BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 001830
(1008 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3HN8|A Chain A, Crystal Structure Of Synaptotagmin
pdb|3HN8|B Chain B, Crystal Structure Of Synaptotagmin
pdb|3HN8|C Chain C, Crystal Structure Of Synaptotagmin
Length = 296
Score = 63.5 bits (153), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 88/326 (26%), Positives = 129/326 (39%), Gaps = 77/326 (23%)
Query: 271 MRYLF------VRVVKARDLPSKDVTGSLDPFVEVKV---GNYKGITKYYEKKQNPEWNE 321
+RYL+ VR+++A DLP+KD G DP+V++ + K TK + K NP +NE
Sbjct: 14 LRYLYGSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNE 73
Query: 322 VFAFS---RERIQSSVLEVAXXXXXXXXXXYVGLVRFDLNEVPTRVPPDSPLAAEWYRLE 378
F FS E Q + +G V D PPD PL W +
Sbjct: 74 TFQFSVPLAELAQRKLHFSVYDFDRFSRHDLIGQVVLDNLLELAEQPPDRPL---WRDIL 130
Query: 379 DRKGEKKK-GELMLAVWYGTQADEAFPDAWHSDAVTPTDSPSNVSTHIRSKVYHSPRLWY 437
+ EK GEL ++ Y P
Sbjct: 131 EGGSEKADLGELNFSLCY------------------------------------LPTAGL 154
Query: 438 VRVNVMEAQDLVISDKNRFPDAYVKVQI---GNQVLKTK-SVQSRTLNPVWNEDMMF-VA 492
+ V +++A +L D F D YVK + G ++ K K S++ TLNP +NE ++F VA
Sbjct: 155 LTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFDVA 214
Query: 493 SEPFED-HLILTVED-------------RVGPNKDETIGKVVIPLHSVEKRADDRIVHTR 538
E E+ L + V D RVGP + G+ H E A+ R
Sbjct: 215 PESVENVGLSIAVVDYDCIGHNEVIGVCRVGPEAADPHGRE----HWAEMLANPRKPVEH 270
Query: 539 WFNL--EKSVSAALDGDNAKKDKFSS 562
W L EK++S+ G +K +S
Sbjct: 271 WHQLVEEKTLSSFTKGGKGLSEKENS 296
Score = 50.1 bits (118), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 67/252 (26%), Positives = 111/252 (44%), Gaps = 57/252 (22%)
Query: 440 VNVMEAQDLVISDKNRFPDAYVKVQI---GNQVLKTKSVQSRTLNPVWNEDMMFVA--SE 494
V +++A DL D N F D YVK+ + + +TK V +TLNP++NE F +E
Sbjct: 25 VRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTK-VHRKTLNPIFNETFQFSVPLAE 83
Query: 495 PFEDHLILTVEDRVGPNKDETIGKVVIP-LHSVEKRADDRIVHTRWFNLEKSVSAALDGD 553
+ L +V D ++ + IG+VV+ L + ++ DR + W ++ L+G
Sbjct: 84 LAQRKLHFSVYDFDRFSRHDLIGQVVLDNLLELAEQPPDRPL---WRDI-------LEGG 133
Query: 554 NAKKDKFSSRLHLRVCLDGGYHVLDESTHYSSDLRPTAKQLWKPSIGVLELGILNADGLH 613
+ K D L+ +C + P+ G+L + I+ A L
Sbjct: 134 SEKAD--LGELNFSLC-------------------------YLPTAGLLTVTIIKASNLK 166
Query: 614 PMKTRDGRGTADTYCVAKY---GHKWVRTRTII--NSLSAKYNEQYTWEVYDPATV---- 664
M D G +D Y A G + + +T I N+L+ YNE ++V P +V
Sbjct: 167 AM---DLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFDVA-PESVENVG 222
Query: 665 LTVGVFDNSHIG 676
L++ V D IG
Sbjct: 223 LSIAVVDYDCIG 234
Score = 38.9 bits (89), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 49/91 (53%), Gaps = 5/91 (5%)
Query: 5 KLGVEVVSAYELMPKDGQGSSNAFVELHF---DGQKFRTTTKEKDLTPVWNESFYFNISD 61
+L V ++ A +L KD G S+ +V+++ +KF+T K L P++NE+F F++
Sbjct: 22 QLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSVPL 81
Query: 62 PHNLSNLALDAYVYNHNRTTNSKSFLGKVRL 92
L+ L VY+ +R + +G+V L
Sbjct: 82 AE-LAQRKLHFSVYDFDRFSR-HDLIGQVVL 110
Score = 33.1 bits (74), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 33/138 (23%), Positives = 65/138 (47%), Gaps = 20/138 (14%)
Query: 6 LGVEVVSAYELMPKDGQGSSNAFVE--LHFDGQKFR---TTTKEKDLTPVWNESFYFNIS 60
L V ++ A L D G S+ +V+ L +G++ + T+ K+ L P +NE+ F+++
Sbjct: 155 LTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFDVA 214
Query: 61 DPHNLSNLALDAYVYNHNRTTNSKSFLGKVRLTGTSFVPYSD---AVVLHYP-------- 109
P ++ N+ L V +++ +G R+ + P+ A +L P
Sbjct: 215 -PESVENVGLSIAVVDYD-CIGHNEVIGVCRVGPEAADPHGREHWAEMLANPRKPVEHWH 272
Query: 110 --LEKRSIFSRVKGELGL 125
+E++++ S KG GL
Sbjct: 273 QLVEEKTLSSFTKGGKGL 290
>pdb|1DQV|A Chain A, Crystal Structure Of Synaptotagmin Iii C2aC2B
Length = 296
Score = 63.5 bits (153), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 88/326 (26%), Positives = 129/326 (39%), Gaps = 77/326 (23%)
Query: 271 MRYLF------VRVVKARDLPSKDVTGSLDPFVEVKV---GNYKGITKYYEKKQNPEWNE 321
+RYL+ VR+++A DLP+KD G DP+V++ + K TK + K NP +NE
Sbjct: 13 LRYLYGSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNE 72
Query: 322 VFAFS---RERIQSSVLEVAXXXXXXXXXXYVGLVRFDLNEVPTRVPPDSPLAAEWYRLE 378
F FS E Q + +G V D PPD PL W +
Sbjct: 73 TFQFSVPLAELAQRKLHFSVYDFDRFSRHDLIGQVVLDNLLELAEQPPDRPL---WRDIL 129
Query: 379 DRKGEKKK-GELMLAVWYGTQADEAFPDAWHSDAVTPTDSPSNVSTHIRSKVYHSPRLWY 437
+ EK GEL ++ Y P
Sbjct: 130 EGGSEKADLGELNFSLCY------------------------------------LPTAGL 153
Query: 438 VRVNVMEAQDLVISDKNRFPDAYVKVQI---GNQVLKTK-SVQSRTLNPVWNEDMMF-VA 492
+ V +++A +L D F D YVK + G ++ K K S++ TLNP +NE ++F VA
Sbjct: 154 LTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFDVA 213
Query: 493 SEPFED-HLILTVED-------------RVGPNKDETIGKVVIPLHSVEKRADDRIVHTR 538
E E+ L + V D RVGP + G+ H E A+ R
Sbjct: 214 PESVENVGLSIAVVDYDCIGHNEVIGVCRVGPEAADPHGRE----HWAEMLANPRKPVEH 269
Query: 539 WFNL--EKSVSAALDGDNAKKDKFSS 562
W L EK++S+ G +K +S
Sbjct: 270 WHQLVEEKTLSSFTKGGKGLSEKENS 295
Score = 50.1 bits (118), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 67/252 (26%), Positives = 111/252 (44%), Gaps = 57/252 (22%)
Query: 440 VNVMEAQDLVISDKNRFPDAYVKVQI---GNQVLKTKSVQSRTLNPVWNEDMMFVA--SE 494
V +++A DL D N F D YVK+ + + +TK V +TLNP++NE F +E
Sbjct: 24 VRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTK-VHRKTLNPIFNETFQFSVPLAE 82
Query: 495 PFEDHLILTVEDRVGPNKDETIGKVVIP-LHSVEKRADDRIVHTRWFNLEKSVSAALDGD 553
+ L +V D ++ + IG+VV+ L + ++ DR + W ++ L+G
Sbjct: 83 LAQRKLHFSVYDFDRFSRHDLIGQVVLDNLLELAEQPPDRPL---WRDI-------LEGG 132
Query: 554 NAKKDKFSSRLHLRVCLDGGYHVLDESTHYSSDLRPTAKQLWKPSIGVLELGILNADGLH 613
+ K D L+ +C + P+ G+L + I+ A L
Sbjct: 133 SEKAD--LGELNFSLC-------------------------YLPTAGLLTVTIIKASNLK 165
Query: 614 PMKTRDGRGTADTYCVAKY---GHKWVRTRTII--NSLSAKYNEQYTWEVYDPATV---- 664
M D G +D Y A G + + +T I N+L+ YNE ++V P +V
Sbjct: 166 AM---DLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFDVA-PESVENVG 221
Query: 665 LTVGVFDNSHIG 676
L++ V D IG
Sbjct: 222 LSIAVVDYDCIG 233
Score = 39.3 bits (90), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 49/91 (53%), Gaps = 5/91 (5%)
Query: 5 KLGVEVVSAYELMPKDGQGSSNAFVELHF---DGQKFRTTTKEKDLTPVWNESFYFNISD 61
+L V ++ A +L KD G S+ +V+++ +KF+T K L P++NE+F F++
Sbjct: 21 QLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSVPL 80
Query: 62 PHNLSNLALDAYVYNHNRTTNSKSFLGKVRL 92
L+ L VY+ +R + +G+V L
Sbjct: 81 AE-LAQRKLHFSVYDFDRFSR-HDLIGQVVL 109
Score = 33.1 bits (74), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 33/138 (23%), Positives = 65/138 (47%), Gaps = 20/138 (14%)
Query: 6 LGVEVVSAYELMPKDGQGSSNAFVE--LHFDGQKFR---TTTKEKDLTPVWNESFYFNIS 60
L V ++ A L D G S+ +V+ L +G++ + T+ K+ L P +NE+ F+++
Sbjct: 154 LTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFDVA 213
Query: 61 DPHNLSNLALDAYVYNHNRTTNSKSFLGKVRLTGTSFVPYSD---AVVLHYP-------- 109
P ++ N+ L V +++ +G R+ + P+ A +L P
Sbjct: 214 -PESVENVGLSIAVVDYD-CIGHNEVIGVCRVGPEAADPHGREHWAEMLANPRKPVEHWH 271
Query: 110 --LEKRSIFSRVKGELGL 125
+E++++ S KG GL
Sbjct: 272 QLVEEKTLSSFTKGGKGL 289
>pdb|3JZY|A Chain A, Crystal Structure Of Human Intersectin 2 C2 Domain
Length = 510
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/138 (25%), Positives = 65/138 (47%), Gaps = 6/138 (4%)
Query: 406 AWHSDAVTPTDSPSNVSTHIRSKVYH-----SPRLWYVRVNVMEAQDLVISDKNRFPDAY 460
AW ++ + R K Y + + + V+V+EA +L N + Y
Sbjct: 352 AWVQKIKAASEQYIDTEKKQREKAYQARSQKTSGIGRLMVHVIEATELKACKPNGKSNPY 411
Query: 461 VKVQIGNQVLKTKSVQSRTLNPVWNEDMMFVASEPFEDHLILTVEDRVGPNKDETIGKVV 520
++ +G+Q T+++Q TLNP WN + F + ++D L LT+ DR + D+ +G+
Sbjct: 412 CEISMGSQSYTTRTIQD-TLNPKWNFNCQFFIKDLYQDVLCLTLFDRDQFSPDDFLGRTE 470
Query: 521 IPLHSVEKRADDRIVHTR 538
IP+ + + + TR
Sbjct: 471 IPVAKIRTEQESKGPMTR 488
Score = 37.7 bits (86), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 27/57 (47%)
Query: 5 KLGVEVVSAYELMPKDGQGSSNAFVELHFDGQKFRTTTKEKDLTPVWNESFYFNISD 61
+L V V+ A EL G SN + E+ Q + T T + L P WN + F I D
Sbjct: 388 RLMVHVIEATELKACKPNGKSNPYCEISMGSQSYTTRTIQDTLNPKWNFNCQFFIKD 444
Score = 34.3 bits (77), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 26/47 (55%)
Query: 274 LFVRVVKARDLPSKDVTGSLDPFVEVKVGNYKGITKYYEKKQNPEWN 320
L V V++A +L + G +P+ E+ +G+ T+ + NP+WN
Sbjct: 389 LMVHVIEATELKACKPNGKSNPYCEISMGSQSYTTRTIQDTLNPKWN 435
Score = 33.5 bits (75), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 49/114 (42%), Gaps = 8/114 (7%)
Query: 599 IGVLELGILNADGLHPMKTRDGRGTADTYCVAKYGHKWVRTRTIINSLSAKYNEQYTWEV 658
IG L + ++ A L K G ++ YC G + TRTI ++L+ K+N + +
Sbjct: 386 IGRLMVHVIEATELKACKPN---GKSNPYCEISMGSQSYTTRTIQDTLNPKWNFNCQFFI 442
Query: 659 YDP-ATVLTVGVFDNSHIGGSS--GSKDVKIGKVRIRISTLE--TGRVYTHSYP 707
D VL + +FD G ++ + K+R + T R+ H P
Sbjct: 443 KDLYQDVLCLTLFDRDQFSPDDFLGRTEIPVAKIRTEQESKGPMTRRLLLHEVP 496
>pdb|2NSQ|A Chain A, Crystal Structure Of The C2 Domain Of The Human E3
Ubiquitin-Protein Ligase Nedd4-Like Protein
Length = 155
Score = 53.1 bits (126), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 50/135 (37%), Positives = 68/135 (50%), Gaps = 19/135 (14%)
Query: 6 LGVEVVSAYELMPKDGQGSSNAFVELHF---DGQK----FRTTTKEKDLTPVWNESFYFN 58
L V+VVS +L KD G+S+ +V+L D + +T T +K L P WNE FYF
Sbjct: 23 LRVKVVSGIDLAKKDIFGASDPYVKLSLYVADENRELALVQTKTIKKTLNPKWNEEFYFR 82
Query: 59 ISDPHNLSNLALDAYVYNHNRTTNSKSFLGKVRLTGTSFVPYSDAVVLH------YPLEK 112
+ N SN L V++ NR T FLG+V + S +P D + + L
Sbjct: 83 V----NPSNHRLLFEVFDENRLTRD-DFLGQVDVP-LSHLPTEDPTMERPYTFKDFLLRP 136
Query: 113 RSIFSRVKGELGLKV 127
RS SRVKG L LK+
Sbjct: 137 RSHKSRVKGFLRLKM 151
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 49/93 (52%), Gaps = 9/93 (9%)
Query: 438 VRVNVMEAQDLVISDKNRFPDAYVKVQI----GNQVL---KTKSVQSRTLNPVWNEDMMF 490
+RV V+ DL D D YVK+ + N+ L +TK+++ +TLNP WNE+ F
Sbjct: 23 LRVKVVSGIDLAKKDIFGASDPYVKLSLYVADENRELALVQTKTIK-KTLNPKWNEEFYF 81
Query: 491 VASEPFEDHLILTVEDRVGPNKDETIGKVVIPL 523
+ P L+ V D +D+ +G+V +PL
Sbjct: 82 RVN-PSNHRLLFEVFDENRLTRDDFLGQVDVPL 113
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 61/135 (45%), Gaps = 9/135 (6%)
Query: 270 QMRYLFVRVVKARDLPSKDVTGSLDPFVEVKV---GNYKGI----TKYYEKKQNPEWNEV 322
+ R L V+VV DL KD+ G+ DP+V++ + + + TK +K NP+WNE
Sbjct: 19 ESRILRVKVVSGIDLAKKDIFGASDPYVKLSLYVADENRELALVQTKTIKKTLNPKWNEE 78
Query: 323 FAFSRERIQSSVLEVAXXXXXXXXXXYVGLVRFDLNEVPTRVPP-DSPLAAEWYRLEDRK 381
F F +L ++G V L+ +PT P + P + + L R
Sbjct: 79 FYFRVNPSNHRLLFEVFDENRLTRDDFLGQVDVPLSHLPTEDPTMERPYTFKDFLLRPRS 138
Query: 382 GEKK-KGELMLAVWY 395
+ + KG L L + Y
Sbjct: 139 HKSRVKGFLRLKMAY 153
Score = 30.8 bits (68), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 35/62 (56%), Gaps = 5/62 (8%)
Query: 637 VRTRTIINSLSAKYNEQYTWEVYDPATVLTVGVFDNSHIGGSSGSKDVKIGKVRIRISTL 696
V+T+TI +L+ K+NE++ + V L VFD + + ++D +G+V + +S L
Sbjct: 62 VQTKTIKKTLNPKWNEEFYFRVNPSNHRLLFEVFDENRL-----TRDDFLGQVDVPLSHL 116
Query: 697 ET 698
T
Sbjct: 117 PT 118
>pdb|2EP6|A Chain A, Solution Structure Of The Second C2 Domain From Human
Mctp2 Protein
Length = 133
Score = 52.4 bits (124), Expect = 1e-06, Method: Composition-based stats.
Identities = 30/70 (42%), Positives = 42/70 (60%), Gaps = 1/70 (1%)
Query: 268 VEQMRYLFVRVVKARDLPSKDVTGSLDPFVEVKVGNYKGITKYYEKKQNPEWNEVFAFSR 327
V+ + L V+V+KA DL + D +G DPF +++GN + T K NPEWN+VF F
Sbjct: 9 VKDVGILQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTHTVYKNLNPEWNKVFTFPI 68
Query: 328 ERIQSSVLEV 337
+ I VLEV
Sbjct: 69 KDIH-DVLEV 77
Score = 50.4 bits (119), Expect = 5e-06, Method: Composition-based stats.
Identities = 31/89 (34%), Positives = 51/89 (57%), Gaps = 2/89 (2%)
Query: 438 VRVNVMEAQDLVISDKNRFPDAYVKVQIGNQVLKTKSVQSRTLNPVWNEDMMFVASEPFE 497
++V V++A DL+ +D + D + +++GN L+T +V + LNP WN+ F +
Sbjct: 15 LQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTHTVY-KNLNPEWNKVFTFPIKD-IH 72
Query: 498 DHLILTVEDRVGPNKDETIGKVVIPLHSV 526
D L +TV D G + +GKV IPL S+
Sbjct: 73 DVLEVTVFDEDGDKPPDFLGKVAIPLLSI 101
Score = 47.8 bits (112), Expect = 3e-05, Method: Composition-based stats.
Identities = 29/87 (33%), Positives = 45/87 (51%), Gaps = 5/87 (5%)
Query: 6 LGVEVVSAYELMPKDGQGSSNAFVELHFDGQKFRTTTKEKDLTPVWNESFYFNISDPHNL 65
L V+V+ A +L+ D G S+ F L + +T T K+L P WN+ F F I D H++
Sbjct: 15 LQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTHTVYKNLNPEWNKVFTFPIKDIHDV 74
Query: 66 SNLALDAYVYNHNRTTNSKSFLGKVRL 92
L+ V++ + FLGKV +
Sbjct: 75 ----LEVTVFDED-GDKPPDFLGKVAI 96
>pdb|2D8K|A Chain A, Solution Structure Of The First C2 Domain Of Synaptotagmin
Vii
Length = 141
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 3/59 (5%)
Query: 270 QMRYLFVRVVKARDLPSKDVTGSLDPFVEVKV---GNYKGITKYYEKKQNPEWNEVFAF 325
Q L V+++KA++LP+KD +G+ DPFV++ + +K TK K NP WNE F F
Sbjct: 24 QESTLTVKIMKAQELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLF 82
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 32/55 (58%), Gaps = 3/55 (5%)
Query: 6 LGVEVVSAYELMPKDGQGSSNAFVELHF---DGQKFRTTTKEKDLTPVWNESFYF 57
L V+++ A EL KD G+S+ FV+++ K T K K+L P WNE+F F
Sbjct: 28 LTVKIMKAQELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLF 82
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/113 (33%), Positives = 59/113 (52%), Gaps = 13/113 (11%)
Query: 440 VNVMEAQDLVISDKNRFPDAYVKVQI---GNQVLKTKSVQSRTLNPVWNEDMMFVASEPF 496
V +M+AQ+L D + D +VK+ + L+TK V+ + LNP WNE +F P+
Sbjct: 30 VKIMKAQELPAKDFSGTSDPFVKIYLLPDKKHKLETK-VKRKNLNPHWNETFLFEGF-PY 87
Query: 497 ED----HLILTVEDRVGPNKDETIGKVVIPLHSVEKRADDRIVHTRWFNLEKS 545
E L L V D ++++ IG+V IPL+ V D + T W +L+ S
Sbjct: 88 EKVVQRILYLQVLDYDRFSRNDPIGEVSIPLNKV----DLTQMQTFWKDLKPS 136
>pdb|3KWT|A Chain A, Munc13-1 C2b-Domain, Calcium-Free
pdb|3KWU|A Chain A, Munc13-1 C2b-Domain, Calcium Bound
Length = 148
Score = 48.1 bits (113), Expect = 2e-05, Method: Composition-based stats.
Identities = 29/65 (44%), Positives = 37/65 (56%), Gaps = 4/65 (6%)
Query: 276 VRVVKARDLPSKDVTGSLDPFVEVKVGNYKGITKYYEKKQNPEWNEVFAF----SRERIQ 331
+ VV A+ L +KD TGS DP+V V+VG K TK NP W E F F S +RI+
Sbjct: 21 ITVVCAQGLQAKDKTGSSDPYVTVQVGKTKKRTKTIYGNLNPVWEENFHFECHNSSDRIK 80
Query: 332 SSVLE 336
VL+
Sbjct: 81 VRVLD 85
Score = 47.8 bits (112), Expect = 3e-05, Method: Composition-based stats.
Identities = 41/131 (31%), Positives = 62/131 (47%), Gaps = 9/131 (6%)
Query: 5 KLGVEVVSAYELMPKDGQGSSNAFVELHFDGQKFRTTTKEKDLTPVWNESFYF---NISD 61
K+ + VV A L KD GSS+ +V + K RT T +L PVW E+F+F N SD
Sbjct: 18 KISITVVCAQGLQAKDKTGSSDPYVTVQVGKTKKRTKTIYGNLNPVWEENFHFECHNSSD 77
Query: 62 PHNLSNLALDAYVYNHNR---TTNSKSFLGKVRLTGTSFVPYSDAVVLHYPLEKRSIFSR 118
+ L D + + + S FLG+ + + S + + Y L+KR+ S
Sbjct: 78 RIKVRVLDEDDDIKSRVKQRFKRESDDFLGQTIIEVRTL---SGEMDVWYNLDKRTDKSA 134
Query: 119 VKGELGLKVFV 129
V G + L + V
Sbjct: 135 VSGAIRLHISV 145
Score = 47.4 bits (111), Expect = 4e-05, Method: Composition-based stats.
Identities = 39/142 (27%), Positives = 63/142 (44%), Gaps = 26/142 (18%)
Query: 438 VRVNVMEAQDLVISDKNRFPDAYVKVQIGNQVLKTKSVQSRTLNPVWNEDMMF------- 490
+ + V+ AQ L DK D YV VQ+G +TK++ LNPVW E+ F
Sbjct: 19 ISITVVCAQGLQAKDKTGSSDPYVTVQVGKTKKRTKTIYG-NLNPVWEENFHFECHNSSD 77
Query: 491 ---VASEPFEDHLILTVEDRVGPNKDETIGKVVIPLHSVEKRADDRIVHTRWFNLEKSV- 546
V +D + V+ R D+ +G+ +I + ++ D W+NL+K
Sbjct: 78 RIKVRVLDEDDDIKSRVKQRFKRESDDFLGQTIIEVRTLSGEMD------VWYNLDKRTD 131
Query: 547 SAALDGDNAKKDKFSSRLHLRV 568
+A+ G + RLH+ V
Sbjct: 132 KSAVSG--------AIRLHISV 145
Score = 34.3 bits (77), Expect = 0.39, Method: Composition-based stats.
Identities = 15/57 (26%), Positives = 31/57 (54%)
Query: 615 MKTRDGRGTADTYCVAKYGHKWVRTRTIINSLSAKYNEQYTWEVYDPATVLTVGVFD 671
++ +D G++D Y + G RT+TI +L+ + E + +E ++ + + V V D
Sbjct: 29 LQAKDKTGSSDPYVTVQVGKTKKRTKTIYGNLNPVWEENFHFECHNSSDRIKVRVLD 85
>pdb|2R83|A Chain A, Crystal Structure Analysis Of Human Synaptotagmin 1
C2a-c2b
pdb|2R83|B Chain B, Crystal Structure Analysis Of Human Synaptotagmin 1
C2a-c2b
Length = 284
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 66/277 (23%), Positives = 114/277 (41%), Gaps = 61/277 (22%)
Query: 265 YDLVEQMRYLFVRVVKARDLPSKDVTGSLDPFVEVKV---GNYKGITKYYEKKQNPEWNE 321
YD Q L V +++A +LP+ D+ G+ DP+V+V + K TK + K NP +NE
Sbjct: 14 YDF--QNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNE 71
Query: 322 VFAFSRERIQSSVLEVAXXXXXXXXXXYVGLVRFDL---NEVPTRVPPDSPLAAEWYRLE 378
F F ++ S E+A + + D+ +VP + EW L+
Sbjct: 72 QFTF---KVPYS--ELAGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQ 126
Query: 379 --DRKGEKKKGELMLAVWYGTQADEAFPDAWHSDAVTPTDSPSNVSTHIRSKVYHSPRLW 436
+++ ++K G++ ++ Y P
Sbjct: 127 SAEKEEQEKLGDICFSLRY------------------------------------VPTAG 150
Query: 437 YVRVNVMEAQDLVISDKNRFPDAYVKVQIGNQ----VLKTKSVQSRTLNPVWNEDMMFVA 492
+ V ++EA++L D D YVK+ + K +++ TLNP +NE F
Sbjct: 151 KLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEV 210
Query: 493 SEPFED----HLILTVEDRVGPNKDETIGKVVIPLHS 525
PFE +++TV D K++ IGKV + +S
Sbjct: 211 --PFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNS 245
Score = 36.6 bits (83), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 49/93 (52%), Gaps = 6/93 (6%)
Query: 440 VNVMEAQDLVISDKNRFPDAYVKVQI---GNQVLKTKSVQSRTLNPVWNEDMMFVA--SE 494
V +++A +L D D YVKV + + +TK V +TLNPV+NE F SE
Sbjct: 23 VGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETK-VHRKTLNPVFNEQFTFKVPYSE 81
Query: 495 PFEDHLILTVEDRVGPNKDETIGKVVIPLHSVE 527
L++ V D +K + IG+ +P+++V+
Sbjct: 82 LAGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVD 114
Score = 35.8 bits (81), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 42/79 (53%), Gaps = 6/79 (7%)
Query: 5 KLGVEVVSAYELMPKDGQGSSNAFVELHF---DGQKFRTTTKEKDLTPVWNESFYFNISD 61
+L V ++ A EL D G+S+ +V++ +KF T K L PV+NE F F +
Sbjct: 20 QLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKV-- 77
Query: 62 PHN-LSNLALDAYVYNHNR 79
P++ L+ L VY+ +R
Sbjct: 78 PYSELAGKTLVMAVYDFDR 96
Score = 30.4 bits (67), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 37/153 (24%), Positives = 68/153 (44%), Gaps = 14/153 (9%)
Query: 602 LELGILNADGLHPMKTRDGRGTADTYC---VAKYGHKWVRTRTIINSLSAKYNEQYTWEV 658
L +GI+ A L + D GT+D Y + K T+ +L+ +NEQ+T++V
Sbjct: 21 LLVGIIQAAELPAL---DMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKV 77
Query: 659 -YD--PATVLTVGVFDNSHIGGSSGSKDVKIGKVRIRISTLETGRVYTHSYPLLVLHPSG 715
Y L + V+D SK IG+ ++ ++T++ G V L
Sbjct: 78 PYSELAGKTLVMAVYDFDRF-----SKHDIIGEFKVPMNTVDFGHVTEEWRDLQSAEKEE 132
Query: 716 VKKMGELHLAIRFSYTSFANMMFLYSRPLLPKM 748
+K+G++ ++R+ T+ + + L KM
Sbjct: 133 QEKLGDICFSLRYVPTAGKLTVVILEAKNLKKM 165
>pdb|1RH8|A Chain A, Three-Dimensional Structure Of The Calcium-Free Piccolo
C2a- Domain
Length = 142
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 40/82 (48%), Gaps = 17/82 (20%)
Query: 274 LFVRVVKARDLPSKDVTGSLDPFVEVKV--------------GNYKGITKYYEKKQNPEW 319
L + +++AR+L +D G DPFV+V + YK TKY +K NPEW
Sbjct: 20 LIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNPEW 79
Query: 320 NEVFAF---SRERIQSSVLEVA 338
N+ + S E++ LEV
Sbjct: 80 NQTVIYKSISMEQLMKKTLEVT 101
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 59/123 (47%), Gaps = 16/123 (13%)
Query: 6 LGVEVVSAYELMPKDGQGSSNAFVELHF---DGQ-----------KFRTTTKEKDLTPVW 51
L + ++ A L+P+D G S+ FV+++ GQ K RT +K L P W
Sbjct: 20 LIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNPEW 79
Query: 52 NESFYFNISDPHNLSNLALDAYVYNHNRTTNSKSFLGKVRLTGTSFVPYSDAVVLHYPLE 111
N++ + L L+ V++++R + S FLG+V L S + D YPL+
Sbjct: 80 NQTVIYKSISMEQLMKKTLEVTVWDYDRFS-SNDFLGEV-LIDLSSTSHLDNTPRWYPLK 137
Query: 112 KRS 114
+++
Sbjct: 138 EQT 140
Score = 35.8 bits (81), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 65/126 (51%), Gaps = 22/126 (17%)
Query: 440 VNVMEAQDLVISDKNRFPDAYVKVQI---GNQVL-----------KTKSVQSRTLNPVWN 485
+++++A++LV D N + D +VKV + QV+ +TK VQ ++LNP WN
Sbjct: 22 IHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQ-KSLNPEWN 80
Query: 486 EDMMFVA---SEPFEDHLILTVEDRVGPNKDETIGKVVIPLHSVEKRADDRIVHTRWFNL 542
+ +++ + + + L +TV D + ++ +G+V+I L S + RW+ L
Sbjct: 81 QTVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDLSSTSHLDNT----PRWYPL 136
Query: 543 EKSVSA 548
++ +
Sbjct: 137 KEQTES 142
>pdb|3B7Y|A Chain A, Crystal Structure Of The C2 Domain Of The E3 Ubiquitin-
Protein Ligase Nedd4
pdb|3B7Y|B Chain B, Crystal Structure Of The C2 Domain Of The E3 Ubiquitin-
Protein Ligase Nedd4
Length = 153
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 52/95 (54%), Gaps = 8/95 (8%)
Query: 438 VRVNVMEAQDLVISDKNRFPDAYVKVQI---GNQVL---KTKSVQSRTLNPVWNEDMMFV 491
VRV V+ L D D YV+V + N VL +TK+++ ++LNP WNE+++F
Sbjct: 22 VRVRVIAGIGLAKKDILGASDPYVRVTLYDPMNGVLTSVQTKTIK-KSLNPKWNEEILF- 79
Query: 492 ASEPFEDHLILTVEDRVGPNKDETIGKVVIPLHSV 526
P + L+ V D +D+ +G+V +PL+ +
Sbjct: 80 RVHPQQHRLLFEVFDENRLTRDDFLGQVDVPLYPL 114
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 59/135 (43%), Gaps = 8/135 (5%)
Query: 269 EQMRYLFVRVVKARDLPSKDVTGSLDPFVEVKVGN-YKGI-----TKYYEKKQNPEWNEV 322
E R + VRV+ L KD+ G+ DP+V V + + G+ TK +K NP+WNE
Sbjct: 17 ENSRIVRVRVIAGIGLAKKDILGASDPYVRVTLYDPMNGVLTSVQTKTIKKSLNPKWNEE 76
Query: 323 FAFSRERIQSSVLEVAXXXXXXXXXXYVGLVRFDLNEVPTRVPP-DSPLAAEWYRLEDRK 381
F Q +L ++G V L +PT P + P + + L R
Sbjct: 77 ILFRVHPQQHRLLFEVFDENRLTRDDFLGQVDVPLYPLPTENPRLERPYTFKDFVLHPRS 136
Query: 382 GEKK-KGELMLAVWY 395
+ + KG L L + Y
Sbjct: 137 HKSRVKGYLRLKMTY 151
Score = 35.0 bits (79), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 42/135 (31%), Positives = 59/135 (43%), Gaps = 24/135 (17%)
Query: 8 VEVVSAYELMPKDGQGSSNAFVELHF----DG--QKFRTTTKEKDLTPVWNESFYFNISD 61
V V++ L KD G+S+ +V + +G +T T +K L P WNE F +
Sbjct: 24 VRVIAGIGLAKKDILGASDPYVRVTLYDPMNGVLTSVQTKTIKKSLNPKWNEEILFRVHP 83
Query: 62 PHNLSNLALDAYVYNHNRTTNSKSFLGKVRLTGTSFV--------PYS-DAVVLHYPLEK 112
+ L V++ NR T FLG+V + PY+ VLH
Sbjct: 84 QQH----RLLFEVFDENRLTRD-DFLGQVDVPLYPLPTENPRLERPYTFKDFVLH----P 134
Query: 113 RSIFSRVKGELGLKV 127
RS SRVKG L LK+
Sbjct: 135 RSHKSRVKGYLRLKM 149
Score = 34.3 bits (77), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 50/99 (50%), Gaps = 12/99 (12%)
Query: 637 VRTRTIINSLSAKYNEQYTWEVYDPATVLTVGVFDNSHIGGSSGSKDVKIGKVRIRISTL 696
V+T+TI SL+ K+NE+ + V+ L VFD + + ++D +G+V + + L
Sbjct: 60 VQTKTIKKSLNPKWNEEILFRVHPQQHRLLFEVFDENRL-----TRDDFLGQVDVPLYPL 114
Query: 697 ET-----GRVYTHSYPLLVLHPSGVKKMGELHLAIRFSY 730
T R YT + VLHP K + +L ++ +Y
Sbjct: 115 PTENPRLERPYT--FKDFVLHPRSHKSRVKGYLRLKMTY 151
>pdb|3GPE|A Chain A, Crystal Structure Analysis Of Pkc (Alpha)-C2 Domain
Complexed With Ca2+ And Ptdins(4,5)p2
pdb|3RDJ|A Chain A, Rat Pkc C2 Domain Apo
pdb|3TWY|A Chain A, Rat Pkc C2 Domain Bound To Pb
Length = 137
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 46/91 (50%), Gaps = 8/91 (8%)
Query: 5 KLGVEVVSAYELMPKDGQGSSNAFVELHF-----DGQKFRTTTKEKDLTPVWNESFYFNI 59
KL V V A L+P D G S+ +V+L + K +T T L P WNESF F +
Sbjct: 17 KLHVTVRDAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIRSTLNPQWNESFTFKL 76
Query: 60 SDPHNLSNLALDAYVYNHNRTTNSKSFLGKV 90
L+++ +++ +RTT + F+G +
Sbjct: 77 KPSDKDRRLSVE--IWDWDRTTRN-DFMGSL 104
Score = 37.7 bits (86), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 33/58 (56%), Gaps = 6/58 (10%)
Query: 438 VRVNVMEAQDLVISDKNRFPDAYVKVQI-----GNQVLKTKSVQSRTLNPVWNEDMMF 490
+ V V +A++L+ D N D YVK+++ KTK+++S TLNP WNE F
Sbjct: 18 LHVTVRDAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIRS-TLNPQWNESFTF 74
Score = 33.5 bits (75), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 28/57 (49%), Gaps = 5/57 (8%)
Query: 274 LFVRVVKARDLPSKDVTGSLDPFVEVKV-----GNYKGITKYYEKKQNPEWNEVFAF 325
L V V A++L D G DP+V++K+ K TK NP+WNE F F
Sbjct: 18 LHVTVRDAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIRSTLNPQWNESFTF 74
>pdb|1DSY|A Chain A, C2 Domain From Protein Kinase C (Alpha) Complexed With
Ca2+ And Phosphatidylserine
Length = 139
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 46/91 (50%), Gaps = 8/91 (8%)
Query: 5 KLGVEVVSAYELMPKDGQGSSNAFVELHF-----DGQKFRTTTKEKDLTPVWNESFYFNI 59
KL V V A L+P D G S+ +V+L + K +T T L P WNESF F +
Sbjct: 18 KLHVTVRDAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIRSTLNPQWNESFTFKL 77
Query: 60 SDPHNLSNLALDAYVYNHNRTTNSKSFLGKV 90
L+++ +++ +RTT + F+G +
Sbjct: 78 KPSDKDRRLSVE--IWDWDRTTRN-DFMGSL 105
Score = 37.7 bits (86), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 33/58 (56%), Gaps = 6/58 (10%)
Query: 438 VRVNVMEAQDLVISDKNRFPDAYVKVQI-----GNQVLKTKSVQSRTLNPVWNEDMMF 490
+ V V +A++L+ D N D YVK+++ KTK+++S TLNP WNE F
Sbjct: 19 LHVTVRDAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIRS-TLNPQWNESFTF 75
Score = 33.5 bits (75), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 28/57 (49%), Gaps = 5/57 (8%)
Query: 274 LFVRVVKARDLPSKDVTGSLDPFVEVKV-----GNYKGITKYYEKKQNPEWNEVFAF 325
L V V A++L D G DP+V++K+ K TK NP+WNE F F
Sbjct: 19 LHVTVRDAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIRSTLNPQWNESFTF 75
>pdb|2UZP|A Chain A, Crystal Structure Of The C2 Domain Of Human Protein Kinase
C Gamma.
pdb|2UZP|B Chain B, Crystal Structure Of The C2 Domain Of Human Protein Kinase
C Gamma.
pdb|2UZP|C Chain C, Crystal Structure Of The C2 Domain Of Human Protein Kinase
C Gamma
Length = 144
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 48/89 (53%), Gaps = 8/89 (8%)
Query: 5 KLGVEVVSAYELMPKDGQGSSNAFVELHF-----DGQKFRTTTKEKDLTPVWNESFYFNI 59
++ V V A L+P D G S+ +V+L + K +T T + L PVWNE+F FN+
Sbjct: 21 EIHVTVGEARNLIPMDPNGLSDPYVKLKLIPDPRNLTKQKTRTVKATLNPVWNETFVFNL 80
Query: 60 SDPHNLSNLALDAYVYNHNRTTNSKSFLG 88
P ++ L V++ +RT+ + F+G
Sbjct: 81 K-PGDVER-RLSVEVWDWDRTSRN-DFMG 106
Score = 38.5 bits (88), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 35/58 (60%), Gaps = 6/58 (10%)
Query: 438 VRVNVMEAQDLVISDKNRFPDAYVKVQI-----GNQVLKTKSVQSRTLNPVWNEDMMF 490
+ V V EA++L+ D N D YVK+++ KT++V++ TLNPVWNE +F
Sbjct: 22 IHVTVGEARNLIPMDPNGLSDPYVKLKLIPDPRNLTKQKTRTVKA-TLNPVWNETFVF 78
Score = 33.1 bits (74), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 36/73 (49%), Gaps = 11/73 (15%)
Query: 259 DLRASTYDLVEQMRYLFVRVVKARDLPSKDVTGSLDPFVEVKV-----GNYKGITKYYEK 313
++RA T D + V V +AR+L D G DP+V++K+ K T+ +
Sbjct: 13 EIRAPTADEIH------VTVGEARNLIPMDPNGLSDPYVKLKLIPDPRNLTKQKTRTVKA 66
Query: 314 KQNPEWNEVFAFS 326
NP WNE F F+
Sbjct: 67 TLNPVWNETFVFN 79
>pdb|4DNL|A Chain A, Crystal Structure Of A C2 Domain Of A Protein Kinase C
Alpha (Prkca) From Homo Sapiens At 1.90 A Resolution
Length = 140
Score = 39.7 bits (91), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 45/91 (49%), Gaps = 8/91 (8%)
Query: 5 KLGVEVVSAYELMPKDGQGSSNAFVELHF-----DGQKFRTTTKEKDLTPVWNESFYFNI 59
KL V V A L+P D G S+ +V+L + K +T T L P WNESF F +
Sbjct: 19 KLHVTVRDAKNLIPXDPNGLSDPYVKLKLIPDPKNESKQKTKTIRSTLNPQWNESFTFKL 78
Query: 60 SDPHNLSNLALDAYVYNHNRTTNSKSFLGKV 90
L+++ +++ +RTT + F G +
Sbjct: 79 KPSDKDRRLSVE--IWDWDRTTRN-DFXGSL 106
Score = 38.9 bits (89), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 40/73 (54%), Gaps = 7/73 (9%)
Query: 438 VRVNVMEAQDLVISDKNRFPDAYVKVQI-----GNQVLKTKSVQSRTLNPVWNEDMMFVA 492
+ V V +A++L+ D N D YVK+++ KTK+++S TLNP WNE F
Sbjct: 20 LHVTVRDAKNLIPXDPNGLSDPYVKLKLIPDPKNESKQKTKTIRS-TLNPQWNESFTFKL 78
Query: 493 SEPFEDHLILTVE 505
+P + L+VE
Sbjct: 79 -KPSDKDRRLSVE 90
Score = 33.9 bits (76), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 28/57 (49%), Gaps = 5/57 (8%)
Query: 274 LFVRVVKARDLPSKDVTGSLDPFVEVKV-----GNYKGITKYYEKKQNPEWNEVFAF 325
L V V A++L D G DP+V++K+ K TK NP+WNE F F
Sbjct: 20 LHVTVRDAKNLIPXDPNGLSDPYVKLKLIPDPKNESKQKTKTIRSTLNPQWNESFTF 76
>pdb|2CM5|A Chain A, Crystal Structure Of The C2b Domain Of Rabphilin
Length = 166
Score = 38.5 bits (88), Expect = 0.020, Method: Composition-based stats.
Identities = 26/92 (28%), Positives = 46/92 (50%), Gaps = 7/92 (7%)
Query: 6 LGVEVVSAYELMPKDGQGSSNAFVELHFD-----GQKFRTTTKEKDLTPVWNESFYFNIS 60
L V ++ L D G S+ FV+L K +T K+K L P +NE F+++I
Sbjct: 39 LIVGIIRCVHLAAXDANGYSDPFVKLWLKPDXGKKAKHKTQIKKKTLNPEFNEEFFYDIK 98
Query: 61 DPHNLSNLALDAYVYNHNRTTNSKSFLGKVRL 92
+L+ +LD V++++ S ++G +L
Sbjct: 99 HS-DLAKKSLDISVWDYD-IGKSNDYIGGCQL 128
Score = 30.8 bits (68), Expect = 3.7, Method: Composition-based stats.
Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 9/59 (15%)
Query: 274 LFVRVVKARDLPSKDVTGSLDPFVEV-------KVGNYKGITKYYEKKQNPEWNEVFAF 325
L V +++ L + D G DPFV++ K +K T+ +K NPE+NE F +
Sbjct: 39 LIVGIIRCVHLAAXDANGYSDPFVKLWLKPDXGKKAKHK--TQIKKKTLNPEFNEEFFY 95
Score = 30.0 bits (66), Expect = 6.0, Method: Composition-based stats.
Identities = 14/55 (25%), Positives = 27/55 (49%), Gaps = 4/55 (7%)
Query: 440 VNVMEAQDLVISDKNRFPDAYVKVQI----GNQVLKTKSVQSRTLNPVWNEDMMF 490
V ++ L D N + D +VK+ + G + ++ +TLNP +NE+ +
Sbjct: 41 VGIIRCVHLAAXDANGYSDPFVKLWLKPDXGKKAKHKTQIKKKTLNPEFNEEFFY 95
>pdb|2CHD|A Chain A, Crystal Structure Of The C2a Domain Of Rabphilin-3a
Length = 142
Score = 38.5 bits (88), Expect = 0.020, Method: Composition-based stats.
Identities = 23/93 (24%), Positives = 43/93 (46%), Gaps = 6/93 (6%)
Query: 6 LGVEVVSAYELMPKDGQGSSNAFVELHF-----DGQKFRTTTKEKDLTPVWNESFYFNIS 60
L ++ A L P D G ++ +V+LH K RT T PVWNE+ ++
Sbjct: 31 LQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRNTRNPVWNETLQYHGI 90
Query: 61 DPHNLSNLALDAYVYNHNRTTNSKSFLGKVRLT 93
++ L V + ++ +++ F+G+ R +
Sbjct: 91 TEEDMQRKTLRISVCDEDKFGHNE-FIGETRFS 122
Score = 35.4 bits (80), Expect = 0.15, Method: Composition-based stats.
Identities = 28/99 (28%), Positives = 50/99 (50%), Gaps = 11/99 (11%)
Query: 438 VRVNVMEAQDLVISDKNRFPDAYVKVQIGNQVLKTKSVQSRTL----NPVWNEDMMF--V 491
++ ++ A+ L D N D YVK+ + K+ ++++TL NPVWNE + + +
Sbjct: 31 LQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRNTRNPVWNETLQYHGI 90
Query: 492 ASEPFEDH-LILTV--EDRVGPNKDETIGKVVIPLHSVE 527
E + L ++V ED+ G N E IG+ L ++
Sbjct: 91 TEEDMQRKTLRISVCDEDKFGHN--EFIGETRFSLKKLK 127
Score = 32.7 bits (73), Expect = 1.1, Method: Composition-based stats.
Identities = 22/92 (23%), Positives = 41/92 (44%), Gaps = 9/92 (9%)
Query: 278 VVKARDLPSKDVTGSLDPFVEVKV-----GNYKGITKYYEKKQNPEWNEVFAF---SRER 329
+++A+ L D G DP+V++ + + K TK +NP WNE + + E
Sbjct: 35 IIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRNTRNPVWNETLQYHGITEED 94
Query: 330 IQSSVLEVAX-XXXXXXXXXYVGLVRFDLNEV 360
+Q L ++ ++G RF L ++
Sbjct: 95 MQRKTLRISVCDEDKFGHNEFIGETRFSLKKL 126
>pdb|2K3H|A Chain A, Structural Determinants For Ca2+ And Pip2 Binding By The
C2a Domain Of Rabphilin-3a
Length = 140
Score = 38.5 bits (88), Expect = 0.021, Method: Composition-based stats.
Identities = 23/93 (24%), Positives = 43/93 (46%), Gaps = 6/93 (6%)
Query: 6 LGVEVVSAYELMPKDGQGSSNAFVELHF-----DGQKFRTTTKEKDLTPVWNESFYFNIS 60
L ++ A L P D G ++ +V+LH K RT T PVWNE+ ++
Sbjct: 29 LQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRNTRNPVWNETLQYHGI 88
Query: 61 DPHNLSNLALDAYVYNHNRTTNSKSFLGKVRLT 93
++ L V + ++ +++ F+G+ R +
Sbjct: 89 TEEDMQRKTLRISVCDEDKFGHNE-FIGETRFS 120
Score = 35.4 bits (80), Expect = 0.16, Method: Composition-based stats.
Identities = 28/99 (28%), Positives = 50/99 (50%), Gaps = 11/99 (11%)
Query: 438 VRVNVMEAQDLVISDKNRFPDAYVKVQIGNQVLKTKSVQSRTL----NPVWNEDMMF--V 491
++ ++ A+ L D N D YVK+ + K+ ++++TL NPVWNE + + +
Sbjct: 29 LQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRNTRNPVWNETLQYHGI 88
Query: 492 ASEPFEDH-LILTV--EDRVGPNKDETIGKVVIPLHSVE 527
E + L ++V ED+ G N E IG+ L ++
Sbjct: 89 TEEDMQRKTLRISVCDEDKFGHN--EFIGETRFSLKKLK 125
Score = 32.7 bits (73), Expect = 1.1, Method: Composition-based stats.
Identities = 22/92 (23%), Positives = 41/92 (44%), Gaps = 9/92 (9%)
Query: 278 VVKARDLPSKDVTGSLDPFVEVKV-----GNYKGITKYYEKKQNPEWNEVFAF---SRER 329
+++A+ L D G DP+V++ + + K TK +NP WNE + + E
Sbjct: 33 IIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRNTRNPVWNETLQYHGITEED 92
Query: 330 IQSSVLEVAX-XXXXXXXXXYVGLVRFDLNEV 360
+Q L ++ ++G RF L ++
Sbjct: 93 MQRKTLRISVCDEDKFGHNEFIGETRFSLKKL 124
>pdb|3PFQ|A Chain A, Crystal Structure And Allosteric Activation Of Protein
Kinase C Beta Ii
Length = 674
Score = 38.1 bits (87), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 54/109 (49%), Gaps = 12/109 (11%)
Query: 440 VNVMEAQDLVISDKNRFPDAYVKVQI-----GNQVLKTKSVQSRTLNPVWNEDMMFVASE 494
V V +A++LV D N D YVK+++ KTK+++S +LNP WNE F E
Sbjct: 176 VVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKS-SLNPEWNETFRFQLKE 234
Query: 495 PFED-HLILTVEDRVGPNKDETIGKVVIPLHSVEKRADDRIVHTRWFNL 542
+D L + + D ++++ +G + + ++K D WF L
Sbjct: 235 SDKDRRLSVEIWDWDLTSRNDFMGSLSFGISELQKAGVD-----GWFKL 278
Score = 35.0 bits (79), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 29/58 (50%), Gaps = 5/58 (8%)
Query: 274 LFVRVVKARDLPSKDVTGSLDPFVEVKV-----GNYKGITKYYEKKQNPEWNEVFAFS 326
L V V A++L D G DP+V++K+ K TK + NPEWNE F F
Sbjct: 174 LIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKSSLNPEWNETFRFQ 231
Score = 35.0 bits (79), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 43/90 (47%), Gaps = 8/90 (8%)
Query: 6 LGVEVVSAYELMPKDGQGSSNAFVELHF-----DGQKFRTTTKEKDLTPVWNESFYFNIS 60
L V V A L+P D G S+ +V+L K +T T + L P WNE+F F +
Sbjct: 174 LIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKSSLNPEWNETFRFQLK 233
Query: 61 DPHNLSNLALDAYVYNHNRTTNSKSFLGKV 90
+ L+++ + ++ T+ F+G +
Sbjct: 234 ESDKDRRLSVEIWDWD---LTSRNDFMGSL 260
>pdb|3RPB|A Chain A, The C2b-Domain Of Rabphilin: Structural Variations In A
Janus-Faced Domain
Length = 140
Score = 38.1 bits (87), Expect = 0.027, Method: Composition-based stats.
Identities = 26/92 (28%), Positives = 46/92 (50%), Gaps = 7/92 (7%)
Query: 6 LGVEVVSAYELMPKDGQGSSNAFVELHFD-----GQKFRTTTKEKDLTPVWNESFYFNIS 60
L V ++ L D G S+ FV+L K +T K+K L P +NE F+++I
Sbjct: 17 LIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYDIK 76
Query: 61 DPHNLSNLALDAYVYNHNRTTNSKSFLGKVRL 92
+L+ +LD V++++ S ++G +L
Sbjct: 77 HS-DLAKKSLDISVWDYD-IGKSNDYIGGCQL 106
Score = 30.4 bits (67), Expect = 4.9, Method: Composition-based stats.
Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 9/59 (15%)
Query: 274 LFVRVVKARDLPSKDVTGSLDPFVEV-------KVGNYKGITKYYEKKQNPEWNEVFAF 325
L V +++ L + D G DPFV++ K +K T+ +K NPE+NE F +
Sbjct: 17 LIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHK--TQIKKKTLNPEFNEEFFY 73
Score = 30.4 bits (67), Expect = 5.7, Method: Composition-based stats.
Identities = 14/55 (25%), Positives = 27/55 (49%), Gaps = 4/55 (7%)
Query: 440 VNVMEAQDLVISDKNRFPDAYVKV----QIGNQVLKTKSVQSRTLNPVWNEDMMF 490
V ++ L D N + D +VK+ +G + ++ +TLNP +NE+ +
Sbjct: 19 VGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFY 73
>pdb|2CM6|A Chain A, Crystal Structure Of The C2b Domain Of Rabphilin3a
pdb|2CM6|B Chain B, Crystal Structure Of The C2b Domain Of Rabphilin3a
Length = 166
Score = 38.1 bits (87), Expect = 0.027, Method: Composition-based stats.
Identities = 26/92 (28%), Positives = 46/92 (50%), Gaps = 7/92 (7%)
Query: 6 LGVEVVSAYELMPKDGQGSSNAFVELHFD-----GQKFRTTTKEKDLTPVWNESFYFNIS 60
L V ++ L D G S+ FV+L K +T K+K L P +NE F+++I
Sbjct: 39 LIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYDIK 98
Query: 61 DPHNLSNLALDAYVYNHNRTTNSKSFLGKVRL 92
+L+ +LD V++++ S ++G +L
Sbjct: 99 HS-DLAKKSLDISVWDYD-IGKSNDYIGGCQL 128
Score = 30.4 bits (67), Expect = 5.0, Method: Composition-based stats.
Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 9/59 (15%)
Query: 274 LFVRVVKARDLPSKDVTGSLDPFVEV-------KVGNYKGITKYYEKKQNPEWNEVFAF 325
L V +++ L + D G DPFV++ K +K T+ +K NPE+NE F +
Sbjct: 39 LIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHK--TQIKKKTLNPEFNEEFFY 95
Score = 30.4 bits (67), Expect = 5.7, Method: Composition-based stats.
Identities = 14/55 (25%), Positives = 27/55 (49%), Gaps = 4/55 (7%)
Query: 440 VNVMEAQDLVISDKNRFPDAYVKV----QIGNQVLKTKSVQSRTLNPVWNEDMMF 490
V ++ L D N + D +VK+ +G + ++ +TLNP +NE+ +
Sbjct: 41 VGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFY 95
>pdb|3F04|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain
pdb|3F01|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain With
Cu(Ii)
pdb|3F05|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain With
Mn(Ii)
Length = 143
Score = 37.7 bits (86), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 34/59 (57%), Gaps = 3/59 (5%)
Query: 270 QMRYLFVRVVKARDLPSKDVTGSLDPFVEVKV---GNYKGITKYYEKKQNPEWNEVFAF 325
Q L V +++A +LP+ D+ G+ DP+V+V + K TK + K NP +NE F F
Sbjct: 32 QNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTF 90
Score = 37.4 bits (85), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 49/93 (52%), Gaps = 6/93 (6%)
Query: 440 VNVMEAQDLVISDKNRFPDAYVKVQI---GNQVLKTKSVQSRTLNPVWNEDMMFVA--SE 494
V +++A +L D D YVKV + + +TK V +TLNPV+NE F SE
Sbjct: 38 VGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETK-VHRKTLNPVFNEQFTFKVPYSE 96
Query: 495 PFEDHLILTVEDRVGPNKDETIGKVVIPLHSVE 527
L++ V D +K + IG+ +P+++V+
Sbjct: 97 LGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVD 129
Score = 35.4 bits (80), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 41/79 (51%), Gaps = 6/79 (7%)
Query: 5 KLGVEVVSAYELMPKDGQGSSNAFVELHF---DGQKFRTTTKEKDLTPVWNESFYFNISD 61
+L V ++ A EL D G+S+ +V++ +KF T K L PV+NE F F +
Sbjct: 35 QLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKV-- 92
Query: 62 PHN-LSNLALDAYVYNHNR 79
P++ L L VY+ +R
Sbjct: 93 PYSELGGKTLVMAVYDFDR 111
>pdb|3M7F|B Chain B, Crystal Structure Of The Nedd4 C2GRB10 SH2 COMPLEX
Length = 176
Score = 37.7 bits (86), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 51/95 (53%), Gaps = 8/95 (8%)
Query: 438 VRVNVMEAQDLVISDKNRFPDAYVKVQIGNQV------LKTKSVQSRTLNPVWNEDMMFV 491
VRV V+ L D D YV+V + + + ++TK+++ ++LNP WNE+++F
Sbjct: 10 VRVKVIAGIGLAKKDILGASDPYVRVTLYDPMSGILTSVQTKTIK-KSLNPKWNEEILFR 68
Query: 492 ASEPFEDHLILTVEDRVGPNKDETIGKVVIPLHSV 526
P ++ V D +D+ +G+V +PL+ +
Sbjct: 69 VL-PQRHRILFEVFDENRLTRDDFLGQVDVPLYPL 102
Score = 37.4 bits (85), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 75/173 (43%), Gaps = 21/173 (12%)
Query: 269 EQMRYLFVRVVKARDLPSKDVTGSLDPFVEVKVGN-YKGI-----TKYYEKKQNPEWNEV 322
+ R + V+V+ L KD+ G+ DP+V V + + GI TK +K NP+WNE
Sbjct: 5 DDTRVVRVKVIAGIGLAKKDILGASDPYVRVTLYDPMSGILTSVQTKTIKKSLNPKWNEE 64
Query: 323 FAF----SRERIQSSVLEVAXXXXXXXXXXYVGLVRFDLNEVPTRVPP-DSPLAAEWYRL 377
F R RI V + ++G V L +PT P + P + + L
Sbjct: 65 ILFRVLPQRHRILFEVFD----ENRLTRDDFLGQVDVPLYPLPTENPRMERPYTFKDFVL 120
Query: 378 EDRKGEKK-KGELMLAVWYGTQADEAFPDAWHSDAVTP----TDSPSNVSTHI 425
R + + KG L L + Y + +A ++ + P D P + +TH+
Sbjct: 121 HPRSHKSRVKGYLRLKMTYLPKNGSEDENADQAEELEPGWVVLDQP-DAATHL 172
Score = 33.9 bits (76), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 43/135 (31%), Positives = 60/135 (44%), Gaps = 24/135 (17%)
Query: 8 VEVVSAYELMPKDGQGSSNAFVELH-FDGQK-----FRTTTKEKDLTPVWNESFYFNISD 61
V+V++ L KD G+S+ +V + +D +T T +K L P WNE F +
Sbjct: 12 VKVIAGIGLAKKDILGASDPYVRVTLYDPMSGILTSVQTKTIKKSLNPKWNEEILFRVL- 70
Query: 62 PHNLSNLALDAYVYNHNRTTNSKSFLGKVRLTGTSFV--------PYS-DAVVLHYPLEK 112
P L V++ NR T FLG+V + PY+ VLH
Sbjct: 71 PQRHRIL---FEVFDENRLTRD-DFLGQVDVPLYPLPTENPRMERPYTFKDFVLH----P 122
Query: 113 RSIFSRVKGELGLKV 127
RS SRVKG L LK+
Sbjct: 123 RSHKSRVKGYLRLKM 137
Score = 33.1 bits (74), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 49/99 (49%), Gaps = 12/99 (12%)
Query: 637 VRTRTIINSLSAKYNEQYTWEVYDPATVLTVGVFDNSHIGGSSGSKDVKIGKVRIRISTL 696
V+T+TI SL+ K+NE+ + V + VFD + + ++D +G+V + + L
Sbjct: 48 VQTKTIKKSLNPKWNEEILFRVLPQRHRILFEVFDENRL-----TRDDFLGQVDVPLYPL 102
Query: 697 ET-----GRVYTHSYPLLVLHPSGVKKMGELHLAIRFSY 730
T R YT + VLHP K + +L ++ +Y
Sbjct: 103 PTENPRMERPYT--FKDFVLHPRSHKSRVKGYLRLKMTY 139
>pdb|1RSY|A Chain A, Structure Of The First C2-domain Of Synaptotagmin I: A
Novel Ca2+(slash)phospholipid Binding Fold
Length = 152
Score = 37.7 bits (86), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 34/59 (57%), Gaps = 3/59 (5%)
Query: 270 QMRYLFVRVVKARDLPSKDVTGSLDPFVEVKV---GNYKGITKYYEKKQNPEWNEVFAF 325
Q L V +++A +LP+ D+ G+ DP+V+V + K TK + K NP +NE F F
Sbjct: 40 QNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTF 98
Score = 37.0 bits (84), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 49/93 (52%), Gaps = 6/93 (6%)
Query: 440 VNVMEAQDLVISDKNRFPDAYVKVQI---GNQVLKTKSVQSRTLNPVWNEDMMFVA--SE 494
V +++A +L D D YVKV + + +TK V +TLNPV+NE F SE
Sbjct: 46 VGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETK-VHRKTLNPVFNEQFTFKVPYSE 104
Query: 495 PFEDHLILTVEDRVGPNKDETIGKVVIPLHSVE 527
L++ V D +K + IG+ +P+++V+
Sbjct: 105 LGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVD 137
Score = 35.0 bits (79), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 41/79 (51%), Gaps = 6/79 (7%)
Query: 5 KLGVEVVSAYELMPKDGQGSSNAFVELHF---DGQKFRTTTKEKDLTPVWNESFYFNISD 61
+L V ++ A EL D G+S+ +V++ +KF T K L PV+NE F F +
Sbjct: 43 QLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKV-- 100
Query: 62 PHN-LSNLALDAYVYNHNR 79
P++ L L VY+ +R
Sbjct: 101 PYSELGGKTLVMAVYDFDR 119
>pdb|3F00|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain With
Cu(Ii)
Length = 143
Score = 37.7 bits (86), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 34/59 (57%), Gaps = 3/59 (5%)
Query: 270 QMRYLFVRVVKARDLPSKDVTGSLDPFVEVKV---GNYKGITKYYEKKQNPEWNEVFAF 325
Q L V +++A +LP+ D+ G+ DP+V+V + K TK + K NP +NE F F
Sbjct: 32 QNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTF 90
Score = 37.4 bits (85), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 49/93 (52%), Gaps = 6/93 (6%)
Query: 440 VNVMEAQDLVISDKNRFPDAYVKVQI---GNQVLKTKSVQSRTLNPVWNEDMMFVA--SE 494
V +++A +L D D YVKV + + +TK V +TLNPV+NE F SE
Sbjct: 38 VGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETK-VHRKTLNPVFNEQFTFKVPYSE 96
Query: 495 PFEDHLILTVEDRVGPNKDETIGKVVIPLHSVE 527
L++ V D +K + IG+ +P+++V+
Sbjct: 97 LGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVD 129
Score = 35.4 bits (80), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 41/79 (51%), Gaps = 6/79 (7%)
Query: 5 KLGVEVVSAYELMPKDGQGSSNAFVELHF---DGQKFRTTTKEKDLTPVWNESFYFNISD 61
+L V ++ A EL D G+S+ +V++ +KF T K L PV+NE F F +
Sbjct: 35 QLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKV-- 92
Query: 62 PHN-LSNLALDAYVYNHNR 79
P++ L L VY+ +R
Sbjct: 93 PYSELGGKTLVMAVYDFDR 111
>pdb|1BYN|A Chain A, Solution Structure Of The Calcium-Bound First C2-Domain Of
Synaptotagmin I
pdb|2K8M|A Chain A, S100a13-C2a Binary Complex Structure
pdb|2K8M|D Chain D, S100a13-C2a Binary Complex Structure
pdb|2K45|A Chain A, C2a Domain Of Synaptototagmin I Solution Structure In The
Fgf-1-C2a Binary Complex: Key Component In The
Fibroblast Growthfactor Non-Classical Pathway
pdb|2K4A|A Chain A, Fgf-1-C2a Binary Complex Structure: A Key Component In The
Fibroblast Growthfactor Non-Classical Pathway
pdb|2KI6|A Chain A, The Fgf1-S100a13-C2a Hetero-Hexameric Complex Structure: A
C In The Non-Classical Pathway For Fgf1 Secretion
pdb|2KI6|F Chain F, The Fgf1-S100a13-C2a Hetero-Hexameric Complex Structure: A
C In The Non-Classical Pathway For Fgf1 Secretion
Length = 128
Score = 37.4 bits (85), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 36/64 (56%), Gaps = 5/64 (7%)
Query: 265 YDLVEQMRYLFVRVVKARDLPSKDVTGSLDPFVEVKV---GNYKGITKYYEKKQNPEWNE 321
YD Q L V +++A +LP+ D+ G+ DP+V+V + K TK + K NP +NE
Sbjct: 12 YDF--QNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNE 69
Query: 322 VFAF 325
F F
Sbjct: 70 QFTF 73
Score = 37.0 bits (84), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 49/93 (52%), Gaps = 6/93 (6%)
Query: 440 VNVMEAQDLVISDKNRFPDAYVKVQI---GNQVLKTKSVQSRTLNPVWNEDMMFVA--SE 494
V +++A +L D D YVKV + + +TK V +TLNPV+NE F SE
Sbjct: 21 VGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETK-VHRKTLNPVFNEQFTFKVPYSE 79
Query: 495 PFEDHLILTVEDRVGPNKDETIGKVVIPLHSVE 527
L++ V D +K + IG+ +P+++V+
Sbjct: 80 LGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVD 112
Score = 35.0 bits (79), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 41/79 (51%), Gaps = 6/79 (7%)
Query: 5 KLGVEVVSAYELMPKDGQGSSNAFVELHF---DGQKFRTTTKEKDLTPVWNESFYFNISD 61
+L V ++ A EL D G+S+ +V++ +KF T K L PV+NE F F +
Sbjct: 18 QLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKV-- 75
Query: 62 PHN-LSNLALDAYVYNHNR 79
P++ L L VY+ +R
Sbjct: 76 PYSELGGKTLVMAVYDFDR 94
>pdb|3N5A|A Chain A, Synaptotagmin-7, C2b-Domain, Calcium Bound
Length = 138
Score = 37.4 bits (85), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 53/103 (51%), Gaps = 6/103 (5%)
Query: 429 VYHSPRLWYVRVNVMEAQDLVISDKNRFPDAYVKVQI----GNQVLKTKSVQSRTLNPVW 484
+ ++P + VN+++A++L D D YVKV + K + R LNP++
Sbjct: 9 LCYNPSANSIIVNIIKARNLKAMDIGGTSDPYVKVWLMYKDKRVEKKKTVTKKRNLNPIF 68
Query: 485 NEDMMF-VASEPF-EDHLILTVEDRVGPNKDETIGKVVIPLHS 525
NE F + +E E +I+TV D+ ++++ IGK+ + S
Sbjct: 69 NESFAFDIPTEKLRETTIIITVMDKDKLSRNDVIGKIYLSWKS 111
Score = 33.5 bits (75), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 34/58 (58%), Gaps = 7/58 (12%)
Query: 274 LFVRVVKARDLPSKDVTGSLDPFVEVKVGNYKG------ITKYYEKKQNPEWNEVFAF 325
+ V ++KAR+L + D+ G+ DP+V+V + YK T ++ NP +NE FAF
Sbjct: 18 IIVNIIKARNLKAMDIGGTSDPYVKVWLM-YKDKRVEKKKTVTKKRNLNPIFNESFAF 74
>pdb|1V27|A Chain A, Solution Structure Of The First C2 Domain Of Rim2
Length = 141
Score = 37.4 bits (85), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 51/113 (45%), Gaps = 11/113 (9%)
Query: 274 LFVRVVKARDLPSKDVTGSLDPFVEV-----KVGNYKGITKYYEKKQNPEWNEVFAFS-- 326
L V ++ A+DLPS++ +P+V++ + K TK +K P+WN+ F +S
Sbjct: 23 LIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPV 82
Query: 327 -RERIQSSVLEVAXXXXXXXXXXYVGLVRFDLNEVPTRVPPDSPLAAEWYRLE 378
R + +LE+ + L E+ T + D P WY+L+
Sbjct: 83 HRREFRERMLEITLWDQARVREEESEFLGEILIELETALLDDEP---HWYKLQ 132
>pdb|2BWQ|A Chain A, Crystal Structure Of The Rim2 C2a-Domain At 1.4 Angstrom
Resolution
Length = 129
Score = 37.0 bits (84), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 51/113 (45%), Gaps = 11/113 (9%)
Query: 274 LFVRVVKARDLPSKDVTGSLDPFVEV-----KVGNYKGITKYYEKKQNPEWNEVFAFS-- 326
L V ++ A+DLPS++ +P+V++ + K TK +K P+WN+ F +S
Sbjct: 20 LIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPV 79
Query: 327 -RERIQSSVLEVAXXXXXXXXXXYVGLVRFDLNEVPTRVPPDSPLAAEWYRLE 378
R + +LE+ + L E+ T + D P WY+L+
Sbjct: 80 HRREFRERMLEITLWDQARVREEESEFLGEILIELETALLDDEP---HWYKLQ 129
>pdb|1W15|A Chain A, Rat Synaptotagmin 4 C2b Domain In The Presence Of Calcium
pdb|1W16|A Chain A, Rat Synaptotagmin 4 C2b Domain In The Absence Of Calcium
Length = 153
Score = 36.2 bits (82), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 33/57 (57%), Gaps = 5/57 (8%)
Query: 274 LFVRVVKARDLPSKDVTGSLDPFVEVKVGNYK---GITKYYEKKQNPE--WNEVFAF 325
L V V+KAR LP DV+G DP+V+V + + K K + KK P +NE+F F
Sbjct: 32 LTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVF 88
Score = 32.0 bits (71), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 49/90 (54%), Gaps = 10/90 (11%)
Query: 440 VNVMEAQDLVISDKNRFPDAYVKVQI---GNQVLKTKS-VQSRTLNPVWNEDMMFVASEP 495
V V++A+ L SD + D YVKV + ++ K K+ V+ T N V+NE +FV P
Sbjct: 34 VVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNE--LFVFDIP 91
Query: 496 FEDHLILTVE----DRVGPNKDETIGKVVI 521
E ++VE D +++E IG++V+
Sbjct: 92 CESLEEISVEFLVLDSERGSRNEVIGRLVL 121
>pdb|1A25|A Chain A, C2 Domain From Protein Kinase C (Beta)
pdb|1A25|B Chain B, C2 Domain From Protein Kinase C (Beta)
Length = 149
Score = 35.8 bits (81), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 43/90 (47%), Gaps = 8/90 (8%)
Query: 6 LGVEVVSAYELMPKDGQGSSNAFVELHF-----DGQKFRTTTKEKDLTPVWNESFYFNIS 60
L V V A L+P D G S+ +V+L K +T T + L P WNE+F F +
Sbjct: 33 LIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLK 92
Query: 61 DPHNLSNLALDAYVYNHNRTTNSKSFLGKV 90
+ L+++ + ++ T+ F+G +
Sbjct: 93 ESDKDRRLSVEIWDWD---LTSRNDFMGSL 119
Score = 35.4 bits (80), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 53/109 (48%), Gaps = 12/109 (11%)
Query: 440 VNVMEAQDLVISDKNRFPDAYVKVQI-----GNQVLKTKSVQSRTLNPVWNEDMMFVASE 494
V V +A++LV D N D YVK+++ KTK+++ +LNP WNE F E
Sbjct: 35 VVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKC-SLNPEWNETFRFQLKE 93
Query: 495 PFED-HLILTVEDRVGPNKDETIGKVVIPLHSVEKRADDRIVHTRWFNL 542
+D L + + D ++++ +G + + ++K D WF L
Sbjct: 94 SDKDRRLSVEIWDWDLTSRNDFMGSLSFGISELQKAGVD-----GWFKL 137
Score = 35.0 bits (79), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 29/57 (50%), Gaps = 5/57 (8%)
Query: 274 LFVRVVKARDLPSKDVTGSLDPFVEVKV-----GNYKGITKYYEKKQNPEWNEVFAF 325
L V V A++L D G DP+V++K+ K TK + NPEWNE F F
Sbjct: 33 LIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRF 89
>pdb|1DJG|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Lanthanum
pdb|1DJG|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Lanthanum
pdb|1DJH|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Barium
pdb|1DJH|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Barium
pdb|1DJI|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Calcium
pdb|1DJI|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Calcium
pdb|1DJW|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-2-Methylene-1,2-Cyclic-
Monophosphonate
pdb|1DJW|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-2-Methylene-1,2-Cyclic-
Monophosphonate
pdb|1DJX|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-1,4,5-Trisphosphate
pdb|1DJX|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-1,4,5-Trisphosphate
pdb|1DJY|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-2,4,5-Trisphosphate
pdb|1DJY|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-2,4,5-Trisphosphate
pdb|1DJZ|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-4,5-Bisphosphate
pdb|1DJZ|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-4,5-Bisphosphate
pdb|2ISD|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
pdb|2ISD|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Length = 624
Score = 35.4 bits (80), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 56/120 (46%), Gaps = 9/120 (7%)
Query: 438 VRVNVMEAQDL--VISDKNRFPDAYVKVQIGNQVLKTKSVQSRTL-----NPVWNEDMMF 490
+RV ++ Q L V +KN D V V+I T S Q+ + NP W+ + F
Sbjct: 499 LRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEF 558
Query: 491 VASEPFEDHLILTVEDRVGPNKDETIGKVVIPLHSVEKRADDRIVHTRWFNLEKSVSAAL 550
+ P + VED +K++ IG+ IP +S+++ R VH N ++ SA L
Sbjct: 559 EVTVPDLALVRFMVEDYDSSSKNDFIGQSTIPWNSLKQGY--RHVHLLSKNGDQHPSATL 616
>pdb|1QAS|A Chain A, 1-Phosphatidylinositol-4,5-Bisphosphate Phosphodiesterase
Delta 1
pdb|1QAS|B Chain B, 1-Phosphatidylinositol-4,5-Bisphosphate Phosphodiesterase
Delta 1
pdb|1QAT|A Chain A, 1-Phosphatidylinositol-4,5-Bisphosphate Phosphodiesterase
Delta Complex With Samarium (Iii) Chloride
pdb|1QAT|B Chain B, 1-Phosphatidylinositol-4,5-Bisphosphate Phosphodiesterase
Delta Complex With Samarium (Iii) Chloride
Length = 622
Score = 35.4 bits (80), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 56/120 (46%), Gaps = 9/120 (7%)
Query: 438 VRVNVMEAQDL--VISDKNRFPDAYVKVQIGNQVLKTKSVQSRTL-----NPVWNEDMMF 490
+RV ++ Q L V +KN D V V+I T S Q+ + NP W+ + F
Sbjct: 497 LRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEF 556
Query: 491 VASEPFEDHLILTVEDRVGPNKDETIGKVVIPLHSVEKRADDRIVHTRWFNLEKSVSAAL 550
+ P + VED +K++ IG+ IP +S+++ R VH N ++ SA L
Sbjct: 557 EVTVPDLALVRFMVEDYDSSSKNDFIGQSTIPWNSLKQGY--RHVHLLSKNGDQHPSATL 614
>pdb|1UGK|A Chain A, Solution Structure Of The First C2 Domain Of Synaptotagmin
Iv From Human Fetal Brain (Kiaa1342)
Length = 138
Score = 34.7 bits (78), Expect = 0.30, Method: Composition-based stats.
Identities = 29/97 (29%), Positives = 48/97 (49%), Gaps = 12/97 (12%)
Query: 440 VNVMEAQDLVISDKNRF-PDAYVKVQI---GNQVLKTKSVQSRTLNPVWNEDMMF----- 490
VN+ EA+ L D+ D Y+K+ I +KT+ V +TL+P ++E F
Sbjct: 26 VNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTR-VLRKTLDPAFDETFTFYGIPY 84
Query: 491 VASEPFEDHLILTVEDRVGPNKDETIGKVVIPLHSVE 527
+ H + DR ++D+ IG+V+IPL +E
Sbjct: 85 TQIQELALHFTILSFDRF--SRDDIIGEVLIPLSGIE 119
>pdb|1CJY|A Chain A, Human Cytosolic Phospholipase A2
pdb|1CJY|B Chain B, Human Cytosolic Phospholipase A2
Length = 749
Score = 34.7 bits (78), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 36/83 (43%), Gaps = 3/83 (3%)
Query: 276 VRVVKARDLPSKDVTGSLDPFVEVKVG---NYKGITKYYEKKQNPEWNEVFAFSRERIQS 332
+R K D+ + DP+VE+ + + + T+++ NP WNE F F + Q
Sbjct: 25 LRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQE 84
Query: 333 SVLEVAXXXXXXXXXXYVGLVRF 355
+VLE+ +G F
Sbjct: 85 NVLEITLMDANYVMDETLGTATF 107
Score = 30.0 bits (66), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 35/73 (47%), Gaps = 3/73 (4%)
Query: 457 PDAYVKVQIGNQVLKTKSVQ--SRTLNPVWNEDMMFVASEPFEDHLILTVEDRVGPNKDE 514
PD YV++ I K + + +NPVWNE F+ E+ L +T+ D DE
Sbjct: 42 PDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMD-ANYVMDE 100
Query: 515 TIGKVVIPLHSVE 527
T+G + S++
Sbjct: 101 TLGTATFTVSSMK 113
>pdb|1WFJ|A Chain A, C2 Domain-Containing Protein From Putative Elicitor-
Responsive Gene
Length = 136
Score = 34.3 bits (77), Expect = 0.32, Method: Composition-based stats.
Identities = 20/69 (28%), Positives = 31/69 (44%), Gaps = 1/69 (1%)
Query: 458 DAYVKVQIGNQVLKTKSVQSRTLNPVWNEDMMFVASEPFEDHLILTVEDRVGPNKDETIG 517
D YV++ Q K+ + P WNE +F SE + + VG +D+ +G
Sbjct: 32 DPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVSEGTTELKAKIFDKDVG-TEDDAVG 90
Query: 518 KVVIPLHSV 526
+ IPL V
Sbjct: 91 EATIPLEPV 99
Score = 31.2 bits (69), Expect = 3.5, Method: Composition-based stats.
Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Query: 274 LFVRVVKARDLPSKDVTGSLDPFVEVKVGNYKGITKYYEKK-QNPEWNEVFAFS 326
L V +V A+ L D ++DP+V++ + E PEWNE F F+
Sbjct: 12 LEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFT 65
Score = 30.8 bits (68), Expect = 4.4, Method: Composition-based stats.
Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Query: 3 HLKLGVEVVSAYELMPKDGQGSSNAFVELHFDGQKFRTTTKE-KDLTPVWNESFYFNISD 61
H L V +VSA L D + + +V+L Q ++ E TP WNE+F F +S+
Sbjct: 9 HGTLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVSE 68
>pdb|1BCI|A Chain A, C2 Domain Of Cytosolic Phospholipase A2, Nmr, Minimized
Average Structure
Length = 138
Score = 33.9 bits (76), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
Query: 276 VRVVKARDLPSKDVTGSLDPFVEVKVG---NYKGITKYYEKKQNPEWNEVFAFSRERIQS 332
+R K D+ + DP+VE+ + + + T+++ NP WNE F F + Q
Sbjct: 25 LRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQE 84
Query: 333 SVLEVA 338
+VLE+
Sbjct: 85 NVLEIT 90
>pdb|2JQZ|A Chain A, Solution Structure Of The C2 Domain Of Human Smurf2
Length = 131
Score = 33.9 bits (76), Expect = 0.51, Method: Composition-based stats.
Identities = 30/95 (31%), Positives = 44/95 (46%), Gaps = 13/95 (13%)
Query: 4 LKLGVEVVSAYELMPKDGQGSSNAFVELHFDG--QKFRTTTKEKDLTPVWNESF--YFNI 59
+KL + V+ A L+ KD + F ++ DG Q T T + L P WN+ + Y
Sbjct: 3 VKLRLTVLCAKNLVKKDFFRLPDPFAKVVVDGSGQCHSTDTVKNTLDPKWNQHYDLYIGK 62
Query: 60 SDPHNLSNLALDAYVYNHNRTTNSK--SFLGKVRL 92
SD +S V+NH + + FLG VRL
Sbjct: 63 SDSVTIS-------VWNHKKIHKKQGAGFLGCVRL 90
>pdb|1RLW|A Chain A, Calcium-Phospholipid Binding Domain From Cytosolic
Phospholipase A2
Length = 126
Score = 33.9 bits (76), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 36/83 (43%), Gaps = 3/83 (3%)
Query: 276 VRVVKARDLPSKDVTGSLDPFVEVKVG---NYKGITKYYEKKQNPEWNEVFAFSRERIQS 332
+R K D+ + DP+VE+ + + + T+++ NP WNE F F + Q
Sbjct: 10 LRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQE 69
Query: 333 SVLEVAXXXXXXXXXXYVGLVRF 355
+VLE+ +G F
Sbjct: 70 NVLEITLMDANYVMDETLGTATF 92
>pdb|1TJM|A Chain A, Crystallographic Identification Of Sr2+ Coordination Site
In Synaptotagmin I C2b Domain
pdb|1UOV|A Chain A, Calcium Binding Domain C2b
pdb|1UOW|A Chain A, Calcium Binding Domain C2b
pdb|1TJX|A Chain A, Crystallographic Identification Of Ca2+ Coordination Sites
In Synaptotagmin I C2b Domain
Length = 159
Score = 33.1 bits (74), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 49/103 (47%), Gaps = 10/103 (9%)
Query: 431 HSPRLWYVRVNVMEAQDLVISDKNRFPDAYVKVQIGNQ----VLKTKSVQSRTLNPVWNE 486
+ P + V ++EA++L D D YVK+ + K +++ TLNP +NE
Sbjct: 20 YVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNE 79
Query: 487 DMMFVASEPFED----HLILTVEDRVGPNKDETIGKVVIPLHS 525
F PFE +++TV D K++ IGKV + +S
Sbjct: 80 SFSF--EVPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNS 120
>pdb|1K5W|A Chain A, Three-Dimensional Structure Of The Synaptotagmin 1 C2b-
Domain: Synaptotagmin 1 As A Phospholipid Binding
Machine
Length = 152
Score = 32.7 bits (73), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 49/103 (47%), Gaps = 10/103 (9%)
Query: 431 HSPRLWYVRVNVMEAQDLVISDKNRFPDAYVKVQIGNQ----VLKTKSVQSRTLNPVWNE 486
+ P + V ++EA++L D D YVK+ + K +++ TLNP +NE
Sbjct: 13 YVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNE 72
Query: 487 DMMFVASEPFED----HLILTVEDRVGPNKDETIGKVVIPLHS 525
F PFE +++TV D K++ IGKV + +S
Sbjct: 73 SFSF--EVPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNS 113
>pdb|2LHA|A Chain A, Solution Structure Of C2b With Ip6
Length = 151
Score = 32.7 bits (73), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 49/103 (47%), Gaps = 10/103 (9%)
Query: 431 HSPRLWYVRVNVMEAQDLVISDKNRFPDAYVKVQIGNQ----VLKTKSVQSRTLNPVWNE 486
+ P + V ++EA++L D D YVK+ + K +++ TLNP +NE
Sbjct: 12 YVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNE 71
Query: 487 DMMFVASEPFED----HLILTVEDRVGPNKDETIGKVVIPLHS 525
F PFE +++TV D K++ IGKV + +S
Sbjct: 72 SFSF--EVPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNS 112
>pdb|3PYC|A Chain A, Crystal Structure Of Human Smurf1 C2 Domain
Length = 132
Score = 31.6 bits (70), Expect = 2.4, Method: Composition-based stats.
Identities = 29/105 (27%), Positives = 45/105 (42%), Gaps = 13/105 (12%)
Query: 4 LKLGVEVVSAYELMPKDGQGSSNAFVELHFDG--QKFRTTTKEKDLTPVWNESF--YFNI 59
+K+ + V+ A L KD + F ++ DG Q T T + L P WN+ + Y
Sbjct: 5 IKIRLTVLCAKNLAKKDFFRLPDPFAKIVVDGSGQCHSTDTVKNTLDPKWNQHYDLYVGK 64
Query: 60 SDPHNLSNLALDAYVYNHNRTTNSK--SFLGKVRLTGTSFVPYSD 102
+D +S V+NH + + FLG VRL + D
Sbjct: 65 TDSITIS-------VWNHKKIHKKQGAGFLGCVRLLSNAISRLKD 102
>pdb|2DMG|A Chain A, Solution Structure Of The Third C2 Domain Of Kiaa1228
Protein
Length = 142
Score = 30.0 bits (66), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Query: 39 RTTTKEKDLTPVWNESFYFNISDPHNLSNLALDAYVYNHNR-TTNSKSFLGKV 90
+T +K L PV+++SF F++S P + LD V N + K LGKV
Sbjct: 63 KTHVSKKTLNPVFDQSFDFSVSLPE-VQRRTLDVAVKNSGGFLSKDKGLLGKV 114
>pdb|3Q7G|A Chain A, Crystal Structure Of E2 Domain Of Human Amyloid
Precursor-Like Protein 1 In Complex With Sos (Sucrose
Octasulfate)
pdb|3Q7G|B Chain B, Crystal Structure Of E2 Domain Of Human Amyloid
Precursor-Like Protein 1 In Complex With Sos (Sucrose
Octasulfate)
pdb|3Q7L|A Chain A, Crystal Structure Of The E2 Domain Of Amyloid
Precursor-Like Protein 1
pdb|3Q7L|B Chain B, Crystal Structure Of The E2 Domain Of Amyloid
Precursor-Like Protein 1
pdb|3QMK|A Chain A, Crystal Structure Of The E2 Domain Of Aplp1 In Complex
With Heparin Hexasaccharide
pdb|3QMK|B Chain B, Crystal Structure Of The E2 Domain Of Aplp1 In Complex
With Heparin Hexasaccharide
Length = 214
Score = 30.0 bits (66), Expect = 7.4, Method: Composition-based stats.
Identities = 15/50 (30%), Positives = 30/50 (60%), Gaps = 3/50 (6%)
Query: 548 AALDGDNAKKDKFSSRLHLRVC---LDGGYHVLDESTHYSSDLRPTAKQL 594
AA+D + A++ +F HL+V ++ +LD++ H + +LRP ++L
Sbjct: 155 AAVDPEKAQQMRFQVHTHLQVIEERVNQSLGLLDQNPHLAQELRPQIQEL 204
>pdb|3PMR|A Chain A, Crystal Structure Of E2 Domain Of Human Amyloid
Precursor-Like Protein 1
pdb|3PMR|B Chain B, Crystal Structure Of E2 Domain Of Human Amyloid
Precursor-Like Protein 1
Length = 219
Score = 30.0 bits (66), Expect = 7.4, Method: Composition-based stats.
Identities = 15/50 (30%), Positives = 30/50 (60%), Gaps = 3/50 (6%)
Query: 548 AALDGDNAKKDKFSSRLHLRVC---LDGGYHVLDESTHYSSDLRPTAKQL 594
AA+D + A++ +F HL+V ++ +LD++ H + +LRP ++L
Sbjct: 155 AAVDPEKAQQMRFQVHTHLQVIEERVNQSLGLLDQNPHLAQELRPQIQEL 204
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,395,057
Number of Sequences: 62578
Number of extensions: 1205144
Number of successful extensions: 2686
Number of sequences better than 100.0: 47
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 2530
Number of HSP's gapped (non-prelim): 139
length of query: 1008
length of database: 14,973,337
effective HSP length: 108
effective length of query: 900
effective length of database: 8,214,913
effective search space: 7393421700
effective search space used: 7393421700
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)