BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 001827
         (1009 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3V47|C Chain C, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
           Tlr5 In Complex With Salmonella Flagellin
 pdb|3V47|D Chain D, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
           Tlr5 In Complex With Salmonella Flagellin
          Length = 425

 Score = 37.7 bits (86), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 2/55 (3%)

Query: 533 VHLDVQRVAIRCLGLFGLLENKPSEELVKQLRLSF--VKGCPTVSIMAGKALIDL 585
           + +D+Q++ ++ LGL G   N P E  V  L+ SF  V G  T +  A K  +D+
Sbjct: 115 ITIDLQKIDVKSLGLDGFNVNGPKEATVGDLKSSFKNVTGYDTYAAGADKYRVDI 169


>pdb|3M93|A Chain A, Complex Crystal Structure Of Ascaris Suum Eif4e-3 With M7g
           Cap
 pdb|3M94|A Chain A, Complex Crystal Structure Of Ascaris Suum Eif4e-3 With
           M2,2,7g Cap
          Length = 189

 Score = 33.5 bits (75), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 25/88 (28%), Positives = 42/88 (47%), Gaps = 11/88 (12%)

Query: 693 SNESKDLQRLKQCLSIF--FEHYASLSANHKRCLSKA--------FVPALRSMWPGINGN 742
           ++ SKD +   + +++F   E + SL  NH +  S          F   ++ MW   N  
Sbjct: 16  ADRSKDWEDCLKQVAVFDTVEDFWSL-YNHIQAASGLTWGSDYYLFKEGIKPMWEDENNV 74

Query: 743 AGGSSLVVSNKRKRAVQASKFLLQMMQA 770
            GG  LVV +K+KRA     + L+++ A
Sbjct: 75  KGGRWLVVVDKQKRAQLLDHYWLELLMA 102


>pdb|1GA2|A Chain A, The Crystal Structure Of Endoglucanase 9g From Clostridium
           Cellulolyticum Complexed With Cellobiose
 pdb|1GA2|B Chain B, The Crystal Structure Of Endoglucanase 9g From Clostridium
           Cellulolyticum Complexed With Cellobiose
 pdb|1G87|A Chain A, The Crystal Structure Of Endoglucanase 9g From Clostridium
           Cellulolyticum
 pdb|1G87|B Chain B, The Crystal Structure Of Endoglucanase 9g From Clostridium
           Cellulolyticum
 pdb|1KFG|A Chain A, The X-Ray Crystal Structure Of Cel9g From Clostridium
           Cellulolyticum Complexed With A Thio-Oligosaccharide
           Inhibitor
 pdb|1KFG|B Chain B, The X-Ray Crystal Structure Of Cel9g From Clostridium
           Cellulolyticum Complexed With A Thio-Oligosaccharide
           Inhibitor
          Length = 614

 Score = 30.4 bits (67), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 2/55 (3%)

Query: 387 RFASRQLLLLGEMLDFSDATIRKVASAFVQDLLHRPLDYEVDDDGNKVVIGDGIN 441
           R A+ Q  L G   ++   T  KV+    +D L   +DY +   G   V+G G+N
Sbjct: 315 RHATTQAFLAGVYAEWEGCTPSKVS--VYKDFLKSQIDYALGSTGRSFVVGYGVN 367


>pdb|1K72|A Chain A, The X-ray Crystal Structure Of Cel9g Complexed With
           Cellotriose
 pdb|1K72|B Chain B, The X-ray Crystal Structure Of Cel9g Complexed With
           Cellotriose
          Length = 614

 Score = 30.4 bits (67), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 2/55 (3%)

Query: 387 RFASRQLLLLGEMLDFSDATIRKVASAFVQDLLHRPLDYEVDDDGNKVVIGDGIN 441
           R A+ Q  L G   ++   T  KV+    +D L   +DY +   G   V+G G+N
Sbjct: 315 RHATTQAFLAGVYAEWEGCTPSKVS--VYKDFLKSQIDYALGSTGRSFVVGYGVN 367


>pdb|2XD7|A Chain A, Crystal Structure Of The Macro Domain Of Human Core
           Histone H2a
 pdb|2XD7|B Chain B, Crystal Structure Of The Macro Domain Of Human Core
           Histone H2a
 pdb|2XD7|C Chain C, Crystal Structure Of The Macro Domain Of Human Core
           Histone H2a
 pdb|2XD7|D Chain D, Crystal Structure Of The Macro Domain Of Human Core
           Histone H2a
          Length = 193

 Score = 30.0 bits (66), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 20/75 (26%), Positives = 36/75 (48%), Gaps = 4/75 (5%)

Query: 383 GANYRFASRQLLLLGEMLDFSDATIRKVASAFVQDLLHRPLDYEVDDDGNKVVIGDGINL 442
           G  +   S + L+LG+ L  + + I  + S  V+ ++H P   E+D    K  IG  +  
Sbjct: 4   GDGFTILSSKSLVLGQKLSLTQSDISHIGSMRVEGIVH-PTTAEID---LKEDIGKALEK 59

Query: 443 GGDKDWADAVSRLAR 457
            G K++ + V  L +
Sbjct: 60  AGGKEFLETVKELRK 74


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.318    0.131    0.368 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,091,382
Number of Sequences: 62578
Number of extensions: 903197
Number of successful extensions: 2389
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 2387
Number of HSP's gapped (non-prelim): 10
length of query: 1009
length of database: 14,973,337
effective HSP length: 108
effective length of query: 901
effective length of database: 8,214,913
effective search space: 7401636613
effective search space used: 7401636613
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)