BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 001833
(1008 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1T1H|A Chain A, Nmr Solution Structure Of The U Box Domain From Atpub14,
An Armadillo Repeat Containing Protein From Arabidopsis
Thaliana
Length = 78
Score = 65.1 bits (157), Expect = 2e-10, Method: Composition-based stats.
Identities = 29/69 (42%), Positives = 42/69 (60%)
Query: 264 QSFYCPITRDVMVDPVETSSGQTFERSAIEKWFSDGNNLCPLTMTVLDTSILRPNKTLRQ 323
+ F CPI+ ++M DPV S+GQT+ERS+I+KW G+ CP + L + L PN L+
Sbjct: 7 EYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTPNYVLKS 66
Query: 324 SIEEWKDRN 332
I W + N
Sbjct: 67 LIALWCESN 75
>pdb|4DB6|A Chain A, Designed Armadillo Repeat Protein (Yiiim3aii)
Length = 210
Score = 53.5 bits (127), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 55/197 (27%), Positives = 92/197 (46%), Gaps = 12/197 (6%)
Query: 646 LTGPNVQQRILQTFNALCRSPSAGNIK-TTLTQCSAIPVLVQLCEHDNENVRANAVKLFC 704
L P+ QQ + L + S GN + + A+P LVQL NE + A+
Sbjct: 21 LNSPD-QQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALS 79
Query: 705 CLVDDGDEAIIREHVGQKCLETLVTIIQSSHNEEEIASAMGILSKLPEVP-QFTQWLLDA 763
+ G+E I+ + L LV ++ SS NE+ + A+ LS + + Q ++DA
Sbjct: 80 NIASGGNEQ-IQAVIDAGALPALVQLL-SSPNEQILQEALWALSNIASGGNEQIQAVIDA 137
Query: 764 GALPIVLNFLKNGRQNDPNRFQVVENAVGALRRFTAPTNLEWQKRAAEAGVIPKLVQLLE 823
GALP ++ L + PN Q+++ A+ AL + N E ++ EAG + KL QL
Sbjct: 138 GALPALVQLL-----SSPNE-QILQEALWALSNIASGGN-EQKQAVKEAGALEKLEQLQS 190
Query: 824 YGTTLTKEHAATSLARF 840
+ ++ A +L +
Sbjct: 191 HENEKIQKEAQEALEKL 207
>pdb|4DB8|A Chain A, Designed Armadillo-Repeat Protein
pdb|4DB8|B Chain B, Designed Armadillo-Repeat Protein
pdb|4DB8|C Chain C, Designed Armadillo-Repeat Protein
pdb|4DB8|D Chain D, Designed Armadillo-Repeat Protein
Length = 252
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/146 (31%), Positives = 73/146 (50%), Gaps = 10/146 (6%)
Query: 678 CSAIPVLVQLCEHDNENVRANAVKLFCCLVDDGDEAIIREHVGQKCLETLVTIIQSSHNE 737
A+P LVQL NE + A+ + G+E I+ + L LV ++ SS NE
Sbjct: 53 AGALPALVQLLSSPNEQILQEALWALSNIASGGNEQ-IQAVIDAGALPALVQLL-SSPNE 110
Query: 738 EEIASAMGILSKLPEVP-QFTQWLLDAGALPIVLNFLKNGRQNDPNRFQVVENAVGALRR 796
+ + A+ LS + + Q ++DAGALP ++ L + PN Q+++ A+ AL
Sbjct: 111 QILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSS-----PNE-QILQEALWALSN 164
Query: 797 FTAPTNLEWQKRAAEAGVIPKLVQLL 822
+ N + Q +AG +P LVQLL
Sbjct: 165 IASGGNEQIQA-VIDAGALPALVQLL 189
Score = 47.4 bits (111), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 54/205 (26%), Positives = 94/205 (45%), Gaps = 49/205 (23%)
Query: 758 QWLLDAGALPIVLNFLKNGRQNDPNRFQVVENAVGALRRFTAPTNLEWQKRAAEAGVIPK 817
Q ++DAGALP ++ L + PN Q+++ A+ AL + N + Q +AG +P
Sbjct: 48 QAVIDAGALPALVQLLSS-----PNE-QILQEALWALSNIASGGNEQIQA-VIDAGALPA 100
Query: 818 LVQLLEYGTTLTKEHAATSLARFSKNSLGLSRPIPK--RKGFWCFSPPPEIGCQVHGGLC 875
LVQL LS P + ++ W S + G
Sbjct: 101 LVQL-------------------------LSSPNEQILQEALWALS-------NIASG-- 126
Query: 876 GIESSFCLLEANAVRPLVRVLEDPDHGACEASLDALVTLIEG--ERLQNGSKVLEDANAI 933
G E +++A A+ LV++L P+ + +L AL + G E++Q + DA A+
Sbjct: 127 GNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQ----AVIDAGAL 182
Query: 934 DRMVRFLSSPSPKLQEKALDSVERI 958
+V+ LSSP+ ++ ++AL ++ I
Sbjct: 183 PALVQLLSSPNEQILQEALWALSNI 207
Score = 31.2 bits (69), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 44/99 (44%), Gaps = 11/99 (11%)
Query: 646 LTGPNVQQRILQ-TFNALCRSPSAGNIK-TTLTQCSAIPVLVQLCEHDNENVRANAVKLF 703
L+ PN ++ILQ AL S GN + + A+P LVQL NE + A+
Sbjct: 147 LSSPN--EQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWAL 204
Query: 704 CCLVDDGDE--AIIREHVGQKCLETLVTIIQSSHNEEEI 740
+ G+E ++E + LE L SH E+I
Sbjct: 205 SNIASGGNEQKQAVKEAGALEKLEQL-----QSHENEKI 238
>pdb|4DB9|A Chain A, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|B Chain B, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|C Chain C, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|D Chain D, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|E Chain E, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|F Chain F, Designed Armadillo Repeat Protein (Yiiim3aiii)
Length = 210
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 53/178 (29%), Positives = 84/178 (47%), Gaps = 12/178 (6%)
Query: 646 LTGPNVQQRILQTFNALCRSPSAGNIK-TTLTQCSAIPVLVQLCEHDNENVRANAVKLFC 704
L P+ QQ + L + S GN + + A+P LVQL NE + A+
Sbjct: 21 LNSPD-QQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALS 79
Query: 705 CLVDDGDEAIIREHVGQKCLETLVTIIQSSHNEEEIASAMGILSKLPEVP-QFTQWLLDA 763
+ G+E I+ + L LV ++ SS NE+ + A+ LS + + Q ++DA
Sbjct: 80 NIASGGNEQ-IQAVIDAGALPALVQLL-SSPNEQILQEALWALSNIASGGNEQIQAVIDA 137
Query: 764 GALPIVLNFLKNGRQNDPNRFQVVENAVGALRRFTAPTNLEWQKRAAEAGVIPKLVQL 821
GALP ++ L + PN Q+++ A+ AL + N E ++ EAG P L QL
Sbjct: 138 GALPALVQLL-----SSPNE-QILQEALWALSNIASGGN-EQKQAVKEAGAEPALEQL 188
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 59/227 (25%), Positives = 108/227 (47%), Gaps = 42/227 (18%)
Query: 733 SSHNEEEIASAMGILSKLPEVP-QFTQWLLDAGALPIVLNFLKNGRQNDPNRFQVVENAV 791
+S +++E+ SA+ LS++ + Q ++DAGALP ++ L + PN Q+++ A+
Sbjct: 22 NSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLL-----SSPNE-QILQEAL 75
Query: 792 GALRRFTAPTNLEWQKRAAEAGVIPKLVQLLEYGTTLTKEHAATSLARFSKNSLGLSRPI 851
AL + N + Q +AG +P LVQLL S N L
Sbjct: 76 WALSNIASGGNEQIQA-VIDAGALPALVQLLS-----------------SPNEQIL---- 113
Query: 852 PKRKGFWCFSPPPEIGCQVHGGLCGIESSFCLLEANAVRPLVRVLEDPDHGACEASLDAL 911
++ W S + G G E +++A A+ LV++L P+ + +L AL
Sbjct: 114 --QEALWALS-------NIASG--GNEQIQAVIDAGALPALVQLLSSPNEQILQEALWAL 162
Query: 912 VTLIEGERLQNGSKVLEDANAIDRMVRFLSSPSPKLQEKALDSVERI 958
+ G Q + +++A A + + SSP+ K+Q++A +++E+I
Sbjct: 163 SNIASGGNEQK--QAVKEAGAEPALEQLQSSPNEKIQKEAQEALEKI 207
>pdb|4DBA|A Chain A, Designed Armadillo Repeat Protein (Yiim3aii)
pdb|4DBA|B Chain B, Designed Armadillo Repeat Protein (Yiim3aii)
pdb|4DBA|C Chain C, Designed Armadillo Repeat Protein (Yiim3aii)
pdb|4DBA|D Chain D, Designed Armadillo Repeat Protein (Yiim3aii)
Length = 210
Score = 50.4 bits (119), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 79/164 (48%), Gaps = 10/164 (6%)
Query: 678 CSAIPVLVQLCEHDNENVRANAVKLFCCLVDDGDEAIIREHVGQKCLETLVTIIQSSHNE 737
A+P LVQL NE + A+ + G+E I+ + L LV ++ SS NE
Sbjct: 53 AGALPALVQLLSSPNEQILQEALWALSNIASGGNEQ-IQAVIDAGALPALVQLL-SSPNE 110
Query: 738 EEIASAMGILSKLPEVP-QFTQWLLDAGALPIVLNFLKNGRQNDPNRFQVVENAVGALRR 796
+ + A+ LS + + Q ++DAGALP ++ L + PN Q+++ A+ AL
Sbjct: 111 QILQEALWALSNIASGGNEQIQAVIDAGALPALVQLL-----SSPNE-QILQEALWALSN 164
Query: 797 FTAPTNLEWQKRAAEAGVIPKLVQLLEYGTTLTKEHAATSLARF 840
+ N E ++ EAG + KL QL + ++ A +L +
Sbjct: 165 IASGGN-EQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKL 207
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 49/203 (24%), Positives = 94/203 (46%), Gaps = 45/203 (22%)
Query: 758 QWLLDAGALPIVLNFLKNGRQNDPNRFQVVENAVGALRRFTAPTNLEWQKRAAEAGVIPK 817
Q ++DAGALP ++ L + PN Q+++ A+ AL + N + Q +AG +P
Sbjct: 48 QAVIDAGALPALVQLL-----SSPNE-QILQEALWALSNIASGGNEQIQA-VIDAGALPA 100
Query: 818 LVQLLEYGTTLTKEHAATSLARFSKNSLGLSRPIPK--RKGFWCFSPPPEIGCQVHGGLC 875
LVQL LS P + ++ W S + G
Sbjct: 101 LVQL-------------------------LSSPNEQILQEALWALS-------NIASG-- 126
Query: 876 GIESSFCLLEANAVRPLVRVLEDPDHGACEASLDALVTLIEGERLQNGSKVLEDANAIDR 935
G E +++A A+ LV++L P+ + +L AL + G Q + +++A A+++
Sbjct: 127 GNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQK--QAVKEAGALEK 184
Query: 936 MVRFLSSPSPKLQEKALDSVERI 958
+ + S + K+Q++A +++E++
Sbjct: 185 LEQLQSHENEKIQKEAQEALEKL 207
>pdb|1BK6|A Chain A, Karyopherin Alpha (Yeast) + Sv40 T Antigen Nls
pdb|1BK6|B Chain B, Karyopherin Alpha (Yeast) + Sv40 T Antigen Nls
Length = 422
Score = 49.7 bits (117), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 77/335 (22%), Positives = 137/335 (40%), Gaps = 60/335 (17%)
Query: 640 LFSLINLTGPNVQQRILQTFNALCRSPSAGNIKTTLTQCSAIPVLVQLCEHDNENVRANA 699
+ L N P++ + T + LCR + ++Q A+P L +L + +A
Sbjct: 132 ILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQ--ALPTLAKLIYSMDTETLVDA 189
Query: 700 VKLFCCLVDDGDEAI---IREHVGQKCLETLV---TIIQSSHNEEEIASAMGILSKLPEV 753
L D EAI I + ++ +E L T++Q+ A+G + ++
Sbjct: 190 CWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPA-----LRAVGNIVTGNDL 244
Query: 754 PQFTQWLLDAGALPIVLNFLKNGRQNDPNRFQVVENAVGALRRFTAPTNLEWQKRAAEAG 813
TQ +++AG LP + L + ++N + + A + TA N E + +A
Sbjct: 245 Q--TQVVINAGVLPALRLLLSSPKEN------IKKEACWTISNITA-GNTEQIQAVIDAN 295
Query: 814 VIPKLVQLLEYGTTLTKEHAATSLARFSKNSLGLSRPIPKRKGFWCFSPPPEIGCQVHGG 873
+IP LV+LLE TK+ A +++ S S GL RP R
Sbjct: 296 LIPPLVKLLEVAEYKTKKEACWAISNAS--SGGLQRPDIIRY------------------ 335
Query: 874 LCGIESSFCLLEANAVRPLVRVLEDPDHGACEASLDALVTLIE---------GERLQNGS 924
L+ ++PL +LE D+ E +LDAL +I+ G + +
Sbjct: 336 ---------LVSQGCIKPLCDLLEIADNRIIEVTLDALENIIKMGEADKEARGLNINENA 386
Query: 925 KVLEDANAIDRMVRFLSSPSPKLQEKALDSVERIF 959
+E A ++++ + + K+ EKA +E F
Sbjct: 387 DFIEKAGGMEKIFNCQQNENDKIYEKAYKIIETYF 421
>pdb|1BK5|A Chain A, Karyopherin Alpha From Saccharomyces Cerevisiae
pdb|1BK5|B Chain B, Karyopherin Alpha From Saccharomyces Cerevisiae
Length = 422
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 76/335 (22%), Positives = 137/335 (40%), Gaps = 60/335 (17%)
Query: 640 LFSLINLTGPNVQQRILQTFNALCRSPSAGNIKTTLTQCSAIPVLVQLCEHDNENVRANA 699
+ L N P++ + T + LCR + ++Q A+P L +L + +A
Sbjct: 132 ILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQ--ALPTLAKLIYSMDTETLVDA 189
Query: 700 VKLFCCLVDDGDEAI---IREHVGQKCLETLV---TIIQSSHNEEEIASAMGILSKLPEV 753
L D EAI I + ++ +E L T++Q+ A+G + ++
Sbjct: 190 CWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPA-----LRAVGNIVTGNDL 244
Query: 754 PQFTQWLLDAGALPIVLNFLKNGRQNDPNRFQVVENAVGALRRFTAPTNLEWQKRAAEAG 813
TQ +++AG LP + L + ++N + + A + TA N E + +A
Sbjct: 245 Q--TQVVINAGVLPALRLLLSSPKEN------IKKEACWTISNITA-GNTEQIQAVIDAN 295
Query: 814 VIPKLVQLLEYGTTLTKEHAATSLARFSKNSLGLSRPIPKRKGFWCFSPPPEIGCQVHGG 873
+IP LV+LLE TK+ A +++ S S GL RP R
Sbjct: 296 LIPPLVKLLEVAEYKTKKEACWAISNAS--SGGLQRPDIIRY------------------ 335
Query: 874 LCGIESSFCLLEANAVRPLVRVLEDPDHGACEASLDALVTLIE---------GERLQNGS 924
L+ ++PL +LE D+ E +LDAL +++ G + +
Sbjct: 336 ---------LVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLNINENA 386
Query: 925 KVLEDANAIDRMVRFLSSPSPKLQEKALDSVERIF 959
+E A ++++ + + K+ EKA +E F
Sbjct: 387 DFIEKAGGMEKIFNCQQNENDKIYEKAYKIIETYF 421
>pdb|1EE4|A Chain A, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In
A Complex With A C-Myc Nls Peptide
pdb|1EE4|B Chain B, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In
A Complex With A C-Myc Nls Peptide
Length = 423
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 76/335 (22%), Positives = 137/335 (40%), Gaps = 60/335 (17%)
Query: 640 LFSLINLTGPNVQQRILQTFNALCRSPSAGNIKTTLTQCSAIPVLVQLCEHDNENVRANA 699
+ L N P++ + T + LCR + ++Q A+P L +L + +A
Sbjct: 134 ILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQ--ALPTLAKLIYSMDTETLVDA 191
Query: 700 VKLFCCLVDDGDEAI---IREHVGQKCLETLV---TIIQSSHNEEEIASAMGILSKLPEV 753
L D EAI I + ++ +E L T++Q+ A+G + ++
Sbjct: 192 CWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPA-----LRAVGNIVTGNDL 246
Query: 754 PQFTQWLLDAGALPIVLNFLKNGRQNDPNRFQVVENAVGALRRFTAPTNLEWQKRAAEAG 813
TQ +++AG LP + L + ++N + + A + TA N E + +A
Sbjct: 247 Q--TQVVINAGVLPALRLLLSSPKEN------IKKEACWTISNITA-GNTEQIQAVIDAN 297
Query: 814 VIPKLVQLLEYGTTLTKEHAATSLARFSKNSLGLSRPIPKRKGFWCFSPPPEIGCQVHGG 873
+IP LV+LLE TK+ A +++ S S GL RP R
Sbjct: 298 LIPPLVKLLEVAEDKTKKEACWAISNAS--SGGLQRPDIIRY------------------ 337
Query: 874 LCGIESSFCLLEANAVRPLVRVLEDPDHGACEASLDALVTLIE---------GERLQNGS 924
L+ ++PL +LE D+ E +LDAL +++ G + +
Sbjct: 338 ---------LVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLNINENA 388
Query: 925 KVLEDANAIDRMVRFLSSPSPKLQEKALDSVERIF 959
+E A ++++ + + K+ EKA +E F
Sbjct: 389 DFIEKAGGMEKIFNCQQNENDKIYEKAYKIIETYF 423
Score = 30.8 bits (68), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 53/262 (20%), Positives = 97/262 (37%), Gaps = 61/262 (23%)
Query: 339 SMKPKLVSTEVEEVLHCLEQLQDLCQQRDQHREWVILENYIPKLIYLLGSKNRDVRNRAL 398
S KP L+ T L +LC+ + +W ++ +P L L+ S + + A
Sbjct: 140 SNKPSLIRTATW-------TLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDAC 192
Query: 399 IILHILVKDSNDTKERLANGDDAVESIVRSLGRRIEERKLAVALLLELSTCNTLRDQIGD 458
+ L D E+I + RI +R
Sbjct: 193 WAISYL-------------SDGPQEAIQAVIDVRIPKR---------------------- 217
Query: 459 VQGCILLLVTMASSDDNQASRDAQELLENLSFSDDNVVQMA-KANYFKHLLQRLSAGPES 517
LV + S + A + N+ +D Q+ A L LS+ E+
Sbjct: 218 -------LVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKEN 270
Query: 518 VKMRMATTLAEMELTDHHK-ASLLEGNVLGPLLHLVSRGDIQMKKVAVKALRNLSSVPQN 576
+K T++ + + + ++++ N++ PL+ L+ + + KK A A+ N SS
Sbjct: 271 IKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEDKTKKEACWAISNASS---G 327
Query: 577 GLQ-------MIKEGAVGPLVD 591
GLQ ++ +G + PL D
Sbjct: 328 GLQRPDIIRYLVSQGCIKPLCD 349
>pdb|2C1T|A Chain A, Structure Of The Kap60p:nup2 Complex
pdb|2C1T|B Chain B, Structure Of The Kap60p:nup2 Complex
Length = 454
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 76/335 (22%), Positives = 137/335 (40%), Gaps = 60/335 (17%)
Query: 640 LFSLINLTGPNVQQRILQTFNALCRSPSAGNIKTTLTQCSAIPVLVQLCEHDNENVRANA 699
+ L N P++ + T + LCR + ++Q A+P L +L + +A
Sbjct: 133 ILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQ--ALPTLAKLIYSMDTETLVDA 190
Query: 700 VKLFCCLVDDGDEAI---IREHVGQKCLETLV---TIIQSSHNEEEIASAMGILSKLPEV 753
L D EAI I + ++ +E L T++Q+ A+G + ++
Sbjct: 191 CWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPA-----LRAVGNIVTGNDL 245
Query: 754 PQFTQWLLDAGALPIVLNFLKNGRQNDPNRFQVVENAVGALRRFTAPTNLEWQKRAAEAG 813
TQ +++AG LP + L + ++N + + A + TA N E + +A
Sbjct: 246 Q--TQVVINAGVLPALRLLLSSPKEN------IKKEACWTISNITA-GNTEQIQAVIDAN 296
Query: 814 VIPKLVQLLEYGTTLTKEHAATSLARFSKNSLGLSRPIPKRKGFWCFSPPPEIGCQVHGG 873
+IP LV+LLE TK+ A +++ S S GL RP R
Sbjct: 297 LIPPLVKLLEVAEDKTKKEACWAISNAS--SGGLQRPDIIRY------------------ 336
Query: 874 LCGIESSFCLLEANAVRPLVRVLEDPDHGACEASLDALVTLIE---------GERLQNGS 924
L+ ++PL +LE D+ E +LDAL +++ G + +
Sbjct: 337 ---------LVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLNINENA 387
Query: 925 KVLEDANAIDRMVRFLSSPSPKLQEKALDSVERIF 959
+E A ++++ + + K+ EKA +E F
Sbjct: 388 DFIEKAGGMEKIFNCQQNENDKIYEKAYKIIETYF 422
Score = 30.8 bits (68), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 53/262 (20%), Positives = 97/262 (37%), Gaps = 61/262 (23%)
Query: 339 SMKPKLVSTEVEEVLHCLEQLQDLCQQRDQHREWVILENYIPKLIYLLGSKNRDVRNRAL 398
S KP L+ T L +LC+ + +W ++ +P L L+ S + + A
Sbjct: 139 SNKPSLIRTATW-------TLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDAC 191
Query: 399 IILHILVKDSNDTKERLANGDDAVESIVRSLGRRIEERKLAVALLLELSTCNTLRDQIGD 458
+ L D E+I + RI +R
Sbjct: 192 WAISYL-------------SDGPQEAIQAVIDVRIPKR---------------------- 216
Query: 459 VQGCILLLVTMASSDDNQASRDAQELLENLSFSDDNVVQMA-KANYFKHLLQRLSAGPES 517
LV + S + A + N+ +D Q+ A L LS+ E+
Sbjct: 217 -------LVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKEN 269
Query: 518 VKMRMATTLAEMELTDHHK-ASLLEGNVLGPLLHLVSRGDIQMKKVAVKALRNLSSVPQN 576
+K T++ + + + ++++ N++ PL+ L+ + + KK A A+ N SS
Sbjct: 270 IKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEDKTKKEACWAISNASS---G 326
Query: 577 GLQ-------MIKEGAVGPLVD 591
GLQ ++ +G + PL D
Sbjct: 327 GLQRPDIIRYLVSQGCIKPLCD 348
>pdb|1EE5|A Chain A, Yeast Karyopherin (Importin) Alpha In A Complex With A
Nucleoplasmin Nls Peptide
Length = 424
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 76/335 (22%), Positives = 137/335 (40%), Gaps = 60/335 (17%)
Query: 640 LFSLINLTGPNVQQRILQTFNALCRSPSAGNIKTTLTQCSAIPVLVQLCEHDNENVRANA 699
+ L N P++ + T + LCR + ++Q A+P L +L + +A
Sbjct: 134 ILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQ--ALPTLAKLIYSMDTETLVDA 191
Query: 700 VKLFCCLVDDGDEAI---IREHVGQKCLETLV---TIIQSSHNEEEIASAMGILSKLPEV 753
L D EAI I + ++ +E L T++Q+ A+G + ++
Sbjct: 192 CWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPA-----LRAVGNIVTGNDL 246
Query: 754 PQFTQWLLDAGALPIVLNFLKNGRQNDPNRFQVVENAVGALRRFTAPTNLEWQKRAAEAG 813
TQ +++AG LP + L + ++N + + A + TA N E + +A
Sbjct: 247 Q--TQVVINAGVLPALRLLLSSPKEN------IKKEACWTISNITA-GNTEQIQAVIDAN 297
Query: 814 VIPKLVQLLEYGTTLTKEHAATSLARFSKNSLGLSRPIPKRKGFWCFSPPPEIGCQVHGG 873
+IP LV+LLE TK+ A +++ S S GL RP R
Sbjct: 298 LIPPLVKLLEVAEDKTKKEACWAISNAS--SGGLQRPDIIRY------------------ 337
Query: 874 LCGIESSFCLLEANAVRPLVRVLEDPDHGACEASLDALVTLIE---------GERLQNGS 924
L+ ++PL +LE D+ E +LDAL +++ G + +
Sbjct: 338 ---------LVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLNINENA 388
Query: 925 KVLEDANAIDRMVRFLSSPSPKLQEKALDSVERIF 959
+E A ++++ + + K+ EKA +E F
Sbjct: 389 DFIEKAGGMEKIFNCQQNENDKIYEKAYKIIETYF 423
Score = 30.8 bits (68), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 53/262 (20%), Positives = 97/262 (37%), Gaps = 61/262 (23%)
Query: 339 SMKPKLVSTEVEEVLHCLEQLQDLCQQRDQHREWVILENYIPKLIYLLGSKNRDVRNRAL 398
S KP L+ T L +LC+ + +W ++ +P L L+ S + + A
Sbjct: 140 SNKPSLIRTATW-------TLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDAC 192
Query: 399 IILHILVKDSNDTKERLANGDDAVESIVRSLGRRIEERKLAVALLLELSTCNTLRDQIGD 458
+ L D E+I + RI +R
Sbjct: 193 WAISYL-------------SDGPQEAIQAVIDVRIPKR---------------------- 217
Query: 459 VQGCILLLVTMASSDDNQASRDAQELLENLSFSDDNVVQMA-KANYFKHLLQRLSAGPES 517
LV + S + A + N+ +D Q+ A L LS+ E+
Sbjct: 218 -------LVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKEN 270
Query: 518 VKMRMATTLAEMELTDHHK-ASLLEGNVLGPLLHLVSRGDIQMKKVAVKALRNLSSVPQN 576
+K T++ + + + ++++ N++ PL+ L+ + + KK A A+ N SS
Sbjct: 271 IKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEDKTKKEACWAISNASS---G 327
Query: 577 GLQ-------MIKEGAVGPLVD 591
GLQ ++ +G + PL D
Sbjct: 328 GLQRPDIIRYLVSQGCIKPLCD 349
>pdb|1WA5|B Chain B, Crystal Structure Of The Exportin Cse1p Complexed With Its
Cargo (Kap60p) And Rangtp
Length = 530
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 76/335 (22%), Positives = 137/335 (40%), Gaps = 60/335 (17%)
Query: 640 LFSLINLTGPNVQQRILQTFNALCRSPSAGNIKTTLTQCSAIPVLVQLCEHDNENVRANA 699
+ L N P++ + T + LCR + ++Q A+P L +L + +A
Sbjct: 220 ILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQ--ALPTLAKLIYSMDTETLVDA 277
Query: 700 VKLFCCLVDDGDEAI---IREHVGQKCLETLV---TIIQSSHNEEEIASAMGILSKLPEV 753
L D EAI I + ++ +E L T++Q+ A+G + ++
Sbjct: 278 CWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPA-----LRAVGNIVTGNDL 332
Query: 754 PQFTQWLLDAGALPIVLNFLKNGRQNDPNRFQVVENAVGALRRFTAPTNLEWQKRAAEAG 813
TQ +++AG LP + L + ++N + + A + TA N E + +A
Sbjct: 333 Q--TQVVINAGVLPALRLLLSSPKEN------IKKEACWTISNITA-GNTEQIQAVIDAN 383
Query: 814 VIPKLVQLLEYGTTLTKEHAATSLARFSKNSLGLSRPIPKRKGFWCFSPPPEIGCQVHGG 873
+IP LV+LLE TK+ A +++ S S GL RP R
Sbjct: 384 LIPPLVKLLEVAEYKTKKEACWAISNAS--SGGLQRPDIIR------------------- 422
Query: 874 LCGIESSFCLLEANAVRPLVRVLEDPDHGACEASLDALVTLIE---------GERLQNGS 924
L+ ++PL +LE D+ E +LDAL +++ G + +
Sbjct: 423 --------YLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLNINENA 474
Query: 925 KVLEDANAIDRMVRFLSSPSPKLQEKALDSVERIF 959
+E A ++++ + + K+ EKA +E F
Sbjct: 475 DFIEKAGGMEKIFNCQQNENDKIYEKAYKIIETYF 509
>pdb|1UN0|A Chain A, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In
Complex With A Nup2p N-Terminal Fragment
pdb|1UN0|B Chain B, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In
Complex With A Nup2p N-Terminal Fragment
Length = 443
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 76/335 (22%), Positives = 137/335 (40%), Gaps = 60/335 (17%)
Query: 640 LFSLINLTGPNVQQRILQTFNALCRSPSAGNIKTTLTQCSAIPVLVQLCEHDNENVRANA 699
+ L N P++ + T + LCR + ++Q A+P L +L + +A
Sbjct: 133 ILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQ--ALPTLAKLIYSMDTETLVDA 190
Query: 700 VKLFCCLVDDGDEAI---IREHVGQKCLETLV---TIIQSSHNEEEIASAMGILSKLPEV 753
L D EAI I + ++ +E L T++Q+ A+G + ++
Sbjct: 191 CWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPA-----LRAVGNIVTGNDL 245
Query: 754 PQFTQWLLDAGALPIVLNFLKNGRQNDPNRFQVVENAVGALRRFTAPTNLEWQKRAAEAG 813
TQ +++AG LP + L + ++N + + A + TA N E + +A
Sbjct: 246 Q--TQVVINAGVLPALRLLLSSPKEN------IKKEACWTISNITA-GNTEQIQAVIDAN 296
Query: 814 VIPKLVQLLEYGTTLTKEHAATSLARFSKNSLGLSRPIPKRKGFWCFSPPPEIGCQVHGG 873
+IP LV+LLE TK+ A +++ S S GL RP R
Sbjct: 297 LIPPLVKLLEVAEDKTKKEACWAISNAS--SGGLQRPDIIRY------------------ 336
Query: 874 LCGIESSFCLLEANAVRPLVRVLEDPDHGACEASLDALVTLIE---------GERLQNGS 924
L+ ++PL +LE D+ E +LDAL +++ G + +
Sbjct: 337 ---------LVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLNINENA 387
Query: 925 KVLEDANAIDRMVRFLSSPSPKLQEKALDSVERIF 959
+E A ++++ + + K+ EKA +E F
Sbjct: 388 DFIEKAGGMEKIFNCQQNENDKIYEKAYKIIETYF 422
Score = 30.8 bits (68), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 53/262 (20%), Positives = 97/262 (37%), Gaps = 61/262 (23%)
Query: 339 SMKPKLVSTEVEEVLHCLEQLQDLCQQRDQHREWVILENYIPKLIYLLGSKNRDVRNRAL 398
S KP L+ T L +LC+ + +W ++ +P L L+ S + + A
Sbjct: 139 SNKPSLIRTATW-------TLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDAC 191
Query: 399 IILHILVKDSNDTKERLANGDDAVESIVRSLGRRIEERKLAVALLLELSTCNTLRDQIGD 458
+ L D E+I + RI +R
Sbjct: 192 WAISYL-------------SDGPQEAIQAVIDVRIPKR---------------------- 216
Query: 459 VQGCILLLVTMASSDDNQASRDAQELLENLSFSDDNVVQMA-KANYFKHLLQRLSAGPES 517
LV + S + A + N+ +D Q+ A L LS+ E+
Sbjct: 217 -------LVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKEN 269
Query: 518 VKMRMATTLAEMELTDHHK-ASLLEGNVLGPLLHLVSRGDIQMKKVAVKALRNLSSVPQN 576
+K T++ + + + ++++ N++ PL+ L+ + + KK A A+ N SS
Sbjct: 270 IKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEDKTKKEACWAISNASS---G 326
Query: 577 GLQ-------MIKEGAVGPLVD 591
GLQ ++ +G + PL D
Sbjct: 327 GLQRPDIIRYLVSQGCIKPLCD 348
>pdb|3TPO|A Chain A, Crystal Structure Of D192aE396A MUTANT OF MOUSE IMPORTIN
ALPHA2
Length = 529
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 64/311 (20%), Positives = 128/311 (41%), Gaps = 47/311 (15%)
Query: 658 TFNALCRSPSAGNIKTTLTQCSAIPVLVQLCEHDNENVRANAVKLFCCLVDDGDEAIIRE 717
T + LCR+ + + Q +P LV+L H++ V A++ L D +E I E
Sbjct: 232 TLSNLCRNKNPAPPLDAVEQI--LPTLVRLLHHNDPEVLADSCWAISYLTDGPNERI--E 287
Query: 718 HVGQK-CLETLVTIIQSSHNEEEIASAMGILSKLPEVPQFTQWLLDAGALPIVLNFLKNG 776
V +K + LV ++ ++ + I + + + TQ ++DAGAL + + L N
Sbjct: 288 MVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNP 347
Query: 777 RQNDPNRFQVVENAVGALRRFTAPTNLEWQKRAAEAGVIPKLVQLLEYGTTLTKEHAATS 836
+ N + + A + TA + Q+ G++P LV +L T++ AA +
Sbjct: 348 KTN------IQKEATWTMSNITAGRQDQIQQ-VVNHGLVPFLVGVLSKADFKTQKAAAWA 400
Query: 837 LARFSKNSLGLSRPIPKRKGFWCFSPPPEIGCQVHGGLCGIESSFCLLEANAVRPLVRVL 896
+ ++ GG +E L+ + PL+ +L
Sbjct: 401 ITNYTS-----------------------------GGT--VEQIVYLVHCGIIEPLMNLL 429
Query: 897 EDPDHGACEASLDALVTLIE-GERLQNGSK---VLEDANAIDRMVRFLSSPSPKLQEKAL 952
D + LDA+ + + E+L K ++E+ +D++ + + + +L
Sbjct: 430 SAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASL 489
Query: 953 DSVERIFRLPE 963
+ +E+ F + E
Sbjct: 490 NLIEKYFSVEE 500
>pdb|3RZ9|A Chain A, Mouse Importin Alpha-Ku80 Nls Peptide Complex
pdb|3RZX|A Chain A, Mouse Importin Alpha-Ku70 Nls Peptide Complex
pdb|3OQS|A Chain A, Crystal Structure Of Importin-Alpha Bound To A Clic4 Nls
Peptide
pdb|3UVU|A Chain A, Structural Basis Of Nuclear Import Of Flap Endonuclease 1
(fen1)
Length = 510
Score = 40.0 bits (92), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 64/311 (20%), Positives = 128/311 (41%), Gaps = 47/311 (15%)
Query: 658 TFNALCRSPSAGNIKTTLTQCSAIPVLVQLCEHDNENVRANAVKLFCCLVDDGDEAIIRE 717
T + LCR+ + + Q +P LV+L H++ V A++ L D +E I E
Sbjct: 213 TLSNLCRNKNPAPPLDAVEQI--LPTLVRLLHHNDPEVLADSCWAISYLTDGPNERI--E 268
Query: 718 HVGQK-CLETLVTIIQSSHNEEEIASAMGILSKLPEVPQFTQWLLDAGALPIVLNFLKNG 776
V +K + LV ++ ++ + I + + + TQ ++DAGAL + + L N
Sbjct: 269 MVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNP 328
Query: 777 RQNDPNRFQVVENAVGALRRFTAPTNLEWQKRAAEAGVIPKLVQLLEYGTTLTKEHAATS 836
+ N + + A + TA + Q + G++P LV +L T++ AA +
Sbjct: 329 KTN------IQKEATWTMSNITAGRQDQIQ-QVVNHGLVPFLVGVLSKADFKTQKEAAWA 381
Query: 837 LARFSKNSLGLSRPIPKRKGFWCFSPPPEIGCQVHGGLCGIESSFCLLEANAVRPLVRVL 896
+ ++ GG +E L+ + PL+ +L
Sbjct: 382 ITNYTS-----------------------------GGT--VEQIVYLVHCGIIEPLMNLL 410
Query: 897 EDPDHGACEASLDALVTLIE-GERLQNGSK---VLEDANAIDRMVRFLSSPSPKLQEKAL 952
D + LDA+ + + E+L K ++E+ +D++ + + + +L
Sbjct: 411 SAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASL 470
Query: 953 DSVERIFRLPE 963
+ +E+ F + E
Sbjct: 471 NLIEKYFSVEE 481
>pdb|3UKW|B Chain B, Mouse Importin Alpha: Bimax1 Peptide Complex
pdb|3UKX|B Chain B, Mouse Importin Alpha: Bimax2 Peptide Complex
pdb|3UKY|B Chain B, Mouse Importin Alpha: Yeast Cbp80 Cnls Complex
pdb|3UKZ|B Chain B, Mouse Importin Alpha: Mouse Cbp80 Cnls Complex
pdb|3UL0|B Chain B, Mouse Importin Alpha: Mouse Cbp80y8d Cnls Complex
pdb|3UL1|B Chain B, Mouse Importin Alpha: Nucleoplasmin Cnls Peptide Complex
Length = 510
Score = 39.7 bits (91), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 62/310 (20%), Positives = 126/310 (40%), Gaps = 45/310 (14%)
Query: 658 TFNALCRSPSAGNIKTTLTQCSAIPVLVQLCEHDNENVRANAVKLFCCLVDDGDEAIIRE 717
T + LCR+ + + Q +P LV+L H++ V A++ L D +E I
Sbjct: 213 TLSNLCRNKNPAPPLDAVEQI--LPTLVRLLHHNDPEVLADSCWAISYLTDGPNERI-EM 269
Query: 718 HVGQKCLETLVTIIQSSHNEEEIASAMGILSKLPEVPQFTQWLLDAGALPIVLNFLKNGR 777
V + + LV ++ ++ + I + + + TQ ++DAGAL + + L N +
Sbjct: 270 VVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPK 329
Query: 778 QNDPNRFQVVENAVGALRRFTAPTNLEWQKRAAEAGVIPKLVQLLEYGTTLTKEHAATSL 837
N + + A + TA + Q + G++P LV +L T++ AA ++
Sbjct: 330 TN------IQKEATWTMSNITAGRQDQIQ-QVVNHGLVPFLVGVLSKADFKTQKEAAWAI 382
Query: 838 ARFSKNSLGLSRPIPKRKGFWCFSPPPEIGCQVHGGLCGIESSFCLLEANAVRPLVRVLE 897
++ GG +E L+ + PL+ +L
Sbjct: 383 TNYTS-----------------------------GGT--VEQIVYLVHCGIIEPLMNLLS 411
Query: 898 DPDHGACEASLDALVTLIE-GERLQNGSKV---LEDANAIDRMVRFLSSPSPKLQEKALD 953
D + LDA+ + + E+L K+ +E+ +D++ + + + +L+
Sbjct: 412 AKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLN 471
Query: 954 SVERIFRLPE 963
+E+ F + E
Sbjct: 472 LIEKYFSVEE 481
>pdb|4HTV|A Chain A, Mouse Importin Alpha: Bfdv Cap Nls Peptide Complex
Length = 509
Score = 39.7 bits (91), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 64/311 (20%), Positives = 128/311 (41%), Gaps = 47/311 (15%)
Query: 658 TFNALCRSPSAGNIKTTLTQCSAIPVLVQLCEHDNENVRANAVKLFCCLVDDGDEAIIRE 717
T + LCR+ + + Q +P LV+L H++ V A++ L D +E I E
Sbjct: 213 TLSNLCRNKNPAPPLDAVEQI--LPTLVRLLHHNDPEVLADSCWAISYLTDGPNERI--E 268
Query: 718 HVGQK-CLETLVTIIQSSHNEEEIASAMGILSKLPEVPQFTQWLLDAGALPIVLNFLKNG 776
V +K + LV ++ ++ + I + + + TQ ++DAGAL + + L N
Sbjct: 269 MVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNP 328
Query: 777 RQNDPNRFQVVENAVGALRRFTAPTNLEWQKRAAEAGVIPKLVQLLEYGTTLTKEHAATS 836
+ N + + A + TA + Q + G++P LV +L T++ AA +
Sbjct: 329 KTN------IQKEATWTMSNITAGRQDQIQ-QVVNHGLVPFLVGVLSKADFKTQKEAAWA 381
Query: 837 LARFSKNSLGLSRPIPKRKGFWCFSPPPEIGCQVHGGLCGIESSFCLLEANAVRPLVRVL 896
+ ++ GG +E L+ + PL+ +L
Sbjct: 382 ITNYTS-----------------------------GGT--VEQIVYLVHCGIIEPLMNLL 410
Query: 897 EDPDHGACEASLDALVTLIE-GERLQNGSKV---LEDANAIDRMVRFLSSPSPKLQEKAL 952
D + LDA+ + + E+L K+ +E+ +D++ + + + +L
Sbjct: 411 SAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASL 470
Query: 953 DSVERIFRLPE 963
+ +E+ F + E
Sbjct: 471 NLIEKYFSVEE 481
>pdb|1EJL|I Chain I, Mouse Importin Alpha-Sv40 Large T Antigen Nls Peptide
Complex
pdb|1EJY|I Chain I, Mouse Importin Alpha-Nucleoplasmin Nls Peptide Complex
pdb|1IQ1|C Chain C, Crystal Structure Of The Importin-Alpha(44-54)-Importin-
Alpha(70-529) Complex
pdb|1PJM|B Chain B, Mouse Importin Alpha-Bipartite Nls From Human
Retinoblastoma Protein Complex
pdb|1PJN|B Chain B, Mouse Importin Alpha-Bipartite Nls N1n2 From Xenopus
Laevis Phosphoprotein Complex
pdb|3KND|A Chain A, Tpx2:importin-Alpha Complex
pdb|3Q5U|A Chain A, A Minimal Nls From Human Scramblase 4 Complexed With
Importin Alpha
Length = 460
Score = 39.7 bits (91), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 64/311 (20%), Positives = 128/311 (41%), Gaps = 47/311 (15%)
Query: 658 TFNALCRSPSAGNIKTTLTQCSAIPVLVQLCEHDNENVRANAVKLFCCLVDDGDEAIIRE 717
T + LCR+ + + Q +P LV+L H++ V A++ L D +E I E
Sbjct: 163 TLSNLCRNKNPAPPLDAVEQI--LPTLVRLLHHNDPEVLADSCWAISYLTDGPNERI--E 218
Query: 718 HVGQK-CLETLVTIIQSSHNEEEIASAMGILSKLPEVPQFTQWLLDAGALPIVLNFLKNG 776
V +K + LV ++ ++ + I + + + TQ ++DAGAL + + L N
Sbjct: 219 MVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNP 278
Query: 777 RQNDPNRFQVVENAVGALRRFTAPTNLEWQKRAAEAGVIPKLVQLLEYGTTLTKEHAATS 836
+ N + + A + TA + Q + G++P LV +L T++ AA +
Sbjct: 279 KTN------IQKEATWTMSNITAGRQDQIQ-QVVNHGLVPFLVGVLSKADFKTQKEAAWA 331
Query: 837 LARFSKNSLGLSRPIPKRKGFWCFSPPPEIGCQVHGGLCGIESSFCLLEANAVRPLVRVL 896
+ ++ GG +E L+ + PL+ +L
Sbjct: 332 ITNYTS-----------------------------GGT--VEQIVYLVHCGIIEPLMNLL 360
Query: 897 EDPDHGACEASLDALVTLIE-GERLQNGSKV---LEDANAIDRMVRFLSSPSPKLQEKAL 952
D + LDA+ + + E+L K+ +E+ +D++ + + + +L
Sbjct: 361 SAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASL 420
Query: 953 DSVERIFRLPE 963
+ +E+ F + E
Sbjct: 421 NLIEKYFSVEE 431
>pdb|1Q1S|C Chain C, Mouse Importin Alpha- Phosphorylated Sv40 Cn Peptide
Complex
pdb|1Q1T|C Chain C, Mouse Importin Alpha: Non-Phosphorylated Sv40 Cn Peptide
Complex
Length = 466
Score = 39.7 bits (91), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 64/311 (20%), Positives = 128/311 (41%), Gaps = 47/311 (15%)
Query: 658 TFNALCRSPSAGNIKTTLTQCSAIPVLVQLCEHDNENVRANAVKLFCCLVDDGDEAIIRE 717
T + LCR+ + + Q +P LV+L H++ V A++ L D +E I E
Sbjct: 169 TLSNLCRNKNPAPPLDAVEQI--LPTLVRLLHHNDPEVLADSCWAISYLTDGPNERI--E 224
Query: 718 HVGQK-CLETLVTIIQSSHNEEEIASAMGILSKLPEVPQFTQWLLDAGALPIVLNFLKNG 776
V +K + LV ++ ++ + I + + + TQ ++DAGAL + + L N
Sbjct: 225 MVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNP 284
Query: 777 RQNDPNRFQVVENAVGALRRFTAPTNLEWQKRAAEAGVIPKLVQLLEYGTTLTKEHAATS 836
+ N + + A + TA + Q + G++P LV +L T++ AA +
Sbjct: 285 KTN------IQKEATWTMSNITAGRQDQIQ-QVVNHGLVPFLVGVLSKADFKTQKEAAWA 337
Query: 837 LARFSKNSLGLSRPIPKRKGFWCFSPPPEIGCQVHGGLCGIESSFCLLEANAVRPLVRVL 896
+ ++ GG +E L+ + PL+ +L
Sbjct: 338 ITNYTS-----------------------------GGT--VEQIVYLVHCGIIEPLMNLL 366
Query: 897 EDPDHGACEASLDALVTLIE-GERLQNGSKV---LEDANAIDRMVRFLSSPSPKLQEKAL 952
D + LDA+ + + E+L K+ +E+ +D++ + + + +L
Sbjct: 367 SAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASL 426
Query: 953 DSVERIFRLPE 963
+ +E+ F + E
Sbjct: 427 NLIEKYFSVEE 437
>pdb|4BA3|A Chain A, Mimp_alphadibb_a89nls
Length = 496
Score = 39.7 bits (91), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 64/311 (20%), Positives = 128/311 (41%), Gaps = 47/311 (15%)
Query: 658 TFNALCRSPSAGNIKTTLTQCSAIPVLVQLCEHDNENVRANAVKLFCCLVDDGDEAIIRE 717
T + LCR+ + + Q +P LV+L H++ V A++ L D +E I E
Sbjct: 199 TLSNLCRNKNPAPPLDAVEQI--LPTLVRLLHHNDPEVLADSCWAISYLTDGPNERI--E 254
Query: 718 HVGQK-CLETLVTIIQSSHNEEEIASAMGILSKLPEVPQFTQWLLDAGALPIVLNFLKNG 776
V +K + LV ++ ++ + I + + + TQ ++DAGAL + + L N
Sbjct: 255 MVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNP 314
Query: 777 RQNDPNRFQVVENAVGALRRFTAPTNLEWQKRAAEAGVIPKLVQLLEYGTTLTKEHAATS 836
+ N + + A + TA + Q + G++P LV +L T++ AA +
Sbjct: 315 KTN------IQKEATWTMSNITAGRQDQIQ-QVVNHGLVPFLVGVLSKADFKTQKEAAWA 367
Query: 837 LARFSKNSLGLSRPIPKRKGFWCFSPPPEIGCQVHGGLCGIESSFCLLEANAVRPLVRVL 896
+ ++ GG +E L+ + PL+ +L
Sbjct: 368 ITNYTS-----------------------------GGT--VEQIVYLVHCGIIEPLMNLL 396
Query: 897 EDPDHGACEASLDALVTLIE-GERLQNGSKV---LEDANAIDRMVRFLSSPSPKLQEKAL 952
D + LDA+ + + E+L K+ +E+ +D++ + + + +L
Sbjct: 397 SAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASL 456
Query: 953 DSVERIFRLPE 963
+ +E+ F + E
Sbjct: 457 NLIEKYFSVEE 467
>pdb|1IAL|A Chain A, Importin Alpha, Mouse
Length = 453
Score = 39.7 bits (91), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 63/307 (20%), Positives = 126/307 (41%), Gaps = 47/307 (15%)
Query: 658 TFNALCRSPSAGNIKTTLTQCSAIPVLVQLCEHDNENVRANAVKLFCCLVDDGDEAIIRE 717
T + LCR+ + + Q +P LV+L H++ V A++ L D +E I E
Sbjct: 189 TLSNLCRNKNPAPPLDAVEQI--LPTLVRLLHHNDPEVLADSCWAISYLTDGPNERI--E 244
Query: 718 HVGQK-CLETLVTIIQSSHNEEEIASAMGILSKLPEVPQFTQWLLDAGALPIVLNFLKNG 776
V +K + LV ++ ++ + I + + + TQ ++DAGAL + + L N
Sbjct: 245 MVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNP 304
Query: 777 RQNDPNRFQVVENAVGALRRFTAPTNLEWQKRAAEAGVIPKLVQLLEYGTTLTKEHAATS 836
+ N + + A + TA + Q + G++P LV +L T++ AA +
Sbjct: 305 KTN------IQKEATWTMSNITAGRQDQIQ-QVVNHGLVPFLVGVLSKADFKTQKEAAWA 357
Query: 837 LARFSKNSLGLSRPIPKRKGFWCFSPPPEIGCQVHGGLCGIESSFCLLEANAVRPLVRVL 896
+ ++ GG +E L+ + PL+ +L
Sbjct: 358 ITNYTS-----------------------------GGT--VEQIVYLVHCGIIEPLMNLL 386
Query: 897 EDPDHGACEASLDALVTLIE-GERLQNGSKV---LEDANAIDRMVRFLSSPSPKLQEKAL 952
D + LDA+ + + E+L K+ +E+ +D++ + + + +L
Sbjct: 387 SAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASL 446
Query: 953 DSVERIF 959
+ +E+ F
Sbjct: 447 NLIEKYF 453
>pdb|4HXT|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or329
Length = 252
Score = 39.7 bits (91), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 50/227 (22%), Positives = 96/227 (42%), Gaps = 14/227 (6%)
Query: 636 EIFMLFSLINLTGPNVQQRILQTFNALCRSPSAGNIKTTLTQCSAIPVLVQLCEHDNENV 695
++ L L+ T Q+ + + P A IK + + VLV+L + V
Sbjct: 3 DVEKLVKLLTSTDSETQKEAARDLAEIASGP-ASAIKA-IVDAGGVEVLVKLLTSTDSEV 60
Query: 696 RANAVKLFCCLVDDGDEAIIREHVGQKCLETLVTIIQSSHNE--EEIASAMGILSKLPEV 753
+ A + + DEA I+ V +E LV ++ S+ +E +E A A+ ++ P+
Sbjct: 61 QKEAARALANIASGPDEA-IKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPD- 118
Query: 754 PQFTQWLLDAGALPIVLNFLKNGRQNDPNRFQVVENAVGALRRFTAPTNLEWQKRAAEAG 813
+ + ++DAG + +++ L + +V + A AL + + E K +AG
Sbjct: 119 -EAIKAIVDAGGVEVLVKLLTS------TDSEVQKEAARALANIASGPD-EAIKAIVDAG 170
Query: 814 VIPKLVQLLEYGTTLTKEHAATSLARFSKNSLGLSRPIPKRKGFWCF 860
+ LV+LL + ++ AA +LA + + I G
Sbjct: 171 GVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVL 217
Score = 31.6 bits (70), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 29/125 (23%), Positives = 61/125 (48%), Gaps = 4/125 (3%)
Query: 458 DVQGCILLLVTMASSDDNQASRDAQELLENLSFSDDNVVQMAKANYFKHLLQRLSAGPES 517
DV+ + LL + S +A+RD E+ + + +V A + L++ L++
Sbjct: 3 DVEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVD---AGGVEVLVKLLTSTDSE 59
Query: 518 VKMRMATTLAEMELT-DHHKASLLEGNVLGPLLHLVSRGDIQMKKVAVKALRNLSSVPQN 576
V+ A LA + D ++++ + L+ L++ D +++K A +AL N++S P
Sbjct: 60 VQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDE 119
Query: 577 GLQMI 581
++ I
Sbjct: 120 AIKAI 124
>pdb|2YNR|A Chain A, Mimp_alphadibb_b54nls
Length = 461
Score = 38.9 bits (89), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 63/307 (20%), Positives = 126/307 (41%), Gaps = 47/307 (15%)
Query: 658 TFNALCRSPSAGNIKTTLTQCSAIPVLVQLCEHDNENVRANAVKLFCCLVDDGDEAIIRE 717
T + LCR+ + + Q +P LV+L H++ V A++ L D +E I E
Sbjct: 197 TLSNLCRNKNPAPPLDAVEQI--LPTLVRLLHHNDPEVLADSCWAISYLTDGPNERI--E 252
Query: 718 HVGQK-CLETLVTIIQSSHNEEEIASAMGILSKLPEVPQFTQWLLDAGALPIVLNFLKNG 776
V +K + LV ++ ++ + I + + + TQ ++DAGAL + + L N
Sbjct: 253 MVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNP 312
Query: 777 RQNDPNRFQVVENAVGALRRFTAPTNLEWQKRAAEAGVIPKLVQLLEYGTTLTKEHAATS 836
+ N + + A + TA + Q + G++P LV +L T++ AA +
Sbjct: 313 KTN------IQKEATWTMSNITAGRQDQIQ-QVVNHGLVPFLVGVLSKADFKTQKEAAWA 365
Query: 837 LARFSKNSLGLSRPIPKRKGFWCFSPPPEIGCQVHGGLCGIESSFCLLEANAVRPLVRVL 896
+ ++ GG +E L+ + PL+ +L
Sbjct: 366 ITNYTS-----------------------------GGT--VEQIVYLVHCGIIEPLMNLL 394
Query: 897 EDPDHGACEASLDALVTLIE-GERLQNGSKV---LEDANAIDRMVRFLSSPSPKLQEKAL 952
D + LDA+ + + E+L K+ +E+ +D++ + + + +L
Sbjct: 395 SAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASL 454
Query: 953 DSVERIF 959
+ +E+ F
Sbjct: 455 NLIEKYF 461
>pdb|3TPM|A Chain A, Crystal Structure Of Mal Rpel Domain In Complex With
Importin-Alpha
Length = 422
Score = 38.9 bits (89), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 63/307 (20%), Positives = 126/307 (41%), Gaps = 47/307 (15%)
Query: 658 TFNALCRSPSAGNIKTTLTQCSAIPVLVQLCEHDNENVRANAVKLFCCLVDDGDEAIIRE 717
T + LCR+ + + Q +P LV+L H++ V A++ L D +E I E
Sbjct: 158 TLSNLCRNKNPAPPLDAVEQI--LPTLVRLLHHNDPEVLADSCWAISYLTDGPNERI--E 213
Query: 718 HVGQK-CLETLVTIIQSSHNEEEIASAMGILSKLPEVPQFTQWLLDAGALPIVLNFLKNG 776
V +K + LV ++ ++ + I + + + TQ ++DAGAL + + L N
Sbjct: 214 MVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNP 273
Query: 777 RQNDPNRFQVVENAVGALRRFTAPTNLEWQKRAAEAGVIPKLVQLLEYGTTLTKEHAATS 836
+ N + + A + TA + Q + G++P LV +L T++ AA +
Sbjct: 274 KTN------IQKEATWTMSNITAGRQDQIQ-QVVNHGLVPFLVGVLSKADFKTQKEAAWA 326
Query: 837 LARFSKNSLGLSRPIPKRKGFWCFSPPPEIGCQVHGGLCGIESSFCLLEANAVRPLVRVL 896
+ ++ GG +E L+ + PL+ +L
Sbjct: 327 ITNYTS-----------------------------GGT--VEQIVYLVHCGIIEPLMNLL 355
Query: 897 EDPDHGACEASLDALVTLIE-GERLQNGSKV---LEDANAIDRMVRFLSSPSPKLQEKAL 952
D + LDA+ + + E+L K+ +E+ +D++ + + + +L
Sbjct: 356 SAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASL 415
Query: 953 DSVERIF 959
+ +E+ F
Sbjct: 416 NLIEKYF 422
>pdb|2C1M|A Chain A, Nup50:importin-Alpha Complex
Length = 424
Score = 38.9 bits (89), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 63/309 (20%), Positives = 127/309 (41%), Gaps = 47/309 (15%)
Query: 658 TFNALCRSPSAGNIKTTLTQCSAIPVLVQLCEHDNENVRANAVKLFCCLVDDGDEAIIRE 717
T + LCR+ + + Q +P LV+L H++ V A++ L D +E I E
Sbjct: 158 TLSNLCRNKNPAPPLDAVEQI--LPTLVRLLHHNDPEVLADSCWAISYLTDGPNERI--E 213
Query: 718 HVGQK-CLETLVTIIQSSHNEEEIASAMGILSKLPEVPQFTQWLLDAGALPIVLNFLKNG 776
V +K + LV ++ ++ + I + + + TQ ++DAGAL + + L N
Sbjct: 214 MVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNP 273
Query: 777 RQNDPNRFQVVENAVGALRRFTAPTNLEWQKRAAEAGVIPKLVQLLEYGTTLTKEHAATS 836
+ N + + A + TA + Q + G++P LV +L T++ AA +
Sbjct: 274 KTN------IQKEATWTMSNITAGRQDQIQ-QVVNHGLVPFLVGVLSKADFKTQKEAAWA 326
Query: 837 LARFSKNSLGLSRPIPKRKGFWCFSPPPEIGCQVHGGLCGIESSFCLLEANAVRPLVRVL 896
+ ++ GG +E L+ + PL+ +L
Sbjct: 327 ITNYTS-----------------------------GGT--VEQIVYLVHCGIIEPLMNLL 355
Query: 897 EDPDHGACEASLDALVTLIE-GERLQNGSKV---LEDANAIDRMVRFLSSPSPKLQEKAL 952
D + LDA+ + + E+L K+ +E+ +D++ + + + +L
Sbjct: 356 SAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASL 415
Query: 953 DSVERIFRL 961
+ +E+ F +
Sbjct: 416 NLIEKYFSV 424
>pdb|3VE6|A Chain A, Crystal Structure Analysis Of Venezuelan Equine
Encephalitis Virus Capsid Protein Nls And Importin Alpha
Length = 426
Score = 38.9 bits (89), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 63/307 (20%), Positives = 126/307 (41%), Gaps = 47/307 (15%)
Query: 658 TFNALCRSPSAGNIKTTLTQCSAIPVLVQLCEHDNENVRANAVKLFCCLVDDGDEAIIRE 717
T + LCR+ + + Q +P LV+L H++ V A++ L D +E I E
Sbjct: 162 TLSNLCRNKNPAPPLDAVEQI--LPTLVRLLHHNDPEVLADSCWAISYLTDGPNERI--E 217
Query: 718 HVGQK-CLETLVTIIQSSHNEEEIASAMGILSKLPEVPQFTQWLLDAGALPIVLNFLKNG 776
V +K + LV ++ ++ + I + + + TQ ++DAGAL + + L N
Sbjct: 218 MVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNP 277
Query: 777 RQNDPNRFQVVENAVGALRRFTAPTNLEWQKRAAEAGVIPKLVQLLEYGTTLTKEHAATS 836
+ N + + A + TA + Q + G++P LV +L T++ AA +
Sbjct: 278 KTN------IQKEATWTMSNITAGRQDQIQ-QVVNHGLVPFLVGVLSKADFKTQKEAAWA 330
Query: 837 LARFSKNSLGLSRPIPKRKGFWCFSPPPEIGCQVHGGLCGIESSFCLLEANAVRPLVRVL 896
+ ++ GG +E L+ + PL+ +L
Sbjct: 331 ITNYTS-----------------------------GGT--VEQIVYLVHCGIIEPLMNLL 359
Query: 897 EDPDHGACEASLDALVTLIE-GERLQNGSKV---LEDANAIDRMVRFLSSPSPKLQEKAL 952
D + LDA+ + + E+L K+ +E+ +D++ + + + +L
Sbjct: 360 SAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASL 419
Query: 953 DSVERIF 959
+ +E+ F
Sbjct: 420 NLIEKYF 426
>pdb|3L3Q|A Chain A, Mouse Importin Alpha-Peptm Nls Peptide Complex
Length = 427
Score = 38.9 bits (89), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 63/307 (20%), Positives = 126/307 (41%), Gaps = 47/307 (15%)
Query: 658 TFNALCRSPSAGNIKTTLTQCSAIPVLVQLCEHDNENVRANAVKLFCCLVDDGDEAIIRE 717
T + LCR+ + + Q +P LV+L H++ V A++ L D +E I E
Sbjct: 162 TLSNLCRNKNPAPPLDAVEQI--LPTLVRLLHHNDPEVLADSCWAISYLTDGPNERI--E 217
Query: 718 HVGQK-CLETLVTIIQSSHNEEEIASAMGILSKLPEVPQFTQWLLDAGALPIVLNFLKNG 776
V +K + LV ++ ++ + I + + + TQ ++DAGAL + + L N
Sbjct: 218 MVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNP 277
Query: 777 RQNDPNRFQVVENAVGALRRFTAPTNLEWQKRAAEAGVIPKLVQLLEYGTTLTKEHAATS 836
+ N + + A + TA + Q + G++P LV +L T++ AA +
Sbjct: 278 KTN------IQKEATWTMSNITAGRQDQIQ-QVVNHGLVPFLVGVLSKADFKTQKEAAWA 330
Query: 837 LARFSKNSLGLSRPIPKRKGFWCFSPPPEIGCQVHGGLCGIESSFCLLEANAVRPLVRVL 896
+ ++ GG +E L+ + PL+ +L
Sbjct: 331 ITNYTS-----------------------------GGT--VEQIVYLVHCGIIEPLMNLL 359
Query: 897 EDPDHGACEASLDALVTLIE-GERLQNGSKV---LEDANAIDRMVRFLSSPSPKLQEKAL 952
D + LDA+ + + E+L K+ +E+ +D++ + + + +L
Sbjct: 360 SAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASL 419
Query: 953 DSVERIF 959
+ +E+ F
Sbjct: 420 NLIEKYF 426
>pdb|3BTR|C Chain C, Ar-Nls:importin-Alpha Complex
Length = 427
Score = 38.9 bits (89), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 63/307 (20%), Positives = 126/307 (41%), Gaps = 47/307 (15%)
Query: 658 TFNALCRSPSAGNIKTTLTQCSAIPVLVQLCEHDNENVRANAVKLFCCLVDDGDEAIIRE 717
T + LCR+ + + Q +P LV+L H++ V A++ L D +E I E
Sbjct: 163 TLSNLCRNKNPAPPLDAVEQI--LPTLVRLLHHNDPEVLADSCWAISYLTDGPNERI--E 218
Query: 718 HVGQK-CLETLVTIIQSSHNEEEIASAMGILSKLPEVPQFTQWLLDAGALPIVLNFLKNG 776
V +K + LV ++ ++ + I + + + TQ ++DAGAL + + L N
Sbjct: 219 MVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNP 278
Query: 777 RQNDPNRFQVVENAVGALRRFTAPTNLEWQKRAAEAGVIPKLVQLLEYGTTLTKEHAATS 836
+ N + + A + TA + Q + G++P LV +L T++ AA +
Sbjct: 279 KTN------IQKEATWTMSNITAGRQDQIQ-QVVNHGLVPFLVGVLSKADFKTQKEAAWA 331
Query: 837 LARFSKNSLGLSRPIPKRKGFWCFSPPPEIGCQVHGGLCGIESSFCLLEANAVRPLVRVL 896
+ ++ GG +E L+ + PL+ +L
Sbjct: 332 ITNYTS-----------------------------GGT--VEQIVYLVHCGIIEPLMNLL 360
Query: 897 EDPDHGACEASLDALVTLIE-GERLQNGSKV---LEDANAIDRMVRFLSSPSPKLQEKAL 952
D + LDA+ + + E+L K+ +E+ +D++ + + + +L
Sbjct: 361 SAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASL 420
Query: 953 DSVERIF 959
+ +E+ F
Sbjct: 421 NLIEKYF 427
>pdb|1Y2A|C Chain C, Structure Of Mammalian Importin Bound To The Non-Classical
Plscr1-Nls
Length = 428
Score = 38.5 bits (88), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 63/307 (20%), Positives = 126/307 (41%), Gaps = 47/307 (15%)
Query: 658 TFNALCRSPSAGNIKTTLTQCSAIPVLVQLCEHDNENVRANAVKLFCCLVDDGDEAIIRE 717
T + LCR+ + + Q +P LV+L H++ V A++ L D +E I E
Sbjct: 163 TLSNLCRNKNPAPPLDAVEQI--LPTLVRLLHHNDPEVLADSCWAISYLTDGPNERI--E 218
Query: 718 HVGQK-CLETLVTIIQSSHNEEEIASAMGILSKLPEVPQFTQWLLDAGALPIVLNFLKNG 776
V +K + LV ++ ++ + I + + + TQ ++DAGAL + + L N
Sbjct: 219 MVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNP 278
Query: 777 RQNDPNRFQVVENAVGALRRFTAPTNLEWQKRAAEAGVIPKLVQLLEYGTTLTKEHAATS 836
+ N + + A + TA + Q + G++P LV +L T++ AA +
Sbjct: 279 KTN------IQKEATWTMSNITAGRQDQIQ-QVVNHGLVPFLVGVLSKADFKTQKEAAWA 331
Query: 837 LARFSKNSLGLSRPIPKRKGFWCFSPPPEIGCQVHGGLCGIESSFCLLEANAVRPLVRVL 896
+ ++ GG +E L+ + PL+ +L
Sbjct: 332 ITNYTS-----------------------------GGT--VEQIVYLVHCGIIEPLMNLL 360
Query: 897 EDPDHGACEASLDALVTLIE-GERLQNGSKV---LEDANAIDRMVRFLSSPSPKLQEKAL 952
D + LDA+ + + E+L K+ +E+ +D++ + + + +L
Sbjct: 361 SAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASL 420
Query: 953 DSVERIF 959
+ +E+ F
Sbjct: 421 NLIEKYF 427
>pdb|3FEX|C Chain C, Crystal Structure Of The Cbc-Importin Alpha Complex.
pdb|3FEY|C Chain C, Crystal Structure Of The Cbc-Importin Alpha Complex
Length = 467
Score = 37.4 bits (85), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 63/310 (20%), Positives = 122/310 (39%), Gaps = 45/310 (14%)
Query: 658 TFNALCRSPSAGNIKTTLTQCSAIPVLVQLCEHDNENVRANAVKLFCCLVDDGDEAIIRE 717
T + LCR+ + + Q +P LV+L HD+ V A+ L D +E I
Sbjct: 164 TLSNLCRNKNPAPPIDAVEQI--LPTLVRLLHHDDPEVLADTCWAISYLTDGPNER-IGM 220
Query: 718 HVGQKCLETLVTIIQSSHNEEEIASAMGILSKLPEVPQFTQWLLDAGALPIVLNFLKNGR 777
V + LV ++ +S + I + + + TQ ++DAGAL + + L N +
Sbjct: 221 VVKTGVVPQLVKLLGASELPIVTPALRAIGNIVTGTDEQTQVVIDAGALAVFPSLLTNPK 280
Query: 778 QNDPNRFQVVENAVGALRRFTAPTNLEWQKRAAEAGVIPKLVQLLEYGTTLTKEHAATSL 837
N + + A + TA + Q + G++P LV +L T++ A ++
Sbjct: 281 TN------IQKEATWTMSNITAGRQDQIQ-QVVNHGLVPFLVSVLSKADFKTQKEAVWAV 333
Query: 838 ARFSKNSLGLSRPIPKRKGFWCFSPPPEIGCQVHGGLCGIESSFCLLEANAVRPLVRVLE 897
++ GG +E L+ + PL+ +L
Sbjct: 334 TNYTS-----------------------------GGT--VEQIVYLVHCGIIEPLMNLLT 362
Query: 898 DPDHGACEASLDALVTLIE-GERLQNGSKV---LEDANAIDRMVRFLSSPSPKLQEKALD 953
D LDA+ + + E+L K+ +E+ +D++ + + + + +L
Sbjct: 363 AKDTKIILVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQNHENESVYKASLS 422
Query: 954 SVERIFRLPE 963
+E+ F + E
Sbjct: 423 LIEKYFSVEE 432
>pdb|2YNS|A Chain A, Rimp_alpha_b54nls
pdb|2YNS|B Chain B, Rimp_alpha_b54nls
pdb|4B8O|A Chain A, Rimp_alpha_sv40tagnls
pdb|4B8P|A Chain A, Rimp_alpha_a89nls
pdb|4B8P|B Chain B, Rimp_alpha_a89nls
Length = 490
Score = 37.4 bits (85), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 56/242 (23%), Positives = 110/242 (45%), Gaps = 14/242 (5%)
Query: 359 LQDLCQQRDQHREWVILENYIPKLIYLLGSKNRDVRNRALIILHILVKDSNDTKER-LAN 417
L ++ ++ + VI +P + LLGS + DVR +A+ L + DS ++ LAN
Sbjct: 104 LTNIASGTSENTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLAN 163
Query: 418 GDDAVESIVRSLGRRIEERKLAVALLLELSTCNTLRDQ----IGDVQGCILLLVTMASSD 473
G +++ L + E KL++ + N R + + + L + S+
Sbjct: 164 G-----ALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQTRPALPALARLIHSN 218
Query: 474 DNQASRDAQELLENLS-FSDDNVVQMAKANYFKHLLQRLSAGPESVKMRMATTLAEMELT 532
D + DA L LS ++D + + +A L++ L SV + T+ +
Sbjct: 219 DEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTG 278
Query: 533 DHHKAS-LLEGNVLGPLLHLVSRG-DIQMKKVAVKALRNLSSVPQNGLQ-MIKEGAVGPL 589
D + +++ L LL L+++ +KK A + N+++ ++ +Q +I G +GPL
Sbjct: 279 DDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPL 338
Query: 590 VD 591
V+
Sbjct: 339 VN 340
>pdb|4B8J|A Chain A, Rimp_alpha1a
Length = 528
Score = 37.0 bits (84), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 55/228 (24%), Positives = 104/228 (45%), Gaps = 14/228 (6%)
Query: 373 VILENYIPKLIYLLGSKNRDVRNRALIILHILVKDSNDTKER-LANGDDAVESIVRSLGR 431
VI +P + LLGS + DVR +A+ L + DS ++ LANG +++ L +
Sbjct: 156 VIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANG-----ALLPLLAQ 210
Query: 432 RIEERKLAVALLLELSTCNTLRDQ----IGDVQGCILLLVTMASSDDNQASRDAQELLEN 487
E KL++ + N R + + + L + S+D + DA L
Sbjct: 211 LNEHTKLSMLRNATWTLSNFCRGKPQPSFEQTRPALPALARLIHSNDEEVLTDACWALSY 270
Query: 488 LS-FSDDNVVQMAKANYFKHLLQRLSAGPESVKMRMATTLAEMELTDHHKAS-LLEGNVL 545
LS ++D + + +A L++ L SV + T+ + D + +++ L
Sbjct: 271 LSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQAL 330
Query: 546 GPLLHLVSRG-DIQMKKVAVKALRNLSSVPQNGLQ-MIKEGAVGPLVD 591
LL L+++ +KK A + N+++ ++ +Q +I G +GPLV+
Sbjct: 331 PCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVN 378
>pdb|2GL7|A Chain A, Crystal Structure Of A Beta-CateninBCL9TCF4 COMPLEX
pdb|2GL7|D Chain D, Crystal Structure Of A Beta-CateninBCL9TCF4 COMPLEX
Length = 550
Score = 35.0 bits (79), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 83/365 (22%), Positives = 152/365 (41%), Gaps = 35/365 (9%)
Query: 468 TMASSDDNQASRDAQELLENLSFSDDNVVQMAKANYFKHLLQRLSAGPESVKMRMATTLA 527
TM +++D + +R L NLS + ++ + K+ L++ L + +SV TTL
Sbjct: 65 TMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLH 124
Query: 528 EMELTDHHKASLLEGNVLGPL---LHLVSRGDIQMKKVAVKALRNLSSVPQNGLQMIKEG 584
+ L H + + + + G L + L+++ +++ + L+ L+ Q ++I
Sbjct: 125 NLLL--HQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQES-KLIILA 181
Query: 585 AVGPLVDXXXXXXXXXXXXREETATAIMHLAVSTMYQESSQTPVTLLESDKEIFMLFSLI 644
+ GP T+ + L+V SS P + + L
Sbjct: 182 SGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC-----SSNKPAIVEAGGMQALGL---- 232
Query: 645 NLTGPNVQQRILQTFNALCRSPSAGNIKTTLTQCSAIPVLVQLCEHDNENVRANAVKLFC 704
+LT P+ QR++Q R+ S K + + LVQL D+ NV A +
Sbjct: 233 HLTDPS--QRLVQNCLWTLRNLSDAATKQEGME-GLLGTLVQLLGSDDINVVTCAAGILS 289
Query: 705 CLV-DDGDEAIIREHVGQKCLETLV-TIIQSSHNEEEIASAMGILSKLPEVPQFTQWLLD 762
L ++ ++ VG +E LV T++++ E+ A+ L L Q + +
Sbjct: 290 NLTCNNYKNKMMVCQVGG--IEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQN 347
Query: 763 A----GALPIVLNFLKNGRQNDPNRFQVVENAVGALRRFT-APTNLEWQKRAAEAGVIPK 817
A LP+V+ L + P+ + +++ VG +R P N E G IP+
Sbjct: 348 AVRLHYGLPVVVKLL-----HPPSHWPLIKATVGLIRNLALCPAN---HAPLREQGAIPR 399
Query: 818 LVQLL 822
LVQLL
Sbjct: 400 LVQLL 404
>pdb|1I7X|A Chain A, Beta-CateninE-Cadherin Complex
pdb|1I7X|C Chain C, Beta-CateninE-Cadherin Complex
pdb|1I7W|A Chain A, Beta-CateninPHOSPHORYLATED E-Cadherin Complex
pdb|1I7W|C Chain C, Beta-CateninPHOSPHORYLATED E-Cadherin Complex
pdb|1JPP|A Chain A, The Structure Of A Beta-Catenin Binding Repeat From
Adenomatous Polyposis Coli (Apc) In Complex With
Beta-Catenin
pdb|1JPP|B Chain B, The Structure Of A Beta-Catenin Binding Repeat From
Adenomatous Polyposis Coli (Apc) In Complex With
Beta-Catenin
pdb|1M1E|A Chain A, Beta-Catenin Armadillo Repeat Domain Bound To Icat
pdb|1V18|A Chain A, The Crystal Structure Of Beta-Catenin Armadillo Repeat
Complexed With A Phosphorylated Apc 20mer Repeat
Length = 538
Score = 35.0 bits (79), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 83/365 (22%), Positives = 152/365 (41%), Gaps = 35/365 (9%)
Query: 468 TMASSDDNQASRDAQELLENLSFSDDNVVQMAKANYFKHLLQRLSAGPESVKMRMATTLA 527
TM +++D + +R L NLS + ++ + K+ L++ L + +SV TTL
Sbjct: 68 TMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLH 127
Query: 528 EMELTDHHKASLLEGNVLGPL---LHLVSRGDIQMKKVAVKALRNLSSVPQNGLQMIKEG 584
+ L H + + + + G L + L+++ +++ + L+ L+ Q ++I
Sbjct: 128 NLLL--HQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQES-KLIILA 184
Query: 585 AVGPLVDXXXXXXXXXXXXREETATAIMHLAVSTMYQESSQTPVTLLESDKEIFMLFSLI 644
+ GP T+ + L+V SS P + + L
Sbjct: 185 SGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC-----SSNKPAIVEAGGMQALGL---- 235
Query: 645 NLTGPNVQQRILQTFNALCRSPSAGNIKTTLTQCSAIPVLVQLCEHDNENVRANAVKLFC 704
+LT P+ QR++Q R+ S K + + LVQL D+ NV A +
Sbjct: 236 HLTDPS--QRLVQNCLWTLRNLSDAATKQEGME-GLLGTLVQLLGSDDINVVTCAAGILS 292
Query: 705 CLV-DDGDEAIIREHVGQKCLETLV-TIIQSSHNEEEIASAMGILSKLPEVPQFTQWLLD 762
L ++ ++ VG +E LV T++++ E+ A+ L L Q + +
Sbjct: 293 NLTCNNYKNKMMVCQVGG--IEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQN 350
Query: 763 A----GALPIVLNFLKNGRQNDPNRFQVVENAVGALRRFT-APTNLEWQKRAAEAGVIPK 817
A LP+V+ L + P+ + +++ VG +R P N E G IP+
Sbjct: 351 AVRLHYGLPVVVKLL-----HPPSHWPLIKATVGLIRNLALCPAN---HAPLREQGAIPR 402
Query: 818 LVQLL 822
LVQLL
Sbjct: 403 LVQLL 407
>pdb|3OUW|A Chain A, Structure Of Beta-Catenin With Lef-1
pdb|3OUX|A Chain A, Structure Of Beta-Catenin With Phosphorylated Lef-1
Length = 540
Score = 34.7 bits (78), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 83/365 (22%), Positives = 152/365 (41%), Gaps = 35/365 (9%)
Query: 468 TMASSDDNQASRDAQELLENLSFSDDNVVQMAKANYFKHLLQRLSAGPESVKMRMATTLA 527
TM +++D + +R L NLS + ++ + K+ L++ L + +SV TTL
Sbjct: 70 TMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLH 129
Query: 528 EMELTDHHKASLLEGNVLGPL---LHLVSRGDIQMKKVAVKALRNLSSVPQNGLQMIKEG 584
+ L H + + + + G L + L+++ +++ + L+ L+ Q ++I
Sbjct: 130 NLLL--HQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQES-KLIILA 186
Query: 585 AVGPLVDXXXXXXXXXXXXREETATAIMHLAVSTMYQESSQTPVTLLESDKEIFMLFSLI 644
+ GP T+ + L+V SS P + + L
Sbjct: 187 SGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC-----SSNKPAIVEAGGMQALGL---- 237
Query: 645 NLTGPNVQQRILQTFNALCRSPSAGNIKTTLTQCSAIPVLVQLCEHDNENVRANAVKLFC 704
+LT P+ QR++Q R+ S K + + LVQL D+ NV A +
Sbjct: 238 HLTDPS--QRLVQNCLWTLRNLSDAATKQEGME-GLLGTLVQLLGSDDINVVTCAAGILS 294
Query: 705 CLV-DDGDEAIIREHVGQKCLETLV-TIIQSSHNEEEIASAMGILSKLPEVPQFTQWLLD 762
L ++ ++ VG +E LV T++++ E+ A+ L L Q + +
Sbjct: 295 NLTCNNYKNKMMVCQVGG--IEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQN 352
Query: 763 A----GALPIVLNFLKNGRQNDPNRFQVVENAVGALRRFT-APTNLEWQKRAAEAGVIPK 817
A LP+V+ L + P+ + +++ VG +R P N E G IP+
Sbjct: 353 AVRLHYGLPVVVKLL-----HPPSHWPLIKATVGLIRNLALCPAN---HAPLREQGAIPR 404
Query: 818 LVQLL 822
LVQLL
Sbjct: 405 LVQLL 409
>pdb|2BCT|A Chain A, The Armadillo Repeat Region From Murine Beta-Catenin
Length = 516
Score = 34.7 bits (78), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 83/365 (22%), Positives = 152/365 (41%), Gaps = 35/365 (9%)
Query: 468 TMASSDDNQASRDAQELLENLSFSDDNVVQMAKANYFKHLLQRLSAGPESVKMRMATTLA 527
TM +++D + +R L NLS + ++ + K+ L++ L + +SV TTL
Sbjct: 52 TMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLH 111
Query: 528 EMELTDHHKASLLEGNVLGPL---LHLVSRGDIQMKKVAVKALRNLSSVPQNGLQMIKEG 584
+ L H + + + + G L + L+++ +++ + L+ L+ Q ++I
Sbjct: 112 NLLL--HQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQES-KLIILA 168
Query: 585 AVGPLVDXXXXXXXXXXXXREETATAIMHLAVSTMYQESSQTPVTLLESDKEIFMLFSLI 644
+ GP T+ + L+V SS P + + L
Sbjct: 169 SGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC-----SSNKPAIVEAGGMQALGL---- 219
Query: 645 NLTGPNVQQRILQTFNALCRSPSAGNIKTTLTQCSAIPVLVQLCEHDNENVRANAVKLFC 704
+LT P+ QR++Q R+ S K + + LVQL D+ NV A +
Sbjct: 220 HLTDPS--QRLVQNCLWTLRNLSDAATKQEGME-GLLGTLVQLLGSDDINVVTCAAGILS 276
Query: 705 CLV-DDGDEAIIREHVGQKCLETLV-TIIQSSHNEEEIASAMGILSKLPEVPQFTQWLLD 762
L ++ ++ VG +E LV T++++ E+ A+ L L Q + +
Sbjct: 277 NLTCNNYKNKMMVCQVGG--IEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQN 334
Query: 763 A----GALPIVLNFLKNGRQNDPNRFQVVENAVGALRRFT-APTNLEWQKRAAEAGVIPK 817
A LP+V+ L + P+ + +++ VG +R P N E G IP+
Sbjct: 335 AVRLHYGLPVVVKLL-----HPPSHWPLIKATVGLIRNLALCPAN---HAPLREQGAIPR 386
Query: 818 LVQLL 822
LVQLL
Sbjct: 387 LVQLL 391
>pdb|3TX7|A Chain A, Crystal Structure Of Lrh-1BETA-Catenin Complex
Length = 527
Score = 34.7 bits (78), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 83/365 (22%), Positives = 152/365 (41%), Gaps = 35/365 (9%)
Query: 468 TMASSDDNQASRDAQELLENLSFSDDNVVQMAKANYFKHLLQRLSAGPESVKMRMATTLA 527
TM +++D + +R L NLS + ++ + K+ L++ L + +SV TTL
Sbjct: 65 TMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLH 124
Query: 528 EMELTDHHKASLLEGNVLGPL---LHLVSRGDIQMKKVAVKALRNLSSVPQNGLQMIKEG 584
+ L H + + + + G L + L+++ +++ + L+ L+ Q ++I
Sbjct: 125 NLLL--HQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQES-KLIILA 181
Query: 585 AVGPLVDXXXXXXXXXXXXREETATAIMHLAVSTMYQESSQTPVTLLESDKEIFMLFSLI 644
+ GP T+ + L+V SS P + + L
Sbjct: 182 SGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC-----SSNKPAIVEAGGMQALGL---- 232
Query: 645 NLTGPNVQQRILQTFNALCRSPSAGNIKTTLTQCSAIPVLVQLCEHDNENVRANAVKLFC 704
+LT P+ QR++Q R+ S K + + LVQL D+ NV A +
Sbjct: 233 HLTDPS--QRLVQNCLWTLRNLSDAATKQEGME-GLLGTLVQLLGSDDINVVTCAAGILS 289
Query: 705 CLV-DDGDEAIIREHVGQKCLETLV-TIIQSSHNEEEIASAMGILSKLPEVPQFTQWLLD 762
L ++ ++ VG +E LV T++++ E+ A+ L L Q + +
Sbjct: 290 NLTCNNYKNKMMVCQVGG--IEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQN 347
Query: 763 A----GALPIVLNFLKNGRQNDPNRFQVVENAVGALRRFT-APTNLEWQKRAAEAGVIPK 817
A LP+V+ L + P+ + +++ VG +R P N E G IP+
Sbjct: 348 AVRLHYGLPVVVKLL-----HPPSHWPLIKATVGLIRNLALCPAN---HAPLREQGAIPR 399
Query: 818 LVQLL 822
LVQLL
Sbjct: 400 LVQLL 404
>pdb|2Z6H|A Chain A, Crystal Structure Of Beta-Catenin Armadillo Repeat Region
And Its C-Terminal Domain
Length = 644
Score = 34.7 bits (78), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 83/365 (22%), Positives = 152/365 (41%), Gaps = 35/365 (9%)
Query: 468 TMASSDDNQASRDAQELLENLSFSDDNVVQMAKANYFKHLLQRLSAGPESVKMRMATTLA 527
TM +++D + +R L NLS + ++ + K+ L++ L + +SV TTL
Sbjct: 64 TMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLH 123
Query: 528 EMELTDHHKASLLEGNVLGPL---LHLVSRGDIQMKKVAVKALRNLSSVPQNGLQMIKEG 584
+ L H + + + + G L + L+++ +++ + L+ L+ Q ++I
Sbjct: 124 NLLL--HQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQES-KLIILA 180
Query: 585 AVGPLVDXXXXXXXXXXXXREETATAIMHLAVSTMYQESSQTPVTLLESDKEIFMLFSLI 644
+ GP T+ + L+V SS P + + L
Sbjct: 181 SGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC-----SSNKPAIVEAGGMQALGL---- 231
Query: 645 NLTGPNVQQRILQTFNALCRSPSAGNIKTTLTQCSAIPVLVQLCEHDNENVRANAVKLFC 704
+LT P+ QR++Q R+ S K + + LVQL D+ NV A +
Sbjct: 232 HLTDPS--QRLVQNCLWTLRNLSDAATKQEGME-GLLGTLVQLLGSDDINVVTCAAGILS 288
Query: 705 CLV-DDGDEAIIREHVGQKCLETLV-TIIQSSHNEEEIASAMGILSKLPEVPQFTQWLLD 762
L ++ ++ VG +E LV T++++ E+ A+ L L Q + +
Sbjct: 289 NLTCNNYKNKMMVCQVGG--IEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQN 346
Query: 763 A----GALPIVLNFLKNGRQNDPNRFQVVENAVGALRRFT-APTNLEWQKRAAEAGVIPK 817
A LP+V+ L + P+ + +++ VG +R P N E G IP+
Sbjct: 347 AVRLHYGLPVVVKLL-----HPPSHWPLIKATVGLIRNLALCPAN---HAPLREQGAIPR 398
Query: 818 LVQLL 822
LVQLL
Sbjct: 399 LVQLL 403
>pdb|1JDH|A Chain A, Crystal Structure Of Beta-Catenin And Htcf-4
Length = 529
Score = 34.7 bits (78), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 83/365 (22%), Positives = 152/365 (41%), Gaps = 35/365 (9%)
Query: 468 TMASSDDNQASRDAQELLENLSFSDDNVVQMAKANYFKHLLQRLSAGPESVKMRMATTLA 527
TM +++D + +R L NLS + ++ + K+ L++ L + +SV TTL
Sbjct: 67 TMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLH 126
Query: 528 EMELTDHHKASLLEGNVLGPL---LHLVSRGDIQMKKVAVKALRNLSSVPQNGLQMIKEG 584
+ L H + + + + G L + L+++ +++ + L+ L+ Q ++I
Sbjct: 127 NLLL--HQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQES-KLIILA 183
Query: 585 AVGPLVDXXXXXXXXXXXXREETATAIMHLAVSTMYQESSQTPVTLLESDKEIFMLFSLI 644
+ GP T+ + L+V SS P + + L
Sbjct: 184 SGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC-----SSNKPAIVEAGGMQALGL---- 234
Query: 645 NLTGPNVQQRILQTFNALCRSPSAGNIKTTLTQCSAIPVLVQLCEHDNENVRANAVKLFC 704
+LT P+ QR++Q R+ S K + + LVQL D+ NV A +
Sbjct: 235 HLTDPS--QRLVQNCLWTLRNLSDAATKQEGME-GLLGTLVQLLGSDDINVVTCAAGILS 291
Query: 705 CLV-DDGDEAIIREHVGQKCLETLV-TIIQSSHNEEEIASAMGILSKLPEVPQFTQWLLD 762
L ++ ++ VG +E LV T++++ E+ A+ L L Q + +
Sbjct: 292 NLTCNNYKNKMMVCQVGG--IEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQN 349
Query: 763 A----GALPIVLNFLKNGRQNDPNRFQVVENAVGALRRFT-APTNLEWQKRAAEAGVIPK 817
A LP+V+ L + P+ + +++ VG +R P N E G IP+
Sbjct: 350 AVRLHYGLPVVVKLL-----HPPSHWPLIKATVGLIRNLALCPAN---HAPLREQGAIPR 401
Query: 818 LVQLL 822
LVQLL
Sbjct: 402 LVQLL 406
>pdb|1JPW|A Chain A, Crystal Structure Of A Human Tcf-4 BETA-Catenin Complex
pdb|1JPW|B Chain B, Crystal Structure Of A Human Tcf-4 BETA-Catenin Complex
pdb|1JPW|C Chain C, Crystal Structure Of A Human Tcf-4 BETA-Catenin Complex
Length = 540
Score = 34.7 bits (78), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 83/365 (22%), Positives = 152/365 (41%), Gaps = 35/365 (9%)
Query: 468 TMASSDDNQASRDAQELLENLSFSDDNVVQMAKANYFKHLLQRLSAGPESVKMRMATTLA 527
TM +++D + +R L NLS + ++ + K+ L++ L + +SV TTL
Sbjct: 71 TMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLH 130
Query: 528 EMELTDHHKASLLEGNVLGPL---LHLVSRGDIQMKKVAVKALRNLSSVPQNGLQMIKEG 584
+ L H + + + + G L + L+++ +++ + L+ L+ Q ++I
Sbjct: 131 NLLL--HQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQES-KLIILA 187
Query: 585 AVGPLVDXXXXXXXXXXXXREETATAIMHLAVSTMYQESSQTPVTLLESDKEIFMLFSLI 644
+ GP T+ + L+V SS P + + L
Sbjct: 188 SGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC-----SSNKPAIVEAGGMQALGL---- 238
Query: 645 NLTGPNVQQRILQTFNALCRSPSAGNIKTTLTQCSAIPVLVQLCEHDNENVRANAVKLFC 704
+LT P+ QR++Q R+ S K + + LVQL D+ NV A +
Sbjct: 239 HLTDPS--QRLVQNCLWTLRNLSDAATKQEGME-GLLGTLVQLLGSDDINVVTCAAGILS 295
Query: 705 CLV-DDGDEAIIREHVGQKCLETLV-TIIQSSHNEEEIASAMGILSKLPEVPQFTQWLLD 762
L ++ ++ VG +E LV T++++ E+ A+ L L Q + +
Sbjct: 296 NLTCNNYKNKMMVCQVGG--IEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQN 353
Query: 763 A----GALPIVLNFLKNGRQNDPNRFQVVENAVGALRRFT-APTNLEWQKRAAEAGVIPK 817
A LP+V+ L + P+ + +++ VG +R P N E G IP+
Sbjct: 354 AVRLHYGLPVVVKLL-----HPPSHWPLIKATVGLIRNLALCPAN---HAPLREQGAIPR 405
Query: 818 LVQLL 822
LVQLL
Sbjct: 406 LVQLL 410
>pdb|4DJS|A Chain A, Structure Of Beta-Catenin In Complex With A Stapled
Peptide Inhibitor
Length = 518
Score = 34.7 bits (78), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 83/365 (22%), Positives = 152/365 (41%), Gaps = 35/365 (9%)
Query: 468 TMASSDDNQASRDAQELLENLSFSDDNVVQMAKANYFKHLLQRLSAGPESVKMRMATTLA 527
TM +++D + +R L NLS + ++ + K+ L++ L + +SV TTL
Sbjct: 54 TMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLH 113
Query: 528 EMELTDHHKASLLEGNVLGPL---LHLVSRGDIQMKKVAVKALRNLSSVPQNGLQMIKEG 584
+ L H + + + + G L + L+++ +++ + L+ L+ Q ++I
Sbjct: 114 NLLL--HQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQES-KLIILA 170
Query: 585 AVGPLVDXXXXXXXXXXXXREETATAIMHLAVSTMYQESSQTPVTLLESDKEIFMLFSLI 644
+ GP T+ + L+V SS P + + L
Sbjct: 171 SGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC-----SSNKPAIVEAGGMQALGL---- 221
Query: 645 NLTGPNVQQRILQTFNALCRSPSAGNIKTTLTQCSAIPVLVQLCEHDNENVRANAVKLFC 704
+LT P+ QR++Q R+ S K + + LVQL D+ NV A +
Sbjct: 222 HLTDPS--QRLVQNCLWTLRNLSDAATKQEGME-GLLGTLVQLLGSDDINVVTCAAGILS 278
Query: 705 CLV-DDGDEAIIREHVGQKCLETLV-TIIQSSHNEEEIASAMGILSKLPEVPQFTQWLLD 762
L ++ ++ VG +E LV T++++ E+ A+ L L Q + +
Sbjct: 279 NLTCNNYKNKMMVCQVGG--IEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQN 336
Query: 763 A----GALPIVLNFLKNGRQNDPNRFQVVENAVGALRRFT-APTNLEWQKRAAEAGVIPK 817
A LP+V+ L + P+ + +++ VG +R P N E G IP+
Sbjct: 337 AVRLHYGLPVVVKLL-----HPPSHWPLIKATVGLIRNLALCPAN---HAPLREQGAIPR 388
Query: 818 LVQLL 822
LVQLL
Sbjct: 389 LVQLL 393
>pdb|1QZ7|A Chain A, Beta-Catenin Binding Domain Of Axin In Complex With Beta-
Catenin
Length = 533
Score = 34.7 bits (78), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 83/365 (22%), Positives = 152/365 (41%), Gaps = 35/365 (9%)
Query: 468 TMASSDDNQASRDAQELLENLSFSDDNVVQMAKANYFKHLLQRLSAGPESVKMRMATTLA 527
TM +++D + +R L NLS + ++ + K+ L++ L + +SV TTL
Sbjct: 69 TMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLH 128
Query: 528 EMELTDHHKASLLEGNVLGPL---LHLVSRGDIQMKKVAVKALRNLSSVPQNGLQMIKEG 584
+ L H + + + + G L + L+++ +++ + L+ L+ Q ++I
Sbjct: 129 NLLL--HQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQES-KLIILA 185
Query: 585 AVGPLVDXXXXXXXXXXXXREETATAIMHLAVSTMYQESSQTPVTLLESDKEIFMLFSLI 644
+ GP T+ + L+V SS P + + L
Sbjct: 186 SGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC-----SSNKPAIVEAGGMQALGL---- 236
Query: 645 NLTGPNVQQRILQTFNALCRSPSAGNIKTTLTQCSAIPVLVQLCEHDNENVRANAVKLFC 704
+LT P+ QR++Q R+ S K + + LVQL D+ NV A +
Sbjct: 237 HLTDPS--QRLVQNCLWTLRNLSDAATKQEGME-GLLGTLVQLLGSDDINVVTCAAGILS 293
Query: 705 CLV-DDGDEAIIREHVGQKCLETLV-TIIQSSHNEEEIASAMGILSKLPEVPQFTQWLLD 762
L ++ ++ VG +E LV T++++ E+ A+ L L Q + +
Sbjct: 294 NLTCNNYKNKMMVCQVGG--IEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQN 351
Query: 763 A----GALPIVLNFLKNGRQNDPNRFQVVENAVGALRRFT-APTNLEWQKRAAEAGVIPK 817
A LP+V+ L + P+ + +++ VG +R P N E G IP+
Sbjct: 352 AVRLHYGLPVVVKLL-----HPPSHWPLIKATVGLIRNLALCPAN---HAPLREQGAIPR 403
Query: 818 LVQLL 822
LVQLL
Sbjct: 404 LVQLL 408
>pdb|1G3J|A Chain A, Crystal Structure Of The Xtcf3-CbdBETA-Catenin Armadillo
Repeat Complex
pdb|1G3J|C Chain C, Crystal Structure Of The Xtcf3-CbdBETA-Catenin Armadillo
Repeat Complex
pdb|1TH1|A Chain A, Beta-Catenin In Complex With A Phosphorylated Apc 20aa
Repeat Fragment
pdb|1TH1|B Chain B, Beta-Catenin In Complex With A Phosphorylated Apc 20aa
Repeat Fragment
Length = 532
Score = 34.3 bits (77), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 83/365 (22%), Positives = 152/365 (41%), Gaps = 35/365 (9%)
Query: 468 TMASSDDNQASRDAQELLENLSFSDDNVVQMAKANYFKHLLQRLSAGPESVKMRMATTLA 527
TM +++D + +R L NLS + ++ + K+ L++ L + +SV TTL
Sbjct: 69 TMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLH 128
Query: 528 EMELTDHHKASLLEGNVLGPL---LHLVSRGDIQMKKVAVKALRNLSSVPQNGLQMIKEG 584
+ L H + + + + G L + L+++ +++ + L+ L+ Q ++I
Sbjct: 129 NLLL--HQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQES-KLIILA 185
Query: 585 AVGPLVDXXXXXXXXXXXXREETATAIMHLAVSTMYQESSQTPVTLLESDKEIFMLFSLI 644
+ GP T+ + L+V SS P + + L
Sbjct: 186 SGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC-----SSNKPAIVEAGGMQALGL---- 236
Query: 645 NLTGPNVQQRILQTFNALCRSPSAGNIKTTLTQCSAIPVLVQLCEHDNENVRANAVKLFC 704
+LT P+ QR++Q R+ S K + + LVQL D+ NV A +
Sbjct: 237 HLTDPS--QRLVQNCLWTLRNLSDAATKQEGME-GLLGTLVQLLGSDDINVVTCAAGILS 293
Query: 705 CLV-DDGDEAIIREHVGQKCLETLV-TIIQSSHNEEEIASAMGILSKLPEVPQFTQWLLD 762
L ++ ++ VG +E LV T++++ E+ A+ L L Q + +
Sbjct: 294 NLTCNNYKNKMMVCQVGG--IEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQN 351
Query: 763 A----GALPIVLNFLKNGRQNDPNRFQVVENAVGALRRFT-APTNLEWQKRAAEAGVIPK 817
A LP+V+ L + P+ + +++ VG +R P N E G IP+
Sbjct: 352 AVRLHYGLPVVVKLL-----HPPSHWPLIKATVGLIRNLALCPAN---HAPLREQGAIPR 403
Query: 818 LVQLL 822
LVQLL
Sbjct: 404 LVQLL 408
>pdb|1T08|A Chain A, Crystal Structure Of Beta-CateninICAT HELICAL
DomainUNPHOSPHORYLATED APC R3
Length = 519
Score = 34.3 bits (77), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 83/365 (22%), Positives = 152/365 (41%), Gaps = 35/365 (9%)
Query: 468 TMASSDDNQASRDAQELLENLSFSDDNVVQMAKANYFKHLLQRLSAGPESVKMRMATTLA 527
TM +++D + +R L NLS + ++ + K+ L++ L + +SV TTL
Sbjct: 56 TMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLH 115
Query: 528 EMELTDHHKASLLEGNVLGPL---LHLVSRGDIQMKKVAVKALRNLSSVPQNGLQMIKEG 584
+ L H + + + + G L + L+++ +++ + L+ L+ Q ++I
Sbjct: 116 NLLL--HQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQES-KLIILA 172
Query: 585 AVGPLVDXXXXXXXXXXXXREETATAIMHLAVSTMYQESSQTPVTLLESDKEIFMLFSLI 644
+ GP T+ + L+V SS P + + L
Sbjct: 173 SGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC-----SSNKPAIVEAGGMQALGL---- 223
Query: 645 NLTGPNVQQRILQTFNALCRSPSAGNIKTTLTQCSAIPVLVQLCEHDNENVRANAVKLFC 704
+LT P+ QR++Q R+ S K + + LVQL D+ NV A +
Sbjct: 224 HLTDPS--QRLVQNCLWTLRNLSDAATKQEGME-GLLGTLVQLLGSDDINVVTCAAGILS 280
Query: 705 CLV-DDGDEAIIREHVGQKCLETLV-TIIQSSHNEEEIASAMGILSKLPEVPQFTQWLLD 762
L ++ ++ VG +E LV T++++ E+ A+ L L Q + +
Sbjct: 281 NLTCNNYKNKMMVCQVGG--IEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQN 338
Query: 763 A----GALPIVLNFLKNGRQNDPNRFQVVENAVGALRRFT-APTNLEWQKRAAEAGVIPK 817
A LP+V+ L + P+ + +++ VG +R P N E G IP+
Sbjct: 339 AVRLHYGLPVVVKLL-----HPPSHWPLIKATVGLIRNLALCPAN---HAPLREQGAIPR 390
Query: 818 LVQLL 822
LVQLL
Sbjct: 391 LVQLL 395
>pdb|2OXQ|C Chain C, Structure Of The Ubch5 :chip U-Box Complex
pdb|2OXQ|D Chain D, Structure Of The Ubch5 :chip U-Box Complex
Length = 80
Score = 34.3 bits (77), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 42/80 (52%), Gaps = 2/80 (2%)
Query: 254 SLGSQPLEPLQSFYC-PITRDVMVDPVETSSGQTFERSAIEKWFSDGNNLCPLTMTVLDT 312
++GS+ E + + C I+ ++M +P T SG T++R IE+ + P+T + L
Sbjct: 2 AMGSKKRE-IPDYLCGKISFELMAEPCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQ 60
Query: 313 SILRPNKTLRQSIEEWKDRN 332
L PN +++ I+ + N
Sbjct: 61 DQLIPNLAMKEVIDAFIQEN 80
>pdb|1LUJ|A Chain A, Crystal Structure Of The Beta-CateninICAT COMPLEX
Length = 514
Score = 34.3 bits (77), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 83/365 (22%), Positives = 152/365 (41%), Gaps = 35/365 (9%)
Query: 468 TMASSDDNQASRDAQELLENLSFSDDNVVQMAKANYFKHLLQRLSAGPESVKMRMATTLA 527
TM +++D + +R L NLS + ++ + K+ L++ L + +SV TTL
Sbjct: 52 TMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLH 111
Query: 528 EMELTDHHKASLLEGNVLGPL---LHLVSRGDIQMKKVAVKALRNLSSVPQNGLQMIKEG 584
+ L H + + + + G L + L+++ +++ + L+ L+ Q ++I
Sbjct: 112 NLLL--HQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQES-KLIILA 168
Query: 585 AVGPLVDXXXXXXXXXXXXREETATAIMHLAVSTMYQESSQTPVTLLESDKEIFMLFSLI 644
+ GP T+ + L+V SS P + + L
Sbjct: 169 SGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC-----SSNKPAIVEAGGMQALGL---- 219
Query: 645 NLTGPNVQQRILQTFNALCRSPSAGNIKTTLTQCSAIPVLVQLCEHDNENVRANAVKLFC 704
+LT P+ QR++Q R+ S K + + LVQL D+ NV A +
Sbjct: 220 HLTDPS--QRLVQNCLWTLRNLSDAATKQEGME-GLLGTLVQLLGSDDINVVTCAAGILS 276
Query: 705 CLV-DDGDEAIIREHVGQKCLETLV-TIIQSSHNEEEIASAMGILSKLPEVPQFTQWLLD 762
L ++ ++ VG +E LV T++++ E+ A+ L L Q + +
Sbjct: 277 NLTCNNYKNKMMVCQVGG--IEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQN 334
Query: 763 A----GALPIVLNFLKNGRQNDPNRFQVVENAVGALRRFT-APTNLEWQKRAAEAGVIPK 817
A LP+V+ L + P+ + +++ VG +R P N E G IP+
Sbjct: 335 AVRLHYGLPVVVKLL-----HPPSHWPLIKATVGLIRNLALCPAN---HAPLREQGAIPR 386
Query: 818 LVQLL 822
LVQLL
Sbjct: 387 LVQLL 391
>pdb|2ECI|A Chain A, Solution Structure Of The Ring Domain Of The Human Tnf
Receptor-Associated Factor 6 Protein
Length = 86
Score = 34.3 bits (77), Expect = 0.35, Method: Composition-based stats.
Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Query: 262 PLQSFY-CPITRDVMVDPVETSSGQTFERSAIEKWFSDGNNLCPLTMTVLDTSILRPNKT 320
PL+S Y CPI + + V+T G F ++ I K D + CP+ +L + L P+
Sbjct: 21 PLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNF 80
Query: 321 LRQSI 325
++ I
Sbjct: 81 AKREI 85
>pdb|2Z6G|A Chain A, Crystal Structure Of A Full-Length Zebrafish Beta-Catenin
Length = 780
Score = 33.9 bits (76), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 98/454 (21%), Positives = 178/454 (39%), Gaps = 76/454 (16%)
Query: 379 IPKLIYLLGSKNRDVRNRALIILHILVKDSNDTKERLANGDDAVESIVRSLGRRIEERKL 438
IP+L LL +++ V N+A +++H L K ++ + V +IVR
Sbjct: 152 IPELTKLLNDEDQVVVNKAAVMVHQLSK-KEASRHAIMRSPQMVSAIVR----------- 199
Query: 439 AVALLLELSTCNTLRDQIGDVQGCILLLVTMASSDDNQASRDAQELLENLSFSDDNVVQM 498
TM +++D + +R L NLS + ++ +
Sbjct: 200 -----------------------------TMQNTNDVETARCTSGTLHNLSHHREGLLAI 230
Query: 499 AKANYFKHLLQRLSAGPESVKMRMATTLAEMELTDHHKASLLEGNVLGPL---LHLVSRG 555
K+ L+ L + +SV TTL + L H + + + + G L + L+++
Sbjct: 231 FKSGGIPALVNMLGSPVDSVLFHAITTLHNLLL--HQEGAKMAVRLAGGLQKMVALLNKT 288
Query: 556 DIQMKKVAVKALRNLSSVPQNGLQMIKEGAVGPLVDXXXXXXXXXXXXREETATAIMHLA 615
+++ + L+ L+ Q ++I + GP T+ + L+
Sbjct: 289 NVKFLAITTDCLQILAYGNQES-KLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLS 347
Query: 616 VSTMYQESSQTPVTLLESDKEIFMLFSLINLTGPNVQQRILQTFNALCRSPSAGNIKTTL 675
V SS P + + L +LT P+ QR++Q R+ S K
Sbjct: 348 VC-----SSNKPAIVEAGGMQALGL----HLTDPS--QRLVQNCLWTLRNLSDAATKQEG 396
Query: 676 TQCSAIPVLVQLCEHDNENVRANAVKLFCCLV-DDGDEAIIREHVGQKCLETLV-TIIQS 733
+ + LVQL D+ NV A + L ++ ++ VG +E LV T++++
Sbjct: 397 ME-GLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVG--GIEALVRTVLRA 453
Query: 734 SHNEEEIASAMGILSKLPEVPQFTQWLLDA----GALPIVLNFLKNGRQNDPNRFQVVEN 789
E+ A+ L L Q + +A LP+V+ L + P+ + +++
Sbjct: 454 GDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLL-----HPPSHWPLIKA 508
Query: 790 AVGALRRFT-APTNLEWQKRAAEAGVIPKLVQLL 822
VG +R P N E G IP+LVQLL
Sbjct: 509 TVGLIRNLALCPAN---HAPLREQGAIPRLVQLL 539
>pdb|3HCS|A Chain A, Crystal Structure Of The N-Terminal Domain Of Traf6
pdb|3HCS|B Chain B, Crystal Structure Of The N-Terminal Domain Of Traf6
Length = 170
Score = 33.9 bits (76), Expect = 0.46, Method: Composition-based stats.
Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Query: 262 PLQSFY-CPITRDVMVDPVETSSGQTFERSAIEKWFSDGNNLCPLTMTVLDTSILRPNKT 320
PL+S Y CPI + + V+T G F ++ I K D + CP+ +L + L P+
Sbjct: 14 PLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNF 73
Query: 321 LRQSI 325
++ I
Sbjct: 74 AKREI 78
>pdb|3HCT|A Chain A, Crystal Structure Of Traf6 In Complex With Ubc13 In The P1
Space Group
pdb|3HCU|A Chain A, Crystal Structure Of Traf6 In Complex With Ubc13 In The C2
Space Group
pdb|3HCU|C Chain C, Crystal Structure Of Traf6 In Complex With Ubc13 In The C2
Space Group
Length = 118
Score = 33.9 bits (76), Expect = 0.48, Method: Composition-based stats.
Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Query: 262 PLQSFY-CPITRDVMVDPVETSSGQTFERSAIEKWFSDGNNLCPLTMTVLDTSILRPNKT 320
PL+S Y CPI + + V+T G F ++ I K D + CP+ +L + L P+
Sbjct: 14 PLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNF 73
Query: 321 LRQSI 325
++ I
Sbjct: 74 AKREI 78
>pdb|1WGM|A Chain A, Solution Structure Of The U-Box In Human Ubiquitin
Conjugation Factor E4a
Length = 98
Score = 33.9 bits (76), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 33/68 (48%), Gaps = 10/68 (14%)
Query: 266 FYCPITRDVMVDPVETSSGQ-TFERSAIEKWF----SDGNNLCPLTMTVLDTSILRPNKT 320
F PI +M DPV S + T +RS I + +D N PLTM +RPN
Sbjct: 23 FLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLTM-----DQIRPNTE 77
Query: 321 LRQSIEEW 328
L++ I+ W
Sbjct: 78 LKEKIQRW 85
>pdb|2C2L|A Chain A, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
pdb|2C2L|B Chain B, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
pdb|2C2L|C Chain C, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
pdb|2C2L|D Chain D, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
Length = 281
Score = 33.5 bits (75), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 34/66 (51%)
Query: 270 ITRDVMVDPVETSSGQTFERSAIEKWFSDGNNLCPLTMTVLDTSILRPNKTLRQSIEEWK 329
I+ ++M +P T SG T++R IE+ + P+T + L L PN +++ I+ +
Sbjct: 213 ISFELMREPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLIPNLAMKEVIDAFI 272
Query: 330 DRNTMI 335
N +
Sbjct: 273 SENGWV 278
>pdb|2C2V|S Chain S, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|T Chain T, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|U Chain U, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|V Chain V, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
Length = 78
Score = 33.5 bits (75), Expect = 0.67, Method: Composition-based stats.
Identities = 18/63 (28%), Positives = 33/63 (52%)
Query: 270 ITRDVMVDPVETSSGQTFERSAIEKWFSDGNNLCPLTMTVLDTSILRPNKTLRQSIEEWK 329
I+ ++M +P T SG T++R IE+ + P+T + L L PN +++ I+ +
Sbjct: 10 ISFELMREPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLIPNLAMKEVIDAFI 69
Query: 330 DRN 332
N
Sbjct: 70 SEN 72
>pdb|3IFQ|A Chain A, Interction Of Plakoglobin And Beta-Catenin With Desmosomal
Cadherins
pdb|3IFQ|B Chain B, Interction Of Plakoglobin And Beta-Catenin With Desmosomal
Cadherins
Length = 553
Score = 32.7 bits (73), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 33/71 (46%), Gaps = 9/71 (12%)
Query: 765 ALPIVLNFLKNGRQNDPNRFQVVENAVGALRRFT-APTNLEWQKRAAEAGVIPKLVQLLE 823
+P ++ L N PN++ +V+ +G +R P N EA VIP+LVQLL
Sbjct: 358 GIPAIVKLL-----NQPNQWPLVKATIGLIRNLALCPAN---HAPLQEAAVIPRLVQLLV 409
Query: 824 YGTTLTKEHAA 834
+ H A
Sbjct: 410 KAHQDAQRHVA 420
>pdb|4FVM|A Chain A, Crystal Structure Of Yeast Dna Polymerase Alpha
pdb|4FXD|A Chain A, Crystal Structure Of Yeast Dna Polymerase Alpha Bound To
Dna/rna
pdb|4FXD|B Chain B, Crystal Structure Of Yeast Dna Polymerase Alpha Bound To
Dna/rna
Length = 910
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 42/71 (59%), Gaps = 3/71 (4%)
Query: 5 DVVTSASTVPASEALSQIVEAILEVMIASNNVLIKKESF--KELAAYLERIVPVLKELNK 62
D + +A+ PA ++++ A+ EVMI SNN++ + + K++ A +ER++ + N
Sbjct: 828 DEIDNAADTPAL-SVAERAHALNEVMIKSNNLIPDPQYYLEKQIFAPVERLLERIDSFNV 886
Query: 63 RDLSHSEGLNS 73
LS + GL+S
Sbjct: 887 VRLSEALGLDS 897
>pdb|4FYD|A Chain A, Crystal Structure Of Yeast Dna Polymerase Alpha Bound To
Dna/rna And Dgtp
pdb|4FYD|B Chain B, Crystal Structure Of Yeast Dna Polymerase Alpha Bound To
Dna/rna And Dgtp
Length = 910
Score = 32.3 bits (72), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 42/71 (59%), Gaps = 3/71 (4%)
Query: 5 DVVTSASTVPASEALSQIVEAILEVMIASNNVLIKKESF--KELAAYLERIVPVLKELNK 62
D + +A+ PA ++++ A+ EVMI SNN++ + + K++ A +ER++ + N
Sbjct: 828 DEIDNAADTPAL-SVAERAHALNEVMIKSNNLIPDPQYYLEKQIFAPVERLLERIDSFNV 886
Query: 63 RDLSHSEGLNS 73
LS + GL+S
Sbjct: 887 VRLSEALGLDS 897
>pdb|3UF8|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With A G95a Surface Mutation From
Burkholderia Pseudomallei Complexed With Fk506
Length = 209
Score = 32.0 bits (71), Expect = 1.6, Method: Composition-based stats.
Identities = 36/125 (28%), Positives = 51/125 (40%), Gaps = 23/125 (18%)
Query: 707 VDDGDEAIIREHVGQKCLETLVTIIQSSHNEEEIASAMGILSKLPEVP--QFTQWLLDAG 764
+D D II H Q T+VT +S E++ G ++ + +T WL D
Sbjct: 79 LDMEDNDIIEAHREQIGGSTVVTT-ESGLKYEDLTEGSGAEARAGQTVSVHYTGWLTDGQ 137
Query: 765 ALPIVLNFLKNGRQNDPNRF-----QVVEN--------AVGALRRFTAPTNLEWQKRAAE 811
F + +NDP F V++ VG +RR T P L + R A
Sbjct: 138 ------KFDSSKDRNDPFAFVLGGGMVIKGWDEGVQGMKVGGVRRLTIPPQLGYGARGA- 190
Query: 812 AGVIP 816
AGVIP
Sbjct: 191 AGVIP 195
>pdb|2JMD|A Chain A, Solution Structure Of The Ring Domain Of Human Traf6
Length = 63
Score = 32.0 bits (71), Expect = 1.7, Method: Composition-based stats.
Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Query: 262 PLQSFY-CPITRDVMVDPVETSSGQTFERSAIEKWFSDGNNLCPLTMTVLDTSILRPN 318
PL S Y CPI + + V+T G F ++ I K D + CP+ +L + L P+
Sbjct: 2 PLGSKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPD 59
>pdb|2ONC|A Chain A, Crystal Structure Of Human Dpp-4
pdb|2ONC|B Chain B, Crystal Structure Of Human Dpp-4
pdb|2ONC|C Chain C, Crystal Structure Of Human Dpp-4
pdb|2ONC|D Chain D, Crystal Structure Of Human Dpp-4
Length = 731
Score = 32.0 bits (71), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 37/70 (52%), Gaps = 7/70 (10%)
Query: 923 GSKVLEDANAIDRMVRFLSSPSPKLQEKALDSVERIFRL---PEFKQKYGKSAQMPLVDL 979
G +VLED +A+D+M++ + PS KL L+ + +++ P F KS + PL+
Sbjct: 455 GLRVLEDNSALDKMLQNVQMPSKKLDFIILNETKFWYQMILPPHFD----KSKKYPLLLD 510
Query: 980 TQRGNSSMKS 989
G S K+
Sbjct: 511 VYAGPCSQKA 520
>pdb|2KRE|A Chain A, Solution Structure Of E4bUFD2A U-Box Domain
pdb|3L1X|A Chain A, Crystal Structure Of U-Box Domain Of Human E4b Ubiquitin
Ligase
pdb|3L1Z|B Chain B, Crystal Structure Of The U-Box Domain Of Human E4b
Ubiquitin Ligase In Complex With Ubch5c E2 Ubiquitin
Conjugating Enzyme
Length = 100
Score = 32.0 bits (71), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
Query: 266 FYCPITRDVMVDPVETSSGQTFERSAIEKWFSDGNNLCPLTMTVLDTSILRPNKTLRQSI 325
F P+ +M DPV SG +RS I + + P L S+L P L++ I
Sbjct: 30 FRDPLMDTLMTDPVRLPSGTIMDRSIILRHLLNSPT-DPFNRQTLTESMLEPVPELKEQI 88
Query: 326 EEW 328
+ W
Sbjct: 89 QAW 91
>pdb|1R9M|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv At 2.1
Ang. Resolution.
pdb|1R9M|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase Iv At 2.1
Ang. Resolution.
pdb|1R9M|C Chain C, Crystal Structure Of Human Dipeptidyl Peptidase Iv At 2.1
Ang. Resolution.
pdb|1R9M|D Chain D, Crystal Structure Of Human Dipeptidyl Peptidase Iv At 2.1
Ang. Resolution
Length = 733
Score = 32.0 bits (71), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 37/70 (52%), Gaps = 7/70 (10%)
Query: 923 GSKVLEDANAIDRMVRFLSSPSPKLQEKALDSVERIFRL---PEFKQKYGKSAQMPLVDL 979
G +VLED +A+D+M++ + PS KL L+ + +++ P F KS + PL+
Sbjct: 457 GLRVLEDNSALDKMLQNVQMPSKKLDFIILNETKFWYQMILPPHFD----KSKKYPLLLD 512
Query: 980 TQRGNSSMKS 989
G S K+
Sbjct: 513 VYAGPCSQKA 522
>pdb|1N1M|A Chain A, Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH AN
INHIBITOR
pdb|1N1M|B Chain B, Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH AN
INHIBITOR
pdb|1NU6|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv
(Dpp-Iv)
pdb|1NU6|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase Iv
(Dpp-Iv)
pdb|1NU8|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv
(Dpp-Iv) In Complex With Diprotin A (Ili)
pdb|1NU8|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase Iv
(Dpp-Iv) In Complex With Diprotin A (Ili)
pdb|1TK3|A Chain A, Crystal Structure Of Human Apo Dipeptidyl Peptidase IvCD26
pdb|1TK3|B Chain B, Crystal Structure Of Human Apo Dipeptidyl Peptidase IvCD26
pdb|1TKR|A Chain A, Human Dipeptidyl Peptidase IvCD26 INHIBITED WITH
DIISOPROPYL Fluorophosphate
pdb|1TKR|B Chain B, Human Dipeptidyl Peptidase IvCD26 INHIBITED WITH
DIISOPROPYL Fluorophosphate
pdb|1W1I|A Chain A, Crystal Structure Of Dipeptidyl Peptidase Iv (Dppiv Or
Cd26) In Complex With Adenosine Deaminase
pdb|1W1I|B Chain B, Crystal Structure Of Dipeptidyl Peptidase Iv (Dppiv Or
Cd26) In Complex With Adenosine Deaminase
pdb|1W1I|C Chain C, Crystal Structure Of Dipeptidyl Peptidase Iv (Dppiv Or
Cd26) In Complex With Adenosine Deaminase
pdb|1W1I|D Chain D, Crystal Structure Of Dipeptidyl Peptidase Iv (Dppiv Or
Cd26) In Complex With Adenosine Deaminase
pdb|1RWQ|A Chain A, Human Dipeptidyl Peptidase Iv In Complex With
5-Aminomethyl-6-(2,4-
Dichloro-Phenyl)-2-(3,
5-Dimethoxy-Phenyl)-Pyrimidin-4-Ylamine
pdb|1RWQ|B Chain B, Human Dipeptidyl Peptidase Iv In Complex With
5-Aminomethyl-6-(2,4-
Dichloro-Phenyl)-2-(3,
5-Dimethoxy-Phenyl)-Pyrimidin-4-Ylamine
pdb|2BGN|A Chain A, Hiv-1 Tat Protein Derived N-Terminal Nonapeptide Trp2-Tat
(1-9) Bound To The Active Site Of Dipeptidyl Peptidase
Iv (Cd26)
pdb|2BGN|B Chain B, Hiv-1 Tat Protein Derived N-Terminal Nonapeptide Trp2-Tat
(1-9) Bound To The Active Site Of Dipeptidyl Peptidase
Iv (Cd26)
pdb|2BGN|C Chain C, Hiv-1 Tat Protein Derived N-Terminal Nonapeptide Trp2-Tat
(1-9) Bound To The Active Site Of Dipeptidyl Peptidase
Iv (Cd26)
pdb|2BGN|D Chain D, Hiv-1 Tat Protein Derived N-Terminal Nonapeptide Trp2-Tat
(1-9) Bound To The Active Site Of Dipeptidyl Peptidase
Iv (Cd26)
pdb|2AJL|I Chain I, X-Ray Structure Of Novel Biaryl-Based Dipeptidyl Peptidase
Iv Inhibitor
pdb|2AJL|J Chain J, X-Ray Structure Of Novel Biaryl-Based Dipeptidyl Peptidase
Iv Inhibitor
pdb|2BUB|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Cd26)
In Complex With A Reversed Amide Inhibitor
pdb|2BUB|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Cd26)
In Complex With A Reversed Amide Inhibitor
pdb|2OGZ|A Chain A, Crystal Structure Of Dpp-Iv Complexed With Lilly Aryl
Ketone Inhibitor
pdb|2OGZ|B Chain B, Crystal Structure Of Dpp-Iv Complexed With Lilly Aryl
Ketone Inhibitor
pdb|2OQI|A Chain A, Human Dipeptidyl Peptidase Iv (Dpp4) With Piperidinone-
Constrained Phenethylamine
pdb|2OQI|B Chain B, Human Dipeptidyl Peptidase Iv (Dpp4) With Piperidinone-
Constrained Phenethylamine
pdb|2OQI|C Chain C, Human Dipeptidyl Peptidase Iv (Dpp4) With Piperidinone-
Constrained Phenethylamine
pdb|2OQI|D Chain D, Human Dipeptidyl Peptidase Iv (Dpp4) With Piperidinone-
Constrained Phenethylamine
pdb|2OLE|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dppiv)
Complex With Cyclic Hydrazine Derivatives
pdb|2OLE|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dppiv)
Complex With Cyclic Hydrazine Derivatives
pdb|3BJM|A Chain A, Crystal Structure Of Human Dpp-Iv In Complex With (1s,3s,
5s)-2-[(2s)-
2-Amino-2-(3-Hydroxytricyclo[3.3.1.13,7]dec-1-
Yl)acetyl]-2- Azabicyclo[3.1.0]hexane-3-Carbonitrile
(Cas), (1s,3s,5s)-2-((2s)-2-
Amino-2-(3-Hydroxyadamantan-1-
Yl)acetyl)-2-Azabicyclo[3.1.0]hexane- 3-Carbonitrile
(Iupac), Or Bms-477118
pdb|3BJM|B Chain B, Crystal Structure Of Human Dpp-Iv In Complex With (1s,3s,
5s)-2-[(2s)-
2-Amino-2-(3-Hydroxytricyclo[3.3.1.13,7]dec-1-
Yl)acetyl]-2- Azabicyclo[3.1.0]hexane-3-Carbonitrile
(Cas), (1s,3s,5s)-2-((2s)-2-
Amino-2-(3-Hydroxyadamantan-1-
Yl)acetyl)-2-Azabicyclo[3.1.0]hexane- 3-Carbonitrile
(Iupac), Or Bms-477118
pdb|3EIO|A Chain A, Crystal Structure Analysis Of Dppiv Inhibitor
pdb|3EIO|B Chain B, Crystal Structure Analysis Of Dppiv Inhibitor
pdb|3H0C|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Cd26)
In Complex With A Reversed Amide Inhibitor
pdb|3H0C|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Cd26)
In Complex With A Reversed Amide Inhibitor
pdb|3KWF|A Chain A, Human Dpp-Iv With Carmegliptin
(S)-1-((2s,3s,11bs)-2-Amino-
9,10-Dimethoxy-1,3,4,6,7,11b-Hexahydro-2h-Pyrido[2,1-
A]isoquinolin-3-Yl)-4-Fluoromethyl-Pyrrolidin-2-One
pdb|3KWF|B Chain B, Human Dpp-Iv With Carmegliptin
(S)-1-((2s,3s,11bs)-2-Amino-
9,10-Dimethoxy-1,3,4,6,7,11b-Hexahydro-2h-Pyrido[2,1-
A]isoquinolin-3-Yl)-4-Fluoromethyl-Pyrrolidin-2-One
pdb|3OC0|A Chain A, Structure Of Human Dpp-Iv With Hts Hit
(2s,3s,11bs)-3-Butyl-9,10-
Dimethoxy-1,3,4,6,7,11b-Hexahydro-2h-Pyrido[2,
1-A]isoquinolin-2- Ylamine
pdb|3OC0|B Chain B, Structure Of Human Dpp-Iv With Hts Hit
(2s,3s,11bs)-3-Butyl-9,10-
Dimethoxy-1,3,4,6,7,11b-Hexahydro-2h-Pyrido[2,
1-A]isoquinolin-2- Ylamine
pdb|3KWJ|A Chain A, Strucutre Of Human Dpp-Iv With
(2s,3s,11bs)-3-(3-Fluoromethyl-Phenyl)-
9,10-Dimethoxy-1,3,4,6,7,11b-Hexahydro-2h-Pyrido[2,
1-A]isoquinolin-2- Ylamine
pdb|3KWJ|B Chain B, Strucutre Of Human Dpp-Iv With
(2s,3s,11bs)-3-(3-Fluoromethyl-Phenyl)-
9,10-Dimethoxy-1,3,4,6,7,11b-Hexahydro-2h-Pyrido[2,
1-A]isoquinolin-2- Ylamine
pdb|4DSA|A Chain A, Crystal Structure Of Dpp-iv With Compound C1
pdb|4DSA|B Chain B, Crystal Structure Of Dpp-iv With Compound C1
pdb|4DSZ|A Chain A, Crystal Structure Of Dpp-iv With Compound C2
pdb|4DSZ|B Chain B, Crystal Structure Of Dpp-iv With Compound C2
pdb|4DTC|A Chain A, Crystal Structure Of Dpp-iv With Compound C5
pdb|4DTC|B Chain B, Crystal Structure Of Dpp-iv With Compound C5
Length = 728
Score = 32.0 bits (71), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 37/70 (52%), Gaps = 7/70 (10%)
Query: 923 GSKVLEDANAIDRMVRFLSSPSPKLQEKALDSVERIFRL---PEFKQKYGKSAQMPLVDL 979
G +VLED +A+D+M++ + PS KL L+ + +++ P F KS + PL+
Sbjct: 452 GLRVLEDNSALDKMLQNVQMPSKKLDFIILNETKFWYQMILPPHFD----KSKKYPLLLD 507
Query: 980 TQRGNSSMKS 989
G S K+
Sbjct: 508 VYAGPCSQKA 517
>pdb|2RGU|A Chain A, Crystal Structure Of Complex Of Human Dpp4 And Inhibitor
pdb|2RGU|B Chain B, Crystal Structure Of Complex Of Human Dpp4 And Inhibitor
Length = 734
Score = 32.0 bits (71), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 37/70 (52%), Gaps = 7/70 (10%)
Query: 923 GSKVLEDANAIDRMVRFLSSPSPKLQEKALDSVERIFRL---PEFKQKYGKSAQMPLVDL 979
G +VLED +A+D+M++ + PS KL L+ + +++ P F KS + PL+
Sbjct: 452 GLRVLEDNSALDKMLQNVQMPSKKLDFIILNETKFWYQMILPPHFD----KSKKYPLLLD 507
Query: 980 TQRGNSSMKS 989
G S K+
Sbjct: 508 VYAGPCSQKA 517
>pdb|2QT9|A Chain A, Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH A 4-Aryl
Cyclohexylalanine Inhibitor
pdb|2QT9|B Chain B, Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH A 4-Aryl
Cyclohexylalanine Inhibitor
pdb|2QTB|A Chain A, Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH A 4-Aryl
Cyclohexylalanine Inhibitor
pdb|2QTB|B Chain B, Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH A 4-Aryl
Cyclohexylalanine Inhibitor
Length = 766
Score = 32.0 bits (71), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 37/70 (52%), Gaps = 7/70 (10%)
Query: 923 GSKVLEDANAIDRMVRFLSSPSPKLQEKALDSVERIFRL---PEFKQKYGKSAQMPLVDL 979
G +VLED +A+D+M++ + PS KL L+ + +++ P F KS + PL+
Sbjct: 490 GLRVLEDNSALDKMLQNVQMPSKKLDFIILNETKFWYQMILPPHFD----KSKKYPLLLD 545
Query: 980 TQRGNSSMKS 989
G S K+
Sbjct: 546 VYAGPCSQKA 555
>pdb|1X70|A Chain A, Human Dipeptidyl Peptidase Iv In Complex With A Beta Amino
Acid Inhibitor
pdb|1X70|B Chain B, Human Dipeptidyl Peptidase Iv In Complex With A Beta Amino
Acid Inhibitor
pdb|2FJP|A Chain A, Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH AN
INHIBITOR
pdb|2FJP|B Chain B, Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH AN
INHIBITOR
pdb|2HHA|A Chain A, The Structure Of Dpp4 In Complex With An Oxadiazole
Inhibitor
pdb|2HHA|B Chain B, The Structure Of Dpp4 In Complex With An Oxadiazole
Inhibitor
pdb|2IIT|A Chain A, Human Dipeptidyl Peptidase 4 In Complex With A
Diazepan-2-one Inhibitor
pdb|2IIT|B Chain B, Human Dipeptidyl Peptidase 4 In Complex With A
Diazepan-2-one Inhibitor
pdb|2IIV|A Chain A, Human Dipeptidyl Peptidase 4 In Complex With A
Diazepan-2-One Inhibitor
pdb|2IIV|B Chain B, Human Dipeptidyl Peptidase 4 In Complex With A
Diazepan-2-One Inhibitor
pdb|2OPH|A Chain A, Human Dipeptidyl Peptidase Iv In Complex With An Alpha
Amino Acid Inhibitor
pdb|2OPH|B Chain B, Human Dipeptidyl Peptidase Iv In Complex With An Alpha
Amino Acid Inhibitor
pdb|2P8S|A Chain A, Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH A
CYCLOHEXALAMINE Inhibitor
pdb|2P8S|B Chain B, Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH A
CYCLOHEXALAMINE Inhibitor
pdb|2QOE|A Chain A, Human Dipeptidyl Peptidase Iv In Complex With A
Triazolopiperazine- Based Beta Amino Acid Inhibitor
pdb|2QOE|B Chain B, Human Dipeptidyl Peptidase Iv In Complex With A
Triazolopiperazine- Based Beta Amino Acid Inhibitor
pdb|3C43|A Chain A, Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH A
FLOUROOLEFIN Inhibitor
pdb|3C43|B Chain B, Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH A
FLOUROOLEFIN Inhibitor
pdb|3C45|A Chain A, Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH A
FLUOROOLEFIN Inhibitor
pdb|3C45|B Chain B, Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH A
FLUOROOLEFIN Inhibitor
pdb|3D4L|A Chain A, Human Dipeptidyl Peptidase Iv/cd26 In Complex With A Novel
Inhibitor
pdb|3D4L|B Chain B, Human Dipeptidyl Peptidase Iv/cd26 In Complex With A Novel
Inhibitor
pdb|2QKY|A Chain A, Complex Structure Of Dipeptidyl Peptidase Iv And A
Oxadiazolyl Ketone
pdb|2QKY|B Chain B, Complex Structure Of Dipeptidyl Peptidase Iv And A
Oxadiazolyl Ketone
pdb|2QKY|C Chain C, Complex Structure Of Dipeptidyl Peptidase Iv And A
Oxadiazolyl Ketone
pdb|2QKY|D Chain D, Complex Structure Of Dipeptidyl Peptidase Iv And A
Oxadiazolyl Ketone
pdb|3HAB|A Chain A, The Structure Of Dpp4 In Complex With Piperidine Fused
Benzimidazole 25
pdb|3HAB|B Chain B, The Structure Of Dpp4 In Complex With Piperidine Fused
Benzimidazole 25
pdb|3HAC|A Chain A, The Structure Of Dpp-4 In Complex With Piperidine Fused
Imidazopyridine 34
pdb|3HAC|B Chain B, The Structure Of Dpp-4 In Complex With Piperidine Fused
Imidazopyridine 34
Length = 728
Score = 32.0 bits (71), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 37/70 (52%), Gaps = 7/70 (10%)
Query: 923 GSKVLEDANAIDRMVRFLSSPSPKLQEKALDSVERIFRL---PEFKQKYGKSAQMPLVDL 979
G +VLED +A+D+M++ + PS KL L+ + +++ P F KS + PL+
Sbjct: 452 GLRVLEDNSALDKMLQNVQMPSKKLDFIILNETKFWYQMILPPHFD----KSKKYPLLLD 507
Query: 980 TQRGNSSMKS 989
G S K+
Sbjct: 508 VYAGPCSQKA 517
>pdb|2RIP|A Chain A, Structure Of Dppiv In Complex With An Inhibitor
Length = 729
Score = 32.0 bits (71), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 37/70 (52%), Gaps = 7/70 (10%)
Query: 923 GSKVLEDANAIDRMVRFLSSPSPKLQEKALDSVERIFRL---PEFKQKYGKSAQMPLVDL 979
G +VLED +A+D+M++ + PS KL L+ + +++ P F KS + PL+
Sbjct: 453 GLRVLEDNSALDKMLQNVQMPSKKLDFIILNETKFWYQMILPPHFD----KSKKYPLLLD 508
Query: 980 TQRGNSSMKS 989
G S K+
Sbjct: 509 VYAGPCSQKA 518
>pdb|1PFQ|A Chain A, Crystal Structure Of Human Apo Dipeptidyl Peptidase Iv /
Cd26
pdb|1PFQ|B Chain B, Crystal Structure Of Human Apo Dipeptidyl Peptidase Iv /
Cd26
Length = 731
Score = 32.0 bits (71), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 37/70 (52%), Gaps = 7/70 (10%)
Query: 923 GSKVLEDANAIDRMVRFLSSPSPKLQEKALDSVERIFRL---PEFKQKYGKSAQMPLVDL 979
G +VLED +A+D+M++ + PS KL L+ + +++ P F KS + PL+
Sbjct: 455 GLRVLEDNSALDKMLQNVQMPSKKLDFIILNETKFWYQMILPPHFD----KSKKYPLLLD 510
Query: 980 TQRGNSSMKS 989
G S K+
Sbjct: 511 VYAGPCSQKA 520
>pdb|1R9N|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv In
Complex With A Decapeptide (Tnpy) At 2.3 Ang. Resolution
pdb|1R9N|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase Iv In
Complex With A Decapeptide (Tnpy) At 2.3 Ang. Resolution
pdb|1R9N|C Chain C, Crystal Structure Of Human Dipeptidyl Peptidase Iv In
Complex With A Decapeptide (Tnpy) At 2.3 Ang. Resolution
pdb|1R9N|D Chain D, Crystal Structure Of Human Dipeptidyl Peptidase Iv In
Complex With A Decapeptide (Tnpy) At 2.3 Ang. Resolution
Length = 739
Score = 32.0 bits (71), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 37/70 (52%), Gaps = 7/70 (10%)
Query: 923 GSKVLEDANAIDRMVRFLSSPSPKLQEKALDSVERIFRL---PEFKQKYGKSAQMPLVDL 979
G +VLED +A+D+M++ + PS KL L+ + +++ P F KS + PL+
Sbjct: 463 GLRVLEDNSALDKMLQNVQMPSKKLDFIILNETKFWYQMILPPHFD----KSKKYPLLLD 518
Query: 980 TQRGNSSMKS 989
G S K+
Sbjct: 519 VYAGPCSQKA 528
>pdb|1J2E|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv
pdb|1J2E|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase Iv
pdb|1WCY|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv (dppiv)
Complex With Diprotin A
pdb|1WCY|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase Iv (dppiv)
Complex With Diprotin A
pdb|3VJM|A Chain A, Crystal Structure Of Human Depiptidyl Peptidase Iv (Dpp-4)
In Complex With A Prolylthiazolidine Inhibitor #1
pdb|3VJM|B Chain B, Crystal Structure Of Human Depiptidyl Peptidase Iv (Dpp-4)
In Complex With A Prolylthiazolidine Inhibitor #1
pdb|3VJK|A Chain A, Crystal Structure Of Human Depiptidyl Peptidase Iv (Dpp-4)
In Complex With Mp-513
pdb|3VJK|B Chain B, Crystal Structure Of Human Depiptidyl Peptidase Iv (Dpp-4)
In Complex With Mp-513
pdb|3VJL|A Chain A, Crystal Structure Of Human Depiptidyl Peptidase Iv (Dpp-4)
In Complex With A Prolylthiazolidine Inhibitor #2
pdb|3VJL|B Chain B, Crystal Structure Of Human Depiptidyl Peptidase Iv (Dpp-4)
In Complex With A Prolylthiazolidine Inhibitor #2
Length = 740
Score = 32.0 bits (71), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 37/70 (52%), Gaps = 7/70 (10%)
Query: 923 GSKVLEDANAIDRMVRFLSSPSPKLQEKALDSVERIFRL---PEFKQKYGKSAQMPLVDL 979
G +VLED +A+D+M++ + PS KL L+ + +++ P F KS + PL+
Sbjct: 458 GLRVLEDNSALDKMLQNVQMPSKKLDFIILNETKFWYQMILPPHFD----KSKKYPLLLD 513
Query: 980 TQRGNSSMKS 989
G S K+
Sbjct: 514 VYAGPCSQKA 523
>pdb|3NOX|A Chain A, Crystal Structure Of Human Dpp-Iv In Complex With
Sa-(+)-(6-
(Aminomethyl)-5-(2,4-Dichlorophenyl)-7-Methylimidazo[1,
2-A]pyrimidin- 2-Yl)(Morpholino)methanone
pdb|3NOX|B Chain B, Crystal Structure Of Human Dpp-Iv In Complex With
Sa-(+)-(6-
(Aminomethyl)-5-(2,4-Dichlorophenyl)-7-Methylimidazo[1,
2-A]pyrimidin- 2-Yl)(Morpholino)methanone
pdb|3SWW|A Chain A, Crystal Structure Of Human Dpp-Iv In Complex With
Sa-(+)-3-
(Aminomethyl)-4-(2,
4-Dichlorophenyl)-6-(2-Methoxyphenyl)- 2-Methyl-
5h-Pyrrolo[3,4-B]pyridin-7(6h)-One
pdb|3SWW|B Chain B, Crystal Structure Of Human Dpp-Iv In Complex With
Sa-(+)-3-
(Aminomethyl)-4-(2,
4-Dichlorophenyl)-6-(2-Methoxyphenyl)- 2-Methyl-
5h-Pyrrolo[3,4-B]pyridin-7(6h)-One
pdb|3SX4|A Chain A, Crystal Structure Of Human Dpp-Iv In Complex With
Sa-(+)-3-
(Aminomethyl)-4-(2,
4-Dichlorophenyl)-6-(2-Methoxyphenyl)- 2-Methyl-
5h-Pyrrolo[3,4-B]pyridin-7(6h)-One
pdb|3SX4|B Chain B, Crystal Structure Of Human Dpp-Iv In Complex With
Sa-(+)-3-
(Aminomethyl)-4-(2,
4-Dichlorophenyl)-6-(2-Methoxyphenyl)- 2-Methyl-
5h-Pyrrolo[3,4-B]pyridin-7(6h)-One
pdb|3Q0T|A Chain A, Crystal Structure Of Human Dpp-iv In Complex Withsa-(+)-
Methyl2-(3-
(aminomethyl)-4-(2,4-dichlorophenyl)-2-methyl-
7-oxo-5h-pyrrolo[3,4- B]pyridin-6(7h)-yl)acetate
pdb|3Q0T|B Chain B, Crystal Structure Of Human Dpp-iv In Complex Withsa-(+)-
Methyl2-(3-
(aminomethyl)-4-(2,4-dichlorophenyl)-2-methyl-
7-oxo-5h-pyrrolo[3,4- B]pyridin-6(7h)-yl)acetate
Length = 753
Score = 32.0 bits (71), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 37/70 (52%), Gaps = 7/70 (10%)
Query: 923 GSKVLEDANAIDRMVRFLSSPSPKLQEKALDSVERIFRL---PEFKQKYGKSAQMPLVDL 979
G +VLED +A+D+M++ + PS KL L+ + +++ P F KS + PL+
Sbjct: 454 GLRVLEDNSALDKMLQNVQMPSKKLDFIILNETKFWYQMILPPHFD----KSKKYPLLLD 509
Query: 980 TQRGNSSMKS 989
G S K+
Sbjct: 510 VYAGPCSQKA 519
>pdb|2KR4|A Chain A, U-Box Domain Of The E3 Ubiquitin Ligase E4b
Length = 85
Score = 32.0 bits (71), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Query: 266 FYCPITRDVMVDPVETSSGQTFERSAIEKWFSDGNNLCPLTMTVLDTSILRPNKTLRQSI 325
F P+ +M DPV SG +RS I + + P +L S+L P L++ I
Sbjct: 15 FRDPLMDTLMTDPVRLPSGTVMDRSIILRHLLNSPT-DPFNRQMLTESMLEPVPELKEQI 73
Query: 326 EEW 328
+ W
Sbjct: 74 QAW 76
>pdb|3Q8W|A Chain A, A B-Aminoacyl Containing Thiazolidine Derivative And Dppiv
Complex
pdb|3Q8W|B Chain B, A B-Aminoacyl Containing Thiazolidine Derivative And Dppiv
Complex
Length = 732
Score = 32.0 bits (71), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 37/70 (52%), Gaps = 7/70 (10%)
Query: 923 GSKVLEDANAIDRMVRFLSSPSPKLQEKALDSVERIFRL---PEFKQKYGKSAQMPLVDL 979
G +VLED +A+D+M++ + PS KL L+ + +++ P F KS + PL+
Sbjct: 452 GLRVLEDNSALDKMLQNVQMPSKKLDFIILNETKFWYQMILPPHFD----KSKKYPLLLD 507
Query: 980 TQRGNSSMKS 989
G S K+
Sbjct: 508 VYAGPCSQKA 517
>pdb|2G5P|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dppiv)
Complexed With Cyanopyrrolidine (C5-Pro-Pro) Inhibitor
21ac
pdb|2G5P|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dppiv)
Complexed With Cyanopyrrolidine (C5-Pro-Pro) Inhibitor
21ac
pdb|2G5T|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dppiv)
Complexed With Cyanopyrrolidine (C5-Pro-Pro) Inhibitor
21ag
pdb|2G5T|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dppiv)
Complexed With Cyanopyrrolidine (C5-Pro-Pro) Inhibitor
21ag
pdb|2G63|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dppiv)
Complexed With Cyanopyrrolidine (C5-Pro-Pro) Inhibitor
24b
pdb|2G63|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dppiv)
Complexed With Cyanopyrrolidine (C5-Pro-Pro) Inhibitor
24b
pdb|2G63|C Chain C, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dppiv)
Complexed With Cyanopyrrolidine (C5-Pro-Pro) Inhibitor
24b
pdb|2G63|D Chain D, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dppiv)
Complexed With Cyanopyrrolidine (C5-Pro-Pro) Inhibitor
24b
pdb|2I03|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase 4 (Dpp Iv)
With Potent Alkynyl Cyanopyrrolidine (Abt-279)
pdb|2I03|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase 4 (Dpp Iv)
With Potent Alkynyl Cyanopyrrolidine (Abt-279)
pdb|2I03|C Chain C, Crystal Structure Of Human Dipeptidyl Peptidase 4 (Dpp Iv)
With Potent Alkynyl Cyanopyrrolidine (Abt-279)
pdb|2I03|D Chain D, Crystal Structure Of Human Dipeptidyl Peptidase 4 (Dpp Iv)
With Potent Alkynyl Cyanopyrrolidine (Abt-279)
pdb|2OQV|A Chain A, Human Dipeptidyl Peptidase Iv (Dpp4) With Piperidine-
Constrained Phenethylamine
pdb|2OQV|B Chain B, Human Dipeptidyl Peptidase Iv (Dpp4) With Piperidine-
Constrained Phenethylamine
pdb|2I78|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dpp
Iv) Complexed With Abt-341, A Cyclohexene-Constrained
Phenethylamine Inhibitor
pdb|2I78|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dpp
Iv) Complexed With Abt-341, A Cyclohexene-Constrained
Phenethylamine Inhibitor
pdb|2I78|C Chain C, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dpp
Iv) Complexed With Abt-341, A Cyclohexene-Constrained
Phenethylamine Inhibitor
pdb|2I78|D Chain D, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dpp
Iv) Complexed With Abt-341, A Cyclohexene-Constrained
Phenethylamine Inhibitor
pdb|2OAG|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dppiv)
With Pyrrolidine-Constrained Phenethylamine 29g
pdb|2OAG|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dppiv)
With Pyrrolidine-Constrained Phenethylamine 29g
pdb|2OAG|C Chain C, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dppiv)
With Pyrrolidine-Constrained Phenethylamine 29g
pdb|2OAG|D Chain D, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dppiv)
With Pyrrolidine-Constrained Phenethylamine 29g
Length = 726
Score = 32.0 bits (71), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 37/70 (52%), Gaps = 7/70 (10%)
Query: 923 GSKVLEDANAIDRMVRFLSSPSPKLQEKALDSVERIFRL---PEFKQKYGKSAQMPLVDL 979
G +VLED +A+D+M++ + PS KL L+ + +++ P F KS + PL+
Sbjct: 452 GLRVLEDNSALDKMLQNVQMPSKKLDFIILNETKFWYQMILPPHFD----KSKKYPLLLD 507
Query: 980 TQRGNSSMKS 989
G S K+
Sbjct: 508 VYAGPCSQKA 517
>pdb|2JID|A Chain A, Human Dipeptidyl Peptidase Iv In Complex With 1-(3,4-
Dimethoxy-Phenyl)-3-M-Tolyl-Piperidine-4-Ylamine
pdb|2JID|B Chain B, Human Dipeptidyl Peptidase Iv In Complex With 1-(3,4-
Dimethoxy-Phenyl)-3-M-Tolyl-Piperidine-4-Ylamine
Length = 736
Score = 32.0 bits (71), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 37/70 (52%), Gaps = 7/70 (10%)
Query: 923 GSKVLEDANAIDRMVRFLSSPSPKLQEKALDSVERIFRL---PEFKQKYGKSAQMPLVDL 979
G +VLED +A+D+M++ + PS KL L+ + +++ P F KS + PL+
Sbjct: 460 GLRVLEDNSALDKMLQNVQMPSKKLDFIILNETKFWYQMILPPHFD----KSKKYPLLLD 515
Query: 980 TQRGNSSMKS 989
G S K+
Sbjct: 516 VYAGPCSQKA 525
>pdb|1XM9|A Chain A, Structure Of The Armadillo Repeat Domain Of Plakophilin 1
Length = 457
Score = 31.6 bits (70), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 49/100 (49%), Gaps = 3/100 (3%)
Query: 359 LQDLCQQRDQHREWVILENYIPKLIYLLGSKNRDVRNRALIILHILV--KDSNDTKERLA 416
+Q C Q + ++ V I KL+ LL S N++V+ A L LV +N + R
Sbjct: 26 IQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETRRQ 85
Query: 417 NGDDAVESIVRSLGRRIEERKLAVALLLELSTCNTLRDQI 456
NG S++R G E +K LL LS+ + L++++
Sbjct: 86 NGIREAVSLLRRTG-NAEIQKQLTGLLWNLSSTDELKEEL 124
>pdb|4A5S|A Chain A, Crystal Structure Of Human Dpp4 In Complex With A Noval
Heterocyclic Dpp4 Inhibitor
pdb|4A5S|B Chain B, Crystal Structure Of Human Dpp4 In Complex With A Noval
Heterocyclic Dpp4 Inhibitor
Length = 740
Score = 31.6 bits (70), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 37/70 (52%), Gaps = 7/70 (10%)
Query: 923 GSKVLEDANAIDRMVRFLSSPSPKLQEKALDSVERIFRL---PEFKQKYGKSAQMPLVDL 979
G +VLED +A+D+M++ + PS KL L+ + +++ P F KS + PL+
Sbjct: 452 GLRVLEDNSALDKMLQNVQMPSKKLDFIILNETKFWYQMILPPHFD----KSKKYPLLLD 507
Query: 980 TQRGNSSMKS 989
G S K+
Sbjct: 508 VYAGPCSQKA 517
>pdb|2QJR|A Chain A, Dipepdyl Peptidase Iv In Complex With Inhibitor Pzf
pdb|2QJR|B Chain B, Dipepdyl Peptidase Iv In Complex With Inhibitor Pzf
pdb|3F8S|A Chain A, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With Inhibitor
pdb|3F8S|B Chain B, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With Inhibitor
Length = 748
Score = 31.6 bits (70), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 37/70 (52%), Gaps = 7/70 (10%)
Query: 923 GSKVLEDANAIDRMVRFLSSPSPKLQEKALDSVERIFRL---PEFKQKYGKSAQMPLVDL 979
G +VLED +A+D+M++ + PS KL L+ + +++ P F KS + PL+
Sbjct: 460 GLRVLEDNSALDKMLQNVQMPSKKLDFIILNETKFWYQMILPPHFD----KSKKYPLLLD 515
Query: 980 TQRGNSSMKS 989
G S K+
Sbjct: 516 VYAGPCSQKA 525
>pdb|2BGR|A Chain A, Crystal Structure Of Hiv-1 Tat Derived Nonapeptides
Tat(1-9) Bound To The Active Site Of Dipeptidyl
Peptidase Iv (Cd26)
pdb|2BGR|B Chain B, Crystal Structure Of Hiv-1 Tat Derived Nonapeptides
Tat(1-9) Bound To The Active Site Of Dipeptidyl
Peptidase Iv (Cd26)
Length = 738
Score = 31.6 bits (70), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 37/70 (52%), Gaps = 7/70 (10%)
Query: 923 GSKVLEDANAIDRMVRFLSSPSPKLQEKALDSVERIFRL---PEFKQKYGKSAQMPLVDL 979
G +VLED +A+D+M++ + PS KL L+ + +++ P F KS + PL+
Sbjct: 462 GLRVLEDNSALDKMLQNVQMPSKKLDFIILNETKFWYQMILPPHFD----KSKKYPLLLD 517
Query: 980 TQRGNSSMKS 989
G S K+
Sbjct: 518 VYAGPCSQKA 527
>pdb|3CCB|A Chain A, Crystal Structure Of Human Dpp4 In Complex With A
Benzimidazole Derivative
pdb|3CCB|B Chain B, Crystal Structure Of Human Dpp4 In Complex With A
Benzimidazole Derivative
pdb|3CCB|C Chain C, Crystal Structure Of Human Dpp4 In Complex With A
Benzimidazole Derivative
pdb|3CCB|D Chain D, Crystal Structure Of Human Dpp4 In Complex With A
Benzimidazole Derivative
pdb|3CCC|A Chain A, Crystal Structure Of Human Dpp4 In Complex With A
Benzimidazole Derivative
pdb|3CCC|B Chain B, Crystal Structure Of Human Dpp4 In Complex With A
Benzimidazole Derivative
pdb|3CCC|C Chain C, Crystal Structure Of Human Dpp4 In Complex With A
Benzimidazole Derivative
pdb|3CCC|D Chain D, Crystal Structure Of Human Dpp4 In Complex With A
Benzimidazole Derivative
pdb|3G0B|A Chain A, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With Tak-322
pdb|3G0B|B Chain B, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With Tak-322
pdb|3G0B|C Chain C, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With Tak-322
pdb|3G0B|D Chain D, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With Tak-322
pdb|3G0C|A Chain A, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With A Pyrimidinedione Inhibitor 1
pdb|3G0C|B Chain B, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With A Pyrimidinedione Inhibitor 1
pdb|3G0C|C Chain C, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With A Pyrimidinedione Inhibitor 1
pdb|3G0C|D Chain D, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With A Pyrimidinedione Inhibitor 1
pdb|3G0D|A Chain A, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With A Pyrimidinedione Inhibitor 2
pdb|3G0D|B Chain B, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With A Pyrimidinedione Inhibitor 2
pdb|3G0D|C Chain C, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With A Pyrimidinedione Inhibitor 2
pdb|3G0D|D Chain D, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With A Pyrimidinedione Inhibitor 2
pdb|3G0G|A Chain A, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With A Pyrimidinone Inhibitor 3
pdb|3G0G|B Chain B, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With A Pyrimidinone Inhibitor 3
pdb|3G0G|C Chain C, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With A Pyrimidinone Inhibitor 3
pdb|3G0G|D Chain D, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With A Pyrimidinone Inhibitor 3
pdb|3O95|A Chain A, Crystal Structure Of Human Dpp4 Bound To Tak-100
pdb|3O95|B Chain B, Crystal Structure Of Human Dpp4 Bound To Tak-100
pdb|3O95|C Chain C, Crystal Structure Of Human Dpp4 Bound To Tak-100
pdb|3O95|D Chain D, Crystal Structure Of Human Dpp4 Bound To Tak-100
pdb|3O9V|A Chain A, Crystal Structure Of Human Dpp4 Bound To Tak-986
pdb|3O9V|B Chain B, Crystal Structure Of Human Dpp4 Bound To Tak-986
pdb|3O9V|C Chain C, Crystal Structure Of Human Dpp4 Bound To Tak-986
pdb|3O9V|D Chain D, Crystal Structure Of Human Dpp4 Bound To Tak-986
pdb|3OPM|A Chain A, Crystal Structure Of Human Dpp4 Bound To Tak-294
pdb|3OPM|B Chain B, Crystal Structure Of Human Dpp4 Bound To Tak-294
pdb|3OPM|C Chain C, Crystal Structure Of Human Dpp4 Bound To Tak-294
pdb|3OPM|D Chain D, Crystal Structure Of Human Dpp4 Bound To Tak-294
pdb|4G1F|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv In
Complex With A Pyridopyrimidinedione Analogue
pdb|4G1F|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase Iv In
Complex With A Pyridopyrimidinedione Analogue
pdb|4G1F|C Chain C, Crystal Structure Of Human Dipeptidyl Peptidase Iv In
Complex With A Pyridopyrimidinedione Analogue
pdb|4G1F|D Chain D, Crystal Structure Of Human Dipeptidyl Peptidase Iv In
Complex With A Pyridopyrimidinedione Analogue
Length = 740
Score = 31.6 bits (70), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 37/70 (52%), Gaps = 7/70 (10%)
Query: 923 GSKVLEDANAIDRMVRFLSSPSPKLQEKALDSVERIFRL---PEFKQKYGKSAQMPLVDL 979
G +VLED +A+D+M++ + PS KL L+ + +++ P F KS + PL+
Sbjct: 464 GLRVLEDNSALDKMLQNVQMPSKKLDFIILNETKFWYQMILPPHFD----KSKKYPLLLD 519
Query: 980 TQRGNSSMKS 989
G S K+
Sbjct: 520 VYAGPCSQKA 529
>pdb|1U8E|A Chain A, Human Dipeptidyl Peptidase IvCD26 MUTANT Y547F
pdb|1U8E|B Chain B, Human Dipeptidyl Peptidase IvCD26 MUTANT Y547F
Length = 728
Score = 31.6 bits (70), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 33/58 (56%), Gaps = 7/58 (12%)
Query: 923 GSKVLEDANAIDRMVRFLSSPSPKLQEKALDSVERIFRL---PEFKQKYGKSAQMPLV 977
G +VLED +A+D+M++ + PS KL L+ + +++ P F KS + PL+
Sbjct: 452 GLRVLEDNSALDKMLQNVQMPSKKLDFIILNETKFWYQMILPPHFD----KSKKYPLL 505
>pdb|2GBC|A Chain A, Native Dpp-Iv (Cd26) From Rat
pdb|2GBC|B Chain B, Native Dpp-Iv (Cd26) From Rat
pdb|2GBF|A Chain A, Rat Dpp-Iv With Alkynyl Cyanopyrrolidine #1
pdb|2GBF|B Chain B, Rat Dpp-Iv With Alkynyl Cyanopyrrolidine #1
pdb|2GBG|A Chain A, Rat Dpp-Iv With Alkynyl Cyanopyrrolidine #2
pdb|2GBG|B Chain B, Rat Dpp-Iv With Alkynyl Cyanopyrrolidine #2
pdb|2GBI|A Chain A, Rat Dpp-Iv With Xanthine Inhibitor 4
pdb|2GBI|B Chain B, Rat Dpp-Iv With Xanthine Inhibitor 4
pdb|2I3Z|A Chain A, Rat Dpp-iv With Xanthine Mimetic Inhibitor #7
pdb|2I3Z|B Chain B, Rat Dpp-iv With Xanthine Mimetic Inhibitor #7
pdb|2OAE|A Chain A, Crystal Structure Of Rat Dipeptidyl Peptidase (Dppiv) With
Thiazole-Based Peptide Mimetic #31
pdb|2OAE|B Chain B, Crystal Structure Of Rat Dipeptidyl Peptidase (Dppiv) With
Thiazole-Based Peptide Mimetic #31
pdb|4FFV|A Chain A, Crystal Structure Of Dipeptidyl Peptidase Iv (Dpp4,
Dpp-Iv, Cd26) In Complex With 11a19 Fab
pdb|4FFV|B Chain B, Crystal Structure Of Dipeptidyl Peptidase Iv (Dpp4,
Dpp-Iv, Cd26) In Complex With 11a19 Fab
pdb|4FFW|A Chain A, Crystal Structure Of Dipeptidyl Peptidase Iv (Dpp4,
Dpp-Iv, Cd26) In Complex With Fab + Sitagliptin
pdb|4FFW|B Chain B, Crystal Structure Of Dipeptidyl Peptidase Iv (Dpp4,
Dpp-Iv, Cd26) In Complex With Fab + Sitagliptin
Length = 730
Score = 31.2 bits (69), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 37/71 (52%), Gaps = 7/71 (9%)
Query: 925 KVLEDANAIDRMVRFLSSPSPKLQEKALDSVERIFRL---PEFKQKYGKSAQMPLVDLTQ 981
+VLED +A+D+M++ + PS KL L+ +++ P F KS + PL+
Sbjct: 456 RVLEDNSALDKMLQDVQMPSKKLDFIVLNETRFWYQMILPPHFD----KSKKYPLLIDVY 511
Query: 982 RGNSSMKSLSA 992
G S K+ +A
Sbjct: 512 AGPCSQKADAA 522
>pdb|2F42|A Chain A, Dimerization And U-Box Domains Of Zebrafish C-Terminal Of
Hsp70 Interacting Protein
Length = 179
Score = 31.2 bits (69), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 34/66 (51%)
Query: 270 ITRDVMVDPVETSSGQTFERSAIEKWFSDGNNLCPLTMTVLDTSILRPNKTLRQSIEEWK 329
I+ ++M +P T SG T++R IE+ + P+T + L L PN +++ I+ +
Sbjct: 111 ISFELMREPCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQDQLIPNLAMKEVIDAFI 170
Query: 330 DRNTMI 335
N +
Sbjct: 171 QENGWV 176
>pdb|3TJ3|A Chain A, Structure Of Importin A5 Bound To The N-Terminus Of Nup50
pdb|3TJ3|B Chain B, Structure Of Importin A5 Bound To The N-Terminus Of Nup50
Length = 447
Score = 30.4 bits (67), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 43/86 (50%), Gaps = 9/86 (10%)
Query: 883 LLEANAVRPLVRVLEDPDHGACEASLDALVTLI---EGERLQNGSKV------LEDANAI 933
L+E ++PL +L D + +L+ L ++ E E +NG+ + +E+A +
Sbjct: 354 LVELGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQEAKRNGTGINPYCALIEEAYGL 413
Query: 934 DRMVRFLSSPSPKLQEKALDSVERIF 959
D++ S + ++ +KA D +E F
Sbjct: 414 DKIEFLQSHENQEIYQKAFDLIEHYF 439
>pdb|2JDQ|A Chain A, C-Terminal Domain Of Influenza A Virus Polymerase Pb2
Subunit In Complex With Human Importin Alpha5
pdb|2JDQ|B Chain B, C-Terminal Domain Of Influenza A Virus Polymerase Pb2
Subunit In Complex With Human Importin Alpha5
Length = 450
Score = 30.4 bits (67), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 43/86 (50%), Gaps = 9/86 (10%)
Query: 883 LLEANAVRPLVRVLEDPDHGACEASLDALVTLI---EGERLQNGSKV------LEDANAI 933
L+E ++PL +L D + +L+ L ++ E E +NG+ + +E+A +
Sbjct: 357 LVELGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQEAKRNGTGINPYCALIEEAYGL 416
Query: 934 DRMVRFLSSPSPKLQEKALDSVERIF 959
D++ S + ++ +KA D +E F
Sbjct: 417 DKIEFLQSHENQEIYQKAFDLIEHYF 442
>pdb|1R4T|A Chain A, Solution Structure Of Exoenzyme S
Length = 153
Score = 30.0 bits (66), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 30/63 (47%), Gaps = 5/63 (7%)
Query: 414 RLANGDDAVESIVRSL-----GRRIEERKLAVALLLELSTCNTLRDQIGDVQGCILLLVT 468
RLA+GD A+ S+ +L G ++EE ++ LLE S Q G G LV
Sbjct: 45 RLASGDGALRSLSTALAGIRAGSQVEESRIQAGRLLERSIGGIALQQWGTTGGAASQLVL 104
Query: 469 MAS 471
AS
Sbjct: 105 DAS 107
>pdb|3CSK|A Chain A, Structure Of Dpp Iii From Saccharomyces Cerevisiae
Length = 711
Score = 29.6 bits (65), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 24/57 (42%), Gaps = 4/57 (7%)
Query: 483 ELLENL----SFSDDNVVQMAKANYFKHLLQRLSAGPESVKMRMATTLAEMELTDHH 535
+ L NL SF D + + +FK LL+ P S + ++ E T HH
Sbjct: 93 QFLSNLGNFKSFGDTKFIPRCEVKFFKQLLELAKINPSSSPLTLSPVDVNHEFTSHH 149
>pdb|1HE9|A Chain A, Crystal Structure Of The Gap Domain Of The Pseudomonas
Aeruginosa Exos Toxin
Length = 134
Score = 29.6 bits (65), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 30/63 (47%), Gaps = 5/63 (7%)
Query: 414 RLANGDDAVESIVRSL-----GRRIEERKLAVALLLELSTCNTLRDQIGDVQGCILLLVT 468
RLA+GD A+ S+ +L G ++EE ++ LLE S Q G G LV
Sbjct: 36 RLASGDGALRSLSTALAGIRAGSQVEESRIQAGRLLERSIGGIALQQWGTTGGAASQLVL 95
Query: 469 MAS 471
AS
Sbjct: 96 DAS 98
>pdb|3BCT|A Chain A, The Armadillo Repeat Region From Murine Beta-Catenin
Length = 470
Score = 29.6 bits (65), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 82/375 (21%), Positives = 148/375 (39%), Gaps = 55/375 (14%)
Query: 468 TMASSDDNQASRDAQELLENLSFSDDNVVQMAKANYFKHLLQRLSAGPESVKMRMATTLA 527
T +++D + +R L NLS + ++ + K+ L++ L + +SV TTL
Sbjct: 9 TXQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKXLGSPVDSVLFYAITTLH 68
Query: 528 EMELTDHHKASLLEGNVLGPL---LHLVSRGDIQMKKVAVKALRNLSSVPQNGLQMIKEG 584
+ L H + + + G L + L+++ +++ + L+ L+ Q ++I
Sbjct: 69 NLLL--HQEGAKXAVRLAGGLQKXVALLNKTNVKFLAITTDCLQILAYGNQES-KLIILA 125
Query: 585 AVGPLVDXXXXXXXXXXXXREETATAIMHLAVSTMYQESSQTPVTLLESDKEIFMLFSLI 644
+ GP T+ + L+V SS P + + L
Sbjct: 126 SGGPQALVNIXRTYTYEKLLWTTSRVLKVLSVC-----SSNKPAIVEAGGXQALGL---- 176
Query: 645 NLTGPNVQQRILQTFNALCRSPSAGNIKTTLTQCSAIPVLVQLCEHDNENVRANAVKLFC 704
+LT P+ QR++Q R+ S K + + LVQL D+ NV A +
Sbjct: 177 HLTDPS--QRLVQNCLWTLRNLSDAATKQEGXE-GLLGTLVQLLGSDDINVVTCAAGILS 233
Query: 705 CLVDD------------GDEAIIREHVGQKCLETLVTIIQSSHNEEEIASAMGILSKLPE 752
L + G EA++R T++++ E+ A+ L L
Sbjct: 234 NLTCNNYKNKXXVCQVGGIEALVR------------TVLRAGDREDITEPAICALRHLTS 281
Query: 753 VPQFTQWLLDA----GALPIVLNFLKNGRQNDPNRFQVVENAVGALRRFT-APTNLEWQK 807
Q + +A LP+V+ L + P+ + +++ VG +R P N
Sbjct: 282 RHQEAEXAQNAVRLHYGLPVVVKLL-----HPPSHWPLIKATVGLIRNLALCPAN---HA 333
Query: 808 RAAEAGVIPKLVQLL 822
E G IP+LVQLL
Sbjct: 334 PLREQGAIPRLVQLL 348
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.132 0.366
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,316,821
Number of Sequences: 62578
Number of extensions: 953425
Number of successful extensions: 3136
Number of sequences better than 100.0: 100
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 83
Number of HSP's that attempted gapping in prelim test: 2896
Number of HSP's gapped (non-prelim): 211
length of query: 1008
length of database: 14,973,337
effective HSP length: 108
effective length of query: 900
effective length of database: 8,214,913
effective search space: 7393421700
effective search space used: 7393421700
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)