Query 001826
Match_columns 1009
No_of_seqs 325 out of 2156
Neff 6.1
Searched_HMMs 46136
Date Fri Mar 29 10:14:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001826.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001826hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02900 alanyl-tRNA synthetas 100.0 4E-246 9E-251 2232.0 92.6 915 48-985 1-922 (936)
2 KOG0188 Alanyl-tRNA synthetase 100.0 3E-247 6E-252 2083.7 68.8 880 58-998 2-887 (895)
3 COG0013 AlaS Alanyl-tRNA synth 100.0 9E-241 2E-245 2124.7 84.9 855 56-996 4-869 (879)
4 TIGR00344 alaS alanine--tRNA l 100.0 3E-231 7E-236 2097.0 85.1 844 62-980 1-851 (851)
5 PRK00252 alaS alanyl-tRNA synt 100.0 4E-227 8E-232 2069.2 85.2 842 57-985 1-849 (865)
6 TIGR03683 A-tRNA_syn_arch alan 100.0 5E-204 1E-208 1859.5 80.6 788 51-985 49-889 (902)
7 PRK13902 alaS alanyl-tRNA synt 100.0 1E-202 2E-207 1847.6 80.2 788 50-985 51-884 (900)
8 PRK01584 alanyl-tRNA synthetas 100.0 3E-190 6E-195 1657.2 53.7 583 58-797 1-592 (594)
9 PF01411 tRNA-synt_2c: tRNA sy 100.0 3E-174 6E-179 1535.9 15.6 545 62-637 1-552 (552)
10 cd00673 AlaRS_core Alanyl-tRNA 100.0 9E-108 2E-112 852.5 18.4 230 60-306 1-232 (232)
11 COG2872 Predicted metal-depend 100.0 4.9E-45 1.1E-49 387.9 22.2 226 541-802 11-239 (241)
12 PLN02961 alanine-tRNA ligase 100.0 2.7E-44 5.8E-49 383.8 23.8 209 567-796 2-222 (223)
13 KOG2105 Predicted metal-depend 100.0 7.2E-40 1.6E-44 343.9 26.9 377 545-994 24-407 (415)
14 PLN02837 threonine-tRNA ligase 99.9 2.2E-25 4.7E-30 269.8 20.9 213 627-861 30-260 (614)
15 PRK12305 thrS threonyl-tRNA sy 99.9 6.7E-24 1.4E-28 256.4 20.3 200 641-862 7-220 (575)
16 PRK12444 threonyl-tRNA synthet 99.9 7.9E-23 1.7E-27 249.6 21.6 202 640-863 72-289 (639)
17 PRK00413 thrS threonyl-tRNA sy 99.9 1.4E-22 3E-27 247.8 21.7 220 621-862 49-284 (638)
18 PLN02908 threonyl-tRNA synthet 99.9 1.4E-20 3.1E-25 230.9 21.9 202 638-862 117-335 (686)
19 TIGR00418 thrS threonyl-tRNA s 99.9 1.1E-20 2.3E-25 228.1 18.8 198 644-862 1-214 (563)
20 COG0441 ThrS Threonyl-tRNA syn 99.8 7.3E-19 1.6E-23 208.6 15.8 197 640-861 26-233 (589)
21 PF07973 tRNA_SAD: Threonyl an 99.3 2.7E-12 5.8E-17 103.0 5.1 44 735-794 1-44 (44)
22 PRK14799 thrS threonyl-tRNA sy 99.1 3.3E-10 7.2E-15 135.7 9.6 100 759-862 75-182 (545)
23 smart00863 tRNA_SAD Threonyl a 99.0 3.7E-10 8.1E-15 90.4 4.1 44 735-794 1-44 (44)
24 KOG1637 Threonyl-tRNA syntheta 98.9 1.2E-09 2.7E-14 123.6 4.9 135 642-860 68-204 (560)
25 PF02272 DHHA1: DHHA1 domain; 97.1 0.00071 1.5E-08 58.9 4.9 55 922-985 3-58 (68)
26 cd00768 class_II_aaRS-like_cor 96.0 0.021 4.5E-07 59.7 7.8 115 61-183 3-136 (211)
27 PRK09348 glyQ glycyl-tRNA synt 95.4 0.12 2.6E-06 56.0 10.8 177 56-312 2-180 (283)
28 TIGR00388 glyQ glycyl-tRNA syn 94.7 0.22 4.8E-06 54.3 10.6 173 58-312 1-177 (293)
29 PRK14908 glycyl-tRNA synthetas 93.1 0.45 9.7E-06 61.3 10.8 176 56-312 3-181 (1000)
30 cd00733 GlyRS_alpha_core Class 92.8 0.76 1.7E-05 50.0 10.4 173 60-312 2-176 (279)
31 COG0752 GlyQ Glycyl-tRNA synth 91.9 0.88 1.9E-05 49.3 9.4 170 56-312 3-181 (298)
32 cd00669 Asp_Lys_Asn_RS_core As 86.0 1.5 3.3E-05 49.0 6.4 102 61-176 5-116 (269)
33 TIGR00458 aspS_arch aspartyl-t 83.4 11 0.00024 44.9 12.5 99 62-176 138-247 (428)
34 PRK03932 asnC asparaginyl-tRNA 82.9 8.5 0.00018 46.2 11.3 105 61-175 137-254 (450)
35 PF02091 tRNA-synt_2e: Glycyl- 82.1 0.74 1.6E-05 50.4 1.8 172 61-312 2-175 (284)
36 cd00670 Gly_His_Pro_Ser_Thr_tR 81.3 6.5 0.00014 42.2 8.8 106 61-182 6-149 (235)
37 PRK00488 pheS phenylalanyl-tRN 79.0 2.4 5.1E-05 48.8 4.6 39 48-86 97-136 (339)
38 PF01411 tRNA-synt_2c: tRNA sy 76.8 0.47 1E-05 58.2 -1.9 114 179-320 76-200 (552)
39 PRK06462 asparagine synthetase 74.5 14 0.00029 42.8 9.2 107 60-175 33-151 (335)
40 PTZ00450 macrophage migration 71.9 3.7 8.1E-05 40.0 3.3 25 167-191 77-101 (113)
41 TIGR00644 recJ single-stranded 71.7 51 0.0011 40.6 13.8 71 893-972 325-395 (539)
42 KOG1759 Macrophage migration i 64.9 6 0.00013 38.5 3.0 23 170-192 79-101 (115)
43 PF01422 zf-NF-X1: NF-X1 type 60.1 3.8 8.3E-05 27.8 0.5 9 233-241 12-20 (20)
44 KOG1501 Arginine N-methyltrans 59.6 7.5 0.00016 45.7 3.1 80 289-370 72-158 (636)
45 PTZ00397 macrophage migration 55.4 11 0.00023 36.5 3.1 29 164-192 74-102 (116)
46 PTZ00401 aspartyl-tRNA synthet 53.5 15 0.00033 45.2 4.6 98 62-175 218-327 (550)
47 COG0016 PheS Phenylalanyl-tRNA 49.5 16 0.00035 42.0 3.7 36 47-82 99-135 (335)
48 PTZ00326 phenylalanyl-tRNA syn 46.5 42 0.0009 40.8 6.6 122 120-307 358-482 (494)
49 TIGR00470 sepS O-phosphoseryl- 46.0 33 0.00072 41.3 5.6 19 289-307 317-335 (533)
50 PF01187 MIF: Macrophage migra 45.9 14 0.0003 35.7 2.2 24 169-192 77-100 (114)
51 cd00776 AsxRS_core Asx tRNA sy 44.6 25 0.00054 40.4 4.3 101 60-176 27-138 (322)
52 PLN02850 aspartate-tRNA ligase 41.8 28 0.00061 42.8 4.4 101 62-175 230-339 (530)
53 smart00438 ZnF_NFX Repressor o 39.3 13 0.00028 27.0 0.6 11 233-243 12-22 (26)
54 PF01409 tRNA-synt_2d: tRNA sy 38.7 16 0.00034 40.5 1.4 25 60-84 19-43 (247)
55 PLN02853 Probable phenylalanyl 37.2 28 0.00061 42.1 3.3 30 54-83 217-246 (492)
56 KOG2783 Phenylalanyl-tRNA synt 32.6 21 0.00046 41.5 1.2 41 28-76 50-90 (436)
57 COG2024 Phenylalanyl-tRNA synt 30.8 68 0.0015 37.4 4.7 58 237-307 279-343 (536)
58 cd00777 AspRS_core Asp tRNA sy 28.9 30 0.00066 38.9 1.7 103 61-176 5-116 (280)
59 TIGR00462 genX lysyl-tRNA synt 27.6 73 0.0016 36.3 4.4 114 61-190 5-135 (304)
60 PRK11070 ssDNA exonuclease Rec 25.9 6.8E+02 0.015 31.4 12.6 89 894-995 355-447 (575)
61 cd00776 AsxRS_core Asx tRNA sy 24.8 39 0.00085 38.8 1.7 28 288-315 290-317 (322)
62 TIGR00462 genX lysyl-tRNA synt 24.1 41 0.00089 38.3 1.6 24 289-312 278-301 (304)
63 PF01343 Peptidase_S49: Peptid 21.9 93 0.002 31.6 3.6 68 418-485 83-153 (154)
64 PF00152 tRNA-synt_2: tRNA syn 21.8 51 0.0011 37.9 1.8 104 61-174 26-139 (335)
65 PLN02850 aspartate-tRNA ligase 21.1 49 0.0011 40.7 1.6 29 288-316 494-522 (530)
66 PRK03968 DNA primase large sub 21.0 4.4E+02 0.0095 31.1 8.8 78 289-370 34-126 (399)
67 cd00775 LysRS_core Lys_tRNA sy 20.7 1.4E+02 0.003 34.5 5.1 99 61-176 12-123 (329)
68 PTZ00425 asparagine-tRNA ligas 20.0 55 0.0012 40.7 1.7 29 288-316 550-578 (586)
No 1
>PLN02900 alanyl-tRNA synthetase
Probab=100.00 E-value=4.1e-246 Score=2232.03 Aligned_cols=915 Identities=68% Similarity=1.066 Sum_probs=837.6
Q ss_pred ccCCCCCCCCCChhHHHHHHHHhhhhCCCeeecCCCCccCCCCCcccccccccccccccccccCCCCccccccccccccc
Q 001826 48 MPGADPQVVEWPATKVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFANAGMNQYKPIFLGTADPNTQLSKLTRACNTQK 127 (1009)
Q Consensus 48 ~~~~~~~~~~~~~~eiR~~fl~fF~~~gH~~v~s~slvp~~dptllftnAGm~qfk~~flg~~~p~~~~~~~~r~~~~Qk 127 (1009)
||-.|...++|+++|||++||+||++|||+++|||||||+|||||||||||||||||||+|+++|++++++++|+|||||
T Consensus 1 ~~~~~~~~~~~~~~eiR~~Fl~FF~~~gH~~v~s~slvp~~dptllftnAGm~~Fk~~f~G~~~p~~~~~~~~R~~~~Qk 80 (936)
T PLN02900 1 MPEDDAPEKEWPGDRIRRTFLSFFESKGHTFLPSSPLVPVDDPTLLFTNAGMNQFKPIFLGTADPNTPLRKLPRATNTQK 80 (936)
T ss_pred CCCCccccCCCCHHHHHHHHHHHHHhCCCEEeCCCCcCCCCCCCeeeeecchhhhhhhhcCCCCCCCCCCCCCceeeecc
Confidence 78888888999999999999999999999999999999999999999999999999999999999887888999999999
Q ss_pred ccccCCCCCCCCCCCCCCCcccccccccccccccccHHHHHHHHHHHcccccCCCCCceEEEEECCCCcCCCCCcHHHHH
Q 001826 128 CIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWAWELLTKVYRLPADRLYATYFGGDEKAGLAPDNEARD 207 (1009)
Q Consensus 128 CiR~gGkhnDld~VG~t~rH~TfFEMlGn~SfgdYfK~eai~~awe~lt~~l~i~~~rL~vT~~~~~~~~~~~~D~E~~~ 207 (1009)
|||+|||||||||||+|+|||||||||||||||||||+|||.|||||||++|||||+|||||||++|+++ |+|+||++
T Consensus 81 CiR~gGKHnDlenVG~t~rHhTfFEMlGnfSfgdYfK~eaI~~awe~lT~~l~i~~~~l~vTv~~~D~~~--~~d~Ea~~ 158 (936)
T PLN02900 81 CIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKKEAIGWAWELLTKVYGLPADRLYATYFGGDEKQ--APDDEARA 158 (936)
T ss_pred cccCCCCCCCHhhccCCCCchHHHHhhhccchhhhhHHHHHHHHHHHHHHhcCCCHHHEEEEEeCCCCCc--CCCHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999874 99999999
Q ss_pred HHHhcCCCCCcccCCCCCCcccCCCCCCCcCceeEEeecCCCCCCCCCCCCCCCceEEEeeecccccccCCCCccccCCC
Q 001826 208 IWLKFLPASRVLPFGCKDNFWEMGDTGPCGPCSEIHYDRTGNRDAASLVNNDDPTCIEIWNIVFIQFNRESDGSLKPLPA 287 (1009)
Q Consensus 208 iW~~~~~~~~i~~~~~~dNfW~mG~~GpcGPcsEI~yd~~~~~~~~~~~~~~~~r~lEiwNlVFmq~~~~~~g~l~~Lp~ 287 (1009)
||+++||++||+++|.+||||+||++|||||||||||||++++++.++++.||+|||||||||||||||++||+|+|||+
T Consensus 159 iW~~~~~~~rI~~~~~~dNfW~~G~tGpcGPcsEi~yD~g~~~~~~~~~~~~~~r~lEiwNlVFmq~~~~~~g~~~~Lp~ 238 (936)
T PLN02900 159 IWLDYLPEERVLPFGCKDNFWEMGDTGPCGPCSEIHYDRIGERDAADLVNNDDPRFIEIWNLVFIQFNREADGSLKPLPA 238 (936)
T ss_pred HHHHhCCHHHeecCCcccCCccCCCCcCCCCCeEEEEecCCccCccccCCCCCCCEEEEeeeeeeeeeecCCCceeeCCC
Confidence 99999999999999999999999999999999999999998877776688899999999999999999999999999999
Q ss_pred CcccccccHHHHHHHHcCCCCCccccccHHHHHHHHHHhCCCCCCCCCCCCccccccchhhhhhhhhhhheeeecCCCcc
Q 001826 288 KHVDTGLGFERLTSILQNKMSNYDTDVFMPIFDAIQQATGARPYSGKVGADDADKVDMAYRVVADHIRTLSFAIADGSCP 367 (1009)
Q Consensus 288 ~~IDTGmGlERl~~vlqg~~snydtdlf~pli~~i~~~~~~~~y~g~~~~~~~~~~~~~~rviaDH~R~~~~~i~DGv~P 367 (1009)
||||||||||||+|||||++||||||+|.|||++|++++|+++|+|....++.+..+.||||||||+||++|||+||++|
T Consensus 239 ~~IDTGmGLERl~~vlqg~~snydtDlf~pii~~i~~~~~~~~~~~~~y~~~~~~~~~a~rviaDH~R~~~f~i~DGv~P 318 (936)
T PLN02900 239 KHVDTGMGLERLASILQNKPSNYDTDLFMPIFDAIQEATGARPYAGKVGAEDDDRVDMAYRVVADHIRTLSFAIADGVVP 318 (936)
T ss_pred CeeecCcCHHHHHHHHcCCCCcchhhhHHHHHHHHHHHhCCCccccccccccccccceeeeeehhhHHHHHHHHhcCCcc
Confidence 99999999999999999999999999999999999999998889886543332456789999999999999999999999
Q ss_pred CCCCcchHHHHHHHHHHHHHHhhhCCCcchhhhHHHHHHHHhcccChhhHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001826 368 GNEGREYVLRRILRRAVRYGSEVLKAQDGFFNGLVNIVVKVMGDVFPELKQREAHIREIIAAEEASFGKTLLKGIEKFKK 447 (1009)
Q Consensus 368 sn~grgYvlRrilRRa~r~~~~~lg~~~~fl~~lv~~v~~~~~~~ypel~~~~~~I~~ii~~Ee~~F~~tl~~g~~~l~~ 447 (1009)
||+|||||||||||||+|+|+++||++.|||++||++|++.|++.||||.++++.|++||..||++|.+||++|+++|++
T Consensus 319 sN~grgYvlRrilRRa~r~~~~~lg~~~~fl~~lv~~v~~~~~~~ypel~~~~~~I~~ii~~EE~~F~~tl~~G~~~l~~ 398 (936)
T PLN02900 319 SNEGRGYVLRRLLRRAVRYGRLLLGAEEGFFPALVEVVVELSGDVFPEVKKNEKRITEIIAEEELSFGKTLEKGIEKFKK 398 (936)
T ss_pred CCCCccHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhccCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999644899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhc---CCCCChhhhhhhhccCCCChHHHHHHHHHcCceeChhhHHHHHHHHHHHhHhhhccccCCccccchhHHHH
Q 001826 448 AAQDVQ---GKVLSGQDAFILWDTYGFPLDLTQLMAEERGLLVDIEGFNNAMDEARERSRSAQNKQAGGAIVMDADATAA 524 (1009)
Q Consensus 448 ~~~~~~---~~~l~g~~af~LydtyGfP~dlt~~~a~e~g~~vd~~~f~~~~~~~~~~sr~~~~~~~~~~~~~~~~~~~~ 524 (1009)
++++++ ++.|||++||+||||||||+|||++||+|+|++||+++|+++|++||++||++++.........+...+..
T Consensus 399 ~i~~~~~~~~~~l~g~~af~LydTyGfP~dlt~~ia~e~g~~vD~~~F~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~ 478 (936)
T PLN02900 399 ALAAAKANGGPVLSGKDAFLLYDTYGFPVDLTELMAEERGVTVDMEGFEAAMEEARERSRAAHLKAGGGAIELAAEATSW 478 (936)
T ss_pred HHHHHhhcCCCcCCHHHHHHHHhccCCCHHHHHHHHHHcCCeecHHHHHHHHHHHHHHHHhhhhccccccccccHHHHHH
Confidence 998765 36899999999999999999999999999999999999999999999999876532221111223233344
Q ss_pred HhhcCCCCcccccCccccee-eeEEEEEEEeCCeeeeeecCCCeEEEEecccccccCCCCCCCCeEEEEcccc-cEEEEe
Q 001826 525 LHKRGVLATDDSFKFIWFQD-HKSVIKAIYTGSEFIESVVPGNEVGIVLASSSFYAEQGGQIFDEGFIEGLFG-SFYVRN 602 (1009)
Q Consensus 525 l~~~~~~~T~~~~~Y~y~~~-~~a~Vl~i~~~~~~~~~~~~~~~~~vvLD~T~FYpegGGQ~~D~G~I~~~~~-~~~V~d 602 (1009)
+.+..++++.+|.||++ .+ ++|+|++++.+++.++++..++.+.|+||+|+|||||||||+|+|+|..+++ .++|.+
T Consensus 479 ~~~~~~~~~t~f~gY~~-~~~~~~~v~~i~~~~~~v~~~~~g~~~~vvLd~T~FYpEgGGQp~D~G~I~~~~~~~~~V~d 557 (936)
T PLN02900 479 LQKQGVAATDDFLKYDW-LSDHEAVVKAILTGGGFVESVSEGDEVGIVLDKTSFYAESGGQIGDTGVLEGSGGAVVEVSD 557 (936)
T ss_pred HHhccCCCCCccccccc-CCccceEEEEEEECCceeeeccCCCeEEEEEeCCCCCCCCCCCCCCEEEEecCCCCEEEEEE
Confidence 43332344446999994 45 8999999998888888888888899999999999999999999999987666 799999
Q ss_pred EEEECCEEEEEEEeecccccCCCCCEEEEEEehhhhhhhhhhchHHHHHHHHHHHHhCCccccccccccCCceEEEecCC
Q 001826 603 VQIYGGFVIHIGSLTEGAGRFSVGEEVICKVDYDRRKLIAPNHTCTHMLNFALREVLGDHVDQKGSVVLPEKLRFDFSHG 682 (1009)
Q Consensus 603 v~~~~g~i~H~~~~~~~~~~l~~G~~V~~~ID~~rR~~~m~~HTAtHLL~aAL~~vlg~~v~q~Gs~v~~d~~r~Df~~~ 682 (1009)
|++.+|.++|++.+.. +.+.+|++|.+.|||+||+++|++|||+|||++|++++||.++.|.|++++++++||||+++
T Consensus 558 v~k~~g~i~H~~~~~~--g~l~~G~~V~~~VD~~rR~~~m~~HTAtHLL~aALr~vlG~~v~q~Gs~v~~d~~r~Df~~~ 635 (936)
T PLN02900 558 VQKAGGFVLHIGTVTE--GSVSVGDAVTCKVDYDRRRRIAPNHTATHLLNSALKEVLGDHVDQKGSLVAFEKLRFDFSHG 635 (936)
T ss_pred EEEECCEEEEEEEecc--CCCCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEeccccccCCeEEEEeeCC
Confidence 9999999999987654 67899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHcCCCEEEEEcCHHHHhcccCchhhcCCcCCCCEEEEEecccccccccCCCCCcccce-eE
Q 001826 683 KPVDPEHLRRIESIVNEQIKAELDVFSKEATLAEAKCINGLRAVFGEVYPDPVRVVAIGRKVEDLLADPENKEWLSI-SA 761 (1009)
Q Consensus 683 ~~lt~e~L~~IE~~~NeiI~~n~pV~~~~~~~eEA~~~~g~~~~f~e~y~d~VRVV~Ig~~~~~ll~~~~~~~~~~~-d~ 761 (1009)
+++|++++.+||+.||++|++|+||++.+++++||+++.|++++|+++|++.||||+|+ ++ |.
T Consensus 636 ~~lt~eel~~IE~~vNe~I~~n~pV~~~~~~~eEA~~~~g~~~~f~e~y~~~VRVV~Ig----------------~~~d~ 699 (936)
T PLN02900 636 KPMTPEELREVESLVNEWIGDALPVEAKEMPLADAKRINGLRAVFGEKYPDPVRVVSVG----------------GVYSM 699 (936)
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCCeEEEEcCHHHHhhccChHhhcCCCCCCcEEEEEEC----------------Cccce
Confidence 99999999999999999999999999999999999997799999999999999999998 56 99
Q ss_pred eeccCCCcccccccccEEEeeeccccCCceEEEEEcchhHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHhhhcCCCC
Q 001826 762 ELCGGTHLSNTREAEAFALLSEEGIAKGIRRITAVTTGLAYKAFEAACSLEKEVDDASKIEGSLLEKTVASLKSKVDGAA 841 (1009)
Q Consensus 762 e~CgGTHV~nTgeIg~fkI~~~~~~~~Gv~RI~~vtG~~A~~~~~~~~~~~~~l~~l~~~~~~~i~k~l~~~~~~~~~~~ 841 (1009)
++||||||+|||+||.|+|++++++++|++||+|+||.+|++++++..+.+++++.+++++..++.+++..|...+...+
T Consensus 700 elCGGTHV~nTgeIG~fkIls~~~~~~G~rRIe~v~G~~A~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 779 (936)
T PLN02900 700 ELCGGTHVSNTAEAEAFKLLSEEGIAKGIRRITAVTGGAAVEAINAADSLERELDSALKVEGSDLEKKVASLKSRVDAAV 779 (936)
T ss_pred eCCCCCcCCccccCceEEEEEEeeecCCeEEEEEEEcHHHHHHHHHHHHHHHHHHHHhCCCcccchhhhhhhhhhhcccc
Confidence 99999999999999999999999999999999999999999999999999999999999877888899999999888888
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccEEEEEeccCCCHHHHHHHHHHHHhcc-C
Q 001826 842 IPAPKKADIRAKIALLQNQVRKAQKKVAEENLQKAVKVATETAEAAASNGKPFCISRVEVGLDAAAVREAVLKVIEQK-G 920 (1009)
Q Consensus 842 i~~~~~~~l~~~l~~l~~elk~l~ke~~~l~~~~a~~~a~~l~~~~~~~~~~~iv~~~~~~~d~~~L~~~a~~l~~~~-~ 920 (1009)
+|+.+..++.++++++++++++++|++++++.+++...++.+++++...+..+++..++.+.+++.|+++++.+++.. +
T Consensus 780 ~~~~~~~el~~~v~~l~~e~k~l~k~~~~l~~~la~~~~~~l~~~~~~~~~~~~v~~~~~~~d~~~Lr~la~~l~~~~~~ 859 (936)
T PLN02900 780 IPAAKKEEIRARVSALQKELRAAQKEAAALRAKLAVAKATELASKALSAGKSVLVARLDVGVDAAALKEAAEKVIAKLGD 859 (936)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCeEEEEEecCCCCHHHHHHHHHHHHhhcCC
Confidence 998899999999999999999999999999999999888888776543334666777754579999999999998854 4
Q ss_pred CcEEEEEEeCCCCeEEEEEeeCCCcccccCccHHHHHHHHHhhcCCccCCCCCCCeeeeccCCcc
Q 001826 921 MPVMVFSTDETTNKAVVCAGVPEKSDQSKQLEVSEWLTAALQPLKGRCGKGKGGLASGQVSGFYM 985 (1009)
Q Consensus 921 ~~vvll~~~~~~~k~~~~~~v~~~~~~~~~~~A~~~~k~v~~~lgGkGG~Gk~~~AQG~g~~~~~ 985 (1009)
..+++++....++++.+++++++++ ..++++|++|++++++.+||||| |+|.||||+|++++.
T Consensus 860 ~~vvl~~~~~~~~k~~~~~~~~~~~-~~~~~~A~~lvk~~~~~~gGkGG-G~~~~AQggg~~~~~ 922 (936)
T PLN02900 860 PAAVVLSSDEEKGKVSLVAAVPPGV-VKKGLKAGKWLGAIAKLCGGGGG-GKPGFAQGQGRDAEK 922 (936)
T ss_pred ceEEEEEecCCCCeEEEEEEEChHH-hhcCCCHHHHHHHHHHhcCCCCC-CcHHHeeeCCCCHHH
Confidence 3666665432457888888888876 65679999999999999999999 999999999987763
No 2
>KOG0188 consensus Alanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.9e-247 Score=2083.66 Aligned_cols=880 Identities=55% Similarity=0.896 Sum_probs=812.3
Q ss_pred CChhHHHHHHHHhhhhCCCeeecCCCCccCCCCCcccccccccccccccccccCCCCcccccccccccccccccCCCCCC
Q 001826 58 WPATKVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFANAGMNQYKPIFLGTADPNTQLSKLTRACNTQKCIRAGGKHND 137 (1009)
Q Consensus 58 ~~~~eiR~~fl~fF~~~gH~~v~s~slvp~~dptllftnAGm~qfk~~flg~~~p~~~~~~~~r~~~~QkCiR~gGkhnD 137 (1009)
||++|||++|||||++|.|++|+||||||.+||||||+|||||||||+|||+ +++++||+|+|||||+||||||
T Consensus 2 ~ta~evR~tFldfF~~k~H~~V~SSsViP~dDpTLLFaNAGMNQFKpifLgt------~a~lkRa~NsQKCIRAGGKHND 75 (895)
T KOG0188|consen 2 LTASEVRKTFLDFFKSKHHKIVHSSSVIPFDDPTLLFANAGMNQFKPIFLGT------MAKLKRAANSQKCIRAGGKHND 75 (895)
T ss_pred ccHHHHHHHHHHHHHhcCceEeccCCcccCCCCeeEEeccchhhcchhhhhc------hhhhHhhhhhhhHHhccCCcCC
Confidence 7999999999999999999999999999999999999999999999999998 4568999999999999999999
Q ss_pred CCCCCCCCCcccccccccccccccccHHHHHHHHHHHcccccCCCCCceEEEEECCCCcCCCCCcHHHHHHHHhc-CCCC
Q 001826 138 LDDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWAWELLTKVYRLPADRLYATYFGGDEKAGLAPDNEARDIWLKF-LPAS 216 (1009)
Q Consensus 138 ld~VG~t~rH~TfFEMlGn~SfgdYfK~eai~~awe~lt~~l~i~~~rL~vT~~~~~~~~~~~~D~E~~~iW~~~-~~~~ 216 (1009)
||+||+|.|||||||||||||||||||+|||.|||||||++||||++|||||||+||+++||++|.||++||+++ +|++
T Consensus 76 LdDVGkD~yHhTfFEMlGNWSFGdYfK~Eac~~AwelLt~vygi~~dRLYVtYF~Gde~~Gl~~D~E~r~iW~~~Gvp~s 155 (895)
T KOG0188|consen 76 LDDVGKDFYHHTFFEMLGNWSFGDYFKEEACAWAWELLTFVYGIPTDRLYVTYFGGDEKLGLEPDLECREIWNELGVPDS 155 (895)
T ss_pred hhHhchhccccCchhhcCCCCcchHHHHHHHHHHHHHHHHhhcCCCceEEEEEecCccccCCCCCcHHHHHHHHcCCChh
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999 9999
Q ss_pred CcccCCCCCCcccCCCCCCCcCceeEEeecCCCCCCCCCCCCCCCceEEEeeecccccccCCCCccccCCCCcccccccH
Q 001826 217 RVLPFGCKDNFWEMGDTGPCGPCSEIHYDRTGNRDAASLVNNDDPTCIEIWNIVFIQFNRESDGSLKPLPAKHVDTGLGF 296 (1009)
Q Consensus 217 ~i~~~~~~dNfW~mG~~GpcGPcsEI~yd~~~~~~~~~~~~~~~~r~lEiwNlVFmq~~~~~~g~l~~Lp~~~IDTGmGl 296 (1009)
||++||.+|||||||++|||||||||||||+||++++.+||.|+|+++||||||||||||++||+|.|||+|||||||||
T Consensus 156 rILp~~~kDNFWEMGdtGPCGPCtEIHyDriG~r~a~~LVN~ddp~v~EiWNlVFiq~NRe~dGsL~pLp~khIDTGMGf 235 (895)
T KOG0188|consen 156 RILPFGMKDNFWEMGDTGPCGPCTEIHYDRIGGRDAVKLVNHDDPDVLEIWNIVFIQYNREADGSLKPLPKKHIDTGMGF 235 (895)
T ss_pred hccCCccccchhhhcCCCCCCcchhhhhhhhcCcchHHHhcCCCcCceeeeeeeeeeeccccCCccccCcccccccccCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCCCccccccHHHHHHHHHHhCCCCCCCCCCCCccccccchhhhhhhhhhhheeeecCCCccCCCCcchHH
Q 001826 297 ERLTSILQNKMSNYDTDVFMPIFDAIQQATGARPYSGKVGADDADKVDMAYRVVADHIRTLSFAIADGSCPGNEGREYVL 376 (1009)
Q Consensus 297 ERl~~vlqg~~snydtdlf~pli~~i~~~~~~~~y~g~~~~~~~~~~~~~~rviaDH~R~~~~~i~DGv~Psn~grgYvl 376 (1009)
|||++|||+|.||||||+|+|||++|++.++.+ |+| ++.+.+|+||||+|||+||+++|||||.+|+|+||||||
T Consensus 236 ERLvsVlQnk~SNYDTDlFtPif~aiq~~~~~~-YtG----~d~d~~D~AyRVvADH~RtlTvalsDG~~Pdn~GrgyvL 310 (895)
T KOG0188|consen 236 ERLVSVLQNKTSNYDTDLFTPIFEAIQEGTGAR-YTG----EDADGIDTAYRVVADHARTLTVALSDGGVPDNTGRGYVL 310 (895)
T ss_pred HHHHHHHhcccccccchhhHHHHHHHHHhcCCC-ccC----CccccchhhHHHHHHHhhhhheeeecCCCCCCCCChhHH
Confidence 999999999999999999999999999999997 998 466889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhCCCcchhhhHHHHHHHHhcccChhhHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CC
Q 001826 377 RRILRRAVRYGSEVLKAQDGFFNGLVNIVVKVMGDVFPELKQREAHIREIIAAEEASFGKTLLKGIEKFKKAAQDVQ-GK 455 (1009)
Q Consensus 377 RrilRRa~r~~~~~lg~~~~fl~~lv~~v~~~~~~~ypel~~~~~~I~~ii~~Ee~~F~~tl~~g~~~l~~~~~~~~-~~ 455 (1009)
|||||||+||++++||++++||.+|||+|++.||++||||+.++..|.+||.+||+.|++||++|.++|++.++.+. ++
T Consensus 311 RRILRRavrya~e~l~~~~g~~~~LVpvvv~~lgd~fPEl~~~~~~v~diineEE~~F~ktl~rg~~~f~r~~~~~~~s~ 390 (895)
T KOG0188|consen 311 RRILRRAVRYAHEKLNAPPGFFSTLVPVVVETLGDAFPELKRDPQHVIDIINEEEAQFLKTLDRGRKLFDRVARELGSSK 390 (895)
T ss_pred HHHHHHHHHHHHHHhCCCcchhhhhhHHHHHHHhhhchhhhcCHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999887 58
Q ss_pred CCChhhhhhhhccCCCChHHHHHHHHHcCceeChhhHHHHHHHHHHHhHhhhccccCCccccchhHHHHHhhcCCCCccc
Q 001826 456 VLSGQDAFILWDTYGFPLDLTQLMAEERGLLVDIEGFNNAMDEARERSRSAQNKQAGGAIVMDADATAALHKRGVLATDD 535 (1009)
Q Consensus 456 ~l~g~~af~LydtyGfP~dlt~~~a~e~g~~vd~~~f~~~~~~~~~~sr~~~~~~~~~~~~~~~~~~~~l~~~~~~~T~~ 535 (1009)
.|||+++|+||||||||+|||++||+|+|++||+++|+++.++.+++|+++.+.+.+ +.+++ +.+| +|||+|
T Consensus 391 tipGd~~w~LydTyGfPvdlt~lmAee~gl~iD~~~fE~ar~~A~~~Sk~~~~~~~~--i~ldv--l~el----~p~TdD 462 (895)
T KOG0188|consen 391 TIPGDVAWRLYDTYGFPVDLTELMAEEKGLKIDETGFEAARQEAQEKSKGAGGGKLS--IDLDV--LSEL----VPPTDD 462 (895)
T ss_pred cCchHHHHHHHhhcCCcHHHHHHHHHHhCCccCchhHHHHHHHHHHHHhccCCCCCc--ccHHH--HHhh----CCCCCC
Confidence 999999999999999999999999999999999999999999999999876443322 44443 3444 799999
Q ss_pred ccCcccceeeeEEEEEEEeCCeeeeeecCCCeEEEEecccccccCCCCCCCCeEEEEcccc---cEEEEeEEEECCEEEE
Q 001826 536 SFKFIWFQDHKSVIKAIYTGSEFIESVVPGNEVGIVLASSSFYAEQGGQIFDEGFIEGLFG---SFYVRNVQIYGGFVIH 612 (1009)
Q Consensus 536 ~~~Y~y~~~~~a~Vl~i~~~~~~~~~~~~~~~~~vvLD~T~FYpegGGQ~~D~G~I~~~~~---~~~V~dv~~~~g~i~H 612 (1009)
++||+-...++++|++++.++.+++++..+++++||||+|+||+|+|||.+|+|.|...+. .+.|..++. +|+|+|
T Consensus 463 s~KY~~~~~~~~~il~l~~e~~~v~~~~~g~~~givldktnFYaEqGGQ~~D~G~lv~~~~~~~~fnV~~~~~-gg~vvh 541 (895)
T KOG0188|consen 463 SFKYNEFGVCKTRILALYREDQFVESIPKGQECGIVLDKTNFYAEQGGQIYDTGKLVIDGDEDFVFNVKRVQV-GGYVVH 541 (895)
T ss_pred ccccccCccchhhhhhhhcCCceeeecCCCceEEEEeecceeehhcCCcccccceEEEecCccceeehhhccc-CCEEEE
Confidence 9999535689999999999999999999999999999999999999999999999986543 355666666 899999
Q ss_pred EEEeecccccCCCCCEEEEEEehhhhhhhhhhchHHHHHHHHHHHHhCCccccccccccCCceEEEecCCCCCCHHHHHH
Q 001826 613 IGSLTEGAGRFSVGEEVICKVDYDRRKLIAPNHTCTHMLNFALREVLGDHVDQKGSVVLPEKLRFDFSHGKPVDPEHLRR 692 (1009)
Q Consensus 613 ~~~~~~~~~~l~~G~~V~~~ID~~rR~~~m~~HTAtHLL~aAL~~vlg~~v~q~Gs~v~~d~~r~Df~~~~~lt~e~L~~ 692 (1009)
++.. + +.+++|++|.+.+|.+||+.+|++|||||||++|||+++ ..+.|+||++.||++||||++..++|.|+|++
T Consensus 542 ~g~l-~--~~l~vgdqv~~~~De~rR~~im~nHTaTHlLN~aLr~~l-~~t~QkGSlV~pdklRfDf~~k~~lt~eql~~ 617 (895)
T KOG0188|consen 542 IGVL-E--GDLSVGDQVELHVDEERRQLIMRNHTATHLLNFALRQVL-KGTDQKGSLVAPDKLRFDFSTKGALTKEQLKK 617 (895)
T ss_pred Eeee-c--cccccchhHHHHhhHHHHHHHhhcchHHHHHHHHHHHhc-ccccccccccChhHeeeecccCCCCCHHHHHH
Confidence 9986 3 789999999999999999999999999999999999999 56789999999999999999988999999999
Q ss_pred HHHHHHHHHHcCCCEEEEEcCHHHHhcccCchhhcCCcCCCCEEEEEecccccccccCCCCCcccceeEeeccCCCcccc
Q 001826 693 IESIVNEQIKAELDVFSKEATLAEAKCINGLRAVFGEVYPDPVRVVAIGRKVEDLLADPENKEWLSISAELCGGTHLSNT 772 (1009)
Q Consensus 693 IE~~~NeiI~~n~pV~~~~~~~eEA~~~~g~~~~f~e~y~d~VRVV~Ig~~~~~ll~~~~~~~~~~~d~e~CgGTHV~nT 772 (1009)
+|..+|++|.++.+|..+++++++|++++|+|+.|+|.||++||||++|. +..+++|+|||||+.||
T Consensus 618 vE~~~ne~I~~~~~V~~~e~~l~~ak~i~glr~v~~E~YPdpVRVVsvg~-------------~~~~svE~CgGTH~~~t 684 (895)
T KOG0188|consen 618 VEDKINEFIQKNAPVYAKELPLAEAKKIPGLRAVFDEVYPDPVRVVSVGA-------------GQLTSVEFCGGTHLTNT 684 (895)
T ss_pred HHHHHHHHHhcCCceEEEecCHHHHhcCCCcccccCCccCCceEEEEecc-------------ccccceeecCCcccccc
Confidence 99999999999999999999999999999999999999999999999983 34689999999999999
Q ss_pred cccccEEEeeeccccCCceEEEEEcchhHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHhhhcCCCCcCCCCHHHHHH
Q 001826 773 REAEAFALLSEEGIAKGIRRITAVTTGLAYKAFEAACSLEKEVDDASKIEGSLLEKTVASLKSKVDGAAIPAPKKADIRA 852 (1009)
Q Consensus 773 geIg~fkI~~~~~~~~Gv~RI~~vtG~~A~~~~~~~~~~~~~l~~l~~~~~~~i~k~l~~~~~~~~~~~i~~~~~~~l~~ 852 (1009)
|+||.|.|++++++++|+|||.+|||++|.+..+..+. ..+.+.+.+ ..+.|++..+.+.+..+.+|++.+.++++
T Consensus 685 ~~i~~fvI~se~~iakgirRivavTG~eA~~a~~~a~~---~~~~~~~~~-~~~~kei~~l~~~~~~a~iP~~~k~~~~~ 760 (895)
T KOG0188|consen 685 SHIGDFVIVSEEGIAKGIRRIVAVTGKEAQEALRLAED---LDKDLRKTD-KALEKEIQELGENLDHAVIPYWQKDEIRE 760 (895)
T ss_pred cccceEEEechhhhhhceeEEEEeccHHHHHHHHHHHH---HHhhhcccc-hhhHHHHHHHHHhhccccchHHhHHHHHH
Confidence 99999999999999999999999999999988776653 222222333 66788888888888888899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccEEEEEeccCCCHHHHHHHHHHHHh-ccCCcEEEEEEeCC
Q 001826 853 KIALLQNQVRKAQKKVAEENLQKAVKVATETAEAAASNGKPFCISRVEVGLDAAAVREAVLKVIE-QKGMPVMVFSTDET 931 (1009)
Q Consensus 853 ~l~~l~~elk~l~ke~~~l~~~~a~~~a~~l~~~~~~~~~~~iv~~~~~~~d~~~L~~~a~~l~~-~~~~~vvll~~~~~ 931 (1009)
+++++++.++++.|..++..++.....++++.++ ..+.+++|..++.. ..+++ .|+.++++++ +++
T Consensus 761 ~~k~~~K~~~d~~ra~~~~~qk~~l~~~~~~~~~--~~~~~~~v~~~~~~----------~~~k~~~~~~~i~lls-d~~ 827 (895)
T KOG0188|consen 761 LLKKLQKRMDDLSRALKAAVQKEVLEEAKQLKES--NPNQPLLVHYIESS----------KLLKKQAPDKSIMLLS-DDE 827 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--CCCCCEEEEEecch----------HHHHhcCCCCeeEEec-cCC
Confidence 9999999999999988887777777777777653 46778888888632 33445 5888999998 666
Q ss_pred CCeEEEEEeeCCCcccccCccHHHHHHHHHhhcCCccCCCCCCCeeeeccCCcccccccchhhhhHH
Q 001826 932 TNKAVVCAGVPEKSDQSKQLEVSEWLTAALQPLKGRCGKGKGGLASGQVSGFYMGYKYKLPKSCILC 998 (1009)
Q Consensus 932 ~~k~~~~~~v~~~~~~~~~~~A~~~~k~v~~~lgGkGG~Gk~~~AQG~g~~~~~~~~~~l~~~~~~~ 998 (1009)
.+|+.|.|.|++.+ ..++++|.+|++.++..+||||| ||+..|||.|.++. .|..++-++
T Consensus 828 ~gkv~~~c~V~~~a-~~~gl~a~~w~q~v~~~~ggk~g-gK~~~~q~~g~~~~-----~l~~av~~a 887 (895)
T KOG0188|consen 828 SGKVTCLCQVPQNA-ANKGLKASEWVQSVSGTMGGKGG-GKGVLAQATGNNVG-----CLDEAVSLA 887 (895)
T ss_pred CCeEEEEEeecHHH-hhccCCHHHHHHHHHHhhCCccC-CccchhhhhCCcHH-----HHHHHHHHH
Confidence 78999999999998 88899999999999999999999 99999999998666 455555443
No 3
>COG0013 AlaS Alanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=8.5e-241 Score=2124.68 Aligned_cols=855 Identities=43% Similarity=0.736 Sum_probs=773.2
Q ss_pred CCCChhHHHHHHHHhhhhCCCeeecCCCCccCCCCCcccccccccccccccccccCCCCcccccccccccccccccCCCC
Q 001826 56 VEWPATKVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFANAGMNQYKPIFLGTADPNTQLSKLTRACNTQKCIRAGGKH 135 (1009)
Q Consensus 56 ~~~~~~eiR~~fl~fF~~~gH~~v~s~slvp~~dptllftnAGm~qfk~~flg~~~p~~~~~~~~r~~~~QkCiR~gGkh 135 (1009)
.+||++|||++||+||++|||+++|||||||+||||||||||||+||||||+|.++||+ .|+||||||||+
T Consensus 4 ~~~t~~EiR~~FL~FF~~kgH~~v~s~slVP~nDptLLftnAGm~~FK~~f~g~v~p~~-----~r~~~sQkcIR~---- 74 (879)
T COG0013 4 MKLTTNEIRQKFLDFFEKKGHTVVPSSPLVPRNDPTLLFTNAGMVQFKPYFTGGVTPPA-----NRAVTSQKCIRT---- 74 (879)
T ss_pred ccCCHHHHHHHHHHHHHHCCCeecCCCCcCCCCCCCeEEeecccccchhhhcCCCCCCC-----CCeecccccccc----
Confidence 45999999999999999999999999999999999999999999999999999977765 399999999999
Q ss_pred CCCCCCCCCCCcccccccccccccccccHHHHHHHHHHHcccccCCCCCceEEEEECCCCcCCCCCcHHHHHHHHhc--C
Q 001826 136 NDLDDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWAWELLTKVYRLPADRLYATYFGGDEKAGLAPDNEARDIWLKF--L 213 (1009)
Q Consensus 136 nDld~VG~t~rH~TfFEMlGn~SfgdYfK~eai~~awe~lt~~l~i~~~rL~vT~~~~~~~~~~~~D~E~~~iW~~~--~ 213 (1009)
|||||||+|+|||||||||||||||||||+|||.|||||||++|||||||||||||+ .|+||+++|+++ +
T Consensus 75 NDieNVG~T~RHhTfFEMLGNfSFGdYFKeeAI~~AwEflT~~lgl~~ekL~vtvy~--------~Ddea~~~W~~~~gi 146 (879)
T COG0013 75 NDIDNVGYTARHHTFFEMLGNFSFGDYFKEEAIEFAWEFLTKVLGLPKEKLYVTVYE--------DDDEAYNEWEKIIGI 146 (879)
T ss_pred CchhhcCccccchhHHHhhhcCchhHHHHHHHHHHHHHHHHhhcCCCHHHEEEEEec--------CchHHHHHHHhhcCC
Confidence 899999999999999999999999999999999999999999999999999999997 599999999998 9
Q ss_pred CCCCcccCCCCCCcccCCCCCCCcCceeEEeecCCCCC--CCCCCCCCCCceEEEeeecccccccC-CCCccccCCCCcc
Q 001826 214 PASRVLPFGCKDNFWEMGDTGPCGPCSEIHYDRTGNRD--AASLVNNDDPTCIEIWNIVFIQFNRE-SDGSLKPLPAKHV 290 (1009)
Q Consensus 214 ~~~~i~~~~~~dNfW~mG~~GpcGPcsEI~yd~~~~~~--~~~~~~~~~~r~lEiwNlVFmq~~~~-~~g~l~~Lp~~~I 290 (1009)
|++||+|+|.+||||+||+ ||||||||||||||+..+ ....++.|+||||||||||||||||+ .+|+|.|||+|||
T Consensus 147 p~~rIir~~~~dNfW~~G~-GPcGPcsEI~yD~G~~~~~~~~~~~~~d~dR~lEiwNLVFmQfnr~~~~g~~~~Lp~k~I 225 (879)
T COG0013 147 PPERIIRIGASDNFWEMGD-GPCGPCSEIFYDRGEEIGGGPPGSPDEDGDRYLEIWNLVFMQYNRDPGDGNYTPLPKKNI 225 (879)
T ss_pred CHHHeeecCcCCCCCCCCC-cCCCCceEEEEcCCcccCCCCCCCcCCCCCceEEEeeeeehhhccCCCCCCcccCCCCCc
Confidence 9999999999999999999 999999999999986433 33567899999999999999999999 6999999999999
Q ss_pred cccccHHHHHHHHcCCCCCccccccHHHHHHHHHHhCCCCCCCCCCCCccccccchhhhhhhhhhhheeeecCCCccCCC
Q 001826 291 DTGLGFERLTSILQNKMSNYDTDVFMPIFDAIQQATGARPYSGKVGADDADKVDMAYRVVADHIRTLSFAIADGSCPGNE 370 (1009)
Q Consensus 291 DTGmGlERl~~vlqg~~snydtdlf~pli~~i~~~~~~~~y~g~~~~~~~~~~~~~~rviaDH~R~~~~~i~DGv~Psn~ 370 (1009)
|||||||||+|||||+|||||||+|.|||+.+++++|. .|. .+.+.++.++||||||+||++|||+|||+|||+
T Consensus 226 DTGmGLERi~~vlQ~~~tnyd~dlf~~ii~~~e~~~g~-~~~-----~~~~~~~~s~rVIADH~Rs~~f~iaDGv~PSNe 299 (879)
T COG0013 226 DTGMGLERIAAVLQGVPTNYDTDLFRPIIKAIEKLTGK-KYG-----EDEEDPDVSFRVIADHIRSLAFMIADGVLPSNE 299 (879)
T ss_pred ccCccHHHHHHHHcCCCcchhhhhhHHHHHHHHHHhCC-cCC-----ccccccceeEEEehhHHHHHHHHHhCCCCcCCC
Confidence 99999999999999999999999999999999999986 353 223334789999999999999999999999999
Q ss_pred CcchHHHHHHHHHHHHHHhhhCCCcchhhhHHHHHHHHhcccChhhHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001826 371 GREYVLRRILRRAVRYGSEVLKAQDGFFNGLVNIVVKVMGDVFPELKQREAHIREIIAAEEASFGKTLLKGIEKFKKAAQ 450 (1009)
Q Consensus 371 grgYvlRrilRRa~r~~~~~lg~~~~fl~~lv~~v~~~~~~~ypel~~~~~~I~~ii~~Ee~~F~~tl~~g~~~l~~~~~ 450 (1009)
|||||||||||||+||+ +.||++.|||++|||++++.|+++||||.++++.|+++|+.||++|.+||++|+++|+++++
T Consensus 300 grGYvlRriiRRa~R~~-~~LG~~~~fl~~LV~~~~~~m~~~ypel~~~~~~I~~vl~~EEe~F~~TL~~G~~l~~~~~~ 378 (879)
T COG0013 300 GRGYVLRRIIRRALRHG-KLLGIKEPFLYKLVDTVIDEMGDAYPELKEKEDFIKEVLKLEEERFAKTLERGLKLLEKELA 378 (879)
T ss_pred CccHHHHHHHHHHHHHH-HHhCCCchHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999 57999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcC-CCCChhhhhhhhccCCCChHHHHHHHHHcCceeChhhHHHHHHHHHHHhHhhhccccCCccccchhHHHHHhhcC
Q 001826 451 DVQG-KVLSGQDAFILWDTYGFPLDLTQLMAEERGLLVDIEGFNNAMDEARERSRSAQNKQAGGAIVMDADATAALHKRG 529 (1009)
Q Consensus 451 ~~~~-~~l~g~~af~LydtyGfP~dlt~~~a~e~g~~vd~~~f~~~~~~~~~~sr~~~~~~~~~~~~~~~~~~~~l~~~~ 529 (1009)
+.++ +.|||++||+||||||||+|||++||+|+|++||+++|+.+|++||++||+++ .+.. .........+.. .
T Consensus 379 ~~~~~~~l~ge~afkLYDTyGfP~eLt~eia~e~g~~VD~~~f~~~m~~qr~~ar~~~-~~~~---~~~~~~~~~~~~-~ 453 (879)
T COG0013 379 KLKKSKTLDGEDAFKLYDTYGFPVELTEEIAEERGLKVDEPGFEYAMEAQRERARASA-GSGE---GAKESEDLELID-K 453 (879)
T ss_pred hhccCCccChHHheeehhcCCCCHHHHHHHHHHcCCeeccccHHHHHHHHHHHhhhcc-cccc---ccchhhhhhhhc-c
Confidence 8764 78999999999999999999999999999999999999999999999999754 1111 001111111211 2
Q ss_pred CCCcccccCcccceeeeEEEEEEEeCCeeeeeecCCCeEEEEecccccccCCCCCCCCeEEEEccc-ccEEEEeEEEEC-
Q 001826 530 VLATDDSFKFIWFQDHKSVIKAIYTGSEFIESVVPGNEVGIVLASSSFYAEQGGQIFDEGFIEGLF-GSFYVRNVQIYG- 607 (1009)
Q Consensus 530 ~~~T~~~~~Y~y~~~~~a~Vl~i~~~~~~~~~~~~~~~~~vvLD~T~FYpegGGQ~~D~G~I~~~~-~~~~V~dv~~~~- 607 (1009)
.++| +|.+|+ ..+.+++|+.++.++..++++.+++.++||||+||||||||||++|+|+|..++ ..+.|.||||.+
T Consensus 454 ~~~t-ef~gY~-~~~~~~~i~~l~~~~~~v~~~~~g~~~~vVld~TpFYaEsGGQ~~D~G~i~~~~~~~~~V~dvqK~~~ 531 (879)
T COG0013 454 LPET-EFLGYD-DLEMEFKVLVLFVDGKEVSELNEGQEVYVVLDQTPFYAESGGQVGDTGYIFGDGGGRFEVTDVQKVGN 531 (879)
T ss_pred CCCc-eeeecc-cccceEEEEEEEecCcccccccCCceEEEEEecCCccCCCCCccCceEEEEecCCcEEEEEEEEEcCC
Confidence 3556 499999 788889999999887658888899999999999999999999999999998874 789999999997
Q ss_pred CEEEEEEEeecccccCCCCCEEEEEEehhhhhhhhhhchHHHHHHHHHHHHhCCccccccccccCCceEEEecCCCCCCH
Q 001826 608 GFVIHIGSLTEGAGRFSVGEEVICKVDYDRRKLIAPNHTCTHMLNFALREVLGDHVDQKGSVVLPEKLRFDFSHGKPVDP 687 (1009)
Q Consensus 608 g~i~H~~~~~~~~~~l~~G~~V~~~ID~~rR~~~m~~HTAtHLL~aAL~~vlg~~v~q~Gs~v~~d~~r~Df~~~~~lt~ 687 (1009)
+.++|.+.+.. |.+++|+.|.+.|||+||+.+|+||||||||++|||+++|.|++|+||.++++++||||+|++++|.
T Consensus 532 ~~~vH~~~~~~--G~l~~gd~V~~~vD~~rR~~~~~nHTATHLLh~ALr~VLG~hV~QaGSlv~~~~lRfDfsH~~~it~ 609 (879)
T COG0013 532 GVIVHKGKVES--GELKVGDEVTAEVDEERRRRLMRNHTATHLLHAALRKVLGDHVWQAGSLVDPEKLRFDFSHYKALTA 609 (879)
T ss_pred ceEEEEEeecc--CccCCCCEEEEEECHHHHHHHHhhChHHHHHHHHHHHHhCccceecCcccCCCeeEEeecCCCCCCH
Confidence 89999999776 8999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHcCCCEEEEEcCHHHHhcccCchhhcCCcCCCCEEEEEecccccccccCCCCCcccceeEeeccCC
Q 001826 688 EHLRRIESIVNEQIKAELDVFSKEATLAEAKCINGLRAVFGEVYPDPVRVVAIGRKVEDLLADPENKEWLSISAELCGGT 767 (1009)
Q Consensus 688 e~L~~IE~~~NeiI~~n~pV~~~~~~~eEA~~~~g~~~~f~e~y~d~VRVV~Ig~~~~~ll~~~~~~~~~~~d~e~CgGT 767 (1009)
|+|++||+.+|++|++|.||.+.+|++++|++. |++++|+++|++.||||+|| +||+|+||||
T Consensus 610 Eel~~IE~~vNe~I~~n~~V~~~~m~~~eAk~~-Ga~alfGekY~~~VRVV~ig----------------~~SvElCGGT 672 (879)
T COG0013 610 EELKEIERLVNEIIRENLPVKTEEMDLDEAKAK-GAMALFGEKYGDEVRVVEIG----------------DFSVELCGGT 672 (879)
T ss_pred HHHHHHHHHHHHHHHcCCceeEEEccHHHHHHh-ChHhhcCCcCCCeEEEEEEC----------------CceeeccCCc
Confidence 999999999999999999999999999999998 99999999999999999999 5899999999
Q ss_pred CcccccccccEEEeeeccccCCceEEEEEcchhHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHhhhcCCCCcCCCCH
Q 001826 768 HLSNTREAEAFALLSEEGIAKGIRRITAVTTGLAYKAFEAACSLEKEVDDASKIEGSLLEKTVASLKSKVDGAAIPAPKK 847 (1009)
Q Consensus 768 HV~nTgeIg~fkI~~~~~~~~Gv~RI~~vtG~~A~~~~~~~~~~~~~l~~l~~~~~~~i~k~l~~~~~~~~~~~i~~~~~ 847 (1009)
||.|||+||.|||+++++++.|++||+|+||..|+++.+...+.+++++.+++.+
T Consensus 673 Hv~~Tg~IG~fkI~~e~~i~aGVrRIeavtG~~a~~~~~~~~~~l~~~a~~lk~~------------------------- 727 (879)
T COG0013 673 HVSNTGDIGLFKIISEEGIAAGVRRIEAVTGEAALEYLQEQEDLLKEIASLLKVP------------------------- 727 (879)
T ss_pred ccCCccceeeEEEEEecccccCeEEEEEEcCHHHHHHHHHHHHHHHHHHHHhCCC-------------------------
Confidence 9999999999999999999999999999999999999998888888777766641
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hcCCccEEEEEeccCCCHHHHHHHHHHHHhccCCcEE
Q 001826 848 ADIRAKIALLQNQVRKAQKKVAEENLQKAVKVATETAEAA---ASNGKPFCISRVEVGLDAAAVREAVLKVIEQKGMPVM 924 (1009)
Q Consensus 848 ~~l~~~l~~l~~elk~l~ke~~~l~~~~a~~~a~~l~~~~---~~~~~~~iv~~~~~~~d~~~L~~~a~~l~~~~~~~vv 924 (1009)
.++..+++.++.+.++++|++.+++.+++......+.... +..|.++++..++ +.|++.|+.+++.++++.+..++
T Consensus 728 ~~~~~kv~~l~~~~k~lekel~~lk~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~-~~d~~~Lr~~a~~lk~k~~~~vi 806 (879)
T COG0013 728 PELLPKVERLLEELKELEKELERLKKKLAAAELADLLSNAKAEEIGGVKVLAKEVD-GADMKELREIADDLKKKLGSAVI 806 (879)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccceeeCCEEEEEEEec-CCCHHHHHHHHHHHHhhcCCcEE
Confidence 2445588999999999999999998877776655544432 2567888888886 57999999999999995455555
Q ss_pred EEEEeCCCCeEEEEEeeCCCcccccCccHHHHHHHHHhhcCCccCCCCCCCeeeeccCCcccccccchhhhh
Q 001826 925 VFSTDETTNKAVVCAGVPEKSDQSKQLEVSEWLTAALQPLKGRCGKGKGGLASGQVSGFYMGYKYKLPKSCI 996 (1009)
Q Consensus 925 ll~~~~~~~k~~~~~~v~~~~~~~~~~~A~~~~k~v~~~lgGkGG~Gk~~~AQG~g~~~~~~~~~~l~~~~~ 996 (1009)
++.+.. ++|+.++|++++++ .. +++|++|+++++..+||||| |||+||||||+++.. |++++.
T Consensus 807 vl~~~~-~~Kv~~~~~v~~~~-~~-~~~a~~lvk~la~~~gG~GG-Gr~d~Aqggg~d~~~-----~~~al~ 869 (879)
T COG0013 807 VLASVA-DGKVSLVVAVSKDL-TD-KVKAGELVKELAAIVGGKGG-GRPDMAQGGGKDPEK-----LDEALE 869 (879)
T ss_pred EEEEec-CCeEEEEEEechhh-hc-ccCHHHHHHHHHHhcCCCCC-CchhhheeCCCCccc-----HHHHHH
Confidence 555433 34899999998665 44 49999999999999999999 999999999998884 555553
No 4
>TIGR00344 alaS alanine--tRNA ligase. The model describes alanine--tRNA ligase. This enzyme catalyzes the reaction (tRNAala + L-alanine + ATP = L-alanyl-tRNAala + pyrophosphate + AMP).
Probab=100.00 E-value=3.1e-231 Score=2096.99 Aligned_cols=844 Identities=42% Similarity=0.709 Sum_probs=764.0
Q ss_pred HHHHHHHHhhhhCCCeeecCCCCccCCCCCcccccccccccccccccccCCCCcccccccccccccccccCCCCCCCCCC
Q 001826 62 KVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFANAGMNQYKPIFLGTADPNTQLSKLTRACNTQKCIRAGGKHNDLDDV 141 (1009)
Q Consensus 62 eiR~~fl~fF~~~gH~~v~s~slvp~~dptllftnAGm~qfk~~flg~~~p~~~~~~~~r~~~~QkCiR~gGkhnDld~V 141 (1009)
|||++||+||++|||+++|||||||+|||||||||||||||||||+|+++|| ++|+||||||||+ ||||||
T Consensus 1 eiR~~fl~fF~~~gH~~v~s~slvp~~dptllf~nAGm~~fk~~f~G~~~p~-----~~r~~~~QkCiR~----nDld~V 71 (851)
T TIGR00344 1 EIRQTFLDFFKEKGHQVIPSASLVPRNDPTLLLTNAGMAQFKPIFTGIVKPP-----SNRLVNAQPCIRL----NDIENV 71 (851)
T ss_pred CHHHHHHHHHHhCCCEEcCCCCcCCCCCCCeeeeccchhhhhHHhcCCCCCC-----CCCcccccccccc----cchhhh
Confidence 6999999999999999999999999999999999999999999999999987 4799999999999 899999
Q ss_pred CCCCCcccccccccccccccccHHHHHHHHHHHcccccCCCCCceEEEEECCCCcCCCCCcHHHHHHHHhc-CCCCCccc
Q 001826 142 GKDTYHHTFFEMLGNWSFGDYFKNEAIEWAWELLTKVYRLPADRLYATYFGGDEKAGLAPDNEARDIWLKF-LPASRVLP 220 (1009)
Q Consensus 142 G~t~rH~TfFEMlGn~SfgdYfK~eai~~awe~lt~~l~i~~~rL~vT~~~~~~~~~~~~D~E~~~iW~~~-~~~~~i~~ 220 (1009)
|+|+|||||||||||||||||||+|||+|||||||++|||||+|||||||+ .|+||++||+++ +|++||++
T Consensus 72 G~t~rHhTfFEMlGnfSFgdYfK~eai~~awe~lT~~~~i~~~rl~vTv~~--------~D~ea~~iW~~~g~~~~~i~~ 143 (851)
T TIGR00344 72 GRTARHHTFFEMLGNFSFGDYFKEEAIAFAWELLTSVLGLDKERLYVTVYE--------DDEEAYEIWEKHGIPAERIIR 143 (851)
T ss_pred cCCCcchhhHHhhcccchhhhhHHHHHHHHHHHHhhhcCCChHHEEEEEcC--------CCHHHHHHHHhcCCCHHHccc
Confidence 999999999999999999999999999999999999999999999999997 489999999999 99999999
Q ss_pred CCCCCCcccCCCCCCCcCceeEEeecCC---CCCCCCCCCCCCCceEEEeeecccccccCCCCccccCCCCcccccccHH
Q 001826 221 FGCKDNFWEMGDTGPCGPCSEIHYDRTG---NRDAASLVNNDDPTCIEIWNIVFIQFNRESDGSLKPLPAKHVDTGLGFE 297 (1009)
Q Consensus 221 ~~~~dNfW~mG~~GpcGPcsEI~yd~~~---~~~~~~~~~~~~~r~lEiwNlVFmq~~~~~~g~l~~Lp~~~IDTGmGlE 297 (1009)
+|.+||||+||+ |||||||||||||++ |+.+++++|.||||||||||||||||||++||+|+|||+||||||||||
T Consensus 144 ~~~~dNfW~~G~-GpcGPcsEi~yD~g~~~~~~~~~~~~~~~~~r~lEiwNlVFmq~~~~~~g~~~~Lp~~~IDTGmGLE 222 (851)
T TIGR00344 144 CGDKDNFWDMGD-GPCGPCTEIYYDRGEFVGGKPGEPEFFEENDRYVEVWNLVFMQFNRDPDGNYTPLPKKNIDTGMGLE 222 (851)
T ss_pred CCccCCcCCCCC-cCCccCeEEEEecCcccCCCCCcccccCCCCcEEEEeeeeeEeeeecCCCceeeCCCCeeecCcCHH
Confidence 999999999999 999999999999864 3445677888999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCCCccccccHHHHHHHHHHhCCCCCCCCCCCCcccc--ccchhhhhhhhhhhheeeecCCCccCCCCcchH
Q 001826 298 RLTSILQNKMSNYDTDVFMPIFDAIQQATGARPYSGKVGADDADK--VDMAYRVVADHIRTLSFAIADGSCPGNEGREYV 375 (1009)
Q Consensus 298 Rl~~vlqg~~snydtdlf~pli~~i~~~~~~~~y~g~~~~~~~~~--~~~~~rviaDH~R~~~~~i~DGv~Psn~grgYv 375 (1009)
||+|||||++||||||+|.|||++|++++|+++|.+..+..+.+. .+.||||||||+||++|||+||++|||+|||||
T Consensus 223 Rl~~vlqg~~snydtD~f~~ii~~i~~~~g~~y~~~~~~~~d~~~~~~~~~~rviaDH~R~~~f~i~DGv~PsN~grgYv 302 (851)
T TIGR00344 223 RFVAVLQGVPTNYDTDIFLPLIEKIEEITGVKYDSNNAGIMDEKRVEDLRSLRVIADHTRALAFMLADGVVPSNEGRGYV 302 (851)
T ss_pred HHHHHHcCCCCcchhhhHHHHHHHHHHHhCCCCCcCccccccccccccchheeeehhhhhhhhhhhccCcccCCCCCchh
Confidence 999999999999999999999999999999865544433333232 246999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhCCCcchhhhHHHHHHHHhcccChhhHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 001826 376 LRRILRRAVRYGSEVLKAQDGFFNGLVNIVVKVMGDVFPELKQREAHIREIIAAEEASFGKTLLKGIEKFKKAAQDVQGK 455 (1009)
Q Consensus 376 lRrilRRa~r~~~~~lg~~~~fl~~lv~~v~~~~~~~ypel~~~~~~I~~ii~~Ee~~F~~tl~~g~~~l~~~~~~~~~~ 455 (1009)
||||||||+|+|+ +||++.+||++|||+|++.|++.||||.++++.|++||..||++|.+||++|+++|++++++++++
T Consensus 303 lRrilRRa~r~~~-~lg~~~~fl~~lv~~~~~~m~~~ypel~~~~~~i~~ii~~Ee~~f~~tl~~G~~~l~~~~~~~~~~ 381 (851)
T TIGR00344 303 LRRLIRRALRHGK-KLGLKEAFLYKLVPTLIEVLGDYYPELKEKQEFVEQILELEEERFAKTLERGLRLFEKLLKKLGKK 381 (851)
T ss_pred HHHHHHHHHHHHH-HhCCCchHHHHHHHHHHHHHhhhChHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 9999999999995 799999999999999999999999999999999999999999999999999999999999876567
Q ss_pred CCChhhhhhhhccCCCChHHHHHHHHHcCceeChhhHHHHHHHHHHHhHhhhccccCCccccchhHHHHHhhcCCCCccc
Q 001826 456 VLSGQDAFILWDTYGFPLDLTQLMAEERGLLVDIEGFNNAMDEARERSRSAQNKQAGGAIVMDADATAALHKRGVLATDD 535 (1009)
Q Consensus 456 ~l~g~~af~LydtyGfP~dlt~~~a~e~g~~vd~~~f~~~~~~~~~~sr~~~~~~~~~~~~~~~~~~~~l~~~~~~~T~~ 535 (1009)
.|||++||+||||||||+|||++||+|+|++||+++|+++|++||++||++++... +..+ +..+.. ..++| +
T Consensus 382 ~i~g~~af~LydTyGfP~dlt~~~a~e~g~~vd~~~F~~~~~~~~~~sr~~~~~~~---~~~~---~~~~~~-~~~~t-~ 453 (851)
T TIGR00344 382 ELDGEDAFKLYDTYGFPVELTKEIAEERGLTVDIPGFETLMAEQRERSKAASQTIS---FELQ---EIALAN-VYPAT-E 453 (851)
T ss_pred ccCHHHHHHHHHccCCCHHHHHHHHHHcCCccCHHHHHHHHHHHHHHHhhhhhccc---cccc---HHHHhc-ccCCc-c
Confidence 89999999999999999999999999999999999999999999999998654321 1111 222322 12445 5
Q ss_pred ccCcccceeeeEEEEEEEeCCeeeeeecCCCeEEEEecccccccCCCCCCCCeEEEEcccccEEEEeEEEECCEEEEEEE
Q 001826 536 SFKFIWFQDHKSVIKAIYTGSEFIESVVPGNEVGIVLASSSFYAEQGGQIFDEGFIEGLFGSFYVRNVQIYGGFVIHIGS 615 (1009)
Q Consensus 536 ~~~Y~y~~~~~a~Vl~i~~~~~~~~~~~~~~~~~vvLD~T~FYpegGGQ~~D~G~I~~~~~~~~V~dv~~~~g~i~H~~~ 615 (1009)
+.+|+ ..+++|+|++++.+++.++++..++.++|+||+|+|||||||||+|+|+|..++..++|.+|++.+|.++|++.
T Consensus 454 ~l~Y~-~~~~~a~V~~i~~~~~~v~~~~~g~~~~vvLd~T~FYpEgGGQp~D~G~I~~~~~~~~V~dv~~~~g~i~H~~~ 532 (851)
T TIGR00344 454 FLGYE-DLEFEAKVIGLFEDGKPVDEAEAGQSVYVILDQTPFYAESGGQIGDTGYLIANDGKFRVVDVQKPNGVVFHFGE 532 (851)
T ss_pred cccee-cccccEEEEEEEeCCccceecccCCceEEEEeCCCCCCCCCCCCCCEEEEecCCcEEEEEEEEEECCEEEEEEE
Confidence 89999 58899999999988888888888888999999999999999999999999876667999999999999999987
Q ss_pred eecccccCCCCCEEEEEEehhhhhhhhhhchHHHHHHHHHHHHhCCccccccccccCCceEEEecCCCCCCHHHHHHHHH
Q 001826 616 LTEGAGRFSVGEEVICKVDYDRRKLIAPNHTCTHMLNFALREVLGDHVDQKGSVVLPEKLRFDFSHGKPVDPEHLRRIES 695 (1009)
Q Consensus 616 ~~~~~~~l~~G~~V~~~ID~~rR~~~m~~HTAtHLL~aAL~~vlg~~v~q~Gs~v~~d~~r~Df~~~~~lt~e~L~~IE~ 695 (1009)
+.. +++++|++|.+.|||+||+++|++|||+|||++||+++||.+++|.|++++++++||||++++++|++++++||+
T Consensus 533 ~~~--g~l~~G~~V~~~VD~~rR~~~m~~HTAtHLL~aAL~~vlg~~v~q~Gs~v~~d~~r~Df~~~~~lt~eel~~IE~ 610 (851)
T TIGR00344 533 VEG--GSLKVGDKVIAVIDEKRRLRIMRNHSATHLLHAALQKVLGNHVWQAGSLVSVKKLRFDFSHYRALTREELEKIED 610 (851)
T ss_pred ecc--CCCCCCCEEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHhCCceEeccCcccCCcEEEEecCCCCCCHHHHHHHHH
Confidence 654 678999999999999999999999999999999999999999999999999999999999988999999999999
Q ss_pred HHHHHHHcCCCEEEEEcCHHHHhcccCchhhcCCcCCCCEEEEEecccccccccCCCCCcccceeEeeccCCCccccccc
Q 001826 696 IVNEQIKAELDVFSKEATLAEAKCINGLRAVFGEVYPDPVRVVAIGRKVEDLLADPENKEWLSISAELCGGTHLSNTREA 775 (1009)
Q Consensus 696 ~~NeiI~~n~pV~~~~~~~eEA~~~~g~~~~f~e~y~d~VRVV~Ig~~~~~ll~~~~~~~~~~~d~e~CgGTHV~nTgeI 775 (1009)
.||++|++|+||.+.+++++||+++ +.+++|+++|++.||||+|+ ++|.++||||||+|||+|
T Consensus 611 ~vNelI~~n~pV~~~~~~~eeA~~~-~~~~~~~e~y~~~VRVV~Ig----------------~~d~e~CgGTHV~nTgeI 673 (851)
T TIGR00344 611 LVNEQILANIPIKVIFMDLDEAKAK-GAFALFGEKYGEKVRVVSVG----------------DVSVELCGGTHVRNTGEI 673 (851)
T ss_pred HHHHHHHhCCceEEEEeCHHHHHhc-chhhhcCCCCCCeEEEEEEC----------------CeeccCCCCCccCChhhC
Confidence 9999999999999999999999997 55667888899999999998 589999999999999999
Q ss_pred ccEEEeeeccccCCceEEEEEcchhHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHhhhcCCCCcCCCCHHHHHHHHH
Q 001826 776 EAFALLSEEGIAKGIRRITAVTTGLAYKAFEAACSLEKEVDDASKIEGSLLEKTVASLKSKVDGAAIPAPKKADIRAKIA 855 (1009)
Q Consensus 776 g~fkI~~~~~~~~Gv~RI~~vtG~~A~~~~~~~~~~~~~l~~l~~~~~~~i~k~l~~~~~~~~~~~i~~~~~~~l~~~l~ 855 (1009)
|.|+|++++++++|++||+|+||.+|+++.++..+.+++++..++++ ..++..+++
T Consensus 674 g~~kI~~~~~~~~G~~RIe~v~G~~A~~~~~~~~~~l~~l~~~L~~~------------------------~~~i~~~v~ 729 (851)
T TIGR00344 674 GLFKIVKESGIAAGVRRIEAVTGNAAIEYLNEQEDKLKELADILKVT------------------------PNELPKKIE 729 (851)
T ss_pred eEEEEEEEeEecCCeEEEEEEEcHHHHHHHHHHHHHHHHHHHHhCCC------------------------HHHHHHHHH
Confidence 99999999999999999999999999999988888877777766642 346778888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCCccEEEEEeccCCCHHHHHHHHHHHHhccCCcEEEEEEeCCCCe
Q 001826 856 LLQNQVRKAQKKVAEENLQKAVKVATETAEAAA-SNGKPFCISRVEVGLDAAAVREAVLKVIEQKGMPVMVFSTDETTNK 934 (1009)
Q Consensus 856 ~l~~elk~l~ke~~~l~~~~a~~~a~~l~~~~~-~~~~~~iv~~~~~~~d~~~L~~~a~~l~~~~~~~vvll~~~~~~~k 934 (1009)
++++++++++|++++++.+++...++.+.+.+. .++.++++..++ +.+++.|+++++.+++..+..++++++. .+++
T Consensus 730 ~l~~e~k~l~k~~~~l~~~l~~~~~~~l~~~~~~~~~~~~i~~~~~-~~d~~~lr~la~~l~~~~~~~vvll~~~-~~~k 807 (851)
T TIGR00344 730 RFFEEWKALQKELESLKLKIADQKIDELKDKAETINGVKVLVEVVD-AKDMKSLKTMADRLKSKLGSAIYVLASF-ANGK 807 (851)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCeEEEEEEcc-CCCHHHHHHHHHHHHhhcCCeEEEEEEc-CCCe
Confidence 899999999999999988888877777766544 456777777775 5589999999999988655566666653 4578
Q ss_pred EEEEEeeCCCcccccCccHHHHHHHHHhhcCCccCCCCCCCeeeec
Q 001826 935 AVVCAGVPEKSDQSKQLEVSEWLTAALQPLKGRCGKGKGGLASGQV 980 (1009)
Q Consensus 935 ~~~~~~v~~~~~~~~~~~A~~~~k~v~~~lgGkGG~Gk~~~AQG~g 980 (1009)
+.+++++++++ .+++++|++|++++++.+||||| |+|+||||+|
T Consensus 808 ~~~v~~~~~~~-~~~~~~A~~lvk~~~~~~gGkGG-G~~~~AQggg 851 (851)
T TIGR00344 808 VKLVCGVSNDV-LNKGIKAGELINQIAQVLGGKGG-GRPDLAQAGG 851 (851)
T ss_pred EEEEEEEChhH-hhcCCCHHHHHHHHHHHcCCCCC-CcHHhcccCC
Confidence 88888888876 66679999999999999999999 9999999985
No 5
>PRK00252 alaS alanyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=3.9e-227 Score=2069.24 Aligned_cols=842 Identities=46% Similarity=0.770 Sum_probs=766.5
Q ss_pred CCChhHHHHHHHHhhhhCCCeeecCCCCccCCCCCcccccccccccccccccccCCCCcccccccccccccccccCCCCC
Q 001826 57 EWPATKVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFANAGMNQYKPIFLGTADPNTQLSKLTRACNTQKCIRAGGKHN 136 (1009)
Q Consensus 57 ~~~~~eiR~~fl~fF~~~gH~~v~s~slvp~~dptllftnAGm~qfk~~flg~~~p~~~~~~~~r~~~~QkCiR~gGkhn 136 (1009)
.||++|||++||+||++|||+++|||||||+|||||||||||||||||||+|+++|| ++|+||||||||+ |
T Consensus 1 ~~~~~eiR~~fl~fF~~~~H~~v~s~~lvp~~d~~llf~nAGm~~fk~~f~g~~~p~-----~~r~~~~QkCiR~----n 71 (865)
T PRK00252 1 MMTSAEIRQKFLDFFESKGHTVVPSASLVPKNDPTLLFTNAGMVQFKDYFLGQEKPP-----YPRATTSQKCIRT----N 71 (865)
T ss_pred CCCHHHHHHHHHHHHHhCCCEEecCCCcCCCCCCCeeeeccchhhhhHHhcCCCCCC-----CCCcccccccccc----c
Confidence 489999999999999999999999999999999999999999999999999999887 4799999999999 8
Q ss_pred CCCCCCCCCCcccccccccccccccccHHHHHHHHHHHcccccCCCCCceEEEEECCCCcCCCCCcHHHHHHHHhc--CC
Q 001826 137 DLDDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWAWELLTKVYRLPADRLYATYFGGDEKAGLAPDNEARDIWLKF--LP 214 (1009)
Q Consensus 137 Dld~VG~t~rH~TfFEMlGn~SfgdYfK~eai~~awe~lt~~l~i~~~rL~vT~~~~~~~~~~~~D~E~~~iW~~~--~~ 214 (1009)
||||||+|+|||||||||||||||||||+|||+|||||||++|||||+|||||||. +|+||++||++. +|
T Consensus 72 Dld~VG~t~rHhTfFEMlGn~sfgdYfK~eai~~awe~lt~~~~i~~~~l~vt~~~--------~D~e~~~iW~~~~g~~ 143 (865)
T PRK00252 72 DLENVGYTARHHTFFEMLGNFSFGDYFKEEAIEWAWELLTSVLGLPKEKLYVTVYE--------DDDEAYDIWKKEIGVP 143 (865)
T ss_pred chhhccCCCCchHHHHHhcccchhhhhHHHHHHHHHHHHHHHhCCCHHHEEEEEcC--------CCHHHHHHHHhccCCC
Confidence 99999999999999999999999999999999999999999999999999999997 489999999977 99
Q ss_pred CCCcccCCCCCCcccCCCCCCCcCceeEEeecCCCC--CCCCCCCCCCCceEEEeeecccccccCCCCccccCCCCcccc
Q 001826 215 ASRVLPFGCKDNFWEMGDTGPCGPCSEIHYDRTGNR--DAASLVNNDDPTCIEIWNIVFIQFNRESDGSLKPLPAKHVDT 292 (1009)
Q Consensus 215 ~~~i~~~~~~dNfW~mG~~GpcGPcsEI~yd~~~~~--~~~~~~~~~~~r~lEiwNlVFmq~~~~~~g~l~~Lp~~~IDT 292 (1009)
++||+++|.+||||+||++|||||||||||||+... +...++|.|+||||||||||||||||+++|+|.|||+|||||
T Consensus 144 ~~~i~~~~~~dNfW~~G~~GpcGPcsEi~~d~g~~~~~~~~~~~~~~~~~~lEiwNlVF~q~~~~~~g~~~~Lp~~~iDT 223 (865)
T PRK00252 144 PERIIRIGKKDNFWSMGDTGPCGPCSEIFYDRGEEYWGGPPGSPEEDGDRYIEIWNLVFMQFNRDEDGNLTPLPKKNIDT 223 (865)
T ss_pred HHHeecCCccCCccccCCCcCCCCCeEEEEecCcccCCCCCCCCcCCCCcEEEEeeeeeEeeeecCCCceeeCCCCeeec
Confidence 999999999999999999999999999999997532 334678899999999999999999999999999999999999
Q ss_pred cccHHHHHHHHcCCCCCccccccHHHHHHHHHHhCCCCCCCCCCCCccccccchhhhhhhhhhhheeeecCCCccCCCCc
Q 001826 293 GLGFERLTSILQNKMSNYDTDVFMPIFDAIQQATGARPYSGKVGADDADKVDMAYRVVADHIRTLSFAIADGSCPGNEGR 372 (1009)
Q Consensus 293 GmGlERl~~vlqg~~snydtdlf~pli~~i~~~~~~~~y~g~~~~~~~~~~~~~~rviaDH~R~~~~~i~DGv~Psn~gr 372 (1009)
|||||||+|||||++||||||+|.|||++|++++|+ +|. .++||||||||+||++|||+||++|||+||
T Consensus 224 G~GlER~~~ilq~~~snydtd~f~~~i~~i~~~~~~-~y~----------~~~a~rviaDH~R~~~f~i~DG~~Psn~gr 292 (865)
T PRK00252 224 GMGLERIAAVLQGVHSNYETDLFRPLIKAIEELTGV-KYE----------DDVSFRVIADHIRAVAFLIADGVLPSNEGR 292 (865)
T ss_pred CcCHHHHHHHHcCCCCcchhhhHHHHHHHHHHHhCC-CCC----------CCceEEEEcchHHHHHHHHccCcccCCCCc
Confidence 999999999999999999999999999999999997 463 257999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHHHhhhCCCcchhhhHHHHHHHHhcccChhhHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001826 373 EYVLRRILRRAVRYGSEVLKAQDGFFNGLVNIVVKVMGDVFPELKQREAHIREIIAAEEASFGKTLLKGIEKFKKAAQDV 452 (1009)
Q Consensus 373 gYvlRrilRRa~r~~~~~lg~~~~fl~~lv~~v~~~~~~~ypel~~~~~~I~~ii~~Ee~~F~~tl~~g~~~l~~~~~~~ 452 (1009)
|||||||||||+|++ +.||++.|||++|||.|++.|++.||||.++++.|++||+.||++|.+||++|+++|++++++.
T Consensus 293 gYvlRrilRRa~r~~-~~lg~~~~~l~~lv~~~~~~~~~~ypel~~~~~~i~~ii~~Ee~~f~~tl~~G~~~~~~~~~~~ 371 (865)
T PRK00252 293 GYVLRRILRRAVRHG-RLLGIKEPFLYKLVPVVIDEMGDAYPELKEKQDLIEKVLKAEEERFLKTLERGLKLLEEALAKL 371 (865)
T ss_pred chHHHHHHHHHHHHH-HHhCCCchHHHHHHHHHHHHHhhhChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999 6899999999999999999999999999999999999999999999999999999999999876
Q ss_pred c-CCCCChhhhhhhhccCCCChHHHHHHHHHcCceeChhhHHHHHHHHHHHhHhhhccccCCccccchhHHHHHhhcCCC
Q 001826 453 Q-GKVLSGQDAFILWDTYGFPLDLTQLMAEERGLLVDIEGFNNAMDEARERSRSAQNKQAGGAIVMDADATAALHKRGVL 531 (1009)
Q Consensus 453 ~-~~~l~g~~af~LydtyGfP~dlt~~~a~e~g~~vd~~~f~~~~~~~~~~sr~~~~~~~~~~~~~~~~~~~~l~~~~~~ 531 (1009)
+ ++.|||++||+||||||||+|||++||+|+|++||+++|+++|++||++||+.++.... ...+..+.. ..
T Consensus 372 ~~~~~l~g~~~f~LydtyGfP~dlt~~~a~e~g~~vd~~~f~~~~~~~~~~s~~~~~~~~~------~~~~~~~~~-~~- 443 (865)
T PRK00252 372 KAGKVLSGEDAFKLYDTYGFPLDLTAEIARERGLTVDEEGFEAAMEEQRERARAARKFKGD------YNALEELLD-DL- 443 (865)
T ss_pred cCCCccCHHHHHHHHhccCCCHHHHHHHHHHcCCCcCHHHHHHHHHHHHHHHHhhhhcccc------hhHHHHHhh-cC-
Confidence 4 25899999999999999999999999999999999999999999999999875432210 112233332 12
Q ss_pred CcccccCcccceeeeEEEEEEEeCCeeeeeecCCCeEEEEecccccccCCCCCCCCeEEEEcccccEEEEeEEEE-CCEE
Q 001826 532 ATDDSFKFIWFQDHKSVIKAIYTGSEFIESVVPGNEVGIVLASSSFYAEQGGQIFDEGFIEGLFGSFYVRNVQIY-GGFV 610 (1009)
Q Consensus 532 ~T~~~~~Y~y~~~~~a~Vl~i~~~~~~~~~~~~~~~~~vvLD~T~FYpegGGQ~~D~G~I~~~~~~~~V~dv~~~-~g~i 610 (1009)
+|+ |.+|+ ..+++|+|++|+.++++++++.+++.++|+||+|+|||||||||+|+|+|.. +..++|.+|++. +|.+
T Consensus 444 ~t~-f~~Y~-~~~~~a~v~~i~~~~~~~~~~~~g~~~~vvLd~T~FYpegGGQ~~D~G~I~~-~~~~~V~~v~~~~~g~i 520 (865)
T PRK00252 444 ATE-FVGYD-TLEAEAKVLALFVDGESVDSAKAGEEVEVVLDKTPFYAESGGQVGDTGVIED-GGVFEVTDTQKPPNGLI 520 (865)
T ss_pred CCe-eeeee-eccccEEEEEEEeCCceeeeccCCCeEEEEEeCCCCCCCCCCCCCCEEEEee-CcEEEEEEEEEccCCEE
Confidence 454 88999 6789999999998888888888888899999999999999999999999977 667999999998 9999
Q ss_pred EEEEEeecccccCCCCCEEEEEEehhhhhhhhhhchHHHHHHHHHHHHhCCccccccccccCCceEEEecCCCCCCHHHH
Q 001826 611 IHIGSLTEGAGRFSVGEEVICKVDYDRRKLIAPNHTCTHMLNFALREVLGDHVDQKGSVVLPEKLRFDFSHGKPVDPEHL 690 (1009)
Q Consensus 611 ~H~~~~~~~~~~l~~G~~V~~~ID~~rR~~~m~~HTAtHLL~aAL~~vlg~~v~q~Gs~v~~d~~r~Df~~~~~lt~e~L 690 (1009)
+|++.... +++++|++|.+.|||+||+++|++|||+|||++|++++||.++.|.|++++++++||||++++++|++++
T Consensus 521 ~H~~~~~~--~~l~~G~~V~~~ID~~rR~~~m~~HTa~HLL~~al~~~lg~~v~q~Gs~~~~~~~r~Df~~~~~lt~eel 598 (865)
T PRK00252 521 VHRGKVEE--GELKVGDEVTAEVDEERRRAIARNHSATHLLHAALREVLGEHVTQAGSLVAPDRLRFDFSHFEALTPEEL 598 (865)
T ss_pred EEEEEecc--CCCCCCCEEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHhhhheEeccCcccCCeEEEEeecCCCCCHHHH
Confidence 99997544 6789999999999999999999999999999999999999999999999999999999999889999999
Q ss_pred HHHHHHHHHHHHcCCCEEEEEcCHHHHhcccCchhhcCCcCCCCEEEEEecccccccccCCCCCcccceeEeeccCCCcc
Q 001826 691 RRIESIVNEQIKAELDVFSKEATLAEAKCINGLRAVFGEVYPDPVRVVAIGRKVEDLLADPENKEWLSISAELCGGTHLS 770 (1009)
Q Consensus 691 ~~IE~~~NeiI~~n~pV~~~~~~~eEA~~~~g~~~~f~e~y~d~VRVV~Ig~~~~~ll~~~~~~~~~~~d~e~CgGTHV~ 770 (1009)
.+||+.||++|++|+||.+.+++++||++. +++++|+++|++.||||+|+ ++++++||||||+
T Consensus 599 ~~IE~~vN~lI~~n~pV~~~~~~~~eA~~~-~~~~~~~~~y~~~VRVV~Ig----------------~~d~~~CgGTHV~ 661 (865)
T PRK00252 599 RKIEDLVNEKIRENLPVETEEMSIEEAKKM-GAMALFGEKYGDEVRVVSIG----------------DFSIELCGGTHVS 661 (865)
T ss_pred HHHHHHHHHHHHhCCCeEEEEeCHHHHHhC-CchhhccccCCCeEEEEEEC----------------CceeeCCCCCccC
Confidence 999999999999999999999999999996 77888888899999999998 5899999999999
Q ss_pred cccccccEEEeeeccccCCceEEEEEcchhHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHhhhcCCCCcCCCCHHHH
Q 001826 771 NTREAEAFALLSEEGIAKGIRRITAVTTGLAYKAFEAACSLEKEVDDASKIEGSLLEKTVASLKSKVDGAAIPAPKKADI 850 (1009)
Q Consensus 771 nTgeIg~fkI~~~~~~~~Gv~RI~~vtG~~A~~~~~~~~~~~~~l~~l~~~~~~~i~k~l~~~~~~~~~~~i~~~~~~~l 850 (1009)
|||+||.|+|++.+++++|++||+|+||.+|++++++..+.+++++++++++ ..++
T Consensus 662 nTgeIg~~kI~~~~~~~~g~~RI~~v~G~~A~~~~~~~~~~l~~~~~~l~~~------------------------~~~l 717 (865)
T PRK00252 662 NTGDIGLFKIVSESGVAAGVRRIEAVTGEAALEYLNEQEALLKELAALLKAK------------------------PSEL 717 (865)
T ss_pred CcccCeEEEEEEEeeecCCeEEEEEEECHHHHHHHHHHHHHHHHHHHHhCCC------------------------HHHH
Confidence 9999999999999999999999999999999999998888888887776653 3578
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCCccEEEEEeccCCCHHHHHHHHHHHHhccCCcEEEEEEe
Q 001826 851 RAKIALLQNQVRKAQKKVAEENLQKAVKVATETAEAAA-SNGKPFCISRVEVGLDAAAVREAVLKVIEQKGMPVMVFSTD 929 (1009)
Q Consensus 851 ~~~l~~l~~elk~l~ke~~~l~~~~a~~~a~~l~~~~~-~~~~~~iv~~~~~~~d~~~L~~~a~~l~~~~~~~vvll~~~ 929 (1009)
.++++++++++++++|++++++.+++...++.+.+++. .++.++++..++ +.+++.|+.+++.+++..+..+++++.
T Consensus 718 ~~~v~~l~~e~k~l~k~~~~l~~~l~~~~~~~l~~~~~~i~~~~~vv~~~~-~~d~~~L~~la~~l~~~~~~~vvll~~- 795 (865)
T PRK00252 718 PERVEALLEELKELEKELEQLKAKLAAAAAGDLLAQAKEVNGVKVLAAQVE-GVDAKALRTLADDLKDKLGSGVVVLAT- 795 (865)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCeEEEEEEec-CCCHHHHHHHHHHHHhhcCCeEEEEEE-
Confidence 88899999999999999999999988888887776543 355667666664 679999999999998753345555553
Q ss_pred CCCCeEEEEEeeCCCcccccCccHHHHHHHHHhhcCCccCCCCCCCeeeeccCCcc
Q 001826 930 ETTNKAVVCAGVPEKSDQSKQLEVSEWLTAALQPLKGRCGKGKGGLASGQVSGFYM 985 (1009)
Q Consensus 930 ~~~~k~~~~~~v~~~~~~~~~~~A~~~~k~v~~~lgGkGG~Gk~~~AQG~g~~~~~ 985 (1009)
..++++.+++++++++ ..++++|++|++++++.+||||| |++.+|||+|++++.
T Consensus 796 ~~~~k~~~vv~v~~~~-~~~gl~A~~l~k~l~~~lgGkGG-Gk~~~AQGgg~~~~~ 849 (865)
T PRK00252 796 VEDGKVSLVVAVTKDL-TDKGLKAGDLVKELAKIVGGKGG-GRPDMAQAGGKDPAK 849 (865)
T ss_pred ccCCeEEEEEEEChhH-hhcCcCHHHHHHHHHHhcCCCCC-CcHHHeeeCCCCHHH
Confidence 3356888888888776 55679999999999999999999 999999999977764
No 6
>TIGR03683 A-tRNA_syn_arch alanyl-tRNA synthetase. This family of alanyl-tRNA synthetases is limited to the archaea, and is a subset of those sequences identified by the model pfam07973 covering the second additional domain (SAD) of alanyl and threonyl tRNA synthetases.
Probab=100.00 E-value=5.3e-204 Score=1859.50 Aligned_cols=788 Identities=27% Similarity=0.440 Sum_probs=701.4
Q ss_pred CCCCCCCCChhHHHHHHHHhhhhCCCeeecCCCCccCCCCCcccccccccccccccc-cccCCCCccccccccccccccc
Q 001826 51 ADPQVVEWPATKVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFANAGMNQYKPIFL-GTADPNTQLSKLTRACNTQKCI 129 (1009)
Q Consensus 51 ~~~~~~~~~~~eiR~~fl~fF~~~gH~~v~s~slvp~~dptllftnAGm~qfk~~fl-g~~~p~~~~~~~~r~~~~QkCi 129 (1009)
..+..++||++|||++||+||++|||++||||||||+||++||||||||+||||||+ |.++||+ +|+|+|||||
T Consensus 49 ~~~~~~~~~~~eiR~~fl~FF~~~gH~~v~s~pvvprw~dDllft~Agm~~Fkp~f~~G~~~pp~-----~r~~~sQkCi 123 (902)
T TIGR03683 49 NPIFSKKYTLDEMREAFLSFFEKHGHTRIKRYPVVARWRDDVYLTIASIADFQPWVTSGLVPPPA-----NPLVISQPCI 123 (902)
T ss_pred CCCcCCCCCHHHHHHHHHHHHHhCCCEEeCCcCcCcCCCCCeeEeecchhhhhHhhcCCCCCCCC-----CCceeccccc
Confidence 334557799999999999999999999999999999999999999999999999998 9998874 6999999999
Q ss_pred ccCCCCCCCCCCCCCCCcccccccccccccc-----cccHHHHHHHHHHHcccccCCCCCceEEEEECCCCcCCCCCcHH
Q 001826 130 RAGGKHNDLDDVGKDTYHHTFFEMLGNWSFG-----DYFKNEAIEWAWELLTKVYRLPADRLYATYFGGDEKAGLAPDNE 204 (1009)
Q Consensus 130 R~gGkhnDld~VG~t~rH~TfFEMlGn~Sfg-----dYfK~eai~~awe~lt~~l~i~~~rL~vT~~~~~~~~~~~~D~E 204 (1009)
|+ |||||||+|+||||||||||||||| ||||+|||+|||||| ++||||++|| |+
T Consensus 124 R~----nDldnVG~t~rH~TfFEMlGn~sFg~~~~~dYfK~EaI~~a~e~l-~~lgi~~~~i--~~-------------- 182 (902)
T TIGR03683 124 RL----NDIDNVGRTGRHLTCFEMMAHHAFNYPDKEIYWKDETVEYCFEFL-EELGIDPEEI--TY-------------- 182 (902)
T ss_pred cc----cccccccCCCCcchhhhhccceeeCCCCcccCcHHHHHHHHHHHH-HHcCCCHHHe--ee--------------
Confidence 99 8999999999999999999999999 999999999999999 9999999998 32
Q ss_pred HHHHHHhcCCCCCcccCCCCCCcccCCCCCCCcCceeEEeecCCCCCCCCCCCCCCCceEEEeeecccccccCC------
Q 001826 205 ARDIWLKFLPASRVLPFGCKDNFWEMGDTGPCGPCSEIHYDRTGNRDAASLVNNDDPTCIEIWNIVFIQFNRES------ 278 (1009)
Q Consensus 205 ~~~iW~~~~~~~~i~~~~~~dNfW~mG~~GpcGPcsEI~yd~~~~~~~~~~~~~~~~r~lEiwNlVFmq~~~~~------ 278 (1009)
+||||+|| ||||||||||| + | |||||||||||||++
T Consensus 183 -------------------~enfW~~G--GpcGPcsEi~~-~--g--------------lEiwnlVFmq~~~~~~~~~~~ 224 (902)
T TIGR03683 183 -------------------KESPWEGG--GNAGPCFEVIV-G--G--------------LELATLVFMQYEEDKEGEIEI 224 (902)
T ss_pred -------------------cCCccCCC--CCCCCceeeee-C--c--------------Eeeeeeeeeeecccccccccc
Confidence 69999999 99999999999 2 2 999999999999998
Q ss_pred -CCccccCCCCcccccccHHHHHHHHcCCCCCccccccHHHHHHHHHHhCCC-----------CCCCCCCCCcccccc--
Q 001826 279 -DGSLKPLPAKHVDTGLGFERLTSILQNKMSNYDTDVFMPIFDAIQQATGAR-----------PYSGKVGADDADKVD-- 344 (1009)
Q Consensus 279 -~g~l~~Lp~~~IDTGmGlERl~~vlqg~~snydtdlf~pli~~i~~~~~~~-----------~y~g~~~~~~~~~~~-- 344 (1009)
||+|+|||+||||||||||||+|||||+|||||| +|.|||++|++++|++ +|+|.++.++.++++
T Consensus 225 ~~g~~~~Lp~k~VDTG~GLER~~~v~qg~~t~ydt-~f~~ii~~i~~~~g~~y~~~~~~~~~~~~~g~~~~~~~~~~~~~ 303 (902)
T TIGR03683 225 KGGRYSEMPLKIVDTGYGLERFVWASQGTPTAYDA-IFPEIVDKLKENAGVELIDEEILAENARLAGMMDIEDEEDLREL 303 (902)
T ss_pred CCCeeeeCCCCceecCCCHHHHHHHHcCCCchHHH-HHHHHHHHHHHHhCCCcccchhhhhhhhhccccCccccchhhHH
Confidence 9999999999999999999999999999999999 9999999999999975 467777755443222
Q ss_pred ----------------------chhhhhhhhhhhheeeecCCCccCCCCcchHHHHHHHHHHHHHHhhhCCCcchhhhHH
Q 001826 345 ----------------------MAYRVVADHIRTLSFAIADGSCPGNEGREYVLRRILRRAVRYGSEVLKAQDGFFNGLV 402 (1009)
Q Consensus 345 ----------------------~~~rviaDH~R~~~~~i~DGv~Psn~grgYvlRrilRRa~r~~~~~lg~~~~fl~~lv 402 (1009)
.++||||||+||++|||+||++|||+|||||||||||||+|++ +.||++.+ |++||
T Consensus 304 ~~~~a~~~~~~~~~~~~~~~~~~~~rvIaDH~R~~~f~i~DGv~PsN~grGYvlRrilRRa~r~~-~~lg~~~~-l~~lv 381 (902)
T TIGR03683 304 RKKVADKIGIDVEELEKIIAPVERIYAIADHTRCLAFMLGDGIVPSNVKEGYLARLVIRRTLRLM-RELGLDIP-LSDLV 381 (902)
T ss_pred hhhhhhhcccchhhhhhhccccceEEEEcchHHHHHHHHhcCCccCCCCcchHHHHHHHHHHHHH-HHhCCCcc-HHHHH
Confidence 4679999999999999999999999999999999999999999 57999999 99999
Q ss_pred HHHHHHhcccChhhHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChhhhhhhhccCCCChHHHHHHHHH
Q 001826 403 NIVVKVMGDVFPELKQREAHIREIIAAEEASFGKTLLKGIEKFKKAAQDVQGKVLSGQDAFILWDTYGFPLDLTQLMAEE 482 (1009)
Q Consensus 403 ~~v~~~~~~~ypel~~~~~~I~~ii~~Ee~~F~~tl~~g~~~l~~~~~~~~~~~l~g~~af~LydtyGfP~dlt~~~a~e 482 (1009)
+.+++.|++.||||.++++.|++||+.||++|.+||++|.++|++++++ ++.|||++||+||||||||+|||++||+|
T Consensus 382 ~~~~~~~~~~ypel~~~~~~I~~ii~~Ee~~f~~Tl~~G~~~~~~~~~~--~~~i~g~~~f~LyDTyGfP~dl~~eia~e 459 (902)
T TIGR03683 382 EMQLEELKKIYPELKENKDYILDILDLEEEKYRETLERGRRIVERLLKT--KKEIPLDDLIELYDSHGIPPEIVKEIAAE 459 (902)
T ss_pred HHHHHHHhhhChhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCcCCHHHHHHHHHccCCCHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999985 56899999999999999999999999999
Q ss_pred cCceeChh-hHHHHHHHHHHHhHhhhccccCCccccchhHHHHHhhcCCCCcccccCcc--cceeeeEEEEEEEeCCeee
Q 001826 483 RGLLVDIE-GFNNAMDEARERSRSAQNKQAGGAIVMDADATAALHKRGVLATDDSFKFI--WFQDHKSVIKAIYTGSEFI 559 (1009)
Q Consensus 483 ~g~~vd~~-~f~~~~~~~~~~sr~~~~~~~~~~~~~~~~~~~~l~~~~~~~T~~~~~Y~--y~~~~~a~Vl~i~~~~~~~ 559 (1009)
+|++||++ +|+++|++|+++||++.+. ..... ..+ .++|+|+ +.+|+ |..+++|+|++++.
T Consensus 460 ~g~~vd~~~~F~~~~~~~~~~~~~~~~~------~~~~~--~~~--~~~~~T~-~l~y~~~~~~e~~a~Vl~i~~----- 523 (902)
T TIGR03683 460 LGAEVEIPDNFYSIVAERHEKEEKEEEL------PKDYE--ERA--KDLPETR-RLFYEDPTMREFEAKVLGVFD----- 523 (902)
T ss_pred cCCcccCCccHHHHHHHHHHHHHhcccc------ccchh--HHH--hcCCCce-EeccccCccceEEEEEEEEEc-----
Confidence 99999998 9999999999998764211 01111 111 2467886 67776 34789999999972
Q ss_pred eeecCCCeEEEEecccccccCCCCCCCCeEEEEcccccEEEEeEEEECCEEEEEEEeecccccCCCCCEEEEEEehhhhh
Q 001826 560 ESVVPGNEVGIVLASSSFYAEQGGQIFDEGFIEGLFGSFYVRNVQIYGGFVIHIGSLTEGAGRFSVGEEVICKVDYDRRK 639 (1009)
Q Consensus 560 ~~~~~~~~~~vvLD~T~FYpegGGQ~~D~G~I~~~~~~~~V~dv~~~~g~i~H~~~~~~~~~~l~~G~~V~~~ID~~rR~ 639 (1009)
.+|+||+|+|||||||||+|+|+|..+++.++|.+|++.+|.++|++. . +.+++|++|.+.|||+||+
T Consensus 524 --------~~vvLd~T~FYpEgGGQ~~D~G~I~~~~~~~~V~dv~k~~g~i~H~~~--~--~~l~~G~~V~~~VD~~rR~ 591 (902)
T TIGR03683 524 --------NYVVLDQTAFYPEGGGQPADTGYLITNGGKIRVVDVQKVGGVIVHKVD--G--EGIKEGDEVKGEIDWERRL 591 (902)
T ss_pred --------CEEEEeCCCCCCCCCCCCCCEEEEEeCCcEEEEEEEEEECCEEEEEeC--C--CCCCCCCEEEEEECHHHHH
Confidence 269999999999999999999999887778999999999999999985 2 4488999999999999999
Q ss_pred hhhhhchHHHHHHHHHHHHhCCccccccccccCCceEEEecCCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEcCHHHHhc
Q 001826 640 LIAPNHTCTHMLNFALREVLGDHVDQKGSVVLPEKLRFDFSHGKPVDPEHLRRIESIVNEQIKAELDVFSKEATLAEAKC 719 (1009)
Q Consensus 640 ~~m~~HTAtHLL~aAL~~vlg~~v~q~Gs~v~~d~~r~Df~~~~~lt~e~L~~IE~~~NeiI~~n~pV~~~~~~~eEA~~ 719 (1009)
++|++|||+|||++|++++||.|++|+|++++++++||||++++++|++++++||+.||++|++|+||.+.+++++||++
T Consensus 592 ~~m~~HTAtHLL~~alr~vlG~~v~q~Gs~v~~d~~r~Df~~~~~lt~eel~~IE~~vN~~I~~n~pV~~~~~~~~eA~~ 671 (902)
T TIGR03683 592 RLMRHHTATHVLLAAARRVLGRHVWQAGAQKDTDKARLDITHYKRISEEEIKEIERLANRIVMENRPVSVKWMDRNEAEQ 671 (902)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCceeecCccccCCcEEEEEeCCCCCCHHHHHHHHHHHHHHHHhCCCeEEEEeCHHHHHh
Confidence 99999999999999999999999999999999999999999988999999999999999999999999999999999999
Q ss_pred ccCchhhcC-CcCCCCEEEEEecccccccccCCCCCcccceeEeeccCCCcccccccccEEEeeeccccCCceEEEEEcc
Q 001826 720 INGLRAVFG-EVYPDPVRVVAIGRKVEDLLADPENKEWLSISAELCGGTHLSNTREAEAFALLSEEGIAKGIRRITAVTT 798 (1009)
Q Consensus 720 ~~g~~~~f~-e~y~d~VRVV~Ig~~~~~ll~~~~~~~~~~~d~e~CgGTHV~nTgeIg~fkI~~~~~~~~Gv~RI~~vtG 798 (1009)
..+++.+.+ ++|++.||||+|+ ++|+++||||||.|||+||.|+|++++++++|++||+++||
T Consensus 672 ~~~~~l~~~~~~~~~~VRVV~Ig----------------~~d~e~CgGTHV~nTgeIG~~kI~~~~~i~~Gv~RIe~v~G 735 (902)
T TIGR03683 672 KYGFRLYQGGVPPGREIRVVEIE----------------DWDVQACGGTHCRNTGEIGPIKILKTERIQDGVERIEFAAG 735 (902)
T ss_pred cCchhhhccCCCCCCeEEEEEEC----------------CeeeeCCCCCCccchhcCceEEEEEEEEecCCeEEEEEEEC
Confidence 866654443 4677899999998 58999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHhhhcCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001826 799 GLAYKAFEAACSLEKEVDDASKIEGSLLEKTVASLKSKVDGAAIPAPKKADIRAKIALLQNQVRKAQKKVAEENLQKAVK 878 (1009)
Q Consensus 799 ~~A~~~~~~~~~~~~~l~~l~~~~~~~i~k~l~~~~~~~~~~~i~~~~~~~l~~~l~~l~~elk~l~ke~~~l~~~~a~~ 878 (1009)
.+|+++.++.++.+++++++++++ ..++.++++++++++++++|++.+++.+++..
T Consensus 736 ~~A~~~~~~~~~~l~~~a~~L~~~------------------------~~~l~~~v~~l~~e~k~l~k~l~~l~~~l~~~ 791 (902)
T TIGR03683 736 EAALEYIQELEDLLRESSDILKVP------------------------PEQLPETVKRFFEEWKEQRKEIERLKKKLAEL 791 (902)
T ss_pred hHHHHHHHHHHHHHHHHHHHhCCC------------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999888888888777653 24677788888889999999999998888887
Q ss_pred HHHHHHHHhh-cCCccEEEEEeccCCCHHHHHHHHHHHHhccCCcEEEEEEeCCCCeEEEEEeeCCCcccccCccHHHHH
Q 001826 879 VATETAEAAA-SNGKPFCISRVEVGLDAAAVREAVLKVIEQKGMPVMVFSTDETTNKAVVCAGVPEKSDQSKQLEVSEWL 957 (1009)
Q Consensus 879 ~a~~l~~~~~-~~~~~~iv~~~~~~~d~~~L~~~a~~l~~~~~~~vvll~~~~~~~k~~~~~~v~~~~~~~~~~~A~~~~ 957 (1009)
.++.+...+. .++.++++..+ +.|++.|+.+++.+++. + .++++.+. .++++.+++++++++ +++|++|+
T Consensus 792 ~~~~l~~~~~~i~g~~vi~~~~--~~d~~~lr~la~~l~~~-~-~vvvl~~~-~~~k~~~v~~~~~~~----~~~A~~lv 862 (902)
T TIGR03683 792 KIYELISEAERIGGVEVIVELV--DADMDELQEIAEKLAEK-G-LVVVLVSG-GGGNGRVVISSGEKA----GVDAGELV 862 (902)
T ss_pred HHHHHHhhheecCCEEEEEEEe--CCCHHHHHHHHHHHhcC-C-cEEEEEEc-cCCcEEEEEEEChhH----hhhHHHHH
Confidence 7777765443 45667766665 46899999999999764 3 44444433 245666667666543 58999999
Q ss_pred HHHHhhcCCccCCCCCCCeeeeccCCcc
Q 001826 958 TAALQPLKGRCGKGKGGLASGQVSGFYM 985 (1009)
Q Consensus 958 k~v~~~lgGkGG~Gk~~~AQG~g~~~~~ 985 (1009)
+++++.+||||| |+|++|||+|++++.
T Consensus 863 k~l~~~lgGkGG-Gk~~~AQGgg~~~~~ 889 (902)
T TIGR03683 863 REIAKELGGGGG-GKPDLAQGGGPDDLK 889 (902)
T ss_pred HHHHHhcCCCcC-CchhheeecCCCHHH
Confidence 999999999999 999999999987764
No 7
>PRK13902 alaS alanyl-tRNA synthetase; Provisional
Probab=100.00 E-value=1.1e-202 Score=1847.59 Aligned_cols=788 Identities=27% Similarity=0.457 Sum_probs=701.4
Q ss_pred CCCCCCCCCChhHHHHHHHHhhhhCCCeeecCCCCccCCCCCcccccccccccccccc-cccCCCCcccccccccccccc
Q 001826 50 GADPQVVEWPATKVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFANAGMNQYKPIFL-GTADPNTQLSKLTRACNTQKC 128 (1009)
Q Consensus 50 ~~~~~~~~~~~~eiR~~fl~fF~~~gH~~v~s~slvp~~dptllftnAGm~qfk~~fl-g~~~p~~~~~~~~r~~~~QkC 128 (1009)
|..+..++||++|||++||+||++|||++||||||||+||++||||||||+||||||+ |.++||+ +|+|+||||
T Consensus 51 ~~~~~~~~~~~~eiR~~Fl~FF~~~gH~~v~s~pvvprw~dDllft~Agm~~Fkp~f~~G~~~pp~-----~~~~~sQ~C 125 (900)
T PRK13902 51 GNPIFSKKYTLKEMREKFLSFFEKHGHTRIERYPVVARWRDDVYLTIASIYDFQPWVTSGLVPPPA-----NPLVISQPC 125 (900)
T ss_pred CCCCcCCCCCHHHHHHHHHHHHHhCCCEEcCCcCcCCCCCCCeeeeecchhhhhHHhcCCCCCCCC-----CCceecccc
Confidence 4445667799999999999999999999999999999999999999999999999998 9998864 699999999
Q ss_pred cccCCCCCCCCCCCCCCCcccccccccccccc-----cccHHHHHHHHHHHcccccCCCCCceEEEEECCCCcCCCCCcH
Q 001826 129 IRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFG-----DYFKNEAIEWAWELLTKVYRLPADRLYATYFGGDEKAGLAPDN 203 (1009)
Q Consensus 129 iR~gGkhnDld~VG~t~rH~TfFEMlGn~Sfg-----dYfK~eai~~awe~lt~~l~i~~~rL~vT~~~~~~~~~~~~D~ 203 (1009)
||+ |||||||+|+||||||||||||||| ||||+|||+|||||||++|||||+|| |+
T Consensus 126 iR~----nDldnVG~t~rH~T~FEMlGn~sFg~~~~~~YfK~eaI~~a~e~lt~~lgi~~~~I--~~------------- 186 (900)
T PRK13902 126 IRL----NDIDNVGRTGRHLTSFEMMAHHAFNYPDKEVYWKDETVEYCFEFFTKELGIDPEEI--TF------------- 186 (900)
T ss_pred cch----hhhhhccccCCchhhhhhccceeeCCCCcccccHHHHHHHHHHHHHhhcCCCHHHe--ee-------------
Confidence 999 8999999999999999999999999 99999999999999999999999998 22
Q ss_pred HHHHHHHhcCCCCCcccCCCCCCcccCCCCCCCcCceeEEeecCCCCCCCCCCCCCCCceEEEeeecccccccCCCCccc
Q 001826 204 EARDIWLKFLPASRVLPFGCKDNFWEMGDTGPCGPCSEIHYDRTGNRDAASLVNNDDPTCIEIWNIVFIQFNRESDGSLK 283 (1009)
Q Consensus 204 E~~~iW~~~~~~~~i~~~~~~dNfW~mG~~GpcGPcsEI~yd~~~~~~~~~~~~~~~~r~lEiwNlVFmq~~~~~~g~l~ 283 (1009)
+||||+|| ||||||||||| + | |||||||||||+|+ +|+|+
T Consensus 187 --------------------~enfW~~G--GpcGPcsEi~~-~--g--------------lEiwnlVFmqy~~~-~g~~~ 226 (900)
T PRK13902 187 --------------------KESWWEGG--GNAGPCFEVLV-R--G--------------LELATLVFMQYKKD-GNRYV 226 (900)
T ss_pred --------------------cccccCCC--CCCCCceeeee-C--C--------------EEeeeeeeeEEEcC-CCeee
Confidence 69999999 99999999999 2 2 99999999999998 89999
Q ss_pred cCCCCcccccccHHHHHHHHcCCCCCccccccHHHHHHHHHHhCCC-----------CCCCCCCCCccccc---------
Q 001826 284 PLPAKHVDTGLGFERLTSILQNKMSNYDTDVFMPIFDAIQQATGAR-----------PYSGKVGADDADKV--------- 343 (1009)
Q Consensus 284 ~Lp~~~IDTGmGlERl~~vlqg~~snydtdlf~pli~~i~~~~~~~-----------~y~g~~~~~~~~~~--------- 343 (1009)
|||+||||||||||||+||+||+|||||| +|.|||++|++++|++ +|+|.++.++.+++
T Consensus 227 ~Lp~k~VDTG~GLER~~~v~qg~~t~ydt-~f~~ii~~i~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~a~ 305 (900)
T PRK13902 227 EMPLKIVDTGYGLERIAWASQGTPTAYDA-IFGELVDKLKENAGVEEPDEEILAEAARLAGLMDIEEIEDLRSLRQKVAK 305 (900)
T ss_pred eCCCCeeeCCcCHHHHHHHHcCCCchHHH-HHHHHHHHHHHHhCCCcccchhhhhhhhhcccCCcccchhHHHHHHHHHh
Confidence 99999999999999999999999999999 9999999999999974 36676664332211
Q ss_pred ---------------cchhhhhhhhhhhheeeecCCCccCCCCcchHHHHHHHHHHHHHHhhhCCCcchhhhHHHHHHHH
Q 001826 344 ---------------DMAYRVVADHIRTLSFAIADGSCPGNEGREYVLRRILRRAVRYGSEVLKAQDGFFNGLVNIVVKV 408 (1009)
Q Consensus 344 ---------------~~~~rviaDH~R~~~~~i~DGv~Psn~grgYvlRrilRRa~r~~~~~lg~~~~fl~~lv~~v~~~ 408 (1009)
..++|+||||+||++|||+||++|||+|||||||||||||+|++ +.||++.+ |++||+.+++.
T Consensus 306 ~~~~~~~~~~~~~~~~~~~~vIaDH~R~~~f~i~DGv~PsN~grGYvlRrilRRa~r~~-~~lg~~~~-l~~lv~~~~~~ 383 (900)
T PRK13902 306 KLGIDVEELEELLEPLEAIYAIADHTRTLAFMLGDGIVPSNVGEGYLARLVIRRTLRLL-DELGLDVP-LSELVDMQIDE 383 (900)
T ss_pred hcccchhhhhhhccccceEEEEecHHHHHHHHHhCCCcCCCCCcchHHHHHHHHHHHHH-HHhCCCcc-HHHHHHHHHHH
Confidence 15789999999999999999999999999999999999999999 47999999 99999999999
Q ss_pred hcccChhhHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChhhhhhhhccCCCChHHHHHHHHHcCceeC
Q 001826 409 MGDVFPELKQREAHIREIIAAEEASFGKTLLKGIEKFKKAAQDVQGKVLSGQDAFILWDTYGFPLDLTQLMAEERGLLVD 488 (1009)
Q Consensus 409 ~~~~ypel~~~~~~I~~ii~~Ee~~F~~tl~~g~~~l~~~~~~~~~~~l~g~~af~LydtyGfP~dlt~~~a~e~g~~vd 488 (1009)
|++.||||.++++.|++||..||++|.+||++|.++|++++++. +.|||++||+||||||||+|||++||+|+|++||
T Consensus 384 ~~~~ypel~~~~~~I~~ii~~Ee~~f~~tl~~G~~~~~~~~~~~--~~l~g~~~f~LYDt~G~P~dl~~eia~e~g~~vd 461 (900)
T PRK13902 384 LKEDYPELKENRDYILDIVDLEEEKYRETLERGKRIVERLAKKK--EEIPLDDLIELYDSHGIPPEIVKEIAKKKGVEVE 461 (900)
T ss_pred HhhhChhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCCCHHHHhhhhhcCCCCHHHHHHHHHHcCCccC
Confidence 99999999999999999999999999999999999999999874 6799999999999999999999999999999999
Q ss_pred h-hhHHHHHHHHHHHhHhhhccccCCccccchhHHHHHhhcCCCCcccccCcc--cceeeeEEEEEEEeCCeeeeeecCC
Q 001826 489 I-EGFNNAMDEARERSRSAQNKQAGGAIVMDADATAALHKRGVLATDDSFKFI--WFQDHKSVIKAIYTGSEFIESVVPG 565 (1009)
Q Consensus 489 ~-~~f~~~~~~~~~~sr~~~~~~~~~~~~~~~~~~~~l~~~~~~~T~~~~~Y~--y~~~~~a~Vl~i~~~~~~~~~~~~~ 565 (1009)
+ ++|+++|++|+++|+++.+. . .. .. ..+ .++|+|+ +.+|+ |..+++|+|++++.
T Consensus 462 ~p~~F~~~~~~~~~~~~~~~~~--~----~~-~~-~~~--~~~~~T~-~l~y~~~~~~~~~a~Vl~i~~----------- 519 (900)
T PRK13902 462 VPDNFYSLVAERHEKAEEEEEE--P----VV-EE-ERL--KDLPETE-KLFYEDPYMREFEAKVLGVID----------- 519 (900)
T ss_pred chhhHHHHHHHHHHHHhhcccc--c----cc-hh-hHh--hcCCCce-EeccccCccceEEEEEEEEEc-----------
Confidence 9 89999999999998863111 0 00 00 111 2567886 77777 34789999999973
Q ss_pred CeEEEEecccccccCCCCCCCCeEEEEcccccEEEEeEEEECCEEEEEEEeecccccCCCCCEEEEEEehhhhhhhhhhc
Q 001826 566 NEVGIVLASSSFYAEQGGQIFDEGFIEGLFGSFYVRNVQIYGGFVIHIGSLTEGAGRFSVGEEVICKVDYDRRKLIAPNH 645 (1009)
Q Consensus 566 ~~~~vvLD~T~FYpegGGQ~~D~G~I~~~~~~~~V~dv~~~~g~i~H~~~~~~~~~~l~~G~~V~~~ID~~rR~~~m~~H 645 (1009)
.+|+||+|+|||||||||+|+|+|..++..++|.+|++.+|.++|.+. . +.+.+|++|.+.|||+||+++|++|
T Consensus 520 --~~vvLD~T~FYpEgGGQ~~D~G~I~~~~~~~~V~dv~k~~g~i~H~~~--~--~~~~~G~~V~~~VD~~rR~~~mr~H 593 (900)
T PRK13902 520 --NYVVLDQTAFYPEGGGQPADTGVLIVDGKGYKVVDVQKVGGVIVHVLE--G--EPPKKGDEVRGEIDWERRYRLMRHH 593 (900)
T ss_pred --CEEEEeCCCCCCCCCCCCCCEEEEEeCCcEEEEEEEEEECCEEEEEeC--C--CCCCCCCEEEEEECHHHHHHHHHHH
Confidence 269999999999999999999999877778999999999999999985 2 4455699999999999999999999
Q ss_pred hHHHHHHHHHHHHhCCccccccccccCCceEEEecCCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEcCHHHHhcccCchh
Q 001826 646 TCTHMLNFALREVLGDHVDQKGSVVLPEKLRFDFSHGKPVDPEHLRRIESIVNEQIKAELDVFSKEATLAEAKCINGLRA 725 (1009)
Q Consensus 646 TAtHLL~aAL~~vlg~~v~q~Gs~v~~d~~r~Df~~~~~lt~e~L~~IE~~~NeiI~~n~pV~~~~~~~eEA~~~~g~~~ 725 (1009)
||+|||++|++++||.|++|.|++++++++||||++++++|++++++||+.||++|++|+||.+.+++++||++..+++.
T Consensus 594 TAtHLL~~al~~vlG~~v~q~Gs~v~~d~~r~Df~~~~~lt~eel~~IE~~vN~~I~~n~pV~~~~~~~~eA~~~~~~~l 673 (900)
T PRK13902 594 TATHIILAAARKVLGDHVWQAGAQKTVDKARLDITHYKRITREEVKEIERLANEIVMENRPVKVEWMDRNEAEQKYGFRL 673 (900)
T ss_pred HHHHHHHHHHHHHhCCceeecCccccCCCEEEEEeCCCCCCHHHHHHHHHHHHHHHHcCCCEEEEecCHHHHHhccchhh
Confidence 99999999999999999999999999999999999988999999999999999999999999999999999999877665
Q ss_pred hc-CCcCCCCEEEEEecccccccccCCCCCcccceeEeeccCCCcccccccccEEEeeeccccCCceEEEEEcchhHHHH
Q 001826 726 VF-GEVYPDPVRVVAIGRKVEDLLADPENKEWLSISAELCGGTHLSNTREAEAFALLSEEGIAKGIRRITAVTTGLAYKA 804 (1009)
Q Consensus 726 ~f-~e~y~d~VRVV~Ig~~~~~ll~~~~~~~~~~~d~e~CgGTHV~nTgeIg~fkI~~~~~~~~Gv~RI~~vtG~~A~~~ 804 (1009)
+. +++|++.||||+|+ ++|+++||||||.|||+||.|+|++++++++|++||+++||.+|+++
T Consensus 674 ~~~g~~~~~~VRVV~Ig----------------~~d~e~CgGTHV~nTgeIG~~kI~~~e~i~~Gv~RIe~v~G~~A~~~ 737 (900)
T PRK13902 674 YQGGVPPGKTIRVVEIG----------------DWDVEACGGTHVSNTGEIGPIKILKTERIQDGVERLEFAAGDAAVEY 737 (900)
T ss_pred hccCCCCCCeEEEEEEC----------------CeeeeCCCCCCcCcHhhCeeEEEEEEEEecCCeEEEEEEEChHHHHH
Confidence 54 35788899999998 58999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhccccchhHHHHHHHhhhcCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001826 805 FEAACSLEKEVDDASKIEGSLLEKTVASLKSKVDGAAIPAPKKADIRAKIALLQNQVRKAQKKVAEENLQKAVKVATETA 884 (1009)
Q Consensus 805 ~~~~~~~~~~l~~l~~~~~~~i~k~l~~~~~~~~~~~i~~~~~~~l~~~l~~l~~elk~l~ke~~~l~~~~a~~~a~~l~ 884 (1009)
.++.++.+++++++++++ ..++.++++++++++++++|++.+++.+++...++.+.
T Consensus 738 ~~~~~~~l~~~a~~L~~~------------------------~~el~~~v~kl~ee~k~l~kei~~l~~~l~~~~~~~l~ 793 (900)
T PRK13902 738 IQELEDLLKEAAEILGVP------------------------PEQLPKTVERFFEEWKEQKKEIEKLRKELAELLASELL 793 (900)
T ss_pred HHHHHHHHHHHHHHhCCC------------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999888888888777653 24677888888899999999999999888888887776
Q ss_pred HHhh-cCCccEEEEEeccCCCHHHHHHHHHHHHhccCCcEEEEEEeCCCCeEEEEEeeCCCcccccCccHHHHHHHHHhh
Q 001826 885 EAAA-SNGKPFCISRVEVGLDAAAVREAVLKVIEQKGMPVMVFSTDETTNKAVVCAGVPEKSDQSKQLEVSEWLTAALQP 963 (1009)
Q Consensus 885 ~~~~-~~~~~~iv~~~~~~~d~~~L~~~a~~l~~~~~~~vvll~~~~~~~k~~~~~~v~~~~~~~~~~~A~~~~k~v~~~ 963 (1009)
.++. .++.++++..+ +.+++.|+.+++.+++..+ .+++++ . +++..+++++++++ .++|++|++++++.
T Consensus 794 ~~~~~~~g~~~i~~~~--~~d~~~Lr~~a~~l~~~~~-~vvl~~-~--~~k~~~v~~~~~~~----~~~a~~lvk~l~~~ 863 (900)
T PRK13902 794 SKAEEVGGVKVVVEEV--DADEDELRKIANELAKEGK-VALVVL-G--NGGGQIVVGVGEDV----GVNAGEIVRELAKV 863 (900)
T ss_pred hhheEeCCEEEEEEEe--CCCHHHHHHHHHHHHhcCC-eEEEEE-c--CCcEEEEEEEChhh----hhhHHHHHHHHHHh
Confidence 6544 46667777666 5689999999999988543 344444 2 34556667766654 38999999999999
Q ss_pred cCCccCCCCCCCeeeeccCCcc
Q 001826 964 LKGRCGKGKGGLASGQVSGFYM 985 (1009)
Q Consensus 964 lgGkGG~Gk~~~AQG~g~~~~~ 985 (1009)
+||||| |+|+||||+|++++.
T Consensus 864 ~gGkGG-Gk~~~AQGgg~~~~~ 884 (900)
T PRK13902 864 LGGKGG-GKPDLAQGGGPDPKK 884 (900)
T ss_pred cCCCCC-CchHheeeCCCCHHH
Confidence 999999 999999999987764
No 8
>PRK01584 alanyl-tRNA synthetase; Provisional
Probab=100.00 E-value=2.7e-190 Score=1657.23 Aligned_cols=583 Identities=41% Similarity=0.730 Sum_probs=543.7
Q ss_pred CChhHHHHHHHHhhhhCCCeeecCCCCccCCCCCcccccccccccccccccccCCCCcccccccccccccccccCCCCCC
Q 001826 58 WPATKVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFANAGMNQYKPIFLGTADPNTQLSKLTRACNTQKCIRAGGKHND 137 (1009)
Q Consensus 58 ~~~~eiR~~fl~fF~~~gH~~v~s~slvp~~dptllftnAGm~qfk~~flg~~~p~~~~~~~~r~~~~QkCiR~gGkhnD 137 (1009)
||++|||++||+||++|||+++|||||||+|||||||||||||||||||+|.++|+ ++|+||||||||+ ||
T Consensus 1 ~~~~eiR~~fl~FF~~kgH~~~~s~slvp~~d~tllftnAGm~~fk~~f~G~~~p~-----~~r~~~~QkCiR~----~D 71 (594)
T PRK01584 1 MTLDELRKKYIDFFKSKGHVEIAGKSLIPENDPTVLFTTAGMHPLVPYLLGEPHPS-----GTRLVDVQKCLRT----GD 71 (594)
T ss_pred CCHHHHHHHHHHHHHhCCCEEcCCCCcCCCCCCCeeeeccchhhhhHHhcCCCCCC-----CCCcccccccccc----cc
Confidence 78999999999999999999999999999999999999999999999999999886 4799999999999 79
Q ss_pred CCCCCCCCCcccccccccccccccccHHHHHHHHHHHcccc--cCCCCCceEEEEECCCCcCCCCCcHHHHHHHHhc-CC
Q 001826 138 LDDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWAWELLTKV--YRLPADRLYATYFGGDEKAGLAPDNEARDIWLKF-LP 214 (1009)
Q Consensus 138 ld~VG~t~rH~TfFEMlGn~SfgdYfK~eai~~awe~lt~~--l~i~~~rL~vT~~~~~~~~~~~~D~E~~~iW~~~-~~ 214 (1009)
||||| |+|||||||||||||||||||+|||+|||||||++ |||||+|||||||+||+. +++|+||++||+++ +|
T Consensus 72 le~VG-~~rHhTfFEMlGnfSfgdYfK~eai~~awe~lt~~~~l~l~~~rl~vTv~~~~~~--~~~D~Ea~~iW~~~g~~ 148 (594)
T PRK01584 72 IDEVG-DLSHLTFFEMLGNWSLGAYFKEESIKYSFEFLTSPDYLNIPKDKLYVTVFEGDEE--IPRDEETASVWESLGIP 148 (594)
T ss_pred ccccC-CCcchhHHHhhccccHhhhhHHHHHHHHHHHhccchhcCCCHHHeEEEEeCCCCC--CCCCHHHHHHHHHcCCC
Confidence 99999 89999999999999999999999999999999998 999999999999999885 89999999999999 99
Q ss_pred CCCcccCCCCCCcc-cCCCCCCCcCceeEEeecCCCCCCC--CCCCCCCCceEEEeeecccccccCCCCccccCCCCccc
Q 001826 215 ASRVLPFGCKDNFW-EMGDTGPCGPCSEIHYDRTGNRDAA--SLVNNDDPTCIEIWNIVFIQFNRESDGSLKPLPAKHVD 291 (1009)
Q Consensus 215 ~~~i~~~~~~dNfW-~mG~~GpcGPcsEI~yd~~~~~~~~--~~~~~~~~r~lEiwNlVFmq~~~~~~g~l~~Lp~~~ID 291 (1009)
++||++++.+|||| +||++||||||||||||+|+. ++. +.++++|+|||||||||||||||++||+|+|||+||||
T Consensus 149 ~~rI~~~~~~dNfW~~~G~~GPCGPcsEI~~d~g~~-~~~~~~~~~~~~~r~lEiwNlVFmq~~~~~~g~~~~Lp~k~ID 227 (594)
T PRK01584 149 KDRIFYLSREHNWWGPVGETGPCGPDTEIFVDTGKP-KCSVNCRPTCSCGKYFEIWNNVFMQYNKDEDGNYEELKRKCVD 227 (594)
T ss_pred HHHeeeCCCCCCcccccCCCcCCCCceEEEEecCCc-ccccccCCCCCCCceEEEeeeeeeeeeecCCCccccCCCCcee
Confidence 99999999999999 799999999999999999653 221 23456889999999999999999999999999999999
Q ss_pred ccccHHHHHHHHcCCCCCccccccHHHHHHHHHHhCCCCCCCCCCCCccccccchhhhhhhhhhhheeeecC--CCccCC
Q 001826 292 TGLGFERLTSILQNKMSNYDTDVFMPIFDAIQQATGARPYSGKVGADDADKVDMAYRVVADHIRTLSFAIAD--GSCPGN 369 (1009)
Q Consensus 292 TGmGlERl~~vlqg~~snydtdlf~pli~~i~~~~~~~~y~g~~~~~~~~~~~~~~rviaDH~R~~~~~i~D--Gv~Psn 369 (1009)
||||||||+|||||++||||||+|.|||++|++++|+ +|.. . +..+.||||||||+||++|||+| |++|||
T Consensus 228 TGmGLERl~~vlqg~~s~ydtdlf~pii~~i~~~~~~-~y~~----~--~~~~~a~rvIaDH~R~~~f~i~D~~Gv~PsN 300 (594)
T PRK01584 228 TGMGIERTIAFLQGKSSVYDTEAFTPIIKRIEKISGK-IYGQ----N--EEDDRSIRIIADHIRAACFILGDPFVVLPSN 300 (594)
T ss_pred CCcCHHHHHHHHcCCCCccchhhhHHHHHHHHHHhCC-CcCC----C--CCCceeEEEEecHHHHHHHHhhcccCCCCCC
Confidence 9999999999999999999999999999999999997 4731 1 23468999999999999999999 999999
Q ss_pred CCcchHHHHHHHHHHHHHHhhhCCCcchhhhHHHHHHHHhcccChhhHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001826 370 EGREYVLRRILRRAVRYGSEVLKAQDGFFNGLVNIVVKVMGDVFPELKQREAHIREIIAAEEASFGKTLLKGIEKFKKAA 449 (1009)
Q Consensus 370 ~grgYvlRrilRRa~r~~~~~lg~~~~fl~~lv~~v~~~~~~~ypel~~~~~~I~~ii~~Ee~~F~~tl~~g~~~l~~~~ 449 (1009)
+|||||||||||||+|+|+ .||++.+||++||++|++.|++.||||.++++.|++||+.||++|.+||++|+++|++.+
T Consensus 301 ~grGYvlRrilRRa~r~~~-~lg~~~~fl~~lv~~v~~~~~~~ypel~~~~~~I~~ii~~EE~~F~~tl~~G~~~l~~~i 379 (594)
T PRK01584 301 VGQGYVLRRLIRRSIRHAK-KLGIESHFLADLVDSVEEIYGSFYPELTEKKDFIKEELNKEEEKFFKTLRKGEQEFIKLI 379 (594)
T ss_pred CCCchHHHHHHHHHHHHHH-HhCCCchhHHHHHHHHHHHHhhhChHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999994 799999999999999999999999999999999999999999999999999999999999
Q ss_pred Hhhc-CCCCChhhhhhhhccCCCChHHHHHHHHHcCceeChhhHHHHHHHHHHHhHhhhccccCCccccchhHHHHHhhc
Q 001826 450 QDVQ-GKVLSGQDAFILWDTYGFPLDLTQLMAEERGLLVDIEGFNNAMDEARERSRSAQNKQAGGAIVMDADATAALHKR 528 (1009)
Q Consensus 450 ~~~~-~~~l~g~~af~LydtyGfP~dlt~~~a~e~g~~vd~~~f~~~~~~~~~~sr~~~~~~~~~~~~~~~~~~~~l~~~ 528 (1009)
++++ +++|||++||+||||||||+|||++||+|+|++||+++|+++|++||++||++ +
T Consensus 380 ~~~~~~~~~~g~~af~LydTyGfP~dlt~~~a~e~g~~vd~~~f~~~~~~~~~~~~~~-~-------------------- 438 (594)
T PRK01584 380 PNLGSSKIIPGDIAFKLYDTYGFPYEITEELASEYGFTVDREGFDEHFKKHQKVSKKG-A-------------------- 438 (594)
T ss_pred HHhccCCccCHHHHHhhhccCCCCHHHHHHHHHHcCCeecHHHHHHHHHHHHHHHhhc-c--------------------
Confidence 8765 56899999999999999999999999999999999999999999999887642 0
Q ss_pred CCCCcccccCcccceeeeEEEEEEEeCCeeeeeecCCCeEEEEecccccccCCCCCCCCeEEEEcccccEEEEeEEEECC
Q 001826 529 GVLATDDSFKFIWFQDHKSVIKAIYTGSEFIESVVPGNEVGIVLASSSFYAEQGGQIFDEGFIEGLFGSFYVRNVQIYGG 608 (1009)
Q Consensus 529 ~~~~T~~~~~Y~y~~~~~a~Vl~i~~~~~~~~~~~~~~~~~vvLD~T~FYpegGGQ~~D~G~I~~~~~~~~V~dv~~~~g 608 (1009)
.. .|. ||++|+|.
T Consensus 439 ---~~-~f~---------------------------------------------g~~~d~g~------------------ 451 (594)
T PRK01584 439 ---DK-VFK---------------------------------------------GGLADHSY------------------ 451 (594)
T ss_pred ---cc-ccc---------------------------------------------CCcCcccc------------------
Confidence 00 010 35666654
Q ss_pred EEEEEEEeecccccCCCCCEEEEEEehhhhhhhhhhchHHHHHHHHHHHHhCCccccccccccCCceEEEecCCCCCCHH
Q 001826 609 FVIHIGSLTEGAGRFSVGEEVICKVDYDRRKLIAPNHTCTHMLNFALREVLGDHVDQKGSVVLPEKLRFDFSHGKPVDPE 688 (1009)
Q Consensus 609 ~i~H~~~~~~~~~~l~~G~~V~~~ID~~rR~~~m~~HTAtHLL~aAL~~vlg~~v~q~Gs~v~~d~~r~Df~~~~~lt~e 688 (1009)
.+|++|||+|||++|++++||.++.|+|+++.++++||||++++++|++
T Consensus 452 -------------------------------~~~r~HTAtHLL~~ALr~vlG~~v~q~Gs~v~~d~~r~DF~~~~~it~e 500 (594)
T PRK01584 452 -------------------------------ETTKLHTATHLLHKALRLVLGDHVRQKGSNITAERLRFDFSHPEKMTDD 500 (594)
T ss_pred -------------------------------cHHHHHHHHHHHHHHHHHHcCccceeecCCcCCCcEEEEEeCCCCCCHH
Confidence 4899999999999999999999999999999999999999998899999
Q ss_pred HHHHHHHHHHHHHHcCCCEEEEEcCHHHHhcccCchhhcCCcCCCCEEEEEecccccccccCCCCCcccceeEeeccCCC
Q 001826 689 HLRRIESIVNEQIKAELDVFSKEATLAEAKCINGLRAVFGEVYPDPVRVVAIGRKVEDLLADPENKEWLSISAELCGGTH 768 (1009)
Q Consensus 689 ~L~~IE~~~NeiI~~n~pV~~~~~~~eEA~~~~g~~~~f~e~y~d~VRVV~Ig~~~~~ll~~~~~~~~~~~d~e~CgGTH 768 (1009)
++++||+.||++|++|+||++.+++++||+++ +.+++|+++|++.||||+|+ ++|.++|||||
T Consensus 501 dL~~IE~~vNeiI~~n~pV~~~~~s~eEA~~~-~~~~lf~e~y~~~VRVV~Ig----------------d~d~elCGGTH 563 (594)
T PRK01584 501 EIKKVEDIVNLQIKNDLSVKKEVMSLEEAREK-GAMALFGEKYEDIVKVYEID----------------GFSKEVCGGPH 563 (594)
T ss_pred HHHHHHHHHHHHHHhCCCeEEEEcCHHHHHhc-chhhhccccCCCcEEEEEEC----------------CeeeeCCCCCC
Confidence 99999999999999999999999999999997 56778888899999999998 58999999999
Q ss_pred cccccccccEEEeeeccccCCceEEEEEc
Q 001826 769 LSNTREAEAFALLSEEGIAKGIRRITAVT 797 (1009)
Q Consensus 769 V~nTgeIg~fkI~~~~~~~~Gv~RI~~vt 797 (1009)
|+|||+||.|+|++++++++|++||+++.
T Consensus 564 V~nTgeIG~fkI~s~~s~g~GvrRI~av~ 592 (594)
T PRK01584 564 VENTGELGTFKIQKEQSSSSGVRRIRAIL 592 (594)
T ss_pred CCCcccCceEEEEecccccCCeEEEEEEe
Confidence 99999999999999999999999999985
No 9
>PF01411 tRNA-synt_2c: tRNA synthetases class II (A); InterPro: IPR018164 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Alanyl-tRNA synthetase (6.1.1.7 from EC) is an alpha4 tetramer that belongs to class IIc. ; GO: 0000166 nucleotide binding, 0004813 alanine-tRNA ligase activity, 0005524 ATP binding, 0006419 alanyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3HY1_A 3HXZ_C 3HXY_A 3HXU_A 3HY0_B 3HXV_A 3HXX_A 3HXW_A 2E1B_A 2ZZG_B ....
Probab=100.00 E-value=3e-174 Score=1535.93 Aligned_cols=545 Identities=54% Similarity=0.928 Sum_probs=453.9
Q ss_pred HHHHHHHHhhhhCCCeeecCCCCccCCCCCccccccccccccccccccc-CCCCcccccccccccccccccCCCCCCCCC
Q 001826 62 KVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFANAGMNQYKPIFLGTA-DPNTQLSKLTRACNTQKCIRAGGKHNDLDD 140 (1009)
Q Consensus 62 eiR~~fl~fF~~~gH~~v~s~slvp~~dptllftnAGm~qfk~~flg~~-~p~~~~~~~~r~~~~QkCiR~gGkhnDld~ 140 (1009)
|||++||+||++|||++||||||||+||||||||||||+||||||+|.. +|| ++|+|+||||||+|||||||||
T Consensus 1 eiR~~fl~fF~~~gH~~v~s~~lvp~~d~~llf~~Agm~~fkp~f~g~~~~p~-----~~r~~~~Q~CiR~~GkhnDld~ 75 (552)
T PF01411_consen 1 EIREKFLDFFEKKGHTIVPSSSLVPRWDPTLLFTNAGMNQFKPYFLGGEVPPP-----ANRLVSSQKCIRTGGKHNDLDN 75 (552)
T ss_dssp HHHHHHHHHHHTTT-EEE----SS-TT-TTBSS--SGGGGGCCCCTTSSS--S-----SSCEEEEEEEE-EETTEECGGG
T ss_pred CHHHHHHHHHHHCCCEEeccCCcccCCCCCceeeHhhHHHHHHHhcCCCCCCC-----CCcccccceeeccCCCcchhhh
Confidence 7999999999999999999999999999999999999999999999998 555 4799999999999999999999
Q ss_pred CCCCCCcccccccccccccccccHHHHHHHHHHHcccccCCCCCceEEEEECCCCcCCCCCcHHHHHHHHhc--CCCCCc
Q 001826 141 VGKDTYHHTFFEMLGNWSFGDYFKNEAIEWAWELLTKVYRLPADRLYATYFGGDEKAGLAPDNEARDIWLKF--LPASRV 218 (1009)
Q Consensus 141 VG~t~rH~TfFEMlGn~SfgdYfK~eai~~awe~lt~~l~i~~~rL~vT~~~~~~~~~~~~D~E~~~iW~~~--~~~~~i 218 (1009)
||+|+|||||||||||||||||||+|||+|||||||++||||++|||||||.+ |+||++||+++ +|++||
T Consensus 76 VG~t~rH~T~FEMlGn~sfgdYfK~eai~~awe~lt~~l~i~~~~l~vt~~~~--------d~ea~~~w~~~~g~~~~~i 147 (552)
T PF01411_consen 76 VGRTGRHHTFFEMLGNFSFGDYFKEEAIEYAWEFLTEVLGIPPDRLYVTVFEW--------DGEAGEIWEKIVGGPEERI 147 (552)
T ss_dssp TTTSSS--SEEEEEEEEEECSS-HHHHHHHHHHHHHCTTT--GGGEEEEEECC--------ECCCCCCCCECCTTECCCE
T ss_pred cCCCceEeeehhhccccccccccHHHHHHHHHHHHHhhcCCChHhEEEEEeCC--------chhHHHHHHHhcCCCHHHe
Confidence 99999999999999999999999999999999999999999999999999986 56999999999 999999
Q ss_pred ccCCCCCCcccCCCCCCCcCceeEEeecCCCCC---CCCCCCCCCCceEEEeeecccccccCCCCccccCCCCccccccc
Q 001826 219 LPFGCKDNFWEMGDTGPCGPCSEIHYDRTGNRD---AASLVNNDDPTCIEIWNIVFIQFNRESDGSLKPLPAKHVDTGLG 295 (1009)
Q Consensus 219 ~~~~~~dNfW~mG~~GpcGPcsEI~yd~~~~~~---~~~~~~~~~~r~lEiwNlVFmq~~~~~~g~l~~Lp~~~IDTGmG 295 (1009)
++||.+||||+||++||||||||||||+|..+. ..+.++++++||+||||+|||||+|++||++.|||+++||||||
T Consensus 148 ~~~~~~~nfw~~g~~gpcgpcseI~~d~G~e~~~~~~~~~~~~~~~~~~eiwn~vf~q~~~~~~g~~~~L~~~~idtGmg 227 (552)
T PF01411_consen 148 LVFGKKDNFWEMGDTGPCGPCSEIFYDRGEERGCWDSQGTPTCDDDRFLEIWNLVFMQYNRDEDGSLEPLPKKNIDTGMG 227 (552)
T ss_dssp EEE-CCEEEEESSTSEEEEEEEEEEEEEECCCHHHHHHSTSSHHHHHECCCCCCCCCEEEETTTSHCCCCCCCCCCCCEE
T ss_pred EecCCCCceEECCCCCCCCCCEEEEECCCcccCccccccccccccccHHHHHHHHHHHhccccccccccccchhhhcCCC
Confidence 999999999999999999999999999976543 34567789999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCCCccccccHHHHHHHHHHhCCCCCCCCCCCCccccccchhhhhhhhhhhheeeecCCCccCCCCcchH
Q 001826 296 FERLTSILQNKMSNYDTDVFMPIFDAIQQATGARPYSGKVGADDADKVDMAYRVVADHIRTLSFAIADGSCPGNEGREYV 375 (1009)
Q Consensus 296 lERl~~vlqg~~snydtdlf~pli~~i~~~~~~~~y~g~~~~~~~~~~~~~~rviaDH~R~~~~~i~DGv~Psn~grgYv 375 (1009)
|||++++|||++||||||+|.|+++.++++++. +|. +....+.++|+||||+||++|||+||++|||+|||||
T Consensus 228 ler~~~~lq~~~s~~~tdlf~~i~~~i~~~~~~-~y~------~~~~~~~a~rvIaDH~Ra~~f~i~DGv~PsN~GrGYv 300 (552)
T PF01411_consen 228 LERLAAVLQGVRSNYDTDLFMPIIEAIEELSGV-PYK------DEEEIDVALRVIADHIRALTFAIADGVLPSNEGRGYV 300 (552)
T ss_dssp HHHHCHHHCCHCCHHHCHHTCHHHHHHHHHHC---TT------SSCCCHHHHHHHHHHHHHHHHHHHTT--SSSSHHHHH
T ss_pred cHHHHHHHhhhhhhhchhhhhhHHHHHHHHcCC-Ccc------cccccccEEEEEcchhhceeeEecCCeeecccCCcch
Confidence 999999999999999999999999999999997 572 2345678999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhCCCcchhhhHHHHHHHHhcccChhhHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-C
Q 001826 376 LRRILRRAVRYGSEVLKAQDGFFNGLVNIVVKVMGDVFPELKQREAHIREIIAAEEASFGKTLLKGIEKFKKAAQDVQ-G 454 (1009)
Q Consensus 376 lRrilRRa~r~~~~~lg~~~~fl~~lv~~v~~~~~~~ypel~~~~~~I~~ii~~Ee~~F~~tl~~g~~~l~~~~~~~~-~ 454 (1009)
||||||||+|++ +.||++.+||++||+.|++.|++.||||.++++.|++||+.||++|.+||++|+++|++++++++ +
T Consensus 301 lRriiRRa~r~~-~~lg~~~~fl~~lv~~vi~~~~~~ypel~~~~~~I~~ii~~EE~~F~~TL~~G~~~l~~~i~~~~~~ 379 (552)
T PF01411_consen 301 LRRIIRRAVRFG-RKLGIEEPFLYELVPVVIESMGDFYPELKENKDYIKDIIKEEEERFLKTLERGLKLLEKLIKKLKKK 379 (552)
T ss_dssp HHHHHHHHHHHH-HHTT-SS--HHHHHHHHHHHHTTTGTHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHH-HHhCCCccchHHHHHHHHHHhhccChhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 999999999999 68999999999999999999999999999999999999999999999999999999999999986 7
Q ss_pred CCCChhhhhhhhccCCCChHHHHHHHHHcCceeChhhHHHHHHHHHHHhHhhhccccCCccccchhHHHHHhhcCCCCcc
Q 001826 455 KVLSGQDAFILWDTYGFPLDLTQLMAEERGLLVDIEGFNNAMDEARERSRSAQNKQAGGAIVMDADATAALHKRGVLATD 534 (1009)
Q Consensus 455 ~~l~g~~af~LydtyGfP~dlt~~~a~e~g~~vd~~~f~~~~~~~~~~sr~~~~~~~~~~~~~~~~~~~~l~~~~~~~T~ 534 (1009)
++|||++||+||||||||+|||++||+|+|++||+++|+++|++||++||++++.... +..... .+ ..+++++
T Consensus 380 ~~lsge~aF~LYDTyGfP~Dlt~eia~e~gl~vD~~~f~~~m~~qr~~sr~~~~~~~~--~~~~~~---~~--~~l~~~t 452 (552)
T PF01411_consen 380 KELSGEDAFKLYDTYGFPLDLTEEIAEEKGLSVDEEGFEYAMEEQRERSRAAKKKKSS--IEEDVS---AL--AELPKTT 452 (552)
T ss_dssp SEE-HHHHHHHHHHH---HHHHHHHHHTTT-EE-HHCCHHHHHHHCHHHCCHH----------SSS---TT--TTCHHHE
T ss_pred cCCChHHheeehhccCCCHHHHHHHHHHhceeecHHHHHHHHHHHHHHhhhccccccc--hhhhHH---HH--hhhhccc
Confidence 8999999999999999999999999999999999999999999999999877553320 011111 11 1344556
Q ss_pred cccCcccceeeeEEEEEEEeCCeeeeeecCCCeEEEEecccccccCCCCCCCCeEEEEcccccEEEEeEEEECCEEEEEE
Q 001826 535 DSFKFIWFQDHKSVIKAIYTGSEFIESVVPGNEVGIVLASSSFYAEQGGQIFDEGFIEGLFGSFYVRNVQIYGGFVIHIG 614 (1009)
Q Consensus 535 ~~~~Y~y~~~~~a~Vl~i~~~~~~~~~~~~~~~~~vvLD~T~FYpegGGQ~~D~G~I~~~~~~~~V~dv~~~~g~i~H~~ 614 (1009)
+|++|+ .++++|+|++|+.+++++.++..++..+||||+|+|||||||||+|+|+|..++..+.|.+|++.+|+++|++
T Consensus 453 eF~gYe-~~~~~akVlal~~~~~~~~~v~~~~~~~VVLD~T~FYpegGGQ~~D~G~I~~~~~~~~V~dv~k~~g~i~H~~ 531 (552)
T PF01411_consen 453 EFVGYE-YLECEAKVLALFKDGEFVAKVEEGEEGYVVLDKTPFYPEGGGQPGDTGTIIGDGGEFEVTDVQKVGGVILHIG 531 (552)
T ss_dssp ETCCCC-------TT---TT--EEEEEEEEEETTEEEESEE-S--SBTTB----EEECCTTEEEEEEEEEEETTEEEEEE
T ss_pred ccceee-cccccceEEEEEeCCEEEeeecCCceEEEEECCccccCCCCCCCCCeEEEeecceEEEEEEEEEECCEEEEEE
Confidence 799999 6689999999999888888887777888999999999999999999999998888899999999999999999
Q ss_pred EeecccccCCCCCEEEEEEehhh
Q 001826 615 SLTEGAGRFSVGEEVICKVDYDR 637 (1009)
Q Consensus 615 ~~~~~~~~l~~G~~V~~~ID~~r 637 (1009)
.... +.+++|+.|.++|||+|
T Consensus 532 ~~~~--g~l~~G~~V~~~VD~eR 552 (552)
T PF01411_consen 532 EVES--GSLKVGDEVTAEVDWER 552 (552)
T ss_dssp SSG---GG--TTSEEEEEE-HHH
T ss_pred eccC--CCCCCCCEEEEEecCCC
Confidence 8654 78999999999999997
No 10
>cd00673 AlaRS_core Alanyl-tRNA synthetase (AlaRS) class II core catalytic domain. AlaRS is a homodimer. It is responsible for the attachment of alanine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its predicted structure and the presence of three characteristic sequence motifs.
Probab=100.00 E-value=8.9e-108 Score=852.49 Aligned_cols=230 Identities=63% Similarity=1.115 Sum_probs=222.0
Q ss_pred hhHHHHHHHHhhhhCCCeeecCCCCccCCCCCcccccccccccccccccccCCCCcccccccccccccccccCCCCCCCC
Q 001826 60 ATKVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFANAGMNQYKPIFLGTADPNTQLSKLTRACNTQKCIRAGGKHNDLD 139 (1009)
Q Consensus 60 ~~eiR~~fl~fF~~~gH~~v~s~slvp~~dptllftnAGm~qfk~~flg~~~p~~~~~~~~r~~~~QkCiR~gGkhnDld 139 (1009)
++|||++||+||++|||+++|||||||++|||||||||||+||||||+|+++|+ ++|+|++|||||+ ||||
T Consensus 1 ~~eiR~~fl~FF~~kgH~~v~s~slvp~dDptllFtnAGM~~Fkp~f~G~~~p~-----~~r~~~~QkCiR~----~Die 71 (232)
T cd00673 1 ASEIRETFLSFFEKKGHTRVPSSPVVPRDDPTLLFTNAGMNQFKPIFLGEVPPP-----ANRLVNSQKCIRA----GDID 71 (232)
T ss_pred ChHHHHHHHHHHHhCCCEEeCCCCcCCCCCCchheeccchhhhhHHhcCCCCCC-----CCceeeeeeceec----CChh
Confidence 479999999999999999999999999999999999999999999999999886 4799999999999 7999
Q ss_pred CCCCCCCcccccccccccccccccHHHHHHHHHHHcccccCCCCCceEEEEECCCCcCCCCCcHHHHHHHHhc--CCCCC
Q 001826 140 DVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWAWELLTKVYRLPADRLYATYFGGDEKAGLAPDNEARDIWLKF--LPASR 217 (1009)
Q Consensus 140 ~VG~t~rH~TfFEMlGn~SfgdYfK~eai~~awe~lt~~l~i~~~rL~vT~~~~~~~~~~~~D~E~~~iW~~~--~~~~~ 217 (1009)
|||+|+|||||||||||||||||||+|||+|||||||++||||++|||||||++ |+||++||.+. +|++|
T Consensus 72 nVG~t~rHhTfFEMLGNfSFgdYFK~eaI~~awe~LT~~l~l~~~rl~vTv~~~--------dde~~~~w~~~~g~~~~~ 143 (232)
T cd00673 72 NVGKTGRHHTFFEMLGNFSFGDYFKEEAIAFAWELLTEVLGLPKDRLYVSVFEG--------DDEEEAIWWWKIGLPGIR 143 (232)
T ss_pred hccccccchhhhhhhcccchhhhhHHHHHHHHHHHHHhhcCCCccceEEEEeCC--------CHHHHHHHHHhhCCCHHH
Confidence 999999999999999999999999999999999999999999999999999974 89999999988 99999
Q ss_pred cccCCCCCCcccCCCCCCCcCceeEEeecCCCCCCCCCCCCCCCceEEEeeecccccccCCCCccccCCCCcccccccHH
Q 001826 218 VLPFGCKDNFWEMGDTGPCGPCSEIHYDRTGNRDAASLVNNDDPTCIEIWNIVFIQFNRESDGSLKPLPAKHVDTGLGFE 297 (1009)
Q Consensus 218 i~~~~~~dNfW~mG~~GpcGPcsEI~yd~~~~~~~~~~~~~~~~r~lEiwNlVFmq~~~~~~g~l~~Lp~~~IDTGmGlE 297 (1009)
|++++.+||||+||++||||||||||||+++++++...+++|++|||||||||||||+|++||++.|||+||||||||||
T Consensus 144 i~~~~~~dNfW~~G~~GPCGPcsEI~yd~g~~~~~~~~~~~~~~r~lEIWNlVFmqy~r~~~g~l~pLp~k~IDTGmGlE 223 (232)
T cd00673 144 IERIGFKDNFWEMGGNGPCGPCSEIFYDRGEERDAASLPNEDDDRYLEIWNLVFMQYNRDADGTYRPLPKKIVDTGMGLE 223 (232)
T ss_pred eeeCCccCCCCCCCCCcCCCCCEEEEEccCCCcCccccccCCCCCEEEEeeeeeeeeeccCCCCCccCCCCeeeCCcCHH
Confidence 99999999999999999999999999999887766668889999999999999999999999999999999999999999
Q ss_pred HHHHHHcCC
Q 001826 298 RLTSILQNK 306 (1009)
Q Consensus 298 Rl~~vlqg~ 306 (1009)
||+|||||+
T Consensus 224 Rla~vlQg~ 232 (232)
T cd00673 224 RLVWVLQGV 232 (232)
T ss_pred HHHHHHcCC
Confidence 999999996
No 11
>COG2872 Predicted metal-dependent hydrolases related to alanyl-tRNA synthetase HxxxH domain [General function prediction only]
Probab=100.00 E-value=4.9e-45 Score=387.87 Aligned_cols=226 Identities=29% Similarity=0.430 Sum_probs=205.7
Q ss_pred cceeeeEEEEEEEeCCeeeeeecCCCeEEEEecccccccCCCCCCCCeEEEEcccccEEEEeEEEECCEEEEEEEeeccc
Q 001826 541 WFQDHKSVIKAIYTGSEFIESVVPGNEVGIVLASSSFYAEQGGQIFDEGFIEGLFGSFYVRNVQIYGGFVIHIGSLTEGA 620 (1009)
Q Consensus 541 y~~~~~a~Vl~i~~~~~~~~~~~~~~~~~vvLD~T~FYpegGGQ~~D~G~I~~~~~~~~V~dv~~~~g~i~H~~~~~~~~ 620 (1009)
|..+++|+|+.+..+ .|+||+|+|||+|||||+|+|+|.+.++...|.++.+.+..|+|++...
T Consensus 11 y~~e~~~~v~~v~~~-------------~i~ld~T~Fyp~~GGQp~D~G~l~~~~~~~~~~~~~~~~~~I~H~~~~~--- 74 (241)
T COG2872 11 YLKEFEATVVDVEDN-------------EIVLDRTIFYPTGGGQPGDTGTLIWAGGEYVVEDVTKDGEEIVHVLAEH--- 74 (241)
T ss_pred ccccceEEEEEEeCC-------------eEEEEeccccCCCCCCcCCceEEEeCCceEEEEEEEecceEEEEEecCc---
Confidence 578899999998642 6999999999999999999999999999999999999999999998632
Q ss_pred ccCCCCCEEEEEEehhhhhhhhhhchHHHHHHHHHHHHhCCccccccccccCCceEEEecCCCCCCHHHHHHHHHHHHHH
Q 001826 621 GRFSVGEEVICKVDYDRRKLIAPNHTCTHMLNFALREVLGDHVDQKGSVVLPEKLRFDFSHGKPVDPEHLRRIESIVNEQ 700 (1009)
Q Consensus 621 ~~l~~G~~V~~~ID~~rR~~~m~~HTAtHLL~aAL~~vlg~~v~q~Gs~v~~d~~r~Df~~~~~lt~e~L~~IE~~~Nei 700 (1009)
..+++|++|.+.|||+||+++||+|||+|||++++.+.++ .+..|.++.+++.|+||+.+. +++.+.++++++|++
T Consensus 75 ~~~~vG~~V~~~IDW~rRy~~mr~HTa~Hlls~~~~~~~~--~~~~g~~i~~d~~~iD~~~e~--~~~~~~~v~~~~ne~ 150 (241)
T COG2872 75 AKLKVGDKVKLKIDWERRYRHMRMHTALHLLSAVLYKVYG--ALTTGFEIGEDYARIDFDGED--TEDEIEEVEALANEL 150 (241)
T ss_pred ccCCCCCEEEEEECcHHHHHHHhhhHHHHHHHHHhhcccc--ceeecceeccccccccccccc--chhhHHHHHHHHHHH
Confidence 4578999999999999999999999999999999999998 456899999999999998654 889999999999999
Q ss_pred HHcCCCEEEEEcCHHHHhcccCchhhcCCcCC---CCEEEEEecccccccccCCCCCcccceeEeeccCCCccccccccc
Q 001826 701 IKAELDVFSKEATLAEAKCINGLRAVFGEVYP---DPVRVVAIGRKVEDLLADPENKEWLSISAELCGGTHLSNTREAEA 777 (1009)
Q Consensus 701 I~~n~pV~~~~~~~eEA~~~~g~~~~f~e~y~---d~VRVV~Ig~~~~~ll~~~~~~~~~~~d~e~CgGTHV~nTgeIg~ 777 (1009)
|.+|+||...+++++||.++|+++++-.+.++ ..+|+|+|+ ++|+++||||||+||+|||.
T Consensus 151 v~~~~~v~~~~i~~EE~~~~p~~~~~~~~~~~~~~g~iRiV~I~----------------did~qpCgGtHVk~T~EIG~ 214 (241)
T COG2872 151 VKENLPVIIYFIPREEAEKLPGLVKLKNKVPPDVEGKIRIVEIG----------------DIDVQPCGGTHVKNTGEIGE 214 (241)
T ss_pred HHcCCeeeeeecCHHHHhhCcChhhhcccCCccccceEEEEEEC----------------CeeccCCCCcccCCccceEE
Confidence 99999999999999999999999887653333 479999998 58999999999999999999
Q ss_pred EEEeeeccccCCceEEEEEcchhHH
Q 001826 778 FALLSEEGIAKGIRRITAVTTGLAY 802 (1009)
Q Consensus 778 fkI~~~~~~~~Gv~RI~~vtG~~A~ 802 (1009)
|+|++.++++++.+||+|.+|+++.
T Consensus 215 Iki~k~e~k~k~~~Rv~f~~~~~~~ 239 (241)
T COG2872 215 IKILKTEKKGKGNRRVYFTLGERAS 239 (241)
T ss_pred EEEEEEEEecCceEEEEEEeccccc
Confidence 9999999999999999999998764
No 12
>PLN02961 alanine-tRNA ligase
Probab=100.00 E-value=2.7e-44 Score=383.82 Aligned_cols=209 Identities=27% Similarity=0.380 Sum_probs=176.9
Q ss_pred eEEEEecccccccCCCCCCCCeEEEEccc--ccEEEEeEEEECCEEEEEEEeec----ccccCCCCCEEEEEEehhhhhh
Q 001826 567 EVGIVLASSSFYAEQGGQIFDEGFIEGLF--GSFYVRNVQIYGGFVIHIGSLTE----GAGRFSVGEEVICKVDYDRRKL 640 (1009)
Q Consensus 567 ~~~vvLD~T~FYpegGGQ~~D~G~I~~~~--~~~~V~dv~~~~g~i~H~~~~~~----~~~~l~~G~~V~~~ID~~rR~~ 640 (1009)
.+.|+||+|+|||||||||+|+|+|...+ ..+.|.+|++.+|.++|++.+.. +.+.|++|++|.+.|||+||+.
T Consensus 2 ~~~viLd~T~FYpegGGQp~D~G~i~~~~~~~~~~V~~v~~~~g~i~H~~~~~~~~~~~~~~l~~G~~V~~~ID~~rR~~ 81 (223)
T PLN02961 2 RIALVLDRTIFHPQGGGQPSDTGRIVISGGDTKFSVQDVRRKDGVVYHYGVFEGSNPESASPFEAGDEVTVTVDESRRKL 81 (223)
T ss_pred CeEEEeCCceEcCCCCCCCCcEEEEEecCCCcEEEEEEEEEECCEEEEEEEecCcccccCCCCCCCCEEEEEECHHHHhh
Confidence 36799999999999999999999997633 35999999999999999986531 0146889999999999999999
Q ss_pred hhhhchHHHHHHHHHHHH-hCCccccccccccCCceEEEecCCCCCCHHH----HHHHHHHHHHHHHcCCCEEEEEcCHH
Q 001826 641 IAPNHTCTHMLNFALREV-LGDHVDQKGSVVLPEKLRFDFSHGKPVDPEH----LRRIESIVNEQIKAELDVFSKEATLA 715 (1009)
Q Consensus 641 ~m~~HTAtHLL~aAL~~v-lg~~v~q~Gs~v~~d~~r~Df~~~~~lt~e~----L~~IE~~~NeiI~~n~pV~~~~~~~e 715 (1009)
+|++|||+|||++||+++ +|..+.+.|+++ +++.++||. ..++.++ +.+||+++|++|++++||++.+++++
T Consensus 82 ~m~~HTa~HLL~~al~~~~~~~~~~~~g~~~-~~~~~v~~~--~~i~~~~~~~~~~~iE~~~N~~I~~~~~V~~~~~~~~ 158 (223)
T PLN02961 82 HSRLHSAGHLLDVCMARVGLGPLEPGKGYHF-PDGPFVEYK--GKIPQGELDSKQDELEAEANELIAEGGKVSAAVLPYD 158 (223)
T ss_pred hhccCcHHHHHHHHHHHcCCCcccccccccc-CCccceeec--ccCCHHHHHhHHHHHHHHHHHHHHcCCceeEEEeCHH
Confidence 999999999999999997 777777888775 567888875 4577655 47999999999999999999999999
Q ss_pred HHhcccCchhhcCC-cCCCCEEEEEecccccccccCCCCCcccceeEeeccCCCcccccccccEEEeeeccccCCceEEE
Q 001826 716 EAKCINGLRAVFGE-VYPDPVRVVAIGRKVEDLLADPENKEWLSISAELCGGTHLSNTREAEAFALLSEEGIAKGIRRIT 794 (1009)
Q Consensus 716 EA~~~~g~~~~f~e-~y~d~VRVV~Ig~~~~~ll~~~~~~~~~~~d~e~CgGTHV~nTgeIg~fkI~~~~~~~~Gv~RI~ 794 (1009)
||+++++. +.+.. ...+.+|||+|+ +++.++||||||.||+|||.|+|++.+ +++|.+||+
T Consensus 159 ea~~~~~~-~~~~~~~~~~~vRiV~I~----------------~~d~~~CgGTHv~nT~eig~i~I~~~~-~~kg~~Rv~ 220 (223)
T PLN02961 159 EAAELCGG-SLPDYIAKDSTPRIVKIG----------------DSPGCPCGGTHVADVSEITSVKVTQIR-VKKGVTRVS 220 (223)
T ss_pred HHHHhcCC-cCCCcCCCCCceEEEEEC----------------CCccCccCCcccCchhccccEEEEEEE-ecCCEEEEE
Confidence 99987542 22221 114689999998 478999999999999999999999986 468999999
Q ss_pred EE
Q 001826 795 AV 796 (1009)
Q Consensus 795 ~v 796 (1009)
|.
T Consensus 221 ~~ 222 (223)
T PLN02961 221 YT 222 (223)
T ss_pred Ee
Confidence 74
No 13
>KOG2105 consensus Predicted metal-dependent hydrolase, contains AlaS domain [General function prediction only]
Probab=100.00 E-value=7.2e-40 Score=343.93 Aligned_cols=377 Identities=20% Similarity=0.253 Sum_probs=282.7
Q ss_pred eeEEEEEEEeCCeeeeeecCCCeEEEEecccccccCCCCCCCCeEEEEcccccEEEEeEEEECCEEEEEEEeecccccCC
Q 001826 545 HKSVIKAIYTGSEFIESVVPGNEVGIVLASSSFYAEQGGQIFDEGFIEGLFGSFYVRNVQIYGGFVIHIGSLTEGAGRFS 624 (1009)
Q Consensus 545 ~~a~Vl~i~~~~~~~~~~~~~~~~~vvLD~T~FYpegGGQ~~D~G~I~~~~~~~~V~dv~~~~g~i~H~~~~~~~~~~l~ 624 (1009)
+++.|+++-.-+. .-.+-+.+.+.|..|+.||||||||+|.|++. .+.|..|.+.|-..-|.+. .++.
T Consensus 24 fkt~vvsc~p~~~---kk~eieg~~i~lqdtiLfpegggqp~d~gf~~----~v~V~~VsR~G~~A~H~~~-----~~ie 91 (415)
T KOG2105|consen 24 FKTLVVSCEPTKN---KKGEIEGYEIELQDTILFPEGGGQPSDSGFLK----IVEVSHVSRFGLHAKHHVN-----DYIE 91 (415)
T ss_pred ccccccccccccC---CcceeecceeeeeeeEeccCCCCCCCcccccc----ceeEEEeeccccchhhccC-----CCCC
Confidence 4455666643221 01122467899999999999999999999994 5779999888877777654 6799
Q ss_pred CCCEEEEEEehhhhhhhhhhchHHHHHHHHHHHHhCCccccccccccCCceE--EEecCCCCCCHHHHHHHHHHHHHHHH
Q 001826 625 VGEEVICKVDYDRRKLIAPNHTCTHMLNFALREVLGDHVDQKGSVVLPEKLR--FDFSHGKPVDPEHLRRIESIVNEQIK 702 (1009)
Q Consensus 625 ~G~~V~~~ID~~rR~~~m~~HTAtHLL~aAL~~vlg~~v~q~Gs~v~~d~~r--~Df~~~~~lt~e~L~~IE~~~NeiI~ 702 (1009)
+|.+|...|||+||+++||+||++|||.+++.++|.-.+ ..+.++ +|+ +.... .++|.|++..||+.+|+.|.
T Consensus 92 PGt~V~V~VD~qkR~D~MQQHsGQHLitAvad~~fKlkT--tSWelG--~~~sa~e~~~-~~mTaeqvaaieqsvNe~I~ 166 (415)
T KOG2105|consen 92 PGTTVEVAVDEQKRMDYMQQHSGQHLITAVADHLFKLKT--TSWELG--RFRSAIELDT-PSMTAEQVAAIEQSVNEKIR 166 (415)
T ss_pred CCCeEEEEecHHHHhHHHHHhcchhHHHHHHHhhhccce--eeeecc--ceeeccccCC-CCccHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999987543 222222 333 33333 36999999999999999999
Q ss_pred cCCCEEEEEcCHHH--HhcccCchhhcCCcCCCCEEEEEecccccccccCCCCCcccceeEeeccCCCcccccccccEEE
Q 001826 703 AELDVFSKEATLAE--AKCINGLRAVFGEVYPDPVRVVAIGRKVEDLLADPENKEWLSISAELCGGTHLSNTREAEAFAL 780 (1009)
Q Consensus 703 ~n~pV~~~~~~~eE--A~~~~g~~~~f~e~y~d~VRVV~Ig~~~~~ll~~~~~~~~~~~d~e~CgGTHV~nTgeIg~fkI 780 (1009)
.-+|+.+.+.+.++ ..+..| +.++. .-.+++|+|.|+ +.|.++||||||+||++|+.|+|
T Consensus 167 d~~~~~v~E~sl~d~eVeqVS~-~~~~D-~haG~iRvvnI~----------------~vDSN~CCGTHvs~~Sdl~vI~I 228 (415)
T KOG2105|consen 167 DRLPVNVRELSLDDPEVEQVSG-RGLPD-DHAGPIRVVNIE----------------GVDSNMCCGTHVSNLSDLQVIKI 228 (415)
T ss_pred hccchheeecccCCcchhhccC-CCCcc-cccCceEEEeec----------------CccCCccccccccchhhcceEEE
Confidence 99999998877643 334332 11111 112589999998 57999999999999999999999
Q ss_pred eeeccccCCceEEEEEcchhHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHhhhcCCCCcCCCCHHHHHHHHHHHHHH
Q 001826 781 LSEEGIAKGIRRITAVTTGLAYKAFEAACSLEKEVDDASKIEGSLLEKTVASLKSKVDGAAIPAPKKADIRAKIALLQNQ 860 (1009)
Q Consensus 781 ~~~~~~~~Gv~RI~~vtG~~A~~~~~~~~~~~~~l~~l~~~~~~~i~k~l~~~~~~~~~~~i~~~~~~~l~~~l~~l~~e 860 (1009)
++.++..+|-+-..++.|.+.+.+.+..+..++.+..+++|.. .+..+++.+++++
T Consensus 229 Lgtekg~k~rtN~~f~~GnRV~~~mersh~t~~a~taLLkCga------------------------ed~vEavkk~qns 284 (415)
T KOG2105|consen 229 LGTEKGKKNRTNLIFLSGNRVLKWMERSHGTEKALTALLKCGA------------------------EDHVEAVKKLQNS 284 (415)
T ss_pred eeccccccCccceEEEeccHHHHHHHHhcchHHHHHHHHhcch------------------------HHHHHHHHHHHHH
Confidence 9998888887778889999999999888888888888888742 4677888999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccEEEEEeccCCCHHHHHHHHHHHHhccCCcEEEEEEeC-CCCeEEEEE
Q 001826 861 VRKAQKKVAEENLQKAVKVATETAEAAASNGKPFCISRVEVGLDAAAVREAVLKVIEQKGMPVMVFSTDE-TTNKAVVCA 939 (1009)
Q Consensus 861 lk~l~ke~~~l~~~~a~~~a~~l~~~~~~~~~~~iv~~~~~~~d~~~L~~~a~~l~~~~~~~vvll~~~~-~~~k~~~~~ 939 (1009)
.+.++|..+.+...+|+-.+..+.....-+|. ++.+.. ..+.+.++.+++.+.. ..+++++...+ .+|..++++
T Consensus 285 tk~LqKnn~~~lr~LA~~iahsL~Ns~d~gG~--vi~~~~-e~~sE~~N~ianei~s--~EtlL~~~~~dek~GgLflLa 359 (415)
T KOG2105|consen 285 TKILQKNNLNLLRDLAVHIAHSLRNSPDWGGV--VILHRK-EGDSEFMNIIANEIGS--EETLLFLTVGDEKGGGLFLLA 359 (415)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHhcCcCcCce--EEeehh-hccHHHHHHHhhccCC--eeEEEEEEeeccCCceEEEec
Confidence 99999999999999998888777654433443 334443 3578888877776543 23444444333 345666666
Q ss_pred eeCCCcccccCccHHHHHHHHHhhcCCccCCCCCCCeeeeccCCcc--cccccchhh
Q 001826 940 GVPEKSDQSKQLEVSEWLTAALQPLKGRCGKGKGGLASGQVSGFYM--GYKYKLPKS 994 (1009)
Q Consensus 940 ~v~~~~~~~~~~~A~~~~k~v~~~lgGkGG~Gk~~~AQG~g~~~~~--~~~~~l~~~ 994 (1009)
+.|. +...+...+++.+.|||| ||...+||+.+..+. .+.++|..|
T Consensus 360 ~~~a--------svetLg~rvae~LeG~Ga-~K~Gr~QGKaTkmSrrmea~AlLqDY 407 (415)
T KOG2105|consen 360 GPPA--------SVETLGPRVAEVLEGKGA-GKKGRFQGKATKMSRRMEAQALLQDY 407 (415)
T ss_pred CCch--------hhhhhhHHHHHHhhcCCC-CcCcccccchhhhhHHHHHHHHHHHH
Confidence 5332 345677799999999999 999999999877665 344444333
No 14
>PLN02837 threonine-tRNA ligase
Probab=99.93 E-value=2.2e-25 Score=269.85 Aligned_cols=213 Identities=21% Similarity=0.307 Sum_probs=180.7
Q ss_pred CEEEEEEehhhhhhhhhhchHHHHHHHHHHHHhCCccccccccccCCceEEEecCCCCCCHHHHHHHHHHHHHHHHcCCC
Q 001826 627 EEVICKVDYDRRKLIAPNHTCTHMLNFALREVLGDHVDQKGSVVLPEKLRFDFSHGKPVDPEHLRRIESIVNEQIKAELD 706 (1009)
Q Consensus 627 ~~V~~~ID~~rR~~~m~~HTAtHLL~aAL~~vlg~~v~q~Gs~v~~d~~r~Df~~~~~lt~e~L~~IE~~~NeiI~~n~p 706 (1009)
.+|.+.+|...|...+.+||++|||++|++++||....+.|+. .++++||||+. .++|++++.+||++||++|.+|+|
T Consensus 30 ~~~~~~~~~~~~~~~~~~HSa~HLL~~Av~~l~~~~~~~ig~~-~~~g~y~D~~~-~~lt~edl~~IEk~m~~iI~~n~p 107 (614)
T PLN02837 30 ERVVLPTNESSEKLLKIRHTCAHVMAMAVQKLFPDAKVTIGPW-IENGFYYDFDM-EPLTDKDLKRIKKEMDRIISRNLP 107 (614)
T ss_pred ceEEEEeccChhhHHHHHHHHHHHHHHHHHHHcCCcEEEECCc-cCCCEEEEecC-CCCCHHHHHHHHHHHHHHHHcCCC
Confidence 5899999999999999999999999999999998766677754 56899999997 589999999999999999999999
Q ss_pred EEEEEcCHHHHhcccCc------hhhcCCcCCCCEEEEEecccccccccCCCCCcccceeEeeccCCCccccccc--ccE
Q 001826 707 VFSKEATLAEAKCINGL------RAVFGEVYPDPVRVVAIGRKVEDLLADPENKEWLSISAELCGGTHLSNTREA--EAF 778 (1009)
Q Consensus 707 V~~~~~~~eEA~~~~g~------~~~f~e~y~d~VRVV~Ig~~~~~ll~~~~~~~~~~~d~e~CgGTHV~nTgeI--g~f 778 (1009)
|++.+++++||.+++.- ..++.....+.||+++|| +.+.++|+||||+|||+| +.|
T Consensus 108 I~~~~v~~eEA~~~f~~~~~~~k~~Ll~~~~~~~Iriy~ig----------------~~~~D~c~GpHv~sTg~I~~~~~ 171 (614)
T PLN02837 108 LVREEVSREEAQKRIMAINEPYKLEILEGIKEEPITIYHIG----------------EEWWDLCAGPHVERTGKINKKAV 171 (614)
T ss_pred EEEEEecHHHHHHHHHHcCCchhHHHhccCCCCeEEEEEEC----------------CeEEEecCCCCcccccccccceE
Confidence 99999999999986311 011111113569999998 345788999999999999 999
Q ss_pred EEeeeccc-------cCCceEEEEEcchhHHHHHHHHHHHHHHHHHHhccccchhHHHHHHH--hhh-cCCCCcCCCCHH
Q 001826 779 ALLSEEGI-------AKGIRRITAVTTGLAYKAFEAACSLEKEVDDASKIEGSLLEKTVASL--KSK-VDGAAIPAPKKA 848 (1009)
Q Consensus 779 kI~~~~~~-------~~Gv~RI~~vtG~~A~~~~~~~~~~~~~l~~l~~~~~~~i~k~l~~~--~~~-~~~~~i~~~~~~ 848 (1009)
+|.+.++. +..++||++++++. .++++++++.++++..++|++|+++++.| ... -+|+++|+|+|.
T Consensus 172 kl~~~~g~ywrg~~~~~~l~ri~g~~~~~----~~~l~~~~~~~~e~~~rdH~~lg~~l~lf~~~~~~g~G~~~~~p~G~ 247 (614)
T PLN02837 172 ELESVAGAYWRGDEKNQMLQRIYGTAWES----EEQLKAYLHFKEEAKRRDHRRLGQDLDLFSIQDDAGGGLVFWHPKGA 247 (614)
T ss_pred EEEEeehhhhcccccCcceEEEEEEecCC----HHHHHHHHHHHHHhhhCCHHHHHHHcCCcccCcCcCCcceEEechHH
Confidence 99998874 57899999999995 56789999999999999999999996544 444 379999999999
Q ss_pred HHHHHHHHHHHHH
Q 001826 849 DIRAKIALLQNQV 861 (1009)
Q Consensus 849 ~l~~~l~~l~~el 861 (1009)
.|.++|.++..+.
T Consensus 248 ~l~~~L~~~~~~~ 260 (614)
T PLN02837 248 IVRHIIEDSWKKM 260 (614)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999987544
No 15
>PRK12305 thrS threonyl-tRNA synthetase; Reviewed
Probab=99.91 E-value=6.7e-24 Score=256.36 Aligned_cols=200 Identities=24% Similarity=0.320 Sum_probs=167.9
Q ss_pred hhhhchHHHHHHHHHHHHhCCccccccccccCCceEEEecCCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEcCHHHHhcc
Q 001826 641 IAPNHTCTHMLNFALREVLGDHVDQKGSVVLPEKLRFDFSHGKPVDPEHLRRIESIVNEQIKAELDVFSKEATLAEAKCI 720 (1009)
Q Consensus 641 ~m~~HTAtHLL~aAL~~vlg~~v~q~Gs~v~~d~~r~Df~~~~~lt~e~L~~IE~~~NeiI~~n~pV~~~~~~~eEA~~~ 720 (1009)
.+.+|||+|||++|++++||......| +..++++||||+...++|++++.+||+.||++|++|+||++.+++++||.++
T Consensus 7 ~~~~hS~~hlL~~A~~~~~~~~~~~~~-~~~~~g~~~d~~~~~~it~e~l~~Ie~~m~~lI~~~~pi~~~~v~~eeA~~~ 85 (575)
T PRK12305 7 EVIRHSAAHVLAQAVQELFPDAKLGIG-PPIEDGFYYDFDVPEPFTPEDLKKIEKKMKKIIKRGLPFEREEVSREEAREE 85 (575)
T ss_pred HHHHHHHHHHHHHHHHHHcCCceEEeC-CCcCCeEEEEeeCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEecHHHHHHh
Confidence 468999999999999999986554455 5668999999998778999999999999999999999999999999999987
Q ss_pred cCch----hhcCCcCCCCEEEEEecccccccccCCCCCcccceeEeeccCCCcccccccccEEEeeeccc-------cCC
Q 001826 721 NGLR----AVFGEVYPDPVRVVAIGRKVEDLLADPENKEWLSISAELCGGTHLSNTREAEAFALLSEEGI-------AKG 789 (1009)
Q Consensus 721 ~g~~----~~f~e~y~d~VRVV~Ig~~~~~ll~~~~~~~~~~~d~e~CgGTHV~nTgeIg~fkI~~~~~~-------~~G 789 (1009)
+.-. .++....++.|||++||+ + .++|+||||+|||+||.|+|+++++. +++
T Consensus 86 f~~~~~k~~l~~~~~~~~vri~~ig~----------------~-~d~c~Gthv~~T~~i~~f~i~~~~~~~~~~~~~~~~ 148 (575)
T PRK12305 86 FANEPYKLELIDDIPEEGITIYDNGD----------------F-EDLCRGPHVPNTKFIKAFKLTSVAGAYWRGDEKNPQ 148 (575)
T ss_pred CCcChhHHHhhhhcCCCeEEEEEECC----------------E-EEECCCCCCCCccCCceeEEEEEcceEECCCCCCcc
Confidence 4311 122222334699999983 3 47899999999999999999998554 789
Q ss_pred ceEEEEEcchhHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHh--h-hcCCCCcCCCCHHHHHHHHHHHHHHHH
Q 001826 790 IRRITAVTTGLAYKAFEAACSLEKEVDDASKIEGSLLEKTVASLK--S-KVDGAAIPAPKKADIRAKIALLQNQVR 862 (1009)
Q Consensus 790 v~RI~~vtG~~A~~~~~~~~~~~~~l~~l~~~~~~~i~k~l~~~~--~-~~~~~~i~~~~~~~l~~~l~~l~~elk 862 (1009)
++||++++.+.. +++++++++++++.+++|++|++++..|. . ..+|++.|+|++..+++.|+++..+.-
T Consensus 149 l~Ri~g~~~~~~----~~l~~~~~~~~e~~~~dh~~l~~~~~l~~~~~~~~~G~~~~~p~~~~~~~~l~~~~~~~~ 220 (575)
T PRK12305 149 LQRIYGTAWETK----EELKEYLKRLEEAKKRDHRKLGKELDLFSFPDEIGPGLPVWHPKGAIIRREIEDYLRKEH 220 (575)
T ss_pred eEEEEEEecCCH----HHHHHHHHHHHHhhhccHHHHHHhcCccccccccCCcceEEeccHHHHHHHHHHHHHHHH
Confidence 999999999854 56888999999999999999999977654 2 358999999999999999988876554
No 16
>PRK12444 threonyl-tRNA synthetase; Reviewed
Probab=99.90 E-value=7.9e-23 Score=249.61 Aligned_cols=202 Identities=22% Similarity=0.309 Sum_probs=169.8
Q ss_pred hhhhhchHHHHHHHHHHHHhCCccccccccccCCceEEEecCCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEcCHHHHhc
Q 001826 640 LIAPNHTCTHMLNFALREVLGDHVDQKGSVVLPEKLRFDFSHGKPVDPEHLRRIESIVNEQIKAELDVFSKEATLAEAKC 719 (1009)
Q Consensus 640 ~~m~~HTAtHLL~aAL~~vlg~~v~q~Gs~v~~d~~r~Df~~~~~lt~e~L~~IE~~~NeiI~~n~pV~~~~~~~eEA~~ 719 (1009)
..+.+||++|||.+|++++||......| +..++++||||+...++|++++.+||++||++|.+|+||+..+++++||.+
T Consensus 72 ~~iy~hS~~hlL~~A~~~~~~~~~~~i~-~~~~~g~y~d~~~~~~it~edl~~Ie~~m~eiI~~~~pI~~~~v~~eeA~~ 150 (639)
T PRK12444 72 VEIARHSAAHILAQAVKRLYGDVNLGVG-PVIENGFYYDMDLPSSVNVEDLRKIEKEMKKIINENIKIERVEVSREEAAK 150 (639)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCcEEEeC-CcCCCeEEEEEeCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEecHHHHHH
Confidence 3567999999999999999998655566 455899999999877899999999999999999999999999999999998
Q ss_pred ccCch------hhcCCcC-CCCEEEEEecccccccccCCCCCcccceeEeeccCCCcccccccccEEEeeeccc------
Q 001826 720 INGLR------AVFGEVY-PDPVRVVAIGRKVEDLLADPENKEWLSISAELCGGTHLSNTREAEAFALLSEEGI------ 786 (1009)
Q Consensus 720 ~~g~~------~~f~e~y-~d~VRVV~Ig~~~~~ll~~~~~~~~~~~d~e~CgGTHV~nTgeIg~fkI~~~~~~------ 786 (1009)
++.-. .++.... .+.|+++++++ ..++|+||||+|||+|+.|+|+++++.
T Consensus 151 ~F~~~~~~~K~~ll~~~~~~~~v~iy~~~~-----------------~~D~c~G~hv~sTg~ik~f~l~~~~~g~~~g~~ 213 (639)
T PRK12444 151 LFQEMNDRLKLELLEAIPSGESITLYKQGE-----------------FVDLCRGPHLPSTGYLKAFQLTHVSGAYWRGDS 213 (639)
T ss_pred HHhhcCCchHHHHHhcCCCCCeEEEEEECC-----------------EEEEcCCcCCCCCCCCceeEEEEEcceEEcCCC
Confidence 74311 1221111 14589999973 467899999999999999999998876
Q ss_pred -cCCceEEEEEcchhHHHHHHHHHHHHHHHHHHhccccchhHHHHH--HHhhhcCCCCcCCCCHHHHHHHHHHHHHHHHH
Q 001826 787 -AKGIRRITAVTTGLAYKAFEAACSLEKEVDDASKIEGSLLEKTVA--SLKSKVDGAAIPAPKKADIRAKIALLQNQVRK 863 (1009)
Q Consensus 787 -~~Gv~RI~~vtG~~A~~~~~~~~~~~~~l~~l~~~~~~~i~k~l~--~~~~~~~~~~i~~~~~~~l~~~l~~l~~elk~ 863 (1009)
+++++||+++|.+. .++++++++.++++.+++|++|++++. .+.+..+|+++|+|.+..+.+.|+++..+.-.
T Consensus 214 ~~~~l~Ri~g~a~~~----~~~l~~~~~~~~~~~~~dH~~l~~~~~l~~~~~~~~G~~~~~p~g~~~~~~i~~~~~~~~~ 289 (639)
T PRK12444 214 NNQVLQRIYGVAFSS----QKELEEYLHFVEEAAKRNHRKLGKELELFMFSEEAPGMPFYLPKGQIIRNELEAFLREIQK 289 (639)
T ss_pred CCcceEEEEEEecCC----HHHHHHHHHHHHHhccCCHHHHHHHcCCcccccccCcceEEeeCHHHHHHHHHHHHHHHHH
Confidence 68999999999984 467889999999999999999999966 56667899999999999999988877665443
No 17
>PRK00413 thrS threonyl-tRNA synthetase; Reviewed
Probab=99.89 E-value=1.4e-22 Score=247.79 Aligned_cols=220 Identities=21% Similarity=0.291 Sum_probs=182.8
Q ss_pred ccCCCCCEEEEEEehhhhhhhhhhchHHHHHHHHHHHHhCCccccccccccCCceEEEecCCCCCCHHHHHHHHHHHHHH
Q 001826 621 GRFSVGEEVICKVDYDRRKLIAPNHTCTHMLNFALREVLGDHVDQKGSVVLPEKLRFDFSHGKPVDPEHLRRIESIVNEQ 700 (1009)
Q Consensus 621 ~~l~~G~~V~~~ID~~rR~~~m~~HTAtHLL~aAL~~vlg~~v~q~Gs~v~~d~~r~Df~~~~~lt~e~L~~IE~~~Nei 700 (1009)
..+..+..|+..-..+.+-..+.+||++|||++|++++||......| +..++++||||+...++|++++.+||++||++
T Consensus 49 ~~l~~d~~Vefi~~~~~~g~~~y~hS~~hll~~A~~~~~~~~~~~~~-~~~~~g~y~d~~~~~~lt~e~l~~Ie~~m~~i 127 (638)
T PRK00413 49 TPIEEDASLEIITAKDEEGLEIIRHSAAHLLAQAVKRLYPDAKLTIG-PVIENGFYYDFDRERPFTPEDLEAIEKEMKEI 127 (638)
T ss_pred ccccCCCceeeeeccchhhHHHHhhhHHHHHHHHHHHHcCCceEEEC-CccCCeEEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 35666778888888888888899999999999999999986544445 56689999999987789999999999999999
Q ss_pred HHcCCCEEEEEcCHHHHhcccCch------hhcCCcCC-CCEEEEEecccccccccCCCCCcccceeEeeccCCCccccc
Q 001826 701 IKAELDVFSKEATLAEAKCINGLR------AVFGEVYP-DPVRVVAIGRKVEDLLADPENKEWLSISAELCGGTHLSNTR 773 (1009)
Q Consensus 701 I~~n~pV~~~~~~~eEA~~~~g~~------~~f~e~y~-d~VRVV~Ig~~~~~ll~~~~~~~~~~~d~e~CgGTHV~nTg 773 (1009)
|++|+||+..+++++||.+++.-. .++..... +.||++++++ + .++|+||||+|||
T Consensus 128 I~~~~pi~~~~v~~~eA~~~f~~~~~~~k~~ll~~~~~~~~v~iy~~~~----------------~-~d~c~G~hv~~Tg 190 (638)
T PRK00413 128 IKENYPIEREVVSREEAIELFKDRGEPYKVELIEEIPEDEEISLYRQGE----------------F-VDLCRGPHVPSTG 190 (638)
T ss_pred HhcCCCEEEEEecHHHHHHHHHhcCCccHHHHhhcCCCCCeEEEEEECC----------------E-EEECCCCCCCccc
Confidence 999999999999999999864221 11111112 3789999983 3 5789999999999
Q ss_pred ccccEEEeeeccc-------cCCceEEEEEcchhHHHHHHHHHHHHHHHHHHhccccchhHHHHHH--HhhhcCCCCcCC
Q 001826 774 EAEAFALLSEEGI-------AKGIRRITAVTTGLAYKAFEAACSLEKEVDDASKIEGSLLEKTVAS--LKSKVDGAAIPA 844 (1009)
Q Consensus 774 eIg~fkI~~~~~~-------~~Gv~RI~~vtG~~A~~~~~~~~~~~~~l~~l~~~~~~~i~k~l~~--~~~~~~~~~i~~ 844 (1009)
+||.|+|+++++. +++++||++++.+.. +++.++++.++++..++|+.+++++.. |.+..+|+..|+
T Consensus 191 ~i~~f~i~~~~~g~~l~~~~~~~l~Ri~g~~~~~~----~~l~~~~~~~~e~~~~~h~~l~~~~~~~~~~~~~~G~~~~l 266 (638)
T PRK00413 191 KIKAFKLLKVAGAYWRGDSKNKMLQRIYGTAFADK----KELDAYLHRLEEAKKRDHRKLGKELDLFHFQEEAPGLPFWH 266 (638)
T ss_pred CCceeEEEEEcceEEcCCCcchheEEEEeeecCCH----HHHHHHHHHHHHhccccHHHHHHhcCEEEecCCCCcceEEc
Confidence 9999999998654 789999999999854 567888999999999999999999764 566779999999
Q ss_pred CCHHHHHHHHHHHHHHHH
Q 001826 845 PKKADIRAKIALLQNQVR 862 (1009)
Q Consensus 845 ~~~~~l~~~l~~l~~elk 862 (1009)
|.+..+++.|+++.++.-
T Consensus 267 p~~~~~~~~i~~~~~~~~ 284 (638)
T PRK00413 267 PKGWTIRRELERYIRRKL 284 (638)
T ss_pred ccHHHHHHHHHHHHHHHH
Confidence 999999998888766543
No 18
>PLN02908 threonyl-tRNA synthetase
Probab=99.85 E-value=1.4e-20 Score=230.87 Aligned_cols=202 Identities=20% Similarity=0.250 Sum_probs=166.6
Q ss_pred hhhhhhhchHHHHHHHHHHHHhCCccccccccccC-CceEEEecCC-CCCCHHHHHHHHHHHHHHHHcCCCEEEEEcCHH
Q 001826 638 RKLIAPNHTCTHMLNFALREVLGDHVDQKGSVVLP-EKLRFDFSHG-KPVDPEHLRRIESIVNEQIKAELDVFSKEATLA 715 (1009)
Q Consensus 638 R~~~m~~HTAtHLL~aAL~~vlg~~v~q~Gs~v~~-d~~r~Df~~~-~~lt~e~L~~IE~~~NeiI~~n~pV~~~~~~~e 715 (1009)
--.-+.+||++|||.+|++++||.. ...|..+.+ +++||||... .++|++++..||+.|+++|++++||+..+++++
T Consensus 117 eg~~~y~hS~ahlL~~A~~~~~~~~-l~ig~~i~~~~Gfy~d~~~~~~~~t~edl~~Ie~~m~~iI~~~~pi~r~~v~~e 195 (686)
T PLN02908 117 EGRDTFWHSSAHILGEALELEYGCK-LCIGPCTTRGEGFYYDAFYGDRTLNEEDFKPIEARAEKAVKEKQPFERIEVTRE 195 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCe-EEecCccccCCcEEEEeecCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEEcHH
Confidence 3456789999999999999999754 346755543 8999998743 579999999999999999999999999999999
Q ss_pred HHhcccCch----hhcCCcCC--CCEEEEEecccccccccCCCCCcccceeEeeccCCCcccccccccEEEeeeccc---
Q 001826 716 EAKCINGLR----AVFGEVYP--DPVRVVAIGRKVEDLLADPENKEWLSISAELCGGTHLSNTREAEAFALLSEEGI--- 786 (1009)
Q Consensus 716 EA~~~~g~~----~~f~e~y~--d~VRVV~Ig~~~~~ll~~~~~~~~~~~d~e~CgGTHV~nTgeIg~fkI~~~~~~--- 786 (1009)
||.+++.-. .++.. .+ +.++|+++|+ .+++|+||||+|||+|+.|+|++.++.
T Consensus 196 eA~e~F~~~~~K~~ll~~-~~~~~~v~vY~~g~-----------------~~D~c~Gphv~sTg~ik~f~l~~~~~~~~l 257 (686)
T PLN02908 196 EALEMFSENKFKVEIIND-LPEDATITVYRCGP-----------------LVDLCRGPHIPNTSFVKAFACLKASSAYWR 257 (686)
T ss_pred HHHHHHhhCCcHHHHHhh-CCCCCeeEEEEECC-----------------EEEecCCCCCCCCCccceeEEEEecceEEc
Confidence 999864211 11211 22 3588888873 367799999999999999999998754
Q ss_pred ----cCCceEEEEEcchhHHHHHHHHHHHHHHHHHHhccccchhHHHH--HHHhhhcCCCCcCCCCHHHHHHHHHHHHHH
Q 001826 787 ----AKGIRRITAVTTGLAYKAFEAACSLEKEVDDASKIEGSLLEKTV--ASLKSKVDGAAIPAPKKADIRAKIALLQNQ 860 (1009)
Q Consensus 787 ----~~Gv~RI~~vtG~~A~~~~~~~~~~~~~l~~l~~~~~~~i~k~l--~~~~~~~~~~~i~~~~~~~l~~~l~~l~~e 860 (1009)
+..++||++++++.. ++++++++.++++.+++|++|++++ ..|.+..+|+++|+|.+..+++.|.++.++
T Consensus 258 g~~~~~~lqRi~G~sfp~~----~~l~~~~~~~~e~~~rdH~~lg~~~~lf~~~~~~~G~~~~lP~g~~i~~~l~~~~~~ 333 (686)
T PLN02908 258 GDVDRESLQRVYGISFPDK----KLLKEYKHRIEEAKKRDHRLLGQKQELFFFHELSPGSCFFLPHGARIYNKLMDFIRE 333 (686)
T ss_pred CCCcchhhEEEeeeccCCh----HHHHHHHhhhhhccccCHHHHHHhcCCeeecCCCCcceEEechHHHHHHHHHHHHHH
Confidence 568999999999964 5688899999999999999999985 456677799999999999999999988765
Q ss_pred HH
Q 001826 861 VR 862 (1009)
Q Consensus 861 lk 862 (1009)
.-
T Consensus 334 ~~ 335 (686)
T PLN02908 334 QY 335 (686)
T ss_pred HH
Confidence 54
No 19
>TIGR00418 thrS threonyl-tRNA synthetase. This model represents the threonyl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. Note that B. subtilis has closely related isozymes thrS and thrZ. The N-terminal regions are quite dissimilar between archaeal and eubacterial forms, while some eukaryotic forms are missing sequence there altogether..
Probab=99.85 E-value=1.1e-20 Score=228.12 Aligned_cols=198 Identities=24% Similarity=0.271 Sum_probs=167.0
Q ss_pred hchHHHHHHHHHHHHhCCccccccccccCCceEEEecCCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEcCHHHHhcccCc
Q 001826 644 NHTCTHMLNFALREVLGDHVDQKGSVVLPEKLRFDFSHGKPVDPEHLRRIESIVNEQIKAELDVFSKEATLAEAKCINGL 723 (1009)
Q Consensus 644 ~HTAtHLL~aAL~~vlg~~v~q~Gs~v~~d~~r~Df~~~~~lt~e~L~~IE~~~NeiI~~n~pV~~~~~~~eEA~~~~g~ 723 (1009)
+||++|||++|+++++|....+.|+.+ ++++||||+...++|++++.+||+.||++|.+++||+...++++||.++...
T Consensus 1 ~HS~~hLl~~Al~~~~~~~~~~~~~~i-~~g~~~df~~~~~~t~eel~~Ie~~m~~lI~~~~pi~~~~~~~eeA~~~f~~ 79 (563)
T TIGR00418 1 RHSIAHLLAEALKQLYPDVKLAIGPVV-EDGFYYDFELDRSFTQEDLEKIEKDMKEIAKKNYPVAKLSVSLEEALEAFKV 79 (563)
T ss_pred CChHHHHHHHHHHHHcCCcEEEEcCCc-CCCceecccCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEECHHHHHHHHhc
Confidence 699999999999999998767788655 6789999998778999999999999999999999999999999999987430
Q ss_pred -----hhhcCCc-CCCCEEEEEecccccccccCCCCCcccceeEeeccCCCcccccccccEEEeeeccc-------cCCc
Q 001826 724 -----RAVFGEV-YPDPVRVVAIGRKVEDLLADPENKEWLSISAELCGGTHLSNTREAEAFALLSEEGI-------AKGI 790 (1009)
Q Consensus 724 -----~~~f~e~-y~d~VRVV~Ig~~~~~ll~~~~~~~~~~~d~e~CgGTHV~nTgeIg~fkI~~~~~~-------~~Gv 790 (1009)
..++++. +.+.|+++.++ +++.++|+||||+|||.|+.|+|.++.+. ++.+
T Consensus 80 ~~~~k~~Ll~~~~~~~~v~vy~~g----------------~~~~d~~~G~~v~~Tg~i~~f~l~~~~~g~~l~~~~~~~l 143 (563)
T TIGR00418 80 LEPYKLELLDEIPNGVKRTPYGWG----------------KAFVDLCKGPHLPNTSFIKAFKLEKVAGAYWRGDSKNKML 143 (563)
T ss_pred cChhHHHHHhcCCCCCeEEEEEeC----------------CEEEEEcCCCcCCCCCCCceeEEEEeccceEeEcCCCCce
Confidence 0122221 34679999998 45789999999999999999999987664 5689
Q ss_pred eEEEEEcchhHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHhhh---cCCCCcCCCCHHHHHHHHHHHHHHHH
Q 001826 791 RRITAVTTGLAYKAFEAACSLEKEVDDASKIEGSLLEKTVASLKSK---VDGAAIPAPKKADIRAKIALLQNQVR 862 (1009)
Q Consensus 791 ~RI~~vtG~~A~~~~~~~~~~~~~l~~l~~~~~~~i~k~l~~~~~~---~~~~~i~~~~~~~l~~~l~~l~~elk 862 (1009)
+||++++.+. .+.++++++.++++..++|++|++++..|.-. .+|...|+|.+..+.+.|+++.++.-
T Consensus 144 ~Ri~g~~~~~----~~~l~~~~~~~~~~~~~dH~~l~~~~~l~~~~~~~~~G~~~~~p~g~~~~~~i~~~~~~~~ 214 (563)
T TIGR00418 144 QRIYGTAWAD----KKQLAAYLLRLEEAKKRDHRKLGKELELFSFEPEIGPGLPFWLPKGATIRNLLEDFVRQKQ 214 (563)
T ss_pred EeeeeccCCC----HHHHHHHHHhhhhhhcCCHHHHHHhCCCcccCcccCCcceEEeccHHHHHHHHHHHHHHHH
Confidence 9999999885 45688899999999999999999997655322 58999999999999999988876554
No 20
>COG0441 ThrS Threonyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.79 E-value=7.3e-19 Score=208.56 Aligned_cols=197 Identities=25% Similarity=0.330 Sum_probs=160.8
Q ss_pred hhhhhchHHHHHHHHHHHHhCCccccccccccCCceEEEecCCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEcCHHHHhc
Q 001826 640 LIAPNHTCTHMLNFALREVLGDHVDQKGSVVLPEKLRFDFSHGKPVDPEHLRRIESIVNEQIKAELDVFSKEATLAEAKC 719 (1009)
Q Consensus 640 ~~m~~HTAtHLL~aAL~~vlg~~v~q~Gs~v~~d~~r~Df~~~~~lt~e~L~~IE~~~NeiI~~n~pV~~~~~~~eEA~~ 719 (1009)
.-..+||++|+|..|++++++. ...| .+.+++||+||....++|++++.+||+.|+++|.++++|+...+++++|++
T Consensus 26 ~~~~rhs~ah~l~~av~~l~p~--~~~g-p~ie~gfyyd~~~~~~~~~~dl~~ie~~m~~i~~~~~~~~~~~~~~e~a~~ 102 (589)
T COG0441 26 LEIIRHSCAHVLAQAVKRLYPD--VTIG-PVIEEGFYYDFDVKEPITPEDLLKIEKEMKEIAKENLPIEREVVSREEARA 102 (589)
T ss_pred hhhhhhHHHHHHHHHHHHhCCC--cccc-CcccceeEEeeccCCCCCHHHHHHHHHHHHHHHHhcCceEEEEecHHHHHH
Confidence 4457899999999999999998 5678 678899999999888899999999999999999999999999999999998
Q ss_pred ccCchhhc-CCcCCCCEEEEEecccccccccCCCCCcccceeEeeccCCCcccccccccEEEeeeccc-------cCCce
Q 001826 720 INGLRAVF-GEVYPDPVRVVAIGRKVEDLLADPENKEWLSISAELCGGTHLSNTREAEAFALLSEEGI-------AKGIR 791 (1009)
Q Consensus 720 ~~g~~~~f-~e~y~d~VRVV~Ig~~~~~ll~~~~~~~~~~~d~e~CgGTHV~nTgeIg~fkI~~~~~~-------~~Gv~ 791 (1009)
.++--+.+ =+..++++.+.+-+ ...++|-||||+|||.| .|++++.++. ++.++
T Consensus 103 ~f~~yK~~~i~~~~~~~s~y~~~-----------------~~~dlc~gph~~~t~~i-~fkl~~~~~ayw~g~~~~~~l~ 164 (589)
T COG0441 103 PFGPYKAELIDCKGHPLSEYSQG-----------------EFVDLCRGPHVPSTGKI-AFKLLKLAGAYWRGDENNEMLQ 164 (589)
T ss_pred HhhhhHHHHHhcCCCCceeEecC-----------------ccccccCCCCCCccceE-EEEEEEecchhhccCCCCccee
Confidence 74310000 00011223332222 25899999999999999 9999988765 67899
Q ss_pred EEEEEcchhHHHHHHHHHHHHHHHHHHhccccchhHHHHHHH--h-hhcCCCCcCCCCHHHHHHHHHHHHHHH
Q 001826 792 RITAVTTGLAYKAFEAACSLEKEVDDASKIEGSLLEKTVASL--K-SKVDGAAIPAPKKADIRAKIALLQNQV 861 (1009)
Q Consensus 792 RI~~vtG~~A~~~~~~~~~~~~~l~~l~~~~~~~i~k~l~~~--~-~~~~~~~i~~~~~~~l~~~l~~l~~el 861 (1009)
||+++++. ...+++.+++++++..++||++++++++.| . +.-+|+++|+|+|..+++.++++.+..
T Consensus 165 riygta~~----~~~~l~~~l~~~eea~krdHrklg~el~LF~~~~~~~~G~~~~~pkG~~ir~~le~y~~~~ 233 (589)
T COG0441 165 RIYGTAFA----DKKELEAYLKRLEEAKKRDHRKLGKELDLFSFSPEEGPGLPFWHPKGATIRNLLEDYVRTK 233 (589)
T ss_pred EEeccccC----CHHHHHHHHhhhhhccCCchHhHHHhhcceeeccccCCcceEECCCcccHHHHHHHHHHHH
Confidence 99999995 456688899999999999999999997665 4 245999999999999999999987654
No 21
>PF07973 tRNA_SAD: Threonyl and Alanyl tRNA synthetase second additional domain; InterPro: IPR012947 The catalytically active form of threonyl/alanyl tRNA synthetase is a dimer. Within the tRNA synthetase class II dimer, the bound tRNA interacts with both monomers making specific interactions with the catalytic domain, the C-terminal domain, and this SAD domain (the second additional domain). The second additional domain is comprised of a pair of perpendicularly orientated antiparallel beta sheets, of four and three strands, respectively, that surround a central alpha helix that forms the core of the domain [].; GO: 0005524 ATP binding, 0016876 ligase activity, forming aminoacyl-tRNA and related compounds, 0043039 tRNA aminoacylation, 0005737 cytoplasm; PDB: 3KEW_A 1TKE_A 1TKG_A 1TJE_A 1QF6_A 1TKY_A 1NYQ_B 1NYR_A 2ZTG_A 2ZZF_A ....
Probab=99.30 E-value=2.7e-12 Score=102.97 Aligned_cols=44 Identities=52% Similarity=0.869 Sum_probs=37.5
Q ss_pred EEEEEecccccccccCCCCCcccceeEeeccCCCcccccccccEEEeeeccccCCceEEE
Q 001826 735 VRVVAIGRKVEDLLADPENKEWLSISAELCGGTHLSNTREAEAFALLSEEGIAKGIRRIT 794 (1009)
Q Consensus 735 VRVV~Ig~~~~~ll~~~~~~~~~~~d~e~CgGTHV~nTgeIg~fkI~~~~~~~~Gv~RI~ 794 (1009)
||||+|+ +++.++||||||+||++||.|+|++.++.++|++|||
T Consensus 1 vRvv~i~----------------~~~~~~C~GtHv~~T~~i~~~~i~~~~~~~~~~~RI~ 44 (44)
T PF07973_consen 1 VRVVRIG----------------DFDVDLCGGTHVPNTGEIGHFKILKGESKGKGLRRIY 44 (44)
T ss_dssp EEEEEET----------------TTEEEEESS---SBGGGG-CEEEEEEEEEETTEEEEE
T ss_pred CEEEEEC----------------CeeEECCCCcccCChhEECcEEEEEeEEEcCCcEEeC
Confidence 6999998 4799999999999999999999999999999999997
No 22
>PRK14799 thrS threonyl-tRNA synthetase; Provisional
Probab=99.06 E-value=3.3e-10 Score=135.70 Aligned_cols=100 Identities=14% Similarity=0.180 Sum_probs=87.8
Q ss_pred eeEeeccC-CCcccccccccEEEeeeccc----cCCceEEEEEcchhHHHHHHHHHHHHHHHHHHhccccchhHHHHHHH
Q 001826 759 ISAELCGG-THLSNTREAEAFALLSEEGI----AKGIRRITAVTTGLAYKAFEAACSLEKEVDDASKIEGSLLEKTVASL 833 (1009)
Q Consensus 759 ~d~e~CgG-THV~nTgeIg~fkI~~~~~~----~~Gv~RI~~vtG~~A~~~~~~~~~~~~~l~~l~~~~~~~i~k~l~~~ 833 (1009)
..+++|.| |||+|||.|+.|+|++.++. ++.++||++++++. .++++++++.++++.++||++|+++++.|
T Consensus 75 ~~~~~~~~~ph~~~t~~~~~fkl~~~~~~g~~~~~~l~Riyg~~f~~----~~~l~~~~~~~eea~~rdHr~lg~~l~lf 150 (545)
T PRK14799 75 NKVSIIEDKVSISTNLNPKYFEILNISTHHPNPNEQYVRIRGVAFET----EEQLKDYLTWLEKAEETDHRLIGEKLDLF 150 (545)
T ss_pred CceeecCCCCCCCCCCCcceEEEEEeccCCCccCceeEEEEEeecCC----HHHHHHHHHHHHhcccCCHHHHHHHcCCc
Confidence 46889999 99999999999999999886 47899999999994 56789999999999999999999997654
Q ss_pred --hhh-cCCCCcCCCCHHHHHHHHHHHHHHHH
Q 001826 834 --KSK-VDGAAIPAPKKADIRAKIALLQNQVR 862 (1009)
Q Consensus 834 --~~~-~~~~~i~~~~~~~l~~~l~~l~~elk 862 (1009)
.+. .+|+++|+|++..+++.|.++.++.-
T Consensus 151 ~~~~~~~~G~~~~lP~G~~i~~~L~~~~r~~~ 182 (545)
T PRK14799 151 SFHEEAGSGLVLFHPKGQTIRNELIAFMREIN 182 (545)
T ss_pred ccccccCCcceEEcChHHHHHHHHHHHHHHHH
Confidence 433 58999999999999999998876543
No 23
>smart00863 tRNA_SAD Threonyl and Alanyl tRNA synthetase second additional domain. The catalytically active form of threonyl/alanyl tRNA synthetase is a dimer. Within the tRNA synthetase class II dimer, the bound tRNA interacts with both monomers making specific interactions with the catalytic domain, the C-terminal domain, and this SAD domain (the second additional domain). The second additional domain is comprised of a pair of perpendicularly orientated antiparallel beta sheets, of four and three strands, respectively, that surround a central alpha helix that forms the core of the domain.
Probab=98.99 E-value=3.7e-10 Score=90.43 Aligned_cols=44 Identities=55% Similarity=0.857 Sum_probs=40.1
Q ss_pred EEEEEecccccccccCCCCCcccceeEeeccCCCcccccccccEEEeeeccccCCceEEE
Q 001826 735 VRVVAIGRKVEDLLADPENKEWLSISAELCGGTHLSNTREAEAFALLSEEGIAKGIRRIT 794 (1009)
Q Consensus 735 VRVV~Ig~~~~~ll~~~~~~~~~~~d~e~CgGTHV~nTgeIg~fkI~~~~~~~~Gv~RI~ 794 (1009)
+|+|+|+ +++.++|+||||+||++||.|+|++.++...+++||+
T Consensus 1 vriv~i~----------------~~~~~~C~GtHv~~t~~I~~i~i~~~~~~~~~~~Ri~ 44 (44)
T smart00863 1 VRVVSIG----------------DFDVELCGGTHVPNTGEIGAFKILSVSGAYWGLQRIY 44 (44)
T ss_pred CEEEEEC----------------CEEEECCCCcccCChhhCcEEEEEEEeeeecCeEEeC
Confidence 5889998 5789999999999999999999999998888888984
No 24
>KOG1637 consensus Threonyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=98.88 E-value=1.2e-09 Score=123.55 Aligned_cols=135 Identities=19% Similarity=0.240 Sum_probs=103.6
Q ss_pred hhhchHHHHHHHHHHHHhCCccccccccccCCceEEEecCCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEcCHHHHhccc
Q 001826 642 APNHTCTHMLNFALREVLGDHVDQKGSVVLPEKLRFDFSHGKPVDPEHLRRIESIVNEQIKAELDVFSKEATLAEAKCIN 721 (1009)
Q Consensus 642 m~~HTAtHLL~aAL~~vlg~~v~q~Gs~v~~d~~r~Df~~~~~lt~e~L~~IE~~~NeiI~~n~pV~~~~~~~eEA~~~~ 721 (1009)
..+||++|+|..|+.+.+|.+. ..|. -.+++||+|+ + ..++.+++..||
T Consensus 68 vfwhssahvlg~a~e~~~g~~l-c~Gp-p~~~gf~yd~-~-~~i~~~d~~~~e--------------------------- 116 (560)
T KOG1637|consen 68 VFWHSSAHVLGEALEQEYGAHL-CIGP-PIEEGFYYDM-L-DEISSNDFPSIE--------------------------- 116 (560)
T ss_pred eeeehhhhHhhHHHHHhcCeeE-eeCC-CCcCceehhh-h-cccccccccccc---------------------------
Confidence 5899999999999999999764 5774 5678999986 3 222221111111
Q ss_pred CchhhcCCcCCCCEEEEEecccccccccCCCCCcccceeEeeccCCCcccccccccEEEeeeccccCCceEEEEEcchhH
Q 001826 722 GLRAVFGEVYPDPVRVVAIGRKVEDLLADPENKEWLSISAELCGGTHLSNTREAEAFALLSEEGIAKGIRRITAVTTGLA 801 (1009)
Q Consensus 722 g~~~~f~e~y~d~VRVV~Ig~~~~~ll~~~~~~~~~~~d~e~CgGTHV~nTgeIg~fkI~~~~~~~~Gv~RI~~vtG~~A 801 (1009)
++||++||.|+.|+|++-++. . -.+-+++
T Consensus 117 --------------------------------------------~phi~~tg~ika~k~~~nss~---y--w~~~sfp-- 145 (560)
T KOG1637|consen 117 --------------------------------------------APHIRHTGKIKAFKILKNSSA---Y--WEGDSFP-- 145 (560)
T ss_pred --------------------------------------------cccccccceeeeeeeeccchh---h--hccccCC--
Confidence 289999999999999987654 0 1112566
Q ss_pred HHHHHHHHHHHHHHHHHhccccchhHHH--HHHHhhhcCCCCcCCCCHHHHHHHHHHHHHH
Q 001826 802 YKAFEAACSLEKEVDDASKIEGSLLEKT--VASLKSKVDGAAIPAPKKADIRAKIALLQNQ 860 (1009)
Q Consensus 802 ~~~~~~~~~~~~~l~~l~~~~~~~i~k~--l~~~~~~~~~~~i~~~~~~~l~~~l~~l~~e 860 (1009)
...+++++.+..+++..++||+|+++ ++.|++..||++||+|+|..++++|-++++.
T Consensus 146 --~~k~~k~~~~~~~Ea~~rdHRkig~~qeLfff~~lSPGS~FflP~G~~iyN~Lv~fir~ 204 (560)
T KOG1637|consen 146 --DPKQLKEWEKFQEEAKKRDHRKIGKEQELFFFHELSPGSCFFLPHGTRIYNTLVDFIRA 204 (560)
T ss_pred --CHHHHHHHHhhchhhhhhhhhhhhhhhhheeeccCCCcceeeccCcchHHHHHHHHHHH
Confidence 34568888999999999999999997 5566788899999999999999999988764
No 25
>PF02272 DHHA1: DHHA1 domain; InterPro: IPR003156 This domain is often found adjacent to the DHH domain, found in the RecJ-like phosphoesterase family IPR001667 from INTERPRO, and is called DHHA1 for DHH associated domain. DHHA1 is diagnostic of DHH subfamily 1 members []. This domain is also found in alanyl tRNA synthetase e.g. P00957 from SWISSPROT, suggesting that it may have an RNA binding function. The domain is about 60 residues long and contains a conserved GG motif.; GO: 0003676 nucleic acid binding; PDB: 1IR6_A 2ZVF_F 3G98_B 3DEV_A 2ZXR_A 2ZXO_A 2ZXP_A.
Probab=97.10 E-value=0.00071 Score=58.94 Aligned_cols=55 Identities=29% Similarity=0.401 Sum_probs=42.9
Q ss_pred cEEEEEEeCCCCeEEEEEeeCCCcccccCccHH-HHHHHHHhhcCCccCCCCCCCeeeeccCCcc
Q 001826 922 PVMVFSTDETTNKAVVCAGVPEKSDQSKQLEVS-EWLTAALQPLKGRCGKGKGGLASGQVSGFYM 985 (1009)
Q Consensus 922 ~vvll~~~~~~~k~~~~~~v~~~~~~~~~~~A~-~~~k~v~~~lgGkGG~Gk~~~AQG~g~~~~~ 985 (1009)
++++++.. ++++.+.+.++++ ++.. +|+++++..++|+|| |++.+|||+++++..
T Consensus 3 ~~i~~~~~--~~~~~~s~rs~~~------~~~~~~~~~~~~~~~~G~GG-Gh~~aAg~~~~~~~~ 58 (68)
T PF02272_consen 3 PVIVFSEE--DGKIKVSARSSKG------VDDKGEILKELAEKLGGKGG-GHPDAAGGSIPKPEK 58 (68)
T ss_dssp EEEEEEEE--SSTEEEEEEESSS------STHH-HHHHHCHHHGTCEEE-EESSEEEEEESCGGH
T ss_pred EEEEEEEc--CCEEEEEEEECCc------hhhHHHHHHHHHHHcCCCCC-CCHHHhcccCCCchh
Confidence 55666633 4677777776543 4555 999999999999999 999999999987774
No 26
>cd00768 class_II_aaRS-like_core Class II tRNA amino-acyl synthetase-like catalytic core domain. Class II amino acyl-tRNA synthetases (aaRS) share a common fold and generally attach an amino acid to the 3' OH of ribose of the appropriate tRNA. PheRS is an exception in that it attaches the amino acid at the 2'-OH group, like class I aaRSs. These enzymes are usually homodimers. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. The substrate specificity of this reaction is further determined by additional domains. Intererestingly, this domain is also found is asparagine synthase A (AsnA), in the accessory subunit of mitochondrial polymerase gamma and in the bacterial ATP phosphoribosyltransferase regulatory subunit HisZ.
Probab=95.95 E-value=0.021 Score=59.75 Aligned_cols=115 Identities=17% Similarity=0.101 Sum_probs=68.9
Q ss_pred hHHHHHHHHhhhhCCCeeecCCCCccCCCCC--------ccccc---ccccccccccc-cccCC--CCcccccccccccc
Q 001826 61 TKVRDTFFKFFEDKNHVNWKSSPVVPVNDPT--------LLFAN---AGMNQYKPIFL-GTADP--NTQLSKLTRACNTQ 126 (1009)
Q Consensus 61 ~eiR~~fl~fF~~~gH~~v~s~slvp~~dpt--------llftn---AGm~qfk~~fl-g~~~p--~~~~~~~~r~~~~Q 126 (1009)
+.+++.+-++|.+.|+..+-++++++..+-. +.+.| ..+..+.|-.+ +.... .|-.....|+...+
T Consensus 3 ~~~~~~~r~~l~~~Gf~Ev~t~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~LR~s~~~~l~~~~~~n~~~~~~~lfeig 82 (211)
T cd00768 3 SKIEQKLRRFMAELGFQEVETPIVEREPLLEKAGHEPKDLLPVGAENEEDLYLRPTLEPGLVRLFVSHIRKLPLRLAEIG 82 (211)
T ss_pred HHHHHHHHHHHHHcCCEEeEcceecHHHHHHHcCccHhheeeeecCCCCEEEECCCCcHHHHHHHHhhcccCCEEEEEEc
Confidence 4678889999999999999999998842210 11111 01111222111 11000 00000124788899
Q ss_pred cccccCCCCCCCCCCCCCCCccccccccccccccccc-----HHHHHHHHHHHcccccCCCC
Q 001826 127 KCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYF-----KNEAIEWAWELLTKVYRLPA 183 (1009)
Q Consensus 127 kCiR~gGkhnDld~VG~t~rH~TfFEMlGn~SfgdYf-----K~eai~~awe~lt~~l~i~~ 183 (1009)
+|+|.. -..-+ .+|..-|.|+|-..+|... -.+++..++++|. .+|++.
T Consensus 83 ~vfr~e-----~~~~~--~~~~~ef~~l~~~~~g~~~~~~~~~~~~~~~~~~~l~-~lg~~~ 136 (211)
T cd00768 83 PAFRNE-----GGRRG--LRRVREFTQLEGEVFGEDGEEASEFEELIELTEELLR-ALGIKL 136 (211)
T ss_pred ceeecC-----CCccc--cccceeEEEcCEEEEcCCchhHHHHHHHHHHHHHHHH-HcCCCc
Confidence 999962 11111 3677889999999999644 3678899999996 578743
No 27
>PRK09348 glyQ glycyl-tRNA synthetase subunit alpha; Validated
Probab=95.37 E-value=0.12 Score=56.03 Aligned_cols=177 Identities=21% Similarity=0.291 Sum_probs=101.7
Q ss_pred CCCChhHHHHHHHHhhhhCCCeeecCCCCccCCCCCcccccccccccccc-cccccCCCCcccccccccccccccccC-C
Q 001826 56 VEWPATKVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFANAGMNQYKPI-FLGTADPNTQLSKLTRACNTQKCIRAG-G 133 (1009)
Q Consensus 56 ~~~~~~eiR~~fl~fF~~~gH~~v~s~slvp~~dptllftnAGm~qfk~~-flg~~~p~~~~~~~~r~~~~QkCiR~g-G 133 (1009)
.+|+-.+|-.+--+|..++|..++-++.+= + |--.|-|. |+..--|. | -+++-+|+|.|.. |
T Consensus 2 ~~~~fQ~iI~~Lq~fWa~~GC~i~qPyD~E---------v--GAGT~~P~Tflr~Lgpe-p----w~vaYvqPsRRP~DG 65 (283)
T PRK09348 2 KKMTFQDIILTLQDYWADQGCVILQPYDME---------V--GAGTFHPATFLRALGPE-P----WNAAYVQPSRRPTDG 65 (283)
T ss_pred CCCcHHHHHHHHHHHHHHCCCEEECCcccc---------c--ccccCCHHHHHHhcCCC-c----cccccccCCCCCCCC
Confidence 468999999999999999999998776542 2 34477884 44332221 1 3789999999973 1
Q ss_pred CCCCCCCCCCCCCcccccccccccccccccHHHHHHHHHHHcccccCCCCCceEEEEECCCCcCCCCCcHHHHHHHHhcC
Q 001826 134 KHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWAWELLTKVYRLPADRLYATYFGGDEKAGLAPDNEARDIWLKFL 213 (1009)
Q Consensus 134 khnDld~VG~t~rH~TfFEMlGn~SfgdYfK~eai~~awe~lt~~l~i~~~rL~vT~~~~~~~~~~~~D~E~~~iW~~~~ 213 (1009)
+.- +|.-+ -.||.=|..+=-=|-.+ ..+.=.+-| +.+|||+..
T Consensus 66 RYG--eNPNR-Lq~y~QfQVilKPsP~n-----iQelYL~SL-~~lGid~~~---------------------------- 108 (283)
T PRK09348 66 RYG--ENPNR-LQHYYQFQVILKPSPDN-----IQELYLGSL-EALGIDPLE---------------------------- 108 (283)
T ss_pred CcC--CCchh-hhhheeeEEEEcCCCcc-----HHHHHHHHH-HHhCCCccc----------------------------
Confidence 111 12222 23444444432222221 111111111 235555543
Q ss_pred CCCCcccCCCCCCcccCCCCCCCcCceeEEeecCCCCCCCCCCCCCCCceEEEeeecccccccCCCCccccCCCCccccc
Q 001826 214 PASRVLPFGCKDNFWEMGDTGPCGPCSEIHYDRTGNRDAASLVNNDDPTCIEIWNIVFIQFNRESDGSLKPLPAKHVDTG 293 (1009)
Q Consensus 214 ~~~~i~~~~~~dNfW~mG~~GpcGPcsEI~yd~~~~~~~~~~~~~~~~r~lEiwNlVFmq~~~~~~g~l~~Lp~~~IDTG 293 (1009)
|=+|| .+|| |+-=.-|--|===|+-.| | +||=-. +=|.+ ..| + ++..-.+.-=
T Consensus 109 ---hDIRF-VEDn-WEsPTLGAwGlGWEVWld---G--------------MEITQF--TYFQQ-vGG-i-~~~pv~~EIT 161 (283)
T PRK09348 109 ---HDIRF-VEDN-WESPTLGAWGLGWEVWLD---G--------------MEVTQF--TYFQQ-VGG-I-ECKPVTGEIT 161 (283)
T ss_pred ---cceeE-eecC-CCCCcccccccceEEEEC---C--------------eeeeee--eeeee-eCC-e-eccccceeee
Confidence 33455 2455 442112555655666654 1 666533 22332 333 3 4555567778
Q ss_pred ccHHHHHHHHcCCCCCccc
Q 001826 294 LGFERLTSILQNKMSNYDT 312 (1009)
Q Consensus 294 mGlERl~~vlqg~~snydt 312 (1009)
+||||||+.+||+.|+||.
T Consensus 162 YGLERiamylQ~vd~v~dl 180 (283)
T PRK09348 162 YGLERLAMYLQGVDNVYDL 180 (283)
T ss_pred hhHHHHHHHHhCCCceeee
Confidence 9999999999999999997
No 28
>TIGR00388 glyQ glycyl-tRNA synthetase, tetrameric type, alpha subunit. This tetrameric form of glycyl-tRNA synthetase (2 alpha, 2 beta) is found in the majority of completed eubacterial genomes, with the two genes fused in a few species. A substantially different homodimeric form (not recognized by this model) replaces this form in the Archaea, animals, yeasts, and some eubacteria.
Probab=94.72 E-value=0.22 Score=54.32 Aligned_cols=173 Identities=20% Similarity=0.285 Sum_probs=98.6
Q ss_pred CChhHHHHHHHHhhhhCCCeeecCCCCccCCCCCcccccccccccccc-cccccCCCCcccccccccccccccccCCCCC
Q 001826 58 WPATKVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFANAGMNQYKPI-FLGTADPNTQLSKLTRACNTQKCIRAGGKHN 136 (1009)
Q Consensus 58 ~~~~eiR~~fl~fF~~~gH~~v~s~slvp~~dptllftnAGm~qfk~~-flg~~~p~~~~~~~~r~~~~QkCiR~gGkhn 136 (1009)
|+-.+|-.+--+|..++|+.++-++.+= + |--.|-|. ||..--|. | -+++-+|+|.|..
T Consensus 1 m~fQ~iI~~Lq~fWa~~GC~i~QPyD~E---------v--GAGT~hPaTflralgpe-p----w~vAYVqPsRRP~---- 60 (293)
T TIGR00388 1 QTFQGLILKLQEYWANQGCLIVQPYDME---------K--GAGTMHPMTFLRSLGPE-P----WAVAYVEPSRRPT---- 60 (293)
T ss_pred CCHHHHHHHHHHHHHHCCCEEEcCcccc---------c--ccccCCHHHHHHhcCCC-c----ceeccccCCCCCC----
Confidence 5778899999999999999998776542 2 34478884 44333221 1 3789999999972
Q ss_pred CC---CCCCCCCCcccccccccccccccccHHHHHHHHHHHcccccCCCCCceEEEEECCCCcCCCCCcHHHHHHHHhcC
Q 001826 137 DL---DDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWAWELLTKVYRLPADRLYATYFGGDEKAGLAPDNEARDIWLKFL 213 (1009)
Q Consensus 137 Dl---d~VG~t~rH~TfFEMlGn~SfgdYfK~eai~~awe~lt~~l~i~~~rL~vT~~~~~~~~~~~~D~E~~~iW~~~~ 213 (1009)
|= +|.-+- .||.=|..+=-=|-.+ ..+.=.+-| +.+||++.
T Consensus 61 DGRYGeNPNRL-q~yyQfQVilKPsP~n-----iQelYL~SL-~~lGid~~----------------------------- 104 (293)
T TIGR00388 61 DGRYGENPNRL-QHYYQFQVVIKPSPDN-----IQELYLDSL-RALGIDPT----------------------------- 104 (293)
T ss_pred CCCCCCCchhh-hheeeeEEEECCCCcc-----HHHHHHHHH-HHhCCCcc-----------------------------
Confidence 31 233332 3444444432222221 111111111 23455553
Q ss_pred CCCCcccCCCCCCcccCCCCCCCcCceeEEeecCCCCCCCCCCCCCCCceEEEeeecccccccCCCCccccCCCCccccc
Q 001826 214 PASRVLPFGCKDNFWEMGDTGPCGPCSEIHYDRTGNRDAASLVNNDDPTCIEIWNIVFIQFNRESDGSLKPLPAKHVDTG 293 (1009)
Q Consensus 214 ~~~~i~~~~~~dNfW~mG~~GpcGPcsEI~yd~~~~~~~~~~~~~~~~r~lEiwNlVFmq~~~~~~g~l~~Lp~~~IDTG 293 (1009)
+|=+|| .+|| |+-=.-|--|===|+-.| | +||=- |+=|.+ ..| + ++..-.+.-=
T Consensus 105 --~hDIRF-VEDn-WEsPTLGAwGlGWEVWld---G--------------MEITQ--FTYFQQ-vGG-i-~~~pv~~EIT 158 (293)
T TIGR00388 105 --EHDIRF-VEDN-WENPTLGAWGLGWEVWLD---G--------------MEVTQ--FTYFQQ-VGG-L-ECKPVSVEIT 158 (293)
T ss_pred --ccCeeE-eecC-CCCCcccccccccEEEEC---C--------------eeeee--eeeeee-eCC-e-eccccceeee
Confidence 333555 3555 442112555655666654 1 56643 333333 333 3 3444456778
Q ss_pred ccHHHHHHHHcCCCCCccc
Q 001826 294 LGFERLTSILQNKMSNYDT 312 (1009)
Q Consensus 294 mGlERl~~vlqg~~snydt 312 (1009)
+||||||+.|||+.|+||.
T Consensus 159 YGLERiaMylQ~vd~v~dl 177 (293)
T TIGR00388 159 YGLERLAMYIQGVENVYDL 177 (293)
T ss_pred hhHHHHHHHHhCCCeeeee
Confidence 9999999999999999997
No 29
>PRK14908 glycyl-tRNA synthetase; Provisional
Probab=93.14 E-value=0.45 Score=61.25 Aligned_cols=176 Identities=20% Similarity=0.306 Sum_probs=104.0
Q ss_pred CCCChhHHHHHHHHhhhhCCCeeecCCCCccCCCCCcccccccccccccc-cccccCC-CCcccccccccccccccccC-
Q 001826 56 VEWPATKVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFANAGMNQYKPI-FLGTADP-NTQLSKLTRACNTQKCIRAG- 132 (1009)
Q Consensus 56 ~~~~~~eiR~~fl~fF~~~gH~~v~s~slvp~~dptllftnAGm~qfk~~-flg~~~p-~~~~~~~~r~~~~QkCiR~g- 132 (1009)
..|+-.+|-.+--+|+.++|+.++-++.+= + |--.|-|. |+..--| | -+++-+|+|.|..
T Consensus 3 ~~~~~q~~i~~l~~~w~~~gc~~~qp~~~e---------~--gagt~~p~t~~~~l~~~~------~~~ayv~p~~rp~d 65 (1000)
T PRK14908 3 QPLTMQDMLLALLRYWSEQGCIIHQGYDLE---------V--GAGTFNPATFLRVLGPEP------WRVAYVEPSRRPDD 65 (1000)
T ss_pred CcccHHHHHHHHHHHHHHCCCEEECCcccc---------c--ccCcCCHHHHHhhcCCCC------CcccccCCCCCCCC
Confidence 358999999999999999999998776542 2 34477784 4433322 2 3689999999972
Q ss_pred CCCCCCCCCCCCCCcccccccccccccccccHHHHHHHHHHHcccccCCCCCceEEEEECCCCcCCCCCcHHHHHHHHhc
Q 001826 133 GKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWAWELLTKVYRLPADRLYATYFGGDEKAGLAPDNEARDIWLKF 212 (1009)
Q Consensus 133 GkhnDld~VG~t~rH~TfFEMlGn~SfgdYfK~eai~~awe~lt~~l~i~~~rL~vT~~~~~~~~~~~~D~E~~~iW~~~ 212 (1009)
|+.- +|.-+ -.||+=|..+=-=|-++ ..+.=.+-| +.+|||+..
T Consensus 66 ~ryg--~npnr-l~~~~q~qvi~kp~p~~-----~q~~yl~sl-~~~gi~~~~--------------------------- 109 (1000)
T PRK14908 66 GRYG--QNPNR-LQTYTQFQVILKPVPGN-----PQELYLESL-KAIGIDLRD--------------------------- 109 (1000)
T ss_pred CCcC--CCchh-hhhheeeEEEECCCCcc-----HHHHHHHHH-HHcCCCccc---------------------------
Confidence 1111 23332 24555566543333332 111111111 246666643
Q ss_pred CCCCCcccCCCCCCcccCCCCCCCcCceeEEeecCCCCCCCCCCCCCCCceEEEeeecccccccCCCCccccCCCCcccc
Q 001826 213 LPASRVLPFGCKDNFWEMGDTGPCGPCSEIHYDRTGNRDAASLVNNDDPTCIEIWNIVFIQFNRESDGSLKPLPAKHVDT 292 (1009)
Q Consensus 213 ~~~~~i~~~~~~dNfW~mG~~GpcGPcsEI~yd~~~~~~~~~~~~~~~~r~lEiwNlVFmq~~~~~~g~l~~Lp~~~IDT 292 (1009)
|=+|| .+|| |+-=.-|--|===|+-.| | +||=-. +=|. ...| + ++..-.+.-
T Consensus 110 ----~dirf-ved~-we~p~lga~glgwevw~~---g--------------meitqf--tyfq-q~gg-~-~~~~~~~ei 161 (1000)
T PRK14908 110 ----HDIRF-VHDD-WENPTIGAWGLGWEVWLD---G--------------MEITQF--TYFQ-QAGG-K-PLDPISGEI 161 (1000)
T ss_pred ----cceeE-eecC-CCCCcccccccccEEEEC---C--------------eeeeee--eeeh-hcCC-e-eccccceee
Confidence 22444 2555 432112555655666654 1 666533 2223 2334 3 455567778
Q ss_pred cccHHHHHHHHcCCCCCccc
Q 001826 293 GLGFERLTSILQNKMSNYDT 312 (1009)
Q Consensus 293 GmGlERl~~vlqg~~snydt 312 (1009)
=+|||||++.|||+.|.||.
T Consensus 162 tygler~~m~~q~~~~~~~~ 181 (1000)
T PRK14908 162 TYGIERIAMYLQKVNHFKDI 181 (1000)
T ss_pred eccHHHHHHHHhCCCeeeee
Confidence 89999999999999999986
No 30
>cd00733 GlyRS_alpha_core Class II Glycyl-tRNA synthetase (GlyRS) alpha subunit core catalytic domain. GlyRS functions as a homodimer in eukaryotes, archaea and some bacteria and as a heterotetramer in the remainder of prokaryotes and in arabidopsis. It is responsible for the attachment of glycine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. This alignment contains only sequences from the GlyRS form which heterotetramerizes. The homodimer form of GlyRS is in a different family of class II aaRS. Class II assignment is based upon structure and the presence of three characteristic sequence motifs.
Probab=92.82 E-value=0.76 Score=50.02 Aligned_cols=173 Identities=21% Similarity=0.338 Sum_probs=96.6
Q ss_pred hhHHHHHHHHhhhhCCCeeecCCCCccCCCCCcccccccccccccc-cccccCCCCcccccccccccccccccC-CCCCC
Q 001826 60 ATKVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFANAGMNQYKPI-FLGTADPNTQLSKLTRACNTQKCIRAG-GKHND 137 (1009)
Q Consensus 60 ~~eiR~~fl~fF~~~gH~~v~s~slvp~~dptllftnAGm~qfk~~-flg~~~p~~~~~~~~r~~~~QkCiR~g-GkhnD 137 (1009)
-.+|-.+--+|..++|+.++-++.+= + |--.|-|. |+..--|. | -+++-+|+|.|.. |+.-
T Consensus 2 fQ~iI~~Lq~fW~~~GC~i~qPyD~E---------v--GAGT~hPaTflr~Lgpe-p----w~vAYVqPsrRP~DGRYG- 64 (279)
T cd00733 2 FQDLILKLQKFWASQGCLIIQPYDME---------V--GAGTFHPATFLRALGPE-P----WNVAYVEPSRRPTDGRYG- 64 (279)
T ss_pred HHHHHHHHHHHHHHCCCEEEcCcccc---------c--ccccCCHHHHHHhcCCC-c----ceeccccCCCCCCCCCcC-
Confidence 35677788899999999998776542 2 34477884 44333221 1 3789999999972 1111
Q ss_pred CCCCCCCCCcccccccccccccccccHHHHHHHHHHHcccccCCCCCceEEEEECCCCcCCCCCcHHHHHHHHhcCCCCC
Q 001826 138 LDDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWAWELLTKVYRLPADRLYATYFGGDEKAGLAPDNEARDIWLKFLPASR 217 (1009)
Q Consensus 138 ld~VG~t~rH~TfFEMlGn~SfgdYfK~eai~~awe~lt~~l~i~~~rL~vT~~~~~~~~~~~~D~E~~~iW~~~~~~~~ 217 (1009)
+|.-+ -.||.=|..+=-=|-.+ ..+.=.+-| +.+|||+.. |
T Consensus 65 -eNPNR-Lq~y~QfQViiKPsP~n-----iQelYL~SL-~~lGid~~~-------------------------------h 105 (279)
T cd00733 65 -ENPNR-LQHYYQFQVIIKPSPDN-----IQELYLESL-EALGINPKE-------------------------------H 105 (279)
T ss_pred -CCchh-hhhheeeEEEECCCCcc-----HHHHHHHHH-HHhCCCccc-------------------------------c
Confidence 22222 23444444432222221 111111112 235555533 3
Q ss_pred cccCCCCCCcccCCCCCCCcCceeEEeecCCCCCCCCCCCCCCCceEEEeeecccccccCCCCccccCCCCcccccccHH
Q 001826 218 VLPFGCKDNFWEMGDTGPCGPCSEIHYDRTGNRDAASLVNNDDPTCIEIWNIVFIQFNRESDGSLKPLPAKHVDTGLGFE 297 (1009)
Q Consensus 218 i~~~~~~dNfW~mG~~GpcGPcsEI~yd~~~~~~~~~~~~~~~~r~lEiwNlVFmq~~~~~~g~l~~Lp~~~IDTGmGlE 297 (1009)
=+|| .+|| |+-=.-|--|===|+-.| | +||=- |+=|.+ ..| + ++..-.+.-=+|||
T Consensus 106 DIRF-VEDn-WEsPTLGAwGLGWEVWld---G--------------MEITQ--FTYFQQ-vGG-i-~~~pv~~EiTYGLE 161 (279)
T cd00733 106 DIRF-VEDN-WESPTLGAWGLGWEVWLD---G--------------MEVTQ--FTYFQQ-VGG-I-PCKPISVEITYGLE 161 (279)
T ss_pred CeeE-eecC-CCCCcccccccccEEEEC---C--------------eeeee--eeeeee-eCC-e-eccccceeeehhHH
Confidence 3455 2455 443122555655666654 1 66653 332332 333 3 45555677789999
Q ss_pred HHHHHHcCCCCCccc
Q 001826 298 RLTSILQNKMSNYDT 312 (1009)
Q Consensus 298 Rl~~vlqg~~snydt 312 (1009)
|||+.+||+.|+||.
T Consensus 162 RiamylQ~vd~v~dl 176 (279)
T cd00733 162 RIAMYLQGVDNVYDI 176 (279)
T ss_pred HHHHHHhCCCceecc
Confidence 999999999999997
No 31
>COG0752 GlyQ Glycyl-tRNA synthetase, alpha subunit [Translation, ribosomal structure and biogenesis]
Probab=91.94 E-value=0.88 Score=49.27 Aligned_cols=170 Identities=21% Similarity=0.333 Sum_probs=97.4
Q ss_pred CCCChhHHHHHHHHhhhhCCCeeecCCCCccCCCCCcccccccccccccc-cccccCC-CCcccccccccccccccccC-
Q 001826 56 VEWPATKVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFANAGMNQYKPI-FLGTADP-NTQLSKLTRACNTQKCIRAG- 132 (1009)
Q Consensus 56 ~~~~~~eiR~~fl~fF~~~gH~~v~s~slvp~~dptllftnAGm~qfk~~-flg~~~p-~~~~~~~~r~~~~QkCiR~g- 132 (1009)
++|+-..|--+-.+|..++|+.++-++-+ =+ |--.|-|+ ||..--| |+ .++-+|+|-|.+
T Consensus 3 ~~~~fQ~~IltLq~yW~~qGC~i~QpyD~---------ev--GAGT~hPaTfLralGpePw------~aAYVqPSRRP~D 65 (298)
T COG0752 3 KKLTFQGLILTLQNYWAEQGCTILQPYDM---------EV--GAGTFHPATFLRALGPEPW------NAAYVQPSRRPTD 65 (298)
T ss_pred ccccHHHHHHHHHHHHHHcCCEEeccccc---------cc--ccCcCChHHHHHhcCCCcc------ceeeeccCCCCCC
Confidence 46888899999999999999999876543 13 44478896 4533323 22 578999999974
Q ss_pred CCCCCCCCCCCCCCcccccccccccccccccHHHHHHHHHHHcccccCCCCCceEEEEECCCCcCCCCCcHHHHHHHHh-
Q 001826 133 GKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWAWELLTKVYRLPADRLYATYFGGDEKAGLAPDNEARDIWLK- 211 (1009)
Q Consensus 133 GkhnDld~VG~t~rH~TfFEMlGn~SfgdYfK~eai~~awe~lt~~l~i~~~rL~vT~~~~~~~~~~~~D~E~~~iW~~- 211 (1009)
|+. =+|.-+=.+||- |.. .++=+|+++ .++..+
T Consensus 66 GRY--GenPNRlq~yyQ-fQV------------------------ilKPsP~Ni-------------------QeLYL~S 99 (298)
T COG0752 66 GRY--GENPNRLQHYYQ-FQV------------------------IIKPSPDNI-------------------QELYLGS 99 (298)
T ss_pred CCC--CCCchhhhhhee-EEE------------------------EecCCCccH-------------------HHHHHHH
Confidence 111 022222222232 222 123333332 111110
Q ss_pred ---c--CCCCCcccCCCCCCcccCCCCCCCcCceeEEeecCCCCCCCCCCCCCCCceEEEeeecccccccCCCCccccCC
Q 001826 212 ---F--LPASRVLPFGCKDNFWEMGDTGPCGPCSEIHYDRTGNRDAASLVNNDDPTCIEIWNIVFIQFNRESDGSLKPLP 286 (1009)
Q Consensus 212 ---~--~~~~~i~~~~~~dNfW~mG~~GpcGPcsEI~yd~~~~~~~~~~~~~~~~r~lEiwNlVFmq~~~~~~g~l~~Lp 286 (1009)
+ =|.+|=+||= +|| ||-=.-|--|-==|+-.|- +||=- |+=|.+ ..| + ++.
T Consensus 100 L~~lGid~~~HDIRFV-EDn-WE~PTlGawGlGWEVWldG-----------------MEvTQ--FTYFQQ-vGG-i-ec~ 155 (298)
T COG0752 100 LEALGIDPLEHDIRFV-EDN-WENPTLGAWGLGWEVWLDG-----------------MEVTQ--FTYFQQ-VGG-L-ECK 155 (298)
T ss_pred HHHcCCChhhcceeee-ccC-CCCCcccccccceeEEEcC-----------------eeeee--eehhhh-hCC-e-ecc
Confidence 1 2344556663 555 5532236666666776541 56543 332333 333 3 233
Q ss_pred CCcccccccHHHHHHHHcCCCCCccc
Q 001826 287 AKHVDTGLGFERLTSILQNKMSNYDT 312 (1009)
Q Consensus 287 ~~~IDTGmGlERl~~vlqg~~snydt 312 (1009)
.-.+.--+||||||+.+||+.|+||.
T Consensus 156 pV~~EITYGlERlAmYiQ~vdnVydl 181 (298)
T COG0752 156 PVSGEITYGLERLAMYIQGVDNVYDL 181 (298)
T ss_pred ceeeeeehhHHHHHHHHhCccceeEE
Confidence 34556679999999999999999996
No 32
>cd00669 Asp_Lys_Asn_RS_core Asp_Lys_Asn_tRNA synthetase class II core domain. This domain is the core catalytic domain of class II aminoacyl-tRNA synthetases of the subgroup containing aspartyl, lysyl, and asparaginyl tRNA synthetases. It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. Nearly all class II tRNA synthetases are dimers and enzymes in this subgroup are homodimers. These enzymes attach a specific amino acid to the 3' OH group of ribose of the appropriate tRNA.
Probab=85.99 E-value=1.5 Score=48.95 Aligned_cols=102 Identities=17% Similarity=0.271 Sum_probs=58.0
Q ss_pred hHHHHHHHHhhhhCCCeeecCCCCcc-CCCC-Cccccccccccc---ccccccccCCCC----ccccccccccccccccc
Q 001826 61 TKVRDTFFKFFEDKNHVNWKSSPVVP-VNDP-TLLFANAGMNQY---KPIFLGTADPNT----QLSKLTRACNTQKCIRA 131 (1009)
Q Consensus 61 ~eiR~~fl~fF~~~gH~~v~s~slvp-~~dp-tllftnAGm~qf---k~~flg~~~p~~----~~~~~~r~~~~QkCiR~ 131 (1009)
++|-+.+-+||.++|-..|..--+.+ ..++ .-.|.-. .| ++++|-+.+--+ -.+.+.|+-...+|.|.
T Consensus 5 s~i~~~ir~~f~~~gf~ev~tP~l~~~~~~~~~~~f~~~---~~~~g~~~~L~~Spql~~~~~~~~~~~~vf~i~~~fR~ 81 (269)
T cd00669 5 SKIIKAIRDFMDDRGFLEVETPMLQKITGGAGARPFLVK---YNALGLDYYLRISPQLFKKRLMVGGLDRVFEINRNFRN 81 (269)
T ss_pred HHHHHHHHHHHHHCCCEEEECCEEeccCCccccceEEee---ecCCCCcEEeecCHHHHHHHHHhcCCCcEEEEecceeC
Confidence 57888999999999999885433332 1111 1112110 01 223333211000 00124677788899995
Q ss_pred CCCCCCCCCCCCCCCcccccccccc-cccccccHHHHHHHHHHHcc
Q 001826 132 GGKHNDLDDVGKDTYHHTFFEMLGN-WSFGDYFKNEAIEWAWELLT 176 (1009)
Q Consensus 132 gGkhnDld~VG~t~rH~TfFEMlGn-~SfgdYfK~eai~~awe~lt 176 (1009)
| +.|.||+.=|-||-- .+|.|| ++.++.+=+++.
T Consensus 82 -----e----~~~~~hl~EF~~le~e~~~~~~--~dvm~~~e~lv~ 116 (269)
T cd00669 82 -----E----DLRARHQPEFTMMDLEMAFADY--EDVIELTERLVR 116 (269)
T ss_pred -----C----CCCCCcccceeEEEEEEecCCH--HHHHHHHHHHHH
Confidence 4 347799999999843 477777 556666555543
No 33
>TIGR00458 aspS_arch aspartyl-tRNA synthetase, archaeal type. In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, aspS_arch, represents aspartyl-tRNA synthetases from the eukaryotic cytosol and from the Archaea. In some species, this enzyme aminoacylates tRNA for both Asp and Asn; Asp-tRNA(asn) is subsequently transamidated to Asn-tRNA(asn).
Probab=83.44 E-value=11 Score=44.92 Aligned_cols=99 Identities=15% Similarity=0.241 Sum_probs=58.4
Q ss_pred HHHHHHHHhhhhCCCeeecCCCCccCCCCCccccccccccc------ccccccccCCCC----ccccccccccccccccc
Q 001826 62 KVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFANAGMNQY------KPIFLGTADPNT----QLSKLTRACNTQKCIRA 131 (1009)
Q Consensus 62 eiR~~fl~fF~~~gH~~v~s~slvp~~dptllftnAGm~qf------k~~flg~~~p~~----~~~~~~r~~~~QkCiR~ 131 (1009)
.|-+.+-+||.++|-..|..--|++. ++ -.|-..| ++.+|-+.+--+ -.+.+.|+-...+|+|+
T Consensus 138 ~i~~~iR~ff~~~gf~EV~TP~L~~~-~~-----eg~~~~f~v~~~~~~~yL~~Spql~~q~li~~g~~rVf~i~~~FR~ 211 (428)
T TIGR00458 138 GVLESVREFLAEEGFIEVHTPKLVAS-AT-----EGGTELFPITYFEREAFLGQSPQLYKQQLMAAGFERVYEIGPIFRA 211 (428)
T ss_pred HHHHHHHHHHHHCCCEEEeCCceecC-CC-----CCCcceeeeEecCCcEEECcCHHHHHHHHHhcccCcEEEEeccccc
Confidence 45566778999999998864444431 10 0112222 344444332100 01235788888999997
Q ss_pred CCCCCCCCCCCCCCCccccccccccc-ccccccHHHHHHHHHHHcc
Q 001826 132 GGKHNDLDDVGKDTYHHTFFEMLGNW-SFGDYFKNEAIEWAWELLT 176 (1009)
Q Consensus 132 gGkhnDld~VG~t~rH~TfFEMlGn~-SfgdYfK~eai~~awe~lt 176 (1009)
. +.+ |.||.+=|-||--. +|.|| ++.++.+=+++.
T Consensus 212 E-------~~~-t~rHl~EFt~lE~e~a~~~~--~dlm~~~e~li~ 247 (428)
T TIGR00458 212 E-------EHN-THRHLNEATSIDIEMAFEDH--HDVMDILEELVV 247 (428)
T ss_pred C-------CCC-CccchheeeEeeeeeccCCH--HHHHHHHHHHHH
Confidence 3 333 56999888888544 77787 666666555543
No 34
>PRK03932 asnC asparaginyl-tRNA synthetase; Validated
Probab=82.88 E-value=8.5 Score=46.22 Aligned_cols=105 Identities=17% Similarity=0.257 Sum_probs=57.8
Q ss_pred hHHHHHHHHhhhhCCCeeecCCCCccC-CCCCc-cccc-ccc-----ccc-ccccccccCC---CCcccccccccccccc
Q 001826 61 TKVRDTFFKFFEDKNHVNWKSSPVVPV-NDPTL-LFAN-AGM-----NQY-KPIFLGTADP---NTQLSKLTRACNTQKC 128 (1009)
Q Consensus 61 ~eiR~~fl~fF~~~gH~~v~s~slvp~-~dptl-lftn-AGm-----~qf-k~~flg~~~p---~~~~~~~~r~~~~QkC 128 (1009)
+.|-+.+-+||.++|...|..--+.+. .++.. +|.- +-+ +-| ++++|-+.+- .--.+.+.|+-...+|
T Consensus 137 s~i~~~iR~f~~~~gf~EV~TP~L~~~~~eg~~~~F~v~~~~~~~~~~~~~~~~~L~~Spql~lq~l~~g~~rVf~i~~~ 216 (450)
T PRK03932 137 NTLAQAIHEFFNENGFVWVDTPIITASDCEGAGELFRVTTLDLDFSKDFFGKEAYLTVSGQLYAEAYAMALGKVYTFGPT 216 (450)
T ss_pred HHHHHHHHHHHHHCCCEEecCCceeccCCCCCCCceEeecccccccccccCCCcccccCHHHHHHHHHhccCCeEEeeec
Confidence 466677889999999998854444331 11111 1211 101 112 3444433221 0001235788888999
Q ss_pred cccCCCCCCCCCCCCCCCcccccccccc-cccccccHHHHHHHHHHHc
Q 001826 129 IRAGGKHNDLDDVGKDTYHHTFFEMLGN-WSFGDYFKNEAIEWAWELL 175 (1009)
Q Consensus 129 iR~gGkhnDld~VG~t~rH~TfFEMlGn-~SfgdYfK~eai~~awe~l 175 (1009)
+|.. + ..|.||..=|-||-- .+|.|| +|.++.+=+++
T Consensus 217 FR~E-------~-~~t~rHl~EFt~lE~e~~~~~~--~~~m~~~e~li 254 (450)
T PRK03932 217 FRAE-------N-SNTRRHLAEFWMIEPEMAFADL--EDNMDLAEEML 254 (450)
T ss_pred cccC-------C-CCCccccccccccceEEeccCH--HHHHHHHHHHH
Confidence 9973 2 236799888888854 477776 55555544443
No 35
>PF02091 tRNA-synt_2e: Glycyl-tRNA synthetase alpha subunit; InterPro: IPR002310 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. In eubacteria, glycyl-tRNA synthetase (6.1.1.14 from EC) is an alpha2/beta2 tetramer composed of 2 different subunits [, , ]. In some eubacteria, in archaea and eukaryota, glycyl-tRNA synthetase is an alpha2 dimer (see IPR002315 from INTERPRO). It belongs to class IIc and is one of the most complex synthetases. What is most interesting is the lack of similarity between the two types: divergence at the sequence level is so great that it is impossible to infer descent from common genes. The alpha and beta subunits (see IPR002311 from INTERPRO) also lack significant sequence similarity. However, they are translated from a single mRNA [], and a single chain glycyl-tRNA synthetase from Chlamydia trachomatis has been found to have significant similarity with both domains, suggesting divergence from a single polypeptide chain []. This entry represents the alpha subunit of glycyl-tRNA synthetase.; GO: 0000166 nucleotide binding, 0004820 glycine-tRNA ligase activity, 0005524 ATP binding, 0006426 glycyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3RF1_A 3UFG_B 3RGL_B 1J5W_B.
Probab=82.12 E-value=0.74 Score=50.44 Aligned_cols=172 Identities=23% Similarity=0.352 Sum_probs=83.9
Q ss_pred hHHHHHHHHhhhhCCCeeecCCCCccCCCCCcccccccccccccc-cccccCCCCcccccccccccccccccC-CCCCCC
Q 001826 61 TKVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFANAGMNQYKPI-FLGTADPNTQLSKLTRACNTQKCIRAG-GKHNDL 138 (1009)
Q Consensus 61 ~eiR~~fl~fF~~~gH~~v~s~slvp~~dptllftnAGm~qfk~~-flg~~~p~~~~~~~~r~~~~QkCiR~g-GkhnDl 138 (1009)
.+|-.+--+|..++|+.++.++.+= + |--.|-|. |+..--|. | -+++-+|+|.|.. |+.-
T Consensus 2 Q~iI~~Lq~fW~~~GC~i~qPyD~e---------v--GAGT~~P~Tflr~Lgpe-p----w~vaYVqPsrRP~DGRYG-- 63 (284)
T PF02091_consen 2 QDIILTLQKFWADQGCIILQPYDIE---------V--GAGTFHPATFLRALGPE-P----WNVAYVQPSRRPTDGRYG-- 63 (284)
T ss_dssp HHHHHHHHHHHHCTT-EE----SS-------------SSGGGSHHHHTTTSSSS------EEEEEEEEEE-GGG--TT--
T ss_pred HHHHHHHHHHHHHCCCEEECCcccc---------c--ccccCCHHHHHHhcCCC-C----ccccccccCCCCCCCccC--
Confidence 3566777889999999998877652 2 34467774 44433331 1 4789999999972 1111
Q ss_pred CCCCCCCCcccccccccccccccccHHHHHHHHHHHcccccCCCCCceEEEEECCCCcCCCCCcHHHHHHHHhcCCCCCc
Q 001826 139 DDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWAWELLTKVYRLPADRLYATYFGGDEKAGLAPDNEARDIWLKFLPASRV 218 (1009)
Q Consensus 139 d~VG~t~rH~TfFEMlGn~SfgdYfK~eai~~awe~lt~~l~i~~~rL~vT~~~~~~~~~~~~D~E~~~iW~~~~~~~~i 218 (1009)
+|.-+- .||.=|..+=-=|-++ ..+.=.+-| +.+||++.. |=
T Consensus 64 eNPNRL-q~y~QfQVilKPsP~n-----iq~lYL~SL-~~lGId~~~-------------------------------hD 105 (284)
T PF02091_consen 64 ENPNRL-QHYYQFQVILKPSPDN-----IQELYLESL-EALGIDPKE-------------------------------HD 105 (284)
T ss_dssp TSSS---SEEEEEEEEEES--TT-----HHHHHHHHH-HHCT--CCC-------------------------------S-
T ss_pred CCchHh-hhhheeEEEEcCCCcc-----HHHHHHHHH-HHhCCCccc-------------------------------cc
Confidence 333333 3444344432222221 111111112 235665543 33
Q ss_pred ccCCCCCCcccCCCCCCCcCceeEEeecCCCCCCCCCCCCCCCceEEEeeecccccccCCCCccccCCCCcccccccHHH
Q 001826 219 LPFGCKDNFWEMGDTGPCGPCSEIHYDRTGNRDAASLVNNDDPTCIEIWNIVFIQFNRESDGSLKPLPAKHVDTGLGFER 298 (1009)
Q Consensus 219 ~~~~~~dNfW~mG~~GpcGPcsEI~yd~~~~~~~~~~~~~~~~r~lEiwNlVFmq~~~~~~g~l~~Lp~~~IDTGmGlER 298 (1009)
+|| .+|| |+-=.-|--|-==|+--| | +||=-.-+ |.+ ..| + ++..-.+.-=+||||
T Consensus 106 IRF-VEDn-WEsPtLGAwGlGWEVWld---G--------------MEITQfTY--FQQ-vGG-i-~~~pv~~EITYGLER 161 (284)
T PF02091_consen 106 IRF-VEDN-WESPTLGAWGLGWEVWLD---G--------------MEITQFTY--FQQ-VGG-I-DCKPVSVEITYGLER 161 (284)
T ss_dssp EEE-EEE--EEETTTTEEEEEEEEEET---T--------------CEEEEEEE--EEE-ETT-E-E-SS--EEEEEEHHH
T ss_pred eeE-eecC-CCCCcccccccccEEEEC---C--------------EEEEEeee--eee-eCC-c-cccccceehhhhHHH
Confidence 444 2455 442112555544566643 1 56653332 222 233 3 466667788899999
Q ss_pred HHHHHcCCCCCccc
Q 001826 299 LTSILQNKMSNYDT 312 (1009)
Q Consensus 299 l~~vlqg~~snydt 312 (1009)
||+.+||+.|+||.
T Consensus 162 iamylQ~vdnv~dl 175 (284)
T PF02091_consen 162 IAMYLQGVDNVYDL 175 (284)
T ss_dssp HHHHHCT-SSGGGS
T ss_pred HHHHHhCCCeeEee
Confidence 99999999999997
No 36
>cd00670 Gly_His_Pro_Ser_Thr_tRS_core Gly_His_Pro_Ser_Thr_tRNA synthetase class II core domain. This domain is the core catalytic domain of tRNA synthetases of the subgroup containing glycyl, histidyl, prolyl, seryl and threonyl tRNA synthetases. It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. These enzymes belong to class II aminoacyl-tRNA synthetases (aaRS) based upon their structure and the presence of three characteristic sequence motifs in the core domain. This domain is also found at the C-terminus of eukaryotic GCN2 protein kinase and at the N-terminus of the ATP phosphoribosyltransferase accessory subunit, HisZ and the accessory subunit of mitochondrial polymerase gamma (Pol gamma b) . Most class II tRNA synthetases are dimers, with this subgroup consisting of mostly homodimers. These enzymes attach a specific amino acid to the 3' OH group of ribose of the appropriate tRNA.
Probab=81.27 E-value=6.5 Score=42.20 Aligned_cols=106 Identities=20% Similarity=0.237 Sum_probs=65.6
Q ss_pred hHHHHHHHHhhhhCCCeeecCCCCccCCCCCccccccc--------ccccc----------------------ccccccc
Q 001826 61 TKVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFANAG--------MNQYK----------------------PIFLGTA 110 (1009)
Q Consensus 61 ~eiR~~fl~fF~~~gH~~v~s~slvp~~dptllftnAG--------m~qfk----------------------~~flg~~ 110 (1009)
..|.+.+.+.|++.|...|....+.|.+ +|...| |..|. .++....
T Consensus 6 ~~l~~~~~~~~~~~G~~ei~~P~l~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LrP~~~~~i~~~~~~~~ 81 (235)
T cd00670 6 RALERFLDDRMAEYGYQEILFPFLAPTV----LFFKGGHLDGYRKEMYTFEDKGRELRDTDLVLRPAACEPIYQIFSGEI 81 (235)
T ss_pred HHHHHHHHHHHHHcCCEEEECCeEcCHH----HHhhcCCcccchhhcCeeccCcccccCCeEEEecCCCHHHHHHHhccC
Confidence 4688888899999999888776666631 111111 22221 1111111
Q ss_pred CC--CCcccccccccccccccccCCCCCCCCCC-CCCCCccccccccccccccc-----ccHHHHHHHHHHHcccccCCC
Q 001826 111 DP--NTQLSKLTRACNTQKCIRAGGKHNDLDDV-GKDTYHHTFFEMLGNWSFGD-----YFKNEAIEWAWELLTKVYRLP 182 (1009)
Q Consensus 111 ~p--~~~~~~~~r~~~~QkCiR~gGkhnDld~V-G~t~rH~TfFEMlGn~Sfgd-----YfK~eai~~awe~lt~~l~i~ 182 (1009)
.+ +-| -|.+.+.+|.|. ..... |. .|-+- |.|.|-..||+ ..-.|.+++++++|.+ ||+|
T Consensus 82 ~~~~~lP----~r~~~~g~~fR~-----E~~~~~gl-~R~re-F~q~e~~~~~~~~~~~~~~~e~~~~~~~~l~~-lgl~ 149 (235)
T cd00670 82 LSYRALP----LRLDQIGPCFRH-----EPSGRRGL-MRVRE-FRQVEYVVFGEPEEAEEERREWLELAEEIARE-LGLP 149 (235)
T ss_pred ccchhcC----eeeeeecccccC-----CCCCCCCC-hhhee-eeeceEEEEcCHHHHHHHHHHHHHHHHHHHHH-cCCc
Confidence 11 112 478899999995 43332 22 24444 89999999984 4557889999999954 7885
No 37
>PRK00488 pheS phenylalanyl-tRNA synthetase subunit alpha; Validated
Probab=79.03 E-value=2.4 Score=48.84 Aligned_cols=39 Identities=13% Similarity=0.100 Sum_probs=26.2
Q ss_pred ccCC-CCCCCCCChhHHHHHHHHhhhhCCCeeecCCCCcc
Q 001826 48 MPGA-DPQVVEWPATKVRDTFFKFFEDKNHVNWKSSPVVP 86 (1009)
Q Consensus 48 ~~~~-~~~~~~~~~~eiR~~fl~fF~~~gH~~v~s~slvp 86 (1009)
+||. -+.-..-...++++.--++|.+-|.+.+.+..|..
T Consensus 97 ~p~~~~~~G~~HPl~~~~~~Ir~if~~mGF~ev~gpeIes 136 (339)
T PRK00488 97 LPGRRIELGSLHPITQTIEEIEDIFVGMGFEVAEGPEIET 136 (339)
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHhCCCEEEeCCcccc
Confidence 4664 22233344677777888888888999988777754
No 38
>PF01411 tRNA-synt_2c: tRNA synthetases class II (A); InterPro: IPR018164 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Alanyl-tRNA synthetase (6.1.1.7 from EC) is an alpha4 tetramer that belongs to class IIc. ; GO: 0000166 nucleotide binding, 0004813 alanine-tRNA ligase activity, 0005524 ATP binding, 0006419 alanyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3HY1_A 3HXZ_C 3HXY_A 3HXU_A 3HY0_B 3HXV_A 3HXX_A 3HXW_A 2E1B_A 2ZZG_B ....
Probab=76.80 E-value=0.47 Score=58.17 Aligned_cols=114 Identities=24% Similarity=0.238 Sum_probs=75.0
Q ss_pred cCCCCCceEEEEEC--CCCcCCCCCcHHHHHH-HH---hc--CCCCCcccCCCCCCcccCCCCCCCcCceeEEeecCCCC
Q 001826 179 YRLPADRLYATYFG--GDEKAGLAPDNEARDI-WL---KF--LPASRVLPFGCKDNFWEMGDTGPCGPCSEIHYDRTGNR 250 (1009)
Q Consensus 179 l~i~~~rL~vT~~~--~~~~~~~~~D~E~~~i-W~---~~--~~~~~i~~~~~~dNfW~mG~~GpcGPcsEI~yd~~~~~ 250 (1009)
-|.+.-.+ |+|+ |.-+-|-+--+||-+. |. +. +|++||.- ....|. |.||+|=|.++ |+
T Consensus 76 VG~t~rH~--T~FEMlGn~sfgdYfK~eai~~awe~lt~~l~i~~~~l~v---t~~~~d----~ea~~~w~~~~---g~- 142 (552)
T PF01411_consen 76 VGRTGRHH--TFFEMLGNFSFGDYFKEEAIEYAWEFLTEVLGIPPDRLYV---TVFEWD----GEAGEIWEKIV---GG- 142 (552)
T ss_dssp TTTSSS----SEEEEEEEEEECSS-HHHHHHHHHHHHHCTTT--GGGEEE---EEECCE----CCCCCCCCECC---TT-
T ss_pred cCCCceEe--eehhhccccccccccHHHHHHHHHHHHHhhcCCChHhEEE---EEeCCc----hhHHHHHHHhc---CC-
Confidence 34554443 6765 3333444455666553 32 22 88888865 233332 48999998883 33
Q ss_pred CCCCCCCCCCCceEEEeeecc---cccccCCCCccccCCCCcccccccHHHHHHHHcCCCCCccccccHHHHH
Q 001826 251 DAASLVNNDDPTCIEIWNIVF---IQFNRESDGSLKPLPAKHVDTGLGFERLTSILQNKMSNYDTDVFMPIFD 320 (1009)
Q Consensus 251 ~~~~~~~~~~~r~lEiwNlVF---mq~~~~~~g~l~~Lp~~~IDTGmGlERl~~vlqg~~snydtdlf~pli~ 320 (1009)
.|.-++|| |+|....++ .-..|..-||+|+|+||..|..++.++.|+. .|..|.+
T Consensus 143 -------------~~~~i~~~~~~~nfw~~g~~-gpcgpcseI~~d~G~e~~~~~~~~~~~~~~~-~~~eiwn 200 (552)
T PF01411_consen 143 -------------PEERILVFGKKDNFWEMGDT-GPCGPCSEIFYDRGEERGCWDSQGTPTCDDD-RFLEIWN 200 (552)
T ss_dssp -------------ECCCEEEE-CCEEEEESSTS-EEEEEEEEEEEEEECCCHHHHHHSTSSHHHH-HECCCCC
T ss_pred -------------CHHHeEecCCCCceEECCCC-CCCCCCEEEEECCCcccCccccccccccccc-cHHHHHH
Confidence 67778899 999976654 5779999999999999999999999997765 5655544
No 39
>PRK06462 asparagine synthetase A; Reviewed
Probab=74.50 E-value=14 Score=42.78 Aligned_cols=107 Identities=17% Similarity=0.189 Sum_probs=56.1
Q ss_pred hhHHHHHHHHhhhhCCCeeecCCCCccCCCCCccc-cccccccc------ccccccccCC---CCccccccccccccccc
Q 001826 60 ATKVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLF-ANAGMNQY------KPIFLGTADP---NTQLSKLTRACNTQKCI 129 (1009)
Q Consensus 60 ~~eiR~~fl~fF~~~gH~~v~s~slvp~~dptllf-tnAGm~qf------k~~flg~~~p---~~~~~~~~r~~~~QkCi 129 (1009)
-++|-+.+-+||.++|-..|..==+.+..+|-+-- .+-|...| ++++|-+++- .--.+.+.|+-...+|.
T Consensus 33 Rs~i~~~iR~ff~~~~f~EV~TP~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~yL~~Spql~k~ll~~g~~rVfeI~p~F 112 (335)
T PRK06462 33 QSSILRYTREFLDGRGFVEVLPPIISPSTDPLMGLGSDLPVKQISIDFYGVEYYLADSMILHKQLALRMLGKIFYLSPNF 112 (335)
T ss_pred HHHHHHHHHHHHHHCCCEEEeCCeEecCCCCCCCccccCCccccccccCCCceeeccCHHHHHHHHHhhcCcEEEEeccc
Confidence 35677888899999998877433233322221100 00001111 2233322210 00011257888889999
Q ss_pred ccCCCCCCCCCCCC-CCCccccccccccc-ccccccHHHHHHHHHHHc
Q 001826 130 RAGGKHNDLDDVGK-DTYHHTFFEMLGNW-SFGDYFKNEAIEWAWELL 175 (1009)
Q Consensus 130 R~gGkhnDld~VG~-t~rH~TfFEMlGn~-SfgdYfK~eai~~awe~l 175 (1009)
|+. .++. +.||..=|-||--. .|.|| ++.++.+=+++
T Consensus 113 R~E-------~~~~~~~rHl~EFtmlE~e~~~~d~--~dlm~~~e~lv 151 (335)
T PRK06462 113 RLE-------PVDKDTGRHLYEFTQLDIEIEGADL--DEVMDLIEDLI 151 (335)
T ss_pred cCC-------CCCCCCCCCCCchheeeehhhcCCH--HHHHHHHHHHH
Confidence 983 3442 26999888888544 55565 44555444444
No 40
>PTZ00450 macrophage migration inhibitory factor-like protein; Provisional
Probab=71.94 E-value=3.7 Score=39.97 Aligned_cols=25 Identities=28% Similarity=0.505 Sum_probs=21.1
Q ss_pred HHHHHHHHcccccCCCCCceEEEEE
Q 001826 167 AIEWAWELLTKVYRLPADRLYATYF 191 (1009)
Q Consensus 167 ai~~awe~lt~~l~i~~~rL~vT~~ 191 (1009)
--.---++|+++||||++|+|+.|+
T Consensus 77 ~s~~i~~~l~~~LgIp~dRiYI~f~ 101 (113)
T PTZ00450 77 MTPRITAAITKECGIPAERIYVFYY 101 (113)
T ss_pred HHHHHHHHHHHHcCCCcccEEEEEE
Confidence 3345568899999999999999997
No 41
>TIGR00644 recJ single-stranded-DNA-specific exonuclease RecJ. All proteins in this family are 5'-3' single-strand DNA exonucleases. These proteins are used in some aspects of mismatch repair, recombination, and recombinational repair.
Probab=71.71 E-value=51 Score=40.56 Aligned_cols=71 Identities=17% Similarity=0.240 Sum_probs=43.5
Q ss_pred cEEEEEeccCCCHHHHHHHHHHHHhccCCcEEEEEEeCCCCeEEEEEeeCCCcccccCccHHHHHHHHHhhcCCccCCCC
Q 001826 893 PFCISRVEVGLDAAAVREAVLKVIEQKGMPVMVFSTDETTNKAVVCAGVPEKSDQSKQLEVSEWLTAALQPLKGRCGKGK 972 (1009)
Q Consensus 893 ~~iv~~~~~~~d~~~L~~~a~~l~~~~~~~vvll~~~~~~~k~~~~~~v~~~~~~~~~~~A~~~~k~v~~~lgGkGG~Gk 972 (1009)
+++|..- .+.....+--+|.++.+..+.++++++..++. .+ -++.. ...++|+.++++.+...++++|| |=
T Consensus 325 ~~~v~~~-~~~~~Gv~GivA~rl~~~~~kP~ivls~~~~~-~~---kgS~R---s~~g~nl~~~l~~~~~~~l~~~G-GH 395 (539)
T TIGR00644 325 SVIVVAG-ENWHPGVLGIVASRLAETFNKPVIVLAIDEGK-GA---KGSAR---SISGIDLYDLLSELREALFLKFG-GH 395 (539)
T ss_pred cEEEEEe-CCCCCchHHHHHHHHHHHHCCCEEEEEEcCCc-eE---EEeec---cCCCCcHHHHHHHHHHhhccccC-Ch
Confidence 3444332 23445567778888888667788888764322 11 11112 12469999999998885677777 53
No 42
>KOG1759 consensus Macrophage migration inhibitory factor [Defense mechanisms]
Probab=64.90 E-value=6 Score=38.49 Aligned_cols=23 Identities=30% Similarity=0.512 Sum_probs=20.3
Q ss_pred HHHHHcccccCCCCCceEEEEEC
Q 001826 170 WAWELLTKVYRLPADRLYATYFG 192 (1009)
Q Consensus 170 ~awe~lt~~l~i~~~rL~vT~~~ 192 (1009)
---|+|.++|+||++|+|++||.
T Consensus 79 ~l~~il~~~L~l~~~rv~I~f~d 101 (115)
T KOG1759|consen 79 ALTEILEKELSLDPDRVYIKFYD 101 (115)
T ss_pred HHHHHHHHHhCCCCCeEEEEEec
Confidence 34689999999999999999984
No 43
>PF01422 zf-NF-X1: NF-X1 type zinc finger; InterPro: IPR000967 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a domain presumed to be a zinc binding domain. The following pattern describes the zinc finger: C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C where X can be any amino acid, and numbers in brackets indicate the number of residues. The two position can be either His or Cys. This domain is found in the human transcriptional repressor NK-X1, a repressor of HLA-DRA transcription; the Drosophila shuttle craft protein, which plays an essential role during the late stages of embryonic neurogenesis; and a yeast hypothetical protein YNL023C. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=60.13 E-value=3.8 Score=27.78 Aligned_cols=9 Identities=56% Similarity=1.678 Sum_probs=7.6
Q ss_pred CCCCcCcee
Q 001826 233 TGPCGPCSE 241 (1009)
Q Consensus 233 ~GpcGPcsE 241 (1009)
.|||+||++
T Consensus 12 ~G~C~pC~~ 20 (20)
T PF01422_consen 12 PGPCPPCPQ 20 (20)
T ss_pred CCcCCCCCC
Confidence 599999974
No 44
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=59.62 E-value=7.5 Score=45.75 Aligned_cols=80 Identities=21% Similarity=0.281 Sum_probs=54.5
Q ss_pred cccccccHHHHHHHHcCCCCCccccccHHHHHHHHHHhCCCCCCCCCCCCccccccchhhhh----hhhhhhh---eeee
Q 001826 289 HVDTGLGFERLTSILQNKMSNYDTDVFMPIFDAIQQATGARPYSGKVGADDADKVDMAYRVV----ADHIRTL---SFAI 361 (1009)
Q Consensus 289 ~IDTGmGlERl~~vlqg~~snydtdlf~pli~~i~~~~~~~~y~g~~~~~~~~~~~~~~rvi----aDH~R~~---~~~i 361 (1009)
.|+||-||=-+-++-.|..+.|-..+|.|+.+...++..+.+.+.++.. .++-.+-..++ ||-+-+- +=+|
T Consensus 72 digtGTGLLSmMAvragaD~vtA~EvfkPM~d~arkI~~kng~SdkI~v--InkrStev~vg~~~RadI~v~e~fdtEli 149 (636)
T KOG1501|consen 72 DIGTGTGLLSMMAVRAGADSVTACEVFKPMVDLARKIMHKNGMSDKINV--INKRSTEVKVGGSSRADIAVREDFDTELI 149 (636)
T ss_pred EccCCccHHHHHHHHhcCCeEEeehhhchHHHHHHHHHhcCCCccceee--eccccceeeecCcchhhhhhHhhhhhhhh
Confidence 5889999999999999999999999999999999998876555443321 00001111222 3333222 3478
Q ss_pred cCCCccCCC
Q 001826 362 ADGSCPGNE 370 (1009)
Q Consensus 362 ~DGv~Psn~ 370 (1009)
..|++||=+
T Consensus 150 geGalps~q 158 (636)
T KOG1501|consen 150 GEGALPSLQ 158 (636)
T ss_pred ccccchhHH
Confidence 899998843
No 45
>PTZ00397 macrophage migration inhibition factor-like protein; Provisional
Probab=55.45 E-value=11 Score=36.54 Aligned_cols=29 Identities=10% Similarity=0.256 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHcccccCCCCCceEEEEEC
Q 001826 164 KNEAIEWAWELLTKVYRLPADRLYATYFG 192 (1009)
Q Consensus 164 K~eai~~awe~lt~~l~i~~~rL~vT~~~ 192 (1009)
|++-.+---++|.+.||+||+|+||.+++
T Consensus 74 k~~l~~~i~~~l~~~lgi~~~rv~I~f~~ 102 (116)
T PTZ00397 74 NSSIAAAITKILASHLKVKSERVYIEFKD 102 (116)
T ss_pred HHHHHHHHHHHHHHHhCcCcccEEEEEEE
Confidence 45556666788999999999999999875
No 46
>PTZ00401 aspartyl-tRNA synthetase; Provisional
Probab=53.53 E-value=15 Score=45.21 Aligned_cols=98 Identities=19% Similarity=0.308 Sum_probs=60.6
Q ss_pred HHHHHHHHhhhhCCCeeecCCCCccCCCCCccccccccccc------ccccccccCCCC---cc-ccccccccccccccc
Q 001826 62 KVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFANAGMNQY------KPIFLGTADPNT---QL-SKLTRACNTQKCIRA 131 (1009)
Q Consensus 62 eiR~~fl~fF~~~gH~~v~s~slvp~~dptllftnAGm~qf------k~~flg~~~p~~---~~-~~~~r~~~~QkCiR~ 131 (1009)
.|-+.|-+||.++|..-|..-.|+... +..|-+.| ++++|-+.+--+ -. +++.|+-...+|+|+
T Consensus 218 ~i~~~~R~fl~~~gFiEV~TP~L~~~~------~egga~~F~v~yf~~~~~L~qSpql~kq~li~~g~~rVfeI~p~FRa 291 (550)
T PTZ00401 218 RVCQYFRQFLIDSDFCEIHSPKIINAP------SEGGANVFKLEYFNRFAYLAQSPQLYKQMVLQGDVPRVFEVGPVFRS 291 (550)
T ss_pred HHHHHHHHHHHHCCCEEEeCCccccCC------CCccccccccccCCCCeecCCCHHHHHHHHHhcCCCCEEEEeCeEeC
Confidence 566788899999999988654444311 11233334 344554432100 01 246788889999997
Q ss_pred CCCCCCCCCCCCCCCcccccccccc-cccc-cccHHHHHHHHHHHc
Q 001826 132 GGKHNDLDDVGKDTYHHTFFEMLGN-WSFG-DYFKNEAIEWAWELL 175 (1009)
Q Consensus 132 gGkhnDld~VG~t~rH~TfFEMlGn-~Sfg-dYfK~eai~~awe~l 175 (1009)
|+.+ |.||++=|-||-- .+|+ +| +|.++.+=+++
T Consensus 292 -------E~s~-T~RHl~EFt~Le~E~~~~~~y--~evm~~~e~l~ 327 (550)
T PTZ00401 292 -------ENSN-THRHLTEFVGLDVEMRINEHY--YEVLDLAESLF 327 (550)
T ss_pred -------CCCC-CCCCccchhhhhhhhHhcCCH--HHHHHHHHHHH
Confidence 3443 7799999999977 7886 56 34555444444
No 47
>COG0016 PheS Phenylalanyl-tRNA synthetase alpha subunit [Translation, ribosomal structure and biogenesis]
Probab=49.53 E-value=16 Score=42.05 Aligned_cols=36 Identities=14% Similarity=0.161 Sum_probs=25.5
Q ss_pred cccCCCCC-CCCCChhHHHHHHHHhhhhCCCeeecCC
Q 001826 47 AMPGADPQ-VVEWPATKVRDTFFKFFEDKNHVNWKSS 82 (1009)
Q Consensus 47 ~~~~~~~~-~~~~~~~eiR~~fl~fF~~~gH~~v~s~ 82 (1009)
.+||.... -..-...++++...++|.+.|-+.+...
T Consensus 99 ~lp~~~~~~G~~Hpl~~~~e~i~~iF~~mGF~~~~gp 135 (335)
T COG0016 99 TLPGRRIYPGSLHPLTQTIEEIEDIFLGMGFTEVEGP 135 (335)
T ss_pred CCCCccCCCCCcChHHHHHHHHHHHHHHcCceeccCC
Confidence 35665333 3444577888999999999999888754
No 48
>PTZ00326 phenylalanyl-tRNA synthetase alpha chain; Provisional
Probab=46.47 E-value=42 Score=40.83 Aligned_cols=122 Identities=20% Similarity=0.247 Sum_probs=70.4
Q ss_pred ccccccccccccCCCCCCCCCCCCCCCcc-cccccccccccc-cccHHHHHHHHHHHcccccCCCCCceEEEEECCCCcC
Q 001826 120 TRACNTQKCIRAGGKHNDLDDVGKDTYHH-TFFEMLGNWSFG-DYFKNEAIEWAWELLTKVYRLPADRLYATYFGGDEKA 197 (1009)
Q Consensus 120 ~r~~~~QkCiR~gGkhnDld~VG~t~rH~-TfFEMlGn~Sfg-dYfK~eai~~awe~lt~~l~i~~~rL~vT~~~~~~~~ 197 (1009)
-|..+..+|.| ||=.+ ..|+ .|..|=| +-+| +.=-.+-+..+-+|+.. +|+..=|.--+||-
T Consensus 358 ~k~fsigrVfR-----~d~~D----atH~~eFhQ~Eg-~vi~~~~s~~~L~~~l~~f~~~-lG~~~~RfrP~yfP----- 421 (494)
T PTZ00326 358 KKYFSIDRVFR-----NETLD----ATHLAEFHQVEG-FVIDRNLTLGDLIGTIREFFRR-IGITKLRFKPAFNP----- 421 (494)
T ss_pred ceEEecCCEec-----CCCCC----CCcCceeEEEEE-EEEeCCCCHHHHHHHHHHHHHh-cCCCceEEecCCCC-----
Confidence 47788889999 46433 3343 4444422 2222 11124678888888865 58754455445542
Q ss_pred CCCCcHHHHHHHHhcCCCCCcccCCCCCCcccCCCCCCCcCceeEEeecCCCCCCCCCCCCCCCceEEEeeeccccccc-
Q 001826 198 GLAPDNEARDIWLKFLPASRVLPFGCKDNFWEMGDTGPCGPCSEIHYDRTGNRDAASLVNNDDPTCIEIWNIVFIQFNR- 276 (1009)
Q Consensus 198 ~~~~D~E~~~iW~~~~~~~~i~~~~~~dNfW~mG~~GpcGPcsEI~yd~~~~~~~~~~~~~~~~r~lEiwNlVFmq~~~- 276 (1009)
| | =|+-||+..+.+ +.+||||-|.=..+=+-
T Consensus 422 -----------------------f-----------T---EPS~Ev~v~~~~-----------~gkWIEIgg~Gm~rpevL 453 (494)
T PTZ00326 422 -----------------------Y-----------T---EPSMEIFGYHPG-----------LKKWVEVGNSGIFRPEML 453 (494)
T ss_pred -----------------------C-----------C---CCeeEEEEEecC-----------CCcEEEEeCcCccCHHHH
Confidence 1 2 357888865532 13599999875544111
Q ss_pred CCCCccccCCCCcccccccHHHHHHHHcCCC
Q 001826 277 ESDGSLKPLPAKHVDTGLGFERLTSILQNKM 307 (1009)
Q Consensus 277 ~~~g~l~~Lp~~~IDTGmGlERl~~vlqg~~ 307 (1009)
.+-| + |=+...+==||||||+|++.-|.+
T Consensus 454 ~~~G-i-~~~~~~~A~GlGleRlaMi~ygi~ 482 (494)
T PTZ00326 454 RPMG-F-PEDVTVIAWGLSLERPTMIKYGIK 482 (494)
T ss_pred HhcC-C-CCcceEEEEEecHHHHHHHHhCCc
Confidence 1123 1 112235667999999999998754
No 49
>TIGR00470 sepS O-phosphoseryl-tRNA(Cys) synthetase. This family of archaeal proteins resembles known phenylalanyl-tRNA synthetase alpha chains. Recently, it was shown to act in a proposed pathway of tRNA(Cys) indirect aminoacylation, resulting in Cys biosynthesis from O-phosphoserine, in certain archaea. It charges tRNA(Cys) with O-phosphoserine. The pscS gene product converts the phosphoserine to Cys.
Probab=45.96 E-value=33 Score=41.28 Aligned_cols=19 Identities=42% Similarity=0.560 Sum_probs=15.7
Q ss_pred cccccccHHHHHHHHcCCC
Q 001826 289 HVDTGLGFERLTSILQNKM 307 (1009)
Q Consensus 289 ~IDTGmGlERl~~vlqg~~ 307 (1009)
++==|||+||||++.-|.+
T Consensus 317 V~AFGIGVERlAMi~ygi~ 335 (533)
T TIGR00470 317 VMNLGLGVERLAMILYGYE 335 (533)
T ss_pred eEEEEecHHHHHHHHhCCc
Confidence 3667999999999998843
No 50
>PF01187 MIF: Macrophage migration inhibitory factor (MIF); InterPro: IPR001398 Macrophage migration inhibitory factor (MIF) is a key regulatory cytokine within innate and adaptive immune responses, capable of promoting and modulating the magnitude of the response []. MIF is released from T-cells and macrophages, and acts within the neuroendocrine system. MIF is capable of tautomerase activity, although its biological function has not been fully characterised. It is induced by glucocorticoid and is capable of overriding the anti-inflammatory actions of glucocorticoid []. MIF regulates cytokine secretion and the expression of receptors involved in the immune response. It can be taken up into target cells in order to interact with intracellular signalling molecules, inhibiting p53 function, and/or activating components of the mitogen-activated protein kinase and Jun-activation domain-binding protein-1 (Jab-1) []. MIF has been linked to various inflammatory diseases, such as rheumatoid arthritis and atherosclerosis []. The MIF homologue D-dopachrome tautomerase (4.1.1.84 from EC) is involved in detoxification through the conversion of dopaminechrome (and possibly norepinephrinechrome), the toxic quinine product of the neurotransmitter dopamine (and norepinephrine), to an indole derivative that can serve as a precursor to neuromelanin [, ].; PDB: 1UIZ_C 3FWT_A 1HFO_F 2WKB_D 3RF4_B 2OS5_A 3RF5_A 2XCZ_A 3FWU_A 3B64_A ....
Probab=45.87 E-value=14 Score=35.74 Aligned_cols=24 Identities=25% Similarity=0.493 Sum_probs=18.1
Q ss_pred HHHHHHcccccCCCCCceEEEEEC
Q 001826 169 EWAWELLTKVYRLPADRLYATYFG 192 (1009)
Q Consensus 169 ~~awe~lt~~l~i~~~rL~vT~~~ 192 (1009)
.---+||.++||||++|+|+.++.
T Consensus 77 ~~i~~~l~~~LgIp~~Riyi~f~d 100 (114)
T PF01187_consen 77 AAITEFLEEELGIPPDRIYINFHD 100 (114)
T ss_dssp HHHHHHHHHHHT--GGGEEEEEEE
T ss_pred HHHHHHHHHHhCCCcCceEEEEEE
Confidence 334578999999999999999874
No 51
>cd00776 AsxRS_core Asx tRNA synthetase (AspRS/AsnRS) class II core domain. Assignment to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure and the presence of three characteristic sequence motifs in the core domain. This family includes AsnRS as well as a subgroup of AspRS. AsnRS and AspRS are homodimers, which attach either asparagine or aspartate to the 3'OH group of ribose of the appropriate tRNA. While archaea lack asnRS, they possess a non-discriminating aspRS, which can mischarge Asp-tRNA with Asn. Subsequently, a tRNA-dependent aspartate amidotransferase converts the bound aspartate to asparagine. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate.
Probab=44.64 E-value=25 Score=40.39 Aligned_cols=101 Identities=23% Similarity=0.380 Sum_probs=62.5
Q ss_pred hhHHHHHHHHhhhhCCCeeecCCCCccCCCCCccccccccccc------ccccccccCCC---Ccccccccccccccccc
Q 001826 60 ATKVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFANAGMNQY------KPIFLGTADPN---TQLSKLTRACNTQKCIR 130 (1009)
Q Consensus 60 ~~eiR~~fl~fF~~~gH~~v~s~slvp~~dptllftnAGm~qf------k~~flg~~~p~---~~~~~~~r~~~~QkCiR 130 (1009)
-+.|.+.+-+||.++|...|..-.+.+. +. .++..+| +|.||-+++-- .-+..+.|+-...+|+|
T Consensus 27 rs~i~~~ir~~f~~~gf~eV~TP~l~~~-~~-----e~~~~~f~~~~~~~~~yL~~Spql~lk~l~~~~~~vf~i~~~FR 100 (322)
T cd00776 27 RSEVLRAFREFLRENGFTEVHTPKITST-DT-----EGGAELFKVSYFGKPAYLAQSPQLYKEMLIAALERVYEIGPVFR 100 (322)
T ss_pred HHHHHHHHHHHHHHCCCEEeeCCceecC-CC-----CccCCccccccCCCcceecCCHHHHHHHHHHhhhhhEEeccccc
Confidence 4578889999999999999976556552 11 1344445 44555443210 00112578888899999
Q ss_pred cCCCCCCCCCCCCCCCccccccccccc-ccc-cccHHHHHHHHHHHcc
Q 001826 131 AGGKHNDLDDVGKDTYHHTFFEMLGNW-SFG-DYFKNEAIEWAWELLT 176 (1009)
Q Consensus 131 ~gGkhnDld~VG~t~rH~TfFEMlGn~-Sfg-dYfK~eai~~awe~lt 176 (1009)
.. + ..+.||+.=|-||.-. +|. || ++.++.+=++|.
T Consensus 101 ~E-------~-~~~~rHl~EFtmlE~e~~~~~~~--~dlm~~~e~ll~ 138 (322)
T cd00776 101 AE-------K-SNTRRHLSEFWMLEAEMAFIEDY--NEVMDLIEELIK 138 (322)
T ss_pred cC-------C-CCcCCCcceeeccceeeeccCCH--HHHHHHHHHHHH
Confidence 73 1 2356999999998654 454 55 555555555543
No 52
>PLN02850 aspartate-tRNA ligase
Probab=41.85 E-value=28 Score=42.77 Aligned_cols=101 Identities=19% Similarity=0.217 Sum_probs=58.9
Q ss_pred HHHHHHHHhhhhCCCeeecCCCCccCC-CCC-ccccccccccc-ccccccccCCCC----cccccccccccccccccCCC
Q 001826 62 KVRDTFFKFFEDKNHVNWKSSPVVPVN-DPT-LLFANAGMNQY-KPIFLGTADPNT----QLSKLTRACNTQKCIRAGGK 134 (1009)
Q Consensus 62 eiR~~fl~fF~~~gH~~v~s~slvp~~-dpt-llftnAGm~qf-k~~flg~~~p~~----~~~~~~r~~~~QkCiR~gGk 134 (1009)
.|-+.|-+||.++|...|..--|++.. ++. -.|.- ..| ++++|-+.+--+ -.+.+.|+-..-+|+|+.
T Consensus 230 ~i~~~~R~fl~~~gF~EV~TP~L~~~~~egga~~F~v---~yf~~~~~L~qSpql~kq~li~~g~~rVfeIgp~FRaE-- 304 (530)
T PLN02850 230 QVCNLFREFLLSKGFVEIHTPKLIAGASEGGSAVFRL---DYKGQPACLAQSPQLHKQMAICGDFRRVFEIGPVFRAE-- 304 (530)
T ss_pred HHHHHHHHHHHHCCcEEEeCCccccCCCccccceeee---ccCCcceecCCCHHHHHHHHHHhcCCceEEEecccccC--
Confidence 566778899999998888544443311 110 11221 011 555665432100 012467888899999973
Q ss_pred CCCCCCCCCCCCccccccccccc-ccc-cccHHHHHHHHHHHc
Q 001826 135 HNDLDDVGKDTYHHTFFEMLGNW-SFG-DYFKNEAIEWAWELL 175 (1009)
Q Consensus 135 hnDld~VG~t~rH~TfFEMlGn~-Sfg-dYfK~eai~~awe~l 175 (1009)
+ ..|.||.+=|-||--. +|+ || +|.++.+=+++
T Consensus 305 -----~-s~t~RHl~EFt~Le~Em~~~~~y--~evm~~~E~ll 339 (530)
T PLN02850 305 -----D-SFTHRHLCEFTGLDLEMEIKEHY--SEVLDVVDELF 339 (530)
T ss_pred -----C-CCCCccchhhccchhhhhhhcCH--HHHHHHHHHHH
Confidence 3 2578999999999655 777 45 44444444433
No 53
>smart00438 ZnF_NFX Repressor of transcription.
Probab=39.26 E-value=13 Score=26.96 Aligned_cols=11 Identities=45% Similarity=1.304 Sum_probs=8.9
Q ss_pred CCCCcCceeEE
Q 001826 233 TGPCGPCSEIH 243 (1009)
Q Consensus 233 ~GpcGPcsEI~ 243 (1009)
.|||+||.+..
T Consensus 12 ~G~C~pC~~~~ 22 (26)
T smart00438 12 PGPCPPCKQXX 22 (26)
T ss_pred CCcCcCccccc
Confidence 49999999654
No 54
>PF01409 tRNA-synt_2d: tRNA synthetases class II core domain (F); InterPro: IPR002319 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Phenylalanyl-tRNA synthetase (6.1.1.20 from EC) is an alpha2/beta2 tetramer composed of 2 subunits that belongs to class IIc. In eubacteria, a small subunit (pheS gene) can be designated as beta (E. coli) or alpha subunit (nomenclature adopted in InterPro). Reciprocally the large subunit (pheT gene) can be designated as alpha (E. coli) or beta (see IPR004531 from INTERPRO and IPR004532 from INTERPRO). In all other kingdoms the two subunits have equivalent length in eukaryota, and can be identified by specific signatures. The enzyme from Thermus thermophilus has an alpha 2 beta 2 type quaternary structure and is one of the most complicated members of the synthetase family. Identification of phenylalanyl-tRNA synthetase as a member of class II aaRSs was based only on sequence alignment of the small alpha-subunit with other synthetases [].; GO: 0000049 tRNA binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0043039 tRNA aminoacylation, 0005737 cytoplasm; PDB: 3TUP_A 3HFV_A 3CMQ_A 3TEG_A 2AKW_B 1B70_B 1B7Y_B 2ALY_B 2IY5_B 2AMC_B ....
Probab=38.73 E-value=16 Score=40.48 Aligned_cols=25 Identities=16% Similarity=0.100 Sum_probs=21.7
Q ss_pred hhHHHHHHHHhhhhCCCeeecCCCC
Q 001826 60 ATKVRDTFFKFFEDKNHVNWKSSPV 84 (1009)
Q Consensus 60 ~~eiR~~fl~fF~~~gH~~v~s~sl 84 (1009)
..++++.-.++|.+.|...+..+++
T Consensus 19 ~~~~~~~i~~~~~~~Gf~e~~~~~v 43 (247)
T PF01409_consen 19 ITKFIREIRDIFVGMGFQEVEGPEV 43 (247)
T ss_dssp HHHHHHHHHHHHHCTTSEEESTTSE
T ss_pred HHHHHHHHHHHHHHCCCeEeeCCeE
Confidence 6788888888999999999997777
No 55
>PLN02853 Probable phenylalanyl-tRNA synthetase alpha chain
Probab=37.16 E-value=28 Score=42.14 Aligned_cols=30 Identities=23% Similarity=0.205 Sum_probs=23.8
Q ss_pred CCCCCChhHHHHHHHHhhhhCCCeeecCCC
Q 001826 54 QVVEWPATKVRDTFFKFFEDKNHVNWKSSP 83 (1009)
Q Consensus 54 ~~~~~~~~eiR~~fl~fF~~~gH~~v~s~s 83 (1009)
.-..-...++|+.+-++|.+.|.+.++..|
T Consensus 217 ~G~~HPl~~~~~ei~~if~~mGF~e~~~g~ 246 (492)
T PLN02853 217 GGHLHPLLKVRQQFRKIFLQMGFEEMPTNN 246 (492)
T ss_pred CCCCCHHHHHHHHHHHHHHhCCCEEecCCC
Confidence 344456889999999999999999996443
No 56
>KOG2783 consensus Phenylalanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=32.61 E-value=21 Score=41.49 Aligned_cols=41 Identities=20% Similarity=0.187 Sum_probs=27.0
Q ss_pred eEecccchhhhhccccccccccCCCCCCCCCChhHHHHHHHHhhhhCCC
Q 001826 28 AVTNHHHSLISRFSASAVAAMPGADPQVVEWPATKVRDTFFKFFEDKNH 76 (1009)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eiR~~fl~fF~~~gH 76 (1009)
+.+||--+.++++..+ -|+...-...-+|++|-++|.+-+-
T Consensus 50 ~~~Nv~~~i~~~~gr~--------lh~~~~hplg~lr~~i~~~f~~~~~ 90 (436)
T KOG2783|consen 50 AWSNVTPSILSLLGRN--------LHQKESHPLGILRQRIEDYFYKTYR 90 (436)
T ss_pred ccccCChhhhhhcccc--------hhhhccCchhHHHHHHHHHHHHhhc
Confidence 3456665555555433 3455555567799999999988755
No 57
>COG2024 Phenylalanyl-tRNA synthetase alpha subunit (archaeal type) [Translation, ribosomal structure and biogenesis]
Probab=30.77 E-value=68 Score=37.44 Aligned_cols=58 Identities=26% Similarity=0.332 Sum_probs=38.2
Q ss_pred cCceeEEeecCCCCCCCCCCCCCCCceEEEeeecccccccCCCCcccc-------CCCCcccccccHHHHHHHHcCCC
Q 001826 237 GPCSEIHYDRTGNRDAASLVNNDDPTCIEIWNIVFIQFNRESDGSLKP-------LPAKHVDTGLGFERLTSILQNKM 307 (1009)
Q Consensus 237 GPcsEI~yd~~~~~~~~~~~~~~~~r~lEiwNlVFmq~~~~~~g~l~~-------Lp~~~IDTGmGlERl~~vlqg~~ 307 (1009)
|--||+|=-|.. -.++ ..+-+|.|+||..- |-|+| .|.++..-|.|.||||+||.|.+
T Consensus 279 ~TQTEVyAyHPk-L~gs--~~kysdgWiEiATF----------GlYSP~ALaeY~Id~pVMNLGlGVERlaMIl~g~~ 343 (536)
T COG2024 279 GTQTEVYAYHPK-LVGS--IEKYSDGWIEIATF----------GLYSPIALAEYGIDYPVMNLGLGVERLAMILHGAD 343 (536)
T ss_pred CccceEEEeccc-cccc--ccccCCCcEEEEee----------cccChHHHHHcCCCCceeecchhHHHHHHHHhCch
Confidence 457999854421 0011 12456789999853 33444 56667778999999999998844
No 58
>cd00777 AspRS_core Asp tRNA synthetase (aspRS) class II core domain. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. AspRS is a homodimer, which attaches a specific amino acid to the 3' OH group of ribose of the appropriate tRNA. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. AspRS in this family differ from those found in the AsxRS family by a GAD insert in the core domain.
Probab=28.89 E-value=30 Score=38.91 Aligned_cols=103 Identities=16% Similarity=0.243 Sum_probs=56.3
Q ss_pred hHHHHHHHHhhhhCCCeeecCCCCccCCCCCc--cccccccccccc-ccccccCCCCc-----ccccccccccccccccC
Q 001826 61 TKVRDTFFKFFEDKNHVNWKSSPVVPVNDPTL--LFANAGMNQYKP-IFLGTADPNTQ-----LSKLTRACNTQKCIRAG 132 (1009)
Q Consensus 61 ~eiR~~fl~fF~~~gH~~v~s~slvp~~dptl--lftnAGm~qfk~-~flg~~~p~~~-----~~~~~r~~~~QkCiR~g 132 (1009)
+.|-+.+-+||.++|-..|..=-|++...+.. .++..=- ..+. ++|-++ |.-- .+...|+-...+|.|.
T Consensus 5 s~i~~~iR~f~~~~gfiEV~TP~L~~~~~~g~~~f~~~~~~-~~~~~~~L~~S-pql~lk~ll~~g~~~v~~i~~~fR~- 81 (280)
T cd00777 5 SRVIKAIRNFLDEQGFVEIETPILTKSTPEGARDFLVPSRL-HPGKFYALPQS-PQLFKQLLMVSGFDRYFQIARCFRD- 81 (280)
T ss_pred HHHHHHHHHHHHHCCCEEEeCCeeecCCCCCCCCceecccc-CCCceeecccC-HHHHHHHHHhcCcCcEEEeccceeC-
Confidence 46778888999999999885433333222221 1111100 0011 123322 1100 1235688888999997
Q ss_pred CCCCCCCCCCCCCCccccccccccc-ccccccHHHHHHHHHHHcc
Q 001826 133 GKHNDLDDVGKDTYHHTFFEMLGNW-SFGDYFKNEAIEWAWELLT 176 (1009)
Q Consensus 133 GkhnDld~VG~t~rH~TfFEMlGn~-SfgdYfK~eai~~awe~lt 176 (1009)
|+++ ++||. =|.|++-- +|.|| ++.++..=+++.
T Consensus 82 ------e~~~-~~r~~-Ef~~~e~e~~~~~~--~dlm~~~e~li~ 116 (280)
T cd00777 82 ------EDLR-ADRQP-EFTQIDIEMSFVDQ--EDIMSLIEGLLK 116 (280)
T ss_pred ------CCCC-CCccc-eeEEeEeeeccCCH--HHHHHHHHHHHH
Confidence 3344 55665 78887544 77787 556666555554
No 59
>TIGR00462 genX lysyl-tRNA synthetase-like protein GenX. Many Gram-negative bacteria have a protein closely homologous to the C-terminal region of lysyl-tRNA synthetase (LysS). Multiple sequence alignment of these proteins with the homologous regions of collected LysS proteins shows that these proteins form a distinct set rather than just similar truncations of LysS. The protein is termed GenX after its designation in E. coli. Interestingly, genX often is located near a homolog of lysine-2,3-aminomutase. Its function is unknown.
Probab=27.58 E-value=73 Score=36.33 Aligned_cols=114 Identities=17% Similarity=0.249 Sum_probs=68.3
Q ss_pred hHHHHHHHHhhhhCCCeeecCCCCccCCCCCccccccccccc-----------ccccccccCCC----Cccccccccccc
Q 001826 61 TKVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFANAGMNQY-----------KPIFLGTADPN----TQLSKLTRACNT 125 (1009)
Q Consensus 61 ~eiR~~fl~fF~~~gH~~v~s~slvp~~dptllftnAGm~qf-----------k~~flg~~~p~----~~~~~~~r~~~~ 125 (1009)
+.|-+.+-+||.++|-.-|..--+.+.. -+.+|-.+| ++.+|-+++-- --.+.+.|+-..
T Consensus 5 s~i~~~ir~~f~~~gF~EV~TP~l~~~~-----~~e~~~~~F~~~y~~~~~~~~~~yL~~Spql~lk~ll~~g~~rVfei 79 (304)
T TIGR00462 5 ARLLAAIRAFFAERGVLEVETPLLSPAP-----VTDPHLDAFATEFLGPDGEGRPLYLQTSPEYAMKRLLAAGSGPIFQI 79 (304)
T ss_pred HHHHHHHHHHHHHCCCEEEECCeEecCC-----CCCcCCcceeeeccCCCCCCcceeeecCHHHHHHHHHhccCCCEEEE
Confidence 4677889999999999988655555421 111233333 34555443210 001236788888
Q ss_pred ccccccCCCCCCCCCCCCCCCcccccccccc-cccccccHHHHHHHHHHHcccccC-CCCCceEEEE
Q 001826 126 QKCIRAGGKHNDLDDVGKDTYHHTFFEMLGN-WSFGDYFKNEAIEWAWELLTKVYR-LPADRLYATY 190 (1009)
Q Consensus 126 QkCiR~gGkhnDld~VG~t~rH~TfFEMlGn-~SfgdYfK~eai~~awe~lt~~l~-i~~~rL~vT~ 190 (1009)
-||+|+. .+ +.||.+=|-||=- ++|.|| ++.++..=+++..++. +.+.--.+||
T Consensus 80 gp~FRaE-------~~--~~rHl~EFtmLE~e~~~~d~--~d~m~~~e~li~~i~~~~~~~~~~it~ 135 (304)
T TIGR00462 80 CKVFRNG-------ER--GRRHNPEFTMLEWYRPGFDY--HDLMDEVEALLQELLGDPFAPWERLSY 135 (304)
T ss_pred cCceeCC-------CC--CCCcccHHHhHHHHHHcCCH--HHHHHHHHHHHHHHHHhcCCCcEEEEH
Confidence 9999984 34 4699999999833 356676 6677777776655543 2222223576
No 60
>PRK11070 ssDNA exonuclease RecJ; Provisional
Probab=25.88 E-value=6.8e+02 Score=31.35 Aligned_cols=89 Identities=11% Similarity=-0.026 Sum_probs=50.4
Q ss_pred EEEEEeccCCCHHHHHHHHHHHHhccCCcEEEEEEeCCCCeEEEEEeeCCCcccccCccHHHHHHHHH----hhcCCccC
Q 001826 894 FCISRVEVGLDAAAVREAVLKVIEQKGMPVMVFSTDETTNKAVVCAGVPEKSDQSKQLEVSEWLTAAL----QPLKGRCG 969 (1009)
Q Consensus 894 ~iv~~~~~~~d~~~L~~~a~~l~~~~~~~vvll~~~~~~~k~~~~~~v~~~~~~~~~~~A~~~~k~v~----~~lgGkGG 969 (1009)
++|..-+ +-....+--+|.++.+..+.++++++..+ ++.. -++..+ -.++|+.+.++... ..+-.-||
T Consensus 355 ~ivv~~~-~wh~GViGIVAsrl~e~y~rP~ivls~~~-~g~~---kGS~RS---i~g~~l~~aL~~~~~~~~~ll~~fGG 426 (575)
T PRK11070 355 GLAMYHP-EWHQGVVGILASRIKERFHRPVIAFAPAG-DGTL---KGSGRS---IQGLHMRDALERLDTLYPGLILKFGG 426 (575)
T ss_pred EEEEEeC-CCCccHHHHHHHHHHHHHCCCEEEEEEcC-CCeE---EEEEeC---CCCCcHHHHHHHhhhcccchhhccCC
Confidence 4444433 44566788888999996677888887532 2321 222221 13689998888764 24443333
Q ss_pred CCCCCCeeeeccCCcccccccchhhh
Q 001826 970 KGKGGLASGQVSGFYMGYKYKLPKSC 995 (1009)
Q Consensus 970 ~Gk~~~AQG~g~~~~~~~~~~l~~~~ 995 (1009)
.+++.|-......+.++.+.+
T Consensus 427 -----H~~AaG~ti~~e~l~~f~~~l 447 (575)
T PRK11070 427 -----HAMAAGLSLEEDKFELFQQRF 447 (575)
T ss_pred -----hHHhCcceeCHHHHHHHHHHH
Confidence 234455445555555555554
No 61
>cd00776 AsxRS_core Asx tRNA synthetase (AspRS/AsnRS) class II core domain. Assignment to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure and the presence of three characteristic sequence motifs in the core domain. This family includes AsnRS as well as a subgroup of AspRS. AsnRS and AspRS are homodimers, which attach either asparagine or aspartate to the 3'OH group of ribose of the appropriate tRNA. While archaea lack asnRS, they possess a non-discriminating aspRS, which can mischarge Asp-tRNA with Asn. Subsequently, a tRNA-dependent aspartate amidotransferase converts the bound aspartate to asparagine. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate.
Probab=24.83 E-value=39 Score=38.78 Aligned_cols=28 Identities=32% Similarity=0.366 Sum_probs=24.1
Q ss_pred CcccccccHHHHHHHHcCCCCCcccccc
Q 001826 288 KHVDTGLGFERLTSILQNKMSNYDTDVF 315 (1009)
Q Consensus 288 ~~IDTGmGlERl~~vlqg~~snydtdlf 315 (1009)
+|==-|||+|||++++-|..+.=|+-+|
T Consensus 290 p~~G~giGidRL~m~~~g~~~Irdv~~F 317 (322)
T cd00776 290 PHGGFGLGLERLVMWLLGLDNIREAILF 317 (322)
T ss_pred CCceeeEhHHHHHHHHcCCCchheEeec
Confidence 5778899999999999999998777555
No 62
>TIGR00462 genX lysyl-tRNA synthetase-like protein GenX. Many Gram-negative bacteria have a protein closely homologous to the C-terminal region of lysyl-tRNA synthetase (LysS). Multiple sequence alignment of these proteins with the homologous regions of collected LysS proteins shows that these proteins form a distinct set rather than just similar truncations of LysS. The protein is termed GenX after its designation in E. coli. Interestingly, genX often is located near a homolog of lysine-2,3-aminomutase. Its function is unknown.
Probab=24.07 E-value=41 Score=38.31 Aligned_cols=24 Identities=25% Similarity=0.224 Sum_probs=19.7
Q ss_pred cccccccHHHHHHHHcCCCCCccc
Q 001826 289 HVDTGLGFERLTSILQNKMSNYDT 312 (1009)
Q Consensus 289 ~IDTGmGlERl~~vlqg~~snydt 312 (1009)
|==-|+|+|||++++-|.+|.=|+
T Consensus 278 ~~G~GiGieRL~m~l~g~~~Ir~v 301 (304)
T TIGR00462 278 CSGVALGVDRLLMLALGADSIDDV 301 (304)
T ss_pred CCceEEcHHHHHHHHhCCCchhhc
Confidence 555699999999999998876554
No 63
>PF01343 Peptidase_S49: Peptidase family S49 peptidase classification.; InterPro: IPR002142 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S49 (protease IV family, clan S-). The predicted active site serine for members of this family occurs in a transmembrane domain. The domain defines sequences in viruses, archaea, bacteria and plants. These sequences are variously annotated in the different taxonomic groups, examples are: Viruses: capsid protein Archaea: proteinase IV homolog Bacteria: proteinase IV, sohB, SppA, pfaP, putative protease Plants: SppA, protease IV This group also contains proteins classified as non-peptidase homologues that either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity of peptidases. Related proteins, non-peptidase homologs and unclassified S49 members are also to be found in IPR002810 from INTERPRO.; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 3RST_B 3BEZ_D 3BF0_A.
Probab=21.92 E-value=93 Score=31.62 Aligned_cols=68 Identities=18% Similarity=0.271 Sum_probs=51.1
Q ss_pred hcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCCCCChhhhhh--hhccCCCChHHHHHHHHHcCc
Q 001826 418 QREAHIREIIAAEEASFGKTLLKGIEKFKKAAQDV-QGKVLSGQDAFI--LWDTYGFPLDLTQLMAEERGL 485 (1009)
Q Consensus 418 ~~~~~I~~ii~~Ee~~F~~tl~~g~~~l~~~~~~~-~~~~l~g~~af~--LydtyGfP~dlt~~~a~e~g~ 485 (1009)
+.++.+++.++.-...|...+.+++.+=...++.. ....+++++|.+ |-|..|..-|+...++++.|+
T Consensus 83 ~~r~~~~~~l~~~~~~f~~~Va~~R~~~~~~v~~~~~~~~~~~~~A~~~GLiD~i~~~~~~~~~l~~~~~v 153 (154)
T PF01343_consen 83 EERENLQELLDELYDQFVNDVAEGRGLSPDDVEEIADGGVFTAQQALELGLIDEIGTFDEAIARLAKLAGV 153 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTS-HHHHHCHHCCHEEEHHHHHHTTSSSEETSHHHHHHHHHHHCHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHhhccccHHHHHHcCchhhcCCHHHHHHHHHHHcCC
Confidence 35678999999999999999999986443333332 256788888776 778888888888888877665
No 64
>PF00152 tRNA-synt_2: tRNA synthetases class II (D, K and N) ; InterPro: IPR004364 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry includes the asparagine, aspartic acid and lysine tRNA synthetases.; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 1N9W_B 1BBU_A 1BBW_A 4EX5_B 3E9I_A 3E9H_C 3A74_C 1NNH_A 3M4P_C 3M4Q_B ....
Probab=21.75 E-value=51 Score=37.86 Aligned_cols=104 Identities=17% Similarity=0.291 Sum_probs=54.6
Q ss_pred hHHHHHHHHhhhhCCCeeecCCCCccCCCCC--ccccccc--cccc-ccccccccCCCC---c-cccccccccccccccc
Q 001826 61 TKVRDTFFKFFEDKNHVNWKSSPVVPVNDPT--LLFANAG--MNQY-KPIFLGTADPNT---Q-LSKLTRACNTQKCIRA 131 (1009)
Q Consensus 61 ~eiR~~fl~fF~~~gH~~v~s~slvp~~dpt--llftnAG--m~qf-k~~flg~~~p~~---~-~~~~~r~~~~QkCiR~ 131 (1009)
+.|-+.+-+||.++|...|..--+++...+. =.|..-. ..-| +|+||-+++--+ - .+++.|+-...+|+|.
T Consensus 26 s~i~~~ir~ff~~~~f~Ev~tP~l~~~~~~~~~~~F~v~~~~~~~~~~~~~L~~Spql~~k~ll~~g~~~vf~i~~~FR~ 105 (335)
T PF00152_consen 26 SAILQAIREFFDKRGFIEVDTPILTSSTCEGGAEPFSVDSEPGKYFGEPAYLTQSPQLYLKRLLAAGLERVFEIGPCFRN 105 (335)
T ss_dssp HHHHHHHHHHHHHTT-EEE---SEESSSSSSSSCSEEEEESTTEETTEEEEE-SSSHHHHHHHHHTTHSEEEEEEEEE-B
T ss_pred HHHHHHHHHHHHhCCceEEcCceeeccccCccccccccccchhhhcccceecCcChHHHHhhhccccchhhhheecceec
Confidence 4677888899999999998655555532222 2333321 0011 345554432100 0 0125666677999997
Q ss_pred CCCCCCCCCCCCCCCcccccccc-cccccccccHHHHHHHHHHH
Q 001826 132 GGKHNDLDDVGKDTYHHTFFEML-GNWSFGDYFKNEAIEWAWEL 174 (1009)
Q Consensus 132 gGkhnDld~VG~t~rH~TfFEMl-Gn~SfgdYfK~eai~~awe~ 174 (1009)
. +. .|.||..=|-|| --.+|.||.. .|+.+-++
T Consensus 106 E-------~~-~~~rHl~EFtmLE~e~a~~~~~~--lm~~~e~l 139 (335)
T PF00152_consen 106 E-------ES-RTRRHLPEFTMLEWEMAFADYDD--LMDLIEEL 139 (335)
T ss_dssp S-------SS-CBTTBSSEEEEEEEEEETSSHHH--HHHHHHHH
T ss_pred c-------Cc-ccccchhhhhhhhhccccCcHHH--hHHHHHHH
Confidence 3 22 589999888887 3445677643 44444443
No 65
>PLN02850 aspartate-tRNA ligase
Probab=21.13 E-value=49 Score=40.72 Aligned_cols=29 Identities=24% Similarity=0.351 Sum_probs=24.6
Q ss_pred CcccccccHHHHHHHHcCCCCCccccccH
Q 001826 288 KHVDTGLGFERLTSILQNKMSNYDTDVFM 316 (1009)
Q Consensus 288 ~~IDTGmGlERl~~vlqg~~snydtdlf~ 316 (1009)
+|==-|+|||||++++-|.+|.=|+-+|.
T Consensus 494 PhgG~GiGlERLvM~l~g~~nIr~v~~FP 522 (530)
T PLN02850 494 PHGGFGVGLERVVMLFCGLNNIRKTSLFP 522 (530)
T ss_pred CCceEEEcHHHHHHHHcCCCchheEeecC
Confidence 45678999999999999999988886664
No 66
>PRK03968 DNA primase large subunit; Validated
Probab=20.96 E-value=4.4e+02 Score=31.06 Aligned_cols=78 Identities=22% Similarity=0.333 Sum_probs=48.6
Q ss_pred cccccccHHHHHHHHcCC-CCCccccccHHHHHHHH-----HHhCCCCCCCCCCCCccccccchhhhhhhhhhhh-----
Q 001826 289 HVDTGLGFERLTSILQNK-MSNYDTDVFMPIFDAIQ-----QATGARPYSGKVGADDADKVDMAYRVVADHIRTL----- 357 (1009)
Q Consensus 289 ~IDTGmGlERl~~vlqg~-~snydtdlf~pli~~i~-----~~~~~~~y~g~~~~~~~~~~~~~~rviaDH~R~~----- 357 (1009)
-+|.-.++||+-|.++|+ ..+|+.+-+.-+++-+. ...+.++|+-.. .--.+...+++.|.+|-.
T Consensus 34 ~i~VerAiERVk~ALegk~~~~~~~~~~~yl~Dl~~Fy~L~~A~af~~~~~E~----~lv~e~~~~i~~~Rl~~~~~~~~ 109 (399)
T PRK03968 34 LVDIELAIERVKWYLEKKPEKNFDHSDYEYLFDLLSFYALLGALAFSPYGREA----ELVVESNGKIYEERLRRAKEIEE 109 (399)
T ss_pred hhHHHHHHHHHHHHHcCCccccCCHHHHHHHHHHHHHHHHHHHhccCCCCcch----hHHHHhhhHHHHHHHHHhccccc
Confidence 566789999999999999 88999988885554332 222344553211 111123456777777652
Q ss_pred ----eeeecCCCccCCC
Q 001826 358 ----SFAIADGSCPGNE 370 (1009)
Q Consensus 358 ----~~~i~DGv~Psn~ 370 (1009)
+-...++-+|-+.
T Consensus 110 ~~~~~~~~~~~e~p~~d 126 (399)
T PRK03968 110 TEIPVKVVNAIEIPEKD 126 (399)
T ss_pred ccccccccccccccchh
Confidence 2344566677776
No 67
>cd00775 LysRS_core Lys_tRNA synthetase (LysRS) class II core domain. Class II LysRS is a dimer which attaches a lysine to the 3' OH group of ribose of the appropriate tRNA. Its assignment to class II aaRS is based upon its structure and the presence of three characteristic sequence motifs in the core domain. It is found in eukaryotes as well as some prokaryotes and archaea. However, LysRS belongs to class I aaRS's in some prokaryotes and archaea. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate.
Probab=20.70 E-value=1.4e+02 Score=34.46 Aligned_cols=99 Identities=17% Similarity=0.357 Sum_probs=61.6
Q ss_pred hHHHHHHHHhhhhCCCeeecCCCCccCCCCCccccccccccc--------ccccccccCCCC---c-ccccccccccccc
Q 001826 61 TKVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFANAGMNQY--------KPIFLGTADPNT---Q-LSKLTRACNTQKC 128 (1009)
Q Consensus 61 ~eiR~~fl~fF~~~gH~~v~s~slvp~~dptllftnAGm~qf--------k~~flg~~~p~~---~-~~~~~r~~~~QkC 128 (1009)
++|-+.+-+||.++|-.-|..--+++...+ |+...| ++.+|-+++.-+ - .+.+.|+-...+|
T Consensus 12 s~i~~~iR~ff~~~gf~EV~TP~L~~~~~~------~~~~~f~~~~~~~~~~~yL~~Spql~~k~ll~~g~~~vf~i~~~ 85 (329)
T cd00775 12 SKIISYIRKFLDDRGFLEVETPMLQPIAGG------AAARPFITHHNALDMDLYLRIAPELYLKRLIVGGFERVYEIGRN 85 (329)
T ss_pred HHHHHHHHHHHHHCCCEEEECCccccCCCC------ccceeEEeccCCCCcceeeccCHHHHHHHHHhcCCCcEEEEecc
Confidence 467788899999999998865555543222 222233 344554432100 0 1246788889999
Q ss_pred cccCCCCCCCCCCCCCCCcccccccccc-cccccccHHHHHHHHHHHcc
Q 001826 129 IRAGGKHNDLDDVGKDTYHHTFFEMLGN-WSFGDYFKNEAIEWAWELLT 176 (1009)
Q Consensus 129 iR~gGkhnDld~VG~t~rH~TfFEMlGn-~SfgdYfK~eai~~awe~lt 176 (1009)
+|+ |+++ .||++=|-||=- .+|.|| +|.++.+=+++.
T Consensus 86 FR~-------E~~~--~rHl~EFt~le~e~~~~~~--~~~m~~~e~li~ 123 (329)
T cd00775 86 FRN-------EGID--LTHNPEFTMIEFYEAYADY--NDMMDLTEDLFS 123 (329)
T ss_pred ccC-------CCCC--CCCCCceEEEEEeeecCCH--HHHHHHHHHHHH
Confidence 997 3344 699999999843 566676 556555555544
No 68
>PTZ00425 asparagine-tRNA ligase; Provisional
Probab=20.05 E-value=55 Score=40.70 Aligned_cols=29 Identities=38% Similarity=0.465 Sum_probs=25.2
Q ss_pred CcccccccHHHHHHHHcCCCCCccccccH
Q 001826 288 KHVDTGLGFERLTSILQNKMSNYDTDVFM 316 (1009)
Q Consensus 288 ~~IDTGmGlERl~~vlqg~~snydtdlf~ 316 (1009)
+|=--|||||||++.+-|.++.=|+-+|.
T Consensus 550 PhgGfGLGiERLvm~ltGl~nIRDvi~FP 578 (586)
T PTZ00425 550 PHAGFGLGFERLIMLVTGVDNIKDTIPFP 578 (586)
T ss_pred CCceEEEcHHHHHHHHcCCCchheEEECc
Confidence 67788999999999999999988885654
Done!