BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 001828
         (1008 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2W2I|A Chain A, Crystal Structure Of The Human 2-Oxoglutarate Oxygenase
           Loc390245
 pdb|2W2I|B Chain B, Crystal Structure Of The Human 2-Oxoglutarate Oxygenase
           Loc390245
 pdb|2W2I|C Chain C, Crystal Structure Of The Human 2-Oxoglutarate Oxygenase
           Loc390245
          Length = 358

 Score = 34.3 bits (77), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 29/104 (27%), Positives = 41/104 (39%), Gaps = 13/104 (12%)

Query: 848 GSSLVHSLLTETLPSWFISVHGLVQEGGESGCMVGMLG-GYALAYFAVFCATFAWGVDS- 905
           G+ +  SL  E+   W +   G + +  E  C V + G      YF ++  TFAW  +  
Sbjct: 156 GADISGSLFEESTKQWNLGHLGTILDLLEQECGVVIEGVNTPYLYFGMWKTTFAWHTEDM 215

Query: 906 -----------ESRASKKRPTVLGTHLEFLASALDRKISVGCDC 938
                      E +     P   G HLE LA  L   IS GC+ 
Sbjct: 216 DLYSINYLHFGEPKTWYVVPPEHGQHLERLARELFPDISRGCEA 259


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.321    0.134    0.415 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,057,401
Number of Sequences: 62578
Number of extensions: 897309
Number of successful extensions: 1730
Number of sequences better than 100.0: 1
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1730
Number of HSP's gapped (non-prelim): 1
length of query: 1008
length of database: 14,973,337
effective HSP length: 108
effective length of query: 900
effective length of database: 8,214,913
effective search space: 7393421700
effective search space used: 7393421700
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.2 bits)