Query 001825
Match_columns 1009
No_of_seqs 277 out of 1870
Neff 4.9
Searched_HMMs 29240
Date Tue Mar 26 16:46:52 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/001825.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1121-1125//hhsearch_pdb/001825hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mwy_W Chromo domain-containin 1.0 1 1 419.3 6.9 347 520-1007 96-465 (800)
2 1z3i_X Similar to RAD54-like; 1.0 1 1 346.7 10.9 230 662-1006 51-304 (644)
3 1z63_A Helicase of the SNF2/RA 1.0 1 1 326.6 20.5 218 659-1005 31-248 (500)
4 3dmq_A RNA polymerase-associat 1.0 1 1 258.4 12.2 188 663-974 150-346 (968)
5 1wp9_A ATP-dependent RNA helic 1.0 1 1 191.2 13.4 174 664-964 7-185 (494)
6 1rif_A DAR protein, DNA helica 1.0 1 1 157.2 14.5 167 663-961 110-278 (282)
7 2fwr_A DNA repair protein RAD2 1.0 1 1 154.9 14.8 140 664-948 91-232 (472)
8 4a2w_A RIG-I, retinoic acid in 1.0 1 1 152.6 14.5 165 664-949 246-422 (936)
9 2oca_A DAR protein, ATP-depend 1.0 1 1 149.8 14.2 167 664-962 111-279 (510)
10 4a2q_A RIG-I, retinoic acid in 1.0 1 1 148.8 15.0 164 664-948 246-421 (797)
No 1
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=419.34 Aligned_cols=347 Identities=20% Similarity=0.283 Sum_probs=253.5
Q ss_pred CCCCCCCCCCCCCCCCCCCCCC---CCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCC------CCCCCHHCCCCCC
Q ss_conf 1256001222101221001133---556964312466666568789988301203468888------7764100245789
Q 001825 520 ELDGVKEDMEAEIKTRSMASHL---LKLSPESIQSNSSDCKSHVDDEPDICILEDISQPAR------SNQSLVLGKTLSM 590 (1009)
Q Consensus 520 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~e~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~------~~~~~~~~~~~~l 590 (1009)
+++|+|++.||.++.+....+. +..++|+++.+.++.+...+...++.++|||..... .....||+||.+|
T Consensus 96 ~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~e~~e~~~~~~e~~~~~~~~~~~veRii~~~~~~~~~~~~~~~yLvKW~~L 175 (800)
T 3mwy_W 96 QVRGLKRLDNYCKQFIIEDQQVRLDPYVTAEDIEIMDMERERRLDEFEEFHVPERIIDSQRASLEDGTSQLQYLVKWRRL 175 (800)
T ss_dssp SCBTTHHHHHHHHHHTHHHHHHTCSTTSCHHHHHHHHHHHHHHHHHHTTTTCEEEECCCCCEECTTSCEECBCCEEETTS
T ss_pred HCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCCCCCCEEEEEEECCC
T ss_conf 34157999999998632778875189998788888756665420001113534689864113467898865999981578
Q ss_pred CCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHH
Q ss_conf 87647510001598732233555779999999875567899986338999999997116899977799998656788645
Q 001825 591 NRSACSNHSVALGKPVVTSQHSSYSDYPGYPGVPLTGLGGMKSKASDERLILQVAMQGISQPNAEASAPDGVLAVPLLRH 670 (1009)
Q Consensus 591 ~~~~~~~~~~~~~~p~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~der~~l~~~l~~i~~p~~e~~~P~glLkv~LrPH 670 (1009)
+|.+|+|+.........+.+...|..+......+.........+. .... -...|+.....+|+||
T Consensus 176 ~y~~~tWe~~~~~~~~~~~~i~~~~~r~~~~~~~~~~~~~~~~~~--------------~~~~-~~~~p~~~~~~~Lr~y 240 (800)
T 3mwy_W 176 NYDEATWENATDIVKLAPEQVKHFQNRENSKILPQYSSNYTSQRP--------------RFEK-LSVQPPFIKGGELRDF 240 (800)
T ss_dssp CSTTCBCCBHHHHTTTCHHHHHHHHHTTTCTTCSTTCCCCCSCCC--------------CCCC-CSSCCTTCCSSCCCTH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHCCCCCCC--------------CCCC-CCCCCCCCCCCCCCHH
T ss_conf 734264336344333319999999976313447751010345577--------------6400-2569986579975899
Q ss_pred HHHHHHHHHHCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 89999999860105877766489838992179999999997099998876303445431156533443212564311123
Q 001825 671 QRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGIQVNGLDLVKQE 750 (1009)
Q Consensus 671 QkeALaWMLqrE~s~~~~rGGILADEMGLGKTIqaIALIl~~r~~~~~~~~~~k~~~e~l~~de~~d~~~~~~~~~~k~~ 750 (1009)
|++|+.||+...... +||||||+||||||+++|++|....
T Consensus 241 Q~egv~~l~~~~~~~---~~~ILademGlGKT~~ai~~i~~l~------------------------------------- 280 (800)
T 3mwy_W 241 QLTGINWMAFLWSKG---DNGILADEMGLGKTVQTVAFISWLI------------------------------------- 280 (800)
T ss_dssp HHHHHHHHHHHHTTT---CCEEECCCTTSSTTHHHHHHHHHHH-------------------------------------
T ss_pred HHHHHHHHHHHHHCC---CCEEEEECCCCCHHHHHHHHHHHHH-------------------------------------
T ss_conf 999999999985138---9989982787532999999999999-------------------------------------
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHCCCCCCCEEEEECHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCC----------
Q ss_conf 5433335899987530135330179998489993825399999999988147899389998289888881----------
Q 001825 751 SDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDP---------- 820 (1009)
Q Consensus 751 ~~~C~~~~~~~~~~~~~~~~~~~~rpa~~TLIVcP~SLL~QW~~EI~k~~~~~~~LsVlVyhGs~Rtk~~---------- 820 (1009)
......+++|||||.+++.||.+||.+|++ .+.+++|+|....+..
T Consensus 281 ---------------------~~~~~~~~~LIV~P~sll~qW~~E~~~~~p---~~~v~~~~g~~~~r~~~~~~~~~~~~ 336 (800)
T 3mwy_W 281 ---------------------FARRQNGPHIIVVPLSTMPAWLDTFEKWAP---DLNCICYMGNQKSRDTIREYEFYTNP 336 (800)
T ss_dssp ---------------------HHHSCCSCEEEECCTTTHHHHHHHHHHHST---TCCEEECCCSSHHHHHHHHHHSCSCC
T ss_pred ---------------------HHCCCCCCEEEEECCHHHHHHHHHHHHHCC---CCEEEEEECCHHHHHHHHHHHHHCCC
T ss_conf ---------------------860779988999880389999999999779---96499982777778898887762263
Q ss_pred ----CCCCCCCEEEEEHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHH
Q ss_conf ----0016888999830323023688989980468998642089999753466554689999853366567999974101
Q 001825 821 ----CELAKFDVVITTYSIVSMEVPKQPLGDKEDEEEKMKIEGEDLPPMYCSSSKKRKCPPSSDRKGSKQKKGPDGLLLD 896 (1009)
Q Consensus 821 ----~~LakyDVVITTYs~L~~Ev~k~~l~d~dde~ek~~~e~~~~~~~~~s~~kkRK~p~~s~kk~s~~~k~~d~~~~e 896 (1009)
....+++||||||+++..+.
T Consensus 337 ~~~~~~~~~~dvvitTy~~l~~~~-------------------------------------------------------- 360 (800)
T 3mwy_W 337 RAKGKKTMKFNVLLTTYEYILKDR-------------------------------------------------------- 360 (800)
T ss_dssp -----CCCCCSEEEECTTHHHHTH--------------------------------------------------------
T ss_pred CCCCCCCCCCCEEEECHHHHHHHH--------------------------------------------------------
T ss_conf 001344566788990699998649--------------------------------------------------------
Q ss_pred HCCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCC
Q ss_conf 00486542110199975621025622299999981336839999145878999999999986078998875777743324
Q 001825 897 IVAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAVYKSFCSMIKV 976 (1009)
Q Consensus 897 ~~~spL~~i~W~RVILDEAH~IKN~~Sq~skAl~~LrAkrRWlLTGTPIQNsL~DLySLLrFLrp~pf~~~k~F~~~i~~ 976 (1009)
..|..+.|.+||+||||++||..++.++++..+++.+||+|||||+||++.|||++++||.|+.|.....|.....
T Consensus 361 ---~~l~~~~w~~vIvDEaH~lkn~~s~~~~~l~~l~~~~rl~LTgTPiqN~l~el~~ll~fL~p~~~~~~~~~~~~~~- 436 (800)
T 3mwy_W 361 ---AELGSIKWQFMAVDEAHRLKNAESSLYESLNSFKVANRMLITGTPLQNNIKELAALVNFLMPGRFTIDQEIDFENQ- 436 (800)
T ss_dssp ---HHHHTSEEEEEEETTGGGGCCSSSHHHHHHTTSEEEEEEEECSCCCSSCSHHHHHHHHHHCSCCC---------CC-
T ss_pred ---HHHHCCCCCEEEHHHHHHHCCCHHHHHHHHHHHHHCCEEEEECCCCCCCHHHHHHHHHHHCCCCCCCHHHHCCCCC-
T ss_conf ---9983377325641344441471019999999752243897227857799999999999858663674344232223-
Q ss_pred CCCCCCHHHHHHHHHHHHHCCCCCCCCHHHH
Q ss_conf 4567825659999999710010011010200
Q 001825 977 PISKNPVKGYKKLQAVLKTIMLRRTKGEDCL 1007 (1009)
Q Consensus 977 Pier~~~~~~krLq~vLk~iMLRRTK~dv~~ 1007 (1009)
.........+|+.+|+++|+||+|.++..
T Consensus 437 --~~~~~~~~~~L~~~l~p~~lRR~k~dv~~ 465 (800)
T 3mwy_W 437 --DEEQEEYIHDLHRRIQPFILRRLKKDVEK 465 (800)
T ss_dssp --TTHHHHHHHHHHHTTGGGEEECCGGGGTT
T ss_pred --CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf --14689999999999757775320876643
No 2
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=1.00 E-value=1 Score=346.70 Aligned_cols=230 Identities=26% Similarity=0.350 Sum_probs=181.8
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCC--CCCCCCEEECCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCCCCCC
Q ss_conf 656788645899999998601058--777664898389921799999999970999988763034454311565334432
Q 001825 662 VLAVPLLRHQRIALSWMVQKETSS--LHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGI 739 (1009)
Q Consensus 662 lLkv~LrPHQkeALaWMLqrE~s~--~~~rGGILADEMGLGKTIqaIALIl~~r~~~~~~~~~~k~~~e~l~~de~~d~~ 739 (1009)
.+...|+|||++|+.||+...... ...+||||||+||||||+++|++|.......
T Consensus 51 ~l~~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~ILad~mGlGKT~~~i~~i~~l~~~~----------------------- 107 (644)
T 1z3i_X 51 VLSKVLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQS----------------------- 107 (644)
T ss_dssp HHHTTCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHHHCC-----------------------
T ss_pred HHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHC-----------------------
T ss_conf 640035199999999999842335445888759610787429999999999999748-----------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCEEEEECHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCC
Q ss_conf 12564311123543333589998753013533017999848999382539999999998814789938999828988888
Q 001825 740 QVNGLDLVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKD 819 (1009)
Q Consensus 740 ~~~~~~~~k~~~~~C~~~~~~~~~~~~~~~~~~~~rpa~~TLIVcP~SLL~QW~~EI~k~~~~~~~LsVlVyhGs~Rtk~ 819 (1009)
.......+++|||||.+++.||.+||.+|++. .+.++.+++..+...
T Consensus 108 -------------------------------~~~~p~~~~~LiV~P~sll~qW~~E~~~~~~~--~~~~~~~~~g~~~~~ 154 (644)
T 1z3i_X 108 -------------------------------PDCKPEIDKVIVVSPSSLVRNWYNEVGKWLGG--RVQPVAIDGGSKDEI 154 (644)
T ss_dssp -------------------------------TTSSCSCSCEEEEECHHHHHHHHHHHHHHHGG--GCCEEEECSSCHHHH
T ss_pred -------------------------------CCCCCCCCCEEEEECHHHHHHHHHHHHHHCCC--CEEEEEEECCCHHHH
T ss_conf -------------------------------66567778579996589988799999997588--725999808988999
Q ss_pred C----------CCCCCCCEEEEEHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 1----------001688899983032302368898998046899864208999975346655468999985336656799
Q 001825 820 P----------CELAKFDVVITTYSIVSMEVPKQPLGDKEDEEEKMKIEGEDLPPMYCSSSKKRKCPPSSDRKGSKQKKG 889 (1009)
Q Consensus 820 ~----------~~LakyDVVITTYs~L~~Ev~k~~l~d~dde~ek~~~e~~~~~~~~~s~~kkRK~p~~s~kk~s~~~k~ 889 (1009)
. .....++|+|+||+++..+.
T Consensus 155 ~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~------------------------------------------------- 185 (644)
T 1z3i_X 155 DSKLVNFISQQGMRIPTPILIISYETFRLHA------------------------------------------------- 185 (644)
T ss_dssp HHHHHHHHCCCSSCCSCCEEEEEHHHHHHHT-------------------------------------------------
T ss_pred HHHHHHHHHHCCCCCCCCEEEEEHHHHHHHH-------------------------------------------------
T ss_conf 9999999873377778757996389987657-------------------------------------------------
Q ss_pred CCCCCHHHCCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCHHH
Q ss_conf 99741010048654211019997562102562229999998133683999914587899999999998607899887577
Q 001825 890 PDGLLLDIVAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAVYKS 969 (1009)
Q Consensus 890 ~d~~~~e~~~spL~~i~W~RVILDEAH~IKN~~Sq~skAl~~LrAkrRWlLTGTPIQNsL~DLySLLrFLrp~pf~~~k~ 969 (1009)
..|....|++||+||||++||..++.++++..+++++||+|||||+||++.|||++++||+|++|+.+..
T Consensus 186 ----------~~l~~~~~~~vI~DEaH~ikn~~~~~~~al~~l~~~~rl~LTgTPiqN~l~El~sll~fl~p~~l~~~~~ 255 (644)
T 1z3i_X 186 ----------EVLHKGKVGLVICDEGHRLKNSDNQTYLALNSMNAQRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAQE 255 (644)
T ss_dssp ----------TTTTTSCCCEEEETTGGGCCTTCHHHHHHHHHHCCSEEEEECSSCSGGGGGGCHHHHHHHHHHHHCCHHH
T ss_pred ----------HHHHCCCCCEEEEECCEECCCHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCCCHHH
T ss_conf ----------8750488657998786224780459999998555673799846734588999999998618876899999
Q ss_pred HHHHHCCCCCCCC------------HHHHHHHHHHHHHCCCCCCCCHHH
Q ss_conf 7743324456782------------565999999971001001101020
Q 001825 970 FCSMIKVPISKNP------------VKGYKKLQAVLKTIMLRRTKGEDC 1006 (1009)
Q Consensus 970 F~~~i~~Pier~~------------~~~~krLq~vLk~iMLRRTK~dv~ 1006 (1009)
|.+.|..|+.++. .....+|+.+++++|+||+|.++.
T Consensus 256 F~~~f~~pi~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~lRR~k~~v~ 304 (644)
T 1z3i_X 256 FKKRFEIPILKGRDADASDKDRAAGEQKLQELISIVNRCLIRRTSDILS 304 (644)
T ss_dssp HHHHTHHHHHHHHSTTCCSHHHHHHHHHHHHHHHHHHHHEECCCGGGGG
T ss_pred HHHHHCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9986326154167767788899999999999999988999871087676
No 3
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=1.00 E-value=1 Score=326.63 Aligned_cols=218 Identities=37% Similarity=0.589 Sum_probs=188.5
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCCCCC
Q ss_conf 99865678864589999999860105877766489838992179999999997099998876303445431156533443
Q 001825 659 PDGVLAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNG 738 (1009)
Q Consensus 659 P~glLkv~LrPHQkeALaWMLqrE~s~~~~rGGILADEMGLGKTIqaIALIl~~r~~~~~~~~~~k~~~e~l~~de~~d~ 738 (1009)
|. .++..|+|||++|+.||...+..+ +||||||+||+|||+++|+++...+
T Consensus 31 p~-~~~~~L~~~Q~~~v~~l~~~~~~~---~~~ilad~~GlGKT~~ai~~i~~~~------------------------- 81 (500)
T 1z63_A 31 PY-NIKANLRPYQIKGFSWMRFMNKLG---FGICLADDMGLGKTLQTIAVFSDAK------------------------- 81 (500)
T ss_dssp CC-SCSSCCCHHHHHHHHHHHHHHHTT---CCEEECCCTTSCHHHHHHHHHHHHH-------------------------
T ss_pred CH-HHHCCCHHHHHHHHHHHHHHHHCC---CCEEEEECCCCCHHHHHHHHHHHHH-------------------------
T ss_conf 83-320033699999999999974179---9889980899738999999999887-------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCEEEEECHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCC
Q ss_conf 21256431112354333358999875301353301799984899938253999999999881478993899982898888
Q 001825 739 IQVNGLDLVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTK 818 (1009)
Q Consensus 739 ~~~~~~~~~k~~~~~C~~~~~~~~~~~~~~~~~~~~rpa~~TLIVcP~SLL~QW~~EI~k~~~~~~~LsVlVyhGs~Rtk 818 (1009)
...+.+++|||||.+++.||.+||.+|.+ .+.+.+++|....
T Consensus 82 ----------------------------------~~~~~~~~LIv~P~~l~~qw~~e~~~~~~---~~~v~~~~g~~~~- 123 (500)
T 1z63_A 82 ----------------------------------KENELTPSLVICPLSVLKNWEEELSKFAP---HLRFAVFHEDRSK- 123 (500)
T ss_dssp ----------------------------------HTTCCSSEEEEECSTTHHHHHHHHHHHCT---TSCEEECSSSTTS-
T ss_pred ----------------------------------HCCCCCCEEEECCHHHHHHHHHHHHHHCC---CCEEEEEECCCHH-
T ss_conf ----------------------------------55899978999038999999999999779---9559997267021-
Q ss_pred CCCCCCCCCEEEEEHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHC
Q ss_conf 81001688899983032302368898998046899864208999975346655468999985336656799997410100
Q 001825 819 DPCELAKFDVVITTYSIVSMEVPKQPLGDKEDEEEKMKIEGEDLPPMYCSSSKKRKCPPSSDRKGSKQKKGPDGLLLDIV 898 (1009)
Q Consensus 819 ~~~~LakyDVVITTYs~L~~Ev~k~~l~d~dde~ek~~~e~~~~~~~~~s~~kkRK~p~~s~kk~s~~~k~~d~~~~e~~ 898 (1009)
.....++|||+||+++..+.
T Consensus 124 --~~~~~~~ivi~t~~~l~~~~---------------------------------------------------------- 143 (500)
T 1z63_A 124 --IKLEDYDIILTTYAVLLRDT---------------------------------------------------------- 143 (500)
T ss_dssp --CCGGGSSEEEEEHHHHTTCH----------------------------------------------------------
T ss_pred --CCCCCCCEEEEEHHHHHCCC----------------------------------------------------------
T ss_conf --00357768996379972630----------------------------------------------------------
Q ss_pred CCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCC
Q ss_conf 48654211019997562102562229999998133683999914587899999999998607899887577774332445
Q 001825 899 AGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAVYKSFCSMIKVPI 978 (1009)
Q Consensus 899 ~spL~~i~W~RVILDEAH~IKN~~Sq~skAl~~LrAkrRWlLTGTPIQNsL~DLySLLrFLrp~pf~~~k~F~~~i~~Pi 978 (1009)
.+....|++||+||||++||..++.++++..+.+++||+|||||++|++.|||++++||+|++|+.+..|.+.|..|+
T Consensus 144 --~l~~~~~~~vIvDEaH~~kn~~~~~~~~l~~l~~~~~l~LTaTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~ 221 (500)
T 1z63_A 144 --RLKEVEWKYIVIDEAQNIKNPQTKIFKAVKELKSKYRIALTGTPIENKVDDLWSIMTFLNPGLLGSYSEFKSKFATPI 221 (500)
T ss_dssp --HHHTCCEEEEEEETGGGGSCTTSHHHHHHHTSCEEEEEEECSSCSTTCHHHHHHHHHHHSTTTTCCHHHHHTTTHHHH
T ss_pred --HHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCC
T ss_conf --211787287998084101787689999999600471899746777799999999999858775799899999852511
Q ss_pred CCCCHHHHHHHHHHHHHCCCCCCCCHH
Q ss_conf 678256599999997100100110102
Q 001825 979 SKNPVKGYKKLQAVLKTIMLRRTKGED 1005 (1009)
Q Consensus 979 er~~~~~~krLq~vLk~iMLRRTK~dv 1005 (1009)
..+......+|+.+++++|+||+|.+.
T Consensus 222 ~~~~~~~~~~l~~~l~~~~lrr~k~~~ 248 (500)
T 1z63_A 222 KKGDNMAKEELKAIISPFILRRTKYDK 248 (500)
T ss_dssp HTTCHHHHHHHHHHHTTTEECCCTTCH
T ss_pred CCCCHHHHHHHHHHHHHHEEEECCCCC
T ss_conf 146688999999997667455025542
No 4
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=1.00 E-value=1 Score=258.36 Aligned_cols=188 Identities=20% Similarity=0.282 Sum_probs=149.4
Q ss_pred CCCCCCHHHHHHHHHHHHCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 56788645899999998601058777664898389921799999999970999988763034454311565334432125
Q 001825 663 LAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGIQVN 742 (1009)
Q Consensus 663 Lkv~LrPHQkeALaWMLqrE~s~~~~rGGILADEMGLGKTIqaIALIl~~r~~~~~~~~~~k~~~e~l~~de~~d~~~~~ 742 (1009)
.++.|+|||++++.|++.+. ..++||||+||+|||+++++++....
T Consensus 150 ~~~~LrpyQ~eav~~~l~~~-----~~~~LLad~tGlGKTi~Ai~~i~~l~----------------------------- 195 (968)
T 3dmq_A 150 QRTSLIPHQLNIAHDVGRRH-----APRVLLADEVGLGKTIEAGMILHQQL----------------------------- 195 (968)
T ss_dssp CSSCCCHHHHHHHHHHHHSS-----SCEEEECCCTTSCHHHHHHHHHHHHH-----------------------------
T ss_pred CCCCCCHHHHHHHHHHHHHC-----CCCEEEECCCCCCHHHHHHHHHHHHH-----------------------------
T ss_conf 89997099999999999705-----89889878999759999999999999-----------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCEEEEECHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCC----C
Q ss_conf 643111235433335899987530135330179998489993825399999999988147899389998289888----8
Q 001825 743 GLDLVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRT----K 818 (1009)
Q Consensus 743 ~~~~~k~~~~~C~~~~~~~~~~~~~~~~~~~~rpa~~TLIVcP~SLL~QW~~EI~k~~~~~~~LsVlVyhGs~Rt----k 818 (1009)
.....+++|||||.+|+.||..|+.+++. +.+.++++.... .
T Consensus 196 ------------------------------~~g~~~rvLIVvP~sLl~Qw~~E~~~~f~----l~v~v~~~~~~~~~~~~ 241 (968)
T 3dmq_A 196 ------------------------------LSGAAERVLIIVPETLQHQWLVEMLRRFN----LRFALFDDERYAEAQHD 241 (968)
T ss_dssp ------------------------------HTSSCCCEEEECCTTTHHHHHHHHHHHSC----CCCEECCHHHHHHHHHT
T ss_pred ------------------------------HHCCCCEEEEEECHHHHHHHHHHHHHHHC----CCEEEECCCHHHHHHHH
T ss_conf ------------------------------81899829999578889999999999869----98799806205554320
Q ss_pred CCCCCCCCCEEEEEHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHC
Q ss_conf 81001688899983032302368898998046899864208999975346655468999985336656799997410100
Q 001825 819 DPCELAKFDVVITTYSIVSMEVPKQPLGDKEDEEEKMKIEGEDLPPMYCSSSKKRKCPPSSDRKGSKQKKGPDGLLLDIV 898 (1009)
Q Consensus 819 ~~~~LakyDVVITTYs~L~~Ev~k~~l~d~dde~ek~~~e~~~~~~~~~s~~kkRK~p~~s~kk~s~~~k~~d~~~~e~~ 898 (1009)
....+..++|||+||+++......
T Consensus 242 ~~~~~~~~dIvI~T~~~L~~~~~~-------------------------------------------------------- 265 (968)
T 3dmq_A 242 AYNPFDTEQLVICSLDFARRSKQR-------------------------------------------------------- 265 (968)
T ss_dssp TCSSSTTCSEEEECHHHHHTSTTT--------------------------------------------------------
T ss_pred CCCCCCCCCEEEECHHHHHHCHHH--------------------------------------------------------
T ss_conf 036445689899768998648788--------------------------------------------------------
Q ss_pred CCCCCCCCEEEEEECCCCCCCCHHHH---HHHHHHHC--CCCEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHH
Q ss_conf 48654211019997562102562229---99999813--36839999145878999999999986078998875777743
Q 001825 899 AGPLAKVGWFRVVLDEAQSIKNHRTQ---VARACWGL--RAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAVYKSFCSM 973 (1009)
Q Consensus 899 ~spL~~i~W~RVILDEAH~IKN~~Sq---~skAl~~L--rAkrRWlLTGTPIQNsL~DLySLLrFLrp~pf~~~k~F~~~ 973 (1009)
...+....|++||+||||++||..+. .++++..+ +++++|+|||||++|++.|+|++++||.++.|..+..|...
T Consensus 266 ~~~l~~~~~dlVIvDEAH~~kn~~~~~s~~~~~l~~L~~~~~~~L~LTATPi~n~~~el~sll~~L~p~~~~~~~~f~~~ 345 (968)
T 3dmq_A 266 LEHLCEAEWDLLVVDEAHHLVWSEDAPSREYQAIEQLAEHVPGVLLLTATPEQLGMESHFARLRLLDPNRFHDFAQFVEE 345 (968)
T ss_dssp THHHHTSCCCEEEECCSSCCCCBTTBCCHHHHHHHHHHTTCSSEEESCSSCSSSCSSCTHHHHHHHCTTTCSSTHHHHHH
T ss_pred HHHHHHCCCCEEEEHHHHHHCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHH
T ss_conf 88764158778974446762588875429999999986257858999768766987999999982593011898999999
Q ss_pred H
Q ss_conf 3
Q 001825 974 I 974 (1009)
Q Consensus 974 i 974 (1009)
+
T Consensus 346 ~ 346 (968)
T 3dmq_A 346 Q 346 (968)
T ss_dssp H
T ss_pred H
T ss_conf 9
No 5
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=1.00 E-value=1 Score=191.23 Aligned_cols=174 Identities=16% Similarity=0.185 Sum_probs=128.8
Q ss_pred CCCCCHHHHHHHHHHHHCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 67886458999999986010587776648983899217999999999709999887630344543115653344321256
Q 001825 664 AVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGIQVNG 743 (1009)
Q Consensus 664 kv~LrPHQkeALaWMLqrE~s~~~~rGGILADEMGLGKTIqaIALIl~~r~~~~~~~~~~k~~~e~l~~de~~d~~~~~~ 743 (1009)
..+|+|||++++.|+++. ++||+++||+|||+++++++....
T Consensus 7 ~~~l~~~Q~~~i~~~~~~--------~~ll~~~tG~GKT~~~~~~~~~~~------------------------------ 48 (494)
T 1wp9_A 7 LIQPRIYQEVIYAKCKET--------NCLIVLPTGLGKTLIAMMIAEYRL------------------------------ 48 (494)
T ss_dssp HHCCCHHHHHHHHHGGGS--------CEEEECCTTSCHHHHHHHHHHHHH------------------------------
T ss_pred CCCCCHHHHHHHHHHHHC--------CEEEECCCCCCHHHHHHHHHHHHH------------------------------
T ss_conf 878639999999999619--------989991899878999999999998------------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCEEEEECH-HHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCC-CC
Q ss_conf 4311123543333589998753013533017999848999382-539999999998814789938999828988888-10
Q 001825 744 LDLVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPT-SVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKD-PC 821 (1009)
Q Consensus 744 ~~~~k~~~~~C~~~~~~~~~~~~~~~~~~~~rpa~~TLIVcP~-SLL~QW~~EI~k~~~~~~~LsVlVyhGs~Rtk~-~~ 821 (1009)
. .+.+++|||||. +|+.||.+|+.+++. .....+.+++|...... ..
T Consensus 49 -----------------------------~-~~~~~~liv~P~~~L~~q~~~~~~~~~~-~~~~~v~~~~g~~~~~~~~~ 97 (494)
T 1wp9_A 49 -----------------------------T-KYGGKVLMLAPTKPLVLQHAESFRRLFN-LPPEKIVALTGEKSPEERSK 97 (494)
T ss_dssp -----------------------------H-HSCSCEEEECSSHHHHHHHHHHHHHHBC-SCGGGEEEECSCSCHHHHHH
T ss_pred -----------------------------H-CCCCEEEEEECCHHHHHHHHHHHHHHHC-CCHHHEEEEECCCCHHHHHH
T ss_conf -----------------------------6-4798599997888999999999998747-56111687607753355665
Q ss_pred CCCCCCEEEEEHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCC
Q ss_conf 01688899983032302368898998046899864208999975346655468999985336656799997410100486
Q 001825 822 ELAKFDVVITTYSIVSMEVPKQPLGDKEDEEEKMKIEGEDLPPMYCSSSKKRKCPPSSDRKGSKQKKGPDGLLLDIVAGP 901 (1009)
Q Consensus 822 ~LakyDVVITTYs~L~~Ev~k~~l~d~dde~ek~~~e~~~~~~~~~s~~kkRK~p~~s~kk~s~~~k~~d~~~~e~~~sp 901 (1009)
.+..++|+|+||+.+...... ..
T Consensus 98 ~~~~~~ivv~T~~~l~~~~~~---------------------------------------------------------~~ 120 (494)
T 1wp9_A 98 AWARAKVIVATPQTIENDLLA---------------------------------------------------------GR 120 (494)
T ss_dssp HHHHCSEEEECHHHHHHHHHT---------------------------------------------------------TS
T ss_pred HCCCCCEEEECHHHHHHHHHC---------------------------------------------------------CC
T ss_conf 335798999639999999860---------------------------------------------------------87
Q ss_pred CCCCCEEEEEECCCCCCCCHHHHHH--HH-HHHCCCCEEEEEECCCCCCCHHHHHHHHHHHCCCCC
Q ss_conf 5421101999756210256222999--99-981336839999145878999999999986078998
Q 001825 902 LAKVGWFRVVLDEAQSIKNHRTQVA--RA-CWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPF 964 (1009)
Q Consensus 902 L~~i~W~RVILDEAH~IKN~~Sq~s--kA-l~~LrAkrRWlLTGTPIQNsL~DLySLLrFLrp~pf 964 (1009)
+....|.+||+||||.+++...... +. .......++|+|||||. |+..+++.++.+|.....
T Consensus 121 ~~~~~~~~vIiDEaH~~~~~~~~~~~~~~~~~~~~~~~~l~lTaTp~-~~~~~~~~l~~~l~~~~~ 185 (494)
T 1wp9_A 121 ISLEDVSLIVFDEAHRAVGNYAYVFIAREYKRQAKNPLVIGLTASPG-STPEKIMEVINNLGIEHI 185 (494)
T ss_dssp CCTTSCSEEEEETGGGCSTTCHHHHHHHHHHHHCSSCCEEEEESCSC-SSHHHHHHHHHHTTCCEE
T ss_pred CCHHHCEEEEEECCCCCCCCCCHHHHHHHHHHCCCCCEEEEEECCCC-CCCHHHHHHHHHCCHHEE
T ss_conf 15654108999787566888819999999973288776999956998-885789999985070005
No 6
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=1.00 E-value=1 Score=157.24 Aligned_cols=167 Identities=15% Similarity=0.104 Sum_probs=119.1
Q ss_pred CCCCCCHHHHHHHHHHHHCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 56788645899999998601058777664898389921799999999970999988763034454311565334432125
Q 001825 663 LAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGIQVN 742 (1009)
Q Consensus 663 Lkv~LrPHQkeALaWMLqrE~s~~~~rGGILADEMGLGKTIqaIALIl~~r~~~~~~~~~~k~~~e~l~~de~~d~~~~~ 742 (1009)
....|+|||.+++.+++.. +.+||+++||+|||+++++++....
T Consensus 110 ~~~~l~~~Q~~ai~~~l~~-------~~~ll~~~tGsGKT~~~~~~~~~~~----------------------------- 153 (282)
T 1rif_A 110 KRIEPHWYQKDAVFEGLVN-------RRRILNLPTSAGRSLIQALLARYYL----------------------------- 153 (282)
T ss_dssp EECCCCHHHHHHHHHHHHH-------SEEEECCCTTSCHHHHHHHHHHHHH-----------------------------
T ss_pred CCCCCCHHHHHHHHHHHHC-------CCEEEECCCCCCCHHHHHHHHHHHH-----------------------------
T ss_conf 7167569999999999846-------9859980799973899999999999-----------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCEEEEECH-HHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCC
Q ss_conf 64311123543333589998753013533017999848999382-53999999999881478993899982898888810
Q 001825 743 GLDLVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPT-SVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPC 821 (1009)
Q Consensus 743 ~~~~~k~~~~~C~~~~~~~~~~~~~~~~~~~~rpa~~TLIVcP~-SLL~QW~~EI~k~~~~~~~LsVlVyhGs~Rtk~~~ 821 (1009)
. ...+++|||||. +|+.||.+++.++.. .....+..+.+...... .
T Consensus 154 -----------------------------~--~~~~~~lil~Pt~~L~~q~~~~l~~~~~-~~~~~~~~~~~~~~~~~-~ 200 (282)
T 1rif_A 154 -----------------------------E--NYEGKILIIVPTTALTTQMADDFVDYRL-FSHAMIKKIGGGASKDD-K 200 (282)
T ss_dssp -----------------------------H--HCSSEEEEECSSHHHHHHHHHHHHHHTS-CCGGGEEECSTTCSSTT-C
T ss_pred -----------------------------H--CCCCEEEEEECCHHHHHHHHHHHHHHCC-CCCCEEEEEECCCCCHH-H
T ss_conf -----------------------------7--6897599997979999999999998535-45632799868985022-2
Q ss_pred CCCCCCEEEEEHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCC
Q ss_conf 01688899983032302368898998046899864208999975346655468999985336656799997410100486
Q 001825 822 ELAKFDVVITTYSIVSMEVPKQPLGDKEDEEEKMKIEGEDLPPMYCSSSKKRKCPPSSDRKGSKQKKGPDGLLLDIVAGP 901 (1009)
Q Consensus 822 ~LakyDVVITTYs~L~~Ev~k~~l~d~dde~ek~~~e~~~~~~~~~s~~kkRK~p~~s~kk~s~~~k~~d~~~~e~~~sp 901 (1009)
.....+|+|+||+.+.....
T Consensus 201 ~~~~~~I~v~T~~~l~~~~~------------------------------------------------------------ 220 (282)
T 1rif_A 201 YKNDAPVVVGTWQTVVKQPK------------------------------------------------------------ 220 (282)
T ss_dssp CCTTCSEEEECHHHHTTSCG------------------------------------------------------------
T ss_pred HCCCCCEEEECHHHHHHHHH------------------------------------------------------------
T ss_conf 03588299976699875478------------------------------------------------------------
Q ss_pred CCCCCEEEEEECCCCCCCCHHHHHHHHHHHC-CCCEEEEEECCCCCCCHHHHHHHHHHHCC
Q ss_conf 5421101999756210256222999999813-36839999145878999999999986078
Q 001825 902 LAKVGWFRVVLDEAQSIKNHRTQVARACWGL-RAKRRWCLSGTPIQNAIDDLYSYFRFLRY 961 (1009)
Q Consensus 902 L~~i~W~RVILDEAH~IKN~~Sq~skAl~~L-rAkrRWlLTGTPIQNsL~DLySLLrFLrp 961 (1009)
.....|..||+||||++++. .....+..+ ...++++|||||. |...+++.++.++++
T Consensus 221 ~~~~~~~~vIiDEaH~~~~~--~~~~il~~~~~~~~~l~lSATp~-~~~~~~~~l~~l~g~ 278 (282)
T 1rif_A 221 EWFSQFGMMMNDECHLATGK--SISSIISGLNNCMFKFGLSGSLR-DGKANIMQYVGMFGE 278 (282)
T ss_dssp GGGGGEEEEEEETGGGCCHH--HHHHHTTTCTTCCEEEEECSSCC-TTSTTHHHHHHHHCE
T ss_pred HHHHHCCEEEEECCCCCCCC--CHHHHHHHHHCCCEEEEEECCCC-CCCHHHHHHHHHCCC
T ss_conf 78863899999897037853--29999997411776999927999-850579999986178
No 7
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=1.00 E-value=1 Score=154.94 Aligned_cols=140 Identities=21% Similarity=0.229 Sum_probs=110.1
Q ss_pred CCCCCHHHHHHHHHHHHCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 67886458999999986010587776648983899217999999999709999887630344543115653344321256
Q 001825 664 AVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGIQVNG 743 (1009)
Q Consensus 664 kv~LrPHQkeALaWMLqrE~s~~~~rGGILADEMGLGKTIqaIALIl~~r~~~~~~~~~~k~~~e~l~~de~~d~~~~~~ 743 (1009)
..+|+|||.+++.++++. ..+||+++||+|||++++.++...
T Consensus 91 ~~~l~~~Q~~ai~~i~~~-------~~~ll~~~TGsGKT~~~l~~i~~~------------------------------- 132 (472)
T 2fwr_A 91 EISLRDYQEKALERWLVD-------KRGCIVLPTGSGKTHVAMAAINEL------------------------------- 132 (472)
T ss_dssp CCCBCHHHHHHHHHHTTT-------TEEEEECCTTSCHHHHHHHHHHHH-------------------------------
T ss_pred CCCCCHHHHHHHHHHHHC-------CCEEEEECCCCCHHHHHHHHHHHC-------------------------------
T ss_conf 998688999999999965-------987999699998899999999980-------------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCEEEEECH-HHHHHHHHHHHHHHCCCCCCE-EEEECCCCCCCCCC
Q ss_conf 4311123543333589998753013533017999848999382-539999999998814789938-99982898888810
Q 001825 744 LDLVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPT-SVLRQWAEELRNKVTSKGSLS-VLVYHGSSRTKDPC 821 (1009)
Q Consensus 744 ~~~~k~~~~~C~~~~~~~~~~~~~~~~~~~~rpa~~TLIVcP~-SLL~QW~~EI~k~~~~~~~Ls-VlVyhGs~Rtk~~~ 821 (1009)
.+++|||||. +|+.||.+++.+ ++ +. +.+++|....
T Consensus 133 ---------------------------------~~~~Lvl~P~~~L~~Q~~~~~~~-~~----~~~v~~~~g~~~~---- 170 (472)
T 2fwr_A 133 ---------------------------------STPTLIVVPTLALAEQWKERLGI-FG----EEYVGEFSGRIKE---- 170 (472)
T ss_dssp ---------------------------------CSCEEEEESSHHHHHHHHHHGGG-GC----GGGEEEBSSSCBC----
T ss_pred ---------------------------------CCCEEEEECCHHHHHHHHHHHHH-CC----CCCEEEECCCCCC----
T ss_conf ---------------------------------99999998799999999999996-79----9636998787677----
Q ss_pred CCCCCCEEEEEHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCC
Q ss_conf 01688899983032302368898998046899864208999975346655468999985336656799997410100486
Q 001825 822 ELAKFDVVITTYSIVSMEVPKQPLGDKEDEEEKMKIEGEDLPPMYCSSSKKRKCPPSSDRKGSKQKKGPDGLLLDIVAGP 901 (1009)
Q Consensus 822 ~LakyDVVITTYs~L~~Ev~k~~l~d~dde~ek~~~e~~~~~~~~~s~~kkRK~p~~s~kk~s~~~k~~d~~~~e~~~sp 901 (1009)
..+|+|+||+.+.....
T Consensus 171 ---~~~Ivv~T~~~l~~~~~------------------------------------------------------------ 187 (472)
T 2fwr_A 171 ---LKPLTVSTYDSAYVNAE------------------------------------------------------------ 187 (472)
T ss_dssp ---CCSEEEEEHHHHHHTHH------------------------------------------------------------
T ss_pred ---CCCEEEEECHHHHHHHH------------------------------------------------------------
T ss_conf ---67789997689997799------------------------------------------------------------
Q ss_pred CCCCCEEEEEECCCCCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCC
Q ss_conf 54211019997562102562229999998133683999914587899
Q 001825 902 LAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNA 948 (1009)
Q Consensus 902 L~~i~W~RVILDEAH~IKN~~Sq~skAl~~LrAkrRWlLTGTPIQNs 948 (1009)
...-.|..||+||+|.+.+...+ +.+..+.+.++++|||||.++.
T Consensus 188 ~~~~~~~liIvDEaH~~~~~~~~--~~~~~~~~~~~l~lSATp~~~~ 232 (472)
T 2fwr_A 188 KLGNRFMLLIFDEVHHLPAESYV--QIAQMSIAPFRLGLTATFERED 232 (472)
T ss_dssp HHTTTCSEEEEETGGGTTSTTTH--HHHHTCCCSEEEEEESCCCCTT
T ss_pred HHCCCCCEEEEECCCCCCCHHHH--HHHHHCCCCEEEEEECCCCCCC
T ss_conf 73687778999897578976899--9997357781899932766889
No 8
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=1.00 E-value=1 Score=152.56 Aligned_cols=165 Identities=13% Similarity=0.093 Sum_probs=115.4
Q ss_pred CCCCCHHHHHHHHHHHHCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 67886458999999986010587776648983899217999999999709999887630344543115653344321256
Q 001825 664 AVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGIQVNG 743 (1009)
Q Consensus 664 kv~LrPHQkeALaWMLqrE~s~~~~rGGILADEMGLGKTIqaIALIl~~r~~~~~~~~~~k~~~e~l~~de~~d~~~~~~ 743 (1009)
...|+|||.+++.|++.. +.+|++++||+|||++++..++.....
T Consensus 246 ~~~~r~~Q~~ai~~il~g-------~~~ll~a~TGsGKTl~~~~~i~~~l~~---------------------------- 290 (936)
T 4a2w_A 246 TKKARSYQIELAQPAING-------KNALICAPTGSGKTFVSILICEHHFQN---------------------------- 290 (936)
T ss_dssp --CCCHHHHHHHHHHHTT-------CCEEEECCTTSCHHHHHHHHHHTTTTT----------------------------
T ss_pred CCCCCHHHHHHHHHHHCC-------CCEEEEECCCCHHHHHHHHHHHHHHHH----------------------------
T ss_conf 898779999999999809-------989999699845999999999999973----------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCEEEEECHH-HHHHHHHHHHHHHCCCCCCEEEEECCCCCCCC--C
Q ss_conf 43111235433335899987530135330179998489993825-39999999998814789938999828988888--1
Q 001825 744 LDLVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTS-VLRQWAEELRNKVTSKGSLSVLVYHGSSRTKD--P 820 (1009)
Q Consensus 744 ~~~~k~~~~~C~~~~~~~~~~~~~~~~~~~~rpa~~TLIVcP~S-LL~QW~~EI~k~~~~~~~LsVlVyhGs~Rtk~--~ 820 (1009)
......+++|||||.. |+.||.+++.++++ ...+.+.+++|...... .
T Consensus 291 ----------------------------~~~~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~-~~~~~v~~~~G~~~~~~~~~ 341 (936)
T 4a2w_A 291 ----------------------------MPAGRKAKVVFLATKVPVYEQQKNVFKHHFE-RQGYSVQGISGENFSNVSVE 341 (936)
T ss_dssp ----------------------------CCSSCCCCEEEECSSHHHHHHHHHHHHHHHH-TTTCCEEEECCC-----CCH
T ss_pred ----------------------------CCCCCCCEEEEEECCHHHHHHHHHHHHHHHC-CCCCEEEEEECCCCHHHHHH
T ss_conf ----------------------------6556898599996989999999999999712-16955999979963125789
Q ss_pred CCCCCCCEEEEEHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCC
Q ss_conf 00168889998303230236889899804689986420899997534665546899998533665679999741010048
Q 001825 821 CELAKFDVVITTYSIVSMEVPKQPLGDKEDEEEKMKIEGEDLPPMYCSSSKKRKCPPSSDRKGSKQKKGPDGLLLDIVAG 900 (1009)
Q Consensus 821 ~~LakyDVVITTYs~L~~Ev~k~~l~d~dde~ek~~~e~~~~~~~~~s~~kkRK~p~~s~kk~s~~~k~~d~~~~e~~~s 900 (1009)
.....++|+|+|++.+...... .
T Consensus 342 ~~~~~~~IvI~Tp~~L~~~l~~---------------------------------------------------------~ 364 (936)
T 4a2w_A 342 KVIEDSDIIVVTPQILVNSFED---------------------------------------------------------G 364 (936)
T ss_dssp HHHHHCSEEEECHHHHHHHHHS---------------------------------------------------------S
T ss_pred HHCCCCCEEEECHHHHHHHHHC---------------------------------------------------------C
T ss_conf 7416999999449999999871---------------------------------------------------------7
Q ss_pred CC-CCCCEEEEEECCCCCCCCHHHHHHHHHHHC--------CCCEEEEEECCCCCCCH
Q ss_conf 65-421101999756210256222999999813--------36839999145878999
Q 001825 901 PL-AKVGWFRVVLDEAQSIKNHRTQVARACWGL--------RAKRRWCLSGTPIQNAI 949 (1009)
Q Consensus 901 pL-~~i~W~RVILDEAH~IKN~~Sq~skAl~~L--------rAkrRWlLTGTPIQNsL 949 (1009)
.+ ....|..||+||||.+++.......+...+ ...++++|||||.+++.
T Consensus 365 ~~~~l~~~~liViDEaH~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~LSATp~~~~~ 422 (936)
T 4a2w_A 365 TLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQKFNSASQLPQILGLTASVGVGNA 422 (936)
T ss_dssp SCCCGGGCSEEEEETGGGCSTTCHHHHHHHHHHHHHHTTCSCCCEEEEEESCCCCTTC
T ss_pred CCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCC
T ss_conf 6453367879999873135998669999999999863137886739986388554540
No 9
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=1.00 E-value=1 Score=149.82 Aligned_cols=167 Identities=15% Similarity=0.112 Sum_probs=118.8
Q ss_pred CCCCCHHHHHHHHHHHHCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 67886458999999986010587776648983899217999999999709999887630344543115653344321256
Q 001825 664 AVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGIQVNG 743 (1009)
Q Consensus 664 kv~LrPHQkeALaWMLqrE~s~~~~rGGILADEMGLGKTIqaIALIl~~r~~~~~~~~~~k~~~e~l~~de~~d~~~~~~ 743 (1009)
...|+|||..++.++++. +.++|+++||+|||++++.++....
T Consensus 111 ~~~l~~~Q~~ai~~~~~~-------~~~ll~~~tGsGKT~~~~~~~~~~~------------------------------ 153 (510)
T 2oca_A 111 RIEPHWYQKDAVFEGLVN-------RRRILNLPTSAGRSLIQALLARYYL------------------------------ 153 (510)
T ss_dssp EECCCHHHHHHHHHHHHH-------SEEEEECCSTTTHHHHHHHHHHHHH------------------------------
T ss_pred CCCCCHHHHHHHHHHHHC-------CCCEEEECCCCCHHHHHHHHHHHHH------------------------------
T ss_conf 788779999999999962-------9928991899988999999999998------------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCEEEEECH-HHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCC
Q ss_conf 4311123543333589998753013533017999848999382-539999999998814789938999828988888100
Q 001825 744 LDLVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPT-SVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCE 822 (1009)
Q Consensus 744 ~~~~k~~~~~C~~~~~~~~~~~~~~~~~~~~rpa~~TLIVcP~-SLL~QW~~EI~k~~~~~~~LsVlVyhGs~Rtk~~~~ 822 (1009)
. ...+.+|||||. .|+.||.+++.++.. .....+..++|....... .
T Consensus 154 ----------------------------~--~~~~~vlvl~P~~~L~~Q~~~~~~~~~~-~~~~~v~~~~~~~~~~~~-~ 201 (510)
T 2oca_A 154 ----------------------------E--NYEGKILIIVPTTALTTQMADDFVDYRL-FSHAMIKKIGGGASKDDK-Y 201 (510)
T ss_dssp ----------------------------H--HCSSEEEEEESSHHHHHHHHHHHHHTTS-SCGGGEEECGGGCCTTGG-G
T ss_pred ----------------------------H--CCCCEEEEEECCHHHHHHHHHHHHHHHC-CCCCCEEEEECCCCCCCC-C
T ss_conf ----------------------------6--7898099997969999999999998606-786525999668765343-4
Q ss_pred CCCCCEEEEEHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCC
Q ss_conf 16888999830323023688989980468998642089999753466554689999853366567999974101004865
Q 001825 823 LAKFDVVITTYSIVSMEVPKQPLGDKEDEEEKMKIEGEDLPPMYCSSSKKRKCPPSSDRKGSKQKKGPDGLLLDIVAGPL 902 (1009)
Q Consensus 823 LakyDVVITTYs~L~~Ev~k~~l~d~dde~ek~~~e~~~~~~~~~s~~kkRK~p~~s~kk~s~~~k~~d~~~~e~~~spL 902 (1009)
....+|+|+|++.+..... .
T Consensus 202 ~~~~~I~i~T~~~l~~~~~------------------------------------------------------------~ 221 (510)
T 2oca_A 202 KNDAPVVVGTWQTVVKQPK------------------------------------------------------------E 221 (510)
T ss_dssp CTTCSEEEEEHHHHTTSCG------------------------------------------------------------G
T ss_pred CCCCCEEEEEHHHHHHCHH------------------------------------------------------------H
T ss_conf 6688399982999741335------------------------------------------------------------5
Q ss_pred CCCCEEEEEECCCCCCCCHHHHHHHHHHHC-CCCEEEEEECCCCCCCHHHHHHHHHHHCCC
Q ss_conf 421101999756210256222999999813-368399991458789999999999860789
Q 001825 903 AKVGWFRVVLDEAQSIKNHRTQVARACWGL-RAKRRWCLSGTPIQNAIDDLYSYFRFLRYD 962 (1009)
Q Consensus 903 ~~i~W~RVILDEAH~IKN~~Sq~skAl~~L-rAkrRWlLTGTPIQNsL~DLySLLrFLrp~ 962 (1009)
.--.|..||+||+|.+++.. ..+.+..+ .+.++++||||| .+...+++.+..++.+.
T Consensus 222 ~~~~~~liIiDE~H~~~~~~--~~~il~~~~~~~~~l~lSATp-~~~~~~~~~~~~~~~~~ 279 (510)
T 2oca_A 222 WFSQFGMMMNDECHLATGKS--ISSIISGLNNCMFKFGLSGSL-RDGKANIMQYVGMFGEI 279 (510)
T ss_dssp GGGGEEEEEEETGGGCCHHH--HHHHGGGCTTCCEEEEEESCG-GGCSSCHHHHHHHHCSE
T ss_pred HHHCCCEEEEECCCCCCCCC--HHHHHHHCCCCCEEEEEEECC-CCCCCCHHHHHHHHCCE
T ss_conf 54227889998986778633--999998610375799997079-87763187767763885
No 10
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=1.00 E-value=1 Score=148.84 Aligned_cols=164 Identities=13% Similarity=0.095 Sum_probs=114.5
Q ss_pred CCCCCHHHHHHHHHHHHCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 67886458999999986010587776648983899217999999999709999887630344543115653344321256
Q 001825 664 AVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGIQVNG 743 (1009)
Q Consensus 664 kv~LrPHQkeALaWMLqrE~s~~~~rGGILADEMGLGKTIqaIALIl~~r~~~~~~~~~~k~~~e~l~~de~~d~~~~~~ 743 (1009)
...|+|||..++.+++.. +.+|+++++|+|||++++..++....
T Consensus 246 ~~~l~~~Q~~~i~~~l~~-------~~~ll~~~TGsGKTl~~~~~i~~~l~----------------------------- 289 (797)
T 4a2q_A 246 TKKARSYQIELAQPAING-------KNALICAPTGSGKTFVSILICEHHFQ----------------------------- 289 (797)
T ss_dssp --CCCHHHHHHHHHHHTT-------CCEEEECCTTSCHHHHHHHHHHHHHH-----------------------------
T ss_pred CCCCCHHHHHHHHHHHHC-------CCEEEEECCCCHHHHHHHHHHHHHHH-----------------------------
T ss_conf 899999999999999809-------99899969997299999999999998-----------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCEEEEECH-HHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCC--C
Q ss_conf 4311123543333589998753013533017999848999382-539999999998814789938999828988888--1
Q 001825 744 LDLVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPT-SVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKD--P 820 (1009)
Q Consensus 744 ~~~~k~~~~~C~~~~~~~~~~~~~~~~~~~~rpa~~TLIVcP~-SLL~QW~~EI~k~~~~~~~LsVlVyhGs~Rtk~--~ 820 (1009)
.......+++|||||. .|+.||.+++.++++. ..+.+..++|...... .
T Consensus 290 ---------------------------~~~~~~~~~~Lvl~Pt~~L~~Q~~~~~~~~~~~-~~~~v~~~~g~~~~~~~~~ 341 (797)
T 4a2q_A 290 ---------------------------NMPAGRKAKVVFLATKVPVYEQQKNVFKHHFER-QGYSVQGISGENFSNVSVE 341 (797)
T ss_dssp ---------------------------TCCSSCCCCEEEECSSHHHHHHHHHHHHHHHGG-GTCCEEEECCC-----CHH
T ss_pred ---------------------------HCCCCCCCEEEEEECCHHHHHHHHHHHHHHCCC-CCCEEEEEECCCCHHHHHH
T ss_conf ---------------------------466567996999969899999999999986143-7946999969962324699
Q ss_pred CCCCCCCEEEEEHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCC
Q ss_conf 00168889998303230236889899804689986420899997534665546899998533665679999741010048
Q 001825 821 CELAKFDVVITTYSIVSMEVPKQPLGDKEDEEEKMKIEGEDLPPMYCSSSKKRKCPPSSDRKGSKQKKGPDGLLLDIVAG 900 (1009)
Q Consensus 821 ~~LakyDVVITTYs~L~~Ev~k~~l~d~dde~ek~~~e~~~~~~~~~s~~kkRK~p~~s~kk~s~~~k~~d~~~~e~~~s 900 (1009)
.....++|+|+|++.+...+.. .
T Consensus 342 ~~~~~~~Ivv~Tp~~l~~~l~~---------------------------------------------------------~ 364 (797)
T 4a2q_A 342 KVIEDSDIIVVTPQILVNSFED---------------------------------------------------------G 364 (797)
T ss_dssp HHHHTCSEEEECHHHHHHHHHS---------------------------------------------------------S
T ss_pred HHHCCCCEEEECHHHHHHHHHH---------------------------------------------------------C
T ss_conf 7407999999766999999982---------------------------------------------------------6
Q ss_pred CC-CCCCEEEEEECCCCCCCCHHHHHHHHHHHC--------CCCEEEEEECCCCCCC
Q ss_conf 65-421101999756210256222999999813--------3683999914587899
Q 001825 901 PL-AKVGWFRVVLDEAQSIKNHRTQVARACWGL--------RAKRRWCLSGTPIQNA 948 (1009)
Q Consensus 901 pL-~~i~W~RVILDEAH~IKN~~Sq~skAl~~L--------rAkrRWlLTGTPIQNs 948 (1009)
.+ ....|..||+||||.+.+...........+ ...++++|||||.+++
T Consensus 365 ~~~~~~~~~~iViDEaH~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~lSATp~~~~ 421 (797)
T 4a2q_A 365 TLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQKFNSASQLPQILGLTASVGVGN 421 (797)
T ss_dssp SCCCGGGCSEEEETTGGGCSTTSHHHHHHHHHHHHHHTTCCCCCEEEEEESCCCCTT
T ss_pred CCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCC
T ss_conf 546513377899988635588764999999999976314788785999727755455
Done!