BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 001831
(1008 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3GO9|A Chain A, Predicted Insulinase Family Protease From Yersinia Pestis
Length = 492
Score = 77.4 bits (189), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 64/282 (22%), Positives = 119/282 (42%), Gaps = 14/282 (4%)
Query: 41 GRLDNGLFYYVRCN-SKPRMRAALALAVKAGSVLEEEHERGVAHIVEHLAFSATEKYTNH 99
G+LDNG + + +P R L L V GS+ E E G AH++ LA ++ +T
Sbjct: 29 GKLDNGFSWQLLATPQRPSDRIELRLIVNTGSLSENTQEVGFAHLLPRLALXSSASFTPA 88
Query: 100 DIIKFLESIGAEFGACQNAVTSADETVYELFVPVDKPELLSRAISVLAEFSTEVRVSKDD 159
+ + A+TS D T+Y L +P ++P+LL A++ L++ + + VS+
Sbjct: 89 QLQSLWQQGIDNERPLPPAITSYDFTLYSLSLPNNRPDLLKDALAWLSDTAGNLAVSEQT 148
Query: 160 LEKERGAVLEEYRGNRNASGRMQDAHWVLMMEGSKYAECLPIGLEKVIRTVSSDTVKRFY 219
+ + +Q+ W ++GS P + V + V + +K+FY
Sbjct: 149 VNAALNTATDPI---ATFPQNIQEPWWRYRLKGSSLIGHDPG--QPVTQPVDVEKLKQFY 203
Query: 220 QKWYRLQNMAVIAVGDFPDTKGVVELINTHFGQKKSATDPPVIPKFPVPSHQEPRFSCFI 279
Q+WY + VG+ D++ + I+ F + K P P EP
Sbjct: 204 QQWYTPDAXTLYVVGNV-DSRSIAAQISKAFSELKGKRTAPAAVATLAPLPPEP--VSLX 260
Query: 280 ESEAGGSAVIVSYKM---PVNELKTIKDY--KEMLTESMFLH 316
+A + + + P+ + + Y ++ E++F H
Sbjct: 261 NEQAAQDTLSLXWDTPWHPIQDSXALSRYWRSDLAREALFWH 302
>pdb|1SQB|A Chain A, Crystal Structure Analysis Of Bovine Bc1 With Azoxystrobin
pdb|1SQP|A Chain A, Crystal Structure Analysis Of Bovine Bc1 With Myxothiazol
Length = 480
Score = 67.4 bits (163), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 57/229 (24%), Positives = 104/229 (45%), Gaps = 20/229 (8%)
Query: 42 RLDNGLFYYVRCNSKPRMRAALALAVKAGSVLEEEHERGVAHIVEHLAFSATEKYTNHDI 101
+LDNGL +S+P + + + AGS E E G + VEHLAF T+ + +
Sbjct: 52 QLDNGLRVASEQSSQPT--CTVGVWIDAGSRYESEKNNGAGYFVEHLAFKGTKNRPGNAL 109
Query: 102 IKFLESIGAEFGACQNAVTSADETVYEL-FVPVDKPELLSRAISVLAEFSTEVRVSKDDL 160
K +ES+GA NA ++ + T Y + + D P +A+ +LA+ + +
Sbjct: 110 EKEVESMGAHL----NAYSTREHTAYYIKALSKDLP----KAVELLADIVQNCSLEDSQI 161
Query: 161 EKERGAVLEEYRGNRNASGRMQDAHW----VLMMEGSKYAECLPIGLEKVIRTVSSDTVK 216
EKER +L+E + N + M+D + +G+ A+ + G + +R +S +
Sbjct: 162 EKERDVILQELQENDTS---MRDVVFNYLHATAFQGTPLAQSVE-GPSENVRKLSRADLT 217
Query: 217 RFYQKWYRLQNMAVIAVGDFPDTKGVVELINTHFGQKKSATDPPVIPKF 265
+ + Y+ M + A G + + +++L HF D +P
Sbjct: 218 EYLSRHYKAPRMVLAAAGGL-EHRQLLDLAQKHFSGLSGTYDEDAVPTL 265
>pdb|1BGY|A Chain A, Cytochrome Bc1 Complex From Bovine
pdb|1BGY|M Chain M, Cytochrome Bc1 Complex From Bovine
pdb|1BE3|A Chain A, Cytochrome Bc1 Complex From Bovine
pdb|1L0L|A Chain A, Structure Of Bovine Mitochondrial Cytochrome Bc1 Complex
With A Bound Fungicide Famoxadone
pdb|1L0N|A Chain A, Native Structure Of Bovine Mitochondrial Cytochrome Bc1
Complex
pdb|1NTK|A Chain A, Crystal Structure Of Mitochondrial Cytochrome Bc1 In
Complex With Antimycin A1
pdb|1NTM|A Chain A, Crystal Structure Of Mitochondrial Cytochrome Bc1 Complex
At 2.4 Angstrom
pdb|1NTZ|A Chain A, Crystal Structure Of Mitochondrial Cytochrome Bc1 Complex
Bound With Ubiquinone
pdb|1NU1|A Chain A, Crystal Structure Of Mitochondrial Cytochrome Bc1
Complexed With 2- Nonyl-4-Hydroxyquinoline N-Oxide
(Nqno)
pdb|1PP9|A Chain A, Bovine Cytochrome Bc1 Complex With Stigmatellin Bound
pdb|1PP9|N Chain N, Bovine Cytochrome Bc1 Complex With Stigmatellin Bound
pdb|1PPJ|A Chain A, Bovine Cytochrome Bc1 Complex With Stigmatellin And
Antimycin
pdb|1PPJ|N Chain N, Bovine Cytochrome Bc1 Complex With Stigmatellin And
Antimycin
pdb|2A06|A Chain A, Bovine Cytochrome Bc1 Complex With Stigmatellin Bound
pdb|2A06|N Chain N, Bovine Cytochrome Bc1 Complex With Stigmatellin Bound
pdb|1SQV|A Chain A, Crystal Structure Analysis Of Bovine Bc1 With Uhdbt
pdb|1SQX|A Chain A, Crystal Structure Analysis Of Bovine Bc1 With Stigmatellin
A
pdb|1SQQ|A Chain A, Crystal Structure Analysis Of Bovine Bc1 With Methoxy
Acrylate Stilbene (Moas)
pdb|2FYU|A Chain A, Crystal Structure Of Bovine Heart Mitochondrial Bc1 With
Jg144 Inhibitor
pdb|2YBB|A Chain A, Fitted Model For Bovine Mitochondrial Supercomplex
I1iii2iv1 By Single Particle Cryo-Em (Emd-1876)
pdb|2YBB|AA Chain a, Fitted Model For Bovine Mitochondrial Supercomplex
I1iii2iv1 By Single Particle Cryo-Em (Emd-1876)
Length = 446
Score = 67.4 bits (163), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 57/229 (24%), Positives = 105/229 (45%), Gaps = 20/229 (8%)
Query: 42 RLDNGLFYYVRCNSKPRMRAALALAVKAGSVLEEEHERGVAHIVEHLAFSATEKYTNHDI 101
+LDNGL +S+P + + + AGS E E G + VEHLAF T+ + +
Sbjct: 18 QLDNGLRVASEQSSQPT--CTVGVWIDAGSRYESEKNNGAGYFVEHLAFKGTKNRPGNAL 75
Query: 102 IKFLESIGAEFGACQNAVTSADETVYEL-FVPVDKPELLSRAISVLAEFSTEVRVSKDDL 160
K +ES+GA NA ++ + T Y + + D P +A+ +LA+ + +
Sbjct: 76 EKEVESMGAHL----NAYSTREHTAYYIKALSKDLP----KAVELLADIVQNCSLEDSQI 127
Query: 161 EKERGAVLEEYRGNRNASGRMQDAHWVLM----MEGSKYAECLPIGLEKVIRTVSSDTVK 216
EKER +L+E + N + M+D + + +G+ A+ + G + +R +S +
Sbjct: 128 EKERDVILQELQENDTS---MRDVVFNYLHATAFQGTPLAQSVE-GPSENVRKLSRADLT 183
Query: 217 RFYQKWYRLQNMAVIAVGDFPDTKGVVELINTHFGQKKSATDPPVIPKF 265
+ + Y+ M + A G + + +++L HF D +P
Sbjct: 184 EYLSRHYKAPRMVLAAAGGL-EHRQLLDLAQKHFSGLSGTYDEDAVPTL 231
>pdb|1QCR|A Chain A, Crystal Structure Of Bovine Mitochondrial Cytochrome Bc1
Complex, Alpha Carbon Atoms Only
Length = 446
Score = 67.4 bits (163), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 57/229 (24%), Positives = 105/229 (45%), Gaps = 20/229 (8%)
Query: 42 RLDNGLFYYVRCNSKPRMRAALALAVKAGSVLEEEHERGVAHIVEHLAFSATEKYTNHDI 101
+LDNGL +S+P + + + AGS E E G + VEHLAF T+ + +
Sbjct: 18 QLDNGLRVASEQSSQPT--CTVGVWIDAGSRYESEKNNGAGYFVEHLAFKGTKNRPGNAL 75
Query: 102 IKFLESIGAEFGACQNAVTSADETVYEL-FVPVDKPELLSRAISVLAEFSTEVRVSKDDL 160
K +ES+GA NA ++ + T Y + + D P +A+ +LA+ + +
Sbjct: 76 EKEVESMGAHL----NAYSTREHTAYYIKALSKDLP----KAVELLADIVQNCSLEDSQI 127
Query: 161 EKERGAVLEEYRGNRNASGRMQDAHWVLM----MEGSKYAECLPIGLEKVIRTVSSDTVK 216
EKER +L+E + N + M+D + + +G+ A+ + G + +R +S +
Sbjct: 128 EKERDVILQELQENDTS---MRDVVFNYLHATAFQGTPLAQSVE-GPSENVRKLSRADLT 183
Query: 217 RFYQKWYRLQNMAVIAVGDFPDTKGVVELINTHFGQKKSATDPPVIPKF 265
+ + Y+ M + A G + + +++L HF D +P
Sbjct: 184 EYLSRHYKAPRMVLAAAGGL-EHRQLLDLAQKHFSGLSGTYDEDAVPTL 231
>pdb|1BCC|A Chain A, Cytochrome Bc1 Complex From Chicken
pdb|3BCC|A Chain A, Stigmatellin And Antimycin Bound Cytochrome Bc1 Complex
From Chicken
pdb|2BCC|A Chain A, Stigmatellin-Bound Cytochrome Bc1 Complex From Chicken
Length = 446
Score = 62.0 bits (149), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 58/227 (25%), Positives = 103/227 (45%), Gaps = 16/227 (7%)
Query: 42 RLDNGLFYYVRCNSKPRMRAALALAVKAGSVLEEEHERGVAHIVEHLAFSATEKYTNHDI 101
+LDNG+ +S+P + + + AGS E E G + +EHLAF T+ + +
Sbjct: 18 QLDNGVRVASEQSSQPT--CTVGVWIDAGSRYESEKNNGAGYFLEHLAFKGTKNRPQNAL 75
Query: 102 IKFLESIGAEFGACQNAVTSADETVYEL-FVPVDKPELLSRAISVLAEFSTEVRVSKDDL 160
K +ES+GA NA +S + T Y + + D P +A+ +LA+ + +
Sbjct: 76 EKEVESMGAHL----NAYSSREHTAYYIKALSKDVP----KAVELLADIVQNCSLEDSQI 127
Query: 161 EKERGAVLEEYRGNRNASGRMQDAHWV--LMMEGSKYAECLPIGLEKVIRTVSSDTVKRF 218
EKER ++ E + N + S R +++ +G+ A+ + G + IR +S + +
Sbjct: 128 EKERDVIVRELQEN-DTSMREVVFNYLHATAFQGTGLAQSVE-GPSENIRKLSRADLTEY 185
Query: 219 YQKWYRLQNMAVIAVGDFPDTKGVVELINTHFGQKKSATDPPVIPKF 265
Y M + A G + + ++EL HFG D +P
Sbjct: 186 LSTHYTAPRMVLAAAGGV-EHQQLLELAQKHFGGVPFTYDDDAVPTL 231
>pdb|3CWB|A Chain A, Chicken Cytochrome Bc1 Complex Inhibited By An Iodinated
Analogue Of The Polyketide Crocacin-d
pdb|3CWB|N Chain N, Chicken Cytochrome Bc1 Complex Inhibited By An Iodinated
Analogue Of The Polyketide Crocacin-d
pdb|3H1H|A Chain A, Cytochrome Bc1 Complex From Chicken
pdb|3H1H|N Chain N, Cytochrome Bc1 Complex From Chicken
pdb|3H1I|A Chain A, Stigmatellin And Antimycin Bound Cytochrome Bc1 Complex
From Chicken
pdb|3H1I|N Chain N, Stigmatellin And Antimycin Bound Cytochrome Bc1 Complex
From Chicken
pdb|3H1J|A Chain A, Stigmatellin-Bound Cytochrome Bc1 Complex From Chicken
pdb|3H1J|N Chain N, Stigmatellin-Bound Cytochrome Bc1 Complex From Chicken
pdb|3H1K|A Chain A, Chicken Cytochrome Bc1 Complex With Zn++ And An Iodinated
Derivative Of Kresoxim-Methyl Bound
pdb|3H1K|N Chain N, Chicken Cytochrome Bc1 Complex With Zn++ And An Iodinated
Derivative Of Kresoxim-Methyl Bound
pdb|3H1L|A Chain A, Chicken Cytochrome Bc1 Complex With Ascochlorin Bound At
Qo And Qi Sites
pdb|3H1L|N Chain N, Chicken Cytochrome Bc1 Complex With Ascochlorin Bound At
Qo And Qi Sites
pdb|3L70|A Chain A, Cytochrome Bc1 Complex From Chicken With Trifloxystrobin
Bound
pdb|3L70|N Chain N, Cytochrome Bc1 Complex From Chicken With Trifloxystrobin
Bound
pdb|3L71|A Chain A, Cytochrome Bc1 Complex From Chicken With Azoxystrobin
Bound
pdb|3L71|N Chain N, Cytochrome Bc1 Complex From Chicken With Azoxystrobin
Bound
pdb|3L72|A Chain A, Chicken Cytochrome Bc1 Complex With Kresoxym-I-Dimethyl
Bound
pdb|3L72|N Chain N, Chicken Cytochrome Bc1 Complex With Kresoxym-I-Dimethyl
Bound
pdb|3L73|A Chain A, Cytochrome Bc1 Complex From Chicken With Triazolone
Inhibitor
pdb|3L73|N Chain N, Cytochrome Bc1 Complex From Chicken With Triazolone
Inhibitor
pdb|3L74|A Chain A, Cytochrome Bc1 Complex From Chicken With Famoxadone Bound
pdb|3L74|N Chain N, Cytochrome Bc1 Complex From Chicken With Famoxadone Bound
pdb|3L75|A Chain A, Cytochrome Bc1 Complex From Chicken With Fenamidone Bound
pdb|3L75|N Chain N, Cytochrome Bc1 Complex From Chicken With Fenamidone Bound
pdb|3TGU|A Chain A, Cytochrome Bc1 Complex From Chicken With Pfvs-Designed Moa
Inhibitor Bound
pdb|3TGU|N Chain N, Cytochrome Bc1 Complex From Chicken With Pfvs-Designed Moa
Inhibitor Bound
Length = 446
Score = 60.1 bits (144), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 57/226 (25%), Positives = 98/226 (43%), Gaps = 14/226 (6%)
Query: 43 LDNGLFYYVRCNSKPRMRAALALAVKAGSVLEEEHERGVAHIVEHLAFSATEKYTNHDII 102
LDNGL +S+P + + + AGS E E G + VEHLAF T+K
Sbjct: 19 LDNGLRVASEESSQPT--CTVGVWIGAGSRYENEKNNGAGYFVEHLAFKGTKKRPCAAFE 76
Query: 103 KFLESIGAEFGACQNAVTSADETVYEL-FVPVDKPELLSRAISVLAEFSTEVRVSKDDLE 161
K +ES+GA F N TS ++T + + + D P++ + +LA+ + + +E
Sbjct: 77 KEVESMGAHF----NGYTSREQTAFYIKALSKDMPKV----VELLADVVQNCALEESQIE 128
Query: 162 KERGAVLEEYRGNRNASGRMQ-DAHWVLMMEGSKYAECLPIGLEKVIRTVSSDTVKRFYQ 220
KERG +L+E + N + D +G+ A + G + I+ ++ + +
Sbjct: 129 KERGVILQELKEMDNDMTNVTFDYLHATAFQGTALARTVE-GTTENIKHLTRADLASYID 187
Query: 221 KWYRLQNMAVIAVGDFPDTKGVVELINTHFGQKKSATDPPVIPKFP 266
++ M + A G K +V+ HF +P P
Sbjct: 188 THFKAPRMVLAAAGGISH-KELVDAARQHFSGVSFTYKEDAVPILP 232
>pdb|3HDI|A Chain A, Crystal Structure Of Bacillus Halodurans Metallo Peptidase
pdb|3HDI|B Chain B, Crystal Structure Of Bacillus Halodurans Metallo Peptidase
Length = 421
Score = 59.7 bits (143), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 56/217 (25%), Positives = 96/217 (44%), Gaps = 14/217 (6%)
Query: 43 LDNGLFYYVRCNSKPRMRAALALAVKAGSVLEEEHERGVAHIVEHLAFSATEKYTNHDII 102
LDNG+ S R ++ + V GS E E G++H +EH+ F T + +I
Sbjct: 7 LDNGVRIITEKMSTVR-SVSIGIWVGTGSRYESAEENGISHFLEHMFFKGTNTRSAQEIA 65
Query: 103 KFLESIGAEFGACQNAVTSADETVYELFVPVDKPELLSRAISVLAEFSTEVRVSKDDLEK 162
+F +SIG + NA TS + T Y V D +AI L++ K++LEK
Sbjct: 66 EFFDSIGGQV----NAFTSKEYTCYYAKVLDDHA---GQAIDTLSDMFFHSTFQKEELEK 118
Query: 163 ERGAVLEEYRGNRNASGRMQDAHWVLMMEG-SKYAECLPI-GLEKVIRTVSSDTVKRFYQ 220
ER V EE + + + H +L K++ PI G + + + + ++ +
Sbjct: 119 ERKVVFEEIKMVDDTPDDI--VHDLLSSATYGKHSLGYPILGTVETLNSFNEGMLRHYMD 176
Query: 221 KWYRLQNMAVIAVGDFPDTKGVVELINTHFGQKKSAT 257
++Y + + G+ D +++ I F Q K T
Sbjct: 177 RFYTGDYVVISVAGNVHDE--LIDKIKETFSQVKPTT 211
>pdb|3AMI|A Chain A, The Crystal Structure Of The M16b Metallopeptidase Subunit
From Sphingomonas Sp. A1
pdb|3AMI|B Chain B, The Crystal Structure Of The M16b Metallopeptidase Subunit
From Sphingomonas Sp. A1
Length = 445
Score = 57.8 bits (138), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 80/357 (22%), Positives = 151/357 (42%), Gaps = 16/357 (4%)
Query: 43 LDNGLFYYVRCNSKPRMRAALALAVKAGSVLEEEHERGVAHIVEHLAFSATEKYTNHDII 102
L NGL VR + + + + + GS+ E GVAH +EH+ F T+ +
Sbjct: 12 LPNGLKVVVREDHRAPTLVHM-VWYRVGSMDETTGTTGVAHALEHMMFKGTKDVGPGEFS 70
Query: 103 KFLESIGAEFGACQNAVTSADETVYELFVPVDKPELLSRAISVLAEFSTEVRVSKDDLEK 162
K + A G NA T+ D T Y VP + LS + + A+ + V + +K
Sbjct: 71 KRV----AAMGGRDNAFTTRDYTAYYQQVPSSR---LSDVMGLEADRMANLVVDDELFKK 123
Query: 163 ERGAVLEEYRGNRNASGRMQDAHWVLMMEGSKYAECLP-IGLEKVIRTVSSDTVKRFYQK 221
E + EE R + R + ++ + +P IG I+ +++ V+ +Y++
Sbjct: 124 EIQVIAEERRWRTDDKPRSKAYEALMAASYVAHPYRVPVIGWMNDIQNMTAQDVRDWYKR 183
Query: 222 WYRLQNMAVIAVGDFPDTKGVVELINTHFGQKKSATDPPVIPKFPVPSHQEPRFSCFIES 281
WY N V+ VGD + + V L +G K + + P + P R +++
Sbjct: 184 WYGPNNATVVVVGDV-EHEAVFRLAEQTYG-KLARVEAPARKQQGEPQQAGVR-RVTVKA 240
Query: 282 EAGGSAVIVSYKMP-VNELKTIKDYKEMLTESMFLHALN-QRFFKLSRRKDPPYFSCSAS 339
A + +++ +P + +L +D + + L + R + R + S A
Sbjct: 241 PAELPYLALAWHVPAIVDLDKSRDAYALEILAAVLDGYDGARMTRQLVRGNKHAVSAGAG 300
Query: 340 ADDLVRPLKAYIMSSSCKERG-TLKALESML-IEVARVRLHGFSEREVSVARALLMS 394
D L R + + +G T+ LE+ L +V + G +E E+S ++ +++
Sbjct: 301 YDSLSRGQQGLFILEGVPSKGVTIAQLETDLRAQVRDIAAKGVTEAELSRVKSQMVA 357
>pdb|3AMJ|C Chain C, The Crystal Structure Of The Heterodimer Of M16b Peptidase
From Sphingomonas Sp. A1
pdb|3AMJ|A Chain A, The Crystal Structure Of The Heterodimer Of M16b Peptidase
From Sphingomonas Sp. A1
Length = 437
Score = 57.8 bits (138), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 80/357 (22%), Positives = 151/357 (42%), Gaps = 16/357 (4%)
Query: 43 LDNGLFYYVRCNSKPRMRAALALAVKAGSVLEEEHERGVAHIVEHLAFSATEKYTNHDII 102
L NGL VR + + + + + GS+ E GVAH +EH+ F T+ +
Sbjct: 12 LPNGLKVVVREDHRAPTLVHM-VWYRVGSMDETTGTTGVAHALEHMMFKGTKDVGPGEFS 70
Query: 103 KFLESIGAEFGACQNAVTSADETVYELFVPVDKPELLSRAISVLAEFSTEVRVSKDDLEK 162
K + A G NA T+ D T Y VP + LS + + A+ + V + +K
Sbjct: 71 KRV----AAMGGRDNAFTTRDYTAYYQQVPSSR---LSDVMGLEADRMANLVVDDELFKK 123
Query: 163 ERGAVLEEYRGNRNASGRMQDAHWVLMMEGSKYAECLP-IGLEKVIRTVSSDTVKRFYQK 221
E + EE R + R + ++ + +P IG I+ +++ V+ +Y++
Sbjct: 124 EIQVIAEERRWRTDDKPRSKAYEALMAASYVAHPYRVPVIGWMNDIQNMTAQDVRDWYKR 183
Query: 222 WYRLQNMAVIAVGDFPDTKGVVELINTHFGQKKSATDPPVIPKFPVPSHQEPRFSCFIES 281
WY N V+ VGD + + V L +G K + + P + P R +++
Sbjct: 184 WYGPNNATVVVVGDV-EHEAVFRLAEQTYG-KLARVEAPARKQQGEPQQAGVR-RVTVKA 240
Query: 282 EAGGSAVIVSYKMP-VNELKTIKDYKEMLTESMFLHALN-QRFFKLSRRKDPPYFSCSAS 339
A + +++ +P + +L +D + + L + R + R + S A
Sbjct: 241 PAELPYLALAWHVPAIVDLDKSRDAYALEILAAVLDGYDGARMTRQLVRGNKHAVSAGAG 300
Query: 340 ADDLVRPLKAYIMSSSCKERG-TLKALESML-IEVARVRLHGFSEREVSVARALLMS 394
D L R + + +G T+ LE+ L +V + G +E E+S ++ +++
Sbjct: 301 YDSLSRGQQGLFILEGVPSKGVTIAQLETDLRAQVRDIAAKGVTEAELSRVKSQMVA 357
>pdb|1HR6|B Chain B, Yeast Mitochondrial Processing Peptidase
pdb|1HR6|D Chain D, Yeast Mitochondrial Processing Peptidase
pdb|1HR6|F Chain F, Yeast Mitochondrial Processing Peptidase
pdb|1HR6|H Chain H, Yeast Mitochondrial Processing Peptidase
Length = 443
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 61/242 (25%), Positives = 103/242 (42%), Gaps = 27/242 (11%)
Query: 37 GVDYGRLDNGLFY---YVRCNSKPRMRAALALAVKAGSVLEEEHERGVAHIVEHLAFSAT 93
G +L NGL Y+ S A + + V AGS E G AH +EHLAF T
Sbjct: 6 GTRTSKLPNGLTIATEYIPNTSS----ATVGIFVDAGSRAENVKNNGTAHFLEHLAFKGT 61
Query: 94 EKYTNHDIIKFLESIGAEFGACQNAVTSADETVYELFVPVDKPELLSRAISVLAEFSTEV 153
+ I +E+IG+ NA TS + TVY E + +A+ +L++ T+
Sbjct: 62 QNRPQQGIELEIENIGSHL----NAYTSRENTVY---YAKSLQEDIPKAVDILSDILTKS 114
Query: 154 RVSKDDLEKERGAVLEEYRGNRNASGRMQDAHWVLMMEGSKYAECLPIGLE-----KVIR 208
+ +E+ER ++ E +M D + Y + P+G K I+
Sbjct: 115 VLDNSAIERERDVIIRE----SEEVDKMYDEVVFDHLHEITYKDQ-PLGRTILGPIKNIK 169
Query: 209 TVSSDTVKRFYQKWYRLQNMAVIAVGDFPDTKGVVELINTHFGQKKSATDPPVI--PKFP 266
+++ +K + K Y+ M + G D + +V+ +FG + P + P+ P
Sbjct: 170 SITRTDLKDYITKNYKGDRMVLAGAGAV-DHEKLVQYAQKYFGHVPKSESPVPLGSPRGP 228
Query: 267 VP 268
+P
Sbjct: 229 LP 230
>pdb|1HR7|B Chain B, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
pdb|1HR7|D Chain D, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
pdb|1HR7|F Chain F, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
pdb|1HR7|H Chain H, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
pdb|1HR8|B Chain B, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Cytochrome C Oxidase Iv Signal Peptide
pdb|1HR8|D Chain D, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Cytochrome C Oxidase Iv Signal Peptide
pdb|1HR8|F Chain F, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Cytochrome C Oxidase Iv Signal Peptide
pdb|1HR8|H Chain H, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Cytochrome C Oxidase Iv Signal Peptide
pdb|1HR9|B Chain B, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Malate Dehydrogenase Signal Peptide
pdb|1HR9|D Chain D, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Malate Dehydrogenase Signal Peptide
pdb|1HR9|F Chain F, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Malate Dehydrogenase Signal Peptide
pdb|1HR9|H Chain H, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Malate Dehydrogenase Signal Peptide
Length = 443
Score = 54.7 bits (130), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 60/242 (24%), Positives = 103/242 (42%), Gaps = 27/242 (11%)
Query: 37 GVDYGRLDNGLFY---YVRCNSKPRMRAALALAVKAGSVLEEEHERGVAHIVEHLAFSAT 93
G +L NGL Y+ S A + + V AGS E G AH ++HLAF T
Sbjct: 6 GTRTSKLPNGLTIATEYIPNTSS----ATVGIFVDAGSRAENVKNNGTAHFLQHLAFKGT 61
Query: 94 EKYTNHDIIKFLESIGAEFGACQNAVTSADETVYELFVPVDKPELLSRAISVLAEFSTEV 153
+ I +E+IG+ NA TS + TVY E + +A+ +L++ T+
Sbjct: 62 QNRPQQGIELEIENIGSHL----NAYTSRENTVY---YAKSLQEDIPKAVDILSDILTKS 114
Query: 154 RVSKDDLEKERGAVLEEYRGNRNASGRMQDAHWVLMMEGSKYAECLPIGLE-----KVIR 208
+ +E+ER ++ E +M D + Y + P+G K I+
Sbjct: 115 VLDNSAIERERDVIIRE----SEEVDKMYDEVVFDHLHEITYKDQ-PLGRTILGPIKNIK 169
Query: 209 TVSSDTVKRFYQKWYRLQNMAVIAVGDFPDTKGVVELINTHFGQKKSATDPPVI--PKFP 266
+++ +K + K Y+ M + G D + +V+ +FG + P + P+ P
Sbjct: 170 SITRTDLKDYITKNYKGDRMVLAGAGAV-DHEKLVQYAQKYFGHVPKSESPVPLGSPRGP 228
Query: 267 VP 268
+P
Sbjct: 229 LP 230
>pdb|1Q2L|A Chain A, Crystal Structure Of Pitrilysin
Length = 939
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/140 (32%), Positives = 68/140 (48%), Gaps = 11/140 (7%)
Query: 42 RLDNGLFYYVRCNSKPRMRAAL-ALAVKAGSVLEEEHERGVAHIVEHLAFSATEKYTNHD 100
RLDNG+ V S P+ +L AL V GS+ + E +G+AH +EH++ ++KY D
Sbjct: 25 RLDNGMV--VLLVSDPQAVKSLSALVVPVGSLEDPEAYQGLAHYLEHMSLMGSKKYPQAD 82
Query: 101 -IIKFLESIGAEFGACQNAVTSADETVYELFVPVDKPELLSRAISVLAEFSTEVRVSKDD 159
+ ++L+ G NA T+ T + L V D L A+ LA+ E + K
Sbjct: 83 SLAEYLKM----HGGSHNASTAPYRTAFYLEVENDA---LPGAVDRLADAIAEPLLDKKY 135
Query: 160 LEKERGAVLEEYRGNRNASG 179
E+ER AV E R G
Sbjct: 136 AERERNAVNAELTMARTRDG 155
>pdb|3EOQ|A Chain A, The Crystal Structure Of Putative Zinc Protease Beta-
Subunit From Thermus Thermophilus Hb8
pdb|3EOQ|B Chain B, The Crystal Structure Of Putative Zinc Protease Beta-
Subunit From Thermus Thermophilus Hb8
Length = 406
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 61/234 (26%), Positives = 101/234 (43%), Gaps = 24/234 (10%)
Query: 43 LDNGLFYYVRCNSKPRMRA-ALALAVKAGSVLEEEHERGVAHIVEHLAFSATEKYTNHDI 101
L NGL V P R+ AL VK G+ E + E GV+H +EH F E +
Sbjct: 7 LRNGL--RVIAEVVPGARSVALGYFVKTGARDETKEESGVSHFLEHXVFKGPEDXDALAV 64
Query: 102 IKFLESIGAEFGACQNAVTSADETVYELFVPVDKPELLSRAISVLAEFSTEVR--VSKDD 159
+ + GA++ NA TS + TVY V PE A +L F+ +R + ++D
Sbjct: 65 NRAFDRXGAQY----NAFTSEEATVYYGAV---LPEF---AYDLLGLFAKLLRPALREED 114
Query: 160 LEKERGAVLEEYRGNRNASGRMQDAHW--VLMMEGSKYAECLPIGLEKVIRTVSSDTVKR 217
+ E+ +LEE ++ G W +G + +G + I ++ +
Sbjct: 115 FQTEKLVILEEIARYQDRPG-FXAYEWARARFFQGHPLGNSV-LGTRESITALTREGXAA 172
Query: 218 FYQKWYRLQNMAVIAVG--DFPDTKGVVELINTHF--GQKKSATDPPVIPKFPV 267
++++ Y +N + A G DF E + + G+ + A PP+ P F V
Sbjct: 173 YHRRRYLPKNXVLAATGRVDFDRLLAEAERLTEAWPEGEAERAY-PPLTPAFGV 225
>pdb|3QZ2|A Chain A, The Structure Of Cysteine-Free Human Insulin Degrading
Enzyme
pdb|3QZ2|B Chain B, The Structure Of Cysteine-Free Human Insulin Degrading
Enzyme
pdb|4DTT|A Chain A, Crystal Structure Of Human Insulin Degrading Enzyme (ide)
In Complex With Compund 41367
pdb|4DTT|B Chain B, Crystal Structure Of Human Insulin Degrading Enzyme (ide)
In Complex With Compund 41367
Length = 990
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 56/226 (24%), Positives = 94/226 (41%), Gaps = 28/226 (12%)
Query: 60 RAALALAVKAGSVLEEEHERGVAHIVEHLAFSATEKY-TNHDIIKFLESIGAEFGACQNA 118
+++ AL V GS+ + + G++H +EH+ F T+KY ++ +FL +E NA
Sbjct: 56 KSSAALDVHIGSLSDPPNIAGLSHFLEHMLFLGTKKYPKENEYSQFL----SEHAGSSNA 111
Query: 119 VTSADETVYELFVPVDKPELLSRAISVLAEFSTEVRVSKDDLEKERGAVLEEYRGNRNAS 178
TS + T Y V E L A+ A+F + ++E AV E+ N
Sbjct: 112 FTSGEHTNYYFDV---SHEHLEGALDRFAQFFLSPLFDESAKDREVNAVDSEHEKN---- 164
Query: 179 GRMQDAHWVLMMEG---------SKYAECLPIGLEKVIRTVSSDTVK---RFYQKWYRLQ 226
M DA + +E SK+ LE D + +F+ +Y
Sbjct: 165 -VMNDAWRLFQLEKATGNPKHPFSKFGTGNKYTLETRPNQEGIDVRQELLKFHSAYYSSN 223
Query: 227 NMAVIAVGDFPDTKGVVELINTHFGQKKSATDPPVIPKFPVPSHQE 272
MAV+ +G + L+ F + ++ P +P+FP QE
Sbjct: 224 LMAVVVLGR-ESLDDLTNLVVKLFSEVENKNVP--LPEFPEHPFQE 266
>pdb|1BGY|B Chain B, Cytochrome Bc1 Complex From Bovine
pdb|1BGY|N Chain N, Cytochrome Bc1 Complex From Bovine
pdb|1BE3|B Chain B, Cytochrome Bc1 Complex From Bovine
pdb|1L0L|B Chain B, Structure Of Bovine Mitochondrial Cytochrome Bc1 Complex
With A Bound Fungicide Famoxadone
pdb|1L0N|B Chain B, Native Structure Of Bovine Mitochondrial Cytochrome Bc1
Complex
pdb|1NTK|B Chain B, Crystal Structure Of Mitochondrial Cytochrome Bc1 In
Complex With Antimycin A1
pdb|1NTM|B Chain B, Crystal Structure Of Mitochondrial Cytochrome Bc1 Complex
At 2.4 Angstrom
pdb|1NTZ|B Chain B, Crystal Structure Of Mitochondrial Cytochrome Bc1 Complex
Bound With Ubiquinone
pdb|1NU1|B Chain B, Crystal Structure Of Mitochondrial Cytochrome Bc1
Complexed With 2- Nonyl-4-Hydroxyquinoline N-Oxide
(Nqno)
pdb|1PP9|B Chain B, Bovine Cytochrome Bc1 Complex With Stigmatellin Bound
pdb|1PP9|O Chain O, Bovine Cytochrome Bc1 Complex With Stigmatellin Bound
pdb|1PPJ|B Chain B, Bovine Cytochrome Bc1 Complex With Stigmatellin And
Antimycin
pdb|1PPJ|O Chain O, Bovine Cytochrome Bc1 Complex With Stigmatellin And
Antimycin
pdb|2A06|B Chain B, Bovine Cytochrome Bc1 Complex With Stigmatellin Bound
pdb|2A06|O Chain O, Bovine Cytochrome Bc1 Complex With Stigmatellin Bound
pdb|1SQV|B Chain B, Crystal Structure Analysis Of Bovine Bc1 With Uhdbt
pdb|1SQX|B Chain B, Crystal Structure Analysis Of Bovine Bc1 With Stigmatellin
A
pdb|1SQQ|B Chain B, Crystal Structure Analysis Of Bovine Bc1 With Methoxy
Acrylate Stilbene (Moas)
pdb|2FYU|B Chain B, Crystal Structure Of Bovine Heart Mitochondrial Bc1 With
Jg144 Inhibitor
pdb|2YBB|B Chain B, Fitted Model For Bovine Mitochondrial Supercomplex
I1iii2iv1 By Single Particle Cryo-Em (Emd-1876)
pdb|2YBB|BB Chain b, Fitted Model For Bovine Mitochondrial Supercomplex
I1iii2iv1 By Single Particle Cryo-Em (Emd-1876)
Length = 439
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 51/216 (23%), Positives = 92/216 (42%), Gaps = 19/216 (8%)
Query: 34 QPFGVDYGRLDNGLFYYVRCNSKPRMRAALALAVKAGSVLEEEHERGVAHIVEHLAFSAT 93
P +++ RL NGL N P R + L +KAGS E + G +H++ + T
Sbjct: 20 HPQDLEFTRLPNGLVIASLENYAPASR--IGLFIKAGSRYENSNNLGTSHLLRLASSLTT 77
Query: 94 EKYTNHDIIKFLESIGAEFGACQNAVTSADETV-YELFVPVDKPELLSRAISVLAEFSTE 152
+ ++ I + +E++G + +VTS E + Y + E L + +L EF
Sbjct: 78 KGASSFKITRGIEAVGGKL-----SVTSTRENMAYTV-------ECLRDDVDILMEFLLN 125
Query: 153 VRVSKDDLEKERGAVLEEYRGNRNASGRMQDAHWVLMMEGSKYAECLPIGL---EKVIRT 209
V + + E A+ + R ++ + + AH + + + Y L L + I
Sbjct: 126 VTTAPEFRRWEVAALQPQLRIDKAVALQNPQAHVIENLHAAAYRNALANSLYCPDYRIGK 185
Query: 210 VSSDTVKRFYQKWYRLQNMAVIAVG-DFPDTKGVVE 244
V+ + + Q + MA+I +G P K V E
Sbjct: 186 VTPVELHDYVQNHFTSARMALIGLGVSHPVLKQVAE 221
>pdb|1SQB|B Chain B, Crystal Structure Analysis Of Bovine Bc1 With Azoxystrobin
pdb|1SQP|B Chain B, Crystal Structure Analysis Of Bovine Bc1 With Myxothiazol
Length = 453
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 51/216 (23%), Positives = 92/216 (42%), Gaps = 19/216 (8%)
Query: 34 QPFGVDYGRLDNGLFYYVRCNSKPRMRAALALAVKAGSVLEEEHERGVAHIVEHLAFSAT 93
P +++ RL NGL N P R + L +KAGS E + G +H++ + T
Sbjct: 34 HPQDLEFTRLPNGLVIASLENYAPASR--IGLFIKAGSRYENSNNLGTSHLLRLASSLTT 91
Query: 94 EKYTNHDIIKFLESIGAEFGACQNAVTSADETV-YELFVPVDKPELLSRAISVLAEFSTE 152
+ ++ I + +E++G + +VTS E + Y + E L + +L EF
Sbjct: 92 KGASSFKITRGIEAVGGKL-----SVTSTRENMAYTV-------ECLRDDVDILMEFLLN 139
Query: 153 VRVSKDDLEKERGAVLEEYRGNRNASGRMQDAHWVLMMEGSKYAECLPIGL---EKVIRT 209
V + + E A+ + R ++ + + AH + + + Y L L + I
Sbjct: 140 VTTAPEFRRWEVAALQPQLRIDKAVALQNPQAHVIENLHAAAYRNALANSLYCPDYRIGK 199
Query: 210 VSSDTVKRFYQKWYRLQNMAVIAVG-DFPDTKGVVE 244
V+ + + Q + MA+I +G P K V E
Sbjct: 200 VTPVELHDYVQNHFTSARMALIGLGVSHPVLKQVAE 235
>pdb|1HR6|A Chain A, Yeast Mitochondrial Processing Peptidase
pdb|1HR6|C Chain C, Yeast Mitochondrial Processing Peptidase
pdb|1HR6|E Chain E, Yeast Mitochondrial Processing Peptidase
pdb|1HR6|G Chain G, Yeast Mitochondrial Processing Peptidase
pdb|1HR7|A Chain A, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
pdb|1HR7|C Chain C, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
pdb|1HR7|E Chain E, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
pdb|1HR7|G Chain G, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
pdb|1HR8|A Chain A, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Cytochrome C Oxidase Iv Signal Peptide
pdb|1HR8|C Chain C, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Cytochrome C Oxidase Iv Signal Peptide
pdb|1HR8|E Chain E, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Cytochrome C Oxidase Iv Signal Peptide
pdb|1HR8|G Chain G, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Cytochrome C Oxidase Iv Signal Peptide
pdb|1HR9|A Chain A, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Malate Dehydrogenase Signal Peptide
pdb|1HR9|C Chain C, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Malate Dehydrogenase Signal Peptide
pdb|1HR9|E Chain E, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Malate Dehydrogenase Signal Peptide
pdb|1HR9|G Chain G, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Malate Dehydrogenase Signal Peptide
Length = 475
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 56/236 (23%), Positives = 103/236 (43%), Gaps = 40/236 (16%)
Query: 43 LDNGLFYYVRCNSKPRMRAALALAVKAGSVLEEEHERGVAHIVEHLAFSATEKYTNHDII 102
L NGL V ++ P +AL L + AGS E + +G HI++ LAF +TE +
Sbjct: 11 LANGL--KVATSNTPGHFSALGLYIDAGSRFEGRNLKGCTHILDRLAFKSTEHVEGRAMA 68
Query: 103 KFLESIGAEFGACQNAVTSADETVYELFVPVDKPELLSRAISVLAEFSTEVRVSKDDLEK 162
+ LE +G + +S + +Y+ V + + + + +++E ++++ +L++
Sbjct: 69 ETLELLGGNY----QCTSSRENLMYQASV---FNQDVGKMLQLMSETVRFPKITEQELQE 121
Query: 163 ERGAVLEEYRGNRNASGRMQDAHWV--------LMMEGSKYAECL------PIGLEKVIR 208
++ + EY D W+ L+ + E L P GL I
Sbjct: 122 QK--LSAEYE---------IDEVWMKPELVLPELLHTAAYSGETLGSPLICPRGL---IP 167
Query: 209 TVSSDTVKRFYQKWYRLQNMAVIAVGDFPDTKGVVELINTHFGQKKSATDPPVIPK 264
++S + + K+Y +N VG P K +EL + G +S T PP+ K
Sbjct: 168 SISKYYLLDYRNKFYTPENTVAAFVG-VPHEK-ALELTGKYLGDWQS-THPPITKK 220
>pdb|1QCR|B Chain B, Crystal Structure Of Bovine Mitochondrial Cytochrome Bc1
Complex, Alpha Carbon Atoms Only
Length = 423
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 51/216 (23%), Positives = 92/216 (42%), Gaps = 19/216 (8%)
Query: 34 QPFGVDYGRLDNGLFYYVRCNSKPRMRAALALAVKAGSVLEEEHERGVAHIVEHLAFSAT 93
P +++ RL NGL N P R + L +KAGS E + G +H++ + T
Sbjct: 4 HPQDLEFTRLPNGLVIASLENYAPASR--IGLFIKAGSRYENSNNLGTSHLLRLASSLTT 61
Query: 94 EKYTNHDIIKFLESIGAEFGACQNAVTSADETV-YELFVPVDKPELLSRAISVLAEFSTE 152
+ ++ I + +E++G + +VTS E + Y + E L + +L EF
Sbjct: 62 KGASSFKITRGIEAVGGKL-----SVTSTRENMAYTV-------ECLRDDVDILMEFLLN 109
Query: 153 VRVSKDDLEKERGAVLEEYRGNRNASGRMQDAHWVLMMEGSKYAECLPIGL---EKVIRT 209
V + + E A+ + R ++ + + AH + + + Y L L + I
Sbjct: 110 VTTAPEFRRWEVAALQPQLRIDKAVALQNPQAHVIENLHAAAYRNALANSLYCPDYRIGK 169
Query: 210 VSSDTVKRFYQKWYRLQNMAVIAVG-DFPDTKGVVE 244
V+ + + Q + MA+I +G P K V E
Sbjct: 170 VTPVELHDYVQNHFTSARMALIGLGVSHPVLKQVAE 205
>pdb|3E4Z|A Chain A, Crystal Structure Of Human Insulin Degrading Enzyme In
Complex With Insulin-Like Growth Factor Ii
pdb|3E4Z|B Chain B, Crystal Structure Of Human Insulin Degrading Enzyme In
Complex With Insulin-Like Growth Factor Ii
Length = 990
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 55/226 (24%), Positives = 94/226 (41%), Gaps = 28/226 (12%)
Query: 60 RAALALAVKAGSVLEEEHERGVAHIVEHLAFSATEKY-TNHDIIKFLESIGAEFGACQNA 118
+++ AL V GS+ + + G++H ++H+ F T+KY ++ +FL +E NA
Sbjct: 56 KSSAALDVHIGSLSDPPNIAGLSHFLQHMLFLGTKKYPKENEYSQFL----SEHAGSSNA 111
Query: 119 VTSADETVYELFVPVDKPELLSRAISVLAEFSTEVRVSKDDLEKERGAVLEEYRGNRNAS 178
TS + T Y V E L A+ A+F + ++E AV E+ N
Sbjct: 112 FTSGEHTNYYFDV---SHEHLEGALDRFAQFFLSPLFDESAKDREVNAVDSEHEKN---- 164
Query: 179 GRMQDAHWVLMMEG---------SKYAECLPIGLEKVIRTVSSDTVK---RFYQKWYRLQ 226
M DA + +E SK+ LE D + +F+ +Y
Sbjct: 165 -VMNDAWRLFQLEKATGNPKHPFSKFGTGNKYTLETRPNQEGIDVRQELLKFHSAYYSSN 223
Query: 227 NMAVIAVGDFPDTKGVVELINTHFGQKKSATDPPVIPKFPVPSHQE 272
MAV+ +G + L+ F + ++ P +P+FP QE
Sbjct: 224 LMAVVVLGR-ESLDDLTNLVVKLFSEVENKNVP--LPEFPEHPFQE 266
>pdb|3E4A|A Chain A, Human Ide-Inhibitor Complex At 2.6 Angstrom Resolution
pdb|3E4A|B Chain B, Human Ide-Inhibitor Complex At 2.6 Angstrom Resolution
pdb|2WK3|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Amyloid-Beta (1-42)
pdb|2WK3|B Chain B, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Amyloid-Beta (1-42)
Length = 1019
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 55/226 (24%), Positives = 94/226 (41%), Gaps = 28/226 (12%)
Query: 60 RAALALAVKAGSVLEEEHERGVAHIVEHLAFSATEKY-TNHDIIKFLESIGAEFGACQNA 118
+++ AL V GS+ + + G++H ++H+ F T+KY ++ +FL +E NA
Sbjct: 85 KSSAALDVHIGSLSDPPNIAGLSHFLQHMLFLGTKKYPKENEYSQFL----SEHAGSSNA 140
Query: 119 VTSADETVYELFVPVDKPELLSRAISVLAEFSTEVRVSKDDLEKERGAVLEEYRGNRNAS 178
TS + T Y V E L A+ A+F + ++E AV E+ N
Sbjct: 141 FTSGEHTNYYFDV---SHEHLEGALDRFAQFFLSPLFDESAKDREVNAVDSEHEKN---- 193
Query: 179 GRMQDAHWVLMMEG---------SKYAECLPIGLEKVIRTVSSDTVK---RFYQKWYRLQ 226
M DA + +E SK+ LE D + +F+ +Y
Sbjct: 194 -VMNDAWRLFQLEKATGNPKHPFSKFGTGNKYTLETRPNQEGIDVRQELLKFHSAYYSSN 252
Query: 227 NMAVIAVGDFPDTKGVVELINTHFGQKKSATDPPVIPKFPVPSHQE 272
MAV+ +G + L+ F + ++ P +P+FP QE
Sbjct: 253 LMAVVVLGR-ESLDDLTNLVVKLFSEVENKNVP--LPEFPEHPFQE 295
>pdb|3HGZ|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Amylin
pdb|3HGZ|B Chain B, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Amylin
Length = 969
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 55/226 (24%), Positives = 94/226 (41%), Gaps = 28/226 (12%)
Query: 60 RAALALAVKAGSVLEEEHERGVAHIVEHLAFSATEKY-TNHDIIKFLESIGAEFGACQNA 118
+++ AL V GS+ + + G++H ++H+ F T+KY ++ +FL +E NA
Sbjct: 43 KSSAALDVHIGSLSDPPNIAGLSHFLQHMLFLGTKKYPKENEYSQFL----SEHAGSSNA 98
Query: 119 VTSADETVYELFVPVDKPELLSRAISVLAEFSTEVRVSKDDLEKERGAVLEEYRGNRNAS 178
TS + T Y V E L A+ A+F + ++E AV E+ N
Sbjct: 99 FTSGEHTNYYFDV---SHEHLEGALDRFAQFFLSPLFDESAKDREVNAVDSEHEKN---- 151
Query: 179 GRMQDAHWVLMMEG---------SKYAECLPIGLEKVIRTVSSDTVK---RFYQKWYRLQ 226
M DA + +E SK+ LE D + +F+ +Y
Sbjct: 152 -VMNDAWRLFQLEKATGNPKHPFSKFGTGNKYTLETRPNQEGIDVRQELLKFHSAYYSSN 210
Query: 227 NMAVIAVGDFPDTKGVVELINTHFGQKKSATDPPVIPKFPVPSHQE 272
MAV+ +G + L+ F + ++ P +P+FP QE
Sbjct: 211 LMAVVVLGR-ESLDDLTNLVVKLFSEVENKNVP--LPEFPEHPFQE 253
>pdb|2WBY|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Insulin
pdb|2WBY|B Chain B, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Insulin
pdb|2WC0|A Chain A, Crystal Structure Of Human Insulin Degrading Enzyme In
Complex With Iodinated Insulin
pdb|2WC0|B Chain B, Crystal Structure Of Human Insulin Degrading Enzyme In
Complex With Iodinated Insulin
pdb|3H44|A Chain A, Crystal Structure Of Insulin Degrading Enzyme In Complex
With Macrophage Inflammatory Protein 1 Alpha
pdb|3H44|B Chain B, Crystal Structure Of Insulin Degrading Enzyme In Complex
With Macrophage Inflammatory Protein 1 Alpha
pdb|3OFI|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Ubiquitin
pdb|3OFI|B Chain B, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Ubiquitin
pdb|3N56|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme (Ide)
In Complex With Human B-Type Natriuretic Peptide (Bnp)
pdb|3N56|B Chain B, Crystal Structure Of Human Insulin-Degrading Enzyme (Ide)
In Complex With Human B-Type Natriuretic Peptide (Bnp)
pdb|3N57|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme (Ide)
In Complex With Human Atrial Natriuretic Peptide (Anp)
pdb|3N57|B Chain B, Crystal Structure Of Human Insulin-Degrading Enzyme (Ide)
In Complex With Human Atrial Natriuretic Peptide (Anp)
pdb|2YPU|A Chain A, Human Insulin Degrading Enzyme E111q In Complex With
Inhibitor Compound 41367
pdb|2YPU|B Chain B, Human Insulin Degrading Enzyme E111q In Complex With
Inhibitor Compound 41367
Length = 990
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 55/226 (24%), Positives = 94/226 (41%), Gaps = 28/226 (12%)
Query: 60 RAALALAVKAGSVLEEEHERGVAHIVEHLAFSATEKY-TNHDIIKFLESIGAEFGACQNA 118
+++ AL V GS+ + + G++H ++H+ F T+KY ++ +FL +E NA
Sbjct: 56 KSSAALDVHIGSLSDPPNIAGLSHFLQHMLFLGTKKYPKENEYSQFL----SEHAGSSNA 111
Query: 119 VTSADETVYELFVPVDKPELLSRAISVLAEFSTEVRVSKDDLEKERGAVLEEYRGNRNAS 178
TS + T Y V E L A+ A+F + ++E AV E+ N
Sbjct: 112 FTSGEHTNYYFDV---SHEHLEGALDRFAQFFLSPLFDESAKDREVNAVDSEHEKN---- 164
Query: 179 GRMQDAHWVLMMEG---------SKYAECLPIGLEKVIRTVSSDTVK---RFYQKWYRLQ 226
M DA + +E SK+ LE D + +F+ +Y
Sbjct: 165 -VMNDAWRLFQLEKATGNPKHPFSKFGTGNKYTLETRPNQEGIDVRQELLKFHSAYYSSN 223
Query: 227 NMAVIAVGDFPDTKGVVELINTHFGQKKSATDPPVIPKFPVPSHQE 272
MAV+ +G + L+ F + ++ P +P+FP QE
Sbjct: 224 LMAVVVLGR-ESLDDLTNLVVKLFSEVENKNVP--LPEFPEHPFQE 266
>pdb|3CWW|A Chain A, Crystal Structure Of Ide-Bradykinin Complex
pdb|3CWW|B Chain B, Crystal Structure Of Ide-Bradykinin Complex
Length = 990
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 55/226 (24%), Positives = 94/226 (41%), Gaps = 28/226 (12%)
Query: 60 RAALALAVKAGSVLEEEHERGVAHIVEHLAFSATEKY-TNHDIIKFLESIGAEFGACQNA 118
+++ AL V GS+ + + G++H ++H+ F T+KY ++ +FL +E NA
Sbjct: 56 KSSAALDVHIGSLSDPPNIAGLSHFLQHMLFLGTKKYPKENEYSQFL----SEHAGSSNA 111
Query: 119 VTSADETVYELFVPVDKPELLSRAISVLAEFSTEVRVSKDDLEKERGAVLEEYRGNRNAS 178
TS + T Y V E L A+ A+F + ++E AV E+ N
Sbjct: 112 FTSGEHTNYYFDV---SHEHLEGALDRFAQFFLSPLFDESAKDREVNAVDSEHEKN---- 164
Query: 179 GRMQDAHWVLMMEG---------SKYAECLPIGLEKVIRTVSSDTVK---RFYQKWYRLQ 226
M DA + +E SK+ LE D + +F+ +Y
Sbjct: 165 -VMNDAWRLFQLEKATGNPKHPFSKFGTGNKYTLETRPNQEGIDVRQELLKFHSAYYSSN 223
Query: 227 NMAVIAVGDFPDTKGVVELINTHFGQKKSATDPPVIPKFPVPSHQE 272
MAV+ +G + L+ F + ++ P +P+FP QE
Sbjct: 224 LMAVVVLGR-ESLDDLTNLVVKLFSEVENKNVP--LPEFPEHPFQE 266
>pdb|2JG4|A Chain A, Substrate-Free Ide Structure In Its Closed Conformation
pdb|2JG4|B Chain B, Substrate-Free Ide Structure In Its Closed Conformation
Length = 990
Score = 39.3 bits (90), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 56/226 (24%), Positives = 92/226 (40%), Gaps = 28/226 (12%)
Query: 60 RAALALAVKAGSVLEEEHERGVAHIVEHLAFSATEKY-TNHDIIKFLESIGAEFGACQNA 118
+++ AL V GS+ + + G++H EH+ F T+KY ++ +FL +E NA
Sbjct: 56 KSSAALDVHIGSLSDPPNIAGLSHFCEHMLFLGTKKYPKENEYSQFL----SEHAGSSNA 111
Query: 119 VTSADETVYELFVPVDKPELLSRAISVLAEFSTEVRVSKDDLEKERGAVLEEYRGNRNAS 178
TS + T Y V E L A+ A+F + ++E AV E+ N
Sbjct: 112 FTSGEHTNYYFDV---SHEHLEGALDRFAQFFLCPLFDESCKDREVNAVDSEHEKN---- 164
Query: 179 GRMQDAHWVLMMEG---------SKYAECLPIGLEKVIRTVSSDTVK---RFYQKWYRLQ 226
M DA + +E SK+ LE D + +F+ +Y
Sbjct: 165 -VMNDAWRLFQLEKATGNPKHPFSKFGTGNKYTLETRPNQEGIDVRQELLKFHSAYYSSN 223
Query: 227 NMAVIAVGDFPDTKGVVELINTHFGQKKSATDPPVIPKFPVPSHQE 272
MAV +G + L+ F + ++ P +P+FP QE
Sbjct: 224 LMAVCVLGR-ESLDDLTNLVVKLFSEVENKNVP--LPEFPEHPFQE 266
>pdb|2G47|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Amyloid-Beta (1-40)
pdb|2G47|B Chain B, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Amyloid-Beta (1-40)
pdb|2G48|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Amylin
pdb|2G48|B Chain B, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Amylin
pdb|2G49|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Glucagon
pdb|2G49|B Chain B, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Glucagon
pdb|2G54|A Chain A, Crystal Structure Of Zn-Bound Human Insulin-Degrading
Enzyme In Complex With Insulin B Chain
pdb|2G54|B Chain B, Crystal Structure Of Zn-Bound Human Insulin-Degrading
Enzyme In Complex With Insulin B Chain
pdb|2G56|A Chain A, Crystal Structure Of Human Insulin-degrading Enzyme In
Complex With Insulin B Chain
pdb|2G56|B Chain B, Crystal Structure Of Human Insulin-degrading Enzyme In
Complex With Insulin B Chain
pdb|2JBU|A Chain A, Crystal Structure Of Human Insulin Degrading Enzyme
Complexed With Co-Purified Peptides.
pdb|2JBU|B Chain B, Crystal Structure Of Human Insulin Degrading Enzyme
Complexed With Co-Purified Peptides.
pdb|3E50|A Chain A, Crystal Structure Of Human Insulin Degrading Enzyme In
Complex With Transforming Growth Factor-Alpha
pdb|3E50|B Chain B, Crystal Structure Of Human Insulin Degrading Enzyme In
Complex With Transforming Growth Factor-Alpha
Length = 990
Score = 37.7 bits (86), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 55/226 (24%), Positives = 92/226 (40%), Gaps = 28/226 (12%)
Query: 60 RAALALAVKAGSVLEEEHERGVAHIVEHLAFSATEKY-TNHDIIKFLESIGAEFGACQNA 118
+++ AL V GS+ + + G++H +H+ F T+KY ++ +FL +E NA
Sbjct: 56 KSSAALDVHIGSLSDPPNIAGLSHFCQHMLFLGTKKYPKENEYSQFL----SEHAGSSNA 111
Query: 119 VTSADETVYELFVPVDKPELLSRAISVLAEFSTEVRVSKDDLEKERGAVLEEYRGNRNAS 178
TS + T Y V E L A+ A+F + ++E AV E+ N
Sbjct: 112 FTSGEHTNYYFDV---SHEHLEGALDRFAQFFLCPLFDESCKDREVNAVDSEHEKN---- 164
Query: 179 GRMQDAHWVLMMEG---------SKYAECLPIGLEKVIRTVSSDTVK---RFYQKWYRLQ 226
M DA + +E SK+ LE D + +F+ +Y
Sbjct: 165 -VMNDAWRLFQLEKATGNPKHPFSKFGTGNKYTLETRPNQEGIDVRQELLKFHSAYYSSN 223
Query: 227 NMAVIAVGDFPDTKGVVELINTHFGQKKSATDPPVIPKFPVPSHQE 272
MAV +G + L+ F + ++ P +P+FP QE
Sbjct: 224 LMAVCVLGR-ESLDDLTNLVVKLFSEVENKNVP--LPEFPEHPFQE 266
>pdb|3P7L|A Chain A, Rat Insulin Degrading Enzyme (Insulysin)
Length = 978
Score = 37.7 bits (86), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 55/226 (24%), Positives = 91/226 (40%), Gaps = 28/226 (12%)
Query: 60 RAALALAVKAGSVLEEEHERGVAHIVEHLAFSATEKY-TNHDIIKFLESIGAEFGACQNA 118
+++ AL V GS+ + + G++H EH+ F T+KY ++ +FL +E NA
Sbjct: 44 KSSAALDVHIGSLSDPPNIPGLSHFCEHMLFLGTKKYPKENEYSQFL----SEHAGSSNA 99
Query: 119 VTSADETVYELFVPVDKPELLSRAISVLAEFSTEVRVSKDDLEKERGAVLEEYRGNRNAS 178
TS + T Y V E L A+ A+F ++E AV E+ N
Sbjct: 100 FTSGEHTNYYFDV---SHEHLEGALDRFAQFFLCPLFDASCKDREVNAVDSEHEKN---- 152
Query: 179 GRMQDAHWVLMMEG---------SKYAECLPIGLEKVIRTVSSDT---VKRFYQKWYRLQ 226
M DA + +E SK+ LE D + +F+ +Y
Sbjct: 153 -VMNDAWRLFQLEKATGNPKHPFSKFGTGNKYTLETRPNQEGIDVREELLKFHSTYYSSN 211
Query: 227 NMAVIAVGDFPDTKGVVELINTHFGQKKSATDPPVIPKFPVPSHQE 272
MA+ +G + L+ F + ++ P +P+FP QE
Sbjct: 212 LMAICVLGR-ESLDDLTNLVVKLFSEVENKNVP--LPEFPEHPFQE 254
>pdb|3TUV|A Chain A, Crystal Structure Of Insulysin With Bound Atp
Length = 1019
Score = 37.7 bits (86), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 55/226 (24%), Positives = 91/226 (40%), Gaps = 28/226 (12%)
Query: 60 RAALALAVKAGSVLEEEHERGVAHIVEHLAFSATEKY-TNHDIIKFLESIGAEFGACQNA 118
+++ AL V GS+ + + G++H EH+ F T+KY ++ +FL +E NA
Sbjct: 85 KSSAALDVHIGSLSDPPNIPGLSHFCEHMLFLGTKKYPKENEYSQFL----SEHAGSSNA 140
Query: 119 VTSADETVYELFVPVDKPELLSRAISVLAEFSTEVRVSKDDLEKERGAVLEEYRGNRNAS 178
TS + T Y V E L A+ A+F ++E AV E+ N
Sbjct: 141 FTSGEHTNYYFDV---SHEHLEGALDRFAQFFLCPLFDASCKDREVNAVDSEHEKN---- 193
Query: 179 GRMQDAHWVLMMEG---------SKYAECLPIGLEKVIRTVSSDT---VKRFYQKWYRLQ 226
M DA + +E SK+ LE D + +F+ +Y
Sbjct: 194 -VMNDAWRLFQLEKATGNPKHPFSKFGTGNKYTLETRPNQEGIDVREELLKFHSTYYSSN 252
Query: 227 NMAVIAVGDFPDTKGVVELINTHFGQKKSATDPPVIPKFPVPSHQE 272
MA+ +G + L+ F + ++ P +P+FP QE
Sbjct: 253 LMAICVLGR-ESLDDLTNLVVKLFSEVENKNVP--LPEFPEHPFQE 295
>pdb|3AMJ|B Chain B, The Crystal Structure Of The Heterodimer Of M16b Peptidase
From Sphingomonas Sp. A1
pdb|3AMJ|D Chain D, The Crystal Structure Of The Heterodimer Of M16b Peptidase
From Sphingomonas Sp. A1
Length = 424
Score = 36.2 bits (82), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 75/366 (20%), Positives = 136/366 (37%), Gaps = 57/366 (15%)
Query: 531 NGMRVCY---KCTDFLDDQVLFTGFSYGGLSELPESEYLSCSMGSTI--AGE-IGVFGYR 584
+G +V Y + LD QV F G + P + SM +++ AG G
Sbjct: 11 SGAQVYYVENRTLPMLDVQVDFDA----GSAREPADQVGVASMTASLMDAGTGSGKSALD 66
Query: 585 PSMLMDMLA--GKRVEGGTKVGAYMRTFSGDCSPSDLETALQLVYQLFTTNVAPGEEEVE 642
+ + D LA G R+ GG + + SP++ +AL ++ + P +E
Sbjct: 67 ENAIADRLADIGARLGGGAEADRASFSLRVLSSPAERNSALTILRDILAHPTFPAPV-LE 125
Query: 643 IVMQMAEEVIRAQERDPYTAFANRVKEINYGNSYFFRPIRISDLQKVDPLKACDYFNSCF 702
A +R + P + R E+ YG + ++ LQK+ + + + +
Sbjct: 126 RERARAIAGLREAQTQPGSILGRRFTELAYGKHPYGHVSSVATLQKISRDQLVSFHRTHY 185
Query: 703 KDPSTFTVVIVGNIDPSNGIPLILQYLGGIPK----PPEPILHFNRDNLKGLPFTFPSSI 758
T V +VG+I + + Q +P PP P R +
Sbjct: 186 V-ARTAVVTLVGDITRAEAETIAQQLTADLPAGATLPPLPDPAMPRATV----------- 233
Query: 759 IREVVRSPMVEAQCSVQL---------CFPVELKNGTMVEEINYVGFLSKLLETKMMQVL 809
E + +P +A ++ + FP+ + N + GF E+++M+ +
Sbjct: 234 --ERIANPATQAHIAIGMPTLKRGDPDFFPLVVGN----YALGGGGF-----ESRLMKEI 282
Query: 810 RFKHGQIYSASVSVFLGGNKHSRTGDVRGDISINFSCDPEISFKLVDLALDEISRLQKEG 869
R K G Y G + G I F E + + V +A D + +EG
Sbjct: 283 RDKRGLSY--------GAYSYFSPQKSMGLFQIGFETRAEKADEAVQVANDTLDAFLREG 334
Query: 870 PSDEDV 875
P+D ++
Sbjct: 335 PTDAEL 340
>pdb|3P7O|A Chain A, Rat Insulin Degrading Enzyme (Insulysin) E111f Mutant With
Two Bound Peptides
Length = 1019
Score = 34.7 bits (78), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 54/226 (23%), Positives = 90/226 (39%), Gaps = 28/226 (12%)
Query: 60 RAALALAVKAGSVLEEEHERGVAHIVEHLAFSATEKY-TNHDIIKFLESIGAEFGACQNA 118
+++ AL V GS+ + + G++H H+ F T+KY ++ +FL +E NA
Sbjct: 85 KSSAALDVHIGSLSDPPNIPGLSHFCFHMLFLGTKKYPKENEYSQFL----SEHAGSSNA 140
Query: 119 VTSADETVYELFVPVDKPELLSRAISVLAEFSTEVRVSKDDLEKERGAVLEEYRGNRNAS 178
TS + T Y V E L A+ A+F ++E AV E+ N
Sbjct: 141 FTSGEHTNYYFDV---SHEHLEGALDRFAQFFLCPLFDASCKDREVNAVDSEHEKN---- 193
Query: 179 GRMQDAHWVLMMEG---------SKYAECLPIGLEKVIRTVSSDT---VKRFYQKWYRLQ 226
M DA + +E SK+ LE D + +F+ +Y
Sbjct: 194 -VMNDAWRLFQLEKATGNPKHPFSKFGTGNKYTLETRPNQEGIDVREELLKFHSTYYSSN 252
Query: 227 NMAVIAVGDFPDTKGVVELINTHFGQKKSATDPPVIPKFPVPSHQE 272
MA+ +G + L+ F + ++ P +P+FP QE
Sbjct: 253 LMAICVLGR-ESLDDLTNLVVKLFSEVENKNVP--LPEFPEHPFQE 295
>pdb|3QHN|A Chain A, Crystal Analysis Of The Complex Structure,
E201a-Cellotetraose, Of Endocellulase From Pyrococcus
Horikoshii
pdb|3QHN|B Chain B, Crystal Analysis Of The Complex Structure,
E201a-Cellotetraose, Of Endocellulase From Pyrococcus
Horikoshii
pdb|3QHN|C Chain C, Crystal Analysis Of The Complex Structure,
E201a-Cellotetraose, Of Endocellulase From Pyrococcus
Horikoshii
Length = 458
Score = 33.1 bits (74), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 48/119 (40%), Gaps = 26/119 (21%)
Query: 13 KKHGFRSLKLVSFDLNEELGEQPFGVDYGRLDNGLFYYVRCNSKPRMRAALALAV----- 67
K GF +++L + + G QP G+DY + P +R +L +
Sbjct: 94 KSLGFNAIRLPFCTESVKPGTQPIGIDYSK-------------NPDLRGLDSLQIMEKII 140
Query: 68 -KAGS----VLEEEHERGVAHIVEHLAFSATEKYTNHDIIKFLESIGAEFGACQNAVTS 121
KAG VL + H G HI E L + TE ++ D I + FG N + +
Sbjct: 141 KKAGDLGIFVLLDYHRIGCTHI-EPLWY--TEDFSEEDFINTWIEVAKRFGKYWNVIGA 196
>pdb|3QHM|A Chain A, Crystal Analysis Of The Complex Structure,
E342a-Cellotetraose, Of Endocellulase From Pyrococcus
Horikoshii
pdb|3QHM|B Chain B, Crystal Analysis Of The Complex Structure,
E342a-Cellotetraose, Of Endocellulase From Pyrococcus
Horikoshii
pdb|3QHM|C Chain C, Crystal Analysis Of The Complex Structure,
E342a-Cellotetraose, Of Endocellulase From Pyrococcus
Horikoshii
Length = 458
Score = 33.1 bits (74), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 48/119 (40%), Gaps = 26/119 (21%)
Query: 13 KKHGFRSLKLVSFDLNEELGEQPFGVDYGRLDNGLFYYVRCNSKPRMRAALALAV----- 67
K GF +++L + + G QP G+DY + P +R +L +
Sbjct: 94 KSLGFNAIRLPFCTESVKPGTQPIGIDYSK-------------NPDLRGLDSLQIMEKII 140
Query: 68 -KAGS----VLEEEHERGVAHIVEHLAFSATEKYTNHDIIKFLESIGAEFGACQNAVTS 121
KAG VL + H G HI E L + TE ++ D I + FG N + +
Sbjct: 141 KKAGDLGIFVLLDYHRIGCTHI-EPLWY--TEDFSEEDFINTWIEVAKRFGKYWNVIGA 196
>pdb|3AXX|A Chain A, Functional Analysis Of Hyperthermophilic Endocellulase
From The Archaeon Pyrococcus Horikoshii
pdb|3AXX|B Chain B, Functional Analysis Of Hyperthermophilic Endocellulase
From The Archaeon Pyrococcus Horikoshii
pdb|3AXX|C Chain C, Functional Analysis Of Hyperthermophilic Endocellulase
From The Archaeon Pyrococcus Horikoshii
Length = 458
Score = 33.1 bits (74), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 48/119 (40%), Gaps = 26/119 (21%)
Query: 13 KKHGFRSLKLVSFDLNEELGEQPFGVDYGRLDNGLFYYVRCNSKPRMRAALALAV----- 67
K GF +++L + + G QP G+DY + P +R +L +
Sbjct: 94 KSLGFNAIRLPFCTESVKPGTQPIGIDYSK-------------NPDLRGLDSLQIMEKII 140
Query: 68 -KAGS----VLEEEHERGVAHIVEHLAFSATEKYTNHDIIKFLESIGAEFGACQNAVTS 121
KAG VL + H G HI E L + TE ++ D I + FG N + +
Sbjct: 141 KKAGDLGIFVLLDYHRIGCTHI-EPLWY--TEDFSEEDFINTWIEVAKRFGKYWNVIGA 196
>pdb|2ZUM|A Chain A, Functional Analysis Of Hyperthermophilic Endocellulase
From The Archaeon Pyrococcus Horikoshii
pdb|2ZUN|A Chain A, Functional Analysis Of Hyperthermophilic Endocellulase
From The Archaeon Pyrococcus Horikoshii
pdb|2ZUN|B Chain B, Functional Analysis Of Hyperthermophilic Endocellulase
From The Archaeon Pyrococcus Horikoshii
pdb|2ZUN|C Chain C, Functional Analysis Of Hyperthermophilic Endocellulase
From The Archaeon Pyrococcus Horikoshii
Length = 458
Score = 33.1 bits (74), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 48/119 (40%), Gaps = 26/119 (21%)
Query: 13 KKHGFRSLKLVSFDLNEELGEQPFGVDYGRLDNGLFYYVRCNSKPRMRAALALAV----- 67
K GF +++L + + G QP G+DY + P +R +L +
Sbjct: 94 KSLGFNAIRLPFCTESVKPGTQPIGIDYSK-------------NPDLRGLDSLQIMEKII 140
Query: 68 -KAGS----VLEEEHERGVAHIVEHLAFSATEKYTNHDIIKFLESIGAEFGACQNAVTS 121
KAG VL + H G HI E L + TE ++ D I + FG N + +
Sbjct: 141 KKAGDLGIFVLLDYHRIGCTHI-EPLWY--TEDFSEEDFINTWIEVAKRFGKYWNVIGA 196
>pdb|3QHO|A Chain A, Crystal Analysis Of The Complex Structure,
Y299f-Cellotetraose, Of Endocellulase From Pyrococcus
Horikoshii
pdb|3QHO|B Chain B, Crystal Analysis Of The Complex Structure,
Y299f-Cellotetraose, Of Endocellulase From Pyrococcus
Horikoshii
pdb|3QHO|C Chain C, Crystal Analysis Of The Complex Structure,
Y299f-Cellotetraose, Of Endocellulase From Pyrococcus
Horikoshii
Length = 458
Score = 33.1 bits (74), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 48/119 (40%), Gaps = 26/119 (21%)
Query: 13 KKHGFRSLKLVSFDLNEELGEQPFGVDYGRLDNGLFYYVRCNSKPRMRAALALAV----- 67
K GF +++L + + G QP G+DY + P +R +L +
Sbjct: 94 KSLGFNAIRLPFCTESVKPGTQPIGIDYSK-------------NPDLRGLDSLQIMEKII 140
Query: 68 -KAGS----VLEEEHERGVAHIVEHLAFSATEKYTNHDIIKFLESIGAEFGACQNAVTS 121
KAG VL + H G HI E L + TE ++ D I + FG N + +
Sbjct: 141 KKAGDLGIFVLLDYHRIGCTHI-EPLWY--TEDFSEEDFINTWIEVAKRFGKYWNVIGA 196
>pdb|4DM2|A Chain A, Contribution Of Disulfide Bond Toward Thermostability In
Hyperthermostable Endocellulase
pdb|4DM2|B Chain B, Contribution Of Disulfide Bond Toward Thermostability In
Hyperthermostable Endocellulase
pdb|4DM2|C Chain C, Contribution Of Disulfide Bond Toward Thermostability In
Hyperthermostable Endocellulase
Length = 377
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 48/119 (40%), Gaps = 26/119 (21%)
Query: 13 KKHGFRSLKLVSFDLNEELGEQPFGVDYGRLDNGLFYYVRCNSKPRMRAALALAV----- 67
K GF +++L + + G QP G+DY + P +R +L +
Sbjct: 61 KSLGFNAIRLPFCTESVKPGTQPIGIDYSK-------------NPDLRGLDSLQIMEKII 107
Query: 68 -KAGS----VLEEEHERGVAHIVEHLAFSATEKYTNHDIIKFLESIGAEFGACQNAVTS 121
KAG VL + H G HI E L + TE ++ D I + FG N + +
Sbjct: 108 KKAGDLGIFVLLDYHRIGCTHI-EPLWY--TEDFSEEDFINTWIEVAKRFGKYWNVIGA 163
>pdb|4DM1|A Chain A, Contribution Of Disulfide Bond Toward Thermostability In
Hyperthermostable Endocellulase
pdb|4DM1|B Chain B, Contribution Of Disulfide Bond Toward Thermostability In
Hyperthermostable Endocellulase
pdb|4DM1|C Chain C, Contribution Of Disulfide Bond Toward Thermostability In
Hyperthermostable Endocellulase
Length = 377
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 48/119 (40%), Gaps = 26/119 (21%)
Query: 13 KKHGFRSLKLVSFDLNEELGEQPFGVDYGRLDNGLFYYVRCNSKPRMRAALALAV----- 67
K GF +++L + + G QP G+DY + P +R +L +
Sbjct: 61 KSLGFNAIRLPFCTESVKPGTQPIGIDYSK-------------NPDLRGLDSLQIMEKII 107
Query: 68 -KAGS----VLEEEHERGVAHIVEHLAFSATEKYTNHDIIKFLESIGAEFGACQNAVTS 121
KAG VL + H G HI E L + TE ++ D I + FG N + +
Sbjct: 108 KKAGDLGIFVLLDYHRIGCTHI-EPLWY--TEDFSEEDFINTWIEVAKRFGKYWNVIGA 163
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 42/91 (46%), Gaps = 5/91 (5%)
Query: 779 PVELKNGTMVEEI--NYVG--FLSKLLETKMMQVLRFKHGQIYSASVSVFLGGNKHSRTG 834
P +L T + I NY+ + S +L +++L H +I +SVF N+
Sbjct: 16 PKDLSQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVF-KFNQELEYL 74
Query: 835 DVRGDISINFSCDPEISFKLVDLALDEISRL 865
D+ + + SC P ++ K +DL+ + L
Sbjct: 75 DLSHNKLVKISCHPTVNLKHLDLSFNAFDAL 105
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 32.3 bits (72), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 35/72 (48%), Gaps = 7/72 (9%)
Query: 794 VGFLSKLLETKMMQVLRFKHGQIYSASVSVFLGGNKHSRTGDVRGDISINFSCDPEISFK 853
+ FLS+L +VLR H +I S VFL N+ DV + N SC P S +
Sbjct: 72 ISFLSEL------RVLRLSHNRIRSLDFHVFL-FNQDLEYLDVSHNRLQNISCCPMASLR 124
Query: 854 LVDLALDEISRL 865
+DL+ ++ L
Sbjct: 125 HLDLSFNDFDVL 136
>pdb|2K4N|A Chain A, Nmr Structure Of Protein Pf0246 From Pyrococcus Furiosus:
Target Pfr75 From The Northeast Structural Genomics
Consortium
Length = 111
Score = 31.6 bits (70), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 98 NHDIIK-FLESIGAEFGACQNAVTSADETVYELFVPVDKPELLSRAIS 144
N ++IK FLE IG ++ +N + E YE++ V +PEL + I
Sbjct: 2 NSEVIKEFLEDIGEDYIELENEIHLKPEVFYEVWKYVGEPELKTYVIE 49
>pdb|3BCC|B Chain B, Stigmatellin And Antimycin Bound Cytochrome Bc1 Complex
From Chicken
pdb|2BCC|B Chain B, Stigmatellin-Bound Cytochrome Bc1 Complex From Chicken
Length = 422
Score = 30.8 bits (68), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 47/223 (21%), Positives = 90/223 (40%), Gaps = 18/223 (8%)
Query: 34 QPFGVDYGRLDNGLFYYVRCNSKPRMRAALALAVKAGSVLEEEHERGVAHIVEHLAFSAT 93
P ++ +L NGL N P + + + +KAGS E G +H++ + T
Sbjct: 3 HPQDLEITKLPNGLVIASLENYSPG--STIGVFIKAGSRYENSSNLGTSHLLRLASSLTT 60
Query: 94 EKYTNHDIIKFLESIGAEFGACQNAVTSADETVYELFVPVDKPELLSRAISVLAEFSTEV 153
+ ++ I + +E++G + S + T + V E L + +L EF V
Sbjct: 61 KGASSFKITRGIEAVGGKL--------SVESTRENMAYTV---ECLRDDVEILMEFLLNV 109
Query: 154 RVSKDDLEKERGAVLEEYRGNRNASGRMQDAHWVLMMEGSKYAECLPIGL---EKVIRTV 210
+ + E + + + ++ + + H + + + Y L L + I V
Sbjct: 110 TTAPEFRPWEVADLQPQLKIDKAVAFQNPQTHVIENLHAAAYRNALADSLYCPDYRIGKV 169
Query: 211 SSDTVKRFYQKWYRLQNMAVIAVG-DFPDTKGVVE-LINTHFG 251
+S + F Q + MA++ +G P K V E L+N G
Sbjct: 170 TSVELHDFVQNHFTSARMALVGLGVSHPVLKNVAEQLLNIRGG 212
>pdb|1BCC|B Chain B, Cytochrome Bc1 Complex From Chicken
Length = 422
Score = 30.8 bits (68), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 47/223 (21%), Positives = 90/223 (40%), Gaps = 18/223 (8%)
Query: 34 QPFGVDYGRLDNGLFYYVRCNSKPRMRAALALAVKAGSVLEEEHERGVAHIVEHLAFSAT 93
P ++ +L NGL N P + + + +KAGS E G +H++ + T
Sbjct: 3 HPQDLEITKLPNGLVIASLENYSPG--STIGVFIKAGSRYENSSNLGTSHLLRLASSLTT 60
Query: 94 EKYTNHDIIKFLESIGAEFGACQNAVTSADETVYELFVPVDKPELLSRAISVLAEFSTEV 153
+ ++ I + +E++G + S + T + V E L + +L EF V
Sbjct: 61 KGASSFKITRGIEAVGGKL--------SVESTRENMAYTV---ECLRDDVEILMEFLLNV 109
Query: 154 RVSKDDLEKERGAVLEEYRGNRNASGRMQDAHWVLMMEGSKYAECLPIGL---EKVIRTV 210
+ + E + + + ++ + + H + + + Y L L + I V
Sbjct: 110 TTAPEFRPWEVADLQPQLKIDKAVAFQNPQTHVIENLHAAAYRNALADSLYCPDYRIGKV 169
Query: 211 SSDTVKRFYQKWYRLQNMAVIAVG-DFPDTKGVVE-LINTHFG 251
+S + F Q + MA++ +G P K V E L+N G
Sbjct: 170 TSVELHDFVQNHFTSARMALVGLGVSHPVLKNVAEQLLNIRGG 212
>pdb|3S5H|A Chain A, Crystal Structures Of Falcilysin, A M16 Metalloprotease
From The Malaria Parasite Plasmodium Falciparum
pdb|3S5I|A Chain A, Crystal Structures Of Falcilysin, A M16 Metalloprotease
From The Malaria Parasite Plasmodium Falciparum
pdb|3S5K|A Chain A, Crystal Structures Of Falcilysin, A M16 Metalloprotease
From The Malaria Parasite Plasmodium Falciparum
pdb|3S5M|A Chain A, Crystal Structures Of Falcilysin, A M16 Metalloprotease
From The Malaria Parasite Plasmodium Falciparum
Length = 1193
Score = 30.8 bits (68), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
Query: 79 RGVAHIVEHLAFSATEKYTNHDIIKFLESIGAEFGACQNAVTSADETVY 127
+G+ HI+EH S ++ Y + I LE NA T D TVY
Sbjct: 125 KGIPHILEHSVLSGSKNYNYKNSIGLLEK--GTLHTHLNAYTFNDRTVY 171
>pdb|1C3C|A Chain A, T. Maritima Adenylosuccinate Lyase
pdb|1C3C|B Chain B, T. Maritima Adenylosuccinate Lyase
Length = 429
Score = 30.4 bits (67), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 16/24 (66%)
Query: 90 FSATEKYTNHDIIKFLESIGAEFG 113
F E+ TNHD++ F+E IG+ G
Sbjct: 58 FKKIEEKTNHDVVAFVEGIGSMIG 81
>pdb|1C3U|A Chain A, T. Maritima Adenylosuccinate Lyase
pdb|1C3U|B Chain B, T. Maritima Adenylosuccinate Lyase
Length = 431
Score = 30.4 bits (67), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 16/24 (66%)
Query: 90 FSATEKYTNHDIIKFLESIGAEFG 113
F E+ TNHD++ F+E IG+ G
Sbjct: 59 FKKIEEKTNHDVVAFVEGIGSMIG 82
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,709,821
Number of Sequences: 62578
Number of extensions: 1190056
Number of successful extensions: 2905
Number of sequences better than 100.0: 49
Number of HSP's better than 100.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 2860
Number of HSP's gapped (non-prelim): 56
length of query: 1008
length of database: 14,973,337
effective HSP length: 108
effective length of query: 900
effective length of database: 8,214,913
effective search space: 7393421700
effective search space used: 7393421700
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)