Query 001826
Match_columns 1009
No_of_seqs 294 out of 2156
Neff 6.1
Searched_HMMs 29240
Date Tue Mar 26 17:13:05 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/001826.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1121-1125//hhsearch_pdb/001826hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2zze_A Alanyl-tRNA synthetase; 1.0 1 1 1643.2 46.2 635 54-799 53-752 (752)
2 2ztg_A Alanyl-tRNA synthetase; 1.0 1 1 1540.2 43.5 624 54-799 56-738 (739)
3 1yfs_A Alanyl-tRNA synthetase; 1.0 1 1 1370.9 24.7 425 57-509 2-431 (465)
4 3hy0_A Alanyl-tRNA synthetase; 1.0 1 1 1365.2 28.7 424 58-506 2-438 (441)
5 3kew_A DHHA1 domain protein; s 1.0 1 1 420.1 22.9 226 538-804 9-234 (241)
6 2e1b_A PH0108, 216AA long hypo 1.0 1 1 380.8 17.0 203 538-797 11-215 (216)
7 1nyr_A Threonyl-tRNA synthetas 1.0 1 1 254.4 13.1 230 605-862 41-285 (645)
8 1qf6_A THRRS, threonyl-tRNA sy 1.0 1 1 245.0 17.1 229 605-862 39-285 (642)
9 1tke_A Threonyl-tRNA synthetas 1.0 1 1 215.4 16.0 170 605-799 39-224 (224)
10 1v4p_A Alanyl-tRNA synthetase; 1.0 1 1 199.6 15.5 144 640-799 4-152 (157)
No 1
>2zze_A Alanyl-tRNA synthetase; ligase, hydrolase; HET: MLY; 2.16A {Pyrococcus horikoshii} PDB: 2zzf_A 2zzg_A*
Probab=1.00 E-value=1 Score=1643.21 Aligned_cols=635 Identities=28% Similarity=0.458 Sum_probs=577.6
Q ss_pred CCCCCCHHHHHHHHHHHHHHCC---CEEECCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 7777894699999997542199---83615888755899973311133446654444-6669998666565433335441
Q 001826 54 QVVEWPATKVRDTFFKFFEDKN---HVNWKSSPVVPVNDPTLLFANAGMNQYKPIFL-GTADPNTQLSKLTRACNTQKCI 129 (1009)
Q Consensus 54 ~~~~~~~~eiR~~fl~fF~~~~---H~~v~s~slvp~~d~tllF~nAGm~~fk~~fl-G~~~p~~~~~~~~r~~~~QkCi 129 (1009)
..++|+++|||++||+||++|| |++||||||||+||||||||||||+||||||+ |.++||+ +|+|+|||||
T Consensus 53 ~~~~~~~~eiR~~fl~fF~~kg~~~H~~v~s~~lvp~~dptllftnAGm~~fk~~f~~G~~~pp~-----~r~~~~QkCi 127 (752)
T 2zze_A 53 IPRXYTLDEMREXFLRFFEXHEIYPHGRVXRYPVLPRWRDDVLLVGASIMDFQPWVISGEADPPA-----NPLVISQPSI 127 (752)
T ss_dssp SSSCCCHHHHHHHHHHHHHTCSSSCCEECCCCCSSCTTCSSCSSCCSGGGGGTTHHHHTSSCCSS-----SSEEEEEEEE
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCEEEEECCHHHHHHHHCCCCCCCCC-----CCCCCCCCCE
T ss_conf 34668999999999999731688760378435765689998024304534403766088768999-----8704554541
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-----CCCHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCCCCCCHH
Q ss_conf 2489889877878788853000002565444-----33389899999987110138899962999977997689999578
Q 001826 130 RAGGKHNDLDDVGKDTYHHTFFEMLGNWSFG-----DYFKNEAIEWAWELLTKVYRLPADRLYATYFGGDEKAGLAPDNE 204 (1009)
Q Consensus 130 R~gGkhnDld~VG~t~rHhTfFEMlGn~SFg-----dYfK~eai~~awe~Lt~~l~l~~~rL~vT~~~~~~~~~~~~D~E 204 (1009)
|+ |||||||+|+||||||||||||||| ||||+|||.|||||||++||||++||+ +
T Consensus 128 R~----~DlenVG~t~rHhTfFEMlGnfSFg~~~~~dYfK~eaI~~awe~lT~~~gl~~~ri~--~-------------- 187 (752)
T 2zze_A 128 RF----TDIDNVGITGRHFTIFEMMAHHAFNYPGXPIYWMDETVELAFEFFTKELXMXPEDIT--F-------------- 187 (752)
T ss_dssp CC----TTGGGTTTSSSCCSEEEEEEEEEEECTTCCCCCHHHHHHHHHHHHHHTSCCCGGGEE--E--------------
T ss_pred EC----CCHHHCCCCCCCHHHHHHCCCCEECCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHEE--E--------------
T ss_conf 24----767544888862467885754230797167778888999999997436414631232--3--------------
Q ss_pred HHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEEECCCCC----------
Q ss_conf 9999883099997336888778645799788868646775147998877778899996479831001122----------
Q 001826 205 ARDIWLKFLPASRVLPFGCKDNFWEMGDTGPCGPCSEIHYDRTGNRDAASLVNNDDPTCIEIWNIVFIQF---------- 274 (1009)
Q Consensus 205 ~~~iW~~~~~~~~i~~~~~~dNfW~mG~~GpcGPCsEi~yd~~~~~~~~~~~~~~~~~~lEiwNlVFmq~---------- 274 (1009)
+||||+|| |||||||||||| | |||||||||||
T Consensus 188 -------------------~dNfW~~G--GpcGPcsEI~~d---g--------------lEiwNlVFmq~~~~~~~~~~~ 229 (752)
T 2zze_A 188 -------------------KENPWAGG--GNAGPAFEVLYR---G--------------LEVATLVFMQYXXAPENAPQD 229 (752)
T ss_dssp -------------------EECCEEET--TEEECEEEEEET---T--------------EEEEEEEEEEEEECCTTCCSC
T ss_pred -------------------CCCCCCCC--CCCCCCEEEEEC---C--------------EEEEEEEEEEECCCCCCCCCC
T ss_conf -------------------25733479--898885468778---7--------------751300001211454443231
Q ss_pred ---CCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCC-----------CCCCCCCCCCC
Q ss_conf ---3389995356998956556318999998809999752223099999999994999-----------88897899861
Q 001826 275 ---NRESDGSLKPLPAKHVDTGLGFERLTSILQNKMSNYDTDVFMPIFDAIQQATGAR-----------PYSGKVGADDA 340 (1009)
Q Consensus 275 ---~~~~~g~l~~L~~~~iDtGmGlERl~~vlqg~~snydtd~f~pli~~i~~~~~~~-----------~y~~~~~~~~~ 340 (1009)
|| .+|+|.|||+||||||||||||+|||||++||||| +|.|||++|++++|+. +|.|.++.++.
T Consensus 230 ~~~~~-~~g~~~~Lp~~~IDTGmGlERl~~vlQg~~snydt-~f~pii~~~~~~~g~~y~~~~~~~~~a~~~g~~~~~~~ 307 (752)
T 2zze_A 230 QVVVI-XGEKYIPMETXVVDTGYGLERLVWMSQGTPTAYDA-VLGYVVEPLXXMAGIEKIDEKILMENSRLAGMFDIEDL 307 (752)
T ss_dssp CEEET-TTEEEEEEEEEEEEEEEEHHHHHHHHHCCSSHHHH-HSHHHHHHHHHHHTCCCCCHHHHHHHHHHHHTCCSSSS
T ss_pred CHHCC-CCCEEEECCCCCCCCCCCHHHHHHHHCCCCCHHHH-HHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCH
T ss_conf 01113-69825357754304663799999998189965998-89999999997608875520233221000356784320
Q ss_pred CCC------------------------CCHHHHHHHHHHHHEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 011------------------------11233202111131001218985589896347799999999997766099864
Q 001826 341 DKV------------------------DMAYRVVADHIRTLSFAIADGSCPGNEGREYVLRRILRRAVRYGSEVLKAQDG 396 (1009)
Q Consensus 341 ~~~------------------------~~a~rviaDH~R~~~~~i~DG~~Psn~grgYvlRrilRRa~~~~~~~lg~~~~ 396 (1009)
+.+ +.++||||||+||++|||+||++|||+|||||||||||||+|+++ .||++.|
T Consensus 308 ~~~~~~~~~va~~~~~~~~~~~~~~~~~~~~rvIaDH~R~~~f~i~DGv~PsN~GrGYvlRrilRRa~r~~~-~lg~~~~ 386 (752)
T 2zze_A 308 GDLRYLREQVAKRVGITVEELEKAIRPYELIYAIADHTKALTFMLADGVVPSNVXAGYLARLLIRKSIRHLR-ELGLEVP 386 (752)
T ss_dssp SCHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSSSHHHHHHHHHHHHHHHHHH-HTTCCCC
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHCCCCCEEEEEHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH-HHCCCCC
T ss_conf 048999998877517777887653055312788622455346310267776752215899999999999999-8489956
Q ss_pred HHHHHHHHHHHHHCCCCHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCCCHHHHHHHHCCCCCCH
Q ss_conf 022479999999301384668609999999999999999999999999999998622---99888144343004679996
Q 001826 397 FFNGLVNIVVKVMGDVFPELKQREAHIREIIAAEEASFGKTLLKGIEKFKKAAQDVQ---GKVLSGQDAFILWDTYGFPL 473 (1009)
Q Consensus 397 fl~~lv~~v~~~~~~~ypel~~~~~~I~~ii~~Ee~~F~~tl~~G~~~l~~~~~~~~---~~~isg~~af~LydTyGfP~ 473 (1009)
|++||+++++.|++.||||.++++.|++||+.||++|.+||++|+++|++++++++ .++|||++||+||||||||+
T Consensus 387 -l~~lv~~~~~~m~~~ypel~~~~~~I~~vi~~EE~~F~~Tl~~G~~~l~~~~~~~~~~~~~~l~g~~af~LyDTyGfP~ 465 (752)
T 2zze_A 387 -LSEIVALHIXELHKTFPEFXEMEDIILEMIELEEKXYAETLRRGSDLVRREIAKLKKKGIKEIPVEXLVTFYESHGLTP 465 (752)
T ss_dssp -HHHHHHHHHHHHTTTCTHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSCCCHHHHHHHHHHHCCCH
T ss_pred -HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCH
T ss_conf -6688999998763006556666999999999999999999999999999999986643787567788888876159998
Q ss_pred HHHHHHHHHCCCEECHH-HHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCC--CCEEEEEEEE
Q ss_conf 77999998809300854-29999999999968631002588521336688998532888866556766--3201218999
Q 001826 474 DLTQLMAEERGLLVDIE-GFNNAMDEARERSRSAQNKQAGGAIVMDADATAALHKRGVLATDDSFKFI--WFQDHKSVIK 550 (1009)
Q Consensus 474 dlt~~~a~e~g~~vD~~-~f~~~~~~~~~~sr~~~~~~~~~~~~~~~~~~~~l~~~~~~~T~~~~~Y~--~~~~~~a~Vl 550 (1009)
|||++||+|+|++||++ +|+++|++||+++|++.. ... .+ ...+ ...|+|+ +.+|+ |.++++|+|+
T Consensus 466 dlt~~ia~e~g~~vd~~~~F~~~m~~q~~~~r~~~~--~~~---~~---~~~~--~~~~~T~-~l~Y~~~yl~~~~a~Vl 534 (752)
T 2zze_A 466 EIVXEIAEKEGVKVNIPDNFYSMVAKEAERTKEEKG--EEL---VD---FELL--KDLPDTR-RLYYEDPFMXEFDAXVL 534 (752)
T ss_dssp HHHHHHHTTSSCCCCCCTTHHHHHHGGGGCC---------C---CC---SSSS--SSSCCCE-EHHHHCTTCCEEEEEEE
T ss_pred HHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCC--CCC---HH---HHHH--CCCCCCE-EECCCCCCCCEEEEEEE
T ss_conf 999999998598237755599999999999763544--640---24---6775--0478852-53256786555889999
Q ss_pred EEEECCEEEEEECCCCEEEEEECCCCCCCCCCCCCCCEEEEECCCCCEEEEEEEEECCEEEEEEEEECCCCCCCCCCEEE
Q ss_conf 99948814432039984999925666634899988871799835510899959997999999998523555478999899
Q 001826 551 AIYTGSEFIESVVPGNEVGIVLASSSFYAEQGGQIFDEGFIEGLFGSFYVRNVQIYGGFVIHIGSLTEGAGRFSVGEEVI 630 (1009)
Q Consensus 551 ~i~~~~~~~~~~~~~~~~~ivLD~T~FYpegGGQ~~D~G~I~~~~~~~~V~dv~~~~g~i~H~~~~~~~~~~l~~G~~V~ 630 (1009)
++.. .+|+||+|||||||||||+|+|+|..++..+.|.||++.+|.++|.+.. . +.+.+|+.|.
T Consensus 535 ~i~~-------------~~VVLD~TpFYpEgGGQ~~D~G~I~~~g~~~~V~dv~k~~g~ivH~~~~-~--~~l~vGd~V~ 598 (752)
T 2zze_A 535 RVIX-------------DWVILDATAFYPEGGGQPYDTGVLIVNGREVXVTNVQXVGXVIIHXVED-P--GAFXEGMIVH 598 (752)
T ss_dssp EEET-------------TEEEESEECSCCSBTTBCCCCEEEEETTEEEEEEEEEEETTEEEEEESC-G--GGCCTTCEEE
T ss_pred EEEC-------------CEEEEECCCCCCCCCCCCCCEEEEEECCEEEEEEEEEECCCEEEEECCC-C--CCCCCCCEEE
T ss_conf 9981-------------7899828987888899999879997598899998611048589995366-6--7667698699
Q ss_pred EEEEHHHHHHHHHHCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 99802333334212149999999999881994001244212996699805999999879999999999999818987999
Q 001826 631 CKVDYDRRKLIAPNHTCTHMLNFALREVLGDHVDQKGSVVLPEKLRFDFSHGKPVDPEHLRRIESIVNEQIKAELDVFSK 710 (1009)
Q Consensus 631 ~~VD~~rR~~~m~~HTAtHLL~aALr~vlg~~v~q~Gs~v~~d~lr~Df~~~~~lt~eeL~~IE~~vNe~I~~~~pV~~~ 710 (1009)
+.|||+||+.+|++|||+|||++|++++||.+++|+|+++.++++||||+++.+++++++.+||+.||++|++++||++.
T Consensus 599 ~~VD~~rR~~~mr~HTAtHLL~~ALr~vlG~~v~q~Gs~v~~d~~rfDFs~~~~lt~edL~~IE~~vNeiI~~nlpV~~~ 678 (752)
T 2zze_A 599 GXIDWXRRIQHMRHHTGTHVLMGALVRVLGRHVWQAGSQLTTDWARLDISHYXRISEEELXEIEMLANRIVMEDRXVTWE 678 (752)
T ss_dssp EEECHHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEEECSSCEEEEEECSSCCCHHHHHHHHHHHHHHHHHTCBEEEE
T ss_pred EEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCEE
T ss_conf 99807888899998489999999999873875166347545782499972787777778999999999999818863023
Q ss_pred ECCHHHHHCCCCCHHHC--CCCCCCCEEEEEECCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCEEEEEECCCCC
Q ss_conf 92988896001701111--7758998799994666200025978875540468520687856622456589953103468
Q 001826 711 EATLAEAKCINGLRAVF--GEVYPDPVRVVAIGRKVEDLLADPENKEWLSISAELCGGTHLSNTREAEAFALLSEEGIAK 788 (1009)
Q Consensus 711 ~~~~eeA~~~~g~~~~f--~e~y~d~VRVV~Ig~~~~~~~~~~~~~~~~~~d~e~CgGTHV~nTgeIg~fkI~~~~~v~~ 788 (1009)
++++++|.++.+. ++| +++|.+.||||+|| ++|+++||||||+||++||.|+|++++++++
T Consensus 679 ~~s~eEA~~~~~~-~lf~~ge~ygd~VRVV~IG----------------d~svelCGGTHV~nTgeIG~fKIls~s~i~~ 741 (752)
T 2zze_A 679 WLPRTTAEQXYGF-RLYQGGVVPGREIRVVXIE----------------DWDVQACGGTHLPSTGLVGPIXILRTERIQD 741 (752)
T ss_dssp EEEHHHHHHHHCG-GGCSSCCCCSSEEEEEEET----------------TTEEEECCSCCCSBGGGGCCEEEEEEEEEET
T ss_pred ECCHHHHHHCCHH-HHHCCCCCCCCEEEEEEEC----------------CCEECCCCCCCCCCHHHCCEEEEEEEEEECC
T ss_conf 1578887540226-6512789989838999979----------------9412799997667876756789999999739
Q ss_pred CCEEEEEECCH
Q ss_conf 83699998043
Q 001826 789 GIRRITAVTTG 799 (1009)
Q Consensus 789 Gi~RI~~vtG~ 799 (1009)
|++||+++||.
T Consensus 742 GvrRIeavtG~ 752 (752)
T 2zze_A 742 GVERIIFACGE 752 (752)
T ss_dssp TEEEEEEEECC
T ss_pred CEEEEEEEECC
T ss_conf 97999999487
No 2
>2ztg_A Alanyl-tRNA synthetase; class-II aminoacyl-tRNA synthetase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: A5A; 2.20A {Archaeoglobus fulgidus}
Probab=1.00 E-value=1 Score=1540.22 Aligned_cols=624 Identities=28% Similarity=0.461 Sum_probs=566.7
Q ss_pred CCCCCCHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 777789469999999754219983615888755899973311133446654444-6669998666565433335441248
Q 001826 54 QVVEWPATKVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFANAGMNQYKPIFL-GTADPNTQLSKLTRACNTQKCIRAG 132 (1009)
Q Consensus 54 ~~~~~~~~eiR~~fl~fF~~~~H~~v~s~slvp~~d~tllF~nAGm~~fk~~fl-G~~~p~~~~~~~~r~~~~QkCiR~g 132 (1009)
..++|+++|||++|++||++|||+++|||||||+||||||||||||+||||+|+ |..+|++ .|+|++|||||+
T Consensus 56 ~~~~~~~~eir~~f~~ff~~~gh~~~~s~~lvp~~dptllft~agm~~fkp~~~~g~~~p~~-----~~~~~~Q~ciR~- 129 (739)
T 2ztg_A 56 FKKPFELDEMREYYLNFFERRGHGRIERYPVVARWRTDIYLTIASIADFQPFVTSGVAPPPA-----NPLTISQPCIRL- 129 (739)
T ss_dssp SSSCCCHHHHHHHHHHHHHTTTCEECCCCCSBCTTCSSBSBCCSGGGGGTTTTTTSSSCCSS-----SSEEEEEEEECG-
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCEEEECCHHHCCHHHHCCCCCCCC-----CCCCCCCCCCCC-
T ss_conf 67788999999999999987889895886727789997224323722270767089779999-----886455346537-
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCC-----CCCHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCCCCCCHHHHH
Q ss_conf 9889877878788853000002565444-----33389899999987110138899962999977997689999578999
Q 001826 133 GKHNDLDDVGKDTYHHTFFEMLGNWSFG-----DYFKNEAIEWAWELLTKVYRLPADRLYATYFGGDEKAGLAPDNEARD 207 (1009)
Q Consensus 133 GkhnDld~VG~t~rHhTfFEMlGn~SFg-----dYfK~eai~~awe~Lt~~l~l~~~rL~vT~~~~~~~~~~~~D~E~~~ 207 (1009)
|||||||+|+||||||||||||||| ||||+|||.|||||| ++|||||+||. +
T Consensus 130 ---~D~envg~t~rH~tfFeMlgn~sFg~~~~~dYfK~eai~~~~e~l-~~~g~~~~~i~--~----------------- 186 (739)
T 2ztg_A 130 ---DDLDSVGRTGRHLTLFEMMAHHAFNYPGKEIYWKNETVAYCTELL-NELGVKKEDIV--Y----------------- 186 (739)
T ss_dssp ---GGGGGTTTSSSCCSEEEEEEEEEEEBTTBCSCCHHHHHHHHHHHH-HHHTCCGGGCE--E-----------------
T ss_pred ---CCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHH-HHHCCCHHHEE--E-----------------
T ss_conf ---644568877763134411474416898644421999999999999-88198999940--6-----------------
Q ss_pred HHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCC----
Q ss_conf 9883099997336888778645799788868646775147998877778899996479831001122338999535----
Q 001826 208 IWLKFLPASRVLPFGCKDNFWEMGDTGPCGPCSEIHYDRTGNRDAASLVNNDDPTCIEIWNIVFIQFNRESDGSLK---- 283 (1009)
Q Consensus 208 iW~~~~~~~~i~~~~~~dNfW~mG~~GpcGPCsEi~yd~~~~~~~~~~~~~~~~~~lEiwNlVFmq~~~~~~g~l~---- 283 (1009)
+||||+|| |||||||||||| | |||||+|||||||+.+|.|.
T Consensus 187 ----------------~dnfW~~g--Gp~Gpc~Ei~~d---g--------------~EiwnlVfmq~~r~~~g~~~~~~~ 231 (739)
T 2ztg_A 187 ----------------KEEPWAGG--GNAGPCLEAIVG---G--------------LEVATLVFMNLEEHPEGDIEIKGA 231 (739)
T ss_dssp ----------------EEEEEEET--TEEEEEEEEEET---T--------------EEEEEEEEEEEEECTTCCEEETTE
T ss_pred ----------------CCCCCCCC--CCCCCEEEEEEC---C--------------EEEEEEEEEEEEECCCCCEEECCC
T ss_conf ----------------46725578--787870699989---7--------------986423567764058986221676
Q ss_pred ---CCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCC-----------------CCCCCCCCCCCC
Q ss_conf ---699895655631899999880999975222309999999999499988-----------------897899861011
Q 001826 284 ---PLPAKHVDTGLGFERLTSILQNKMSNYDTDVFMPIFDAIQQATGARPY-----------------SGKVGADDADKV 343 (1009)
Q Consensus 284 ---~L~~~~iDtGmGlERl~~vlqg~~snydtd~f~pli~~i~~~~~~~~y-----------------~~~~~~~~~~~~ 343 (1009)
|||+++||||||||||+|+|||++||||| +|.|||++|++++|+. | +|+++.++.+.+
T Consensus 232 ~y~~l~~~~iDtG~GlER~~~~lqg~~s~yd~-~f~pii~~~~~~~g~~-y~~~~~~~~~~~~~~~~~~G~~~~~~~~~i 309 (739)
T 2ztg_A 232 RYRKMDNYIVDTGYGLERFVWASKGTPTVYDA-IFPEVVDTIIDNSNVS-FNREDERVRRIVAESSKLAGIMGELRGERL 309 (739)
T ss_dssp EEEEEEEEEEEEEEEHHHHHHHHHCCSSHHHH-HCHHHHHHHHHTSCCS-SCTTCHHHHHHHHHHHHHHHHHTTCCTHHH
T ss_pred CCCCCCCCEEECCCCHHHHHHHHCCCCCHHHH-HHHHHHHHHHHHHCCC-CCCCCCCHHHHHHHHHHCCCCCCCCCCHHH
T ss_conf 66689998574484999999998499936886-5999999999985998-665653012333221000245675540059
Q ss_pred C------------------------CHHHHHHHHHHHHEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHH
Q ss_conf 1------------------------1233202111131001218985589896347799999999997766099864022
Q 001826 344 D------------------------MAYRVVADHIRTLSFAIADGSCPGNEGREYVLRRILRRAVRYGSEVLKAQDGFFN 399 (1009)
Q Consensus 344 ~------------------------~a~rviaDH~R~~~~~i~DG~~Psn~grgYvlRrilRRa~~~~~~~lg~~~~fl~ 399 (1009)
+ .++||||||+||++|||+||++|||+|||||||||||||+|++ +.||++.| |+
T Consensus 310 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~rviaDH~R~~~f~i~DGv~PsN~grGYvlRrilRRa~r~~-~~lg~~~~-l~ 387 (739)
T 2ztg_A 310 NQLRKSVADTVGVSVEELEGIVVPLEKVYSLADHTRCILFMLGDGLVPSNAGAGYLARLMIRRSLRLA-EELELGLD-LY 387 (739)
T ss_dssp HHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCSSHHHHHHHHHHHHHHHHH-HHTTCSSC-HH
T ss_pred HHHHHHHHHHCCCCHHHHHHHCCCCCEEEEEECHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHH-HHHCCCCC-HH
T ss_conf 99998766531554455432025531289981077777988516766687786249999999999999-98489855-77
Q ss_pred HHHHHHHHHHCCCCHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCHHHHHHH
Q ss_conf 47999999930138466860999999999999999999999999999999862299888144343004679996779999
Q 001826 400 GLVNIVVKVMGDVFPELKQREAHIREIIAAEEASFGKTLLKGIEKFKKAAQDVQGKVLSGQDAFILWDTYGFPLDLTQLM 479 (1009)
Q Consensus 400 ~lv~~v~~~~~~~ypel~~~~~~I~~ii~~Ee~~F~~tl~~G~~~l~~~~~~~~~~~isg~~af~LydTyGfP~dlt~~~ 479 (1009)
+||+++++.|++ ||.++++.|++||+.||++|.+||++|+++|+++++++++ |||++||+||||||||+|||++|
T Consensus 388 ~lv~~~~~~m~~---el~~~~~~I~~vi~~EE~~F~~Tl~~G~~~l~~~~~~~~~--l~g~~af~LyDTyGfP~dlt~~i 462 (739)
T 2ztg_A 388 DLVEMHKKILGF---EFDVPLSTVQEILELEKERYRTTVSKGTRLVERLVERKKK--LEKDDLIELYDSHGIPVELAVGI 462 (739)
T ss_dssp HHHHHHHHHHCC---CCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSB--CCHHHHHHHHHHHCCCHHHHHHH
T ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--CCHHHHHHHHHHCCCCHHHHHHH
T ss_conf 899999999989---9998799999999999999999999999999999987407--99899999887039899999999
Q ss_pred HHHCCCEECHH-HHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCC--CCEEEEEEEEEEEECC
Q ss_conf 98809300854-29999999999968631002588521336688998532888866556766--3201218999999488
Q 001826 480 AEERGLLVDIE-GFNNAMDEARERSRSAQNKQAGGAIVMDADATAALHKRGVLATDDSFKFI--WFQDHKSVIKAIYTGS 556 (1009)
Q Consensus 480 a~e~g~~vD~~-~f~~~~~~~~~~sr~~~~~~~~~~~~~~~~~~~~l~~~~~~~T~~~~~Y~--~~~~~~a~Vl~i~~~~ 556 (1009)
|+|+|++||++ +|+++|++||++||++. . . + + .+. ...|+|+ +.+|+ |..+++|+|+++..
T Consensus 463 a~e~g~~vd~~~~F~~~m~~q~~~a~~~~--~-~-----~---~-~~~-~~~~~T~-~l~Y~~~y~~~~~a~Vl~i~~-- 526 (739)
T 2ztg_A 463 AAEKGAEVEMPKDIYAELAKRHSKAEKVQ--E-K-----K---I-TLQ-NEYPATE-KLYYDDPTLLEFEAEVIGVEG-- 526 (739)
T ss_dssp HHHTTCBCCCCTTHHHHHHHTTSBCCCCC--C-C-----C---C-CCS-SCCCCCE-ECTTTCTTCCEEEEEEEEEET--
T ss_pred HHHCCCEECCCCCHHHHHHHHHHHHHHCC--C-C-----C---H-HHH-CCCCCCE-EECCCCCCCCEEEEEEEEEEC--
T ss_conf 99749715775549999999999976353--4-4-----4---1-231-2688861-542567765578899999975--
Q ss_pred EEEEEECCCCEEEEEECCCCCCCCCCCCCCCEEEEECCCCCEEEEEEEEECCEEEEEEEEECCCCCC-CCCCEEEEEEEH
Q ss_conf 1443203998499992566663489998887179983551089995999799999999852355547-899989999802
Q 001826 557 EFIESVVPGNEVGIVLASSSFYAEQGGQIFDEGFIEGLFGSFYVRNVQIYGGFVIHIGSLTEGAGRF-SVGEEVICKVDY 635 (1009)
Q Consensus 557 ~~~~~~~~~~~~~ivLD~T~FYpegGGQ~~D~G~I~~~~~~~~V~dv~~~~g~i~H~~~~~~~~~~l-~~G~~V~~~VD~ 635 (1009)
.+|+||+|||||||||||+|+|+|..++..+.|.||++.+|.++|.+. +.+ .+|++|.+.|||
T Consensus 527 -----------~~VVLD~TpFYpEgGGQ~~D~G~I~~~g~~~~V~dv~k~~g~ivH~~~-----~~~~~~Gd~V~~~VD~ 590 (739)
T 2ztg_A 527 -----------DFVILNRSAFYPESGGQDNDVGYLIANGGKFEVVDVLEADGVVLHVVK-----GAKPEVGTKVKGVIDS 590 (739)
T ss_dssp -----------TEEEESEECCCCSBTTBCCCCEEEEETTEEEEECEEEEETTEEEEECC-----SSCCCTTCEEEEEECH
T ss_pred -----------CEEEEECCCCCCCCCCCCCCEEEEEECCEEEEEEEEEEECCEEEEEEC-----CCCCCCCCEEEEEECH
T ss_conf -----------789981898788889999987999879989999999998999999971-----4577899889999868
Q ss_pred HHHHHHHHHCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCHH
Q ss_conf 33333421214999999999988199400124421299669980599999987999999999999981898799992988
Q 001826 636 DRRKLIAPNHTCTHMLNFALREVLGDHVDQKGSVVLPEKLRFDFSHGKPVDPEHLRRIESIVNEQIKAELDVFSKEATLA 715 (1009)
Q Consensus 636 ~rR~~~m~~HTAtHLL~aALr~vlg~~v~q~Gs~v~~d~lr~Df~~~~~lt~eeL~~IE~~vNe~I~~~~pV~~~~~~~e 715 (1009)
+||+.+|++|||+|||++|++++||.+++|.||++.++++||||+++.+++++++.+||++||++|++|+||++.+++++
T Consensus 591 ~rR~~~m~~HTAtHLL~~ALr~vlG~~v~q~GS~v~~d~~r~DF~~~~~lT~edL~~IE~~vNeiI~~nlpV~~~~~s~e 670 (739)
T 2ztg_A 591 DVRWRHMRHHSATHVLLYSLQKVLGNHVWQAGARKEFSKARLDVTHFRRPSEEEIKEIEMLANREILANKPIKWEWMDRI 670 (739)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCTTCCEEECCSCCSSCEEEEECSSCCCHHHHHHHHHHHHHHHHTTCBEEEEEEEHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCEECCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECHH
T ss_conf 99999999989999999999975699678657677288179998579889999999999999999974998899980899
Q ss_pred HHHCCCCCHHHC-CCCCCCCEEEEEECCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCEEEEEECCCCCCCEEEE
Q ss_conf 896001701111-7758998799994666200025978875540468520687856622456589953103468836999
Q 001826 716 EAKCINGLRAVF-GEVYPDPVRVVAIGRKVEDLLADPENKEWLSISAELCGGTHLSNTREAEAFALLSEEGIAKGIRRIT 794 (1009)
Q Consensus 716 eA~~~~g~~~~f-~e~y~d~VRVV~Ig~~~~~~~~~~~~~~~~~~d~e~CgGTHV~nTgeIg~fkI~~~~~v~~Gi~RI~ 794 (1009)
+|.++++++.+. +++|.+.||||+|| + ++++||||||+|||+||.|+|++++++++|++||+
T Consensus 671 EA~~~~~l~L~~~~~~~~d~VRVV~IG----------------d-~~elCGGTHV~nTgeIg~fkIls~s~i~~GvrRIe 733 (739)
T 2ztg_A 671 EAERKFGFRLYQGGVPPGRKIRVVQVG----------------D-DVQACGGTHCRSTGEIGMLKILKVESIQDGVIRFE 733 (739)
T ss_dssp HHHHHHCGGGGTTCCCCSSEEEEEEET----------------T-EEEECCSCCCSBGGGGCCEEEEEEEEEETTEEEEE
T ss_pred HHHHHCCHHHHCCCCCCCCEEEEEEEC----------------C-EEECCCCCCCCCHHHCCCEEEEEEEEECCCEEEEE
T ss_conf 998718776524789889868999989----------------9-00676896724486718399999747729879999
Q ss_pred EECCH
Q ss_conf 98043
Q 001826 795 AVTTG 799 (1009)
Q Consensus 795 ~vtG~ 799 (1009)
++||.
T Consensus 734 avtG~ 738 (739)
T 2ztg_A 734 FAAGE 738 (739)
T ss_dssp EEESC
T ss_pred EEECC
T ss_conf 99658
No 3
>1yfs_A Alanyl-tRNA synthetase; alpha-beta fold, helix-loop-helix motif, amino acid binding, ligase; 2.08A {Aquifex aeolicus} SCOP: a.203.1.1 d.104.1.1 PDB: 1yfr_A* 1riq_A 1yft_A 1ygb_A 3htz_A
Probab=1.00 E-value=1 Score=1370.94 Aligned_cols=425 Identities=48% Similarity=0.888 Sum_probs=406.4
Q ss_pred CCCHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 78946999999975421998361588875589997331113344665444466699986665654333354412489889
Q 001826 57 EWPATKVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFANAGMNQYKPIFLGTADPNTQLSKLTRACNTQKCIRAGGKHN 136 (1009)
Q Consensus 57 ~~~~~eiR~~fl~fF~~~~H~~v~s~slvp~~d~tllF~nAGm~~fk~~flG~~~p~~~~~~~~r~~~~QkCiR~gGkhn 136 (1009)
+|+++|||++||+||++|||+++|||||||+||||||||||||+||||||+|.++||. +|+|+||||||+|||||
T Consensus 2 ~~~~~eiR~~Fl~FF~~kgH~~vpSsslvp~~DptLLftnAGM~~FKp~flG~~~p~~-----~r~t~sQkCiRag~~hN 76 (465)
T 1yfs_A 2 SLSAHEIRELFLSFFEKKGHTRVKSAPLVPENDPTLLFVNAGMVPFKNVFLGLEKRPY-----KRATSCQKCLRVSGKHN 76 (465)
T ss_dssp CCCHHHHHHHHHHHHHTTTCEECCCCCSSCTTCTTCSSCCSTTSTTHHHHHTSSCCSC-----SEEEEEEEEECEETTEE
T ss_pred CCCHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCCEECCCHHHHHHHHCCCCCCCC-----CCEECCCCCCCCCCCCC
T ss_conf 9989999999999998688989167773669999820221344551577649888999-----86001340120688866
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHC--CC
Q ss_conf 8778787888530000025654443338989999998711013889996299997799768999957899998830--99
Q 001826 137 DLDDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWAWELLTKVYRLPADRLYATYFGGDEKAGLAPDNEARDIWLKF--LP 214 (1009)
Q Consensus 137 Dld~VG~t~rHhTfFEMlGn~SFgdYfK~eai~~awe~Lt~~l~l~~~rL~vT~~~~~~~~~~~~D~E~~~iW~~~--~~ 214 (1009)
||||||+|+|||||||||||||||||||+|||.|||||||++|||||+|||||||++ |+||++||++. +|
T Consensus 77 DlenVG~t~rHhTfFEMLGNfSFGDYFK~eAI~~AwE~LT~~lgl~~~rL~vTv~~~--------D~Ea~~iW~~~~G~p 148 (465)
T 1yfs_A 77 DLEQVGYTSRHHTFFEMLGNFSFGDYFKKEAIEYAWEFVTEVLKLPKEKLYVSVYKD--------DEEAYRIWNEHIGIP 148 (465)
T ss_dssp CGGGBTTBSSCCSEEEEEEEEESSSCCHHHHHHHHHHHHHHTSCCCGGGEEEEEETT--------CHHHHHHHHTTTCCC
T ss_pred CHHHCCCCCCCCCHHEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHEEEEEECC--------CHHHHHHHHHHCCCC
T ss_conf 176538888752130043442135663999999999999865199778948988279--------789999999730998
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99733688877864579978886864677514799887777889999647983100112233899953569989565563
Q 001826 215 ASRVLPFGCKDNFWEMGDTGPCGPCSEIHYDRTGNRDAASLVNNDDPTCIEIWNIVFIQFNRESDGSLKPLPAKHVDTGL 294 (1009)
Q Consensus 215 ~~~i~~~~~~dNfW~mG~~GpcGPCsEi~yd~~~~~~~~~~~~~~~~~~lEiwNlVFmq~~~~~~g~l~~L~~~~iDtGm 294 (1009)
++||+++|.+||||+||++||||||||||||+|++++ ++||||||||||||||||+++|+|.|||+|||||||
T Consensus 149 ~~rI~~~g~~dNFW~mG~tGPCGPCsEI~yD~g~~~~-------~~~r~lEIWNlVFmQy~r~~~g~l~pLp~k~IDTGm 221 (465)
T 1yfs_A 149 SERIWRLGEEDNFWQMGDVGPCGPSSEIYVDRGEEYE-------GDERYLEIWNLVFMQYNRDENGVLTPLPHPNIDTGM 221 (465)
T ss_dssp GGGEEEECHHHHEEESSSSEEEEEEEEEEEECCTTSC-------HHHHEEEEEEEEEEEEEECTTSCEEEEEEEEEEEEE
T ss_pred HHHEEECCCCCCCCCCCCCCCCCCCEEEEECCCCCCC-------CCCCEEEEEEEEEEEEEECCCCCCCCCCCCCEECCC
T ss_conf 9995667876776647898488787578871578878-------887778763113367784589863328997041586
Q ss_pred CHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHEEEECCCCCCCCCCCCH
Q ss_conf 18999998809999752223099999999994999888978998610111123320211113100121898558989634
Q 001826 295 GFERLTSILQNKMSNYDTDVFMPIFDAIQQATGARPYSGKVGADDADKVDMAYRVVADHIRTLSFAIADGSCPGNEGREY 374 (1009)
Q Consensus 295 GlERl~~vlqg~~snydtd~f~pli~~i~~~~~~~~y~~~~~~~~~~~~~~a~rviaDH~R~~~~~i~DG~~Psn~grgY 374 (1009)
|||||+|||||++||||||+|.|||++|++++|.+ |.. + +..|+++||||||+||++|||+||++|||+||||
T Consensus 222 GLERla~vlQg~~snYdtDlf~pii~~i~~~~g~~-Y~~----~--~~~d~s~rvIADH~R~~~f~I~DGv~PsN~GrGY 294 (465)
T 1yfs_A 222 GLERIASVLQGKNSNFEIDIIFPLIQFGEEVSGKK-YGE----K--FETDVALRVIADHLRAITFAISDGVIPSNEGRGY 294 (465)
T ss_dssp EHHHHHHHHTTCSSGGGSTTTHHHHHHHHHHHCCC-TTS----C--HHHHHHHHHHHHHHHHHHHHHHTTCCCCSBHHHH
T ss_pred CHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCC-CCC----C--CCCCEEEEEECCHHHHHHHHHCCCCCCCCCCCCH
T ss_conf 79999999819986320563899999999985998-777----7--6666248997441123243100566547788614
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
Q ss_conf 7799999999997766099864022479999999301384668609999999999999999999999999999998622-
Q 001826 375 VLRRILRRAVRYGSEVLKAQDGFFNGLVNIVVKVMGDVFPELKQREAHIREIIAAEEASFGKTLLKGIEKFKKAAQDVQ- 453 (1009)
Q Consensus 375 vlRrilRRa~~~~~~~lg~~~~fl~~lv~~v~~~~~~~ypel~~~~~~I~~ii~~Ee~~F~~tl~~G~~~l~~~~~~~~- 453 (1009)
|||||||||+|+|+ .||++.|||++||+++++.|++.||||.++++.|++||+.||++|.+||++|+++|++++++++
T Consensus 295 VLRRilRRavr~g~-~Lg~~~~fl~~Lv~~v~~~m~~~yPel~~~~~~I~~vi~~EE~~F~~TL~~G~~~l~~~~~~~~~ 373 (465)
T 1yfs_A 295 VIRRILRRAMRFGY-KLGIENPFLYKGVDLVVDIMKEPYPELELSREFVKGIVKGEEKRFIKTLKAGMEYIQEVIQKALE 373 (465)
T ss_dssp HHHHHHHHHHHHHH-HTTCCSCCHHHHHHHHHHHHTTTCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-HHCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999-95898035889999999997453806666589999999999999999999999999999998875
Q ss_pred --CCCCCHHHHHHHHCCCCCCHHHHHHHHHHCCCEECHHHHHHHHHHHHHHHHHHHCC
Q ss_conf --99888144343004679996779999988093008542999999999996863100
Q 001826 454 --GKVLSGQDAFILWDTYGFPLDLTQLMAEERGLLVDIEGFNNAMDEARERSRSAQNK 509 (1009)
Q Consensus 454 --~~~isg~~af~LydTyGfP~dlt~~~a~e~g~~vD~~~f~~~~~~~~~~sr~~~~~ 509 (1009)
+++|||++||+||||||||+|||++||+|+|++||+++|+++|++||++||++++.
T Consensus 374 ~~~~~l~G~~af~LyDTyGfP~dLt~eia~e~g~~vD~~gF~~~m~~q~~rar~~~~~ 431 (465)
T 1yfs_A 374 EGRKTLSGKEVFTAYDTYGFPVDLIDEIAREKGLGIDLEGFQCELEEQRERARKHFKV 431 (465)
T ss_dssp TTCCEECHHHHHHHHHTSCCCHHHHHHHHHTTTCEECHHHHHHHHHHHHHTTTTC---
T ss_pred CCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHCCCEECHHHHHHHHHHHHHHHHHHHHC
T ss_conf 5897679899876454469899999999998699167899999999999999864544
No 4
>3hy0_A Alanyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase, protein biosynthesis, NUC binding, amino acid-binding, ATP-binding, metal-binding; HET: G5A EPE; 1.90A {Escherichia coli} PDB: 3hxz_A* 3hy1_A* 3hxv_A* 3hxu_A* 3hxw_A* 3hxx_A* 3hxy_A*
Probab=1.00 E-value=1 Score=1365.15 Aligned_cols=424 Identities=50% Similarity=0.891 Sum_probs=404.3
Q ss_pred CCHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 89469999999754219983615888755899973311133446654444666999866656543333544124898898
Q 001826 58 WPATKVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFANAGMNQYKPIFLGTADPNTQLSKLTRACNTQKCIRAGGKHND 137 (1009)
Q Consensus 58 ~~~~eiR~~fl~fF~~~~H~~v~s~slvp~~d~tllF~nAGm~~fk~~flG~~~p~~~~~~~~r~~~~QkCiR~gGkhnD 137 (1009)
++++|||++||+||++|||++||||||||+||||||||||||+||||||+|+++|+ ++|+|+||||||+||||||
T Consensus 2 ~~~~eiR~~Fl~FF~~kgH~~v~Ssslvp~~DptLLftnAGM~~FKp~flG~~~p~-----~~r~~~sQkCiR~gGKHnD 76 (441)
T 3hy0_A 2 KSTAEIRQAFLDFFHSKGHQVVASSSLVPHNDPTLLFTNAGMNQFKDVFLGLDKRN-----YSRATTSQRCVRAGGKHND 76 (441)
T ss_dssp CCHHHHHHHHHHHHHHTTCEECCCCCSSCSSCTTCSSCCSGGGGGHHHHHTSSCCS-----CSEEEEEEEEECEETTEEC
T ss_pred CCHHHHHHHHHHHHHHCCCEECCCCCCCCCCCCCCEEECCCCHHHHHHHCCCCCCC-----CCCCCCCCCCEECCCCCCC
T ss_conf 77899999999999867976847878367999982134035033135653899999-----9872355533545998777
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCC--CCCCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHC--C
Q ss_conf 778787888530000025654443338989999998711--013889996299997799768999957899998830--9
Q 001826 138 LDDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWAWELLT--KVYRLPADRLYATYFGGDEKAGLAPDNEARDIWLKF--L 213 (1009)
Q Consensus 138 ld~VG~t~rHhTfFEMlGn~SFgdYfK~eai~~awe~Lt--~~l~l~~~rL~vT~~~~~~~~~~~~D~E~~~iW~~~--~ 213 (1009)
|||||+|+|||||||||||||||||||+|||.||||||| ++|||||+|||||||++ |+||++||++. +
T Consensus 77 lenVG~t~rHhTfFEMLGNfSFGDYFK~eAI~~Awe~LT~~~~lgl~~erL~vTvf~~--------D~Ea~~iW~~~~Gv 148 (441)
T 3hy0_A 77 LENVGYTARHHTFFEMLGNFSFGDYFKLDAILFAWLLLTSEKWFALPKERLWVTVYES--------DDEAYEIWEKEVGI 148 (441)
T ss_dssp GGGBTTBSSCCSEEEEEEEEESSSCCHHHHHHHHHHHHHCTTTTCCCGGGEEEEEETT--------CHHHHHHHHHTTCC
T ss_pred HHHHCCCCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHEEEEEECC--------CHHHHHHHHHCCCC
T ss_conf 7760888754220335454331121198999999998177773488789968888278--------78999999873199
Q ss_pred CCCCCCCCC-------CCCCCCCCCCCCCCCCCEEEEEECCCCCCC--CCCCCCCCCCEEEEEEECCCCCCCCCCCCCCC
Q ss_conf 999733688-------877864579978886864677514799887--77788999964798310011223389995356
Q 001826 214 PASRVLPFG-------CKDNFWEMGDTGPCGPCSEIHYDRTGNRDA--ASLVNNDDPTCIEIWNIVFIQFNRESDGSLKP 284 (1009)
Q Consensus 214 ~~~~i~~~~-------~~dNfW~mG~~GpcGPCsEi~yd~~~~~~~--~~~~~~~~~~~lEiwNlVFmq~~~~~~g~l~~ 284 (1009)
|++||+++| .+||||+||++||||||||||||+|+...+ .+.+++|+||||||||||||||||+++|+|.|
T Consensus 149 p~~rI~~~g~~~~~~y~~dNFW~mG~tGPCGPCsEI~yD~g~~~~~g~~~~~~~d~~r~lEIWNlVFmQy~r~~~g~l~p 228 (441)
T 3hy0_A 149 PRERIIRIGDNKGAPYASDNFWQMGDTGPCGPCTEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEP 228 (441)
T ss_dssp CGGGEEEECSTTSBTTBBTTEEESSSSEEEEEEEEEEEECCTTSCCCCTTSTTTTSSSEEEEEEEEEEEEEECTTSCEEE
T ss_pred CHHHEEECCCCCCCCCCCCCCHHCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCEEEEEEEEEEEEEECCCCCCCC
T ss_conf 89994436765555654657011489828868756888347544788777777889976897333433022248996212
Q ss_pred CCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHEEEECCC
Q ss_conf 99895655631899999880999975222309999999999499988897899861011112332021111310012189
Q 001826 285 LPAKHVDTGLGFERLTSILQNKMSNYDTDVFMPIFDAIQQATGARPYSGKVGADDADKVDMAYRVVADHIRTLSFAIADG 364 (1009)
Q Consensus 285 L~~~~iDtGmGlERl~~vlqg~~snydtd~f~pli~~i~~~~~~~~y~~~~~~~~~~~~~~a~rviaDH~R~~~~~i~DG 364 (1009)
||+||||||||||||+|||||++||||||+|.|||+++++++|.. | ..++++||||||+||++|||+||
T Consensus 229 Lp~k~IDTGmGLERla~vlQg~~snYdtDlf~pii~~i~~~~g~~-~----------~~~~s~rvIADH~R~~~f~iaDG 297 (441)
T 3hy0_A 229 LPKPSVDTAMGLERIAAVLQHVNSNYDIDLFRTLIQAVAKVTGAT-D----------LSNKSLRVIADHIRSCAFLIADG 297 (441)
T ss_dssp EEEEEEEEEEEHHHHHHHHTTCSSGGGSHHHHHHHHHHHHHHTCC-C----------TTCHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCEECCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCC-C----------CCCCEEEEECCHHHHHHHHHHCC
T ss_conf 899843269789999999829986533166999999999984998-6----------56631678605677789987057
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 85589896347799999999997766099864022479999999301384668609999999999999999999999999
Q 001826 365 SCPGNEGREYVLRRILRRAVRYGSEVLKAQDGFFNGLVNIVVKVMGDVFPELKQREAHIREIIAAEEASFGKTLLKGIEK 444 (1009)
Q Consensus 365 ~~Psn~grgYvlRrilRRa~~~~~~~lg~~~~fl~~lv~~v~~~~~~~ypel~~~~~~I~~ii~~Ee~~F~~tl~~G~~~ 444 (1009)
++|||+|||||||||||||+|+++ .||++.|||++||+++++.|++.||||.++++.|++||+.||++|.+||++|+++
T Consensus 298 v~PsNeGrGYVLRRilRRAvr~g~-~Lg~~~~fl~~Lv~~v~~~m~~~yPeL~~~~~~I~~vi~~EE~~F~~TL~~G~~~ 376 (441)
T 3hy0_A 298 VMPSNENRGYVLRRIIRRAVRHGN-MLGAKETFFYKLVGPLIDVMGSAGEDLKRQQAQVEQVLKTEEEQFARTLERGLAL 376 (441)
T ss_dssp CCCCSSHHHHHHHHHHHHHHHHHH-HHTCCSCCGGGGHHHHHHHHGGGGHHHHHTHHHHHHHHHHHHHHHHTTHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHH-HHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 655788863169999999999999-8399975277799999999742555878609999999999999999999988999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHCCCEECHHHHHHHHHHHHHHHHHH
Q ss_conf 99999862299888144343004679996779999988093008542999999999996863
Q 001826 445 FKKAAQDVQGKVLSGQDAFILWDTYGFPLDLTQLMAEERGLLVDIEGFNNAMDEARERSRSA 506 (1009)
Q Consensus 445 l~~~~~~~~~~~isg~~af~LydTyGfP~dlt~~~a~e~g~~vD~~~f~~~~~~~~~~sr~~ 506 (1009)
|++.+++.++++|||++||+||||||||+|||++||+|+|++||+++|+++|++||++||++
T Consensus 377 l~~~~~~~~~~~l~g~~af~LyDTyGfP~dLt~eia~e~g~~vD~~~F~~~m~~qr~rar~~ 438 (441)
T 3hy0_A 377 LDEELAKLSGDTLDGETAFRLYDTYGFPVDLTADVCRERNIKVDEAGFEAAMEEQRRRAREA 438 (441)
T ss_dssp HHHHHHSCCSSEECHHHHHHHHHHHCCCHHHHHHHHHTTTCEECHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHC
T ss_conf 99999981489889898775032579898999999998699406899999999999999743
No 5
>3kew_A DHHA1 domain protein; structural genomics, PSI-2, tRNA synthase, protein structure initiative; 2.00A {Clostridium perfringens}
Probab=1.00 E-value=1 Score=420.05 Aligned_cols=226 Identities=23% Similarity=0.273 Sum_probs=205.5
Q ss_pred CCCCCEEEEEEEEEEEECCEEEEEECCCCEEEEEECCCCCCCCCCCCCCCEEEEECCCCCEEEEEEEEECCEEEEEEEEE
Q ss_conf 76632012189999994881443203998499992566663489998887179983551089995999799999999852
Q 001826 538 KFIWFQDHKSVIKAIYTGSEFIESVVPGNEVGIVLASSSFYAEQGGQIFDEGFIEGLFGSFYVRNVQIYGGFVIHIGSLT 617 (1009)
Q Consensus 538 ~Y~~~~~~~a~Vl~i~~~~~~~~~~~~~~~~~ivLD~T~FYpegGGQ~~D~G~I~~~~~~~~V~dv~~~~g~i~H~~~~~ 617 (1009)
...|..+++|+|+++..+ ++.++|+||+|||||||||||+|+|+|. .+.|.+|++.+|.++|++.
T Consensus 9 ~d~y~~~~~a~V~~~~~~---------~~~~~vvLd~T~FYpegGGQ~~D~G~i~----~~~V~~v~~~~g~i~H~~~-- 73 (241)
T 3kew_A 9 EDQYIKEFKGEIIEVKEI---------DGKFHVLLDQTAFFPGGGGQMGDLGLID----GIKVLDVYEEEGKVYHVLE-- 73 (241)
T ss_dssp TCTTCCEEEECEEEEEEE---------TTEEEEEESEECCCCCBTTBCCCCEEET----TEEEEEEEEETTEEEEEES--
T ss_pred HCCCCCEEEEEEEEEEEC---------CCEEEEEEECCCCCCCCCCCCCCEEEEE----EEEEEEEEEECCEEEEEEC--
T ss_conf 095000658999999956---------9859999808850279999999889992----2899999996999999978--
Q ss_pred CCCCCCCCCCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHH
Q ss_conf 35554789998999980233333421214999999999988199400124421299669980599999987999999999
Q 001826 618 EGAGRFSVGEEVICKVDYDRRKLIAPNHTCTHMLNFALREVLGDHVDQKGSVVLPEKLRFDFSHGKPVDPEHLRRIESIV 697 (1009)
Q Consensus 618 ~~~~~l~~G~~V~~~VD~~rR~~~m~~HTAtHLL~aALr~vlg~~v~q~Gs~v~~d~lr~Df~~~~~lt~eeL~~IE~~v 697 (1009)
+++.+|+.|.+.|||+||+.+|++|||+|||++|++++||.+ +.|+++.++++||||+ .+++++++.+||++|
T Consensus 74 ---~~l~~g~~V~~~vD~~rR~~~~~~HTa~HLL~~al~~~~g~~--~~G~~v~~~~~r~Df~--~~lt~e~l~~IE~~v 146 (241)
T 3kew_A 74 ---KEPKKLKNLQCELDWERRFDGMQQHLGQHLLSGCFYDLFGAN--TCGFHLGKEISTVDIV--GFLDEKTIREAEKEA 146 (241)
T ss_dssp ---SCCCCCSSEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHCCC--EEEEEECSSCEEEEEE--SCCCHHHHHHHHHHH
T ss_pred ---CCCCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHCCCC--EEECCCCCCEEEEEEC--CCCCHHHHHHHHHHH
T ss_conf ---867999889999887875668888799999999999877997--4855155882899989--999999999999999
Q ss_pred HHHHHCCCCEEEEECCHHHHHCCCCCHHHCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCC
Q ss_conf 99998189879999298889600170111177589987999946662000259788755404685206878566224565
Q 001826 698 NEQIKAELDVFSKEATLAEAKCINGLRAVFGEVYPDPVRVVAIGRKVEDLLADPENKEWLSISAELCGGTHLSNTREAEA 777 (1009)
Q Consensus 698 Ne~I~~~~pV~~~~~~~eeA~~~~g~~~~f~e~y~d~VRVV~Ig~~~~~~~~~~~~~~~~~~d~e~CgGTHV~nTgeIg~ 777 (1009)
|++|++|+||.+.++++++|.++ +++++ +++|++.||+|+|| ++|+++||||||+||++||.
T Consensus 147 n~~I~~~~pV~~~~~~~~eA~~~-~~~~~-~e~~~~~VRvv~ig----------------~~~~~~CgGtHV~~TgeIg~ 208 (241)
T 3kew_A 147 NRLIFENLEVKSYAPSKKELKKV-KTRRA-LPKTDEEIRIVEIV----------------GLDLNACCGVHPRNTRDLQV 208 (241)
T ss_dssp HHHHHHTCBEEEECCCTTTTTTC-CCSSC-CCCCSSCCCEEEET----------------TTEEEECCSCCCSBSGGGCC
T ss_pred HHHHHCCCCEEEEECCHHHHHHC-CHHHC-CCCCCCCEEEEEEC----------------CEEEECCCCCCCCCHHHCCC
T ss_conf 99998499889998489999764-81114-87569948999999----------------96787379977478846498
Q ss_pred EEEEEECCCCCCCEEEEEECCHHHHHH
Q ss_conf 899531034688369999804369999
Q 001826 778 FALLSEEGIAKGIRRITAVTTGLAYKA 804 (1009)
Q Consensus 778 fkI~~~~~v~~Gi~RI~~vtG~~A~~~ 804 (1009)
|+|++.++++ |.+||+|+||.+|++.
T Consensus 209 fkI~~~~~~~-~~~RI~~~~G~~a~~~ 234 (241)
T 3kew_A 209 IKIRRWEKHK-NATRIEYVAGNRAVSE 234 (241)
T ss_dssp EEEEEEEEET-TEEEEEEEEGGGGC--
T ss_pred EEEEEEECCC-CCEEEEEEECHHHHHC
T ss_conf 9999984327-9699999977799741
No 6
>2e1b_A PH0108, 216AA long hypothetical alanyl-tRNA synthetase; zinc-binding motif, trans-editing enzyme, structural genomics, NPPSFA; 2.70A {Pyrococcus horikoshii} SCOP: b.43.3.6 d.67.1.2
Probab=1.00 E-value=1 Score=380.80 Aligned_cols=203 Identities=29% Similarity=0.382 Sum_probs=183.0
Q ss_pred CCCCCEEEEEEEEEEEECCEEEEEECCCCEEEEEECCCCCCCCCCCCCCCEEEEECCCCCEEEEEEEEE-CCEEEEEEEE
Q ss_conf 766320121899999948814432039984999925666634899988871799835510899959997-9999999985
Q 001826 538 KFIWFQDHKSVIKAIYTGSEFIESVVPGNEVGIVLASSSFYAEQGGQIFDEGFIEGLFGSFYVRNVQIY-GGFVIHIGSL 616 (1009)
Q Consensus 538 ~Y~~~~~~~a~Vl~i~~~~~~~~~~~~~~~~~ivLD~T~FYpegGGQ~~D~G~I~~~~~~~~V~dv~~~-~g~i~H~~~~ 616 (1009)
...|..+++|+|+++. + + +|+||+|||||||||||+|+|+|. + ++|.+|++. +|.++|++..
T Consensus 11 ~d~y~~~~~a~V~~~~-~----------~--~vvld~T~Fype~GGQ~~D~G~i~---~-~~V~~v~~~~~~~i~H~~~~ 73 (216)
T 2e1b_A 11 EDAYLKEAKGRVLEIR-D----------N--AILLDQTIFYPTGGGQPHDRGTIN---G-VEVLDVYKDEEGNVWHVVKE 73 (216)
T ss_dssp SCTTCCEEEECBCCCC-S----------S--CCCBSCCCSCCCCTTCCCCCEEET---T-EEEEEEECCTTCCCEEEESC
T ss_pred HCCCCCEEEEEEEEEE-C----------C--EEEEECCCCCCCCCCCCCCEEEEC---C-EEEEEEEECCCCEEEEEECC
T ss_conf 1865233368999981-9----------9--899847873288999999989994---4-89999998769989999914
Q ss_pred ECCCCCCCCCCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHCCC-CCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHH
Q ss_conf 2355547899989999802333334212149999999999881994-001244212996699805999999879999999
Q 001826 617 TEGAGRFSVGEEVICKVDYDRRKLIAPNHTCTHMLNFALREVLGDH-VDQKGSVVLPEKLRFDFSHGKPVDPEHLRRIES 695 (1009)
Q Consensus 617 ~~~~~~l~~G~~V~~~VD~~rR~~~m~~HTAtHLL~aALr~vlg~~-v~q~Gs~v~~d~lr~Df~~~~~lt~eeL~~IE~ 695 (1009)
. +.+.+|++|.+.|||+||+.+|++|||+|||++|++++||.+ +.+.|+++.++++||||+++.+++++ +.+||+
T Consensus 74 -~--~~l~~g~~v~~~vD~~rR~~~~~~HTA~HlL~~Al~~~~g~~~~~~~g~~v~~~~~r~Df~~~~~lt~e-l~~IE~ 149 (216)
T 2e1b_A 74 -P--EKFKVGDEVELKIDWDYRYKLMRIHTGLHLLEHVLNEVLGEGNWQLVGSGMSVEKGRYDIAYPENLNKY-KEQIIS 149 (216)
T ss_dssp -G--GGCCSSSCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHTTTSCEEEECCBCSSEEEEEEECSSCGGGG-HHHHHH
T ss_pred -C--CCCCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCEEEEEECCCCCCHH-HHHHHH
T ss_conf -7--875999999999878998789988689999999999972986420665227178189998579989889-999999
Q ss_pred HHHHHHHCCCCEEEEECCHHHHHCCCCCHHHCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCC
Q ss_conf 99999981898799992988896001701111775899879999466620002597887554046852068785662245
Q 001826 696 IVNEQIKAELDVFSKEATLAEAKCINGLRAVFGEVYPDPVRVVAIGRKVEDLLADPENKEWLSISAELCGGTHLSNTREA 775 (1009)
Q Consensus 696 ~vNe~I~~~~pV~~~~~~~eeA~~~~g~~~~f~e~y~d~VRVV~Ig~~~~~~~~~~~~~~~~~~d~e~CgGTHV~nTgeI 775 (1009)
+||++|++|+||.+.++++ ||+|+|| ++|.++||||||+||++|
T Consensus 150 ~vn~~I~~~~pv~~~~~~~--------------------vRvv~ig----------------~~~~~~CgGtHV~~TgeI 193 (216)
T 2e1b_A 150 LFNKYVDEGGEVKIWWEGD--------------------RRYTQIR----------------DFEVIPCGGTHVKDIKEI 193 (216)
T ss_dssp HHHHHHHHCCBEEEEESSS--------------------CEEEEET----------------TSCEECCCSCCCSBGGGT
T ss_pred HHHHHHHCCCCEEEEECCC--------------------EEEEEEC----------------CEEEECCCCCCCCCHHHC
T ss_conf 9999996099789999088--------------------7999999----------------978788899773617557
Q ss_pred CCEEEEEECCCCCCCEEEEEEC
Q ss_conf 6589953103468836999980
Q 001826 776 EAFALLSEEGIAKGIRRITAVT 797 (1009)
Q Consensus 776 g~fkI~~~~~v~~Gi~RI~~vt 797 (1009)
|.|+|++++++++|++||++.-
T Consensus 194 g~fkI~~~~~~~~g~rRi~~~l 215 (216)
T 2e1b_A 194 GHIKKLKRSSIGRGKQRLEMWL 215 (216)
T ss_dssp CCEEEEEEEEEETTEEEEEEEE
T ss_pred CEEEEEEEEEECCCEEEEEEEE
T ss_conf 6499999748839989999997
No 7
>1nyr_A Threonyl-tRNA synthetase 1; ATP, threonine, ligase; HET: ATP; 2.80A {Staphylococcus aureus} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 PDB: 1nyq_A*
Probab=1.00 E-value=1 Score=254.40 Aligned_cols=230 Identities=17% Similarity=0.252 Sum_probs=187.7
Q ss_pred EECCEEEEEEEEECCCCCCCCCCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCC
Q ss_conf 97999999998523555478999899998023333342121499999999998819940012442129966998059999
Q 001826 605 IYGGFVIHIGSLTEGAGRFSVGEEVICKVDYDRRKLIAPNHTCTHMLNFALREVLGDHVDQKGSVVLPEKLRFDFSHGKP 684 (1009)
Q Consensus 605 ~~~g~i~H~~~~~~~~~~l~~G~~V~~~VD~~rR~~~m~~HTAtHLL~aALr~vlg~~v~q~Gs~v~~d~lr~Df~~~~~ 684 (1009)
+.+|.+++. . .++..+..|+..-..+.+...+.+|||+|||++|++++||.+..+.|+.+ ++++||||++..+
T Consensus 41 ~vng~~~dl---~---~~l~~d~~v~~~~~~~~~g~~~~~HSa~HlL~~A~~~~~~~~~~~~g~~~-~~g~~~Df~~~~~ 113 (645)
T 1nyr_A 41 KFNGQLVDL---T---KPLETDGSIEIVTPGSEEALEVLRHSTAHLMAHAIKRLYGNVKFGVGPVI-EGGFYYDFDIDQN 113 (645)
T ss_dssp EETTEEECT---T---SCCCSCBCCCEECTTSHHHHHHHHHHHHHHHHHHHHHHSSSCEECCCCEE-TTEEEEEEECSSC
T ss_pred EECCEEEEC---C---CCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCC-CCCEEEEECCCCC
T ss_conf 999999867---8---31689986998635656479999999999999999997699689978745-8822899607999
Q ss_pred CCHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHCCCCC----HHHCCCCC-CCCEEEEEECCCCCCCCCCCCCCCCCCE
Q ss_conf 998799999999999998189879999298889600170----11117758-9987999946662000259788755404
Q 001826 685 VDPEHLRRIESIVNEQIKAELDVFSKEATLAEAKCINGL----RAVFGEVY-PDPVRVVAIGRKVEDLLADPENKEWLSI 759 (1009)
Q Consensus 685 lt~eeL~~IE~~vNe~I~~~~pV~~~~~~~eeA~~~~g~----~~~f~e~y-~d~VRVV~Ig~~~~~~~~~~~~~~~~~~ 759 (1009)
+|++++.+||++||++|++|+||++.++++++|.++++- ..++.... .+.||++++| ++
T Consensus 114 ~t~edl~~IE~~m~~iI~~~~pi~~~~~~~~eA~~~f~~~~yk~~li~~~~~~~~vrv~~~g----------------~~ 177 (645)
T 1nyr_A 114 ISSDDFEQIEKTMKQIVNENMKIERKVVSRDEAKELFSNDEYKLELIDAIPEDENVTLYSQG----------------DF 177 (645)
T ss_dssp CCSTTHHHHHHHHHHHHHTTCCEEEEECTTTHHHHHCSSCHHHHHHHCCCSSSCCCEEEEET----------------TE
T ss_pred CCHHHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHCCCHHHHHHCCCCCCEEEEEEEC----------------CE
T ss_conf 99999999999999999868986999954999998875373157886328989816999979----------------99
Q ss_pred EEEECCCCCCCCCCCCCCEEEEEEC-------CCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
Q ss_conf 6852068785662245658995310-------346883699998043699999999999999999850235226999999
Q 001826 760 SAELCGGTHLSNTREAEAFALLSEE-------GIAKGIRRITAVTTGLAYKAFEAACSLEKEVDDASKIEGSLLEKTVAS 832 (1009)
Q Consensus 760 d~e~CgGTHV~nTgeIg~fkI~~~~-------~v~~Gi~RI~~vtG~~A~~~~~~~~~~~~~l~~l~~~~~~~i~k~i~~ 832 (1009)
+++||||||+|||+||.|+|++++ +.++.++||++++++.. .++.++.+.++++..++|+++++++..
T Consensus 178 -~dlC~G~Hv~~Tg~i~~fkl~~~~~a~~~~~~~~~~l~ri~g~~~~~~----~~l~~~~~~l~ea~~rdhr~lg~~l~l 252 (645)
T 1nyr_A 178 -TDLCRGVHVPSTAKIKEFKLLSTAGAYWRGDSNNKMLQRIYGTAFFDK----KELKAHLQMLEERKERDHRKIGKELEL 252 (645)
T ss_dssp -EEECCSCCCSCGGGCCEEEEEEEEEEETTSCSSSCEEEEEEEEEESSH----HHHHHHHHHHHHHHHTCHHHHHHHTTC
T ss_pred -EEECCCCCCCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHCCCH----HHHHHHHHHHHHHHHHHHHHHHHHCCE
T ss_conf -996388666877777369983207668887767799999999856998----886555665533201308998652205
Q ss_pred --HHHH-CCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf --7631-18997688877789999999999999
Q 001826 833 --LKSK-VDGAAIPAPKKADIRAKIALLQNQVR 862 (1009)
Q Consensus 833 --l~~~-l~~~~i~~~~~~~l~~~l~~l~~~lk 862 (1009)
+.+. .+|+..|+|.+..+++.++++.++..
T Consensus 253 ~~~~~~~~~G~~~~lP~g~~~~~~l~~~ir~~~ 285 (645)
T 1nyr_A 253 FTNSQLVGAGLPLWLPNGATIRREIERYIVDKE 285 (645)
T ss_dssp EEEETTTEEEEEEECHHHHHHHHHHHHHHHHHH
T ss_pred EEECCCCCCCEEEECCCHHHHHHHHHHHHHHHH
T ss_conf 775255789605889788899999999999999
No 8
>1qf6_A THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, mRNA, aminoacylati translational regulation, protein/RNA, ligase-RNA complex; HET: H2U AET G7M 5MU PSU AMP; 2.90A {Escherichia coli} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1
Probab=1.00 E-value=1 Score=245.03 Aligned_cols=229 Identities=16% Similarity=0.237 Sum_probs=185.1
Q ss_pred EECCEEEEEEEEECCCCCCCCCCEEEEEEEHH-HHHHHHHHCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCC
Q ss_conf 97999999998523555478999899998023-33334212149999999999881994001244212996699805999
Q 001826 605 IYGGFVIHIGSLTEGAGRFSVGEEVICKVDYD-RRKLIAPNHTCTHMLNFALREVLGDHVDQKGSVVLPEKLRFDFSHGK 683 (1009)
Q Consensus 605 ~~~g~i~H~~~~~~~~~~l~~G~~V~~~VD~~-rR~~~m~~HTAtHLL~aALr~vlg~~v~q~Gs~v~~d~lr~Df~~~~ 683 (1009)
+.+|.+++. . .++..+.+|+ .|+++ .+...+.+|||+|||++|++++||....+.|+++. +++||||++..
T Consensus 39 ~vng~~~dl---~---~~l~~d~~~~-~~~~~~~~~~~~~~HSa~HlL~~Al~~~~~~~~~~~G~~i~-~gfy~Df~~~~ 110 (642)
T 1qf6_A 39 RVNGELVDA---C---DLIENDAQLS-IITAKDEEGLEIIRHSCAHLLGHAIKQLWPHTKMAIGPVID-NGFYYDVDLDR 110 (642)
T ss_dssp EETTEEEET---T---SCBCSCEECC-EECTTSHHHHHHHHHHHHHHHHHHHHHHCTTCEECCCCEET-TEEEEEEECSS
T ss_pred EECCEEECC---C---CCCCCCCEEE-EEECCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCC-CEEEEEEECCC
T ss_conf 899998046---5---1147885378-85247677899998799999999999868994799788668-80599986899
Q ss_pred CCCHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHCCCCC------HHHC-CCCCC-CCEEEEEECCCCCCCCCCCCCCC
Q ss_conf 9998799999999999998189879999298889600170------1111-77589-98799994666200025978875
Q 001826 684 PVDPEHLRRIESIVNEQIKAELDVFSKEATLAEAKCINGL------RAVF-GEVYP-DPVRVVAIGRKVEDLLADPENKE 755 (1009)
Q Consensus 684 ~lt~eeL~~IE~~vNe~I~~~~pV~~~~~~~eeA~~~~g~------~~~f-~e~y~-d~VRVV~Ig~~~~~~~~~~~~~~ 755 (1009)
++|++++.+||+.||++|++|+||++.++++++|.+++.. ..++ ++.++ +.||++++|
T Consensus 111 ~~t~edl~~IE~~m~~iI~~~~~v~~~~~~~~eA~~~~~~~~e~yk~~li~~~~~~~~~v~vy~~g-------------- 176 (642)
T 1qf6_A 111 TLTQEDVEALEKRMHELAEKNYDVIKKKVSWHEARETFANRGESYKVSILDENIAHDDKPGLYFHE-------------- 176 (642)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTCBEEEEECCHHHHHHHHHHHTCHHHHHHHHHHSCTTCCCEEEEET--------------
T ss_pred CCCHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHCCCCHHHHHHCCCCCCCCEEEEEEC--------------
T ss_conf 999999999999999999739987999954999999866507740023331226789826999989--------------
Q ss_pred CCCEEEEECCCCCCCCCCCCCCEEEEEECCC-------CCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
Q ss_conf 5404685206878566224565899531034-------688369999804369999999999999999985023522699
Q 001826 756 WLSISAELCGGTHLSNTREAEAFALLSEEGI-------AKGIRRITAVTTGLAYKAFEAACSLEKEVDDASKIEGSLLEK 828 (1009)
Q Consensus 756 ~~~~d~e~CgGTHV~nTgeIg~fkI~~~~~v-------~~Gi~RI~~vtG~~A~~~~~~~~~~~~~l~~l~~~~~~~i~k 828 (1009)
++ .++|+||||+|||+||.|+|++.++. +..++||++++++. .+++.++++.++++..++|+++++
T Consensus 177 --~~-~dlC~GpHv~~Tg~I~~fkl~~~~~~yw~g~~~~~~l~r~~g~~~~~----~~~l~~~~~~~eea~~rdH~~lg~ 249 (642)
T 1qf6_A 177 --EY-VDMCRGPHVPNMRFCHHFKLMKTAGAYWRGDSNNKMLQRIYGTAWAD----KKALNAYLQRLEEAAKRDHRKIGK 249 (642)
T ss_dssp --TE-EECCSSCCCSBGGGCCSEEEEEEEEEEGGGCTTSCEEEEEEEEECSS----HHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred --CE-EEECCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCEEEEEECCCCCC----HHHHHHHHHHHHCCCCCCHHHHHH
T ss_conf --99-89468876687775424898653035446766775157640345576----567766653330135478999998
Q ss_pred HH--HHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 99--99763118997688877789999999999999
Q 001826 829 TV--ASLKSKVDGAAIPAPKKADIRAKIALLQNQVR 862 (1009)
Q Consensus 829 ~i--~~l~~~l~~~~i~~~~~~~l~~~l~~l~~~lk 862 (1009)
++ +.+.+..+|...|+|.+..+++.++++.++..
T Consensus 250 ~l~l~~~~~~~~G~~~~lP~g~~l~~~l~~~~r~~~ 285 (642)
T 1qf6_A 250 QLDLYHMQEEAPGMVFWHNDGWTIFRELEVFVRSKL 285 (642)
T ss_dssp HTTCEECCTTSTTCCEECHHHHHHHHHHHHHHHHHH
T ss_pred HCCCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHHH
T ss_conf 547604454789737889709999999999999999
No 9
>1tke_A Threonyl-tRNA synthetase; ligase; 1.46A {Escherichia coli} SCOP: d.15.10.1 d.67.1.1 PDB: 1tje_A 1tkg_A* 1tky_A*
Probab=1.00 E-value=1 Score=215.39 Aligned_cols=170 Identities=18% Similarity=0.301 Sum_probs=139.2
Q ss_pred EECCEEEEEEEEECCCCCCCCCCEEEEEEEHHHH-HHHHHHCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCC
Q ss_conf 9799999999852355547899989999802333-334212149999999999881994001244212996699805999
Q 001826 605 IYGGFVIHIGSLTEGAGRFSVGEEVICKVDYDRR-KLIAPNHTCTHMLNFALREVLGDHVDQKGSVVLPEKLRFDFSHGK 683 (1009)
Q Consensus 605 ~~~g~i~H~~~~~~~~~~l~~G~~V~~~VD~~rR-~~~m~~HTAtHLL~aALr~vlg~~v~q~Gs~v~~d~lr~Df~~~~ 683 (1009)
+.+|.+++. . .++..|+.|+ .|+++.+ -..|++|||+|||++|++++||......| +..++++||||++..
T Consensus 39 kvNg~l~dL---~---~~l~~~~~ve-~it~~~~~g~~~~~HS~~HlL~~A~~~~~~~~~~~~g-~~~~~g~y~d~~~~~ 110 (224)
T 1tke_A 39 RVNGELVDA---C---DLIENDAQLS-IITAKDEEGLEIIRHSCAHLLGHAIKQLWPHTKMAIG-PVIDNGFYYDVDLDR 110 (224)
T ss_dssp EETTEEEET---T---CCBCSCEEEE-EECTTSHHHHHHHHHHHHHHHHHHHHHHSTTCEECCC-CEETTEEEEEEECSS
T ss_pred EECCEEECC---C---EECCCCCEEE-EEECCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEC-CCCCCEEEEEEECCC
T ss_conf 999999306---3---6748998699-9845736689999999999999999998799679878-845885799983799
Q ss_pred CCCHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHCCCCC------HHHCCC-C-CCCCEEEEEECCCCCCCCCCCCCCC
Q ss_conf 9998799999999999998189879999298889600170------111177-5-8998799994666200025978875
Q 001826 684 PVDPEHLRRIESIVNEQIKAELDVFSKEATLAEAKCINGL------RAVFGE-V-YPDPVRVVAIGRKVEDLLADPENKE 755 (1009)
Q Consensus 684 ~lt~eeL~~IE~~vNe~I~~~~pV~~~~~~~eeA~~~~g~------~~~f~e-~-y~d~VRVV~Ig~~~~~~~~~~~~~~ 755 (1009)
+++++++.+||++||++|++|+||++.++++++|.+++.. ..++++ . +.+.||++++|
T Consensus 111 ~~t~edl~~IE~~m~~iI~~~~pi~~~~~~~~eA~~~f~~~~~~~k~~l~~~~~~~~~~v~vy~~g-------------- 176 (224)
T 1tke_A 111 TLTQEDVEALEKRMHELAEKNYDVIKKKVSWHEARETFANRGESYKVSILDENIAHDDKPGLYFHE-------------- 176 (224)
T ss_dssp CCCHHHHHHHHHHHHHHHTTCCBCEEEECCHHHHHHHHHHTTCHHHHHHHHHHSCTTCCCEEEEET--------------
T ss_pred CCCHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHCCCCHHHHHHCCCCCCCCEEEEEEEC--------------
T ss_conf 899999999999999998479987999966999999998749915799850126889806799828--------------
Q ss_pred CCCEEEEECCCCCCCCCCCCCCEEEEEECCC-------CCCCEEEEEECCH
Q ss_conf 5404685206878566224565899531034-------6883699998043
Q 001826 756 WLSISAELCGGTHLSNTREAEAFALLSEEGI-------AKGIRRITAVTTG 799 (1009)
Q Consensus 756 ~~~~d~e~CgGTHV~nTgeIg~fkI~~~~~v-------~~Gi~RI~~vtG~ 799 (1009)
++ .++||||||+|||+|+.|+|+++++. +++++||++++++
T Consensus 177 --~~-~dlC~G~Hv~~Tg~i~~fkl~~~~~~yw~g~~~~~~lqRiyg~a~~ 224 (224)
T 1tke_A 177 --EY-VDMCRGPHVPNMRFCHHFKLMKTAGAYWRGDSNNKMLQRIYGTAWA 224 (224)
T ss_dssp --TE-EEEESCCCCSBGGGCCCEEEEEEEEEEGGGCTTSCEEEEEEEEECC
T ss_pred --CE-EEECCCCCCCCCCCCCEEEEEEECCEEECCCCCCCEEEEEEEECCC
T ss_conf --98-8977886777675363579987256067378888316999876269
No 10
>1v4p_A Alanyl-tRNA synthetase; alanine-tRNA ligase, riken structural genomics/proteomics initiative RSGI, structural genomics; 1.45A {Pyrococcus horikoshii} SCOP: d.67.1.2 PDB: 1wxo_A 1v7o_A 1wnu_A 3rhu_A 3rfn_A
Probab=1.00 E-value=1 Score=199.56 Aligned_cols=144 Identities=22% Similarity=0.192 Sum_probs=118.2
Q ss_pred HHHHHCHHHHHHHHHHHHHHCCCCCCCCC-CCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHH
Q ss_conf 34212149999999999881994001244-21299669980599999987999999999999981898799992988896
Q 001826 640 LIAPNHTCTHMLNFALREVLGDHVDQKGS-VVLPEKLRFDFSHGKPVDPEHLRRIESIVNEQIKAELDVFSKEATLAEAK 718 (1009)
Q Consensus 640 ~~m~~HTAtHLL~aALr~vlg~~v~q~Gs-~v~~d~lr~Df~~~~~lt~eeL~~IE~~vNe~I~~~~pV~~~~~~~eeA~ 718 (1009)
..|++|||+|||++|++++||.++.+.++ .+.++++|+||++..+++++++.+||++||++|++|+||++.++++++|.
T Consensus 4 ~~~~~HSa~HlL~~Al~~~~~~~~~~~~~~~i~~~~~~~~~d~~~~~t~e~l~~IE~~~n~~I~~~~pi~~~~~~~~eA~ 83 (157)
T 1v4p_A 4 IEVRTHSALHVVKGAVVKVLGSEAKWTYSTYVKGNKGVLIVKFDRKPSDEEIREIERLANEKVKENAPIKIYELPREEAE 83 (157)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCGGGCCEEEEEEETTEEEEEEECSSCCCHHHHHHHHHHHHHHHHHTCBCEEEEEEHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCEEECCCEECCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHH
T ss_conf 37776779999999999984978378127456479838999809999999999999999999981999799995899999
Q ss_pred CCCCCHHHCCCCCC---CCEEEEEECCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCEEEEEECC-CCCCCEEEE
Q ss_conf 00170111177589---98799994666200025978875540468520687856622456589953103-468836999
Q 001826 719 CINGLRAVFGEVYP---DPVRVVAIGRKVEDLLADPENKEWLSISAELCGGTHLSNTREAEAFALLSEEG-IAKGIRRIT 794 (1009)
Q Consensus 719 ~~~g~~~~f~e~y~---d~VRVV~Ig~~~~~~~~~~~~~~~~~~d~e~CgGTHV~nTgeIg~fkI~~~~~-v~~Gi~RI~ 794 (1009)
++++...+-.+..| +.||+|+|| ++|+++||||||+|||+||.|+|+++++ .+++..||.
T Consensus 84 ~~f~~~~~~~~~~~~~~~~vrv~~ig----------------~~~~~~C~GtHv~~Tg~I~~fki~~~~~~~~~~~l~v~ 147 (157)
T 1v4p_A 84 KMFGEDMYDLFPVPEDVRILKVVVIE----------------DWNVNACNKEHTKTTGEIGPIKIRKVRFRKSKGLLEIH 147 (157)
T ss_dssp HHHGGGGSCSSCCCTTCCEEEEEEET----------------TTEEEECCSCCCSBGGGTCCEEEEEEEEETTTTEEEEE
T ss_pred HHHCCCCCCCCCCCCCCCEEEEEEEC----------------CEEEECCCCCCCCCHHHCCEEEEEEEEECCCCCEEEEE
T ss_conf 76483435543488778769999989----------------93684899986687212652999999803788489999
Q ss_pred EECCH
Q ss_conf 98043
Q 001826 795 AVTTG 799 (1009)
Q Consensus 795 ~vtG~ 799 (1009)
+..++
T Consensus 148 ~~v~~ 152 (157)
T 1v4p_A 148 FELLE 152 (157)
T ss_dssp EEEC-
T ss_pred EEEEE
T ss_conf 99843
Done!