Query 001827
Match_columns 1009
No_of_seqs 194 out of 290
Neff 6.3
Searched_HMMs 46136
Date Fri Mar 29 10:15:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001827.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001827hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2025 Chromosome condensatio 100.0 6E-115 1E-119 991.2 49.8 716 2-838 5-792 (892)
2 COG5218 YCG1 Chromosome conden 100.0 1E-102 3E-107 872.9 51.9 788 2-908 11-851 (885)
3 PF12719 Cnd3: Nuclear condens 100.0 4.1E-53 8.8E-58 471.1 27.2 284 492-839 1-286 (298)
4 PRK09687 putative lyase; Provi 98.4 1.1E-05 2.3E-10 90.0 17.4 157 82-250 56-216 (280)
5 PRK09687 putative lyase; Provi 98.3 2.2E-05 4.7E-10 87.6 19.1 188 78-288 21-218 (280)
6 PF01602 Adaptin_N: Adaptin N 98.2 0.007 1.5E-07 72.8 36.5 233 3-251 8-256 (526)
7 PTZ00429 beta-adaptin; Provisi 98.0 0.027 5.9E-07 70.7 37.3 126 81-214 69-204 (746)
8 PRK13800 putative oxidoreducta 97.8 0.00029 6.4E-09 90.5 16.4 173 84-286 718-894 (897)
9 PRK13800 putative oxidoreducta 97.8 0.00051 1.1E-08 88.4 17.8 178 82-289 623-802 (897)
10 PF13646 HEAT_2: HEAT repeats; 97.7 0.00018 3.9E-09 65.1 8.8 85 83-184 2-87 (88)
11 PF13646 HEAT_2: HEAT repeats; 97.5 0.00042 9E-09 62.7 8.5 83 127-214 2-88 (88)
12 KOG1949 Uncharacterized conser 97.4 0.004 8.7E-08 74.6 16.4 175 37-215 129-328 (1005)
13 PF01602 Adaptin_N: Adaptin N 97.4 0.41 8.8E-06 57.7 34.3 221 57-289 94-331 (526)
14 KOG1020 Sister chromatid cohes 97.3 1.3 2.9E-05 58.1 39.7 138 121-261 813-965 (1692)
15 COG1413 FOG: HEAT repeat [Ener 97.2 0.011 2.5E-07 67.1 16.9 183 80-289 43-240 (335)
16 PF12348 CLASP_N: CLASP N term 97.1 0.0049 1.1E-07 66.1 12.9 168 80-272 53-221 (228)
17 PF12717 Cnd1: non-SMC mitotic 97.1 0.0043 9.2E-08 64.7 11.4 127 93-232 1-149 (178)
18 KOG1240 Protein kinase contain 96.9 0.015 3.3E-07 73.5 15.8 211 37-250 418-680 (1431)
19 PF12348 CLASP_N: CLASP N term 96.8 0.0087 1.9E-07 64.2 11.4 174 2-185 6-202 (228)
20 TIGR02270 conserved hypothetic 96.8 0.011 2.5E-07 69.3 12.8 114 126-250 88-202 (410)
21 PTZ00429 beta-adaptin; Provisi 96.7 0.12 2.7E-06 65.0 21.7 101 74-184 99-203 (746)
22 KOG1525 Sister chromatid cohes 96.2 0.031 6.6E-07 73.1 12.7 137 76-215 255-402 (1266)
23 KOG2259 Uncharacterized conser 95.9 0.031 6.7E-07 67.1 9.6 171 83-255 237-475 (823)
24 PF05918 API5: Apoptosis inhib 95.9 0.043 9.4E-07 66.3 10.8 149 59-215 2-159 (556)
25 KOG2025 Chromosome condensatio 95.8 0.33 7.2E-06 59.1 17.5 223 62-296 22-263 (892)
26 COG5096 Vesicle coat complex, 95.8 0.8 1.7E-05 57.3 21.4 155 18-185 33-191 (757)
27 TIGR02270 conserved hypothetic 95.6 0.2 4.4E-06 59.0 14.8 145 126-288 56-204 (410)
28 PF12717 Cnd1: non-SMC mitotic 95.5 0.21 4.5E-06 52.1 13.1 158 571-819 1-159 (178)
29 COG5240 SEC21 Vesicle coat com 95.3 1 2.2E-05 54.0 18.5 180 74-256 297-554 (898)
30 COG5096 Vesicle coat complex, 95.1 0.22 4.8E-06 62.1 13.5 129 78-214 53-191 (757)
31 KOG2011 Sister chromatid cohes 95.1 0.066 1.4E-06 68.2 9.2 128 128-257 291-437 (1048)
32 COG1413 FOG: HEAT repeat [Ener 94.9 0.57 1.2E-05 53.3 15.6 150 81-250 75-237 (335)
33 cd00020 ARM Armadillo/beta-cat 94.8 0.057 1.2E-06 50.8 6.0 98 81-182 8-113 (120)
34 KOG1949 Uncharacterized conser 94.8 9.7 0.00021 47.1 25.1 208 75-289 128-368 (1005)
35 KOG1062 Vesicle coat complex A 94.6 3.7 7.9E-05 51.2 21.5 208 17-262 157-400 (866)
36 PF12755 Vac14_Fab1_bd: Vacuol 94.4 0.1 2.3E-06 49.2 6.5 69 74-145 21-89 (97)
37 KOG1824 TATA-binding protein-i 93.8 27 0.00058 44.8 40.0 182 84-273 9-224 (1233)
38 PF13513 HEAT_EZ: HEAT-like re 93.8 0.056 1.2E-06 44.9 3.0 54 95-151 2-55 (55)
39 KOG1242 Protein containing ada 93.6 0.8 1.7E-05 55.4 13.3 170 76-250 212-396 (569)
40 PF10508 Proteasom_PSMB: Prote 93.4 0.88 1.9E-05 55.3 13.6 148 98-251 56-227 (503)
41 KOG2062 26S proteasome regulat 93.3 0.36 7.9E-06 59.0 9.8 115 131-247 526-645 (929)
42 KOG0414 Chromosome condensatio 93.2 0.96 2.1E-05 58.1 13.6 143 518-714 916-1063(1251)
43 KOG2023 Nuclear transport rece 93.2 0.95 2.1E-05 55.0 12.8 87 125-212 175-279 (885)
44 KOG0166 Karyopherin (importin) 93.0 2.3 4.9E-05 51.2 15.8 156 77-236 234-409 (514)
45 PF13513 HEAT_EZ: HEAT-like re 92.9 0.14 3.1E-06 42.4 4.2 46 138-184 1-52 (55)
46 KOG1059 Vesicle coat complex A 92.6 35 0.00075 42.7 27.3 181 76-270 140-376 (877)
47 cd00020 ARM Armadillo/beta-cat 92.4 0.55 1.2E-05 44.0 8.0 89 125-214 8-116 (120)
48 PF01347 Vitellogenin_N: Lipop 92.2 4.4 9.6E-05 50.2 17.7 168 74-250 429-617 (618)
49 COG5116 RPN2 26S proteasome re 92.1 0.71 1.5E-05 55.0 9.8 117 130-248 522-643 (926)
50 PF10508 Proteasom_PSMB: Prote 92.1 2.5 5.3E-05 51.4 15.0 169 58-235 54-244 (503)
51 KOG1525 Sister chromatid cohes 91.2 1.3 2.8E-05 58.6 11.8 179 75-257 180-406 (1266)
52 KOG2023 Nuclear transport rece 91.1 48 0.001 41.2 27.6 69 78-149 213-281 (885)
53 KOG0414 Chromosome condensatio 91.0 5.9 0.00013 51.4 16.7 124 58-183 291-422 (1251)
54 KOG1020 Sister chromatid cohes 91.0 3.4 7.4E-05 54.6 14.8 132 78-215 814-957 (1692)
55 KOG1824 TATA-binding protein-i 90.9 59 0.0013 41.9 46.4 162 492-714 837-1017(1233)
56 KOG1943 Beta-tubulin folding c 90.5 68 0.0015 41.9 34.1 152 76-256 337-500 (1133)
57 PF05004 IFRD: Interferon-rela 90.2 5.3 0.00011 45.6 14.3 115 36-151 39-158 (309)
58 KOG2213 Apoptosis inhibitor 5/ 89.7 2.4 5.1E-05 49.0 10.8 103 58-168 3-105 (460)
59 smart00638 LPD_N Lipoprotein N 88.9 34 0.00074 42.2 21.2 168 74-249 391-572 (574)
60 KOG1062 Vesicle coat complex A 88.9 50 0.0011 41.8 21.7 208 57-273 145-397 (866)
61 KOG1241 Karyopherin (importin) 88.6 11 0.00024 47.0 15.9 233 5-256 4-285 (859)
62 COG5098 Chromosome condensatio 88.4 3.3 7.1E-05 50.8 11.1 181 82-275 301-496 (1128)
63 smart00638 LPD_N Lipoprotein N 88.3 2.3 5E-05 52.3 10.6 126 77-213 443-573 (574)
64 KOG1242 Protein containing ada 88.3 10 0.00023 46.2 15.4 166 82-251 176-358 (569)
65 KOG2171 Karyopherin (importin) 87.1 11 0.00024 48.9 15.4 163 81-256 5-188 (1075)
66 KOG0166 Karyopherin (importin) 86.9 18 0.0004 43.7 16.3 165 81-247 67-258 (514)
67 PF02985 HEAT: HEAT repeat; I 86.6 0.85 1.8E-05 33.6 3.3 25 127-151 3-27 (31)
68 KOG1060 Vesicle coat complex A 86.4 16 0.00034 45.9 15.4 159 78-274 69-231 (968)
69 PF12755 Vac14_Fab1_bd: Vacuol 86.4 2.2 4.8E-05 40.3 6.8 81 96-180 2-88 (97)
70 PF12719 Cnd3: Nuclear condens 86.3 15 0.00033 41.4 14.8 135 98-251 1-139 (298)
71 PF02985 HEAT: HEAT repeat; I 86.1 0.68 1.5E-05 34.1 2.5 23 161-184 2-24 (31)
72 KOG1820 Microtubule-associated 85.6 5.2 0.00011 51.0 11.5 122 89-214 304-439 (815)
73 KOG1061 Vesicle coat complex A 85.3 23 0.00049 44.4 16.2 219 19-251 28-264 (734)
74 KOG1820 Microtubule-associated 85.2 12 0.00026 47.9 14.4 191 77-272 250-459 (815)
75 KOG0212 Uncharacterized conser 85.1 88 0.0019 38.3 20.2 131 76-211 121-272 (675)
76 KOG1243 Protein kinase [Genera 84.6 4.3 9.3E-05 50.1 9.7 175 75-256 325-515 (690)
77 COG5537 IRR1 Cohesin [Cell div 82.3 3.6 7.7E-05 49.9 7.5 121 74-202 204-349 (740)
78 KOG2171 Karyopherin (importin) 81.6 1E+02 0.0023 40.5 20.4 97 53-152 90-187 (1075)
79 PLN03200 cellulose synthase-in 81.6 41 0.00088 47.3 17.9 198 82-289 490-724 (2102)
80 KOG1061 Vesicle coat complex A 81.5 1.6E+02 0.0035 37.3 24.5 162 531-723 360-536 (734)
81 KOG1991 Nuclear transport rece 81.4 9.9 0.00022 48.6 11.3 97 77-179 459-566 (1010)
82 KOG2259 Uncharacterized conser 81.3 2 4.3E-05 52.4 5.0 82 132-214 381-471 (823)
83 PF01347 Vitellogenin_N: Lipop 80.3 4.3 9.3E-05 50.3 7.9 123 77-213 487-617 (618)
84 PF04118 Dopey_N: Dopey, N-ter 79.9 1.2E+02 0.0026 34.8 18.8 152 77-256 135-296 (307)
85 COG5218 YCG1 Chromosome conden 78.8 42 0.00092 41.0 14.6 188 92-295 59-269 (885)
86 KOG1517 Guanine nucleotide bin 77.9 7.1 0.00015 50.1 8.4 147 95-251 572-728 (1387)
87 KOG0211 Protein phosphatase 2A 77.3 36 0.00079 43.4 14.5 147 57-211 533-683 (759)
88 KOG0413 Uncharacterized conser 76.6 4.1 8.9E-05 51.6 5.9 124 131-256 938-1073(1529)
89 PF12460 MMS19_C: RNAPII trans 76.3 1.7E+02 0.0037 34.7 22.0 156 77-256 190-352 (415)
90 KOG4224 Armadillo repeat prote 75.8 37 0.00081 39.3 12.6 97 82-186 210-321 (550)
91 KOG0915 Uncharacterized conser 75.8 1.4E+02 0.003 40.7 19.1 241 6-273 923-1184(1702)
92 KOG1078 Vesicle coat complex C 73.8 20 0.00043 45.0 10.6 194 56-250 240-527 (865)
93 cd03572 ENTH_epsin_related ENT 71.2 6.3 0.00014 38.9 4.7 36 118-153 32-67 (122)
94 COG5098 Chromosome condensatio 70.9 8.2 0.00018 47.5 6.3 159 519-735 890-1053(1128)
95 KOG0212 Uncharacterized conser 70.3 96 0.0021 38.0 14.7 196 54-256 16-237 (675)
96 KOG2032 Uncharacterized conser 70.0 24 0.00051 42.3 9.7 169 78-251 215-412 (533)
97 PF04826 Arm_2: Armadillo-like 69.7 51 0.0011 36.6 12.0 97 83-184 15-119 (254)
98 PF13251 DUF4042: Domain of un 69.5 14 0.00031 39.0 7.2 113 95-214 1-170 (182)
99 KOG0213 Splicing factor 3b, su 68.8 1.7E+02 0.0037 37.1 16.6 189 77-271 880-1081(1172)
100 COG5240 SEC21 Vesicle coat com 68.6 3E+02 0.0065 34.1 28.5 58 517-579 488-547 (898)
101 KOG1517 Guanine nucleotide bin 68.4 21 0.00045 46.2 9.3 122 79-214 598-728 (1387)
102 PF12765 Cohesin_HEAT: HEAT re 67.5 7.1 0.00015 31.1 3.4 26 123-148 17-42 (42)
103 KOG2011 Sister chromatid cohes 66.7 14 0.00031 47.9 7.7 122 91-217 298-434 (1048)
104 PF05004 IFRD: Interferon-rela 66.7 66 0.0014 36.8 12.4 98 532-667 142-257 (309)
105 KOG0567 HEAT repeat-containing 66.6 38 0.00082 37.8 9.8 159 77-250 97-275 (289)
106 PF08623 TIP120: TATA-binding 66.0 17 0.00036 38.0 6.8 67 200-272 38-106 (169)
107 KOG1059 Vesicle coat complex A 65.7 1.2E+02 0.0026 38.3 14.6 191 78-289 297-505 (877)
108 PF04826 Arm_2: Armadillo-like 65.4 2.3E+02 0.0049 31.6 16.0 130 117-251 9-159 (254)
109 PF12765 Cohesin_HEAT: HEAT re 64.9 12 0.00026 29.8 4.3 30 220-249 12-41 (42)
110 COG5656 SXM1 Importin, protein 63.1 55 0.0012 41.2 11.2 71 77-152 457-527 (970)
111 PLN03200 cellulose synthase-in 62.9 32 0.00069 48.3 10.2 132 80-214 609-760 (2102)
112 KOG1077 Vesicle coat complex A 62.6 64 0.0014 40.4 11.5 106 74-186 323-430 (938)
113 KOG0413 Uncharacterized conser 62.0 4.9E+02 0.011 34.3 51.6 62 534-596 944-1006(1529)
114 KOG1243 Protein kinase [Genera 61.2 43 0.00092 41.8 9.9 145 64-214 352-511 (690)
115 PF14500 MMS19_N: Dos2-interac 60.8 52 0.0011 36.7 9.9 64 527-591 5-73 (262)
116 KOG1077 Vesicle coat complex A 59.9 3.2E+02 0.007 34.6 16.6 36 77-112 257-292 (938)
117 PF12397 U3snoRNP10: U3 small 59.1 34 0.00073 33.2 7.3 72 76-153 2-74 (121)
118 KOG1058 Vesicle coat complex C 56.4 90 0.0019 39.5 11.4 212 18-244 34-261 (948)
119 PF14500 MMS19_N: Dos2-interac 54.2 1.5E+02 0.0032 33.2 12.1 65 84-151 3-67 (262)
120 COG5181 HSH155 U2 snRNP splice 52.6 1E+02 0.0022 38.2 10.8 75 516-591 684-763 (975)
121 KOG1293 Proteins containing ar 51.7 5.4E+02 0.012 32.4 16.8 176 78-255 327-532 (678)
122 KOG1240 Protein kinase contain 50.7 4.4E+02 0.0095 35.5 16.4 176 75-251 502-721 (1431)
123 KOG1248 Uncharacterized conser 49.3 3.1E+02 0.0067 36.6 15.0 156 21-181 717-890 (1176)
124 COG5181 HSH155 U2 snRNP splice 48.9 5.1E+02 0.011 32.5 15.7 190 77-271 685-886 (975)
125 PF10363 DUF2435: Protein of u 48.1 1.3E+02 0.0028 28.2 8.9 66 83-152 6-71 (92)
126 PLN03237 DNA topoisomerase 2; 47.5 16 0.00035 49.3 3.7 33 938-971 1409-1441(1465)
127 PF10363 DUF2435: Protein of u 47.3 55 0.0012 30.7 6.2 68 529-596 11-81 (92)
128 KOG0946 ER-Golgi vesicle-tethe 45.7 3.4E+02 0.0073 34.9 14.0 91 80-172 122-221 (970)
129 smart00567 EZ_HEAT E-Z type HE 45.7 27 0.00059 25.2 3.2 28 138-169 1-28 (30)
130 KOG0915 Uncharacterized conser 42.7 84 0.0018 42.6 8.8 106 74-184 1033-1155(1702)
131 PF03130 HEAT_PBS: PBS lyase H 41.3 39 0.00084 24.2 3.3 25 140-168 1-25 (27)
132 PF11698 V-ATPase_H_C: V-ATPas 40.4 64 0.0014 31.8 5.7 69 76-151 43-113 (119)
133 PF14222 MOR2-PAG1_N: Cell mor 40.3 2.3E+02 0.005 35.2 11.9 113 21-151 130-247 (552)
134 PF10521 DUF2454: Protein of u 40.1 1E+02 0.0023 34.5 8.3 110 76-185 115-249 (282)
135 PF11707 Npa1: Ribosome 60S bi 38.5 6.7E+02 0.014 28.8 15.5 36 77-112 53-88 (330)
136 KOG4653 Uncharacterized conser 37.5 1.7E+02 0.0037 37.6 10.0 102 80-184 802-913 (982)
137 KOG2062 26S proteasome regulat 37.5 4.3E+02 0.0093 33.8 13.1 156 88-256 527-695 (929)
138 COG5116 RPN2 26S proteasome re 35.7 1.3E+02 0.0027 37.1 8.1 116 88-214 524-646 (926)
139 KOG1967 DNA repair/transcripti 35.6 1.6E+02 0.0035 38.1 9.4 104 76-183 905-1018(1030)
140 PTZ00479 RAP Superfamily; Prov 35.5 4.1E+02 0.0089 31.8 12.1 214 36-273 78-309 (435)
141 KOG2160 Armadillo/beta-catenin 35.4 7.8E+02 0.017 28.8 14.2 99 486-591 95-200 (342)
142 PF03224 V-ATPase_H_N: V-ATPas 35.4 3.4E+02 0.0075 30.7 11.6 180 8-214 20-220 (312)
143 PF05918 API5: Apoptosis inhib 34.9 2.8E+02 0.0061 34.4 11.2 127 48-184 27-157 (556)
144 KOG0392 SNF2 family DNA-depend 33.1 4.9E+02 0.011 35.3 13.1 177 8-215 739-922 (1549)
145 PF11865 DUF3385: Domain of un 31.6 40 0.00088 34.7 3.0 35 516-553 9-43 (160)
146 PF11864 DUF3384: Domain of un 31.5 2.9E+02 0.0064 33.3 10.8 110 138-258 4-119 (464)
147 KOG1293 Proteins containing ar 31.0 7.8E+02 0.017 31.1 13.9 179 530-752 386-569 (678)
148 KOG4413 26S proteasome regulat 29.6 9.5E+02 0.021 28.0 20.9 130 554-733 78-219 (524)
149 PF07462 MSP1_C: Merozoite sur 29.6 83 0.0018 38.3 5.4 23 984-1006 337-359 (574)
150 PF12530 DUF3730: Protein of u 29.4 5.3E+02 0.011 28.1 11.4 192 525-736 5-209 (234)
151 cd03569 VHS_Hrs_Vps27p VHS dom 29.1 1.3E+02 0.0029 30.3 6.2 64 122-185 39-110 (142)
152 PF04931 DNA_pol_phi: DNA poly 28.4 1.4E+02 0.0031 38.5 7.8 37 79-118 2-38 (784)
153 cd03561 VHS VHS domain family; 27.5 2.9E+02 0.0062 27.4 8.2 96 446-550 16-112 (133)
154 smart00543 MIF4G Middle domain 27.4 6.8E+02 0.015 25.5 12.9 120 2-136 2-131 (200)
155 KOG0917 Uncharacterized conser 27.3 1.4E+02 0.003 33.4 6.2 72 818-891 20-102 (338)
156 COG5215 KAP95 Karyopherin (imp 26.8 1.3E+02 0.0027 37.1 6.2 88 98-186 108-204 (858)
157 cd03561 VHS VHS domain family; 26.5 1.8E+02 0.0039 28.8 6.5 63 122-184 35-107 (133)
158 smart00543 MIF4G Middle domain 26.3 7.1E+02 0.015 25.4 12.9 85 59-143 96-187 (200)
159 KOG2933 Uncharacterized conser 26.0 4.5E+02 0.0097 30.3 10.0 111 78-192 127-237 (334)
160 KOG2181 LIM domain binding pro 25.8 1.7E+02 0.0038 33.1 6.6 34 897-938 255-288 (415)
161 KOG0211 Protein phosphatase 2A 25.0 1.5E+03 0.033 29.3 15.6 160 84-249 241-421 (759)
162 KOG0943 Predicted ubiquitin-pr 25.0 63 0.0014 42.4 3.4 56 913-1009 1686-1764(3015)
163 PF08167 RIX1: rRNA processing 24.7 4.1E+02 0.0089 27.3 9.0 90 118-214 19-115 (165)
164 KOG4535 HEAT and armadillo rep 24.3 2.1E+02 0.0046 34.6 7.3 71 41-111 106-181 (728)
165 KOG2213 Apoptosis inhibitor 5/ 24.2 1.2E+03 0.026 27.8 13.1 67 529-596 69-146 (460)
166 smart00229 RasGEFN Guanine nuc 24.2 4E+02 0.0087 25.6 8.5 56 95-150 70-125 (127)
167 PF01851 PC_rep: Proteasome/cy 24.1 1.2E+02 0.0026 23.1 3.7 34 144-178 2-35 (35)
168 KOG1967 DNA repair/transcripti 23.9 5.1E+02 0.011 33.9 10.9 91 59-151 929-1022(1030)
169 KOG2149 Uncharacterized conser 23.5 1.9E+02 0.0042 34.1 6.8 114 136-250 35-165 (393)
170 KOG0567 HEAT repeat-containing 23.2 3.2E+02 0.007 30.7 8.1 86 126-214 189-276 (289)
171 PF11838 ERAP1_C: ERAP1-like C 23.1 1.1E+03 0.023 26.3 19.1 98 137-255 168-265 (324)
172 PF00790 VHS: VHS domain; Int 22.9 2.2E+02 0.0047 28.5 6.4 96 446-549 21-117 (140)
173 PF05804 KAP: Kinesin-associat 22.6 1.7E+03 0.038 28.6 34.2 111 120-236 246-374 (708)
174 KOG3102 Uncharacterized conser 21.3 86 0.0019 33.7 3.2 45 933-977 3-50 (269)
175 PF12457 TIP_N: Tuftelin inter 20.5 64 0.0014 31.3 1.9 15 970-984 68-82 (109)
176 KOG1943 Beta-tubulin folding c 20.4 2.2E+03 0.047 29.0 16.1 74 120-193 337-416 (1133)
No 1
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=5.7e-115 Score=991.19 Aligned_cols=716 Identities=22% Similarity=0.280 Sum_probs=592.3
Q ss_pred hHHHHHHHHHhhhhhhhHHHHHHHHHHHhhCCChhhHHHHHHHhhhhhhccccCchhhHHHHHHHHHHHhhc-----chH
Q 001827 2 QVIAKILDESRTSYATHNRKLKDLRAVRSKSPSTAQFSSAFFKTLTPLFTVQRRTASAERVVRFVSAFAATN-----NDE 76 (1009)
Q Consensus 2 ~~I~~iF~~aQ~s~~~H~k~~~~L~~l~~~~~~~~~F~~~F~~~l~~iL~~~k~~~~~dRvikFva~f~~~~-----~~~ 76 (1009)
+++..||+++|++.++| +.+.+.++.+.-. +..|.++|.+.++++|+++|+++.+|||++|+++|+.+. +++
T Consensus 5 ~r~~~If~k~Q~s~agh--~~kl~~k~~em~t-~~~F~eeflr~vn~il~vkKresi~dRIl~fla~fv~sl~q~d~e~D 81 (892)
T KOG2025|consen 5 ERMQLIFNKIQQSDAGH--YSKLLAKVMEMLT-AHEFSEEFLRVVNYILLVKKRESIPDRILSFLARFVESLPQLDKEED 81 (892)
T ss_pred HHHHHHHHHHHhhhcch--HHHHHHHHHHhhh-HhhhHHHHHHHHHHheeeccCCCcHHHHHHHHHHHHHhhhccCchhh
Confidence 46899999999999999 3344455554433 479999999999999999999999999999999999974 678
Q ss_pred HHHHHHHHHHHHhccCCcchhHhHHHHHHHHHhcCCCCCcCCHHHHHHHHHHHHHHhCCCChhHHHHHHHHHhcccCCCC
Q 001827 77 FLEDFLKFLLVAAMAANKTARFRACQIISEIIMRLPDDTEVSDEVWDEVIECMKVKVGDKVSVIRTFAVRSLSRFVNDSD 156 (1009)
Q Consensus 77 f~~~ll~~Ll~~~~akdk~VR~R~cqli~~ll~~l~~~~~idedl~~~l~~~ll~Rl~DK~~~VR~qAv~aL~rlQ~~~~ 156 (1009)
|++.+|+||++|++||+|+||||+||+|+.++++.+ +|||++|+.|.++|+.|++||+|+||+|||.||+|||++++
T Consensus 82 lV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~---eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~ 158 (892)
T KOG2025|consen 82 LVAGTFYHLLRGTESKDKKVRFRVLQILALLSDENA---EIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPK 158 (892)
T ss_pred HHHHHHHHHHhcccCcchhHHHHHHHHHHHHhcccc---ccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCC
Confidence 999999999999999999999999999999999766 79999999999999999999999999999999999998776
Q ss_pred C--hHHHHHHHHhcCCCCCHHHHHHHHhhCCCCcccHHHHHHhhCCCChHHHHHHHHHHhccCCCCCCCHHHHHHHHHHh
Q 001827 157 N--SDILDLLLEVLPLEQNADVRKTIVLSLPPSNATSQAIIDCTLDVSESVRKAAYCVLANKFPLQSLSIKHRTMILKRG 234 (1009)
Q Consensus 157 d--~~v~~~ll~~l~~D~s~eVRraaL~~i~~~~~tl~~il~R~rDv~~~VRr~ay~~L~~~v~~~~lsi~qR~~LL~~G 234 (1009)
| +++++.|.++++||||+||||+||.||.+++.|+|+|++|+|||+..+||.+|+++.++++++++||++|+.||+||
T Consensus 159 dee~~v~n~l~~liqnDpS~EVRRaaLsnI~vdnsTlp~IveRarDV~~anRrlvY~r~lpkid~r~lsi~krv~Llewg 238 (892)
T KOG2025|consen 159 DEECPVVNLLKDLIQNDPSDEVRRAALSNISVDNSTLPCIVERARDVSGANRRLVYERCLPKIDLRSLSIDKRVLLLEWG 238 (892)
T ss_pred CCcccHHHHHHHHHhcCCcHHHHHHHHHhhccCcccchhHHHHhhhhhHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHh
Confidence 5 57999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCHHHHHHHHHHHHHHHHhhhcCCCHHHHhhhcCcccchHHHHHHHHHHHhh-----hhcccccccccCCCCCcccc
Q 001827 235 LADRSEAVSKECLKLMKDHWLAKHCNGNPIELLKYLDVETYELVGESVMAALLKE-----EYISSADVETEGDSSHCTQR 309 (1009)
Q Consensus 235 L~Dr~~~Vr~a~~~~L~~~Wl~~~~~gdi~~LL~~LDV~~~~~~ae~~L~~lf~~-----~~~~~~~~~~e~~~~~~i~~ 309 (1009)
|+||+.+||.||.++|...|++ ..+||++++|++|||.+++++|.+++++||+. +.++.++ ...
T Consensus 239 LnDRe~sVk~A~~d~il~~Wl~-~~dgni~ElL~~ldvsnss~vavk~lealf~~v~e~v~~~k~f~----------~~~ 307 (892)
T KOG2025|consen 239 LNDREFSVKGALVDAILSGWLR-FSDGNILELLERLDVSNSSEVAVKALEALFSGVREDVGSCKNFD----------LIL 307 (892)
T ss_pred hhhhhhHHHHHHHHHHHHHHhh-hccccHHHHHHHhccccchHHHHHHHHHHHHHHHHHhhhhhccc----------chh
Confidence 9999999999999999999998 68999999999999999999999999999994 1222221 334
Q ss_pred ccccCHHHHHHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHhhhcchHHHHHHhCchhHHHHHHHHHHH-------h--
Q 001827 310 IQLMEAEVALYWKTACRHLQMEAEAKGSDAAATMGTEAAVYAAEASDTNDLLERILPATVSDYVDLVKTH-------I-- 380 (1009)
Q Consensus 310 ~~~lt~E~af~wR~~~~~l~~~~~~~g~da~~~~~~~~~v~~~~~~~~~e~Le~~LP~~~~~y~~~~~~~-------~-- 380 (1009)
|+.+|||.||||+.+|-|+. | .++.+.++.++|+. ..|++++..+ .
T Consensus 308 ~~~~t~Eiaf~~~al~l~~~------~------------------~e~~e~le~i~pe~-~~~~d~l~~~i~~~~~~e~~ 362 (892)
T KOG2025|consen 308 VEDLTPEIAFLWCALCLKSK------G------------------DEGTEFLELILPEP-VVLVDYLLRYIQSVYEVEEE 362 (892)
T ss_pred hhcccHHHHHHHHHHHHHhh------c------------------chhhHHHHHhCCCH-HHHHHHHHHhhhhHHHHHHh
Confidence 89999999999999995543 2 25678999999983 4444433221 1
Q ss_pred -------hhccchhhHHHHHHHHHhhccCCCHHhhHHHHHHHHHHhcCCCCCccCCCCCeeeecccccC-CCChhHHHHH
Q 001827 381 -------DAGANYRFASRQLLLLGEMLDFSDATIRKVASAFVQDLLHRPLDYEVDDDGNKVVIGDGINL-GGDKDWADAV 452 (1009)
Q Consensus 381 -------~~~~~~~Fi~~QLL~ia~~~D~sDE~GRr~~~~ll~~lL~~p~~~~~~d~~~~~~i~~~i~~-~~e~d~~~~v 452 (1009)
..+..++||++||+.|+..|||+||+|||+|++++++||+.+ .+|+.....+|.....+ ..+.||+..+
T Consensus 363 ~~~~~~~~~~~~~~fi~eqL~~i~~syD~sdE~gRkklL~vv~n~Lal~---tlp~slVs~~Ve~l~~i~s~endf~~~l 439 (892)
T KOG2025|consen 363 SGSKSYISNYMTQEFIIEQLFRIARSYDFSDEAGRKKLLSVVYNLLALN---TLPISLVSEVVEELMQIASLENDFTDDL 439 (892)
T ss_pred ccchhhhhhhhhHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhhc---cCchHHHHHHHHHHHHHHhhcchHHHHH
Confidence 124678999999999999999999999999999999999985 45665443333221111 2467999999
Q ss_pred HHHHHHHhhchhh---------------------HHHHHhhHHHhh--ccc----c---ccc------chhhhHHHHHHH
Q 001827 453 SRLARKVHAATGE---------------------FEEIMTGAVKEL--ALP----C---RER------TADFIQWMHSLA 496 (1009)
Q Consensus 453 ~el~~~l~~~~~e---------------------~ee~~~~~~~el--~~~----~---~E~------~~d~~~~lrCL~ 496 (1009)
.+++.++.....+ .|+.+. .++. ..| . +++ ........+||+
T Consensus 440 ~EiI~eIr~~~n~ka~~rk~~~~na~~~~kn~~~~ee~~~--~q~~~~a~p~lr~nelnv~E~d~in~~~~ekn~~~cl~ 517 (892)
T KOG2025|consen 440 NEIIGEIRKPKNAKASPRKKELKNAEIKVKNCLMLEECVC--KQVMKHARPLLRLNELNVEEIDLINLSSGEKNVEICLV 517 (892)
T ss_pred HHHHHHHhcccccccChhhhhcccchhhhhhhhhhhhhhh--hhhhcccCcccccccCCCccccccccCchHHHHHHHHH
Confidence 9999888763111 011110 0011 000 0 110 011123789999
Q ss_pred HHHHHHhhccccccccCCCccHHHHHHhhhhcccCCCCHHHHHHHHHHHhhHHhcCCcchHHHHHHHHHHHhhCChhHHH
Q 001827 497 VTGLLLENAKSFHLIQGKPAESAELLHSLLLPGAKHVHLDVQRVAIRCLGLFGLLENKPSEELVKQLRLSFVKGCPTVSI 576 (1009)
Q Consensus 497 i~~~lLe~v~~~~~l~~~~~~l~~ll~sLIlPaV~~~~~~VR~~al~CLGL~cLldk~~a~~~~~ll~~~~~~~~~~vki 576 (1009)
.+++|||+++.+ + +.+..+.+++++||.|+|++.+|.||++|+.|||||||++.++|.+++.++.+|.++|+..+|+
T Consensus 518 ~~yylle~~~~s--l-~esl~mn~~~~sLi~pavrs~~l~iRelglKOGglccLln~dlA~en~~ill~c~~kg~v~LK~ 594 (892)
T KOG2025|consen 518 GFYYLLERPHHS--L-IESLVMNMEANSLIFPAVRSLVLSIRELGLLCLGLCCLLNGDLAKENDDILLPCSQKGKVALKH 594 (892)
T ss_pred HHHHHHhcccch--H-HHHHHHHHHHHHHHHHHHHhcCccHHhhhhhhhhhhhhcchhhhhhcCcEEEEeeecCceEEEe
Confidence 999999999863 3 3467899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhCCchhhhhcccCcCCCCCCCCCCCCCCCCCCCCCccchhHHHHHHHHhhhcccCCCCCCCCchhHHH
Q 001827 577 MAGKALIDLGMWHGPQEVDKAMGQKDISFQPRNDKMTSSPINLSETDGDLNVELLDLLYAGIVASDRGKYSGDENESIEA 656 (1009)
Q Consensus 577 ~ALkaifDlll~hG~~~ld~~~~~~~~~s~~~~~~~~~~~~~~s~~e~~~~~~llklL~~~L~~~~~~~~~~~e~~evq~ 656 (1009)
+|+++|+|+++.||...+. .++..+++++++.|.+ ++.+|.|+
T Consensus 595 ~al~~l~D~fi~fg~e~fk-----------------------------~~~d~~lki~~~~L~~--------~~~~E~qt 637 (892)
T KOG2025|consen 595 RALDDLRDRFIAFGLERFK-----------------------------CTQDDHLKIYCSILFF--------ELFSEDQT 637 (892)
T ss_pred ehHHHHHHHHHHhccccce-----------------------------echHHHHHHHHHHHcc--------ccchHHHH
Confidence 9999999999999974321 1256789999999875 46799999
Q ss_pred HHHHHHHHHhhcCCCCCCCCchhhHHHHHHHHHHhcCCCCcchhHHHHHHHhhhcccccCCH-------HHHHHHHHHhH
Q 001827 657 VIGEGFAKVLLLSEKYPSIPASLHSLLLAKLINLYFSNESKDLQRLKQCLSIFFEHYASLSA-------NHKRCLSKAFV 729 (1009)
Q Consensus 657 iaaEGlaKLLL~~~~~~~~~~~~~~~lLs~LvLlyFnP~t~~n~~LRQcLsvFFp~ya~ss~-------~nQ~~l~~aFl 729 (1009)
+++||+||+++.-. ++ +..++..|++.||.|.+..|+.+||.++||||+|+++-. .++.+++++++
T Consensus 638 l~aea~cKlll~l~-~~------del~f~~l~l~yf~p~~~~n~alrqll~y~ipvy~fs~hen~~r~~tl~~dle~s~l 710 (892)
T KOG2025|consen 638 LLAEAFCKLLLVLP-CS------DELVFIDLSLYYFGPSKYANVALRQLLFYNIPVYLFSEHENDQRGKTLVKDLERSEL 710 (892)
T ss_pred HHHHHHHHHHhhhh-cc------hHhhhhhhhhhhcccccchhHHHHHHHHHHHhhhcchhhhHHHhhhHHHHHHHHhhh
Confidence 99999999999542 22 478999999999999999999999999999999998754 45689999999
Q ss_pred HHHHhhcccccCCCCCCccccchhhhhhHHHHHHHHHhhcccccccccccccccCCCCCCCCCcccccCccccchhhHHH
Q 001827 730 PALRSMWPGINGNAGGSSLVVSNKRKRAVQASKFLLQMMQAPLYAKETEVEDENGIGNMPETSDVSEQSSLECGEEGLAI 809 (1009)
Q Consensus 730 ptL~~l~~~~~~na~~ss~~~s~~~~~~~~v~~f~~~l~~~~~~~~~t~~~~~~~~~~~~~~d~~~~~~~~~~~h~~LAi 809 (1009)
|+.+.+ ++++.+.+..++ +.+ +..++.+|++...++++..++ ..+ ...+|..||.
T Consensus 711 p~~~dl-----am~k~~l~~~~i-------~~~-------~~~lvd~tg~~~r~tq~~dd~----d~i--~~~vh~~lkk 765 (892)
T KOG2025|consen 711 PRCWDL-----AMTKKILFCCSI-------VAR-------KHGLVDSTGEVIRRTQEIDDG----DPI--SQEVHCDLKK 765 (892)
T ss_pred hhhcch-----hhccccchHHHH-------HHH-------Hhhhhhcccchhccccccccc----cHH--HHHHHHHHHH
Confidence 999998 688877776664 222 334445555554555432222 233 3578999999
Q ss_pred HHHHHHHhcCCCCChhhHHHHHHHHHHHh
Q 001827 810 RIAVEVLSIHMKKTPAERSFVSALCRILV 838 (1009)
Q Consensus 810 ~i~~Eil~~~~~~~~~~~~y~~aL~k~l~ 838 (1009)
+|++||+..|+ +|+.+.|.++|.+++.
T Consensus 766 ~I~n~i~t~~~--~~e~~~~~s~L~~L~~ 792 (892)
T KOG2025|consen 766 DIENEILTSPC--SPEIRVYTSALSSLEL 792 (892)
T ss_pred HHHHHhccCCC--ChhHHHHHHHHHhhcc
Confidence 99999999988 7999999999997763
No 2
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=100.00 E-value=1.2e-102 Score=872.85 Aligned_cols=788 Identities=19% Similarity=0.230 Sum_probs=617.4
Q ss_pred hHHHHHHHHHhhhhhhhHHHHHHHHHHHhhCCChhhHHHHHHHhhhhhhccccCchhhHHHHHHHHHHHhhc------ch
Q 001827 2 QVIAKILDESRTSYATHNRKLKDLRAVRSKSPSTAQFSSAFFKTLTPLFTVQRRTASAERVVRFVSAFAATN------ND 75 (1009)
Q Consensus 2 ~~I~~iF~~aQ~s~~~H~k~~~~L~~l~~~~~~~~~F~~~F~~~l~~iL~~~k~~~~~dRvikFva~f~~~~------~~ 75 (1009)
+++..||+++|+|+++|||++..|.+++- +..|..+|.+.++.||++||++..++||++|++.|+.+. +.
T Consensus 11 ~s~~~if~k~Q~s~aGhrk~~a~l~~~~t----~~~f~~~flr~vn~IL~~Kk~~si~dRil~fl~~f~~Y~~~~dpeg~ 86 (885)
T COG5218 11 ESMQLIFNKIQQSSAGHRKSLAELMEMLT----AHEFSEEFLRVVNTILACKKNPSIPDRILSFLKRFFEYDMPDDPEGE 86 (885)
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHHH----HHhhHHHHHHHHHHhhccccCCCcHHHHHHHHHHHHHhcCCCChhhh
Confidence 47899999999999999999999999873 258999999999999999999999999999999999964 46
Q ss_pred HHHHHHHHHHHHHhccCCcchhHhHHHHHHHHHhcCCCCCcCCHHHHHHHHHHHHHHhCCCChhHHHHHHHHHhcccCCC
Q 001827 76 EFLEDFLKFLLVAAMAANKTARFRACQIISEIIMRLPDDTEVSDEVWDEVIECMKVKVGDKVSVIRTFAVRSLSRFVNDS 155 (1009)
Q Consensus 76 ~f~~~ll~~Ll~~~~akdk~VR~R~cqli~~ll~~l~~~~~idedl~~~l~~~ll~Rl~DK~~~VR~qAv~aL~rlQ~~~ 155 (1009)
+|+..+|+|+++|.+||||+|||||||+|+.+++.++ +||+++|+.+.+.+.+|++|++|.||.+||.+|++||...
T Consensus 87 ~~V~~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~---eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~ 163 (885)
T COG5218 87 ELVAGTFYHLLRGTESKDKKVRKRSLQILALLSDVVR---EIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEME 163 (885)
T ss_pred HHHHHHHHHHHhcccCcchhHHHHHHHHHHHHHHhcc---hHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhcc
Confidence 7999999999999999999999999999999999999 6999999999999999999999999999999999999776
Q ss_pred CCh--HHHHHHHHhcCCCCCHHHHHHHHhhCCCCcccHHHHHHhhCCCChHHHHHHHHHHhccC-CCCCCCHHHHHHHHH
Q 001827 156 DNS--DILDLLLEVLPLEQNADVRKTIVLSLPPSNATSQAIIDCTLDVSESVRKAAYCVLANKF-PLQSLSIKHRTMILK 232 (1009)
Q Consensus 156 ~d~--~v~~~ll~~l~~D~s~eVRraaL~~i~~~~~tl~~il~R~rDv~~~VRr~ay~~L~~~v-~~~~lsi~qR~~LL~ 232 (1009)
.|. .+++.|++++++|||+||||+||.||..++.|+|+|++|+|||+..+||.+|.++.+++ ++++++++.|+.|++
T Consensus 164 ~neen~~~n~l~~~vqnDPS~EVRr~allni~vdnsT~p~IlERarDv~~anRr~vY~r~Lp~iGd~~~lsi~kri~l~e 243 (885)
T COG5218 164 LNEENRIVNLLKDIVQNDPSDEVRRLALLNISVDNSTYPCILERARDVSGANRRMVYERCLPRIGDLKSLSIDKRILLME 243 (885)
T ss_pred CChHHHHHHHHHHHHhcCcHHHHHHHHHHHeeeCCCcchhHHHHhhhhhHHHHHHHHHHHhhhhcchhhccccceehhhh
Confidence 654 58889999999999999999999999999999999999999999999999999999888 899999999999999
Q ss_pred HhhcCCCHHHHHHHHHHHHHHHHhhhcCCCHHHHhhhcCcccchHHHHHHHHHHHhh--hhcccccccccCCCCCccccc
Q 001827 233 RGLADRSEAVSKECLKLMKDHWLAKHCNGNPIELLKYLDVETYELVGESVMAALLKE--EYISSADVETEGDSSHCTQRI 310 (1009)
Q Consensus 233 ~GL~Dr~~~Vr~a~~~~L~~~Wl~~~~~gdi~~LL~~LDV~~~~~~ae~~L~~lf~~--~~~~~~~~~~e~~~~~~i~~~ 310 (1009)
|||.||+.+|++||..++...|+. ..+|++++||++|||.++ ++++++++.+|.. +.+.+. .+....|
T Consensus 244 wgl~dRe~sv~~a~~d~ia~~w~~-~~d~~lveLle~lDvSr~-sv~v~aik~~F~~R~D~ls~~--------eFPe~~w 313 (885)
T COG5218 244 WGLLDREFSVKGALVDAIASAWRI-PEDLRLVELLEFLDVSRR-SVLVAAIKGVFEKRPDVLSEK--------EFPEYLW 313 (885)
T ss_pred hcchhhhhhHHHHHHHHHHHHhcc-cccccHHHHHHHHhhhhH-HHHHHHHHHHHhhccccchhh--------hcHHHHh
Confidence 999999999999999999999998 589999999999999876 5999999999998 222211 1224458
Q ss_pred cccCHHHHHHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHhhhcchHHHHHHhCchhH--HHHHHHHHHH--hhhccch
Q 001827 311 QLMEAEVALYWKTACRHLQMEAEAKGSDAAATMGTEAAVYAAEASDTNDLLERILPATV--SDYVDLVKTH--IDAGANY 386 (1009)
Q Consensus 311 ~~lt~E~af~wR~~~~~l~~~~~~~g~da~~~~~~~~~v~~~~~~~~~e~Le~~LP~~~--~~y~~~~~~~--~~~~~~~ 386 (1009)
..+|.|.+|+.|++..||-+. ...++|++ +|+++ .+|++.|-+. .-.+.+.
T Consensus 314 ~d~T~E~tfL~rt~~lyCldn------------------------Nitell~~-fPe~~~L~~~~~hyvslry~sSYnt~ 368 (885)
T COG5218 314 SDPTEENTFLSRTELLYCLDN------------------------NITELLGR-FPESLALPDLESHYVSLRYRSSYNTL 368 (885)
T ss_pred hCchHHHHHHHHHHHHHHHhc------------------------cHHHHHhh-chhhhcchHHHhhheeeeeccccchh
Confidence 999999999999999999764 56789998 89853 5565532211 1124567
Q ss_pred hhHHHHHHHHHhhccCCCHHhhHHHHHHHHHHhcCCCCCccCCCCCeeeec--ccccCCCChhHHHHHHHHHHHHhhch-
Q 001827 387 RFASRQLLLLGEMLDFSDATIRKVASAFVQDLLHRPLDYEVDDDGNKVVIG--DGINLGGDKDWADAVSRLARKVHAAT- 463 (1009)
Q Consensus 387 ~Fi~~QLL~ia~~~D~sDE~GRr~~~~ll~~lL~~p~~~~~~d~~~~~~i~--~~i~~~~e~d~~~~v~el~~~l~~~~- 463 (1009)
+||++||.-++..|||+||+|||+++..+++||+.. .++|....+-|. ..+. -++.||+....+++.++.+..
T Consensus 369 cfiIeqLs~aa~r~D~sdE~gRr~~l~~~~N~l~~~---~l~d~liki~Ie~~rkl~-~sE~df~~la~eiI~ev~e~~~ 444 (885)
T COG5218 369 CFIIEQLSIAAERYDYSDESGRRAQLEAMKNLLRIA---RLYDFLIKIGIEASRKLI-LSETDFKLLAKEIIEEVVEEAI 444 (885)
T ss_pred HHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHH---hhhHHHHHHHHHHHHHHh-cchhHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999863 355544332221 1111 246788888778777665432
Q ss_pred --hhHHHHHhhHHH----------hhc---c-cc---------c------ccchhhhHHHHHHHHHHHHHhhcccccccc
Q 001827 464 --GEFEEIMTGAVK----------ELA---L-PC---------R------ERTADFIQWMHSLAVTGLLLENAKSFHLIQ 512 (1009)
Q Consensus 464 --~e~ee~~~~~~~----------el~---~-~~---------~------E~~~d~~~~lrCL~i~~~lLe~v~~~~~l~ 512 (1009)
.+.|+-....+- ++. + +. + ...+...+..+||+.|++|+|++.+ +|.
T Consensus 445 ek~eqEEq~~s~v~e~d~N~~~g~ei~~~~kS~v~nL~~~n~N~sEsD~in~~~ssa~~~~CL~~~~~~~e~i~t--pL~ 522 (885)
T COG5218 445 EKMEQEEQIASLVCEDDLNNFIGSEIKKNAKSAVENLVQGNGNVSESDIINNLPSSASPRMCLMVCKHVMEHIRT--PLS 522 (885)
T ss_pred HHHHHHHhhcccCCccccccccchhhcccccccccccCCCCCCCCCchhhccCccccchHHHHHHHHHHHHHccC--cch
Confidence 222222211111 110 0 00 0 0112335689999999999999997 465
Q ss_pred CCCccHHHHHHhhhhcccCCCCHHHHHHHHHHHhhHHhcCCcchHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHhhCCc
Q 001827 513 GKPAESAELLHSLLLPGAKHVHLDVQRVAIRCLGLFGLLENKPSEELVKQLRLSFVKGCPTVSIMAGKALIDLGMWHGPQ 592 (1009)
Q Consensus 513 ~~~~~l~~ll~sLIlPaV~~~~~~VR~~al~CLGL~cLldk~~a~~~~~ll~~~~~~~~~~vki~ALkaifDlll~hG~~ 592 (1009)
. |..+.+++++||+|+|+|+.|.||+.||+|||+|||+|..+|.+++.++++|+.+|+..+|.+|+|.++||++.||.+
T Consensus 523 e-Nil~~~~~~tlI~Pavrn~a~~IrE~gve~L~l~clldv~La~~n~~i~~~cv~KGn~~lk~~A~q~~vDl~~~hg~~ 601 (885)
T COG5218 523 E-NILHEAIVETLILPAVRNSAPNIRETGVEILELGCLLDVALARPNHAIIQSCVHKGNMELKSMAFQMCVDLVLSHGDE 601 (885)
T ss_pred h-hHHHHHHHHHHhhhhhccCCCchhhhhhhhhhhhhhhhHhhcCCchHHHHHHHhccchhHHHHHHHHHHHHHHHhccc
Confidence 5 467899999999999999999999999999999999999999999999999999999999999999999999999952
Q ss_pred hhhhhcccCcCCCCCCCCCCCCCCCCCCCCCccchhHHHHHHHHhhhcccCCCCCCCCchhHHHHHHHHHHHHhhcCCCC
Q 001827 593 EVDKAMGQKDISFQPRNDKMTSSPINLSETDGDLNVELLDLLYAGIVASDRGKYSGDENESIEAVIGEGFAKVLLLSEKY 672 (1009)
Q Consensus 593 ~ld~~~~~~~~~s~~~~~~~~~~~~~~s~~e~~~~~~llklL~~~L~~~~~~~~~~~e~~evq~iaaEGlaKLLL~~~~~ 672 (1009)
- +++-..-+.++|++.+.. .+.+|.|+++|||+|||+++ +++
T Consensus 602 g-----------------------------~~k~ds~l~~Il~~~l~~--------~e~~E~q~i~aegl~Kl~l~-~~~ 643 (885)
T COG5218 602 G-----------------------------EGKLDSLLGDILRHILQG--------LETKERQDIIAEGLSKLALS-HRM 643 (885)
T ss_pred c-----------------------------cchHHHHHHHHHHHHHhc--------cCchhHHHHhhhHHHHHHHH-HhC
Confidence 1 111122368999999864 68999999999999999995 466
Q ss_pred CCCCchhhHHHHHHHHHHhcCCCCcchhHHHHHHHhhhcccccCCHHHHHHHHHHhHHHHHhhcccccCCCCCCccccch
Q 001827 673 PSIPASLHSLLLAKLINLYFSNESKDLQRLKQCLSIFFEHYASLSANHKRCLSKAFVPALRSMWPGINGNAGGSSLVVSN 752 (1009)
Q Consensus 673 ~~~~~~~~~~lLs~LvLlyFnP~t~~n~~LRQcLsvFFp~ya~ss~~nQ~~l~~aFlptL~~l~~~~~~na~~ss~~~s~ 752 (1009)
+ +...+..|++.||.|.+.+|.+|+|.+++|||+|+|+.+.||++|...|...|-.++ .+|...|..--|.++
T Consensus 644 ~------Ddl~~~~l~~~yf~p~~~~n~aL~Q~~~~~fPvy~Fs~~~hQ~Rmsrt~~d~ll~lc-~v~~dL~E~Damls~ 716 (885)
T COG5218 644 P------DDLRSRFLAFAYFRPYCTQNDALKQYCSILFPVYLFSEDSHQQRMSRTATDLLLILC-SVLEDLPEVDAMLSH 716 (885)
T ss_pred c------hHHHHhHHHHHHhCcccCchHHHHHHHhhheeeeeccCchHHHHHHHHHHHHHHHHH-HHHHhcchhhhhcCh
Confidence 5 478899999999999999999999999999999999999999999999998886654 233444532233332
Q ss_pred hhhhhHHHHHHHHHhhcccccccccccccccCCCCCCCCCcccccCccccchhhHHHHHHHHHHhcCCCCChhhHHHHHH
Q 001827 753 KRKRAVQASKFLLQMMQAPLYAKETEVEDENGIGNMPETSDVSEQSSLECGEEGLAIRIAVEVLSIHMKKTPAERSFVSA 832 (1009)
Q Consensus 753 ~~~~~~~v~~f~~~l~~~~~~~~~t~~~~~~~~~~~~~~d~~~~~~~~~~~h~~LAi~i~~Eil~~~~~~~~~~~~y~~a 832 (1009)
-.+.+=++-+|++.-+..+|...+. | ..+ -.|...-.++.....+-+- -+. ..--+.
T Consensus 717 -----~~i~qQ~L~Wtdn~kl~nqt~sTg~---------d--~~~----lnq~mi~~~~n~ifesL~N-vs~--~K~rk~ 773 (885)
T COG5218 717 -----KVIIQQSLYWTDNSKLANQTGSTGS---------D--LLF----LNQIMICVRLNSIFESLDN-VSQ--DKTRKT 773 (885)
T ss_pred -----hHHHHHHHhhcCcHHHHhccCCCcc---------c--hhh----hhhhHHHHHHHHHHhcCcc-cch--hhHHhH
Confidence 1245567778888777655431100 1 111 1122222222222233110 011 112356
Q ss_pred HHHHHhhhcccccchh----HHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHhccCCCCCCcccChhHHHHHhhhccccc
Q 001827 833 LCRILVLIQFRLSEQG----AIKLMRRLLNHIFESVSTERDLVKELKRMSDRLTGLDKHPDEELSQDEANLIFGRLELDF 908 (1009)
Q Consensus 833 L~k~l~~l~l~~s~~~----~~k~l~~Ll~~~~~~~~~Dk~~~k~l~k~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~ 908 (1009)
|.+++..++++...++ .+| +.|.......-..|-.-+--++++..-+.-.|..|-++..+.|....|++..++.
T Consensus 774 l~slle~i~~~sel~~~D~~~Tk--~~l~~~~s~~f~~dt~~lsi~~~~~r~~eq~~~~~rS~~e~~d~~k~lENms~qd 851 (885)
T COG5218 774 LVSLLERIEVRSELRCWDPRMTK--KILFCCSSVAFKHDTSRLSIGEVIRRLMEQDDGDPRSQEELCDVKKDLENMSIQD 851 (885)
T ss_pred HHHHHHHhcccccCCCCChhhHH--HHHHHHhhcccccCccceeHHHHHHHHHHhcCCCcccHHHHhhHhhhhhhccccc
Confidence 7777777777554332 233 3333332222234655666677777777777788888888888888888887654
No 3
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=100.00 E-value=4.1e-53 Score=471.15 Aligned_cols=284 Identities=32% Similarity=0.436 Sum_probs=241.9
Q ss_pred HHHHHHHHHHHhhccccccccCCCccHHHHHHhhhhcccCCCCHHHHHHHHHHHhhHHhcCCcchHHHHHHHHHHHhhCC
Q 001827 492 MHSLAVTGLLLENAKSFHLIQGKPAESAELLHSLLLPGAKHVHLDVQRVAIRCLGLFGLLENKPSEELVKQLRLSFVKGC 571 (1009)
Q Consensus 492 lrCL~i~~~lLe~v~~~~~l~~~~~~l~~ll~sLIlPaV~~~~~~VR~~al~CLGL~cLldk~~a~~~~~ll~~~~~~~~ 571 (1009)
||||+|+++|||+++. .++ +++.+.+++++||+|+|+|++++||+.|++|||+|||+|+++|.+++.+|++++.+++
T Consensus 1 lkcL~i~~~lL~~~~~--~~~-~~~~l~~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a~~~l~l~~~~~~~~~ 77 (298)
T PF12719_consen 1 LKCLSITQSLLENVSS--SLS-PNISLESLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKELAKEHLPLFLQALQKDD 77 (298)
T ss_pred CcHHHHHHHHHHhccc--cCC-CcchHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHhCC
Confidence 5999999999999984 343 4568889999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHhhCCchhhhhcccCcCCCCCCCCCCCCCCCCCCCCCccchhHHHHHHHHhhhcccCCCCCCCCc
Q 001827 572 PTVSIMAGKALIDLGMWHGPQEVDKAMGQKDISFQPRNDKMTSSPINLSETDGDLNVELLDLLYAGIVASDRGKYSGDEN 651 (1009)
Q Consensus 572 ~~vki~ALkaifDlll~hG~~~ld~~~~~~~~~s~~~~~~~~~~~~~~s~~e~~~~~~llklL~~~L~~~~~~~~~~~e~ 651 (1009)
+.||++|+++|||++++||.+.++..... .++.....++++|++++.+ ++
T Consensus 78 ~~v~~~al~~l~Dll~~~g~~~~~~~~~~---------------------~~~~~~~~l~~~l~~~l~~---------~~ 127 (298)
T PF12719_consen 78 EEVKITALKALFDLLLTHGIDIFDSESDN---------------------DESVDSKSLLKILTKFLDS---------EN 127 (298)
T ss_pred HHHHHHHHHHHHHHHHHcCchhccchhcc---------------------CccchHhHHHHHHHHHHhc---------CC
Confidence 99999999999999999999877643110 0123478899999999873 58
Q ss_pred hhHHHHHHHHHHHHhhcCCCCCCCCchhhHHHHHHHHHHhcCCCCcchhHHHHHHHhhhcccccCCHHHHHHHHHHhHHH
Q 001827 652 ESIEAVIGEGFAKVLLLSEKYPSIPASLHSLLLAKLINLYFSNESKDLQRLKQCLSIFFEHYASLSANHKRCLSKAFVPA 731 (1009)
Q Consensus 652 ~evq~iaaEGlaKLLL~~~~~~~~~~~~~~~lLs~LvLlyFnP~t~~n~~LRQcLsvFFp~ya~ss~~nQ~~l~~aFlpt 731 (1009)
+++|+++|||||||||+|++.+ .+++|++|+++||+|.|++|++|||||+||||+||++++.||++|+++|+||
T Consensus 128 ~~~~~~a~EGl~KLlL~~~i~~------~~~vL~~Lll~yF~p~t~~~~~LrQ~L~~Ffp~y~~s~~~~Q~~l~~~f~~~ 201 (298)
T PF12719_consen 128 PELQAIAVEGLCKLLLSGRISD------PPKVLSRLLLLYFNPSTEDNQRLRQCLSVFFPVYASSSPENQERLAEAFLPT 201 (298)
T ss_pred HHHHHHHHHHHHHHHhcCCCCc------HHHHHHHHHHHHcCcccCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 9999999999999999997752 2899999999999999999999999999999999999999999999999999
Q ss_pred HHhhcccccCCCCCC--ccccchhhhhhHHHHHHHHHhhcccccccccccccccCCCCCCCCCcccccCccccchhhHHH
Q 001827 732 LRSMWPGINGNAGGS--SLVVSNKRKRAVQASKFLLQMMQAPLYAKETEVEDENGIGNMPETSDVSEQSSLECGEEGLAI 809 (1009)
Q Consensus 732 L~~l~~~~~~na~~s--s~~~s~~~~~~~~v~~f~~~l~~~~~~~~~t~~~~~~~~~~~~~~d~~~~~~~~~~~h~~LAi 809 (1009)
|+++| +++.+ +|...+ .+.++++|+++||+++..+..+... . +..++|++||+
T Consensus 202 l~~~~-----~~~~~~~~~~~~v---~~~~v~~~lv~lt~~~~~~~~~~~~---------------~--~~~~~h~~La~ 256 (298)
T PF12719_consen 202 LRTLS-----NAPDELDSPLAMV---SPSQVASFLVDLTDPSKLVKESNQE---------------I--QNESVHVDLAI 256 (298)
T ss_pred HHHHH-----hCcccccCchhhC---CHHHHHHHHHHHCChhhccCccccc---------------c--ccccHHHHHHH
Confidence 99997 55654 666555 4667999999999998877644211 0 02578999999
Q ss_pred HHHHHHHhcCCCCChhhHHHHHHHHHHHhh
Q 001827 810 RIAVEVLSIHMKKTPAERSFVSALCRILVL 839 (1009)
Q Consensus 810 ~i~~Eil~~~~~~~~~~~~y~~aL~k~l~~ 839 (1009)
+||+|+++++.++....|+|+++|+|+...
T Consensus 257 ~il~~i~~~~~~~~~~~k~~~~~L~~L~i~ 286 (298)
T PF12719_consen 257 DILNEILSDPEKEKEERKALCKALSKLEIS 286 (298)
T ss_pred HHHHHHHhccccchHHHHHHHHHHhccccC
Confidence 999999998765444777777777755544
No 4
>PRK09687 putative lyase; Provisional
Probab=98.37 E-value=1.1e-05 Score=90.03 Aligned_cols=157 Identities=17% Similarity=0.198 Sum_probs=102.0
Q ss_pred HHHHHHHhccCCcchhHhHHHHHHHHHhcCCCCCcCCHHHHHHHHHHHHHHhCCCChhHHHHHHHHHhcccCCCC--ChH
Q 001827 82 LKFLLVAAMAANKTARFRACQIISEIIMRLPDDTEVSDEVWDEVIECMKVKVGDKVSVIRTFAVRSLSRFVNDSD--NSD 159 (1009)
Q Consensus 82 l~~Ll~~~~akdk~VR~R~cqli~~ll~~l~~~~~idedl~~~l~~~ll~Rl~DK~~~VR~qAv~aL~rlQ~~~~--d~~ 159 (1009)
+..+.....+.|..||.-++..+++ +++......+.+..|...+ ++|+++.||..|+.+|+.+..... ...
T Consensus 56 ~~~l~~ll~~~d~~vR~~A~~aLg~----lg~~~~~~~~a~~~L~~l~---~~D~d~~VR~~A~~aLG~~~~~~~~~~~~ 128 (280)
T PRK09687 56 FRLAIELCSSKNPIERDIGADILSQ----LGMAKRCQDNVFNILNNLA---LEDKSACVRASAINATGHRCKKNPLYSPK 128 (280)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHh----cCCCccchHHHHHHHHHHH---hcCCCHHHHHHHHHHHhcccccccccchH
Confidence 3344444567788888888877777 3321111222332222221 578888888888888888853322 223
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHhhCCC--CcccHHHHHHhhCCCChHHHHHHHHHHhccCCCCCCCHHHHHHHHHHhhcC
Q 001827 160 ILDLLLEVLPLEQNADVRKTIVLSLPP--SNATSQAIIDCTLDVSESVRKAAYCVLANKFPLQSLSIKHRTMILKRGLAD 237 (1009)
Q Consensus 160 v~~~ll~~l~~D~s~eVRraaL~~i~~--~~~tl~~il~R~rDv~~~VRr~ay~~L~~~v~~~~lsi~qR~~LL~~GL~D 237 (1009)
.+..+...+ +|+++.||+.++..+.. ++..++.++..+.|.++.||..|-..|+. ++. =+..- ...|-..|.|
T Consensus 129 a~~~l~~~~-~D~~~~VR~~a~~aLg~~~~~~ai~~L~~~L~d~~~~VR~~A~~aLg~-~~~--~~~~~-~~~L~~~L~D 203 (280)
T PRK09687 129 IVEQSQITA-FDKSTNVRFAVAFALSVINDEAAIPLLINLLKDPNGDVRNWAAFALNS-NKY--DNPDI-REAFVAMLQD 203 (280)
T ss_pred HHHHHHHHh-hCCCHHHHHHHHHHHhccCCHHHHHHHHHHhcCCCHHHHHHHHHHHhc-CCC--CCHHH-HHHHHHHhcC
Confidence 556655555 57888888888877753 46678888888888888888888888883 321 12233 3344458888
Q ss_pred CCHHHHHHHHHHH
Q 001827 238 RSEAVSKECLKLM 250 (1009)
Q Consensus 238 r~~~Vr~a~~~~L 250 (1009)
.++.||.++...|
T Consensus 204 ~~~~VR~~A~~aL 216 (280)
T PRK09687 204 KNEEIRIEAIIGL 216 (280)
T ss_pred CChHHHHHHHHHH
Confidence 8888888887777
No 5
>PRK09687 putative lyase; Provisional
Probab=98.35 E-value=2.2e-05 Score=87.59 Aligned_cols=188 Identities=15% Similarity=0.073 Sum_probs=132.0
Q ss_pred HHHHHHHHHHHhccCCcchhHhHHHHHHHHHhcCCCCCcCCHHHHHHHHHHHHHHhCCCChhHHHHHHHHHhcccCCCC-
Q 001827 78 LEDFLKFLLVAAMAANKTARFRACQIISEIIMRLPDDTEVSDEVWDEVIECMKVKVGDKVSVIRTFAVRSLSRFVNDSD- 156 (1009)
Q Consensus 78 ~~~ll~~Ll~~~~akdk~VR~R~cqli~~ll~~l~~~~~idedl~~~l~~~ll~Rl~DK~~~VR~qAv~aL~rlQ~~~~- 156 (1009)
-..-+++|...+...|..||++++..+.. +| +++.+..+.. -++|.+|.||..|+.+|+.|+..+.
T Consensus 21 ~~~~~~~L~~~L~d~d~~vR~~A~~aL~~----~~-----~~~~~~~l~~----ll~~~d~~vR~~A~~aLg~lg~~~~~ 87 (280)
T PRK09687 21 KKLNDDELFRLLDDHNSLKRISSIRVLQL----RG-----GQDVFRLAIE----LCSSKNPIERDIGADILSQLGMAKRC 87 (280)
T ss_pred hhccHHHHHHHHhCCCHHHHHHHHHHHHh----cC-----cchHHHHHHH----HHhCCCHHHHHHHHHHHHhcCCCccc
Confidence 44456677777799999999998887654 45 3455555544 3689999999999999999964332
Q ss_pred ChHHHHHHHHhcCCCCCHHHHHHHHhhCCCC--------cccHHHHHHhhCCCChHHHHHHHHHHhccCCCCCCCHHHHH
Q 001827 157 NSDILDLLLEVLPLEQNADVRKTIVLSLPPS--------NATSQAIIDCTLDVSESVRKAAYCVLANKFPLQSLSIKHRT 228 (1009)
Q Consensus 157 d~~v~~~ll~~l~~D~s~eVRraaL~~i~~~--------~~tl~~il~R~rDv~~~VRr~ay~~L~~~v~~~~lsi~qR~ 228 (1009)
...+...|..++.+|++++||+.++..+.-. +..+..+..-+.|-+..||+.+-..|+ ++. -.+-+
T Consensus 88 ~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg-~~~-----~~~ai 161 (280)
T PRK09687 88 QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLYSPKIVEQSQITAFDKSTNVRFAVAFALS-VIN-----DEAAI 161 (280)
T ss_pred hHHHHHHHHHHHhcCCCHHHHHHHHHHHhcccccccccchHHHHHHHHHhhCCCHHHHHHHHHHHh-ccC-----CHHHH
Confidence 2457788887878999999999999887643 223566667789999999999999998 332 23445
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHHHhhhcCCCH-HHHhhhcCcccchHHHHHHHHHHHh
Q 001827 229 MILKRGLADRSEAVSKECLKLMKDHWLAKHCNGNP-IELLKYLDVETYELVGESVMAALLK 288 (1009)
Q Consensus 229 ~LL~~GL~Dr~~~Vr~a~~~~L~~~Wl~~~~~gdi-~~LL~~LDV~~~~~~ae~~L~~lf~ 288 (1009)
..|...|+|.++.||..+..-| ..+ . .-.... ..|+..|+= .++.+-..++..|=+
T Consensus 162 ~~L~~~L~d~~~~VR~~A~~aL-g~~-~-~~~~~~~~~L~~~L~D-~~~~VR~~A~~aLg~ 218 (280)
T PRK09687 162 PLLINLLKDPNGDVRNWAAFAL-NSN-K-YDNPDIREAFVAMLQD-KNEEIRIEAIIGLAL 218 (280)
T ss_pred HHHHHHhcCCCHHHHHHHHHHH-hcC-C-CCCHHHHHHHHHHhcC-CChHHHHHHHHHHHc
Confidence 6666699999999999999888 343 2 111122 334455542 244566555555544
No 6
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=98.16 E-value=0.007 Score=72.82 Aligned_cols=233 Identities=17% Similarity=0.155 Sum_probs=150.1
Q ss_pred HHHHHHHHHhhhhhhhHHHHHHHHHHHhhCCChhhHHHHHHHhhhhhhccccCchhhHHHHHHHHHHHhhcchHHHHHHH
Q 001827 3 VIAKILDESRTSYATHNRKLKDLRAVRSKSPSTAQFSSAFFKTLTPLFTVQRRTASAERVVRFVSAFAATNNDEFLEDFL 82 (1009)
Q Consensus 3 ~I~~iF~~aQ~s~~~H~k~~~~L~~l~~~~~~~~~F~~~F~~~l~~iL~~~k~~~~~dRvikFva~f~~~~~~~f~~~ll 82 (1009)
.+.+++++.+. +..+..+.++++..-...+..+...|..++..+- -.+....|+.-....-+...+++.+--.+
T Consensus 8 el~~~~~~~~~---~~~~~~~~l~kli~~~~~G~~~~~~~~~vi~l~~---s~~~~~Krl~yl~l~~~~~~~~~~~~l~~ 81 (526)
T PF01602_consen 8 ELAKILNSFKI---DISKKKEALKKLIYLMMLGYDISFLFMEVIKLIS---SKDLELKRLGYLYLSLYLHEDPELLILII 81 (526)
T ss_dssp HHHHHHHCSST---HHHHHHHHHHHHHHHHHTT---GSTHHHHHCTCS---SSSHHHHHHHHHHHHHHTTTSHHHHHHHH
T ss_pred HHHHHHhcCCC---CHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHhC---CCCHHHHHHHHHHHHHHhhcchhHHHHHH
Confidence 46677777762 3333444444442211111233344444443322 34455677665554544445666666688
Q ss_pred HHHHHHhccCCcchhHhHHHHHHHHHhcCCCCCcCCHHHHHHHHHHHHHHhCCCChhHHHHHHHHHhccc-CCCCC-hH-
Q 001827 83 KFLLVAAMAANKTARFRACQIISEIIMRLPDDTEVSDEVWDEVIECMKVKVGDKVSVIRTFAVRSLSRFV-NDSDN-SD- 159 (1009)
Q Consensus 83 ~~Ll~~~~akdk~VR~R~cqli~~ll~~l~~~~~idedl~~~l~~~ll~Rl~DK~~~VR~qAv~aL~rlQ-~~~~d-~~- 159 (1009)
+.+.+-..++|..+|-.+.+.++.+. +.++.+.+...+..-+.|+.|.||..|+.|+.++- .+++. .+
T Consensus 82 n~l~kdl~~~n~~~~~lAL~~l~~i~---------~~~~~~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~~~~~ 152 (526)
T PF01602_consen 82 NSLQKDLNSPNPYIRGLALRTLSNIR---------TPEMAEPLIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDLVEDE 152 (526)
T ss_dssp HHHHHHHCSSSHHHHHHHHHHHHHH----------SHHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCCHHGG
T ss_pred HHHHHhhcCCCHHHHHHHHhhhhhhc---------ccchhhHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHHHHHH
Confidence 88999999999999999999998864 45677777777777789999999999999999985 33332 23
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHhhCC-C---Cc---ccHHHHHHhh----CCCChHHHHHHHHHHhccCCCCCCCH--HH
Q 001827 160 ILDLLLEVLPLEQNADVRKTIVLSLP-P---SN---ATSQAIIDCT----LDVSESVRKAAYCVLANKFPLQSLSI--KH 226 (1009)
Q Consensus 160 v~~~ll~~l~~D~s~eVRraaL~~i~-~---~~---~tl~~il~R~----rDv~~~VRr~ay~~L~~~v~~~~lsi--~q 226 (1009)
+++.+..+| .|+++.|+.+|+.-+. + .. ..++.++.++ .+-++-++..+.+.|..-.+...-.. ..
T Consensus 153 ~~~~l~~lL-~d~~~~V~~~a~~~l~~i~~~~~~~~~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~~~~~ 231 (526)
T PF01602_consen 153 LIPKLKQLL-SDKDPSVVSAALSLLSEIKCNDDSYKSLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPEDADKNR 231 (526)
T ss_dssp HHHHHHHHT-THSSHHHHHHHHHHHHHHHCTHHHHTTHHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHHHHHH
T ss_pred HHHHHhhhc-cCCcchhHHHHHHHHHHHccCcchhhhhHHHHHHHhhhcccccchHHHHHHHHHHHhcccCChhhhhHHH
Confidence 688888888 7999999999985542 1 11 3345555443 68888888888888774333222212 23
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHHH
Q 001827 227 RTMILKRGLADRSEAVSKECLKLMK 251 (1009)
Q Consensus 227 R~~LL~~GL~Dr~~~Vr~a~~~~L~ 251 (1009)
-...+..-|...+++|.-+|.+.+.
T Consensus 232 ~i~~l~~~l~s~~~~V~~e~~~~i~ 256 (526)
T PF01602_consen 232 IIEPLLNLLQSSSPSVVYEAIRLII 256 (526)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhccccHHHHHHHHHHH
Confidence 3555555666778888888888874
No 7
>PTZ00429 beta-adaptin; Provisional
Probab=97.98 E-value=0.027 Score=70.74 Aligned_cols=126 Identities=14% Similarity=0.142 Sum_probs=90.9
Q ss_pred HHHHHHHHhccCCcchhHhHHHHHHHHHhcCCCCCcCCHHHHHHHHHHHHHHhCCCChhHHHHHHHHHhcccCCCCChHH
Q 001827 81 FLKFLLVAAMAANKTARFRACQIISEIIMRLPDDTEVSDEVWDEVIECMKVKVGDKVSVIRTFAVRSLSRFVNDSDNSDI 160 (1009)
Q Consensus 81 ll~~Ll~~~~akdk~VR~R~cqli~~ll~~l~~~~~idedl~~~l~~~ll~Rl~DK~~~VR~qAv~aL~rlQ~~~~d~~v 160 (1009)
++-.+++.+.++|..+|- ++-.-+.+.. ....|+.-.....+.+=+.|++|.||.-|++.|+.+..+.--+.+
T Consensus 69 LF~dVvk~~~S~d~elKK----LvYLYL~~ya---~~~pelalLaINtl~KDl~d~Np~IRaLALRtLs~Ir~~~i~e~l 141 (746)
T PTZ00429 69 LFVDVVKLAPSTDLELKK----LVYLYVLSTA---RLQPEKALLAVNTFLQDTTNSSPVVRALAVRTMMCIRVSSVLEYT 141 (746)
T ss_pred HHHHHHHHhCCCCHHHHH----HHHHHHHHHc---ccChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHcCCcHHHHHHH
Confidence 444555566776655553 3333333344 345666666788888899999999999999999999643222345
Q ss_pred HHHHHHhcCCCCCHHHHHHHHhhCCC----Cc------ccHHHHHHhhCCCChHHHHHHHHHHh
Q 001827 161 LDLLLEVLPLEQNADVRKTIVLSLPP----SN------ATSQAIIDCTLDVSESVRKAAYCVLA 214 (1009)
Q Consensus 161 ~~~ll~~l~~D~s~eVRraaL~~i~~----~~------~tl~~il~R~rDv~~~VRr~ay~~L~ 214 (1009)
...+..++ .|++|-|||+|+.++.. ++ +-++.+.+-+.|.++.|-..|...|.
T Consensus 142 ~~~lkk~L-~D~~pYVRKtAalai~Kly~~~pelv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~ 204 (746)
T PTZ00429 142 LEPLRRAV-ADPDPYVRKTAAMGLGKLFHDDMQLFYQQDFKKDLVELLNDNNPVVASNAAAIVC 204 (746)
T ss_pred HHHHHHHh-cCCCHHHHHHHHHHHHHHHhhCcccccccchHHHHHHHhcCCCccHHHHHHHHHH
Confidence 56667777 59999999999988753 22 34678888889999999999998776
No 8
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=97.80 E-value=0.00029 Score=90.53 Aligned_cols=173 Identities=17% Similarity=0.159 Sum_probs=121.6
Q ss_pred HHHHHhccCCcchhHhHHHHHHHHHhcCCCCCcCCHHHHHHHHHHHHHHhCCCChhHHHHHHHHHhcccCCCCChHHHHH
Q 001827 84 FLLVAAMAANKTARFRACQIISEIIMRLPDDTEVSDEVWDEVIECMKVKVGDKVSVIRTFAVRSLSRFVNDSDNSDILDL 163 (1009)
Q Consensus 84 ~Ll~~~~akdk~VR~R~cqli~~ll~~l~~~~~idedl~~~l~~~ll~Rl~DK~~~VR~qAv~aL~rlQ~~~~d~~v~~~ 163 (1009)
.|+..+..+|-.||..+++-|..+ +. ...++..+.|.++.||..|+.+|+.+.+. +...+..
T Consensus 718 ~l~~~L~D~d~~VR~~Av~aL~~~----~~------------~~~l~~~l~D~~~~VR~~aa~aL~~~~~~--~~~~~~~ 779 (897)
T PRK13800 718 LFAAALGDPDHRVRIEAVRALVSV----DD------------VESVAGAATDENREVRIAVAKGLATLGAG--GAPAGDA 779 (897)
T ss_pred HHHHHhcCCCHHHHHHHHHHHhcc----cC------------cHHHHHHhcCCCHHHHHHHHHHHHHhccc--cchhHHH
Confidence 456677899999999988887763 21 12356779999999999999999998532 2223556
Q ss_pred HHHhcCCCCCHHHHHHHHhhCCCCc--cc-HHHHHHhhCCCChHHHHHHHHHHhccCCCCCCCHHHHHHHHHHhhcCCCH
Q 001827 164 LLEVLPLEQNADVRKTIVLSLPPSN--AT-SQAIIDCTLDVSESVRKAAYCVLANKFPLQSLSIKHRTMILKRGLADRSE 240 (1009)
Q Consensus 164 ll~~l~~D~s~eVRraaL~~i~~~~--~t-l~~il~R~rDv~~~VRr~ay~~L~~~v~~~~lsi~qR~~LL~~GL~Dr~~ 240 (1009)
|+.++ .|+.++||.+++..|.... .. .+.++.-+.|-+..||+.|-..|+. +...+....|-..|.|.+.
T Consensus 780 L~~ll-~D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d~d~~VR~~Aa~aL~~------l~~~~a~~~L~~~L~D~~~ 852 (897)
T PRK13800 780 VRALT-GDPDPLVRAAALAALAELGCPPDDVAAATAALRASAWQVRQGAARALAG------AAADVAVPALVEALTDPHL 852 (897)
T ss_pred HHHHh-cCCCHHHHHHHHHHHHhcCCcchhHHHHHHHhcCCChHHHHHHHHHHHh------ccccchHHHHHHHhcCCCH
Confidence 66666 5889999999998886432 22 3567777789999999999999982 3335566777779999999
Q ss_pred HHHHHHHHHHHHHHHhhhcCCCHHHHh-hhcCcccchHHHHHHHHHH
Q 001827 241 AVSKECLKLMKDHWLAKHCNGNPIELL-KYLDVETYELVGESVMAAL 286 (1009)
Q Consensus 241 ~Vr~a~~~~L~~~Wl~~~~~gdi~~LL-~~LDV~~~~~~ae~~L~~l 286 (1009)
.||.++...|. .|- -..+....| ..|+ ..++.+...+.++|
T Consensus 853 ~VR~~A~~aL~-~~~---~~~~a~~~L~~al~-D~d~~Vr~~A~~aL 894 (897)
T PRK13800 853 DVRKAAVLALT-RWP---GDPAARDALTTALT-DSDADVRAYARRAL 894 (897)
T ss_pred HHHHHHHHHHh-ccC---CCHHHHHHHHHHHh-CCCHHHHHHHHHHH
Confidence 99999999984 671 112233333 4454 44556666555554
No 9
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=97.77 E-value=0.00051 Score=88.39 Aligned_cols=178 Identities=16% Similarity=0.089 Sum_probs=125.6
Q ss_pred HHHHHHHhccCCcchhHhHHHHHHHHHhcCCCCCcCCHHHHHHHHHHHHHHhCCCChhHHHHHHHHHhcccCCCCChHHH
Q 001827 82 LKFLLVAAMAANKTARFRACQIISEIIMRLPDDTEVSDEVWDEVIECMKVKVGDKVSVIRTFAVRSLSRFVNDSDNSDIL 161 (1009)
Q Consensus 82 l~~Ll~~~~akdk~VR~R~cqli~~ll~~l~~~~~idedl~~~l~~~ll~Rl~DK~~~VR~qAv~aL~rlQ~~~~d~~v~ 161 (1009)
+..|+..+...|..||..+++.|..+ + +++ ....|...|.|.++.||..|+.+|.++...... .
T Consensus 623 ~~~L~~~L~D~d~~VR~~Av~~L~~~----~-----~~~----~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~~---~ 686 (897)
T PRK13800 623 VAELAPYLADPDPGVRRTAVAVLTET----T-----PPG----FGPALVAALGDGAAAVRRAAAEGLRELVEVLPP---A 686 (897)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHhhh----c-----chh----HHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCc---h
Confidence 46788888999999999999998874 2 222 345556668999999999999999999422222 2
Q ss_pred HHHHHhcCCCCCHHHHHHHHhhCCCC-cccHHHHHHhhCCCChHHHHHHHHHHhccCCCCCCCHHHHHHHHHHhhcCCCH
Q 001827 162 DLLLEVLPLEQNADVRKTIVLSLPPS-NATSQAIIDCTLDVSESVRKAAYCVLANKFPLQSLSIKHRTMILKRGLADRSE 240 (1009)
Q Consensus 162 ~~ll~~l~~D~s~eVRraaL~~i~~~-~~tl~~il~R~rDv~~~VRr~ay~~L~~~v~~~~lsi~qR~~LL~~GL~Dr~~ 240 (1009)
..++..|. |+++.||.+++..|... ......++..+.|.++.||..|...|+. ++- ...|...|+|.++
T Consensus 687 ~~L~~~L~-~~d~~VR~~A~~aL~~~~~~~~~~l~~~L~D~d~~VR~~Av~aL~~-~~~--------~~~l~~~l~D~~~ 756 (897)
T PRK13800 687 PALRDHLG-SPDPVVRAAALDVLRALRAGDAALFAAALGDPDHRVRIEAVRALVS-VDD--------VESVAGAATDENR 756 (897)
T ss_pred HHHHHHhc-CCCHHHHHHHHHHHHhhccCCHHHHHHHhcCCCHHHHHHHHHHHhc-ccC--------cHHHHHHhcCCCH
Confidence 45556674 79999999999887643 3345677888999999999999999994 321 1224458999999
Q ss_pred HHHHHHHHHHHHHHHhhhcCC-CHHHHhhhcCcccchHHHHHHHHHHHhh
Q 001827 241 AVSKECLKLMKDHWLAKHCNG-NPIELLKYLDVETYELVGESVMAALLKE 289 (1009)
Q Consensus 241 ~Vr~a~~~~L~~~Wl~~~~~g-di~~LL~~LDV~~~~~~ae~~L~~lf~~ 289 (1009)
.||.++.+.|. ++.. ... .+..|+..++=. ++.+-..++.+|=+.
T Consensus 757 ~VR~~aa~aL~--~~~~-~~~~~~~~L~~ll~D~-d~~VR~aA~~aLg~~ 802 (897)
T PRK13800 757 EVRIAVAKGLA--TLGA-GGAPAGDAVRALTGDP-DPLVRAAALAALAEL 802 (897)
T ss_pred HHHHHHHHHHH--Hhcc-ccchhHHHHHHHhcCC-CHHHHHHHHHHHHhc
Confidence 99999999884 4431 111 133455555432 356666666665443
No 10
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.69 E-value=0.00018 Score=65.05 Aligned_cols=85 Identities=21% Similarity=0.287 Sum_probs=52.6
Q ss_pred HHHHHHh-ccCCcchhHhHHHHHHHHHhcCCCCCcCCHHHHHHHHHHHHHHhCCCChhHHHHHHHHHhcccCCCCChHHH
Q 001827 83 KFLLVAA-MAANKTARFRACQIISEIIMRLPDDTEVSDEVWDEVIECMKVKVGDKVSVIRTFAVRSLSRFVNDSDNSDIL 161 (1009)
Q Consensus 83 ~~Ll~~~-~akdk~VR~R~cqli~~ll~~l~~~~~idedl~~~l~~~ll~Rl~DK~~~VR~qAv~aL~rlQ~~~~d~~v~ 161 (1009)
..|++.+ +.++..||..++..++ .++ ++ .+...+...+.|++|.||.+|+.+|+++. +...+
T Consensus 2 ~~L~~~l~~~~~~~vr~~a~~~L~----~~~-----~~----~~~~~L~~~l~d~~~~vr~~a~~aL~~i~----~~~~~ 64 (88)
T PF13646_consen 2 PALLQLLQNDPDPQVRAEAARALG----ELG-----DP----EAIPALIELLKDEDPMVRRAAARALGRIG----DPEAI 64 (88)
T ss_dssp HHHHHHHHTSSSHHHHHHHHHHHH----CCT-----HH----HHHHHHHHHHTSSSHHHHHHHHHHHHCCH----HHHTH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHH----HcC-----CH----hHHHHHHHHHcCCCHHHHHHHHHHHHHhC----CHHHH
Confidence 3455544 6777777777776666 232 22 33444555567777777777777777774 23466
Q ss_pred HHHHHhcCCCCCHHHHHHHHhhC
Q 001827 162 DLLLEVLPLEQNADVRKTIVLSL 184 (1009)
Q Consensus 162 ~~ll~~l~~D~s~eVRraaL~~i 184 (1009)
..|..++..|++..||.+++..|
T Consensus 65 ~~L~~~l~~~~~~~vr~~a~~aL 87 (88)
T PF13646_consen 65 PALIKLLQDDDDEVVREAAAEAL 87 (88)
T ss_dssp HHHHHHHTC-SSHHHHHHHHHHH
T ss_pred HHHHHHHcCCCcHHHHHHHHhhc
Confidence 67777777777777777776543
No 11
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.51 E-value=0.00042 Score=62.69 Aligned_cols=83 Identities=24% Similarity=0.291 Sum_probs=64.3
Q ss_pred HHHHHHh-CCCChhHHHHHHHHHhcccCCCCChHHHHHHHHhcCCCCCHHHHHHHHhhCCC--CcccHHHHHHhhCC-CC
Q 001827 127 ECMKVKV-GDKVSVIRTFAVRSLSRFVNDSDNSDILDLLLEVLPLEQNADVRKTIVLSLPP--SNATSQAIIDCTLD-VS 202 (1009)
Q Consensus 127 ~~ll~Rl-~DK~~~VR~qAv~aL~rlQ~~~~d~~v~~~ll~~l~~D~s~eVRraaL~~i~~--~~~tl~~il~R~rD-v~ 202 (1009)
+.|++.+ .|+++.||..|+.+|+++. +..++..|+.++ .|+++.||++++..|.. ++..++.+.+.+.| -+
T Consensus 2 ~~L~~~l~~~~~~~vr~~a~~~L~~~~----~~~~~~~L~~~l-~d~~~~vr~~a~~aL~~i~~~~~~~~L~~~l~~~~~ 76 (88)
T PF13646_consen 2 PALLQLLQNDPDPQVRAEAARALGELG----DPEAIPALIELL-KDEDPMVRRAAARALGRIGDPEAIPALIKLLQDDDD 76 (88)
T ss_dssp HHHHHHHHTSSSHHHHHHHHHHHHCCT----HHHHHHHHHHHH-TSSSHHHHHHHHHHHHCCHHHHTHHHHHHHHTC-SS
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHcC----CHhHHHHHHHHH-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCc
Confidence 4566777 8999999999999999774 336788888888 68999999999887764 35678888887865 45
Q ss_pred hHHHHHHHHHHh
Q 001827 203 ESVRKAAYCVLA 214 (1009)
Q Consensus 203 ~~VRr~ay~~L~ 214 (1009)
..||..+...|+
T Consensus 77 ~~vr~~a~~aL~ 88 (88)
T PF13646_consen 77 EVVREAAAEALG 88 (88)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHhhcC
Confidence 667888877664
No 12
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.38 E-value=0.004 Score=74.60 Aligned_cols=175 Identities=21% Similarity=0.246 Sum_probs=124.5
Q ss_pred hHHHHHHHhhhhhhccccCchhhHHHHHHHHHHHhhc-----chHHHHHHHH-HHHHHhccCCcchhHhHHHHHHHHHhc
Q 001827 37 QFSSAFFKTLTPLFTVQRRTASAERVVRFVSAFAATN-----NDEFLEDFLK-FLLVAAMAANKTARFRACQIISEIIMR 110 (1009)
Q Consensus 37 ~F~~~F~~~l~~iL~~~k~~~~~dRvikFva~f~~~~-----~~~f~~~ll~-~Ll~~~~akdk~VR~R~cqli~~ll~~ 110 (1009)
.|...|+. +.+-.. +.|....+=+-++.|.... -++.+..|.+ -|-++..+.|..||..+..+.-...--
T Consensus 129 d~iq~~~~---haiha~-rsp~~sk~r~Vl~~F~hqkk~~qgVeeml~rL~~p~l~R~L~a~Ns~VrsnAa~lf~~~fP~ 204 (1005)
T KOG1949|consen 129 DCIQDFMF---HAIHAP-RSPVHSKVREVLSYFHHQKKVRQGVEEMLYRLYKPILWRGLKARNSEVRSNAALLFVEAFPI 204 (1005)
T ss_pred hHHHHHHH---HHhcCC-CChHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhHHHHHhhccCchhhhhhHHHHHHHhccC
Confidence 45555543 333333 3566666677777887643 3566777766 456899999999999999887776655
Q ss_pred CCCCC--cCCHHHHHHHHHHHHHHhCCCChhHHHHHHHHHhcccC-----CCCC--hHHHHHHHHhcCCCCCHHHHHHHH
Q 001827 111 LPDDT--EVSDEVWDEVIECMKVKVGDKVSVIRTFAVRSLSRFVN-----DSDN--SDILDLLLEVLPLEQNADVRKTIV 181 (1009)
Q Consensus 111 l~~~~--~idedl~~~l~~~ll~Rl~DK~~~VR~qAv~aL~rlQ~-----~~~d--~~v~~~ll~~l~~D~s~eVRraaL 181 (1009)
.++++ +==|.+.++=..-|.+-|.|-.|.||..|+.+++|.-. -|.+ -++.....+-|.+|++.+||.++.
T Consensus 205 ~dpd~~~e~mD~i~~kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~fWe~iP~~i~~~ll~kI~d~~a~dt~s~VR~svf 284 (1005)
T KOG1949|consen 205 RDPDLHAEEMDSIIQKQFEELYSLLEDPYPMVRSTAILGVCKITSKFWEMIPPTILIDLLKKITDELAFDTSSDVRCSVF 284 (1005)
T ss_pred CCCCccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHhhhccchheehhHh
Confidence 55543 21223556666778888999999999999999999741 2222 245566778889999999999999
Q ss_pred hhCCC---Cc---ccHHHHHHhh----CCCChHHHHHHHHHHhc
Q 001827 182 LSLPP---SN---ATSQAIIDCT----LDVSESVRKAAYCVLAN 215 (1009)
Q Consensus 182 ~~i~~---~~---~tl~~il~R~----rDv~~~VRr~ay~~L~~ 215 (1009)
..|+. ++ .-+.++|.|+ .|..+.||-++|+-|..
T Consensus 285 ~gl~~~l~np~sh~~le~~Lpal~~~l~D~se~VRvA~vd~ll~ 328 (1005)
T KOG1949|consen 285 KGLPMILDNPLSHPLLEQLLPALRYSLHDNSEKVRVAFVDMLLK 328 (1005)
T ss_pred cCcHHHHcCccchhHHHHHHHhcchhhhccchhHHHHHHHHHHH
Confidence 88753 33 3456677766 59999999999998773
No 13
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=97.37 E-value=0.41 Score=57.69 Aligned_cols=221 Identities=19% Similarity=0.178 Sum_probs=143.3
Q ss_pred hhhHHHHHHHHHHHhhcchHHHHHHHHHHHHHhccCCcchhHhHHHHHHHHHhcCCCCCcCCHHHHHHHHHHHHHHhCCC
Q 001827 57 ASAERVVRFVSAFAATNNDEFLEDFLKFLLVAAMAANKTARFRACQIISEIIMRLPDDTEVSDEVWDEVIECMKVKVGDK 136 (1009)
Q Consensus 57 ~~~dRvikFva~f~~~~~~~f~~~ll~~Ll~~~~akdk~VR~R~cqli~~ll~~l~~~~~idedl~~~l~~~ll~Rl~DK 136 (1009)
...-..+++++.+. +.++...++..+.+...+++..||-.++-.+..+...-|+ .+... +...+...+.|+
T Consensus 94 ~~~~lAL~~l~~i~---~~~~~~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~--~~~~~----~~~~l~~lL~d~ 164 (526)
T PF01602_consen 94 YIRGLALRTLSNIR---TPEMAEPLIPDVIKLLSDPSPYVRKKAALALLKIYRKDPD--LVEDE----LIPKLKQLLSDK 164 (526)
T ss_dssp HHHHHHHHHHHHH----SHHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHC--CHHGG----HHHHHHHHTTHS
T ss_pred HHHHHHHhhhhhhc---ccchhhHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCHH--HHHHH----HHHHHhhhccCC
Confidence 34566677777775 5678889999999999999999999999999999988664 22222 345555667999
Q ss_pred ChhHHHHHHHHHhcc-cCCCCChHHHHHHHHhcC---CCCCHHHHHHHHhhCC---CC-------cccHHHHHHhhCCCC
Q 001827 137 VSVIRTFAVRSLSRF-VNDSDNSDILDLLLEVLP---LEQNADVRKTIVLSLP---PS-------NATSQAIIDCTLDVS 202 (1009)
Q Consensus 137 ~~~VR~qAv~aL~rl-Q~~~~d~~v~~~ll~~l~---~D~s~eVRraaL~~i~---~~-------~~tl~~il~R~rDv~ 202 (1009)
.|.|+..|+.++..+ .+++...+.+..+...|. .++++-++..++..+. +. ...++.+...+...+
T Consensus 165 ~~~V~~~a~~~l~~i~~~~~~~~~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~~~~~~i~~l~~~l~s~~ 244 (526)
T PF01602_consen 165 DPSVVSAALSLLSEIKCNDDSYKSLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPEDADKNRIIEPLLNLLQSSS 244 (526)
T ss_dssp SHHHHHHHHHHHHHHHCTHHHHTTHHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHccCcchhhhhHHHHHHHhhhcccccchHHHHHHHHHHHhcccCChhhhhHHHHHHHHHHHhhccc
Confidence 999999999999999 322221133333333333 7899999999887654 32 125677777778888
Q ss_pred hHHHHHHHHHHhccCCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhhh---cCCCHHHHhhhcCcccchHHH
Q 001827 203 ESVRKAAYCVLANKFPLQSLSIKHRTMILKRGLADRSEAVSKECLKLMKDHWLAKH---CNGNPIELLKYLDVETYELVG 279 (1009)
Q Consensus 203 ~~VRr~ay~~L~~~v~~~~lsi~qR~~LL~~GL~Dr~~~Vr~a~~~~L~~~Wl~~~---~~gdi~~LL~~LDV~~~~~~a 279 (1009)
+.|+-.+...+. .++...-....-...|..=|.++++.||-.+.+.|. .-.... .. +..-.+..+.-..+..+.
T Consensus 245 ~~V~~e~~~~i~-~l~~~~~~~~~~~~~L~~lL~s~~~nvr~~~L~~L~-~l~~~~~~~v~-~~~~~~~~l~~~~d~~Ir 321 (526)
T PF01602_consen 245 PSVVYEAIRLII-KLSPSPELLQKAINPLIKLLSSSDPNVRYIALDSLS-QLAQSNPPAVF-NQSLILFFLLYDDDPSIR 321 (526)
T ss_dssp HHHHHHHHHHHH-HHSSSHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHH-HHCCHCHHHHG-THHHHHHHHHCSSSHHHH
T ss_pred cHHHHHHHHHHH-HhhcchHHHHhhHHHHHHHhhcccchhehhHHHHHH-Hhhcccchhhh-hhhhhhheecCCCChhHH
Confidence 888888888776 332222223344555666788999999988776663 322211 01 111112222323344566
Q ss_pred HHHHHHHHhh
Q 001827 280 ESVMAALLKE 289 (1009)
Q Consensus 280 e~~L~~lf~~ 289 (1009)
..+++.++..
T Consensus 322 ~~~l~lL~~l 331 (526)
T PF01602_consen 322 KKALDLLYKL 331 (526)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHhhc
Confidence 6666666654
No 14
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.28 E-value=1.3 Score=58.13 Aligned_cols=138 Identities=20% Similarity=0.260 Sum_probs=105.0
Q ss_pred HHHHHHHHHHHHhCCCChhHHHHHHHHHhcccCCCC----ChHHHHHHHHhcCCCCCHHHHHHHHhhCCC----C----c
Q 001827 121 VWDEVIECMKVKVGDKVSVIRTFAVRSLSRFVNDSD----NSDILDLLLEVLPLEQNADVRKTIVLSLPP----S----N 188 (1009)
Q Consensus 121 l~~~l~~~ll~Rl~DK~~~VR~qAv~aL~rlQ~~~~----d~~v~~~ll~~l~~D~s~eVRraaL~~i~~----~----~ 188 (1009)
.||...+.++.=+....++||..|..||+-+-.-+. +.++-...-.-+ +|+|+.||-|||.=+.. . .
T Consensus 813 sfD~yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL~~~dvq~~Vh~R~-~DssasVREAaldLvGrfvl~~~e~~~ 891 (1692)
T KOG1020|consen 813 SFDPYLKLILSVLGENAIALRTKALKCLSMIVEADPSVLSRPDVQEAVHGRL-NDSSASVREAALDLVGRFVLSIPELIF 891 (1692)
T ss_pred hhHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhcChHhhcCHHHHHHHHHhh-ccchhHHHHHHHHHHhhhhhccHHHHH
Confidence 455666666666778889999999999999963321 445666666667 69999999999965542 2 4
Q ss_pred ccHHHHHHhhCCCChHHHHHHHHHHhc---cCCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhhhcCC
Q 001827 189 ATSQAIIDCTLDVSESVRKAAYCVLAN---KFPLQSLSIKHRTMILKRGLADRSEAVSKECLKLMKDHWLAKHCNG 261 (1009)
Q Consensus 189 ~tl~~il~R~rDv~~~VRr~ay~~L~~---~v~~~~lsi~qR~~LL~~GL~Dr~~~Vr~a~~~~L~~~Wl~~~~~g 261 (1009)
..+..|.+|..|..-.|||-|...+.+ ..|--..-.+.-.++|+ -.+|-+.+|++-+.+.+..-||.. +.+
T Consensus 892 qyY~~i~erIlDtgvsVRKRvIKIlrdic~e~pdf~~i~~~cakmlr-Rv~DEEg~I~kLv~etf~klWF~p-~~~ 965 (1692)
T KOG1020|consen 892 QYYDQIIERILDTGVSVRKRVIKILRDICEETPDFSKIVDMCAKMLR-RVNDEEGNIKKLVRETFLKLWFTP-VPE 965 (1692)
T ss_pred HHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCChhhHHHHHHHHHH-HhccchhHHHHHHHHHHHHHhccC-CCc
Confidence 567889999999999999999998874 22322233455667787 789988889999999999999984 443
No 15
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=97.16 E-value=0.011 Score=67.12 Aligned_cols=183 Identities=20% Similarity=0.177 Sum_probs=129.0
Q ss_pred HHHHHHHHHhccCCcchhHhHHHHHHHHHhcCCCCCcCCHHHHHHHHHHHHHHhCCCChhHHHHHHHHHhcccCCCCChH
Q 001827 80 DFLKFLLVAAMAANKTARFRACQIISEIIMRLPDDTEVSDEVWDEVIECMKVKVGDKVSVIRTFAVRSLSRFVNDSDNSD 159 (1009)
Q Consensus 80 ~ll~~Ll~~~~akdk~VR~R~cqli~~ll~~l~~~~~idedl~~~l~~~ll~Rl~DK~~~VR~qAv~aL~rlQ~~~~d~~ 159 (1009)
..+..++..+.+++..||+++... +..++ ++ .....+...+.|..+.||.+|+.+|+.+. +..
T Consensus 43 ~~~~~~~~~l~~~~~~vr~~aa~~----l~~~~-----~~----~av~~l~~~l~d~~~~vr~~a~~aLg~~~----~~~ 105 (335)
T COG1413 43 EAADELLKLLEDEDLLVRLSAAVA----LGELG-----SE----EAVPLLRELLSDEDPRVRDAAADALGELG----DPE 105 (335)
T ss_pred hhHHHHHHHHcCCCHHHHHHHHHH----Hhhhc-----hH----HHHHHHHHHhcCCCHHHHHHHHHHHHccC----Chh
Confidence 457788888899999999998877 22333 12 23556677799999999999999999995 235
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHhhCCC--CcccHHHHHHhhCCCC----------h--HHHHHHHHHHhccCCCCCCCHH
Q 001827 160 ILDLLLEVLPLEQNADVRKTIVLSLPP--SNATSQAIIDCTLDVS----------E--SVRKAAYCVLANKFPLQSLSIK 225 (1009)
Q Consensus 160 v~~~ll~~l~~D~s~eVRraaL~~i~~--~~~tl~~il~R~rDv~----------~--~VRr~ay~~L~~~v~~~~lsi~ 225 (1009)
.+..|+..+.+|++.-||..+...+.. ++..+..+++-+.|.. + .+|..+-..|++-.+ .
T Consensus 106 a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~~a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~~~l~~~~~------~ 179 (335)
T COG1413 106 AVPPLVELLENDENEGVRAAAARALGKLGDERALDPLLEALQDEDSGSAAAALDAALLDVRAAAAEALGELGD------P 179 (335)
T ss_pred HHHHHHHHHHcCCcHhHHHHHHHHHHhcCchhhhHHHHHHhccchhhhhhhhccchHHHHHHHHHHHHHHcCC------h
Confidence 677788888889999999999999864 4556888888888866 2 589988888883222 2
Q ss_pred HHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhhhcCCCH-HHHhhhcCcccchHHHHHHHHHHHhh
Q 001827 226 HRTMILKRGLADRSEAVSKECLKLMKDHWLAKHCNGNP-IELLKYLDVETYELVGESVMAALLKE 289 (1009)
Q Consensus 226 qR~~LL~~GL~Dr~~~Vr~a~~~~L~~~Wl~~~~~gdi-~~LL~~LDV~~~~~~ae~~L~~lf~~ 289 (1009)
.-...+..++.|.+..||.++...| .|+. ..+..+ ..|...+.-. +..+...++..+-..
T Consensus 180 ~~~~~l~~~l~~~~~~vr~~Aa~aL--~~~~-~~~~~~~~~l~~~~~~~-~~~vr~~~~~~l~~~ 240 (335)
T COG1413 180 EAIPLLIELLEDEDADVRRAAASAL--GQLG-SENVEAADLLVKALSDE-SLEVRKAALLALGEI 240 (335)
T ss_pred hhhHHHHHHHhCchHHHHHHHHHHH--HHhh-cchhhHHHHHHHHhcCC-CHHHHHHHHHHhccc
Confidence 2345566799999999999999998 5664 221123 3333333322 234554555544443
No 16
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=97.14 E-value=0.0049 Score=66.14 Aligned_cols=168 Identities=20% Similarity=0.213 Sum_probs=98.8
Q ss_pred HHHHHHHHHhccCCcchhHhHHHHHHHHHhcCCCCCcCCHHHHHHHHHHHHHHhCCCChhHHHHHHHHHhcccCCCC-Ch
Q 001827 80 DFLKFLLVAAMAANKTARFRACQIISEIIMRLPDDTEVSDEVWDEVIECMKVKVGDKVSVIRTFAVRSLSRFVNDSD-NS 158 (1009)
Q Consensus 80 ~ll~~Ll~~~~akdk~VR~R~cqli~~ll~~l~~~~~idedl~~~l~~~ll~Rl~DK~~~VR~qAv~aL~rlQ~~~~-d~ 158 (1009)
.++..+.....+....|---+|+++..+...++. .++ ...+.+...|++++.|+...||..|..+|..+...-. ..
T Consensus 53 ~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~--~~~-~~~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~ 129 (228)
T PF12348_consen 53 QLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGS--HFE-PYADILLPPLLKKLGDSKKFIREAANNALDAIIESCSYSP 129 (228)
T ss_dssp ---HHHHH-S-HH---HHHHHHHHHHHHHHHHGG--GGH-HHHHHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H--
T ss_pred HhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhH--hHH-HHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHCCcHH
Confidence 3445666677777778888899999999999985 344 3478889999999999999999999999999875433 34
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHhhCCCCcccHHHHHHhhCCCChHHHHHHHHHHhccCCCCCCCHHHHHHHHHHhhcCC
Q 001827 159 DILDLLLEVLPLEQNADVRKTIVLSLPPSNATSQAIIDCTLDVSESVRKAAYCVLANKFPLQSLSIKHRTMILKRGLADR 238 (1009)
Q Consensus 159 ~v~~~ll~~l~~D~s~eVRraaL~~i~~~~~tl~~il~R~rDv~~~VRr~ay~~L~~~v~~~~lsi~qR~~LL~~GL~Dr 238 (1009)
.++..++.....+.|+.||..++..+. .++++..+..+...+. ....+-...|..|+.|.
T Consensus 130 ~~~~~~l~~~~~~Kn~~vR~~~~~~l~-------~~l~~~~~~~~~l~~~-------------~~~~~l~~~l~~~l~D~ 189 (228)
T PF12348_consen 130 KILLEILSQGLKSKNPQVREECAEWLA-------IILEKWGSDSSVLQKS-------------AFLKQLVKALVKLLSDA 189 (228)
T ss_dssp HHHHHHHHHHTT-S-HHHHHHHHHHHH-------HHHTT-----GGG--H-------------HHHHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHH-------HHHHHccchHhhhccc-------------chHHHHHHHHHHHCCCC
Confidence 564555555567999999999886543 2222222100100000 01255677888899999
Q ss_pred CHHHHHHHHHHHHHHHHhhhcCCCHHHHhhhcCc
Q 001827 239 SEAVSKECLKLMKDHWLAKHCNGNPIELLKYLDV 272 (1009)
Q Consensus 239 ~~~Vr~a~~~~L~~~Wl~~~~~gdi~~LL~~LDV 272 (1009)
++.||+++++++. .+.. .+...--.++..||.
T Consensus 190 ~~~VR~~Ar~~~~-~l~~-~~~~~a~~~~~~l~~ 221 (228)
T PF12348_consen 190 DPEVREAARECLW-ALYS-HFPERAESILSMLDP 221 (228)
T ss_dssp -HHHHHHHHHHHH-HHHH-HH-HHH---------
T ss_pred CHHHHHHHHHHHH-HHHH-HCCHhhccchhcchh
Confidence 9999999999984 6665 455455566666654
No 17
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=97.08 E-value=0.0043 Score=64.65 Aligned_cols=127 Identities=16% Similarity=0.293 Sum_probs=90.8
Q ss_pred CcchhHhHHHHHHHHHhcCCCCCcCCHHHHHHHHHHHHHHhCCCChhHHHHHHHHHhcccCCC--C-ChHHHHHHHHhcC
Q 001827 93 NKTARFRACQIISEIIMRLPDDTEVSDEVWDEVIECMKVKVGDKVSVIRTFAVRSLSRFVNDS--D-NSDILDLLLEVLP 169 (1009)
Q Consensus 93 dk~VR~R~cqli~~ll~~l~~~~~idedl~~~l~~~ll~Rl~DK~~~VR~qAv~aL~rlQ~~~--~-d~~v~~~ll~~l~ 169 (1009)
|..||-.++-.++.+.-..| .+.+.....+..+|+|++|.||.+|+.+|++|-..+ + .+.+...++.++
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~-------~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~k~~l~~~~l~~l- 72 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYP-------NLVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKVKGQLFSRILKLL- 72 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCc-------HHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceeehhhhhHHHHHHH-
Confidence 34678888888888777776 456677888899999999999999999999985322 2 234557777777
Q ss_pred CCCCHHHHHHHHhhCC---C--Cc----ccHHHHHHhhCC---------CChHHHHHHHHHHhccCCCCCCC-HHHHHHH
Q 001827 170 LEQNADVRKTIVLSLP---P--SN----ATSQAIIDCTLD---------VSESVRKAAYCVLANKFPLQSLS-IKHRTMI 230 (1009)
Q Consensus 170 ~D~s~eVRraaL~~i~---~--~~----~tl~~il~R~rD---------v~~~VRr~ay~~L~~~v~~~~ls-i~qR~~L 230 (1009)
.|++++||..|...+. . ++ ..++.++-++.+ .+..-|+.+|..|. ..++ .+|+..|
T Consensus 73 ~D~~~~Ir~~A~~~~~e~~~~~~~~~i~~~~~e~i~~l~~~~~~~~~~~~~~~~~~~I~~fll-----~~i~~d~~~~~l 147 (178)
T PF12717_consen 73 VDENPEIRSLARSFFSELLKKRNPNIIYNNFPELISSLNNCYEHPVYGPLSREKRKKIYKFLL-----DFIDKDKQKESL 147 (178)
T ss_pred cCCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHhCccccccccccCHHHHHHHHHHHH-----HHcCcHHHHHHH
Confidence 6999999999986542 1 22 345666666543 56677788888776 3444 5666665
Q ss_pred HH
Q 001827 231 LK 232 (1009)
Q Consensus 231 L~ 232 (1009)
+.
T Consensus 148 ~~ 149 (178)
T PF12717_consen 148 VE 149 (178)
T ss_pred HH
Confidence 54
No 18
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=96.92 E-value=0.015 Score=73.48 Aligned_cols=211 Identities=17% Similarity=0.257 Sum_probs=146.1
Q ss_pred hHHHHHHHhhhhhhc-cccCc--hhhHHHHHHHHHHHhhcchHHHHHHHHHHHHHhccCCcchhHhHHHHHHHHHhcCCC
Q 001827 37 QFSSAFFKTLTPLFT-VQRRT--ASAERVVRFVSAFAATNNDEFLEDFLKFLLVAAMAANKTARFRACQIISEIIMRLPD 113 (1009)
Q Consensus 37 ~F~~~F~~~l~~iL~-~~k~~--~~~dRvikFva~f~~~~~~~f~~~ll~~Ll~~~~akdk~VR~R~cqli~~ll~~l~~ 113 (1009)
.+.--|+.++...+- ++-.. ..+=+++.-++.|+. ++.-++.++-+++....-..-.||.-+.--|..++..+.+
T Consensus 418 ~ga~l~vs~lts~IR~lk~~~tK~~ALeLl~~lS~~i~--de~~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~ 495 (1431)
T KOG1240|consen 418 EGAVLFVSVLTSCIRALKTIQTKLAALELLQELSTYID--DEVKLDRVLPYFVHLLMDSEADVRATALETLTELLALVRD 495 (1431)
T ss_pred cceeeeHHHHHHHHHhhhcchhHHHHHHHHHHHhhhcc--hHHHHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccC
Confidence 444555555555442 22222 233344444444443 4457888899999988988999999999999999999877
Q ss_pred CCcCCHHHHH-HHHHHHHHHhCC-CChhHHHHHHHHHhccc-------------------CCCCC---------h-----
Q 001827 114 DTEVSDEVWD-EVIECMKVKVGD-KVSVIRTFAVRSLSRFV-------------------NDSDN---------S----- 158 (1009)
Q Consensus 114 ~~~idedl~~-~l~~~ll~Rl~D-K~~~VR~qAv~aL~rlQ-------------------~~~~d---------~----- 158 (1009)
-..+|..+|- =|.-.|..-+.| -...||+.=+.+|+.|. +++.+ .
T Consensus 496 ~~~~daniF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L 575 (1431)
T KOG1240|consen 496 IPPSDANIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAYRFLELTQELRQAGMLNDPNSETAPEQNYNTELQAL 575 (1431)
T ss_pred CCcccchhhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHHHHHHHHHHHHHHhcccccCcccccccccccchHHHHH
Confidence 6677888774 344455555678 66778877555555541 11211 0
Q ss_pred -HHHHHHHHhcCCCCCHHHHHHHHhhCCC----------CcccHHHHHHhhCCCChHHHHHHHHHHhc---cCCCCCCCH
Q 001827 159 -DILDLLLEVLPLEQNADVRKTIVLSLPP----------SNATSQAIIDCTLDVSESVRKAAYCVLAN---KFPLQSLSI 224 (1009)
Q Consensus 159 -~v~~~ll~~l~~D~s~eVRraaL~~i~~----------~~~tl~~il~R~rDv~~~VRr~ay~~L~~---~v~~~~lsi 224 (1009)
..++...-.|..|+.+-|||+.|.+|.+ |.--|++++.=+.|.|...|-++|+.|.- -+.+++.+
T Consensus 576 ~~~V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk~ksND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG~rs~s- 654 (1431)
T KOG1240|consen 576 HHTVEQMVSSLLSDSPPIVKRALLESIIPLCVFFGKEKSNDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVGWRSVS- 654 (1431)
T ss_pred HHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhhhcccccchHHHHHHHhcCccHHHHHHHHhhccceEEEEeeeeHH-
Confidence 1455556666689999999999999754 34458999999999999999999998862 34556543
Q ss_pred HHHHHHHHHhhcCCCHHHHHHHHHHH
Q 001827 225 KHRTMILKRGLADRSEAVSKECLKLM 250 (1009)
Q Consensus 225 ~qR~~LL~~GL~Dr~~~Vr~a~~~~L 250 (1009)
+-..=||++||.|+++.|-..+..-|
T Consensus 655 eyllPLl~Q~ltD~EE~Viv~aL~~l 680 (1431)
T KOG1240|consen 655 EYLLPLLQQGLTDGEEAVIVSALGSL 680 (1431)
T ss_pred HHHHHHHHHhccCcchhhHHHHHHHH
Confidence 23356788899999999998777766
No 19
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=96.82 E-value=0.0087 Score=64.22 Aligned_cols=174 Identities=17% Similarity=0.255 Sum_probs=98.5
Q ss_pred hHHHHHHHHHhhhhhhhHHHHHHHH---HHHhhCCChhhHHHHHHHhhhhhh----c-c-ccCchhhHHHHHHHHHHHhh
Q 001827 2 QVIAKILDESRTSYATHNRKLKDLR---AVRSKSPSTAQFSSAFFKTLTPLF----T-V-QRRTASAERVVRFVSAFAAT 72 (1009)
Q Consensus 2 ~~I~~iF~~aQ~s~~~H~k~~~~L~---~l~~~~~~~~~F~~~F~~~l~~iL----~-~-~k~~~~~dRvikFva~f~~~ 72 (1009)
+.|...|++ ..+-.+=.+.+..|. .+-... ....+...|..++..++ . + ..+...+...+.++..++..
T Consensus 6 ~~~~~~l~~-~~~~~~W~~r~~al~~L~~l~~~~-~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~ 83 (228)
T PF12348_consen 6 EEILAALEK-KESESDWEERVEALQKLRSLIKGN-APEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQ 83 (228)
T ss_dssp GGS-TTHHH-HHT-SSHHHHHHHHHHHHHHHHH--B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHH
T ss_pred HHHHHHHhc-cCCccCHHHHHHHHHHHHHHHHcC-CccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 456667755 333334444444444 443333 11345556655555222 1 1 23444555556666666553
Q ss_pred c---chHHHHHHHHHHHHHhccCCcchhHhHHHHHHHHHhcCCCCCcCCHHHHHHHHHHHHHHhCCCChhHHHHHHHHHh
Q 001827 73 N---NDEFLEDFLKFLLVAAMAANKTARFRACQIISEIIMRLPDDTEVSDEVWDEVIECMKVKVGDKVSVIRTFAVRSLS 149 (1009)
Q Consensus 73 ~---~~~f~~~ll~~Ll~~~~akdk~VR~R~cqli~~ll~~l~~~~~idedl~~~l~~~ll~Rl~DK~~~VR~qAv~aL~ 149 (1009)
. -+.++..++..|+..+..+.+.+|-.+...|..++.+.+ ....+ +...+..-+.+|.|.||..++..|.
T Consensus 84 l~~~~~~~~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~----~~~~~---~~~~l~~~~~~Kn~~vR~~~~~~l~ 156 (228)
T PF12348_consen 84 LGSHFEPYADILLPPLLKKLGDSKKFIREAANNALDAIIESCS----YSPKI---LLEILSQGLKSKNPQVREECAEWLA 156 (228)
T ss_dssp HGGGGHHHHHHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS-----H--HH---HHHHHHHHTT-S-HHHHHHHHHHHH
T ss_pred HhHhHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHCC----cHHHH---HHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 3 456788899999999999999999999999999999876 22222 2455556689999999999999888
Q ss_pred cccCC-C--C----C----hHHHHHHHHhcCCCCCHHHHHHHHhhCC
Q 001827 150 RFVND-S--D----N----SDILDLLLEVLPLEQNADVRKTIVLSLP 185 (1009)
Q Consensus 150 rlQ~~-~--~----d----~~v~~~ll~~l~~D~s~eVRraaL~~i~ 185 (1009)
.+-.. + . . ..+...+...+ .|++++||.++-..+.
T Consensus 157 ~~l~~~~~~~~~l~~~~~~~~l~~~l~~~l-~D~~~~VR~~Ar~~~~ 202 (228)
T PF12348_consen 157 IILEKWGSDSSVLQKSAFLKQLVKALVKLL-SDADPEVREAARECLW 202 (228)
T ss_dssp HHHTT-----GGG--HHHHHHHHHHHHHHH-TSS-HHHHHHHHHHHH
T ss_pred HHHHHccchHhhhcccchHHHHHHHHHHHC-CCCCHHHHHHHHHHHH
Confidence 87422 2 1 1 12556666666 5999999988875553
No 20
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=96.79 E-value=0.011 Score=69.34 Aligned_cols=114 Identities=15% Similarity=0.060 Sum_probs=91.0
Q ss_pred HHHHHHHhCCCChhHHHHHHHHHhcccCCCCChHHHHHHHHhcCCCCCHHHHHHHHhhCCC-CcccHHHHHHhhCCCChH
Q 001827 126 IECMKVKVGDKVSVIRTFAVRSLSRFVNDSDNSDILDLLLEVLPLEQNADVRKTIVLSLPP-SNATSQAIIDCTLDVSES 204 (1009)
Q Consensus 126 ~~~ll~Rl~DK~~~VR~qAv~aL~rlQ~~~~d~~v~~~ll~~l~~D~s~eVRraaL~~i~~-~~~tl~~il~R~rDv~~~ 204 (1009)
...++..+.|-.+.||..|+.||+.+.. ......|+..| .|+++.||++++.-+.. .....+.++.-+.|.++.
T Consensus 88 ~~~L~~~L~d~~~~vr~aaa~ALg~i~~----~~a~~~L~~~L-~~~~p~vR~aal~al~~r~~~~~~~L~~~L~d~d~~ 162 (410)
T TIGR02270 88 LRSVLAVLQAGPEGLCAGIQAALGWLGG----RQAEPWLEPLL-AASEPPGRAIGLAALGAHRHDPGPALEAALTHEDAL 162 (410)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHhcCCc----hHHHHHHHHHh-cCCChHHHHHHHHHHHhhccChHHHHHHHhcCCCHH
Confidence 5666777889999999999999999963 35667788888 58899999999976653 355788888888999999
Q ss_pred HHHHHHHHHhccCCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHHH
Q 001827 205 VRKAAYCVLANKFPLQSLSIKHRTMILKRGLADRSEAVSKECLKLM 250 (1009)
Q Consensus 205 VRr~ay~~L~~~v~~~~lsi~qR~~LL~~GL~Dr~~~Vr~a~~~~L 250 (1009)
||+.++..|+ .++.... ...|..++.|.++.||.++..-+
T Consensus 163 Vra~A~raLG-~l~~~~a-----~~~L~~al~d~~~~VR~aA~~al 202 (410)
T TIGR02270 163 VRAAALRALG-ELPRRLS-----ESTLRLYLRDSDPEVRFAALEAG 202 (410)
T ss_pred HHHHHHHHHH-hhccccc-----hHHHHHHHcCCCHHHHHHHHHHH
Confidence 9999999998 3432222 33355789999999999998777
No 21
>PTZ00429 beta-adaptin; Provisional
Probab=96.70 E-value=0.12 Score=64.99 Aligned_cols=101 Identities=18% Similarity=0.178 Sum_probs=77.9
Q ss_pred chHHHHHHHHHHHHHhccCCcchhHhHHHHHHHHHhcCCCCCcCCHHHHHHHHHHHHHHhCCCChhHHHHHHHHHhcccC
Q 001827 74 NDEFLEDFLKFLLVAAMAANKTARFRACQIISEIIMRLPDDTEVSDEVWDEVIECMKVKVGDKVSVIRTFAVRSLSRFVN 153 (1009)
Q Consensus 74 ~~~f~~~ll~~Ll~~~~akdk~VR~R~cqli~~ll~~l~~~~~idedl~~~l~~~ll~Rl~DK~~~VR~qAv~aL~rlQ~ 153 (1009)
..+..--.++.+.+-..++|..||--+.+.++. +. ..++.+.+...+.+-+.|+.|.||.-|+.|+.|+-.
T Consensus 99 ~pelalLaINtl~KDl~d~Np~IRaLALRtLs~----Ir-----~~~i~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~ 169 (746)
T PTZ00429 99 QPEKALLAVNTFLQDTTNSSPVVRALAVRTMMC----IR-----VSSVLEYTLEPLRRAVADPDPYVRKTAAMGLGKLFH 169 (746)
T ss_pred ChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHc----CC-----cHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHh
Confidence 344555567888888888899999888876655 33 456778888888888999999999999999999743
Q ss_pred -CCC---ChHHHHHHHHhcCCCCCHHHHHHHHhhC
Q 001827 154 -DSD---NSDILDLLLEVLPLEQNADVRKTIVLSL 184 (1009)
Q Consensus 154 -~~~---d~~v~~~ll~~l~~D~s~eVRraaL~~i 184 (1009)
+++ +...++.|..+| .|+++.|...|+.-+
T Consensus 170 ~~pelv~~~~~~~~L~~LL-~D~dp~Vv~nAl~aL 203 (746)
T PTZ00429 170 DDMQLFYQQDFKKDLVELL-NDNNPVVASNAAAIV 203 (746)
T ss_pred hCcccccccchHHHHHHHh-cCCCccHHHHHHHHH
Confidence 332 234677888877 599999999998643
No 22
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=96.24 E-value=0.031 Score=73.05 Aligned_cols=137 Identities=18% Similarity=0.242 Sum_probs=100.6
Q ss_pred HHHHHHHHHHHHHhccCCcchhHhHHHHHHHHHhcCCCCCcCCHHHHHHHHHHHHHHhCCCChhHHHHHHHHHhcc-cCC
Q 001827 76 EFLEDFLKFLLVAAMAANKTARFRACQIISEIIMRLPDDTEVSDEVWDEVIECMKVKVGDKVSVIRTFAVRSLSRF-VND 154 (1009)
Q Consensus 76 ~f~~~ll~~Ll~~~~akdk~VR~R~cqli~~ll~~l~~~~~idedl~~~l~~~ll~Rl~DK~~~VR~qAv~aL~rl-Q~~ 154 (1009)
..+..++.+|.....+.+-.+|.-++-+++.++...+. .++ +-|+.+-.+.+.|+.|+.+.||..+|....-. ++.
T Consensus 255 ~ll~~vip~l~~eL~se~~~~Rl~a~~lvg~~~~~~~~--~l~-~~~~~~~~~fl~r~~D~~~~vR~~~v~~~~~~l~~~ 331 (1266)
T KOG1525|consen 255 QLLLAVIPQLEFELLSEQEEVRLKAVKLVGRMFSDKDS--QLS-ETYDDLWSAFLGRFNDISVEVRMECVESIKQCLLNN 331 (1266)
T ss_pred HHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhcchh--hhc-ccchHHHHHHHHHhccCChhhhhhHHHHhHHHHhcC
Confidence 35667788899999999999999999999999998774 455 77888999999999999999999999876654 444
Q ss_pred CCCh-H-HHHHHHHhcCCCCCHHHHHHHHhhC--------CCCcccHHHHHHhhCCCChHHHHHHHHHHhc
Q 001827 155 SDNS-D-ILDLLLEVLPLEQNADVRKTIVLSL--------PPSNATSQAIIDCTLDVSESVRKAAYCVLAN 215 (1009)
Q Consensus 155 ~~d~-~-v~~~ll~~l~~D~s~eVRraaL~~i--------~~~~~tl~~il~R~rDv~~~VRr~ay~~L~~ 215 (1009)
+.-. . .+...+.....|+.-.||..++..+ ...+.++..+.+|+||....||+.|...|++
T Consensus 332 ~~~~~~~~~~~~l~~~~~D~~~rir~~v~i~~~~v~~~~l~~~~~ll~~~~eR~rDKk~~VR~~Am~~Laq 402 (1266)
T KOG1525|consen 332 PSIAKASTILLALRERDLDEDVRVRTQVVIVACDVMKFKLVYIPLLLKLVAERLRDKKIKVRKQAMNGLAQ 402 (1266)
T ss_pred chhhhHHHHHHHHHhhcCChhhhheeeEEEEEeehhHhhhhhhHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 3321 2 2222222232455555555444222 1112288899999999999999999988774
No 23
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.90 E-value=0.031 Score=67.12 Aligned_cols=171 Identities=23% Similarity=0.212 Sum_probs=126.9
Q ss_pred HHHHHHhccCCcchhHhHHHHHHHHHhcCCCCCcC---CHHHHHHHHHHHHHHhCCCChhHHHHHHHHHhcccCCC----
Q 001827 83 KFLLVAAMAANKTARFRACQIISEIIMRLPDDTEV---SDEVWDEVIECMKVKVGDKVSVIRTFAVRSLSRFVNDS---- 155 (1009)
Q Consensus 83 ~~Ll~~~~akdk~VR~R~cqli~~ll~~l~~~~~i---dedl~~~l~~~ll~Rl~DK~~~VR~qAv~aL~rlQ~~~---- 155 (1009)
+...+.+.-.+-.||.-++|++...-+..|-..+. +.++++.....+-.-++|.+-.||++|..+|+-|-+-.
T Consensus 237 ~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e~~e~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~i 316 (823)
T KOG2259|consen 237 SRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERESEEEKLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEII 316 (823)
T ss_pred HHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccchhhhhhhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhHHHHH
Confidence 33444556667789999999999998887421111 44688888888888899999999999999999873200
Q ss_pred --------------------------------------CC-------h---HH-----HHHHHHhcCCCCCHHHHHHHHh
Q 001827 156 --------------------------------------DN-------S---DI-----LDLLLEVLPLEQNADVRKTIVL 182 (1009)
Q Consensus 156 --------------------------------------~d-------~---~v-----~~~ll~~l~~D~s~eVRraaL~ 182 (1009)
.| . .+ --+|+.-|+ |.--|||+||+.
T Consensus 317 ~QTLdKKlms~lRRkr~ahkrpk~l~s~GewSsGk~~~advpsee~d~~~~siI~sGACGA~VhGlE-DEf~EVR~AAV~ 395 (823)
T KOG2259|consen 317 QQTLDKKLMSRLRRKRTAHKRPKALYSSGEWSSGKEWNADVPSEEDDEEEESIIPSGACGALVHGLE-DEFYEVRRAAVA 395 (823)
T ss_pred HHHHHHHHhhhhhhhhhcccchHHHHhcCCcccCccccccCchhhccccccccccccccceeeeech-HHHHHHHHHHHH
Confidence 00 0 01 135676775 888899999996
Q ss_pred hC---CCC-----cccHHHHHHhhCCCChHHHHHHHHHHhccCCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHH
Q 001827 183 SL---PPS-----NATSQAIIDCTLDVSESVRKAAYCVLANKFPLQSLSIKHRTMILKRGLADRSEAVSKECLKLMKDHW 254 (1009)
Q Consensus 183 ~i---~~~-----~~tl~~il~R~rDv~~~VRr~ay~~L~~~v~~~~lsi~qR~~LL~~GL~Dr~~~Vr~a~~~~L~~~W 254 (1009)
++ +.+ .+++.++++-..|-.+.||-.+...|..-...-.+..+|-..++. .|.|+++.||++...+|...-
T Consensus 396 Sl~~La~ssP~FA~~aldfLvDMfNDE~~~VRL~ai~aL~~Is~~l~i~eeql~~il~-~L~D~s~dvRe~l~elL~~~~ 474 (823)
T KOG2259|consen 396 SLCSLATSSPGFAVRALDFLVDMFNDEIEVVRLKAIFALTMISVHLAIREEQLRQILE-SLEDRSVDVREALRELLKNAR 474 (823)
T ss_pred HHHHHHcCCCCcHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHheecHHHHHHHHH-HHHhcCHHHHHHHHHHHHhcC
Confidence 64 332 467999999999999999999888766322234566777777887 999999999999999996443
Q ss_pred H
Q 001827 255 L 255 (1009)
Q Consensus 255 l 255 (1009)
+
T Consensus 475 ~ 475 (823)
T KOG2259|consen 475 V 475 (823)
T ss_pred C
Confidence 3
No 24
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=95.86 E-value=0.043 Score=66.26 Aligned_cols=149 Identities=19% Similarity=0.273 Sum_probs=91.1
Q ss_pred hHHHHHHHHHHHhhcchHHHHHHHHHHHHHhccCCcchhHhHHHHHHHHHhcCCCCCcCCHHHHHHHHHHHHHHhCCCCh
Q 001827 59 AERVVRFVSAFAATNNDEFLEDFLKFLLVAAMAANKTARFRACQIISEIIMRLPDDTEVSDEVWDEVIECMKVKVGDKVS 138 (1009)
Q Consensus 59 ~dRvikFva~f~~~~~~~f~~~ll~~Ll~~~~akdk~VR~R~cqli~~ll~~l~~~~~idedl~~~l~~~ll~Rl~DK~~ 138 (1009)
+|+++++......+.+..=-..-...++.+.... ..+.-=+.|+|...+...| +|-+...+++++-+-|-+.
T Consensus 2 ie~lY~~~~~L~~a~d~~~~~~~y~~il~~~kg~-~k~K~Laaq~I~kffk~FP-------~l~~~Ai~a~~DLcEDed~ 73 (556)
T PF05918_consen 2 IEKLYENYEILADAKDKSQHEEDYKEILDGVKGS-PKEKRLAAQFIPKFFKHFP-------DLQEEAINAQLDLCEDEDV 73 (556)
T ss_dssp HHHHHHHHHHHHHTGGGGGGHHHHHHHHHGGGS--HHHHHHHHHHHHHHHCC-G-------GGHHHHHHHHHHHHT-SSH
T ss_pred HHHHHHHHhHhhcCCCcccCHHHHHHHHHHccCC-HHHHHHHHHHHHHHHhhCh-------hhHHHHHHHHHHHHhcccH
Confidence 5666666666655432111112334566666654 4455567999999999998 3555667788888999999
Q ss_pred hHHHHHHHHHhcccCCCCC--hHHHHHHHHhcCCCCCHH---HHHHHHhhCCCC-cccHHHHHHhhC---CCChHHHHHH
Q 001827 139 VIRTFAVRSLSRFVNDSDN--SDILDLLLEVLPLEQNAD---VRKTIVLSLPPS-NATSQAIIDCTL---DVSESVRKAA 209 (1009)
Q Consensus 139 ~VR~qAv~aL~rlQ~~~~d--~~v~~~ll~~l~~D~s~e---VRraaL~~i~~~-~~tl~~il~R~r---Dv~~~VRr~a 209 (1009)
.||+|||.+|-.|+.+..+ ..|++.|..+|+.|...| |+++.+.-+..+ +.||..+...+. --++.||.-+
T Consensus 74 ~iR~~aik~lp~~ck~~~~~v~kvaDvL~QlL~tdd~~E~~~v~~sL~~ll~~d~k~tL~~lf~~i~~~~~~de~~Re~~ 153 (556)
T PF05918_consen 74 QIRKQAIKGLPQLCKDNPEHVSKVADVLVQLLQTDDPVELDAVKNSLMSLLKQDPKGTLTGLFSQIESSKSGDEQVRERA 153 (556)
T ss_dssp HHHHHHHHHGGGG--T--T-HHHHHHHHHHHTT---HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH---HS-HHHHHHH
T ss_pred HHHHHHHHhHHHHHHhHHHHHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccCchHHHHHH
Confidence 9999999999999866433 358899999999888776 444444444433 456666665554 3445666666
Q ss_pred HHHHhc
Q 001827 210 YCVLAN 215 (1009)
Q Consensus 210 y~~L~~ 215 (1009)
...|..
T Consensus 154 lkFl~~ 159 (556)
T PF05918_consen 154 LKFLRE 159 (556)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 655543
No 25
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=95.79 E-value=0.33 Score=59.13 Aligned_cols=223 Identities=15% Similarity=0.170 Sum_probs=141.3
Q ss_pred HHHHHHHHHhhc-chHHHHHHHHHHHH-HhccCCcchhHhHHHHHHHHHhcCCCCCcCCHHHHHHHHHHHHHHhCCCChh
Q 001827 62 VVRFVSAFAATN-NDEFLEDFLKFLLV-AAMAANKTARFRACQIISEIIMRLPDDTEVSDEVWDEVIECMKVKVGDKVSV 139 (1009)
Q Consensus 62 vikFva~f~~~~-~~~f~~~ll~~Ll~-~~~akdk~VR~R~cqli~~ll~~l~~~~~idedl~~~l~~~ll~Rl~DK~~~ 139 (1009)
+.+..++++.-. .+.|-..|++.+-. ..--|...+==|+..+++.+++.+++ ....+|+-+.+...++.-.--|.-+
T Consensus 22 ~~kl~~k~~em~t~~~F~eeflr~vn~il~vkKresi~dRIl~fla~fv~sl~q-~d~e~DlV~~~f~hlLRg~Eskdk~ 100 (892)
T KOG2025|consen 22 YSKLLAKVMEMLTAHEFSEEFLRVVNYILLVKKRESIPDRILSFLARFVESLPQ-LDKEEDLVAGTFYHLLRGTESKDKK 100 (892)
T ss_pred HHHHHHHHHHhhhHhhhHHHHHHHHHHheeeccCCCcHHHHHHHHHHHHHhhhc-cCchhhHHHHHHHHHHhcccCcchh
Confidence 445555555422 23344444433331 22345566667888999999999974 4456779999999999989899999
Q ss_pred HHHHHHHHHhcccCC--CCChHH----HHHHHHhcCCCCCHHHHHHHHhhCC------CCcc--cHHHHHHhh-CCCChH
Q 001827 140 IRTFAVRSLSRFVND--SDNSDI----LDLLLEVLPLEQNADVRKTIVLSLP------PSNA--TSQAIIDCT-LDVSES 204 (1009)
Q Consensus 140 VR~qAv~aL~rlQ~~--~~d~~v----~~~ll~~l~~D~s~eVRraaL~~i~------~~~~--tl~~il~R~-rDv~~~ 204 (1009)
||-.....|.++-+. ..|+++ ...++..+ .|.-|.||+.|+.++. .+++ ....+..-+ .|-++.
T Consensus 101 VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl-~Drep~VRiqAv~aLsrlQ~d~~dee~~v~n~l~~liqnDpS~E 179 (892)
T KOG2025|consen 101 VRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRL-KDREPNVRIQAVLALSRLQGDPKDEECPVVNLLKDLIQNDPSDE 179 (892)
T ss_pred HHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHH-hccCchHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCcHH
Confidence 999999999999652 235554 45555566 6999999999997763 2222 122333333 699999
Q ss_pred HHHHHHHHHhccCCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhhhcCCCHHHHhhhc--CcccchHHHHHH
Q 001827 205 VRKAAYCVLANKFPLQSLSIKHRTMILKRGLADRSEAVSKECLKLMKDHWLAKHCNGNPIELLKYL--DVETYELVGESV 282 (1009)
Q Consensus 205 VRr~ay~~L~~~v~~~~lsi~qR~~LL~~GL~Dr~~~Vr~a~~~~L~~~Wl~~~~~gdi~~LL~~L--DV~~~~~~ae~~ 282 (1009)
|||+|..-|+. +. .-+-.++. -=.|=+.++|+-+-..++++- + .+--++-+....| ++...+..++.+
T Consensus 180 VRRaaLsnI~v--dn-----sTlp~Ive-RarDV~~anRrlvY~r~lpki-d-~r~lsi~krv~LlewgLnDRe~sVk~A 249 (892)
T KOG2025|consen 180 VRRAALSNISV--DN-----STLPCIVE-RARDVSGANRRLVYERCLPKI-D-LRSLSIDKRVLLLEWGLNDREFSVKGA 249 (892)
T ss_pred HHHHHHHhhcc--Cc-----ccchhHHH-HhhhhhHHHHHHHHHHhhhhh-h-hhhhhHHHHHHHHHHhhhhhhhHHHHH
Confidence 99999999972 22 23345555 223445566655554444443 2 1222333333333 555566677788
Q ss_pred HHHHHhhhhccccc
Q 001827 283 MAALLKEEYISSAD 296 (1009)
Q Consensus 283 L~~lf~~~~~~~~~ 296 (1009)
+..++-++|+...+
T Consensus 250 ~~d~il~~Wl~~~d 263 (892)
T KOG2025|consen 250 LVDAILSGWLRFSD 263 (892)
T ss_pred HHHHHHHHHhhhcc
Confidence 88777778887654
No 26
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=95.78 E-value=0.8 Score=57.34 Aligned_cols=155 Identities=16% Similarity=0.185 Sum_probs=108.0
Q ss_pred hHHHHHHHHHHHhhCCChhhHHHHHHHhhhhhhccccCchhhHHHHHHHHHHHhhcchHHHHHHHHHHHHHhccCCcchh
Q 001827 18 HNRKLKDLRAVRSKSPSTAQFSSAFFKTLTPLFTVQRRTASAERVVRFVSAFAATNNDEFLEDFLKFLLVAAMAANKTAR 97 (1009)
Q Consensus 18 H~k~~~~L~~l~~~~~~~~~F~~~F~~~l~~iL~~~k~~~~~dRvikFva~f~~~~~~~f~~~ll~~Ll~~~~akdk~VR 97 (1009)
-++.+..++++......++.+..-|-++++.+. -++....|++-+--.-++.......-..++.+.+-+...|.-+|
T Consensus 33 ~~~kidAmK~iIa~M~~G~dmssLf~dViK~~~---trd~ElKrL~ylYl~~yak~~P~~~lLavNti~kDl~d~N~~iR 109 (757)
T COG5096 33 DYKKIDAMKKIIAQMSLGEDMSSLFPDVIKNVA---TRDVELKRLLYLYLERYAKLKPELALLAVNTIQKDLQDPNEEIR 109 (757)
T ss_pred hHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHH---hcCHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhccCCCHHHH
Confidence 456777788776655444568888888887776 45677888876644443333344444566777788888888888
Q ss_pred HhHHHHHHHHHhcCCCCCcCCHHHHHHHHHHHHHHhCCCChhHHHHHHHHHhcccCCCCC----hHHHHHHHHhcCCCCC
Q 001827 98 FRACQIISEIIMRLPDDTEVSDEVWDEVIECMKVKVGDKVSVIRTFAVRSLSRFVNDSDN----SDILDLLLEVLPLEQN 173 (1009)
Q Consensus 98 ~R~cqli~~ll~~l~~~~~idedl~~~l~~~ll~Rl~DK~~~VR~qAv~aL~rlQ~~~~d----~~v~~~ll~~l~~D~s 173 (1009)
--+.+.++. ++ +.+++..+...+.+-+.|+.|-||..|+.|+.++-.-+.+ ......+..++ .|++
T Consensus 110 ~~AlR~ls~----l~-----~~el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~~l~~~~g~~~~l~~l~-~D~d 179 (757)
T COG5096 110 GFALRTLSL----LR-----VKELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDKDLYHELGLIDILKELV-ADSD 179 (757)
T ss_pred HHHHHHHHh----cC-----hHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCHhhhhcccHHHHHHHHh-hCCC
Confidence 888877665 44 4467777788888888999999999999999888533221 12445555555 5899
Q ss_pred HHHHHHHHhhCC
Q 001827 174 ADVRKTIVLSLP 185 (1009)
Q Consensus 174 ~eVRraaL~~i~ 185 (1009)
|.|=++|+..+.
T Consensus 180 P~Vi~nAl~sl~ 191 (757)
T COG5096 180 PIVIANALASLA 191 (757)
T ss_pred chHHHHHHHHHH
Confidence 999888887664
No 27
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=95.59 E-value=0.2 Score=59.03 Aligned_cols=145 Identities=15% Similarity=0.038 Sum_probs=105.0
Q ss_pred HHHHHHHh-CCCChhHHHHHHHHHhcccCCCCChHHHHHHHHhcCCCCCHHHHHHHHhhCCC--CcccHHHHHHhhCCCC
Q 001827 126 IECMKVKV-GDKVSVIRTFAVRSLSRFVNDSDNSDILDLLLEVLPLEQNADVRKTIVLSLPP--SNATSQAIIDCTLDVS 202 (1009)
Q Consensus 126 ~~~ll~Rl-~DK~~~VR~qAv~aL~rlQ~~~~d~~v~~~ll~~l~~D~s~eVRraaL~~i~~--~~~tl~~il~R~rDv~ 202 (1009)
...++..+ .|..+.||..|+.+|.... +...++.++..|. |+.+.||.++...+.. .+...+.++.-+.|-+
T Consensus 56 ~~~L~~aL~~d~~~ev~~~aa~al~~~~----~~~~~~~L~~~L~-d~~~~vr~aaa~ALg~i~~~~a~~~L~~~L~~~~ 130 (410)
T TIGR02270 56 TELLVSALAEADEPGRVACAALALLAQE----DALDLRSVLAVLQ-AGPEGLCAGIQAALGWLGGRQAEPWLEPLLAASE 130 (410)
T ss_pred HHHHHHHHhhCCChhHHHHHHHHHhccC----ChHHHHHHHHHhc-CCCHHHHHHHHHHHhcCCchHHHHHHHHHhcCCC
Confidence 45566667 5888999999999997663 2235899999995 8999999999999975 4566888899999999
Q ss_pred hHHHHHHHHHHhccCCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhhhcCCCHHHHhh-hcCcccchHHHHH
Q 001827 203 ESVRKAAYCVLANKFPLQSLSIKHRTMILKRGLADRSEAVSKECLKLMKDHWLAKHCNGNPIELLK-YLDVETYELVGES 281 (1009)
Q Consensus 203 ~~VRr~ay~~L~~~v~~~~lsi~qR~~LL~~GL~Dr~~~Vr~a~~~~L~~~Wl~~~~~gdi~~LL~-~LDV~~~~~~ae~ 281 (1009)
+.||++++..++.+. .. + ..-+...|+|.++.||.++...| .|+.. .+.+..|. .++= .++.+-..
T Consensus 131 p~vR~aal~al~~r~-~~--~----~~~L~~~L~d~d~~Vra~A~raL--G~l~~---~~a~~~L~~al~d-~~~~VR~a 197 (410)
T TIGR02270 131 PPGRAIGLAALGAHR-HD--P----GPALEAALTHEDALVRAAALRAL--GELPR---RLSESTLRLYLRD-SDPEVRFA 197 (410)
T ss_pred hHHHHHHHHHHHhhc-cC--h----HHHHHHHhcCCCHHHHHHHHHHH--Hhhcc---ccchHHHHHHHcC-CCHHHHHH
Confidence 999999998887422 11 1 22344578899999999999998 78862 24434333 3332 34566666
Q ss_pred HHHHHHh
Q 001827 282 VMAALLK 288 (1009)
Q Consensus 282 ~L~~lf~ 288 (1009)
++..+-.
T Consensus 198 A~~al~~ 204 (410)
T TIGR02270 198 ALEAGLL 204 (410)
T ss_pred HHHHHHH
Confidence 6666543
No 28
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=95.51 E-value=0.21 Score=52.08 Aligned_cols=158 Identities=20% Similarity=0.218 Sum_probs=110.5
Q ss_pred ChhHHHHHHHHHHHHHHhhCCchhhhhcccCcCCCCCCCCCCCCCCCCCCCCCccchhHHHHHHHHhhhcccCCCCCCCC
Q 001827 571 CPTVSIMAGKALIDLGMWHGPQEVDKAMGQKDISFQPRNDKMTSSPINLSETDGDLNVELLDLLYAGIVASDRGKYSGDE 650 (1009)
Q Consensus 571 ~~~vki~ALkaifDlll~hG~~~ld~~~~~~~~~s~~~~~~~~~~~~~~s~~e~~~~~~llklL~~~L~~~~~~~~~~~e 650 (1009)
++.||..++-++.|+...|+. .++ ..++.+++.|. ++
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~-~ve---------------------------------~~~~~l~~~L~---------D~ 37 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPN-LVE---------------------------------PYLPNLYKCLR---------DE 37 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcH-HHH---------------------------------hHHHHHHHHHC---------CC
Confidence 468999999999999999953 222 33456666665 47
Q ss_pred chhHHHHHHHHHHHHhhcCCCCCCCCchhhHHHHHHHHHHhcCCCCcchhHHHHHHHhhhcccccCCHHHHHHHHHHhHH
Q 001827 651 NESIEAVIGEGFAKVLLLSEKYPSIPASLHSLLLAKLINLYFSNESKDLQRLKQCLSIFFEHYASLSANHKRCLSKAFVP 730 (1009)
Q Consensus 651 ~~evq~iaaEGlaKLLL~~~~~~~~~~~~~~~lLs~LvLlyFnP~t~~n~~LRQcLsvFFp~ya~ss~~nQ~~l~~aFlp 730 (1009)
++.||-.|.-.|++|++.|.+-. ...+|..++... ..+|+.+|+.-..||.-+... .+...+...|.+
T Consensus 38 ~~~VR~~al~~Ls~Li~~d~ik~------k~~l~~~~l~~l----~D~~~~Ir~~A~~~~~e~~~~--~~~~~i~~~~~e 105 (178)
T PF12717_consen 38 DPLVRKTALLVLSHLILEDMIKV------KGQLFSRILKLL----VDENPEIRSLARSFFSELLKK--RNPNIIYNNFPE 105 (178)
T ss_pred CHHHHHHHHHHHHHHHHcCceee------hhhhhHHHHHHH----cCCCHHHHHHHHHHHHHHHHh--ccchHHHHHHHH
Confidence 89999999999999999875543 255656666655 556889999999999887743 256788999999
Q ss_pred HHHhhcccccCCCCCCcccc-chhhhhhHHHHHHHHHhhcccccccccccccccCCCCCCCCCcccccCccccchhhHHH
Q 001827 731 ALRSMWPGINGNAGGSSLVV-SNKRKRAVQASKFLLQMMQAPLYAKETEVEDENGIGNMPETSDVSEQSSLECGEEGLAI 809 (1009)
Q Consensus 731 tL~~l~~~~~~na~~ss~~~-s~~~~~~~~v~~f~~~l~~~~~~~~~t~~~~~~~~~~~~~~d~~~~~~~~~~~h~~LAi 809 (1009)
.+..+ |...+.+.. ...++.--++.+|+++.++.. + .-.+|.-
T Consensus 106 ~i~~l------~~~~~~~~~~~~~~~~~~~I~~fll~~i~~d---~---------------------------~~~~l~~ 149 (178)
T PF12717_consen 106 LISSL------NNCYEHPVYGPLSREKRKKIYKFLLDFIDKD---K---------------------------QKESLVE 149 (178)
T ss_pred HHHHH------hCccccccccccCHHHHHHHHHHHHHHcCcH---H---------------------------HHHHHHH
Confidence 99887 222222211 122334444788888655530 0 1245999
Q ss_pred HHHHHHHhcC
Q 001827 810 RIAVEVLSIH 819 (1009)
Q Consensus 810 ~i~~Eil~~~ 819 (1009)
+||.+++...
T Consensus 150 kl~~~~~~~~ 159 (178)
T PF12717_consen 150 KLCQRFLNAV 159 (178)
T ss_pred HHHHHHHHHc
Confidence 9999999864
No 29
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=95.25 E-value=1 Score=53.96 Aligned_cols=180 Identities=22% Similarity=0.313 Sum_probs=126.7
Q ss_pred chHHHHHHHHHHHHHhccCCcchhHhHHHHHHHHHhcCCCC-----C-----------cC------------CHHHHHHH
Q 001827 74 NDEFLEDFLKFLLVAAMAANKTARFRACQIISEIIMRLPDD-----T-----------EV------------SDEVWDEV 125 (1009)
Q Consensus 74 ~~~f~~~ll~~Ll~~~~akdk~VR~R~cqli~~ll~~l~~~-----~-----------~i------------dedl~~~l 125 (1009)
.++|+...+.-|-.++.+.....||-+.++|+.+-..-|+. . .| .++-.+.+
T Consensus 297 ~~~~~~~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~kv~vcN~evEsLIsd~Nr~IstyAITtLLKTGt~e~idrL 376 (898)
T COG5240 297 GSQFVDQTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQKVSVCNKEVESLISDENRTISTYAITTLLKTGTEETIDRL 376 (898)
T ss_pred CHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCceeeecChhHHHHhhcccccchHHHHHHHHHcCchhhHHHH
Confidence 46789988888888899999999999999999998764431 1 11 12223333
Q ss_pred ---HHHHHHHhCCCChhHHHHHHHHHhcccCCCCC-------------------hHHHHHHHHhcCCCCCHHHHHHHHhh
Q 001827 126 ---IECMKVKVGDKVSVIRTFAVRSLSRFVNDSDN-------------------SDILDLLLEVLPLEQNADVRKTIVLS 183 (1009)
Q Consensus 126 ---~~~ll~Rl~DK~~~VR~qAv~aL~rlQ~~~~d-------------------~~v~~~ll~~l~~D~s~eVRraaL~~ 183 (1009)
+-.++.-+.|-..-|=+.|++.||.+-....+ .-+++++.++|.+||...-|.....|
T Consensus 377 v~~I~sfvhD~SD~FKiI~ida~rsLsl~Fp~k~~s~l~FL~~~L~~eGg~eFK~~~Vdaisd~~~~~p~skEraLe~LC 456 (898)
T COG5240 377 VNLIPSFVHDMSDGFKIIAIDALRSLSLLFPSKKLSYLDFLGSSLLQEGGLEFKKYMVDAISDAMENDPDSKERALEVLC 456 (898)
T ss_pred HHHHHHHHHhhccCceEEeHHHHHHHHhhCcHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHhhCchHHHHHHHHHH
Confidence 34455556777777888888888876311110 12688999999999766555433322
Q ss_pred C----------------------CC--C-cccHHHHHHhhCCCChHHHHHHHHHHhccCCC---CCCCHHHHHHHHHHhh
Q 001827 184 L----------------------PP--S-NATSQAIIDCTLDVSESVRKAAYCVLANKFPL---QSLSIKHRTMILKRGL 235 (1009)
Q Consensus 184 i----------------------~~--~-~~tl~~il~R~rDv~~~VRr~ay~~L~~~v~~---~~lsi~qR~~LL~~GL 235 (1009)
- |. + ...+.+|..|+.=-+..||.+|.+.|. |+.+ .-.+.+.-..+|++.|
T Consensus 457 ~fIEDcey~~I~vrIL~iLG~EgP~a~~P~~yvrhIyNR~iLEN~ivRsaAv~aLs-kf~ln~~d~~~~~sv~~~lkRcl 535 (898)
T COG5240 457 TFIEDCEYHQITVRILGILGREGPRAKTPGKYVRHIYNRLILENNIVRSAAVQALS-KFALNISDVVSPQSVENALKRCL 535 (898)
T ss_pred HHHhhcchhHHHHHHHHHhcccCCCCCCcchHHHHHHHHHHHhhhHHHHHHHHHHH-HhccCccccccHHHHHHHHHHHh
Confidence 1 11 1 246789999999899999999999998 4432 2345566688999999
Q ss_pred cCCCHHHHHHHHHHHHHHHHh
Q 001827 236 ADRSEAVSKECLKLMKDHWLA 256 (1009)
Q Consensus 236 ~Dr~~~Vr~a~~~~L~~~Wl~ 256 (1009)
+|.++.||+-+.-.| ..++
T Consensus 536 nD~DdeVRdrAsf~l--~~~~ 554 (898)
T COG5240 536 NDQDDEVRDRASFLL--RNMR 554 (898)
T ss_pred hcccHHHHHHHHHHH--Hhhh
Confidence 999999999887665 4454
No 30
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=95.13 E-value=0.22 Score=62.14 Aligned_cols=129 Identities=19% Similarity=0.235 Sum_probs=95.0
Q ss_pred HHHHHHHHHHHhccCCcchhHhHHHHHHHHHhcCCCCCcCCHHHHHHHHHHHHHHhCCCChhHHHHHHHHHhcccCCCCC
Q 001827 78 LEDFLKFLLVAAMAANKTARFRACQIISEIIMRLPDDTEVSDEVWDEVIECMKVKVGDKVSVIRTFAVRSLSRFVNDSDN 157 (1009)
Q Consensus 78 ~~~ll~~Ll~~~~akdk~VR~R~cqli~~ll~~l~~~~~idedl~~~l~~~ll~Rl~DK~~~VR~qAv~aL~rlQ~~~~d 157 (1009)
+..++.++++...++|+-++ .|+..-+...+ +...++.-.....+++=++|.+|.+|..|++.|+.+-.+.--
T Consensus 53 mssLf~dViK~~~trd~ElK----rL~ylYl~~ya---k~~P~~~lLavNti~kDl~d~N~~iR~~AlR~ls~l~~~el~ 125 (757)
T COG5096 53 MSSLFPDVIKNVATRDVELK----RLLYLYLERYA---KLKPELALLAVNTIQKDLQDPNEEIRGFALRTLSLLRVKELL 125 (757)
T ss_pred hHHHHHHHHHHHHhcCHHHH----HHHHHHHHHHh---ccCHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHhcChHHHH
Confidence 56667777777777777765 35555555565 456677777788899999999999999999999999533223
Q ss_pred hHHHHHHHHhcCCCCCHHHHHHHHhhCCC----Cc------ccHHHHHHhhCCCChHHHHHHHHHHh
Q 001827 158 SDILDLLLEVLPLEQNADVRKTIVLSLPP----SN------ATSQAIIDCTLDVSESVRKAAYCVLA 214 (1009)
Q Consensus 158 ~~v~~~ll~~l~~D~s~eVRraaL~~i~~----~~------~tl~~il~R~rDv~~~VRr~ay~~L~ 214 (1009)
+.++..+..++ +|++|.|||+|..++.. ++ +-......-+.|.+|.|=+.|+..|.
T Consensus 126 ~~~~~~ik~~l-~d~~ayVRk~Aalav~kly~ld~~l~~~~g~~~~l~~l~~D~dP~Vi~nAl~sl~ 191 (757)
T COG5096 126 GNIIDPIKKLL-TDPHAYVRKTAALAVAKLYRLDKDLYHELGLIDILKELVADSDPIVIANALASLA 191 (757)
T ss_pred HHHHHHHHHHc-cCCcHHHHHHHHHHHHHHHhcCHhhhhcccHHHHHHHHhhCCCchHHHHHHHHHH
Confidence 45677777788 69999999999977642 22 23344445567888888888888877
No 31
>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]
Probab=95.12 E-value=0.066 Score=68.21 Aligned_cols=128 Identities=16% Similarity=0.155 Sum_probs=101.4
Q ss_pred HHHHHhCCCChhHHHHHHHHHhccc-CCCC---ChHHHHHHHHhcCCCCCHHHHHHHHhhCCCC------cccHH-----
Q 001827 128 CMKVKVGDKVSVIRTFAVRSLSRFV-NDSD---NSDILDLLLEVLPLEQNADVRKTIVLSLPPS------NATSQ----- 192 (1009)
Q Consensus 128 ~ll~Rl~DK~~~VR~qAv~aL~rlQ-~~~~---d~~v~~~ll~~l~~D~s~eVRraaL~~i~~~------~~tl~----- 192 (1009)
.+..|.+|-.|.||+-.|..|+-+- .-|+ ++..++.+=|.| +|.+.+||+..++.|..- ...+.
T Consensus 291 VFVHRYRDV~~~IRaiCiqeLgiWi~~yP~~Fl~dsYLKYiGWtL-sDk~~~VRl~~lkaL~~L~e~~~~~~~L~lFtsR 369 (1048)
T KOG2011|consen 291 VFVHRYRDVDPDIRAICIQELGIWIKSYPEIFLSDSYLKYIGWTL-SDKNGTVRLRCLKALIKLYEKDEDKDKLELFTSR 369 (1048)
T ss_pred eeeeecccCchHHHHHHHHHHHHHHHhccHHHhcchHHHHhccee-ecCccHHHHHHHHHHHHHHhccccchHHHHHHHH
Confidence 4567899999999999999999985 3343 345677777888 799999999999887642 22333
Q ss_pred ---HHHHhh-CCCChHHHHHHHHHHhccCCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhh
Q 001827 193 ---AIIDCT-LDVSESVRKAAYCVLANKFPLQSLSIKHRTMILKRGLADRSEAVSKECLKLMKDHWLAK 257 (1009)
Q Consensus 193 ---~il~R~-rDv~~~VRr~ay~~L~~~v~~~~lsi~qR~~LL~~GL~Dr~~~Vr~a~~~~L~~~Wl~~ 257 (1009)
-|++-+ ||.+..||......+........|+.+....+.. -+-|+.+.|+.++...|..+-+..
T Consensus 370 FK~RIVeMadrd~~~~Vrav~L~~~~~~~~~g~L~d~di~~Vy~-Li~d~~r~~~~aa~~fl~~k~~~~ 437 (1048)
T KOG2011|consen 370 FKDRIVEMADRDRNVSVRAVGLVLCLLLSSSGLLSDKDILIVYS-LIYDSNRRVAVAAGEFLYKKLFER 437 (1048)
T ss_pred HHHHHHHHHhhhcchhHHHHHHHHHHHHhcccccChhHHHHHHH-HHhccCcchHHHHHHHHHHHhhcc
Confidence 456656 9999999999999877677778898888777776 888999999999999987666653
No 32
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=94.94 E-value=0.57 Score=53.27 Aligned_cols=150 Identities=24% Similarity=0.231 Sum_probs=106.1
Q ss_pred HHHHHHHHhccCCcchhHhHHHHHHHHHhcCCCCCcCCHHHHHHHHHHHHHHhCCCChhHHHHHHHHHhcccCCCCChHH
Q 001827 81 FLKFLLVAAMAANKTARFRACQIISEIIMRLPDDTEVSDEVWDEVIECMKVKVGDKVSVIRTFAVRSLSRFVNDSDNSDI 160 (1009)
Q Consensus 81 ll~~Ll~~~~akdk~VR~R~cqli~~ll~~l~~~~~idedl~~~l~~~ll~Rl~DK~~~VR~qAv~aL~rlQ~~~~d~~v 160 (1009)
.+.-|.......+..||.-+.. .+..++ ++.....+...+.. |....||..|+.+|+++.+. ..
T Consensus 75 av~~l~~~l~d~~~~vr~~a~~----aLg~~~-----~~~a~~~li~~l~~---d~~~~vR~~aa~aL~~~~~~----~a 138 (335)
T COG1413 75 AVPLLRELLSDEDPRVRDAAAD----ALGELG-----DPEAVPPLVELLEN---DENEGVRAAAARALGKLGDE----RA 138 (335)
T ss_pred HHHHHHHHhcCCCHHHHHHHHH----HHHccC-----ChhHHHHHHHHHHc---CCcHhHHHHHHHHHHhcCch----hh
Confidence 3445555667777888888776 555565 33444444444333 89999999999999999522 23
Q ss_pred HHHHHHhcCCC-----------CCHHHHHHHHhhCC--CCcccHHHHHHhhCCCChHHHHHHHHHHhccCCCCCCCHHHH
Q 001827 161 LDLLLEVLPLE-----------QNADVRKTIVLSLP--PSNATSQAIIDCTLDVSESVRKAAYCVLANKFPLQSLSIKHR 227 (1009)
Q Consensus 161 ~~~ll~~l~~D-----------~s~eVRraaL~~i~--~~~~tl~~il~R~rDv~~~VRr~ay~~L~~~v~~~~lsi~qR 227 (1009)
+..++..++.+ +-..||.+++..+. ..+..++.+++.++|-+..||+.+...|+.-.... ..-
T Consensus 139 ~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~~~l~~~~~~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~----~~~ 214 (335)
T COG1413 139 LDPLLEALQDEDSGSAAAALDAALLDVRAAAAEALGELGDPEAIPLLIELLEDEDADVRRAAASALGQLGSEN----VEA 214 (335)
T ss_pred hHHHHHHhccchhhhhhhhccchHHHHHHHHHHHHHHcCChhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch----hhH
Confidence 55566666532 22379999998886 46788999999999999999999999998422211 233
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHH
Q 001827 228 TMILKRGLADRSEAVSKECLKLM 250 (1009)
Q Consensus 228 ~~LL~~GL~Dr~~~Vr~a~~~~L 250 (1009)
...+...+.|.+..||.++...|
T Consensus 215 ~~~l~~~~~~~~~~vr~~~~~~l 237 (335)
T COG1413 215 ADLLVKALSDESLEVRKAALLAL 237 (335)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHh
Confidence 45555688999999998887766
No 33
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=94.85 E-value=0.057 Score=50.80 Aligned_cols=98 Identities=13% Similarity=0.121 Sum_probs=66.4
Q ss_pred HHHHHHHHhccCCcchhHhHHHHHHHHHhcCCCCCcCCHHHHH-HHHHHHHHHhCCCChhHHHHHHHHHhcccCCCCC--
Q 001827 81 FLKFLLVAAMAANKTARFRACQIISEIIMRLPDDTEVSDEVWD-EVIECMKVKVGDKVSVIRTFAVRSLSRFVNDSDN-- 157 (1009)
Q Consensus 81 ll~~Ll~~~~akdk~VR~R~cqli~~ll~~l~~~~~idedl~~-~l~~~ll~Rl~DK~~~VR~qAv~aL~rlQ~~~~d-- 157 (1009)
++.+|+..+...+..+|..++..|..+...-++ .-..+.+ .+...++.-+.|..+.||..|+.+|+.+...+..
T Consensus 8 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~---~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~ 84 (120)
T cd00020 8 GLPALVSLLSSSDENVQREAAWALSNLSAGNND---NIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNK 84 (120)
T ss_pred ChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHH---HHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHH
Confidence 556666666777789999999999987766432 1222222 4566666778899999999999999999644321
Q ss_pred -----hHHHHHHHHhcCCCCCHHHHHHHHh
Q 001827 158 -----SDILDLLLEVLPLEQNADVRKTIVL 182 (1009)
Q Consensus 158 -----~~v~~~ll~~l~~D~s~eVRraaL~ 182 (1009)
..++..++.+|. +.+.+||+.++.
T Consensus 85 ~~~~~~g~l~~l~~~l~-~~~~~~~~~a~~ 113 (120)
T cd00020 85 LIVLEAGGVPKLVNLLD-SSNEDIQKNATG 113 (120)
T ss_pred HHHHHCCChHHHHHHHh-cCCHHHHHHHHH
Confidence 124556666664 456666666654
No 34
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.77 E-value=9.7 Score=47.05 Aligned_cols=208 Identities=18% Similarity=0.223 Sum_probs=123.1
Q ss_pred hHHHHHHHHHHHHHhccCCcchhHhHHHHHHHHHhcCCCCCcCCHHHHHHHHHHHHHHhCCCChhHHHHHHHHHhcccC-
Q 001827 75 DEFLEDFLKFLLVAAMAANKTARFRACQIISEIIMRLPDDTEVSDEVWDEVIECMKVKVGDKVSVIRTFAVRSLSRFVN- 153 (1009)
Q Consensus 75 ~~f~~~ll~~Ll~~~~akdk~VR~R~cqli~~ll~~l~~~~~idedl~~~l~~~ll~Rl~DK~~~VR~qAv~aL~rlQ~- 153 (1009)
++|+..++.|-+..+. ..+--..-..|+.....-.-...+++=+|....-.+-.-|+-.+..||.-|+.-+-.+--
T Consensus 128 ~d~iq~~~~haiha~r---sp~~sk~r~Vl~~F~hqkk~~qgVeeml~rL~~p~l~R~L~a~Ns~VrsnAa~lf~~~fP~ 204 (1005)
T KOG1949|consen 128 NDCIQDFMFHAIHAPR---SPVHSKVREVLSYFHHQKKVRQGVEEMLYRLYKPILWRGLKARNSEVRSNAALLFVEAFPI 204 (1005)
T ss_pred hhHHHHHHHHHhcCCC---ChHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhHHHHHhhccCchhhhhhHHHHHHHhccC
Confidence 4566666666554443 222222223444444433211235555555555555555888999999999998877742
Q ss_pred -CCC----C-hHHH----HHHHHhcCCCCCHHHHHHHHhhC-----------CCC--cccHHHHHHhh-CCCChHHHHHH
Q 001827 154 -DSD----N-SDIL----DLLLEVLPLEQNADVRKTIVLSL-----------PPS--NATSQAIIDCT-LDVSESVRKAA 209 (1009)
Q Consensus 154 -~~~----d-~~v~----~~ll~~l~~D~s~eVRraaL~~i-----------~~~--~~tl~~il~R~-rDv~~~VRr~a 209 (1009)
|++ + +.++ ..|..+| .|+-++||..++.-+ |++ ..-+.+|.+-. .|....||-++
T Consensus 205 ~dpd~~~e~mD~i~~kQf~~l~~LL-~d~~p~VRS~a~~gv~k~~s~fWe~iP~~i~~~ll~kI~d~~a~dt~s~VR~sv 283 (1005)
T KOG1949|consen 205 RDPDLHAEEMDSIIQKQFEELYSLL-EDPYPMVRSTAILGVCKITSKFWEMIPPTILIDLLKKITDELAFDTSSDVRCSV 283 (1005)
T ss_pred CCCCccHHHHHHHHHHHHHHHHHHh-cCCCchHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHhhhccchheehhH
Confidence 121 1 1132 4566677 599999999998543 333 23355566544 79999999999
Q ss_pred HHHHhc--cCCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhh--hcC-CC---HHHHhhhcCcccchHHHHH
Q 001827 210 YCVLAN--KFPLQSLSIKHRTMILKRGLADRSEAVSKECLKLMKDHWLAK--HCN-GN---PIELLKYLDVETYELVGES 281 (1009)
Q Consensus 210 y~~L~~--~v~~~~lsi~qR~~LL~~GL~Dr~~~Vr~a~~~~L~~~Wl~~--~~~-gd---i~~LL~~LDV~~~~~~ae~ 281 (1009)
|.-|-. ..|...--.+|-.--|...|.|.+++||-|+..+|. -+++ .+. .+ .-.+|-+|+.++. .+|..
T Consensus 284 f~gl~~~l~np~sh~~le~~Lpal~~~l~D~se~VRvA~vd~ll--~ik~vra~~f~~I~~~d~~l~~L~~d~~-~v~rr 360 (1005)
T KOG1949|consen 284 FKGLPMILDNPLSHPLLEQLLPALRYSLHDNSEKVRVAFVDMLL--KIKAVRAAKFWKICPMDHILVRLETDSR-PVSRR 360 (1005)
T ss_pred hcCcHHHHcCccchhHHHHHHHhcchhhhccchhHHHHHHHHHH--HHHhhhhhhhhccccHHHHHHHHhcccc-HHHHH
Confidence 995542 233222224555566777889999999999999985 2321 110 11 1345666666543 56766
Q ss_pred HHHHHHhh
Q 001827 282 VMAALLKE 289 (1009)
Q Consensus 282 ~L~~lf~~ 289 (1009)
.+.-+|..
T Consensus 361 ~~~li~~s 368 (1005)
T KOG1949|consen 361 LVSLIFNS 368 (1005)
T ss_pred HHHHHHHh
Confidence 65555553
No 35
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.58 E-value=3.7 Score=51.24 Aligned_cols=208 Identities=19% Similarity=0.257 Sum_probs=135.7
Q ss_pred hhHHHHH-HHHHHHhhCCC-hhhHHHHHHHhhhh----hh--------c-cccCchhhHHHHHHHHHHHhhc--------
Q 001827 17 THNRKLK-DLRAVRSKSPS-TAQFSSAFFKTLTP----LF--------T-VQRRTASAERVVRFVSAFAATN-------- 73 (1009)
Q Consensus 17 ~H~k~~~-~L~~l~~~~~~-~~~F~~~F~~~l~~----iL--------~-~~k~~~~~dRvikFva~f~~~~-------- 73 (1009)
.-||++. -+.+++.+.+. -..|...|.+.+.- || . ++.+....+..=+.+..|+.-.
T Consensus 157 ~irKKA~Lca~r~irK~P~l~e~f~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l~~fr~l~~~lV~iLk~l~~~~y 236 (866)
T KOG1062|consen 157 YIRKKAALCAVRFIRKVPDLVEHFVIAFRKLLCEKHHGVLIAGLHLITELCKISPDALSYFRDLVPSLVKILKQLTNSGY 236 (866)
T ss_pred HHHHHHHHHHHHHHHcCchHHHHhhHHHHHHHhhcCCceeeeHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 3444443 34566666642 35788887776631 11 1 2333334555555566666521
Q ss_pred ---------chHHHHHHHHHHHHHhccCCcchhHhHHHHHHHHHhcCCCCCcCCH-HHHHHHHHHHHHHhCCCChhHHHH
Q 001827 74 ---------NDEFLEDFLKFLLVAAMAANKTARFRACQIISEIIMRLPDDTEVSD-EVWDEVIECMKVKVGDKVSVIRTF 143 (1009)
Q Consensus 74 ---------~~~f~~~ll~~Ll~~~~akdk~VR~R~cqli~~ll~~l~~~~~ide-dl~~~l~~~ll~Rl~DK~~~VR~q 143 (1009)
++.|+.-=+-.+|+.....|...-=--+.+++.+..+...+-.+.. =||+.++..|-. +-++..|+.
T Consensus 237 speydv~gi~dPFLQi~iLrlLriLGq~d~daSd~M~DiLaqvatntdsskN~GnAILYE~V~TI~~I---~~~~~Lrvl 313 (866)
T KOG1062|consen 237 SPEYDVHGISDPFLQIRILRLLRILGQNDADASDLMNDILAQVATNTDSSKNAGNAILYECVRTIMDI---RSNSGLRVL 313 (866)
T ss_pred CCccCccCCCchHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHhc---cCCchHHHH
Confidence 5678887777788888887776665666666666665433222322 288888777743 567889999
Q ss_pred HHHHHhcccCCCCCh-H--HHHHHHHhcCCCCCHHHHHHHHhhCCCCcccHHHHHHhhCCCChHHHHHHHHHHhccCCCC
Q 001827 144 AVRSLSRFVNDSDNS-D--ILDLLLEVLPLEQNADVRKTIVLSLPPSNATSQAIIDCTLDVSESVRKAAYCVLANKFPLQ 220 (1009)
Q Consensus 144 Av~aL~rlQ~~~~d~-~--v~~~ll~~l~~D~s~eVRraaL~~i~~~~~tl~~il~R~rDv~~~VRr~ay~~L~~~v~~~ 220 (1009)
||.+|+||-..++++ . -++.|+..++.||++--|-. ..|+++++|.|..+||-|+.-+-
T Consensus 314 ainiLgkFL~n~d~NirYvaLn~L~r~V~~d~~avqrHr------------~tIleCL~DpD~SIkrralELs~------ 375 (866)
T KOG1062|consen 314 AINILGKFLLNRDNNIRYVALNMLLRVVQQDPTAVQRHR------------STILECLKDPDVSIKRRALELSY------ 375 (866)
T ss_pred HHHHHHHHhcCCccceeeeehhhHHhhhcCCcHHHHHHH------------HHHHHHhcCCcHHHHHHHHHHHH------
Confidence 999999997544433 2 46899999999999866654 45899999999999999987543
Q ss_pred CCCHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhhhcCCC
Q 001827 221 SLSIKHRTMILKRGLADRSEAVSKECLKLMKDHWLAKHCNGN 262 (1009)
Q Consensus 221 ~lsi~qR~~LL~~GL~Dr~~~Vr~a~~~~L~~~Wl~~~~~gd 262 (1009)
.|++ +.+||.-+.+|| .+|++ ++.+
T Consensus 376 --------~lvn------~~Nv~~mv~eLl--~fL~~-~d~~ 400 (866)
T KOG1062|consen 376 --------ALVN------ESNVRVMVKELL--EFLES-SDED 400 (866)
T ss_pred --------HHhc------cccHHHHHHHHH--HHHHh-ccHH
Confidence 2333 567776676766 56663 4433
No 36
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=94.40 E-value=0.1 Score=49.17 Aligned_cols=69 Identities=17% Similarity=0.275 Sum_probs=59.6
Q ss_pred chHHHHHHHHHHHHHhccCCcchhHhHHHHHHHHHhcCCCCCcCCHHHHHHHHHHHHHHhCCCChhHHHHHH
Q 001827 74 NDEFLEDFLKFLLVAAMAANKTARFRACQIISEIIMRLPDDTEVSDEVWDEVIECMKVKVGDKVSVIRTFAV 145 (1009)
Q Consensus 74 ~~~f~~~ll~~Ll~~~~akdk~VR~R~cqli~~ll~~l~~~~~idedl~~~l~~~ll~Rl~DK~~~VR~qAv 145 (1009)
-..+++.+++.++..+...|..|||-+|+-+..|....++ ++ -.-|..|.++|.+.+.|-+++||.-|-
T Consensus 21 ~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~--~~-l~~f~~IF~~L~kl~~D~d~~Vr~~a~ 89 (97)
T PF12755_consen 21 ISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARG--EI-LPYFNEIFDALCKLSADPDENVRSAAE 89 (97)
T ss_pred HHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHH--HH-HHHHHHHHHHHHHHHcCCchhHHHHHH
Confidence 3557899999999999999999999999999999988774 22 236788899999999999999998873
No 37
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=93.84 E-value=27 Score=44.81 Aligned_cols=182 Identities=24% Similarity=0.311 Sum_probs=122.0
Q ss_pred HHHHHhccCCcchhHhHHHHHHHHHhcCCCC-CcCCHHHHHHHHHHHHHHhCCCChhHHHHHHHHHhcccCCCCC---hH
Q 001827 84 FLLVAAMAANKTARFRACQIISEIIMRLPDD-TEVSDEVWDEVIECMKVKVGDKVSVIRTFAVRSLSRFVNDSDN---SD 159 (1009)
Q Consensus 84 ~Ll~~~~akdk~VR~R~cqli~~ll~~l~~~-~~idedl~~~l~~~ll~Rl~DK~~~VR~qAv~aL~rlQ~~~~d---~~ 159 (1009)
.|+..+.++||..||=+| +.+++.+..+ ..+|+|..-++...+++-|-||++.|--.||.+|+-+-.--+. ..
T Consensus 9 ~LlekmtssDKDfRfMAt---sDLm~eLqkdsi~Ld~dSe~kvv~~lLklL~D~ngEVQnlAVKClg~lvsKvke~~le~ 85 (1233)
T KOG1824|consen 9 NLLEKMTSSDKDFRFMAT---SDLMTELQKDSIKLDDDSERKVVKMLLKLLEDKNGEVQNLAVKCLGPLVSKVKEDQLET 85 (1233)
T ss_pred HHHHHccCCCcchhhhhH---HHHHHHHHhhhhhccccchhHHHHHHHHHHhccCcHHHHHHHHHHHHHHhhchHHHHHH
Confidence 688899999999999987 5666666543 3589999999999999999999999999999999998632222 13
Q ss_pred HHHHHHHhc------CCCCCHHHHHHHHhhCCCC------cccHHHHHHhhCCCChH------HHHHHHHHHhc------
Q 001827 160 ILDLLLEVL------PLEQNADVRKTIVLSLPPS------NATSQAIIDCTLDVSES------VRKAAYCVLAN------ 215 (1009)
Q Consensus 160 v~~~ll~~l------~~D~s~eVRraaL~~i~~~------~~tl~~il~R~rDv~~~------VRr~ay~~L~~------ 215 (1009)
+++.|...| .+|-|+===++++.|+||+ +...+.++.+..+-... +|-.+...++.
T Consensus 86 ~ve~L~~~~~s~keq~rdissi~Lktvi~nl~P~~~~~la~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~lsr~g 165 (1233)
T KOG1824|consen 86 IVENLCSNMLSGKEQLRDISSIGLKTVIANLPPSSSSFLAATVCKRITPKLKQAISKQEDVSAIKCEVLDILADVLSRFG 165 (1233)
T ss_pred HHHHHhhhhccchhhhccHHHHHHHHHHhcCCCccccccccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhhc
Confidence 666666664 2455666667888999973 33456666666553333 77776665552
Q ss_pred -cCCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhhhcCCCH-----HHHhhhcCcc
Q 001827 216 -KFPLQSLSIKHRTMILKRGLADRSEAVSKECLKLMKDHWLAKHCNGNP-----IELLKYLDVE 273 (1009)
Q Consensus 216 -~v~~~~lsi~qR~~LL~~GL~Dr~~~Vr~a~~~~L~~~Wl~~~~~gdi-----~~LL~~LDV~ 273 (1009)
-++--+.++ ...+..-|.--..+|||-+.-.| .+-.. .+++++ ..|++.|.--
T Consensus 166 ~ll~~fh~~i---l~~l~~ql~s~R~aVrKkai~~l-~~la~-~~~~~ly~~li~~Ll~~L~~~ 224 (1233)
T KOG1824|consen 166 TLLPNFHLSI---LKCLLPQLQSPRLAVRKKAITAL-GHLAS-SCNRDLYVELIEHLLKGLSNR 224 (1233)
T ss_pred ccCcchHHHH---HHHHhhcccChHHHHHHHHHHHH-HHHHH-hcCHHHHHHHHHHHHhccCCC
Confidence 112122222 34444556666788888777777 34443 566664 3466666543
No 38
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=93.77 E-value=0.056 Score=44.89 Aligned_cols=54 Identities=17% Similarity=0.203 Sum_probs=44.5
Q ss_pred chhHhHHHHHHHHHhcCCCCCcCCHHHHHHHHHHHHHHhCCCChhHHHHHHHHHhcc
Q 001827 95 TARFRACQIISEIIMRLPDDTEVSDEVWDEVIECMKVKVGDKVSVIRTFAVRSLSRF 151 (1009)
Q Consensus 95 ~VR~R~cqli~~ll~~l~~~~~idedl~~~l~~~ll~Rl~DK~~~VR~qAv~aL~rl 151 (1009)
.||..++..|+.+....+ .........+...|...+.|..+.||..|+.||+++
T Consensus 2 ~vR~~A~~aLg~l~~~~~---~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 2 RVRRAAAWALGRLAEGCP---ELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHCTTTTTH---HHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHhhHhcccH---HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 489999998888554444 345567889999999999999999999999999875
No 39
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=93.59 E-value=0.8 Score=55.37 Aligned_cols=170 Identities=19% Similarity=0.220 Sum_probs=110.9
Q ss_pred HHHHHHHHHHHHHhccCCcchhHhHHHHHHHHHhcCCCCCcCCHHHHHHHHHHHHH-HhCCCChhHHHHHHHHHhcccCC
Q 001827 76 EFLEDFLKFLLVAAMAANKTARFRACQIISEIIMRLPDDTEVSDEVWDEVIECMKV-KVGDKVSVIRTFAVRSLSRFVND 154 (1009)
Q Consensus 76 ~f~~~ll~~Ll~~~~akdk~VR~R~cqli~~ll~~l~~~~~idedl~~~l~~~ll~-Rl~DK~~~VR~qAv~aL~rlQ~~ 154 (1009)
..+-.++..++..+..+.+.||-++..-+..++++++.. .+- .+.-.+...|.+ ..+-|. .=+|.+.+|+.-...
T Consensus 212 Pyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~-aVK-~llpsll~~l~~~kWrtK~--aslellg~m~~~ap~ 287 (569)
T KOG1242|consen 212 PYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSAY-AVK-LLLPSLLGSLLEAKWRTKM--ASLELLGAMADCAPK 287 (569)
T ss_pred chHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcc-hhh-HhhhhhHHHHHHHhhhhHH--HHHHHHHHHHHhchH
Confidence 356677888999999999999999999999999998641 111 111122222221 122233 233444444443211
Q ss_pred CC---ChHHHHHHHHhcCCCCCHHHHHHHHhhCCC------C---cccHHHHHHhhCCCChHHHHHHHHHHhccC-C-CC
Q 001827 155 SD---NSDILDLLLEVLPLEQNADVRKTIVLSLPP------S---NATSQAIIDCTLDVSESVRKAAYCVLANKF-P-LQ 220 (1009)
Q Consensus 155 ~~---d~~v~~~ll~~l~~D~s~eVRraaL~~i~~------~---~~tl~~il~R~rDv~~~VRr~ay~~L~~~v-~-~~ 220 (1009)
.- -.+++..+.+.| +|+.+|||+++..+|-. + ..-+|-+++..-|-...+....-.-.+..+ + +.
T Consensus 288 qLs~~lp~iiP~lsevl-~DT~~evr~a~~~~l~~~~svidN~dI~~~ip~Lld~l~dp~~~~~e~~~~L~~ttFV~~V~ 366 (569)
T KOG1242|consen 288 QLSLCLPDLIPVLSEVL-WDTKPEVRKAGIETLLKFGSVIDNPDIQKIIPTLLDALADPSCYTPECLDSLGATTFVAEVD 366 (569)
T ss_pred HHHHHHhHhhHHHHHHH-ccCCHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhcCcccchHHHHHhhcceeeeeeec
Confidence 10 135788888899 59999999999887742 2 245677888888877667766655444333 1 34
Q ss_pred CCCHHHHHHHHHHhhcCCCHHHHHHHHHHH
Q 001827 221 SLSIKHRTMILKRGLADRSEAVSKECLKLM 250 (1009)
Q Consensus 221 ~lsi~qR~~LL~~GL~Dr~~~Vr~a~~~~L 250 (1009)
.-+.+-.+-||++||++|+...++.+...+
T Consensus 367 ~psLalmvpiL~R~l~eRst~~kr~t~~Ii 396 (569)
T KOG1242|consen 367 APSLALMVPILKRGLAERSTSIKRKTAIII 396 (569)
T ss_pred chhHHHHHHHHHHHHhhccchhhhhHHHHH
Confidence 456677899999999999999987666544
No 40
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=93.40 E-value=0.88 Score=55.26 Aligned_cols=148 Identities=17% Similarity=0.298 Sum_probs=98.6
Q ss_pred HhHHHHHHHHHhcCCCCCcCCHHHHHHHHHHHHHHhCCCChhHHHHHHHHHhcccCCCC-------ChHHHHHHHHhcCC
Q 001827 98 FRACQIISEIIMRLPDDTEVSDEVWDEVIECMKVKVGDKVSVIRTFAVRSLSRFVNDSD-------NSDILDLLLEVLPL 170 (1009)
Q Consensus 98 ~R~cqli~~ll~~l~~~~~idedl~~~l~~~ll~Rl~DK~~~VR~qAv~aL~rlQ~~~~-------d~~v~~~ll~~l~~ 170 (1009)
-=+|.+|..++..+. -.++...+...+..=|+...|.||..|+.++.++-..++ +.+++..++.+| .
T Consensus 56 ~~~~~iL~~~l~~~~-----~~~l~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L-~ 129 (503)
T PF10508_consen 56 ELICDILKRLLSALS-----PDSLLPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCL-R 129 (503)
T ss_pred HHHHHHHHHHHhccC-----HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHH-c
Confidence 456788888888764 234467777777777889999999999999999854432 346888899999 5
Q ss_pred CCCHHHHHHHHhh---CCCCcccHHHH--------HHhhCCC-ChHHHHHHHHHHhc--cCCCCCCCHHH---HHHHHHH
Q 001827 171 EQNADVRKTIVLS---LPPSNATSQAI--------IDCTLDV-SESVRKAAYCVLAN--KFPLQSLSIKH---RTMILKR 233 (1009)
Q Consensus 171 D~s~eVRraaL~~---i~~~~~tl~~i--------l~R~rDv-~~~VRr~ay~~L~~--~v~~~~lsi~q---R~~LL~~ 233 (1009)
|+..+|-+.|+.- |..++.-+..+ +...... ++.||.-+|..+.+ +.....+..-. -...+-.
T Consensus 130 ~~d~~Va~~A~~~L~~l~~~~~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~ 209 (503)
T PF10508_consen 130 DPDLSVAKAAIKALKKLASHPEGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLK 209 (503)
T ss_pred CCcHHHHHHHHHHHHHHhCCchhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHH
Confidence 9999999988744 44444333333 5566666 88999999997653 11111111111 1233333
Q ss_pred hhcCCCHHHHHHHHHHHH
Q 001827 234 GLADRSEAVSKECLKLMK 251 (1009)
Q Consensus 234 GL~Dr~~~Vr~a~~~~L~ 251 (1009)
.|.+.|.-||..|..+|.
T Consensus 210 eL~~dDiLvqlnalell~ 227 (503)
T PF10508_consen 210 ELDSDDILVQLNALELLS 227 (503)
T ss_pred HhcCccHHHHHHHHHHHH
Confidence 566666777777776663
No 41
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=93.34 E-value=0.36 Score=59.05 Aligned_cols=115 Identities=20% Similarity=0.195 Sum_probs=88.4
Q ss_pred HHhCCCChhHHHHHHHHHhcccCCCCChHHHHHHHHhcCCCCCHHHHHHHHhhCCC----CcccHHHHHHhhC-CCChHH
Q 001827 131 VKVGDKVSVIRTFAVRSLSRFVNDSDNSDILDLLLEVLPLEQNADVRKTIVLSLPP----SNATSQAIIDCTL-DVSESV 205 (1009)
Q Consensus 131 ~Rl~DK~~~VR~qAv~aL~rlQ~~~~d~~v~~~ll~~l~~D~s~eVRraaL~~i~~----~~~tl~~il~R~r-Dv~~~V 205 (1009)
+-++||+|..|.-.+.+++-=-.+..+..+++.|+..--+|++-+|||+|+..|.. ++.++|.+++-+. --|+-|
T Consensus 526 el~~dkdpilR~~Gm~t~alAy~GTgnnkair~lLh~aVsD~nDDVrRaAVialGFVl~~dp~~~~s~V~lLses~N~HV 605 (929)
T KOG2062|consen 526 ELLRDKDPILRYGGMYTLALAYVGTGNNKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDPEQLPSTVSLLSESYNPHV 605 (929)
T ss_pred HHhcCCchhhhhhhHHHHHHHHhccCchhhHHHhhcccccccchHHHHHHHHHheeeEecChhhchHHHHHHhhhcChhh
Confidence 34789999999998888776555667778899988887889999999999988863 6788888888774 468899
Q ss_pred HHHHHHHHhccCCCCCCCHHHHHHHHHHhhcCCCHHHHHHHH
Q 001827 206 RKAAYCVLANKFPLQSLSIKHRTMILKRGLADRSEAVSKECL 247 (1009)
Q Consensus 206 Rr~ay~~L~~~v~~~~lsi~qR~~LL~~GL~Dr~~~Vr~a~~ 247 (1009)
|-.+-..|+ +-...-....-+.||.--..|...-||+.+.
T Consensus 606 RyGaA~ALG--IaCAGtG~~eAi~lLepl~~D~~~fVRQgAl 645 (929)
T KOG2062|consen 606 RYGAAMALG--IACAGTGLKEAINLLEPLTSDPVDFVRQGAL 645 (929)
T ss_pred hhhHHHHHh--hhhcCCCcHHHHHHHhhhhcChHHHHHHHHH
Confidence 988888776 2222223345567777777788888998764
No 42
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=93.20 E-value=0.96 Score=58.13 Aligned_cols=143 Identities=15% Similarity=0.129 Sum_probs=106.1
Q ss_pred HHHHHHhhhhcccCC----CCHHHHHHHHHHHhhHHhcCCcchHHHHHHHHHHHhh-CChhHHHHHHHHHHHHHHhhCCc
Q 001827 518 SAELLHSLLLPGAKH----VHLDVQRVAIRCLGLFGLLENKPSEELVKQLRLSFVK-GCPTVSIMAGKALIDLGMWHGPQ 592 (1009)
Q Consensus 518 l~~ll~sLIlPaV~~----~~~~VR~~al~CLGL~cLldk~~a~~~~~ll~~~~~~-~~~~vki~ALkaifDlll~hG~~ 592 (1009)
+.|-+-.+|..+++| .+|.++..|..|||=+|.++...+..++++|+..+.+ .++.||.-+.-++.|+...|..
T Consensus 916 lLg~f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~fces~l~llftimeksp~p~IRsN~VvalgDlav~fpn- 994 (1251)
T KOG0414|consen 916 LLGRFAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISAEFCESHLPLLFTIMEKSPSPRIRSNLVVALGDLAVRFPN- 994 (1251)
T ss_pred HHHHHHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCceeeecchheccchhhhccc-
Confidence 445555677777754 5899999999999999999999999999999999986 4589999999999999999943
Q ss_pred hhhhhcccCcCCCCCCCCCCCCCCCCCCCCCccchhHHHHHHHHhhhcccCCCCCCCCchhHHHHHHHHHHHHhhcCCCC
Q 001827 593 EVDKAMGQKDISFQPRNDKMTSSPINLSETDGDLNVELLDLLYAGIVASDRGKYSGDENESIEAVIGEGFAKVLLLSEKY 672 (1009)
Q Consensus 593 ~ld~~~~~~~~~s~~~~~~~~~~~~~~s~~e~~~~~~llklL~~~L~~~~~~~~~~~e~~evq~iaaEGlaKLLL~~~~~ 672 (1009)
.++. ....||..|. ++++.||-.|+--++-|+|++.+.
T Consensus 995 lie~---------------------------------~T~~Ly~rL~---------D~~~~vRkta~lvlshLILndmiK 1032 (1251)
T KOG0414|consen 995 LIEP---------------------------------WTEHLYRRLR---------DESPSVRKTALLVLSHLILNDMIK 1032 (1251)
T ss_pred ccch---------------------------------hhHHHHHHhc---------CccHHHHHHHHHHHHHHHHhhhhH
Confidence 2221 2245666664 478999999999999999998664
Q ss_pred CCCCchhhHHHHHHHHHHhcCCCCcchhHHHHHHHhhhcccc
Q 001827 673 PSIPASLHSLLLAKLINLYFSNESKDLQRLKQCLSIFFEHYA 714 (1009)
Q Consensus 673 ~~~~~~~~~~lLs~LvLlyFnP~t~~n~~LRQcLsvFFp~ya 714 (1009)
- ..-++.+.+..-+| +++.+-.=--||.-.+
T Consensus 1033 V-------KGql~eMA~cl~D~----~~~IsdlAk~FF~Els 1063 (1251)
T KOG0414|consen 1033 V-------KGQLSEMALCLEDP----NAEISDLAKSFFKELS 1063 (1251)
T ss_pred h-------cccHHHHHHHhcCC----cHHHHHHHHHHHHHhh
Confidence 3 34566666666554 3445544444555544
No 43
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.20 E-value=0.95 Score=55.05 Aligned_cols=87 Identities=23% Similarity=0.313 Sum_probs=61.2
Q ss_pred HHHHHHHHhCCCChhHHHHHHHHHhcccCCCCCh------HHHHHHHHhcCCCCCHHHHHHHHhhC-----------CCC
Q 001827 125 VIECMKVKVGDKVSVIRTFAVRSLSRFVNDSDNS------DILDLLLEVLPLEQNADVRKTIVLSL-----------PPS 187 (1009)
Q Consensus 125 l~~~ll~Rl~DK~~~VR~qAv~aL~rlQ~~~~d~------~v~~~ll~~l~~D~s~eVRraaL~~i-----------~~~ 187 (1009)
+.-.+++=.+.-.|.+|..|+.++..|--..... ..++. +..|.+|+++|||+.+=..+ .+.
T Consensus 175 mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~qal~~~iD~Fle~-lFalanD~~~eVRk~vC~alv~Llevr~dkl~ph 253 (885)
T KOG2023|consen 175 MIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQTQALYVHIDKFLEI-LFALANDEDPEVRKNVCRALVFLLEVRPDKLVPH 253 (885)
T ss_pred hHHHHHHHHhCCChhHHHHHHhhhhheeecCcHHHHHHHHHHHHH-HHHHccCCCHHHHHHHHHHHHHHHHhcHHhcccc
Confidence 3444444457889999999999998884222221 12233 45667999999999876443 222
Q ss_pred -cccHHHHHHhhCCCChHHHHHHHHH
Q 001827 188 -NATSQAIIDCTLDVSESVRKAAYCV 212 (1009)
Q Consensus 188 -~~tl~~il~R~rDv~~~VRr~ay~~ 212 (1009)
...+.++|.|++|+|+.|--.|-..
T Consensus 254 l~~IveyML~~tqd~dE~VALEACEF 279 (885)
T KOG2023|consen 254 LDNIVEYMLQRTQDVDENVALEACEF 279 (885)
T ss_pred hHHHHHHHHHHccCcchhHHHHHHHH
Confidence 4678899999999999998777554
No 44
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.04 E-value=2.3 Score=51.21 Aligned_cols=156 Identities=17% Similarity=0.217 Sum_probs=118.8
Q ss_pred HHHHHHHHHHHHhccCCcchhHhHHHHHHHHHhcCCCCCcCCHHHHHHHHHHHHHHhCCCChhHHHHHHHHHhcccCCCC
Q 001827 77 FLEDFLKFLLVAAMAANKTARFRACQIISEIIMRLPDDTEVSDEVWDEVIECMKVKVGDKVSVIRTFAVRSLSRFVNDSD 156 (1009)
Q Consensus 77 f~~~ll~~Ll~~~~akdk~VR~R~cqli~~ll~~l~~~~~idedl~~~l~~~ll~Rl~DK~~~VR~qAv~aL~rlQ~~~~ 156 (1009)
-+..+|.-|...+.+.|..|.--+|-.|+++..+-++. |.--+=-.+.-.+.+.|.-.+++|+.-|+++++.+-.+.+
T Consensus 234 ~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~--iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d 311 (514)
T KOG0166|consen 234 VVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEK--IQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSD 311 (514)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHH--HHHHHHccchHHHHHHHcCCCcccccHHHhhccceeeccH
Confidence 46677888999999999999999999999999887652 3322223445556667888999999999999999865543
Q ss_pred -------ChHHHHHHHHhcCCCCCHHHHHHHHhhCCC-------------CcccHHHHHHhhCCCChHHHHHHHHHHhcc
Q 001827 157 -------NSDILDLLLEVLPLEQNADVRKTIVLSLPP-------------SNATSQAIIDCTLDVSESVRKAAYCVLANK 216 (1009)
Q Consensus 157 -------d~~v~~~ll~~l~~D~s~eVRraaL~~i~~-------------~~~tl~~il~R~rDv~~~VRr~ay~~L~~~ 216 (1009)
|+..+..|..+|..-+...+|+.|...|.. +...+|.++.-+...+-..||.|--.|+.
T Consensus 312 ~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAawaIsN- 390 (514)
T KOG0166|consen 312 EQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAAWAISN- 390 (514)
T ss_pred HHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhccchHHHHHHHHHHHh-
Confidence 345678888899877777799987755432 35788999999988889999999988873
Q ss_pred CCCCCCCHHHHHHHHHHhhc
Q 001827 217 FPLQSLSIKHRTMILKRGLA 236 (1009)
Q Consensus 217 v~~~~lsi~qR~~LL~~GL~ 236 (1009)
.... =+.+|...|+.+|.-
T Consensus 391 ~ts~-g~~~qi~yLv~~giI 409 (514)
T KOG0166|consen 391 LTSS-GTPEQIKYLVEQGII 409 (514)
T ss_pred hccc-CCHHHHHHHHHcCCc
Confidence 2211 237888889888854
No 45
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=92.95 E-value=0.14 Score=42.43 Aligned_cols=46 Identities=22% Similarity=0.398 Sum_probs=35.7
Q ss_pred hhHHHHHHHHHhcccCCCCC------hHHHHHHHHhcCCCCCHHHHHHHHhhC
Q 001827 138 SVIRTFAVRSLSRFVNDSDN------SDILDLLLEVLPLEQNADVRKTIVLSL 184 (1009)
Q Consensus 138 ~~VR~qAv~aL~rlQ~~~~d------~~v~~~ll~~l~~D~s~eVRraaL~~i 184 (1009)
|.||..|+.+|+++.....+ .+++..|+.+| .|++++||.++...|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L-~d~~~~VR~~A~~aL 52 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLL-QDDDDSVRAAAAWAL 52 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHT-TSSSHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHH
Confidence 68999999999998533221 24788888889 588889999998654
No 46
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.63 E-value=35 Score=42.67 Aligned_cols=181 Identities=16% Similarity=0.290 Sum_probs=116.8
Q ss_pred HHHHHHHHHHHHHhccCCcchhHhHHHHHHHHHhcCCCCCcCCHHHHHHHHHHHHHHhCCCChhHHHHHHHHHhcccC-C
Q 001827 76 EFLEDFLKFLLVAAMAANKTARFRACQIISEIIMRLPDDTEVSDEVWDEVIECMKVKVGDKVSVIRTFAVRSLSRFVN-D 154 (1009)
Q Consensus 76 ~f~~~ll~~Ll~~~~akdk~VR~R~cqli~~ll~~l~~~~~idedl~~~l~~~ll~Rl~DK~~~VR~qAv~aL~rlQ~-~ 154 (1009)
++-..|-.-++..+++.-..||-|++-++-.++..-|| .+-. - ...|.++|-|-.|.|-..||..+|.|.- +
T Consensus 140 dLARDLa~Dv~tLL~sskpYvRKkAIl~lykvFLkYPe--Alr~-~----FprL~EkLeDpDp~V~SAAV~VICELArKn 212 (877)
T KOG1059|consen 140 DLARDLADDVFTLLNSSKPYVRKKAILLLYKVFLKYPE--ALRP-C----FPRLVEKLEDPDPSVVSAAVSVICELARKN 212 (877)
T ss_pred hhhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhhH--hHhh-h----HHHHHHhccCCCchHHHHHHHHHHHHHhhC
Confidence 34555556666677888899999999999999998885 2321 2 3455788999999999999999999851 2
Q ss_pred CCCh---------------------------------------HHHHHHHHhcCCCCCH-----HHHHHHHhh-----CC
Q 001827 155 SDNS---------------------------------------DILDLLLEVLPLEQNA-----DVRKTIVLS-----LP 185 (1009)
Q Consensus 155 ~~d~---------------------------------------~v~~~ll~~l~~D~s~-----eVRraaL~~-----i~ 185 (1009)
|++. .+++-+.++|. -++| |+=.+++.- ++
T Consensus 213 PknyL~LAP~ffkllttSsNNWmLIKiiKLF~aLtplEPRLgKKLieplt~li~-sT~AmSLlYECvNTVVa~s~s~g~~ 291 (877)
T KOG1059|consen 213 PQNYLQLAPLFYKLLVTSSNNWVLIKLLKLFAALTPLEPRLGKKLIEPITELME-STVAMSLLYECVNTVVAVSMSSGMS 291 (877)
T ss_pred CcccccccHHHHHHHhccCCCeehHHHHHHHhhccccCchhhhhhhhHHHHHHH-hhHHHHHHHHHHHHheeehhccCCC
Confidence 2221 02223344442 2333 333444433 33
Q ss_pred CCcccHHHHHHhhC----CCChHHHHHHHHHHhc--cCCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhhhc
Q 001827 186 PSNATSQAIIDCTL----DVSESVRKAAYCVLAN--KFPLQSLSIKHRTMILKRGLADRSEAVSKECLKLMKDHWLAKHC 259 (1009)
Q Consensus 186 ~~~~tl~~il~R~r----Dv~~~VRr~ay~~L~~--~v~~~~lsi~qR~~LL~~GL~Dr~~~Vr~a~~~~L~~~Wl~~~~ 259 (1009)
-...++..-+.++| |.|++.+-.....+++ +.|.+.. .++..-+|+ +|.|.|+++|-.+..+| ..-..
T Consensus 292 d~~asiqLCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~V-qa~kdlIlr-cL~DkD~SIRlrALdLl-~gmVs--- 365 (877)
T KOG1059|consen 292 DHSASIQLCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKAV-QAHKDLILR-CLDDKDESIRLRALDLL-YGMVS--- 365 (877)
T ss_pred CcHHHHHHHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHHH-HHhHHHHHH-HhccCCchhHHHHHHHH-HHHhh---
Confidence 34556777777665 8888888766555442 4455443 234444554 99999999999998888 35554
Q ss_pred CCCHHHHhhhc
Q 001827 260 NGNPIELLKYL 270 (1009)
Q Consensus 260 ~gdi~~LL~~L 270 (1009)
+.|+.+..+.|
T Consensus 366 kkNl~eIVk~L 376 (877)
T KOG1059|consen 366 KKNLMEIVKTL 376 (877)
T ss_pred hhhHHHHHHHH
Confidence 45666655443
No 47
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=92.37 E-value=0.55 Score=44.01 Aligned_cols=89 Identities=15% Similarity=0.208 Sum_probs=63.0
Q ss_pred HHHHHHHHhCCCChhHHHHHHHHHhcccCCCCC-------hHHHHHHHHhcCCCCCHHHHHHHHhh---CCCC-------
Q 001827 125 VIECMKVKVGDKVSVIRTFAVRSLSRFVNDSDN-------SDILDLLLEVLPLEQNADVRKTIVLS---LPPS------- 187 (1009)
Q Consensus 125 l~~~ll~Rl~DK~~~VR~qAv~aL~rlQ~~~~d-------~~v~~~ll~~l~~D~s~eVRraaL~~---i~~~------- 187 (1009)
+...+.+-++|..+.+|..|+.+|+.+...... .++++.++.+|. |+++.||+.++.. |..+
T Consensus 8 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~-~~~~~v~~~a~~~L~~l~~~~~~~~~~ 86 (120)
T cd00020 8 GLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLK-SEDEEVVKAALWALRNLAAGPEDNKLI 86 (120)
T ss_pred ChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHh-CCCHHHHHHHHHHHHHHccCcHHHHHH
Confidence 455566667888899999999999999754221 146778888885 6788999887744 3322
Q ss_pred ---cccHHHHHHhhCCCChHHHHHHHHHHh
Q 001827 188 ---NATSQAIIDCTLDVSESVRKAAYCVLA 214 (1009)
Q Consensus 188 ---~~tl~~il~R~rDv~~~VRr~ay~~L~ 214 (1009)
...++.+++.+.+.+..+|+.+...|.
T Consensus 87 ~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~ 116 (120)
T cd00020 87 VLEAGGVPKLVNLLDSSNEDIQKNATGALS 116 (120)
T ss_pred HHHCCChHHHHHHHhcCCHHHHHHHHHHHH
Confidence 345777777777777777777766554
No 48
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=92.18 E-value=4.4 Score=50.24 Aligned_cols=168 Identities=13% Similarity=0.144 Sum_probs=98.5
Q ss_pred chHHHHHHHHHHHHHhccCCcchhHhHHHHHHHHHhcCCC-----------CCcCCHHHHHHHHHHHHHHhCCCChhHHH
Q 001827 74 NDEFLEDFLKFLLVAAMAANKTARFRACQIISEIIMRLPD-----------DTEVSDEVWDEVIECMKVKVGDKVSVIRT 142 (1009)
Q Consensus 74 ~~~f~~~ll~~Ll~~~~akdk~VR~R~cqli~~ll~~l~~-----------~~~idedl~~~l~~~ll~Rl~DK~~~VR~ 142 (1009)
+.+.+..++.++-.-...++..+|--++.-++.+++.... ...+-+++.+.+...+..=...+...-+.
T Consensus 429 t~e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ 508 (618)
T PF01347_consen 429 TEELLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKI 508 (618)
T ss_dssp -HHHHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHH
T ss_pred CHHHHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHH
Confidence 4556666665544333345566777777777777775322 23445555555555555445567778999
Q ss_pred HHHHHHhcccCCCCChHHHHHHHHhcCCC--CCHHHHHHHHhhCCCC-----cccHHHHHHhhCCC--ChHHHHHHHHHH
Q 001827 143 FAVRSLSRFVNDSDNSDILDLLLEVLPLE--QNADVRKTIVLSLPPS-----NATSQAIIDCTLDV--SESVRKAAYCVL 213 (1009)
Q Consensus 143 qAv~aL~rlQ~~~~d~~v~~~ll~~l~~D--~s~eVRraaL~~i~~~-----~~tl~~il~R~rDv--~~~VRr~ay~~L 213 (1009)
-++.||+.+..+ .++..|+..+..+ .+..+|.+|+..+..- ....+.++.-.+|. +..||-+||..|
T Consensus 509 ~~LkaLgN~g~~----~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~~~~v~~~l~~I~~n~~e~~EvRiaA~~~l 584 (618)
T PF01347_consen 509 VYLKALGNLGHP----ESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHCPEKVREILLPIFMNTTEDPEVRIAAYLIL 584 (618)
T ss_dssp HHHHHHHHHT-G----GGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT-HHHHHHHHHHHHH-TTS-HHHHHHHHHHH
T ss_pred HHHHHhhccCCc----hhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcCcHHHHHHHHHHhcCCCCChhHHHHHHHHH
Confidence 999999999632 4677777767544 5889999999998732 23444555444443 466999999998
Q ss_pred hccCCCCCCCHHHHHHHHHHhh-cCCCHHHHHHHHHHH
Q 001827 214 ANKFPLQSLSIKHRTMILKRGL-ADRSEAVSKECLKLM 250 (1009)
Q Consensus 214 ~~~v~~~~lsi~qR~~LL~~GL-~Dr~~~Vr~a~~~~L 250 (1009)
...-| .....+-|.+.| .|++.-|+..+...|
T Consensus 585 m~~~P-----~~~~l~~i~~~l~~E~~~QV~sfv~S~L 617 (618)
T PF01347_consen 585 MRCNP-----SPSVLQRIAQSLWNEPSNQVASFVYSHL 617 (618)
T ss_dssp HHT--------HHHHHHHHHHHTT-S-HHHHHHHHHHH
T ss_pred HhcCC-----CHHHHHHHHHHHhhCchHHHHHHHHHhc
Confidence 83222 223333333444 678888887776655
No 49
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=92.15 E-value=0.71 Score=55.05 Aligned_cols=117 Identities=21% Similarity=0.174 Sum_probs=91.0
Q ss_pred HHHhCCCChhHHHHHHHHHhcccCCCCChHHHHHHHHhcCCCCCHHHHHHHHhhCCC----CcccHHHHHHhhCC-CChH
Q 001827 130 KVKVGDKVSVIRTFAVRSLSRFVNDSDNSDILDLLLEVLPLEQNADVRKTIVLSLPP----SNATSQAIIDCTLD-VSES 204 (1009)
Q Consensus 130 l~Rl~DK~~~VR~qAv~aL~rlQ~~~~d~~v~~~ll~~l~~D~s~eVRraaL~~i~~----~~~tl~~il~R~rD-v~~~ 204 (1009)
.+-++||+|..|.-.+.+++----+..+..++..++..--+|.+-+|||||+..|.. ...+++-+++-+.| -++-
T Consensus 522 ~ell~d~ds~lRy~G~fs~alAy~GTgn~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D~~~lv~tvelLs~shN~h 601 (926)
T COG5116 522 NELLYDKDSILRYNGVFSLALAYVGTGNLGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDDRDLLVGTVELLSESHNFH 601 (926)
T ss_pred HHHhcCchHHhhhccHHHHHHHHhcCCcchhHhhhheeecccCchHHHHHHHHheeeeEecCcchhhHHHHHhhhccchh
Confidence 344899999999999998876555667778999999887899999999999998864 46788888888754 5788
Q ss_pred HHHHHHHHHhccCCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHH
Q 001827 205 VRKAAYCVLANKFPLQSLSIKHRTMILKRGLADRSEAVSKECLK 248 (1009)
Q Consensus 205 VRr~ay~~L~~~v~~~~lsi~qR~~LL~~GL~Dr~~~Vr~a~~~ 248 (1009)
||-.+--.|+ +-...-....-..+|..-..|...-||+++.-
T Consensus 602 VR~g~AvaLG--iacag~G~~~a~diL~~L~~D~~dfVRQ~AmI 643 (926)
T COG5116 602 VRAGVAVALG--IACAGTGDKVATDILEALMYDTNDFVRQSAMI 643 (926)
T ss_pred hhhhhHHHhh--hhhcCCccHHHHHHHHHHhhCcHHHHHHHHHH
Confidence 9988777765 22222233455778888888999999997643
No 50
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=92.10 E-value=2.5 Score=51.43 Aligned_cols=169 Identities=14% Similarity=0.187 Sum_probs=117.0
Q ss_pred hhHHHHHHHHHHHhhc-chHHHHHHHHHHHHHhccCCcchhHhHHHHHHHHHhcCCC--CCcCCHHHHHHHHHHHHHHhC
Q 001827 58 SAERVVRFVSAFAATN-NDEFLEDFLKFLLVAAMAANKTARFRACQIISEIIMRLPD--DTEVSDEVWDEVIECMKVKVG 134 (1009)
Q Consensus 58 ~~dRvikFva~f~~~~-~~~f~~~ll~~Ll~~~~akdk~VR~R~cqli~~ll~~l~~--~~~idedl~~~l~~~ll~Rl~ 134 (1009)
.++=+++.+.+.+... .......+..+|..|+.+.+..||--+|..|..+..+-.. ..-.+.+++..+..+ +.
T Consensus 54 ~v~~~~~iL~~~l~~~~~~~l~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~----L~ 129 (503)
T PF10508_consen 54 QVELICDILKRLLSALSPDSLLPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQC----LR 129 (503)
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHH----Hc
Confidence 4555555555555543 3445788889999999999999999999998888766432 112456666665444 79
Q ss_pred CCChhHHHHHHHHHhcccCCCCChH-H-----HHHHHHhcCCCCCHHHHHHHHhhCC----C---------CcccHHHHH
Q 001827 135 DKVSVIRTFAVRSLSRFVNDSDNSD-I-----LDLLLEVLPLEQNADVRKTIVLSLP----P---------SNATSQAII 195 (1009)
Q Consensus 135 DK~~~VR~qAv~aL~rlQ~~~~d~~-v-----~~~ll~~l~~D~s~eVRraaL~~i~----~---------~~~tl~~il 195 (1009)
|.+..|-..|+.+|.++...+...+ + ...|..++.+ ++..||..++.-+. . +.+-++.++
T Consensus 130 ~~d~~Va~~A~~~L~~l~~~~~~~~~l~~~~~~~~L~~l~~~-~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll 208 (503)
T PF10508_consen 130 DPDLSVAKAAIKALKKLASHPEGLEQLFDSNLLSKLKSLMSQ-SSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLL 208 (503)
T ss_pred CCcHHHHHHHHHHHHHHhCCchhHHHHhCcchHHHHHHHHhc-cCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHH
Confidence 9999999999999999975443222 3 6777777754 57788887774432 1 245688888
Q ss_pred HhhCCCChHHHHHHHHHHhccCCCCCCCHHHHHHHHHHhh
Q 001827 196 DCTLDVSESVRKAAYCVLANKFPLQSLSIKHRTMILKRGL 235 (1009)
Q Consensus 196 ~R~rDv~~~VRr~ay~~L~~~v~~~~lsi~qR~~LL~~GL 235 (1009)
..+.+-|.-||..+...|.+ +- .+..-...|.+.|+
T Consensus 209 ~eL~~dDiLvqlnalell~~-La---~~~~g~~yL~~~gi 244 (503)
T PF10508_consen 209 KELDSDDILVQLNALELLSE-LA---ETPHGLQYLEQQGI 244 (503)
T ss_pred HHhcCccHHHHHHHHHHHHH-HH---cChhHHHHHHhCCH
Confidence 88999888899999887763 11 03333455555554
No 51
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=91.24 E-value=1.3 Score=58.57 Aligned_cols=179 Identities=20% Similarity=0.239 Sum_probs=114.8
Q ss_pred hHHHHHHHHHHHHHhccCCcchhHhHHHHHHHHHhcCCCC----------------C--------------cCCHHHHHH
Q 001827 75 DEFLEDFLKFLLVAAMAANKTARFRACQIISEIIMRLPDD----------------T--------------EVSDEVWDE 124 (1009)
Q Consensus 75 ~~f~~~ll~~Ll~~~~akdk~VR~R~cqli~~ll~~l~~~----------------~--------------~idedl~~~ 124 (1009)
.+++.-+|.+|+.......+..|-=+-.+|..+-.++.+. . .+..++.-.
T Consensus 180 ~e~L~~ll~~lv~~~~~~~~~a~~la~~li~~~a~~~~~~i~~f~~~~~~~~~s~~~~~~~~~he~i~~L~~~~p~ll~~ 259 (1266)
T KOG1525|consen 180 SELLDVLLENLVKPGRDTIKEADKLASDLIERCADNLEDTIANFLNSCLTEYKSRQSSLKIKYHELILELWRIAPQLLLA 259 (1266)
T ss_pred HHHHHHHHHHhccCCCCccHHHHHHHHHHHHHhhhhhchhHHHHHHHHHhhccccccchhhHHHHHHHHHHHhhHHHHHH
Confidence 4677777777777765555555544444443333221110 0 122233334
Q ss_pred HHHHHHHHhCCCChhHHHHHHHHHhcccCCC------CChHHHHHHHHhcCCCCCHHHHHHHHhhCCC----C----ccc
Q 001827 125 VIECMKVKVGDKVSVIRTFAVRSLSRFVNDS------DNSDILDLLLEVLPLEQNADVRKTIVLSLPP----S----NAT 190 (1009)
Q Consensus 125 l~~~ll~Rl~DK~~~VR~qAv~aL~rlQ~~~------~d~~v~~~ll~~l~~D~s~eVRraaL~~i~~----~----~~t 190 (1009)
+.-.|.--|.--.-.+|.+|+.-++++-.++ ..+++..++++.+ +|-+++||.+++.+++. + +..
T Consensus 260 vip~l~~eL~se~~~~Rl~a~~lvg~~~~~~~~~l~~~~~~~~~~fl~r~-~D~~~~vR~~~v~~~~~~l~~~~~~~~~~ 338 (1266)
T KOG1525|consen 260 VIPQLEFELLSEQEEVRLKAVKLVGRMFSDKDSQLSETYDDLWSAFLGRF-NDISVEVRMECVESIKQCLLNNPSIAKAS 338 (1266)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHHHHHhcchhhhcccchHHHHHHHHHh-ccCChhhhhhHHHHhHHHHhcCchhhhHH
Confidence 4445555566666699999999999985443 3467999999999 69999999999977642 1 222
Q ss_pred HHHHHHhhCCCChHHHHHHHHHHhc----cCCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhh
Q 001827 191 SQAIIDCTLDVSESVRKAAYCVLAN----KFPLQSLSIKHRTMILKRGLADRSEAVSKECLKLMKDHWLAK 257 (1009)
Q Consensus 191 l~~il~R~rDv~~~VRr~ay~~L~~----~v~~~~lsi~qR~~LL~~GL~Dr~~~Vr~a~~~~L~~~Wl~~ 257 (1009)
.....-|-||.|+.||...-..+.. ++.+. +... -..++..-+.|+-..||+.|.+-|. .-+++
T Consensus 339 ~~~~~l~~~~~D~~~rir~~v~i~~~~v~~~~l~-~~~~-ll~~~~eR~rDKk~~VR~~Am~~La-qlYk~ 406 (1266)
T KOG1525|consen 339 TILLALRERDLDEDVRVRTQVVIVACDVMKFKLV-YIPL-LLKLVAERLRDKKIKVRKQAMNGLA-QLYKN 406 (1266)
T ss_pred HHHHHHHhhcCChhhhheeeEEEEEeehhHhhhh-hhHH-HHHHHHHHHhhhhHHHHHHHHHHHH-HHHHH
Confidence 3333446688888888765543321 22222 2223 7888888999999999999999985 55554
No 52
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=91.14 E-value=48 Score=41.19 Aligned_cols=69 Identities=19% Similarity=0.292 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHhccCCcchhHhHHHHHHHHHhcCCCCCcCCHHHHHHHHHHHHHHhCCCChhHHHHHHHHHh
Q 001827 78 LEDFLKFLLVAAMAANKTARFRACQIISEIIMRLPDDTEVSDEVWDEVIECMKVKVGDKVSVIRTFAVRSLS 149 (1009)
Q Consensus 78 ~~~ll~~Ll~~~~akdk~VR~R~cqli~~ll~~l~~~~~idedl~~~l~~~ll~Rl~DK~~~VR~qAv~aL~ 149 (1009)
++.++..|...++..+..||-.+|+-+..++...++ .+-.. ...|.+.|+.|.+|-.-+|-..|-.-..
T Consensus 213 iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~d--kl~ph-l~~IveyML~~tqd~dE~VALEACEFwl 281 (885)
T KOG2023|consen 213 IDKFLEILFALANDEDPEVRKNVCRALVFLLEVRPD--KLVPH-LDNIVEYMLQRTQDVDENVALEACEFWL 281 (885)
T ss_pred HHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHH--hcccc-hHHHHHHHHHHccCcchhHHHHHHHHHH
Confidence 556677788888999999999999999999998765 22222 3578999999999999999988865433
No 53
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=91.00 E-value=5.9 Score=51.38 Aligned_cols=124 Identities=18% Similarity=0.279 Sum_probs=78.9
Q ss_pred hhHHHHHHHHHHHhhcchHHHHHHHHHHHHHhccCCcchhHhHHHHHHHHHhcCCCCCc---CCHHHHHHHHHHHHHHhC
Q 001827 58 SAERVVRFVSAFAATNNDEFLEDFLKFLLVAAMAANKTARFRACQIISEIIMRLPDDTE---VSDEVWDEVIECMKVKVG 134 (1009)
Q Consensus 58 ~~dRvikFva~f~~~~~~~f~~~ll~~Ll~~~~akdk~VR~R~cqli~~ll~~l~~~~~---idedl~~~l~~~ll~Rl~ 134 (1009)
..+.+-.|+..+... -..+.-..+..|+...+......|-=+.++++.++...-.+.+ ...++-+.+.+.+.+|++
T Consensus 291 g~k~v~~fL~elS~~-~P~l~~~~l~~lv~lld~es~~lRnavlei~~n~V~~~l~d~e~~~~sk~~r~~~le~l~erl~ 369 (1251)
T KOG0414|consen 291 GPKIVGNFLVELSER-VPKLMLRQLTLLVDLLDSESYTLRNAVLEICANLVASELRDEELEEMSKSLRDELLELLRERLL 369 (1251)
T ss_pred chhhHHHHHHHHHHH-hHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHHHhh
Confidence 344555666665432 1112333344445566777788888888888887776433233 344577778899999999
Q ss_pred CCChhHHHHHHHHHhcccCCCC-C----hHHHHHHHHhcCCCCCHHHHHHHHhh
Q 001827 135 DKVSVIRTFAVRSLSRFVNDSD-N----SDILDLLLEVLPLEQNADVRKTIVLS 183 (1009)
Q Consensus 135 DK~~~VR~qAv~aL~rlQ~~~~-d----~~v~~~ll~~l~~D~s~eVRraaL~~ 183 (1009)
|-.|-||..+.....++.+... . .+|+...+..++ |.|.=|||.|++=
T Consensus 370 Dvsa~vRskVLqv~~~l~~~~s~p~~~~~eV~~la~grl~-DkSslVRk~Ai~L 422 (1251)
T KOG0414|consen 370 DVSAYVRSKVLQVFRRLFQQHSIPLGSRTEVLELAIGRLE-DKSSLVRKNAIQL 422 (1251)
T ss_pred cccHHHHHHHHHHHHHHHHccCCCccHHHHHHHHHhcccc-cccHHHHHHHHHH
Confidence 9999999999999999853322 1 245555555553 6666666666543
No 54
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=90.99 E-value=3.4 Score=54.63 Aligned_cols=132 Identities=20% Similarity=0.286 Sum_probs=99.1
Q ss_pred HHHHHHHHHHHhccCCcchhHhHHHHHHHHHhcCCCCCcCCHHHHHHHHHHHHHHhCCCChhHHHHHHHHHhcccCCCCC
Q 001827 78 LEDFLKFLLVAAMAANKTARFRACQIISEIIMRLPDDTEVSDEVWDEVIECMKVKVGDKVSVIRTFAVRSLSRFVNDSDN 157 (1009)
Q Consensus 78 ~~~ll~~Ll~~~~akdk~VR~R~cqli~~ll~~l~~~~~idedl~~~l~~~ll~Rl~DK~~~VR~qAv~aL~rlQ~~~~d 157 (1009)
++..+++++.+....--++|-+|..+|+.|...=+. .-... .+..+.-.|+.|-..+||-.|+--++||--...+
T Consensus 814 fD~yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~-vL~~~----dvq~~Vh~R~~DssasVREAaldLvGrfvl~~~e 888 (1692)
T KOG1020|consen 814 FDPYLKLILSVLGENAIALRTKALKCLSMIVEADPS-VLSRP----DVQEAVHGRLNDSSASVREAALDLVGRFVLSIPE 888 (1692)
T ss_pred hHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhcChH-hhcCH----HHHHHHHHhhccchhHHHHHHHHHHhhhhhccHH
Confidence 456688899999999999999999999998765331 01133 4577788999999999999999999999522111
Q ss_pred --hHHHHHHHHhcCCCCCHHHHHHHHhhCC------CC----cccHHHHHHhhCCCChHHHHHHHHHHhc
Q 001827 158 --SDILDLLLEVLPLEQNADVRKTIVLSLP------PS----NATSQAIIDCTLDVSESVRKAAYCVLAN 215 (1009)
Q Consensus 158 --~~v~~~ll~~l~~D~s~eVRraaL~~i~------~~----~~tl~~il~R~rDv~~~VRr~ay~~L~~ 215 (1009)
..+.+.+..-+ .|++-.||+-|++-+- ++ ....-.||.|.-|-...|-++|...+.+
T Consensus 889 ~~~qyY~~i~erI-lDtgvsVRKRvIKIlrdic~e~pdf~~i~~~cakmlrRv~DEEg~I~kLv~etf~k 957 (1692)
T KOG1020|consen 889 LIFQYYDQIIERI-LDTGVSVRKRVIKILRDICEETPDFSKIVDMCAKMLRRVNDEEGNIKKLVRETFLK 957 (1692)
T ss_pred HHHHHHHHHHhhc-CCCchhHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHhccchhHHHHHHHHHHHH
Confidence 23566666666 6999999999995441 22 2234567889999988899999888774
No 55
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=90.94 E-value=59 Score=41.92 Aligned_cols=162 Identities=18% Similarity=0.146 Sum_probs=103.5
Q ss_pred HHHHHHHHHHHhhccccccccCCCccHHHHHHhhhhcccCCCCHHHHHHHHHHHhhHHhcCCcchHHHHHHHHHHHhhCC
Q 001827 492 MHSLAVTGLLLENAKSFHLIQGKPAESAELLHSLLLPGAKHVHLDVQRVAIRCLGLFGLLENKPSEELVKQLRLSFVKGC 571 (1009)
Q Consensus 492 lrCL~i~~~lLe~v~~~~~l~~~~~~l~~ll~sLIlPaV~~~~~~VR~~al~CLGL~cLldk~~a~~~~~ll~~~~~~~~ 571 (1009)
+=|+...+++=... ..+...-+..+|+.+..|++.+|+..|--.||-.+.=+ -..|++.+...+.. +
T Consensus 837 vfa~LslGElgr~~---------~~s~~~e~~~~iieaf~sp~edvksAAs~ALGsl~vgn---l~~yLpfil~qi~s-q 903 (1233)
T KOG1824|consen 837 VFALLSLGELGRRK---------DLSPQNELKDTIIEAFNSPSEDVKSAASYALGSLAVGN---LPKYLPFILEQIES-Q 903 (1233)
T ss_pred HHHHhhhhhhccCC---------CCCcchhhHHHHHHHcCCChHHHHHHHHHHhhhhhcCc---hHhHHHHHHHHHhc-c
Confidence 45666666653322 12333445568899999999999999999999776532 34677777776654 5
Q ss_pred hhHHHHHHHHHHHHHHhhCCchhhhhcccCcCCCCCCCCCCCCCCCCCCCCCccchhHHHHHHHHhhhcccCCCCCCCCc
Q 001827 572 PTVSIMAGKALIDLGMWHGPQEVDKAMGQKDISFQPRNDKMTSSPINLSETDGDLNVELLDLLYAGIVASDRGKYSGDEN 651 (1009)
Q Consensus 572 ~~vki~ALkaifDlll~hG~~~ld~~~~~~~~~s~~~~~~~~~~~~~~s~~e~~~~~~llklL~~~L~~~~~~~~~~~e~ 651 (1009)
+.=|..-|+.+--++.+-.... . . .....|..+|.+-.+ +..
T Consensus 904 pk~QyLLLhSlkevi~~~svd~------~--~---------------------~~v~~IW~lL~k~cE---------~~e 945 (1233)
T KOG1824|consen 904 PKRQYLLLHSLKEVIVSASVDG------L--K---------------------PYVEKIWALLFKHCE---------CAE 945 (1233)
T ss_pred hHhHHHHHHHHHHHHHHhccch------h--h---------------------hhHHHHHHHHHHhcc---------cch
Confidence 5556656666655555543210 0 0 025677888876554 345
Q ss_pred hhHHHHHHHHHHHHhhcCCCCCCCCchhhHHHHHHHHHHhcCCCCcc-------------------hhHHHHHHHhhhcc
Q 001827 652 ESIEAVIGEGFAKVLLLSEKYPSIPASLHSLLLAKLINLYFSNESKD-------------------LQRLKQCLSIFFEH 712 (1009)
Q Consensus 652 ~evq~iaaEGlaKLLL~~~~~~~~~~~~~~~lLs~LvLlyFnP~t~~-------------------n~~LRQcLsvFFp~ 712 (1009)
...|.+.+|.|.||.+.. ...++-+|=...=++...- ++-++||+|-|+-.
T Consensus 946 egtR~vvAECLGkL~l~e----------pesLlpkL~~~~~S~a~~~rs~vvsavKfsisd~p~~id~~lk~~ig~fl~~ 1015 (1233)
T KOG1824|consen 946 EGTRNVVAECLGKLVLIE----------PESLLPKLKLLLRSEASNTRSSVVSAVKFSISDQPQPIDPLLKQQIGDFLKL 1015 (1233)
T ss_pred hhhHHHHHHHhhhHHhCC----------hHHHHHHHHHHhcCCCcchhhhhhheeeeeecCCCCccCHHHHHHHHHHHHH
Confidence 667999999999998843 2455555554444433221 45699999999866
Q ss_pred cc
Q 001827 713 YA 714 (1009)
Q Consensus 713 ya 714 (1009)
+-
T Consensus 1016 ~~ 1017 (1233)
T KOG1824|consen 1016 LR 1017 (1233)
T ss_pred Hh
Confidence 54
No 56
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=90.53 E-value=68 Score=41.91 Aligned_cols=152 Identities=21% Similarity=0.258 Sum_probs=97.8
Q ss_pred HHHHHHHHHHHHHhccCCcchhHhHHHHHHHHHhcCCCCCcCCHHHHHHHHHHHHHHhCCCC-hhHHHHHHHHHhcccCC
Q 001827 76 EFLEDFLKFLLVAAMAANKTARFRACQIISEIIMRLPDDTEVSDEVWDEVIECMKVKVGDKV-SVIRTFAVRSLSRFVND 154 (1009)
Q Consensus 76 ~f~~~ll~~Ll~~~~akdk~VR~R~cqli~~ll~~l~~~~~idedl~~~l~~~ll~Rl~DK~-~~VR~qAv~aL~rlQ~~ 154 (1009)
+.++.+++||+.+...+|..|||-++.-+..+.+.+| -+|.+.+..+.++-+.=-+ ++.=.-|..||+.+..-
T Consensus 337 eivE~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp------~~Lad~vi~svid~~~p~e~~~aWHgacLaLAELA~r 410 (1133)
T KOG1943|consen 337 EIVEFVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLP------PELADQVIGSVIDLFNPAEDDSAWHGACLALAELALR 410 (1133)
T ss_pred HHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHccCc------HHHHHHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhc
Confidence 5788999999999999999999999999999999998 3455555555555333333 56666888999888632
Q ss_pred CC-----ChHHHHHHHHhcCCCCCHHHHHHHHhhCCCCcccHHHHHHhhCCCChHHHHHH-HH--HHhccCCCCCCCH--
Q 001827 155 SD-----NSDILDLLLEVLPLEQNADVRKTIVLSLPPSNATSQAIIDCTLDVSESVRKAA-YC--VLANKFPLQSLSI-- 224 (1009)
Q Consensus 155 ~~-----d~~v~~~ll~~l~~D~s~eVRraaL~~i~~~~~tl~~il~R~rDv~~~VRr~a-y~--~L~~~v~~~~lsi-- 224 (1009)
.- =.+|+..++..|.+|..- = .+=+-..||-+| |- .++.......+..
T Consensus 411 GlLlps~l~dVvplI~kaL~Yd~~~----G------------------~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l 468 (1133)
T KOG1943|consen 411 GLLLPSLLEDVVPLILKALHYDVRR----G------------------QHSVGQHVRDAACYVCWAFARAYSPSDLKPVL 468 (1133)
T ss_pred CCcchHHHHHHHHHHHHHhhhhhhh----c------------------ccccccchHHHHHHHHHHHHhcCChhhhhHHH
Confidence 21 135777777777665432 0 011122333322 22 1221222222221
Q ss_pred -HHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHh
Q 001827 225 -KHRTMILKRGLADRSEAVSKECLKLMKDHWLA 256 (1009)
Q Consensus 225 -~qR~~LL~~GL~Dr~~~Vr~a~~~~L~~~Wl~ 256 (1009)
.--..||-.++-||+-++|.|+...|. .=+-
T Consensus 469 ~~L~s~LL~~AlFDrevncRRAAsAAlq-E~VG 500 (1133)
T KOG1943|consen 469 QSLASALLIVALFDREVNCRRAASAALQ-ENVG 500 (1133)
T ss_pred HHHHHHHHHHHhcCchhhHhHHHHHHHH-HHhc
Confidence 122478888999999999999998884 4443
No 57
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=90.19 E-value=5.3 Score=45.57 Aligned_cols=115 Identities=17% Similarity=0.212 Sum_probs=70.8
Q ss_pred hhHHHHHHHhhhhhhc--cccCchhhHHHHHHHHHHHhh-cchHHHHHHHHHHHHHhccCCcchhHhHHHHHHHHHhcCC
Q 001827 36 AQFSSAFFKTLTPLFT--VQRRTASAERVVRFVSAFAAT-NNDEFLEDFLKFLLVAAMAANKTARFRACQIISEIIMRLP 112 (1009)
Q Consensus 36 ~~F~~~F~~~l~~iL~--~~k~~~~~dRvikFva~f~~~-~~~~f~~~ll~~Ll~~~~akdk~VR~R~cqli~~ll~~l~ 112 (1009)
..|.+.+.+++..+.. .+.|+...+.+++.+...+.. .-......|+..+++.+.-....=+..+++++..+.-.+|
T Consensus 39 ~~~e~~L~~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg 118 (309)
T PF05004_consen 39 EDLEDKLKEAIDLLTEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLG 118 (309)
T ss_pred hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcC
Confidence 3555556666655542 233445555555555443321 1122234456666666654443556778999999988877
Q ss_pred CCCcCCHHHHHHHHHHHHHHhCCCCh--hHHHHHHHHHhcc
Q 001827 113 DDTEVSDEVWDEVIECMKVKVGDKVS--VIRTFAVRSLSRF 151 (1009)
Q Consensus 113 ~~~~idedl~~~l~~~ll~Rl~DK~~--~VR~qAv~aL~rl 151 (1009)
.. .-.+++|+.+...|..-+.|... .+|..++.||+-.
T Consensus 119 ~g-~~~~ei~~~~~~~L~~~l~d~s~~~~~R~~~~~aLai~ 158 (309)
T PF05004_consen 119 AG-EDSEEIFEELKPVLKRILTDSSASPKARAACLEALAIC 158 (309)
T ss_pred CC-ccHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHHH
Confidence 32 23668999999999988998864 5777777676664
No 58
>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms]
Probab=89.75 E-value=2.4 Score=48.98 Aligned_cols=103 Identities=22% Similarity=0.303 Sum_probs=68.8
Q ss_pred hhHHHHHHHHHHHhhcchHHHHHHHHHHHHHhccCCcchhHhHHHHHHHHHhcCCCCCcCCHHHHHHHHHHHHHHhCCCC
Q 001827 58 SAERVVRFVSAFAATNNDEFLEDFLKFLLVAAMAANKTARFRACQIISEIIMRLPDDTEVSDEVWDEVIECMKVKVGDKV 137 (1009)
Q Consensus 58 ~~dRvikFva~f~~~~~~~f~~~ll~~Ll~~~~akdk~VR~R~cqli~~ll~~l~~~~~idedl~~~l~~~ll~Rl~DK~ 137 (1009)
.+|++++|-.....+.+..=-..=-+-++.+.....|.-|.- .|+|-..+.+.|+ + -+...++-++-.-|-+
T Consensus 3 ~ie~ly~~~e~l~~a~dk~q~v~~y~~il~~~k~~~k~k~la-sq~ip~~fk~fp~---l----a~~a~da~~d~~ed~d 74 (460)
T KOG2213|consen 3 NIEKLYEFYEILSEATDKSQHVDDYEGILKAVKGTSKEKRLA-SQFIPRFFKHFPS---L----ADEAIDAQLDLCEDDD 74 (460)
T ss_pred hHHHHHHHHHHHHhhchhhhhHHHHHHHHHHhhcchHHHHHH-HHHHHHHHhhCch---h----hhHHHHhhhccccccc
Confidence 577888887666554322100011234666777777888886 7899999999983 4 4445666677789999
Q ss_pred hhHHHHHHHHHhcccCCCCChHHHHHHHHhc
Q 001827 138 SVIRTFAVRSLSRFVNDSDNSDILDLLLEVL 168 (1009)
Q Consensus 138 ~~VR~qAv~aL~rlQ~~~~d~~v~~~ll~~l 168 (1009)
..||.|||..|-.|+.++--..+...|..+|
T Consensus 75 ~~ir~qaik~lp~fc~~d~~~rv~d~l~qLL 105 (460)
T KOG2213|consen 75 VGIRRQAIKGLPLFCKGDALSRVNDVLVQLL 105 (460)
T ss_pred hhhHHHHHhccchhccCchhhhhHHHHHHHH
Confidence 9999999999999987732223444444444
No 59
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=88.91 E-value=34 Score=42.16 Aligned_cols=168 Identities=16% Similarity=0.125 Sum_probs=96.9
Q ss_pred chHHHHHHHHHHHHHhccCCcchhHhHHHHHHHHHhcCCCCCc-----CCHHHHHHHHHHHHHHhCCCChhHHHHHHHHH
Q 001827 74 NDEFLEDFLKFLLVAAMAANKTARFRACQIISEIIMRLPDDTE-----VSDEVWDEVIECMKVKVGDKVSVIRTFAVRSL 148 (1009)
Q Consensus 74 ~~~f~~~ll~~Ll~~~~akdk~VR~R~cqli~~ll~~l~~~~~-----idedl~~~l~~~ll~Rl~DK~~~VR~qAv~aL 148 (1009)
+.+.+..++.++-..-.-+...+|--++.-.+.+++....+.. +=+++.+.+...+..-..++....+.-++.||
T Consensus 391 t~~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaL 470 (574)
T smart00638 391 TEEILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKAL 470 (574)
T ss_pred CHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhh
Confidence 4556666665544333334556777777778888876543221 11345555555544444566777788889999
Q ss_pred hcccCCCCChHHHHHHHHhcC--CCCCHHHHHHHHhhCCC----C-cccHHHHHHhhC--CCChHHHHHHHHHHhccCCC
Q 001827 149 SRFVNDSDNSDILDLLLEVLP--LEQNADVRKTIVLSLPP----S-NATSQAIIDCTL--DVSESVRKAAYCVLANKFPL 219 (1009)
Q Consensus 149 ~rlQ~~~~d~~v~~~ll~~l~--~D~s~eVRraaL~~i~~----~-~~tl~~il~R~r--Dv~~~VRr~ay~~L~~~v~~ 219 (1009)
+.+..+ .++..|.-.++ .+.+..+|.+|+..+.. . ....+.++.-.. +-+..||-+||..|.+.-|
T Consensus 471 GN~g~~----~~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~v~~~l~~i~~n~~e~~EvRiaA~~~lm~t~P- 545 (574)
T smart00638 471 GNAGHP----SSIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPRKVQEVLLPIYLNRAEPPEVRMAAVLVLMETKP- 545 (574)
T ss_pred hccCCh----hHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCC-
Confidence 988532 33444444444 34567899998877751 2 233333344333 4567799999998873222
Q ss_pred CCCCHHHHHHHHHHhhcCCCHHHHHHHHHH
Q 001827 220 QSLSIKHRTMILKRGLADRSEAVSKECLKL 249 (1009)
Q Consensus 220 ~~lsi~qR~~LL~~GL~Dr~~~Vr~a~~~~ 249 (1009)
+...-..|...--.|.+.-|+..+...
T Consensus 546 ---~~~~l~~ia~~l~~E~~~QV~sfv~S~ 572 (574)
T smart00638 546 ---SVALLQRIAELLNKEPNLQVASFVYSH 572 (574)
T ss_pred ---CHHHHHHHHHHHhhcCcHHHHHHhHHh
Confidence 223333444434457777787665443
No 60
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.89 E-value=50 Score=41.79 Aligned_cols=208 Identities=15% Similarity=0.261 Sum_probs=119.4
Q ss_pred hhhHHHHHHHHHHHhhc-----------chHHHHHHHHHHHHHhccCCcchhHhHHHHHHHHHhcCCCCCcCCHHHHHHH
Q 001827 57 ASAERVVRFVSAFAATN-----------NDEFLEDFLKFLLVAAMAANKTARFRACQIISEIIMRLPDDTEVSDEVWDEV 125 (1009)
Q Consensus 57 ~~~dRvikFva~f~~~~-----------~~~f~~~ll~~Ll~~~~akdk~VR~R~cqli~~ll~~l~~~~~idedl~~~l 125 (1009)
|.++|+++|=-.|+..+ ..+++..|+.--...+..|+..|=..+.+++..+...-++ .-+-|..+
T Consensus 145 peVe~Ll~~~~~~irKKA~Lca~r~irK~P~l~e~f~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~----~l~~fr~l 220 (866)
T KOG1062|consen 145 PEVERLLQHRDPYIRKKAALCAVRFIRKVPDLVEHFVIAFRKLLCEKHHGVLIAGLHLITELCKISPD----ALSYFRDL 220 (866)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHcCchHHHHhhHHHHHHHhhcCCceeeeHHHHHHHHHhcCHH----HHHHHHHH
Confidence 56778887755555432 4456666666666777888899999999999988876543 22356667
Q ss_pred HHHHHHHhCC---------------CChhHHHHHHHHHhcccCCCCC-hHHHHHHHHh--cCCCCCHHHHHHHHhh----
Q 001827 126 IECMKVKVGD---------------KVSVIRTFAVRSLSRFVNDSDN-SDILDLLLEV--LPLEQNADVRKTIVLS---- 183 (1009)
Q Consensus 126 ~~~ll~Rl~D---------------K~~~VR~qAv~aL~rlQ~~~~d-~~v~~~ll~~--l~~D~s~eVRraaL~~---- 183 (1009)
...+..+|++ -.|-.-++..+-|.-|-+++.| .+....++.- =..|+|..|=.|||--
T Consensus 221 ~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLriLGq~d~daSd~M~DiLaqvatntdsskN~GnAILYE~V~T 300 (866)
T KOG1062|consen 221 VPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLRILGQNDADASDLMNDILAQVATNTDSSKNAGNAILYECVRT 300 (866)
T ss_pred HHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhcccccccchhHHHHHHHHH
Confidence 7777777644 3577888888888877433322 2222222211 1346666666666511
Q ss_pred ---CCCCcccH---HHHHHhh-CCCChHHHHHHHHHHhccCCCC-CCCHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHH
Q 001827 184 ---LPPSNATS---QAIIDCT-LDVSESVRKAAYCVLANKFPLQ-SLSIKHRTMILKRGLADRSEAVSKECLKLMKDHWL 255 (1009)
Q Consensus 184 ---i~~~~~tl---~~il~R~-rDv~~~VRr~ay~~L~~~v~~~-~lsi~qR~~LL~~GL~Dr~~~Vr~a~~~~L~~~Wl 255 (1009)
|-++..-. -.||.|- .--|.++|-.+...|..-++.. ..-...|..++. +|+|.|.++|+-+-+++. .-.
T Consensus 301 I~~I~~~~~LrvlainiLgkFL~n~d~NirYvaLn~L~r~V~~d~~avqrHr~tIle-CL~DpD~SIkrralELs~-~lv 378 (866)
T KOG1062|consen 301 IMDIRSNSGLRVLAINILGKFLLNRDNNIRYVALNMLLRVVQQDPTAVQRHRSTILE-CLKDPDVSIKRRALELSY-ALV 378 (866)
T ss_pred HHhccCCchHHHHHHHHHHHHhcCCccceeeeehhhHHhhhcCCcHHHHHHHHHHHH-HhcCCcHHHHHHHHHHHH-HHh
Confidence 11111100 0111111 2223344444444444333221 122334678887 999999999999999873 555
Q ss_pred hhhcCCCH----HHHhhhcCcc
Q 001827 256 AKHCNGNP----IELLKYLDVE 273 (1009)
Q Consensus 256 ~~~~~gdi----~~LL~~LDV~ 273 (1009)
+ ..|+ -+||++|+..
T Consensus 379 n---~~Nv~~mv~eLl~fL~~~ 397 (866)
T KOG1062|consen 379 N---ESNVRVMVKELLEFLESS 397 (866)
T ss_pred c---cccHHHHHHHHHHHHHhc
Confidence 3 3354 4566666654
No 61
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=88.61 E-value=11 Score=47.02 Aligned_cols=233 Identities=18% Similarity=0.277 Sum_probs=148.7
Q ss_pred HHHHHHHhhhhhhhHHHH-HHHHHHHhhCCChhhHHHHHHHhhhhhhccccCchhhHHHHHHHHHHHhhc----------
Q 001827 5 AKILDESRTSYATHNRKL-KDLRAVRSKSPSTAQFSSAFFKTLTPLFTVQRRTASAERVVRFVSAFAATN---------- 73 (1009)
Q Consensus 5 ~~iF~~aQ~s~~~H~k~~-~~L~~l~~~~~~~~~F~~~F~~~l~~iL~~~k~~~~~dRvikFva~f~~~~---------- 73 (1009)
.++..+.+.+=.+-+|.. +.|.++.+. =+..|..++..+|.-.+.... .+.+++..-.+
T Consensus 4 ~~~le~tlSpD~n~~~~Ae~~l~~~~~~------nf~~F~~~Ls~vl~n~~~~~~----~R~~AGL~LKN~L~akd~~~k 73 (859)
T KOG1241|consen 4 LELLEKTLSPDQNVRKRAEKQLEQAQSQ------NFPQFLVLLSEVLANDNSSDV----ARMAAGLQLKNSLTAKDPERK 73 (859)
T ss_pred HHHHHHHcCCCcchHHHHHHHHHHHHhc------cHHHHHHHHHHHHhccCCcHH----HHHHHhHHHhhhhccCCHHHH
Confidence 345556666666777777 446555432 236788888888865444332 33444443211
Q ss_pred ----------chHHHHHHHHHHHHHhccCCcchhHhHHHHHHHHHhcCCCCCcCCHHHHHHHHHHHHHHhCCCChh-HHH
Q 001827 74 ----------NDEFLEDFLKFLLVAAMAANKTARFRACQIISEIIMRLPDDTEVSDEVWDEVIECMKVKVGDKVSV-IRT 142 (1009)
Q Consensus 74 ----------~~~f~~~ll~~Ll~~~~akdk~VR~R~cqli~~ll~~l~~~~~idedl~~~l~~~ll~Rl~DK~~~-VR~ 142 (1009)
..+--+.+=.++++.+.+....++--+-|+|+.|-.- ||...+|-.+...|..-+.+-.|. |+.
T Consensus 74 ~~~~qRWl~l~~e~reqVK~~il~tL~~~ep~~~s~Aaq~va~IA~~-----ElP~n~wp~li~~lv~nv~~~~~~~~k~ 148 (859)
T KOG1241|consen 74 QQYQQRWLQLPAEIREQVKNNILRTLGSPEPRRPSSAAQCVAAIACI-----ELPQNQWPELIVTLVSNVGEEQASMVKE 148 (859)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHcCCCCCCccchHHHHHHHHHHh-----hCchhhCHHHHHHHHHhcccccchHHHH
Confidence 2234445556788888888888888888999887653 688899999999999999999988 999
Q ss_pred HHHHHHhcccCCCCCh-------HHH-HHHHHhcCCCCCHHHHHHHHhhCCCC----c----------ccHHHHHHhhCC
Q 001827 143 FAVRSLSRFVNDSDNS-------DIL-DLLLEVLPLEQNADVRKTIVLSLPPS----N----------ATSQAIIDCTLD 200 (1009)
Q Consensus 143 qAv~aL~rlQ~~~~d~-------~v~-~~ll~~l~~D~s~eVRraaL~~i~~~----~----------~tl~~il~R~rD 200 (1009)
.+..||+.++++-+.. +++ ....-.....+|+.||-+++.++..+ + --+..+.|-|.=
T Consensus 149 ~slealGyice~i~pevl~~~sN~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~nF~~E~ern~iMqvvcEatq~ 228 (859)
T KOG1241|consen 149 SSLEALGYICEDIDPEVLEQQSNDILTAIVQGMRKEETSAAVRLAALNALYNSLEFTKANFNNEMERNYIMQVVCEATQS 228 (859)
T ss_pred HHHHHHHHHHccCCHHHHHHHHhHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHHhhccHhhhceeeeeeeecccC
Confidence 9999999998664432 233 33344557899999999999877543 1 123344555665
Q ss_pred CChHHHHHHHHHHhccCC--CCCCC--HHH-HHHHHHHhhcCCCHHHHHHHHHHHHHHHHh
Q 001827 201 VSESVRKAAYCVLANKFP--LQSLS--IKH-RTMILKRGLADRSEAVSKECLKLMKDHWLA 256 (1009)
Q Consensus 201 v~~~VRr~ay~~L~~~v~--~~~ls--i~q-R~~LL~~GL~Dr~~~Vr~a~~~~L~~~Wl~ 256 (1009)
-|..||.+||.-|-+-+. .+.+- ..+ -..+=-.++..-++.|.-.+ + .-|=.
T Consensus 229 ~d~~i~~aa~~ClvkIm~LyY~~m~~yM~~alfaitl~amks~~deValQa---i-EFWst 285 (859)
T KOG1241|consen 229 PDEEIQVAAFQCLVKIMSLYYEFMEPYMEQALFAITLAAMKSDNDEVALQA---I-EFWST 285 (859)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHH---H-HHHHH
Confidence 678899999886553111 11111 111 22333346666666665333 2 56764
No 62
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=88.37 E-value=3.3 Score=50.78 Aligned_cols=181 Identities=12% Similarity=0.159 Sum_probs=109.4
Q ss_pred HHHHHHHhccCCcchhHhHHHHHHHHHhcCCCCCcCCHH---HHHHHHHHHHHHhCCCChhHHHHHHHHHhcccCCCC--
Q 001827 82 LKFLLVAAMAANKTARFRACQIISEIIMRLPDDTEVSDE---VWDEVIECMKVKVGDKVSVIRTFAVRSLSRFVNDSD-- 156 (1009)
Q Consensus 82 l~~Ll~~~~akdk~VR~R~cqli~~ll~~l~~~~~ided---l~~~l~~~ll~Rl~DK~~~VR~qAv~aL~rlQ~~~~-- 156 (1009)
..++....++..-..|--..-+.+.++.+...+.+.-+. -...+...+.+|+.|-.|-+|..|+..+.++.+-+.
T Consensus 301 ~~~~~~LLdses~tlRc~~~EicaN~V~~~~~d~qm~e~~~~~~~~Lv~ll~ERl~D~~py~RtKalqv~~kifdl~sk~ 380 (1128)
T COG5098 301 YEHFDELLDSESFTLRCCFLEICANLVEHFKKDGQMVEHYKQKLNDLVGLLVERLSDTYPYTRTKALQVLEKIFDLNSKT 380 (1128)
T ss_pred HHHHHHHhcccchhHHHHHHHHHHHHHHHHhcchhhHhhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHhCcccc
Confidence 567777888877777777677778888877654455442 345678889999999999999999999999975443
Q ss_pred C---hHHHHHHHHhcCCCCCHHHHHHHHhhCCCCcccHHHHHHhhCCCChHHHHHHHHHHhccCCCCCCCHHHHHHHHHH
Q 001827 157 N---SDILDLLLEVLPLEQNADVRKTIVLSLPPSNATSQAIIDCTLDVSESVRKAAYCVLANKFPLQSLSIKHRTMILKR 233 (1009)
Q Consensus 157 d---~~v~~~ll~~l~~D~s~eVRraaL~~i~~~~~tl~~il~R~rDv~~~VRr~ay~~L~~~v~~~~lsi~qR~~LL~~ 233 (1009)
+ .++++.....++ |.|.-|||.+++=...---+-|+-. --....|+..|.+=.. ....|--. |+-
T Consensus 381 ~~~r~ev~~lv~r~lq-Drss~VRrnaikl~SkLL~~HPF~~----~h~~~l~~~~wek~L~------~~E~qlNs-lk~ 448 (1128)
T COG5098 381 VGRRHEVIRLVGRRLQ-DRSSVVRRNAIKLCSKLLMRHPFAS----EHGSQLRLTLWEKNLG------SAENQLNS-LKS 448 (1128)
T ss_pred cchHHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHhcCChhh----hccchhhhHHHHhhcc------hhHhHhhc-cch
Confidence 2 368888888886 8999999988754321111111111 1123455566654221 11122222 333
Q ss_pred hh----cCCCHHHHH---HHHHHHHHHHHhhhcCCCHHHHhhhcCcccc
Q 001827 234 GL----ADRSEAVSK---ECLKLMKDHWLAKHCNGNPIELLKYLDVETY 275 (1009)
Q Consensus 234 GL----~Dr~~~Vr~---a~~~~L~~~Wl~~~~~gdi~~LL~~LDV~~~ 275 (1009)
|+ .|.+..|-+ .|+.+|-++.-+ ....-+..-+++.|-.+.
T Consensus 449 ~~qe~l~D~E~Eveqd~~q~~t~le~~~n~-~~es~ien~ve~ina~~t 496 (1128)
T COG5098 449 GLQETLCDGEKEVEQDEGQCRTELEGSFNK-SAESRIENEVENINATNT 496 (1128)
T ss_pred hhhccccchHHhhhhhhhhhhhhhcccccc-chhhhhhhhhhccccccH
Confidence 44 677666652 455555333322 223334444566665443
No 63
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=88.32 E-value=2.3 Score=52.30 Aligned_cols=126 Identities=17% Similarity=0.176 Sum_probs=79.0
Q ss_pred HHHHHHHHHHHHhccCCcchhHhHHHHHHHHHhcCCCCCcCCHHHHHHHHHHHHHHhCCCChhHHHHHHHHHhcccCCCC
Q 001827 77 FLEDFLKFLLVAAMAANKTARFRACQIISEIIMRLPDDTEVSDEVWDEVIECMKVKVGDKVSVIRTFAVRSLSRFVNDSD 156 (1009)
Q Consensus 77 f~~~ll~~Ll~~~~akdk~VR~R~cqli~~ll~~l~~~~~idedl~~~l~~~ll~Rl~DK~~~VR~qAv~aL~rlQ~~~~ 156 (1009)
++.++.+.|-.+...++...+ ++.-+.|+++|.. .....+...+. .-....+.||.+||.||.++- ...
T Consensus 443 ~~~~l~~~l~~~~~~~~~~~~----~~~LkaLGN~g~~-----~~i~~l~~~l~-~~~~~~~~iR~~Av~Alr~~a-~~~ 511 (574)
T smart00638 443 LLKYLHELLQQAVSKGDEEEI----QLYLKALGNAGHP-----SSIKVLEPYLE-GAEPLSTFIRLAAILALRNLA-KRD 511 (574)
T ss_pred HHHHHHHHHHHHHhcCCchhe----eeHHHhhhccCCh-----hHHHHHHHhcC-CCCCCCHHHHHHHHHHHHHHH-HhC
Confidence 444555555444444444433 3444555666631 11122222221 123445789999999999883 222
Q ss_pred ChHHHHHHHHhc-CCCCCHHHHHHHHhhCCCC---cccHHHHHHhh-CCCChHHHHHHHHHH
Q 001827 157 NSDILDLLLEVL-PLEQNADVRKTIVLSLPPS---NATSQAIIDCT-LDVSESVRKAAYCVL 213 (1009)
Q Consensus 157 d~~v~~~ll~~l-~~D~s~eVRraaL~~i~~~---~~tl~~il~R~-rDv~~~VRr~ay~~L 213 (1009)
+..+.+.|+.+. ..+..+|||.+|+.-+..+ ...+..|...+ +|-+.-|+.-+|+.|
T Consensus 512 p~~v~~~l~~i~~n~~e~~EvRiaA~~~lm~t~P~~~~l~~ia~~l~~E~~~QV~sfv~S~l 573 (574)
T smart00638 512 PRKVQEVLLPIYLNRAEPPEVRMAAVLVLMETKPSVALLQRIAELLNKEPNLQVASFVYSHI 573 (574)
T ss_pred chHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCCHHHHHHHHHHHhhcCcHHHHHHhHHhh
Confidence 334566666655 4478899999999887654 45678888888 799999999999876
No 64
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=88.27 E-value=10 Score=46.18 Aligned_cols=166 Identities=18% Similarity=0.084 Sum_probs=101.7
Q ss_pred HHHHHHHhccCCcchhHh-HHHHHHHHHhcCCCCCcCCHHHHHHHHHHHHHHhCCCChhHHHHHHHHHhcccCCCCC---
Q 001827 82 LKFLLVAAMAANKTARFR-ACQIISEIIMRLPDDTEVSDEVWDEVIECMKVKVGDKVSVIRTFAVRSLSRFVNDSDN--- 157 (1009)
Q Consensus 82 l~~Ll~~~~akdk~VR~R-~cqli~~ll~~l~~~~~idedl~~~l~~~ll~Rl~DK~~~VR~qAv~aL~rlQ~~~~d--- 157 (1009)
+.-|-.....|...-|-+ +.+.......++|.. ...- .-.+.-.++.-..||.+.||-.|..|.--++.--..
T Consensus 176 l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~~--~EPy-iv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~aV 252 (569)
T KOG1242|consen 176 LDNLSKAIIDKKSALNREAALLAFEAAQGNLGPP--FEPY-IVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSAYAV 252 (569)
T ss_pred HHHHHHHhcccchhhcHHHHHHHHHHHHHhcCCC--CCch-HHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcchh
Confidence 334444455555555554 455555566667731 1111 223455667778999999999999888777632221
Q ss_pred hHHHHHHHHhcCCCCCHHHHHHHHhhC-------CC-----CcccHHHHHHhhCCCChHHHHHHHHHHhccC-CCCCCCH
Q 001827 158 SDILDLLLEVLPLEQNADVRKTIVLSL-------PP-----SNATSQAIIDCTLDVSESVRKAAYCVLANKF-PLQSLSI 224 (1009)
Q Consensus 158 ~~v~~~ll~~l~~D~s~eVRraaL~~i-------~~-----~~~tl~~il~R~rDv~~~VRr~ay~~L~~~v-~~~~lsi 224 (1009)
..++..++.-|..+ .|.=..+++.-+ |. -+.-+|.+.+++.|.++.||++++..|.+-. -+++-.|
T Consensus 253 K~llpsll~~l~~~-kWrtK~aslellg~m~~~ap~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~dI 331 (569)
T KOG1242|consen 253 KLLLPSLLGSLLEA-KWRTKMASLELLGAMADCAPKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPDI 331 (569)
T ss_pred hHhhhhhHHHHHHH-hhhhHHHHHHHHHHHHHhchHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccHHH
Confidence 12333333333323 444444444322 11 1567899999999999999999999876311 2345557
Q ss_pred HHHHHHHHHhhcCCCHHHHHHHHHHHH
Q 001827 225 KHRTMILKRGLADRSEAVSKECLKLMK 251 (1009)
Q Consensus 225 ~qR~~LL~~GL~Dr~~~Vr~a~~~~L~ 251 (1009)
.-+.-.|-.|+.|.+..+.+....+..
T Consensus 332 ~~~ip~Lld~l~dp~~~~~e~~~~L~~ 358 (569)
T KOG1242|consen 332 QKIIPTLLDALADPSCYTPECLDSLGA 358 (569)
T ss_pred HHHHHHHHHHhcCcccchHHHHHhhcc
Confidence 777777777999999888855544443
No 65
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=87.13 E-value=11 Score=48.86 Aligned_cols=163 Identities=17% Similarity=0.237 Sum_probs=119.1
Q ss_pred HHHHHHHHhccCCcchhHhHHHHHHHHHhcCCCCCcCCHHHHHHHHHHHHHHhCCCChhHHHHHHHHHhcccCC---CCC
Q 001827 81 FLKFLLVAAMAANKTARFRACQIISEIIMRLPDDTEVSDEVWDEVIECMKVKVGDKVSVIRTFAVRSLSRFVND---SDN 157 (1009)
Q Consensus 81 ll~~Ll~~~~akdk~VR~R~cqli~~ll~~l~~~~~idedl~~~l~~~ll~Rl~DK~~~VR~qAv~aL~rlQ~~---~~d 157 (1009)
-|..|+..+-+.|..||-++...++.+...-+ +-.-|..-+ -.-..|.||.-|+.-+-|+-.. .-+
T Consensus 5 ~l~qLl~~l~spDn~vr~~Ae~~l~~~~~~~~----~l~~L~~i~-------~~~~~p~~Rq~aaVl~Rkl~~~~w~~l~ 73 (1075)
T KOG2171|consen 5 PLEQLLQQLLSPDNEVRRQAEEALETLAKTEP----LLPALAHIL-------ATSADPQVRQLAAVLLRKLLTKHWSRLS 73 (1075)
T ss_pred HHHHHHHHhcCCCchHHHHHHHHHHHhhcccc----hHHHHHHHH-------hcCCChHHHHHHHHHHHHHHHHHhhcCC
Confidence 45677888889999999999988887655433 222222222 2458899999998888777531 112
Q ss_pred ----hHHHHHHHHhcCCCCCHHHHHHHHh-------hCCC--CcccHHHHHHhhCCCChHHHHHHHHHHhccCC-CC--C
Q 001827 158 ----SDILDLLLEVLPLEQNADVRKTIVL-------SLPP--SNATSQAIIDCTLDVSESVRKAAYCVLANKFP-LQ--S 221 (1009)
Q Consensus 158 ----~~v~~~ll~~l~~D~s~eVRraaL~-------~i~~--~~~tl~~il~R~rDv~~~VRr~ay~~L~~~v~-~~--~ 221 (1009)
..+...++.++++.+.+.||+.+-. ++-+ .+.-++.+...+.+.++..|..|+..|.. ++ .. .
T Consensus 74 ~e~~~siks~lL~~~~~E~~~~vr~k~~dviAeia~~~l~e~WPell~~L~q~~~S~~~~~rE~al~il~s-~~~~~~~~ 152 (1075)
T KOG2171|consen 74 AEVQQSIKSSLLEIIQSETEPSVRHKLADVIAEIARNDLPEKWPELLQFLFQSTKSPNPSLRESALLILSS-LPETFGNT 152 (1075)
T ss_pred HHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccchHHHHHHHHHHhcCCCcchhHHHHHHHHh-hhhhhccc
Confidence 2477889999999999999997642 2222 57889999999999999999999998873 32 11 1
Q ss_pred CC--HHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHh
Q 001827 222 LS--IKHRTMILKRGLADRSEAVSKECLKLMKDHWLA 256 (1009)
Q Consensus 222 ls--i~qR~~LL~~GL~Dr~~~Vr~a~~~~L~~~Wl~ 256 (1009)
++ +..-..|+.+|++|-+..||-++.+.+ .+...
T Consensus 153 ~~~~~~~l~~lf~q~~~d~s~~vr~~a~rA~-~a~~~ 188 (1075)
T KOG2171|consen 153 LQPHLDDLLRLFSQTMTDPSSPVRVAAVRAL-GAFAE 188 (1075)
T ss_pred cchhHHHHHHHHHHhccCCcchHHHHHHHHH-HHHHH
Confidence 11 345678899999999988999999988 47665
No 66
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.93 E-value=18 Score=43.74 Aligned_cols=165 Identities=16% Similarity=0.233 Sum_probs=119.7
Q ss_pred HHHHHHHHhccCCcchhHhHHHHHHHHHhcCCCCCcCCHHHHHHHHHHHHHHh-CCCChhHHHHHHHHHhcccCCCC---
Q 001827 81 FLKFLLVAAMAANKTARFRACQIISEIIMRLPDDTEVSDEVWDEVIECMKVKV-GDKVSVIRTFAVRSLSRFVNDSD--- 156 (1009)
Q Consensus 81 ll~~Ll~~~~akdk~VR~R~cqli~~ll~~l~~~~~idedl~~~l~~~ll~Rl-~DK~~~VR~qAv~aL~rlQ~~~~--- 156 (1009)
.+.-++....+.+..-++++.+-+..++..-.. ..|++-+...+...+.+=+ ++..|.+|..|+-||..+..+..
T Consensus 67 ~~~~~~~~~~S~~~~~q~~a~~~~rkllS~~~~-ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T 145 (514)
T KOG0166|consen 67 NLELMLAALYSDDPQQQLTATQAFRKLLSKERN-PPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQT 145 (514)
T ss_pred hhHHHHHHHhCCCHHHHHHHHHHHHHHHccCCC-CCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhc
Confidence 367788889999999999999999999987654 4677666666655555555 68899999999999999976543
Q ss_pred ----ChHHHHHHHHhcCCCCCHHHHHHHHhhC---CCC----------cccHHHHHHhhCCCC--hHHHHHHHH--HHhc
Q 001827 157 ----NSDILDLLLEVLPLEQNADVRKTIVLSL---PPS----------NATSQAIIDCTLDVS--ESVRKAAYC--VLAN 215 (1009)
Q Consensus 157 ----d~~v~~~ll~~l~~D~s~eVRraaL~~i---~~~----------~~tl~~il~R~rDv~--~~VRr~ay~--~L~~ 215 (1009)
++..+-.|+.++ ..|+++||..++..| +.. ..-++.++.-.-..+ ..+|.++|. .|..
T Consensus 146 ~~vv~agavp~fi~Ll-~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcr 224 (514)
T KOG0166|consen 146 KVVVDAGAVPIFIQLL-SSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCR 224 (514)
T ss_pred cccccCCchHHHHHHh-cCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHc
Confidence 334677789888 489999999988655 333 345555565554444 477777776 3432
Q ss_pred -cCCCCCC-CHHHHHHHHHHhhcCCCHHHHHHHH
Q 001827 216 -KFPLQSL-SIKHRTMILKRGLADRSEAVSKECL 247 (1009)
Q Consensus 216 -~v~~~~l-si~qR~~LL~~GL~Dr~~~Vr~a~~ 247 (1009)
+-|.-.+ .++.-...|-++|...|+.|..-+.
T Consensus 225 gk~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~ 258 (514)
T KOG0166|consen 225 GKNPSPPFDVVAPILPALLRLLHSTDEEVLTDAC 258 (514)
T ss_pred CCCCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 3344333 3566778888999999999985443
No 67
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=86.58 E-value=0.85 Score=33.58 Aligned_cols=25 Identities=16% Similarity=0.170 Sum_probs=17.0
Q ss_pred HHHHHHhCCCChhHHHHHHHHHhcc
Q 001827 127 ECMKVKVGDKVSVIRTFAVRSLSRF 151 (1009)
Q Consensus 127 ~~ll~Rl~DK~~~VR~qAv~aL~rl 151 (1009)
..+++-+.|.+|.||..|+.+|+.+
T Consensus 3 p~l~~~l~D~~~~VR~~a~~~l~~i 27 (31)
T PF02985_consen 3 PILLQLLNDPSPEVRQAAAECLGAI 27 (31)
T ss_dssp HHHHHHHT-SSHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 4556667777777777777777765
No 68
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.39 E-value=16 Score=45.88 Aligned_cols=159 Identities=19% Similarity=0.173 Sum_probs=84.4
Q ss_pred HHHHHHHHHHHhccCCcchhHhHHHHHHHHHhcCCCCCcCCHHHHHHHHHHHHHHhCCCChhHHHHHHHHHhcccCCCCC
Q 001827 78 LEDFLKFLLVAAMAANKTARFRACQIISEIIMRLPDDTEVSDEVWDEVIECMKVKVGDKVSVIRTFAVRSLSRFVNDSDN 157 (1009)
Q Consensus 78 ~~~ll~~Ll~~~~akdk~VR~R~cqli~~ll~~l~~~~~idedl~~~l~~~ll~Rl~DK~~~VR~qAv~aL~rlQ~~~~d 157 (1009)
+..+|--..+...++|--|+-=+---+-.--..=++-+-++- ..+.+-|+|++|.||+.|.++|+-+.-+-..
T Consensus 69 vS~~Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqpdLALLSI-------ntfQk~L~DpN~LiRasALRvlSsIRvp~Ia 141 (968)
T KOG1060|consen 69 VSLLFPAVVKNVASKNIEVKKLVYVYLLRYAEEQPDLALLSI-------NTFQKALKDPNQLIRASALRVLSSIRVPMIA 141 (968)
T ss_pred HHHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcCCCceeeeH-------HHHHhhhcCCcHHHHHHHHHHHHhcchhhHH
Confidence 444555555566666666654322222222222233334453 3344448999999999999999887532111
Q ss_pred hHHHHHHHHhcCCCCCHHHHHHHHhhCCCCcccHHHHHHhhCCCChHHHHHHHHHHhccCCCCCCCHHHHHHHHHHhhcC
Q 001827 158 SDILDLLLEVLPLEQNADVRKTIVLSLPPSNATSQAIIDCTLDVSESVRKAAYCVLANKFPLQSLSIKHRTMILKRGLAD 237 (1009)
Q Consensus 158 ~~v~~~ll~~l~~D~s~eVRraaL~~i~~~~~tl~~il~R~rDv~~~VRr~ay~~L~~~v~~~~lsi~qR~~LL~~GL~D 237 (1009)
+=+.-+.-++ ..|+|+-||+.|...|| +-..++.=-..|.+.+|+.-|.|
T Consensus 142 PI~llAIk~~-~~D~s~yVRk~AA~AIp-----------------------------KLYsLd~e~k~qL~e~I~~LLaD 191 (968)
T KOG1060|consen 142 PIMLLAIKKA-VTDPSPYVRKTAAHAIP-----------------------------KLYSLDPEQKDQLEEVIKKLLAD 191 (968)
T ss_pred HHHHHHHHHH-hcCCcHHHHHHHHHhhH-----------------------------HHhcCChhhHHHHHHHHHHHhcC
Confidence 1111222222 35666666666665554 22222111124778889999999
Q ss_pred CCHHHHHHHHHH---HHHHHHhhhcCCCHHHHhhhc-Cccc
Q 001827 238 RSEAVSKECLKL---MKDHWLAKHCNGNPIELLKYL-DVET 274 (1009)
Q Consensus 238 r~~~Vr~a~~~~---L~~~Wl~~~~~gdi~~LL~~L-DV~~ 274 (1009)
|++-|--++.-. +|+.-++ ...+++-++-..| ||+.
T Consensus 192 ~splVvgsAv~AF~evCPerld-LIHknyrklC~ll~dvde 231 (968)
T KOG1060|consen 192 RSPLVVGSAVMAFEEVCPERLD-LIHKNYRKLCRLLPDVDE 231 (968)
T ss_pred CCCcchhHHHHHHHHhchhHHH-HhhHHHHHHHhhccchhh
Confidence 999888665433 2333343 3345555555544 5644
No 69
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=86.37 E-value=2.2 Score=40.28 Aligned_cols=81 Identities=19% Similarity=0.251 Sum_probs=57.7
Q ss_pred hhHhHHHHHHHHHhcCCCCCcCCHHHHHHHHHHHHHHhCCCChhHHHHHHHHHhcccCCCCC------hHHHHHHHHhcC
Q 001827 96 ARFRACQIISEIIMRLPDDTEVSDEVWDEVIECMKVKVGDKVSVIRTFAVRSLSRFVNDSDN------SDILDLLLEVLP 169 (1009)
Q Consensus 96 VR~R~cqli~~ll~~l~~~~~idedl~~~l~~~ll~Rl~DK~~~VR~qAv~aL~rlQ~~~~d------~~v~~~ll~~l~ 169 (1009)
.|.....-|+.+--.++.. -.+.++.|..-++.=+.|.++.||-.|..||..+...-.+ .++.+.|..++
T Consensus 2 ~R~ggli~Laa~ai~l~~~---~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~- 77 (97)
T PF12755_consen 2 YRKGGLIGLAAVAIALGKD---ISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLS- 77 (97)
T ss_pred chhHHHHHHHHHHHHchHh---HHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 4777777788888888852 4567788999999999999999999999999988522111 13444444444
Q ss_pred CCCCHHHHHHH
Q 001827 170 LEQNADVRKTI 180 (1009)
Q Consensus 170 ~D~s~eVRraa 180 (1009)
.|+.+.||.++
T Consensus 78 ~D~d~~Vr~~a 88 (97)
T PF12755_consen 78 ADPDENVRSAA 88 (97)
T ss_pred cCCchhHHHHH
Confidence 46666666654
No 70
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=86.29 E-value=15 Score=41.43 Aligned_cols=135 Identities=14% Similarity=0.174 Sum_probs=81.0
Q ss_pred HhHHHHHHHHHhcCCCCCcCCHHH--HHHHHHHHHHHhCCCChhHHHHHHHHHhcccCCCCC--hHHHHHHHHhcCCCCC
Q 001827 98 FRACQIISEIIMRLPDDTEVSDEV--WDEVIECMKVKVGDKVSVIRTFAVRSLSRFVNDSDN--SDILDLLLEVLPLEQN 173 (1009)
Q Consensus 98 ~R~cqli~~ll~~l~~~~~idedl--~~~l~~~ll~Rl~DK~~~VR~qAv~aL~rlQ~~~~d--~~v~~~ll~~l~~D~s 173 (1009)
.||..++..++.+... .+++.. -.-+...++.=++-.++.||..|+.+|+-+.--+++ .+.+..|+..++.| .
T Consensus 1 lkcL~i~~~lL~~~~~--~~~~~~~l~~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a~~~l~l~~~~~~~~-~ 77 (298)
T PF12719_consen 1 LKCLSITQSLLENVSS--SLSPNISLESLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKELAKEHLPLFLQALQKD-D 77 (298)
T ss_pred CcHHHHHHHHHHhccc--cCCCcchHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHhC-C
Confidence 3778888888888763 343321 122333334558889999999999999998643332 35667788888777 8
Q ss_pred HHHHHHHHhhCCCCcccHHHHHHhhCCCChHHHHHHHHHHhccCCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHHHH
Q 001827 174 ADVRKTIVLSLPPSNATSQAIIDCTLDVSESVRKAAYCVLANKFPLQSLSIKHRTMILKRGLADRSEAVSKECLKLMK 251 (1009)
Q Consensus 174 ~eVRraaL~~i~~~~~tl~~il~R~rDv~~~VRr~ay~~L~~~v~~~~lsi~qR~~LL~~GL~Dr~~~Vr~a~~~~L~ 251 (1009)
.+||-.+++.|- +.++..-.+. +..-. -+-..-....-..++...|.+.++.|+.++..-++
T Consensus 78 ~~v~~~al~~l~------Dll~~~g~~~--------~~~~~--~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~ 139 (298)
T PF12719_consen 78 EEVKITALKALF------DLLLTHGIDI--------FDSES--DNDESVDSKSLLKILTKFLDSENPELQAIAVEGLC 139 (298)
T ss_pred HHHHHHHHHHHH------HHHHHcCchh--------ccchh--ccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 999999987652 1111110000 00000 00012223444667777777778788877776665
No 71
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=86.05 E-value=0.68 Score=34.12 Aligned_cols=23 Identities=30% Similarity=0.520 Sum_probs=13.1
Q ss_pred HHHHHHhcCCCCCHHHHHHHHhhC
Q 001827 161 LDLLLEVLPLEQNADVRKTIVLSL 184 (1009)
Q Consensus 161 ~~~ll~~l~~D~s~eVRraaL~~i 184 (1009)
+..++.++ +|++++||.+++.++
T Consensus 2 lp~l~~~l-~D~~~~VR~~a~~~l 24 (31)
T PF02985_consen 2 LPILLQLL-NDPSPEVRQAAAECL 24 (31)
T ss_dssp HHHHHHHH-T-SSHHHHHHHHHHH
T ss_pred HHHHHHHc-CCCCHHHHHHHHHHH
Confidence 34455555 377777777766554
No 72
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=85.57 E-value=5.2 Score=51.04 Aligned_cols=122 Identities=22% Similarity=0.253 Sum_probs=82.1
Q ss_pred hccCCcchhHhHHHHHHHHHhcCCCCCcCCHHHHHHHHHHHHHHhCCCChhHHHHHHHHHhcccCCCCChHHHHHHHHhc
Q 001827 89 AMAANKTARFRACQIISEIIMRLPDDTEVSDEVWDEVIECMKVKVGDKVSVIRTFAVRSLSRFVNDSDNSDILDLLLEVL 168 (1009)
Q Consensus 89 ~~akdk~VR~R~cqli~~ll~~l~~~~~idedl~~~l~~~ll~Rl~DK~~~VR~qAv~aL~rlQ~~~~d~~v~~~ll~~l 168 (1009)
..-.|.+|=.-+.|+|..|-..++. .....-..+...+++|+.||.+.+|-.++.|+-.+-+...-..+.+..+..+
T Consensus 304 ~kDaN~~v~~~aa~~l~~ia~~lr~---~~~~~~~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns~~l~~~~~~I~e~l 380 (815)
T KOG1820|consen 304 LKDANINVVMLAAQILELIAKKLRP---LFRKYAKNVFPSLLDRLKEKKSELRDALLKALDAILNSTPLSKMSEAILEAL 380 (815)
T ss_pred ccCcchhHHHHHHHHHHHHHHhcch---hhHHHHHhhcchHHHHhhhccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHh
Confidence 3445566677778888888888884 4666777788999999999999999999999888865333334556656666
Q ss_pred CCCCCHHHHHHHH-------hhCC---CC----cccHHHHHHhhCCCChHHHHHHHHHHh
Q 001827 169 PLEQNADVRKTIV-------LSLP---PS----NATSQAIIDCTLDVSESVRKAAYCVLA 214 (1009)
Q Consensus 169 ~~D~s~eVRraaL-------~~i~---~~----~~tl~~il~R~rDv~~~VRr~ay~~L~ 214 (1009)
.+.+|.+|-... ..+. +. ..-.|+++..+.|.+..||.+++..++
T Consensus 381 -k~knp~~k~~~~~~l~r~~~~~~~~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~ 439 (815)
T KOG1820|consen 381 -KGKNPQIKGECLLLLDRKLRKLGPKTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVA 439 (815)
T ss_pred -cCCChhhHHHHHHHHHHHHhhcCCcCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHH
Confidence 367777766532 1222 11 122466666666666666666666655
No 73
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.30 E-value=23 Score=44.45 Aligned_cols=219 Identities=16% Similarity=0.175 Sum_probs=130.0
Q ss_pred HHHHHHHHHHHhhCCChhhHHHHHHHhhhhhhccccCchhhHHHH-HHHHHHHhhcchHHHHHHHHHHHHHhccCCcchh
Q 001827 19 NRKLKDLRAVRSKSPSTAQFSSAFFKTLTPLFTVQRRTASAERVV-RFVSAFAATNNDEFLEDFLKFLLVAAMAANKTAR 97 (1009)
Q Consensus 19 ~k~~~~L~~l~~~~~~~~~F~~~F~~~l~~iL~~~k~~~~~dRvi-kFva~f~~~~~~~f~~~ll~~Ll~~~~akdk~VR 97 (1009)
.|....++++.....-...-...|-++++.. .-++....|++ -++..|+...- ..--..+++++...+..+.-+|
T Consensus 28 ~kr~~a~kkvIa~Mt~G~DvSslF~dvvk~~---~T~dlelKKlvyLYl~nYa~~~P-~~a~~avnt~~kD~~d~np~iR 103 (734)
T KOG1061|consen 28 EKRKDAVKKVIAYMTVGKDVSSLFPDVVKCM---QTRDLELKKLVYLYLMNYAKGKP-DLAILAVNTFLKDCEDPNPLIR 103 (734)
T ss_pred hhHHHHHHHHHhcCccCcchHhhhHHHHhhc---ccCCchHHHHHHHHHHHhhccCc-hHHHhhhhhhhccCCCCCHHHH
Confidence 3455556665544332234444555544321 22233444433 44555554321 1122245566665555555554
Q ss_pred HhHHHHHHHHHhcCCCCCcCCHHHHHHHHHHHHHHhCCCChhHHHHHHHHHhcccCCCC----ChHHHHHHHHhcCCCCC
Q 001827 98 FRACQIISEIIMRLPDDTEVSDEVWDEVIECMKVKVGDKVSVIRTFAVRSLSRFVNDSD----NSDILDLLLEVLPLEQN 173 (1009)
Q Consensus 98 ~R~cqli~~ll~~l~~~~~idedl~~~l~~~ll~Rl~DK~~~VR~qAv~aL~rlQ~~~~----d~~v~~~ll~~l~~D~s 173 (1009)
-=+.+. +..++ .+.+.+.+..-|.+-++|+.|-||.-|+.+..+|-+.+. +..++..|-+++. |++
T Consensus 104 ~lAlrt----m~~l~-----v~~i~ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~~~~~~~gl~~~L~~ll~-D~~ 173 (734)
T KOG1061|consen 104 ALALRT----MGCLR-----VDKITEYLCDPLLKCLKDDDPYVRKTAAVCVAKLFDIDPDLVEDSGLVDALKDLLS-DSN 173 (734)
T ss_pred HHHhhc----eeeEe-----ehHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhcCChhhccccchhHHHHHHhc-CCC
Confidence 433322 12222 346777888888888999999999999999999975543 3468899999996 999
Q ss_pred HHHHHHHHhhCC------C-------CcccHHHHHHhhCCCChHHHHHHHHHHhccCCCCCCCHHHHHHHHHHhhcCCCH
Q 001827 174 ADVRKTIVLSLP------P-------SNATSQAIIDCTLDVSESVRKAAYCVLANKFPLQSLSIKHRTMILKRGLADRSE 240 (1009)
Q Consensus 174 ~eVRraaL~~i~------~-------~~~tl~~il~R~rDv~~~VRr~ay~~L~~~v~~~~lsi~qR~~LL~~GL~Dr~~ 240 (1009)
|.|=-.++..+. + +...+..++++...-++=-+-.+...++.-++-.+....+....+..-|.--.+
T Consensus 174 p~VVAnAlaaL~eI~e~~~~~~~~~l~~~~~~~lL~al~ec~EW~qi~IL~~l~~y~p~d~~ea~~i~~r~~p~Lqh~n~ 253 (734)
T KOG1061|consen 174 PMVVANALAALSEIHESHPSVNLLELNPQLINKLLEALNECTEWGQIFILDCLAEYVPKDSREAEDICERLTPRLQHANS 253 (734)
T ss_pred chHHHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHHHHHhhhhhHHHHHHHHHhcCCCCchhHHHHHHHhhhhhccCCc
Confidence 999988885541 1 233455666666666666666666666655555555555555555555555555
Q ss_pred HHHHHHHHHHH
Q 001827 241 AVSKECLKLMK 251 (1009)
Q Consensus 241 ~Vr~a~~~~L~ 251 (1009)
+|.=.+.|.+.
T Consensus 254 avvlsavKv~l 264 (734)
T KOG1061|consen 254 AVVLSAVKVIL 264 (734)
T ss_pred ceEeehHHHHH
Confidence 55555555553
No 74
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=85.15 E-value=12 Score=47.86 Aligned_cols=191 Identities=18% Similarity=0.218 Sum_probs=145.2
Q ss_pred HHHHHHHHHHHHhccCCcchhHhHHHHHHHHHhcCCCCCcCCHHHHHHHHHHHHHHhCCCChhHHHHHHHHHhcccCCCC
Q 001827 77 FLEDFLKFLLVAAMAANKTARFRACQIISEIIMRLPDDTEVSDEVWDEVIECMKVKVGDKVSVIRTFAVRSLSRFVNDSD 156 (1009)
Q Consensus 77 f~~~ll~~Ll~~~~akdk~VR~R~cqli~~ll~~l~~~~~idedl~~~l~~~ll~Rl~DK~~~VR~qAv~aL~rlQ~~~~ 156 (1009)
.+..+-.++...+.+++..=|-=+.-=+..++.+-+ .++....+..+-..+..|.+|-+-+|=..|+..|.-+...-.
T Consensus 250 i~~ki~~~l~t~~~s~~WK~R~Eale~l~~~l~e~~--~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr 327 (815)
T KOG1820|consen 250 ILSKITKNLETEMLSKKWKDRKEALEELVAILEEAK--KEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLR 327 (815)
T ss_pred hhhhcChHHHHhhhccchHHHHHHHHHHHHHHhccc--cccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcc
Confidence 566777889999999999999998887777777766 357777778888889999999999999999999888863222
Q ss_pred C------hHHHHHHHHhcCCCCCHHHHHHHHhhC------CCCcccHHHHHHhhCCCChHHHHHHHHHHhc---cCC---
Q 001827 157 N------SDILDLLLEVLPLEQNADVRKTIVLSL------PPSNATSQAIIDCTLDVSESVRKAAYCVLAN---KFP--- 218 (1009)
Q Consensus 157 d------~~v~~~ll~~l~~D~s~eVRraaL~~i------~~~~~tl~~il~R~rDv~~~VRr~ay~~L~~---~v~--- 218 (1009)
. ..+...+++.+ .|.-+++|-+++..+ .......+.|++-+++.++.+|-..+.-+.. +.+
T Consensus 328 ~~~~~~~~~v~p~lld~l-kekk~~l~d~l~~~~d~~~ns~~l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~~ 406 (815)
T KOG1820|consen 328 PLFRKYAKNVFPSLLDRL-KEKKSELRDALLKALDAILNSTPLSKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGPKT 406 (815)
T ss_pred hhhHHHHHhhcchHHHHh-hhccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCcC
Confidence 1 13567788888 489999998888654 2335668999999999999999886665443 334
Q ss_pred CCCCCHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhhhcCCC-HHHHhhhcCc
Q 001827 219 LQSLSIKHRTMILKRGLADRSEAVSKECLKLMKDHWLAKHCNGN-PIELLKYLDV 272 (1009)
Q Consensus 219 ~~~lsi~qR~~LL~~GL~Dr~~~Vr~a~~~~L~~~Wl~~~~~gd-i~~LL~~LDV 272 (1009)
...-++.++...+-.+-+|+++.||+|+.+.+. .-++ ..+.+ +..+|.-++-
T Consensus 407 ~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~-~v~k-~~Ge~~~~k~L~~~~~ 459 (815)
T KOG1820|consen 407 VEKETVKTLVPHLIKHINDTDKDVRKAALEAVA-AVMK-VHGEEVFKKLLKDLDK 459 (815)
T ss_pred cchhhHHHHhHHHhhhccCCcHHHHHHHHHHHH-HHHH-HhhHHHHHHHHHhhcc
Confidence 344567788877778999999999999999884 6665 34333 4456655553
No 75
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.11 E-value=88 Score=38.33 Aligned_cols=131 Identities=15% Similarity=0.231 Sum_probs=89.7
Q ss_pred HHHHHHHHHHHHHhccCCcchhHhHHHHHHHHHhcCCC-CC-cCCHHHHHHHHHHHHHHhCCCChhHHHHHHHHHhcccC
Q 001827 76 EFLEDFLKFLLVAAMAANKTARFRACQIISEIIMRLPD-DT-EVSDEVWDEVIECMKVKVGDKVSVIRTFAVRSLSRFVN 153 (1009)
Q Consensus 76 ~f~~~ll~~Ll~~~~akdk~VR~R~cqli~~ll~~l~~-~~-~idedl~~~l~~~ll~Rl~DK~~~VR~qAv~aL~rlQ~ 153 (1009)
.|++.++.-|-+.+.-.|.+||=.+ .++..++..+.. .+ ..+ .+.++.-+.+|++++.|..|..-|.=|.-|..
T Consensus 121 ~~Fn~iFdvL~klsaDsd~~V~~~a-eLLdRLikdIVte~~~tFs---L~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds 196 (675)
T KOG0212|consen 121 VYFNEIFDVLCKLSADSDQNVRGGA-ELLDRLIKDIVTESASTFS---LPEFIPLLRERIYVINPMTRQFLVSWLYVLDS 196 (675)
T ss_pred cchHHHHHHHHHHhcCCccccccHH-HHHHHHHHHhccccccccC---HHHHHHHHHHHHhcCCchHHHHHHHHHHHHhc
Confidence 4889999999999999999999875 477777776542 22 344 35677888999999999999999999988854
Q ss_pred CCC-C-----hHHHHHHHHhcCCCCCHHHHHHH-------HhhCC---C---CcccHHHHHHhhCCCChHHHHHHHH
Q 001827 154 DSD-N-----SDILDLLLEVLPLEQNADVRKTI-------VLSLP---P---SNATSQAIIDCTLDVSESVRKAAYC 211 (1009)
Q Consensus 154 ~~~-d-----~~v~~~ll~~l~~D~s~eVRraa-------L~~i~---~---~~~tl~~il~R~rDv~~~VRr~ay~ 211 (1009)
-|+ + +++..-|+.+| .|++.|||... |..|. - .+.+++.++.++.--++-++..|..
T Consensus 197 ~P~~~m~~yl~~~ldGLf~~L-sD~s~eVr~~~~t~l~~fL~eI~s~P~s~d~~~~i~vlv~~l~ss~~~iq~~al~ 272 (675)
T KOG0212|consen 197 VPDLEMISYLPSLLDGLFNML-SDSSDEVRTLTDTLLSEFLAEIRSSPSSMDYDDMINVLVPHLQSSEPEIQLKALT 272 (675)
T ss_pred CCcHHHHhcchHHHHHHHHHh-cCCcHHHHHHHHHHHHHHHHHHhcCccccCcccchhhccccccCCcHHHHHHHHH
Confidence 333 1 34677777777 59999999432 22232 1 1344555555555555555544433
No 76
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=84.57 E-value=4.3 Score=50.08 Aligned_cols=175 Identities=17% Similarity=0.212 Sum_probs=111.7
Q ss_pred hHHHHHHHHHHHHHhccCCcchhHhHHHHHHHHHhcCCCCCcCCHHHHHHHHHHHHHHhCCCChhHHHHHHHHHhcccC-
Q 001827 75 DEFLEDFLKFLLVAAMAANKTARFRACQIISEIIMRLPDDTEVSDEVWDEVIECMKVKVGDKVSVIRTFAVRSLSRFVN- 153 (1009)
Q Consensus 75 ~~f~~~ll~~Ll~~~~akdk~VR~R~cqli~~ll~~l~~~~~idedl~~~l~~~ll~Rl~DK~~~VR~qAv~aL~rlQ~- 153 (1009)
.+|-.+++.+|++.+.+.|..||++=.|=|-..+..|.+ ..+++.+|-.+..+ ++|++|.+|.|++.++.-|..
T Consensus 325 ~eyq~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~~Lt~-~~~~d~I~phv~~G----~~DTn~~Lre~Tlksm~~La~k 399 (690)
T KOG1243|consen 325 EEYQVRIIPVLLKLFKSPDRQIRLLLLQYIEKYIDHLTK-QILNDQIFPHVALG----FLDTNATLREQTLKSMAVLAPK 399 (690)
T ss_pred cccccchhhhHHHHhcCcchHHHHHHHHhHHHHhhhcCH-HhhcchhHHHHHhh----cccCCHHHHHHHHHHHHHHHhh
Confidence 347778889999999999999999955555555555543 13455555555444 899999999999999988852
Q ss_pred --CC-CChHHHHHHHHhcCCCCCHHHHHHHHhhCCCC---------cccHHHHHHh-hCCCChHHHHHHHHHHhccCC-C
Q 001827 154 --DS-DNSDILDLLLEVLPLEQNADVRKTIVLSLPPS---------NATSQAIIDC-TLDVSESVRKAAYCVLANKFP-L 219 (1009)
Q Consensus 154 --~~-~d~~v~~~ll~~l~~D~s~eVRraaL~~i~~~---------~~tl~~il~R-~rDv~~~VRr~ay~~L~~~v~-~ 219 (1009)
.. -+.+..+. +..++.|.....|-.-..|+..= +..+..-..| ++|-=..-|++.-..+..-.. +
T Consensus 400 L~~~~Ln~Ellr~-~ar~q~d~~~~irtntticlgki~~~l~~~~R~~vL~~aftralkdpf~paR~a~v~~l~at~~~~ 478 (690)
T KOG1243|consen 400 LSKRNLNGELLRY-LARLQPDEHGGIRTNTTICLGKIAPHLAASVRKRVLASAFTRALKDPFVPARKAGVLALAATQEYF 478 (690)
T ss_pred hchhhhcHHHHHH-HHhhCccccCcccccceeeecccccccchhhhccccchhhhhhhcCCCCCchhhhhHHHhhccccc
Confidence 11 13455554 44566788888887665554321 2333333445 577777778777766652111 1
Q ss_pred CCCCHHHHH-HHHHHhhcCCCHHHHHHHHHHHHHHHHh
Q 001827 220 QSLSIKHRT-MILKRGLADRSEAVSKECLKLMKDHWLA 256 (1009)
Q Consensus 220 ~~lsi~qR~-~LL~~GL~Dr~~~Vr~a~~~~L~~~Wl~ 256 (1009)
..=+++.|+ --+--++.|.+..||..+.+.+ ...+.
T Consensus 479 ~~~~va~kIlp~l~pl~vd~e~~vr~~a~~~i-~~fl~ 515 (690)
T KOG1243|consen 479 DQSEVANKILPSLVPLTVDPEKTVRDTAEKAI-RQFLE 515 (690)
T ss_pred chhhhhhhccccccccccCcccchhhHHHHHH-HHHHh
Confidence 112233333 2233477799999999998877 35554
No 77
>COG5537 IRR1 Cohesin [Cell division and chromosome partitioning]
Probab=82.27 E-value=3.6 Score=49.86 Aligned_cols=121 Identities=17% Similarity=0.103 Sum_probs=81.8
Q ss_pred chHHHHHHHHHHHHHhccCCcchhHhHHHHHHHHHhcCCC--------------------CCc-CCHHHHHHHHHHHHHH
Q 001827 74 NDEFLEDFLKFLLVAAMAANKTARFRACQIISEIIMRLPD--------------------DTE-VSDEVWDEVIECMKVK 132 (1009)
Q Consensus 74 ~~~f~~~ll~~Ll~~~~akdk~VR~R~cqli~~ll~~l~~--------------------~~~-idedl~~~l~~~ll~R 132 (1009)
++.++..++.|++....++=.-+|+-+.-++-.++..+.. +.. |++.+-+-....+..|
T Consensus 204 nss~~ld~~~W~~sms~st~r~~RhtaT~~c~liq~~Lc~qa~~lsEKksR~ne~~l~~ln~sl~~d~i~dicdsvfvsR 283 (740)
T COG5537 204 NSSCYLDYIGWALSMSNSTVRCFRHTATSCCRLIQKKLCVQAFSLSEKKSRMNELALYDLNPSLIRDEIKDICDSVFVSR 283 (740)
T ss_pred cchHHHHHHHHHHhccCCceeeeehhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcchHHHHHHHHHHHHHHhhh
Confidence 6789999999999999988888888876666555554221 112 2333334445667889
Q ss_pred hCCCChhHHHHHHHHHhcccCC-CC---ChHHHHHHHHhcCCCCCHHHHHHHHhhCCCCcccHHHHHHhhCCCC
Q 001827 133 VGDKVSVIRTFAVRSLSRFVND-SD---NSDILDLLLEVLPLEQNADVRKTIVLSLPPSNATSQAIIDCTLDVS 202 (1009)
Q Consensus 133 l~DK~~~VR~qAv~aL~rlQ~~-~~---d~~v~~~ll~~l~~D~s~eVRraaL~~i~~~~~tl~~il~R~rDv~ 202 (1009)
.+|+.+.+|+.++.+|+-+.+. |+ .....+.+=|.| .|-+..||..+++ +++++..|---.+
T Consensus 284 y~Dv~d~IRv~c~~~L~dwi~lvP~yf~k~~~lry~GW~L-SDn~~~vRl~v~K-------il~~L~s~~p~~d 349 (740)
T COG5537 284 YIDVDDVIRVLCSMSLRDWIGLVPDYFRKILGLRYNGWSL-SDNHEGVRLLVSK-------ILLFLCSRIPHTD 349 (740)
T ss_pred ccchhHHHHHHHHHHHHHHHhcchHHHHhhhccccccccc-ccchHHHHHHHHH-------HHHHHHhcCCcch
Confidence 9999999999999999987532 11 011234444667 5999999999874 4455555554444
No 78
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=81.63 E-value=1e+02 Score=40.52 Aligned_cols=97 Identities=21% Similarity=0.302 Sum_probs=72.7
Q ss_pred ccCchh-hHHHHHHHHHHHhhcchHHHHHHHHHHHHHhccCCcchhHhHHHHHHHHHhcCCCCCcCCHHHHHHHHHHHHH
Q 001827 53 QRRTAS-AERVVRFVSAFAATNNDEFLEDFLKFLLVAAMAANKTARFRACQIISEIIMRLPDDTEVSDEVWDEVIECMKV 131 (1009)
Q Consensus 53 ~k~~~~-~dRvikFva~f~~~~~~~f~~~ll~~Ll~~~~akdk~VR~R~cqli~~ll~~l~~~~~idedl~~~l~~~ll~ 131 (1009)
++.++. ...+.+-++..+...-++=-..++.||.+...+.+...|.-+..++..+...+|. -+-..++.+...+.+
T Consensus 90 ~E~~~~vr~k~~dviAeia~~~l~e~WPell~~L~q~~~S~~~~~rE~al~il~s~~~~~~~---~~~~~~~~l~~lf~q 166 (1075)
T KOG2171|consen 90 SETEPSVRHKLADVIAEIARNDLPEKWPELLQFLFQSTKSPNPSLRESALLILSSLPETFGN---TLQPHLDDLLRLFSQ 166 (1075)
T ss_pred hccchHHHHHHHHHHHHHHHhccccchHHHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhcc---ccchhHHHHHHHHHH
Confidence 334433 3344455555554432223457889999999999999999999999999888883 333456677888888
Q ss_pred HhCCCChhHHHHHHHHHhccc
Q 001827 132 KVGDKVSVIRTFAVRSLSRFV 152 (1009)
Q Consensus 132 Rl~DK~~~VR~qAv~aL~rlQ 152 (1009)
-+.|-...||+.|++|++-|-
T Consensus 167 ~~~d~s~~vr~~a~rA~~a~~ 187 (1075)
T KOG2171|consen 167 TMTDPSSPVRVAAVRALGAFA 187 (1075)
T ss_pred hccCCcchHHHHHHHHHHHHH
Confidence 899999999999999999985
No 79
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=81.62 E-value=41 Score=47.34 Aligned_cols=198 Identities=14% Similarity=0.173 Sum_probs=127.1
Q ss_pred HHHHHHHhccCCcchhHhHHHHHHHHHhcCCCCCcCCHHHHH-HHHHHHHHHhCCCChhHHHHHHHHHhcccCCCCChHH
Q 001827 82 LKFLLVAAMAANKTARFRACQIISEIIMRLPDDTEVSDEVWD-EVIECMKVKVGDKVSVIRTFAVRSLSRFVNDSDNSDI 160 (1009)
Q Consensus 82 l~~Ll~~~~akdk~VR~R~cqli~~ll~~l~~~~~idedl~~-~l~~~ll~Rl~DK~~~VR~qAv~aL~rlQ~~~~d~~v 160 (1009)
+..|.+...+.+..+|-.++..|..+-.+- .++..-+.+ .....|++-|.+..+.++..|+.+|+.|-.. .+.+.
T Consensus 490 IP~LV~LL~s~~~~iqeeAawAL~NLa~~~---~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~-~d~~~ 565 (2102)
T PLN03200 490 IPPLVQLLETGSQKAKEDSATVLWNLCCHS---EDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRT-ADAAT 565 (2102)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhCCc---HHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhc-cchhH
Confidence 566777777889999999998888876531 122211211 3455667778888999999999999999643 34456
Q ss_pred HHHHHHhcCCCCCHHHHHHHHhhC----------------CCCcccHHHHHHhhCCCChHHHHHHHHHHhccCCCCCCCH
Q 001827 161 LDLLLEVLPLEQNADVRKTIVLSL----------------PPSNATSQAIIDCTLDVSESVRKAAYCVLANKFPLQSLSI 224 (1009)
Q Consensus 161 ~~~ll~~l~~D~s~eVRraaL~~i----------------~~~~~tl~~il~R~rDv~~~VRr~ay~~L~~~v~~~~lsi 224 (1009)
+..|+.+|..|. +.+...++.-+ ..+..-++.+++-++.-++.+++.|+..|+.-++ -+.
T Consensus 566 I~~Lv~LLlsdd-~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a---~~~ 641 (2102)
T PLN03200 566 ISQLTALLLGDL-PESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFS---SRQ 641 (2102)
T ss_pred HHHHHHHhcCCC-hhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhc---CCh
Confidence 677888886554 45555555322 1134678999999998899999999998874332 222
Q ss_pred HHHHHHHH--------HhhcCCCHHHHHHHHHHHHHHHHhh---------hcCCCHHHHhhhcCcccchHHHHHHHHH--
Q 001827 225 KHRTMILK--------RGLADRSEAVSKECLKLMKDHWLAK---------HCNGNPIELLKYLDVETYELVGESVMAA-- 285 (1009)
Q Consensus 225 ~qR~~LL~--------~GL~Dr~~~Vr~a~~~~L~~~Wl~~---------~~~gdi~~LL~~LDV~~~~~~ae~~L~~-- 285 (1009)
+++..++. .-|...+..|++.+...|. +-+.. ...|-+..|++.|...+ .++.+.++.+
T Consensus 642 d~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~-nL~~~~~~~q~~~~v~~GaV~pL~~LL~~~d-~~v~e~Al~ALa 719 (2102)
T PLN03200 642 DLCESLATDEIINPCIKLLTNNTEAVATQSARALA-ALSRSIKENRKVSYAAEDAIKPLIKLAKSSS-IEVAEQAVCALA 719 (2102)
T ss_pred HHHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHH-HHHhCCCHHHHHHHHHcCCHHHHHHHHhCCC-hHHHHHHHHHHH
Confidence 33332222 2456778888888877763 33320 11355666888887643 4555555444
Q ss_pred -HHhh
Q 001827 286 -LLKE 289 (1009)
Q Consensus 286 -lf~~ 289 (1009)
+++.
T Consensus 720 nLl~~ 724 (2102)
T PLN03200 720 NLLSD 724 (2102)
T ss_pred HHHcC
Confidence 5554
No 80
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.51 E-value=1.6e+02 Score=37.30 Aligned_cols=162 Identities=17% Similarity=0.162 Sum_probs=101.2
Q ss_pred CCCCHHHHHHHHHHHhhHHhcCCcchHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHhhCCchhhhhcccCcCCCCCCCC
Q 001827 531 KHVHLDVQRVAIRCLGLFGLLENKPSEELVKQLRLSFVKGCPTVSIMAGKALIDLGMWHGPQEVDKAMGQKDISFQPRND 610 (1009)
Q Consensus 531 ~~~~~~VR~~al~CLGL~cLldk~~a~~~~~ll~~~~~~~~~~vki~ALkaifDlll~hG~~~ld~~~~~~~~~s~~~~~ 610 (1009)
...++..=..+|||+|=|.+.-.+- ...+..|...+.-....+.-.++..+-|++-.|.-.+ +..-.. ....-+
T Consensus 360 tevD~~fvrkaIraig~~aik~e~~-~~cv~~lLell~~~~~yvvqE~~vvi~dilRkyP~~~-~~vv~~--l~~~~~-- 433 (734)
T KOG1061|consen 360 TEVDVDFVRKAVRAIGRLAIKAEQS-NDCVSILLELLETKVDYVVQEAIVVIRDILRKYPNKY-ESVVAI--LCENLD-- 433 (734)
T ss_pred hhhCHHHHHHHHHHhhhhhhhhhhh-hhhHHHHHHHHhhcccceeeehhHHHHhhhhcCCCch-hhhhhh--hccccc--
Confidence 3467888899999999999875543 3456677766665566666678899999999996432 221110 010000
Q ss_pred CCCCCCCCCCCCCc---------------cchhHHHHHHHHhhhcccCCCCCCCCchhHHHHHHHHHHHHhhcCCCCCCC
Q 001827 611 KMTSSPINLSETDG---------------DLNVELLDLLYAGIVASDRGKYSGDENESIEAVIGEGFAKVLLLSEKYPSI 675 (1009)
Q Consensus 611 ~~~~~~~~~s~~e~---------------~~~~~llklL~~~L~~~~~~~~~~~e~~evq~iaaEGlaKLLL~~~~~~~~ 675 (1009)
++.+++. +....++..|.+.+. +|..+||...--.--|+||... +
T Consensus 434 -------sl~epeak~amiWilg~y~~~i~~a~elL~~f~en~~---------dE~~~Vql~LLta~ik~Fl~~p--~-- 493 (734)
T KOG1061|consen 434 -------SLQEPEAKAALIWILGEYAERIENALELLESFLENFK---------DETAEVQLELLTAAIKLFLKKP--T-- 493 (734)
T ss_pred -------ccCChHHHHHHHHHHhhhhhccCcHHHHHHHHHhhcc---------cchHHHHHHHHHHHHHHHhcCC--c--
Confidence 0111111 124556666666654 4789999998888999998542 1
Q ss_pred CchhhHHHHHHHHHHhcCCCCcchhHHHHHHHhhhcccccCCHHHHHH
Q 001827 676 PASLHSLLLAKLINLYFSNESKDLQRLKQCLSIFFEHYASLSANHKRC 723 (1009)
Q Consensus 676 ~~~~~~~lLs~LvLlyFnP~t~~n~~LRQcLsvFFp~ya~ss~~nQ~~ 723 (1009)
...+++..+ +++-+.-.+|+.||-=--.+-+.|.......++.
T Consensus 494 ---~tq~~l~~v--L~~~~~d~~~~dlrDr~l~Y~RlLs~~~~~a~~v 536 (734)
T KOG1061|consen 494 ---ETQELLQGV--LPLATADTDNPDLRDRGLIYWRLLSEDPLIAKDV 536 (734)
T ss_pred ---cHHHHHHHH--HhhhhccccChhhhhhHHHHHHHhhcCHHHHHHH
Confidence 235677664 4667777788888876555566666444444433
No 81
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=81.43 E-value=9.9 Score=48.61 Aligned_cols=97 Identities=18% Similarity=0.208 Sum_probs=65.2
Q ss_pred HHHHHHHHHHHHhccCCcchhHhHHHHHHHHH-hcCCCCCcCCHHHHHHHHHHHHHHhC-CCChhHHHHHHHHHhcccCC
Q 001827 77 FLEDFLKFLLVAAMAANKTARFRACQIISEII-MRLPDDTEVSDEVWDEVIECMKVKVG-DKVSVIRTFAVRSLSRFVND 154 (1009)
Q Consensus 77 f~~~ll~~Ll~~~~akdk~VR~R~cqli~~ll-~~l~~~~~idedl~~~l~~~ll~Rl~-DK~~~VR~qAv~aL~rlQ~~ 154 (1009)
+=..+..|+.+.+.++--..|-|+|-+++..- ..++ |...+.++.+....=+. |++=.||++|+.||.-|-..
T Consensus 459 mE~flv~hVfP~f~s~~g~Lrarac~vl~~~~~~df~-----d~~~l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~ 533 (1010)
T KOG1991|consen 459 MEYFLVNHVFPEFQSPYGYLRARACWVLSQFSSIDFK-----DPNNLSEALELTHNCLLNDNELPVRVEAALALQSFISN 533 (1010)
T ss_pred HHHHHHHHhhHhhcCchhHHHHHHHHHHHHHHhccCC-----ChHHHHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhc
Confidence 44456788999999999999999999998865 2333 33344444444444454 99999999999999999533
Q ss_pred CCC---------hHHHHHHHHhcCCCCCHHHHHH
Q 001827 155 SDN---------SDILDLLLEVLPLEQNADVRKT 179 (1009)
Q Consensus 155 ~~d---------~~v~~~ll~~l~~D~s~eVRra 179 (1009)
.+. .++.+.|+.++ ++...|.=-.
T Consensus 534 ~~~~~e~~~~hvp~~mq~lL~L~-ne~End~Lt~ 566 (1010)
T KOG1991|consen 534 QEQADEKVSAHVPPIMQELLKLS-NEVENDDLTN 566 (1010)
T ss_pred chhhhhhHhhhhhHHHHHHHHHH-HhcchhHHHH
Confidence 321 13566777665 3444444333
No 82
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=81.26 E-value=2 Score=52.44 Aligned_cols=82 Identities=23% Similarity=0.293 Sum_probs=68.0
Q ss_pred HhCCCChhHHHHHHHHHhcccC-CCC-ChHHHHHHHHhcCCCCCHHHHHHHHhh-------CCCCcccHHHHHHhhCCCC
Q 001827 132 KVGDKVSVIRTFAVRSLSRFVN-DSD-NSDILDLLLEVLPLEQNADVRKTIVLS-------LPPSNATSQAIIDCTLDVS 202 (1009)
Q Consensus 132 Rl~DK~~~VR~qAv~aL~rlQ~-~~~-d~~v~~~ll~~l~~D~s~eVRraaL~~-------i~~~~~tl~~il~R~rDv~ 202 (1009)
=+-|-.--||..||.++++|.. .|+ ....++.|++++ ||.-.+||..++.. |.+++.-++.|++.+.|.+
T Consensus 381 GlEDEf~EVR~AAV~Sl~~La~ssP~FA~~aldfLvDMf-NDE~~~VRL~ai~aL~~Is~~l~i~eeql~~il~~L~D~s 459 (823)
T KOG2259|consen 381 GLEDEFYEVRRAAVASLCSLATSSPGFAVRALDFLVDMF-NDEIEVVRLKAIFALTMISVHLAIREEQLRQILESLEDRS 459 (823)
T ss_pred echHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHHHheecHHHHHHHHHHHHhcC
Confidence 3567778899999999999963 233 345778888888 89999999888744 5667888999999999999
Q ss_pred hHHHHHHHHHHh
Q 001827 203 ESVRKAAYCVLA 214 (1009)
Q Consensus 203 ~~VRr~ay~~L~ 214 (1009)
..||.++-.-|.
T Consensus 460 ~dvRe~l~elL~ 471 (823)
T KOG2259|consen 460 VDVREALRELLK 471 (823)
T ss_pred HHHHHHHHHHHH
Confidence 999999888776
No 83
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=80.26 E-value=4.3 Score=50.33 Aligned_cols=123 Identities=20% Similarity=0.243 Sum_probs=77.2
Q ss_pred HHHHHHHHHHHHhccCCcchhHhHHHHHHHHHhcCCCCCcCCHHHHHHHHHHHHHHhCCC---ChhHHHHHHHHHhcccC
Q 001827 77 FLEDFLKFLLVAAMAANKTARFRACQIISEIIMRLPDDTEVSDEVWDEVIECMKVKVGDK---VSVIRTFAVRSLSRFVN 153 (1009)
Q Consensus 77 f~~~ll~~Ll~~~~akdk~VR~R~cqli~~ll~~l~~~~~idedl~~~l~~~ll~Rl~DK---~~~VR~qAv~aL~rlQ~ 153 (1009)
++..+.+.|-.....+|...+.= .-.-|+++|. . .....++.-+.++ .+.||..||.||.++.
T Consensus 487 ~~~~l~~~l~~~~~~~~~~~~~~----~LkaLgN~g~----~-----~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~- 552 (618)
T PF01347_consen 487 YVPYLEQELKEAVSRGDEEEKIV----YLKALGNLGH----P-----ESIPVLLPYIEGKEEVPHFIRVAAIQALRRLA- 552 (618)
T ss_dssp GTHHHHHHHHHHHHTT-HHHHHH----HHHHHHHHT-----G-----GGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGG-
T ss_pred HHHHHHHHHHHHhhccCHHHHHH----HHHHhhccCC----c-----hhhHHHHhHhhhccccchHHHHHHHHHHHHHh-
Confidence 45555555554444444443333 3334455562 1 1244555556666 8899999999999994
Q ss_pred CCCChHHHHHHHHhcCC-CCCHHHHHHHHhhCC---CCcccHHHHHHhh-CCCChHHHHHHHHHH
Q 001827 154 DSDNSDILDLLLEVLPL-EQNADVRKTIVLSLP---PSNATSQAIIDCT-LDVSESVRKAAYCVL 213 (1009)
Q Consensus 154 ~~~d~~v~~~ll~~l~~-D~s~eVRraaL~~i~---~~~~tl~~il~R~-rDv~~~VRr~ay~~L 213 (1009)
...+..+.+.|+.+..+ ...+|||.+|+.-|. |+...+..|...+ +|-+.-|+..+|+.|
T Consensus 553 ~~~~~~v~~~l~~I~~n~~e~~EvRiaA~~~lm~~~P~~~~l~~i~~~l~~E~~~QV~sfv~S~L 617 (618)
T PF01347_consen 553 KHCPEKVREILLPIFMNTTEDPEVRIAAYLILMRCNPSPSVLQRIAQSLWNEPSNQVASFVYSHL 617 (618)
T ss_dssp GT-HHHHHHHHHHHHH-TTS-HHHHHHHHHHHHHT---HHHHHHHHHHHTT-S-HHHHHHHHHHH
T ss_pred hcCcHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCCCHHHHHHHHHHHhhCchHHHHHHHHHhc
Confidence 33334577788877754 556899999997764 5566788888888 799999999999987
No 84
>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans). DopA homologues are found in mammals. Saccharomyces cerevisiae DOP1 is essential for viability and, affects cellular morphogenesis [].
Probab=79.85 E-value=1.2e+02 Score=34.76 Aligned_cols=152 Identities=19% Similarity=0.267 Sum_probs=85.6
Q ss_pred HHHHHHHHHHHHhccCCcchhHhHHHHHHHHHhcCCCCCcCCHHHHHHHHHHHHHHhCCCChhHHHHHHHHHhcccCCCC
Q 001827 77 FLEDFLKFLLVAAMAANKTARFRACQIISEIIMRLPDDTEVSDEVWDEVIECMKVKVGDKVSVIRTFAVRSLSRFVNDSD 156 (1009)
Q Consensus 77 f~~~ll~~Ll~~~~akdk~VR~R~cqli~~ll~~l~~~~~idedl~~~l~~~ll~Rl~DK~~~VR~qAv~aL~rlQ~~~~ 156 (1009)
.+..++--|+.|.+....-+==|+..++..+-..++++ -.|..+-.+++ ..|.+|.-|..-+.+--....
T Consensus 135 ~l~~li~slLpGLede~sE~~~~~~~ll~~l~~~v~~~-----~F~~~lwl~ii-----~sp~~Rl~al~~l~~~l~~~~ 204 (307)
T PF04118_consen 135 CLKGLILSLLPGLEDEGSEFFDRTLKLLDKLKEAVGDK-----YFWQCLWLCII-----TSPSRRLGALNYLLRRLPKFQ 204 (307)
T ss_pred HHHHHHHHhccccccCCchHHHHHHHHHHHHHHhcChh-----HHHHHHHHHHh-----cCcchhHHHHHHHHHhCCccc
Confidence 44455555666666666666666666666666665531 23444433333 577888887776665521111
Q ss_pred ChHHHHHHHHhcCCCCCHHHHHHHHhhCCCCccc-HHHHHHhhCCCChHHHHHHHHHHhccCCCCC------CCHHHHHH
Q 001827 157 NSDILDLLLEVLPLEQNADVRKTIVLSLPPSNAT-SQAIIDCTLDVSESVRKAAYCVLANKFPLQS------LSIKHRTM 229 (1009)
Q Consensus 157 d~~v~~~ll~~l~~D~s~eVRraaL~~i~~~~~t-l~~il~R~rDv~~~VRr~ay~~L~~~v~~~~------lsi~qR~~ 229 (1009)
. +.....-..+...+++.+.. +.++...+-|.+..|+|.++.-|...+|+.+ ++.+.+..
T Consensus 205 ~-------------~~~~~~~~~~~~~~~~~~~Llv~al~~~L~D~~iLVqR~~LDlLl~~~PL~s~~~~~~~~~~d~~~ 271 (307)
T PF04118_consen 205 N-------------DELSLSSEEQEYCLGPDPGLLVRALCACLEDENILVQRGFLDLLLSHFPLDSPVLQSLLSPEDKEL 271 (307)
T ss_pred c-------------cccccchHHHHHhcCCCccHHHHHHHHHhCCchHHHHHHHHHHHHHhCCCCCcchhhhCCHHHHHH
Confidence 0 00000001122233433333 4667777788888999999998877777543 67788887
Q ss_pred HHHHhhc---CCCHHHHHHHHHHHHHHHHh
Q 001827 230 ILKRGLA---DRSEAVSKECLKLMKDHWLA 256 (1009)
Q Consensus 230 LL~~GL~---Dr~~~Vr~a~~~~L~~~Wl~ 256 (1009)
|+...+. -||-+.. +.| ..||-
T Consensus 272 Lv~a~l~~~lrrDmSLn----RRl-~~WLl 296 (307)
T PF04118_consen 272 LVMAALKVVLRRDMSLN----RRL-WNWLL 296 (307)
T ss_pred HHHHHHHHHhHhhhhHH----HHH-HHHHC
Confidence 7776554 3444333 445 47885
No 85
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=78.80 E-value=42 Score=41.02 Aligned_cols=188 Identities=18% Similarity=0.194 Sum_probs=115.5
Q ss_pred CCcchhHhHHHHHHHHHh-cCCCCCcCCHHHHHHHHHHHHHHhCCCChhHHHHHHHHHhcccCC--CCChHHHH----HH
Q 001827 92 ANKTARFRACQIISEIIM-RLPDDTEVSDEVWDEVIECMKVKVGDKVSVIRTFAVRSLSRFVND--SDNSDILD----LL 164 (1009)
Q Consensus 92 kdk~VR~R~cqli~~ll~-~l~~~~~idedl~~~l~~~ll~Rl~DK~~~VR~qAv~aL~rlQ~~--~~d~~v~~----~l 164 (1009)
|+..+==|+..++..+++ .++++.+ .+++-+.+...++.=+--|..+||-.....|+++-+- +.|.++.+ .|
T Consensus 59 k~~si~dRil~fl~~f~~Y~~~~dpe-g~~~V~~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl 137 (885)
T COG5218 59 KNPSIPDRILSFLKRFFEYDMPDDPE-GEELVAGTFYHLLRGTESKDKKVRKRSLQILALLSDVVREIDEVLANGLLEKL 137 (885)
T ss_pred cCCCcHHHHHHHHHHHHHhcCCCChh-hhHHHHHHHHHHHhcccCcchhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 345555666667777776 4554333 2567788888888888889999999999999998643 23444444 44
Q ss_pred HHhcCCCCCHHHHHHHHhhCCC------Cccc--HHHHHHhh-CCCChHHHHHHHHHHhccCCCCCCCHHHHHHHHHHhh
Q 001827 165 LEVLPLEQNADVRKTIVLSLPP------SNAT--SQAIIDCT-LDVSESVRKAAYCVLANKFPLQSLSIKHRTMILKRGL 235 (1009)
Q Consensus 165 l~~l~~D~s~eVRraaL~~i~~------~~~t--l~~il~R~-rDv~~~VRr~ay~~L~~~v~~~~lsi~qR~~LL~~GL 235 (1009)
...+ .|--+-||+.|+.++.. +++. ...++.-+ .|-++.|||+|...|. ++. ..+-.+|.
T Consensus 138 ~~R~-~DRE~~VR~eAv~~L~~~Qe~~~neen~~~n~l~~~vqnDPS~EVRr~allni~--vdn-----sT~p~IlE--- 206 (885)
T COG5218 138 SERL-FDREKAVRREAVKVLCYYQEMELNEENRIVNLLKDIVQNDPSDEVRRLALLNIS--VDN-----STYPCILE--- 206 (885)
T ss_pred HHHH-hcchHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHhcCcHHHHHHHHHHHee--eCC-----CcchhHHH---
Confidence 4445 69999999999987642 3221 22223333 6999999999999886 221 22344554
Q ss_pred cCCCHHHHHHHHHHHHHHHHhhhcCCCH-------HHHhhhcCcccchHHHHHHHHHHHhhhhcccc
Q 001827 236 ADRSEAVSKECLKLMKDHWLAKHCNGNP-------IELLKYLDVETYELVGESVMAALLKEEYISSA 295 (1009)
Q Consensus 236 ~Dr~~~Vr~a~~~~L~~~Wl~~~~~gdi-------~~LL~~LDV~~~~~~ae~~L~~lf~~~~~~~~ 295 (1009)
|.-.|--|-.+++....|.+ -||+ -.+|---++...+..++.++..++..+|+...
T Consensus 207 --RarDv~~anRr~vY~r~Lp~--iGd~~~lsi~kri~l~ewgl~dRe~sv~~a~~d~ia~~w~~~~ 269 (885)
T COG5218 207 --RARDVSGANRRMVYERCLPR--IGDLKSLSIDKRILLMEWGLLDREFSVKGALVDAIASAWRIPE 269 (885)
T ss_pred --HhhhhhHHHHHHHHHHHhhh--hcchhhccccceehhhhhcchhhhhhHHHHHHHHHHHHhcccc
Confidence 22223334445555555542 2332 12333345555666777777777777776544
No 86
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=77.92 E-value=7.1 Score=50.09 Aligned_cols=147 Identities=17% Similarity=0.202 Sum_probs=89.1
Q ss_pred chhHhHHHHHHHHHhcC--CCCCcCCHHHHHHHHHHHHHHhCC-CChhHHHHHHHHHhcccCC-CCC------hHHHHHH
Q 001827 95 TARFRACQIISEIIMRL--PDDTEVSDEVWDEVIECMKVKVGD-KVSVIRTFAVRSLSRFVND-SDN------SDILDLL 164 (1009)
Q Consensus 95 ~VR~R~cqli~~ll~~l--~~~~~idedl~~~l~~~ll~Rl~D-K~~~VR~qAv~aL~rlQ~~-~~d------~~v~~~l 164 (1009)
--|==+..+++.|.++. |+.+-+.- .+...-++-+.| .+|..|...+++|++|=.+ ++. ...-+.|
T Consensus 572 EqrtmaAFVLAviv~nf~lGQ~acl~~----~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL 647 (1387)
T KOG1517|consen 572 EQRTMAAFVLAVIVRNFKLGQKACLNG----NLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKL 647 (1387)
T ss_pred HHHHHHHHHHHHHHcccchhHHHhccc----cHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHHHH
Confidence 34555666777777764 33222332 334456777888 5899999999999998433 321 2356777
Q ss_pred HHhcCCCCCHHHHHHHHhhCCCCcccHHHHHHhhCCCChHHHHHHHHHHhccCCCCCCCHHHHHHHHHHhhcCCCHHHHH
Q 001827 165 LEVLPLEQNADVRKTIVLSLPPSNATSQAIIDCTLDVSESVRKAAYCVLANKFPLQSLSIKHRTMILKRGLADRSEAVSK 244 (1009)
Q Consensus 165 l~~l~~D~s~eVRraaL~~i~~~~~tl~~il~R~rDv~~~VRr~ay~~L~~~v~~~~lsi~qR~~LL~~GL~Dr~~~Vr~ 244 (1009)
+.+| .|+.+|||-||+-.+.- +-....+--|....|+..-+.-=.+++....+.+.-++.++. -++|-++-||+
T Consensus 648 ~~~L-sD~vpEVRaAAVFALgt----fl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~-~vsdgsplvr~ 721 (1387)
T KOG1517|consen 648 ILLL-SDPVPEVRAAAVFALGT----FLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMSLLA-LVSDGSPLVRT 721 (1387)
T ss_pred HHHh-cCccHHHHHHHHHHHHH----HhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHHHHH-HHhccchHHHH
Confidence 7777 59999999999976641 100000002333333322222111123344555555667776 88999999999
Q ss_pred HHHHHHH
Q 001827 245 ECLKLMK 251 (1009)
Q Consensus 245 a~~~~L~ 251 (1009)
+..-.|.
T Consensus 722 ev~v~ls 728 (1387)
T KOG1517|consen 722 EVVVALS 728 (1387)
T ss_pred HHHHHHH
Confidence 8877764
No 87
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=77.31 E-value=36 Score=43.40 Aligned_cols=147 Identities=21% Similarity=0.243 Sum_probs=98.7
Q ss_pred hhhHHHHHHHHHHHhhcc-hHHHHHHHHHHHHHhccCCcchhHhHHHHHHHHHhcCCCCCcCCHHHHHHHHHHHHHHhCC
Q 001827 57 ASAERVVRFVSAFAATNN-DEFLEDFLKFLLVAAMAANKTARFRACQIISEIIMRLPDDTEVSDEVWDEVIECMKVKVGD 135 (1009)
Q Consensus 57 ~~~dRvikFva~f~~~~~-~~f~~~ll~~Ll~~~~akdk~VR~R~cqli~~ll~~l~~~~~idedl~~~l~~~ll~Rl~D 135 (1009)
...+++.+++..++-.++ ..-...++.-++......+--+|..+..-|+.+..-+|. +|- .+.+.-.+..-..|
T Consensus 533 ~Ir~~aa~~l~~l~~~~G~~w~~~~~i~k~L~~~~q~~y~~R~t~l~si~~la~v~g~--ei~---~~~Llp~~~~l~~D 607 (759)
T KOG0211|consen 533 SIREAAARNLPALVETFGSEWARLEEIPKLLAMDLQDNYLVRMTTLFSIHELAEVLGQ--EIT---CEDLLPVFLDLVKD 607 (759)
T ss_pred HHHHHHHHHhHHHHHHhCcchhHHHhhHHHHHHhcCcccchhhHHHHHHHHHHHHhcc--HHH---HHHHhHHHHHhccC
Confidence 446666666666665432 233444555555555555788999999999988888885 332 23344445556899
Q ss_pred CChhHHHHHHHHHhcccCC---CCChHHHHHHHHhcCCCCCHHHHHHHHhhCCCCcccHHHHHHhhCCCChHHHHHHHH
Q 001827 136 KVSVIRTFAVRSLSRFVND---SDNSDILDLLLEVLPLEQNADVRKTIVLSLPPSNATSQAIIDCTLDVSESVRKAAYC 211 (1009)
Q Consensus 136 K~~~VR~qAv~aL~rlQ~~---~~d~~v~~~ll~~l~~D~s~eVRraaL~~i~~~~~tl~~il~R~rDv~~~VRr~ay~ 211 (1009)
-.|+||.-|+..|-++-.. +.....+..++..|..|++-+||-.+..+... .....+.+..|+...++-.++.
T Consensus 608 ~vanVR~nvak~L~~i~~~L~~~~~~~~v~pll~~L~~d~~~dvr~~a~~a~~~---i~l~~~~~~~d~~~~~~~~a~~ 683 (759)
T KOG0211|consen 608 PVANVRINVAKHLPKILKLLDESVRDEEVLPLLETLSSDQELDVRYRAILAFGS---IELSRLESSLDVRDKKQLIAFL 683 (759)
T ss_pred CchhhhhhHHHHHHHHHhhcchHHHHHHHHHHHHHhccCcccchhHHHHHHHHH---HHHHHHhhhHHHHHHHHHHHHH
Confidence 9999999999999998421 22334455555666679999999998876542 2344566777877777777776
No 88
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=76.59 E-value=4.1 Score=51.56 Aligned_cols=124 Identities=18% Similarity=0.212 Sum_probs=86.4
Q ss_pred HHhCCCChhHHHHHHHHHhcccCCCC--ChHHHHHHHHhcCCCCCHHHHHHHHhhCC--------CCcccHHHHHHhhCC
Q 001827 131 VKVGDKVSVIRTFAVRSLSRFVNDSD--NSDILDLLLEVLPLEQNADVRKTIVLSLP--------PSNATSQAIIDCTLD 200 (1009)
Q Consensus 131 ~Rl~DK~~~VR~qAv~aL~rlQ~~~~--d~~v~~~ll~~l~~D~s~eVRraaL~~i~--------~~~~tl~~il~R~rD 200 (1009)
.+..=+.+.||.+++.-|++++-..+ -...+-.|..-|++-..+.||..++..|. +...++|.|-.|++|
T Consensus 938 v~g~~~~~~vra~~vvTlakmcLah~~LaKr~~P~lvkeLe~~~~~aiRnNiV~am~D~C~~YTam~d~YiP~I~~~L~D 1017 (1529)
T KOG0413|consen 938 VEGAMFSDKVRAVGVVTLAKMCLAHDRLAKRLMPMLVKELEYNTAHAIRNNIVLAMGDICSSYTAMTDRYIPMIAASLCD 1017 (1529)
T ss_pred ccccccchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhHHHHhcceeeeehhhHHHHHHHHHHhhHHHHHHhcC
Confidence 34556788999999999999862211 12355677777888899999998875543 357889999999999
Q ss_pred CChHHHHHHHHHHhccC--CCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHh
Q 001827 201 VSESVRKAAYCVLANKF--PLQSLSIKHRTMILKRGLADRSEAVSKECLKLMKDHWLA 256 (1009)
Q Consensus 201 v~~~VRr~ay~~L~~~v--~~~~lsi~qR~~LL~~GL~Dr~~~Vr~a~~~~L~~~Wl~ 256 (1009)
-++.|||..+--|+.-+ ++-...-.--...+- .|-|-++.||.-+.=.+ .+-|.
T Consensus 1018 p~~iVRrqt~ilL~rLLq~~~vKw~G~Lf~Rf~l-~l~D~~edIr~~a~f~~-~~vL~ 1073 (1529)
T KOG0413|consen 1018 PSVIVRRQTIILLARLLQFGIVKWNGELFIRFML-ALLDANEDIRNDAKFYI-SEVLQ 1073 (1529)
T ss_pred chHHHHHHHHHHHHHHHhhhhhhcchhhHHHHHH-HHcccCHHHHHHHHHHH-HHHHh
Confidence 99999999999777422 111111111222332 57899999998776555 56665
No 89
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=76.31 E-value=1.7e+02 Score=34.67 Aligned_cols=156 Identities=17% Similarity=0.279 Sum_probs=94.0
Q ss_pred HHHHHHHHHHHHhccCCcchhHhHHHHHHHHHhcCCCCCcCCHHHHHHHHHHHHHHh-CCCChhHHHHHHHHHhcc----
Q 001827 77 FLEDFLKFLLVAAMAANKTARFRACQIISEIIMRLPDDTEVSDEVWDEVIECMKVKV-GDKVSVIRTFAVRSLSRF---- 151 (1009)
Q Consensus 77 f~~~ll~~Ll~~~~akdk~VR~R~cqli~~ll~~l~~~~~idedl~~~l~~~ll~Rl-~DK~~~VR~qAv~aL~rl---- 151 (1009)
++..++... ....+..+|.-++|+++.++|.++++. ..+.+.+.+...+ ....+.-|.+++..+.=+
T Consensus 190 ll~~l~~~~---~~~~~~~~~~~~~~~la~LvNK~~~~~-----~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaL 261 (415)
T PF12460_consen 190 LLQSLLNLA---LSSEDEFSRLAALQLLASLVNKWPDDD-----DLDEFLDSLLQSISSSEDSELRPQALEILIWITKAL 261 (415)
T ss_pred HHHHHHHHH---HcCCChHHHHHHHHHHHHHHcCCCChh-----hHHHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHH
Confidence 444444333 444559999999999999999987432 4455555555555 566666777766665433
Q ss_pred --cCCCCChHHHHHHHHhcCCCCCHHHHHHHHhhCCCCcccHHHHHHhhCCCChHHHHHHHHHHhccCCCCCCCHHHHHH
Q 001827 152 --VNDSDNSDILDLLLEVLPLEQNADVRKTIVLSLPPSNATSQAIIDCTLDVSESVRKAAYCVLANKFPLQSLSIKHRTM 229 (1009)
Q Consensus 152 --Q~~~~d~~v~~~ll~~l~~D~s~eVRraaL~~i~~~~~tl~~il~R~rDv~~~VRr~ay~~L~~~v~~~~lsi~qR~~ 229 (1009)
.+++....+++.|+.++.+ +++...+-..+.+--...+.++.+ .-...||-.-=+++- .+-.-
T Consensus 262 v~R~~~~~~~~~~~L~~lL~~---~~~g~~aA~~f~il~~d~~~~l~~--~~~a~vklLykQR~F----------~~~~p 326 (415)
T PF12460_consen 262 VMRGHPLATELLDKLLELLSS---PELGQQAAKAFGILLSDSDDVLNK--ENHANVKLLYKQRFF----------TQVLP 326 (415)
T ss_pred HHcCCchHHHHHHHHHHHhCC---hhhHHHHHHHHhhHhcCcHHhcCc--cccchhhhHHhHHHH----------HHHHH
Confidence 2445555788999999954 888888887776544444555544 222333333222332 11122
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHHHHh
Q 001827 230 ILKRGLADRSEAVSKECLKLMKDHWLA 256 (1009)
Q Consensus 230 LL~~GL~Dr~~~Vr~a~~~~L~~~Wl~ 256 (1009)
.|-.|..+.+..+|..+...|. .-++
T Consensus 327 ~L~~~~~~~~~~~k~~yL~ALs-~ll~ 352 (415)
T PF12460_consen 327 KLLEGFKEADDEIKSNYLTALS-HLLK 352 (415)
T ss_pred HHHHHHhhcChhhHHHHHHHHH-HHHh
Confidence 3345888888777777666653 4443
No 90
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=75.83 E-value=37 Score=39.31 Aligned_cols=97 Identities=15% Similarity=0.227 Sum_probs=68.7
Q ss_pred HHHHHHHhccCCcchhHhHHHHHHHHHhcCCCCCcCCHHHH-------HHHHHHHHHHhCCCChhHHHHHHHHHhcccCC
Q 001827 82 LKFLLVAAMAANKTARFRACQIISEIIMRLPDDTEVSDEVW-------DEVIECMKVKVGDKVSVIRTFAVRSLSRFVND 154 (1009)
Q Consensus 82 l~~Ll~~~~akdk~VR~R~cqli~~ll~~l~~~~~idedl~-------~~l~~~ll~Rl~DK~~~VR~qAv~aL~rlQ~~ 154 (1009)
+.+|.....+.|-.||||||.-|+.|--. .--. -++..+|..-+.|-.+.|.+||..||..+..+
T Consensus 210 lpvLVsll~s~d~dvqyycttaisnIaVd--------~~~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasd 281 (550)
T KOG4224|consen 210 LPVLVSLLKSGDLDVQYYCTTAISNIAVD--------RRARKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASD 281 (550)
T ss_pred chhhhhhhccCChhHHHHHHHHhhhhhhh--------HHHHHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhccc
Confidence 67889999999999999999998875432 2111 13566777788999999999999999999755
Q ss_pred CCC-hHH-----HHHHHHhcCCCCCHHHHHH--HHhhCCC
Q 001827 155 SDN-SDI-----LDLLLEVLPLEQNADVRKT--IVLSLPP 186 (1009)
Q Consensus 155 ~~d-~~v-----~~~ll~~l~~D~s~eVRra--aL~~i~~ 186 (1009)
..= -+| +..|+.+|+.+.-|.|=-. .+.||.+
T Consensus 282 t~Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisi 321 (550)
T KOG4224|consen 282 TEYQREIVEAGSLPLLVELLQSPMGPLILASVACIRNISI 321 (550)
T ss_pred chhhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhccc
Confidence 432 133 4578888876666655433 2344544
No 91
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=75.78 E-value=1.4e+02 Score=40.70 Aligned_cols=241 Identities=13% Similarity=0.178 Sum_probs=139.7
Q ss_pred HHHHHHhhhhhhhH-HHH--HHHHHHHhhCCChhhHHHHHHHhhhhh--hccccCchhhHHHHHHHHHHHhhcchHHHHH
Q 001827 6 KILDESRTSYATHN-RKL--KDLRAVRSKSPSTAQFSSAFFKTLTPL--FTVQRRTASAERVVRFVSAFAATNNDEFLED 80 (1009)
Q Consensus 6 ~iF~~aQ~s~~~H~-k~~--~~L~~l~~~~~~~~~F~~~F~~~l~~i--L~~~k~~~~~dRvikFva~f~~~~~~~f~~~ 80 (1009)
++|++-+-+-++.- |.- +.|..+.+..++ ......|.+.-++- +.-++|-..+ +.=+++=+...-..++..
T Consensus 923 elFq~G~Lg~Tp~Gg~isTYKELc~LASdl~q-PdLVYKFM~LAnh~A~wnSk~GaAfG---f~~i~~~a~~kl~p~l~k 998 (1702)
T KOG0915|consen 923 ELFQEGTLGKTPDGGKISTYKELCNLASDLGQ-PDLVYKFMQLANHNATWNSKKGAAFG---FGAIAKQAGEKLEPYLKK 998 (1702)
T ss_pred hcccCCcCCCCCCCCcchHHHHHHHHHhhcCC-hHHHHHHHHHhhhhchhhcccchhhc---hHHHHHHHHHhhhhHHHH
Confidence 35555555432222 221 456666665554 57777787777642 2455554221 111222222224568999
Q ss_pred HHHHHHHHhccCCcchhHhHHHHHHHHHhcCCCCCcCCHHHHHHHHHHHHHHhCCCChhHHHHHHHHHhcccCCCCChHH
Q 001827 81 FLKFLLVAAMAANKTARFRACQIISEIIMRLPDDTEVSDEVWDEVIECMKVKVGDKVSVIRTFAVRSLSRFVNDSDNSDI 160 (1009)
Q Consensus 81 ll~~Ll~~~~akdk~VR~R~cqli~~ll~~l~~~~~idedl~~~l~~~ll~Rl~DK~~~VR~qAv~aL~rlQ~~~~d~~v 160 (1009)
|+-.|.++-...|+.|+=--..|=+.++.. .-.+=++-|..|.+-|+.-+-+|+--||..+-.||.-|-++.+.+++
T Consensus 999 LIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D---~k~~vd~y~neIl~eLL~~lt~kewRVReasclAL~dLl~g~~~~~~ 1075 (1702)
T KOG0915|consen 999 LIPRLYRYQYDPDKKVQDAMTSIWNALITD---SKKVVDEYLNEILDELLVNLTSKEWRVREASCLALADLLQGRPFDQV 1075 (1702)
T ss_pred hhHHHhhhccCCcHHHHHHHHHHHHHhccC---hHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHcCCChHHH
Confidence 999999999999999985433333333222 12344566778888889999999999999999999998666554443
Q ss_pred H-------HHHHHhcCCCCCHHHHHHHHhhCCCCcccHHHHHHhhCCCChHHHHH-HHHHHhccCCCCCCCHHHHHHHHH
Q 001827 161 L-------DLLLEVLPLEQNADVRKTIVLSLPPSNATSQAIIDCTLDVSESVRKA-AYCVLANKFPLQSLSIKHRTMILK 232 (1009)
Q Consensus 161 ~-------~~ll~~l~~D~s~eVRraaL~~i~~~~~tl~~il~R~rDv~~~VRr~-ay~~L~~~v~~~~lsi~qR~~LL~ 232 (1009)
. .++...|. |-...||.|+=. ...++..++-|..|+...+--. +...+. -.|+.
T Consensus 1076 ~e~lpelw~~~fRvmD-DIKEsVR~aa~~----~~~~lsKl~vr~~d~~~~~~~~~~l~~iL-------------PfLl~ 1137 (1702)
T KOG0915|consen 1076 KEKLPELWEAAFRVMD-DIKESVREAADK----AARALSKLCVRICDVTNGAKGKEALDIIL-------------PFLLD 1137 (1702)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHH----HHHHHHHHHhhhcccCCcccHHHHHHHHH-------------HHHhc
Confidence 3 33333442 444445554422 1233444444554442222111 111111 35778
Q ss_pred HhhcCCCHHHHHHHHHHHHHHHHhhhcCCCH--------HHHhhhcCcc
Q 001827 233 RGLADRSEAVSKECLKLMKDHWLAKHCNGNP--------IELLKYLDVE 273 (1009)
Q Consensus 233 ~GL~Dr~~~Vr~a~~~~L~~~Wl~~~~~gdi--------~~LL~~LDV~ 273 (1009)
.|....-+.||+.|.+.+. .-.+ ..++-+ ..|++.+++-
T Consensus 1138 ~gims~v~evr~~si~tl~-dl~K-ssg~~lkP~~~~LIp~ll~~~s~l 1184 (1702)
T KOG0915|consen 1138 EGIMSKVNEVRRFSIGTLM-DLAK-SSGKELKPHFPKLIPLLLNAYSEL 1184 (1702)
T ss_pred cCcccchHHHHHHHHHHHH-HHHH-hchhhhcchhhHHHHHHHHHcccc
Confidence 8888778999999999986 5554 455432 4455555543
No 92
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=73.77 E-value=20 Score=45.03 Aligned_cols=194 Identities=18% Similarity=0.261 Sum_probs=125.7
Q ss_pred chhhHHHHHHHHHHHhhc------------------chHHHHHHHHHHHHHhccCCcchhHhHHHHHHHHHhcCCC----
Q 001827 56 TASAERVVRFVSAFAATN------------------NDEFLEDFLKFLLVAAMAANKTARFRACQIISEIIMRLPD---- 113 (1009)
Q Consensus 56 ~~~~dRvikFva~f~~~~------------------~~~f~~~ll~~Ll~~~~akdk~VR~R~cqli~~ll~~l~~---- 113 (1009)
.....-+++|+-.++..+ ..+-+..-+.+|-.+..+.....||-+.+.|+++-...|+
T Consensus 240 ~~~~s~~~~fl~s~l~~K~emV~~EaArai~~l~~~~~r~l~pavs~Lq~flssp~~~lRfaAvRtLnkvAm~~P~~v~~ 319 (865)
T KOG1078|consen 240 QQADSPLFPFLESCLRHKSEMVIYEAARAIVSLPNTNSRELAPAVSVLQLFLSSPKVALRFAAVRTLNKVAMKHPQAVTV 319 (865)
T ss_pred ccchhhHHHHHHHHHhchhHHHHHHHHHHHhhccccCHhhcchHHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCccccc
Confidence 334556667777666532 2344445677777888888999999999999999887553
Q ss_pred -CC----cCCHH-----------HHHHH-----------HHHHHHHhCCCChhHHHHHHHHHhcccCCC-----------
Q 001827 114 -DT----EVSDE-----------VWDEV-----------IECMKVKVGDKVSVIRTFAVRSLSRFVNDS----------- 155 (1009)
Q Consensus 114 -~~----~ided-----------l~~~l-----------~~~ll~Rl~DK~~~VR~qAv~aL~rlQ~~~----------- 155 (1009)
|. -|.+. |++.- +..+..-+-|-+--|=++|+.+|+-.---.
T Consensus 320 cN~elE~lItd~NrsIat~AITtLLKTG~e~sv~rLm~qI~~fv~disDeFKivvvdai~sLc~~fp~k~~~~m~FL~~~ 399 (865)
T KOG1078|consen 320 CNLDLESLITDSNRSIATLAITTLLKTGTESSVDRLMKQISSFVSDISDEFKIVVVDAIRSLCLKFPRKHTVMMNFLSNM 399 (865)
T ss_pred cchhHHhhhcccccchhHHHHHHHHHhcchhHHHHHHHHHHHHHHhccccceEEeHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 10 11110 22211 233444467888888999999998763100
Q ss_pred --CC------hHHHHHHHHhcC-CCCCHHHHHHHHhh---------------------CCCC---cccHHHHHHhhCCCC
Q 001827 156 --DN------SDILDLLLEVLP-LEQNADVRKTIVLS---------------------LPPS---NATSQAIIDCTLDVS 202 (1009)
Q Consensus 156 --~d------~~v~~~ll~~l~-~D~s~eVRraaL~~---------------------i~~~---~~tl~~il~R~rDv~ 202 (1009)
.+ ..+++.++.++. ++.+.|-+.+-|.- .|.+ .+.+.+|..|.-=-+
T Consensus 400 Lr~eGg~e~K~aivd~Ii~iie~~pdsKe~~L~~LCefIEDce~~~i~~rILhlLG~EgP~a~~Pskyir~iyNRviLEn 479 (865)
T KOG1078|consen 400 LREEGGFEFKRAIVDAIIDIIEENPDSKERGLEHLCEFIEDCEFTQIAVRILHLLGKEGPKAPNPSKYIRFIYNRVILEN 479 (865)
T ss_pred HHhccCchHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHhccchHHHHHHHHHHhccCCCCCCcchhhHHHhhhhhhhh
Confidence 01 136777777776 44444444443311 1221 357889999998889
Q ss_pred hHHHHHHHHHHhccCCCCCCCH-HHHHHHHHHhhcCCCHHHHHHHHHHH
Q 001827 203 ESVRKAAYCVLANKFPLQSLSI-KHRTMILKRGLADRSEAVSKECLKLM 250 (1009)
Q Consensus 203 ~~VRr~ay~~L~~~v~~~~lsi-~qR~~LL~~GL~Dr~~~Vr~a~~~~L 250 (1009)
..||.+|-..|+ |+....-.. .-..-+|++.+.|++..||+.+.-.|
T Consensus 480 ~ivRaaAv~ala-Kfg~~~~~l~~sI~vllkRc~~D~DdevRdrAtf~l 527 (865)
T KOG1078|consen 480 AIVRAAAVSALA-KFGAQDVVLLPSILVLLKRCLNDSDDEVRDRATFYL 527 (865)
T ss_pred hhhHHHHHHHHH-HHhcCCCCccccHHHHHHHHhcCchHHHHHHHHHHH
Confidence 999999999888 554322221 22367889999999999999998766
No 93
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=71.24 E-value=6.3 Score=38.91 Aligned_cols=36 Identities=8% Similarity=0.175 Sum_probs=32.1
Q ss_pred CHHHHHHHHHHHHHHhCCCChhHHHHHHHHHhcccC
Q 001827 118 SDEVWDEVIECMKVKVGDKVSVIRTFAVRSLSRFVN 153 (1009)
Q Consensus 118 dedl~~~l~~~ll~Rl~DK~~~VR~qAv~aL~rlQ~ 153 (1009)
+..-+..+.+.|++||+||.|.|...|...|-.+..
T Consensus 32 s~~~~~ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~ 67 (122)
T cd03572 32 SVGSCQELLEYLLKRLKRSSPHVKLKVLKIIKHLCE 67 (122)
T ss_pred CHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHh
Confidence 446688999999999999999999999999999863
No 94
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=70.85 E-value=8.2 Score=47.53 Aligned_cols=159 Identities=16% Similarity=0.147 Sum_probs=115.2
Q ss_pred HHHHHhhhhcccCC----CCHHHHHHHHHHHhhHHhcCCcchHHHHHHHHHHHhh-CChhHHHHHHHHHHHHHHhhCCch
Q 001827 519 AELLHSLLLPGAKH----VHLDVQRVAIRCLGLFGLLENKPSEELVKQLRLSFVK-GCPTVSIMAGKALIDLGMWHGPQE 593 (1009)
Q Consensus 519 ~~ll~sLIlPaV~~----~~~~VR~~al~CLGL~cLldk~~a~~~~~ll~~~~~~-~~~~vki~ALkaifDlll~hG~~~ 593 (1009)
.+-+.-+|..++.| .++.++..|-.||.-+..+..+.+.+.+++|.....+ ..+.||.-|+-++.|+++.|...
T Consensus 890 Ls~F~pvVeE~csn~~~~sd~~lq~aA~l~L~klMClS~~fc~ehlpllIt~mek~p~P~IR~NaVvglgD~~vcfN~~- 968 (1128)
T COG5098 890 LSNFKPVVEEGCSNSSRFSDEELQVAAYLSLYKLMCLSFEFCSEHLPLLITSMEKHPIPRIRANAVVGLGDFLVCFNTT- 968 (1128)
T ss_pred HhhhhHHHHHHhccccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhCCCcceeccceeeccccceehhhh-
Confidence 33444555556655 8999999999999999888888999999999999986 56899999999999999998541
Q ss_pred hhhhcccCcCCCCCCCCCCCCCCCCCCCCCccchhHHHHHHHHhhhcccCCCCCCCCchhHHHHHHHHHHHHhhcCCCCC
Q 001827 594 VDKAMGQKDISFQPRNDKMTSSPINLSETDGDLNVELLDLLYAGIVASDRGKYSGDENESIEAVIGEGFAKVLLLSEKYP 673 (1009)
Q Consensus 594 ld~~~~~~~~~s~~~~~~~~~~~~~~s~~e~~~~~~llklL~~~L~~~~~~~~~~~e~~evq~iaaEGlaKLLL~~~~~~ 673 (1009)
.....++||..|. +++..||-.+---++=|+|.|.+--
T Consensus 969 ---------------------------------~de~t~yLyrrL~---------De~~~V~rtclmti~fLilagq~KV 1006 (1128)
T COG5098 969 ---------------------------------ADEHTHYLYRRLG---------DEDADVRRTCLMTIHFLILAGQLKV 1006 (1128)
T ss_pred ---------------------------------hHHHHHHHHHHhc---------chhhHHHHHHHHHHHHHHHccceee
Confidence 2234578888875 5889999999999999999996542
Q ss_pred CCCchhhHHHHHHHHHHhcCCCCcchhHHHHHHHhhhcccccCCHHHHHHHHHHhHHHHHhh
Q 001827 674 SIPASLHSLLLAKLINLYFSNESKDLQRLKQCLSIFFEHYASLSANHKRCLSKAFVPALRSM 735 (1009)
Q Consensus 674 ~~~~~~~~~lLs~LvLlyFnP~t~~n~~LRQcLsvFFp~ya~ss~~nQ~~l~~aFlptL~~l 735 (1009)
..=+-.+.++. +.+|++..----.||--+|. ++| -|-.-|+..+.++
T Consensus 1007 -------KGqlg~ma~~L----~deda~Isdmar~fft~~a~--KdN--t~yn~fidifs~l 1053 (1128)
T COG5098 1007 -------KGQLGKMALLL----TDEDAEISDMARHFFTQIAK--KDN--TMYNGFIDIFSTL 1053 (1128)
T ss_pred -------ccchhhhHhhc----cCCcchHHHHHHHHHHHHHh--ccc--chhhhhHHHHHHc
Confidence 12233344443 34455555544556666653 222 4666788888877
No 95
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=70.26 E-value=96 Score=38.02 Aligned_cols=196 Identities=17% Similarity=0.189 Sum_probs=121.3
Q ss_pred cCchhhHHHHHHHHHHHhhcchHHHHHHHHHHH-HHhccCCcchhHhHHHHHHHHHhcCCCCCcCCHHHH-HHHHHHHHH
Q 001827 54 RRTASAERVVRFVSAFAATNNDEFLEDFLKFLL-VAAMAANKTARFRACQIISEIIMRLPDDTEVSDEVW-DEVIECMKV 131 (1009)
Q Consensus 54 k~~~~~dRvikFva~f~~~~~~~f~~~ll~~Ll-~~~~akdk~VR~R~cqli~~ll~~l~~~~~idedl~-~~l~~~ll~ 131 (1009)
||..++--+-|.|..|+...+.+-+..+|.-|. ....+.+.+-|-...-=++.+.-++| .++..| .++..-.+-
T Consensus 16 kRKaaalelEk~Vk~l~~~~~~~~i~k~I~~L~~d~a~s~~~n~rkGgLiGlAA~~iaLg----~~~~~Y~~~iv~Pv~~ 91 (675)
T KOG0212|consen 16 KRKAAALELEKLVKDLVNNNDYDQIRKVISELAGDYAYSPHANMRKGGLIGLAAVAIALG----IKDAGYLEKIVPPVLN 91 (675)
T ss_pred HHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHhccCcccccccchHHHHHHHHHHhc----cccHHHHHHhhHHHHH
Confidence 344444444455557766666666777777444 35666666666644333333444465 333323 555566666
Q ss_pred HhCCCChhHHHHHHHHHhcccCCCC------ChHHHHHHHHhcCCCCCHHHHHHH------HhhCCCC-------cccHH
Q 001827 132 KVGDKVSVIRTFAVRSLSRFVNDSD------NSDILDLLLEVLPLEQNADVRKTI------VLSLPPS-------NATSQ 192 (1009)
Q Consensus 132 Rl~DK~~~VR~qAv~aL~rlQ~~~~------d~~v~~~ll~~l~~D~s~eVRraa------L~~i~~~-------~~tl~ 192 (1009)
=..|....||-.|..+|-.+..--+ -+++.+.+-. +..|+...||-.+ ++-|+.. ++-+|
T Consensus 92 cf~D~d~~vRyyACEsLYNiaKv~k~~v~~~Fn~iFdvL~k-lsaDsd~~V~~~aeLLdRLikdIVte~~~tFsL~~~ip 170 (675)
T KOG0212|consen 92 CFSDQDSQVRYYACESLYNIAKVAKGEVLVYFNEIFDVLCK-LSADSDQNVRGGAELLDRLIKDIVTESASTFSLPEFIP 170 (675)
T ss_pred hccCccceeeeHhHHHHHHHHHHhccCcccchHHHHHHHHH-HhcCCccccccHHHHHHHHHHHhccccccccCHHHHHH
Confidence 6899999999999988877642221 1345555444 4468888888765 3444432 24568
Q ss_pred HHHHhhCCCChHHHHHHHHHHh--ccCCCCC---CCHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHh
Q 001827 193 AIIDCTLDVSESVRKAAYCVLA--NKFPLQS---LSIKHRTMILKRGLADRSEAVSKECLKLMKDHWLA 256 (1009)
Q Consensus 193 ~il~R~rDv~~~VRr~ay~~L~--~~v~~~~---lsi~qR~~LL~~GL~Dr~~~Vr~a~~~~L~~~Wl~ 256 (1009)
.+-+|+.++++.+|+.+..-|. ..+|... ....- ..-|=+=|.|..+.||..|...| ...|.
T Consensus 171 LL~eriy~~n~~tR~flv~Wl~~Lds~P~~~m~~yl~~~-ldGLf~~LsD~s~eVr~~~~t~l-~~fL~ 237 (675)
T KOG0212|consen 171 LLRERIYVINPMTRQFLVSWLYVLDSVPDLEMISYLPSL-LDGLFNMLSDSSDEVRTLTDTLL-SEFLA 237 (675)
T ss_pred HHHHHHhcCCchHHHHHHHHHHHHhcCCcHHHHhcchHH-HHHHHHHhcCCcHHHHHHHHHHH-HHHHH
Confidence 8889999999999999988443 2333211 11222 23333478999999999998877 46775
No 96
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=70.03 E-value=24 Score=42.31 Aligned_cols=169 Identities=18% Similarity=0.226 Sum_probs=117.4
Q ss_pred HHHHHHHHHHHhccCCcchhHhHHHHHHHHHhcCCCCCcC-CHHHHHHHHHHHHHHhCCCChhHHHHHHHHHhcccCC-C
Q 001827 78 LEDFLKFLLVAAMAANKTARFRACQIISEIIMRLPDDTEV-SDEVWDEVIECMKVKVGDKVSVIRTFAVRSLSRFVND-S 155 (1009)
Q Consensus 78 ~~~ll~~Ll~~~~akdk~VR~R~cqli~~ll~~l~~~~~i-dedl~~~l~~~ll~Rl~DK~~~VR~qAv~aL~rlQ~~-~ 155 (1009)
+-.++..++..+.+.-.+-|.--.-+++++++..- + +-.+...+...|..|..|-...+|.-|+.+|++.... |
T Consensus 215 ~~~il~q~~ss~ts~~~~~ritd~Af~ael~~~~~----l~~~~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P 290 (533)
T KOG2032|consen 215 MGKILAQLLSSITSEKENGRITDIAFFAELKRPKE----LDKTGLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAP 290 (533)
T ss_pred HHHHHhhcccccchhcccchHHHHHHHHHHhCccc----ccccccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCc
Confidence 33455566666777777778777777777766542 3 3467788899999999999999999999999999755 2
Q ss_pred CC-----hHHHHHHHHhcCCCCCHHHHHHHHhhCCCC---------cccHHHHHHhh----CCCChHHHHHHHHHHhc--
Q 001827 156 DN-----SDILDLLLEVLPLEQNADVRKTIVLSLPPS---------NATSQAIIDCT----LDVSESVRKAAYCVLAN-- 215 (1009)
Q Consensus 156 ~d-----~~v~~~ll~~l~~D~s~eVRraaL~~i~~~---------~~tl~~il~R~----rDv~~~VRr~ay~~L~~-- 215 (1009)
+. .-++..++.-|..|-+.+|--.+++++... ...+-.|--|+ .|-++.+|-++|.-++-
T Consensus 291 ~kv~th~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~~l~~~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~ 370 (533)
T KOG2032|consen 291 DKVRTHKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASNDDLESYLLNIALRLRTLFDSEDDKMRAAAFVLFGALA 370 (533)
T ss_pred HHHHHhHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhcchhhhchhHHHHHHHHHHhcChhhhhhHHHHHHHHH
Confidence 21 136677888888888899999999887532 12233344455 38999999999984431
Q ss_pred cC---CCCCCCHHH---HH-HHHHHhhcCCCHHHHHHHHHHHH
Q 001827 216 KF---PLQSLSIKH---RT-MILKRGLADRSEAVSKECLKLMK 251 (1009)
Q Consensus 216 ~v---~~~~lsi~q---R~-~LL~~GL~Dr~~~Vr~a~~~~L~ 251 (1009)
++ +++..-.+| |. .++ --|+|+.+.|-.||+..+.
T Consensus 371 ~l~g~~~e~~Fte~v~k~~~~ll-lhl~d~~p~va~ACr~~~~ 412 (533)
T KOG2032|consen 371 KLAGGGWEEFFTEQVKKRLAPLL-LHLQDPNPYVARACRSELR 412 (533)
T ss_pred HHcCCCchhhhHHHHHhccccce-eeeCCCChHHHHHHHHHHH
Confidence 22 444433322 11 222 2588999999999998874
No 97
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=69.70 E-value=51 Score=36.64 Aligned_cols=97 Identities=13% Similarity=0.202 Sum_probs=57.0
Q ss_pred HHHHHHhc-cCCcchhHhHHHHHHHHHhcCCCCCcCCHHHHHH--HHHHHHHHhCCCChhHHHHHHHHHhcccCCCCChH
Q 001827 83 KFLLVAAM-AANKTARFRACQIISEIIMRLPDDTEVSDEVWDE--VIECMKVKVGDKVSVIRTFAVRSLSRFVNDSDNSD 159 (1009)
Q Consensus 83 ~~Ll~~~~-akdk~VR~R~cqli~~ll~~l~~~~~idedl~~~--l~~~ll~Rl~DK~~~VR~qAv~aL~rlQ~~~~d~~ 159 (1009)
+.|+..++ ++|..++-+++-.+... ...+ ...++.-. ....+...+.++.|.||.+|+.||..+-.+.++..
T Consensus 15 ~~Ll~lL~~t~dp~i~e~al~al~n~-aaf~----~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~~ 89 (254)
T PF04826_consen 15 QKLLCLLESTEDPFIQEKALIALGNS-AAFP----FNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQE 89 (254)
T ss_pred HHHHHHHhcCCChHHHHHHHHHHHhh-ccCh----hHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhHH
Confidence 34444444 45667777766555442 1121 22222222 25566777999999999999999999965555554
Q ss_pred HHHHHHH-----hcCCCCCHHHHHHHHhhC
Q 001827 160 ILDLLLE-----VLPLEQNADVRKTIVLSL 184 (1009)
Q Consensus 160 v~~~ll~-----~l~~D~s~eVRraaL~~i 184 (1009)
.++.++. ++....+.+|..+.|..|
T Consensus 90 ~Ik~~i~~Vc~~~~s~~lns~~Q~agLrlL 119 (254)
T PF04826_consen 90 QIKMYIPQVCEETVSSPLNSEVQLAGLRLL 119 (254)
T ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Confidence 4443333 233345677877766443
No 98
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=69.52 E-value=14 Score=38.96 Aligned_cols=113 Identities=19% Similarity=0.226 Sum_probs=75.7
Q ss_pred chhHhHHHHHHHHHhc-------------CCCCCc----CCHHHHHHHHHHHHHHhCCCChhHHHHHHHHHhcccCCCC-
Q 001827 95 TARFRACQIISEIIMR-------------LPDDTE----VSDEVWDEVIECMKVKVGDKVSVIRTFAVRSLSRFVNDSD- 156 (1009)
Q Consensus 95 ~VR~R~cqli~~ll~~-------------l~~~~~----idedl~~~l~~~ll~Rl~DK~~~VR~qAv~aL~rlQ~~~~- 156 (1009)
.||..+.+++..+... +|+... -...|+.-+ ++|-++.||.-|+.+|+-+=++.+
T Consensus 1 kvR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~i-------l~Dp~~kvR~aA~~~l~~lL~gsk~ 73 (182)
T PF13251_consen 1 KVRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCI-------LKDPSPKVRAAAASALAALLEGSKP 73 (182)
T ss_pred ChhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHH-------HcCCchhHHHHHHHHHHHHHHccHH
Confidence 3788999999888887 344311 112233333 789999999999999998843321
Q ss_pred -----------C----------h----HHHHHHHHhcCCCCCHHHHHHHHhhCCCC--------------cccHHHHHHh
Q 001827 157 -----------N----------S----DILDLLLEVLPLEQNADVRKTIVLSLPPS--------------NATSQAIIDC 197 (1009)
Q Consensus 157 -----------d----------~----~v~~~ll~~l~~D~s~eVRraaL~~i~~~--------------~~tl~~il~R 197 (1009)
. + ++-..|+..|+.+.++.+=..+++++..- ++.+..+..+
T Consensus 74 ~L~~Ae~~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~ 153 (182)
T PF13251_consen 74 FLAQAEESKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPL 153 (182)
T ss_pred HHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHH
Confidence 0 0 12367889999999999888888886421 2445555556
Q ss_pred hCCCChHHHHHHHHHHh
Q 001827 198 TLDVSESVRKAAYCVLA 214 (1009)
Q Consensus 198 ~rDv~~~VRr~ay~~L~ 214 (1009)
++..|..||-+++..++
T Consensus 154 l~~~d~~v~v~~l~~~~ 170 (182)
T PF13251_consen 154 LRHRDPNVRVAALSCLG 170 (182)
T ss_pred HhcCCCcHHHHHHHHHH
Confidence 66666777777666554
No 99
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=68.75 E-value=1.7e+02 Score=37.10 Aligned_cols=189 Identities=19% Similarity=0.199 Sum_probs=127.7
Q ss_pred HHHHHHHHHHHHhccCCcchhHhHHHHHHHHHhcCCCCCcCCHHHHHHHHHHHHHHhCCCChhHHHHHHHHHhcccCCCC
Q 001827 77 FLEDFLKFLLVAAMAANKTARFRACQIISEIIMRLPDDTEVSDEVWDEVIECMKVKVGDKVSVIRTFAVRSLSRFVNDSD 156 (1009)
Q Consensus 77 f~~~ll~~Ll~~~~akdk~VR~R~cqli~~ll~~l~~~~~idedl~~~l~~~ll~Rl~DK~~~VR~qAv~aL~rlQ~~~~ 156 (1009)
=+..+|-.|..-+..+...|--.++.|+..|-..-++ .+...=|..|-=.|++-|+--...+|..|+..++.+...-.
T Consensus 880 Pi~dllPrltPILknrheKVqen~IdLvg~IadrgpE--~v~aREWMRIcfeLlelLkahkK~iRRaa~nTfG~IakaIG 957 (1172)
T KOG0213|consen 880 PIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPE--YVSAREWMRICFELLELLKAHKKEIRRAAVNTFGYIAKAIG 957 (1172)
T ss_pred ChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcc--cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhcC
Confidence 3677888888888899999999999999998888775 67887788888888888888889999999999999965555
Q ss_pred ChHHHHHHHHhcCCCCCHHHHHHHHhhCCC------CcccHHHHHHhhCCCChHHHHHHHHHHhc---cCCCCCCC---H
Q 001827 157 NSDILDLLLEVLPLEQNADVRKTIVLSLPP------SNATSQAIIDCTLDVSESVRKAAYCVLAN---KFPLQSLS---I 224 (1009)
Q Consensus 157 d~~v~~~ll~~l~~D~s~eVRraaL~~i~~------~~~tl~~il~R~rDv~~~VRr~ay~~L~~---~v~~~~ls---i 224 (1009)
..+|+..|++-|.. ....-|-.--..|++ --..||.++.--|=-+..|-.-+...|+- -++ .++ +
T Consensus 958 PqdVLatLlnnLkv-qeRq~RvcTtvaIaIVaE~c~pFtVLPalmneYrtPe~nVQnGVLkalsf~Feyig--emskdYi 1034 (1172)
T KOG0213|consen 958 PQDVLATLLNNLKV-QERQNRVCTTVAIAIVAETCGPFTVLPALMNEYRTPEANVQNGVLKALSFMFEYIG--EMSKDYI 1034 (1172)
T ss_pred HHHHHHHHHhcchH-HHHHhchhhhhhhhhhhhhcCchhhhHHHHhhccCchhHHHHhHHHHHHHHHHHHH--HHhhhHH
Confidence 67888888877742 111122211112222 12457888876665556666555554431 111 011 2
Q ss_pred HHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhhhc-CCCHHHHhhhcC
Q 001827 225 KHRTMILKRGLADRSEAVSKECLKLMKDHWLAKHC-NGNPIELLKYLD 271 (1009)
Q Consensus 225 ~qR~~LL~~GL~Dr~~~Vr~a~~~~L~~~Wl~~~~-~gdi~~LL~~LD 271 (1009)
..-.-||...|.||+..-|.-+.+.+. +---+.. -|+.-.++|.|+
T Consensus 1035 yav~PlleDAlmDrD~vhRqta~~~I~-Hl~Lg~~g~g~eda~iHLLN 1081 (1172)
T KOG0213|consen 1035 YAVTPLLEDALMDRDLVHRQTAMNVIK-HLALGVPGTGCEDALIHLLN 1081 (1172)
T ss_pred HHhhHHHHHhhccccHHHHHHHHHHHH-HHhcCCCCcCcHHHHHHHHH
Confidence 233568899999999999999888884 3332222 245555555554
No 100
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=68.57 E-value=3e+02 Score=34.10 Aligned_cols=58 Identities=19% Similarity=0.160 Sum_probs=42.1
Q ss_pred cHHHHHHhhhhcccCCCCHHHHHHHHHHHhhHHhcCCc-chHH-HHHHHHHHHhhCChhHHHHHH
Q 001827 517 ESAELLHSLLLPGAKHVHLDVQRVAIRCLGLFGLLENK-PSEE-LVKQLRLSFVKGCPTVSIMAG 579 (1009)
Q Consensus 517 ~l~~ll~sLIlPaV~~~~~~VR~~al~CLGL~cLldk~-~a~~-~~~ll~~~~~~~~~~vki~AL 579 (1009)
...-+++.+|+ .+.-||-.|+.||.-|+|--.. ...+ ....+-.|+.+.+++||-.|-
T Consensus 488 yvrhIyNR~iL-----EN~ivRsaAv~aLskf~ln~~d~~~~~sv~~~lkRclnD~DdeVRdrAs 547 (898)
T COG5240 488 YVRHIYNRLIL-----ENNIVRSAAVQALSKFALNISDVVSPQSVENALKRCLNDQDDEVRDRAS 547 (898)
T ss_pred HHHHHHHHHHH-----hhhHHHHHHHHHHHHhccCccccccHHHHHHHHHHHhhcccHHHHHHHH
Confidence 45677777777 5788999999999999885432 2233 345577788877888887764
No 101
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=68.40 E-value=21 Score=46.16 Aligned_cols=122 Identities=16% Similarity=0.180 Sum_probs=78.1
Q ss_pred HHHHHHHHHHhccC-CcchhHhHHHHHHHHHhcCCCCCcCCHHHHHHHHHHHHHHhCCCChhHHHHHHHHHhcccCCCCC
Q 001827 79 EDFLKFLLVAAMAA-NKTARFRACQIISEIIMRLPDDTEVSDEVWDEVIECMKVKVGDKVSVIRTFAVRSLSRFVNDSDN 157 (1009)
Q Consensus 79 ~~ll~~Ll~~~~ak-dk~VR~R~cqli~~ll~~l~~~~~idedl~~~l~~~ll~Rl~DK~~~VR~qAv~aL~rlQ~~~~d 157 (1009)
-.++..++...++. .+-.|..+|-.|+.|-.+..+ +... ..-+...+.|..-|.|-.|.||+.||.||+-|-+...|
T Consensus 598 ~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~-Arw~-G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~~~d 675 (1387)
T KOG1517|consen 598 GNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDE-ARWS-GRRDNAHEKLILLLSDPVPEVRAAAVFALGTFLSNGSD 675 (1387)
T ss_pred ccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcch-hhhc-cccccHHHHHHHHhcCccHHHHHHHHHHHHHHhccccc
Confidence 35666777777874 788999999999999887542 1110 11223456667778999999999999999999643222
Q ss_pred hHHHHHHHHhcCCCCCHHHHHHHHhhCCCC--------cccHHHHHHhhCCCChHHHHHHHHHHh
Q 001827 158 SDILDLLLEVLPLEQNADVRKTIVLSLPPS--------NATSQAIIDCTLDVSESVRKAAYCVLA 214 (1009)
Q Consensus 158 ~~v~~~ll~~l~~D~s~eVRraaL~~i~~~--------~~tl~~il~R~rDv~~~VRr~ay~~L~ 214 (1009)
. .|++..|+-..+. |+.- ...+-.++.+..|-.+-||+.+-..|+
T Consensus 676 ~-----------fde~~~~~~~~~~-l~~~~~~~E~~i~~~~~~ll~~vsdgsplvr~ev~v~ls 728 (1387)
T KOG1517|consen 676 N-----------FDEQTLVVEEEID-LDDERTSIEDLIIKGLMSLLALVSDGSPLVRTEVVVALS 728 (1387)
T ss_pred c-----------cchhhhhhhhhhc-chhhhhhHHHHHHhhHHHHHHHHhccchHHHHHHHHHHH
Confidence 1 2222222211111 1100 111135678889999999999777776
No 102
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=67.46 E-value=7.1 Score=31.13 Aligned_cols=26 Identities=23% Similarity=0.318 Sum_probs=22.4
Q ss_pred HHHHHHHHHHhCCCChhHHHHHHHHH
Q 001827 123 DEVIECMKVKVGDKVSVIRTFAVRSL 148 (1009)
Q Consensus 123 ~~l~~~ll~Rl~DK~~~VR~qAv~aL 148 (1009)
..+...+..|+.|..|+||..|+..|
T Consensus 17 ~~v~~~i~~rl~D~s~~VR~aav~ll 42 (42)
T PF12765_consen 17 SDVQSAIIRRLSDSSPSVREAAVDLL 42 (42)
T ss_pred HHHHHHHHHHhcCCChHHHHHHHHHC
Confidence 37889999999999999999998653
No 103
>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]
Probab=66.74 E-value=14 Score=47.93 Aligned_cols=122 Identities=19% Similarity=0.178 Sum_probs=90.1
Q ss_pred cCCcchhHhHHHHHHHHHhcCCCCCcCCHHHHHHHHHHHHHHhCCCChhHHHHHHHHHhcccCCCCChH--------HHH
Q 001827 91 AANKTARFRACQIISEIIMRLPDDTEVSDEVWDEVIECMKVKVGDKVSVIRTFAVRSLSRFVNDSDNSD--------ILD 162 (1009)
Q Consensus 91 akdk~VR~R~cqli~~ll~~l~~~~~idedl~~~l~~~ll~Rl~DK~~~VR~qAv~aL~rlQ~~~~d~~--------v~~ 162 (1009)
--+..+|.=|+|-|+.-+...|+ ..+++....=+=|. |.||+..||.+.+.||-+|-..+++.+ .-.
T Consensus 298 DV~~~IRaiCiqeLgiWi~~yP~-~Fl~dsYLKYiGWt----LsDk~~~VRl~~lkaL~~L~e~~~~~~~L~lFtsRFK~ 372 (1048)
T KOG2011|consen 298 DVDPDIRAICIQELGIWIKSYPE-IFLSDSYLKYIGWT----LSDKNGTVRLRCLKALIKLYEKDEDKDKLELFTSRFKD 372 (1048)
T ss_pred cCchHHHHHHHHHHHHHHHhccH-HHhcchHHHHhcce----eecCccHHHHHHHHHHHHHHhccccchHHHHHHHHHHH
Confidence 34556777788888888888884 34554443444444 799999999999999999965444432 224
Q ss_pred HHHHhcCCCCCHHHHHHHHhh-------CCCCcccHHHHHHhhCCCChHHHHHHHHHHhccC
Q 001827 163 LLLEVLPLEQNADVRKTIVLS-------LPPSNATSQAIIDCTLDVSESVRKAAYCVLANKF 217 (1009)
Q Consensus 163 ~ll~~l~~D~s~eVRraaL~~-------i~~~~~tl~~il~R~rDv~~~VRr~ay~~L~~~v 217 (1009)
.++.+...|-+..||-..|.- ..++...+..|..-.-|.+..||+++=..+-.++
T Consensus 373 RIVeMadrd~~~~Vrav~L~~~~~~~~~g~L~d~di~~Vy~Li~d~~r~~~~aa~~fl~~k~ 434 (1048)
T KOG2011|consen 373 RIVEMADRDRNVSVRAVGLVLCLLLSSSGLLSDKDILIVYSLIYDSNRRVAVAAGEFLYKKL 434 (1048)
T ss_pred HHHHHHhhhcchhHHHHHHHHHHHHhcccccChhHHHHHHHHHhccCcchHHHHHHHHHHHh
Confidence 566667789999999887732 2356778888999999999999999988776544
No 104
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=66.74 E-value=66 Score=36.78 Aligned_cols=98 Identities=20% Similarity=0.210 Sum_probs=57.8
Q ss_pred CCCHHHHHHHHHHHhhHHhcCCcch---HHHHHHHH----HHHhh--C---------ChhHHHHHHHHHHHHHHhhCCch
Q 001827 532 HVHLDVQRVAIRCLGLFGLLENKPS---EELVKQLR----LSFVK--G---------CPTVSIMAGKALIDLGMWHGPQE 593 (1009)
Q Consensus 532 ~~~~~VR~~al~CLGL~cLldk~~a---~~~~~ll~----~~~~~--~---------~~~vki~ALkaifDlll~hG~~~ 593 (1009)
+..+.+|..++.|||+||.+...-- .+.+..+. ..+.+ + ++.+...||++-.=|+..-+...
T Consensus 142 s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~~aAL~aW~lLlt~~~~~~ 221 (309)
T PF05004_consen 142 SASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAAEDDAALVAAALSAWALLLTTLPDSK 221 (309)
T ss_pred ccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHHHHHHHHHHHHHHhcCCHHH
Confidence 4568899999999999999854311 21223332 22222 1 14578888887754443332111
Q ss_pred hhhhcccCcCCCCCCCCCCCCCCCCCCCCCccchhHHHHHHHHhhhcccCCCCCCCCchhHHHHHHHHHHHHhh
Q 001827 594 VDKAMGQKDISFQPRNDKMTSSPINLSETDGDLNVELLDLLYAGIVASDRGKYSGDENESIEAVIGEGFAKVLL 667 (1009)
Q Consensus 594 ld~~~~~~~~~s~~~~~~~~~~~~~~s~~e~~~~~~llklL~~~L~~~~~~~~~~~e~~evq~iaaEGlaKLLL 667 (1009)
+. ......+..|...|. +.+.+||.+|+|.+|=|+=
T Consensus 222 ~~-----------------------------~~~~~~~~~l~~lL~---------s~d~~VRiAAGEaiAll~E 257 (309)
T PF05004_consen 222 LE-----------------------------DLLEEALPALSELLD---------SDDVDVRIAAGEAIALLYE 257 (309)
T ss_pred HH-----------------------------HHHHHHHHHHHHHhc---------CCCHHHHHHHHHHHHHHHH
Confidence 10 012333455555554 4688999999999998754
No 105
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=66.58 E-value=38 Score=37.76 Aligned_cols=159 Identities=18% Similarity=0.186 Sum_probs=105.2
Q ss_pred HHHHHHHHHHHHhccCCcchhHhHHHHHHHHHhcCC---CC------CcCCH------HHHHHHHHHHHHHhCCCChhHH
Q 001827 77 FLEDFLKFLLVAAMAANKTARFRACQIISEIIMRLP---DD------TEVSD------EVWDEVIECMKVKVGDKVSVIR 141 (1009)
Q Consensus 77 f~~~ll~~Ll~~~~akdk~VR~R~cqli~~ll~~l~---~~------~~ide------dl~~~l~~~ll~Rl~DK~~~VR 141 (1009)
+....+.+|-+..+..-+.||=- |++=-.=+...+ .+ ..+|. .-...++..+++ -..|..+
T Consensus 97 ~~~~~~~~l~k~~~dp~~~v~ET-c~lAi~rle~~~~~~~~~~~~p~~SvdPa~p~~~ssv~~lr~~lld---~t~~l~~ 172 (289)
T KOG0567|consen 97 GDPESLEILTKYIKDPCKEVRET-CELAIKRLEWKDIIDKIANSSPYISVDPAPPANLSSVHELRAELLD---ETKPLFE 172 (289)
T ss_pred cchhhHHHHHHHhcCCccccchH-HHHHHHHHHHhhccccccccCccccCCCCCccccccHHHHHHHHHh---cchhHHH
Confidence 34455666666665555666654 544322222211 00 01221 123444444433 3455554
Q ss_pred H-HHHHHHhcccCCCCChHHHHHHHHhcCCCCCHHHHHHHHhhCC--CCcccHHHHHHhhCCCC--hHHHHHHHHHHhcc
Q 001827 142 T-FAVRSLSRFVNDSDNSDILDLLLEVLPLEQNADVRKTIVLSLP--PSNATSQAIIDCTLDVS--ESVRKAAYCVLANK 216 (1009)
Q Consensus 142 ~-qAv~aL~rlQ~~~~d~~v~~~ll~~l~~D~s~eVRraaL~~i~--~~~~tl~~il~R~rDv~--~~VRr~ay~~L~~~ 216 (1009)
. +|..+|-+. ...+.+..|.+-|. |+|+-.|-.|--.+. .++..+|.+.+.++|+. +-||-.+-..|+
T Consensus 173 Ry~amF~LRn~----g~EeaI~al~~~l~-~~SalfrhEvAfVfGQl~s~~ai~~L~k~L~d~~E~pMVRhEaAeALG-- 245 (289)
T KOG0567|consen 173 RYRAMFYLRNI----GTEEAINALIDGLA-DDSALFRHEVAFVFGQLQSPAAIPSLIKVLLDETEHPMVRHEAAEALG-- 245 (289)
T ss_pred HHhhhhHhhcc----CcHHHHHHHHHhcc-cchHHHHHHHHHHHhhccchhhhHHHHHHHHhhhcchHHHHHHHHHHH--
Confidence 4 455555554 23467899999996 669999999988885 46788999999999976 569999999998
Q ss_pred CCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHHH
Q 001827 217 FPLQSLSIKHRTMILKRGLADRSEAVSKECLKLM 250 (1009)
Q Consensus 217 v~~~~lsi~qR~~LL~~GL~Dr~~~Vr~a~~~~L 250 (1009)
.+--++-..+|+.-++|-++-||+.|.-.|
T Consensus 246 ----aIa~e~~~~vL~e~~~D~~~vv~esc~val 275 (289)
T KOG0567|consen 246 ----AIADEDCVEVLKEYLGDEERVVRESCEVAL 275 (289)
T ss_pred ----hhcCHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 244477788999999999999999999777
No 106
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []. ; PDB: 4A0C_A 1U6G_C.
Probab=66.04 E-value=17 Score=37.97 Aligned_cols=67 Identities=27% Similarity=0.312 Sum_probs=47.7
Q ss_pred CCChHHHHHHHHHHhcc--CCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhhhcCCCHHHHhhhcCc
Q 001827 200 DVSESVRKAAYCVLANK--FPLQSLSIKHRTMILKRGLADRSEAVSKECLKLMKDHWLAKHCNGNPIELLKYLDV 272 (1009)
Q Consensus 200 Dv~~~VRr~ay~~L~~~--v~~~~lsi~qR~~LL~~GL~Dr~~~Vr~a~~~~L~~~Wl~~~~~gdi~~LL~~LDV 272 (1009)
|---.+||+||.-+..- .-...+.+..-...+-.||.| +..||--|.-+|. + .+..++..++.+||-
T Consensus 38 DDGLelRK~ayE~lytlLd~~~~~~~~~~~~~~v~~GL~D-~~DIk~L~~~~l~-k----l~~~~p~~v~~~Ld~ 106 (169)
T PF08623_consen 38 DDGLELRKAAYECLYTLLDTCLSRIDISEFLDRVEAGLKD-EHDIKMLCHLMLS-K----LAQLAPEEVLQRLDS 106 (169)
T ss_dssp EGGGHHHHHHHHHHHHHHHSTCSSS-HHHHHHHHHHTTSS--HHHHHHHHHHHH-H----HHHS-HHHHHHCCTT
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHhhcCC-cHHHHHHHHHHHH-H----HHHhCHHHHHHHHHH
Confidence 34467999999966532 234556777778888899999 9999988888875 3 344568888888874
No 107
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=65.66 E-value=1.2e+02 Score=38.26 Aligned_cols=191 Identities=15% Similarity=0.221 Sum_probs=116.6
Q ss_pred HHHHHHHHHHHhccCCcchhHhHHHHHHHHHhcCCCCCcCCHHHHHHHHHHHHHHhCCCChhHHHHHHHHHhcccCCCCC
Q 001827 78 LEDFLKFLLVAAMAANKTARFRACQIISEIIMRLPDDTEVSDEVWDEVIECMKVKVGDKVSVIRTFAVRSLSRFVNDSDN 157 (1009)
Q Consensus 78 ~~~ll~~Ll~~~~akdk~VR~R~cqli~~ll~~l~~~~~idedl~~~l~~~ll~Rl~DK~~~VR~qAv~aL~rlQ~~~~d 157 (1009)
+..-+.-|-.+++..|.+.+|=.|-.++.|++..+. .-....+.++.=|-||.++||..|+.-|--.- ..+|
T Consensus 297 iqLCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~-------~Vqa~kdlIlrcL~DkD~SIRlrALdLl~gmV-skkN 368 (877)
T KOG1059|consen 297 IQLCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPK-------AVQAHKDLILRCLDDKDESIRLRALDLLYGMV-SKKN 368 (877)
T ss_pred HHHHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHH-------HHHHhHHHHHHHhccCCchhHHHHHHHHHHHh-hhhh
Confidence 334455566678999999999999999999988773 33444566666789999999999999888774 3344
Q ss_pred -hHHHHHHHHhcCCCCCHHHHHHHHhhCC-C-Cc----------ccHHHHHHhhCC-CChHHHHHHHHH--HhccC-CCC
Q 001827 158 -SDILDLLLEVLPLEQNADVRKTIVLSLP-P-SN----------ATSQAIIDCTLD-VSESVRKAAYCV--LANKF-PLQ 220 (1009)
Q Consensus 158 -~~v~~~ll~~l~~D~s~eVRraaL~~i~-~-~~----------~tl~~il~R~rD-v~~~VRr~ay~~--L~~~v-~~~ 220 (1009)
-+|++.||.++..-.-..-|-..+..|- + +. =.+..+++-+|= -...=+..+=+. ++-+| .+|
T Consensus 369 l~eIVk~LM~~~~~ae~t~yrdell~~II~iCS~snY~~ItdFEWYlsVlveLa~l~~~~~G~~I~eQi~Dv~iRV~~iR 448 (877)
T KOG1059|consen 369 LMEIVKTLMKHVEKAEGTNYRDELLTRIISICSQSNYQYITDFEWYLSVLVELARLEGTRHGSLIAEQIIDVAIRVPSIR 448 (877)
T ss_pred HHHHHHHHHHHHHhccchhHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHhccccchhhHHHHHHHHHheechhhh
Confidence 3688988888753333467777765541 1 11 123333333321 011112222221 11133 356
Q ss_pred CCCHHHHHHHHHHhhcCCCHHHHH-HHHHHHHHHHHhhhcCCCHHHHhhhcCcccchHHHHHHHHHHHhh
Q 001827 221 SLSIKHRTMILKRGLADRSEAVSK-ECLKLMKDHWLAKHCNGNPIELLKYLDVETYELVGESVMAALLKE 289 (1009)
Q Consensus 221 ~lsi~qR~~LL~~GL~Dr~~~Vr~-a~~~~L~~~Wl~~~~~gdi~~LL~~LDV~~~~~~ae~~L~~lf~~ 289 (1009)
.+++.|-..||...|.-.+..++. -|.-+..-.|.- |.+.+|++ + ...+++++.+.
T Consensus 449 ~fsV~~m~~Ll~~~~~~~s~q~n~~l~eVL~AaaWi~----GEyse~ve-----n----~~~~leamlrp 505 (877)
T KOG1059|consen 449 PFSVSQMSALLDDPLLAGSAQINSQLCEVLYAAAWIL----GEYSEFVE-----N----PNDTLEAMLRP 505 (877)
T ss_pred HhHHHHHHHHHhchhhccchhhccchhHHHHHHHHHH----HHHHHHhh-----C----HHHHHHHHhcC
Confidence 777888877777665555666665 566566667873 45666652 2 33445555554
No 108
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=65.43 E-value=2.3e+02 Score=31.58 Aligned_cols=130 Identities=17% Similarity=0.168 Sum_probs=82.8
Q ss_pred CCHHHHHHHHHHHHHHhCCCChhHHHHHHHHHhcccCCCCChH------HHHHHHHhcCCCCCHHHHHHHHhhC---CCC
Q 001827 117 VSDEVWDEVIECMKVKVGDKVSVIRTFAVRSLSRFVNDSDNSD------ILDLLLEVLPLEQNADVRKTIVLSL---PPS 187 (1009)
Q Consensus 117 idedl~~~l~~~ll~Rl~DK~~~VR~qAv~aL~rlQ~~~~d~~------v~~~ll~~l~~D~s~eVRraaL~~i---~~~ 187 (1009)
++.+-++++...|- .-+.|.++.+|..+|+.....+.+.+ .+..+..+| .+|++.||..++..+ +.+
T Consensus 9 l~~~~l~~Ll~lL~---~t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL-~~p~~~vr~~AL~aL~Nls~~ 84 (254)
T PF04826_consen 9 LEAQELQKLLCLLE---STEDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLL-NDPNPSVREKALNALNNLSVN 84 (254)
T ss_pred cCHHHHHHHHHHHh---cCCChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHc-CCCChHHHHHHHHHHHhcCCC
Confidence 55555555544421 24679999999999999876655443 355666677 589999999887654 444
Q ss_pred -------cccHHHHHHhh--CCCChHHHHHHHHHHhcc-C--CCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHHHH
Q 001827 188 -------NATSQAIIDCT--LDVSESVRKAAYCVLANK-F--PLQSLSIKHRTMILKRGLADRSEAVSKECLKLMK 251 (1009)
Q Consensus 188 -------~~tl~~il~R~--rDv~~~VRr~ay~~L~~~-v--~~~~lsi~qR~~LL~~GL~Dr~~~Vr~a~~~~L~ 251 (1009)
+..++.+++.+ ...+..+-.+....|..- + +...+-...-..++. -|...+..+|.-+.++|.
T Consensus 85 ~en~~~Ik~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~~~i~~ll~-LL~~G~~~~k~~vLk~L~ 159 (254)
T PF04826_consen 85 DENQEQIKMYIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLANYIPDLLS-LLSSGSEKTKVQVLKVLV 159 (254)
T ss_pred hhhHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHHhhHHHHHH-HHHcCChHHHHHHHHHHH
Confidence 35678888866 456888888888877731 1 112221222223333 344457777777777764
No 109
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=64.94 E-value=12 Score=29.84 Aligned_cols=30 Identities=23% Similarity=0.278 Sum_probs=20.6
Q ss_pred CCCCHHHHHHHHHHhhcCCCHHHHHHHHHH
Q 001827 220 QSLSIKHRTMILKRGLADRSEAVSKECLKL 249 (1009)
Q Consensus 220 ~~lsi~qR~~LL~~GL~Dr~~~Vr~a~~~~ 249 (1009)
.-|+...-...+..+|.|.+++||+|+..+
T Consensus 12 ~ll~~~~v~~~i~~rl~D~s~~VR~aav~l 41 (42)
T PF12765_consen 12 TLLDSSDVQSAIIRRLSDSSPSVREAAVDL 41 (42)
T ss_pred cccchHHHHHHHHHHhcCCChHHHHHHHHH
Confidence 345555666677777888888888777654
No 110
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=63.13 E-value=55 Score=41.16 Aligned_cols=71 Identities=18% Similarity=0.240 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHHhccCCcchhHhHHHHHHHHHhcCCCCCcCCHHHHHHHHHHHHHHhCCCChhHHHHHHHHHhccc
Q 001827 77 FLEDFLKFLLVAAMAANKTARFRACQIISEIIMRLPDDTEVSDEVWDEVIECMKVKVGDKVSVIRTFAVRSLSRFV 152 (1009)
Q Consensus 77 f~~~ll~~Ll~~~~akdk~VR~R~cqli~~ll~~l~~~~~idedl~~~l~~~ll~Rl~DK~~~VR~qAv~aL~rlQ 152 (1009)
+=..++.|+++.+.++---.|-|+|.+|+.+-..++++ .|--++|+....+ +++..-.||++|+.||.-|-
T Consensus 457 me~fiv~hv~P~f~s~ygfL~Srace~is~~eeDfkd~-~ill~aye~t~nc----l~nn~lpv~ieAalAlq~fi 527 (970)
T COG5656 457 MEYFIVNHVIPAFRSNYGFLKSRACEFISTIEEDFKDN-GILLEAYENTHNC----LKNNHLPVMIEAALALQFFI 527 (970)
T ss_pred HHHHHHHHhhHhhcCcccchHHHHHHHHHHHHHhcccc-hHHHHHHHHHHHH----HhcCCcchhhhHHHHHHHHH
Confidence 44456789999999999999999999999996666643 2333566666666 55577899999999999884
No 111
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=62.89 E-value=32 Score=48.32 Aligned_cols=132 Identities=15% Similarity=0.191 Sum_probs=98.5
Q ss_pred HHHHHHHHHhccCCcchhHhHHHHHHHHHhcCCCCCcCCHHHHHHHHHHHHHHhCCCChhHHHHHHHHHhcccCCCCC--
Q 001827 80 DFLKFLLVAAMAANKTARFRACQIISEIIMRLPDDTEVSDEVWDEVIECMKVKVGDKVSVIRTFAVRSLSRFVNDSDN-- 157 (1009)
Q Consensus 80 ~ll~~Ll~~~~akdk~VR~R~cqli~~ll~~l~~~~~idedl~~~l~~~ll~Rl~DK~~~VR~qAv~aL~rlQ~~~~d-- 157 (1009)
.-+..|.....+.++.++-.+|-+|..+..+-.+ .++.=+......-++.-++.....||.+|+.||+.+-.....
T Consensus 609 ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d--~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~~~q 686 (2102)
T PLN03200 609 DALRTLIQLLSSSKEETQEKAASVLADIFSSRQD--LCESLATDEIINPCIKLLTNNTEAVATQSARALAALSRSIKENR 686 (2102)
T ss_pred ccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChH--HHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCCHHH
Confidence 3567788888888999999999999999886553 122222234466667778899999999999999998643321
Q ss_pred ------hHHHHHHHHhcCCCCCHHHHHHHHhh---CCC---------CcccHHHHHHhhCCCChHHHHHHHHHHh
Q 001827 158 ------SDILDLLLEVLPLEQNADVRKTIVLS---LPP---------SNATSQAIIDCTLDVSESVRKAAYCVLA 214 (1009)
Q Consensus 158 ------~~v~~~ll~~l~~D~s~eVRraaL~~---i~~---------~~~tl~~il~R~rDv~~~VRr~ay~~L~ 214 (1009)
..++..|+.+|. +++.+|+..++.- |.. ....++.+++-+|.-++.+|+.|-..|.
T Consensus 687 ~~~~v~~GaV~pL~~LL~-~~d~~v~e~Al~ALanLl~~~e~~~ei~~~~~I~~Lv~lLr~G~~~~k~~Aa~AL~ 760 (2102)
T PLN03200 687 KVSYAAEDAIKPLIKLAK-SSSIEVAEQAVCALANLLSDPEVAAEALAEDIILPLTRVLREGTLEGKRNAARALA 760 (2102)
T ss_pred HHHHHHcCCHHHHHHHHh-CCChHHHHHHHHHHHHHHcCchHHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHH
Confidence 135778999994 7888888887744 332 2466899999999999999999888664
No 112
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=62.57 E-value=64 Score=40.40 Aligned_cols=106 Identities=20% Similarity=0.198 Sum_probs=77.3
Q ss_pred chHHHHHHHHHHHHHhccCCcchhHhHHHHHHHHHhcCCCCCcCCHHHHHHHHHHHHHHhC-CCChhHHHHHHHHHhccc
Q 001827 74 NDEFLEDFLKFLLVAAMAANKTARFRACQIISEIIMRLPDDTEVSDEVWDEVIECMKVKVG-DKVSVIRTFAVRSLSRFV 152 (1009)
Q Consensus 74 ~~~f~~~ll~~Ll~~~~akdk~VR~R~cqli~~ll~~l~~~~~idedl~~~l~~~ll~Rl~-DK~~~VR~qAv~aL~rlQ 152 (1009)
.++++..-...|-.++.+++.++||=+.--...+..+- -..|......+.+..-|+ +|..+||..||--|--++
T Consensus 323 e~~ll~~~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss~-----~s~davK~h~d~Ii~sLkterDvSirrravDLLY~mc 397 (938)
T KOG1077|consen 323 EPELLSRAVNQLGQFLSHRETNIRYLALESMCKLASSE-----FSIDAVKKHQDTIINSLKTERDVSIRRRAVDLLYAMC 397 (938)
T ss_pred cHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHhcc-----chHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHh
Confidence 46688888888888999999999998887777777662 233444555666777787 999999999999999997
Q ss_pred CCCCC-hHHHHHHHHhcCCCCCHHHHHHHHhhCCC
Q 001827 153 NDSDN-SDILDLLLEVLPLEQNADVRKTIVLSLPP 186 (1009)
Q Consensus 153 ~~~~d-~~v~~~ll~~l~~D~s~eVRraaL~~i~~ 186 (1009)
|.+| ..|+..|+.-|.+ -....|-.++..+++
T Consensus 398 -D~~Nak~IV~elLqYL~t-Ad~sireeivlKvAI 430 (938)
T KOG1077|consen 398 -DVSNAKQIVAELLQYLET-ADYSIREEIVLKVAI 430 (938)
T ss_pred -chhhHHHHHHHHHHHHhh-cchHHHHHHHHHHHH
Confidence 4444 4688887777754 444566666555543
No 113
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=62.01 E-value=4.9e+02 Score=34.29 Aligned_cols=62 Identities=15% Similarity=0.068 Sum_probs=53.4
Q ss_pred CHHHHHHHHHHHhhHHhcCCcchHHHHHHHHHHHhh-CChhHHHHHHHHHHHHHHhhCCchhhh
Q 001827 534 HLDVQRVAIRCLGLFGLLENKPSEELVKQLRLSFVK-GCPTVSIMAGKALIDLGMWHGPQEVDK 596 (1009)
Q Consensus 534 ~~~VR~~al~CLGL~cLldk~~a~~~~~ll~~~~~~-~~~~vki~ALkaifDlll~hG~~~ld~ 596 (1009)
.+.||..|+..||-.||-+.++|+.+++.|-.-++. +...|+.-.+-+++|+...|.. .+|.
T Consensus 944 ~~~vra~~vvTlakmcLah~~LaKr~~P~lvkeLe~~~~~aiRnNiV~am~D~C~~YTa-m~d~ 1006 (1529)
T KOG0413|consen 944 SDKVRAVGVVTLAKMCLAHDRLAKRLMPMLVKELEYNTAHAIRNNIVLAMGDICSSYTA-MTDR 1006 (1529)
T ss_pred chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhHHHHhcceeeeehhhHHHHHH-HHHH
Confidence 478999999999999999999999999998887775 5688888888999999999954 3444
No 114
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=61.18 E-value=43 Score=41.81 Aligned_cols=145 Identities=15% Similarity=0.222 Sum_probs=103.6
Q ss_pred HHHHHHHhhcch-HHHHHHHHHHHHHhccCCcchhHhHHHHHHHHHhcCCCCCcCCHHHHHHHHHHHHHHhCCCChhHHH
Q 001827 64 RFVSAFAATNND-EFLEDFLKFLLVAAMAANKTARFRACQIISEIIMRLPDDTEVSDEVWDEVIECMKVKVGDKVSVIRT 142 (1009)
Q Consensus 64 kFva~f~~~~~~-~f~~~ll~~Ll~~~~akdk~VR~R~cqli~~ll~~l~~~~~idedl~~~l~~~ll~Rl~DK~~~VR~ 142 (1009)
.-+-+|+...+. ..-+.++.|+..|+..+|..+|--++..+..+...++.+ .+.-|+ .+.|..---|-.+.+|.
T Consensus 352 ~~i~~~i~~Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~~-~Ln~El----lr~~ar~q~d~~~~irt 426 (690)
T KOG1243|consen 352 QYIEKYIDHLTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSKR-NLNGEL----LRYLARLQPDEHGGIRT 426 (690)
T ss_pred HhHHHHhhhcCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhchh-hhcHHH----HHHHHhhCccccCcccc
Confidence 334455444333 345677899999999999999999999999999999864 455444 44444444589999999
Q ss_pred HHHHHHhcccCCCCC---hH-HHHHHHHhcCCCCCHHHHHHHHhhCCCC----------cccHHHHHHhhCCCChHHHHH
Q 001827 143 FAVRSLSRFVNDSDN---SD-ILDLLLEVLPLEQNADVRKTIVLSLPPS----------NATSQAIIDCTLDVSESVRKA 208 (1009)
Q Consensus 143 qAv~aL~rlQ~~~~d---~~-v~~~ll~~l~~D~s~eVRraaL~~i~~~----------~~tl~~il~R~rDv~~~VRr~ 208 (1009)
--..+|+++...... .. .+.++...| .||=+--|.+.+.-+..+ .+-+|-+.-=+-|-+..||..
T Consensus 427 ntticlgki~~~l~~~~R~~vL~~aftral-kdpf~paR~a~v~~l~at~~~~~~~~va~kIlp~l~pl~vd~e~~vr~~ 505 (690)
T KOG1243|consen 427 NTTICLGKIAPHLAASVRKRVLASAFTRAL-KDPFVPARKAGVLALAATQEYFDQSEVANKILPSLVPLTVDPEKTVRDT 505 (690)
T ss_pred cceeeecccccccchhhhccccchhhhhhh-cCCCCCchhhhhHHHhhcccccchhhhhhhccccccccccCcccchhhH
Confidence 999999999422111 11 345666666 488888899988666544 234555555568999999999
Q ss_pred HHHHHh
Q 001827 209 AYCVLA 214 (1009)
Q Consensus 209 ay~~L~ 214 (1009)
++..+.
T Consensus 506 a~~~i~ 511 (690)
T KOG1243|consen 506 AEKAIR 511 (690)
T ss_pred HHHHHH
Confidence 999876
No 115
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=60.77 E-value=52 Score=36.73 Aligned_cols=64 Identities=20% Similarity=0.006 Sum_probs=40.8
Q ss_pred hcccCCCCHHHHHHHHHHHh--hHHhcCCcchHHHHHHHHHHHh---hCChhHHHHHHHHHHHHHHhhCC
Q 001827 527 LPGAKHVHLDVQRVAIRCLG--LFGLLENKPSEELVKQLRLSFV---KGCPTVSIMAGKALIDLGMWHGP 591 (1009)
Q Consensus 527 lPaV~~~~~~VR~~al~CLG--L~cLldk~~a~~~~~ll~~~~~---~~~~~vki~ALkaifDlll~hG~ 591 (1009)
=|.+.+.++.+|.+|+.||+ +..+-...+..+-+..+..-+. .+...+.. |++++.-++.+...
T Consensus 5 g~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~L~~~ev~~L~~F~~~rl~D~~~~~~-~l~gl~~L~~~~~~ 73 (262)
T PF14500_consen 5 GEYLTSEDPIIRAKALELLSEVLERLPPDFLSRQEVQVLLDFFCSRLDDHACVQP-ALKGLLALVKMKNF 73 (262)
T ss_pred hhhhCCCCHHHHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHHHHHhccHhhHHH-HHHHHHHHHhCcCC
Confidence 46788999999999999999 4444433444443333332222 34455554 48888888865553
No 116
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=59.88 E-value=3.2e+02 Score=34.65 Aligned_cols=36 Identities=14% Similarity=0.325 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHhccCCcchhHhHHHHHHHHHhcCC
Q 001827 77 FLEDFLKFLLVAAMAANKTARFRACQIISEIIMRLP 112 (1009)
Q Consensus 77 f~~~ll~~Ll~~~~akdk~VR~R~cqli~~ll~~l~ 112 (1009)
+.-.+++.|.-.=.-.|..+|-|-..++..|++...
T Consensus 257 L~vKl~rlLq~~p~~~D~~~r~~l~evl~~iLnk~~ 292 (938)
T KOG1077|consen 257 LQVKLLRLLQIYPTPEDPSTRARLNEVLERILNKAQ 292 (938)
T ss_pred HHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHhccc
Confidence 555667666666677899999999999999999865
No 117
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=59.09 E-value=34 Score=33.18 Aligned_cols=72 Identities=22% Similarity=0.324 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHHHhc-cCCcchhHhHHHHHHHHHhcCCCCCcCCHHHHHHHHHHHHHHhCCCChhHHHHHHHHHhcccC
Q 001827 76 EFLEDFLKFLLVAAM-AANKTARFRACQIISEIIMRLPDDTEVSDEVWDEVIECMKVKVGDKVSVIRTFAVRSLSRFVN 153 (1009)
Q Consensus 76 ~f~~~ll~~Ll~~~~-akdk~VR~R~cqli~~ll~~l~~~~~idedl~~~l~~~ll~Rl~DK~~~VR~qAv~aL~rlQ~ 153 (1009)
.++..++.+++.+.. ++..-.|.-+.-+++.+....+ +++++.+.+.+++......... ..+|+.+|..+.+
T Consensus 2 ~~l~~lLP~l~~~L~~s~~~d~~~a~ymIl~~La~k~~----L~~~~l~~l~~~i~~~~~~~~~--~~~~l~~L~~l~q 74 (121)
T PF12397_consen 2 DILPRLLPFLLKGLKSSSSPDLQAAAYMILSVLASKVP----LSDEVLNALMESILKNWTQETV--QRQALICLIVLCQ 74 (121)
T ss_pred cHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhhcC----CcHHHHHHHHHHHHhccccchh--HHHHHHHHHHHHH
Confidence 467889999999999 8888999998888888888876 9999999999999988887776 6678888887743
No 118
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=56.43 E-value=90 Score=39.46 Aligned_cols=212 Identities=10% Similarity=0.174 Sum_probs=116.8
Q ss_pred hHHHHHHHHHHHhhCCChhhHHHHHHHhhhhhhccccCchhhHHHHHHHHHHHhhc--chHHHHHHH---HHHHHHhccC
Q 001827 18 HNRKLKDLRAVRSKSPSTAQFSSAFFKTLTPLFTVQRRTASAERVVRFVSAFAATN--NDEFLEDFL---KFLLVAAMAA 92 (1009)
Q Consensus 18 H~k~~~~L~~l~~~~~~~~~F~~~F~~~l~~iL~~~k~~~~~dRvikFva~f~~~~--~~~f~~~ll---~~Ll~~~~ak 92 (1009)
-.-.+..|+++....-+.+.|-.-+...+..+|++..++ ..+++=|.-..+... +...+...| +..-+-..+.
T Consensus 34 ~~~KIeamK~ii~~mlnGe~~p~Llm~IiRfvlps~~~e--lKKLly~ywE~vPKt~~dgkl~~EMILvcna~RkDLQHP 111 (948)
T KOG1058|consen 34 DEVKIEAMKKIIALMLNGEDLPSLLMTIIRFVLPSRNHE--LKKLLYYYWELVPKTDSDGKLLHEMILVCNAYRKDLQHP 111 (948)
T ss_pred hHHHHHHHHHHHHHHHcCCCchHHHHHHhheeeccCchH--HHHHHHHHHHHccccCCCcccHHHHHHHHHHHhhhccCc
Confidence 344566677654433223566666777777777775443 556555444444321 223333322 2334456777
Q ss_pred CcchhHhHHHHHHHHHhcCCCCCcCCHHHHHHHHHHHHHHhCCCChhHHHHHHHHHhcccCC-----CCChHHHHHHHHh
Q 001827 93 NKTARFRACQIISEIIMRLPDDTEVSDEVWDEVIECMKVKVGDKVSVIRTFAVRSLSRFVND-----SDNSDILDLLLEV 167 (1009)
Q Consensus 93 dk~VR~R~cqli~~ll~~l~~~~~idedl~~~l~~~ll~Rl~DK~~~VR~qAv~aL~rlQ~~-----~~d~~v~~~ll~~ 167 (1009)
|-.||=-+.+++.. |. +.+|.+.++.+++.=+.-+.+-||.-|+.|+.-+-.- ++..+.+..++
T Consensus 112 NEyiRG~TLRFLck----Lk-----E~ELlepl~p~IracleHrhsYVRrNAilaifsIyk~~~~L~pDapeLi~~fL-- 180 (948)
T KOG1058|consen 112 NEYIRGSTLRFLCK----LK-----EPELLEPLMPSIRACLEHRHSYVRRNAILAIFSIYKNFEHLIPDAPELIESFL-- 180 (948)
T ss_pred hHhhcchhhhhhhh----cC-----cHHHhhhhHHHHHHHHhCcchhhhhhhheeehhHHhhhhhhcCChHHHHHHHH--
Confidence 88888777777665 44 3355666666666668889999999999998776422 22334555543
Q ss_pred cCCCCCHHHHHHHHhhCCCC--cccHHHHHHhhCCCC---hHHHHHHHHHHhccCCCCCCC-HHHHHHHHHHhhcCCCHH
Q 001827 168 LPLEQNADVRKTIVLSLPPS--NATSQAIIDCTLDVS---ESVRKAAYCVLANKFPLQSLS-IKHRTMILKRGLADRSEA 241 (1009)
Q Consensus 168 l~~D~s~eVRraaL~~i~~~--~~tl~~il~R~rDv~---~~VRr~ay~~L~~~v~~~~ls-i~qR~~LL~~GL~Dr~~~ 241 (1009)
..+..|.+.|.|...+.-. +.-+.++....-++- +.---.+.+.|.+..+ +... ..++++.|-.-|...+++
T Consensus 181 -~~e~DpsCkRNAFi~L~~~D~ErAl~Yl~~~idqi~~~~~~LqlViVE~Irkv~~-~~p~~~~~~i~~i~~lL~stssa 258 (948)
T KOG1058|consen 181 -LTEQDPSCKRNAFLMLFTTDPERALNYLLSNIDQIPSFNDSLQLVIVELIRKVCL-ANPAEKARYIRCIYNLLSSTSSA 258 (948)
T ss_pred -HhccCchhHHHHHHHHHhcCHHHHHHHHHhhHhhccCccHHHHHHHHHHHHHHHh-cCHHHhhHHHHHHHHHHhcCCch
Confidence 3566677778777666543 334555555554443 3333333333332111 2222 133445555555555555
Q ss_pred HHH
Q 001827 242 VSK 244 (1009)
Q Consensus 242 Vr~ 244 (1009)
|+-
T Consensus 259 V~f 261 (948)
T KOG1058|consen 259 VIF 261 (948)
T ss_pred hhh
Confidence 553
No 119
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=54.21 E-value=1.5e+02 Score=33.21 Aligned_cols=65 Identities=18% Similarity=0.291 Sum_probs=48.8
Q ss_pred HHHHHhccCCcchhHhHHHHHHHHHhcCCCCCcCCHHHHHHHHHHHHHHhCCCChhHHHHHHHHHhcc
Q 001827 84 FLLVAAMAANKTARFRACQIISEIIMRLPDDTEVSDEVWDEVIECMKVKVGDKVSVIRTFAVRSLSRF 151 (1009)
Q Consensus 84 ~Ll~~~~akdk~VR~R~cqli~~ll~~l~~~~~idedl~~~l~~~ll~Rl~DK~~~VR~qAv~aL~rl 151 (1009)
.|=..+.+.|..+|-|++++++.++..++.+ .++..--.-|..-+..|+.|... |..- +.||..|
T Consensus 3 ~Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~-~L~~~ev~~L~~F~~~rl~D~~~-~~~~-l~gl~~L 67 (262)
T PF14500_consen 3 SLGEYLTSEDPIIRAKALELLSEVLERLPPD-FLSRQEVQVLLDFFCSRLDDHAC-VQPA-LKGLLAL 67 (262)
T ss_pred chhhhhCCCCHHHHHHHHHHHHHHHHhCCHh-hccHHHHHHHHHHHHHHhccHhh-HHHH-HHHHHHH
Confidence 3446778999999999999999999999853 46776678889999999977653 4332 4444444
No 120
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=52.58 E-value=1e+02 Score=38.18 Aligned_cols=75 Identities=17% Similarity=0.093 Sum_probs=48.7
Q ss_pred ccHHHHHHhhhhcccCCCCHHHHHHHHHHHhhHHhcCCcc--hHHHHHHHH---HHHhhCChhHHHHHHHHHHHHHHhhC
Q 001827 516 AESAELLHSLLLPGAKHVHLDVQRVAIRCLGLFGLLENKP--SEELVKQLR---LSFVKGCPTVSIMAGKALIDLGMWHG 590 (1009)
Q Consensus 516 ~~l~~ll~sLIlPaV~~~~~~VR~~al~CLGL~cLldk~~--a~~~~~ll~---~~~~~~~~~vki~ALkaifDlll~hG 590 (1009)
|-+.+|+.+| .|-++|.|-.|...++..+|+.|...... +.+.+.+-+ ..+..-+-+++-.|....-=|--.-|
T Consensus 684 pPi~~ilP~l-tPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG~Is~aiG 762 (975)
T COG5181 684 PPISGILPSL-TPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMRICFELVDSLKSWNKEIRRNATETFGCISRAIG 762 (975)
T ss_pred Cchhhccccc-cHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhHHhhcC
Confidence 4578999887 89999999999999999999999997642 234444322 11112234555555544444444444
Q ss_pred C
Q 001827 591 P 591 (1009)
Q Consensus 591 ~ 591 (1009)
+
T Consensus 763 P 763 (975)
T COG5181 763 P 763 (975)
T ss_pred H
Confidence 3
No 121
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=51.66 E-value=5.4e+02 Score=32.41 Aligned_cols=176 Identities=16% Similarity=0.169 Sum_probs=112.2
Q ss_pred HHHHHHHHHHHhccCCcchhHhHHHHHH-HHHhcCCCCCcCCHH---HHHHHHHHHHHHhCCCChhHHHHHHHHHhcc--
Q 001827 78 LEDFLKFLLVAAMAANKTARFRACQIIS-EIIMRLPDDTEVSDE---VWDEVIECMKVKVGDKVSVIRTFAVRSLSRF-- 151 (1009)
Q Consensus 78 ~~~ll~~Ll~~~~akdk~VR~R~cqli~-~ll~~l~~~~~ided---l~~~l~~~ll~Rl~DK~~~VR~qAv~aL~rl-- 151 (1009)
+..+.++|--+.+.+.+.-|+|..-+=. .+++..+-..+|+.. +-......+..-..=|...+|..|..++-.+
T Consensus 327 ~~~~~ellf~~~sl~a~~~~~~~i~l~e~~i~~~~~~~~~i~~~k~~l~~~t~~~l~~~~~~kd~~~~aaa~l~~~s~sr 406 (678)
T KOG1293|consen 327 LKTTTELLFICASLAASDEKYRLILLNETLILNHLEYGLEISLKKEILETTTESHLMCLPPIKDHDFVAAALLCLKSFSR 406 (678)
T ss_pred hhhHHHHHHHHHHHhhcchhhhHHHhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHH
Confidence 3344555556666667777888553222 233444434445432 1122334444455667778888887776544
Q ss_pred -----cCCCCChHHHHHHHHhcCCCCCHHHHHHHHhhC---CC----------CcccHHHHHHhhCCCChHHHHHHHHHH
Q 001827 152 -----VNDSDNSDILDLLLEVLPLEQNADVRKTIVLSL---PP----------SNATSQAIIDCTLDVSESVRKAAYCVL 213 (1009)
Q Consensus 152 -----Q~~~~d~~v~~~ll~~l~~D~s~eVRraaL~~i---~~----------~~~tl~~il~R~rDv~~~VRr~ay~~L 213 (1009)
..+.++.++.+-|+.++ +||+--|-.+++..| .+ ...-+..+++-+.|-+..+|+.+.-+|
T Consensus 407 sV~aL~tg~~~~dv~~plvqll-~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~L 485 (678)
T KOG1293|consen 407 SVSALRTGLKRNDVAQPLVQLL-MDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILESMLTDPDFNSRANSLWVL 485 (678)
T ss_pred HHHHHHcCCccchhHHHHHHHh-hCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHH
Confidence 34566678888888888 799999999988554 32 246688899999999999999988888
Q ss_pred hcc-CCCCC-----CCHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHH
Q 001827 214 ANK-FPLQS-----LSIKHRTMILKRGLADRSEAVSKECLKLMKDHWL 255 (1009)
Q Consensus 214 ~~~-v~~~~-----lsi~qR~~LL~~GL~Dr~~~Vr~a~~~~L~~~Wl 255 (1009)
..- +.-+. +-.+--...|-.--+|.+..|++.|-++|. +..
T Consensus 486 r~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllR-Nl~ 532 (678)
T KOG1293|consen 486 RHLMFNCDEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLR-NLT 532 (678)
T ss_pred HHHHhcchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHH-Hhh
Confidence 731 11110 001112345555668999999999999884 443
No 122
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=50.70 E-value=4.4e+02 Score=35.53 Aligned_cols=176 Identities=15% Similarity=0.132 Sum_probs=112.6
Q ss_pred hHHHHHHHHHHHHHhcc-CCcchhHhHHHHHHHHHh-------------------cCCCCCcC----C---HHHHHHHHH
Q 001827 75 DEFLEDFLKFLLVAAMA-ANKTARFRACQIISEIIM-------------------RLPDDTEV----S---DEVWDEVIE 127 (1009)
Q Consensus 75 ~~f~~~ll~~Ll~~~~a-kdk~VR~R~cqli~~ll~-------------------~l~~~~~i----d---edl~~~l~~ 127 (1009)
.-|.++||-+|-..... ....||+=--.-|+.+-. .+..+... + ..|.+.+..
T Consensus 502 niF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~~~V~~ 581 (1431)
T KOG1240|consen 502 NIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAYRFLELTQELRQAGMLNDPNSETAPEQNYNTELQALHHTVEQ 581 (1431)
T ss_pred hhhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHHHHHHHHHHHHHHhcccccCcccccccccccchHHHHHHHHHHH
Confidence 34899999888887776 455555432222222211 11111111 1 136677777
Q ss_pred HHHHHhCCCChhHHHH---HHHHHhcccCCCCChH-HHHHHHHhcCCCCCHHHHHHHHhhCC----------CCcccHHH
Q 001827 128 CMKVKVGDKVSVIRTF---AVRSLSRFVNDSDNSD-ILDLLLEVLPLEQNADVRKTIVLSLP----------PSNATSQA 193 (1009)
Q Consensus 128 ~ll~Rl~DK~~~VR~q---Av~aL~rlQ~~~~d~~-v~~~ll~~l~~D~s~eVRraaL~~i~----------~~~~tl~~ 193 (1009)
....-+-|-.|.||.. ++.-||.|-+-.+.+| ++..|+.-| ||..|..|-+-..+|+ .++--+|.
T Consensus 582 ~v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk~ksND~iLshLiTfL-NDkDw~LR~aFfdsI~gvsi~VG~rs~seyllPL 660 (1431)
T KOG1240|consen 582 MVSSLLSDSPPIVKRALLESIIPLCVFFGKEKSNDVILSHLITFL-NDKDWRLRGAFFDSIVGVSIFVGWRSVSEYLLPL 660 (1431)
T ss_pred HHHHHHcCCchHHHHHHHHHHHHHHHHhhhcccccchHHHHHHHh-cCccHHHHHHHHhhccceEEEEeeeeHHHHHHHH
Confidence 7778889999999964 5566666655555445 778888888 7999999999999998 23445789
Q ss_pred HHHhhCCCChHHHHHHHHHHhc---cCCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHHHH
Q 001827 194 IIDCTLDVSESVRKAAYCVLAN---KFPLQSLSIKHRTMILKRGLADRSEAVSKECLKLMK 251 (1009)
Q Consensus 194 il~R~rDv~~~VRr~ay~~L~~---~v~~~~lsi~qR~~LL~~GL~Dr~~~Vr~a~~~~L~ 251 (1009)
+..-+-|-.+.|=..|...|.- .-.++.....+..+.+---|--.+.=||.++..++.
T Consensus 661 l~Q~ltD~EE~Viv~aL~~ls~Lik~~ll~K~~v~~i~~~v~PlL~hPN~WIR~~~~~iI~ 721 (1431)
T KOG1240|consen 661 LQQGLTDGEEAVIVSALGSLSILIKLGLLRKPAVKDILQDVLPLLCHPNLWIRRAVLGIIA 721 (1431)
T ss_pred HHHhccCcchhhHHHHHHHHHHHHHhcccchHHHHHHHHhhhhheeCchHHHHHHHHHHHH
Confidence 8889999999988777775542 223444444444444444444555666666666553
No 123
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=49.27 E-value=3.1e+02 Score=36.60 Aligned_cols=156 Identities=17% Similarity=0.275 Sum_probs=91.4
Q ss_pred HHHHHHHHHhhCCChhhHHHHHHHhhhh-hhccccCch----hhHHHHHHHHHHHhhc---c---hHHHHHHHHHHHHHh
Q 001827 21 KLKDLRAVRSKSPSTAQFSSAFFKTLTP-LFTVQRRTA----SAERVVRFVSAFAATN---N---DEFLEDFLKFLLVAA 89 (1009)
Q Consensus 21 ~~~~L~~l~~~~~~~~~F~~~F~~~l~~-iL~~~k~~~----~~dRvikFva~f~~~~---~---~~f~~~ll~~Ll~~~ 89 (1009)
..+.|+.+++..+ ..++.-..+.+-- ||..+.... .+--++.|++.-..+. + ..-++.++.-|..|.
T Consensus 717 rl~~L~~L~~~~~--~e~~~~i~k~I~EvIL~~Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~~~~~lnefl~~Isagl 794 (1176)
T KOG1248|consen 717 RLKCLKRLLKLLS--AEHCDLIPKLIPEVILSLKEVNVKARRNAFALLVFIGAIQSSLDDGNEPASAILNEFLSIISAGL 794 (1176)
T ss_pred HHHHHHHHHHhcc--HHHHHHHHHHHHHHHHhcccccHHHHhhHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHhhh
Confidence 3455556665554 1333333333333 333433332 3444566666422221 1 346777887777775
Q ss_pred ccCCcchhHhHHHHHHHHHhcCCCCCcCCHHHHHHHHHHHHHHhCCCChhHHHHHHHHHhcccC-CCCC------hHHHH
Q 001827 90 MAANKTARFRACQIISEIIMRLPDDTEVSDEVWDEVIECMKVKVGDKVSVIRTFAVRSLSRFVN-DSDN------SDILD 162 (1009)
Q Consensus 90 ~akdk~VR~R~cqli~~ll~~l~~~~~idedl~~~l~~~ll~Rl~DK~~~VR~qAv~aL~rlQ~-~~~d------~~v~~ 162 (1009)
--....++-+..--++.++-.-+. .+|++...++.+.+-.-|.-+.+.||.-||..+..+.. .|+. +.++.
T Consensus 795 ~gd~~~~~as~Ivai~~il~e~~~--~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~ 872 (1176)
T KOG1248|consen 795 VGDSTRVVASDIVAITHILQEFKN--ILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLP 872 (1176)
T ss_pred cccHHHHHHHHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHH
Confidence 443444444433444556555543 68999888888888888999999999999999999852 2322 12444
Q ss_pred HHHHhcCCCCCHHHHHHHH
Q 001827 163 LLLEVLPLEQNADVRKTIV 181 (1009)
Q Consensus 163 ~ll~~l~~D~s~eVRraaL 181 (1009)
.++. |.+|.+..||.++-
T Consensus 873 sll~-ls~d~k~~~r~Kvr 890 (1176)
T KOG1248|consen 873 SLLA-LSHDHKIKVRKKVR 890 (1176)
T ss_pred HHHH-HHHhhhHHHHHHHH
Confidence 4444 34677777777754
No 124
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=48.91 E-value=5.1e+02 Score=32.48 Aligned_cols=190 Identities=15% Similarity=0.211 Sum_probs=124.6
Q ss_pred HHHHHHHHHHHHhccCCcchhHhHHHHHHHHHhcCCCCCcCCHHHHHHHHHHHHHHhCCCChhHHHHHHHHHhcccCCCC
Q 001827 77 FLEDFLKFLLVAAMAANKTARFRACQIISEIIMRLPDDTEVSDEVWDEVIECMKVKVGDKVSVIRTFAVRSLSRFVNDSD 156 (1009)
Q Consensus 77 f~~~ll~~Ll~~~~akdk~VR~R~cqli~~ll~~l~~~~~idedl~~~l~~~ll~Rl~DK~~~VR~qAv~aL~rlQ~~~~ 156 (1009)
-++.++-.|..-+..|...|--..+-++..|-.+-++ -+...=|..|-=.|++-|+--+..+|.-|+..++.+...-.
T Consensus 685 Pi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~pe--yi~~rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG~Is~aiG 762 (975)
T COG5181 685 PISGILPSLTPILRNKHQKVVANTIALVGTICMNSPE--YIGVREWMRICFELVDSLKSWNKEIRRNATETFGCISRAIG 762 (975)
T ss_pred chhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcc--cCCHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhHHhhcC
Confidence 3677788888888888899999999999988887775 67777788888888888888899999999999988864455
Q ss_pred ChHHHHHHHHhcCCCCCHHHHHHHHhhCCC------CcccHHHHHHhhCCCChHHHHHHHHHHhc---cCCCCCCC-HHH
Q 001827 157 NSDILDLLLEVLPLEQNADVRKTIVLSLPP------SNATSQAIIDCTLDVSESVRKAAYCVLAN---KFPLQSLS-IKH 226 (1009)
Q Consensus 157 d~~v~~~ll~~l~~D~s~eVRraaL~~i~~------~~~tl~~il~R~rDv~~~VRr~ay~~L~~---~v~~~~ls-i~q 226 (1009)
+.+|+..|++-|.. ....-|-.--..|.+ .-..+|.++.--+--+..|-.-+...++- .++-.++. +.-
T Consensus 763 PqdvL~~LlnnLkv-qeRq~RvctsvaI~iVae~cgpfsVlP~lm~dY~TPe~nVQnGvLkam~fmFeyig~~s~dYvy~ 841 (975)
T COG5181 763 PQDVLDILLNNLKV-QERQQRVCTSVAISIVAEYCGPFSVLPTLMSDYETPEANVQNGVLKAMCFMFEYIGQASLDYVYS 841 (975)
T ss_pred HHHHHHHHHhcchH-HHHHhhhhhhhhhhhhHhhcCchhhHHHHHhcccCchhHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 67888888877742 111122111111211 13457777765444445555544444331 11111110 122
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHHHHHhhhcC--CCHHHHhhhcC
Q 001827 227 RTMILKRGLADRSEAVSKECLKLMKDHWLAKHCN--GNPIELLKYLD 271 (1009)
Q Consensus 227 R~~LL~~GL~Dr~~~Vr~a~~~~L~~~Wl~~~~~--gdi~~LL~~LD 271 (1009)
..-+|...|.||++.-|.-+.+.+. +..-+ |- |+.-.++|.|+
T Consensus 842 itPlleDAltDrD~vhRqta~nvI~-Hl~Ln-c~gtg~eda~IHLlN 886 (975)
T COG5181 842 ITPLLEDALTDRDPVHRQTAMNVIR-HLVLN-CPGTGDEDAAIHLLN 886 (975)
T ss_pred hhHHHHhhhcccchHHHHHHHHHHH-HHhcC-CCCcccHHHHHHHHH
Confidence 3568999999999999999999885 44443 43 55555555554
No 125
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=48.09 E-value=1.3e+02 Score=28.19 Aligned_cols=66 Identities=11% Similarity=0.078 Sum_probs=36.2
Q ss_pred HHHHHHhccCCcchhHhHHHHHHHHHhcCCCCCcCCHHHHHHHHHHHHHHhCCCChhHHHHHHHHHhccc
Q 001827 83 KFLLVAAMAANKTARFRACQIISEIIMRLPDDTEVSDEVWDEVIECMKVKVGDKVSVIRTFAVRSLSRFV 152 (1009)
Q Consensus 83 ~~Ll~~~~akdk~VR~R~cqli~~ll~~l~~~~~idedl~~~l~~~ll~Rl~DK~~~VR~qAv~aL~rlQ 152 (1009)
+..+.......-.||-.....+..++..-. .+......+...++.-++|.++-|=.-||.+|+-|.
T Consensus 6 ~~al~~L~dp~~PvRa~gL~~L~~Li~~~~----~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La 71 (92)
T PF10363_consen 6 QEALSDLNDPLPPVRAHGLVLLRKLIESKS----EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALA 71 (92)
T ss_pred HHHHHHccCCCcchHHHHHHHHHHHHHcCC----cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHH
Confidence 334444455556666666666666665543 112223455555555566666666666666666664
No 126
>PLN03237 DNA topoisomerase 2; Provisional
Probab=47.46 E-value=16 Score=49.29 Aligned_cols=33 Identities=30% Similarity=0.212 Sum_probs=21.3
Q ss_pred CCCCCCCCCCCCCCccCCCCCCcccchhhhhhHH
Q 001827 938 ETSSDEEDSPTSAQYVVPSNPGSISTRSERASKT 971 (1009)
Q Consensus 938 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 971 (1009)
+++++||.++.|+.|-+| ..-.+..|+|||-+-
T Consensus 1409 ~~~~~~~~~~~s~~~~~~-~~~~~~~r~~~~~r~ 1441 (1465)
T PLN03237 1409 ETESSENVSGSSSSEKDE-IDVSAKPRPQRANRK 1441 (1465)
T ss_pred cccCccccCCCCcccccc-cccccCCcchhhhcC
Confidence 344555666666666666 344777899998664
No 127
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=47.33 E-value=55 Score=30.68 Aligned_cols=68 Identities=12% Similarity=-0.025 Sum_probs=49.1
Q ss_pred ccCCCCHHHHHHHHHHHhhHHhcCC-c--chHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHhhCCchhhh
Q 001827 529 GAKHVHLDVQRVAIRCLGLFGLLEN-K--PSEELVKQLRLSFVKGCPTVSIMAGKALIDLGMWHGPQEVDK 596 (1009)
Q Consensus 529 aV~~~~~~VR~~al~CLGL~cLldk-~--~a~~~~~ll~~~~~~~~~~vki~ALkaifDlll~hG~~~ld~ 596 (1009)
.+..+.++||..|+.-|+-...-.. . .....+.+|...+..++.-|-..|+|++.-+.-.|+.+.++.
T Consensus 11 ~L~dp~~PvRa~gL~~L~~Li~~~~~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~~vl~~ 81 (92)
T PF10363_consen 11 DLNDPLPPVRAHGLVLLRKLIESKSEPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPDEVLPI 81 (92)
T ss_pred HccCCCcchHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChHHHHHH
Confidence 3467789999999988876554433 1 112345666666667788999999999999999997655543
No 128
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=45.74 E-value=3.4e+02 Score=34.88 Aligned_cols=91 Identities=23% Similarity=0.289 Sum_probs=66.5
Q ss_pred HHHHHHHHHhccCCcchhHhHHHHHHHHHhcCCCCCcCCHHHH--HHHHHHHHHHhCCCChhHHHHHHHHHhcccCCCCC
Q 001827 80 DFLKFLLVAAMAANKTARFRACQIISEIIMRLPDDTEVSDEVW--DEVIECMKVKVGDKVSVIRTFAVRSLSRFVNDSDN 157 (1009)
Q Consensus 80 ~ll~~Ll~~~~akdk~VR~R~cqli~~ll~~l~~~~~idedl~--~~l~~~ll~Rl~DK~~~VR~qAv~aL~rlQ~~~~d 157 (1009)
..+..|+...+..|..||+-++|+|..++.+.|. ++-+-+. =.=+..|+.-|+|-.-.||-.|++-|+.+-.+...
T Consensus 122 d~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~--e~q~~ll~~P~gIS~lmdlL~DsrE~IRNe~iLlL~eL~k~n~~ 199 (970)
T KOG0946|consen 122 DNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPT--ELQDALLVSPMGISKLMDLLRDSREPIRNEAILLLSELVKDNSS 199 (970)
T ss_pred hhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCH--HHHHHHHHCchhHHHHHHHHhhhhhhhchhHHHHHHHHHccCch
Confidence 3456688888999999999999999999999884 2211110 01146678889999999999999999999755443
Q ss_pred -------hHHHHHHHHhcCCCC
Q 001827 158 -------SDILDLLLEVLPLEQ 172 (1009)
Q Consensus 158 -------~~v~~~ll~~l~~D~ 172 (1009)
..+.+.|+.++...+
T Consensus 200 IQKlVAFENaFerLfsIIeeEG 221 (970)
T KOG0946|consen 200 IQKLVAFENAFERLFSIIEEEG 221 (970)
T ss_pred HHHHHHHHHHHHHHHHHHHhcC
Confidence 124566777776555
No 129
>smart00567 EZ_HEAT E-Z type HEAT repeats. Present in subunits of cyanobacterial phycocyanin lyase, and other proteins. Probable scaffolding role.
Probab=45.72 E-value=27 Score=25.17 Aligned_cols=28 Identities=18% Similarity=0.318 Sum_probs=21.4
Q ss_pred hhHHHHHHHHHhcccCCCCChHHHHHHHHhcC
Q 001827 138 SVIRTFAVRSLSRFVNDSDNSDILDLLLEVLP 169 (1009)
Q Consensus 138 ~~VR~qAv~aL~rlQ~~~~d~~v~~~ll~~l~ 169 (1009)
+.||..|+.+|+++. +.+.+..|+..+.
T Consensus 1 ~~vR~~aa~aLg~~~----~~~a~~~L~~~l~ 28 (30)
T smart00567 1 PLVRHEAAFALGQLG----DEEAVPALIKALE 28 (30)
T ss_pred CHHHHHHHHHHHHcC----CHhHHHHHHHHhc
Confidence 369999999999995 3356677777774
No 130
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=42.68 E-value=84 Score=42.58 Aligned_cols=106 Identities=27% Similarity=0.463 Sum_probs=69.1
Q ss_pred chHHHHHHHHHHHHHhccCCcchhHhHHHHHHHHHhcCCCCCcCCH---HHHHHHHHHHHHHhCCCChhHHHH---HHHH
Q 001827 74 NDEFLEDFLKFLLVAAMAANKTARFRACQIISEIIMRLPDDTEVSD---EVWDEVIECMKVKVGDKVSVIRTF---AVRS 147 (1009)
Q Consensus 74 ~~~f~~~ll~~Ll~~~~akdk~VR~R~cqli~~ll~~l~~~~~ide---dl~~~l~~~ll~Rl~DK~~~VR~q---Av~a 147 (1009)
.+++++.+++-|+.+..++.=.||--||--++.++.+-+.+ ++-+ ++|..+... +-|-.-+||.- |..+
T Consensus 1033 vd~y~neIl~eLL~~lt~kewRVReasclAL~dLl~g~~~~-~~~e~lpelw~~~fRv----mDDIKEsVR~aa~~~~~~ 1107 (1702)
T KOG0915|consen 1033 VDEYLNEILDELLVNLTSKEWRVREASCLALADLLQGRPFD-QVKEKLPELWEAAFRV----MDDIKESVREAADKAARA 1107 (1702)
T ss_pred HHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHcCCChH-HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
Confidence 47899999999999999999999999999999999996632 2222 344443333 23444588876 4566
Q ss_pred HhcccC---CCCC----hH----HHHHHHHhcCCCCCHHHHHHHHhhC
Q 001827 148 LSRFVN---DSDN----SD----ILDLLLEVLPLEQNADVRKTIVLSL 184 (1009)
Q Consensus 148 L~rlQ~---~~~d----~~----v~~~ll~~l~~D~s~eVRraaL~~i 184 (1009)
|+++.- +..+ .. +.-.|++-=-.-.-.||||..+..+
T Consensus 1108 lsKl~vr~~d~~~~~~~~~~l~~iLPfLl~~gims~v~evr~~si~tl 1155 (1702)
T KOG0915|consen 1108 LSKLCVRICDVTNGAKGKEALDIILPFLLDEGIMSKVNEVRRFSIGTL 1155 (1702)
T ss_pred HHHHHhhhcccCCcccHHHHHHHHHHHHhccCcccchHHHHHHHHHHH
Confidence 677652 2222 12 2333332211246788999888543
No 131
>PF03130 HEAT_PBS: PBS lyase HEAT-like repeat; InterPro: IPR004155 These proteins contain a short bi-helical repeat that is related to HEAT. Cyanobacteria and red algae harvest light energy using macromolecular complexes known as phycobilisomes (PBS), peripherally attached to the photosynthetic membrane. The major components of PBS are the phycobiliproteins. These heterodimeric proteins are covalently attached to phycobilins: open-chain tetrapyrrole chromophores, which function as the photosynthetic light-harvesting pigments. Phycobiliproteins differ in sequence and in the nature and number of attached phycobilins to each of their subunits. These proteins include the lyase enzymes that specifically attach particular phycobilins to apophycobiliprotein subunits. The most comprehensively studied of these is the CpcE/Flyase P31967 from SWISSPROT, P31968 from SWISSPROT, which attaches phycocyanobilin (PCB) to the alpha subunit of apophycocyanin []. Similarly, MpeU/V attaches phycoerythrobilin to phycoerythrin II, while CpeY/Z is thought to be involved in phycoerythrobilin (PEB) attachment to phycoerythrin (PE) I (PEs I and II differ in sequence and in the number of attached molecules of PEB: PE I has five, PE II has six) []. All the reactions of the above lyases involve an apoprotein cysteine SH addition to a terminal delta 3,3'-double bond. Such a reaction is not possible in the case of phycoviolobilin (PVB), the phycobilin of alpha-phycoerythrocyanin (alpha-PEC). It is thought that in this case, PCB, not PVB, is first added to apo-alpha-PEC, and is then isomerized to PVB. The addition reaction has been shown to occur in the presence of either of the components of alpha-PEC-PVB lyase PecE or PecF (or both). The isomerisation reaction occurs only when both PecE and PecF components are present, i.e. the PecE/F phycobiliprotein lyase is also a phycobilin isomerase []. Another member of this family is the NblB protein, whose similarity to the phycobiliprotein lyases was previously noted []. This constitutively expressed protein is not known to have any lyase activity. It is thought to be involved in the coordination of PBS degradation with environmental nutrient limitation. It has been suggested that the similarity of NblB to the phycobiliprotein lyases is due to the ability to bind tetrapyrrole phycobilins via the common repeated motif [].; PDB: 1TE4_A.
Probab=41.33 E-value=39 Score=24.15 Aligned_cols=25 Identities=28% Similarity=0.456 Sum_probs=18.5
Q ss_pred HHHHHHHHHhcccCCCCChHHHHHHHHhc
Q 001827 140 IRTFAVRSLSRFVNDSDNSDILDLLLEVL 168 (1009)
Q Consensus 140 VR~qAv~aL~rlQ~~~~d~~v~~~ll~~l 168 (1009)
||..|+.+|+.+++ ...+..|+..|
T Consensus 1 VR~~Aa~aLg~igd----~~ai~~L~~~L 25 (27)
T PF03130_consen 1 VRRAAARALGQIGD----PRAIPALIEAL 25 (27)
T ss_dssp HHHHHHHHHGGG-S----HHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCC----HHHHHHHHHHh
Confidence 89999999999973 45666666655
No 132
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=40.44 E-value=64 Score=31.83 Aligned_cols=69 Identities=19% Similarity=0.310 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHhccCCcchhHhHHHHHHHHHhcCCCCCcCCHHHHHH--HHHHHHHHhCCCChhHHHHHHHHHhcc
Q 001827 76 EFLEDFLKFLLVAAMAANKTARFRACQIISEIIMRLPDDTEVSDEVWDE--VIECMKVKVGDKVSVIRTFAVRSLSRF 151 (1009)
Q Consensus 76 ~f~~~ll~~Ll~~~~akdk~VR~R~cqli~~ll~~l~~~~~idedl~~~--l~~~ll~Rl~DK~~~VR~qAv~aL~rl 151 (1009)
..+..|++.|- .+.|+.+=-=+|.=|+.++...|. ...+.+. .+..++.-+...+|.||-+|..|+.++
T Consensus 43 ~llk~L~~lL~---~s~d~~~laVac~Dig~~vr~~p~----gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQkl 113 (119)
T PF11698_consen 43 ELLKKLIKLLD---KSDDPTTLAVACHDIGEFVRHYPN----GRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKL 113 (119)
T ss_dssp HHHHHHHHHH----SHHHHHHHHHHHHHHHHHHHH-GG----GHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHc---cCCCcceeehhhcchHHHHHHChh----HHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 34555554442 333666666688889998888874 2333333 366677778889999999999998876
No 133
>PF14222 MOR2-PAG1_N: Cell morphogenesis N-terminal
Probab=40.34 E-value=2.3e+02 Score=35.19 Aligned_cols=113 Identities=17% Similarity=0.211 Sum_probs=65.1
Q ss_pred HHHHHHHHHhhC-CC---hhhHHHHHHHhhhhhhccccCchhhHHHHHHHHHHHhhcchHHHHHHHHHHHHHhccCCcch
Q 001827 21 KLKDLRAVRSKS-PS---TAQFSSAFFKTLTPLFTVQRRTASAERVVRFVSAFAATNNDEFLEDFLKFLLVAAMAANKTA 96 (1009)
Q Consensus 21 ~~~~L~~l~~~~-~~---~~~F~~~F~~~l~~iL~~~k~~~~~dRvikFva~f~~~~~~~f~~~ll~~Ll~~~~akdk~V 96 (1009)
.+..|.+++.+. .+ +.+|++.|...|.++-...+.+...-...+ ++..+...+..+.. |.|..
T Consensus 130 Fm~~l~~~f~~~h~~~~ik~A~~~~l~~lLlPvA~~~~~evn~P~W~~------------~v~~i~~~~~~~~~-K~khw 196 (552)
T PF14222_consen 130 FMQSLAKFFLEAHKKSDIKHAYCEVLVELLLPVAATATAEVNHPKWKE------------AVETIYPRAAKMMS-KPKHW 196 (552)
T ss_pred HHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcccccccccHHHH------------HHHHHHHHHHHHHh-Ccchh
Confidence 344555555444 11 224555555555555444444433233333 34444444444333 23333
Q ss_pred hHhHHHHHHHHHhcCCCCCcCCHHHHH-HHHHHHHHHhCCCChhHHHHHHHHHhcc
Q 001827 97 RFRACQIISEIIMRLPDDTEVSDEVWD-EVIECMKVKVGDKVSVIRTFAVRSLSRF 151 (1009)
Q Consensus 97 R~R~cqli~~ll~~l~~~~~idedl~~-~l~~~ll~Rl~DK~~~VR~qAv~aL~rl 151 (1009)
-. +--|+..+|.--+. +.=-+-|. .+.+.+..+++|| ..|.-|..||+||
T Consensus 197 ~~-afPL~t~lLCvS~~--e~F~~~W~~~~i~~~~~klKdk--~~r~~~l~~l~RL 247 (552)
T PF14222_consen 197 NV-AFPLVTTLLCVSPK--EFFLSNWLPSLIESLISKLKDK--ETRPVALECLSRL 247 (552)
T ss_pred hh-HHHHHHHHHhcCcH--HHHHHHHHHHHHHHHHhhcCCh--hhhHHHHHHHHHH
Confidence 32 35566666665553 33345678 7999999999999 8899999999999
No 134
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=40.08 E-value=1e+02 Score=34.55 Aligned_cols=110 Identities=15% Similarity=0.236 Sum_probs=73.8
Q ss_pred HHHHHHHHHHHHHhccCCcchhHhHHHHHHHHHhcCCCCC---cCCHHHHHHHHHHHHHHhC--------CCChhHHHHH
Q 001827 76 EFLEDFLKFLLVAAMAANKTARFRACQIISEIIMRLPDDT---EVSDEVWDEVIECMKVKVG--------DKVSVIRTFA 144 (1009)
Q Consensus 76 ~f~~~ll~~Ll~~~~akdk~VR~R~cqli~~ll~~l~~~~---~idedl~~~l~~~ll~Rl~--------DK~~~VR~qA 144 (1009)
.....++-.+|.....-+..+|.+.|+++..++.+++... -.+-.+.+.+.+++..-+. |..+.+=..|
T Consensus 115 ~~~~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~a 194 (282)
T PF10521_consen 115 QHWPLIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAA 194 (282)
T ss_pred HhhhHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHH
Confidence 3555667778888888899999999999999999988532 2244566667777777777 6666666666
Q ss_pred HHHHhcc---cC-CCCC------hHHH-HHHHHhcCCCCC---HHHHHHHHhhCC
Q 001827 145 VRSLSRF---VN-DSDN------SDIL-DLLLEVLPLEQN---ADVRKTIVLSLP 185 (1009)
Q Consensus 145 v~aL~rl---Q~-~~~d------~~v~-~~ll~~l~~D~s---~eVRraaL~~i~ 185 (1009)
.-||-.| +. ++++ ++++ +.++..+.+-++ +.+|...+..++
T Consensus 195 y~~L~~L~~~~~~~~~~~r~~~l~~~l~e~IL~~~~~~~~~~~~~l~~~ll~~l~ 249 (282)
T PF10521_consen 195 YPALLSLLKTQENDDSNPRSTWLDKILREGILSSMEHESSFSYPRLRTVLLQQLP 249 (282)
T ss_pred HHHHHHHHHhhccCCcccchHHHHHHHHHHHhhhceeccccCchhHHHHHHHHHH
Confidence 6666665 21 1111 1233 336666666666 777777776654
No 135
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=38.48 E-value=6.7e+02 Score=28.83 Aligned_cols=36 Identities=17% Similarity=0.218 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHhccCCcchhHhHHHHHHHHHhcCC
Q 001827 77 FLEDFLKFLLVAAMAANKTARFRACQIISEIIMRLP 112 (1009)
Q Consensus 77 f~~~ll~~Ll~~~~akdk~VR~R~cqli~~ll~~l~ 112 (1009)
+++.=++.+.++.+++...+.--+.+|+..|+..-|
T Consensus 53 iL~~~~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~ 88 (330)
T PF11707_consen 53 ILQNHLKLLYRSLSSSKPSLTNPALRLLTAIVSFDG 88 (330)
T ss_pred HHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHccCC
Confidence 344447788888888887777788888888888433
No 136
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=37.54 E-value=1.7e+02 Score=37.64 Aligned_cols=102 Identities=19% Similarity=0.184 Sum_probs=76.7
Q ss_pred HHHHHHHH-HhccCCcc---hhHhHHHHHHHHHhcCCCCCcCCHHHHHHHHHHHHHHhCCCChhHHHHHHHHHhcccCCC
Q 001827 80 DFLKFLLV-AAMAANKT---ARFRACQIISEIIMRLPDDTEVSDEVWDEVIECMKVKVGDKVSVIRTFAVRSLSRFVNDS 155 (1009)
Q Consensus 80 ~ll~~Ll~-~~~akdk~---VR~R~cqli~~ll~~l~~~~~idedl~~~l~~~ll~Rl~DK~~~VR~qAv~aL~rlQ~~~ 155 (1009)
.++.-|.. +.+.|+|. -|.++=..|-.++...| ++--.-++.|....+.-++|-+..-|+-+..+|+.+.+-.
T Consensus 802 ~il~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~G---el~~~y~~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~ 878 (982)
T KOG4653|consen 802 DILPDLSEEYLSEKKKLQTDYRLKVGEAILKVAQALG---ELVFKYKAVLINTFLSGVREPDHEFRASSLANLGQLCQLL 878 (982)
T ss_pred hhHHHHHHHHHhcccCCCccceehHHHHHHHHHHHhc---cHHHHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHHHHHH
Confidence 34555555 33344443 58888899999999999 5777778888999999899888888999988888875321
Q ss_pred ----CC--hHHHHHHHHhcCCCCCHHHHHHHHhhC
Q 001827 156 ----DN--SDILDLLLEVLPLEQNADVRKTIVLSL 184 (1009)
Q Consensus 156 ----~d--~~v~~~ll~~l~~D~s~eVRraaL~~i 184 (1009)
.| .+++..++.+.+.|.+.-|||+|+.=|
T Consensus 879 a~~vsd~~~ev~~~Il~l~~~d~s~~vRRaAv~li 913 (982)
T KOG4653|consen 879 AFQVSDFFHEVLQLILSLETTDGSVLVRRAAVHLL 913 (982)
T ss_pred hhhhhHHHHHHHHHHHHHHccCCchhhHHHHHHHH
Confidence 12 257788888889999999999998544
No 137
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=37.46 E-value=4.3e+02 Score=33.79 Aligned_cols=156 Identities=15% Similarity=0.152 Sum_probs=95.5
Q ss_pred HhccCCcchhHhHHHHHHHHHhcCCCCCcCCHHHHHHHHHHHHHHhCCCChhHHHHHHHHHhccc-CCCCChHHHHHHHH
Q 001827 88 AAMAANKTARFRACQIISEIIMRLPDDTEVSDEVWDEVIECMKVKVGDKVSVIRTFAVRSLSRFV-NDSDNSDILDLLLE 166 (1009)
Q Consensus 88 ~~~akdk~VR~R~cqli~~ll~~l~~~~~idedl~~~l~~~ll~Rl~DK~~~VR~qAv~aL~rlQ-~~~~d~~v~~~ll~ 166 (1009)
...++|...|+.-..-++.-..+.|.+- .|+.-|---+.|-+--||..||.||+-.. .|++-+ -..+.
T Consensus 527 l~~dkdpilR~~Gm~t~alAy~GTgnnk--------air~lLh~aVsD~nDDVrRaAVialGFVl~~dp~~~---~s~V~ 595 (929)
T KOG2062|consen 527 LLRDKDPILRYGGMYTLALAYVGTGNNK--------AIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDPEQL---PSTVS 595 (929)
T ss_pred HhcCCchhhhhhhHHHHHHHHhccCchh--------hHHHhhcccccccchHHHHHHHHHheeeEecChhhc---hHHHH
Confidence 4567889999988877777777776421 12222223378999999999999999875 233333 23334
Q ss_pred hcCCCCCHHHHHHHHhhCCCC------cccHHHHHHhh-CCCChHHHHHHHHHHhccC-----CCCCCCHHHHHHHHHHh
Q 001827 167 VLPLEQNADVRKTIVLSLPPS------NATSQAIIDCT-LDVSESVRKAAYCVLANKF-----PLQSLSIKHRTMILKRG 234 (1009)
Q Consensus 167 ~l~~D~s~eVRraaL~~i~~~------~~tl~~il~R~-rDv~~~VRr~ay~~L~~~v-----~~~~lsi~qR~~LL~~G 234 (1009)
+|.--=|+.||-.+-..+.+. +..+. +|+++ .|...-||+.|.-.++ -+ +--.-......+.+..-
T Consensus 596 lLses~N~HVRyGaA~ALGIaCAGtG~~eAi~-lLepl~~D~~~fVRQgAlIa~a-mIm~Q~t~~~~pkv~~frk~l~kv 673 (929)
T KOG2062|consen 596 LLSESYNPHVRYGAAMALGIACAGTGLKEAIN-LLEPLTSDPVDFVRQGALIALA-MIMIQQTEQLCPKVNGFRKQLEKV 673 (929)
T ss_pred HHhhhcChhhhhhHHHHHhhhhcCCCcHHHHH-HHhhhhcChHHHHHHHHHHHHH-HHHHhcccccCchHHHHHHHHHHH
Confidence 455566899999888777653 33344 45554 8999999999988766 11 10011112222223335
Q ss_pred hcCCCHHHHHHHHHHHHHHHHh
Q 001827 235 LADRSEAVSKECLKLMKDHWLA 256 (1009)
Q Consensus 235 L~Dr~~~Vr~a~~~~L~~~Wl~ 256 (1009)
.+|..+.+-......|.+..++
T Consensus 674 I~dKhEd~~aK~GAilAqGild 695 (929)
T KOG2062|consen 674 INDKHEDGMAKFGAILAQGILD 695 (929)
T ss_pred hhhhhhHHHHHHHHHHHhhhhh
Confidence 5565555555555555555554
No 138
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=35.74 E-value=1.3e+02 Score=37.08 Aligned_cols=116 Identities=19% Similarity=0.225 Sum_probs=81.2
Q ss_pred HhccCCcchhHhHHHHHHHHHhcCCCCCcCCHHHHHHHHHHHHHH-hCCCChhHHHHHHHHHhcccCCCCChHHHHHHHH
Q 001827 88 AAMAANKTARFRACQIISEIIMRLPDDTEVSDEVWDEVIECMKVK-VGDKVSVIRTFAVRSLSRFVNDSDNSDILDLLLE 166 (1009)
Q Consensus 88 ~~~akdk~VR~R~cqli~~ll~~l~~~~~idedl~~~l~~~ll~R-l~DK~~~VR~qAv~aL~rlQ~~~~d~~v~~~ll~ 166 (1009)
....+|...||.-..-++....+.|.. .+...++.= +.|-+--||..||.||+-.+-++ .+.+-.-+.
T Consensus 524 ll~d~ds~lRy~G~fs~alAy~GTgn~---------~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D--~~~lv~tve 592 (926)
T COG5116 524 LLYDKDSILRYNGVFSLALAYVGTGNL---------GVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDD--RDLLVGTVE 592 (926)
T ss_pred HhcCchHHhhhccHHHHHHHHhcCCcc---------hhHhhhheeecccCchHHHHHHHHheeeeEecC--cchhhHHHH
Confidence 357889999999998888888777732 122333333 78999999999999999886332 223333345
Q ss_pred hcCCCCCHHHHHHHHhhCCC--C---cccHHHHHHhh-CCCChHHHHHHHHHHh
Q 001827 167 VLPLEQNADVRKTIVLSLPP--S---NATSQAIIDCT-LDVSESVRKAAYCVLA 214 (1009)
Q Consensus 167 ~l~~D~s~eVRraaL~~i~~--~---~~tl~~il~R~-rDv~~~VRr~ay~~L~ 214 (1009)
+|...-++.||-.+.-.+.+ . .+.--.||+++ .|.++-||+.|--.++
T Consensus 593 lLs~shN~hVR~g~AvaLGiacag~G~~~a~diL~~L~~D~~dfVRQ~AmIa~~ 646 (926)
T COG5116 593 LLSESHNFHVRAGVAVALGIACAGTGDKVATDILEALMYDTNDFVRQSAMIAVG 646 (926)
T ss_pred HhhhccchhhhhhhHHHhhhhhcCCccHHHHHHHHHHhhCcHHHHHHHHHHHHH
Confidence 56667789999877655543 2 23344567776 7999999999987665
No 139
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=35.63 E-value=1.6e+02 Score=38.13 Aligned_cols=104 Identities=17% Similarity=0.224 Sum_probs=79.8
Q ss_pred HHHHHHHHHHHHHhccCCcchhHhHHHHHHHHHhcCCCCCcCCHHHHHHHHHHHHHHhCCCC---hhHHHHHHHHHhccc
Q 001827 76 EFLEDFLKFLLVAAMAANKTARFRACQIISEIIMRLPDDTEVSDEVWDEVIECMKVKVGDKV---SVIRTFAVRSLSRFV 152 (1009)
Q Consensus 76 ~f~~~ll~~Ll~~~~akdk~VR~R~cqli~~ll~~l~~~~~idedl~~~l~~~ll~Rl~DK~---~~VR~qAv~aL~rlQ 152 (1009)
.++..++-.|+++..-.|-.||.-+...|..++...+. -+++. .+.+...++.--.|-. -.||.-|..+|.-|-
T Consensus 905 p~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~t--L~t~~-~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~ 981 (1030)
T KOG1967|consen 905 PQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESET--LQTEH-LSTLVPYLLSLSSDNDNNMMVVREDALQCLNALT 981 (1030)
T ss_pred cchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccc--cchHH-HhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHh
Confidence 47888899999999999999999999999999888773 33443 4556666665555555 679999998887774
Q ss_pred C--CCC-----ChHHHHHHHHhcCCCCCHHHHHHHHhh
Q 001827 153 N--DSD-----NSDILDLLLEVLPLEQNADVRKTIVLS 183 (1009)
Q Consensus 153 ~--~~~-----d~~v~~~ll~~l~~D~s~eVRraaL~~ 183 (1009)
. +.. -++|++++...|. |+-.-||+.|+..
T Consensus 982 ~~~P~~~l~~fr~~Vl~al~k~Ld-DkKRlVR~eAv~t 1018 (1030)
T KOG1967|consen 982 RRLPTKSLLSFRPLVLRALIKILD-DKKRLVRKEAVDT 1018 (1030)
T ss_pred ccCCCcccccccHHHHHHhhhccC-cHHHHHHHHHHHH
Confidence 3 222 2469999999995 9999999998743
No 140
>PTZ00479 RAP Superfamily; Provisional
Probab=35.47 E-value=4.1e+02 Score=31.79 Aligned_cols=214 Identities=15% Similarity=0.125 Sum_probs=125.6
Q ss_pred hhHHHHHHHhhhhhhccccCchhhHHHHHHHHHHHhhc--chHHHHHHHHHHHHHhccCCcchhHhHHHHHHHHHhcCCC
Q 001827 36 AQFSSAFFKTLTPLFTVQRRTASAERVVRFVSAFAATN--NDEFLEDFLKFLLVAAMAANKTARFRACQIISEIIMRLPD 113 (1009)
Q Consensus 36 ~~F~~~F~~~l~~iL~~~k~~~~~dRvikFva~f~~~~--~~~f~~~ll~~Ll~~~~akdk~VR~R~cqli~~ll~~l~~ 113 (1009)
.+.+..|..++..+.+.-+ ...+.--.-.|.+.. +.+|+..++++.+..+. .-..-..-.+..-++.+.
T Consensus 78 ~~Lw~~f~~Rilel~dtL~----Pqqig~Ilyg~gKsr~~~~efy~~~~~~v~~~L~----~fssh~L~~i~wALsrL~- 148 (435)
T PTZ00479 78 LELWHGFTNRLLELSDTLT----PQQIGYIFYGYGKSRFLNPEFYEKMLKFVQPLLP----NFYSHSLMCIAWALNRVQ- 148 (435)
T ss_pred HHHHHHHHHHHHHHhccCC----HHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhh----hcCccHHHHHHHHHHhcC-
Confidence 3666667666655554322 223334444555432 77899999998887663 222223333444444454
Q ss_pred CCcC-CHHHHHHHHHHHHHHhCCCChhHHHHHHHHHhcccCCCCC--hHHHHHHHHhcCCCCCHHHHHHHHhhCCC----
Q 001827 114 DTEV-SDEVWDEVIECMKVKVGDKVSVIRTFAVRSLSRFVNDSDN--SDILDLLLEVLPLEQNADVRKTIVLSLPP---- 186 (1009)
Q Consensus 114 ~~~i-dedl~~~l~~~ll~Rl~DK~~~VR~qAv~aL~rlQ~~~~d--~~v~~~ll~~l~~D~s~eVRraaL~~i~~---- 186 (1009)
| |..+++.+.+.++.|..+=.+.-=++.+.|+++|.--+.. ..+...+..-|.+=...+.|- +++-|..
T Consensus 149 ---Ird~~fL~~~ak~vl~r~~~~r~~dl~k~~nslakLg~~~~~l~k~l~~~~~~rle~~~~~~~r~-~i~~it~~~Lf 224 (435)
T PTZ00479 149 ---IRDEAFLSRFAKEVGEKFDDIRTTDLIKICNSLAKLGGYTNNLKKFLSEKMVEKLESLFAQDFRN-VVNDVTLIHLY 224 (435)
T ss_pred ---CCcHHHHHHHHHHHHhhccccCchhHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhhhcccchhh-hcChhhHHHHh
Confidence 5 5678899999999999888888889999999999422221 234455555555556666664 3333332
Q ss_pred CcccHHHHHHhhC--CCC--hHHHHHHHH-----HHhccCCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhh
Q 001827 187 SNATSQAIIDCTL--DVS--ESVRKAAYC-----VLANKFPLQSLSIKHRTMILKRGLADRSEAVSKECLKLMKDHWLAK 257 (1009)
Q Consensus 187 ~~~tl~~il~R~r--Dv~--~~VRr~ay~-----~L~~~v~~~~lsi~qR~~LL~~GL~Dr~~~Vr~a~~~~L~~~Wl~~ 257 (1009)
+..++-++++|.. ..+ +.-=+.+|+ ++...--+..||.++|.-+.+.- .| .++ .|... .+|+..
T Consensus 225 ~d~m~~~~ler~s~~~~c~r~~hl~~~y~~aly~rl~~p~v~~~Ls~~~r~Fl~r~s--~r--~i~-~~~~~--~S~~h~ 297 (435)
T PTZ00479 225 DDNTQIYILERFSKMFICARPQHLQQAYKSAVAVRVLLPHVWFQLSKSVKSFYTRLS--MR--RIP-QSLRK--PSPFQW 297 (435)
T ss_pred hhHHHHHHHHHccccceecccHHHHHHHhhhhhheeechHHHHhcCHHHHHHHHHHh--hc--ccc-ccCCC--CcHHHH
Confidence 4667778888732 111 222223443 22211124678888888887743 22 222 23332 477764
Q ss_pred hcCCCHHHHhhhcCcc
Q 001827 258 HCNGNPIELLKYLDVE 273 (1009)
Q Consensus 258 ~~~gdi~~LL~~LDV~ 273 (1009)
|+-..|..+++.
T Consensus 298 ----dVS~~L~~mGI~ 309 (435)
T PTZ00479 298 ----DVSNCLAKLGIS 309 (435)
T ss_pred ----HHHHHHHHhCCc
Confidence 688999999985
No 141
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=35.44 E-value=7.8e+02 Score=28.76 Aligned_cols=99 Identities=21% Similarity=0.099 Sum_probs=68.4
Q ss_pred hhhhHHHHHHHHHHHHHhhccccccccCCCccHHHHHHhhhhcccCCCCHHHHHHHHHHHhhHHhcCCcchHH------H
Q 001827 486 ADFIQWMHSLAVTGLLLENAKSFHLIQGKPAESAELLHSLLLPGAKHVHLDVQRVAIRCLGLFGLLENKPSEE------L 559 (1009)
Q Consensus 486 ~d~~~~lrCL~i~~~lLe~v~~~~~l~~~~~~l~~ll~sLIlPaV~~~~~~VR~~al~CLGL~cLldk~~a~~------~ 559 (1009)
.+.+....||--+.++.|++-- .+...-.|.+.-++. .+.|.++.||+.|...+|.|.==+.. +.+ .
T Consensus 95 ~~le~ke~ald~Le~lve~iDn-----Andl~~~ggl~~ll~-~l~~~~~~lR~~Aa~Vigt~~qNNP~-~Qe~v~E~~~ 167 (342)
T KOG2160|consen 95 VDLEDKEDALDNLEELVEDIDN-----ANDLISLGGLVPLLG-YLENSDAELRELAARVIGTAVQNNPK-SQEQVIELGA 167 (342)
T ss_pred CCHHHHHHHHHHHHHHHHhhhh-----HHhHhhccCHHHHHH-HhcCCcHHHHHHHHHHHHHHHhcCHH-HHHHHHHccc
Confidence 4555667899988999888752 122233455666666 89999999999999999998644332 222 1
Q ss_pred HHHHHHHHh-hCChhHHHHHHHHHHHHHHhhCC
Q 001827 560 VKQLRLSFV-KGCPTVSIMAGKALIDLGMWHGP 591 (1009)
Q Consensus 560 ~~ll~~~~~-~~~~~vki~ALkaifDlll~hG~ 591 (1009)
+.-+...+. .++..+|..||-||.=++.-|-+
T Consensus 168 L~~Ll~~ls~~~~~~~r~kaL~AissLIRn~~~ 200 (342)
T KOG2160|consen 168 LSKLLKILSSDDPNTVRTKALFAISSLIRNNKP 200 (342)
T ss_pred HHHHHHHHccCCCchHHHHHHHHHHHHHhcCcH
Confidence 233333443 46688899999999999888743
No 142
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=35.35 E-value=3.4e+02 Score=30.72 Aligned_cols=180 Identities=16% Similarity=0.221 Sum_probs=82.9
Q ss_pred HHHHhhhhhhhHHHHHHHHHHHhhCC------ChhhHHHHHHHhhhhhhccccCchhhHHHHHHHHHHHhhc---chHHH
Q 001827 8 LDESRTSYATHNRKLKDLRAVRSKSP------STAQFSSAFFKTLTPLFTVQRRTASAERVVRFVSAFAATN---NDEFL 78 (1009)
Q Consensus 8 F~~aQ~s~~~H~k~~~~L~~l~~~~~------~~~~F~~~F~~~l~~iL~~~k~~~~~dRvikFva~f~~~~---~~~f~ 78 (1009)
+..++.-....-..++.+.+...+.. ........|+.++..+ ..++..+.-++-+++..+... ..-|.
T Consensus 20 ~~ra~~is~~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~~---~~~~d~v~yvL~li~dll~~~~~~~~~~~ 96 (312)
T PF03224_consen 20 YVRAGLISEEDLSLIKKLDKQSKEERRELLEEDGDQYASLFLNLLNKL---SSNDDTVQYVLTLIDDLLSDDPSRVELFL 96 (312)
T ss_dssp HHHTTSS-HHHHHHHHHHHHHHH-------------------HHHHHH------HHHHHHHHHHHHHHHH-SSSSHHHHH
T ss_pred HHHhCCCCHHHHHHHHHHHCCCHHHHHHHHHhchhhHHHHHHHHHHHc---cCcHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 33444333344455555554433221 1224455666666555 345556777777777766643 11122
Q ss_pred H-------HHHHHHHHHhccCCcchhHhHHHHHHHHHhcCCCCCcC-CHHHHHHHHHHHHHHhCCCChhHHHHHHHHHhc
Q 001827 79 E-------DFLKFLLVAAMAANKTARFRACQIISEIIMRLPDDTEV-SDEVWDEVIECMKVKVGDKVSVIRTFAVRSLSR 150 (1009)
Q Consensus 79 ~-------~ll~~Ll~~~~akdk~VR~R~cqli~~ll~~l~~~~~i-dedl~~~l~~~ll~Rl~DK~~~VR~qAv~aL~r 150 (1009)
. ..+..+++.....|..+..-++++++.++..-+....- ..+....+...+...+......+..-|+
T Consensus 97 ~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av----- 171 (312)
T PF03224_consen 97 ELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLLSQGPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAV----- 171 (312)
T ss_dssp HHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHHTSTTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHH-----
T ss_pred HhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHH-----
Confidence 2 13555666778889999999999999999986631110 1244455555544433333333333333
Q ss_pred ccCCCCChHHHHHHHHhcCCCCCHHHHHHHHhhCCCCcccHHHHHHhh----CCCChHHHHHHHHHHh
Q 001827 151 FVNDSDNSDILDLLLEVLPLEQNADVRKTIVLSLPPSNATSQAIIDCT----LDVSESVRKAAYCVLA 214 (1009)
Q Consensus 151 lQ~~~~d~~v~~~ll~~l~~D~s~eVRraaL~~i~~~~~tl~~il~R~----rDv~~~VRr~ay~~L~ 214 (1009)
+.|..+| .+++.|..+.. .+.++.+..-+ ...+...-...|..+.
T Consensus 172 -----------~~L~~LL---~~~~~R~~f~~-----~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll 220 (312)
T PF03224_consen 172 -----------QCLQNLL---RSKEYRQVFWK-----SNGVSPLFDILRKQATNSNSSGIQLQYQALL 220 (312)
T ss_dssp -----------HHHHHHH---TSHHHHHHHHT-----HHHHHHHHHHHH---------HHHHHHHHHH
T ss_pred -----------HHHHHHh---CcchhHHHHHh-----cCcHHHHHHHHHhhcccCCCCchhHHHHHHH
Confidence 4444444 35666666665 44455544444 2345666677777654
No 143
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=34.92 E-value=2.8e+02 Score=34.39 Aligned_cols=127 Identities=14% Similarity=0.162 Sum_probs=70.5
Q ss_pred hhhccccCchhhHHHH-HHHHHHHhhcchHHHHHHHHHHHHHhccCCcchhHhHHHHHHHHHhcCCCCCcCCHHHHHHHH
Q 001827 48 PLFTVQRRTASAERVV-RFVSAFAATNNDEFLEDFLKFLLVAAMAANKTARFRACQIISEIIMRLPDDTEVSDEVWDEVI 126 (1009)
Q Consensus 48 ~iL~~~k~~~~~dRvi-kFva~f~~~~~~~f~~~ll~~Ll~~~~akdk~VR~R~cqli~~ll~~l~~~~~idedl~~~l~ 126 (1009)
-||..-|+.+.+.|+. .||.+|...+. ++-+.-|+-++...+..|..||.-++.=|-.+-.. ..+...++.
T Consensus 27 ~il~~~kg~~k~K~Laaq~I~kffk~FP-~l~~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~-------~~~~v~kva 98 (556)
T PF05918_consen 27 EILDGVKGSPKEKRLAAQFIPKFFKHFP-DLQEEAINAQLDLCEDEDVQIRKQAIKGLPQLCKD-------NPEHVSKVA 98 (556)
T ss_dssp HHHHGGGS-HHHHHHHHHHHHHHHCC-G-GGHHHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T---------T-HHHHH
T ss_pred HHHHHccCCHHHHHHHHHHHHHHHhhCh-hhHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHh-------HHHHHhHHH
Confidence 3444555777777766 78888877542 23444566666777889999998766544443332 235677888
Q ss_pred HHHHHHhCCCChhHHHHHHHHHhccc-CCCCChHHHHHHHHhcC-C-CCCHHHHHHHHhhC
Q 001827 127 ECMKVKVGDKVSVIRTFAVRSLSRFV-NDSDNSDILDLLLEVLP-L-EQNADVRKTIVLSL 184 (1009)
Q Consensus 127 ~~ll~Rl~DK~~~VR~qAv~aL~rlQ-~~~~d~~v~~~ll~~l~-~-D~s~eVRraaL~~i 184 (1009)
+.|..-|.--++..+..+=.+|.-|- .|++ ..+..+...+. . -....||--+|.-|
T Consensus 99 DvL~QlL~tdd~~E~~~v~~sL~~ll~~d~k--~tL~~lf~~i~~~~~~de~~Re~~lkFl 157 (556)
T PF05918_consen 99 DVLVQLLQTDDPVELDAVKNSLMSLLKQDPK--GTLTGLFSQIESSKSGDEQVRERALKFL 157 (556)
T ss_dssp HHHHHHTT---HHHHHHHHHHHHHHHHH-HH--HHHHHHHHHHH---HS-HHHHHHHHHHH
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHHHhcCcH--HHHHHHHHHHHhcccCchHHHHHHHHHH
Confidence 88888888888888887777776553 1211 23333333332 1 12245787777543
No 144
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=33.10 E-value=4.9e+02 Score=35.27 Aligned_cols=177 Identities=20% Similarity=0.184 Sum_probs=104.3
Q ss_pred HHHHhhhhhhhHHHHHHHHHHHhhCCCh--hhHHHHHHHhhhhhhc--cccCchhhHHHHHHHHHHHhhcchHH---HHH
Q 001827 8 LDESRTSYATHNRKLKDLRAVRSKSPST--AQFSSAFFKTLTPLFT--VQRRTASAERVVRFVSAFAATNNDEF---LED 80 (1009)
Q Consensus 8 F~~aQ~s~~~H~k~~~~L~~l~~~~~~~--~~F~~~F~~~l~~iL~--~~k~~~~~dRvikFva~f~~~~~~~f---~~~ 80 (1009)
|.++|.-..-.|+.++..-++..+.-+. ..+.-.|.+|+...|. +.-.+.-+.++--|-+.|.. -+++ +-.
T Consensus 739 ~eea~~~~~~errgael~L~~l~~~fg~sl~~klp~l~~~L~~~L~~~~~~~d~~~~s~~vf~s~~~~--m~s~l~~~~~ 816 (1549)
T KOG0392|consen 739 LEEAQALISFERRGAELFLKILSKMFGGSLAAKLPHLWDFLLKALSGLIDGNDEFLSSFEVFNSLAPL--MHSFLHPLGS 816 (1549)
T ss_pred hhhhhhhHHHHhhhHHHHHHHHHHHhhHHHHHhcchHHHHHHHhhhccCCCCcchhhhHHHHHHHHHh--hhhhhhhhhh
Confidence 5566666555666665544444443221 2455667777777773 22222334444444333321 1222 234
Q ss_pred HHHHHHHHhccCCcchhHhHHHHHHHHHhcCCCCCcCCHHHHHHHHHHHHHHhCCCChhHHHHHHHHHhcccCCCCChHH
Q 001827 81 FLKFLLVAAMAANKTARFRACQIISEIIMRLPDDTEVSDEVWDEVIECMKVKVGDKVSVIRTFAVRSLSRFVNDSDNSDI 160 (1009)
Q Consensus 81 ll~~Ll~~~~akdk~VR~R~cqli~~ll~~l~~~~~idedl~~~l~~~ll~Rl~DK~~~VR~qAv~aL~rlQ~~~~d~~v 160 (1009)
.+..++.+..+...++|+-+.+.|..+..... -+.-....+.++.-+.|-...+|.+++..+-.+
T Consensus 817 ~l~~l~~~~~s~~~a~r~~~ar~i~~~~k~~~------~e~m~~v~~~~~~ll~~~~~~~~r~~a~e~~~~--------- 881 (1549)
T KOG0392|consen 817 LLPRLFFFVRSIHIAVRYAAARCIGTMFKSAT------RETMATVINGFLPLLGDLDKFVRRQGADELIEL--------- 881 (1549)
T ss_pred hhhHHHHhcccchHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHhhhccchhhHhhhhhHHHHHHH---------
Confidence 45567778888899999999888888776542 234445566667777777777777765543322
Q ss_pred HHHHHHhcCCCCCHHHHHHHHhhCCCCcccHHHHHHhhCCCChHHHHHHHHHHhc
Q 001827 161 LDLLLEVLPLEQNADVRKTIVLSLPPSNATSQAIIDCTLDVSESVRKAAYCVLAN 215 (1009)
Q Consensus 161 ~~~ll~~l~~D~s~eVRraaL~~i~~~~~tl~~il~R~rDv~~~VRr~ay~~L~~ 215 (1009)
+...+..+- .|.+.--++.++.|..|..+.||-++-+.++.
T Consensus 882 ---l~~~l~~~l-----------~~~~~Llv~pllr~msd~~d~vR~aat~~fa~ 922 (1549)
T KOG0392|consen 882 ---LDAVLMVGL-----------VPYNPLLVVPLLRRMSDQIDSVREAATKVFAK 922 (1549)
T ss_pred ---HHHhhcccc-----------cccceeehhhhhcccccchHHHHHHHHHHHHH
Confidence 222221111 12234556888999999999999998887664
No 145
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=31.59 E-value=40 Score=34.68 Aligned_cols=35 Identities=29% Similarity=0.517 Sum_probs=26.0
Q ss_pred ccHHHHHHhhhhcccCCCCHHHHHHHHHHHhhHHhcCC
Q 001827 516 AESAELLHSLLLPGAKHVHLDVQRVAIRCLGLFGLLEN 553 (1009)
Q Consensus 516 ~~l~~ll~sLIlPaV~~~~~~VR~~al~CLGL~cLldk 553 (1009)
|.|-+++-+++--. .++.+|..++||||++|-+|-
T Consensus 9 P~LL~~L~~iLk~e---~s~~iR~E~lr~lGilGALDP 43 (160)
T PF11865_consen 9 PELLDILLNILKTE---QSQSIRREALRVLGILGALDP 43 (160)
T ss_pred HHHHHHHHHHHHhC---CCHHHHHHHHHHhhhccccCc
Confidence 44555555554433 359999999999999999985
No 146
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=31.53 E-value=2.9e+02 Score=33.33 Aligned_cols=110 Identities=15% Similarity=0.122 Sum_probs=73.3
Q ss_pred hhHHHHHHHHHhcccC-CCCC--hHHHHHHHHhcCCCCCHHHHHHHHhhCCCCcccHHHHHHhhCCCChHHHHHHHHHHh
Q 001827 138 SVIRTFAVRSLSRFVN-DSDN--SDILDLLLEVLPLEQNADVRKTIVLSLPPSNATSQAIIDCTLDVSESVRKAAYCVLA 214 (1009)
Q Consensus 138 ~~VR~qAv~aL~rlQ~-~~~d--~~v~~~ll~~l~~D~s~eVRraaL~~i~~~~~tl~~il~R~rDv~~~VRr~ay~~L~ 214 (1009)
-+.|+.|+..|++.-. -+-+ ..+...--+++..+...|+|++++. -+..++++-.+.....|+..|..|.
T Consensus 4 l~~R~~a~~~l~~~i~~~~~~~i~~iW~~~~DLi~~~~p~e~R~~~~~-------ll~~~i~~~~~~~~~~R~~fF~~I~ 76 (464)
T PF11864_consen 4 LSERIKAAEELCESIQKYPLSSIEEIWYAAKDLIDPNQPSEARRAALE-------LLIACIKRQDSSSGLMRAEFFRDIS 76 (464)
T ss_pred HHHHHHHHHHHHHHHHhCCchHHHHHHHHHhhhcCCCCCHHHHHHHHH-------HHHHHHHccccccHHHHHHHHHHHh
Confidence 4578888888877532 2222 2456666778888888999999984 3455666666667899999999997
Q ss_pred ccCCCCCCCHHHHHHHHHHhhcCCCHHH---HHHHHHHHHHHHHhhh
Q 001827 215 NKFPLQSLSIKHRTMILKRGLADRSEAV---SKECLKLMKDHWLAKH 258 (1009)
Q Consensus 215 ~~v~~~~lsi~qR~~LL~~GL~Dr~~~V---r~a~~~~L~~~Wl~~~ 258 (1009)
..-.... ...|...|. .|.|.--.+ -......| ..|+...
T Consensus 77 ~~~~~~d--~~~~l~aL~-~LT~~Grdi~~~~~~i~~~L-~~wl~~~ 119 (464)
T PF11864_consen 77 DPSNDDD--FDLRLEALI-ALTDNGRDIDFFEYEIGPFL-LSWLEPS 119 (464)
T ss_pred cCCCchh--HHHHHHHHH-HHHcCCcCchhcccchHHHH-HHHHHHH
Confidence 4332333 367777777 777655333 33455566 5999743
No 147
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=30.98 E-value=7.8e+02 Score=31.06 Aligned_cols=179 Identities=16% Similarity=0.101 Sum_probs=109.2
Q ss_pred cCCCCHHHHHHHHHHHhhHHhc----CCcchH-HHHHHHHHHHhhCChhHHHHHHHHHHHHHHhhCCchhhhhcccCcCC
Q 001827 530 AKHVHLDVQRVAIRCLGLFGLL----ENKPSE-ELVKQLRLSFVKGCPTVSIMAGKALIDLGMWHGPQEVDKAMGQKDIS 604 (1009)
Q Consensus 530 V~~~~~~VR~~al~CLGL~cLl----dk~~a~-~~~~ll~~~~~~~~~~vki~ALkaifDlll~hG~~~ld~~~~~~~~~ 604 (1009)
-.+.+..++..|+.||-.+... +..++. +-+..+.....+++..|+.+++-+|+.++|.||...-.
T Consensus 386 ~~~kd~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~ksk--------- 456 (678)
T KOG1293|consen 386 PPIKDHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKSK--------- 456 (678)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHHH---------
Confidence 3456788899999998765532 222222 22333444446788999999999999999999963200
Q ss_pred CCCCCCCCCCCCCCCCCCCccchhHHHHHHHHhhhcccCCCCCCCCchhHHHHHHHHHHHHhhcCCCCCCCCchhhHHHH
Q 001827 605 FQPRNDKMTSSPINLSETDGDLNVELLDLLYAGIVASDRGKYSGDENESIEAVIGEGFAKVLLLSEKYPSIPASLHSLLL 684 (1009)
Q Consensus 605 s~~~~~~~~~~~~~~s~~e~~~~~~llklL~~~L~~~~~~~~~~~e~~evq~iaaEGlaKLLL~~~~~~~~~~~~~~~lL 684 (1009)
| -..+.++.+.+.+. +-++.+++.+.=-|--+|++.... ..-....++.
T Consensus 457 ---------f-----------l~~ngId~l~s~~~---------~~~~n~r~~~~~~Lr~l~f~~de~--~k~~~~~ki~ 505 (678)
T KOG1293|consen 457 ---------F-----------LRNNGIDILESMLT---------DPDFNSRANSLWVLRHLMFNCDEE--EKFQLLAKIP 505 (678)
T ss_pred ---------H-----------HHcCcHHHHHHHhc---------CCCchHHHHHHHHHHHHHhcchHH--HHHHHHHHhh
Confidence 0 01223444444443 234567777666666666644221 0011236888
Q ss_pred HHHHHHhcCCCCcchhHHHHHHHhhhcccccCCHHHHHHHHHHhHHHHHhhcccccCCCCCCccccch
Q 001827 685 AKLINLYFSNESKDLQRLKQCLSIFFEHYASLSANHKRCLSKAFVPALRSMWPGINGNAGGSSLVVSN 752 (1009)
Q Consensus 685 s~LvLlyFnP~t~~n~~LRQcLsvFFp~ya~ss~~nQ~~l~~aFlptL~~l~~~~~~na~~ss~~~s~ 752 (1009)
.++++.|-| ..+-+-.-||+.+.= .+...+++-=+.+.+.|-..+.++.+.+ .-|++++-+.+.
T Consensus 506 a~~i~~l~n--d~d~~Vqeq~fqllR-Nl~c~~~~svdfll~~~~~~ld~i~l~l-k~a~~~pi~ie~ 569 (678)
T KOG1293|consen 506 ANLILDLIN--DPDWAVQEQCFQLLR-NLTCNSRKSVDFLLEKFKDVLDKIDLQL-KIAIGSPILIEF 569 (678)
T ss_pred HHHHHHHHh--CCCHHHHHHHHHHHH-HhhcCcHHHHHHHHHhhhHHHHHHHHHH-hhccCCceehhh
Confidence 899999987 344556789998654 3444566777777788877777765544 455655544444
No 148
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=29.62 E-value=9.5e+02 Score=27.98 Aligned_cols=130 Identities=19% Similarity=0.254 Sum_probs=76.3
Q ss_pred cchHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHhhCCchhhhhcccCcCCCCCCCCCCCCCCCCCCCCCccchhHHHHH
Q 001827 554 KPSEELVKQLRLSFVKGCPTVSIMAGKALIDLGMWHGPQEVDKAMGQKDISFQPRNDKMTSSPINLSETDGDLNVELLDL 633 (1009)
Q Consensus 554 ~~a~~~~~ll~~~~~~~~~~vki~ALkaifDlll~hG~~~ld~~~~~~~~~s~~~~~~~~~~~~~~s~~e~~~~~~llkl 633 (1009)
.++.+++..++.-+..++..||+.+++.|.-|+---+...+. +....-+..|+++
T Consensus 78 hlapnlmpdLQrGLiaddasVKiLackqigcilEdcDtnaVs-------------------------eillvvNaeilkl 132 (524)
T KOG4413|consen 78 HLAPNLMPDLQRGLIADDASVKILACKQIGCILEDCDTNAVS-------------------------EILLVVNAEILKL 132 (524)
T ss_pred hhchhhhHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHH-------------------------HHHHHhhhhHHHH
Confidence 355667777777677788999999999886655322211100 0000124667888
Q ss_pred HHHhhhcccCCCCCCCCchhHHHHHHHHHHHHhhcCCCCCCCCchhhHHHHHHHHHHhcCCCCcchhHHH----------
Q 001827 634 LYAGIVASDRGKYSGDENESIEAVIGEGFAKVLLLSEKYPSIPASLHSLLLAKLINLYFSNESKDLQRLK---------- 703 (1009)
Q Consensus 634 L~~~L~~~~~~~~~~~e~~evq~iaaEGlaKLLL~~~~~~~~~~~~~~~lLs~LvLlyFnP~t~~n~~LR---------- 703 (1009)
+...+. +++.+|-.+|.|.+.++-+. |.-++. .|-..+-++..+|
T Consensus 133 ildcIg---------geddeVAkAAiesikrialf------------paalea----iFeSellDdlhlrnlaakcndia 187 (524)
T KOG4413|consen 133 ILDCIG---------GEDDEVAKAAIESIKRIALF------------PAALEA----IFESELLDDLHLRNLAAKCNDIA 187 (524)
T ss_pred HHHHHc---------CCcHHHHHHHHHHHHHHHhc------------HHHHHH----hcccccCChHHHhHHHhhhhhHH
Confidence 877764 58899999999999988652 333333 2444444555554
Q ss_pred --HHHHhhhcccccCCHHHHHHHHHHhHHHHH
Q 001827 704 --QCLSIFFEHYASLSANHKRCLSKAFVPALR 733 (1009)
Q Consensus 704 --QcLsvFFp~ya~ss~~nQ~~l~~aFlptL~ 733 (1009)
..|......|.-|....-+|=..-.+.-|.
T Consensus 188 RvRVleLIieifSiSpesaneckkSGLldlLe 219 (524)
T KOG4413|consen 188 RVRVLELIIEIFSISPESANECKKSGLLDLLE 219 (524)
T ss_pred HHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHH
Confidence 245555555555544444554444444443
No 149
>PF07462 MSP1_C: Merozoite surface protein 1 (MSP1) C-terminus; InterPro: IPR010901 This entry represents the C-terminal region of merozoite surface protein 1 (MSP1), which is found in a number of Plasmodium species. MSP-1 is a 200 kDa protein expressed on the surface of the Plasmodium vivax merozoite. MSP-1 of Plasmodium species is synthesised as a high-molecular-weight precursor and then processed into several fragments. At the time of red cell invasion by the merozoite, only the 19 kDa C-terminal fragment (MSP-119), which contains two epidermal growth factor-like domains, remains on the surface. Antibodies against MSP-119 inhibit merozoite entry into red cells, and immunisation with MSP-119 protects monkeys from challenging infections. Hence, MSP-119 is considered a promising vaccine candidate [].; GO: 0009405 pathogenesis, 0016020 membrane
Probab=29.57 E-value=83 Score=38.28 Aligned_cols=23 Identities=26% Similarity=0.541 Sum_probs=10.6
Q ss_pred ccCCCCcchhcccccccCCCcCC
Q 001827 984 TKIDEDDNEEEESSEVTSEEDSD 1006 (1009)
Q Consensus 984 ~~~~~~~~~~~~~~~~~~~~~~~ 1006 (1009)
+-..++|+|+++...+++++..+
T Consensus 337 p~fg~~ddd~ee~dQV~tGeae~ 359 (574)
T PF07462_consen 337 PLFGNNDDDDEEADQVTTGEAEN 359 (574)
T ss_pred cCCCCCcCcccccccceeccccc
Confidence 33444444444444444555444
No 150
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=29.35 E-value=5.3e+02 Score=28.11 Aligned_cols=192 Identities=15% Similarity=0.067 Sum_probs=105.1
Q ss_pred hhhcccCCCCHHHHHHHHHHHhhHHhcCCcchHH-HHHHHHHHHhhCChhHHHHHHHHHHHHHHhhCCc--hhhhhccc-
Q 001827 525 LLLPGAKHVHLDVQRVAIRCLGLFGLLENKPSEE-LVKQLRLSFVKGCPTVSIMAGKALIDLGMWHGPQ--EVDKAMGQ- 600 (1009)
Q Consensus 525 LIlPaV~~~~~~VR~~al~CLGL~cLldk~~a~~-~~~ll~~~~~~~~~~vki~ALkaifDlll~hG~~--~ld~~~~~- 600 (1009)
|+.+.-+..+|.+....+++|+-.|-.+. .... .+..+......+....+.++++.+..+...-..- .+-+....
T Consensus 5 L~~~l~~~~~~~~~~~~L~~L~~l~~~~~-~~~~~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~f~~L~~~L~~~ 83 (234)
T PF12530_consen 5 LLYKLGKISDPELQLPLLEALPSLACHKN-VCVPPVLQTLVSLVEQGSLELRYVALRLLTLLWKANDRHFPFLQPLLLLL 83 (234)
T ss_pred HHHHhcCCCChHHHHHHHHHHHHHhccCc-cchhHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence 44456666788888999999999888875 3333 3444444444455666667777777766554321 11110000
Q ss_pred -CcCCC-CC-CCC--CCCC----CCCCCCCCCccchhHHHHHHHHhhhcccCCCCCCCCchhHHHHHHHHHHHHhhcCCC
Q 001827 601 -KDISF-QP-RND--KMTS----SPINLSETDGDLNVELLDLLYAGIVASDRGKYSGDENESIEAVIGEGFAKVLLLSEK 671 (1009)
Q Consensus 601 -~~~~s-~~-~~~--~~~~----~~~~~s~~e~~~~~~llklL~~~L~~~~~~~~~~~e~~evq~iaaEGlaKLLL~~~~ 671 (1009)
...++ .. ++. +..+ +..+++...++....++..+.+.|.. ..++..++.+.||++=|+=+. +
T Consensus 84 ~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~~g~~ll~~ls~~L~~--------~~~~~~~alale~l~~Lc~~~-v 154 (234)
T PF12530_consen 84 ILRIPSSFSSKDEFWECLISIAASIRDICCSRPDHGVDLLPLLSGCLNQ--------SCDEVAQALALEALAPLCEAE-V 154 (234)
T ss_pred HhhcccccCCCcchHHHHHHHHHHHHHHHHhChhhHHHHHHHHHHHHhc--------cccHHHHHHHHHHHHHHHHHh-h
Confidence 00000 00 000 0011 11222322222456677788777721 357889999999999988432 2
Q ss_pred CCCCCchhhHHHHHHHHHHhcCCCCcchhHHHHHHHhhhcccccCCHHHHHHHHHHhHHHHHhhc
Q 001827 672 YPSIPASLHSLLLAKLINLYFSNESKDLQRLKQCLSIFFEHYASLSANHKRCLSKAFVPALRSMW 736 (1009)
Q Consensus 672 ~~~~~~~~~~~lLs~LvLlyFnP~t~~n~~LRQcLsvFFp~ya~ss~~nQ~~l~~aFlptL~~l~ 736 (1009)
.+ . .+....|. -.+ .....+.+-+.|.-||-.++.+..++ +..++...-++..+|
T Consensus 155 vd-----~-~s~w~vl~-~~l--~~~~rp~v~~~l~~l~~l~~~~~~~~-e~~~~~~~~~l~~lW 209 (234)
T PF12530_consen 155 VD-----F-YSAWKVLQ-KKL--SLDYRPLVLKSLCSLFALVPQGAVDS-EEYEELKRQILQLLW 209 (234)
T ss_pred cc-----H-HHHHHHHH-Hhc--CCccchHHHHHHHHHHHHhccccCCh-hhhhHHHHHHHHHHH
Confidence 21 0 11221111 122 66777888887777777777665555 455556666677777
No 151
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=29.08 E-value=1.3e+02 Score=30.32 Aligned_cols=64 Identities=17% Similarity=0.294 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHhCCCChhHHHHHHHHHhcccCC-CC-------ChHHHHHHHHhcCCCCCHHHHHHHHhhCC
Q 001827 122 WDEVIECMKVKVGDKVSVIRTFAVRSLSRFVND-SD-------NSDILDLLLEVLPLEQNADVRKTIVLSLP 185 (1009)
Q Consensus 122 ~~~l~~~ll~Rl~DK~~~VR~qAv~aL~rlQ~~-~~-------d~~v~~~ll~~l~~D~s~eVRraaL~~i~ 185 (1009)
-.....++.+|++.++|+|=..|+..|--+-.. .. +.+.++.|..++...+++.||..++.-|-
T Consensus 39 ~k~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~ 110 (142)
T cd03569 39 PKYAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQ 110 (142)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHH
Confidence 455688999999999999999998777666322 11 23577888888877888899988886554
No 152
>PF04931 DNA_pol_phi: DNA polymerase phi; InterPro: IPR007015 Proteins of this family are predominantly nucleolar. The majority are described as transcription factor transactivators. The family also includes the fifth essential DNA polymerase (Pol5p) of Schizosaccharomyces pombe (Fission yeast) and Saccharomyces cerevisiae (Baker's yeast) (2.7.7.7 from EC). Pol5p is localized exclusively to the nucleolus and binds near or at the enhancer region of rRNA-encoding DNA repeating units.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006351 transcription, DNA-dependent
Probab=28.39 E-value=1.4e+02 Score=38.47 Aligned_cols=37 Identities=27% Similarity=0.423 Sum_probs=33.5
Q ss_pred HHHHHHHHHHhccCCcchhHhHHHHHHHHHhcCCCCCcCC
Q 001827 79 EDFLKFLLVAAMAANKTARFRACQIISEIIMRLPDDTEVS 118 (1009)
Q Consensus 79 ~~ll~~Ll~~~~akdk~VR~R~cqli~~ll~~l~~~~~id 118 (1009)
.|.++.|.+|..|..+..|..-.-.|..+++.++ +|+
T Consensus 2 ~Y~l~RLirGl~S~r~~aR~Gfs~~Lte~l~~~~---~~~ 38 (784)
T PF04931_consen 2 QYALKRLIRGLASSRESARLGFSLALTELLSQLP---EIS 38 (784)
T ss_pred chhHHHHhcccCCChHHHHHHHHHHHHHHHHhcc---cCC
Confidence 4789999999999999999999999999999997 465
No 153
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=27.50 E-value=2.9e+02 Score=27.37 Aligned_cols=96 Identities=17% Similarity=0.173 Sum_probs=51.6
Q ss_pred hhHHHHHHHHHHHHhhchhhHHHHHhhHHHhhcccccccchhhhHHHHHHHHHHHHHhhccc-cccccCCCccHHHHHHh
Q 001827 446 KDWADAVSRLARKVHAATGEFEEIMTGAVKELALPCRERTADFIQWMHSLAVTGLLLENAKS-FHLIQGKPAESAELLHS 524 (1009)
Q Consensus 446 ~d~~~~v~el~~~l~~~~~e~ee~~~~~~~el~~~~~E~~~d~~~~lrCL~i~~~lLe~v~~-~~~l~~~~~~l~~ll~s 524 (1009)
.|| ..+.++...++.....-.+++..+.+.+.. ..+...+++|.++-.+.+|... ++..-...-.+.. +-.
T Consensus 16 ~D~-~~il~icd~I~~~~~~~k~a~raL~krl~~------~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~-l~~ 87 (133)
T cd03561 16 PDW-ALNLELCDLINLKPNGPKEAARAIRKKIKY------GNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLE-LVK 87 (133)
T ss_pred ccH-HHHHHHHHHHhCCCCCHHHHHHHHHHHHcC------CCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHH-HHH
Confidence 344 334444444444433334445445555532 3556789999999999999753 2111010012334 334
Q ss_pred hhhcccCCCCHHHHHHHHHHHhhHHh
Q 001827 525 LLLPGAKHVHLDVQRVAIRCLGLFGL 550 (1009)
Q Consensus 525 LIlPaV~~~~~~VR~~al~CLGL~cL 550 (1009)
++.+. ...++.||++.++.+.--..
T Consensus 88 l~~~~-~~~~~~Vk~kil~ll~~W~~ 112 (133)
T cd03561 88 IAKNS-PKYDPKVREKALELILAWSE 112 (133)
T ss_pred HhCCC-CCCCHHHHHHHHHHHHHHHH
Confidence 44444 45678888887776654443
No 154
>smart00543 MIF4G Middle domain of eukaryotic initiation factor 4G (eIF4G). Also occurs in NMD2p and CBP80. The domain is rich in alpha-helices and may contain multiple alpha-helical repeats. In eIF4G, this domain binds eIF4A, eIF3, RNA and DNA. Ponting (TiBS) "Novel eIF4G domain homologues (in press)
Probab=27.42 E-value=6.8e+02 Score=25.53 Aligned_cols=120 Identities=9% Similarity=0.131 Sum_probs=59.7
Q ss_pred hHHHHHHHHHhhhhhhhHHHHHHHHHHHhhCCChhhHHHHHHHhhhhhhccccCchhhHHHHHHHHHHHhhc---chHHH
Q 001827 2 QVIAKILDESRTSYATHNRKLKDLRAVRSKSPSTAQFSSAFFKTLTPLFTVQRRTASAERVVRFVSAFAATN---NDEFL 78 (1009)
Q Consensus 2 ~~I~~iF~~aQ~s~~~H~k~~~~L~~l~~~~~~~~~F~~~F~~~l~~iL~~~k~~~~~dRvikFva~f~~~~---~~~f~ 78 (1009)
+.|..++++.= .++....+..|..+.-.. +.+...+++.+...-. ..| ..+.+.|.++... ..+|.
T Consensus 2 ~~v~~~lnkLs--~~n~~~~~~~l~~~~~~~---~~~~~~l~~~i~~~~~---~~~---~~~~~ya~L~~~l~~~~~~f~ 70 (200)
T smart00543 2 KKVKGLINKLS--PSNFESIIKELLKLNNSD---KNLRKYILELIFEKAV---EEP---NFIPAYARLCALLNAKNPDFG 70 (200)
T ss_pred hHHHHHHhhCC--HHHHHHHHHHHHHHHccC---HHHHHHHHHHHHHHHH---cCc---chHHHHHHHHHHHHHHHHHHH
Confidence 35666677663 335556666776665332 2445555544432211 111 1222223322211 12344
Q ss_pred HHHHHHHHH-------HhccCCcchhHhHHHHHHHHHhcCCCCCcCCHHHHHHHHHHHHHHhCCC
Q 001827 79 EDFLKFLLV-------AAMAANKTARFRACQIISEIIMRLPDDTEVSDEVWDEVIECMKVKVGDK 136 (1009)
Q Consensus 79 ~~ll~~Ll~-------~~~akdk~VR~R~cqli~~ll~~l~~~~~idedl~~~l~~~ll~Rl~DK 136 (1009)
..+++.+.. .....++..+...+++|+.+.+.-- ++....-.+...++....+.
T Consensus 71 ~~ll~~~~~~f~~~~e~~~~~~~~~~~~~i~fl~eL~~~~~----i~~~~i~~~l~~ll~~~~~~ 131 (200)
T smart00543 71 SLLLERLQEEFEKGLESEEESDKQRRLGLVRFLGELYNFQV----LTSKIILELLKELLNDLTKL 131 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHhHHHHHHHHHHccc----CcHHHHHHHHHHHHhccCCC
Confidence 444444333 3333456667778888998888754 56554445555555555443
No 155
>KOG0917 consensus Uncharacterized conserved protein [Function unknown]
Probab=27.27 E-value=1.4e+02 Score=33.35 Aligned_cols=72 Identities=11% Similarity=0.210 Sum_probs=42.2
Q ss_pred cCCCCChhhHHHHHHHHHHHhhhcccccchhHHHHHHHHHHH---HHHhhhchHHHHH-------HHHHHHHHh-ccCCC
Q 001827 818 IHMKKTPAERSFVSALCRILVLIQFRLSEQGAIKLMRRLLNH---IFESVSTERDLVK-------ELKRMSDRL-TGLDK 886 (1009)
Q Consensus 818 ~~~~~~~~~~~y~~aL~k~l~~l~l~~s~~~~~k~l~~Ll~~---~~~~~~~Dk~~~k-------~l~k~~~~L-~~~~~ 886 (1009)
++++..|.|.+|||..+ +...++++....+..|-|..|++. +-.+ ..|+..++ -|+.|+.+| ..-|+
T Consensus 20 e~~k~dpvvayycrlya-mq~gmKid~qT~e~rk~lsgLm~~lealkkq-laDneaitne~~aqaHiE~fAlklF~~ADK 97 (338)
T KOG0917|consen 20 EHDKRDPVVAYYCRLYA-MQTGMKIDSQTPECRKFLSGLMDQLEALKKQ-LADNEAITNEIVAQAHIENFALKLFLYADK 97 (338)
T ss_pred hhcccccHHHHHHHHHH-HHhcccCCccCHHHHHHHHHHHHHHHHHHHH-hcchhhhhhchHHHHHHHHHHHHHHHhhch
Confidence 34556788998988555 777888987666665656655553 2222 23444333 356666666 44455
Q ss_pred CCCcc
Q 001827 887 HPDEE 891 (1009)
Q Consensus 887 ~~~~~ 891 (1009)
+.-.|
T Consensus 98 qdrag 102 (338)
T KOG0917|consen 98 QDRAG 102 (338)
T ss_pred hhhhc
Confidence 44444
No 156
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=26.83 E-value=1.3e+02 Score=37.13 Aligned_cols=88 Identities=17% Similarity=0.320 Sum_probs=66.6
Q ss_pred HhHHHHHHHHHhcCCCCCcCCHHHHHHHHHHHHHHhCCCCh-hHHHHHHHHHhcccCCCCChH--------HHHHHHHhc
Q 001827 98 FRACQIISEIIMRLPDDTEVSDEVWDEVIECMKVKVGDKVS-VIRTFAVRSLSRFVNDSDNSD--------ILDLLLEVL 168 (1009)
Q Consensus 98 ~R~cqli~~ll~~l~~~~~idedl~~~l~~~ll~Rl~DK~~-~VR~qAv~aL~rlQ~~~~d~~--------v~~~ll~~l 168 (1009)
-|.|+.-+.++..+.. .|+...+|-.+.+.|..-+-|-.| ++.+.++.+++..+....+.+ ++...+-.+
T Consensus 108 pr~~~~Aaql~aaIA~-~Elp~~~wp~lm~~mv~nvg~eqp~~~k~~sl~~~gy~ces~~Pe~li~~sN~il~aiv~ga~ 186 (858)
T COG5215 108 PRFCTMAAQLLAAIAR-MELPNSLWPGLMEEMVRNVGDEQPVSGKCESLGICGYHCESEAPEDLIQMSNVILFAIVMGAL 186 (858)
T ss_pred cHHHHHHHHHHHHHHH-hhCccccchHHHHHHHHhccccCchHhHHHHHHHHHHHhhccCHHHHHHHhhHHHHHHHHhhc
Confidence 4678777777776643 478889999999999999988887 567778888888874333322 334556678
Q ss_pred CCCCCHHHHHHHHhhCCC
Q 001827 169 PLEQNADVRKTIVLSLPP 186 (1009)
Q Consensus 169 ~~D~s~eVRraaL~~i~~ 186 (1009)
.+.+++-||.++|.++.-
T Consensus 187 k~et~~avRLaaL~aL~d 204 (858)
T COG5215 187 KNETTSAVRLAALKALMD 204 (858)
T ss_pred ccCchHHHHHHHHHHHHH
Confidence 899999999999987754
No 157
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=26.46 E-value=1.8e+02 Score=28.84 Aligned_cols=63 Identities=14% Similarity=0.200 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHhCCCChhHHHHHHHHHhcccCCCC--------ChHHHHHHHHhcCC--CCCHHHHHHHHhhC
Q 001827 122 WDEVIECMKVKVGDKVSVIRTFAVRSLSRFVNDSD--------NSDILDLLLEVLPL--EQNADVRKTIVLSL 184 (1009)
Q Consensus 122 ~~~l~~~ll~Rl~DK~~~VR~qAv~aL~rlQ~~~~--------d~~v~~~ll~~l~~--D~s~eVRraaL~~i 184 (1009)
-.....++.+|++.+.|+|...|+..|--+-.... +.+.+..|+.++.. -++++||.-++.-|
T Consensus 35 ~k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll 107 (133)
T cd03561 35 PKEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELI 107 (133)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHH
Confidence 45567889999999999999999988877642211 12455567777754 46778888777544
No 158
>smart00543 MIF4G Middle domain of eukaryotic initiation factor 4G (eIF4G). Also occurs in NMD2p and CBP80. The domain is rich in alpha-helices and may contain multiple alpha-helical repeats. In eIF4G, this domain binds eIF4A, eIF3, RNA and DNA. Ponting (TiBS) "Novel eIF4G domain homologues (in press)
Probab=26.26 E-value=7.1e+02 Score=25.38 Aligned_cols=85 Identities=18% Similarity=0.162 Sum_probs=48.6
Q ss_pred hHHHHHHHHHHHhhc--chHHHHHHHHHHHHHhccCCcchhHhHHHHHHHHHhcCCCCC--cCCHHHHHHHHHHHHHHhC
Q 001827 59 AERVVRFVSAFAATN--NDEFLEDFLKFLLVAAMAANKTARFRACQIISEIIMRLPDDT--EVSDEVWDEVIECMKVKVG 134 (1009)
Q Consensus 59 ~dRvikFva~f~~~~--~~~f~~~ll~~Ll~~~~akdk~VR~R~cqli~~ll~~l~~~~--~idedl~~~l~~~ll~Rl~ 134 (1009)
.-..++|++...... ....+-.+++.|+......+..-....+.++..++...|... .-+.+..+.+...+.....
T Consensus 96 ~~~~i~fl~eL~~~~~i~~~~i~~~l~~ll~~~~~~~~~~~~~~ve~l~~lL~~~G~~l~~~~~~~~~~~~l~~l~~~~~ 175 (200)
T smart00543 96 RLGLVRFLGELYNFQVLTSKIILELLKELLNDLTKLDPPRSDFSVECLLSLLPTCGKDLEREKSPKLLDEILERLQDYLL 175 (200)
T ss_pred HHhHHHHHHHHHHcccCcHHHHHHHHHHHHhccCCCCCCCcHHHHHHHHHHHHHhhHHHcCcccHHHHHHHHHHHHHHHh
Confidence 455677777776643 455677777777776544332223445566666666666421 1234456666666666666
Q ss_pred CC---ChhHHHH
Q 001827 135 DK---VSVIRTF 143 (1009)
Q Consensus 135 DK---~~~VR~q 143 (1009)
++ .+..|.+
T Consensus 176 ~~~~~~~~~r~~ 187 (200)
T smart00543 176 KKDKTELSSRLR 187 (200)
T ss_pred cccccCCChHHH
Confidence 65 4555544
No 159
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=25.97 E-value=4.5e+02 Score=30.29 Aligned_cols=111 Identities=17% Similarity=0.262 Sum_probs=88.3
Q ss_pred HHHHHHHHHHHhccCCcchhHhHHHHHHHHHhcCCCCCcCCHHHHHHHHHHHHHHhCCCChhHHHHHHHHHhcccCCCCC
Q 001827 78 LEDFLKFLLVAAMAANKTARFRACQIISEIIMRLPDDTEVSDEVWDEVIECMKVKVGDKVSVIRTFAVRSLSRFVNDSDN 157 (1009)
Q Consensus 78 ~~~ll~~Ll~~~~akdk~VR~R~cqli~~ll~~l~~~~~idedl~~~l~~~ll~Rl~DK~~~VR~qAv~aL~rlQ~~~~d 157 (1009)
+..++=++.+..+.....|=-=+|+.++.|+..+++ .|++ ..+.+...|+.|--+-..-||.-|-.||-.+-+.-..
T Consensus 127 L~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~--~i~~-~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp 203 (334)
T KOG2933|consen 127 LHEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNN--SIDQ-ELDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTP 203 (334)
T ss_pred HHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHH--HHHH-HHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccCh
Confidence 444555677777777777777789999999999985 5666 5677777888888777789999999999999876677
Q ss_pred hHHHHHHHHhcCCCCCHHHHHHHHhhCCCCcccHH
Q 001827 158 SDILDLLLEVLPLEQNADVRKTIVLSLPPSNATSQ 192 (1009)
Q Consensus 158 ~~v~~~ll~~l~~D~s~eVRraaL~~i~~~~~tl~ 192 (1009)
..++..|+-.+++ .++-||+.+-.|.+-...++.
T Consensus 204 ~~~L~~L~~~~~~-~n~r~r~~a~~~~~~~v~rl~ 237 (334)
T KOG2933|consen 204 QKLLRKLIPILQH-SNPRVRAKAALCFSRCVIRLG 237 (334)
T ss_pred HHHHHHHHHHHhh-hchhhhhhhhccccccceecc
Confidence 7788999988875 899999999988876655553
No 160
>KOG2181 consensus LIM domain binding protein LDB1/NLI/CLIM [Transcription]
Probab=25.79 E-value=1.7e+02 Score=33.09 Aligned_cols=34 Identities=29% Similarity=0.502 Sum_probs=25.0
Q ss_pred HHHHhhhcccccccccCccccCCCCCCCCCCcchhhhcccCC
Q 001827 897 ANLIFGRLELDFSLDAQVPVLQTPAPCSTRPTRSRRKAKRDE 938 (1009)
Q Consensus 897 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 938 (1009)
+.++|.+-+. -|+|+|.|..+||+|.|||...+.
T Consensus 255 KttLFQkwQr--------MvaPp~ep~~qkp~~KRrkrk~a~ 288 (415)
T KOG2181|consen 255 KTTLFQKWQR--------MVAPPPEPEKQKPARKRRKRKAAA 288 (415)
T ss_pred HHHHHHHhhh--------hhcCCCCCCCCCCchhhhhccccc
Confidence 4558888754 577888899999988777766543
No 161
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=25.02 E-value=1.5e+03 Score=29.33 Aligned_cols=160 Identities=14% Similarity=0.101 Sum_probs=99.1
Q ss_pred HHHHHhccCCcchhHhHHHHHHHHHhcCCCCCcCCHHHHHHHHHHHHHHhCCCChhHHHHHHHHHhcccCCCCCh-----
Q 001827 84 FLLVAAMAANKTARFRACQIISEIIMRLPDDTEVSDEVWDEVIECMKVKVGDKVSVIRTFAVRSLSRFVNDSDNS----- 158 (1009)
Q Consensus 84 ~Ll~~~~akdk~VR~R~cqli~~ll~~l~~~~~idedl~~~l~~~ll~Rl~DK~~~VR~qAv~aL~rlQ~~~~d~----- 158 (1009)
..-+.-.-....||-=+++-+..+-..++. +...+.+...+..-..|-.-+||.-|+.++..+-+--+++
T Consensus 241 ~~~~lc~d~~~~Vr~~~a~~l~~~a~~~~~-----~~~~s~v~~~~~~L~~DdqdsVr~~a~~~~~~l~~l~~~~~d~~~ 315 (759)
T KOG0211|consen 241 IVQSLCQDDTPMVRRAVASNLGNIAKVLES-----EIVKSEVLPTLIQLLRDDQDSVREAAVESLVSLLDLLDDDDDVVK 315 (759)
T ss_pred HHHhhccccchhhHHHHHhhhHHHHHHHHH-----HHHHhhccHHHhhhhhcchhhHHHHHHHHHHHHHHhcCCchhhhh
Confidence 333444555556666666666666665553 3334444555555578888899999999888874322211
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHhhC-------CCC--c-ccHHHHHHhhCCCChHHHHHHHHHHhc---cCC---CCCC
Q 001827 159 DILDLLLEVLPLEQNADVRKTIVLSL-------PPS--N-ATSQAIIDCTLDVSESVRKAAYCVLAN---KFP---LQSL 222 (1009)
Q Consensus 159 ~v~~~ll~~l~~D~s~eVRraaL~~i-------~~~--~-~tl~~il~R~rDv~~~VRr~ay~~L~~---~v~---~~~l 222 (1009)
...+.++... .|+++.||..+.... .+. . .-.+....-.+|....+|.++-.+..+ -.+ ..++
T Consensus 316 ~~~~~l~~~~-~d~~~~v~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~~~~~~~i 394 (759)
T KOG0211|consen 316 SLTESLVQAV-EDGSWRVSYMVADKFSELSSAVGPSATRTQLVPPVSNLLKDEEWEVRYAIAKKVQKLACYLNASCYPNI 394 (759)
T ss_pred hhhHHHHHHh-cChhHHHHHHHhhhhhhHHHHhccccCcccchhhHHHHhcchhhhhhHHhhcchHHHhhhcCccccccc
Confidence 3455666555 699999999887442 111 1 225666777799999999998886543 111 2334
Q ss_pred CHHHHHHHHHHhhcCCCHHHHHHHHHH
Q 001827 223 SIKHRTMILKRGLADRSEAVSKECLKL 249 (1009)
Q Consensus 223 si~qR~~LL~~GL~Dr~~~Vr~a~~~~ 249 (1009)
....-.-.++.-..|..+.||.+-.-.
T Consensus 395 ~~~~ilp~~~~lv~d~~~~vr~a~a~~ 421 (759)
T KOG0211|consen 395 PDSSILPEVQVLVLDNALHVRSALASV 421 (759)
T ss_pred chhhhhHHHHHHHhcccchHHHHHhcc
Confidence 444445667777788888888665433
No 162
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=25.00 E-value=63 Score=42.45 Aligned_cols=56 Identities=25% Similarity=0.537 Sum_probs=0.0
Q ss_pred CccccCCCCCCCCCCcchhhh-----------------------cccCCCCCCCCCCCCCCCccCCCCCCcccchhhhhh
Q 001827 913 QVPVLQTPAPCSTRPTRSRRK-----------------------AKRDETSSDEEDSPTSAQYVVPSNPGSISTRSERAS 969 (1009)
Q Consensus 913 ~~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 969 (1009)
+..+---....+..||+|||| +..+++++||+-.
T Consensus 1686 sl~iR~ddeaqd~iptprrrrllsgnttndtnaDnEEregq~~ef~GEed~~Dddnd----------------------- 1742 (3015)
T KOG0943|consen 1686 SLPIRGDDEAQDDIPTPRRRRLLSGNTTNDTNADNEEREGQEGEFAGEEDHHDDDND----------------------- 1742 (3015)
T ss_pred cccccCCccccccCCCchhhhhccCCccCccccchhhhcCCcccccCcccccccccc-----------------------
Q ss_pred HHHHHhhhhccCCcccCCCCcchhcccccccCCCcCCCCC
Q 001827 970 KTAALTKMTASIIPTKIDEDDNEEEESSEVTSEEDSDESD 1009 (1009)
Q Consensus 970 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1009 (1009)
|++|++.|++.+. +++|.|++|
T Consensus 1743 -----------------dddddd~EaEddd-DddDdDdeD 1764 (3015)
T KOG0943|consen 1743 -----------------DDDDDDAEAEDDD-DDDDDDDED 1764 (3015)
T ss_pred -----------------cccccchhhcccc-ccccccccc
No 163
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=24.68 E-value=4.1e+02 Score=27.32 Aligned_cols=90 Identities=18% Similarity=0.123 Sum_probs=70.7
Q ss_pred CHHHHHHHHHHHHHHhCCCChhHHHHHHHHHhcccCCC-CC------hHHHHHHHHhcCCCCCHHHHHHHHhhCCCCccc
Q 001827 118 SDEVWDEVIECMKVKVGDKVSVIRTFAVRSLSRFVNDS-DN------SDILDLLLEVLPLEQNADVRKTIVLSLPPSNAT 190 (1009)
Q Consensus 118 dedl~~~l~~~ll~Rl~DK~~~VR~qAv~aL~rlQ~~~-~d------~~v~~~ll~~l~~D~s~eVRraaL~~i~~~~~t 190 (1009)
.....+++...+...+++|.+.-|-.++.-+.-..... -+ ...++.++.+|+....+.++.+++ .|
T Consensus 19 ~~~~l~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai-------~~ 91 (165)
T PF08167_consen 19 SKSALHKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAI-------IT 91 (165)
T ss_pred CHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH-------HH
Confidence 55677888888899999999999999888887775332 11 236788999999888888888877 46
Q ss_pred HHHHHHhhCCCChHHHHHHHHHHh
Q 001827 191 SQAIIDCTLDVSESVRKAAYCVLA 214 (1009)
Q Consensus 191 l~~il~R~rDv~~~VRr~ay~~L~ 214 (1009)
+..|+.++++..+-+|+.+--.|.
T Consensus 92 L~~l~~~~~~~p~l~Rei~tp~l~ 115 (165)
T PF08167_consen 92 LTRLFDLIRGKPTLTREIATPNLP 115 (165)
T ss_pred HHHHHHHhcCCCchHHHHhhccHH
Confidence 778999999998888888765554
No 164
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=24.28 E-value=2.1e+02 Score=34.61 Aligned_cols=71 Identities=6% Similarity=0.162 Sum_probs=58.0
Q ss_pred HHHHhhhhhhccccCchhhHHHHHHHHHHHhhc-----chHHHHHHHHHHHHHhccCCcchhHhHHHHHHHHHhcC
Q 001827 41 AFFKTLTPLFTVQRRTASAERVVRFVSAFAATN-----NDEFLEDFLKFLLVAAMAANKTARFRACQIISEIIMRL 111 (1009)
Q Consensus 41 ~F~~~l~~iL~~~k~~~~~dRvikFva~f~~~~-----~~~f~~~ll~~Ll~~~~akdk~VR~R~cqli~~ll~~l 111 (1009)
+..+|+..+|.-.-..+.+..++|-++..+... .-.|+..+++++-+.+.++|.+||.-+.-++..|++.-
T Consensus 106 ~~~r~l~~~l~~e~~~~~~tq~~kcla~lv~~~p~~~l~~~~~~~~~~~ik~~i~~~d~~v~vs~l~~~~~~v~t~ 181 (728)
T KOG4535|consen 106 ELHRCLLLALVAESSSQTVTQIIKCLANLVSNAPYDRLKLSLLTKVWNQIKPYIRHKDVNVRVSSLTLLGAIVSTH 181 (728)
T ss_pred HHHHHHHHHHHHhcCchhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHhcC
Confidence 344556666655556688999999999999753 44699999999999999999999999999998888764
No 165
>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms]
Probab=24.20 E-value=1.2e+03 Score=27.80 Aligned_cols=67 Identities=15% Similarity=0.011 Sum_probs=48.0
Q ss_pred ccCCCCHHHHHHHHHHHhhHHhcCCc--chHHH---------HHHHHHHHhhCChhHHHHHHHHHHHHHHhhCCchhhh
Q 001827 529 GAKHVHLDVQRVAIRCLGLFGLLENK--PSEEL---------VKQLRLSFVKGCPTVSIMAGKALIDLGMWHGPQEVDK 596 (1009)
Q Consensus 529 aV~~~~~~VR~~al~CLGL~cLldk~--~a~~~---------~~ll~~~~~~~~~~vki~ALkaifDlll~hG~~~ld~ 596 (1009)
.+.-.+..||..|++-|-++|-=|.- .+... -.+|.+.- .+++.++..+++.|.|=+..-|.+++.+
T Consensus 69 ~~ed~d~~ir~qaik~lp~fc~~d~~~rv~d~l~qLLnk~sl~~Lf~~~~-~~D~~irek~l~fi~tKl~~l~~e~L~k 146 (460)
T KOG2213|consen 69 LCEDDDVGIRRQAIKGLPLFCKGDALSRVNDVLVQLLNKASLTGLFGQIE-VGDEQIREKVLKFIRTKLITLKGEVLTK 146 (460)
T ss_pred cccccchhhHHHHHhccchhccCchhhhhHHHHHHHHHHHHHHHHHhhhh-hhhHHHHHHHHHHHHHHhhcccHHHhhh
Confidence 35567899999999999999976541 11111 22333333 3689999999999999998888877664
No 166
>smart00229 RasGEFN Guanine nucleotide exchange factor for Ras-like GTPases; N-terminal motif. A subset of guanine nucleotide exchange factor for Ras-like small GTPases appear to possess this domain N-terminal to the RasGef (Cdc25-like) domain. The recent crystal structureof Sos shows that this domain is alpha-helical and plays a "purely structural role" (Nature 394, 337-343).
Probab=24.17 E-value=4e+02 Score=25.61 Aligned_cols=56 Identities=16% Similarity=0.111 Sum_probs=40.0
Q ss_pred chhHhHHHHHHHHHhcCCCCCcCCHHHHHHHHHHHHHHhCCCChhHHHHHHHHHhc
Q 001827 95 TARFRACQIISEIIMRLPDDTEVSDEVWDEVIECMKVKVGDKVSVIRTFAVRSLSR 150 (1009)
Q Consensus 95 ~VR~R~cqli~~ll~~l~~~~~idedl~~~l~~~ll~Rl~DK~~~VR~qAv~aL~r 150 (1009)
.+|.|+++++..-+...+.+-.=+.++...+.+-+-.-..++.+..+..++..+.+
T Consensus 70 ~~~~rv~~~l~~Wv~~~~~dF~~~~~l~~~l~~f~~~~~~~~~~~~~~~l~~~~~~ 125 (127)
T smart00229 70 RVKNRVLNILRHWVENYWQDFEDDPKLILRLLEFLDLVDQEKGPGLVTSLQELLQR 125 (127)
T ss_pred HHHHHHHHHHHHHHHHCCcccccCHHHHHHHHHHHHHHhhCcCCCHHHHHHHHHHh
Confidence 48999999999999998864333444788887766555566677777766655544
No 167
>PF01851 PC_rep: Proteasome/cyclosome repeat; InterPro: IPR002015 A weakly conserved repeat module of unknown function, which occurs in two regulatory subunits of the 26S-proteasome and in one subunit of the APC-complex (cyclosome) [].; PDB: 4ADY_A.
Probab=24.05 E-value=1.2e+02 Score=23.14 Aligned_cols=34 Identities=26% Similarity=0.386 Sum_probs=24.1
Q ss_pred HHHHHhcccCCCCChHHHHHHHHhcCCCCCHHHHH
Q 001827 144 AVRSLSRFVNDSDNSDILDLLLEVLPLEQNADVRK 178 (1009)
Q Consensus 144 Av~aL~rlQ~~~~d~~v~~~ll~~l~~D~s~eVRr 178 (1009)
|+.+|+-..-...+.++++.|...+ +|++.++|+
T Consensus 2 A~lgLGl~~aGs~~~~~~~~L~~~l-~~~~~~~~~ 35 (35)
T PF01851_consen 2 AILGLGLIYAGSGNEEVLDLLRPYL-SDTSNEMIQ 35 (35)
T ss_dssp HHHHHHHHTTTT--HHHHHHHHHHH-CTSSHHHHH
T ss_pred cHHHHHHHHcCCCCHHHHHHHHHHH-HhccccccC
Confidence 5667776655556677999998888 588888874
No 168
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=23.86 E-value=5.1e+02 Score=33.90 Aligned_cols=91 Identities=21% Similarity=0.273 Sum_probs=66.7
Q ss_pred hHHHHHHHHHHHhhcchHHHHHHHHHHHHHhccCC---cchhHhHHHHHHHHHhcCCCCCcCCHHHHHHHHHHHHHHhCC
Q 001827 59 AERVVRFVSAFAATNNDEFLEDFLKFLLVAAMAAN---KTARFRACQIISEIIMRLPDDTEVSDEVWDEVIECMKVKVGD 135 (1009)
Q Consensus 59 ~dRvikFva~f~~~~~~~f~~~ll~~Ll~~~~akd---k~VR~R~cqli~~ll~~l~~~~~idedl~~~l~~~ll~Rl~D 135 (1009)
..|+++-...-.....+.-+..++..++....+.| ..||.=+.|.++.+...+|...-.. --+.+..++.+=|-|
T Consensus 929 tl~~i~~~l~~~~tL~t~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~--fr~~Vl~al~k~LdD 1006 (1030)
T KOG1967|consen 929 TLRTIPMLLTESETLQTEHLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLS--FRPLVLRALIKILDD 1006 (1030)
T ss_pred HhhhhhHHHHhccccchHHHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCccccc--ccHHHHHHhhhccCc
Confidence 44555444433333345677888888888777777 6799999999999999888643332 124567777888999
Q ss_pred CChhHHHHHHHHHhcc
Q 001827 136 KVSVIRTFAVRSLSRF 151 (1009)
Q Consensus 136 K~~~VR~qAv~aL~rl 151 (1009)
|.-.||.+||.+=..+
T Consensus 1007 kKRlVR~eAv~tR~~W 1022 (1030)
T KOG1967|consen 1007 KKRLVRKEAVDTRQNW 1022 (1030)
T ss_pred HHHHHHHHHHHHhhhh
Confidence 9999999999886555
No 169
>KOG2149 consensus Uncharacterized conserved protein [Function unknown]
Probab=23.50 E-value=1.9e+02 Score=34.09 Aligned_cols=114 Identities=22% Similarity=0.219 Sum_probs=77.6
Q ss_pred CChhHHHHHHHHHhcccCCCCChHHHHHHHHhcCCCCCHHHHHHHHhhCCC------C------cccHHHHHHhhCCCCh
Q 001827 136 KVSVIRTFAVRSLSRFVNDSDNSDILDLLLEVLPLEQNADVRKTIVLSLPP------S------NATSQAIIDCTLDVSE 203 (1009)
Q Consensus 136 K~~~VR~qAv~aL~rlQ~~~~d~~v~~~ll~~l~~D~s~eVRraaL~~i~~------~------~~tl~~il~R~rDv~~ 203 (1009)
|--..|.|++.+..-.-......-....|+-.|. -.|+.||+.++.+|-- . ...++.+.++..|-+.
T Consensus 35 kaiil~eQ~~~~e~~~~~t~~k~ltlkeLl~qlk-HhNakvRkdal~glkd~l~s~p~~l~~~~~~ll~~~~~~i~D~~~ 113 (393)
T KOG2149|consen 35 KAIILPEQSVLAEDSGLATSKKGLTLKELLSQLK-HHNAKVRKDALNGLKDLLKSHPAELQSHLYALLQKLRELILDDDS 113 (393)
T ss_pred hhhccHHHHHHHhccCCccccccccHHHHHhhhc-CchHhhhHHHHHHHHHHHHhChHHHHHHHHHHHHHhhhhhcCccc
Confidence 4446777877776655333334446778888886 4999999999987631 1 2457888899999999
Q ss_pred HHHHHHHHHHhccCC----CC-CCCHHHHHHHHHHhhcCCCHHHHHHHHHHH
Q 001827 204 SVRKAAYCVLANKFP----LQ-SLSIKHRTMILKRGLADRSEAVSKECLKLM 250 (1009)
Q Consensus 204 ~VRr~ay~~L~~~v~----~~-~lsi~qR~~LL~~GL~Dr~~~Vr~a~~~~L 250 (1009)
.||...|+-+-..+. .. +.=+.--+.-+..++.--.+.||.-..++|
T Consensus 114 ~vR~~~~qll~~~i~~~~~e~~sp~~~l~~~yi~~AMThit~~i~~dslkfL 165 (393)
T KOG2149|consen 114 LVRDALYQLLDSLILPACKEDQSPMVSLLMPYISSAMTHITPEIQEDSLKFL 165 (393)
T ss_pred cHHHHHHHHHHHHHhhcchhhhcchHHHHHHHHHHHHhhccHHHHHhhHHHH
Confidence 999999997654221 11 122233345566777777888887777776
No 170
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=23.23 E-value=3.2e+02 Score=30.75 Aligned_cols=86 Identities=14% Similarity=0.184 Sum_probs=63.6
Q ss_pred HHHHHHHhCCCChhHHHHHHHHHhcccCCCCChHHHHHHHHhcCCCCCHHHHHHHHhhCCC--CcccHHHHHHhhCCCCh
Q 001827 126 IECMKVKVGDKVSVIRTFAVRSLSRFVNDSDNSDILDLLLEVLPLEQNADVRKTIVLSLPP--SNATSQAIIDCTLDVSE 203 (1009)
Q Consensus 126 ~~~ll~Rl~DK~~~VR~qAv~aL~rlQ~~~~d~~v~~~ll~~l~~D~s~eVRraaL~~i~~--~~~tl~~il~R~rDv~~ 203 (1009)
+.++.+-+.|-.+..|..++..++.+|.+..=....+.|. ..-.++.||-.+...+.- ++..++.+-+-+.|-++
T Consensus 189 I~al~~~l~~~SalfrhEvAfVfGQl~s~~ai~~L~k~L~---d~~E~pMVRhEaAeALGaIa~e~~~~vL~e~~~D~~~ 265 (289)
T KOG0567|consen 189 INALIDGLADDSALFRHEVAFVFGQLQSPAAIPSLIKVLL---DETEHPMVRHEAAEALGAIADEDCVEVLKEYLGDEER 265 (289)
T ss_pred HHHHHHhcccchHHHHHHHHHHHhhccchhhhHHHHHHHH---hhhcchHHHHHHHHHHHhhcCHHHHHHHHHHcCCcHH
Confidence 4556666888899999999999999985422222333333 334689999998888752 57788998888999999
Q ss_pred HHHHHHHHHHh
Q 001827 204 SVRKAAYCVLA 214 (1009)
Q Consensus 204 ~VRr~ay~~L~ 214 (1009)
.||..+-..|.
T Consensus 266 vv~esc~vald 276 (289)
T KOG0567|consen 266 VVRESCEVALD 276 (289)
T ss_pred HHHHHHHHHHH
Confidence 99988766553
No 171
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=23.06 E-value=1.1e+03 Score=26.29 Aligned_cols=98 Identities=15% Similarity=0.190 Sum_probs=58.2
Q ss_pred ChhHHHHHHHHHhcccCCCCChHHHHHHHHhcCCCCCHHHHHHHHhhCCCCcccHHHHHHhhCCCChHHHHHHHHHHhcc
Q 001827 137 VSVIRTFAVRSLSRFVNDSDNSDILDLLLEVLPLEQNADVRKTIVLSLPPSNATSQAIIDCTLDVSESVRKAAYCVLANK 216 (1009)
Q Consensus 137 ~~~VR~qAv~aL~rlQ~~~~d~~v~~~ll~~l~~D~s~eVRraaL~~i~~~~~tl~~il~R~rDv~~~VRr~ay~~L~~~ 216 (1009)
.|..|-.+.....+.- +.+..+.+......+++++.|..++..+.-++. +...+.++..+...
T Consensus 168 ~~dlr~~v~~~~~~~g----~~~~~~~l~~~~~~~~~~~~k~~~l~aLa~~~d-------------~~~~~~~l~~~l~~ 230 (324)
T PF11838_consen 168 PPDLRWAVYCAGVRNG----DEEEWDFLWELYKNSTSPEEKRRLLSALACSPD-------------PELLKRLLDLLLSN 230 (324)
T ss_dssp -HHHHHHHHHHHTTS------HHHHHHHHHHHHTTSTHHHHHHHHHHHTT-S--------------HHHHHHHHHHHHCT
T ss_pred chHHHHHHHHHHHHHh----hHhhHHHHHHHHhccCCHHHHHHHHHhhhccCC-------------HHHHHHHHHHHcCC
Confidence 4566766666665551 234577888888889999999999998875532 33333344443321
Q ss_pred CCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHH
Q 001827 217 FPLQSLSIKHRTMILKRGLADRSEAVSKECLKLMKDHWL 255 (1009)
Q Consensus 217 v~~~~lsi~qR~~LL~~GL~Dr~~~Vr~a~~~~L~~~Wl 255 (1009)
..++......++. |+..+.+..|..+-+.+..+|=
T Consensus 231 ---~~v~~~d~~~~~~-~~~~~~~~~~~~~~~~~~~n~~ 265 (324)
T PF11838_consen 231 ---DKVRSQDIRYVLA-GLASSNPVGRDLAWEFFKENWD 265 (324)
T ss_dssp ---STS-TTTHHHHHH-HHH-CSTTCHHHHHHHHHHCHH
T ss_pred ---cccccHHHHHHHH-HHhcCChhhHHHHHHHHHHHHH
Confidence 1133344455555 8877777777777666665554
No 172
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=22.86 E-value=2.2e+02 Score=28.47 Aligned_cols=96 Identities=16% Similarity=0.196 Sum_probs=49.8
Q ss_pred hhHHHHHHHHHHHHhhchhhHHHHHhhHHHhhcccccccchhhhHHHHHHHHHHHHHhhccc-cccccCCCccHHHHHHh
Q 001827 446 KDWADAVSRLARKVHAATGEFEEIMTGAVKELALPCRERTADFIQWMHSLAVTGLLLENAKS-FHLIQGKPAESAELLHS 524 (1009)
Q Consensus 446 ~d~~~~v~el~~~l~~~~~e~ee~~~~~~~el~~~~~E~~~d~~~~lrCL~i~~~lLe~v~~-~~~l~~~~~~l~~ll~s 524 (1009)
.|| ..++++...++.....-.+++..+.+.+.. ..+...++||+++-.+.+|... ++..-. +.....-+..
T Consensus 21 ~Dw-~~~l~icD~i~~~~~~~kea~~~l~krl~~------~~~~vq~~aL~lld~lvkNcg~~f~~ev~-~~~fl~~l~~ 92 (140)
T PF00790_consen 21 PDW-SLILEICDLINSSPDGAKEAARALRKRLKH------GNPNVQLLALTLLDALVKNCGPRFHREVA-SKEFLDELVK 92 (140)
T ss_dssp --H-HHHHHHHHHHHTSTTHHHHHHHHHHHHHTT------SSHHHHHHHHHHHHHHHHHSHHHHHHHHT-SHHHHHHHHH
T ss_pred CCH-HHHHHHHHHHHcCCccHHHHHHHHHHHHhC------CCHHHHHHHHHHHHHHHHcCCHHHHHHHh-HHHHHHHHHH
Confidence 356 445556656665544445555555555532 4566789999999999999742 211001 0112223333
Q ss_pred hhhcccCCCCHHHHHHHHHHHhhHH
Q 001827 525 LLLPGAKHVHLDVQRVAIRCLGLFG 549 (1009)
Q Consensus 525 LIlPaV~~~~~~VR~~al~CLGL~c 549 (1009)
++.+.-....+.||++.+..+.--.
T Consensus 93 l~~~~~~~~~~~Vk~k~l~ll~~W~ 117 (140)
T PF00790_consen 93 LIKSKKTDPETPVKEKILELLQEWA 117 (140)
T ss_dssp HHHHTTTHHHSHHHHHHHHHHHHHH
T ss_pred HHccCCCCchhHHHHHHHHHHHHHH
Confidence 4343333222227777776655443
No 173
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=22.56 E-value=1.7e+03 Score=28.61 Aligned_cols=111 Identities=19% Similarity=0.287 Sum_probs=71.5
Q ss_pred HHHHHHHHHHHHHhCCCChhHHHHHHHHHhcccCCCC------ChHHHHHHHHhcCCCCCHHHHH---HHHhhCCCC---
Q 001827 120 EVWDEVIECMKVKVGDKVSVIRTFAVRSLSRFVNDSD------NSDILDLLLEVLPLEQNADVRK---TIVLSLPPS--- 187 (1009)
Q Consensus 120 dl~~~l~~~ll~Rl~DK~~~VR~qAv~aL~rlQ~~~~------d~~v~~~ll~~l~~D~s~eVRr---aaL~~i~~~--- 187 (1009)
.-|++-.+.+...++..+..+| -|...|..+..++. +.+++..|+.+|..+ +.++.. ..|++|.+.
T Consensus 246 ~~~~~~~kk~~~l~~kQeqLlr-v~~~lLlNLAed~~ve~kM~~~~iV~~Lv~~Ldr~-n~ellil~v~fLkkLSi~~EN 323 (708)
T PF05804_consen 246 KDYEKELKKLQTLIRKQEQLLR-VAFYLLLNLAEDPRVELKMVNKGIVSLLVKCLDRE-NEELLILAVTFLKKLSIFKEN 323 (708)
T ss_pred hhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhcChHHHHHHHhcCCHHHHHHHHcCC-CHHHHHHHHHHHHHHcCCHHH
Confidence 3455555555555667777888 44566777765543 234788888999764 788888 445666654
Q ss_pred ------cccHHHHHHhhCCCChHHHHHHHHHHhccCCCCCCCHHHHHHHHHHhhc
Q 001827 188 ------NATSQAIIDCTLDVSESVRKAAYCVLANKFPLQSLSIKHRTMILKRGLA 236 (1009)
Q Consensus 188 ------~~tl~~il~R~rDv~~~VRr~ay~~L~~~v~~~~lsi~qR~~LL~~GL~ 236 (1009)
...++.++.-..--++..+..+...|.+ + ++...-|..+++.|+-
T Consensus 324 K~~m~~~giV~kL~kLl~s~~~~l~~~aLrlL~N-L---Sfd~~~R~~mV~~GlI 374 (708)
T PF05804_consen 324 KDEMAESGIVEKLLKLLPSENEDLVNVALRLLFN-L---SFDPELRSQMVSLGLI 374 (708)
T ss_pred HHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHH-h---CcCHHHHHHHHHCCCc
Confidence 3667776665555566777777776652 1 2345667777777763
No 174
>KOG3102 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.34 E-value=86 Score=33.71 Aligned_cols=45 Identities=18% Similarity=0.197 Sum_probs=31.9
Q ss_pred hcccCCCCCCCCCCCCCCCccCCCCCCcccchh---hhhhHHHHHhhh
Q 001827 933 KAKRDETSSDEEDSPTSAQYVVPSNPGSISTRS---ERASKTAALTKM 977 (1009)
Q Consensus 933 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 977 (1009)
|+.++++||+-+|+.-++.+++.++|+-...|+ ||--+.+.+--|
T Consensus 3 ~a~yggsSSs~seDe~~~e~~v~t~pg~~~~~rlP~~~lp~~dsil~p 50 (269)
T KOG3102|consen 3 RASYGGSSSSSSEDELSPESPVTTNPGEKDSIRLPPPPLPLLDSILSP 50 (269)
T ss_pred ccccCCCCCCccccccCccCCcccCCcccccccCCCCCCCchhhhcCC
Confidence 577788877777767778999999999777665 455555554444
No 175
>PF12457 TIP_N: Tuftelin interacting protein N terminal ; InterPro: IPR022159 This domain family is found in eukaryotes, and is typically between 99 and 114 amino acids in length. The family is found in association with PF01585 from PFAM. There are two completely conserved residues (G and F) that may be functionally important. TIP is involved in enamel assembly by interacting with one of the major proteins responsible for biomineralisation of enamel - tuftelin.
Probab=20.50 E-value=64 Score=31.26 Aligned_cols=15 Identities=0% Similarity=0.078 Sum_probs=7.5
Q ss_pred HHHHHhhhhccCCcc
Q 001827 970 KTAALTKMTASIIPT 984 (1009)
Q Consensus 970 ~~~~~~~~~~~~~~~ 984 (1009)
-|+.++=.|+.+...
T Consensus 68 yskpv~FVS~G~~~~ 82 (109)
T PF12457_consen 68 YSKPVNFVSGGVQQP 82 (109)
T ss_pred cCCCCceeeCCcccC
Confidence 344555555555433
No 176
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=20.41 E-value=2.2e+03 Score=28.98 Aligned_cols=74 Identities=15% Similarity=0.183 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHHhCCCChhHHHHHHHHHhcccCC-CCC--hHHHHHHHHhc---CCCCCHHHHHHHHhhCCCCcccHHH
Q 001827 120 EVWDEVIECMKVKVGDKVSVIRTFAVRSLSRFVND-SDN--SDILDLLLEVL---PLEQNADVRKTIVLSLPPSNATSQA 193 (1009)
Q Consensus 120 dl~~~l~~~ll~Rl~DK~~~VR~qAv~aL~rlQ~~-~~d--~~v~~~ll~~l---~~D~s~eVRraaL~~i~~~~~tl~~ 193 (1009)
+..+.+.+.|++-++|+...||--|+.+++|.-+- |.+ ++++...++++ ..|.+|.==..||..++...--+|.
T Consensus 337 eivE~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~~Lad~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLlps 416 (1133)
T KOG1943|consen 337 EIVEFVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLPPELADQVIGSVIDLFNPAEDDSAWHGACLALAELALRGLLLPS 416 (1133)
T ss_pred HHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHccCcHHHHHHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcchH
Confidence 67788999999999999999999999999999642 221 24555555533 2355555444445555544444443
Done!