Query 001827
Match_columns 1009
No_of_seqs 207 out of 290
Neff 6.2
Searched_HMMs 29240
Date Tue Mar 26 17:39:32 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/001827.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1121-1125//hhsearch_pdb/001827hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1b3u_A Protein (protein phosph 1.0 1 1 80.2 34.0 171 81-260 11-196 (588)
2 1b3u_A Protein (protein phosph 1.0 1 1 74.5 34.5 171 77-255 84-270 (588)
3 4fdd_A Transportin-1; heat rep 1.0 1 1 74.0 53.5 230 2-250 13-280 (852)
4 3ltm_A Alpha-REP4; protein eng 1.0 1 1 73.5 14.5 179 82-289 21-201 (211)
5 3ltm_A Alpha-REP4; protein eng 1.0 1 1 71.5 13.3 147 81-251 51-199 (211)
6 3ltj_A Alpharep-4; protein eng 1.0 1 1 71.5 12.9 150 77-250 11-162 (201)
7 3ltj_A Alpharep-4; protein eng 1.0 1 1 70.9 15.0 145 82-250 47-193 (201)
8 2qk2_A LP04448P; mini spindles 1.0 1 1 69.5 10.8 195 84-289 19-233 (242)
9 1oyz_A Hypothetical protein YI 1.0 1 1 67.9 15.7 156 82-250 56-216 (280)
10 1oyz_A Hypothetical protein YI 1.0 1 1 66.5 15.6 185 82-288 25-218 (280)
No 1
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=1.00 E-value=1 Score=80.25 Aligned_cols=171 Identities=12% Similarity=0.087 Sum_probs=119.3
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCC---CC-
Q ss_conf 99999987206895433769999999994099997679788999999998880798745999999997302089---99-
Q 001827 81 FLKFLLVAAMAANKTARFRACQIISEIIMRLPDDTEVSDEVWDEVIECMKVKVGDKVSVIRTFAVRSLSRFVND---SD- 156 (1009)
Q Consensus 81 ll~~Ll~~~~akdk~VR~R~cqli~~ll~~l~~~~~ide~l~~~l~~~ll~Rl~DK~~~VR~qAv~aL~rlQ~~---~~- 156 (1009)
-+..|+....+.|..+|..+++.++.+...+| ++..+..+...+...+ |.++.||..|+.+|+.|... +.
T Consensus 11 ~i~~l~~~l~s~~~~~R~~A~~~l~~i~~~~~-----~~~~~~~l~~~L~~~~-d~~~~vr~~~~~~L~~~~~~~~~~~~ 84 (588)
T 1b3u_A 11 PIAVLIDELRNEDVQLRLNSIKKLSTIALALG-----VERTRSELLPFLTDTI-YDEDEVLLALAEQLGTFTTLVGGPEY 84 (588)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHTHHHHHHHSC-----HHHHHHTHHHHHHHTC-CCCHHHHHHHHHHHTTCSGGGTSGGG
T ss_pred CHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHC-----HHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHCCCCHHH
T ss_conf 49999998506219999999971999999869-----7989998998898755-78589999999999778760585989
Q ss_pred CHHHHHHHHHHCCCCCCHHHHHHHHHHCCC---C-------CCCHHHHHHHHCCCCHHHHHHHHHHHHCCCCC-CCCCHH
Q ss_conf 947999999864899997799999860799---9-------66579999750789968999999998534898-777999
Q 001827 157 NSDILDLLLEVLPLEQNADVRKTIVLSLPP---S-------NATSQAIIDCTLDVSESVRKAAYCVLANKFPL-QSLSIK 225 (1009)
Q Consensus 157 d~~i~~~ll~~l~~D~s~eVRraaL~~i~~---~-------~~tl~~il~R~rDv~~~VRr~ay~~L~~~i~~-~~lsi~ 225 (1009)
...+...|..++ .|++++||.++...+.. . +..+|.+..-+.+.+..+|..+...++.-.+. ......
T Consensus 85 ~~~ll~~L~~l~-~~~~~~vR~~a~~~L~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~R~~a~~~l~~~~~~~~~~~~~ 163 (588)
T 1b3u_A 85 VHCLLPPLESLA-TVEETVVRDKAVESLRAISHEHSPSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKA 163 (588)
T ss_dssp GGGGHHHHHHHT-TSSCHHHHHHHHHHHHHHHTTSCHHHHHHTHHHHHHHHHTCSSHHHHHHHGGGHHHHTTTSCHHHHH
T ss_pred HHHHHHHHHHHH-HCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCHHHHH
T ss_conf 999899999987-4760799999999999999979999999999999999850777179999999999999856999999
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 99999998303998889999999999999864218
Q 001827 226 HRTMILKRGLADRSEAVSKECLKLMKDHWLAKHCN 260 (1009)
Q Consensus 226 qR~~LL~~GL~Dr~~~Vr~a~~~~L~~~Wl~~~~~ 260 (1009)
.-..++..+++|.++.||.++...| ..+.+ ..+
T Consensus 164 ~l~~~l~~l~~d~~~~VR~~a~~~l-~~l~~-~~~ 196 (588)
T 1b3u_A 164 ELRQYFRNLCSDDTPMVRRAAASKL-GEFAK-VLE 196 (588)
T ss_dssp HHHHHHHHHHTCSCHHHHHHHHHHH-HHHHH-TSC
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHH-HHHHH-HHC
T ss_conf 9999999984899788999999989-99999-816
No 2
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=1.00 E-value=1 Score=74.47 Aligned_cols=171 Identities=15% Similarity=0.085 Sum_probs=75.6
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCC
Q ss_conf 99999999998720689543376999999999409999767978899999999888079874599999999730208999
Q 001827 77 FLEDFLKFLLVAAMAANKTARFRACQIISEIIMRLPDDTEVSDEVWDEVIECMKVKVGDKVSVIRTFAVRSLSRFVNDSD 156 (1009)
Q Consensus 77 f~~~ll~~Ll~~~~akdk~VR~R~cqli~~ll~~l~~~~~ide~l~~~l~~~ll~Rl~DK~~~VR~qAv~aL~rlQ~~~~ 156 (1009)
+...++..|.......+..||-.++..+..+...++. +.+...+...+..-..+..+.+|..|+.+++.+...-.
T Consensus 84 ~~~~ll~~L~~l~~~~~~~vR~~a~~~L~~l~~~~~~-----~~~~~~l~~~l~~l~~~~~~~~R~~a~~~l~~~~~~~~ 158 (588)
T 1b3u_A 84 YVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSP-----SDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVS 158 (588)
T ss_dssp GGGGGHHHHHHHTTSSCHHHHHHHHHHHHHHHTTSCH-----HHHHHTHHHHHHHHHTCSSHHHHHHHGGGHHHHTTTSC
T ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCH-----HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCC
T ss_conf 9999899999987476079999999999999997999-----99999999999998507771799999999999998569
Q ss_pred C---HHHHHHHHHHCCCCCCHHHHHHHHHHCCCC----------CCCHHHHHHHHCCCCHHHHHHHHHHHHC---CCCCC
Q ss_conf 9---479999998648999977999998607999----------6657999975078996899999999853---48987
Q 001827 157 N---SDILDLLLEVLPLEQNADVRKTIVLSLPPS----------NATSQAIIDCTLDVSESVRKAAYCVLAN---KFPLQ 220 (1009)
Q Consensus 157 d---~~i~~~ll~~l~~D~s~eVRraaL~~i~~~----------~~tl~~il~R~rDv~~~VRr~ay~~L~~---~i~~~ 220 (1009)
+ ..+...+..++ .|++++||++++..+..- ...+|.++..+.|-++.||+.+...|+. .++-.
T Consensus 159 ~~~~~~l~~~l~~l~-~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~ 237 (588)
T 1b3u_A 159 SAVKAELRQYFRNLC-SDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQE 237 (588)
T ss_dssp HHHHHHHHHHHHHHH-TCSCHHHHHHHHHHHHHHHHTSCHHHHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCHH
T ss_pred HHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCHH
T ss_conf 999999999999984-8997889999999899999981677679999999998824992889998999999999857988
Q ss_pred CCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
Q ss_conf 77999999999983039988899999999999998
Q 001827 221 SLSIKHRTMILKRGLADRSEAVSKECLKLMKDHWL 255 (1009)
Q Consensus 221 ~lsi~qR~~LL~~GL~Dr~~~Vr~a~~~~L~~~Wl 255 (1009)
.....-..++...++|.+..||.++.+.| ....
T Consensus 238 -~~~~~~~~~l~~~~~d~~~~vR~~a~~~l-~~l~ 270 (588)
T 1b3u_A 238 -DLEALVMPTLRQAAEDKSWRVRYMVADKF-TELQ 270 (588)
T ss_dssp -HHHHHTHHHHHHHHTCSSHHHHHHHHHTH-HHHH
T ss_pred -HHHHHHHHHHHHHCCCCCHHHHHHHHHHH-HHHH
T ss_conf -88878999999980699778999999999-9999
No 3
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=1.00 E-value=1 Score=73.99 Aligned_cols=230 Identities=15% Similarity=0.156 Sum_probs=151.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH-HH-------
Q ss_conf 0799999998231353499999-99999951999215999999943121214567613689999999999-31-------
Q 001827 2 QVIAKILDESRTSYATHNRKLK-DLRAVRSKSPSTAQFSSAFFKTLTPLFTVQRRTASAERVVRFVSAFA-AT------- 72 (1009)
Q Consensus 2 ~~I~~iF~~aQ~s~~~H~k~~~-~L~~l~~~~~~~~~F~~~F~~~l~~iL~~~k~~~~~ervikFva~f~-~~------- 72 (1009)
+.+.++++.++..-...||.+. .|..+. +. ..|.. ++..++..-... +-.+++.|... ..
T Consensus 13 ~~l~~~l~~~~s~d~~~r~~Ae~~L~~~~-~~---p~~~~----~l~~il~~~~~~---~~~vR~~a~~~Lkn~i~~~w~ 81 (852)
T 4fdd_A 13 QQILQLLKESQSPDTTIQRTVQQKLEQLN-QY---PDFNN----YLIFVLTKLKSE---DEPTRSLSGLILKNNVKAHFQ 81 (852)
T ss_dssp HHHHHHHHHHTCSCHHHHHHHHHHHHHHT-TS---HHHHH----HHHHHHHTCTTS---CHHHHHHHHHHHHHHTTTSGG
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHH-HC---CCHHH----HHHHHHHCCCCC---CHHHHHHHHHHHHHHHHHCCC
T ss_conf 99999999873949899999999999987-09---98899----999998566889---867999999999998987447
Q ss_pred -CCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCC
Q ss_conf -1629999999999987206895433769999999994099997679788999999998880798745999999997302
Q 001827 73 -NNDEFLEDFLKFLLVAAMAANKTARFRACQIISEIIMRLPDDTEVSDEVWDEVIECMKVKVGDKVSVIRTFAVRSLSRF 151 (1009)
Q Consensus 73 -~~~~f~~~ll~~Ll~~~~akdk~VR~R~cqli~~ll~~l~~~~~ide~l~~~l~~~ll~Rl~DK~~~VR~qAv~aL~rl 151 (1009)
...+-...+-..++++....+..||..+++.|+.+...-+. +-|..+...+...+.+.++.+|..|+.+|+++
T Consensus 82 ~~~~~~~~~ik~~ll~~l~~~~~~vr~~~a~~i~~ia~~~~~------~~wp~ll~~L~~~l~~~~~~~r~~al~~L~~i 155 (852)
T 4fdd_A 82 NFPNGVTDFIKSECLNNIGDSSPLIRATVGILITTIASKGEL------QNWPDLLPKLCSLLDSEDYNTCEGAFGALQKI 155 (852)
T ss_dssp GCCHHHHHHHHHHHHTTTTCSSHHHHHHHHHHHHHHHHHTTT------TTCTTHHHHHHHHHSCSSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCC------CCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
T ss_conf 799999999999999987499899999999999999986481------35689999999987099989999999999999
Q ss_pred CCCCCC-----------HHHHHHHHHHCCCCCCHHHHHHHHHHCCCC------------CCCHHHHHHHHCCCCHHHHHH
Q ss_conf 089999-----------479999998648999977999998607999------------665799997507899689999
Q 001827 152 VNDSDN-----------SDILDLLLEVLPLEQNADVRKTIVLSLPPS------------NATSQAIIDCTLDVSESVRKA 208 (1009)
Q Consensus 152 Q~~~~d-----------~~i~~~ll~~l~~D~s~eVRraaL~~i~~~------------~~tl~~il~R~rDv~~~VRr~ 208 (1009)
.....+ ..++..|+..+. |++++||.+++..+... ...++.++..+.|.++.||+.
T Consensus 156 ~~~~~~~~~~~~~~~~~~~il~~l~~~l~-~~~~~vR~~A~~aL~~~~~~~~~~~~~~~~~~l~~l~~~~~d~~~~vr~~ 234 (852)
T 4fdd_A 156 CEDSAEILDSDVLDRPLNIMIPKFLQFFK-HSSPKIRSHAVACVNQFIISRTQALMLHIDSFIENLFALAGDEEPEVRKN 234 (852)
T ss_dssp HHHHTTHHHHCSSSSCHHHHHHHHTTTTT-CSSHHHHHHHHHHHHTTTTTTCHHHHTSHHHHHHHHHHHHTCCCHHHHHH
T ss_pred HHHHHHHHCHHHHCCHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHH
T ss_conf 99857875634313329999999999856-79789999999999999864638799889999999998717997789999
Q ss_pred HHHHHHC---CCC--CCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 9999853---489--87779999999999830399888999999999
Q 001827 209 AYCVLAN---KFP--LQSLSIKHRTMILKRGLADRSEAVSKECLKLM 250 (1009)
Q Consensus 209 ay~~L~~---~i~--~~~lsi~qR~~LL~~GL~Dr~~~Vr~a~~~~L 250 (1009)
++..|.. ..+ ++. .+.+-...+..+++|.++.||..+...+
T Consensus 235 a~~~L~~l~~~~~~~~~~-~l~~l~~~l~~~~~~~~~~vr~~a~e~l 280 (852)
T 4fdd_A 235 VCRALVMLLEVRMDRLLP-HMHNIVEYMLQRTQDQDENVALEACEFW 280 (852)
T ss_dssp HHHHHHHHHHHCHHHHGG-GHHHHHHHHHHHHTCSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCHHHHHH-HHHHHHHHHHHHCCCCCHHHHHHHHHHH
T ss_conf 999999999857798998-8999999999870699689999999999
No 4
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=1.00 E-value=1 Score=73.48 Aligned_cols=179 Identities=15% Similarity=0.158 Sum_probs=105.1
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCHHHH
Q ss_conf 99999872068954337699999999940999976797889999999988807987459999999973020899994799
Q 001827 82 LKFLLVAAMAANKTARFRACQIISEIIMRLPDDTEVSDEVWDEVIECMKVKVGDKVSVIRTFAVRSLSRFVNDSDNSDIL 161 (1009)
Q Consensus 82 l~~Ll~~~~akdk~VR~R~cqli~~ll~~l~~~~~ide~l~~~l~~~ll~Rl~DK~~~VR~qAv~aL~rlQ~~~~d~~i~ 161 (1009)
+..|+....+.+..||..++..+..+ ++ . .....++..+.|..+.||..|+.+|+++.+ ...+
T Consensus 21 ~~~L~~~L~~~~~~vR~~A~~~L~~~----~~-----~----~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~----~~~~ 83 (211)
T 3ltm_A 21 VEMYIKNLQDDSYYVRRAAAYALGKI----GD-----E----RAVEPLIKALKDEDAWVRRAAADALGQIGD----ERAV 83 (211)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHH----CC-----G----GGHHHHHHHTTCSCHHHHHHHHHHHHHHCC----GGGH
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHH----CC-----C----CHHHHHHHHHCCCCHHHHHHHHHHHHHHCC----HHHH
T ss_conf 99999987399999999999999872----87-----1----089999998829999999999999986588----8999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHCCC--CCCCHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCC
Q ss_conf 9999864899997799999860799--96657999975078996899999999853489877799999999998303998
Q 001827 162 DLLLEVLPLEQNADVRKTIVLSLPP--SNATSQAIIDCTLDVSESVRKAAYCVLANKFPLQSLSIKHRTMILKRGLADRS 239 (1009)
Q Consensus 162 ~~ll~~l~~D~s~eVRraaL~~i~~--~~~tl~~il~R~rDv~~~VRr~ay~~L~~~i~~~~lsi~qR~~LL~~GL~Dr~ 239 (1009)
..|+..+ .|++++||..++..+.. .+..++.++..+.|.++.||..+...|+. +... +-...|...|+|.+
T Consensus 84 ~~L~~~l-~~~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~-~~~~-----~~~~~L~~~l~d~~ 156 (211)
T 3ltm_A 84 EPLIKAL-KDEDGWVRQSAAVALGQIGDERAVEPLIKALKDEDWFVRIAAAFALGE-IGDE-----RAVEPLIKALKDED 156 (211)
T ss_dssp HHHHHHT-TCSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHH-HCCG-----GGHHHHHHHTTCSS
T ss_pred HHHHHHH-CCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCHHHHHHHHHHHHH-CCCH-----HHHHHHHHHHCCCC
T ss_conf 9999987-599889999999999985769999999998739899999999999987-1987-----79999999875998
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHH
Q ss_conf 88999999999999986421899888840139645438999999999842
Q 001827 240 EAVSKECLKLMKDHWLAKHCNGNPIELLKYLDVETYELVGESVMAALLKE 289 (1009)
Q Consensus 240 ~~Vr~a~~~~L~~~Wl~~~~~gdi~~LL~~LDV~~~~~vae~~L~~lf~~ 289 (1009)
+.||.++...|. ++. . ..-+..|...++- .++.+-..+..+|-+.
T Consensus 157 ~~vr~~a~~aL~--~~~-~-~~~~~~L~~~l~d-~~~~vr~~A~~aL~~~ 201 (211)
T 3ltm_A 157 GWVRQSAADALG--EIG-G-ERVRAAMEKLAET-GTGFARKVAVNYLETH 201 (211)
T ss_dssp HHHHHHHHHHHH--HHC-S-HHHHHHHHHHHHH-CCHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHH--HHC-C-HHHHHHHHHHHHC-CCHHHHHHHHHHHHHC
T ss_conf 999999999998--729-6-6589999999859-9889999999999852
No 5
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=1.00 E-value=1 Score=71.50 Aligned_cols=147 Identities=16% Similarity=0.170 Sum_probs=107.3
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCHHH
Q ss_conf 99999987206895433769999999994099997679788999999998880798745999999997302089999479
Q 001827 81 FLKFLLVAAMAANKTARFRACQIISEIIMRLPDDTEVSDEVWDEVIECMKVKVGDKVSVIRTFAVRSLSRFVNDSDNSDI 160 (1009)
Q Consensus 81 ll~~Ll~~~~akdk~VR~R~cqli~~ll~~l~~~~~ide~l~~~l~~~ll~Rl~DK~~~VR~qAv~aL~rlQ~~~~d~~i 160 (1009)
.+..|+......+..||..++..++.+ ++ .+. ...+...+.|.++.||..|+.+|+++.+ ...
T Consensus 51 ~~~~L~~~l~~~~~~vr~~a~~aL~~~----~~-----~~~----~~~L~~~l~~~~~~vr~~a~~aL~~~~~----~~~ 113 (211)
T 3ltm_A 51 AVEPLIKALKDEDAWVRRAAADALGQI----GD-----ERA----VEPLIKALKDEDGWVRQSAAVALGQIGD----ERA 113 (211)
T ss_dssp GHHHHHHHTTCSCHHHHHHHHHHHHHH----CC-----GGG----HHHHHHHTTCSSHHHHHHHHHHHHHHCC----GGG
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHH----CC-----HHH----HHHHHHHHCCCCHHHHHHHHHHHHHHCC----HHH
T ss_conf 899999988299999999999999865----88-----899----9999998759988999999999998576----999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHCC--CCCCCHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCC
Q ss_conf 9999986489999779999986079--99665799997507899689999999985348987779999999999830399
Q 001827 161 LDLLLEVLPLEQNADVRKTIVLSLP--PSNATSQAIIDCTLDVSESVRKAAYCVLANKFPLQSLSIKHRTMILKRGLADR 238 (1009)
Q Consensus 161 ~~~ll~~l~~D~s~eVRraaL~~i~--~~~~tl~~il~R~rDv~~~VRr~ay~~L~~~i~~~~lsi~qR~~LL~~GL~Dr 238 (1009)
+..|+..+ .|++++||..++..+. ..+..++.++..+.|.++.||..+...|+ .+.- ..-...|...|+|.
T Consensus 114 ~~~L~~~l-~d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~-~~~~-----~~~~~~L~~~l~d~ 186 (211)
T 3ltm_A 114 VEPLIKAL-KDEDWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADALG-EIGG-----ERVRAAMEKLAETG 186 (211)
T ss_dssp HHHHHHHT-TCSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHH-HHCS-----HHHHHHHHHHHHHC
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHHHHH-HHCC-----HHHHHHHHHHHHCC
T ss_conf 99999987-39899999999999987198779999999875998999999999998-7296-----65899999998599
Q ss_pred CHHHHHHHHHHHH
Q ss_conf 8889999999999
Q 001827 239 SEAVSKECLKLMK 251 (1009)
Q Consensus 239 ~~~Vr~a~~~~L~ 251 (1009)
++.||.++...|.
T Consensus 187 ~~~vr~~A~~aL~ 199 (211)
T 3ltm_A 187 TGFARKVAVNYLE 199 (211)
T ss_dssp CHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
T ss_conf 8899999999998
No 6
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=1.00 E-value=1 Score=71.48 Aligned_cols=150 Identities=17% Similarity=0.180 Sum_probs=99.9
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCC
Q ss_conf 99999999998720689543376999999999409999767978899999999888079874599999999730208999
Q 001827 77 FLEDFLKFLLVAAMAANKTARFRACQIISEIIMRLPDDTEVSDEVWDEVIECMKVKVGDKVSVIRTFAVRSLSRFVNDSD 156 (1009)
Q Consensus 77 f~~~ll~~Ll~~~~akdk~VR~R~cqli~~ll~~l~~~~~ide~l~~~l~~~ll~Rl~DK~~~VR~qAv~aL~rlQ~~~~ 156 (1009)
+.......++....+.+..||..++..+..+ ++ .+ ....++..+.|..+.||..|+.+|+++.+
T Consensus 11 ~~~~~~~~~i~~L~~~~~~vr~~A~~~L~~~----~~-----~~----~~~~L~~~l~~~~~~vr~~a~~~L~~~~~--- 74 (201)
T 3ltj_A 11 TDPEKVEMYIKNLQDDSYYVRRAAAYALGKI----GD-----ER----AVEPLIKALKDEDAWVRRAAADALGQIGD--- 74 (201)
T ss_dssp CCHHHHHHHHHHTTCSCHHHHHHHHHHHHHH----CC-----GG----GHHHHHHHTTCSSHHHHHHHHHHHHHHCC---
T ss_pred CCCCCHHHHHHHHCCCCHHHHHHHHHHHHHC----CC-----HH----HHHHHHHHHCCCCHHHHHHHHHHHHHHCC---
T ss_conf 6876458999986699999999999999850----77-----03----89999998739998999999999983288---
Q ss_pred CHHHHHHHHHHCCCCCCHHHHHHHHHHCCC--CCCCHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHH
Q ss_conf 947999999864899997799999860799--966579999750789968999999998534898777999999999983
Q 001827 157 NSDILDLLLEVLPLEQNADVRKTIVLSLPP--SNATSQAIIDCTLDVSESVRKAAYCVLANKFPLQSLSIKHRTMILKRG 234 (1009)
Q Consensus 157 d~~i~~~ll~~l~~D~s~eVRraaL~~i~~--~~~tl~~il~R~rDv~~~VRr~ay~~L~~~i~~~~lsi~qR~~LL~~G 234 (1009)
...+..|+..+ .|++++||..++..+.. .+..++.++..+.|.++.||..+...|+. +.- ..-...|...
T Consensus 75 -~~~~~~L~~~l-~d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~-~~~-----~~~~~~L~~~ 146 (201)
T 3ltj_A 75 -ERAVEPLIKAL-KDEDGWVRQSAAVALGQIGDERAVEPLIKALKDEDWFVRIAAAFALGE-IGD-----ERAVEPLIKA 146 (201)
T ss_dssp -GGGHHHHHHHT-TCSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHH-HTC-----GGGHHHHHHH
T ss_pred -HHHHHHHHHHH-CCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHHHHH-HCC-----HHHHHHHHHH
T ss_conf -89999999988-599789999999999974868899999999739989999999999998-588-----7899999999
Q ss_pred HCCCCHHHHHHHHHHH
Q ss_conf 0399888999999999
Q 001827 235 LADRSEAVSKECLKLM 250 (1009)
Q Consensus 235 L~Dr~~~Vr~a~~~~L 250 (1009)
|+|.++.||.++...|
T Consensus 147 l~d~~~~vr~~A~~aL 162 (201)
T 3ltj_A 147 LKDEDGWVRQSAADAL 162 (201)
T ss_dssp TTCSSHHHHHHHHHHH
T ss_pred HCCCCHHHHHHHHHHH
T ss_conf 7599889999999999
No 7
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=1.00 E-value=1 Score=70.93 Aligned_cols=145 Identities=16% Similarity=0.174 Sum_probs=82.7
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCHHHH
Q ss_conf 99999872068954337699999999940999976797889999999988807987459999999973020899994799
Q 001827 82 LKFLLVAAMAANKTARFRACQIISEIIMRLPDDTEVSDEVWDEVIECMKVKVGDKVSVIRTFAVRSLSRFVNDSDNSDIL 161 (1009)
Q Consensus 82 l~~Ll~~~~akdk~VR~R~cqli~~ll~~l~~~~~ide~l~~~l~~~ll~Rl~DK~~~VR~qAv~aL~rlQ~~~~d~~i~ 161 (1009)
+..|+......+..||..++..+..+ ++ .+ ....+...+.|.++.||..|+.+|+++.+ ...+
T Consensus 47 ~~~L~~~l~~~~~~vr~~a~~~L~~~----~~-----~~----~~~~L~~~l~d~~~~vr~~a~~aL~~~~~----~~~~ 109 (201)
T 3ltj_A 47 VEPLIKALKDEDAWVRRAAADALGQI----GD-----ER----AVEPLIKALKDEDGWVRQSAAVALGQIGD----ERAV 109 (201)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHH----CC-----GG----GHHHHHHHTTCSSHHHHHHHHHHHHHHCC----GGGH
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHH----CC-----HH----HHHHHHHHHCCCCHHHHHHHHHHHHHHCC----HHHH
T ss_conf 99999987399989999999999832----88-----89----99999998859978999999999997486----8899
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHCC--CCCCCHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCC
Q ss_conf 999986489999779999986079--996657999975078996899999999853489877799999999998303998
Q 001827 162 DLLLEVLPLEQNADVRKTIVLSLP--PSNATSQAIIDCTLDVSESVRKAAYCVLANKFPLQSLSIKHRTMILKRGLADRS 239 (1009)
Q Consensus 162 ~~ll~~l~~D~s~eVRraaL~~i~--~~~~tl~~il~R~rDv~~~VRr~ay~~L~~~i~~~~lsi~qR~~LL~~GL~Dr~ 239 (1009)
..|+..+ .|+++.||.+++..+. ..+..++.++..+.|.++.||..+...|+. ++ -..-...|...|+|.+
T Consensus 110 ~~L~~~l-~d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~A~~aL~~-~~-----~~~~~~~L~~~l~d~~ 182 (201)
T 3ltj_A 110 EPLIKAL-KDEDWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADALGE-IG-----GERVRAAMEKLAETGT 182 (201)
T ss_dssp HHHHHHT-TCSSHHHHHHHHHHHHHHTCGGGHHHHHHHTTCSSHHHHHHHHHHHHH-HC-----SHHHHHHHHHHHHHCC
T ss_pred HHHHHHH-CCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHHHHH-HC-----CHHHHHHHHHHHHCCC
T ss_conf 9999997-399899999999999985887899999999759988999999999998-68-----6468999999883898
Q ss_pred HHHHHHHHHHH
Q ss_conf 88999999999
Q 001827 240 EAVSKECLKLM 250 (1009)
Q Consensus 240 ~~Vr~a~~~~L 250 (1009)
+.||.++...|
T Consensus 183 ~~vr~~A~~aL 193 (201)
T 3ltj_A 183 GFARKVAVNYL 193 (201)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
T ss_conf 78999999999
No 8
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=1.00 E-value=1 Score=69.52 Aligned_cols=195 Identities=14% Similarity=0.188 Sum_probs=123.6
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHCCCCCCCC-----
Q ss_conf 99987206895433769999999994099997679788999999998880-798745999999997302089999-----
Q 001827 84 FLLVAAMAANKTARFRACQIISEIIMRLPDDTEVSDEVWDEVIECMKVKV-GDKVSVIRTFAVRSLSRFVNDSDN----- 157 (1009)
Q Consensus 84 ~Ll~~~~akdk~VR~R~cqli~~ll~~l~~~~~ide~l~~~l~~~ll~Rl-~DK~~~VR~qAv~aL~rlQ~~~~d----- 157 (1009)
.+.....+++-.+|.-+..-|..++..-+. +...-+..+...+..++ +|+++.||..|..+++.|...-..
T Consensus 19 ~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~---~~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~ 95 (242)
T 2qk2_A 19 DFYDKLEEKKWTLRKESLEVLEKLLTDHPK---LENGEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNY 95 (242)
T ss_dssp THHHHHTCSSHHHHHHHHHHHHHHHHHCSS---BCCCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHH
T ss_pred HHHHHHCCCCHHHHHHHHHHHHHHHCCCCC---CCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999662638789999999999998712888---88777999999999984568989999999999999999986617989
Q ss_pred -HHHHHHHHHHCCCCCCHHHHHHHHHHCC---C---CCCCHHHHHHHHCCCCHHHHHHHHHHHHCCC---CCCCC---CH
Q ss_conf -4799999986489999779999986079---9---9665799997507899689999999985348---98777---99
Q 001827 158 -SDILDLLLEVLPLEQNADVRKTIVLSLP---P---SNATSQAIIDCTLDVSESVRKAAYCVLANKF---PLQSL---SI 224 (1009)
Q Consensus 158 -~~i~~~ll~~l~~D~s~eVRraaL~~i~---~---~~~tl~~il~R~rDv~~~VRr~ay~~L~~~i---~~~~l---si 224 (1009)
..++..++..+ .|+++.||.++...+. . ....+|.++....|.++.||..+...|+.-+ ..... ..
T Consensus 96 ~~~ilp~ll~~l-~d~~~~vr~~a~~aL~~~~~~~~~~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~~~~~l 174 (242)
T 2qk2_A 96 ASACVPSLLEKF-KEKKPNVVTALREAIDAIYASTSLEAQQESIVESLSNKNPSVKSETALFIARALTRTQPTALNKKLL 174 (242)
T ss_dssp HHHHHHHHHHGG-GCCCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGGCCHHHH
T ss_pred HHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHH
T ss_conf 999999999997-6898899999999999999728999999999998848983999999999999998718877668999
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCC-HHHHHHHCCCCCCHHHHHHHHHHHHHH
Q ss_conf 99999999830399888999999999999986421899-888840139645438999999999842
Q 001827 225 KHRTMILKRGLADRSEAVSKECLKLMKDHWLAKHCNGN-PIELLKYLDVETYELVGESVMAALLKE 289 (1009)
Q Consensus 225 ~qR~~LL~~GL~Dr~~~Vr~a~~~~L~~~Wl~~~~~gd-i~~LL~~LDV~~~~~vae~~L~~lf~~ 289 (1009)
..-+..|..+|+|+...||+++...+. .-.. ..+.+ +..++..|| ......++..++.
T Consensus 175 ~~l~p~l~~~l~D~~~~VR~~A~~~l~-~l~~-~vg~~~~~~~l~~L~-----~~~~~~i~~~~~~ 233 (242)
T 2qk2_A 175 KLLTTSLVKTLNEPDPTVRDSSAEALG-TLIK-LMGDKAVTPLLADVD-----PLKMAKIKECQEK 233 (242)
T ss_dssp HHHHHHHHHHHTSSCHHHHHHHHHHHH-HHHH-HHCHHHHGGGGTTSC-----HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHH-HHHH-HCCHHHHHHHHHHCC-----HHHHHHHHHHHHH
T ss_conf 999999998846998589999999999-9999-849999999998527-----9999999999988
No 9
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=1.00 E-value=1 Score=67.91 Aligned_cols=156 Identities=17% Similarity=0.169 Sum_probs=71.5
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHH-HHCCCCHHHHHHHHHHHHCCCCCC--CCH
Q ss_conf 99999872068954337699999999940999976797889999999988-807987459999999973020899--994
Q 001827 82 LKFLLVAAMAANKTARFRACQIISEIIMRLPDDTEVSDEVWDEVIECMKV-KVGDKVSVIRTFAVRSLSRFVNDS--DNS 158 (1009)
Q Consensus 82 l~~Ll~~~~akdk~VR~R~cqli~~ll~~l~~~~~ide~l~~~l~~~ll~-Rl~DK~~~VR~qAv~aL~rlQ~~~--~d~ 158 (1009)
+..|+....+.+..||..++..++.+ +.... ....+...+.. -+.|..+.||..|+.+|+++.... ...
T Consensus 56 ~~~L~~~l~d~~~~vR~~A~~aL~~l----~~~~~----~~~~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~~~~ 127 (280)
T 1oyz_A 56 VRLAIEFCSDKNYIRRDIGAFILGQI----KICKK----CEDNVFNILNNMALNDKSACVRATAIESTAQRCKKNPIYSP 127 (280)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHS----CCCTT----THHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGGHH
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHH----CCCCC----CCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCH
T ss_conf 99999987499899999999999985----43531----31689999999875499899999999999987034771339
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHCCC--CCCCHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHC
Q ss_conf 7999999864899997799999860799--96657999975078996899999999853489877799999999998303
Q 001827 159 DILDLLLEVLPLEQNADVRKTIVLSLPP--SNATSQAIIDCTLDVSESVRKAAYCVLANKFPLQSLSIKHRTMILKRGLA 236 (1009)
Q Consensus 159 ~i~~~ll~~l~~D~s~eVRraaL~~i~~--~~~tl~~il~R~rDv~~~VRr~ay~~L~~~i~~~~lsi~qR~~LL~~GL~ 236 (1009)
.++..|+..+ .|+++.||.+++..+.. ++..++.++..+.|.+..||..+...|+. +.. -+..- ...|...|+
T Consensus 128 ~~~~~L~~~l-~d~~~~vR~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~-~~~--~~~~~-~~~L~~~l~ 202 (280)
T 1oyz_A 128 KIVEQSQITA-FDKSTNVRRATAFAISVINDKATIPLLINLLKDPNGDVRNWAAFAINI-NKY--DNSDI-RDCFVEMLQ 202 (280)
T ss_dssp HHHHHHHHHT-TCSCHHHHHHHHHHHHTC---CCHHHHHHHHTCSSHHHHHHHHHHHHH-HTC--CCHHH-HHHHHHHTT
T ss_pred HHHHHHHHHH-HCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHH-HCC--CCHHH-HHHHHHHHC
T ss_conf 9999999996-199999999999998733878789999998749988999999999986-253--76999-999999834
Q ss_pred CCCHHHHHHHHHHH
Q ss_conf 99888999999999
Q 001827 237 DRSEAVSKECLKLM 250 (1009)
Q Consensus 237 Dr~~~Vr~a~~~~L 250 (1009)
|.++.||..+...|
T Consensus 203 d~~~~vR~~A~~aL 216 (280)
T 1oyz_A 203 DKNEEVRIEAIIGL 216 (280)
T ss_dssp CSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH
T ss_conf 99989999999999
No 10
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=1.00 E-value=1 Score=66.50 Aligned_cols=185 Identities=15% Similarity=0.060 Sum_probs=122.2
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCH-HH
Q ss_conf 99999872068954337699999999940999976797889999999988807987459999999973020899994-79
Q 001827 82 LKFLLVAAMAANKTARFRACQIISEIIMRLPDDTEVSDEVWDEVIECMKVKVGDKVSVIRTFAVRSLSRFVNDSDNS-DI 160 (1009)
Q Consensus 82 l~~Ll~~~~akdk~VR~R~cqli~~ll~~l~~~~~ide~l~~~l~~~ll~Rl~DK~~~VR~qAv~aL~rlQ~~~~d~-~i 160 (1009)
+..|+......+..||..++..+..+ + +. .....+...+.|..+.||..|+.+|+++...+... .+
T Consensus 25 i~~L~~~L~~~~~~vr~~A~~~L~~~----~-----~~----~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~~~~~l 91 (280)
T 1oyz_A 25 DDELFRLLDDHNSLKRISSARVLQLR----G-----GQ----DAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCEDNV 91 (280)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHH----C-----CH----HHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHCC----C-----CC----HHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCHHH
T ss_conf 79999999828979999999998715----8-----80----49999999874998999999999999854353131689
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHCCC--------CCCCHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHH
Q ss_conf 99999864899997799999860799--------9665799997507899689999999985348987779999999999
Q 001827 161 LDLLLEVLPLEQNADVRKTIVLSLPP--------SNATSQAIIDCTLDVSESVRKAAYCVLANKFPLQSLSIKHRTMILK 232 (1009)
Q Consensus 161 ~~~ll~~l~~D~s~eVRraaL~~i~~--------~~~tl~~il~R~rDv~~~VRr~ay~~L~~~i~~~~lsi~qR~~LL~ 232 (1009)
+..|...+.+|++++||.+++..+.. .+..++.++..+.|.++.||..+...|+. +.-.. -...|.
T Consensus 92 ~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~-~~~~~-----~~~~L~ 165 (280)
T 1oyz_A 92 FNILNNMALNDKSACVRATAIESTAQRCKKNPIYSPKIVEQSQITAFDKSTNVRRATAFAISV-INDKA-----TIPLLI 165 (280)
T ss_dssp HHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHTTCSCHHHHHHHHHHHHT-C---C-----CHHHHH
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHH-CCCHH-----HHHHHH
T ss_conf 999999875499899999999999987034771339999999999619999999999999873-38787-----899999
Q ss_pred HHHCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCHHHHHHHHHHHHH
Q ss_conf 83039988899999999999998642189988884013964543899999999984
Q 001827 233 RGLADRSEAVSKECLKLMKDHWLAKHCNGNPIELLKYLDVETYELVGESVMAALLK 288 (1009)
Q Consensus 233 ~GL~Dr~~~Vr~a~~~~L~~~Wl~~~~~gdi~~LL~~LDV~~~~~vae~~L~~lf~ 288 (1009)
..|+|.++.||..+...|. . +......-+..|+..|+- .++.+...++.+|-.
T Consensus 166 ~~l~d~~~~vr~~a~~aL~-~-~~~~~~~~~~~L~~~l~d-~~~~vR~~A~~aL~~ 218 (280)
T 1oyz_A 166 NLLKDPNGDVRNWAAFAIN-I-NKYDNSDIRDCFVEMLQD-KNEEVRIEAIIGLSY 218 (280)
T ss_dssp HHHTCSSHHHHHHHHHHHH-H-HTCCCHHHHHHHHHHTTC-SCHHHHHHHHHHHHH
T ss_pred HHHCCCCHHHHHHHHHHHH-H-HCCCCHHHHHHHHHHHCC-CCHHHHHHHHHHHHH
T ss_conf 9874998899999999998-6-253769999999998349-998999999999998
Done!