BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 001827
(1009 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9YHB5|CND3_XENLA Condensin complex subunit 3 OS=Xenopus laevis GN=ncapg PE=1 SV=1
Length = 1034
Score = 187 bits (475), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 202/826 (24%), Positives = 362/826 (43%), Gaps = 113/826 (13%)
Query: 4 IAKILDESRTSYATHNRKLKDLRAVRSKSPSTAQFSSAFFKTLTPLFTVQRRTASAERVV 63
I + D S+ ++ H + + LRA +K+ + F F L V RR + ERV+
Sbjct: 10 IKEAFDLSQKAHQNHAKLVSSLRAAYNKTEDKSIFLEEFIHFLKFPLIVYRREPAVERVM 69
Query: 64 RFVSAFAATNNDEF-------------LEDFLKFLLVAAMAANKTARFRACQIISEIIMR 110
FV+ F + ++ + FLL + A++ RFR CQ+I+++++
Sbjct: 70 DFVAKFVTSFHNSGGENEEEADEENSPVNCLFNFLLQSHGASSMAVRFRVCQLINKLLVN 129
Query: 111 LPDDTEVSDEVWDEVIECMKVKVGDKVSVIRTFAVRSLSRFVNDSD-NSDILDLLLEVLP 169
LP++ ++ D+++D++ + M +++ D+V +R AV +L+R + SD + + + + +L
Sbjct: 130 LPENAQIDDDLFDKIHDAMLIRLKDRVPNVRIQAVLALARLQDPSDPDCPVSNAYVHLLE 189
Query: 170 LEQNADVRKTIVLSLPPSNATSQAIIDCTLDVSESVRKAAYCVLANKFPLQSLSIKHRTM 229
+ N +VR+ ++ + PS + I+ T+DV E VRK AY VL+ K +++L+I R
Sbjct: 190 NDSNPEVRRAVLTCIAPSAKSLPKIVGRTMDVKEPVRKLAYQVLSEKVHIRALTIAQRVK 249
Query: 230 ILKRGLADRSEAVSKECLKLMKDHWLAKHCNGNPIELLKYLDVETYELVGESVMAALLKE 289
+L++GL DRS AV K + WL ++ G+ ++LL LDVE V S + AL
Sbjct: 250 LLQQGLNDRSAAVKDVIQKKLIQAWL-QYSEGDVLDLLHRLDVENSPEVSLSALNALFSV 308
Query: 290 EYISSADVETEGDSSHCTQRIQLMEAEVALYWKTACRHLQMEAEAKGSDAAATMGTEAAV 349
+ + ++ + E LYW+ C HL+ + + +G A + E AV
Sbjct: 309 SPVGELVQNCKNLDERKLIPVETLTPENVLYWRALCEHLKSKGD-EGEAALENILPEPAV 367
Query: 350 YAAEASDTNDLLERILPATVSDY-VDLVKTHIDAGANYRFASRQLLLLGEMLDFSDATIR 408
YA S + LP D D+ T I+ F +QL+L LD S+ R
Sbjct: 368 YARYLSS----YLQTLPVLSEDQRADM--TKIEDLMTKEFIGQQLILTIGCLDTSEEGGR 421
Query: 409 KVASAFVQDLL---HRP----------LDYEVDDDGNKV-----VIGD----GINLGGDK 446
K A +Q++L + P L + + DD ++ +I + + + K
Sbjct: 422 KRLLAVLQEILVMQNTPTSLISSLAELLLFVLKDDDKRIQTVAEIISELREPIVTVDNPK 481
Query: 447 D----------WADAVSRL------------------ARKVHAATGEFEEIMTGAVKELA 478
D AD +L A ++ E E + T +KE
Sbjct: 482 DAAQSRKLQLKLADVKVQLIEAKQALEDSLTNEDYSRASELKEKVKELESLKTQLIKEAE 541
Query: 479 LP----CRERTADFIQWMHSLAVTGLLLENAKSFHLIQGKPAESAELLHSLLLPGAKHVH 534
P R D + L + LL K L +G E+ SL+LPG +VH
Sbjct: 542 EPEMKEIRVEKNDPETLLKCLIMCNELL---KHLSLSKGLGGTLNEICESLILPGITNVH 598
Query: 535 LDVQRVAIRCLGLFGLLENKPSEELVKQLRLSFVKGCPTVSIMAGKALIDLGMWHG---- 590
V+ +A+ C+G L + + + L V A A+ D+ + G
Sbjct: 599 PSVRNMAVLCIGCCALQNKDFARQHLPLLLQILQLDEVKVKNSALNAVFDMLLLFGMDIL 658
Query: 591 ---PQEVDKAM------GQKDISFQPRNDKMTSSPINLSETDGDLNVELLDLLYAGIVAS 641
P D + +DIS Q + + + N + V + L++G + S
Sbjct: 659 KSKPTNPDDSQCKAQENADEDISEQEKPGSVDENLTNEEVQEETATVNGILHLFSGFLDS 718
Query: 642 DRGKYSGDENESIEAVIGEGFAKVLLLSEKYPSIPASLHSLLLAKLINLYFSNESKDLQR 701
+ + I EG K L+ S + + + LL++LI L+++ +++ +
Sbjct: 719 EIAE--------IRTETAEGLVK-LMFSGRL------ISAKLLSRLILLWYNPVTEEDTK 763
Query: 702 LKQCLSIFFEHYASLSANHKRCLSKAFVPALRSMWPGINGNAGGSS 747
L+ CL +FF +A +++ C ++AF+P L++++ NA SS
Sbjct: 764 LRHCLGVFFPIFAYSCRSNQECFAEAFLPTLQTLF-----NAPASS 804
>sp|Q9BPX3|CND3_HUMAN Condensin complex subunit 3 OS=Homo sapiens GN=NCAPG PE=1 SV=1
Length = 1015
Score = 184 bits (467), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 194/794 (24%), Positives = 353/794 (44%), Gaps = 110/794 (13%)
Query: 26 RAVRSKSPSTAQFSSAFFKTLTPLFTVQRRTASAERVVRFVSAFAATNNDE--------- 76
R R+ T F F L + V +R + ERV+ F + F + +
Sbjct: 33 RTYRTMDDKTV-FHEEFIHYLKYVMVVYKREPAVERVIEFAAKFVTSFHQSDMEDDEEEE 91
Query: 77 ---FLEDFLKFLLVAAMAANKTARFRACQIISEIIMRLPDDTEVSDEVWDEVIECMKVKV 133
L FLL + A + RFR C +I++++ +P++ ++ D+V+D++ + M +++
Sbjct: 92 DGGLLNYLFTFLLKSHEANSNAVRFRVCLLINKLLGSMPENAQIDDDVFDKINKAMLIRL 151
Query: 134 GDKVSVIRTFAVRSLSRFVNDSDN-SDILDLLLEVLPLEQNADVRKTIVLSLPPSNATSQ 192
DK+ +R AV +LSR + D+ +++ ++ + N +VR+ ++ + PS T
Sbjct: 152 KDKIPNVRIQAVLALSRLQDPKDDECPVVNAYATLIENDSNPEVRRAVLSCIAPSAKTLP 211
Query: 193 AIIDCTLDVSESVRKAAYCVLANKFPLQSLSIKHRTMILKRGLADRSEAVSKECLKLMKD 252
I+ T DV E+VRK AY VLA K ++++SI R M+L++GL DRS+AV + K +
Sbjct: 212 KIVGRTKDVKEAVRKLAYQVLAEKVHMRAMSIAQRVMLLQQGLNDRSDAVKQAMQKHLLQ 271
Query: 253 HWLAKHCNGNPIELLKYLDVETYELVGESVMAALLKEEYISSADVETEGDSSHCTQRIQL 312
WL + GN +ELL LDVE V SV+ AL +S + + ++
Sbjct: 272 GWL-RFSEGNILELLHRLDVENSSEVAVSVLNALFSITPLSELVGLCKNNDGRKLIPVET 330
Query: 313 MEAEVALYWKTACRHLQMEAEAKGSDAAATMGTEAAVYAAEASDTNDLLERI--LPATVS 370
+ E+ALYW C +L+ + + +G + + E VYA + LL I +P
Sbjct: 331 LTPEIALYWCALCEYLKSKGD-EGEEFLEQILPEPVVYA------DYLLSYIQSIPVVNE 383
Query: 371 DYV-DLVKTHIDAGANYRFASRQLLLLGEMLDFSDATIRKVASAFVQDLLHRP------- 422
++ D ++I F +QL+L+ + LD S+ RK A +Q++L P
Sbjct: 384 EHRGDF--SYIGNLMTKEFIGQQLILIIKSLDTSEEGGRKKLLAVLQEILILPTIPISLV 441
Query: 423 -------LDYEVDDDGNKVVIGDGIN--------LGGDKDWADA------VSRLARKVHA 461
L +DD+ ++ + I+ +G + D AD ++ + K+
Sbjct: 442 SFLVERLLHIIIDDNKRTQIVTEIISEIRAPIVTVGVNNDPADVRKKELKMAEIKVKLIE 501
Query: 462 ATGEFEEIMT-------GAVKELALPCRERTADFIQWMHSLAVTGLLLEN---------- 504
A E +T +KE + + ++ L + + +E
Sbjct: 502 AKEALENCITLQDFNRASELKEEIKALEDARINLLKETEQLEIKEVHIEKNDAETLQKCL 561
Query: 505 ------AKSFHLIQGKPAESAELLHSLLLPGAKHVHLDVQRVAIRCLGLFGLLENKPSEE 558
K + G A ++ SL+LPG +H V+ +A+ CLG GL + +
Sbjct: 562 ILCYELLKQMSISTGLSATMNGIIESLILPGIISIHPVVRNLAVLCLGCCGLQNQDFARK 621
Query: 559 ----LVKQLRLSFVKGCPTVSIMAGKALIDLGMWHGPQEVDKAMGQKDISFQPRNDK-MT 613
L++ L++ V T+ I A KA+ D M G + F+ + K +
Sbjct: 622 HFVLLLQVLQIDDV----TIKISALKAIFDQLMTFGIE-----------PFKTKKIKTLH 666
Query: 614 SSPINLSETDGDLNVELLDLLYAGIVASDRGKYSGDENESIEAVIGEGFAKVLLLSEKYP 673
++ D + E+ + A V + E + EG AK++ +
Sbjct: 667 CEGTEINSDDEQESKEVEETATAKNVLKLLSDFLDSEVSELRTGAAEGLAKLM-----FS 721
Query: 674 SIPASLHSLLLAKLINLYFSNESKDLQRLKQCLSIFFEHYASLSANHKRCLSKAFVPALR 733
+ S S +L++LI L+++ +++ +L+ CL +FF +A S ++ C +AF+P L+
Sbjct: 722 GLLVS--SRILSRLILLWYNPVTEEDVQLRHCLGVFFPVFAYASRTNQECFEEAFLPTLQ 779
Query: 734 SMWPGINGNAGGSS 747
++ NA SS
Sbjct: 780 TL-----ANAPASS 788
>sp|Q10429|CND3_SCHPO Condensin complex subunit 3 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=cnd3 PE=1 SV=1
Length = 875
Score = 113 bits (283), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 77/258 (29%), Positives = 142/258 (55%), Gaps = 15/258 (5%)
Query: 6 KILDESRTSYATHNRKLKDLRAVRSKSPSTAQFSSAFFKTLTPLFTVQRRTASAERVVRF 65
+I+ S+TS A H + L +R++ F + + L + TV++ ++A+RV+RF
Sbjct: 5 QIISSSQTSIAGHRKLCNKLFTLRTQEG----FETDILRALNIILTVKKGNSNADRVLRF 60
Query: 66 VSAFAATNND-----EFLEDFLKFLLVAAMAANKTARFRACQIISEIIMRLPDDTEVSDE 120
+ F + ++ LK +L A +KT R+R CQII+ ++ + E+ D+
Sbjct: 61 LVTFVNYLQQKDPEIDIVQPILKHILRGLDAKDKTVRYRCCQIIARVVNCV---KEIDDD 117
Query: 121 VWDEVIECMKVKVGDKVSVIRTFAVRSLSRFVNDS--DNSDILDLLLEVLPLEQNADVRK 178
+++ + E + +V D+ S++R AV +LSR D+ + +D+ ++LL +L + +++VR+
Sbjct: 118 LYNTLKEKLLSRVLDRESIVRLEAVVALSRLQEDTGDEENDVRNILLFLLQNDPSSEVRR 177
Query: 179 TIVLSLPPSNATSQAIIDCTLDVSESVRKAAYC-VLANKFPLQSLSIKHRTMILKRGLAD 237
+++L++ SN+T I++ DV + RK Y VL + LSIK R ILK GL D
Sbjct: 178 SVLLNIEVSNSTLPFILERARDVDAANRKCVYARVLPKIGDFRYLSIKKRVRILKWGLND 237
Query: 238 RSEAVSKECLKLMKDHWL 255
R E+V K ++ W+
Sbjct: 238 RDESVEKAAADMLAYQWI 255
>sp|Q06680|CND3_YEAST Condensin complex subunit 3 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=YCG1 PE=1 SV=2
Length = 1035
Score = 78.2 bits (191), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 73/308 (23%), Positives = 148/308 (48%), Gaps = 43/308 (13%)
Query: 4 IAKILDESRTSYATHNRKLKDLRAVRSKSPSTAQ---FSSAFFKTLTPLFTVQRRTASAE 60
+A++ +++ SYA H + + L+ ++SK+ F+ F K +T + +++ +
Sbjct: 17 VAEVFQKAQGSYAGHRKHIAVLKKIQSKAVEQGYEDAFNFWFDKLVTKILPLKKNEIIGD 76
Query: 61 RVVRFVSAFAA----------------TNNDE-----FLEDFLKFLLVAAMAANKTARFR 99
R+V+ V+AF A TN++E F++ F++ +L + +K RFR
Sbjct: 77 RIVKLVAAFIASLERELILAKKQNYKLTNDEEGIFSRFVDQFIRHVLRGVESPDKNVRFR 136
Query: 100 ACQIISEIIMRLPDDTEVSDEVWDEVIECMKVKVGDKVSVIRTFAVRSLSRFVND----- 154
Q+++ I+ + E+ + +++ +I + ++ D+ +R AV L++F ++
Sbjct: 137 VLQLLAVIMDNIG---EIDESLFNLLILSLNKRIYDREPTVRIQAVFCLTKFQDEEQTEH 193
Query: 155 ----SDNSDILDLLLEVLPLEQN---ADVRKTIVLSLPPSNATSQAIIDCTLDVSESVRK 207
SDN + + ++ QN A+VR+ +L+L N T I++ DV+ R+
Sbjct: 194 LTELSDNEENFEATRTLVASIQNDPSAEVRRAAMLNLINDNNTRPYILERARDVNIVNRR 253
Query: 208 AAYCVLANKFPLQSL-SIKHRTM--ILKRGLADRSEAVSKECLKLMKDHWLAKHCNGNPI 264
Y + + I+ +++ GL DR +V C +L+ WL +G+ I
Sbjct: 254 LVYSRILKSMGRKCFDDIEPHIFDQLIEWGLEDRELSVRNACKRLIAHDWL-NALDGDLI 312
Query: 265 ELLKYLDV 272
ELL+ LDV
Sbjct: 313 ELLEKLDV 320
>sp|Q06974|FLIC_SALON Flagellin OS=Salmonella oranienberg GN=fliC PE=3 SV=2
Length = 508
Score = 38.9 bits (89), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
Query: 533 VHLDVQRVAIRCLGLFGLLENKPSEELVKQLRLSF--VKGCPTVSIMAGKALIDL 585
+ +D+Q++ ++ LGL G N P E V L+ SF V G T ++ A K +D+
Sbjct: 156 ITIDLQKIDVKSLGLDGFNVNGPKEATVGDLKSSFKNVTGYDTYAVGANKYRVDV 210
>sp|Q06968|FLIC_SALBE Flagellin OS=Salmonella berta GN=fliC PE=3 SV=2
Length = 508
Score = 38.9 bits (89), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
Query: 533 VHLDVQRVAIRCLGLFGLLENKPSEELVKQLRLSF--VKGCPTVSIMAGKALIDL 585
+ +D+Q++ ++ LGL G N P E V L+ SF V G T ++ A K +D+
Sbjct: 156 ITIDLQKIDVKSLGLDGFNVNGPKEATVGDLKSSFKNVTGYDTYAVGANKYRVDV 210
>sp|A4YXQ9|GCSP_BRASO Glycine dehydrogenase [decarboxylating] OS=Bradyrhizobium sp.
(strain ORS278) GN=gcvP PE=3 SV=1
Length = 957
Score = 37.0 bits (84), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 44/216 (20%), Positives = 92/216 (42%), Gaps = 4/216 (1%)
Query: 672 YPSIPASLHSLLLAKLINLYFSNESKDLQRLKQCLSIFFEHYASLSANHKRCLSKAFVPA 731
Y ++ +L L +++ L S +S+ + L +H A C ++ +
Sbjct: 286 YMAVRDALKRSLPGRIVGL--SVDSRGAPAYRLALQTREQHIRREKATSNICTAQVLLAV 343
Query: 732 LRSMWPGINGNAGGSSLVVSNKRKRAVQASKFLLQMMQAPLYAKETEVEDENGIGNMPET 791
+ +M+ +G AG ++ + R+ AV A+ L ++ AP + N
Sbjct: 344 IAAMYAVYHGPAGLKAIARTVHRRTAVLAAG-LRKLGFAPANDAFFDTVTVEAGANASSI 402
Query: 792 SDVSEQSSLECGEEGLAIRIAVEVLSIHMKKTPAERSFVSALCRILVLIQFRLSEQGAIK 851
+E + G G +RIA++ + A R+F L + + R + +K
Sbjct: 403 IARAEAERINLGHNGSRLRIALDETTTADVVEAAWRAFGGELSYADIEAEARDAVPAELK 462
Query: 852 LMRRLLNH-IFESVSTERDLVKELKRMSDRLTGLDK 886
R L H +F + +E ++++ L++++DR LD+
Sbjct: 463 RQRPYLTHPVFHAHRSETEMLRYLRKLADRDLALDR 498
>sp|A5EMM2|GCSP_BRASB Glycine dehydrogenase [decarboxylating] OS=Bradyrhizobium sp.
(strain BTAi1 / ATCC BAA-1182) GN=gcvP PE=3 SV=1
Length = 957
Score = 37.0 bits (84), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 44/216 (20%), Positives = 92/216 (42%), Gaps = 4/216 (1%)
Query: 672 YPSIPASLHSLLLAKLINLYFSNESKDLQRLKQCLSIFFEHYASLSANHKRCLSKAFVPA 731
Y ++ +L L +++ L S +S+ + L +H A C ++ +
Sbjct: 286 YMAVRDALKRSLPGRIVGL--SVDSRGAPAYRLALQTREQHIRREKATSNICTAQVLLAV 343
Query: 732 LRSMWPGINGNAGGSSLVVSNKRKRAVQASKFLLQMMQAPLYAKETEVEDENGIGNMPET 791
+ +M+ +G G S+ + R+ AV A+ L ++ AP + N E
Sbjct: 344 IAAMYAVYHGPDGLKSIARTVHRRAAVLAAG-LRKLGFAPASDSFFDTVLVEAGANCDEI 402
Query: 792 SDVSEQSSLECGEEGLAIRIAVEVLSIHMKKTPAERSFVSALCRILVLIQFRLSEQGAIK 851
+E + G +G +RIA++ + R+F L + + R + +K
Sbjct: 403 IARAESQRINLGRDGSRLRIALDETTTADVVEAVWRAFGGELSYAAIEAEARDAVPAELK 462
Query: 852 LMRRLLNH-IFESVSTERDLVKELKRMSDRLTGLDK 886
R L H +F + +E ++++ L++++DR LD+
Sbjct: 463 RQRPFLTHPVFHAHRSETEMLRYLRKLADRDLALDR 498
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.131 0.364
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 342,066,657
Number of Sequences: 539616
Number of extensions: 13989545
Number of successful extensions: 61584
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 108
Number of HSP's that attempted gapping in prelim test: 60758
Number of HSP's gapped (non-prelim): 637
length of query: 1009
length of database: 191,569,459
effective HSP length: 128
effective length of query: 881
effective length of database: 122,498,611
effective search space: 107921276291
effective search space used: 107921276291
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 66 (30.0 bits)