Query 001828
Match_columns 1008
No_of_seqs 42 out of 44
Neff 2.5
Searched_HMMs 13730
Date Tue Mar 26 15:53:42 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/001828.a3m -d /local_scratch/syshi/scop70.hhm -v 0 -o /local_scratch/syshi/H1_1126-1130//hhsearch_scop/001828hhsearch_scop
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2cvda1 a.45.1.1 (A:76-199) Cl 13.2 29 0.0021 11.7 2.3 58 402-479 56-116 (124)
2 d1v54e_ a.118.11.1 (E:) Cytoch 11.4 32 0.0023 11.4 4.8 69 528-632 14-98 (105)
3 d2c4ja1 a.45.1.1 (A:86-218) Cl 11.4 32 0.0024 11.3 2.4 60 402-481 53-115 (133)
4 d3gtub1 a.45.1.1 (B:85-224) Cl 7.0 48 0.0035 10.2 2.5 28 454-481 90-119 (140)
5 d1m0ua1 a.45.1.1 (A:123-249) C 6.2 54 0.0039 9.9 1.3 14 455-468 93-106 (127)
6 d1a6qa1 a.159.1.1 (A:297-368) 5.6 61 0.0045 9.6 1.6 18 620-639 38-55 (72)
7 d1tu7a1 a.45.1.1 (A:78-208) Cl 5.3 66 0.0048 9.4 2.3 27 454-480 88-116 (131)
8 d1b48a1 a.45.1.1 (A:80-222) Cl 5.2 66 0.0048 9.3 2.6 35 454-488 92-129 (143)
9 d1v31a_ a.42.1.1 (A:) Hypothet 4.9 24 0.0018 12.2 -2.5 22 232-253 7-28 (93)
10 d2p9ba1 b.92.1.10 (A:9-70,A:39 4.8 74 0.0054 9.0 0.7 38 176-216 32-70 (118)
No 1
>d2cvda1 a.45.1.1 (A:76-199) Class sigma GST {Human (Homo sapiens) [TaxId: 9606]}
Probab=13.17 E-value=29 Score=11.70 Aligned_cols=58 Identities=17% Similarity=0.162 Sum_probs=32.3
Q ss_pred HHH-CCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCHHHHHHH--HHHHHHHHHH
Q ss_conf 000-0268876557888013333115433456999400100023455544678851014430246888--4334689984
Q 001828 402 LEQ-LTVDMPLVASQLSPEYLLLVRNSKLASFGTSPKDQMKSKRFSKNIKFSTDPIFMDSFPKLKRWY--RQNEECIAST 478 (1008)
Q Consensus 402 lE~-~~g~g~~vgs~lt~eyLLllRN~~~~s~~~~~~~~~~~~~~~~~~~~s~~Pv~iDSFPKLk~WY--~Q~qaCiASt 478 (1008)
+|. +.+.+=.+|.++|.-=+.+..-- +.. ...+|..++.||+|+.|| .++..-|+..
T Consensus 56 le~~L~~~~yl~G~~~T~aDi~l~~~l----------~~~----------~~~~~~~~~~~P~L~~~~~rv~~~P~vk~y 115 (124)
T d2cvda1 56 LDTYLGGREWLIGMSVTWADFYWEICS----------TTL----------LVFKPDLLDNHPRLVTLRKKVQAIPAVANW 115 (124)
T ss_dssp HHHHHTTCSSSSTTSCCHHHHHHHHHH----------HHH----------HHHCTTTTTTCHHHHHHHHHHHTSHHHHHH
T ss_pred HHHHHCCCCEEECCCCCHHHHHHHHHH----------HHH----------HHHHHHHHHHHHHHHHHHHHHHHCHHHHHH
T ss_conf 999817798010785719899999999----------999----------986326553069999999999909999999
Q ss_pred H
Q ss_conf 3
Q 001828 479 L 479 (1008)
Q Consensus 479 l 479 (1008)
+
T Consensus 116 l 116 (124)
T d2cvda1 116 I 116 (124)
T ss_dssp H
T ss_pred H
T ss_conf 9
No 2
>d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]}
Probab=11.45 E-value=32 Score=11.36 Aligned_cols=69 Identities=28% Similarity=0.536 Sum_probs=43.4
Q ss_pred CCCCCCCCHHHHHH-----------HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHH-----HHHHC
Q ss_conf 21456760357852-----------224579999853026988903564424564310303488998874-----32210
Q 001828 528 VSIKLKVPAWDILE-----------ATPFVLDAALAACAHGRLSPRELATGLKELSDCLPATLATVVSYF-----SAEVT 591 (1008)
Q Consensus 528 ~~~rp~lPAWdiLE-----------AvPfVldaaLTACaHGrLS~ReL~TGLrDL~DFLPASlatIvSYF-----SAEVT 591 (1008)
-..||.+-.||+-. --|=|++|||-|| |-+-|| |+-|-+| -.+..
T Consensus 14 ~F~~~~iD~we~rrgmN~l~~~DlVPeP~Ii~aALrAc--------------RRvND~-----alAVR~lE~vK~K~~~~ 74 (105)
T d1v54e_ 14 YFNKPDIDAWELRKGMNTLVGYDLVPEPKIIDAALRAC--------------RRLNDF-----ASAVRILEVVKDKAGPH 74 (105)
T ss_dssp HHTCTTCCHHHHHHHHHHHTTSSBCCCHHHHHHHHHHH--------------HHTTCH-----HHHHHHHHHHHHHTTTC
T ss_pred HHCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH--------------HHHHHH-----HHHHHHHHHHHHHHCCC
T ss_conf 84675740899999999985156689909999999999--------------884007-----99999999999873470
Q ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 34333234489999993442244999999999860877655
Q 001828 592 RGLWKPAFMNGTDWPSPATNLSSIEQQIKKILAATGVDVPT 632 (1008)
Q Consensus 592 RGiWKpv~MNGtDWPSPAAnL~~VE~eIK~ILAatGVdvP~ 632 (1008)
.++|. -+-+|||..+..-|++-|-
T Consensus 75 k~~y~-----------------yilqelkptl~ELGI~t~E 98 (105)
T d1v54e_ 75 KEIYP-----------------YVIQELRPTLNELGISTPE 98 (105)
T ss_dssp TTHHH-----------------HHHHHHHHHHHHHTCCCTT
T ss_pred HHHHH-----------------HHHHHHHHHHHHHCCCCHH
T ss_conf 88999-----------------9999986699995899888
No 3
>d2c4ja1 a.45.1.1 (A:86-218) Class mu GST {Human (Homo sapiens) [TaxId: 9606]}
Probab=11.37 E-value=32 Score=11.35 Aligned_cols=60 Identities=17% Similarity=0.237 Sum_probs=34.1
Q ss_pred HHH-CCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCHHHHHHH--HHHHHHHHHH
Q ss_conf 000-0268876557888013333115433456999400100023455544678851014430246888--4334689984
Q 001828 402 LEQ-LTVDMPLVASQLSPEYLLLVRNSKLASFGTSPKDQMKSKRFSKNIKFSTDPIFMDSFPKLKRWY--RQNEECIAST 478 (1008)
Q Consensus 402 lE~-~~g~g~~vgs~lt~eyLLllRN~~~~s~~~~~~~~~~~~~~~~~~~~s~~Pv~iDSFPKLk~WY--~Q~qaCiASt 478 (1008)
+|. +.+.+=-+|.++|.-=+.+...-. ... -..|-.+|.||+|+.|| .++..-|+.-
T Consensus 53 le~~L~~~~~l~G~~~T~aD~~~~~~l~----------~~~----------~~~~~~l~~~P~L~~~~~rv~~~P~ik~y 112 (133)
T d2c4ja1 53 YSQFLGKQPWFLGDKITFVDFIAYDVLE----------RNQ----------VFEPSCLDAFPNLKDFISRFEGLEKISAY 112 (133)
T ss_dssp HHHHHTTCSBTTBSSCCHHHHHHHHHHH----------HHH----------HHSTTTTTTCHHHHHHHHHHHHSHHHHHH
T ss_pred HHHHHCCCCEEECCCCCHHHHHHHHHHH----------HHH----------HHCCHHHHHCCHHHHHHHHHHHCHHHHHH
T ss_conf 9999577980246986677999999999----------999----------86901656594599999999829899999
Q ss_pred HHC
Q ss_conf 304
Q 001828 479 LTG 481 (1008)
Q Consensus 479 lSg 481 (1008)
+..
T Consensus 113 l~s 115 (133)
T d2c4ja1 113 MKS 115 (133)
T ss_dssp HHS
T ss_pred HHC
T ss_conf 838
No 4
>d3gtub1 a.45.1.1 (B:85-224) Class mu GST {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.04 E-value=48 Score=10.24 Aligned_cols=28 Identities=39% Similarity=0.580 Sum_probs=20.6
Q ss_pred CCCCCCCCHHHHHHH--HHHHHHHHHHHHC
Q ss_conf 851014430246888--4334689984304
Q 001828 454 DPIFMDSFPKLKRWY--RQNEECIASTLTG 481 (1008)
Q Consensus 454 ~Pv~iDSFPKLk~WY--~Q~qaCiAStlSg 481 (1008)
.|...+.||+|+.|| .++..-|+.-+..
T Consensus 90 ~~~~~~~~P~L~~~~~rv~~~P~Ik~yl~s 119 (140)
T d3gtub1 90 DPKCLDEFPNLKAFMCRFEALEKIAAYLQS 119 (140)
T ss_dssp CGGGGTTCHHHHHHHHHHHTSHHHHHHHHC
T ss_pred CCCCHHCCHHHHHHHHHHHCCHHHHHHHHC
T ss_conf 920000075899999999839889999816
No 5
>d1m0ua1 a.45.1.1 (A:123-249) Class sigma GST {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=6.18 E-value=54 Score=9.93 Aligned_cols=14 Identities=14% Similarity=0.418 Sum_probs=10.6
Q ss_pred CCCCCCCHHHHHHH
Q ss_conf 51014430246888
Q 001828 455 PIFMDSFPKLKRWY 468 (1008)
Q Consensus 455 Pv~iDSFPKLk~WY 468 (1008)
|-..|.||+|++||
T Consensus 93 ~~~~~~~P~L~~~~ 106 (127)
T d1m0ua1 93 RDLLEPYPALRGVV 106 (127)
T ss_dssp SCTTTTCHHHHHHH
T ss_pred CCHHHCCHHHHHHH
T ss_conf 62644485899999
No 6
>d1a6qa1 a.159.1.1 (A:297-368) Protein serine/threonine phosphatase 2C, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.57 E-value=61 Score=9.55 Aligned_cols=18 Identities=28% Similarity=0.645 Sum_probs=10.6
Q ss_pred HHHHHHHCCCCCCCCCCCCC
Q ss_conf 99998608776556779998
Q 001828 620 KKILAATGVDVPTVAVGGNS 639 (1008)
Q Consensus 620 K~ILAatGVdvP~~~~gg~s 639 (1008)
-+.|++. |||+++|||+-
T Consensus 38 m~~L~~e--~Ip~LPPGGGL 55 (72)
T d1a6qa1 38 MRTLASE--NIPSLPPGGEL 55 (72)
T ss_dssp HHHHHHT--TCSSCCTTTGG
T ss_pred HHHHHHC--CCCCCCCCCCH
T ss_conf 9999866--89999999659
No 7
>d1tu7a1 a.45.1.1 (A:78-208) Class pi GST {Onchocerca volvulus [TaxId: 6282]}
Probab=5.27 E-value=66 Score=9.36 Aligned_cols=27 Identities=26% Similarity=0.423 Sum_probs=18.4
Q ss_pred CCCCCCCCHHHHHHH--HHHHHHHHHHHH
Q ss_conf 851014430246888--433468998430
Q 001828 454 DPIFMDSFPKLKRWY--RQNEECIASTLT 480 (1008)
Q Consensus 454 ~Pv~iDSFPKLk~WY--~Q~qaCiAStlS 480 (1008)
.|-.+|.||+|+.|| ..+..-|+.-+.
T Consensus 88 ~~~~~~~~P~L~~~~~rv~~~P~Ik~yl~ 116 (131)
T d1tu7a1 88 DPHCLDKFPLLKVFHQRMKDRPKLKEYCE 116 (131)
T ss_dssp CTTTTTTCHHHHHHHHHHHTSHHHHHHHH
T ss_pred CHHHHHCCHHHHHHHHHHHCCHHHHHHHH
T ss_conf 91442104799999999990988999981
No 8
>d1b48a1 a.45.1.1 (A:80-222) Class alpha GST {Mouse (Mus musculus), (a1-4) [TaxId: 10090]}
Probab=5.24 E-value=66 Score=9.34 Aligned_cols=35 Identities=20% Similarity=0.245 Sum_probs=24.9
Q ss_pred CCCCCCCCHHHHHHH--HHHHHHHHHHHH-CCCCCCHH
Q ss_conf 851014430246888--433468998430-45579707
Q 001828 454 DPIFMDSFPKLKRWY--RQNEECIASTLT-GLVHGTSV 488 (1008)
Q Consensus 454 ~Pv~iDSFPKLk~WY--~Q~qaCiAStlS-gl~~g~pV 488 (1008)
+|-.++.||+|+.|| ..+...|+..+. +--+..|.
T Consensus 92 ~~~~~~~~P~L~~~~~rv~~~P~ik~yl~~~~~~k~p~ 129 (143)
T d1b48a1 92 SAPVLSDFPLLQAFKTRISNIPTIKKFLQPGSQRKPPP 129 (143)
T ss_dssp CTTGGGGCHHHHHHHHHHHTSHHHHHHHSTTSSCCCCC
T ss_pred CCCHHHHCHHHHHHHHHHHHCHHHHHHHCCCCCCCCCC
T ss_conf 91033357779999999982989999876776458999
No 9
>d1v31a_ a.42.1.1 (A:) Hypothetical protein AT5G14170 (rafl11-05-p19) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=4.85 E-value=24 Score=12.16 Aligned_cols=22 Identities=14% Similarity=0.188 Sum_probs=10.5
Q ss_pred CCCCCCCCCHHHHHHHHCCCCC
Q ss_conf 1145899993344433147898
Q 001828 232 SLMKGSPLTPSLTNALVVTPAS 253 (1008)
Q Consensus 232 ~fM~GspLt~~L~naLv~tPAs 253 (1008)
-|.+--.|++.|.+.|-..+.|
T Consensus 7 G~~~~~~lS~~La~~lg~~~~s 28 (93)
T d1v31a_ 7 GVPEKFKLSTALMDVLGIEVET 28 (93)
T ss_dssp SSCCCEECCHHHHHHSCCSEEC
T ss_pred CCCCCCCCCHHHHHHHCCCCCC
T ss_conf 9868735899999988768676
No 10
>d2p9ba1 b.92.1.10 (A:9-70,A:395-450) Uncharacterized protein BL1453 {Bifidobacterium longum [TaxId: 216816]}
Probab=4.81 E-value=74 Score=9.04 Aligned_cols=38 Identities=5% Similarity=-0.072 Sum_probs=22.5
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHCCCCCC-CEECCCCCCCCCC
Q ss_conf 8875444575137899998631112234-2002452136788
Q 001828 176 NGLATSCLGNMRHLIVEACIARNLLDTS-AYLWPGYVNASDS 216 (1008)
Q Consensus 176 ~d~~~~~~GNMrHLIVEACIaRnLlDtS-aY~WpGYv~~~~~ 216 (1008)
+|..+..+|.....-.. -.-..+|.+ .|.-||.++. |.
T Consensus 32 ~dG~I~~vg~~~~~~~~--~~~~viD~~Gk~v~PGlid~-H~ 70 (118)
T d2p9ba1 32 ADGRIEQVAPSIETSIP--AEYHYLDGTGKIVMLEVGKS-AD 70 (118)
T ss_dssp TTSBEEEEEEGGGCCCC--TTCEEEECTTCEEECCTTSB-CC
T ss_pred CCCEEEEECCCCCCCCC--CEEEEEECCCCEEEEEECCE-EE
T ss_conf 59859997233001344--20699955686988001030-48
Done!