Query 001830
Match_columns 1008
No_of_seqs 648 out of 4361
Neff 9.3
Searched_HMMs 46136
Date Fri Mar 29 10:19:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001830.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001830hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF08372 PRT_C: Plant phosphor 100.0 7.3E-40 1.6E-44 305.1 15.0 156 853-1008 1-156 (156)
2 COG5038 Ca2+-dependent lipid-b 100.0 2.2E-35 4.7E-40 341.8 44.3 553 4-729 436-1161(1227)
3 KOG1028 Ca2+-dependent phospho 99.9 1.8E-26 3.8E-31 259.0 25.0 225 257-525 154-393 (421)
4 KOG1028 Ca2+-dependent phospho 99.9 1.2E-26 2.6E-31 260.3 23.2 231 3-381 166-408 (421)
5 COG5038 Ca2+-dependent lipid-b 99.9 1.1E-24 2.3E-29 253.5 34.8 397 269-731 433-842 (1227)
6 KOG1326 Membrane-associated pr 99.9 4.5E-25 9.8E-30 251.3 21.4 600 4-728 206-1021(1105)
7 KOG2059 Ras GTPase-activating 99.9 3.3E-22 7.1E-27 220.6 16.8 244 4-396 5-276 (800)
8 cd04022 C2A_MCTP_PRT_plant C2 99.9 4.8E-22 1E-26 188.2 14.4 127 5-131 1-127 (127)
9 cd04019 C2C_MCTP_PRT_plant C2 99.9 3.3E-21 7.1E-26 186.0 16.9 150 437-589 1-150 (150)
10 cd08379 C2D_MCTP_PRT_plant C2 99.9 5.5E-21 1.2E-25 177.4 15.6 124 601-724 1-125 (126)
11 KOG2059 Ras GTPase-activating 99.9 2.9E-21 6.4E-26 213.1 15.9 248 437-732 6-279 (800)
12 cd04016 C2_Tollip C2 domain pr 99.9 1.3E-20 2.7E-25 173.8 15.1 118 600-728 2-121 (121)
13 cd04016 C2_Tollip C2 domain pr 99.8 2.3E-20 5.1E-25 172.1 14.9 119 4-129 2-121 (121)
14 cd08682 C2_Rab11-FIP_classI C2 99.8 1.5E-20 3.2E-25 177.7 13.8 121 6-127 1-125 (126)
15 cd08379 C2D_MCTP_PRT_plant C2 99.8 9.4E-20 2E-24 169.1 14.2 116 5-125 1-125 (126)
16 cd08682 C2_Rab11-FIP_classI C2 99.8 3.2E-19 7E-24 168.6 13.7 118 602-727 1-126 (126)
17 cd08395 C2C_Munc13 C2 domain t 99.8 2.4E-19 5.2E-24 164.9 12.2 107 5-114 1-114 (120)
18 cd08378 C2B_MCTP_PRT_plant C2 99.8 4.2E-19 9.1E-24 165.6 14.1 116 5-130 1-120 (121)
19 KOG1030 Predicted Ca2+-depende 99.8 1.3E-19 2.9E-24 168.8 10.1 95 1-100 3-97 (168)
20 cd08378 C2B_MCTP_PRT_plant C2 99.8 5.6E-19 1.2E-23 164.8 14.3 119 274-396 2-120 (121)
21 cd04019 C2C_MCTP_PRT_plant C2 99.8 6.5E-19 1.4E-23 170.0 14.7 138 601-746 1-150 (150)
22 KOG1030 Predicted Ca2+-depende 99.8 2.5E-19 5.3E-24 167.0 10.7 117 598-726 4-120 (168)
23 cd04015 C2_plant_PLD C2 domain 99.8 1.3E-18 2.8E-23 169.9 16.4 124 599-728 6-157 (158)
24 cd04042 C2A_MCTP_PRT C2 domain 99.8 1.1E-18 2.4E-23 163.7 15.3 119 5-130 1-120 (121)
25 cd08401 C2A_RasA2_RasA3 C2 dom 99.8 8.3E-19 1.8E-23 163.6 13.8 118 6-129 2-121 (121)
26 cd04010 C2B_RasA3 C2 domain se 99.8 7E-19 1.5E-23 168.5 12.9 108 5-115 1-125 (148)
27 cd08401 C2A_RasA2_RasA3 C2 dom 99.8 2.5E-18 5.5E-23 160.3 15.4 119 602-728 2-121 (121)
28 cd04042 C2A_MCTP_PRT C2 domain 99.8 3E-18 6.4E-23 160.9 15.4 118 602-729 2-120 (121)
29 cd04033 C2_NEDD4_NEDD4L C2 dom 99.8 2E-18 4.3E-23 165.3 13.7 120 5-129 1-132 (133)
30 cd08381 C2B_PI3K_class_II C2 d 99.8 1.4E-18 3E-23 162.4 12.0 105 3-110 12-121 (122)
31 cd04027 C2B_Munc13 C2 domain s 99.8 2.9E-18 6.3E-23 162.0 14.2 117 4-127 1-127 (127)
32 cd04046 C2_Calpain C2 domain p 99.8 4.9E-18 1.1E-22 160.2 15.7 121 3-132 2-124 (126)
33 cd04054 C2A_Rasal1_RasA4 C2 do 99.8 3.3E-18 7.1E-23 160.1 14.0 118 6-128 2-120 (121)
34 cd08677 C2A_Synaptotagmin-13 C 99.8 1.8E-18 3.8E-23 156.3 11.0 108 260-377 4-118 (118)
35 cd08681 C2_fungal_Inn1p-like C 99.8 3.3E-18 7.2E-23 160.0 13.3 117 4-129 1-118 (118)
36 cd08677 C2A_Synaptotagmin-13 C 99.8 1.5E-18 3.3E-23 156.7 10.5 91 3-98 13-107 (118)
37 cd08382 C2_Smurf-like C2 domai 99.8 4.8E-18 1E-22 159.5 13.6 118 5-127 1-122 (123)
38 cd04024 C2A_Synaptotagmin-like 99.8 6.2E-18 1.3E-22 160.9 14.1 122 4-129 1-128 (128)
39 cd08400 C2_Ras_p21A1 C2 domain 99.8 1.5E-17 3.3E-22 156.6 16.4 119 600-730 4-124 (126)
40 cd08377 C2C_MCTP_PRT C2 domain 99.8 1.3E-17 2.9E-22 156.3 15.2 118 4-129 1-118 (119)
41 cd08678 C2_C21orf25-like C2 do 99.8 9.7E-18 2.1E-22 158.4 14.3 118 6-131 1-121 (126)
42 cd04022 C2A_MCTP_PRT_plant C2 99.8 1.6E-17 3.4E-22 157.3 15.1 119 274-396 2-126 (127)
43 cd08381 C2B_PI3K_class_II C2 d 99.8 7E-18 1.5E-22 157.6 12.4 108 260-377 5-121 (122)
44 cd08393 C2A_SLP-1_2 C2 domain 99.8 5.1E-18 1.1E-22 159.6 11.4 106 3-111 14-125 (125)
45 cd04050 C2B_Synaptotagmin-like 99.8 7.4E-18 1.6E-22 153.6 12.0 103 5-114 1-104 (105)
46 cd04025 C2B_RasA1_RasA4 C2 dom 99.7 1.4E-17 3E-22 156.9 14.2 118 5-127 1-122 (123)
47 cd08400 C2_Ras_p21A1 C2 domain 99.7 2E-17 4.3E-22 155.8 15.2 120 3-131 3-124 (126)
48 cd08375 C2_Intersectin C2 doma 99.7 2.4E-17 5.3E-22 156.7 15.8 118 597-728 12-135 (136)
49 cd08392 C2A_SLP-3 C2 domain fi 99.7 6.3E-18 1.4E-22 158.7 11.6 106 3-110 14-127 (128)
50 cd08375 C2_Intersectin C2 doma 99.7 2.4E-17 5.1E-22 156.8 15.4 122 270-395 13-135 (136)
51 cd08678 C2_C21orf25-like C2 do 99.7 2.7E-17 5.8E-22 155.4 15.4 119 602-730 1-121 (126)
52 cd08681 C2_fungal_Inn1p-like C 99.7 1.4E-17 3E-22 155.8 13.0 117 272-395 1-118 (118)
53 cd08680 C2_Kibra C2 domain fou 99.7 7.9E-18 1.7E-22 156.4 11.0 106 3-110 13-124 (124)
54 cd08691 C2_NEDL1-like C2 domai 99.7 2.4E-17 5.2E-22 155.7 14.3 117 5-127 2-136 (137)
55 cd08377 C2C_MCTP_PRT C2 domain 99.7 3.5E-17 7.7E-22 153.4 15.4 118 600-728 1-118 (119)
56 PF04842 DUF639: Plant protein 99.7 2.1E-17 4.5E-22 185.8 15.6 179 799-1002 482-673 (683)
57 cd04017 C2D_Ferlin C2 domain f 99.7 2.3E-17 4.9E-22 157.7 13.8 124 4-131 1-133 (135)
58 cd08376 C2B_MCTP_PRT C2 domain 99.7 4E-17 8.7E-22 152.2 15.1 113 602-729 2-115 (116)
59 cd04028 C2B_RIM1alpha C2 domai 99.7 2E-17 4.4E-22 157.2 13.1 106 3-114 28-140 (146)
60 cd04028 C2B_RIM1alpha C2 domai 99.7 2.6E-17 5.5E-22 156.5 13.3 114 259-382 20-141 (146)
61 cd04029 C2A_SLP-4_5 C2 domain 99.7 1.4E-17 3E-22 156.3 11.4 106 3-111 14-125 (125)
62 cd08376 C2B_MCTP_PRT C2 domain 99.7 6.4E-17 1.4E-21 150.8 15.5 112 274-395 2-114 (116)
63 cd04036 C2_cPLA2 C2 domain pre 99.7 4.2E-17 9.1E-22 152.5 14.2 114 5-129 1-117 (119)
64 cd04014 C2_PKC_epsilon C2 doma 99.7 5.4E-17 1.2E-21 154.8 14.7 118 1-131 1-130 (132)
65 cd08394 C2A_Munc13 C2 domain f 99.7 3.3E-17 7.2E-22 149.3 12.6 100 4-113 2-102 (127)
66 cd04029 C2A_SLP-4_5 C2 domain 99.7 6.2E-17 1.3E-21 151.9 14.4 104 598-708 13-124 (125)
67 cd08388 C2A_Synaptotagmin-4-11 99.7 3.6E-17 7.7E-22 154.3 12.6 108 3-111 15-127 (128)
68 cd08685 C2_RGS-like C2 domain 99.7 2.2E-17 4.8E-22 153.2 10.8 104 3-110 11-119 (119)
69 cd04031 C2A_RIM1alpha C2 domai 99.7 3.6E-17 7.8E-22 154.8 12.1 106 3-111 15-125 (125)
70 cd08395 C2C_Munc13 C2 domain t 99.7 7.1E-17 1.5E-21 148.5 12.9 102 274-381 2-114 (120)
71 cd08393 C2A_SLP-1_2 C2 domain 99.7 5.5E-17 1.2E-21 152.6 12.1 112 260-378 5-125 (125)
72 cd08688 C2_KIAA0528-like C2 do 99.7 4E-17 8.6E-22 150.0 10.8 105 6-112 1-109 (110)
73 cd08391 C2A_C2C_Synaptotagmin_ 99.7 1.1E-16 2.4E-21 150.6 13.9 115 4-129 1-121 (121)
74 cd04033 C2_NEDD4_NEDD4L C2 dom 99.7 1.3E-16 2.9E-21 152.7 14.5 118 602-728 2-132 (133)
75 cd04024 C2A_Synaptotagmin-like 99.7 1.4E-16 3E-21 151.6 14.6 122 600-727 1-127 (128)
76 cd04054 C2A_Rasal1_RasA4 C2 do 99.7 1.8E-16 4E-21 148.3 15.1 117 602-727 2-120 (121)
77 cd08690 C2_Freud-1 C2 domain f 99.7 2E-16 4.4E-21 151.3 15.5 124 5-131 3-138 (155)
78 cd04041 C2A_fungal C2 domain f 99.7 4.4E-17 9.5E-22 150.0 10.4 104 4-112 1-108 (111)
79 cd08385 C2A_Synaptotagmin-1-5- 99.7 9E-17 2E-21 151.7 12.4 106 3-111 15-123 (124)
80 cd08394 C2A_Munc13 C2 domain f 99.7 1.5E-16 3.2E-21 145.0 13.2 102 271-380 1-102 (127)
81 cd08389 C2A_Synaptotagmin-14_1 99.7 8.1E-17 1.8E-21 151.1 11.8 107 3-112 15-124 (124)
82 cd04025 C2B_RasA1_RasA4 C2 dom 99.7 2.6E-16 5.6E-21 148.3 15.3 115 274-393 2-122 (123)
83 cd08680 C2_Kibra C2 domain fou 99.7 7.9E-17 1.7E-21 149.7 11.5 112 260-377 4-124 (124)
84 cd08392 C2A_SLP-3 C2 domain fi 99.7 1.1E-16 2.4E-21 150.4 12.5 115 260-378 5-128 (128)
85 cd04011 C2B_Ferlin C2 domain s 99.7 6.7E-17 1.5E-21 149.0 10.7 105 3-112 3-110 (111)
86 cd04039 C2_PSD C2 domain prese 99.7 8.5E-17 1.8E-21 146.3 11.1 94 4-100 1-98 (108)
87 cd08387 C2A_Synaptotagmin-8 C2 99.7 1.3E-16 2.7E-21 150.6 12.1 106 3-111 15-123 (124)
88 cd04020 C2B_SLP_1-2-3-4 C2 dom 99.7 1.4E-16 3E-21 156.2 12.6 108 3-112 26-138 (162)
89 cd04044 C2A_Tricalbin-like C2 99.7 1.9E-16 4.2E-21 149.7 13.2 119 4-130 2-123 (124)
90 cd04050 C2B_Synaptotagmin-like 99.7 1.8E-16 3.9E-21 144.4 11.9 102 274-380 2-103 (105)
91 cd08391 C2A_C2C_Synaptotagmin_ 99.7 3.8E-16 8.2E-21 147.0 14.3 114 272-394 1-120 (121)
92 KOG1326 Membrane-associated pr 99.7 6.1E-17 1.3E-21 185.6 10.6 400 271-695 205-703 (1105)
93 cd08386 C2A_Synaptotagmin-7 C2 99.7 1.7E-16 3.7E-21 150.1 12.0 107 3-111 15-124 (125)
94 cd04046 C2_Calpain C2 domain p 99.7 7.8E-16 1.7E-20 145.2 16.2 120 599-729 2-122 (126)
95 cd04015 C2_plant_PLD C2 domain 99.7 7.8E-16 1.7E-20 150.4 16.4 119 271-395 6-157 (158)
96 cd04036 C2_cPLA2 C2 domain pre 99.7 4.2E-16 9.1E-21 145.8 14.0 113 274-395 2-117 (119)
97 cd04043 C2_Munc13_fungal C2 do 99.7 7.8E-16 1.7E-20 145.8 15.3 117 4-131 1-122 (126)
98 cd04030 C2C_KIAA1228 C2 domain 99.7 2.9E-16 6.3E-21 149.1 12.4 107 3-111 15-127 (127)
99 cd04010 C2B_RasA3 C2 domain se 99.7 3.7E-16 8E-21 149.8 12.6 103 274-382 2-125 (148)
100 cd08387 C2A_Synaptotagmin-8 C2 99.7 6.5E-16 1.4E-20 145.7 14.0 104 598-709 14-123 (124)
101 cd08373 C2A_Ferlin C2 domain f 99.7 9.1E-16 2E-20 145.4 14.7 116 10-131 2-117 (127)
102 cd04044 C2A_Tricalbin-like C2 99.7 7.1E-16 1.5E-20 145.9 13.7 120 599-729 1-123 (124)
103 cd04017 C2D_Ferlin C2 domain f 99.7 1.5E-15 3.3E-20 145.1 16.0 121 273-397 2-133 (135)
104 cd04013 C2_SynGAP_like C2 doma 99.7 1.6E-15 3.4E-20 143.7 15.8 125 598-731 9-141 (146)
105 cd04018 C2C_Ferlin C2 domain t 99.7 3.6E-16 7.8E-21 150.0 11.6 105 5-112 1-125 (151)
106 cd08406 C2B_Synaptotagmin-12 C 99.7 3.9E-16 8.5E-21 147.8 11.6 92 3-96 14-110 (136)
107 cd04051 C2_SRC2_like C2 domain 99.7 3.8E-16 8.2E-21 147.6 11.6 118 5-125 1-125 (125)
108 cd04039 C2_PSD C2 domain prese 99.7 6E-16 1.3E-20 140.7 12.3 96 600-700 1-99 (108)
109 KOG1011 Neurotransmitter relea 99.7 9.7E-17 2.1E-21 174.0 8.2 120 3-129 294-423 (1283)
110 cd04014 C2_PKC_epsilon C2 doma 99.7 1.6E-15 3.5E-20 144.6 15.6 118 599-730 3-130 (132)
111 cd04011 C2B_Ferlin C2 domain s 99.7 9E-16 1.9E-20 141.5 13.0 103 271-379 3-110 (111)
112 cd04027 C2B_Munc13 C2 domain s 99.7 1.3E-15 2.8E-20 144.0 14.3 120 601-726 2-127 (127)
113 cd08688 C2_KIAA0528-like C2 do 99.7 5.2E-16 1.1E-20 142.6 11.3 101 602-709 1-108 (110)
114 PF11696 DUF3292: Protein of u 99.7 1.4E-15 3E-20 171.1 16.4 213 791-1005 82-390 (642)
115 cd04038 C2_ArfGAP C2 domain pr 99.7 1.4E-15 3E-20 145.5 14.1 90 4-99 2-91 (145)
116 cd04031 C2A_RIM1alpha C2 domai 99.7 6.8E-16 1.5E-20 146.1 11.7 111 260-378 6-125 (125)
117 cd08407 C2B_Synaptotagmin-13 C 99.7 5.1E-16 1.1E-20 146.7 10.6 92 3-96 14-112 (138)
118 cd08521 C2A_SLP C2 domain firs 99.6 8E-16 1.7E-20 145.2 11.8 105 3-110 13-123 (123)
119 cd08373 C2A_Ferlin C2 domain f 99.6 2.9E-15 6.3E-20 141.9 15.3 115 278-399 2-119 (127)
120 cd08675 C2B_RasGAP C2 domain s 99.6 8.6E-16 1.9E-20 146.5 11.6 106 6-114 1-122 (137)
121 cd08685 C2_RGS-like C2 domain 99.6 7.4E-16 1.6E-20 143.0 10.7 101 271-377 11-119 (119)
122 cd08385 C2A_Synaptotagmin-1-5- 99.6 1.3E-15 2.8E-20 143.7 12.4 112 260-378 6-123 (124)
123 cd04030 C2C_KIAA1228 C2 domain 99.6 1.5E-15 3.3E-20 144.1 12.7 112 260-378 6-127 (127)
124 cd08388 C2A_Synaptotagmin-4-11 99.6 1.9E-15 4E-20 142.6 13.0 114 260-378 6-127 (128)
125 cd08390 C2A_Synaptotagmin-15-1 99.6 1.2E-15 2.6E-20 143.9 11.8 107 3-112 13-123 (123)
126 cd04032 C2_Perforin C2 domain 99.6 1.2E-15 2.6E-20 142.0 11.4 91 4-98 28-118 (127)
127 cd04021 C2_E3_ubiquitin_ligase 99.6 2.1E-15 4.5E-20 141.8 13.1 117 4-127 2-124 (125)
128 cd08383 C2A_RasGAP C2 domain ( 99.6 2.7E-15 5.8E-20 140.2 13.7 115 6-129 2-117 (117)
129 cd08382 C2_Smurf-like C2 domai 99.6 3.6E-15 7.9E-20 140.0 14.5 114 274-393 2-122 (123)
130 cd08389 C2A_Synaptotagmin-14_1 99.6 2E-15 4.4E-20 141.6 11.9 111 260-378 6-123 (124)
131 cd04049 C2_putative_Elicitor-r 99.6 2.4E-15 5.3E-20 141.8 12.3 108 4-113 1-109 (124)
132 cd08676 C2A_Munc13-like C2 dom 99.6 1.5E-15 3.3E-20 145.8 11.0 98 3-110 27-153 (153)
133 cd04041 C2A_fungal C2 domain f 99.6 1.5E-15 3.3E-20 139.8 10.6 100 272-379 1-108 (111)
134 cd08407 C2B_Synaptotagmin-13 C 99.6 7.6E-16 1.6E-20 145.6 8.7 111 597-715 12-130 (138)
135 cd08386 C2A_Synaptotagmin-7 C2 99.6 3.8E-15 8.2E-20 140.9 12.5 112 260-378 6-124 (125)
136 cd08521 C2A_SLP C2 domain firs 99.6 6.1E-15 1.3E-19 139.2 13.9 104 598-708 12-123 (123)
137 cd04020 C2B_SLP_1-2-3-4 C2 dom 99.6 2.7E-15 5.9E-20 147.1 11.7 105 270-379 25-138 (162)
138 cd04018 C2C_Ferlin C2 domain t 99.6 5.6E-15 1.2E-19 141.8 13.4 110 274-383 2-129 (151)
139 cd04043 C2_Munc13_fungal C2 do 99.6 1.3E-14 2.8E-19 137.4 15.5 118 273-398 2-123 (126)
140 cd04013 C2_SynGAP_like C2 doma 99.6 7.6E-15 1.6E-19 139.0 13.4 118 4-131 11-140 (146)
141 cd04009 C2B_Munc13-like C2 dom 99.6 4E-15 8.7E-20 141.8 11.6 96 3-99 15-118 (133)
142 KOG1013 Synaptic vesicle prote 99.6 5.1E-16 1.1E-20 158.1 5.7 225 3-360 92-329 (362)
143 cd08408 C2B_Synaptotagmin-14_1 99.6 3.8E-15 8.2E-20 142.0 11.1 105 3-111 14-124 (138)
144 cd04051 C2_SRC2_like C2 domain 99.6 5.2E-15 1.1E-19 139.9 11.9 117 274-391 2-125 (125)
145 PLN03008 Phospholipase D delta 99.6 5.7E-15 1.2E-19 171.3 14.2 126 600-731 14-179 (868)
146 cd04032 C2_Perforin C2 domain 99.6 7.5E-15 1.6E-19 136.6 12.2 94 597-699 25-120 (127)
147 cd04040 C2D_Tricalbin-like C2 99.6 8.4E-15 1.8E-19 136.3 12.6 112 6-124 1-113 (115)
148 cd08406 C2B_Synaptotagmin-12 C 99.6 8.3E-15 1.8E-19 138.8 12.5 88 437-525 16-110 (136)
149 cd08384 C2B_Rabphilin_Doc2 C2 99.6 1.7E-15 3.6E-20 144.9 7.8 105 3-112 12-121 (133)
150 cd08404 C2B_Synaptotagmin-4 C2 99.6 2.3E-15 5.1E-20 144.2 8.7 106 3-113 14-124 (136)
151 cd04045 C2C_Tricalbin-like C2 99.6 7.3E-15 1.6E-19 136.8 11.7 103 4-113 1-104 (120)
152 cd08402 C2B_Synaptotagmin-1 C2 99.6 6E-15 1.3E-19 141.5 11.5 105 3-112 14-123 (136)
153 cd04049 C2_putative_Elicitor-r 99.6 9.2E-15 2E-19 137.9 12.5 103 600-710 1-108 (124)
154 cd08390 C2A_Synaptotagmin-15-1 99.6 1.1E-14 2.4E-19 137.3 13.1 113 260-379 4-123 (123)
155 cd08676 C2A_Munc13-like C2 dom 99.6 8.4E-15 1.8E-19 140.7 12.2 100 269-377 25-153 (153)
156 cd08690 C2_Freud-1 C2 domain f 99.6 2.8E-14 6E-19 136.7 15.3 118 602-729 4-137 (155)
157 cd04038 C2_ArfGAP C2 domain pr 99.6 1.3E-14 2.8E-19 138.8 12.5 91 599-698 1-91 (145)
158 cd08410 C2B_Synaptotagmin-17 C 99.6 9.2E-15 2E-19 139.5 11.4 107 3-113 13-124 (135)
159 KOG0696 Serine/threonine prote 99.6 1.1E-15 2.3E-20 159.9 4.6 106 3-113 179-289 (683)
160 cd04045 C2C_Tricalbin-like C2 99.6 1.7E-14 3.7E-19 134.4 12.2 103 600-711 1-104 (120)
161 cd08405 C2B_Synaptotagmin-7 C2 99.6 4.5E-15 9.7E-20 142.4 8.0 105 3-112 14-123 (136)
162 cd08383 C2A_RasGAP C2 domain ( 99.6 3.6E-14 7.7E-19 132.6 13.9 112 602-728 2-117 (117)
163 cd04037 C2E_Ferlin C2 domain f 99.6 1.5E-14 3.3E-19 135.7 11.3 90 5-98 1-92 (124)
164 cd08408 C2B_Synaptotagmin-14_1 99.6 5.3E-15 1.2E-19 141.0 7.8 115 260-382 5-128 (138)
165 cd04052 C2B_Tricalbin-like C2 99.6 1.5E-14 3.3E-19 133.1 10.5 101 21-131 9-110 (111)
166 cd08403 C2B_Synaptotagmin-3-5- 99.6 2E-14 4.4E-19 137.4 11.7 105 2-111 12-121 (134)
167 cd08692 C2B_Tac2-N C2 domain s 99.6 8.7E-15 1.9E-19 135.8 8.4 112 261-380 5-124 (135)
168 cd08675 C2B_RasGAP C2 domain s 99.6 2.4E-14 5.3E-19 136.5 11.5 103 274-382 1-123 (137)
169 cd08692 C2B_Tac2-N C2 domain s 99.6 5.8E-14 1.3E-18 130.3 13.6 91 435-526 13-110 (135)
170 cd08384 C2B_Rabphilin_Doc2 C2 99.5 1.1E-14 2.4E-19 139.2 8.9 113 261-382 4-124 (133)
171 cd04037 C2E_Ferlin C2 domain f 99.5 2.6E-14 5.6E-19 134.2 11.1 89 274-362 2-93 (124)
172 cd04026 C2_PKC_alpha_gamma C2 99.5 2.5E-14 5.4E-19 136.4 11.2 106 3-113 12-122 (131)
173 cd08404 C2B_Synaptotagmin-4 C2 99.5 1.5E-14 3.2E-19 138.7 9.6 104 598-711 13-124 (136)
174 cd04040 C2D_Tricalbin-like C2 99.5 5.5E-14 1.2E-18 130.8 13.1 112 602-724 1-114 (115)
175 cd08409 C2B_Synaptotagmin-15 C 99.5 2.7E-14 5.8E-19 136.5 11.0 91 3-96 14-109 (137)
176 cd08691 C2_NEDL1-like C2 domai 99.5 1.4E-13 3E-18 130.2 15.4 116 273-393 2-136 (137)
177 cd08410 C2B_Synaptotagmin-17 C 99.5 1.1E-14 2.5E-19 138.9 8.0 115 260-382 4-126 (135)
178 KOG0696 Serine/threonine prote 99.5 5.3E-15 1.1E-19 154.8 6.1 104 437-546 181-290 (683)
179 cd04021 C2_E3_ubiquitin_ligase 99.5 1.2E-13 2.6E-18 129.9 14.8 118 273-393 3-124 (125)
180 cd08686 C2_ABR C2 domain in th 99.5 7.5E-14 1.6E-18 125.7 12.4 81 6-96 1-92 (118)
181 cd00275 C2_PLC_like C2 domain 99.5 1E-13 2.2E-18 131.9 14.0 117 4-129 2-127 (128)
182 cd08402 C2B_Synaptotagmin-1 C2 99.5 1.3E-14 2.7E-19 139.3 7.7 114 260-382 5-126 (136)
183 KOG1013 Synaptic vesicle prote 99.5 3.4E-15 7.4E-20 152.2 3.9 225 259-525 82-328 (362)
184 cd08409 C2B_Synaptotagmin-15 C 99.5 1.4E-14 2.9E-19 138.5 7.7 114 260-381 5-126 (137)
185 cd04035 C2A_Rabphilin_Doc2 C2 99.5 4.8E-14 1E-18 132.8 11.4 97 3-101 14-115 (123)
186 cd04009 C2B_Munc13-like C2 dom 99.5 3.9E-14 8.5E-19 135.0 10.7 101 261-363 7-119 (133)
187 cd08405 C2B_Synaptotagmin-7 C2 99.5 2.1E-14 4.5E-19 137.8 8.0 114 260-382 5-126 (136)
188 cd00276 C2B_Synaptotagmin C2 d 99.5 2.6E-14 5.7E-19 137.2 8.5 107 2-113 12-123 (134)
189 cd04048 C2A_Copine C2 domain f 99.5 6.6E-14 1.4E-18 131.0 10.5 98 9-110 5-112 (120)
190 cd08686 C2_ABR C2 domain in th 99.5 3.9E-13 8.4E-18 121.1 14.3 98 602-708 1-107 (118)
191 cd04026 C2_PKC_alpha_gamma C2 99.5 1.5E-13 3.3E-18 131.0 12.5 113 261-383 6-125 (131)
192 cd00276 C2B_Synaptotagmin C2 d 99.5 4.1E-14 8.8E-19 135.8 8.0 105 598-712 12-124 (134)
193 cd04052 C2B_Tricalbin-like C2 99.5 2E-13 4.3E-18 125.6 11.3 101 289-397 9-110 (111)
194 cd08403 C2B_Synaptotagmin-3-5- 99.5 1.6E-13 3.5E-18 131.2 11.1 115 260-383 4-126 (134)
195 cd00275 C2_PLC_like C2 domain 99.5 1.1E-12 2.4E-17 124.8 14.9 115 273-395 3-127 (128)
196 cd04048 C2A_Copine C2 domain f 99.5 4.4E-13 9.5E-18 125.5 11.7 97 278-379 6-114 (120)
197 cd04035 C2A_Rabphilin_Doc2 C2 99.4 5.8E-13 1.2E-17 125.4 11.9 102 260-363 5-114 (123)
198 PLN03200 cellulose synthase-in 99.4 2.3E-13 5E-18 173.0 11.4 118 597-729 1977-2100(2102)
199 PLN03008 Phospholipase D delta 99.4 7.1E-13 1.5E-17 154.1 14.1 123 272-400 14-181 (868)
200 cd04047 C2B_Copine C2 domain s 99.4 4.4E-13 9.4E-18 123.5 9.3 90 7-98 3-99 (110)
201 PLN03200 cellulose synthase-in 99.4 8E-13 1.7E-17 168.3 11.6 117 4-130 1980-2100(2102)
202 KOG1328 Synaptic vesicle prote 99.4 1.2E-13 2.5E-18 152.9 0.7 123 4-131 114-302 (1103)
203 PF00168 C2: C2 domain; Inter 99.4 2.6E-12 5.7E-17 112.3 9.0 82 6-91 1-85 (85)
204 cd04047 C2B_Copine C2 domain s 99.4 5.7E-12 1.2E-16 116.1 11.4 87 276-363 4-101 (110)
205 PF00168 C2: C2 domain; Inter 99.3 1.6E-11 3.5E-16 107.3 10.4 81 274-354 1-85 (85)
206 PF06398 Pex24p: Integral pero 99.3 4.4E-11 9.5E-16 134.6 16.6 177 796-987 2-194 (359)
207 KOG1011 Neurotransmitter relea 99.2 1.1E-11 2.4E-16 135.3 8.1 120 272-399 295-427 (1283)
208 PLN02270 phospholipase D alpha 99.2 8.8E-11 1.9E-15 137.1 14.7 127 599-731 7-150 (808)
209 cd08374 C2F_Ferlin C2 domain s 99.2 7E-11 1.5E-15 109.9 10.4 95 5-100 1-124 (133)
210 cd00030 C2 C2 domain. The C2 d 99.1 2.3E-10 4.9E-15 103.3 10.6 101 6-110 1-102 (102)
211 cd08374 C2F_Ferlin C2 domain s 99.1 4.5E-10 9.8E-15 104.5 10.3 93 602-700 2-125 (133)
212 cd00030 C2 C2 domain. The C2 d 99.1 9.1E-10 2E-14 99.3 10.8 99 602-708 1-102 (102)
213 smart00239 C2 Protein kinase C 99.0 2.4E-09 5.1E-14 96.7 11.4 90 274-363 2-95 (101)
214 smart00239 C2 Protein kinase C 99.0 2.1E-09 4.4E-14 97.1 10.9 92 602-701 2-97 (101)
215 PLN02223 phosphoinositide phos 99.0 4.5E-09 9.7E-14 118.3 15.0 119 599-726 408-534 (537)
216 KOG1031 Predicted Ca2+-depende 99.0 2E-09 4.4E-14 116.6 10.5 120 600-729 3-136 (1169)
217 PLN02223 phosphoinositide phos 99.0 6.8E-09 1.5E-13 116.9 14.1 115 272-394 409-535 (537)
218 PLN02952 phosphoinositide phos 98.9 9.8E-09 2.1E-13 118.4 15.2 120 599-729 469-597 (599)
219 cd08689 C2_fungal_Pkc1p C2 dom 98.9 4.9E-09 1.1E-13 90.7 7.8 83 6-98 1-87 (109)
220 PLN02270 phospholipase D alpha 98.9 1.5E-08 3.2E-13 118.9 14.4 123 272-400 8-152 (808)
221 KOG1031 Predicted Ca2+-depende 98.9 6.7E-09 1.5E-13 112.7 9.7 122 4-129 3-135 (1169)
222 PLN02230 phosphoinositide phos 98.9 1.5E-08 3.3E-13 116.5 13.1 117 4-128 469-596 (598)
223 PLN02952 phosphoinositide phos 98.9 2.2E-08 4.7E-13 115.6 14.2 115 272-394 470-597 (599)
224 cd08689 C2_fungal_Pkc1p C2 dom 98.9 9.7E-09 2.1E-13 88.9 8.3 86 602-697 1-87 (109)
225 KOG0169 Phosphoinositide-speci 98.8 2.1E-08 4.7E-13 114.8 11.7 119 5-131 617-745 (746)
226 PLN02228 Phosphoinositide phos 98.8 4.6E-08 9.9E-13 112.2 14.3 124 599-731 430-563 (567)
227 PLN02222 phosphoinositide phos 98.8 5.9E-08 1.3E-12 111.6 15.2 121 599-728 451-580 (581)
228 PLN02230 phosphoinositide phos 98.8 4.4E-08 9.6E-13 112.8 13.8 121 599-728 468-597 (598)
229 KOG1328 Synaptic vesicle prote 98.8 2.7E-09 5.8E-14 119.0 2.7 94 4-98 947-1048(1103)
230 PLN02222 phosphoinositide phos 98.7 1.2E-07 2.7E-12 109.1 13.9 115 272-394 452-579 (581)
231 KOG1264 Phospholipase C [Lipid 98.7 7.8E-08 1.7E-12 108.7 11.1 102 600-713 1065-1174(1267)
232 KOG0169 Phosphoinositide-speci 98.7 1.1E-07 2.5E-12 108.9 12.5 120 601-729 617-744 (746)
233 PLN02228 Phosphoinositide phos 98.7 1.9E-07 4.1E-12 107.2 13.7 118 272-397 431-562 (567)
234 KOG1327 Copine [Signal transdu 98.7 2.1E-07 4.6E-12 103.8 13.0 180 469-698 42-236 (529)
235 KOG1264 Phospholipase C [Lipid 98.6 1E-07 2.2E-12 107.9 9.1 91 4-99 1065-1162(1267)
236 PLN02352 phospholipase D epsil 98.5 7E-07 1.5E-11 104.9 12.9 118 599-731 9-132 (758)
237 KOG1327 Copine [Signal transdu 98.5 1.5E-06 3.2E-11 97.3 13.5 179 306-528 43-236 (529)
238 KOG0905 Phosphoinositide 3-kin 98.4 2E-07 4.4E-12 109.7 4.6 112 259-379 1515-1635(1639)
239 KOG0905 Phosphoinositide 3-kin 98.2 1.1E-06 2.3E-11 103.8 5.2 109 3-113 1523-1636(1639)
240 PLN02352 phospholipase D epsil 98.2 1.1E-05 2.3E-10 95.1 12.8 118 272-400 10-134 (758)
241 cd08683 C2_C2cd3 C2 domain fou 98.1 4.9E-06 1.1E-10 74.4 6.5 107 602-708 1-143 (143)
242 cd08683 C2_C2cd3 C2 domain fou 98.0 9.5E-06 2.1E-10 72.6 5.6 105 6-110 1-143 (143)
243 PF12416 DUF3668: Cep120 prote 98.0 0.0051 1.1E-07 67.1 27.0 238 438-697 2-294 (340)
244 PF12416 DUF3668: Cep120 prote 97.9 0.0018 3.8E-08 70.6 22.5 246 274-529 2-296 (340)
245 KOG3837 Uncharacterized conser 97.8 1.4E-05 3E-10 84.9 4.1 125 4-131 367-504 (523)
246 cd08684 C2A_Tac2-N C2 domain f 97.6 4.4E-05 9.5E-10 63.2 3.4 95 275-376 2-102 (103)
247 cd08684 C2A_Tac2-N C2 domain f 97.6 0.0001 2.2E-09 61.1 4.6 95 439-541 2-102 (103)
248 KOG2060 Rab3 effector RIM1 and 97.4 0.00011 2.3E-09 77.9 3.7 107 3-113 268-380 (405)
249 PLN02964 phosphatidylserine de 97.3 0.0003 6.6E-09 82.7 6.3 86 271-363 53-140 (644)
250 PLN02964 phosphatidylserine de 97.3 0.00039 8.5E-09 81.8 6.6 88 598-700 52-141 (644)
251 KOG2060 Rab3 effector RIM1 and 96.8 0.00079 1.7E-08 71.5 3.0 111 267-382 264-382 (405)
252 KOG3837 Uncharacterized conser 96.8 0.0012 2.6E-08 70.5 4.1 120 599-729 366-503 (523)
253 PF15627 CEP76-C2: CEP76 C2 do 95.9 0.062 1.3E-06 51.3 10.1 128 3-131 8-151 (156)
254 KOG1265 Phospholipase C [Lipid 95.8 0.04 8.6E-07 64.8 9.6 109 4-128 703-821 (1189)
255 cd08398 C2_PI3K_class_I_alpha 95.8 0.052 1.1E-06 52.7 9.1 106 4-130 8-122 (158)
256 cd08693 C2_PI3K_class_I_beta_d 95.3 0.099 2.1E-06 51.9 9.4 91 4-96 8-119 (173)
257 PF15627 CEP76-C2: CEP76 C2 do 95.3 0.26 5.7E-06 47.1 11.7 125 599-729 8-150 (156)
258 PF08372 PRT_C: Plant phosphor 95.2 0.092 2E-06 50.3 8.4 59 800-859 62-120 (156)
259 KOG1452 Predicted Rho GTPase-a 95.0 0.054 1.2E-06 56.1 6.6 115 3-131 50-168 (442)
260 KOG1265 Phospholipase C [Lipid 95.0 0.11 2.5E-06 61.2 9.7 112 597-728 700-822 (1189)
261 cd08380 C2_PI3K_like C2 domain 94.6 0.18 3.9E-06 49.3 9.2 92 4-96 8-106 (156)
262 PF10358 NT-C2: N-terminal C2 94.6 0.93 2E-05 43.5 13.9 120 4-131 7-136 (143)
263 cd08398 C2_PI3K_class_I_alpha 94.4 0.36 7.9E-06 46.9 10.3 101 273-397 9-123 (158)
264 cd08687 C2_PKN-like C2 domain 94.1 0.44 9.6E-06 40.5 8.8 83 25-129 9-92 (98)
265 cd08693 C2_PI3K_class_I_beta_d 94.0 0.4 8.7E-06 47.6 10.1 102 273-396 9-136 (173)
266 PF10358 NT-C2: N-terminal C2 93.9 1.5 3.2E-05 42.1 13.8 114 600-729 7-135 (143)
267 PF02453 Reticulon: Reticulon; 93.9 0.012 2.6E-07 58.6 -0.9 65 927-991 90-154 (169)
268 cd08397 C2_PI3K_class_III C2 d 93.5 0.69 1.5E-05 45.1 10.5 92 292-403 29-130 (159)
269 cd08397 C2_PI3K_class_III C2 d 93.2 0.36 7.7E-06 47.1 8.0 91 23-131 28-124 (159)
270 cd04012 C2A_PI3K_class_II C2 d 92.7 0.44 9.4E-06 47.4 8.0 112 3-131 7-136 (171)
271 KOG1452 Predicted Rho GTPase-a 92.2 0.37 7.9E-06 50.2 6.7 128 597-746 48-179 (442)
272 cd04012 C2A_PI3K_class_II C2 d 92.1 0.54 1.2E-05 46.7 7.8 90 437-526 9-119 (171)
273 cd08380 C2_PI3K_like C2 domain 92.0 0.92 2E-05 44.3 9.3 88 437-526 9-107 (156)
274 cd08399 C2_PI3K_class_I_gamma 91.6 1.1 2.4E-05 44.4 9.2 74 4-78 10-88 (178)
275 smart00142 PI3K_C2 Phosphoinos 88.8 2.3 5E-05 37.9 8.1 74 5-78 12-91 (100)
276 cd08399 C2_PI3K_class_I_gamma 88.6 2.8 6.1E-05 41.6 9.2 70 437-508 11-88 (178)
277 cd08695 C2_Dock-B C2 domains f 85.5 3 6.4E-05 41.6 7.4 57 37-94 54-111 (189)
278 cd08687 C2_PKN-like C2 domain 85.5 8 0.00017 33.2 8.7 85 622-728 7-92 (98)
279 PF00792 PI3K_C2: Phosphoinosi 85.4 10 0.00023 36.2 11.2 74 307-400 23-105 (142)
280 PF11618 DUF3250: Protein of u 85.4 6.7 0.00014 35.3 9.0 94 627-729 2-105 (107)
281 PF00792 PI3K_C2: Phosphoinosi 85.0 2.4 5.3E-05 40.6 6.6 75 39-131 23-102 (142)
282 cd08694 C2_Dock-A C2 domains f 85.0 8.5 0.00018 38.6 10.3 57 37-94 54-113 (196)
283 PF14429 DOCK-C2: C2 domain in 82.1 4.3 9.3E-05 40.9 7.3 58 38-96 61-120 (184)
284 cd08695 C2_Dock-B C2 domains f 82.0 13 0.00027 37.3 10.1 39 305-343 54-94 (189)
285 PF14429 DOCK-C2: C2 domain in 81.9 5.3 0.00012 40.2 7.9 58 636-695 60-120 (184)
286 PF15625 CC2D2AN-C2: CC2D2A N- 81.2 24 0.00053 34.8 12.0 88 457-546 37-126 (168)
287 cd08694 C2_Dock-A C2 domains f 80.9 10 0.00022 38.0 9.1 40 304-343 53-94 (196)
288 smart00142 PI3K_C2 Phosphoinos 79.9 10 0.00022 33.8 8.0 70 438-508 13-91 (100)
289 KOG1329 Phospholipase D1 [Lipi 79.1 2.5 5.4E-05 51.2 4.9 103 622-729 136-240 (887)
290 PF11696 DUF3292: Protein of u 76.0 6.9 0.00015 46.2 7.2 60 925-987 103-162 (642)
291 PF06219 DUF1005: Protein of u 74.1 37 0.0008 37.8 11.6 109 623-731 35-169 (460)
292 PF11618 DUF3250: Protein of u 73.6 14 0.00031 33.3 7.1 95 296-395 2-104 (107)
293 KOG3543 Ca2+-dependent activat 73.5 18 0.0004 41.6 9.4 118 600-728 341-458 (1218)
294 PF15625 CC2D2AN-C2: CC2D2A N- 72.7 25 0.00054 34.8 9.4 68 624-697 37-107 (168)
295 PF06398 Pex24p: Integral pero 72.3 8.7 0.00019 43.4 6.9 47 919-965 11-60 (359)
296 PF08151 FerI: FerI (NUC094) d 70.4 9.5 0.00021 31.5 4.8 46 357-404 3-50 (72)
297 cd08696 C2_Dock-C C2 domains f 69.8 23 0.0005 35.2 8.3 61 635-695 54-118 (179)
298 KOG0694 Serine/threonine prote 68.5 1.4 3.1E-05 51.6 -0.4 95 24-131 27-122 (694)
299 cd08679 C2_DOCK180_related C2 62.1 49 0.0011 33.0 9.2 58 637-695 55-115 (178)
300 PF09726 Macoilin: Transmembra 61.1 22 0.00047 43.6 7.5 30 949-978 76-106 (697)
301 KOG1792 Reticulon [Intracellul 59.5 36 0.00079 35.3 7.8 59 928-986 131-189 (230)
302 PTZ00447 apical membrane antig 59.3 1.2E+02 0.0025 32.9 11.3 111 272-394 58-171 (508)
303 TIGR02302 aProt_lowcomp conser 58.1 96 0.0021 38.8 12.2 25 941-965 133-157 (851)
304 cd08697 C2_Dock-D C2 domains f 54.1 65 0.0014 32.2 8.3 61 635-695 56-123 (185)
305 cd05137 RasGAP_CLA2_BUD2 CLA2/ 53.6 15 0.00033 41.6 4.2 45 685-731 1-46 (395)
306 cd08679 C2_DOCK180_related C2 53.5 29 0.00062 34.7 5.9 53 40-94 56-113 (178)
307 PTZ00447 apical membrane antig 52.4 1.6E+02 0.0036 31.8 11.1 109 600-726 58-170 (508)
308 PF07162 B9-C2: Ciliary basal 49.5 2.6E+02 0.0057 27.5 11.9 82 6-94 4-101 (168)
309 cd08696 C2_Dock-C C2 domains f 47.0 66 0.0014 32.1 7.0 40 304-343 54-95 (179)
310 KOG1329 Phospholipase D1 [Lipi 46.7 43 0.00093 41.1 6.7 85 293-383 138-225 (887)
311 PF14909 SPATA6: Spermatogenes 45.5 1.3E+02 0.0028 28.4 8.2 86 274-362 4-101 (140)
312 PF04842 DUF639: Plant protein 45.3 35 0.00075 40.7 5.5 62 921-982 490-554 (683)
313 cd08697 C2_Dock-D C2 domains f 44.8 52 0.0011 32.9 6.0 41 37-78 57-97 (185)
314 KOG0904 Phosphatidylinositol 3 44.2 45 0.00098 40.6 6.2 71 4-77 343-421 (1076)
315 KOG2419 Phosphatidylserine dec 43.2 5.4 0.00012 46.0 -1.3 78 436-525 280-361 (975)
316 PF07162 B9-C2: Ciliary basal 38.8 3E+02 0.0065 27.1 10.4 78 603-694 5-102 (168)
317 KOG4027 Uncharacterized conser 36.8 1.9E+02 0.0041 27.7 7.8 70 24-94 25-108 (187)
318 PF14924 DUF4497: Protein of u 34.1 1E+02 0.0023 28.0 5.8 63 663-730 29-105 (112)
319 PF10409 PTEN_C2: C2 domain of 33.2 2.6E+02 0.0055 26.2 8.7 91 1-92 1-92 (134)
320 KOG2419 Phosphatidylserine dec 32.5 13 0.00028 43.1 -0.5 53 24-79 304-356 (975)
321 PF10779 XhlA: Haemolysin XhlA 32.0 2.6E+02 0.0055 23.0 7.2 35 909-943 18-52 (71)
322 PF14909 SPATA6: Spermatogenes 30.9 2.3E+02 0.005 26.8 7.4 88 5-97 3-99 (140)
323 PF02453 Reticulon: Reticulon; 29.2 18 0.00039 35.6 0.0 25 937-961 1-25 (169)
324 KOG0860 Synaptobrevin/VAMP-lik 29.2 1.7E+02 0.0036 26.7 5.9 23 928-950 74-96 (116)
325 KOG3850 Predicted membrane pro 28.3 1.5E+02 0.0033 32.6 6.5 27 941-967 390-416 (455)
326 PF06219 DUF1005: Protein of u 27.4 2.9E+02 0.0062 31.2 8.5 104 293-397 36-168 (460)
327 KOG4027 Uncharacterized conser 27.2 3.5E+02 0.0076 26.0 7.8 69 622-695 24-110 (187)
328 PHA01159 hypothetical protein 25.6 2.5E+02 0.0055 25.4 6.4 33 913-945 5-37 (114)
329 PF14851 FAM176: FAM176 family 25.4 2.9E+02 0.0063 26.7 7.2 22 814-840 6-27 (153)
330 PF00957 Synaptobrevin: Synapt 24.9 2.2E+02 0.0049 24.4 6.1 22 928-949 48-69 (89)
331 cd05137 RasGAP_CLA2_BUD2 CLA2/ 23.9 96 0.0021 35.3 4.5 18 800-817 192-209 (395)
332 PF13779 DUF4175: Domain of un 22.2 7.2E+02 0.016 31.4 11.8 47 941-988 122-181 (820)
333 COG5052 YOP1 Protein involved 21.1 4.8E+02 0.01 25.8 7.7 83 920-1003 45-150 (186)
No 1
>PF08372 PRT_C: Plant phosphoribosyltransferase C-terminal; InterPro: IPR013583 This domain is found at the C terminus of phosphoribosyltransferases and phosphoribosyltransferase-like proteins. It contains putative transmembrane regions. It often appears together with calcium-ion dependent C2 domains (IPR000008 from INTERPRO).
Probab=100.00 E-value=7.3e-40 Score=305.11 Aligned_cols=156 Identities=75% Similarity=1.349 Sum_probs=152.9
Q ss_pred HHHHHHHHHHHHhhccccCCCCCCCCCCcccccccCCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHhhHHHHHHHHHH
Q 001830 853 LPTVFLYMFMIGLWNYRYRPRYPPHMNTRISYADAVHPDELDEEFDTFPTTRSPDIVRMRYDRLRSVAGRIQTVVGDVAT 932 (1008)
Q Consensus 853 lp~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~~vq~~l~~~a~ 932 (1008)
+|.++++++++++|+|+++|+.|+|+|.++|+++..++||+|||+|+.|++++.+.++|||++||+++++|||.||++|+
T Consensus 1 lp~~~l~~~~~~~w~yr~rpr~p~~~d~~ls~~~~~~~deldEEfD~~ps~~~~~~lr~Rydrlr~va~rvQ~vlgd~At 80 (156)
T PF08372_consen 1 LPTVFLYLFLIGLWNYRFRPRHPPHMDTKLSHADSAHPDELDEEFDTFPSSRPPDSLRMRYDRLRSVAGRVQNVLGDVAT 80 (156)
T ss_pred CchHHHHHHHHHHhccccCCCCCCCCCccccccccCCcchhhhhhcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhccccCChhhHHHHHHHHHHHHHHHHHhhHHHHHHhhhhhhhcCCCCCCCCCCchhhhhhcCCCCcCCCC
Q 001830 933 QGERIQALLSWRDPRAAAIFVIFCLVAAVVLYVTPFQLLALLAGCYIMRHPRFRHKTPSAPINFFRRLPARTDSML 1008 (1008)
Q Consensus 933 ~~e~~~~l~~w~~p~~t~~~~~~~~~~~~~~~~iP~r~i~l~~g~~~~~~P~~~~~~~~~~~~~~~r~ps~~~~~~ 1008 (1008)
++||++|+++|+||.+|.+++++|+++++++|++|+|+++++||+|++|||+||.++|+.+.|||+||||++|.||
T Consensus 81 ~gERl~allsWrdP~aT~lf~~~clv~avvly~vP~r~l~l~~gly~~r~P~~R~~~P~~~~nff~RlPs~~d~~l 156 (156)
T PF08372_consen 81 QGERLQALLSWRDPRATALFVVFCLVAAVVLYFVPFRVLVLIWGLYKLRHPRFRNPLPSPPLNFFRRLPSRSDSML 156 (156)
T ss_pred HHHHHHHhhccCCccHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCccccCCCCcHHHHHHHHCCCchhhcC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999987
No 2
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=100.00 E-value=2.2e-35 Score=341.77 Aligned_cols=553 Identities=22% Similarity=0.278 Sum_probs=387.8
Q ss_pred ceEEEEEEEeeCCCCCC--CCCCCCcEEEEEECCe-eeccccCCCCCCCeeeeEEEEEecCCCCCCCceEEEEEEeCCCC
Q 001830 4 LKLGVEVVSAYELMPKD--GQGSSNAFVELHFDGQ-KFRTTTKEKDLTPVWNESFYFNISDPHNLSNLALDAYVYNHNRT 80 (1008)
Q Consensus 4 ~~L~V~v~~a~~L~~~d--~~g~~dPyv~v~~~~~-~~~T~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~~~V~d~~~~ 80 (1008)
+.|.|+|.+|++|...| .++..|||+++.+.+. ..+|+++++++||+|||+|+..+...++ .|.++|||.+.+
T Consensus 436 GVv~vkI~sa~~lk~~d~~i~~~vDpyit~~~~~r~~gkT~v~~nt~nPvwNEt~Yi~lns~~d----~L~LslyD~n~~ 511 (1227)
T COG5038 436 GVVEVKIKSAEGLKKSDSTINGTVDPYITVTFSDRVIGKTRVKKNTLNPVWNETFYILLNSFTD----PLNLSLYDFNSF 511 (1227)
T ss_pred EEEEEEEeeccCcccccccccCCCCceEEEEeccccCCccceeeccCCccccceEEEEecccCC----ceeEEEEecccc
Confidence 78999999999999988 5899999999998655 4799999999999999999999876554 899999998776
Q ss_pred CCCCCeeEEEEEeCcccCCCCCceeEEEecccCCCCcccceEEEEEEEeecCCCCCCCCCCCCCccCCCCCCcccccCCC
Q 001830 81 TNSKSFLGKVRLTGTSFVPYSDAVVLHYPLEKRSIFSRVKGELGLKVFVTDDPSIRSSNPLPAMESFGHSDLRSTKSQAP 160 (1008)
Q Consensus 81 ~~~d~~lG~~~i~l~~l~~~~~~~~~~~~L~~~~~~~~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (1008)
. +|+.+|.+.++|..|..+......-+.+... .+..|.|...+.|.+... +
T Consensus 512 ~-sd~vvG~~~l~L~~L~~~~~~~ne~~e~~~~---~k~vGrL~yDl~ffp~~e-------------------------~ 562 (1227)
T COG5038 512 K-SDKVVGSTQLDLALLHQNPVKKNELYEFLRN---TKNVGRLTYDLRFFPVIE-------------------------D 562 (1227)
T ss_pred C-CcceeeeEEechHHhhhccccccceeeeecc---CccceEEEEeeeeecccC-------------------------C
Confidence 5 8999999999999987766554433444332 256799999997766210 0
Q ss_pred CCCCCCCCCCCCchhhcccccccCCCCccccccCCCCCCCCCCCCCccccccccCCCCCcceeeeccCCCCCCCCCcccc
Q 001830 161 EQVPSSAPDPFSDDKARRRHTFHHLPNANISQQQQHSSPSAAQPSMNYGAYEMKSEPQASKIVHTYSGLSSQPTDYALKE 240 (1008)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (1008)
. ... .+ ..|+.
T Consensus 563 k------------------~~~---------------~~--------------s~e~~---------------------- 573 (1227)
T COG5038 563 K------------------KEL---------------KG--------------SVEPL---------------------- 573 (1227)
T ss_pred c------------------ccc---------------cc--------------ccCCc----------------------
Confidence 0 000 00 00000
Q ss_pred cCCCCCCCccccceeeccCcccccccCcCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeE-EEeeeecCCCCCeE
Q 001830 241 TSPFLGGGQVIGGRVVRGDLRASTYDLVEQMRYLFVRVVKARDLPSKDVTGSLDPFVEVKVGNYK-GITKYYEKKQNPEW 319 (1008)
Q Consensus 241 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~-~kT~~~~~t~nP~w 319 (1008)
+ ....|.+.+++.++++|..... ....-++.+++..+. +.|+.++.+.+|.|
T Consensus 574 --e------------------------d~n~GI~k~tl~~~~~l~~~~~-~~~~~~a~l~~~~keV~st~~~k~t~~~~w 626 (1227)
T COG5038 574 --E------------------------DSNTGILKVTLREVKALDELSS-KKDNKSAELYTNAKEVYSTGKLKFTNHPSW 626 (1227)
T ss_pred --c------------------------cCCcceeEEEeeccccccCccc-cccceeEEEEecceEEeccceeeeccCCce
Confidence 0 0113689999999999976431 122333888888765 56688999999999
Q ss_pred eeEEEEEeccCCcCeEEEEEEecCCCCCeeeEEEEEEccccCCCCCCCCCCccEEEEeecCCCCccceEEEEEEEEeccC
Q 001830 320 NEVFAFSRERIQSSVLEVAVKDKDVVKDDYVGLVRFDLNEVPTRVPPDSPLAAEWYRLEDRKGEKKKGELMLAVWYGTQA 399 (1008)
Q Consensus 320 ~e~f~f~~~~~~~~~l~i~V~d~d~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~G~i~l~~~~~~~~ 399 (1008)
|+.+.-.+.+.....+.+.++|.. ..+.||+...+|.++.... .....||++..+ +|+|.++....|..
T Consensus 627 n~~~~~~v~~~~ns~~~~~~~d~~--~g~~i~~~~~~l~~li~~t----~dt~~~f~~~~~-----kg~I~~t~~W~Pi~ 695 (1227)
T COG5038 627 NLQYNVLVTDRKNSSIKVVTFDVQ--SGKVIATEGSTLPDLIDRT----LDTFLVFPLRNP-----KGRIFITNYWKPIY 695 (1227)
T ss_pred eeecceEeccCcceeEEEEecccc--cCceeccccccchHhhhcc----ccceEEEEcCCC-----cceEEEEeccceee
Confidence 999999998887788999998875 5678888889999887652 345689998743 38888887443321
Q ss_pred CCcCCCcCCCCCCCCCCCCCCcccccccccccCCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECCE-EEEeeeccCC
Q 001830 400 DEAFPDAWHSDAVTPTDSPSNVSTHIRSKVYHSPRLWYVRVNVMEAQDLVISDKNRFPDAYVKVQIGNQ-VLKTKSVQSR 478 (1008)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~l~~~-~~kT~~v~~~ 478 (1008)
.. ....+..+....+|.++|.|..|.+|......+.+|||+++.+++. ++||-.. ..
T Consensus 696 ~~---------------------~~~~s~~~~~~pIg~irv~v~~andl~n~i~g~~~dPya~v~~n~~~k~rti~~-~~ 753 (1227)
T COG5038 696 NA---------------------GGSSSKTVYDTPIGAIRVSVRKANDLRNEIPGGKSDPYATVLVNNLVKYRTIYG-SS 753 (1227)
T ss_pred cc---------------------ccccceeeecCccceEEEEeehhhcccccccCcccccceEEEecceeEEEEecc-cC
Confidence 10 0011233455678899999999999998888899999999999874 6677655 58
Q ss_pred CCCCcccceeEEEeeCCCCCcEEEEEEeccCCCCCceeEEEEEeCccccccccCCccc----------------------
Q 001830 479 TLNPVWNEDMMFVASEPFEDHLILTVEDRVGPNKDETIGKVVIPLHSVEKRADDRIVH---------------------- 536 (1008)
Q Consensus 479 ~~nP~w~e~f~f~v~~~~~~~l~i~v~d~d~~~~d~~lG~~~i~l~~l~~~~~~~~~~---------------------- 536 (1008)
+.||.|++....++..+. +.+.+.++|.+..+.|..+|++.++++++....++....
T Consensus 754 ~~npiw~~i~Yv~v~sk~-~r~~l~~~~~~~sgddr~lg~~~i~vsn~~~k~~~s~~~~~i~g~~~t~~l~~~~~~~~~t 832 (1227)
T COG5038 754 TLNPIWNEILYVPVTSKN-QRLTLECMDYEESGDDRNLGEVNINVSNVSKKDEDSALMETIDGAEETGKLSLTGKKVKGT 832 (1227)
T ss_pred ccccceeeeEEEEecCCc-cEEeeeeecchhccccceeceeeeeeeeeeecCCCcceEEeecCcccccccccccCCccee
Confidence 999999999999997764 568999999998999999999999999987633221100
Q ss_pred ----ceeEEcccCcccc----ccCCCc-----cC------C--------------------cc-----------------
Q 001830 537 ----TRWFNLEKSVSAA----LDGDNA-----KK------D--------------------KF----------------- 560 (1008)
Q Consensus 537 ----~~w~~L~~~~~~~----~~~~~~-----~~------~--------------------~~----------------- 560 (1008)
.+.|+........ .+.... +. . .+
T Consensus 833 it~~~~f~p~~i~~s~ee~~~~~k~~~e~~~~~~~~~~l~ek~~~~~D~~~~~~e~~~v~~~~d~~~~k~k~~lne~lq~ 912 (1227)
T COG5038 833 ITYKCRFYPAVIVLSLEEVRYVDKVSSEKRKSEKRKSALDEKTISLVDKEDSVEESIEVEELTDMYSLKPKLDLNEALQY 912 (1227)
T ss_pred EEEEEEEEeecccCChHHhcchhhhhhHHHHhhhhhcccCccccchhccccchhcceeeccccchhhcchhhhhhhhhcc
Confidence 0111111000000 000000 00 0 00
Q ss_pred -Cc--------------ceEEEEeecC-CccccCCcc-------------------ccC------------CC-------
Q 001830 561 -SS--------------RLHLRVCLDG-GYHVLDEST-------------------HYS------------SD------- 586 (1008)
Q Consensus 561 -~g--------------~i~l~v~~~~-~~~~~~~~~-------------------~~~------------~d------- 586 (1008)
+| .+++.+.++. +++....+. .|+ +|
T Consensus 913 ~sgv~~i~i~~g~l~~~~~~l~~f~Dd~~~~~i~s~~~~t~~~~~~~~g~~~ireL~~s~~tfrv~K~a~~~dk~v~e~t 992 (1227)
T COG5038 913 KSGVLGIQILSGELPDPGQYLQIFFDDASHPQIVSSKAPTRGERNGESGDTFIRELEYSETTFRVTKNAKKSDKVVCEVT 992 (1227)
T ss_pred cCCceEEEEEEeecCCcceEEEEEecCCCCceeeccCCcccccccchhhhhhhhhhccceEEEEeccCCcccCceeeecc
Confidence 00 1222222333 111110000 000 00
Q ss_pred C------------------------------CccccccC----CCceeEEEEEEEeecCCCCCccCCCCCCCCeEEEEEE
Q 001830 587 L------------------------------RPTAKQLW----KPSIGVLELGILNADGLHPMKTRDGRGTADTYCVAKY 632 (1008)
Q Consensus 587 ~------------------------------~~~~~~~~----~~~~g~L~v~v~~a~~L~~~~~~~~~g~~dpyv~~~~ 632 (1008)
+ .|....+. ....|.|.+.+.+|.||++. |.+|.+||||++.+
T Consensus 993 ~~t~~lvs~~~~kp~~ln~~g~~~~~v~~~~tPv~~~l~~~emv~nsG~l~I~~~~~~nl~~~---d~ng~sDpfv~~~l 1069 (1227)
T COG5038 993 LPTLDLVSNAYEKPSSLNFPGSAKVLVQVSYTPVPVKLPPVEMVENSGYLTIMLRSGENLPSS---DENGYSDPFVKLFL 1069 (1227)
T ss_pred cchhHHHHHhhCCCcEEecCCCceEEEEEEEeecccccCcceeecccCcEEEEEeccCCCccc---ccCCCCCceEEEEe
Confidence 0 00000000 13469999999999999964 67999999999999
Q ss_pred CCE-EEEeeeecCCCCcccccEEEEEeeC-CCceEEEEEEeCCCCCCCCCCCCceeEEEEEEcccccCCCeEEeeEeeee
Q 001830 633 GHK-WVRTRTIINSLSAKYNEQYTWEVYD-PATVLTVGVFDNSHIGGSSGSKDVKIGKVRIRISTLETGRVYTHSYPLLV 710 (1008)
Q Consensus 633 ~~~-~~~T~~~~~~~nP~wne~f~~~v~~-~~~~l~i~V~d~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~ 710 (1008)
+++ .++|+++++++||.|||.|.++|.. ..+.++|.|+|||.- .+++.||.+.|+|+.+..+..+....+|..
T Consensus 1070 n~k~vyktkv~KktlNPvwNEe~~i~v~~r~~D~~~i~v~Dwd~~-----~knd~lg~~~idL~~l~~~~~~n~~i~ldg 1144 (1227)
T COG5038 1070 NEKSVYKTKVVKKTLNPVWNEEFTIEVLNRVKDVLTINVNDWDSG-----EKNDLLGTAEIDLSKLEPGGTTNSNIPLDG 1144 (1227)
T ss_pred cceecccccchhccCCCCccccceEeeeccccceEEEEEeecccC-----CCccccccccccHhhcCcCCccceeeeccC
Confidence 887 7899999999999999999999985 578999999999954 499999999999999999998888888854
Q ss_pred cCCCCCccccEEEEEEEEE
Q 001830 711 LHPSGVKKMGELHLAIRFS 729 (1008)
Q Consensus 711 ~~~~~~~~~G~i~l~~~f~ 729 (1008)
.. .+ ...|.++....|.
T Consensus 1145 k~-~~-~~~g~~~~~~~~r 1161 (1227)
T COG5038 1145 KT-FI-VLDGTLHPGFNFR 1161 (1227)
T ss_pred cc-eE-ecccEeecceecc
Confidence 33 11 2347777766664
No 3
>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=1.8e-26 Score=258.97 Aligned_cols=225 Identities=33% Similarity=0.441 Sum_probs=189.3
Q ss_pred ccCcccccccCcCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC---eEEEeeeecCCCCCeEeeEEEEEe--ccCC
Q 001830 257 RGDLRASTYDLVEQMRYLFVRVVKARDLPSKDVTGSLDPFVEVKVGN---YKGITKYYEKKQNPEWNEVFAFSR--ERIQ 331 (1008)
Q Consensus 257 ~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~---~~~kT~~~~~t~nP~w~e~f~f~~--~~~~ 331 (1008)
....+++.|++. ...|.|+|++|++|+.+|..|.+||||++++.+ .+.+|++.++|+||+|||+|.|.+ .++.
T Consensus 154 G~l~fsl~Yd~~--~~~L~V~V~qa~~Lp~~d~~g~sdpyVK~~llPdk~~k~kT~v~r~tlnP~fnEtf~f~v~~~~l~ 231 (421)
T KOG1028|consen 154 GNLQFSLQYDFE--LNLLTVRVIQAHDLPAKDRGGTSDPYVKVYLLPDKKGKFKTRVHRKTLNPVFNETFRFEVPYEELS 231 (421)
T ss_pred eeEEEEEEeccc--CCEEEEEEEEecCCCcccCCCCCCCeeEEEEcCCCCCcceeeeeecCcCCccccceEeecCHHHhc
Confidence 344678888864 469999999999999999778899999999986 357999999999999999999996 3467
Q ss_pred cCeEEEEEEecC-CCCCeeeEEEEEEccccCCCCCCCCCCccEEEEeecCCCCc--cceEEEEEEEEeccCCCcCCCcCC
Q 001830 332 SSVLEVAVKDKD-VVKDDYVGLVRFDLNEVPTRVPPDSPLAAEWYRLEDRKGEK--KKGELMLAVWYGTQADEAFPDAWH 408 (1008)
Q Consensus 332 ~~~l~i~V~d~d-~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~--~~G~i~l~~~~~~~~~~~~~~~~~ 408 (1008)
...|.+.|||+| ++++++||++.++|..+... .....|.+|....... ..|+|.++++|.+.
T Consensus 232 ~~~L~l~V~~~drfsr~~~iGev~~~l~~~~~~-----~~~~~w~~l~~~~~~~~~~~gel~~sL~Y~p~---------- 296 (421)
T KOG1028|consen 232 NRVLHLSVYDFDRFSRHDFIGEVILPLGEVDLL-----STTLFWKDLQPSSTDSEELAGELLLSLCYLPT---------- 296 (421)
T ss_pred cCEEEEEEEecCCcccccEEEEEEecCcccccc-----ccceeeeccccccCCcccccceEEEEEEeecC----------
Confidence 789999999999 78999999999999998875 2256899998753322 33899999998653
Q ss_pred CCCCCCCCCCCCcccccccccccCCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEEC--C---EEEEeeeccCCCCCCc
Q 001830 409 SDAVTPTDSPSNVSTHIRSKVYHSPRLWYVRVNVMEAQDLVISDKNRFPDAYVKVQIG--N---QVLKTKSVQSRTLNPV 483 (1008)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~l~--~---~~~kT~~v~~~~~nP~ 483 (1008)
.|.|+|.|++|++|..++.++.+||||++.+- . .+.+|.+. +++.||+
T Consensus 297 --------------------------~g~ltv~v~kar~L~~~~~~~~~d~~Vk~~l~~~~~~~~kkkT~~~-~~~~npv 349 (421)
T KOG1028|consen 297 --------------------------AGRLTVVVIKARNLKSMDVGGLSDPYVKVTLLDGDKRLSKKKTSVK-KKTLNPV 349 (421)
T ss_pred --------------------------CCeEEEEEEEecCCCcccCCCCCCccEEEEEecCCceeeeeeeecc-cCCCCCc
Confidence 24799999999999999999999999999992 2 24556644 6999999
Q ss_pred ccceeEEEeeCC--CCCcEEEEEEeccCCCCCceeEEEEEeCcc
Q 001830 484 WNEDMMFVASEP--FEDHLILTVEDRVGPNKDETIGKVVIPLHS 525 (1008)
Q Consensus 484 w~e~f~f~v~~~--~~~~l~i~v~d~d~~~~d~~lG~~~i~l~~ 525 (1008)
|||+|.|.+... ....|.|+|||+|..+.+++||.|.+....
T Consensus 350 ~nesf~F~vp~~~l~~~~l~l~V~d~d~~~~~~~iG~~~lG~~~ 393 (421)
T KOG1028|consen 350 FNETFVFDVPPEQLAEVSLELTVWDHDTLGSNDLIGRCILGSDS 393 (421)
T ss_pred ccccEEEeCCHHHhheeEEEEEEEEcccccccceeeEEEecCCC
Confidence 999999988633 344799999999999999999999998775
No 4
>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=1.2e-26 Score=260.29 Aligned_cols=231 Identities=32% Similarity=0.437 Sum_probs=182.6
Q ss_pred CceEEEEEEEeeCCCCCCCCCCCCcEEEEEEC---CeeeccccCCCCCCCeeeeEEEEEecCCCCCCCceEEEEEEeCCC
Q 001830 3 HLKLGVEVVSAYELMPKDGQGSSNAFVELHFD---GQKFRTTTKEKDLTPVWNESFYFNISDPHNLSNLALDAYVYNHNR 79 (1008)
Q Consensus 3 ~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~---~~~~~T~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~~~V~d~~~ 79 (1008)
...|.|+|++|++|+++|..|++||||++++. +.+.+|++.++|+||+|||+|.|.+.. ++++...|.+.|||.|+
T Consensus 166 ~~~L~V~V~qa~~Lp~~d~~g~sdpyVK~~llPdk~~k~kT~v~r~tlnP~fnEtf~f~v~~-~~l~~~~L~l~V~~~dr 244 (421)
T KOG1028|consen 166 LNLLTVRVIQAHDLPAKDRGGTSDPYVKVYLLPDKKGKFKTRVHRKTLNPVFNETFRFEVPY-EELSNRVLHLSVYDFDR 244 (421)
T ss_pred CCEEEEEEEEecCCCcccCCCCCCCeeEEEEcCCCCCcceeeeeecCcCCccccceEeecCH-HHhccCEEEEEEEecCC
Confidence 36799999999999999977899999999996 356999999999999999999999653 55788899999999999
Q ss_pred CCCCCCeeEEEEEeCcccCCCCCceeEEEecccCCCCcc-cceEEEEEEEeecCCCCCCCCCCCCCccCCCCCCcccccC
Q 001830 80 TTNSKSFLGKVRLTGTSFVPYSDAVVLHYPLEKRSIFSR-VKGELGLKVFVTDDPSIRSSNPLPAMESFGHSDLRSTKSQ 158 (1008)
Q Consensus 80 ~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~L~~~~~~~~-~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (1008)
|+ ++++||++.++|..+..... ...|++|......+. ..|+|.++
T Consensus 245 fs-r~~~iGev~~~l~~~~~~~~-~~~w~~l~~~~~~~~~~~gel~~s-------------------------------- 290 (421)
T KOG1028|consen 245 FS-RHDFIGEVILPLGEVDLLST-TLFWKDLQPSSTDSEELAGELLLS-------------------------------- 290 (421)
T ss_pred cc-cccEEEEEEecCcccccccc-ceeeeccccccCCcccccceEEEE--------------------------------
Confidence 87 78999999999888755443 344777765421110 11233333
Q ss_pred CCCCCCCCCCCCCCchhhcccccccCCCCccccccCCCCCCCCCCCCCccccccccCCCCCcceeeeccCCCCCCCCCcc
Q 001830 159 APEQVPSSAPDPFSDDKARRRHTFHHLPNANISQQQQHSSPSAAQPSMNYGAYEMKSEPQASKIVHTYSGLSSQPTDYAL 238 (1008)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (1008)
T Consensus 291 -------------------------------------------------------------------------------- 290 (421)
T KOG1028|consen 291 -------------------------------------------------------------------------------- 290 (421)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCCCCCCCccccceeeccCcccccccCcCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eEEEeeeecC
Q 001830 239 KETSPFLGGGQVIGGRVVRGDLRASTYDLVEQMRYLFVRVVKARDLPSKDVTGSLDPFVEVKVGN-----YKGITKYYEK 313 (1008)
Q Consensus 239 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~-----~~~kT~~~~~ 313 (1008)
++|. +..|.|+|.|++|+||..++.++.+||||++++.. .++||.++++
T Consensus 291 ------------------------L~Y~--p~~g~ltv~v~kar~L~~~~~~~~~d~~Vk~~l~~~~~~~~kkkT~~~~~ 344 (421)
T KOG1028|consen 291 ------------------------LCYL--PTAGRLTVVVIKARNLKSMDVGGLSDPYVKVTLLDGDKRLSKKKTSVKKK 344 (421)
T ss_pred ------------------------EEee--cCCCeEEEEEEEecCCCcccCCCCCCccEEEEEecCCceeeeeeeecccC
Confidence 3333 23468999999999999999999999999999853 3578999999
Q ss_pred CCCCeEeeEEEEEec--cCCcCeEEEEEEecC-CCCCeeeEEEEEEccccCCCCCCCCCCccEEEEeecCC
Q 001830 314 KQNPEWNEVFAFSRE--RIQSSVLEVAVKDKD-VVKDDYVGLVRFDLNEVPTRVPPDSPLAAEWYRLEDRK 381 (1008)
Q Consensus 314 t~nP~w~e~f~f~~~--~~~~~~l~i~V~d~d-~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~ 381 (1008)
+.||+|||+|.|.+. .+....|.|+|||+| ++++++||.|.+.... . .....+|..+....
T Consensus 345 ~~npv~nesf~F~vp~~~l~~~~l~l~V~d~d~~~~~~~iG~~~lG~~~--~-----~~~~~hW~~m~~~p 408 (421)
T KOG1028|consen 345 TLNPVFNETFVFDVPPEQLAEVSLELTVWDHDTLGSNDLIGRCILGSDS--T-----GEEVRHWQEMLNSP 408 (421)
T ss_pred CCCCcccccEEEeCCHHHhheeEEEEEEEEcccccccceeeEEEecCCC--C-----chHHHHHHHHHhCc
Confidence 999999999999874 556678999999999 7888899999988665 1 12345666555443
No 5
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=99.94 E-value=1.1e-24 Score=253.54 Aligned_cols=397 Identities=18% Similarity=0.251 Sum_probs=294.9
Q ss_pred CceeEEEEEEEEeecCCCCC--CCCCCCcEEEEEECCe-EEEeeeecCCCCCeEeeEEEEEeccCCcCeEEEEEEecC-C
Q 001830 269 EQMRYLFVRVVKARDLPSKD--VTGSLDPFVEVKVGNY-KGITKYYEKKQNPEWNEVFAFSRERIQSSVLEVAVKDKD-V 344 (1008)
Q Consensus 269 ~~~~~L~V~v~~a~~L~~~d--~~g~~dpyv~v~~~~~-~~kT~~~~~t~nP~w~e~f~f~~~~~~~~~l~i~V~d~d-~ 344 (1008)
...|+|.|+|.+|++|...+ ..+..|||+.+...+. ..||++++++.||+|||+|+..+... ++.|.++|||.+ +
T Consensus 433 ~aIGVv~vkI~sa~~lk~~d~~i~~~vDpyit~~~~~r~~gkT~v~~nt~nPvwNEt~Yi~lns~-~d~L~LslyD~n~~ 511 (1227)
T COG5038 433 TAIGVVEVKIKSAEGLKKSDSTINGTVDPYITVTFSDRVIGKTRVKKNTLNPVWNETFYILLNSF-TDPLNLSLYDFNSF 511 (1227)
T ss_pred CeeEEEEEEEeeccCcccccccccCCCCceEEEEeccccCCccceeeccCCccccceEEEEeccc-CCceeEEEEecccc
Confidence 45789999999999999877 5789999999998663 56999999999999999999999877 578999999965 7
Q ss_pred CCCeeeEEEEEEccccCCCCCCCCCCccEEEEeecCCCCccceEEEEEEEEeccCCCcCCCcCCCCCCCCCCCCCCcccc
Q 001830 345 VKDDYVGLVRFDLNEVPTRVPPDSPLAAEWYRLEDRKGEKKKGELMLAVWYGTQADEAFPDAWHSDAVTPTDSPSNVSTH 424 (1008)
Q Consensus 345 ~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~G~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 424 (1008)
.+|+.+|...++|..|..+. .....-+.+... ....|++..++.|.+............ .|.
T Consensus 512 ~sd~vvG~~~l~L~~L~~~~----~~~ne~~e~~~~--~k~vGrL~yDl~ffp~~e~k~~~~~s~---e~~--------- 573 (1227)
T COG5038 512 KSDKVVGSTQLDLALLHQNP----VKKNELYEFLRN--TKNVGRLTYDLRFFPVIEDKKELKGSV---EPL--------- 573 (1227)
T ss_pred CCcceeeeEEechHHhhhcc----ccccceeeeecc--CccceEEEEeeeeecccCCcccccccc---CCc---------
Confidence 88999999999999998752 222223444322 235699999998876543211110000 000
Q ss_pred cccccccCCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECCEEEEe-eeccCCCCCCcccceeEEEeeCCCCCcEEEE
Q 001830 425 IRSKVYHSPRLWYVRVNVMEAQDLVISDKNRFPDAYVKVQIGNQVLKT-KSVQSRTLNPVWNEDMMFVASEPFEDHLILT 503 (1008)
Q Consensus 425 ~~~~~~~~~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~kT-~~v~~~~~nP~w~e~f~f~v~~~~~~~l~i~ 503 (1008)
.....|.+.+++.++.+|..... ....-+++++++++...| +.. +.+.+|.||+++...+.+.....+.+.
T Consensus 574 ------ed~n~GI~k~tl~~~~~l~~~~~-~~~~~~a~l~~~~keV~st~~~-k~t~~~~wn~~~~~~v~~~~ns~~~~~ 645 (1227)
T COG5038 574 ------EDSNTGILKVTLREVKALDELSS-KKDNKSAELYTNAKEVYSTGKL-KFTNHPSWNLQYNVLVTDRKNSSIKVV 645 (1227)
T ss_pred ------ccCCcceeEEEeeccccccCccc-cccceeEEEEecceEEecccee-eeccCCceeeecceEeccCcceeEEEE
Confidence 11235789999999999965432 222334888887765554 655 689999999999999988888889999
Q ss_pred EEeccCCCCCceeEEEEEeCccccccccCCcccceeEEcccCccccccCCCccCCccCcceEEEEeecCCccccCCcccc
Q 001830 504 VEDRVGPNKDETIGKVVIPLHSVEKRADDRIVHTRWFNLEKSVSAALDGDNAKKDKFSSRLHLRVCLDGGYHVLDESTHY 583 (1008)
Q Consensus 504 v~d~d~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~w~~L~~~~~~~~~~~~~~~~~~~g~i~l~v~~~~~~~~~~~~~~~ 583 (1008)
++|.. ..+.||....+|.++.... .....||++..++ |+|.+..++.+.+...+.
T Consensus 646 ~~d~~---~g~~i~~~~~~l~~li~~t---~dt~~~f~~~~~k---------------g~I~~t~~W~Pi~~~~~~---- 700 (1227)
T COG5038 646 TFDVQ---SGKVIATEGSTLPDLIDRT---LDTFLVFPLRNPK---------------GRIFITNYWKPIYNAGGS---- 700 (1227)
T ss_pred ecccc---cCceeccccccchHhhhcc---ccceEEEEcCCCc---------------ceEEEEeccceeeccccc----
Confidence 99864 4678888888888887653 3466899998654 788888876655422111
Q ss_pred CCCCCccccccCCCceeEEEEEEEeecCCCCCccCCCCCCCCeEEEEEECCE-EEEeeeecCCCCcccccEEEEEeeCCC
Q 001830 584 SSDLRPTAKQLWKPSIGVLELGILNADGLHPMKTRDGRGTADTYCVAKYGHK-WVRTRTIINSLSAKYNEQYTWEVYDPA 662 (1008)
Q Consensus 584 ~~d~~~~~~~~~~~~~g~L~v~v~~a~~L~~~~~~~~~g~~dpyv~~~~~~~-~~~T~~~~~~~nP~wne~f~~~v~~~~ 662 (1008)
.+...+..++|.++|.|..|.+|.. ....+++|||+++.+++. ++||-....++||.||+....++..+.
T Consensus 701 ------~s~~~~~~pIg~irv~v~~andl~n---~i~g~~~dPya~v~~n~~~k~rti~~~~~~npiw~~i~Yv~v~sk~ 771 (1227)
T COG5038 701 ------SSKTVYDTPIGAIRVSVRKANDLRN---EIPGGKSDPYATVLVNNLVKYRTIYGSSTLNPIWNEILYVPVTSKN 771 (1227)
T ss_pred ------cceeeecCccceEEEEeehhhcccc---cccCcccccceEEEecceeEEEEecccCccccceeeeEEEEecCCc
Confidence 1122234688999999999999994 356889999999999874 578888889999999999999999999
Q ss_pred ceEEEEEEeCCCCCCCCCCCCceeEEEEEEcccccCC---CeEEeeE----eeeecCCCCCccccEEEEEEEEEec
Q 001830 663 TVLTVGVFDNSHIGGSSGSKDVKIGKVRIRISTLETG---RVYTHSY----PLLVLHPSGVKKMGELHLAIRFSYT 731 (1008)
Q Consensus 663 ~~l~i~V~d~~~~~~~~~~~d~~lG~~~i~l~~l~~~---~~~~~~~----~L~~~~~~~~~~~G~i~l~~~f~~~ 731 (1008)
+.+.++++|....+ +|..||.+.|+++++... ..+...+ +.......|.+..|++.+..+|-+.
T Consensus 772 ~r~~l~~~~~~~sg-----ddr~lg~~~i~vsn~~~k~~~s~~~~~i~g~~~t~~l~~~~~~~~~tit~~~~f~p~ 842 (1227)
T COG5038 772 QRLTLECMDYEESG-----DDRNLGEVNINVSNVSKKDEDSALMETIDGAEETGKLSLTGKKVKGTITYKCRFYPA 842 (1227)
T ss_pred cEEeeeeecchhcc-----ccceeceeeeeeeeeeecCCCcceEEeecCcccccccccccCCcceeEEEEEEEEee
Confidence 99999999999887 999999999999998551 1111111 1111111234446999998888543
No 6
>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]
Probab=99.93 E-value=4.5e-25 Score=251.30 Aligned_cols=600 Identities=19% Similarity=0.226 Sum_probs=335.1
Q ss_pred ceEEEEEEEeeCCCCCCCCCCCCcEEEEEECCeeeccccCCCCCCCeeeeEEEEE-ecCCCCC-----CCceEEEEEEeC
Q 001830 4 LKLGVEVVSAYELMPKDGQGSSNAFVELHFDGQKFRTTTKEKDLTPVWNESFYFN-ISDPHNL-----SNLALDAYVYNH 77 (1008)
Q Consensus 4 ~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~~~t~nP~Wne~f~f~-v~~~~~~-----~~~~l~~~V~d~ 77 (1008)
+.+++.|.+|++|.+.|..+.+|||+.|.+.++.+.|.++.+|+||.||++..|. +.-.... .-..+.|+|||.
T Consensus 206 ~~lR~yiyQar~L~a~dk~~~sdp~a~v~f~~qs~~T~~v~~tl~ptwdq~~~f~~~ei~ge~~~~~~~ppi~v~e~yd~ 285 (1105)
T KOG1326|consen 206 SPLRSYIYQARALGAPDKDDESDPDAAVEFCGQSKETEVVPGTLNPTWDQTIIFDEVEIYGEAHLVLKNPPIRVFEVYDL 285 (1105)
T ss_pred hhhHHHHHHHHhhcCCCcccCCCchhhhhcccccceeEeecCcCCCCccceeeccceeecCccchhhcCCCeEEEEeehh
Confidence 4567788899999999999999999999999999999999999999999999987 2111111 123689999999
Q ss_pred CCCCCCCCeeEEEEEeCcccCCCCCceeEEEecccCCCCcccceEEEEEEEeecCCCCCCCCCCCCCccCCCCCCccccc
Q 001830 78 NRTTNSKSFLGKVRLTGTSFVPYSDAVVLHYPLEKRSIFSRVKGELGLKVFVTDDPSIRSSNPLPAMESFGHSDLRSTKS 157 (1008)
Q Consensus 78 ~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~L~~~~~~~~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (1008)
++.+ .++|+|+......-... .....|+++...+ ...|++.++..+...
T Consensus 286 dr~g-~~ef~gr~~~~p~V~~~--~p~lkw~p~~rg~---~l~gd~l~a~eliq~------------------------- 334 (1105)
T KOG1326|consen 286 DRSG-INEFKGRKKQRPYVMVQ--CPALKWVPTMRGA---FLDGDVLIAAELIQI------------------------- 334 (1105)
T ss_pred hhhc-hHHhhcccccceEEEec--CCccceEEeeccc---ccccchhHHHHHHhh-------------------------
Confidence 8876 89999998876333222 1223467765432 122332222211110
Q ss_pred CCCCCCCCCCCCCCCchhhcccccccCCCCccccccCCCCCCCCCCCCCccccccccCCCCCcceeeeccCCCCCCCCCc
Q 001830 158 QAPEQVPSSAPDPFSDDKARRRHTFHHLPNANISQQQQHSSPSAAQPSMNYGAYEMKSEPQASKIVHTYSGLSSQPTDYA 237 (1008)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (1008)
+. + . +.+. ++.+..+.+.
T Consensus 335 ---------------------~~-----~-i------~~p~------------------~~~~~~~~~v----------- 352 (1105)
T KOG1326|consen 335 ---------------------GK-----P-I------PQPP------------------PQREIIFSLV----------- 352 (1105)
T ss_pred ---------------------cC-----C-C------CCCC------------------cccccceecc-----------
Confidence 00 0 0 0000 0000000000
Q ss_pred ccccCCCCCCCccccceeeccCcccccccCcCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEEEeeeecC-CCC
Q 001830 238 LKETSPFLGGGQVIGGRVVRGDLRASTYDLVEQMRYLFVRVVKARDLPSKDVTGSLDPFVEVKVGNYKGITKYYEK-KQN 316 (1008)
Q Consensus 238 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~~~~~-t~n 316 (1008)
.+-++| ..+.+.+.|-...-+|...........|-+.+.++++..++..+.+ -.|
T Consensus 353 p~~iRp------------------------~~q~~~~evl~wgLrn~k~~~m~~~~~P~~~~e~g~e~v~s~~I~~~k~n 408 (1105)
T KOG1326|consen 353 PKKIRP------------------------KTQIGKAELLMWGLRNPKKSGMASTFSPALLVEFGGERVSSFSIFNRKKN 408 (1105)
T ss_pred ccCCCc------------------------ceeeeeeehhhhhhcccccccccccCCcceeEeeCCceEeeeeehhhhhC
Confidence 000111 1122345554445556655555667789999999999888777765 778
Q ss_pred CeEeeEEEEEe-----ccCCcCeEEEEEEecC-CCCCeeeEEEEEE-ccccCCCCCCCCCC-------------------
Q 001830 317 PEWNEVFAFSR-----ERIQSSVLEVAVKDKD-VVKDDYVGLVRFD-LNEVPTRVPPDSPL------------------- 370 (1008)
Q Consensus 317 P~w~e~f~f~~-----~~~~~~~l~i~V~d~d-~~~d~~lG~~~i~-l~~l~~~~~~~~~~------------------- 370 (1008)
|.++..|.+.+ .+.....+.++|.|.+ +++-..+|.|.+. +.....+.......
T Consensus 409 pnf~s~~~~~~v~lpd~e~Y~ppl~akvvd~~~fg~~~v~g~c~i~~l~nf~c~p~~~~~~~Pq~~~d~~~~~~~~~~~~ 488 (1105)
T KOG1326|consen 409 PNFPSRVLGRLVILPDEELYMPPLNAKVVDLRQFGRMEVVGQCKILSLYNFFCDPSAVNSITPQFASDPVSIMMGSTDNE 488 (1105)
T ss_pred CCCceeEEEEEEeccchHhhCccceeEEEecccccceeehhhhcchhhhhhccCchhhcccCcCCCCCchhhhcCCchhh
Confidence 88887766642 2334568999999998 8889999999984 33332221000000
Q ss_pred ---------------------ccEEEEeecCCCCc-------cceEEEEEEEEeccC-CCcCC--CcCCCC---------
Q 001830 371 ---------------------AAEWYRLEDRKGEK-------KKGELMLAVWYGTQA-DEAFP--DAWHSD--------- 410 (1008)
Q Consensus 371 ---------------------~~~w~~L~~~~~~~-------~~G~i~l~~~~~~~~-~~~~~--~~~~~~--------- 410 (1008)
..-|-.+......+ .++...|.++..... -.+|. ++|...
T Consensus 489 ~~~~~~~~l~~~~~~~~~e~~~~~w~k~~~~~~~~~k~~~~~~K~~~~LKiyn~ele~v~ef~~l~D~~~~f~l~rG~~~ 568 (1105)
T KOG1326|consen 489 IRHCNSSTLPASPHEDEEEREVDWWGKFYPSAEENAKWEVYEHKINVTLKIYNMELEMVAEFRGLQDWAVTFKLYRGKEG 568 (1105)
T ss_pred hhhccccCCCCCccccccceehhhhhhccccccccccccccccccceEEEEehhhhhhHHHHhhhhhccceeEeeecccc
Confidence 00011111111000 112223333221100 00000 000000
Q ss_pred C----------------CCCCCC---CCCcccccccccccCCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECCEE--
Q 001830 411 A----------------VTPTDS---PSNVSTHIRSKVYHSPRLWYVRVNVMEAQDLVISDKNRFPDAYVKVQIGNQV-- 469 (1008)
Q Consensus 411 ~----------------~~~~~~---~~~~~~~~~~~~~~~~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~l~~~~-- 469 (1008)
. ..|... .+.....++.-....+..-.++|+|++|.+|.+.|.+|.+||||++.+|++.
T Consensus 569 ~e~~e~~Ivg~fKgl~rIyp~~~~~~~p~~pr~~~~~~~~~pi~~LvrVyvv~A~~L~p~D~ng~adpYv~l~lGk~~~~ 648 (1105)
T KOG1326|consen 569 LECLEQQIVGEFKGLFRIYPVPRNPSSPAPPRHFLDLPKEEPIKCLVRVYVVEAFSLQPSDGNGDADPYVKLLLGKKRTL 648 (1105)
T ss_pred CCCcccchhhhhhcceeeecCCCccCCCCChhhhhcccccCcceeeEEEEEEEeeeccccCCCCCcCceeeeeeccchhh
Confidence 0 000000 0000000000001134556799999999999999999999999999999876
Q ss_pred EEeeeccCCCCCCcccceeEEEeeCCCCCcEEEEEEeccCCCCCceeEEEEEeCcccc-ccccCCccc---------cee
Q 001830 470 LKTKSVQSRTLNPVWNEDMMFVASEPFEDHLILTVEDRVGPNKDETIGKVVIPLHSVE-KRADDRIVH---------TRW 539 (1008)
Q Consensus 470 ~kT~~v~~~~~nP~w~e~f~f~v~~~~~~~l~i~v~d~d~~~~d~~lG~~~i~l~~l~-~~~~~~~~~---------~~w 539 (1008)
-+...+ .+|+||+|++.|++....+....+.+.|||+|..+.|+.||+..++|..=. ...+.+... ..|
T Consensus 649 d~~~yi-p~tlnPVfgkmfel~~~lp~ek~l~v~vyd~D~~~~d~~iget~iDLEnR~~T~~~a~cglaq~y~v~g~n~W 727 (1105)
T KOG1326|consen 649 DRAHYI-PNTLNPVFGKMFELECLLPFEKDLIVEVYDHDLEAQDEKIGETTIDLENRWLTRHRARCGLAQTYCVSGANIW 727 (1105)
T ss_pred hhhhcC-cCCCCcHHHHHHHhhcccchhhcceeEEEEeecccccchhhceehhhhhcccCcCCcccCccceeeeeccccc
Confidence 345556 499999999999999988888899999999999999999999999986521 111111111 223
Q ss_pred EEcccCccccc-----cCCC-----cc--CCccCcc-----------eE---EEE-----e---ecC----CccccCCcc
Q 001830 540 FNLEKSVSAAL-----DGDN-----AK--KDKFSSR-----------LH---LRV-----C---LDG----GYHVLDEST 581 (1008)
Q Consensus 540 ~~L~~~~~~~~-----~~~~-----~~--~~~~~g~-----------i~---l~v-----~---~~~----~~~~~~~~~ 581 (1008)
..-..+...-. .... -+ ..++.|. +. +.. . +.. ..|+.+..
T Consensus 728 ~d~~~ps~iL~~~~Q~~~i~~P~~~~e~~~i~~~g~~~~~d~~~~k~~~~~~L~~~~~r~~~~i~~~~~lvpehvetrt- 806 (1105)
T KOG1326|consen 728 RDRMDPSQILKEHCQPGGIPRPYYSYEVSAIKWKGESDIYDEKEAKTIEVPHLGNAWERLALWILMNQGLVPEHVETRT- 806 (1105)
T ss_pred cCccCHHHHHHHhhcccCCCCCeecCCcceEEecChhhhhcccccCCCCCcccchHHHHHHHHhhhhcCcCCccccccc-
Confidence 22111110000 0000 00 0000000 00 000 0 000 00000000
Q ss_pred ccCCC---CCcccccc------------------CCCceeEEEEEEEeecCCCCCccCCCCC--CCCeEEEEEEC-C--E
Q 001830 582 HYSSD---LRPTAKQL------------------WKPSIGVLELGILNADGLHPMKTRDGRG--TADTYCVAKYG-H--K 635 (1008)
Q Consensus 582 ~~~~d---~~~~~~~~------------------~~~~~g~L~v~v~~a~~L~~~~~~~~~g--~~dpyv~~~~~-~--~ 635 (1008)
.++.+ +....-++ ..+...-|+|.|..-.+...-++ ++.| .+|-||.=.+- . .
T Consensus 807 l~~~~~p~ieqgklq~Wvd~fp~d~~~ppl~itpr~~~~~~lrviiWnt~~v~l~dd-~~~ge~~sdIyv~gw~~gdee~ 885 (1105)
T KOG1326|consen 807 LHSKAFPNIEQGKLQMWVDFFPKDLYAPPLNITPRKPKKYELRVIIWNTDKVRLNDD-EITGEKMSDIYVKGWVLGDEEE 885 (1105)
T ss_pred ccCccccchhhcccchhhhhcccccCCCCCCCCCCChhheeEEEEEeeccceeecCc-cceeeeccceEEecccccchhh
Confidence 00000 00000000 12445678888877777765443 3433 36999986553 2 4
Q ss_pred EEEeeeecCC----CCcccccEEEEEe---------e--------CC-----CceEEEEEEeCCCCCCCCCCCCceeEEE
Q 001830 636 WVRTRTIINS----LSAKYNEQYTWEV---------Y--------DP-----ATVLTVGVFDNSHIGGSSGSKDVKIGKV 689 (1008)
Q Consensus 636 ~~~T~~~~~~----~nP~wne~f~~~v---------~--------~~-----~~~l~i~V~d~~~~~~~~~~~d~~lG~~ 689 (1008)
+.+|.+.+++ .|-.|.-.|-|.- . +. -..|.|+|||.|.|+ +|++||..
T Consensus 886 kq~tdvhyrsl~ge~~fnwr~~f~~Dyl~ae~~~vi~kke~~ws~dete~k~p~rl~iqiWD~d~fs-----~Dd~Lg~l 960 (1105)
T KOG1326|consen 886 KQKTDVHYRSLTGEGNFNWRFVFPFDYLPAEQLCVIAKKEYSWSLDETEFKIPARLIIQIWDNDKFS-----KDDFLGAL 960 (1105)
T ss_pred hcccceeeeeccCCcccceeeecccccchHhhHhhhhhhhhccccccccccCchheEEEecccCccC-----hhhhhhhe
Confidence 6788888876 3555543333311 0 10 124999999999988 99999999
Q ss_pred EEEcccccCC----------------------CeEEeeEeeeecCCCCCccccEEEEEEEE
Q 001830 690 RIRISTLETG----------------------RVYTHSYPLLVLHPSGVKKMGELHLAIRF 728 (1008)
Q Consensus 690 ~i~l~~l~~~----------------------~~~~~~~~L~~~~~~~~~~~G~i~l~~~f 728 (1008)
+++|+++..+ +.+..|||+........-.+|.++..+.+
T Consensus 961 ELdL~~~~~pa~sa~~c~~~~~~~~~vslFe~k~v~GWwP~~a~~~~~~~l~Gkvem~lei 1021 (1105)
T KOG1326|consen 961 ELDLSDMPAPAKSAKKCSLYMKKDKTVSLFEQKTVKGWWPCQAEEGDAKVLAGKVEMSLEI 1021 (1105)
T ss_pred eechhhCcCCCCCHHHCCceeccCcceehhhcccccccceeeecCCCcceecceeeeehhh
Confidence 9999987433 45678999998754444447988887764
No 7
>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]
Probab=99.88 E-value=3.3e-22 Score=220.57 Aligned_cols=244 Identities=27% Similarity=0.446 Sum_probs=192.1
Q ss_pred ceEEEEEEEeeCCCCCCCCCCCCcEEEEEECCee-eccccCCCCCCCeeeeEEEEEecCCCCCCCceEEEEEEeCCCCCC
Q 001830 4 LKLGVEVVSAYELMPKDGQGSSNAFVELHFDGQK-FRTTTKEKDLTPVWNESFYFNISDPHNLSNLALDAYVYNHNRTTN 82 (1008)
Q Consensus 4 ~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~~-~~T~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~~~V~d~~~~~~ 82 (1008)
..|.|+|.+|+||++++..|.+||||.|.++.+. .||.++.+++.|-|.|.|+|.+ |..++ .|.|.|||+| + +
T Consensus 5 ~sl~vki~E~knL~~~~~~g~~D~yC~v~lD~E~v~RT~tv~ksL~PF~gEe~~~~i--P~~F~--~l~fYv~D~d-~-~ 78 (800)
T KOG2059|consen 5 QSLKVKIGEAKNLPSYGPSGMRDCYCTVNLDQEEVCRTATVEKSLCPFFGEEFYFEI--PRTFR--YLSFYVWDRD-L-K 78 (800)
T ss_pred cceeEEEeecccCCCCCCCCCcCcceEEeecchhhhhhhhhhhhcCCccccceEEec--Cccee--eEEEEEeccc-c-c
Confidence 5789999999999999999999999999999775 9999999999999999999998 44444 8999999998 5 4
Q ss_pred CCCeeEEEEEeCcccCCCCCceeEEEecccCCCCcccceEEEEEEEeecCCCCCCCCCCCCCccCCCCCCcccccCCCCC
Q 001830 83 SKSFLGKVRLTGTSFVPYSDAVVLHYPLEKRSIFSRVKGELGLKVFVTDDPSIRSSNPLPAMESFGHSDLRSTKSQAPEQ 162 (1008)
Q Consensus 83 ~d~~lG~~~i~l~~l~~~~~~~~~~~~L~~~~~~~~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (1008)
+|+.||.+.|.-.+|.... ....|+.|..-...+.|+|+|++.+.+..... .
T Consensus 79 ~D~~IGKvai~re~l~~~~-~~d~W~~L~~VD~dsEVQG~v~l~l~~~e~~~--------------------------~- 130 (800)
T KOG2059|consen 79 RDDIIGKVAIKREDLHMYP-GKDTWFSLQPVDPDSEVQGKVHLELALTEAIQ--------------------------S- 130 (800)
T ss_pred cccccceeeeeHHHHhhCC-CCccceeccccCCChhhceeEEEEEEeccccC--------------------------C-
Confidence 8999999999988887666 44569999988888899999999997644100 0
Q ss_pred CCCCCCCCCCchhhcccccccCCCCccccccCCCCCCCCCCCCCccccccccCCCCCcceeeeccCCCCCCCCCcccccC
Q 001830 163 VPSSAPDPFSDDKARRRHTFHHLPNANISQQQQHSSPSAAQPSMNYGAYEMKSEPQASKIVHTYSGLSSQPTDYALKETS 242 (1008)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (1008)
+
T Consensus 131 ---------------------------------~---------------------------------------------- 131 (800)
T KOG2059|consen 131 ---------------------------------S---------------------------------------------- 131 (800)
T ss_pred ---------------------------------C----------------------------------------------
Confidence 0
Q ss_pred CCCCCCccccceeeccCcccccccCcCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECCe----EEEeeeecCCCCCe
Q 001830 243 PFLGGGQVIGGRVVRGDLRASTYDLVEQMRYLFVRVVKARDLPSKDVTGSLDPFVEVKVGNY----KGITKYYEKKQNPE 318 (1008)
Q Consensus 243 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~----~~kT~~~~~t~nP~ 318 (1008)
.+...+++++++.+.+ ++.+|||++|...+. ..+|+++++|.+|.
T Consensus 132 ------------------------------~~~c~~L~~r~~~P~~-~~~~dp~~~v~~~g~~~~~~~~T~~~kkt~~p~ 180 (800)
T KOG2059|consen 132 ------------------------------GLVCHVLKTRQGLPII-NGQCDPFARVTLCGPSKLKEKKTKVKKKTTNPQ 180 (800)
T ss_pred ------------------------------cchhhhhhhcccCcee-CCCCCcceEEeecccchhhccccceeeeccCcc
Confidence 0111122333544443 345999999998763 35899999999999
Q ss_pred EeeEEEEEeccC---------------CcCeEEEEEEec-C-CCCCeeeEEEEEEccccCCCCCCCCCCccEEEEeecCC
Q 001830 319 WNEVFAFSRERI---------------QSSVLEVAVKDK-D-VVKDDYVGLVRFDLNEVPTRVPPDSPLAAEWYRLEDRK 381 (1008)
Q Consensus 319 w~e~f~f~~~~~---------------~~~~l~i~V~d~-d-~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~ 381 (1008)
|+|.|.|.+... ..-.|++.+|++ + ..+++|+|++.+++..+... .....||.|....
T Consensus 181 ~~Ev~~f~~~~~~~~s~ks~~~~~~e~~~l~irv~lW~~~~~~~~~~FlGevrv~v~~~~~~-----s~p~~W~~Lqp~~ 255 (800)
T KOG2059|consen 181 FDEVFYFEVTREESYSKKSLFMPEEEDDMLEIRVDLWNDLNLVINDVFLGEVRVPVDVLRQK-----SSPAAWYYLQPRP 255 (800)
T ss_pred hhhheeeeeccccccccchhcCcccCCceeeEEEeeccchhhhhhhhhceeEEeehhhhhhc-----cCccceEEEecCC
Confidence 999999987543 345788999995 4 45699999999999988743 3346899998764
Q ss_pred CCc------cceEEEEEEEEe
Q 001830 382 GEK------KKGELMLAVWYG 396 (1008)
Q Consensus 382 ~~~------~~G~i~l~~~~~ 396 (1008)
.++ ..|.+++.+.|.
T Consensus 256 ~g~~~~~~~~lGslrl~v~y~ 276 (800)
T KOG2059|consen 256 NGEKSSDGGDLGSLRLNVTYT 276 (800)
T ss_pred CcccCCCCCCccceeeeEEee
Confidence 332 568888888775
No 8
>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.88 E-value=4.8e-22 Score=188.20 Aligned_cols=127 Identities=69% Similarity=1.099 Sum_probs=112.0
Q ss_pred eEEEEEEEeeCCCCCCCCCCCCcEEEEEECCeeeccccCCCCCCCeeeeEEEEEecCCCCCCCceEEEEEEeCCCCCCCC
Q 001830 5 KLGVEVVSAYELMPKDGQGSSNAFVELHFDGQKFRTTTKEKDLTPVWNESFYFNISDPHNLSNLALDAYVYNHNRTTNSK 84 (1008)
Q Consensus 5 ~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~~~V~d~~~~~~~d 84 (1008)
+|.|+|++|++|+++|..|.+||||+|++++++++|+++++++||+|||+|.|.+..+.......|.|.|||++.+..+|
T Consensus 1 ~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~~~~rT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~~~~~~~d 80 (127)
T cd04022 1 KLVVEVVDAQDLMPKDGQGSSSAYVELDFDGQKKRTRTKPKDLNPVWNEKLVFNVSDPSRLSNLVLEVYVYNDRRSGRRR 80 (127)
T ss_pred CeEEEEEEeeCCCCCCCCCCcCcEEEEEECCEEecceeEcCCCCCccceEEEEEccCHHHccCCeEEEEEeeCCCCcCCC
Confidence 48999999999999999999999999999999999999999999999999999986544444568999999998765468
Q ss_pred CeeEEEEEeCcccCCCCCceeEEEecccCCCCcccceEEEEEEEeec
Q 001830 85 SFLGKVRLTGTSFVPYSDAVVLHYPLEKRSIFSRVKGELGLKVFVTD 131 (1008)
Q Consensus 85 ~~lG~~~i~l~~l~~~~~~~~~~~~L~~~~~~~~~~G~i~~~~~~~~ 131 (1008)
+|||++.+++.++...+.....||+|++++..++++|+|++++++.+
T Consensus 81 ~~lG~v~i~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~~ 127 (127)
T cd04022 81 SFLGRVRISGTSFVPPSEAVVQRYPLEKRGLFSRVRGEIGLKVYITD 127 (127)
T ss_pred CeeeEEEEcHHHcCCCCCccceEeEeeeCCCCCCccEEEEEEEEEcC
Confidence 99999999999998666777789999988766778999999998753
No 9
>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.87 E-value=3.3e-21 Score=186.00 Aligned_cols=150 Identities=69% Similarity=1.152 Sum_probs=127.9
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCEEEEeeeccCCCCCCcccceeEEEeeCCCCCcEEEEEEeccCCCCCcee
Q 001830 437 YVRVNVMEAQDLVISDKNRFPDAYVKVQIGNQVLKTKSVQSRTLNPVWNEDMMFVASEPFEDHLILTVEDRVGPNKDETI 516 (1008)
Q Consensus 437 ~L~v~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~kT~~v~~~~~nP~w~e~f~f~v~~~~~~~l~i~v~d~d~~~~d~~l 516 (1008)
.|+|+|++|++|+..+..|.+||||++.++++.++|+++.+++.||.|||.|.|.+.++..+.|.|.|+|++..+++++|
T Consensus 1 ~L~V~Vi~A~~L~~~d~~g~sDPYV~v~l~~~~~kTk~~~~~t~nP~WNE~F~f~v~~~~~~~l~v~V~d~~~~~~dd~l 80 (150)
T cd04019 1 YLRVTVIEAQDLVPSDKNRVPEVFVKAQLGNQVLRTRPSQTRNGNPSWNEELMFVAAEPFEDHLILSVEDRVGPNKDEPL 80 (150)
T ss_pred CEEEEEEEeECCCCCCCCCCCCeEEEEEECCEEeeeEeccCCCCCCcccCcEEEEecCccCCeEEEEEEEecCCCCCCeE
Confidence 38999999999999999999999999999999999998754479999999999999877667899999999988889999
Q ss_pred EEEEEeCccccccccCCcccceeEEcccCccccccCCCccCCccCcceEEEEeecCCccccCCccccCCCCCc
Q 001830 517 GKVVIPLHSVEKRADDRIVHTRWFNLEKSVSAALDGDNAKKDKFSSRLHLRVCLDGGYHVLDESTHYSSDLRP 589 (1008)
Q Consensus 517 G~~~i~l~~l~~~~~~~~~~~~w~~L~~~~~~~~~~~~~~~~~~~g~i~l~v~~~~~~~~~~~~~~~~~d~~~ 589 (1008)
|++.++|+++....+......+||+|....+... +++..+.+|+|++++++++.+++.+++.+|++|++|
T Consensus 81 G~v~i~L~~l~~~~~~~~~~~~W~~L~~~~~~~~---~~k~~k~~g~l~l~i~~~~~~~~~~~~~~~~~~~~~ 150 (150)
T cd04019 81 GRAVIPLNDIERRVDDRPVPSRWFSLERPGGAME---QKKKRKFASRIHLRLCLDGGYHVLDESTHYSSDLRP 150 (150)
T ss_pred EEEEEEHHHCcccCCCCccCCceEECcCCCCccc---ccccCcccccEEEEEEecCcceEeecccccccCCCC
Confidence 9999999998764333456789999998753211 112345689999999999999999999999999875
No 10
>cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.86 E-value=5.5e-21 Score=177.35 Aligned_cols=124 Identities=66% Similarity=1.101 Sum_probs=107.7
Q ss_pred EEEEEEEeecCCCCCccCCCCCCCCeEEEEEECCEEEEeeeecCCCCcccccEEEEEeeCCCceEEEEEEeCCCCC-CCC
Q 001830 601 VLELGILNADGLHPMKTRDGRGTADTYCVAKYGHKWVRTRTIINSLSAKYNEQYTWEVYDPATVLTVGVFDNSHIG-GSS 679 (1008)
Q Consensus 601 ~L~v~v~~a~~L~~~~~~~~~g~~dpyv~~~~~~~~~~T~~~~~~~nP~wne~f~~~v~~~~~~l~i~V~d~~~~~-~~~ 679 (1008)
.|.|+|++|+||+.+..+|..|.+||||++++|+++.||++++++.||+|||+|.|.+.++...|.|+|||++.++ .+.
T Consensus 1 ~L~v~v~~A~~~~~l~~~d~~g~sDPYv~i~~g~~~~rTk~~~~~~nP~WnE~f~f~v~~~~~~l~v~V~d~d~~~~~~~ 80 (126)
T cd08379 1 ILEVGILGAQGLDVLRAKDGRGSTDAYCVAKYGPKWVRTRTVEDSSNPRWNEQYTWPVYDPCTVLTVGVFDNSQSHWKEA 80 (126)
T ss_pred CeEEEEEEeECCccccccccCCCCCeeEEEEECCEEeEcCcccCCCCCcceeEEEEEecCCCCEEEEEEEECCCcccccc
Confidence 3799999999944443557889999999999999999999999999999999999999988889999999998651 001
Q ss_pred CCCCceeEEEEEEcccccCCCeEEeeEeeeecCCCCCccccEEEE
Q 001830 680 GSKDVKIGKVRIRISTLETGRVYTHSYPLLVLHPSGVKKMGELHL 724 (1008)
Q Consensus 680 ~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~G~i~l 724 (1008)
..+|++||++.|+|+.+..+.....||+|...++++.++.|+|++
T Consensus 81 ~~~dd~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~g~l~~ 125 (126)
T cd08379 81 VQPDVLIGKVRIRLSTLEDDRVYAHSYPLLSLNPSGVKKMGELEC 125 (126)
T ss_pred CCCCceEEEEEEEHHHccCCCEEeeEEEeEeCCCCCccCCcEEEe
Confidence 137999999999999999999999999999888777778899876
No 11
>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]
Probab=99.86 E-value=2.9e-21 Score=213.09 Aligned_cols=248 Identities=21% Similarity=0.351 Sum_probs=194.9
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCE-EEEeeeccCCCCCCcccceeEEEeeCCCCCcEEEEEEeccCCCCCce
Q 001830 437 YVRVNVMEAQDLVISDKNRFPDAYVKVQIGNQ-VLKTKSVQSRTLNPVWNEDMMFVASEPFEDHLILTVEDRVGPNKDET 515 (1008)
Q Consensus 437 ~L~v~v~~a~~L~~~d~~g~~dpyv~v~l~~~-~~kT~~v~~~~~nP~w~e~f~f~v~~~~~~~l~i~v~d~d~~~~d~~ 515 (1008)
.|.|+|.+|+||+..+..|..||||.|.+.++ .+||.+|. +++.|.|.|+|.|.+...+ ..|.|-|||.| +++|+.
T Consensus 6 sl~vki~E~knL~~~~~~g~~D~yC~v~lD~E~v~RT~tv~-ksL~PF~gEe~~~~iP~~F-~~l~fYv~D~d-~~~D~~ 82 (800)
T KOG2059|consen 6 SLKVKIGEAKNLPSYGPSGMRDCYCTVNLDQEEVCRTATVE-KSLCPFFGEEFYFEIPRTF-RYLSFYVWDRD-LKRDDI 82 (800)
T ss_pred ceeEEEeecccCCCCCCCCCcCcceEEeecchhhhhhhhhh-hhcCCccccceEEecCcce-eeEEEEEeccc-cccccc
Confidence 58999999999999999999999999999765 78999995 9999999999999996544 46999999999 999999
Q ss_pred eEEEEEeCccccccccCCcccceeEEcccCccccccCCCccCCccCcceEEEEeecCCccccCCccccCCCCCccccccC
Q 001830 516 IGKVVIPLHSVEKRADDRIVHTRWFNLEKSVSAALDGDNAKKDKFSSRLHLRVCLDGGYHVLDESTHYSSDLRPTAKQLW 595 (1008)
Q Consensus 516 lG~~~i~l~~l~~~~~~~~~~~~w~~L~~~~~~~~~~~~~~~~~~~g~i~l~v~~~~~~~~~~~~~~~~~d~~~~~~~~~ 595 (1008)
||.+.|.-.+|.... ..+.|+.|..-+... ...|+||+++.+.....
T Consensus 83 IGKvai~re~l~~~~----~~d~W~~L~~VD~ds---------EVQG~v~l~l~~~e~~~-------------------- 129 (800)
T KOG2059|consen 83 IGKVAIKREDLHMYP----GKDTWFSLQPVDPDS---------EVQGKVHLELALTEAIQ-------------------- 129 (800)
T ss_pred cceeeeeHHHHhhCC----CCccceeccccCCCh---------hhceeEEEEEEeccccC--------------------
Confidence 999999998887653 578999999876443 34699999998754321
Q ss_pred CCceeEEEEEEEeecCCCCCccCCCCCCCCeEEEEEECCEEE----EeeeecCCCCcccccEEEEEeeCC----------
Q 001830 596 KPSIGVLELGILNADGLHPMKTRDGRGTADTYCVAKYGHKWV----RTRTIINSLSAKYNEQYTWEVYDP---------- 661 (1008)
Q Consensus 596 ~~~~g~L~v~v~~a~~L~~~~~~~~~g~~dpyv~~~~~~~~~----~T~~~~~~~nP~wne~f~~~v~~~---------- 661 (1008)
...+...+++++++-+. .+|.+||||++...+.+. +|++.++|.+|.|+|.|.|.+...
T Consensus 130 ---~~~~~c~~L~~r~~~P~----~~~~~dp~~~v~~~g~~~~~~~~T~~~kkt~~p~~~Ev~~f~~~~~~~~s~ks~~~ 202 (800)
T KOG2059|consen 130 ---SSGLVCHVLKTRQGLPI----INGQCDPFARVTLCGPSKLKEKKTKVKKKTTNPQFDEVFYFEVTREESYSKKSLFM 202 (800)
T ss_pred ---CCcchhhhhhhcccCce----eCCCCCcceEEeecccchhhccccceeeeccCcchhhheeeeeccccccccchhcC
Confidence 01123334455555554 256699999999866544 999999999999999999988533
Q ss_pred ------CceEEEEEEeC-CCCCCCCCCCCceeEEEEEEcccccCCCeEEeeEeeeecCCCC-C---ccccEEEEEEEEEe
Q 001830 662 ------ATVLTVGVFDN-SHIGGSSGSKDVKIGKVRIRISTLETGRVYTHSYPLLVLHPSG-V---KKMGELHLAIRFSY 730 (1008)
Q Consensus 662 ------~~~l~i~V~d~-~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~-~---~~~G~i~l~~~f~~ 730 (1008)
...|.+++|++ +.+. .++|+|.+.+++..+........||-|.....+. . .--|.+.+.++++.
T Consensus 203 ~~~e~~~l~irv~lW~~~~~~~-----~~~FlGevrv~v~~~~~~s~p~~W~~Lqp~~~g~~~~~~~~lGslrl~v~y~~ 277 (800)
T KOG2059|consen 203 PEEEDDMLEIRVDLWNDLNLVI-----NDVFLGEVRVPVDVLRQKSSPAAWYYLQPRPNGEKSSDGGDLGSLRLNVTYTE 277 (800)
T ss_pred cccCCceeeEEEeeccchhhhh-----hhhhceeEEeehhhhhhccCccceEEEecCCCcccCCCCCCccceeeeEEeee
Confidence 23588999984 4333 6999999999999988666778999998654321 1 12488888888865
Q ss_pred cc
Q 001830 731 TS 732 (1008)
Q Consensus 731 ~~ 732 (1008)
+.
T Consensus 278 D~ 279 (800)
T KOG2059|consen 278 DH 279 (800)
T ss_pred ce
Confidence 43
No 12
>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip). Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian
Probab=99.85 E-value=1.3e-20 Score=173.85 Aligned_cols=118 Identities=21% Similarity=0.356 Sum_probs=103.6
Q ss_pred eEEEEEEEeecCCCCCccCCCCCCCCeEEEEEECCEEEEeeeecC-CCCcccccEEEEEeeCCCceEEEEEEeCCCCCCC
Q 001830 600 GVLELGILNADGLHPMKTRDGRGTADTYCVAKYGHKWVRTRTIIN-SLSAKYNEQYTWEVYDPATVLTVGVFDNSHIGGS 678 (1008)
Q Consensus 600 g~L~v~v~~a~~L~~~~~~~~~g~~dpyv~~~~~~~~~~T~~~~~-~~nP~wne~f~~~v~~~~~~l~i~V~d~~~~~~~ 678 (1008)
|.|.|+|++|++|+.. + .|++||||++.+|+++++|+++.+ +.||+|||.|.|.+.+....|.|+|||+|.++
T Consensus 2 g~L~v~v~~Ak~l~~~---~-~g~sDPYv~i~lg~~~~kT~v~~~~~~nP~WNe~F~f~v~~~~~~l~~~V~d~d~~~-- 75 (121)
T cd04016 2 GRLSITVVQAKLVKNY---G-LTRMDPYCRIRVGHAVYETPTAYNGAKNPRWNKTIQCTLPEGVDSIYIEIFDERAFT-- 75 (121)
T ss_pred cEEEEEEEEccCCCcC---C-CCCCCceEEEEECCEEEEeEEccCCCCCCccCeEEEEEecCCCcEEEEEEEeCCCCc--
Confidence 8999999999998743 3 689999999999999999999976 79999999999999876678999999999887
Q ss_pred CCCCCceeEEEEEEcc-cccCCCeEEeeEeeeecCCCCCccccEEEEEEEE
Q 001830 679 SGSKDVKIGKVRIRIS-TLETGRVYTHSYPLLVLHPSGVKKMGELHLAIRF 728 (1008)
Q Consensus 679 ~~~~d~~lG~~~i~l~-~l~~~~~~~~~~~L~~~~~~~~~~~G~i~l~~~f 728 (1008)
+|++||++.|+|. .+..|+..+.||+|.... +..+.|+|+|.++|
T Consensus 76 ---~dd~iG~~~i~l~~~~~~g~~~~~W~~L~~~~--~~~~~g~i~l~l~y 121 (121)
T cd04016 76 ---MDERIAWTHITIPESVFNGETLDDWYSLSGKQ--GEDKEGMINLVFSY 121 (121)
T ss_pred ---CCceEEEEEEECchhccCCCCccccEeCcCcc--CCCCceEEEEEEeC
Confidence 8999999999996 588888889999997533 34567999999874
No 13
>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip). Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian
Probab=99.84 E-value=2.3e-20 Score=172.06 Aligned_cols=119 Identities=13% Similarity=0.159 Sum_probs=99.4
Q ss_pred ceEEEEEEEeeCCCCCCCCCCCCcEEEEEECCeeeccccCCC-CCCCeeeeEEEEEecCCCCCCCceEEEEEEeCCCCCC
Q 001830 4 LKLGVEVVSAYELMPKDGQGSSNAFVELHFDGQKFRTTTKEK-DLTPVWNESFYFNISDPHNLSNLALDAYVYNHNRTTN 82 (1008)
Q Consensus 4 ~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~~~-t~nP~Wne~f~f~v~~~~~~~~~~l~~~V~d~~~~~~ 82 (1008)
+.|.|+|++|++|+..+ .|++||||+|.+++++++|+++.+ +.||+|||+|.|.+.+. ...|.|+|||+|.++
T Consensus 2 g~L~v~v~~Ak~l~~~~-~g~sDPYv~i~lg~~~~kT~v~~~~~~nP~WNe~F~f~v~~~----~~~l~~~V~d~d~~~- 75 (121)
T cd04016 2 GRLSITVVQAKLVKNYG-LTRMDPYCRIRVGHAVYETPTAYNGAKNPRWNKTIQCTLPEG----VDSIYIEIFDERAFT- 75 (121)
T ss_pred cEEEEEEEEccCCCcCC-CCCCCceEEEEECCEEEEeEEccCCCCCCccCeEEEEEecCC----CcEEEEEEEeCCCCc-
Confidence 68999999999988776 789999999999999999999876 89999999999998542 247999999999886
Q ss_pred CCCeeEEEEEeCcccCCCCCceeEEEecccCCCCcccceEEEEEEEe
Q 001830 83 SKSFLGKVRLTGTSFVPYSDAVVLHYPLEKRSIFSRVKGELGLKVFV 129 (1008)
Q Consensus 83 ~d~~lG~~~i~l~~l~~~~~~~~~~~~L~~~~~~~~~~G~i~~~~~~ 129 (1008)
+|++||++.|++......++....||+|.+... .+..|.|++++.+
T Consensus 76 ~dd~iG~~~i~l~~~~~~g~~~~~W~~L~~~~~-~~~~g~i~l~l~y 121 (121)
T cd04016 76 MDERIAWTHITIPESVFNGETLDDWYSLSGKQG-EDKEGMINLVFSY 121 (121)
T ss_pred CCceEEEEEEECchhccCCCCccccEeCcCccC-CCCceEEEEEEeC
Confidence 799999999999653334455677999987543 2467999999864
No 14
>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I. Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member
Probab=99.84 E-value=1.5e-20 Score=177.73 Aligned_cols=121 Identities=25% Similarity=0.403 Sum_probs=102.4
Q ss_pred EEEEEEEeeCCCCCCCCCCCCcEEEEEECCeeeccccCCCCCCCeeeeEEEEEecCC--CCCCCceEEEEEEeCCCCCCC
Q 001830 6 LGVEVVSAYELMPKDGQGSSNAFVELHFDGQKFRTTTKEKDLTPVWNESFYFNISDP--HNLSNLALDAYVYNHNRTTNS 83 (1008)
Q Consensus 6 L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~~~t~nP~Wne~f~f~v~~~--~~~~~~~l~~~V~d~~~~~~~ 83 (1008)
++|+|++|+||+.+|..|.+||||+|.+++++++|+++++|+||+|||+|.|.+... +......|.|.|||++.++ +
T Consensus 1 ~~V~V~~A~~L~~~d~~g~~dpYv~v~l~~~~~kT~v~~~t~nP~Wne~f~F~v~~~~~~~~~~~~l~~~v~d~~~~~-~ 79 (126)
T cd08682 1 VQVTVLQARGLLCKGKSGTNDAYVIIQLGKEKYSTSVKEKTTSPVWKEECSFELPGLLSGNGNRATLQLTVMHRNLLG-L 79 (126)
T ss_pred CEEEEEECcCCcCCCCCcCCCceEEEEECCeeeeeeeecCCCCCEeCceEEEEecCcccCCCcCCEEEEEEEEccccC-C
Confidence 579999999999999999999999999999999999999999999999999998642 1234568999999998775 7
Q ss_pred CCeeEEEEEeCcccCC-CCCceeEEEecccC-CCCcccceEEEEEE
Q 001830 84 KSFLGKVRLTGTSFVP-YSDAVVLHYPLEKR-SIFSRVKGELGLKV 127 (1008)
Q Consensus 84 d~~lG~~~i~l~~l~~-~~~~~~~~~~L~~~-~~~~~~~G~i~~~~ 127 (1008)
|++||++.|+|.++.. .+.....||+|+.+ +...+.+|+|++++
T Consensus 80 d~~iG~~~i~l~~l~~~~~~~~~~W~~L~~~~~~~~~~~Gei~l~~ 125 (126)
T cd08682 80 DKFLGQVSIPLNDLDEDKGRRRTRWFKLESKPGKDDKERGEIEVDI 125 (126)
T ss_pred CceeEEEEEEHHHhhccCCCcccEEEECcCCCCCCccccceEEEEe
Confidence 8999999999999863 34455679999854 33456789999986
No 15
>cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.82 E-value=9.4e-20 Score=169.12 Aligned_cols=116 Identities=28% Similarity=0.442 Sum_probs=97.2
Q ss_pred eEEEEEEEeeC---CCCCCCCCCCCcEEEEEECCeeeccccCCCCCCCeeeeEEEEEecCCCCCCCceEEEEEEeCCCCC
Q 001830 5 KLGVEVVSAYE---LMPKDGQGSSNAFVELHFDGQKFRTTTKEKDLTPVWNESFYFNISDPHNLSNLALDAYVYNHNRTT 81 (1008)
Q Consensus 5 ~L~V~v~~a~~---L~~~d~~g~~dPyv~v~~~~~~~~T~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~~~V~d~~~~~ 81 (1008)
.|+|+|++|+| |.++|..|++||||+|++++++.+|+++++++||+|||+|.|.+.++. ..|.|+|||++..+
T Consensus 1 ~L~v~v~~A~~~~~l~~~d~~g~sDPYv~i~~g~~~~rTk~~~~~~nP~WnE~f~f~v~~~~----~~l~v~V~d~d~~~ 76 (126)
T cd08379 1 ILEVGILGAQGLDVLRAKDGRGSTDAYCVAKYGPKWVRTRTVEDSSNPRWNEQYTWPVYDPC----TVLTVGVFDNSQSH 76 (126)
T ss_pred CeEEEEEEeECCccccccccCCCCCeeEEEEECCEEeEcCcccCCCCCcceeEEEEEecCCC----CEEEEEEEECCCcc
Confidence 38999999999 899999999999999999999999999999999999999999986533 37999999998763
Q ss_pred -----CCCCeeEEEEEeCcccCCCCCceeEEEecccCCC-CcccceEEEE
Q 001830 82 -----NSKSFLGKVRLTGTSFVPYSDAVVLHYPLEKRSI-FSRVKGELGL 125 (1008)
Q Consensus 82 -----~~d~~lG~~~i~l~~l~~~~~~~~~~~~L~~~~~-~~~~~G~i~~ 125 (1008)
.+|++||++.+++.++.... ....||+|..... ..+..|+|++
T Consensus 77 ~~~~~~~dd~lG~~~i~l~~l~~~~-~~~~~~~L~~~~~~~~~~~g~l~~ 125 (126)
T cd08379 77 WKEAVQPDVLIGKVRIRLSTLEDDR-VYAHSYPLLSLNPSGVKKMGELEC 125 (126)
T ss_pred ccccCCCCceEEEEEEEHHHccCCC-EEeeEEEeEeCCCCCccCCcEEEe
Confidence 37999999999999986543 4457999986532 2345677764
No 16
>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I. Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member
Probab=99.80 E-value=3.2e-19 Score=168.63 Aligned_cols=118 Identities=25% Similarity=0.379 Sum_probs=101.4
Q ss_pred EEEEEEeecCCCCCccCCCCCCCCeEEEEEECCEEEEeeeecCCCCcccccEEEEEeeC------CCceEEEEEEeCCCC
Q 001830 602 LELGILNADGLHPMKTRDGRGTADTYCVAKYGHKWVRTRTIINSLSAKYNEQYTWEVYD------PATVLTVGVFDNSHI 675 (1008)
Q Consensus 602 L~v~v~~a~~L~~~~~~~~~g~~dpyv~~~~~~~~~~T~~~~~~~nP~wne~f~~~v~~------~~~~l~i~V~d~~~~ 675 (1008)
++|+|++|+||+++ +..|.+||||++.+++.+++|+++++++||+|||.|.|.+.. ....|.|+|||++.+
T Consensus 1 ~~V~V~~A~~L~~~---d~~g~~dpYv~v~l~~~~~kT~v~~~t~nP~Wne~f~F~v~~~~~~~~~~~~l~~~v~d~~~~ 77 (126)
T cd08682 1 VQVTVLQARGLLCK---GKSGTNDAYVIIQLGKEKYSTSVKEKTTSPVWKEECSFELPGLLSGNGNRATLQLTVMHRNLL 77 (126)
T ss_pred CEEEEEECcCCcCC---CCCcCCCceEEEEECCeeeeeeeecCCCCCEeCceEEEEecCcccCCCcCCEEEEEEEEcccc
Confidence 47999999999965 457889999999999999999999999999999999999977 356799999999977
Q ss_pred CCCCCCCCceeEEEEEEccccc--CCCeEEeeEeeeecCCCCCccccEEEEEEE
Q 001830 676 GGSSGSKDVKIGKVRIRISTLE--TGRVYTHSYPLLVLHPSGVKKMGELHLAIR 727 (1008)
Q Consensus 676 ~~~~~~~d~~lG~~~i~l~~l~--~~~~~~~~~~L~~~~~~~~~~~G~i~l~~~ 727 (1008)
+ +|++||++.|+|+++. .+.....||+|........+..|+|+|.++
T Consensus 78 ~-----~d~~iG~~~i~l~~l~~~~~~~~~~W~~L~~~~~~~~~~~Gei~l~~~ 126 (126)
T cd08682 78 G-----LDKFLGQVSIPLNDLDEDKGRRRTRWFKLESKPGKDDKERGEIEVDIQ 126 (126)
T ss_pred C-----CCceeEEEEEEHHHhhccCCCcccEEEECcCCCCCCccccceEEEEeC
Confidence 6 8999999999999987 666778999998654433345699998763
No 17
>cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.80 E-value=2.4e-19 Score=164.86 Aligned_cols=107 Identities=25% Similarity=0.385 Sum_probs=90.8
Q ss_pred eEEEEEEEeeCCCCCCCCCCCCcEEEEEECC-------eeeccccCCCCCCCeeeeEEEEEecCCCCCCCceEEEEEEeC
Q 001830 5 KLGVEVVSAYELMPKDGQGSSNAFVELHFDG-------QKFRTTTKEKDLTPVWNESFYFNISDPHNLSNLALDAYVYNH 77 (1008)
Q Consensus 5 ~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~-------~~~~T~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~~~V~d~ 77 (1008)
+|.|+|++|++|+..+ .|.+||||+|++.+ ++++|+++.+|+||+|||+|.|.+.+.+.+....|.|.|||+
T Consensus 1 kL~V~Vi~A~~L~~~d-~g~~DPYVkV~l~g~~~~~k~~k~kTkv~~~tlnPvwNE~f~F~v~~~~~~~~~~L~~~V~D~ 79 (120)
T cd08395 1 KVTVKVVAANDLKWQT-TGMFRPFVEVNLIGPHLSDKKRKFATKSKNNNWSPKYNETFQFILGNEDDPESYELHICVKDY 79 (120)
T ss_pred CEEEEEEECcCCCccc-CCCCCCEEEEEEecCCCcccccEeeeEEecCCCCCccCcEEEEEeeCcCCCceeEEEEEEEEe
Confidence 4899999999999988 49999999999832 357899999999999999999999754455667899999999
Q ss_pred CCCCCCCCeeEEEEEeCcccCCCCCceeEEEecccCC
Q 001830 78 NRTTNSKSFLGKVRLTGTSFVPYSDAVVLHYPLEKRS 114 (1008)
Q Consensus 78 ~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~L~~~~ 114 (1008)
|.. ++|++||++.+++.++...+. ...|++|+++.
T Consensus 80 d~~-~~dd~IG~~~l~l~~~~~~~~-~~~w~~L~~~~ 114 (120)
T cd08395 80 CFA-RDDRLVGVTVLQLRDIAQAGS-CACWLPLGRRI 114 (120)
T ss_pred ccc-CCCCEEEEEEEEHHHCcCCCc-EEEEEECcCcc
Confidence 744 578999999999999986654 56799998764
No 18
>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.80 E-value=4.2e-19 Score=165.59 Aligned_cols=116 Identities=29% Similarity=0.399 Sum_probs=100.2
Q ss_pred eEEEEEEEeeCCCCCCCCCCCCcEEEEEECCeeeccccCCCCCCCeeeeEEEEEecCCCCCCCceEEEEEEeCCCCCCCC
Q 001830 5 KLGVEVVSAYELMPKDGQGSSNAFVELHFDGQKFRTTTKEKDLTPVWNESFYFNISDPHNLSNLALDAYVYNHNRTTNSK 84 (1008)
Q Consensus 5 ~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~~~V~d~~~~~~~d 84 (1008)
.|.|+|++|+||+++ .+||||++++++++.+|+++++|+||+|||+|.|.+.. .....|.|+|||++.. +|
T Consensus 1 ~L~V~Vi~a~~L~~~----~~Dpyv~v~l~~~~~kT~v~~~t~nP~Wne~F~f~~~~---~~~~~L~~~v~d~d~~--~~ 71 (121)
T cd08378 1 YLYVRVVKARGLPAN----SNDPVVEVKLGNYKGSTKAIERTSNPEWNQVFAFSKDR---LQGSTLEVSVWDKDKA--KD 71 (121)
T ss_pred CEEEEEEEecCCCcc----cCCCEEEEEECCccccccccCCCCCCccceEEEEEcCC---CcCCEEEEEEEeCCCC--cC
Confidence 389999999999987 79999999999999999999999999999999999743 2446899999999876 68
Q ss_pred CeeEEEEEeCcccCCCC----CceeEEEecccCCCCcccceEEEEEEEee
Q 001830 85 SFLGKVRLTGTSFVPYS----DAVVLHYPLEKRSIFSRVKGELGLKVFVT 130 (1008)
Q Consensus 85 ~~lG~~~i~l~~l~~~~----~~~~~~~~L~~~~~~~~~~G~i~~~~~~~ 130 (1008)
++||++.+++.++.... .....||+|+.... ++.+|+|+++++|.
T Consensus 72 ~~lG~~~i~l~~l~~~~~~~~~~~~~W~~L~~~~~-~~~~G~i~l~~~~~ 120 (121)
T cd08378 72 DFLGGVCFDLSEVPTRVPPDSPLAPQWYRLEDKKG-GRVGGELMLAVWFG 120 (121)
T ss_pred ceeeeEEEEhHhCcCCCCCCCCCCcceEEccCCCC-CccceEEEEEEEec
Confidence 99999999999986532 23457999998754 68999999999985
No 19
>KOG1030 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=99.80 E-value=1.3e-19 Score=168.77 Aligned_cols=95 Identities=31% Similarity=0.490 Sum_probs=87.0
Q ss_pred CCCceEEEEEEEeeCCCCCCCCCCCCcEEEEEECCeeeccccCCCCCCCeeeeEEEEEecCCCCCCCceEEEEEEeCCCC
Q 001830 1 MSHLKLGVEVVSAYELMPKDGQGSSNAFVELHFDGQKFRTTTKEKDLTPVWNESFYFNISDPHNLSNLALDAYVYNHNRT 80 (1008)
Q Consensus 1 m~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~~~V~d~~~~ 80 (1008)
|.-+.|+|+|.+|.||..+|..++|||||++.+++++.+|+++++++||+|||.|.|.+.++.. .|++.|||+|.+
T Consensus 3 ~~vGLL~v~v~~g~~L~~rD~~~sSDPyVVl~lg~q~lkT~~v~~n~NPeWNe~ltf~v~d~~~----~lkv~VyD~D~f 78 (168)
T KOG1030|consen 3 MLVGLLRVRVKRGKNLAIRDFLGSSDPYVVLELGNQKLKTRVVYKNLNPEWNEELTFTVKDPNT----PLKVTVYDKDTF 78 (168)
T ss_pred ccceEEEEEEEeecCeeeeccccCCCCeEEEEECCeeeeeeeecCCCCCcccceEEEEecCCCc----eEEEEEEeCCCC
Confidence 3447899999999999999998999999999999999999999999999999999999987654 899999999998
Q ss_pred CCCCCeeEEEEEeCcccCCC
Q 001830 81 TNSKSFLGKVRLTGTSFVPY 100 (1008)
Q Consensus 81 ~~~d~~lG~~~i~l~~l~~~ 100 (1008)
+ .|||||.+.|+|..+...
T Consensus 79 s-~dD~mG~A~I~l~p~~~~ 97 (168)
T KOG1030|consen 79 S-SDDFMGEATIPLKPLLEA 97 (168)
T ss_pred C-cccccceeeeccHHHHHH
Confidence 7 899999999998887543
No 20
>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.80 E-value=5.6e-19 Score=164.77 Aligned_cols=119 Identities=70% Similarity=1.164 Sum_probs=106.2
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECCeEEEeeeecCCCCCeEeeEEEEEeccCCcCeEEEEEEecCCCCCeeeEEE
Q 001830 274 LFVRVVKARDLPSKDVTGSLDPFVEVKVGNYKGITKYYEKKQNPEWNEVFAFSRERIQSSVLEVAVKDKDVVKDDYVGLV 353 (1008)
Q Consensus 274 L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~~~~~t~nP~w~e~f~f~~~~~~~~~l~i~V~d~d~~~d~~lG~~ 353 (1008)
|.|+|++|+||+.+ .+||||++.+++++.+|++++++.||+|||+|.|.+..+....|.|+|||++..++++||++
T Consensus 2 L~V~Vi~a~~L~~~----~~Dpyv~v~l~~~~~kT~v~~~t~nP~Wne~F~f~~~~~~~~~L~~~v~d~d~~~~~~lG~~ 77 (121)
T cd08378 2 LYVRVVKARGLPAN----SNDPVVEVKLGNYKGSTKAIERTSNPEWNQVFAFSKDRLQGSTLEVSVWDKDKAKDDFLGGV 77 (121)
T ss_pred EEEEEEEecCCCcc----cCCCEEEEEECCccccccccCCCCCCccceEEEEEcCCCcCCEEEEEEEeCCCCcCceeeeE
Confidence 88999999999877 68999999999999999999999999999999999887667899999999995589999999
Q ss_pred EEEccccCCCCCCCCCCccEEEEeecCCCCccceEEEEEEEEe
Q 001830 354 RFDLNEVPTRVPPDSPLAAEWYRLEDRKGEKKKGELMLAVWYG 396 (1008)
Q Consensus 354 ~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~G~i~l~~~~~ 396 (1008)
.+++.++..+...+.....+||+|....+....|+|+|++||+
T Consensus 78 ~i~l~~l~~~~~~~~~~~~~W~~L~~~~~~~~~G~i~l~~~~~ 120 (121)
T cd08378 78 CFDLSEVPTRVPPDSPLAPQWYRLEDKKGGRVGGELMLAVWFG 120 (121)
T ss_pred EEEhHhCcCCCCCCCCCCcceEEccCCCCCccceEEEEEEEec
Confidence 9999999876444455678999999887656889999999985
No 21
>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.80 E-value=6.5e-19 Score=170.04 Aligned_cols=138 Identities=22% Similarity=0.284 Sum_probs=111.7
Q ss_pred EEEEEEEeecCCCCCccCCCCCCCCeEEEEEECCEEEEeeeecC-CCCcccccEEEEEeeCCC-ceEEEEEEeCCCCCCC
Q 001830 601 VLELGILNADGLHPMKTRDGRGTADTYCVAKYGHKWVRTRTIIN-SLSAKYNEQYTWEVYDPA-TVLTVGVFDNSHIGGS 678 (1008)
Q Consensus 601 ~L~v~v~~a~~L~~~~~~~~~g~~dpyv~~~~~~~~~~T~~~~~-~~nP~wne~f~~~v~~~~-~~l~i~V~d~~~~~~~ 678 (1008)
.|+|+|++|+||+++ +..|.+||||++.++++..+|+++.+ +.||.|||.|.|.+.++. ..|.|+|+|++.++
T Consensus 1 ~L~V~Vi~A~~L~~~---d~~g~sDPYV~v~l~~~~~kTk~~~~~t~nP~WNE~F~f~v~~~~~~~l~v~V~d~~~~~-- 75 (150)
T cd04019 1 YLRVTVIEAQDLVPS---DKNRVPEVFVKAQLGNQVLRTRPSQTRNGNPSWNEELMFVAAEPFEDHLILSVEDRVGPN-- 75 (150)
T ss_pred CEEEEEEEeECCCCC---CCCCCCCeEEEEEECCEEeeeEeccCCCCCCcccCcEEEEecCccCCeEEEEEEEecCCC--
Confidence 379999999999976 45789999999999999999999977 699999999999998764 58999999998765
Q ss_pred CCCCCceeEEEEEEcccccCC----CeEEeeEeeeecCC-----CCCccccEEEEEEEEEecc-hhHHHhhhcCCCCC
Q 001830 679 SGSKDVKIGKVRIRISTLETG----RVYTHSYPLLVLHP-----SGVKKMGELHLAIRFSYTS-FANMMFLYSRPLLP 746 (1008)
Q Consensus 679 ~~~~d~~lG~~~i~l~~l~~~----~~~~~~~~L~~~~~-----~~~~~~G~i~l~~~f~~~~-~~~~~~~~~~~~~p 746 (1008)
+|++||++.|+|+++..+ .....||+|..... +..+..|+|+|.+.|.... ......+|.+++.|
T Consensus 76 ---~dd~lG~v~i~L~~l~~~~~~~~~~~~W~~L~~~~~~~~~~k~~k~~g~l~l~i~~~~~~~~~~~~~~~~~~~~~ 150 (150)
T cd04019 76 ---KDEPLGRAVIPLNDIERRVDDRPVPSRWFSLERPGGAMEQKKKRKFASRIHLRLCLDGGYHVLDESTHYSSDLRP 150 (150)
T ss_pred ---CCCeEEEEEEEHHHCcccCCCCccCCceEECcCCCCcccccccCcccccEEEEEEecCcceEeecccccccCCCC
Confidence 789999999999998643 45689999986542 2234469999999997543 33445566666543
No 22
>KOG1030 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=99.80 E-value=2.5e-19 Score=167.03 Aligned_cols=117 Identities=28% Similarity=0.469 Sum_probs=99.8
Q ss_pred ceeEEEEEEEeecCCCCCccCCCCCCCCeEEEEEECCEEEEeeeecCCCCcccccEEEEEeeCCCceEEEEEEeCCCCCC
Q 001830 598 SIGVLELGILNADGLHPMKTRDGRGTADTYCVAKYGHKWVRTRTIINSLSAKYNEQYTWEVYDPATVLTVGVFDNSHIGG 677 (1008)
Q Consensus 598 ~~g~L~v~v~~a~~L~~~~~~~~~g~~dpyv~~~~~~~~~~T~~~~~~~nP~wne~f~~~v~~~~~~l~i~V~d~~~~~~ 677 (1008)
..|.|+|.|++|.||.. +|..++|||||++++|+++.+|+++++++||+|||.|.|.|.+++..|.++|||+|.++
T Consensus 4 ~vGLL~v~v~~g~~L~~---rD~~~sSDPyVVl~lg~q~lkT~~v~~n~NPeWNe~ltf~v~d~~~~lkv~VyD~D~fs- 79 (168)
T KOG1030|consen 4 LVGLLRVRVKRGKNLAI---RDFLGSSDPYVVLELGNQKLKTRVVYKNLNPEWNEELTFTVKDPNTPLKVTVYDKDTFS- 79 (168)
T ss_pred cceEEEEEEEeecCeee---eccccCCCCeEEEEECCeeeeeeeecCCCCCcccceEEEEecCCCceEEEEEEeCCCCC-
Confidence 46999999999999995 46669999999999999999999999999999999999999999999999999999887
Q ss_pred CCCCCCceeEEEEEEcccccCCCeEEeeEeeeecCCCCCccccEEEEEE
Q 001830 678 SSGSKDVKIGKVRIRISTLETGRVYTHSYPLLVLHPSGVKKMGELHLAI 726 (1008)
Q Consensus 678 ~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~G~i~l~~ 726 (1008)
.||+||.++|+|..+..... .+| |......|... |+|.++.
T Consensus 80 ----~dD~mG~A~I~l~p~~~~~~--~~~-l~~~~~~gt~~-~~v~~s~ 120 (168)
T KOG1030|consen 80 ----SDDFMGEATIPLKPLLEAQK--MDY-LKLELLTGTAI-GKVLLSR 120 (168)
T ss_pred ----cccccceeeeccHHHHHHhh--hhc-cccccCCCcEe-eEEEecc
Confidence 99999999999999876653 455 55444444433 6555543
No 23
>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD). PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic
Probab=99.80 E-value=1.3e-18 Score=169.92 Aligned_cols=124 Identities=27% Similarity=0.341 Sum_probs=108.7
Q ss_pred eeEEEEEEEeecCCCCCccC---------------------------CCCCCCCeEEEEEECCEE-EEeeeecCCCCccc
Q 001830 599 IGVLELGILNADGLHPMKTR---------------------------DGRGTADTYCVAKYGHKW-VRTRTIINSLSAKY 650 (1008)
Q Consensus 599 ~g~L~v~v~~a~~L~~~~~~---------------------------~~~g~~dpyv~~~~~~~~-~~T~~~~~~~nP~w 650 (1008)
-|.|.|+|++|++|++||.. ...|.+||||++.+++.. .||++++++.||.|
T Consensus 6 hG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~sDPYv~V~l~~~~~~rT~v~~~~~nP~W 85 (158)
T cd04015 6 HGTLDVTIYEADNLPNMDMFSEKLRRFFSKLVGCSEPTLKRPSSHRHVGKITSDPYATVDLAGARVARTRVIENSENPVW 85 (158)
T ss_pred eeeeEEEEEEeccCCCcccccchhhHHHHHHHhhcccccccccccccCCCCCcCeEEEEEECCeEeeEEEEeCCCCCCcc
Confidence 39999999999999998721 356789999999999865 69999999999999
Q ss_pred ccEEEEEeeCCCceEEEEEEeCCCCCCCCCCCCceeEEEEEEcccccCCCeEEeeEeeeecCCCCCccccEEEEEEEE
Q 001830 651 NEQYTWEVYDPATVLTVGVFDNSHIGGSSGSKDVKIGKVRIRISTLETGRVYTHSYPLLVLHPSGVKKMGELHLAIRF 728 (1008)
Q Consensus 651 ne~f~~~v~~~~~~l~i~V~d~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~G~i~l~~~f 728 (1008)
||+|.|.+.++...|.|+|+|++.++ +++||++.|+++++..+...+.||+|.....+..+..|+|++.++|
T Consensus 86 nE~F~~~~~~~~~~l~~~V~d~d~~~------~~~IG~~~i~l~~l~~g~~~~~w~~L~~~~~~~~~~~~~l~v~~~f 157 (158)
T cd04015 86 NESFHIYCAHYASHVEFTVKDNDVVG------AQLIGRAYIPVEDLLSGEPVEGWLPILDSNGKPPKPGAKIRVSLQF 157 (158)
T ss_pred ceEEEEEccCCCCEEEEEEEeCCCcC------CcEEEEEEEEhHHccCCCCcceEEECcCCCCCCCCCCCEEEEEEEE
Confidence 99999999888888999999998754 5899999999999988888899999987655555567899999998
No 24
>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein
Probab=99.80 E-value=1.1e-18 Score=163.74 Aligned_cols=119 Identities=24% Similarity=0.436 Sum_probs=102.1
Q ss_pred eEEEEEEEeeCCCCCCCCCCCCcEEEEEECC-eeeccccCCCCCCCeeeeEEEEEecCCCCCCCceEEEEEEeCCCCCCC
Q 001830 5 KLGVEVVSAYELMPKDGQGSSNAFVELHFDG-QKFRTTTKEKDLTPVWNESFYFNISDPHNLSNLALDAYVYNHNRTTNS 83 (1008)
Q Consensus 5 ~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~-~~~~T~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~~~V~d~~~~~~~ 83 (1008)
+|.|+|++|+||+..|..|.+||||++.+++ ..++|+++++|+||+|||+|.|.+.+. ...|.|+|||++..+ +
T Consensus 1 ~L~v~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~----~~~l~~~v~D~d~~~-~ 75 (121)
T cd04042 1 QLDIHLKEGRNLAARDRGGTSDPYVKFKYGGKTVYKSKTIYKNLNPVWDEKFTLPIEDV----TQPLYIKVFDYDRGL-T 75 (121)
T ss_pred CeEEEEEEeeCCCCcCCCCCCCCeEEEEECCEEEEEeeeccCCCCCccceeEEEEecCC----CCeEEEEEEeCCCCC-C
Confidence 5899999999999999999999999999987 468999999999999999999998542 258999999998875 7
Q ss_pred CCeeEEEEEeCcccCCCCCceeEEEecccCCCCcccceEEEEEEEee
Q 001830 84 KSFLGKVRLTGTSFVPYSDAVVLHYPLEKRSIFSRVKGELGLKVFVT 130 (1008)
Q Consensus 84 d~~lG~~~i~l~~l~~~~~~~~~~~~L~~~~~~~~~~G~i~~~~~~~ 130 (1008)
|++||++.+++.++.... ....|++|.+++. .+..|+|++.+.+.
T Consensus 76 ~~~iG~~~~~l~~l~~~~-~~~~~~~L~~~~~-~~~~G~l~l~~~~~ 120 (121)
T cd04042 76 DDFMGSAFVDLSTLELNK-PTEVKLKLEDPNS-DEDLGYISLVVTLT 120 (121)
T ss_pred CcceEEEEEEHHHcCCCC-CeEEEEECCCCCC-ccCceEEEEEEEEC
Confidence 899999999999987543 3456999986643 35789999999874
No 25
>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3. RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p
Probab=99.79 E-value=8.3e-19 Score=163.60 Aligned_cols=118 Identities=27% Similarity=0.479 Sum_probs=100.5
Q ss_pred EEEEEEEeeCCCCCC-CCCCCCcEEEEEECCe-eeccccCCCCCCCeeeeEEEEEecCCCCCCCceEEEEEEeCCCCCCC
Q 001830 6 LGVEVVSAYELMPKD-GQGSSNAFVELHFDGQ-KFRTTTKEKDLTPVWNESFYFNISDPHNLSNLALDAYVYNHNRTTNS 83 (1008)
Q Consensus 6 L~V~v~~a~~L~~~d-~~g~~dPyv~v~~~~~-~~~T~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~~~V~d~~~~~~~ 83 (1008)
|.|+|++|+||++++ .+|.+||||+|.++++ .++|+++++|+||+|||+|.|.+.+. ...|.|.|||++.++ +
T Consensus 2 l~v~v~~a~~L~~~~~~~g~sDpYv~v~l~~~~~~kT~v~~kt~~P~WnE~F~f~v~~~----~~~l~~~v~d~~~~~-~ 76 (121)
T cd08401 2 LKIKIGEAKNLPPRSGPNKMRDCYCTVNLDQEEVFRTKTVEKSLCPFFGEDFYFEIPRT----FRHLSFYIYDRDVLR-R 76 (121)
T ss_pred eEEEEEEccCCCCCCCCCCCcCcEEEEEECCccEEEeeEEECCCCCccCCeEEEEcCCC----CCEEEEEEEECCCCC-C
Confidence 789999999999975 4689999999999876 58999999999999999999998642 248999999998875 7
Q ss_pred CCeeEEEEEeCcccCCCCCceeEEEecccCCCCcccceEEEEEEEe
Q 001830 84 KSFLGKVRLTGTSFVPYSDAVVLHYPLEKRSIFSRVKGELGLKVFV 129 (1008)
Q Consensus 84 d~~lG~~~i~l~~l~~~~~~~~~~~~L~~~~~~~~~~G~i~~~~~~ 129 (1008)
|++||++.++++++... .....||+|+.....++.+|+|++++.+
T Consensus 77 ~~~iG~~~i~l~~l~~~-~~~~~w~~L~~~~~~~~~~G~i~l~~~~ 121 (121)
T cd08401 77 DSVIGKVAIKKEDLHKY-YGKDTWFPLQPVDADSEVQGKVHLELRL 121 (121)
T ss_pred CceEEEEEEEHHHccCC-CCcEeeEEEEccCCCCcccEEEEEEEEC
Confidence 89999999999998764 3456799999876566679999998753
No 26
>cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3). RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.79 E-value=7e-19 Score=168.55 Aligned_cols=108 Identities=23% Similarity=0.378 Sum_probs=90.3
Q ss_pred eEEEEEEEeeCCCCCCCCCCCCcEEEEEECC-----eeeccccCCCCCCCeeeeEEEEEecC------------CCCCCC
Q 001830 5 KLGVEVVSAYELMPKDGQGSSNAFVELHFDG-----QKFRTTTKEKDLTPVWNESFYFNISD------------PHNLSN 67 (1008)
Q Consensus 5 ~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~-----~~~~T~~~~~t~nP~Wne~f~f~v~~------------~~~~~~ 67 (1008)
+|.|+|++|+||++ .+|.+||||+|++.+ ++++|+++++|+||+|||+|.|.+.. .+++..
T Consensus 1 kL~V~Vi~ArnL~~--~~g~sDPYV~V~l~~~~~k~~~~kT~v~~~t~nP~wNE~F~F~v~~~~~~~~~~~~~~~~~~~~ 78 (148)
T cd04010 1 KLSVRVIECSDLAL--KNGTCDPYASVTLIYSNKKQDTKRTKVKKKTNNPQFDEAFYFDVTIDSSPEKKQFEMPEEDAEK 78 (148)
T ss_pred CEEEEEEeCcCCCC--CCCCCCceEEEEEeCCcccCcccCCccEeCCCCCccceEEEEEEecccccccccccCCcccccE
Confidence 48999999999998 568999999999976 56899999999999999999999841 123344
Q ss_pred ceEEEEEEeCCCCCCCCCeeEEEEEeCcccCCCCCceeEEEecccCCC
Q 001830 68 LALDAYVYNHNRTTNSKSFLGKVRLTGTSFVPYSDAVVLHYPLEKRSI 115 (1008)
Q Consensus 68 ~~l~~~V~d~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~L~~~~~ 115 (1008)
..|.|.|||++.+. +|+|||++.|++..+.........||+|++++.
T Consensus 79 ~~L~i~V~d~~~~~-~ddfLG~v~i~l~~l~~~~~~~~~W~~L~~~~~ 125 (148)
T cd04010 79 LELRVDLWHASMGG-GDVFLGEVRIPLRGLDLQAGSHQAWYFLQPREE 125 (148)
T ss_pred EEEEEEEEcCCCCC-CCceeEEEEEecccccccCCcCcceeecCCccc
Confidence 68999999998764 789999999999998766334567999987743
No 27
>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3. RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p
Probab=99.79 E-value=2.5e-18 Score=160.34 Aligned_cols=119 Identities=25% Similarity=0.408 Sum_probs=102.9
Q ss_pred EEEEEEeecCCCCCccCCCCCCCCeEEEEEECCE-EEEeeeecCCCCcccccEEEEEeeCCCceEEEEEEeCCCCCCCCC
Q 001830 602 LELGILNADGLHPMKTRDGRGTADTYCVAKYGHK-WVRTRTIINSLSAKYNEQYTWEVYDPATVLTVGVFDNSHIGGSSG 680 (1008)
Q Consensus 602 L~v~v~~a~~L~~~~~~~~~g~~dpyv~~~~~~~-~~~T~~~~~~~nP~wne~f~~~v~~~~~~l~i~V~d~~~~~~~~~ 680 (1008)
|.|.|++|+||++++ +..|.+||||.+.++++ .++|+++++|+||.|||+|.|.+.+....|.|.|||++.++
T Consensus 2 l~v~v~~a~~L~~~~--~~~g~sDpYv~v~l~~~~~~kT~v~~kt~~P~WnE~F~f~v~~~~~~l~~~v~d~~~~~---- 75 (121)
T cd08401 2 LKIKIGEAKNLPPRS--GPNKMRDCYCTVNLDQEEVFRTKTVEKSLCPFFGEDFYFEIPRTFRHLSFYIYDRDVLR---- 75 (121)
T ss_pred eEEEEEEccCCCCCC--CCCCCcCcEEEEEECCccEEEeeEEECCCCCccCCeEEEEcCCCCCEEEEEEEECCCCC----
Confidence 679999999999764 23578999999999875 57999999999999999999999876678999999999876
Q ss_pred CCCceeEEEEEEcccccCCCeEEeeEeeeecCCCCCccccEEEEEEEE
Q 001830 681 SKDVKIGKVRIRISTLETGRVYTHSYPLLVLHPSGVKKMGELHLAIRF 728 (1008)
Q Consensus 681 ~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~G~i~l~~~f 728 (1008)
+|++||++.++++++..+...+.||+|......+. ..|+|+++++|
T Consensus 76 -~~~~iG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~-~~G~i~l~~~~ 121 (121)
T cd08401 76 -RDSVIGKVAIKKEDLHKYYGKDTWFPLQPVDADSE-VQGKVHLELRL 121 (121)
T ss_pred -CCceEEEEEEEHHHccCCCCcEeeEEEEccCCCCc-ccEEEEEEEEC
Confidence 89999999999999988888899999986544333 36999999875
No 28
>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein
Probab=99.78 E-value=3e-18 Score=160.85 Aligned_cols=118 Identities=25% Similarity=0.364 Sum_probs=104.7
Q ss_pred EEEEEEeecCCCCCccCCCCCCCCeEEEEEECC-EEEEeeeecCCCCcccccEEEEEeeCCCceEEEEEEeCCCCCCCCC
Q 001830 602 LELGILNADGLHPMKTRDGRGTADTYCVAKYGH-KWVRTRTIINSLSAKYNEQYTWEVYDPATVLTVGVFDNSHIGGSSG 680 (1008)
Q Consensus 602 L~v~v~~a~~L~~~~~~~~~g~~dpyv~~~~~~-~~~~T~~~~~~~nP~wne~f~~~v~~~~~~l~i~V~d~~~~~~~~~ 680 (1008)
|+|+|++|++|+.. +..|.+||||++.+++ ..++|++++++.||.|||.|.|.+.++...|.|+|||++.++
T Consensus 2 L~v~v~~a~~L~~~---d~~g~~Dpyv~v~~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~l~~~v~D~d~~~---- 74 (121)
T cd04042 2 LDIHLKEGRNLAAR---DRGGTSDPYVKFKYGGKTVYKSKTIYKNLNPVWDEKFTLPIEDVTQPLYIKVFDYDRGL---- 74 (121)
T ss_pred eEEEEEEeeCCCCc---CCCCCCCCeEEEEECCEEEEEeeeccCCCCCccceeEEEEecCCCCeEEEEEEeCCCCC----
Confidence 78999999999965 4578999999999988 578999999999999999999999887889999999999876
Q ss_pred CCCceeEEEEEEcccccCCCeEEeeEeeeecCCCCCccccEEEEEEEEE
Q 001830 681 SKDVKIGKVRIRISTLETGRVYTHSYPLLVLHPSGVKKMGELHLAIRFS 729 (1008)
Q Consensus 681 ~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~G~i~l~~~f~ 729 (1008)
+|++||++.++++++..+...+.|++|...+. .+..|+|++.++|+
T Consensus 75 -~~~~iG~~~~~l~~l~~~~~~~~~~~L~~~~~--~~~~G~l~l~~~~~ 120 (121)
T cd04042 75 -TDDFMGSAFVDLSTLELNKPTEVKLKLEDPNS--DEDLGYISLVVTLT 120 (121)
T ss_pred -CCcceEEEEEEHHHcCCCCCeEEEEECCCCCC--ccCceEEEEEEEEC
Confidence 89999999999999998888899999965432 34579999999875
No 29
>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42). Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.78 E-value=2e-18 Score=165.34 Aligned_cols=120 Identities=33% Similarity=0.475 Sum_probs=102.8
Q ss_pred eEEEEEEEeeCCCCCCCCCCCCcEEEEEECCe-------eeccccCCCCCCCeeeeEEEEEecCCCCCCCceEEEEEEeC
Q 001830 5 KLGVEVVSAYELMPKDGQGSSNAFVELHFDGQ-------KFRTTTKEKDLTPVWNESFYFNISDPHNLSNLALDAYVYNH 77 (1008)
Q Consensus 5 ~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~-------~~~T~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~~~V~d~ 77 (1008)
.|.|+|++|+||+.+|..|.+||||+|++++. +++|+++++|+||+|||+|.|.+... ...|.|+|||+
T Consensus 1 ~L~v~Vi~a~~L~~~d~~~~~Dpyv~v~~~~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~----~~~l~~~v~d~ 76 (133)
T cd04033 1 ILRVKVLAGIDLAKKDIFGASDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEFFFRVNPR----EHRLLFEVFDE 76 (133)
T ss_pred CEEEEEEEeECCCcccCCCCcCcEEEEEEECCCCCCcccceeeeEEcCCCCCcEeeEEEEEEcCC----CCEEEEEEEEC
Confidence 48999999999999999999999999999764 47899999999999999999998532 24799999999
Q ss_pred CCCCCCCCeeEEEEEeCcccCCCCC-----ceeEEEecccCCCCcccceEEEEEEEe
Q 001830 78 NRTTNSKSFLGKVRLTGTSFVPYSD-----AVVLHYPLEKRSIFSRVKGELGLKVFV 129 (1008)
Q Consensus 78 ~~~~~~d~~lG~~~i~l~~l~~~~~-----~~~~~~~L~~~~~~~~~~G~i~~~~~~ 129 (1008)
+.++ +|++||++.+++.++..... ....||+|+++...++..|+|++++.+
T Consensus 77 ~~~~-~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~G~l~~~~~~ 132 (133)
T cd04033 77 NRLT-RDDFLGQVEVPLNNLPTETPGNERRYTFKDYLLRPRSSKSRVKGHLRLYMAY 132 (133)
T ss_pred CCCC-CCCeeEEEEEEHHHCCCcCccccccccchheeeeecCCCCcceeEEEEEEee
Confidence 8775 78999999999999865432 345799999876667789999999976
No 30
>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut
Probab=99.78 E-value=1.4e-18 Score=162.35 Aligned_cols=105 Identities=23% Similarity=0.267 Sum_probs=90.1
Q ss_pred CceEEEEEEEeeCCCCCCCCCCCCcEEEEEEC-----CeeeccccCCCCCCCeeeeEEEEEecCCCCCCCceEEEEEEeC
Q 001830 3 HLKLGVEVVSAYELMPKDGQGSSNAFVELHFD-----GQKFRTTTKEKDLTPVWNESFYFNISDPHNLSNLALDAYVYNH 77 (1008)
Q Consensus 3 ~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~-----~~~~~T~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~~~V~d~ 77 (1008)
.+.|.|+|++|+||+++| .|.+||||+|++. ..+++|+++++++||+|||+|.|.+...+++....|.|+|||+
T Consensus 12 ~~~L~V~Vi~A~~L~~~~-~~~~DpyVkv~l~~~~~~~~~~kT~v~~~~~nP~wnE~F~f~~~~~~~l~~~~L~~~V~d~ 90 (122)
T cd08381 12 NGTLFVMVMHAKNLPLLD-GSDPDPYVKTYLLPDPQKTTKRKTKVVRKTRNPTFNEMLVYDGLPVEDLQQRVLQVSVWSH 90 (122)
T ss_pred CCEEEEEEEEeeCCCCCC-CCCCCCEEEEEEeeCCccCCceeCCccCCCCCCCcccEEEEecCChHHhCCCEEEEEEEeC
Confidence 367999999999999999 8999999999996 3468999999999999999999997433455667999999999
Q ss_pred CCCCCCCCeeEEEEEeCcccCCCCCceeEEEec
Q 001830 78 NRTTNSKSFLGKVRLTGTSFVPYSDAVVLHYPL 110 (1008)
Q Consensus 78 ~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~L 110 (1008)
|.++ ++++||++.|+|.++.... ....||+|
T Consensus 91 d~~~-~~~~lG~~~i~l~~l~~~~-~~~~W~~L 121 (122)
T cd08381 91 DSLV-ENEFLGGVCIPLKKLDLSQ-ETEKWYPL 121 (122)
T ss_pred CCCc-CCcEEEEEEEeccccccCC-CccceEEC
Confidence 8875 7899999999999987543 34569987
No 31
>cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev
Probab=99.78 E-value=2.9e-18 Score=161.98 Aligned_cols=117 Identities=31% Similarity=0.522 Sum_probs=101.1
Q ss_pred ceEEEEEEEeeCCCCCCCCCCCCcEEEEEECCeeeccccCCCCCCCeeeeEEEEEecCCCCCCCceEEEEEEeCCCC---
Q 001830 4 LKLGVEVVSAYELMPKDGQGSSNAFVELHFDGQKFRTTTKEKDLTPVWNESFYFNISDPHNLSNLALDAYVYNHNRT--- 80 (1008)
Q Consensus 4 ~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~~~V~d~~~~--- 80 (1008)
..|.|+|++|++|+.+|..|.+||||+|+++++.++|+++++|+||+|||+|.|.+..+. ..|.|+|||+|..
T Consensus 1 ~~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~~v~~t~~P~Wne~f~f~~~~~~----~~l~i~v~d~d~~~~~ 76 (127)
T cd04027 1 AKISITVVCAQGLIAKDKTGTSDPYVTVQVGKTKKRTKTIPQNLNPVWNEKFHFECHNSS----DRIKVRVWDEDDDIKS 76 (127)
T ss_pred CeEEEEEEECcCCcCCCCCCCcCcEEEEEECCEeeecceecCCCCCccceEEEEEecCCC----CEEEEEEEECCCCccc
Confidence 368999999999999999999999999999988899999999999999999999985432 4799999999753
Q ss_pred -------CCCCCeeEEEEEeCcccCCCCCceeEEEecccCCCCcccceEEEEEE
Q 001830 81 -------TNSKSFLGKVRLTGTSFVPYSDAVVLHYPLEKRSIFSRVKGELGLKV 127 (1008)
Q Consensus 81 -------~~~d~~lG~~~i~l~~l~~~~~~~~~~~~L~~~~~~~~~~G~i~~~~ 127 (1008)
...|++||++.+++.++. .....||+|++++.++.++|+|.+++
T Consensus 77 ~~~~~~~~~~~~~iG~~~i~l~~~~---~~~~~w~~L~~~~~~~~~~G~i~~~~ 127 (127)
T cd04027 77 RLKQKFTRESDDFLGQTIIEVRTLS---GEMDVWYNLEKRTDKSAVSGAIRLHI 127 (127)
T ss_pred ccceeccccCCCcceEEEEEhHHcc---CCCCeEEECccCCCCCcEeEEEEEEC
Confidence 136899999999998864 33457999998888888999999874
No 32
>cd04046 C2_Calpain C2 domain present in Calpain proteins. A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic
Probab=99.78 E-value=4.9e-18 Score=160.17 Aligned_cols=121 Identities=26% Similarity=0.429 Sum_probs=102.7
Q ss_pred CceEEEEEEEeeCCCCCCCCCCCCcEEEEEECCeeeccccCCCCCCCeeeeEEEEEecCCCCCCCceEEEEEEeCCCCCC
Q 001830 3 HLKLGVEVVSAYELMPKDGQGSSNAFVELHFDGQKFRTTTKEKDLTPVWNESFYFNISDPHNLSNLALDAYVYNHNRTTN 82 (1008)
Q Consensus 3 ~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~~~V~d~~~~~~ 82 (1008)
...|+|+|++|++|.+.|..|.+||||++.+++++++|++++++.||+|||.|.|.+.+. ...|.|+|||++..
T Consensus 2 ~~~~~V~v~~A~~L~~~d~~g~~dPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~----~~~l~i~V~d~~~~-- 75 (126)
T cd04046 2 QVVTQVHVHSAEGLSKQDSGGGADPYVIIKCEGESVRSPVQKDTLSPEFDTQAIFYRKKP----RSPIKIQVWNSNLL-- 75 (126)
T ss_pred cEEEEEEEEeCcCCCCCCCCCCcCccEEEEECCEEEEeCccCCCCCCcccceEEEEecCC----CCEEEEEEEECCCC--
Confidence 357999999999999999999999999999999999999999999999999999987543 35899999999775
Q ss_pred CCCeeEEEEEeCcccCCCCCceeEEEecccC--CCCcccceEEEEEEEeecC
Q 001830 83 SKSFLGKVRLTGTSFVPYSDAVVLHYPLEKR--SIFSRVKGELGLKVFVTDD 132 (1008)
Q Consensus 83 ~d~~lG~~~i~l~~l~~~~~~~~~~~~L~~~--~~~~~~~G~i~~~~~~~~~ 132 (1008)
+|+|||++.+++..+. .....+|+|+++ ...+++.|+|.+++...++
T Consensus 76 ~d~~lG~~~~~l~~~~---~~~~~~~~l~~~~~~~~~~~~G~i~~~~~~~~~ 124 (126)
T cd04046 76 CDEFLGQATLSADPND---SQTLRTLPLRKRGRDAAGEVPGTISVKVTSSDD 124 (126)
T ss_pred CCCceEEEEEecccCC---CcCceEEEcccCCCCCCCCCCCEEEEEEEEccc
Confidence 5899999999987753 333457888644 3556789999999987663
No 33
>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4. Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins.
Probab=99.77 E-value=3.3e-18 Score=160.12 Aligned_cols=118 Identities=25% Similarity=0.357 Sum_probs=100.9
Q ss_pred EEEEEEEeeCCCCCCCCCCCCcEEEEEECCee-eccccCCCCCCCeeeeEEEEEecCCCCCCCceEEEEEEeCCCCCCCC
Q 001830 6 LGVEVVSAYELMPKDGQGSSNAFVELHFDGQK-FRTTTKEKDLTPVWNESFYFNISDPHNLSNLALDAYVYNHNRTTNSK 84 (1008)
Q Consensus 6 L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~~-~~T~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~~~V~d~~~~~~~d 84 (1008)
|.|+|++|+||+++|..|.+||||++.++++. ++|+++++|+||+|||.|.|.+... ...|.|+|||++..+ +|
T Consensus 2 l~v~vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~~----~~~l~v~v~d~~~~~-~d 76 (121)
T cd04054 2 LYIRIVEGKNLPAKDITGSSDPYCIVKVDNEVIIRTATVWKTLNPFWGEEYTVHLPPG----FHTVSFYVLDEDTLS-RD 76 (121)
T ss_pred EEEEEEEeeCCcCCCCCCCCCceEEEEECCEeeeeeeeEcCCCCCcccceEEEeeCCC----CCEEEEEEEECCCCC-CC
Confidence 88999999999999999999999999998764 7999999999999999999998542 248999999998775 78
Q ss_pred CeeEEEEEeCcccCCCCCceeEEEecccCCCCcccceEEEEEEE
Q 001830 85 SFLGKVRLTGTSFVPYSDAVVLHYPLEKRSIFSRVKGELGLKVF 128 (1008)
Q Consensus 85 ~~lG~~~i~l~~l~~~~~~~~~~~~L~~~~~~~~~~G~i~~~~~ 128 (1008)
++||++.+++..+...+.....|++|++........|+|++.+.
T Consensus 77 ~~iG~~~~~~~~~~~~~~~~~~W~~L~~~~~~~~~~G~i~l~~~ 120 (121)
T cd04054 77 DVIGKVSLTREVISAHPRGIDGWMNLTEVDPDEEVQGEIHLELS 120 (121)
T ss_pred CEEEEEEEcHHHhccCCCCCCcEEECeeeCCCCccccEEEEEEE
Confidence 99999999988876544445679999876545567899998874
No 34
>cd08677 C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain
Probab=99.77 E-value=1.8e-18 Score=156.26 Aligned_cols=108 Identities=19% Similarity=0.301 Sum_probs=90.2
Q ss_pred cccccccCcCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC----eEEEeeeecCCCCCeEeeEEEEEec--cCCcC
Q 001830 260 LRASTYDLVEQMRYLFVRVVKARDLPSKDVTGSLDPFVEVKVGN----YKGITKYYEKKQNPEWNEVFAFSRE--RIQSS 333 (1008)
Q Consensus 260 ~~~~~~~~~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~----~~~kT~~~~~t~nP~w~e~f~f~~~--~~~~~ 333 (1008)
.++++|+. ..+.|+|+|++|+||+ . .|.+||||++++.. .+++|+++++|+||+|||+|.|.+. ++...
T Consensus 4 ~fsL~Y~~--~~~~L~V~vikA~~L~-~--~g~sDPYVKv~L~~~~k~~k~kT~v~rktlnPvfnE~f~F~v~~~~l~~~ 78 (118)
T cd08677 4 HYSLSYDK--QKAELHVNILEAENIS-V--DAGCECYISGCVSVSEGQKEAQTALKKLALHTQWEEELVFPLPEEESLDG 78 (118)
T ss_pred EEEEEEcC--cCCEEEEEEEEecCCC-C--CCCCCeEEEEEEcCCcCccEEEcceecCCCCCccccEEEEeCCHHHhCCc
Confidence 46777875 4679999999999998 3 46699999999974 4679999999999999999999974 46678
Q ss_pred eEEEEEEecC-CCCCeeeEEEEEEccccCCCCCCCCCCccEEEEe
Q 001830 334 VLEVAVKDKD-VVKDDYVGLVRFDLNEVPTRVPPDSPLAAEWYRL 377 (1008)
Q Consensus 334 ~l~i~V~d~d-~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L 377 (1008)
.|.|.|||+| ++++++||++.+++.++... ....+|..|
T Consensus 79 tL~~~V~d~Drfs~~d~IG~v~l~l~~~~~~-----~~~~~W~~~ 118 (118)
T cd08677 79 TLTLTLRCCDRFSRHSTLGELRLKLADVSMM-----LGAAQWVDL 118 (118)
T ss_pred EEEEEEEeCCCCCCCceEEEEEEccccccCC-----ccccchhcC
Confidence 8999999999 78999999999999987553 234567543
No 35
>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins. Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr
Probab=99.77 E-value=3.3e-18 Score=160.01 Aligned_cols=117 Identities=21% Similarity=0.307 Sum_probs=99.1
Q ss_pred ceEEEEEEEeeCCCCCCCCCCCCcEEEEEECCeeeccccCC-CCCCCeeeeEEEEEecCCCCCCCceEEEEEEeCCCCCC
Q 001830 4 LKLGVEVVSAYELMPKDGQGSSNAFVELHFDGQKFRTTTKE-KDLTPVWNESFYFNISDPHNLSNLALDAYVYNHNRTTN 82 (1008)
Q Consensus 4 ~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~~-~t~nP~Wne~f~f~v~~~~~~~~~~l~~~V~d~~~~~~ 82 (1008)
+.|.|+|++|++|+..|..|.+||||+|++++++++|+++. +++||+|||+|.|.+... ....|.|+|||++..
T Consensus 1 g~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~kT~~~~~~~~nP~Wne~f~f~v~~~---~~~~l~i~v~d~~~~-- 75 (118)
T cd08681 1 GTLVVVVLKARNLPNKRKLDKQDPYCVLRIGGVTKKTKTDFRGGQHPEWDEELRFEITED---KKPILKVAVFDDDKR-- 75 (118)
T ss_pred CEEEEEEEEccCCCCCCcCCCCCceEEEEECCCccccccccCCCCCCccCceEEEEecCC---CCCEEEEEEEeCCCC--
Confidence 47999999999999999999999999999999999999875 479999999999998642 235899999999765
Q ss_pred CCCeeEEEEEeCcccCCCCCceeEEEecccCCCCcccceEEEEEEEe
Q 001830 83 SKSFLGKVRLTGTSFVPYSDAVVLHYPLEKRSIFSRVKGELGLKVFV 129 (1008)
Q Consensus 83 ~d~~lG~~~i~l~~l~~~~~~~~~~~~L~~~~~~~~~~G~i~~~~~~ 129 (1008)
+|++||++.+++.++.... ....||+|...+ +..|+|++++.|
T Consensus 76 ~~~~iG~~~~~l~~~~~~~-~~~~w~~L~~~~---~~~G~i~l~l~f 118 (118)
T cd08681 76 KPDLIGDTEVDLSPALKEG-EFDDWYELTLKG---RYAGEVYLELTF 118 (118)
T ss_pred CCcceEEEEEecHHHhhcC-CCCCcEEeccCC---cEeeEEEEEEEC
Confidence 3899999999999975533 345699998653 578999999864
No 36
>cd08677 C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain
Probab=99.77 E-value=1.5e-18 Score=156.68 Aligned_cols=91 Identities=18% Similarity=0.273 Sum_probs=80.7
Q ss_pred CceEEEEEEEeeCCCCCCCCCCCCcEEEEEECC----eeeccccCCCCCCCeeeeEEEEEecCCCCCCCceEEEEEEeCC
Q 001830 3 HLKLGVEVVSAYELMPKDGQGSSNAFVELHFDG----QKFRTTTKEKDLTPVWNESFYFNISDPHNLSNLALDAYVYNHN 78 (1008)
Q Consensus 3 ~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~----~~~~T~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~~~V~d~~ 78 (1008)
.+.|.|+|++|+||+ . .|.+||||+|++.. .+++|+++++|+||+|||+|.|.+.. ++++...|.|.|||+|
T Consensus 13 ~~~L~V~vikA~~L~-~--~g~sDPYVKv~L~~~~k~~k~kT~v~rktlnPvfnE~f~F~v~~-~~l~~~tL~~~V~d~D 88 (118)
T cd08677 13 KAELHVNILEAENIS-V--DAGCECYISGCVSVSEGQKEAQTALKKLALHTQWEEELVFPLPE-EESLDGTLTLTLRCCD 88 (118)
T ss_pred CCEEEEEEEEecCCC-C--CCCCCeEEEEEEcCCcCccEEEcceecCCCCCccccEEEEeCCH-HHhCCcEEEEEEEeCC
Confidence 478999999999999 3 46799999999962 46899999999999999999999864 6688889999999999
Q ss_pred CCCCCCCeeEEEEEeCcccC
Q 001830 79 RTTNSKSFLGKVRLTGTSFV 98 (1008)
Q Consensus 79 ~~~~~d~~lG~~~i~l~~l~ 98 (1008)
+++ ++++||++.+++.++.
T Consensus 89 rfs-~~d~IG~v~l~l~~~~ 107 (118)
T cd08677 89 RFS-RHSTLGELRLKLADVS 107 (118)
T ss_pred CCC-CCceEEEEEEcccccc
Confidence 987 7899999999998863
No 37
>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins. A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are
Probab=99.76 E-value=4.8e-18 Score=159.50 Aligned_cols=118 Identities=25% Similarity=0.418 Sum_probs=100.9
Q ss_pred eEEEEEEEeeCCCCCCCCCCCCcEEEEEEC-CeeeccccCCCCCCCeeeeEEEEEecCCCCCCCceEEEEEEeCCCCCCC
Q 001830 5 KLGVEVVSAYELMPKDGQGSSNAFVELHFD-GQKFRTTTKEKDLTPVWNESFYFNISDPHNLSNLALDAYVYNHNRTTNS 83 (1008)
Q Consensus 5 ~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~-~~~~~T~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~~~V~d~~~~~~~ 83 (1008)
.|+|+|++|++|+.+|..|.+||||+++++ .+.++|+++++++||+|||+|.|.+.. ...|.|+|||++.++..
T Consensus 1 ~l~v~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~-----~~~l~i~V~d~~~~~~~ 75 (123)
T cd08382 1 KVRLTVLCADGLAKRDLFRLPDPFAVITVDGGQTHSTDVAKKTLDPKWNEHFDLTVGP-----SSIITIQVFDQKKFKKK 75 (123)
T ss_pred CeEEEEEEecCCCccCCCCCCCcEEEEEECCccceEccEEcCCCCCcccceEEEEeCC-----CCEEEEEEEECCCCCCC
Confidence 389999999999999999999999999997 567999999999999999999999853 35899999999887643
Q ss_pred -CCeeEEEEEeCcccCCCCCceeEEEecccCCC--CcccceEEEEEE
Q 001830 84 -KSFLGKVRLTGTSFVPYSDAVVLHYPLEKRSI--FSRVKGELGLKV 127 (1008)
Q Consensus 84 -d~~lG~~~i~l~~l~~~~~~~~~~~~L~~~~~--~~~~~G~i~~~~ 127 (1008)
|+|||++.+++.++.........||+|++.+. ...+.|+|.+++
T Consensus 76 ~d~~lG~~~i~l~~l~~~~~~~~~~~~l~~~~~~~~~~~~G~v~~~~ 122 (123)
T cd08382 76 DQGFLGCVRIRANAVLPLKDTGYQRLDLRKLKKSDNLSVRGKIVVSL 122 (123)
T ss_pred CCceEeEEEEEHHHccccCCCccceeEeecCCCCCCceEeeEEEEEe
Confidence 68999999999998766655566999976654 456789988875
No 38
>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu
Probab=99.76 E-value=6.2e-18 Score=160.88 Aligned_cols=122 Identities=27% Similarity=0.360 Sum_probs=103.7
Q ss_pred ceEEEEEEEeeCCCCCCC--CCCCCcEEEEEECCeeeccccCCCCCCCeeeeEEEEEecCCCCCCCceEEEEEEeCCCCC
Q 001830 4 LKLGVEVVSAYELMPKDG--QGSSNAFVELHFDGQKFRTTTKEKDLTPVWNESFYFNISDPHNLSNLALDAYVYNHNRTT 81 (1008)
Q Consensus 4 ~~L~V~v~~a~~L~~~d~--~g~~dPyv~v~~~~~~~~T~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~~~V~d~~~~~ 81 (1008)
+.|.|+|++|+||+++|. .|.+||||+|.+++++++|+++++|+||+|||+|.|.+.. .....|.|+|||++..+
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~~~dPyv~v~~~~~~~kT~~~~~t~~P~Wne~f~~~~~~---~~~~~l~i~v~d~~~~~ 77 (128)
T cd04024 1 GVLRVHVVEAKDLAAKDRSGKGKSDPYAILSVGAQRFKTQTIPNTLNPKWNYWCEFPIFS---AQNQLLKLILWDKDRFA 77 (128)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCcCCeEEEEECCEEEecceecCCcCCccCCcEEEEecC---CCCCEEEEEEEECCCCC
Confidence 478999999999999998 8899999999999999999999999999999999999854 23458999999998765
Q ss_pred CCCCeeEEEEEeCcccCC--CCCceeEEEecccCC--CCcccceEEEEEEEe
Q 001830 82 NSKSFLGKVRLTGTSFVP--YSDAVVLHYPLEKRS--IFSRVKGELGLKVFV 129 (1008)
Q Consensus 82 ~~d~~lG~~~i~l~~l~~--~~~~~~~~~~L~~~~--~~~~~~G~i~~~~~~ 129 (1008)
+|++||++.+++.++.. .......||+|.... ....++|+|++++.|
T Consensus 78 -~~~~lG~~~i~l~~~~~~~~~~~~~~w~~L~~~~~~~~~~~~G~i~l~~~~ 128 (128)
T cd04024 78 -GKDYLGEFDIALEEVFADGKTGQSDKWITLKSTRPGKTSVVSGEIHLQFSW 128 (128)
T ss_pred -CCCcceEEEEEHHHhhcccccCccceeEEccCcccCccccccceEEEEEEC
Confidence 78999999999999864 233456799998663 334589999999864
No 39
>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1). RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki
Probab=99.76 E-value=1.5e-17 Score=156.64 Aligned_cols=119 Identities=24% Similarity=0.425 Sum_probs=101.1
Q ss_pred eEEEEEEEeecCCCCCccCCCCCCCCeEEEEEECCEE-EEeeeecCCCCcccccEEEEEeeCCC-ceEEEEEEeCCCCCC
Q 001830 600 GVLELGILNADGLHPMKTRDGRGTADTYCVAKYGHKW-VRTRTIINSLSAKYNEQYTWEVYDPA-TVLTVGVFDNSHIGG 677 (1008)
Q Consensus 600 g~L~v~v~~a~~L~~~~~~~~~g~~dpyv~~~~~~~~-~~T~~~~~~~nP~wne~f~~~v~~~~-~~l~i~V~d~~~~~~ 677 (1008)
..|+|.|++|+||++ .+.+||||++.+++.. .+|++ +++.||.|||.|.|.+..+. ..++|.|||++.++
T Consensus 4 ~~L~V~Vi~A~~L~~------~~~~DPYv~v~l~~~~~~kT~v-~~~~nP~WnE~f~f~~~~~~~~~l~v~v~d~~~~~- 75 (126)
T cd08400 4 RSLQLNVLEAHKLPV------KHVPHPYCVISLNEVKVARTKV-REGPNPVWSEEFVFDDLPPDVNSFTISLSNKAKRS- 75 (126)
T ss_pred eEEEEEEEEeeCCCC------CCCCCeeEEEEECCEeEEEeec-CCCCCCccCCEEEEecCCCCcCEEEEEEEECCCCC-
Confidence 579999999999985 3478999999998854 68887 56899999999999876553 57999999998776
Q ss_pred CCCCCCceeEEEEEEcccccCCCeEEeeEeeeecCCCCCccccEEEEEEEEEe
Q 001830 678 SSGSKDVKIGKVRIRISTLETGRVYTHSYPLLVLHPSGVKKMGELHLAIRFSY 730 (1008)
Q Consensus 678 ~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~G~i~l~~~f~~ 730 (1008)
+|++||++.|+|.++..+...+.||+|......+.+..|+|+|.++|..
T Consensus 76 ----~d~~iG~v~i~l~~l~~~~~~~~W~~L~~~~~~~~~~~G~i~l~l~~~~ 124 (126)
T cd08400 76 ----KDSEIAEVTVQLSKLQNGQETDEWYPLSSASPLKGGEWGSLRIRARYSH 124 (126)
T ss_pred ----CCCeEEEEEEEHhHccCCCcccEeEEcccCCCCCCCcCcEEEEEEEEEc
Confidence 8999999999999999898889999998665434455799999999863
No 40
>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran
Probab=99.76 E-value=1.3e-17 Score=156.33 Aligned_cols=118 Identities=31% Similarity=0.427 Sum_probs=102.7
Q ss_pred ceEEEEEEEeeCCCCCCCCCCCCcEEEEEECCeeeccccCCCCCCCeeeeEEEEEecCCCCCCCceEEEEEEeCCCCCCC
Q 001830 4 LKLGVEVVSAYELMPKDGQGSSNAFVELHFDGQKFRTTTKEKDLTPVWNESFYFNISDPHNLSNLALDAYVYNHNRTTNS 83 (1008)
Q Consensus 4 ~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~~~V~d~~~~~~~ 83 (1008)
+.|.|+|++|+||+..+..+.+||||+|++++..++|+++++|.||.|||+|.|.+.+. ...|.|+|||++... +
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~~T~~~~~t~nP~W~e~f~~~~~~~----~~~l~~~v~d~~~~~-~ 75 (119)
T cd08377 1 GFLQVKVIRASGLAAADIGGKSDPFCVLELVNARLQTHTIYKTLNPEWNKIFTFPIKDI----HDVLEVTVYDEDKDK-K 75 (119)
T ss_pred CEEEEEEEeeeCCCCCCCCCCCCcEEEEEECCEeeecceecCCcCCccCcEEEEEecCc----CCEEEEEEEECCCCC-C
Confidence 47899999999999999999999999999999889999999999999999999998532 258999999998764 7
Q ss_pred CCeeEEEEEeCcccCCCCCceeEEEecccCCCCcccceEEEEEEEe
Q 001830 84 KSFLGKVRLTGTSFVPYSDAVVLHYPLEKRSIFSRVKGELGLKVFV 129 (1008)
Q Consensus 84 d~~lG~~~i~l~~l~~~~~~~~~~~~L~~~~~~~~~~G~i~~~~~~ 129 (1008)
+++||++.+++.++... ...||+|..+....+.+|+|.+++.+
T Consensus 76 ~~~iG~~~~~l~~~~~~---~~~~~~l~~~~~~~~~~G~i~l~~~~ 118 (119)
T cd08377 76 PEFLGKVAIPLLSIKNG---ERKWYALKDKKLRTRAKGSILLEMDV 118 (119)
T ss_pred CceeeEEEEEHHHCCCC---CceEEECcccCCCCceeeEEEEEEEe
Confidence 89999999999887533 24699998876666789999999865
No 41
>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein. The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a
Probab=99.76 E-value=9.7e-18 Score=158.41 Aligned_cols=118 Identities=25% Similarity=0.440 Sum_probs=100.0
Q ss_pred EEEEEEEeeCCCCCCCCCCCCcEEEEEECC--eeeccccCCCCCCCeeeeEEEEEecCCCCCCCceEEEEEEeCCCCCCC
Q 001830 6 LGVEVVSAYELMPKDGQGSSNAFVELHFDG--QKFRTTTKEKDLTPVWNESFYFNISDPHNLSNLALDAYVYNHNRTTNS 83 (1008)
Q Consensus 6 L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~--~~~~T~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~~~V~d~~~~~~~ 83 (1008)
|.|+|++|+||+. ..|.+||||++++++ ++++|+++++|+||+|||.|.|.+... ...|.|+|||++..+ +
T Consensus 1 l~v~v~~A~~L~~--~~g~~dpyv~v~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~----~~~l~~~v~d~~~~~-~ 73 (126)
T cd08678 1 LLVKNIKANGLSE--AAGSSNPYCVLEMDEPPQKYQSSTQKNTSNPFWDEHFLFELSPN----SKELLFEVYDNGKKS-D 73 (126)
T ss_pred CEEEEEEecCCCC--CCCCcCCEEEEEECCCCcEEEeEEEecCCCCccCceEEEEeCCC----CCEEEEEEEECCCCC-C
Confidence 6799999999988 778999999999974 568999999999999999999998532 357999999998875 7
Q ss_pred CCeeEEEEEeCcccCCCCCceeEEEecccCCC-CcccceEEEEEEEeec
Q 001830 84 KSFLGKVRLTGTSFVPYSDAVVLHYPLEKRSI-FSRVKGELGLKVFVTD 131 (1008)
Q Consensus 84 d~~lG~~~i~l~~l~~~~~~~~~~~~L~~~~~-~~~~~G~i~~~~~~~~ 131 (1008)
|+|||++.+++.++...... ..||+|..+.. ...+.|+|.+.+.|..
T Consensus 74 ~~~lG~~~i~l~~l~~~~~~-~~~~~L~~~~~~~~~~~G~l~l~~~~~~ 121 (126)
T cd08678 74 SKFLGLAIVPFDELRKNPSG-RQIFPLQGRPYEGDSVSGSITVEFLFME 121 (126)
T ss_pred CceEEEEEEeHHHhccCCce-eEEEEecCCCCCCCCcceEEEEEEEEec
Confidence 89999999999998765443 45899986532 3468999999998876
No 42
>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.75 E-value=1.6e-17 Score=157.35 Aligned_cols=119 Identities=33% Similarity=0.433 Sum_probs=102.7
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECCeEEEeeeecCCCCCeEeeEEEEEeccC---CcCeEEEEEEecC-CC-CCe
Q 001830 274 LFVRVVKARDLPSKDVTGSLDPFVEVKVGNYKGITKYYEKKQNPEWNEVFAFSRERI---QSSVLEVAVKDKD-VV-KDD 348 (1008)
Q Consensus 274 L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~~~~~t~nP~w~e~f~f~~~~~---~~~~l~i~V~d~d-~~-~d~ 348 (1008)
|+|+|++|++|...+..|.+||||++++++++++|++++++.||.|||.|.|.+.+. ....|.|+|||.+ .+ +++
T Consensus 2 L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~~~~rT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~~~~~~~d~ 81 (127)
T cd04022 2 LVVEVVDAQDLMPKDGQGSSSAYVELDFDGQKKRTRTKPKDLNPVWNEKLVFNVSDPSRLSNLVLEVYVYNDRRSGRRRS 81 (127)
T ss_pred eEEEEEEeeCCCCCCCCCCcCcEEEEEECCEEecceeEcCCCCCccceEEEEEccCHHHccCCeEEEEEeeCCCCcCCCC
Confidence 789999999999999889999999999999999999999999999999999998643 2468999999998 54 799
Q ss_pred eeEEEEEEccccCCCCCCCCCCccEEEEeecCCC-CccceEEEEEEEEe
Q 001830 349 YVGLVRFDLNEVPTRVPPDSPLAAEWYRLEDRKG-EKKKGELMLAVWYG 396 (1008)
Q Consensus 349 ~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~-~~~~G~i~l~~~~~ 396 (1008)
+||++.+++.++... .....+||+|..... ...+|+|.|++++.
T Consensus 82 ~lG~v~i~l~~l~~~----~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~ 126 (127)
T cd04022 82 FLGRVRISGTSFVPP----SEAVVQRYPLEKRGLFSRVRGEIGLKVYIT 126 (127)
T ss_pred eeeEEEEcHHHcCCC----CCccceEeEeeeCCCCCCccEEEEEEEEEc
Confidence 999999999999732 245689999987532 23789999999874
No 43
>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut
Probab=99.75 E-value=7e-18 Score=157.63 Aligned_cols=108 Identities=31% Similarity=0.520 Sum_probs=93.8
Q ss_pred cccccccCcCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eEEEeeeecCCCCCeEeeEEEEEe---ccCC
Q 001830 260 LRASTYDLVEQMRYLFVRVVKARDLPSKDVTGSLDPFVEVKVGN-----YKGITKYYEKKQNPEWNEVFAFSR---ERIQ 331 (1008)
Q Consensus 260 ~~~~~~~~~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~-----~~~kT~~~~~t~nP~w~e~f~f~~---~~~~ 331 (1008)
.+++.|+ .+.|.|+|++|+||+..+ .+.+||||++++.+ .++||++++++.||+|||+|.|.+ .++.
T Consensus 5 ~~~l~y~----~~~L~V~Vi~A~~L~~~~-~~~~DpyVkv~l~~~~~~~~~~kT~v~~~~~nP~wnE~F~f~~~~~~~l~ 79 (122)
T cd08381 5 KLSISYK----NGTLFVMVMHAKNLPLLD-GSDPDPYVKTYLLPDPQKTTKRKTKVVRKTRNPTFNEMLVYDGLPVEDLQ 79 (122)
T ss_pred EEEEEEe----CCEEEEEEEEeeCCCCCC-CCCCCCEEEEEEeeCCccCCceeCCccCCCCCCCcccEEEEecCChHHhC
Confidence 4567776 368999999999999999 89999999999973 467999999999999999999986 3456
Q ss_pred cCeEEEEEEecC-CCCCeeeEEEEEEccccCCCCCCCCCCccEEEEe
Q 001830 332 SSVLEVAVKDKD-VVKDDYVGLVRFDLNEVPTRVPPDSPLAAEWYRL 377 (1008)
Q Consensus 332 ~~~l~i~V~d~d-~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L 377 (1008)
...|.|+|||++ .+++++||++.++|.++... .....||+|
T Consensus 80 ~~~L~~~V~d~d~~~~~~~lG~~~i~l~~l~~~-----~~~~~W~~L 121 (122)
T cd08381 80 QRVLQVSVWSHDSLVENEFLGGVCIPLKKLDLS-----QETEKWYPL 121 (122)
T ss_pred CCEEEEEEEeCCCCcCCcEEEEEEEeccccccC-----CCccceEEC
Confidence 679999999999 67899999999999999864 345799987
No 44
>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety
Probab=99.75 E-value=5.1e-18 Score=159.59 Aligned_cols=106 Identities=26% Similarity=0.406 Sum_probs=90.4
Q ss_pred CceEEEEEEEeeCCCCCCCC-CCCCcEEEEEEC-----CeeeccccCCCCCCCeeeeEEEEEecCCCCCCCceEEEEEEe
Q 001830 3 HLKLGVEVVSAYELMPKDGQ-GSSNAFVELHFD-----GQKFRTTTKEKDLTPVWNESFYFNISDPHNLSNLALDAYVYN 76 (1008)
Q Consensus 3 ~~~L~V~v~~a~~L~~~d~~-g~~dPyv~v~~~-----~~~~~T~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~~~V~d 76 (1008)
...|.|+|++|+||+++|.. |.+||||++++. ..+++|+++++|+||+|||+|.|.+.. +.+....|.|.|||
T Consensus 14 ~~~L~V~vi~a~~L~~~d~~~g~~dpyVkv~l~p~~~~~~~~kT~v~~~t~nP~~nE~f~f~v~~-~~l~~~~L~~~V~d 92 (125)
T cd08393 14 LRELHVHVIQCQDLAAADPKKQRSDPYVKTYLLPDKSNRGKRKTSVKKKTLNPVFNETLRYKVER-EELPTRVLNLSVWH 92 (125)
T ss_pred CCEEEEEEEEeCCCCCcCCCCCCCCcEEEEEEEcCCCccccccCccCcCCCCCccCceEEEECCH-HHhCCCEEEEEEEe
Confidence 46899999999999999975 899999999994 235899999999999999999999853 34566789999999
Q ss_pred CCCCCCCCCeeEEEEEeCcccCCCCCceeEEEecc
Q 001830 77 HNRTTNSKSFLGKVRLTGTSFVPYSDAVVLHYPLE 111 (1008)
Q Consensus 77 ~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~L~ 111 (1008)
++.++ ++++||++.|+|.++... +....||+|+
T Consensus 93 ~~~~~-~~~~iG~~~i~L~~~~~~-~~~~~W~~L~ 125 (125)
T cd08393 93 RDSLG-RNSFLGEVEVDLGSWDWS-NTQPTWYPLQ 125 (125)
T ss_pred CCCCC-CCcEeEEEEEecCccccC-CCCcceEECc
Confidence 98765 789999999999998765 3445699984
No 45
>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=99.75 E-value=7.4e-18 Score=153.56 Aligned_cols=103 Identities=24% Similarity=0.358 Sum_probs=90.3
Q ss_pred eEEEEEEEeeCCCCCCCCCCCCcEEEEEECCeeeccccCCCCCCCeeeeEEEEEecCCCCCCCceEEEEEEeCCCCCCCC
Q 001830 5 KLGVEVVSAYELMPKDGQGSSNAFVELHFDGQKFRTTTKEKDLTPVWNESFYFNISDPHNLSNLALDAYVYNHNRTTNSK 84 (1008)
Q Consensus 5 ~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~~~V~d~~~~~~~d 84 (1008)
.|.|+|++|+||+..+..|.+||||+++++++.++|+++++|.||+|||+|.|.+.++. ...|.|+|||++. |
T Consensus 1 ~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~---~~~l~v~v~d~~~----~ 73 (105)
T cd04050 1 LLFVYLDSAKNLPLAKSTKEPSPYVELTVGKTTQKSKVKERTNNPVWEEGFTFLVRNPE---NQELEIEVKDDKT----G 73 (105)
T ss_pred CEEEEEeeecCCCCcccCCCCCcEEEEEECCEEEeCccccCCCCCcccceEEEEeCCCC---CCEEEEEEEECCC----C
Confidence 48999999999999999999999999999999999999999999999999999996532 3589999999864 7
Q ss_pred CeeEEEEEeCcccCCCC-CceeEEEecccCC
Q 001830 85 SFLGKVRLTGTSFVPYS-DAVVLHYPLEKRS 114 (1008)
Q Consensus 85 ~~lG~~~i~l~~l~~~~-~~~~~~~~L~~~~ 114 (1008)
++||++.++|.++.... .....||+|++++
T Consensus 74 ~~iG~~~i~l~~l~~~~~~~~~~w~~L~~~g 104 (105)
T cd04050 74 KSLGSLTLPLSELLKEPDLTLDQPFPLDNSG 104 (105)
T ss_pred CccEEEEEEHHHhhccccceeeeeEecCCCC
Confidence 89999999999987553 3467899998753
No 46
>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4. RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a
Probab=99.75 E-value=1.4e-17 Score=156.87 Aligned_cols=118 Identities=29% Similarity=0.463 Sum_probs=99.3
Q ss_pred eEEEEEEEeeCCCCCCCCCCCCcEEEEEECCeeeccccCCCCCCCeeeeEEEEEecCCCCCCCceEEEEEEeCCCCCCCC
Q 001830 5 KLGVEVVSAYELMPKDGQGSSNAFVELHFDGQKFRTTTKEKDLTPVWNESFYFNISDPHNLSNLALDAYVYNHNRTTNSK 84 (1008)
Q Consensus 5 ~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~~~V~d~~~~~~~d 84 (1008)
+|+|+|++|++|+++|..|.+||||+|++++..++|+++++|+||+|||+|.|.+.... ...|.|+|||++.++ ++
T Consensus 1 ~L~v~vi~a~~L~~~d~~~~~DPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~---~~~l~~~v~d~~~~~-~~ 76 (123)
T cd04025 1 RLRCHVLEARDLAPKDRNGTSDPFVRVFYNGQTLETSVVKKSCYPRWNEVFEFELMEGA---DSPLSVEVWDWDLVS-KN 76 (123)
T ss_pred CEEEEEEEeeCCCCCCCCCCcCceEEEEECCEEEeceeecCCCCCccCcEEEEEcCCCC---CCEEEEEEEECCCCC-CC
Confidence 58999999999999998899999999999999999999999999999999999985422 457999999998765 78
Q ss_pred CeeEEEEEeCcccCCCCCceeEEEecccCCC----CcccceEEEEEE
Q 001830 85 SFLGKVRLTGTSFVPYSDAVVLHYPLEKRSI----FSRVKGELGLKV 127 (1008)
Q Consensus 85 ~~lG~~~i~l~~l~~~~~~~~~~~~L~~~~~----~~~~~G~i~~~~ 127 (1008)
+|||++.+++.++..... ...||.|.+.+. ..+..|.|++.|
T Consensus 77 ~~iG~~~~~l~~l~~~~~-~~~w~~L~~~~~~~~~~~~~~G~l~~~~ 122 (123)
T cd04025 77 DFLGKVVFSIQTLQQAKQ-EEGWFRLLPDPRAEEESGGNLGSLRLKV 122 (123)
T ss_pred cEeEEEEEEHHHcccCCC-CCCEEECCCCCCCCccccCceEEEEEEe
Confidence 999999999999865433 356999986432 234678888876
No 47
>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1). RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki
Probab=99.75 E-value=2e-17 Score=155.79 Aligned_cols=120 Identities=20% Similarity=0.287 Sum_probs=98.3
Q ss_pred CceEEEEEEEeeCCCCCCCCCCCCcEEEEEECCee-eccccCCCCCCCeeeeEEEEEecCCCCCCCceEEEEEEeCCCCC
Q 001830 3 HLKLGVEVVSAYELMPKDGQGSSNAFVELHFDGQK-FRTTTKEKDLTPVWNESFYFNISDPHNLSNLALDAYVYNHNRTT 81 (1008)
Q Consensus 3 ~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~~-~~T~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~~~V~d~~~~~ 81 (1008)
...|+|+|++|+||+.+ +.+||||+|.+++.+ .+|++ ++++||+|||+|.|.+..++ . ..|.|.|||++.++
T Consensus 3 ~~~L~V~Vi~A~~L~~~---~~~DPYv~v~l~~~~~~kT~v-~~~~nP~WnE~f~f~~~~~~-~--~~l~v~v~d~~~~~ 75 (126)
T cd08400 3 VRSLQLNVLEAHKLPVK---HVPHPYCVISLNEVKVARTKV-REGPNPVWSEEFVFDDLPPD-V--NSFTISLSNKAKRS 75 (126)
T ss_pred eeEEEEEEEEeeCCCCC---CCCCeeEEEEECCEeEEEeec-CCCCCCccCCEEEEecCCCC-c--CEEEEEEEECCCCC
Confidence 35799999999999875 478999999998754 78887 46899999999999865332 1 36899999998875
Q ss_pred CCCCeeEEEEEeCcccCCCCCceeEEEecccCCC-CcccceEEEEEEEeec
Q 001830 82 NSKSFLGKVRLTGTSFVPYSDAVVLHYPLEKRSI-FSRVKGELGLKVFVTD 131 (1008)
Q Consensus 82 ~~d~~lG~~~i~l~~l~~~~~~~~~~~~L~~~~~-~~~~~G~i~~~~~~~~ 131 (1008)
+|++||++.|+|.++.. +.....||+|++.+. .....|+|++++.|.+
T Consensus 76 -~d~~iG~v~i~l~~l~~-~~~~~~W~~L~~~~~~~~~~~G~i~l~l~~~~ 124 (126)
T cd08400 76 -KDSEIAEVTVQLSKLQN-GQETDEWYPLSSASPLKGGEWGSLRIRARYSH 124 (126)
T ss_pred -CCCeEEEEEEEHhHccC-CCcccEeEEcccCCCCCCCcCcEEEEEEEEEc
Confidence 89999999999999876 344567999987643 3467799999998866
No 48
>cd08375 C2_Intersectin C2 domain present in Intersectin. A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro
Probab=99.75 E-value=2.4e-17 Score=156.74 Aligned_cols=118 Identities=25% Similarity=0.439 Sum_probs=100.8
Q ss_pred CceeEEEEEEEeecCCCCCccCCCCCCCCeEEEEEECCEEEEeeeecCCCCcccccEEEEEeeCC-CceEEEEEEeCCCC
Q 001830 597 PSIGVLELGILNADGLHPMKTRDGRGTADTYCVAKYGHKWVRTRTIINSLSAKYNEQYTWEVYDP-ATVLTVGVFDNSHI 675 (1008)
Q Consensus 597 ~~~g~L~v~v~~a~~L~~~~~~~~~g~~dpyv~~~~~~~~~~T~~~~~~~nP~wne~f~~~v~~~-~~~l~i~V~d~~~~ 675 (1008)
...|.|+|+|++|++|+++ +..|.+||||++.+++..++|++++++.||.|||.|.|.+.++ ...|.|+|||++.+
T Consensus 12 ~~~G~L~V~Vi~A~~L~~~---d~~g~~DPYv~v~~~~~~~kT~vi~~t~nP~Wne~f~f~v~~~~~~~l~i~V~D~d~~ 88 (136)
T cd08375 12 SGIGRLMVVIVEGRDLKPC---NSNGKSDPYCEVSMGSQEHKTKVVSDTLNPKWNSSMQFFVKDLEQDVLCITVFDRDFF 88 (136)
T ss_pred CCcEEEEEEEEEeeCCCCC---CCCCCcCcEEEEEECCEeeeccccCCCCCCccCceEEEEecCccCCEEEEEEEECCCC
Confidence 5679999999999999976 4578999999999999999999999999999999999999875 46799999999977
Q ss_pred CCCCCCCCceeEEEEEEcccccC-----CCeEEeeEeeeecCCCCCccccEEEEEEEE
Q 001830 676 GGSSGSKDVKIGKVRIRISTLET-----GRVYTHSYPLLVLHPSGVKKMGELHLAIRF 728 (1008)
Q Consensus 676 ~~~~~~~d~~lG~~~i~l~~l~~-----~~~~~~~~~L~~~~~~~~~~~G~i~l~~~f 728 (1008)
+ +|++||++.|+|+++.. ......|.++. + +..|+|+|++.|
T Consensus 89 ~-----~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~-----~-~~~g~i~l~~~~ 135 (136)
T cd08375 89 S-----PDDFLGRTEIRVADILKETKESKGPITKRLLLH-----E-VPTGEVVVKLDL 135 (136)
T ss_pred C-----CCCeeEEEEEEHHHhccccccCCCcEEEEeccc-----c-ccceeEEEEEEe
Confidence 6 89999999999999865 23344566652 3 345999999886
No 49
>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids
Probab=99.75 E-value=6.3e-18 Score=158.74 Aligned_cols=106 Identities=22% Similarity=0.338 Sum_probs=90.9
Q ss_pred CceEEEEEEEeeCCCCCCCC-CCCCcEEEEEEC-----CeeeccccCCCCCCCeeeeEEEEEecCCCCCCCceEEEEEEe
Q 001830 3 HLKLGVEVVSAYELMPKDGQ-GSSNAFVELHFD-----GQKFRTTTKEKDLTPVWNESFYFNISDPHNLSNLALDAYVYN 76 (1008)
Q Consensus 3 ~~~L~V~v~~a~~L~~~d~~-g~~dPyv~v~~~-----~~~~~T~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~~~V~d 76 (1008)
.+.|.|+|++|+||+++|.. |.+||||++++. ..+++|+++++++||+|||+|.|.+.. +.+....|.|.|||
T Consensus 14 ~~~L~V~V~~a~nL~~~d~~~g~~dpYVkv~llp~~~~~~k~kT~v~~~t~nPvfNE~F~f~v~~-~~l~~~~L~v~V~~ 92 (128)
T cd08392 14 TSCLEITIKACRNLAYGDEKKKKCHPYVKVCLLPDKSHNSKRKTAVKKGTVNPVFNETLKYVVEA-DLLSSRQLQVSVWH 92 (128)
T ss_pred CCEEEEEEEecCCCCccCCCCCCCCeEEEEEEEeCCcccceeecccccCCCCCccceEEEEEcCH-HHhCCcEEEEEEEe
Confidence 47899999999999999975 999999999985 236799999999999999999999854 44566799999999
Q ss_pred CCCCCCCCCeeEEEEEeCcccCCC--CCceeEEEec
Q 001830 77 HNRTTNSKSFLGKVRLTGTSFVPY--SDAVVLHYPL 110 (1008)
Q Consensus 77 ~~~~~~~d~~lG~~~i~l~~l~~~--~~~~~~~~~L 110 (1008)
++.++ ++++||++.|+|.++... ......||+|
T Consensus 93 ~~~~~-~~~~lG~~~i~L~~~~~~~~~~~~~~W~~l 127 (128)
T cd08392 93 SRTLK-RRVFLGEVLIPLADWDFEDTDSQRFLWYPL 127 (128)
T ss_pred CCCCc-CcceEEEEEEEcCCcccCCCCccccceEEC
Confidence 98775 789999999999998554 3456679998
No 50
>cd08375 C2_Intersectin C2 domain present in Intersectin. A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro
Probab=99.75 E-value=2.4e-17 Score=156.84 Aligned_cols=122 Identities=25% Similarity=0.431 Sum_probs=103.4
Q ss_pred ceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEEEeeeecCCCCCeEeeEEEEEeccCCcCeEEEEEEecC-CCCCe
Q 001830 270 QMRYLFVRVVKARDLPSKDVTGSLDPFVEVKVGNYKGITKYYEKKQNPEWNEVFAFSRERIQSSVLEVAVKDKD-VVKDD 348 (1008)
Q Consensus 270 ~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~~~~~t~nP~w~e~f~f~~~~~~~~~l~i~V~d~d-~~~d~ 348 (1008)
..|.|+|+|++|++|...|..|.+||||++.++++.++|++++++.||.|||+|.|.+.+.....|.|+|||++ .++|+
T Consensus 13 ~~G~L~V~Vi~A~~L~~~d~~g~~DPYv~v~~~~~~~kT~vi~~t~nP~Wne~f~f~v~~~~~~~l~i~V~D~d~~~~d~ 92 (136)
T cd08375 13 GIGRLMVVIVEGRDLKPCNSNGKSDPYCEVSMGSQEHKTKVVSDTLNPKWNSSMQFFVKDLEQDVLCITVFDRDFFSPDD 92 (136)
T ss_pred CcEEEEEEEEEeeCCCCCCCCCCcCcEEEEEECCEeeeccccCCCCCCccCceEEEEecCccCCEEEEEEEECCCCCCCC
Confidence 45899999999999999998999999999999999999999999999999999999998776789999999999 67899
Q ss_pred eeEEEEEEccccCCCCCCCCCCccEEEEeecCCCCccceEEEEEEEE
Q 001830 349 YVGLVRFDLNEVPTRVPPDSPLAAEWYRLEDRKGEKKKGELMLAVWY 395 (1008)
Q Consensus 349 ~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~G~i~l~~~~ 395 (1008)
+||++.+++.++............+|..+... ..|+|++++.+
T Consensus 93 ~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~----~~g~i~l~~~~ 135 (136)
T cd08375 93 FLGRTEIRVADILKETKESKGPITKRLLLHEV----PTGEVVVKLDL 135 (136)
T ss_pred eeEEEEEEHHHhccccccCCCcEEEEeccccc----cceeEEEEEEe
Confidence 99999999999986322222334466666422 45999999865
No 51
>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein. The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a
Probab=99.75 E-value=2.7e-17 Score=155.40 Aligned_cols=119 Identities=19% Similarity=0.312 Sum_probs=102.2
Q ss_pred EEEEEEeecCCCCCccCCCCCCCCeEEEEEECC--EEEEeeeecCCCCcccccEEEEEeeCCCceEEEEEEeCCCCCCCC
Q 001830 602 LELGILNADGLHPMKTRDGRGTADTYCVAKYGH--KWVRTRTIINSLSAKYNEQYTWEVYDPATVLTVGVFDNSHIGGSS 679 (1008)
Q Consensus 602 L~v~v~~a~~L~~~~~~~~~g~~dpyv~~~~~~--~~~~T~~~~~~~nP~wne~f~~~v~~~~~~l~i~V~d~~~~~~~~ 679 (1008)
|.|+|++|+||+. ..|.+||||++.++. +.++|++++++.||.|||.|.|.+......|.|+|||++..+
T Consensus 1 l~v~v~~A~~L~~-----~~g~~dpyv~v~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~l~~~v~d~~~~~--- 72 (126)
T cd08678 1 LLVKNIKANGLSE-----AAGSSNPYCVLEMDEPPQKYQSSTQKNTSNPFWDEHFLFELSPNSKELLFEVYDNGKKS--- 72 (126)
T ss_pred CEEEEEEecCCCC-----CCCCcCCEEEEEECCCCcEEEeEEEecCCCCccCceEEEEeCCCCCEEEEEEEECCCCC---
Confidence 5789999999984 468999999999974 678999999999999999999999766778999999999766
Q ss_pred CCCCceeEEEEEEcccccCCCeEEeeEeeeecCCCCCccccEEEEEEEEEe
Q 001830 680 GSKDVKIGKVRIRISTLETGRVYTHSYPLLVLHPSGVKKMGELHLAIRFSY 730 (1008)
Q Consensus 680 ~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~G~i~l~~~f~~ 730 (1008)
+|++||++.++++++..+.....||+|......+.+..|+|++++.|..
T Consensus 73 --~~~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~G~l~l~~~~~~ 121 (126)
T cd08678 73 --DSKFLGLAIVPFDELRKNPSGRQIFPLQGRPYEGDSVSGSITVEFLFME 121 (126)
T ss_pred --CCceEEEEEEeHHHhccCCceeEEEEecCCCCCCCCcceEEEEEEEEec
Confidence 8999999999999998877778999997543333345799999999854
No 52
>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins. Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr
Probab=99.74 E-value=1.4e-17 Score=155.83 Aligned_cols=117 Identities=32% Similarity=0.497 Sum_probs=101.2
Q ss_pred eEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEEEeeeecC-CCCCeEeeEEEEEeccCCcCeEEEEEEecCCCCCeee
Q 001830 272 RYLFVRVVKARDLPSKDVTGSLDPFVEVKVGNYKGITKYYEK-KQNPEWNEVFAFSRERIQSSVLEVAVKDKDVVKDDYV 350 (1008)
Q Consensus 272 ~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~~~~~-t~nP~w~e~f~f~~~~~~~~~l~i~V~d~d~~~d~~l 350 (1008)
|.|+|+|++|++|+..+..+.+||||++++++.+.+|+++.+ +.||+|||.|.|.+.......|.|+|||++..++++|
T Consensus 1 g~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~kT~~~~~~~~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~~~~~i 80 (118)
T cd08681 1 GTLVVVVLKARNLPNKRKLDKQDPYCVLRIGGVTKKTKTDFRGGQHPEWDEELRFEITEDKKPILKVAVFDDDKRKPDLI 80 (118)
T ss_pred CEEEEEEEEccCCCCCCcCCCCCceEEEEECCCccccccccCCCCCCccCceEEEEecCCCCCEEEEEEEeCCCCCCcce
Confidence 479999999999999998899999999999998899998754 7999999999999977556789999999985459999
Q ss_pred EEEEEEccccCCCCCCCCCCccEEEEeecCCCCccceEEEEEEEE
Q 001830 351 GLVRFDLNEVPTRVPPDSPLAAEWYRLEDRKGEKKKGELMLAVWY 395 (1008)
Q Consensus 351 G~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~G~i~l~~~~ 395 (1008)
|++.+++.++..+ ....+|++|.... ...|+|++++.|
T Consensus 81 G~~~~~l~~~~~~-----~~~~~w~~L~~~~--~~~G~i~l~l~f 118 (118)
T cd08681 81 GDTEVDLSPALKE-----GEFDDWYELTLKG--RYAGEVYLELTF 118 (118)
T ss_pred EEEEEecHHHhhc-----CCCCCcEEeccCC--cEeeEEEEEEEC
Confidence 9999999998764 2357999998643 357999999875
No 53
>cd08680 C2_Kibra C2 domain found in Human protein Kibra. Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom
Probab=99.74 E-value=7.9e-18 Score=156.41 Aligned_cols=106 Identities=23% Similarity=0.261 Sum_probs=92.7
Q ss_pred CceEEEEEEEeeCCCCCCCCCCCCcEEEEEEC------CeeeccccCCCCCCCeeeeEEEEEecCCCCCCCceEEEEEEe
Q 001830 3 HLKLGVEVVSAYELMPKDGQGSSNAFVELHFD------GQKFRTTTKEKDLTPVWNESFYFNISDPHNLSNLALDAYVYN 76 (1008)
Q Consensus 3 ~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~------~~~~~T~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~~~V~d 76 (1008)
.+.|.|+|++|+||++.+..|.+||||++++. +.+++|+++++++||+|||+|.|.+. .+++....|.|.|||
T Consensus 13 ~~~L~V~V~~arnL~~~~~~~~~dpyVKv~Llp~~~~~~~~~kT~v~~~t~nPvfnE~F~f~v~-~~~L~~~~L~~~V~~ 91 (124)
T cd08680 13 DSSLVISVEQLRNLSALSIPENSKVYVRVALLPCSSSTSCLFRTKALEDQDKPVFNEVFRVPIS-STKLYQKTLQVDVCS 91 (124)
T ss_pred CCEEEEEEeEecCCcccccCCCCCeEEEEEEccCCCCCCceEEcCccCCCCCCccccEEEEECC-HHHhhcCEEEEEEEe
Confidence 46899999999999999988999999999984 23689999999999999999999986 466778899999999
Q ss_pred CCCCCCCCCeeEEEEEeCcccCCCCCceeEEEec
Q 001830 77 HNRTTNSKSFLGKVRLTGTSFVPYSDAVVLHYPL 110 (1008)
Q Consensus 77 ~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~L 110 (1008)
++.+. ++++||++.|+|.++...++....||+|
T Consensus 92 ~~~~~-~~~~lG~~~i~L~~~~~~~~~~~~Wy~l 124 (124)
T cd08680 92 VGPDQ-QEECLGGAQISLADFESSEEMSTKWYNL 124 (124)
T ss_pred CCCCC-ceeEEEEEEEEhhhccCCCccccccccC
Confidence 98765 7899999999999997666556678876
No 54
>cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1). NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C
Probab=99.74 E-value=2.4e-17 Score=155.70 Aligned_cols=117 Identities=24% Similarity=0.384 Sum_probs=98.9
Q ss_pred eEEEEEEEeeCCCCCCCCCCCCcEEEEEEC-------------CeeeccccCCCCCCCee-eeEEEEEecCCCCCCCceE
Q 001830 5 KLGVEVVSAYELMPKDGQGSSNAFVELHFD-------------GQKFRTTTKEKDLTPVW-NESFYFNISDPHNLSNLAL 70 (1008)
Q Consensus 5 ~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~-------------~~~~~T~~~~~t~nP~W-ne~f~f~v~~~~~~~~~~l 70 (1008)
...|++++|+||+ +|..|.+||||++.+. +++++|+++++|+||+| ||+|.|.+.. + ..|
T Consensus 2 ~~~~~~~~A~~L~-~~~fg~~DPyvki~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~W~nE~f~f~v~~-~----~~L 75 (137)
T cd08691 2 SFSLSGLQARNLK-KGMFFNPDPYVKISIQPGKRHIFPALPHHGQECRTSIVENTINPVWHREQFVFVGLP-T----DVL 75 (137)
T ss_pred EEEEEEEEeCCCC-CccCCCCCceEEEEEECCCcccccccccccceeeeeeEcCCCCCceEceEEEEEcCC-C----CEE
Confidence 3679999999998 7888999999999995 23689999999999999 9999999842 2 379
Q ss_pred EEEEEeCCCCCC--CCCeeEEEEEeCcccCCCCC--ceeEEEecccCCCCcccceEEEEEE
Q 001830 71 DAYVYNHNRTTN--SKSFLGKVRLTGTSFVPYSD--AVVLHYPLEKRSIFSRVKGELGLKV 127 (1008)
Q Consensus 71 ~~~V~d~~~~~~--~d~~lG~~~i~l~~l~~~~~--~~~~~~~L~~~~~~~~~~G~i~~~~ 127 (1008)
.|+|||++..++ .|++||++.+++.++..... ....||+|++++..+.++|+|.+++
T Consensus 76 ~v~V~D~~~~~~~~~~d~lG~~~i~l~~l~~~~~~~~~~~~~~l~k~~~~s~v~G~~~l~~ 136 (137)
T cd08691 76 EIEVKDKFAKSRPIIRRFLGKLSIPVQRLLERHAIGDQELSYTLGRRTPTDHVSGQLTFRF 136 (137)
T ss_pred EEEEEecCCCCCccCCceEEEEEEEHHHhcccccCCceEEEEECCcCCCCCcEEEEEEEEe
Confidence 999999865432 27999999999999865543 3667999999999999999999886
No 55
>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran
Probab=99.74 E-value=3.5e-17 Score=153.42 Aligned_cols=118 Identities=27% Similarity=0.450 Sum_probs=102.9
Q ss_pred eEEEEEEEeecCCCCCccCCCCCCCCeEEEEEECCEEEEeeeecCCCCcccccEEEEEeeCCCceEEEEEEeCCCCCCCC
Q 001830 600 GVLELGILNADGLHPMKTRDGRGTADTYCVAKYGHKWVRTRTIINSLSAKYNEQYTWEVYDPATVLTVGVFDNSHIGGSS 679 (1008)
Q Consensus 600 g~L~v~v~~a~~L~~~~~~~~~g~~dpyv~~~~~~~~~~T~~~~~~~nP~wne~f~~~v~~~~~~l~i~V~d~~~~~~~~ 679 (1008)
|.|.|+|++|+||+.+ +..+.+||||++.+++..++|++++++.||.|||+|.|.+.+....|.|+|||++.++
T Consensus 1 g~l~v~v~~a~~L~~~---~~~~~~dPyv~v~~~~~~~~T~~~~~t~nP~W~e~f~~~~~~~~~~l~~~v~d~~~~~--- 74 (119)
T cd08377 1 GFLQVKVIRASGLAAA---DIGGKSDPFCVLELVNARLQTHTIYKTLNPEWNKIFTFPIKDIHDVLEVTVYDEDKDK--- 74 (119)
T ss_pred CEEEEEEEeeeCCCCC---CCCCCCCcEEEEEECCEeeecceecCCcCCccCcEEEEEecCcCCEEEEEEEECCCCC---
Confidence 7899999999999975 4567899999999999999999999999999999999999877789999999998766
Q ss_pred CCCCceeEEEEEEcccccCCCeEEeeEeeeecCCCCCccccEEEEEEEE
Q 001830 680 GSKDVKIGKVRIRISTLETGRVYTHSYPLLVLHPSGVKKMGELHLAIRF 728 (1008)
Q Consensus 680 ~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~G~i~l~~~f 728 (1008)
++++||++.+++.++..+. ..||+|......+. ..|+|.++++|
T Consensus 75 --~~~~iG~~~~~l~~~~~~~--~~~~~l~~~~~~~~-~~G~i~l~~~~ 118 (119)
T cd08377 75 --KPEFLGKVAIPLLSIKNGE--RKWYALKDKKLRTR-AKGSILLEMDV 118 (119)
T ss_pred --CCceeeEEEEEHHHCCCCC--ceEEECcccCCCCc-eeeEEEEEEEe
Confidence 8999999999999998775 58999975443333 45999999876
No 56
>PF04842 DUF639: Plant protein of unknown function (DUF639); InterPro: IPR006927 The sequences in this family are plant proteins of unknown function.
Probab=99.74 E-value=2.1e-17 Score=185.75 Aligned_cols=179 Identities=20% Similarity=0.322 Sum_probs=148.1
Q ss_pred hhhhHHHHHHHHHHHhHHHHHHHHhhccccccCchhHHHHHHHHHHHHHhcch--hHHHHHHHHHHHHhhcccc-CCCCC
Q 001830 799 MRRSKANFFRLMSVFSGLFAAGKWFGEVCMWRNPITTVLVHILFVMLVYFPEL--ILPTVFLYMFMIGLWNYRY-RPRYP 875 (1008)
Q Consensus 799 ~~~~~~n~~rl~~~~~~~~~~~~~i~~l~~W~~p~~t~~~~~~~~~~~~~~~l--~lp~~~l~l~~~~~~~~~~-~~~~~ 875 (1008)
...+-+|+..|++++.|+..++.+++.+.+|++|.+|+.|++++++++|..|+ ++|++++++++.|+|.... +.+.+
T Consensus 482 veGI~tNvav~kELL~Pl~~i~~~~~~l~~We~P~kt~~Fl~~~~~iI~r~wl~Y~~p~~Ll~~a~~Ml~~r~~~~~g~~ 561 (683)
T PF04842_consen 482 VEGIDTNVAVMKELLFPLIEIAKWLQKLASWEEPLKTLVFLALFLYIIYRGWLGYIFPAFLLFSAVFMLWLRYQGRLGKS 561 (683)
T ss_pred hcCCccHHHHHHhccccHHHHHHHHHHHhhccCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCc
Confidence 44556899999999999999999999999999999999999999999999887 7999999999999985443 22211
Q ss_pred CCCCCcccccccCCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhccccCChhhHHHHHHH
Q 001830 876 PHMNTRISYADAVHPDELDEEFDTFPTTRSPDIVRMRYDRLRSVAGRIQTVVGDVATQGERIQALLSWRDPRAAAIFVIF 955 (1008)
Q Consensus 876 ~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~~vq~~l~~~a~~~e~~~~l~~w~~p~~t~~~~~~ 955 (1008)
-++....+++...+. +++-++|+.+.++++.|+.++..+.|+|+++.|..|++|..++++
T Consensus 562 ------------------~~~v~V~~pP~~nTv--EqilalQ~Ais~~E~~iQ~~NI~LLKiRsllls~~PqaT~~Va~~ 621 (683)
T PF04842_consen 562 ------------------FGEVTVRDPPPKNTV--EQILALQEAISQLEEYIQAANIVLLKIRSLLLSKFPQATNKVALA 621 (683)
T ss_pred ------------------cceEEecCCCCccHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence 122222222233344 778889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhHHHHHHhhhhhhhcCCCCCCCCCC----------chhhhhhcCCC
Q 001830 956 CLVAAVVLYVTPFQLLALLAGCYIMRHPRFRHKTPS----------APINFFRRLPA 1002 (1008)
Q Consensus 956 ~~~~~~~~~~iP~r~i~l~~g~~~~~~P~~~~~~~~----------~~~~~~~r~ps 1002 (1008)
++++|+++.++|+||++++..+. .|++.+|. .+..|+-++|.
T Consensus 622 Ll~~A~~LavvP~kyil~~v~l~-----~FTre~~~Rr~s~er~~RRlrEWW~sIPA 673 (683)
T PF04842_consen 622 LLGLAAVLAVVPFKYILLFVFLE-----VFTRESPFRRESSERFNRRLREWWDSIPA 673 (683)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-----HHhccCCCchhhHHHHHHHHHHHHhhCCc
Confidence 99999999999999999999998 44444442 46667777775
No 57
>cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.74 E-value=2.3e-17 Score=157.73 Aligned_cols=124 Identities=18% Similarity=0.318 Sum_probs=100.4
Q ss_pred ceEEEEEEEeeCCCCCCCCCCCCcEEEEEECCeeeccccCCCCCCCeeeeEEEEEecCC----CCC--CCceEEEEEEeC
Q 001830 4 LKLGVEVVSAYELMPKDGQGSSNAFVELHFDGQKFRTTTKEKDLTPVWNESFYFNISDP----HNL--SNLALDAYVYNH 77 (1008)
Q Consensus 4 ~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~~~t~nP~Wne~f~f~v~~~----~~~--~~~~l~~~V~d~ 77 (1008)
++|+|+|++|++|+.+|..|.+||||+|.+++++++|+++++|+||+|||.|.|.+... +.+ ....|.|+|||+
T Consensus 1 ~~l~v~V~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~v~~~t~nP~Wne~~~f~~~~~~~~~~~~~~~~~~l~v~V~d~ 80 (135)
T cd04017 1 FQLRAYIYQARDLLAADKSGLSDPFARVSFLNQSQETEVIKETLSPTWDQTLIFDEVELYGSPEEIAQNPPLVVVELFDQ 80 (135)
T ss_pred CEEEEEEEEeecCcCCCCCCCCCCEEEEEECCeeeEeeeEcCCCCCccCcEEEEeeeeccCChHHhhcCCCEEEEEEEeC
Confidence 57999999999999999999999999999999999999999999999999999985321 111 124699999999
Q ss_pred CCCCCCCCeeEEEEE-eCcccCC--CCCceeEEEecccCCCCcccceEEEEEEEeec
Q 001830 78 NRTTNSKSFLGKVRL-TGTSFVP--YSDAVVLHYPLEKRSIFSRVKGELGLKVFVTD 131 (1008)
Q Consensus 78 ~~~~~~d~~lG~~~i-~l~~l~~--~~~~~~~~~~L~~~~~~~~~~G~i~~~~~~~~ 131 (1008)
|..+ +|+|||++.+ ++..+.. .......||+|.+.+ ...|+|.+++.+..
T Consensus 81 d~~~-~d~~iG~~~i~~~~~~~~~~~~~~~~~W~~L~~~~---~~~Geil~~~~~~~ 133 (135)
T cd04017 81 DSVG-KDEFLGRSVAKPLVKLDLEEDFPPKLQWFPIYKGG---QSAGELLAAFELIE 133 (135)
T ss_pred cCCC-CCccceEEEeeeeeecccCCCCCCCceEEEeecCC---CchhheeEEeEEEE
Confidence 8875 7899999997 4444433 234556899998654 47899999998765
No 58
>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei
Probab=99.74 E-value=4e-17 Score=152.17 Aligned_cols=113 Identities=23% Similarity=0.424 Sum_probs=101.0
Q ss_pred EEEEEEeecCCCCCccCCCCCCCCeEEEEEECCEEEEeeeecCCCCcccccEEEEEeeCC-CceEEEEEEeCCCCCCCCC
Q 001830 602 LELGILNADGLHPMKTRDGRGTADTYCVAKYGHKWVRTRTIINSLSAKYNEQYTWEVYDP-ATVLTVGVFDNSHIGGSSG 680 (1008)
Q Consensus 602 L~v~v~~a~~L~~~~~~~~~g~~dpyv~~~~~~~~~~T~~~~~~~nP~wne~f~~~v~~~-~~~l~i~V~d~~~~~~~~~ 680 (1008)
|+|.|++|+||+++ +..|.+||||++.++++..+|++++++.||.|||.|.|.+..+ ...|.|+|||++.++
T Consensus 2 ~~V~v~~a~~L~~~---~~~~~~dPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~v~v~d~~~~~---- 74 (116)
T cd08376 2 VTIVLVEGKNLPPM---DDNGLSDPYVKFRLGNEKYKSKVCSKTLNPQWLEQFDLHLFDDQSQILEIEVWDKDTGK---- 74 (116)
T ss_pred EEEEEEEEECCCCC---CCCCCCCcEEEEEECCEeEecccccCCCCCceeEEEEEEecCCCCCEEEEEEEECCCCC----
Confidence 78999999999975 4468899999999999999999999999999999999999876 678999999999776
Q ss_pred CCCceeEEEEEEcccccCCCeEEeeEeeeecCCCCCccccEEEEEEEEE
Q 001830 681 SKDVKIGKVRIRISTLETGRVYTHSYPLLVLHPSGVKKMGELHLAIRFS 729 (1008)
Q Consensus 681 ~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~G~i~l~~~f~ 729 (1008)
++++||++.++|+++..+.....||+|.. ..|+|++++.++
T Consensus 75 -~~~~iG~~~~~l~~l~~~~~~~~w~~L~~-------~~G~~~~~~~~~ 115 (116)
T cd08376 75 -KDEFIGRCEIDLSALPREQTHSLELELED-------GEGSLLLLLTLT 115 (116)
T ss_pred -CCCeEEEEEEeHHHCCCCCceEEEEEccC-------CCcEEEEEEEec
Confidence 89999999999999988888999999952 149999987763
No 59
>cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.74 E-value=2e-17 Score=157.20 Aligned_cols=106 Identities=24% Similarity=0.333 Sum_probs=88.5
Q ss_pred CceEEEEEEEeeCCCCCC-CCCCCCcEEEEEEC--C---eeeccccCCCCCCCeeeeEEEEEecCCCCCCCceEEEEEE-
Q 001830 3 HLKLGVEVVSAYELMPKD-GQGSSNAFVELHFD--G---QKFRTTTKEKDLTPVWNESFYFNISDPHNLSNLALDAYVY- 75 (1008)
Q Consensus 3 ~~~L~V~v~~a~~L~~~d-~~g~~dPyv~v~~~--~---~~~~T~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~~~V~- 75 (1008)
.+.|.|+|++|+||+++| ..|.+||||++++. + .+++|+++++|+||+|||+|.|.+. +.+..|.|.||
T Consensus 28 ~~~L~V~Vi~ArnL~~~~~~~g~sDPYVKv~Llp~~~~~~k~KT~v~kktlnPvfNE~F~f~v~----l~~~~L~v~V~~ 103 (146)
T cd04028 28 KGQLEVEVIRARGLVQKPGSKVLPAPYVKVYLLEGKKCIAKKKTKIARKTLDPLYQQQLVFDVS----PTGKTLQVIVWG 103 (146)
T ss_pred CCEEEEEEEEeeCCCcccCCCCCcCCeEEEEEECCCccccceeceecCCCCCCccCCeEEEEEc----CCCCEEEEEEEe
Confidence 468999999999999875 57899999999994 2 2689999999999999999999985 45568999999
Q ss_pred eCCCCCCCCCeeEEEEEeCcccCCCCCceeEEEecccCC
Q 001830 76 NHNRTTNSKSFLGKVRLTGTSFVPYSDAVVLHYPLEKRS 114 (1008)
Q Consensus 76 d~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~L~~~~ 114 (1008)
|++.+ .+++|||++.|+|.++.... ....||+|.+..
T Consensus 104 d~~~~-~~~~~iG~~~i~L~~l~~~~-~~~~Wy~L~~~~ 140 (146)
T cd04028 104 DYGRM-DKKVFMGVAQILLDDLDLSN-LVIGWYKLFPTS 140 (146)
T ss_pred CCCCC-CCCceEEEEEEEcccccCCC-CceeEEecCCcc
Confidence 56555 47899999999999985443 345699998763
No 60
>cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.73 E-value=2.6e-17 Score=156.51 Aligned_cols=114 Identities=24% Similarity=0.279 Sum_probs=95.8
Q ss_pred CcccccccCcCceeEEEEEEEEeecCCCCC-CCCCCCcEEEEEECC-----eEEEeeeecCCCCCeEeeEEEEEeccCCc
Q 001830 259 DLRASTYDLVEQMRYLFVRVVKARDLPSKD-VTGSLDPFVEVKVGN-----YKGITKYYEKKQNPEWNEVFAFSRERIQS 332 (1008)
Q Consensus 259 ~~~~~~~~~~~~~~~L~V~v~~a~~L~~~d-~~g~~dpyv~v~~~~-----~~~kT~~~~~t~nP~w~e~f~f~~~~~~~ 332 (1008)
..+++.|+ .+.|.|+|++|+||...+ ..|.+||||++++.+ .+.||+++++|+||+|||+|.|.+. +.+
T Consensus 20 l~lsl~y~----~~~L~V~Vi~ArnL~~~~~~~g~sDPYVKv~Llp~~~~~~k~KT~v~kktlnPvfNE~F~f~v~-l~~ 94 (146)
T cd04028 20 IQLGLYDK----KGQLEVEVIRARGLVQKPGSKVLPAPYVKVYLLEGKKCIAKKKTKIARKTLDPLYQQQLVFDVS-PTG 94 (146)
T ss_pred EEEEEEeC----CCEEEEEEEEeeCCCcccCCCCCcCCeEEEEEECCCccccceeceecCCCCCCccCCeEEEEEc-CCC
Confidence 35677774 478999999999998864 568899999999964 2679999999999999999999998 667
Q ss_pred CeEEEEEE-ecC-CCCCeeeEEEEEEccccCCCCCCCCCCccEEEEeecCCC
Q 001830 333 SVLEVAVK-DKD-VVKDDYVGLVRFDLNEVPTRVPPDSPLAAEWYRLEDRKG 382 (1008)
Q Consensus 333 ~~l~i~V~-d~d-~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~ 382 (1008)
..|.|+|| |++ ..++++||++.|+|.++..+ .....||.|.+...
T Consensus 95 ~~L~v~V~~d~~~~~~~~~iG~~~i~L~~l~~~-----~~~~~Wy~L~~~~~ 141 (146)
T cd04028 95 KTLQVIVWGDYGRMDKKVFMGVAQILLDDLDLS-----NLVIGWYKLFPTSS 141 (146)
T ss_pred CEEEEEEEeCCCCCCCCceEEEEEEEcccccCC-----CCceeEEecCCccc
Confidence 89999999 566 56899999999999999754 34579999987543
No 61
>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2
Probab=99.73 E-value=1.4e-17 Score=156.32 Aligned_cols=106 Identities=27% Similarity=0.347 Sum_probs=89.9
Q ss_pred CceEEEEEEEeeCCCCCCC-CCCCCcEEEEEEC-----CeeeccccCCCCCCCeeeeEEEEEecCCCCCCCceEEEEEEe
Q 001830 3 HLKLGVEVVSAYELMPKDG-QGSSNAFVELHFD-----GQKFRTTTKEKDLTPVWNESFYFNISDPHNLSNLALDAYVYN 76 (1008)
Q Consensus 3 ~~~L~V~v~~a~~L~~~d~-~g~~dPyv~v~~~-----~~~~~T~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~~~V~d 76 (1008)
.+.|.|+|++|+||+++|. .|.+||||+|++. ..+++|+++++++||+|||+|.|.+.. +.+....|.|.|||
T Consensus 14 ~~~L~V~Vi~a~~L~~~~~~~~~~DpyVkv~l~p~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~-~~l~~~~L~~~V~d 92 (125)
T cd04029 14 TQSLNVHVKECRNLAYGDEAKKRSNPYVKTYLLPDKSRQSKRKTSIKRNTTNPVYNETLKYSISH-SQLETRTLQLSVWH 92 (125)
T ss_pred CCeEEEEEEEecCCCccCCCCCCCCcEEEEEEEcCCccccceEeeeeeCCCCCcccceEEEECCH-HHhCCCEEEEEEEE
Confidence 4789999999999999876 5899999999985 235899999999999999999999854 33556689999999
Q ss_pred CCCCCCCCCeeEEEEEeCcccCCCCCceeEEEecc
Q 001830 77 HNRTTNSKSFLGKVRLTGTSFVPYSDAVVLHYPLE 111 (1008)
Q Consensus 77 ~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~L~ 111 (1008)
++.++ ++++||++.|+|.++..... ...||+|.
T Consensus 93 ~~~~~-~~~~lG~~~i~l~~~~~~~~-~~~w~~l~ 125 (125)
T cd04029 93 YDRFG-RNTFLGEVEIPLDSWNFDSQ-HEECLPLH 125 (125)
T ss_pred CCCCC-CCcEEEEEEEeCCcccccCC-cccEEECc
Confidence 98775 78999999999999877754 44599984
No 62
>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei
Probab=99.73 E-value=6.4e-17 Score=150.78 Aligned_cols=112 Identities=34% Similarity=0.532 Sum_probs=100.3
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECCeEEEeeeecCCCCCeEeeEEEEEeccCCcCeEEEEEEecC-CCCCeeeEE
Q 001830 274 LFVRVVKARDLPSKDVTGSLDPFVEVKVGNYKGITKYYEKKQNPEWNEVFAFSRERIQSSVLEVAVKDKD-VVKDDYVGL 352 (1008)
Q Consensus 274 L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~~~~~t~nP~w~e~f~f~~~~~~~~~l~i~V~d~d-~~~d~~lG~ 352 (1008)
|+|+|++|++|+..+..+.+||||++++++++++|+++++|.||.|||+|.|.+.+.....|.|+|||++ .+++++||+
T Consensus 2 ~~V~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~v~v~d~~~~~~~~~iG~ 81 (116)
T cd08376 2 VTIVLVEGKNLPPMDDNGLSDPYVKFRLGNEKYKSKVCSKTLNPQWLEQFDLHLFDDQSQILEIEVWDKDTGKKDEFIGR 81 (116)
T ss_pred EEEEEEEEECCCCCCCCCCCCcEEEEEECCEeEecccccCCCCCceeEEEEEEecCCCCCEEEEEEEECCCCCCCCeEEE
Confidence 7899999999999998899999999999999999999999999999999999987766689999999999 678999999
Q ss_pred EEEEccccCCCCCCCCCCccEEEEeecCCCCccceEEEEEEEE
Q 001830 353 VRFDLNEVPTRVPPDSPLAAEWYRLEDRKGEKKKGELMLAVWY 395 (1008)
Q Consensus 353 ~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~G~i~l~~~~ 395 (1008)
+.++|.++..+ .....|++|.+. .|+|++.+.|
T Consensus 82 ~~~~l~~l~~~-----~~~~~w~~L~~~-----~G~~~~~~~~ 114 (116)
T cd08376 82 CEIDLSALPRE-----QTHSLELELEDG-----EGSLLLLLTL 114 (116)
T ss_pred EEEeHHHCCCC-----CceEEEEEccCC-----CcEEEEEEEe
Confidence 99999998865 456799999864 3888888765
No 63
>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2). A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o
Probab=99.73 E-value=4.2e-17 Score=152.55 Aligned_cols=114 Identities=26% Similarity=0.420 Sum_probs=96.8
Q ss_pred eEEEEEEEeeCCCCCCCCCCCCcEEEEEEC---CeeeccccCCCCCCCeeeeEEEEEecCCCCCCCceEEEEEEeCCCCC
Q 001830 5 KLGVEVVSAYELMPKDGQGSSNAFVELHFD---GQKFRTTTKEKDLTPVWNESFYFNISDPHNLSNLALDAYVYNHNRTT 81 (1008)
Q Consensus 5 ~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~---~~~~~T~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~~~V~d~~~~~ 81 (1008)
.|.|+|++|++|++.|..|.+||||++++. +++++|+++++|.||+|||+|.|.+... ....|.|+|||+|.+
T Consensus 1 ~L~V~vi~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~vv~~t~nP~Wne~f~f~i~~~---~~~~l~v~v~d~d~~- 76 (119)
T cd04036 1 LLTVRVLRATNITKGDLLSTPDCYVELWLPTASDEKKRTKTIKNSINPVWNETFEFRIQSQ---VKNVLELTVMDEDYV- 76 (119)
T ss_pred CeEEEEEEeeCCCccCCCCCCCcEEEEEEcCCCCccCccceecCCCCCccceEEEEEeCcc---cCCEEEEEEEECCCC-
Confidence 378999999999999988999999999986 3568999999999999999999998542 235799999999876
Q ss_pred CCCCeeEEEEEeCcccCCCCCceeEEEecccCCCCcccceEEEEEEEe
Q 001830 82 NSKSFLGKVRLTGTSFVPYSDAVVLHYPLEKRSIFSRVKGELGLKVFV 129 (1008)
Q Consensus 82 ~~d~~lG~~~i~l~~l~~~~~~~~~~~~L~~~~~~~~~~G~i~~~~~~ 129 (1008)
+|++||++.+++.++.. +.....||+|.+. .+|+|.+.+.+
T Consensus 77 -~~~~iG~~~~~l~~l~~-g~~~~~~~~L~~~-----~~g~l~~~~~~ 117 (119)
T cd04036 77 -MDDHLGTVLFDVSKLKL-GEKVRVTFSLNPQ-----GKEELEVEFLL 117 (119)
T ss_pred -CCcccEEEEEEHHHCCC-CCcEEEEEECCCC-----CCceEEEEEEe
Confidence 78999999999998764 3456679999864 36899988865
No 64
>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon. A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=99.73 E-value=5.4e-17 Score=154.82 Aligned_cols=118 Identities=24% Similarity=0.389 Sum_probs=101.4
Q ss_pred CCCceEEEEEEEeeCCCCCCCC----------CCCCcEEEEEECCee-eccccCCCCCCCeeeeEEEEEecCCCCCCCce
Q 001830 1 MSHLKLGVEVVSAYELMPKDGQ----------GSSNAFVELHFDGQK-FRTTTKEKDLTPVWNESFYFNISDPHNLSNLA 69 (1008)
Q Consensus 1 m~~~~L~V~v~~a~~L~~~d~~----------g~~dPyv~v~~~~~~-~~T~~~~~t~nP~Wne~f~f~v~~~~~~~~~~ 69 (1008)
|.++.|+|+|++|++|.+.|.. |.+||||++.+++++ .+|+++++|+||.|||+|.|.+.+ ...
T Consensus 1 ~~~g~l~V~v~~a~~L~~~d~~~~~~~~~~~~g~~dpyv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~~-----~~~ 75 (132)
T cd04014 1 MFTGTLKIKICEAVDLKPTDWSTRHAVPKKGSQLLDPYVSIDVDDTHIGKTSTKPKTNSPVWNEEFTTEVHN-----GRN 75 (132)
T ss_pred CcceEEEEEEEEecCCCCCCchhhhcccccCccCcCcEEEEEECCEEEeEEeEcCCCCCCCcceeEEEEcCC-----CCE
Confidence 7889999999999999988863 689999999999876 799999999999999999999852 248
Q ss_pred EEEEEEeCCCCCCCCCeeEEEEEeCcccCCC-CCceeEEEecccCCCCcccceEEEEEEEeec
Q 001830 70 LDAYVYNHNRTTNSKSFLGKVRLTGTSFVPY-SDAVVLHYPLEKRSIFSRVKGELGLKVFVTD 131 (1008)
Q Consensus 70 l~~~V~d~~~~~~~d~~lG~~~i~l~~l~~~-~~~~~~~~~L~~~~~~~~~~G~i~~~~~~~~ 131 (1008)
|.|.|||++... .|++||++.++|.++... +.....|++|++ .|.|++++.+..
T Consensus 76 l~~~v~d~~~~~-~~~~iG~~~i~l~~l~~~~~~~~~~w~~L~~-------~G~l~l~~~~~~ 130 (132)
T cd04014 76 LELTVFHDAAIG-PDDFVANCTISFEDLIQRGSGSFDLWVDLEP-------QGKLHVKIELKG 130 (132)
T ss_pred EEEEEEeCCCCC-CCceEEEEEEEhHHhcccCCCcccEEEEccC-------CcEEEEEEEEec
Confidence 999999997764 789999999999998764 455677999974 499999998754
No 65
>cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.73 E-value=3.3e-17 Score=149.30 Aligned_cols=100 Identities=21% Similarity=0.239 Sum_probs=84.2
Q ss_pred ceEEEEEEEeeCCCCCCCCCCCCcEEEEEECCeeeccccCCCCCCCeeeeEEEEEecCCCCCCCceEEEEEEeCCCCCCC
Q 001830 4 LKLGVEVVSAYELMPKDGQGSSNAFVELHFDGQKFRTTTKEKDLTPVWNESFYFNISDPHNLSNLALDAYVYNHNRTTNS 83 (1008)
Q Consensus 4 ~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~~~V~d~~~~~~~ 83 (1008)
+.|.|+|++|++|+.++ ..||||+|++++++.+|++.++ .||.|||+|.|.+.+.. ..|.|+|||+|.+ .
T Consensus 2 ~~L~V~Vv~Ar~L~~~~---~~dPYV~Ik~g~~k~kT~v~~~-~nP~WnE~F~F~~~~~~----~~L~v~V~dkd~~--~ 71 (127)
T cd08394 2 SLLCVLVKKAKLDGAPD---KFNTYVTLKVQNVKSTTIAVRG-SQPCWEQDFMFEINRLD----LGLVIELWNKGLI--W 71 (127)
T ss_pred ceEEEEEEEeeCCCCCC---CCCCeEEEEECCEEeEeeECCC-CCCceeeEEEEEEcCCC----CEEEEEEEeCCCc--C
Confidence 37999999999997655 5699999999999999999887 59999999999985422 2599999999754 7
Q ss_pred CCeeEEEEEeCcccCCC-CCceeEEEecccC
Q 001830 84 KSFLGKVRLTGTSFVPY-SDAVVLHYPLEKR 113 (1008)
Q Consensus 84 d~~lG~~~i~l~~l~~~-~~~~~~~~~L~~~ 113 (1008)
|+|||++.|+|.++... ......||+|+..
T Consensus 72 DD~lG~v~i~L~~v~~~~~~~~~~Wy~L~~~ 102 (127)
T cd08394 72 DTLVGTVWIPLSTIRQSNEEGPGEWLTLDSE 102 (127)
T ss_pred CCceEEEEEEhHHcccCCCCCCCccEecChH
Confidence 99999999999998654 3345789999865
No 66
>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2
Probab=99.72 E-value=6.2e-17 Score=151.94 Aligned_cols=104 Identities=15% Similarity=0.260 Sum_probs=90.4
Q ss_pred ceeEEEEEEEeecCCCCCccCCCCCCCCeEEEEEECC-----EEEEeeeecCCCCcccccEEEEEeeCC---CceEEEEE
Q 001830 598 SIGVLELGILNADGLHPMKTRDGRGTADTYCVAKYGH-----KWVRTRTIINSLSAKYNEQYTWEVYDP---ATVLTVGV 669 (1008)
Q Consensus 598 ~~g~L~v~v~~a~~L~~~~~~~~~g~~dpyv~~~~~~-----~~~~T~~~~~~~nP~wne~f~~~v~~~---~~~l~i~V 669 (1008)
..|.|.|.|++|+||++.+ ...|.+||||++.+.+ ...||++++++.||.|||+|.|.+... ...|.|+|
T Consensus 13 ~~~~L~V~Vi~a~~L~~~~--~~~~~~DpyVkv~l~p~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~l~~~~L~~~V 90 (125)
T cd04029 13 KTQSLNVHVKECRNLAYGD--EAKKRSNPYVKTYLLPDKSRQSKRKTSIKRNTTNPVYNETLKYSISHSQLETRTLQLSV 90 (125)
T ss_pred CCCeEEEEEEEecCCCccC--CCCCCCCcEEEEEEEcCCccccceEeeeeeCCCCCcccceEEEECCHHHhCCCEEEEEE
Confidence 4589999999999999764 2357899999998842 357999999999999999999998752 45799999
Q ss_pred EeCCCCCCCCCCCCceeEEEEEEcccccCCCeEEeeEee
Q 001830 670 FDNSHIGGSSGSKDVKIGKVRIRISTLETGRVYTHSYPL 708 (1008)
Q Consensus 670 ~d~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L 708 (1008)
||++.++ ++++||.+.|+|.++...+..+.||||
T Consensus 91 ~d~~~~~-----~~~~lG~~~i~l~~~~~~~~~~~w~~l 124 (125)
T cd04029 91 WHYDRFG-----RNTFLGEVEIPLDSWNFDSQHEECLPL 124 (125)
T ss_pred EECCCCC-----CCcEEEEEEEeCCcccccCCcccEEEC
Confidence 9999776 899999999999999888888999998
No 67
>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence
Probab=99.72 E-value=3.6e-17 Score=154.29 Aligned_cols=108 Identities=22% Similarity=0.330 Sum_probs=89.9
Q ss_pred CceEEEEEEEeeCCCCCCCC-CCCCcEEEEEEC---CeeeccccCCCCCCCeeeeEEEEEecCCCCCCCceEEEEEEeCC
Q 001830 3 HLKLGVEVVSAYELMPKDGQ-GSSNAFVELHFD---GQKFRTTTKEKDLTPVWNESFYFNISDPHNLSNLALDAYVYNHN 78 (1008)
Q Consensus 3 ~~~L~V~v~~a~~L~~~d~~-g~~dPyv~v~~~---~~~~~T~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~~~V~d~~ 78 (1008)
...|.|+|++|+||+.+|.. |.+||||+|.+. +++++|+++++|+||+|||+|.|...+..++....|.|.|||+|
T Consensus 15 ~~~L~V~Vi~a~~L~~~~~~~~~~DpyV~v~l~~~~~~~~kT~v~~~t~nP~wnE~F~f~~~~~~~~~~~~L~~~V~d~d 94 (128)
T cd08388 15 KKALLVNIIECRDLPAMDEQSGTSDPYVKLQLLPEKEHKVKTRVLRKTRNPVYDETFTFYGIPYNQLQDLSLHFAVLSFD 94 (128)
T ss_pred CCEEEEEEEEeECCCCCCCCCCCcCCEEEEEEeCCcCceeeccEEcCCCCCceeeEEEEcccCHHHhCCCEEEEEEEEcC
Confidence 46899999999999999986 899999999985 44679999999999999999999532234445568999999998
Q ss_pred CCCCCCCeeEEEEEeCcccCCC-CCceeEEEecc
Q 001830 79 RTTNSKSFLGKVRLTGTSFVPY-SDAVVLHYPLE 111 (1008)
Q Consensus 79 ~~~~~d~~lG~~~i~l~~l~~~-~~~~~~~~~L~ 111 (1008)
.++ +|++||++.|+|.++... .+....|.+|+
T Consensus 95 ~~~-~d~~lG~~~i~L~~l~~~~~~~~~~~~~~~ 127 (128)
T cd08388 95 RYS-RDDVIGEVVCPLAGADLLNEGELLVSREIQ 127 (128)
T ss_pred CCC-CCceeEEEEEeccccCCCCCceEEEEEecc
Confidence 875 789999999999998665 34466788875
No 68
>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family. This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho
Probab=99.72 E-value=2.2e-17 Score=153.24 Aligned_cols=104 Identities=22% Similarity=0.387 Sum_probs=87.1
Q ss_pred CceEEEEEEEeeCCCCCCCCCCCCcEEEEEECC-----eeeccccCCCCCCCeeeeEEEEEecCCCCCCCceEEEEEEeC
Q 001830 3 HLKLGVEVVSAYELMPKDGQGSSNAFVELHFDG-----QKFRTTTKEKDLTPVWNESFYFNISDPHNLSNLALDAYVYNH 77 (1008)
Q Consensus 3 ~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~-----~~~~T~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~~~V~d~ 77 (1008)
.+.|.|+|++|+||+++| .|.+||||++++.. .+++|+++++|+||+|||+|.|.+.. +.. ...|.|.|||+
T Consensus 11 ~~~L~V~Vi~ar~L~~~~-~g~~dpYVkv~l~p~~~~~~~~kT~v~~~t~~P~~nE~F~f~v~~-~~~-~~~l~v~V~~~ 87 (119)
T cd08685 11 NRKLTLHVLEAKGLRSTN-SGTCNSYVKISLSPDKEVRFRQKTSTVPDSANPLFHETFSFDVNE-RDY-QKRLLVTVWNK 87 (119)
T ss_pred CCEEEEEEEEEECCCCCC-CCCCCeeEEEEEEeCCCCcceEeCccccCCCCCccccEEEEEcCh-HHh-CCEEEEEEECC
Confidence 478999999999999998 88999999999963 35789999999999999999999854 222 24689999999
Q ss_pred CCCCCCCCeeEEEEEeCcccCCCCCceeEEEec
Q 001830 78 NRTTNSKSFLGKVRLTGTSFVPYSDAVVLHYPL 110 (1008)
Q Consensus 78 ~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~L 110 (1008)
+....+++|||++.|++.++.. ++....||+|
T Consensus 88 ~~~~~~~~~lG~~~i~l~~~~~-~~~~~~Wy~l 119 (119)
T cd08685 88 LSKSRDSGLLGCMSFGVKSIVN-QKEISGWYYL 119 (119)
T ss_pred CCCcCCCEEEEEEEecHHHhcc-CccccceEeC
Confidence 8775457899999999999973 4445679876
No 69
>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.72 E-value=3.6e-17 Score=154.85 Aligned_cols=106 Identities=28% Similarity=0.429 Sum_probs=89.3
Q ss_pred CceEEEEEEEeeCCCCCCCCCCCCcEEEEEECC-----eeeccccCCCCCCCeeeeEEEEEecCCCCCCCceEEEEEEeC
Q 001830 3 HLKLGVEVVSAYELMPKDGQGSSNAFVELHFDG-----QKFRTTTKEKDLTPVWNESFYFNISDPHNLSNLALDAYVYNH 77 (1008)
Q Consensus 3 ~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~-----~~~~T~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~~~V~d~ 77 (1008)
.+.|.|+|++|+||+..|..+.+||||+|++.+ .+++|+++++|+||+|||+|.|.+...+++....|.|+|||+
T Consensus 15 ~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~l~~~~l~~~V~d~ 94 (125)
T cd04031 15 TSQLIVTVLQARDLPPRDDGSLRNPYVKVYLLPDRSEKSKRRTKTVKKTLNPEWNQTFEYSNVRRETLKERTLEVTVWDY 94 (125)
T ss_pred CCEEEEEEEEecCCCCcCCCCCCCCEEEEEEccCCCccccccccccCCCCCCccccEEEEcccCHHHhCCCEEEEEEEeC
Confidence 478999999999999999989999999999964 468999999999999999999996543444456899999999
Q ss_pred CCCCCCCCeeEEEEEeCcccCCCCCceeEEEecc
Q 001830 78 NRTTNSKSFLGKVRLTGTSFVPYSDAVVLHYPLE 111 (1008)
Q Consensus 78 ~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~L~ 111 (1008)
+.+. +|++||++.++|.+.... ....||+|+
T Consensus 95 ~~~~-~~~~iG~~~i~l~~~~~~--~~~~W~~L~ 125 (125)
T cd04031 95 DRDG-ENDFLGEVVIDLADALLD--DEPHWYPLQ 125 (125)
T ss_pred CCCC-CCcEeeEEEEeccccccc--CCcceEECc
Confidence 8765 789999999999984332 234699985
No 70
>cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.71 E-value=7.1e-17 Score=148.53 Aligned_cols=102 Identities=33% Similarity=0.435 Sum_probs=86.7
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECC-------eEEEeeeecCCCCCeEeeEEEEEec---cCCcCeEEEEEEecC
Q 001830 274 LFVRVVKARDLPSKDVTGSLDPFVEVKVGN-------YKGITKYYEKKQNPEWNEVFAFSRE---RIQSSVLEVAVKDKD 343 (1008)
Q Consensus 274 L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~-------~~~kT~~~~~t~nP~w~e~f~f~~~---~~~~~~l~i~V~d~d 343 (1008)
|+|+|++|++|+..+ .|.+||||+|++.+ ++++|+++.+|+||+|||+|.|.+. .+....|.|.|||+|
T Consensus 2 L~V~Vi~A~~L~~~d-~g~~DPYVkV~l~g~~~~~k~~k~kTkv~~~tlnPvwNE~f~F~v~~~~~~~~~~L~~~V~D~d 80 (120)
T cd08395 2 VTVKVVAANDLKWQT-TGMFRPFVEVNLIGPHLSDKKRKFATKSKNNNWSPKYNETFQFILGNEDDPESYELHICVKDYC 80 (120)
T ss_pred EEEEEEECcCCCccc-CCCCCCEEEEEEecCCCcccccEeeeEEecCCCCCccCcEEEEEeeCcCCCceeEEEEEEEEec
Confidence 889999999999887 48999999999832 3568999999999999999999985 344567999999999
Q ss_pred -CCCCeeeEEEEEEccccCCCCCCCCCCccEEEEeecCC
Q 001830 344 -VVKDDYVGLVRFDLNEVPTRVPPDSPLAAEWYRLEDRK 381 (1008)
Q Consensus 344 -~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~ 381 (1008)
.+++++||++.+++.++..+ .....|++|....
T Consensus 81 ~~~~dd~IG~~~l~l~~~~~~-----~~~~~w~~L~~~~ 114 (120)
T cd08395 81 FARDDRLVGVTVLQLRDIAQA-----GSCACWLPLGRRI 114 (120)
T ss_pred ccCCCCEEEEEEEEHHHCcCC-----CcEEEEEECcCcc
Confidence 55799999999999999975 3467899997653
No 71
>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety
Probab=99.71 E-value=5.5e-17 Score=152.59 Aligned_cols=112 Identities=29% Similarity=0.452 Sum_probs=94.6
Q ss_pred cccccccCcCceeEEEEEEEEeecCCCCCCC-CCCCcEEEEEECC-----eEEEeeeecCCCCCeEeeEEEEEec--cCC
Q 001830 260 LRASTYDLVEQMRYLFVRVVKARDLPSKDVT-GSLDPFVEVKVGN-----YKGITKYYEKKQNPEWNEVFAFSRE--RIQ 331 (1008)
Q Consensus 260 ~~~~~~~~~~~~~~L~V~v~~a~~L~~~d~~-g~~dpyv~v~~~~-----~~~kT~~~~~t~nP~w~e~f~f~~~--~~~ 331 (1008)
.+++.|+. ..+.|.|+|++|+||+.+|.. |.+||||++++.+ .++||++++++.||+|||+|.|.+. ++.
T Consensus 5 ~~sl~y~~--~~~~L~V~vi~a~~L~~~d~~~g~~dpyVkv~l~p~~~~~~~~kT~v~~~t~nP~~nE~f~f~v~~~~l~ 82 (125)
T cd08393 5 QFALDYDP--KLRELHVHVIQCQDLAAADPKKQRSDPYVKTYLLPDKSNRGKRKTSVKKKTLNPVFNETLRYKVEREELP 82 (125)
T ss_pred EEEEEEEC--CCCEEEEEEEEeCCCCCcCCCCCCCCcEEEEEEEcCCCccccccCccCcCCCCCccCceEEEECCHHHhC
Confidence 45666764 346899999999999999875 8999999999963 3579999999999999999999985 455
Q ss_pred cCeEEEEEEecC-CCCCeeeEEEEEEccccCCCCCCCCCCccEEEEee
Q 001830 332 SSVLEVAVKDKD-VVKDDYVGLVRFDLNEVPTRVPPDSPLAAEWYRLE 378 (1008)
Q Consensus 332 ~~~l~i~V~d~d-~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~ 378 (1008)
...|.|+|||++ .+++++||++.++|.++... .....||+|.
T Consensus 83 ~~~L~~~V~d~~~~~~~~~iG~~~i~L~~~~~~-----~~~~~W~~L~ 125 (125)
T cd08393 83 TRVLNLSVWHRDSLGRNSFLGEVEVDLGSWDWS-----NTQPTWYPLQ 125 (125)
T ss_pred CCEEEEEEEeCCCCCCCcEeEEEEEecCccccC-----CCCcceEECc
Confidence 678999999998 67899999999999999764 3457899873
No 72
>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone. The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a
Probab=99.71 E-value=4e-17 Score=150.05 Aligned_cols=105 Identities=29% Similarity=0.497 Sum_probs=90.1
Q ss_pred EEEEEEEeeCCCCCCC-CCCCCcEEEEEECCeeeccccCCCCCCCee-eeEEEEEecCCCCCCCceEEEEEEeCCCCCCC
Q 001830 6 LGVEVVSAYELMPKDG-QGSSNAFVELHFDGQKFRTTTKEKDLTPVW-NESFYFNISDPHNLSNLALDAYVYNHNRTTNS 83 (1008)
Q Consensus 6 L~V~v~~a~~L~~~d~-~g~~dPyv~v~~~~~~~~T~~~~~t~nP~W-ne~f~f~v~~~~~~~~~~l~~~V~d~~~~~~~ 83 (1008)
|.|+|++|+||+.+|. .|.+||||++++++++++|+++++++||+| ||+|.|.+... .+....|.|+|||++.++ +
T Consensus 1 l~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~kT~v~~~~~nP~W~ne~f~f~i~~~-~l~~~~l~i~V~d~d~~~-~ 78 (110)
T cd08688 1 LKVRVVAARDLPVMDRSSDLTDAFVEVKFGSTTYKTDVVKKSLNPVWNSEWFRFEVDDE-ELQDEPLQIRVMDHDTYS-A 78 (110)
T ss_pred CEEEEEEEECCCccccCCCCCCceEEEEECCeeEecceecCCCCCcccCcEEEEEcChH-HcCCCeEEEEEEeCCCCC-C
Confidence 6899999999999885 789999999999999999999999999999 99999998642 234568999999998765 7
Q ss_pred CCeeEEEEEeCcccCCC--CCceeEEEeccc
Q 001830 84 KSFLGKVRLTGTSFVPY--SDAVVLHYPLEK 112 (1008)
Q Consensus 84 d~~lG~~~i~l~~l~~~--~~~~~~~~~L~~ 112 (1008)
|++||++.+++.++... +.....||+|.+
T Consensus 79 ~~~iG~~~~~l~~l~~~~~~~~~~~w~~l~~ 109 (110)
T cd08688 79 NDAIGKVYIDLNPLLLKDSVSQISGWFPIYD 109 (110)
T ss_pred CCceEEEEEeHHHhcccCCccccCCeEEccc
Confidence 89999999999998764 334567999864
No 73
>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular
Probab=99.71 E-value=1.1e-16 Score=150.60 Aligned_cols=115 Identities=24% Similarity=0.422 Sum_probs=97.9
Q ss_pred ceEEEEEEEeeCCCCCCC------CCCCCcEEEEEECCeeeccccCCCCCCCeeeeEEEEEecCCCCCCCceEEEEEEeC
Q 001830 4 LKLGVEVVSAYELMPKDG------QGSSNAFVELHFDGQKFRTTTKEKDLTPVWNESFYFNISDPHNLSNLALDAYVYNH 77 (1008)
Q Consensus 4 ~~L~V~v~~a~~L~~~d~------~g~~dPyv~v~~~~~~~~T~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~~~V~d~ 77 (1008)
+.|.|+|++|+||+.+|. .|.+||||+|+++++.++|+++++|+||+|||+|.|.+... ....|.|+|||+
T Consensus 1 g~l~v~v~~a~~L~~~d~~~~~~~~g~~dPyv~v~~~~~~~kT~~~~~t~~P~W~e~f~~~v~~~---~~~~l~i~v~d~ 77 (121)
T cd08391 1 GVLRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGAQTFKSKVIKENLNPKWNEVYEAVVDEV---PGQELEIELFDE 77 (121)
T ss_pred CeEEEEEEEccCCcccccccccCCCCCcCCEEEEEECCEeEEccccCCCCCCcccceEEEEeCCC---CCCEEEEEEEec
Confidence 468999999999998875 36899999999999999999999999999999999998532 345899999999
Q ss_pred CCCCCCCCeeEEEEEeCcccCCCCCceeEEEecccCCCCcccceEEEEEEEe
Q 001830 78 NRTTNSKSFLGKVRLTGTSFVPYSDAVVLHYPLEKRSIFSRVKGELGLKVFV 129 (1008)
Q Consensus 78 ~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~L~~~~~~~~~~G~i~~~~~~ 129 (1008)
+.. +|++||++.+++.++...+ ....||+|... .+|+|++.+.|
T Consensus 78 ~~~--~~~~iG~~~i~l~~l~~~~-~~~~w~~L~~~-----~~G~~~~~~~~ 121 (121)
T cd08391 78 DPD--KDDFLGRLSIDLGSVEKKG-FIDEWLPLEDV-----KSGRLHLKLEW 121 (121)
T ss_pred CCC--CCCcEEEEEEEHHHhcccC-ccceEEECcCC-----CCceEEEEEeC
Confidence 776 7899999999999987543 45679999763 45999988753
No 74
>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42). Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.71 E-value=1.3e-16 Score=152.67 Aligned_cols=118 Identities=25% Similarity=0.368 Sum_probs=99.9
Q ss_pred EEEEEEeecCCCCCccCCCCCCCCeEEEEEECCE-------EEEeeeecCCCCcccccEEEEEeeCCCceEEEEEEeCCC
Q 001830 602 LELGILNADGLHPMKTRDGRGTADTYCVAKYGHK-------WVRTRTIINSLSAKYNEQYTWEVYDPATVLTVGVFDNSH 674 (1008)
Q Consensus 602 L~v~v~~a~~L~~~~~~~~~g~~dpyv~~~~~~~-------~~~T~~~~~~~nP~wne~f~~~v~~~~~~l~i~V~d~~~ 674 (1008)
|+|+|++|+||+.. +..|.+||||++.+++. .++|++++++.||.|||.|.|.+......|.|+|||++.
T Consensus 2 L~v~Vi~a~~L~~~---d~~~~~Dpyv~v~~~~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~l~~~v~d~~~ 78 (133)
T cd04033 2 LRVKVLAGIDLAKK---DIFGASDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEFFFRVNPREHRLLFEVFDENR 78 (133)
T ss_pred EEEEEEEeECCCcc---cCCCCcCcEEEEEEECCCCCCcccceeeeEEcCCCCCcEeeEEEEEEcCCCCEEEEEEEECCC
Confidence 78999999999965 45788999999999654 579999999999999999999997767789999999998
Q ss_pred CCCCCCCCCceeEEEEEEcccccCCC------eEEeeEeeeecCCCCCccccEEEEEEEE
Q 001830 675 IGGSSGSKDVKIGKVRIRISTLETGR------VYTHSYPLLVLHPSGVKKMGELHLAIRF 728 (1008)
Q Consensus 675 ~~~~~~~~d~~lG~~~i~l~~l~~~~------~~~~~~~L~~~~~~~~~~~G~i~l~~~f 728 (1008)
++ ++++||++.++++++..+. ....||+|......+ +..|+|++++.|
T Consensus 79 ~~-----~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~-~~~G~l~~~~~~ 132 (133)
T cd04033 79 LT-----RDDFLGQVEVPLNNLPTETPGNERRYTFKDYLLRPRSSKS-RVKGHLRLYMAY 132 (133)
T ss_pred CC-----CCCeeEEEEEEHHHCCCcCccccccccchheeeeecCCCC-cceeEEEEEEee
Confidence 76 8999999999999986553 245899998654444 346999999886
No 75
>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu
Probab=99.71 E-value=1.4e-16 Score=151.58 Aligned_cols=122 Identities=22% Similarity=0.391 Sum_probs=101.8
Q ss_pred eEEEEEEEeecCCCCCccCCCCCCCCeEEEEEECCEEEEeeeecCCCCcccccEEEEEeeC-CCceEEEEEEeCCCCCCC
Q 001830 600 GVLELGILNADGLHPMKTRDGRGTADTYCVAKYGHKWVRTRTIINSLSAKYNEQYTWEVYD-PATVLTVGVFDNSHIGGS 678 (1008)
Q Consensus 600 g~L~v~v~~a~~L~~~~~~~~~g~~dpyv~~~~~~~~~~T~~~~~~~nP~wne~f~~~v~~-~~~~l~i~V~d~~~~~~~ 678 (1008)
|.|+|.|++|+||++.+. +..+.+||||++.+++..++|++++++.||.|||.|.|.+.+ ....|.|+|||++..+
T Consensus 1 g~l~v~v~~a~~L~~~~~-~~~~~~dPyv~v~~~~~~~kT~~~~~t~~P~Wne~f~~~~~~~~~~~l~i~v~d~~~~~-- 77 (128)
T cd04024 1 GVLRVHVVEAKDLAAKDR-SGKGKSDPYAILSVGAQRFKTQTIPNTLNPKWNYWCEFPIFSAQNQLLKLILWDKDRFA-- 77 (128)
T ss_pred CEEEEEEEEeeCCCcccC-CCCCCcCCeEEEEECCEEEecceecCCcCCccCCcEEEEecCCCCCEEEEEEEECCCCC--
Confidence 789999999999996531 126889999999999999999999999999999999999987 4678999999999766
Q ss_pred CCCCCceeEEEEEEccccc---CCCeEEeeEeeeecCCC-CCccccEEEEEEE
Q 001830 679 SGSKDVKIGKVRIRISTLE---TGRVYTHSYPLLVLHPS-GVKKMGELHLAIR 727 (1008)
Q Consensus 679 ~~~~d~~lG~~~i~l~~l~---~~~~~~~~~~L~~~~~~-~~~~~G~i~l~~~ 727 (1008)
++++||++.|++.++. .......||+|...... .....|+|+|++.
T Consensus 78 ---~~~~lG~~~i~l~~~~~~~~~~~~~~w~~L~~~~~~~~~~~~G~i~l~~~ 127 (128)
T cd04024 78 ---GKDYLGEFDIALEEVFADGKTGQSDKWITLKSTRPGKTSVVSGEIHLQFS 127 (128)
T ss_pred ---CCCcceEEEEEHHHhhcccccCccceeEEccCcccCccccccceEEEEEE
Confidence 7899999999999986 33446799999865332 2234699999764
No 76
>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4. Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins.
Probab=99.71 E-value=1.8e-16 Score=148.29 Aligned_cols=117 Identities=26% Similarity=0.409 Sum_probs=99.8
Q ss_pred EEEEEEeecCCCCCccCCCCCCCCeEEEEEECCEE-EEeeeecCCCCcccccEEEEEeeCCCceEEEEEEeCCCCCCCCC
Q 001830 602 LELGILNADGLHPMKTRDGRGTADTYCVAKYGHKW-VRTRTIINSLSAKYNEQYTWEVYDPATVLTVGVFDNSHIGGSSG 680 (1008)
Q Consensus 602 L~v~v~~a~~L~~~~~~~~~g~~dpyv~~~~~~~~-~~T~~~~~~~nP~wne~f~~~v~~~~~~l~i~V~d~~~~~~~~~ 680 (1008)
|.|.|++|++|+++ +..|.+||||++.++++. .+|++++++.||.|||.|.|.+......|.|+|||++.++
T Consensus 2 l~v~vi~a~~L~~~---d~~g~~DPYv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~~~~~l~v~v~d~~~~~---- 74 (121)
T cd04054 2 LYIRIVEGKNLPAK---DITGSSDPYCIVKVDNEVIIRTATVWKTLNPFWGEEYTVHLPPGFHTVSFYVLDEDTLS---- 74 (121)
T ss_pred EEEEEEEeeCCcCC---CCCCCCCceEEEEECCEeeeeeeeEcCCCCCcccceEEEeeCCCCCEEEEEEEECCCCC----
Confidence 78999999999976 457889999999998764 6999999999999999999999877789999999999876
Q ss_pred CCCceeEEEEEEcccccCC-CeEEeeEeeeecCCCCCccccEEEEEEE
Q 001830 681 SKDVKIGKVRIRISTLETG-RVYTHSYPLLVLHPSGVKKMGELHLAIR 727 (1008)
Q Consensus 681 ~~d~~lG~~~i~l~~l~~~-~~~~~~~~L~~~~~~~~~~~G~i~l~~~ 727 (1008)
+|++||++.+++.++..+ ...+.|++|......+. ..|+|++.++
T Consensus 75 -~d~~iG~~~~~~~~~~~~~~~~~~W~~L~~~~~~~~-~~G~i~l~~~ 120 (121)
T cd04054 75 -RDDVIGKVSLTREVISAHPRGIDGWMNLTEVDPDEE-VQGEIHLELS 120 (121)
T ss_pred -CCCEEEEEEEcHHHhccCCCCCCcEEECeeeCCCCc-cccEEEEEEE
Confidence 899999999999888653 34679999986544433 4599998765
No 77
>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1). Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha
Probab=99.71 E-value=2e-16 Score=151.33 Aligned_cols=124 Identities=21% Similarity=0.279 Sum_probs=100.0
Q ss_pred eEEEEEEEeeC--CCCCCCCCCCCcEEEEEE----C-CeeeccccCCCCCCCeeeeEEEEEecCCC-----CCCCceEEE
Q 001830 5 KLGVEVVSAYE--LMPKDGQGSSNAFVELHF----D-GQKFRTTTKEKDLTPVWNESFYFNISDPH-----NLSNLALDA 72 (1008)
Q Consensus 5 ~L~V~v~~a~~--L~~~d~~g~~dPyv~v~~----~-~~~~~T~~~~~t~nP~Wne~f~f~v~~~~-----~~~~~~l~~ 72 (1008)
...++|..|++ |+..+..|.+||||++++ + .++++|+++++|+||+|||+|.|.+...+ .+....|.|
T Consensus 3 ~~el~i~~~~~~~l~~~~~~~~~DpYVk~~l~~p~~~~~k~KT~v~k~TlnPvfNE~f~f~I~~~~~~~~R~l~~~~L~~ 82 (155)
T cd08690 3 SIELTIVRCIGIPLPSGWNPKDLDTYVKFEFPYPNEEPQSGKTSTIKDTNSPEYNESFKLNINRKHRSFQRVFKRHGLKF 82 (155)
T ss_pred ceEEEEEEeeccccCCCcCCCCCCeEEEEEEecCCCCCceeecCcccCCCCCcccceEEEEeccccchhhhhccCCcEEE
Confidence 35677777777 677787889999999997 2 45799999999999999999999985432 244568999
Q ss_pred EEEeCCCCCCCCCeeEEEEEeCcccCCCCCceeEEEecccCCCCcccceEEEEEEEeec
Q 001830 73 YVYNHNRTTNSKSFLGKVRLTGTSFVPYSDAVVLHYPLEKRSIFSRVKGELGLKVFVTD 131 (1008)
Q Consensus 73 ~V~d~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~L~~~~~~~~~~G~i~~~~~~~~ 131 (1008)
+|||++.+.++|++||++.++|..+....... .|++|... ...+.|.|.+++.+..
T Consensus 83 ~V~d~~~f~~~D~~iG~~~i~L~~l~~~~~~~-~~~~L~~~--~k~~Gg~l~v~ir~r~ 138 (155)
T cd08690 83 EVYHKGGFLRSDKLLGTAQVKLEPLETKCEIH-ESVDLMDG--RKATGGKLEVKVRLRE 138 (155)
T ss_pred EEEeCCCcccCCCeeEEEEEEcccccccCcce-EEEEhhhC--CCCcCCEEEEEEEecC
Confidence 99999887668999999999999987766544 48998743 2267899999998755
No 78
>cd04041 C2A_fungal C2 domain first repeat; fungal group. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan
Probab=99.71 E-value=4.4e-17 Score=150.05 Aligned_cols=104 Identities=23% Similarity=0.355 Sum_probs=86.8
Q ss_pred ceEEEEEEEeeCCCCCCCC-CCCCcEEEEEECC---eeeccccCCCCCCCeeeeEEEEEecCCCCCCCceEEEEEEeCCC
Q 001830 4 LKLGVEVVSAYELMPKDGQ-GSSNAFVELHFDG---QKFRTTTKEKDLTPVWNESFYFNISDPHNLSNLALDAYVYNHNR 79 (1008)
Q Consensus 4 ~~L~V~v~~a~~L~~~d~~-g~~dPyv~v~~~~---~~~~T~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~~~V~d~~~ 79 (1008)
+.|.|+|++|+||++.|.. |.+||||+|++.+ ..++|+++++|+||+|||+|.|.+...+......|.|+|||+|.
T Consensus 1 G~L~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~d~ 80 (111)
T cd04041 1 GVLVVTIHRATDLPKADFGTGSSDPYVTASFAKFGKPLYSTRIIRKDLNPVWEETWFVLVTPDEVKAGERLSCRLWDSDR 80 (111)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCCccEEEEEccCCCccEeeeeECCCCCCccceeEEEEeCchhccCCCEEEEEEEeCCC
Confidence 5799999999999999988 9999999999853 35899999999999999999998764322234589999999988
Q ss_pred CCCCCCeeEEEEEeCcccCCCCCceeEEEeccc
Q 001830 80 TTNSKSFLGKVRLTGTSFVPYSDAVVLHYPLEK 112 (1008)
Q Consensus 80 ~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~L~~ 112 (1008)
++ +|++||++.+++.++...+. |++++.
T Consensus 81 ~~-~dd~lG~~~i~l~~l~~~~~----~~~~~~ 108 (111)
T cd04041 81 FT-ADDRLGRVEIDLKELIEDRN----WMGRRE 108 (111)
T ss_pred CC-CCCcceEEEEEHHHHhcCCC----CCcccc
Confidence 75 78999999999999874433 666643
No 79
>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and
Probab=99.70 E-value=9e-17 Score=151.68 Aligned_cols=106 Identities=28% Similarity=0.415 Sum_probs=90.6
Q ss_pred CceEEEEEEEeeCCCCCCCCCCCCcEEEEEECC---eeeccccCCCCCCCeeeeEEEEEecCCCCCCCceEEEEEEeCCC
Q 001830 3 HLKLGVEVVSAYELMPKDGQGSSNAFVELHFDG---QKFRTTTKEKDLTPVWNESFYFNISDPHNLSNLALDAYVYNHNR 79 (1008)
Q Consensus 3 ~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~---~~~~T~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~~~V~d~~~ 79 (1008)
++.|.|+|++|+||+++|..|.+||||+|++.. +.++|+++++++||+|||+|.|.+.. ..+....|.|+|||++.
T Consensus 15 ~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~-~~l~~~~l~~~V~d~d~ 93 (124)
T cd08385 15 SNQLTVGIIQAADLPAMDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFTFKVPY-SELGNKTLVFSVYDFDR 93 (124)
T ss_pred CCEEEEEEEEeeCCCCccCCCCCCCEEEEEEEcCCCCceecccCcCCCCCceeeeEEEeCCH-HHhCCCEEEEEEEeCCC
Confidence 468999999999999999999999999999853 45799999999999999999999853 23445689999999988
Q ss_pred CCCCCCeeEEEEEeCcccCCCCCceeEEEecc
Q 001830 80 TTNSKSFLGKVRLTGTSFVPYSDAVVLHYPLE 111 (1008)
Q Consensus 80 ~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~L~ 111 (1008)
++ +|++||++.+++.++.. +.....|++|+
T Consensus 94 ~~-~~~~lG~~~i~l~~~~~-~~~~~~W~~l~ 123 (124)
T cd08385 94 FS-KHDLIGEVRVPLLTVDL-GHVTEEWRDLE 123 (124)
T ss_pred CC-CCceeEEEEEecCcccC-CCCcceEEEcc
Confidence 75 78899999999999865 44556799986
No 80
>cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.70 E-value=1.5e-16 Score=145.04 Aligned_cols=102 Identities=27% Similarity=0.416 Sum_probs=88.8
Q ss_pred eeEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEEEeeeecCCCCCeEeeEEEEEeccCCcCeEEEEEEecCCCCCeee
Q 001830 271 MRYLFVRVVKARDLPSKDVTGSLDPFVEVKVGNYKGITKYYEKKQNPEWNEVFAFSRERIQSSVLEVAVKDKDVVKDDYV 350 (1008)
Q Consensus 271 ~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~~~~~t~nP~w~e~f~f~~~~~~~~~l~i~V~d~d~~~d~~l 350 (1008)
|+.|.|+|++|++|...+ ..||||++.+++++.+|+++++ .||.|||.|.|.+.+... .|.|+|||+|..+|++|
T Consensus 1 m~~L~V~Vv~Ar~L~~~~---~~dPYV~Ik~g~~k~kT~v~~~-~nP~WnE~F~F~~~~~~~-~L~v~V~dkd~~~DD~l 75 (127)
T cd08394 1 MSLLCVLVKKAKLDGAPD---KFNTYVTLKVQNVKSTTIAVRG-SQPCWEQDFMFEINRLDL-GLVIELWNKGLIWDTLV 75 (127)
T ss_pred CceEEEEEEEeeCCCCCC---CCCCeEEEEECCEEeEeeECCC-CCCceeeEEEEEEcCCCC-EEEEEEEeCCCcCCCce
Confidence 357999999999997544 4599999999999999999877 599999999999987654 49999999997799999
Q ss_pred EEEEEEccccCCCCCCCCCCccEEEEeecC
Q 001830 351 GLVRFDLNEVPTRVPPDSPLAAEWYRLEDR 380 (1008)
Q Consensus 351 G~~~i~l~~l~~~~~~~~~~~~~w~~L~~~ 380 (1008)
|++.|+|.++..+ +....++||+|...
T Consensus 76 G~v~i~L~~v~~~---~~~~~~~Wy~L~~~ 102 (127)
T cd08394 76 GTVWIPLSTIRQS---NEEGPGEWLTLDSE 102 (127)
T ss_pred EEEEEEhHHcccC---CCCCCCccEecChH
Confidence 9999999999876 34677899999854
No 81
>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.70 E-value=8.1e-17 Score=151.07 Aligned_cols=107 Identities=27% Similarity=0.376 Sum_probs=90.8
Q ss_pred CceEEEEEEEeeCCCCCCCCCCCCcEEEEEEC---CeeeccccCCCCCCCeeeeEEEEEecCCCCCCCceEEEEEEeCCC
Q 001830 3 HLKLGVEVVSAYELMPKDGQGSSNAFVELHFD---GQKFRTTTKEKDLTPVWNESFYFNISDPHNLSNLALDAYVYNHNR 79 (1008)
Q Consensus 3 ~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~---~~~~~T~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~~~V~d~~~ 79 (1008)
...|.|+|++|+||+++|.+|.+||||++.+. .++++|+++++ +||+|||+|.|...+.+.+....|.|.|||++.
T Consensus 15 ~~~L~V~Vi~a~nL~~~~~~~~~d~yVk~~llp~~~~~~kTkv~~~-~nP~fnE~F~f~~i~~~~l~~~~L~~~V~~~~~ 93 (124)
T cd08389 15 ARKLTVTVIRAQDIPTKDRGGASSWQVHLVLLPSKKQRAKTKVQRG-PNPVFNETFTFSRVEPEELNNMALRFRLYGVER 93 (124)
T ss_pred CCEEEEEEEEecCCCchhcCCCCCcEEEEEEccCCcceeecccccC-CCCcccCEEEECCCCHHHhccCEEEEEEEECCC
Confidence 47899999999999999999999999998773 35689999887 999999999998433456677899999999988
Q ss_pred CCCCCCeeEEEEEeCcccCCCCCceeEEEeccc
Q 001830 80 TTNSKSFLGKVRLTGTSFVPYSDAVVLHYPLEK 112 (1008)
Q Consensus 80 ~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~L~~ 112 (1008)
++ ++++||++.|+|.++... +....||+|++
T Consensus 94 ~~-~~~~lG~~~i~L~~l~~~-~~~~~w~~L~p 124 (124)
T cd08389 94 MR-KERLIGEKVVPLSQLNLE-GETTVWLTLEP 124 (124)
T ss_pred cc-cCceEEEEEEeccccCCC-CCceEEEeCCC
Confidence 75 789999999999999654 45567999963
No 82
>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4. RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a
Probab=99.70 E-value=2.6e-16 Score=148.26 Aligned_cols=115 Identities=37% Similarity=0.510 Sum_probs=99.3
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECCeEEEeeeecCCCCCeEeeEEEEEeccCCcCeEEEEEEecC-CCCCeeeEE
Q 001830 274 LFVRVVKARDLPSKDVTGSLDPFVEVKVGNYKGITKYYEKKQNPEWNEVFAFSRERIQSSVLEVAVKDKD-VVKDDYVGL 352 (1008)
Q Consensus 274 L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~~~~~t~nP~w~e~f~f~~~~~~~~~l~i~V~d~d-~~~d~~lG~ 352 (1008)
|+|+|++|++|...+..+.+||||++++++..++|++++++.||.|||+|.|.+.......|.|+|||++ .+++++||.
T Consensus 2 L~v~vi~a~~L~~~d~~~~~DPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~~~v~d~~~~~~~~~iG~ 81 (123)
T cd04025 2 LRCHVLEARDLAPKDRNGTSDPFVRVFYNGQTLETSVVKKSCYPRWNEVFEFELMEGADSPLSVEVWDWDLVSKNDFLGK 81 (123)
T ss_pred EEEEEEEeeCCCCCCCCCCcCceEEEEECCEEEeceeecCCCCCccCcEEEEEcCCCCCCEEEEEEEECCCCCCCcEeEE
Confidence 8899999999999998889999999999999999999999999999999999987765678999999998 678999999
Q ss_pred EEEEccccCCCCCCCCCCccEEEEeecCCCC-----ccceEEEEEE
Q 001830 353 VRFDLNEVPTRVPPDSPLAAEWYRLEDRKGE-----KKKGELMLAV 393 (1008)
Q Consensus 353 ~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~-----~~~G~i~l~~ 393 (1008)
+.+++.++... .....|+.|.+.... ...|.|.+.+
T Consensus 82 ~~~~l~~l~~~-----~~~~~w~~L~~~~~~~~~~~~~~G~l~~~~ 122 (123)
T cd04025 82 VVFSIQTLQQA-----KQEEGWFRLLPDPRAEEESGGNLGSLRLKV 122 (123)
T ss_pred EEEEHHHcccC-----CCCCCEEECCCCCCCCccccCceEEEEEEe
Confidence 99999999754 234689999864322 2568888765
No 83
>cd08680 C2_Kibra C2 domain found in Human protein Kibra. Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom
Probab=99.70 E-value=7.9e-17 Score=149.73 Aligned_cols=112 Identities=21% Similarity=0.329 Sum_probs=94.8
Q ss_pred cccccccCcCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC------eEEEeeeecCCCCCeEeeEEEEEec--cCC
Q 001830 260 LRASTYDLVEQMRYLFVRVVKARDLPSKDVTGSLDPFVEVKVGN------YKGITKYYEKKQNPEWNEVFAFSRE--RIQ 331 (1008)
Q Consensus 260 ~~~~~~~~~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~------~~~kT~~~~~t~nP~w~e~f~f~~~--~~~ 331 (1008)
.+++.|+. ..+.|.|+|++|+||...+..|.+||||++++.+ .++||++++++.||+|||+|.|.+. ++.
T Consensus 4 ~~sL~Y~~--~~~~L~V~V~~arnL~~~~~~~~~dpyVKv~Llp~~~~~~~~~kT~v~~~t~nPvfnE~F~f~v~~~~L~ 81 (124)
T cd08680 4 QIGLRYDS--GDSSLVISVEQLRNLSALSIPENSKVYVRVALLPCSSSTSCLFRTKALEDQDKPVFNEVFRVPISSTKLY 81 (124)
T ss_pred EEEEEECC--CCCEEEEEEeEecCCcccccCCCCCeEEEEEEccCCCCCCceEEcCccCCCCCCccccEEEEECCHHHhh
Confidence 35667764 4578999999999999998888999999999863 3678999999999999999999974 456
Q ss_pred cCeEEEEEEecC-CCCCeeeEEEEEEccccCCCCCCCCCCccEEEEe
Q 001830 332 SSVLEVAVKDKD-VVKDDYVGLVRFDLNEVPTRVPPDSPLAAEWYRL 377 (1008)
Q Consensus 332 ~~~l~i~V~d~d-~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L 377 (1008)
...|.|.|||++ .+++++||++.|+|.++.... .....||.|
T Consensus 82 ~~~L~~~V~~~~~~~~~~~lG~~~i~L~~~~~~~----~~~~~Wy~l 124 (124)
T cd08680 82 QKTLQVDVCSVGPDQQEECLGGAQISLADFESSE----EMSTKWYNL 124 (124)
T ss_pred cCEEEEEEEeCCCCCceeEEEEEEEEhhhccCCC----ccccccccC
Confidence 789999999998 578999999999999996542 346789875
No 84
>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids
Probab=99.70 E-value=1.1e-16 Score=150.36 Aligned_cols=115 Identities=23% Similarity=0.283 Sum_probs=96.0
Q ss_pred cccccccCcCceeEEEEEEEEeecCCCCCCC-CCCCcEEEEEECC-----eEEEeeeecCCCCCeEeeEEEEEecc--CC
Q 001830 260 LRASTYDLVEQMRYLFVRVVKARDLPSKDVT-GSLDPFVEVKVGN-----YKGITKYYEKKQNPEWNEVFAFSRER--IQ 331 (1008)
Q Consensus 260 ~~~~~~~~~~~~~~L~V~v~~a~~L~~~d~~-g~~dpyv~v~~~~-----~~~kT~~~~~t~nP~w~e~f~f~~~~--~~ 331 (1008)
++++.|+.. .+.|.|+|++|+||+.++.. |.+||||++++.+ .+.||++++++.||+|||+|.|.+.. +.
T Consensus 5 ~~sl~Y~~~--~~~L~V~V~~a~nL~~~d~~~g~~dpYVkv~llp~~~~~~k~kT~v~~~t~nPvfNE~F~f~v~~~~l~ 82 (128)
T cd08392 5 EFALHYNFR--TSCLEITIKACRNLAYGDEKKKKCHPYVKVCLLPDKSHNSKRKTAVKKGTVNPVFNETLKYVVEADLLS 82 (128)
T ss_pred EEEEEEeCC--CCEEEEEEEecCCCCccCCCCCCCCeEEEEEEEeCCcccceeecccccCCCCCccceEEEEEcCHHHhC
Confidence 457777753 46999999999999998875 8999999999964 36799999999999999999999743 45
Q ss_pred cCeEEEEEEecC-CCCCeeeEEEEEEccccCCCCCCCCCCccEEEEee
Q 001830 332 SSVLEVAVKDKD-VVKDDYVGLVRFDLNEVPTRVPPDSPLAAEWYRLE 378 (1008)
Q Consensus 332 ~~~l~i~V~d~d-~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~ 378 (1008)
...|.|.|||.+ .+++++||++.|+|.++.... ..+...+||+|.
T Consensus 83 ~~~L~v~V~~~~~~~~~~~lG~~~i~L~~~~~~~--~~~~~~~W~~l~ 128 (128)
T cd08392 83 SRQLQVSVWHSRTLKRRVFLGEVLIPLADWDFED--TDSQRFLWYPLN 128 (128)
T ss_pred CcEEEEEEEeCCCCcCcceEEEEEEEcCCcccCC--CCccccceEECc
Confidence 679999999998 678999999999999996642 124678999873
No 85
>cd04011 C2B_Ferlin C2 domain second repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.70 E-value=6.7e-17 Score=149.00 Aligned_cols=105 Identities=23% Similarity=0.375 Sum_probs=89.4
Q ss_pred CceEEEEEEEeeCCCCCCCCCCCCcEEEEEECCeeeccccCCCCCCCeeeeEEEEEecCCC-CCCCceEEEEEEeCCCCC
Q 001830 3 HLKLGVEVVSAYELMPKDGQGSSNAFVELHFDGQKFRTTTKEKDLTPVWNESFYFNISDPH-NLSNLALDAYVYNHNRTT 81 (1008)
Q Consensus 3 ~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~~~t~nP~Wne~f~f~v~~~~-~~~~~~l~~~V~d~~~~~ 81 (1008)
.+.|+|+|++|++|+ .|.+||||+|++++++++|+++++++||+|||+|.|.+..+. ++....|.|+|||++.++
T Consensus 3 ~~~l~V~v~~a~~L~----~~~~dpyv~v~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~l~~~~l~i~V~d~~~~~ 78 (111)
T cd04011 3 DFQVRVRVIEARQLV----GGNIDPVVKVEVGGQKKYTSVKKGTNCPFYNEYFFFNFHESPDELFDKIIKISVYDSRSLR 78 (111)
T ss_pred cEEEEEEEEEcccCC----CCCCCCEEEEEECCEeeeeeEEeccCCCccccEEEEecCCCHHHHhcCeEEEEEEcCcccc
Confidence 478999999999998 578999999999999999999999999999999999975322 233468999999998875
Q ss_pred CCCCeeEEEEEeCcccCCC--CCceeEEEeccc
Q 001830 82 NSKSFLGKVRLTGTSFVPY--SDAVVLHYPLEK 112 (1008)
Q Consensus 82 ~~d~~lG~~~i~l~~l~~~--~~~~~~~~~L~~ 112 (1008)
+|++||++.++|.++... +.....||+|..
T Consensus 79 -~~~~iG~~~i~l~~v~~~~~~~~~~~w~~L~~ 110 (111)
T cd04011 79 -SDTLIGSFKLDVGTVYDQPDHAFLRKWLLLTD 110 (111)
T ss_pred -cCCccEEEEECCccccCCCCCcceEEEEEeeC
Confidence 689999999999998543 345678999964
No 86
>cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD). PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM
Probab=99.70 E-value=8.5e-17 Score=146.34 Aligned_cols=94 Identities=20% Similarity=0.319 Sum_probs=81.4
Q ss_pred ceEEEEEEEeeCCCCCCCC----CCCCcEEEEEECCeeeccccCCCCCCCeeeeEEEEEecCCCCCCCceEEEEEEeCCC
Q 001830 4 LKLGVEVVSAYELMPKDGQ----GSSNAFVELHFDGQKFRTTTKEKDLTPVWNESFYFNISDPHNLSNLALDAYVYNHNR 79 (1008)
Q Consensus 4 ~~L~V~v~~a~~L~~~d~~----g~~dPyv~v~~~~~~~~T~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~~~V~d~~~ 79 (1008)
+.|.|+|++|++|++.|.. +.+||||+|++++++++|+++++++||+|||+|.|.+.+.. ....|.|+|||+|.
T Consensus 1 g~l~v~v~~A~~L~~~~~~~~~~~~~DPYv~v~~~~~~~kT~v~~~t~nPvWne~f~f~v~~~~--~~~~L~~~V~D~d~ 78 (108)
T cd04039 1 GVVFMEIKSITDLPPLKNMTRTGFDMDPFVIISFGRRVFRTSWRRHTLNPVFNERLAFEVYPHE--KNFDIQFKVLDKDK 78 (108)
T ss_pred CEEEEEEEeeeCCCCccccCCCCCccCceEEEEECCEeEeeeeecCCCCCcccceEEEEEeCcc--CCCEEEEEEEECCC
Confidence 4799999999999987742 35899999999999999999999999999999999986432 34589999999988
Q ss_pred CCCCCCeeEEEEEeCcccCCC
Q 001830 80 TTNSKSFLGKVRLTGTSFVPY 100 (1008)
Q Consensus 80 ~~~~d~~lG~~~i~l~~l~~~ 100 (1008)
++ +|++||++.++|.++...
T Consensus 79 ~~-~dd~IG~~~l~L~~l~~~ 98 (108)
T cd04039 79 FS-FNDYVATGSLSVQELLNA 98 (108)
T ss_pred CC-CCcceEEEEEEHHHHHhh
Confidence 75 789999999999997543
No 87
>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv
Probab=99.69 E-value=1.3e-16 Score=150.59 Aligned_cols=106 Identities=20% Similarity=0.375 Sum_probs=91.1
Q ss_pred CceEEEEEEEeeCCCCCCCCCCCCcEEEEEEC---CeeeccccCCCCCCCeeeeEEEEEecCCCCCCCceEEEEEEeCCC
Q 001830 3 HLKLGVEVVSAYELMPKDGQGSSNAFVELHFD---GQKFRTTTKEKDLTPVWNESFYFNISDPHNLSNLALDAYVYNHNR 79 (1008)
Q Consensus 3 ~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~---~~~~~T~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~~~V~d~~~ 79 (1008)
.+.|.|+|++|+||+++|..|.+||||+|++. ++.++|+++++++||+|||+|.|.+.. ..+....|.|+|||++.
T Consensus 15 ~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~-~~l~~~~l~i~V~d~~~ 93 (124)
T cd08387 15 MGILNVKLIQARNLQPRDFSGTADPYCKVRLLPDRSNTKQSKIHKKTLNPEFDESFVFEVPP-QELPKRTLEVLLYDFDQ 93 (124)
T ss_pred CCEEEEEEEEeeCCCCCCCCCCCCCeEEEEEecCCCCcEeCceEcCCCCCCcccEEEEeCCH-HHhCCCEEEEEEEECCC
Confidence 36899999999999999999999999999984 346899999999999999999999753 33445689999999987
Q ss_pred CCCCCCeeEEEEEeCcccCCCCCceeEEEecc
Q 001830 80 TTNSKSFLGKVRLTGTSFVPYSDAVVLHYPLE 111 (1008)
Q Consensus 80 ~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~L~ 111 (1008)
++ +|++||++.+++.++.... ....||+|.
T Consensus 94 ~~-~~~~iG~~~i~l~~~~~~~-~~~~W~~l~ 123 (124)
T cd08387 94 FS-RDECIGVVELPLAEVDLSE-KLDLWRKIQ 123 (124)
T ss_pred CC-CCceeEEEEEecccccCCC-CcceEEECc
Confidence 75 7899999999999997655 456699985
No 88
>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin
Probab=99.69 E-value=1.4e-16 Score=156.18 Aligned_cols=108 Identities=30% Similarity=0.418 Sum_probs=91.0
Q ss_pred CceEEEEEEEeeCCCCCCCCCCCCcEEEEEEC-----CeeeccccCCCCCCCeeeeEEEEEecCCCCCCCceEEEEEEeC
Q 001830 3 HLKLGVEVVSAYELMPKDGQGSSNAFVELHFD-----GQKFRTTTKEKDLTPVWNESFYFNISDPHNLSNLALDAYVYNH 77 (1008)
Q Consensus 3 ~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~-----~~~~~T~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~~~V~d~ 77 (1008)
.+.|.|+|++|+||++.|..|.+||||+|++. ..+++|+++++|+||+|||+|.|.+...+++....|.|+|||+
T Consensus 26 ~g~L~V~Vi~A~nL~~~d~~g~~DPYVkv~l~~~~~~~~~~kT~vi~~t~nP~WnE~f~f~~~~~~~l~~~~L~i~V~d~ 105 (162)
T cd04020 26 TGELHVWVKEAKNLPALKSGGTSDSFVKCYLLPDKSKKSKQKTPVVKKSVNPVWNHTFVYDGVSPEDLSQACLELTVWDH 105 (162)
T ss_pred CceEEEEEEeeeCCCCCCCCCCCCCEEEEEEEcCCCCCcceeCCccCCCCCCCCCCEEEEecCCHHHhCCCEEEEEEEeC
Confidence 47899999999999999999999999999883 3568999999999999999999986444445556899999999
Q ss_pred CCCCCCCCeeEEEEEeCcccCCCCCceeEEEeccc
Q 001830 78 NRTTNSKSFLGKVRLTGTSFVPYSDAVVLHYPLEK 112 (1008)
Q Consensus 78 ~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~L~~ 112 (1008)
+.++ +|+|||++.+++.++...+. ...||.|..
T Consensus 106 d~~~-~d~~lG~v~i~l~~~~~~~~-~~~w~~~~~ 138 (162)
T cd04020 106 DKLS-SNDFLGGVRLGLGTGKSYGQ-AVDWMDSTG 138 (162)
T ss_pred CCCC-CCceEEEEEEeCCccccCCC-ccccccCCh
Confidence 8875 78999999999999876554 345877754
No 89
>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.69 E-value=1.9e-16 Score=149.71 Aligned_cols=119 Identities=24% Similarity=0.346 Sum_probs=98.3
Q ss_pred ceEEEEEEEeeCCCCCC-CCCCCCcEEEEEECC--eeeccccCCCCCCCeeeeEEEEEecCCCCCCCceEEEEEEeCCCC
Q 001830 4 LKLGVEVVSAYELMPKD-GQGSSNAFVELHFDG--QKFRTTTKEKDLTPVWNESFYFNISDPHNLSNLALDAYVYNHNRT 80 (1008)
Q Consensus 4 ~~L~V~v~~a~~L~~~d-~~g~~dPyv~v~~~~--~~~~T~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~~~V~d~~~~ 80 (1008)
+.|.|+|++|+||+..+ ..|.+||||++++++ ..++|+++++++||+|||.|.|.+.. ....|.|+|||++..
T Consensus 2 g~l~v~v~~a~~L~~~~~~~~~~dpyv~v~~~~~~~~~kT~~~~~~~~P~Wne~~~~~v~~----~~~~l~~~v~d~~~~ 77 (124)
T cd04044 2 GVLAVTIKSARGLKGSDIIGGTVDPYVTFSISNRRELARTKVKKDTSNPVWNETKYILVNS----LTEPLNLTVYDFNDK 77 (124)
T ss_pred eEEEEEEEcccCCCcccccCCCCCCeEEEEECCCCcceEeeeecCCCCCcceEEEEEEeCC----CCCEEEEEEEecCCC
Confidence 57999999999999766 356799999999988 67999999999999999999999852 235899999999876
Q ss_pred CCCCCeeEEEEEeCcccCCCCCceeEEEecccCCCCcccceEEEEEEEee
Q 001830 81 TNSKSFLGKVRLTGTSFVPYSDAVVLHYPLEKRSIFSRVKGELGLKVFVT 130 (1008)
Q Consensus 81 ~~~d~~lG~~~i~l~~l~~~~~~~~~~~~L~~~~~~~~~~G~i~~~~~~~ 130 (1008)
. +|++||++.+++.++.........+++|... .+..|+|++.+.|.
T Consensus 78 ~-~d~~iG~~~~~l~~l~~~~~~~~~~~~~~~~---~k~~G~i~~~l~~~ 123 (124)
T cd04044 78 R-KDKLIGTAEFDLSSLLQNPEQENLTKNLLRN---GKPVGELNYDLRFF 123 (124)
T ss_pred C-CCceeEEEEEEHHHhccCccccCcchhhhcC---CccceEEEEEEEeC
Confidence 5 7899999999999987665543335566532 35679999999875
No 90
>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=99.69 E-value=1.8e-16 Score=144.45 Aligned_cols=102 Identities=28% Similarity=0.460 Sum_probs=92.0
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECCeEEEeeeecCCCCCeEeeEEEEEeccCCcCeEEEEEEecCCCCCeeeEEE
Q 001830 274 LFVRVVKARDLPSKDVTGSLDPFVEVKVGNYKGITKYYEKKQNPEWNEVFAFSRERIQSSVLEVAVKDKDVVKDDYVGLV 353 (1008)
Q Consensus 274 L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~~~~~t~nP~w~e~f~f~~~~~~~~~l~i~V~d~d~~~d~~lG~~ 353 (1008)
|.|+|++|++|+..+..+.+||||+++++++.++|++++++.||+|||+|.|.+.+.....|.|+|+|++. +++||++
T Consensus 2 L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~v~v~d~~~--~~~iG~~ 79 (105)
T cd04050 2 LFVYLDSAKNLPLAKSTKEPSPYVELTVGKTTQKSKVKERTNNPVWEEGFTFLVRNPENQELEIEVKDDKT--GKSLGSL 79 (105)
T ss_pred EEEEEeeecCCCCcccCCCCCcEEEEEECCEEEeCccccCCCCCcccceEEEEeCCCCCCEEEEEEEECCC--CCccEEE
Confidence 78999999999998888999999999999999999999999999999999999987667789999999876 8999999
Q ss_pred EEEccccCCCCCCCCCCccEEEEeecC
Q 001830 354 RFDLNEVPTRVPPDSPLAAEWYRLEDR 380 (1008)
Q Consensus 354 ~i~l~~l~~~~~~~~~~~~~w~~L~~~ 380 (1008)
.++|.++.... ....+.||+|.+.
T Consensus 80 ~i~l~~l~~~~---~~~~~~w~~L~~~ 103 (105)
T cd04050 80 TLPLSELLKEP---DLTLDQPFPLDNS 103 (105)
T ss_pred EEEHHHhhccc---cceeeeeEecCCC
Confidence 99999998641 2457899999764
No 91
>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular
Probab=99.69 E-value=3.8e-16 Score=147.01 Aligned_cols=114 Identities=36% Similarity=0.590 Sum_probs=99.0
Q ss_pred eEEEEEEEEeecCCCCCC------CCCCCcEEEEEECCeEEEeeeecCCCCCeEeeEEEEEeccCCcCeEEEEEEecCCC
Q 001830 272 RYLFVRVVKARDLPSKDV------TGSLDPFVEVKVGNYKGITKYYEKKQNPEWNEVFAFSRERIQSSVLEVAVKDKDVV 345 (1008)
Q Consensus 272 ~~L~V~v~~a~~L~~~d~------~g~~dpyv~v~~~~~~~kT~~~~~t~nP~w~e~f~f~~~~~~~~~l~i~V~d~d~~ 345 (1008)
|.|+|+|++|+||+..|. .|.+||||+++++++.++|++++++.||.|||+|.|.+.+.....|.|+|||++..
T Consensus 1 g~l~v~v~~a~~L~~~d~~~~~~~~g~~dPyv~v~~~~~~~kT~~~~~t~~P~W~e~f~~~v~~~~~~~l~i~v~d~~~~ 80 (121)
T cd08391 1 GVLRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGAQTFKSKVIKENLNPKWNEVYEAVVDEVPGQELEIELFDEDPD 80 (121)
T ss_pred CeEEEEEEEccCCcccccccccCCCCCcCCEEEEEECCEeEEccccCCCCCCcccceEEEEeCCCCCCEEEEEEEecCCC
Confidence 479999999999998774 36899999999999999999999999999999999999776678999999999955
Q ss_pred CCeeeEEEEEEccccCCCCCCCCCCccEEEEeecCCCCccceEEEEEEE
Q 001830 346 KDDYVGLVRFDLNEVPTRVPPDSPLAAEWYRLEDRKGEKKKGELMLAVW 394 (1008)
Q Consensus 346 ~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~G~i~l~~~ 394 (1008)
++++||.+.+++.++..+ .....|++|.+. ..|+|++.+.
T Consensus 81 ~~~~iG~~~i~l~~l~~~-----~~~~~w~~L~~~----~~G~~~~~~~ 120 (121)
T cd08391 81 KDDFLGRLSIDLGSVEKK-----GFIDEWLPLEDV----KSGRLHLKLE 120 (121)
T ss_pred CCCcEEEEEEEHHHhccc-----CccceEEECcCC----CCceEEEEEe
Confidence 999999999999999864 346799999865 2388888763
No 92
>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]
Probab=99.69 E-value=6.1e-17 Score=185.59 Aligned_cols=400 Identities=19% Similarity=0.199 Sum_probs=246.5
Q ss_pred eeEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEEEeeeecCCCCCeEeeEEEEEeccC---------CcCeEEEEEEe
Q 001830 271 MRYLFVRVVKARDLPSKDVTGSLDPFVEVKVGNYKGITKYYEKKQNPEWNEVFAFSRERI---------QSSVLEVAVKD 341 (1008)
Q Consensus 271 ~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~~~~~t~nP~w~e~f~f~~~~~---------~~~~l~i~V~d 341 (1008)
...+++.+.+|+.|.+.|..+.+|||+.+.+.++.+.|-++.+|+||.|+++..|.-.+. .-..+.|+|+|
T Consensus 205 ~~~lR~yiyQar~L~a~dk~~~sdp~a~v~f~~qs~~T~~v~~tl~ptwdq~~~f~~~ei~ge~~~~~~~ppi~v~e~yd 284 (1105)
T KOG1326|consen 205 HSPLRSYIYQARALGAPDKDDESDPDAAVEFCGQSKETEVVPGTLNPTWDQTIIFDEVEIYGEAHLVLKNPPIRVFEVYD 284 (1105)
T ss_pred hhhhHHHHHHHHhhcCCCcccCCCchhhhhcccccceeEeecCcCCCCccceeeccceeecCccchhhcCCCeEEEEeeh
Confidence 346888999999999999999999999999999999999999999999999999962111 12578899999
Q ss_pred cC-CCCCeeeEEEEEEccccCCCCCCCCCCccEEEEeecCCCCccceEEEEEEEEeccCCCcCCCcCCCCCCCCCCCCCC
Q 001830 342 KD-VVKDDYVGLVRFDLNEVPTRVPPDSPLAAEWYRLEDRKGEKKKGELMLAVWYGTQADEAFPDAWHSDAVTPTDSPSN 420 (1008)
Q Consensus 342 ~d-~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~G~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 420 (1008)
.+ .+.++++|.+.....-... +....|+++..... ..|++.++......+- +-.+. +.....
T Consensus 285 ~dr~g~~ef~gr~~~~p~V~~~------~p~lkw~p~~rg~~--l~gd~l~a~eliq~~~---~i~~p------~~~~~~ 347 (1105)
T KOG1326|consen 285 LDRSGINEFKGRKKQRPYVMVQ------CPALKWVPTMRGAF--LDGDVLIAAELIQIGK---PIPQP------PPQREI 347 (1105)
T ss_pred hhhhchHHhhcccccceEEEec------CCccceEEeecccc--cccchhHHHHHHhhcC---CCCCC------Cccccc
Confidence 99 6789999998875443332 23468999876543 3466665542221111 00110 100000
Q ss_pred cccccccccccCCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECCEEEEeeeccCCCCCCcccceeEEEe-eCC----
Q 001830 421 VSTHIRSKVYHSPRLWYVRVNVMEAQDLVISDKNRFPDAYVKVQIGNQVLKTKSVQSRTLNPVWNEDMMFVA-SEP---- 495 (1008)
Q Consensus 421 ~~~~~~~~~~~~~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~kT~~v~~~~~nP~w~e~f~f~v-~~~---- 495 (1008)
....+-.+.....+.+.+.|-...-+|+..........|-+.+.+|++...+..+...-.||.|+..+.+-. .-+
T Consensus 348 ~~~~vp~~iRp~~q~~~~evl~wgLrn~k~~~m~~~~~P~~~~e~g~e~v~s~~I~~~k~npnf~s~~~~~~v~lpd~e~ 427 (1105)
T KOG1326|consen 348 IFSLVPKKIRPKTQIGKAELLMWGLRNPKKSGMASTFSPALLVEFGGERVSSFSIFNRKKNPNFPSRVLGRLVILPDEEL 427 (1105)
T ss_pred ceeccccCCCcceeeeeeehhhhhhcccccccccccCCcceeEeeCCceEeeeeehhhhhCCCCceeEEEEEEeccchHh
Confidence 001111111112234445544444455544444556789999999999999988865667888887665433 222
Q ss_pred CCCcEEEEEEeccCCCCCceeEEEEEe-Ccccccccc-----------C-------------CcccceeEEc--------
Q 001830 496 FEDHLILTVEDRVGPNKDETIGKVVIP-LHSVEKRAD-----------D-------------RIVHTRWFNL-------- 542 (1008)
Q Consensus 496 ~~~~l~i~v~d~d~~~~d~~lG~~~i~-l~~l~~~~~-----------~-------------~~~~~~w~~L-------- 542 (1008)
....+.++|.|.+.++.-...|.|.+. +........ + ......|++.
T Consensus 428 Y~ppl~akvvd~~~fg~~~v~g~c~i~~l~nf~c~p~~~~~~~Pq~~~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~e 507 (1105)
T KOG1326|consen 428 YMPPLNAKVVDLRQFGRMEVVGQCKILSLYNFFCDPSAVNSITPQFASDPVSIMMGSTDNEIRHCNSSTLPASPHEDEEE 507 (1105)
T ss_pred hCccceeEEEecccccceeehhhhcchhhhhhccCchhhcccCcCCCCCchhhhcCCchhhhhhccccCCCCCccccccc
Confidence 234789999999999999999999875 222211100 0 0000111111
Q ss_pred ---------ccCccccccCC---Cc------------c-CCccCc----ceEEEEeecCCcc------ccCCcc------
Q 001830 543 ---------EKSVSAALDGD---NA------------K-KDKFSS----RLHLRVCLDGGYH------VLDEST------ 581 (1008)
Q Consensus 543 ---------~~~~~~~~~~~---~~------------~-~~~~~g----~i~l~v~~~~~~~------~~~~~~------ 581 (1008)
....+..+... .+ + -..|.| .+.+.++.....+ +..+..
T Consensus 508 ~~~~~w~k~~~~~~~~~k~~~~~~K~~~~LKiyn~ele~v~ef~~l~D~~~~f~l~rG~~~~e~~e~~Ivg~fKgl~rIy 587 (1105)
T KOG1326|consen 508 REVDWWGKFYPSAEENAKWEVYEHKINVTLKIYNMELEMVAEFRGLQDWAVTFKLYRGKEGLECLEQQIVGEFKGLFRIY 587 (1105)
T ss_pred eehhhhhhccccccccccccccccccceEEEEehhhhhhHHHHhhhhhccceeEeeeccccCCCcccchhhhhhcceeee
Confidence 11110000000 00 0 000111 1111111110000 000000
Q ss_pred c----cCCCCCcc-ccccC--CCceeEEEEEEEeecCCCCCccCCCCCCCCeEEEEEECCEEE--EeeeecCCCCccccc
Q 001830 582 H----YSSDLRPT-AKQLW--KPSIGVLELGILNADGLHPMKTRDGRGTADTYCVAKYGHKWV--RTRTIINSLSAKYNE 652 (1008)
Q Consensus 582 ~----~~~d~~~~-~~~~~--~~~~g~L~v~v~~a~~L~~~~~~~~~g~~dpyv~~~~~~~~~--~T~~~~~~~nP~wne 652 (1008)
. .+.+..|. ...+. .+..-.++|.|.+|.+|.+. |.+|.+|||+++.+|.+.. +...+.+|+||+|++
T Consensus 588 p~~~~~~~p~~pr~~~~~~~~~pi~~LvrVyvv~A~~L~p~---D~ng~adpYv~l~lGk~~~~d~~~yip~tlnPVfgk 664 (1105)
T KOG1326|consen 588 PVPRNPSSPAPPRHFLDLPKEEPIKCLVRVYVVEAFSLQPS---DGNGDADPYVKLLLGKKRTLDRAHYIPNTLNPVFGK 664 (1105)
T ss_pred cCCCccCCCCChhhhhcccccCcceeeEEEEEEEeeecccc---CCCCCcCceeeeeeccchhhhhhhcCcCCCCcHHHH
Confidence 0 00000000 00000 14456788999999999975 6899999999999999874 777888999999999
Q ss_pred EEEEEeeCCCc-eEEEEEEeCCCCCCCCCCCCceeEEEEEEccc
Q 001830 653 QYTWEVYDPAT-VLTVGVFDNSHIGGSSGSKDVKIGKVRIRIST 695 (1008)
Q Consensus 653 ~f~~~v~~~~~-~l~i~V~d~~~~~~~~~~~d~~lG~~~i~l~~ 695 (1008)
.|++....|.. .++++|||+|.++ .|+.||...|+|..
T Consensus 665 mfel~~~lp~ek~l~v~vyd~D~~~-----~d~~iget~iDLEn 703 (1105)
T KOG1326|consen 665 MFELECLLPFEKDLIVEVYDHDLEA-----QDEKIGETTIDLEN 703 (1105)
T ss_pred HHHhhcccchhhcceeEEEEeeccc-----ccchhhceehhhhh
Confidence 99999998854 6999999999877 89999999999865
No 93
>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.69 E-value=1.7e-16 Score=150.06 Aligned_cols=107 Identities=27% Similarity=0.378 Sum_probs=90.7
Q ss_pred CceEEEEEEEeeCCCCCCCCCCCCcEEEEEEC---CeeeccccCCCCCCCeeeeEEEEEecCCCCCCCceEEEEEEeCCC
Q 001830 3 HLKLGVEVVSAYELMPKDGQGSSNAFVELHFD---GQKFRTTTKEKDLTPVWNESFYFNISDPHNLSNLALDAYVYNHNR 79 (1008)
Q Consensus 3 ~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~---~~~~~T~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~~~V~d~~~ 79 (1008)
.+.|.|+|++|+||+..|..|.+||||++.+. +++++|+++++++||+|||+|.|.+...+.+....|.|+|||++.
T Consensus 15 ~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~kT~v~~~t~~P~Wne~f~f~~~~~~~l~~~~l~~~v~d~d~ 94 (125)
T cd08386 15 ESTLTLKILKAVELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPYEKLQQRVLYLQVLDYDR 94 (125)
T ss_pred CCEEEEEEEEecCCCCccCCCCCCceEEEEECCCCCcceeeeeecCCCCCccceeEEEcccCHHHhCCCEEEEEEEeCCC
Confidence 46899999999999999999999999999983 456899999999999999999998543333445689999999988
Q ss_pred CCCCCCeeEEEEEeCcccCCCCCceeEEEecc
Q 001830 80 TTNSKSFLGKVRLTGTSFVPYSDAVVLHYPLE 111 (1008)
Q Consensus 80 ~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~L~ 111 (1008)
++ +++|||++.+++.++.. +.....|+.|.
T Consensus 95 ~~-~~~~iG~~~i~l~~l~~-~~~~~~W~~l~ 124 (125)
T cd08386 95 FS-RNDPIGEVSLPLNKVDL-TEEQTFWKDLK 124 (125)
T ss_pred Cc-CCcEeeEEEEecccccC-CCCcceEEecC
Confidence 75 78999999999999875 44456699885
No 94
>cd04046 C2_Calpain C2 domain present in Calpain proteins. A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic
Probab=99.68 E-value=7.8e-16 Score=145.18 Aligned_cols=120 Identities=19% Similarity=0.297 Sum_probs=100.0
Q ss_pred eeEEEEEEEeecCCCCCccCCCCCCCCeEEEEEECCEEEEeeeecCCCCcccccEEEEEeeCCCceEEEEEEeCCCCCCC
Q 001830 599 IGVLELGILNADGLHPMKTRDGRGTADTYCVAKYGHKWVRTRTIINSLSAKYNEQYTWEVYDPATVLTVGVFDNSHIGGS 678 (1008)
Q Consensus 599 ~g~L~v~v~~a~~L~~~~~~~~~g~~dpyv~~~~~~~~~~T~~~~~~~nP~wne~f~~~v~~~~~~l~i~V~d~~~~~~~ 678 (1008)
.+.|+|+|++|++|+.. +..|.+||||++.++++.++|++++++.||.|||.|.|.+.++...|.|+|||++.+
T Consensus 2 ~~~~~V~v~~A~~L~~~---d~~g~~dPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~l~i~V~d~~~~--- 75 (126)
T cd04046 2 QVVTQVHVHSAEGLSKQ---DSGGGADPYVIIKCEGESVRSPVQKDTLSPEFDTQAIFYRKKPRSPIKIQVWNSNLL--- 75 (126)
T ss_pred cEEEEEEEEeCcCCCCC---CCCCCcCccEEEEECCEEEEeCccCCCCCCcccceEEEEecCCCCEEEEEEEECCCC---
Confidence 36899999999999965 457899999999999999999999999999999999999988888999999999864
Q ss_pred CCCCCceeEEEEEEcccccCCCeEEeeEeeeecCC-CCCccccEEEEEEEEE
Q 001830 679 SGSKDVKIGKVRIRISTLETGRVYTHSYPLLVLHP-SGVKKMGELHLAIRFS 729 (1008)
Q Consensus 679 ~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~-~~~~~~G~i~l~~~f~ 729 (1008)
+|++||++.++++++..+. .++|+|..... ...+..|+|.+++.+.
T Consensus 76 ---~d~~lG~~~~~l~~~~~~~--~~~~~l~~~~~~~~~~~~G~i~~~~~~~ 122 (126)
T cd04046 76 ---CDEFLGQATLSADPNDSQT--LRTLPLRKRGRDAAGEVPGTISVKVTSS 122 (126)
T ss_pred ---CCCceEEEEEecccCCCcC--ceEEEcccCCCCCCCCCCCEEEEEEEEc
Confidence 4899999999998865433 58899963321 2223469999988753
No 95
>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD). PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic
Probab=99.68 E-value=7.8e-16 Score=150.41 Aligned_cols=119 Identities=24% Similarity=0.425 Sum_probs=100.9
Q ss_pred eeEEEEEEEEeecCCCCC------------------------------CCCCCCcEEEEEECCeE-EEeeeecCCCCCeE
Q 001830 271 MRYLFVRVVKARDLPSKD------------------------------VTGSLDPFVEVKVGNYK-GITKYYEKKQNPEW 319 (1008)
Q Consensus 271 ~~~L~V~v~~a~~L~~~d------------------------------~~g~~dpyv~v~~~~~~-~kT~~~~~t~nP~w 319 (1008)
.|.|.|+|.+|++|+.+| ..|.+||||+|.+++.+ .+|++++++.||+|
T Consensus 6 hG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~sDPYv~V~l~~~~~~rT~v~~~~~nP~W 85 (158)
T cd04015 6 HGTLDVTIYEADNLPNMDMFSEKLRRFFSKLVGCSEPTLKRPSSHRHVGKITSDPYATVDLAGARVARTRVIENSENPVW 85 (158)
T ss_pred eeeeEEEEEEeccCCCcccccchhhHHHHHHHhhcccccccccccccCCCCCcCeEEEEEECCeEeeEEEEeCCCCCCcc
Confidence 378999999999999987 34678999999999865 69999999999999
Q ss_pred eeEEEEEeccCCcCeEEEEEEecCCCCCeeeEEEEEEccccCCCCCCCCCCccEEEEeecCCCCc--cceEEEEEEEE
Q 001830 320 NEVFAFSRERIQSSVLEVAVKDKDVVKDDYVGLVRFDLNEVPTRVPPDSPLAAEWYRLEDRKGEK--KKGELMLAVWY 395 (1008)
Q Consensus 320 ~e~f~f~~~~~~~~~l~i~V~d~d~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~--~~G~i~l~~~~ 395 (1008)
||+|.|.+... ...|.|.|||+|..++++||.+.+++.++..+ .....|++|.+..+.. ..|.|++++.|
T Consensus 86 nE~F~~~~~~~-~~~l~~~V~d~d~~~~~~IG~~~i~l~~l~~g-----~~~~~w~~L~~~~~~~~~~~~~l~v~~~f 157 (158)
T cd04015 86 NESFHIYCAHY-ASHVEFTVKDNDVVGAQLIGRAYIPVEDLLSG-----EPVEGWLPILDSNGKPPKPGAKIRVSLQF 157 (158)
T ss_pred ceEEEEEccCC-CCEEEEEEEeCCCcCCcEEEEEEEEhHHccCC-----CCcceEEECcCCCCCCCCCCCEEEEEEEE
Confidence 99999998665 36899999999965679999999999999864 4467999998764443 45799999887
No 96
>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2). A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o
Probab=99.68 E-value=4.2e-16 Score=145.77 Aligned_cols=113 Identities=32% Similarity=0.445 Sum_probs=97.3
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECC---eEEEeeeecCCCCCeEeeEEEEEeccCCcCeEEEEEEecCCCCCeee
Q 001830 274 LFVRVVKARDLPSKDVTGSLDPFVEVKVGN---YKGITKYYEKKQNPEWNEVFAFSRERIQSSVLEVAVKDKDVVKDDYV 350 (1008)
Q Consensus 274 L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~---~~~kT~~~~~t~nP~w~e~f~f~~~~~~~~~l~i~V~d~d~~~d~~l 350 (1008)
|.|+|++|++|+..+..+.+||||++++++ .+++|++++++.||+|||+|.|.+.......|.|+|||++..++++|
T Consensus 2 L~V~vi~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~vv~~t~nP~Wne~f~f~i~~~~~~~l~v~v~d~d~~~~~~i 81 (119)
T cd04036 2 LTVRVLRATNITKGDLLSTPDCYVELWLPTASDEKKRTKTIKNSINPVWNETFEFRIQSQVKNVLELTVMDEDYVMDDHL 81 (119)
T ss_pred eEEEEEEeeCCCccCCCCCCCcEEEEEEcCCCCccCccceecCCCCCccceEEEEEeCcccCCEEEEEEEECCCCCCccc
Confidence 789999999999988888999999999964 56899999999999999999999876555689999999994499999
Q ss_pred EEEEEEccccCCCCCCCCCCccEEEEeecCCCCccceEEEEEEEE
Q 001830 351 GLVRFDLNEVPTRVPPDSPLAAEWYRLEDRKGEKKKGELMLAVWY 395 (1008)
Q Consensus 351 G~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~G~i~l~~~~ 395 (1008)
|++.+++.++..+ .....|++|.+.. .|++.+++.+
T Consensus 82 G~~~~~l~~l~~g-----~~~~~~~~L~~~~----~g~l~~~~~~ 117 (119)
T cd04036 82 GTVLFDVSKLKLG-----EKVRVTFSLNPQG----KEELEVEFLL 117 (119)
T ss_pred EEEEEEHHHCCCC-----CcEEEEEECCCCC----CceEEEEEEe
Confidence 9999999999865 4567999998653 3888877754
No 97
>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap
Probab=99.68 E-value=7.8e-16 Score=145.81 Aligned_cols=117 Identities=21% Similarity=0.264 Sum_probs=98.0
Q ss_pred ceEEEEEEEeeCCCCCCCCCCCCcEEEEEECCe---eeccccCCCCCCCeeeeEEEEEecCCCCCCCceEEEEEEeCCCC
Q 001830 4 LKLGVEVVSAYELMPKDGQGSSNAFVELHFDGQ---KFRTTTKEKDLTPVWNESFYFNISDPHNLSNLALDAYVYNHNRT 80 (1008)
Q Consensus 4 ~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~---~~~T~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~~~V~d~~~~ 80 (1008)
+.|.|+|++|++|+..+..|.+||||++.+++. .++|+++++++||+|||+|.|.+... ....|.|+|||++..
T Consensus 1 ~~~~V~v~~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~~~~~t~~P~Wne~f~f~i~~~---~~~~L~i~v~d~d~~ 77 (126)
T cd04043 1 HLFTIRIVRAENLKADSSNGLSDPYVTLVDTNGKRRIAKTRTIYDTLNPRWDEEFELEVPAG---EPLWISATVWDRSFV 77 (126)
T ss_pred CEEEEEEEEeECCCCCCCCCCCCceEEEEECCCCeeeecccEecCCCCCcccceEEEEcCCC---CCCEEEEEEEECCCC
Confidence 468999999999999999999999999998743 58999999999999999999998642 235899999999876
Q ss_pred CCCCCeeEEEEEeCcccCC-C-CCceeEEEecccCCCCcccceEEEEEEEeec
Q 001830 81 TNSKSFLGKVRLTGTSFVP-Y-SDAVVLHYPLEKRSIFSRVKGELGLKVFVTD 131 (1008)
Q Consensus 81 ~~~d~~lG~~~i~l~~l~~-~-~~~~~~~~~L~~~~~~~~~~G~i~~~~~~~~ 131 (1008)
+ ++++||++.++|..+.. . +.....|++|.. .|.|++++.+..
T Consensus 78 ~-~~~~iG~~~i~l~~~~~~~~~~~~~~w~~l~~-------~g~i~l~~~~~~ 122 (126)
T cd04043 78 G-KHDLCGRASLKLDPKRFGDDGLPREIWLDLDT-------QGRLLLRVSMEG 122 (126)
T ss_pred C-CCceEEEEEEecCHHHcCCCCCCceEEEEcCC-------CCeEEEEEEEee
Confidence 5 78999999999987543 2 445567999975 489988887755
No 98
>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins. KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1
Probab=99.68 E-value=2.9e-16 Score=149.05 Aligned_cols=107 Identities=27% Similarity=0.372 Sum_probs=90.8
Q ss_pred CceEEEEEEEeeCCCCCCCCCCCCcEEEEEEC-----CeeeccccCCCCCCCeeeeEEEEEecCCCCCCCceEEEEEEeC
Q 001830 3 HLKLGVEVVSAYELMPKDGQGSSNAFVELHFD-----GQKFRTTTKEKDLTPVWNESFYFNISDPHNLSNLALDAYVYNH 77 (1008)
Q Consensus 3 ~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~-----~~~~~T~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~~~V~d~ 77 (1008)
...|.|+|++|+||+..|..+.+||||+|++. ..+++|+++++++||+|||+|.|.+.. ..+....|.|.|||+
T Consensus 15 ~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~~~nP~wne~f~f~i~~-~~l~~~~l~i~v~~~ 93 (127)
T cd04030 15 RQKLIVTVHKCRNLPPCDSSDIPDPYVRLYLLPDKSKSTRRKTSVKKDNLNPVFDETFEFPVSL-EELKRRTLDVAVKNS 93 (127)
T ss_pred CCEEEEEEEEEECCCCccCCCCCCceEEEEEEcCCCCCceEecccccCCCCCEECeEEEEecCH-HHhcCCEEEEEEEEC
Confidence 36899999999999999998999999999985 356899999999999999999999853 334556899999999
Q ss_pred CCC-CCCCCeeEEEEEeCcccCCCCCceeEEEecc
Q 001830 78 NRT-TNSKSFLGKVRLTGTSFVPYSDAVVLHYPLE 111 (1008)
Q Consensus 78 ~~~-~~~d~~lG~~~i~l~~l~~~~~~~~~~~~L~ 111 (1008)
+.+ .++|++||++.+++.++... .....||+|+
T Consensus 94 ~~~~~~~~~~iG~~~i~l~~l~~~-~~~~~W~~L~ 127 (127)
T cd04030 94 KSFLSREKKLLGQVLIDLSDLDLS-KGFTQWYDLT 127 (127)
T ss_pred CcccCCCCceEEEEEEeccccccc-CCccceEECc
Confidence 875 24789999999999998554 3456699884
No 99
>cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3). RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.67 E-value=3.7e-16 Score=149.79 Aligned_cols=103 Identities=28% Similarity=0.413 Sum_probs=87.3
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eEEEeeeecCCCCCeEeeEEEEEec---------------cCCcC
Q 001830 274 LFVRVVKARDLPSKDVTGSLDPFVEVKVGN-----YKGITKYYEKKQNPEWNEVFAFSRE---------------RIQSS 333 (1008)
Q Consensus 274 L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~-----~~~kT~~~~~t~nP~w~e~f~f~~~---------------~~~~~ 333 (1008)
|.|+|++|+||.. ..|.+||||+|++.+ .+++|+++++|.||+|||+|.|.+. +....
T Consensus 2 L~V~Vi~ArnL~~--~~g~sDPYV~V~l~~~~~k~~~~kT~v~~~t~nP~wNE~F~F~v~~~~~~~~~~~~~~~~~~~~~ 79 (148)
T cd04010 2 LSVRVIECSDLAL--KNGTCDPYASVTLIYSNKKQDTKRTKVKKKTNNPQFDEAFYFDVTIDSSPEKKQFEMPEEDAEKL 79 (148)
T ss_pred EEEEEEeCcCCCC--CCCCCCceEEEEEeCCcccCcccCCccEeCCCCCccceEEEEEEecccccccccccCCcccccEE
Confidence 7899999999987 568999999999976 5679999999999999999999984 22346
Q ss_pred eEEEEEEecC-CCCCeeeEEEEEEccccCCCCCCCCCCccEEEEeecCCC
Q 001830 334 VLEVAVKDKD-VVKDDYVGLVRFDLNEVPTRVPPDSPLAAEWYRLEDRKG 382 (1008)
Q Consensus 334 ~l~i~V~d~d-~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~ 382 (1008)
.|.|.|||++ .++|++||++.|++..+... ......||+|.+...
T Consensus 80 ~L~i~V~d~~~~~~ddfLG~v~i~l~~l~~~----~~~~~~W~~L~~~~~ 125 (148)
T cd04010 80 ELRVDLWHASMGGGDVFLGEVRIPLRGLDLQ----AGSHQAWYFLQPREE 125 (148)
T ss_pred EEEEEEEcCCCCCCCceeEEEEEeccccccc----CCcCcceeecCCccc
Confidence 7999999998 56899999999999998864 123578999986543
No 100
>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv
Probab=99.67 E-value=6.5e-16 Score=145.75 Aligned_cols=104 Identities=22% Similarity=0.413 Sum_probs=91.3
Q ss_pred ceeEEEEEEEeecCCCCCccCCCCCCCCeEEEEEEC---CEEEEeeeecCCCCcccccEEEEEeeCC---CceEEEEEEe
Q 001830 598 SIGVLELGILNADGLHPMKTRDGRGTADTYCVAKYG---HKWVRTRTIINSLSAKYNEQYTWEVYDP---ATVLTVGVFD 671 (1008)
Q Consensus 598 ~~g~L~v~v~~a~~L~~~~~~~~~g~~dpyv~~~~~---~~~~~T~~~~~~~nP~wne~f~~~v~~~---~~~l~i~V~d 671 (1008)
..|.|.|+|++|+||+++ +..|.+||||++.++ ....+|++++++.||.|||.|.|.+... ...|.|+|||
T Consensus 14 ~~~~L~V~v~~a~~L~~~---d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~l~~~~l~i~V~d 90 (124)
T cd08387 14 DMGILNVKLIQARNLQPR---DFSGTADPYCKVRLLPDRSNTKQSKIHKKTLNPEFDESFVFEVPPQELPKRTLEVLLYD 90 (124)
T ss_pred CCCEEEEEEEEeeCCCCC---CCCCCCCCeEEEEEecCCCCcEeCceEcCCCCCCcccEEEEeCCHHHhCCCEEEEEEEE
Confidence 448999999999999965 457889999999983 3468999999999999999999998753 4579999999
Q ss_pred CCCCCCCCCCCCceeEEEEEEcccccCCCeEEeeEeee
Q 001830 672 NSHIGGSSGSKDVKIGKVRIRISTLETGRVYTHSYPLL 709 (1008)
Q Consensus 672 ~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~ 709 (1008)
++.++ ++++||++.|+|+++..+...+.||+|.
T Consensus 91 ~~~~~-----~~~~iG~~~i~l~~~~~~~~~~~W~~l~ 123 (124)
T cd08387 91 FDQFS-----RDECIGVVELPLAEVDLSEKLDLWRKIQ 123 (124)
T ss_pred CCCCC-----CCceeEEEEEecccccCCCCcceEEECc
Confidence 99776 8999999999999998777889999985
No 101
>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.67 E-value=9.1e-16 Score=145.35 Aligned_cols=116 Identities=22% Similarity=0.332 Sum_probs=97.9
Q ss_pred EEEeeCCCCCCCCCCCCcEEEEEECCeeeccccCCCCCCCeeeeEEEEEecCCCCCCCceEEEEEEeCCCCCCCCCeeEE
Q 001830 10 VVSAYELMPKDGQGSSNAFVELHFDGQKFRTTTKEKDLTPVWNESFYFNISDPHNLSNLALDAYVYNHNRTTNSKSFLGK 89 (1008)
Q Consensus 10 v~~a~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~~~V~d~~~~~~~d~~lG~ 89 (1008)
|++|++|++ ..|.+||||+|++++.+++|++++++.||+|||+|.|.+.... .....|.|+|||++..+ +|++||+
T Consensus 2 vi~a~~L~~--~~g~~Dpyv~v~~~~~~~kT~v~~~~~nP~Wne~f~f~~~~~~-~~~~~l~~~v~d~~~~~-~d~~iG~ 77 (127)
T cd08373 2 VVSLKNLPG--LKGKGDRIAKVTFRGVKKKTRVLENELNPVWNETFEWPLAGSP-DPDESLEIVVKDYEKVG-RNRLIGS 77 (127)
T ss_pred eEEeeCCcc--cCCCCCCEEEEEECCEeeecceeCCCcCCcccceEEEEeCCCc-CCCCEEEEEEEECCCCC-CCceEEE
Confidence 789999998 6789999999999999999999999999999999999986432 34568999999998775 7899999
Q ss_pred EEEeCcccCCCCCceeEEEecccCCCCcccceEEEEEEEeec
Q 001830 90 VRLTGTSFVPYSDAVVLHYPLEKRSIFSRVKGELGLKVFVTD 131 (1008)
Q Consensus 90 ~~i~l~~l~~~~~~~~~~~~L~~~~~~~~~~G~i~~~~~~~~ 131 (1008)
+.+++.++... .....|++|.+... ....|+|++.+.+.+
T Consensus 78 ~~~~l~~l~~~-~~~~~~~~L~~~~~-~~~~~~l~l~~~~~~ 117 (127)
T cd08373 78 ATVSLQDLVSE-GLLEVTEPLLDSNG-RPTGATISLEVSYQP 117 (127)
T ss_pred EEEEhhHcccC-CceEEEEeCcCCCC-CcccEEEEEEEEEeC
Confidence 99999998754 44556899986543 235799999998866
No 102
>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.67 E-value=7.1e-16 Score=145.85 Aligned_cols=120 Identities=29% Similarity=0.365 Sum_probs=99.8
Q ss_pred eeEEEEEEEeecCCCCCccCCCCCCCCeEEEEEECC--EEEEeeeecCCCCcccccEEEEEeeCCCceEEEEEEeCCCCC
Q 001830 599 IGVLELGILNADGLHPMKTRDGRGTADTYCVAKYGH--KWVRTRTIINSLSAKYNEQYTWEVYDPATVLTVGVFDNSHIG 676 (1008)
Q Consensus 599 ~g~L~v~v~~a~~L~~~~~~~~~g~~dpyv~~~~~~--~~~~T~~~~~~~nP~wne~f~~~v~~~~~~l~i~V~d~~~~~ 676 (1008)
+|.|+|+|++|++|+..+ ...+.+||||++.+++ ...+|+++.++.||.|||.|.|.+......|.|+|||++..+
T Consensus 1 ~g~l~v~v~~a~~L~~~~--~~~~~~dpyv~v~~~~~~~~~kT~~~~~~~~P~Wne~~~~~v~~~~~~l~~~v~d~~~~~ 78 (124)
T cd04044 1 IGVLAVTIKSARGLKGSD--IIGGTVDPYVTFSISNRRELARTKVKKDTSNPVWNETKYILVNSLTEPLNLTVYDFNDKR 78 (124)
T ss_pred CeEEEEEEEcccCCCccc--ccCCCCCCeEEEEECCCCcceEeeeecCCCCCcceEEEEEEeCCCCCEEEEEEEecCCCC
Confidence 489999999999999542 2356789999999987 789999999999999999999999866789999999998765
Q ss_pred CCCCCCCceeEEEEEEcccccCCCeEEe-eEeeeecCCCCCccccEEEEEEEEE
Q 001830 677 GSSGSKDVKIGKVRIRISTLETGRVYTH-SYPLLVLHPSGVKKMGELHLAIRFS 729 (1008)
Q Consensus 677 ~~~~~~d~~lG~~~i~l~~l~~~~~~~~-~~~L~~~~~~~~~~~G~i~l~~~f~ 729 (1008)
+|++||++.++|.++..+..... ++++. .++ +..|+|++.++|-
T Consensus 79 -----~d~~iG~~~~~l~~l~~~~~~~~~~~~~~---~~~-k~~G~i~~~l~~~ 123 (124)
T cd04044 79 -----KDKLIGTAEFDLSSLLQNPEQENLTKNLL---RNG-KPVGELNYDLRFF 123 (124)
T ss_pred -----CCceeEEEEEEHHHhccCccccCcchhhh---cCC-ccceEEEEEEEeC
Confidence 89999999999999987766543 45553 223 3459999999873
No 103
>cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.67 E-value=1.5e-15 Score=145.14 Aligned_cols=121 Identities=26% Similarity=0.411 Sum_probs=98.8
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEEEeeeecCCCCCeEeeEEEEEeccC---------CcCeEEEEEEecC
Q 001830 273 YLFVRVVKARDLPSKDVTGSLDPFVEVKVGNYKGITKYYEKKQNPEWNEVFAFSRERI---------QSSVLEVAVKDKD 343 (1008)
Q Consensus 273 ~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~~~~~t~nP~w~e~f~f~~~~~---------~~~~l~i~V~d~d 343 (1008)
+|+|+|++|++|+.+|..|.+||||+|++++++++|+++++|.||.|||+|.|.+..+ ....|.|+|||+|
T Consensus 2 ~l~v~V~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~v~~~t~nP~Wne~~~f~~~~~~~~~~~~~~~~~~l~v~V~d~d 81 (135)
T cd04017 2 QLRAYIYQARDLLAADKSGLSDPFARVSFLNQSQETEVIKETLSPTWDQTLIFDEVELYGSPEEIAQNPPLVVVELFDQD 81 (135)
T ss_pred EEEEEEEEeecCcCCCCCCCCCCEEEEEECCeeeEeeeEcCCCCCccCcEEEEeeeeccCChHHhhcCCCEEEEEEEeCc
Confidence 5899999999999999999999999999999999999999999999999999975322 1257999999999
Q ss_pred -CCCCeeeEEEEE-EccccCCCCCCCCCCccEEEEeecCCCCccceEEEEEEEEec
Q 001830 344 -VVKDDYVGLVRF-DLNEVPTRVPPDSPLAAEWYRLEDRKGEKKKGELMLAVWYGT 397 (1008)
Q Consensus 344 -~~~d~~lG~~~i-~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~G~i~l~~~~~~ 397 (1008)
.++|++||++.+ ++..+... .......+|++|.... ...|+|++++.+.+
T Consensus 82 ~~~~d~~iG~~~i~~~~~~~~~--~~~~~~~~W~~L~~~~--~~~Geil~~~~~~~ 133 (135)
T cd04017 82 SVGKDEFLGRSVAKPLVKLDLE--EDFPPKLQWFPIYKGG--QSAGELLAAFELIE 133 (135)
T ss_pred CCCCCccceEEEeeeeeecccC--CCCCCCceEEEeecCC--CchhheeEEeEEEE
Confidence 678999999997 44443321 1335678999997543 26799999987754
No 104
>cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family. SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas
Probab=99.67 E-value=1.6e-15 Score=143.68 Aligned_cols=125 Identities=22% Similarity=0.388 Sum_probs=103.0
Q ss_pred ceeEEEEEEEeecCCCCCccCCCCCCCCeEEEEEECCEE-EEeeeecCCCCcccccEEEEEeeCCCceEEEEEEeCCCCC
Q 001830 598 SIGVLELGILNADGLHPMKTRDGRGTADTYCVAKYGHKW-VRTRTIINSLSAKYNEQYTWEVYDPATVLTVGVFDNSHIG 676 (1008)
Q Consensus 598 ~~g~L~v~v~~a~~L~~~~~~~~~g~~dpyv~~~~~~~~-~~T~~~~~~~nP~wne~f~~~v~~~~~~l~i~V~d~~~~~ 676 (1008)
....|.|.|++|++|++++ +|||.|.+++.. .||+++.++.||.|||.|.|....+...|+|.|++.+...
T Consensus 9 ~~~sL~v~V~EAk~Lp~~~--------~~Y~~i~Ld~~~vaRT~v~~~~~nP~W~E~F~f~~~~~~~~l~v~v~k~~~~~ 80 (146)
T cd04013 9 TENSLKLWIIEAKGLPPKK--------RYYCELCLDKTLYARTTSKLKTDTLFWGEHFEFSNLPPVSVITVNLYRESDKK 80 (146)
T ss_pred EEEEEEEEEEEccCCCCcC--------CceEEEEECCEEEEEEEEEcCCCCCcceeeEEecCCCcccEEEEEEEEccCcc
Confidence 3468999999999999642 799999999987 5999999999999999999987777788999998654321
Q ss_pred CCCCCCCceeEEEEEEcccccCCCeEEeeEeeeecCCCC-------CccccEEEEEEEEEec
Q 001830 677 GSSGSKDVKIGKVRIRISTLETGRVYTHSYPLLVLHPSG-------VKKMGELHLAIRFSYT 731 (1008)
Q Consensus 677 ~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~-------~~~~G~i~l~~~f~~~ 731 (1008)
+...++.+||++.||+.++..+...+.||||....++. ....+.|++.++|...
T Consensus 81 -~~~~~~~~IG~V~Ip~~~l~~~~~ve~Wfpl~~~~~~~~~~~~~~~~~~~~lrik~rf~~~ 141 (146)
T cd04013 81 -KKKDKSQLIGTVNIPVTDVSSRQFVEKWYPVSTPKGNGKSGGKEGKGESPSIRIKARYQST 141 (146)
T ss_pred -ccccCCcEEEEEEEEHHHhcCCCcccEEEEeecCCCCCccccccccCCCCEEEEEEEEEEe
Confidence 01226899999999999999999999999999766543 3345899999998644
No 105
>cd04018 C2C_Ferlin C2 domain third repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.67 E-value=3.6e-16 Score=150.00 Aligned_cols=105 Identities=20% Similarity=0.278 Sum_probs=87.0
Q ss_pred eEEEEEEEeeCCCCCCCC--------------CCCCcEEEEEECCeeeccccCCCCCCCeeeeEEEEEecCCCCCCCceE
Q 001830 5 KLGVEVVSAYELMPKDGQ--------------GSSNAFVELHFDGQKFRTTTKEKDLTPVWNESFYFNISDPHNLSNLAL 70 (1008)
Q Consensus 5 ~L~V~v~~a~~L~~~d~~--------------g~~dPyv~v~~~~~~~~T~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l 70 (1008)
.|.|+|++|++|+++|.. +.+||||+|.+++++.+|+++++++||+|||+|.|.+..+. ....|
T Consensus 1 ~~~V~V~~A~dLp~~d~~~~~~~~~~~~~~~~~~~DPYV~V~~~g~~~kT~v~~~t~nPvWNE~f~f~v~~p~--~~~~l 78 (151)
T cd04018 1 RFIFKIYRAEDLPQMDSGIMANVKKAFLGEKKELVDPYVEVSFAGQKVKTSVKKNSYNPEWNEQIVFPEMFPP--LCERI 78 (151)
T ss_pred CeEEEEEEeCCCCccChhhhccceeccccCCCCCcCcEEEEEECCEeeecceEcCCCCCCcceEEEEEeeCCC--cCCEE
Confidence 478999999999998854 37999999999999999999999999999999999975332 23589
Q ss_pred EEEEEeCCCCCCCCCeeEEEEEeCcccCCCCCc------eeEEEeccc
Q 001830 71 DAYVYNHNRTTNSKSFLGKVRLTGTSFVPYSDA------VVLHYPLEK 112 (1008)
Q Consensus 71 ~~~V~d~~~~~~~d~~lG~~~i~l~~l~~~~~~------~~~~~~L~~ 112 (1008)
.|+|||+|..+ +|++||++.+++.++...+.. ...|+.|-.
T Consensus 79 ~~~v~D~d~~~-~dd~iG~~~l~l~~l~~~~~~~~lp~~~p~W~~lyg 125 (151)
T cd04018 79 KIQIRDWDRVG-NDDVIGTHFIDLSKISNSGDEGFLPTFGPSFVNLYG 125 (151)
T ss_pred EEEEEECCCCC-CCCEEEEEEEeHHHhccCCccccCCccCceEEEeec
Confidence 99999998875 899999999999998665432 245666643
No 106
>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl
Probab=99.67 E-value=3.9e-16 Score=147.82 Aligned_cols=92 Identities=25% Similarity=0.382 Sum_probs=80.5
Q ss_pred CceEEEEEEEeeCCCCCCCCCCCCcEEEEEECC-----eeeccccCCCCCCCeeeeEEEEEecCCCCCCCceEEEEEEeC
Q 001830 3 HLKLGVEVVSAYELMPKDGQGSSNAFVELHFDG-----QKFRTTTKEKDLTPVWNESFYFNISDPHNLSNLALDAYVYNH 77 (1008)
Q Consensus 3 ~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~-----~~~~T~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~~~V~d~ 77 (1008)
...|.|+|++|+||+..|..|.+||||+|++.. .+++|+++++|+||+|||+|.|.+.. +.+....|.|.|||+
T Consensus 14 ~~~L~V~Vi~A~nL~~~~~~g~~DpyVkv~l~~~~~~~~k~kT~v~k~t~nP~~nE~f~F~v~~-~~l~~~~l~~~V~~~ 92 (136)
T cd08406 14 AERLTVVVVKARNLVWDNGKTTADPFVKVYLLQDGRKISKKKTSVKRDDTNPIFNEAMIFSVPA-IVLQDLSLRVTVAES 92 (136)
T ss_pred CCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCccccccCCccccCCCCCeeceeEEEECCH-HHhCCcEEEEEEEeC
Confidence 468999999999999999999999999999942 25789999999999999999999864 456778999999999
Q ss_pred CCCCCCCCeeEEEEEeCcc
Q 001830 78 NRTTNSKSFLGKVRLTGTS 96 (1008)
Q Consensus 78 ~~~~~~d~~lG~~~i~l~~ 96 (1008)
|.++ ++++||++.|+...
T Consensus 93 d~~~-~~~~iG~v~lg~~~ 110 (136)
T cd08406 93 TEDG-KTPNVGHVIIGPAA 110 (136)
T ss_pred CCCC-CCCeeEEEEECCCC
Confidence 8876 78999999998654
No 107
>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins. SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such
Probab=99.67 E-value=3.8e-16 Score=147.65 Aligned_cols=118 Identities=23% Similarity=0.384 Sum_probs=97.4
Q ss_pred eEEEEEEEeeCCCCCCCCCCCCcEEEEEECC-eeeccccCC-CCCCCeeeeEEEEEecCCCC-CCCceEEEEEEeCCCCC
Q 001830 5 KLGVEVVSAYELMPKDGQGSSNAFVELHFDG-QKFRTTTKE-KDLTPVWNESFYFNISDPHN-LSNLALDAYVYNHNRTT 81 (1008)
Q Consensus 5 ~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~-~~~~T~~~~-~t~nP~Wne~f~f~v~~~~~-~~~~~l~~~V~d~~~~~ 81 (1008)
.|.|+|++|++|+..+..+.+||||+|++++ ++++|+++. ++.||+|||+|.|.+..... .....|.|+|||++.++
T Consensus 1 ~L~V~V~sA~~L~~~~~~~~~dpYv~v~~~~~~~~~T~~~~~~~~~P~Wne~f~f~v~~~~~~~~~~~l~~~v~d~~~~~ 80 (125)
T cd04051 1 TLEITIISAEDLKNVNLFGKMKVYAVVWIDPSHKQSTPVDRDGGTNPTWNETLRFPLDERLLQQGRLALTIEVYCERPSL 80 (125)
T ss_pred CEEEEEEEcccCCCCCcccCCceEEEEEECCCcccccccccCCCCCCCCCCEEEEEcChHhcccCccEEEEEEEECCCCC
Confidence 4899999999999999889999999999998 789999875 58999999999999864310 12458999999997765
Q ss_pred CCCCeeEEEEEeCcccCCCCCc----eeEEEecccCCCCcccceEEEE
Q 001830 82 NSKSFLGKVRLTGTSFVPYSDA----VVLHYPLEKRSIFSRVKGELGL 125 (1008)
Q Consensus 82 ~~d~~lG~~~i~l~~l~~~~~~----~~~~~~L~~~~~~~~~~G~i~~ 125 (1008)
+|++||++.+++.++...... ...||+|.+++ ++..|.|++
T Consensus 81 -~~~~lG~~~i~l~~l~~~~~~~~~~~~~~~~l~~~~--g~~~G~~~~ 125 (125)
T cd04051 81 -GDKLIGEVRVPLKDLLDGASPAGELRFLSYQLRRPS--GKPQGVLNF 125 (125)
T ss_pred -CCCcEEEEEEEHHHhhcccCCCCcceeEEEEeECCC--CCcCeEEeC
Confidence 789999999999998665442 46799999764 467888763
No 108
>cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD). PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM
Probab=99.66 E-value=6e-16 Score=140.75 Aligned_cols=96 Identities=20% Similarity=0.319 Sum_probs=83.4
Q ss_pred eEEEEEEEeecCCCCCccCC-CCCCCCeEEEEEECCEEEEeeeecCCCCcccccEEEEEeeCC--CceEEEEEEeCCCCC
Q 001830 600 GVLELGILNADGLHPMKTRD-GRGTADTYCVAKYGHKWVRTRTIINSLSAKYNEQYTWEVYDP--ATVLTVGVFDNSHIG 676 (1008)
Q Consensus 600 g~L~v~v~~a~~L~~~~~~~-~~g~~dpyv~~~~~~~~~~T~~~~~~~nP~wne~f~~~v~~~--~~~l~i~V~d~~~~~ 676 (1008)
|.|.|+|++|++|++.+... ..+.+||||++.+++..+||++++++.||+|||.|.|.+.+. ...|.|+|||++.++
T Consensus 1 g~l~v~v~~A~~L~~~~~~~~~~~~~DPYv~v~~~~~~~kT~v~~~t~nPvWne~f~f~v~~~~~~~~L~~~V~D~d~~~ 80 (108)
T cd04039 1 GVVFMEIKSITDLPPLKNMTRTGFDMDPFVIISFGRRVFRTSWRRHTLNPVFNERLAFEVYPHEKNFDIQFKVLDKDKFS 80 (108)
T ss_pred CEEEEEEEeeeCCCCccccCCCCCccCceEEEEECCEeEeeeeecCCCCCcccceEEEEEeCccCCCEEEEEEEECCCCC
Confidence 78999999999999875321 224589999999999999999999999999999999998754 347999999999876
Q ss_pred CCCCCCCceeEEEEEEcccccCCC
Q 001830 677 GSSGSKDVKIGKVRIRISTLETGR 700 (1008)
Q Consensus 677 ~~~~~~d~~lG~~~i~l~~l~~~~ 700 (1008)
+|++||++.++|++|..+.
T Consensus 81 -----~dd~IG~~~l~L~~l~~~~ 99 (108)
T cd04039 81 -----FNDYVATGSLSVQELLNAA 99 (108)
T ss_pred -----CCcceEEEEEEHHHHHhhC
Confidence 8999999999999997664
No 109
>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.66 E-value=9.7e-17 Score=174.05 Aligned_cols=120 Identities=31% Similarity=0.517 Sum_probs=106.8
Q ss_pred CceEEEEEEEeeCCCCCCCCCCCCcEEEEEECCeeeccccCCCCCCCeeeeEEEEEecCCCCCCCceEEEEEEeCCCC--
Q 001830 3 HLKLGVEVVSAYELMPKDGQGSSNAFVELHFDGQKFRTTTKEKDLTPVWNESFYFNISDPHNLSNLALDAYVYNHNRT-- 80 (1008)
Q Consensus 3 ~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~~~V~d~~~~-- 80 (1008)
+..+.++|++|+||.++|..|.+||||.+.+++.+.+|+++...+||+|||.|.|.+.+..+ .|+++|||.|..
T Consensus 294 sakitltvlcaqgl~akdktg~sdpyvt~qv~ktkrrtrti~~~lnpvw~ekfhfechnstd----rikvrvwded~dlk 369 (1283)
T KOG1011|consen 294 SAKITLTVLCAQGLIAKDKTGKSDPYVTAQVGKTKRRTRTIHQELNPVWNEKFHFECHNSTD----RIKVRVWDEDNDLK 369 (1283)
T ss_pred ceeeEEeeeecccceecccCCCCCCcEEEeecccchhhHhhhhccchhhhhheeeeecCCCc----eeEEEEecCcccHH
Confidence 36789999999999999999999999999999999999999999999999999999987554 899999999854
Q ss_pred --------CCCCCeeEEEEEeCcccCCCCCceeEEEecccCCCCcccceEEEEEEEe
Q 001830 81 --------TNSKSFLGKVRLTGTSFVPYSDAVVLHYPLEKRSIFSRVKGELGLKVFV 129 (1008)
Q Consensus 81 --------~~~d~~lG~~~i~l~~l~~~~~~~~~~~~L~~~~~~~~~~G~i~~~~~~ 129 (1008)
..+|||||+..|.+..+ +..+..||.|+++.+++.++|.|++.|.+
T Consensus 370 sklrqkl~resddflgqtvievrtl---sgemdvwynlekrtdksavsgairlhisv 423 (1283)
T KOG1011|consen 370 SKLRQKLTRESDDFLGQTVIEVRTL---SGEMDVWYNLEKRTDKSAVSGAIRLHISV 423 (1283)
T ss_pred HHHHHHhhhcccccccceeEEEEec---ccchhhhcchhhccchhhccceEEEEEEE
Confidence 34789999999996665 45567799999999999999999987754
No 110
>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon. A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=99.66 E-value=1.6e-15 Score=144.65 Aligned_cols=118 Identities=25% Similarity=0.316 Sum_probs=99.6
Q ss_pred eeEEEEEEEeecCCCCCccC-------CCCCCCCeEEEEEECCEE-EEeeeecCCCCcccccEEEEEeeCCCceEEEEEE
Q 001830 599 IGVLELGILNADGLHPMKTR-------DGRGTADTYCVAKYGHKW-VRTRTIINSLSAKYNEQYTWEVYDPATVLTVGVF 670 (1008)
Q Consensus 599 ~g~L~v~v~~a~~L~~~~~~-------~~~g~~dpyv~~~~~~~~-~~T~~~~~~~nP~wne~f~~~v~~~~~~l~i~V~ 670 (1008)
.|.|+|+|++|++|++.+.. ...|.+||||++.++++. .+|++++++.||.|||+|.|.+. ....|.|.||
T Consensus 3 ~g~l~V~v~~a~~L~~~d~~~~~~~~~~~~g~~dpyv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~-~~~~l~~~v~ 81 (132)
T cd04014 3 TGTLKIKICEAVDLKPTDWSTRHAVPKKGSQLLDPYVSIDVDDTHIGKTSTKPKTNSPVWNEEFTTEVH-NGRNLELTVF 81 (132)
T ss_pred ceEEEEEEEEecCCCCCCchhhhcccccCccCcCcEEEEEECCEEEeEEeEcCCCCCCCcceeEEEEcC-CCCEEEEEEE
Confidence 48999999999999976421 013678999999999866 59999999999999999999996 4568999999
Q ss_pred eCCCCCCCCCCCCceeEEEEEEcccccC--CCeEEeeEeeeecCCCCCccccEEEEEEEEEe
Q 001830 671 DNSHIGGSSGSKDVKIGKVRIRISTLET--GRVYTHSYPLLVLHPSGVKKMGELHLAIRFSY 730 (1008)
Q Consensus 671 d~~~~~~~~~~~d~~lG~~~i~l~~l~~--~~~~~~~~~L~~~~~~~~~~~G~i~l~~~f~~ 730 (1008)
|++.++ ++++||++.++|+++.. +...+.|++|. +.|+|++++++..
T Consensus 82 d~~~~~-----~~~~iG~~~i~l~~l~~~~~~~~~~w~~L~--------~~G~l~l~~~~~~ 130 (132)
T cd04014 82 HDAAIG-----PDDFVANCTISFEDLIQRGSGSFDLWVDLE--------PQGKLHVKIELKG 130 (132)
T ss_pred eCCCCC-----CCceEEEEEEEhHHhcccCCCcccEEEEcc--------CCcEEEEEEEEec
Confidence 998766 78999999999999876 56678999994 3499999988753
No 111
>cd04011 C2B_Ferlin C2 domain second repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.66 E-value=9e-16 Score=141.49 Aligned_cols=103 Identities=30% Similarity=0.498 Sum_probs=90.3
Q ss_pred eeEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEEEeeeecCCCCCeEeeEEEEEeccC----CcCeEEEEEEecC-CC
Q 001830 271 MRYLFVRVVKARDLPSKDVTGSLDPFVEVKVGNYKGITKYYEKKQNPEWNEVFAFSRERI----QSSVLEVAVKDKD-VV 345 (1008)
Q Consensus 271 ~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~~~~~t~nP~w~e~f~f~~~~~----~~~~l~i~V~d~d-~~ 345 (1008)
...|+|+|++|++|. .|.+||||++++++++++|++++++.||.|||+|.|.+... ....|.|+|||++ ++
T Consensus 3 ~~~l~V~v~~a~~L~----~~~~dpyv~v~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~l~~~~l~i~V~d~~~~~ 78 (111)
T cd04011 3 DFQVRVRVIEARQLV----GGNIDPVVKVEVGGQKKYTSVKKGTNCPFYNEYFFFNFHESPDELFDKIIKISVYDSRSLR 78 (111)
T ss_pred cEEEEEEEEEcccCC----CCCCCCEEEEEECCEeeeeeEEeccCCCccccEEEEecCCCHHHHhcCeEEEEEEcCcccc
Confidence 357999999999998 57899999999999999999999999999999999987432 3468999999998 67
Q ss_pred CCeeeEEEEEEccccCCCCCCCCCCccEEEEeec
Q 001830 346 KDDYVGLVRFDLNEVPTRVPPDSPLAAEWYRLED 379 (1008)
Q Consensus 346 ~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~ 379 (1008)
++++||++.++|.++... +++.....|++|.+
T Consensus 79 ~~~~iG~~~i~l~~v~~~--~~~~~~~~w~~L~~ 110 (111)
T cd04011 79 SDTLIGSFKLDVGTVYDQ--PDHAFLRKWLLLTD 110 (111)
T ss_pred cCCccEEEEECCccccCC--CCCcceEEEEEeeC
Confidence 899999999999999764 44577899999975
No 112
>cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev
Probab=99.66 E-value=1.3e-15 Score=143.95 Aligned_cols=120 Identities=26% Similarity=0.370 Sum_probs=97.7
Q ss_pred EEEEEEEeecCCCCCccCCCCCCCCeEEEEEECCEEEEeeeecCCCCcccccEEEEEeeCCCceEEEEEEeCCCCCCC--
Q 001830 601 VLELGILNADGLHPMKTRDGRGTADTYCVAKYGHKWVRTRTIINSLSAKYNEQYTWEVYDPATVLTVGVFDNSHIGGS-- 678 (1008)
Q Consensus 601 ~L~v~v~~a~~L~~~~~~~~~g~~dpyv~~~~~~~~~~T~~~~~~~nP~wne~f~~~v~~~~~~l~i~V~d~~~~~~~-- 678 (1008)
.|+|+|++|++|+.. +..|.+||||++.+++...+|++++++.||.|||.|.|.+..+...|.|+|||++.....
T Consensus 2 ~L~V~vi~a~~L~~~---d~~g~~DPyv~v~~~~~~~kT~~v~~t~~P~Wne~f~f~~~~~~~~l~i~v~d~d~~~~~~~ 78 (127)
T cd04027 2 KISITVVCAQGLIAK---DKTGTSDPYVTVQVGKTKKRTKTIPQNLNPVWNEKFHFECHNSSDRIKVRVWDEDDDIKSRL 78 (127)
T ss_pred eEEEEEEECcCCcCC---CCCCCcCcEEEEEECCEeeecceecCCCCCccceEEEEEecCCCCEEEEEEEECCCCccccc
Confidence 689999999999965 457889999999999999999999999999999999999977777899999999853100
Q ss_pred ----CCCCCceeEEEEEEcccccCCCeEEeeEeeeecCCCCCccccEEEEEE
Q 001830 679 ----SGSKDVKIGKVRIRISTLETGRVYTHSYPLLVLHPSGVKKMGELHLAI 726 (1008)
Q Consensus 679 ----~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~G~i~l~~ 726 (1008)
...++++||++.+++.++... ...||+|........ ..|+|.|.+
T Consensus 79 ~~~~~~~~~~~iG~~~i~l~~~~~~--~~~w~~L~~~~~~~~-~~G~i~~~~ 127 (127)
T cd04027 79 KQKFTRESDDFLGQTIIEVRTLSGE--MDVWYNLEKRTDKSA-VSGAIRLHI 127 (127)
T ss_pred ceeccccCCCcceEEEEEhHHccCC--CCeEEECccCCCCCc-EeEEEEEEC
Confidence 013699999999999988644 368999986543333 369988753
No 113
>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone. The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a
Probab=99.66 E-value=5.2e-16 Score=142.64 Aligned_cols=101 Identities=24% Similarity=0.379 Sum_probs=89.2
Q ss_pred EEEEEEeecCCCCCccCCCCCCCCeEEEEEECCEEEEeeeecCCCCccc-ccEEEEEeeCC---CceEEEEEEeCCCCCC
Q 001830 602 LELGILNADGLHPMKTRDGRGTADTYCVAKYGHKWVRTRTIINSLSAKY-NEQYTWEVYDP---ATVLTVGVFDNSHIGG 677 (1008)
Q Consensus 602 L~v~v~~a~~L~~~~~~~~~g~~dpyv~~~~~~~~~~T~~~~~~~nP~w-ne~f~~~v~~~---~~~l~i~V~d~~~~~~ 677 (1008)
|.|+|++|+||++++ ...|.+||||++.+++..+||++++++.||.| ||.|.|.+... ...|.|+|||++.++
T Consensus 1 l~V~v~~a~~L~~~d--~~~~~~Dpyv~v~~~~~~~kT~v~~~~~nP~W~ne~f~f~i~~~~l~~~~l~i~V~d~d~~~- 77 (110)
T cd08688 1 LKVRVVAARDLPVMD--RSSDLTDAFVEVKFGSTTYKTDVVKKSLNPVWNSEWFRFEVDDEELQDEPLQIRVMDHDTYS- 77 (110)
T ss_pred CEEEEEEEECCCccc--cCCCCCCceEEEEECCeeEecceecCCCCCcccCcEEEEEcChHHcCCCeEEEEEEeCCCCC-
Confidence 589999999999764 13678999999999999999999999999999 99999999764 368999999999876
Q ss_pred CCCCCCceeEEEEEEcccccC---CCeEEeeEeee
Q 001830 678 SSGSKDVKIGKVRIRISTLET---GRVYTHSYPLL 709 (1008)
Q Consensus 678 ~~~~~d~~lG~~~i~l~~l~~---~~~~~~~~~L~ 709 (1008)
++++||++.++++++.. +.....||+|.
T Consensus 78 ----~~~~iG~~~~~l~~l~~~~~~~~~~~w~~l~ 108 (110)
T cd08688 78 ----ANDAIGKVYIDLNPLLLKDSVSQISGWFPIY 108 (110)
T ss_pred ----CCCceEEEEEeHHHhcccCCccccCCeEEcc
Confidence 89999999999999966 45678999996
No 114
>PF11696 DUF3292: Protein of unknown function (DUF3292); InterPro: IPR021709 This eukaryotic family of proteins has no known function.
Probab=99.65 E-value=1.4e-15 Score=171.08 Aligned_cols=213 Identities=21% Similarity=0.302 Sum_probs=150.7
Q ss_pred cCCCCccchhhhHHHHHHHHH-HHhHHHHHHHHhhccccccCchhHHHHHHHHHHHHHhcchhHHHHHHHHHHHHhh---
Q 001830 791 DVDSHLWSMRRSKANFFRLMS-VFSGLFAAGKWFGEVCMWRNPITTVLVHILFVMLVYFPELILPTVFLYMFMIGLW--- 866 (1008)
Q Consensus 791 ~~~~~~fs~~~~~~n~~rl~~-~~~~~~~~~~~i~~l~~W~~p~~t~~~~~~~~~~~~~~~l~lp~~~l~l~~~~~~--- 866 (1008)
-++...||..++++|++||+. ++-.+..+.+.|.+|.+|++|++|..++++|+++ |+.++++|++++.++.++++
T Consensus 82 ~a~~e~FspdkLRa~lERlY~tv~v~~~~~~khi~RLrSW~eprRT~~fc~vYf~a-W~~dll~p~~~~~L~~li~~P~~ 160 (642)
T PF11696_consen 82 IAEDEEFSPDKLRANLERLYMTVVVGLAAFIKHIARLRSWREPRRTAAFCAVYFIA-WLLDLLVPAFFAFLIALILSPPA 160 (642)
T ss_pred ccccccCChHHHHHHhHhheeehHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhcCccc
Confidence 367889999999999999999 7788999999999999999999999999999988 77799999998888777773
Q ss_pred -ccccCCCCCCCCCCccc---------------------------------------------ccccCCCC---CCCCCC
Q 001830 867 -NYRYRPRYPPHMNTRIS---------------------------------------------YADAVHPD---ELDEEF 897 (1008)
Q Consensus 867 -~~~~~~~~~~~~~~~~~---------------------------------------------~~~~~~~~---~~~~e~ 897 (1008)
.++|+|..++.++..-+ .+...+++ +.+++.
T Consensus 161 r~~lFPpap~alvd~~tgg~qkP~aGvLgs~dS~TGAPE~~KGEAvEqEAsNfV~siasvav~saaGK~~q~~p~~~~~~ 240 (642)
T PF11696_consen 161 RSILFPPAPPALVDSKTGGVQKPKAGVLGSDDSVTGAPENHKGEAVEQEASNFVNSIASVAVSSAAGKHPQGDPDDDPEE 240 (642)
T ss_pred ccccCCCCCcccccCCCCCccccccccccccccccCCCccccchHHHHHHHHHHHHHHHHHHHhhccCCCCCCcccCCcc
Confidence 67787766654442210 00111110 111110
Q ss_pred CCC----------------------CCCCChhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhccccCChh--------
Q 001830 898 DTF----------------------PTTRSPDIVRMRYDRLRSVAGRIQTVVGDVATQGERIQALLSWRDPR-------- 947 (1008)
Q Consensus 898 ~~~----------------------~~~~~~~~~~~~~~~l~~~~~~vq~~l~~~a~~~e~~~~l~~w~~p~-------- 947 (1008)
+.. ....+++.-.|+ .++.+.+..+|+.|++++|.+||+-|+|+.+.|+
T Consensus 241 ~~~pd~~~v~~~~adak~~a~g~~~~~~~DkTk~Pm~-~~v~~~~~p~mh~l~di~Dt~ERfaNaLSPTpPFp~~~~RlR 319 (642)
T PF11696_consen 241 DSEPDPTDVATKAADAKDKAAGEKPKPSHDKTKQPMK-EAVWKKMRPIMHMLGDITDTWERFANALSPTPPFPRHTPRLR 319 (642)
T ss_pred CCCCChhhhhHhhhhhhhhccCCCCCCccchhhchHH-HHHHHhhhhHHHHHhhHHHHHHHHhhccCCCCCCCCccHHHH
Confidence 110 011223444454 6688899999999999999999999999999998
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHhhhhhhhcCCC-------CCCCCCCc------hhhhhhcCCCCcC
Q 001830 948 AAAIFVIFCLVAAVVLYVTPFQLLALLAGCYIMRHPR-------FRHKTPSA------PINFFRRLPARTD 1005 (1008)
Q Consensus 948 ~t~~~~~~~~~~~~~~~~iP~r~i~l~~g~~~~~~P~-------~~~~~~~~------~~~~~~r~ps~~~ 1005 (1008)
+..+++.+++++.++..++-.|.+-|++|+.++-.|- +.+++|+. =.-.|+.||||+-
T Consensus 320 La~~l~p~~l~Sl~~ssy~~~K~~tF~~Gf~FFGdPiI~r~~~~Lnr~~P~W~k~leLrntlLkGVPTNAQ 390 (642)
T PF11696_consen 320 LAAILAPLLLASLFVSSYMFVKGTTFGFGFGFFGDPIITRGIDYLNRKYPNWQKLLELRNTLLKGVPTNAQ 390 (642)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHhhhHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHhccCCchHH
Confidence 3345555666666666667788888888888655553 22344541 2235788898864
No 115
>cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP). ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i
Probab=99.65 E-value=1.4e-15 Score=145.49 Aligned_cols=90 Identities=28% Similarity=0.448 Sum_probs=81.6
Q ss_pred ceEEEEEEEeeCCCCCCCCCCCCcEEEEEECCeeeccccCCCCCCCeeeeEEEEEecCCCCCCCceEEEEEEeCCCCCCC
Q 001830 4 LKLGVEVVSAYELMPKDGQGSSNAFVELHFDGQKFRTTTKEKDLTPVWNESFYFNISDPHNLSNLALDAYVYNHNRTTNS 83 (1008)
Q Consensus 4 ~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~~~V~d~~~~~~~ 83 (1008)
+.|.|+|++|+||+.+|. +.+||||++++++++++|+++++++||+|||+|.|.+.++ ...|.|+|||++.++ +
T Consensus 2 G~L~V~Vi~a~nL~~~d~-~~sDPYV~v~~g~~~~kT~vvk~t~nP~WnE~f~f~i~~~----~~~l~~~V~D~d~~~-~ 75 (145)
T cd04038 2 GLLKVRVVRGTNLAVRDF-TSSDPYVVLTLGNQKVKTRVIKKNLNPVWNEELTLSVPNP----MAPLKLEVFDKDTFS-K 75 (145)
T ss_pred eEEEEEEEeeECCCCCCC-CCcCcEEEEEECCEEEEeeeEcCCCCCeecccEEEEecCC----CCEEEEEEEECCCCC-C
Confidence 579999999999999887 8999999999999999999999999999999999998654 358999999998876 7
Q ss_pred CCeeEEEEEeCcccCC
Q 001830 84 KSFLGKVRLTGTSFVP 99 (1008)
Q Consensus 84 d~~lG~~~i~l~~l~~ 99 (1008)
|++||++.+++..+..
T Consensus 76 dd~iG~a~i~l~~l~~ 91 (145)
T cd04038 76 DDSMGEAEIDLEPLVE 91 (145)
T ss_pred CCEEEEEEEEHHHhhh
Confidence 8999999999888643
No 116
>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.65 E-value=6.8e-16 Score=146.09 Aligned_cols=111 Identities=36% Similarity=0.530 Sum_probs=91.9
Q ss_pred cccccccCcCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eEEEeeeecCCCCCeEeeEEEEEecc---CC
Q 001830 260 LRASTYDLVEQMRYLFVRVVKARDLPSKDVTGSLDPFVEVKVGN-----YKGITKYYEKKQNPEWNEVFAFSRER---IQ 331 (1008)
Q Consensus 260 ~~~~~~~~~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~-----~~~kT~~~~~t~nP~w~e~f~f~~~~---~~ 331 (1008)
.+++.|+. ..+.|.|+|++|+||...+..+.+||||++++.+ .+++|++++++.||+|||+|.|.+.. +.
T Consensus 6 ~~~l~~~~--~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~l~ 83 (125)
T cd04031 6 QIQLWYDK--VTSQLIVTVLQARDLPPRDDGSLRNPYVKVYLLPDRSEKSKRRTKTVKKTLNPEWNQTFEYSNVRRETLK 83 (125)
T ss_pred EEEEEEeC--CCCEEEEEEEEecCCCCcCCCCCCCCEEEEEEccCCCccccccccccCCCCCCccccEEEEcccCHHHhC
Confidence 44556653 4578999999999999998889999999999975 46789999999999999999998532 34
Q ss_pred cCeEEEEEEecC-CCCCeeeEEEEEEccccCCCCCCCCCCccEEEEee
Q 001830 332 SSVLEVAVKDKD-VVKDDYVGLVRFDLNEVPTRVPPDSPLAAEWYRLE 378 (1008)
Q Consensus 332 ~~~l~i~V~d~d-~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~ 378 (1008)
...|.|+|||++ .+++++||++.++|.+... .....||+|+
T Consensus 84 ~~~l~~~V~d~~~~~~~~~iG~~~i~l~~~~~------~~~~~W~~L~ 125 (125)
T cd04031 84 ERTLEVTVWDYDRDGENDFLGEVVIDLADALL------DDEPHWYPLQ 125 (125)
T ss_pred CCEEEEEEEeCCCCCCCcEeeEEEEecccccc------cCCcceEECc
Confidence 578999999998 6789999999999998432 2246899984
No 117
>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy
Probab=99.65 E-value=5.1e-16 Score=146.73 Aligned_cols=92 Identities=22% Similarity=0.290 Sum_probs=79.6
Q ss_pred CceEEEEEEEeeCCCCCCC--CCCCCcEEEEEECC-----eeeccccCCCCCCCeeeeEEEEEecCCCCCCCceEEEEEE
Q 001830 3 HLKLGVEVVSAYELMPKDG--QGSSNAFVELHFDG-----QKFRTTTKEKDLTPVWNESFYFNISDPHNLSNLALDAYVY 75 (1008)
Q Consensus 3 ~~~L~V~v~~a~~L~~~d~--~g~~dPyv~v~~~~-----~~~~T~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~~~V~ 75 (1008)
.++|.|+|++|+||+.+|. .+.+||||+|++.. .+++|+++++++||+|||+|.|.+.. +.+....|.|+||
T Consensus 14 ~~~L~V~V~karnL~~~d~~~~~~~DpYVKv~l~~~~~k~~kkkT~v~k~t~nPvfNE~f~F~v~~-~~L~~~~L~~~V~ 92 (138)
T cd08407 14 ANRLLVVVIKAKNLHSDQLKLLLGIDVSVKVTLKHQNAKLKKKQTKRAKHKINPVWNEMIMFELPS-ELLAASSVELEVL 92 (138)
T ss_pred CCeEEEEEEEecCCCccccCCCCCCCeEEEEEEEcCCcccceeccceeeCCCCCccccEEEEECCH-HHhCccEEEEEEE
Confidence 4789999999999999983 35699999999853 24789999999999999999999864 4566778999999
Q ss_pred eCCCCCCCCCeeEEEEEeCcc
Q 001830 76 NHNRTTNSKSFLGKVRLTGTS 96 (1008)
Q Consensus 76 d~~~~~~~d~~lG~~~i~l~~ 96 (1008)
|+|.++ ++++||++.+++..
T Consensus 93 d~d~~~-~~d~iG~v~lg~~~ 112 (138)
T cd08407 93 NQDSPG-QSLPLGRCSLGLHT 112 (138)
T ss_pred eCCCCc-CcceeceEEecCcC
Confidence 998876 78999999999865
No 118
>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into
Probab=99.65 E-value=8e-16 Score=145.15 Aligned_cols=105 Identities=28% Similarity=0.399 Sum_probs=88.4
Q ss_pred CceEEEEEEEeeCCCCCC-CCCCCCcEEEEEECC-----eeeccccCCCCCCCeeeeEEEEEecCCCCCCCceEEEEEEe
Q 001830 3 HLKLGVEVVSAYELMPKD-GQGSSNAFVELHFDG-----QKFRTTTKEKDLTPVWNESFYFNISDPHNLSNLALDAYVYN 76 (1008)
Q Consensus 3 ~~~L~V~v~~a~~L~~~d-~~g~~dPyv~v~~~~-----~~~~T~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~~~V~d 76 (1008)
.+.|.|+|++|+||+..+ ..|.+||||+|++.. .+++|+++++++||+|||+|.|.+.. .++....|.|.|||
T Consensus 13 ~~~L~V~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~wne~f~f~i~~-~~l~~~~l~i~v~d 91 (123)
T cd08521 13 TGSLEVHIKECRNLAYADEKKKRSNPYVKVYLLPDKSKQSKRKTSVKKNTTNPVFNETLKYHISK-SQLETRTLQLSVWH 91 (123)
T ss_pred CCEEEEEEEEecCCCCcCCCCCCCCcEEEEEEecCCCcCceeeccccCCCCCCcccceEEEeCCH-HHhCCCEEEEEEEe
Confidence 478999999999999998 788999999998841 35899999999999999999999753 33445689999999
Q ss_pred CCCCCCCCCeeEEEEEeCcccCCCCCceeEEEec
Q 001830 77 HNRTTNSKSFLGKVRLTGTSFVPYSDAVVLHYPL 110 (1008)
Q Consensus 77 ~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~L 110 (1008)
++.++ ++++||++.++|.++... .....||+|
T Consensus 92 ~~~~~-~~~~iG~~~i~l~~l~~~-~~~~~w~~l 123 (123)
T cd08521 92 HDRFG-RNTFLGEVEIPLDSWDLD-SQQSEWYPL 123 (123)
T ss_pred CCCCc-CCceeeEEEEeccccccc-CCCccEEEC
Confidence 98775 789999999999998643 345669987
No 119
>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.65 E-value=2.9e-15 Score=141.89 Aligned_cols=115 Identities=27% Similarity=0.409 Sum_probs=100.3
Q ss_pred EEEeecCCCCCCCCCCCcEEEEEECCeEEEeeeecCCCCCeEeeEEEEEeccC--CcCeEEEEEEecC-CCCCeeeEEEE
Q 001830 278 VVKARDLPSKDVTGSLDPFVEVKVGNYKGITKYYEKKQNPEWNEVFAFSRERI--QSSVLEVAVKDKD-VVKDDYVGLVR 354 (1008)
Q Consensus 278 v~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~~~~~t~nP~w~e~f~f~~~~~--~~~~l~i~V~d~d-~~~d~~lG~~~ 354 (1008)
|++|++|+. ..|.+||||++++++.+++|++++++.||+|||+|.|.+... ....|.|+|||++ .+++++||++.
T Consensus 2 vi~a~~L~~--~~g~~Dpyv~v~~~~~~~kT~v~~~~~nP~Wne~f~f~~~~~~~~~~~l~~~v~d~~~~~~d~~iG~~~ 79 (127)
T cd08373 2 VVSLKNLPG--LKGKGDRIAKVTFRGVKKKTRVLENELNPVWNETFEWPLAGSPDPDESLEIVVKDYEKVGRNRLIGSAT 79 (127)
T ss_pred eEEeeCCcc--cCCCCCCEEEEEECCEeeecceeCCCcCCcccceEEEEeCCCcCCCCEEEEEEEECCCCCCCceEEEEE
Confidence 678999988 678899999999999999999999999999999999998653 4678999999998 66899999999
Q ss_pred EEccccCCCCCCCCCCccEEEEeecCCCCccceEEEEEEEEeccC
Q 001830 355 FDLNEVPTRVPPDSPLAAEWYRLEDRKGEKKKGELMLAVWYGTQA 399 (1008)
Q Consensus 355 i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~G~i~l~~~~~~~~ 399 (1008)
+++.++..+ .....|++|.+..+....|+|+++++|.+..
T Consensus 80 ~~l~~l~~~-----~~~~~~~~L~~~~~~~~~~~l~l~~~~~~~~ 119 (127)
T cd08373 80 VSLQDLVSE-----GLLEVTEPLLDSNGRPTGATISLEVSYQPPD 119 (127)
T ss_pred EEhhHcccC-----CceEEEEeCcCCCCCcccEEEEEEEEEeCCC
Confidence 999999864 4467899998776655679999999997653
No 120
>cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin
Probab=99.65 E-value=8.6e-16 Score=146.51 Aligned_cols=106 Identities=25% Similarity=0.441 Sum_probs=90.7
Q ss_pred EEEEEEEeeCCCCCCCCCCCCcEEEEEEC----CeeeccccCCCCCCCeeeeEEEEEecCC------------CCCCCce
Q 001830 6 LGVEVVSAYELMPKDGQGSSNAFVELHFD----GQKFRTTTKEKDLTPVWNESFYFNISDP------------HNLSNLA 69 (1008)
Q Consensus 6 L~V~v~~a~~L~~~d~~g~~dPyv~v~~~----~~~~~T~~~~~t~nP~Wne~f~f~v~~~------------~~~~~~~ 69 (1008)
|.|+|++|++|+.+ ..|.+||||+|+++ +..++|++++++.||+|||+|.|.+... +++....
T Consensus 1 L~V~Vi~A~~L~~~-~~g~~dPyv~v~~~~~~~~~~~rT~vv~~t~nP~Wne~f~f~~~~~~~~~~~~~~~~~~~~~~~~ 79 (137)
T cd08675 1 LSVRVLECRDLALK-SNGTCDPFARVTLNYSSKTDTKRTKVKKKTNNPRFDEAFYFELTIGFSYEKKSFKVEEEDLEKSE 79 (137)
T ss_pred CEEEEEEccCCCcc-cCCCCCcEEEEEEecCCcCCeeccceeeCCCCCCcceEEEEEccccccccccccccccccccccE
Confidence 67999999999988 78899999999998 6789999999999999999999998654 2335668
Q ss_pred EEEEEEeCCCCCCCCCeeEEEEEeCcccCCCCCceeEEEecccCC
Q 001830 70 LDAYVYNHNRTTNSKSFLGKVRLTGTSFVPYSDAVVLHYPLEKRS 114 (1008)
Q Consensus 70 l~~~V~d~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~L~~~~ 114 (1008)
|.|+|||.+... +++|||++.+++.++...+ ....||+|++++
T Consensus 80 l~i~V~d~~~~~-~~~~IG~~~i~l~~l~~~~-~~~~W~~L~~~~ 122 (137)
T cd08675 80 LRVELWHASMVS-GDDFLGEVRIPLQGLQQAG-SHQAWYFLQPRE 122 (137)
T ss_pred EEEEEEcCCcCc-CCcEEEEEEEehhhccCCC-cccceEecCCcC
Confidence 999999998764 7899999999999987543 345699999874
No 121
>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family. This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho
Probab=99.64 E-value=7.4e-16 Score=143.01 Aligned_cols=101 Identities=23% Similarity=0.416 Sum_probs=85.5
Q ss_pred eeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eEEEeeeecCCCCCeEeeEEEEEeccC-CcCeEEEEEEecC-
Q 001830 271 MRYLFVRVVKARDLPSKDVTGSLDPFVEVKVGN-----YKGITKYYEKKQNPEWNEVFAFSRERI-QSSVLEVAVKDKD- 343 (1008)
Q Consensus 271 ~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~-----~~~kT~~~~~t~nP~w~e~f~f~~~~~-~~~~l~i~V~d~d- 343 (1008)
.+.|.|+|++|+||+.++ .|.+||||++++.+ .+.||++++++.||+|||+|.|.+... ....|.|+|||++
T Consensus 11 ~~~L~V~Vi~ar~L~~~~-~g~~dpYVkv~l~p~~~~~~~~kT~v~~~t~~P~~nE~F~f~v~~~~~~~~l~v~V~~~~~ 89 (119)
T cd08685 11 NRKLTLHVLEAKGLRSTN-SGTCNSYVKISLSPDKEVRFRQKTSTVPDSANPLFHETFSFDVNERDYQKRLLVTVWNKLS 89 (119)
T ss_pred CCEEEEEEEEEECCCCCC-CCCCCeeEEEEEEeCCCCcceEeCccccCCCCCccccEEEEEcChHHhCCEEEEEEECCCC
Confidence 468999999999999988 78999999999975 356899999999999999999997432 2357899999998
Q ss_pred CC-CCeeeEEEEEEccccCCCCCCCCCCccEEEEe
Q 001830 344 VV-KDDYVGLVRFDLNEVPTRVPPDSPLAAEWYRL 377 (1008)
Q Consensus 344 ~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L 377 (1008)
.. ++++||++.|++.++..+ .....||.|
T Consensus 90 ~~~~~~~lG~~~i~l~~~~~~-----~~~~~Wy~l 119 (119)
T cd08685 90 KSRDSGLLGCMSFGVKSIVNQ-----KEISGWYYL 119 (119)
T ss_pred CcCCCEEEEEEEecHHHhccC-----ccccceEeC
Confidence 33 479999999999999854 446799976
No 122
>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and
Probab=99.64 E-value=1.3e-15 Score=143.74 Aligned_cols=112 Identities=36% Similarity=0.474 Sum_probs=95.0
Q ss_pred cccccccCcCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC---eEEEeeeecCCCCCeEeeEEEEEecc--CCcCe
Q 001830 260 LRASTYDLVEQMRYLFVRVVKARDLPSKDVTGSLDPFVEVKVGN---YKGITKYYEKKQNPEWNEVFAFSRER--IQSSV 334 (1008)
Q Consensus 260 ~~~~~~~~~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~---~~~kT~~~~~t~nP~w~e~f~f~~~~--~~~~~ 334 (1008)
.+++.|+. ..+.|.|+|++|+||+..+..+.+||||++++.+ ..++|++++++.||+|||+|.|.+.. +....
T Consensus 6 ~~~l~y~~--~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~ 83 (124)
T cd08385 6 QFSLDYDF--QSNQLTVGIIQAADLPAMDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFTFKVPYSELGNKT 83 (124)
T ss_pred EEEEEEeC--CCCEEEEEEEEeeCCCCccCCCCCCCEEEEEEEcCCCCceecccCcCCCCCceeeeEEEeCCHHHhCCCE
Confidence 44666654 3468999999999999999889999999999864 46799999999999999999999753 34568
Q ss_pred EEEEEEecC-CCCCeeeEEEEEEccccCCCCCCCCCCccEEEEee
Q 001830 335 LEVAVKDKD-VVKDDYVGLVRFDLNEVPTRVPPDSPLAAEWYRLE 378 (1008)
Q Consensus 335 l~i~V~d~d-~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~ 378 (1008)
|.|+|||++ .+++++||++.+++.++..+ ....+|++|+
T Consensus 84 l~~~V~d~d~~~~~~~lG~~~i~l~~~~~~-----~~~~~W~~l~ 123 (124)
T cd08385 84 LVFSVYDFDRFSKHDLIGEVRVPLLTVDLG-----HVTEEWRDLE 123 (124)
T ss_pred EEEEEEeCCCCCCCceeEEEEEecCcccCC-----CCcceEEEcc
Confidence 999999998 67899999999999998764 4567999985
No 123
>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins. KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1
Probab=99.64 E-value=1.5e-15 Score=144.05 Aligned_cols=112 Identities=28% Similarity=0.445 Sum_probs=94.9
Q ss_pred cccccccCcCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eEEEeeeecCCCCCeEeeEEEEEec--cCCc
Q 001830 260 LRASTYDLVEQMRYLFVRVVKARDLPSKDVTGSLDPFVEVKVGN-----YKGITKYYEKKQNPEWNEVFAFSRE--RIQS 332 (1008)
Q Consensus 260 ~~~~~~~~~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~-----~~~kT~~~~~t~nP~w~e~f~f~~~--~~~~ 332 (1008)
.+++.|+ ...+.|.|+|++|+||+..+..+.+||||+|.+.+ .+++|++++++.||+|||+|.|.+. ++..
T Consensus 6 ~~~l~y~--~~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~~~nP~wne~f~f~i~~~~l~~ 83 (127)
T cd04030 6 QLTIRYS--SQRQKLIVTVHKCRNLPPCDSSDIPDPYVRLYLLPDKSKSTRRKTSVKKDNLNPVFDETFEFPVSLEELKR 83 (127)
T ss_pred EEEEEEe--CCCCEEEEEEEEEECCCCccCCCCCCceEEEEEEcCCCCCceEecccccCCCCCEECeEEEEecCHHHhcC
Confidence 4566666 34578999999999999999889999999999963 5689999999999999999999974 3455
Q ss_pred CeEEEEEEecC-C--CCCeeeEEEEEEccccCCCCCCCCCCccEEEEee
Q 001830 333 SVLEVAVKDKD-V--VKDDYVGLVRFDLNEVPTRVPPDSPLAAEWYRLE 378 (1008)
Q Consensus 333 ~~l~i~V~d~d-~--~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~ 378 (1008)
..|.|.|||.+ . +++++||++.++|.++..+ .....|++|.
T Consensus 84 ~~l~i~v~~~~~~~~~~~~~iG~~~i~l~~l~~~-----~~~~~W~~L~ 127 (127)
T cd04030 84 RTLDVAVKNSKSFLSREKKLLGQVLIDLSDLDLS-----KGFTQWYDLT 127 (127)
T ss_pred CEEEEEEEECCcccCCCCceEEEEEEeccccccc-----CCccceEECc
Confidence 78999999998 3 5799999999999999764 4467999874
No 124
>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence
Probab=99.64 E-value=1.9e-15 Score=142.61 Aligned_cols=114 Identities=26% Similarity=0.363 Sum_probs=92.6
Q ss_pred cccccccCcCceeEEEEEEEEeecCCCCCCC-CCCCcEEEEEECC---eEEEeeeecCCCCCeEeeEEEEE-ec--cCCc
Q 001830 260 LRASTYDLVEQMRYLFVRVVKARDLPSKDVT-GSLDPFVEVKVGN---YKGITKYYEKKQNPEWNEVFAFS-RE--RIQS 332 (1008)
Q Consensus 260 ~~~~~~~~~~~~~~L~V~v~~a~~L~~~d~~-g~~dpyv~v~~~~---~~~kT~~~~~t~nP~w~e~f~f~-~~--~~~~ 332 (1008)
.+++.|+.. .+.|.|+|++|+||+..+.. |.+||||++.+.+ ++.||++++++.||+|||+|.|. +. +...
T Consensus 6 ~~~l~y~~~--~~~L~V~Vi~a~~L~~~~~~~~~~DpyV~v~l~~~~~~~~kT~v~~~t~nP~wnE~F~f~~~~~~~~~~ 83 (128)
T cd08388 6 FFSLRYNSE--KKALLVNIIECRDLPAMDEQSGTSDPYVKLQLLPEKEHKVKTRVLRKTRNPVYDETFTFYGIPYNQLQD 83 (128)
T ss_pred EEEEEEECC--CCEEEEEEEEeECCCCCCCCCCCcCCEEEEEEeCCcCceeeccEEcCCCCCceeeEEEEcccCHHHhCC
Confidence 456667643 46999999999999998875 8999999999963 46799999999999999999994 42 3445
Q ss_pred CeEEEEEEecC-CCCCeeeEEEEEEccccCCCCCCCCCCccEEEEee
Q 001830 333 SVLEVAVKDKD-VVKDDYVGLVRFDLNEVPTRVPPDSPLAAEWYRLE 378 (1008)
Q Consensus 333 ~~l~i~V~d~d-~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~ 378 (1008)
..|.|+|||+| .+++++||++.++|.++.... ......|.+|.
T Consensus 84 ~~L~~~V~d~d~~~~d~~lG~~~i~L~~l~~~~---~~~~~~~~~~~ 127 (128)
T cd08388 84 LSLHFAVLSFDRYSRDDVIGEVVCPLAGADLLN---EGELLVSREIQ 127 (128)
T ss_pred CEEEEEEEEcCCCCCCceeEEEEEeccccCCCC---CceEEEEEecc
Confidence 67999999998 778999999999999997642 13356787764
No 125
>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat
Probab=99.64 E-value=1.2e-15 Score=143.89 Aligned_cols=107 Identities=22% Similarity=0.364 Sum_probs=90.0
Q ss_pred CceEEEEEEEeeCCCCCC-CCCCCCcEEEEEEC---CeeeccccCCCCCCCeeeeEEEEEecCCCCCCCceEEEEEEeCC
Q 001830 3 HLKLGVEVVSAYELMPKD-GQGSSNAFVELHFD---GQKFRTTTKEKDLTPVWNESFYFNISDPHNLSNLALDAYVYNHN 78 (1008)
Q Consensus 3 ~~~L~V~v~~a~~L~~~d-~~g~~dPyv~v~~~---~~~~~T~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~~~V~d~~ 78 (1008)
++.|.|+|++|+||+.++ ..|.+||||+|++. .+.++|+++++++||+|||+|.|.+.. ..++...|.|.|||++
T Consensus 13 ~~~L~V~v~~a~~L~~~~~~~~~~dpyV~v~l~~~~~~~~~T~v~~~~~~P~wne~f~f~i~~-~~l~~~~l~i~v~d~~ 91 (123)
T cd08390 13 EEQLTVSLIKARNLPPRTKDVAHCDPFVKVCLLPDERRSLQSKVKRKTQNPNFDETFVFQVSF-KELQRRTLRLSVYDVD 91 (123)
T ss_pred CCEEEEEEEEecCCCCccCCCCCCCcEEEEEEeeCCCCceEeeeEcCCCCCccceEEEEEcCH-HHhcccEEEEEEEECC
Confidence 478999999999999998 68899999999984 345889999999999999999999753 2234458999999998
Q ss_pred CCCCCCCeeEEEEEeCcccCCCCCceeEEEeccc
Q 001830 79 RTTNSKSFLGKVRLTGTSFVPYSDAVVLHYPLEK 112 (1008)
Q Consensus 79 ~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~L~~ 112 (1008)
..+ ++++||++.++|.++...... ..|++|++
T Consensus 92 ~~~-~~~~iG~~~i~L~~l~~~~~~-~~w~~L~~ 123 (123)
T cd08390 92 RFS-RHCIIGHVLFPLKDLDLVKGG-VVWRDLEP 123 (123)
T ss_pred cCC-CCcEEEEEEEeccceecCCCc-eEEEeCCC
Confidence 765 789999999999998775544 46999863
No 126
>cd04032 C2_Perforin C2 domain of Perforin. Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few
Probab=99.64 E-value=1.2e-15 Score=141.99 Aligned_cols=91 Identities=25% Similarity=0.338 Sum_probs=79.6
Q ss_pred ceEEEEEEEeeCCCCCCCCCCCCcEEEEEECCeeeccccCCCCCCCeeeeEEEEEecCCCCCCCceEEEEEEeCCCCCCC
Q 001830 4 LKLGVEVVSAYELMPKDGQGSSNAFVELHFDGQKFRTTTKEKDLTPVWNESFYFNISDPHNLSNLALDAYVYNHNRTTNS 83 (1008)
Q Consensus 4 ~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~~~V~d~~~~~~~ 83 (1008)
+.|.|+|++|++|+. +..|.+||||+|++++++++|+++++++||+|||+|.|...... ....|.|+|||++.++ +
T Consensus 28 ~~L~V~V~~A~~L~~-d~~g~~DPYVkV~~~~~~~kT~vi~~t~nPvWNE~F~f~~~~~~--~~~~L~v~V~D~d~~s-~ 103 (127)
T cd04032 28 ATLTVTVLRATGLWG-DYFTSTDGYVKVFFGGQEKRTEVIWNNNNPRWNATFDFGSVELS--PGGKLRFEVWDRDNGW-D 103 (127)
T ss_pred EEEEEEEEECCCCCc-CcCCCCCeEEEEEECCccccCceecCCCCCcCCCEEEEecccCC--CCCEEEEEEEeCCCCC-C
Confidence 689999999999984 77789999999999999999999999999999999999853221 3458999999998875 7
Q ss_pred CCeeEEEEEeCcccC
Q 001830 84 KSFLGKVRLTGTSFV 98 (1008)
Q Consensus 84 d~~lG~~~i~l~~l~ 98 (1008)
|++||++.++|....
T Consensus 104 dd~IG~~~i~l~~~~ 118 (127)
T cd04032 104 DDLLGTCSVVPEAGV 118 (127)
T ss_pred CCeeEEEEEEecCCc
Confidence 899999999988654
No 127
>cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase. E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e
Probab=99.64 E-value=2.1e-15 Score=141.83 Aligned_cols=117 Identities=26% Similarity=0.359 Sum_probs=95.8
Q ss_pred ceEEEEEEEeeCCCCCCCCCCCCcEEEEEECCe-eeccccCCCCCCCeeeeEEEEEecCCCCCCCceEEEEEEeCCCCCC
Q 001830 4 LKLGVEVVSAYELMPKDGQGSSNAFVELHFDGQ-KFRTTTKEKDLTPVWNESFYFNISDPHNLSNLALDAYVYNHNRTTN 82 (1008)
Q Consensus 4 ~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~-~~~T~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~~~V~d~~~~~~ 82 (1008)
.+|.|+|++|+ |...+..+.+||||+|+++++ .++|+++++|+||+|||+|.|.+.. ...|.|+|||++..+
T Consensus 2 ~~L~V~i~~a~-l~~~~~~~~~dPyv~v~~~~~~~~kT~v~~~t~~P~Wne~f~~~~~~-----~~~l~~~V~d~~~~~- 74 (125)
T cd04021 2 SQLQITVESAK-LKSNSKSFKPDPYVEVTVDGQPPKKTEVSKKTSNPKWNEHFTVLVTP-----QSTLEFKVWSHHTLK- 74 (125)
T ss_pred ceEEEEEEeeE-CCCCCcCCCCCeEEEEEECCcccEEeeeeCCCCCCccccEEEEEeCC-----CCEEEEEEEeCCCCC-
Confidence 47999999999 666666889999999999988 7999999999999999999999853 248999999998765
Q ss_pred CCCeeEEEEEeCcccCCCCC--c--eeEEEecccCCC-CcccceEEEEEE
Q 001830 83 SKSFLGKVRLTGTSFVPYSD--A--VVLHYPLEKRSI-FSRVKGELGLKV 127 (1008)
Q Consensus 83 ~d~~lG~~~i~l~~l~~~~~--~--~~~~~~L~~~~~-~~~~~G~i~~~~ 127 (1008)
.|++||++.++|.++..... . ...|++|...+. .....|+|.+.+
T Consensus 75 ~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~ 124 (125)
T cd04021 75 ADVLLGEASLDLSDILKNHNGKLENVKLTLNLSSENKGSSVKVGELTVIL 124 (125)
T ss_pred CCcEEEEEEEEHHHhHhhcCCCccceEEEEEEEccCCCcceeeeeEEEEe
Confidence 78999999999999864332 1 224788886653 456789998865
No 128
>cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2
Probab=99.64 E-value=2.7e-15 Score=140.22 Aligned_cols=115 Identities=25% Similarity=0.413 Sum_probs=91.4
Q ss_pred EEEEEEEeeCCCCCCCCCCCCcEEEEEECCee-eccccCCCCCCCeeeeEEEEEecCCCCCCCceEEEEEEeCCCCCCCC
Q 001830 6 LGVEVVSAYELMPKDGQGSSNAFVELHFDGQK-FRTTTKEKDLTPVWNESFYFNISDPHNLSNLALDAYVYNHNRTTNSK 84 (1008)
Q Consensus 6 L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~~-~~T~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~~~V~d~~~~~~~d 84 (1008)
|.|+|++|+||+.. |.+||||++++++++ ++|+++++ .||+|||+|.|.+.. .+.....|.|.|||++.. ..+
T Consensus 2 L~v~vi~a~~l~~~---~~~dpyv~v~~~~~~~~kT~~~~~-~~P~Wne~f~f~v~~-~~~~~~~l~i~v~d~~~~-~~~ 75 (117)
T cd08383 2 LRLRILEAKNLPSK---GTRDPYCTVSLDQVEVARTKTVEK-LNPFWGEEFVFDDPP-PDVTFFTLSFYNKDKRSK-DRD 75 (117)
T ss_pred eEEEEEEecCCCcC---CCCCceEEEEECCEEeEecceEEC-CCCcccceEEEecCC-ccccEEEEEEEEEecccC-CCe
Confidence 78999999999976 789999999999864 89999989 999999999999864 233445789999998655 356
Q ss_pred CeeEEEEEeCcccCCCCCceeEEEecccCCCCcccceEEEEEEEe
Q 001830 85 SFLGKVRLTGTSFVPYSDAVVLHYPLEKRSIFSRVKGELGLKVFV 129 (1008)
Q Consensus 85 ~~lG~~~i~l~~l~~~~~~~~~~~~L~~~~~~~~~~G~i~~~~~~ 129 (1008)
.++|.+.|.... . +.....||+|.+........|+|++.+.|
T Consensus 76 ~~~g~v~l~~~~--~-~~~~~~w~~L~~~~~~~~~~G~l~l~~~~ 117 (117)
T cd08383 76 IVIGKVALSKLD--L-GQGKDEWFPLTPVDPDSEVQGSVRLRARY 117 (117)
T ss_pred eEEEEEEecCcC--C-CCcceeEEECccCCCCCCcCceEEEEEEC
Confidence 777776665433 2 44556799999876556788999999864
No 129
>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins. A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are
Probab=99.64 E-value=3.6e-15 Score=139.99 Aligned_cols=114 Identities=25% Similarity=0.380 Sum_probs=96.4
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEEC-CeEEEeeeecCCCCCeEeeEEEEEeccCCcCeEEEEEEecC-CCC--Cee
Q 001830 274 LFVRVVKARDLPSKDVTGSLDPFVEVKVG-NYKGITKYYEKKQNPEWNEVFAFSRERIQSSVLEVAVKDKD-VVK--DDY 349 (1008)
Q Consensus 274 L~V~v~~a~~L~~~d~~g~~dpyv~v~~~-~~~~kT~~~~~t~nP~w~e~f~f~~~~~~~~~l~i~V~d~d-~~~--d~~ 349 (1008)
|+|+|++|++|...+..+.+||||+++++ .+.++|++++++.||.|||+|.|.+.. ...|.|+|||++ .++ +++
T Consensus 2 l~v~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~--~~~l~i~V~d~~~~~~~~d~~ 79 (123)
T cd08382 2 VRLTVLCADGLAKRDLFRLPDPFAVITVDGGQTHSTDVAKKTLDPKWNEHFDLTVGP--SSIITIQVFDQKKFKKKDQGF 79 (123)
T ss_pred eEEEEEEecCCCccCCCCCCCcEEEEEECCccceEccEEcCCCCCcccceEEEEeCC--CCEEEEEEEECCCCCCCCCce
Confidence 78999999999999988999999999997 567899999999999999999999966 579999999998 443 589
Q ss_pred eEEEEEEccccCCCCCCCCCCccEEEEeecCCC---CccceEEEEEE
Q 001830 350 VGLVRFDLNEVPTRVPPDSPLAAEWYRLEDRKG---EKKKGELMLAV 393 (1008)
Q Consensus 350 lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~---~~~~G~i~l~~ 393 (1008)
||++.+++.++.... .....|++|..... ....|+|.+++
T Consensus 80 lG~~~i~l~~l~~~~----~~~~~~~~l~~~~~~~~~~~~G~v~~~~ 122 (123)
T cd08382 80 LGCVRIRANAVLPLK----DTGYQRLDLRKLKKSDNLSVRGKIVVSL 122 (123)
T ss_pred EeEEEEEHHHccccC----CCccceeEeecCCCCCCceEeeEEEEEe
Confidence 999999999997542 23467999976553 33678888765
No 130
>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.63 E-value=2e-15 Score=141.57 Aligned_cols=111 Identities=28% Similarity=0.369 Sum_probs=94.0
Q ss_pred cccccccCcCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC---eEEEeeeecCCCCCeEeeEEEEE-ec--cCCcC
Q 001830 260 LRASTYDLVEQMRYLFVRVVKARDLPSKDVTGSLDPFVEVKVGN---YKGITKYYEKKQNPEWNEVFAFS-RE--RIQSS 333 (1008)
Q Consensus 260 ~~~~~~~~~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~---~~~kT~~~~~t~nP~w~e~f~f~-~~--~~~~~ 333 (1008)
.+++.|+.. .+.|.|+|++|+||+..+..|.+||||++.+.+ +++||+++++ .||+|||+|.|. +. ++...
T Consensus 6 ~~sl~Y~~~--~~~L~V~Vi~a~nL~~~~~~~~~d~yVk~~llp~~~~~~kTkv~~~-~nP~fnE~F~f~~i~~~~l~~~ 82 (124)
T cd08389 6 DVAFEYDPS--ARKLTVTVIRAQDIPTKDRGGASSWQVHLVLLPSKKQRAKTKVQRG-PNPVFNETFTFSRVEPEELNNM 82 (124)
T ss_pred EEEEEECCC--CCEEEEEEEEecCCCchhcCCCCCcEEEEEEccCCcceeecccccC-CCCcccCEEEECCCCHHHhccC
Confidence 456777643 468999999999999999889999999988854 4678998887 999999999998 53 44567
Q ss_pred eEEEEEEecC-CCCCeeeEEEEEEccccCCCCCCCCCCccEEEEee
Q 001830 334 VLEVAVKDKD-VVKDDYVGLVRFDLNEVPTRVPPDSPLAAEWYRLE 378 (1008)
Q Consensus 334 ~l~i~V~d~d-~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~ 378 (1008)
.|.|+|||++ .+++++||++.|+|.++... .....|++|+
T Consensus 83 ~L~~~V~~~~~~~~~~~lG~~~i~L~~l~~~-----~~~~~w~~L~ 123 (124)
T cd08389 83 ALRFRLYGVERMRKERLIGEKVVPLSQLNLE-----GETTVWLTLE 123 (124)
T ss_pred EEEEEEEECCCcccCceEEEEEEeccccCCC-----CCceEEEeCC
Confidence 8999999998 77899999999999999764 4578999986
No 131
>cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene. In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai
Probab=99.63 E-value=2.4e-15 Score=141.84 Aligned_cols=108 Identities=19% Similarity=0.225 Sum_probs=91.6
Q ss_pred ceEEEEEEEeeCCCCCCCCCCCCcEEEEEECCeeeccccCCC-CCCCeeeeEEEEEecCCCCCCCceEEEEEEeCCCCCC
Q 001830 4 LKLGVEVVSAYELMPKDGQGSSNAFVELHFDGQKFRTTTKEK-DLTPVWNESFYFNISDPHNLSNLALDAYVYNHNRTTN 82 (1008)
Q Consensus 4 ~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~~~-t~nP~Wne~f~f~v~~~~~~~~~~l~~~V~d~~~~~~ 82 (1008)
+.|.|+|++|+||+..+..+.+||||+|+++++.++|++.++ +.||+|||+|.|.+..+.......|.|+|||++.+.
T Consensus 1 g~L~V~V~~A~~L~~~~~~~~~dpyv~v~~~~~~~~T~~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~~~- 79 (124)
T cd04049 1 GTLEVLLISAKGLQDTDFLGKIDPYVIIQCRTQERKSKVAKGDGRNPEWNEKFKFTVEYPGWGGDTKLILRIMDKDNFS- 79 (124)
T ss_pred CeEEEEEEecCCCCCCCCCCCcCceEEEEECCEeeeeeEcCCCCCCCcccceEEEEecCcccCCCCEEEEEEEECccCC-
Confidence 479999999999999998899999999999998899998874 999999999999987542112458999999998775
Q ss_pred CCCeeEEEEEeCcccCCCCCceeEEEecccC
Q 001830 83 SKSFLGKVRLTGTSFVPYSDAVVLHYPLEKR 113 (1008)
Q Consensus 83 ~d~~lG~~~i~l~~l~~~~~~~~~~~~L~~~ 113 (1008)
+|++||++.+++.++...+. ...|++|...
T Consensus 80 ~d~~iG~~~i~l~~l~~~~~-~~~~~~l~p~ 109 (124)
T cd04049 80 DDDFIGEATIHLKGLFEEGV-EPGTAELVPA 109 (124)
T ss_pred CCCeEEEEEEEhHHhhhCCC-CcCceEeecc
Confidence 78999999999999876443 3568999875
No 132
>cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy
Probab=99.63 E-value=1.5e-15 Score=145.81 Aligned_cols=98 Identities=31% Similarity=0.458 Sum_probs=84.0
Q ss_pred CceEEEEEEEeeCCCCCCCCCCCCcEEEEEECC-----------------------------eeeccccCCCCCCCeeee
Q 001830 3 HLKLGVEVVSAYELMPKDGQGSSNAFVELHFDG-----------------------------QKFRTTTKEKDLTPVWNE 53 (1008)
Q Consensus 3 ~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~-----------------------------~~~~T~~~~~t~nP~Wne 53 (1008)
.+.|.|+|++|+||.++|.+|.+||||+|.+.. ..++|+++++|+||+|||
T Consensus 27 ~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~WnE 106 (153)
T cd08676 27 IFVLKVTVIEAKGLLAKDVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAKSIKVTEVKPQTLNPVWNE 106 (153)
T ss_pred eEEEEEEEEeccCCcccCCCCCCCceEEEEEcccccccccccccccccccccccccccccccccEecceecCCCCCcccc
Confidence 478999999999999999999999999999853 137899999999999999
Q ss_pred EEEEEecCCCCCCCceEEEEEEeCCCCCCCCCeeEEEEEeCcccCCCCCceeEEEec
Q 001830 54 SFYFNISDPHNLSNLALDAYVYNHNRTTNSKSFLGKVRLTGTSFVPYSDAVVLHYPL 110 (1008)
Q Consensus 54 ~f~f~v~~~~~~~~~~l~~~V~d~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~L 110 (1008)
+|.|.+... ....|.|+|||++ |+|||++.+++.++... ....||+|
T Consensus 107 ~F~f~v~~~---~~~~L~i~V~D~d-----d~~IG~v~i~l~~l~~~--~~d~W~~L 153 (153)
T cd08676 107 TFRFEVEDV---SNDQLHLDIWDHD-----DDFLGCVNIPLKDLPSC--GLDSWFKL 153 (153)
T ss_pred EEEEEeccC---CCCEEEEEEEecC-----CCeEEEEEEEHHHhCCC--CCCCeEeC
Confidence 999998532 3458999999985 78999999999998732 35679987
No 133
>cd04041 C2A_fungal C2 domain first repeat; fungal group. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan
Probab=99.63 E-value=1.5e-15 Score=139.78 Aligned_cols=100 Identities=29% Similarity=0.435 Sum_probs=85.9
Q ss_pred eEEEEEEEEeecCCCCCCC-CCCCcEEEEEECC---eEEEeeeecCCCCCeEeeEEEEEeccC---CcCeEEEEEEecC-
Q 001830 272 RYLFVRVVKARDLPSKDVT-GSLDPFVEVKVGN---YKGITKYYEKKQNPEWNEVFAFSRERI---QSSVLEVAVKDKD- 343 (1008)
Q Consensus 272 ~~L~V~v~~a~~L~~~d~~-g~~dpyv~v~~~~---~~~kT~~~~~t~nP~w~e~f~f~~~~~---~~~~l~i~V~d~d- 343 (1008)
|.|+|+|++|++|+..|.. +.+||||+|++.+ ..++|+++++++||+|||+|.|.+... ....|.|+|||+|
T Consensus 1 G~L~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~d~ 80 (111)
T cd04041 1 GVLVVTIHRATDLPKADFGTGSSDPYVTASFAKFGKPLYSTRIIRKDLNPVWEETWFVLVTPDEVKAGERLSCRLWDSDR 80 (111)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCCccEEEEEccCCCccEeeeeECCCCCCccceeEEEEeCchhccCCCEEEEEEEeCCC
Confidence 5799999999999999987 8999999999853 457999999999999999999987543 3468999999999
Q ss_pred CCCCeeeEEEEEEccccCCCCCCCCCCccEEEEeec
Q 001830 344 VVKDDYVGLVRFDLNEVPTRVPPDSPLAAEWYRLED 379 (1008)
Q Consensus 344 ~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~ 379 (1008)
.++|++||++.+++.++... ..|+++..
T Consensus 81 ~~~dd~lG~~~i~l~~l~~~--------~~~~~~~~ 108 (111)
T cd04041 81 FTADDRLGRVEIDLKELIED--------RNWMGRRE 108 (111)
T ss_pred CCCCCcceEEEEEHHHHhcC--------CCCCcccc
Confidence 67899999999999999853 47777653
No 134
>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy
Probab=99.63 E-value=7.6e-16 Score=145.56 Aligned_cols=111 Identities=18% Similarity=0.240 Sum_probs=89.0
Q ss_pred CceeEEEEEEEeecCCCCCccCCCCCCCCeEEEEEECC-----EEEEeeeecCCCCcccccEEEEEeeCC---CceEEEE
Q 001830 597 PSIGVLELGILNADGLHPMKTRDGRGTADTYCVAKYGH-----KWVRTRTIINSLSAKYNEQYTWEVYDP---ATVLTVG 668 (1008)
Q Consensus 597 ~~~g~L~v~v~~a~~L~~~~~~~~~g~~dpyv~~~~~~-----~~~~T~~~~~~~nP~wne~f~~~v~~~---~~~l~i~ 668 (1008)
+..+.|.|.|++|+||++++. +..+.+||||++.+.. .+.||++++++.||+|||.|.|.|... ...|.|+
T Consensus 12 ~~~~~L~V~V~karnL~~~d~-~~~~~~DpYVKv~l~~~~~k~~kkkT~v~k~t~nPvfNE~f~F~v~~~~L~~~~L~~~ 90 (138)
T cd08407 12 PAANRLLVVVIKAKNLHSDQL-KLLLGIDVSVKVTLKHQNAKLKKKQTKRAKHKINPVWNEMIMFELPSELLAASSVELE 90 (138)
T ss_pred CCCCeEEEEEEEecCCCcccc-CCCCCCCeEEEEEEEcCCcccceeccceeeCCCCCccccEEEEECCHHHhCccEEEEE
Confidence 455899999999999998752 1234489999999854 246899999999999999999999753 4579999
Q ss_pred EEeCCCCCCCCCCCCceeEEEEEEcccccCCCeEEeeEeeeecCCCC
Q 001830 669 VFDNSHIGGSSGSKDVKIGKVRIRISTLETGRVYTHSYPLLVLHPSG 715 (1008)
Q Consensus 669 V~d~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~ 715 (1008)
|||++.++ ++++||++.+++.. .|...++|..+.......
T Consensus 91 V~d~d~~~-----~~d~iG~v~lg~~~--~g~~~~hW~~ml~~p~~~ 130 (138)
T cd08407 91 VLNQDSPG-----QSLPLGRCSLGLHT--SGTERQHWEEMLDNPRRQ 130 (138)
T ss_pred EEeCCCCc-----CcceeceEEecCcC--CCcHHHHHHHHHhCCCCc
Confidence 99999877 89999999999975 455567888776543333
No 135
>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.62 E-value=3.8e-15 Score=140.88 Aligned_cols=112 Identities=36% Similarity=0.536 Sum_probs=94.1
Q ss_pred cccccccCcCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEEC---CeEEEeeeecCCCCCeEeeEEEEEec---cCCcC
Q 001830 260 LRASTYDLVEQMRYLFVRVVKARDLPSKDVTGSLDPFVEVKVG---NYKGITKYYEKKQNPEWNEVFAFSRE---RIQSS 333 (1008)
Q Consensus 260 ~~~~~~~~~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~---~~~~kT~~~~~t~nP~w~e~f~f~~~---~~~~~ 333 (1008)
.+++.|+. ..+.|.|+|++|+||+..+..+.+||||++.+. +...+|++++++.||+|||+|.|.+. .+...
T Consensus 6 ~~~l~y~~--~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~kT~v~~~t~~P~Wne~f~f~~~~~~~l~~~ 83 (125)
T cd08386 6 QFSVSYDF--QESTLTLKILKAVELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPYEKLQQR 83 (125)
T ss_pred EEEEEECC--CCCEEEEEEEEecCCCCccCCCCCCceEEEEECCCCCcceeeeeecCCCCCccceeEEEcccCHHHhCCC
Confidence 45666653 456899999999999999988999999999994 35689999999999999999999742 33456
Q ss_pred eEEEEEEecC-CCCCeeeEEEEEEccccCCCCCCCCCCccEEEEee
Q 001830 334 VLEVAVKDKD-VVKDDYVGLVRFDLNEVPTRVPPDSPLAAEWYRLE 378 (1008)
Q Consensus 334 ~l~i~V~d~d-~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~ 378 (1008)
.|.|+|||++ .+++++||++.+++.++... .....|+.|.
T Consensus 84 ~l~~~v~d~d~~~~~~~iG~~~i~l~~l~~~-----~~~~~W~~l~ 124 (125)
T cd08386 84 VLYLQVLDYDRFSRNDPIGEVSLPLNKVDLT-----EEQTFWKDLK 124 (125)
T ss_pred EEEEEEEeCCCCcCCcEeeEEEEecccccCC-----CCcceEEecC
Confidence 8999999998 67899999999999999864 4567999885
No 136
>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into
Probab=99.62 E-value=6.1e-15 Score=139.15 Aligned_cols=104 Identities=18% Similarity=0.331 Sum_probs=89.1
Q ss_pred ceeEEEEEEEeecCCCCCccCCCCCCCCeEEEEEECC-----EEEEeeeecCCCCcccccEEEEEeeCC---CceEEEEE
Q 001830 598 SIGVLELGILNADGLHPMKTRDGRGTADTYCVAKYGH-----KWVRTRTIINSLSAKYNEQYTWEVYDP---ATVLTVGV 669 (1008)
Q Consensus 598 ~~g~L~v~v~~a~~L~~~~~~~~~g~~dpyv~~~~~~-----~~~~T~~~~~~~nP~wne~f~~~v~~~---~~~l~i~V 669 (1008)
..+.|.|+|++|+||++++ ...|.+||||++.+.+ ...+|++++++.||.|||+|.|.+... ...|.|+|
T Consensus 12 ~~~~L~V~v~~a~~L~~~~--~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~wne~f~f~i~~~~l~~~~l~i~v 89 (123)
T cd08521 12 KTGSLEVHIKECRNLAYAD--EKKKRSNPYVKVYLLPDKSKQSKRKTSVKKNTTNPVFNETLKYHISKSQLETRTLQLSV 89 (123)
T ss_pred CCCEEEEEEEEecCCCCcC--CCCCCCCcEEEEEEecCCCcCceeeccccCCCCCCcccceEEEeCCHHHhCCCEEEEEE
Confidence 4488999999999999764 1467899999998732 457999999999999999999998753 45799999
Q ss_pred EeCCCCCCCCCCCCceeEEEEEEcccccCCCeEEeeEee
Q 001830 670 FDNSHIGGSSGSKDVKIGKVRIRISTLETGRVYTHSYPL 708 (1008)
Q Consensus 670 ~d~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L 708 (1008)
||++.++ ++++||++.++|+++..+.....||+|
T Consensus 90 ~d~~~~~-----~~~~iG~~~i~l~~l~~~~~~~~w~~l 123 (123)
T cd08521 90 WHHDRFG-----RNTFLGEVEIPLDSWDLDSQQSEWYPL 123 (123)
T ss_pred EeCCCCc-----CCceeeEEEEecccccccCCCccEEEC
Confidence 9998776 889999999999999777777899987
No 137
>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin
Probab=99.61 E-value=2.7e-15 Score=147.06 Aligned_cols=105 Identities=30% Similarity=0.472 Sum_probs=89.1
Q ss_pred ceeEEEEEEEEeecCCCCCCCCCCCcEEEEEEC-----CeEEEeeeecCCCCCeEeeEEEEEe---ccCCcCeEEEEEEe
Q 001830 270 QMRYLFVRVVKARDLPSKDVTGSLDPFVEVKVG-----NYKGITKYYEKKQNPEWNEVFAFSR---ERIQSSVLEVAVKD 341 (1008)
Q Consensus 270 ~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~-----~~~~kT~~~~~t~nP~w~e~f~f~~---~~~~~~~l~i~V~d 341 (1008)
..|.|.|+|++|+||+..+..|.+||||++++. ..++||++++++.||.|||+|.|.+ .++....|.|+|||
T Consensus 25 ~~g~L~V~Vi~A~nL~~~d~~g~~DPYVkv~l~~~~~~~~~~kT~vi~~t~nP~WnE~f~f~~~~~~~l~~~~L~i~V~d 104 (162)
T cd04020 25 STGELHVWVKEAKNLPALKSGGTSDSFVKCYLLPDKSKKSKQKTPVVKKSVNPVWNHTFVYDGVSPEDLSQACLELTVWD 104 (162)
T ss_pred CCceEEEEEEeeeCCCCCCCCCCCCCEEEEEEEcCCCCCcceeCCccCCCCCCCCCCEEEEecCCHHHhCCCEEEEEEEe
Confidence 457899999999999999988999999999984 2568999999999999999999984 23445689999999
Q ss_pred cC-CCCCeeeEEEEEEccccCCCCCCCCCCccEEEEeec
Q 001830 342 KD-VVKDDYVGLVRFDLNEVPTRVPPDSPLAAEWYRLED 379 (1008)
Q Consensus 342 ~d-~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~ 379 (1008)
++ .+++++||++.+++.++... .....|+.+.+
T Consensus 105 ~d~~~~d~~lG~v~i~l~~~~~~-----~~~~~w~~~~~ 138 (162)
T cd04020 105 HDKLSSNDFLGGVRLGLGTGKSY-----GQAVDWMDSTG 138 (162)
T ss_pred CCCCCCCceEEEEEEeCCccccC-----CCccccccCCh
Confidence 98 67799999999999998754 23567887754
No 138
>cd04018 C2C_Ferlin C2 domain third repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.61 E-value=5.6e-15 Score=141.82 Aligned_cols=110 Identities=26% Similarity=0.423 Sum_probs=90.9
Q ss_pred EEEEEEEeecCCCCCCC--------------CCCCcEEEEEECCeEEEeeeecCCCCCeEeeEEEEEecc-CCcCeEEEE
Q 001830 274 LFVRVVKARDLPSKDVT--------------GSLDPFVEVKVGNYKGITKYYEKKQNPEWNEVFAFSRER-IQSSVLEVA 338 (1008)
Q Consensus 274 L~V~v~~a~~L~~~d~~--------------g~~dpyv~v~~~~~~~kT~~~~~t~nP~w~e~f~f~~~~-~~~~~l~i~ 338 (1008)
|.|+|++|++|+.+|.. +.+||||+|.+++++.+|++++++.||+|||+|.|.+.. .....|.|+
T Consensus 2 ~~V~V~~A~dLp~~d~~~~~~~~~~~~~~~~~~~DPYV~V~~~g~~~kT~v~~~t~nPvWNE~f~f~v~~p~~~~~l~~~ 81 (151)
T cd04018 2 FIFKIYRAEDLPQMDSGIMANVKKAFLGEKKELVDPYVEVSFAGQKVKTSVKKNSYNPEWNEQIVFPEMFPPLCERIKIQ 81 (151)
T ss_pred eEEEEEEeCCCCccChhhhccceeccccCCCCCcCcEEEEEECCEeeecceEcCCCCCCcceEEEEEeeCCCcCCEEEEE
Confidence 78999999999998854 368999999999999999999999999999999998643 235689999
Q ss_pred EEecC-CCCCeeeEEEEEEccccCCCCCCC--CCCccEEEEeecCCCC
Q 001830 339 VKDKD-VVKDDYVGLVRFDLNEVPTRVPPD--SPLAAEWYRLEDRKGE 383 (1008)
Q Consensus 339 V~d~d-~~~d~~lG~~~i~l~~l~~~~~~~--~~~~~~w~~L~~~~~~ 383 (1008)
|||+| .++|++||.+.+++.++....... ....++|+.|.+....
T Consensus 82 v~D~d~~~~dd~iG~~~l~l~~l~~~~~~~~lp~~~p~W~~lyg~~~~ 129 (151)
T cd04018 82 IRDWDRVGNDDVIGTHFIDLSKISNSGDEGFLPTFGPSFVNLYGSPRE 129 (151)
T ss_pred EEECCCCCCCCEEEEEEEeHHHhccCCccccCCccCceEEEeecCccc
Confidence 99999 679999999999999987642100 0245799999876543
No 139
>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap
Probab=99.61 E-value=1.3e-14 Score=137.40 Aligned_cols=118 Identities=25% Similarity=0.368 Sum_probs=98.2
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCe---EEEeeeecCCCCCeEeeEEEEEeccCCcCeEEEEEEecC-CCCCe
Q 001830 273 YLFVRVVKARDLPSKDVTGSLDPFVEVKVGNY---KGITKYYEKKQNPEWNEVFAFSRERIQSSVLEVAVKDKD-VVKDD 348 (1008)
Q Consensus 273 ~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~---~~kT~~~~~t~nP~w~e~f~f~~~~~~~~~l~i~V~d~d-~~~d~ 348 (1008)
.|+|+|++|++|+..+..+.+||||++.+++. .++|++++++.||.|||+|.|.+.......|.|+|||++ .++++
T Consensus 2 ~~~V~v~~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~~~~~t~~P~Wne~f~f~i~~~~~~~L~i~v~d~d~~~~~~ 81 (126)
T cd04043 2 LFTIRIVRAENLKADSSNGLSDPYVTLVDTNGKRRIAKTRTIYDTLNPRWDEEFELEVPAGEPLWISATVWDRSFVGKHD 81 (126)
T ss_pred EEEEEEEEeECCCCCCCCCCCCceEEEEECCCCeeeecccEecCCCCCcccceEEEEcCCCCCCEEEEEEEECCCCCCCc
Confidence 58999999999999998899999999998753 579999999999999999999987755678999999999 56899
Q ss_pred eeEEEEEEccccCCCCCCCCCCccEEEEeecCCCCccceEEEEEEEEecc
Q 001830 349 YVGLVRFDLNEVPTRVPPDSPLAAEWYRLEDRKGEKKKGELMLAVWYGTQ 398 (1008)
Q Consensus 349 ~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~G~i~l~~~~~~~ 398 (1008)
+||++.++|..+.... +......|++|.. .|.+++.+.+...
T Consensus 82 ~iG~~~i~l~~~~~~~--~~~~~~~w~~l~~------~g~i~l~~~~~~~ 123 (126)
T cd04043 82 LCGRASLKLDPKRFGD--DGLPREIWLDLDT------QGRLLLRVSMEGE 123 (126)
T ss_pred eEEEEEEecCHHHcCC--CCCCceEEEEcCC------CCeEEEEEEEeee
Confidence 9999999998765431 1234578999974 2888888877543
No 140
>cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family. SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas
Probab=99.61 E-value=7.6e-15 Score=139.03 Aligned_cols=118 Identities=23% Similarity=0.298 Sum_probs=97.2
Q ss_pred ceEEEEEEEeeCCCCCCCCCCCCcEEEEEECCee-eccccCCCCCCCeeeeEEEEEecCCCCCCCceEEEEEEeCCCCC-
Q 001830 4 LKLGVEVVSAYELMPKDGQGSSNAFVELHFDGQK-FRTTTKEKDLTPVWNESFYFNISDPHNLSNLALDAYVYNHNRTT- 81 (1008)
Q Consensus 4 ~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~~-~~T~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~~~V~d~~~~~- 81 (1008)
..|.|.|++|++|++++ +|||.|.+++.+ .||+++.++.||.|||.|.|..... -..|.|.||+.+...
T Consensus 11 ~sL~v~V~EAk~Lp~~~-----~~Y~~i~Ld~~~vaRT~v~~~~~nP~W~E~F~f~~~~~----~~~l~v~v~k~~~~~~ 81 (146)
T cd04013 11 NSLKLWIIEAKGLPPKK-----RYYCELCLDKTLYARTTSKLKTDTLFWGEHFEFSNLPP----VSVITVNLYRESDKKK 81 (146)
T ss_pred EEEEEEEEEccCCCCcC-----CceEEEEECCEEEEEEEEEcCCCCCcceeeEEecCCCc----ccEEEEEEEEccCccc
Confidence 57899999999999876 899999999998 6999999999999999999985432 237999998765432
Q ss_pred --CCCCeeEEEEEeCcccCCCCCceeEEEecccCCCCc--------ccceEEEEEEEeec
Q 001830 82 --NSKSFLGKVRLTGTSFVPYSDAVVLHYPLEKRSIFS--------RVKGELGLKVFVTD 131 (1008)
Q Consensus 82 --~~d~~lG~~~i~l~~l~~~~~~~~~~~~L~~~~~~~--------~~~G~i~~~~~~~~ 131 (1008)
.++++||.+.||+.++.. +.....||+|......+ ...|.|++++.|.+
T Consensus 82 ~~~~~~~IG~V~Ip~~~l~~-~~~ve~Wfpl~~~~~~~~~~~~~~~~~~~~lrik~rf~~ 140 (146)
T cd04013 82 KKDKSQLIGTVNIPVTDVSS-RQFVEKWYPVSTPKGNGKSGGKEGKGESPSIRIKARYQS 140 (146)
T ss_pred cccCCcEEEEEEEEHHHhcC-CCcccEEEEeecCCCCCccccccccCCCCEEEEEEEEEE
Confidence 157899999999999884 55667899999776543 45589999998876
No 141
>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s
Probab=99.61 E-value=4e-15 Score=141.83 Aligned_cols=96 Identities=29% Similarity=0.393 Sum_probs=82.2
Q ss_pred CceEEEEEEEeeCCCCCCCCCCCCcEEEEEEC-------CeeeccccCCCCCCCeeeeEEEEEecCCC-CCCCceEEEEE
Q 001830 3 HLKLGVEVVSAYELMPKDGQGSSNAFVELHFD-------GQKFRTTTKEKDLTPVWNESFYFNISDPH-NLSNLALDAYV 74 (1008)
Q Consensus 3 ~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~-------~~~~~T~~~~~t~nP~Wne~f~f~v~~~~-~~~~~~l~~~V 74 (1008)
...|.|+|++|++|+..+..|.+||||+|++. ..+++|+++++|+||+|||+|.|.+.... ......|.|+|
T Consensus 15 ~~~L~V~Vi~A~~L~~~~~~g~~dPyv~v~l~~~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~~~~~~~~l~~~V 94 (133)
T cd04009 15 EQSLRVEILNARNLLPLDSNGSSDPFVKVELLPRHLFPDVPTPKTQVKKKTLFPLFDESFEFNVPPEQCSVEGALLLFTV 94 (133)
T ss_pred CCEEEEEEEEeeCCCCcCCCCCCCCEEEEEEECCCcCccccccccccCcCCCCCccCCEEEEEechhhcccCCCEEEEEE
Confidence 36899999999999999988999999999985 34689999999999999999999985421 12345899999
Q ss_pred EeCCCCCCCCCeeEEEEEeCcccCC
Q 001830 75 YNHNRTTNSKSFLGKVRLTGTSFVP 99 (1008)
Q Consensus 75 ~d~~~~~~~d~~lG~~~i~l~~l~~ 99 (1008)
||++.++ +|+|||++.++|.++..
T Consensus 95 ~d~d~~~-~d~~iG~~~i~l~~l~~ 118 (133)
T cd04009 95 KDYDLLG-SNDFEGEAFLPLNDIPG 118 (133)
T ss_pred EecCCCC-CCcEeEEEEEeHHHCCc
Confidence 9998775 78999999999998753
No 142
>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.60 E-value=5.1e-16 Score=158.11 Aligned_cols=225 Identities=22% Similarity=0.341 Sum_probs=163.7
Q ss_pred CceEEEEEEEeeCCCCCCCCCCCCcEEEEEECC-----eeeccccCCCCCCCeeeeEEEEEecCCCCCCCceEEEEEEeC
Q 001830 3 HLKLGVEVVSAYELMPKDGQGSSNAFVELHFDG-----QKFRTTTKEKDLTPVWNESFYFNISDPHNLSNLALDAYVYNH 77 (1008)
Q Consensus 3 ~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~-----~~~~T~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~~~V~d~ 77 (1008)
++++..+|..|++|.++|.+|..|||++.++.. .+.+|++..+++||.|||+-.+.....+......+.+.|.|.
T Consensus 92 ~~~~~~tl~~a~~lk~~~~~~~~d~~~~~~llpga~kl~slr~~t~~n~lN~~w~etev~~~i~~~~~~~K~~Rk~vcdn 171 (362)
T KOG1013|consen 92 SRMLDTTLDRAKGLKPMDINGLADPYVKLHLLPGAGKLNSLRTKTTRNTLNPEWNETEVYEGITDDDTHLKVLRKVVCDN 171 (362)
T ss_pred hhhcceeechhcccchhhhhhhcchHHhhhcccchhhhhhhhHHhhccCcCcceeccceecccccchhhhhhhheeeccC
Confidence 578999999999999999999999999999862 358899999999999999888775445666777889999999
Q ss_pred CCCCCCCCeeEEEEEeCcccCCCCCceeEEEecccCCCCcccceEEEEEEEeecCCCCCCCCCCCCCccCCCCCCccccc
Q 001830 78 NRTTNSKSFLGKVRLTGTSFVPYSDAVVLHYPLEKRSIFSRVKGELGLKVFVTDDPSIRSSNPLPAMESFGHSDLRSTKS 157 (1008)
Q Consensus 78 ~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~L~~~~~~~~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (1008)
+.+. ++++.|+..+++..+.+... +. ..+++....+ .+
T Consensus 172 ~~~~-~~~sqGq~r~~lkKl~p~q~----------k~----------f~~cl~~~lp-----~~---------------- 209 (362)
T KOG1013|consen 172 DKKT-HNESQGQSRVSLKKLKPLQR----------KS----------FNICLEKSLP-----SE---------------- 209 (362)
T ss_pred cccc-cccCcccchhhhhccChhhc----------ch----------hhhhhhccCC-----cc----------------
Confidence 8876 78899999998777654321 00 0011111000 00
Q ss_pred CCCCCCCCCCCCCCCchhhcccccccCCCCccccccCCCCCCCCCCCCCccccccccCCCCCcceeeeccCCCCCCCCCc
Q 001830 158 QAPEQVPSSAPDPFSDDKARRRHTFHHLPNANISQQQQHSSPSAAQPSMNYGAYEMKSEPQASKIVHTYSGLSSQPTDYA 237 (1008)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (1008)
+++. ..+++
T Consensus 210 rad~------------------~~~E~----------------------------------------------------- 218 (362)
T KOG1013|consen 210 RADR------------------DEDEE----------------------------------------------------- 218 (362)
T ss_pred cccc------------------cchhh-----------------------------------------------------
Confidence 0000 00000
Q ss_pred ccccCCCCCCCccccceeeccCcccccccCcCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eEEEeeeec
Q 001830 238 LKETSPFLGGGQVIGGRVVRGDLRASTYDLVEQMRYLFVRVVKARDLPSKDVTGSLDPFVEVKVGN-----YKGITKYYE 312 (1008)
Q Consensus 238 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~-----~~~kT~~~~ 312 (1008)
+|++ .+++.|+ .....|.|++++|..|..+|.+|.+||||..++.. .++||.+.+
T Consensus 219 --------------rg~i----~isl~~~--s~~~~l~vt~iRc~~l~ssDsng~sDpyvS~~l~pdv~~~fkkKt~~~K 278 (362)
T KOG1013|consen 219 --------------RGAI----LISLAYS--STTPGLIVTIIRCSHLASSDSNGYSDPYVSQRLSPDVGKKFKKKTQQKK 278 (362)
T ss_pred --------------ccce----eeeeccC--cCCCceEEEEEEeeeeeccccCCCCCccceeecCCCcchhhcccCcchh
Confidence 0111 1122222 22346889999999999999999999999999874 367899999
Q ss_pred CCCCCeEeeEEEEEe--ccCCcCeEEEEEEecCCC-CCeeeEEEEEEcccc
Q 001830 313 KKQNPEWNEVFAFSR--ERIQSSVLEVAVKDKDVV-KDDYVGLVRFDLNEV 360 (1008)
Q Consensus 313 ~t~nP~w~e~f~f~~--~~~~~~~l~i~V~d~d~~-~d~~lG~~~i~l~~l 360 (1008)
+|.||.||+.|.|.+ .++....+.|.|||++.+ +.+++|-+...+...
T Consensus 279 ~t~~p~fd~~~~~~i~pgdLa~~kv~lsvgd~~~G~s~d~~GG~~~g~~rr 329 (362)
T KOG1013|consen 279 KTLNPEFDEEFFYDIGPGDLAYKKVALSVGDYDIGKSNDSIGGSMLGGYRR 329 (362)
T ss_pred ccCCccccccccccCCccchhcceEEEeecccCCCcCccCCCccccccccc
Confidence 999999999999987 456678899999999966 789999877654433
No 143
>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.60 E-value=3.8e-15 Score=141.98 Aligned_cols=105 Identities=22% Similarity=0.306 Sum_probs=86.3
Q ss_pred CceEEEEEEEeeCCCCCCCCCCCCcEEEEEEC---C---eeeccccCCCCCCCeeeeEEEEEecCCCCCCCceEEEEEEe
Q 001830 3 HLKLGVEVVSAYELMPKDGQGSSNAFVELHFD---G---QKFRTTTKEKDLTPVWNESFYFNISDPHNLSNLALDAYVYN 76 (1008)
Q Consensus 3 ~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~---~---~~~~T~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~~~V~d 76 (1008)
.+.|.|+|++|+||+.++..|.+||||++++. + .+++|+++++++||+|||+|.|.+.. +++....|.|.|||
T Consensus 14 ~~~L~V~VikarnL~~~~~~~~~dpyVkv~llp~~~~~~~~~kT~v~~~t~nPvfnEtF~f~i~~-~~l~~~~L~~~V~~ 92 (138)
T cd08408 14 TGRLSVEVIKGSNFKNLAMNKAPDTYVKLTLLNSDGQEISKSKTSIRRGQPDPEFKETFVFQVAL-FQLSEVTLMFSVYN 92 (138)
T ss_pred CCeEEEEEEEecCCCccccCCCCCeeEEEEEEeCCCcceeeccceeecCCCCCcEeeeEEEECCH-HHhCccEEEEEEEE
Confidence 47899999999999999999999999999984 2 24799999999999999999999864 45677799999999
Q ss_pred CCCCCCCCCeeEEEEEeCcccCCCCCceeEEEecc
Q 001830 77 HNRTTNSKSFLGKVRLTGTSFVPYSDAVVLHYPLE 111 (1008)
Q Consensus 77 ~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~L~ 111 (1008)
++.+. ++++||++.+++..... +....|+.+.
T Consensus 93 ~~~~~-~~~~iG~v~l~~~~~~~--~~~~hW~~~l 124 (138)
T cd08408 93 KRKMK-RKEMIGWFSLGLNSSGE--EEEEHWNEMK 124 (138)
T ss_pred CCCCC-CCcEEEEEEECCcCCCc--hHHHHHHHHH
Confidence 98865 88999999999765322 1223466554
No 144
>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins. SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such
Probab=99.60 E-value=5.2e-15 Score=139.90 Aligned_cols=117 Identities=24% Similarity=0.370 Sum_probs=99.1
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECC-eEEEeeeec-CCCCCeEeeEEEEEeccCC----cCeEEEEEEecC-CCC
Q 001830 274 LFVRVVKARDLPSKDVTGSLDPFVEVKVGN-YKGITKYYE-KKQNPEWNEVFAFSRERIQ----SSVLEVAVKDKD-VVK 346 (1008)
Q Consensus 274 L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~-~~~kT~~~~-~t~nP~w~e~f~f~~~~~~----~~~l~i~V~d~d-~~~ 346 (1008)
|+|+|++|++|+..+..+.+||||+|++++ ++++|+++. ++.||.|||.|.|.+.+.. ...|.|+|||++ .++
T Consensus 2 L~V~V~sA~~L~~~~~~~~~dpYv~v~~~~~~~~~T~~~~~~~~~P~Wne~f~f~v~~~~~~~~~~~l~~~v~d~~~~~~ 81 (125)
T cd04051 2 LEITIISAEDLKNVNLFGKMKVYAVVWIDPSHKQSTPVDRDGGTNPTWNETLRFPLDERLLQQGRLALTIEVYCERPSLG 81 (125)
T ss_pred EEEEEEEcccCCCCCcccCCceEEEEEECCCcccccccccCCCCCCCCCCEEEEEcChHhcccCccEEEEEEEECCCCCC
Confidence 789999999999988889999999999998 788999875 5899999999999986653 578999999998 578
Q ss_pred CeeeEEEEEEccccCCCCCCCCCCccEEEEeecCCCCccceEEEE
Q 001830 347 DDYVGLVRFDLNEVPTRVPPDSPLAAEWYRLEDRKGEKKKGELML 391 (1008)
Q Consensus 347 d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~G~i~l 391 (1008)
+++||++.+++.++......+......||.|....+. ..|.|.+
T Consensus 82 ~~~lG~~~i~l~~l~~~~~~~~~~~~~~~~l~~~~g~-~~G~~~~ 125 (125)
T cd04051 82 DKLIGEVRVPLKDLLDGASPAGELRFLSYQLRRPSGK-PQGVLNF 125 (125)
T ss_pred CCcEEEEEEEHHHhhcccCCCCcceeEEEEeECCCCC-cCeEEeC
Confidence 9999999999999997644333356799999986643 6788764
No 145
>PLN03008 Phospholipase D delta
Probab=99.60 E-value=5.7e-15 Score=171.26 Aligned_cols=126 Identities=24% Similarity=0.340 Sum_probs=108.4
Q ss_pred eEEEEEEEeecCCCCCccC------------------------------CC---------CCCCCeEEEEEECCE-EEEe
Q 001830 600 GVLELGILNADGLHPMKTR------------------------------DG---------RGTADTYCVAKYGHK-WVRT 639 (1008)
Q Consensus 600 g~L~v~v~~a~~L~~~~~~------------------------------~~---------~g~~dpyv~~~~~~~-~~~T 639 (1008)
|.|.++|++|++|++|+.. .+ .+++||||+|.++++ ..||
T Consensus 14 g~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tSDPYV~I~Lg~~rv~RT 93 (868)
T PLN03008 14 GDLDLKIVKARRLPNMDMFSEHLRRLFTACNACARPTDTDDVDPRDKGEFGDKNIRSHRKVITSDPYVTVVVPQATLART 93 (868)
T ss_pred cccEEEEEEcccCCchhHHHHHHHhhcccccccccccccccccccccccccccccccccccCCCCceEEEEECCcceeeE
Confidence 8899999999999874420 01 357899999999886 4699
Q ss_pred eeecCCCCcccccEEEEEeeCCCceEEEEEEeCCCCCCCCCCCCceeEEEEEEcccccCCCeEEeeEeeeecCCCCCccc
Q 001830 640 RTIINSLSAKYNEQYTWEVYDPATVLTVGVFDNSHIGGSSGSKDVKIGKVRIRISTLETGRVYTHSYPLLVLHPSGVKKM 719 (1008)
Q Consensus 640 ~~~~~~~nP~wne~f~~~v~~~~~~l~i~V~d~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~ 719 (1008)
++++++.||+|||.|.|.+.++...|+|+|+|+|.++ +++||++.|||.+|..|...+.|++|.....+..+..
T Consensus 94 rVi~n~~NPvWNE~F~f~vah~~s~L~f~VkD~D~~g------aD~IG~a~IPL~~L~~Ge~vd~Wl~Ll~~~~kp~k~~ 167 (868)
T PLN03008 94 RVLKNSQEPLWDEKFNISIAHPFAYLEFQVKDDDVFG------AQIIGTAKIPVRDIASGERISGWFPVLGASGKPPKAE 167 (868)
T ss_pred EeCCCCCCCCcceeEEEEecCCCceEEEEEEcCCccC------CceeEEEEEEHHHcCCCCceEEEEEccccCCCCCCCC
Confidence 9999999999999999999998889999999999886 5899999999999999999999999997766555556
Q ss_pred cEEEEEEEEEec
Q 001830 720 GELHLAIRFSYT 731 (1008)
Q Consensus 720 G~i~l~~~f~~~ 731 (1008)
|+|+++++|.+-
T Consensus 168 ~kl~v~lqf~pv 179 (868)
T PLN03008 168 TAIFIDMKFTPF 179 (868)
T ss_pred cEEEEEEEEEEc
Confidence 899999999653
No 146
>cd04032 C2_Perforin C2 domain of Perforin. Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few
Probab=99.60 E-value=7.5e-15 Score=136.64 Aligned_cols=94 Identities=21% Similarity=0.296 Sum_probs=83.2
Q ss_pred CceeEEEEEEEeecCCCCCccCCCCCCCCeEEEEEECCEEEEeeeecCCCCcccccEEEEEeeC--CCceEEEEEEeCCC
Q 001830 597 PSIGVLELGILNADGLHPMKTRDGRGTADTYCVAKYGHKWVRTRTIINSLSAKYNEQYTWEVYD--PATVLTVGVFDNSH 674 (1008)
Q Consensus 597 ~~~g~L~v~v~~a~~L~~~~~~~~~g~~dpyv~~~~~~~~~~T~~~~~~~nP~wne~f~~~v~~--~~~~l~i~V~d~~~ 674 (1008)
...|.|+|+|++|++|+. +..|.+||||+|.++++.++|++++++.||+|||+|.|.... ....|.|+|||++.
T Consensus 25 ~~~~~L~V~V~~A~~L~~----d~~g~~DPYVkV~~~~~~~kT~vi~~t~nPvWNE~F~f~~~~~~~~~~L~v~V~D~d~ 100 (127)
T cd04032 25 RGLATLTVTVLRATGLWG----DYFTSTDGYVKVFFGGQEKRTEVIWNNNNPRWNATFDFGSVELSPGGKLRFEVWDRDN 100 (127)
T ss_pred CCcEEEEEEEEECCCCCc----CcCCCCCeEEEEEECCccccCceecCCCCCcCCCEEEEecccCCCCCEEEEEEEeCCC
Confidence 567999999999999983 457889999999999999999999999999999999998543 36789999999998
Q ss_pred CCCCCCCCCceeEEEEEEcccccCC
Q 001830 675 IGGSSGSKDVKIGKVRIRISTLETG 699 (1008)
Q Consensus 675 ~~~~~~~~d~~lG~~~i~l~~l~~~ 699 (1008)
++ +|++||++.++|....++
T Consensus 101 ~s-----~dd~IG~~~i~l~~~~~~ 120 (127)
T cd04032 101 GW-----DDDLLGTCSVVPEAGVHE 120 (127)
T ss_pred CC-----CCCeeEEEEEEecCCcee
Confidence 76 899999999999976644
No 147
>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.60 E-value=8.4e-15 Score=136.31 Aligned_cols=112 Identities=32% Similarity=0.521 Sum_probs=92.4
Q ss_pred EEEEEEEeeCCCCCCCCCCCCcEEEEEECCee-eccccCCCCCCCeeeeEEEEEecCCCCCCCceEEEEEEeCCCCCCCC
Q 001830 6 LGVEVVSAYELMPKDGQGSSNAFVELHFDGQK-FRTTTKEKDLTPVWNESFYFNISDPHNLSNLALDAYVYNHNRTTNSK 84 (1008)
Q Consensus 6 L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~~-~~T~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~~~V~d~~~~~~~d 84 (1008)
|.|+|++|++|+..+..|.+||||+|.+++.. ++|+++.++.||+|||+|.|.+... ....|.|+|||++.++ ++
T Consensus 1 l~v~vi~a~~L~~~~~~~~~dpyv~v~~~~~~~~~T~v~~~~~~P~Wne~f~~~~~~~---~~~~l~~~v~d~~~~~-~~ 76 (115)
T cd04040 1 LTVDVISAENLPSADRNGKSDPFVKFYLNGEKVFKTKTIKKTLNPVWNESFEVPVPSR---VRAVLKVEVYDWDRGG-KD 76 (115)
T ss_pred CEEEEEeeeCCCCCCCCCCCCCeEEEEECCCcceeeceecCCCCCcccccEEEEeccC---CCCEEEEEEEeCCCCC-CC
Confidence 57999999999999988999999999997654 8999999999999999999998542 3458999999998764 78
Q ss_pred CeeEEEEEeCcccCCCCCceeEEEecccCCCCcccceEEE
Q 001830 85 SFLGKVRLTGTSFVPYSDAVVLHYPLEKRSIFSRVKGELG 124 (1008)
Q Consensus 85 ~~lG~~~i~l~~l~~~~~~~~~~~~L~~~~~~~~~~G~i~ 124 (1008)
++||++.+++.++... .....|++|...+. ...|.|.
T Consensus 77 ~~iG~~~~~l~~l~~~-~~~~~~~~L~~~g~--~~~~~~~ 113 (115)
T cd04040 77 DLLGSAYIDLSDLEPE-ETTELTLPLDGQGG--GKLGAVF 113 (115)
T ss_pred CceEEEEEEHHHcCCC-CcEEEEEECcCCCC--ccCceEE
Confidence 9999999999997653 44567999987643 3345543
No 148
>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl
Probab=99.59 E-value=8.3e-15 Score=138.80 Aligned_cols=88 Identities=27% Similarity=0.373 Sum_probs=76.2
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEEC---CE--EEEeeeccCCCCCCcccceeEEEeeCC--CCCcEEEEEEeccC
Q 001830 437 YVRVNVMEAQDLVISDKNRFPDAYVKVQIG---NQ--VLKTKSVQSRTLNPVWNEDMMFVASEP--FEDHLILTVEDRVG 509 (1008)
Q Consensus 437 ~L~v~v~~a~~L~~~d~~g~~dpyv~v~l~---~~--~~kT~~v~~~~~nP~w~e~f~f~v~~~--~~~~l~i~v~d~d~ 509 (1008)
.|.|+|++|+||+..+..|.+||||++.+. .. +.||+++ +++.||.|||+|.|.+... ....|.|+|||+|.
T Consensus 16 ~L~V~Vi~A~nL~~~~~~g~~DpyVkv~l~~~~~~~~k~kT~v~-k~t~nP~~nE~f~F~v~~~~l~~~~l~~~V~~~d~ 94 (136)
T cd08406 16 RLTVVVVKARNLVWDNGKTTADPFVKVYLLQDGRKISKKKTSVK-RDDTNPIFNEAMIFSVPAIVLQDLSLRVTVAESTE 94 (136)
T ss_pred EEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCccccccCCccc-cCCCCCeeceeEEEECCHHHhCCcEEEEEEEeCCC
Confidence 799999999999999988999999999993 22 5577766 5999999999999998643 45689999999999
Q ss_pred CCCCceeEEEEEeCcc
Q 001830 510 PNKDETIGKVVIPLHS 525 (1008)
Q Consensus 510 ~~~d~~lG~~~i~l~~ 525 (1008)
.+++++||++.|+...
T Consensus 95 ~~~~~~iG~v~lg~~~ 110 (136)
T cd08406 95 DGKTPNVGHVIIGPAA 110 (136)
T ss_pred CCCCCeeEEEEECCCC
Confidence 9999999999998764
No 149
>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai
Probab=99.59 E-value=1.7e-15 Score=144.89 Aligned_cols=105 Identities=25% Similarity=0.427 Sum_probs=87.3
Q ss_pred CceEEEEEEEeeCCCCCCCCCCCCcEEEEEECC-----eeeccccCCCCCCCeeeeEEEEEecCCCCCCCceEEEEEEeC
Q 001830 3 HLKLGVEVVSAYELMPKDGQGSSNAFVELHFDG-----QKFRTTTKEKDLTPVWNESFYFNISDPHNLSNLALDAYVYNH 77 (1008)
Q Consensus 3 ~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~-----~~~~T~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~~~V~d~ 77 (1008)
.+.|.|+|++|+||++.|..|.+||||+|++.. .+++|+++++|+||+|||+|.|.+.. ..+....|.|+|||+
T Consensus 12 ~~~L~V~Vi~a~~L~~~d~~~~~DpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~-~~l~~~~l~~~V~d~ 90 (133)
T cd08384 12 RRGLIVGIIRCVNLAAMDANGYSDPFVKLYLKPDAGKKSKHKTQVKKKTLNPEFNEEFFYDIKH-SDLAKKTLEITVWDK 90 (133)
T ss_pred CCEEEEEEEEEcCCCCcCCCCCCCcEEEEEEEcCCCccCCceeeeEeccCCCCcccEEEEECCH-HHhCCCEEEEEEEeC
Confidence 478999999999999999999999999999852 35899999999999999999999864 234456899999999
Q ss_pred CCCCCCCCeeEEEEEeCcccCCCCCceeEEEeccc
Q 001830 78 NRTTNSKSFLGKVRLTGTSFVPYSDAVVLHYPLEK 112 (1008)
Q Consensus 78 ~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~L~~ 112 (1008)
+... +|++||++.+++.. .++....||.+..
T Consensus 91 d~~~-~~~~lG~~~i~l~~---~~~~~~~W~~~l~ 121 (133)
T cd08384 91 DIGK-SNDYIGGLQLGINA---KGERLRHWLDCLK 121 (133)
T ss_pred CCCC-CccEEEEEEEecCC---CCchHHHHHHHHh
Confidence 8764 78999999999875 3334456887754
No 150
>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s
Probab=99.59 E-value=2.3e-15 Score=144.23 Aligned_cols=106 Identities=25% Similarity=0.374 Sum_probs=87.8
Q ss_pred CceEEEEEEEeeCCCCCCCCCCCCcEEEEEEC--Ce---eeccccCCCCCCCeeeeEEEEEecCCCCCCCceEEEEEEeC
Q 001830 3 HLKLGVEVVSAYELMPKDGQGSSNAFVELHFD--GQ---KFRTTTKEKDLTPVWNESFYFNISDPHNLSNLALDAYVYNH 77 (1008)
Q Consensus 3 ~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~--~~---~~~T~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~~~V~d~ 77 (1008)
+..|.|+|++|+||+..|..|.+||||++++. ++ +++|+++++|+||+|||+|.|.+.. ..+....|.|+|||+
T Consensus 14 ~~~L~V~vi~a~~L~~~d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~k~t~nP~w~e~F~f~v~~-~~~~~~~l~~~v~d~ 92 (136)
T cd08404 14 TNRLTVVVLKARHLPKMDVSGLADPYVKVNLYYGKKRISKKKTHVKKCTLNPVFNESFVFDIPS-EELEDISVEFLVLDS 92 (136)
T ss_pred CCeEEEEEEEeeCCCccccCCCCCeEEEEEEEcCCceeeeEcCccccCCCCCccCceEEEECCH-HHhCCCEEEEEEEEC
Confidence 46899999999999999999999999999984 22 5789999999999999999999853 233456799999999
Q ss_pred CCCCCCCCeeEEEEEeCcccCCCCCceeEEEecccC
Q 001830 78 NRTTNSKSFLGKVRLTGTSFVPYSDAVVLHYPLEKR 113 (1008)
Q Consensus 78 ~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~L~~~ 113 (1008)
+.++ ++++||++.+++.. .+.....|++|...
T Consensus 93 d~~~-~~~~iG~~~~~~~~---~~~~~~~w~~l~~~ 124 (136)
T cd08404 93 DRVT-KNEVIGRLVLGPKA---SGSGGHHWKEVCNP 124 (136)
T ss_pred CCCC-CCccEEEEEECCcC---CCchHHHHHHHHhC
Confidence 8875 78999999999887 23344568887654
No 151
>cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.59 E-value=7.3e-15 Score=136.85 Aligned_cols=103 Identities=22% Similarity=0.366 Sum_probs=87.8
Q ss_pred ceEEEEEEEeeCCCCCCCCCCCCcEEEEEECCe-eeccccCCCCCCCeeeeEEEEEecCCCCCCCceEEEEEEeCCCCCC
Q 001830 4 LKLGVEVVSAYELMPKDGQGSSNAFVELHFDGQ-KFRTTTKEKDLTPVWNESFYFNISDPHNLSNLALDAYVYNHNRTTN 82 (1008)
Q Consensus 4 ~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~-~~~T~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~~~V~d~~~~~~ 82 (1008)
+.|.|+|++|++|+..|..|.+||||+|.++++ .++|++++++.||+|||+|.|.+.... ..|.|+|||++.+.
T Consensus 1 g~L~V~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~~~~----~~L~v~v~d~~~~~- 75 (120)
T cd04045 1 GVLRLHIRKANDLKNLEGVGKIDPYVRVLVNGIVKGRTVTISNTLNPVWDEVLYVPVTSPN----QKITLEVMDYEKVG- 75 (120)
T ss_pred CeEEEEEEeeECCCCccCCCCcCCEEEEEECCEEeeceeEECCCcCCccCceEEEEecCCC----CEEEEEEEECCCCC-
Confidence 478999999999999998999999999999874 589999999999999999999985432 48999999998775
Q ss_pred CCCeeEEEEEeCcccCCCCCceeEEEecccC
Q 001830 83 SKSFLGKVRLTGTSFVPYSDAVVLHYPLEKR 113 (1008)
Q Consensus 83 ~d~~lG~~~i~l~~l~~~~~~~~~~~~L~~~ 113 (1008)
+|++||++.+++.++.... . ..||.|-+.
T Consensus 76 ~d~~IG~~~~~l~~l~~~~-~-~~~~~~~~~ 104 (120)
T cd04045 76 KDRSLGSVEINVSDLIKKN-E-DGKYVEYDD 104 (120)
T ss_pred CCCeeeEEEEeHHHhhCCC-C-CceEEecCC
Confidence 7899999999999987652 2 347776654
No 152
>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are:
Probab=99.59 E-value=6e-15 Score=141.49 Aligned_cols=105 Identities=28% Similarity=0.364 Sum_probs=85.6
Q ss_pred CceEEEEEEEeeCCCCCCCCCCCCcEEEEEEC--C---eeeccccCCCCCCCeeeeEEEEEecCCCCCCCceEEEEEEeC
Q 001830 3 HLKLGVEVVSAYELMPKDGQGSSNAFVELHFD--G---QKFRTTTKEKDLTPVWNESFYFNISDPHNLSNLALDAYVYNH 77 (1008)
Q Consensus 3 ~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~--~---~~~~T~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~~~V~d~ 77 (1008)
.+.|.|+|++|++|+.+|..|.+||||+|++. + .+++|+++++++||+|||+|.|.+.. +.+....|.|+|||+
T Consensus 14 ~~~l~V~Vi~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~-~~l~~~~l~~~v~d~ 92 (136)
T cd08402 14 AGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKRTLNPYYNESFSFEVPF-EQIQKVHLIVTVLDY 92 (136)
T ss_pred CCeEEEEEEEeeCCCcccCCCCCCCeEEEEEEECCcccceeeccceeCCCCCcccceEEEECCH-HHhCCCEEEEEEEeC
Confidence 47899999999999999999999999999984 2 35789999999999999999999753 334455899999999
Q ss_pred CCCCCCCCeeEEEEEeCcccCCCCCceeEEEeccc
Q 001830 78 NRTTNSKSFLGKVRLTGTSFVPYSDAVVLHYPLEK 112 (1008)
Q Consensus 78 ~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~L~~ 112 (1008)
+.++ +|+|||++.|++... +.....|+++..
T Consensus 93 ~~~~-~~~~iG~~~i~~~~~---~~~~~~W~~~~~ 123 (136)
T cd08402 93 DRIG-KNDPIGKVVLGCNAT---GAELRHWSDMLA 123 (136)
T ss_pred CCCC-CCceeEEEEECCccC---ChHHHHHHHHHh
Confidence 8875 789999999998663 233344666543
No 153
>cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene. In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai
Probab=99.59 E-value=9.2e-15 Score=137.90 Aligned_cols=103 Identities=23% Similarity=0.364 Sum_probs=92.1
Q ss_pred eEEEEEEEeecCCCCCccCCCCCCCCeEEEEEECCEEEEeeeecC-CCCcccccEEEEEeeCC----CceEEEEEEeCCC
Q 001830 600 GVLELGILNADGLHPMKTRDGRGTADTYCVAKYGHKWVRTRTIIN-SLSAKYNEQYTWEVYDP----ATVLTVGVFDNSH 674 (1008)
Q Consensus 600 g~L~v~v~~a~~L~~~~~~~~~g~~dpyv~~~~~~~~~~T~~~~~-~~nP~wne~f~~~v~~~----~~~l~i~V~d~~~ 674 (1008)
|.|.|+|++|+||+++ +..+.+||||++.+++...+|++.++ +.||.|||.|.|.+..+ ...|.|+|||++.
T Consensus 1 g~L~V~V~~A~~L~~~---~~~~~~dpyv~v~~~~~~~~T~~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~ 77 (124)
T cd04049 1 GTLEVLLISAKGLQDT---DFLGKIDPYVIIQCRTQERKSKVAKGDGRNPEWNEKFKFTVEYPGWGGDTKLILRIMDKDN 77 (124)
T ss_pred CeEEEEEEecCCCCCC---CCCCCcCceEEEEECCEeeeeeEcCCCCCCCcccceEEEEecCcccCCCCEEEEEEEECcc
Confidence 6899999999999975 45688999999999999999999885 89999999999999887 4689999999987
Q ss_pred CCCCCCCCCceeEEEEEEcccccCCCeEEeeEeeee
Q 001830 675 IGGSSGSKDVKIGKVRIRISTLETGRVYTHSYPLLV 710 (1008)
Q Consensus 675 ~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~ 710 (1008)
++ ++++||++.++++++..+...+.|++|..
T Consensus 78 ~~-----~d~~iG~~~i~l~~l~~~~~~~~~~~l~p 108 (124)
T cd04049 78 FS-----DDDFIGEATIHLKGLFEEGVEPGTAELVP 108 (124)
T ss_pred CC-----CCCeEEEEEEEhHHhhhCCCCcCceEeec
Confidence 76 79999999999999987777789999964
No 154
>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat
Probab=99.59 E-value=1.1e-14 Score=137.29 Aligned_cols=113 Identities=31% Similarity=0.441 Sum_probs=94.0
Q ss_pred cccccccCcCceeEEEEEEEEeecCCCCC-CCCCCCcEEEEEECC---eEEEeeeecCCCCCeEeeEEEEEecc--CCcC
Q 001830 260 LRASTYDLVEQMRYLFVRVVKARDLPSKD-VTGSLDPFVEVKVGN---YKGITKYYEKKQNPEWNEVFAFSRER--IQSS 333 (1008)
Q Consensus 260 ~~~~~~~~~~~~~~L~V~v~~a~~L~~~d-~~g~~dpyv~v~~~~---~~~kT~~~~~t~nP~w~e~f~f~~~~--~~~~ 333 (1008)
.+++.|+. ..+.|.|+|++|+||+..+ ..+.+||||++++.+ ...+|++++++.||+|||+|.|.+.. +...
T Consensus 4 ~~~l~y~~--~~~~L~V~v~~a~~L~~~~~~~~~~dpyV~v~l~~~~~~~~~T~v~~~~~~P~wne~f~f~i~~~~l~~~ 81 (123)
T cd08390 4 WFSVQYDL--EEEQLTVSLIKARNLPPRTKDVAHCDPFVKVCLLPDERRSLQSKVKRKTQNPNFDETFVFQVSFKELQRR 81 (123)
T ss_pred EEEEEECC--CCCEEEEEEEEecCCCCccCCCCCCCcEEEEEEeeCCCCceEeeeEcCCCCCccceEEEEEcCHHHhccc
Confidence 34566664 4568999999999999988 678899999999853 46789999999999999999999754 3346
Q ss_pred eEEEEEEecC-CCCCeeeEEEEEEccccCCCCCCCCCCccEEEEeec
Q 001830 334 VLEVAVKDKD-VVKDDYVGLVRFDLNEVPTRVPPDSPLAAEWYRLED 379 (1008)
Q Consensus 334 ~l~i~V~d~d-~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~ 379 (1008)
.|.|+|||++ .+++++||++.++|.++... .....|++|++
T Consensus 82 ~l~i~v~d~~~~~~~~~iG~~~i~L~~l~~~-----~~~~~w~~L~~ 123 (123)
T cd08390 82 TLRLSVYDVDRFSRHCIIGHVLFPLKDLDLV-----KGGVVWRDLEP 123 (123)
T ss_pred EEEEEEEECCcCCCCcEEEEEEEeccceecC-----CCceEEEeCCC
Confidence 8999999998 56799999999999999875 34569999863
No 155
>cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy
Probab=99.59 E-value=8.4e-15 Score=140.72 Aligned_cols=100 Identities=31% Similarity=0.564 Sum_probs=88.0
Q ss_pred CceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECCe-----------------------------EEEeeeecCCCCCeE
Q 001830 269 EQMRYLFVRVVKARDLPSKDVTGSLDPFVEVKVGNY-----------------------------KGITKYYEKKQNPEW 319 (1008)
Q Consensus 269 ~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~-----------------------------~~kT~~~~~t~nP~w 319 (1008)
++.+.|.|+|++|+||..+|..|.+||||+|.+.+. .++|++++++.||.|
T Consensus 25 ~~~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~W 104 (153)
T cd08676 25 PPIFVLKVTVIEAKGLLAKDVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAKSIKVTEVKPQTLNPVW 104 (153)
T ss_pred CCeEEEEEEEEeccCCcccCCCCCCCceEEEEEcccccccccccccccccccccccccccccccccEecceecCCCCCcc
Confidence 446789999999999999999999999999998642 368999999999999
Q ss_pred eeEEEEEeccCCcCeEEEEEEecCCCCCeeeEEEEEEccccCCCCCCCCCCccEEEEe
Q 001830 320 NEVFAFSRERIQSSVLEVAVKDKDVVKDDYVGLVRFDLNEVPTRVPPDSPLAAEWYRL 377 (1008)
Q Consensus 320 ~e~f~f~~~~~~~~~l~i~V~d~d~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L 377 (1008)
||+|.|.+.++....|.|+|||++ +++||++.+++.++.. .....||+|
T Consensus 105 nE~F~f~v~~~~~~~L~i~V~D~d---d~~IG~v~i~l~~l~~------~~~d~W~~L 153 (153)
T cd08676 105 NETFRFEVEDVSNDQLHLDIWDHD---DDFLGCVNIPLKDLPS------CGLDSWFKL 153 (153)
T ss_pred ccEEEEEeccCCCCEEEEEEEecC---CCeEEEEEEEHHHhCC------CCCCCeEeC
Confidence 999999998766679999999998 8999999999999983 235899986
No 156
>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1). Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha
Probab=99.59 E-value=2.8e-14 Score=136.69 Aligned_cols=118 Identities=23% Similarity=0.295 Sum_probs=93.4
Q ss_pred EEEEEEeecC--CCCCccCCCCCCCCeEEEEEE-----CCEEEEeeeecCCCCcccccEEEEEeeCC---------CceE
Q 001830 602 LELGILNADG--LHPMKTRDGRGTADTYCVAKY-----GHKWVRTRTIINSLSAKYNEQYTWEVYDP---------ATVL 665 (1008)
Q Consensus 602 L~v~v~~a~~--L~~~~~~~~~g~~dpyv~~~~-----~~~~~~T~~~~~~~nP~wne~f~~~v~~~---------~~~l 665 (1008)
..++|..|++ |++. +..+.+||||++.+ +.+.+||+++++|+||+|||+|.|.|... ...|
T Consensus 4 ~el~i~~~~~~~l~~~---~~~~~~DpYVk~~l~~p~~~~~k~KT~v~k~TlnPvfNE~f~f~I~~~~~~~~R~l~~~~L 80 (155)
T cd08690 4 IELTIVRCIGIPLPSG---WNPKDLDTYVKFEFPYPNEEPQSGKTSTIKDTNSPEYNESFKLNINRKHRSFQRVFKRHGL 80 (155)
T ss_pred eEEEEEEeeccccCCC---cCCCCCCeEEEEEEecCCCCCceeecCcccCCCCCcccceEEEEeccccchhhhhccCCcE
Confidence 3556666666 5543 45778999999986 34688999999999999999999999654 3469
Q ss_pred EEEEEeCCCCCCCCCCCCceeEEEEEEcccccCCCeEEeeEeeeecCCCCCccccEEEEEEEEE
Q 001830 666 TVGVFDNSHIGGSSGSKDVKIGKVRIRISTLETGRVYTHSYPLLVLHPSGVKKMGELHLAIRFS 729 (1008)
Q Consensus 666 ~i~V~d~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~G~i~l~~~f~ 729 (1008)
.|+|||++.+. .+|++||++.|+|+.+..+.....|++|.... ....|.|+++++..
T Consensus 81 ~~~V~d~~~f~----~~D~~iG~~~i~L~~l~~~~~~~~~~~L~~~~---k~~Gg~l~v~ir~r 137 (155)
T cd08690 81 KFEVYHKGGFL----RSDKLLGTAQVKLEPLETKCEIHESVDLMDGR---KATGGKLEVKVRLR 137 (155)
T ss_pred EEEEEeCCCcc----cCCCeeEEEEEEcccccccCcceEEEEhhhCC---CCcCCEEEEEEEec
Confidence 99999998753 27999999999999998777777899997311 12359999999874
No 157
>cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP). ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i
Probab=99.58 E-value=1.3e-14 Score=138.77 Aligned_cols=91 Identities=30% Similarity=0.498 Sum_probs=83.6
Q ss_pred eeEEEEEEEeecCCCCCccCCCCCCCCeEEEEEECCEEEEeeeecCCCCcccccEEEEEeeCCCceEEEEEEeCCCCCCC
Q 001830 599 IGVLELGILNADGLHPMKTRDGRGTADTYCVAKYGHKWVRTRTIINSLSAKYNEQYTWEVYDPATVLTVGVFDNSHIGGS 678 (1008)
Q Consensus 599 ~g~L~v~v~~a~~L~~~~~~~~~g~~dpyv~~~~~~~~~~T~~~~~~~nP~wne~f~~~v~~~~~~l~i~V~d~~~~~~~ 678 (1008)
.|.|+|+|++|+||+.. +. +.+||||+++++++.++|++++++.||.|||.|.|.+.++...|.|+|||++.++
T Consensus 1 ~G~L~V~Vi~a~nL~~~---d~-~~sDPYV~v~~g~~~~kT~vvk~t~nP~WnE~f~f~i~~~~~~l~~~V~D~d~~~-- 74 (145)
T cd04038 1 LGLLKVRVVRGTNLAVR---DF-TSSDPYVVLTLGNQKVKTRVIKKNLNPVWNEELTLSVPNPMAPLKLEVFDKDTFS-- 74 (145)
T ss_pred CeEEEEEEEeeECCCCC---CC-CCcCcEEEEEECCEEEEeeeEcCCCCCeecccEEEEecCCCCEEEEEEEECCCCC--
Confidence 38999999999999965 34 7899999999999999999999999999999999999999889999999999877
Q ss_pred CCCCCceeEEEEEEcccccC
Q 001830 679 SGSKDVKIGKVRIRISTLET 698 (1008)
Q Consensus 679 ~~~~d~~lG~~~i~l~~l~~ 698 (1008)
+|++||.+.+++.++..
T Consensus 75 ---~dd~iG~a~i~l~~l~~ 91 (145)
T cd04038 75 ---KDDSMGEAEIDLEPLVE 91 (145)
T ss_pred ---CCCEEEEEEEEHHHhhh
Confidence 89999999999988743
No 158
>cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-
Probab=99.58 E-value=9.2e-15 Score=139.52 Aligned_cols=107 Identities=25% Similarity=0.425 Sum_probs=85.0
Q ss_pred CceEEEEEEEeeCCCCCCCCCCCCcEEEEEEC-C----eeeccccCCCCCCCeeeeEEEEEecCCCCCCCceEEEEEEeC
Q 001830 3 HLKLGVEVVSAYELMPKDGQGSSNAFVELHFD-G----QKFRTTTKEKDLTPVWNESFYFNISDPHNLSNLALDAYVYNH 77 (1008)
Q Consensus 3 ~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~-~----~~~~T~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~~~V~d~ 77 (1008)
.+.|.|+|++|++|+..|..|.+||||+|++. + .+++|+++++|+||+|||+|.|.+.. +++....|.|+|||+
T Consensus 13 ~~~L~V~vi~a~~L~~~d~~g~~DPyV~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~F~f~i~~-~~l~~~~l~~~V~d~ 91 (135)
T cd08410 13 AGRLNVDIIRAKQLLQTDMSQGSDPFVKIQLVHGLKLIKTKKTSCMRGTIDPFYNESFSFKVPQ-EELENVSLVFTVYGH 91 (135)
T ss_pred CCeEEEEEEEecCCCcccCCCCCCeEEEEEEEcCCcccceEcCccccCCCCCccceeEEEeCCH-HHhCCCEEEEEEEeC
Confidence 47899999999999999999999999999973 2 24799999999999999999999853 344555799999999
Q ss_pred CCCCCCCCeeEEEEEeCcccCCCCCceeEEEecccC
Q 001830 78 NRTTNSKSFLGKVRLTGTSFVPYSDAVVLHYPLEKR 113 (1008)
Q Consensus 78 ~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~L~~~ 113 (1008)
|... +|++||++.|...... ......|+.|...
T Consensus 92 d~~~-~~~~iG~~~l~~~~~~--~~~~~~W~~l~~~ 124 (135)
T cd08410 92 NVKS-SNDFIGRIVIGQYSSG--PSETNHWRRMLNS 124 (135)
T ss_pred CCCC-CCcEEEEEEEcCccCC--chHHHHHHHHHhC
Confidence 8765 8899999998753332 2223447666543
No 159
>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=99.57 E-value=1.1e-15 Score=159.91 Aligned_cols=106 Identities=28% Similarity=0.454 Sum_probs=90.1
Q ss_pred CceEEEEEEEeeCCCCCCCCCCCCcEEEEEEC-----CeeeccccCCCCCCCeeeeEEEEEecCCCCCCCceEEEEEEeC
Q 001830 3 HLKLGVEVVSAYELMPKDGQGSSNAFVELHFD-----GQKFRTTTKEKDLTPVWNESFYFNISDPHNLSNLALDAYVYNH 77 (1008)
Q Consensus 3 ~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~-----~~~~~T~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~~~V~d~ 77 (1008)
...|+|+|.+|+||.++|.+|.|||||++.+- ..+++|++++.|+||+|||+|.|.+...+ .+..|.|+|||+
T Consensus 179 ~~~l~v~i~ea~NLiPMDpNGlSDPYvk~kliPD~~~~sKqKTkTik~~LNP~wNEtftf~Lkp~D--kdrRlsiEvWDW 256 (683)
T KOG0696|consen 179 RDVLTVTIKEAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIKATLNPVWNETFTFKLKPSD--KDRRLSIEVWDW 256 (683)
T ss_pred CceEEEEehhhccccccCCCCCCCcceeEEeccCCcchhhhhhhhhhhhcCccccceeEEeccccc--ccceeEEEEecc
Confidence 45799999999999999999999999999983 33689999999999999999999987533 356899999999
Q ss_pred CCCCCCCCeeEEEEEeCcccCCCCCceeEEEecccC
Q 001830 78 NRTTNSKSFLGKVRLTGTSFVPYSDAVVLHYPLEKR 113 (1008)
Q Consensus 78 ~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~L~~~ 113 (1008)
|+.+ ++||+|..++.+++|.... ..-||.|...
T Consensus 257 DrTs-RNDFMGslSFgisEl~K~p--~~GWyKlLsq 289 (683)
T KOG0696|consen 257 DRTS-RNDFMGSLSFGISELQKAP--VDGWYKLLSQ 289 (683)
T ss_pred cccc-cccccceecccHHHHhhcc--hhhHHHHhhh
Confidence 9886 7899999999999986543 3348888653
No 160
>cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.57 E-value=1.7e-14 Score=134.36 Aligned_cols=103 Identities=31% Similarity=0.377 Sum_probs=91.0
Q ss_pred eEEEEEEEeecCCCCCccCCCCCCCCeEEEEEECC-EEEEeeeecCCCCcccccEEEEEeeCCCceEEEEEEeCCCCCCC
Q 001830 600 GVLELGILNADGLHPMKTRDGRGTADTYCVAKYGH-KWVRTRTIINSLSAKYNEQYTWEVYDPATVLTVGVFDNSHIGGS 678 (1008)
Q Consensus 600 g~L~v~v~~a~~L~~~~~~~~~g~~dpyv~~~~~~-~~~~T~~~~~~~nP~wne~f~~~v~~~~~~l~i~V~d~~~~~~~ 678 (1008)
|.|+|+|++|++|+.. +..|.+||||++.+++ ...+|++++++.||.|||.|.|.+..+...|.|+|||++.++
T Consensus 1 g~L~V~Vi~a~~L~~~---d~~g~~DPYv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~~~~~~L~v~v~d~~~~~-- 75 (120)
T cd04045 1 GVLRLHIRKANDLKNL---EGVGKIDPYVRVLVNGIVKGRTVTISNTLNPVWDEVLYVPVTSPNQKITLEVMDYEKVG-- 75 (120)
T ss_pred CeEEEEEEeeECCCCc---cCCCCcCCEEEEEECCEEeeceeEECCCcCCccCceEEEEecCCCCEEEEEEEECCCCC--
Confidence 6899999999999975 4578999999999977 468999999999999999999999888889999999999776
Q ss_pred CCCCCceeEEEEEEcccccCCCeEEeeEeeeec
Q 001830 679 SGSKDVKIGKVRIRISTLETGRVYTHSYPLLVL 711 (1008)
Q Consensus 679 ~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~ 711 (1008)
+|++||++.+++.++..+ ..+.||-|...
T Consensus 76 ---~d~~IG~~~~~l~~l~~~-~~~~~~~~~~~ 104 (120)
T cd04045 76 ---KDRSLGSVEINVSDLIKK-NEDGKYVEYDD 104 (120)
T ss_pred ---CCCeeeEEEEeHHHhhCC-CCCceEEecCC
Confidence 889999999999999776 44788888643
No 161
>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.57 E-value=4.5e-15 Score=142.37 Aligned_cols=105 Identities=27% Similarity=0.371 Sum_probs=85.6
Q ss_pred CceEEEEEEEeeCCCCCCCCCCCCcEEEEEEC--C---eeeccccCCCCCCCeeeeEEEEEecCCCCCCCceEEEEEEeC
Q 001830 3 HLKLGVEVVSAYELMPKDGQGSSNAFVELHFD--G---QKFRTTTKEKDLTPVWNESFYFNISDPHNLSNLALDAYVYNH 77 (1008)
Q Consensus 3 ~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~--~---~~~~T~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~~~V~d~ 77 (1008)
.+.|.|+|++|+||+..|..|.+||||+|++. + .+++|+++++++||+|||+|.|.+.. +.+....|.|+|||+
T Consensus 14 ~~~L~v~vi~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~~kT~v~~~t~~P~wne~F~f~i~~-~~~~~~~l~~~v~d~ 92 (136)
T cd08405 14 ANRITVNIIKARNLKAMDINGTSDPYVKVWLMYKDKRVEKKKTVIKKRTLNPVFNESFIFNIPL-ERLRETTLIITVMDK 92 (136)
T ss_pred CCeEEEEEEEeeCCCccccCCCCCceEEEEEEeCCCccccccCcceeCCCCCcccceEEEeCCH-HHhCCCEEEEEEEEC
Confidence 46899999999999999999999999999983 2 25789999999999999999999742 233446899999999
Q ss_pred CCCCCCCCeeEEEEEeCcccCCCCCceeEEEeccc
Q 001830 78 NRTTNSKSFLGKVRLTGTSFVPYSDAVVLHYPLEK 112 (1008)
Q Consensus 78 ~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~L~~ 112 (1008)
+.++ +|++||++.+++.+. +.....|+++..
T Consensus 93 ~~~~-~~~~lG~~~i~~~~~---~~~~~~w~~~~~ 123 (136)
T cd08405 93 DRLS-RNDLIGKIYLGWKSG---GLELKHWKDMLS 123 (136)
T ss_pred CCCC-CCcEeEEEEECCccC---CchHHHHHHHHh
Confidence 8875 789999999998775 333444666543
No 162
>cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2
Probab=99.57 E-value=3.6e-14 Score=132.62 Aligned_cols=112 Identities=29% Similarity=0.481 Sum_probs=88.4
Q ss_pred EEEEEEeecCCCCCccCCCCCCCCeEEEEEECCE-EEEeeeecCCCCcccccEEEEEeeCC---CceEEEEEEeCCCCCC
Q 001830 602 LELGILNADGLHPMKTRDGRGTADTYCVAKYGHK-WVRTRTIINSLSAKYNEQYTWEVYDP---ATVLTVGVFDNSHIGG 677 (1008)
Q Consensus 602 L~v~v~~a~~L~~~~~~~~~g~~dpyv~~~~~~~-~~~T~~~~~~~nP~wne~f~~~v~~~---~~~l~i~V~d~~~~~~ 677 (1008)
|.|+|++|+||+.. |.+||||+++++++ .++|+++++ .||.|||+|.|.+... ...|.|.++|.+...
T Consensus 2 L~v~vi~a~~l~~~------~~~dpyv~v~~~~~~~~kT~~~~~-~~P~Wne~f~f~v~~~~~~~~~l~i~v~d~~~~~- 73 (117)
T cd08383 2 LRLRILEAKNLPSK------GTRDPYCTVSLDQVEVARTKTVEK-LNPFWGEEFVFDDPPPDVTFFTLSFYNKDKRSKD- 73 (117)
T ss_pred eEEEEEEecCCCcC------CCCCceEEEEECCEEeEecceEEC-CCCcccceEEEecCCccccEEEEEEEEEecccCC-
Confidence 78999999999942 78999999999885 579999999 9999999999999763 346888888886433
Q ss_pred CCCCCCceeEEEEEEcccccCCCeEEeeEeeeecCCCCCccccEEEEEEEE
Q 001830 678 SSGSKDVKIGKVRIRISTLETGRVYTHSYPLLVLHPSGVKKMGELHLAIRF 728 (1008)
Q Consensus 678 ~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~G~i~l~~~f 728 (1008)
++..+|++.|. .+..+...+.||+|...+..+ ...|+|+|+++|
T Consensus 74 ----~~~~~g~v~l~--~~~~~~~~~~w~~L~~~~~~~-~~~G~l~l~~~~ 117 (117)
T cd08383 74 ----RDIVIGKVALS--KLDLGQGKDEWFPLTPVDPDS-EVQGSVRLRARY 117 (117)
T ss_pred ----CeeEEEEEEec--CcCCCCcceeEEECccCCCCC-CcCceEEEEEEC
Confidence 56677766554 455577778999998655433 356999999875
No 163
>cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.57 E-value=1.5e-14 Score=135.74 Aligned_cols=90 Identities=24% Similarity=0.353 Sum_probs=78.5
Q ss_pred eEEEEEEEeeCCCCCCCCCCCCcEEEEEECCee--eccccCCCCCCCeeeeEEEEEecCCCCCCCceEEEEEEeCCCCCC
Q 001830 5 KLGVEVVSAYELMPKDGQGSSNAFVELHFDGQK--FRTTTKEKDLTPVWNESFYFNISDPHNLSNLALDAYVYNHNRTTN 82 (1008)
Q Consensus 5 ~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~~--~~T~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~~~V~d~~~~~~ 82 (1008)
.|+|.|++|++|++.|..|.+||||+|+++++. .+|+++++|+||+|||+|.|.+..+ ....|.|+|||++.++
T Consensus 1 ~lrV~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~~kT~~v~~t~nP~Wne~f~f~~~~~---~~~~L~~~V~d~d~~~- 76 (124)
T cd04037 1 LVRVYVVRARNLQPKDPNGKSDPYLKIKLGKKKINDRDNYIPNTLNPVFGKMFELEATLP---GNSILKISVMDYDLLG- 76 (124)
T ss_pred CEEEEEEECcCCCCCCCCCCCCcEEEEEECCeeccceeeEEECCCCCccceEEEEEecCC---CCCEEEEEEEECCCCC-
Confidence 479999999999999999999999999999875 5788889999999999999997432 2358999999998775
Q ss_pred CCCeeEEEEEeCcccC
Q 001830 83 SKSFLGKVRLTGTSFV 98 (1008)
Q Consensus 83 ~d~~lG~~~i~l~~l~ 98 (1008)
+|++||++.+++.+..
T Consensus 77 ~dd~iG~~~i~l~~~~ 92 (124)
T cd04037 77 SDDLIGETVIDLEDRF 92 (124)
T ss_pred CCceeEEEEEeecccc
Confidence 7899999999987753
No 164
>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.56 E-value=5.3e-15 Score=140.96 Aligned_cols=115 Identities=22% Similarity=0.390 Sum_probs=93.1
Q ss_pred cccccccCcCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC------eEEEeeeecCCCCCeEeeEEEEEec--cCC
Q 001830 260 LRASTYDLVEQMRYLFVRVVKARDLPSKDVTGSLDPFVEVKVGN------YKGITKYYEKKQNPEWNEVFAFSRE--RIQ 331 (1008)
Q Consensus 260 ~~~~~~~~~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~------~~~kT~~~~~t~nP~w~e~f~f~~~--~~~ 331 (1008)
.+++.|+. ..+.|.|+|++|+||...+..|.+||||++++.+ .++||++++++.||+|||+|.|.+. ++.
T Consensus 5 ~~sL~Y~~--~~~~L~V~VikarnL~~~~~~~~~dpyVkv~llp~~~~~~~~~kT~v~~~t~nPvfnEtF~f~i~~~~l~ 82 (138)
T cd08408 5 LLGLEYNA--LTGRLSVEVIKGSNFKNLAMNKAPDTYVKLTLLNSDGQEISKSKTSIRRGQPDPEFKETFVFQVALFQLS 82 (138)
T ss_pred EEEeEEcC--CCCeEEEEEEEecCCCccccCCCCCeeEEEEEEeCCCcceeeccceeecCCCCCcEeeeEEEECCHHHhC
Confidence 34666764 4578999999999999999889999999999953 2468999999999999999999985 456
Q ss_pred cCeEEEEEEecC-CCCCeeeEEEEEEccccCCCCCCCCCCccEEEEeecCCC
Q 001830 332 SSVLEVAVKDKD-VVKDDYVGLVRFDLNEVPTRVPPDSPLAAEWYRLEDRKG 382 (1008)
Q Consensus 332 ~~~l~i~V~d~d-~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~ 382 (1008)
...|.|.|||.+ .+++++||++.+++..... ....+|..+...++
T Consensus 83 ~~~L~~~V~~~~~~~~~~~iG~v~l~~~~~~~------~~~~hW~~~l~~~~ 128 (138)
T cd08408 83 EVTLMFSVYNKRKMKRKEMIGWFSLGLNSSGE------EEEEHWNEMKESKG 128 (138)
T ss_pred ccEEEEEEEECCCCCCCcEEEEEEECCcCCCc------hHHHHHHHHHhCCC
Confidence 679999999998 7889999999998775432 12357877765544
No 165
>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.56 E-value=1.5e-14 Score=133.07 Aligned_cols=101 Identities=20% Similarity=0.365 Sum_probs=84.6
Q ss_pred CCCCCCcEEEEEECCe-eeccccCCCCCCCeeeeEEEEEecCCCCCCCceEEEEEEeCCCCCCCCCeeEEEEEeCcccCC
Q 001830 21 GQGSSNAFVELHFDGQ-KFRTTTKEKDLTPVWNESFYFNISDPHNLSNLALDAYVYNHNRTTNSKSFLGKVRLTGTSFVP 99 (1008)
Q Consensus 21 ~~g~~dPyv~v~~~~~-~~~T~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~~~V~d~~~~~~~d~~lG~~~i~l~~l~~ 99 (1008)
.+|.+||||+|+++++ .++|++++++.||+|||+|.|.+.+. ....|.|.|||++.+ +|++||++.++|.++..
T Consensus 9 ~~G~~dPYv~v~v~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~---~~~~l~i~v~d~~~~--~d~~iG~~~v~L~~l~~ 83 (111)
T cd04052 9 KTGLLSPYAELYLNGKLVYTTRVKKKTNNPSWNASTEFLVTDR---RKSRVTVVVKDDRDR--HDPVLGSVSISLNDLID 83 (111)
T ss_pred cCCCCCceEEEEECCEEEEEEeeeccCCCCccCCceEEEecCc---CCCEEEEEEEECCCC--CCCeEEEEEecHHHHHh
Confidence 4789999999999885 48999999999999999999998543 345799999999876 78999999999999865
Q ss_pred CCCceeEEEecccCCCCcccceEEEEEEEeec
Q 001830 100 YSDAVVLHYPLEKRSIFSRVKGELGLKVFVTD 131 (1008)
Q Consensus 100 ~~~~~~~~~~L~~~~~~~~~~G~i~~~~~~~~ 131 (1008)
.......||+|+. ...|+|++++.|.+
T Consensus 84 ~~~~~~~w~~L~~-----~~~G~i~~~~~~~p 110 (111)
T cd04052 84 ATSVGQQWFPLSG-----NGQGRIRISALWKP 110 (111)
T ss_pred hhhccceeEECCC-----CCCCEEEEEEEEec
Confidence 5555567999985 24699999987754
No 166
>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind
Probab=99.56 E-value=2e-14 Score=137.43 Aligned_cols=105 Identities=22% Similarity=0.359 Sum_probs=84.4
Q ss_pred CCceEEEEEEEeeCCCCCCCCCCCCcEEEEEEC--C---eeeccccCCCCCCCeeeeEEEEEecCCCCCCCceEEEEEEe
Q 001830 2 SHLKLGVEVVSAYELMPKDGQGSSNAFVELHFD--G---QKFRTTTKEKDLTPVWNESFYFNISDPHNLSNLALDAYVYN 76 (1008)
Q Consensus 2 ~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~--~---~~~~T~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~~~V~d 76 (1008)
.++.|.|+|++|++|+++|..|.+||||+|++. + .+++|+++++++||+|||+|.|.+.. +.+....|.|+|||
T Consensus 12 ~~~~L~V~v~~A~~L~~~d~~g~~dpyvkv~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~-~~~~~~~l~~~v~d 90 (134)
T cd08403 12 TAGRLTLTIIKARNLKAMDITGFSDPYVKVSLMCEGRRLKKKKTSVKKNTLNPTYNEALVFDVPP-ENVDNVSLIIAVVD 90 (134)
T ss_pred CCCEEEEEEEEeeCCCccccCCCCCceEEEEEEeCCcccceecCCcccCCCCCcccceEEEECCH-HHhCCCEEEEEEEE
Confidence 357899999999999999999999999999984 2 25789999999999999999999743 33445579999999
Q ss_pred CCCCCCCCCeeEEEEEeCcccCCCCCceeEEEecc
Q 001830 77 HNRTTNSKSFLGKVRLTGTSFVPYSDAVVLHYPLE 111 (1008)
Q Consensus 77 ~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~L~ 111 (1008)
++..+ +|++||++.+++... +.....|+.+.
T Consensus 91 ~~~~~-~~~~IG~~~l~~~~~---~~~~~~w~~~~ 121 (134)
T cd08403 91 YDRVG-HNELIGVCRVGPNAD---GQGREHWNEML 121 (134)
T ss_pred CCCCC-CCceeEEEEECCCCC---CchHHHHHHHH
Confidence 98775 789999999997632 22233465553
No 167
>cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho
Probab=99.56 E-value=8.7e-15 Score=135.78 Aligned_cols=112 Identities=16% Similarity=0.328 Sum_probs=87.5
Q ss_pred ccccccCcCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eEEEeeeecCCC-CCeEeeEEEEEeccC-CcC
Q 001830 261 RASTYDLVEQMRYLFVRVVKARDLPSKDVTGSLDPFVEVKVGN-----YKGITKYYEKKQ-NPEWNEVFAFSRERI-QSS 333 (1008)
Q Consensus 261 ~~~~~~~~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~-----~~~kT~~~~~t~-nP~w~e~f~f~~~~~-~~~ 333 (1008)
++++|. +..+.|+|+|++|+||+..+..+.+||||+|++.. .++||+++++|+ ||+|||+|.|++... ...
T Consensus 5 ~sL~Y~--p~~~rLtV~VikarnL~~~~~~~~~dpYVKV~L~~~~k~~~KkKT~v~k~t~~~P~fNEsF~Fdv~~~~~~v 82 (135)
T cd08692 5 LGTCFQ--AVNSRIQLQILEAQNLPSSSTPLTLSFFVKVGMFSTGGLLYKKKTRLVKSSNGQVKWGETMIFPVTQQEHGI 82 (135)
T ss_pred EEeeec--CcCCeEEEEEEEccCCCcccCCCCCCcEEEEEEEECCCcceeecCccEECCCCCceecceEEEeCCchhhee
Confidence 466665 45689999999999999876667789999999853 367899999995 699999999998532 345
Q ss_pred eEEEEEEecC-CCCCeeeEEEEEEccccCCCCCCCCCCccEEEEeecC
Q 001830 334 VLEVAVKDKD-VVKDDYVGLVRFDLNEVPTRVPPDSPLAAEWYRLEDR 380 (1008)
Q Consensus 334 ~l~i~V~d~d-~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~ 380 (1008)
.|.|+|||++ .+++++||++.+....... ....+|..+...
T Consensus 83 ~l~v~v~d~~~~~~n~~IG~v~lG~~~~~~------~~~~hW~~m~~~ 124 (135)
T cd08692 83 QFLIKLYSRSSVRRKHFLGQVWISSDSSSS------EAVEQWKDTIAN 124 (135)
T ss_pred EEEEEEEeCCCCcCCceEEEEEECCccCCc------hhhhhHHHHHhC
Confidence 7889999998 6789999999999876432 223567666544
No 168
>cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin
Probab=99.55 E-value=2.4e-14 Score=136.50 Aligned_cols=103 Identities=34% Similarity=0.511 Sum_probs=89.7
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEEC----CeEEEeeeecCCCCCeEeeEEEEEeccC---------------CcCe
Q 001830 274 LFVRVVKARDLPSKDVTGSLDPFVEVKVG----NYKGITKYYEKKQNPEWNEVFAFSRERI---------------QSSV 334 (1008)
Q Consensus 274 L~V~v~~a~~L~~~d~~g~~dpyv~v~~~----~~~~kT~~~~~t~nP~w~e~f~f~~~~~---------------~~~~ 334 (1008)
|+|+|++|++|..+ ..|.+||||+++++ +..++|++++++.||.|||+|.|.+... ....
T Consensus 1 L~V~Vi~A~~L~~~-~~g~~dPyv~v~~~~~~~~~~~rT~vv~~t~nP~Wne~f~f~~~~~~~~~~~~~~~~~~~~~~~~ 79 (137)
T cd08675 1 LSVRVLECRDLALK-SNGTCDPFARVTLNYSSKTDTKRTKVKKKTNNPRFDEAFYFELTIGFSYEKKSFKVEEEDLEKSE 79 (137)
T ss_pred CEEEEEEccCCCcc-cCCCCCcEEEEEEecCCcCCeeccceeeCCCCCCcceEEEEEccccccccccccccccccccccE
Confidence 57999999999888 77899999999998 6778999999999999999999997654 4578
Q ss_pred EEEEEEecC-CCCCeeeEEEEEEccccCCCCCCCCCCccEEEEeecCCC
Q 001830 335 LEVAVKDKD-VVKDDYVGLVRFDLNEVPTRVPPDSPLAAEWYRLEDRKG 382 (1008)
Q Consensus 335 l~i~V~d~d-~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~ 382 (1008)
|.|+|||++ .+++++||++.+++.++... .....|++|.....
T Consensus 80 l~i~V~d~~~~~~~~~IG~~~i~l~~l~~~-----~~~~~W~~L~~~~~ 123 (137)
T cd08675 80 LRVELWHASMVSGDDFLGEVRIPLQGLQQA-----GSHQAWYFLQPREA 123 (137)
T ss_pred EEEEEEcCCcCcCCcEEEEEEEehhhccCC-----CcccceEecCCcCC
Confidence 999999998 56899999999999998754 34579999987653
No 169
>cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho
Probab=99.55 E-value=5.8e-14 Score=130.30 Aligned_cols=91 Identities=22% Similarity=0.273 Sum_probs=74.9
Q ss_pred eeEEEEEEEEeecCCCCCCCCCCCcEEEEEEC---C--EEEEeeeccCCCC-CCcccceeEEEeeCCC-CCcEEEEEEec
Q 001830 435 LWYVRVNVMEAQDLVISDKNRFPDAYVKVQIG---N--QVLKTKSVQSRTL-NPVWNEDMMFVASEPF-EDHLILTVEDR 507 (1008)
Q Consensus 435 ~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~l~---~--~~~kT~~v~~~~~-nP~w~e~f~f~v~~~~-~~~l~i~v~d~ 507 (1008)
.+.|+|+|++|+||+.++..+..||||+|.+- . .+.||++. +++. ||.|||+|.|.+.... ...|.|+|||+
T Consensus 13 ~~rLtV~VikarnL~~~~~~~~~dpYVKV~L~~~~k~~~KkKT~v~-k~t~~~P~fNEsF~Fdv~~~~~~v~l~v~v~d~ 91 (135)
T cd08692 13 NSRIQLQILEAQNLPSSSTPLTLSFFVKVGMFSTGGLLYKKKTRLV-KSSNGQVKWGETMIFPVTQQEHGIQFLIKLYSR 91 (135)
T ss_pred CCeEEEEEEEccCCCcccCCCCCCcEEEEEEEECCCcceeecCccE-ECCCCCceecceEEEeCCchhheeEEEEEEEeC
Confidence 45799999999999998777778999999982 2 36677765 5774 6999999999997542 33788899999
Q ss_pred cCCCCCceeEEEEEeCccc
Q 001830 508 VGPNKDETIGKVVIPLHSV 526 (1008)
Q Consensus 508 d~~~~d~~lG~~~i~l~~l 526 (1008)
+..+++++||++.++.+..
T Consensus 92 ~~~~~n~~IG~v~lG~~~~ 110 (135)
T cd08692 92 SSVRRKHFLGQVWISSDSS 110 (135)
T ss_pred CCCcCCceEEEEEECCccC
Confidence 9888999999999999764
No 170
>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai
Probab=99.55 E-value=1.1e-14 Score=139.17 Aligned_cols=113 Identities=28% Similarity=0.449 Sum_probs=92.6
Q ss_pred ccccccCcCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eEEEeeeecCCCCCeEeeEEEEEecc--CCcC
Q 001830 261 RASTYDLVEQMRYLFVRVVKARDLPSKDVTGSLDPFVEVKVGN-----YKGITKYYEKKQNPEWNEVFAFSRER--IQSS 333 (1008)
Q Consensus 261 ~~~~~~~~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~-----~~~kT~~~~~t~nP~w~e~f~f~~~~--~~~~ 333 (1008)
+++.|+ ...+.|.|+|++|+||+..|..|.+||||++++.+ .+++|++++++.||+|||+|.|.+.. +...
T Consensus 4 ~~l~y~--~~~~~L~V~Vi~a~~L~~~d~~~~~DpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~l~~~ 81 (133)
T cd08384 4 VSLMYN--TQRRGLIVGIIRCVNLAAMDANGYSDPFVKLYLKPDAGKKSKHKTQVKKKTLNPEFNEEFFYDIKHSDLAKK 81 (133)
T ss_pred EEEEEc--CCCCEEEEEEEEEcCCCCcCCCCCCCcEEEEEEEcCCCccCCceeeeEeccCCCCcccEEEEECCHHHhCCC
Confidence 455665 34679999999999999999889999999999963 35799999999999999999999753 3456
Q ss_pred eEEEEEEecC-CCCCeeeEEEEEEccccCCCCCCCCCCccEEEEeecCCC
Q 001830 334 VLEVAVKDKD-VVKDDYVGLVRFDLNEVPTRVPPDSPLAAEWYRLEDRKG 382 (1008)
Q Consensus 334 ~l~i~V~d~d-~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~ 382 (1008)
.|.|+|||++ .+++++||++.+++.... ....+|+.+...++
T Consensus 82 ~l~~~V~d~d~~~~~~~lG~~~i~l~~~~-------~~~~~W~~~l~~~~ 124 (133)
T cd08384 82 TLEITVWDKDIGKSNDYIGGLQLGINAKG-------ERLRHWLDCLKNPD 124 (133)
T ss_pred EEEEEEEeCCCCCCccEEEEEEEecCCCC-------chHHHHHHHHhCCC
Confidence 8999999999 567999999999997521 23468888766544
No 171
>cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.55 E-value=2.6e-14 Score=134.23 Aligned_cols=89 Identities=31% Similarity=0.517 Sum_probs=80.6
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECCeE--EEeeeecCCCCCeEeeEEEEEeccCCcCeEEEEEEecC-CCCCeee
Q 001830 274 LFVRVVKARDLPSKDVTGSLDPFVEVKVGNYK--GITKYYEKKQNPEWNEVFAFSRERIQSSVLEVAVKDKD-VVKDDYV 350 (1008)
Q Consensus 274 L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~--~kT~~~~~t~nP~w~e~f~f~~~~~~~~~l~i~V~d~d-~~~d~~l 350 (1008)
|+|.|++|++|+..|..|.+||||+++++++. .+|++++++.||+|||+|.|.+.......|.|+|||++ .++|++|
T Consensus 2 lrV~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~~kT~~v~~t~nP~Wne~f~f~~~~~~~~~L~~~V~d~d~~~~dd~i 81 (124)
T cd04037 2 VRVYVVRARNLQPKDPNGKSDPYLKIKLGKKKINDRDNYIPNTLNPVFGKMFELEATLPGNSILKISVMDYDLLGSDDLI 81 (124)
T ss_pred EEEEEEECcCCCCCCCCCCCCcEEEEEECCeeccceeeEEECCCCCccceEEEEEecCCCCCEEEEEEEECCCCCCCcee
Confidence 78999999999999988999999999999865 57888899999999999999987666679999999999 6789999
Q ss_pred EEEEEEccccCC
Q 001830 351 GLVRFDLNEVPT 362 (1008)
Q Consensus 351 G~~~i~l~~l~~ 362 (1008)
|++.+++.+...
T Consensus 82 G~~~i~l~~~~~ 93 (124)
T cd04037 82 GETVIDLEDRFF 93 (124)
T ss_pred EEEEEeeccccc
Confidence 999999998764
No 172
>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma. A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd
Probab=99.55 E-value=2.5e-14 Score=136.41 Aligned_cols=106 Identities=33% Similarity=0.525 Sum_probs=90.4
Q ss_pred CceEEEEEEEeeCCCCCCCCCCCCcEEEEEECC-----eeeccccCCCCCCCeeeeEEEEEecCCCCCCCceEEEEEEeC
Q 001830 3 HLKLGVEVVSAYELMPKDGQGSSNAFVELHFDG-----QKFRTTTKEKDLTPVWNESFYFNISDPHNLSNLALDAYVYNH 77 (1008)
Q Consensus 3 ~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~-----~~~~T~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~~~V~d~ 77 (1008)
...|.|+|++|++|+..+..|.+||||.|.+.+ ..++|++++++.||.|||+|.|.+...+ ....|.|.|||+
T Consensus 12 ~~~l~v~i~~a~nL~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~wne~f~~~~~~~~--~~~~l~v~v~d~ 89 (131)
T cd04026 12 DNKLTVEVREAKNLIPMDPNGLSDPYVKLKLIPDPKNETKQKTKTIKKTLNPVWNETFTFDLKPAD--KDRRLSIEVWDW 89 (131)
T ss_pred CCEEEEEEEEeeCCCCcCCCCCCCCcEEEEEEcCCCCCceecceeecCCCCCCccceEEEeCCchh--cCCEEEEEEEEC
Confidence 367999999999999999889999999999963 5699999999999999999999986432 245899999999
Q ss_pred CCCCCCCCeeEEEEEeCcccCCCCCceeEEEecccC
Q 001830 78 NRTTNSKSFLGKVRLTGTSFVPYSDAVVLHYPLEKR 113 (1008)
Q Consensus 78 ~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~L~~~ 113 (1008)
+... ++++||++.+++.++... ....||+|.+.
T Consensus 90 ~~~~-~~~~iG~~~~~l~~l~~~--~~~~w~~L~~~ 122 (131)
T cd04026 90 DRTT-RNDFMGSLSFGVSELIKM--PVDGWYKLLNQ 122 (131)
T ss_pred CCCC-CcceeEEEEEeHHHhCcC--ccCceEECcCc
Confidence 8765 789999999999998644 44569999765
No 173
>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s
Probab=99.55 E-value=1.5e-14 Score=138.74 Aligned_cols=104 Identities=20% Similarity=0.254 Sum_probs=86.9
Q ss_pred ceeEEEEEEEeecCCCCCccCCCCCCCCeEEEEEEC--C---EEEEeeeecCCCCcccccEEEEEeeC---CCceEEEEE
Q 001830 598 SIGVLELGILNADGLHPMKTRDGRGTADTYCVAKYG--H---KWVRTRTIINSLSAKYNEQYTWEVYD---PATVLTVGV 669 (1008)
Q Consensus 598 ~~g~L~v~v~~a~~L~~~~~~~~~g~~dpyv~~~~~--~---~~~~T~~~~~~~nP~wne~f~~~v~~---~~~~l~i~V 669 (1008)
..+.|.|+|++|+||+.+ +..|.+||||++.+. + ...+|++++++.||.|||+|.|.+.. ....|.|+|
T Consensus 13 ~~~~L~V~vi~a~~L~~~---d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~k~t~nP~w~e~F~f~v~~~~~~~~~l~~~v 89 (136)
T cd08404 13 TTNRLTVVVLKARHLPKM---DVSGLADPYVKVNLYYGKKRISKKKTHVKKCTLNPVFNESFVFDIPSEELEDISVEFLV 89 (136)
T ss_pred CCCeEEEEEEEeeCCCcc---ccCCCCCeEEEEEEEcCCceeeeEcCccccCCCCCccCceEEEECCHHHhCCCEEEEEE
Confidence 347899999999999975 457899999999883 2 24689999999999999999999874 345699999
Q ss_pred EeCCCCCCCCCCCCceeEEEEEEcccccCCCeEEeeEeeeec
Q 001830 670 FDNSHIGGSSGSKDVKIGKVRIRISTLETGRVYTHSYPLLVL 711 (1008)
Q Consensus 670 ~d~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~ 711 (1008)
||++.++ ++++||++.+++.. .+....+|++|...
T Consensus 90 ~d~d~~~-----~~~~iG~~~~~~~~--~~~~~~~w~~l~~~ 124 (136)
T cd08404 90 LDSDRVT-----KNEVIGRLVLGPKA--SGSGGHHWKEVCNP 124 (136)
T ss_pred EECCCCC-----CCccEEEEEECCcC--CCchHHHHHHHHhC
Confidence 9999876 89999999999998 35556889998643
No 174
>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.55 E-value=5.5e-14 Score=130.78 Aligned_cols=112 Identities=29% Similarity=0.409 Sum_probs=94.5
Q ss_pred EEEEEEeecCCCCCccCCCCCCCCeEEEEEECC-EEEEeeeecCCCCcccccEEEEEeeC-CCceEEEEEEeCCCCCCCC
Q 001830 602 LELGILNADGLHPMKTRDGRGTADTYCVAKYGH-KWVRTRTIINSLSAKYNEQYTWEVYD-PATVLTVGVFDNSHIGGSS 679 (1008)
Q Consensus 602 L~v~v~~a~~L~~~~~~~~~g~~dpyv~~~~~~-~~~~T~~~~~~~nP~wne~f~~~v~~-~~~~l~i~V~d~~~~~~~~ 679 (1008)
|+|+|++|++|+.. +..|.+||||++.+++ ..++|+++.++.||.|||.|.|.+.. ....+.|+|||++.++
T Consensus 1 l~v~vi~a~~L~~~---~~~~~~dpyv~v~~~~~~~~~T~v~~~~~~P~Wne~f~~~~~~~~~~~l~~~v~d~~~~~--- 74 (115)
T cd04040 1 LTVDVISAENLPSA---DRNGKSDPFVKFYLNGEKVFKTKTIKKTLNPVWNESFEVPVPSRVRAVLKVEVYDWDRGG--- 74 (115)
T ss_pred CEEEEEeeeCCCCC---CCCCCCCCeEEEEECCCcceeeceecCCCCCcccccEEEEeccCCCCEEEEEEEeCCCCC---
Confidence 57899999999975 3577899999999975 45799999999999999999999987 4678999999998766
Q ss_pred CCCCceeEEEEEEcccccCCCeEEeeEeeeecCCCCCccccEEEE
Q 001830 680 GSKDVKIGKVRIRISTLETGRVYTHSYPLLVLHPSGVKKMGELHL 724 (1008)
Q Consensus 680 ~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~G~i~l 724 (1008)
++++||++.+++.++..+.....|++|... |..+.|.+.+
T Consensus 75 --~~~~iG~~~~~l~~l~~~~~~~~~~~L~~~---g~~~~~~~~~ 114 (115)
T cd04040 75 --KDDLLGSAYIDLSDLEPEETTELTLPLDGQ---GGGKLGAVFL 114 (115)
T ss_pred --CCCceEEEEEEHHHcCCCCcEEEEEECcCC---CCccCceEEc
Confidence 899999999999999888888999999643 2234477654
No 175
>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id
Probab=99.54 E-value=2.7e-14 Score=136.46 Aligned_cols=91 Identities=23% Similarity=0.323 Sum_probs=78.8
Q ss_pred CceEEEEEEEeeCCCCCCCCCCCCcEEEEEECC-----eeeccccCCCCCCCeeeeEEEEEecCCCCCCCceEEEEEEeC
Q 001830 3 HLKLGVEVVSAYELMPKDGQGSSNAFVELHFDG-----QKFRTTTKEKDLTPVWNESFYFNISDPHNLSNLALDAYVYNH 77 (1008)
Q Consensus 3 ~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~-----~~~~T~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~~~V~d~ 77 (1008)
...|.|+|++|+||+..| .+.+||||+|++.. .+++|+++++++||+|||+|.|.+.. +.+....|.|.|||+
T Consensus 14 ~~~L~V~V~~a~nL~~~~-~~~~d~yVkv~l~~~~~~~~~~kT~v~~~~~nP~fnE~F~f~i~~-~~l~~~~L~~~V~~~ 91 (137)
T cd08409 14 LNRLTVVVLRARGLRQLD-HAHTSVYVKVSLMIHNKVVKTKKTEVVDGAASPSFNESFSFKVTS-RQLDTASLSLSVMQS 91 (137)
T ss_pred CCeEEEEEEEecCCCccc-CCCCCeEEEEEEEECCEEeeeeecccEeCCCCCcccceEEEECCH-HHhCccEEEEEEEeC
Confidence 478999999999999998 88899999999852 35799999999999999999999853 456667899999999
Q ss_pred CCCCCCCCeeEEEEEeCcc
Q 001830 78 NRTTNSKSFLGKVRLTGTS 96 (1008)
Q Consensus 78 ~~~~~~d~~lG~~~i~l~~ 96 (1008)
+... ++++||++.|+...
T Consensus 92 ~~~~-~~~~lG~v~ig~~~ 109 (137)
T cd08409 92 GGVR-KSKLLGRVVLGPFM 109 (137)
T ss_pred CCCC-CcceEEEEEECCcc
Confidence 8765 78999999999644
No 176
>cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1). NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C
Probab=99.54 E-value=1.4e-13 Score=130.20 Aligned_cols=116 Identities=25% Similarity=0.345 Sum_probs=94.1
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECC-------------eEEEeeeecCCCCCeE-eeEEEEEeccCCcCeEEEE
Q 001830 273 YLFVRVVKARDLPSKDVTGSLDPFVEVKVGN-------------YKGITKYYEKKQNPEW-NEVFAFSRERIQSSVLEVA 338 (1008)
Q Consensus 273 ~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~-------------~~~kT~~~~~t~nP~w-~e~f~f~~~~~~~~~l~i~ 338 (1008)
.+.|++++|+||+ ++..|.+||||++++.+ ++++|+++++++||+| ||+|.|.+.. .+.|.|+
T Consensus 2 ~~~~~~~~A~~L~-~~~fg~~DPyvki~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~W~nE~f~f~v~~--~~~L~v~ 78 (137)
T cd08691 2 SFSLSGLQARNLK-KGMFFNPDPYVKISIQPGKRHIFPALPHHGQECRTSIVENTINPVWHREQFVFVGLP--TDVLEIE 78 (137)
T ss_pred EEEEEEEEeCCCC-CccCCCCCceEEEEEECCCcccccccccccceeeeeeEcCCCCCceEceEEEEEcCC--CCEEEEE
Confidence 4679999999998 77789999999999953 3689999999999999 9999999853 4689999
Q ss_pred EEecCC-C---CCeeeEEEEEEccccCCCCCCCCCCccEEEEeecCCCCc-cceEEEEEE
Q 001830 339 VKDKDV-V---KDDYVGLVRFDLNEVPTRVPPDSPLAAEWYRLEDRKGEK-KKGELMLAV 393 (1008)
Q Consensus 339 V~d~d~-~---~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~-~~G~i~l~~ 393 (1008)
|||++. + .+++||++.+++.++.... .......|++|....... ..|+|.+.+
T Consensus 79 V~D~~~~~~~~~~d~lG~~~i~l~~l~~~~--~~~~~~~~~~l~k~~~~s~v~G~~~l~~ 136 (137)
T cd08691 79 VKDKFAKSRPIIRRFLGKLSIPVQRLLERH--AIGDQELSYTLGRRTPTDHVSGQLTFRF 136 (137)
T ss_pred EEecCCCCCccCCceEEEEEEEHHHhcccc--cCCceEEEEECCcCCCCCcEEEEEEEEe
Confidence 999863 3 2799999999999997652 223467899998654333 779888764
No 177
>cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-
Probab=99.54 E-value=1.1e-14 Score=138.90 Aligned_cols=115 Identities=20% Similarity=0.353 Sum_probs=91.0
Q ss_pred cccccccCcCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eEEEeeeecCCCCCeEeeEEEEEec--cCCc
Q 001830 260 LRASTYDLVEQMRYLFVRVVKARDLPSKDVTGSLDPFVEVKVGN-----YKGITKYYEKKQNPEWNEVFAFSRE--RIQS 332 (1008)
Q Consensus 260 ~~~~~~~~~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~-----~~~kT~~~~~t~nP~w~e~f~f~~~--~~~~ 332 (1008)
.+++.|. +..+.|.|+|++|++|+..|..|.+||||++++.. .+++|+++++|.||+|||+|.|.+. +...
T Consensus 4 ~~~l~y~--~~~~~L~V~vi~a~~L~~~d~~g~~DPyV~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~F~f~i~~~~l~~ 81 (135)
T cd08410 4 LLSLNYL--PSAGRLNVDIIRAKQLLQTDMSQGSDPFVKIQLVHGLKLIKTKKTSCMRGTIDPFYNESFSFKVPQEELEN 81 (135)
T ss_pred EEEEEEC--CCCCeEEEEEEEecCCCcccCCCCCCeEEEEEEEcCCcccceEcCccccCCCCCccceeEEEeCCHHHhCC
Confidence 3466665 34578999999999999999889999999999832 3578999999999999999999984 3444
Q ss_pred CeEEEEEEecC-CCCCeeeEEEEEEccccCCCCCCCCCCccEEEEeecCCC
Q 001830 333 SVLEVAVKDKD-VVKDDYVGLVRFDLNEVPTRVPPDSPLAAEWYRLEDRKG 382 (1008)
Q Consensus 333 ~~l~i~V~d~d-~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~ 382 (1008)
..|.|+|||+| .+++++||++.|+...... ....+|+.|....+
T Consensus 82 ~~l~~~V~d~d~~~~~~~iG~~~l~~~~~~~------~~~~~W~~l~~~~~ 126 (135)
T cd08410 82 VSLVFTVYGHNVKSSNDFIGRIVIGQYSSGP------SETNHWRRMLNSQR 126 (135)
T ss_pred CEEEEEEEeCCCCCCCcEEEEEEEcCccCCc------hHHHHHHHHHhCCC
Confidence 57999999999 6789999999876533322 23467887776654
No 178
>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=99.54 E-value=5.3e-15 Score=154.79 Aligned_cols=104 Identities=28% Similarity=0.503 Sum_probs=92.1
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEE-----CCEEEEeeeccCCCCCCcccceeEEEeeCC-CCCcEEEEEEeccCC
Q 001830 437 YVRVNVMEAQDLVISDKNRFPDAYVKVQI-----GNQVLKTKSVQSRTLNPVWNEDMMFVASEP-FEDHLILTVEDRVGP 510 (1008)
Q Consensus 437 ~L~v~v~~a~~L~~~d~~g~~dpyv~v~l-----~~~~~kT~~v~~~~~nP~w~e~f~f~v~~~-~~~~l~i~v~d~d~~ 510 (1008)
.|.|.|.+|+||.+||.+|.+||||++++ +..+++|++++ .++||+|||+|.|.+... .+..|.|+|||||..
T Consensus 181 ~l~v~i~ea~NLiPMDpNGlSDPYvk~kliPD~~~~sKqKTkTik-~~LNP~wNEtftf~Lkp~DkdrRlsiEvWDWDrT 259 (683)
T KOG0696|consen 181 VLTVTIKEAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIK-ATLNPVWNETFTFKLKPSDKDRRLSIEVWDWDRT 259 (683)
T ss_pred eEEEEehhhccccccCCCCCCCcceeEEeccCCcchhhhhhhhhh-hhcCccccceeEEecccccccceeEEEEeccccc
Confidence 69999999999999999999999999999 23478899985 999999999999998543 456899999999999
Q ss_pred CCCceeEEEEEeCccccccccCCcccceeEEcccCc
Q 001830 511 NKDETIGKVVIPLHSVEKRADDRIVHTRWFNLEKSV 546 (1008)
Q Consensus 511 ~~d~~lG~~~i~l~~l~~~~~~~~~~~~w~~L~~~~ 546 (1008)
++++|+|...+.+++|+.. +.+.||.|....
T Consensus 260 sRNDFMGslSFgisEl~K~-----p~~GWyKlLsqe 290 (683)
T KOG0696|consen 260 SRNDFMGSLSFGISELQKA-----PVDGWYKLLSQE 290 (683)
T ss_pred ccccccceecccHHHHhhc-----chhhHHHHhhhh
Confidence 9999999999999999875 477899887644
No 179
>cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase. E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e
Probab=99.54 E-value=1.2e-13 Score=129.95 Aligned_cols=118 Identities=27% Similarity=0.328 Sum_probs=94.6
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCe-EEEeeeecCCCCCeEeeEEEEEeccCCcCeEEEEEEecC-CCCCeee
Q 001830 273 YLFVRVVKARDLPSKDVTGSLDPFVEVKVGNY-KGITKYYEKKQNPEWNEVFAFSRERIQSSVLEVAVKDKD-VVKDDYV 350 (1008)
Q Consensus 273 ~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~-~~kT~~~~~t~nP~w~e~f~f~~~~~~~~~l~i~V~d~d-~~~d~~l 350 (1008)
.|.|+|.+|+ |...+..+.+||||+|+++++ .++|++++++.||.|||.|.|.+.+ ...|.|+|||++ .+++++|
T Consensus 3 ~L~V~i~~a~-l~~~~~~~~~dPyv~v~~~~~~~~kT~v~~~t~~P~Wne~f~~~~~~--~~~l~~~V~d~~~~~~~~~i 79 (125)
T cd04021 3 QLQITVESAK-LKSNSKSFKPDPYVEVTVDGQPPKKTEVSKKTSNPKWNEHFTVLVTP--QSTLEFKVWSHHTLKADVLL 79 (125)
T ss_pred eEEEEEEeeE-CCCCCcCCCCCeEEEEEECCcccEEeeeeCCCCCCccccEEEEEeCC--CCEEEEEEEeCCCCCCCcEE
Confidence 5899999998 555555788999999999987 8999999999999999999999864 468999999998 6689999
Q ss_pred EEEEEEccccCCCCCCCCCCccEEEEeecCC--CCccceEEEEEE
Q 001830 351 GLVRFDLNEVPTRVPPDSPLAAEWYRLEDRK--GEKKKGELMLAV 393 (1008)
Q Consensus 351 G~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~--~~~~~G~i~l~~ 393 (1008)
|++.++|.++.............|+++.... .....|+|.+.+
T Consensus 80 G~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~ 124 (125)
T cd04021 80 GEASLDLSDILKNHNGKLENVKLTLNLSSENKGSSVKVGELTVIL 124 (125)
T ss_pred EEEEEEHHHhHhhcCCCccceEEEEEEEccCCCcceeeeeEEEEe
Confidence 9999999999865222222234589998655 223678888764
No 180
>cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein. The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr
Probab=99.54 E-value=7.5e-14 Score=125.68 Aligned_cols=81 Identities=25% Similarity=0.381 Sum_probs=67.4
Q ss_pred EEEEEEEeeCCCCCCCCCCCCcEEEEEECC-----eeeccccCCCCCCCeeeeEEEEEecCCCCCCCceEEEEEEeCC--
Q 001830 6 LGVEVVSAYELMPKDGQGSSNAFVELHFDG-----QKFRTTTKEKDLTPVWNESFYFNISDPHNLSNLALDAYVYNHN-- 78 (1008)
Q Consensus 6 L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~-----~~~~T~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~~~V~d~~-- 78 (1008)
|.|+|++|+||+ |.+||||++.++. .+++|+++++|+||+|||+|.|.+.+ ...|.|.|||++
T Consensus 1 L~V~V~~A~~L~-----~~sDPYV~l~v~~~~~~~~~~KTk~i~~TlnPvWnE~F~i~l~~-----s~~L~~~v~d~~~~ 70 (118)
T cd08686 1 LNVIVHSAQGFK-----QSANLYCTLEVDSFGYFVKKAKTRVCRDTTEPNWNEEFEIELEG-----SQTLRILCYEKCYS 70 (118)
T ss_pred CEEEEEeCCCCC-----CCCCCEEEEEEcCccccceeeeeeeecCCCCCccceEEEEEeCC-----CCEEEEEEEEcccc
Confidence 689999999996 4699999999963 35899999999999999999999853 348999999983
Q ss_pred ----CCCCCCCeeEEEEEeCcc
Q 001830 79 ----RTTNSKSFLGKVRLTGTS 96 (1008)
Q Consensus 79 ----~~~~~d~~lG~~~i~l~~ 96 (1008)
...++|+++|.+.+.|.-
T Consensus 71 ~~~~d~~~~d~~~G~g~i~Ld~ 92 (118)
T cd08686 71 KVKLDGEGTDAIMGKGQIQLDP 92 (118)
T ss_pred cccccccCcccEEEEEEEEECH
Confidence 123479999988888643
No 181
>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC). PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking
Probab=99.53 E-value=1e-13 Score=131.90 Aligned_cols=117 Identities=25% Similarity=0.376 Sum_probs=95.3
Q ss_pred ceEEEEEEEeeCCCCCC--CCCCCCcEEEEEEC------CeeeccccCCCCC-CCeeeeEEEEEecCCCCCCCceEEEEE
Q 001830 4 LKLGVEVVSAYELMPKD--GQGSSNAFVELHFD------GQKFRTTTKEKDL-TPVWNESFYFNISDPHNLSNLALDAYV 74 (1008)
Q Consensus 4 ~~L~V~v~~a~~L~~~d--~~g~~dPyv~v~~~------~~~~~T~~~~~t~-nP~Wne~f~f~v~~~~~~~~~~l~~~V 74 (1008)
..|+|+|++|+||+..+ ..+.+||||++++. ..+++|+++.++. ||+|||+|.|.+..++ ...|.|+|
T Consensus 2 ~~l~v~vi~a~~L~~~~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~~P~w~e~f~f~~~~~~---~~~l~~~V 78 (128)
T cd00275 2 LTLTIKIISGQQLPKPKGDKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFEFDVTVPE---LAFLRFVV 78 (128)
T ss_pred eEEEEEEEeeecCCCCCCCCCCccCCEEEEEEEeCCCCCCCcEeeeeecCCCcCCccCCcEEEEEeCCC---eEEEEEEE
Confidence 47999999999999888 57899999999993 4568999988776 9999999999986433 24799999
Q ss_pred EeCCCCCCCCCeeEEEEEeCcccCCCCCceeEEEecccCCCCcccceEEEEEEEe
Q 001830 75 YNHNRTTNSKSFLGKVRLTGTSFVPYSDAVVLHYPLEKRSIFSRVKGELGLKVFV 129 (1008)
Q Consensus 75 ~d~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~L~~~~~~~~~~G~i~~~~~~ 129 (1008)
||++.. +|++||++.+++.++.. ...|++|.+........|.|.+++.+
T Consensus 79 ~d~~~~--~~~~iG~~~~~l~~l~~----g~~~~~l~~~~~~~~~~~~l~v~~~~ 127 (128)
T cd00275 79 YDEDSG--DDDFLGQACLPLDSLRQ----GYRHVPLLDSKGEPLELSTLFVHIDI 127 (128)
T ss_pred EeCCCC--CCcEeEEEEEEhHHhcC----ceEEEEecCCCCCCCcceeEEEEEEE
Confidence 999766 78999999999998843 23478998765544567999998865
No 182
>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are:
Probab=99.53 E-value=1.3e-14 Score=139.26 Aligned_cols=114 Identities=28% Similarity=0.343 Sum_probs=92.5
Q ss_pred cccccccCcCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eEEEeeeecCCCCCeEeeEEEEEecc--CCc
Q 001830 260 LRASTYDLVEQMRYLFVRVVKARDLPSKDVTGSLDPFVEVKVGN-----YKGITKYYEKKQNPEWNEVFAFSRER--IQS 332 (1008)
Q Consensus 260 ~~~~~~~~~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~-----~~~kT~~~~~t~nP~w~e~f~f~~~~--~~~ 332 (1008)
.+++.|+. ..+.|.|+|++|++|+.++..|.+||||+|++.+ .+++|++++++.||.|||+|.|.+.. ...
T Consensus 5 ~~~l~y~~--~~~~l~V~Vi~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~ 82 (136)
T cd08402 5 CFSLRYVP--TAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKRTLNPYYNESFSFEVPFEQIQK 82 (136)
T ss_pred EEEeEEcC--CCCeEEEEEEEeeCCCcccCCCCCCCeEEEEEEECCcccceeeccceeCCCCCcccceEEEECCHHHhCC
Confidence 45666763 4579999999999999999899999999999952 35689999999999999999999753 334
Q ss_pred CeEEEEEEecC-CCCCeeeEEEEEEccccCCCCCCCCCCccEEEEeecCCC
Q 001830 333 SVLEVAVKDKD-VVKDDYVGLVRFDLNEVPTRVPPDSPLAAEWYRLEDRKG 382 (1008)
Q Consensus 333 ~~l~i~V~d~d-~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~ 382 (1008)
..|.|+|||++ .+++++||++.+++.... ....+|+++...++
T Consensus 83 ~~l~~~v~d~~~~~~~~~iG~~~i~~~~~~-------~~~~~W~~~~~~~~ 126 (136)
T cd08402 83 VHLIVTVLDYDRIGKNDPIGKVVLGCNATG-------AELRHWSDMLASPR 126 (136)
T ss_pred CEEEEEEEeCCCCCCCceeEEEEECCccCC-------hHHHHHHHHHhCCC
Confidence 58999999999 678999999999997642 23467887766544
No 183
>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.53 E-value=3.4e-15 Score=152.20 Aligned_cols=225 Identities=22% Similarity=0.289 Sum_probs=168.9
Q ss_pred CcccccccCcCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eEEEeeeecCCCCCeEeeEEEEE--ec-cC
Q 001830 259 DLRASTYDLVEQMRYLFVRVVKARDLPSKDVTGSLDPFVEVKVGN-----YKGITKYYEKKQNPEWNEVFAFS--RE-RI 330 (1008)
Q Consensus 259 ~~~~~~~~~~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~-----~~~kT~~~~~t~nP~w~e~f~f~--~~-~~ 330 (1008)
..+.+.|+-. ...+..++..|++|.+++..+..|||++..++. .+.+|++..++.||.|+|+-.+. .. +.
T Consensus 82 ~~~~~~y~~~--~~~~~~tl~~a~~lk~~~~~~~~d~~~~~~llpga~kl~slr~~t~~n~lN~~w~etev~~~i~~~~~ 159 (362)
T KOG1013|consen 82 LEFELLYDSE--SRMLDTTLDRAKGLKPMDINGLADPYVKLHLLPGAGKLNSLRTKTTRNTLNPEWNETEVYEGITDDDT 159 (362)
T ss_pred hhhhhhhhhh--hhhcceeechhcccchhhhhhhcchHHhhhcccchhhhhhhhHHhhccCcCcceeccceecccccchh
Confidence 3455666643 347889999999999999999999999999975 35788899999999999986665 22 23
Q ss_pred CcCeEEEEEEecC-CCCCeeeEEEEEEccccCCCCCCCCCCccEEEEeecCCCC------ccceEEEEEEEEeccCCCcC
Q 001830 331 QSSVLEVAVKDKD-VVKDDYVGLVRFDLNEVPTRVPPDSPLAAEWYRLEDRKGE------KKKGELMLAVWYGTQADEAF 403 (1008)
Q Consensus 331 ~~~~l~i~V~d~d-~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~------~~~G~i~l~~~~~~~~~~~~ 403 (1008)
....+++.|.|.+ +..++++|+..+++..+..... .....|+.-.-+.+. +.+|+|.+++.|..
T Consensus 160 ~~K~~Rk~vcdn~~~~~~~sqGq~r~~lkKl~p~q~---k~f~~cl~~~lp~~rad~~~~E~rg~i~isl~~~s------ 230 (362)
T KOG1013|consen 160 HLKVLRKVVCDNDKKTHNESQGQSRVSLKKLKPLQR---KSFNICLEKSLPSERADRDEDEERGAILISLAYSS------ 230 (362)
T ss_pred hhhhhheeeccCcccccccCcccchhhhhccChhhc---chhhhhhhccCCcccccccchhhccceeeeeccCc------
Confidence 3456888899988 7889999999999888875422 223344433322111 24567777665422
Q ss_pred CCcCCCCCCCCCCCCCCcccccccccccCCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----EEEEeeeccCC
Q 001830 404 PDAWHSDAVTPTDSPSNVSTHIRSKVYHSPRLWYVRVNVMEAQDLVISDKNRFPDAYVKVQIGN-----QVLKTKSVQSR 478 (1008)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~l~~-----~~~kT~~v~~~ 478 (1008)
....+.|++++|.+|..+|.+|.+||||+.++.. .+.+|.+. |+
T Consensus 231 ------------------------------~~~~l~vt~iRc~~l~ssDsng~sDpyvS~~l~pdv~~~fkkKt~~~-K~ 279 (362)
T KOG1013|consen 231 ------------------------------TTPGLIVTIIRCSHLASSDSNGYSDPYVSQRLSPDVGKKFKKKTQQK-KK 279 (362)
T ss_pred ------------------------------CCCceEEEEEEeeeeeccccCCCCCccceeecCCCcchhhcccCcch-hc
Confidence 2235899999999999999999999999999942 24566654 69
Q ss_pred CCCCcccceeEEEeeC--CCCCcEEEEEEeccCCCCCceeEEEEEeCcc
Q 001830 479 TLNPVWNEDMMFVASE--PFEDHLILTVEDRVGPNKDETIGKVVIPLHS 525 (1008)
Q Consensus 479 ~~nP~w~e~f~f~v~~--~~~~~l~i~v~d~d~~~~d~~lG~~~i~l~~ 525 (1008)
+.||.|++.|.|.+.. .....+.|.|||++..+..+++|-+......
T Consensus 280 t~~p~fd~~~~~~i~pgdLa~~kv~lsvgd~~~G~s~d~~GG~~~g~~r 328 (362)
T KOG1013|consen 280 TLNPEFDEEFFYDIGPGDLAYKKVALSVGDYDIGKSNDSIGGSMLGGYR 328 (362)
T ss_pred cCCccccccccccCCccchhcceEEEeecccCCCcCccCCCcccccccc
Confidence 9999999999998853 3455799999999988889999987665543
No 184
>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id
Probab=99.53 E-value=1.4e-14 Score=138.51 Aligned_cols=114 Identities=21% Similarity=0.293 Sum_probs=91.4
Q ss_pred cccccccCcCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eEEEeeeecCCCCCeEeeEEEEEec--cCCc
Q 001830 260 LRASTYDLVEQMRYLFVRVVKARDLPSKDVTGSLDPFVEVKVGN-----YKGITKYYEKKQNPEWNEVFAFSRE--RIQS 332 (1008)
Q Consensus 260 ~~~~~~~~~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~-----~~~kT~~~~~t~nP~w~e~f~f~~~--~~~~ 332 (1008)
.+++.|+. ..+.|.|+|++|+||...+ .+.+||||+|.+.+ .+++|++++++.||+|||+|.|.+. ++..
T Consensus 5 ~~sl~y~~--~~~~L~V~V~~a~nL~~~~-~~~~d~yVkv~l~~~~~~~~~~kT~v~~~~~nP~fnE~F~f~i~~~~l~~ 81 (137)
T cd08409 5 QISLTYNP--TLNRLTVVVLRARGLRQLD-HAHTSVYVKVSLMIHNKVVKTKKTEVVDGAASPSFNESFSFKVTSRQLDT 81 (137)
T ss_pred EEEEEECC--CCCeEEEEEEEecCCCccc-CCCCCeEEEEEEEECCEEeeeeecccEeCCCCCcccceEEEECCHHHhCc
Confidence 45666764 4578999999999999888 78899999999864 3568999999999999999999984 4555
Q ss_pred CeEEEEEEecC-CCCCeeeEEEEEEccccCCCCCCCCCCccEEEEeecCC
Q 001830 333 SVLEVAVKDKD-VVKDDYVGLVRFDLNEVPTRVPPDSPLAAEWYRLEDRK 381 (1008)
Q Consensus 333 ~~l~i~V~d~d-~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~ 381 (1008)
..|.|+|||.+ .+++++||++.+.......+ ....+|..+...+
T Consensus 82 ~~L~~~V~~~~~~~~~~~lG~v~ig~~~~~~~-----~~~~hW~~~~~~p 126 (137)
T cd08409 82 ASLSLSVMQSGGVRKSKLLGRVVLGPFMYARG-----KELEHWNDMLSKP 126 (137)
T ss_pred cEEEEEEEeCCCCCCcceEEEEEECCcccCCC-----hHHHHHHHHHhCC
Confidence 78999999998 67899999999986554432 3346777666544
No 185
>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.53 E-value=4.8e-14 Score=132.77 Aligned_cols=97 Identities=25% Similarity=0.397 Sum_probs=82.1
Q ss_pred CceEEEEEEEeeCCCCCCCCCCCCcEEEEEEC-----CeeeccccCCCCCCCeeeeEEEEEecCCCCCCCceEEEEEEeC
Q 001830 3 HLKLGVEVVSAYELMPKDGQGSSNAFVELHFD-----GQKFRTTTKEKDLTPVWNESFYFNISDPHNLSNLALDAYVYNH 77 (1008)
Q Consensus 3 ~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~-----~~~~~T~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~~~V~d~ 77 (1008)
.+.|.|+|++|++|++.+..+.+||||++++. ...++|+++++++||+|||+|.|......+..+..|.|+|||+
T Consensus 14 ~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~Wne~f~f~~~~~~~~~~~~l~~~v~d~ 93 (123)
T cd04035 14 NSALHCTIIRAKGLKAMDANGLSDPYVKLNLLPGASKATKLRTKTVHKTRNPEFNETLTYYGITEEDIQRKTLRLLVLDE 93 (123)
T ss_pred CCEEEEEEEEeeCCCCCCCCCCCCceEEEEEecCCCCCCceeeeeecCCCCCCccceEEEcCCCHHHhCCCEEEEEEEEc
Confidence 46899999999999999988999999999984 2368999999999999999999973322334456899999999
Q ss_pred CCCCCCCCeeEEEEEeCcccCCCC
Q 001830 78 NRTTNSKSFLGKVRLTGTSFVPYS 101 (1008)
Q Consensus 78 ~~~~~~d~~lG~~~i~l~~l~~~~ 101 (1008)
+.+ ++++||++.+++.++....
T Consensus 94 ~~~--~~~~iG~~~i~l~~l~~~~ 115 (123)
T cd04035 94 DRF--GNDFLGETRIPLKKLKPNQ 115 (123)
T ss_pred CCc--CCeeEEEEEEEcccCCCCc
Confidence 876 6889999999999987543
No 186
>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s
Probab=99.53 E-value=3.9e-14 Score=134.99 Aligned_cols=101 Identities=30% Similarity=0.403 Sum_probs=86.0
Q ss_pred ccccccCcCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-------eEEEeeeecCCCCCeEeeEEEEEeccC---
Q 001830 261 RASTYDLVEQMRYLFVRVVKARDLPSKDVTGSLDPFVEVKVGN-------YKGITKYYEKKQNPEWNEVFAFSRERI--- 330 (1008)
Q Consensus 261 ~~~~~~~~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~-------~~~kT~~~~~t~nP~w~e~f~f~~~~~--- 330 (1008)
+++.|+. ..+.|.|+|++|++|+..+..|.+||||+|++.+ ..++|+++++|.||+|||+|.|.+...
T Consensus 7 ~~l~y~~--~~~~L~V~Vi~A~~L~~~~~~g~~dPyv~v~l~~~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~~~ 84 (133)
T cd04009 7 VKAYYRA--SEQSLRVEILNARNLLPLDSNGSSDPFVKVELLPRHLFPDVPTPKTQVKKKTLFPLFDESFEFNVPPEQCS 84 (133)
T ss_pred EEEEEcC--CCCEEEEEEEEeeCCCCcCCCCCCCCEEEEEEECCCcCccccccccccCcCCCCCccCCEEEEEechhhcc
Confidence 3455543 4568999999999999998889999999999963 468999999999999999999998542
Q ss_pred -CcCeEEEEEEecC-CCCCeeeEEEEEEccccCCC
Q 001830 331 -QSSVLEVAVKDKD-VVKDDYVGLVRFDLNEVPTR 363 (1008)
Q Consensus 331 -~~~~l~i~V~d~d-~~~d~~lG~~~i~l~~l~~~ 363 (1008)
....|.|+|||++ .+++++||++.++|.++...
T Consensus 85 ~~~~~l~~~V~d~d~~~~d~~iG~~~i~l~~l~~~ 119 (133)
T cd04009 85 VEGALLLFTVKDYDLLGSNDFEGEAFLPLNDIPGV 119 (133)
T ss_pred cCCCEEEEEEEecCCCCCCcEeEEEEEeHHHCCcc
Confidence 3568999999999 66799999999999999853
No 187
>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.52 E-value=2.1e-14 Score=137.77 Aligned_cols=114 Identities=26% Similarity=0.443 Sum_probs=92.4
Q ss_pred cccccccCcCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEEC--C---eEEEeeeecCCCCCeEeeEEEEEec--cCCc
Q 001830 260 LRASTYDLVEQMRYLFVRVVKARDLPSKDVTGSLDPFVEVKVG--N---YKGITKYYEKKQNPEWNEVFAFSRE--RIQS 332 (1008)
Q Consensus 260 ~~~~~~~~~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~--~---~~~kT~~~~~t~nP~w~e~f~f~~~--~~~~ 332 (1008)
.++++|+. ..+.|.|+|++|+||...+..|.+||||++++. + .+++|++++++.||.|||+|.|.+. ....
T Consensus 5 ~~sl~y~~--~~~~L~v~vi~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~~kT~v~~~t~~P~wne~F~f~i~~~~~~~ 82 (136)
T cd08405 5 LLSLCYNP--TANRITVNIIKARNLKAMDINGTSDPYVKVWLMYKDKRVEKKKTVIKKRTLNPVFNESFIFNIPLERLRE 82 (136)
T ss_pred EEEEEEcC--CCCeEEEEEEEeeCCCccccCCCCCceEEEEEEeCCCccccccCcceeCCCCCcccceEEEeCCHHHhCC
Confidence 45667764 346899999999999998888999999999983 2 3578999999999999999999874 3345
Q ss_pred CeEEEEEEecC-CCCCeeeEEEEEEccccCCCCCCCCCCccEEEEeecCCC
Q 001830 333 SVLEVAVKDKD-VVKDDYVGLVRFDLNEVPTRVPPDSPLAAEWYRLEDRKG 382 (1008)
Q Consensus 333 ~~l~i~V~d~d-~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~ 382 (1008)
..|.|+|||++ .+++++||++.+++.+.. ....+|+.+...++
T Consensus 83 ~~l~~~v~d~~~~~~~~~lG~~~i~~~~~~-------~~~~~w~~~~~~~~ 126 (136)
T cd08405 83 TTLIITVMDKDRLSRNDLIGKIYLGWKSGG-------LELKHWKDMLSKPR 126 (136)
T ss_pred CEEEEEEEECCCCCCCcEeEEEEECCccCC-------chHHHHHHHHhCCC
Confidence 68999999998 678999999999998762 23467777665544
No 188
>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin
Probab=99.52 E-value=2.6e-14 Score=137.16 Aligned_cols=107 Identities=26% Similarity=0.404 Sum_probs=89.9
Q ss_pred CCceEEEEEEEeeCCCCCCCCCCCCcEEEEEECCe-----eeccccCCCCCCCeeeeEEEEEecCCCCCCCceEEEEEEe
Q 001830 2 SHLKLGVEVVSAYELMPKDGQGSSNAFVELHFDGQ-----KFRTTTKEKDLTPVWNESFYFNISDPHNLSNLALDAYVYN 76 (1008)
Q Consensus 2 ~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~-----~~~T~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~~~V~d 76 (1008)
.++.|.|+|++|+||+..+..+.+||||++++.+. +++|++++++.||+|||+|.|.+.. ..+....|.|+|||
T Consensus 12 ~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~~~~P~wne~f~f~i~~-~~l~~~~l~~~v~d 90 (134)
T cd00276 12 TAERLTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLKKKKTSVKKGTLNPVFNEAFSFDVPA-EQLEEVSLVITVVD 90 (134)
T ss_pred CCCEEEEEEEEeeCCCCccCCCCCCcEEEEEEEcCCeEeeeecCcceecCCCCeeeeeEEEECCH-HHhCCcEEEEEEEe
Confidence 35789999999999999998899999999998642 5799999999999999999999854 23345689999999
Q ss_pred CCCCCCCCCeeEEEEEeCcccCCCCCceeEEEecccC
Q 001830 77 HNRTTNSKSFLGKVRLTGTSFVPYSDAVVLHYPLEKR 113 (1008)
Q Consensus 77 ~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~L~~~ 113 (1008)
++.+. ++++||++.+++.+ .+.....|++|...
T Consensus 91 ~~~~~-~~~~lG~~~i~l~~---~~~~~~~W~~l~~~ 123 (134)
T cd00276 91 KDSVG-RNEVIGQVVLGPDS---GGEELEHWNEMLAS 123 (134)
T ss_pred cCCCC-CCceeEEEEECCCC---CCcHHHHHHHHHhC
Confidence 98764 78999999999988 34445668888765
No 189
>cd04048 C2A_Copine C2 domain first repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma
Probab=99.51 E-value=6.6e-14 Score=131.04 Aligned_cols=98 Identities=23% Similarity=0.262 Sum_probs=80.7
Q ss_pred EEEEeeCCCCCCCCCCCCcEEEEEECCee-------eccccCCCCCCCeeeeEEEEEecCCCCCCCceEEEEEEeCCCC-
Q 001830 9 EVVSAYELMPKDGQGSSNAFVELHFDGQK-------FRTTTKEKDLTPVWNESFYFNISDPHNLSNLALDAYVYNHNRT- 80 (1008)
Q Consensus 9 ~v~~a~~L~~~d~~g~~dPyv~v~~~~~~-------~~T~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~~~V~d~~~~- 80 (1008)
-.++|++|+++|..|.+||||+|++.+.. ++|+++++++||+|||+|.|.+... ....|.|+|||+|..
T Consensus 5 ~~i~a~~L~~~d~~g~~DPyv~v~~~~~~~~~~~~~~kT~vi~~t~nP~wne~f~f~~~~~---~~~~l~~~V~d~d~~~ 81 (120)
T cd04048 5 LSISCRNLLDKDVLSKSDPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVTTFTVDYYFE---EVQKLRFEVYDVDSKS 81 (120)
T ss_pred EEEEccCCCCCCCCCCCCcEEEEEEEcCCCCceEEeccEeEeCCCCCCCceEEEEEEEEeE---eeeEEEEEEEEecCCc
Confidence 45899999999999999999999997653 8999999999999999999986421 234799999999871
Q ss_pred --CCCCCeeEEEEEeCcccCCCCCceeEEEec
Q 001830 81 --TNSKSFLGKVRLTGTSFVPYSDAVVLHYPL 110 (1008)
Q Consensus 81 --~~~d~~lG~~~i~l~~l~~~~~~~~~~~~L 110 (1008)
.++|++||++.+++.++..... ...|++|
T Consensus 82 ~~~~~~d~iG~~~i~l~~l~~~~~-~~~~~~l 112 (120)
T cd04048 82 KDLSDHDFLGEAECTLGEIVSSPG-QKLTLPL 112 (120)
T ss_pred CCCCCCcEEEEEEEEHHHHhcCCC-cEEEEEc
Confidence 3488999999999999875433 3347888
No 190
>cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein. The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr
Probab=99.50 E-value=3.9e-13 Score=121.08 Aligned_cols=98 Identities=19% Similarity=0.343 Sum_probs=73.6
Q ss_pred EEEEEEeecCCCCCccCCCCCCCCeEEEEEECC-----EEEEeeeecCCCCcccccEEEEEeeCCCceEEEEEEeCCC-C
Q 001830 602 LELGILNADGLHPMKTRDGRGTADTYCVAKYGH-----KWVRTRTIINSLSAKYNEQYTWEVYDPATVLTVGVFDNSH-I 675 (1008)
Q Consensus 602 L~v~v~~a~~L~~~~~~~~~g~~dpyv~~~~~~-----~~~~T~~~~~~~nP~wne~f~~~v~~~~~~l~i~V~d~~~-~ 675 (1008)
|.|+|.+|+||+ +.+||||++.+++ ..++|+++++|+||+|||.|+|++.. ...|.+.|||++. .
T Consensus 1 L~V~V~~A~~L~--------~~sDPYV~l~v~~~~~~~~~~KTk~i~~TlnPvWnE~F~i~l~~-s~~L~~~v~d~~~~~ 71 (118)
T cd08686 1 LNVIVHSAQGFK--------QSANLYCTLEVDSFGYFVKKAKTRVCRDTTEPNWNEEFEIELEG-SQTLRILCYEKCYSK 71 (118)
T ss_pred CEEEEEeCCCCC--------CCCCCEEEEEEcCccccceeeeeeeecCCCCCccceEEEEEeCC-CCEEEEEEEEccccc
Confidence 579999999997 4589999998853 35899999999999999999999864 6689999999831 0
Q ss_pred -CCCCCCCCceeEEEEEEccc--ccCCCeEEeeEee
Q 001830 676 -GGSSGSKDVKIGKVRIRIST--LETGRVYTHSYPL 708 (1008)
Q Consensus 676 -~~~~~~~d~~lG~~~i~l~~--l~~~~~~~~~~~L 708 (1008)
......+|+++|++.|.|+. +......+..+.|
T Consensus 72 ~~~d~~~~d~~~G~g~i~Ld~~~~~~~~~~~~~~~~ 107 (118)
T cd08686 72 VKLDGEGTDAIMGKGQIQLDPQSLQTKKWQEKVISM 107 (118)
T ss_pred ccccccCcccEEEEEEEEECHHHhccCCeeEEEEEe
Confidence 00122389999888887754 4444444444555
No 191
>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma. A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd
Probab=99.50 E-value=1.5e-13 Score=130.97 Aligned_cols=113 Identities=29% Similarity=0.460 Sum_probs=95.3
Q ss_pred ccccccCcCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eEEEeeeecCCCCCeEeeEEEEEeccC-CcCe
Q 001830 261 RASTYDLVEQMRYLFVRVVKARDLPSKDVTGSLDPFVEVKVGN-----YKGITKYYEKKQNPEWNEVFAFSRERI-QSSV 334 (1008)
Q Consensus 261 ~~~~~~~~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~-----~~~kT~~~~~t~nP~w~e~f~f~~~~~-~~~~ 334 (1008)
++..|+. +.|+|+|++|++|+..+..+.+||||+|.+.+ ..++|++++++.||.|||+|.|.+... ....
T Consensus 6 ~~~~~~~----~~l~v~i~~a~nL~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~wne~f~~~~~~~~~~~~ 81 (131)
T cd04026 6 LKISVKD----NKLTVEVREAKNLIPMDPNGLSDPYVKLKLIPDPKNETKQKTKTIKKTLNPVWNETFTFDLKPADKDRR 81 (131)
T ss_pred EEEEECC----CEEEEEEEEeeCCCCcCCCCCCCCcEEEEEEcCCCCCceecceeecCCCCCCccceEEEeCCchhcCCE
Confidence 3445543 68999999999999988888999999999963 578999999999999999999997653 3468
Q ss_pred EEEEEEecC-CCCCeeeEEEEEEccccCCCCCCCCCCccEEEEeecCCCC
Q 001830 335 LEVAVKDKD-VVKDDYVGLVRFDLNEVPTRVPPDSPLAAEWYRLEDRKGE 383 (1008)
Q Consensus 335 l~i~V~d~d-~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~ 383 (1008)
|.|+|||++ .+++++||++.+++.++... ....||+|.+...+
T Consensus 82 l~v~v~d~~~~~~~~~iG~~~~~l~~l~~~------~~~~w~~L~~~~~~ 125 (131)
T cd04026 82 LSIEVWDWDRTTRNDFMGSLSFGVSELIKM------PVDGWYKLLNQEEG 125 (131)
T ss_pred EEEEEEECCCCCCcceeEEEEEeHHHhCcC------ccCceEECcCcccc
Confidence 999999998 57899999999999999853 35789999876553
No 192
>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin
Probab=99.50 E-value=4.1e-14 Score=135.83 Aligned_cols=105 Identities=25% Similarity=0.399 Sum_probs=89.3
Q ss_pred ceeEEEEEEEeecCCCCCccCCCCCCCCeEEEEEECC-----EEEEeeeecCCCCcccccEEEEEeeCC---CceEEEEE
Q 001830 598 SIGVLELGILNADGLHPMKTRDGRGTADTYCVAKYGH-----KWVRTRTIINSLSAKYNEQYTWEVYDP---ATVLTVGV 669 (1008)
Q Consensus 598 ~~g~L~v~v~~a~~L~~~~~~~~~g~~dpyv~~~~~~-----~~~~T~~~~~~~nP~wne~f~~~v~~~---~~~l~i~V 669 (1008)
..+.|.|.|++|+||+.. +..+.+||||++.+.+ ...+|+++.++.||.|||+|.|.+... ...|.|+|
T Consensus 12 ~~~~L~V~v~~a~~L~~~---~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~~~~P~wne~f~f~i~~~~l~~~~l~~~v 88 (134)
T cd00276 12 TAERLTVVVLKARNLPPS---DGKGLSDPYVKVSLLQGGKKLKKKKTSVKKGTLNPVFNEAFSFDVPAEQLEEVSLVITV 88 (134)
T ss_pred CCCEEEEEEEEeeCCCCc---cCCCCCCcEEEEEEEcCCeEeeeecCcceecCCCCeeeeeEEEECCHHHhCCcEEEEEE
Confidence 347899999999999965 3577899999999854 256999999999999999999998764 46899999
Q ss_pred EeCCCCCCCCCCCCceeEEEEEEcccccCCCeEEeeEeeeecC
Q 001830 670 FDNSHIGGSSGSKDVKIGKVRIRISTLETGRVYTHSYPLLVLH 712 (1008)
Q Consensus 670 ~d~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~ 712 (1008)
||++.++ ++++||.+.+++++ .+...++|++|....
T Consensus 89 ~d~~~~~-----~~~~lG~~~i~l~~--~~~~~~~W~~l~~~~ 124 (134)
T cd00276 89 VDKDSVG-----RNEVIGQVVLGPDS--GGEELEHWNEMLASP 124 (134)
T ss_pred EecCCCC-----CCceeEEEEECCCC--CCcHHHHHHHHHhCC
Confidence 9998765 89999999999999 566678999997554
No 193
>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.48 E-value=2e-13 Score=125.61 Aligned_cols=101 Identities=25% Similarity=0.445 Sum_probs=85.6
Q ss_pred CCCCCCcEEEEEECCe-EEEeeeecCCCCCeEeeEEEEEeccCCcCeEEEEEEecCCCCCeeeEEEEEEccccCCCCCCC
Q 001830 289 VTGSLDPFVEVKVGNY-KGITKYYEKKQNPEWNEVFAFSRERIQSSVLEVAVKDKDVVKDDYVGLVRFDLNEVPTRVPPD 367 (1008)
Q Consensus 289 ~~g~~dpyv~v~~~~~-~~kT~~~~~t~nP~w~e~f~f~~~~~~~~~l~i~V~d~d~~~d~~lG~~~i~l~~l~~~~~~~ 367 (1008)
.+|.+||||++.++++ ..+|++++++.||.|||.|.|.+.+.....|.|.|||++..++++||.+.++|.++...
T Consensus 9 ~~G~~dPYv~v~v~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~~d~~iG~~~v~L~~l~~~---- 84 (111)
T cd04052 9 KTGLLSPYAELYLNGKLVYTTRVKKKTNNPSWNASTEFLVTDRRKSRVTVVVKDDRDRHDPVLGSVSISLNDLIDA---- 84 (111)
T ss_pred cCCCCCceEEEEECCEEEEEEeeeccCCCCccCCceEEEecCcCCCEEEEEEEECCCCCCCeEEEEEecHHHHHhh----
Confidence 4688999999999885 57999999999999999999999877677899999999933999999999999999653
Q ss_pred CCCccEEEEeecCCCCccceEEEEEEEEec
Q 001830 368 SPLAAEWYRLEDRKGEKKKGELMLAVWYGT 397 (1008)
Q Consensus 368 ~~~~~~w~~L~~~~~~~~~G~i~l~~~~~~ 397 (1008)
......||+|.+. ..|+|++++.|.|
T Consensus 85 ~~~~~~w~~L~~~----~~G~i~~~~~~~p 110 (111)
T cd04052 85 TSVGQQWFPLSGN----GQGRIRISALWKP 110 (111)
T ss_pred hhccceeEECCCC----CCCEEEEEEEEec
Confidence 1335799999862 3499999998865
No 194
>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind
Probab=99.48 E-value=1.6e-13 Score=131.18 Aligned_cols=115 Identities=26% Similarity=0.377 Sum_probs=91.4
Q ss_pred cccccccCcCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eEEEeeeecCCCCCeEeeEEEEEecc--CCc
Q 001830 260 LRASTYDLVEQMRYLFVRVVKARDLPSKDVTGSLDPFVEVKVGN-----YKGITKYYEKKQNPEWNEVFAFSRER--IQS 332 (1008)
Q Consensus 260 ~~~~~~~~~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~-----~~~kT~~~~~t~nP~w~e~f~f~~~~--~~~ 332 (1008)
.+++.|+ +..+.|+|+|++|++|+.++..|.+||||+|++.. .+++|++++++.||.|||+|.|.+.. ...
T Consensus 4 ~~~~~y~--~~~~~L~V~v~~A~~L~~~d~~g~~dpyvkv~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~~~~ 81 (134)
T cd08403 4 MFSLCYL--PTAGRLTLTIIKARNLKAMDITGFSDPYVKVSLMCEGRRLKKKKTSVKKNTLNPTYNEALVFDVPPENVDN 81 (134)
T ss_pred EEEEEEc--CCCCEEEEEEEEeeCCCccccCCCCCceEEEEEEeCCcccceecCCcccCCCCCcccceEEEECCHHHhCC
Confidence 3466666 34579999999999999999899999999999842 25689999999999999999998743 344
Q ss_pred CeEEEEEEecC-CCCCeeeEEEEEEccccCCCCCCCCCCccEEEEeecCCCC
Q 001830 333 SVLEVAVKDKD-VVKDDYVGLVRFDLNEVPTRVPPDSPLAAEWYRLEDRKGE 383 (1008)
Q Consensus 333 ~~l~i~V~d~d-~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~ 383 (1008)
..|.|+|||++ .+++++||++.+++.... ....+|+.+...++.
T Consensus 82 ~~l~~~v~d~~~~~~~~~IG~~~l~~~~~~-------~~~~~w~~~~~~~~~ 126 (134)
T cd08403 82 VSLIIAVVDYDRVGHNELIGVCRVGPNADG-------QGREHWNEMLANPRK 126 (134)
T ss_pred CEEEEEEEECCCCCCCceeEEEEECCCCCC-------chHHHHHHHHHCCCC
Confidence 57999999999 678999999999876322 234577777655443
No 195
>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC). PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking
Probab=99.46 E-value=1.1e-12 Score=124.76 Aligned_cols=115 Identities=28% Similarity=0.434 Sum_probs=95.8
Q ss_pred EEEEEEEEeecCCCCC--CCCCCCcEEEEEEC------CeEEEeeeecCCC-CCeEeeEEEEEeccCCcCeEEEEEEecC
Q 001830 273 YLFVRVVKARDLPSKD--VTGSLDPFVEVKVG------NYKGITKYYEKKQ-NPEWNEVFAFSRERIQSSVLEVAVKDKD 343 (1008)
Q Consensus 273 ~L~V~v~~a~~L~~~d--~~g~~dpyv~v~~~------~~~~kT~~~~~t~-nP~w~e~f~f~~~~~~~~~l~i~V~d~d 343 (1008)
.|+|+|++|+||+..+ ..+.+||||++++. ..+++|+++.++. ||.|||+|.|.+.......|.|+|||++
T Consensus 3 ~l~v~vi~a~~L~~~~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~~P~w~e~f~f~~~~~~~~~l~~~V~d~~ 82 (128)
T cd00275 3 TLTIKIISGQQLPKPKGDKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFEFDVTVPELAFLRFVVYDED 82 (128)
T ss_pred EEEEEEEeeecCCCCCCCCCCccCCEEEEEEEeCCCCCCCcEeeeeecCCCcCCccCCcEEEEEeCCCeEEEEEEEEeCC
Confidence 6899999999999887 57889999999994 4568999988765 9999999999987655568999999998
Q ss_pred CCCCeeeEEEEEEccccCCCCCCCCCCccEEEEeecCCCC-ccceEEEEEEEE
Q 001830 344 VVKDDYVGLVRFDLNEVPTRVPPDSPLAAEWYRLEDRKGE-KKKGELMLAVWY 395 (1008)
Q Consensus 344 ~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~-~~~G~i~l~~~~ 395 (1008)
..++++||++.+++.++..+ ..|++|.+..+. ...|.|.+.+++
T Consensus 83 ~~~~~~iG~~~~~l~~l~~g--------~~~~~l~~~~~~~~~~~~l~v~~~~ 127 (128)
T cd00275 83 SGDDDFLGQACLPLDSLRQG--------YRHVPLLDSKGEPLELSTLFVHIDI 127 (128)
T ss_pred CCCCcEeEEEEEEhHHhcCc--------eEEEEecCCCCCCCcceeEEEEEEE
Confidence 44999999999999999643 478999877665 256888887764
No 196
>cd04048 C2A_Copine C2 domain first repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma
Probab=99.46 E-value=4.4e-13 Score=125.49 Aligned_cols=97 Identities=27% Similarity=0.346 Sum_probs=82.6
Q ss_pred EEEeecCCCCCCCCCCCcEEEEEECCe-------EEEeeeecCCCCCeEeeEEEEEeccCCcCeEEEEEEecC-----CC
Q 001830 278 VVKARDLPSKDVTGSLDPFVEVKVGNY-------KGITKYYEKKQNPEWNEVFAFSRERIQSSVLEVAVKDKD-----VV 345 (1008)
Q Consensus 278 v~~a~~L~~~d~~g~~dpyv~v~~~~~-------~~kT~~~~~t~nP~w~e~f~f~~~~~~~~~l~i~V~d~d-----~~ 345 (1008)
.++|++|+..+..|.+||||++++.+. .++|++++++.||+|||+|.|.+.......|.|+|||+| .+
T Consensus 6 ~i~a~~L~~~d~~g~~DPyv~v~~~~~~~~~~~~~~kT~vi~~t~nP~wne~f~f~~~~~~~~~l~~~V~d~d~~~~~~~ 85 (120)
T cd04048 6 SISCRNLLDKDVLSKSDPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVTTFTVDYYFEEVQKLRFEVYDVDSKSKDLS 85 (120)
T ss_pred EEEccCCCCCCCCCCCCcEEEEEEEcCCCCceEEeccEeEeCCCCCCCceEEEEEEEEeEeeeEEEEEEEEecCCcCCCC
Confidence 478999999998899999999999765 389999999999999999999865444568999999998 46
Q ss_pred CCeeeEEEEEEccccCCCCCCCCCCccEEEEeec
Q 001830 346 KDDYVGLVRFDLNEVPTRVPPDSPLAAEWYRLED 379 (1008)
Q Consensus 346 ~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~ 379 (1008)
++++||++.+++.++... .....|+.|..
T Consensus 86 ~~d~iG~~~i~l~~l~~~-----~~~~~~~~l~~ 114 (120)
T cd04048 86 DHDFLGEAECTLGEIVSS-----PGQKLTLPLKG 114 (120)
T ss_pred CCcEEEEEEEEHHHHhcC-----CCcEEEEEccC
Confidence 899999999999999864 34567888844
No 197
>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.45 E-value=5.8e-13 Score=125.43 Aligned_cols=102 Identities=28% Similarity=0.421 Sum_probs=85.4
Q ss_pred cccccccCcCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eEEEeeeecCCCCCeEeeEEEEE-ec--cCC
Q 001830 260 LRASTYDLVEQMRYLFVRVVKARDLPSKDVTGSLDPFVEVKVGN-----YKGITKYYEKKQNPEWNEVFAFS-RE--RIQ 331 (1008)
Q Consensus 260 ~~~~~~~~~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~-----~~~kT~~~~~t~nP~w~e~f~f~-~~--~~~ 331 (1008)
.+++.|+. ..+.|.|+|++|++|+..+..+.+||||++.+.+ ...+|++++++.||.|||+|.|. +. +..
T Consensus 5 ~~~l~y~~--~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~Wne~f~f~~~~~~~~~ 82 (123)
T cd04035 5 EFTLLYDP--ANSALHCTIIRAKGLKAMDANGLSDPYVKLNLLPGASKATKLRTKTVHKTRNPEFNETLTYYGITEEDIQ 82 (123)
T ss_pred EEEEEEeC--CCCEEEEEEEEeeCCCCCCCCCCCCceEEEEEecCCCCCCceeeeeecCCCCCCccceEEEcCCCHHHhC
Confidence 45666764 3468999999999999988888999999999842 36899999999999999999996 32 334
Q ss_pred cCeEEEEEEecCCCCCeeeEEEEEEccccCCC
Q 001830 332 SSVLEVAVKDKDVVKDDYVGLVRFDLNEVPTR 363 (1008)
Q Consensus 332 ~~~l~i~V~d~d~~~d~~lG~~~i~l~~l~~~ 363 (1008)
...|.|+|||++..++++||++.+++.++..+
T Consensus 83 ~~~l~~~v~d~~~~~~~~iG~~~i~l~~l~~~ 114 (123)
T cd04035 83 RKTLRLLVLDEDRFGNDFLGETRIPLKKLKPN 114 (123)
T ss_pred CCEEEEEEEEcCCcCCeeEEEEEEEcccCCCC
Confidence 56899999999833899999999999999865
No 198
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.44 E-value=2.3e-13 Score=173.04 Aligned_cols=118 Identities=24% Similarity=0.438 Sum_probs=101.6
Q ss_pred CceeEEEEEEEeecCCCCCccCCCCCCCCeEEEEEECCE-EEEeeeecCCCCcccccEEEEEeeCCC--ceEEEEEEeCC
Q 001830 597 PSIGVLELGILNADGLHPMKTRDGRGTADTYCVAKYGHK-WVRTRTIINSLSAKYNEQYTWEVYDPA--TVLTVGVFDNS 673 (1008)
Q Consensus 597 ~~~g~L~v~v~~a~~L~~~~~~~~~g~~dpyv~~~~~~~-~~~T~~~~~~~nP~wne~f~~~v~~~~--~~l~i~V~d~~ 673 (1008)
.-.|.|.|+|++|+||. +..|.+||||++.+|++ +.||++++++.||+|||.|+|.+.+|. .+|+|+|||+|
T Consensus 1977 ~~~G~L~V~V~~a~nl~-----~~~~~sdPyv~l~~g~~~~~kTkvvk~~~nP~Wne~f~~~~~~p~~~~~l~iev~d~d 2051 (2102)
T PLN03200 1977 CLPGSLTVTIKRGNNLK-----QSMGNTNAFCKLTLGNGPPRQTKVVSHSSSPEWKEGFTWAFDSPPKGQKLHISCKSKN 2051 (2102)
T ss_pred hCCcceEEEEeeccccc-----cccCCCCCeEEEEECCCCcccccccCCCCCCCcccceeeeecCCCCCCceEEEEEecC
Confidence 44699999999999998 23689999999999965 789999999999999999999998875 78999999999
Q ss_pred CCCCCCCCCCceeEEEEEEcccccCCCeEEeeEeeeecCCCCCccccE---EEEEEEEE
Q 001830 674 HIGGSSGSKDVKIGKVRIRISTLETGRVYTHSYPLLVLHPSGVKKMGE---LHLAIRFS 729 (1008)
Q Consensus 674 ~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~G~---i~l~~~f~ 729 (1008)
.++ ++.||++.|+|.++..++.+..||+|... | +|.|+ |+++++++
T Consensus 2052 ~f~------kd~~G~~~i~l~~vv~~~~~~~~~~L~~~---~-~k~G~~~~~~~e~~w~ 2100 (2102)
T PLN03200 2052 TFG------KSSLGKVTIQIDRVVMEGTYSGEYSLNPE---S-NKDGSSRTLEIEFQWS 2100 (2102)
T ss_pred ccC------CCCCceEEEEHHHHhcCceeeeeeecCcc---c-ccCCCcceEEEEEEec
Confidence 876 45999999999999999999999999732 2 34577 88877653
No 199
>PLN03008 Phospholipase D delta
Probab=99.44 E-value=7.1e-13 Score=154.09 Aligned_cols=123 Identities=24% Similarity=0.429 Sum_probs=103.5
Q ss_pred eEEEEEEEEeecCCCCCC------------------------------------------CCCCCcEEEEEECCe-EEEe
Q 001830 272 RYLFVRVVKARDLPSKDV------------------------------------------TGSLDPFVEVKVGNY-KGIT 308 (1008)
Q Consensus 272 ~~L~V~v~~a~~L~~~d~------------------------------------------~g~~dpyv~v~~~~~-~~kT 308 (1008)
|.|.|+|.+|++|+.+|. .+++||||+|.++++ ..||
T Consensus 14 g~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tSDPYV~I~Lg~~rv~RT 93 (868)
T PLN03008 14 GDLDLKIVKARRLPNMDMFSEHLRRLFTACNACARPTDTDDVDPRDKGEFGDKNIRSHRKVITSDPYVTVVVPQATLART 93 (868)
T ss_pred cccEEEEEEcccCCchhHHHHHHHhhcccccccccccccccccccccccccccccccccccCCCCceEEEEECCcceeeE
Confidence 679999999999875221 246899999999876 4699
Q ss_pred eeecCCCCCeEeeEEEEEeccCCcCeEEEEEEecCCCCCeeeEEEEEEccccCCCCCCCCCCccEEEEeecCCCCc--cc
Q 001830 309 KYYEKKQNPEWNEVFAFSRERIQSSVLEVAVKDKDVVKDDYVGLVRFDLNEVPTRVPPDSPLAAEWYRLEDRKGEK--KK 386 (1008)
Q Consensus 309 ~~~~~t~nP~w~e~f~f~~~~~~~~~l~i~V~d~d~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~--~~ 386 (1008)
++++++.||+|||+|.|.+.+.. ..|.|+|+|+|..++++||++.|++.++..+ .....|++|.+..+.. ..
T Consensus 94 rVi~n~~NPvWNE~F~f~vah~~-s~L~f~VkD~D~~gaD~IG~a~IPL~~L~~G-----e~vd~Wl~Ll~~~~kp~k~~ 167 (868)
T PLN03008 94 RVLKNSQEPLWDEKFNISIAHPF-AYLEFQVKDDDVFGAQIIGTAKIPVRDIASG-----ERISGWFPVLGASGKPPKAE 167 (868)
T ss_pred EeCCCCCCCCcceeEEEEecCCC-ceEEEEEEcCCccCCceeEEEEEEHHHcCCC-----CceEEEEEccccCCCCCCCC
Confidence 99999999999999999998864 5899999999955679999999999999876 4467999999876654 45
Q ss_pred eEEEEEEEEeccCC
Q 001830 387 GELMLAVWYGTQAD 400 (1008)
Q Consensus 387 G~i~l~~~~~~~~~ 400 (1008)
|.|+++++|.+...
T Consensus 168 ~kl~v~lqf~pv~~ 181 (868)
T PLN03008 168 TAIFIDMKFTPFDQ 181 (868)
T ss_pred cEEEEEEEEEEccc
Confidence 79999999988654
No 200
>cd04047 C2B_Copine C2 domain second repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom
Probab=99.43 E-value=4.4e-13 Score=123.53 Aligned_cols=90 Identities=22% Similarity=0.343 Sum_probs=74.3
Q ss_pred EEEEEEeeCCCCCCCCCCCCcEEEEEECCe------eeccccCCCCCCCeeeeEEEEEecCCCC-CCCceEEEEEEeCCC
Q 001830 7 GVEVVSAYELMPKDGQGSSNAFVELHFDGQ------KFRTTTKEKDLTPVWNESFYFNISDPHN-LSNLALDAYVYNHNR 79 (1008)
Q Consensus 7 ~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~------~~~T~~~~~t~nP~Wne~f~f~v~~~~~-~~~~~l~~~V~d~~~ 79 (1008)
.+-.++|++|+..|..|.+||||+|++.++ .++|+++++++||+|| +|.|.+..... -....|.|+|||++.
T Consensus 3 ~~~~i~a~~L~~~d~~~~~DPyv~v~~~~~~~~~~~~~kT~vi~~t~nP~Wn-~f~~~~~~l~~~~~~~~l~~~V~d~d~ 81 (110)
T cd04047 3 VELQFSGKKLDKKDFFGKSDPFLEISRQSEDGTWVLVYRTEVIKNTLNPVWK-PFTIPLQKLCNGDYDRPIKIEVYDYDS 81 (110)
T ss_pred EEEEEEeCCCCCCCCCCCCCeeEEEEEECCCCCEEEEEeeeEeccCCCCceE-EEEEEHHHhcCCCcCCEEEEEEEEeCC
Confidence 455679999999999999999999998643 4899999999999999 78887532111 113589999999988
Q ss_pred CCCCCCeeEEEEEeCcccC
Q 001830 80 TTNSKSFLGKVRLTGTSFV 98 (1008)
Q Consensus 80 ~~~~d~~lG~~~i~l~~l~ 98 (1008)
.+ +|++||++.+++.++.
T Consensus 82 ~~-~d~~iG~~~~~l~~l~ 99 (110)
T cd04047 82 SG-KHDLIGEFETTLDELL 99 (110)
T ss_pred CC-CCcEEEEEEEEHHHHh
Confidence 75 7899999999999986
No 201
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.40 E-value=8e-13 Score=168.27 Aligned_cols=117 Identities=24% Similarity=0.308 Sum_probs=97.4
Q ss_pred ceEEEEEEEeeCCCCCCCCCCCCcEEEEEECCe-eeccccCCCCCCCeeeeEEEEEecCCCCCCCceEEEEEEeCCCCCC
Q 001830 4 LKLGVEVVSAYELMPKDGQGSSNAFVELHFDGQ-KFRTTTKEKDLTPVWNESFYFNISDPHNLSNLALDAYVYNHNRTTN 82 (1008)
Q Consensus 4 ~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~-~~~T~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~~~V~d~~~~~~ 82 (1008)
+.|.|+|++|+||. +..|++||||+++++++ +++|++++++.||+|||.|+|.+.++. .+..|+|+|||+|.|
T Consensus 1980 G~L~V~V~~a~nl~--~~~~~sdPyv~l~~g~~~~~kTkvvk~~~nP~Wne~f~~~~~~p~--~~~~l~iev~d~d~f-- 2053 (2102)
T PLN03200 1980 GSLTVTIKRGNNLK--QSMGNTNAFCKLTLGNGPPRQTKVVSHSSSPEWKEGFTWAFDSPP--KGQKLHISCKSKNTF-- 2053 (2102)
T ss_pred cceEEEEeeccccc--cccCCCCCeEEEEECCCCcccccccCCCCCCCcccceeeeecCCC--CCCceEEEEEecCcc--
Confidence 68999999999998 44689999999999966 789999999999999999999886653 235799999999988
Q ss_pred CCCeeEEEEEeCcccCCCCCceeEEEecccCCCCcccceE---EEEEEEee
Q 001830 83 SKSFLGKVRLTGTSFVPYSDAVVLHYPLEKRSIFSRVKGE---LGLKVFVT 130 (1008)
Q Consensus 83 ~d~~lG~~~i~l~~l~~~~~~~~~~~~L~~~~~~~~~~G~---i~~~~~~~ 130 (1008)
.++.||.+.|++.++...+... .||+|.+++. ..|. |.+.+.|.
T Consensus 2054 ~kd~~G~~~i~l~~vv~~~~~~-~~~~L~~~~~---k~G~~~~~~~e~~w~ 2100 (2102)
T PLN03200 2054 GKSSLGKVTIQIDRVVMEGTYS-GEYSLNPESN---KDGSSRTLEIEFQWS 2100 (2102)
T ss_pred CCCCCceEEEEHHHHhcCceee-eeeecCcccc---cCCCcceEEEEEEec
Confidence 3559999999999998765544 4999987532 3467 88888764
No 202
>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=99.36 E-value=1.2e-13 Score=152.87 Aligned_cols=123 Identities=27% Similarity=0.473 Sum_probs=104.5
Q ss_pred ceEEEEEEEeeCCCCCCCCCCCCcEEEEEEC--------------------------C-----eeeccccCCCCCCCeee
Q 001830 4 LKLGVEVVSAYELMPKDGQGSSNAFVELHFD--------------------------G-----QKFRTTTKEKDLTPVWN 52 (1008)
Q Consensus 4 ~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~--------------------------~-----~~~~T~~~~~t~nP~Wn 52 (1008)
..+.|.+..|+||.++|.+|.||||+...+- | -.+.|.++++|+||+|+
T Consensus 114 ~~l~is~~~ak~l~akd~ngfSdP~~m~g~~p~~~~~~~pra~~eqrdgl~~~~~~~GpiPAKlIkatsvk~~TLnPkW~ 193 (1103)
T KOG1328|consen 114 VLLNISLLEAKDLIAKDVNGFSDPFAMMGVVPGTRKENSPRALHEQRDGLMHRFQDTGPIPAKLIKATSVKKKTLNPKWS 193 (1103)
T ss_pred HHHHHHHHHhcCccccCCCCCCChhhhhccccccccccChhhhhhhhhhhhhccccCCCCcHHHhhhcccccccCCcchh
Confidence 4566778899999999999999999998762 0 02568899999999999
Q ss_pred eEEEEEecCCCCCCCceEEEEEEeCCCC--------------------------------CC---CCCeeEEEEEeCccc
Q 001830 53 ESFYFNISDPHNLSNLALDAYVYNHNRT--------------------------------TN---SKSFLGKVRLTGTSF 97 (1008)
Q Consensus 53 e~f~f~v~~~~~~~~~~l~~~V~d~~~~--------------------------------~~---~d~~lG~~~i~l~~l 97 (1008)
|+|.|.+ ++.+...+++.|||+|.. .+ .|||||++.||+.++
T Consensus 194 EkF~F~I---eDv~tDqfHlDIWDHDDe~sv~dAvs~LNeV~G~kG~GRyFKqv~qSARans~d~tDDFLGciNipl~Ei 270 (1103)
T KOG1328|consen 194 EKFQFTI---EDVQTDQFHLDIWDHDDEESVLDAVSSLNEVTGFKGIGRYFKQVTQSARANSDDCTDDFLGCINIPLAEI 270 (1103)
T ss_pred hheeeeh---hccccceeeeecccCCccHHHHHHHHHHhhhhcchhHHHHHHHHHHHHhcCCCccccccccccccchhcC
Confidence 9999998 566778999999999853 22 389999999999999
Q ss_pred CCCCCceeEEEecccCCCCcccceEEEEEEEeec
Q 001830 98 VPYSDAVVLHYPLEKRSIFSRVKGELGLKVFVTD 131 (1008)
Q Consensus 98 ~~~~~~~~~~~~L~~~~~~~~~~G~i~~~~~~~~ 131 (1008)
...+- ..||.|+.++..++|+|.+++++|+..
T Consensus 271 P~~Gl--d~WFkLepRS~~S~VqG~~~LklwLsT 302 (1103)
T KOG1328|consen 271 PPDGL--DQWFKLEPRSDKSKVQGQVKLKLWLST 302 (1103)
T ss_pred CcchH--HHHhccCcccccccccceEEEEEEEee
Confidence 87764 459999999999999999999999866
No 203
>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking. C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A ....
Probab=99.35 E-value=2.6e-12 Score=112.28 Aligned_cols=82 Identities=32% Similarity=0.608 Sum_probs=72.1
Q ss_pred EEEEEEEeeCCCCCCCCCCCCcEEEEEECC---eeeccccCCCCCCCeeeeEEEEEecCCCCCCCceEEEEEEeCCCCCC
Q 001830 6 LGVEVVSAYELMPKDGQGSSNAFVELHFDG---QKFRTTTKEKDLTPVWNESFYFNISDPHNLSNLALDAYVYNHNRTTN 82 (1008)
Q Consensus 6 L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~---~~~~T~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~~~V~d~~~~~~ 82 (1008)
|.|+|++|+||...+..+.+||||++.+++ ..++|++++++.+|.|||+|.|.+.... ...|.|+|||++.+.
T Consensus 1 L~v~I~~a~~L~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~---~~~l~~~V~~~~~~~- 76 (85)
T PF00168_consen 1 LTVTIHSARNLPSKDSNGKPDPYVRVSVNGSESTKYKTKVKKNTSNPVWNEEFEFPLDDPD---LDSLSFEVWDKDSFG- 76 (85)
T ss_dssp EEEEEEEEESSSSSSTTSSBEEEEEEEEETTTCEEEEECCBSSBSSEEEEEEEEEEESHGC---GTEEEEEEEEETSSS-
T ss_pred CEEEEEEEECCCCcccCCcccccceeecceeeeeeeeeeeeeccccceeeeeeeeeeeccc---ccceEEEEEECCCCC-
Confidence 789999999999989889999999999987 5699999999999999999999975432 235999999998775
Q ss_pred CCCeeEEEE
Q 001830 83 SKSFLGKVR 91 (1008)
Q Consensus 83 ~d~~lG~~~ 91 (1008)
+|++||++.
T Consensus 77 ~~~~iG~~~ 85 (85)
T PF00168_consen 77 KDELIGEVK 85 (85)
T ss_dssp SEEEEEEEE
T ss_pred CCCEEEEEC
Confidence 699999974
No 204
>cd04047 C2B_Copine C2 domain second repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom
Probab=99.35 E-value=5.7e-12 Score=116.07 Aligned_cols=87 Identities=24% Similarity=0.371 Sum_probs=74.2
Q ss_pred EEEEEeecCCCCCCCCCCCcEEEEEECCe------EEEeeeecCCCCCeEeeEEEEEeccCC----cCeEEEEEEecC-C
Q 001830 276 VRVVKARDLPSKDVTGSLDPFVEVKVGNY------KGITKYYEKKQNPEWNEVFAFSRERIQ----SSVLEVAVKDKD-V 344 (1008)
Q Consensus 276 V~v~~a~~L~~~d~~g~~dpyv~v~~~~~------~~kT~~~~~t~nP~w~e~f~f~~~~~~----~~~l~i~V~d~d-~ 344 (1008)
+-.++|++|+..|..|.+||||+|++.+. .++|++++++.||+|| +|.|...++. ...|.|+|||++ .
T Consensus 4 ~~~i~a~~L~~~d~~~~~DPyv~v~~~~~~~~~~~~~kT~vi~~t~nP~Wn-~f~~~~~~l~~~~~~~~l~~~V~d~d~~ 82 (110)
T cd04047 4 ELQFSGKKLDKKDFFGKSDPFLEISRQSEDGTWVLVYRTEVIKNTLNPVWK-PFTIPLQKLCNGDYDRPIKIEVYDYDSS 82 (110)
T ss_pred EEEEEeCCCCCCCCCCCCCeeEEEEEECCCCCEEEEEeeeEeccCCCCceE-EEEEEHHHhcCCCcCCEEEEEEEEeCCC
Confidence 34568999999999999999999998653 4899999999999999 7888765432 568999999999 6
Q ss_pred CCCeeeEEEEEEccccCCC
Q 001830 345 VKDDYVGLVRFDLNEVPTR 363 (1008)
Q Consensus 345 ~~d~~lG~~~i~l~~l~~~ 363 (1008)
++|++||++.+++.++...
T Consensus 83 ~~d~~iG~~~~~l~~l~~~ 101 (110)
T cd04047 83 GKHDLIGEFETTLDELLKS 101 (110)
T ss_pred CCCcEEEEEEEEHHHHhcC
Confidence 7899999999999999843
No 205
>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking. C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A ....
Probab=99.29 E-value=1.6e-11 Score=107.29 Aligned_cols=81 Identities=42% Similarity=0.604 Sum_probs=73.0
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECC---eEEEeeeecCCCCCeEeeEEEEEeccCCcCeEEEEEEecC-CCCCee
Q 001830 274 LFVRVVKARDLPSKDVTGSLDPFVEVKVGN---YKGITKYYEKKQNPEWNEVFAFSRERIQSSVLEVAVKDKD-VVKDDY 349 (1008)
Q Consensus 274 L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~---~~~kT~~~~~t~nP~w~e~f~f~~~~~~~~~l~i~V~d~d-~~~d~~ 349 (1008)
|+|+|++|+||...+..+.+||||++.+++ ..++|++++++.+|.|+|+|.|.+.......|.|+|||++ .+++++
T Consensus 1 L~v~I~~a~~L~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~~~V~~~~~~~~~~~ 80 (85)
T PF00168_consen 1 LTVTIHSARNLPSKDSNGKPDPYVRVSVNGSESTKYKTKVKKNTSNPVWNEEFEFPLDDPDLDSLSFEVWDKDSFGKDEL 80 (85)
T ss_dssp EEEEEEEEESSSSSSTTSSBEEEEEEEEETTTCEEEEECCBSSBSSEEEEEEEEEEESHGCGTEEEEEEEEETSSSSEEE
T ss_pred CEEEEEEEECCCCcccCCcccccceeecceeeeeeeeeeeeeccccceeeeeeeeeeecccccceEEEEEECCCCCCCCE
Confidence 689999999999988888999999999987 6799999999999999999999987666667999999998 566999
Q ss_pred eEEEE
Q 001830 350 VGLVR 354 (1008)
Q Consensus 350 lG~~~ 354 (1008)
||++.
T Consensus 81 iG~~~ 85 (85)
T PF00168_consen 81 IGEVK 85 (85)
T ss_dssp EEEEE
T ss_pred EEEEC
Confidence 99974
No 206
>PF06398 Pex24p: Integral peroxisomal membrane peroxin; InterPro: IPR010482 Peroxisomes play diverse roles in the cell, compartmentalising many activities related to lipid metabolism and functioning in the decomposition of toxic hydrogen peroxide. Sequence similarity was identified between two hypothetical proteins and the peroxin integral membrane protein Pex24p [].
Probab=99.29 E-value=4.4e-11 Score=134.57 Aligned_cols=177 Identities=23% Similarity=0.382 Sum_probs=122.9
Q ss_pred ccchhhhHHHHHHHHHHHhHHHHHH---HHhhccccccCchhHHHHHHHHHHHHHhcchh---HHHHHHHHHHHHhhccc
Q 001830 796 LWSMRRSKANFFRLMSVFSGLFAAG---KWFGEVCMWRNPITTVLVHILFVMLVYFPELI---LPTVFLYMFMIGLWNYR 869 (1008)
Q Consensus 796 ~fs~~~~~~n~~rl~~~~~~~~~~~---~~i~~l~~W~~p~~t~~~~~~~~~~~~~~~l~---lp~~~l~l~~~~~~~~~ 869 (1008)
.+|++.+..|+.+|.+.+..++.++ +.+.++++|++|..|+.++++|+++|++|.+. +|+.+++ +++++..|.
T Consensus 2 ~lS~~ll~~n~~~l~~~l~~~f~~~~~~d~vl~il~W~~p~~t~~~L~l~t~~~l~p~l~l~~lp~~~ll-~~il~~~yl 80 (359)
T PF06398_consen 2 PLSSPLLSSNFPRLSSRLGPIFPFQLILDRVLRILTWTNPDYTLSFLLLYTFLCLNPYLLLLSLPLGLLL-FGILLPSYL 80 (359)
T ss_pred CcChHHHHhChHHHHHHHHHhhHHHHHHHHHHHeEEeCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 5789999999999999999999999 99999999999999999999999999999883 4544433 334445554
Q ss_pred cCC-CCCCCCCCcccccccCCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh----ccccC
Q 001830 870 YRP-RYPPHMNTRISYADAVHPDELDEEFDTFPTTRSPDIVRMRYDRLRSVAGRIQTVVGDVATQGERIQA----LLSWR 944 (1008)
Q Consensus 870 ~~~-~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~~vq~~l~~~a~~~e~~~~----l~~w~ 944 (1008)
.++ ...+.... ...+.+.+.+..|+-++. ...+...++.+||.|+.+.+.++.+.. .++|+
T Consensus 81 ~~~p~~~~~~~~--------~~~~~~~~~~~~ptl~~~------s~e~~~nL~dlQn~m~~~~~~~d~~~~~~~~~~~f~ 146 (359)
T PF06398_consen 81 YRHPSPTSSLPK--------SYEDHNPEPSEGPTLDKP------SREIVMNLRDLQNKMEDLSDPYDFLSSFLYPYLNFS 146 (359)
T ss_pred eecCCCcccccc--------cccccCCCcCCCCCcchh------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCC
Confidence 443 21111100 000001111111111101 123555667799999999999888885 45799
Q ss_pred ChhhHHHHHHHHHHHHHHH----HHhhHHHHHHhhhhhh-hcCCCCCC
Q 001830 945 DPRAAAIFVIFCLVAAVVL----YVTPFQLLALLAGCYI-MRHPRFRH 987 (1008)
Q Consensus 945 ~p~~t~~~~~~~~~~~~~~----~~iP~r~i~l~~g~~~-~~~P~~~~ 987 (1008)
++..|.+++.+|+++.+.+ .+||+|++++++|..+ +.||..+.
T Consensus 147 ~e~~s~~~f~~l~~~~~~~~l~~~~ip~r~~ll~~g~~~l~~Hp~~~~ 194 (359)
T PF06398_consen 147 DENLSSLIFLLLLLSPILLLLLSPFIPWRFVLLVSGAFVLLYHPPWRQ 194 (359)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHhhcCCcHHH
Confidence 9999998888887777654 4589999999999443 56997654
No 207
>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.25 E-value=1.1e-11 Score=135.34 Aligned_cols=120 Identities=29% Similarity=0.508 Sum_probs=103.6
Q ss_pred eEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEEEeeeecCCCCCeEeeEEEEEeccCCcCeEEEEEEecC--C-----
Q 001830 272 RYLFVRVVKARDLPSKDVTGSLDPFVEVKVGNYKGITKYYEKKQNPEWNEVFAFSRERIQSSVLEVAVKDKD--V----- 344 (1008)
Q Consensus 272 ~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~~~~~t~nP~w~e~f~f~~~~~~~~~l~i~V~d~d--~----- 344 (1008)
..++++|+.|.+|.++|..|.+||||.+.++..+.+|+++...+||+|||.|.|.+.+. .+.|.++|||.| +
T Consensus 295 akitltvlcaqgl~akdktg~sdpyvt~qv~ktkrrtrti~~~lnpvw~ekfhfechns-tdrikvrvwded~dlksklr 373 (1283)
T KOG1011|consen 295 AKITLTVLCAQGLIAKDKTGKSDPYVTAQVGKTKRRTRTIHQELNPVWNEKFHFECHNS-TDRIKVRVWDEDNDLKSKLR 373 (1283)
T ss_pred eeeEEeeeecccceecccCCCCCCcEEEeecccchhhHhhhhccchhhhhheeeeecCC-CceeEEEEecCcccHHHHHH
Confidence 36899999999999999999999999999999999999999999999999999998776 578999999986 2
Q ss_pred -----CCCeeeEEEEEEccccCCCCCCCCCCccEEEEeecCCCCc-cceEEEEEEEEeccC
Q 001830 345 -----VKDDYVGLVRFDLNEVPTRVPPDSPLAAEWYRLEDRKGEK-KKGELMLAVWYGTQA 399 (1008)
Q Consensus 345 -----~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~-~~G~i~l~~~~~~~~ 399 (1008)
.+|+|+|+..|.+..+... ...||+|+.....+ ..|.|++.+...-.+
T Consensus 374 qkl~resddflgqtvievrtlsge-------mdvwynlekrtdksavsgairlhisveikg 427 (1283)
T KOG1011|consen 374 QKLTRESDDFLGQTVIEVRTLSGE-------MDVWYNLEKRTDKSAVSGAIRLHISVEIKG 427 (1283)
T ss_pred HHhhhcccccccceeEEEEecccc-------hhhhcchhhccchhhccceEEEEEEEEEcC
Confidence 3699999999999988753 57999998776554 778888877665443
No 208
>PLN02270 phospholipase D alpha
Probab=99.23 E-value=8.8e-11 Score=137.09 Aligned_cols=127 Identities=20% Similarity=0.282 Sum_probs=107.7
Q ss_pred eeEEEEEEEeecCCCCCcc---------------CCCCCCCCeEEEEEECCEE-EEeeeecCC-CCcccccEEEEEeeCC
Q 001830 599 IGVLELGILNADGLHPMKT---------------RDGRGTADTYCVAKYGHKW-VRTRTIINS-LSAKYNEQYTWEVYDP 661 (1008)
Q Consensus 599 ~g~L~v~v~~a~~L~~~~~---------------~~~~g~~dpyv~~~~~~~~-~~T~~~~~~-~nP~wne~f~~~v~~~ 661 (1008)
-|.|.++|++|++|++++. ....+.+||||.|.+++.+ .||+++.+. .||+|||.|.+.+.++
T Consensus 7 hg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~a~v~rtr~~~~~~~~p~w~e~f~i~~ah~ 86 (808)
T PLN02270 7 HGTLHATIYEVDKLHSGGGPGFLGKLVANVEETVGVGKGESQLYATIDLEKARVGRTRKIENEPKNPRWYESFHIYCAHM 86 (808)
T ss_pred ecceEEEEEEcccCCCcchhhHHHHHHhccchhccCCCCCCCceEEEEeCCcEEEEEeecCCCCCCCccccceEEeeccC
Confidence 3899999999999997420 1234678999999998865 599999885 6999999999999999
Q ss_pred CceEEEEEEeCCCCCCCCCCCCceeEEEEEEcccccCCCeEEeeEeeeecCCCCCccccEEEEEEEEEec
Q 001830 662 ATVLTVGVFDNSHIGGSSGSKDVKIGKVRIRISTLETGRVYTHSYPLLVLHPSGVKKMGELHLAIRFSYT 731 (1008)
Q Consensus 662 ~~~l~i~V~d~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~G~i~l~~~f~~~ 731 (1008)
...++|+|.|.+.++ ..+||++.||+.+|..|..+++|+++.....+..+....|++.++|..-
T Consensus 87 ~~~v~f~vkd~~~~g------~~~ig~~~~p~~~~~~g~~i~~~~~~~~~~~~p~~~~~~~~~~~~f~~~ 150 (808)
T PLN02270 87 ASNIIFTVKDDNPIG------ATLIGRAYIPVEEILDGEEVDRWVEILDNDKNPIHGGSKIHVKLQYFEV 150 (808)
T ss_pred cceEEEEEecCCccC------ceEEEEEEEEHHHhcCCCccccEEeccCCCCCcCCCCCEEEEEEEEEEc
Confidence 999999999999887 6799999999999999999999999987765544444599999999653
No 209
>cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.21 E-value=7e-11 Score=109.89 Aligned_cols=95 Identities=22% Similarity=0.292 Sum_probs=78.4
Q ss_pred eEEEEEEEeeCCCCCC--CCC--CCCcEEEEEECC---eeeccccCCCCCC--CeeeeEEEEEecCC-------------
Q 001830 5 KLGVEVVSAYELMPKD--GQG--SSNAFVELHFDG---QKFRTTTKEKDLT--PVWNESFYFNISDP------------- 62 (1008)
Q Consensus 5 ~L~V~v~~a~~L~~~d--~~g--~~dPyv~v~~~~---~~~~T~~~~~t~n--P~Wne~f~f~v~~~------------- 62 (1008)
.|+|.|..|+|++..+ ..| .+||||++.+.+ .+++|.+.++++| |+||+.|.|++..+
T Consensus 1 eLRViIw~~~~v~~~~~~~~g~~~sD~yVK~~L~~~~~~kqkTDVHyrslnG~~~FNwRfvF~~~~~~~~~~~~~~~~~~ 80 (133)
T cd08374 1 ELRVIVWNTRDVLNDDTNITGEKMSDIYVKGWLDGLEEDKQKTDVHYRSLDGEGNFNWRFVFPFDYLPAEKKIVVIKKEH 80 (133)
T ss_pred CEEEEEEECcCCcccccccCCccccCeEEEEEEccCcccccccceEEecCCCCcEEeEEEEEeeecCCccceeEEEeecc
Confidence 3899999999966543 366 499999999975 4599999999999 99999999997541
Q ss_pred -------CCCCCceEEEEEEeCCCCCCCCCeeEEEEEeCcccCCC
Q 001830 63 -------HNLSNLALDAYVYNHNRTTNSKSFLGKVRLTGTSFVPY 100 (1008)
Q Consensus 63 -------~~~~~~~l~~~V~d~~~~~~~d~~lG~~~i~l~~l~~~ 100 (1008)
+......|.|+|||.|.++ .|++||++.++|..+...
T Consensus 81 ~~~~~~~e~~~~~~L~lqvwD~D~~s-~dd~iG~~~l~l~~l~~~ 124 (133)
T cd08374 81 FWSLDETEYKIPPKLTLQVWDNDKFS-PDDFLGSLELDLSILPRP 124 (133)
T ss_pred ccccCcceEecCcEEEEEEEECcccC-CCCcceEEEEEhhhcccc
Confidence 2345678999999999886 789999999999887543
No 210
>cd00030 C2 C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions.
Probab=99.15 E-value=2.3e-10 Score=103.29 Aligned_cols=101 Identities=35% Similarity=0.608 Sum_probs=83.2
Q ss_pred EEEEEEEeeCCCCCCCCCCCCcEEEEEECC-eeeccccCCCCCCCeeeeEEEEEecCCCCCCCceEEEEEEeCCCCCCCC
Q 001830 6 LGVEVVSAYELMPKDGQGSSNAFVELHFDG-QKFRTTTKEKDLTPVWNESFYFNISDPHNLSNLALDAYVYNHNRTTNSK 84 (1008)
Q Consensus 6 L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~-~~~~T~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~~~V~d~~~~~~~d 84 (1008)
|.|+|++|++|......+.++|||.+.+.+ ..++|.++.++.||.|||.|.|.+... ....|.|+|||++... .+
T Consensus 1 l~v~i~~~~~l~~~~~~~~~~~~v~v~~~~~~~~~T~~~~~~~~P~w~~~~~~~~~~~---~~~~l~i~v~~~~~~~-~~ 76 (102)
T cd00030 1 LRVTVIEARNLPAKDLNGKSDPYVKVSLGGKQKFKTKVVKNTLNPVWNETFEFPVLDP---ESDTLTVEVWDKDRFS-KD 76 (102)
T ss_pred CEEEEEeeeCCCCcCCCCCCCcEEEEEeccCceEecceeCCCCCCcccceEEEEccCC---CCCEEEEEEEecCCCC-CC
Confidence 579999999999877777899999999998 789999999999999999999998541 3458999999997764 67
Q ss_pred CeeEEEEEeCcccCCCCCceeEEEec
Q 001830 85 SFLGKVRLTGTSFVPYSDAVVLHYPL 110 (1008)
Q Consensus 85 ~~lG~~~i~l~~l~~~~~~~~~~~~L 110 (1008)
.+||.+.+++.++.........|++|
T Consensus 77 ~~ig~~~~~l~~l~~~~~~~~~~~~l 102 (102)
T cd00030 77 DFLGEVEIPLSELLDSGKEGELWLPL 102 (102)
T ss_pred ceeEEEEEeHHHhhhcCCcCcceecC
Confidence 89999999998887333333446654
No 211
>cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.10 E-value=4.5e-10 Score=104.51 Aligned_cols=93 Identities=20% Similarity=0.261 Sum_probs=77.5
Q ss_pred EEEEEEeecCCCCCccCCCCCC--CCeEEEEEECC---EEEEeeeecCCCC--cccccEEEEEeeCC-------------
Q 001830 602 LELGILNADGLHPMKTRDGRGT--ADTYCVAKYGH---KWVRTRTIINSLS--AKYNEQYTWEVYDP------------- 661 (1008)
Q Consensus 602 L~v~v~~a~~L~~~~~~~~~g~--~dpyv~~~~~~---~~~~T~~~~~~~n--P~wne~f~~~v~~~------------- 661 (1008)
|+|.|.+|+|++..+. +..|. +||||++.+.+ ...+|.++++++| |.||++|.|++.-+
T Consensus 2 LRViIw~~~~v~~~~~-~~~g~~~sD~yVK~~L~~~~~~kqkTDVHyrslnG~~~FNwRfvF~~~~~~~~~~~~~~~~~~ 80 (133)
T cd08374 2 LRVIVWNTRDVLNDDT-NITGEKMSDIYVKGWLDGLEEDKQKTDVHYRSLDGEGNFNWRFVFPFDYLPAEKKIVVIKKEH 80 (133)
T ss_pred EEEEEEECcCCccccc-ccCCccccCeEEEEEEccCcccccccceEEecCCCCcEEeEEEEEeeecCCccceeEEEeecc
Confidence 7999999999775432 33454 99999998854 5689999999998 99999999987641
Q ss_pred -----------CceEEEEEEeCCCCCCCCCCCCceeEEEEEEcccccCCC
Q 001830 662 -----------ATVLTVGVFDNSHIGGSSGSKDVKIGKVRIRISTLETGR 700 (1008)
Q Consensus 662 -----------~~~l~i~V~d~~~~~~~~~~~d~~lG~~~i~l~~l~~~~ 700 (1008)
...|+|+|||+|.++ +|++||.++++|..+..+.
T Consensus 81 ~~~~~~~e~~~~~~L~lqvwD~D~~s-----~dd~iG~~~l~l~~l~~~~ 125 (133)
T cd08374 81 FWSLDETEYKIPPKLTLQVWDNDKFS-----PDDFLGSLELDLSILPRPA 125 (133)
T ss_pred ccccCcceEecCcEEEEEEEECcccC-----CCCcceEEEEEhhhccccc
Confidence 245999999999887 8999999999999987765
No 212
>cd00030 C2 C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions.
Probab=99.07 E-value=9.1e-10 Score=99.29 Aligned_cols=99 Identities=30% Similarity=0.491 Sum_probs=84.9
Q ss_pred EEEEEEeecCCCCCccCCCCCCCCeEEEEEECC-EEEEeeeecCCCCcccccEEEEEeeC-CCceEEEEEEeCCCCCCCC
Q 001830 602 LELGILNADGLHPMKTRDGRGTADTYCVAKYGH-KWVRTRTIINSLSAKYNEQYTWEVYD-PATVLTVGVFDNSHIGGSS 679 (1008)
Q Consensus 602 L~v~v~~a~~L~~~~~~~~~g~~dpyv~~~~~~-~~~~T~~~~~~~nP~wne~f~~~v~~-~~~~l~i~V~d~~~~~~~~ 679 (1008)
|.|.|++|++|... ...+..+|||.+.+.+ ...+|+++.++.||.||+.|.|++.. ....|.|+|||.+..+
T Consensus 1 l~v~i~~~~~l~~~---~~~~~~~~~v~v~~~~~~~~~T~~~~~~~~P~w~~~~~~~~~~~~~~~l~i~v~~~~~~~--- 74 (102)
T cd00030 1 LRVTVIEARNLPAK---DLNGKSDPYVKVSLGGKQKFKTKVVKNTLNPVWNETFEFPVLDPESDTLTVEVWDKDRFS--- 74 (102)
T ss_pred CEEEEEeeeCCCCc---CCCCCCCcEEEEEeccCceEecceeCCCCCCcccceEEEEccCCCCCEEEEEEEecCCCC---
Confidence 46899999999854 2356789999999988 88999999999999999999999988 6778999999998654
Q ss_pred CCCCceeEEEEEEccccc-CCCeEEeeEee
Q 001830 680 GSKDVKIGKVRIRISTLE-TGRVYTHSYPL 708 (1008)
Q Consensus 680 ~~~d~~lG~~~i~l~~l~-~~~~~~~~~~L 708 (1008)
.+.+||++.+++.++. .......|++|
T Consensus 75 --~~~~ig~~~~~l~~l~~~~~~~~~~~~l 102 (102)
T cd00030 75 --KDDFLGEVEIPLSELLDSGKEGELWLPL 102 (102)
T ss_pred --CCceeEEEEEeHHHhhhcCCcCcceecC
Confidence 6899999999999997 56666677764
No 213
>smart00239 C2 Protein kinase C conserved region 2 (CalB). Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles.
Probab=99.02 E-value=2.4e-09 Score=96.66 Aligned_cols=90 Identities=38% Similarity=0.623 Sum_probs=79.7
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECCe---EEEeeeecCCCCCeEeeEEEEEeccCCcCeEEEEEEecC-CCCCee
Q 001830 274 LFVRVVKARDLPSKDVTGSLDPFVEVKVGNY---KGITKYYEKKQNPEWNEVFAFSRERIQSSVLEVAVKDKD-VVKDDY 349 (1008)
Q Consensus 274 L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~---~~kT~~~~~t~nP~w~e~f~f~~~~~~~~~l~i~V~d~d-~~~d~~ 349 (1008)
|.|+|++|++|......+..+|||++++.+. ..+|+++.++.||.|||+|.|.+.......|.|+|||.+ .+.+.+
T Consensus 2 l~i~i~~~~~l~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~i~v~~~~~~~~~~~ 81 (101)
T smart00239 2 LTVKIISARNLPKKDKKGKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFEVPPPELAELEIEVYDKDRFGRDDF 81 (101)
T ss_pred eEEEEEEeeCCCCCCCCCCCCceEEEEEeCCccceEeeeEecCCCCCcccceEEEEecCcccCEEEEEEEecCCccCCce
Confidence 6799999999988776578899999999875 789999999999999999999987765689999999998 556999
Q ss_pred eEEEEEEccccCCC
Q 001830 350 VGLVRFDLNEVPTR 363 (1008)
Q Consensus 350 lG~~~i~l~~l~~~ 363 (1008)
+|.+.+++.++..+
T Consensus 82 ~G~~~~~l~~~~~~ 95 (101)
T smart00239 82 IGQVTIPLSDLLLG 95 (101)
T ss_pred eEEEEEEHHHcccC
Confidence 99999999998764
No 214
>smart00239 C2 Protein kinase C conserved region 2 (CalB). Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles.
Probab=99.02 E-value=2.1e-09 Score=97.06 Aligned_cols=92 Identities=29% Similarity=0.486 Sum_probs=79.3
Q ss_pred EEEEEEeecCCCCCccCCCCCCCCeEEEEEECCE---EEEeeeecCCCCcccccEEEEEeeCC-CceEEEEEEeCCCCCC
Q 001830 602 LELGILNADGLHPMKTRDGRGTADTYCVAKYGHK---WVRTRTIINSLSAKYNEQYTWEVYDP-ATVLTVGVFDNSHIGG 677 (1008)
Q Consensus 602 L~v~v~~a~~L~~~~~~~~~g~~dpyv~~~~~~~---~~~T~~~~~~~nP~wne~f~~~v~~~-~~~l~i~V~d~~~~~~ 677 (1008)
|.+.|++|++|.... ..+..+|||++++++. ..+|+++.++.||.|||.|.|.+..+ ...|.|+|||.+..+
T Consensus 2 l~i~i~~~~~l~~~~---~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~i~v~~~~~~~- 77 (101)
T smart00239 2 LTVKIISARNLPKKD---KKGKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFEVPPPELAELEIEVYDKDRFG- 77 (101)
T ss_pred eEEEEEEeeCCCCCC---CCCCCCceEEEEEeCCccceEeeeEecCCCCCcccceEEEEecCcccCEEEEEEEecCCcc-
Confidence 678999999998642 2356899999999775 79999999999999999999999887 788999999998654
Q ss_pred CCCCCCceeEEEEEEcccccCCCe
Q 001830 678 SSGSKDVKIGKVRIRISTLETGRV 701 (1008)
Q Consensus 678 ~~~~~d~~lG~~~i~l~~l~~~~~ 701 (1008)
.+.+||.+.+++.++..+..
T Consensus 78 ----~~~~~G~~~~~l~~~~~~~~ 97 (101)
T smart00239 78 ----RDDFIGQVTIPLSDLLLGGR 97 (101)
T ss_pred ----CCceeEEEEEEHHHcccCcc
Confidence 78999999999999876653
No 215
>PLN02223 phosphoinositide phospholipase C
Probab=99.00 E-value=4.5e-09 Score=118.28 Aligned_cols=119 Identities=19% Similarity=0.253 Sum_probs=90.2
Q ss_pred eeEEEEEEEeecCCCCC--ccCCCCCCCCeEEEEEECC-----EEEEeeeecCCCCcccccEEEEEeeCCC-ceEEEEEE
Q 001830 599 IGVLELGILNADGLHPM--KTRDGRGTADTYCVAKYGH-----KWVRTRTIINSLSAKYNEQYTWEVYDPA-TVLTVGVF 670 (1008)
Q Consensus 599 ~g~L~v~v~~a~~L~~~--~~~~~~g~~dpyv~~~~~~-----~~~~T~~~~~~~nP~wne~f~~~v~~~~-~~l~i~V~ 670 (1008)
...|.|+|+.|++++.- +..+.....||||+|.+.| ...+|++..++.||+|||+|.|.|..|. ..|+|+|+
T Consensus 408 ~~~L~V~Visgq~~~~~~~k~~~~~s~~DpyV~VeI~Gvp~D~~~~kT~v~nNg~nPvWne~F~F~i~~PELAlLrf~V~ 487 (537)
T PLN02223 408 VKILKVKIYMGDGWIVDFKKRIGRLSKPDLYVRISIAGVPHDEKIMKTTVKNNEWKPTWGEEFTFPLTYPDLALISFEVY 487 (537)
T ss_pred ceEEEEEEEEcccccCCcccccCCCCCCCeEEEEEEeeccCCcceeEEEeCCCCcCceecceeEEEEEccCceEEEEEEE
Confidence 46799999999998521 1112234579999999854 3467876667899999999999998885 46999999
Q ss_pred eCCCCCCCCCCCCceeEEEEEEcccccCCCeEEeeEeeeecCCCCCccccEEEEEE
Q 001830 671 DNSHIGGSSGSKDVKIGKVRIRISTLETGRVYTHSYPLLVLHPSGVKKMGELHLAI 726 (1008)
Q Consensus 671 d~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~G~i~l~~ 726 (1008)
|+|..+ +++++|+..+|++.|+.|- ++.+|.+..+..... -.|.+.+
T Consensus 488 D~D~~~-----~ddfiGQ~~LPv~~Lr~Gy---R~VpL~~~~g~~l~~-~~Ll~~f 534 (537)
T PLN02223 488 DYEVST-----ADAFCGQTCLPVSELIEGI---RAVPLYDERGKACSS-TMLLTRF 534 (537)
T ss_pred ecCCCC-----CCcEEEEEecchHHhcCCc---eeEeccCCCcCCCCC-ceEEEEE
Confidence 999765 8999999999999999996 788997655433222 3444433
No 216
>KOG1031 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=98.98 E-value=2e-09 Score=116.63 Aligned_cols=120 Identities=25% Similarity=0.424 Sum_probs=101.6
Q ss_pred eEEEEEEEeecCCCCCccCCCCCCCCeEEEEEECCEEEEeeeecCCCCccccc-EEEEEeeCC---CceEEEEEEeCCCC
Q 001830 600 GVLELGILNADGLHPMKTRDGRGTADTYCVAKYGHKWVRTRTIINSLSAKYNE-QYTWEVYDP---ATVLTVGVFDNSHI 675 (1008)
Q Consensus 600 g~L~v~v~~a~~L~~~~~~~~~g~~dpyv~~~~~~~~~~T~~~~~~~nP~wne-~f~~~v~~~---~~~l~i~V~d~~~~ 675 (1008)
|.|.|.|..|++|+.||. .....|.||.+++++..++|.+..+++||.||. -|.|+|.+. +.+|+|.++|+|..
T Consensus 3 gkl~vki~a~r~lpvmdk--asd~tdafveik~~n~t~ktdvf~kslnp~wnsdwfkfevddadlqdeplqi~lld~dty 80 (1169)
T KOG1031|consen 3 GKLGVKIKAARHLPVMDK--ASDLTDAFVEIKFANTTFKTDVFLKSLNPQWNSDWFKFEVDDADLQDEPLQIRLLDHDTY 80 (1169)
T ss_pred CcceeEEEeccCCccccc--ccccchheeEEEecccceehhhhhhhcCCcccccceEEecChhhhccCCeeEEEeccccc
Confidence 788999999999999973 355679999999999999999999999999984 589999874 56799999999988
Q ss_pred CCCCCCCCceeEEEEEEccccc----------CCCeEEeeEeeeecCCCCCccccEEEEEEEEE
Q 001830 676 GGSSGSKDVKIGKVRIRISTLE----------TGRVYTHSYPLLVLHPSGVKKMGELHLAIRFS 729 (1008)
Q Consensus 676 ~~~~~~~d~~lG~~~i~l~~l~----------~~~~~~~~~~L~~~~~~~~~~~G~i~l~~~f~ 729 (1008)
+ .++.||++.|+++.|. .|.....|+|+...-. | .+|+|.+.++..
T Consensus 81 s-----andaigkv~i~idpl~~e~aaqavhgkgtvisgw~pifdtih-g--irgeinvivkvd 136 (1169)
T KOG1031|consen 81 S-----ANDAIGKVNIDIDPLCLEEAAQAVHGKGTVISGWFPIFDTIH-G--IRGEINVIVKVD 136 (1169)
T ss_pred c-----cccccceeeeccChHHHHhHHhhhcCCceEEeeeeecceecc-c--ccceeEEEEEEe
Confidence 7 8999999999998872 3467889999975432 2 359999988874
No 217
>PLN02223 phosphoinositide phospholipase C
Probab=98.96 E-value=6.8e-09 Score=116.85 Aligned_cols=115 Identities=17% Similarity=0.231 Sum_probs=91.2
Q ss_pred eEEEEEEEEeecCCCC-----CCCCCCCcEEEEEECC-----eEEEeeeecCCCCCeEeeEEEEEeccCCcCeEEEEEEe
Q 001830 272 RYLFVRVVKARDLPSK-----DVTGSLDPFVEVKVGN-----YKGITKYYEKKQNPEWNEVFAFSRERIQSSVLEVAVKD 341 (1008)
Q Consensus 272 ~~L~V~v~~a~~L~~~-----d~~g~~dpyv~v~~~~-----~~~kT~~~~~t~nP~w~e~f~f~~~~~~~~~l~i~V~d 341 (1008)
..|.|+|+.|.++... +....+||||+|.+.+ ..++|.+..++.||+|||+|.|.+..+.-..|+|+|+|
T Consensus 409 ~~L~V~Visgq~~~~~~~k~~~~~s~~DpyV~VeI~Gvp~D~~~~kT~v~nNg~nPvWne~F~F~i~~PELAlLrf~V~D 488 (537)
T PLN02223 409 KILKVKIYMGDGWIVDFKKRIGRLSKPDLYVRISIAGVPHDEKIMKTTVKNNEWKPTWGEEFTFPLTYPDLALISFEVYD 488 (537)
T ss_pred eEEEEEEEEcccccCCcccccCCCCCCCeEEEEEEeeccCCcceeEEEeCCCCcCceecceeEEEEEccCceEEEEEEEe
Confidence 4699999999987521 2234579999999975 24678877889999999999999877766789999999
Q ss_pred cC-CCCCeeeEEEEEEccccCCCCCCCCCCccEEEEeecCCCCc-cceEEEEEEE
Q 001830 342 KD-VVKDDYVGLVRFDLNEVPTRVPPDSPLAAEWYRLEDRKGEK-KKGELMLAVW 394 (1008)
Q Consensus 342 ~d-~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~-~~G~i~l~~~ 394 (1008)
+| ..+++|+|++.+++..|..+ -++++|.+..+.. ....+.+.+.
T Consensus 489 ~D~~~~ddfiGQ~~LPv~~Lr~G--------yR~VpL~~~~g~~l~~~~Ll~~f~ 535 (537)
T PLN02223 489 YEVSTADAFCGQTCLPVSELIEG--------IRAVPLYDERGKACSSTMLLTRFK 535 (537)
T ss_pred cCCCCCCcEEEEEecchHHhcCC--------ceeEeccCCCcCCCCCceEEEEEE
Confidence 99 56799999999999999875 3788998887765 2234444443
No 218
>PLN02952 phosphoinositide phospholipase C
Probab=98.94 E-value=9.8e-09 Score=118.35 Aligned_cols=120 Identities=21% Similarity=0.245 Sum_probs=93.3
Q ss_pred eeEEEEEEEeecCCCCCc---cCCCCCCCCeEEEEEECC-----EEEEeeeecCCCCcccccEEEEEeeCCC-ceEEEEE
Q 001830 599 IGVLELGILNADGLHPMK---TRDGRGTADTYCVAKYGH-----KWVRTRTIINSLSAKYNEQYTWEVYDPA-TVLTVGV 669 (1008)
Q Consensus 599 ~g~L~v~v~~a~~L~~~~---~~~~~g~~dpyv~~~~~~-----~~~~T~~~~~~~nP~wne~f~~~v~~~~-~~l~i~V 669 (1008)
...|.|.|+.|++|+... ..+.....||||+|.+-+ ...+|+++.++.||.|||+|.|.+..|. ..+.|+|
T Consensus 469 ~~~L~V~VisGq~l~lp~~~~~~~~~~~~D~yV~V~i~G~p~D~~~~kTkvi~nN~nPvWnE~F~F~i~~PELAllrf~V 548 (599)
T PLN02952 469 KKTLKVKVYLGDGWRLDFSHTHFDSYSPPDFYTKMYIVGVPADNAKKKTKIIEDNWYPAWNEEFSFPLTVPELALLRIEV 548 (599)
T ss_pred cceEEEEEEECcccCCCCccccCCccCCCCceEEEEEeccCCCCcceeeeeccCCCCcccCCeeEEEEEcCCccEEEEEE
Confidence 367999999999985311 112223459999998843 4679999999999999999999998874 5799999
Q ss_pred EeCCCCCCCCCCCCceeEEEEEEcccccCCCeEEeeEeeeecCCCCCccccEEEEEEEEE
Q 001830 670 FDNSHIGGSSGSKDVKIGKVRIRISTLETGRVYTHSYPLLVLHPSGVKKMGELHLAIRFS 729 (1008)
Q Consensus 670 ~d~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~G~i~l~~~f~ 729 (1008)
+|+|..+ .++++|++.||++.|..|. +|+||.+..+.. .+...|-++|.
T Consensus 549 ~D~D~~~-----~ddfiGq~~lPv~~Lr~Gy---R~VpL~~~~G~~---l~~a~Llv~f~ 597 (599)
T PLN02952 549 REYDMSE-----KDDFGGQTCLPVSELRPGI---RSVPLHDKKGEK---LKNVRLLMRFI 597 (599)
T ss_pred EecCCCC-----CCCeEEEEEcchhHhcCCc---eeEeCcCCCCCC---CCCEEEEEEEE
Confidence 9998765 7999999999999999996 699997544322 25566666664
No 219
>cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae. This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=98.89 E-value=4.9e-09 Score=90.74 Aligned_cols=83 Identities=18% Similarity=0.284 Sum_probs=67.7
Q ss_pred EEEEEEEeeCCCCCC---CCCCCCcEEEEEECCe-eeccccCCCCCCCeeeeEEEEEecCCCCCCCceEEEEEEeCCCCC
Q 001830 6 LGVEVVSAYELMPKD---GQGSSNAFVELHFDGQ-KFRTTTKEKDLTPVWNESFYFNISDPHNLSNLALDAYVYNHNRTT 81 (1008)
Q Consensus 6 L~V~v~~a~~L~~~d---~~g~~dPyv~v~~~~~-~~~T~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~~~V~d~~~~~ 81 (1008)
|.|+|++|+++...+ ..+.+||||.+.+++. +.||++ +.||.|||+|.|++.. ...++|.|||+...
T Consensus 1 L~I~V~~~RdvdH~~~~~~~~~~etyV~IKved~~kaRTr~---srnd~WnE~F~i~Vdk-----~nEiel~VyDk~~~- 71 (109)
T cd08689 1 LTITITSARDVDHIASPRFSKRPETYVSIKVEDVERARTKP---SRNDRWNEDFEIPVEK-----NNEEEVIVYDKGGD- 71 (109)
T ss_pred CEEEEEEEecCccccchhhccCCCcEEEEEECCEEEEeccC---CCCCcccceEEEEecC-----CcEEEEEEEeCCCC-
Confidence 689999999998877 5778999999999987 799987 5899999999999943 23899999997432
Q ss_pred CCCCeeEEEEEeCcccC
Q 001830 82 NSKSFLGKVRLTGTSFV 98 (1008)
Q Consensus 82 ~~d~~lG~~~i~l~~l~ 98 (1008)
+.--+|...+.+.++.
T Consensus 72 -~~~Pi~llW~~~sdi~ 87 (109)
T cd08689 72 -QPVPVGLLWLRLSDIA 87 (109)
T ss_pred -eecceeeehhhHHHHH
Confidence 4456788777777653
No 220
>PLN02270 phospholipase D alpha
Probab=98.89 E-value=1.5e-08 Score=118.87 Aligned_cols=123 Identities=17% Similarity=0.295 Sum_probs=102.7
Q ss_pred eEEEEEEEEeecCCCCC------------------CCCCCCcEEEEEECCe-EEEeeeecCC-CCCeEeeEEEEEeccCC
Q 001830 272 RYLFVRVVKARDLPSKD------------------VTGSLDPFVEVKVGNY-KGITKYYEKK-QNPEWNEVFAFSRERIQ 331 (1008)
Q Consensus 272 ~~L~V~v~~a~~L~~~d------------------~~g~~dpyv~v~~~~~-~~kT~~~~~t-~nP~w~e~f~f~~~~~~ 331 (1008)
|.|.|+|.+|++|+..+ ..+.+||||.|.+++. ..||+++.+. .||.|+|+|...+....
T Consensus 8 g~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~a~v~rtr~~~~~~~~p~w~e~f~i~~ah~~ 87 (808)
T PLN02270 8 GTLHATIYEVDKLHSGGGPGFLGKLVANVEETVGVGKGESQLYATIDLEKARVGRTRKIENEPKNPRWYESFHIYCAHMA 87 (808)
T ss_pred cceEEEEEEcccCCCcchhhHHHHHHhccchhccCCCCCCCceEEEEeCCcEEEEEeecCCCCCCCccccceEEeeccCc
Confidence 68999999999998531 1357899999999985 4699999884 69999999999998775
Q ss_pred cCeEEEEEEecCCCCCeeeEEEEEEccccCCCCCCCCCCccEEEEeecCCCCccc--eEEEEEEEEeccCC
Q 001830 332 SSVLEVAVKDKDVVKDDYVGLVRFDLNEVPTRVPPDSPLAAEWYRLEDRKGEKKK--GELMLAVWYGTQAD 400 (1008)
Q Consensus 332 ~~~l~i~V~d~d~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~--G~i~l~~~~~~~~~ 400 (1008)
..+.|+|+|.|..+..+||.+.|++.++..+ .....||++.+..++... ..|+++++|.+...
T Consensus 88 -~~v~f~vkd~~~~g~~~ig~~~~p~~~~~~g-----~~i~~~~~~~~~~~~p~~~~~~~~~~~~f~~~~~ 152 (808)
T PLN02270 88 -SNIIFTVKDDNPIGATLIGRAYIPVEEILDG-----EEVDRWVEILDNDKNPIHGGSKIHVKLQYFEVTK 152 (808)
T ss_pred -ceEEEEEecCCccCceEEEEEEEEHHHhcCC-----CccccEEeccCCCCCcCCCCCEEEEEEEEEEccc
Confidence 6899999999977788999999999999886 457899999988766533 37899999987543
No 221
>KOG1031 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=98.87 E-value=6.7e-09 Score=112.69 Aligned_cols=122 Identities=27% Similarity=0.457 Sum_probs=101.2
Q ss_pred ceEEEEEEEeeCCCCCCCC-CCCCcEEEEEECCeeeccccCCCCCCCeee-eEEEEEecCCCCCCCceEEEEEEeCCCCC
Q 001830 4 LKLGVEVVSAYELMPKDGQ-GSSNAFVELHFDGQKFRTTTKEKDLTPVWN-ESFYFNISDPHNLSNLALDAYVYNHNRTT 81 (1008)
Q Consensus 4 ~~L~V~v~~a~~L~~~d~~-g~~dPyv~v~~~~~~~~T~~~~~t~nP~Wn-e~f~f~v~~~~~~~~~~l~~~V~d~~~~~ 81 (1008)
+.|.|.|..||+|+.+|.. ..-|.||.|.+++..++|.+..+++||.|| +.|.|.|.+ .++++..|.|++.|+|.++
T Consensus 3 gkl~vki~a~r~lpvmdkasd~tdafveik~~n~t~ktdvf~kslnp~wnsdwfkfevdd-adlqdeplqi~lld~dtys 81 (1169)
T KOG1031|consen 3 GKLGVKIKAARHLPVMDKASDLTDAFVEIKFANTTFKTDVFLKSLNPQWNSDWFKFEVDD-ADLQDEPLQIRLLDHDTYS 81 (1169)
T ss_pred CcceeEEEeccCCcccccccccchheeEEEecccceehhhhhhhcCCcccccceEEecCh-hhhccCCeeEEEecccccc
Confidence 5789999999999999874 477999999999999999999999999998 789999976 5688899999999999987
Q ss_pred CCCCeeEEEEEeCcccCCC---------CCceeEEEecccCCCCcccceEEEEEEEe
Q 001830 82 NSKSFLGKVRLTGTSFVPY---------SDAVVLHYPLEKRSIFSRVKGELGLKVFV 129 (1008)
Q Consensus 82 ~~d~~lG~~~i~l~~l~~~---------~~~~~~~~~L~~~~~~~~~~G~i~~~~~~ 129 (1008)
.+|-||.+.|+++-|.-. +....-|+|+-+.- ..++|+|.+-+.+
T Consensus 82 -andaigkv~i~idpl~~e~aaqavhgkgtvisgw~pifdti--hgirgeinvivkv 135 (1169)
T KOG1031|consen 82 -ANDAIGKVNIDIDPLCLEEAAQAVHGKGTVISGWFPIFDTI--HGIRGEINVIVKV 135 (1169)
T ss_pred -cccccceeeeccChHHHHhHHhhhcCCceEEeeeeecceec--ccccceeEEEEEE
Confidence 788999999998875321 22334699987652 2478999876643
No 222
>PLN02230 phosphoinositide phospholipase C 4
Probab=98.87 E-value=1.5e-08 Score=116.54 Aligned_cols=117 Identities=22% Similarity=0.292 Sum_probs=86.4
Q ss_pred ceEEEEEEEeeCCCCC------CCCCCCCcEEEEEECC-----eeeccccCCCCCCCeeeeEEEEEecCCCCCCCceEEE
Q 001830 4 LKLGVEVVSAYELMPK------DGQGSSNAFVELHFDG-----QKFRTTTKEKDLTPVWNESFYFNISDPHNLSNLALDA 72 (1008)
Q Consensus 4 ~~L~V~v~~a~~L~~~------d~~g~~dPyv~v~~~~-----~~~~T~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~~ 72 (1008)
..|.|+|+++++++.. +.....||||+|.+-| .+++|++..++.||+|||+|.|.+.-++ + ..|+|
T Consensus 469 ~~L~V~VisGq~~~l~~~k~~~~~~s~~DpyV~Vei~Gvp~D~~~~kT~v~~n~~nP~Wneef~F~l~vPE-L--AllRf 545 (598)
T PLN02230 469 KTLKVKVCMGDGWLLDFKKTHFDSYSPPDFFVRVGIAGAPVDEVMEKTKIEYDTWTPIWNKEFIFPLAVPE-L--ALLRV 545 (598)
T ss_pred cEEEEEEEEccCccCCCccccCCCCCCCCceEEEEEEECCCCCcccceeccCCCCCCccCCeeEEEEEcCc-e--eEEEE
Confidence 5799999999997521 2223579999999853 3578999999999999999999987554 2 37999
Q ss_pred EEEeCCCCCCCCCeeEEEEEeCcccCCCCCceeEEEecccCCCCcccceEEEEEEE
Q 001830 73 YVYNHNRTTNSKSFLGKVRLTGTSFVPYSDAVVLHYPLEKRSIFSRVKGELGLKVF 128 (1008)
Q Consensus 73 ~V~d~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~L~~~~~~~~~~G~i~~~~~ 128 (1008)
.|+|+|... +|+|+|+..+|+..|.+- .+..+|..+.+..-..-.|.+++.
T Consensus 546 ~V~d~d~~~-~ddfiGQ~~lPv~~Lr~G----yR~V~L~~~~G~~l~~~~Ll~~f~ 596 (598)
T PLN02230 546 EVHEHDINE-KDDFGGQTCLPVSEIRQG----IHAVPLFNRKGVKYSSTRLLMRFE 596 (598)
T ss_pred EEEECCCCC-CCCEEEEEEcchHHhhCc----cceEeccCCCcCCCCCCeeEEEEE
Confidence 999997654 789999999999887542 235678766443222335555544
No 223
>PLN02952 phosphoinositide phospholipase C
Probab=98.86 E-value=2.2e-08 Score=115.57 Aligned_cols=115 Identities=27% Similarity=0.365 Sum_probs=90.4
Q ss_pred eEEEEEEEEeecCCCC------CCCCCCCcEEEEEECC-----eEEEeeeecCCCCCeEeeEEEEEeccCCcCeEEEEEE
Q 001830 272 RYLFVRVVKARDLPSK------DVTGSLDPFVEVKVGN-----YKGITKYYEKKQNPEWNEVFAFSRERIQSSVLEVAVK 340 (1008)
Q Consensus 272 ~~L~V~v~~a~~L~~~------d~~g~~dpyv~v~~~~-----~~~kT~~~~~t~nP~w~e~f~f~~~~~~~~~l~i~V~ 340 (1008)
..|.|+|+.|.+++.. +.....||||+|.+-+ .+.+|+++.++.||+|||+|.|.+..+.-..|+|.|+
T Consensus 470 ~~L~V~VisGq~l~lp~~~~~~~~~~~~D~yV~V~i~G~p~D~~~~kTkvi~nN~nPvWnE~F~F~i~~PELAllrf~V~ 549 (599)
T PLN02952 470 KTLKVKVYLGDGWRLDFSHTHFDSYSPPDFYTKMYIVGVPADNAKKKTKIIEDNWYPAWNEEFSFPLTVPELALLRIEVR 549 (599)
T ss_pred ceEEEEEEECcccCCCCccccCCccCCCCceEEEEEeccCCCCcceeeeeccCCCCcccCCeeEEEEEcCCccEEEEEEE
Confidence 5799999999987532 1123459999999865 4679999999999999999999987665578999999
Q ss_pred ecC-CCCCeeeEEEEEEccccCCCCCCCCCCccEEEEeecCCCCc-cceEEEEEEE
Q 001830 341 DKD-VVKDDYVGLVRFDLNEVPTRVPPDSPLAAEWYRLEDRKGEK-KKGELMLAVW 394 (1008)
Q Consensus 341 d~d-~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~-~~G~i~l~~~ 394 (1008)
|+| .+.++++|++.+++..|..+ -+|++|.+..+.. ..-.+.+.++
T Consensus 550 D~D~~~~ddfiGq~~lPv~~Lr~G--------yR~VpL~~~~G~~l~~a~Llv~f~ 597 (599)
T PLN02952 550 EYDMSEKDDFGGQTCLPVSELRPG--------IRSVPLHDKKGEKLKNVRLLMRFI 597 (599)
T ss_pred ecCCCCCCCeEEEEEcchhHhcCC--------ceeEeCcCCCCCCCCCEEEEEEEE
Confidence 999 56799999999999999875 3799998877664 2233444443
No 224
>cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae. This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=98.85 E-value=9.7e-09 Score=88.93 Aligned_cols=86 Identities=23% Similarity=0.368 Sum_probs=71.9
Q ss_pred EEEEEEeecCCCCCccCCCCCCCCeEEEEEECCE-EEEeeeecCCCCcccccEEEEEeeCCCceEEEEEEeCCCCCCCCC
Q 001830 602 LELGILNADGLHPMKTRDGRGTADTYCVAKYGHK-WVRTRTIINSLSAKYNEQYTWEVYDPATVLTVGVFDNSHIGGSSG 680 (1008)
Q Consensus 602 L~v~v~~a~~L~~~~~~~~~g~~dpyv~~~~~~~-~~~T~~~~~~~nP~wne~f~~~v~~~~~~l~i~V~d~~~~~~~~~ 680 (1008)
|.|+|..|+|+.........+.+||||.|++++. +.||++ +.||.|||.|.|+| +....+.|.|||.. +
T Consensus 1 L~I~V~~~RdvdH~~~~~~~~~~etyV~IKved~~kaRTr~---srnd~WnE~F~i~V-dk~nEiel~VyDk~------~ 70 (109)
T cd08689 1 LTITITSARDVDHIASPRFSKRPETYVSIKVEDVERARTKP---SRNDRWNEDFEIPV-EKNNEEEVIVYDKG------G 70 (109)
T ss_pred CEEEEEEEecCccccchhhccCCCcEEEEEECCEEEEeccC---CCCCcccceEEEEe-cCCcEEEEEEEeCC------C
Confidence 5789999999986542225678899999999987 789987 69999999999999 56778999999984 3
Q ss_pred CCCceeEEEEEEccccc
Q 001830 681 SKDVKIGKVRIRISTLE 697 (1008)
Q Consensus 681 ~~d~~lG~~~i~l~~l~ 697 (1008)
...-.||-.-|.|++|.
T Consensus 71 ~~~~Pi~llW~~~sdi~ 87 (109)
T cd08689 71 DQPVPVGLLWLRLSDIA 87 (109)
T ss_pred CeecceeeehhhHHHHH
Confidence 46778999999999983
No 225
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=98.81 E-value=2.1e-08 Score=114.76 Aligned_cols=119 Identities=20% Similarity=0.330 Sum_probs=92.7
Q ss_pred eEEEEEEEeeCCCCC-CC---CCCCCcEEEEEECCe-----eeccc-cCCCCCCCeeeeEEEEEecCCCCCCCceEEEEE
Q 001830 5 KLGVEVVSAYELMPK-DG---QGSSNAFVELHFDGQ-----KFRTT-TKEKDLTPVWNESFYFNISDPHNLSNLALDAYV 74 (1008)
Q Consensus 5 ~L~V~v~~a~~L~~~-d~---~g~~dPyv~v~~~~~-----~~~T~-~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~~~V 74 (1008)
.|.|+|.+++++... +. +..+||||.|.+-|- ..+|+ +..++-||.|+|+|+|.++.|+- ..|+|.|
T Consensus 617 tL~IkI~sGq~~~~~~~~~~~~~~~dP~v~VeI~Gvp~D~~~~~Tk~v~~NgfnP~W~e~f~F~l~vPEL---AliRF~V 693 (746)
T KOG0169|consen 617 TLKIKIISGQGWLPDFGKTKFGEISDPDVYVEIAGVPADCAEQKTKVVKNNGFNPIWDEEFEFQLSVPEL---ALIRFEV 693 (746)
T ss_pred eeEEEEEecCcccCCCCCCcccccCCCCEEEEEcccccchhhhhceeeccCCcCcccCCeEEEEEeccce---eEEEEEE
Confidence 699999999977543 22 246899999998643 58899 66788999999999999987653 3799999
Q ss_pred EeCCCCCCCCCeeEEEEEeCcccCCCCCceeEEEecccCCCCcccceEEEEEEEeec
Q 001830 75 YNHNRTTNSKSFLGKVRLTGTSFVPYSDAVVLHYPLEKRSIFSRVKGELGLKVFVTD 131 (1008)
Q Consensus 75 ~d~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~L~~~~~~~~~~G~i~~~~~~~~ 131 (1008)
+|+|..+ +|+|+|+..+|+..|.+- .+..+|..+.+.....-.|.+.+.+..
T Consensus 694 ~d~d~~~-~ddF~GQ~tlP~~~L~~G----yRhVpL~~~~G~~~~~asLfv~i~~~~ 745 (746)
T KOG0169|consen 694 HDYDYIG-KDDFIGQTTLPVSELRQG----YRHVPLLSREGEALSSASLFVRIAIVE 745 (746)
T ss_pred EecCCCC-cccccceeeccHHHhhCc----eeeeeecCCCCccccceeEEEEEEEec
Confidence 9997765 799999999999887542 335788877655556677777776643
No 226
>PLN02228 Phosphoinositide phospholipase C
Probab=98.81 E-value=4.6e-08 Score=112.21 Aligned_cols=124 Identities=15% Similarity=0.188 Sum_probs=95.3
Q ss_pred eeEEEEEEEeecCCCC---CccCCCCCCCCeEEEEEECC-----EEEEeeeecCCCCccc-ccEEEEEeeCCC-ceEEEE
Q 001830 599 IGVLELGILNADGLHP---MKTRDGRGTADTYCVAKYGH-----KWVRTRTIINSLSAKY-NEQYTWEVYDPA-TVLTVG 668 (1008)
Q Consensus 599 ~g~L~v~v~~a~~L~~---~~~~~~~g~~dpyv~~~~~~-----~~~~T~~~~~~~nP~w-ne~f~~~v~~~~-~~l~i~ 668 (1008)
...|.|+|+.|++|+. .+..+.....||||+|.+.+ ..++|+++.++.||.| ||.|.|.+..|. ..|+|.
T Consensus 430 ~~~L~I~ViSGq~l~lp~~~~~~~~~~~~DpyV~Vei~G~p~D~~~~rTk~~~n~~nP~W~~e~f~F~~~~pELA~lRf~ 509 (567)
T PLN02228 430 KTTLKVKIYTGEGWDLDFHLTHFDQYSPPDFFVKIGIAGVPRDTVSYRTETAVDQWFPIWGNDEFLFQLRVPELALLWFK 509 (567)
T ss_pred CceEEEEEEECCccCCCCCCCCCCCCCCCCcEEEEEEEecCCCCCcceeeccCCCCCceECCCeEEEEEEcCceeEEEEE
Confidence 3579999999999831 11112233479999998743 3579999988899999 999999998874 679999
Q ss_pred EEeCCCCCCCCCCCCceeEEEEEEcccccCCCeEEeeEeeeecCCCCCccccEEEEEEEEEec
Q 001830 669 VFDNSHIGGSSGSKDVKIGKVRIRISTLETGRVYTHSYPLLVLHPSGVKKMGELHLAIRFSYT 731 (1008)
Q Consensus 669 V~d~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~G~i~l~~~f~~~ 731 (1008)
|+|+|..+ .+++||+..||++.|+.|- +.++|.+..+.... ..+|.+.+.+...
T Consensus 510 V~D~d~~~-----~d~figq~~lPv~~Lr~GY---R~VpL~~~~G~~l~-~atLfv~~~~~~~ 563 (567)
T PLN02228 510 VQDYDNDT-----QNDFAGQTCLPLPELKSGV---RAVRLHDRAGKAYK-NTRLLVSFALDPP 563 (567)
T ss_pred EEeCCCCC-----CCCEEEEEEcchhHhhCCe---eEEEccCCCCCCCC-CeEEEEEEEEcCc
Confidence 99998665 7999999999999999885 67888755543332 3678887777543
No 227
>PLN02222 phosphoinositide phospholipase C 2
Probab=98.80 E-value=5.9e-08 Score=111.65 Aligned_cols=121 Identities=18% Similarity=0.231 Sum_probs=91.4
Q ss_pred eeEEEEEEEeecCCCC--Cc-cCCCCCCCCeEEEEEECC-----EEEEeeeecCCCCcccccEEEEEeeCCC-ceEEEEE
Q 001830 599 IGVLELGILNADGLHP--MK-TRDGRGTADTYCVAKYGH-----KWVRTRTIINSLSAKYNEQYTWEVYDPA-TVLTVGV 669 (1008)
Q Consensus 599 ~g~L~v~v~~a~~L~~--~~-~~~~~g~~dpyv~~~~~~-----~~~~T~~~~~~~nP~wne~f~~~v~~~~-~~l~i~V 669 (1008)
...|.|+|+.+++++- .+ ..+.....||||+|.+.+ ...+|+++.++.||.|||.|+|.+..|. ..|+|+|
T Consensus 451 ~~~L~V~Visgq~~~l~~~~~~~~~~~~~dpyV~Vei~G~p~D~~~~rTk~v~nn~nP~W~e~f~F~i~~PeLAllRf~V 530 (581)
T PLN02222 451 KTTLRVTIYMGEGWYFDFRHTHFDQYSPPDFYTRVGIAGVPGDTVMKKTKTLEDNWIPAWDEVFEFPLTVPELALLRLEV 530 (581)
T ss_pred cceEEEEEEEcccccCCCCccccCCCCCCCeeEEEEEeccCCCcceeeeEecCCCCCcccCCeeEEEEEcCceeEEEEEE
Confidence 3679999999998531 11 112234579999999843 4579999999999999999999998874 6799999
Q ss_pred EeCCCCCCCCCCCCceeEEEEEEcccccCCCeEEeeEeeeecCCCCCccccEEEEEEEE
Q 001830 670 FDNSHIGGSSGSKDVKIGKVRIRISTLETGRVYTHSYPLLVLHPSGVKKMGELHLAIRF 728 (1008)
Q Consensus 670 ~d~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~G~i~l~~~f 728 (1008)
+|+|..+ .+++||+..||++.|+.|- +..+|.+..+.... .-.|.+.+.|
T Consensus 531 ~d~D~~~-----~ddfigq~~lPv~~Lr~Gy---R~V~L~~~~g~~l~-~a~Lfv~~~~ 580 (581)
T PLN02222 531 HEYDMSE-----KDDFGGQTCLPVWELSQGI---RAFPLHSRKGEKYK-SVKLLVKVEF 580 (581)
T ss_pred EECCCCC-----CCcEEEEEEcchhhhhCcc---ceEEccCCCcCCCC-CeeEEEEEEe
Confidence 9998655 7999999999999999995 67888765443322 2455554443
No 228
>PLN02230 phosphoinositide phospholipase C 4
Probab=98.80 E-value=4.4e-08 Score=112.78 Aligned_cols=121 Identities=17% Similarity=0.230 Sum_probs=91.7
Q ss_pred eeEEEEEEEeecCCCCCcc---CCCCCCCCeEEEEEECC-----EEEEeeeecCCCCcccccEEEEEeeCCC-ceEEEEE
Q 001830 599 IGVLELGILNADGLHPMKT---RDGRGTADTYCVAKYGH-----KWVRTRTIINSLSAKYNEQYTWEVYDPA-TVLTVGV 669 (1008)
Q Consensus 599 ~g~L~v~v~~a~~L~~~~~---~~~~g~~dpyv~~~~~~-----~~~~T~~~~~~~nP~wne~f~~~v~~~~-~~l~i~V 669 (1008)
...|.|+|+.+++++.... .+.....||||+|.+-+ ...+|++..++.||.|||+|.|++.-|. ..|+|+|
T Consensus 468 ~~~L~V~VisGq~~~l~~~k~~~~~~s~~DpyV~Vei~Gvp~D~~~~kT~v~~n~~nP~Wneef~F~l~vPELAllRf~V 547 (598)
T PLN02230 468 KKTLKVKVCMGDGWLLDFKKTHFDSYSPPDFFVRVGIAGAPVDEVMEKTKIEYDTWTPIWNKEFIFPLAVPELALLRVEV 547 (598)
T ss_pred CcEEEEEEEEccCccCCCccccCCCCCCCCceEEEEEEECCCCCcccceeccCCCCCCccCCeeEEEEEcCceeEEEEEE
Confidence 3679999999998753211 12233469999998833 3468998888999999999999998874 6799999
Q ss_pred EeCCCCCCCCCCCCceeEEEEEEcccccCCCeEEeeEeeeecCCCCCccccEEEEEEEE
Q 001830 670 FDNSHIGGSSGSKDVKIGKVRIRISTLETGRVYTHSYPLLVLHPSGVKKMGELHLAIRF 728 (1008)
Q Consensus 670 ~d~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~G~i~l~~~f 728 (1008)
+|+|..+ +|+++|+..||++.|+.|- +..+|.+..+..... -.|.+.+.|
T Consensus 548 ~d~d~~~-----~ddfiGQ~~lPv~~Lr~Gy---R~V~L~~~~G~~l~~-~~Ll~~f~~ 597 (598)
T PLN02230 548 HEHDINE-----KDDFGGQTCLPVSEIRQGI---HAVPLFNRKGVKYSS-TRLLMRFEF 597 (598)
T ss_pred EECCCCC-----CCCEEEEEEcchHHhhCcc---ceEeccCCCcCCCCC-CeeEEEEEe
Confidence 9998655 8999999999999999995 678887655433222 455554443
No 229
>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=98.77 E-value=2.7e-09 Score=119.00 Aligned_cols=94 Identities=27% Similarity=0.386 Sum_probs=80.6
Q ss_pred ceEEEEEEEeeCCCCCCCCCCCCcEEEEEECCe-------eeccccCCCCCCCeeeeEEEEEecCCCCC-CCceEEEEEE
Q 001830 4 LKLGVEVVSAYELMPKDGQGSSNAFVELHFDGQ-------KFRTTTKEKDLTPVWNESFYFNISDPHNL-SNLALDAYVY 75 (1008)
Q Consensus 4 ~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~-------~~~T~~~~~t~nP~Wne~f~f~v~~~~~~-~~~~l~~~V~ 75 (1008)
..|.|.|+.|+++.+-|.+|.|||||+|.+.-. .++|+|+.+|+||+|+|+|+|.|...... ....|.|+|+
T Consensus 947 q~L~veVlhA~diipLD~NGlSDPFVviEl~P~~~fp~v~~q~T~V~~rtLnPVfDE~FeFsVp~e~c~te~Am~~FTVM 1026 (1103)
T KOG1328|consen 947 QTLVVEVLHAKDIIPLDSNGLSDPFVVIELIPKFRFPAVPVQKTKVVSRTLNPVFDETFEFSVPPEPCSTETAMLHFTVM 1026 (1103)
T ss_pred cchhhhhhccccccccCCCCCCCCeEEEEeccccccccchhhhhhhhhccccchhhhheeeecCccccccccceEEEEee
Confidence 578899999999999999999999999999743 58999999999999999999998632211 2457999999
Q ss_pred eCCCCCCCCCeeEEEEEeCcccC
Q 001830 76 NHNRTTNSKSFLGKVRLTGTSFV 98 (1008)
Q Consensus 76 d~~~~~~~d~~lG~~~i~l~~l~ 98 (1008)
|+|-.+ .+||-|++.+.|.++.
T Consensus 1027 DHD~L~-sNDFaGEA~L~Lg~vp 1048 (1103)
T KOG1328|consen 1027 DHDYLR-SNDFAGEAFLELGDVP 1048 (1103)
T ss_pred ccceec-ccccchHHHHhhCCCC
Confidence 997765 8899999999988874
No 230
>PLN02222 phosphoinositide phospholipase C 2
Probab=98.71 E-value=1.2e-07 Score=109.06 Aligned_cols=115 Identities=27% Similarity=0.342 Sum_probs=90.4
Q ss_pred eEEEEEEEEeecCC--CC----CCCCCCCcEEEEEECC-----eEEEeeeecCCCCCeEeeEEEEEeccCCcCeEEEEEE
Q 001830 272 RYLFVRVVKARDLP--SK----DVTGSLDPFVEVKVGN-----YKGITKYYEKKQNPEWNEVFAFSRERIQSSVLEVAVK 340 (1008)
Q Consensus 272 ~~L~V~v~~a~~L~--~~----d~~g~~dpyv~v~~~~-----~~~kT~~~~~t~nP~w~e~f~f~~~~~~~~~l~i~V~ 340 (1008)
..|.|+|+.+.++. .. +.....||||+|.+.+ .+.+|+++.++.||+|||+|.|.+..+.-..|+|.|+
T Consensus 452 ~~L~V~Visgq~~~l~~~~~~~~~~~~~dpyV~Vei~G~p~D~~~~rTk~v~nn~nP~W~e~f~F~i~~PeLAllRf~V~ 531 (581)
T PLN02222 452 TTLRVTIYMGEGWYFDFRHTHFDQYSPPDFYTRVGIAGVPGDTVMKKTKTLEDNWIPAWDEVFEFPLTVPELALLRLEVH 531 (581)
T ss_pred ceEEEEEEEcccccCCCCccccCCCCCCCeeEEEEEeccCCCcceeeeEecCCCCCcccCCeeEEEEEcCceeEEEEEEE
Confidence 47999999998753 11 1234579999999964 3578999999999999999999987665678999999
Q ss_pred ecC-CCCCeeeEEEEEEccccCCCCCCCCCCccEEEEeecCCCCccc-eEEEEEEE
Q 001830 341 DKD-VVKDDYVGLVRFDLNEVPTRVPPDSPLAAEWYRLEDRKGEKKK-GELMLAVW 394 (1008)
Q Consensus 341 d~d-~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~-G~i~l~~~ 394 (1008)
|+| ..+++++|++.+++..|..+ -+.++|.+..+.... ..+.+.+.
T Consensus 532 d~D~~~~ddfigq~~lPv~~Lr~G--------yR~V~L~~~~g~~l~~a~Lfv~~~ 579 (581)
T PLN02222 532 EYDMSEKDDFGGQTCLPVWELSQG--------IRAFPLHSRKGEKYKSVKLLVKVE 579 (581)
T ss_pred ECCCCCCCcEEEEEEcchhhhhCc--------cceEEccCCCcCCCCCeeEEEEEE
Confidence 998 57799999999999999875 367899888776633 34555443
No 231
>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]
Probab=98.69 E-value=7.8e-08 Score=108.75 Aligned_cols=102 Identities=22% Similarity=0.330 Sum_probs=84.7
Q ss_pred eEEEEEEEeecCCCCCccCCCCCCCCeEEEEEECC-----EEEEeeee-cCCCCcccc-cEEEEEeeCCC-ceEEEEEEe
Q 001830 600 GVLELGILNADGLHPMKTRDGRGTADTYCVAKYGH-----KWVRTRTI-INSLSAKYN-EQYTWEVYDPA-TVLTVGVFD 671 (1008)
Q Consensus 600 g~L~v~v~~a~~L~~~~~~~~~g~~dpyv~~~~~~-----~~~~T~~~-~~~~nP~wn-e~f~~~v~~~~-~~l~i~V~d 671 (1008)
-.|.|.|+.|+.|+. .++|...|||+|++-+ .+++|+++ .+.+||+|| |.|+|+|.+|. ..|++.|+|
T Consensus 1065 ~~lsv~vigaRHL~k----~gr~i~cPfVevEiiGa~~Dt~~~~t~~V~dNGlnPiWn~e~ftFeI~nPe~A~lRF~V~e 1140 (1267)
T KOG1264|consen 1065 MTLSVKVLGARHLPK----LGRSIACPFVEVEIIGAEYDTNKFKTTVVNDNGLNPIWNPEKFTFEIYNPEFAFLRFVVYE 1140 (1267)
T ss_pred eEEEEEEeecccccc----CCCCccCCcEEEEEeccccCCCceEEEEeccCCCCCCCCCcceEEEeeCCceEEEEEEEec
Confidence 678999999999993 4577788999998733 44555554 567999999 99999999984 679999999
Q ss_pred CCCCCCCCCCCCceeEEEEEEcccccCCCeEEeeEeeeecCC
Q 001830 672 NSHIGGSSGSKDVKIGKVRIRISTLETGRVYTHSYPLLVLHP 713 (1008)
Q Consensus 672 ~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~ 713 (1008)
.|.++ ...|||++..|+..|..|- +..||++...
T Consensus 1141 eDmfs-----~~~FiaqA~yPv~~ik~Gf---RsVpLkN~yS 1174 (1267)
T KOG1264|consen 1141 EDMFS-----DPNFLAQATYPVKAIKSGF---RSVPLKNGYS 1174 (1267)
T ss_pred ccccC-----Ccceeeeeecchhhhhccc---eeeecccCch
Confidence 99988 6779999999999999885 7888875433
No 232
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=98.68 E-value=1.1e-07 Score=108.93 Aligned_cols=120 Identities=21% Similarity=0.337 Sum_probs=93.6
Q ss_pred EEEEEEEeecCCCCCccCC-CCCCCCeEEEEEECCE-----EEEeeeec-CCCCcccccEEEEEeeCCC-ceEEEEEEeC
Q 001830 601 VLELGILNADGLHPMKTRD-GRGTADTYCVAKYGHK-----WVRTRTII-NSLSAKYNEQYTWEVYDPA-TVLTVGVFDN 672 (1008)
Q Consensus 601 ~L~v~v~~a~~L~~~~~~~-~~g~~dpyv~~~~~~~-----~~~T~~~~-~~~nP~wne~f~~~v~~~~-~~l~i~V~d~ 672 (1008)
.|.|.|+.++++.+...+. ....+||||.|++.|. ..+|++++ ++-||.|+|+|+|.+..|. .-|.|.|+|+
T Consensus 617 tL~IkI~sGq~~~~~~~~~~~~~~~dP~v~VeI~Gvp~D~~~~~Tk~v~~NgfnP~W~e~f~F~l~vPELAliRF~V~d~ 696 (746)
T KOG0169|consen 617 TLKIKIISGQGWLPDFGKTKFGEISDPDVYVEIAGVPADCAEQKTKVVKNNGFNPIWDEEFEFQLSVPELALIRFEVHDY 696 (746)
T ss_pred eeEEEEEecCcccCCCCCCcccccCCCCEEEEEcccccchhhhhceeeccCCcCcccCCeEEEEEeccceeEEEEEEEec
Confidence 7999999999777543222 2356799999998653 46999665 5689999999999999885 5799999999
Q ss_pred CCCCCCCCCCCceeEEEEEEcccccCCCeEEeeEeeeecCCCCCccccEEEEEEEEE
Q 001830 673 SHIGGSSGSKDVKIGKVRIRISTLETGRVYTHSYPLLVLHPSGVKKMGELHLAIRFS 729 (1008)
Q Consensus 673 ~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~G~i~l~~~f~ 729 (1008)
|..+ +|+|+|++.||++.|..|- +-+||.+..+..- ..-+|.+.+.+.
T Consensus 697 d~~~-----~ddF~GQ~tlP~~~L~~Gy---RhVpL~~~~G~~~-~~asLfv~i~~~ 744 (746)
T KOG0169|consen 697 DYIG-----KDDFIGQTTLPVSELRQGY---RHVPLLSREGEAL-SSASLFVRIAIV 744 (746)
T ss_pred CCCC-----cccccceeeccHHHhhCce---eeeeecCCCCccc-cceeEEEEEEEe
Confidence 9876 8999999999999999995 6788876543322 236666666653
No 233
>PLN02228 Phosphoinositide phospholipase C
Probab=98.67 E-value=1.9e-07 Score=107.23 Aligned_cols=118 Identities=23% Similarity=0.300 Sum_probs=94.0
Q ss_pred eEEEEEEEEeecCCC---C---CCCCCCCcEEEEEECC-----eEEEeeeecCCCCCeE-eeEEEEEeccCCcCeEEEEE
Q 001830 272 RYLFVRVVKARDLPS---K---DVTGSLDPFVEVKVGN-----YKGITKYYEKKQNPEW-NEVFAFSRERIQSSVLEVAV 339 (1008)
Q Consensus 272 ~~L~V~v~~a~~L~~---~---d~~g~~dpyv~v~~~~-----~~~kT~~~~~t~nP~w-~e~f~f~~~~~~~~~l~i~V 339 (1008)
..|.|+|+.|.+|+. . +.....||||+|.+.+ .+++|+++.++.||+| ||+|.|.+..+.-..|+|.|
T Consensus 431 ~~L~I~ViSGq~l~lp~~~~~~~~~~~~DpyV~Vei~G~p~D~~~~rTk~~~n~~nP~W~~e~f~F~~~~pELA~lRf~V 510 (567)
T PLN02228 431 TTLKVKIYTGEGWDLDFHLTHFDQYSPPDFFVKIGIAGVPRDTVSYRTETAVDQWFPIWGNDEFLFQLRVPELALLWFKV 510 (567)
T ss_pred ceEEEEEEECCccCCCCCCCCCCCCCCCCcEEEEEEEecCCCCCcceeeccCCCCCceECCCeEEEEEEcCceeEEEEEE
Confidence 369999999998732 1 1223479999999864 3579999988899999 99999998766557899999
Q ss_pred EecC-CCCCeeeEEEEEEccccCCCCCCCCCCccEEEEeecCCCCc-cceEEEEEEEEec
Q 001830 340 KDKD-VVKDDYVGLVRFDLNEVPTRVPPDSPLAAEWYRLEDRKGEK-KKGELMLAVWYGT 397 (1008)
Q Consensus 340 ~d~d-~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~-~~G~i~l~~~~~~ 397 (1008)
+|+| .+.++++|++.+++..|..+ -+.++|.+..+.. ....|.+.+.+.+
T Consensus 511 ~D~d~~~~d~figq~~lPv~~Lr~G--------YR~VpL~~~~G~~l~~atLfv~~~~~~ 562 (567)
T PLN02228 511 QDYDNDTQNDFAGQTCLPLPELKSG--------VRAVRLHDRAGKAYKNTRLLVSFALDP 562 (567)
T ss_pred EeCCCCCCCCEEEEEEcchhHhhCC--------eeEEEccCCCCCCCCCeEEEEEEEEcC
Confidence 9998 67899999999999999865 3678998888776 3456777776643
No 234
>KOG1327 consensus Copine [Signal transduction mechanisms]
Probab=98.65 E-value=2.1e-07 Score=103.84 Aligned_cols=180 Identities=19% Similarity=0.229 Sum_probs=124.7
Q ss_pred EEEeeeccCCCCCCcccceeEEEeeCCCCCcEEEEEEeccC----CCCCceeEEEEEeCccccccccCCcccceeEEccc
Q 001830 469 VLKTKSVQSRTLNPVWNEDMMFVASEPFEDHLILTVEDRVG----PNKDETIGKVVIPLHSVEKRADDRIVHTRWFNLEK 544 (1008)
Q Consensus 469 ~~kT~~v~~~~~nP~w~e~f~f~v~~~~~~~l~i~v~d~d~----~~~d~~lG~~~i~l~~l~~~~~~~~~~~~w~~L~~ 544 (1008)
..+|..+. +.+||.|.+.|.+.......+.+++.++|.+. ....+|+|++...+..+..... ...-+.+++
T Consensus 42 ~~rte~i~-~~~~p~f~~~~~l~y~fE~vQ~l~~~~~~~~~~~~~l~~~dflg~~~c~l~~ivs~~~----~~~~l~~~~ 116 (529)
T KOG1327|consen 42 VGRTEVIR-NVLNPFFTKKFLLQYRFEKVQLLRFEVYDIDSRTPDLSSADFLGTAECTLSQIVSSSG----LTGPLLLKP 116 (529)
T ss_pred ccceeeee-ccCCccceeeechhheeeeeeeEEEEEeecCCccCCcchhcccceeeeehhhhhhhhh----hhhhhhccc
Confidence 44777774 89999999999988887778899999999764 3567899999999998875431 111111221
Q ss_pred CccccccCCCccCCccCcceEEEEeecCCccccCCccccCCCCCccccccCCCceeEEEEEEEeecCCCCCccCCCCCCC
Q 001830 545 SVSAALDGDNAKKDKFSSRLHLRVCLDGGYHVLDESTHYSSDLRPTAKQLWKPSIGVLELGILNADGLHPMKTRDGRGTA 624 (1008)
Q Consensus 545 ~~~~~~~~~~~~~~~~~g~i~l~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~g~L~v~v~~a~~L~~~~~~~~~g~~ 624 (1008)
. .....|.|.+.+.-... ...+ .....+|++|.+ +|..+++
T Consensus 117 ~-----------~~~~~g~iti~aee~~~------------------------~~~~-~~~~~~~~~ld~---kd~f~ks 157 (529)
T KOG1327|consen 117 G-----------KNAGSGTITISAEEDES------------------------DNDV-VQFSFRAKNLDP---KDFFSKS 157 (529)
T ss_pred C-----------ccCCcccEEEEeecccc------------------------cCce-eeeeeeeeecCc---ccccccC
Confidence 1 11124555555432110 0011 222346888884 5789999
Q ss_pred CeEEEEEE--C-CE---EEEeeeecCCCCcccccEEEEEee-----CCCceEEEEEEeCCCCCCCCCCCCceeEEEEEEc
Q 001830 625 DTYCVAKY--G-HK---WVRTRTIINSLSAKYNEQYTWEVY-----DPATVLTVGVFDNSHIGGSSGSKDVKIGKVRIRI 693 (1008)
Q Consensus 625 dpyv~~~~--~-~~---~~~T~~~~~~~nP~wne~f~~~v~-----~~~~~l~i~V~d~~~~~~~~~~~d~~lG~~~i~l 693 (1008)
|||..+.- + +. .++|.+++++++|.|.+ |.++.. ++...++|.|||++..+ ++++||++..++
T Consensus 158 d~~l~~~~~~~d~s~~~~~~tEv~~n~l~p~w~~-~~i~~~~l~~~~~~~~~~i~~~d~~~~~-----~~~~ig~~~tt~ 231 (529)
T KOG1327|consen 158 DPYLEFYKRVDDGSTQMLYRTEVVKNTLNPQWAP-FSISLQSLCSKDGNRPIQIECYDYDSNG-----KHDLIGKFQTTL 231 (529)
T ss_pred CcceEEEEecCCCceeeccccceeccCCCCcccc-cccchhhhcccCCCCceEEEEeccCCCC-----CcCceeEecccH
Confidence 99998753 2 22 36999999999999975 555443 34567999999999765 889999999999
Q ss_pred ccccC
Q 001830 694 STLET 698 (1008)
Q Consensus 694 ~~l~~ 698 (1008)
+++..
T Consensus 232 ~~~~~ 236 (529)
T KOG1327|consen 232 SELQE 236 (529)
T ss_pred HHhcc
Confidence 99863
No 235
>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]
Probab=98.61 E-value=1e-07 Score=107.86 Aligned_cols=91 Identities=26% Similarity=0.429 Sum_probs=75.3
Q ss_pred ceEEEEEEEeeCCCCCCCCCCCCcEEEEEEC------CeeeccccCCCCCCCeee-eEEEEEecCCCCCCCceEEEEEEe
Q 001830 4 LKLGVEVVSAYELMPKDGQGSSNAFVELHFD------GQKFRTTTKEKDLTPVWN-ESFYFNISDPHNLSNLALDAYVYN 76 (1008)
Q Consensus 4 ~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~------~~~~~T~~~~~t~nP~Wn-e~f~f~v~~~~~~~~~~l~~~V~d 76 (1008)
..|.|.|+.||.|+. .+.|.+.|||+|.+- +..++|.++.+++||+|| |+|+|.+.+|+- ..|+|.|+|
T Consensus 1065 ~~lsv~vigaRHL~k-~gr~i~cPfVevEiiGa~~Dt~~~~t~~V~dNGlnPiWn~e~ftFeI~nPe~---A~lRF~V~e 1140 (1267)
T KOG1264|consen 1065 MTLSVKVLGARHLPK-LGRSIACPFVEVEIIGAEYDTNKFKTTVVNDNGLNPIWNPEKFTFEIYNPEF---AFLRFVVYE 1140 (1267)
T ss_pred eEEEEEEeecccccc-CCCCccCCcEEEEEeccccCCCceEEEEeccCCCCCCCCCcceEEEeeCCce---EEEEEEEec
Confidence 578999999999994 345677899999984 334677788999999999 999999987653 589999999
Q ss_pred CCCCCCCCCeeEEEEEeCcccCC
Q 001830 77 HNRTTNSKSFLGKVRLTGTSFVP 99 (1008)
Q Consensus 77 ~~~~~~~d~~lG~~~i~l~~l~~ 99 (1008)
.|.++ ...|||++.+|+..+..
T Consensus 1141 eDmfs-~~~FiaqA~yPv~~ik~ 1162 (1267)
T KOG1264|consen 1141 EDMFS-DPNFLAQATYPVKAIKS 1162 (1267)
T ss_pred ccccC-Ccceeeeeecchhhhhc
Confidence 98887 44699999999888753
No 236
>PLN02352 phospholipase D epsilon
Probab=98.51 E-value=7e-07 Score=104.87 Aligned_cols=118 Identities=19% Similarity=0.249 Sum_probs=91.7
Q ss_pred eeEEEEEEEeecCCCCCc---cCCCCCCCCeEEEEEECCEE-EEeeeecCCCCcccccEEEEEeeCCC-ceEEEEEEeCC
Q 001830 599 IGVLELGILNADGLHPMK---TRDGRGTADTYCVAKYGHKW-VRTRTIINSLSAKYNEQYTWEVYDPA-TVLTVGVFDNS 673 (1008)
Q Consensus 599 ~g~L~v~v~~a~~L~~~~---~~~~~g~~dpyv~~~~~~~~-~~T~~~~~~~nP~wne~f~~~v~~~~-~~l~i~V~d~~ 673 (1008)
-|.|.++|++|+-+...- ..-+.+ .||||.|.+++.+ .|| .+..||.|||.|.+.+.++. ..++|+|.|.
T Consensus 9 hg~l~~~i~~~~~~~~~~~~~~~~~~~-~~~y~tv~~~~~~v~rt---~~~~~p~w~e~f~i~~ah~~~~~~~f~vk~~- 83 (758)
T PLN02352 9 HGTLEATIFDATPYTPPFPFNCIFLNG-KATYVTIKIGNKKVAKT---SHEYDRVWNQTFQILCAHPLDSTITITLKTK- 83 (758)
T ss_pred ccceEEEEEEeeehhhcccccccccCC-CCceEEEEeCCcEEecC---CCCCCCccccceeEEeeeecCCcEEEEEecC-
Confidence 499999999998332110 001122 3999999998865 488 55679999999999999987 6899999992
Q ss_pred CCCCCCCCCCceeEEEEEEcccccCCCe-EEeeEeeeecCCCCCccccEEEEEEEEEec
Q 001830 674 HIGGSSGSKDVKIGKVRIRISTLETGRV-YTHSYPLLVLHPSGVKKMGELHLAIRFSYT 731 (1008)
Q Consensus 674 ~~~~~~~~~d~~lG~~~i~l~~l~~~~~-~~~~~~L~~~~~~~~~~~G~i~l~~~f~~~ 731 (1008)
..+||++.||+.+|..|.. ++.|+++...+.+.. +...|++.++|..-
T Consensus 84 ---------~~~ig~~~~p~~~~~~g~~~~~~~~~~~~~~~~p~-~~~~~~~~~~~~~~ 132 (758)
T PLN02352 84 ---------CSILGRFHIQAHQIVTEASFINGFFPLIMENGKPN-PELKLRFMLWFRPA 132 (758)
T ss_pred ---------CeEEEEEEEEHHHhhCCCcccceEEEcccCCCCCC-CCCEEEEEEEEEEh
Confidence 5899999999999988865 899999987665443 22599999999654
No 237
>KOG1327 consensus Copine [Signal transduction mechanisms]
Probab=98.47 E-value=1.5e-06 Score=97.31 Aligned_cols=179 Identities=20% Similarity=0.222 Sum_probs=125.1
Q ss_pred EEeeeecCCCCCeEeeEEEEEeccCCcCeEEEEEEecCC-----CCCeeeEEEEEEccccCCCCCCCCCCccEEEEeecC
Q 001830 306 GITKYYEKKQNPEWNEVFAFSRERIQSSVLEVAVKDKDV-----VKDDYVGLVRFDLNEVPTRVPPDSPLAAEWYRLEDR 380 (1008)
Q Consensus 306 ~kT~~~~~t~nP~w~e~f~f~~~~~~~~~l~i~V~d~d~-----~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~ 380 (1008)
.+|.++++.+||.|.+.|.....-...+.|++.++|.+. ...+|+|++...+.++.... ....-+.+...
T Consensus 43 ~rte~i~~~~~p~f~~~~~l~y~fE~vQ~l~~~~~~~~~~~~~l~~~dflg~~~c~l~~ivs~~-----~~~~~l~~~~~ 117 (529)
T KOG1327|consen 43 GRTEVIRNVLNPFFTKKFLLQYRFEKVQLLRFEVYDIDSRTPDLSSADFLGTAECTLSQIVSSS-----GLTGPLLLKPG 117 (529)
T ss_pred cceeeeeccCCccceeeechhheeeeeeeEEEEEeecCCccCCcchhcccceeeeehhhhhhhh-----hhhhhhhcccC
Confidence 488999999999999998877554446789999999862 35799999999999987642 11111222221
Q ss_pred CCCccceEEEEEEEEeccCCCcCCCcCCCCCCCCCCCCCCcccccccccccCCceeEEEEEEEEeecCCCCCCCCCCCcE
Q 001830 381 KGEKKKGELMLAVWYGTQADEAFPDAWHSDAVTPTDSPSNVSTHIRSKVYHSPRLWYVRVNVMEAQDLVISDKNRFPDAY 460 (1008)
Q Consensus 381 ~~~~~~G~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~v~v~~a~~L~~~d~~g~~dpy 460 (1008)
.....|+|.+.+.-. .+. .....-..+|++|...|..+++|||
T Consensus 118 -~~~~~g~iti~aee~-----------~~~-------------------------~~~~~~~~~~~~ld~kd~f~ksd~~ 160 (529)
T KOG1327|consen 118 -KNAGSGTITISAEED-----------ESD-------------------------NDVVQFSFRAKNLDPKDFFSKSDPY 160 (529)
T ss_pred -ccCCcccEEEEeecc-----------ccc-------------------------CceeeeeeeeeecCcccccccCCcc
Confidence 111346666655210 000 0122233458999999999999999
Q ss_pred EEEEEC--C----EEEEeeeccCCCCCCcccceeEEEeeCC----CCCcEEEEEEeccCCCCCceeEEEEEeCccccc
Q 001830 461 VKVQIG--N----QVLKTKSVQSRTLNPVWNEDMMFVASEP----FEDHLILTVEDRVGPNKDETIGKVVIPLHSVEK 528 (1008)
Q Consensus 461 v~v~l~--~----~~~kT~~v~~~~~nP~w~e~f~f~v~~~----~~~~l~i~v~d~d~~~~d~~lG~~~i~l~~l~~ 528 (1008)
..+.-. . ..++|.++ ++++||.|.. |.+..... ....+.+.+||++..+++++||.+..++.++..
T Consensus 161 l~~~~~~~d~s~~~~~~tEv~-~n~l~p~w~~-~~i~~~~l~~~~~~~~~~i~~~d~~~~~~~~~ig~~~tt~~~~~~ 236 (529)
T KOG1327|consen 161 LEFYKRVDDGSTQMLYRTEVV-KNTLNPQWAP-FSISLQSLCSKDGNRPIQIECYDYDSNGKHDLIGKFQTTLSELQE 236 (529)
T ss_pred eEEEEecCCCceeecccccee-ccCCCCcccc-cccchhhhcccCCCCceEEEEeccCCCCCcCceeEecccHHHhcc
Confidence 988862 1 36788877 5999999976 33333222 235788999999999899999999999998864
No 238
>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=98.40 E-value=2e-07 Score=109.67 Aligned_cols=112 Identities=25% Similarity=0.367 Sum_probs=93.3
Q ss_pred CcccccccCcCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eEEEeeeecCCCCCeEeeEEEEE---eccC
Q 001830 259 DLRASTYDLVEQMRYLFVRVVKARDLPSKDVTGSLDPFVEVKVGN-----YKGITKYYEKKQNPEWNEVFAFS---RERI 330 (1008)
Q Consensus 259 ~~~~~~~~~~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~-----~~~kT~~~~~t~nP~w~e~f~f~---~~~~ 330 (1008)
-+++..|. .|.|.|.|..+++|+...-+..+||||+.++.+ .+.||+++++|+||.|||.+.+. .+.+
T Consensus 1515 V~LsIsY~----~~~LtImV~H~K~L~~Lqdg~~P~pyVK~YLlPdp~k~sKRKTKvvrkt~~PTfnE~LvY~g~p~~~l 1590 (1639)
T KOG0905|consen 1515 VKLSISYN----NGTLTIMVMHAKGLALLQDGQDPDPYVKTYLLPDPRKTSKRKTKVVRKTRNPTFNEMLVYDGFPKEIL 1590 (1639)
T ss_pred EEEEEEEc----CceEEEEhhhhcccccccCCCCCCcceeEEecCCchHhhhhhhccccccCCCchhhheeecCCchhhh
Confidence 35667775 579999999999997665567799999999986 25789999999999999999886 4556
Q ss_pred CcCeEEEEEEecC-CCCCeeeEEEEEEccccCCCCCCCCCCccEEEEeec
Q 001830 331 QSSVLEVAVKDKD-VVKDDYVGLVRFDLNEVPTRVPPDSPLAAEWYRLED 379 (1008)
Q Consensus 331 ~~~~l~i~V~d~d-~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~ 379 (1008)
....|.+.||..+ ...+.++|.+.|+|.++... .....||+|..
T Consensus 1591 ~qReLQ~sVls~~~~~en~~lg~v~i~L~~~~l~-----kE~~~Wy~lg~ 1635 (1639)
T KOG0905|consen 1591 QQRELQVSVLSNGGLLENVFLGGVNIPLLKVDLL-----KESVGWYNLGA 1635 (1639)
T ss_pred hhheeeeeeecccceeeeeeeeeeecchhhcchh-----hhhcceeeccc
Confidence 6688999999998 66799999999999999875 23458999864
No 239
>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=98.22 E-value=1.1e-06 Score=103.77 Aligned_cols=109 Identities=19% Similarity=0.183 Sum_probs=88.6
Q ss_pred CceEEEEEEEeeCCCCCCCCCCCCcEEEEEECC-----eeeccccCCCCCCCeeeeEEEEEecCCCCCCCceEEEEEEeC
Q 001830 3 HLKLGVEVVSAYELMPKDGQGSSNAFVELHFDG-----QKFRTTTKEKDLTPVWNESFYFNISDPHNLSNLALDAYVYNH 77 (1008)
Q Consensus 3 ~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~-----~~~~T~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~~~V~d~ 77 (1008)
++.|.|-|..|++|+--..+.-+||||+.++.- .+++|+++++|.||.|||...+.--..+.++...|.+.||..
T Consensus 1523 ~~~LtImV~H~K~L~~Lqdg~~P~pyVK~YLlPdp~k~sKRKTKvvrkt~~PTfnE~LvY~g~p~~~l~qReLQ~sVls~ 1602 (1639)
T KOG0905|consen 1523 NGTLTIMVMHAKGLALLQDGQDPDPYVKTYLLPDPRKTSKRKTKVVRKTRNPTFNEMLVYDGFPKEILQQRELQVSVLSN 1602 (1639)
T ss_pred CceEEEEhhhhcccccccCCCCCCcceeEEecCCchHhhhhhhccccccCCCchhhheeecCCchhhhhhheeeeeeecc
Confidence 468999999999996554455799999999952 258999999999999999999883223455667899999999
Q ss_pred CCCCCCCCeeEEEEEeCcccCCCCCceeEEEecccC
Q 001830 78 NRTTNSKSFLGKVRLTGTSFVPYSDAVVLHYPLEKR 113 (1008)
Q Consensus 78 ~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~L~~~ 113 (1008)
+.+. .+.|||.+.|+|.++....+.. .||+|...
T Consensus 1603 ~~~~-en~~lg~v~i~L~~~~l~kE~~-~Wy~lg~~ 1636 (1639)
T KOG0905|consen 1603 GGLL-ENVFLGGVNIPLLKVDLLKESV-GWYNLGAC 1636 (1639)
T ss_pred ccee-eeeeeeeeecchhhcchhhhhc-ceeecccc
Confidence 7775 7899999999999987665554 49999764
No 240
>PLN02352 phospholipase D epsilon
Probab=98.20 E-value=1.1e-05 Score=95.11 Aligned_cols=118 Identities=17% Similarity=0.320 Sum_probs=92.0
Q ss_pred eEEEEEEEEeecCCCC----CC-CCCCCcEEEEEECCeE-EEeeeecCCCCCeEeeEEEEEeccCCcCeEEEEEEecCCC
Q 001830 272 RYLFVRVVKARDLPSK----DV-TGSLDPFVEVKVGNYK-GITKYYEKKQNPEWNEVFAFSRERIQSSVLEVAVKDKDVV 345 (1008)
Q Consensus 272 ~~L~V~v~~a~~L~~~----d~-~g~~dpyv~v~~~~~~-~kT~~~~~t~nP~w~e~f~f~~~~~~~~~l~i~V~d~d~~ 345 (1008)
|.|.++|.+|+-+... +. ....||||.|.+++.+ .|| .+..||.|+|+|...+.......+.|+|+|
T Consensus 10 g~l~~~i~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~~~v~rt---~~~~~p~w~e~f~i~~ah~~~~~~~f~vk~---- 82 (758)
T PLN02352 10 GTLEATIFDATPYTPPFPFNCIFLNGKATYVTIKIGNKKVAKT---SHEYDRVWNQTFQILCAHPLDSTITITLKT---- 82 (758)
T ss_pred cceEEEEEEeeehhhcccccccccCCCCceEEEEeCCcEEecC---CCCCCCccccceeEEeeeecCCcEEEEEec----
Confidence 6899999999843221 11 1223999999999854 578 556699999999999987765679999999
Q ss_pred CCeeeEEEEEEccccCCCCCCCCCCccEEEEeecCCCCccce-EEEEEEEEeccCC
Q 001830 346 KDDYVGLVRFDLNEVPTRVPPDSPLAAEWYRLEDRKGEKKKG-ELMLAVWYGTQAD 400 (1008)
Q Consensus 346 ~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~G-~i~l~~~~~~~~~ 400 (1008)
+..+||.+.+++.++..+. .....|+++.+..+....| .|+++++|.+...
T Consensus 83 ~~~~ig~~~~p~~~~~~g~----~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 134 (758)
T PLN02352 83 KCSILGRFHIQAHQIVTEA----SFINGFFPLIMENGKPNPELKLRFMLWFRPAEL 134 (758)
T ss_pred CCeEEEEEEEEHHHhhCCC----cccceEEEcccCCCCCCCCCEEEEEEEEEEhhh
Confidence 3789999999999998762 3378999999887766555 8999999987643
No 241
>cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins. C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc
Probab=98.15 E-value=4.9e-06 Score=74.45 Aligned_cols=107 Identities=21% Similarity=0.360 Sum_probs=80.4
Q ss_pred EEEEEEeecCCCCCcc------CC----CCCCCCeEEEEEE----CCEEEEeeeecCCCCcccccEEEEEee--------
Q 001830 602 LELGILNADGLHPMKT------RD----GRGTADTYCVAKY----GHKWVRTRTIINSLSAKYNEQYTWEVY-------- 659 (1008)
Q Consensus 602 L~v~v~~a~~L~~~~~------~~----~~g~~dpyv~~~~----~~~~~~T~~~~~~~nP~wne~f~~~v~-------- 659 (1008)
|.|.|++|.||+..-. .+ ..-..++||++.+ +++..+|+++.++-.|.|+..++|++.
T Consensus 1 lsv~I~RA~GLqaAA~~la~~~~~l~y~a~VGVN~yv~i~lSFl~~~e~r~TrtVArSFcPeF~Hh~Efpc~lv~~~~~G 80 (143)
T cd08683 1 LSVQIHRASGLQAAARALAEQDPSLQYSATVGVNSYVTIHLSFLPEKELRRTRTVARSFCPEFNHHVEFPCNLVVQRNSG 80 (143)
T ss_pred CeEEeehhhhHHHHHHHHhhhCcccccceecccceEEEEEeccCCCCceeeccchhhhcCCCccceEEEecccEEEcCCC
Confidence 4678889999885210 01 1223589999985 456789999999999999999999875
Q ss_pred CC--------CceEEEEEEeCCCCCCCC-----CCCCceeEEEEEEcccc-cCCCeEEeeEee
Q 001830 660 DP--------ATVLTVGVFDNSHIGGSS-----GSKDVKIGKVRIRISTL-ETGRVYTHSYPL 708 (1008)
Q Consensus 660 ~~--------~~~l~i~V~d~~~~~~~~-----~~~d~~lG~~~i~l~~l-~~~~~~~~~~~L 708 (1008)
.. ..++.++||..+..+... ..+|-.||.+.||+.+| .+...++.|||+
T Consensus 81 e~~sLAElLe~~eiil~vwHr~~~s~~~~~~~~~~~DilLG~v~IPl~~Ll~~rsGitGW~pi 143 (143)
T cd08683 81 EAISLAELLESAEIILEVWHRNPKSAGDTIKIETSGDILLGTVKIPLRDLLTKRSGITGWYPI 143 (143)
T ss_pred ccccHHHHhhcceEEeeeeecCCccccceeccCcCCcEEEEEEEeeHHHHhhcccCccccccC
Confidence 11 357999999988765332 46788999999999997 445567899985
No 242
>cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins. C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc
Probab=98.00 E-value=9.5e-06 Score=72.62 Aligned_cols=105 Identities=20% Similarity=0.303 Sum_probs=78.1
Q ss_pred EEEEEEEeeCCCCC---------CC----CCCCCcEEEEEEC----CeeeccccCCCCCCCeeeeEEEEEecC------C
Q 001830 6 LGVEVVSAYELMPK---------DG----QGSSNAFVELHFD----GQKFRTTTKEKDLTPVWNESFYFNISD------P 62 (1008)
Q Consensus 6 L~V~v~~a~~L~~~---------d~----~g~~dPyv~v~~~----~~~~~T~~~~~t~nP~Wne~f~f~v~~------~ 62 (1008)
|.|.|++|.||.+. +. .-.-|+||++++. ++..+|+++-++-.|.||.+|+|.+.- .
T Consensus 1 lsv~I~RA~GLqaAA~~la~~~~~l~y~a~VGVN~yv~i~lSFl~~~e~r~TrtVArSFcPeF~Hh~Efpc~lv~~~~~G 80 (143)
T cd08683 1 LSVQIHRASGLQAAARALAEQDPSLQYSATVGVNSYVTIHLSFLPEKELRRTRTVARSFCPEFNHHVEFPCNLVVQRNSG 80 (143)
T ss_pred CeEEeehhhhHHHHHHHHhhhCcccccceecccceEEEEEeccCCCCceeeccchhhhcCCCccceEEEecccEEEcCCC
Confidence 46899999999632 11 1135999999963 567999999999999999999999640 0
Q ss_pred ------CCCCCceEEEEEEeCCCCC---------CCCCeeEEEEEeCcccCCCCCceeEEEec
Q 001830 63 ------HNLSNLALDAYVYNHNRTT---------NSKSFLGKVRLTGTSFVPYSDAVVLHYPL 110 (1008)
Q Consensus 63 ------~~~~~~~l~~~V~d~~~~~---------~~d~~lG~~~i~l~~l~~~~~~~~~~~~L 110 (1008)
+.++...+.|+||+.+.-+ .+|-.||.+.||+.+|.........|||+
T Consensus 81 e~~sLAElLe~~eiil~vwHr~~~s~~~~~~~~~~~DilLG~v~IPl~~Ll~~rsGitGW~pi 143 (143)
T cd08683 81 EAISLAELLESAEIILEVWHRNPKSAGDTIKIETSGDILLGTVKIPLRDLLTKRSGITGWYPI 143 (143)
T ss_pred ccccHHHHhhcceEEeeeeecCCccccceeccCcCCcEEEEEEEeeHHHHhhcccCccccccC
Confidence 1134558999999986432 24567999999999987766655568875
No 243
>PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length.
Probab=97.97 E-value=0.0051 Score=67.07 Aligned_cols=238 Identities=16% Similarity=0.210 Sum_probs=155.1
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECCEEEEeeeccCCCCCCcccceeEEEeeC-------CCCCcEEEEEEecc-C
Q 001830 438 VRVNVMEAQDLVISDKNRFPDAYVKVQIGNQVLKTKSVQSRTLNPVWNEDMMFVASE-------PFEDHLILTVEDRV-G 509 (1008)
Q Consensus 438 L~v~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~kT~~v~~~~~nP~w~e~f~f~v~~-------~~~~~l~i~v~d~d-~ 509 (1008)
+.|.|++|++.+... .-.-.|..+++++...|..+. .+..|.||..+.+.+.. .....|++++|..| .
T Consensus 2 ivl~i~egr~F~~~~---~~~~vv~a~~ng~~l~TDpv~-~~~~p~f~teL~WE~Dr~~l~~~r~~~tPiKl~c~a~~~~ 77 (340)
T PF12416_consen 2 IVLSILEGRNFPQRP---RHPIVVEAKFNGESLETDPVP-HTESPQFNTELAWECDRKALKQHRLQRTPIKLQCFAVDGS 77 (340)
T ss_pred EEEEEecccCCCCCC---CccEEEEEEeCCceeeecCCC-CCCCceeecceeeeccHHHHHHhhccCCceEEEEEEecCC
Confidence 578899999998652 345688999999999999884 89999999999998742 13457999999887 5
Q ss_pred CCCCceeEEEEEeCccc-cccccCCcccceeEEcccCccccccCCCccCCccCcceEEEEeecCCccccCC---------
Q 001830 510 PNKDETIGKVVIPLHSV-EKRADDRIVHTRWFNLEKSVSAALDGDNAKKDKFSSRLHLRVCLDGGYHVLDE--------- 579 (1008)
Q Consensus 510 ~~~d~~lG~~~i~l~~l-~~~~~~~~~~~~w~~L~~~~~~~~~~~~~~~~~~~g~i~l~v~~~~~~~~~~~--------- 579 (1008)
.+..+.+|++.++|... .....+.....+||+|-+.... -.+....+.+.+++.......+.
T Consensus 78 ~~~re~iGyv~LdLRsa~~~~~~~~~~~~~W~~LL~~~~~--------y~~~KPEl~l~l~ie~~~~~~~~~~~~~~~~~ 149 (340)
T PF12416_consen 78 TGKRESIGYVVLDLRSAVVPQEKNQKQKPKWYKLLSSSSK--------YKKHKPELLLSLSIEDDSKPQTPDFESFKAKP 149 (340)
T ss_pred CCcceeccEEEEEccccccccccccccCCCeeEccccccc--------cccCCccEEEEEEEeccccccCCccccccccC
Confidence 67788999999999988 1111233567899999886311 11234566777766543321000
Q ss_pred ccccCC-------CCCc-----c---cccc-------CCCceeEEEEEEEeecCCCCCccCC---CCCCCCeEEEEEECC
Q 001830 580 STHYSS-------DLRP-----T---AKQL-------WKPSIGVLELGILNADGLHPMKTRD---GRGTADTYCVAKYGH 634 (1008)
Q Consensus 580 ~~~~~~-------d~~~-----~---~~~~-------~~~~~g~L~v~v~~a~~L~~~~~~~---~~g~~dpyv~~~~~~ 634 (1008)
.+.... .+.+ . ...+ .....-.|.|++..|+||..+-... ..+...-|....+-+
T Consensus 150 ~p~~~~~~~~~~~~~~~~~l~~~l~~~eg~lQIGp~~~~~d~FvLsvti~~a~nL~~Lip~~l~~~~~~~~f~f~YsllG 229 (340)
T PF12416_consen 150 APPRQGHVPPPNSLLSPATLIPVLLEDEGLLQIGPPDLCCDLFVLSVTIKFAENLEQLIPSSLPEEQNHSGFFFYYSLLG 229 (340)
T ss_pred CCcccCCCcccccccCccceeEEEccCCceEeeCCchhcCceEEEEEehhhhhhHHhhccccccccCCCccEEEEEEecC
Confidence 000000 0000 0 0000 0134567889999999998762111 112345666677766
Q ss_pred EEEEeeeecCCCCccc--ccEEEEEeeCC----------CceEEEEEEeCCCCCCCCCCCCceeEEEEEEccccc
Q 001830 635 KWVRTRTIINSLSAKY--NEQYTWEVYDP----------ATVLTVGVFDNSHIGGSSGSKDVKIGKVRIRISTLE 697 (1008)
Q Consensus 635 ~~~~T~~~~~~~nP~w--ne~f~~~v~~~----------~~~l~i~V~d~~~~~~~~~~~d~~lG~~~i~l~~l~ 697 (1008)
..+.|.......+|.+ ++...+.+... ...|.|.++-. +..||.+.|++..+.
T Consensus 230 n~Vt~~~F~~l~~~~f~~er~s~vRirSS~~~L~~yf~~~~~L~I~Lc~g----------~~~Lg~~~v~l~~Ll 294 (340)
T PF12416_consen 230 NDVTTEPFKSLSSPSFPPERASGVRIRSSLRVLRRYFQQIPKLQIHLCCG----------NQSLGSTSVPLQPLL 294 (340)
T ss_pred cEeEeeeccccCCCCcCeeeeeEEeecccHHHHHHHHhhCCCeEEEEeeC----------CcEEEEEEEEhhhcc
Confidence 6777887777788866 34333655422 24588888874 688999999999873
No 244
>PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length.
Probab=97.93 E-value=0.0018 Score=70.59 Aligned_cols=246 Identities=16% Similarity=0.250 Sum_probs=156.3
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECCeEEEeeeecCCCCCeEeeEEEEEec-------cCCcCeEEEEEEecC--C
Q 001830 274 LFVRVVKARDLPSKDVTGSLDPFVEVKVGNYKGITKYYEKKQNPEWNEVFAFSRE-------RIQSSVLEVAVKDKD--V 344 (1008)
Q Consensus 274 L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~~~~~t~nP~w~e~f~f~~~-------~~~~~~l~i~V~d~d--~ 344 (1008)
+.|.|++|+|.+... .-.-.+..+++++...|..+.++..|.||....+.++ ..+...|++++|-.| .
T Consensus 2 ivl~i~egr~F~~~~---~~~~vv~a~~ng~~l~TDpv~~~~~p~f~teL~WE~Dr~~l~~~r~~~tPiKl~c~a~~~~~ 78 (340)
T PF12416_consen 2 IVLSILEGRNFPQRP---RHPIVVEAKFNGESLETDPVPHTESPQFNTELAWECDRKALKQHRLQRTPIKLQCFAVDGST 78 (340)
T ss_pred EEEEEecccCCCCCC---CccEEEEEEeCCceeeecCCCCCCCceeecceeeeccHHHHHHhhccCCceEEEEEEecCCC
Confidence 678999999998763 2356788999999999999999999999999999863 335678999999988 4
Q ss_pred CCCeeeEEEEEEccccCCCCCCCCCCccEEEEeecCCC--CccceEEEEEEEEeccCCCcCCCc--CCCCCCCCCCC---
Q 001830 345 VKDDYVGLVRFDLNEVPTRVPPDSPLAAEWYRLEDRKG--EKKKGELMLAVWYGTQADEAFPDA--WHSDAVTPTDS--- 417 (1008)
Q Consensus 345 ~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~--~~~~G~i~l~~~~~~~~~~~~~~~--~~~~~~~~~~~--- 417 (1008)
+..+.||.+.++|.........+.....+||+|...++ ...+-+|.+.+............. .......+...
T Consensus 79 ~~re~iGyv~LdLRsa~~~~~~~~~~~~~W~~LL~~~~~y~~~KPEl~l~l~ie~~~~~~~~~~~~~~~~~~p~~~~~~~ 158 (340)
T PF12416_consen 79 GKRESIGYVVLDLRSAVVPQEKNQKQKPKWYKLLSSSSKYKKHKPELLLSLSIEDDSKPQTPDFESFKAKPAPPRQGHVP 158 (340)
T ss_pred CcceeccEEEEEccccccccccccccCCCeeEccccccccccCCccEEEEEEEeccccccCCccccccccCCCcccCCCc
Confidence 67899999999999982111122346789999988733 234567888777654432100000 00000000000
Q ss_pred ----------------CCCcccccccccccCCceeEEEEEEEEeecCCCCCC------CCCCCcEEEEEECCEEEEeeec
Q 001830 418 ----------------PSNVSTHIRSKVYHSPRLWYVRVNVMEAQDLVISDK------NRFPDAYVKVQIGNQVLKTKSV 475 (1008)
Q Consensus 418 ----------------~~~~~~~~~~~~~~~~~~~~L~v~v~~a~~L~~~d~------~g~~dpyv~v~l~~~~~kT~~v 475 (1008)
...+.-.+.+.- .....+.|.|++..|.+|...-. .+....|....+-+....+...
T Consensus 159 ~~~~~~~~~~l~~~l~~~eg~lQIGp~~-~~~d~FvLsvti~~a~nL~~Lip~~l~~~~~~~~f~f~YsllGn~Vt~~~F 237 (340)
T PF12416_consen 159 PPNSLLSPATLIPVLLEDEGLLQIGPPD-LCCDLFVLSVTIKFAENLEQLIPSSLPEEQNHSGFFFYYSLLGNDVTTEPF 237 (340)
T ss_pred ccccccCccceeEEEccCCceEeeCCch-hcCceEEEEEehhhhhhHHhhccccccccCCCccEEEEEEecCcEeEeeec
Confidence 000110111100 02346789999999999976621 1234556666675556666655
Q ss_pred cCCCCCCccc--ceeEEEeeCC---------CCCcEEEEEEeccCCCCCceeEEEEEeCcccccc
Q 001830 476 QSRTLNPVWN--EDMMFVASEP---------FEDHLILTVEDRVGPNKDETIGKVVIPLHSVEKR 529 (1008)
Q Consensus 476 ~~~~~nP~w~--e~f~f~v~~~---------~~~~l~i~v~d~d~~~~d~~lG~~~i~l~~l~~~ 529 (1008)
+...+|.|. +...+.+... ....|.|.++- .+..||.+.+++..+...
T Consensus 238 -~~l~~~~f~~er~s~vRirSS~~~L~~yf~~~~~L~I~Lc~-----g~~~Lg~~~v~l~~Ll~~ 296 (340)
T PF12416_consen 238 -KSLSSPSFPPERASGVRIRSSLRVLRRYFQQIPKLQIHLCC-----GNQSLGSTSVPLQPLLPK 296 (340)
T ss_pred -cccCCCCcCeeeeeEEeecccHHHHHHHHhhCCCeEEEEee-----CCcEEEEEEEEhhhccCC
Confidence 366777664 3222544321 12367777775 367899999999998643
No 245
>KOG3837 consensus Uncharacterized conserved protein, contains DM14 and C2 domains [General function prediction only]
Probab=97.83 E-value=1.4e-05 Score=84.86 Aligned_cols=125 Identities=20% Similarity=0.275 Sum_probs=97.1
Q ss_pred ceEEEEEEEeeCCCCCCCCCCCCcEEEEEEC-----CeeeccccCCCCCCCeeeeEEEEEecCCCC--------CCCceE
Q 001830 4 LKLGVEVVSAYELMPKDGQGSSNAFVELHFD-----GQKFRTTTKEKDLTPVWNESFYFNISDPHN--------LSNLAL 70 (1008)
Q Consensus 4 ~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~-----~~~~~T~~~~~t~nP~Wne~f~f~v~~~~~--------~~~~~l 70 (1008)
..|++.|+++++++...+....|-||.+.+- .++.+|.+++.|.+|.|+|.|.+.+..... +.+..+
T Consensus 367 ~elel~ivrg~~~pvp~gp~hld~fvr~efpl~nD~~qk~kt~vik~t~SPdfde~fklni~rg~~~nr~fqR~fkr~g~ 446 (523)
T KOG3837|consen 367 QELELAIVRGQKNPVPGGPMHLDQFVRLEFPLENDSRQKLKTDVIKVTPSPDFDEDFKLNIRRGPGLNREFQRRFKRLGK 446 (523)
T ss_pred hHhHHHHhhcccCCCCCCchhHHhhhcccccccccccccCccceeeCCCCCCcccceeeeccCCCcccHHHHHHHHhcCe
Confidence 4577888899888765544456889998873 356789999999999999999999864211 234579
Q ss_pred EEEEEeCCCCCCCCCeeEEEEEeCcccCCCCCceeEEEecccCCCCcccceEEEEEEEeec
Q 001830 71 DAYVYNHNRTTNSKSFLGKVRLTGTSFVPYSDAVVLHYPLEKRSIFSRVKGELGLKVFVTD 131 (1008)
Q Consensus 71 ~~~V~d~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~L~~~~~~~~~~G~i~~~~~~~~ 131 (1008)
+|+||++..|.++|.++|.+.+.|.-|....+... .|+|.+. ...+.|.|.+++.+..
T Consensus 447 kfeifhkggf~rSdkl~gt~nikle~Len~cei~e-~~~l~DG--RK~vGGkLevKvRiR~ 504 (523)
T KOG3837|consen 447 KFEIFHKGGFNRSDKLTGTGNIKLEILENMCEICE-YLPLKDG--RKAVGGKLEVKVRIRQ 504 (523)
T ss_pred eEEEeeccccccccceeceeeeeehhhhcccchhh-ceecccc--ccccCCeeEEEEEEec
Confidence 99999999999999999999999888776655433 5777654 3368899999998755
No 246
>cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos
Probab=97.64 E-value=4.4e-05 Score=63.24 Aligned_cols=95 Identities=16% Similarity=0.293 Sum_probs=70.5
Q ss_pred EEEEEEeecCCCCCCC-CCCCcEEEE--EECC-eEEEeeeecCCCCCeEeeEEEEEe--ccCCcCeEEEEEEecCCCCCe
Q 001830 275 FVRVVKARDLPSKDVT-GSLDPFVEV--KVGN-YKGITKYYEKKQNPEWNEVFAFSR--ERIQSSVLEVAVKDKDVVKDD 348 (1008)
Q Consensus 275 ~V~v~~a~~L~~~d~~-g~~dpyv~v--~~~~-~~~kT~~~~~t~nP~w~e~f~f~~--~~~~~~~l~i~V~d~d~~~d~ 348 (1008)
-++|++|++|.....- ..+.-|++= ++.. -..||++.++..||+|+|+|.|.+ ..+..-.|.|.|+. ...+.+
T Consensus 2 witv~~c~d~s~~~~~~e~~~i~ikg~~tl~kpv~~KsS~rrgs~d~~f~ETFVFqi~l~qL~~V~L~fsv~~-~~~RKe 80 (103)
T cd08684 2 WITVLKCKDLSWPSSCGENPTIYIKGILTLPKPVHFKSSAKEGSNDIEFMETFVFAIKLQNLQTVRLVFKIQT-QTPRKR 80 (103)
T ss_pred EEEEEEecccccccccCcCCeeEEEEEEecCCCccccchhhcCCCChhHHHHHHHHHHHhhccceEEEEEeec-cCCccc
Confidence 4789999999765433 334445553 2332 457899999999999999999986 45666789999988 456789
Q ss_pred eeEEEEEEccccCCCCCCCCCCccEEEE
Q 001830 349 YVGLVRFDLNEVPTRVPPDSPLAAEWYR 376 (1008)
Q Consensus 349 ~lG~~~i~l~~l~~~~~~~~~~~~~w~~ 376 (1008)
.||.|++++.++-.. ...+|..
T Consensus 81 ~iG~~sL~l~s~gee------E~~HW~e 102 (103)
T cd08684 81 TIGECSLSLRTLSTQ------ETDHWLE 102 (103)
T ss_pred eeeEEEeecccCCHH------Hhhhhhc
Confidence 999999999998753 3456654
No 247
>cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos
Probab=97.57 E-value=0.0001 Score=61.13 Aligned_cols=95 Identities=16% Similarity=0.346 Sum_probs=68.2
Q ss_pred EEEEEEeecCCCCCC-CCCCCcEEEEEE--C-CEEEEeeeccCCCCCCcccceeEEEeeCC--CCCcEEEEEEeccCCCC
Q 001830 439 RVNVMEAQDLVISDK-NRFPDAYVKVQI--G-NQVLKTKSVQSRTLNPVWNEDMMFVASEP--FEDHLILTVEDRVGPNK 512 (1008)
Q Consensus 439 ~v~v~~a~~L~~~d~-~g~~dpyv~v~l--~-~~~~kT~~v~~~~~nP~w~e~f~f~v~~~--~~~~l~i~v~d~d~~~~ 512 (1008)
-|+++.|+||.-... +..+.-||+-.+ . ....||+ +++...||.|+|+|.|.+... ....|.++|+. ...+
T Consensus 2 witv~~c~d~s~~~~~~e~~~i~ikg~~tl~kpv~~KsS-~rrgs~d~~f~ETFVFqi~l~qL~~V~L~fsv~~--~~~R 78 (103)
T cd08684 2 WITVLKCKDLSWPSSCGENPTIYIKGILTLPKPVHFKSS-AKEGSNDIEFMETFVFAIKLQNLQTVRLVFKIQT--QTPR 78 (103)
T ss_pred EEEEEEecccccccccCcCCeeEEEEEEecCCCccccch-hhcCCCChhHHHHHHHHHHHhhccceEEEEEeec--cCCc
Confidence 478899999975443 334455776555 2 3456666 456899999999999987543 44578888887 4678
Q ss_pred CceeEEEEEeCccccccccCCcccceeEE
Q 001830 513 DETIGKVVIPLHSVEKRADDRIVHTRWFN 541 (1008)
Q Consensus 513 d~~lG~~~i~l~~l~~~~~~~~~~~~w~~ 541 (1008)
.+.||.|.++++++-.++ ..+|..
T Consensus 79 Ke~iG~~sL~l~s~geeE-----~~HW~e 102 (103)
T cd08684 79 KRTIGECSLSLRTLSTQE-----TDHWLE 102 (103)
T ss_pred cceeeEEEeecccCCHHH-----hhhhhc
Confidence 899999999999886543 456654
No 248
>KOG2060 consensus Rab3 effector RIM1 and related proteins, contain PDZ and C2 domains [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.42 E-value=0.00011 Score=77.91 Aligned_cols=107 Identities=22% Similarity=0.310 Sum_probs=86.6
Q ss_pred CceEEEEEEEeeCCCCCCCCC-CCCcEEEEEECCe-----eeccccCCCCCCCeeeeEEEEEecCCCCCCCceEEEEEEe
Q 001830 3 HLKLGVEVVSAYELMPKDGQG-SSNAFVELHFDGQ-----KFRTTTKEKDLTPVWNESFYFNISDPHNLSNLALDAYVYN 76 (1008)
Q Consensus 3 ~~~L~V~v~~a~~L~~~d~~g-~~dPyv~v~~~~~-----~~~T~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~~~V~d 76 (1008)
.+.|.|.|+.|++|..+...+ .++|||+|++... +.+|+...+|++|-+-+...|.- ..+...|.+.||.
T Consensus 268 ~g~l~vEii~ar~l~~k~~~k~~~apyVkVYlL~~g~c~ak~ktk~A~kT~~plyqq~l~f~~----sp~~k~Lq~tv~g 343 (405)
T KOG2060|consen 268 KGDLEVEIIRARGLVVKPGSKSLPAPYVKVYLLENGFCIAKKKTKSARKTLDPLYQQQLSFDQ----SPPGKYLQGTVWG 343 (405)
T ss_pred cCceeEEEEecccccccCCcccccCceeEEEEcCCCceecccccccccccCchhhhhhhhhcc----CCCccEEEEEEec
Confidence 368999999999999876543 6899999998532 58999999999998888888874 3455699999998
Q ss_pred CCCCCCCCCeeEEEEEeCcccCCCCCceeEEEecccC
Q 001830 77 HNRTTNSKSFLGKVRLTGTSFVPYSDAVVLHYPLEKR 113 (1008)
Q Consensus 77 ~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~L~~~ 113 (1008)
.=....++.|+|.+.|-+.+|.........||+|-..
T Consensus 344 dygRmd~k~fmg~aqi~l~eL~ls~~~~igwyKlfgs 380 (405)
T KOG2060|consen 344 DYGRMDHKSFMGVAQIMLDELNLSSSPVIGWYKLFGS 380 (405)
T ss_pred cccccchHHHhhHHHHHhhhhccccccceeeeeccCC
Confidence 6444456799999999999987776667779999765
No 249
>PLN02964 phosphatidylserine decarboxylase
Probab=97.31 E-value=0.0003 Score=82.72 Aligned_cols=86 Identities=20% Similarity=0.283 Sum_probs=73.4
Q ss_pred eeEEEEEEEEeecCCCCCCCCCCCcE-EEEEECCeEEEeeeecCCCCCeEeeEEEEEeccCCcCeEEEEEEecC-CCCCe
Q 001830 271 MRYLFVRVVKARDLPSKDVTGSLDPF-VEVKVGNYKGITKYYEKKQNPEWNEVFAFSRERIQSSVLEVAVKDKD-VVKDD 348 (1008)
Q Consensus 271 ~~~L~V~v~~a~~L~~~d~~g~~dpy-v~v~~~~~~~kT~~~~~t~nP~w~e~f~f~~~~~~~~~l~i~V~d~d-~~~d~ 348 (1008)
.|...+++++|+ ++. .|+| +.+++|.+.+||.+.++|.||+||+...|.+........+|.|||.+ +..++
T Consensus 53 ~~~~~~~~~~~~----~~~---~~~~~~~~~~g~~~f~t~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~n~ 125 (644)
T PLN02964 53 SGIALLTLVGAE----MKF---KDKWLACVSFGEQTFRTETSDSTDKPVWNSEKKLLLEKNGPHLARISVFETNRLSKNT 125 (644)
T ss_pred cCeEEEEeehhh----hcc---CCcEEEEEEecceeeeeccccccCCcccchhhceEeccCCcceEEEEEEecCCCCHHH
Confidence 478999999987 433 4776 56778889999999999999999999999987766677899999999 78899
Q ss_pred eeEEEEEEccccCCC
Q 001830 349 YVGLVRFDLNEVPTR 363 (1008)
Q Consensus 349 ~lG~~~i~l~~l~~~ 363 (1008)
++|.|.++|.++...
T Consensus 126 lv~~~e~~~t~f~~k 140 (644)
T PLN02964 126 LVGYCELDLFDFVTQ 140 (644)
T ss_pred hhhheeecHhhccHH
Confidence 999999999887754
No 250
>PLN02964 phosphatidylserine decarboxylase
Probab=97.27 E-value=0.00039 Score=81.83 Aligned_cols=88 Identities=18% Similarity=0.303 Sum_probs=73.5
Q ss_pred ceeEEEEEEEeecCCCCCccCCCCCCCCeEEE-EEECCEEEEeeeecCCCCcccccEEEEEeeCC-CceEEEEEEeCCCC
Q 001830 598 SIGVLELGILNADGLHPMKTRDGRGTADTYCV-AKYGHKWVRTRTIINSLSAKYNEQYTWEVYDP-ATVLTVGVFDNSHI 675 (1008)
Q Consensus 598 ~~g~L~v~v~~a~~L~~~~~~~~~g~~dpyv~-~~~~~~~~~T~~~~~~~nP~wne~f~~~v~~~-~~~l~i~V~d~~~~ 675 (1008)
-.|...+++++|+ |+ ..|+|+. +.+|.+.+||.+.++|+||+||+...|.|..- -...++.|||++.+
T Consensus 52 ~~~~~~~~~~~~~----~~------~~~~~~~~~~~g~~~f~t~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (644)
T PLN02964 52 FSGIALLTLVGAE----MK------FKDKWLACVSFGEQTFRTETSDSTDKPVWNSEKKLLLEKNGPHLARISVFETNRL 121 (644)
T ss_pred ccCeEEEEeehhh----hc------cCCcEEEEEEecceeeeeccccccCCcccchhhceEeccCCcceEEEEEEecCCC
Confidence 4588999999997 32 2488876 67899999999999999999999999988753 22469999999988
Q ss_pred CCCCCCCCceeEEEEEEcccccCCC
Q 001830 676 GGSSGSKDVKIGKVRIRISTLETGR 700 (1008)
Q Consensus 676 ~~~~~~~d~~lG~~~i~l~~l~~~~ 700 (1008)
. +++.+|.++++|.++...+
T Consensus 122 s-----~n~lv~~~e~~~t~f~~kq 141 (644)
T PLN02964 122 S-----KNTLVGYCELDLFDFVTQE 141 (644)
T ss_pred C-----HHHhhhheeecHhhccHHH
Confidence 7 9999999999998885554
No 251
>KOG2060 consensus Rab3 effector RIM1 and related proteins, contain PDZ and C2 domains [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.80 E-value=0.00079 Score=71.50 Aligned_cols=111 Identities=23% Similarity=0.323 Sum_probs=88.3
Q ss_pred CcCceeEEEEEEEEeecCCCCCC-CCCCCcEEEEEECC-----eEEEeeeecCCCCCeEeeEEEEEeccCCcCeEEEEEE
Q 001830 267 LVEQMRYLFVRVVKARDLPSKDV-TGSLDPFVEVKVGN-----YKGITKYYEKKQNPEWNEVFAFSRERIQSSVLEVAVK 340 (1008)
Q Consensus 267 ~~~~~~~L~V~v~~a~~L~~~d~-~g~~dpyv~v~~~~-----~~~kT~~~~~t~nP~w~e~f~f~~~~~~~~~l~i~V~ 340 (1008)
+....|.|.|.|++|++|..+.. ...++|||+|++.. .+.+|+...+|..|.|-+...|.-... ...|.++||
T Consensus 264 ~~d~~g~l~vEii~ar~l~~k~~~k~~~apyVkVYlL~~g~c~ak~ktk~A~kT~~plyqq~l~f~~sp~-~k~Lq~tv~ 342 (405)
T KOG2060|consen 264 LMDSKGDLEVEIIRARGLVVKPGSKSLPAPYVKVYLLENGFCIAKKKTKSARKTLDPLYQQQLSFDQSPP-GKYLQGTVW 342 (405)
T ss_pred hhcccCceeEEEEecccccccCCcccccCceeEEEEcCCCceecccccccccccCchhhhhhhhhccCCC-ccEEEEEEe
Confidence 34567899999999999977543 33789999999975 256899999999999998888875554 579999999
Q ss_pred ecC--CCCCeeeEEEEEEccccCCCCCCCCCCccEEEEeecCCC
Q 001830 341 DKD--VVKDDYVGLVRFDLNEVPTRVPPDSPLAAEWYRLEDRKG 382 (1008)
Q Consensus 341 d~d--~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~ 382 (1008)
-.- +..+.|+|.+.+-+.+|... ......||+|-....
T Consensus 343 gdygRmd~k~fmg~aqi~l~eL~ls----~~~~igwyKlfgsss 382 (405)
T KOG2060|consen 343 GDYGRMDHKSFMGVAQIMLDELNLS----SSPVIGWYKLFGSSS 382 (405)
T ss_pred ccccccchHHHhhHHHHHhhhhccc----cccceeeeeccCCcc
Confidence 753 56789999999999999875 245678999976543
No 252
>KOG3837 consensus Uncharacterized conserved protein, contains DM14 and C2 domains [General function prediction only]
Probab=96.77 E-value=0.0012 Score=70.54 Aligned_cols=120 Identities=20% Similarity=0.274 Sum_probs=92.3
Q ss_pred eeEEEEEEEeecCCCCCccCCCCCCCCeEEEEEE---C--CEEEEeeeecCCCCcccccEEEEEeeC-C--C--------
Q 001830 599 IGVLELGILNADGLHPMKTRDGRGTADTYCVAKY---G--HKWVRTRTIINSLSAKYNEQYTWEVYD-P--A-------- 662 (1008)
Q Consensus 599 ~g~L~v~v~~a~~L~~~~~~~~~g~~dpyv~~~~---~--~~~~~T~~~~~~~nP~wne~f~~~v~~-~--~-------- 662 (1008)
.-.|++.|.++++++.. .+....|-|+++++ + .+..+|.+++.|.+|.|+|.|.++|.. + +
T Consensus 366 d~elel~ivrg~~~pvp---~gp~hld~fvr~efpl~nD~~qk~kt~vik~t~SPdfde~fklni~rg~~~nr~fqR~fk 442 (523)
T KOG3837|consen 366 DQELELAIVRGQKNPVP---GGPMHLDQFVRLEFPLENDSRQKLKTDVIKVTPSPDFDEDFKLNIRRGPGLNREFQRRFK 442 (523)
T ss_pred hhHhHHHHhhcccCCCC---CCchhHHhhhcccccccccccccCccceeeCCCCCCcccceeeeccCCCcccHHHHHHHH
Confidence 34677888889888742 22334588998876 2 245689999999999999999999975 2 1
Q ss_pred -ceEEEEEEeCCCCCCCCCCCCceeEEEEEEcccccCCCeEEeeEeeeecCCCCCcc-ccEEEEEEEEE
Q 001830 663 -TVLTVGVFDNSHIGGSSGSKDVKIGKVRIRISTLETGRVYTHSYPLLVLHPSGVKK-MGELHLAIRFS 729 (1008)
Q Consensus 663 -~~l~i~V~d~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~-~G~i~l~~~f~ 729 (1008)
.-+.|++|....|. ..|.++|.+.|.|..|++.-.+...|+|++ |.+. .|.|.+.+++.
T Consensus 443 r~g~kfeifhkggf~----rSdkl~gt~nikle~Len~cei~e~~~l~D----GRK~vGGkLevKvRiR 503 (523)
T KOG3837|consen 443 RLGKKFEIFHKGGFN----RSDKLTGTGNIKLEILENMCEICEYLPLKD----GRKAVGGKLEVKVRIR 503 (523)
T ss_pred hcCeeEEEeeccccc----cccceeceeeeeehhhhcccchhhceeccc----cccccCCeeEEEEEEe
Confidence 13899999987654 589999999999999998888888999973 3332 58888888864
No 253
>PF15627 CEP76-C2: CEP76 C2 domain
Probab=95.95 E-value=0.062 Score=51.31 Aligned_cols=128 Identities=17% Similarity=0.216 Sum_probs=88.2
Q ss_pred CceEEEEEEEeeCCCCCCCC--CCCC--cEEEEEECCeeeccccCCCCCCCeeeeEEEEEecCCCC-----C-----CCc
Q 001830 3 HLKLGVEVVSAYELMPKDGQ--GSSN--AFVELHFDGQKFRTTTKEKDLTPVWNESFYFNISDPHN-----L-----SNL 68 (1008)
Q Consensus 3 ~~~L~V~v~~a~~L~~~d~~--g~~d--Pyv~v~~~~~~~~T~~~~~t~nP~Wne~f~f~v~~~~~-----~-----~~~ 68 (1008)
.+.|+|+|.+++-...-... |..+ =++-+.+++|+++|+.+.-+.+|.++|.|.|++..... . ...
T Consensus 8 ~~yL~l~vlgGkAFld~l~~~~~~~~s~~~l~l~f~~QRF~S~~Vp~~~eP~f~e~Flf~l~~~~~~~~~~~~~lls~~~ 87 (156)
T PF15627_consen 8 RRYLHLRVLGGKAFLDHLQEPEGQVCSTFTLHLHFRGQRFRSKPVPCACEPDFNEEFLFELPRDSFGAGSTATTLLSISD 87 (156)
T ss_pred ceEEEEEEeCchhHhhhhhccCCCCceEEEEEEEecCceEecCCcccccCCCCCCcEEEEecccccccccchhHhhcCCC
Confidence 46799999999876532211 3333 34446678999999999999999999999999865320 0 124
Q ss_pred eEEEEEEeCCCCCCCCCeeEEEEEeCcccCCCCCce-eEEEecccCCCCcc-cceEEEEEEEeec
Q 001830 69 ALDAYVYNHNRTTNSKSFLGKVRLTGTSFVPYSDAV-VLHYPLEKRSIFSR-VKGELGLKVFVTD 131 (1008)
Q Consensus 69 ~l~~~V~d~~~~~~~d~~lG~~~i~l~~l~~~~~~~-~~~~~L~~~~~~~~-~~G~i~~~~~~~~ 131 (1008)
.|++.|.--|..+ ...++|...+.+..+...+... .....|...+..++ ..|-|.+++.+.+
T Consensus 88 pihivli~~d~~~-~~~Lv~s~~ldWR~vL~s~~~~~~~~vEL~G~~~e~kv~~GiL~l~lELlP 151 (156)
T PF15627_consen 88 PIHIVLIRTDPSG-ETTLVGSHFLDWRKVLCSGNGSTSFTVELCGVGPESKVPVGILDLRLELLP 151 (156)
T ss_pred ceEEEEEEecCCC-ceEeeeeceehHHHHhccCCCccceeEEEeccCCCCccceeEEEEEEEeec
Confidence 6888888877665 3489999999999876665532 11233433333222 5699999998766
No 254
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=95.80 E-value=0.04 Score=64.80 Aligned_cols=109 Identities=27% Similarity=0.368 Sum_probs=74.2
Q ss_pred ceEEEEEEEeeCCCCCCCCCCCCcEEEEEECC-------eeeccccCC-CCCCCeee-eEEEEE-ecCCCCCCCceEEEE
Q 001830 4 LKLGVEVVSAYELMPKDGQGSSNAFVELHFDG-------QKFRTTTKE-KDLTPVWN-ESFYFN-ISDPHNLSNLALDAY 73 (1008)
Q Consensus 4 ~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~-------~~~~T~~~~-~t~nP~Wn-e~f~f~-v~~~~~~~~~~l~~~ 73 (1008)
+.+.|+|++|+=|..++ ...||.|.+-| ..++|+++. ++.||+|| |.|.|. |.-+ ++ ..|+|.
T Consensus 703 ~t~sV~VISgqFLSdrk----vgtyVEVdmfgLP~Dt~Rk~~rtrt~~~n~~npvy~eepfvF~KVvLp-eL--A~lRia 775 (1189)
T KOG1265|consen 703 ATLSVTVISGQFLSDRK----VGTYVEVDMFGLPTDTIRKEFRTRTVQGNSFNPVYEEEPFVFRKVVLP-EL--ASLRIA 775 (1189)
T ss_pred eeEEEEEEeeeeccccc----cCceEEEEecCCCchhhhhhhhhccccCCCCCcccccCCcccceeccc-ch--hheeee
Confidence 57899999999998766 44899999843 347888765 68899998 568887 3222 22 379999
Q ss_pred EEeCCCCCCCCCeeEEEEEeCcccCCCCCceeEEEecccCCCCcccceEEEEEEE
Q 001830 74 VYNHNRTTNSKSFLGKVRLTGTSFVPYSDAVVLHYPLEKRSIFSRVKGELGLKVF 128 (1008)
Q Consensus 74 V~d~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~L~~~~~~~~~~G~i~~~~~ 128 (1008)
||+. ...|||+=.+|+..+..- .....|+..+...-.--.|.+.+.
T Consensus 776 vyeE-----ggK~ig~RIlpvd~l~~G----Yrhv~LRse~Nqpl~lp~Lfv~i~ 821 (1189)
T KOG1265|consen 776 VYEE-----GGKFIGQRILPVDGLNAG----YRHVCLRSESNQPLTLPALFVYIV 821 (1189)
T ss_pred eecc-----CCceeeeeccchhcccCc----ceeEEecCCCCCccccceeEEEEE
Confidence 9997 357999999998776432 124556655432222234444443
No 255
>cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c
Probab=95.78 E-value=0.052 Score=52.75 Aligned_cols=106 Identities=16% Similarity=0.216 Sum_probs=71.9
Q ss_pred ceEEEEEEEeeCCCCCCCCCCCCcEEEEEE--CCee----eccccCCCCCCCeeeeEEEEEecCCCCCCCceEEEEEEeC
Q 001830 4 LKLGVEVVSAYELMPKDGQGSSNAFVELHF--DGQK----FRTTTKEKDLTPVWNESFYFNISDPHNLSNLALDAYVYNH 77 (1008)
Q Consensus 4 ~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~--~~~~----~~T~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~~~V~d~ 77 (1008)
..++|+|+++.++...+ .+|-||.+.+ +++. ..|+.+. ..++.|||...|++.-.+-..+..|.|.||+.
T Consensus 8 ~~~~v~i~~~~~~~~~~---~~~l~V~v~l~~g~~~L~~pv~T~~v~-~~~~~WnEwL~fpI~i~dLPr~ArL~iti~~~ 83 (158)
T cd08398 8 SNLRIKILCATYVNVND---IDKIYVRTGIYHGGEPLCDNVNTQRVP-CSNPRWNEWLDYDIYIPDLPRSARLCLSICSV 83 (158)
T ss_pred CCeEEEEEeeccCCCCC---cCeEEEEEEEEECCEEccCeeEecccC-CCCCccceeEEcccchhcCChhheEEEEEEEE
Confidence 57899999999998654 4688888754 5542 3454334 36799999999997654444567899999997
Q ss_pred CCCCC---CCCeeEEEEEeCcccCCCCCceeEEEecccCCCCcccceEEEEEEEee
Q 001830 78 NRTTN---SKSFLGKVRLTGTSFVPYSDAVVLHYPLEKRSIFSRVKGELGLKVFVT 130 (1008)
Q Consensus 78 ~~~~~---~d~~lG~~~i~l~~l~~~~~~~~~~~~L~~~~~~~~~~G~i~~~~~~~ 130 (1008)
..... ....||.+.++|-+- ++ . -.+|...+.++-.
T Consensus 84 ~~~~~~k~~~~~iG~~ni~LFd~--~~-------~--------Lr~G~~~L~lW~~ 122 (158)
T cd08398 84 KGRKGAKEEHCPLAWGNINLFDY--TD-------T--------LVSGKMALNLWPV 122 (158)
T ss_pred ecccCCCCceEEEEEEEEEEECC--CC-------h--------hhCCCEEEEEEcC
Confidence 54211 124689999885441 11 1 1358888888753
No 256
>cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty
Probab=95.31 E-value=0.099 Score=51.85 Aligned_cols=91 Identities=16% Similarity=0.199 Sum_probs=62.8
Q ss_pred ceEEEEEEEeeCCCCCCCCCCCCcEEEEE--ECCee----eccccCCCCCCCeeeeEEEEEecCCCCCCCceEEEEEEeC
Q 001830 4 LKLGVEVVSAYELMPKDGQGSSNAFVELH--FDGQK----FRTTTKEKDLTPVWNESFYFNISDPHNLSNLALDAYVYNH 77 (1008)
Q Consensus 4 ~~L~V~v~~a~~L~~~d~~g~~dPyv~v~--~~~~~----~~T~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~~~V~d~ 77 (1008)
..++|+|+++.+|..++ ...+-||.+. .|++. ..|+.+.-..++.|||.+.|++.-.+-..+..|.|.||+.
T Consensus 8 ~~f~i~i~~~~~~~~~~--~~~~l~V~~~lyhG~~~L~~p~~T~~~~~~~~~~Wnewl~F~I~i~dLPr~ArLciti~~~ 85 (173)
T cd08693 8 EKFSITLHKISNLNAAE--RTMKVGVQAGLFHGGESLCKTVKTSEVSGKNDPVWNETLEFDINVCDLPRMARLCFAIYEV 85 (173)
T ss_pred CCEEEEEEEeccCccCC--CCceEEEEEEEEECCEEccCceEccccCCCCccccceeEEcccchhcCChhHeEEEEEEEe
Confidence 57899999999998622 3466777754 45543 4666555557799999999987544444566899999997
Q ss_pred CCCC---------------CCCCeeEEEEEeCcc
Q 001830 78 NRTT---------------NSKSFLGKVRLTGTS 96 (1008)
Q Consensus 78 ~~~~---------------~~d~~lG~~~i~l~~ 96 (1008)
.... ..+..||.+.++|-+
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~ig~~n~~LFd 119 (173)
T cd08693 86 SKKAKGKRSRKNQTKKKKKKDDNPIAWVNTMVFD 119 (173)
T ss_pred cccccccccccccccccccCcceEEEEEeEEEEc
Confidence 5321 123577888777533
No 257
>PF15627 CEP76-C2: CEP76 C2 domain
Probab=95.30 E-value=0.26 Score=47.15 Aligned_cols=125 Identities=12% Similarity=0.196 Sum_probs=84.1
Q ss_pred eeEEEEEEEeecCCCCCccCCCCCCCCeEE--EEEECCEEEEeeeecCCCCcccccEEEEEeeCC--------------C
Q 001830 599 IGVLELGILNADGLHPMKTRDGRGTADTYC--VAKYGHKWVRTRTIINSLSAKYNEQYTWEVYDP--------------A 662 (1008)
Q Consensus 599 ~g~L~v~v~~a~~L~~~~~~~~~g~~dpyv--~~~~~~~~~~T~~~~~~~nP~wne~f~~~v~~~--------------~ 662 (1008)
.-.|.++|..++-.---- .+..|..+..+ -+.+++++++|+.+.-+.+|.|+|.|-|++... +
T Consensus 8 ~~yL~l~vlgGkAFld~l-~~~~~~~~s~~~l~l~f~~QRF~S~~Vp~~~eP~f~e~Flf~l~~~~~~~~~~~~~lls~~ 86 (156)
T PF15627_consen 8 RRYLHLRVLGGKAFLDHL-QEPEGQVCSTFTLHLHFRGQRFRSKPVPCACEPDFNEEFLFELPRDSFGAGSTATTLLSIS 86 (156)
T ss_pred ceEEEEEEeCchhHhhhh-hccCCCCceEEEEEEEecCceEecCCcccccCCCCCCcEEEEecccccccccchhHhhcCC
Confidence 356777887777433100 00013334444 456799999999999999999999999988632 3
Q ss_pred ceEEEEEEeCCCCCCCCCCCCceeEEEEEEcccccCCCe--EEeeEeeeecCCCCCccccEEEEEEEEE
Q 001830 663 TVLTVGVFDNSHIGGSSGSKDVKIGKVRIRISTLETGRV--YTHSYPLLVLHPSGVKKMGELHLAIRFS 729 (1008)
Q Consensus 663 ~~l~i~V~d~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~--~~~~~~L~~~~~~~~~~~G~i~l~~~f~ 729 (1008)
+.|.+.|.-.|..+ ...++|.-.+....+-.... ......|........-..|.|++++.+-
T Consensus 87 ~pihivli~~d~~~-----~~~Lv~s~~ldWR~vL~s~~~~~~~~vEL~G~~~e~kv~~GiL~l~lELl 150 (156)
T PF15627_consen 87 DPIHIVLIRTDPSG-----ETTLVGSHFLDWRKVLCSGNGSTSFTVELCGVGPESKVPVGILDLRLELL 150 (156)
T ss_pred CceEEEEEEecCCC-----ceEeeeeceehHHHHhccCCCccceeEEEeccCCCCccceeEEEEEEEee
Confidence 56999999888654 55999999999988643322 2345566544443222469999988763
No 258
>PF08372 PRT_C: Plant phosphoribosyltransferase C-terminal; InterPro: IPR013583 This domain is found at the C terminus of phosphoribosyltransferases and phosphoribosyltransferase-like proteins. It contains putative transmembrane regions. It often appears together with calcium-ion dependent C2 domains (IPR000008 from INTERPRO).
Probab=95.22 E-value=0.092 Score=50.25 Aligned_cols=59 Identities=19% Similarity=0.331 Sum_probs=45.7
Q ss_pred hhhHHHHHHHHHHHhHHHHHHHHhhccccccCchhHHHHHHHHHHHHHhcchhHHHHHHH
Q 001830 800 RRSKANFFRLMSVFSGLFAAGKWFGEVCMWRNPITTVLVHILFVMLVYFPELILPTVFLY 859 (1008)
Q Consensus 800 ~~~~~n~~rl~~~~~~~~~~~~~i~~l~~W~~p~~t~~~~~~~~~~~~~~~l~lp~~~l~ 859 (1008)
++++.=..|++.++.-+-..+..++.+++|++|..|.++.+++++++.- .+++|+-.++
T Consensus 62 drlr~va~rvQ~vlgd~At~gERl~allsWrdP~aT~lf~~~clv~avv-ly~vP~r~l~ 120 (156)
T PF08372_consen 62 DRLRSVAGRVQNVLGDVATQGERLQALLSWRDPRATALFVVFCLVAAVV-LYFVPFRVLV 120 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccHHHHHHHHHHHHHHH-HHHhhHHHHH
Confidence 4566667777788888889999999999999999999998877776544 3356655443
No 259
>KOG1452 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms]
Probab=95.02 E-value=0.054 Score=56.13 Aligned_cols=115 Identities=20% Similarity=0.171 Sum_probs=78.1
Q ss_pred CceEEEEEEEeeCCCCCCC--CCCCCcEEEEEECCe-eeccccCCCCCCCeeeeEEEEEecCCCCCCCceEEEEEEeCCC
Q 001830 3 HLKLGVEVVSAYELMPKDG--QGSSNAFVELHFDGQ-KFRTTTKEKDLTPVWNESFYFNISDPHNLSNLALDAYVYNHNR 79 (1008)
Q Consensus 3 ~~~L~V~v~~a~~L~~~d~--~g~~dPyv~v~~~~~-~~~T~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~~~V~d~~~ 79 (1008)
++.|.+++..++||.-... +-+-+-||++.++.+ +.+|.+.....-=.|.|+|..++.+.+ .+.+-||.|+.
T Consensus 50 tGiL~~H~~~GRGLr~~p~~kglt~~~ycVle~drqh~aRt~vrs~~~~f~w~e~F~~Dvv~~~-----vl~~lvySW~p 124 (442)
T KOG1452|consen 50 TGILYFHAYNGRGLRMTPQQKGLTVCFYCVLEPDRQHPARTRVRSSGPGFAWAEDFKHDVVNIE-----VLHYLVYSWPP 124 (442)
T ss_pred cceEEEEEecccccccChhccCceeeeeeeeeecccCccccccccCCCCccchhhceeecccce-----eeeEEEeecCc
Confidence 5789999999999974433 447799999999976 477877777777789999999986543 68999999865
Q ss_pred CCCC-CCeeEEEEEeCcccCCCCCceeEEEecccCCCCcccceEEEEEEEeec
Q 001830 80 TTNS-KSFLGKVRLTGTSFVPYSDAVVLHYPLEKRSIFSRVKGELGLKVFVTD 131 (1008)
Q Consensus 80 ~~~~-d~~lG~~~i~l~~l~~~~~~~~~~~~L~~~~~~~~~~G~i~~~~~~~~ 131 (1008)
-.++ =..+| .+.+..+...+.....-..|+. +|.+.+++.+.+
T Consensus 125 q~RHKLC~~g--~l~~~~v~rqspd~~~Al~leP-------rgq~~~r~~~~D 168 (442)
T KOG1452|consen 125 QRRHKLCHLG--LLEAFVVDRQSPDRVVALYLEP-------RGQPPLRLPLAD 168 (442)
T ss_pred hhhccccccc--hhhhhhhhhcCCcceeeeeccc-------CCCCceecccCC
Confidence 5322 13355 3333334443333322344554 478888876654
No 260
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=94.96 E-value=0.11 Score=61.18 Aligned_cols=112 Identities=21% Similarity=0.280 Sum_probs=79.5
Q ss_pred CceeEEEEEEEeecCCCCCccCCCCCCCCeEEEEEECC-------EEEEeeeecC-CCCccccc-EEEEE-eeCC-CceE
Q 001830 597 PSIGVLELGILNADGLHPMKTRDGRGTADTYCVAKYGH-------KWVRTRTIIN-SLSAKYNE-QYTWE-VYDP-ATVL 665 (1008)
Q Consensus 597 ~~~g~L~v~v~~a~~L~~~~~~~~~g~~dpyv~~~~~~-------~~~~T~~~~~-~~nP~wne-~f~~~-v~~~-~~~l 665 (1008)
...+.+.|+|++++=|..++ .-.||.|.+-+ +.+||+++.. +.||+|+| .|.|. |..| -..|
T Consensus 700 vIA~t~sV~VISgqFLSdrk-------vgtyVEVdmfgLP~Dt~Rk~~rtrt~~~n~~npvy~eepfvF~KVvLpeLA~l 772 (1189)
T KOG1265|consen 700 VIAATLSVTVISGQFLSDRK-------VGTYVEVDMFGLPTDTIRKEFRTRTVQGNSFNPVYEEEPFVFRKVVLPELASL 772 (1189)
T ss_pred eEEeeEEEEEEeeeeccccc-------cCceEEEEecCCCchhhhhhhhhccccCCCCCcccccCCcccceecccchhhe
Confidence 45689999999999888432 34899998733 3468999875 58999986 57774 3344 4689
Q ss_pred EEEEEeCCCCCCCCCCCCceeEEEEEEcccccCCCeEEeeEeeeecCCCCCccccEEEEEEEE
Q 001830 666 TVGVFDNSHIGGSSGSKDVKIGKVRIRISTLETGRVYTHSYPLLVLHPSGVKKMGELHLAIRF 728 (1008)
Q Consensus 666 ~i~V~d~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~G~i~l~~~f 728 (1008)
+|.||++ ...+||+-.+|+..|..|- +..-|.+....-.. .-.|.+.+.+
T Consensus 773 RiavyeE---------ggK~ig~RIlpvd~l~~GY---rhv~LRse~Nqpl~-lp~Lfv~i~~ 822 (1189)
T KOG1265|consen 773 RIAVYEE---------GGKFIGQRILPVDGLNAGY---RHVCLRSESNQPLT-LPALFVYIVL 822 (1189)
T ss_pred eeeeecc---------CCceeeeeccchhcccCcc---eeEEecCCCCCccc-cceeEEEEEe
Confidence 9999998 4799999999999999885 45556543332221 2455554443
No 261
>cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks). C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=94.64 E-value=0.18 Score=49.33 Aligned_cols=92 Identities=16% Similarity=0.196 Sum_probs=62.8
Q ss_pred ceEEEEEEEeeCCCCCCCCCCCCcEEEEEE--CCee----eccccCCCCCCCeeeeEEEEEecCCCCCCCceEEEEEEeC
Q 001830 4 LKLGVEVVSAYELMPKDGQGSSNAFVELHF--DGQK----FRTTTKEKDLTPVWNESFYFNISDPHNLSNLALDAYVYNH 77 (1008)
Q Consensus 4 ~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~--~~~~----~~T~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~~~V~d~ 77 (1008)
..++|+|++..++...+ ....+-||.+.+ +++. ..|.......++.|||...|++.-.+-..+..|.|.||+.
T Consensus 8 ~~~~i~i~~~~~~~~~~-~~~~~l~V~~~l~~g~~~l~~~~~t~~~~~~~~~~Wne~l~F~i~~~~LP~~arL~itl~~~ 86 (156)
T cd08380 8 FNLRIKIHGITNINLLD-SEDLKLYVRVQLYHGGEPLCPPQSTKKVPFSTSVTWNEWLTFDILISDLPREARLCLSIYAV 86 (156)
T ss_pred CCeEEEEEeeccccccC-CCceeEEEEEEEEECCEEccCceeccCCcCCCCCcccceeEccchhhcCChhheEEEEEEEE
Confidence 57889999999887622 224566776644 5542 3444444447899999999996544444566899999998
Q ss_pred CCCC-CCCCeeEEEEEeCcc
Q 001830 78 NRTT-NSKSFLGKVRLTGTS 96 (1008)
Q Consensus 78 ~~~~-~~d~~lG~~~i~l~~ 96 (1008)
+... ..+..||.+.++|-+
T Consensus 87 ~~~~~~~~~~iG~~~~~lFd 106 (156)
T cd08380 87 SEPGSKKEVPLGWVNVPLFD 106 (156)
T ss_pred ecCCCCcceEEEEEeEEeEc
Confidence 5443 145789999999644
No 262
>PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen []. Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1).
Probab=94.58 E-value=0.93 Score=43.52 Aligned_cols=120 Identities=17% Similarity=0.314 Sum_probs=78.9
Q ss_pred ceEEEEEEEeeCCCCCCCCCCCCcEEEEEECCee---eccccCC-CCCCCeeeeEEEEEec-----CCCCCCCceEEEEE
Q 001830 4 LKLGVEVVSAYELMPKDGQGSSNAFVELHFDGQK---FRTTTKE-KDLTPVWNESFYFNIS-----DPHNLSNLALDAYV 74 (1008)
Q Consensus 4 ~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~~---~~T~~~~-~t~nP~Wne~f~f~v~-----~~~~~~~~~l~~~V 74 (1008)
..+.|+|+...+++. ....-||....++.. .+|.... ..-.-.|||.|.+.++ ....++...+.|.|
T Consensus 7 f~~~l~i~~l~~~p~----~~~~v~v~wkr~~~~~~~~~t~~~~~~~~~v~w~e~~~~~~tl~~~~k~~~~~~K~~~~~v 82 (143)
T PF10358_consen 7 FQFDLTIHELENLPS----SNGKVFVKWKRGDKSKGSGTTSRANVKNGKVQWNEEFSFPCTLYRDKKSKEFQPKELKFSV 82 (143)
T ss_pred EEEEEEEEEeECcCC----CCCEEEEEEEECCCCccceeeeeeeccccEEEEeeEEEEEEEEEEcCCCCcEeeEEEEEEE
Confidence 568899999999987 223445555555443 3444322 3445799999998843 11225677899999
Q ss_pred EeCCCCCCCCCeeEEEEEeCcccCCCC-CceeEEEecccCCCCcccceEEEEEEEeec
Q 001830 75 YNHNRTTNSKSFLGKVRLTGTSFVPYS-DAVVLHYPLEKRSIFSRVKGELGLKVFVTD 131 (1008)
Q Consensus 75 ~d~~~~~~~d~~lG~~~i~l~~l~~~~-~~~~~~~~L~~~~~~~~~~G~i~~~~~~~~ 131 (1008)
+.....+ +...||.+.|.|+++.... ......++|... ......|.+++.+..
T Consensus 83 ~~~~~~~-~k~~lG~~~inLaey~~~~~~~~~~~~~l~~~---~~~~a~L~isi~~~~ 136 (143)
T PF10358_consen 83 FEVDGSG-KKKVLGKVSINLAEYANEDEEPITVRLLLKKC---KKSNATLSISISLSE 136 (143)
T ss_pred EEecCCC-ccceEEEEEEEHHHhhCcCCCcEEEEEeCccC---CCCCcEEEEEEEEEE
Confidence 9974332 2269999999999987764 444456888765 134567777776644
No 263
>cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c
Probab=94.37 E-value=0.36 Score=46.91 Aligned_cols=101 Identities=18% Similarity=0.226 Sum_probs=69.6
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEE--CCeE----EEeeeecCCCCCeEeeEEEEEe--cc-CCcCeEEEEEEecC
Q 001830 273 YLFVRVVKARDLPSKDVTGSLDPFVEVKV--GNYK----GITKYYEKKQNPEWNEVFAFSR--ER-IQSSVLEVAVKDKD 343 (1008)
Q Consensus 273 ~L~V~v~~a~~L~~~d~~g~~dpyv~v~~--~~~~----~kT~~~~~t~nP~w~e~f~f~~--~~-~~~~~l~i~V~d~d 343 (1008)
.++|+|+++.++...+ .+|-||.+.+ +++. ..|+.+. ..++.|||.+.|++ .+ +.+..|.|+||+..
T Consensus 9 ~~~v~i~~~~~~~~~~---~~~l~V~v~l~~g~~~L~~pv~T~~v~-~~~~~WnEwL~fpI~i~dLPr~ArL~iti~~~~ 84 (158)
T cd08398 9 NLRIKILCATYVNVND---IDKIYVRTGIYHGGEPLCDNVNTQRVP-CSNPRWNEWLDYDIYIPDLPRSARLCLSICSVK 84 (158)
T ss_pred CeEEEEEeeccCCCCC---cCeEEEEEEEEECCEEccCeeEecccC-CCCCccceeEEcccchhcCChhheEEEEEEEEe
Confidence 4889999999987643 4588888755 4432 2454443 37899999999985 33 34578999999975
Q ss_pred C--C---CCeeeEEEEEEccccCCCCCCCCCCccEEEEeecCCCCccceEEEEEEEEec
Q 001830 344 V--V---KDDYVGLVRFDLNEVPTRVPPDSPLAAEWYRLEDRKGEKKKGELMLAVWYGT 397 (1008)
Q Consensus 344 ~--~---~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~G~i~l~~~~~~ 397 (1008)
. + ....+|.+.++|-+.... | .+|...+.+|..+
T Consensus 85 ~~~~~k~~~~~iG~~ni~LFd~~~~-------------L-------r~G~~~L~lW~~~ 123 (158)
T cd08398 85 GRKGAKEEHCPLAWGNINLFDYTDT-------------L-------VSGKMALNLWPVP 123 (158)
T ss_pred cccCCCCceEEEEEEEEEEECCCCh-------------h-------hCCCEEEEEEcCC
Confidence 2 1 235699999887773321 1 2488888888643
No 264
>cd08687 C2_PKN-like C2 domain in Protein kinase C-like (PKN) proteins. PKN is a lipid-activated serine/threonine kinase. It is a member of the protein kinase C (PKC) superfamily, but lacks a C1 domain. There are at least 3 different isoforms of PKN (PRK1/PKNalpha/PAK1; PKNbeta, and PRK2/PAK2/PKNgamma). The C-terminal region contains the Ser/Thr type protein kinase domain, while the N-terminal region of PKN contains three antiparallel coiled-coil (ACC) finger domains which are relatively rich in charged residues and contain a leucine zipper-like sequence. These domains binds to the small GTPase RhoA. Following these domains is a C2-like domain. Its C-terminal part functions as an auto-inhibitory region. PKNs are not activated by classical PKC activators such as diacylglycerol, phorbol ester or Ca2+, but instead are activated by phospholipids and unsaturated fatty acids. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 struct
Probab=94.14 E-value=0.44 Score=40.54 Aligned_cols=83 Identities=18% Similarity=0.150 Sum_probs=57.4
Q ss_pred CCcEEEEEECCee-eccccCCCCCCCeeeeEEEEEecCCCCCCCceEEEEEEeCCCCCCCCCeeEEEEEeCcccCCCCCc
Q 001830 25 SNAFVELHFDGQK-FRTTTKEKDLTPVWNESFYFNISDPHNLSNLALDAYVYNHNRTTNSKSFLGKVRLTGTSFVPYSDA 103 (1008)
Q Consensus 25 ~dPyv~v~~~~~~-~~T~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~~~V~d~~~~~~~d~~lG~~~i~l~~l~~~~~~ 103 (1008)
++-.+++.+++.. .+|.-+ .-.+..|++.|.|.+.. +..|+|.||-+|-. ...|-.-+.|.+..
T Consensus 9 ~eV~avLklDn~~VgqT~Wk-~~s~q~WDQ~Fti~LdR-----sRELEI~VywrD~R----slCav~~lrLEd~~----- 73 (98)
T cd08687 9 SEVSAVLKLDNTVVGQTQWK-PKSNQAWDQSFTLELER-----SRELEIAVYWRDWR----SLCAVKFLKLEDER----- 73 (98)
T ss_pred cceEEEEEEcCeEEeecccc-ccccccccceeEEEeec-----ccEEEEEEEEecch----hhhhheeeEhhhhc-----
Confidence 6788999999864 777754 34678899999999854 24899999998542 46777777776621
Q ss_pred eeEEEecccCCCCcccceEEEEEEEe
Q 001830 104 VVLHYPLEKRSIFSRVKGELGLKVFV 129 (1008)
Q Consensus 104 ~~~~~~L~~~~~~~~~~G~i~~~~~~ 129 (1008)
.....+|++ +|.+...+.+
T Consensus 74 ~~~~~~lep-------qg~l~~ev~f 92 (98)
T cd08687 74 HEVQLDMEP-------QLCLVAELTF 92 (98)
T ss_pred ccceecccc-------ccEEEEEEEe
Confidence 122345544 4677666654
No 265
>cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty
Probab=94.01 E-value=0.4 Score=47.57 Aligned_cols=102 Identities=19% Similarity=0.235 Sum_probs=68.8
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEE--CCeE----EEeeeecCCCCCeEeeEEEEEe--cc-CCcCeEEEEEEecC
Q 001830 273 YLFVRVVKARDLPSKDVTGSLDPFVEVKV--GNYK----GITKYYEKKQNPEWNEVFAFSR--ER-IQSSVLEVAVKDKD 343 (1008)
Q Consensus 273 ~L~V~v~~a~~L~~~d~~g~~dpyv~v~~--~~~~----~kT~~~~~t~nP~w~e~f~f~~--~~-~~~~~l~i~V~d~d 343 (1008)
.++|+|+.+.++... ....+-||++.+ |++. ..|+.+....++.|||.+.|++ .+ +.+..|.|.||+..
T Consensus 9 ~f~i~i~~~~~~~~~--~~~~~l~V~~~lyhG~~~L~~p~~T~~~~~~~~~~Wnewl~F~I~i~dLPr~ArLciti~~~~ 86 (173)
T cd08693 9 KFSITLHKISNLNAA--ERTMKVGVQAGLFHGGESLCKTVKTSEVSGKNDPVWNETLEFDINVCDLPRMARLCFAIYEVS 86 (173)
T ss_pred CEEEEEEEeccCccC--CCCceEEEEEEEEECCEEccCceEccccCCCCccccceeEEcccchhcCChhHeEEEEEEEec
Confidence 589999999999862 234667777644 5542 3565555467799999999975 33 34678999999965
Q ss_pred C-C----------------CCeeeEEEEEEccccCCCCCCCCCCccEEEEeecCCCCccceEEEEEEEEe
Q 001830 344 V-V----------------KDDYVGLVRFDLNEVPTRVPPDSPLAAEWYRLEDRKGEKKKGELMLAVWYG 396 (1008)
Q Consensus 344 ~-~----------------~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~G~i~l~~~~~ 396 (1008)
. . ....||.+.+.|-+... .-.+|...|.+|..
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~ig~~n~~LFd~~~--------------------~Lr~G~~~L~lW~~ 136 (173)
T cd08693 87 KKAKGKRSRKNQTKKKKKKDDNPIAWVNTMVFDYKG--------------------QLKTGDHTLYMWTY 136 (173)
T ss_pred ccccccccccccccccccCcceEEEEEeEEEEcccc--------------------hhhcCCeEEEecCC
Confidence 2 1 13577777777665332 11348888888853
No 266
>PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen []. Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1).
Probab=93.93 E-value=1.5 Score=42.14 Aligned_cols=114 Identities=21% Similarity=0.240 Sum_probs=78.1
Q ss_pred eEEEEEEEeecCCCCCccCCCCCCCCeEEEEEECCEE---EEeeeec-CCCCcccccEEEEEeeC---C------CceEE
Q 001830 600 GVLELGILNADGLHPMKTRDGRGTADTYCVAKYGHKW---VRTRTII-NSLSAKYNEQYTWEVYD---P------ATVLT 666 (1008)
Q Consensus 600 g~L~v~v~~a~~L~~~~~~~~~g~~dpyv~~~~~~~~---~~T~~~~-~~~nP~wne~f~~~v~~---~------~~~l~ 666 (1008)
-.+.+.|.+..+++. .....||+...|+.. ..|.... .+..-.|||.|.+.+.- . ...+.
T Consensus 7 f~~~l~i~~l~~~p~-------~~~~v~v~wkr~~~~~~~~~t~~~~~~~~~v~w~e~~~~~~tl~~~~k~~~~~~K~~~ 79 (143)
T PF10358_consen 7 FQFDLTIHELENLPS-------SNGKVFVKWKRGDKSKGSGTTSRANVKNGKVQWNEEFSFPCTLYRDKKSKEFQPKELK 79 (143)
T ss_pred EEEEEEEEEeECcCC-------CCCEEEEEEEECCCCccceeeeeeeccccEEEEeeEEEEEEEEEEcCCCCcEeeEEEE
Confidence 467888999999883 223466677777664 4555443 45778999999998751 2 12488
Q ss_pred EEEEeCCCCCCCCCCCCceeEEEEEEcccccC--CCeEEeeEeeeecCCCCCccccEEEEEEEEE
Q 001830 667 VGVFDNSHIGGSSGSKDVKIGKVRIRISTLET--GRVYTHSYPLLVLHPSGVKKMGELHLAIRFS 729 (1008)
Q Consensus 667 i~V~d~~~~~~~~~~~d~~lG~~~i~l~~l~~--~~~~~~~~~L~~~~~~~~~~~G~i~l~~~f~ 729 (1008)
|.|+....-+ +...||.+.|+|+++.+ .......++|... ......|++.+++.
T Consensus 80 ~~v~~~~~~~-----~k~~lG~~~inLaey~~~~~~~~~~~~~l~~~----~~~~a~L~isi~~~ 135 (143)
T PF10358_consen 80 FSVFEVDGSG-----KKKVLGKVSINLAEYANEDEEPITVRLLLKKC----KKSNATLSISISLS 135 (143)
T ss_pred EEEEEecCCC-----ccceEEEEEEEHHHhhCcCCCcEEEEEeCccC----CCCCcEEEEEEEEE
Confidence 9998874211 23699999999999866 3566778888643 13346777777765
No 267
>PF02453 Reticulon: Reticulon; InterPro: IPR003388 Eukaryotic proteins of the reticulon (RTN) family all share an association with the endoplasmic reticulum (ER). Whereas amino-terminal regions are not related to one another, all reticulon proteins share a 200 amino acid residue region of sequence similarity at the C-terminal. This region contains two large hydrophobic regions separated by a 66 residue hydrophilic segment. The conserved hydrophobic C-terminal portion has been shown to play an essential role in the association of reticulons with the ER membrane. The hydrophobic portions are supposed to be membrane-embedded and the hydrophilic 66 residue localized to the lumenal/extracellular face of the membrane. Most reticulons have a di-lysine ER retention motif at the C-terminal. Because of their likely association with the rough as well as the smooth ER, the reticulons might play some role in transport processes or in regulation of intracellular calcium levels. It has been suggested that the reticulons may be serving as ER-associated channel-like complexes [, , , ].; GO: 0005783 endoplasmic reticulum; PDB: 2KO2_A 2JV5_A 2G31_A.
Probab=93.91 E-value=0.012 Score=58.61 Aligned_cols=65 Identities=12% Similarity=0.085 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHhccccCChhhHHHHHHHHHHHHHHHHHhhHHHHHHhhhhhhhcCCCCCCCCCC
Q 001830 927 VGDVATQGERIQALLSWRDPRAAAIFVIFCLVAAVVLYVTPFQLLALLAGCYIMRHPRFRHKTPS 991 (1008)
Q Consensus 927 l~~~a~~~e~~~~l~~w~~p~~t~~~~~~~~~~~~~~~~iP~r~i~l~~g~~~~~~P~~~~~~~~ 991 (1008)
...++..+..++.++.|++|..|..++.++.+.+.+..+++...++.+..+..+.=|.+......
T Consensus 90 ~~~~n~~~~~~~~l~~~~~~~~~l~~~~~l~~l~~lg~~~s~~~L~~l~~~~~f~~P~ly~~~~~ 154 (169)
T PF02453_consen 90 AEWINSVLSWLRRLVFGEDPKKSLKVFVVLYILSFLGSWFSFLTLLYLGVLGAFTVPKLYEKYQE 154 (169)
T ss_dssp CCCCCHHHHHHHCCCHCT-TTGGG-----------------------------------------
T ss_pred HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 34556678889999999999999999999989998888888887777766665665655544433
No 268
>cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty
Probab=93.51 E-value=0.69 Score=45.15 Aligned_cols=92 Identities=25% Similarity=0.341 Sum_probs=63.4
Q ss_pred CCCcEEEEEE--CCe----EEEeeeecCCCCCeEeeEEEEEe--ccC-CcCeEEEEEEecC-CCCCeeeEEEEEEccccC
Q 001830 292 SLDPFVEVKV--GNY----KGITKYYEKKQNPEWNEVFAFSR--ERI-QSSVLEVAVKDKD-VVKDDYVGLVRFDLNEVP 361 (1008)
Q Consensus 292 ~~dpyv~v~~--~~~----~~kT~~~~~t~nP~w~e~f~f~~--~~~-~~~~l~i~V~d~d-~~~d~~lG~~~i~l~~l~ 361 (1008)
.++-||.+.+ +++ ...|+.+.-+..+.|||...|++ .++ .+..|.|+|||.+ .+....||.+.++|-+-.
T Consensus 29 ~~~l~V~~~l~~~~~~L~~pv~T~~~~f~~~~~WnEwl~fpI~i~dLP~~a~L~iti~~~~~~~~~~~vg~~~~~lFd~~ 108 (159)
T cd08397 29 NSDLFVTCQVFDDGKPLTLPVQTSYKPFKNRRNWNEWLTLPIKYSDLPRNSQLAITIWDVSGTGKAVPFGGTTLSLFNKD 108 (159)
T ss_pred CCCEEEEEEEEECCEeccCcEEccccCCCCCcccceeEEcccchhcCChhheEEEEEEEecCCCCceEEEEEEEeeECCC
Confidence 4567777654 333 23555555567789999999986 333 4578999999987 446789999999877742
Q ss_pred CCCCCCCCCccEEEEeecCCCCccceEEEEEEEEeccCCCcC
Q 001830 362 TRVPPDSPLAAEWYRLEDRKGEKKKGELMLAVWYGTQADEAF 403 (1008)
Q Consensus 362 ~~~~~~~~~~~~w~~L~~~~~~~~~G~i~l~~~~~~~~~~~~ 403 (1008)
. .| .+|...+.+|....++...
T Consensus 109 g-------------~L-------r~G~~~l~lw~~~~~d~~~ 130 (159)
T cd08397 109 G-------------TL-------RRGRQKLRVWPDVEADGSI 130 (159)
T ss_pred C-------------cE-------ecCCEEEEEEeCCCCCCcc
Confidence 1 11 2488899999776666533
No 269
>cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty
Probab=93.20 E-value=0.36 Score=47.13 Aligned_cols=91 Identities=21% Similarity=0.213 Sum_probs=64.0
Q ss_pred CCCCcEEEEEE--CCee----eccccCCCCCCCeeeeEEEEEecCCCCCCCceEEEEEEeCCCCCCCCCeeEEEEEeCcc
Q 001830 23 GSSNAFVELHF--DGQK----FRTTTKEKDLTPVWNESFYFNISDPHNLSNLALDAYVYNHNRTTNSKSFLGKVRLTGTS 96 (1008)
Q Consensus 23 g~~dPyv~v~~--~~~~----~~T~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~~~V~d~~~~~~~d~~lG~~~i~l~~ 96 (1008)
..+|-||.+.+ +++. .+|+.+.-+..+.|||...|++.-.+-..+..|.|.|||.+... +...+|.+.++|=+
T Consensus 28 ~~~~l~V~~~l~~~~~~L~~pv~T~~~~f~~~~~WnEwl~fpI~i~dLP~~a~L~iti~~~~~~~-~~~~vg~~~~~lFd 106 (159)
T cd08397 28 PNSDLFVTCQVFDDGKPLTLPVQTSYKPFKNRRNWNEWLTLPIKYSDLPRNSQLAITIWDVSGTG-KAVPFGGTTLSLFN 106 (159)
T ss_pred CCCCEEEEEEEEECCEeccCcEEccccCCCCCcccceeEEcccchhcCChhheEEEEEEEecCCC-CceEEEEEEEeeEC
Confidence 45788888755 4542 46666666677999999999976555556678999999986543 56789999998643
Q ss_pred cCCCCCceeEEEecccCCCCcccceEEEEEEEeec
Q 001830 97 FVPYSDAVVLHYPLEKRSIFSRVKGELGLKVFVTD 131 (1008)
Q Consensus 97 l~~~~~~~~~~~~L~~~~~~~~~~G~i~~~~~~~~ 131 (1008)
- ++ . -.+|...+.+|...
T Consensus 107 ~--~g-------~--------Lr~G~~~l~lw~~~ 124 (159)
T cd08397 107 K--DG-------T--------LRRGRQKLRVWPDV 124 (159)
T ss_pred C--CC-------c--------EecCCEEEEEEeCC
Confidence 1 11 1 13588888888544
No 270
>cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c
Probab=92.69 E-value=0.44 Score=47.36 Aligned_cols=112 Identities=21% Similarity=0.162 Sum_probs=74.2
Q ss_pred CceEEEEEEEeeCCCCCCCCCCCCcEEEEEE--CCee----eccccCC----CCCCCeeeeEEEEEecCCCCCCCceEEE
Q 001830 3 HLKLGVEVVSAYELMPKDGQGSSNAFVELHF--DGQK----FRTTTKE----KDLTPVWNESFYFNISDPHNLSNLALDA 72 (1008)
Q Consensus 3 ~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~--~~~~----~~T~~~~----~t~nP~Wne~f~f~v~~~~~~~~~~l~~ 72 (1008)
...+.|+|.++.+++........|=||.+.+ +++. ..|+... -...+.|||...|++.-.+-..+..|.|
T Consensus 7 ~~~~~i~v~~~h~~~~~~~~~~~~~~v~~~l~~g~~~L~~~~~T~~~~~~~~f~~~~~Wnewl~F~i~i~~LPrearL~i 86 (171)
T cd04012 7 TDLLSVTVSSLHRIPPTWVQSFEDFYLSCSLYHGGRLLCSPVTTKPVKITKSFFPRVVWDEWIEFPIPVCQLPRESRLVL 86 (171)
T ss_pred cccEEEEEEEeecCChHHhhccccEEEEEEEEECCEECcCceeccccccccCccccccccceEECccchhcCChhHEEEE
Confidence 3578899999999998765556788888754 5543 3444221 1235789999999975434445568999
Q ss_pred EEEeCCCCCC--------CCCeeEEEEEeCcccCCCCCceeEEEecccCCCCcccceEEEEEEEeec
Q 001830 73 YVYNHNRTTN--------SKSFLGKVRLTGTSFVPYSDAVVLHYPLEKRSIFSRVKGELGLKVFVTD 131 (1008)
Q Consensus 73 ~V~d~~~~~~--------~d~~lG~~~i~l~~l~~~~~~~~~~~~L~~~~~~~~~~G~i~~~~~~~~ 131 (1008)
.||+...... .+..||-+.++|=+-. + . -.+|...+.+|-..
T Consensus 87 tl~~~~~~~~~~~~~~~~~~~~lG~~~~~LFd~~--~-------~--------L~~G~~~L~lW~~~ 136 (171)
T cd04012 87 TLYGTTSSPDGGSNKQRMGPEELGWVSLPLFDFR--G-------V--------LRQGSLLLGLWPPS 136 (171)
T ss_pred EEEEEecCCccccccccccceEEEEEeEeeEcch--h-------h--------hccCCEEEEeccCC
Confidence 9999754321 3468888888854311 0 1 13588888887533
No 271
>KOG1452 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms]
Probab=92.19 E-value=0.37 Score=50.24 Aligned_cols=128 Identities=20% Similarity=0.269 Sum_probs=80.5
Q ss_pred CceeEEEEEEEeecCCCCCccCCCCC-CCCeEEEEEECCE-EEEeeeecCCCCcccccEEEEEeeCCCceEEEEEEeCCC
Q 001830 597 PSIGVLELGILNADGLHPMKTRDGRG-TADTYCVAKYGHK-WVRTRTIINSLSAKYNEQYTWEVYDPATVLTVGVFDNSH 674 (1008)
Q Consensus 597 ~~~g~L~v~v~~a~~L~~~~~~~~~g-~~dpyv~~~~~~~-~~~T~~~~~~~nP~wne~f~~~v~~~~~~l~i~V~d~~~ 674 (1008)
...|.|.+++++++||.... ...| ..|-||++.+..+ ..||.+......-.|.|.|+.++... ..+.+-||.|+.
T Consensus 48 s~tGiL~~H~~~GRGLr~~p--~~kglt~~~ycVle~drqh~aRt~vrs~~~~f~w~e~F~~Dvv~~-~vl~~lvySW~p 124 (442)
T KOG1452|consen 48 SSTGILYFHAYNGRGLRMTP--QQKGLTVCFYCVLEPDRQHPARTRVRSSGPGFAWAEDFKHDVVNI-EVLHYLVYSWPP 124 (442)
T ss_pred cccceEEEEEecccccccCh--hccCceeeeeeeeeecccCccccccccCCCCccchhhceeecccc-eeeeEEEeecCc
Confidence 34599999999999998532 1233 3589999999765 45676665667778999998877543 368888999974
Q ss_pred CCCCCCCCCce--eEEEEEEcccccCCCeEEeeEeeeecCCCCCccccEEEEEEEEEecchhHHHhhhcCCCCC
Q 001830 675 IGGSSGSKDVK--IGKVRIRISTLETGRVYTHSYPLLVLHPSGVKKMGELHLAIRFSYTSFANMMFLYSRPLLP 746 (1008)
Q Consensus 675 ~~~~~~~~d~~--lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~G~i~l~~~f~~~~~~~~~~~~~~~~~p 746 (1008)
-. ++++ +| .|.+..+.+. .-.+-+.|. ...+|++.+.+.+ .++.+.|-+..+|
T Consensus 125 q~-----RHKLC~~g--~l~~~~v~rq-spd~~~Al~------lePrgq~~~r~~~-----~Dp~av~rR~~~P 179 (442)
T KOG1452|consen 125 QR-----RHKLCHLG--LLEAFVVDRQ-SPDRVVALY------LEPRGQPPLRLPL-----ADPEAVTRRTVNP 179 (442)
T ss_pred hh-----hccccccc--hhhhhhhhhc-CCcceeeee------cccCCCCceeccc-----CChHHHhhcccCc
Confidence 33 2332 44 3333333222 113344443 2345888888876 3444445555555
No 272
>cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c
Probab=92.12 E-value=0.54 Score=46.71 Aligned_cols=90 Identities=27% Similarity=0.394 Sum_probs=63.5
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEE--CCEEE----Eeeecc--C-CCCCCcccceeEEEee---CCCCCcEEEEE
Q 001830 437 YVRVNVMEAQDLVISDKNRFPDAYVKVQI--GNQVL----KTKSVQ--S-RTLNPVWNEDMMFVAS---EPFEDHLILTV 504 (1008)
Q Consensus 437 ~L~v~v~~a~~L~~~d~~g~~dpyv~v~l--~~~~~----kT~~v~--~-~~~nP~w~e~f~f~v~---~~~~~~l~i~v 504 (1008)
.+.|+|..+.+++........|-||++.+ |++.. .|+... + -...+.|||.+.|++. -|.+..|.|++
T Consensus 9 ~~~i~v~~~h~~~~~~~~~~~~~~v~~~l~~g~~~L~~~~~T~~~~~~~~f~~~~~Wnewl~F~i~i~~LPrearL~itl 88 (171)
T cd04012 9 LLSVTVSSLHRIPPTWVQSFEDFYLSCSLYHGGRLLCSPVTTKPVKITKSFFPRVVWDEWIEFPIPVCQLPRESRLVLTL 88 (171)
T ss_pred cEEEEEEEeecCChHHhhccccEEEEEEEEECCEECcCceeccccccccCccccccccceEECccchhcCChhHEEEEEE
Confidence 58999999999988775556788988876 65533 333211 0 1235779999999873 24566899999
Q ss_pred EeccCCC---------CCceeEEEEEeCccc
Q 001830 505 EDRVGPN---------KDETIGKVVIPLHSV 526 (1008)
Q Consensus 505 ~d~d~~~---------~d~~lG~~~i~l~~l 526 (1008)
|+....+ .+..||.+.++|-+.
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~lG~~~~~LFd~ 119 (171)
T cd04012 89 YGTTSSPDGGSNKQRMGPEELGWVSLPLFDF 119 (171)
T ss_pred EEEecCCccccccccccceEEEEEeEeeEcc
Confidence 9875443 356899999988764
No 273
>cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks). C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=92.02 E-value=0.92 Score=44.33 Aligned_cols=88 Identities=26% Similarity=0.396 Sum_probs=59.8
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEE--CCEE----EEeeeccCCCCCCcccceeEEEee---CCCCCcEEEEEEec
Q 001830 437 YVRVNVMEAQDLVISDKNRFPDAYVKVQI--GNQV----LKTKSVQSRTLNPVWNEDMMFVAS---EPFEDHLILTVEDR 507 (1008)
Q Consensus 437 ~L~v~v~~a~~L~~~d~~g~~dpyv~v~l--~~~~----~kT~~v~~~~~nP~w~e~f~f~v~---~~~~~~l~i~v~d~ 507 (1008)
.++|++....++... .....+-||++.+ |++. ..|..+ ....++.|||.+.|++. -|....|.|+||+.
T Consensus 9 ~~~i~i~~~~~~~~~-~~~~~~l~V~~~l~~g~~~l~~~~~t~~~-~~~~~~~Wne~l~F~i~~~~LP~~arL~itl~~~ 86 (156)
T cd08380 9 NLRIKIHGITNINLL-DSEDLKLYVRVQLYHGGEPLCPPQSTKKV-PFSTSVTWNEWLTFDILISDLPREARLCLSIYAV 86 (156)
T ss_pred CeEEEEEeecccccc-CCCceeEEEEEEEEECCEEccCceeccCC-cCCCCCcccceeEccchhhcCChhheEEEEEEEE
Confidence 478888888887651 1223566777765 5542 233322 12367999999999863 34567899999997
Q ss_pred cCCC--CCceeEEEEEeCccc
Q 001830 508 VGPN--KDETIGKVVIPLHSV 526 (1008)
Q Consensus 508 d~~~--~d~~lG~~~i~l~~l 526 (1008)
+..+ .+..||.+.++|-+.
T Consensus 87 ~~~~~~~~~~iG~~~~~lFd~ 107 (156)
T cd08380 87 SEPGSKKEVPLGWVNVPLFDY 107 (156)
T ss_pred ecCCCCcceEEEEEeEEeEcc
Confidence 6543 467999999998774
No 274
>cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir
Probab=91.61 E-value=1.1 Score=44.39 Aligned_cols=74 Identities=20% Similarity=0.197 Sum_probs=49.3
Q ss_pred ceEEEEEEEeeCCCCCCCCCCCCcEEEEE--ECCee---eccccCCCCCCCeeeeEEEEEecCCCCCCCceEEEEEEeCC
Q 001830 4 LKLGVEVVSAYELMPKDGQGSSNAFVELH--FDGQK---FRTTTKEKDLTPVWNESFYFNISDPHNLSNLALDAYVYNHN 78 (1008)
Q Consensus 4 ~~L~V~v~~a~~L~~~d~~g~~dPyv~v~--~~~~~---~~T~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~~~V~d~~ 78 (1008)
..++|+|+++..+.. +......-||.+. .+++. .+|+.+.-+.+|.|||...|++.-.+-.....|.|.||+..
T Consensus 10 ~~friki~~~~~~~~-~~~~~~~l~V~~~Ly~g~~~l~~~~T~~~~~~~~~~WnEwL~f~I~~~dLP~~arLc~ti~~~~ 88 (178)
T cd08399 10 RKFRVKILGIDIPVL-PRNTDLTVFVEANIQHGQQVLCQRRTSPKPFTEEVLWNTWLEFDIKIKDLPKGALLNLQIYCGK 88 (178)
T ss_pred CCEEEEEEeecccCc-CCCCceEEEEEEEEEECCeecccceeeccCCCCCccccccEECccccccCChhhEEEEEEEEEe
Confidence 467899999974432 2222233455543 34442 36666666778999999999976555555678999999974
No 275
>smart00142 PI3K_C2 Phosphoinositide 3-kinase, region postulated to contain C2 domain. Outlier of C2 family.
Probab=88.80 E-value=2.3 Score=37.94 Aligned_cols=74 Identities=19% Similarity=0.198 Sum_probs=51.2
Q ss_pred eEEEEEEEeeCCCCCCCCCCCCcEEEEEE--CCee----eccccCCCCCCCeeeeEEEEEecCCCCCCCceEEEEEEeCC
Q 001830 5 KLGVEVVSAYELMPKDGQGSSNAFVELHF--DGQK----FRTTTKEKDLTPVWNESFYFNISDPHNLSNLALDAYVYNHN 78 (1008)
Q Consensus 5 ~L~V~v~~a~~L~~~d~~g~~dPyv~v~~--~~~~----~~T~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~~~V~d~~ 78 (1008)
.+.+.+....+.........++-||.+.+ +++. ..|+.+.-...+.|||...|++.-.+-..+..|.|.||+..
T Consensus 12 ~~~~~~~~~~~~~l~~~~~~~~l~v~~~l~~g~~~l~~pv~t~~~~~~~~~~Wnewl~f~i~i~~LPr~a~L~~~i~~~~ 91 (100)
T smart00142 12 NLVITIALIHGIPLNWSRDYSDLYVEIQLYHGGKLLCLPVSTSYKPFFPSVKWNEWLTFPIQISDLPREARLCITIYEVK 91 (100)
T ss_pred ceEEEEEEeeCCCcccccCcceEEEEEEEEECCEEccCcEEecccCCCCCcccceeEEccCchhcCChhhEEEEEEEEee
Confidence 36677888887766544334588888754 5542 35655555566999999999876544445678999999963
No 276
>cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir
Probab=88.59 E-value=2.8 Score=41.56 Aligned_cols=70 Identities=24% Similarity=0.265 Sum_probs=44.1
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEE--CCEEE---EeeeccCCCCCCcccceeEEEee---CCCCCcEEEEEEecc
Q 001830 437 YVRVNVMEAQDLVISDKNRFPDAYVKVQI--GNQVL---KTKSVQSRTLNPVWNEDMMFVAS---EPFEDHLILTVEDRV 508 (1008)
Q Consensus 437 ~L~v~v~~a~~L~~~d~~g~~dpyv~v~l--~~~~~---kT~~v~~~~~nP~w~e~f~f~v~---~~~~~~l~i~v~d~d 508 (1008)
.++|+|..+.. +..+......-||++.+ |++.. +|... .-+.++.|||-+.|++. -+....|.|+||+..
T Consensus 11 ~friki~~~~~-~~~~~~~~~~l~V~~~Ly~g~~~l~~~~T~~~-~~~~~~~WnEwL~f~I~~~dLP~~arLc~ti~~~~ 88 (178)
T cd08399 11 KFRVKILGIDI-PVLPRNTDLTVFVEANIQHGQQVLCQRRTSPK-PFTEEVLWNTWLEFDIKIKDLPKGALLNLQIYCGK 88 (178)
T ss_pred CEEEEEEeecc-cCcCCCCceEEEEEEEEEECCeecccceeecc-CCCCCccccccEECccccccCChhhEEEEEEEEEe
Confidence 47788888763 33333333345666654 55422 44443 24567999999999873 245668999999863
No 277
>cd08695 C2_Dock-B C2 domains found in Dedicator Of CytoKinesis (Dock) class B proteins. Dock-B is one of 4 classes of Dock family proteins. The members here include: Dock3/MOCA (modifier of cell adhesion) and Dock4. Most of these members have been shown to be GEFs specific for Rac, although Dock4 has also been shown to interact indirectly with the Ras family GTPase Rap1, probably through Rap regulatory proteins. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-B members contain a SH3 domain upstream of the C2 domain and a proline-rich region downstream. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold int
Probab=85.52 E-value=3 Score=41.65 Aligned_cols=57 Identities=14% Similarity=0.220 Sum_probs=41.7
Q ss_pred eeccccCCCCCCCeeeeEEEEEecCCCCCCCceEEEEEEeCCCCCCCC-CeeEEEEEeC
Q 001830 37 KFRTTTKEKDLTPVWNESFYFNISDPHNLSNLALDAYVYNHNRTTNSK-SFLGKVRLTG 94 (1008)
Q Consensus 37 ~~~T~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~~~V~d~~~~~~~d-~~lG~~~i~l 94 (1008)
.++|.+...+.+|.|||++.+.+.. +......|.|.+++.......+ ..+|-+.+||
T Consensus 54 e~~S~V~yH~~~P~W~EtiKi~lP~-~~~~~~HL~FtfrH~S~~~k~~~~pfg~s~lpL 111 (189)
T cd08695 54 EYRSFVLYHNNSPRWNETIKLPIPI-DKFRGSHLRFEFRHCSTKDKGEKKLFGFSFVPL 111 (189)
T ss_pred eEEEEEEEcCCCCCCceeEEEecCh-hhCCCeeEEEEEEEeeeccCCCCCceEEEEEee
Confidence 4788899999999999999999853 5556778999998853221111 4577777775
No 278
>cd08687 C2_PKN-like C2 domain in Protein kinase C-like (PKN) proteins. PKN is a lipid-activated serine/threonine kinase. It is a member of the protein kinase C (PKC) superfamily, but lacks a C1 domain. There are at least 3 different isoforms of PKN (PRK1/PKNalpha/PAK1; PKNbeta, and PRK2/PAK2/PKNgamma). The C-terminal region contains the Ser/Thr type protein kinase domain, while the N-terminal region of PKN contains three antiparallel coiled-coil (ACC) finger domains which are relatively rich in charged residues and contain a leucine zipper-like sequence. These domains binds to the small GTPase RhoA. Following these domains is a C2-like domain. Its C-terminal part functions as an auto-inhibitory region. PKNs are not activated by classical PKC activators such as diacylglycerol, phorbol ester or Ca2+, but instead are activated by phospholipids and unsaturated fatty acids. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 struct
Probab=85.49 E-value=8 Score=33.21 Aligned_cols=85 Identities=12% Similarity=0.123 Sum_probs=57.2
Q ss_pred CCCCeEEEEEECCEE-EEeeeecCCCCcccccEEEEEeeCCCceEEEEEEeCCCCCCCCCCCCceeEEEEEEcccccCCC
Q 001830 622 GTADTYCVAKYGHKW-VRTRTIINSLSAKYNEQYTWEVYDPATVLTVGVFDNSHIGGSSGSKDVKIGKVRIRISTLETGR 700 (1008)
Q Consensus 622 g~~dpyv~~~~~~~~-~~T~~~~~~~nP~wne~f~~~v~~~~~~l~i~V~d~~~~~~~~~~~d~~lG~~~i~l~~l~~~~ 700 (1008)
|-++-.|++++.+.. .+|... ...+..|++.|.+++. ...+|+|.||=+|. ..+-|-..+.|.+...+
T Consensus 7 ~~~eV~avLklDn~~VgqT~Wk-~~s~q~WDQ~Fti~Ld-RsRELEI~VywrD~--------RslCav~~lrLEd~~~~- 75 (98)
T cd08687 7 GCSEVSAVLKLDNTVVGQTQWK-PKSNQAWDQSFTLELE-RSRELEIAVYWRDW--------RSLCAVKFLKLEDERHE- 75 (98)
T ss_pred cccceEEEEEEcCeEEeecccc-ccccccccceeEEEee-cccEEEEEEEEecc--------hhhhhheeeEhhhhccc-
Confidence 336789999998854 466653 3368899999999874 45589999987652 34556667777773322
Q ss_pred eEEeeEeeeecCCCCCccccEEEEEEEE
Q 001830 701 VYTHSYPLLVLHPSGVKKMGELHLAIRF 728 (1008)
Q Consensus 701 ~~~~~~~L~~~~~~~~~~~G~i~l~~~f 728 (1008)
...+| ...|.+..++.|
T Consensus 76 ---~~~~l--------epqg~l~~ev~f 92 (98)
T cd08687 76 ---VQLDM--------EPQLCLVAELTF 92 (98)
T ss_pred ---ceecc--------ccccEEEEEEEe
Confidence 22233 344888888776
No 279
>PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A ....
Probab=85.38 E-value=10 Score=36.21 Aligned_cols=74 Identities=23% Similarity=0.390 Sum_probs=49.1
Q ss_pred EeeeecCC-CCCeEeeEEEEEe--cc-CCcCeEEEEEEecCCC-CC----eeeEEEEEEccccCCCCCCCCCCccEEEEe
Q 001830 307 ITKYYEKK-QNPEWNEVFAFSR--ER-IQSSVLEVAVKDKDVV-KD----DYVGLVRFDLNEVPTRVPPDSPLAAEWYRL 377 (1008)
Q Consensus 307 kT~~~~~t-~nP~w~e~f~f~~--~~-~~~~~l~i~V~d~d~~-~d----~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L 377 (1008)
.|+.+..+ .++.|||.+.|++ .+ +....|.|.||+.+.. .. ..||.+.++|-+.... |
T Consensus 23 ~T~~~~~~~~~~~W~e~l~F~i~i~~LPr~a~L~~~l~~~~~~~~~~~~~~~lgw~n~~lFd~~~~-------------L 89 (142)
T PF00792_consen 23 STSYVPFSFSRPKWDEWLTFPIPISDLPREARLCFTLYGVDSKKKSKKKKVPLGWVNLPLFDYRGQ-------------L 89 (142)
T ss_dssp E-S-EESS-SSEEEEEEEEEEEEGGGS-TTEEEEEEEEEEECSTTT--EEEEEEEEEEESB-TTSB-------------B
T ss_pred eccccccccccceEeeEEEeecChHHCChhHeEEEEEEEecCCCccccceeEEEEEEEEeECCCCc-------------c
Confidence 56655555 7999999999985 34 3557899999998743 33 7999999998776321 1
Q ss_pred ecCCCCccceEEEEEEEEeccCC
Q 001830 378 EDRKGEKKKGELMLAVWYGTQAD 400 (1008)
Q Consensus 378 ~~~~~~~~~G~i~l~~~~~~~~~ 400 (1008)
..|...+.+|-....+
T Consensus 90 -------~~G~~~L~lW~~~~~~ 105 (142)
T PF00792_consen 90 -------RQGPQKLSLWPDEEPD 105 (142)
T ss_dssp -------EEEEEEEE-EET-TTS
T ss_pred -------cCCCEEEEEEcCCCCc
Confidence 3488899998654433
No 280
>PF11618 DUF3250: Protein of unknown function (DUF3250); InterPro: IPR021656 This family of proteins represents a protein with unknown function. It may be the C2 domain from KIAA1005 however this cannot be confirmed. ; PDB: 2YRB_A.
Probab=85.37 E-value=6.7 Score=35.34 Aligned_cols=94 Identities=19% Similarity=0.259 Sum_probs=50.5
Q ss_pred EEEEEECCEEEEeeeecCCCCcccccEEEEEeeCC--------CceEEEEEEeCCCCCCCCCCCCceeEEEEEEccccc-
Q 001830 627 YCVAKYGHKWVRTRTIINSLSAKYNEQYTWEVYDP--------ATVLTVGVFDNSHIGGSSGSKDVKIGKVRIRISTLE- 697 (1008)
Q Consensus 627 yv~~~~~~~~~~T~~~~~~~nP~wne~f~~~v~~~--------~~~l~i~V~d~~~~~~~~~~~d~~lG~~~i~l~~l~- 697 (1008)
||.+.+-.....|..+....+|.+|-+-.+.|.-. ...+.|++...- +.....||.+.|++..+.
T Consensus 2 Fct~dFydfEtq~Tpvv~G~~p~y~fts~y~V~~d~~fl~YLq~~~~~lELhqa~------g~d~~tla~~~i~l~~ll~ 75 (107)
T PF11618_consen 2 FCTYDFYDFETQTTPVVRGLNPFYDFTSQYKVTMDDLFLHYLQTGSLTLELHQAL------GSDFETLAAGQISLRPLLE 75 (107)
T ss_dssp EEEE-STT---EE---EESSS----EEEEEEE--SHHHHHHHHH--EEEEEEEE-------SS-EEEEEEEEE--SHHHH
T ss_pred EEEEEeeceeeecccceeCCCccceeEEEEEEEcCHHHHHHhhcCCEEEEEEeec------cCCeEEEEEEEeechhhhc
Confidence 56666644443344444588999998888877632 346999998864 235889999999999974
Q ss_pred -CCCeEEeeEeeeecCCCCCccccEEEEEEEEE
Q 001830 698 -TGRVYTHSYPLLVLHPSGVKKMGELHLAIRFS 729 (1008)
Q Consensus 698 -~~~~~~~~~~L~~~~~~~~~~~G~i~l~~~f~ 729 (1008)
.+........|.....+ ..|.|...+++.
T Consensus 76 ~~~~~i~~~~~l~g~~~~---~~g~l~y~~rl~ 105 (107)
T PF11618_consen 76 SNGERIHGSATLVGVSGE---DFGTLEYWIRLR 105 (107)
T ss_dssp --S--EEEEEEE-BSSS----TSEEEEEEEEEE
T ss_pred CCCceEEEEEEEeccCCC---eEEEEEEEEEec
Confidence 23345566666544332 459999988875
No 281
>PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A ....
Probab=85.01 E-value=2.4 Score=40.61 Aligned_cols=75 Identities=19% Similarity=0.202 Sum_probs=48.5
Q ss_pred ccccCCCC-CCCeeeeEEEEEecCCCCCCCceEEEEEEeCCCCCCCC----CeeEEEEEeCcccCCCCCceeEEEecccC
Q 001830 39 RTTTKEKD-LTPVWNESFYFNISDPHNLSNLALDAYVYNHNRTTNSK----SFLGKVRLTGTSFVPYSDAVVLHYPLEKR 113 (1008)
Q Consensus 39 ~T~~~~~t-~nP~Wne~f~f~v~~~~~~~~~~l~~~V~d~~~~~~~d----~~lG~~~i~l~~l~~~~~~~~~~~~L~~~ 113 (1008)
.|+.+.-+ .++.|||...|++.-.+-..+..|.|.||+.+... .+ ..||-+.++|-+. .+.
T Consensus 23 ~T~~~~~~~~~~~W~e~l~F~i~i~~LPr~a~L~~~l~~~~~~~-~~~~~~~~lgw~n~~lFd~--~~~----------- 88 (142)
T PF00792_consen 23 STSYVPFSFSRPKWDEWLTFPIPISDLPREARLCFTLYGVDSKK-KSKKKKVPLGWVNLPLFDY--RGQ----------- 88 (142)
T ss_dssp E-S-EESS-SSEEEEEEEEEEEEGGGS-TTEEEEEEEEEEECST-TT--EEEEEEEEEEESB-T--TSB-----------
T ss_pred eccccccccccceEeeEEEeecChHHCChhHeEEEEEEEecCCC-ccccceeEEEEEEEEeECC--CCc-----------
Confidence 56555555 79999999999965444445678999999986543 23 5899999996442 111
Q ss_pred CCCcccceEEEEEEEeec
Q 001830 114 SIFSRVKGELGLKVFVTD 131 (1008)
Q Consensus 114 ~~~~~~~G~i~~~~~~~~ 131 (1008)
-.+|...+.++-..
T Consensus 89 ----L~~G~~~L~lW~~~ 102 (142)
T PF00792_consen 89 ----LRQGPQKLSLWPDE 102 (142)
T ss_dssp ----BEEEEEEEE-EET-
T ss_pred ----ccCCCEEEEEEcCC
Confidence 23588888885433
No 282
>cd08694 C2_Dock-A C2 domains found in Dedicator Of CytoKinesis (Dock) class A proteins. Dock-A is one of 4 classes of Dock family proteins. The members here include: Dock180/Dock1, Dock2, and Dock5. Most of these members have been shown to be GEFs specific for Rac. Dock5 has not been well characterized to date, but most likely also is a GEF specific for Rac. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-A members contain a proline-rich region and a SH3 domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=84.98 E-value=8.5 Score=38.57 Aligned_cols=57 Identities=11% Similarity=0.123 Sum_probs=42.3
Q ss_pred eeccccCCCCCCCeeeeEEEEEecCCCCCCCceEEEEEEeCCCCCCCC---CeeEEEEEeC
Q 001830 37 KFRTTTKEKDLTPVWNESFYFNISDPHNLSNLALDAYVYNHNRTTNSK---SFLGKVRLTG 94 (1008)
Q Consensus 37 ~~~T~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~~~V~d~~~~~~~d---~~lG~~~i~l 94 (1008)
.++|.+.....+|.|||++.+.+.. +...+..|.|.+++....-.+| ..+|-+.+||
T Consensus 54 e~~S~V~Yh~~~P~W~EtIKl~lP~-~~~~~~HL~FtfrH~S~~~~kd~~e~pfg~s~lpL 113 (196)
T cd08694 54 EYKSVIYYQVDKPKWFETFKVAIPI-EDFKSSHLRFTFKHRSSNEAKDKSEKPFALSFVKL 113 (196)
T ss_pred eEEEEEEeecCCCCCceeEEEecCh-hhCCCeEEEEEEEeeccccccCCCCCceEEEEEee
Confidence 4788888999999999999999853 5566778999998864322223 4577777775
No 283
>PF14429 DOCK-C2: C2 domain in Dock180 and Zizimin proteins; PDB: 3L4C_A.
Probab=82.10 E-value=4.3 Score=40.89 Aligned_cols=58 Identities=10% Similarity=0.135 Sum_probs=34.5
Q ss_pred eccccCCCCCCCeeeeEEEEEecCCCCCCCceEEEEEEeCCCCCCCC--CeeEEEEEeCcc
Q 001830 38 FRTTTKEKDLTPVWNESFYFNISDPHNLSNLALDAYVYNHNRTTNSK--SFLGKVRLTGTS 96 (1008)
Q Consensus 38 ~~T~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~~~V~d~~~~~~~d--~~lG~~~i~l~~ 96 (1008)
+.|.+..++.+|.|+|+|.+.+.. +...+..|.|.+++...-..++ ..+|-+.+||-+
T Consensus 61 ~~S~v~yh~k~P~f~deiKi~LP~-~l~~~~HLlFtf~h~s~~~~~~~~~~~g~a~lpL~~ 120 (184)
T PF14429_consen 61 YYSSVYYHNKNPQFNDEIKIQLPP-DLFPKHHLLFTFYHVSCKESKEKSKPFGYAFLPLMD 120 (184)
T ss_dssp EE----TT-SS-EEEEEEEEEE-C-CCCTTEEEEEEEEE---SSSS-SS-EEEEEEEESB-
T ss_pred EEEEEEecCCCCCccEEEEEEcCc-hhcccEEEEEEEEeeccccccCccceeEEEEEEeee
Confidence 677788899999999999999842 3345678999999975432222 578888888544
No 284
>cd08695 C2_Dock-B C2 domains found in Dedicator Of CytoKinesis (Dock) class B proteins. Dock-B is one of 4 classes of Dock family proteins. The members here include: Dock3/MOCA (modifier of cell adhesion) and Dock4. Most of these members have been shown to be GEFs specific for Rac, although Dock4 has also been shown to interact indirectly with the Ras family GTPase Rap1, probably through Rap regulatory proteins. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-B members contain a SH3 domain upstream of the C2 domain and a proline-rich region downstream. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold int
Probab=81.98 E-value=13 Score=37.30 Aligned_cols=39 Identities=15% Similarity=0.312 Sum_probs=32.2
Q ss_pred EEEeeeecCCCCCeEeeEEEEEe--ccCCcCeEEEEEEecC
Q 001830 305 KGITKYYEKKQNPEWNEVFAFSR--ERIQSSVLEVAVKDKD 343 (1008)
Q Consensus 305 ~~kT~~~~~t~nP~w~e~f~f~~--~~~~~~~l~i~V~d~d 343 (1008)
.++|.+..++.+|.|+|++.+.+ +......|.|+.+...
T Consensus 54 e~~S~V~yH~~~P~W~EtiKi~lP~~~~~~~HL~FtfrH~S 94 (189)
T cd08695 54 EYRSFVLYHNNSPRWNETIKLPIPIDKFRGSHLRFEFRHCS 94 (189)
T ss_pred eEEEEEEEcCCCCCCceeEEEecChhhCCCeeEEEEEEEee
Confidence 57899999999999999999876 4446678999888764
No 285
>PF14429 DOCK-C2: C2 domain in Dock180 and Zizimin proteins; PDB: 3L4C_A.
Probab=81.90 E-value=5.3 Score=40.21 Aligned_cols=58 Identities=10% Similarity=0.089 Sum_probs=34.7
Q ss_pred EEEeeeecCCCCcccccEEEEEeeCC---CceEEEEEEeCCCCCCCCCCCCceeEEEEEEccc
Q 001830 636 WVRTRTIINSLSAKYNEQYTWEVYDP---ATVLTVGVFDNSHIGGSSGSKDVKIGKVRIRIST 695 (1008)
Q Consensus 636 ~~~T~~~~~~~nP~wne~f~~~v~~~---~~~l~i~V~d~~~~~~~~~~~d~~lG~~~i~l~~ 695 (1008)
.+.|.+..++.+|.|+|+|.+.++.. ..-|.|++++...-. ...++..+|.+.+||-+
T Consensus 60 ~~~S~v~yh~k~P~f~deiKi~LP~~l~~~~HLlFtf~h~s~~~--~~~~~~~~g~a~lpL~~ 120 (184)
T PF14429_consen 60 SYYSSVYYHNKNPQFNDEIKIQLPPDLFPKHHLLFTFYHVSCKE--SKEKSKPFGYAFLPLMD 120 (184)
T ss_dssp -EE----TT-SS-EEEEEEEEEE-CCCCTTEEEEEEEEE---SS--SS-SS-EEEEEEEESB-
T ss_pred EEEEEEEecCCCCCccEEEEEEcCchhcccEEEEEEEEeecccc--ccCccceeEEEEEEeee
Confidence 46788888999999999999998854 456999999986532 11222799999999987
No 286
>PF15625 CC2D2AN-C2: CC2D2A N-terminal C2 domain
Probab=81.18 E-value=24 Score=34.82 Aligned_cols=88 Identities=15% Similarity=0.263 Sum_probs=57.6
Q ss_pred CCcEEEEEECCE-EEEeeecc-CCCCCCcccceeEEEeeCCCCCcEEEEEEeccCCCCCceeEEEEEeCccccccccCCc
Q 001830 457 PDAYVKVQIGNQ-VLKTKSVQ-SRTLNPVWNEDMMFVASEPFEDHLILTVEDRVGPNKDETIGKVVIPLHSVEKRADDRI 534 (1008)
Q Consensus 457 ~dpyv~v~l~~~-~~kT~~v~-~~~~nP~w~e~f~f~v~~~~~~~l~i~v~d~d~~~~d~~lG~~~i~l~~l~~~~~~~~ 534 (1008)
..-|+++.++++ ..+|+... .....-.|||.|.+.+.. ..+.|.|.||.... ..+..|+.+.+++-..........
T Consensus 37 ~~~~ikl~~N~k~V~~T~~~~l~~dF~v~f~~~f~v~i~~-~Pesi~l~i~E~~~-~~~~~la~v~vpvP~~~~~~~~~~ 114 (168)
T PF15625_consen 37 TRYYIKLFFNDKEVSRTRSRPLWSDFRVHFNEIFNVQITR-WPESIKLEIYEKSG-LSDRLLAEVFVPVPGSTVHTSTDN 114 (168)
T ss_pred eeEEEEEEECCEEEEeeeeEecCCCeEEeccCEEEEEEec-CCCEEEEEEEEccC-ccceEEEEEEeeCCCCcccccccC
Confidence 456899999876 44555321 122334568999998866 46789999999866 678899999999866543321111
Q ss_pred ccceeEEcccCc
Q 001830 535 VHTRWFNLEKSV 546 (1008)
Q Consensus 535 ~~~~w~~L~~~~ 546 (1008)
....|+.+....
T Consensus 115 ~~~~~~eFsS~~ 126 (168)
T PF15625_consen 115 VPLEEYEFSSDQ 126 (168)
T ss_pred CceEeEEEcCCc
Confidence 145666665543
No 287
>cd08694 C2_Dock-A C2 domains found in Dedicator Of CytoKinesis (Dock) class A proteins. Dock-A is one of 4 classes of Dock family proteins. The members here include: Dock180/Dock1, Dock2, and Dock5. Most of these members have been shown to be GEFs specific for Rac. Dock5 has not been well characterized to date, but most likely also is a GEF specific for Rac. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-A members contain a proline-rich region and a SH3 domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=80.91 E-value=10 Score=37.96 Aligned_cols=40 Identities=25% Similarity=0.394 Sum_probs=33.0
Q ss_pred eEEEeeeecCCCCCeEeeEEEEEe--ccCCcCeEEEEEEecC
Q 001830 304 YKGITKYYEKKQNPEWNEVFAFSR--ERIQSSVLEVAVKDKD 343 (1008)
Q Consensus 304 ~~~kT~~~~~t~nP~w~e~f~f~~--~~~~~~~l~i~V~d~d 343 (1008)
..++|-+..++.+|.|+|++.+.+ +...+..|.|+++...
T Consensus 53 se~~S~V~Yh~~~P~W~EtIKl~lP~~~~~~~HL~FtfrH~S 94 (196)
T cd08694 53 DEYKSVIYYQVDKPKWFETFKVAIPIEDFKSSHLRFTFKHRS 94 (196)
T ss_pred eeEEEEEEeecCCCCCceeEEEecChhhCCCeEEEEEEEeec
Confidence 357899999999999999998876 4456678999998864
No 288
>smart00142 PI3K_C2 Phosphoinositide 3-kinase, region postulated to contain C2 domain. Outlier of C2 family.
Probab=79.90 E-value=10 Score=33.84 Aligned_cols=70 Identities=21% Similarity=0.349 Sum_probs=45.5
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEE--CCEEE----EeeeccCCCCCCcccceeEEEee---CCCCCcEEEEEEecc
Q 001830 438 VRVNVMEAQDLVISDKNRFPDAYVKVQI--GNQVL----KTKSVQSRTLNPVWNEDMMFVAS---EPFEDHLILTVEDRV 508 (1008)
Q Consensus 438 L~v~v~~a~~L~~~d~~g~~dpyv~v~l--~~~~~----kT~~v~~~~~nP~w~e~f~f~v~---~~~~~~l~i~v~d~d 508 (1008)
+.+.+..+++.........++-||++.+ |++.. .|+.+ .-...+.|||-+.|++. -|....|.|++|+..
T Consensus 13 ~~~~~~~~~~~~l~~~~~~~~l~v~~~l~~g~~~l~~pv~t~~~-~~~~~~~Wnewl~f~i~i~~LPr~a~L~~~i~~~~ 91 (100)
T smart00142 13 LVITIALIHGIPLNWSRDYSDLYVEIQLYHGGKLLCLPVSTSYK-PFFPSVKWNEWLTFPIQISDLPREARLCITIYEVK 91 (100)
T ss_pred eEEEEEEeeCCCcccccCcceEEEEEEEEECCEEccCcEEeccc-CCCCCcccceeEEccCchhcCChhhEEEEEEEEee
Confidence 5566677777655443333578888876 55432 34433 23455899999999763 345678999999864
No 289
>KOG1329 consensus Phospholipase D1 [Lipid transport and metabolism]
Probab=79.12 E-value=2.5 Score=51.21 Aligned_cols=103 Identities=17% Similarity=0.169 Sum_probs=80.5
Q ss_pred CCCCeEEEEEECCEE-EEeeeecCC-CCcccccEEEEEeeCCCceEEEEEEeCCCCCCCCCCCCceeEEEEEEcccccCC
Q 001830 622 GTADTYCVAKYGHKW-VRTRTIINS-LSAKYNEQYTWEVYDPATVLTVGVFDNSHIGGSSGSKDVKIGKVRIRISTLETG 699 (1008)
Q Consensus 622 g~~dpyv~~~~~~~~-~~T~~~~~~-~nP~wne~f~~~v~~~~~~l~i~V~d~~~~~~~~~~~d~~lG~~~i~l~~l~~~ 699 (1008)
...++|+.+.+.... .+|..+.+. .+|.|.+.|..........+.+.|-+.+..| -...+|.+.++...+..+
T Consensus 136 ~~~e~Ylt~~l~~~~~~~t~~~~~f~e~s~~~f~~~~~~~h~~g~v~~~~~~~~~~G-----~s~~w~~v~~s~~~~~~~ 210 (887)
T KOG1329|consen 136 KTLENYLTVVLHKARYRRTHVIYEFLENSRWSFSFDIGFAHKAGYVIFRVKGARVPG-----WSKRWGRVKISFLQYCSG 210 (887)
T ss_pred hhccchheeeechhhhhchhhhhcccccchhhhhccccccccccEEEEeecCCcccc-----ceeEEEEeccchhhhhcc
Confidence 346899999987755 478877777 8999999998888888888999999988765 689999999999999988
Q ss_pred CeEEeeEeeeecCCCCCccccEEEEEEEEE
Q 001830 700 RVYTHSYPLLVLHPSGVKKMGELHLAIRFS 729 (1008)
Q Consensus 700 ~~~~~~~~L~~~~~~~~~~~G~i~l~~~f~ 729 (1008)
.....|+++...+.....+.-.+.+.+.|.
T Consensus 211 ~~~~~~~~Il~~d~~~~~~~~~~~~~~~~~ 240 (887)
T KOG1329|consen 211 HRIGGWFPILDNDGKPHQKGSNESLRLGFT 240 (887)
T ss_pred ccccceeeeeccCCccccCCcccceEEeeE
Confidence 888999999876654333323444545554
No 290
>PF11696 DUF3292: Protein of unknown function (DUF3292); InterPro: IPR021709 This eukaryotic family of proteins has no known function.
Probab=76.01 E-value=6.9 Score=46.16 Aligned_cols=60 Identities=32% Similarity=0.394 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHHhccccCChhhHHHHHHHHHHHHHHHHHhhHHHHHHhhhhhhhcCCCCCC
Q 001830 925 TVVGDVATQGERIQALLSWRDPRAAAIFVIFCLVAAVVLYVTPFQLLALLAGCYIMRHPRFRH 987 (1008)
Q Consensus 925 ~~l~~~a~~~e~~~~l~~w~~p~~t~~~~~~~~~~~~~~~~iP~r~i~l~~g~~~~~~P~~~~ 987 (1008)
.++=.++.+...+.-|.+|++|+.|..|+.+.+++.++-+++|.-+++|+..+ .+|..|.
T Consensus 103 tv~v~~~~~~khi~RLrSW~eprRT~~fc~vYf~aW~~dll~p~~~~~L~~li---~~P~~r~ 162 (642)
T PF11696_consen 103 TVVVGLAAFIKHIARLRSWREPRRTAAFCAVYFIAWLLDLLVPAFFAFLIALI---LSPPARS 162 (642)
T ss_pred ehHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCccccc
Confidence 34455566677888899999999999999999999988888998655555333 4566655
No 291
>PF06219 DUF1005: Protein of unknown function (DUF1005); InterPro: IPR010410 This is a family of plant proteins with undetermined function.
Probab=74.11 E-value=37 Score=37.77 Aligned_cols=109 Identities=15% Similarity=0.175 Sum_probs=64.6
Q ss_pred CCCeEEEEEECCEEEEeeeecC--C--CCc-cc-c--cEEEEEee------CC------CceEEEEEEeCCCCCC-CCCC
Q 001830 623 TADTYCVAKYGHKWVRTRTIIN--S--LSA-KY-N--EQYTWEVY------DP------ATVLTVGVFDNSHIGG-SSGS 681 (1008)
Q Consensus 623 ~~dpyv~~~~~~~~~~T~~~~~--~--~nP-~w-n--e~f~~~v~------~~------~~~l~i~V~d~~~~~~-~~~~ 681 (1008)
.+.+||+|++.+--.+|..+.- . .+| .= + -.|++.-. .+ ...|.|.||.-..-.. +...
T Consensus 35 sspCfC~IrL~~fP~Qta~vPLi~~~~~~~p~~~~~Aa~F~Ld~s~l~~l~~~~~f~~~~~~L~i~VY~Gr~G~tCGv~~ 114 (460)
T PF06219_consen 35 SSPCFCEIRLKGFPSQTAPVPLISSSEPEPPDSHSLAASFHLDKSDLRRLLAKPCFYSPRPCLEISVYTGRRGSTCGVGN 114 (460)
T ss_pred CCCeEEEEecCCCCccceeeeeccCCCCCCCCcCCcceEEecCHHHHHHHhCCCccccCCceEEEEEEECCCCCcccccc
Confidence 4578999999987777766642 1 121 11 1 23444211 11 2569999998543210 0124
Q ss_pred CCceeEEEEEEcccc-cCC---CeEEeeEeeeecCCCC-CccccEEEEEEEEEec
Q 001830 682 KDVKIGKVRIRISTL-ETG---RVYTHSYPLLVLHPSG-VKKMGELHLAIRFSYT 731 (1008)
Q Consensus 682 ~d~~lG~~~i~l~~l-~~~---~~~~~~~~L~~~~~~~-~~~~G~i~l~~~f~~~ 731 (1008)
...+||++.|+|.-- ..+ ..+..|..+-..+.++ .....+|||.++.+++
T Consensus 115 ~~klLG~v~vpldl~~ae~kp~v~hnGWi~iGk~~~~~~~~~~aeLHl~Vr~EpD 169 (460)
T PF06219_consen 115 SGKLLGKVRVPLDLKWAEGKPVVFHNGWISIGKNKQGSGKSPSAELHLVVRAEPD 169 (460)
T ss_pred cceEEEEEEEEeccccccCCeeEEEccceecCCCCCCCCCCCcceEEEEEeccCC
Confidence 779999999998632 112 2457799886544322 2235799999887654
No 292
>PF11618 DUF3250: Protein of unknown function (DUF3250); InterPro: IPR021656 This family of proteins represents a protein with unknown function. It may be the C2 domain from KIAA1005 however this cannot be confirmed. ; PDB: 2YRB_A.
Probab=73.64 E-value=14 Score=33.28 Aligned_cols=95 Identities=13% Similarity=0.082 Sum_probs=50.2
Q ss_pred EEEEEECCe-EEEeeeecCCCCCeEeeEEEEEecc-------CCcCeEEEEEEecCCCCCeeeEEEEEEccccCCCCCCC
Q 001830 296 FVEVKVGNY-KGITKYYEKKQNPEWNEVFAFSRER-------IQSSVLEVAVKDKDVVKDDYVGLVRFDLNEVPTRVPPD 367 (1008)
Q Consensus 296 yv~v~~~~~-~~kT~~~~~t~nP~w~e~f~f~~~~-------~~~~~l~i~V~d~d~~~d~~lG~~~i~l~~l~~~~~~~ 367 (1008)
||.+.+-.. .+.|.++. +.+|.+|-+-.|.+.. +++..+.|+++..-...-+.+|.+.+++..+..+.
T Consensus 2 Fct~dFydfEtq~Tpvv~-G~~p~y~fts~y~V~~d~~fl~YLq~~~~~lELhqa~g~d~~tla~~~i~l~~ll~~~--- 77 (107)
T PF11618_consen 2 FCTYDFYDFETQTTPVVR-GLNPFYDFTSQYKVTMDDLFLHYLQTGSLTLELHQALGSDFETLAAGQISLRPLLESN--- 77 (107)
T ss_dssp EEEE-STT---EE---EE-SSS----EEEEEEE--SHHHHHHHHH--EEEEEEEE-SS-EEEEEEEEE--SHHHH-----
T ss_pred EEEEEeeceeeeccccee-CCCccceeEEEEEEEcCHHHHHHhhcCCEEEEEEeeccCCeEEEEEEEeechhhhcCC---
Confidence 555655553 45666665 8999999998888642 35678999998876445789999999999998542
Q ss_pred CCCccEEEEeecCCCCccceEEEEEEEE
Q 001830 368 SPLAAEWYRLEDRKGEKKKGELMLAVWY 395 (1008)
Q Consensus 368 ~~~~~~w~~L~~~~~~~~~G~i~l~~~~ 395 (1008)
......-..|.+..++ ..|.|...+..
T Consensus 78 ~~~i~~~~~l~g~~~~-~~g~l~y~~rl 104 (107)
T PF11618_consen 78 GERIHGSATLVGVSGE-DFGTLEYWIRL 104 (107)
T ss_dssp S--EEEEEEE-BSSS--TSEEEEEEEEE
T ss_pred CceEEEEEEEeccCCC-eEEEEEEEEEe
Confidence 1123344556555554 66877766543
No 293
>KOG3543 consensus Ca2+-dependent activator protein [Signal transduction mechanisms]
Probab=73.52 E-value=18 Score=41.57 Aligned_cols=118 Identities=18% Similarity=0.233 Sum_probs=80.2
Q ss_pred eEEEEEEEeecCCCCCccCCCCCCCCeEEEEEECCEEEEeeeecCCCCcccccEEEEEeeCCCceEEEEEEeCCCCCCCC
Q 001830 600 GVLELGILNADGLHPMKTRDGRGTADTYCVAKYGHKWVRTRTIINSLSAKYNEQYTWEVYDPATVLTVGVFDNSHIGGSS 679 (1008)
Q Consensus 600 g~L~v~v~~a~~L~~~~~~~~~g~~dpyv~~~~~~~~~~T~~~~~~~nP~wne~f~~~v~~~~~~l~i~V~d~~~~~~~~ 679 (1008)
-.++|.|.+.+||+... ..-=.||...+.+.+.+|... ....|.|..+=.|.-.+|-..+.+.+|.+..-- -
T Consensus 341 ~smevvvmevqglksva-----pnrivyctmevegeklqtdqa-easkp~wgtqgdfstthplpvvkvklftestgv--l 412 (1218)
T KOG3543|consen 341 LSMEVVVMEVQGLKSVA-----PNRIVYCTMEVEGEKLQTDQA-EASKPKWGTQGDFSTTHPLPVVKVKLFTESTGV--L 412 (1218)
T ss_pred eeeeEEEeeeccccccC-----CCeeEEEEEEecccccccchh-hhcCCCCCcCCCcccCCCCceeEEEEEeeccee--E
Confidence 45788999999999642 222489999999988888753 456899999888888888888889888775311 1
Q ss_pred CCCCceeEEEEEEcccccCCCeEEeeEeeeecCCCCCccccEEEEEEEE
Q 001830 680 GSKDVKIGKVRIRISTLETGRVYTHSYPLLVLHPSGVKKMGELHLAIRF 728 (1008)
Q Consensus 680 ~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~G~i~l~~~f 728 (1008)
.-.|.-||++.+-...= ......|+.+...+.... ..-.|.|+++.
T Consensus 413 aledkelgrvil~ptpn--s~ks~ewh~mtvpknsqd-qdlkiklavrm 458 (1218)
T KOG3543|consen 413 ALEDKELGRVILQPTPN--SAKSPEWHTMTVPKNSQD-QDLKIKLAVRM 458 (1218)
T ss_pred EeechhhCeEEEecCCC--CcCCccceeeecCCCCcC-ccceEEEEEec
Confidence 23688899998865432 222247777764433221 22455666655
No 294
>PF15625 CC2D2AN-C2: CC2D2A N-terminal C2 domain
Probab=72.72 E-value=25 Score=34.75 Aligned_cols=68 Identities=16% Similarity=0.218 Sum_probs=52.3
Q ss_pred CCeEEEEEECCEEE-EeeeecCC--CCcccccEEEEEeeCCCceEEEEEEeCCCCCCCCCCCCceeEEEEEEccccc
Q 001830 624 ADTYCVAKYGHKWV-RTRTIINS--LSAKYNEQYTWEVYDPATVLTVGVFDNSHIGGSSGSKDVKIGKVRIRISTLE 697 (1008)
Q Consensus 624 ~dpyv~~~~~~~~~-~T~~~~~~--~nP~wne~f~~~v~~~~~~l~i~V~d~~~~~~~~~~~d~~lG~~~i~l~~l~ 697 (1008)
..-|++|.++++.+ +|+...-+ ..-.|||.|.+.|...-..|.|+||.... ..+..|+.+.||+-...
T Consensus 37 ~~~~ikl~~N~k~V~~T~~~~l~~dF~v~f~~~f~v~i~~~Pesi~l~i~E~~~------~~~~~la~v~vpvP~~~ 107 (168)
T PF15625_consen 37 TRYYIKLFFNDKEVSRTRSRPLWSDFRVHFNEIFNVQITRWPESIKLEIYEKSG------LSDRLLAEVFVPVPGST 107 (168)
T ss_pred eeEEEEEEECCEEEEeeeeEecCCCeEEeccCEEEEEEecCCCEEEEEEEEccC------ccceEEEEEEeeCCCCc
Confidence 34788999988754 66655432 34467999999998877789999999864 37999999999987653
No 295
>PF06398 Pex24p: Integral peroxisomal membrane peroxin; InterPro: IPR010482 Peroxisomes play diverse roles in the cell, compartmentalising many activities related to lipid metabolism and functioning in the decomposition of toxic hydrogen peroxide. Sequence similarity was identified between two hypothetical proteins and the peroxin integral membrane protein Pex24p [].
Probab=72.30 E-value=8.7 Score=43.39 Aligned_cols=47 Identities=17% Similarity=0.424 Sum_probs=33.1
Q ss_pred HHhhHHHHHHHHHHHH---HHHHhccccCChhhHHHHHHHHHHHHHHHHH
Q 001830 919 VAGRIQTVVGDVATQG---ERIQALLSWRDPRAAAIFVIFCLVAAVVLYV 965 (1008)
Q Consensus 919 ~~~~vq~~l~~~a~~~---e~~~~l~~w~~p~~t~~~~~~~~~~~~~~~~ 965 (1008)
...++-..|+.+-.++ +++.++++|++|..|..+++++..+++..++
T Consensus 11 n~~~l~~~l~~~f~~~~~~d~vl~il~W~~p~~t~~~L~l~t~~~l~p~l 60 (359)
T PF06398_consen 11 NFPRLSSRLGPIFPFQLILDRVLRILTWTNPDYTLSFLLLYTFLCLNPYL 60 (359)
T ss_pred ChHHHHHHHHHhhHHHHHHHHHHHeEEeCCCCcchHHHHHHHHHHHHHHH
Confidence 3445666677777777 9999999999999877665555555554333
No 296
>PF08151 FerI: FerI (NUC094) domain; InterPro: IPR012968 The ferlin gene family are characterised by multiple tandem C2 domains and a C-terminal transmembrane domain. They are found in a wide range of species and their function remains unknown, however, mutations in its two most well-characterised members, dysferlin and otoferlin, have been implicated in human disease []. This domain is present in proteins of the Ferlin family, which includes Otoferlin, Myoferlin and Dysferlin. It is often located between two C2 domains [].
Probab=70.37 E-value=9.5 Score=31.49 Aligned_cols=46 Identities=26% Similarity=0.301 Sum_probs=34.8
Q ss_pred ccccCCCCCCCCCCccEEEEeecCCCCc--cceEEEEEEEEeccCCCcCC
Q 001830 357 LNEVPTRVPPDSPLAAEWYRLEDRKGEK--KKGELMLAVWYGTQADEAFP 404 (1008)
Q Consensus 357 l~~l~~~~~~~~~~~~~w~~L~~~~~~~--~~G~i~l~~~~~~~~~~~~~ 404 (1008)
+..+.. ++++...++|..|.++...+ .+|++.+++.....+|+...
T Consensus 3 lgtVY~--qP~H~~~~KW~~L~dP~D~~~G~kGYlKv~i~Vlg~GD~~~~ 50 (72)
T PF08151_consen 3 LGTVYN--QPDHQFYRKWALLTDPDDTSAGVKGYLKVDISVLGPGDEPPV 50 (72)
T ss_pred eeeeec--CCCCeeEeceEEecCCCCCccCCceEEEEEEEEEcCCCcCCC
Confidence 344443 36788999999999887544 78999999998888776443
No 297
>cd08696 C2_Dock-C C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-C is one of 4 classes of Dock family proteins. The members here include: Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3. Dock-C members are GEFs for both Rac and Cdc42. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-C members contain a functionally uncharacterized domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strand
Probab=69.80 E-value=23 Score=35.20 Aligned_cols=61 Identities=13% Similarity=0.112 Sum_probs=42.9
Q ss_pred EEEEeeeecCCCCcccccEEEEEeeCC---CceEEEEEEeCCCCCCC-CCCCCceeEEEEEEccc
Q 001830 635 KWVRTRTIINSLSAKYNEQYTWEVYDP---ATVLTVGVFDNSHIGGS-SGSKDVKIGKVRIRIST 695 (1008)
Q Consensus 635 ~~~~T~~~~~~~nP~wne~f~~~v~~~---~~~l~i~V~d~~~~~~~-~~~~d~~lG~~~i~l~~ 695 (1008)
..+.|.+...+.+|.|+|++.+.++-. ..-|.|+.++.+.-... .......+|.+.+||-+
T Consensus 54 ~~~~S~V~yHnk~P~f~DEiKi~LP~~l~~~hHLlFtF~Hvs~~~k~~~~~~e~~~Gys~lPL~~ 118 (179)
T cd08696 54 TEAYTAVTYHNKSPDFYDEIKIKLPADLTDNHHLLFTFYHISCQKKQEGGSVETPIGYTWLPLLR 118 (179)
T ss_pred eeEEEEEEEeCCCCcccceEEEEcCCCCCCCeEEEEEEEEeeccccccCCCccceEEEEEEeeec
Confidence 457888889999999999999988743 34699999986542200 11224568888888753
No 298
>KOG0694 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=68.54 E-value=1.4 Score=51.56 Aligned_cols=95 Identities=15% Similarity=0.070 Sum_probs=60.2
Q ss_pred CCCcEEEEEECCee-eccccCCCCCCCeeeeEEEEEecCCCCCCCceEEEEEEeCCCCCCCCCeeEEEEEeCcccCCCCC
Q 001830 24 SSNAFVELHFDGQK-FRTTTKEKDLTPVWNESFYFNISDPHNLSNLALDAYVYNHNRTTNSKSFLGKVRLTGTSFVPYSD 102 (1008)
Q Consensus 24 ~~dPyv~v~~~~~~-~~T~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~~~V~d~~~~~~~d~~lG~~~i~l~~l~~~~~ 102 (1008)
..+||+.|.+.-.. ..+.+.+++.+|.|+++|...+... ..+.|.|++.... ..+.+.-.+.+...++.....
T Consensus 27 al~~y~~v~vk~~~~~~~~~~~~~~~~~~~~~F~~~v~~~-----~~~~i~v~~~~~~-~~~~~~a~~~~~~e~~k~~~~ 100 (694)
T KOG0694|consen 27 ALQPYLAVELKVKQGAENMTKVELRIPELRETFHVEVVAG-----GAKNIIVLLKSPD-PKALSEAQLSLQEESQKLLAL 100 (694)
T ss_pred hhhhhheeccceeecccccCCCCCCCchhhhheeeeeecC-----CceEEEEEecCCc-chhhHHHhHHHHHHHHHHHhh
Confidence 46999999997443 5667789999999999999997643 3799999997322 233333333333333332222
Q ss_pred ceeEEEecccCCCCcccceEEEEEEEeec
Q 001830 103 AVVLHYPLEKRSIFSRVKGELGLKVFVTD 131 (1008)
Q Consensus 103 ~~~~~~~L~~~~~~~~~~G~i~~~~~~~~ 131 (1008)
....|..++.. |.+...+.+..
T Consensus 101 ~~~~w~~~~~~-------g~~~~~~~~~~ 122 (694)
T KOG0694|consen 101 EQRLWVLIEEL-------GTLLKPAALTG 122 (694)
T ss_pred hhhhccccccc-------cceeeeecccC
Confidence 33446665543 67776665544
No 299
>cd08679 C2_DOCK180_related C2 domains found in Dedicator Of CytoKinesis 1 (DOCK 180) and related proteins. Dock180 was first identified as an 180kd proto-oncogene product c-Crk-interacting protein involved in actin cytoskeletal changes. It is now known that it has Rac-specific GEF activity, but lacks the conventional Dbl homology (DH) domain. There are 10 additional related proteins that can be divided into four classes based on sequence similarity and domain organization: Dock-A which includes Dock180/Dock1, Dock2, and Dock5; Dock-B which includes Dock3/MOCA (modifier of cell adhesion) and Dock4; Dock-C which includes Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3; and Dock-D, which includes Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Most of members of classes Dock-A and Dock-B are the GEFs specific for Rac. Those of Dock-D are Cdc42-specific GEFs while those of Dock-C are the GEFs for both. All Dock180-related proteins have two common homolo
Probab=62.07 E-value=49 Score=33.01 Aligned_cols=58 Identities=7% Similarity=0.093 Sum_probs=40.3
Q ss_pred EEeeeecCCCCcccccEEEEEeeCC---CceEEEEEEeCCCCCCCCCCCCceeEEEEEEccc
Q 001830 637 VRTRTIINSLSAKYNEQYTWEVYDP---ATVLTVGVFDNSHIGGSSGSKDVKIGKVRIRIST 695 (1008)
Q Consensus 637 ~~T~~~~~~~nP~wne~f~~~v~~~---~~~l~i~V~d~~~~~~~~~~~d~~lG~~~i~l~~ 695 (1008)
++|-+..+ .+|.|+|+|.+.++.. ..-|.+++++...-...+......+|.+.+||-+
T Consensus 55 ~~sv~~~~-k~p~f~deiKi~LP~~l~~~~HLlFtf~hv~~~~~~~~~~~~~~g~a~lpL~~ 115 (178)
T cd08679 55 YTSVVYYH-KNPVFNDEIKIQLPADLTPQHHLLFTFYHVSSKKKQGDKEETPFGYAFLPLMD 115 (178)
T ss_pred EEEEEEcC-CCCCCceeEEEecCCccCCCeEEEEEEEccccccccCCCccceEEEEEEeccc
Confidence 44444444 9999999999988643 4569999998764320012356789999999875
No 300
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=61.14 E-value=22 Score=43.58 Aligned_cols=30 Identities=23% Similarity=0.557 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHH-HHHhhHHHHHHhhhhh
Q 001830 949 AAIFVIFCLVAAVV-LYVTPFQLLALLAGCY 978 (1008)
Q Consensus 949 t~~~~~~~~~~~~~-~~~iP~r~i~l~~g~~ 978 (1008)
|.+|+++.+.+-++ ++|||.+|++|+.-.|
T Consensus 76 ~~~~~~~~~~~d~~~~~~~p~~~~~~~~~~~ 106 (697)
T PF09726_consen 76 SVFFVCIAFTSDLICLFFIPVHWLFFAASTY 106 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 33444444444444 5568999999886444
No 301
>KOG1792 consensus Reticulon [Intracellular trafficking, secretion, and vesicular transport]
Probab=59.47 E-value=36 Score=35.29 Aligned_cols=59 Identities=10% Similarity=0.053 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHhccccCChhhHHHHHHHHHHHHHHHHHhhHHHHHHhhhhhhhcCCCCC
Q 001830 928 GDVATQGERIQALLSWRDPRAAAIFVIFCLVAAVVLYVTPFQLLALLAGCYIMRHPRFR 986 (1008)
Q Consensus 928 ~~~a~~~e~~~~l~~w~~p~~t~~~~~~~~~~~~~~~~iP~r~i~l~~g~~~~~~P~~~ 986 (1008)
..++..+..++.++.=+|+.....+.+.+++.+.+..+.=+-.++.+..+..++=|.+.
T Consensus 131 ~~in~~l~~l~~ia~~~d~~~~lk~~v~lw~lS~vGs~fn~lTll~ig~v~~~TvP~~Y 189 (230)
T KOG1792|consen 131 VEINQALSELRDIALGRDLKDFLKVAVGLWILSYVGSLFNFLTLLYIGLVLLFTVPVLY 189 (230)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccchh
Confidence 35566666777777778989888888888888877655444444444344444445443
No 302
>PTZ00447 apical membrane antigen 1-like protein; Provisional
Probab=59.28 E-value=1.2e+02 Score=32.90 Aligned_cols=111 Identities=14% Similarity=0.244 Sum_probs=76.9
Q ss_pred eEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEEEeeeecCCCCC--eEeeEEEEEeccCCcCeEEEEEEecCCCCCee
Q 001830 272 RYLFVRVVKARDLPSKDVTGSLDPFVEVKVGNYKGITKYYEKKQNP--EWNEVFAFSRERIQSSVLEVAVKDKDVVKDDY 349 (1008)
Q Consensus 272 ~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~~~~~t~nP--~w~e~f~f~~~~~~~~~l~i~V~d~d~~~d~~ 349 (1008)
-.|-|.|.+..++.. ...-|+.++.|....+|..+.-+..- .-.+.....+... ...|++.|+-..+.+..-
T Consensus 58 F~LLVeI~EI~~i~k-----~khiyIef~~Gr~d~TT~~IpTsKK~RI~IqqRV~IkIRQc-DnTLkI~lfKKkLvkk~h 131 (508)
T PTZ00447 58 FYLLVKINEIFNINK-----YKHIYIIFSTDKYDFTTDEIPTNKKNRIHIDQRVDIKIRQC-DETLRVDLFTTKLTKKVH 131 (508)
T ss_pred eeEEEEehhhhcccc-----ceeEEEEEEcCceEEEccccccCcCceEEEeeeeeeeeeec-CceEEEEEEeccccceeE
Confidence 357788887766643 35789999999988888655433332 3345566666554 368999999998888999
Q ss_pred eEEEEEEccc-cCCCCCCCCCCccEEEEeecCCCCccceEEEEEEE
Q 001830 350 VGLVRFDLNE-VPTRVPPDSPLAAEWYRLEDRKGEKKKGELMLAVW 394 (1008)
Q Consensus 350 lG~~~i~l~~-l~~~~~~~~~~~~~w~~L~~~~~~~~~G~i~l~~~ 394 (1008)
||.+.+++.. +... .-...+||.+.... ...+.|.||+.
T Consensus 132 IgdI~InIn~dIIdk----~FPKnkWy~c~kDG--q~~cRIqLSFh 171 (508)
T PTZ00447 132 IGQIKIDINASVISK----SFPKNEWFVCFKDG--QEICKVQMSFY 171 (508)
T ss_pred EEEEEecccHHHHhc----cCCccceEEEecCC--ceeeeEEEEeh
Confidence 9999999874 3332 13357999995432 24588888874
No 303
>TIGR02302 aProt_lowcomp conserved hypothetical protein TIGR02302. Members of this family are long (~850 residue) bacterial proteins from the alpha Proteobacteria. Each has 2-3 predicted transmembrane helices near the N-terminus and a long C-terminal region that includes stretches of Gln/Gly-rich low complexity sequence, predicted by TMHMM to be outside the membrane. In Bradyrhizobium japonicum, two tandem reading frames are together homologous the single members found in other species; the cutoffs scores are set low enough that the longer scores above the trusted cutoff and the shorter above the noise cutoff for this model.
Probab=58.07 E-value=96 Score=38.83 Aligned_cols=25 Identities=32% Similarity=0.375 Sum_probs=18.7
Q ss_pred cccCChhhHHHHHHHHHHHHHHHHH
Q 001830 941 LSWRDPRAAAIFVIFCLVAAVVLYV 965 (1008)
Q Consensus 941 ~~w~~p~~t~~~~~~~~~~~~~~~~ 965 (1008)
+..+||++...++++++++++++..
T Consensus 133 ~a~~DP~aLR~~~~l~lv~a~~~a~ 157 (851)
T TIGR02302 133 LPIHDPWGLRALVVLLLVAAFAYSG 157 (851)
T ss_pred ccccCcHHHHHHHHHHHHHHHHHhC
Confidence 4569999998877777777775443
No 304
>cd08697 C2_Dock-D C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-D is one of 4 classes of Dock family proteins. The members here include: Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Dock-D are Cdc42-specific GEFs. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-D members contain a functionally uncharacterized domain and a PH domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The PH domain broadly binds to phospholipids and is thought to be involved in targeting the plasma membrane. The C2 domain was first identified in PKC. C2 domains fold into an 8-stande
Probab=54.06 E-value=65 Score=32.24 Aligned_cols=61 Identities=7% Similarity=0.066 Sum_probs=43.2
Q ss_pred EEEEeeeecCCCCcccccEEEEEeeCC---CceEEEEEEeCCCCCCC----CCCCCceeEEEEEEccc
Q 001830 635 KWVRTRTIINSLSAKYNEQYTWEVYDP---ATVLTVGVFDNSHIGGS----SGSKDVKIGKVRIRIST 695 (1008)
Q Consensus 635 ~~~~T~~~~~~~nP~wne~f~~~v~~~---~~~l~i~V~d~~~~~~~----~~~~d~~lG~~~i~l~~ 695 (1008)
..+.|.+...+.+|.|+|++.+.++-. ..-|.|+.++.+.-... .......+|.+.+||-.
T Consensus 56 ~~~~s~V~yh~k~P~f~dEiKI~LP~~l~~~hHLlFtFyHvsc~~~~k~~~~~~~e~~~Gys~lPLl~ 123 (185)
T cd08697 56 TSAYAAVLHHNQNPEFYDEIKIELPTQLHEKHHLLFTFYHVSCDINKKGKKKDGVETPVGYAWLPLLK 123 (185)
T ss_pred eEEEEEEEEcCCCCccceeEEEecCCcCCCCeeEEEEEEeeccccccccccCCCccceEEEEEEeeec
Confidence 467888999999999999999988743 44699999987632100 11224568888888765
No 305
>cd05137 RasGAP_CLA2_BUD2 CLA2/BUD2 functions as a GTPase-activating protein (GAP) for BUD1/RSR1 and is necessary for proper bud-site selection in yeast. BUD2 has sequence similarity to the catalytic domain of RasGAPs, and stimulates the hydrolysis of BUD1-GTP to BUD1-GDP. Elimination of Bud2p activity by mutation causes a random budding pattern with no growth defect. Overproduction of Bud2p also alters the budding pattern.
Probab=53.62 E-value=15 Score=41.62 Aligned_cols=45 Identities=16% Similarity=0.299 Sum_probs=34.3
Q ss_pred eeEEEEEEccc-ccCCCeEEeeEeeeecCCCCCccccEEEEEEEEEec
Q 001830 685 KIGKVRIRIST-LETGRVYTHSYPLLVLHPSGVKKMGELHLAIRFSYT 731 (1008)
Q Consensus 685 ~lG~~~i~l~~-l~~~~~~~~~~~L~~~~~~~~~~~G~i~l~~~f~~~ 731 (1008)
.+|++.|++.. +..+...+.|||+........ ..|.+ +.++++..
T Consensus 1 ~~G~v~i~~~~~~~~~~~~e~w~~i~~~~~~~~-~~~~l-lk~~~~~~ 46 (395)
T cd05137 1 LVGRIDITLEMILDRGLDKETWLPIFDVDNKSV-GEGLI-IKVSSEEN 46 (395)
T ss_pred CeeEEEeehhhhccCCCCceeeeccccCCCCCc-CcceE-EEEEeeec
Confidence 48999999999 778888899999987655443 33777 67776543
No 306
>cd08679 C2_DOCK180_related C2 domains found in Dedicator Of CytoKinesis 1 (DOCK 180) and related proteins. Dock180 was first identified as an 180kd proto-oncogene product c-Crk-interacting protein involved in actin cytoskeletal changes. It is now known that it has Rac-specific GEF activity, but lacks the conventional Dbl homology (DH) domain. There are 10 additional related proteins that can be divided into four classes based on sequence similarity and domain organization: Dock-A which includes Dock180/Dock1, Dock2, and Dock5; Dock-B which includes Dock3/MOCA (modifier of cell adhesion) and Dock4; Dock-C which includes Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3; and Dock-D, which includes Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Most of members of classes Dock-A and Dock-B are the GEFs specific for Rac. Those of Dock-D are Cdc42-specific GEFs while those of Dock-C are the GEFs for both. All Dock180-related proteins have two common homolo
Probab=53.51 E-value=29 Score=34.67 Aligned_cols=53 Identities=19% Similarity=0.248 Sum_probs=36.1
Q ss_pred cccCCCCCCCeeeeEEEEEecCCCCC-CCceEEEEEEeCCCCC----CCCCeeEEEEEeC
Q 001830 40 TTTKEKDLTPVWNESFYFNISDPHNL-SNLALDAYVYNHNRTT----NSKSFLGKVRLTG 94 (1008)
Q Consensus 40 T~~~~~t~nP~Wne~f~f~v~~~~~~-~~~~l~~~V~d~~~~~----~~d~~lG~~~i~l 94 (1008)
|.++....+|.|+|+|.+.+ |..+ ....|.|.++|..... .....+|-+.+||
T Consensus 56 ~sv~~~~k~p~f~deiKi~L--P~~l~~~~HLlFtf~hv~~~~~~~~~~~~~~g~a~lpL 113 (178)
T cd08679 56 TSVVYYHKNPVFNDEIKIQL--PADLTPQHHLLFTFYHVSSKKKQGDKEETPFGYAFLPL 113 (178)
T ss_pred EEEEEcCCCCCCceeEEEec--CCccCCCeEEEEEEEccccccccCCCccceEEEEEEec
Confidence 33444448999999999998 3344 5678999999975332 1245677776664
No 307
>PTZ00447 apical membrane antigen 1-like protein; Provisional
Probab=52.37 E-value=1.6e+02 Score=31.80 Aligned_cols=109 Identities=14% Similarity=0.179 Sum_probs=74.5
Q ss_pred eEEEEEEEeecCCCCCccCCCCCCCCeEEEEEECCEEEEeeeecCCCCc--ccccEEEEEeeCCCceEEEEEEeCCCCCC
Q 001830 600 GVLELGILNADGLHPMKTRDGRGTADTYCVAKYGHKWVRTRTIINSLSA--KYNEQYTWEVYDPATVLTVGVFDNSHIGG 677 (1008)
Q Consensus 600 g~L~v~v~~a~~L~~~~~~~~~g~~dpyv~~~~~~~~~~T~~~~~~~nP--~wne~f~~~v~~~~~~l~i~V~d~~~~~~ 677 (1008)
-.|-|.|.+-.++.. ....|+.+..|...++|..+.-+..- .-.++..+.|...+..|.|.||-....
T Consensus 58 F~LLVeI~EI~~i~k--------~khiyIef~~Gr~d~TT~~IpTsKK~RI~IqqRV~IkIRQcDnTLkI~lfKKkLv-- 127 (508)
T PTZ00447 58 FYLLVKINEIFNINK--------YKHIYIIFSTDKYDFTTDEIPTNKKNRIHIDQRVDIKIRQCDETLRVDLFTTKLT-- 127 (508)
T ss_pred eeEEEEehhhhcccc--------ceeEEEEEEcCceEEEccccccCcCceEEEeeeeeeeeeecCceEEEEEEecccc--
Confidence 456677766666552 34689999999999988666433221 345666777777888999999987543
Q ss_pred CCCCCCceeEEEEEEccc-c-cCCCeEEeeEeeeecCCCCCccccEEEEEE
Q 001830 678 SSGSKDVKIGKVRIRIST-L-ETGRVYTHSYPLLVLHPSGVKKMGELHLAI 726 (1008)
Q Consensus 678 ~~~~~d~~lG~~~i~l~~-l-~~~~~~~~~~~L~~~~~~~~~~~G~i~l~~ 726 (1008)
+...||.+.|.+.. + ...-+-..||-+.. .|. ..++|.|++
T Consensus 128 ----kk~hIgdI~InIn~dIIdk~FPKnkWy~c~k---DGq-~~cRIqLSF 170 (508)
T PTZ00447 128 ----KKVHIGQIKIDINASVISKSFPKNEWFVCFK---DGQ-EICKVQMSF 170 (508)
T ss_pred ----ceeEEEEEEecccHHHHhccCCccceEEEec---CCc-eeeeEEEEe
Confidence 58999999999876 3 33334568999942 222 236666654
No 308
>PF07162 B9-C2: Ciliary basal body-associated, B9 protein; InterPro: IPR010796 Proteins in this entry include the MSK1 protein (Q9NXB0 from SWISSPROT) and other known or predicted flagellar basal body proteome components [] or cilia-containing species. Although the function is unknown, a cilia-specific role has been suggested for the poorly characterised B9 domain [, , ]. Mutations in MSK1 have been shown to cause Meckel syndrome type 1, a severe foetal development disorder that has been reported in most populations.
Probab=49.45 E-value=2.6e+02 Score=27.49 Aligned_cols=82 Identities=15% Similarity=0.048 Sum_probs=56.4
Q ss_pred EEEEEEEeeCCCCCCCCCCCCcEEEEEEC----------Ce-eeccccCCCC-----CCCeeeeEEEEEecCCCCCCCce
Q 001830 6 LGVEVVSAYELMPKDGQGSSNAFVELHFD----------GQ-KFRTTTKEKD-----LTPVWNESFYFNISDPHNLSNLA 69 (1008)
Q Consensus 6 L~V~v~~a~~L~~~d~~g~~dPyv~v~~~----------~~-~~~T~~~~~t-----~nP~Wne~f~f~v~~~~~~~~~~ 69 (1008)
+.=.|.+|.+.. ..+-||+-.+. .. ...|.+.+.+ ..-.||.-|.+.+.......-..
T Consensus 4 v~G~I~~a~~f~------~~~l~~~y~~~~g~~W~~~~g~~~~G~Tq~~~~~~~~~~~~~~f~~P~d~~~~~~~~~gwP~ 77 (168)
T PF07162_consen 4 VIGEIESAEGFE------EDNLYCRYQLVHGPDWKLISGLSLEGQTQISKSSSYGNDDVAVFNHPFDLHFKSTNPQGWPQ 77 (168)
T ss_pred EEEEEEEEECCC------CCCEEEEEEEEeCCCeEECCCCcceEEcceeecCcccCCCceEEeccEEEEEEeCCCCCCce
Confidence 344688888654 35778887762 23 4667665433 34689999888866544334468
Q ss_pred EEEEEEeCCCCCCCCCeeEEEEEeC
Q 001830 70 LDAYVYNHNRTTNSKSFLGKVRLTG 94 (1008)
Q Consensus 70 l~~~V~d~~~~~~~d~~lG~~~i~l 94 (1008)
|.|+||..|..+ ++...|-..+.|
T Consensus 78 L~l~V~~~D~~g-r~~~~GYG~~~l 101 (168)
T PF07162_consen 78 LVLQVYSLDSWG-RDRVEGYGFCHL 101 (168)
T ss_pred EEEEEEEEcccC-CeEEeEEeEEEe
Confidence 999999998876 688888877763
No 309
>cd08696 C2_Dock-C C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-C is one of 4 classes of Dock family proteins. The members here include: Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3. Dock-C members are GEFs for both Rac and Cdc42. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-C members contain a functionally uncharacterized domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strand
Probab=46.96 E-value=66 Score=32.05 Aligned_cols=40 Identities=8% Similarity=0.088 Sum_probs=32.0
Q ss_pred eEEEeeeecCCCCCeEeeEEEEEe--ccCCcCeEEEEEEecC
Q 001830 304 YKGITKYYEKKQNPEWNEVFAFSR--ERIQSSVLEVAVKDKD 343 (1008)
Q Consensus 304 ~~~kT~~~~~t~nP~w~e~f~f~~--~~~~~~~l~i~V~d~d 343 (1008)
....|.|..++.+|.|+|++-..+ .......|.|+.++.+
T Consensus 54 ~~~~S~V~yHnk~P~f~DEiKi~LP~~l~~~hHLlFtF~Hvs 95 (179)
T cd08696 54 TEAYTAVTYHNKSPDFYDEIKIKLPADLTDNHHLLFTFYHIS 95 (179)
T ss_pred eeEEEEEEEeCCCCcccceEEEEcCCCCCCCeEEEEEEEEee
Confidence 356788999999999999998875 3334568999999865
No 310
>KOG1329 consensus Phospholipase D1 [Lipid transport and metabolism]
Probab=46.75 E-value=43 Score=41.13 Aligned_cols=85 Identities=16% Similarity=0.227 Sum_probs=65.8
Q ss_pred CCcEEEEEECCe-EEEeeeecCC-CCCeEeeEEEEEeccCCcCeEEEEEEecCC-CCCeeeEEEEEEccccCCCCCCCCC
Q 001830 293 LDPFVEVKVGNY-KGITKYYEKK-QNPEWNEVFAFSRERIQSSVLEVAVKDKDV-VKDDYVGLVRFDLNEVPTRVPPDSP 369 (1008)
Q Consensus 293 ~dpyv~v~~~~~-~~kT~~~~~t-~nP~w~e~f~f~~~~~~~~~l~i~V~d~d~-~~d~~lG~~~i~l~~l~~~~~~~~~ 369 (1008)
.++|+.+.+... -.+|..+.+. .+|.|.+.|........ ..+.++|.+.+. +....+|.+.+++..+..+ .
T Consensus 138 ~e~Ylt~~l~~~~~~~t~~~~~f~e~s~~~f~~~~~~~h~~-g~v~~~~~~~~~~G~s~~w~~v~~s~~~~~~~-----~ 211 (887)
T KOG1329|consen 138 LENYLTVVLHKARYRRTHVIYEFLENSRWSFSFDIGFAHKA-GYVIFRVKGARVPGWSKRWGRVKISFLQYCSG-----H 211 (887)
T ss_pred ccchheeeechhhhhchhhhhcccccchhhhhccccccccc-cEEEEeecCCccccceeEEEEeccchhhhhcc-----c
Confidence 488999888764 3466666665 88999999987776664 578999999884 5589999999999999875 4
Q ss_pred CccEEEEeecCCCC
Q 001830 370 LAAEWYRLEDRKGE 383 (1008)
Q Consensus 370 ~~~~w~~L~~~~~~ 383 (1008)
....|+++....+.
T Consensus 212 ~~~~~~~Il~~d~~ 225 (887)
T KOG1329|consen 212 RIGGWFPILDNDGK 225 (887)
T ss_pred cccceeeeeccCCc
Confidence 56788888766543
No 311
>PF14909 SPATA6: Spermatogenesis-assoc protein 6
Probab=45.49 E-value=1.3e+02 Score=28.44 Aligned_cols=86 Identities=9% Similarity=0.050 Sum_probs=60.7
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECCeEEEeeeecCCCCCeEeeEEEEEe------------ccCCcCeEEEEEEe
Q 001830 274 LFVRVVKARDLPSKDVTGSLDPFVEVKVGNYKGITKYYEKKQNPEWNEVFAFSR------------ERIQSSVLEVAVKD 341 (1008)
Q Consensus 274 L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~~~~~t~nP~w~e~f~f~~------------~~~~~~~l~i~V~d 341 (1008)
|+|+-+.|-|.-.. ..-|-|..|++.++-++|+.....-==.++|.|.|.- ..+..+.+.|+++.
T Consensus 4 L~i~aVTCPGv~L~---~~~~vyL~v~~lg~~~~T~~~ppvFPllfhek~~FeK~F~~~~dp~~l~~~Le~e~~~iELiQ 80 (140)
T PF14909_consen 4 LEIHAVTCPGVWLC---DKGDVYLSVCILGQYKRTRCLPPVFPLLFHEKFRFEKVFPNAVDPAQLADLLEDETVYIELIQ 80 (140)
T ss_pred EEEEEEecCCeEeC---CCCCEEEEEEEcccEeecccCCCcCCeeEeeEEEeEEEecCCCCHHHHHHHhhcCcEEEEEEE
Confidence 55555556554322 2348999999999999998654433335789999962 23456789999998
Q ss_pred cCCCCCeeeEEEEEEccccCC
Q 001830 342 KDVVKDDYVGLVRFDLNEVPT 362 (1008)
Q Consensus 342 ~d~~~d~~lG~~~i~l~~l~~ 362 (1008)
......+.|+...-++.++..
T Consensus 81 l~~~~g~iLA~ye~n~rDfLf 101 (140)
T PF14909_consen 81 LVPPAGEILAYYEENTRDFLF 101 (140)
T ss_pred EeCCCCcEEEEEeccccceEc
Confidence 764347888888888888875
No 312
>PF04842 DUF639: Plant protein of unknown function (DUF639); InterPro: IPR006927 The sequences in this family are plant proteins of unknown function.
Probab=45.25 E-value=35 Score=40.73 Aligned_cols=62 Identities=19% Similarity=0.274 Sum_probs=41.7
Q ss_pred hhHHHHHHHHHHHHHHHHhccccCChhhHHHHHHHHHHHH---HHHHHhhHHHHHHhhhhhhhcC
Q 001830 921 GRIQTVVGDVATQGERIQALLSWRDPRAAAIFVIFCLVAA---VVLYVTPFQLLALLAGCYIMRH 982 (1008)
Q Consensus 921 ~~vq~~l~~~a~~~e~~~~l~~w~~p~~t~~~~~~~~~~~---~~~~~iP~r~i~l~~g~~~~~~ 982 (1008)
.-++.+|--+..++.+++.+..|.+|..|..|+++.+.+. .+.|++|.-+++++.+..+.||
T Consensus 490 av~kELL~Pl~~i~~~~~~l~~We~P~kt~~Fl~~~~~iI~r~wl~Y~~p~~Ll~~a~~Ml~~r~ 554 (683)
T PF04842_consen 490 AVMKELLFPLIEIAKWLQKLASWEEPLKTLVFLALFLYIIYRGWLGYIFPAFLLFSAVFMLWLRY 554 (683)
T ss_pred HHHHhccccHHHHHHHHHHHhhccCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3345556667788899999999999999976554444332 3567788766666555444444
No 313
>cd08697 C2_Dock-D C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-D is one of 4 classes of Dock family proteins. The members here include: Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Dock-D are Cdc42-specific GEFs. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-D members contain a functionally uncharacterized domain and a PH domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The PH domain broadly binds to phospholipids and is thought to be involved in targeting the plasma membrane. The C2 domain was first identified in PKC. C2 domains fold into an 8-stande
Probab=44.77 E-value=52 Score=32.95 Aligned_cols=41 Identities=7% Similarity=0.087 Sum_probs=32.4
Q ss_pred eeccccCCCCCCCeeeeEEEEEecCCCCCCCceEEEEEEeCC
Q 001830 37 KFRTTTKEKDLTPVWNESFYFNISDPHNLSNLALDAYVYNHN 78 (1008)
Q Consensus 37 ~~~T~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~~~V~d~~ 78 (1008)
...|.+...+.+|.|+|++-+.+.- .......|.|+.++..
T Consensus 57 ~~~s~V~yh~k~P~f~dEiKI~LP~-~l~~~hHLlFtFyHvs 97 (185)
T cd08697 57 SAYAAVLHHNQNPEFYDEIKIELPT-QLHEKHHLLFTFYHVS 97 (185)
T ss_pred EEEEEEEEcCCCCccceeEEEecCC-cCCCCeeEEEEEEeec
Confidence 4678888999999999999998732 2234568999999975
No 314
>KOG0904 consensus Phosphatidylinositol 3-kinase catalytic subunit (p110) [Signal transduction mechanisms]
Probab=44.21 E-value=45 Score=40.64 Aligned_cols=71 Identities=15% Similarity=0.104 Sum_probs=49.4
Q ss_pred ceEEEEEEEeeCCCCCCCCCCCCcEEEEEEC----Ce----eeccccCCCCCCCeeeeEEEEEecCCCCCCCceEEEEEE
Q 001830 4 LKLGVEVVSAYELMPKDGQGSSNAFVELHFD----GQ----KFRTTTKEKDLTPVWNESFYFNISDPHNLSNLALDAYVY 75 (1008)
Q Consensus 4 ~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~----~~----~~~T~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~~~V~ 75 (1008)
+.++|+++++.++-. ..+.|-+|.|..+ ++ ...|.-+..+.+|.||+...|++.-.+-.....|-|.||
T Consensus 343 ~~frI~l~~is~~n~---~~t~~~kV~V~~~lyhG~e~Lc~~~sTs~v~~~~~~~Wn~~leFDI~i~DLPr~ArLc~~i~ 419 (1076)
T KOG0904|consen 343 RPFRIKLVGISKVNL---PETVDLKVFVEAGLYHGTEVLCKTRSTSEVPGCSFPLWNEWLEFDIYIKDLPRMARLCLAIY 419 (1076)
T ss_pred CceEEEEeeccccCC---CcccceEEEEEEEEEECCeehhcccccCCCCCccchhccceeEeeeecCCCChhhhheeeee
Confidence 567888888876643 2355777777764 33 255666666889999999999976555444557888887
Q ss_pred eC
Q 001830 76 NH 77 (1008)
Q Consensus 76 d~ 77 (1008)
--
T Consensus 420 ~v 421 (1076)
T KOG0904|consen 420 AV 421 (1076)
T ss_pred Ee
Confidence 75
No 315
>KOG2419 consensus Phosphatidylserine decarboxylase [Lipid transport and metabolism]
Probab=43.18 E-value=5.4 Score=45.99 Aligned_cols=78 Identities=17% Similarity=0.098 Sum_probs=49.7
Q ss_pred eEEEEEEEEeecCCCCC----CCCCCCcEEEEEECCEEEEeeeccCCCCCCcccceeEEEeeCCCCCcEEEEEEeccCCC
Q 001830 436 WYVRVNVMEAQDLVISD----KNRFPDAYVKVQIGNQVLKTKSVQSRTLNPVWNEDMMFVASEPFEDHLILTVEDRVGPN 511 (1008)
Q Consensus 436 ~~L~v~v~~a~~L~~~d----~~g~~dpyv~v~l~~~~~kT~~v~~~~~nP~w~e~f~f~v~~~~~~~l~i~v~d~d~~~ 511 (1008)
|....+++.|.++++.. ..-..++++...++.+..+|+.. ..+.+|.|||. .+...+.... ..-
T Consensus 280 gi~ll~lI~a~~~~~i~~~~~~~f~~~~~~itsf~~~~frt~~~-~~~e~piyNe~-~~E~~~Fqsn----------~~l 347 (975)
T KOG2419|consen 280 GIALLTLIGAEMKYDIVEDVAKLFKDKWLAITSFGEQTFRTEIS-DDTEKPIYNED-EREDSDFQSN----------RYL 347 (975)
T ss_pred hhHHHHHhhhhcccchhhhhhhccCCCchheeecchhhhhhhhh-ccccccccccc-ccccccchhh----------HHH
Confidence 34444555666654321 12346889999999999999976 59999999997 5555433221 111
Q ss_pred CCceeEEEEEeCcc
Q 001830 512 KDETIGKVVIPLHS 525 (1008)
Q Consensus 512 ~d~~lG~~~i~l~~ 525 (1008)
....+|.+++++.+
T Consensus 348 ~~kiv~~~~~~lnd 361 (975)
T KOG2419|consen 348 GNKIVGYCELDLND 361 (975)
T ss_pred hhhccccccccccc
Confidence 34566777777765
No 316
>PF07162 B9-C2: Ciliary basal body-associated, B9 protein; InterPro: IPR010796 Proteins in this entry include the MSK1 protein (Q9NXB0 from SWISSPROT) and other known or predicted flagellar basal body proteome components [] or cilia-containing species. Although the function is unknown, a cilia-specific role has been suggested for the poorly characterised B9 domain [, , ]. Mutations in MSK1 have been shown to cause Meckel syndrome type 1, a severe foetal development disorder that has been reported in most populations.
Probab=38.79 E-value=3e+02 Score=27.07 Aligned_cols=78 Identities=18% Similarity=0.203 Sum_probs=53.4
Q ss_pred EEEEEeecCCCCCccCCCCCCCCeEEEEEE--CCE---------EEEeeeecC-----CCCcccccEEEEEeeCC----C
Q 001830 603 ELGILNADGLHPMKTRDGRGTADTYCVAKY--GHK---------WVRTRTIIN-----SLSAKYNEQYTWEVYDP----A 662 (1008)
Q Consensus 603 ~v~v~~a~~L~~~~~~~~~g~~dpyv~~~~--~~~---------~~~T~~~~~-----~~nP~wne~f~~~v~~~----~ 662 (1008)
.-.|.+|.+.. ..+-||+-.+ |.. ...|.+.+. ...-.||.-|++..... -
T Consensus 5 ~G~I~~a~~f~---------~~~l~~~y~~~~g~~W~~~~g~~~~G~Tq~~~~~~~~~~~~~~f~~P~d~~~~~~~~~gw 75 (168)
T PF07162_consen 5 IGEIESAEGFE---------EDNLYCRYQLVHGPDWKLISGLSLEGQTQISKSSSYGNDDVAVFNHPFDLHFKSTNPQGW 75 (168)
T ss_pred EEEEEEEECCC---------CCCEEEEEEEEeCCCeEECCCCcceEEcceeecCcccCCCceEEeccEEEEEEeCCCCCC
Confidence 34567888665 3357888543 433 346666642 34567998888776533 3
Q ss_pred ceEEEEEEeCCCCCCCCCCCCceeEEEEEEcc
Q 001830 663 TVLTVGVFDNSHIGGSSGSKDVKIGKVRIRIS 694 (1008)
Q Consensus 663 ~~l~i~V~d~~~~~~~~~~~d~~lG~~~i~l~ 694 (1008)
..|.|+||..|.++ ++.+.|...+.|-
T Consensus 76 P~L~l~V~~~D~~g-----r~~~~GYG~~~lP 102 (168)
T PF07162_consen 76 PQLVLQVYSLDSWG-----RDRVEGYGFCHLP 102 (168)
T ss_pred ceEEEEEEEEcccC-----CeEEeEEeEEEeC
Confidence 57999999999888 8899888877764
No 317
>KOG4027 consensus Uncharacterized conserved protein [Function unknown]
Probab=36.78 E-value=1.9e+02 Score=27.69 Aligned_cols=70 Identities=13% Similarity=0.047 Sum_probs=47.5
Q ss_pred CCCcEEEEEEC---------C-e---eeccccCCCCCCC-eeeeEEEEEecCCCCCCCceEEEEEEeCCCCCCCCCeeEE
Q 001830 24 SSNAFVELHFD---------G-Q---KFRTTTKEKDLTP-VWNESFYFNISDPHNLSNLALDAYVYNHNRTTNSKSFLGK 89 (1008)
Q Consensus 24 ~~dPyv~v~~~---------~-~---~~~T~~~~~t~nP-~Wne~f~f~v~~~~~~~~~~l~~~V~d~~~~~~~d~~lG~ 89 (1008)
.+|-||+..+- | + .+-|...++-.|| +||-.++..++...-..-..|.+.||..|.++ +|..+|-
T Consensus 25 ~~dv~~ky~~Vag~DW~~~~Gpqegvsq~s~~~r~~~~~iv~n~Pievt~KstsPygWPqivl~vfg~d~~G-~d~v~GY 103 (187)
T KOG4027|consen 25 ESDVCVKYSTVAGGDWKIINGPQEGVSQSSFSFRGADNQIVINLPIEVTLKSTSPYGWPQIVLNVFGKDHSG-KDCVTGY 103 (187)
T ss_pred CCceEEEEEEEecCCceeccCcccchhhheeccccCCCceEEecceEEEeccCCCCCCceEEEEEecCCcCC-cceeeee
Confidence 56888887651 1 1 2223233344455 67877777766545556668999999998775 8999999
Q ss_pred EEEeC
Q 001830 90 VRLTG 94 (1008)
Q Consensus 90 ~~i~l 94 (1008)
..+.+
T Consensus 104 g~~hi 108 (187)
T KOG4027|consen 104 GMLHI 108 (187)
T ss_pred eeEec
Confidence 98874
No 318
>PF14924 DUF4497: Protein of unknown function (DUF4497)
Probab=34.06 E-value=1e+02 Score=27.99 Aligned_cols=63 Identities=21% Similarity=0.206 Sum_probs=41.9
Q ss_pred ceEEEEEEeCCCCCCCCCCCCceeEEEEEEccccc--------------CCCeEEeeEeeeecCCCCCccccEEEEEEEE
Q 001830 663 TVLTVGVFDNSHIGGSSGSKDVKIGKVRIRISTLE--------------TGRVYTHSYPLLVLHPSGVKKMGELHLAIRF 728 (1008)
Q Consensus 663 ~~l~i~V~d~~~~~~~~~~~d~~lG~~~i~l~~l~--------------~~~~~~~~~~L~~~~~~~~~~~G~i~l~~~f 728 (1008)
..|.+.+++-..-. .......||.+.|++.+.. ........|+|.+... . ..|+|.+.+|+
T Consensus 29 ~pl~i~~~~~~~~~--~~~~~~liG~~~i~l~~~~~~i~~~~~~~~~~p~s~~~k~~f~L~~~~~--~-~~G~I~l~iRL 103 (112)
T PF14924_consen 29 FPLYIVVKKVPPGF--PTPPPMLIGSCPISLAEAFNRILKDSAECNGQPSSKTIKGTFPLFDENG--N-PVGEISLYIRL 103 (112)
T ss_pred CceEEEEEecCCCC--CCCccceeeEEEecHHHHHHHHHHHHHhhccCCCchhhcceeEeecCCC--c-eeeeEEEEEEE
Confidence 45778776553200 1236678999999998763 1235667899975433 3 55999999998
Q ss_pred Ee
Q 001830 729 SY 730 (1008)
Q Consensus 729 ~~ 730 (1008)
++
T Consensus 104 sc 105 (112)
T PF14924_consen 104 SC 105 (112)
T ss_pred ec
Confidence 64
No 319
>PF10409 PTEN_C2: C2 domain of PTEN tumour-suppressor protein; InterPro: IPR014020 Tensins constitute an eukaryotic family of lipid phosphatases that are defined by the presence of two adjacent domains: a lipid phosphatase domain and a C2-like domain. The tensin-type C2 domain has a structure similar to the classical C2 domain (see IPR000008 from INTERPRO) that mediates the Ca2+-dependent membrane recruitment of several signalling proteins. However the tensin-type C2 domain lacks two of the three conserved loops that bind Ca2+, and in this respect it is similar to the C2 domains of PKC-type [, ]. The tensin-type C2 domain can bind phopholipid membranes in a Ca2+ independent manner []. In the tumour suppressor protein PTEN, the best characterised member of the family, the lipid phosphatase domain was shown to specifically dephosphorylate the D3 position of the inositol ring of the lipid second messenger, phosphatydilinositol-3-4-5-triphosphate (PIP3). The lipid phosphatase domain contains the signature motif HCXXGXXR present in the active sites of protein tyrosine phosphatases (PTPs) and dual specificity phosphatases (DSPs). Furthermore, two invariant lysines are found only in the tensin-type phosphatase motif (HCKXGKXR) and are suspected to interact with the phosphate group at position D1 and D5 of the inositol ring [, ]. The C2 domain is found at the C terminus of the tumour suppressor protein PTEN (phosphatidyl-inositol triphosphate phosphatase). This domain may include a CBR3 loop, indicating a central role in membrane binding. This domain associates across an extensive interface with the N-terminal phosphatase domain DSPc suggesting that the C2 domain productively positions the catalytic part of the protein on the membrane. The crystal structure of the PTEN tumour suppressor has been solved []. The lipid phosphatase domain has a structure similar to the dual specificity phosphatase (see IPR000387 from INTERPRO). However, PTEN has a larger active site pocket that could be important to accommodate PI(3,4,5)P3. Proteins known to contain a phosphatase and a C2 tensin-type domain are listed below: Tensin, a focal-adhesion molecule that binds to actin filaments. It may be involved in cell migration, cartilage development and in linking signal transduction pathways to the cytoskeleton. Phosphatase and tensin homologue deleted on chromosome 10 protein (PTEN). It antagonizes PI 3-kinase signalling by dephosphorylating the 3-position of the inositol ring of PI(3,4,5)P3 and thus inactivates downstream signalling. It plays major roles both during development and in the adult to control cell size, growth, and survival. Auxilin. It binds clathrin heavy chain and promotes its assembly into regular cages. Cyclin G-associated kinase or auxilin-2. It is a potential regulator of clathrin-mediated membrane trafficking. ; GO: 0005515 protein binding; PDB: 3N0A_A 1D5R_A 3V0D_B 3V0H_B 3V0G_A 3V0F_B 3V0J_A 3V0I_A 3AWE_B 3AWG_C ....
Probab=33.17 E-value=2.6e+02 Score=26.18 Aligned_cols=91 Identities=13% Similarity=0.124 Sum_probs=0.0
Q ss_pred CCCceEEEEEEEeeCCCCCCCCCCCCcEEEEEECCeee-ccccCCCCCCCeeeeEEEEEecCCCCCCCceEEEEEEeCCC
Q 001830 1 MSHLKLGVEVVSAYELMPKDGQGSSNAFVELHFDGQKF-RTTTKEKDLTPVWNESFYFNISDPHNLSNLALDAYVYNHNR 79 (1008)
Q Consensus 1 m~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~~~-~T~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~~~V~d~~~ 79 (1008)
.....|.++=+.-.++|.-+..|.+.||++|+-++... .|........-.=...+.+.+...-.+ ..-+.|++|+.+.
T Consensus 1 ~~~~~l~L~~I~l~~iP~f~~~~gc~p~i~I~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~GDV~i~~~~~~~ 79 (134)
T PF10409_consen 1 PPPRPLFLKSIILHGIPNFNSGGGCRPYIEIYNGGKKVFSTSKSYEDPKSYEQDSVIIELPKNLPL-RGDVLIKFYHKRS 79 (134)
T ss_dssp -S--EEEEEEEEEES-TTSTTSSCCTEEEEEEETTEEEEETCCTCCCCCEEETTCEEEEEEEEEEE-ESEEEEEEEECET
T ss_pred CCCeeEEEEEEEEECCCccCCCCCEEEEEEEECCCccEEEeccceeccccccceeEEEEeCCCCeE-eCCEEEEEEeCCC
Q ss_pred CCCCCCeeEEEEE
Q 001830 80 TTNSKSFLGKVRL 92 (1008)
Q Consensus 80 ~~~~d~~lG~~~i 92 (1008)
....++.+.++.+
T Consensus 80 ~~~~~~~~f~~~F 92 (134)
T PF10409_consen 80 SSMSKEKMFRFWF 92 (134)
T ss_dssp TECCCEEEEEEEE
T ss_pred cccccCeEEEEEE
No 320
>KOG2419 consensus Phosphatidylserine decarboxylase [Lipid transport and metabolism]
Probab=32.52 E-value=13 Score=43.10 Aligned_cols=53 Identities=25% Similarity=0.248 Sum_probs=39.1
Q ss_pred CCCcEEEEEECCeeeccccCCCCCCCeeeeEEEEEecCCCCCCCceEEEEEEeCCC
Q 001830 24 SSNAFVELHFDGQKFRTTTKEKDLTPVWNESFYFNISDPHNLSNLALDAYVYNHNR 79 (1008)
Q Consensus 24 ~~dPyv~v~~~~~~~~T~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~~~V~d~~~ 79 (1008)
..+|++...++.+.++|+.-..+.+|+|||. .|.+.+.+ ....|...|.++++
T Consensus 304 ~~~~~~itsf~~~~frt~~~~~~e~piyNe~-~~E~~~Fq--sn~~l~~kiv~~~~ 356 (975)
T KOG2419|consen 304 KDKWLAITSFGEQTFRTEISDDTEKPIYNED-EREDSDFQ--SNRYLGNKIVGYCE 356 (975)
T ss_pred CCCchheeecchhhhhhhhhccccccccccc-ccccccch--hhHHHhhhcccccc
Confidence 4689999999999999999999999999998 66654322 12345555555544
No 321
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=31.99 E-value=2.6e+02 Score=23.05 Aligned_cols=35 Identities=20% Similarity=0.316 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcccc
Q 001830 909 VRMRYDRLRSVAGRIQTVVGDVATQGERIQALLSW 943 (1008)
Q Consensus 909 ~~~~~~~l~~~~~~vq~~l~~~a~~~e~~~~l~~w 943 (1008)
...+.+.+.......+..+..++..++++.+...|
T Consensus 18 ~~~~i~~lE~~~~~~e~~i~~~~~~l~~I~~n~kW 52 (71)
T PF10779_consen 18 HEERIDKLEKRDAANEKDIKNLNKQLEKIKSNTKW 52 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556666666777788999999999999888
No 322
>PF14909 SPATA6: Spermatogenesis-assoc protein 6
Probab=30.86 E-value=2.3e+02 Score=26.85 Aligned_cols=88 Identities=17% Similarity=0.203 Sum_probs=58.5
Q ss_pred eEEEEEEEeeCCCCCCCCCCCCcEEEEEECCeeeccccCCCCCCCeeeeEEEEEec-----CCC----CCCCceEEEEEE
Q 001830 5 KLGVEVVSAYELMPKDGQGSSNAFVELHFDGQKFRTTTKEKDLTPVWNESFYFNIS-----DPH----NLSNLALDAYVY 75 (1008)
Q Consensus 5 ~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~~~t~nP~Wne~f~f~v~-----~~~----~~~~~~l~~~V~ 75 (1008)
.|+|+-+.|-|.--.+ .-|-|..|++.|+.++|+......==.++|.|.|.-. ++. .+.+..+.|+++
T Consensus 3 eL~i~aVTCPGv~L~~---~~~vyL~v~~lg~~~~T~~~ppvFPllfhek~~FeK~F~~~~dp~~l~~~Le~e~~~iELi 79 (140)
T PF14909_consen 3 ELEIHAVTCPGVWLCD---KGDVYLSVCILGQYKRTRCLPPVFPLLFHEKFRFEKVFPNAVDPAQLADLLEDETVYIELI 79 (140)
T ss_pred EEEEEEEecCCeEeCC---CCCEEEEEEEcccEeecccCCCcCCeeEeeEEEeEEEecCCCCHHHHHHHhhcCcEEEEEE
Confidence 4677778887765444 3488999999999999997654444455999999821 111 124457788887
Q ss_pred eCCCCCCCCCeeEEEEEeCccc
Q 001830 76 NHNRTTNSKSFLGKVRLTGTSF 97 (1008)
Q Consensus 76 d~~~~~~~d~~lG~~~i~l~~l 97 (1008)
...... ...|+...-.+.++
T Consensus 80 Ql~~~~--g~iLA~ye~n~rDf 99 (140)
T PF14909_consen 80 QLVPPA--GEILAYYEENTRDF 99 (140)
T ss_pred EEeCCC--CcEEEEEeccccce
Confidence 764432 45677666666554
No 323
>PF02453 Reticulon: Reticulon; InterPro: IPR003388 Eukaryotic proteins of the reticulon (RTN) family all share an association with the endoplasmic reticulum (ER). Whereas amino-terminal regions are not related to one another, all reticulon proteins share a 200 amino acid residue region of sequence similarity at the C-terminal. This region contains two large hydrophobic regions separated by a 66 residue hydrophilic segment. The conserved hydrophobic C-terminal portion has been shown to play an essential role in the association of reticulons with the ER membrane. The hydrophobic portions are supposed to be membrane-embedded and the hydrophilic 66 residue localized to the lumenal/extracellular face of the membrane. Most reticulons have a di-lysine ER retention motif at the C-terminal. Because of their likely association with the rough as well as the smooth ER, the reticulons might play some role in transport processes or in regulation of intracellular calcium levels. It has been suggested that the reticulons may be serving as ER-associated channel-like complexes [, , , ].; GO: 0005783 endoplasmic reticulum; PDB: 2KO2_A 2JV5_A 2G31_A.
Probab=29.21 E-value=18 Score=35.60 Aligned_cols=25 Identities=32% Similarity=0.555 Sum_probs=0.0
Q ss_pred HHhccccCChhhHHHHHHHHHHHHH
Q 001830 937 IQALLSWRDPRAAAIFVIFCLVAAV 961 (1008)
Q Consensus 937 ~~~l~~w~~p~~t~~~~~~~~~~~~ 961 (1008)
+++++.|+||..|..++.++.++.+
T Consensus 1 V~dll~W~~~~~S~~v~~~~~~~~~ 25 (169)
T PF02453_consen 1 VADLLLWRDPKKSGIVFGAILLFWL 25 (169)
T ss_dssp -------------------------
T ss_pred CceeeEecCCCchHHHHHHHHHHHH
Confidence 4678999999999876665555333
No 324
>KOG0860 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=29.17 E-value=1.7e+02 Score=26.70 Aligned_cols=23 Identities=4% Similarity=0.299 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHhccccCChhhHH
Q 001830 928 GDVATQGERIQALLSWRDPRAAA 950 (1008)
Q Consensus 928 ~~~a~~~e~~~~l~~w~~p~~t~ 950 (1008)
..+-..--+++--+-|++-+...
T Consensus 74 s~F~~~A~klkrk~wWkn~Km~~ 96 (116)
T KOG0860|consen 74 SQFEKTAVKLKRKMWWKNCKMRI 96 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344455567787766554
No 325
>KOG3850 consensus Predicted membrane protein [Function unknown]
Probab=28.32 E-value=1.5e+02 Score=32.63 Aligned_cols=27 Identities=19% Similarity=0.272 Sum_probs=15.9
Q ss_pred cccCChhhHHHHHHHHHHHHHHHHHhh
Q 001830 941 LSWRDPRAAAIFVIFCLVAAVVLYVTP 967 (1008)
Q Consensus 941 ~~w~~p~~t~~~~~~~~~~~~~~~~iP 967 (1008)
+.+-.+.+..+.++++++++|.-++.|
T Consensus 390 gk~iNiiLalm~VlLvfVSTIa~~v~P 416 (455)
T KOG3850|consen 390 GKFINIILALMTVLLVFVSTIANCVSP 416 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccH
Confidence 344555666666666666666655555
No 326
>PF06219 DUF1005: Protein of unknown function (DUF1005); InterPro: IPR010410 This is a family of plant proteins with undetermined function.
Probab=27.44 E-value=2.9e+02 Score=31.17 Aligned_cols=104 Identities=17% Similarity=0.246 Sum_probs=60.5
Q ss_pred CCcEEEEEECCeEEEeeeecC----CCCC-eE---eeEEEEEecc---C--------CcCeEEEEEEecCC-------CC
Q 001830 293 LDPFVEVKVGNYKGITKYYEK----KQNP-EW---NEVFAFSRER---I--------QSSVLEVAVKDKDV-------VK 346 (1008)
Q Consensus 293 ~dpyv~v~~~~~~~kT~~~~~----t~nP-~w---~e~f~f~~~~---~--------~~~~l~i~V~d~d~-------~~ 346 (1008)
+..||+|++.+...+|..+.- ..+| .- -..|.+.-.+ + ....|+|.||.-.. .+
T Consensus 36 spCfC~IrL~~fP~Qta~vPLi~~~~~~~p~~~~~Aa~F~Ld~s~l~~l~~~~~f~~~~~~L~i~VY~Gr~G~tCGv~~~ 115 (460)
T PF06219_consen 36 SPCFCEIRLKGFPSQTAPVPLISSSEPEPPDSHSLAASFHLDKSDLRRLLAKPCFYSPRPCLEISVYTGRRGSTCGVGNS 115 (460)
T ss_pred CCeEEEEecCCCCccceeeeeccCCCCCCCCcCCcceEEecCHHHHHHHhCCCccccCCceEEEEEEECCCCCccccccc
Confidence 466999999987666654421 1111 11 1235543211 1 11469999998542 35
Q ss_pred CeeeEEEEEEccccCCCCCCCCCCccEEEEeecCCCCc---cceEEEEEEEEec
Q 001830 347 DDYVGLVRFDLNEVPTRVPPDSPLAAEWYRLEDRKGEK---KKGELMLAVWYGT 397 (1008)
Q Consensus 347 d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~---~~G~i~l~~~~~~ 397 (1008)
..+||.+.++|. +.............|+.+-...... ...+++|.+...+
T Consensus 116 ~klLG~v~vpld-l~~ae~kp~v~hnGWi~iGk~~~~~~~~~~aeLHl~Vr~Ep 168 (460)
T PF06219_consen 116 GKLLGKVRVPLD-LKWAEGKPVVFHNGWISIGKNKQGSGKSPSAELHLVVRAEP 168 (460)
T ss_pred ceEEEEEEEEec-cccccCCeeEEEccceecCCCCCCCCCCCcceEEEEEeccC
Confidence 789999999987 3322211223457899997664322 3467777776543
No 327
>KOG4027 consensus Uncharacterized conserved protein [Function unknown]
Probab=27.19 E-value=3.5e+02 Score=26.00 Aligned_cols=69 Identities=20% Similarity=0.246 Sum_probs=42.9
Q ss_pred CCCCeEEEEEE--CCEEEEeee-----------ecCCCCc-ccccEEEEEeeC--C--CceEEEEEEeCCCCCCCCCCCC
Q 001830 622 GTADTYCVAKY--GHKWVRTRT-----------IINSLSA-KYNEQYTWEVYD--P--ATVLTVGVFDNSHIGGSSGSKD 683 (1008)
Q Consensus 622 g~~dpyv~~~~--~~~~~~T~~-----------~~~~~nP-~wne~f~~~v~~--~--~~~l~i~V~d~~~~~~~~~~~d 683 (1008)
..+|.||+... |+.|.-+.- .++-.|| +||--++..... | -..|.+.||..|.+| +|
T Consensus 24 e~~dv~~ky~~Vag~DW~~~~Gpqegvsq~s~~~r~~~~~iv~n~Pievt~KstsPygWPqivl~vfg~d~~G-----~d 98 (187)
T KOG4027|consen 24 EESDVCVKYSTVAGGDWKIINGPQEGVSQSSFSFRGADNQIVINLPIEVTLKSTSPYGWPQIVLNVFGKDHSG-----KD 98 (187)
T ss_pred CCCceEEEEEEEecCCceeccCcccchhhheeccccCCCceEEecceEEEeccCCCCCCceEEEEEecCCcCC-----cc
Confidence 45688888654 555532211 1122344 455444443332 3 246999999999888 89
Q ss_pred ceeEEEEEEccc
Q 001830 684 VKIGKVRIRIST 695 (1008)
Q Consensus 684 ~~lG~~~i~l~~ 695 (1008)
...|...|.+-.
T Consensus 99 ~v~GYg~~hiP~ 110 (187)
T KOG4027|consen 99 CVTGYGMLHIPT 110 (187)
T ss_pred eeeeeeeEecCc
Confidence 999999888754
No 328
>PHA01159 hypothetical protein
Probab=25.62 E-value=2.5e+02 Score=25.41 Aligned_cols=33 Identities=18% Similarity=0.154 Sum_probs=25.6
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHhccccCC
Q 001830 913 YDRLRSVAGRIQTVVGDVATQGERIQALLSWRD 945 (1008)
Q Consensus 913 ~~~l~~~~~~vq~~l~~~a~~~e~~~~l~~w~~ 945 (1008)
|..|+.++..-|..++.++++.+.+++.|-|-.
T Consensus 5 ~~~L~~I~~~~qt~~dFf~~~~d~i~~~fv~~~ 37 (114)
T PHA01159 5 YSALEFIANIGQTFLDFFDVAIDWIKNAFVYGA 37 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 456777888888888888888888888876643
No 329
>PF14851 FAM176: FAM176 family
Probab=25.41 E-value=2.9e+02 Score=26.71 Aligned_cols=22 Identities=27% Similarity=0.206 Sum_probs=12.6
Q ss_pred hHHHHHHHHhhccccccCchhHHHHHH
Q 001830 814 SGLFAAGKWFGEVCMWRNPITTVLVHI 840 (1008)
Q Consensus 814 ~~~~~~~~~i~~l~~W~~p~~t~~~~~ 840 (1008)
...++...+| |.+|-+.+++|+
T Consensus 6 SnsLaaya~I-----~~~PE~~aLYFv 27 (153)
T PF14851_consen 6 SNSLAAYAHI-----RDNPERFALYFV 27 (153)
T ss_pred HHHHHHHHHH-----HhChHHHHHHHH
Confidence 3344444445 678887666544
No 330
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis. Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....
Probab=24.87 E-value=2.2e+02 Score=24.43 Aligned_cols=22 Identities=9% Similarity=0.351 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHhccccCChhhH
Q 001830 928 GDVATQGERIQALLSWRDPRAA 949 (1008)
Q Consensus 928 ~~~a~~~e~~~~l~~w~~p~~t 949 (1008)
..+...-.+++.-.-|+.-+..
T Consensus 48 ~~F~k~a~~l~r~~~~~~~k~~ 69 (89)
T PF00957_consen 48 KQFKKNAKKLKRKMWWRNYKLY 69 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444455566554433
No 331
>cd05137 RasGAP_CLA2_BUD2 CLA2/BUD2 functions as a GTPase-activating protein (GAP) for BUD1/RSR1 and is necessary for proper bud-site selection in yeast. BUD2 has sequence similarity to the catalytic domain of RasGAPs, and stimulates the hydrolysis of BUD1-GTP to BUD1-GDP. Elimination of Bud2p activity by mutation causes a random budding pattern with no growth defect. Overproduction of Bud2p also alters the budding pattern.
Probab=23.85 E-value=96 Score=35.27 Aligned_cols=18 Identities=22% Similarity=0.372 Sum_probs=11.1
Q ss_pred hhhHHHHHHHHHHHhHHH
Q 001830 800 RRSKANFFRLMSVFSGLF 817 (1008)
Q Consensus 800 ~~~~~n~~rl~~~~~~~~ 817 (1008)
..+..|...|...+.-++
T Consensus 192 ~~l~~n~~~L~~~~~~~~ 209 (395)
T cd05137 192 QIIEHNWERLISLTEEIW 209 (395)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 345677777777665443
No 332
>PF13779 DUF4175: Domain of unknown function (DUF4175)
Probab=22.19 E-value=7.2e+02 Score=31.42 Aligned_cols=47 Identities=21% Similarity=0.253 Sum_probs=29.1
Q ss_pred cccCChhhHHHHHHHHHHHHHHHHHhhHHHHHHhhhh-------------hhhcCCCCCCC
Q 001830 941 LSWRDPRAAAIFVIFCLVAAVVLYVTPFQLLALLAGC-------------YIMRHPRFRHK 988 (1008)
Q Consensus 941 ~~w~~p~~t~~~~~~~~~~~~~~~~iP~r~i~l~~g~-------------~~~~~P~~~~~ 988 (1008)
+.-+||++...++++++++++++. -.+|+--.+... .++.+|.|+..
T Consensus 122 ~a~~Dp~ALR~~a~l~lv~a~~~~-~~~R~~~~~~~~~~~~~~~~~~~idaWItPPaYTG~ 181 (820)
T PF13779_consen 122 LARRDPFALRALALLLLVAALAFG-GSGRVGRAFDPFPGGAAAAPGPRIDAWITPPAYTGR 181 (820)
T ss_pred ccccccHHHHHHHHHHHHHHHHhc-ccchhhhhhhccCCCccCCCCCeEEEEecCCCcCCC
Confidence 344889998877777777766544 345544333211 14778999864
No 333
>COG5052 YOP1 Protein involved in membrane traffic [Intracellular trafficking and secretion]
Probab=21.12 E-value=4.8e+02 Score=25.76 Aligned_cols=83 Identities=13% Similarity=0.006 Sum_probs=47.1
Q ss_pred HhhHHHHHHHHHHHHHHHHhccccCChh------------------hHHHHHHHHHHHH-----HHHHHhhHHHHHHhhh
Q 001830 920 AGRIQTVVGDVATQGERIQALLSWRDPR------------------AAAIFVIFCLVAA-----VVLYVTPFQLLALLAG 976 (1008)
Q Consensus 920 ~~~vq~~l~~~a~~~e~~~~l~~w~~p~------------------~t~~~~~~~~~~~-----~~~~~iP~r~i~l~~g 976 (1008)
..-+.+.+..+-.+++.+.|++.+.-|. ++.+.+..|+-+. .+++++|+.+..=...
T Consensus 45 f~~l~~lfs~vlG~g~ilt~~~~~~lP~~~~l~a~~~~n~~dd~q~l~ywmV~~~lsaie~~s~~il~~vP~Y~~~K~vF 124 (186)
T COG5052 45 FLYLLNLFSTVLGFGLILTNVAGFSLPAQLSLVAFYTLNFMDDTQLLTYWMVFGFLSAIEKYSGAILSKVPFYWTLKNVF 124 (186)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHccHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 3445666666666666666665555543 3344444443222 2577799776655544
Q ss_pred hhhhcCCCCCCCCCCchhhhhhcCCCC
Q 001830 977 CYIMRHPRFRHKTPSAPINFFRRLPAR 1003 (1008)
Q Consensus 977 ~~~~~~P~~~~~~~~~~~~~~~r~ps~ 1003 (1008)
+.++-.|+++. -.--..+..++.||+
T Consensus 125 llw~~~prt~G-A~~IY~~~i~p~~s~ 150 (186)
T COG5052 125 LLWLLLPRTEG-ARIIYDDIIAPDVSD 150 (186)
T ss_pred HHHHhccccCc-eeeeHHhhccccccH
Confidence 44456688876 233455666666665
Done!