RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 001826
(1009 letters)
>2ztg_A Alanyl-tRNA synthetase; class-II aminoacyl-tRNA synthetase,
aminoacyl-tRNA synthetase, ATP-binding, cytoplasm,
ligase; HET: A5A; 2.20A {Archaeoglobus fulgidus}
Length = 739
Score = 720 bits (1861), Expect = 0.0
Identities = 165/773 (21%), Positives = 280/773 (36%), Gaps = 139/773 (17%)
Query: 63 VRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFANAGMNQYKPIFL-GTADPNTQLSKLTR 121
+R+ + FFE + H + PVV + A + ++P G A P
Sbjct: 65 MREYYLNFFERRGHGRIERYPVVARWRTDIYLTIASIADFQPFVTSGVAPP-----PANP 119
Query: 122 ACNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGD-----YFKNEAIEWAWELLT 176
+Q CIR +DLD VG+ H T FEM+ + +F Y+KNE + + ELL
Sbjct: 120 LTISQPCIRL----DDLDSVGRTGRHLTLFEMMAHHAFNYPGKEIYWKNETVAYCTELLN 175
Query: 177 KVYRLPADRLYATYFGGDEKAGLAPDNEARDIWLKFLPASRVLPFGCKDNFWEMGDTGPC 236
++ + + + K+ W G G
Sbjct: 176 ELG-VKKEDIVY-----------------------------------KEEPWAGG--GNA 197
Query: 237 GPCSEIHYDR---------TGNRDAASLVNNDDPTCIEIWNIVFIQFNRESDGSLKPLPA 287
GPC E + ++ N +
Sbjct: 198 GPCLEAIVGGLEVATLVFMNLEEHPEGDIEIKGARYRKMDNYIVDTGYGLERFVWASKGT 257
Query: 288 KHVDTGLGFERLTSILQ--NKMSNYDTDVFMPIFDAIQQATG------------------ 327
V + E + +I+ N N + + I + G
Sbjct: 258 PTVYDAIFPEVVDTIIDNSNVSFNREDERVRRIVAESSKLAGIMGELRGERLNQLRKSVA 317
Query: 328 ARPYSGKVGADDADKVDMAYRVVADHIRTLSFAIADGSCPGNEGREYVLRRILRRAVRYG 387
+ +ADH R + F + DG P N G Y+ R ++RR++R
Sbjct: 318 DTVGVSVEELEGIVVPLEKVYSLADHTRCILFMLGDGLVPSNAGAGYLARLMIRRSLRLA 377
Query: 388 SEVLKAQDGFFNGLVNIVVKVMGDVFPELKQREAHIREIIAAEEASFGKTLLKGIEKFKK 447
E L+ LV + K++G F + ++EI+ E+ + T+ KG ++
Sbjct: 378 EE-LEL-GLDLYDLVEMHKKILGFEFDVPL---STVQEILELEKERYRTTVSKGTRLVER 432
Query: 448 AAQDVQGKVLSGQDAFILWDTYGFPLDLTQLMAEERGLLVDIE-GFNNAMDEARERSRSA 506
+ K L D L+D++G P++L +A E+G V++ + + ++
Sbjct: 433 LVER--KKKLEKDDLIELYDSHGIPVELAVGIAAEKGAEVEMPKDIYAELAKRHSKAEKV 490
Query: 507 QNKQAGGAIVMDADATAALHKRGVLATDDSFKFIWFQDHKSVIKAIYTGSEFIESVVPGN 566
Q K + + AT + +++ D T EF V+
Sbjct: 491 QEK--KITLQNEYPAT---------------EKLYYDD--------PTLLEFEAEVIGVE 525
Query: 567 EVGIVLASSSFYAEQGGQIFDEGFIEGLFGSFYVRNVQIYGGFVIHIGSLTEGAGRFSVG 626
++L S+FY E GGQ D G++ G F V +V G V+H+ + VG
Sbjct: 526 GDFVILNRSAFYPESGGQDNDVGYLIANGGKFEVVDVLEADGVVLHVVK----GAKPEVG 581
Query: 627 EEVICKVDYDRRKLIAPNHTCTHMLNFALREVLGDHVDQKGSVVLPEKLRFDFSHGKPVD 686
+V +D D R +H+ TH+L ++L++VLG+HV Q G+ K R D +H +
Sbjct: 582 TKVKGVIDSDVRWRHMRHHSATHVLLYSLQKVLGNHVWQAGARKEFSKARLDVTHFRRPS 641
Query: 687 PEHLRRIESIVNEQIKAELDVFSKEATLAEAKCINGLRAVF--GEVYPDPVRVVAIGRKV 744
E ++ IE + N +I A + + EA+ G ++ G +RVV +G
Sbjct: 642 EEEIKEIEMLANREILANKPIKWEWMDRIEAERKFGF-RLYQGGVPPGRKIRVVQVG--- 697
Query: 745 EDLLADPENKEWLSISAELCGGTHLSNTREAEAFALLSEEGIAKGIRRITAVT 797
+ CGGTH +T E +L E I G+ R
Sbjct: 698 --------------DDVQACGGTHCRSTGEIGMLKILKVESIQDGVIRFEFAA 736
>1yfs_A Alanyl-tRNA synthetase; alpha-beta fold, helix-loop-helix motif,
amino acid binding, ligase; 2.08A {Aquifex aeolicus}
SCOP: a.203.1.1 d.104.1.1 PDB: 1yfr_A* 1riq_A 1yft_A
1ygb_A 3htz_A
Length = 465
Score = 662 bits (1711), Expect = 0.0
Identities = 202/461 (43%), Positives = 285/461 (61%), Gaps = 34/461 (7%)
Query: 63 VRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFANAGMNQYKPIFLGTADPNTQLSKLTRA 122
+R+ F FFE K H KS+P+VP NDPTLLF NAGM +K +FLG RA
Sbjct: 8 IRELFLSFFEKKGHTRVKSAPLVPENDPTLLFVNAGMVPFKNVFLGLEKRPY-----KRA 62
Query: 123 CNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWAWELLTKVYRLP 182
+ QKC+R GKHNDL+ VG + HHTFFEMLGN+SFGDYFK EAIE+AWE +T+V +LP
Sbjct: 63 TSCQKCLRVSGKHNDLEQVGYTSRHHTFFEMLGNFSFGDYFKKEAIEYAWEFVTEVLKLP 122
Query: 183 ADRLYATYFGGDEKAGLAPDNEARDIWLKF--LPASRVLPFGCKDNFWEMGDTGPCGPCS 240
++LY + + DE EA IW + +P+ R+ G +DNFW+MGD GPCGP S
Sbjct: 123 KEKLYVSVYKDDE--------EAYRIWNEHIGIPSERIWRLGEEDNFWQMGDVGPCGPSS 174
Query: 241 EIHYDRTGNRDAASLVNNDDPTCIEIWNIVFIQFNRESDGSLKPLPAKHVDTGLGFERLT 300
EI+ DR + D +EIWN+VF+Q+NR+ +G L PLP ++DTG+G ER+
Sbjct: 175 EIYVDRGEEYE-------GDERYLEIWNLVFMQYNRDENGVLTPLPHPNIDTGMGLERIA 227
Query: 301 SILQNKMSNYDTDVFMPIFDAIQQATGARPYSGKVGADDADKVDMAYRVVADHIRTLSFA 360
S+LQ K SN++ D+ P+ ++ +G + + + D+A RV+ADH+R ++FA
Sbjct: 228 SVLQGKNSNFEIDIIFPLIQFGEEVSGKKY-------GEKFETDVALRVIADHLRAITFA 280
Query: 361 IADGSCPGNEGREYVLRRILRRAVRYGSEVLKAQDGFFNGLVNIVVKVMGDVFPELKQRE 420
I+DG P NEGR YV+RRILRRA+R+G L ++ F V++VV +M + +PEL+
Sbjct: 281 ISDGVIPSNEGRGYVIRRILRRAMRFG-YKLGIENPFLYKGVDLVVDIMKEPYPELELSR 339
Query: 421 AHIREIIAAEEASFGKTLLKGIEKFKKAAQDVQ---GKVLSGQDAFILWDTYGFPLDLTQ 477
++ I+ EE F KTL G+E ++ Q K LSG++ F +DTYGFP+DL
Sbjct: 340 EFVKGIVKGEEKRFIKTLKAGMEYIQEVIQKALEEGRKTLSGKEVFTAYDTYGFPVDLID 399
Query: 478 LMAEERGLLVDIEGFNNAMDEARERSRSAQNKQAGGAIVMD 518
+A E+GL +D+EGF ++E RER+R K +
Sbjct: 400 EIAREKGLGIDLEGFQCELEEQRERARKHF-KVEAKKVKPV 439
>3hy0_A Alanyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase, protein
biosynthesis, NUC binding, amino acid-binding,
ATP-binding, metal-binding; HET: G5A EPE; 1.90A
{Escherichia coli} PDB: 3hxz_A* 3hy1_A* 3hxv_A* 3hxu_A*
3hxw_A* 3hxx_A* 3hxy_A*
Length = 441
Score = 660 bits (1705), Expect = 0.0
Identities = 210/459 (45%), Positives = 282/459 (61%), Gaps = 38/459 (8%)
Query: 63 VRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFANAGMNQYKPIFLGTADPNTQLSKLTRA 122
+R F FF K H SS +VP NDPTLLF NAGMNQ+K +FLG N +RA
Sbjct: 7 IRQAFLDFFHSKGHQVVASSSLVPHNDPTLLFTNAGMNQFKDVFLGLDKRNY-----SRA 61
Query: 123 CNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWAWELLTK--VYR 180
+Q+C+RAGGKHNDL++VG HHTFFEMLGN+SFGDYFK +AI +AW LLT +
Sbjct: 62 TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKLDAILFAWLLLTSEKWFA 121
Query: 181 LPADRLYATYFGGDEKAGLAPDNEARDIWLKF--LPASRVLPFGCK-------DNFWEMG 231
LP +RL+ T + D+ EA +IW K +P R++ G DNFW+MG
Sbjct: 122 LPKERLWVTVYESDD--------EAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMG 173
Query: 232 DTGPCGPCSEIHYDRTGNRDAAS--LVNNDDPTCIEIWNIVFIQFNRESDGSLKPLPAKH 289
DTGPCGPC+EI YD + D IEIWNIVF+QFNR++DG+++PLP
Sbjct: 174 DTGPCGPCTEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPS 233
Query: 290 VDTGLGFERLTSILQNKMSNYDTDVFMPIFDAIQQATGARPYSGKVGADDADKVDMAYRV 349
VDT +G ER+ ++LQ+ SNYD D+F + A+ + TGA D + + RV
Sbjct: 234 VDTAMGLERIAAVLQHVNSNYDIDLFRTLIQAVAKVTGA-----------TDLSNKSLRV 282
Query: 350 VADHIRTLSFAIADGSCPGNEGREYVLRRILRRAVRYGSEVLKAQDGFFNGLVNIVVKVM 409
+ADHIR+ +F IADG P NE R YVLRRI+RRAVR+G +L A++ FF LV ++ VM
Sbjct: 283 IADHIRSCAFLIADGVMPSNENRGYVLRRIIRRAVRHG-NMLGAKETFFYKLVGPLIDVM 341
Query: 410 GDVFPELKQREAHIREIIAAEEASFGKTLLKGIEKFKKAAQDVQGKVLSGQDAFILWDTY 469
G +LK+++A + +++ EE F +TL +G+ + + G L G+ AF L+DTY
Sbjct: 342 GSAGEDLKRQQAQVEQVLKTEEEQFARTLERGLALLDEELAKLSGDTLDGETAFRLYDTY 401
Query: 470 GFPLDLTQLMAEERGLLVDIEGFNNAMDEARERSRSAQN 508
GFP+DLT + ER + VD GF AM+E R R+R A
Sbjct: 402 GFPVDLTADVCRERNIKVDEAGFEAAMEEQRRRAREASG 440
>2zze_A Alanyl-tRNA synthetase; ligase, hydrolase; HET: MLY; 2.16A
{Pyrococcus horikoshii} PDB: 2zzf_A 2zzg_A*
Length = 752
Score = 501 bits (1290), Expect = e-164
Identities = 175/796 (21%), Positives = 300/796 (37%), Gaps = 168/796 (21%)
Query: 63 VRDTFFKFFEDKN---HVNWKSSPVVPVNDPTLLFANAGMNQYKP-IFLGTADPNTQLSK 118
+R+ F +FFE H PV+P +L A + ++P + G ADP
Sbjct: 62 MREXFLRFFEXHEIYPHGRVXRYPVLPRWRDDVLLVGASIMDFQPWVISGEADPPA---- 117
Query: 119 LTRACNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGD-----YFKNEAIEWAWE 173
+Q IR D+D+VG H T FEM+ + +F Y+ +E +E A+E
Sbjct: 118 -NPLVISQPSIR----FTDIDNVGITGRHFTIFEMMAHHAFNYPGXPIYWMDETVELAFE 172
Query: 174 LLTKVYRLPADRLYATYFGGDEKAGLAPDNEARDIWLKFLPASRVLPFGCKDNFWEMGDT 233
TK + + + K+N W G
Sbjct: 173 FFTKELXMXPEDITF-----------------------------------KENPWAGG-- 195
Query: 234 GPCGPCSEIHYDRTGNRDAASLVNNDDPTCIEIWNIVFIQFNRESDGS------------ 281
G GP E+ Y +E+ +VF+Q+ + +
Sbjct: 196 GNAGPAFEVLYR-----------------GLEVATLVFMQYXXAPENAPQDQVVVIXGEK 238
Query: 282 LKPLPAKHVDTGLGFERLTSILQNKMSNYDTDVFMPI----------------------- 318
P+ VDTG G ERL + Q + YD + +
Sbjct: 239 YIPMETXVVDTGYGLERLVWMSQGTPTAYDAVLGYVVEPLXXMAGIEKIDEKILMENSRL 298
Query: 319 -----------FDAIQQATGARPYSGKVGADDADKVDMAYRVVADHIRTLSFAIADGSCP 367
+++ R + A + +ADH + L+F +ADG P
Sbjct: 299 AGMFDIEDLGDLRYLREQVAKRVGITVEELEKAIRPYELIYAIADHTKALTFMLADGVVP 358
Query: 368 GNEGREYVLRRILRRAVRYGSEVLKAQDGFFNGLVNIVVKVMGDVFPELKQREAHIREII 427
N Y+ R ++R+++R+ E+ + + +V + + + FPE + E I E+I
Sbjct: 359 SNVXAGYLARLLIRKSIRHLREL--GLEVPLSEIVALHIXELHKTFPEFXEMEDIILEMI 416
Query: 428 AAEEASFGKTLLKGIEKFKKAAQDVQ---GKVLSGQDAFILWDTYGFPLDLTQLMAEERG 484
EE + +TL +G + ++ ++ K + + ++++G ++ +AE+ G
Sbjct: 417 ELEEKXYAETLRRGSDLVRREIAKLKKKGIKEIPVEXLVTFYESHGLTPEIVXEIAEKEG 476
Query: 485 LLVDI-EGFNNAMDEARERSRSAQNKQAGGAIVMDADATAALHKRGVLATDDSFKFIWFQ 543
+ V+I + F + + + ER++ + ++ ++ + ++++
Sbjct: 477 VKVNIPDNFYSMVAKEAERTKEEKGEELVDFELLKDLPDT--------------RRLYYE 522
Query: 544 DHKSVIKAIYTGSEFIESVVPGNEVGIVLASSSFYAEQGGQIFDEGFIEGLFGSFYVRNV 603
D EF V+ ++L +++FY E GGQ +D G + V NV
Sbjct: 523 D--------PFMXEFDAXVLRVIXDWVILDATAFYPEGGGQPYDTGVLIVNGREVXVTNV 574
Query: 604 QIYGGFVIHIGSLTEGAGRFSVGEEVICKVDYDRRKLIAPNHTCTHMLNFALREVLGDHV 663
Q G +IH E G F G V +D+ RR +HT TH+L AL VLG HV
Sbjct: 575 QXVGXVIIHXV---EDPGAFXEGMIVHGXIDWXRRIQHMRHHTGTHVLMGALVRVLGRHV 631
Query: 664 DQKGSVVLPEKLRFDFSHGKPVDPEHLRRIESIVNEQIKAELDVFSKEATLAEAKCINGL 723
Q GS + + R D SH + E L IE + N + + V + A+ G
Sbjct: 632 WQAGSQLTTDWARLDISHYXRISEEELXEIEMLANRIVMEDRXVTWEWLPRTTAEQXYGF 691
Query: 724 RAVF--GEVYPDPVRVVAIGRKVEDLLADPENKEWLSISAELCGGTHLSNTREAEAFALL 781
++ G V +RVV I + CGGTHL +T +L
Sbjct: 692 -RLYQGGVVPGREIRVVXIE----------------DWDVQACGGTHLPSTGLVGPIXIL 734
Query: 782 SEEGIAKGIRRITAVT 797
E I G+ RI
Sbjct: 735 RTERIQDGVERIIFAC 750
>2e1b_A PH0108, 216AA long hypothetical alanyl-tRNA synthetase;
zinc-binding motif, trans-editing enzyme, structural
genomics, NPPSFA; 2.70A {Pyrococcus horikoshii} SCOP:
b.43.3.6 d.67.1.2
Length = 216
Score = 227 bits (581), Expect = 1e-68
Identities = 57/240 (23%), Positives = 90/240 (37%), Gaps = 44/240 (18%)
Query: 557 EFIESVVPGNEVGIVLASSSFYAEQGGQIFDEGFIEGLFGSFYVRNVQIYGGFVIHIGSL 616
E V+ + I+L + FY GGQ D G I G V +V +
Sbjct: 17 EAKGRVLEIRDNAILLDQTIFYPTGGGQPHDRGTING----VEVLDVYKDEEGNVWHV-- 70
Query: 617 TEGAGRFSVGEEVICKVDYDRRKLIAPNHTCTHMLNFALREVLGDHVDQ-KGSVVLPEKL 675
+ +F VG+EV K+D+D R + HT H+L L EVLG+ Q GS + EK
Sbjct: 71 VKEPEKFKVGDEVELKIDWDYRYKLMRIHTGLHLLEHVLNEVLGEGNWQLVGSGMSVEKG 130
Query: 676 RFDFSHGKPVDPEHLRRIESIVNEQIKAELDVFSKEATLAEAKCINGLRAVFGEVYPDPV 735
R+D ++ + ++ +I S+ N+ + G ++ E
Sbjct: 131 RYDIAYPENLNKY-KEQIISLFNKYVDE-----------------GGEVKIWWE---GDR 169
Query: 736 RVVAIGRKVEDLLADPENKEWLSISAELCGGTHLSNTREAEAFALLSEEGIAKGIRRITA 795
R I CGGTH+ + +E L I +G +R+
Sbjct: 170 RYTQIR----------------DFEVIPCGGTHVKDIKEIGHIKKLKRSSIGRGKQRLEM 213
>3kew_A DHHA1 domain protein; structural genomics, PSI-2, tRNA synthase,
protein structure initiative; 2.00A {Clostridium
perfringens}
Length = 241
Score = 224 bits (573), Expect = 3e-67
Identities = 53/248 (21%), Positives = 88/248 (35%), Gaps = 32/248 (12%)
Query: 559 IESVVPGNEVGIVLASSSFYAEQGGQIFDEGFIEGLFGSFYVRNVQIYGGFVIHIGSLTE 618
IE + ++L ++F+ GGQ+ D G I+G V +V G V H+
Sbjct: 21 IEVKEIDGKFHVLLDQTAFFPGGGGQMGDLGLIDG----IKVLDVYEEEGKVYHVLE--- 73
Query: 619 GAGRFSVGEEVICKVDYDRRKLIAPNHTCTHMLNFALREVLGDHVDQKGSVVLPEKLRFD 678
+ + C++D++RR H H+L+ ++ G + G + E D
Sbjct: 74 --KEPKKLKNLQCELDWERRFDGMQQHLGQHLLSGCFYDLFGANT--CGFHLGKEISTVD 129
Query: 679 FSHGKPVDPEHLRRIESIVNEQIKAELDVFSKEATLAEAKCINGLRAVFGEVYPDPVRVV 738
+D + +R E N I L+V S + E K + R + +R+V
Sbjct: 130 IVG--FLDEKTIREAEKEANRLIFENLEVKSYAPSKKELKKV-KTRRAL-PKTDEEIRIV 185
Query: 739 AIGRKVEDLLADPENKEWLSISAELCGGTHLSNTREAEAFALLSEEGIAKGIRRITAVTT 798
I + C G H NTR+ + + E K RI V
Sbjct: 186 EIV----------------GLDLNACCGVHPRNTRDLQVIKIRRWEKH-KNATRIEYVAG 228
Query: 799 GLAYKAFE 806
A
Sbjct: 229 NRAVSEGH 236
>1v4p_A Alanyl-tRNA synthetase; alanine-tRNA ligase, riken structural
genomics/proteomics initiative RSGI, structural
genomics; 1.45A {Pyrococcus horikoshii} SCOP: d.67.1.2
PDB: 1wxo_A 1v7o_A 1wnu_A 3rhu_A 3rfn_A
Length = 157
Score = 165 bits (419), Expect = 3e-47
Identities = 32/167 (19%), Positives = 53/167 (31%), Gaps = 33/167 (19%)
Query: 638 RKLIAPNHTCTHMLNFALREVLGDHVDQ-KGSVVLPEKLRFDFSHGKPVDPEHLRRIESI 696
+ H+ H++ A+ +VLG + V K + E +R IE +
Sbjct: 2 YSIEVRTHSALHVVKGAVVKVLGSEAKWTYSTYVKGNKGVLIVKFDRKPSDEEIREIERL 61
Query: 697 VNEQIKAELDVFSKEATLAEAKCINGLRAVFGEVYPDP---------VRVVAIGRKVEDL 747
NE++K + E EA+ +FGE D ++VV I
Sbjct: 62 ANEKVKENAPIKIYELPREEAE------KMFGEDMYDLFPVPEDVRILKVVVIE------ 109
Query: 748 LADPENKEWLSISAELCGGTHLSNTREAEAFALLSEE-GIAKGIRRI 793
+ C H T E + +KG+ I
Sbjct: 110 ----------DWNVNACNKEHTKTTGEIGPIKIRKVRFRKSKGLLEI 146
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 62.6 bits (151), Expect = 6e-10
Identities = 78/607 (12%), Positives = 161/607 (26%), Gaps = 186/607 (30%)
Query: 240 SEIHYDRTGNRDAASLVNND---DPTCIEIWNIVFIQF-NRESDGSLKPLPAKHVDTGLG 295
E Y +D S+ + + C ++ ++ E D + +K +G
Sbjct: 12 GEHQY---QYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIM---SKDAVSGT- 64
Query: 296 FERLTSILQNKMSNYDTDVFMPIFDAIQQATGARPYSGKVGADDADKVDMAYRVVADHIR 355
RL L +K F+ ++ +++ Y+ + I+
Sbjct: 65 -LRLFWTLLSKQEEM-VQKFV---------------------EEVLRIN--YKFLMSPIK 99
Query: 356 TLSFAIADGSCPGNEGREYVLRRILRRAVRYGSEVLKAQDGFFNGLVNIVVKVMGDVFPE 415
T P R Y+ +R D +N VF +
Sbjct: 100 TEQRQ------PSMMTRMYIEQR----------------DRLYND---------NQVFAK 128
Query: 416 LK-QREAHIREII-AAEEAS------------FGKTLLKGIEKFKKAAQDVQ-GKVLSGQ 460
R ++ A E GKT + A KV
Sbjct: 129 YNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWV--------ALDVCLSYKVQCKM 180
Query: 461 DAFILWDTYGFPLDLTQLMAEERGLLVDIEGFNNAMDE--ARERSRSAQNKQAGGAIVMD 518
D I W ++ + LL I+ + + + + R + ++
Sbjct: 181 DFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKS 240
Query: 519 ADATAALHKRGVLATDDSFKFIWFQDHKSVIKA--------IYTGSEFIESVVPGN---E 567
++ +L + + + A + T + + +
Sbjct: 241 KP-----YENCLLVLLN----VQ---NAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTH 288
Query: 568 VGIVLASSSFYAEQGGQIFDEGFIEGLFGSFYVRNV-----QIYGGFVIHIG----SLTE 618
+ + S + ++ + L + ++ + S+ +
Sbjct: 289 ISLDHHSMTLTPDEV---------KSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRD 339
Query: 619 GAGRFSVGEEVICKVDYDR-RKLIAPNHTCTHMLNFA-LRE------VLGDHVDQKGSVV 670
G + + V+ D+ +I + ++L A R+ V
Sbjct: 340 GLATW----DNWKHVNCDKLTTIIE---SSLNVLEPAEYRKMFDRLSVFPPSAH------ 386
Query: 671 LPEK-LRFDFSHGKPVDPE----HLRRIESIVNEQIKAE--------LDVFSKEATLAEA 717
+P L + D L + S+V +Q K L++ K
Sbjct: 387 IPTILLSLIWFDVIKSDVMVVVNKLHK-YSLVEKQPKESTISIPSIYLELKVKLENEYA- 444
Query: 718 KCINGLRAVFGEVYPDPVRVVAIGRKVEDLLADPENKEWLS-ISAELCGGTHLSNTREAE 776
L + Y P +DL+ ++ + S I G HL N E
Sbjct: 445 -----LHRSIVDHYNIPK-----TFDSDDLIPPYLDQYFYSHI------GHHLKNIEHPE 488
Query: 777 AFALLSE 783
L
Sbjct: 489 RMTLFRM 495
Score = 51.8 bits (123), Expect = 1e-06
Identities = 94/671 (14%), Positives = 176/671 (26%), Gaps = 222/671 (33%)
Query: 138 LDDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWAWELLTKVYRLPAD--RLYATY----F 191
L ++ E+L +Y ++ + R P+ R+Y +
Sbjct: 71 LLSKQEEMVQKFVEEVLRI----NY------KFLMSPIKTEQRQPSMMTRMYIEQRDRLY 120
Query: 192 GGDEKAGLAPDNEARD-------IWLKFL-PASRVLPFGCKDNFWEMGDTGPCGPCSEIH 243
++ A N +R L L PA VL G + G G + +
Sbjct: 121 NDNQV--FAKYNVSRLQPYLKLRQALLELRPAKNVLIDG-------VL--G-SGK-TWV- 166
Query: 244 YDRTGNRDAASLVNNDDPTCIEIWNIVFIQF-NRESDGSLKPLPAKHVDTGLGFERLTSI 302
A + + C + I ++ N S ++ E L +
Sbjct: 167 --------ALDVCLSYKVQCKMDFKIFWLNLKNCNSPETV-------------LEMLQKL 205
Query: 303 LQNKMSNYDTDVFMPIFDAIQQATGARPYSGKVGADDADK------VDMAYR---VVADH 353
L N+ + + K+ Y +V +
Sbjct: 206 LYQIDPNW-------------TSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLN 252
Query: 354 IRTLSFAIA-DGSCPGNEGREYVLRRILRRAVRYGSEVLKAQDGFFNGLVNIVVK--VMG 410
++ A + SC +IL + + L +
Sbjct: 253 VQNAKAWNAFNLSC-----------KIL---------LTTRFKQVTDFLSAATTTHISLD 292
Query: 411 DVFPELKQREAHIREIIAAEEASFGKTLLKGIEKFKKAAQDVQGKVLSG-----QDAFIL 465
L E ++ K L + + + LS +D
Sbjct: 293 HHSMTLTPDEV---------KSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLAT 343
Query: 466 WDTYGFPL--DLTQLM---------AEERGLLVDIEGFN--------------NAMDEAR 500
WD + LT ++ AE R + + F + ++
Sbjct: 344 WDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSD 403
Query: 501 ERSRSAQNKQAGGAIVMDADATAALHKRGVLATDDSFKFIWFQDHKSVIKAIYTGSEFIE 560
+V++ LHK ++ ++ I +IY +E
Sbjct: 404 VM------------VVVN-----KLHKYSLVEK-------QPKESTISIPSIY-----LE 434
Query: 561 SVVPGNEVG-----IVLASSSFYAEQGGQIFDEGFIEGLFGSFYVRNVQIYGGFVIHIG- 614
V IV Y D+ L FY HIG
Sbjct: 435 LKVKLENEYALHRSIV----DHYNIPKTFDSDDLIPPYLDQYFYS-----------HIGH 479
Query: 615 --SLTEGAGRFSVGEEVICKVDYD--RRKLIAPNHTCTHMLNFA-LREVLGDHVDQKGSV 669
E R ++ V +D+ +K+ H T + L
Sbjct: 480 HLKNIEHPERMTLFRMVF--LDFRFLEQKIR---HDSTAWNASGSILNTLQQ-------- 526
Query: 670 VLPEKLRFDFSHGKPVDPEHLRRIESIVNEQIKAELDVF-SKEATLAEAKCINGLRAVFG 728
L+F + DP++ R + +I++ K E ++ SK L L A
Sbjct: 527 -----LKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRI----ALMAEDE 577
Query: 729 EVYPDPVRVVA 739
++ + + V
Sbjct: 578 AIFEEAHKQVQ 588
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 52.4 bits (125), Expect = 9e-07
Identities = 87/597 (14%), Positives = 168/597 (28%), Gaps = 217/597 (36%)
Query: 167 AIEWAWELLTKVYRLPADRLYATYFGGDEKA---GLAPDNEAR---DIWLKFLP--ASRV 218
++E + T + A +L F G A D+E ++ KFL +S V
Sbjct: 15 SLEHVLLVPTASF-FIASQLQEQ-FNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLV 72
Query: 219 LPFGCKDNFWEMGDTGPCGPCSEI------HYDRT--GNRD----AASLVNNDDPTCIEI 266
P G ++ ++ D AA L+ +D T ++
Sbjct: 73 EP-------------SKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKT 119
Query: 267 WNIV------FIQFNRESDGSLKPLPAKHVDTG-------LG--------FERLTSILQN 305
++ I R D + V G G FE L +
Sbjct: 120 KELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDL--- 176
Query: 306 KMSNYDT------DVFMPIFDAIQQATGARPYSGKV---GAD------DADKV-DMAYRV 349
Y T D+ + + + + KV G + + D Y +
Sbjct: 177 ----YQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLL 232
Query: 350 VADHIRTLSF--------------AIADGSCPGNEGREYVLRRILRRAVRYGSEVLKAQ- 394
+S A G PG LR L+ A + ++ A
Sbjct: 233 SI----PISCPLIGVIQLAHYVVTAKLLGFTPGE------LRSYLKGATGHSQGLVTAVA 282
Query: 395 -------DGFFNGLVNIVVKVM---G----DVFPELKQREAHIREIIAAEE--ASF---- 434
+ FF + + V+ G + +P + + + + E S
Sbjct: 283 IAETDSWESFFVSVRK-AITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSI 341
Query: 435 -G---KTLLKGIEKFKK---AAQDVQGKVLSGQDAFILWDTYGFPLDLTQLMAEERGLLV 487
+ + + K A + V+ +++G ++ + G P L
Sbjct: 342 SNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVV--S-GPPQSL------------ 386
Query: 488 DIEGFNNAMDEARERSRSAQNKQAGGAIVMDADATAALHKRGVLATDDSFKFIW------ 541
G N + +A+ S Q++ +R + KF
Sbjct: 387 --YGLNLTLRKAKAPSGLDQSR-------------IPFSERKL-------KFSNRFLPVA 424
Query: 542 --FQDHKSVIKAIYTGSEFIESVVPGNEVGIVLASSSFYAEQ-GGQIFDEGFIEGLFGSF 598
F H S + +V + SF A+ ++D +G
Sbjct: 425 SPF--H----------SHLLVPASDLINKDLVKNNVSFNAKDIQIPVYD--TFDG----- 465
Query: 599 YVRNVQIYGGFVIHIGSLTEGAGRFSVGEEVICK--VDYDRRKLIAPNHTCTHMLNF 653
++++ G + + + I + V ++ TH+L+F
Sbjct: 466 --SDLRVLSGSISE--RIVD----------CIIRLPVKWET----TTQFKATHILDF 504
Score = 51.6 bits (123), Expect = 1e-06
Identities = 49/288 (17%), Positives = 81/288 (28%), Gaps = 107/288 (37%)
Query: 364 GS-CPGNEGRE-Y----VLRRILRRAVRYGSEVLKAQDGFFNGLVNIVV---KVMGDVFP 414
GS G G + Y + + RA + + GF +++IV+ + F
Sbjct: 1625 GSQEQG-MGMDLYKTSKAAQDVWNRADNHFKDTY----GF--SILDIVINNPVNLTIHFG 1677
Query: 415 ELKQREAHIRE---IIAAEEASFGKTLLKGIEKFKKAAQDVQGKVLSGQDAFILWDTYGF 471
K + IRE + E GK + I FK+ + +
Sbjct: 1678 GEKGKR--IRENYSAMIFETIVDGKLKTEKI--FKEINEHSTSYTFRSEKGL-------- 1725
Query: 472 PLDLTQ-----LMA---------EERGLLVDIEGFNNAMDEARERSRSAQNKQAG---G- 513
L TQ L + +GL+ F AG G
Sbjct: 1726 -LSATQFTQPALTLMEKAAFEDLKSKGLIPADATF------------------AGHSLGE 1766
Query: 514 -------AIVMD-ADATAALHKRGVLATDDSFKFIWFQDHKSVIKAIYTGSEFIESVVPG 565
A VM + RG ++ VP
Sbjct: 1767 YAALASLADVMSIESLVEVVFYRG---------------------------MTMQVAVPR 1799
Query: 566 NEVGIVLASSSFYAEQGGQIFDEGFIEGLFGSFYVRNVQIYGGFVIHI 613
+E+G ++ A G++ E L + V V G+++ I
Sbjct: 1800 DELGR--SNYGMIAINPGRVAASFSQEAL--QYVVERVGKRTGWLVEI 1843
Score = 50.8 bits (121), Expect = 2e-06
Identities = 53/337 (15%), Positives = 103/337 (30%), Gaps = 119/337 (35%)
Query: 3 GLLRKTETASFVATARVL-LNP----SLTLAVTNHHHSLISRFSASAVAAMPGAD----- 52
G+ + A +V TA++L P S T H L+ +A A+A +
Sbjct: 242 GV---IQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLV---TAVAIAETDSWESFFVS 295
Query: 53 -PQVVEW------------PATKVRDTFFKFFEDKNHVNWKSSPVVPVNDPTL--LFAN- 96
+ + P T + + + + + SP++ +++ T +
Sbjct: 296 VRKAITVLFFIGVRCYEAYPNTSLPPSILE--DSLENNEGVPSPMLSISNLTQEQVQDYV 353
Query: 97 AGMNQYKP----IFLG----------TADP------NTQLSKL--------TRACNTQKC 128
N + P + + + P N L K +R +++
Sbjct: 354 NKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERK 413
Query: 129 IRAGGK--------HNDL-----DDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWAWELL 175
++ + H+ L D + KD + + + +
Sbjct: 414 LKFSNRFLPVASPFHSHLLVPASDLINKD------------------LVKNNVSFNAKDI 455
Query: 176 TKVYRLPADRLYATYFGGD--EKAGLAPDNEARDI------W--LKFLPASRVLPFGCKD 225
++P +Y T+ G D +G + I W A+ +L FG
Sbjct: 456 ----QIP---VYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFG--- 505
Query: 226 NFWEMGDTGPCGPCSEIHYDRTGNR--DAASLVNNDD 260
G G + + D TG R A +L N D
Sbjct: 506 ----PGGASGLGVLTHRNKDGTGVRVIVAGTLDINPD 538
Score = 49.3 bits (117), Expect = 8e-06
Identities = 99/556 (17%), Positives = 173/556 (31%), Gaps = 179/556 (32%)
Query: 5 LRKTETASFVATARVLLNPSLTLAVTNHHHS---LISRF---SASAVAAMP-GADPQVVE 57
L++ F L P+ A + + L+ +F +S V G QV+
Sbjct: 33 LQE----QFNKI---LPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLN 85
Query: 58 WPATKVRDTFFKFFEDK----NHVNWKSSPVVPVNDPTLLFANAGMNQYKP--IFLGTAD 111
FE+ N ++ ++ ++ ND TL+ + Y I
Sbjct: 86 --------LCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPF 137
Query: 112 PNTQLSKLTRACNTQKC-IRA--GGKHNDLDDVGKDTYHHTFFEM--LGNWSFGDY--FK 164
S L RA + A GG+ N D Y F E+ L + Y
Sbjct: 138 DKKSNSALFRAVGEGNAQLVAIFGGQGNT------DDY---FEELRDL----YQTYHVLV 184
Query: 165 NEAIEWAWELLTKVYRLPAD--RLYATYFGGD-----EKAGLAPDNEARDIWLKFLPASR 217
+ I+++ E L+++ R D +++ + E PD + +L +P S
Sbjct: 185 GDLIKFSAETLSELIRTTLDAEKVFTQGL--NILEWLENPSNTPDKD----YLLSIPIS- 237
Query: 218 VLPFGCKDNFWEMGDTGPCGPCSEIHYDRTGNRDAASLVNNDDPTCIEIWNIVFIQFNRE 277
P G HY T + P +
Sbjct: 238 -CPL--------------IGVIQLAHYVVTAK------LLGFTPG----------ELRSY 266
Query: 278 SDGSLKPLPAKHVDTGLGFERLTSILQNKMSNYDT-DVFMPIFDAIQQA------TGARP 330
G+ TG +T++ ++ D+ + F F ++++A G R
Sbjct: 267 LKGA----------TGHSQGLVTAVA---IAETDSWESF---FVSVRKAITVLFFIGVRC 310
Query: 331 YSGKVGADDADKVDMAYRVVADHIRTLSFAIADGSCPGNEG------------REYVLRR 378
Y AY + L +I + S NEG +E V
Sbjct: 311 YE-------------AYPNTS-----LPPSILEDSLENNEGVPSPMLSISNLTQEQVQDY 352
Query: 379 ILRRAVRYGSEVLKAQDGFFNGLVNIVVKVMGDVFPE-LKQREAHIREIIAAEEAS---- 433
+ + + + + NG N+VV G P+ L +R+ A
Sbjct: 353 V-NKTNSHLPAGKQVEISLVNGAKNLVVS--G--PPQSLYGLNLTLRKAKAPSGLDQSRI 407
Query: 434 -FGKTLLKGIEKF------------KKAA----QDVQGK--VLSGQDAFI-LWDTY-GFP 472
F + LK +F A+ +D+ + +D I ++DT+ G
Sbjct: 408 PFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDG-- 465
Query: 473 LDLTQLMAEERGLLVD 488
DL L +VD
Sbjct: 466 SDLRVLSGSISERIVD 481
Score = 49.3 bits (117), Expect = 8e-06
Identities = 61/358 (17%), Positives = 107/358 (29%), Gaps = 133/358 (37%)
Query: 614 GSLTEGAGR-----FSVGEEVICKVDYDRRKLIAPNHTCTHMLNFALREVLGDHVDQKGS 668
GS +G G ++V ++R A NH F++ +++ ++
Sbjct: 1625 GSQEQGMGMDLYKTSKAAQDV-----WNR----ADNHF-KDTYGFSILDIVINN------ 1668
Query: 669 VVLPEKLRFDFSHGKPVDPEHLRRI---------ESIVNEQIKAELDVFSKEATLAEAKC 719
P L F E +RI E+IV+ ++K E +F KE
Sbjct: 1669 ---PVNLTIHF------GGEKGKRIRENYSAMIFETIVDGKLKTE-KIF-KEINEHSTSY 1717
Query: 720 INGLRAVFGEVYPDPVRVVAIGRKVEDLLADPENKEWLSISAELCGGTH--LSNTREAEA 777
+ + LL+ + T L+ +A A
Sbjct: 1718 T----------FRSE----------KGLLSATQF-------------TQPALTLMEKA-A 1743
Query: 778 FALLSEEGIAKGIRRITAVTTG--------LAYKA----FEAACSLEKEVDDASKIEGSL 825
F L +G+ A G LA A E+ + V G
Sbjct: 1744 FEDLKSKGLIPA----DATFAGHSLGEYAALASLADVMSIESLVEV---V----FYRGMT 1792
Query: 826 LEKTVASLKSKVDGAAIPAPKKADIRAKIALLQNQVRKAQKKVAEENLQKAV-KVATETA 884
++ V + + IA+ +V + ++E LQ V +V T
Sbjct: 1793 MQVAVPRDELGRSNYGM-----------IAINPGRVAAS---FSQEALQYVVERVGKRTG 1838
Query: 885 ---EAAASN--GKPFCISRVEVGLDAAAVREA--VLKVIEQKG-----MPVMVFSTDE 930
E N + + + G D A+ VL I+ + + S +E
Sbjct: 1839 WLVEIVNYNVENQQYVAA----G-DLRALDTVTNVLNFIKLQKIDIIELQKS-LSLEE 1890
Score = 48.9 bits (116), Expect = 9e-06
Identities = 92/594 (15%), Positives = 170/594 (28%), Gaps = 185/594 (31%)
Query: 460 QDAFILW---DTYGFPLDLTQLMAEERGLLVDIEGFNNAMDEARERSRSAQNKQAGGAIV 516
Q+ F T GF D E L+ G+ + E S+ Q Q +
Sbjct: 34 QEQFNKILPEPTEGFAADDEPTTPAE--LVGKFLGY---VSSLVEPSKVGQFDQVLNLCL 88
Query: 517 MDADATAALHKRGV------LATDDSFKFIWFQDHKSVIKAIYTGSEFIESVVPGNEVGI 570
+ + L + L ++ + K +IK T +
Sbjct: 89 TEFE-NCYLEGNDIHALAAKLLQENDTTLV---KTKELIKNYITARIMAKRPFDKKSNSA 144
Query: 571 VLASSS-----FYAEQGGQIFDEGFIEGLFG---SFYVRNVQIYGGFVIHIGSLTEGAG- 621
+ + A GGQ G + F Y Q Y V G L + +
Sbjct: 145 LFRAVGEGNAQLVAIFGGQ----GNTDDYFEELRDLY----QTYHVLV---GDLIKFSAE 193
Query: 622 ------RFSVGEEVICKVDYDRRKLI-----APNH----TC---------THMLNFA-LR 656
R ++ E + + + + P+ + + ++
Sbjct: 194 TLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTA 253
Query: 657 EVLGDHVDQKGSVVLPEKLRFDFSHGKPVDPEHLRRIESIVNEQIKAELDVFSKEATLAE 716
++LG P +LR + G + +V AE D S E+
Sbjct: 254 KLLGFT---------PGELR-SYLKGA------TGHSQGLVTAVAIAETD--SWESFFVS 295
Query: 717 A-KCIN-----GLRA--VF----------------GEVYPDP-VRVVAIGRK-VEDLLAD 750
K I G+R + E P P + + + ++ V+D +
Sbjct: 296 VRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNK 355
Query: 751 -----PENKEWLSISAELCGGTHLSNTREAEAFAL----LSEEGIAKGIRRITAVTTGLA 801
P K + IS L N + + S G+ +R+ A +GL
Sbjct: 356 TNSHLPAGK-QVEIS--------LVNGA--KNLVVSGPPQSLYGLNLTLRKAKA-PSGL- 402
Query: 802 YKAFEAACSLEKEVDDASKIEGSLLEKTVASLKSKVDGAA----IPAP------KKADIR 851
D S+I S + K+ + + +P A
Sbjct: 403 ---------------DQSRIPFS---------ERKLKFSNRFLPVASPFHSHLLVPA--- 435
Query: 852 AKIALLQNQVRKAQKKVAEENLQKAVKVATETAE---AAASNGKPF---CISRVEVGLDA 905
L+ + K +++Q V T + + CI R+ V +
Sbjct: 436 --SDLINKDLVKNNVSFNAKDIQIPVY-DTFDGSDLRVLSGSISERIVDCIIRLPVKWET 492
Query: 906 AAVREAVLKVIE-----QKGMPVMVFSTDETTNKAVVCAGVPEKSDQS----KQ 950
+A +++ G+ V+ + T V+ AG + + KQ
Sbjct: 493 TTQFKA-THILDFGPGGASGLGVLTHRNKDGTGVRVIVAGTLDINPDDDYGFKQ 545
Score = 35.0 bits (80), Expect = 0.17
Identities = 44/296 (14%), Positives = 86/296 (29%), Gaps = 95/296 (32%)
Query: 265 EIWNIVFIQFNRESDGSLKPLPAKHVDTGLGFERLTSILQNKMSNYDTDVFMPIFD-AIQ 323
++WN +D H GF + I+ N N T F I+
Sbjct: 1644 DVWN--------RAD--------NHFKDTYGF-SILDIVINNPVNL-TIHFGGEKGKRIR 1685
Query: 324 QATGARPYSGKVGADDADKVDMAYRVVADHIRTLSFAIADGSCPGNEGREYVLRR----- 378
+ A + + D K + ++ + +H + +F + +L
Sbjct: 1686 ENYSAMIF--ETIVDGKLKTEKIFKEINEHSTSYTF----------RSEKGLLSATQFTQ 1733
Query: 379 --ILRRAVRYGS-EVLKAQ-----DGFFNG--------LVNIVVKVMGDVFP-----ELK 417
+ + + E LK++ D F G L + DV E+
Sbjct: 1734 PALT--LMEKAAFEDLKSKGLIPADATFAGHSLGEYAALA-----SLADVMSIESLVEV- 1785
Query: 418 QREAHIREIIAAEEASFGKTLLKGIEKFKKAAQDVQGKVLSGQDAFILWDTYGFPLDLTQ 477
R + + G + A + S + + + +
Sbjct: 1786 ---VFYRGMTMQVAVPRDEL---GRSNYGMIAINPGRVAASFSQEALQY--------VVE 1831
Query: 478 LMAEERGLLVDIEGFNNAMDEARERSRSAQNKQ---AGGAIVMDADATAALHKRGV 530
+ + G LV+I +N +N+Q AG +D T L+ +
Sbjct: 1832 RVGKRTGWLVEIVNYN------------VENQQYVAAGDLRALDT-VTNVLNFIKL 1874
Score = 33.5 bits (76), Expect = 0.53
Identities = 42/303 (13%), Positives = 79/303 (26%), Gaps = 106/303 (34%)
Query: 723 LRAVFGEVYPDPVRVVAIGRKVEDLLADPENKEWLSISAELCGG--THLSNTREAEAFAL 780
L+ F ++ P+P E AD E + AEL G ++S+ E
Sbjct: 33 LQEQFNKILPEP---------TEGFAADDE----PTTPAELVGKFLGYVSSLVEPSKVGQ 79
Query: 781 LSEEGIAKGIRRITAVTTGLAYKAFEAACSLEKEVDDASKIEGSLLEKTVASLKSKVDGA 840
+ + L FE ++ +A A
Sbjct: 80 FDQ--VLN-----------LCLTEFENCYLEGNDI------------HALA--------A 106
Query: 841 AIPAPKKADIRAKIALLQNQVRKAQKKVAEENLQKAVKVATETA--EAAAS-NGKPFCI- 896
+ + L++N + A ++ + +A A N + I
Sbjct: 107 KLLQENDTTLVKTKELIKNYIT------ARIMAKRPFDKKSNSALFRAVGEGNAQLVAIF 160
Query: 897 ---SRVEVGLD---------AAAVREAVLKVIEQKGMPVMVFSTDETTNKAVVCAGVPEK 944
+ + V + +I+ + + V G
Sbjct: 161 GGQGNTDDYFEELRDLYQTYHVLVGD----LIKFSAETLSELIRTTLDAEKVFTQG---- 212
Query: 945 SDQSKQLEVSEWLT-AALQPLKGRCGKGKGGLASGQVSGFYMGYKYKLPKSCILCL--LV 1001
L + EWL + P K L S +S P ++ + L
Sbjct: 213 ------LNILEWLENPSNTP-------DKDYLLSIPIS---------CP---LIGVIQLA 247
Query: 1002 SYL 1004
Y+
Sbjct: 248 HYV 250
Score = 33.5 bits (76), Expect = 0.53
Identities = 55/340 (16%), Positives = 89/340 (26%), Gaps = 146/340 (42%)
Query: 186 LYATYFGGDEKAGLAPDNEARDIWLKFLPASRVLPFGCKDNFWEMGDTGPCGPCSEIHYD 245
LY T A+D+ W D H+
Sbjct: 1635 LYKTS------------KAAQDV-------------------WNRADN---------HFK 1654
Query: 246 RTGNRDAASLVNNDDPTCIEIW-----------NIVFIQFNRESDGSLKPLPA-KHVD-- 291
T +V N +P + I N + F DG LK K ++
Sbjct: 1655 DTYGFSILDIVIN-NPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEH 1713
Query: 292 -TGLGFE------RLTSILQNKMSNYDTDVFMP--------IFDAIQQATGARP------ 330
T F T Q P F+ ++ G P
Sbjct: 1714 STSYTFRSEKGLLSATQFTQ------------PALTLMEKAAFEDLKSK-GLIPADATFA 1760
Query: 331 ------YSGKVGADDADKVDMAYRVVADHIR--TLSFAIADGS--------CPGNEGREY 374
Y+ D ++ VV R T+ A+ N GR
Sbjct: 1761 GHSLGEYAALASLADVMSIESLVEVV--FYRGMTMQVAVPRDELGRSNYGMIAINPGR-- 1816
Query: 375 VLRRILRRAVRYGSEVLKAQDGFFNGLVN-------IVVKVMGDVFPELKQREAHIREII 427
V + A++Y E + + G+ +VN V GD +
Sbjct: 1817 VAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYVAA--GD--------------LR 1860
Query: 428 AAEEASFGKTLLKGIEKFKK----------AAQDVQGKVL 457
A + + +L I K +K + ++V+G +
Sbjct: 1861 ALDTVT---NVLNFI-KLQKIDIIELQKSLSLEEVEGHLF 1896
Score = 29.6 bits (66), Expect = 6.3
Identities = 21/108 (19%), Positives = 35/108 (32%), Gaps = 22/108 (20%)
Query: 98 GMNQY------KPIFLGTADPNTQ------LSKLTRACNTQKCIRAGGKHNDLDDVGKDT 145
GM+ Y + ++ AD + + + + I GG+ GK
Sbjct: 1632 GMDLYKTSKAAQDVW-NRADNHFKDTYGFSILDIVINNPVNLTIHFGGEK------GKRI 1684
Query: 146 YHHTFFEMLGNWSFGDYFKNEAI-EWAWELLTKV-YRLPADRLYATYF 191
+ + M+ K E I + E T +R L AT F
Sbjct: 1685 REN-YSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQF 1731
>1nyr_A Threonyl-tRNA synthetase 1; ATP, threonine, ligase; HET: ATP; 2.80A
{Staphylococcus aureus} SCOP: c.51.1.1 d.15.10.1
d.67.1.1 d.104.1.1 PDB: 1nyq_A*
Length = 645
Score = 45.6 bits (109), Expect = 7e-05
Identities = 22/111 (19%), Positives = 46/111 (41%), Gaps = 24/111 (21%)
Query: 678 DFSHGKPVDPEHLRRIESIVNEQIKAELDVFSKEATLAEAKCINGLRAVF-GEVYPDPVR 736
DF + + + +IE + + + + + K + EA + +F + Y
Sbjct: 107 DFDIDQNISSDDFEQIEKTMKQIVNENMKIERKVVSRDEA------KELFSNDEY----- 155
Query: 737 VVAIGRKVEDLLADPENKEWLSISAE-----LCGGTHLSNTREAEAFALLS 782
K+E L+ E +++ ++ LC G H+ +T + + F LLS
Sbjct: 156 ------KLE-LIDAIPEDENVTLYSQGDFTDLCRGVHVPSTAKIKEFKLLS 199
>1qf6_A THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, mRNA, aminoacylati
translational regulation, protein/RNA, ligase-RNA
complex; HET: H2U AET G7M 5MU PSU AMP; 2.90A
{Escherichia coli} SCOP: c.51.1.1 d.15.10.1 d.67.1.1
d.104.1.1
Length = 642
Score = 44.8 bits (107), Expect = 1e-04
Identities = 24/113 (21%), Positives = 40/113 (35%), Gaps = 25/113 (22%)
Query: 678 DFSHGKPVDPEHLRRIESIVNEQIKAELDVFSKEATLAEAKCINGLRAVF---GEVYPDP 734
D + + E + +E ++E + DV K+ + EA R F GE Y
Sbjct: 105 DVDLDRTLTQEDVEALEKRMHELAEKNYDVIKKKVSWHEA------RETFANRGESY--- 155
Query: 735 VRVVAIGRKVEDLLADPENKEWLSISAE-----LCGGTHLSNTREAEAFALLS 782
KV L + + + + +C G H+ N R F L+
Sbjct: 156 --------KVSILDENIAHDDKPGLYFHEEYVDMCRGPHVPNMRFCHHFKLMK 200
>1tke_A Threonyl-tRNA synthetase; ligase; 1.46A {Escherichia coli} SCOP:
d.15.10.1 d.67.1.1 PDB: 1tje_A 1tkg_A* 1tky_A*
Length = 224
Score = 40.5 bits (96), Expect = 0.001
Identities = 24/113 (21%), Positives = 40/113 (35%), Gaps = 25/113 (22%)
Query: 678 DFSHGKPVDPEHLRRIESIVNEQIKAELDVFSKEATLAEAKCINGLRAVF---GEVYPDP 734
D + + E + +E ++E + DV K+ + EA R F GE Y
Sbjct: 105 DVDLDRTLTQEDVEALEKRMHELAEKNYDVIKKKVSWHEA------RETFANRGESY--- 155
Query: 735 VRVVAIGRKVEDLLADPENKEWLSISAE-----LCGGTHLSNTREAEAFALLS 782
KV L + + + + +C G H+ N R F L+
Sbjct: 156 --------KVSILDENIAHDDKPGLYFHEEYVDMCRGPHVPNMRFCHHFKLMK 200
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain,
aminoacyl-tRNA synthetase, ATP-binding, cytoplasm,
ligase, nucleotide-binding; 3.20A {Archaeoglobus
fulgidus}
Length = 171
Score = 36.5 bits (85), Expect = 0.015
Identities = 15/122 (12%), Positives = 39/122 (31%), Gaps = 16/122 (13%)
Query: 824 SLLEKTVASLKSKVDGAAIPAPKKADIRAKIALLQNQVRKAQKKVAEENLQKAVKVATET 883
LL + + L+ + + + + + +K++ A A
Sbjct: 14 RLLREASSILRVEPA----------KLPKTVERFFEEWKDQRKEIERLKSVIADLWADIL 63
Query: 884 AEAAAS-NGKPFCISRVEVGLDAAAVREAVLKVIEQKGMPVMVFSTDETTNKAVVCAGVP 942
E A + V+ D A+++ ++ E+ + ++ + K V
Sbjct: 64 MERAEEFDSMKVVAEVVDA--DMQALQKLAERLAEKGAVGCLMAKGEG---KVFVVTFSG 118
Query: 943 EK 944
+K
Sbjct: 119 QK 120
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 33.8 bits (76), Expect = 0.12
Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 14/43 (32%)
Query: 812 EKEVDDASKIEGSLLEKTVASLKSKVDGAAIPAPKKADIRAKI 854
EK+ K++ ASLK D +A PA A I+A +
Sbjct: 18 EKQ--ALKKLQ--------ASLKLYADDSA-PA--LA-IKATM 46
Score = 30.7 bits (68), Expect = 1.1
Identities = 8/31 (25%), Positives = 15/31 (48%), Gaps = 2/31 (6%)
Query: 716 EAKCINGLRAVFGEVY-PDPVRVVAIGRKVE 745
E + + L+A ++Y D +AI +E
Sbjct: 18 EKQALKKLQASL-KLYADDSAPALAIKATME 47
>2odr_C Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class
II, ligase; 3.23A {Methanococcus maripaludis}
Length = 701
Score = 34.2 bits (78), Expect = 0.29
Identities = 22/89 (24%), Positives = 31/89 (34%), Gaps = 13/89 (14%)
Query: 776 EAFALLSEEGIAKGIRRITAVTTGLAYKAFEAACSLEKEVDDASKIEGSL---------- 825
+ EG+A GIR I A+ + K EA S E I SL
Sbjct: 470 DFLEKGKSEGVATGIRYIDALCFKITSKLEEAFVSNTTEFKVKVPIVRSLSDINLKIDDI 529
Query: 826 LEKTVASLKSKVDGAAIPAPKKADIRAKI 854
K + S +D + P ++ KI
Sbjct: 530 ALKQIMSKNKVID---VRGPVFLNVEVKI 555
>2odr_D Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class
II, ligase; 3.23A {Methanococcus maripaludis}
Length = 685
Score = 33.4 bits (76), Expect = 0.40
Identities = 22/89 (24%), Positives = 31/89 (34%), Gaps = 13/89 (14%)
Query: 776 EAFALLSEEGIAKGIRRITAVTTGLAYKAFEAACSLEKEVDDASKIEGSL---------- 825
+ EG+A GIR I A+ + K EA S E I SL
Sbjct: 470 DFLEKGKSEGVATGIRYIDALCFKITSKLEEAFVSNTTEFKVKVPIVRSLSDINLKIDDI 529
Query: 826 LEKTVASLKSKVDGAAIPAPKKADIRAKI 854
K + S +D + P ++ KI
Sbjct: 530 ALKQIMSKNKVID---VRGPVFLNVEVKI 555
>2odr_A Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class
II, ligase; 3.23A {Methanococcus maripaludis}
Length = 665
Score = 33.4 bits (76), Expect = 0.46
Identities = 24/119 (20%), Positives = 39/119 (32%), Gaps = 26/119 (21%)
Query: 746 DLLADPENKEWLSISAELCGGTHLSNTREAEAFALLSEEGIAKGIRRITAVTTGLAYKAF 805
+++ PE+ + + + EG+A GIR I A+ + K
Sbjct: 453 NVIGIPESFDGV-------------KEEFKDFLEKGKSEGVATGIRYIDALCFKITSKLE 499
Query: 806 EAACSLEKEVDDASKIEGSL----------LEKTVASLKSKVDGAAIPAPKKADIRAKI 854
EA S E I SL K + S +D + P ++ KI
Sbjct: 500 EAFVSNTTEFKVKVPIVRSLSDINLKIDDIALKQIMSKNKVID---VRGPVFLNVEVKI 555
>2du3_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase/RNA
complex; HET: SEP; 2.60A {Archaeoglobus fulgidus} PDB:
2du4_A 2du5_A* 2du6_A*
Length = 534
Score = 33.3 bits (76), Expect = 0.50
Identities = 32/148 (21%), Positives = 56/148 (37%), Gaps = 34/148 (22%)
Query: 732 PDPVRVVAI-----GRKVEDLLADPENKEWLSISAELCGGTHLSNTR----------EAE 776
P P +A GR V + + E + +LCG + + + +
Sbjct: 395 PSPCSFLAFEGEMMGRNVRVYVVEEEE------NTKLCGPAYANEVVVYKGDIYGIPKTK 448
Query: 777 AFALLSEEGIAKGIRRITAVTTGLAYKAFEAACSLEKEVDDASKIEGSL----------L 826
+ EEG+ GIR I A K EAA ++EV ++I +L +
Sbjct: 449 KWRSFFEEGVPTGIRYIDGFAYYAARKVEEAAMREQEEVKVKARIVENLSDINLYIHENV 508
Query: 827 EKTVASLKSKVDGAAIPAPKKADIRAKI 854
+ + K K+D + P ++A+I
Sbjct: 509 RRYILWKKGKID---VRGPLFVTVKAEI 533
>1im3_D Cytomegalovirus protein US2; beta sheet, beta sandwhich,
immunoglobulin (IG) fold, immunoglobulin (IG)-like
domain, protein complex; 2.20A {Human herpesvirus 5}
SCOP: b.1.18.5
Length = 95
Score = 30.9 bits (69), Expect = 0.55
Identities = 13/55 (23%), Positives = 19/55 (34%), Gaps = 1/55 (1%)
Query: 581 QGGQIFDEGFIEGLFGSFYVRNVQIYGGFVIHIGSLTEGAGRFSVGEEVICKVDY 635
G++F G I G F YGG ++ + F GE + V
Sbjct: 13 DNGKLFARGSIVGNMSRFVFDPKADYGGVGENLYVHADDV-EFVPGESLKWNVRN 66
>2k52_A Uncharacterized protein MJ1198; metal-binding, zinc, zinc-finger,
structural genomics, PSI-2, protein structure
initiative; NMR {Methanocaldococcus jannaschii}
Length = 80
Score = 29.9 bits (68), Expect = 0.75
Identities = 12/61 (19%), Positives = 25/61 (40%), Gaps = 16/61 (26%)
Query: 596 GSFY---VRNVQIYGGFV---------IHIGSLTEG-AGRFSVGEEVICKV---DYDRRK 639
G FY V ++ YG F+ + + +VG+E+I + ++R+
Sbjct: 6 GKFYKGVVTRIEKYGAFINLNEQVRGLLRPRDMISLRLENLNVGDEIIVQAIDVRPEKRE 65
Query: 640 L 640
+
Sbjct: 66 I 66
>2odr_B Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class
II, ligase; 3.23A {Methanococcus maripaludis}
Length = 648
Score = 32.3 bits (73), Expect = 0.85
Identities = 22/89 (24%), Positives = 31/89 (34%), Gaps = 13/89 (14%)
Query: 776 EAFALLSEEGIAKGIRRITAVTTGLAYKAFEAACSLEKEVDDASKIEGSL---------- 825
+ EG+A GIR I A+ + K EA S E I SL
Sbjct: 470 DFLEKGKSEGVATGIRYIDALCFKITSKLEEAFVSNTTEFKVKVPIVRSLSDINLKIDDI 529
Query: 826 LEKTVASLKSKVDGAAIPAPKKADIRAKI 854
K + S +D + P ++ KI
Sbjct: 530 ALKQIMSKNKVID---VRGPVFLNVEVKI 555
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 31.7 bits (71), Expect = 0.90
Identities = 17/95 (17%), Positives = 28/95 (29%), Gaps = 34/95 (35%)
Query: 686 DPEHLR--RIESIVNEQIKAELDVFSKEATLAEAKCINGLRAVFGEVYPDPVRVVAIGRK 743
+PE +R R E +++ ELD A R
Sbjct: 83 EPESIRKWREEQ--RKRL-QELDA-------ASKVMEQEWREK----------------- 115
Query: 744 VEDLLADPENKEWLSISAELCGGTHLSNTREAEAF 778
A + +EW +E ++N +AF
Sbjct: 116 -----AKKDLEEWNQRQSEQVEKNKINNRIADKAF 145
>2yu3_A DNA-directed RNA polymerase III 39 kDa polypeptide F variant;
winged helix domain, RNA polymerase III C39 subunit,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 95
Score = 29.8 bits (67), Expect = 1.1
Identities = 24/96 (25%), Positives = 38/96 (39%), Gaps = 16/96 (16%)
Query: 786 IAKGIRRITAVTTGLAYKAFEAACSLEKEVDDASKIEG-SLLEKTVASL--KSKVDGAAI 842
+ G + TGL Y+ K+ +A K++G EK V + + G
Sbjct: 5 SSGGQLDLLRSNTGLLYRI--------KDSQNAGKMKGSDNQEKLVYQIIEDAGNKGIWS 56
Query: 843 PAPKKADIRAKIALLQNQVRKAQKKVAEENLQKAVK 878
D+R K L ++ K K + + L KAVK
Sbjct: 57 -----RDVRYKSNLPLTEINKILKNLESKKLIKAVK 87
>2du7_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase, structural
genomics, NPPSFA; 3.60A {Methanocaldococcus jannaschii}
Length = 549
Score = 31.9 bits (72), Expect = 1.3
Identities = 21/119 (17%), Positives = 33/119 (27%), Gaps = 26/119 (21%)
Query: 746 DLLADPENKEWLSISAELCGGTHLSNTREAEAFALLSEEGIAKGIRRITAVTTGLAYKAF 805
++ P E + EEG++ IR I + L K
Sbjct: 446 NIYGIPPTFEG-------------VKEQYIPILKKAKEEGVSTNIRYIDGIIYKLVAKIE 492
Query: 806 EAACSLEKEVDDASKIEGSL----------LEKTVASLKSKVDGAAIPAPKKADIRAKI 854
EA S E I SL K + +D + P + + +I
Sbjct: 493 EALVSNVDEFKFRVPIVRSLSDINLKIDELALKQIMGENKVID---VRGPVFLNAKVEI 548
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic
hypermutat protein-DNA complex, DNA mispair, cancer;
HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B*
2o8e_B* 2o8f_B*
Length = 1022
Score = 31.2 bits (71), Expect = 2.1
Identities = 22/108 (20%), Positives = 41/108 (37%), Gaps = 13/108 (12%)
Query: 412 VFPELKQREAHIREIIAAEEASFGKTLLKGIEKFKKAAQDVQGKVLSGQDAFILWDTYGF 471
++ E + I + ++A E K + K I ++ A + K+L + + G
Sbjct: 506 MYEETTYSKKKIIDFLSALEGF--KVMCKIIGIMEEVADGFKSKILKQVISLQTKNPEGR 563
Query: 472 PLDLTQL-----------MAEERGLLVDIEGFNNAMDEARERSRSAQN 508
DLT A + GL+ GF++ D+A R +
Sbjct: 564 FPDLTVELNRWDTAFDHEKARKTGLITPKAGFDSDYDQALADIRENEQ 611
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A
{Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20
c.37.1.20
Length = 854
Score = 29.8 bits (68), Expect = 5.3
Identities = 16/99 (16%), Positives = 38/99 (38%), Gaps = 22/99 (22%)
Query: 810 SLEKEVDDASKIEGSLLEKTVASLKSKVDG---------AAIPAPKKADIRAKIALLQNQ 860
+L+KE D S+ +E +A L ++ + K + + ++ ++ +
Sbjct: 419 ALKKEKDPDSQERLKAIEAEIAKLTEEIAKLRAEWEREREIL--RKLREAQHRLDEVRRE 476
Query: 861 VRKAQK-----KVAE------ENLQKAVKVATETAEAAA 888
+ A++ + AE L+ V+ +E A
Sbjct: 477 IELAERQYDLNRAAELRYGELPKLEAEVEALSEKLRGAR 515
>3fd5_A Selenide, water dikinase 1; selenophosphate synthetase, SELD,
ATP-binding, nucleotide-binding, selenium, transferase;
HET: AP2; 1.90A {Homo sapiens} PDB: 3fd6_A*
Length = 394
Score = 29.5 bits (66), Expect = 5.4
Identities = 13/63 (20%), Positives = 25/63 (39%), Gaps = 7/63 (11%)
Query: 867 KVAEENLQKAVKVATETAEAAASNGKPFCISRVEVGLDAAAVREAVLKVIEQKGMPVMVF 926
KV ++ LQK ++ E + R+ +G+D + + G +V
Sbjct: 34 KVPQDVLQKLLESLQENHFQEDEQFLGAVMPRLGIGMDTCVIP-------LRHGGLSLVQ 86
Query: 927 STD 929
+TD
Sbjct: 87 TTD 89
>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1;
mixed alpha beta fold, structural genomics, PSI; HET:
SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP:
c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*
Length = 287
Score = 29.1 bits (66), Expect = 7.2
Identities = 10/42 (23%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Query: 839 GAAIPAPKKADIRAK-IALLQNQVRKAQKKVAEENLQKAVKV 879
+ A +K D+ + L +NQ Q+ VA ++ +V
Sbjct: 77 ATMMRAVEKYDVNVVGLTLSKNQANHVQQLVANSENLRSKRV 118
>3ivz_A Nitrilase; alpha-beta sandwich, hydrolase; 1.57A {Pyrococcus
abyssi} PDB: 3iw3_A 3ki8_A 3klc_A 1j31_A
Length = 262
Score = 28.7 bits (65), Expect = 8.7
Identities = 8/39 (20%), Positives = 17/39 (43%), Gaps = 7/39 (17%)
Query: 853 KIALLQNQVRKAQKKVAEENLQKAVKVATETAEAAASNG 891
K+A +Q + + ++N KA + + A+ G
Sbjct: 3 KVAYVQMNPQILEP---DKNYSKAE----KLIKEASKQG 34
>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand
complex, cytoplasm, lipid synthesis, methyltransferase;
HET: D22; 2.39A {Mycobacterium tuberculosis} PDB:
1kpi_A*
Length = 302
Score = 28.7 bits (65), Expect = 8.9
Identities = 7/42 (16%), Positives = 15/42 (35%), Gaps = 1/42 (2%)
Query: 839 GAAIPAPKKADIRAK-IALLQNQVRKAQKKVAEENLQKAVKV 879
A + D+ + L +NQ + E + + +V
Sbjct: 85 STMRHAVAEYDVNVIGLTLSENQYAHDKAMFDEVDSPRRKEV 126
>3kd4_A Putative protease; structural genomics, joint center for STR
genomics, JCSG, protein structure initiative, PSI-2,
hydrol; HET: MSE; 2.00A {Parabacteroides distasonis atcc
8503}
Length = 506
Score = 29.1 bits (64), Expect = 9.3
Identities = 12/127 (9%), Positives = 34/127 (26%), Gaps = 12/127 (9%)
Query: 241 EIHYDRTGNRDAASLVNNDDPT--CIEIWNIVFIQFNRESDGSLKPLPAKHVDTGLGFER 298
+ G+ A ++D + NI + + P T +
Sbjct: 154 PLACGLYGSPVKAVEESHDGIKEVHWTLRNIPASSREAFQPKNREASPHLVASTYPSGKA 213
Query: 299 LTSILQNKMSNYDTDVFMPIFDAIQQATGARPYSGKVGADDADKVDMAYRVVADHIRTLS 358
+ L ++ + ++ +KV++ + +++ T
Sbjct: 214 ALATLDKRLKESQGYESKTFAQFLTDK----------SGNEQEKVNIIRDHILNNLSTCP 263
Query: 359 FAIADGS 365
+A
Sbjct: 264 IPMAMTG 270
>1qme_A Penicillin-binding protein 2X; peptidoglycan synthesis, resistance,
cell WALL, transmembrane; 2.4A {Streptococcus
pneumoniae} SCOP: d.11.1.1 d.11.1.1 d.175.1.1 e.3.1.1
PDB: 1qmf_A* 1pyy_A* 1rp5_A 1pmd_A 1k25_A 2zc3_B*
2z2l_B* 2z2m_B* 2zc4_B* 2zc3_A* 2z2l_A* 2z2m_A* 2zc4_A*
2zc3_C* 2z2l_C* 2z2m_C* 2zc4_C*
Length = 702
Score = 28.9 bits (65), Expect = 9.4
Identities = 16/94 (17%), Positives = 30/94 (31%), Gaps = 22/94 (23%)
Query: 431 EASFGKTLLKGIEKFKKAAQDVQGKVLSGQDAFILWDTYGFPLDLT-----QLMAEERGL 485
E+S +L G + +D G ++ G + G + T Q E
Sbjct: 172 ESSLNS-ILAGTDGIITYEKDRLGNIVPGTEQVSQRTMDGKDVYTTISSPLQSFMET--- 227
Query: 486 LVDIEGFNNAMDEARERSRSAQNKQAGGAIVMDA 519
MD +E+ + + A ++ A
Sbjct: 228 ---------QMDAFQEKVKG----KYMTATLVSA 248
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.135 0.398
Gapped
Lambda K H
0.267 0.0874 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 15,827,866
Number of extensions: 1025756
Number of successful extensions: 2774
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2702
Number of HSP's successfully gapped: 74
Length of query: 1009
Length of database: 6,701,793
Length adjustment: 103
Effective length of query: 906
Effective length of database: 3,825,930
Effective search space: 3466292580
Effective search space used: 3466292580
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (27.4 bits)