Query 001828
Match_columns 1008
No_of_seqs 42 out of 44
Neff 2.5
Searched_HMMs 29240
Date Tue Mar 26 15:48:08 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/001828.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1126-1130//hhsearch_pdb/001828hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3sp1_A Cysteinyl-tRNA syntheta 1.0 1 1 17.0 0.4 85 319-413 6-95 (501)
2 3iac_A Glucuronate isomerase; 1.0 1 1 16.7 0.5 100 545-669 257-366 (473)
3 1g12_A Peptidyl-Lys metalloend 1.0 1 1 16.2 -1.1 47 912-959 52-101 (167)
4 3tou_A Glutathione S-transfera 1.0 1 1 16.0 0.5 37 457-493 178-216 (226)
5 3lsz_A Glutathione S-transfera 1.0 1 1 15.9 0.9 35 456-490 187-223 (225)
6 4e98_A CUTA1 divalent ION tole 1.0 1 1 15.6 -0.0 26 186-213 52-83 (138)
7 3gsd_A Divalent-cation toleran 1.0 1 1 15.4 -0.0 26 186-213 37-68 (122)
8 4dix_A Plectin-related protein 1.0 1 1 15.3 0.1 45 561-615 96-140 (230)
9 2i5o_A DNA polymerase ETA; zin 1.0 1 1 15.0 2.0 21 281-302 15-36 (39)
10 1uku_A CUTA1, periplasmic diva 1.0 1 1 14.9 -0.0 22 188-211 19-45 (102)
No 1
>3sp1_A Cysteinyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, LYME disease; HET: AMP; 2.55A {Borrelia burgdorferi}
Probab=1.00 E-value=1 Score=16.98 Aligned_cols=85 Identities=14% Similarity=-0.025 Sum_probs=35.5
Q ss_pred CCHHHHHHHHHHCCCCCCCEEEEE-CCCCHHHHHHHHHHHHHH-HCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 121458999994398544034210-035315667653345655-137899998645888865234668889999999741
Q 001828 319 IGYAALLNTLLVGISSVDCIQIFS-LHGWVPLLAAALMPICEV-FGSSIPNASWTLSSGEEFSCYAVFSNAFTILVRLWR 396 (1008)
Q Consensus 319 i~~~pmLn~ll~GissvD~v~I~S-LhGlvP~lAa~LMPiCEv-FGS~~P~~s~t~~~gee~S~~~VFS~AFl~LlrLWk 396 (1008)
-.||-.|.+--.|-.... ++|+. |-+-.-+ +-|+-.| |=.|.|++.-.+-.| |+---..|=.+.|..+
T Consensus 6 ~~~~~~~~~~~~~~~~m~-l~lyntltr~ke~----f~p~~~v~~YvcgPTvYg~~HIG-----Har~~v~~Dvl~R~lr 75 (501)
T 3sp1_A 6 HHHMGTLEAQTQGPGSMI-LKLYNTRTKDFSE----LTNFENVKVYACGPTVYNYAHIG-----NFRTYIFGDLLIKTLR 75 (501)
T ss_dssp ----------------CC-EEEEETTTTEEEE----ECCCSCEEEEECCCBCSSCCCHH-----HHHHHHHHHHHHHHHH
T ss_pred CCCCCCEECCCCCCCCCE-EEEEECCCCCCCC----CCCCCCCEEEECCCCCCCCCCHH-----HHHHHHHHHHHHHHHH
T ss_conf 333332003444887772-7999878896003----41167451996889478972055-----5398999999999999
Q ss_pred CCCCCHHHC---CCCCCCCC
Q ss_conf 199950000---26887655
Q 001828 397 FHKPPLEQL---TVDMPLVA 413 (1008)
Q Consensus 397 F~~PPlE~~---~g~g~~vg 413 (1008)
+.--...|+ ++.|-..|
T Consensus 76 ~~Gy~V~~v~niTDvGhltG 95 (501)
T 3sp1_A 76 FLGYKVNYAMNITDIGHLTG 95 (501)
T ss_dssp HHTCCEEEEEEEBCSCCC--
T ss_pred HCCCCEEEEEEECCCCCCCC
T ss_conf 71996168866434333467
No 2
>3iac_A Glucuronate isomerase; IDP02065, structural genom center for structural genomics of infectious diseases, CSGI; 2.22A {Salmonella typhimurium} SCOP: c.1.9.0
Probab=1.00 E-value=1 Score=16.74 Aligned_cols=100 Identities=24% Similarity=0.257 Sum_probs=43.7
Q ss_pred HHHHHHHHHHCCC-CCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 5799998530269-889035644245643103034889988743221034333234489999993442244999999999
Q 001828 545 FVLDAALAACAHG-RLSPRELATGLKELSDCLPATLATVVSYFSAEVTRGLWKPAFMNGTDWPSPATNLSSIEQQIKKIL 623 (1008)
Q Consensus 545 fVldaaLTACaHG-rLS~ReL~TGLrDL~DFLPASlatIvSYFSAEVTRGiWKpv~MNGtDWPSPAAnL~~VE~eIK~IL 623 (1008)
--+|+++...-.| .+|+.|.. .|--+-|-. +..+-.+-=|-.-.+=| |.--+-..--+++=
T Consensus 257 ~e~~~if~k~l~G~~ls~~e~~-------~f~~~~l~~----la~~~~e~gwvmQlH~G-------a~Rn~n~~~f~~lG 318 (473)
T 3iac_A 257 AQLDAILGKRLAGETLSELEIA-------QFTTAVLVW----LGRQYAARGWVMQLHIG-------AIRNNNTRMFRLLG 318 (473)
T ss_dssp HHHHHHHHHHHTTCCCCHHHHH-------HHHHHHHHH----HHHHHHHHTCEEEEEEC-------EECCCCHHHHHHHC
T ss_pred HHHHHHHHHHHCCCCCCHHHHH-------HHHHHHHHH----HHHHHHHCCCEEEEECC-------CCCCCCHHHHHHHC
T ss_conf 9999999999769998999999-------999999999----99999877973465323-------02588889999839
Q ss_pred HHHCCCCCCCCCCCCCCCCCCCHHHHHH-------HE--EEEEEECCCHHHHHHH
Q ss_conf 8608776556779998755550056653-------12--6888733311359886
Q 001828 624 AATGVDVPTVAVGGNSPATLPLPLAALV-------SL--TITFKLDKASDRFLAL 669 (1008)
Q Consensus 624 AatGVdvP~~~~gg~sp~~LPLPlAAlv-------SL--TIT~KlDk~~e~~l~l 669 (1008)
+-+|-|+|.-. + .--+|+.|. .| ||-|-||..-.+.++-
T Consensus 319 ~D~G~D~~~d~-----~--~~~~L~~lLd~~~~~~~LpktILy~Lnp~~n~~lat 366 (473)
T 3iac_A 319 PDTGFDSIGDN-----N--ISWALSRLLDSMDVTNELPKTILYCLNPRDNEVLAT 366 (473)
T ss_dssp SSSSCCEECCC-----C--CHHHHHHHHHHHHTTTCCCEEEEEESSGGGHHHHHH
T ss_pred CCCCCCCCCCH-----H--HHHHHHHHHHHCCCCCCCCEEEEEECCCCCHHHHHH
T ss_conf 98998889988-----9--999999999857356999824677478342699999
No 3
>1g12_A Peptidyl-Lys metalloendopeptidase; zinc cordinate,metalloprotease, hydrolase; HET: MAN; 1.60A {Grifola frondosa} SCOP: d.92.1.12 PDB: 1ge5_A* 1ge6_A* 1ge7_A*
Probab=1.00 E-value=1 Score=16.18 Aligned_cols=47 Identities=28% Similarity=0.340 Sum_probs=21.2
Q ss_pred CCHHHHHHHHHHHHHHHCCCEEECCCCHH--HHHHHHHHHHH-HCCCCCCC
Q ss_conf 54137865799999850694230255112--66899865533-01344420
Q 001828 912 KRPTVLGTHLEFLASALDRKISVGCDCAT--WRAYVSGFVTL-IVGCTPTW 959 (1008)
Q Consensus 912 rR~rVlg~HleFlAs~LdGkIsLgCd~~t--WraYVsgfv~L-mV~~~P~W 959 (1008)
+|.+|.+ |++-+++.-+|.+.+.|+|.. |-|||..--.. ++-|..-|
T Consensus 52 ~~~~V~~-~f~~i~~~~~~~~~~~C~C~~~~~~Ay~~p~~~~~i~~Cp~f~ 101 (167)
T 1g12_A 52 RHSTVLQ-HYTDMNSNDFSSYSFDCTCTAAGTFAYVYPNRFGTVYLCGAFW 101 (167)
T ss_dssp HHHHHHH-HHHHHHTSCGGGCEEECCCCCSSCCEECCTTSTTEEEECGGGG
T ss_pred HHHHHHH-HHHHHHHCCCCCEEEEECCCCCCCEEEEECCCCCEEEECCCHH
T ss_conf 9999999-9999985668840586016899817788479997689898211
No 4
>3tou_A Glutathione S-transferase protein; GSH binding site, GSH; HET: GSH; 1.75A {Ralstonia solanacearum} PDB: 3tot_A*
Probab=1.00 E-value=1 Score=16.02 Aligned_cols=37 Identities=8% Similarity=0.020 Sum_probs=29.5
Q ss_pred CCCCCHHHHHHH--HHHHHHHHHHHHCCCCCCHHHHHHH
Q ss_conf 014430246888--4334689984304557970779999
Q 001828 457 FMDSFPKLKRWY--RQNEECIASTLTGLVHGTSVHLIVD 493 (1008)
Q Consensus 457 ~iDSFPKLk~WY--~Q~qaCiAStlSgl~~g~pVhqv~d 493 (1008)
..+.||+|+.|| ++.+..+..++....+.+|+.+.-+
T Consensus 178 ~~~~~p~l~~w~~r~~~~p~~~~~~~~~~~~~~~~~~~~ 216 (226)
T 3tou_A 178 WREQHANLAAFYTRIEKRPSFLETQPQAENLYFQSHHHH 216 (226)
T ss_dssp HHHHCHHHHHHHHHHHTSHHHHTTCGGGGGCGGGCC---
T ss_pred HHHCCHHHHHHHHHHHCCHHHHHHCCCHHHHHHHHCCCC
T ss_conf 011196899999998649899973862443445302443
No 5
>3lsz_A Glutathione S-transferase; xenobiotic, biodegradative metabolism, PSI2, NYSGXRC, structural genomics, protein structure initiative; HET: GSH; 1.70A {Rhodobacter sphaeroides}
Probab=1.00 E-value=1 Score=15.94 Aligned_cols=35 Identities=14% Similarity=0.331 Sum_probs=26.6
Q ss_pred CCCCCCHHHHHHH--HHHHHHHHHHHHCCCCCCHHHH
Q ss_conf 1014430246888--4334689984304557970779
Q 001828 456 IFMDSFPKLKRWY--RQNEECIASTLTGLVHGTSVHL 490 (1008)
Q Consensus 456 v~iDSFPKLk~WY--~Q~qaCiAStlSgl~~g~pVhq 490 (1008)
...+.||+|+.|| ++.+..+..++.....++|-|+
T Consensus 187 ~~~~~~p~l~~w~~~~~~~p~~~~~~~~~~~~~~~~~ 223 (225)
T 3lsz_A 187 ALLEPFPAVAAWLDRCQSRPAFRLMMERRAAEGHHHH 223 (225)
T ss_dssp TTTTTCHHHHHHHHHHHTSHHHHHHHHHHHHCCCCCC
T ss_pred CCCCCCHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCC
T ss_conf 8700091899999999759899999863424677656
No 6
>4e98_A CUTA1 divalent ION tolerance protein; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, signaling protein; 2.00A {Cryptosporidium parvum}
Probab=1.00 E-value=1 Score=15.60 Aligned_cols=26 Identities=27% Similarity=0.667 Sum_probs=18.8
Q ss_pred HHHHHHH----HHHHHCCCC--CCCEECCCCCCC
Q ss_conf 1378999----986311122--342002452136
Q 001828 186 MRHLIVE----ACIARNLLD--TSAYLWPGYVNA 213 (1008)
Q Consensus 186 MrHLIVE----ACIaRnLlD--tSaY~WpGYv~~ 213 (1008)
+-+.+|| ||+ |++. +|.|.|-|-+..
T Consensus 52 IA~~LVe~rLAACV--nI~p~i~SiY~WeG~Ie~ 83 (138)
T 4e98_A 52 IAKTLVDEELCACV--SIIPSVRSIYKFKGQVHD 83 (138)
T ss_dssp HHHHHHHTTSCSEE--EEEEEEEEEEEETTEEEE
T ss_pred HHHHHHHCCCEEEE--EECCCEEEEEEECCEEEE
T ss_conf 99999977924699--815992199996892628
No 7
>3gsd_A Divalent-cation tolerance protein CUTA; IDP00456, metal-BIN structural genomics, center for structural genomics of INFE diseases, csgid; HET: EPE; 2.05A {Yersinia pestis CO92} SCOP: d.58.5.2
Probab=1.00 E-value=1 Score=15.44 Aligned_cols=26 Identities=35% Similarity=0.778 Sum_probs=19.0
Q ss_pred HHHHHHH----HHHHHCCCC--CCCEECCCCCCC
Q ss_conf 1378999----986311122--342002452136
Q 001828 186 MRHLIVE----ACIARNLLD--TSAYLWPGYVNA 213 (1008)
Q Consensus 186 MrHLIVE----ACIaRnLlD--tSaY~WpGYv~~ 213 (1008)
+-+.+|| ||+ |++. +|.|.|-|-+..
T Consensus 37 iA~~Lve~rLAACV--ni~p~i~S~Y~W~G~ie~ 68 (122)
T 3gsd_A 37 LAAQVLGEKLAACV--TLLPGATSLYYWEGKLEQ 68 (122)
T ss_dssp HHHHHHHTTSCSEE--EEEEEEEEEEEETTEEEE
T ss_pred HHHHHHHCCCEEEE--EECCCEEEEEEECCEEEE
T ss_conf 99999978926799--825994699998999867
No 8
>4dix_A Plectin-related protein; PH domain, IG domain, malonate ION, beta sheet, PH superfold cytosolic, protein binding; 1.70A {Arabidopsis thaliana}
Probab=1.00 E-value=1 Score=15.27 Aligned_cols=45 Identities=20% Similarity=0.259 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHH
Q ss_conf 0356442456431030348899887432210343332344899999934422449
Q 001828 561 PRELATGLKELSDCLPATLATVVSYFSAEVTRGLWKPAFMNGTDWPSPATNLSSI 615 (1008)
Q Consensus 561 ~ReL~TGLrDL~DFLPASlatIvSYFSAEVTRGiWKpv~MNGtDWPSPAAnL~~V 615 (1008)
|-|-+.||-+-+|- .++-=.+|-.- --.-|||.||+|++.....|
T Consensus 96 pId~a~GL~~yVEa-------L~rk~~tEFNV---vv~q~nG~d~~s~sihvl~v 140 (230)
T 4dix_A 96 KIDPAAGLGSYVEA-------LVRKHDVDFNV---VVTQMSGEDHTSESIHLFHV 140 (230)
T ss_dssp EBBCCTTHHHHHHH-------HHTTSEEEEEE---EEEEETTEECCCCCEEEEEE
T ss_pred CCCCCCHHHHHHHH-------HHHCCCCCEEE---EEEEECCCCCCCCEEEEEEE
T ss_conf 87777226789999-------86547972789---99987576576631799975
No 9
>2i5o_A DNA polymerase ETA; zinc finger, DNA polymerase,POL ETA, UBZ, ubiquitin-binding zinc finger, translesion synthesis, ubiquitin-binding domain; HET: DNA; NMR {Homo sapiens}
Probab=1.00 E-value=1 Score=14.99 Aligned_cols=21 Identities=29% Similarity=0.746 Sum_probs=0.0
Q ss_pred CCCCCCCCCCHHHHH-HHHHHHH
Q ss_conf 145433443223579-9999984
Q 001828 281 CGASLVRGWSVQENT-ILFIIKL 302 (1008)
Q Consensus 281 CGASL~RGWniQEH~-v~~vvkL 302 (1008)
||..+-- |..|||. -||..+|
T Consensus 15 C~~~i~~-~~~~EH~D~H~A~~L 36 (39)
T 2i5o_A 15 CGSLVPV-WDMPEHMDYHFALEL 36 (39)
T ss_dssp TCCEEEG-GGHHHHHHHHHHHHH
T ss_pred CCCCCCC-CCCCCHHHHHHHHHH
T ss_conf 4683775-321320007999987
No 10
>1uku_A CUTA1, periplasmic divalent cation tolerance protein CUT; copper tolerance, structural genomics, metal binding P; 1.45A {Pyrococcus horikoshii} SCOP: d.58.5.2 PDB: 1umj_A 1v99_A* 1v9b_A 1j2v_A 2e66_A
Probab=1.00 E-value=1 Score=14.89 Aligned_cols=22 Identities=32% Similarity=0.810 Sum_probs=0.0
Q ss_pred HHHHH----HHHHHCCCC-CCCEECCCCC
Q ss_conf 78999----986311122-3420024521
Q 001828 188 HLIVE----ACIARNLLD-TSAYLWPGYV 211 (1008)
Q Consensus 188 HLIVE----ACIaRnLlD-tSaY~WpGYv 211 (1008)
+.+|| ||+ |++. +|.|.|-|-+
T Consensus 19 ~~Lve~rLAACv--ni~p~~S~Y~W~G~i 45 (102)
T 1uku_A 19 KTLLKERLIACA--NLREHRAFYWWEGKI 45 (102)
T ss_dssp HHHHHTTSCSEE--EEEEEEEEEEETTEE
T ss_pred HHHHHCCEEEEE--EECCCCEEEEECCEE
T ss_conf 999977938999--843996489988874
Done!