Q ss_pred CCchhHHHHHHHHHhccccCCCCcccEEEcCCCchHHHHHHHHHHHcCCCCCCCcchhhhhhhhcccccccccccccccc
Q 001825 666 PLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGIQVNGLD 745 (1009)
Q Consensus 666 ~LrPHQkegV~WMlqrE~s~~~~rGGILADEMGLGKTVqaIALIl~~r~~~~~~~~~~k~~~e~l~~de~~d~~~~~~~~ 745 (1009)
.++|.|.+++.-++.. +..+++-..|.|||+..+.-++..
T Consensus 13 ~fr~~Q~~~i~~il~g-------~dvlv~~PTG~GKTl~y~lpal~~--------------------------------- 52 (591)
T TIGR01389 13 DFRPGQEEIISHVLDG-------RDVLVVMPTGGGKSLCYQVPALLL--------------------------------- 52 (591)
T ss_pred CCCHHHHHHHHHHHcC-------CCEEEEcCCCccHhHHHHHHHHHc---------------------------------
Confidence 4899999999988843 457999999999999865333210
Q ss_pred ccccccccccccCCCCCCccchhhhhhcCCCCCcEEEEeCh-hhHHHHHHHHHHHhcCCCCcEEEEEcCCCCCCCc----
Q 001825 746 LVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPT-SVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDP---- 820 (1009)
Q Consensus 746 ~~k~~~~~C~~~s~~~s~~s~~~~~q~~~rpa~~TLIVcP~-SLL~QW~~EI~K~~~~~~~LkVlVy~Gs~R~k~~---- 820 (1009)
.+.+|||+|. +|+.|+.+.++.. .+.+..+++.......
T Consensus 53 -------------------------------~g~~lVisPl~sL~~dq~~~l~~~-----gi~~~~~~s~~~~~~~~~~~ 96 (591)
T TIGR01389 53 -------------------------------KGLTVVISPLISLMKDQVDQLRAA-----GVAAAYLNSTLSAKEQQDIE 96 (591)
T ss_pred -------------------------------CCcEEEEcCCHHHHHHHHHHHHHc-----CCcEEEEeCCCCHHHHHHHH
Confidence 1347999997 5889999988764 2566666665432211
Q ss_pred --ccccCCCEEEEehhhhhcccCCCCCCCchhHHHHhhhcCCCCCCcccccccccCCCCCCcccccccCCCCCCcchhhc
Q 001825 821 --CELAKFDVVITTYSIVSMEVPKQPLGDKEDEEEKMKIEGEDLPPMYCSSSKKRKCPPSSDRKGSKQKKGPDGLLLDIV 898 (1009)
Q Consensus 821 --~~LakyDVVITTYstLs~ev~k~~l~d~dde~ek~~~e~~~~~~~~~ssskkRK~~~~s~kk~s~~kk~~d~~~~d~~ 898 (1009)
.....++++++|.+.+.....
T Consensus 97 ~~l~~~~~~il~~tpe~l~~~~~--------------------------------------------------------- 119 (591)
T TIGR01389 97 KALVNGELKLLYVAPERLEQDYF--------------------------------------------------------- 119 (591)
T ss_pred HHHhCCCCCEEEEChhHhcChHH---------------------------------------------------------
Confidence 112468899988887643110
Q ss_pred cCcccccceeEEEEcccccccchh-------hHHHHHHHhcccCeEEEEeccCCCCCHHHHHHHHHh
Q 001825 899 AGPLAKVGWFRVVLDEAQSIKNHR-------TQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRF 958 (1009)
Q Consensus 899 ~s~L~~i~W~RVILDEAH~IKN~~-------Sq~skAl~~L~Ak~RW~LTGTPIQNsL~DLySLLrF 958 (1009)
...+......+||+||||.+.... .+.......+.....++||||+......++...+.+
T Consensus 120 ~~~l~~~~l~~iViDEaH~i~~~g~~frp~y~~l~~l~~~~~~~~vi~lTAT~~~~~~~~i~~~l~~ 186 (591)
T TIGR01389 120 LNMLQRIPIALVAVDEAHCVSQWGHDFRPEYQRLGSLAERFPQVPRIALTATADAETRQDIRELLRL 186 (591)
T ss_pred HHHHhcCCCCEEEEeCCcccccccCccHHHHHHHHHHHHhCCCCCEEEEEeCCCHHHHHHHHHHcCC
Confidence 001233457789999999985421 122222333444458999999998888887776654
No 53
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=98.36 E-value=3.6e-06 Score=102.66 Aligned_cols=107 Identities=18% Similarity=0.114 Sum_probs=71.4
Q ss_pred CCchhHHHHHHHHHhccccCCCCcccEEEcCCCchHHHHHHHHHHHcCCCCCCCcchhhhhhhhcccccccccccccccc
Q 001825 666 PLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGIQVNGLD 745 (1009)
Q Consensus 666 ~LrPHQkegV~WMlqrE~s~~~~rGGILADEMGLGKTVqaIALIl~~r~~~~~~~~~~k~~~e~l~~de~~d~~~~~~~~ 745 (1009)
.+.|+|..++..+++. +..|+.-..|.|||+..+..++..-.
T Consensus 28 ~ptpiQ~~ai~~ll~g-------~dvl~~ApTGsGKT~af~lpll~~l~------------------------------- 69 (629)
T PRK11634 28 KPSPIQAECIPHLLNG-------RDVLGMAQTGSGKTAAFSLPLLHNLD------------------------------- 69 (629)
T ss_pred CCCHHHHHHHHHHHcC-------CCEEEEcCCCCcHHHHHHHHHHHHhh-------------------------------
Confidence 4789999999998843 44677778999999875433322100
Q ss_pred ccccccccccccCCCCCCccchhhhhhcCCCCCcEEEEeChh-hHHHHHHHHHHHhcCCCCcEEEEEcCCCCCCC-ccc-
Q 001825 746 LVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTS-VLRQWAEELRNKVTSKGSLSVLVYHGSSRTKD-PCE- 822 (1009)
Q Consensus 746 ~~k~~~~~C~~~s~~~s~~s~~~~~q~~~rpa~~TLIVcP~S-LL~QW~~EI~K~~~~~~~LkVlVy~Gs~R~k~-~~~- 822 (1009)
.......+|||||.- |+.||.+++.++......++++.++|...... ...
T Consensus 70 ---------------------------~~~~~~~~LIL~PTreLa~Qv~~~l~~~~~~~~~i~v~~~~gG~~~~~q~~~l 122 (629)
T PRK11634 70 ---------------------------PELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRAL 122 (629)
T ss_pred ---------------------------hccCCCeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEECCcCHHHHHHHh
Confidence 000112479999985 78999999988765444577777776643221 111
Q ss_pred ccCCCEEEEehhhhh
Q 001825 823 LAKFDVVITTYSIVS 837 (1009)
Q Consensus 823 LakyDVVITTYstLs 837 (1009)
....+|||+|...+.
T Consensus 123 ~~~~~IVVgTPgrl~ 137 (629)
T PRK11634 123 RQGPQIVVGTPGRLL 137 (629)
T ss_pred cCCCCEEEECHHHHH
Confidence 235789999998874
No 54
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=98.34 E-value=3e-06 Score=101.77 Aligned_cols=160 Identities=21% Similarity=0.269 Sum_probs=111.7
Q ss_pred ccCCCchhHHHHHHHHHhccccCCCCcccEEEcCCCchHHHHHHHHHHHcCCCCCCCcchhhhhhhhccccccccccccc
Q 001825 663 LAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGIQVN 742 (1009)
Q Consensus 663 Lkv~LrPHQkegV~WMlqrE~s~~~~rGGILADEMGLGKTVqaIALIl~~r~~~~~~~~~~k~~~e~l~~de~~d~~~~~ 742 (1009)
|.++|-..|++++.=+..-..++.. -.-+|=-|+|.|||+.++..++..-.
T Consensus 259 LPF~LT~aQ~~vi~EI~~Dl~~~~~-M~RLlQGDVGSGKTvVA~laml~ai~---------------------------- 309 (677)
T COG1200 259 LPFKLTNAQKRVIKEILADLASPVP-MNRLLQGDVGSGKTVVALLAMLAAIE---------------------------- 309 (677)
T ss_pred CCCCccHHHHHHHHHHHhhhcCchh-hHHHhccCcCCCHHHHHHHHHHHHHH----------------------------
Confidence 4577889999999877765544432 23466669999999998766654210
Q ss_pred cccccccccccccccCCCCCCccchhhhhhcCCCCCcEEEEeChhhH-HHHHHHHHHHhcCCCCcEEEEEcCCCCCCCcc
Q 001825 743 GLDLVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTSVL-RQWAEELRNKVTSKGSLSVLVYHGSSRTKDPC 821 (1009)
Q Consensus 743 ~~~~~k~~~~~C~~~s~~~s~~s~~~~~q~~~rpa~~TLIVcP~SLL-~QW~~EI~K~~~~~~~LkVlVy~Gs~R~k~~~ 821 (1009)
. ..-+.+.+|+.+| .|-.+.+.+|++.- .++|..+.|.-+.+...
T Consensus 310 ------------------------------~---G~Q~ALMAPTEILA~QH~~~~~~~l~~~-~i~V~lLtG~~kgk~r~ 355 (677)
T COG1200 310 ------------------------------A---GYQAALMAPTEILAEQHYESLRKWLEPL-GIRVALLTGSLKGKARK 355 (677)
T ss_pred ------------------------------c---CCeeEEeccHHHHHHHHHHHHHHHhhhc-CCeEEEeecccchhHHH
Confidence 0 0125788999865 99999999999843 48999999986554322
Q ss_pred c------ccCCCEEEEehhhhhcccCCCCCCCchhHHHHhhhcCCCCCCcccccccccCCCCCCcccccccCCCCCCcch
Q 001825 822 E------LAKFDVVITTYSIVSMEVPKQPLGDKEDEEEKMKIEGEDLPPMYCSSSKKRKCPPSSDRKGSKQKKGPDGLLL 895 (1009)
Q Consensus 822 ~------LakyDVVITTYstLs~ev~k~~l~d~dde~ek~~~e~~~~~~~~~ssskkRK~~~~s~kk~s~~kk~~d~~~~ 895 (1009)
. -...|+||-|+..+.-.+
T Consensus 356 ~~l~~l~~G~~~ivVGTHALiQd~V------------------------------------------------------- 380 (677)
T COG1200 356 EILEQLASGEIDIVVGTHALIQDKV------------------------------------------------------- 380 (677)
T ss_pred HHHHHHhCCCCCEEEEcchhhhcce-------------------------------------------------------
Confidence 2 246899999998874221
Q ss_pred hhccCcccccceeEEEEcccccccchhhHHHHHHHhc-c-cCeEEEEeccCCCCCHH
Q 001825 896 DIVAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGL-R-AKRRWCLSGTPIQNAID 950 (1009)
Q Consensus 896 d~~~s~L~~i~W~RVILDEAH~IKN~~Sq~skAl~~L-~-Ak~RW~LTGTPIQNsL~ 950 (1009)
.-....+||+||=|++.- ....+++.- . ..+.++||||||+.++.
T Consensus 381 -------~F~~LgLVIiDEQHRFGV---~QR~~L~~KG~~~Ph~LvMTATPIPRTLA 427 (677)
T COG1200 381 -------EFHNLGLVIIDEQHRFGV---HQRLALREKGEQNPHVLVMTATPIPRTLA 427 (677)
T ss_pred -------eecceeEEEEeccccccH---HHHHHHHHhCCCCCcEEEEeCCCchHHHH
Confidence 111246899999999853 333444443 3 57999999999999986
No 55
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=98.29 E-value=5.5e-06 Score=100.08 Aligned_cols=114 Identities=15% Similarity=0.121 Sum_probs=74.5
Q ss_pred CCchhHHHHHHHHHhccccCCCCcccEEEcCCCchHHHHHHHHHHHcCCCCCCCcchhhhhhhhcccccccccccccccc
Q 001825 666 PLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGIQVNGLD 745 (1009)
Q Consensus 666 ~LrPHQkegV~WMlqrE~s~~~~rGGILADEMGLGKTVqaIALIl~~r~~~~~~~~~~k~~~e~l~~de~~d~~~~~~~~ 745 (1009)
.+.|+|..++-.+++. +..|+.-..|.|||+..+..++....
T Consensus 31 ~ptpiQ~~~ip~~l~G-------~Dvi~~ApTGSGKTlafllpil~~l~------------------------------- 72 (572)
T PRK04537 31 RCTPIQALTLPVALPG-------GDVAGQAQTGTGKTLAFLVAVMNRLL------------------------------- 72 (572)
T ss_pred CCCHHHHHHHHHHhCC-------CCEEEEcCCCCcHHHHHHHHHHHHHH-------------------------------
Confidence 4789999999998842 55788889999999987665543210
Q ss_pred ccccccccccccCCCCCCccchhhhhhcCCCCCcEEEEeChh-hHHHHHHHHHHHhcCCCCcEEEEEcCCCCCCCc-ccc
Q 001825 746 LVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTS-VLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDP-CEL 823 (1009)
Q Consensus 746 ~~k~~~~~C~~~s~~~s~~s~~~~~q~~~rpa~~TLIVcP~S-LL~QW~~EI~K~~~~~~~LkVlVy~Gs~R~k~~-~~L 823 (1009)
+. +... ........+|||||.- |+.|+.+++.++.. ...+++..++|....... ..+
T Consensus 73 --~~-~~~~-----------------~~~~~~~raLIl~PTreLa~Qi~~~~~~l~~-~~~i~v~~l~Gg~~~~~q~~~l 131 (572)
T PRK04537 73 --SR-PALA-----------------DRKPEDPRALILAPTRELAIQIHKDAVKFGA-DLGLRFALVYGGVDYDKQRELL 131 (572)
T ss_pred --hc-cccc-----------------ccccCCceEEEEeCcHHHHHHHHHHHHHHhc-cCCceEEEEECCCCHHHHHHHH
Confidence 00 0000 0000113589999985 88999999988765 335778777776533221 112
Q ss_pred -cCCCEEEEehhhhhc
Q 001825 824 -AKFDVVITTYSIVSM 838 (1009)
Q Consensus 824 -akyDVVITTYstLs~ 838 (1009)
...||||+|...|..
T Consensus 132 ~~~~dIiV~TP~rL~~ 147 (572)
T PRK04537 132 QQGVDVIIATPGRLID 147 (572)
T ss_pred hCCCCEEEECHHHHHH
Confidence 357999999888743
No 56
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=98.27 E-value=8.2e-06 Score=96.07 Aligned_cols=113 Identities=16% Similarity=0.179 Sum_probs=72.0
Q ss_pred CCchhHHHHHHHHHhccccCCCCcccEEEcCCCchHHHHHHHHHHHcCCCCCCCcchhhhhhhhcccccccccccccccc
Q 001825 666 PLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGIQVNGLD 745 (1009)
Q Consensus 666 ~LrPHQkegV~WMlqrE~s~~~~rGGILADEMGLGKTVqaIALIl~~r~~~~~~~~~~k~~~e~l~~de~~d~~~~~~~~ 745 (1009)
.+++||.+++..+++- +..|++-..|.|||+..+--++....
T Consensus 109 ~~~~iQ~~ai~~~~~G-------~dvi~~apTGSGKTlay~lpil~~l~------------------------------- 150 (475)
T PRK01297 109 YCTPIQAQVLGYTLAG-------HDAIGRAQTGTGKTAAFLISIINQLL------------------------------- 150 (475)
T ss_pred CCCHHHHHHHHHHhCC-------CCEEEECCCCChHHHHHHHHHHHHHH-------------------------------
Confidence 4799999999987742 45788889999999876544432100
Q ss_pred ccccccccccccCCCCCCccchhhhhhcCCCCCcEEEEeChh-hHHHHHHHHHHHhcCCCCcEEEEEcCCCCCC-Cccc-
Q 001825 746 LVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTS-VLRQWAEELRNKVTSKGSLSVLVYHGSSRTK-DPCE- 822 (1009)
Q Consensus 746 ~~k~~~~~C~~~s~~~s~~s~~~~~q~~~rpa~~TLIVcP~S-LL~QW~~EI~K~~~~~~~LkVlVy~Gs~R~k-~~~~- 822 (1009)
+.... .........+|||+|.- |..||.+++..+.. ...+++..++|..... ....
T Consensus 151 --~~~~~------------------~~~~~~~~~aLil~PtreLa~Q~~~~~~~l~~-~~~~~v~~~~gg~~~~~~~~~~ 209 (475)
T PRK01297 151 --QTPPP------------------KERYMGEPRALIIAPTRELVVQIAKDAAALTK-YTGLNVMTFVGGMDFDKQLKQL 209 (475)
T ss_pred --hcCcc------------------cccccCCceEEEEeCcHHHHHHHHHHHHHhhc-cCCCEEEEEEccCChHHHHHHH
Confidence 00000 00000123589999985 88999999987754 2347787777764322 1122
Q ss_pred -ccCCCEEEEehhhhh
Q 001825 823 -LAKFDVVITTYSIVS 837 (1009)
Q Consensus 823 -LakyDVVITTYstLs 837 (1009)
....+|||+|.+.|.
T Consensus 210 ~~~~~~Iiv~TP~~Ll 225 (475)
T PRK01297 210 EARFCDILVATPGRLL 225 (475)
T ss_pred hCCCCCEEEECHHHHH
Confidence 235799999998874
No 57
>COG1204 Superfamily II helicase [General function prediction only]
Probab=98.26 E-value=6.1e-06 Score=102.38 Aligned_cols=102 Identities=21% Similarity=0.247 Sum_probs=78.7
Q ss_pred CCchhHHHHHHHHHhccccCCCCcccEEEcCCCchHHHHHHHHHHHcCCCCCCCcchhhhhhhhcccccccccccccccc
Q 001825 666 PLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGIQVNGLD 745 (1009)
Q Consensus 666 ~LrPHQkegV~WMlqrE~s~~~~rGGILADEMGLGKTVqaIALIl~~r~~~~~~~~~~k~~~e~l~~de~~d~~~~~~~~ 745 (1009)
.|+|+|+.+|.-.+.. ....|+|=..|.|||+.++..|+..-.
T Consensus 31 el~~~qq~av~~~~~~------~~N~li~aPTgsGKTlIA~lai~~~l~------------------------------- 73 (766)
T COG1204 31 ELFNPQQEAVEKGLLS------DENVLISAPTGSGKTLIALLAILSTLL------------------------------- 73 (766)
T ss_pred HhhHHHHHHhhccccC------CCcEEEEcCCCCchHHHHHHHHHHHHH-------------------------------
Confidence 6899999999766543 156899999999999999877754210
Q ss_pred ccccccccccccCCCCCCccchhhhhhcCCCCCcEEEEeCh-hhHHHHHHHHHHHhcCCCCcEEEEEcCCCCCCCccccc
Q 001825 746 LVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPT-SVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCELA 824 (1009)
Q Consensus 746 ~~k~~~~~C~~~s~~~s~~s~~~~~q~~~rpa~~TLIVcP~-SLL~QW~~EI~K~~~~~~~LkVlVy~Gs~R~k~~~~La 824 (1009)
+ ..++.+-|||. +|..+=.+|+.+|- .-.++|.+++|+..... ..+.
T Consensus 74 ---------------------------~--~~~k~vYivPlkALa~Ek~~~~~~~~--~~GirV~~~TgD~~~~~-~~l~ 121 (766)
T COG1204 74 ---------------------------E--GGGKVVYIVPLKALAEEKYEEFSRLE--ELGIRVGISTGDYDLDD-ERLA 121 (766)
T ss_pred ---------------------------h--cCCcEEEEeChHHHHHHHHHHhhhHH--hcCCEEEEecCCcccch-hhhc
Confidence 0 02468999997 68888899998432 23599999999876543 7789
Q ss_pred CCCEEEEehhhh
Q 001825 825 KFDVVITTYSIV 836 (1009)
Q Consensus 825 kyDVVITTYstL 836 (1009)
++|||||||+.+
T Consensus 122 ~~~ViVtT~EK~ 133 (766)
T COG1204 122 RYDVIVTTPEKL 133 (766)
T ss_pred cCCEEEEchHHh
Confidence 999999999877
No 58
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=98.24 E-value=5.4e-06 Score=96.06 Aligned_cols=114 Identities=15% Similarity=0.092 Sum_probs=72.6
Q ss_pred CCchhHHHHHHHHHhccccCCCCcccEEEcCCCchHHHHHHHHHHHcCCCCCCCcchhhhhhhhcccccccccccccccc
Q 001825 666 PLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGIQVNGLD 745 (1009)
Q Consensus 666 ~LrPHQkegV~WMlqrE~s~~~~rGGILADEMGLGKTVqaIALIl~~r~~~~~~~~~~k~~~e~l~~de~~d~~~~~~~~ 745 (1009)
.+.|.|..++--+++. +..|+.-..|.|||+..+..++....
T Consensus 30 ~pt~iQ~~aip~il~g-------~dvi~~ApTGsGKTla~llp~l~~l~------------------------------- 71 (423)
T PRK04837 30 NCTPIQALALPLTLAG-------RDVAGQAQTGTGKTMAFLTATFHYLL------------------------------- 71 (423)
T ss_pred CCCHHHHHHHHHHhCC-------CcEEEECCCCchHHHHHHHHHHHHHH-------------------------------
Confidence 3679999999888742 45788889999999987654432110
Q ss_pred ccccccccccccCCCCCCccchhhhhhcCCCCCcEEEEeChh-hHHHHHHHHHHHhcCCCCcEEEEEcCCCCCCC-cccc
Q 001825 746 LVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTS-VLRQWAEELRNKVTSKGSLSVLVYHGSSRTKD-PCEL 823 (1009)
Q Consensus 746 ~~k~~~~~C~~~s~~~s~~s~~~~~q~~~rpa~~TLIVcP~S-LL~QW~~EI~K~~~~~~~LkVlVy~Gs~R~k~-~~~L 823 (1009)
+. +... ........+|||||.- |+.||.+++.++.. ...+++.++.|...... ...+
T Consensus 72 --~~-~~~~-----------------~~~~~~~~~lil~PtreLa~Qi~~~~~~l~~-~~~~~v~~~~gg~~~~~~~~~l 130 (423)
T PRK04837 72 --SH-PAPE-----------------DRKVNQPRALIMAPTRELAVQIHADAEPLAQ-ATGLKLGLAYGGDGYDKQLKVL 130 (423)
T ss_pred --hc-cccc-----------------ccccCCceEEEECCcHHHHHHHHHHHHHHhc-cCCceEEEEECCCCHHHHHHHh
Confidence 00 0000 0001123589999985 88999999887754 23477877777643221 1122
Q ss_pred -cCCCEEEEehhhhhc
Q 001825 824 -AKFDVVITTYSIVSM 838 (1009)
Q Consensus 824 -akyDVVITTYstLs~ 838 (1009)
...||||+|.+.+..
T Consensus 131 ~~~~~IlV~TP~~l~~ 146 (423)
T PRK04837 131 ESGVDILIGTTGRLID 146 (423)
T ss_pred cCCCCEEEECHHHHHH
Confidence 357999999988743
No 59
>COG4889 Predicted helicase [General function prediction only]
Probab=98.21 E-value=2.6e-06 Score=103.07 Aligned_cols=43 Identities=21% Similarity=0.196 Sum_probs=32.2
Q ss_pred cCCCchhHHHHHHHHHhccccCCCCcccEEEcCCCchHHHHHHHHH
Q 001825 664 AVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 709 (1009)
Q Consensus 664 kv~LrPHQkegV~WMlqrE~s~~~~rGGILADEMGLGKTVqaIALI 709 (1009)
+.+|||||..|+.-.++-.... -|| =|--.+|.|||.++|-+.
T Consensus 159 ~kk~R~hQq~Aid~a~~~F~~n--~RG-kLIMAcGTGKTfTsLkis 201 (1518)
T COG4889 159 PKKPRPHQQTAIDAAKEGFSDN--DRG-KLIMACGTGKTFTSLKIS 201 (1518)
T ss_pred CCCCChhHHHHHHHHHhhcccc--cCC-cEEEecCCCccchHHHHH
Confidence 4579999999999888665442 244 444568999999998766
No 60
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=98.21 E-value=9.8e-06 Score=90.22 Aligned_cols=225 Identities=23% Similarity=0.275 Sum_probs=127.8
Q ss_pred CCCCCcc-cCCCchhHHHHHHHHHhccccCC---CCcccEEEcCCCchHHHHHHHHHHHcCCCCCCCcchhhhhhhhccc
Q 001825 657 SAPDGVL-AVPLLRHQRIALSWMVQKETSSL---HCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNL 732 (1009)
Q Consensus 657 ~~P~glL-kv~LrPHQkegV~WMlqrE~s~~---~~rGGILADEMGLGKTVqaIALIl~~r~~~~~~~~~~k~~~e~l~~ 732 (1009)
.+|..++ ...|=.-|+++|.+..++....+ .-.|-+|+|.+|.||-.+.-++|+..+.
T Consensus 27 ~lp~~~~~~g~LS~~QLEaV~yA~q~h~~~Lp~~~R~Gf~lGDGtGvGKGR~iAgiI~~n~l------------------ 88 (303)
T PF13872_consen 27 HLPEEVIDSGLLSALQLEAVIYACQRHEQILPGGSRAGFFLGDGTGVGKGRQIAGIILENWL------------------ 88 (303)
T ss_pred CCCHHHHhcccccHHHHHHHHHHHHHHHhhcccccCcEEEeccCCCcCccchhHHHHHHHHH------------------
Confidence 4555322 23467899999999988765422 2368899999999999999988865320
Q ss_pred cccccccccccccccccccccccccCCCCCCccchhhhhhcCCCCCcEEEEe-ChhhHHHHHHHHHHHhcCCCCcEEEEE
Q 001825 733 DEEDNGIQVNGLDLVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVC-PTSVLRQWAEELRNKVTSKGSLSVLVY 811 (1009)
Q Consensus 733 de~~d~~~~~~~~~~k~~~~~C~~~s~~~s~~s~~~~~q~~~rpa~~TLIVc-P~SLL~QW~~EI~K~~~~~~~LkVlVy 811 (1009)
+++ ++.|.|. .+.|..-=++.++..-. ..+.+..+
T Consensus 89 ----------------------------------------~Gr--~r~vwvS~s~dL~~Da~RDl~DIG~--~~i~v~~l 124 (303)
T PF13872_consen 89 ----------------------------------------RGR--KRAVWVSVSNDLKYDAERDLRDIGA--DNIPVHPL 124 (303)
T ss_pred ----------------------------------------cCC--CceEEEECChhhhhHHHHHHHHhCC--Ccccceec
Confidence 111 1234444 44566555566654311 23333333
Q ss_pred cCCCCCCCcccccCCCEEEEehhhhhcccCCCCCCCchhHHHHhhhcCCCCCCcccccccccCCCCCCcccccccCCCCC
Q 001825 812 HGSSRTKDPCELAKFDVVITTYSIVSMEVPKQPLGDKEDEEEKMKIEGEDLPPMYCSSSKKRKCPPSSDRKGSKQKKGPD 891 (1009)
Q Consensus 812 ~Gs~R~k~~~~LakyDVVITTYstLs~ev~k~~l~d~dde~ek~~~e~~~~~~~~~ssskkRK~~~~s~kk~s~~kk~~d 891 (1009)
..-+.. +. .-.+..||.+||++|..+..+ .+++
T Consensus 125 ~~~~~~-~~-~~~~~GvlF~TYs~L~~~~~~---------------------------~~~~------------------ 157 (303)
T PF13872_consen 125 NKFKYG-DI-IRLKEGVLFSTYSTLISESQS---------------------------GGKY------------------ 157 (303)
T ss_pred hhhccC-cC-CCCCCCccchhHHHHHhHHhc---------------------------cCCc------------------
Confidence 222111 11 113668999999999754211 0000
Q ss_pred CcchhhccCcccc-cce------eEEEEcccccccchhh------HHHHHHHhcc----cCeEEEEeccCCCCCHHHHHH
Q 001825 892 GLLLDIVAGPLAK-VGW------FRVVLDEAQSIKNHRT------QVARACWGLR----AKRRWCLSGTPIQNAIDDLYS 954 (1009)
Q Consensus 892 ~~~~d~~~s~L~~-i~W------~RVILDEAH~IKN~~S------q~skAl~~L~----Ak~RW~LTGTPIQNsL~DLyS 954 (1009)
.+.|.+ +.| .+||+||+|..||-.+ ++..++..|+ .-+.+.+|||.... +..|-
T Consensus 158 -------~sRl~ql~~W~g~dfdgvivfDEcH~akn~~~~~~~~sk~g~avl~LQ~~LP~ARvvY~SATgase-p~Nma- 228 (303)
T PF13872_consen 158 -------RSRLDQLVDWCGEDFDGVIVFDECHKAKNLSSGSKKPSKTGIAVLELQNRLPNARVVYASATGASE-PRNMA- 228 (303)
T ss_pred -------cchHHHHHHHHhcCCCceEEeccchhcCCCCccCccccHHHHHHHHHHHhCCCCcEEEecccccCC-Cceee-
Confidence 000111 122 3799999999999644 6667776663 33578899999843 23332
Q ss_pred HHHhhC----CCCCCChHHHHhhhcccccCCchhhHHHHHHHH--hhcccccccc
Q 001825 955 YFRFLR----YDPFAVYKSFCSMIKVPISKNPVKGYKKLQAVL--KTIMLRRTKG 1003 (1009)
Q Consensus 955 LLrFLr----p~pf~~~~~F~~~f~~PIe~~~~~g~~rL~~vL--k~~MLRRTK~ 1003 (1009)
++.-|. .-+|.++..|...+. ++....++-+..-| ...++||...
T Consensus 229 Ym~RLGLWG~gtpf~~~~~f~~a~~----~gGv~amE~vA~dlKa~G~yiaR~LS 279 (303)
T PF13872_consen 229 YMSRLGLWGPGTPFPDFDDFLEAME----KGGVGAMEMVAMDLKARGMYIARQLS 279 (303)
T ss_pred eeeeccccCCCCCCCCHHHHHHHHH----hcCchHHHHHHHHHHhcchheeeecc
Confidence 222121 134667777766664 35555555554434 3477887653
No 61
>PRK05580 primosome assembly protein PriA; Validated
Probab=98.21 E-value=1.2e-05 Score=99.02 Aligned_cols=104 Identities=22% Similarity=0.190 Sum_probs=74.0
Q ss_pred cCCCchhHHHHHHHHHhccccCCCCcccEEEcCCCchHHHHHHHHHHHcCCCCCCCcchhhhhhhhcccccccccccccc
Q 001825 664 AVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGIQVNG 743 (1009)
Q Consensus 664 kv~LrPHQkegV~WMlqrE~s~~~~rGGILADEMGLGKTVqaIALIl~~r~~~~~~~~~~k~~~e~l~~de~~d~~~~~~ 743 (1009)
...|.++|.+++..+.... ..+..+|.-..|.|||...+.++....
T Consensus 142 ~~~Lt~~Q~~ai~~i~~~~----~~~~~Ll~~~TGSGKT~v~l~~i~~~l------------------------------ 187 (679)
T PRK05580 142 PPTLNPEQAAAVEAIRAAA----GFSPFLLDGVTGSGKTEVYLQAIAEVL------------------------------ 187 (679)
T ss_pred CCCCCHHHHHHHHHHHhcc----CCCcEEEECCCCChHHHHHHHHHHHHH------------------------------
Confidence 4569999999999988642 113468888999999998877663310
Q ss_pred ccccccccccccccCCCCCCccchhhhhhcCCCCCcEEEEeChh-hHHHHHHHHHHHhcCCCCcEEEEEcCCCCCCCc--
Q 001825 744 LDLVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTS-VLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDP-- 820 (1009)
Q Consensus 744 ~~~~k~~~~~C~~~s~~~s~~s~~~~~q~~~rpa~~TLIVcP~S-LL~QW~~EI~K~~~~~~~LkVlVy~Gs~R~k~~-- 820 (1009)
.. .+.+||+||.. |+.||.+.++++++ .++.++||.......
T Consensus 188 ----------------------------~~---g~~vLvLvPt~~L~~Q~~~~l~~~fg----~~v~~~~s~~s~~~r~~ 232 (679)
T PRK05580 188 ----------------------------AQ---GKQALVLVPEIALTPQMLARFRARFG----APVAVLHSGLSDGERLD 232 (679)
T ss_pred ----------------------------Hc---CCeEEEEeCcHHHHHHHHHHHHHHhC----CCEEEEECCCCHHHHHH
Confidence 00 13589999985 88999999998875 578888887533211
Q ss_pred ----ccccCCCEEEEehhhh
Q 001825 821 ----CELAKFDVVITTYSIV 836 (1009)
Q Consensus 821 ----~~LakyDVVITTYstL 836 (1009)
......+|||.|.+.+
T Consensus 233 ~~~~~~~g~~~IVVgTrsal 252 (679)
T PRK05580 233 EWRKAKRGEAKVVIGARSAL 252 (679)
T ss_pred HHHHHHcCCCCEEEeccHHh
Confidence 1124578999998655
No 62
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=98.15 E-value=7.2e-06 Score=102.94 Aligned_cols=106 Identities=24% Similarity=0.303 Sum_probs=77.7
Q ss_pred CchhHHHHHHHHHhccccCCCCcccEEEcCCCchHHHHHHHHHHHcCCCCCCCcchhhhhhhhccccccccccccccccc
Q 001825 667 LLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGIQVNGLDL 746 (1009)
Q Consensus 667 LrPHQkegV~WMlqrE~s~~~~rGGILADEMGLGKTVqaIALIl~~r~~~~~~~~~~k~~~e~l~~de~~d~~~~~~~~~ 746 (1009)
||+||.+|+..+.+- +.-|+.--+|.|||..-+.-|+...
T Consensus 71 lY~HQ~~A~~~~~~G-------~~vvVtTgTgSGKTe~FllPIld~~--------------------------------- 110 (851)
T COG1205 71 LYSHQVDALRLIREG-------RNVVVTTGTGSGKTESFLLPILDHL--------------------------------- 110 (851)
T ss_pred ccHHHHHHHHHHHCC-------CCEEEECCCCCchhHHHHHHHHHHH---------------------------------
Confidence 999999999998853 5679999999999998776665421
Q ss_pred cccccccccccCCCCCCccchhhhhhcCCCCCcEEEEeChh-hHHHHHHHHHHHhcCCC-CcEEEEEcCCCCCCCcc--c
Q 001825 747 VKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTS-VLRQWAEELRNKVTSKG-SLSVLVYHGSSRTKDPC--E 822 (1009)
Q Consensus 747 ~k~~~~~C~~~s~~~s~~s~~~~~q~~~rpa~~TLIVcP~S-LL~QW~~EI~K~~~~~~-~LkVlVy~Gs~R~k~~~--~ 822 (1009)
...+.+..|+|=|.. |..-=++.++++....+ .+.+.+|+|........ .
T Consensus 111 --------------------------l~~~~a~AL~lYPtnALa~DQ~~rl~~~~~~~~~~v~~~~y~Gdt~~~~r~~~~ 164 (851)
T COG1205 111 --------------------------LRDPSARALLLYPTNALANDQAERLRELISDLPGKVTFGRYTGDTPPEERRAII 164 (851)
T ss_pred --------------------------hhCcCccEEEEechhhhHhhHHHHHHHHHHhCCCcceeeeecCCCChHHHHHHH
Confidence 011223679999986 55555677777765433 68899999987544332 2
Q ss_pred ccCCCEEEEehhhhhc
Q 001825 823 LAKFDVVITTYSIVSM 838 (1009)
Q Consensus 823 LakyDVVITTYstLs~ 838 (1009)
-...+||||+|+++..
T Consensus 165 ~~pp~IllTNpdMLh~ 180 (851)
T COG1205 165 RNPPDILLTNPDMLHY 180 (851)
T ss_pred hCCCCEEEeCHHHHHH
Confidence 4578999999999854
No 63
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=98.13 E-value=2.4e-05 Score=89.26 Aligned_cols=99 Identities=17% Similarity=0.251 Sum_probs=66.8
Q ss_pred hHHHHHHHHHhccccCCCCcccEEEcCCCchHHHHHHHHHHHcCCCCCCCcchhhhhhhhcccccccccccccccccccc
Q 001825 670 HQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGIQVNGLDLVKQ 749 (1009)
Q Consensus 670 HQkegV~WMlqrE~s~~~~rGGILADEMGLGKTVqaIALIl~~r~~~~~~~~~~k~~~e~l~~de~~d~~~~~~~~~~k~ 749 (1009)
||.+++.-|.+... ...+++-..|.|||..++..++..
T Consensus 1 hQ~~~~~~~~~~~~-----~~~~i~apTGsGKT~~~~~~~l~~------------------------------------- 38 (357)
T TIGR03158 1 HQVATFEALQSKDA-----DIIFNTAPTGAGKTLAWLTPLLHG------------------------------------- 38 (357)
T ss_pred CHHHHHHHHHcCCC-----CEEEEECCCCCCHHHHHHHHHHHc-------------------------------------
Confidence 89999999986532 124678899999999876655421
Q ss_pred ccccccccCCCCCCccchhhhhhcCCCCCcEEEEeCh-hhHHHHHHHHHHHhcC---CCCcEEEEEcCCCCCC-------
Q 001825 750 ESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPT-SVLRQWAEELRNKVTS---KGSLSVLVYHGSSRTK------- 818 (1009)
Q Consensus 750 ~~~~C~~~s~~~s~~s~~~~~q~~~rpa~~TLIVcP~-SLL~QW~~EI~K~~~~---~~~LkVlVy~Gs~R~k------- 818 (1009)
..++|+|+|. +|+.||.+.+++++.. .....+..+.|.....
T Consensus 39 ---------------------------~~~~~~~~P~~aL~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~d~~~~~~~ 91 (357)
T TIGR03158 39 ---------------------------ENDTIALYPTNALIEDQTEAIKEFVDVFKPERDVNLLHVSKATLKDIKEYAND 91 (357)
T ss_pred ---------------------------CCCEEEEeChHHHHHHHHHHHHHHHHhcCCCCCceEEEecCCchHHHHHhhhh
Confidence 0247999997 5889999999988731 1246777787752110
Q ss_pred -----C----------cccccCCCEEEEehhhhh
Q 001825 819 -----D----------PCELAKFDVVITTYSIVS 837 (1009)
Q Consensus 819 -----~----------~~~LakyDVVITTYstLs 837 (1009)
. .......++++|+.+++.
T Consensus 92 ~~~~~~g~~~~~~~r~~~~~~~p~illT~p~~l~ 125 (357)
T TIGR03158 92 KVGSSKGEKLYNLLRNPIGTSTPIILLTNPDIFV 125 (357)
T ss_pred hcccCccchhhhhHHHHHhcCCCCEEEecHHHHH
Confidence 0 001235778999998874
No 64
>PRK13767 ATP-dependent helicase; Provisional
Probab=98.13 E-value=1.8e-05 Score=100.11 Aligned_cols=114 Identities=17% Similarity=0.205 Sum_probs=71.1
Q ss_pred CCchhHHHHHHHHHhccccCCCCcccEEEcCCCchHHHHHHHHHHHcCCCCCCCcchhhhhhhhcccccccccccccccc
Q 001825 666 PLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGIQVNGLD 745 (1009)
Q Consensus 666 ~LrPHQkegV~WMlqrE~s~~~~rGGILADEMGLGKTVqaIALIl~~r~~~~~~~~~~k~~~e~l~~de~~d~~~~~~~~ 745 (1009)
.|+|+|..++..+++- +..|++-..|.|||+.++..++....
T Consensus 32 ~~tpiQ~~Ai~~il~g-------~nvli~APTGSGKTlaa~Lpil~~l~------------------------------- 73 (876)
T PRK13767 32 TFTPPQRYAIPLIHEG-------KNVLISSPTGSGKTLAAFLAIIDELF------------------------------- 73 (876)
T ss_pred CCCHHHHHHHHHHHcC-------CCEEEECCCCCcHHHHHHHHHHHHHH-------------------------------
Confidence 3899999999987632 45899999999999987654432110
Q ss_pred ccccccccccccCCCCCCccchhhhhhcCCCCCcEEEEeCh-hhHHHHHHHHH-------HHh---c-CCCCcEEEEEcC
Q 001825 746 LVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPT-SVLRQWAEELR-------NKV---T-SKGSLSVLVYHG 813 (1009)
Q Consensus 746 ~~k~~~~~C~~~s~~~s~~s~~~~~q~~~rpa~~TLIVcP~-SLL~QW~~EI~-------K~~---~-~~~~LkVlVy~G 813 (1009)
... .. ........+|+|+|. .|..|+.+.+. +++ . ..+.+++.+.+|
T Consensus 74 --~~~-~~------------------~~~~~~~~~LyIsPtraLa~di~~~L~~~l~~i~~~~~~~g~~~~~i~v~v~~G 132 (876)
T PRK13767 74 --RLG-RE------------------GELEDKVYCLYVSPLRALNNDIHRNLEEPLTEIREIAKERGEELPEIRVAIRTG 132 (876)
T ss_pred --hhc-cc------------------cCCCCCeEEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCeeEEEEcC
Confidence 000 00 000011248999997 47788776443 333 1 112578889999
Q ss_pred CCCCCCccc-c-cCCCEEEEehhhhhc
Q 001825 814 SSRTKDPCE-L-AKFDVVITTYSIVSM 838 (1009)
Q Consensus 814 s~R~k~~~~-L-akyDVVITTYstLs~ 838 (1009)
......... + ...+|+|||.+.+..
T Consensus 133 dt~~~~r~~~l~~~p~IlVtTPE~L~~ 159 (876)
T PRK13767 133 DTSSYEKQKMLKKPPHILITTPESLAI 159 (876)
T ss_pred CCCHHHHHHHHhCCCCEEEecHHHHHH
Confidence 864432221 1 357999999998853
No 65
>PRK09401 reverse gyrase; Reviewed
Probab=98.03 E-value=5.2e-05 Score=98.16 Aligned_cols=105 Identities=20% Similarity=0.201 Sum_probs=66.8
Q ss_pred CCCchhHHHHHHHHHhccccCCCCcccEEEcCCCchHHHHHHHHHHHcCCCCCCCcchhhhhhhhccccccccccccccc
Q 001825 665 VPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGIQVNGL 744 (1009)
Q Consensus 665 v~LrPHQkegV~WMlqrE~s~~~~rGGILADEMGLGKTVqaIALIl~~r~~~~~~~~~~k~~~e~l~~de~~d~~~~~~~ 744 (1009)
..++++|+.++..+++. +..++.-..|.|||..++.+++...
T Consensus 79 ~~pt~iQ~~~i~~il~g-------~dv~i~ApTGsGKT~f~l~~~~~l~------------------------------- 120 (1176)
T PRK09401 79 SKPWSLQRTWAKRLLLG-------ESFAIIAPTGVGKTTFGLVMSLYLA------------------------------- 120 (1176)
T ss_pred CCCcHHHHHHHHHHHCC-------CcEEEEcCCCCCHHHHHHHHHHHHH-------------------------------
Confidence 46899999999887742 4467777999999964332221100
Q ss_pred cccccccccccccCCCCCCccchhhhhhcCCCCCcEEEEeChh-hHHHHHHHHHHHhcCCCCcEEEEEcCCCCC--CC--
Q 001825 745 DLVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTS-VLRQWAEELRNKVTSKGSLSVLVYHGSSRT--KD-- 819 (1009)
Q Consensus 745 ~~~k~~~~~C~~~s~~~s~~s~~~~~q~~~rpa~~TLIVcP~S-LL~QW~~EI~K~~~~~~~LkVlVy~Gs~R~--k~-- 819 (1009)
.....+|||||.. |+.||.+.+.++... ..+.+.+..|.... ..
T Consensus 121 ------------------------------~~g~~alIL~PTreLa~Qi~~~l~~l~~~-~~~~~~~~~g~~~~~~~ek~ 169 (1176)
T PRK09401 121 ------------------------------KKGKKSYIIFPTRLLVEQVVEKLEKFGEK-VGCGVKILYYHSSLKKKEKE 169 (1176)
T ss_pred ------------------------------hcCCeEEEEeccHHHHHHHHHHHHHHhhh-cCceEEEEEccCCcchhHHH
Confidence 0023589999985 889999999988653 23444443332211 11
Q ss_pred --cccc--cCCCEEEEehhhhhc
Q 001825 820 --PCEL--AKFDVVITTYSIVSM 838 (1009)
Q Consensus 820 --~~~L--akyDVVITTYstLs~ 838 (1009)
...+ ..++|+|+|...+..
T Consensus 170 ~~~~~l~~~~~~IlV~Tp~rL~~ 192 (1176)
T PRK09401 170 EFLERLKEGDFDILVTTSQFLSK 192 (1176)
T ss_pred HHHHHHhcCCCCEEEECHHHHHH
Confidence 1112 368999999988753
No 66
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=98.02 E-value=4.1e-05 Score=95.23 Aligned_cols=104 Identities=17% Similarity=0.183 Sum_probs=72.0
Q ss_pred CCchhHHHHHHHHHhccccCCCCcccEEEcCCCchHHHHHHHHHHHcCCCCCCCcchhhhhhhhcccccccccccccccc
Q 001825 666 PLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGIQVNGLD 745 (1009)
Q Consensus 666 ~LrPHQkegV~WMlqrE~s~~~~rGGILADEMGLGKTVqaIALIl~~r~~~~~~~~~~k~~~e~l~~de~~d~~~~~~~~ 745 (1009)
.|++||.+++..+++- +..|++-..|.|||+..+--++...
T Consensus 36 ~p~~~Q~~ai~~il~G-------~nvvv~apTGSGKTla~~LPiL~~l-------------------------------- 76 (742)
T TIGR03817 36 RPWQHQARAAELAHAG-------RHVVVATGTASGKSLAYQLPVLSAL-------------------------------- 76 (742)
T ss_pred cCCHHHHHHHHHHHCC-------CCEEEECCCCCcHHHHHHHHHHHHH--------------------------------
Confidence 4899999999988742 5578899999999987654443210
Q ss_pred ccccccccccccCCCCCCccchhhhhhcCCCCCcEEEEeChh-hHHHHHHHHHHHhcCCCCcEEEEEcCCCCCCCccc-c
Q 001825 746 LVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTS-VLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCE-L 823 (1009)
Q Consensus 746 ~~k~~~~~C~~~s~~~s~~s~~~~~q~~~rpa~~TLIVcP~S-LL~QW~~EI~K~~~~~~~LkVlVy~Gs~R~k~~~~-L 823 (1009)
...+...+|||+|.- |..|=.+++.++. ...+++.+|+|......... .
T Consensus 77 ---------------------------~~~~~~~aL~l~PtraLa~q~~~~l~~l~--~~~i~v~~~~Gdt~~~~r~~i~ 127 (742)
T TIGR03817 77 ---------------------------ADDPRATALYLAPTKALAADQLRAVRELT--LRGVRPATYDGDTPTEERRWAR 127 (742)
T ss_pred ---------------------------hhCCCcEEEEEcChHHHHHHHHHHHHHhc--cCCeEEEEEeCCCCHHHHHHHh
Confidence 000113589999985 7788888888774 23588889999754322222 2
Q ss_pred cCCCEEEEehhhhh
Q 001825 824 AKFDVVITTYSIVS 837 (1009)
Q Consensus 824 akyDVVITTYstLs 837 (1009)
...+|||||-+.+.
T Consensus 128 ~~~~IivtTPd~L~ 141 (742)
T TIGR03817 128 EHARYVLTNPDMLH 141 (742)
T ss_pred cCCCEEEEChHHHH
Confidence 35799999988874
No 67
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=97.98 E-value=3.9e-05 Score=97.42 Aligned_cols=167 Identities=14% Similarity=0.103 Sum_probs=99.5
Q ss_pred CCCchhHHHHHHHHHhccccCCCCcccEEEcCCCchHHHHHHHHHHHcCCCCCCCcchhhhhhhhccccccccccccccc
Q 001825 665 VPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGIQVNGL 744 (1009)
Q Consensus 665 v~LrPHQkegV~WMlqrE~s~~~~rGGILADEMGLGKTVqaIALIl~~r~~~~~~~~~~k~~~e~l~~de~~d~~~~~~~ 744 (1009)
..++|+|++++..++.. +-.|+.-..|-|||+..+--++..
T Consensus 459 ~sFRp~Q~eaI~aiL~G-------rDVLVimPTGSGKSLcYQLPAL~~-------------------------------- 499 (1195)
T PLN03137 459 HSFRPNQREIINATMSG-------YDVFVLMPTGGGKSLTYQLPALIC-------------------------------- 499 (1195)
T ss_pred CCCCHHHHHHHHHHHcC-------CCEEEEcCCCccHHHHHHHHHHHc--------------------------------
Confidence 35899999999988742 457888999999998753333210
Q ss_pred cccccccccccccCCCCCCccchhhhhhcCCCCCcEEEEeChh-hHHHHHHHHHHHhcCCCCcEEEEEcCCCCCCC----
Q 001825 745 DLVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTS-VLRQWAEELRNKVTSKGSLSVLVYHGSSRTKD---- 819 (1009)
Q Consensus 745 ~~~k~~~~~C~~~s~~~s~~s~~~~~q~~~rpa~~TLIVcP~S-LL~QW~~EI~K~~~~~~~LkVlVy~Gs~R~k~---- 819 (1009)
.+.||||+|.- |+.++...+... .+....+.+......
T Consensus 500 --------------------------------~GiTLVISPLiSLmqDQV~~L~~~-----GI~Aa~L~s~~s~~eq~~i 542 (1195)
T PLN03137 500 --------------------------------PGITLVISPLVSLIQDQIMNLLQA-----NIPAASLSAGMEWAEQLEI 542 (1195)
T ss_pred --------------------------------CCcEEEEeCHHHHHHHHHHHHHhC-----CCeEEEEECCCCHHHHHHH
Confidence 12489999984 665454544432 355555555432111
Q ss_pred cc----cccCCCEEEEehhhhhcccCCCCCCCchhHHHHhhhcCCCCCCcccccccccCCCCCCcccccccCCCCCCcch
Q 001825 820 PC----ELAKFDVVITTYSIVSMEVPKQPLGDKEDEEEKMKIEGEDLPPMYCSSSKKRKCPPSSDRKGSKQKKGPDGLLL 895 (1009)
Q Consensus 820 ~~----~LakyDVVITTYstLs~ev~k~~l~d~dde~ek~~~e~~~~~~~~~ssskkRK~~~~s~kk~s~~kk~~d~~~~ 895 (1009)
.. ....++||++|-+.+...-. . .
T Consensus 543 lr~l~s~~g~~~ILyvTPERL~~~d~-----------l-----------------------------------------l 570 (1195)
T PLN03137 543 LQELSSEYSKYKLLYVTPEKVAKSDS-----------L-----------------------------------------L 570 (1195)
T ss_pred HHHHHhcCCCCCEEEEChHHhhcchH-----------H-----------------------------------------H
Confidence 11 12568999999988742100 0 0
Q ss_pred hhccCcccccceeEEEEcccccccchhh---HHHHH----HHhcccCeEEEEeccCCCCCHHHHHHHHHhh
Q 001825 896 DIVAGPLAKVGWFRVVLDEAQSIKNHRT---QVARA----CWGLRAKRRWCLSGTPIQNAIDDLYSYFRFL 959 (1009)
Q Consensus 896 d~~~s~L~~i~W~RVILDEAH~IKN~~S---q~skA----l~~L~Ak~RW~LTGTPIQNsL~DLySLLrFL 959 (1009)
+.....-......+|||||||.+-.... .-++. ...+.....++||||.......|+...|.+.
T Consensus 571 ~~L~~L~~~~~LslIVIDEAHcVSqWGhDFRpdYr~L~~Lr~~fp~vPilALTATAT~~V~eDI~~~L~l~ 641 (1195)
T PLN03137 571 RHLENLNSRGLLARFVIDEAHCVSQWGHDFRPDYQGLGILKQKFPNIPVLALTATATASVKEDVVQALGLV 641 (1195)
T ss_pred HHHHhhhhccccceeccCcchhhhhcccchHHHHHHHHHHHHhCCCCCeEEEEecCCHHHHHHHHHHcCCC
Confidence 0000000112256799999998854321 11222 2233455679999999988888887766543
No 68
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.79 E-value=6.9e-05 Score=89.48 Aligned_cols=54 Identities=22% Similarity=0.258 Sum_probs=39.5
Q ss_pred cEEEEeChh-hHHHHHHHHHHHhcCCCCcEEEEEcCCCCCCCc----c--cccCCCEEEEehhhh
Q 001825 779 GTLVVCPTS-VLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDP----C--ELAKFDVVITTYSIV 836 (1009)
Q Consensus 779 ~TLIVcP~S-LL~QW~~EI~K~~~~~~~LkVlVy~Gs~R~k~~----~--~LakyDVVITTYstL 836 (1009)
.+|||+|.- |+.|+.+.|++.+. .++.++|+....... . ...+.+|||+|.+.+
T Consensus 27 ~vLvlvP~i~L~~Q~~~~l~~~f~----~~v~vlhs~~~~~er~~~~~~~~~g~~~IVVGTrsal 87 (505)
T TIGR00595 27 SVLVLVPEIALTPQMIQRFKYRFG----SQVAVLHSGLSDSEKLQAWRKVKNGEILVVIGTRSAL 87 (505)
T ss_pred eEEEEeCcHHHHHHHHHHHHHHhC----CcEEEEECCCCHHHHHHHHHHHHcCCCCEEECChHHH
Confidence 589999985 88999999998875 567888886433211 1 124678999998766
No 69
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=97.79 E-value=0.00011 Score=90.90 Aligned_cols=59 Identities=22% Similarity=0.209 Sum_probs=37.4
Q ss_pred cEEEEeChh-hHHHHHHHHHHHhcCCCCcEEEEEcCC-CC-CCC---cccccCCCEEEEehhhhhc
Q 001825 779 GTLVVCPTS-VLRQWAEELRNKVTSKGSLSVLVYHGS-SR-TKD---PCELAKFDVVITTYSIVSM 838 (1009)
Q Consensus 779 ~TLIVcP~S-LL~QW~~EI~K~~~~~~~LkVlVy~Gs-~R-~k~---~~~LakyDVVITTYstLs~ 838 (1009)
+++||+|+- |..||.+++..++... .+++.+..+. .. ... .......||+++|.+.|..
T Consensus 113 ~V~VVTpn~yLA~Rdae~m~~l~~~L-GLsv~~~~~~s~~~~~~~~~rr~~y~~dIvygTp~~Lgf 177 (762)
T TIGR03714 113 GAMLVTTNDYLAKRDAEEMGPVYEWL-GLTVSLGVVDDPDEEYDANEKRKIYNSDIVYTTNSALGF 177 (762)
T ss_pred ceEEeCCCHHHHHHHHHHHHHHHhhc-CCcEEEEECCCCccccCHHHHHHhCCCCEEEECchhhhh
Confidence 589999986 7799998887765422 3555543332 11 111 1223478999999988843
No 70
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=97.77 E-value=0.00019 Score=90.99 Aligned_cols=158 Identities=22% Similarity=0.235 Sum_probs=103.2
Q ss_pred CCCchhHHHHHHHHHhccccCCCCcccEEEcCCCchHHHHHHHHHHHcCCCCCCCcchhhhhhhhccccccccccccccc
Q 001825 665 VPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGIQVNGL 744 (1009)
Q Consensus 665 v~LrPHQkegV~WMlqrE~s~~~~rGGILADEMGLGKTVqaIALIl~~r~~~~~~~~~~k~~~e~l~~de~~d~~~~~~~ 744 (1009)
...-|-|..|+.-..+-..++ .+---+||-|+|.|||=.|+=.+...-
T Consensus 593 yeET~DQl~AI~eVk~DM~~~-kpMDRLiCGDVGFGKTEVAmRAAFkAV------------------------------- 640 (1139)
T COG1197 593 YEETPDQLKAIEEVKRDMESG-KPMDRLICGDVGFGKTEVAMRAAFKAV------------------------------- 640 (1139)
T ss_pred CcCCHHHHHHHHHHHHHhccC-CcchheeecCcCCcHHHHHHHHHHHHh-------------------------------
Confidence 345678999998877554433 224468999999999998875543210
Q ss_pred cccccccccccccCCCCCCccchhhhhhcCCCCCcEEEEeChhhH-HHHHHHHHHHhcCCCCcEEEEEcCCCCCCC----
Q 001825 745 DLVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTSVL-RQWAEELRNKVTSKGSLSVLVYHGSSRTKD---- 819 (1009)
Q Consensus 745 ~~~k~~~~~C~~~s~~~s~~s~~~~~q~~~rpa~~TLIVcP~SLL-~QW~~EI~K~~~~~~~LkVlVy~Gs~R~k~---- 819 (1009)
...+-+-|+||+.|| .|-.+.|++.+.. -.++|-++..-...+.
T Consensus 641 ------------------------------~~GKQVAvLVPTTlLA~QHy~tFkeRF~~-fPV~I~~LSRF~s~kE~~~i 689 (1139)
T COG1197 641 ------------------------------MDGKQVAVLVPTTLLAQQHYETFKERFAG-FPVRIEVLSRFRSAKEQKEI 689 (1139)
T ss_pred ------------------------------cCCCeEEEEcccHHhHHHHHHHHHHHhcC-CCeeEEEecccCCHHHHHHH
Confidence 001347899999976 7777888877652 2244444422211111
Q ss_pred --cccccCCCEEEEehhhhhcccCCCCCCCchhHHHHhhhcCCCCCCcccccccccCCCCCCcccccccCCCCCCcchhh
Q 001825 820 --PCELAKFDVVITTYSIVSMEVPKQPLGDKEDEEEKMKIEGEDLPPMYCSSSKKRKCPPSSDRKGSKQKKGPDGLLLDI 897 (1009)
Q Consensus 820 --~~~LakyDVVITTYstLs~ev~k~~l~d~dde~ek~~~e~~~~~~~~~ssskkRK~~~~s~kk~s~~kk~~d~~~~d~ 897 (1009)
...-.+.||||-|+..|...+.-
T Consensus 690 l~~la~G~vDIvIGTHrLL~kdv~F------------------------------------------------------- 714 (1139)
T COG1197 690 LKGLAEGKVDIVIGTHRLLSKDVKF------------------------------------------------------- 714 (1139)
T ss_pred HHHHhcCCccEEEechHhhCCCcEE-------------------------------------------------------
Confidence 11235789999999988654311
Q ss_pred ccCcccccceeEEEEcccccccchhhHHHHHHHhcccC-eEEEEeccCCCCCHH
Q 001825 898 VAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAK-RRWCLSGTPIQNAID 950 (1009)
Q Consensus 898 ~~s~L~~i~W~RVILDEAH~IKN~~Sq~skAl~~L~Ak-~RW~LTGTPIQNsL~ 950 (1009)
-.-.+||+||=|++.= +.-..++.|++. ..+-||||||+.+|.
T Consensus 715 -------kdLGLlIIDEEqRFGV---k~KEkLK~Lr~~VDvLTLSATPIPRTL~ 758 (1139)
T COG1197 715 -------KDLGLLIIDEEQRFGV---KHKEKLKELRANVDVLTLSATPIPRTLN 758 (1139)
T ss_pred -------ecCCeEEEechhhcCc---cHHHHHHHHhccCcEEEeeCCCCcchHH
Confidence 1135799999999853 333566777654 788999999998875
No 71
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=97.73 E-value=0.00013 Score=82.42 Aligned_cols=33 Identities=15% Similarity=0.255 Sum_probs=24.2
Q ss_pred CcEEEEeCh-hhHHHHHHHHHHHhcCCCCcEEEEEcCC
Q 001825 778 AGTLVVCPT-SVLRQWAEELRNKVTSKGSLSVLVYHGS 814 (1009)
Q Consensus 778 ~~TLIVcP~-SLL~QW~~EI~K~~~~~~~LkVlVy~Gs 814 (1009)
.++++|+|. +|+.|+.+.+.+++.. ++..+|+.
T Consensus 30 ~~ii~v~P~~~L~~q~~~~l~~~f~~----~~~~~~~~ 63 (358)
T TIGR01587 30 DRVIIALPTRATINAMYRRAKELFGS----NLGLLHSS 63 (358)
T ss_pred CeEEEEeehHHHHHHHHHHHHHHhCc----ccEEeecc
Confidence 368999997 5889999999988752 34445543
No 72
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=97.60 E-value=0.00025 Score=88.32 Aligned_cols=136 Identities=22% Similarity=0.268 Sum_probs=84.1
Q ss_pred cEEEEeCh-hhHHHHHHHHHHHhcCCCCcEEEEEcCCCCCCCcccccCCCEEEEehhhhhcccCCCCCCCchhHHHHhhh
Q 001825 779 GTLVVCPT-SVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCELAKFDVVITTYSIVSMEVPKQPLGDKEDEEEKMKI 857 (1009)
Q Consensus 779 ~TLIVcP~-SLL~QW~~EI~K~~~~~~~LkVlVy~Gs~R~k~~~~LakyDVVITTYstLs~ev~k~~l~d~dde~ek~~~ 857 (1009)
.++-|+|. +|...-.+-+.+.+. .-.++|.-++|+......+ .++.+|++||-+.+-..
T Consensus 166 KiVYIaPmKALa~Em~~~~~kkl~-~~gi~v~ELTGD~ql~~te-i~~tqiiVTTPEKwDvv------------------ 225 (1230)
T KOG0952|consen 166 KIVYIAPMKALAAEMVDKFSKKLA-PLGISVRELTGDTQLTKTE-IADTQIIVTTPEKWDVV------------------ 225 (1230)
T ss_pred eEEEEechHHHHHHHHHHHhhhcc-cccceEEEecCcchhhHHH-HHhcCEEEecccceeee------------------
Confidence 58999996 455555555555443 2258999999987655444 88999999997654110
Q ss_pred cCCCCCCcccccccccCCCCCCcccccccCCCCCCcchhhccCcccccceeEEEEcccccccchhhHHHH-----HHHhc
Q 001825 858 EGEDLPPMYCSSSKKRKCPPSSDRKGSKQKKGPDGLLLDIVAGPLAKVGWFRVVLDEAQSIKNHRTQVAR-----ACWGL 932 (1009)
Q Consensus 858 e~~~~~~~~~ssskkRK~~~~s~kk~s~~kk~~d~~~~d~~~s~L~~i~W~RVILDEAH~IKN~~Sq~sk-----Al~~L 932 (1009)
+ ||... + ..|. -...+||+||.|.+...+..... .++..
T Consensus 226 ------------T--Rk~~~-------------d--------~~l~-~~V~LviIDEVHlLhd~RGpvlEtiVaRtlr~v 269 (1230)
T KOG0952|consen 226 ------------T--RKSVG-------------D--------SALF-SLVRLVIIDEVHLLHDDRGPVLETIVARTLRLV 269 (1230)
T ss_pred ------------e--eeecc-------------c--------hhhh-hheeeEEeeeehhhcCcccchHHHHHHHHHHHH
Confidence 0 00000 0 0011 12468999999999887654443 33222
Q ss_pred ----ccCeEEEEeccCCCCCHHHHHHHHHhhCCCCCCChHHHHhhhc
Q 001825 933 ----RAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAVYKSFCSMIK 975 (1009)
Q Consensus 933 ----~Ak~RW~LTGTPIQNsL~DLySLLrFLrp~pf~~~~~F~~~f~ 975 (1009)
..-|-++|||| ++|- . .+.+||+..++.....|...|.
T Consensus 270 essqs~IRivgLSAT-lPN~-e---DvA~fL~vn~~~glfsFd~~yR 311 (1230)
T KOG0952|consen 270 ESSQSMIRIVGLSAT-LPNY-E---DVARFLRVNPYAGLFSFDQRYR 311 (1230)
T ss_pred HhhhhheEEEEeecc-CCCH-H---HHHHHhcCCCccceeeeccccc
Confidence 34577899999 3443 3 3567999988776666665553
No 73
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=97.53 E-value=0.00024 Score=92.18 Aligned_cols=105 Identities=23% Similarity=0.313 Sum_probs=68.4
Q ss_pred CCCchhHHHHHHHHHhccccCCCCcccEEEcCCCchHHHHHHHHHHHcCCCCCCCcchhhhhhhhccccccccccccccc
Q 001825 665 VPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGIQVNGL 744 (1009)
Q Consensus 665 v~LrPHQkegV~WMlqrE~s~~~~rGGILADEMGLGKTVqaIALIl~~r~~~~~~~~~~k~~~e~l~~de~~d~~~~~~~ 744 (1009)
..++++|+.++..++.. +..++.-..|.|||.-++.++....
T Consensus 77 ~~p~~iQ~~~i~~il~G-------~d~vi~ApTGsGKT~f~l~~~~~l~------------------------------- 118 (1171)
T TIGR01054 77 SEPWSIQKMWAKRVLRG-------DSFAIIAPTGVGKTTFGLAMSLFLA------------------------------- 118 (1171)
T ss_pred CCCcHHHHHHHHHHhCC-------CeEEEECCCCCCHHHHHHHHHHHHH-------------------------------
Confidence 45799999999888742 4467777999999974443332100
Q ss_pred cccccccccccccCCCCCCccchhhhhhcCCCCCcEEEEeChh-hHHHHHHHHHHHhcCCC--CcEEEEEcCCCCCCCc-
Q 001825 745 DLVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTS-VLRQWAEELRNKVTSKG--SLSVLVYHGSSRTKDP- 820 (1009)
Q Consensus 745 ~~~k~~~~~C~~~s~~~s~~s~~~~~q~~~rpa~~TLIVcP~S-LL~QW~~EI~K~~~~~~--~LkVlVy~Gs~R~k~~- 820 (1009)
. ....+|||+|.. |+.|+.+++.++....+ ...+..|||.......
T Consensus 119 ----------------------------~--~g~~vLIL~PTreLa~Qi~~~l~~l~~~~~i~~~~i~~~~Gg~~~~e~~ 168 (1171)
T TIGR01054 119 ----------------------------K--KGKRCYIILPTTLLVIQVAEKISSLAEKAGVGTVNIGAYHSRLPTKEKK 168 (1171)
T ss_pred ----------------------------h--cCCeEEEEeCHHHHHHHHHHHHHHHHHhcCCceeeeeeecCCCCHHHHH
Confidence 0 013589999986 77999999998875221 1123457776433211
Q ss_pred ---ccc--cCCCEEEEehhhhh
Q 001825 821 ---CEL--AKFDVVITTYSIVS 837 (1009)
Q Consensus 821 ---~~L--akyDVVITTYstLs 837 (1009)
..+ ..+||||+|...+.
T Consensus 169 ~~~~~l~~~~~dIlV~Tp~rL~ 190 (1171)
T TIGR01054 169 EFMERIENGDFDILITTTMFLS 190 (1171)
T ss_pred HHHHHHhcCCCCEEEECHHHHH
Confidence 112 35899999998874
No 74
>PRK14701 reverse gyrase; Provisional
Probab=97.43 E-value=0.00098 Score=88.87 Aligned_cols=104 Identities=16% Similarity=0.269 Sum_probs=68.9
Q ss_pred CCchhHHHHHHHHHhccccCCCCcccEEEcCCCchHHHHHHHHHHHcCCCCCCCcchhhhhhhhcccccccccccccccc
Q 001825 666 PLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGIQVNGLD 745 (1009)
Q Consensus 666 ~LrPHQkegV~WMlqrE~s~~~~rGGILADEMGLGKTVqaIALIl~~r~~~~~~~~~~k~~~e~l~~de~~d~~~~~~~~ 745 (1009)
.+++.|+.++..+++. +..++.-..|.|||+..+.+.+...
T Consensus 79 ~pt~iQ~~~i~~il~G-------~d~li~APTGsGKTl~~~~~al~~~-------------------------------- 119 (1638)
T PRK14701 79 EFWSIQKTWAKRILRG-------KSFSIVAPTGMGKSTFGAFIALFLA-------------------------------- 119 (1638)
T ss_pred CCCHHHHHHHHHHHcC-------CCEEEEEcCCCCHHHHHHHHHHHHH--------------------------------
Confidence 5799999999998853 3457777999999983221111100
Q ss_pred ccccccccccccCCCCCCccchhhhhhcCCCCCcEEEEeChh-hHHHHHHHHHHHhcCC-CCcEEEEEcCCCCCCCc---
Q 001825 746 LVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTS-VLRQWAEELRNKVTSK-GSLSVLVYHGSSRTKDP--- 820 (1009)
Q Consensus 746 ~~k~~~~~C~~~s~~~s~~s~~~~~q~~~rpa~~TLIVcP~S-LL~QW~~EI~K~~~~~-~~LkVlVy~Gs~R~k~~--- 820 (1009)
.....+|||+|.. |+.|..+.+.++.... ..+++..++|.......
T Consensus 120 -----------------------------~~g~~aLVl~PTreLa~Qi~~~l~~l~~~~~~~v~v~~~~g~~s~~e~~~~ 170 (1638)
T PRK14701 120 -----------------------------LKGKKCYIILPTTLLVKQTVEKIESFCEKANLDVRLVYYHSNLRKKEKEEF 170 (1638)
T ss_pred -----------------------------hcCCeEEEEECHHHHHHHHHHHHHHHHhhcCCceeEEEEeCCCCHHHHHHH
Confidence 0012589999985 7899999999875421 13567778887543321
Q ss_pred -ccc--cCCCEEEEehhhhh
Q 001825 821 -CEL--AKFDVVITTYSIVS 837 (1009)
Q Consensus 821 -~~L--akyDVVITTYstLs 837 (1009)
..+ .++||+|+|-..+.
T Consensus 171 ~~~l~~g~~dILV~TPgrL~ 190 (1638)
T PRK14701 171 LERIENGDFDILVTTAQFLA 190 (1638)
T ss_pred HHHHhcCCCCEEEECCchhH
Confidence 112 36899999987663
No 75
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=97.36 E-value=0.00089 Score=67.88 Aligned_cols=43 Identities=16% Similarity=0.200 Sum_probs=23.3
Q ss_pred cccceeEEEEcccccccchhhHHHHH-HHhc---ccCeEEEEeccCCC
Q 001825 903 AKVGWFRVVLDEAQSIKNHRTQVARA-CWGL---RAKRRWCLSGTPIQ 946 (1009)
Q Consensus 903 ~~i~W~RVILDEAH~IKN~~Sq~skA-l~~L---~Ak~RW~LTGTPIQ 946 (1009)
....|+.||+||+|.. .+.+-..+- +..+ ...+.+.|||||--
T Consensus 92 ~~~~yd~II~DEcH~~-Dp~sIA~rg~l~~~~~~g~~~~i~mTATPPG 138 (148)
T PF07652_consen 92 RLKNYDVIIMDECHFT-DPTSIAARGYLRELAESGEAKVIFMTATPPG 138 (148)
T ss_dssp CTTS-SEEEECTTT---SHHHHHHHHHHHHHHHTTS-EEEEEESS-TT
T ss_pred cccCccEEEEeccccC-CHHHHhhheeHHHhhhccCeeEEEEeCCCCC
Confidence 3457999999999974 333333222 2222 22367899999963
No 76
>PHA02653 RNA helicase NPH-II; Provisional
Probab=97.36 E-value=0.0019 Score=79.82 Aligned_cols=56 Identities=13% Similarity=0.106 Sum_probs=33.0
Q ss_pred CcEEEEeChh-hHHHHHHHHHHHhcC--CCCcEEEEEcCCCCCCC-cccccCCCEEEEeh
Q 001825 778 AGTLVVCPTS-VLRQWAEELRNKVTS--KGSLSVLVYHGSSRTKD-PCELAKFDVVITTY 833 (1009)
Q Consensus 778 ~~TLIVcP~S-LL~QW~~EI~K~~~~--~~~LkVlVy~Gs~R~k~-~~~LakyDVVITTY 833 (1009)
..+||++|.- ++.|...++.+.+.. -....+.+..|...... .......++||.|.
T Consensus 223 ~~ilvt~PrreLa~qi~~~i~~~vg~~~~~g~~v~v~~Gg~~~~~~~t~~k~~~Ilv~T~ 282 (675)
T PHA02653 223 RPIVLSLPRVALVRLHSITLLKSLGFDEIDGSPISLKYGSIPDELINTNPKPYGLVFSTH 282 (675)
T ss_pred cEEEEECcHHHHHHHHHHHHHHHhCccccCCceEEEEECCcchHHhhcccCCCCEEEEeC
Confidence 4689999985 678999998775531 11245555555543210 11223567888874
No 77
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=97.24 E-value=0.0018 Score=81.96 Aligned_cols=65 Identities=17% Similarity=0.169 Sum_probs=43.3
Q ss_pred EEEEcccccccchhhHHHHHHHhcccCeEEEEeccCCC-------CC--HHHHHHHHHhhCCCCCCChHHHHhhhccccc
Q 001825 909 RVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQ-------NA--IDDLYSYFRFLRYDPFAVYKSFCSMIKVPIS 979 (1009)
Q Consensus 909 RVILDEAH~IKN~~Sq~skAl~~L~Ak~RW~LTGTPIQ-------Ns--L~DLySLLrFLrp~pf~~~~~F~~~f~~PIe 979 (1009)
.||+||+|++... .+.++++..|+....+..|||--. |. ..|.|+++- .|+....|.....+-|+
T Consensus 204 ivIiDEPh~~~~~-~k~~~~i~~lnpl~~lrysAT~~~~~~~~g~~~~~~~d~~NlvY-----~LdavdAyn~~LVK~I~ 277 (986)
T PRK15483 204 VVIIDEPHRFPRD-NKFYQAIEALKPQMIIRFGATFPDITEGKGKNKCTRKDYYNLQF-----DLNAVDSFNDGLVKGVD 277 (986)
T ss_pred EEEEECCCCCCcc-hHHHHHHHhcCcccEEEEeeecCCccccccccccccccccCcee-----ecCHHHHHHhCCcceEE
Confidence 5999999999662 346788999999998999999754 22 123444432 23445666666555443
No 78
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=97.20 E-value=0.0015 Score=81.49 Aligned_cols=177 Identities=20% Similarity=0.175 Sum_probs=108.4
Q ss_pred CCCchhHHHHHHHHHhccccCCCCcccEEEcCCCchHHHHHHHHHHHcCCCCCCCcchhhhhhhhccccccccccccccc
Q 001825 665 VPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGIQVNGL 744 (1009)
Q Consensus 665 v~LrPHQkegV~WMlqrE~s~~~~rGGILADEMGLGKTVqaIALIl~~r~~~~~~~~~~k~~~e~l~~de~~d~~~~~~~ 744 (1009)
..|.|+|+.|+.-+.+ +.+.++.-..|.|||..|+--++..-- +. ..+
T Consensus 21 ~~~t~~Q~~a~~~i~~-------G~nvLiiAPTGsGKTeAAfLpil~~l~-------------~~------~~~------ 68 (814)
T COG1201 21 TSLTPPQRYAIPEIHS-------GENVLIIAPTGSGKTEAAFLPVINELL-------------SL------GKG------ 68 (814)
T ss_pred CCCCHHHHHHHHHHhC-------CCceEEEcCCCCChHHHHHHHHHHHHH-------------hc------cCC------
Confidence 3579999999988872 266899999999999998755543110 00 000
Q ss_pred cccccccccccccCCCCCCccchhhhhhcCCCCCcEEEEeChh-hHHHHHHHHHHHhcCCCCcEEEEEcCCCCCCCcc--
Q 001825 745 DLVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTS-VLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPC-- 821 (1009)
Q Consensus 745 ~~~k~~~~~C~~~s~~~s~~s~~~~~q~~~rpa~~TLIVcP~S-LL~QW~~EI~K~~~~~~~LkVlVy~Gs~R~k~~~-- 821 (1009)
.....=.+|-|.|.- |-.--.+-+..+.. .-.+.|-+-||........
T Consensus 69 ----------------------------~~~~~i~~lYIsPLkALn~Di~~rL~~~~~-~~G~~v~vRhGDT~~~er~r~ 119 (814)
T COG1201 69 ----------------------------KLEDGIYALYISPLKALNNDIRRRLEEPLR-ELGIEVAVRHGDTPQSEKQKM 119 (814)
T ss_pred ----------------------------CCCCceEEEEeCcHHHHHHHHHHHHHHHHH-HcCCccceecCCCChHHhhhc
Confidence 000011479999974 44444444544433 2347778888875433222
Q ss_pred cccCCCEEEEehhhhhcccCCCCCCCchhHHHHhhhcCCCCCCcccccccccCCCCCCcccccccCCCCCCcchhhccCc
Q 001825 822 ELAKFDVVITTYSIVSMEVPKQPLGDKEDEEEKMKIEGEDLPPMYCSSSKKRKCPPSSDRKGSKQKKGPDGLLLDIVAGP 901 (1009)
Q Consensus 822 ~LakyDVVITTYstLs~ev~k~~l~d~dde~ek~~~e~~~~~~~~~ssskkRK~~~~s~kk~s~~kk~~d~~~~d~~~s~ 901 (1009)
...-.||+|||-+++.-.+.. .+. ...
T Consensus 120 ~~~PPdILiTTPEsL~lll~~---------------------------~~~--------------------------r~~ 146 (814)
T COG1201 120 LKNPPHILITTPESLAILLNS---------------------------PKF--------------------------REL 146 (814)
T ss_pred cCCCCcEEEeChhHHHHHhcC---------------------------HHH--------------------------HHH
Confidence 234589999999998543211 000 112
Q ss_pred ccccceeEEEEcccccccch--hhHHHHHHHhc---c-cCeEEEEeccCCCCCHHHHHHHHHhhCCC
Q 001825 902 LAKVGWFRVVLDEAQSIKNH--RTQVARACWGL---R-AKRRWCLSGTPIQNAIDDLYSYFRFLRYD 962 (1009)
Q Consensus 902 L~~i~W~RVILDEAH~IKN~--~Sq~skAl~~L---~-Ak~RW~LTGTPIQNsL~DLySLLrFLrp~ 962 (1009)
|..++ .|||||.|.+.+. ..+++-.+.+| . --.|+.||||= . ++.-+.+||...
T Consensus 147 l~~vr--~VIVDEiHel~~sKRG~~Lsl~LeRL~~l~~~~qRIGLSATV--~---~~~~varfL~g~ 206 (814)
T COG1201 147 LRDVR--YVIVDEIHALAESKRGVQLALSLERLRELAGDFQRIGLSATV--G---PPEEVAKFLVGF 206 (814)
T ss_pred hcCCc--EEEeehhhhhhccccchhhhhhHHHHHhhCcccEEEeehhcc--C---CHHHHHHHhcCC
Confidence 44444 5999999999753 35555555555 2 35799999993 3 445566777765
No 79
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=97.17 E-value=0.0053 Score=77.15 Aligned_cols=58 Identities=16% Similarity=0.121 Sum_probs=36.3
Q ss_pred EEEEeChh-hHHHHHHHHHHHhcCC----------------------CCcEEEEEcCCCCC-CCcccc-cCCCEEEEehh
Q 001825 780 TLVVCPTS-VLRQWAEELRNKVTSK----------------------GSLSVLVYHGSSRT-KDPCEL-AKFDVVITTYS 834 (1009)
Q Consensus 780 TLIVcP~S-LL~QW~~EI~K~~~~~----------------------~~LkVlVy~Gs~R~-k~~~~L-akyDVVITTYs 834 (1009)
.+++||.- |+.|=.++++++.... ..+++..+.|.... .....+ ...+|||.|.+
T Consensus 65 Lv~~vPtReLa~Qi~~~~~~~~k~l~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~~q~~~l~~~p~IIVgT~D 144 (844)
T TIGR02621 65 LVYVVNRRTVVDQVTEEAEKIGERLPDVPEVEAALWALCSTRPEKKDRPLAISTLRGQFADNDEWMLDPHRPAVIVGTVD 144 (844)
T ss_pred EEEeCchHHHHHHHHHHHHHHHHHhcccchhhhhhhhhhccccccccCCeEEEEEECCCChHHHHHhcCCCCcEEEECHH
Confidence 44466875 7799999988875421 13667766776433 222223 35689999976
Q ss_pred hhh
Q 001825 835 IVS 837 (1009)
Q Consensus 835 tLs 837 (1009)
.+.
T Consensus 145 ~i~ 147 (844)
T TIGR02621 145 MIG 147 (844)
T ss_pred HHc
Confidence 653
No 80
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=97.04 E-value=0.00045 Score=85.20 Aligned_cols=59 Identities=19% Similarity=0.074 Sum_probs=37.2
Q ss_pred cEEEEeChhh-HHHHHHHHHHHhcCCCCcEEEEEcCCCCCCCcccccCCCEEEEehhhhhc
Q 001825 779 GTLVVCPTSV-LRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCELAKFDVVITTYSIVSM 838 (1009)
Q Consensus 779 ~TLIVcP~SL-L~QW~~EI~K~~~~~~~LkVlVy~Gs~R~k~~~~LakyDVVITTYstLs~ 838 (1009)
.++||+|+-. ..|=.+++.+++.. -.+++.+..|..........-..||++.|...|..
T Consensus 99 ~V~VvTpt~~LA~qdae~~~~l~~~-LGLsv~~i~g~~~~~~r~~~y~~dIvyGT~~rlgf 158 (745)
T TIGR00963 99 GVHVVTVNDYLAQRDAEWMGQVYRF-LGLSVGLILSGMSPEERREAYACDITYGTNNELGF 158 (745)
T ss_pred CEEEEcCCHHHHHHHHHHHHHHhcc-CCCeEEEEeCCCCHHHHHHhcCCCEEEECCCchhh
Confidence 5899999974 45555555554442 13788877775443322333457999999887743
No 81
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=96.95 E-value=0.0027 Score=79.43 Aligned_cols=56 Identities=14% Similarity=0.181 Sum_probs=38.1
Q ss_pred cEEEEeChhhH-H---HHHHHHHHHhcCCCCcEEEEEcCCCC-CCCcccccCCCEEEEehhhhhc
Q 001825 779 GTLVVCPTSVL-R---QWAEELRNKVTSKGSLSVLVYHGSSR-TKDPCELAKFDVVITTYSIVSM 838 (1009)
Q Consensus 779 ~TLIVcP~SLL-~---QW~~EI~K~~~~~~~LkVlVy~Gs~R-~k~~~~LakyDVVITTYstLs~ 838 (1009)
.++||+|+-.| . .|...+.+++. +++.++.|... ..........||++.|...+.-
T Consensus 121 ~v~VvTpt~~LA~qd~e~~~~l~~~lG----l~v~~i~g~~~~~~~r~~~y~~dIvygT~~~l~f 181 (790)
T PRK09200 121 GVHLITVNDYLAKRDAEEMGQVYEFLG----LTVGLNFSDIDDASEKKAIYEADIIYTTNSELGF 181 (790)
T ss_pred CeEEEeCCHHHHHHHHHHHHHHHhhcC----CeEEEEeCCCCcHHHHHHhcCCCEEEECCccccc
Confidence 58999999744 4 45555555544 88888877654 3333344578999999877743
No 82
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=96.93 E-value=0.018 Score=59.70 Aligned_cols=39 Identities=26% Similarity=0.381 Sum_probs=27.4
Q ss_pred CCchhHHHHHHHHHhccccCCCCcc-cEEEcCCCchHHHHHHHHHHH
Q 001825 666 PLLRHQRIALSWMVQKETSSLHCSG-GILADDQGLGKTISTIALILK 711 (1009)
Q Consensus 666 ~LrPHQkegV~WMlqrE~s~~~~rG-GILADEMGLGKTVqaIALIl~ 711 (1009)
+|-+.|++|+..++.. .+ .++.-..|.|||-+..+++..
T Consensus 1 ~ln~~Q~~Ai~~~~~~-------~~~~~i~GpPGTGKT~~l~~~i~~ 40 (236)
T PF13086_consen 1 KLNESQREAIQSALSS-------NGITLIQGPPGTGKTTTLASIIAQ 40 (236)
T ss_dssp ---HHHHHHHHHHCTS-------SE-EEEE-STTSSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHcC-------CCCEEEECCCCCChHHHHHHHHHH
Confidence 3778999999888754 34 677788999999777666654
No 83
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=96.91 E-value=0.0043 Score=74.02 Aligned_cols=108 Identities=28% Similarity=0.259 Sum_probs=73.8
Q ss_pred cEEEEeChh-hHHHHHHHHHHHhcCCCCcEEEEEcCCCCCCCccccc-CCCEEEEehhhhhcccCCCCCCCchhHHHHhh
Q 001825 779 GTLVVCPTS-VLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCELA-KFDVVITTYSIVSMEVPKQPLGDKEDEEEKMK 856 (1009)
Q Consensus 779 ~TLIVcP~S-LL~QW~~EI~K~~~~~~~LkVlVy~Gs~R~k~~~~La-kyDVVITTYstLs~ev~k~~l~d~dde~ek~~ 856 (1009)
.+||++|.- |..|-.+++.++.....--.+++|-|.........+. ..||||+|-..+.-....
T Consensus 167 ~vLVL~PTRELA~QV~~~~~~~~~~~~~~~~cvyGG~~~~~Q~~~l~~gvdiviaTPGRl~d~le~-------------- 232 (519)
T KOG0331|consen 167 IVLVLAPTRELAVQVQAEAREFGKSLRLRSTCVYGGAPKGPQLRDLERGVDVVIATPGRLIDLLEE-------------- 232 (519)
T ss_pred eEEEEcCcHHHHHHHHHHHHHHcCCCCccEEEEeCCCCccHHHHHHhcCCcEEEeCChHHHHHHHc--------------
Confidence 489999996 8899999999887643322555666665555555555 499999999887532210
Q ss_pred hcCCCCCCcccccccccCCCCCCcccccccCCCCCCcchhhccCcccccceeEEEEccccccc--chhhHHHHHHHhc-c
Q 001825 857 IEGEDLPPMYCSSSKKRKCPPSSDRKGSKQKKGPDGLLLDIVAGPLAKVGWFRVVLDEAQSIK--NHRTQVARACWGL-R 933 (1009)
Q Consensus 857 ~e~~~~~~~~~ssskkRK~~~~s~kk~s~~kk~~d~~~~d~~~s~L~~i~W~RVILDEAH~IK--N~~Sq~skAl~~L-~ 933 (1009)
..+.--+..++|||||.++- ....++.+.+..+ +
T Consensus 233 -------------------------------------------g~~~l~~v~ylVLDEADrMldmGFe~qI~~Il~~i~~ 269 (519)
T KOG0331|consen 233 -------------------------------------------GSLNLSRVTYLVLDEADRMLDMGFEPQIRKILSQIPR 269 (519)
T ss_pred -------------------------------------------CCccccceeEEEeccHHhhhccccHHHHHHHHHhcCC
Confidence 00222234579999999884 4678888899999 5
Q ss_pred cCe-EEEEecc
Q 001825 934 AKR-RWCLSGT 943 (1009)
Q Consensus 934 Ak~-RW~LTGT 943 (1009)
..+ .++-|+|
T Consensus 270 ~~rQtlm~saT 280 (519)
T KOG0331|consen 270 PDRQTLMFSAT 280 (519)
T ss_pred CcccEEEEeee
Confidence 554 5666666
No 84
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=96.88 E-value=0.0099 Score=73.13 Aligned_cols=106 Identities=14% Similarity=0.053 Sum_probs=66.6
Q ss_pred cCCCchhHHHHHHHHHhccccCCCCcccEEEcCCCchHHHHHHHHHHHcCCCCCCCcchhhhhhhhcccccccccccccc
Q 001825 664 AVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGIQVNG 743 (1009)
Q Consensus 664 kv~LrPHQkegV~WMlqrE~s~~~~rGGILADEMGLGKTVqaIALIl~~r~~~~~~~~~~k~~~e~l~~de~~d~~~~~~ 743 (1009)
.+..+|-|..|+--|+ .|-|.--..|-|||++++..++...
T Consensus 101 g~~p~~VQ~~~~~~ll---------~G~Iae~~TGeGKTla~~lp~~~~a------------------------------ 141 (656)
T PRK12898 101 GQRHFDVQLMGGLALL---------SGRLAEMQTGEGKTLTATLPAGTAA------------------------------ 141 (656)
T ss_pred CCCCChHHHHHHHHHh---------CCCeeeeeCCCCcHHHHHHHHHHHh------------------------------
Confidence 4456677888887776 4557777899999998765554311
Q ss_pred ccccccccccccccCCCCCCccchhhhhhcCCCCCcEEEEeChh-hHHHHHHHHHHHhcCCCCcEEEEEcCCCCCCCccc
Q 001825 744 LDLVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTS-VLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCE 822 (1009)
Q Consensus 744 ~~~~k~~~~~C~~~s~~~s~~s~~~~~q~~~rpa~~TLIVcP~S-LL~QW~~EI~K~~~~~~~LkVlVy~Gs~R~k~~~~ 822 (1009)
.....++||+|+- |..|=.+++.+++.. -.+++.+..|.........
T Consensus 142 -------------------------------l~G~~v~VvTptreLA~qdae~~~~l~~~-lGlsv~~i~gg~~~~~r~~ 189 (656)
T PRK12898 142 -------------------------------LAGLPVHVITVNDYLAERDAELMRPLYEA-LGLTVGCVVEDQSPDERRA 189 (656)
T ss_pred -------------------------------hcCCeEEEEcCcHHHHHHHHHHHHHHHhh-cCCEEEEEeCCCCHHHHHH
Confidence 0013689999997 445444444444331 1377777766543322233
Q ss_pred ccCCCEEEEehhhhhccc
Q 001825 823 LAKFDVVITTYSIVSMEV 840 (1009)
Q Consensus 823 LakyDVVITTYstLs~ev 840 (1009)
....|||+.|-..|.-++
T Consensus 190 ~y~~dIvygT~~e~~FDy 207 (656)
T PRK12898 190 AYGADITYCTNKELVFDY 207 (656)
T ss_pred HcCCCEEEECCCchhhhh
Confidence 457899999988775544
No 85
>PRK09694 helicase Cas3; Provisional
Probab=96.76 E-value=0.0083 Score=76.16 Aligned_cols=39 Identities=18% Similarity=0.116 Sum_probs=27.3
Q ss_pred CCCchhHHHHHHHHHhccccCCCCcccEEEcCCCchHHHHHHHHHH
Q 001825 665 VPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALIL 710 (1009)
Q Consensus 665 v~LrPHQkegV~WMlqrE~s~~~~rGGILADEMGLGKTVqaIALIl 710 (1009)
...+|+|..+..-.. .+.-.||-..||.|||-.+|.++.
T Consensus 285 ~~p~p~Q~~~~~~~~-------~pgl~ileApTGsGKTEAAL~~A~ 323 (878)
T PRK09694 285 YQPRQLQTLVDALPL-------QPGLTIIEAPTGSGKTEAALAYAW 323 (878)
T ss_pred CCChHHHHHHHhhcc-------CCCeEEEEeCCCCCHHHHHHHHHH
Confidence 467899987642211 112368899999999999887764
No 86
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=96.76 E-value=0.0049 Score=79.08 Aligned_cols=47 Identities=21% Similarity=0.162 Sum_probs=29.0
Q ss_pred cCCCchhHHHHHHHHHhccccC---CCCcccEEEcCCCchHHHHHHHHHH
Q 001825 664 AVPLLRHQRIALSWMVQKETSS---LHCSGGILADDQGLGKTISTIALIL 710 (1009)
Q Consensus 664 kv~LrPHQkegV~WMlqrE~s~---~~~rGGILADEMGLGKTVqaIALIl 710 (1009)
+.--+.||..++.-.+.+-... ...+||++=|-+|-|||++++-+..
T Consensus 246 k~~~~~~q~~av~~~i~~~~~~~~~~~~~~G~IWHtqGSGKTlTm~~~A~ 295 (962)
T COG0610 246 KKYQRYAQYRAVQKAIKRILKASNPGDGKGGYIWHTQGSGKTLTMFKLAR 295 (962)
T ss_pred hhHHHHHHHHHHHHHHHHHHhccCCCcCCceEEEeecCCchHHHHHHHHH
Confidence 3333446666665222222111 2347899999999999999976653
No 87
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=96.61 E-value=0.0079 Score=75.61 Aligned_cols=108 Identities=31% Similarity=0.426 Sum_probs=73.2
Q ss_pred CCCchhHHHHHHHHHhccccCCCCcccEEEcCCCchHHHHHHHHHHHcCCCCCCCcchhhhhhhhccccccccccccccc
Q 001825 665 VPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGIQVNGL 744 (1009)
Q Consensus 665 v~LrPHQkegV~WMlqrE~s~~~~rGGILADEMGLGKTVqaIALIl~~r~~~~~~~~~~k~~~e~l~~de~~d~~~~~~~ 744 (1009)
.+++-.|+-.+..+++-. .=+|+| ..|+|||.-.+...+..-
T Consensus 81 ~~~ws~QR~WakR~~rg~------SFaiiA-PTGvGKTTfg~~~sl~~a------------------------------- 122 (1187)
T COG1110 81 FRPWSAQRVWAKRLVRGK------SFAIIA-PTGVGKTTFGLLMSLYLA------------------------------- 122 (1187)
T ss_pred CCchHHHHHHHHHHHcCC------ceEEEc-CCCCchhHHHHHHHHHHH-------------------------------
Confidence 467889999988888432 226777 689999975543332210
Q ss_pred cccccccccccccCCCCCCccchhhhhhcCCCCCcEEEEeChh-hHHHHHHHHHHHhcCCCCcEEEE-EcCCCCCCCc--
Q 001825 745 DLVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTS-VLRQWAEELRNKVTSKGSLSVLV-YHGSSRTKDP-- 820 (1009)
Q Consensus 745 ~~~k~~~~~C~~~s~~~s~~s~~~~~q~~~rpa~~TLIVcP~S-LL~QW~~EI~K~~~~~~~LkVlV-y~Gs~R~k~~-- 820 (1009)
...++.+||+|+. |+.|=.+-|.++....+.+.+.+ ||+.-..+..
T Consensus 123 ------------------------------~kgkr~yii~PT~~Lv~Q~~~kl~~~~e~~~~~~~~~~yh~~l~~~ekee 172 (1187)
T COG1110 123 ------------------------------KKGKRVYIIVPTTTLVRQVYERLKKFAEDAGSLDVLVVYHSALPTKEKEE 172 (1187)
T ss_pred ------------------------------hcCCeEEEEecCHHHHHHHHHHHHHHHhhcCCcceeeeeccccchHHHHH
Confidence 0014689999986 67999999999876444455444 9998554421
Q ss_pred ----ccccCCCEEEEehhhhhccc
Q 001825 821 ----CELAKFDVVITTYSIVSMEV 840 (1009)
Q Consensus 821 ----~~LakyDVVITTYstLs~ev 840 (1009)
..-.+|||+|||-..+.+.+
T Consensus 173 ~le~i~~gdfdIlitTs~FL~k~~ 196 (1187)
T COG1110 173 ALERIESGDFDILITTSQFLSKRF 196 (1187)
T ss_pred HHHHHhcCCccEEEEeHHHHHhhH
Confidence 22347999999998886543
No 88
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=96.59 E-value=0.0078 Score=70.76 Aligned_cols=117 Identities=16% Similarity=0.170 Sum_probs=79.8
Q ss_pred CCCchhHHHHHHHHHhccccCC--CCcccEEEcCCCchHHHHHHHHHHHcCCCCCCCcchhhhhhhhccccccccccccc
Q 001825 665 VPLLRHQRIALSWMVQKETSSL--HCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGIQVN 742 (1009)
Q Consensus 665 v~LrPHQkegV~WMlqrE~s~~--~~rGGILADEMGLGKTVqaIALIl~~r~~~~~~~~~~k~~~e~l~~de~~d~~~~~ 742 (1009)
..|+|-|..-+-|+++-.+.+. .+|--.++-..|-|||+.-.-=|+...
T Consensus 158 s~~FPVQ~aVlp~ll~~~~~p~~~r~rDIcV~ApTGSGKTLaY~iPIVQ~L----------------------------- 208 (620)
T KOG0350|consen 158 SRLFPVQYAVLPSLLEEIRSPPPSRPRDICVNAPTGSGKTLAYVIPIVQLL----------------------------- 208 (620)
T ss_pred ccccchHHHHHHHHHHhhcCCCCCCCCceEEecCCCCCceeeehhHHHHHH-----------------------------
Confidence 4589999999999987766432 234456777899999975322222210
Q ss_pred cccccccccccccccCCCCCCccchhhhhhcCCCCCcEEEEeChh-hHHHHHHHHHHHhcCCCCcEEEEEcCCCCCCCc-
Q 001825 743 GLDLVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTS-VLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDP- 820 (1009)
Q Consensus 743 ~~~~~k~~~~~C~~~s~~~s~~s~~~~~q~~~rpa~~TLIVcP~S-LL~QW~~EI~K~~~~~~~LkVlVy~Gs~R~k~~- 820 (1009)
.. +..+.-+.|||+|.. |+.|-.++|.++.. ...+.|....|.+..++.
T Consensus 209 -----~~-----------------------R~v~~LRavVivPtr~L~~QV~~~f~~~~~-~tgL~V~~~sgq~sl~~E~ 259 (620)
T KOG0350|consen 209 -----SS-----------------------RPVKRLRAVVIVPTRELALQVYDTFKRLNS-GTGLAVCSLSGQNSLEDEA 259 (620)
T ss_pred -----cc-----------------------CCccceEEEEEeeHHHHHHHHHHHHHHhcc-CCceEEEecccccchHHHH
Confidence 00 001123579999987 67999999999977 456889999998755421
Q ss_pred ------ccccCCCEEEEehhhhhcc
Q 001825 821 ------CELAKFDVVITTYSIVSME 839 (1009)
Q Consensus 821 ------~~LakyDVVITTYstLs~e 839 (1009)
...-+.||+++|-..|..+
T Consensus 260 ~qL~~~~~~~~~DIlVaTPGRLVDH 284 (620)
T KOG0350|consen 260 RQLASDPPECRIDILVATPGRLVDH 284 (620)
T ss_pred HHHhcCCCccccceEEcCchHHHHh
Confidence 1123679999999988544
No 89
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=96.58 E-value=0.0093 Score=75.11 Aligned_cols=55 Identities=22% Similarity=0.257 Sum_probs=36.0
Q ss_pred cEEEEeChh-hHHH---HHHHHHHHhcCCCCcEEEEEcCCCCCCCcccccCCCEEEEehhhhh
Q 001825 779 GTLVVCPTS-VLRQ---WAEELRNKVTSKGSLSVLVYHGSSRTKDPCELAKFDVVITTYSIVS 837 (1009)
Q Consensus 779 ~TLIVcP~S-LL~Q---W~~EI~K~~~~~~~LkVlVy~Gs~R~k~~~~LakyDVVITTYstLs 837 (1009)
.++||+|+- |..| |...+.+++. +++.+..|.............||++.|...|.
T Consensus 125 ~V~VvTpn~yLA~qd~e~m~~l~~~lG----Ltv~~i~gg~~~~~r~~~y~~dIvygT~grlg 183 (896)
T PRK13104 125 GVHIVTVNDYLAKRDSQWMKPIYEFLG----LTVGVIYPDMSHKEKQEAYKADIVYGTNNEYG 183 (896)
T ss_pred CEEEEcCCHHHHHHHHHHHHHHhcccC----ceEEEEeCCCCHHHHHHHhCCCEEEECChhhh
Confidence 589999997 4444 5555555443 78877777543333333346899999988873
No 90
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=96.56 E-value=0.014 Score=77.39 Aligned_cols=59 Identities=19% Similarity=0.234 Sum_probs=38.4
Q ss_pred cEEEEeChh-hHHHHHHHHHHHh----------c-CCCCcEEEEEcCCCCCCCcccc--cCCCEEEEehhhhh
Q 001825 779 GTLVVCPTS-VLRQWAEELRNKV----------T-SKGSLSVLVYHGSSRTKDPCEL--AKFDVVITTYSIVS 837 (1009)
Q Consensus 779 ~TLIVcP~S-LL~QW~~EI~K~~----------~-~~~~LkVlVy~Gs~R~k~~~~L--akyDVVITTYstLs 837 (1009)
.+|+|+|.- |..|=.+++++.+ . ....++|.+++|.........+ ...||+|||.+.+.
T Consensus 39 raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V~vrtGDt~~~eR~rll~~ppdILVTTPEsL~ 111 (1490)
T PRK09751 39 RILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRVGIRTGDTPAQERSKLTRNPPDILITTPESLY 111 (1490)
T ss_pred EEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEEEEEECCCCHHHHHHHhcCCCCEEEecHHHHH
Confidence 589999985 5555555554311 1 1125888899998655433322 36799999999884
No 91
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=96.48 E-value=0.019 Score=72.56 Aligned_cols=99 Identities=18% Similarity=0.175 Sum_probs=62.7
Q ss_pred CchhHHHHHHHHHhccccCCCCcccEEEcCCCchHHHHHHHHHHHcCCCCCCCcchhhhhhhhccccccccccccccccc
Q 001825 667 LLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGIQVNGLDL 746 (1009)
Q Consensus 667 LrPHQkegV~WMlqrE~s~~~~rGGILADEMGLGKTVqaIALIl~~r~~~~~~~~~~k~~~e~l~~de~~d~~~~~~~~~ 746 (1009)
|+|+|...+.-++.. +|-|.--..|.|||+..+.-++..-
T Consensus 93 ~tp~qvQ~I~~i~l~-------~gvIAeaqTGeGKTLAf~LP~l~~a--------------------------------- 132 (970)
T PRK12899 93 MVPYDVQILGAIAMH-------KGFITEMQTGEGKTLTAVMPLYLNA--------------------------------- 132 (970)
T ss_pred CChHHHHHhhhhhcC-------CCeEEEeCCCCChHHHHHHHHHHHH---------------------------------
Confidence 789998888777632 5666667899999998765443210
Q ss_pred cccccccccccCCCCCCccchhhhhhcCCCCCcEEEEeChh-hH---HHHHHHHHHHhcCCCCcEEEEEcCCCCCCCccc
Q 001825 747 VKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTS-VL---RQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCE 822 (1009)
Q Consensus 747 ~k~~~~~C~~~s~~~s~~s~~~~~q~~~rpa~~TLIVcP~S-LL---~QW~~EI~K~~~~~~~LkVlVy~Gs~R~k~~~~ 822 (1009)
.. .++++||+|+- |. .+|...+.+++. +++.+..|.........
T Consensus 133 -------------------------L~---g~~v~IVTpTrELA~Qdae~m~~L~k~lG----LsV~~i~GG~~~~eq~~ 180 (970)
T PRK12899 133 -------------------------LT---GKPVHLVTVNDYLAQRDCEWVGSVLRWLG----LTTGVLVSGSPLEKRKE 180 (970)
T ss_pred -------------------------hh---cCCeEEEeCCHHHHHHHHHHHHHHHhhcC----CeEEEEeCCCCHHHHHH
Confidence 00 12478999986 44 455555655543 77766665433322222
Q ss_pred ccCCCEEEEehhhhh
Q 001825 823 LAKFDVVITTYSIVS 837 (1009)
Q Consensus 823 LakyDVVITTYstLs 837 (1009)
....|||+.|-..|.
T Consensus 181 ~y~~DIVygTPgRLg 195 (970)
T PRK12899 181 IYQCDVVYGTASEFG 195 (970)
T ss_pred HcCCCEEEECCChhH
Confidence 236899999988773
No 92
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=96.30 E-value=0.023 Score=70.36 Aligned_cols=103 Identities=16% Similarity=0.192 Sum_probs=67.5
Q ss_pred ccCCCchhHHHHHHHHHhccccCCCCcccEEEcCCCchHHHHHHHHHHHcCCCCCCCcchhhhhhhhccccccccccccc
Q 001825 663 LAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGIQVN 742 (1009)
Q Consensus 663 Lkv~LrPHQkegV~WMlqrE~s~~~~rGGILADEMGLGKTVqaIALIl~~r~~~~~~~~~~k~~~e~l~~de~~d~~~~~ 742 (1009)
+....++-|+.|...|+ .|-|.=-..|-|||+++...+...-
T Consensus 75 lg~r~ydvQlig~l~Ll---------~G~VaEM~TGEGKTLvA~l~a~l~A----------------------------- 116 (764)
T PRK12326 75 LGLRPFDVQLLGALRLL---------AGDVIEMATGEGKTLAGAIAAAGYA----------------------------- 116 (764)
T ss_pred cCCCcchHHHHHHHHHh---------CCCcccccCCCCHHHHHHHHHHHHH-----------------------------
Confidence 34455677999998887 4555555669999999865543210
Q ss_pred cccccccccccccccCCCCCCccchhhhhhcCCCCCcEEEEeChhhH----HHHHHHHHHHhcCCCCcEEEEEcCCCCCC
Q 001825 743 GLDLVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTSVL----RQWAEELRNKVTSKGSLSVLVYHGSSRTK 818 (1009)
Q Consensus 743 ~~~~~k~~~~~C~~~s~~~s~~s~~~~~q~~~rpa~~TLIVcP~SLL----~QW~~EI~K~~~~~~~LkVlVy~Gs~R~k 818 (1009)
...+++.||+|+..| .+|...+-+++. ++|-+..+.....
T Consensus 117 --------------------------------L~G~~VhvvT~NdyLA~RDae~m~~ly~~LG----Lsvg~i~~~~~~~ 160 (764)
T PRK12326 117 --------------------------------LQGRRVHVITVNDYLARRDAEWMGPLYEALG----LTVGWITEESTPE 160 (764)
T ss_pred --------------------------------HcCCCeEEEcCCHHHHHHHHHHHHHHHHhcC----CEEEEECCCCCHH
Confidence 012368899999865 467766666665 8888877765443
Q ss_pred CcccccCCCEEEEehhhhhcc
Q 001825 819 DPCELAKFDVVITTYSIVSME 839 (1009)
Q Consensus 819 ~~~~LakyDVVITTYstLs~e 839 (1009)
.....-.+||+-+|-..+.-+
T Consensus 161 err~aY~~DItYgTn~e~gFD 181 (764)
T PRK12326 161 ERRAAYACDVTYASVNEIGFD 181 (764)
T ss_pred HHHHHHcCCCEEcCCcccccc
Confidence 344455788877776665443
No 93
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=96.02 E-value=0.017 Score=72.80 Aligned_cols=58 Identities=21% Similarity=0.226 Sum_probs=38.9
Q ss_pred CcEEEEeChhhH-H---HHHHHHHHHhcCCCCcEEEEEcCCCCCCCcccccCCCEEEEehhhhhcc
Q 001825 778 AGTLVVCPTSVL-R---QWAEELRNKVTSKGSLSVLVYHGSSRTKDPCELAKFDVVITTYSIVSME 839 (1009)
Q Consensus 778 ~~TLIVcP~SLL-~---QW~~EI~K~~~~~~~LkVlVy~Gs~R~k~~~~LakyDVVITTYstLs~e 839 (1009)
..+.||+|+-.| . +|...+-+++. ++|-++.+..........-.+||+..|...+.-+
T Consensus 124 ~~VhvvT~ndyLA~RD~e~m~~l~~~lG----l~v~~i~~~~~~~err~~Y~~dI~YGT~~e~gFD 185 (913)
T PRK13103 124 KGVHVVTVNDYLARRDANWMRPLYEFLG----LSVGIVTPFQPPEEKRAAYAADITYGTNNEFGFD 185 (913)
T ss_pred CCEEEEeCCHHHHHHHHHHHHHHhcccC----CEEEEECCCCCHHHHHHHhcCCEEEEcccccccc
Confidence 357899999765 3 45555544443 7888887765444444555699999999887443
No 94
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=95.98 E-value=0.038 Score=69.53 Aligned_cols=56 Identities=23% Similarity=0.246 Sum_probs=36.8
Q ss_pred cEEEEeChhhH-HH---HHHHHHHHhcCCCCcEEEEEcCCCCCCCcccccCCCEEEEehhhhhc
Q 001825 779 GTLVVCPTSVL-RQ---WAEELRNKVTSKGSLSVLVYHGSSRTKDPCELAKFDVVITTYSIVSM 838 (1009)
Q Consensus 779 ~TLIVcP~SLL-~Q---W~~EI~K~~~~~~~LkVlVy~Gs~R~k~~~~LakyDVVITTYstLs~ 838 (1009)
.+-||+|+-.| .| |...+-+++. +++.+..|..........-..||++.|...|.-
T Consensus 124 ~V~IvTpn~yLA~rd~e~~~~l~~~LG----lsv~~i~~~~~~~er~~~y~~dI~ygT~~elgf 183 (830)
T PRK12904 124 GVHVVTVNDYLAKRDAEWMGPLYEFLG----LSVGVILSGMSPEERREAYAADITYGTNNEFGF 183 (830)
T ss_pred CEEEEecCHHHHHHHHHHHHHHHhhcC----CeEEEEcCCCCHHHHHHhcCCCeEEECCcchhh
Confidence 46699999744 44 5555555544 788888776444333333468999999988744
No 95
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=95.92 E-value=0.079 Score=63.87 Aligned_cols=115 Identities=28% Similarity=0.316 Sum_probs=75.5
Q ss_pred EEEEeChh-hHHHHHHHHHHHhcCCCCcEEEEEcCCCCC-CCccccc-CCCEEEEehhhhhcccCCCCCCCchhHHHHhh
Q 001825 780 TLVVCPTS-VLRQWAEELRNKVTSKGSLSVLVYHGSSRT-KDPCELA-KFDVVITTYSIVSMEVPKQPLGDKEDEEEKMK 856 (1009)
Q Consensus 780 TLIVcP~S-LL~QW~~EI~K~~~~~~~LkVlVy~Gs~R~-k~~~~La-kyDVVITTYstLs~ev~k~~l~d~dde~ek~~ 856 (1009)
.||++|.- |..|-.+++.++....+.+++..+.|.... .....+. ..||||.|-..+...+..
T Consensus 102 aLil~PTRELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~~l~~~~~ivVaTPGRllD~i~~-------------- 167 (513)
T COG0513 102 ALILAPTRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEALKRGVDIVVATPGRLLDLIKR-------------- 167 (513)
T ss_pred eEEECCCHHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHHHHHhcCCCEEEECccHHHHHHHc--------------
Confidence 89999996 779999999887653325776666665432 2223333 399999999887532211
Q ss_pred hcCCCCCCcccccccccCCCCCCcccccccCCCCCCcchhhccCcccccceeEEEEcccccccch--hhHHHHHHHhccc
Q 001825 857 IEGEDLPPMYCSSSKKRKCPPSSDRKGSKQKKGPDGLLLDIVAGPLAKVGWFRVVLDEAQSIKNH--RTQVARACWGLRA 934 (1009)
Q Consensus 857 ~e~~~~~~~~~ssskkRK~~~~s~kk~s~~kk~~d~~~~d~~~s~L~~i~W~RVILDEAH~IKN~--~Sq~skAl~~L~A 934 (1009)
..|.--....+|+|||-++-+. ...+...+..+..
T Consensus 168 -------------------------------------------~~l~l~~v~~lVlDEADrmLd~Gf~~~i~~I~~~~p~ 204 (513)
T COG0513 168 -------------------------------------------GKLDLSGVETLVLDEADRMLDMGFIDDIEKILKALPP 204 (513)
T ss_pred -------------------------------------------CCcchhhcCEEEeccHhhhhcCCCHHHHHHHHHhCCc
Confidence 0023334457999999998664 3445555556654
Q ss_pred -CeEEEEeccCCCCCHHHH
Q 001825 935 -KRRWCLSGTPIQNAIDDL 952 (1009)
Q Consensus 935 -k~RW~LTGTPIQNsL~DL 952 (1009)
+..++.|||.-. .+.+|
T Consensus 205 ~~qtllfSAT~~~-~i~~l 222 (513)
T COG0513 205 DRQTLLFSATMPD-DIREL 222 (513)
T ss_pred ccEEEEEecCCCH-HHHHH
Confidence 566888999877 45554
No 96
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=95.79 E-value=0.058 Score=68.73 Aligned_cols=42 Identities=17% Similarity=0.185 Sum_probs=28.6
Q ss_pred CCCchhHHHHHHHHHhccccCCCCcccEEEcCCCchHHHHHHHHH
Q 001825 665 VPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 709 (1009)
Q Consensus 665 v~LrPHQkegV~WMlqrE~s~~~~rGGILADEMGLGKTVqaIALI 709 (1009)
...||+|.+.+..+.+....+ +..++--..|.|||+..|.-+
T Consensus 244 ~~~r~~Q~~~~~~i~~~~~~~---~~~~~eA~TG~GKT~ayLlp~ 285 (850)
T TIGR01407 244 LEYRPEQLKLAELVLDQLTHS---EKSLIEAPTGTGKTLGYLLPA 285 (850)
T ss_pred CccCHHHHHHHHHHHHHhccC---CcEEEECCCCCchhHHHHHHH
Confidence 457999998777666554332 234444589999998876554
No 97
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=95.79 E-value=0.063 Score=67.87 Aligned_cols=56 Identities=14% Similarity=0.087 Sum_probs=37.5
Q ss_pred cEEEEeChhhH----HHHHHHHHHHhcCCCCcEEEEEcCCCCCCCcccccCCCEEEEehhhhhc
Q 001825 779 GTLVVCPTSVL----RQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCELAKFDVVITTYSIVSM 838 (1009)
Q Consensus 779 ~TLIVcP~SLL----~QW~~EI~K~~~~~~~LkVlVy~Gs~R~k~~~~LakyDVVITTYstLs~ 838 (1009)
+++||+|+--| ..|...|.+++. ++|-+..+..........-.+||+..|-..|.-
T Consensus 125 ~VhIvT~ndyLA~RD~e~m~~l~~~lG----lsv~~i~~~~~~~~r~~~Y~~dI~YgT~~e~gf 184 (908)
T PRK13107 125 GVHVITVNDYLARRDAENNRPLFEFLG----LTVGINVAGLGQQEKKAAYNADITYGTNNEFGF 184 (908)
T ss_pred CEEEEeCCHHHHHHHHHHHHHHHHhcC----CeEEEecCCCCHHHHHhcCCCCeEEeCCCcccc
Confidence 58999998743 578888888865 787766554332222222367999998877643
No 98
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=95.69 E-value=0.053 Score=69.45 Aligned_cols=162 Identities=19% Similarity=0.176 Sum_probs=102.6
Q ss_pred ccCCCchhHHHHHHHHHhccccCCCCcccEEEcCCCchHHHHHHHHHHHcCCCCCCCcchhhhhhhhccccccccccccc
Q 001825 663 LAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGIQVN 742 (1009)
Q Consensus 663 Lkv~LrPHQkegV~WMlqrE~s~~~~rGGILADEMGLGKTVqaIALIl~~r~~~~~~~~~~k~~~e~l~~de~~d~~~~~ 742 (1009)
....|-++|++|+.-+.+- .+.++|--.|-|||+.+-.+|....
T Consensus 116 ~~F~LD~fQ~~a~~~Ler~-------esVlV~ApTssGKTvVaeyAi~~al----------------------------- 159 (1041)
T COG4581 116 YPFELDPFQQEAIAILERG-------ESVLVCAPTSSGKTVVAEYAIALAL----------------------------- 159 (1041)
T ss_pred CCCCcCHHHHHHHHHHhCC-------CcEEEEccCCCCcchHHHHHHHHHH-----------------------------
Confidence 4578999999999888743 4578999999999999877764311
Q ss_pred cccccccccccccccCCCCCCccchhhhhhcCCCCCcEEEEeCh-hhHHHHHHHHHHHhcCCCCcEEEEEcCCCCCCCcc
Q 001825 743 GLDLVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPT-SVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPC 821 (1009)
Q Consensus 743 ~~~~~k~~~~~C~~~s~~~s~~s~~~~~q~~~rpa~~TLIVcP~-SLL~QW~~EI~K~~~~~~~LkVlVy~Gs~R~k~~~ 821 (1009)
+...++.-..|- +|-.|=-++|...+..- .--+-+++|+....
T Consensus 160 --------------------------------~~~qrviYTsPIKALsNQKyrdl~~~fgdv-~~~vGL~TGDv~IN--- 203 (1041)
T COG4581 160 --------------------------------RDGQRVIYTSPIKALSNQKYRDLLAKFGDV-ADMVGLMTGDVSIN--- 203 (1041)
T ss_pred --------------------------------HcCCceEeccchhhhhhhHHHHHHHHhhhh-hhhccceecceeeC---
Confidence 001135666774 57788888887776521 11234566654332
Q ss_pred cccCCCEEEEehhhhhcccCCCCCCCchhHHHHhhhcCCCCCCcccccccccCCCCCCcccccccCCCCCCcchhhccCc
Q 001825 822 ELAKFDVVITTYSIVSMEVPKQPLGDKEDEEEKMKIEGEDLPPMYCSSSKKRKCPPSSDRKGSKQKKGPDGLLLDIVAGP 901 (1009)
Q Consensus 822 ~LakyDVVITTYstLs~ev~k~~l~d~dde~ek~~~e~~~~~~~~~ssskkRK~~~~s~kk~s~~kk~~d~~~~d~~~s~ 901 (1009)
.++.++++|-++|++.... +. ..
T Consensus 204 --~~A~clvMTTEILRnMlyr----------------g~---------------------------------------~~ 226 (1041)
T COG4581 204 --PDAPCLVMTTEILRNMLYR----------------GS---------------------------------------ES 226 (1041)
T ss_pred --CCCceEEeeHHHHHHHhcc----------------Cc---------------------------------------cc
Confidence 4667888777998765432 10 01
Q ss_pred ccccceeEEEEcccccccch-hhHHHHHHHhc--ccCeEEEEeccCCCCCHHHHHHHHH
Q 001825 902 LAKVGWFRVVLDEAQSIKNH-RTQVARACWGL--RAKRRWCLSGTPIQNAIDDLYSYFR 957 (1009)
Q Consensus 902 L~~i~W~RVILDEAH~IKN~-~Sq~skAl~~L--~Ak~RW~LTGTPIQNsL~DLySLLr 957 (1009)
+.. -..||+||.|+|... +.-+++-+.-+ +.-+-++|||| +.| ..++-..+.
T Consensus 227 ~~~--i~~ViFDEvHyi~D~eRG~VWEE~Ii~lP~~v~~v~LSAT-v~N-~~EF~~Wi~ 281 (1041)
T COG4581 227 LRD--IEWVVFDEVHYIGDRERGVVWEEVIILLPDHVRFVFLSAT-VPN-AEEFAEWIQ 281 (1041)
T ss_pred ccc--cceEEEEeeeeccccccchhHHHHHHhcCCCCcEEEEeCC-CCC-HHHHHHHHH
Confidence 222 346999999999764 45555554444 33477999999 333 344444343
No 99
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=95.55 E-value=0.15 Score=64.83 Aligned_cols=55 Identities=16% Similarity=0.209 Sum_probs=30.7
Q ss_pred cEEEEeChhh-HHHHHHHHHHHhcCCCCcEEEE-EcCCCCCCCcccccCCCEEEEehhhhhc
Q 001825 779 GTLVVCPTSV-LRQWAEELRNKVTSKGSLSVLV-YHGSSRTKDPCELAKFDVVITTYSIVSM 838 (1009)
Q Consensus 779 ~TLIVcP~SL-L~QW~~EI~K~~~~~~~LkVlV-y~Gs~R~k~~~~LakyDVVITTYstLs~ 838 (1009)
.+||++|.-+ ..|-.+.+.+.+.......|-. +.+..... .+-.|+++|...+.+
T Consensus 50 ~ilvlqPrR~aA~qia~rva~~l~~~~g~~VGy~vr~~~~~~-----~~t~I~v~T~G~Llr 106 (812)
T PRK11664 50 KIIMLEPRRLAARNVAQRLAEQLGEKPGETVGYRMRAESKVG-----PNTRLEVVTEGILTR 106 (812)
T ss_pred eEEEECChHHHHHHHHHHHHHHhCcccCceEEEEecCccccC-----CCCcEEEEChhHHHH
Confidence 5799999875 4777777766554222222221 22222111 123688888888754
No 100
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]
Probab=95.41 E-value=0.057 Score=67.77 Aligned_cols=99 Identities=15% Similarity=0.171 Sum_probs=65.6
Q ss_pred cCCCchhHHHHHHHHHhccccCCCCcccEEEcCCCchHHHHHHHHHHHcCCCCCCCcchhhhhhhhcccccccccccccc
Q 001825 664 AVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGIQVNG 743 (1009)
Q Consensus 664 kv~LrPHQkegV~WMlqrE~s~~~~rGGILADEMGLGKTVqaIALIl~~r~~~~~~~~~~k~~~e~l~~de~~d~~~~~~ 743 (1009)
.+.|-.+|++|+..|.+- -..++|--.-.|||+.|=..|+....
T Consensus 295 pFelD~FQk~Ai~~lerg-------~SVFVAAHTSAGKTvVAEYAialaq~----------------------------- 338 (1248)
T KOG0947|consen 295 PFELDTFQKEAIYHLERG-------DSVFVAAHTSAGKTVVAEYAIALAQK----------------------------- 338 (1248)
T ss_pred CCCccHHHHHHHHHHHcC-------CeEEEEecCCCCcchHHHHHHHHHHh-----------------------------
Confidence 456778999999888742 23678888999999998655543210
Q ss_pred ccccccccccccccCCCCCCccchhhhhhcCCCCCcEEEEeCh-hhHHHHHHHHHHHhcCCCCcEEEEEcCCCCCCCccc
Q 001825 744 LDLVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPT-SVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCE 822 (1009)
Q Consensus 744 ~~~~k~~~~~C~~~s~~~s~~s~~~~~q~~~rpa~~TLIVcP~-SLL~QW~~EI~K~~~~~~~LkVlVy~Gs~R~k~~~~ 822 (1009)
+| .+++--.|- .|-.|=-++|+..|.. .. +++|+-..
T Consensus 339 ---------h~-----------------------TR~iYTSPIKALSNQKfRDFk~tF~D---vg--LlTGDvqi----- 376 (1248)
T KOG0947|consen 339 ---------HM-----------------------TRTIYTSPIKALSNQKFRDFKETFGD---VG--LLTGDVQI----- 376 (1248)
T ss_pred ---------hc-----------------------cceEecchhhhhccchHHHHHHhccc---cc--eeecceee-----
Confidence 00 134445554 3557778888887762 22 56665332
Q ss_pred ccCCCEEEEehhhhhccc
Q 001825 823 LAKFDVVITTYSIVSMEV 840 (1009)
Q Consensus 823 LakyDVVITTYstLs~ev 840 (1009)
-..+.++|+|-++|+..+
T Consensus 377 nPeAsCLIMTTEILRsML 394 (1248)
T KOG0947|consen 377 NPEASCLIMTTEILRSML 394 (1248)
T ss_pred CCCcceEeehHHHHHHHH
Confidence 246789999999997644
No 101
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=95.38 E-value=0.069 Score=67.04 Aligned_cols=44 Identities=30% Similarity=0.289 Sum_probs=35.9
Q ss_pred CCCchhHHHHHHHHHhccccCCCCcccEEEcCCCchHHHHHHHHHHH
Q 001825 665 VPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILK 711 (1009)
Q Consensus 665 v~LrPHQkegV~WMlqrE~s~~~~rGGILADEMGLGKTVqaIALIl~ 711 (1009)
...++.|..++.+..+...... =.+|-...|-|||..++++...
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~---~~vl~aPTG~GKT~asl~~a~~ 237 (733)
T COG1203 194 HEGYELQEKALELILRLEKRSL---LVVLEAPTGYGKTEASLILALA 237 (733)
T ss_pred chhhHHHHHHHHHHHhcccccc---cEEEEeCCCCChHHHHHHHHHH
Confidence 4468999999999998776541 3789999999999998887765
No 102
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=95.34 E-value=0.14 Score=58.37 Aligned_cols=46 Identities=22% Similarity=0.058 Sum_probs=32.5
Q ss_pred ccCCCchhHHHHHHHHHhccccCCCCcccEEEcCCCchHHHHHHHHHHH
Q 001825 663 LAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILK 711 (1009)
Q Consensus 663 Lkv~LrPHQkegV~WMlqrE~s~~~~rGGILADEMGLGKTVqaIALIl~ 711 (1009)
...+|-|+|+.+-.-+++...... --|+=--.|.|||-++...|..
T Consensus 94 W~G~Ls~~Q~~as~~l~q~i~~k~---~~lv~AV~GaGKTEMif~~i~~ 139 (441)
T COG4098 94 WKGTLSPGQKKASNQLVQYIKQKE---DTLVWAVTGAGKTEMIFQGIEQ 139 (441)
T ss_pred eccccChhHHHHHHHHHHHHHhcC---cEEEEEecCCCchhhhHHHHHH
Confidence 356799999999887776655432 2355556799999887776643
No 103
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=95.26 E-value=0.062 Score=59.77 Aligned_cols=101 Identities=18% Similarity=0.121 Sum_probs=61.1
Q ss_pred cCCCchhHHHHHHHHHhccccCCCCcccEEEcCCCchHHHHHHHHHHHcCCCCCCCcchhhhhhhhcccccccccccccc
Q 001825 664 AVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGIQVNG 743 (1009)
Q Consensus 664 kv~LrPHQkegV~WMlqrE~s~~~~rGGILADEMGLGKTVqaIALIl~~r~~~~~~~~~~k~~~e~l~~de~~d~~~~~~ 743 (1009)
...+++-|+.|+--|. .|-|.=-..|=|||+++..+....
T Consensus 75 g~~p~~vQll~~l~L~---------~G~laEm~TGEGKTli~~l~a~~~------------------------------- 114 (266)
T PF07517_consen 75 GLRPYDVQLLGALALH---------KGRLAEMKTGEGKTLIAALPAALN------------------------------- 114 (266)
T ss_dssp S----HHHHHHHHHHH---------TTSEEEESTTSHHHHHHHHHHHHH-------------------------------
T ss_pred CCcccHHHHhhhhhcc---------cceeEEecCCCCcHHHHHHHHHHH-------------------------------
Confidence 4456677888886663 566777789999999875333221
Q ss_pred ccccccccccccccCCCCCCccchhhhhhcCCCCCcEEEEeChhhH----HHHHHHHHHHhcCCCCcEEEEEcCCCCCCC
Q 001825 744 LDLVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTSVL----RQWAEELRNKVTSKGSLSVLVYHGSSRTKD 819 (1009)
Q Consensus 744 ~~~~k~~~~~C~~~s~~~s~~s~~~~~q~~~rpa~~TLIVcP~SLL----~QW~~EI~K~~~~~~~LkVlVy~Gs~R~k~ 819 (1009)
....+++-||+.+..| .+|...+-+++. +.+-+.........
T Consensus 115 ------------------------------AL~G~~V~vvT~NdyLA~RD~~~~~~~y~~LG----lsv~~~~~~~~~~~ 160 (266)
T PF07517_consen 115 ------------------------------ALQGKGVHVVTSNDYLAKRDAEEMRPFYEFLG----LSVGIITSDMSSEE 160 (266)
T ss_dssp ------------------------------HTTSS-EEEEESSHHHHHHHHHHHHHHHHHTT------EEEEETTTEHHH
T ss_pred ------------------------------HHhcCCcEEEeccHHHhhccHHHHHHHHHHhh----hccccCccccCHHH
Confidence 0012357788887655 578888888776 77776666543322
Q ss_pred cccccCCCEEEEehhhhhc
Q 001825 820 PCELAKFDVVITTYSIVSM 838 (1009)
Q Consensus 820 ~~~LakyDVVITTYstLs~ 838 (1009)
....-..||+-+|-..+..
T Consensus 161 r~~~Y~~dI~Y~t~~~~~f 179 (266)
T PF07517_consen 161 RREAYAADIVYGTNSEFGF 179 (266)
T ss_dssp HHHHHHSSEEEEEHHHHHH
T ss_pred HHHHHhCcccccccchhhH
Confidence 2334567888888777654
No 104
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=94.97 E-value=0.34 Score=61.66 Aligned_cols=23 Identities=22% Similarity=0.313 Sum_probs=18.5
Q ss_pred cccEEEcCCCchHHHHHHHHHHH
Q 001825 689 SGGILADDQGLGKTISTIALILK 711 (1009)
Q Consensus 689 rGGILADEMGLGKTVqaIALIl~ 711 (1009)
...|+.-+.|.|||.+..-.|+.
T Consensus 18 ~~vIi~a~TGSGKTT~vpl~lL~ 40 (819)
T TIGR01970 18 PQVVLEAPPGAGKSTAVPLALLD 40 (819)
T ss_pred CcEEEECCCCCCHHHHHHHHHHH
Confidence 45789999999999998766643
No 105
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=94.89 E-value=0.12 Score=63.10 Aligned_cols=163 Identities=16% Similarity=0.190 Sum_probs=106.1
Q ss_pred CCchhHHHHHHHHHhccccCCCCcccEEEcCCCchHHHHHH--HHHHHcCCCCCCCcchhhhhhhhcccccccccccccc
Q 001825 666 PLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTI--ALILKERPPSFRTEDDNKRQLETLNLDEEDNGIQVNG 743 (1009)
Q Consensus 666 ~LrPHQkegV~WMlqrE~s~~~~rGGILADEMGLGKTVqaI--ALIl~~r~~~~~~~~~~k~~~e~l~~de~~d~~~~~~ 743 (1009)
..||-|.+.+..++.. +..|.--..|-||++.-- |++
T Consensus 17 ~FR~gQ~evI~~~l~g-------~d~lvvmPTGgGKSlCyQiPAll---------------------------------- 55 (590)
T COG0514 17 SFRPGQQEIIDALLSG-------KDTLVVMPTGGGKSLCYQIPALL---------------------------------- 55 (590)
T ss_pred ccCCCHHHHHHHHHcC-------CcEEEEccCCCCcchHhhhHHHh----------------------------------
Confidence 3689999999999865 446777788999997431 111
Q ss_pred ccccccccccccccCCCCCCccchhhhhhcCCCCCcEEEEeCh-hhHHHHHHHHHHHhcCCCCcEEEEEcCCCCCCC---
Q 001825 744 LDLVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPT-SVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKD--- 819 (1009)
Q Consensus 744 ~~~~k~~~~~C~~~s~~~s~~s~~~~~q~~~rpa~~TLIVcP~-SLL~QW~~EI~K~~~~~~~LkVlVy~Gs~R~k~--- 819 (1009)
..+.||||.|. +|+..=.+.++.. .+.+..++..-....
T Consensus 56 --------------------------------~~G~TLVVSPLiSLM~DQV~~l~~~-----Gi~A~~lnS~l~~~e~~~ 98 (590)
T COG0514 56 --------------------------------LEGLTLVVSPLISLMKDQVDQLEAA-----GIRAAYLNSTLSREERQQ 98 (590)
T ss_pred --------------------------------cCCCEEEECchHHHHHHHHHHHHHc-----CceeehhhcccCHHHHHH
Confidence 13579999998 5776556666543 256665555522211
Q ss_pred ---cccccCCCEEEEehhhhhcccCCCCCCCchhHHHHhhhcCCCCCCcccccccccCCCCCCcccccccCCCCCCcchh
Q 001825 820 ---PCELAKFDVVITTYSIVSMEVPKQPLGDKEDEEEKMKIEGEDLPPMYCSSSKKRKCPPSSDRKGSKQKKGPDGLLLD 896 (1009)
Q Consensus 820 ---~~~LakyDVVITTYstLs~ev~k~~l~d~dde~ek~~~e~~~~~~~~~ssskkRK~~~~s~kk~s~~kk~~d~~~~d 896 (1009)
......++++..+-+.+....
T Consensus 99 v~~~l~~g~~klLyisPErl~~~~-------------------------------------------------------- 122 (590)
T COG0514 99 VLNQLKSGQLKLLYISPERLMSPR-------------------------------------------------------- 122 (590)
T ss_pred HHHHHhcCceeEEEECchhhcChH--------------------------------------------------------
Confidence 111235778877777764321
Q ss_pred hccCcccccceeEEEEcccccccch-------hhHHHHHHHhcccCeEEEEeccCCCCCHHHHHHHHHhhCCCC
Q 001825 897 IVAGPLAKVGWFRVVLDEAQSIKNH-------RTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDP 963 (1009)
Q Consensus 897 ~~~s~L~~i~W~RVILDEAH~IKN~-------~Sq~skAl~~L~Ak~RW~LTGTPIQNsL~DLySLLrFLrp~p 963 (1009)
....|......+++|||||.+-.. -.+.......+...-+++||||=-+.-..|+...|..-.+..
T Consensus 123 -f~~~L~~~~i~l~vIDEAHCiSqWGhdFRP~Y~~lg~l~~~~~~~p~~AlTATA~~~v~~DI~~~L~l~~~~~ 195 (590)
T COG0514 123 -FLELLKRLPISLVAIDEAHCISQWGHDFRPDYRRLGRLRAGLPNPPVLALTATATPRVRDDIREQLGLQDANI 195 (590)
T ss_pred -HHHHHHhCCCceEEechHHHHhhcCCccCHhHHHHHHHHhhCCCCCEEEEeCCCChHHHHHHHHHhcCCCcce
Confidence 011244677889999999998543 233344444445557899999998888999988887555433
No 106
>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification]
Probab=94.84 E-value=0.17 Score=61.79 Aligned_cols=79 Identities=24% Similarity=0.389 Sum_probs=58.7
Q ss_pred CCchhHHHHHHHHHhccccCCCCcccEEEcCCCchHHHHHHHHHHHcCCCCCCCcchhhhhhhhcccccccccccccccc
Q 001825 666 PLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGIQVNGLD 745 (1009)
Q Consensus 666 ~LrPHQkegV~WMlqrE~s~~~~rGGILADEMGLGKTVqaIALIl~~r~~~~~~~~~~k~~~e~l~~de~~d~~~~~~~~ 745 (1009)
+|-.-|..||...+++.- .||--.+|.|||++.-+.+...-
T Consensus 410 kLN~SQ~~AV~~VL~rpl-------sLIQGPPGTGKTvtsa~IVyhl~-------------------------------- 450 (935)
T KOG1802|consen 410 KLNASQSNAVKHVLQRPL-------SLIQGPPGTGKTVTSATIVYHLA-------------------------------- 450 (935)
T ss_pred hhchHHHHHHHHHHcCCc-------eeeecCCCCCceehhHHHHHHHH--------------------------------
Confidence 377899999999998743 46777899999998766653310
Q ss_pred ccccccccccccCCCCCCccchhhhhhcCCCCCcEEEEeChhh-HHHHHHHHHHHhcCCCCcEEEEEcCCCC
Q 001825 746 LVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTSV-LRQWAEELRNKVTSKGSLSVLVYHGSSR 816 (1009)
Q Consensus 746 ~~k~~~~~C~~~s~~~s~~s~~~~~q~~~rpa~~TLIVcP~SL-L~QW~~EI~K~~~~~~~LkVlVy~Gs~R 816 (1009)
.+..+++||++|.++ ++|-++-|++- .|+|+.+-...|
T Consensus 451 ----------------------------~~~~~~VLvcApSNiAVDqLaeKIh~t-----gLKVvRl~aksR 489 (935)
T KOG1802|consen 451 ----------------------------RQHAGPVLVCAPSNIAVDQLAEKIHKT-----GLKVVRLCAKSR 489 (935)
T ss_pred ----------------------------HhcCCceEEEcccchhHHHHHHHHHhc-----CceEeeeehhhh
Confidence 012468999999985 69999999863 388887766544
No 107
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=94.74 E-value=0.11 Score=61.72 Aligned_cols=120 Identities=20% Similarity=0.208 Sum_probs=74.1
Q ss_pred CCCCcEEEEeChh-h---HHHHHHHHHHHhcCCCCcEEEEEcCCCCCCCc--ccccCCCEEEEehhhhhcccCCCCCCCc
Q 001825 775 RPAAGTLVVCPTS-V---LRQWAEELRNKVTSKGSLSVLVYHGSSRTKDP--CELAKFDVVITTYSIVSMEVPKQPLGDK 848 (1009)
Q Consensus 775 rpa~~TLIVcP~S-L---L~QW~~EI~K~~~~~~~LkVlVy~Gs~R~k~~--~~LakyDVVITTYstLs~ev~k~~l~d~ 848 (1009)
.+.-++||+||.- | +.+-.+.|..|+. +.+.+.-|.-..+.. ..-...||||.|-..|.-++...
T Consensus 250 ~~~TRVLVL~PTRELaiQv~sV~~qlaqFt~----I~~~L~vGGL~lk~QE~~LRs~PDIVIATPGRlIDHlrNs----- 320 (691)
T KOG0338|consen 250 VAATRVLVLVPTRELAIQVHSVTKQLAQFTD----ITVGLAVGGLDLKAQEAVLRSRPDIVIATPGRLIDHLRNS----- 320 (691)
T ss_pred CcceeEEEEeccHHHHHHHHHHHHHHHhhcc----ceeeeeecCccHHHHHHHHhhCCCEEEecchhHHHHhccC-----
Confidence 3455799999985 3 3556667777765 888877776544322 23357899999998885443210
Q ss_pred hhHHHHhhhcCCCCCCcccccccccCCCCCCcccccccCCCCCCcchhhccCcccccceeEEEEcccccccc--hhhHHH
Q 001825 849 EDEEEKMKIEGEDLPPMYCSSSKKRKCPPSSDRKGSKQKKGPDGLLLDIVAGPLAKVGWFRVVLDEAQSIKN--HRTQVA 926 (1009)
Q Consensus 849 dde~ek~~~e~~~~~~~~~ssskkRK~~~~s~kk~s~~kk~~d~~~~d~~~s~L~~i~W~RVILDEAH~IKN--~~Sq~s 926 (1009)
+ .+.--....+|+|||.++-. ...+..
T Consensus 321 ---------------------------~------------------------sf~ldsiEVLvlDEADRMLeegFademn 349 (691)
T KOG0338|consen 321 ---------------------------P------------------------SFNLDSIEVLVLDEADRMLEEGFADEMN 349 (691)
T ss_pred ---------------------------C------------------------CccccceeEEEechHHHHHHHHHHHHHH
Confidence 0 01112234699999998854 234444
Q ss_pred HHHHhc-ccCeEEEEeccCCCCCHHHHHHH
Q 001825 927 RACWGL-RAKRRWCLSGTPIQNAIDDLYSY 955 (1009)
Q Consensus 927 kAl~~L-~Ak~RW~LTGTPIQNsL~DLySL 955 (1009)
..++.+ +.+..++.|||. ...+.||.++
T Consensus 350 Eii~lcpk~RQTmLFSATM-teeVkdL~sl 378 (691)
T KOG0338|consen 350 EIIRLCPKNRQTMLFSATM-TEEVKDLASL 378 (691)
T ss_pred HHHHhccccccceeehhhh-HHHHHHHHHh
Confidence 444433 334458889994 3457777664
No 108
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=94.72 E-value=0.24 Score=59.68 Aligned_cols=58 Identities=24% Similarity=0.322 Sum_probs=43.4
Q ss_pred CcEEEEeChh-hHHHHHHHHHHHhcCCCCcEEEEEcCCCCCCCc------ccccCCCEEEEehhhh
Q 001825 778 AGTLVVCPTS-VLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDP------CELAKFDVVITTYSIV 836 (1009)
Q Consensus 778 ~~TLIVcP~S-LL~QW~~EI~K~~~~~~~LkVlVy~Gs~R~k~~------~~LakyDVVITTYstL 836 (1009)
+..|.+||.. |..|=.++|+..+. +-.+++-+--|..|.+.. ..-.++|||+-||+-+
T Consensus 262 ~KmlfLvPLVALANQKy~dF~~rYs-~LglkvairVG~srIk~~~~pv~~~t~~dADIIVGTYEGi 326 (830)
T COG1202 262 KKMLFLVPLVALANQKYEDFKERYS-KLGLKVAIRVGMSRIKTREEPVVVDTSPDADIIVGTYEGI 326 (830)
T ss_pred CeEEEEehhHHhhcchHHHHHHHhh-cccceEEEEechhhhcccCCccccCCCCCCcEEEeechhH
Confidence 4689999985 66888889988875 445777777777665543 2346899999999865
No 109
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=94.47 E-value=0.094 Score=62.24 Aligned_cols=61 Identities=23% Similarity=0.260 Sum_probs=41.0
Q ss_pred CcEEEEeChh-hHHHHHHHHHHHhcCCCCcEEEEEcCCCC-CCCcccccCCCEEEEehhhhhc
Q 001825 778 AGTLVVCPTS-VLRQWAEELRNKVTSKGSLSVLVYHGSSR-TKDPCELAKFDVVITTYSIVSM 838 (1009)
Q Consensus 778 ~~TLIVcP~S-LL~QW~~EI~K~~~~~~~LkVlVy~Gs~R-~k~~~~LakyDVVITTYstLs~ 838 (1009)
...||++|+. |+.|-.+|.+|+......-.+.+|-|.+- ......-..+||+++|-..|..
T Consensus 153 P~~lIlapTReL~~Qi~nea~k~~~~s~~~~~~~ygg~~~~~q~~~~~~gcdIlvaTpGrL~d 215 (482)
T KOG0335|consen 153 PRALILAPTRELVDQIYNEARKFSYLSGMKSVVVYGGTDLGAQLRFIKRGCDILVATPGRLKD 215 (482)
T ss_pred CceEEEeCcHHHhhHHHHHHHhhcccccceeeeeeCCcchhhhhhhhccCccEEEecCchhhh
Confidence 3579999996 89999999999876433334444544221 1122334579999999888743
No 110
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=94.03 E-value=0.15 Score=61.17 Aligned_cols=62 Identities=18% Similarity=0.257 Sum_probs=40.9
Q ss_pred cEEEEeChh-hHHHHHHHHHHHhcCCCCcEE-EEEcCCCCCCCcccccCCCEEEEehhhhhcccC
Q 001825 779 GTLVVCPTS-VLRQWAEELRNKVTSKGSLSV-LVYHGSSRTKDPCELAKFDVVITTYSIVSMEVP 841 (1009)
Q Consensus 779 ~TLIVcP~S-LL~QW~~EI~K~~~~~~~LkV-lVy~Gs~R~k~~~~LakyDVVITTYstLs~ev~ 841 (1009)
+.|||.|.- |..|--+-+.+.-. ...++. +++-|..-.-....+....|+|+|-..|.+++.
T Consensus 143 GalIISPTRELA~QtFevL~kvgk-~h~fSaGLiiGG~~~k~E~eRi~~mNILVCTPGRLLQHmd 206 (758)
T KOG0343|consen 143 GALIISPTRELALQTFEVLNKVGK-HHDFSAGLIIGGKDVKFELERISQMNILVCTPGRLLQHMD 206 (758)
T ss_pred eeEEecchHHHHHHHHHHHHHHhh-ccccccceeecCchhHHHHHhhhcCCeEEechHHHHHHhh
Confidence 679999986 66777777665422 223433 344444433345567789999999999977653
No 111
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=93.94 E-value=0.16 Score=63.86 Aligned_cols=102 Identities=20% Similarity=0.153 Sum_probs=66.4
Q ss_pred cCCCchhHHHHHHHHHhccccCCCCcccEEEcCCCchHHHHHHHHHHHcCCCCCCCcchhhhhhhhcccccccccccccc
Q 001825 664 AVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGIQVNG 743 (1009)
Q Consensus 664 kv~LrPHQkegV~WMlqrE~s~~~~rGGILADEMGLGKTVqaIALIl~~r~~~~~~~~~~k~~~e~l~~de~~d~~~~~~ 743 (1009)
....++-|+.|.--|. .|-|.=-..|-|||+++...+...-
T Consensus 78 g~~~~dvQlig~l~l~---------~G~iaEm~TGEGKTLvA~l~a~l~a------------------------------ 118 (796)
T PRK12906 78 GLRPFDVQIIGGIVLH---------EGNIAEMKTGEGKTLTATLPVYLNA------------------------------ 118 (796)
T ss_pred CCCCchhHHHHHHHHh---------cCCcccccCCCCCcHHHHHHHHHHH------------------------------
Confidence 4456677999887653 4666667889999999764443210
Q ss_pred ccccccccccccccCCCCCCccchhhhhhcCCCCCcEEEEeChhhH-H---HHHHHHHHHhcCCCCcEEEEEcCCCCCCC
Q 001825 744 LDLVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTSVL-R---QWAEELRNKVTSKGSLSVLVYHGSSRTKD 819 (1009)
Q Consensus 744 ~~~~k~~~~~C~~~s~~~s~~s~~~~~q~~~rpa~~TLIVcP~SLL-~---QW~~EI~K~~~~~~~LkVlVy~Gs~R~k~ 819 (1009)
.....+-||+|+-.| . .|...+-+++. ++|-+..+......
T Consensus 119 -------------------------------l~G~~v~vvT~neyLA~Rd~e~~~~~~~~LG----l~vg~i~~~~~~~~ 163 (796)
T PRK12906 119 -------------------------------LTGKGVHVVTVNEYLSSRDATEMGELYRWLG----LTVGLNLNSMSPDE 163 (796)
T ss_pred -------------------------------HcCCCeEEEeccHHHHHhhHHHHHHHHHhcC----CeEEEeCCCCCHHH
Confidence 012357899999865 3 45555555554 88888877654444
Q ss_pred cccccCCCEEEEehhhhhcc
Q 001825 820 PCELAKFDVVITTYSIVSME 839 (1009)
Q Consensus 820 ~~~LakyDVVITTYstLs~e 839 (1009)
....-.+||+-+|-..|.-+
T Consensus 164 r~~~y~~dI~Y~t~~e~gfD 183 (796)
T PRK12906 164 KRAAYNCDITYSTNSELGFD 183 (796)
T ss_pred HHHHhcCCCeecCCcccccc
Confidence 44556789888877666543
No 112
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=93.81 E-value=0.18 Score=54.23 Aligned_cols=57 Identities=18% Similarity=0.202 Sum_probs=27.0
Q ss_pred cceeEEEEcccccccchhhHHHHHHHhcccCeEEEEeccCCCCCHHH-----HHHHHHhhCCCC
Q 001825 905 VGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDD-----LYSYFRFLRYDP 963 (1009)
Q Consensus 905 i~W~RVILDEAH~IKN~~Sq~skAl~~L~Ak~RW~LTGTPIQNsL~D-----LySLLrFLrp~p 963 (1009)
+.+..|||||||++... +.-..+-++....+++++|=|.|..+.. |-.+++.+...+
T Consensus 118 ~~~~~iIvDEaQN~t~~--~~k~ilTR~g~~skii~~GD~~Q~D~~~~~~nGl~~~~~~~~~~~ 179 (205)
T PF02562_consen 118 FDNAFIIVDEAQNLTPE--ELKMILTRIGEGSKIIITGDPSQIDLPLDYNNGLTYAIERLKGEP 179 (205)
T ss_dssp B-SEEEEE-SGGG--HH--HHHHHHTTB-TT-EEEEEE--------------THHHHHHTTT-T
T ss_pred ccceEEEEecccCCCHH--HHHHHHcccCCCcEEEEecCceeecCCCCCCchHHHHHHHhcCCC
Confidence 34578999999987542 3334456677789999999999876542 233455555433
No 113
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=93.36 E-value=0.17 Score=63.11 Aligned_cols=35 Identities=17% Similarity=0.068 Sum_probs=29.6
Q ss_pred EEEEcccccccchhhHHHHHHHhcccCeEEEEeccC
Q 001825 909 RVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTP 944 (1009)
Q Consensus 909 RVILDEAH~IKN~~Sq~skAl~~L~Ak~RW~LTGTP 944 (1009)
.||+||-|++... .+++.++..|.+...+=..||-
T Consensus 208 IvIvDEPh~f~~~-~k~~~~i~~l~pl~ilRfgATf 242 (985)
T COG3587 208 IVIVDEPHRFLGD-DKTYGAIKQLNPLLILRFGATF 242 (985)
T ss_pred EEEecChhhcccc-hHHHHHHHhhCceEEEEecccc
Confidence 5999999999876 8899999999888777677773
No 114
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=93.20 E-value=0.51 Score=56.13 Aligned_cols=120 Identities=23% Similarity=0.310 Sum_probs=71.5
Q ss_pred CcEEEEeChh-hHHHHHHHHHHHhcCCCCcEEE-EEcCCCCCCCccccc-CCCEEEEehhhhhcccCCCCCCCchhHHHH
Q 001825 778 AGTLVVCPTS-VLRQWAEELRNKVTSKGSLSVL-VYHGSSRTKDPCELA-KFDVVITTYSIVSMEVPKQPLGDKEDEEEK 854 (1009)
Q Consensus 778 ~~TLIVcP~S-LL~QW~~EI~K~~~~~~~LkVl-Vy~Gs~R~k~~~~La-kyDVVITTYstLs~ev~k~~l~d~dde~ek 854 (1009)
-.+|||||.- |..|-..|.++.+.......|- +.-|.++......+. ...++|.|-..|.-+...
T Consensus 155 ~~vlIi~PTRELA~Q~~~eak~Ll~~h~~~~v~~viGG~~~~~e~~kl~k~~niliATPGRLlDHlqN------------ 222 (543)
T KOG0342|consen 155 TGVLIICPTRELAMQIFAEAKELLKYHESITVGIVIGGNNFSVEADKLVKGCNILIATPGRLLDHLQN------------ 222 (543)
T ss_pred eeEEEecccHHHHHHHHHHHHHHHhhCCCcceEEEeCCccchHHHHHhhccccEEEeCCchHHhHhhc------------
Confidence 3689999997 6688888887766533244444 455555554444444 567899998887433211
Q ss_pred hhhcCCCCCCcccccccccCCCCCCcccccccCCCCCCcchhhccCcccccceeEEEEcccccccc--hhhHHHHHHHhc
Q 001825 855 MKIEGEDLPPMYCSSSKKRKCPPSSDRKGSKQKKGPDGLLLDIVAGPLAKVGWFRVVLDEAQSIKN--HRTQVARACWGL 932 (1009)
Q Consensus 855 ~~~e~~~~~~~~~ssskkRK~~~~s~kk~s~~kk~~d~~~~d~~~s~L~~i~W~RVILDEAH~IKN--~~Sq~skAl~~L 932 (1009)
. ...+.+ .-..+|+|||.+|-. ..--+-+.+..|
T Consensus 223 -----t--------------------------------------~~f~~r-~~k~lvlDEADrlLd~GF~~di~~Ii~~l 258 (543)
T KOG0342|consen 223 -----T--------------------------------------SGFLFR-NLKCLVLDEADRLLDIGFEEDVEQIIKIL 258 (543)
T ss_pred -----C--------------------------------------Ccchhh-ccceeEeecchhhhhcccHHHHHHHHHhc
Confidence 0 011111 126799999999854 333334444445
Q ss_pred -ccCeEEEEeccCCCCCHHHHHH
Q 001825 933 -RAKRRWCLSGTPIQNAIDDLYS 954 (1009)
Q Consensus 933 -~Ak~RW~LTGTPIQNsL~DLyS 954 (1009)
+-+..++.|||- ...+.+|..
T Consensus 259 pk~rqt~LFSAT~-~~kV~~l~~ 280 (543)
T KOG0342|consen 259 PKQRQTLLFSATQ-PSKVKDLAR 280 (543)
T ss_pred cccceeeEeeCCC-cHHHHHHHH
Confidence 344568889993 445666654
No 115
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=92.90 E-value=0.41 Score=60.81 Aligned_cols=58 Identities=19% Similarity=0.252 Sum_probs=40.8
Q ss_pred CcEEEEeChhhH----HHHHHHHHHHhcCCCCcEEEEEcCCCCCCCcccccCCCEEEEehhhhhcc
Q 001825 778 AGTLVVCPTSVL----RQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCELAKFDVVITTYSIVSME 839 (1009)
Q Consensus 778 ~~TLIVcP~SLL----~QW~~EI~K~~~~~~~LkVlVy~Gs~R~k~~~~LakyDVVITTYstLs~e 839 (1009)
+++-||+++--| ..|...+.+|+. +.|-+..+..........-.+||+-+|-..|.-+
T Consensus 127 kgVhVVTvNdYLA~RDae~m~~vy~~LG----Ltvg~i~~~~~~~err~aY~~DItYgTn~e~gFD 188 (939)
T PRK12902 127 KGVHVVTVNDYLARRDAEWMGQVHRFLG----LSVGLIQQDMSPEERKKNYACDITYATNSELGFD 188 (939)
T ss_pred CCeEEEeCCHHHHHhHHHHHHHHHHHhC----CeEEEECCCCChHHHHHhcCCCeEEecCCccccc
Confidence 467888888644 689999999987 8887765544333334455789988887776543
No 116
>PRK10536 hypothetical protein; Provisional
Probab=92.82 E-value=0.56 Score=52.18 Aligned_cols=40 Identities=25% Similarity=0.213 Sum_probs=32.2
Q ss_pred eEEEEcccccccchhhHHHHHHHhcccCeEEEEeccCCCCCH
Q 001825 908 FRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAI 949 (1009)
Q Consensus 908 ~RVILDEAH~IKN~~Sq~skAl~~L~Ak~RW~LTGTPIQNsL 949 (1009)
..|||||||++.- .+....+.++....+++++|-|-|..+
T Consensus 178 ~~vIvDEaqn~~~--~~~k~~ltR~g~~sk~v~~GD~~QiD~ 217 (262)
T PRK10536 178 AVVILDEAQNVTA--AQMKMFLTRLGENVTVIVNGDITQCDL 217 (262)
T ss_pred CEEEEechhcCCH--HHHHHHHhhcCCCCEEEEeCChhhccC
Confidence 5799999999854 455556678889999999999987553
No 117
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=92.73 E-value=0.37 Score=55.86 Aligned_cols=111 Identities=23% Similarity=0.175 Sum_probs=71.4
Q ss_pred cEEEEeChh-hHHHHHHHHHHHhcCCCCcEEEEEcCCCCCCC-c-ccccCCCEEEEehhhhhcccCCCCCCCchhHHHHh
Q 001825 779 GTLVVCPTS-VLRQWAEELRNKVTSKGSLSVLVYHGSSRTKD-P-CELAKFDVVITTYSIVSMEVPKQPLGDKEDEEEKM 855 (1009)
Q Consensus 779 ~TLIVcP~S-LL~QW~~EI~K~~~~~~~LkVlVy~Gs~R~k~-~-~~LakyDVVITTYstLs~ev~k~~l~d~dde~ek~ 855 (1009)
..||++|.- |..|-.+.+... ...-.+++.++.|...... . ....+.+|+|.|-..+..++.. .
T Consensus 131 ~~lVLtPtRELA~QI~e~fe~L-g~~iglr~~~lvGG~~m~~q~~~L~kkPhilVaTPGrL~dhl~~------------T 197 (476)
T KOG0330|consen 131 FALVLTPTRELAQQIAEQFEAL-GSGIGLRVAVLVGGMDMMLQANQLSKKPHILVATPGRLWDHLEN------------T 197 (476)
T ss_pred eEEEecCcHHHHHHHHHHHHHh-ccccCeEEEEEecCchHHHHHHHhhcCCCEEEeCcHHHHHHHHh------------c
Confidence 369999986 667777777665 3344688888887754321 1 2234678999999888654311 0
Q ss_pred hhcCCCCCCcccccccccCCCCCCcccccccCCCCCCcchhhccCcccccceeEEEEcccccccch--hhHHHHHHHhcc
Q 001825 856 KIEGEDLPPMYCSSSKKRKCPPSSDRKGSKQKKGPDGLLLDIVAGPLAKVGWFRVVLDEAQSIKNH--RTQVARACWGLR 933 (1009)
Q Consensus 856 ~~e~~~~~~~~~ssskkRK~~~~s~kk~s~~kk~~d~~~~d~~~s~L~~i~W~RVILDEAH~IKN~--~Sq~skAl~~L~ 933 (1009)
+. -.|.+ ...+|+|||.++-+. ...+-+.+..+.
T Consensus 198 --------------------------------kg----------f~le~--lk~LVlDEADrlLd~dF~~~ld~ILk~ip 233 (476)
T KOG0330|consen 198 --------------------------------KG----------FSLEQ--LKFLVLDEADRLLDMDFEEELDYILKVIP 233 (476)
T ss_pred --------------------------------cC----------ccHHH--hHHHhhchHHhhhhhhhHHHHHHHHHhcC
Confidence 00 00222 235899999999874 355667777787
Q ss_pred cCeE-EEEeccCCC
Q 001825 934 AKRR-WCLSGTPIQ 946 (1009)
Q Consensus 934 Ak~R-W~LTGTPIQ 946 (1009)
.+++ ++.|||...
T Consensus 234 ~erqt~LfsATMt~ 247 (476)
T KOG0330|consen 234 RERQTFLFSATMTK 247 (476)
T ss_pred ccceEEEEEeecch
Confidence 6655 566888654
No 118
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=92.55 E-value=0.54 Score=54.81 Aligned_cols=120 Identities=23% Similarity=0.336 Sum_probs=85.0
Q ss_pred CCCCcEEEEeChh-hHHHHHHHHHHHhcCCCCcEEEEEcCCCCCCCccccc-CCCEEEEehhhhhcccCCCCCCCchhHH
Q 001825 775 RPAAGTLVVCPTS-VLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCELA-KFDVVITTYSIVSMEVPKQPLGDKEDEE 852 (1009)
Q Consensus 775 rpa~~TLIVcP~S-LL~QW~~EI~K~~~~~~~LkVlVy~Gs~R~k~~~~La-kyDVVITTYstLs~ev~k~~l~d~dde~ 852 (1009)
++....||+.|.. |..|-+-|..+.- -.+...+++|-|.+|......+. .++++|.|-..|....
T Consensus 292 r~~p~~lvl~ptreLalqie~e~~kys-yng~ksvc~ygggnR~eqie~lkrgveiiiatPgrlndL~------------ 358 (629)
T KOG0336|consen 292 RNGPGVLVLTPTRELALQIEGEVKKYS-YNGLKSVCVYGGGNRNEQIEDLKRGVEIIIATPGRLNDLQ------------ 358 (629)
T ss_pred cCCCceEEEeccHHHHHHHHhHHhHhh-hcCcceEEEecCCCchhHHHHHhcCceEEeeCCchHhhhh------------
Confidence 3445789999986 6677777876653 35667889999998877666664 6899999987773211
Q ss_pred HHhhhcCCCCCCcccccccccCCCCCCcccccccCCCCCCcchhhccCcccccceeEEEEcccccccc--hhhHHHHHHH
Q 001825 853 EKMKIEGEDLPPMYCSSSKKRKCPPSSDRKGSKQKKGPDGLLLDIVAGPLAKVGWFRVVLDEAQSIKN--HRTQVARACW 930 (1009)
Q Consensus 853 ek~~~e~~~~~~~~~ssskkRK~~~~s~kk~s~~kk~~d~~~~d~~~s~L~~i~W~RVILDEAH~IKN--~~Sq~skAl~ 930 (1009)
+.+ .+.--..-+||||||.++-. ..-+..+.+.
T Consensus 359 ----~~n-----------------------------------------~i~l~siTYlVlDEADrMLDMgFEpqIrkill 393 (629)
T KOG0336|consen 359 ----MDN-----------------------------------------VINLASITYLVLDEADRMLDMGFEPQIRKILL 393 (629)
T ss_pred ----hcC-----------------------------------------eeeeeeeEEEEecchhhhhcccccHHHHHHhh
Confidence 000 11222345799999998854 5678888899
Q ss_pred hcccCeEEEEeccCCCCCHHHH
Q 001825 931 GLRAKRRWCLSGTPIQNAIDDL 952 (1009)
Q Consensus 931 ~L~Ak~RW~LTGTPIQNsL~DL 952 (1009)
.++..+..+||-.-.+..+..|
T Consensus 394 diRPDRqtvmTSATWP~~VrrL 415 (629)
T KOG0336|consen 394 DIRPDRQTVMTSATWPEGVRRL 415 (629)
T ss_pred hcCCcceeeeecccCchHHHHH
Confidence 9999998888776666666554
No 119
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=92.11 E-value=0.55 Score=59.05 Aligned_cols=45 Identities=18% Similarity=0.212 Sum_probs=34.0
Q ss_pred CCCchhHHHHHHHHHhccccCCCCcccEEEcCCCchHHHHHHHHHHHc
Q 001825 665 VPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKE 712 (1009)
Q Consensus 665 v~LrPHQkegV~WMlqrE~s~~~~rGGILADEMGLGKTVqaIALIl~~ 712 (1009)
..+||-|+.-...++...... ..|+|=...|.|||+..|+-.++.
T Consensus 20 ~qpY~~Q~a~M~rvl~~L~~~---q~~llESPTGTGKSLsLLCS~LAW 64 (945)
T KOG1132|consen 20 FQPYPTQLAFMTRVLSCLDRK---QNGLLESPTGTGKSLSLLCSTLAW 64 (945)
T ss_pred CCcchHHHHHHHHHHHHHHHh---hhhhccCCCCCCccHHHHHHHHHH
Confidence 446778888777777666544 358999999999999887766543
No 120
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=91.79 E-value=1.1 Score=59.46 Aligned_cols=39 Identities=18% Similarity=0.026 Sum_probs=24.1
Q ss_pred ceeEEEEcccc-cccchhhHHHHHHHhc----ccCeEEEEeccCC
Q 001825 906 GWFRVVLDEAQ-SIKNHRTQVARACWGL----RAKRRWCLSGTPI 945 (1009)
Q Consensus 906 ~W~RVILDEAH-~IKN~~Sq~skAl~~L----~Ak~RW~LTGTPI 945 (1009)
.+..||||||| +.-+..-... .++.+ ...+.+++|||.-
T Consensus 186 ~~~~IIIDEAHERsLn~DfLLg-~Lk~lL~~rpdlKvILmSATid 229 (1294)
T PRK11131 186 QYDTIIIDEAHERSLNIDFILG-YLKELLPRRPDLKVIITSATID 229 (1294)
T ss_pred cCcEEEecCccccccccchHHH-HHHHhhhcCCCceEEEeeCCCC
Confidence 36789999999 4555433222 22222 2246789999983
No 121
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=91.47 E-value=0.57 Score=59.42 Aligned_cols=57 Identities=16% Similarity=0.220 Sum_probs=37.7
Q ss_pred CcEEEEeChhhH----HHHHHHHHHHhcCCCCcEEEEEcCCCCCCCcccccCCCEEEEehhhhhc
Q 001825 778 AGTLVVCPTSVL----RQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCELAKFDVVITTYSIVSM 838 (1009)
Q Consensus 778 ~~TLIVcP~SLL----~QW~~EI~K~~~~~~~LkVlVy~Gs~R~k~~~~LakyDVVITTYstLs~ 838 (1009)
+++.||+++--| ..|...+.+++. +.|-+..+..........-.+||+-+|-..+.-
T Consensus 118 ~~VhVvT~NdyLA~RD~e~m~pvy~~LG----Lsvg~i~~~~~~~err~aY~~DItYgTn~e~gF 178 (870)
T CHL00122 118 KGVHIVTVNDYLAKRDQEWMGQIYRFLG----LTVGLIQEGMSSEERKKNYLKDITYVTNSELGF 178 (870)
T ss_pred CceEEEeCCHHHHHHHHHHHHHHHHHcC----CceeeeCCCCChHHHHHhcCCCCEecCCccccc
Confidence 467888888644 689999999887 777766554333333334467887777665543
No 122
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=91.28 E-value=0.54 Score=56.48 Aligned_cols=74 Identities=23% Similarity=0.249 Sum_probs=54.7
Q ss_pred hHHHHHHHHHhccccCCCCcccEEEcCCCchHHHHHHHHHHHcCCCCCCCcchhhhhhhhcccccccccccccccccccc
Q 001825 670 HQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGIQVNGLDLVKQ 749 (1009)
Q Consensus 670 HQkegV~WMlqrE~s~~~~rGGILADEMGLGKTVqaIALIl~~r~~~~~~~~~~k~~~e~l~~de~~d~~~~~~~~~~k~ 749 (1009)
-|-.|+.-|+.....+. +--.|---.|.|||.++--+|...
T Consensus 16 DQP~AI~~Lv~gi~~g~--~~QtLLGvTGSGKTfT~AnVI~~~------------------------------------- 56 (663)
T COG0556 16 DQPEAIAELVEGIENGL--KHQTLLGVTGSGKTFTMANVIAKV------------------------------------- 56 (663)
T ss_pred CcHHHHHHHHHHHhcCc--eeeEEeeeccCCchhHHHHHHHHh-------------------------------------
Confidence 68888888887665543 334566678999999988888542
Q ss_pred ccccccccCCCCCCccchhhhhhcCCCCCcEEEEeChh-hHHHHHHHHHHHhcCCCCcEEEE
Q 001825 750 ESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTS-VLRQWAEELRNKVTSKGSLSVLV 810 (1009)
Q Consensus 750 ~~~~C~~~s~~~s~~s~~~~~q~~~rpa~~TLIVcP~S-LL~QW~~EI~K~~~~~~~LkVlV 810 (1009)
-+||||++|+- |..|-..|++.|||. ....++|
T Consensus 57 ---------------------------~rPtLV~AhNKTLAaQLy~Efk~fFP~-NaVEYFV 90 (663)
T COG0556 57 ---------------------------QRPTLVLAHNKTLAAQLYSEFKEFFPE-NAVEYFV 90 (663)
T ss_pred ---------------------------CCCeEEEecchhHHHHHHHHHHHhCcC-cceEEEe
Confidence 14799999985 669999999999994 3344333
No 123
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=90.68 E-value=2.5 Score=53.24 Aligned_cols=106 Identities=21% Similarity=0.204 Sum_probs=76.0
Q ss_pred cCCCchhHHHHHHHHHhccccCCCCcccEEEcCCCchHHHHHHHHHHHcCCCCCCCcchhhhhhhhcccccccccccccc
Q 001825 664 AVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGIQVNG 743 (1009)
Q Consensus 664 kv~LrPHQkegV~WMlqrE~s~~~~rGGILADEMGLGKTVqaIALIl~~r~~~~~~~~~~k~~~e~l~~de~~d~~~~~~ 743 (1009)
...|-+-|..++.-+.... ... .-.+|.--.|-|||-.-+-+|....
T Consensus 196 ~~~Ln~~Q~~a~~~i~~~~-~~~--~~~Ll~GvTGSGKTEvYl~~i~~~L------------------------------ 242 (730)
T COG1198 196 WLALNQEQQAAVEAILSSL-GGF--APFLLDGVTGSGKTEVYLEAIAKVL------------------------------ 242 (730)
T ss_pred ccccCHHHHHHHHHHHHhc-ccc--cceeEeCCCCCcHHHHHHHHHHHHH------------------------------
Confidence 3467889999999998764 222 3468899999999987777774321
Q ss_pred ccccccccccccccCCCCCCccchhhhhhcCCCCCcEEEEeCh-hhHHHHHHHHHHHhcCCCCcEEEEEcCCCCCCCc--
Q 001825 744 LDLVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPT-SVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDP-- 820 (1009)
Q Consensus 744 ~~~~k~~~~~C~~~s~~~s~~s~~~~~q~~~rpa~~TLIVcP~-SLL~QW~~EI~K~~~~~~~LkVlVy~Gs~R~k~~-- 820 (1009)
...+.+||+||- ++..|-.+.|+..|. .++.++|..-.....
T Consensus 243 -------------------------------~~GkqvLvLVPEI~Ltpq~~~rf~~rFg----~~v~vlHS~Ls~~er~~ 287 (730)
T COG1198 243 -------------------------------AQGKQVLVLVPEIALTPQLLARFKARFG----AKVAVLHSGLSPGERYR 287 (730)
T ss_pred -------------------------------HcCCEEEEEeccccchHHHHHHHHHHhC----CChhhhcccCChHHHHH
Confidence 011358999998 589999999999987 788888887543221
Q ss_pred ----ccccCCCEEEEehhhhh
Q 001825 821 ----CELAKFDVVITTYSIVS 837 (1009)
Q Consensus 821 ----~~LakyDVVITTYstLs 837 (1009)
.......|||=|.+.+-
T Consensus 288 ~W~~~~~G~~~vVIGtRSAlF 308 (730)
T COG1198 288 VWRRARRGEARVVIGTRSALF 308 (730)
T ss_pred HHHHHhcCCceEEEEechhhc
Confidence 12356778888887763
No 124
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=90.62 E-value=1.9 Score=51.37 Aligned_cols=59 Identities=19% Similarity=0.210 Sum_probs=36.1
Q ss_pred cEEEEeChh-hHHHHHHHHHHHhcCCCCcEEEEEcCCCCCC-Cccc--ccCCCEEEEehhhhh
Q 001825 779 GTLVVCPTS-VLRQWAEELRNKVTSKGSLSVLVYHGSSRTK-DPCE--LAKFDVVITTYSIVS 837 (1009)
Q Consensus 779 ~TLIVcP~S-LL~QW~~EI~K~~~~~~~LkVlVy~Gs~R~k-~~~~--LakyDVVITTYstLs 837 (1009)
..|||.|.- |..|-.+=+..|..--.+++...+.|..... +... -....|+|.|-..|.
T Consensus 81 galIIsPTRELa~QI~~V~~~F~~~l~~l~~~l~vGG~~v~~Di~~fkee~~nIlVgTPGRL~ 143 (567)
T KOG0345|consen 81 GALIISPTRELARQIREVAQPFLEHLPNLNCELLVGGRSVEEDIKTFKEEGPNILVGTPGRLL 143 (567)
T ss_pred eEEEecCcHHHHHHHHHHHHHHHHhhhccceEEEecCccHHHHHHHHHHhCCcEEEeCchhHH
Confidence 579999986 6666654444333222367787787774332 2222 235669999988774
No 125
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=90.37 E-value=1.4 Score=56.66 Aligned_cols=57 Identities=21% Similarity=0.243 Sum_probs=35.7
Q ss_pred cEEEEeChh-hH---HHHHHHHHHHhcCCCCcEEEEEcCCCCCCCcccccCCCEEEEehhhhhcc
Q 001825 779 GTLVVCPTS-VL---RQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCELAKFDVVITTYSIVSME 839 (1009)
Q Consensus 779 ~TLIVcP~S-LL---~QW~~EI~K~~~~~~~LkVlVy~Gs~R~k~~~~LakyDVVITTYstLs~e 839 (1009)
++-||..+- |. ..|...+.+|+. |.|-+.............-.+||+-.|-..|.-+
T Consensus 181 gVHvVTvNDYLA~RDaewm~p~y~flG----LtVg~i~~~~~~~~Rr~aY~~DItYgTn~EfGFD 241 (1025)
T PRK12900 181 GVHVVTVNDYLAQRDKEWMNPVFEFHG----LSVGVILNTMRPEERREQYLCDITYGTNNEFGFD 241 (1025)
T ss_pred CcEEEeechHhhhhhHHHHHHHHHHhC----CeeeeeCCCCCHHHHHHhCCCcceecCCCccccc
Confidence 455666654 44 689999999987 7776664332222233445778887776666443
No 126
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=90.27 E-value=1.3 Score=51.28 Aligned_cols=56 Identities=13% Similarity=0.102 Sum_probs=38.8
Q ss_pred ccccceeEEEEcccccccc-------hhhHHHHHHHhcccCeEEEEeccCCCCCHHHHHHHHH
Q 001825 902 LAKVGWFRVVLDEAQSIKN-------HRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFR 957 (1009)
Q Consensus 902 L~~i~W~RVILDEAH~IKN-------~~Sq~skAl~~L~Ak~RW~LTGTPIQNsL~DLySLLr 957 (1009)
|..-.|.+|-+||.|.... .-..+...-+.+..-..+.||+|-..|-|+|.-.+|-
T Consensus 211 ~~~~~~~~iaidevhccsqwghdfr~dy~~l~ilkrqf~~~~iigltatatn~vl~d~k~il~ 273 (695)
T KOG0353|consen 211 LEAGFFKLIAIDEVHCCSQWGHDFRPDYKALGILKRQFKGAPIIGLTATATNHVLDDAKDILC 273 (695)
T ss_pred hhcceeEEEeecceeehhhhCcccCcchHHHHHHHHhCCCCceeeeehhhhcchhhHHHHHHh
Confidence 4455678899999997643 2222222334456667899999999999999877654
No 127
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms]
Probab=90.02 E-value=0.74 Score=57.31 Aligned_cols=46 Identities=24% Similarity=0.341 Sum_probs=32.9
Q ss_pred CCchhHHHHHHHHHhccccCC---CCcccEEEcCCCchHHHHHHHHHHH
Q 001825 666 PLLRHQRIALSWMVQKETSSL---HCSGGILADDQGLGKTISTIALILK 711 (1009)
Q Consensus 666 ~LrPHQkegV~WMlqrE~s~~---~~rGGILADEMGLGKTVqaIALIl~ 711 (1009)
.|-.-|+++|-+..|.....+ .--|-+|+|--|.||-.+..++|..
T Consensus 264 ~lSALQLEav~YAcQ~He~llPsG~RaGfLiGDGAGVGKGRTvAgiIfe 312 (1300)
T KOG1513|consen 264 HLSALQLEAVTYACQAHEVLLPSGQRAGFLIGDGAGVGKGRTVAGIIFE 312 (1300)
T ss_pred chhHHHHHHHHHHHhhhhhcCCCCccceeeeccCcccCCCceeEEEEeh
Confidence 356689999998887654322 1246788999999998876666644
No 128
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=89.93 E-value=0.69 Score=55.55 Aligned_cols=60 Identities=17% Similarity=0.233 Sum_probs=37.9
Q ss_pred EEEEeChh-hHHHHHHHHHHHhcCCCCcEE-EEEcCCCCCCCccccc-CCCEEEEehhhhhcc
Q 001825 780 TLVVCPTS-VLRQWAEELRNKVTSKGSLSV-LVYHGSSRTKDPCELA-KFDVVITTYSIVSME 839 (1009)
Q Consensus 780 TLIVcP~S-LL~QW~~EI~K~~~~~~~LkV-lVy~Gs~R~k~~~~La-kyDVVITTYstLs~e 839 (1009)
.|||||.- |..|-.+-+.+.+.+-.-+-. +++-|.++......+. ...|+|-|-..|.-+
T Consensus 214 ALVivPTREL~~Q~y~~~qKLl~~~hWIVPg~lmGGEkkKSEKARLRKGiNILIgTPGRLvDH 276 (708)
T KOG0348|consen 214 ALVIVPTRELALQIYETVQKLLKPFHWIVPGVLMGGEKKKSEKARLRKGINILIGTPGRLVDH 276 (708)
T ss_pred EEEEechHHHHHHHHHHHHHHhcCceEEeeceeecccccccHHHHHhcCceEEEcCchHHHHH
Confidence 69999986 888988888887653222222 2344444443334444 567899998887543
No 129
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=89.55 E-value=2.4 Score=52.80 Aligned_cols=41 Identities=24% Similarity=0.282 Sum_probs=30.9
Q ss_pred CCCchhHHHHHHHHHhccccCCCCcccEEEcCCCchHHHHHHHHHHH
Q 001825 665 VPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILK 711 (1009)
Q Consensus 665 v~LrPHQkegV~WMlqrE~s~~~~rGGILADEMGLGKTVqaIALIl~ 711 (1009)
..|-+.|++||.+.+... .-.|+--..|.|||.++++++..
T Consensus 156 ~~ln~~Q~~Av~~~l~~~------~~~lI~GpPGTGKT~t~~~ii~~ 196 (637)
T TIGR00376 156 PNLNESQKEAVSFALSSK------DLFLIHGPPGTGKTRTLVELIRQ 196 (637)
T ss_pred CCCCHHHHHHHHHHhcCC------CeEEEEcCCCCCHHHHHHHHHHH
Confidence 457889999999987531 12456667999999988888754
No 130
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=89.38 E-value=1.8 Score=56.00 Aligned_cols=57 Identities=18% Similarity=0.186 Sum_probs=35.3
Q ss_pred cEEEEeChh-hH---HHHHHHHHHHhcCCCCcEEEEEcCCC-CCCCcccccCCCEEEEehhhhhcc
Q 001825 779 GTLVVCPTS-VL---RQWAEELRNKVTSKGSLSVLVYHGSS-RTKDPCELAKFDVVITTYSIVSME 839 (1009)
Q Consensus 779 ~TLIVcP~S-LL---~QW~~EI~K~~~~~~~LkVlVy~Gs~-R~k~~~~LakyDVVITTYstLs~e 839 (1009)
++-||..+- |. ..|...+.+|+. |.|-+..... ........-.+||+-+|-..|.-+
T Consensus 212 gVHvVTVNDYLA~RDaewmgply~fLG----Lsvg~i~~~~~~~~~rr~aY~~DItYgTn~EfGFD 273 (1112)
T PRK12901 212 GVHVVTVNDYLAKRDSEWMGPLYEFHG----LSVDCIDKHQPNSEARRKAYNADITYGTNNEFGFD 273 (1112)
T ss_pred CcEEEEechhhhhccHHHHHHHHHHhC----CceeecCCCCCCHHHHHHhCCCcceecCCCccccc
Confidence 456666654 44 689999999987 7776664422 222223344678877776666443
No 131
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=89.35 E-value=2.9 Score=55.64 Aligned_cols=40 Identities=18% Similarity=0.075 Sum_probs=23.9
Q ss_pred ceeEEEEcccc-cccchhhHHH--HHHHhcc-cCeEEEEeccCC
Q 001825 906 GWFRVVLDEAQ-SIKNHRTQVA--RACWGLR-AKRRWCLSGTPI 945 (1009)
Q Consensus 906 ~W~RVILDEAH-~IKN~~Sq~s--kAl~~L~-Ak~RW~LTGTPI 945 (1009)
.++.||||||| +.-+..-... +.+...+ ..+.+++|||.-
T Consensus 179 ~~~~IIIDEaHERsL~~D~LL~lLk~il~~rpdLKlIlmSATld 222 (1283)
T TIGR01967 179 RYDTIIIDEAHERSLNIDFLLGYLKQLLPRRPDLKIIITSATID 222 (1283)
T ss_pred cCcEEEEcCcchhhccchhHHHHHHHHHhhCCCCeEEEEeCCcC
Confidence 36789999999 3544333221 2222222 346789999984
No 132
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=89.09 E-value=2.9 Score=51.93 Aligned_cols=48 Identities=23% Similarity=0.212 Sum_probs=37.3
Q ss_pred cceeEEEEcccccccchhhHHHHHHHhcccCeEEEEeccCCC-------CCHHHHHH
Q 001825 905 VGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQ-------NAIDDLYS 954 (1009)
Q Consensus 905 i~W~RVILDEAH~IKN~~Sq~skAl~~L~Ak~RW~LTGTPIQ-------NsL~DLyS 954 (1009)
..++.||||||.++- ....++.+..+....|++|-|=|-| +-+.||..
T Consensus 264 l~~dvlIvDEaSMvd--~~lm~~ll~al~~~~rlIlvGD~~QL~sV~~G~VL~DL~~ 318 (615)
T PRK10875 264 LHLDVLVVDEASMVD--LPMMARLIDALPPHARVIFLGDRDQLASVEAGAVLGDICR 318 (615)
T ss_pred CCCCeEEEChHhccc--HHHHHHHHHhcccCCEEEEecchhhcCCCCCCchHHHHHH
Confidence 357899999999994 3556677788888899999999887 44666654
No 133
>KOG4284 consensus DEAD box protein [Transcription]
Probab=88.77 E-value=0.91 Score=55.57 Aligned_cols=124 Identities=23% Similarity=0.268 Sum_probs=83.8
Q ss_pred EEEEeChh-hHHHHHHHHHHHhcCCCCcEEEEEcCCC-CCCCcccccCCCEEEEehhhhhcccCCCCCCCchhHHHHhhh
Q 001825 780 TLVVCPTS-VLRQWAEELRNKVTSKGSLSVLVYHGSS-RTKDPCELAKFDVVITTYSIVSMEVPKQPLGDKEDEEEKMKI 857 (1009)
Q Consensus 780 TLIVcP~S-LL~QW~~EI~K~~~~~~~LkVlVy~Gs~-R~k~~~~LakyDVVITTYstLs~ev~k~~l~d~dde~ek~~~ 857 (1009)
.|||+|.- |.-|-++.|.+.++....++.-+|-|.. -..+...+.+..|||-|-..+...+..
T Consensus 96 ~~Iv~PTREiaVQI~~tv~~v~~sf~g~~csvfIGGT~~~~d~~rlk~~rIvIGtPGRi~qL~el--------------- 160 (980)
T KOG4284|consen 96 KVIVTPTREIAVQIKETVRKVAPSFTGARCSVFIGGTAHKLDLIRLKQTRIVIGTPGRIAQLVEL--------------- 160 (980)
T ss_pred eEEEecchhhhhHHHHHHHHhcccccCcceEEEecCchhhhhhhhhhhceEEecCchHHHHHHHh---------------
Confidence 69999986 7789899998877755667888877664 445667788888999998887543210
Q ss_pred cCCCCCCcccccccccCCCCCCcccccccCCCCCCcchhhccCcccccceeEEEEcccccccc---hhhHHHHHHHhcc-
Q 001825 858 EGEDLPPMYCSSSKKRKCPPSSDRKGSKQKKGPDGLLLDIVAGPLAKVGWFRVVLDEAQSIKN---HRTQVARACWGLR- 933 (1009)
Q Consensus 858 e~~~~~~~~~ssskkRK~~~~s~kk~s~~kk~~d~~~~d~~~s~L~~i~W~RVILDEAH~IKN---~~Sq~skAl~~L~- 933 (1009)
..+..-+.++.|||||..+-. ..-.+...+..|.
T Consensus 161 ------------------------------------------~~~n~s~vrlfVLDEADkL~~t~sfq~~In~ii~slP~ 198 (980)
T KOG4284|consen 161 ------------------------------------------GAMNMSHVRLFVLDEADKLMDTESFQDDINIIINSLPQ 198 (980)
T ss_pred ------------------------------------------cCCCccceeEEEeccHHhhhchhhHHHHHHHHHHhcch
Confidence 113444567899999998854 3345556666774
Q ss_pred cCeEEEEeccCCCCCHHHHHHHHHhhCCCC
Q 001825 934 AKRRWCLSGTPIQNAIDDLYSYFRFLRYDP 963 (1009)
Q Consensus 934 Ak~RW~LTGTPIQNsL~DLySLLrFLrp~p 963 (1009)
.+..+++|||=-+| |+++. -.|++-..
T Consensus 199 ~rQv~a~SATYp~n-Ldn~L--sk~mrdp~ 225 (980)
T KOG4284|consen 199 IRQVAAFSATYPRN-LDNLL--SKFMRDPA 225 (980)
T ss_pred hheeeEEeccCchh-HHHHH--HHHhcccc
Confidence 45567889995544 44432 24555433
No 134
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=88.59 E-value=2.7 Score=53.90 Aligned_cols=42 Identities=12% Similarity=0.143 Sum_probs=26.3
Q ss_pred CCCchhHHHHHHHHHhccccCCCCcccEEEcCCCchHHHHHHHHH
Q 001825 665 VPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 709 (1009)
Q Consensus 665 v~LrPHQkegV~WMlqrE~s~~~~rGGILADEMGLGKTVqaIALI 709 (1009)
...|+-|.+-...+.+..... .-.++--..|.|||+.-+.-+
T Consensus 244 ~e~R~~Q~~ma~~V~~~l~~~---~~~~~eA~tGtGKT~ayllp~ 285 (820)
T PRK07246 244 LEERPKQESFAKLVGEDFHDG---PASFIEAQTGIGKTYGYLLPL 285 (820)
T ss_pred CccCHHHHHHHHHHHHHHhCC---CcEEEECCCCCcHHHHHHHHH
Confidence 457899998666555544322 123344488999998765443
No 135
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=88.46 E-value=4 Score=43.15 Aligned_cols=39 Identities=28% Similarity=0.264 Sum_probs=26.8
Q ss_pred CCchhHHHHHHHHHhccccCCCCcccEEEcCCCchHHHHHHHHH
Q 001825 666 PLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 709 (1009)
Q Consensus 666 ~LrPHQkegV~WMlqrE~s~~~~rGGILADEMGLGKTVqaIALI 709 (1009)
+|-+-|++++..++.... +-.+|--..|.|||...-+++
T Consensus 1 ~L~~~Q~~a~~~~l~~~~-----~~~~l~G~aGtGKT~~l~~~~ 39 (196)
T PF13604_consen 1 TLNEEQREAVRAILTSGD-----RVSVLQGPAGTGKTTLLKALA 39 (196)
T ss_dssp -S-HHHHHHHHHHHHCTC-----SEEEEEESTTSTHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhcCC-----eEEEEEECCCCCHHHHHHHHH
Confidence 377899999999986422 235666678999998654443
No 136
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=88.07 E-value=3.5 Score=50.91 Aligned_cols=48 Identities=23% Similarity=0.234 Sum_probs=36.4
Q ss_pred cceeEEEEcccccccchhhHHHHHHHhcccCeEEEEeccCCC-------CCHHHHHH
Q 001825 905 VGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQ-------NAIDDLYS 954 (1009)
Q Consensus 905 i~W~RVILDEAH~IKN~~Sq~skAl~~L~Ak~RW~LTGTPIQ-------NsL~DLyS 954 (1009)
..++.||||||-++-. ....+.+..+....|++|.|=|-| +-+.||..
T Consensus 258 l~~dvlIiDEaSMvd~--~l~~~ll~al~~~~rlIlvGD~~QLpsV~~G~vl~dl~~ 312 (586)
T TIGR01447 258 LPLDVLVVDEASMVDL--PLMAKLLKALPPNTKLILLGDKNQLPSVEAGAVLGDLCE 312 (586)
T ss_pred CcccEEEEcccccCCH--HHHHHHHHhcCCCCEEEEECChhhCCCCCCChhHHHHHH
Confidence 3578999999999964 355566777888899999998876 34556654
No 137
>PRK14873 primosome assembly protein PriA; Provisional
Probab=87.89 E-value=2.4 Score=53.08 Aligned_cols=55 Identities=27% Similarity=0.273 Sum_probs=40.3
Q ss_pred cEEEEeChh-hHHHHHHHHHHHhcCCCCcEEEEEcCCCCCCCc------ccccCCCEEEEehhhh
Q 001825 779 GTLVVCPTS-VLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDP------CELAKFDVVITTYSIV 836 (1009)
Q Consensus 779 ~TLIVcP~S-LL~QW~~EI~K~~~~~~~LkVlVy~Gs~R~k~~------~~LakyDVVITTYstL 836 (1009)
.+||++|.. +..|+.+-|++.++ .-.+.+||..-..... ....+..|||-|++.+
T Consensus 190 ~vLvLvPEi~lt~q~~~rl~~~f~---~~~v~~lhS~l~~~~R~~~w~~~~~G~~~IViGtRSAv 251 (665)
T PRK14873 190 GALVVVPDQRDVDRLEAALRALLG---AGDVAVLSAGLGPADRYRRWLAVLRGQARVVVGTRSAV 251 (665)
T ss_pred eEEEEecchhhHHHHHHHHHHHcC---CCcEEEECCCCCHHHHHHHHHHHhCCCCcEEEEcceeE
Confidence 589999984 88999999999886 3468889887543211 1234577899888766
No 138
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]
Probab=87.70 E-value=1.3 Score=55.21 Aligned_cols=40 Identities=20% Similarity=0.204 Sum_probs=28.1
Q ss_pred ccCCCchhHHHHHHHHHhccccCCCCcccEEEcCCCchHHHHHHHHH
Q 001825 663 LAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 709 (1009)
Q Consensus 663 Lkv~LrPHQkegV~WMlqrE~s~~~~rGGILADEMGLGKTVqaIALI 709 (1009)
-.+.|-|+|..|+.-+-+.+ ..++.--.-.|||+.|=-.|
T Consensus 126 YPF~LDpFQ~~aI~Cidr~e-------SVLVSAHTSAGKTVVAeYAI 165 (1041)
T KOG0948|consen 126 YPFTLDPFQSTAIKCIDRGE-------SVLVSAHTSAGKTVVAEYAI 165 (1041)
T ss_pred CCcccCchHhhhhhhhcCCc-------eEEEEeecCCCcchHHHHHH
Confidence 35678999999997766443 23455557899999974444
No 139
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=87.19 E-value=2.2 Score=54.35 Aligned_cols=57 Identities=18% Similarity=0.131 Sum_probs=35.7
Q ss_pred cEEEEeChhhH----HHHHHHHHHHhcCCCCcEEEEEcCCCCCCCcccccCCCEEEEehhhhhcc
Q 001825 779 GTLVVCPTSVL----RQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCELAKFDVVITTYSIVSME 839 (1009)
Q Consensus 779 ~TLIVcP~SLL----~QW~~EI~K~~~~~~~LkVlVy~Gs~R~k~~~~LakyDVVITTYstLs~e 839 (1009)
++-||+.+--| ..|...+.+|+. |.|-+.............-.+||+-+|...|.-+
T Consensus 121 gVhVVTvNdYLA~RDae~mg~vy~fLG----LsvG~i~~~~~~~~rr~aY~~DItYgTn~E~gFD 181 (925)
T PRK12903 121 GVIVSTVNEYLAERDAEEMGKVFNFLG----LSVGINKANMDPNLKREAYACDITYSVHSELGFD 181 (925)
T ss_pred ceEEEecchhhhhhhHHHHHHHHHHhC----CceeeeCCCCChHHHHHhccCCCeeecCcccchh
Confidence 56677766544 689999999987 7776554332222223344678887777666443
No 140
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=87.01 E-value=4.7 Score=50.97 Aligned_cols=39 Identities=18% Similarity=0.132 Sum_probs=29.7
Q ss_pred ceeEEEEcccccccchhhHHHHHHHhcccCeEEEEeccCCC
Q 001825 906 GWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQ 946 (1009)
Q Consensus 906 ~W~RVILDEAH~IKN~~Sq~skAl~~L~Ak~RW~LTGTPIQ 946 (1009)
..+.||||||+++-.. ...+.+..+....|++|-|=|-|
T Consensus 416 ~~~llIvDEaSMvd~~--~~~~Ll~~~~~~~rlilvGD~~Q 454 (720)
T TIGR01448 416 DCDLLIVDESSMMDTW--LALSLLAALPDHARLLLVGDTDQ 454 (720)
T ss_pred cCCEEEEeccccCCHH--HHHHHHHhCCCCCEEEEECcccc
Confidence 3568999999999543 34556667777889999887766
No 141
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=85.97 E-value=4 Score=51.71 Aligned_cols=52 Identities=23% Similarity=0.248 Sum_probs=29.8
Q ss_pred eeEEEEcccccccch--------hhHHHHHHHhc--ccCeEEEEeccCCCCCHHHHHHHHHhhCCC
Q 001825 907 WFRVVLDEAQSIKNH--------RTQVARACWGL--RAKRRWCLSGTPIQNAIDDLYSYFRFLRYD 962 (1009)
Q Consensus 907 W~RVILDEAH~IKN~--------~Sq~skAl~~L--~Ak~RW~LTGTPIQNsL~DLySLLrFLrp~ 962 (1009)
|+.|||||+-.+-++ .......+..+ ++++.+++-||-- .. +..++.-++|+
T Consensus 143 yDvVIIDEv~svL~qL~S~Tm~~~~~v~~~L~~lI~~ak~VI~~DA~ln-~~---tvdFl~~~Rp~ 204 (824)
T PF02399_consen 143 YDVVIIDEVMSVLNQLFSPTMRQREEVDNLLKELIRNAKTVIVMDADLN-DQ---TVDFLASCRPD 204 (824)
T ss_pred cCEEEEehHHHHHHHHhHHHHhhHHHHHHHHHHHHHhCCeEEEecCCCC-HH---HHHHHHHhCCC
Confidence 899999998654331 12222233333 6889999988832 22 33344445553
No 142
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=85.52 E-value=5.3 Score=51.90 Aligned_cols=39 Identities=13% Similarity=0.159 Sum_probs=25.2
Q ss_pred CCCchhHHHHHHHHHhccccCCCCcccEEEcCCCchHHHHHH
Q 001825 665 VPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTI 706 (1009)
Q Consensus 665 v~LrPHQkegV~WMlqrE~s~~~~rGGILADEMGLGKTVqaI 706 (1009)
...||-|.+-...+.+..... .-.++=-..|.|||+--|
T Consensus 256 ~e~R~~Q~~m~~~v~~~l~~~---~~~~iEA~TGtGKTlaYL 294 (928)
T PRK08074 256 YEKREGQQEMMKEVYTALRDS---EHALIEAGTGTGKSLAYL 294 (928)
T ss_pred CcCCHHHHHHHHHHHHHHhcC---CCEEEECCCCCchhHHHH
Confidence 457999999666666554422 122333389999998765
No 143
>KOG1131 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 5'-3' helicase subunit RAD3 [Transcription; Replication, recombination and repair]
Probab=84.89 E-value=1.3 Score=53.31 Aligned_cols=43 Identities=30% Similarity=0.482 Sum_probs=30.8
Q ss_pred CchhHHHHHHHHHhccccCCCCcc-cEEEcCCCchHHHHHHHHHHHcC
Q 001825 667 LLRHQRIALSWMVQKETSSLHCSG-GILADDQGLGKTISTIALILKER 713 (1009)
Q Consensus 667 LrPHQkegV~WMlqrE~s~~~~rG-GILADEMGLGKTVqaIALIl~~r 713 (1009)
.+|-| +.+|.+..+. +.++| |+|--.-|.|||+..|++|.+.+
T Consensus 17 iYPEQ---~~YM~elKrs-LDakGh~llEMPSGTGKTvsLLSli~aYq 60 (755)
T KOG1131|consen 17 IYPEQ---YEYMRELKRS-LDAKGHCLLEMPSGTGKTVSLLSLIIAYQ 60 (755)
T ss_pred cCHHH---HHHHHHHHHh-hccCCcEEEECCCCCCcchHHHHHHHHHH
Confidence 46666 4567655443 23344 89999999999999999986544
No 144
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=84.54 E-value=3.2 Score=47.60 Aligned_cols=18 Identities=28% Similarity=0.457 Sum_probs=14.4
Q ss_pred EcCCCchHHHHHHHHHHH
Q 001825 694 ADDQGLGKTISTIALILK 711 (1009)
Q Consensus 694 ADEMGLGKTVqaIALIl~ 711 (1009)
--..|.|||+.++.++..
T Consensus 7 ~G~aGTGKTvla~~l~~~ 24 (352)
T PF09848_consen 7 TGGAGTGKTVLALNLAKE 24 (352)
T ss_pred EecCCcCHHHHHHHHHHH
Confidence 335799999999988854
No 145
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=83.64 E-value=0.47 Score=57.66 Aligned_cols=43 Identities=26% Similarity=0.384 Sum_probs=31.7
Q ss_pred ccCCCchhHHHHHHHHHhccccCCCCcccEEEcCCCchHHHHHHHHHHH
Q 001825 663 LAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILK 711 (1009)
Q Consensus 663 Lkv~LrPHQkegV~WMlqrE~s~~~~rGGILADEMGLGKTVqaIALIl~ 711 (1009)
+...|-+-|+.|+.+..... .+ .++=-.+|.|||.+..-+|..
T Consensus 182 ~~~~ln~SQk~Av~~~~~~k--~l----~~I~GPPGTGKT~TlvEiI~q 224 (649)
T KOG1803|consen 182 FNKNLNSSQKAAVSFAINNK--DL----LIIHGPPGTGKTRTLVEIISQ 224 (649)
T ss_pred CCccccHHHHHHHHHHhccC--Cc----eEeeCCCCCCceeeHHHHHHH
Confidence 44568899999999988653 11 244457899999998877743
No 146
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=83.32 E-value=2.4 Score=54.39 Aligned_cols=127 Identities=24% Similarity=0.259 Sum_probs=74.4
Q ss_pred EEEEeChh-hHHHHHHHHHHHhcCCCCcEEEEEcCCCCCCCccccc-CCCEEEEehhhhhcccCCCCCCCchhHHHHhhh
Q 001825 780 TLVVCPTS-VLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCELA-KFDVVITTYSIVSMEVPKQPLGDKEDEEEKMKI 857 (1009)
Q Consensus 780 TLIVcP~S-LL~QW~~EI~K~~~~~~~LkVlVy~Gs~R~k~~~~La-kyDVVITTYstLs~ev~k~~l~d~dde~ek~~~ 857 (1009)
.|||||.- +..|-.++++++...-+..-|.+|.|........++. ..+|||.|-..+.-.+ .
T Consensus 441 ~li~aPtrela~QI~r~~~kf~k~l~ir~v~vygg~~~~~qiaelkRg~eIvV~tpGRmiD~l----------------~ 504 (997)
T KOG0334|consen 441 ALILAPTRELAMQIHREVRKFLKLLGIRVVCVYGGSGISQQIAELKRGAEIVVCTPGRMIDIL----------------C 504 (997)
T ss_pred EEEEcCCHHHHHHHHHHHHHHHhhcCceEEEecCCccHHHHHHHHhcCCceEEeccchhhhhH----------------h
Confidence 59999985 8899999998887643334455666666555444443 3778888866542110 0
Q ss_pred cCCCCCCcccccccccCCCCCCcccccccCCCCCCcchhhccCcccccceeEEEEcccccc--cchhhHHHHHHHhcccC
Q 001825 858 EGEDLPPMYCSSSKKRKCPPSSDRKGSKQKKGPDGLLLDIVAGPLAKVGWFRVVLDEAQSI--KNHRTQVARACWGLRAK 935 (1009)
Q Consensus 858 e~~~~~~~~~ssskkRK~~~~s~kk~s~~kk~~d~~~~d~~~s~L~~i~W~RVILDEAH~I--KN~~Sq~skAl~~L~Ak 935 (1009)
..+ .....-.+--.||+|||.++ +...-+..+.+..|+..
T Consensus 505 ~n~--------------------------------------grvtnlrR~t~lv~deaDrmfdmgfePq~~~Ii~nlrpd 546 (997)
T KOG0334|consen 505 ANS--------------------------------------GRVTNLRRVTYLVLDEADRMFDMGFEPQITRILQNLRPD 546 (997)
T ss_pred hcC--------------------------------------CccccccccceeeechhhhhheeccCcccchHHhhcchh
Confidence 000 00011112336999999987 34455666677778766
Q ss_pred eEEEE-eccCCCCCHHHHHHHHHhhCCCCC
Q 001825 936 RRWCL-SGTPIQNAIDDLYSYFRFLRYDPF 964 (1009)
Q Consensus 936 ~RW~L-TGTPIQNsL~DLySLLrFLrp~pf 964 (1009)
+-..| ++| +.+. ++++-+-+...|.
T Consensus 547 rQtvlfSat-fpr~---m~~la~~vl~~Pv 572 (997)
T KOG0334|consen 547 RQTVLFSAT-FPRS---MEALARKVLKKPV 572 (997)
T ss_pred hhhhhhhhh-hhHH---HHHHHHHhhcCCe
Confidence 65444 555 3333 6666665555554
No 147
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=83.29 E-value=5.6 Score=44.95 Aligned_cols=59 Identities=22% Similarity=0.176 Sum_probs=44.5
Q ss_pred ccccceeEEEEcccccccc--hhhHHHHHHHhcc-cCeEEEEeccCCCCCHHHHHHHHHhhCCCCC
Q 001825 902 LAKVGWFRVVLDEAQSIKN--HRTQVARACWGLR-AKRRWCLSGTPIQNAIDDLYSYFRFLRYDPF 964 (1009)
Q Consensus 902 L~~i~W~RVILDEAH~IKN--~~Sq~skAl~~L~-Ak~RW~LTGTPIQNsL~DLySLLrFLrp~pf 964 (1009)
|.-....++|||||..+-| .+.+++...+.|. .-..+++|||-- .|+.-+.++..++|.
T Consensus 165 L~tr~vkmlVLDEaDemL~kgfk~Qiydiyr~lp~~~Qvv~~SATlp----~eilemt~kfmtdpv 226 (400)
T KOG0328|consen 165 LRTRAVKMLVLDEADEMLNKGFKEQIYDIYRYLPPGAQVVLVSATLP----HEILEMTEKFMTDPV 226 (400)
T ss_pred ccccceeEEEeccHHHHHHhhHHHHHHHHHHhCCCCceEEEEeccCc----HHHHHHHHHhcCCce
Confidence 4444567899999998854 5788899989896 667788899954 466667777777764
No 148
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=81.61 E-value=7.9 Score=49.36 Aligned_cols=58 Identities=19% Similarity=0.220 Sum_probs=35.4
Q ss_pred CcEEEEeChh-hH---HHHHHHHHHHhcCCCCcEEEEEcCCCCCCCcccccCCCEEEEehhhhhcc
Q 001825 778 AGTLVVCPTS-VL---RQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCELAKFDVVITTYSIVSME 839 (1009)
Q Consensus 778 ~~TLIVcP~S-LL---~QW~~EI~K~~~~~~~LkVlVy~Gs~R~k~~~~LakyDVVITTYstLs~e 839 (1009)
+++.||..+- |. ..|...+-.|+. +.|-+....-........-..||.=+|.+.+.-+
T Consensus 122 kgVhvVTvNdYLA~RDae~m~~l~~~LG----lsvG~~~~~m~~~ek~~aY~~DItY~TnnElGFD 183 (822)
T COG0653 122 KGVHVVTVNDYLARRDAEWMGPLYEFLG----LSVGVILAGMSPEEKRAAYACDITYGTNNELGFD 183 (822)
T ss_pred CCcEEeeehHHhhhhCHHHHHHHHHHcC----CceeeccCCCChHHHHHHHhcCceeccccccCcc
Confidence 4567777764 33 689999999876 6776654443222222334677777776665443
No 149
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=81.57 E-value=21 Score=45.63 Aligned_cols=57 Identities=16% Similarity=0.129 Sum_probs=36.0
Q ss_pred ceeEEEEcccccccchhhHHHHHHHhc---ccCeEEEEeccCCCCCHHHHHHHHHhhCCCCC
Q 001825 906 GWFRVVLDEAQSIKNHRTQVARACWGL---RAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPF 964 (1009)
Q Consensus 906 ~W~RVILDEAH~IKN~~Sq~skAl~~L---~Ak~RW~LTGTPIQNsL~DLySLLrFLrp~pf 964 (1009)
+|.++||||+|++.+.. ....++.| ...-+++|+.|=.+.-+.-|.+-+..++..++
T Consensus 119 r~KVIIIDEah~LT~~A--~NALLKtLEEPP~~v~FILaTtd~~KIp~TIrSRCq~f~Fk~L 178 (830)
T PRK07003 119 RFKVYMIDEVHMLTNHA--FNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSRCLQFNLKQM 178 (830)
T ss_pred CceEEEEeChhhCCHHH--HHHHHHHHHhcCCCeEEEEEECChhhccchhhhheEEEecCCc
Confidence 57889999999996532 22233444 34678888888666555555555544444444
No 150
>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities [].
Probab=81.10 E-value=7.8 Score=47.63 Aligned_cols=46 Identities=13% Similarity=0.047 Sum_probs=34.2
Q ss_pred CCcccCCCchhHHHHHHHHHhccccCCCCcccEEEcCCCchHHHHHHHHHH
Q 001825 660 DGVLAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALIL 710 (1009)
Q Consensus 660 ~glLkv~LrPHQkegV~WMlqrE~s~~~~rGGILADEMGLGKTVqaIALIl 710 (1009)
+|.......|||++-..-|-... ++--.|.=-.-+|||..++.+|.
T Consensus 10 pG~w~~~~~Py~~eimd~~~~~~-----v~~Vv~~k~aQ~GkT~~~~n~~g 55 (557)
T PF05876_consen 10 PGPWRTDRTPYLREIMDALSDPS-----VREVVVMKSAQVGKTELLLNWIG 55 (557)
T ss_pred CCCCCCCCChhHHHHHHhcCCcC-----ccEEEEEEcchhhHhHHHHhhce
Confidence 34567789999999988887543 24456666778999997777664
No 151
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=81.06 E-value=2.9 Score=50.68 Aligned_cols=56 Identities=25% Similarity=0.323 Sum_probs=40.6
Q ss_pred EEEEeChh-hHHHHHHHHHHHhcCCCCcEEEEEcCCCCCCCcccc--cCCCEEEEehhhh
Q 001825 780 TLVVCPTS-VLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCEL--AKFDVVITTYSIV 836 (1009)
Q Consensus 780 TLIVcP~S-LL~QW~~EI~K~~~~~~~LkVlVy~Gs~R~k~~~~L--akyDVVITTYstL 836 (1009)
.|||+|.- |..|-.+-|..... ...+++..+.|.-.......+ ...|||+.|-..|
T Consensus 266 ~LV~tPTRELa~QV~~Hl~ai~~-~t~i~v~si~GGLavqKQqRlL~~~p~IVVATPGRl 324 (731)
T KOG0347|consen 266 ALVVTPTRELAHQVKQHLKAIAE-KTQIRVASITGGLAVQKQQRLLNQRPDIVVATPGRL 324 (731)
T ss_pred eEEecChHHHHHHHHHHHHHhcc-ccCeEEEEeechhHHHHHHHHHhcCCCEEEecchHH
Confidence 69999986 77888888876654 557899888887543322222 2678999998877
No 152
>PHA02533 17 large terminase protein; Provisional
Probab=80.89 E-value=19 Score=44.22 Aligned_cols=44 Identities=23% Similarity=0.229 Sum_probs=29.7
Q ss_pred CcccCCCchhHHHHHHHHHhccccCCCCcccEEEcCCCchHHHHHHHHHHH
Q 001825 661 GVLAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILK 711 (1009)
Q Consensus 661 glLkv~LrPHQkegV~WMlqrE~s~~~~rGGILADEMGLGKTVqaIALIl~ 711 (1009)
+...++|.|+|+.-+.+|..+ +=.++.=.=..|||..+.++++.
T Consensus 54 ~~~Pf~L~p~Q~~i~~~~~~~-------R~~ii~~aRq~GKStl~a~~al~ 97 (534)
T PHA02533 54 GTIKVQMRDYQKDMLKIMHKN-------RFNACNLSRQLGKTTVVAIFLLH 97 (534)
T ss_pred CceecCCcHHHHHHHHHHhcC-------eEEEEEEcCcCChHHHHHHHHHH
Confidence 335678999999999887421 11244445589999988766543
No 153
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=80.73 E-value=6.5 Score=51.75 Aligned_cols=54 Identities=15% Similarity=0.314 Sum_probs=35.0
Q ss_pred cEEEEeCh-hhHHHHHHHHHHHhcCCCCcEEEEEcCCCCCCCcccccCCCEEEEehh
Q 001825 779 GTLVVCPT-SVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCELAKFDVVITTYS 834 (1009)
Q Consensus 779 ~TLIVcP~-SLL~QW~~EI~K~~~~~~~LkVlVy~Gs~R~k~~~~LakyDVVITTYs 834 (1009)
...-|+|- +|+..|...|.+++. +-.++|.-.+|.... ....+..-.|+++|-+
T Consensus 366 KIVYIAPmKaLvqE~VgsfSkRla-~~GI~V~ElTgD~~l-~~~qieeTqVIV~TPE 420 (1674)
T KOG0951|consen 366 KIVYIAPMKALVQEMVGSFSKRLA-PLGITVLELTGDSQL-GKEQIEETQVIVTTPE 420 (1674)
T ss_pred eEEEEeeHHHHHHHHHHHHHhhcc-ccCcEEEEecccccc-hhhhhhcceeEEeccc
Confidence 45677774 799999999999987 344666666666432 1233445556666643
No 154
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=80.06 E-value=6.7 Score=47.33 Aligned_cols=57 Identities=19% Similarity=0.216 Sum_probs=38.6
Q ss_pred EEEEeChh-hHHHHHHHHHHHhcCCCCcEEEEEcCCC-CCCCcccc-cCCCEEEEehhhhh
Q 001825 780 TLVVCPTS-VLRQWAEELRNKVTSKGSLSVLVYHGSS-RTKDPCEL-AKFDVVITTYSIVS 837 (1009)
Q Consensus 780 TLIVcP~S-LL~QW~~EI~K~~~~~~~LkVlVy~Gs~-R~k~~~~L-akyDVVITTYstLs 837 (1009)
.||+||.- |..|-..|.++|.. ...|+++..+|.. .-.....| ..+.||++|-..|.
T Consensus 299 ~vilvPTrela~Qi~~eaKkf~K-~ygl~~v~~ygGgsk~eQ~k~Lk~g~EivVaTPgRli 358 (731)
T KOG0339|consen 299 GVILVPTRELASQIFSEAKKFGK-AYGLRVVAVYGGGSKWEQSKELKEGAEIVVATPGRLI 358 (731)
T ss_pred EEEEeccHHHHHHHHHHHHHhhh-hccceEEEeecCCcHHHHHHhhhcCCeEEEechHHHH
Confidence 47778874 78999999887754 4567777666553 22222222 57889999988874
No 155
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=79.89 E-value=8.2 Score=48.38 Aligned_cols=69 Identities=22% Similarity=0.203 Sum_probs=50.4
Q ss_pred chhHHHHHHHHHhccccCCCCcccEEEcCCCchHHHHHHHHHHHcCCCCCCCcchhhhhhhhcccccccccccccccccc
Q 001825 668 LRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGIQVNGLDLV 747 (1009)
Q Consensus 668 rPHQkegV~WMlqrE~s~~~~rGGILADEMGLGKTVqaIALIl~~r~~~~~~~~~~k~~~e~l~~de~~d~~~~~~~~~~ 747 (1009)
--.|-.++.-+.+....+. +.-+|---.|.|||.++..++...
T Consensus 11 ~~~Q~~ai~~l~~~~~~~~--~~~~l~Gvtgs~kt~~~a~~~~~~----------------------------------- 53 (655)
T TIGR00631 11 AGDQPKAIAKLVEGLTDGE--KHQTLLGVTGSGKTFTMANVIAQV----------------------------------- 53 (655)
T ss_pred ChHHHHHHHHHHHhhhcCC--CcEEEECCCCcHHHHHHHHHHHHh-----------------------------------
Confidence 3478888888876653321 223566678999999987777321
Q ss_pred ccccccccccCCCCCCccchhhhhhcCCCCCcEEEEeChh-hHHHHHHHHHHHhcC
Q 001825 748 KQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTS-VLRQWAEELRNKVTS 802 (1009)
Q Consensus 748 k~~~~~C~~~s~~~s~~s~~~~~q~~~rpa~~TLIVcP~S-LL~QW~~EI~K~~~~ 802 (1009)
.+|+|||+|.- +..||.+|++.|++.
T Consensus 54 -----------------------------~~p~Lvi~~n~~~A~ql~~el~~f~p~ 80 (655)
T TIGR00631 54 -----------------------------NRPTLVIAHNKTLAAQLYNEFKEFFPE 80 (655)
T ss_pred -----------------------------CCCEEEEECCHHHHHHHHHHHHHhCCC
Confidence 13799999986 668999999999873
No 156
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=79.31 E-value=3.2 Score=50.12 Aligned_cols=57 Identities=18% Similarity=0.192 Sum_probs=38.3
Q ss_pred cEEEEeChh-hHHHHHHHHHHHhcCCCCcEEEEEcCCCCCCCc--ccccCCCEEEEehhhh
Q 001825 779 GTLVVCPTS-VLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDP--CELAKFDVVITTYSIV 836 (1009)
Q Consensus 779 ~TLIVcP~S-LL~QW~~EI~K~~~~~~~LkVlVy~Gs~R~k~~--~~LakyDVVITTYstL 836 (1009)
-.+|++|.- |..|-.+|-.++....+ ++++..-|..+.... ..-..++|||.|-..|
T Consensus 324 yaiilaptReLaqqIeeEt~kf~~~lg-~r~vsvigg~s~EEq~fqls~gceiviatPgrL 383 (673)
T KOG0333|consen 324 YAIILAPTRELAQQIEEETNKFGKPLG-IRTVSVIGGLSFEEQGFQLSMGCEIVIATPGRL 383 (673)
T ss_pred eeeeechHHHHHHHHHHHHHHhccccc-ceEEEEecccchhhhhhhhhccceeeecCchHH
Confidence 368999987 66888888887765333 666655555543332 2234688999998776
No 157
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=73.67 E-value=3 Score=39.79 Aligned_cols=35 Identities=26% Similarity=0.347 Sum_probs=27.0
Q ss_pred eEEEEcccccccchhhHHHHHHHhc--ccCeEEEEeccC
Q 001825 908 FRVVLDEAQSIKNHRTQVARACWGL--RAKRRWCLSGTP 944 (1009)
Q Consensus 908 ~RVILDEAH~IKN~~Sq~skAl~~L--~Ak~RW~LTGTP 944 (1009)
..|||||+|.+. +......++.| ...-.++|.|||
T Consensus 89 ~~lviDe~~~l~--~~~~l~~l~~l~~~~~~~vvl~G~~ 125 (131)
T PF13401_consen 89 VLLVIDEADHLF--SDEFLEFLRSLLNESNIKVVLVGTP 125 (131)
T ss_dssp EEEEEETTHHHH--THHHHHHHHHHTCSCBEEEEEEESS
T ss_pred eEEEEeChHhcC--CHHHHHHHHHHHhCCCCeEEEEECh
Confidence 689999999984 24555555555 677889999999
No 158
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=73.02 E-value=28 Score=40.80 Aligned_cols=58 Identities=24% Similarity=0.196 Sum_probs=40.0
Q ss_pred EEEEeChh-hHHHHHHHHHHHhcCCCCcEEEEEcCCCCC-C-CcccccCCCEEEEehhhhhc
Q 001825 780 TLVVCPTS-VLRQWAEELRNKVTSKGSLSVLVYHGSSRT-K-DPCELAKFDVVITTYSIVSM 838 (1009)
Q Consensus 780 TLIVcP~S-LL~QW~~EI~K~~~~~~~LkVlVy~Gs~R~-k-~~~~LakyDVVITTYstLs~ 838 (1009)
.||+.|.. +..|-.+.|. ++...-.+++.++.|.... . ......+-++|++|-+.+.-
T Consensus 78 alvlTPTrELA~QiaEQF~-alGk~l~lK~~vivGG~d~i~qa~~L~~rPHvVvatPGRlad 138 (442)
T KOG0340|consen 78 ALVLTPTRELALQIAEQFI-ALGKLLNLKVSVIVGGTDMIMQAAILSDRPHVVVATPGRLAD 138 (442)
T ss_pred EEEecchHHHHHHHHHHHH-HhcccccceEEEEEccHHHhhhhhhcccCCCeEecCcccccc
Confidence 59999997 7789888885 4454556888877776432 2 22333467899999887743
No 159
>PF06733 DEAD_2: DEAD_2; InterPro: IPR010614 This represents a conserved region within a number of RAD3-like DNA-binding helicases that are seemingly ubiquitous - members include proteins of eukaryotic, bacterial and archaeal origin. RAD3 is involved in nucleotide excision repair, and forms part of the transcription factor TFIIH in yeast [].; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 3CRV_A 3CRW_1 2VL7_A 4A15_A 2VSF_A.
Probab=72.40 E-value=2.6 Score=43.35 Aligned_cols=17 Identities=24% Similarity=0.262 Sum_probs=12.7
Q ss_pred cccCCCEEEEehhhhhc
Q 001825 822 ELAKFDVVITTYSIVSM 838 (1009)
Q Consensus 822 ~LakyDVVITTYstLs~ 838 (1009)
....+||||++|..+-.
T Consensus 116 ~~~~adivi~~y~yl~~ 132 (174)
T PF06733_consen 116 LAKNADIVICNYNYLFD 132 (174)
T ss_dssp CGGG-SEEEEETHHHHS
T ss_pred hcccCCEEEeCHHHHhh
Confidence 34678999999999853
No 160
>PF00385 Chromo: Chromo (CHRromatin Organisation MOdifier) domain; InterPro: IPR023780 The CHROMO (CHRromatin Organization MOdifier) domain [, , , ] is a conserved region of around 60 amino acids, originally identified in Drosophila modifiers of variegation. These are proteins that alter the structure of chromatin to the condensed morphology of heterochromatin, a cytologically visible condition where gene expression is repressed. In one of these proteins, Polycomb, the chromo domain has been shown to be important for chromatin targeting. Proteins that contain a chromo domain appear to fall into 3 classes. The first class includes proteins having an N-terminal chromo domain followed by a region termed the chromo shadow domain, with weak but significant sequence similarity to the N-terminal chromo domain,[], eg. Drosophila and human heterochromatin protein Su(var)205 (HP1). The second class includes proteins with a single chromo domain, eg. Drosophila protein Polycomb (Pc); mammalian modifier 3; human Mi-2 autoantigen and several yeast and Caenorhabditis elegans hypothetical proteins. In the third class paired tandem chromo domains are found, eg. in mammalian DNA-binding/helicase proteins CHD-1 to CHD-4 and yeast protein CHD1. Functional dissections of chromo domain proteins suggests a mechanistic role for chromo domains in targeting chromo domain proteins to specific regions of the nucleus. The mechanism of targeting may involve protein-protein and/or protein/nucleic acid interactions. Hence, several line of evidence show that the HP1 chromo domain is a methyl-specific histone binding module, whereas the chromo domain of two protein components of the drosophila dosage compensation complex, MSL3 and MOF, contain chromo domains that bind to RNA in vitro []. The high resolution structures of HP1-family protein chromo and chromo shadow domain reveal a conserved chromo domain fold motif consisting of three beta strands packed against an alpha helix. The chromo domain fold belongs to the OB (oligonucleotide/oligosaccharide binding)-fold class found in a variety of prokaryotic and eukaryotic nucleic acid binding protein [].; PDB: 2H1E_B 3MWY_W 2DY8_A 1KNE_A 1KNA_A 1Q3L_A 2EE1_A 1AP0_A 1GUW_A 1X3P_A ....
Probab=69.21 E-value=0.72 Score=38.67 Aligned_cols=26 Identities=15% Similarity=-0.226 Sum_probs=21.9
Q ss_pred cchhcccCCCCCccCcchhhccCCCc
Q 001825 581 SLVLGKTLSMNRSACSNHSVALGKPV 606 (1009)
Q Consensus 581 ~~~~~~~~~~~~~~~~~~~~~~~~p~ 606 (1009)
..||+||.|+++.+|+|+........
T Consensus 19 ~~ylVkW~g~~~~~~tWe~~~~l~~~ 44 (55)
T PF00385_consen 19 YEYLVKWKGYPYSENTWEPEENLKNC 44 (55)
T ss_dssp EEEEEEETTSSGGGEEEEEGGGCSSH
T ss_pred EEEEEEECCCCCCCCeEeeHHHHhHh
Confidence 58999999999999999887665533
No 161
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=68.17 E-value=19 Score=46.91 Aligned_cols=58 Identities=17% Similarity=0.149 Sum_probs=41.3
Q ss_pred eeEEEEcccccccchh---hHHHHHHHhcc----cCeEEEEeccCCCCCHHHHHHHHHhhCCCCC
Q 001825 907 WFRVVLDEAQSIKNHR---TQVARACWGLR----AKRRWCLSGTPIQNAIDDLYSYFRFLRYDPF 964 (1009)
Q Consensus 907 W~RVILDEAH~IKN~~---Sq~skAl~~L~----Ak~RW~LTGTPIQNsL~DLySLLrFLrp~pf 964 (1009)
-.++|+||||.+..+. -.-|+.+..|+ ..--++||||=...--.|+...|+.-++..+
T Consensus 386 lal~vIDEAHCVSqWgHdFRp~Yk~l~~l~~~~~~vP~iALTATAT~~v~~DIi~~L~l~~~~~~ 450 (941)
T KOG0351|consen 386 LALFVIDEAHCVSQWGHDFRPSYKRLGLLRIRFPGVPFIALTATATERVREDVIRSLGLRNPELF 450 (941)
T ss_pred eEEEEecHHHHhhhhcccccHHHHHHHHHHhhCCCCCeEEeehhccHHHHHHHHHHhCCCCccee
Confidence 5689999999886532 12233443332 2346899999999999999999988777655
No 162
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=67.98 E-value=96 Score=39.44 Aligned_cols=41 Identities=22% Similarity=0.199 Sum_probs=26.6
Q ss_pred chhHHHHHHHHHhccccCCCCcccEEEcCCCchHHHHHHHHHHH
Q 001825 668 LRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILK 711 (1009)
Q Consensus 668 rPHQkegV~WMlqrE~s~~~~rGGILADEMGLGKTVqaIALIl~ 711 (1009)
.+|=++.+..++.+.+- ...-||.-..|.|||..+.+++..
T Consensus 20 Qe~vv~~L~~aI~~grl---~HAyLF~GPpGvGKTTlAriLAK~ 60 (702)
T PRK14960 20 QNHVSRALSSALERGRL---HHAYLFTGTRGVGKTTIARILAKC 60 (702)
T ss_pred cHHHHHHHHHHHHcCCC---CeEEEEECCCCCCHHHHHHHHHHH
Confidence 44555566665554321 134489999999999888777643
No 163
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=67.24 E-value=15 Score=40.23 Aligned_cols=20 Identities=30% Similarity=0.263 Sum_probs=16.3
Q ss_pred ccEEEcCCCchHHHHHHHHH
Q 001825 690 GGILADDQGLGKTISTIALI 709 (1009)
Q Consensus 690 GGILADEMGLGKTVqaIALI 709 (1009)
.-||.-..|.|||..+-++.
T Consensus 44 ~vll~GppGtGKTtlA~~ia 63 (261)
T TIGR02881 44 HMIFKGNPGTGKTTVARILG 63 (261)
T ss_pred eEEEEcCCCCCHHHHHHHHH
Confidence 35789999999999886665
No 164
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=65.38 E-value=7.2 Score=47.66 Aligned_cols=35 Identities=23% Similarity=0.233 Sum_probs=26.5
Q ss_pred chhHHHHHHHHHhccccCCCCcccEEEcCCCchHHHHHHHHH
Q 001825 668 LRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 709 (1009)
Q Consensus 668 rPHQkegV~WMlqrE~s~~~~rGGILADEMGLGKTVqaIALI 709 (1009)
.|-|+.++-.|+++ +-++-|--.|-|||+.-+.=|
T Consensus 160 t~iq~~aipvfl~~-------r~~lAcapTGsgKtlaf~~Pi 194 (593)
T KOG0344|consen 160 TPIQKQAIPVFLEK-------RDVLACAPTGSGKTLAFNLPI 194 (593)
T ss_pred Ccccchhhhhhhcc-------cceEEeccCCCcchhhhhhHH
Confidence 57789999999875 557778889999976544333
No 165
>cd00024 CHROMO Chromatin organization modifier (chromo) domain is a conserved region of around 50 amino acids found in a variety of chromosomal proteins, which appear to play a role in the functional organization of the eukaryotic nucleus. Experimental evidence implicates the chromo domain in the binding activity of these proteins to methylated histone tails and maybe RNA. May occur as single instance, in a tandem arrangement or followd by a related "chromo shadow" domain.
Probab=64.92 E-value=3.2 Score=34.30 Aligned_cols=26 Identities=12% Similarity=-0.208 Sum_probs=21.4
Q ss_pred CccchhcccCCCCCccCcchhhccCC
Q 001825 579 NQSLVLGKTLSMNRSACSNHSVALGK 604 (1009)
Q Consensus 579 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 604 (1009)
....||+||.|+++..|+|+......
T Consensus 18 ~~~~y~VkW~g~~~~~~tWe~~~~l~ 43 (55)
T cd00024 18 GEYEYLVKWKGYSYSEDTWEPEENLE 43 (55)
T ss_pred CcEEEEEEECCCCCccCccccHHHhC
Confidence 46789999999999999997765433
No 166
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=62.08 E-value=96 Score=36.18 Aligned_cols=41 Identities=15% Similarity=0.175 Sum_probs=26.0
Q ss_pred HHHHHHHHHhccccCCCCcccEEEcCCCchHHHHHHHHHHH
Q 001825 671 QRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILK 711 (1009)
Q Consensus 671 QkegV~WMlqrE~s~~~~rGGILADEMGLGKTVqaIALIl~ 711 (1009)
|..++..+......+.....-++.-+.|+|||..+..++..
T Consensus 28 h~~a~~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~lA~~ 68 (351)
T PRK09112 28 HEEAEAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANH 68 (351)
T ss_pred cHHHHHHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHHHHH
Confidence 34444544444333322235677889999999998877754
No 167
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=61.35 E-value=40 Score=42.34 Aligned_cols=72 Identities=19% Similarity=0.154 Sum_probs=52.0
Q ss_pred cCCCchhHHHHHHHHHhccccCCCCcccEEEcCCCchHHHHHHHHHHHcCCCCCCCcchhhhhhhhcccccccccccccc
Q 001825 664 AVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGIQVNG 743 (1009)
Q Consensus 664 kv~LrPHQkegV~WMlqrE~s~~~~rGGILADEMGLGKTVqaIALIl~~r~~~~~~~~~~k~~~e~l~~de~~d~~~~~~ 743 (1009)
...|.++|..++.-+.+....+. +..+|---.|.|||+.+.+++...
T Consensus 10 ~~~~~~~Q~~ai~~l~~~~~~~~--~~~ll~Gl~gs~ka~lia~l~~~~------------------------------- 56 (652)
T PRK05298 10 PYKPAGDQPQAIEELVEGIEAGE--KHQTLLGVTGSGKTFTMANVIARL------------------------------- 56 (652)
T ss_pred CCCCChHHHHHHHHHHHhhhcCC--CcEEEEcCCCcHHHHHHHHHHHHh-------------------------------
Confidence 35678899999988876653221 123566677999999876555210
Q ss_pred ccccccccccccccCCCCCCccchhhhhhcCCCCCcEEEEeChh-hHHHHHHHHHHHhc
Q 001825 744 LDLVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTS-VLRQWAEELRNKVT 801 (1009)
Q Consensus 744 ~~~~k~~~~~C~~~s~~~s~~s~~~~~q~~~rpa~~TLIVcP~S-LL~QW~~EI~K~~~ 801 (1009)
.+++|||+|.. ...||.+++..+++
T Consensus 57 ---------------------------------~r~vLIVt~~~~~A~~l~~dL~~~~~ 82 (652)
T PRK05298 57 ---------------------------------QRPTLVLAHNKTLAAQLYSEFKEFFP 82 (652)
T ss_pred ---------------------------------CCCEEEEECCHHHHHHHHHHHHHhcC
Confidence 13689999995 67899999999987
No 168
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=60.61 E-value=1.9e+02 Score=37.11 Aligned_cols=57 Identities=11% Similarity=0.061 Sum_probs=33.4
Q ss_pred ceeEEEEcccccccchhhHHHHHHHhc---ccCeEEEEeccCCCCCHHHHHHHHHhhCCCCC
Q 001825 906 GWFRVVLDEAQSIKNHRTQVARACWGL---RAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPF 964 (1009)
Q Consensus 906 ~W~RVILDEAH~IKN~~Sq~skAl~~L---~Ak~RW~LTGTPIQNsL~DLySLLrFLrp~pf 964 (1009)
.+.+|||||+|++... .....++.| ...-+++|+.|=..+-+.-+.+-+.-++..++
T Consensus 119 k~KVIIIDEad~Ls~~--A~NALLKtLEEPp~~v~fILaTtd~~kL~~TIrSRC~~f~f~~L 178 (709)
T PRK08691 119 KYKVYIIDEVHMLSKS--AFNAMLKTLEEPPEHVKFILATTDPHKVPVTVLSRCLQFVLRNM 178 (709)
T ss_pred CcEEEEEECccccCHH--HHHHHHHHHHhCCCCcEEEEEeCCccccchHHHHHHhhhhcCCC
Confidence 4678999999998532 222334444 34557888777555555555554444443344
No 169
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=58.88 E-value=37 Score=37.51 Aligned_cols=109 Identities=16% Similarity=0.166 Sum_probs=67.6
Q ss_pred cCCCchhHHHHHHHHHhccccCCCCcccEEEcCCCchHHHHHHHHHHHcCCCCCCCcchhhhhhhhcccccccccccccc
Q 001825 664 AVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGIQVNG 743 (1009)
Q Consensus 664 kv~LrPHQkegV~WMlqrE~s~~~~rGGILADEMGLGKTVqaIALIl~~r~~~~~~~~~~k~~~e~l~~de~~d~~~~~~ 743 (1009)
.+-|||-|.+-+..|..-. ...+.++=--||-|||-..+=+++.... ++
T Consensus 21 ~iliR~~Q~~ia~~mi~~~----~~~n~v~QlnMGeGKTsVI~Pmla~~LA----------------------dg----- 69 (229)
T PF12340_consen 21 NILIRPVQVEIAREMISPP----SGKNSVMQLNMGEGKTSVIVPMLALALA----------------------DG----- 69 (229)
T ss_pred CceeeHHHHHHHHHHhCCC----CCCCeEeeecccCCccchHHHHHHHHHc----------------------CC-----
Confidence 3558999999999998632 2256788889999999765444332110 00
Q ss_pred ccccccccccccccCCCCCCccchhhhhhcCCCCCcEEEEeChhhHHHHHHHHHHHhcCCCCcEEEEEcCCCCCC-Cccc
Q 001825 744 LDLVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTK-DPCE 822 (1009)
Q Consensus 744 ~~~~k~~~~~C~~~s~~~s~~s~~~~~q~~~rpa~~TLIVcP~SLL~QW~~EI~K~~~~~~~LkVlVy~Gs~R~k-~~~~ 822 (1009)
.+=+-+|||++++.|-.+-++..+..--.-+++.+.=+.... +...
T Consensus 70 ---------------------------------~~LvrviVpk~Ll~q~~~~L~~~lg~l~~r~i~~lpFsR~~~~~~~~ 116 (229)
T PF12340_consen 70 ---------------------------------SRLVRVIVPKALLEQMRQMLRSRLGGLLNRRIYHLPFSRSTPLTPET 116 (229)
T ss_pred ---------------------------------CcEEEEEcCHHHHHHHHHHHHHHHHHHhCCeeEEecccCCCCCCHHH
Confidence 012578999999999999999887632223444333222222 1111
Q ss_pred -----------ccCCCEEEEehhhh
Q 001825 823 -----------LAKFDVVITTYSIV 836 (1009)
Q Consensus 823 -----------LakyDVVITTYstL 836 (1009)
...-.|++++-+.+
T Consensus 117 ~~~~~~l~~~~~~~~gill~~PEhi 141 (229)
T PF12340_consen 117 LEKIRQLLEECMRSGGILLATPEHI 141 (229)
T ss_pred HHHHHHHHHHHHHcCCEEEeChHHH
Confidence 13556888887655
No 170
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=58.48 E-value=4.7 Score=45.30 Aligned_cols=42 Identities=26% Similarity=0.232 Sum_probs=30.3
Q ss_pred CCchhHHHHHHHHHhccccCCCCcccEEEcCCCchHHHHHHHHHH
Q 001825 666 PLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALIL 710 (1009)
Q Consensus 666 ~LrPHQkegV~WMlqrE~s~~~~rGGILADEMGLGKTVqaIALIl 710 (1009)
+.||.|++-..-+.+....+ ..+|+--..|.|||+..|..++
T Consensus 8 ~~r~~Q~~~m~~v~~~~~~~---~~~~~eapTGtGKTl~~L~~al 49 (289)
T smart00488 8 EPYPIQYEFMEELKRVLDRG---KIGILESPTGTGKTLSLLCLTL 49 (289)
T ss_pred CCCHHHHHHHHHHHHHHHcC---CcEEEECCCCcchhHHHHHHHH
Confidence 34999999766666554433 3467777899999999886654
No 171
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=58.48 E-value=4.7 Score=45.30 Aligned_cols=42 Identities=26% Similarity=0.232 Sum_probs=30.3
Q ss_pred CCchhHHHHHHHHHhccccCCCCcccEEEcCCCchHHHHHHHHHH
Q 001825 666 PLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALIL 710 (1009)
Q Consensus 666 ~LrPHQkegV~WMlqrE~s~~~~rGGILADEMGLGKTVqaIALIl 710 (1009)
+.||.|++-..-+.+....+ ..+|+--..|.|||+..|..++
T Consensus 8 ~~r~~Q~~~m~~v~~~~~~~---~~~~~eapTGtGKTl~~L~~al 49 (289)
T smart00489 8 EPYPIQYEFMEELKRVLDRG---KIGILESPTGTGKTLSLLCLTL 49 (289)
T ss_pred CCCHHHHHHHHHHHHHHHcC---CcEEEECCCCcchhHHHHHHHH
Confidence 34999999766666554433 3467777899999999886654
No 172
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=57.67 E-value=45 Score=41.92 Aligned_cols=41 Identities=20% Similarity=0.251 Sum_probs=28.9
Q ss_pred CcEEEEeChh-hHHHHHHHHHHHh-cC-CCCcEEEEEcCCCCCC
Q 001825 778 AGTLVVCPTS-VLRQWAEELRNKV-TS-KGSLSVLVYHGSSRTK 818 (1009)
Q Consensus 778 ~~TLIVcP~S-LL~QW~~EI~K~~-~~-~~~LkVlVy~Gs~R~k 818 (1009)
+++||++|.. |..|+.++|.... .. ...+++.+..|.....
T Consensus 47 ~rvlIstpT~~Lq~Ql~~~l~~l~~~~l~~~i~~~~lkGr~nYl 90 (636)
T TIGR03117 47 QKIAIAVPTLALMGQLWSELERLTAEGLAGPVQAGFFPGSQEFV 90 (636)
T ss_pred ceEEEECCcHHHHHHHHHHHHHHHHhhcCCCeeEEEEECCcccc
Confidence 4689999985 7799999987664 11 2357777777766543
No 173
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=56.76 E-value=1.2e+02 Score=39.95 Aligned_cols=40 Identities=15% Similarity=0.160 Sum_probs=24.9
Q ss_pred ceeEEEEcccccccchhhHHHHHHHhc---ccCeEEEEeccCCCC
Q 001825 906 GWFRVVLDEAQSIKNHRTQVARACWGL---RAKRRWCLSGTPIQN 947 (1009)
Q Consensus 906 ~W~RVILDEAH~IKN~~Sq~skAl~~L---~Ak~RW~LTGTPIQN 947 (1009)
+|..+||||+|++.. ......++.| ....|++|..|-...
T Consensus 119 k~KViIIDEAh~LT~--eAqNALLKtLEEPP~~vrFILaTTe~~k 161 (944)
T PRK14949 119 RFKVYLIDEVHMLSR--SSFNALLKTLEEPPEHVKFLLATTDPQK 161 (944)
T ss_pred CcEEEEEechHhcCH--HHHHHHHHHHhccCCCeEEEEECCCchh
Confidence 577899999999942 2222233444 355678887555443
No 174
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=55.96 E-value=1.9e+02 Score=35.58 Aligned_cols=57 Identities=12% Similarity=0.105 Sum_probs=32.7
Q ss_pred ceeEEEEcccccccchhhHHHHHHHhc---ccCeEEEEeccCCCCCHHHHHHHHHhhCCCCC
Q 001825 906 GWFRVVLDEAQSIKNHRTQVARACWGL---RAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPF 964 (1009)
Q Consensus 906 ~W~RVILDEAH~IKN~~Sq~skAl~~L---~Ak~RW~LTGTPIQNsL~DLySLLrFLrp~pf 964 (1009)
+|..+|+||+|++-... ....++.| ...-+++|..|-.+.-+.-|.+-+..+...++
T Consensus 119 ~~kV~iIDE~~~ls~~a--~naLLk~LEepp~~~~fIlattd~~kl~~tI~SRc~~~~f~~l 178 (509)
T PRK14958 119 RFKVYLIDEVHMLSGHS--FNALLKTLEEPPSHVKFILATTDHHKLPVTVLSRCLQFHLAQL 178 (509)
T ss_pred CcEEEEEEChHhcCHHH--HHHHHHHHhccCCCeEEEEEECChHhchHHHHHHhhhhhcCCC
Confidence 57889999999985422 22233333 34566777666555555445544444444444
No 175
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=55.94 E-value=1.2e+02 Score=37.10 Aligned_cols=41 Identities=20% Similarity=0.089 Sum_probs=25.6
Q ss_pred chhHHHHHHHHHhccccCCCCcccEEEcCCCchHHHHHHHHHHH
Q 001825 668 LRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILK 711 (1009)
Q Consensus 668 rPHQkegV~WMlqrE~s~~~~rGGILADEMGLGKTVqaIALIl~ 711 (1009)
.+|-...+.+++...+- +..-||.-..|.|||..|..++..
T Consensus 23 Qe~iv~~L~~~i~~~ri---~ha~Lf~GP~GtGKTTlAriLAk~ 63 (484)
T PRK14956 23 QDLAIGALQNALKSGKI---GHAYIFFGPRGVGKTTIARILAKR 63 (484)
T ss_pred hHHHHHHHHHHHHcCCC---CeEEEEECCCCCCHHHHHHHHHHh
Confidence 34444555555543221 122488999999999988777643
No 176
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair]
Probab=54.19 E-value=1.1e+02 Score=40.03 Aligned_cols=40 Identities=20% Similarity=0.184 Sum_probs=29.3
Q ss_pred ccccceeEEEEcccccccchhhHHHHHHHhcccCeEEEEeccCCC
Q 001825 902 LAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQ 946 (1009)
Q Consensus 902 L~~i~W~RVILDEAH~IKN~~Sq~skAl~~L~Ak~RW~LTGTPIQ 946 (1009)
+....||++|+|||-.|--+- .+.-|.--+|++|-|-+.|
T Consensus 792 f~~R~FD~cIiDEASQI~lP~-----~LgPL~~s~kFVLVGDh~Q 831 (1100)
T KOG1805|consen 792 FVNRQFDYCIIDEASQILLPL-----CLGPLSFSNKFVLVGDHYQ 831 (1100)
T ss_pred hhccccCEEEEccccccccch-----hhhhhhhcceEEEeccccc
Confidence 556679999999998875432 3344567788999887765
No 177
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=54.05 E-value=1.8e+02 Score=33.84 Aligned_cols=21 Identities=29% Similarity=0.351 Sum_probs=17.3
Q ss_pred cEEEcCCCchHHHHHHHHHHH
Q 001825 691 GILADDQGLGKTISTIALILK 711 (1009)
Q Consensus 691 GILADEMGLGKTVqaIALIl~ 711 (1009)
-||.-+.|.|||..+.+++..
T Consensus 41 ~L~~Gp~G~GKTtla~~la~~ 61 (363)
T PRK14961 41 WLLSGTRGVGKTTIARLLAKS 61 (363)
T ss_pred EEEecCCCCCHHHHHHHHHHH
Confidence 378899999999988877643
No 178
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=53.72 E-value=29 Score=43.79 Aligned_cols=43 Identities=30% Similarity=0.353 Sum_probs=34.7
Q ss_pred CCchhHHHHHHHHHhccccCCCCcccEEEcCCCchHHHHHHHHHHH
Q 001825 666 PLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILK 711 (1009)
Q Consensus 666 ~LrPHQkegV~WMlqrE~s~~~~rGGILADEMGLGKTVqaIALIl~ 711 (1009)
+.||.|++-..-+.+....+ ..++|=-..|.|||+.+|+..+.
T Consensus 10 ~~y~~Q~~~m~~v~~~l~~~---~~~llEsPTGtGKTlslL~~aL~ 52 (705)
T TIGR00604 10 KIYPEQRSYMRDLKRSLDRG---DEAILEMPSGTGKTISLLSLILA 52 (705)
T ss_pred CCCHHHHHHHHHHHHHhccC---CceEEeCCCCCCccHHHHHHHHH
Confidence 36999999988888766544 45788888999999999888765
No 179
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=53.37 E-value=91 Score=32.81 Aligned_cols=57 Identities=18% Similarity=0.300 Sum_probs=32.6
Q ss_pred EEEEcccccccchh---hHHHHHHHhc-ccCeEEEEeccCCCCCH----HHHHHHHH---hhCCCCCC
Q 001825 909 RVVLDEAQSIKNHR---TQVARACWGL-RAKRRWCLSGTPIQNAI----DDLYSYFR---FLRYDPFA 965 (1009)
Q Consensus 909 RVILDEAH~IKN~~---Sq~skAl~~L-~Ak~RW~LTGTPIQNsL----~DLySLLr---FLrp~pf~ 965 (1009)
.|||||+|.+.... ......+..+ ..+.++++|+|+..+.+ .+|.+.+. .+...++.
T Consensus 93 lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L~~r~~~~~~i~l~~l~ 160 (226)
T TIGR03420 93 LVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRTRLAWGLVFQLPPLS 160 (226)
T ss_pred EEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHHHHHHhcCeeEecCCCC
Confidence 59999999986532 2333333333 23457888888544322 55665554 23445554
No 180
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=53.36 E-value=21 Score=42.66 Aligned_cols=61 Identities=15% Similarity=0.161 Sum_probs=37.5
Q ss_pred cEEEEeChh-hHHHHHHHHHHHhcC-CCCcEEEEEcCCC-CCC-CcccccCCCEEEEehhhhhcc
Q 001825 779 GTLVVCPTS-VLRQWAEELRNKVTS-KGSLSVLVYHGSS-RTK-DPCELAKFDVVITTYSIVSME 839 (1009)
Q Consensus 779 ~TLIVcP~S-LL~QW~~EI~K~~~~-~~~LkVlVy~Gs~-R~k-~~~~LakyDVVITTYstLs~e 839 (1009)
..+|+||.- |..|-...|.+.... ...++++-+..+. ... ........|||++|-..+-..
T Consensus 95 sa~iLvPTkEL~qQvy~viekL~~~c~k~lr~~nl~s~~sdsv~~~~L~d~pdIvV~TP~~ll~~ 159 (569)
T KOG0346|consen 95 SAVILVPTKELAQQVYKVIEKLVEYCSKDLRAINLASSMSDSVNSVALMDLPDIVVATPAKLLRH 159 (569)
T ss_pred eeEEEechHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccchHHHHHHHccCCCeEEeChHHHHHH
Confidence 368999986 889999998876542 1234444443221 111 123345789999998877544
No 181
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=53.30 E-value=1.5e+02 Score=36.14 Aligned_cols=41 Identities=22% Similarity=0.214 Sum_probs=27.4
Q ss_pred chhHHHHHHHHHhccccCCCCcccEEEcCCCchHHHHHHHHHHH
Q 001825 668 LRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILK 711 (1009)
Q Consensus 668 rPHQkegV~WMlqrE~s~~~~rGGILADEMGLGKTVqaIALIl~ 711 (1009)
.+|-...+..++...+- +..-||.-..|.|||..|-+++..
T Consensus 19 q~~i~~~L~~~i~~~~l---~~~~Lf~GPpGtGKTTlA~~lA~~ 59 (472)
T PRK14962 19 QDHVKKLIINALKKNSI---SHAYIFAGPRGTGKTTVARILAKS 59 (472)
T ss_pred cHHHHHHHHHHHHcCCC---CeEEEEECCCCCCHHHHHHHHHHH
Confidence 45556666666654321 123488999999999988777643
No 182
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=53.27 E-value=56 Score=42.76 Aligned_cols=49 Identities=16% Similarity=0.063 Sum_probs=37.7
Q ss_pred eeEEEEcccccccch-hhHHHHHHHhcccCeEEEEeccCCCCCHHHHHHHHH
Q 001825 907 WFRVVLDEAQSIKNH-RTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFR 957 (1009)
Q Consensus 907 W~RVILDEAH~IKN~-~Sq~skAl~~L~Ak~RW~LTGTPIQNsL~DLySLLr 957 (1009)
..+||+||.|.|.+. ....+..+..|-.---++||+| ++++..++..++
T Consensus 633 IRyiIfDEVH~iG~~ed~l~~Eqll~li~CP~L~LSAT--igN~~l~qkWln 682 (1330)
T KOG0949|consen 633 IRYIIFDEVHLIGNEEDGLLWEQLLLLIPCPFLVLSAT--IGNPNLFQKWLN 682 (1330)
T ss_pred ceEEEechhhhccccccchHHHHHHHhcCCCeeEEecc--cCCHHHHHHHHH
Confidence 468999999999985 4666666666666667999999 777777776655
No 183
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=52.80 E-value=1.5e+02 Score=33.09 Aligned_cols=48 Identities=23% Similarity=0.283 Sum_probs=28.4
Q ss_pred CCCCcccCCCchhHHHHHHHHHhccccCCCCcccEE-EcCCCchHHHHHHHHH
Q 001825 658 APDGVLAVPLLRHQRIALSWMVQKETSSLHCSGGIL-ADDQGLGKTISTIALI 709 (1009)
Q Consensus 658 ~P~glLkv~LrPHQkegV~WMlqrE~s~~~~rGGIL-ADEMGLGKTVqaIALI 709 (1009)
.|..+-.+-..++.+..+...+++.. . .+.+| .-+.|.|||-.+-++.
T Consensus 16 rP~~~~~~~~~~~~~~~l~~~~~~~~--~--~~~lll~G~~G~GKT~la~~l~ 64 (316)
T PHA02544 16 RPSTIDECILPAADKETFKSIVKKGR--I--PNMLLHSPSPGTGKTTVAKALC 64 (316)
T ss_pred CCCcHHHhcCcHHHHHHHHHHHhcCC--C--CeEEEeeCcCCCCHHHHHHHHH
Confidence 34333334455666666655554322 1 34555 7999999998877665
No 184
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=50.82 E-value=3e+02 Score=28.29 Aligned_cols=42 Identities=14% Similarity=0.059 Sum_probs=24.7
Q ss_pred HHHHHHHHHhccccCCCCcccEEEcCCCchHHHHHHHHHHHc
Q 001825 671 QRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKE 712 (1009)
Q Consensus 671 QkegV~WMlqrE~s~~~~rGGILADEMGLGKTVqaIALIl~~ 712 (1009)
|...+..+.........+..=||.-.-|.||+..+.+++...
T Consensus 2 q~~~~~~L~~~~~~~~l~ha~L~~G~~g~gk~~~a~~~a~~l 43 (162)
T PF13177_consen 2 QEEIIELLKNLIKSGRLPHALLFHGPSGSGKKTLALAFARAL 43 (162)
T ss_dssp -HHHHHHHHHHHHCTC--SEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHcCCcceeEEEECCCCCCHHHHHHHHHHHH
Confidence 444444444333332222234777788999999999998654
No 185
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=50.68 E-value=1.3e+02 Score=39.34 Aligned_cols=22 Identities=27% Similarity=0.386 Sum_probs=17.8
Q ss_pred ccEEEcCCCchHHHHHHHHHHH
Q 001825 690 GGILADDQGLGKTISTIALILK 711 (1009)
Q Consensus 690 GGILADEMGLGKTVqaIALIl~ 711 (1009)
-.||+-+.|.|||-|.=-+++.
T Consensus 67 vvii~getGsGKTTqlP~~lle 88 (845)
T COG1643 67 VVIIVGETGSGKTTQLPQFLLE 88 (845)
T ss_pred EEEEeCCCCCChHHHHHHHHHh
Confidence 4689999999999987666644
No 186
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]
Probab=50.56 E-value=47 Score=43.14 Aligned_cols=23 Identities=26% Similarity=0.293 Sum_probs=18.7
Q ss_pred cccEEEcCCCchHHHHHHHHHHH
Q 001825 689 SGGILADDQGLGKTISTIALILK 711 (1009)
Q Consensus 689 rGGILADEMGLGKTVqaIALIl~ 711 (1009)
+..|++-..+-|||+.+=-+++.
T Consensus 241 ~nliys~Pts~gktlvaeilml~ 263 (1008)
T KOG0950|consen 241 KNLIYSLPTSAGKTLVAEILMLR 263 (1008)
T ss_pred cceEEeCCCccchHHHHHHHHHH
Confidence 56899999999999988666654
No 187
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=49.18 E-value=32 Score=41.34 Aligned_cols=44 Identities=20% Similarity=0.185 Sum_probs=34.0
Q ss_pred CchhHHHHHHHHHhccc-----cCCCCcccEEEcCCCchHHHHHHHHHH
Q 001825 667 LLRHQRIALSWMVQKET-----SSLHCSGGILADDQGLGKTISTIALIL 710 (1009)
Q Consensus 667 LrPHQkegV~WMlqrE~-----s~~~~rGGILADEMGLGKTVqaIALIl 710 (1009)
.....++++.|.+.+.. ....++|.+|.--.|.|||+.+-|+..
T Consensus 250 ~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~ 298 (494)
T COG0464 250 AKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVAL 298 (494)
T ss_pred HHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHh
Confidence 45677888888887765 223457899999999999999887774
No 188
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=48.44 E-value=45 Score=37.49 Aligned_cols=21 Identities=19% Similarity=0.275 Sum_probs=16.8
Q ss_pred ccEEEcCCCchHHHHHHHHHH
Q 001825 690 GGILADDQGLGKTISTIALIL 710 (1009)
Q Consensus 690 GGILADEMGLGKTVqaIALIl 710 (1009)
+-+|--+.|.|||..|.++..
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~ 80 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQ 80 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHH
Confidence 467788999999998876653
No 189
>COG4646 DNA methylase [Transcription / DNA replication, recombination, and repair]
Probab=48.14 E-value=11 Score=45.17 Aligned_cols=42 Identities=24% Similarity=0.442 Sum_probs=32.8
Q ss_pred cCeEEEEeccCCCCCHHHHHHHHHhhCCCCCC-----ChHHHHhhhc
Q 001825 934 AKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFA-----VYKSFCSMIK 975 (1009)
Q Consensus 934 Ak~RW~LTGTPIQNsL~DLySLLrFLrp~pf~-----~~~~F~~~f~ 975 (1009)
.++..++|||||.|.+.+.|++-|+|.++-+. .+..|.+.|.
T Consensus 473 G~~L~l~sgTpi~ntlgem~~vqRyl~~~al~ergl~~fd~wast~g 519 (637)
T COG4646 473 GRALVLASGTPITNTLGEMFSVQRYLGAGALYERGLHEFDAWASTFG 519 (637)
T ss_pred CCeEEecCCCchhhhHHhhhhhhhhcCccHHHHhhhhhhhhHHHHHH
Confidence 45668899999999999999999999997752 2445555554
No 190
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=47.70 E-value=88 Score=37.08 Aligned_cols=23 Identities=13% Similarity=0.300 Sum_probs=18.5
Q ss_pred cccEEEcCCCchHHHHHHHHHHH
Q 001825 689 SGGILADDQGLGKTISTIALILK 711 (1009)
Q Consensus 689 rGGILADEMGLGKTVqaIALIl~ 711 (1009)
.+-|+.-..|.|||..+.++...
T Consensus 37 ha~Lf~Gp~G~GKt~lA~~lA~~ 59 (394)
T PRK07940 37 HAWLFTGPPGSGRSVAARAFAAA 59 (394)
T ss_pred eEEEEECCCCCcHHHHHHHHHHH
Confidence 34568889999999999888754
No 191
>PF13173 AAA_14: AAA domain
Probab=45.68 E-value=22 Score=34.56 Aligned_cols=40 Identities=13% Similarity=0.065 Sum_probs=26.0
Q ss_pred eEEEEcccccccchhhHHHHHHHhcccCeEEEEeccCCCCC
Q 001825 908 FRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNA 948 (1009)
Q Consensus 908 ~RVILDEAH~IKN~~Sq~skAl~~L~Ak~RW~LTGTPIQNs 948 (1009)
.+||+||+|++++.....-..+. -....++++||.-....
T Consensus 63 ~~i~iDEiq~~~~~~~~lk~l~d-~~~~~~ii~tgS~~~~l 102 (128)
T PF13173_consen 63 KYIFIDEIQYLPDWEDALKFLVD-NGPNIKIILTGSSSSLL 102 (128)
T ss_pred cEEEEehhhhhccHHHHHHHHHH-hccCceEEEEccchHHH
Confidence 46999999999864433333222 22456999999855443
No 192
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=45.44 E-value=14 Score=46.79 Aligned_cols=42 Identities=17% Similarity=0.165 Sum_probs=24.7
Q ss_pred CCCchhHHHHHHHHHhccccCCCC-cccEEEc-CCCchHHHHHH
Q 001825 665 VPLLRHQRIALSWMVQKETSSLHC-SGGILAD-DQGLGKTISTI 706 (1009)
Q Consensus 665 v~LrPHQkegV~WMlqrE~s~~~~-rGGILAD-EMGLGKTVqaI 706 (1009)
..-|+-|.+-..-+.+........ .+-++.. ..|.|||+--|
T Consensus 24 ~e~R~~Q~~M~~~V~~al~~~~~~~~~~lviEAgTGtGKTlaYL 67 (697)
T PRK11747 24 FIPRAGQRQMIAEVAKTLAGEYLKDGRILVIEAGTGVGKTLSYL 67 (697)
T ss_pred CCcCHHHHHHHHHHHHHHhcccccccceEEEECCCCcchhHHHH
Confidence 456899998666555443321000 1223444 79999998765
No 193
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=44.12 E-value=3.1e+02 Score=33.72 Aligned_cols=40 Identities=18% Similarity=0.073 Sum_probs=25.7
Q ss_pred chhHHHHHHHHHhccccCCCCcccEEEcCCCchHHHHHHHHHH
Q 001825 668 LRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALIL 710 (1009)
Q Consensus 668 rPHQkegV~WMlqrE~s~~~~rGGILADEMGLGKTVqaIALIl 710 (1009)
.+|-.+.+..++...+- +..-||.-..|.|||..+..+..
T Consensus 18 Qe~vv~~L~~a~~~~ri---~ha~Lf~Gp~G~GKTT~ArilAk 57 (491)
T PRK14964 18 QDVLVRILRNAFTLNKI---PQSILLVGASGVGKTTCARIISL 57 (491)
T ss_pred cHHHHHHHHHHHHcCCC---CceEEEECCCCccHHHHHHHHHH
Confidence 34555555555543322 24568889999999998876653
No 194
>PHA00673 acetyltransferase domain containing protein
Probab=44.08 E-value=35 Score=35.49 Aligned_cols=45 Identities=13% Similarity=0.051 Sum_probs=36.9
Q ss_pred ceeEEEEcccccccchhhHHHHHHHhc---ccCeEEEEeccCCCCCHH
Q 001825 906 GWFRVVLDEAQSIKNHRTQVARACWGL---RAKRRWCLSGTPIQNAID 950 (1009)
Q Consensus 906 ~W~RVILDEAH~IKN~~Sq~skAl~~L---~Ak~RW~LTGTPIQNsL~ 950 (1009)
..+-|.|++.|+=+.-..++.+.+... +.-++|.+||||-.|.++
T Consensus 87 ~Ie~l~V~~~~RGqGIG~~Ll~~A~~~Ar~~Gc~~lyis~~p~~~tv~ 134 (154)
T PHA00673 87 TTESIFVAAAHRPGGAGMALLRATEALARDLGATGLYVSGPTEGRLVQ 134 (154)
T ss_pred EEEEEEEChhccCCCHHHHHHHHHHHHHHHCCCCEEEEecCCCccchH
Confidence 356799999999888888777766544 567899999999999975
No 195
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=43.76 E-value=2.1e+02 Score=37.73 Aligned_cols=42 Identities=21% Similarity=0.368 Sum_probs=31.7
Q ss_pred cCCCchhHHHHHHHHHhccccCCCCcccEEEcCCCchHHHHHHHHHHHc
Q 001825 664 AVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKE 712 (1009)
Q Consensus 664 kv~LrPHQkegV~WMlqrE~s~~~~rGGILADEMGLGKTVqaIALIl~~ 712 (1009)
+.|-+.++..-+..+.+. .--++.-|.|.|||.|+--+|+..
T Consensus 171 ~LPa~~~r~~Il~~i~~~-------qVvvIsGeTGcGKTTQvpQfiLd~ 212 (924)
T KOG0920|consen 171 SLPAYKMRDTILDAIEEN-------QVVVISGETGCGKTTQVPQFILDE 212 (924)
T ss_pred hCccHHHHHHHHHHHHhC-------ceEEEeCCCCCCchhhhhHHHHHH
Confidence 344567777777777654 336788899999999999999763
No 196
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=43.18 E-value=33 Score=40.96 Aligned_cols=108 Identities=19% Similarity=0.116 Sum_probs=64.7
Q ss_pred cEEEEeChh-hHHHHHHHHHHHhcCCCCcEEE-EEcCCCCCCCccccc-CCCEEEEehhhhhcccCCCCCCCchhHHHHh
Q 001825 779 GTLVVCPTS-VLRQWAEELRNKVTSKGSLSVL-VYHGSSRTKDPCELA-KFDVVITTYSIVSMEVPKQPLGDKEDEEEKM 855 (1009)
Q Consensus 779 ~TLIVcP~S-LL~QW~~EI~K~~~~~~~LkVl-Vy~Gs~R~k~~~~La-kyDVVITTYstLs~ev~k~~l~d~dde~ek~ 855 (1009)
++||+.|.. |..|-.+=.+..-. .-.++.. +++|.........+. .-||||.|-..+.--..
T Consensus 92 RalilsptreLa~qtlkvvkdlgr-gt~lr~s~~~ggD~~eeqf~~l~~npDii~ATpgr~~h~~v-------------- 156 (529)
T KOG0337|consen 92 RALILSPTRELALQTLKVVKDLGR-GTKLRQSLLVGGDSIEEQFILLNENPDIIIATPGRLLHLGV-------------- 156 (529)
T ss_pred ceeeccCcHHHHHHHHHHHHHhcc-ccchhhhhhcccchHHHHHHHhccCCCEEEecCceeeeeeh--------------
Confidence 579999986 55555444333221 1125544 566665444444443 68999988776531100
Q ss_pred hhcCCCCCCcccccccccCCCCCCcccccccCCCCCCcchhhccCcccccceeEEEEccccccc--chhhHHHHHHHhcc
Q 001825 856 KIEGEDLPPMYCSSSKKRKCPPSSDRKGSKQKKGPDGLLLDIVAGPLAKVGWFRVVLDEAQSIK--NHRTQVARACWGLR 933 (1009)
Q Consensus 856 ~~e~~~~~~~~~ssskkRK~~~~s~kk~s~~kk~~d~~~~d~~~s~L~~i~W~RVILDEAH~IK--N~~Sq~skAl~~L~ 933 (1009)
.-.|.--...+||+|||.+|- ...-+..+.+.+|.
T Consensus 157 -------------------------------------------em~l~l~sveyVVfdEadrlfemgfqeql~e~l~rl~ 193 (529)
T KOG0337|consen 157 -------------------------------------------EMTLTLSSVEYVVFDEADRLFEMGFQEQLHEILSRLP 193 (529)
T ss_pred -------------------------------------------heeccccceeeeeehhhhHHHhhhhHHHHHHHHHhCC
Confidence 000222234679999999984 34567777788885
Q ss_pred c-CeEEEEeccC
Q 001825 934 A-KRRWCLSGTP 944 (1009)
Q Consensus 934 A-k~RW~LTGTP 944 (1009)
. .-.+++|||-
T Consensus 194 ~~~QTllfSatl 205 (529)
T KOG0337|consen 194 ESRQTLLFSATL 205 (529)
T ss_pred CcceEEEEeccC
Confidence 3 4678999994
No 197
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=40.84 E-value=3e+02 Score=34.93 Aligned_cols=41 Identities=20% Similarity=0.165 Sum_probs=26.6
Q ss_pred chhHHHHHHHHHhccccCCCCcccEEEcCCCchHHHHHHHHHHH
Q 001825 668 LRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILK 711 (1009)
Q Consensus 668 rPHQkegV~WMlqrE~s~~~~rGGILADEMGLGKTVqaIALIl~ 711 (1009)
.+|-+..+..++...+-. ..-|+.-..|.|||..+..+...
T Consensus 21 Qe~vv~~L~~~l~~~rl~---hAyLf~Gp~GvGKTTlAr~lAk~ 61 (647)
T PRK07994 21 QEHVLTALANALDLGRLH---HAYLFSGTRGVGKTTIARLLAKG 61 (647)
T ss_pred cHHHHHHHHHHHHcCCCC---eEEEEECCCCCCHHHHHHHHHHh
Confidence 445555666666543311 22378889999999988777643
No 198
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=40.72 E-value=4.2e+02 Score=34.72 Aligned_cols=41 Identities=22% Similarity=0.189 Sum_probs=28.0
Q ss_pred chhHHHHHHHHHhccccCCCCcccEEEcCCCchHHHHHHHHHHH
Q 001825 668 LRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILK 711 (1009)
Q Consensus 668 rPHQkegV~WMlqrE~s~~~~rGGILADEMGLGKTVqaIALIl~ 711 (1009)
.+|-+..|..++...+-. ..-||.-..|+|||..+..|...
T Consensus 20 qe~v~~~L~~~i~~~ri~---Ha~Lf~Gp~G~GKTt~A~~lAr~ 60 (824)
T PRK07764 20 QEHVTEPLSTALDSGRIN---HAYLFSGPRGCGKTSSARILARS 60 (824)
T ss_pred cHHHHHHHHHHHHhCCCC---ceEEEECCCCCCHHHHHHHHHHH
Confidence 455566677777654322 22378889999999988877644
No 199
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=40.56 E-value=5.9e+02 Score=32.72 Aligned_cols=57 Identities=16% Similarity=0.137 Sum_probs=33.5
Q ss_pred ceeEEEEcccccccchhhHHHHHHHhcc---cCeEEEEeccCCCCCHHHHHHHHHhhCCCCC
Q 001825 906 GWFRVVLDEAQSIKNHRTQVARACWGLR---AKRRWCLSGTPIQNAIDDLYSYFRFLRYDPF 964 (1009)
Q Consensus 906 ~W~RVILDEAH~IKN~~Sq~skAl~~L~---Ak~RW~LTGTPIQNsL~DLySLLrFLrp~pf 964 (1009)
+|..+||||+|++-.. .....++.|. ..-+++|..|=.+.-+.-|.+=+..+...++
T Consensus 124 r~KViIIDEah~Ls~~--AaNALLKTLEEPP~~v~FILaTtep~kLlpTIrSRCq~f~f~~l 183 (700)
T PRK12323 124 RFKVYMIDEVHMLTNH--AFNAMLKTLEEPPEHVKFILATTDPQKIPVTVLSRCLQFNLKQM 183 (700)
T ss_pred CceEEEEEChHhcCHH--HHHHHHHhhccCCCCceEEEEeCChHhhhhHHHHHHHhcccCCC
Confidence 5789999999999432 2233455552 3457777766444444445554444444444
No 200
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=40.53 E-value=2e+02 Score=33.22 Aligned_cols=44 Identities=14% Similarity=0.124 Sum_probs=33.7
Q ss_pred CCchhHHHHHHHHHhccccCCCCcccEEEcCCCchHHHHHHHHHHHc
Q 001825 666 PLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKE 712 (1009)
Q Consensus 666 ~LrPHQkegV~WMlqrE~s~~~~rGGILADEMGLGKTVqaIALIl~~ 712 (1009)
.++|+|.....-|+++.+-+ ..=++.-..|+|||..+.+++...
T Consensus 3 ~~yPWl~~~~~~~~~~~r~~---ha~Lf~G~~G~GK~~~A~~~A~~l 46 (328)
T PRK05707 3 EIYPWQQSLWQQLAGRGRHP---HAYLLHGPAGIGKRALAERLAAAL 46 (328)
T ss_pred cCCCCcHHHHHHHHHCCCcc---eeeeeECCCCCCHHHHHHHHHHHH
Confidence 46999999999898873322 334578899999999998887553
No 201
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=40.25 E-value=41 Score=37.91 Aligned_cols=16 Identities=19% Similarity=0.254 Sum_probs=13.1
Q ss_pred ccCCCEEEEehhhhhc
Q 001825 823 LAKFDVVITTYSIVSM 838 (1009)
Q Consensus 823 LakyDVVITTYstLs~ 838 (1009)
+..+||||++|..|..
T Consensus 209 ~~~Adivi~ny~yll~ 224 (289)
T smart00488 209 IEFANVVVLPYQYLLD 224 (289)
T ss_pred hhcCCEEEECHHHHhc
Confidence 4678999999998853
No 202
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=40.25 E-value=41 Score=37.91 Aligned_cols=16 Identities=19% Similarity=0.254 Sum_probs=13.1
Q ss_pred ccCCCEEEEehhhhhc
Q 001825 823 LAKFDVVITTYSIVSM 838 (1009)
Q Consensus 823 LakyDVVITTYstLs~ 838 (1009)
+..+||||++|..|..
T Consensus 209 ~~~Adivi~ny~yll~ 224 (289)
T smart00489 209 IEFANVVVLPYQYLLD 224 (289)
T ss_pred hhcCCEEEECHHHHhc
Confidence 4678999999998853
No 203
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=39.78 E-value=20 Score=44.96 Aligned_cols=37 Identities=24% Similarity=0.300 Sum_probs=22.5
Q ss_pred HHHHHHHHHhccccCCCCcccEEEcCCCchHHHHHHHHHH
Q 001825 671 QRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALIL 710 (1009)
Q Consensus 671 QkegV~WMlqrE~s~~~~rGGILADEMGLGKTVqaIALIl 710 (1009)
|++-+.++.+..... +..|+--..|.|||+..+.-++
T Consensus 2 Q~~~~~~i~~al~~~---~~lliEA~TGtGKTlAYLlpal 38 (636)
T TIGR03117 2 QALFYLNCLTSLRQK---RIGMLEASTGVGKTLAMIMAAL 38 (636)
T ss_pred HHHHHHHHHHHHhcC---CeEEEEcCCCCcHHHHHHHHHH
Confidence 666666666554322 2344445899999987765543
No 204
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=39.10 E-value=4.4e+02 Score=33.45 Aligned_cols=41 Identities=17% Similarity=0.205 Sum_probs=26.3
Q ss_pred chhHHHHHHHHHhccccCCCCcccEEEcCCCchHHHHHHHHHHH
Q 001825 668 LRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILK 711 (1009)
Q Consensus 668 rPHQkegV~WMlqrE~s~~~~rGGILADEMGLGKTVqaIALIl~ 711 (1009)
.+|=+.-+..++...+- ...-||.-..|.|||..+..++..
T Consensus 21 Qe~v~~~L~~ai~~~ri---~ha~Lf~GPpG~GKTtiArilAk~ 61 (624)
T PRK14959 21 QETVKAILSRAAQENRV---APAYLFSGTRGVGKTTIARIFAKA 61 (624)
T ss_pred CHHHHHHHHHHHHcCCC---CceEEEECCCCCCHHHHHHHHHHh
Confidence 34445555565544321 133457899999999998877744
No 205
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=38.76 E-value=1.9e+02 Score=37.19 Aligned_cols=39 Identities=18% Similarity=0.114 Sum_probs=29.7
Q ss_pred CCCchhHHHHHHHHHhccccCCCCcccEEEcCCCchHHHHHHHHH
Q 001825 665 VPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 709 (1009)
Q Consensus 665 v~LrPHQkegV~WMlqrE~s~~~~rGGILADEMGLGKTVqaIALI 709 (1009)
..|-+-|+.|+.-++... +=.+|---.|.|||.++-+++
T Consensus 351 ~~Ls~~Q~~Av~~i~~s~------~~~il~G~aGTGKTtll~~i~ 389 (744)
T TIGR02768 351 YRLSEEQYEAVRHVTGSG------DIAVVVGRAGTGKSTMLKAAR 389 (744)
T ss_pred CCCCHHHHHHHHHHhcCC------CEEEEEecCCCCHHHHHHHHH
Confidence 568899999999887421 225788889999998776655
No 206
>PLN03025 replication factor C subunit; Provisional
Probab=38.31 E-value=66 Score=36.45 Aligned_cols=61 Identities=21% Similarity=0.247 Sum_probs=39.5
Q ss_pred ceeEEEEcccccccchhhHH-HHHHHhcccCeEEEEeccCCCCCHHHHHHHHHhhCCCCCCC
Q 001825 906 GWFRVVLDEAQSIKNHRTQV-ARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAV 966 (1009)
Q Consensus 906 ~W~RVILDEAH~IKN~~Sq~-skAl~~L~Ak~RW~LTGTPIQNsL~DLySLLrFLrp~pf~~ 966 (1009)
.|..||+||+|.+-...... .+.+.......+++++.++...-+..|-+-+..++..++..
T Consensus 99 ~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SRc~~i~f~~l~~ 160 (319)
T PLN03025 99 RHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLSD 160 (319)
T ss_pred CeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHHhhhcccCCCCCH
Confidence 47899999999985322111 11122223456789998887776777877776677666643
No 207
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=38.29 E-value=2.8e+02 Score=34.22 Aligned_cols=41 Identities=20% Similarity=0.218 Sum_probs=26.0
Q ss_pred chhHHHHHHHHHhccccCCCCcccEEEcCCCchHHHHHHHHHHH
Q 001825 668 LRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILK 711 (1009)
Q Consensus 668 rPHQkegV~WMlqrE~s~~~~rGGILADEMGLGKTVqaIALIl~ 711 (1009)
.+|-+..+..++...+-. ..-||.-..|.|||..+.++...
T Consensus 21 q~~v~~~L~~~i~~~~~~---ha~Lf~Gp~G~GKTt~A~~lAk~ 61 (527)
T PRK14969 21 QEHVVRALTNALEQQRLH---HAYLFTGTRGVGKTTLARILAKS 61 (527)
T ss_pred cHHHHHHHHHHHHcCCCC---EEEEEECCCCCCHHHHHHHHHHH
Confidence 445555665555543221 23378899999999887776643
No 208
>PF13245 AAA_19: Part of AAA domain
Probab=37.95 E-value=54 Score=29.74 Aligned_cols=21 Identities=29% Similarity=0.308 Sum_probs=16.2
Q ss_pred cEEEcCCCchHHHHHHHHHHH
Q 001825 691 GILADDQGLGKTISTIALILK 711 (1009)
Q Consensus 691 GILADEMGLGKTVqaIALIl~ 711 (1009)
.++---.|.|||.+++.++..
T Consensus 13 ~vv~g~pGtGKT~~~~~~i~~ 33 (76)
T PF13245_consen 13 FVVQGPPGTGKTTTLAARIAE 33 (76)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 344667899999888888754
No 209
>CHL00181 cbbX CbbX; Provisional
Probab=37.84 E-value=85 Score=35.44 Aligned_cols=20 Identities=20% Similarity=0.247 Sum_probs=16.7
Q ss_pred cEEEcCCCchHHHHHHHHHH
Q 001825 691 GILADDQGLGKTISTIALIL 710 (1009)
Q Consensus 691 GILADEMGLGKTVqaIALIl 710 (1009)
-+|--..|.|||..|-++..
T Consensus 62 ill~G~pGtGKT~lAr~la~ 81 (287)
T CHL00181 62 MSFTGSPGTGKTTVALKMAD 81 (287)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 47888999999998887763
No 210
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=37.26 E-value=55 Score=43.06 Aligned_cols=59 Identities=17% Similarity=0.324 Sum_probs=40.9
Q ss_pred CCCcEEEEeCh-hhHHHHHHHHHHHhcCCCCcEEEEEcCCCCCCCcccccCCCEEEEehhhh
Q 001825 776 PAAGTLVVCPT-SVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCELAKFDVVITTYSIV 836 (1009)
Q Consensus 776 pa~~TLIVcP~-SLL~QW~~EI~K~~~~~~~LkVlVy~Gs~R~k~~~~LakyDVVITTYstL 836 (1009)
|.+.+.+|.|. .|+.-=.+.+.+....+ .++++-..|.... +.....+.+++|||.+..
T Consensus 972 p~~kvvyIap~kalvker~~Dw~~r~~~~-g~k~ie~tgd~~p-d~~~v~~~~~~ittpek~ 1031 (1230)
T KOG0952|consen 972 PGSKVVYIAPDKALVKERSDDWSKRDELP-GIKVIELTGDVTP-DVKAVREADIVITTPEKW 1031 (1230)
T ss_pred CCccEEEEcCCchhhcccccchhhhcccC-CceeEeccCccCC-ChhheecCceEEcccccc
Confidence 34568999996 46655555555554422 5788888776543 477788999999998765
No 211
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=36.46 E-value=42 Score=37.73 Aligned_cols=59 Identities=24% Similarity=0.217 Sum_probs=42.7
Q ss_pred cEEEEeChh-hHHHHHHHHHHHhcCCCCcEEEEEcCCCCCCC-cccccC-CCEEEEehhhhh
Q 001825 779 GTLVVCPTS-VLRQWAEELRNKVTSKGSLSVLVYHGSSRTKD-PCELAK-FDVVITTYSIVS 837 (1009)
Q Consensus 779 ~TLIVcP~S-LL~QW~~EI~K~~~~~~~LkVlVy~Gs~R~k~-~~~Lak-yDVVITTYstLs 837 (1009)
.+||+|-.- |..|-.+|..+|-.-.+..++.++.|.-..+. ...+.+ ..||+.|-..+.
T Consensus 112 svlvmchtrelafqi~~ey~rfskymP~vkvaVFfGG~~Ikkdee~lk~~PhivVgTPGril 173 (387)
T KOG0329|consen 112 SVLVMCHTRELAFQISKEYERFSKYMPSVKVSVFFGGLFIKKDEELLKNCPHIVVGTPGRIL 173 (387)
T ss_pred EEEEEeccHHHHHHHHHHHHHHHhhCCCceEEEEEcceeccccHHHHhCCCeEEEcCcHHHH
Confidence 479999875 78999999988766566899999988765443 333443 457777776653
No 212
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=35.02 E-value=21 Score=45.52 Aligned_cols=60 Identities=17% Similarity=0.242 Sum_probs=35.6
Q ss_pred CCCcchhhccCcccccceeEEEEcccccccchh---------------hHHHHHHHhcccCeEEEEeccCCCCCHH
Q 001825 890 PDGLLLDIVAGPLAKVGWFRVVLDEAQSIKNHR---------------TQVARACWGLRAKRRWCLSGTPIQNAID 950 (1009)
Q Consensus 890 ~d~~~~d~~~s~L~~i~W~RVILDEAH~IKN~~---------------Sq~skAl~~L~Ak~RW~LTGTPIQNsL~ 950 (1009)
-++.++.....-+.-..+..|||||||. ++-+ .+.++.-+.+..-+.++||||-=-..+.
T Consensus 356 TDGVLLrEi~~DflL~kYSvIIlDEAHE-RSvnTDILiGmLSRiV~LR~k~~ke~~~~kpLKLIIMSATLRVsDFt 430 (1172)
T KOG0926|consen 356 TDGVLLREIENDFLLTKYSVIILDEAHE-RSVNTDILIGMLSRIVPLRQKYYKEQCQIKPLKLIIMSATLRVSDFT 430 (1172)
T ss_pred cchHHHHHHHHhHhhhhceeEEechhhh-ccchHHHHHHHHHHHHHHHHHHhhhhcccCceeEEEEeeeEEecccc
Confidence 3556665555566667889999999994 1211 1222222233345678999996544433
No 213
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=34.55 E-value=2.4e+02 Score=34.04 Aligned_cols=21 Identities=24% Similarity=0.202 Sum_probs=15.7
Q ss_pred cccEEEcCCCchHHHHHHHHH
Q 001825 689 SGGILADDQGLGKTISTIALI 709 (1009)
Q Consensus 689 rGGILADEMGLGKTVqaIALI 709 (1009)
.+-+|--+.|+|||-.+-|+.
T Consensus 142 npl~i~G~~G~GKTHLl~Ai~ 162 (450)
T PRK14087 142 NPLFIYGESGMGKTHLLKAAK 162 (450)
T ss_pred CceEEECCCCCcHHHHHHHHH
Confidence 345678899999997765554
No 214
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=34.44 E-value=5.5e+02 Score=32.47 Aligned_cols=41 Identities=15% Similarity=0.124 Sum_probs=26.5
Q ss_pred chhHHHHHHHHHhccccCCCCcccEEEcCCCchHHHHHHHHHHH
Q 001825 668 LRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILK 711 (1009)
Q Consensus 668 rPHQkegV~WMlqrE~s~~~~rGGILADEMGLGKTVqaIALIl~ 711 (1009)
.++-+..+..+++..+.+ ..-|+.-..|.|||..|.+++..
T Consensus 21 Qe~iv~~L~~aI~~~rl~---hA~Lf~GP~GvGKTTlA~~lAk~ 61 (605)
T PRK05896 21 QELIKKILVNAILNNKLT---HAYIFSGPRGIGKTSIAKIFAKA 61 (605)
T ss_pred cHHHHHHHHHHHHcCCCC---ceEEEECCCCCCHHHHHHHHHHH
Confidence 445555555555433221 34568889999999999888754
No 215
>smart00298 CHROMO Chromatin organization modifier domain.
Probab=34.03 E-value=18 Score=29.71 Aligned_cols=24 Identities=13% Similarity=-0.141 Sum_probs=20.1
Q ss_pred CCccchhcccCCCCCccCcchhhc
Q 001825 578 SNQSLVLGKTLSMNRSACSNHSVA 601 (1009)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~~~~~~~ 601 (1009)
.....||++|.|+++..|+|....
T Consensus 15 ~~~~~ylVkW~g~~~~~~tW~~~~ 38 (55)
T smart00298 15 KGELEYLVKWKGYSYSEDTWEPEE 38 (55)
T ss_pred CCcEEEEEEECCCCCccCceeeHH
Confidence 445789999999999999996654
No 216
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=33.84 E-value=23 Score=44.69 Aligned_cols=16 Identities=19% Similarity=0.293 Sum_probs=13.3
Q ss_pred cccCCCEEEEehhhhh
Q 001825 822 ELAKFDVVITTYSIVS 837 (1009)
Q Consensus 822 ~LakyDVVITTYstLs 837 (1009)
.+..+||||.+|..|-
T Consensus 192 ~~~~advIi~pYnyl~ 207 (705)
T TIGR00604 192 MLPFANIVLLPYQYLL 207 (705)
T ss_pred hhhcCCEEEechHHhc
Confidence 3568999999999884
No 217
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=33.12 E-value=5.4e+02 Score=30.30 Aligned_cols=42 Identities=14% Similarity=0.089 Sum_probs=26.0
Q ss_pred HHHHHHHHHhccccCCCCcccEEEcCCCchHHHHHHHHHHHc
Q 001825 671 QRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKE 712 (1009)
Q Consensus 671 QkegV~WMlqrE~s~~~~rGGILADEMGLGKTVqaIALIl~~ 712 (1009)
|..++..+.+....+..+..=++.-..|+|||..+.+++...
T Consensus 24 q~~~~~~L~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~~A~~L 65 (365)
T PRK07471 24 HAAAEAALLDAYRSGRLHHAWLIGGPQGIGKATLAYRMARFL 65 (365)
T ss_pred hHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 444444444333332222345678899999999999888554
No 218
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=31.10 E-value=36 Score=42.52 Aligned_cols=47 Identities=21% Similarity=0.314 Sum_probs=30.7
Q ss_pred cceeEEEEcccccccchhhHHHHHHHhc-------ccC-eEEEEeccCCCCCHHHHHHH
Q 001825 905 VGWFRVVLDEAQSIKNHRTQVARACWGL-------RAK-RRWCLSGTPIQNAIDDLYSY 955 (1009)
Q Consensus 905 i~W~RVILDEAH~IKN~~Sq~skAl~~L-------~Ak-~RW~LTGTPIQNsL~DLySL 955 (1009)
-++..|||||||. +|..+..+..| +.. +.+++|||-=...+.+.|.-
T Consensus 162 skYsvIIlDEAHE----Rsl~TDiLlGlLKki~~~R~~LklIimSATlda~kfS~yF~~ 216 (674)
T KOG0922|consen 162 SKYSVIILDEAHE----RSLHTDILLGLLKKILKKRPDLKLIIMSATLDAEKFSEYFNN 216 (674)
T ss_pred ccccEEEEechhh----hhhHHHHHHHHHHHHHhcCCCceEEEEeeeecHHHHHHHhcC
Confidence 3578999999994 45555544443 333 66788999665555555543
No 219
>PRK11054 helD DNA helicase IV; Provisional
Probab=30.16 E-value=1e+02 Score=39.21 Aligned_cols=39 Identities=28% Similarity=0.347 Sum_probs=28.5
Q ss_pred ceeEEEEcccccccchhhHHHHHHHhcc---cCeEEEEeccCCCC
Q 001825 906 GWFRVVLDEAQSIKNHRTQVARACWGLR---AKRRWCLSGTPIQN 947 (1009)
Q Consensus 906 ~W~RVILDEAH~IKN~~Sq~skAl~~L~---Ak~RW~LTGTPIQN 947 (1009)
.|+.|+|||+|-+- ....+.+..|. ...++++-|=|-|.
T Consensus 430 ~~~~IlVDE~QD~s---~~q~~ll~~l~~~~~~~~l~~VGD~~Qs 471 (684)
T PRK11054 430 PWKHILVDEFQDIS---PQRAALLAALRKQNSQTTLFAVGDDWQA 471 (684)
T ss_pred cccEEEEEccccCC---HHHHHHHHHHhccCCCCeEEEEECCCcc
Confidence 59999999999874 34455555553 34678888999885
No 220
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=29.96 E-value=3.1e+02 Score=31.79 Aligned_cols=47 Identities=13% Similarity=-0.004 Sum_probs=33.6
Q ss_pred CCchhHHHHHHHHHhccccCCCCcccEEEcCCCchHHHHHHHHHHHc
Q 001825 666 PLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKE 712 (1009)
Q Consensus 666 ~LrPHQkegV~WMlqrE~s~~~~rGGILADEMGLGKTVqaIALIl~~ 712 (1009)
.+||+|...-..+.+....+..+..=+++-..|+||+..+.++....
T Consensus 2 ~~yPWl~~~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~~A~~L 48 (334)
T PRK07993 2 KWYPWLRPDYEQLVGSYQAGRGHHALLIQALPGMGDDALIYALSRWL 48 (334)
T ss_pred CCCCCChHHHHHHHHHHHcCCcceEEeeECCCCCCHHHHHHHHHHHH
Confidence 46888888777776665443222344578899999999999988664
No 221
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=29.09 E-value=44 Score=40.60 Aligned_cols=51 Identities=24% Similarity=0.278 Sum_probs=34.1
Q ss_pred cceeEEEEcccccccchhhHHHHHHHhc-------ccC-eEEEEeccCCCCCHHHHHHHHHhh
Q 001825 905 VGWFRVVLDEAQSIKNHRTQVARACWGL-------RAK-RRWCLSGTPIQNAIDDLYSYFRFL 959 (1009)
Q Consensus 905 i~W~RVILDEAH~IKN~~Sq~skAl~~L-------~Ak-~RW~LTGTPIQNsL~DLySLLrFL 959 (1009)
-.|..|||||||. +|..+..+..| +.. +.+++|+|-...++...|.=.-.|
T Consensus 158 ~~y~viiLDeahE----RtlATDiLmGllk~v~~~rpdLk~vvmSatl~a~Kfq~yf~n~Pll 216 (699)
T KOG0925|consen 158 GRYGVIILDEAHE----RTLATDILMGLLKEVVRNRPDLKLVVMSATLDAEKFQRYFGNAPLL 216 (699)
T ss_pred ccccEEEechhhh----hhHHHHHHHHHHHHHHhhCCCceEEEeecccchHHHHHHhCCCCee
Confidence 4699999999994 56666555554 333 557889997777766655433333
No 222
>COG1702 PhoH Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms]
Probab=28.99 E-value=30 Score=40.27 Aligned_cols=40 Identities=23% Similarity=0.190 Sum_probs=28.5
Q ss_pred eEEEEcccccccchhhHHHHHHHhcccCeEEEEeccCCCCCH
Q 001825 908 FRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAI 949 (1009)
Q Consensus 908 ~RVILDEAH~IKN~~Sq~skAl~~L~Ak~RW~LTGTPIQNsL 949 (1009)
..|||||||+ ..-.+.-..+-+|-...+..+||++.|=.|
T Consensus 245 AfVIlDEaQN--tT~~QmKMfLTRiGf~skmvItGD~tQiDL 284 (348)
T COG1702 245 AFVILDEAQN--TTVGQMKMFLTRIGFESKMVITGDITQIDL 284 (348)
T ss_pred eEEEEecccc--cchhhhceeeeeecCCceEEEEcCcccccC
Confidence 4699999996 222233334566788899999999998543
No 223
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=28.07 E-value=1.5e+02 Score=36.96 Aligned_cols=45 Identities=18% Similarity=0.182 Sum_probs=33.8
Q ss_pred cCCCchhHHHHHHHHHhccccCCCCcccEEEcCCCchHHHHHHHHHHH
Q 001825 664 AVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILK 711 (1009)
Q Consensus 664 kv~LrPHQkegV~WMlqrE~s~~~~rGGILADEMGLGKTVqaIALIl~ 711 (1009)
....|+.|+..+.-+....... ..+|+=-..|.|||+..|+.++.
T Consensus 13 ~~~~r~~Q~~~~~~v~~a~~~~---~~~~iEapTGtGKTl~yL~~al~ 57 (654)
T COG1199 13 GFEPRPEQREMAEAVAEALKGG---EGLLIEAPTGTGKTLAYLLPALA 57 (654)
T ss_pred CCCCCHHHHHHHHHHHHHHcCC---CcEEEECCCCccHHHHHHHHHHH
Confidence 3568999999988877544332 34677778999999999887765
No 224
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=27.99 E-value=3.9e+02 Score=36.58 Aligned_cols=54 Identities=20% Similarity=0.298 Sum_probs=35.9
Q ss_pred CcEEEEeChhhH-----HHHHHHHHHHhcCCCCcEEEEEcCCCCCCCcccccCCCEEEEehhhh
Q 001825 778 AGTLVVCPTSVL-----RQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCELAKFDVVITTYSIV 836 (1009)
Q Consensus 778 ~~TLIVcP~SLL-----~QW~~EI~K~~~~~~~LkVlVy~Gs~R~k~~~~LakyDVVITTYstL 836 (1009)
+.++-|.|...+ .-|..-|.+.. .+. ++-.|..+..+...+.+.+|+|.|.+.+
T Consensus 1187 ~~~vyi~p~~~i~~~~~~~w~~~f~~~~----G~~-~~~l~ge~s~~lkl~~~~~vii~tpe~~ 1245 (1674)
T KOG0951|consen 1187 GRAVYIAPLEEIADEQYRDWEKKFSKLL----GLR-IVKLTGETSLDLKLLQKGQVIISTPEQW 1245 (1674)
T ss_pred eEEEEecchHHHHHHHHHHHHHhhcccc----Cce-EEecCCccccchHHhhhcceEEechhHH
Confidence 457888898743 45555554431 244 4444555667778889999999998776
No 225
>cd00133 PTS_IIB PTS_IIB: subunit IIB of enzyme II (EII) is the central energy-coupling domain of the phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In the multienzyme PTS complex, EII is a carbohydrate-specific permease consisting of two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include chitobiose/lichenan, ascorbate, lactose, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system. The PTS is found only in bacteria, where it catalyzes the transport and phosphorylation of numerous monosaccharides, disaccharides, polyols, amino sugars, and other sugar derivatives. The four proteins (domains) forming the PTS phosphorylation cascade (EI, HPr, EIIA, and EIIB), can phosphorylate or interact with numerous non-PTS proteins thereby r
Probab=26.68 E-value=1.5e+02 Score=25.57 Aligned_cols=52 Identities=29% Similarity=0.378 Sum_probs=30.6
Q ss_pred EEEEeChhhHHH--HHHHHHHHhcCCCCcEEEEEcCCCCCCCcccccCCCEEEEehh
Q 001825 780 TLVVCPTSVLRQ--WAEELRNKVTSKGSLSVLVYHGSSRTKDPCELAKFDVVITTYS 834 (1009)
Q Consensus 780 TLIVcP~SLL~Q--W~~EI~K~~~~~~~LkVlVy~Gs~R~k~~~~LakyDVVITTYs 834 (1009)
+|+||+...-.. -+..+++.++.......+-+.+-... ....++|+||+|-.
T Consensus 2 il~vc~~G~~~s~~l~~~l~~~~~~~~~~~~~~~~~~~~~---~~~~~~dliitt~~ 55 (84)
T cd00133 2 ILVVCGSGIGSSSMLAEKLEKAAKELGIEVKVEAQGLSEV---IDLADADLIISTVP 55 (84)
T ss_pred EEEECCCcHhHHHHHHHHHHHHHHHCCCeEEEEEcccchh---hhcCCccEEEECCc
Confidence 689999875433 35777777763322222222221111 45679999999975
No 226
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=25.64 E-value=5.4e+02 Score=29.90 Aligned_cols=47 Identities=19% Similarity=0.099 Sum_probs=31.0
Q ss_pred CCchhHHHHHHHHHhccccCCCCcccEEEcCCCchHHHHHHHHHHHc
Q 001825 666 PLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKE 712 (1009)
Q Consensus 666 ~LrPHQkegV~WMlqrE~s~~~~rGGILADEMGLGKTVqaIALIl~~ 712 (1009)
.++|+|...-.-+.+....+..+.+=++.-..|+||+..+.+++...
T Consensus 2 ~~yPW~~~~~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~~A~~l 48 (325)
T PRK06871 2 ALYPWLQPTYQQITQAFQQGLGHHALLFKADSGLGTEQLIRALAQWL 48 (325)
T ss_pred CCCcchHHHHHHHHHHHHcCCcceeEEeECCCCCCHHHHHHHHHHHH
Confidence 35787766666555554433222344577899999999999888554
No 227
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=25.17 E-value=8.4e+02 Score=30.41 Aligned_cols=41 Identities=17% Similarity=0.191 Sum_probs=25.0
Q ss_pred chhHHHHHHHHHhccccCCCCcccEEEcCCCchHHHHHHHHHHH
Q 001825 668 LRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILK 711 (1009)
Q Consensus 668 rPHQkegV~WMlqrE~s~~~~rGGILADEMGLGKTVqaIALIl~ 711 (1009)
.+|-...+...+...+-+ ..-|+.-..|+|||..+-.+...
T Consensus 21 q~~v~~~L~~~i~~~~~~---hayLf~Gp~GtGKTt~Ak~lAka 61 (559)
T PRK05563 21 QEHITKTLKNAIKQGKIS---HAYLFSGPRGTGKTSAAKIFAKA 61 (559)
T ss_pred cHHHHHHHHHHHHcCCCC---eEEEEECCCCCCHHHHHHHHHHH
Confidence 445555555444432211 22356899999999988777643
No 228
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=24.47 E-value=80 Score=37.98 Aligned_cols=56 Identities=13% Similarity=0.064 Sum_probs=37.5
Q ss_pred ceeEEEEcccccccch------hhHHHHHHHhccc-CeEEEEeccCCCCCHHHHHHHHHhhCC
Q 001825 906 GWFRVVLDEAQSIKNH------RTQVARACWGLRA-KRRWCLSGTPIQNAIDDLYSYFRFLRY 961 (1009)
Q Consensus 906 ~W~RVILDEAH~IKN~------~Sq~skAl~~L~A-k~RW~LTGTPIQNsL~DLySLLrFLrp 961 (1009)
...+++|||||.+.-. .-...-+++..-. --.++||+|--..--+|+|..|++-.|
T Consensus 141 ~L~Y~vVDEAHCVSQWGHDFRPDYL~LG~LRS~~~~vpwvALTATA~~~VqEDi~~qL~L~~P 203 (641)
T KOG0352|consen 141 VLRYIVVDEAHCVSQWGHDFRPDYLTLGSLRSVCPGVPWVALTATANAKVQEDIAFQLKLRNP 203 (641)
T ss_pred eeeeEEechhhhHhhhccccCcchhhhhhHHhhCCCCceEEeecccChhHHHHHHHHHhhcCc
Confidence 3567999999987432 2222223333222 234679999998889999999997766
No 229
>cd05566 PTS_IIB_galactitol PTS_IIB_galactitol: subunit IIB of enzyme II (EII) of the galactitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is a galactitol-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain that are expressed on three distinct polypeptide chains, in contrast to other PTS sugar transporters. The three genes encoding these subunits (gatA, gatB, and gatC) comprise the gatCBA operon. Galactitol PTS permease takes up exogenous galactitol, releasing the phosphate ester into the cytoplasm in preparation for oxidation and further metabolism via a modified glycolytic pathway called the tagatose-6-phosphate glycolytic pathway. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include galactitol, chitobiose/lichenan, ascorbate, lactose, mannitol, fructose, and
Probab=24.00 E-value=1.2e+02 Score=27.53 Aligned_cols=55 Identities=20% Similarity=0.266 Sum_probs=31.5
Q ss_pred cEEEEeChhh-H-HHHHHHHHHHhcCCCCcEEEEEcCCCCCCCcccccCCCEEEEehhh
Q 001825 779 GTLVVCPTSV-L-RQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCELAKFDVVITTYSI 835 (1009)
Q Consensus 779 ~TLIVcP~SL-L-~QW~~EI~K~~~~~~~LkVlVy~Gs~R~k~~~~LakyDVVITTYst 835 (1009)
.+|||||..+ . ..-+..++++++. ..+.+.+-+........ ...++|+||+|-..
T Consensus 2 ~ilivC~~G~~tS~~l~~~i~~~~~~-~~i~~~v~~~~~~~~~~-~~~~~Dliist~~~ 58 (89)
T cd05566 2 KILVACGTGVATSTVVASKVKELLKE-NGIDVKVEQCKIAEVPS-LLDDADLIVSTTKV 58 (89)
T ss_pred EEEEECCCCccHHHHHHHHHHHHHHH-CCCceEEEEecHHHhhc-ccCCCcEEEEcCCc
Confidence 4799999865 2 3457777777752 23333332222111111 34689999998754
No 230
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=23.80 E-value=60 Score=38.44 Aligned_cols=38 Identities=24% Similarity=0.293 Sum_probs=27.2
Q ss_pred eEEEEcccccccchhhHHHHHHHhcccCeEEEEeccCCCC
Q 001825 908 FRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQN 947 (1009)
Q Consensus 908 ~RVILDEAH~IKN~~Sq~skAl~~L~Ak~RW~LTGTPIQN 947 (1009)
..||+||||++-.+.- --.+.+.-...|++|||-|-|-
T Consensus 353 ~FiIIDEaQNLTphei--kTiltR~G~GsKIVl~gd~aQi 390 (436)
T COG1875 353 SFIIIDEAQNLTPHEL--KTILTRAGEGSKIVLTGDPAQI 390 (436)
T ss_pred ceEEEehhhccCHHHH--HHHHHhccCCCEEEEcCCHHHc
Confidence 4699999999854322 2234455677899999999863
No 231
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=22.40 E-value=5.1e+02 Score=30.95 Aligned_cols=22 Identities=27% Similarity=0.123 Sum_probs=17.1
Q ss_pred cccEEEcCCCchHHHHHHHHHH
Q 001825 689 SGGILADDQGLGKTISTIALIL 710 (1009)
Q Consensus 689 rGGILADEMGLGKTVqaIALIl 710 (1009)
+.-+|--..|+|||-.+-|+..
T Consensus 149 ~~l~l~G~~G~GKThL~~ai~~ 170 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLHAIGN 170 (450)
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 3457888999999988777663
No 232
>cd05563 PTS_IIB_ascorbate PTS_IIB_ascorbate: subunit IIB of enzyme II (EII) of the L-ascorbate-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is an L-ascorbate-specific permease with two cytoplasmic subunits (IIA and IIB) and a transmembrane channel IIC subunit. Subunits IIA, IIB, and IIC are encoded by the sgaA, sgaB, and sgaT genes of the E. coli sgaTBA operon. In some bacteria, the IIB (SgaB) domain is fused C-terminal to the IIA (SgaT) domain. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include ascorbate, chitobiose/lichenan, lactose, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=22.02 E-value=2.3e+02 Score=25.56 Aligned_cols=51 Identities=16% Similarity=0.275 Sum_probs=28.4
Q ss_pred EEEEeChhh-HHH-HHHHHHHHhcCCCCcEEEEEcCCCCCCCcccccCCCEEEEehh
Q 001825 780 TLVVCPTSV-LRQ-WAEELRNKVTSKGSLSVLVYHGSSRTKDPCELAKFDVVITTYS 834 (1009)
Q Consensus 780 TLIVcP~SL-L~Q-W~~EI~K~~~~~~~LkVlVy~Gs~R~k~~~~LakyDVVITTYs 834 (1009)
+|||||... ..+ =+..++++++..+ +...+-...-. .....++|+||||-.
T Consensus 2 ilvvC~~G~~tS~ll~~kl~~~f~~~~-i~~~~~~~~~~---~~~~~~~DlIisT~~ 54 (86)
T cd05563 2 ILAVCGSGLGSSLMLKMNVEKVLKELG-IEAEVEHTDLG---SAKASSADIIVTSKD 54 (86)
T ss_pred EEEECCCCccHHHHHHHHHHHHHHHCC-CcEEEEEeccc---ccCCCCCCEEEEchh
Confidence 699999864 333 3457777775322 22222111111 112568999999975
No 233
>PRK04296 thymidine kinase; Provisional
Probab=21.50 E-value=86 Score=32.96 Aligned_cols=35 Identities=23% Similarity=0.039 Sum_probs=0.0
Q ss_pred ceeEEEEcccccccchhhHHHHHHHh-cccCeEEEEec
Q 001825 906 GWFRVVLDEAQSIKNHRTQVARACWG-LRAKRRWCLSG 942 (1009)
Q Consensus 906 ~W~RVILDEAH~IKN~~Sq~skAl~~-L~Ak~RW~LTG 942 (1009)
.++.|||||||.+ ...++...+.. ......+++||
T Consensus 78 ~~dvviIDEaq~l--~~~~v~~l~~~l~~~g~~vi~tg 113 (190)
T PRK04296 78 KIDCVLIDEAQFL--DKEQVVQLAEVLDDLGIPVICYG 113 (190)
T ss_pred CCCEEEEEccccC--CHHHHHHHHHHHHHcCCeEEEEe
No 234
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=21.23 E-value=42 Score=42.29 Aligned_cols=72 Identities=18% Similarity=0.180 Sum_probs=0.0
Q ss_pred HHHHhcCCCCcEEEEEcCCCCCCCcccccCCCEEEEehhhhhcccCCCCCCCchhHHHHhhhcCCCCCCcccccccccCC
Q 001825 796 LRNKVTSKGSLSVLVYHGSSRTKDPCELAKFDVVITTYSIVSMEVPKQPLGDKEDEEEKMKIEGEDLPPMYCSSSKKRKC 875 (1009)
Q Consensus 796 I~K~~~~~~~LkVlVy~Gs~R~k~~~~LakyDVVITTYstLs~ev~k~~l~d~dde~ek~~~e~~~~~~~~~ssskkRK~ 875 (1009)
|...+.....++.+-|+++.+.. ..+++|+..|..|-.+-.+
T Consensus 299 iEdLv~lGk~~~~CPYY~SR~av-----p~aqlV~LPYQ~LL~~stR--------------------------------- 340 (821)
T KOG1133|consen 299 IEDLVALGKELRGCPYYASRRAV-----PQAQLVTLPYQLLLHESTR--------------------------------- 340 (821)
T ss_pred HHHHHHhhhhcCCCCchhhhhcc-----ccccEEeccHHHHHhHHHH---------------------------------
Q ss_pred CCCCcccccccCCCCCCcchhhccCcccccceeEEEEcccccccchhhHHHHH
Q 001825 876 PPSSDRKGSKQKKGPDGLLLDIVAGPLAKVGWFRVVLDEAQSIKNHRTQVARA 928 (1009)
Q Consensus 876 ~~~s~kk~s~~kk~~d~~~~d~~~s~L~~i~W~RVILDEAH~IKN~~Sq~skA 928 (1009)
...=..++=..|||||||++-+.-...+-+
T Consensus 341 -----------------------~slgI~LkdsIvIiDEAHNlidti~smhsa 370 (821)
T KOG1133|consen 341 -----------------------KSLGISLKDSIVIIDEAHNLIDTICSMHSA 370 (821)
T ss_pred -----------------------HhcCccccccEEEEechhHHHHHHHHhhhh
No 235
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=21.20 E-value=1.7e+02 Score=31.86 Aligned_cols=40 Identities=20% Similarity=0.196 Sum_probs=24.9
Q ss_pred cceeEEEEcccccccchhhHHHHHHHhcccCe-EEEEeccCCCC
Q 001825 905 VGWFRVVLDEAQSIKNHRTQVARACWGLRAKR-RWCLSGTPIQN 947 (1009)
Q Consensus 905 i~W~RVILDEAH~IKN~~Sq~skAl~~L~Ak~-RW~LTGTPIQN 947 (1009)
-.+..|+|||+|-+ +......+..|.... ++++-|=|-|.
T Consensus 255 ~~~~~i~IDE~QD~---s~~Q~~il~~l~~~~~~~~~vGD~~Qs 295 (315)
T PF00580_consen 255 QRYDHILIDEFQDT---SPLQLRILKKLFKNPENLFIVGDPNQS 295 (315)
T ss_dssp HHSSEEEESSGGG----BHHHHHHHHHHHTTTTTEEEEE-GGG-
T ss_pred hhCCeEEeEccccC---CHHHHHHHHHHHHhhceeEEeCCCCcc
Confidence 46889999999965 334455555553332 48888888775
No 236
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=21.10 E-value=1.3e+03 Score=28.98 Aligned_cols=41 Identities=17% Similarity=0.203 Sum_probs=25.9
Q ss_pred chhHHHHHHHHHhccccCCCCcccEEEcCCCchHHHHHHHHHHH
Q 001825 668 LRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILK 711 (1009)
Q Consensus 668 rPHQkegV~WMlqrE~s~~~~rGGILADEMGLGKTVqaIALIl~ 711 (1009)
.+|.+..+.-++...+-. ..-||.-.-|.|||..+.+++..
T Consensus 21 q~~v~~~L~~~i~~~~~~---hayLf~Gp~G~GKtt~A~~lak~ 61 (576)
T PRK14965 21 QEHVSRTLQNAIDTGRVA---HAFLFTGARGVGKTSTARILAKA 61 (576)
T ss_pred cHHHHHHHHHHHHcCCCC---eEEEEECCCCCCHHHHHHHHHHh
Confidence 445556655555432211 22367889999999998887744
No 237
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=20.43 E-value=3.9e+02 Score=31.41 Aligned_cols=53 Identities=23% Similarity=0.412 Sum_probs=35.6
Q ss_pred EEEEeChh---h-HHHHHHHHHHHhcCCCCcEEEEEcCCCCCCCc-ccc-cCCCEEEEehhhh
Q 001825 780 TLVVCPTS---V-LRQWAEELRNKVTSKGSLSVLVYHGSSRTKDP-CEL-AKFDVVITTYSIV 836 (1009)
Q Consensus 780 TLIVcP~S---L-L~QW~~EI~K~~~~~~~LkVlVy~Gs~R~k~~-~~L-akyDVVITTYstL 836 (1009)
++|+||.- | ..|-..|+.+|+. ++|.+..|....++. ..+ ....+||.|-..+
T Consensus 156 ~~ilVPtrelALQtSqvc~~lskh~~----i~vmvttGGT~lrDDI~Rl~~~VH~~vgTPGRI 214 (459)
T KOG0326|consen 156 AIILVPTRELALQTSQVCKELSKHLG----IKVMVTTGGTSLRDDIMRLNQTVHLVVGTPGRI 214 (459)
T ss_pred EEEEeecchhhHHHHHHHHHHhcccC----eEEEEecCCcccccceeeecCceEEEEcCChhH
Confidence 69999964 2 3778889988876 889888887655432 222 2345677666554
Done!