BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 001828
(1008 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|F4IN69|MD33B_ARATH Mediator of RNA polymerase II transcription subunit 33B
OS=Arabidopsis thaliana GN=MED33B PE=1 SV=1
Length = 1275
Score = 1208 bits (3125), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 629/994 (63%), Positives = 754/994 (75%), Gaps = 50/994 (5%)
Query: 36 ALQVVNGTTWHDTFLG-------------------LWIAALRLLQRERDPSEGPVPRIDS 76
ALQ N T+WHD FL ++ L +L ERDP EGPVPR D+
Sbjct: 305 ALQAANSTSWHDAFLALWLAALRLVQRENLCLRYCFFMHMLEILSEERDPIEGPVPRTDT 364
Query: 77 SLCMVLSVTTLTVADIIEEEESELIDETEQSPSNLPKDKQAPGRRRKDLVTSLQLLGDFE 136
LC++LSVT L VA+IIEEEES+ ID+T SPSN K+K+ G+ R+ L+ SLQ LGD+E
Sbjct: 365 FLCVLLSVTPLAVANIIEEEESQWIDQTSSSPSNQWKEKK--GKCRQGLINSLQQLGDYE 422
Query: 137 DMLTPPPFVRSIANQAAAKAIMFISGLTVGNGYYESVSMNGLATSCLGNMRHLIVEACIA 196
+LTPP V+S+ANQAAAKAIMFISG+T NG YE+ SM+ A+ C C
Sbjct: 423 SLLTPPRSVQSVANQAAAKAIMFISGITNSNGSYENTSMSESASGC-----------CKV 471
Query: 197 R-NLLDTSAYLWPGYVNASDSNQVPCSIATQMSGWSSLMKGSPLTPSLTNALVVTPASSL 255
R +L ++ G + C+I S WS +MKGSPLTPSLTN+L+ TPASSL
Sbjct: 472 RFSLFTLKMFVVMGVY-------LLCNI----SCWSLVMKGSPLTPSLTNSLITTPASSL 520
Query: 256 AEIEKVYEIAVNGSDDEKICAATVLCGASLVRGWSVQENTILFIIKLLSPPVPADYSGSE 315
AEIEK+YE+A GS+DEKI A++LCGASL RGWS+QE+ I+FI+ LLSPP PAD SGS
Sbjct: 521 AEIEKMYEVATTGSEDEKIAVASILCGASLFRGWSIQEHVIIFIVTLLSPPAPADLSGSY 580
Query: 316 SHLIGYAALLNTLLVGISSVDCIQIFSLHGWVPLLAAALMPICEVFGSSIPNASWTLSSG 375
SHLI A LN LLVGIS +DC+ IFSLHG VPLLA ALMPICE FGS +PN +WTL +G
Sbjct: 581 SHLINSAPFLNVLLVGISPIDCVHIFSLHGVVPLLAGALMPICEAFGSGVPNITWTLPTG 640
Query: 376 EEFSCYAVFSNAFTILVRLWRFHKPPLEQLTVDMPLVASQLSPEYLLLVRNSKLASFGTS 435
E S +AVFS AFT+L+RLWRF PPL+ + D+P V Q SPEYLLLVRN +L FG S
Sbjct: 641 ELISSHAVFSTAFTLLLRLWRFDHPPLDYVLGDVPPVGPQPSPEYLLLVRNCRLECFGKS 700
Query: 436 PKDQMKSKRFSKNIKFSTDPIFMDSFPKLKRWYRQNEECIASTLTGLVHGTSVHLIVDAL 495
PKD+M +RFSK I S DPIFMDSFP+LK+WYRQ++EC+AS L+ L G+ VH IVD+L
Sbjct: 701 PKDRMARRRFSKVIDISVDPIFMDSFPRLKQWYRQHQECMASILSELKTGSPVHHIVDSL 760
Query: 496 LTKMFRKINRSGTPLTSATSGSTNSSGSGLEDVSIKLKVPAWDILEATPFVLDAALAACA 555
L+ MF+K N+ G+ + +SGS++ S SG +D S +LK+PAWDILEA PFVLDAAL ACA
Sbjct: 761 LSMMFKKANKGGSQSLTPSSGSSSLSTSGGDDSSDQLKLPAWDILEAAPFVLDAALTACA 820
Query: 556 HGRLSPRELATGLKELSDCLPATLATVVSYFSAEVTRGLWKPAFMNGTDWPSPATNLSSI 615
HG LSPRELATGLK L+D LPATL T+VSYFS+EVTRGLWKP MNGTDWPSPA NL+S+
Sbjct: 821 HGSLSPRELATGLKILADFLPATLGTMVSYFSSEVTRGLWKPVSMNGTDWPSPAANLASV 880
Query: 616 EQQIKKILAATGVDVPTVAVGGNSPATLPLPLAALVSLTITFKLDKASDRFLALVGLGLS 675
EQQI+KILAATGVDVP + G S ATLPLPLAALVSLTIT+KLDKA++RFL LVG L
Sbjct: 881 EQQIEKILAATGVDVPRLPADGISAATLPLPLAALVSLTITYKLDKATERFLVLVGPALD 940
Query: 676 SLASSCPWPCMPIVASLWAQKVKRWNDFLVFSASGTVFHYNTDAVVQLLKSCFTSTLGLT 735
SLA++CPWPCMPIV SLW QKVKRW+DFL+FSAS TVFH+N DAV+QLL+SCFT TLGLT
Sbjct: 941 SLAAACPWPCMPIVTSLWTQKVKRWSDFLIFSASRTVFHHNRDAVIQLLRSCFTCTLGLT 1000
Query: 736 -SSHNYSNGGVGALLGHGFGSHFSGGISPVGPGILYLRVHRSVRDVMFMKEEILSILMHC 794
+S S GGVGALLGHGFGS +SGGIS PGILY++VHRS+RDVMF+ EEILS+LM
Sbjct: 1001 PTSQLCSYGGVGALLGHGFGSRYSGGISTAAPGILYIKVHRSIRDVMFLTEEILSLLMFS 1060
Query: 795 VRDIASCGLPREKLEKLKKTKHGMRY--GQVSLAAAMTRAKLAASLGASLVWISGGSSLV 852
V+ IA+ LP + EKLKKTK G RY GQVSL+ AM R KLAASLGASLVWISGG +LV
Sbjct: 1061 VKSIATRELPAGQAEKLKKTKDGSRYGIGQVSLSLAMRRVKLAASLGASLVWISGGLNLV 1120
Query: 853 HSLLTETLPSWFISVHGLVQEGGESGCMVGMLGGYALAYFAVFCATFAWGVDSESRASKK 912
+L+ ETLPSWFISVHG E E G MV ML GYALAYFA+ + FAWGVDS ASK+
Sbjct: 1121 QALIKETLPSWFISVHG---EEDELGGMVPMLRGYALAYFAILSSAFAWGVDSSYPASKR 1177
Query: 913 RPTVLGTHLEFLASALDRKISVGCDCATWRAYVSGFVTLIVGCTPTWMLEINVDALKRLS 972
RP VL HLEF+ SAL+ KIS+GCD ATW+AYV+GFV+L+V CTP W+LE++V+ +KRLS
Sbjct: 1178 RPRVLWLHLEFMVSALEGKISLGCDWATWQAYVTGFVSLMVQCTPAWVLEVDVEVIKRLS 1237
Query: 973 KGLRQWDEEELALTLLGVGGVGAMGAAAQLIVES 1006
K LRQW+E++LAL LL GG+G MGAA +LIVE+
Sbjct: 1238 KSLRQWNEQDLALALLCAGGLGTMGAATELIVET 1271
>sp|Q9LUG9|MD33A_ARATH Mediator of RNA polymerase II transcription subunit 33A
OS=Arabidopsis thaliana GN=MED33A PE=1 SV=1
Length = 1309
Score = 1176 bits (3042), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 587/971 (60%), Positives = 739/971 (76%), Gaps = 22/971 (2%)
Query: 37 LQVVNGTTWHDTFLGLWIAALRLLQRERDPSEGPVPRIDSSLCMVLSVTTLTVADIIEEE 96
L+ +NG+TWHDTFLGLWIAALRL+QRERDP EGP+PR+D+ LCM L + L VA++IEE
Sbjct: 356 LKEINGSTWHDTFLGLWIAALRLVQRERDPIEGPIPRLDTRLCMSLCIVPLVVANLIEEG 415
Query: 97 ESELIDETEQSPSNLPKDKQAPGRRRKDLVTSLQLLGDFEDMLTPPPFVRSIANQAAAKA 156
+ E + E + R DLVTSLQ+LGDF +L PP V S AN+AA KA
Sbjct: 416 KYESVME----------------KLRDDLVTSLQVLGDFPGLLAPPKCVVSAANKAATKA 459
Query: 157 IMFISGLTVGNGYYESVSMNGLATSCLGNMRHLIVEACIARNLLDTSAYLWPGYVNASDS 216
I+F+SG VG ++ ++M + +C GNMRHLIVEACIARN+LD SAY WPGYVN
Sbjct: 460 ILFLSGGNVGKSCFDVINMKDMPVNCSGNMRHLIVEACIARNILDMSAYSWPGYVNGR-I 518
Query: 217 NQVPCSIATQMSGWSSLMKGSPLTPSLTNALVVTPASSLAEIEKVYEIAVNGSDDEKICA 276
NQ+P S+ ++ WSS +KG+PL ++ N LV PASSLAE+EK++E+AV GSDDEKI A
Sbjct: 519 NQIPQSLPNEVPCWSSFVKGAPLNAAMVNTLVSVPASSLAELEKLFEVAVKGSDDEKISA 578
Query: 277 ATVLCGASLVRGWSVQENTILFIIKLLSPPVPADYSGSESHLIGYAALLNTLLVGISSVD 336
ATVLCGASL RGW++QE+T+ ++ +LLSPPVPADYS +E+HLIGYA +LN ++VGI SVD
Sbjct: 579 ATVLCGASLTRGWNIQEHTVEYLTRLLSPPVPADYSRAENHLIGYACMLNVVIVGIGSVD 638
Query: 337 CIQIFSLHGWVPLLAAALMPICEVFGSSIPNASWTLSSGEEFSCYAVFSNAFTILVRLWR 396
IQIFSLHG VP LA +LMPICE FGS P+ SWTL SGE S Y+VFSNAFT+L++LWR
Sbjct: 639 SIQIFSLHGMVPQLACSLMPICEEFGSYTPSVSWTLPSGEAISAYSVFSNAFTLLLKLWR 698
Query: 397 FHKPPLEQLTVDMPLVASQLSPEYLLLVRNSKLASFGTSPKDQMKSKRFSKNIKF-STDP 455
F+ PP+E D+P V SQL+PE+LL VRNS L S +D+ + KR S+ + S P
Sbjct: 699 FNHPPIEHGVGDVPTVGSQLTPEHLLSVRNSYLVSSEILDRDRNR-KRLSEVARAASCQP 757
Query: 456 IFMDSFPKLKRWYRQNEECIASTLTGLVHGTSVHLIVDALLTKMFRKINRSGTPLTSATS 515
+F+DSFPKLK WYRQ++ CIA+TL+GL HG+ VH V+ALL F K+ S T L S
Sbjct: 758 VFVDSFPKLKVWYRQHQRCIAATLSGLTHGSPVHQTVEALLNMTFGKVRGSQT-LNPVNS 816
Query: 516 GSTNSSGSGLEDVSIKLKVPAWDILEATPFVLDAALAACAHGRLSPRELATGLKELSDCL 575
G+++SSG+ ED +I+ + PAWDIL+A P+V+DAAL AC HGRLSPR+LATGLK+L+D L
Sbjct: 817 GTSSSSGAASEDSNIRPEFPAWDILKAVPYVVDAALTACTHGRLSPRQLATGLKDLADFL 876
Query: 576 PATLATVVSYFSAEVTRGLWKPAFMNGTDWPSPATNLSSIEQQIKKILAATGVDVPTVAV 635
PA+LAT+VSYFSAEV+RG+WKP FMNG DWPSPATNLS++E+ I KILA TGVD+P++A
Sbjct: 877 PASLATIVSYFSAEVSRGVWKPVFMNGVDWPSPATNLSTVEEYITKILATTGVDIPSLAP 936
Query: 636 GGNSPATLPLPLAALVSLTITFKLDKASDRFLALVGLGLSSLASSCPWPCMPIVASLWAQ 695
GG+SPATLPLPLAA VSLTIT+K+DKAS+RFL L G L LA+ CPWPCMPIVASLW Q
Sbjct: 937 GGSSPATLPLPLAAFVSLTITYKIDKASERFLNLAGPALECLAAGCPWPCMPIVASLWTQ 996
Query: 696 KVKRWNDFLVFSASGTVFHYNTDAVVQLLKSCFTSTLGLTSSHNYSNGGVGALLGHGFGS 755
K KRW DFLVFSAS TVF +N DAV+QLL++CF++TLGL ++ ++GGVGALLGHGFGS
Sbjct: 997 KAKRWFDFLVFSASRTVFLHNQDAVIQLLRNCFSATLGLNAAPMSNDGGVGALLGHGFGS 1056
Query: 756 HFSGGISPVGPGILYLRVHRSVRDVMFMKEEILSILMHCVRDIASCGLPREKLEKLKKTK 815
HF GGISPV PGILYLR++R++RD + + EEILS+L+H V DIA L +EKLEKLK K
Sbjct: 1057 HFYGGISPVAPGILYLRMYRALRDTVSVSEEILSLLIHSVEDIAQNRLSKEKLEKLKTVK 1116
Query: 816 HGMRYGQVSLAAAMTRAKLAASLGASLVWISGGSSLVHSLLTETLPSWFISVHGLVQEGG 875
+G RYGQ SLA AMT+ KLAASL ASLVW++GG +VH L+ ET+PSWF+S +E G
Sbjct: 1117 NGSRYGQSSLATAMTQVKLAASLSASLVWLTGGLGVVHVLIKETIPSWFLSTDKSDREQG 1176
Query: 876 ESGCMVGMLGGYALAYFAVFCATFAWGVD-SESRASKKRPTVLGTHLEFLASALDRKISV 934
S +V L G+ALAYF V C WGVD S + ++R +LG+HLEF+ASALD KISV
Sbjct: 1177 PSD-LVAELRGHALAYFVVLCGALTWGVDSRSSASKRRRQAILGSHLEFIASALDGKISV 1235
Query: 935 GCDCATWRAYVSGFVTLIVGCTPTWMLEINVDALKRLSKGLRQWDEEELALTLLGVGGVG 994
GC+ ATWR Y+SG V+L+V C P W+ EI+ + LK LS GLR+W ++ELA+ LL +GG+
Sbjct: 1236 GCETATWRTYISGLVSLMVSCLPLWVTEIDTEVLKSLSNGLRKWGKDELAIVLLSLGGLK 1295
Query: 995 AMGAAAQLIVE 1005
M AA I+
Sbjct: 1296 TMDYAADFIIH 1306
>sp|Q8YG89|SYC_BRUME Cysteine--tRNA ligase OS=Brucella melitensis biotype 1 (strain 16M
/ ATCC 23456 / NCTC 10094) GN=cysS PE=3 SV=1
Length = 506
Score = 35.4 bits (80), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 24/54 (44%)
Query: 556 HGRLSPRELATGLKELSDCLPATLATVVSYFSAEVTRGLWKPAFMNGTDWPSPA 609
+ R PR A + L + L V SY E+ LWKP+ WPSPA
Sbjct: 163 NARKGPRYGALARRSLDEMLAGARVDVASYKRDEMDFVLWKPSKKGEPGWPSPA 216
>sp|C0RI19|SYC_BRUMB Cysteine--tRNA ligase OS=Brucella melitensis biotype 2 (strain ATCC
23457) GN=cysS PE=3 SV=1
Length = 506
Score = 35.4 bits (80), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 24/54 (44%)
Query: 556 HGRLSPRELATGLKELSDCLPATLATVVSYFSAEVTRGLWKPAFMNGTDWPSPA 609
+ R PR A + L + L V SY E+ LWKP+ WPSPA
Sbjct: 163 NARKGPRYGALARRSLDEMLAGARVDVASYKRDEMDFVLWKPSKKGEPGWPSPA 216
>sp|Q8G1N5|SYC_BRUSU Cysteine--tRNA ligase OS=Brucella suis biovar 1 (strain 1330)
GN=cysS PE=3 SV=1
Length = 506
Score = 35.4 bits (80), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 24/54 (44%)
Query: 556 HGRLSPRELATGLKELSDCLPATLATVVSYFSAEVTRGLWKPAFMNGTDWPSPA 609
+ R PR A + L + L V SY E+ LWKP+ WPSPA
Sbjct: 163 NARKGPRYGALARRSLDEMLAGARVDVASYKRDEMDFVLWKPSKKGEPGWPSPA 216
>sp|A9MA50|SYC_BRUC2 Cysteine--tRNA ligase OS=Brucella canis (strain ATCC 23365 / NCTC
10854) GN=cysS PE=3 SV=1
Length = 506
Score = 35.4 bits (80), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 24/54 (44%)
Query: 556 HGRLSPRELATGLKELSDCLPATLATVVSYFSAEVTRGLWKPAFMNGTDWPSPA 609
+ R PR A + L + L V SY E+ LWKP+ WPSPA
Sbjct: 163 NARKGPRYGALARRSLDEMLAGARVDVASYKRDEMDFVLWKPSKKGEPGWPSPA 216
>sp|B0CL02|SYC_BRUSI Cysteine--tRNA ligase OS=Brucella suis (strain ATCC 23445 / NCTC
10510) GN=cysS PE=3 SV=1
Length = 506
Score = 35.4 bits (80), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 24/54 (44%)
Query: 556 HGRLSPRELATGLKELSDCLPATLATVVSYFSAEVTRGLWKPAFMNGTDWPSPA 609
+ R PR A + L + L V SY E+ LWKP+ WPSPA
Sbjct: 163 NARKGPRYGALARRSLDEMLAGARVDVASYKRDEMDFVLWKPSKKGEPGWPSPA 216
>sp|Q57E65|SYC_BRUAB Cysteine--tRNA ligase OS=Brucella abortus biovar 1 (strain 9-941)
GN=cysS PE=3 SV=1
Length = 506
Score = 35.4 bits (80), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 24/54 (44%)
Query: 556 HGRLSPRELATGLKELSDCLPATLATVVSYFSAEVTRGLWKPAFMNGTDWPSPA 609
+ R PR A + L + L V SY E+ LWKP+ WPSPA
Sbjct: 163 NARKGPRYGALARRSLDEMLAGARVDVASYKRDEMDFVLWKPSKKGEPGWPSPA 216
>sp|Q2YN22|SYC_BRUA2 Cysteine--tRNA ligase OS=Brucella abortus (strain 2308) GN=cysS
PE=3 SV=1
Length = 506
Score = 35.4 bits (80), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 24/54 (44%)
Query: 556 HGRLSPRELATGLKELSDCLPATLATVVSYFSAEVTRGLWKPAFMNGTDWPSPA 609
+ R PR A + L + L V SY E+ LWKP+ WPSPA
Sbjct: 163 NARKGPRYGALARRSLDEMLAGARVDVASYKRDEMDFVLWKPSKKGEPGWPSPA 216
>sp|B2S4T7|SYC_BRUA1 Cysteine--tRNA ligase OS=Brucella abortus (strain S19) GN=cysS PE=3
SV=1
Length = 506
Score = 35.4 bits (80), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 24/54 (44%)
Query: 556 HGRLSPRELATGLKELSDCLPATLATVVSYFSAEVTRGLWKPAFMNGTDWPSPA 609
+ R PR A + L + L V SY E+ LWKP+ WPSPA
Sbjct: 163 NARKGPRYGALARRSLDEMLAGARVDVASYKRDEMDFVLWKPSKKGEPGWPSPA 216
>sp|A5VPL3|SYC_BRUO2 Cysteine--tRNA ligase OS=Brucella ovis (strain ATCC 25840 / 63/290
/ NCTC 10512) GN=cysS PE=3 SV=1
Length = 506
Score = 35.0 bits (79), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 23/52 (44%)
Query: 558 RLSPRELATGLKELSDCLPATLATVVSYFSAEVTRGLWKPAFMNGTDWPSPA 609
R PR A + L + L V SY E+ LWKP+ WPSPA
Sbjct: 165 RKGPRYGALARRSLDEMLAGARVDVASYKRDEMDFVLWKPSKKGEPGWPSPA 216
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.134 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 361,250,202
Number of Sequences: 539616
Number of extensions: 14895371
Number of successful extensions: 38896
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 38870
Number of HSP's gapped (non-prelim): 21
length of query: 1008
length of database: 191,569,459
effective HSP length: 128
effective length of query: 880
effective length of database: 122,498,611
effective search space: 107798777680
effective search space used: 107798777680
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 66 (30.0 bits)