Query 001833
Match_columns 1008
No_of_seqs 548 out of 3688
Neff 9.1
Searched_HMMs 46136
Date Fri Mar 29 10:23:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001833.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001833hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03200 cellulose synthase-in 100.0 7.4E-53 1.6E-57 527.0 62.2 620 337-1002 15-766 (2102)
2 PLN03200 cellulose synthase-in 100.0 2.8E-48 6.1E-53 486.1 60.2 616 337-1007 60-818 (2102)
3 KOG0166 Karyopherin (importin) 100.0 1.7E-39 3.6E-44 358.3 38.6 410 463-963 68-489 (514)
4 COG5064 SRP1 Karyopherin (impo 100.0 5.5E-40 1.2E-44 332.4 29.4 419 462-969 72-505 (526)
5 KOG4224 Armadillo repeat prote 100.0 1.1E-32 2.4E-37 281.9 24.5 399 378-843 86-494 (550)
6 KOG4224 Armadillo repeat prote 100.0 4.9E-31 1.1E-35 269.9 25.9 405 460-963 84-496 (550)
7 KOG0166 Karyopherin (importin) 100.0 2.4E-30 5.3E-35 285.9 33.2 399 545-997 68-483 (514)
8 COG5064 SRP1 Karyopherin (impo 100.0 4.9E-31 1.1E-35 267.6 25.3 402 544-997 72-493 (526)
9 PF05804 KAP: Kinesin-associat 99.9 2E-23 4.3E-28 244.7 45.3 500 348-915 135-648 (708)
10 PF05804 KAP: Kinesin-associat 99.9 1.2E-22 2.6E-27 238.2 39.6 395 424-844 254-651 (708)
11 KOG1048 Neural adherens juncti 99.8 8.1E-19 1.8E-23 200.4 29.4 386 379-817 235-700 (717)
12 PF04564 U-box: U-box domain; 99.8 1.6E-21 3.4E-26 163.3 5.0 71 263-333 2-72 (73)
13 KOG1048 Neural adherens juncti 99.8 8.9E-18 1.9E-22 192.0 25.7 420 463-972 235-696 (717)
14 KOG2122 Beta-catenin-binding p 99.8 6.9E-17 1.5E-21 190.2 23.1 374 433-844 208-603 (2195)
15 KOG4199 Uncharacterized conser 99.7 1.1E-15 2.5E-20 156.4 25.8 262 395-665 165-445 (461)
16 KOG1222 Kinesin associated pro 99.6 1.7E-13 3.8E-18 146.2 27.7 380 475-915 277-662 (791)
17 KOG4500 Rho/Rac GTPase guanine 99.6 1E-12 2.2E-17 139.1 32.4 446 337-841 89-570 (604)
18 KOG4199 Uncharacterized conser 99.6 3.7E-13 8E-18 138.2 27.6 330 500-915 102-443 (461)
19 smart00504 Ubox Modified RING 99.6 4.9E-16 1.1E-20 127.6 5.2 63 265-328 1-63 (63)
20 KOG4500 Rho/Rac GTPase guanine 99.6 1.5E-12 3.3E-17 137.8 30.6 459 435-944 58-555 (604)
21 KOG1222 Kinesin associated pro 99.6 3.9E-12 8.4E-17 136.1 31.1 384 435-845 279-666 (791)
22 KOG1293 Proteins containing ar 99.6 1.5E-12 3.2E-17 145.6 27.8 485 470-999 18-532 (678)
23 KOG2122 Beta-catenin-binding p 99.5 3E-13 6.4E-18 160.2 22.0 372 547-963 201-604 (2195)
24 PF10508 Proteasom_PSMB: Prote 99.5 1.5E-10 3.2E-15 135.9 44.8 399 380-797 41-463 (503)
25 PF10508 Proteasom_PSMB: Prote 99.5 3.1E-11 6.7E-16 141.6 34.9 404 466-960 43-462 (503)
26 PF01602 Adaptin_N: Adaptin N 99.5 7.2E-11 1.6E-15 141.9 37.0 495 348-956 19-520 (526)
27 KOG2171 Karyopherin (importin) 99.5 2.9E-10 6.4E-15 135.4 40.2 545 380-1001 7-595 (1075)
28 KOG2171 Karyopherin (importin) 99.5 8.3E-10 1.8E-14 131.7 43.4 465 338-842 7-504 (1075)
29 KOG1293 Proteins containing ar 99.4 6.9E-11 1.5E-15 132.5 29.1 486 342-915 16-532 (678)
30 PRK09687 putative lyase; Provi 99.4 2.7E-11 5.8E-16 130.4 24.1 255 503-839 24-279 (280)
31 PF04826 Arm_2: Armadillo-like 99.4 1.6E-11 3.5E-16 128.9 19.9 195 415-617 8-206 (254)
32 PRK13800 putative oxidoreducta 99.4 8.6E-11 1.9E-15 147.8 28.3 278 500-913 619-896 (897)
33 PRK09687 putative lyase; Provi 99.4 7.8E-11 1.7E-15 126.9 23.2 255 462-796 24-279 (280)
34 KOG4642 Chaperone-dependent E3 99.4 1.2E-11 2.6E-16 122.1 14.2 218 70-333 47-279 (284)
35 PRK13800 putative oxidoreducta 99.3 2.4E-10 5.2E-15 143.8 28.6 278 582-997 619-896 (897)
36 PF04826 Arm_2: Armadillo-like 99.3 2.9E-10 6.2E-15 119.6 22.7 240 632-907 9-253 (254)
37 KOG2023 Nuclear transport rece 99.3 2.4E-10 5.2E-15 127.3 20.6 467 420-958 10-547 (885)
38 PF01602 Adaptin_N: Adaptin N 99.3 1.7E-09 3.6E-14 130.1 28.3 397 461-960 42-444 (526)
39 KOG0168 Putative ubiquitin fus 99.2 3.6E-09 7.9E-14 121.1 27.1 380 515-941 181-653 (1051)
40 PTZ00429 beta-adaptin; Provisi 99.2 1.6E-06 3.4E-11 104.8 48.5 506 376-999 31-545 (746)
41 KOG2023 Nuclear transport rece 99.2 2E-08 4.4E-13 112.3 28.7 519 336-958 129-773 (885)
42 PTZ00429 beta-adaptin; Provisi 99.1 5.4E-07 1.2E-11 108.7 42.3 497 338-955 35-541 (746)
43 cd00256 VATPase_H VATPase_H, r 99.0 5.8E-08 1.2E-12 108.7 26.0 354 585-960 54-425 (429)
44 cd00020 ARM Armadillo/beta-cat 99.0 5.1E-09 1.1E-13 98.4 14.0 117 497-616 2-120 (120)
45 KOG0168 Putative ubiquitin fus 99.0 1.7E-07 3.7E-12 107.8 26.5 345 460-823 210-653 (1051)
46 cd00256 VATPase_H VATPase_H, r 99.0 5.1E-07 1.1E-11 101.2 28.8 348 461-841 53-424 (429)
47 cd00020 ARM Armadillo/beta-cat 98.9 1.1E-08 2.3E-13 96.2 13.3 116 718-841 3-119 (120)
48 KOG0946 ER-Golgi vesicle-tethe 98.9 2.5E-05 5.4E-10 90.0 40.5 459 349-839 37-555 (970)
49 PF15227 zf-C3HC4_4: zinc fing 98.8 3.6E-09 7.7E-14 77.5 3.0 39 268-306 1-42 (42)
50 KOG1241 Karyopherin (importin) 98.8 1.2E-05 2.6E-10 92.3 32.2 537 382-982 95-691 (859)
51 KOG1241 Karyopherin (importin) 98.8 3.5E-06 7.6E-11 96.6 27.5 428 421-915 3-476 (859)
52 KOG2759 Vacuolar H+-ATPase V1 98.8 1.2E-06 2.7E-11 94.3 22.5 304 637-960 116-438 (442)
53 PLN03208 E3 ubiquitin-protein 98.7 7.3E-09 1.6E-13 101.0 3.8 59 262-320 15-88 (193)
54 KOG0946 ER-Golgi vesicle-tethe 98.7 1.6E-05 3.4E-10 91.6 29.5 298 543-846 22-350 (970)
55 KOG0213 Splicing factor 3b, su 98.7 1.1E-05 2.4E-10 91.8 27.9 483 386-958 562-1063(1172)
56 PF11789 zf-Nse: Zinc-finger o 98.7 6.5E-09 1.4E-13 81.3 1.7 44 264-307 10-55 (57)
57 TIGR00599 rad18 DNA repair pro 98.6 3.4E-08 7.4E-13 108.8 5.8 70 263-333 24-93 (397)
58 KOG2759 Vacuolar H+-ATPase V1 98.6 8.1E-06 1.7E-10 88.2 21.6 323 463-799 67-438 (442)
59 KOG1824 TATA-binding protein-i 98.5 0.0054 1.2E-07 72.7 47.1 494 378-960 477-1036(1233)
60 COG5215 KAP95 Karyopherin (imp 98.5 0.00067 1.5E-08 75.7 35.3 463 349-841 192-710 (858)
61 KOG1059 Vesicle coat complex A 98.5 0.00046 1E-08 79.1 34.8 212 464-707 147-364 (877)
62 PF03224 V-ATPase_H_N: V-ATPas 98.5 5.1E-06 1.1E-10 92.0 19.1 227 378-606 56-304 (312)
63 KOG1060 Vesicle coat complex A 98.5 7.4E-05 1.6E-09 86.2 27.9 356 505-959 111-495 (968)
64 PF05536 Neurochondrin: Neuroc 98.5 9.1E-05 2E-09 87.4 29.8 367 461-841 5-438 (543)
65 KOG1824 TATA-binding protein-i 98.5 0.00035 7.6E-09 82.2 33.3 418 381-846 572-1040(1233)
66 KOG2160 Armadillo/beta-catenin 98.5 7.1E-06 1.5E-10 87.7 17.6 186 472-664 94-282 (342)
67 PF03224 V-ATPase_H_N: V-ATPas 98.4 2.2E-06 4.8E-11 94.9 14.0 229 462-699 56-305 (312)
68 KOG1062 Vesicle coat complex A 98.4 0.0019 4E-08 75.5 37.2 441 420-954 103-575 (866)
69 TIGR02270 conserved hypothetic 98.4 3.7E-05 8E-10 87.0 23.6 243 460-799 53-296 (410)
70 KOG0213 Splicing factor 3b, su 98.4 0.00015 3.2E-09 82.9 27.6 446 462-1001 595-1066(1172)
71 KOG4413 26S proteasome regulat 98.4 0.00051 1.1E-08 71.6 28.9 359 286-707 61-438 (524)
72 KOG2973 Uncharacterized conser 98.3 0.00017 3.8E-09 74.9 23.7 295 380-707 6-314 (353)
73 TIGR02270 conserved hypothetic 98.3 8.8E-05 1.9E-09 84.0 23.4 242 501-841 53-295 (410)
74 KOG2160 Armadillo/beta-catenin 98.3 2.5E-05 5.4E-10 83.6 17.6 186 647-841 95-281 (342)
75 PF13445 zf-RING_UBOX: RING-ty 98.3 3E-07 6.5E-12 67.2 2.1 36 268-304 1-43 (43)
76 KOG4413 26S proteasome regulat 98.3 0.001 2.2E-08 69.4 27.7 356 464-840 85-482 (524)
77 COG5215 KAP95 Karyopherin (imp 98.3 0.013 2.8E-07 65.9 37.7 534 382-983 99-692 (858)
78 PF13923 zf-C3HC4_2: Zinc fing 98.3 5.1E-07 1.1E-11 65.5 2.7 38 268-306 1-39 (39)
79 KOG1789 Endocytosis protein RM 98.3 0.001 2.3E-08 78.6 30.5 385 436-840 1742-2164(2235)
80 PF05536 Neurochondrin: Neuroc 98.3 0.0028 6E-08 75.0 35.0 433 379-846 7-497 (543)
81 KOG1789 Endocytosis protein RM 98.2 0.00037 7.9E-09 82.3 24.4 364 350-734 1740-2142(2235)
82 KOG3678 SARM protein (with ste 98.2 4.6E-05 1E-09 82.5 16.0 270 672-956 173-448 (832)
83 KOG2973 Uncharacterized conser 98.1 0.00027 5.8E-09 73.6 20.1 281 505-841 6-314 (353)
84 PF14664 RICTOR_N: Rapamycin-i 98.1 0.0014 3.1E-08 73.5 27.6 330 357-707 5-363 (371)
85 KOG1062 Vesicle coat complex A 98.1 0.0012 2.7E-08 76.9 27.1 402 339-842 111-544 (866)
86 KOG1242 Protein containing ada 98.1 0.00043 9.4E-09 79.0 23.0 335 587-999 99-443 (569)
87 COG5113 UFD2 Ubiquitin fusion 98.1 8.7E-05 1.9E-09 83.1 16.9 72 260-332 849-921 (929)
88 KOG0212 Uncharacterized conser 98.0 0.0015 3.3E-08 73.2 24.9 353 375-752 82-444 (675)
89 KOG1061 Vesicle coat complex A 98.0 0.0035 7.6E-08 73.4 28.3 365 434-846 28-419 (734)
90 KOG1242 Protein containing ada 98.0 0.0014 2.9E-08 75.1 24.3 343 461-842 96-444 (569)
91 PF00097 zf-C3HC4: Zinc finger 98.0 4.4E-06 9.6E-11 61.5 3.0 39 268-306 1-41 (41)
92 KOG1060 Vesicle coat complex A 98.0 0.013 2.9E-07 68.3 32.0 327 464-845 111-461 (968)
93 PF14835 zf-RING_6: zf-RING of 98.0 2.6E-06 5.7E-11 66.4 1.4 58 265-325 7-65 (65)
94 KOG0211 Protein phosphatase 2A 98.0 0.0048 1E-07 74.4 29.2 542 378-1004 122-668 (759)
95 COG5181 HSH155 U2 snRNP splice 98.0 0.00083 1.8E-08 75.6 20.9 259 635-958 604-868 (975)
96 KOG0211 Protein phosphatase 2A 97.9 0.0024 5.2E-08 76.9 26.2 533 379-1001 84-626 (759)
97 KOG2042 Ubiquitin fusion degra 97.9 8.5E-06 1.8E-10 97.6 5.6 71 261-332 866-937 (943)
98 KOG0287 Postreplication repair 97.9 4.4E-06 9.6E-11 86.2 2.6 67 264-331 22-88 (442)
99 COG1413 FOG: HEAT repeat [Ener 97.9 0.0043 9.2E-08 69.9 26.7 279 461-838 43-331 (335)
100 KOG0823 Predicted E3 ubiquitin 97.9 6E-06 1.3E-10 82.2 2.9 58 263-320 45-104 (230)
101 COG1413 FOG: HEAT repeat [Ener 97.9 0.0019 4.1E-08 72.7 23.0 193 635-915 43-241 (335)
102 KOG1943 Beta-tubulin folding c 97.9 0.0086 1.9E-07 72.4 28.2 496 377-961 341-882 (1133)
103 KOG0212 Uncharacterized conser 97.8 0.0032 6.9E-08 70.7 22.7 355 541-958 82-442 (675)
104 KOG3678 SARM protein (with ste 97.8 0.00099 2.1E-08 72.5 18.2 268 414-707 175-451 (832)
105 PF14664 RICTOR_N: Rapamycin-i 97.8 0.0077 1.7E-07 67.7 25.7 253 403-666 9-271 (371)
106 COG5240 SEC21 Vesicle coat com 97.8 0.02 4.3E-07 64.4 27.9 454 462-1000 66-555 (898)
107 PF13920 zf-C3HC4_3: Zinc fing 97.8 1.8E-05 3.9E-10 61.0 3.1 47 264-311 1-48 (50)
108 PHA02929 N1R/p28-like protein; 97.8 2E-05 4.3E-10 81.1 4.1 47 264-311 173-227 (238)
109 KOG4646 Uncharacterized conser 97.7 0.0004 8.8E-09 63.2 11.3 131 460-594 15-147 (173)
110 COG5432 RAD18 RING-finger-cont 97.7 2.1E-05 4.5E-10 79.6 2.9 65 265-330 25-89 (391)
111 PRK14707 hypothetical protein; 97.7 0.43 9.4E-06 62.1 42.9 577 352-996 181-777 (2710)
112 COG5181 HSH155 U2 snRNP splice 97.7 0.0036 7.7E-08 70.7 20.1 254 679-1001 604-871 (975)
113 KOG4646 Uncharacterized conser 97.7 0.0004 8.6E-09 63.3 10.2 125 420-545 16-143 (173)
114 PF00514 Arm: Armadillo/beta-c 97.7 7E-05 1.5E-09 55.0 4.6 40 802-841 1-40 (41)
115 PF00514 Arm: Armadillo/beta-c 97.6 0.00011 2.4E-09 53.9 5.1 41 532-572 1-41 (41)
116 KOG2177 Predicted E3 ubiquitin 97.6 4.3E-05 9.4E-10 86.3 4.0 68 264-334 12-79 (386)
117 cd00162 RING RING-finger (Real 97.6 6.6E-05 1.4E-09 56.3 3.6 43 267-309 1-44 (45)
118 KOG1059 Vesicle coat complex A 97.6 0.0032 6.9E-08 72.5 18.2 224 680-966 145-371 (877)
119 COG5240 SEC21 Vesicle coat com 97.6 0.18 3.9E-06 57.1 30.7 439 381-915 69-554 (898)
120 KOG0320 Predicted E3 ubiquitin 97.6 5.9E-05 1.3E-09 71.6 3.5 55 262-317 128-184 (187)
121 KOG1077 Vesicle coat complex A 97.5 0.13 2.8E-06 59.6 29.4 367 379-797 113-507 (938)
122 PF13639 zf-RING_2: Ring finge 97.5 5.2E-05 1.1E-09 56.7 1.9 40 267-307 2-44 (44)
123 KOG0317 Predicted E3 ubiquitin 97.5 8.1E-05 1.8E-09 76.5 3.8 56 260-316 234-289 (293)
124 PRK14707 hypothetical protein; 97.5 0.79 1.7E-05 59.8 40.9 585 348-995 345-944 (2710)
125 PF10165 Ric8: Guanine nucleot 97.5 0.021 4.5E-07 66.3 23.6 265 440-707 2-336 (446)
126 PF05659 RPW8: Arabidopsis bro 97.5 0.0014 3E-08 62.9 11.5 110 12-129 12-122 (147)
127 smart00184 RING Ring finger. E 97.4 0.00013 2.8E-09 52.7 3.3 39 268-306 1-39 (39)
128 KOG2734 Uncharacterized conser 97.4 0.023 5E-07 62.2 21.3 242 479-732 102-371 (536)
129 KOG1077 Vesicle coat complex A 97.3 0.079 1.7E-06 61.3 25.3 345 547-967 115-495 (938)
130 KOG1061 Vesicle coat complex A 97.3 0.012 2.6E-07 69.1 19.4 409 377-842 13-453 (734)
131 KOG0567 HEAT repeat-containing 97.3 0.037 8E-07 57.0 20.5 199 496-748 61-276 (289)
132 KOG2734 Uncharacterized conser 97.3 0.034 7.4E-07 61.0 21.2 242 372-616 120-400 (536)
133 COG5231 VMA13 Vacuolar H+-ATPa 97.2 0.012 2.7E-07 61.6 16.2 259 686-959 156-427 (432)
134 COG5369 Uncharacterized conser 97.2 0.0017 3.7E-08 72.2 10.4 289 535-841 423-740 (743)
135 KOG2259 Uncharacterized conser 97.1 0.0026 5.5E-08 72.6 11.0 253 640-958 203-473 (823)
136 KOG2259 Uncharacterized conser 97.1 0.0033 7.1E-08 71.8 11.8 244 601-914 212-473 (823)
137 PF13646 HEAT_2: HEAT repeats; 97.1 0.0016 3.4E-08 57.1 7.7 86 463-568 1-88 (88)
138 PHA02926 zinc finger-like prot 97.1 0.00032 7E-09 69.4 3.4 50 262-311 167-230 (242)
139 KOG1058 Vesicle coat complex C 97.1 0.041 8.8E-07 64.1 20.5 353 511-963 108-466 (948)
140 PF13646 HEAT_2: HEAT repeats; 97.1 0.0011 2.4E-08 58.1 6.6 87 637-748 1-88 (88)
141 KOG0978 E3 ubiquitin ligase in 97.1 0.027 5.8E-07 66.5 19.0 54 264-317 642-695 (698)
142 KOG4535 HEAT and armadillo rep 97.1 0.023 5E-07 62.7 16.8 441 512-1006 117-609 (728)
143 KOG0311 Predicted E3 ubiquitin 97.0 0.00016 3.5E-09 76.1 0.3 65 264-328 42-108 (381)
144 TIGR00570 cdk7 CDK-activating 97.0 0.00064 1.4E-08 72.1 4.5 53 264-316 2-59 (309)
145 COG5369 Uncharacterized conser 97.0 0.0025 5.5E-08 70.9 8.9 181 740-958 406-592 (743)
146 KOG1517 Guanine nucleotide bin 97.0 0.0097 2.1E-07 71.3 13.8 233 723-999 473-731 (1387)
147 KOG1078 Vesicle coat complex C 97.0 1.3 2.7E-05 52.7 30.3 285 544-915 246-531 (865)
148 COG5574 PEX10 RING-finger-cont 96.9 0.00052 1.1E-08 69.8 2.8 56 259-314 209-265 (271)
149 KOG0915 Uncharacterized conser 96.9 0.58 1.3E-05 59.3 28.8 300 504-843 1000-1307(1702)
150 PF13513 HEAT_EZ: HEAT-like re 96.9 0.002 4.3E-08 50.8 5.4 55 784-840 1-55 (55)
151 PF10165 Ric8: Guanine nucleot 96.9 0.05 1.1E-06 63.1 18.9 172 356-529 2-216 (446)
152 KOG4535 HEAT and armadillo rep 96.9 0.044 9.4E-07 60.6 16.7 272 552-841 304-602 (728)
153 PF14634 zf-RING_5: zinc-RING 96.8 0.001 2.2E-08 49.6 2.9 41 267-308 1-44 (44)
154 KOG1517 Guanine nucleotide bin 96.8 0.031 6.8E-07 67.2 16.2 238 586-843 474-733 (1387)
155 COG5231 VMA13 Vacuolar H+-ATPa 96.7 0.067 1.5E-06 56.3 16.2 237 550-799 156-428 (432)
156 KOG0567 HEAT repeat-containing 96.7 0.35 7.5E-06 50.1 21.0 227 503-796 37-277 (289)
157 KOG0289 mRNA splicing factor [ 96.7 0.0031 6.7E-08 68.3 6.3 51 266-317 1-52 (506)
158 KOG1058 Vesicle coat complex C 96.6 0.97 2.1E-05 53.3 25.7 342 470-915 108-462 (948)
159 KOG1078 Vesicle coat complex C 96.5 2.2 4.7E-05 50.8 28.3 252 724-999 247-531 (865)
160 KOG0297 TNF receptor-associate 96.5 0.0017 3.6E-08 73.6 3.4 66 262-328 18-85 (391)
161 smart00185 ARM Armadillo/beta- 96.5 0.0056 1.2E-07 44.7 5.0 39 803-841 2-40 (41)
162 smart00185 ARM Armadillo/beta- 96.5 0.0059 1.3E-07 44.5 5.1 39 533-571 2-40 (41)
163 KOG1240 Protein kinase contain 96.4 0.11 2.3E-06 63.9 17.8 255 648-961 436-726 (1431)
164 KOG1991 Nuclear transport rece 96.4 3.8 8.2E-05 50.2 33.3 414 430-915 15-531 (1010)
165 KOG1240 Protein kinase contain 96.4 0.15 3.2E-06 62.7 18.4 144 639-800 582-726 (1431)
166 PF12460 MMS19_C: RNAPII trans 96.3 2.3 5E-05 49.2 27.6 358 545-962 1-396 (415)
167 PF12348 CLASP_N: CLASP N term 96.3 0.031 6.7E-07 59.0 11.3 180 782-1001 19-207 (228)
168 KOG0414 Chromosome condensatio 96.3 4 8.7E-05 51.0 29.5 142 765-959 920-1063(1251)
169 PF04078 Rcd1: Cell differenti 96.2 0.21 4.6E-06 52.1 16.4 238 692-999 8-261 (262)
170 PF12348 CLASP_N: CLASP N term 96.2 0.074 1.6E-06 56.1 13.8 109 460-572 93-206 (228)
171 KOG0915 Uncharacterized conser 96.2 0.85 1.8E-05 57.9 23.7 321 516-915 971-1305(1702)
172 PF12678 zf-rbx1: RING-H2 zinc 96.1 0.0045 9.7E-08 51.8 2.9 39 268-307 22-73 (73)
173 KOG2164 Predicted E3 ubiquitin 96.1 0.0037 8.1E-08 69.7 3.2 55 265-319 186-244 (513)
174 KOG1943 Beta-tubulin folding c 96.1 5.6 0.00012 49.3 33.0 153 679-841 341-499 (1133)
175 COG5222 Uncharacterized conser 96.0 0.0066 1.4E-07 62.1 4.3 65 266-330 275-341 (427)
176 PF13513 HEAT_EZ: HEAT-like re 96.0 0.011 2.4E-07 46.5 4.7 55 516-570 1-55 (55)
177 PF12460 MMS19_C: RNAPII trans 96.0 2.5 5.4E-05 48.9 25.8 340 505-915 2-393 (415)
178 PF09759 Atx10homo_assoc: Spin 95.8 0.031 6.8E-07 49.6 6.9 69 740-813 3-72 (102)
179 PF04078 Rcd1: Cell differenti 95.8 1.1 2.3E-05 47.0 19.0 143 433-575 9-171 (262)
180 PF05004 IFRD: Interferon-rela 95.7 0.79 1.7E-05 50.4 19.0 192 507-707 48-256 (309)
181 KOG3036 Protein involved in ce 95.6 0.21 4.6E-06 50.9 12.6 107 739-846 95-201 (293)
182 COG5096 Vesicle coat complex, 95.5 8.4 0.00018 46.9 28.8 102 463-572 94-195 (757)
183 COG5096 Vesicle coat complex, 95.4 5.2 0.00011 48.6 25.7 138 465-617 59-196 (757)
184 PF12755 Vac14_Fab1_bd: Vacuol 95.4 0.049 1.1E-06 48.4 6.7 70 886-960 26-96 (97)
185 KOG2274 Predicted importin 9 [ 95.3 3 6.5E-05 50.4 22.7 327 471-822 460-806 (1005)
186 KOG3036 Protein involved in ce 95.1 2.5 5.3E-05 43.5 18.4 99 477-575 95-200 (293)
187 PF11841 DUF3361: Domain of un 95.1 0.32 6.9E-06 47.0 11.8 128 674-809 6-141 (160)
188 PF12717 Cnd1: non-SMC mitotic 95.1 0.4 8.7E-06 48.2 13.4 90 784-915 2-91 (178)
189 PF11841 DUF3361: Domain of un 95.1 0.23 4.9E-06 48.0 10.7 122 538-666 6-133 (160)
190 PF05004 IFRD: Interferon-rela 95.1 0.7 1.5E-05 50.9 16.1 201 637-842 45-257 (309)
191 PF09759 Atx10homo_assoc: Spin 95.1 0.087 1.9E-06 46.9 7.2 63 651-716 2-66 (102)
192 KOG4159 Predicted E3 ubiquitin 95.1 0.016 3.6E-07 64.6 3.3 68 262-330 81-153 (398)
193 PF08569 Mo25: Mo25-like; Int 95.0 0.44 9.4E-06 52.8 14.3 228 675-940 72-306 (335)
194 KOG2660 Locus-specific chromos 95.0 0.011 2.4E-07 62.4 1.8 63 264-327 14-81 (331)
195 PF11698 V-ATPase_H_C: V-ATPas 95.0 0.058 1.3E-06 49.3 6.0 71 887-959 43-114 (119)
196 PF06025 DUF913: Domain of Unk 94.6 2.1 4.5E-05 48.5 18.7 123 652-775 77-207 (379)
197 KOG3039 Uncharacterized conser 94.6 0.022 4.7E-07 57.1 2.4 31 267-297 45-75 (303)
198 KOG4151 Myosin assembly protei 94.6 0.5 1.1E-05 56.3 13.8 245 571-841 491-740 (748)
199 PF12861 zf-Apc11: Anaphase-pr 94.4 0.043 9.4E-07 46.4 3.5 47 265-311 32-82 (85)
200 KOG1002 Nucleotide excision re 94.4 0.054 1.2E-06 60.1 5.2 51 263-313 534-588 (791)
201 KOG4151 Myosin assembly protei 94.4 0.35 7.6E-06 57.5 12.1 202 669-915 494-698 (748)
202 KOG2979 Protein involved in DN 94.4 0.034 7.3E-07 56.8 3.3 46 264-309 175-222 (262)
203 KOG0414 Chromosome condensatio 94.3 21 0.00045 45.0 29.8 133 723-908 920-1056(1251)
204 KOG1813 Predicted E3 ubiquitin 94.2 0.02 4.3E-07 59.4 1.4 45 266-311 242-286 (313)
205 KOG4628 Predicted E3 ubiquitin 94.2 0.031 6.6E-07 60.7 2.8 47 266-312 230-279 (348)
206 KOG1020 Sister chromatid cohes 94.1 25 0.00055 45.5 34.6 146 460-619 815-963 (1692)
207 PF04641 Rtf2: Rtf2 RING-finge 94.1 0.038 8.2E-07 59.2 3.2 52 264-317 112-167 (260)
208 KOG1991 Nuclear transport rece 93.9 22 0.00047 44.0 29.1 321 460-842 409-757 (1010)
209 PF13764 E3_UbLigase_R4: E3 ub 93.9 10 0.00022 47.0 23.4 238 539-819 113-382 (802)
210 PF08569 Mo25: Mo25-like; Int 93.8 9.2 0.0002 42.5 21.2 221 460-689 75-307 (335)
211 KOG3039 Uncharacterized conser 93.8 0.049 1.1E-06 54.7 3.0 53 264-317 220-276 (303)
212 KOG0802 E3 ubiquitin ligase [P 93.8 0.031 6.7E-07 66.7 2.0 46 264-310 290-340 (543)
213 KOG1248 Uncharacterized conser 93.5 24 0.00051 44.6 25.3 225 689-959 664-897 (1176)
214 KOG1967 DNA repair/transcripti 93.3 1.2 2.7E-05 53.7 13.9 153 635-797 867-1022(1030)
215 KOG0824 Predicted E3 ubiquitin 93.1 0.05 1.1E-06 56.7 2.0 51 265-315 7-57 (324)
216 KOG1248 Uncharacterized conser 93.1 32 0.00069 43.5 25.5 218 472-708 665-898 (1176)
217 PF08045 CDC14: Cell division 93.0 0.72 1.6E-05 48.5 10.4 83 349-432 105-188 (257)
218 PF13764 E3_UbLigase_R4: E3 ub 93.0 9.1 0.0002 47.4 21.1 70 460-529 116-198 (802)
219 PF04063 DUF383: Domain of unk 92.9 0.85 1.8E-05 46.1 10.4 120 475-594 9-157 (192)
220 KOG2062 26S proteasome regulat 92.6 8 0.00017 46.0 18.7 265 501-827 412-679 (929)
221 PF02985 HEAT: HEAT repeat; I 92.4 0.16 3.4E-06 34.5 3.1 29 814-842 1-29 (31)
222 KOG4367 Predicted Zn-finger pr 92.2 0.054 1.2E-06 58.5 0.9 33 264-296 3-35 (699)
223 KOG0826 Predicted E3 ubiquitin 92.2 0.096 2.1E-06 55.2 2.7 50 262-312 297-347 (357)
224 PF12717 Cnd1: non-SMC mitotic 92.2 5.6 0.00012 40.0 15.4 91 556-665 1-93 (178)
225 COG5152 Uncharacterized conser 92.0 0.066 1.4E-06 51.8 1.1 45 266-311 197-241 (259)
226 PF12755 Vac14_Fab1_bd: Vacuol 91.9 0.66 1.4E-05 41.2 7.2 70 500-570 25-94 (97)
227 KOG1967 DNA repair/transcripti 91.8 1.3 2.8E-05 53.6 11.4 260 559-838 749-1020(1030)
228 KOG0883 Cyclophilin type, U bo 91.4 0.13 2.8E-06 55.2 2.5 52 265-317 40-91 (518)
229 PF11698 V-ATPase_H_C: V-ATPas 91.3 0.38 8.2E-06 44.0 5.2 72 765-842 44-115 (119)
230 KOG1832 HIV-1 Vpr-binding prot 91.3 9.7 0.00021 46.0 17.5 359 436-815 370-787 (1516)
231 KOG2611 Neurochondrin/leucine- 91.1 14 0.0003 41.8 17.6 226 466-707 16-273 (698)
232 PF05918 API5: Apoptosis inhib 91.0 33 0.0007 40.7 21.7 23 648-670 281-303 (556)
233 KOG2025 Chromosome condensatio 90.8 7.9 0.00017 45.8 16.1 106 635-749 85-190 (892)
234 KOG2999 Regulator of Rac1, req 90.8 10 0.00022 43.5 16.5 167 545-720 85-254 (713)
235 KOG3113 Uncharacterized conser 90.5 0.19 4.1E-06 50.9 2.7 51 264-317 110-164 (293)
236 KOG4653 Uncharacterized conser 90.5 5.4 0.00012 48.2 14.7 227 588-841 728-963 (982)
237 KOG2062 26S proteasome regulat 90.3 12 0.00027 44.4 17.2 137 677-843 517-654 (929)
238 KOG1788 Uncharacterized conser 90.3 14 0.0003 45.5 17.6 252 357-616 664-982 (2799)
239 PF12719 Cnd3: Nuclear condens 90.3 14 0.00031 40.6 17.5 169 379-597 28-210 (298)
240 KOG2817 Predicted E3 ubiquitin 90.1 0.2 4.4E-06 54.6 2.8 42 265-306 334-380 (394)
241 KOG1566 Conserved protein Mo25 89.7 16 0.00034 39.3 15.9 228 674-940 74-309 (342)
242 PF02985 HEAT: HEAT repeat; I 89.7 0.51 1.1E-05 32.0 3.5 29 544-572 1-29 (31)
243 KOG1788 Uncharacterized conser 89.2 68 0.0015 39.9 22.7 292 461-775 466-785 (2799)
244 PF08045 CDC14: Cell division 89.1 1.2 2.6E-05 46.9 7.3 82 878-962 124-209 (257)
245 PF12719 Cnd3: Nuclear condens 89.0 7.5 0.00016 42.7 14.2 226 601-843 41-286 (298)
246 COG5540 RING-finger-containing 89.0 0.27 5.9E-06 51.2 2.5 48 265-312 323-373 (374)
247 smart00638 LPD_N Lipoprotein N 88.9 26 0.00057 42.5 20.2 236 461-743 311-569 (574)
248 KOG2032 Uncharacterized conser 88.3 46 0.001 38.1 19.2 142 689-841 268-414 (533)
249 KOG2025 Chromosome condensatio 88.3 9.8 0.00021 45.1 14.4 127 739-915 62-189 (892)
250 PF11701 UNC45-central: Myosin 88.2 3.3 7.2E-05 40.6 9.6 146 545-705 5-156 (157)
251 KOG1832 HIV-1 Vpr-binding prot 88.0 42 0.00091 41.0 19.3 124 718-844 597-775 (1516)
252 KOG2879 Predicted E3 ubiquitin 88.0 0.39 8.4E-06 49.6 2.8 48 264-311 238-287 (298)
253 KOG2999 Regulator of Rac1, req 87.8 6.3 0.00014 45.1 12.2 155 504-665 85-243 (713)
254 PF04063 DUF383: Domain of unk 87.5 3.6 7.9E-05 41.6 9.5 125 691-823 7-157 (192)
255 KOG4653 Uncharacterized conser 87.5 12 0.00025 45.5 14.7 187 507-713 732-922 (982)
256 KOG2956 CLIP-associating prote 87.4 26 0.00057 39.8 16.5 143 544-707 330-476 (516)
257 PF07814 WAPL: Wings apart-lik 87.3 32 0.0007 38.9 18.0 91 504-594 23-116 (361)
258 PF14668 RICTOR_V: Rapamycin-i 87.1 2.8 6.1E-05 34.9 6.9 67 740-813 4-70 (73)
259 KOG0804 Cytoplasmic Zn-finger 86.6 0.36 7.9E-06 53.2 1.9 47 262-311 172-222 (493)
260 KOG2274 Predicted importin 9 [ 86.0 29 0.00062 42.6 16.9 222 688-961 459-690 (1005)
261 KOG1645 RING-finger-containing 86.0 0.32 7E-06 52.9 1.1 59 266-324 5-69 (463)
262 PF05918 API5: Apoptosis inhib 85.1 7.5 0.00016 45.8 11.7 90 783-915 35-124 (556)
263 COG5243 HRD1 HRD ubiquitin lig 85.1 0.8 1.7E-05 49.1 3.4 47 264-311 286-345 (491)
264 PF06025 DUF913: Domain of Unk 85.0 28 0.0006 39.6 16.0 123 699-826 80-209 (379)
265 KOG2032 Uncharacterized conser 84.8 48 0.0011 38.0 17.1 260 552-841 267-530 (533)
266 PF11701 UNC45-central: Myosin 84.8 9.1 0.0002 37.5 10.6 148 586-749 5-156 (157)
267 KOG3665 ZYG-1-like serine/thre 84.6 72 0.0016 39.5 20.3 196 702-957 494-694 (699)
268 KOG3665 ZYG-1-like serine/thre 84.5 89 0.0019 38.7 21.0 170 566-744 494-689 (699)
269 COG5209 RCD1 Uncharacterized p 83.4 5.4 0.00012 40.3 8.1 143 437-580 118-276 (315)
270 COG5209 RCD1 Uncharacterized p 83.2 26 0.00056 35.7 12.6 103 739-842 116-218 (315)
271 PF01347 Vitellogenin_N: Lipop 83.1 30 0.00065 42.4 16.7 198 502-744 395-614 (618)
272 PF07814 WAPL: Wings apart-lik 83.0 65 0.0014 36.4 17.9 91 463-553 23-116 (361)
273 COG5116 RPN2 26S proteasome re 82.0 6.4 0.00014 45.2 8.9 132 683-843 520-651 (926)
274 KOG1734 Predicted RING-contain 81.8 0.62 1.4E-05 47.8 1.0 57 263-319 222-289 (328)
275 PF14668 RICTOR_V: Rapamycin-i 81.4 5.9 0.00013 33.0 6.4 66 519-584 4-70 (73)
276 COG5109 Uncharacterized conser 81.3 0.95 2.1E-05 47.5 2.2 42 265-306 336-382 (396)
277 KOG2611 Neurochondrin/leucine- 81.2 67 0.0014 36.6 16.1 141 726-902 15-167 (698)
278 PF11707 Npa1: Ribosome 60S bi 80.8 85 0.0018 35.0 17.7 155 379-533 58-239 (330)
279 KOG0413 Uncharacterized conser 78.8 1.8E+02 0.004 36.3 22.5 88 738-841 946-1034(1529)
280 KOG0396 Uncharacterized conser 78.0 1.6 3.4E-05 47.3 2.6 48 265-312 330-380 (389)
281 KOG1820 Microtubule-associated 77.9 22 0.00048 44.1 12.6 186 682-915 256-442 (815)
282 PF10363 DUF2435: Protein of u 77.6 6.3 0.00014 34.7 5.8 69 636-708 4-72 (92)
283 PF12530 DUF3730: Protein of u 77.4 1E+02 0.0022 32.5 16.9 202 505-734 3-215 (234)
284 PF12530 DUF3730: Protein of u 77.2 1E+02 0.0022 32.5 17.8 136 464-616 3-151 (234)
285 COG5116 RPN2 26S proteasome re 77.2 19 0.00042 41.5 10.7 155 639-826 520-675 (926)
286 KOG1820 Microtubule-associated 76.7 17 0.00036 45.2 11.1 178 782-1003 265-446 (815)
287 KOG4464 Signaling protein RIC- 76.2 1.4E+02 0.003 33.6 16.4 81 390-471 110-197 (532)
288 smart00638 LPD_N Lipoprotein N 76.0 1.3E+02 0.0028 36.5 18.9 207 378-614 312-543 (574)
289 PF06371 Drf_GBD: Diaphanous G 75.9 4.3 9.4E-05 41.0 5.2 81 577-663 100-186 (187)
290 PF11864 DUF3384: Domain of un 75.7 81 0.0017 37.1 16.3 98 738-841 230-329 (464)
291 smart00744 RINGv The RING-vari 75.3 3.3 7.3E-05 31.5 3.0 40 268-307 2-49 (49)
292 KOG1020 Sister chromatid cohes 75.1 2.9E+02 0.0062 36.6 26.2 144 501-666 815-962 (1692)
293 KOG3161 Predicted E3 ubiquitin 74.9 1.5 3.2E-05 50.6 1.4 60 264-326 10-77 (861)
294 PF06371 Drf_GBD: Diaphanous G 74.2 16 0.00035 36.8 8.9 78 494-571 99-186 (187)
295 PF11707 Npa1: Ribosome 60S bi 74.2 1E+02 0.0022 34.4 15.9 160 637-799 58-237 (330)
296 PF02891 zf-MIZ: MIZ/SP-RING z 73.9 3.4 7.4E-05 31.6 2.8 45 265-309 2-50 (50)
297 PF14225 MOR2-PAG1_C: Cell mor 73.8 1.3E+02 0.0028 32.2 15.7 179 764-998 60-252 (262)
298 PF14500 MMS19_N: Dos2-interac 73.3 96 0.0021 33.3 14.7 210 340-572 4-237 (262)
299 PF08324 PUL: PUL domain; Int 72.8 38 0.00082 36.5 11.9 160 424-583 67-242 (268)
300 COG5218 YCG1 Chromosome conden 72.1 34 0.00074 39.8 11.1 104 764-915 91-195 (885)
301 PF01347 Vitellogenin_N: Lipop 69.8 85 0.0018 38.5 15.5 210 379-613 349-586 (618)
302 COG5098 Chromosome condensatio 69.5 12 0.00027 44.0 7.1 118 889-1006 301-421 (1128)
303 PF12031 DUF3518: Domain of un 69.4 9 0.00019 39.6 5.4 83 739-827 140-230 (257)
304 PF04641 Rtf2: Rtf2 RING-finge 68.8 5.2 0.00011 42.9 3.9 36 264-299 33-69 (260)
305 KOG2137 Protein kinase [Signal 68.8 89 0.0019 37.7 14.0 134 679-827 389-522 (700)
306 PF11864 DUF3384: Domain of un 68.4 2.5E+02 0.0053 33.1 18.4 233 474-734 42-313 (464)
307 COG0497 RecN ATPase involved i 68.1 2.6E+02 0.0057 33.3 17.5 77 38-119 175-255 (557)
308 KOG2956 CLIP-associating prote 66.5 2.5E+02 0.0053 32.4 17.4 30 764-799 448-477 (516)
309 PF12031 DUF3518: Domain of un 66.4 14 0.00031 38.2 6.1 80 392-473 139-228 (257)
310 KOG1785 Tyrosine kinase negati 66.2 3.1 6.7E-05 45.2 1.5 49 267-315 371-420 (563)
311 PF08324 PUL: PUL domain; Int 65.6 40 0.00086 36.3 10.1 156 462-618 64-233 (268)
312 COG5098 Chromosome condensatio 65.5 60 0.0013 38.6 11.5 129 473-617 908-1038(1128)
313 PF11793 FANCL_C: FANCL C-term 65.1 2.1 4.6E-05 35.4 0.0 47 265-311 2-66 (70)
314 KOG0827 Predicted E3 ubiquitin 64.4 4.6 0.0001 43.9 2.4 49 266-314 5-59 (465)
315 COG5627 MMS21 DNA repair prote 62.9 3.8 8.2E-05 41.4 1.3 52 265-316 189-244 (275)
316 PF08167 RIX1: rRNA processing 61.5 36 0.00077 33.7 8.0 112 680-800 26-144 (165)
317 KOG0301 Phospholipase A2-activ 59.9 2.2E+02 0.0047 34.2 14.6 163 428-597 553-729 (745)
318 PF11791 Aconitase_B_N: Aconit 58.9 18 0.00038 34.6 4.9 28 544-571 95-122 (154)
319 KOG4464 Signaling protein RIC- 58.2 3.2E+02 0.0069 30.9 21.6 154 588-752 49-231 (532)
320 KOG1243 Protein kinase [Genera 58.1 72 0.0016 38.3 10.7 189 719-961 327-516 (690)
321 KOG1243 Protein kinase [Genera 57.5 2E+02 0.0043 34.8 14.1 189 761-1004 327-520 (690)
322 COG5219 Uncharacterized conser 57.3 5.2 0.00011 48.4 1.4 45 267-311 1471-1523(1525)
323 PF06685 DUF1186: Protein of u 56.4 2.5E+02 0.0054 29.8 13.4 66 631-710 69-144 (249)
324 PF08167 RIX1: rRNA processing 56.4 69 0.0015 31.6 9.0 107 504-616 27-143 (165)
325 KOG3800 Predicted E3 ubiquitin 56.2 8.5 0.00018 40.6 2.6 31 282-312 22-52 (300)
326 KOG0301 Phospholipase A2-activ 55.8 2.7E+02 0.0059 33.4 14.5 167 385-555 552-728 (745)
327 KOG1001 Helicase-like transcri 55.1 3.5 7.5E-05 50.1 -0.5 49 266-315 455-504 (674)
328 KOG1493 Anaphase-promoting com 55.0 5.7 0.00012 32.6 0.8 47 265-311 31-81 (84)
329 PF11865 DUF3385: Domain of un 54.7 1.1E+02 0.0025 29.9 10.2 144 503-662 11-155 (160)
330 PF14500 MMS19_N: Dos2-interac 54.2 3.1E+02 0.0066 29.5 15.3 129 517-664 97-237 (262)
331 cd03568 VHS_STAM VHS domain fa 54.0 34 0.00075 32.9 6.2 71 335-405 37-109 (144)
332 cd03569 VHS_Hrs_Vps27p VHS dom 53.6 36 0.00077 32.7 6.3 71 335-405 41-113 (142)
333 cd03569 VHS_Hrs_Vps27p VHS dom 53.6 38 0.00083 32.5 6.4 72 680-751 42-113 (142)
334 KOG0825 PHD Zn-finger protein 52.9 3.8 8.2E-05 48.5 -0.6 48 264-312 122-172 (1134)
335 cd03568 VHS_STAM VHS domain fa 52.0 43 0.00094 32.2 6.5 72 680-751 38-109 (144)
336 KOG2137 Protein kinase [Signal 51.7 1.1E+02 0.0024 37.0 10.9 132 461-597 389-521 (700)
337 COG5218 YCG1 Chromosome conden 51.3 4E+02 0.0086 31.6 14.6 93 501-597 90-182 (885)
338 KOG1949 Uncharacterized conser 51.0 1E+02 0.0023 36.9 10.3 183 639-841 178-369 (1005)
339 KOG1039 Predicted E3 ubiquitin 50.8 10 0.00022 41.9 2.3 49 263-311 159-221 (344)
340 KOG0828 Predicted E3 ubiquitin 50.5 9.1 0.0002 43.1 1.8 34 279-312 602-635 (636)
341 PF11865 DUF3385: Domain of un 50.2 2E+02 0.0043 28.2 11.1 145 680-841 11-156 (160)
342 PF13251 DUF4042: Domain of un 50.1 85 0.0018 31.5 8.4 108 682-799 43-174 (182)
343 PF06416 DUF1076: Protein of u 48.9 13 0.00029 33.1 2.2 51 262-313 37-93 (113)
344 PF14726 RTTN_N: Rotatin, an a 48.2 1.8E+02 0.0038 26.0 9.1 67 459-525 28-94 (98)
345 KOG4692 Predicted E3 ubiquitin 48.1 12 0.00026 40.2 2.2 45 263-308 420-464 (489)
346 KOG0413 Uncharacterized conser 48.0 6.9E+02 0.015 31.7 24.5 126 784-961 945-1074(1529)
347 smart00288 VHS Domain present 47.8 42 0.00091 31.8 5.7 71 335-405 37-110 (133)
348 PF14225 MOR2-PAG1_C: Cell mor 47.1 3.9E+02 0.0085 28.6 19.7 168 502-692 60-241 (262)
349 cd03561 VHS VHS domain family; 47.1 60 0.0013 30.7 6.7 72 335-406 37-112 (133)
350 KOG2933 Uncharacterized conser 45.8 1.2E+02 0.0025 33.0 8.9 141 382-571 93-233 (334)
351 cd03567 VHS_GGA VHS domain fam 45.8 75 0.0016 30.4 7.0 73 634-707 37-115 (139)
352 PRK11088 rrmA 23S rRNA methylt 45.1 10 0.00022 41.1 1.2 26 265-290 2-30 (272)
353 cd03567 VHS_GGA VHS domain fam 45.0 71 0.0015 30.5 6.7 69 887-957 38-113 (139)
354 cd03561 VHS VHS domain family; 44.4 77 0.0017 30.0 6.9 72 680-751 38-111 (133)
355 PF10363 DUF2435: Protein of u 43.6 46 0.00099 29.3 4.8 68 766-842 5-72 (92)
356 COG5194 APC11 Component of SCF 43.2 18 0.00038 30.2 1.9 28 282-310 53-80 (88)
357 smart00288 VHS Domain present 42.9 67 0.0014 30.4 6.2 71 680-750 38-109 (133)
358 PF06685 DUF1186: Protein of u 42.6 2.8E+02 0.0061 29.4 11.3 80 499-582 70-153 (249)
359 PF14569 zf-UDP: Zinc-binding 41.4 31 0.00066 28.8 3.0 47 266-312 10-63 (80)
360 COG5175 MOT2 Transcriptional r 41.3 18 0.00039 38.6 2.2 50 264-314 14-67 (480)
361 PLN02189 cellulose synthase 41.1 20 0.00043 45.2 2.9 46 266-311 35-87 (1040)
362 PF12252 SidE: Dot/Icm substra 40.9 5.9E+02 0.013 32.5 14.6 135 80-229 1015-1166(1439)
363 PF14726 RTTN_N: Rotatin, an a 40.3 77 0.0017 28.2 5.7 69 885-957 28-97 (98)
364 KOG4231 Intracellular membrane 40.0 31 0.00068 39.3 3.9 63 551-616 336-399 (763)
365 PLN02195 cellulose synthase A 38.3 21 0.00047 44.5 2.6 45 267-311 8-59 (977)
366 PF00790 VHS: VHS domain; Int 37.4 62 0.0013 30.9 5.2 70 680-749 43-115 (140)
367 PF13001 Ecm29: Proteasome sta 37.1 7.8E+02 0.017 29.2 16.3 227 689-967 247-495 (501)
368 KOG1525 Sister chromatid cohes 36.8 1.2E+03 0.025 31.2 20.6 75 763-845 258-332 (1266)
369 KOG1566 Conserved protein Mo25 36.7 6E+02 0.013 27.8 17.4 142 475-619 139-289 (342)
370 PF00790 VHS: VHS domain; Int 36.7 1.2E+02 0.0025 29.0 7.0 69 887-957 42-115 (140)
371 PF08506 Cse1: Cse1; InterPro 36.5 1.6E+02 0.0035 33.3 9.1 143 681-837 212-370 (370)
372 PF11791 Aconitase_B_N: Aconit 36.3 1.2E+02 0.0026 29.2 6.6 28 888-915 95-122 (154)
373 PF11894 DUF3414: Protein of u 36.2 1.4E+03 0.031 32.0 28.6 61 353-413 582-646 (1691)
374 PF13251 DUF4042: Domain of un 35.3 3.2E+02 0.0069 27.5 9.9 112 638-752 43-174 (182)
375 PF09324 DUF1981: Domain of un 35.0 1.2E+02 0.0026 26.2 6.0 66 884-956 14-84 (86)
376 PRK09169 hypothetical protein; 34.5 1.6E+03 0.034 31.9 40.4 56 348-403 177-232 (2316)
377 KOG0298 DEAD box-containing he 34.4 14 0.0003 47.0 0.1 43 264-307 1152-1195(1394)
378 KOG1848 Uncharacterized conser 33.8 7.1E+02 0.015 32.9 14.3 110 584-707 840-957 (1610)
379 KOG2933 Uncharacterized conser 33.7 2E+02 0.0043 31.2 8.4 142 681-841 90-233 (334)
380 PF09723 Zn-ribbon_8: Zinc rib 33.5 9.7 0.00021 27.9 -0.8 33 262-308 2-34 (42)
381 PLN02638 cellulose synthase A 33.0 29 0.00062 44.0 2.5 46 266-311 18-70 (1079)
382 PF14447 Prok-RING_4: Prokaryo 32.3 28 0.00061 27.0 1.4 45 267-314 9-53 (55)
383 COG4530 Uncharacterized protei 32.2 30 0.00065 30.6 1.8 29 266-294 10-43 (129)
384 PF12830 Nipped-B_C: Sister ch 32.1 82 0.0018 31.8 5.3 66 888-961 9-75 (187)
385 KOG1848 Uncharacterized conser 31.8 9E+02 0.019 32.1 14.7 114 631-752 836-958 (1610)
386 TIGR00634 recN DNA repair prot 31.8 9.9E+02 0.022 28.8 19.4 77 40-121 181-263 (563)
387 PF14570 zf-RING_4: RING/Ubox 31.3 47 0.001 25.2 2.5 43 268-310 1-47 (48)
388 PLN02436 cellulose synthase A 30.9 36 0.00077 43.1 2.8 47 265-311 36-89 (1094)
389 PF08506 Cse1: Cse1; InterPro 30.9 5.3E+02 0.012 29.2 12.0 138 557-703 225-370 (370)
390 PF04499 SAPS: SIT4 phosphatas 30.7 2.6E+02 0.0057 32.9 9.8 125 762-915 19-147 (475)
391 PF12726 SEN1_N: SEN1 N termin 30.6 1.2E+03 0.025 29.3 24.8 472 463-998 40-551 (727)
392 PF01603 B56: Protein phosphat 30.5 6.5E+02 0.014 29.0 12.9 232 715-1001 126-371 (409)
393 PF13001 Ecm29: Proteasome sta 29.8 2.5E+02 0.0054 33.4 9.6 169 601-799 251-443 (501)
394 PF10272 Tmpp129: Putative tra 29.5 39 0.00084 37.7 2.6 34 278-311 301-351 (358)
395 PF12830 Nipped-B_C: Sister ch 29.3 6E+02 0.013 25.5 12.2 148 680-841 9-166 (187)
396 PLN03076 ARF guanine nucleotid 29.2 1.7E+03 0.037 31.1 17.8 315 503-840 1086-1487(1780)
397 PF14446 Prok-RING_1: Prokaryo 29.0 46 0.001 25.9 2.1 28 265-292 5-36 (54)
398 PF05605 zf-Di19: Drought indu 28.3 1.4E+02 0.003 23.2 4.8 33 264-308 1-39 (54)
399 KOG1571 Predicted E3 ubiquitin 27.9 27 0.00059 38.2 1.0 44 264-311 304-347 (355)
400 PLN02915 cellulose synthase A 27.8 39 0.00084 42.7 2.4 46 266-311 16-68 (1044)
401 KOG1992 Nuclear export recepto 27.8 1.3E+03 0.028 28.9 26.4 469 423-998 9-525 (960)
402 PF04821 TIMELESS: Timeless pr 27.4 7.9E+02 0.017 26.3 15.4 57 350-406 9-72 (266)
403 KOG4172 Predicted E3 ubiquitin 27.2 23 0.00049 27.2 0.2 44 267-310 9-53 (62)
404 PRK10869 recombination and rep 26.8 1.2E+03 0.026 28.1 20.5 76 41-121 178-256 (553)
405 cd08329 CARD_BIRC2_BIRC3 Caspa 26.7 1.5E+02 0.0033 26.1 5.3 63 35-98 7-70 (94)
406 KOG2114 Vacuolar assembly/sort 26.5 1.1E+02 0.0024 37.5 5.7 41 264-308 839-880 (933)
407 PF03130 HEAT_PBS: PBS lyase H 26.4 34 0.00074 22.2 0.9 26 518-553 1-26 (27)
408 KOG4185 Predicted E3 ubiquitin 26.2 52 0.0011 36.1 2.9 51 278-328 22-77 (296)
409 PF10521 DUF2454: Protein of u 25.9 5E+02 0.011 28.1 10.5 52 460-511 118-171 (282)
410 PF14663 RasGEF_N_2: Rapamycin 24.8 4.8E+02 0.01 23.9 8.5 40 461-500 8-47 (115)
411 cd08330 CARD_ASC_NALP1 Caspase 24.6 3.3E+02 0.0071 23.3 6.9 53 40-93 4-56 (82)
412 PF11229 DUF3028: Protein of u 24.6 1.2E+03 0.026 27.5 18.8 194 529-733 28-248 (589)
413 KOG1949 Uncharacterized conser 24.5 7E+02 0.015 30.4 11.3 152 681-841 176-330 (1005)
414 cd08324 CARD_NOD1_CARD4 Caspas 24.5 4.5E+02 0.0098 22.6 7.3 26 40-65 4-29 (85)
415 PF01603 B56: Protein phosphat 24.5 1.1E+03 0.024 27.1 16.1 77 539-617 129-205 (409)
416 PF00619 CARD: Caspase recruit 24.3 3.5E+02 0.0076 22.8 7.3 63 39-102 4-67 (85)
417 KOG1410 Nuclear transport rece 24.2 1.4E+03 0.029 28.0 15.4 243 686-958 13-282 (1082)
418 PF12074 DUF3554: Domain of un 24.2 9.4E+02 0.02 26.7 12.7 215 501-733 21-255 (339)
419 PF08216 CTNNBL: Catenin-beta- 24.1 1.1E+02 0.0025 27.6 4.0 42 787-830 63-104 (108)
420 TIGR02605 CxxC_CxxC_SSSS putat 24.1 22 0.00049 27.3 -0.3 33 262-308 2-34 (52)
421 PF10521 DUF2454: Protein of u 24.0 6.3E+02 0.014 27.4 10.8 71 765-841 120-202 (282)
422 smart00531 TFIIE Transcription 23.0 45 0.00098 32.2 1.5 37 264-312 98-135 (147)
423 PF10274 ParcG: Parkin co-regu 22.2 7.6E+02 0.016 24.9 9.8 70 503-572 39-109 (183)
424 cd03565 VHS_Tom1 VHS domain fa 22.2 2.6E+02 0.0057 26.7 6.5 71 335-405 38-114 (141)
425 COG5656 SXM1 Importin, protein 22.2 1.6E+03 0.034 27.9 23.0 343 522-958 389-755 (970)
426 PF05290 Baculo_IE-1: Baculovi 22.0 85 0.0018 29.3 2.8 50 264-313 79-134 (140)
427 PF10915 DUF2709: Protein of u 21.5 72 0.0016 31.5 2.4 39 264-311 86-124 (238)
428 KOG1940 Zn-finger protein [Gen 21.1 64 0.0014 34.5 2.2 44 264-308 157-204 (276)
429 KOG4713 Cyclin-dependent kinas 21.1 1.6E+02 0.0036 28.7 4.6 45 49-93 136-180 (189)
430 PF08389 Xpo1: Exportin 1-like 21.0 6.9E+02 0.015 23.3 10.0 63 723-794 83-148 (148)
431 PF08216 CTNNBL: Catenin-beta- 20.9 1.3E+02 0.0029 27.2 3.8 43 477-519 62-104 (108)
432 PF06012 DUF908: Domain of Unk 20.8 4.3E+02 0.0093 29.4 8.9 64 518-581 238-306 (329)
433 PF05883 Baculo_RING: Baculovi 20.5 63 0.0014 30.4 1.8 45 265-310 26-79 (134)
434 PF08389 Xpo1: Exportin 1-like 20.5 4.5E+02 0.0098 24.6 8.1 104 420-526 26-148 (148)
435 KOG2199 Signal transducing ada 20.1 3.5E+02 0.0076 30.3 7.4 70 887-958 45-116 (462)
No 1
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=100.00 E-value=7.4e-53 Score=527.05 Aligned_cols=620 Identities=20% Similarity=0.264 Sum_probs=525.5
Q ss_pred hhhhhhhccCc--chHHHHHHHHHHHHHHhhchhhhhhHhh-cCchHHHHHHHcCCCHHHHHHHHHHHHHhccCChhhHH
Q 001833 337 IASMKPKLVST--EVEEVLHCLEQLQDLCQQRDQHREWVIL-ENYIPKLIYLLGSKNRDVRNRALIILHILVKDSNDTKE 413 (1008)
Q Consensus 337 ~~~~~~~l~~~--~~~~~~~al~~L~~l~~~~~~~r~~i~~-~g~i~~L~~lL~s~~~~~~~~Al~~L~~Ls~~~~~~k~ 413 (1008)
+..++.++.++ +++.+..++.+|+.++++++++|..+.+ .|+||.|+.+|++++..+|..|+.+|.+|+.++ ++|.
T Consensus 15 v~~Lve~L~s~~ss~~~~~~Al~~Lr~Lak~~~enR~~Ia~~aGaIP~LV~lL~sg~~~vk~nAaaaL~nLS~~e-~nk~ 93 (2102)
T PLN03200 15 VAQCIEQLRAKSSSPQEKELTTARLLELAKTREEARKAIGSHSQAMPLLVSLLRSGTLGAKVNAAAVLGVLCKEE-DLRV 93 (2102)
T ss_pred HHHHHHHHHcccCCHHHHHHHHHHHHHHHhcChHHHHHHHHccCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCH-HHHH
Confidence 44455666655 6788999999999999999999999986 899999999999999999999999999999986 8999
Q ss_pred HhhccCCcHHHHHHHhcc-ChhHHHHHHHHHHHhccC---chhhHHhhcccchHHHHHHHhcCCC---hHHHHHHHHHHH
Q 001833 414 RLANGDDAVESIVRSLGR-RIEERKLAVALLLELSTC---NTLRDQIGDVQGCILLLVTMASSDD---NQASRDAQELLE 486 (1008)
Q Consensus 414 ~i~~~~g~i~~Lv~~L~~-~~~~~~~A~~~L~~Ls~~---~~~~~~i~~~~g~i~~Lv~lL~~~~---~~~~~~a~~aL~ 486 (1008)
.|+. .|++++|+++|.+ +.+.++.|+.+|++|+.+ +.++..|+...|+||.|+.++++++ ..++..++.+|+
T Consensus 94 ~Iv~-~GaIppLV~LL~sGs~eaKe~AA~AL~sLS~~~~~D~~~~~I~v~~GaVp~Lv~lL~~gsk~d~~L~~~Av~AL~ 172 (2102)
T PLN03200 94 KVLL-GGCIPPLLSLLKSGSAEAQKAAAEAIYAVSSGGLSDHVGSKIFSTEGVVPSLWDQLQPGNKQDKVVEGLLTGALR 172 (2102)
T ss_pred HHHH-cCChHHHHHHHHCCCHHHHHHHHHHHHHHHcCcchhhhhhhhhhhcCChHHHHHHHhCCchhhHHHHHHHHHHHH
Confidence 9998 9999999999977 467899999999999986 5567677766899999999999764 345677889999
Q ss_pred hhcCCcccHH-HHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHHcCC-hhhHHHHhhcCcHHHHHHHhccC-CHHHHHHH
Q 001833 487 NLSFSDDNVV-QMAKANYFKHLLQRLSAGPESVKMRMATTLAEMELT-DHHKASLLEGNVLGPLLHLVSRG-DIQMKKVA 563 (1008)
Q Consensus 487 ~Ls~~~~n~~-~i~~~g~v~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~-~~~k~~i~~~g~i~~Lv~lL~~~-~~~~~~~A 563 (1008)
|||.+++++. .+++.|+++.|+.+|+++++..+.+|+++|.+++.. ++.+..+++.|+||.|+++|+++ ++.+|+.|
T Consensus 173 nLs~~~en~~~~IIeaGaVp~LV~LLsS~d~~lQ~eAa~aLa~Lass~ee~~~aVIeaGaVP~LV~LL~sg~~~~VRE~A 252 (2102)
T PLN03200 173 NLCGSTDGFWSATLEAGGVDILVKLLSSGNSDAQANAASLLARLMMAFESSISKVLDAGAVKQLLKLLGQGNEVSVRAEA 252 (2102)
T ss_pred HHhcCccchHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHccCCChHHHHHH
Confidence 9999999875 568999999999999999999999999999888755 57899999999999999999875 56899999
Q ss_pred HHHHHHhhC-CCchhHHHHhcCChHHHHHHhcccCC------CCcchHHHHHHHHHHHhccccc------------cc--
Q 001833 564 VKALRNLSS-VPQNGLQMIKEGAVGPLVDLLLHHSS------SSSSLREETATAIMHLAVSTMY------------QE-- 622 (1008)
Q Consensus 564 ~~aL~~L~~-~~~~~~~i~~~G~v~~Ll~ll~~~~~------~~~~~~~~a~~~L~nLa~~~~~------------~~-- 622 (1008)
+++|.+||. +++++..+++.|++|.|++++..... ....++++|+|+|.||+.+... +.
T Consensus 253 A~AL~nLAs~s~e~r~~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcgg~~~ll~~L~~ll~s~rd~~ 332 (2102)
T PLN03200 253 AGALEALSSQSKEAKQAIADAGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICGGMSALILYLGELSESPRSPA 332 (2102)
T ss_pred HHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhCCchhhHHHHHHhhcccchHH
Confidence 999999997 57889999999999999999975431 1245799999999999984111 00
Q ss_pred -----------------c------------------------CCcc------------------cccccchhHHHHHHHh
Q 001833 623 -----------------S------------------------SQTP------------------VTLLESDKEIFMLFSL 643 (1008)
Q Consensus 623 -----------------~------------------------~~~~------------------~~~l~~~~~i~~L~~l 643 (1008)
. .+.. ...+.+.++++.|+.|
T Consensus 333 ~~ada~gALayll~l~d~~~~~~~~i~~~~v~~~LV~Llr~k~p~~vqe~V~eALasl~gN~~l~~~L~~~daik~LV~L 412 (2102)
T PLN03200 333 PIADTLGALAYALMVFDSSAESTRAFDPTVIEQILVKLLKPRDTKLVQERIIEALASLYGNAYLSRKLNHAEAKKVLVGL 412 (2102)
T ss_pred HHHHHHhhHHHHHHhcCCchhhhhhccccccHHHHHHHhCCCCCchhHHHHHHHHHHhcCChHHHHHHHhccchhhhhhh
Confidence 0 0000 0123344566778888
Q ss_pred hccCChHHHHHHHHHHHHhccCCChhhHHHHhhhcCChHHHHHhhccCChhHHHHHHHHHHHhccCCChhHHHhhhcccc
Q 001833 644 INLTGPNVQQRILQTFNALCRSPSAGNIKTTLTQCSAIPVLVQLCEHDNENVRANAVKLFCCLVDDGDEAIIREHVGQKC 723 (1008)
Q Consensus 644 l~~~~~~v~~~al~aL~~L~~~~~~~~~~~~i~e~~~i~~Lv~ll~~~~~~v~~~a~~~L~~Ls~~~~~~~~~~~~~~~~ 723 (1008)
+...+.++|..++++|++|+.+ +.+.+..+.+.|+++.|+++|.++++.++..|+++|.+++ .++++....+.+.|+
T Consensus 413 L~~~~~evQ~~Av~aL~~L~~~--~~e~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa-~~ndenr~aIieaGa 489 (2102)
T PLN03200 413 ITMATADVQEELIRALSSLCCG--KGGLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILT-DEVDESKWAITAAGG 489 (2102)
T ss_pred hccCCHHHHHHHHHHHHHHhCC--CHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHH-cCCHHHHHHHHHCCC
Confidence 8888899999999999999985 5677889999999999999999999999999999999998 667778888899999
Q ss_pred hHHHHHHhcCCCCHHHHHHHHHHHhcCCC-ChhhHHHHHhcCCHHHHHHHhhCCCCCCCchhhHHHHHHHHHHHhcCCCC
Q 001833 724 LETLVTIIQSSHNEEEIASAMGILSKLPE-VPQFTQWLLDAGALPIVLNFLKNGRQNDPNRFQVVENAVGALRRFTAPTN 802 (1008)
Q Consensus 724 i~~Lv~lL~~~~~~~v~~~a~~~L~nL~~-~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~v~~~a~~aL~~L~~~~~ 802 (1008)
++.|+++|.++ +.+++..|+++|+||+. +++.+..+.+.|++++|+++|++ .+...++.++++|.+++.+.+
T Consensus 490 IP~LV~LL~s~-~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL~s------gd~~~q~~Aa~AL~nLi~~~d 562 (2102)
T PLN03200 490 IPPLVQLLETG-SQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLLKN------GGPKGQEIAAKTLTKLVRTAD 562 (2102)
T ss_pred HHHHHHHHcCC-CHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHHhC------CCHHHHHHHHHHHHHHHhccc
Confidence 99999999974 66899999999999998 44555556688999999999998 567899999999999975322
Q ss_pred HHH------------------------------------HHHHHHcCChHHHHHHhhcCChHHHHHHHHHHhhhhhcCCC
Q 001833 803 LEW------------------------------------QKRAAEAGVIPKLVQLLEYGTTLTKEHAATSLARFSKNSLG 846 (1008)
Q Consensus 803 ~~~------------------------------------~~~l~~~g~l~~Lv~lL~~~~~~v~~~Aa~aL~nLs~~~~~ 846 (1008)
.+. .+.....|++|.|+++++++++.+++.|+|+|.+++..
T Consensus 563 ~~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~--- 639 (2102)
T PLN03200 563 AATISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSS--- 639 (2102)
T ss_pred hhHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcC---
Confidence 211 11112468999999999999999999999999999832
Q ss_pred CCCCCCCCCcccccCCCCCCcccccCcccCcccchhHhhccchHHHHHhhcCCChhhhHHHHHHHHhhh-cccccchhhH
Q 001833 847 LSRPIPKRKGFWCFSPPPEIGCQVHGGLCGIESSFCLLEANAVRPLVRVLEDPDHGACEASLDALVTLI-EGERLQNGSK 925 (1008)
Q Consensus 847 l~~~~~~~~g~~~~~~~~~~~c~vh~~~c~~~~~~~l~~~g~i~~Lv~lL~~~d~~v~~~al~aL~~L~-~~~~~~~~~~ 925 (1008)
+.++...++..|+|+||+.+|.+.+.+++..+.+||.++. .+ .+..+.
T Consensus 640 -----------------------------~~d~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~--~~~q~~ 688 (2102)
T PLN03200 640 -----------------------------RQDLCESLATDEIINPCIKLLTNNTEAVATQSARALAALSRSI--KENRKV 688 (2102)
T ss_pred -----------------------------ChHHHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCC--CHHHHH
Confidence 3344556889999999999999999999999999999999 33 224456
Q ss_pred HHHhcCchHHHHHHhcCCChHHHHHHHHHHHHHhcChHHHHHhccc-cCchhhhhcccCCchhhHHHHHHHHHHhccc
Q 001833 926 VLEDANAIDRMVRFLSSPSPKLQEKALDSVERIFRLPEFKQKYGKS-AQMPLVDLTQRGNSSMKSLSARVLAHLNVLQ 1002 (1008)
Q Consensus 926 ~i~~~~~i~~l~~ll~~~~~~l~~~a~~~L~~l~~~~~~~~~~~~~-~~~~Lv~l~~~~~~~~~~~Aa~~L~~L~~~~ 1002 (1008)
.+.+.|++++|++++++.+.++.+.|+.+|.+++..++.+..+... +..+|++++++|+++.|+.|+.+|.+|.+-.
T Consensus 689 ~~v~~GaV~pL~~LL~~~d~~v~e~Al~ALanLl~~~e~~~ei~~~~~I~~Lv~lLr~G~~~~k~~Aa~AL~~L~~~~ 766 (2102)
T PLN03200 689 SYAAEDAIKPLIKLAKSSSIEVAEQAVCALANLLSDPEVAAEALAEDIILPLTRVLREGTLEGKRNAARALAQLLKHF 766 (2102)
T ss_pred HHHHcCCHHHHHHHHhCCChHHHHHHHHHHHHHHcCchHHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHhCC
Confidence 6789999999999999999999999999999999999988877644 4788999999999999999999999998653
No 2
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=100.00 E-value=2.8e-48 Score=486.06 Aligned_cols=616 Identities=18% Similarity=0.221 Sum_probs=503.4
Q ss_pred hhhhhhhccCcchHHHHHHHHHHHHHHhhchhhhhhHhhcCchHHHHHHHcCCCHHHHHHHHHHHHHhccCC--hhhHHH
Q 001833 337 IASMKPKLVSTEVEEVLHCLEQLQDLCQQRDQHREWVILENYIPKLIYLLGSKNRDVRNRALIILHILVKDS--NDTKER 414 (1008)
Q Consensus 337 ~~~~~~~l~~~~~~~~~~al~~L~~l~~~~~~~r~~i~~~g~i~~L~~lL~s~~~~~~~~Al~~L~~Ls~~~--~~~k~~ 414 (1008)
+|.+...|.++++..+..++..|.+++.+ +.+|..+...|++|.|+.+|++++.+.|+.|+.+|.+|+.++ +.++..
T Consensus 60 IP~LV~lL~sg~~~vk~nAaaaL~nLS~~-e~nk~~Iv~~GaIppLV~LL~sGs~eaKe~AA~AL~sLS~~~~~D~~~~~ 138 (2102)
T PLN03200 60 MPLLVSLLRSGTLGAKVNAAAVLGVLCKE-EDLRVKVLLGGCIPPLLSLLKSGSAEAQKAAAEAIYAVSSGGLSDHVGSK 138 (2102)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhcC-HHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHHHHHHHHcCcchhhhhhh
Confidence 66778888888888899999999999977 668888889999999999999999999999999999999875 455544
Q ss_pred -hhccCCcHHHHHHHhccCh----hHHHHHHHHHHHhccCchhhHH-hhcccchHHHHHHHhcCCChHHHHHHHHHHHhh
Q 001833 415 -LANGDDAVESIVRSLGRRI----EERKLAVALLLELSTCNTLRDQ-IGDVQGCILLLVTMASSDDNQASRDAQELLENL 488 (1008)
Q Consensus 415 -i~~~~g~i~~Lv~~L~~~~----~~~~~A~~~L~~Ls~~~~~~~~-i~~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L 488 (1008)
++. .|+++.|+.+|..+. -.++.|+.+|++|+..++.+.. +.+ .|+++.|+.+++++++..+..|+.+|.++
T Consensus 139 I~v~-~GaVp~Lv~lL~~gsk~d~~L~~~Av~AL~nLs~~~en~~~~IIe-aGaVp~LV~LLsS~d~~lQ~eAa~aLa~L 216 (2102)
T PLN03200 139 IFST-EGVVPSLWDQLQPGNKQDKVVEGLLTGALRNLCGSTDGFWSATLE-AGGVDILVKLLSSGNSDAQANAASLLARL 216 (2102)
T ss_pred hhhh-cCChHHHHHHHhCCchhhHHHHHHHHHHHHHHhcCccchHHHHHH-cCCHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 446 899999999998752 2356778999999998886644 454 79999999999999999999999999988
Q ss_pred cCC-cccHHHHHhcCcHHHHHHHHhcCC-HHHHHHHHHHHHHHcC-ChhhHHHHhhcCcHHHHHHHhccCC---------
Q 001833 489 SFS-DDNVVQMAKANYFKHLLQRLSAGP-ESVKMRMATTLAEMEL-TDHHKASLLEGNVLGPLLHLVSRGD--------- 556 (1008)
Q Consensus 489 s~~-~~n~~~i~~~g~v~~Lv~~L~~~~-~~~~~~aa~~L~~Ls~-~~~~k~~i~~~g~i~~Lv~lL~~~~--------- 556 (1008)
+.+ ++.+..+++.|+|+.|+++|++++ +.+|++|+++|++|+. +++++..+++.|++|.|++++.+++
T Consensus 217 ass~ee~~~aVIeaGaVP~LV~LL~sg~~~~VRE~AA~AL~nLAs~s~e~r~~Iv~aGgIp~LI~lL~sp~~e~~~~~~~ 296 (2102)
T PLN03200 217 MMAFESSISKVLDAGAVKQLLKLLGQGNEVSVRAEAAGALEALSSQSKEAKQAIADAGGIPALINATVAPSKEFMQGEFA 296 (2102)
T ss_pred HcCChHHHHHHHHCCCHHHHHHHHccCCChHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhCcchhhhccccc
Confidence 865 668999999999999999998764 5899999999999976 4689999999999999999998654
Q ss_pred HHHHHHHHHHHHHhhCCC-c-----------hh--H-----------------------HHHhc-CChHHHHHHhcccCC
Q 001833 557 IQMKKVAVKALRNLSSVP-Q-----------NG--L-----------------------QMIKE-GAVGPLVDLLLHHSS 598 (1008)
Q Consensus 557 ~~~~~~A~~aL~~L~~~~-~-----------~~--~-----------------------~i~~~-G~v~~Ll~ll~~~~~ 598 (1008)
...+++|+++|.|||... . .+ . .+++. .+.+.|++++...+.
T Consensus 297 ~~Lqe~AvwALsNIcgg~~~ll~~L~~ll~s~rd~~~~ada~gALayll~l~d~~~~~~~~i~~~~v~~~LV~Llr~k~p 376 (2102)
T PLN03200 297 QALQENAMGALANICGGMSALILYLGELSESPRSPAPIADTLGALAYALMVFDSSAESTRAFDPTVIEQILVKLLKPRDT 376 (2102)
T ss_pred hHHHHHHHHHHHHHhCCchhhHHHHHHhhcccchHHHHHHHHhhHHHHHHhcCCchhhhhhccccccHHHHHHHhCCCCC
Confidence 345899999999999631 1 11 0 00111 122444444443211
Q ss_pred C---------------------------------------CcchHHHHHHHHHHHhccccccccCCcccccccchhHHHH
Q 001833 599 S---------------------------------------SSSLREETATAIMHLAVSTMYQESSQTPVTLLESDKEIFM 639 (1008)
Q Consensus 599 ~---------------------------------------~~~~~~~a~~~L~nLa~~~~~~~~~~~~~~~l~~~~~i~~ 639 (1008)
. ..+.++.++++|++|+.++.... +.+...++++.
T Consensus 377 ~~vqe~V~eALasl~gN~~l~~~L~~~daik~LV~LL~~~~~evQ~~Av~aL~~L~~~~~e~~------~aIi~~ggIp~ 450 (2102)
T PLN03200 377 KLVQERIIEALASLYGNAYLSRKLNHAEAKKVLVGLITMATADVQEELIRALSSLCCGKGGLW------EALGGREGVQL 450 (2102)
T ss_pred chhHHHHHHHHHHhcCChHHHHHHHhccchhhhhhhhccCCHHHHHHHHHHHHHHhCCCHHHH------HHHHHcCcHHH
Confidence 1 14578888888888886644333 25667789999
Q ss_pred HHHhhccCChHHHHHHHHHHHHhccCCChhhHHHHhhhcCChHHHHHhhccCChhHHHHHHHHHHHhccCCChhHHHhhh
Q 001833 640 LFSLINLTGPNVQQRILQTFNALCRSPSAGNIKTTLTQCSAIPVLVQLCEHDNENVRANAVKLFCCLVDDGDEAIIREHV 719 (1008)
Q Consensus 640 L~~ll~~~~~~v~~~al~aL~~L~~~~~~~~~~~~i~e~~~i~~Lv~ll~~~~~~v~~~a~~~L~~Ls~~~~~~~~~~~~ 719 (1008)
|+.+|.+.++.+|+.++++|.+++.. +.+.+..+.+.|++|.|+++|.+++.+++..|+|+|.|++ .+++.....+.
T Consensus 451 LV~LL~s~s~~iQ~~A~~~L~nLa~~--ndenr~aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa-~~~~qir~iV~ 527 (2102)
T PLN03200 451 LISLLGLSSEQQQEYAVALLAILTDE--VDESKWAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLC-CHSEDIRACVE 527 (2102)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHcC--CHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHh-CCcHHHHHHHH
Confidence 99999999999999999999999874 5667888999999999999999999999999999999998 44433444444
Q ss_pred cccchHHHHHHhcCCCCHHHHHHHHHHHhcCCC--Chh------------------------------------hHHHHH
Q 001833 720 GQKCLETLVTIIQSSHNEEEIASAMGILSKLPE--VPQ------------------------------------FTQWLL 761 (1008)
Q Consensus 720 ~~~~i~~Lv~lL~~~~~~~v~~~a~~~L~nL~~--~~~------------------------------------~~~~l~ 761 (1008)
+.|+++.|+++|.++ +.+.+..|+++|.+|.. +.. .+....
T Consensus 528 ~aGAIppLV~LL~sg-d~~~q~~Aa~AL~nLi~~~d~~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~ 606 (2102)
T PLN03200 528 SAGAVPALLWLLKNG-GPKGQEIAAKTLTKLVRTADAATISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSA 606 (2102)
T ss_pred HCCCHHHHHHHHhCC-CHHHHHHHHHHHHHHHhccchhHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhh
Confidence 779999999999985 56888999999999853 111 011122
Q ss_pred hcCCHHHHHHHhhCCCCCCCchhhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHHHhhcCChHHHHHHHHHHhhhh
Q 001833 762 DAGALPIVLNFLKNGRQNDPNRFQVVENAVGALRRFTAPTNLEWQKRAAEAGVIPKLVQLLEYGTTLTKEHAATSLARFS 841 (1008)
Q Consensus 762 ~~g~l~~Lv~lL~~~~~~~~~~~~v~~~a~~aL~~L~~~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~v~~~Aa~aL~nLs 841 (1008)
..|+++.|++++++ .+..+++.|+|+|.+++.+ ++++.+.+...|++|+++.+|++++.++++.|+|+|.|++
T Consensus 607 ~~ggL~~Lv~LL~s------gs~~ikk~Aa~iLsnL~a~-~~d~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~ 679 (2102)
T PLN03200 607 ANDALRTLIQLLSS------SKEETQEKAASVLADIFSS-RQDLCESLATDEIINPCIKLLTNNTEAVATQSARALAALS 679 (2102)
T ss_pred ccccHHHHHHHHcC------CCHHHHHHHHHHHHHHhcC-ChHHHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHH
Confidence 46899999999999 5789999999999999997 8998999999999999999999999999999999999999
Q ss_pred hcCCCCCCCCCCCCcccccCCCCCCcccccCcccCcccchhHhhccchHHHHHhhcCCChhhhHHHHHHHHhhh-ccccc
Q 001833 842 KNSLGLSRPIPKRKGFWCFSPPPEIGCQVHGGLCGIESSFCLLEANAVRPLVRVLEDPDHGACEASLDALVTLI-EGERL 920 (1008)
Q Consensus 842 ~~~~~l~~~~~~~~g~~~~~~~~~~~c~vh~~~c~~~~~~~l~~~g~i~~Lv~lL~~~d~~v~~~al~aL~~L~-~~~~~ 920 (1008)
... +.++...+++.|+|+||+++|.+.|..+.+.|+.||.|++ ++
T Consensus 680 ~~~-------------------------------~~~q~~~~v~~GaV~pL~~LL~~~d~~v~e~Al~ALanLl~~~--- 725 (2102)
T PLN03200 680 RSI-------------------------------KENRKVSYAAEDAIKPLIKLAKSSSIEVAEQAVCALANLLSDP--- 725 (2102)
T ss_pred hCC-------------------------------CHHHHHHHHHcCCHHHHHHHHhCCChHHHHHHHHHHHHHHcCc---
Confidence 421 3445667899999999999999999999999999999999 66
Q ss_pred chhhHHHHhcCchHHHHHHhcCCChHHHHHHHHHHHHHhcChHHHH----Hhccc-cCchhhhhcccCCchhhHH--HHH
Q 001833 921 QNGSKVLEDANAIDRMVRFLSSPSPKLQEKALDSVERIFRLPEFKQ----KYGKS-AQMPLVDLTQRGNSSMKSL--SAR 993 (1008)
Q Consensus 921 ~~~~~~i~~~~~i~~l~~ll~~~~~~l~~~a~~~L~~l~~~~~~~~----~~~~~-~~~~Lv~l~~~~~~~~~~~--Aa~ 993 (1008)
++...+.+.|++++|++++++++++.|+.|.|+|.++.+.....+ ..... ...+|++++...|.+.... |-.
T Consensus 726 -e~~~ei~~~~~I~~Lv~lLr~G~~~~k~~Aa~AL~~L~~~~~~~~~~~~~~~~~g~v~~l~~~L~~~~~~~~~~~~al~ 804 (2102)
T PLN03200 726 -EVAAEALAEDIILPLTRVLREGTLEGKRNAARALAQLLKHFPVDDVLKDSVQCRGTVLALVDLLNSTDLDSSATSEALE 804 (2102)
T ss_pred -hHHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHhCCChhHHHHHHHHHhCcHHHHHHHHhcCCcchhhHHHHHH
Confidence 567788899999999999999999999999999999976654322 22222 3678999999988887776 888
Q ss_pred HHHHHhccccCCCC
Q 001833 994 VLAHLNVLQDQSSY 1007 (1008)
Q Consensus 994 ~L~~L~~~~~~s~~ 1007 (1008)
+|+.|-+.-..++|
T Consensus 805 ~l~~l~~~~~~~~~ 818 (2102)
T PLN03200 805 ALALLARTKGGANF 818 (2102)
T ss_pred HHHHHHhhcccCCC
Confidence 89888886544443
No 3
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.7e-39 Score=358.31 Aligned_cols=410 Identities=20% Similarity=0.307 Sum_probs=358.2
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHhhcCCc--ccHHHHHhcCcHHHHHHHHhc-CCHHHHHHHHHHHHHHcCCh-hhHHH
Q 001833 463 ILLLVTMASSDDNQASRDAQELLENLSFSD--DNVVQMAKANYFKHLLQRLSA-GPESVKMRMATTLAEMELTD-HHKAS 538 (1008)
Q Consensus 463 i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~~--~n~~~i~~~g~v~~Lv~~L~~-~~~~~~~~aa~~L~~Ls~~~-~~k~~ 538 (1008)
.+.++..+.++++..+..+...+..+-..+ .....+...|.|+.+++.|.. .++.++..|+|+|.+++... +.-..
T Consensus 68 ~~~~~~~~~S~~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~ 147 (514)
T KOG0166|consen 68 LELMLAALYSDDPQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKV 147 (514)
T ss_pred hHHHHHHHhCCCHHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccc
Confidence 566777888999998999999999986433 446677778999999999974 46899999999999997655 55567
Q ss_pred HhhcCcHHHHHHHhccCCHHHHHHHHHHHHHhhC-CCchhHHHHhcCChHHHHHHhcccCCCCcchHHHHHHHHHHHhcc
Q 001833 539 LLEGNVLGPLLHLVSRGDIQMKKVAVKALRNLSS-VPQNGLQMIKEGAVGPLVDLLLHHSSSSSSLREETATAIMHLAVS 617 (1008)
Q Consensus 539 i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~-~~~~~~~i~~~G~v~~Ll~ll~~~~~~~~~~~~~a~~~L~nLa~~ 617 (1008)
++++|++|.|+.++.+++..+++.|+|||+|++. .+..|..+++.|++++|+.++..... ..+.+++.|+|.|||.+
T Consensus 148 vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~--~~~lRn~tW~LsNlcrg 225 (514)
T KOG0166|consen 148 VVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDK--LSMLRNATWTLSNLCRG 225 (514)
T ss_pred cccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccc--hHHHHHHHHHHHHHHcC
Confidence 8899999999999999999999999999999995 66788899999999999999987652 24677777777777764
Q ss_pred ccccccCCcccccccchhHHHHHHHhhccCChHHHHHHHHHHHHhccCCChhhHHHHhhhcCChHHHHHhhccCChhHHH
Q 001833 618 TMYQESSQTPVTLLESDKEIFMLFSLINLTGPNVQQRILQTFNALCRSPSAGNIKTTLTQCSAIPVLVQLCEHDNENVRA 697 (1008)
Q Consensus 618 ~~~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~aL~~L~~~~~~~~~~~~i~e~~~i~~Lv~ll~~~~~~v~~ 697 (1008)
.... .-.+.+. .++|.|..++++.|+++..
T Consensus 226 k~P~------------------------------------------------P~~~~v~--~iLp~L~~ll~~~D~~Vl~ 255 (514)
T KOG0166|consen 226 KNPS------------------------------------------------PPFDVVA--PILPALLRLLHSTDEEVLT 255 (514)
T ss_pred CCCC------------------------------------------------CcHHHHH--HHHHHHHHHHhcCCHHHHH
Confidence 4311 1111122 3689999999999999999
Q ss_pred HHHHHHHHhccCCChhHHHhhhcccchHHHHHHhcCCCCHHHHHHHHHHHhcCCC-ChhhHHHHHhcCCHHHHHHHhhCC
Q 001833 698 NAVKLFCCLVDDGDEAIIREHVGQKCLETLVTIIQSSHNEEEIASAMGILSKLPE-VPQFTQWLLDAGALPIVLNFLKNG 776 (1008)
Q Consensus 698 ~a~~~L~~Ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~v~~~a~~~L~nL~~-~~~~~~~l~~~g~l~~Lv~lL~~~ 776 (1008)
.|||++++|+ +++++.++.+++.|+++.|+.+|.+.+ ..++.+|+++++|++. ++.+++.+++.|+++.|..++...
T Consensus 256 Da~WAlsyLs-dg~ne~iq~vi~~gvv~~LV~lL~~~~-~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s 333 (514)
T KOG0166|consen 256 DACWALSYLT-DGSNEKIQMVIDAGVVPRLVDLLGHSS-PKVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSS 333 (514)
T ss_pred HHHHHHHHHh-cCChHHHHHHHHccchHHHHHHHcCCC-cccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccC
Confidence 9999999999 999999999999999999999999954 4688999999999988 999999999999999999999952
Q ss_pred CCCCCchhhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHHHhhcCChHHHHHHHHHHhhhhhcCCCCCCCCCCCCc
Q 001833 777 RQNDPNRFQVVENAVGALRRFTAPTNLEWQKRAAEAGVIPKLVQLLEYGTTLTKEHAATSLARFSKNSLGLSRPIPKRKG 856 (1008)
Q Consensus 777 ~~~~~~~~~v~~~a~~aL~~L~~~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~v~~~Aa~aL~nLs~~~~~l~~~~~~~~g 856 (1008)
+...++++|||+++|++.+ +++..+.++++|++|.|+.+|.+++.++|++|+|+++|++ ++|
T Consensus 334 -----~~~~ikkEAcW~iSNItAG-~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAawaIsN~t------------s~g 395 (514)
T KOG0166|consen 334 -----PKESIKKEACWTISNITAG-NQEQIQAVIDANLIPVLINLLQTAEFDIRKEAAWAISNLT------------SSG 395 (514)
T ss_pred -----cchhHHHHHHHHHHHhhcC-CHHHHHHHHHcccHHHHHHHHhccchHHHHHHHHHHHhhc------------ccC
Confidence 5666999999999999998 8999999999999999999999999999999999999998 444
Q ss_pred ccccCCCCCCcccccCcccCcccchhHhhccchHHHHHhhcCCChhhhHHHHHHHHhhh-ccccc-----chhhHHHHhc
Q 001833 857 FWCFSPPPEIGCQVHGGLCGIESSFCLLEANAVRPLVRVLEDPDHGACEASLDALVTLI-EGERL-----QNGSKVLEDA 930 (1008)
Q Consensus 857 ~~~~~~~~~~~c~vh~~~c~~~~~~~l~~~g~i~~Lv~lL~~~d~~v~~~al~aL~~L~-~~~~~-----~~~~~~i~~~ 930 (1008)
++++..+|++.|+|+||+++|.-.|..+...++.+|.+++ .++.. +.....|.++
T Consensus 396 -------------------~~~qi~yLv~~giI~plcdlL~~~D~~ii~v~Ld~l~nil~~~e~~~~~~~n~~~~~IEe~ 456 (514)
T KOG0166|consen 396 -------------------TPEQIKYLVEQGIIKPLCDLLTCPDVKIILVALDGLENILKVGEAEKNRGTNPLAIMIEEA 456 (514)
T ss_pred -------------------CHHHHHHHHHcCCchhhhhcccCCChHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHc
Confidence 7899999999999999999999889999999999999999 44332 5678899999
Q ss_pred CchHHHHHHhcCCChHHHHHHHHHHHHHhcChH
Q 001833 931 NAIDRMVRFLSSPSPKLQEKALDSVERIFRLPE 963 (1008)
Q Consensus 931 ~~i~~l~~ll~~~~~~l~~~a~~~L~~l~~~~~ 963 (1008)
||+++|..+..+.|.+++++|..++++||..++
T Consensus 457 ggldkiE~LQ~hen~~Iy~~A~~II~~yf~~e~ 489 (514)
T KOG0166|consen 457 GGLDKIENLQSHENEEIYKKAYKIIDTYFSEED 489 (514)
T ss_pred cChhHHHHhhccccHHHHHHHHHHHHHhcCCCc
Confidence 999999999999999999999999999998763
No 4
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=100.00 E-value=5.5e-40 Score=332.38 Aligned_cols=419 Identities=19% Similarity=0.244 Sum_probs=358.4
Q ss_pred hHHHHHHHhcCCChHHHHHHHHHHHhhcC--CcccHHHHHhcCcHHHHHHHHhcC-CHHHHHHHHHHHHHHcCChhhHH-
Q 001833 462 CILLLVTMASSDDNQASRDAQELLENLSF--SDDNVVQMAKANYFKHLLQRLSAG-PESVKMRMATTLAEMELTDHHKA- 537 (1008)
Q Consensus 462 ~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~--~~~n~~~i~~~g~v~~Lv~~L~~~-~~~~~~~aa~~L~~Ls~~~~~k~- 537 (1008)
-+|.|..-|.++|.+.+..|+.-+..+-+ +.+....++.+|.||.+++++++. ..-.+..|+|+|.+++.......
T Consensus 72 elp~lt~~l~SdDie~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTk 151 (526)
T COG5064 72 ELPQLTQQLFSDDIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTK 151 (526)
T ss_pred hhHHHHHHHhhhHHHHHHHHHHHHHHHhccccCCCchhHHhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccceE
Confidence 45788888888998888888887777743 445688899999999999999654 44567899999999976554443
Q ss_pred HHhhcCcHHHHHHHhccCCHHHHHHHHHHHHHhhC-CCchhHHHHhcCChHHHHHHhcccCCCCcchHHHHHHHHHHHhc
Q 001833 538 SLLEGNVLGPLLHLVSRGDIQMKKVAVKALRNLSS-VPQNGLQMIKEGAVGPLVDLLLHHSSSSSSLREETATAIMHLAV 616 (1008)
Q Consensus 538 ~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~-~~~~~~~i~~~G~v~~Ll~ll~~~~~~~~~~~~~a~~~L~nLa~ 616 (1008)
.+++.|++|.++++|.+++..+++.+.|||+|++. ++..|+.+.+.|++.+++.++.+...+ ..+.+++.|+|.||+.
T Consensus 152 vVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~-ismlRn~TWtLSNlcR 230 (526)
T COG5064 152 VVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIH-ISMLRNATWTLSNLCR 230 (526)
T ss_pred EEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccch-HHHHHHhHHHHHHhhC
Confidence 46789999999999999999999999999999996 566788889999999999999865532 4567777787777776
Q ss_pred cccccccCCcccccccchhHHHHHHHhhccCChHHHHHHHHHHHHhccCCChhhHHHHhhhcCChHHHHHhhccCChhHH
Q 001833 617 STMYQESSQTPVTLLESDKEIFMLFSLINLTGPNVQQRILQTFNALCRSPSAGNIKTTLTQCSAIPVLVQLCEHDNENVR 696 (1008)
Q Consensus 617 ~~~~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~aL~~L~~~~~~~~~~~~i~e~~~i~~Lv~ll~~~~~~v~ 696 (1008)
+.... ..-..+. .++|.|..|+.+.++++.
T Consensus 231 GknP~------------------------------------------------P~w~~is--qalpiL~KLiys~D~evl 260 (526)
T COG5064 231 GKNPP------------------------------------------------PDWSNIS--QALPILAKLIYSRDPEVL 260 (526)
T ss_pred CCCCC------------------------------------------------CchHHHH--HHHHHHHHHHhhcCHHHH
Confidence 43221 1111222 258999999999999999
Q ss_pred HHHHHHHHHhccCCChhHHHhhhcccchHHHHHHhcCCCCHHHHHHHHHHHhcCCC-ChhhHHHHHhcCCHHHHHHHhhC
Q 001833 697 ANAVKLFCCLVDDGDEAIIREHVGQKCLETLVTIIQSSHNEEEIASAMGILSKLPE-VPQFTQWLLDAGALPIVLNFLKN 775 (1008)
Q Consensus 697 ~~a~~~L~~Ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~v~~~a~~~L~nL~~-~~~~~~~l~~~g~l~~Lv~lL~~ 775 (1008)
..|||++++|+ +++.+.++.+++.|..++|+++|.+. +..++..|++.++|++. ++.+++.+++.|+++.+..+|.+
T Consensus 261 vDA~WAiSYls-Dg~~E~i~avld~g~~~RLvElLs~~-sa~iqtPalR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~ 338 (526)
T COG5064 261 VDACWAISYLS-DGPNEKIQAVLDVGIPGRLVELLSHE-SAKIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSS 338 (526)
T ss_pred HHHHHHHHHhc-cCcHHHHHHHHhcCCcHHHHHHhcCc-cccccCHHHHhhcCeeecCccceehheecccHHHHHHHhcC
Confidence 99999999999 99999999999999999999999995 45789999999999998 99999999999999999999999
Q ss_pred CCCCCCchhhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHHHhhcCChHHHHHHHHHHhhhhhcCCCCCCCCCCCC
Q 001833 776 GRQNDPNRFQVVENAVGALRRFTAPTNLEWQKRAAEAGVIPKLVQLLEYGTTLTKEHAATSLARFSKNSLGLSRPIPKRK 855 (1008)
Q Consensus 776 ~~~~~~~~~~v~~~a~~aL~~L~~~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~v~~~Aa~aL~nLs~~~~~l~~~~~~~~ 855 (1008)
+...+++++||+++|++.+ +.+..+.+++.+++|.|+.+|...+-.+++.||||+.|++..
T Consensus 339 ------~ke~irKEaCWTiSNITAG-nteqiqavid~nliPpLi~lls~ae~k~kKEACWAisNatsg------------ 399 (526)
T COG5064 339 ------PKENIRKEACWTISNITAG-NTEQIQAVIDANLIPPLIHLLSSAEYKIKKEACWAISNATSG------------ 399 (526)
T ss_pred ------hhhhhhhhhheeecccccC-CHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhcc------------
Confidence 6789999999999999999 899999999999999999999999999999999999999832
Q ss_pred cccccCCCCCCcccccCcccCcccchhHhhccchHHHHHhhcCCChhhhHHHHHHHHhhh-cccc--------cchhhHH
Q 001833 856 GFWCFSPPPEIGCQVHGGLCGIESSFCLLEANAVRPLVRVLEDPDHGACEASLDALVTLI-EGER--------LQNGSKV 926 (1008)
Q Consensus 856 g~~~~~~~~~~~c~vh~~~c~~~~~~~l~~~g~i~~Lv~lL~~~d~~v~~~al~aL~~L~-~~~~--------~~~~~~~ 926 (1008)
|.-.++...+|++.|+|+||+++|.-.|..+.+.+++++.|++ .++. .+.+..+
T Consensus 400 -----------------g~~~PD~iryLv~qG~IkpLc~~L~~~dNkiiev~LD~~eniLk~Ge~d~~~~~~nin~ya~~ 462 (526)
T COG5064 400 -----------------GLNRPDIIRYLVSQGFIKPLCDLLDVVDNKIIEVALDAIENILKVGEQDRLRYGKNINIYAVY 462 (526)
T ss_pred -----------------ccCCchHHHHHHHccchhHHHHHHhccCccchhhhHHHHHHHHhhhhHHHHhccCCccHHHHH
Confidence 2335678999999999999999999888888889999999999 5433 2356778
Q ss_pred HHhcCchHHHHHHhcCCChHHHHHHHHHHHHHhcChHHHHHhc
Q 001833 927 LEDANAIDRMVRFLSSPSPKLQEKALDSVERIFRLPEFKQKYG 969 (1008)
Q Consensus 927 i~~~~~i~~l~~ll~~~~~~l~~~a~~~L~~l~~~~~~~~~~~ 969 (1008)
+.++||++.|..+..+.|..+..+|..+++++|..++..+.++
T Consensus 463 vE~Aggmd~I~~~Q~s~n~~iy~KAYsIIe~fFgeeD~vd~la 505 (526)
T COG5064 463 VEKAGGMDAIHGLQDSVNRTIYDKAYSIIEKFFGEEDAVDELA 505 (526)
T ss_pred HHhcccHHHHHHhhhccccHHHHHHHHHHHHHcccchhhhhcC
Confidence 8889999999999999999999999999999999887665543
No 5
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.1e-32 Score=281.86 Aligned_cols=399 Identities=19% Similarity=0.248 Sum_probs=350.5
Q ss_pred chHHHHHHHcCCCHHHHHHHHHHHHHhccCChhhHHHhhccCCcHHHHHHH-hccChhHHHHHHHHHHHhccCchhhHHh
Q 001833 378 YIPKLIYLLGSKNRDVRNRALIILHILVKDSNDTKERLANGDDAVESIVRS-LGRRIEERKLAVALLLELSTCNTLRDQI 456 (1008)
Q Consensus 378 ~i~~L~~lL~s~~~~~~~~Al~~L~~Ls~~~~~~k~~i~~~~g~i~~Lv~~-L~~~~~~~~~A~~~L~~Ls~~~~~~~~i 456 (1008)
....+.-++.+.++.+|..|-.++.+|+... +||..|++ .++++.|+.- ...+.+.+.+|+.++++|+.-+++|..|
T Consensus 86 s~epvl~llqs~d~~Iq~aa~~alGnlAVn~-enk~liv~-l~Gl~~Li~qmmtd~vevqcnaVgCitnLaT~d~nk~ki 163 (550)
T KOG4224|consen 86 SNEPVLALLQSCDKCIQCAAGEALGNLAVNM-ENKGLIVS-LLGLDLLILQMMTDGVEVQCNAVGCITNLATFDSNKVKI 163 (550)
T ss_pred hhhHHHHHHhCcchhhhhhhhhhhccceecc-CCceEEEe-ccChHHHHHHhcCCCcEEEeeehhhhhhhhccccchhhh
Confidence 3556677889999999999999999999988 89999999 7888876655 4667889999999999999999999999
Q ss_pred hcccchHHHHHHHhcCCChHHHHHHHHHHHhhcCCcccHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHHcCChhhH
Q 001833 457 GDVQGCILLLVTMASSDDNQASRDAQELLENLSFSDDNVVQMAKANYFKHLLQRLSAGPESVKMRMATTLAEMELTDHHK 536 (1008)
Q Consensus 457 ~~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~~~n~~~i~~~g~v~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~~~~k 536 (1008)
+. .|++.+|..+-++.|..++.++..+|.||....+|++.++.+|++|.|+.+++.++.+++..+..++.+++....+|
T Consensus 164 A~-sGaL~pltrLakskdirvqrnatgaLlnmThs~EnRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaVd~~~R 242 (550)
T KOG4224|consen 164 AR-SGALEPLTRLAKSKDIRVQRNATGALLNMTHSRENRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDRRAR 242 (550)
T ss_pred hh-ccchhhhHhhcccchhhHHHHHHHHHHHhhhhhhhhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhhhHHHH
Confidence 98 89999999988899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcC--cHHHHHHHhccCCHHHHHHHHHHHHHhhCCCchhHHHHhcCChHHHHHHhcccCCCCcchHHHHHHHHHHH
Q 001833 537 ASLLEGN--VLGPLLHLVSRGDIQMKKVAVKALRNLSSVPQNGLQMIKEGAVGPLVDLLLHHSSSSSSLREETATAIMHL 614 (1008)
Q Consensus 537 ~~i~~~g--~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~~~~~~~i~~~G~v~~Ll~ll~~~~~~~~~~~~~a~~~L~nL 614 (1008)
..+.+.| .+|.||+++.++++++|-.|..||+||+...+....++++|.+|.++++++++.. ...-..+.++.|+
T Consensus 243 k~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~Yq~eiv~ag~lP~lv~Llqs~~~---plilasVaCIrni 319 (550)
T KOG4224|consen 243 KILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDTEYQREIVEAGSLPLLVELLQSPMG---PLILASVACIRNI 319 (550)
T ss_pred HHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccchhhhHHHhcCCchHHHHHHhCcch---hHHHHHHHHHhhc
Confidence 9999888 9999999999999999999999999999999999999999999999999986542 2344455556666
Q ss_pred hccccccccCCcccccccchhHHHHHHHhhccCChHHHHHHHHHHHHhccCCChhhHHHHhhhcCChHHHHHhhccCC-h
Q 001833 615 AVSTMYQESSQTPVTLLESDKEIFMLFSLINLTGPNVQQRILQTFNALCRSPSAGNIKTTLTQCSAIPVLVQLCEHDN-E 693 (1008)
Q Consensus 615 a~~~~~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~aL~~L~~~~~~~~~~~~i~e~~~i~~Lv~ll~~~~-~ 693 (1008)
+-.+ -+. ..+.+.|++.+|+++|+.++ +
T Consensus 320 sihp------------------------------------------------lNe---~lI~dagfl~pLVrlL~~~dnE 348 (550)
T KOG4224|consen 320 SIHP------------------------------------------------LNE---VLIADAGFLRPLVRLLRAGDNE 348 (550)
T ss_pred cccc------------------------------------------------Ccc---cceecccchhHHHHHHhcCCch
Confidence 5422 221 23567899999999999885 5
Q ss_pred hHHHHHHHHHHHhccCCChhHHHhhhcccchHHHHHHhcCCCCHHHHHHHHHHHhcCCCChhhHHHHHhcCCHHHHHHHh
Q 001833 694 NVRANAVKLFCCLVDDGDEAIIREHVGQKCLETLVTIIQSSHNEEEIASAMGILSKLPEVPQFTQWLLDAGALPIVLNFL 773 (1008)
Q Consensus 694 ~v~~~a~~~L~~Ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~v~~~a~~~L~nL~~~~~~~~~l~~~g~l~~Lv~lL 773 (1008)
+++-.|...|++|+ ....++...+.++|+++.|+.++.+++ .+++....++++.|+.++..+..+.+.|.++.|+..+
T Consensus 349 eiqchAvstLrnLA-asse~n~~~i~esgAi~kl~eL~lD~p-vsvqseisac~a~Lal~d~~k~~lld~gi~~iLIp~t 426 (550)
T KOG4224|consen 349 EIQCHAVSTLRNLA-ASSEHNVSVIRESGAIPKLIELLLDGP-VSVQSEISACIAQLALNDNDKEALLDSGIIPILIPWT 426 (550)
T ss_pred hhhhhHHHHHHHHh-hhhhhhhHHHhhcCchHHHHHHHhcCC-hhHHHHHHHHHHHHHhccccHHHHhhcCCcceeeccc
Confidence 69999999999998 556778888999999999999999954 4788999999999999999999999999999999999
Q ss_pred hCCCCCCCchhhHHHHHHHHHHHhcCCCCHHHHHHHHH------cCChHHHHHHhhcCChHHHHHHHHHHhhhhhc
Q 001833 774 KNGRQNDPNRFQVVENAVGALRRFTAPTNLEWQKRAAE------AGVIPKLVQLLEYGTTLTKEHAATSLARFSKN 843 (1008)
Q Consensus 774 ~~~~~~~~~~~~v~~~a~~aL~~L~~~~~~~~~~~l~~------~g~l~~Lv~lL~~~~~~v~~~Aa~aL~nLs~~ 843 (1008)
.+ .+.+++.+++.+|.||+.. .+.-..+++ .|+-..|+..+.+....++..+.|++.+|..+
T Consensus 427 ~s------~s~Ev~gNaAaAL~Nlss~--v~~YarviEawd~P~~gi~g~L~Rfl~S~~~tf~hia~wTI~qLle~ 494 (550)
T KOG4224|consen 427 GS------ESEEVRGNAAAALINLSSD--VEHYARVIEAWDHPVQGIQGRLARFLASHELTFRHIARWTIQQLLED 494 (550)
T ss_pred Cc------cchhhcccHHHHHHhhhhh--hHHHHHHHHHhcCcchhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHh
Confidence 98 7899999999999999994 444444444 36667789999998889999999999999853
No 6
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.9e-31 Score=269.87 Aligned_cols=405 Identities=22% Similarity=0.296 Sum_probs=351.0
Q ss_pred cchHHHHHHHhcCCChHHHHHHHHHHHhhcCCcccHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHHcCChhhHHHH
Q 001833 460 QGCILLLVTMASSDDNQASRDAQELLENLSFSDDNVVQMAKANYFKHLLQRLSAGPESVKMRMATTLAEMELTDHHKASL 539 (1008)
Q Consensus 460 ~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~~~n~~~i~~~g~v~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~~~~k~~i 539 (1008)
...+.+...++++.++..+..+..++.|++.+.+|+..+++.+++++|+.-+..+..+++.++...+++|+..+++|..|
T Consensus 84 res~epvl~llqs~d~~Iq~aa~~alGnlAVn~enk~liv~l~Gl~~Li~qmmtd~vevqcnaVgCitnLaT~d~nk~ki 163 (550)
T KOG4224|consen 84 RESNEPVLALLQSCDKCIQCAAGEALGNLAVNMENKGLIVSLLGLDLLILQMMTDGVEVQCNAVGCITNLATFDSNKVKI 163 (550)
T ss_pred hhhhhHHHHHHhCcchhhhhhhhhhhccceeccCCceEEEeccChHHHHHHhcCCCcEEEeeehhhhhhhhccccchhhh
Confidence 34567778888999999999999999999999999999999999999988877778899999999999999999999999
Q ss_pred hhcCcHHHHHHHhccCCHHHHHHHHHHHHHhhCCCchhHHHHhcCChHHHHHHhcccCCCCcchHHHHHHHHHHHhcccc
Q 001833 540 LEGNVLGPLLHLVSRGDIQMKKVAVKALRNLSSVPQNGLQMIKEGAVGPLVDLLLHHSSSSSSLREETATAIMHLAVSTM 619 (1008)
Q Consensus 540 ~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~~~~~~~i~~~G~v~~Ll~ll~~~~~~~~~~~~~a~~~L~nLa~~~~ 619 (1008)
...|++.++.++-++.+.+++.++..+|.|+....+||..++.+|++|.|++++.+++ +.+++.+..++.|++-+
T Consensus 164 A~sGaL~pltrLakskdirvqrnatgaLlnmThs~EnRr~LV~aG~lpvLVsll~s~d---~dvqyycttaisnIaVd-- 238 (550)
T KOG4224|consen 164 ARSGALEPLTRLAKSKDIRVQRNATGALLNMTHSRENRRVLVHAGGLPVLVSLLKSGD---LDVQYYCTTAISNIAVD-- 238 (550)
T ss_pred hhccchhhhHhhcccchhhHHHHHHHHHHHhhhhhhhhhhhhccCCchhhhhhhccCC---hhHHHHHHHHhhhhhhh--
Confidence 9999999999988899999999999999999999999999999999999999999876 56888888888888642
Q ss_pred ccccCCcccccccchhHHHHHHHhhccCChHHHHHHHHHHHHhccCCChhhHHHHhhhcC--ChHHHHHhhccCChhHHH
Q 001833 620 YQESSQTPVTLLESDKEIFMLFSLINLTGPNVQQRILQTFNALCRSPSAGNIKTTLTQCS--AIPVLVQLCEHDNENVRA 697 (1008)
Q Consensus 620 ~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~aL~~L~~~~~~~~~~~~i~e~~--~i~~Lv~ll~~~~~~v~~ 697 (1008)
...|+.+.+.+ .++.|++++.++++.++-
T Consensus 239 -------------------------------------------------~~~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkc 269 (550)
T KOG4224|consen 239 -------------------------------------------------RRARKILAQAEPKLVPALVDLMDDGSDKVKC 269 (550)
T ss_pred -------------------------------------------------HHHHHHHHhcccchHHHHHHHHhCCChHHHH
Confidence 22344455555 799999999999999999
Q ss_pred HHHHHHHHhccCCChhHHHhhhcccchHHHHHHhcCCCCHHHHHHHHHHHhcCCCChhhHHHHHhcCCHHHHHHHhhCCC
Q 001833 698 NAVKLFCCLVDDGDEAIIREHVGQKCLETLVTIIQSSHNEEEIASAMGILSKLPEVPQFTQWLLDAGALPIVLNFLKNGR 777 (1008)
Q Consensus 698 ~a~~~L~~Ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~v~~~a~~~L~nL~~~~~~~~~l~~~g~l~~Lv~lL~~~~ 777 (1008)
.|..+|.+|+. ..+...++.+.|.+|.++++|+++.- ....+.+.++.|++-.|-+...+.+.|++.+|+.+|.-+
T Consensus 270 qA~lALrnlas--dt~Yq~eiv~ag~lP~lv~Llqs~~~-plilasVaCIrnisihplNe~lI~dagfl~pLVrlL~~~- 345 (550)
T KOG4224|consen 270 QAGLALRNLAS--DTEYQREIVEAGSLPLLVELLQSPMG-PLILASVACIRNISIHPLNEVLIADAGFLRPLVRLLRAG- 345 (550)
T ss_pred HHHHHHhhhcc--cchhhhHHHhcCCchHHHHHHhCcch-hHHHHHHHHHhhcccccCcccceecccchhHHHHHHhcC-
Confidence 99999999973 45677888999999999999988644 455677889999999888888899999999999999985
Q ss_pred CCCCchhhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHHHhhcCChHHHHHHHHHHhhhhhcCCCCCCCCCCCCcc
Q 001833 778 QNDPNRFQVVENAVGALRRFTAPTNLEWQKRAAEAGVIPKLVQLLEYGTTLTKEHAATSLARFSKNSLGLSRPIPKRKGF 857 (1008)
Q Consensus 778 ~~~~~~~~v~~~a~~aL~~L~~~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~v~~~Aa~aL~nLs~~~~~l~~~~~~~~g~ 857 (1008)
.+++++-.|..+|+||+.. .+..+..+.+.|++|.+..++.++...+|.....++..|+.+.
T Consensus 346 ----dnEeiqchAvstLrnLAas-se~n~~~i~esgAi~kl~eL~lD~pvsvqseisac~a~Lal~d------------- 407 (550)
T KOG4224|consen 346 ----DNEEIQCHAVSTLRNLAAS-SEHNVSVIRESGAIPKLIELLLDGPVSVQSEISACIAQLALND------------- 407 (550)
T ss_pred ----CchhhhhhHHHHHHHHhhh-hhhhhHHHhhcCchHHHHHHHhcCChhHHHHHHHHHHHHHhcc-------------
Confidence 4677999999999999996 6888889999999999999999999999999999999998643
Q ss_pred cccCCCCCCcccccCcccCcccchhHhhccchHHHHHhhcCCChhhhHHHHHHHHhhh-cccccchhhHHHHh----cCc
Q 001833 858 WCFSPPPEIGCQVHGGLCGIESSFCLLEANAVRPLVRVLEDPDHGACEASLDALVTLI-EGERLQNGSKVLED----ANA 932 (1008)
Q Consensus 858 ~~~~~~~~~~c~vh~~~c~~~~~~~l~~~g~i~~Lv~lL~~~d~~v~~~al~aL~~L~-~~~~~~~~~~~i~~----~~~ 932 (1008)
+...++.+.|+++.|+.++.+.+.+++.+|..||.|+. +- +.+...+.. .+|
T Consensus 408 --------------------~~k~~lld~gi~~iLIp~t~s~s~Ev~gNaAaAL~Nlss~v---~~YarviEawd~P~~g 464 (550)
T KOG4224|consen 408 --------------------NDKEALLDSGIIPILIPWTGSESEEVRGNAAAALINLSSDV---EHYARVIEAWDHPVQG 464 (550)
T ss_pred --------------------ccHHHHhhcCCcceeecccCccchhhcccHHHHHHhhhhhh---HHHHHHHHHhcCcchh
Confidence 34556899999999999999999999999999999999 33 234333321 245
Q ss_pred hH-HHHHHhcCCChHHHHHHHHHHHHHhcChH
Q 001833 933 ID-RMVRFLSSPSPKLQEKALDSVERIFRLPE 963 (1008)
Q Consensus 933 i~-~l~~ll~~~~~~l~~~a~~~L~~l~~~~~ 963 (1008)
++ .+.+++.+....++.-+.|.+..++..-+
T Consensus 465 i~g~L~Rfl~S~~~tf~hia~wTI~qLle~h~ 496 (550)
T KOG4224|consen 465 IQGRLARFLASHELTFRHIARWTIQQLLEDHD 496 (550)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHhCC
Confidence 54 58888888888999999999988865433
No 7
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.98 E-value=2.4e-30 Score=285.87 Aligned_cols=399 Identities=21% Similarity=0.302 Sum_probs=339.5
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHhhCCCch--hHHHHhcCChHHHHHHhcccCCCCcchHHHHHHHHHHHhccccccc
Q 001833 545 LGPLLHLVSRGDIQMKKVAVKALRNLSSVPQN--GLQMIKEGAVGPLVDLLLHHSSSSSSLREETATAIMHLAVSTMYQE 622 (1008)
Q Consensus 545 i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~~~~--~~~i~~~G~v~~Ll~ll~~~~~~~~~~~~~a~~~L~nLa~~~~~~~ 622 (1008)
.+.++..+.+.++..+..+...++.+-+...+ -..++..|++|.++..+..+. .+.++.+|+|+|.|++++...+.
T Consensus 68 ~~~~~~~~~S~~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~--~~~lq~eAAWaLTnIAsgtse~T 145 (514)
T KOG0166|consen 68 LELMLAALYSDDPQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDD--NPTLQFEAAWALTNIASGTSEQT 145 (514)
T ss_pred hHHHHHHHhCCCHHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCC--ChhHHHHHHHHHHHHhcCchhhc
Confidence 67778888889988899999999998754433 466677799999999998544 26899999999999999887766
Q ss_pred cCCcccccccchhHHHHHHHhhccCChHHHHHHHHHHHHhccCCChhhHHHHhhhcCChHHHHHhhccCCh-hHHHHHHH
Q 001833 623 SSQTPVTLLESDKEIFMLFSLINLTGPNVQQRILQTFNALCRSPSAGNIKTTLTQCSAIPVLVQLCEHDNE-NVRANAVK 701 (1008)
Q Consensus 623 ~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~aL~~L~~~~~~~~~~~~i~e~~~i~~Lv~ll~~~~~-~v~~~a~~ 701 (1008)
. .+...|+++.++.++.+++.++++.++|+|.|++.+ ++.+|+.+..+|+++.|+.++...+. .....+.|
T Consensus 146 ~------~vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagd--s~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW 217 (514)
T KOG0166|consen 146 K------VVVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGD--SPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATW 217 (514)
T ss_pred c------ccccCCchHHHHHHhcCCcHHHHHHHHHHHhccccC--ChHHHHHHHhhcchHHHHHHhccccchHHHHHHHH
Confidence 5 778899999999999999999999999999999985 78999999999999999999998875 78889999
Q ss_pred HHHHhccCCCh-hHHHhhhcccchHHHHHHhcCCCCHHHHHHHHHHHhcCCC-ChhhHHHHHhcCCHHHHHHHhhCCCCC
Q 001833 702 LFCCLVDDGDE-AIIREHVGQKCLETLVTIIQSSHNEEEIASAMGILSKLPE-VPQFTQWLLDAGALPIVLNFLKNGRQN 779 (1008)
Q Consensus 702 ~L~~Ls~~~~~-~~~~~~~~~~~i~~Lv~lL~~~~~~~v~~~a~~~L~nL~~-~~~~~~~l~~~g~l~~Lv~lL~~~~~~ 779 (1008)
+|.||++...+ ..... -...++.|..++.+ .+.++...|+++|++|+. ..+..+.+++.|+++.|+.+|.+
T Consensus 218 ~LsNlcrgk~P~P~~~~--v~~iLp~L~~ll~~-~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~---- 290 (514)
T KOG0166|consen 218 TLSNLCRGKNPSPPFDV--VAPILPALLRLLHS-TDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGH---- 290 (514)
T ss_pred HHHHHHcCCCCCCcHHH--HHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcC----
Confidence 99999944321 11111 23678999999998 677899999999999997 88999999999999999999999
Q ss_pred CCchhhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHHHhh-cCChHHHHHHHHHHhhhhhcCCCCCCCCCCCCccc
Q 001833 780 DPNRFQVVENAVGALRRFTAPTNLEWQKRAAEAGVIPKLVQLLE-YGTTLTKEHAATSLARFSKNSLGLSRPIPKRKGFW 858 (1008)
Q Consensus 780 ~~~~~~v~~~a~~aL~~L~~~~~~~~~~~l~~~g~l~~Lv~lL~-~~~~~v~~~Aa~aL~nLs~~~~~l~~~~~~~~g~~ 858 (1008)
.+..++-.|+++++|++.+ ++...+.+++.|++|.|..++. +....++++|||+|+|++. |
T Consensus 291 --~~~~v~~PaLRaiGNIvtG-~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItA-------------G-- 352 (514)
T KOG0166|consen 291 --SSPKVVTPALRAIGNIVTG-SDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITA-------------G-- 352 (514)
T ss_pred --CCcccccHHHhhccceeec-cHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhc-------------C--
Confidence 5677889999999999998 8889999999999999999999 4555799999999999983 2
Q ss_pred ccCCCCCCcccccCcccCcccchhHhhccchHHHHHhhcCCChhhhHHHHHHHHhhh-cccccchhhHHHHhcCchHHHH
Q 001833 859 CFSPPPEIGCQVHGGLCGIESSFCLLEANAVRPLVRVLEDPDHGACEASLDALVTLI-EGERLQNGSKVLEDANAIDRMV 937 (1008)
Q Consensus 859 ~~~~~~~~~c~vh~~~c~~~~~~~l~~~g~i~~Lv~lL~~~d~~v~~~al~aL~~L~-~~~~~~~~~~~i~~~~~i~~l~ 937 (1008)
+.+++.+++++|.++.|+.+|+..+..++..|++|++|++ .+. .+-..++.+.|.|++++
T Consensus 353 -----------------~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAawaIsN~ts~g~--~~qi~yLv~~giI~plc 413 (514)
T KOG0166|consen 353 -----------------NQEQIQAVIDANLIPVLINLLQTAEFDIRKEAAWAISNLTSSGT--PEQIKYLVEQGIIKPLC 413 (514)
T ss_pred -----------------CHHHHHHHHHcccHHHHHHHHhccchHHHHHHHHHHHhhcccCC--HHHHHHHHHcCCchhhh
Confidence 5778899999999999999999999999999999999999 443 46788999999999999
Q ss_pred HHhcCCChHHHHHHHHHHHHHhcChHHHHHh---------ccccCch-hhhhcccCCchhhHHHHHHHHH
Q 001833 938 RFLSSPSPKLQEKALDSVERIFRLPEFKQKY---------GKSAQMP-LVDLTQRGNSSMKSLSARVLAH 997 (1008)
Q Consensus 938 ~ll~~~~~~l~~~a~~~L~~l~~~~~~~~~~---------~~~~~~~-Lv~l~~~~~~~~~~~Aa~~L~~ 997 (1008)
+++.-.+.++...++..+++++...+..... -...+.. +-.+..|.+.++..+|-+++.+
T Consensus 414 dlL~~~D~~ii~v~Ld~l~nil~~~e~~~~~~~n~~~~~IEe~ggldkiE~LQ~hen~~Iy~~A~~II~~ 483 (514)
T KOG0166|consen 414 DLLTCPDVKIILVALDGLENILKVGEAEKNRGTNPLAIMIEEAGGLDKIENLQSHENEEIYKKAYKIIDT 483 (514)
T ss_pred hcccCCChHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHccChhHHHHhhccccHHHHHHHHHHHHH
Confidence 9999999999999999999998876643321 1222333 4445566777899888888764
No 8
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=99.98 E-value=4.9e-31 Score=267.58 Aligned_cols=402 Identities=18% Similarity=0.232 Sum_probs=338.4
Q ss_pred cHHHHHHHhccCCHHHHHHHHHHHHHhhC--CCchhHHHHhcCChHHHHHHhcccCCCCcchHHHHHHHHHHHhcccccc
Q 001833 544 VLGPLLHLVSRGDIQMKKVAVKALRNLSS--VPQNGLQMIKEGAVGPLVDLLLHHSSSSSSLREETATAIMHLAVSTMYQ 621 (1008)
Q Consensus 544 ~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~--~~~~~~~i~~~G~v~~Ll~ll~~~~~~~~~~~~~a~~~L~nLa~~~~~~ 621 (1008)
-+|.|..-|.+.+.+.+..|..-.+.+-+ +..--+.++++|++|.++++|..... .-++-+|+|+|.|++++...+
T Consensus 72 elp~lt~~l~SdDie~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~~~q~--~mlqfEAaWalTNiaSGtt~Q 149 (526)
T COG5064 72 ELPQLTQQLFSDDIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEIQR--DMLQFEAAWALTNIASGTTQQ 149 (526)
T ss_pred hhHHHHHHHhhhHHHHHHHHHHHHHHHhccccCCCchhHHhccccHHHHHHHHhcch--hHHHHHHHHHHhhhccCcccc
Confidence 34778888888888888888877777764 33445788999999999999975543 346789999999999987776
Q ss_pred ccCCcccccccchhHHHHHHHhhccCChHHHHHHHHHHHHhccCCChhhHHHHhhhcCChHHHHHhhccCCh--hHHHHH
Q 001833 622 ESSQTPVTLLESDKEIFMLFSLINLTGPNVQQRILQTFNALCRSPSAGNIKTTLTQCSAIPVLVQLCEHDNE--NVRANA 699 (1008)
Q Consensus 622 ~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~aL~~L~~~~~~~~~~~~i~e~~~i~~Lv~ll~~~~~--~v~~~a 699 (1008)
.. +....|+++.++.+|.++..++++.++|+|.|++.+ ++.+|+.+.++|++.+++.++.+... .+..++
T Consensus 150 Tk------vVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGD--S~~~RD~vL~~galeplL~ll~ss~~~ismlRn~ 221 (526)
T COG5064 150 TK------VVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGD--SEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNA 221 (526)
T ss_pred eE------EEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCC--chhHHHHHHhcCchHHHHHHHHhccchHHHHHHh
Confidence 65 788899999999999999999999999999999985 78899999999999999999988744 778899
Q ss_pred HHHHHHhccCCC-hhHHHhhhcccchHHHHHHhcCCCCHHHHHHHHHHHhcCCC-ChhhHHHHHhcCCHHHHHHHhhCCC
Q 001833 700 VKLFCCLVDDGD-EAIIREHVGQKCLETLVTIIQSSHNEEEIASAMGILSKLPE-VPQFTQWLLDAGALPIVLNFLKNGR 777 (1008)
Q Consensus 700 ~~~L~~Ls~~~~-~~~~~~~~~~~~i~~Lv~lL~~~~~~~v~~~a~~~L~nL~~-~~~~~~~l~~~g~l~~Lv~lL~~~~ 777 (1008)
.|.|+||++... +.....+ ...++.|..++.+ .++++...|+++++.|+. ..+..+.+++.|..+.|+.+|.+
T Consensus 222 TWtLSNlcRGknP~P~w~~i--sqalpiL~KLiys-~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~-- 296 (526)
T COG5064 222 TWTLSNLCRGKNPPPDWSNI--SQALPILAKLIYS-RDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSH-- 296 (526)
T ss_pred HHHHHHhhCCCCCCCchHHH--HHHHHHHHHHHhh-cCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcC--
Confidence 999999994322 1122222 2578899999988 577899999999999999 77888999999999999999999
Q ss_pred CCCCchhhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHHHhhcCChHHHHHHHHHHhhhhhcCCCCCCCCCCCCcc
Q 001833 778 QNDPNRFQVVENAVGALRRFTAPTNLEWQKRAAEAGVIPKLVQLLEYGTTLTKEHAATSLARFSKNSLGLSRPIPKRKGF 857 (1008)
Q Consensus 778 ~~~~~~~~v~~~a~~aL~~L~~~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~v~~~Aa~aL~nLs~~~~~l~~~~~~~~g~ 857 (1008)
++..++.-+++.++|+..+ +....+.++..|+++.+..+|.+....+|+.|||++.|++. |
T Consensus 297 ----~sa~iqtPalR~vGNIVTG-~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTiSNITA-------------G- 357 (526)
T COG5064 297 ----ESAKIQTPALRSVGNIVTG-SDDQTQVIINCGALKAFRSLLSSPKENIRKEACWTISNITA-------------G- 357 (526)
T ss_pred ----ccccccCHHHHhhcCeeec-CccceehheecccHHHHHHHhcChhhhhhhhhheeeccccc-------------C-
Confidence 6778899999999999998 67777899999999999999999999999999999999972 2
Q ss_pred cccCCCCCCcccccCcccCcccchhHhhccchHHHHHhhcCCChhhhHHHHHHHHhhh-cccccchhhHHHHhcCchHHH
Q 001833 858 WCFSPPPEIGCQVHGGLCGIESSFCLLEANAVRPLVRVLEDPDHGACEASLDALVTLI-EGERLQNGSKVLEDANAIDRM 936 (1008)
Q Consensus 858 ~~~~~~~~~~c~vh~~~c~~~~~~~l~~~g~i~~Lv~lL~~~d~~v~~~al~aL~~L~-~~~~~~~~~~~i~~~~~i~~l 936 (1008)
+.+++.+.++++.++||+.+|+..+..++..|+||+.|.. .+........++.+.|.|.+|
T Consensus 358 ------------------nteqiqavid~nliPpLi~lls~ae~k~kKEACWAisNatsgg~~~PD~iryLv~qG~IkpL 419 (526)
T COG5064 358 ------------------NTEQIQAVIDANLIPPLIHLLSSAEYKIKKEACWAISNATSGGLNRPDIIRYLVSQGFIKPL 419 (526)
T ss_pred ------------------CHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhccccCCchHHHHHHHccchhHH
Confidence 5778899999999999999999999999999999999999 655555668899999999999
Q ss_pred HHHhcCCChHHHHHHHHHHHHHhcChHHHH-Hh----------cc-ccCch-hhhhcccCCchhhHHHHHHHHH
Q 001833 937 VRFLSSPSPKLQEKALDSVERIFRLPEFKQ-KY----------GK-SAQMP-LVDLTQRGNSSMKSLSARVLAH 997 (1008)
Q Consensus 937 ~~ll~~~~~~l~~~a~~~L~~l~~~~~~~~-~~----------~~-~~~~~-Lv~l~~~~~~~~~~~Aa~~L~~ 997 (1008)
++++.-.+..+-+.++.+++++++..+... .+ -. .+++. +..+.+++|..+..+|.+++..
T Consensus 420 c~~L~~~dNkiiev~LD~~eniLk~Ge~d~~~~~~nin~ya~~vE~Aggmd~I~~~Q~s~n~~iy~KAYsIIe~ 493 (526)
T COG5064 420 CDLLDVVDNKIIEVALDAIENILKVGEQDRLRYGKNINIYAVYVEKAGGMDAIHGLQDSVNRTIYDKAYSIIEK 493 (526)
T ss_pred HHHHhccCccchhhhHHHHHHHHhhhhHHHHhccCCccHHHHHHHhcccHHHHHHhhhccccHHHHHHHHHHHH
Confidence 999998888899999999999988766322 12 12 23344 4446666889999999888753
No 9
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=99.94 E-value=2e-23 Score=244.69 Aligned_cols=500 Identities=19% Similarity=0.215 Sum_probs=372.1
Q ss_pred chHHHHHHHHHHHHHHhhchhhhhhHhhcCchHHHHHHHcCC---CHHHHHHHHHHHHHhccCChhhHHHhhccCCcHHH
Q 001833 348 EVEEVLHCLEQLQDLCQQRDQHREWVILENYIPKLIYLLGSK---NRDVRNRALIILHILVKDSNDTKERLANGDDAVES 424 (1008)
Q Consensus 348 ~~~~~~~al~~L~~l~~~~~~~r~~i~~~g~i~~L~~lL~s~---~~~~~~~Al~~L~~Ls~~~~~~k~~i~~~~g~i~~ 424 (1008)
+-.++.++...|..+|+..+.-...+...-++..|.+.|+.. +.+...+-+.+...+|... .--..+.. .-.-..
T Consensus 135 ~~~ek~~~~~~il~La~~~~NL~~l~~ne~l~~aL~RvLred~~ks~~l~tnI~~iF~~fS~f~-~fH~~l~~-~kiG~l 212 (708)
T PF05804_consen 135 DIPEKIRGTSLILQLARNPENLEELVQNETLMSALARVLREDWKKSVELATNIIYIFFCFSNFS-QFHPILAH-YKIGSL 212 (708)
T ss_pred ccHHHHHHHHHHHHHhCCcchHHHHHHhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhHH-HHHHHHHh-ccHHHH
Confidence 345566777888888876554445555556777788877642 3445555555555565554 22222222 111122
Q ss_pred HHHHhccChhHHH--HHHHHHHHh---c-cCchhhHHhhcccchHHHHHHHhcCCChHHHHHHHHHHHhhcCCcccHHHH
Q 001833 425 IVRSLGRRIEERK--LAVALLLEL---S-TCNTLRDQIGDVQGCILLLVTMASSDDNQASRDAQELLENLSFSDDNVVQM 498 (1008)
Q Consensus 425 Lv~~L~~~~~~~~--~A~~~L~~L---s-~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~~~n~~~i 498 (1008)
.++++.. +.++ ....-+... + ..+..+..+.+ ....+-.+++. .......+...|.||+.+..+...|
T Consensus 213 ~m~iie~--Elkr~~~w~~~l~~~~~~~~~~~~~~~~~~~---~~kk~~~l~~k-QeqLlrv~~~lLlNLAed~~ve~kM 286 (708)
T PF05804_consen 213 CMEIIEH--ELKRHDLWQEELRKKKKAAEEKPEAKKDYEK---ELKKLQTLIRK-QEQLLRVAFYLLLNLAEDPRVELKM 286 (708)
T ss_pred HHHHHHH--HHHHHHHHHHHHHhhhhhhccchhhhhhHHH---HHHHHHHHHHH-HHHHHHHHHHHHHHHhcChHHHHHH
Confidence 2233322 1111 111112211 1 11112222211 11222222322 3445567888999999999999999
Q ss_pred HhcCcHHHHHHHHhcCCHHHHHHHHHHHHHHcCChhhHHHHhhcCcHHHHHHHhccCCHHHHHHHHHHHHHhhCCCchhH
Q 001833 499 AKANYFKHLLQRLSAGPESVKMRMATTLAEMELTDHHKASLLEGNVLGPLLHLVSRGDIQMKKVAVKALRNLSSVPQNGL 578 (1008)
Q Consensus 499 ~~~g~v~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~~~~~~ 578 (1008)
.+.|+|+.|++.|..++.++...++..|.+|+...++|..+++.|+++.|++++.+++......++.+|+|||.+++.|.
T Consensus 287 ~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~ENK~~m~~~giV~kL~kLl~s~~~~l~~~aLrlL~NLSfd~~~R~ 366 (708)
T PF05804_consen 287 VNKGIVSLLVKCLDRENEELLILAVTFLKKLSIFKENKDEMAESGIVEKLLKLLPSENEDLVNVALRLLFNLSFDPELRS 366 (708)
T ss_pred HhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHhCcCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCChHHHHHHhcccCCCCcchHHHHHHHHHHHhccccccccCCcccccccchhHHHHHHHhhc-cCChHHHHHHHH
Q 001833 579 QMIKEGAVGPLVDLLLHHSSSSSSLREETATAIMHLAVSTMYQESSQTPVTLLESDKEIFMLFSLIN-LTGPNVQQRILQ 657 (1008)
Q Consensus 579 ~i~~~G~v~~Ll~ll~~~~~~~~~~~~~a~~~L~nLa~~~~~~~~~~~~~~~l~~~~~i~~L~~ll~-~~~~~v~~~al~ 657 (1008)
.|++.|++|.|+.++.++ ..+..+..+|++|+.++..+. .+...++++.++.++- ++++.+...++.
T Consensus 367 ~mV~~GlIPkLv~LL~d~-----~~~~val~iLy~LS~dd~~r~-------~f~~TdcIp~L~~~Ll~~~~~~v~~elia 434 (708)
T PF05804_consen 367 QMVSLGLIPKLVELLKDP-----NFREVALKILYNLSMDDEARS-------MFAYTDCIPQLMQMLLENSEEEVQLELIA 434 (708)
T ss_pred HHHHCCCcHHHHHHhCCC-----chHHHHHHHHHHhccCHhhHH-------HHhhcchHHHHHHHHHhCCCccccHHHHH
Confidence 999999999999999753 357789999999999777665 4666789999999766 456778888999
Q ss_pred HHHHhccCCChhhHHHHhhhcCChHHHHHhhccCChhHHHHHHHHHHHhccCCChhHHHhhhcccchHHHHHHhcCCCCH
Q 001833 658 TFNALCRSPSAGNIKTTLTQCSAIPVLVQLCEHDNENVRANAVKLFCCLVDDGDEAIIREHVGQKCLETLVTIIQSSHNE 737 (1008)
Q Consensus 658 aL~~L~~~~~~~~~~~~i~e~~~i~~Lv~ll~~~~~~v~~~a~~~L~~Ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~ 737 (1008)
.+.||+.++ ...+.+.+.++++.|+...-...+.+ ..+.+.|++ .+++.....+. +.+..|+.++..+++.
T Consensus 435 L~iNLa~~~---rnaqlm~~g~gL~~L~~ra~~~~D~l---LlKlIRNiS-~h~~~~k~~f~--~~i~~L~~~v~~~~~e 505 (708)
T PF05804_consen 435 LLINLALNK---RNAQLMCEGNGLQSLMKRALKTRDPL---LLKLIRNIS-QHDGPLKELFV--DFIGDLAKIVSSGDSE 505 (708)
T ss_pred HHHHHhcCH---HHHHHHHhcCcHHHHHHHHHhcccHH---HHHHHHHHH-hcCchHHHHHH--HHHHHHHHHhhcCCcH
Confidence 999999863 44467778888999998776654333 346899998 44433333332 6888999999988888
Q ss_pred HHHHHHHHHHhcCCC-ChhhHHHHHhcCCHHHHHHHhhCCCCCCCchhhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChH
Q 001833 738 EEIASAMGILSKLPE-VPQFTQWLLDAGALPIVLNFLKNGRQNDPNRFQVVENAVGALRRFTAPTNLEWQKRAAEAGVIP 816 (1008)
Q Consensus 738 ~v~~~a~~~L~nL~~-~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~v~~~a~~aL~~L~~~~~~~~~~~l~~~g~l~ 816 (1008)
+....++++|+||.. +......+.+.+.+|.+.++|..+. ..+++..+++..++.++. +++....+.+.|+++
T Consensus 506 e~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~~g~----~~dDl~LE~Vi~~gtla~--d~~~A~lL~~sgli~ 579 (708)
T PF05804_consen 506 EFVVECLGILANLTIPDLDWAQLLQEYNLLPWLKDLLKPGA----SEDDLLLEVVILLGTLAS--DPECAPLLAKSGLIP 579 (708)
T ss_pred HHHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhCCCC----CChHHHHHHHHHHHHHHC--CHHHHHHHHhCChHH
Confidence 999999999999987 5566666667899999999998764 346788899999999998 799999999999999
Q ss_pred HHHHHhhcC--ChHHHHHHHHHHhhhhhcCCCCCCCCCCCCcccccCCCCCCcccccCcccCcccchhH-hhccchHHHH
Q 001833 817 KLVQLLEYG--TTLTKEHAATSLARFSKNSLGLSRPIPKRKGFWCFSPPPEIGCQVHGGLCGIESSFCL-LEANAVRPLV 893 (1008)
Q Consensus 817 ~Lv~lL~~~--~~~v~~~Aa~aL~nLs~~~~~l~~~~~~~~g~~~~~~~~~~~c~vh~~~c~~~~~~~l-~~~g~i~~Lv 893 (1008)
.|+++|... |.+.....+.+..++..+.. .+..+ -+.+++..|+
T Consensus 580 ~Li~LL~~kqeDdE~VlQil~~f~~ll~h~~---------------------------------tr~~ll~~~~~~~yli 626 (708)
T PF05804_consen 580 TLIELLNAKQEDDEIVLQILYVFYQLLFHEE---------------------------------TREVLLKETEIPAYLI 626 (708)
T ss_pred HHHHHHHhhCchHHHHHHHHHHHHHHHcChH---------------------------------HHHHHHhccchHHHHH
Confidence 999999864 56888899999999985432 22233 4468899999
Q ss_pred HhhcCCChhhhHHHHHHHHhhh
Q 001833 894 RVLEDPDHGACEASLDALVTLI 915 (1008)
Q Consensus 894 ~lL~~~d~~v~~~al~aL~~L~ 915 (1008)
++++++|+.++..+-.+|--+.
T Consensus 627 dL~~d~N~~ir~~~d~~Ldii~ 648 (708)
T PF05804_consen 627 DLMHDKNAEIRKVCDNALDIIA 648 (708)
T ss_pred HHhcCCCHHHHHHHHHHHHHHH
Confidence 9999999999988877777776
No 10
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=99.93 E-value=1.2e-22 Score=238.21 Aligned_cols=395 Identities=16% Similarity=0.211 Sum_probs=331.5
Q ss_pred HHHHHhccChhHHHHHHHHHHHhccCchhhHHhhcccchHHHHHHHhcCCChHHHHHHHHHHHhhcCCcccHHHHHhcCc
Q 001833 424 SIVRSLGRRIEERKLAVALLLELSTCNTLRDQIGDVQGCILLLVTMASSDDNQASRDAQELLENLSFSDDNVVQMAKANY 503 (1008)
Q Consensus 424 ~Lv~~L~~~~~~~~~A~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~~~n~~~i~~~g~ 503 (1008)
.+-.++.+.....+.+..+|.+|+.++.+...+.+ .|+++.|+++|.+++.+....++..|.+||...+|+..|.+.|+
T Consensus 254 k~~~l~~kQeqLlrv~~~lLlNLAed~~ve~kM~~-~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~ENK~~m~~~gi 332 (708)
T PF05804_consen 254 KLQTLIRKQEQLLRVAFYLLLNLAEDPRVELKMVN-KGIVSLLVKCLDRENEELLILAVTFLKKLSIFKENKDEMAESGI 332 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHh-cCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHcCC
Confidence 33344444455566788899999999999999987 89999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHcCChhhHHHHhhcCcHHHHHHHhccCCHHHHHHHHHHHHHhhCCCchhHHHHhc
Q 001833 504 FKHLLQRLSAGPESVKMRMATTLAEMELTDHHKASLLEGNVLGPLLHLVSRGDIQMKKVAVKALRNLSSVPQNGLQMIKE 583 (1008)
Q Consensus 504 v~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~~~~~~~i~~~ 583 (1008)
+++|++++..++.+.+..++.+|+||+..++.|..+++.|++|.|+.+|.++ ..+..++.+|.+||..++++..+...
T Consensus 333 V~kL~kLl~s~~~~l~~~aLrlL~NLSfd~~~R~~mV~~GlIPkLv~LL~d~--~~~~val~iLy~LS~dd~~r~~f~~T 410 (708)
T PF05804_consen 333 VEKLLKLLPSENEDLVNVALRLLFNLSFDPELRSQMVSLGLIPKLVELLKDP--NFREVALKILYNLSMDDEARSMFAYT 410 (708)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhCcCHHHHHHHHHCCCcHHHHHHhCCC--chHHHHHHHHHHhccCHhhHHHHhhc
Confidence 9999999999999999999999999999999999999999999999999754 46678999999999999999999999
Q ss_pred CChHHHHHHhcccCCCCcchHHHHHHHHHHHhccccccccCCcccccccchhHHHHHHHhhccCChHHHHHHHHHHHHhc
Q 001833 584 GAVGPLVDLLLHHSSSSSSLREETATAIMHLAVSTMYQESSQTPVTLLESDKEIFMLFSLINLTGPNVQQRILQTFNALC 663 (1008)
Q Consensus 584 G~v~~Ll~ll~~~~~~~~~~~~~a~~~L~nLa~~~~~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~aL~~L~ 663 (1008)
+++|.++.++..++. ..+...+++++.||+.+....+ ++...++++.|+...-.... ...+..+.|++
T Consensus 411 dcIp~L~~~Ll~~~~--~~v~~eliaL~iNLa~~~rnaq-------lm~~g~gL~~L~~ra~~~~D---~lLlKlIRNiS 478 (708)
T PF05804_consen 411 DCIPQLMQMLLENSE--EEVQLELIALLINLALNKRNAQ-------LMCEGNGLQSLMKRALKTRD---PLLLKLIRNIS 478 (708)
T ss_pred chHHHHHHHHHhCCC--ccccHHHHHHHHHHhcCHHHHH-------HHHhcCcHHHHHHHHHhccc---HHHHHHHHHHH
Confidence 999999999877653 4567788999999998765443 55566788888877554332 22457889999
Q ss_pred cCCChhhHHHHhhhcCChHHHHHhhccC-ChhHHHHHHHHHHHhccCCChhHHHhhhcccchHHHHHHhcCC-CCHHHHH
Q 001833 664 RSPSAGNIKTTLTQCSAIPVLVQLCEHD-NENVRANAVKLFCCLVDDGDEAIIREHVGQKCLETLVTIIQSS-HNEEEIA 741 (1008)
Q Consensus 664 ~~~~~~~~~~~i~e~~~i~~Lv~ll~~~-~~~v~~~a~~~L~~Ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~-~~~~v~~ 741 (1008)
.++. ..+..+. +++..|+.++..+ +++....++.+|+||+ ..+.+....+.+.+.+|.|.++|..+ ..+++..
T Consensus 479 ~h~~--~~k~~f~--~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~-~~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~L 553 (708)
T PF05804_consen 479 QHDG--PLKELFV--DFIGDLAKIVSSGDSEEFVVECLGILANLT-IPDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLL 553 (708)
T ss_pred hcCc--hHHHHHH--HHHHHHHHHhhcCCcHHHHHHHHHHHHhcc-cCCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHH
Confidence 8853 3344444 4688888888776 6888999999999997 44444444445679999999999877 4567888
Q ss_pred HHHHHHhcCCCChhhHHHHHhcCCHHHHHHHhhCCCCCCCchhhHHHHHHHHHHHhcCCCCHHHHHHH-HHcCChHHHHH
Q 001833 742 SAMGILSKLPEVPQFTQWLLDAGALPIVLNFLKNGRQNDPNRFQVVENAVGALRRFTAPTNLEWQKRA-AEAGVIPKLVQ 820 (1008)
Q Consensus 742 ~a~~~L~nL~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~v~~~a~~aL~~L~~~~~~~~~~~l-~~~g~l~~Lv~ 820 (1008)
.++..++.++.++.....+.+.|.++.|+.+|.... .+.+++-..+.++.+|..+ ++.+..+ .+.++...|++
T Consensus 554 E~Vi~~gtla~d~~~A~lL~~sgli~~Li~LL~~kq----eDdE~VlQil~~f~~ll~h--~~tr~~ll~~~~~~~ylid 627 (708)
T PF05804_consen 554 EVVILLGTLASDPECAPLLAKSGLIPTLIELLNAKQ----EDDEIVLQILYVFYQLLFH--EETREVLLKETEIPAYLID 627 (708)
T ss_pred HHHHHHHHHHCCHHHHHHHHhCChHHHHHHHHHhhC----chHHHHHHHHHHHHHHHcC--hHHHHHHHhccchHHHHHH
Confidence 999999999999999999999999999999999854 5788999999999999995 6666665 45789999999
Q ss_pred HhhcCChHHHHHHHHHHhhhhhcC
Q 001833 821 LLEYGTTLTKEHAATSLARFSKNS 844 (1008)
Q Consensus 821 lL~~~~~~v~~~Aa~aL~nLs~~~ 844 (1008)
++++.++.+++.|-.+|-=++..+
T Consensus 628 L~~d~N~~ir~~~d~~Ldii~e~d 651 (708)
T PF05804_consen 628 LMHDKNAEIRKVCDNALDIIAEYD 651 (708)
T ss_pred HhcCCCHHHHHHHHHHHHHHHHhC
Confidence 999999999999999998887544
No 11
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=99.84 E-value=8.1e-19 Score=200.44 Aligned_cols=386 Identities=19% Similarity=0.207 Sum_probs=308.6
Q ss_pred hHHHHHHHcCCCHHHHHHHHHHHHHhccCChhhHHHhhccCCcHHHHHHHhccChhHHHHHHHHHHHhccCchhhHHhhc
Q 001833 379 IPKLIYLLGSKNRDVRNRALIILHILVKDSNDTKERLANGDDAVESIVRSLGRRIEERKLAVALLLELSTCNTLRDQIGD 458 (1008)
Q Consensus 379 i~~L~~lL~s~~~~~~~~Al~~L~~Ls~~~~~~k~~i~~~~g~i~~Lv~~L~~~~~~~~~A~~~L~~Ls~~~~~~~~i~~ 458 (1008)
.|..+.+|.+.++.+|..|...+..++.++...|..+-.
T Consensus 235 lpe~i~mL~~q~~~~qsnaaaylQHlcfgd~~ik~~vrq----------------------------------------- 273 (717)
T KOG1048|consen 235 LPEVISMLMSQDPSVQSNAAAYLQHLCFGDNKIKSRVRQ----------------------------------------- 273 (717)
T ss_pred cHHHHHHHhccChhhhHHHHHHHHHHHhhhHHHHHHHHH-----------------------------------------
Confidence 667777788888888888888888888777555554443
Q ss_pred ccchHHHHHHHhcCCChHHHHHHHHHHHhhcC---CcccHHHHHhcCcHHHHHHHHhc-CCHHHHHHHHHHHHHHcCChh
Q 001833 459 VQGCILLLVTMASSDDNQASRDAQELLENLSF---SDDNVVQMAKANYFKHLLQRLSA-GPESVKMRMATTLAEMELTDH 534 (1008)
Q Consensus 459 ~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~---~~~n~~~i~~~g~v~~Lv~~L~~-~~~~~~~~aa~~L~~Ls~~~~ 534 (1008)
.|+|+.||.+|.+.+.+++..|+.+|.||.. .++|+..+.+.++|+.++++|+. ++.+++++...+|+||+.+|.
T Consensus 274 -lggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~NKlai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D~ 352 (717)
T KOG1048|consen 274 -LGGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDSNKLAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSNDA 352 (717)
T ss_pred -hccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCcccchhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccchhH
Confidence 6888889999999999999999999999974 44689999999999999999996 689999999999999999998
Q ss_pred hHHHHhhcCcHHHHHHHhccC--------------CHHHHHHHHHHHHHhhC-CCchhHHHHhc-CChHHHHHHhccc--
Q 001833 535 HKASLLEGNVLGPLLHLVSRG--------------DIQMKKVAVKALRNLSS-VPQNGLQMIKE-GAVGPLVDLLLHH-- 596 (1008)
Q Consensus 535 ~k~~i~~~g~i~~Lv~lL~~~--------------~~~~~~~A~~aL~~L~~-~~~~~~~i~~~-G~v~~Ll~ll~~~-- 596 (1008)
.|..++.+ ++..|.+-+-.+ +..+-.+++.+|+|++. ..+.|.+|.+. |.|..|+..++..
T Consensus 353 lK~~ii~~-al~tLt~~vI~P~Sgw~~~~~~~~~~~~~vf~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~ 431 (717)
T KOG1048|consen 353 LKMLIITS-ALSTLTDNVIIPHSGWEEEPAPRKAEDSTVFRNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQ 431 (717)
T ss_pred HHHHHHHH-HHHHHHHhhcccccccCCCCcccccccceeeehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHH
Confidence 88877654 444544333211 24566899999999997 77888888755 8899999888731
Q ss_pred -CCCCcchHHHHHHHHHHHhcccc-----------------------------------------------ccccCCccc
Q 001833 597 -SSSSSSLREETATAIMHLAVSTM-----------------------------------------------YQESSQTPV 628 (1008)
Q Consensus 597 -~~~~~~~~~~a~~~L~nLa~~~~-----------------------------------------------~~~~~~~~~ 628 (1008)
...+....++|+.+|.||+..-. .+...+.+.
T Consensus 432 ~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~~~~~~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~ 511 (717)
T KOG1048|consen 432 KSDLDSKSVENCVCILRNLSYRLEAEVPPKYRQVLANIARLPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGS 511 (717)
T ss_pred hccccchhHHHHHHHHhhcCchhhhhcCHhhhhHhhcccccccCCCcccccccccchhhhchhcccccCCcccccCCCCc
Confidence 11124578999999999976211 011124466
Q ss_pred ccccchhHHHHHHHhhc-cCChHHHHHHHHHHHHhccCC--ChhhHHHHh-hhcCChHHHHHhhccCChhHHHHHHHHHH
Q 001833 629 TLLESDKEIFMLFSLIN-LTGPNVQQRILQTFNALCRSP--SAGNIKTTL-TQCSAIPVLVQLCEHDNENVRANAVKLFC 704 (1008)
Q Consensus 629 ~~l~~~~~i~~L~~ll~-~~~~~v~~~al~aL~~L~~~~--~~~~~~~~i-~e~~~i~~Lv~ll~~~~~~v~~~a~~~L~ 704 (1008)
..++....|...+.++. +.++.+.+.++.+|.||+... ....++..+ ....+++.|++|++.+++.+...++.+|.
T Consensus 512 e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~~~~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~Lr 591 (717)
T KOG1048|consen 512 EWLWHPSVVRPYLLLLALSKNDNTLEASAGALQNLTAGLWTWSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALR 591 (717)
T ss_pred eeeecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhccCCcchhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHh
Confidence 78999999999777777 668899999999999998752 344555555 77889999999999999999999999999
Q ss_pred HhccCCChhHHHhhhcccchHHHHHHhcCCCC-----HHHHHHHHHHHhcCCC-ChhhHHHHHhcCCHHHHHHHhhCCCC
Q 001833 705 CLVDDGDEAIIREHVGQKCLETLVTIIQSSHN-----EEEIASAMGILSKLPE-VPQFTQWLLDAGALPIVLNFLKNGRQ 778 (1008)
Q Consensus 705 ~Ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~-----~~v~~~a~~~L~nL~~-~~~~~~~l~~~g~l~~Lv~lL~~~~~ 778 (1008)
||+. +...+.++..++++.|++.|..... .+....++.+|.|+.. +..+.+.+.+.++++.|+.+.++.
T Consensus 592 Nls~---d~rnk~ligk~a~~~lv~~Lp~~~~~~~~sedtv~~vc~tl~niv~~~~~nAkdl~~~~g~~kL~~I~~s~-- 666 (717)
T KOG1048|consen 592 NLSR---DIRNKELIGKYAIPDLVRCLPGSGPSTSLSEDTVRAVCHTLNNIVRKNVLNAKDLLEIKGIPKLRLISKSQ-- 666 (717)
T ss_pred hhcc---CchhhhhhhcchHHHHHHhCcCCCCCcCchHHHHHHHHHhHHHHHHHhHHHHHHHHhccChHHHHHHhccc--
Confidence 9983 3345666778999999999988754 6788889999999986 999999999999999999999983
Q ss_pred CCCchhhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHH
Q 001833 779 NDPNRFQVVENAVGALRRFTAPTNLEWQKRAAEAGVIPK 817 (1008)
Q Consensus 779 ~~~~~~~v~~~a~~aL~~L~~~~~~~~~~~l~~~g~l~~ 817 (1008)
.++...+.|...|..|-. ..+++......|+-..
T Consensus 667 ---~S~k~~kaAs~vL~~lW~--y~eLh~~~kk~g~~q~ 700 (717)
T KOG1048|consen 667 ---HSPKEFKAASSVLDVLWQ--YKELHFKLKKKGFKQQ 700 (717)
T ss_pred ---CCHHHHHHHHHHHHHHHH--HHHHhhhHhhhhhHHH
Confidence 567889999999999988 5777777766666544
No 12
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=99.84 E-value=1.6e-21 Score=163.30 Aligned_cols=71 Identities=45% Similarity=0.781 Sum_probs=62.6
Q ss_pred CccccccccccccCCceeccCcccccHHHHHHHHhcCCCCCCCcCccCCCCCCccCHhhHHHHHHHHHhcc
Q 001833 263 LQSFYCPITRDVMVDPVETSSGQTFERSAIEKWFSDGNNLCPLTMTVLDTSILRPNKTLRQSIEEWKDRNT 333 (1008)
Q Consensus 263 ~~~~~cpi~~~~m~dpv~~~~g~t~~r~~i~~w~~~~~~~cp~~~~~l~~~~l~pN~~l~~~I~~w~~~~~ 333 (1008)
|++|+||||+++|.|||++++||||||.+|++|+..++.+||.|+++++...++||..||+.|++|+.+|.
T Consensus 2 P~~f~CpIt~~lM~dPVi~~~G~tyer~~I~~~l~~~~~~~P~t~~~l~~~~l~pn~~Lk~~I~~~~~~~~ 72 (73)
T PF04564_consen 2 PDEFLCPITGELMRDPVILPSGHTYERSAIERWLEQNGGTDPFTRQPLSESDLIPNRALKSAIEEWCAENK 72 (73)
T ss_dssp SGGGB-TTTSSB-SSEEEETTSEEEEHHHHHHHHCTTSSB-TTT-SB-SGGGSEE-HHHHHHHHHHHHHCT
T ss_pred CcccCCcCcCcHhhCceeCCcCCEEcHHHHHHHHHcCCCCCCCCCCcCCcccceECHHHHHHHHHHHHHcc
Confidence 68999999999999999999999999999999999988899999999999999999999999999998874
No 13
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=99.80 E-value=8.9e-18 Score=192.02 Aligned_cols=420 Identities=19% Similarity=0.234 Sum_probs=305.7
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHhhcC-CcccHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHHcC---ChhhHHH
Q 001833 463 ILLLVTMASSDDNQASRDAQELLENLSF-SDDNVVQMAKANYFKHLLQRLSAGPESVKMRMATTLAEMEL---TDHHKAS 538 (1008)
Q Consensus 463 i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~-~~~n~~~i~~~g~v~~Lv~~L~~~~~~~~~~aa~~L~~Ls~---~~~~k~~ 538 (1008)
++..+.+|.+.++..+-+|...|..+|. +.+.+..+.+.|+|+.|+.+|.+.+.+++.+++++|.||.. ++++|..
T Consensus 235 lpe~i~mL~~q~~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~NKla 314 (717)
T KOG1048|consen 235 LPEVISMLMSQDPSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDSNKLA 314 (717)
T ss_pred cHHHHHHHhccChhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCcccchh
Confidence 5677888889999999999999999996 55668888899999999999999999999999999999954 4468999
Q ss_pred HhhcCcHHHHHHHhcc-CCHHHHHHHHHHHHHhhCCCchhHHHHhcCChHHHHHHhcccCCCCcchHHHHHHHHHHHhcc
Q 001833 539 LLEGNVLGPLLHLVSR-GDIQMKKVAVKALRNLSSVPQNGLQMIKEGAVGPLVDLLLHHSSSSSSLREETATAIMHLAVS 617 (1008)
Q Consensus 539 i~~~g~i~~Lv~lL~~-~~~~~~~~A~~aL~~L~~~~~~~~~i~~~G~v~~Ll~ll~~~~~~~~~~~~~a~~~L~nLa~~ 617 (1008)
|.+.++|+.++++|+. .|.++++....+|+||++++..+..++.. ++..|..-+........ .
T Consensus 315 i~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D~lK~~ii~~-al~tLt~~vI~P~Sgw~---------------~ 378 (717)
T KOG1048|consen 315 IKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSNDALKMLIITS-ALSTLTDNVIIPHSGWE---------------E 378 (717)
T ss_pred hhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccchhHHHHHHHHH-HHHHHHHhhcccccccC---------------C
Confidence 9999999999999996 68999999999999999986666666543 44454444432221100 0
Q ss_pred ccccccCCcccccccchhHHHHHHHhhccCChHHHHHHHHHHHHhccCCChhhHHHHhhhc-CChHHHHHhhcc------
Q 001833 618 TMYQESSQTPVTLLESDKEIFMLFSLINLTGPNVQQRILQTFNALCRSPSAGNIKTTLTQC-SAIPVLVQLCEH------ 690 (1008)
Q Consensus 618 ~~~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~aL~~L~~~~~~~~~~~~i~e~-~~i~~Lv~ll~~------ 690 (1008)
++.. .+..++++..++.++|.|+++. +.+.|+.++++ |.|..|+..+++
T Consensus 379 ~~~~----------------------~~~~~~~vf~n~tgcLRNlSs~--~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~ 434 (717)
T KOG1048|consen 379 EPAP----------------------RKAEDSTVFRNVTGCLRNLSSA--GQEAREQMRECDGLIDALLFSIQTAIQKSD 434 (717)
T ss_pred CCcc----------------------cccccceeeehhhhhhccccch--hHHHHHHHhhccchHHHHHHHHHHHHHhcc
Confidence 0000 1112355666778888888763 67788888886 558899988873
Q ss_pred CChhHHHHHHHHHHHhccCCChhHHHhhhcccchHHHHHHhcCCC---CHHHHHHHHHHHhc-------------CC---
Q 001833 691 DNENVRANAVKLFCCLVDDGDEAIIREHVGQKCLETLVTIIQSSH---NEEEIASAMGILSK-------------LP--- 751 (1008)
Q Consensus 691 ~~~~v~~~a~~~L~~Ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~---~~~v~~~a~~~L~n-------------L~--- 751 (1008)
-+....++++.+|.||+ ..-.. .+.+..-+.+.... ..+-.....++++. ++
T Consensus 435 ~d~K~VENcvCilRNLS-Yrl~~--------Evp~~~~~~~~~~~~~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~ 505 (717)
T KOG1048|consen 435 LDSKSVENCVCILRNLS-YRLEA--------EVPPKYRQVLANIARLPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERA 505 (717)
T ss_pred ccchhHHHHHHHHhhcC-chhhh--------hcCHhhhhHhhcccccccCCCcccccccccchhhhchhcccccCCcccc
Confidence 25677888999999998 32211 11111111111100 00000011111111 11
Q ss_pred CChhhHHHHHhcCCHHHHHHHhhCCCCCCCchhhHHHHHHHHHHHhcCCC---CHHHHHHH-HHcCChHHHHHHhhcCCh
Q 001833 752 EVPQFTQWLLDAGALPIVLNFLKNGRQNDPNRFQVVENAVGALRRFTAPT---NLEWQKRA-AEAGVIPKLVQLLEYGTT 827 (1008)
Q Consensus 752 ~~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~v~~~a~~aL~~L~~~~---~~~~~~~l-~~~g~l~~Lv~lL~~~~~ 827 (1008)
..+....+++...++.....+|... .+..+.|+++++|.|++.+. ....+..+ .+..++|.|+++|+.+++
T Consensus 506 ~~pkG~e~Lw~p~vVr~Yl~Ll~~s-----~n~~TlEasaGaLQNltA~~~~~~~~~~~~v~~kekgl~~l~~ll~~~~~ 580 (717)
T KOG1048|consen 506 TAPKGSEWLWHPSVVRPYLLLLALS-----KNDNTLEASAGALQNLTAGLWTWSEYMRGAVFRKEKGLPPLVELLRNDDS 580 (717)
T ss_pred cCCCCceeeecHHHHHHHHHHHHHh-----cchHHHHHhhhhHhhhhccCCcchhHHHhhhhhhccCccHHHHHHhcCCc
Confidence 1444556677777888877777753 46789999999999999973 22344444 788999999999999999
Q ss_pred HHHHHHHHHHhhhhhcCCCCCCCCCCCCcccccCCCCCCcccccCcccCcccchhHhhccchHHHHHhhcCCC------h
Q 001833 828 LTKEHAATSLARFSKNSLGLSRPIPKRKGFWCFSPPPEIGCQVHGGLCGIESSFCLLEANAVRPLVRVLEDPD------H 901 (1008)
Q Consensus 828 ~v~~~Aa~aL~nLs~~~~~l~~~~~~~~g~~~~~~~~~~~c~vh~~~c~~~~~~~l~~~g~i~~Lv~lL~~~d------~ 901 (1008)
.+...++.+|.|++.+..+ ..++..++++.|+++|.+.. +
T Consensus 581 ~vv~s~a~~LrNls~d~rn----------------------------------k~ligk~a~~~lv~~Lp~~~~~~~~se 626 (717)
T KOG1048|consen 581 DVVRSAAGALRNLSRDIRN----------------------------------KELIGKYAIPDLVRCLPGSGPSTSLSE 626 (717)
T ss_pred hHHHHHHHHHhhhccCchh----------------------------------hhhhhcchHHHHHHhCcCCCCCcCchH
Confidence 9999999999999954322 23455789999999998543 4
Q ss_pred hhhHHHHHHHHhhhcccccchhhHHHHhcCchHHHHHHhcC-CChHHHHHHHHHHHHHhcChHHHHHhcccc
Q 001833 902 GACEASLDALVTLIEGERLQNGSKVLEDANAIDRMVRFLSS-PSPKLQEKALDSVERIFRLPEFKQKYGKSA 972 (1008)
Q Consensus 902 ~v~~~al~aL~~L~~~~~~~~~~~~i~~~~~i~~l~~ll~~-~~~~l~~~a~~~L~~l~~~~~~~~~~~~~~ 972 (1008)
++..+++.+|.+++ .+.-.+.+.+.+.+|+++|+.+..+ .++.+-+.|..++..++.+.|++..|..++
T Consensus 627 dtv~~vc~tl~niv--~~~~~nAkdl~~~~g~~kL~~I~~s~~S~k~~kaAs~vL~~lW~y~eLh~~~kk~g 696 (717)
T KOG1048|consen 627 DTVRAVCHTLNNIV--RKNVLNAKDLLEIKGIPKLRLISKSQHSPKEFKAASSVLDVLWQYKELHFKLKKKG 696 (717)
T ss_pred HHHHHHHHhHHHHH--HHhHHHHHHHHhccChHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhhhHhhhh
Confidence 68889999999999 2223778889999999999999855 567899999999999999999888776554
No 14
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=99.75 E-value=6.9e-17 Score=190.18 Aligned_cols=374 Identities=19% Similarity=0.218 Sum_probs=287.3
Q ss_pred hhHHHHHHHHHHHhccCchhhHHhhcccchHHHHHHHhcCC---ChHHHHHHHHHHHhhcCCc-ccHHHHHhcCcHHHHH
Q 001833 433 IEERKLAVALLLELSTCNTLRDQIGDVQGCILLLVTMASSD---DNQASRDAQELLENLSFSD-DNVVQMAKANYFKHLL 508 (1008)
Q Consensus 433 ~~~~~~A~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~---~~~~~~~a~~aL~~Ls~~~-~n~~~i~~~g~v~~Lv 508 (1008)
....+..+..+++++.+++.+..+.+ .|+++.|++++... +...+..|-.+|+|+..+. +.+..-.+.-++.
T Consensus 208 t~D~ee~ar~fLemSss~esCaamR~-SgCLpLLvQilH~~d~~~kear~~A~aALHNIVhSqPD~kr~RRE~kvL~--- 283 (2195)
T KOG2122|consen 208 TDDEEEMARTFLEMSSSPESCAAMRR-SGCLPLLVQILHGPDDEDKEARKRASAALHNIVHSQPDEKRGRREKKVLH--- 283 (2195)
T ss_pred cCCHHHHHHHHHHhccCchhhHHHHh-ccchHHHHHHhhCCchhhHHHHHHHHHHHHHHhhcCcchhhhHHHHHHHH---
Confidence 34566777889999999999888877 89999999999843 5688899999999996433 2222111111111
Q ss_pred HHHhcCCHHHHHHHHHHHHHHcCChhhHHHHhhcCcHHHHHHHhccCCHHHHHHHHHHHHHhhCCCchhHHHHhcCChHH
Q 001833 509 QRLSAGPESVKMRMATTLAEMELTDHHKASLLEGNVLGPLLHLVSRGDIQMKKVAVKALRNLSSVPQNGLQMIKEGAVGP 588 (1008)
Q Consensus 509 ~~L~~~~~~~~~~aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~~~~~~~i~~~G~v~~ 588 (1008)
+| ..++..|. ..+..+-..|. ...-.....-...|+.+|.+++-+.++|..|.+.|++.+
T Consensus 284 -lL----eQIraYC~----------~~~~~lqar~~-----~~apa~~~H~lcaA~~~lMK~SFDEEhR~aM~ELG~LqA 343 (2195)
T KOG2122|consen 284 -LL----EQIRAYCE----------TCWTWLQARGP-----AIAPASDEHQLCAALCTLMKLSFDEEHRHAMNELGGLQA 343 (2195)
T ss_pred -HH----HHHHHHHH----------HHHHHHHhcCC-----CCCCcccchhhHHHHHHHHHhhccHHHHHHHHHhhhHHH
Confidence 11 11222211 11111111111 001111222234788889999999999999999999999
Q ss_pred HHHHhcccC---------CCCcchHHHHHHHHHHHhccccccccCCcccccccchhHHHHHHHhhccCChHHHHHHHHHH
Q 001833 589 LVDLLLHHS---------SSSSSLREETATAIMHLAVSTMYQESSQTPVTLLESDKEIFMLFSLINLTGPNVQQRILQTF 659 (1008)
Q Consensus 589 Ll~ll~~~~---------~~~~~~~~~a~~~L~nLa~~~~~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~aL 659 (1008)
+-+|++... .....++.+|..+|.||..++..... .+-...|++..++..|.+...++......+|
T Consensus 344 IaeLl~vDh~mhgp~tnd~~~~aLRrYa~MALTNLTFGDv~NKa-----~LCs~rgfMeavVAQL~s~peeL~QV~AsvL 418 (2195)
T KOG2122|consen 344 IAELLQVDHEMHGPETNDGECNALRRYAGMALTNLTFGDVANKA-----TLCSQRGFMEAVVAQLISAPEELLQVYASVL 418 (2195)
T ss_pred HHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhccccccccchh-----hhhhhhhHHHHHHHHHhcChHHHHHHHHHHH
Confidence 999886421 11246899999999999998877654 3445678899999999999999999999999
Q ss_pred HHhccCCChhhHHHHhhhcCChHHHHHh-hccCChhHHHHHHHHHHHhccCCChhHHHhhh-cccchHHHHHHhcCC---
Q 001833 660 NALCRSPSAGNIKTTLTQCSAIPVLVQL-CEHDNENVRANAVKLFCCLVDDGDEAIIREHV-GQKCLETLVTIIQSS--- 734 (1008)
Q Consensus 660 ~~L~~~~~~~~~~~~i~e~~~i~~Lv~l-l~~~~~~v~~~a~~~L~~Ls~~~~~~~~~~~~-~~~~i~~Lv~lL~~~--- 734 (1008)
.||+... ....+..+++.|-+..|... ++...+......+.+||||+ .++.++...+. -.|++..||.+|...
T Consensus 419 RNLSWRA-D~nmKkvLrE~GsVtaLa~~al~~~kEsTLKavLSALWNLS-AHcteNKA~iCaVDGALaFLVg~LSY~~qs 496 (2195)
T KOG2122|consen 419 RNLSWRA-DSNMKKVLRETGSVTALAACALRNKKESTLKAVLSALWNLS-AHCTENKAEICAVDGALAFLVGTLSYEGQS 496 (2195)
T ss_pred Hhccccc-cccHHHHHHhhhhHHHHHHHHHHhcccchHHHHHHHHhhhh-hcccccchhhhcccchHHHHHhhccccCCc
Confidence 9999864 45678889999988888875 45556788889999999999 77777777764 458999999999876
Q ss_pred CCHHHHHHHHHHHhcCCC----ChhhHHHHHhcCCHHHHHHHhhCCCCCCCchhhHHHHHHHHHHHhcCCCCHHHHHHHH
Q 001833 735 HNEEEIASAMGILSKLPE----VPQFTQWLLDAGALPIVLNFLKNGRQNDPNRFQVVENAVGALRRFTAPTNLEWQKRAA 810 (1008)
Q Consensus 735 ~~~~v~~~a~~~L~nL~~----~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~v~~~a~~aL~~L~~~~~~~~~~~l~ 810 (1008)
....+.+.+-++|.|.+. .+..++.+.+.+.+..|++.|++ +.-.++-++|++|+||+.. +++-++.+.
T Consensus 497 ~tLaIIEsaGGILRNVSS~IAt~E~yRQILR~~NCLq~LLQ~LKS------~SLTiVSNaCGTLWNLSAR-~p~DQq~Lw 569 (2195)
T KOG2122|consen 497 NTLAIIESAGGILRNVSSLIATCEDYRQILRRHNCLQTLLQHLKS------HSLTIVSNACGTLWNLSAR-SPEDQQMLW 569 (2195)
T ss_pred chhhhhhcCccHHHHHHhHhhccchHHHHHHHhhHHHHHHHHhhh------cceEEeecchhhhhhhhcC-CHHHHHHHH
Confidence 234678889999999877 78889999999999999999999 7788999999999999998 899999999
Q ss_pred HcCChHHHHHHhhcCChHHHHHHHHHHhhhhhcC
Q 001833 811 EAGVIPKLVQLLEYGTTLTKEHAATSLARFSKNS 844 (1008)
Q Consensus 811 ~~g~l~~Lv~lL~~~~~~v~~~Aa~aL~nLs~~~ 844 (1008)
+.|+++.|..++++.+..+-.-++.+|.||..+-
T Consensus 570 D~gAv~mLrnLIhSKhkMIa~GSaaALrNLln~R 603 (2195)
T KOG2122|consen 570 DDGAVPMLRNLIHSKHKMIAMGSAAALRNLLNFR 603 (2195)
T ss_pred hcccHHHHHHHHhhhhhhhhhhHHHHHHHHhcCC
Confidence 9999999999999999999999999999998654
No 15
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.73 E-value=1.1e-15 Score=156.42 Aligned_cols=262 Identities=15% Similarity=0.180 Sum_probs=210.4
Q ss_pred HHHHHHHHHhccCChhhHHHhhccCCcHHHHHHHhcc-C-hhHHHHHHHHHHHhccCchhhHHhhcc---------cchH
Q 001833 395 NRALIILHILVKDSNDTKERLANGDDAVESIVRSLGR-R-IEERKLAVALLLELSTCNTLRDQIGDV---------QGCI 463 (1008)
Q Consensus 395 ~~Al~~L~~Ls~~~~~~k~~i~~~~g~i~~Lv~~L~~-~-~~~~~~A~~~L~~Ls~~~~~~~~i~~~---------~g~i 463 (1008)
...+..+..-+..+.-||+.+++ .+.++.+...|.+ + .+..+.+...++.|..++++|..++.. .|++
T Consensus 165 ~~~~~~v~~Ac~~hE~nrQ~~m~-~~il~Li~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l 243 (461)
T KOG4199|consen 165 LLTLQWLQKACIMHEVNRQLFME-LKILELILQVLNREGKTRTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAKEGIL 243 (461)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHH-hhHHHHHHHHHcccCccHHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHHhhhH
Confidence 33333444444444578999999 8999999988865 3 357788889999998777766555432 3667
Q ss_pred HHHHHHhcC-CChHHHHHHHHHHHhhcCCcccHHHHHhcCcHHHHHHHHhcCC-HH---HHHHHHHHHHHHcCChhhHHH
Q 001833 464 LLLVTMASS-DDNQASRDAQELLENLSFSDDNVVQMAKANYFKHLLQRLSAGP-ES---VKMRMATTLAEMELTDHHKAS 538 (1008)
Q Consensus 464 ~~Lv~lL~~-~~~~~~~~a~~aL~~Ls~~~~n~~~i~~~g~v~~Lv~~L~~~~-~~---~~~~aa~~L~~Ls~~~~~k~~ 538 (1008)
..|+..++- -+|.....+..+|..|+..++.+..+++.|++..|+..+.+.+ .. ....++..|..|+++|++|..
T Consensus 244 ~~L~Eal~A~~dp~~L~~l~~tl~~lAVr~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralAG~DsvKs~ 323 (461)
T KOG4199|consen 244 TALTEALQAGIDPDSLVSLSTTLKALAVRDEICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALAGSDSVKST 323 (461)
T ss_pred HHHHHHHHccCCccHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHhCCCchHHH
Confidence 888998884 4789999999999999999999999999999999999998743 33 446788999999999999999
Q ss_pred HhhcCcHHHHHHHhcc--CCHHHHHHHHHHHHHhh-CCCchhHHHHhcCChHHHHHHhcccCCCCcchHHHHHHHHHHHh
Q 001833 539 LLEGNVLGPLLHLVSR--GDIQMKKVAVKALRNLS-SVPQNGLQMIKEGAVGPLVDLLLHHSSSSSSLREETATAIMHLA 615 (1008)
Q Consensus 539 i~~~g~i~~Lv~lL~~--~~~~~~~~A~~aL~~L~-~~~~~~~~i~~~G~v~~Ll~ll~~~~~~~~~~~~~a~~~L~nLa 615 (1008)
|++.|+.+.++.++.. .+|.+.+.++.++.-|| +.|++...+++.|+-...++.|+.++.. ..++++|++.++|++
T Consensus 324 IV~~gg~~~ii~l~~~h~~~p~Vi~~~~a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP~~-a~vQrnac~~IRNiv 402 (461)
T KOG4199|consen 324 IVEKGGLDKIITLALRHSDDPLVIQEVMAIISILCLRSPDHSAKAIEAGAADLAVQAMKAHPVA-AQVQRNACNMIRNIV 402 (461)
T ss_pred HHHhcChHHHHHHHHHcCCChHHHHHHHHHHHHHHhcCcchHHHHHhcchHHHHHHHHHhCcHH-HHHHHHHHHHHHHHH
Confidence 9999999999988753 48999999999999999 6999999999999999999999987655 689999999999999
Q ss_pred ccccccccCCcccccccchhHHHHHHHhhccCChHHHHHHHHHHHHhccC
Q 001833 616 VSTMYQESSQTPVTLLESDKEIFMLFSLINLTGPNVQQRILQTFNALCRS 665 (1008)
Q Consensus 616 ~~~~~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~aL~~L~~~ 665 (1008)
..+..... .+ -..++..|+..-+...+.....+-.+|..|..+
T Consensus 403 ~rs~~~~~------~~-l~~GiE~Li~~A~~~h~tce~~akaALRDLGc~ 445 (461)
T KOG4199|consen 403 VRSAENRT------IL-LANGIEKLIRTAKANHETCEAAAKAALRDLGCD 445 (461)
T ss_pred Hhhhhccc------hH-HhccHHHHHHHHHhcCccHHHHHHHHHHhcCcc
Confidence 86544332 22 245777888877777777777777777776543
No 16
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.63 E-value=1.7e-13 Score=146.20 Aligned_cols=380 Identities=18% Similarity=0.191 Sum_probs=296.1
Q ss_pred hHHHHHHHHHHHhhcCCcccHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHHcCChhhHHHHhhcCcHHHHHHHhcc
Q 001833 475 NQASRDAQELLENLSFSDDNVVQMAKANYFKHLLQRLSAGPESVKMRMATTLAEMELTDHHKASLLEGNVLGPLLHLVSR 554 (1008)
Q Consensus 475 ~~~~~~a~~aL~~Ls~~~~n~~~i~~~g~v~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~ 554 (1008)
......|+..|.||+.+-..-..|.+..+|..|++.|...+.++.......|..|+-.+++|..+++.|++..|+++...
T Consensus 277 eqLLrva~ylLlNlAed~~~ElKMrrkniV~mLVKaLdr~n~~Ll~lv~~FLkKLSIf~eNK~~M~~~~iveKL~klfp~ 356 (791)
T KOG1222|consen 277 EQLLRVAVYLLLNLAEDISVELKMRRKNIVAMLVKALDRSNSSLLTLVIKFLKKLSIFDENKIVMEQNGIVEKLLKLFPI 356 (791)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHhHHHHHHHHHcccchHHHHHHHHHHHHhhhhccchHHHHhccHHHHHHHhcCC
Confidence 34566788999999998888889999999999999999988888888999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhhCCCchhHHHHhcCChHHHHHHhcccCCCCcchHHHHHHHHHHHhccccccccCCcccccccch
Q 001833 555 GDIQMKKVAVKALRNLSSVPQNGLQMIKEGAVGPLVDLLLHHSSSSSSLREETATAIMHLAVSTMYQESSQTPVTLLESD 634 (1008)
Q Consensus 555 ~~~~~~~~A~~aL~~L~~~~~~~~~i~~~G~v~~Ll~ll~~~~~~~~~~~~~a~~~L~nLa~~~~~~~~~~~~~~~l~~~ 634 (1008)
.++..+...+..|+|++-+..++.+|+..|.+|.|..++.+.+ -..-|+.+|+.++.++.... .+...
T Consensus 357 ~h~dL~~~tl~LlfNlSFD~glr~KMv~~GllP~l~~ll~~d~-----~~~iA~~~lYh~S~dD~~K~-------MfayT 424 (791)
T KOG1222|consen 357 QHPDLRKATLMLLFNLSFDSGLRPKMVNGGLLPHLASLLDSDT-----KHGIALNMLYHLSCDDDAKA-------MFAYT 424 (791)
T ss_pred CCHHHHHHHHHHhhhccccccccHHHhhccchHHHHHHhCCcc-----cchhhhhhhhhhccCcHHHH-------HHHHH
Confidence 9999999999999999999999999999999999999998654 35678899999988765443 56677
Q ss_pred hHHHHHHHhhc-cCChHHHHHHHHHHHHhccCCChhhHHHHhhhcCChHHHHHhhc-cCChhHHHHHHHHHHHhccCCCh
Q 001833 635 KEIFMLFSLIN-LTGPNVQQRILQTFNALCRSPSAGNIKTTLTQCSAIPVLVQLCE-HDNENVRANAVKLFCCLVDDGDE 712 (1008)
Q Consensus 635 ~~i~~L~~ll~-~~~~~v~~~al~aL~~L~~~~~~~~~~~~i~e~~~i~~Lv~ll~-~~~~~v~~~a~~~L~~Ls~~~~~ 712 (1008)
++|+.++..+- ..+..+-...+....|||-+. ...+.+.+..++..|.+.-- ..++ + ..+.+.+++ .+..
T Consensus 425 dci~~lmk~v~~~~~~~vdl~lia~ciNl~lnk---RNaQlvceGqgL~~LM~ra~k~~D~-l---LmK~vRniS-qHeg 496 (791)
T KOG1222|consen 425 DCIKLLMKDVLSGTGSEVDLALIALCINLCLNK---RNAQLVCEGQGLDLLMERAIKSRDL-L---LMKVVRNIS-QHEG 496 (791)
T ss_pred HHHHHHHHHHHhcCCceecHHHHHHHHHHHhcc---ccceEEecCcchHHHHHHHhcccch-H---HHHHHHHhh-hccc
Confidence 88998888655 556666666666667887643 33445667777888776543 3333 2 245677887 4444
Q ss_pred hHHHhhhcccchHHHHHHhcCCCCHHHHHHHHHHHhcCCC-ChhhHHHHHhcCCHHHHHHHhhCCCCCCCchhhHHHHHH
Q 001833 713 AIIREHVGQKCLETLVTIIQSSHNEEEIASAMGILSKLPE-VPQFTQWLLDAGALPIVLNFLKNGRQNDPNRFQVVENAV 791 (1008)
Q Consensus 713 ~~~~~~~~~~~i~~Lv~lL~~~~~~~v~~~a~~~L~nL~~-~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~v~~~a~ 791 (1008)
.....++ ..+..|...+....+......++++++||.- +-+-...+.....+|.+-..|..+. ...+++...+
T Consensus 497 ~tqn~Fi--dyvgdLa~i~~nd~~E~F~~EClGtlanL~v~dldw~~ilq~~~LvPw~k~~L~pga----~eddLvL~~v 570 (791)
T KOG1222|consen 497 ATQNMFI--DYVGDLAGIAKNDNSESFGLECLGTLANLKVTDLDWAKILQSENLVPWMKTQLQPGA----DEDDLVLQIV 570 (791)
T ss_pred hHHHHHH--HHHHHHHHHhhcCchHHHHHHHHHHHhhcccCCCCHHHHHhhccccHHHHHhhcCCc----cchhhhhHHH
Confidence 4444444 4677888888887777788899999999987 6667777888999999999999876 3456888888
Q ss_pred HHHHHhcCCCCHHHHHHHHHcCChHHHHHHhhcC--ChHHHHHHHHHHhhhhhcCCCCCCCCCCCCcccccCCCCCCccc
Q 001833 792 GALRRFTAPTNLEWQKRAAEAGVIPKLVQLLEYG--TTLTKEHAATSLARFSKNSLGLSRPIPKRKGFWCFSPPPEIGCQ 869 (1008)
Q Consensus 792 ~aL~~L~~~~~~~~~~~l~~~g~l~~Lv~lL~~~--~~~v~~~Aa~aL~nLs~~~~~l~~~~~~~~g~~~~~~~~~~~c~ 869 (1008)
-+++.++. +......+..+++++.|+++|... +.+...........+..+..
T Consensus 571 i~~GT~a~--d~~cA~Lla~a~~i~tlieLL~a~QeDDEfV~QiiyVF~Q~l~He~------------------------ 624 (791)
T KOG1222|consen 571 IACGTMAR--DLDCARLLAPAKLIDTLIELLQACQEDDEFVVQIIYVFLQFLKHEL------------------------ 624 (791)
T ss_pred HHhhhhhh--hhHHHHHhCccccHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHH------------------------
Confidence 88999888 688888889999999999999863 33444444445555543211
Q ss_pred ccCcccCcccchhHhhc-cchHHHHHhhcCCChhhhHHHHHHHHhhh
Q 001833 870 VHGGLCGIESSFCLLEA-NAVRPLVRVLEDPDHGACEASLDALVTLI 915 (1008)
Q Consensus 870 vh~~~c~~~~~~~l~~~-g~i~~Lv~lL~~~d~~v~~~al~aL~~L~ 915 (1008)
.+..++.. ..-..|++++++.+.++|+.+-.+|--+.
T Consensus 625 ---------tr~~miket~~~AylIDLMHDkN~eiRkVCDn~LdIia 662 (791)
T KOG1222|consen 625 ---------TRRLMIKETALGAYLIDLMHDKNAEIRKVCDNALDIIA 662 (791)
T ss_pred ---------HHHHHHhhccchHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 11223333 34456889999999999988888888777
No 17
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=99.62 E-value=1e-12 Score=139.07 Aligned_cols=446 Identities=13% Similarity=0.129 Sum_probs=316.0
Q ss_pred hhhhhhhccCcchHHHHHHHHHHHHHHhhchhhhhhHhhcCchHHHHHHHcC----CC---HHHHHHHHHHHHHhccCCh
Q 001833 337 IASMKPKLVSTEVEEVLHCLEQLQDLCQQRDQHREWVILENYIPKLIYLLGS----KN---RDVRNRALIILHILVKDSN 409 (1008)
Q Consensus 337 ~~~~~~~l~~~~~~~~~~al~~L~~l~~~~~~~r~~i~~~g~i~~L~~lL~s----~~---~~~~~~Al~~L~~Ls~~~~ 409 (1008)
++.+++...|.+.+...++.+.|.+.|.++.++|..+.+.|+-..+++.|+. .+ .+.-.-+...|.|-..+++
T Consensus 89 le~Lrq~psS~d~ev~~Q~~RaLgNiCydn~E~R~a~~~lgGaqivid~L~~~cs~d~~ane~~~~v~~g~l~Ny~l~~~ 168 (604)
T KOG4500|consen 89 LELLRQTPSSPDTEVHEQCFRALGNICYDNNENRAAFFNLGGAQIVIDVLKPYCSKDNPANEEYSAVAFGVLHNYILDSR 168 (604)
T ss_pred HHHHHhCCCCCcccHHHHHHHHHhhhhccCchhHHHHHhcCCceehHhhhccccccCCccHHHHHHHHHHHHHHhhCCcH
Confidence 3445555566667788899999999999999999999999998888888875 12 2333444578888888888
Q ss_pred hhHHHhhccCCcHHHHHHHhccCh---hHHHHHHHHHHHhcc-CchhhHHhhcccchHHHHHHHhcC-CChHHHHHHHHH
Q 001833 410 DTKERLANGDDAVESIVRSLGRRI---EERKLAVALLLELST-CNTLRDQIGDVQGCILLLVTMASS-DDNQASRDAQEL 484 (1008)
Q Consensus 410 ~~k~~i~~~~g~i~~Lv~~L~~~~---~~~~~A~~~L~~Ls~-~~~~~~~i~~~~g~i~~Lv~lL~~-~~~~~~~~a~~a 484 (1008)
+-+.+.++ .|.++.|+..+.-+. +.-+......++|.. ..++-..+.........|++++.+ -.+...+.....
T Consensus 169 ~l~aq~~~-~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~e~~~~~~~d~sl~~~l~~ll~~~v~~d~~eM~fei 247 (604)
T KOG4500|consen 169 ELRAQVAD-AGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFVCEMLYPFCKDCSLVFMLLQLLPSMVREDIDEMIFEI 247 (604)
T ss_pred HHHHHHHh-cccHHHHHHHhhcccccHHHHHHHHhccccHHHHHHHhhhhhhccchHHHHHHHHHHHhhccchhhHHHHH
Confidence 88999999 999999999885432 222333333333322 222222222235667778888874 467788888999
Q ss_pred HHhhcCCcccHHHHHhcCcHHHHHHHHhcC-CHHHH-------HHHHHHHHHHcCChhhHHHHhhcC-cHHHHHHHhccC
Q 001833 485 LENLSFSDDNVVQMAKANYFKHLLQRLSAG-PESVK-------MRMATTLAEMELTDHHKASLLEGN-VLGPLLHLVSRG 555 (1008)
Q Consensus 485 L~~Ls~~~~n~~~i~~~g~v~~Lv~~L~~~-~~~~~-------~~aa~~L~~Ls~~~~~k~~i~~~g-~i~~Lv~lL~~~ 555 (1008)
|...+.++..+..+++.|.+.-++.+++.- +..-+ ..++....-+...|+.-..+...+ ++..++.++++.
T Consensus 248 la~~aend~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vllltGDeSMq~L~~~p~~l~~~~sw~~S~ 327 (604)
T KOG4500|consen 248 LAKAAENDLVKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLLLTGDESMQKLHADPQFLDFLESWFRSD 327 (604)
T ss_pred HHHHhcCcceeeehhhcchHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhhhcCchHHHHHhcCcHHHHHHHHHhcCC
Confidence 999999999999999999999999998763 11111 223333334455666666676666 889999999999
Q ss_pred CHHHHHHHHHHHHHhhCCCchhHHHHhcCChHHHHHHhcccC--CCCcchHHHHHHHHHHHhccccccccCCcccccccc
Q 001833 556 DIQMKKVAVKALRNLSSVPQNGLQMIKEGAVGPLVDLLLHHS--SSSSSLREETATAIMHLAVSTMYQESSQTPVTLLES 633 (1008)
Q Consensus 556 ~~~~~~~A~~aL~~L~~~~~~~~~i~~~G~v~~Ll~ll~~~~--~~~~~~~~~a~~~L~nLa~~~~~~~~~~~~~~~l~~ 633 (1008)
+....-.+.-+|+|+++.+.++..+++.|.+..|++++.... ++..+.+..++.+|+|+.-.
T Consensus 328 d~~l~t~g~LaigNfaR~D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IP---------------- 391 (604)
T KOG4500|consen 328 DSNLITMGSLAIGNFARRDDICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMIP---------------- 391 (604)
T ss_pred chhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhcccc----------------
Confidence 999999999999999999999999999999999999997533 23355667777777777542
Q ss_pred hhHHHHHHHhhccCChHHHHHHHHHHHHhccCCChhhHHHHhhhcCChHHHHHhhccCChhHHHHHHHHHHHhccCCChh
Q 001833 634 DKEIFMLFSLINLTGPNVQQRILQTFNALCRSPSAGNIKTTLTQCSAIPVLVQLCEHDNENVRANAVKLFCCLVDDGDEA 713 (1008)
Q Consensus 634 ~~~i~~L~~ll~~~~~~v~~~al~aL~~L~~~~~~~~~~~~i~e~~~i~~Lv~ll~~~~~~v~~~a~~~L~~Ls~~~~~~ 713 (1008)
...+..+...|..+.++.+++...|.+...-...+..+. ++.+.
T Consensus 392 -----------------------------------v~nka~~~~aGvteaIL~~lk~~~ppv~fkllgTlrM~~-d~qe~ 435 (604)
T KOG4500|consen 392 -----------------------------------VSNKAHFAPAGVTEAILLQLKLASPPVTFKLLGTLRMIR-DSQEY 435 (604)
T ss_pred -----------------------------------CCchhhccccchHHHHHHHHHhcCCcchHHHHHHHHHHH-hchHH
Confidence 223445566677777788887777777777777777775 33332
Q ss_pred HHHhh-hcccchHHHHHHhcCCCCHHHHHHHHHHHhcCCC---ChhhHHHHHhcCCHHHHHHHhhCCCCCCCchhhHHHH
Q 001833 714 IIREH-VGQKCLETLVTIIQSSHNEEEIASAMGILSKLPE---VPQFTQWLLDAGALPIVLNFLKNGRQNDPNRFQVVEN 789 (1008)
Q Consensus 714 ~~~~~-~~~~~i~~Lv~lL~~~~~~~v~~~a~~~L~nL~~---~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~v~~~ 789 (1008)
...+. .....+.+|++..++++...+.-...+.+..+.. ..+....+.+.|++...+..+.. ..-.++.+
T Consensus 436 ~a~eL~kn~~l~ekLv~Wsks~D~aGv~gESnRll~~lIkHs~~kdv~~tvpksg~ik~~Vsm~t~------~hi~mqnE 509 (604)
T KOG4500|consen 436 IACELAKNPELFEKLVDWSKSPDFAGVAGESNRLLLGLIKHSKYKDVILTVPKSGGIKEKVSMFTK------NHINMQNE 509 (604)
T ss_pred HHHHHhcCHHHHHHHHHhhhCCccchhhhhhhHHHHHHHHhhHhhhhHhhccccccHHHHHHHHHH------hhHHHhHH
Confidence 22222 2335688888888887655566677777777765 44556677889999999999988 67788999
Q ss_pred HHHHHHHhcCCC----C-----HHHHHHHHHcCChHHHHHHhhcCChHHHHHHHHHHhhhh
Q 001833 790 AVGALRRFTAPT----N-----LEWQKRAAEAGVIPKLVQLLEYGTTLTKEHAATSLARFS 841 (1008)
Q Consensus 790 a~~aL~~L~~~~----~-----~~~~~~l~~~g~l~~Lv~lL~~~~~~v~~~Aa~aL~nLs 841 (1008)
|+-+|+-+..-+ . .-.+..++++|.-...-.++.+++...-+.-...+.|+.
T Consensus 510 alVal~~~~~~yl~~~~kd~ea~~l~~~lik~~~~~~~a~~I~~~s~~~~k~~~E~l~n~v 570 (604)
T KOG4500|consen 510 ALVALLSTESKYLIVIGKDLEAVFLAILLIKHGYANVAATIIASPSYEALKSYREDLPNLV 570 (604)
T ss_pred HHHHHHHHHHHhccccchhHHHHHHHHHHHHhhhhhhhhHHhcCcHHHHHHHHHHhhHHHH
Confidence 998888776431 1 113455667777777777776665544444445666655
No 18
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.62 E-value=3.7e-13 Score=138.24 Aligned_cols=330 Identities=15% Similarity=0.168 Sum_probs=253.5
Q ss_pred hcCcHHHHHHHHh---cCCHHHHHHHHHHHHHHcCChhhHHHHhhcCcHHHHHHHhccC--CHHHHHHHHHHHHHhhC-C
Q 001833 500 KANYFKHLLQRLS---AGPESVKMRMATTLAEMELTDHHKASLLEGNVLGPLLHLVSRG--DIQMKKVAVKALRNLSS-V 573 (1008)
Q Consensus 500 ~~g~v~~Lv~~L~---~~~~~~~~~aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~--~~~~~~~A~~aL~~L~~-~ 573 (1008)
..|..+.++..+. +++..+...++.+|..+.. ....+.+..+...++++|... +..+....+..+..-|. +
T Consensus 102 ~~ga~~~~it~~~la~~~~~~~l~ksL~al~~lt~---~qpdl~da~g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~h 178 (461)
T KOG4199|consen 102 KNGAHDALITLLELAESPNESVLKKSLEAINSLTH---KQPDLFDAEAMAVVLKLLALKVESEEVTLLTLQWLQKACIMH 178 (461)
T ss_pred cCCCcchhhhHHHHhhCCchhHHHHHHHHHHHhhc---CCcchhccccHHHHHHHHhcccchHHHHHHHHHHHHHHHHHh
Confidence 4555555554432 3344455566666665533 223467788888999988654 55677777888888884 7
Q ss_pred CchhHHHHhcCChHHHHHHhcccCCCCcchHHHHHHHHHHHhccccccccCCcccccccchhHHHHHHHhhccCChHHHH
Q 001833 574 PQNGLQMIKEGAVGPLVDLLLHHSSSSSSLREETATAIMHLAVSTMYQESSQTPVTLLESDKEIFMLFSLINLTGPNVQQ 653 (1008)
Q Consensus 574 ~~~~~~i~~~G~v~~Ll~ll~~~~~~~~~~~~~a~~~L~nLa~~~~~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~ 653 (1008)
.-||+.+++.++.+.+...+..... ..+.+.+.|+++-|..+++.|-. +.
T Consensus 179 E~nrQ~~m~~~il~Li~~~l~~~gk--~~~VRel~~a~r~l~~dDDiRV~-------fg--------------------- 228 (461)
T KOG4199|consen 179 EVNRQLFMELKILELILQVLNREGK--TRTVRELYDAIRALLTDDDIRVV-------FG--------------------- 228 (461)
T ss_pred HHHHHHHHHhhHHHHHHHHHcccCc--cHHHHHHHHHHHHhcCCCceeee-------cc---------------------
Confidence 7899999999999999988875443 35788999999999887765542 00
Q ss_pred HHHHHHHHhccCCChhhHHHHhhhcCChHHHHHhhccC-ChhHHHHHHHHHHHhccCCChhHHHhhhcccchHHHHHHhc
Q 001833 654 RILQTFNALCRSPSAGNIKTTLTQCSAIPVLVQLCEHD-NENVRANAVKLFCCLVDDGDEAIIREHVGQKCLETLVTIIQ 732 (1008)
Q Consensus 654 ~al~aL~~L~~~~~~~~~~~~i~e~~~i~~Lv~ll~~~-~~~v~~~a~~~L~~Ls~~~~~~~~~~~~~~~~i~~Lv~lL~ 732 (1008)
....-.+.+...|++..|++.++.. +|.+...++.+|..|+ -.++.++.+.+.|++..|++++.
T Consensus 229 -------------~ah~hAr~ia~e~~l~~L~Eal~A~~dp~~L~~l~~tl~~lA--Vr~E~C~~I~e~GGl~tl~~~i~ 293 (461)
T KOG4199|consen 229 -------------QAHGHARTIAKEGILTALTEALQAGIDPDSLVSLSTTLKALA--VRDEICKSIAESGGLDTLLRCID 293 (461)
T ss_pred -------------hhhHHHHHHHHhhhHHHHHHHHHccCCccHHHHHHHHHHHHH--HHHHHHHHHHHccCHHHHHHHHh
Confidence 0111122334446789999999876 7999999999999996 34678888899999999999999
Q ss_pred CCCCHHHH---HHHHHHHhcCCCChhhHHHHHhcCCHHHHHHHhhCCCCCCCchhhHHHHHHHHHHHhcCCCCHHHHHHH
Q 001833 733 SSHNEEEI---ASAMGILSKLPEVPQFTQWLLDAGALPIVLNFLKNGRQNDPNRFQVVENAVGALRRFTAPTNLEWQKRA 809 (1008)
Q Consensus 733 ~~~~~~v~---~~a~~~L~nL~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~v~~~a~~aL~~L~~~~~~~~~~~l 809 (1008)
++.+...+ ..++..|..|+.++.....|++.|+.+.++.++..-. .++.+.+.++.+++-|+-. .|+....+
T Consensus 294 d~n~~~~r~l~k~~lslLralAG~DsvKs~IV~~gg~~~ii~l~~~h~----~~p~Vi~~~~a~i~~l~LR-~pdhsa~~ 368 (461)
T KOG4199|consen 294 DSNEQGNRTLAKTCLSLLRALAGSDSVKSTIVEKGGLDKIITLALRHS----DDPLVIQEVMAIISILCLR-SPDHSAKA 368 (461)
T ss_pred hhchhhHHHHHHHHHHHHHHHhCCCchHHHHHHhcChHHHHHHHHHcC----CChHHHHHHHHHHHHHHhc-CcchHHHH
Confidence 86544444 5678888999999999999999999999999988733 5788999999999999987 89999999
Q ss_pred HHcCChHHHHHHhhcC--ChHHHHHHHHHHhhhhhcCCCCCCCCCCCCcccccCCCCCCcccccCcccCcccchhHhhcc
Q 001833 810 AEAGVIPKLVQLLEYG--TTLTKEHAATSLARFSKNSLGLSRPIPKRKGFWCFSPPPEIGCQVHGGLCGIESSFCLLEAN 887 (1008)
Q Consensus 810 ~~~g~l~~Lv~lL~~~--~~~v~~~Aa~aL~nLs~~~~~l~~~~~~~~g~~~~~~~~~~~c~vh~~~c~~~~~~~l~~~g 887 (1008)
++.|+-...++-++.. ...+|++|||.+.|+...+...+++ +-..
T Consensus 369 ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs~~~~~~---------------------------------~l~~ 415 (461)
T KOG4199|consen 369 IEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVRSAENRTI---------------------------------LLAN 415 (461)
T ss_pred HhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhhhhccch---------------------------------HHhc
Confidence 9999999999999854 3499999999999999665543332 3455
Q ss_pred chHHHHHhhcCCChhhhHHHHHHHHhhh
Q 001833 888 AVRPLVRVLEDPDHGACEASLDALVTLI 915 (1008)
Q Consensus 888 ~i~~Lv~lL~~~d~~v~~~al~aL~~L~ 915 (1008)
+++.|+..-...++.....|-.||..|-
T Consensus 416 GiE~Li~~A~~~h~tce~~akaALRDLG 443 (461)
T KOG4199|consen 416 GIEKLIRTAKANHETCEAAAKAALRDLG 443 (461)
T ss_pred cHHHHHHHHHhcCccHHHHHHHHHHhcC
Confidence 7899999888888888888888998887
No 19
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=99.61 E-value=4.9e-16 Score=127.57 Aligned_cols=63 Identities=48% Similarity=0.805 Sum_probs=60.3
Q ss_pred cccccccccccCCceeccCcccccHHHHHHHHhcCCCCCCCcCccCCCCCCccCHhhHHHHHHH
Q 001833 265 SFYCPITRDVMVDPVETSSGQTFERSAIEKWFSDGNNLCPLTMTVLDTSILRPNKTLRQSIEEW 328 (1008)
Q Consensus 265 ~~~cpi~~~~m~dpv~~~~g~t~~r~~i~~w~~~~~~~cp~~~~~l~~~~l~pN~~l~~~I~~w 328 (1008)
+|.||||+++|.|||+++|||+|||.+|.+|+.. +.+||.|+++++..+++||..||+.|++|
T Consensus 1 ~~~Cpi~~~~~~~Pv~~~~G~v~~~~~i~~~~~~-~~~cP~~~~~~~~~~l~~~~~l~~~i~~~ 63 (63)
T smart00504 1 EFLCPISLEVMKDPVILPSGQTYERRAIEKWLLS-HGTDPVTGQPLTHEDLIPNLALKSAIQEW 63 (63)
T ss_pred CcCCcCCCCcCCCCEECCCCCEEeHHHHHHHHHH-CCCCCCCcCCCChhhceeCHHHHHHHHhC
Confidence 5899999999999999999999999999999977 66899999999999999999999999998
No 20
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=99.60 E-value=1.5e-12 Score=137.78 Aligned_cols=459 Identities=15% Similarity=0.076 Sum_probs=318.1
Q ss_pred HHHHHHHHHHHhccCchhhHHhhcc---cchHHHHHHHhcCCChHHHHHHHHHHHhhcC-CcccHHHHHhcCcHHHHHHH
Q 001833 435 ERKLAVALLLELSTCNTLRDQIGDV---QGCILLLVTMASSDDNQASRDAQELLENLSF-SDDNVVQMAKANYFKHLLQR 510 (1008)
Q Consensus 435 ~~~~A~~~L~~Ls~~~~~~~~i~~~---~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~-~~~n~~~i~~~g~v~~Lv~~ 510 (1008)
.+..+..++...++++--|..|.+. .|+++.|++...++|.++.....++|.|+|. ++++|..+.+.|+-..++++
T Consensus 58 v~~~qssC~A~~sk~ev~r~~F~~~~I~a~~le~Lrq~psS~d~ev~~Q~~RaLgNiCydn~E~R~a~~~lgGaqivid~ 137 (604)
T KOG4500|consen 58 VYLFQSSCLADRSKNEVERSLFRNYCIDAEALELLRQTPSSPDTEVHEQCFRALGNICYDNNENRAAFFNLGGAQIVIDV 137 (604)
T ss_pred hhhhhHHHHHHHhhhHHHHHHHHHHhhHHHHHHHHHhCCCCCcccHHHHHHHHHhhhhccCchhHHHHHhcCCceehHhh
Confidence 3445555666666666555555432 5788888888889999999999999999996 78899999999998888888
Q ss_pred HhcC----C---HHHHHHHHHHHHHHc-CChhhHHHHhhcCcHHHHHHHhccC--CHHHHHHHHHHHHHhhCC-Cch-hH
Q 001833 511 LSAG----P---ESVKMRMATTLAEME-LTDHHKASLLEGNVLGPLLHLVSRG--DIQMKKVAVKALRNLSSV-PQN-GL 578 (1008)
Q Consensus 511 L~~~----~---~~~~~~aa~~L~~Ls-~~~~~k~~i~~~g~i~~Lv~lL~~~--~~~~~~~A~~aL~~L~~~-~~~-~~ 578 (1008)
|+.. + .+.-.-+.+.|.|-. .+++.+....+.|+++.|..++.-+ +....+......+||.+. .++ ..
T Consensus 138 L~~~cs~d~~ane~~~~v~~g~l~Ny~l~~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~e~~~~ 217 (604)
T KOG4500|consen 138 LKPYCSKDNPANEEYSAVAFGVLHNYILDSRELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFVCEMLYP 217 (604)
T ss_pred hccccccCCccHHHHHHHHHHHHHHhhCCcHHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHHHHHHhhhh
Confidence 7643 2 233344555666654 4567788899999999999887544 455666677777777541 122 22
Q ss_pred HHHhcCChHHHHHHhcccCCCCcchHHHHHHHHHHHhccccccccCCcccccccchhHHHHHHHhhcc-CC----hHH--
Q 001833 579 QMIKEGAVGPLVDLLLHHSSSSSSLREETATAIMHLAVSTMYQESSQTPVTLLESDKEIFMLFSLINL-TG----PNV-- 651 (1008)
Q Consensus 579 ~i~~~G~v~~Ll~ll~~~~~~~~~~~~~a~~~L~nLa~~~~~~~~~~~~~~~l~~~~~i~~L~~ll~~-~~----~~v-- 651 (1008)
...+...+-.+++++.+... +.+.+.+..+|+..++++...- .+...|.+..++.++.. .+ .+.
T Consensus 218 ~~~d~sl~~~l~~ll~~~v~--~d~~eM~feila~~aend~Vkl-------~la~~gl~e~~~~lv~~~k~~t~k~d~~~ 288 (604)
T KOG4500|consen 218 FCKDCSLVFMLLQLLPSMVR--EDIDEMIFEILAKAAENDLVKL-------SLAQNGLLEDSIDLVRNMKDFTKKTDMLN 288 (604)
T ss_pred hhccchHHHHHHHHHHHhhc--cchhhHHHHHHHHHhcCcceee-------ehhhcchHHHHHHHHHhcccccchHHHHH
Confidence 23455677788888876543 5688999999999998775443 35556667777777663 11 111
Q ss_pred -HHHHHHHHHHhccCCChhhHHHHhhhcC-ChHHHHHhhccCChhHHHHHHHHHHHhccCCChhHHHhhhcccchHHHHH
Q 001833 652 -QQRILQTFNALCRSPSAGNIKTTLTQCS-AIPVLVQLCEHDNENVRANAVKLFCCLVDDGDEAIIREHVGQKCLETLVT 729 (1008)
Q Consensus 652 -~~~al~aL~~L~~~~~~~~~~~~i~e~~-~i~~Lv~ll~~~~~~v~~~a~~~L~~Ls~~~~~~~~~~~~~~~~i~~Lv~ 729 (1008)
...+.....-+.. +++.-..+.+.+ ++..+..++.+++.+....+.-+++|+++ .++.+..+++.+.+..|+.
T Consensus 289 l~k~~~el~vlllt---GDeSMq~L~~~p~~l~~~~sw~~S~d~~l~t~g~LaigNfaR--~D~~ci~~v~~~~~nkL~~ 363 (604)
T KOG4500|consen 289 LFKRIAELDVLLLT---GDESMQKLHADPQFLDFLESWFRSDDSNLITMGSLAIGNFAR--RDDICIQLVQKDFLNKLIS 363 (604)
T ss_pred HHHhhhhHhhhhhc---CchHHHHHhcCcHHHHHHHHHhcCCchhHHHHHHHHHHhhhc--cchHHHHHHHHHHHHHHHH
Confidence 1122222222222 233344455555 78889999999999999999999999973 3456667788899999999
Q ss_pred HhcCC----CCHHHHHHHHHHHhcCCCChhhHHHHHhcCCHHHHHHHhhCCCCCCCchhhHHHHHHHHHHHhcCCCCHHH
Q 001833 730 IIQSS----HNEEEIASAMGILSKLPEVPQFTQWLLDAGALPIVLNFLKNGRQNDPNRFQVVENAVGALRRFTAPTNLEW 805 (1008)
Q Consensus 730 lL~~~----~~~~v~~~a~~~L~nL~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~v~~~a~~aL~~L~~~~~~~~ 805 (1008)
+|... .+.+.+.+++.+|.|+.-...++..+..+|+.+.++..++. ..++++-...+++.-+..+ -+..
T Consensus 364 ~l~~~~~vdgnV~~qhA~lsALRnl~IPv~nka~~~~aGvteaIL~~lk~------~~ppv~fkllgTlrM~~d~-qe~~ 436 (604)
T KOG4500|consen 364 CLMQEKDVDGNVERQHACLSALRNLMIPVSNKAHFAPAGVTEAILLQLKL------ASPPVTFKLLGTLRMIRDS-QEYI 436 (604)
T ss_pred HHHHhcCCCccchhHHHHHHHHHhccccCCchhhccccchHHHHHHHHHh------cCCcchHHHHHHHHHHHhc-hHHH
Confidence 98763 45678899999999999877777888999999999999999 6788898899988877764 3334
Q ss_pred HHHHHH-cCChHHHHHHhhcCCh-HHHHHHHHHHhhhhhcCCCCCCCCCCCCcccccCCCCCCcccccCcccCcccchhH
Q 001833 806 QKRAAE-AGVIPKLVQLLEYGTT-LTKEHAATSLARFSKNSLGLSRPIPKRKGFWCFSPPPEIGCQVHGGLCGIESSFCL 883 (1008)
Q Consensus 806 ~~~l~~-~g~l~~Lv~lL~~~~~-~v~~~Aa~aL~nLs~~~~~l~~~~~~~~g~~~~~~~~~~~c~vh~~~c~~~~~~~l 883 (1008)
...+.+ ...+..|++.-++++. .+-.+.-+.+.-|..++.. .+-+..+
T Consensus 437 a~eL~kn~~l~ekLv~Wsks~D~aGv~gESnRll~~lIkHs~~------------------------------kdv~~tv 486 (604)
T KOG4500|consen 437 ACELAKNPELFEKLVDWSKSPDFAGVAGESNRLLLGLIKHSKY------------------------------KDVILTV 486 (604)
T ss_pred HHHHhcCHHHHHHHHHhhhCCccchhhhhhhHHHHHHHHhhHh------------------------------hhhHhhc
Confidence 334433 3556667777777665 5777777777777654321 1223345
Q ss_pred hhccchHHHHHhhcCCChhhhHHHHHHHHhhh--ccccc------chhhHHHHhcCchHHHHHHhcCCC
Q 001833 884 LEANAVRPLVRVLEDPDHGACEASLDALVTLI--EGERL------QNGSKVLEDANAIDRMVRFLSSPS 944 (1008)
Q Consensus 884 ~~~g~i~~Lv~lL~~~d~~v~~~al~aL~~L~--~~~~~------~~~~~~i~~~~~i~~l~~ll~~~~ 944 (1008)
...|+|+.++.++...+...+..|+-||+.+. ..... .-....+.++|.-.....++.+++
T Consensus 487 pksg~ik~~Vsm~t~~hi~mqnEalVal~~~~~~yl~~~~kd~ea~~l~~~lik~~~~~~~a~~I~~~s 555 (604)
T KOG4500|consen 487 PKSGGIKEKVSMFTKNHINMQNEALVALLSTESKYLIVIGKDLEAVFLAILLIKHGYANVAATIIASPS 555 (604)
T ss_pred cccccHHHHHHHHHHhhHHHhHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhhhhhhhhHHhcCcH
Confidence 56667999999999988889998988888776 11111 112344555555555555555444
No 21
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.57 E-value=3.9e-12 Score=136.10 Aligned_cols=384 Identities=13% Similarity=0.156 Sum_probs=298.6
Q ss_pred HHHHHHHHHHHhccCchhhHHhhcccchHHHHHHHhcCCChHHHHHHHHHHHhhcCCcccHHHHHhcCcHHHHHHHHhcC
Q 001833 435 ERKLAVALLLELSTCNTLRDQIGDVQGCILLLVTMASSDDNQASRDAQELLENLSFSDDNVVQMAKANYFKHLLQRLSAG 514 (1008)
Q Consensus 435 ~~~~A~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~~~n~~~i~~~g~v~~Lv~~L~~~ 514 (1008)
..+.|.-+|.+|+.+-..-.++.+ ...+..||..|.-++.+........|..|+...+|+..|.+.|.|..|++++...
T Consensus 279 LLrva~ylLlNlAed~~~ElKMrr-kniV~mLVKaLdr~n~~Ll~lv~~FLkKLSIf~eNK~~M~~~~iveKL~klfp~~ 357 (791)
T KOG1222|consen 279 LLRVAVYLLLNLAEDISVELKMRR-KNIVAMLVKALDRSNSSLLTLVIKFLKKLSIFDENKIVMEQNGIVEKLLKLFPIQ 357 (791)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHH-HhHHHHHHHHHcccchHHHHHHHHHHHHhhhhccchHHHHhccHHHHHHHhcCCC
Confidence 345677889999987776666665 6889999999998888889999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHcCChhhHHHHhhcCcHHHHHHHhccCCHHHHHHHHHHHHHhhCCCchhHHHHhcCChHHHHHHhc
Q 001833 515 PESVKMRMATTLAEMELTDHHKASLLEGNVLGPLLHLVSRGDIQMKKVAVKALRNLSSVPQNGLQMIKEGAVGPLVDLLL 594 (1008)
Q Consensus 515 ~~~~~~~aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~~~~~~~i~~~G~v~~Ll~ll~ 594 (1008)
.++++...+..|++++.....+..+++.|.+|.|+.++.+.+ -...|+..|..++.++..+..+.....|+.+...+.
T Consensus 358 h~dL~~~tl~LlfNlSFD~glr~KMv~~GllP~l~~ll~~d~--~~~iA~~~lYh~S~dD~~K~MfayTdci~~lmk~v~ 435 (791)
T KOG1222|consen 358 HPDLRKATLMLLFNLSFDSGLRPKMVNGGLLPHLASLLDSDT--KHGIALNMLYHLSCDDDAKAMFAYTDCIKLLMKDVL 435 (791)
T ss_pred CHHHHHHHHHHhhhccccccccHHHhhccchHHHHHHhCCcc--cchhhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999997654 345688999999999999999988899999999888
Q ss_pred ccCCCCcchHHHHHHHHHHHhccccccccCCcccccccchhHHHHHHHhh-ccCChHHHHHHHHHHHHhccCCChhhHHH
Q 001833 595 HHSSSSSSLREETATAIMHLAVSTMYQESSQTPVTLLESDKEIFMLFSLI-NLTGPNVQQRILQTFNALCRSPSAGNIKT 673 (1008)
Q Consensus 595 ~~~~~~~~~~~~a~~~L~nLa~~~~~~~~~~~~~~~l~~~~~i~~L~~ll-~~~~~~v~~~al~aL~~L~~~~~~~~~~~ 673 (1008)
.++.. .+-......-.||+-+.-. ++++....++..|+..- +..++- ....+.+++.+... .+.
T Consensus 436 ~~~~~--~vdl~lia~ciNl~lnkRN-------aQlvceGqgL~~LM~ra~k~~D~l----LmK~vRniSqHeg~--tqn 500 (791)
T KOG1222|consen 436 SGTGS--EVDLALIALCINLCLNKRN-------AQLVCEGQGLDLLMERAIKSRDLL----LMKVVRNISQHEGA--TQN 500 (791)
T ss_pred hcCCc--eecHHHHHHHHHHHhcccc-------ceEEecCcchHHHHHHHhcccchH----HHHHHHHhhhccch--HHH
Confidence 77653 3333334444677654322 24566667788777653 344432 34566777776332 233
Q ss_pred HhhhcCChHHHHHhhccCC-hhHHHHHHHHHHHhccCCChhHHHhhhcccchHHHHHHhcCC-CCHHHHHHHHHHHhcCC
Q 001833 674 TLTQCSAIPVLVQLCEHDN-ENVRANAVKLFCCLVDDGDEAIIREHVGQKCLETLVTIIQSS-HNEEEIASAMGILSKLP 751 (1008)
Q Consensus 674 ~i~e~~~i~~Lv~ll~~~~-~~v~~~a~~~L~~Ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~-~~~~v~~~a~~~L~nL~ 751 (1008)
.+.. .+..|...+...+ +..-..+...|++|. ..+-+...-+.....+|-+-..|..+ ..++.+...+-.++..+
T Consensus 501 ~Fid--yvgdLa~i~~nd~~E~F~~EClGtlanL~-v~dldw~~ilq~~~LvPw~k~~L~pga~eddLvL~~vi~~GT~a 577 (791)
T KOG1222|consen 501 MFID--YVGDLAGIAKNDNSESFGLECLGTLANLK-VTDLDWAKILQSENLVPWMKTQLQPGADEDDLVLQIVIACGTMA 577 (791)
T ss_pred HHHH--HHHHHHHHhhcCchHHHHHHHHHHHhhcc-cCCCCHHHHHhhccccHHHHHhhcCCccchhhhhHHHHHhhhhh
Confidence 3433 4677778777764 455667888888887 44444555555668889988888776 34567777777888888
Q ss_pred CChhhHHHHHhcCCHHHHHHHhhCCCCCCCchhhHHHHHHHHHHHhcCCCCHHHHHHHHH-cCChHHHHHHhhcCChHHH
Q 001833 752 EVPQFTQWLLDAGALPIVLNFLKNGRQNDPNRFQVVENAVGALRRFTAPTNLEWQKRAAE-AGVIPKLVQLLEYGTTLTK 830 (1008)
Q Consensus 752 ~~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~v~~~a~~aL~~L~~~~~~~~~~~l~~-~g~l~~Lv~lL~~~~~~v~ 830 (1008)
.+......+..++.++.++++|+... .+.+.+-..+.++..+..+ +..++.+.+ ...-..+++++++.+.++|
T Consensus 578 ~d~~cA~Lla~a~~i~tlieLL~a~Q----eDDEfV~QiiyVF~Q~l~H--e~tr~~miket~~~AylIDLMHDkN~eiR 651 (791)
T KOG1222|consen 578 RDLDCARLLAPAKLIDTLIELLQACQ----EDDEFVVQIIYVFLQFLKH--ELTRRLMIKETALGAYLIDLMHDKNAEIR 651 (791)
T ss_pred hhhHHHHHhCccccHHHHHHHHHhhc----ccchHHHHHHHHHHHHHHH--HHHHHHHHhhccchHHHHHHHhcccHHHH
Confidence 88888888999999999999999854 5667888889999999884 666666554 4556679999999999999
Q ss_pred HHHHHHHhhhhhcCC
Q 001833 831 EHAATSLARFSKNSL 845 (1008)
Q Consensus 831 ~~Aa~aL~nLs~~~~ 845 (1008)
+-+-.+|--++.++.
T Consensus 652 kVCDn~LdIiae~d~ 666 (791)
T KOG1222|consen 652 KVCDNALDIIAEHDK 666 (791)
T ss_pred HHHHHHHHHHHHhhH
Confidence 988888887776554
No 22
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=99.56 E-value=1.5e-12 Score=145.59 Aligned_cols=485 Identities=15% Similarity=0.130 Sum_probs=315.6
Q ss_pred hcCCChHHHHHHHHHHHhhc-CCcccHHHHHhcCcHHHHHHHHh--cCCHHHHHHHHHHHHHHcCCh-hhHHHHhhcCcH
Q 001833 470 ASSDDNQASRDAQELLENLS-FSDDNVVQMAKANYFKHLLQRLS--AGPESVKMRMATTLAEMELTD-HHKASLLEGNVL 545 (1008)
Q Consensus 470 L~~~~~~~~~~a~~aL~~Ls-~~~~n~~~i~~~g~v~~Lv~~L~--~~~~~~~~~aa~~L~~Ls~~~-~~k~~i~~~g~i 545 (1008)
+...+|+....|..-..|++ .+++++..+.+.|+++.|+.++. +++++.+...+.++..+...+ .....+.+.+.+
T Consensus 18 L~~~dpe~lvrai~~~kN~vig~~~~K~~~ik~GAv~~Ll~L~s~e~~s~~~k~~~~~llns~f~~eqd~v~svL~~~~l 97 (678)
T KOG1293|consen 18 LLHLDPEQLVRAIYMSKNLVIGFTDNKETNIKLGAVELLLALLSLEDGSTELKNGFAVLLNSLFLGEQDKVDSVLRIIEL 97 (678)
T ss_pred hhcCCHHHHHHHHHHhcchhhcCCCccchhhhhcchHHHHhhccccCCchhhhhhHHHHHHhHHhhccchHHHHHHHhhH
Confidence 44567777777777788886 57788888999999999999865 456777878888888886544 566678899999
Q ss_pred HHHHHHhccCC-HHHHHHHHHHHHHhhCCCchh---HHHHhcCChHHHHHHhcccCCCCcchHHHHHHHHHHHhcccccc
Q 001833 546 GPLLHLVSRGD-IQMKKVAVKALRNLSSVPQNG---LQMIKEGAVGPLVDLLLHHSSSSSSLREETATAIMHLAVSTMYQ 621 (1008)
Q Consensus 546 ~~Lv~lL~~~~-~~~~~~A~~aL~~L~~~~~~~---~~i~~~G~v~~Ll~ll~~~~~~~~~~~~~a~~~L~nLa~~~~~~ 621 (1008)
+.|..+|.+.+ ..+++..++++.++-...... .......+++.+..++.... ......-+....++++... .
T Consensus 98 l~Ll~LLs~sD~~~~le~~l~~lR~Ifet~~~q~~~~s~~~~sIi~~~s~l~s~~l---k~~~~l~~~~~a~~s~~~~-h 173 (678)
T KOG1293|consen 98 LKLLQLLSESDSLNVLEKTLRCLRTIFETSKYQDKKMSLHLKSIIVKFSLLYSIEL---KYISRLDVSRAAHLSSTKD-H 173 (678)
T ss_pred HHHHHHhcCcchHhHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHHhhhh---hhhhhhhhhhhccccccch-h
Confidence 99999999888 789999999999998533222 22223345555555554122 2233333344444444332 2
Q ss_pred ccCCcccccccchhHHHHHHHhhccCChHHHHHHHHHHH---HhccCCC--hhhHHHHhhhcCChH--HHHHhhccCChh
Q 001833 622 ESSQTPVTLLESDKEIFMLFSLINLTGPNVQQRILQTFN---ALCRSPS--AGNIKTTLTQCSAIP--VLVQLCEHDNEN 694 (1008)
Q Consensus 622 ~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~aL~---~L~~~~~--~~~~~~~i~e~~~i~--~Lv~ll~~~~~~ 694 (1008)
+ .++...+....+..++...+...|..++..+. ++..+++ .-......+..|..+ .+.+++++++..
T Consensus 174 q------~Il~Na~i~ekI~~l~~~~s~~~RlaaL~~~sr~~~iL~Nn~~~sm~~l~~L~d~~v~~r~~v~rL~k~~~~s 247 (678)
T KOG1293|consen 174 Q------LILCNAGILEKINILLMYLSSKLRLAALLCLSRGDRILRNNPLGSMFLLGLLKDKGVNIRCVVTRLLKDPDFS 247 (678)
T ss_pred h------heeccccchhhHHHHHHhhhHHHHHHHHHHhhccceeeecCchhHHHHHHHHhccccchhhhhhhhhhCCCcc
Confidence 2 26667777777777777778889999999999 6665432 234556666667665 567788888888
Q ss_pred HHHHHHHHHHHhccCC-C--hhHHHhh-hccc----chHHHHHHhcCCCCHHHHHHHHHHHhcCCC-ChhhHHHHHhcCC
Q 001833 695 VRANAVKLFCCLVDDG-D--EAIIREH-VGQK----CLETLVTIIQSSHNEEEIASAMGILSKLPE-VPQFTQWLLDAGA 765 (1008)
Q Consensus 695 v~~~a~~~L~~Ls~~~-~--~~~~~~~-~~~~----~i~~Lv~lL~~~~~~~v~~~a~~~L~nL~~-~~~~~~~l~~~g~ 765 (1008)
.+..++.++.++.... + +.-.... .+.| ..-..+.+..++.- .....++...+.++. -......-++...
T Consensus 248 ~~l~sl~cl~~~~~~s~~~d~l~~~~~~~dmgd~~i~q~~~i~l~~~P~~-s~l~~~~~l~c~~a~~~sklq~~~~e~~~ 326 (678)
T KOG1293|consen 248 ERLRSLECLVPYLRKSFNYDPLPWWFIFFDMGDSLIVQYNCIVLMNDPGL-STLDHTNVLFCILARFASKLQLPQHEEAT 326 (678)
T ss_pred HHHHHHHHHHHHHhccccccccccceeeccCchHHHHHHhhheeecCCce-eehhhhhhhHHHHHHHHHhhhhHHhhhhh
Confidence 8888888877665211 1 1111111 1111 01111112222210 011122333333332 2223334456667
Q ss_pred HHHHHHHhhCCCCCCCchhhHH---HHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHHHhhcCChHHHHHHHHHHhhhhh
Q 001833 766 LPIVLNFLKNGRQNDPNRFQVV---ENAVGALRRFTAPTNLEWQKRAAEAGVIPKLVQLLEYGTTLTKEHAATSLARFSK 842 (1008)
Q Consensus 766 l~~Lv~lL~~~~~~~~~~~~v~---~~a~~aL~~L~~~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~v~~~Aa~aL~nLs~ 842 (1008)
.+.+.+++..+..-....+..+ -+-......++.+.....+..+.+.-....+..+....+.....+|+.++.++++
T Consensus 327 ~~~~~ellf~~~sl~a~~~~~~~i~l~e~~i~~~~~~~~~i~~~k~~l~~~t~~~l~~~~~~kd~~~~aaa~l~~~s~sr 406 (678)
T KOG1293|consen 327 LKTTTELLFICASLAASDEKYRLILLNETLILNHLEYGLEISLKKEILETTTESHLMCLPPIKDHDFVAAALLCLKSFSR 406 (678)
T ss_pred hhhHHHHHHHHHHHhhcchhhhHHHhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHH
Confidence 7777777765221111111111 1222233333443334445555555555555555667788999999999999998
Q ss_pred cCCCCCCCCCCCCcccccCCCCCCcccccCcccCcccchhHhhccchHHHHHhhcCCChhhhHHHHHHHHhhhcccccch
Q 001833 843 NSLGLSRPIPKRKGFWCFSPPPEIGCQVHGGLCGIESSFCLLEANAVRPLVRVLEDPDHGACEASLDALVTLIEGERLQN 922 (1008)
Q Consensus 843 ~~~~l~~~~~~~~g~~~~~~~~~~~c~vh~~~c~~~~~~~l~~~g~i~~Lv~lL~~~d~~v~~~al~aL~~L~~~~~~~~ 922 (1008)
+...++.. +-...++.||++++.+++..|...+++||+|++ -++..
T Consensus 407 sV~aL~tg--------------------------------~~~~dv~~plvqll~dp~~~i~~~~lgai~NlV--mefs~ 452 (678)
T KOG1293|consen 407 SVSALRTG--------------------------------LKRNDVAQPLVQLLMDPEIMIMGITLGAICNLV--MEFSN 452 (678)
T ss_pred HHHHHHcC--------------------------------CccchhHHHHHHHhhCcchhHHHHHHHHHHHHH--hhccc
Confidence 76655443 223457999999999999999999999999999 55668
Q ss_pred hhHHHHhcCchHHHHHHhcCCChHHHHHHHHHHHHH-hcChHHHH-H-hccccCchhhhhcccCCchhhHHHHHHHHHHh
Q 001833 923 GSKVLEDANAIDRMVRFLSSPSPKLQEKALDSVERI-FRLPEFKQ-K-YGKSAQMPLVDLTQRGNSSMKSLSARVLAHLN 999 (1008)
Q Consensus 923 ~~~~i~~~~~i~~l~~ll~~~~~~l~~~a~~~L~~l-~~~~~~~~-~-~~~~~~~~Lv~l~~~~~~~~~~~Aa~~L~~L~ 999 (1008)
.+..+.+.|||+.+...+.+.++.++..+.|+|.++ |...+..+ . +++-....|+++..+.++.+++-+=..|++|-
T Consensus 453 ~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~ 532 (678)
T KOG1293|consen 453 LKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLT 532 (678)
T ss_pred HHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999987 54444322 2 23223456888999999999988888888764
No 23
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=99.55 E-value=3e-13 Score=160.20 Aligned_cols=372 Identities=17% Similarity=0.199 Sum_probs=275.3
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHhhCCCchhHHHHhcCChHHHHHHhcccCCCCcchHHHHHHHHHHHhccccccccCCc
Q 001833 547 PLLHLVSRGDIQMKKVAVKALRNLSSVPQNGLQMIKEGAVGPLVDLLLHHSSSSSSLREETATAIMHLAVSTMYQESSQT 626 (1008)
Q Consensus 547 ~Lv~lL~~~~~~~~~~A~~aL~~L~~~~~~~~~i~~~G~v~~Ll~ll~~~~~~~~~~~~~a~~~L~nLa~~~~~~~~~~~ 626 (1008)
.|..++...+ ++.-...+..++..++.+..+...|.+|.|++++...+++..+.+..|-.+|.||..+.........
T Consensus 201 sllsml~t~D---~ee~ar~fLemSss~esCaamR~SgCLpLLvQilH~~d~~~kear~~A~aALHNIVhSqPD~kr~RR 277 (2195)
T KOG2122|consen 201 SLLSMLGTDD---EEEMARTFLEMSSSPESCAAMRRSGCLPLLVQILHGPDDEDKEARKRASAALHNIVHSQPDEKRGRR 277 (2195)
T ss_pred HHhhhcccCC---HHHHHHHHHHhccCchhhHHHHhccchHHHHHHhhCCchhhHHHHHHHHHHHHHHhhcCcchhhhHH
Confidence 4555555544 4555667888999999999999999999999999877765678899999999999986543322111
Q ss_pred ccccccchhHHHHH----HHhhccCCh-----HH---HHHHHHHHHHhccCCChhhHHHHhhhcCChHHHHHhhccC---
Q 001833 627 PVTLLESDKEIFML----FSLINLTGP-----NV---QQRILQTFNALCRSPSAGNIKTTLTQCSAIPVLVQLCEHD--- 691 (1008)
Q Consensus 627 ~~~~l~~~~~i~~L----~~ll~~~~~-----~v---~~~al~aL~~L~~~~~~~~~~~~i~e~~~i~~Lv~ll~~~--- 691 (1008)
-+.+|.--+-|... ...+....+ .+ .+.|+.+|..++. .++.|.+|.+.|++..+-+|++-+
T Consensus 278 E~kvL~lLeQIraYC~~~~~~lqar~~~~apa~~~H~lcaA~~~lMK~SF---DEEhR~aM~ELG~LqAIaeLl~vDh~m 354 (2195)
T KOG2122|consen 278 EKKVLHLLEQIRAYCETCWTWLQARGPAIAPASDEHQLCAALCTLMKLSF---DEEHRHAMNELGGLQAIAELLQVDHEM 354 (2195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccchhhHHHHHHHHHhhc---cHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 11122211111111 111221111 12 2356666666655 588999999999999999888532
Q ss_pred ---------ChhHHHHHHHHHHHhccCCChhHHHhh-hcccchHHHHHHhcCCCCHHHHHHHHHHHhcCCC--ChhhHHH
Q 001833 692 ---------NENVRANAVKLFCCLVDDGDEAIIREH-VGQKCLETLVTIIQSSHNEEEIASAMGILSKLPE--VPQFTQW 759 (1008)
Q Consensus 692 ---------~~~v~~~a~~~L~~Ls~~~~~~~~~~~-~~~~~i~~Lv~lL~~~~~~~v~~~a~~~L~nL~~--~~~~~~~ 759 (1008)
...+|.++..+|-||+ .++..+...+ -..|++..+|..|.+.+ +++..-.+++|.||+= +......
T Consensus 355 hgp~tnd~~~~aLRrYa~MALTNLT-FGDv~NKa~LCs~rgfMeavVAQL~s~p-eeL~QV~AsvLRNLSWRAD~nmKkv 432 (2195)
T KOG2122|consen 355 HGPETNDGECNALRRYAGMALTNLT-FGDVANKATLCSQRGFMEAVVAQLISAP-EELLQVYASVLRNLSWRADSNMKKV 432 (2195)
T ss_pred cCCCCCcHHHHHHHHHHHHHhhccc-cccccchhhhhhhhhHHHHHHHHHhcCh-HHHHHHHHHHHHhccccccccHHHH
Confidence 2467999999999999 6665555555 34589999999998854 4677778899999987 6667778
Q ss_pred HHhcCCHHHHHHHhhCCCCCCCchhhHHHHHHHHHHHhcCCCCHHHHHHHHH-cCChHHHHHHhhcC----ChHHHHHHH
Q 001833 760 LLDAGALPIVLNFLKNGRQNDPNRFQVVENAVGALRRFTAPTNLEWQKRAAE-AGVIPKLVQLLEYG----TTLTKEHAA 834 (1008)
Q Consensus 760 l~~~g~l~~Lv~lL~~~~~~~~~~~~v~~~a~~aL~~L~~~~~~~~~~~l~~-~g~l~~Lv~lL~~~----~~~v~~~Aa 834 (1008)
+-+.|-+..|...--.. .++...+..+.+|+||+.+ ..+....|.. .|++..|+.+|... ...+-+.|-
T Consensus 433 LrE~GsVtaLa~~al~~-----~kEsTLKavLSALWNLSAH-cteNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaG 506 (2195)
T KOG2122|consen 433 LRETGSVTALAACALRN-----KKESTLKAVLSALWNLSAH-CTENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAG 506 (2195)
T ss_pred HHhhhhHHHHHHHHHHh-----cccchHHHHHHHHhhhhhc-ccccchhhhcccchHHHHHhhccccCCcchhhhhhcCc
Confidence 88899998888776552 4556788999999999998 5555555554 58999999999743 336677788
Q ss_pred HHHhhhhhcCCCCCCCCCCCCcccccCCCCCCcccccCcccCcccchhHhhccchHHHHHhhcCCChhhhHHHHHHHHhh
Q 001833 835 TSLARFSKNSLGLSRPIPKRKGFWCFSPPPEIGCQVHGGLCGIESSFCLLEANAVRPLVRVLEDPDHGACEASLDALVTL 914 (1008)
Q Consensus 835 ~aL~nLs~~~~~l~~~~~~~~g~~~~~~~~~~~c~vh~~~c~~~~~~~l~~~g~i~~Lv~lL~~~d~~v~~~al~aL~~L 914 (1008)
..|.|.+.... . ...+..-|.+.+++..|++.|++..-.+.-+++++|+||
T Consensus 507 GILRNVSS~IA----------------------------t-~E~yRQILR~~NCLq~LLQ~LKS~SLTiVSNaCGTLWNL 557 (2195)
T KOG2122|consen 507 GILRNVSSLIA----------------------------T-CEDYRQILRRHNCLQTLLQHLKSHSLTIVSNACGTLWNL 557 (2195)
T ss_pred cHHHHHHhHhh----------------------------c-cchHHHHHHHhhHHHHHHHHhhhcceEEeecchhhhhhh
Confidence 88888873221 1 223456688899999999999999999999999999999
Q ss_pred hcccccchhhHHHHhcCchHHHHHHhcCCChHHHHHHHHHHHHHhcChH
Q 001833 915 IEGERLQNGSKVLEDANAIDRMVRFLSSPSPKLQEKALDSVERIFRLPE 963 (1008)
Q Consensus 915 ~~~~~~~~~~~~i~~~~~i~~l~~ll~~~~~~l~~~a~~~L~~l~~~~~ 963 (1008)
. ....+-..+|.+.|++..+.+++++++..+-+-+...|.|++...-
T Consensus 558 S--AR~p~DQq~LwD~gAv~mLrnLIhSKhkMIa~GSaaALrNLln~RP 604 (2195)
T KOG2122|consen 558 S--ARSPEDQQMLWDDGAVPMLRNLIHSKHKMIAMGSAAALRNLLNFRP 604 (2195)
T ss_pred h--cCCHHHHHHHHhcccHHHHHHHHhhhhhhhhhhHHHHHHHHhcCCc
Confidence 9 2223678889999999999999999999999999999999987763
No 24
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.54 E-value=1.5e-10 Score=135.92 Aligned_cols=399 Identities=17% Similarity=0.206 Sum_probs=289.1
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhccCChhhHHHhhccCCcHHHHHHHhccC-hhHHHHHHHHHHHhccCchhhHHhhc
Q 001833 380 PKLIYLLGSKNRDVRNRALIILHILVKDSNDTKERLANGDDAVESIVRSLGRR-IEERKLAVALLLELSTCNTLRDQIGD 458 (1008)
Q Consensus 380 ~~L~~lL~s~~~~~~~~Al~~L~~Ls~~~~~~k~~i~~~~g~i~~Lv~~L~~~-~~~~~~A~~~L~~Ls~~~~~~~~i~~ 458 (1008)
+.+...|.+.+.+.-..+..+|..+.... ..... . .+..+.+...|.++ ..++..++..|..+..+++....+..
T Consensus 41 ~~lf~~L~~~~~e~v~~~~~iL~~~l~~~-~~~~l--~-~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~ 116 (503)
T PF10508_consen 41 PVLFDCLNTSNREQVELICDILKRLLSAL-SPDSL--L-PQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLV 116 (503)
T ss_pred HHHHHHHhhcChHHHHHHHHHHHHHHhcc-CHHHH--H-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhc
Confidence 34777777776666666666776655433 11211 2 46777888888774 56788889999998887766555555
Q ss_pred ccchHHHHHHHhcCCChHHHHHHHHHHHhhcCCcccHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHHc-CChhhHH
Q 001833 459 VQGCILLLVTMASSDDNQASRDAQELLENLSFSDDNVVQMAKANYFKHLLQRLSAGPESVKMRMATTLAEME-LTDHHKA 537 (1008)
Q Consensus 459 ~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~~~n~~~i~~~g~v~~Lv~~L~~~~~~~~~~aa~~L~~Ls-~~~~~k~ 537 (1008)
..+.++.++..+.++|..+...|+.+|.+++.++.....+...+.+..|..++...++.+|..+..++.+++ .+++...
T Consensus 117 ~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~ 196 (503)
T PF10508_consen 117 DNELLPLIIQCLRDPDLSVAKAAIKALKKLASHPEGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAE 196 (503)
T ss_pred CccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHH
Confidence 589999999999999999999999999999999888888889999999999999888899999999999996 4567777
Q ss_pred HHhhcCcHHHHHHHhccCCHHHHHHHHHHHHHhhCCCchhHHHHhcCChHHHHHHhcccCCCC--cc-hHHHHHHHHHHH
Q 001833 538 SLLEGNVLGPLLHLVSRGDIQMKKVAVKALRNLSSVPQNGLQMIKEGAVGPLVDLLLHHSSSS--SS-LREETATAIMHL 614 (1008)
Q Consensus 538 ~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~~~~~~~i~~~G~v~~Ll~ll~~~~~~~--~~-~~~~a~~~L~nL 614 (1008)
.+.+.|+++.++..+.+.|.-++.+|+..|..|+..+.+...+.+.|+++.|..++.....++ .. ..-..+...+++
T Consensus 197 ~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~l 276 (503)
T PF10508_consen 197 AVVNSGLLDLLLKELDSDDILVQLNALELLSELAETPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNL 276 (503)
T ss_pred HHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHcChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHH
Confidence 888899999999999999999999999999999999999999999999999999998765442 11 223334666667
Q ss_pred hccccccccCCcccccc-cchhHHHHHHHhhccCChHHHHHHHHHHHHhccCCChhhHHHHh-hh-cC----ChHHHHHh
Q 001833 615 AVSTMYQESSQTPVTLL-ESDKEIFMLFSLINLTGPNVQQRILQTFNALCRSPSAGNIKTTL-TQ-CS----AIPVLVQL 687 (1008)
Q Consensus 615 a~~~~~~~~~~~~~~~l-~~~~~i~~L~~ll~~~~~~v~~~al~aL~~L~~~~~~~~~~~~i-~e-~~----~i~~Lv~l 687 (1008)
+..... .++ .....+..+..++.+.++..+..|+.++..+++..++ +..+ .. .+ .+..+...
T Consensus 277 a~~~~~--------~v~~~~p~~~~~l~~~~~s~d~~~~~~A~dtlg~igst~~G---~~~L~~~~~~~~~~~l~~~~~~ 345 (503)
T PF10508_consen 277 ARVSPQ--------EVLELYPAFLERLFSMLESQDPTIREVAFDTLGQIGSTVEG---KQLLLQKQGPAMKHVLKAIGDA 345 (503)
T ss_pred HhcChH--------HHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHhCCHHH---HHHHHhhcchHHHHHHHHHHHH
Confidence 653111 011 1244556677778899999999999999999986433 3333 22 22 24444556
Q ss_pred hccCChhHHHHHHHHHHHhccCCCh---hHHH-------hhhcccchH-HHHHHhcCCCCHHHHHHHHHHHhcCCCChhh
Q 001833 688 CEHDNENVRANAVKLFCCLVDDGDE---AIIR-------EHVGQKCLE-TLVTIIQSSHNEEEIASAMGILSKLPEVPQF 756 (1008)
Q Consensus 688 l~~~~~~v~~~a~~~L~~Ls~~~~~---~~~~-------~~~~~~~i~-~Lv~lL~~~~~~~v~~~a~~~L~nL~~~~~~ 756 (1008)
..++..+++..+..+|.++-..+.+ +.+. .....+... .+..+++. +-++++.++.+.|..|+..+-.
T Consensus 346 ~~~~~~~lk~r~l~al~~il~~~~~~~~~~i~~~~~~w~~~~~~~~~~~~l~~~~~q-PF~elr~a~~~~l~~l~~~~Wg 424 (503)
T PF10508_consen 346 IKSGSTELKLRALHALASILTSGTDRQDNDILSITESWYESLSGSPLSNLLMSLLKQ-PFPELRCAAYRLLQALAAQPWG 424 (503)
T ss_pred hcCCchHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhcCCchHHHHHHHhcC-CchHHHHHHHHHHHHHhcCHHH
Confidence 6677889999999999998422221 1111 112334444 67777766 4568999999999999998877
Q ss_pred HHHHHhcCCHHHHHHHhhCCCC-CCCchhhHHHHHHHHHHHh
Q 001833 757 TQWLLDAGALPIVLNFLKNGRQ-NDPNRFQVVENAVGALRRF 797 (1008)
Q Consensus 757 ~~~l~~~g~l~~Lv~lL~~~~~-~~~~~~~v~~~a~~aL~~L 797 (1008)
.+.+...++ +++++-++.. ....-.+.+...+.+|.+-
T Consensus 425 ~~~i~~~~g---fie~lldr~~E~~K~~ke~K~~ii~~l~~~ 463 (503)
T PF10508_consen 425 QREICSSPG---FIEYLLDRSTETTKEGKEAKYDIIKALAKS 463 (503)
T ss_pred HHHHHhCcc---HHhhhcCCCCCCCHHHHHHHHHHHHHHHhc
Confidence 777765443 3444444221 1112345666677666644
No 25
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.51 E-value=3.1e-11 Score=141.59 Aligned_cols=404 Identities=17% Similarity=0.197 Sum_probs=280.7
Q ss_pred HHHHhcCCChHHHHHHHHHHHhhcCCcccHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHHcCChhh-HHHHhhcCc
Q 001833 466 LVTMASSDDNQASRDAQELLENLSFSDDNVVQMAKANYFKHLLQRLSAGPESVKMRMATTLAEMELTDHH-KASLLEGNV 544 (1008)
Q Consensus 466 Lv~lL~~~~~~~~~~a~~aL~~Ls~~~~n~~~i~~~g~v~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~~~~-k~~i~~~g~ 544 (1008)
+...|++.+.+....++.+|..+-........ ..++.+.|...|.++++.+|..++..|.++..+.+. ...+.+.++
T Consensus 43 lf~~L~~~~~e~v~~~~~iL~~~l~~~~~~~l--~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l 120 (503)
T PF10508_consen 43 LFDCLNTSNREQVELICDILKRLLSALSPDSL--LPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNEL 120 (503)
T ss_pred HHHHHhhcChHHHHHHHHHHHHHHhccCHHHH--HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccH
Confidence 67777777777778888888877543322222 567778888999999999999999999999776655 445677899
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHhhCCCchhHHHHhcCChHHHHHHhcccCCCCcchHHHHHHHHHHHhccccccccC
Q 001833 545 LGPLLHLVSRGDIQMKKVAVKALRNLSSVPQNGLQMIKEGAVGPLVDLLLHHSSSSSSLREETATAIMHLAVSTMYQESS 624 (1008)
Q Consensus 545 i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~~~~~~~i~~~G~v~~Ll~ll~~~~~~~~~~~~~a~~~L~nLa~~~~~~~~~ 624 (1008)
++.++.++.+++..+.+.|..+|.+|+.++.....++..+.++.|..++...+ ..++-.+..++.+++.
T Consensus 121 ~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~~~l~~~~~~~~L~~l~~~~~---~~vR~Rv~el~v~i~~-------- 189 (503)
T PF10508_consen 121 LPLIIQCLRDPDLSVAKAAIKALKKLASHPEGLEQLFDSNLLSKLKSLMSQSS---DIVRCRVYELLVEIAS-------- 189 (503)
T ss_pred HHHHHHHHcCCcHHHHHHHHHHHHHHhCCchhHHHHhCcchHHHHHHHHhccC---HHHHHHHHHHHHHHHh--------
Confidence 99999999999999999999999999998888888888888888888887533 2455555555555543
Q ss_pred CcccccccchhHHHHHHHhhccCChHHHHHHHHHHHHhccCCChhhHHHHhhhcCChHHHHHhhccCChhHHHHHHHHHH
Q 001833 625 QTPVTLLESDKEIFMLFSLINLTGPNVQQRILQTFNALCRSPSAGNIKTTLTQCSAIPVLVQLCEHDNENVRANAVKLFC 704 (1008)
Q Consensus 625 ~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~aL~~L~~~~~~~~~~~~i~e~~~i~~Lv~ll~~~~~~v~~~a~~~L~ 704 (1008)
. +++....+.+.|.++.++..+.++|.-++.+++.+|.
T Consensus 190 ----------------------------------------~--S~~~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~ 227 (503)
T PF10508_consen 190 ----------------------------------------H--SPEAAEAVVNSGLLDLLLKELDSDDILVQLNALELLS 227 (503)
T ss_pred ----------------------------------------c--CHHHHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHH
Confidence 2 3455566777899999999999999999999999999
Q ss_pred HhccCCChhHHHhhhcccchHHHHHHhcCCCCHH-----HHHHHHHHHhcCCC-ChhhHHHHHhcCCHHHHHHHhhCCCC
Q 001833 705 CLVDDGDEAIIREHVGQKCLETLVTIIQSSHNEE-----EIASAMGILSKLPE-VPQFTQWLLDAGALPIVLNFLKNGRQ 778 (1008)
Q Consensus 705 ~Ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~-----v~~~a~~~L~nL~~-~~~~~~~l~~~g~l~~Lv~lL~~~~~ 778 (1008)
.|+. .++....+.+.|+++.|.+++.+...+. .....+...++++. ++......+ ..++..+...+.+
T Consensus 228 ~La~--~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~~~~~v~~~~-p~~~~~l~~~~~s--- 301 (503)
T PF10508_consen 228 ELAE--TPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARVSPQEVLELY-PAFLERLFSMLES--- 301 (503)
T ss_pred HHHc--ChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhcChHHHHHHH-HHHHHHHHHHhCC---
Confidence 9984 5667777888899999999998763322 22334466677766 333322111 2334445555555
Q ss_pred CCCchhhHHHHHHHHHHHhcCCCCHHHHHHH-HHc-CC----hHHHHHHhhcCChHHHHHHHHHHhhhhhcCCCCCCCCC
Q 001833 779 NDPNRFQVVENAVGALRRFTAPTNLEWQKRA-AEA-GV----IPKLVQLLEYGTTLTKEHAATSLARFSKNSLGLSRPIP 852 (1008)
Q Consensus 779 ~~~~~~~v~~~a~~aL~~L~~~~~~~~~~~l-~~~-g~----l~~Lv~lL~~~~~~v~~~Aa~aL~nLs~~~~~l~~~~~ 852 (1008)
.++..+..|..+++.++. +.+....+ ... +. +..+.....++..++|.++..++.++...... +
T Consensus 302 ---~d~~~~~~A~dtlg~igs--t~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~il~~~~~--~--- 371 (503)
T PF10508_consen 302 ---QDPTIREVAFDTLGQIGS--TVEGKQLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRALHALASILTSGTD--R--- 371 (503)
T ss_pred ---CChhHHHHHHHHHHHHhC--CHHHHHHHHhhcchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhcCCC--C---
Confidence 678899999999999997 67777777 333 23 34444445567779999999999999632211 0
Q ss_pred CCCcccccCCCCCCcccccCcccCcccchhHhhccchH-HHHHhhcCCChhhhHHHHHHHHhhh-cccccchhhHHHHhc
Q 001833 853 KRKGFWCFSPPPEIGCQVHGGLCGIESSFCLLEANAVR-PLVRVLEDPDHGACEASLDALVTLI-EGERLQNGSKVLEDA 930 (1008)
Q Consensus 853 ~~~g~~~~~~~~~~~c~vh~~~c~~~~~~~l~~~g~i~-~Lv~lL~~~d~~v~~~al~aL~~L~-~~~~~~~~~~~i~~~ 930 (1008)
... ... +-.+..|.....+... .++.+++.+=+++|.+++..|..++ .. -+...+...
T Consensus 372 -~~~---------~i~------~~~~~w~~~~~~~~~~~~l~~~~~qPF~elr~a~~~~l~~l~~~~----Wg~~~i~~~ 431 (503)
T PF10508_consen 372 -QDN---------DIL------SITESWYESLSGSPLSNLLMSLLKQPFPELRCAAYRLLQALAAQP----WGQREICSS 431 (503)
T ss_pred -chH---------HHH------HHHHHHHHHhcCCchHHHHHHHhcCCchHHHHHHHHHHHHHhcCH----HHHHHHHhC
Confidence 000 000 0011222233334444 6677887776899999999999999 33 344445544
Q ss_pred -CchHHHHHHhcCCChHHHHHHHHHHHHHhc
Q 001833 931 -NAIDRMVRFLSSPSPKLQEKALDSVERIFR 960 (1008)
Q Consensus 931 -~~i~~l~~ll~~~~~~l~~~a~~~L~~l~~ 960 (1008)
|.++.+.+=-...+.+.++.=..++..+..
T Consensus 432 ~gfie~lldr~~E~~K~~ke~K~~ii~~l~~ 462 (503)
T PF10508_consen 432 PGFIEYLLDRSTETTKEGKEAKYDIIKALAK 462 (503)
T ss_pred ccHHhhhcCCCCCCCHHHHHHHHHHHHHHHh
Confidence 444444443344555666655556655543
No 26
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=99.49 E-value=7.2e-11 Score=141.93 Aligned_cols=495 Identities=18% Similarity=0.246 Sum_probs=340.2
Q ss_pred chHHHHHHHHHHHHHHhhchhhhhhHhhcCchHHHHHHHcCCCHHHHHHHHHHHHHhccCChhhHHHhhccCCcHHHHHH
Q 001833 348 EVEEVLHCLEQLQDLCQQRDQHREWVILENYIPKLIYLLGSKNRDVRNRALIILHILVKDSNDTKERLANGDDAVESIVR 427 (1008)
Q Consensus 348 ~~~~~~~al~~L~~l~~~~~~~r~~i~~~g~i~~L~~lL~s~~~~~~~~Al~~L~~Ls~~~~~~k~~i~~~~g~i~~Lv~ 427 (1008)
+...+.+++..|..+...+.... -+.+.++.++.+.+...++-+--++..+...+++.-. =++..+.+
T Consensus 19 ~~~~~~~~l~kli~~~~~G~~~~------~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~~~~~------l~~n~l~k 86 (526)
T PF01602_consen 19 DISKKKEALKKLIYLMMLGYDIS------FLFMEVIKLISSKDLELKRLGYLYLSLYLHEDPELLI------LIINSLQK 86 (526)
T ss_dssp HHHHHHHHHHHHHHHHHTT---G------STHHHHHCTCSSSSHHHHHHHHHHHHHHTTTSHHHHH------HHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcCCCCc------hHHHHHHHHhCCCCHHHHHHHHHHHHHHhhcchhHHH------HHHHHHHH
Confidence 66777888888877766554322 3577888888999999999888888888877754221 13445666
Q ss_pred HhccC-hhHHHHHHHHHHHhccCchhhHHhhcccchHHHHHHHhcCCChHHHHHHHHHHHhhcCCcccHHHHHhcCcHHH
Q 001833 428 SLGRR-IEERKLAVALLLELSTCNTLRDQIGDVQGCILLLVTMASSDDNQASRDAQELLENLSFSDDNVVQMAKANYFKH 506 (1008)
Q Consensus 428 ~L~~~-~~~~~~A~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~~~n~~~i~~~g~v~~ 506 (1008)
-|.++ ...+..|+.+|.++. +++... -.++.+..++.++++.+++.|+.++.++....+. .+..+.++.
T Consensus 87 dl~~~n~~~~~lAL~~l~~i~-~~~~~~------~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~---~~~~~~~~~ 156 (526)
T PF01602_consen 87 DLNSPNPYIRGLALRTLSNIR-TPEMAE------PLIPDVIKLLSDPSPYVRKKAALALLKIYRKDPD---LVEDELIPK 156 (526)
T ss_dssp HHCSSSHHHHHHHHHHHHHH--SHHHHH------HHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHC---CHHGGHHHH
T ss_pred hhcCCCHHHHHHHHhhhhhhc-ccchhh------HHHHHHHHHhcCCchHHHHHHHHHHHHHhccCHH---HHHHHHHHH
Confidence 66654 456888888888887 333332 3467788889999999999999999999643322 112226888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHcCChhhHHHHhhcCcHHHHHHHhccCCHHHHHHHHHHHHHhhCCCchhHHHHhcCCh
Q 001833 507 LLQRLSAGPESVKMRMATTLAEMELTDHHKASLLEGNVLGPLLHLVSRGDIQMKKVAVKALRNLSSVPQNGLQMIKEGAV 586 (1008)
Q Consensus 507 Lv~~L~~~~~~~~~~aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~~~~~~~i~~~G~v 586 (1008)
+.++|.+.++.++..|+.++..+...++.-. -.-...+..|.+++...+|..+...+..|..++........- ...+
T Consensus 157 l~~lL~d~~~~V~~~a~~~l~~i~~~~~~~~-~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~~~--~~~i 233 (526)
T PF01602_consen 157 LKQLLSDKDPSVVSAALSLLSEIKCNDDSYK-SLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPEDADK--NRII 233 (526)
T ss_dssp HHHHTTHSSHHHHHHHHHHHHHHHCTHHHHT-THHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHHHH--HHHH
T ss_pred HhhhccCCcchhHHHHHHHHHHHccCcchhh-hhHHHHHHHhhhcccccchHHHHHHHHHHHhcccCChhhhhH--HHHH
Confidence 9999999999999999999999822222111 111334555566667889999999999999888643322210 4567
Q ss_pred HHHHHHhcccCCCCcchHHHHHHHHHHHhccccccccCCcccccccchhHHHHHHHhhccCChHHHHHHHHHHHHhccCC
Q 001833 587 GPLVDLLLHHSSSSSSLREETATAIMHLAVSTMYQESSQTPVTLLESDKEIFMLFSLINLTGPNVQQRILQTFNALCRSP 666 (1008)
Q Consensus 587 ~~Ll~ll~~~~~~~~~~~~~a~~~L~nLa~~~~~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~aL~~L~~~~ 666 (1008)
+.+..++.+.+ +.+.-.+..++..+..... .-..++..+..++.+.++.++..++.+|..++...
T Consensus 234 ~~l~~~l~s~~---~~V~~e~~~~i~~l~~~~~------------~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~ 298 (526)
T PF01602_consen 234 EPLLNLLQSSS---PSVVYEAIRLIIKLSPSPE------------LLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSN 298 (526)
T ss_dssp HHHHHHHHHHH---HHHHHHHHHHHHHHSSSHH------------HHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHC
T ss_pred HHHHHHhhccc---cHHHHHHHHHHHHhhcchH------------HHHhhHHHHHHHhhcccchhehhHHHHHHHhhccc
Confidence 88888888654 6788899999998865433 12468899999999999999999999999998752
Q ss_pred ChhhHHHHhhhcCChHHHHHhhc-cCChhHHHHHHHHHHHhccCCChhHHHhhhcccchHHHHHHhcCCCCHHHHHHHHH
Q 001833 667 SAGNIKTTLTQCSAIPVLVQLCE-HDNENVRANAVKLFCCLVDDGDEAIIREHVGQKCLETLVTIIQSSHNEEEIASAMG 745 (1008)
Q Consensus 667 ~~~~~~~~i~e~~~i~~Lv~ll~-~~~~~v~~~a~~~L~~Ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~v~~~a~~ 745 (1008)
...+. .....+..+. +++..++..++.+|..++ +..+... .++.|...+...++.+.+..++.
T Consensus 299 -----~~~v~---~~~~~~~~l~~~~d~~Ir~~~l~lL~~l~---~~~n~~~-----Il~eL~~~l~~~~d~~~~~~~i~ 362 (526)
T PF01602_consen 299 -----PPAVF---NQSLILFFLLYDDDPSIRKKALDLLYKLA---NESNVKE-----ILDELLKYLSELSDPDFRRELIK 362 (526)
T ss_dssp -----HHHHG---THHHHHHHHHCSSSHHHHHHHHHHHHHH-----HHHHHH-----HHHHHHHHHHHC--HHHHHHHHH
T ss_pred -----chhhh---hhhhhhheecCCCChhHHHHHHHHHhhcc---cccchhh-----HHHHHHHHHHhccchhhhhhHHH
Confidence 12222 2333344555 788999999999999998 2333333 57778888855456678999999
Q ss_pred HHhcCCC-ChhhHHHHHhcCCHHHHHHHhhCCCCCCCchhhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHHHhhc
Q 001833 746 ILSKLPE-VPQFTQWLLDAGALPIVLNFLKNGRQNDPNRFQVVENAVGALRRFTAPTNLEWQKRAAEAGVIPKLVQLLEY 824 (1008)
Q Consensus 746 ~L~nL~~-~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~v~~~a~~aL~~L~~~~~~~~~~~l~~~g~l~~Lv~lL~~ 824 (1008)
.++.++. .+....+ .+..+++++.. ....+...++..+.++... +++.+..+ +..|++.+.+
T Consensus 363 ~I~~la~~~~~~~~~-----~v~~l~~ll~~------~~~~~~~~~~~~i~~ll~~-~~~~~~~~-----l~~L~~~l~~ 425 (526)
T PF01602_consen 363 AIGDLAEKFPPDAEW-----YVDTLLKLLEI------SGDYVSNEIINVIRDLLSN-NPELREKI-----LKKLIELLED 425 (526)
T ss_dssp HHHHHHHHHGSSHHH-----HHHHHHHHHHC------TGGGCHCHHHHHHHHHHHH-STTTHHHH-----HHHHHHHHTS
T ss_pred HHHHHHhccCchHHH-----HHHHHHHhhhh------ccccccchHHHHHHHHhhc-ChhhhHHH-----HHHHHHHHHH
Confidence 9998876 3322222 36888999987 4556677888888888765 45544333 6778888876
Q ss_pred -CChHHHHHHHHHHhhhhhcCCCCCCCCCCCCcccccCCCCCCcccccCcccCcccchhHhhccchHHHHHhhcCCChhh
Q 001833 825 -GTTLTKEHAATSLARFSKNSLGLSRPIPKRKGFWCFSPPPEIGCQVHGGLCGIESSFCLLEANAVRPLVRVLEDPDHGA 903 (1008)
Q Consensus 825 -~~~~v~~~Aa~aL~nLs~~~~~l~~~~~~~~g~~~~~~~~~~~c~vh~~~c~~~~~~~l~~~g~i~~Lv~lL~~~d~~v 903 (1008)
.++.++..++|.++..+...+. .. .....+..++......++.+
T Consensus 426 ~~~~~~~~~~~wilGEy~~~~~~---------------------------------~~--~~~~~~~~l~~~~~~~~~~v 470 (526)
T PF01602_consen 426 ISSPEALAAAIWILGEYGELIEN---------------------------------TE--SAPDILRSLIENFIEESPEV 470 (526)
T ss_dssp SSSHHHHHHHHHHHHHHCHHHTT---------------------------------TT--HHHHHHHHHHHHHTTSHHHH
T ss_pred hhHHHHHHHHHhhhcccCCcccc---------------------------------cc--cHHHHHHHHHHhhccccHHH
Confidence 6779999999999999843321 00 01124555566666677889
Q ss_pred hHHHHHHHHhhh-cccccchhhHHHHhcCchHHHHHHhc--CCChHHHHHHHHHHH
Q 001833 904 CEASLDALVTLI-EGERLQNGSKVLEDANAIDRMVRFLS--SPSPKLQEKALDSVE 956 (1008)
Q Consensus 904 ~~~al~aL~~L~-~~~~~~~~~~~i~~~~~i~~l~~ll~--~~~~~l~~~a~~~L~ 956 (1008)
+..++.++..+. .... ++... ..++.+.++.. +.++++|.+|...+.
T Consensus 471 k~~ilt~~~Kl~~~~~~-~~~~~-----~i~~~~~~~~~~~s~~~evr~Ra~~y~~ 520 (526)
T PF01602_consen 471 KLQILTALAKLFKRNPE-NEVQN-----EILQFLLSLATEDSSDPEVRDRAREYLR 520 (526)
T ss_dssp HHHHHHHHHHHHHHSCS-TTHHH-----HHHHHHHCHHHHS-SSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCCc-hhhHH-----HHHHHHHHHhccCCCCHHHHHHHHHHHH
Confidence 999999999998 2211 01111 23455666666 789999999998774
No 27
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.48 E-value=2.9e-10 Score=135.42 Aligned_cols=545 Identities=19% Similarity=0.183 Sum_probs=331.2
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhccCChhhHHHhhccCCcHHHHHHHhcc--ChhHHHHHHHHHHHhcc------Cch
Q 001833 380 PKLIYLLGSKNRDVRNRALIILHILVKDSNDTKERLANGDDAVESIVRSLGR--RIEERKLAVALLLELST------CNT 451 (1008)
Q Consensus 380 ~~L~~lL~s~~~~~~~~Al~~L~~Ls~~~~~~k~~i~~~~g~i~~Lv~~L~~--~~~~~~~A~~~L~~Ls~------~~~ 451 (1008)
.-|+.-|.+.|.++|.+|-+.+.++.... ..++.|..++.. +++.|..|+..++.+.. +.+
T Consensus 7 ~qLl~~l~spDn~vr~~Ae~~l~~~~~~~-----------~~l~~L~~i~~~~~~p~~Rq~aaVl~Rkl~~~~w~~l~~e 75 (1075)
T KOG2171|consen 7 EQLLQQLLSPDNEVRRQAEEALETLAKTE-----------PLLPALAHILATSADPQVRQLAAVLLRKLLTKHWSRLSAE 75 (1075)
T ss_pred HHHHHHhcCCCchHHHHHHHHHHHhhccc-----------chHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhhcCCHH
Confidence 44555566788888999999998777655 367778888855 56778888888988843 455
Q ss_pred hhHHhhcccchHHHHHHHhcCCChHHHHHHHHHHHhhcCCcccHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHHcC
Q 001833 452 LRDQIGDVQGCILLLVTMASSDDNQASRDAQELLENLSFSDDNVVQMAKANYFKHLLQRLSAGPESVKMRMATTLAEMEL 531 (1008)
Q Consensus 452 ~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~~~n~~~i~~~g~v~~Lv~~L~~~~~~~~~~aa~~L~~Ls~ 531 (1008)
.+..|-. ..|-.+.+...+.++..-+.++..++.+.-.- --.+.++.|.+-.+++++..|+.+..+|..+..
T Consensus 76 ~~~siks-----~lL~~~~~E~~~~vr~k~~dviAeia~~~l~e---~WPell~~L~q~~~S~~~~~rE~al~il~s~~~ 147 (1075)
T KOG2171|consen 76 VQQSIKS-----SLLEIIQSETEPSVRHKLADVIAEIARNDLPE---KWPELLQFLFQSTKSPNPSLRESALLILSSLPE 147 (1075)
T ss_pred HHHHHHH-----HHHHHHHhccchHHHHHHHHHHHHHHHhcccc---chHHHHHHHHHHhcCCCcchhHHHHHHHHhhhh
Confidence 6666643 12333334567788888888888886543221 335677888888899999999999999999854
Q ss_pred ChhhHHHHhhcCcHHHHHHHhccCCHHHHHHHHHHHHHhhCCC-chhHHHHhc-CChHHHHHHhcccCC-CCcchHHHHH
Q 001833 532 TDHHKASLLEGNVLGPLLHLVSRGDIQMKKVAVKALRNLSSVP-QNGLQMIKE-GAVGPLVDLLLHHSS-SSSSLREETA 608 (1008)
Q Consensus 532 ~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~~-~~~~~i~~~-G~v~~Ll~ll~~~~~-~~~~~~~~a~ 608 (1008)
.-.+...-.-..+.+.+.+.+.+++..+|-.|+.++...+... .++...-.. ..+|.++..+..... +.......+.
T Consensus 148 ~~~~~~~~~~~~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l 227 (1075)
T KOG2171|consen 148 TFGNTLQPHLDDLLRLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQDGDDDAAKSAL 227 (1075)
T ss_pred hhccccchhHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhhhccchHHHHHHH
Confidence 3222210000123445556666776669999999999998533 344333222 357777777764221 1133456777
Q ss_pred HHHHHHhccccccccCCcccccccchhHHHHHHHhhcc--CChHHHHHHHHHHHHhccCCChhhHHHHh-hhcCChHHHH
Q 001833 609 TAIMHLAVSTMYQESSQTPVTLLESDKEIFMLFSLINL--TGPNVQQRILQTFNALCRSPSAGNIKTTL-TQCSAIPVLV 685 (1008)
Q Consensus 609 ~~L~nLa~~~~~~~~~~~~~~~l~~~~~i~~L~~ll~~--~~~~v~~~al~aL~~L~~~~~~~~~~~~i-~e~~~i~~Lv 685 (1008)
.+|..++.....--. ..+ ...+...+....+ -++.+|..|+..+..++.. .+..+|..- .....++.++
T Consensus 228 ~~l~El~e~~pk~l~-----~~l--~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~-Ap~~~k~~~~~~~~lv~~~l 299 (1075)
T KOG2171|consen 228 EALIELLESEPKLLR-----PHL--SQIIQFSLEIAKNKELENSIRHLALEFLVSLSEY-APAMCKKLALLGHTLVPVLL 299 (1075)
T ss_pred HHHHHHHhhchHHHH-----HHH--HHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHh-hHHHhhhchhhhccHHHHHH
Confidence 777777764321110 011 1233334444443 3678999999999999886 122222111 1122355566
Q ss_pred HhhccCC----------------hhHHHHHHHHHHHhccCCChhHHHhhhcccchHHHHHHhcCCCCHHHHHHHHHHHhc
Q 001833 686 QLCEHDN----------------ENVRANAVKLFCCLVDDGDEAIIREHVGQKCLETLVTIIQSSHNEEEIASAMGILSK 749 (1008)
Q Consensus 686 ~ll~~~~----------------~~v~~~a~~~L~~Ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~v~~~a~~~L~n 749 (1008)
.++.... ......|..+|-.++..-++..+. .-.++.+-.+|.+ .+...+.+++.+|+.
T Consensus 300 ~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~~v~----p~~~~~l~~~l~S-~~w~~R~AaL~Als~ 374 (1075)
T KOG2171|consen 300 AMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLGGKQVL----PPLFEALEAMLQS-TEWKERHAALLALSV 374 (1075)
T ss_pred HhcCCcccchhhccccccccccccCcHHHHHHHHHHHHhcCChhheh----HHHHHHHHHHhcC-CCHHHHHHHHHHHHH
Confidence 5554321 113445666666665222221111 1234555556666 567889999999999
Q ss_pred CCC-ChhhHHHHHhcCCHHHHHHHhhCCCCCCCchhhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHHHhhc-CCh
Q 001833 750 LPE-VPQFTQWLLDAGALPIVLNFLKNGRQNDPNRFQVVENAVGALRRFTAPTNLEWQKRAAEAGVIPKLVQLLEY-GTT 827 (1008)
Q Consensus 750 L~~-~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~v~~~a~~aL~~L~~~~~~~~~~~l~~~g~l~~Lv~lL~~-~~~ 827 (1008)
++. ..+..... =..+++.+++.|++ +++.||.+|+.+++.++.+-.|+.++.. ..-+.|.|+..+.+ .++
T Consensus 375 i~EGc~~~m~~~-l~~Il~~Vl~~l~D------phprVr~AA~naigQ~stdl~p~iqk~~-~e~l~~aL~~~ld~~~~~ 446 (1075)
T KOG2171|consen 375 IAEGCSDVMIGN-LPKILPIVLNGLND------PHPRVRYAALNAIGQMSTDLQPEIQKKH-HERLPPALIALLDSTQNV 446 (1075)
T ss_pred HHcccHHHHHHH-HHHHHHHHHhhcCC------CCHHHHHHHHHHHHhhhhhhcHHHHHHH-HHhccHHHHHHhcccCch
Confidence 988 33333222 24578888999998 7899999999999999987556665443 34567788888876 477
Q ss_pred HHHHHHHHHHhhhhhcCCCCCCCCCCCCcccccCCCCCCcccccCcccCcccchhHhhccchHHHHH-hhcCCChhhhHH
Q 001833 828 LTKEHAATSLARFSKNSLGLSRPIPKRKGFWCFSPPPEIGCQVHGGLCGIESSFCLLEANAVRPLVR-VLEDPDHGACEA 906 (1008)
Q Consensus 828 ~v~~~Aa~aL~nLs~~~~~l~~~~~~~~g~~~~~~~~~~~c~vh~~~c~~~~~~~l~~~g~i~~Lv~-lL~~~d~~v~~~ 906 (1008)
.++.+|+.++-|++...++ ....=.--+.+.+++. ++.++.+.+++.
T Consensus 447 rV~ahAa~al~nf~E~~~~--------------------------------~~l~pYLd~lm~~~l~~L~~~~~~~v~e~ 494 (1075)
T KOG2171|consen 447 RVQAHAAAALVNFSEECDK--------------------------------SILEPYLDGLMEKKLLLLLQSSKPYVQEQ 494 (1075)
T ss_pred HHHHHHHHHHHHHHHhCcH--------------------------------HHHHHHHHHHHHHHHHHHhcCCchhHHHH
Confidence 9999999999999954321 0111011234553444 445677889999
Q ss_pred HHHHHHhhh--cccccchhhHHHHhcCchHHHHHHhcCCC-hHHHHHHHHHHHHHhcC--hHHHHHhccccCc---hhhh
Q 001833 907 SLDALVTLI--EGERLQNGSKVLEDANAIDRMVRFLSSPS-PKLQEKALDSVERIFRL--PEFKQKYGKSAQM---PLVD 978 (1008)
Q Consensus 907 al~aL~~L~--~~~~~~~~~~~i~~~~~i~~l~~ll~~~~-~~l~~~a~~~L~~l~~~--~~~~~~~~~~~~~---~Lv~ 978 (1008)
+..||...+ ..+.+.++...+ ++.|.+++...+ .+.+......++.+-.- .-.+++|...+.. .+..
T Consensus 495 vvtaIasvA~AA~~~F~pY~d~~-----Mp~L~~~L~n~~~~d~r~LrgktmEcisli~~AVGke~F~~~a~eliqll~~ 569 (1075)
T KOG2171|consen 495 AVTAIASVADAAQEKFIPYFDRL-----MPLLKNFLQNADDKDLRELRGKTMECLSLIARAVGKEKFLPLAEELIQLLLE 569 (1075)
T ss_pred HHHHHHHHHHHHhhhhHhHHHHH-----HHHHHHHHhCCCchhhHHHHhhHHHHHHHHHHHhhhhhhhHhHHHHHHHHHh
Confidence 999999999 334444444443 666777775544 55555555555444211 1123334433321 2333
Q ss_pred h---cccCCchhhHHHHHHHHHHhcc
Q 001833 979 L---TQRGNSSMKSLSARVLAHLNVL 1001 (1008)
Q Consensus 979 l---~~~~~~~~~~~Aa~~L~~L~~~ 1001 (1008)
+ ....+...+..-...-+.|++.
T Consensus 570 ~~~~~~~~dd~~~sy~~~~warmc~i 595 (1075)
T KOG2171|consen 570 LQGSDQDDDDPLRSYMIAFWARMCRI 595 (1075)
T ss_pred hcccchhhccccHHHHHHHHHHHHHH
Confidence 3 2233455566655555555544
No 28
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.47 E-value=8.3e-10 Score=131.66 Aligned_cols=465 Identities=15% Similarity=0.197 Sum_probs=302.1
Q ss_pred hhhhhhccCcchHHHHHHHHHHHHHHhhchhhhhhHhhcCchHHHHHHHcC-CCHHHHHHHHHHHHHhccC-----Chhh
Q 001833 338 ASMKPKLVSTEVEEVLHCLEQLQDLCQQRDQHREWVILENYIPKLIYLLGS-KNRDVRNRALIILHILVKD-----SNDT 411 (1008)
Q Consensus 338 ~~~~~~l~~~~~~~~~~al~~L~~l~~~~~~~r~~i~~~g~i~~L~~lL~s-~~~~~~~~Al~~L~~Ls~~-----~~~~ 411 (1008)
..+...+.+.|.+.+.+|=+.+..+....+ ..+.|.+++.. .++++|.-|+..++.+... +.+.
T Consensus 7 ~qLl~~l~spDn~vr~~Ae~~l~~~~~~~~----------~l~~L~~i~~~~~~p~~Rq~aaVl~Rkl~~~~w~~l~~e~ 76 (1075)
T KOG2171|consen 7 EQLLQQLLSPDNEVRRQAEEALETLAKTEP----------LLPALAHILATSADPQVRQLAAVLLRKLLTKHWSRLSAEV 76 (1075)
T ss_pred HHHHHHhcCCCchHHHHHHHHHHHhhcccc----------hHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhhcCCHHH
Confidence 445566677777777777777766665433 68889988875 6788999888888877532 2345
Q ss_pred HHHhhccCCcHHHHHHHhccC--hhHHHHHHHHHHHhccCchhhHHhhcccchHHHHHHHhcCCChHHHHHHHHHHHhhc
Q 001833 412 KERLANGDDAVESIVRSLGRR--IEERKLAVALLLELSTCNTLRDQIGDVQGCILLLVTMASSDDNQASRDAQELLENLS 489 (1008)
Q Consensus 412 k~~i~~~~g~i~~Lv~~L~~~--~~~~~~A~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls 489 (1008)
|..|-+ .|+..+.+. ...|..-+.++.+++++.--. +.++.++.|++-.+++++..++.|+.+|..+.
T Consensus 77 ~~siks------~lL~~~~~E~~~~vr~k~~dviAeia~~~l~e----~WPell~~L~q~~~S~~~~~rE~al~il~s~~ 146 (1075)
T KOG2171|consen 77 QQSIKS------SLLEIIQSETEPSVRHKLADVIAEIARNDLPE----KWPELLQFLFQSTKSPNPSLRESALLILSSLP 146 (1075)
T ss_pred HHHHHH------HHHHHHHhccchHHHHHHHHHHHHHHHhcccc----chHHHHHHHHHHhcCCCcchhHHHHHHHHhhh
Confidence 544443 444554442 345666666777777643211 34788999999999999999999999999997
Q ss_pred CCcccHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHHcCChh-hHHHHhh-cCcHHHHHH----HhccCCHHHHHHH
Q 001833 490 FSDDNVVQMAKANYFKHLLQRLSAGPESVKMRMATTLAEMELTDH-HKASLLE-GNVLGPLLH----LVSRGDIQMKKVA 563 (1008)
Q Consensus 490 ~~~~n~~~i~~~g~v~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~~~-~k~~i~~-~g~i~~Lv~----lL~~~~~~~~~~A 563 (1008)
..-.|...-.=....+.+.+-+.+++..+|..++.+++.++..-+ ++...-. ...+|.++. .+..++...-..+
T Consensus 147 ~~~~~~~~~~~~~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~ 226 (1075)
T KOG2171|consen 147 ETFGNTLQPHLDDLLRLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQDGDDDAAKSA 226 (1075)
T ss_pred hhhccccchhHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhhhccchHHHHHH
Confidence 544443221111223334444556666699999999998854332 2222211 234555554 4556677777888
Q ss_pred HHHHHHhhC-CCchhHHHHhcCChHHHHHHhcccCCCCcchHHHHHHHHHHHhccccccccCCcccccccchhHHHHHHH
Q 001833 564 VKALRNLSS-VPQNGLQMIKEGAVGPLVDLLLHHSSSSSSLREETATAIMHLAVSTMYQESSQTPVTLLESDKEIFMLFS 642 (1008)
Q Consensus 564 ~~aL~~L~~-~~~~~~~i~~~G~v~~Ll~ll~~~~~~~~~~~~~a~~~L~nLa~~~~~~~~~~~~~~~l~~~~~i~~L~~ 642 (1008)
+.+|..+.. .+..-...+. .++..-+.+..+..-+ ..++..|+..|..+++....... .. ..--...+..++.
T Consensus 227 l~~l~El~e~~pk~l~~~l~-~ii~~~l~Ia~n~~l~-~~~R~~ALe~ivs~~e~Ap~~~k--~~--~~~~~~lv~~~l~ 300 (1075)
T KOG2171|consen 227 LEALIELLESEPKLLRPHLS-QIIQFSLEIAKNKELE-NSIRHLALEFLVSLSEYAPAMCK--KL--ALLGHTLVPVLLA 300 (1075)
T ss_pred HHHHHHHHhhchHHHHHHHH-HHHHHHHHHhhccccc-HHHHHHHHHHHHHHHHhhHHHhh--hc--hhhhccHHHHHHH
Confidence 888888874 3333222222 2566666666655544 67899999999999886321110 00 0011234455555
Q ss_pred hhccC--C--------------hHHHHHHHHHHHHhccCCChhhHHHHhhhcCChHHHHHhhccCChhHHHHHHHHHHHh
Q 001833 643 LINLT--G--------------PNVQQRILQTFNALCRSPSAGNIKTTLTQCSAIPVLVQLCEHDNENVRANAVKLFCCL 706 (1008)
Q Consensus 643 ll~~~--~--------------~~v~~~al~aL~~L~~~~~~~~~~~~i~e~~~i~~Lv~ll~~~~~~v~~~a~~~L~~L 706 (1008)
++... + ......+.++|-.++.+-.++.+... ..+.+-.++++.+..-|.+++.+|+.+
T Consensus 301 ~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~~v~p~-----~~~~l~~~l~S~~w~~R~AaL~Als~i 375 (1075)
T KOG2171|consen 301 MMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLGGKQVLPP-----LFEALEAMLQSTEWKERHAALLALSVI 375 (1075)
T ss_pred hcCCcccchhhccccccccccccCcHHHHHHHHHHHHhcCChhhehHH-----HHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 54411 1 11334677888888776444432222 245566788899999999999999999
Q ss_pred ccCCChhHHHhhhcccchHHHHHHhcCCCCHHHHHHHHHHHhcCCC-ChhhHHHHHhcCCHHHHHHHhhCCCCCCCchhh
Q 001833 707 VDDGDEAIIREHVGQKCLETLVTIIQSSHNEEEIASAMGILSKLPE-VPQFTQWLLDAGALPIVLNFLKNGRQNDPNRFQ 785 (1008)
Q Consensus 707 s~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~v~~~a~~~L~nL~~-~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~ 785 (1008)
+ .|+.+.....+. .+++..+..|.+ +++.|+.+|+.+++.++. -....+.-......+.|+..+.+. .++.
T Consensus 376 ~-EGc~~~m~~~l~-~Il~~Vl~~l~D-phprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~-----~~~r 447 (1075)
T KOG2171|consen 376 A-EGCSDVMIGNLP-KILPIVLNGLND-PHPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDST-----QNVR 447 (1075)
T ss_pred H-cccHHHHHHHHH-HHHHHHHhhcCC-CCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhccc-----CchH
Confidence 9 777666555432 577777788888 567899999999999998 333344445666788899998884 5678
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHcCChH-HHHHHhhcCChHHHHHHHHHHhhhhh
Q 001833 786 VVENAVGALRRFTAPTNLEWQKRAAEAGVIP-KLVQLLEYGTTLTKEHAATSLARFSK 842 (1008)
Q Consensus 786 v~~~a~~aL~~L~~~~~~~~~~~l~~~g~l~-~Lv~lL~~~~~~v~~~Aa~aL~nLs~ 842 (1008)
++..|+.++.|++.....+...-.. .+++. .|..++.++.+.++..++.+|+..+.
T Consensus 448 V~ahAa~al~nf~E~~~~~~l~pYL-d~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~ 504 (1075)
T KOG2171|consen 448 VQAHAAAALVNFSEECDKSILEPYL-DGLMEKKLLLLLQSSKPYVQEQAVTAIASVAD 504 (1075)
T ss_pred HHHHHHHHHHHHHHhCcHHHHHHHH-HHHHHHHHHHHhcCCchhHHHHHHHHHHHHHH
Confidence 9999999999998753333222211 23344 45556667889999999999999984
No 29
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=99.44 E-value=6.9e-11 Score=132.48 Aligned_cols=486 Identities=15% Similarity=0.137 Sum_probs=289.8
Q ss_pred hhccCcchHHHHHHHHHHHHHHhhchhhhhhHhhcCchHHHHHHHcCCCH--HHHHHHHHHHHHhccCChhhHHHhhccC
Q 001833 342 PKLVSTEVEEVLHCLEQLQDLCQQRDQHREWVILENYIPKLIYLLGSKNR--DVRNRALIILHILVKDSNDTKERLANGD 419 (1008)
Q Consensus 342 ~~l~~~~~~~~~~al~~L~~l~~~~~~~r~~i~~~g~i~~L~~lL~s~~~--~~~~~Al~~L~~Ls~~~~~~k~~i~~~~ 419 (1008)
..+...+++...+|.....++....+.++..+.+.|++|.|..++...+. +.+......+..+..++..+...+.+ .
T Consensus 16 ~~L~~~dpe~lvrai~~~kN~vig~~~~K~~~ik~GAv~~Ll~L~s~e~~s~~~k~~~~~llns~f~~eqd~v~svL~-~ 94 (678)
T KOG1293|consen 16 YRLLHLDPEQLVRAIYMSKNLVIGFTDNKETNIKLGAVELLLALLSLEDGSTELKNGFAVLLNSLFLGEQDKVDSVLR-I 94 (678)
T ss_pred HhhhcCCHHHHHHHHHHhcchhhcCCCccchhhhhcchHHHHhhccccCCchhhhhhHHHHHHhHHhhccchHHHHHH-H
Confidence 34455678888999999999999999988889999999999999987654 44555556666666666455555555 3
Q ss_pred CcHHHHHHHhccChhHHHHHHHHHHHhccCchhhHHhhcccchHHHHHHHhcCCC-hHHHHHHHHHHHhhcCCc---ccH
Q 001833 420 DAVESIVRSLGRRIEERKLAVALLLELSTCNTLRDQIGDVQGCILLLVTMASSDD-NQASRDAQELLENLSFSD---DNV 495 (1008)
Q Consensus 420 g~i~~Lv~~L~~~~~~~~~A~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~-~~~~~~a~~aL~~Ls~~~---~n~ 495 (1008)
+. ++.|..++.+.| ..++...+..+.++-... +-.
T Consensus 95 ~~-----------------------------------------ll~Ll~LLs~sD~~~~le~~l~~lR~Ifet~~~q~~~ 133 (678)
T KOG1293|consen 95 IE-----------------------------------------LLKLLQLLSESDSLNVLEKTLRCLRTIFETSKYQDKK 133 (678)
T ss_pred hh-----------------------------------------HHHHHHHhcCcchHhHHHHHHHHHHHHHhcccccccc
Confidence 44 444444454444 344444455555553221 222
Q ss_pred HHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHHcCChhhHHHHhhcCcHHHHHHHhccCCHHHHHHHHHHHH---HhhC
Q 001833 496 VQMAKANYFKHLLQRLSAGPESVKMRMATTLAEMELTDHHKASLLEGNVLGPLLHLVSRGDIQMKKVAVKALR---NLSS 572 (1008)
Q Consensus 496 ~~i~~~g~v~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~---~L~~ 572 (1008)
........++.+..++..........-+....+++...+++..+.++|+.+.+.-++..-+...+..|+.++. ++..
T Consensus 134 ~s~~~~sIi~~~s~l~s~~lk~~~~l~~~~~a~~s~~~~hq~Il~Na~i~ekI~~l~~~~s~~~RlaaL~~~sr~~~iL~ 213 (678)
T KOG1293|consen 134 MSLHLKSIIVKFSLLYSIELKYISRLDVSRAAHLSSTKDHQLILCNAGILEKINILLMYLSSKLRLAALLCLSRGDRILR 213 (678)
T ss_pred hhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhccccccchhhheeccccchhhHHHHHHhhhHHHHHHHHHHhhccceeee
Confidence 2233333444444333323333333444555566777778877888888888887777778889999999998 5554
Q ss_pred -CCchh----HHHHhcCChH--HHHHHhcccCCCCcchHHHHHHHHHHHhccccccccCCcccccccchh-----HHHHH
Q 001833 573 -VPQNG----LQMIKEGAVG--PLVDLLLHHSSSSSSLREETATAIMHLAVSTMYQESSQTPVTLLESDK-----EIFML 640 (1008)
Q Consensus 573 -~~~~~----~~i~~~G~v~--~Ll~ll~~~~~~~~~~~~~a~~~L~nLa~~~~~~~~~~~~~~~l~~~~-----~i~~L 640 (1008)
++... ....+.|+.+ .+.++++++. ...+..++..+.++...+..... ........+. .....
T Consensus 214 Nn~~~sm~~l~~L~d~~v~~r~~v~rL~k~~~---~s~~l~sl~cl~~~~~~s~~~d~--l~~~~~~~dmgd~~i~q~~~ 288 (678)
T KOG1293|consen 214 NNPLGSMFLLGLLKDKGVNIRCVVTRLLKDPD---FSERLRSLECLVPYLRKSFNYDP--LPWWFIFFDMGDSLIVQYNC 288 (678)
T ss_pred cCchhHHHHHHHHhccccchhhhhhhhhhCCC---ccHHHHHHHHHHHHHhccccccc--cccceeeccCchHHHHHHhh
Confidence 44433 2334556666 4556666554 34567777777777654422111 1111111111 11112
Q ss_pred HHhhccCChHHHHHHHHHHHHhccCCChhhHHHHhhhcCChHHHHHhhcc------CChhHHHHHHHHH---HHhccCCC
Q 001833 641 FSLINLTGPNVQQRILQTFNALCRSPSAGNIKTTLTQCSAIPVLVQLCEH------DNENVRANAVKLF---CCLVDDGD 711 (1008)
Q Consensus 641 ~~ll~~~~~~v~~~al~aL~~L~~~~~~~~~~~~i~e~~~i~~Lv~ll~~------~~~~v~~~a~~~L---~~Ls~~~~ 711 (1008)
+.++..+.-..-......++.+++. ....+...++...++.+.+++.. ..++.+.-++.-. ..+.....
T Consensus 289 i~l~~~P~~s~l~~~~~l~c~~a~~--~sklq~~~~e~~~~~~~~ellf~~~sl~a~~~~~~~i~l~e~~i~~~~~~~~~ 366 (678)
T KOG1293|consen 289 IVLMNDPGLSTLDHTNVLFCILARF--ASKLQLPQHEEATLKTTTELLFICASLAASDEKYRLILLNETLILNHLEYGLE 366 (678)
T ss_pred heeecCCceeehhhhhhhHHHHHHH--HHhhhhHHhhhhhhhhHHHHHHHHHHHhhcchhhhHHHhhhhhhhhhhhhhcc
Confidence 2222211111111112222222211 22344445566667777776643 2344444333321 11211111
Q ss_pred hhHHHhhhcccchHHHHHHhcCCCCHHHHHHHHHHHhcCCC-ChhhHHHHHhcCCHHHHHHHhhCCCCCCCchhhHHHHH
Q 001833 712 EAIIREHVGQKCLETLVTIIQSSHNEEEIASAMGILSKLPE-VPQFTQWLLDAGALPIVLNFLKNGRQNDPNRFQVVENA 790 (1008)
Q Consensus 712 ~~~~~~~~~~~~i~~Lv~lL~~~~~~~v~~~a~~~L~nL~~-~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~v~~~a 790 (1008)
.....++.+......+..+... .+.....+|+-++.+++. -...+.-+-+..+..++++++.+ ++..+...+
T Consensus 367 i~~~k~~l~~~t~~~l~~~~~~-kd~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~d------p~~~i~~~~ 439 (678)
T KOG1293|consen 367 ISLKKEILETTTESHLMCLPPI-KDHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLMD------PEIMIMGIT 439 (678)
T ss_pred hhHHHHHHHHHHHHHHcccccc-ccHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhhC------cchhHHHHH
Confidence 1222223222222222222222 455667777777777665 12222224456688999999987 678899999
Q ss_pred HHHHHHhcCCCCHHHHHHHHHcCChHHHHHHhhcCChHHHHHHHHHHhhhhhcCCCCCCCCCCCCcccccCCCCCCcccc
Q 001833 791 VGALRRFTAPTNLEWQKRAAEAGVIPKLVQLLEYGTTLTKEHAATSLARFSKNSLGLSRPIPKRKGFWCFSPPPEIGCQV 870 (1008)
Q Consensus 791 ~~aL~~L~~~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~v~~~Aa~aL~nLs~~~~~l~~~~~~~~g~~~~~~~~~~~c~v 870 (1008)
+++|+|++.. -...+..+...|++..+..++.+.++.++..+.|+|.++..+.+.
T Consensus 440 lgai~NlVme-fs~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~de------------------------ 494 (678)
T KOG1293|consen 440 LGAICNLVME-FSNLKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLMFNCDE------------------------ 494 (678)
T ss_pred HHHHHHHHhh-cccHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHHhcchH------------------------
Confidence 9999999986 577888999999999999999999999999999999999965432
Q ss_pred cCcccCcccchhHhhccchHHHHHhhcCCChhhhHHHHHHHHhhh
Q 001833 871 HGGLCGIESSFCLLEANAVRPLVRVLEDPDHGACEASLDALVTLI 915 (1008)
Q Consensus 871 h~~~c~~~~~~~l~~~g~i~~Lv~lL~~~d~~v~~~al~aL~~L~ 915 (1008)
+..+.+...-....++.+..++|++|++.++..|.||+
T Consensus 495 -------~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~ 532 (678)
T KOG1293|consen 495 -------EEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLT 532 (678)
T ss_pred -------HHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhh
Confidence 22333333334556677888999999999999999999
No 30
>PRK09687 putative lyase; Provisional
Probab=99.42 E-value=2.7e-11 Score=130.45 Aligned_cols=255 Identities=20% Similarity=0.176 Sum_probs=203.4
Q ss_pred cHHHHHHHHhcCCHHHHHHHHHHHHHHcCChhhHHHHhhcCcHHHHHHHhccCCHHHHHHHHHHHHHhhCCCchhHHHHh
Q 001833 503 YFKHLLQRLSAGPESVKMRMATTLAEMELTDHHKASLLEGNVLGPLLHLVSRGDIQMKKVAVKALRNLSSVPQNGLQMIK 582 (1008)
Q Consensus 503 ~v~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~~~~~~~i~~ 582 (1008)
-++.|+..|.+.+..+|..++.+|..+ +...+++.+..++.+.++.+|..|+++|..|...+.. .
T Consensus 24 ~~~~L~~~L~d~d~~vR~~A~~aL~~~----------~~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~-----~ 88 (280)
T PRK09687 24 NDDELFRLLDDHNSLKRISSIRVLQLR----------GGQDVFRLAIELCSSKNPIERDIGADILSQLGMAKRC-----Q 88 (280)
T ss_pred cHHHHHHHHhCCCHHHHHHHHHHHHhc----------CcchHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccc-----h
Confidence 467889999999999999999999874 3456788899999999999999999999999653322 2
Q ss_pred cCChHHHHHHhcccCCCCcchHHHHHHHHHHHhccccccccCCcccccccchhHHHHHHHhhccCChHHHHHHHHHHHHh
Q 001833 583 EGAVGPLVDLLLHHSSSSSSLREETATAIMHLAVSTMYQESSQTPVTLLESDKEIFMLFSLINLTGPNVQQRILQTFNAL 662 (1008)
Q Consensus 583 ~G~v~~Ll~ll~~~~~~~~~~~~~a~~~L~nLa~~~~~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~aL~~L 662 (1008)
.-+++.|..++.... .+.++..|+.+|+++..... .....++..+...+.+.++.+|..++++|..+
T Consensus 89 ~~a~~~L~~l~~~D~--d~~VR~~A~~aLG~~~~~~~-----------~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~ 155 (280)
T PRK09687 89 DNVFNILNNLALEDK--SACVRASAINATGHRCKKNP-----------LYSPKIVEQSQITAFDKSTNVRFAVAFALSVI 155 (280)
T ss_pred HHHHHHHHHHHhcCC--CHHHHHHHHHHHhccccccc-----------ccchHHHHHHHHHhhCCCHHHHHHHHHHHhcc
Confidence 235677777755333 26799999999999964332 12345677787888888999999999999776
Q ss_pred ccCCChhhHHHHhhhcCChHHHHHhhccCChhHHHHHHHHHHHhccCCChhHHHhhhcccchHHHHHHhcCCCCHHHHHH
Q 001833 663 CRSPSAGNIKTTLTQCSAIPVLVQLCEHDNENVRANAVKLFCCLVDDGDEAIIREHVGQKCLETLVTIIQSSHNEEEIAS 742 (1008)
Q Consensus 663 ~~~~~~~~~~~~i~e~~~i~~Lv~ll~~~~~~v~~~a~~~L~~Ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~v~~~ 742 (1008)
.. ..+++.|+.++.++++.+|..|+.+|..+. .++ ...++.|+.+|.+ .+.+++..
T Consensus 156 ~~-------------~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~-~~~---------~~~~~~L~~~L~D-~~~~VR~~ 211 (280)
T PRK09687 156 ND-------------EAAIPLLINLLKDPNGDVRNWAAFALNSNK-YDN---------PDIREAFVAMLQD-KNEEIRIE 211 (280)
T ss_pred CC-------------HHHHHHHHHHhcCCCHHHHHHHHHHHhcCC-CCC---------HHHHHHHHHHhcC-CChHHHHH
Confidence 42 136999999999999999999999999984 222 2577889999977 56789999
Q ss_pred HHHHHhcCCCChhhHHHHHhcCCHHHHHHHhhCCCCCCCchhhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHHHh
Q 001833 743 AMGILSKLPEVPQFTQWLLDAGALPIVLNFLKNGRQNDPNRFQVVENAVGALRRFTAPTNLEWQKRAAEAGVIPKLVQLL 822 (1008)
Q Consensus 743 a~~~L~nL~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~v~~~a~~aL~~L~~~~~~~~~~~l~~~g~l~~Lv~lL 822 (1008)
|+..|+.+- +..+++.|++.|.++ + ++..++.+|+++.. + .++|.|..++
T Consensus 212 A~~aLg~~~----------~~~av~~Li~~L~~~------~--~~~~a~~ALg~ig~---~---------~a~p~L~~l~ 261 (280)
T PRK09687 212 AIIGLALRK----------DKRVLSVLIKELKKG------T--VGDLIIEAAGELGD---K---------TLLPVLDTLL 261 (280)
T ss_pred HHHHHHccC----------ChhHHHHHHHHHcCC------c--hHHHHHHHHHhcCC---H---------hHHHHHHHHH
Confidence 999999976 335799999999983 2 67789999998886 2 3689999999
Q ss_pred h-cCChHHHHHHHHHHhh
Q 001833 823 E-YGTTLTKEHAATSLAR 839 (1008)
Q Consensus 823 ~-~~~~~v~~~Aa~aL~n 839 (1008)
. ++|..++..|.++|..
T Consensus 262 ~~~~d~~v~~~a~~a~~~ 279 (280)
T PRK09687 262 YKFDDNEIITKAIDKLKR 279 (280)
T ss_pred hhCCChhHHHHHHHHHhc
Confidence 7 7899999999998864
No 31
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=99.40 E-value=1.6e-11 Score=128.93 Aligned_cols=195 Identities=19% Similarity=0.224 Sum_probs=170.9
Q ss_pred hhccCCcHHHHHHHhcc--ChhHHHHHHHHHHHhccCchhhHHhhcccchHHHHHHHhcCCChHHHHHHHHHHHhhcCCc
Q 001833 415 LANGDDAVESIVRSLGR--RIEERKLAVALLLELSTCNTLRDQIGDVQGCILLLVTMASSDDNQASRDAQELLENLSFSD 492 (1008)
Q Consensus 415 i~~~~g~i~~Lv~~L~~--~~~~~~~A~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~~ 492 (1008)
+.+ ++.++.|+.+|.. ++..++.|..++.+.+..+.++..|.+ .|+++.+.+++.++++.++..|+.+|.|++.+.
T Consensus 8 ~l~-~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~nq~~Ir~-~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~ 85 (254)
T PF04826_consen 8 ILE-AQELQKLLCLLESTEDPFIQEKALIALGNSAAFPFNQDIIRD-LGGISLIGSLLNDPNPSVREKALNALNNLSVND 85 (254)
T ss_pred CcC-HHHHHHHHHHHhcCCChHHHHHHHHHHHhhccChhHHHHHHH-cCCHHHHHHHcCCCChHHHHHHHHHHHhcCCCh
Confidence 455 6888999999964 577899999999999999988888887 899999999999999999999999999999999
Q ss_pred ccHHHHHhcCcHHHHHHHHhcC--CHHHHHHHHHHHHHHcCChhhHHHHhhcCcHHHHHHHhccCCHHHHHHHHHHHHHh
Q 001833 493 DNVVQMAKANYFKHLLQRLSAG--PESVKMRMATTLAEMELTDHHKASLLEGNVLGPLLHLVSRGDIQMKKVAVKALRNL 570 (1008)
Q Consensus 493 ~n~~~i~~~g~v~~Lv~~L~~~--~~~~~~~aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~~L 570 (1008)
+|+..+-. +++.+++...+. +.+++..++.+|.+|+..+++...+. +.++.++.+|..|+...|.+++++|.||
T Consensus 86 en~~~Ik~--~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~--~~i~~ll~LL~~G~~~~k~~vLk~L~nL 161 (254)
T PF04826_consen 86 ENQEQIKM--YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLA--NYIPDLLSLLSSGSEKTKVQVLKVLVNL 161 (254)
T ss_pred hhHHHHHH--HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHH--hhHHHHHHHHHcCChHHHHHHHHHHHHh
Confidence 99887743 677777765544 56788899999999999888877664 4799999999999999999999999999
Q ss_pred hCCCchhHHHHhcCChHHHHHHhcccCCCCcchHHHHHHHHHHHhcc
Q 001833 571 SSVPQNGLQMIKEGAVGPLVDLLLHHSSSSSSLREETATAIMHLAVS 617 (1008)
Q Consensus 571 ~~~~~~~~~i~~~G~v~~Ll~ll~~~~~~~~~~~~~a~~~L~nLa~~ 617 (1008)
+.++.+...++.+++...++.++..... .++...++....|+..+
T Consensus 162 S~np~~~~~Ll~~q~~~~~~~Lf~~~~~--~~~l~~~l~~~~ni~~~ 206 (254)
T PF04826_consen 162 SENPDMTRELLSAQVLSSFLSLFNSSES--KENLLRVLTFFENINEN 206 (254)
T ss_pred ccCHHHHHHHHhccchhHHHHHHccCCc--cHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999987643 57889999999999763
No 32
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.38 E-value=8.6e-11 Score=147.77 Aligned_cols=278 Identities=19% Similarity=0.208 Sum_probs=221.1
Q ss_pred hcCcHHHHHHHHhcCCHHHHHHHHHHHHHHcCChhhHHHHhhcCcHHHHHHHhccCCHHHHHHHHHHHHHhhCCCchhHH
Q 001833 500 KANYFKHLLQRLSAGPESVKMRMATTLAEMELTDHHKASLLEGNVLGPLLHLVSRGDIQMKKVAVKALRNLSSVPQNGLQ 579 (1008)
Q Consensus 500 ~~g~v~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~~~~~~~ 579 (1008)
..+.++.|+..|.++++.+|..|+.+|+.+ ...++++.|+.+|.+.++.++..|+.+|..+....
T Consensus 619 ~~~~~~~L~~~L~D~d~~VR~~Av~~L~~~----------~~~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~----- 683 (897)
T PRK13800 619 DAPSVAELAPYLADPDPGVRRTAVAVLTET----------TPPGFGPALVAALGDGAAAVRRAAAEGLRELVEVL----- 683 (897)
T ss_pred cchhHHHHHHHhcCCCHHHHHHHHHHHhhh----------cchhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcc-----
Confidence 456778899999999999999999999885 34668899999999999999999999998885311
Q ss_pred HHhcCChHHHHHHhcccCCCCcchHHHHHHHHHHHhccccccccCCcccccccchhHHHHHHHhhccCChHHHHHHHHHH
Q 001833 580 MIKEGAVGPLVDLLLHHSSSSSSLREETATAIMHLAVSTMYQESSQTPVTLLESDKEIFMLFSLINLTGPNVQQRILQTF 659 (1008)
Q Consensus 580 i~~~G~v~~Ll~ll~~~~~~~~~~~~~a~~~L~nLa~~~~~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~aL 659 (1008)
...+.|...|.+.+ +.++..|+.+|..+.. +....++..+...++.++..++++|
T Consensus 684 ----~~~~~L~~~L~~~d---~~VR~~A~~aL~~~~~------------------~~~~~l~~~L~D~d~~VR~~Av~aL 738 (897)
T PRK13800 684 ----PPAPALRDHLGSPD---PVVRAAALDVLRALRA------------------GDAALFAAALGDPDHRVRIEAVRAL 738 (897)
T ss_pred ----CchHHHHHHhcCCC---HHHHHHHHHHHHhhcc------------------CCHHHHHHHhcCCCHHHHHHHHHHH
Confidence 12356777777533 6889999998888742 1134577888999999999999999
Q ss_pred HHhccCCChhhHHHHhhhcCChHHHHHhhccCChhHHHHHHHHHHHhccCCChhHHHhhhcccchHHHHHHhcCCCCHHH
Q 001833 660 NALCRSPSAGNIKTTLTQCSAIPVLVQLCEHDNENVRANAVKLFCCLVDDGDEAIIREHVGQKCLETLVTIIQSSHNEEE 739 (1008)
Q Consensus 660 ~~L~~~~~~~~~~~~i~e~~~i~~Lv~ll~~~~~~v~~~a~~~L~~Ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~v 739 (1008)
..+- ..+.|..++.++++++|..++.+|..+. .. ....++.|..++.+ +++.+
T Consensus 739 ~~~~----------------~~~~l~~~l~D~~~~VR~~aa~aL~~~~-~~---------~~~~~~~L~~ll~D-~d~~V 791 (897)
T PRK13800 739 VSVD----------------DVESVAGAATDENREVRIAVAKGLATLG-AG---------GAPAGDAVRALTGD-PDPLV 791 (897)
T ss_pred hccc----------------CcHHHHHHhcCCCHHHHHHHHHHHHHhc-cc---------cchhHHHHHHHhcC-CCHHH
Confidence 8762 1345778899999999999999999996 21 12347888888888 56889
Q ss_pred HHHHHHHHhcCCCChhhHHHHHhcCCHHHHHHHhhCCCCCCCchhhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHH
Q 001833 740 IASAMGILSKLPEVPQFTQWLLDAGALPIVLNFLKNGRQNDPNRFQVVENAVGALRRFTAPTNLEWQKRAAEAGVIPKLV 819 (1008)
Q Consensus 740 ~~~a~~~L~nL~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~v~~~a~~aL~~L~~~~~~~~~~~l~~~g~l~~Lv 819 (1008)
+..|+..|+++...+. .++.+...|.+ .++.+|..|+.+|..+.. ...++.|+
T Consensus 792 R~aA~~aLg~~g~~~~---------~~~~l~~aL~d------~d~~VR~~Aa~aL~~l~~------------~~a~~~L~ 844 (897)
T PRK13800 792 RAAALAALAELGCPPD---------DVAAATAALRA------SAWQVRQGAARALAGAAA------------DVAVPALV 844 (897)
T ss_pred HHHHHHHHHhcCCcch---------hHHHHHHHhcC------CChHHHHHHHHHHHhccc------------cchHHHHH
Confidence 9999999999865321 23567888888 678899999999998764 23458999
Q ss_pred HHhhcCChHHHHHHHHHHhhhhhcCCCCCCCCCCCCcccccCCCCCCcccccCcccCcccchhHhhccchHHHHHhhcCC
Q 001833 820 QLLEYGTTLTKEHAATSLARFSKNSLGLSRPIPKRKGFWCFSPPPEIGCQVHGGLCGIESSFCLLEANAVRPLVRVLEDP 899 (1008)
Q Consensus 820 ~lL~~~~~~v~~~Aa~aL~nLs~~~~~l~~~~~~~~g~~~~~~~~~~~c~vh~~~c~~~~~~~l~~~g~i~~Lv~lL~~~ 899 (1008)
.+|.+.++.||..|+++|..+.. .....+.|...+.+.
T Consensus 845 ~~L~D~~~~VR~~A~~aL~~~~~------------------------------------------~~~a~~~L~~al~D~ 882 (897)
T PRK13800 845 EALTDPHLDVRKAAVLALTRWPG------------------------------------------DPAARDALTTALTDS 882 (897)
T ss_pred HHhcCCCHHHHHHHHHHHhccCC------------------------------------------CHHHHHHHHHHHhCC
Confidence 99999999999999999999731 112578888999999
Q ss_pred ChhhhHHHHHHHHh
Q 001833 900 DHGACEASLDALVT 913 (1008)
Q Consensus 900 d~~v~~~al~aL~~ 913 (1008)
|+.|+..|..||..
T Consensus 883 d~~Vr~~A~~aL~~ 896 (897)
T PRK13800 883 DADVRAYARRALAH 896 (897)
T ss_pred CHHHHHHHHHHHhh
Confidence 99999999999863
No 33
>PRK09687 putative lyase; Provisional
Probab=99.37 E-value=7.8e-11 Score=126.87 Aligned_cols=255 Identities=14% Similarity=0.139 Sum_probs=199.6
Q ss_pred hHHHHHHHhcCCChHHHHHHHHHHHhhcCCcccHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHHcCChhhHHHHhh
Q 001833 462 CILLLVTMASSDDNQASRDAQELLENLSFSDDNVVQMAKANYFKHLLQRLSAGPESVKMRMATTLAEMELTDHHKASLLE 541 (1008)
Q Consensus 462 ~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~~~n~~~i~~~g~v~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~~~~k~~i~~ 541 (1008)
.++.|..+|.+.+..++..++.+|..+- ...+++.+..++.++++.+|..++++|+.+...+.. .
T Consensus 24 ~~~~L~~~L~d~d~~vR~~A~~aL~~~~----------~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~-----~ 88 (280)
T PRK09687 24 NDDELFRLLDDHNSLKRISSIRVLQLRG----------GQDVFRLAIELCSSKNPIERDIGADILSQLGMAKRC-----Q 88 (280)
T ss_pred cHHHHHHHHhCCCHHHHHHHHHHHHhcC----------cchHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccc-----h
Confidence 4688999999999999999999997763 345677788888999999999999999998653322 1
Q ss_pred cCcHHHHHHH-hccCCHHHHHHHHHHHHHhhCCCchhHHHHhcCChHHHHHHhcccCCCCcchHHHHHHHHHHHhccccc
Q 001833 542 GNVLGPLLHL-VSRGDIQMKKVAVKALRNLSSVPQNGLQMIKEGAVGPLVDLLLHHSSSSSSLREETATAIMHLAVSTMY 620 (1008)
Q Consensus 542 ~g~i~~Lv~l-L~~~~~~~~~~A~~aL~~L~~~~~~~~~i~~~G~v~~Ll~ll~~~~~~~~~~~~~a~~~L~nLa~~~~~ 620 (1008)
...++.|..+ +.+.++.++..|+.+|++++....+. ...++..+...+.+.+ +.++..++++|..+.
T Consensus 89 ~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~----~~~a~~~l~~~~~D~~---~~VR~~a~~aLg~~~----- 156 (280)
T PRK09687 89 DNVFNILNNLALEDKSACVRASAINATGHRCKKNPLY----SPKIVEQSQITAFDKS---TNVRFAVAFALSVIN----- 156 (280)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc----chHHHHHHHHHhhCCC---HHHHHHHHHHHhccC-----
Confidence 2467788877 67889999999999999997533211 1113445555555443 679999999997553
Q ss_pred cccCCcccccccchhHHHHHHHhhccCChHHHHHHHHHHHHhccCCChhhHHHHhhhcCChHHHHHhhccCChhHHHHHH
Q 001833 621 QESSQTPVTLLESDKEIFMLFSLINLTGPNVQQRILQTFNALCRSPSAGNIKTTLTQCSAIPVLVQLCEHDNENVRANAV 700 (1008)
Q Consensus 621 ~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~aL~~L~~~~~~~~~~~~i~e~~~i~~Lv~ll~~~~~~v~~~a~ 700 (1008)
++.+++.|+.+++..++.++..++.+|..+... .+ .+++.|+.++.+.+.++|..|+
T Consensus 157 ------------~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~--~~---------~~~~~L~~~L~D~~~~VR~~A~ 213 (280)
T PRK09687 157 ------------DEAAIPLLINLLKDPNGDVRNWAAFALNSNKYD--NP---------DIREAFVAMLQDKNEEIRIEAI 213 (280)
T ss_pred ------------CHHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCC--CH---------HHHHHHHHHhcCCChHHHHHHH
Confidence 357899999999999999999999999998332 22 3578899999999999999999
Q ss_pred HHHHHhccCCChhHHHhhhcccchHHHHHHhcCCCCHHHHHHHHHHHhcCCCChhhHHHHHhcCCHHHHHHHhhCCCCCC
Q 001833 701 KLFCCLVDDGDEAIIREHVGQKCLETLVTIIQSSHNEEEIASAMGILSKLPEVPQFTQWLLDAGALPIVLNFLKNGRQND 780 (1008)
Q Consensus 701 ~~L~~Ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~v~~~a~~~L~nL~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~~ 780 (1008)
++|..+- ...+++.|++.|.++. ++..++.+|+++.. ..++|.|..++...
T Consensus 214 ~aLg~~~------------~~~av~~Li~~L~~~~---~~~~a~~ALg~ig~----------~~a~p~L~~l~~~~---- 264 (280)
T PRK09687 214 IGLALRK------------DKRVLSVLIKELKKGT---VGDLIIEAAGELGD----------KTLLPVLDTLLYKF---- 264 (280)
T ss_pred HHHHccC------------ChhHHHHHHHHHcCCc---hHHHHHHHHHhcCC----------HhHHHHHHHHHhhC----
Confidence 9999874 2368999999998843 56788899999884 35789999999842
Q ss_pred CchhhHHHHHHHHHHH
Q 001833 781 PNRFQVVENAVGALRR 796 (1008)
Q Consensus 781 ~~~~~v~~~a~~aL~~ 796 (1008)
.+..++..+.++|..
T Consensus 265 -~d~~v~~~a~~a~~~ 279 (280)
T PRK09687 265 -DDNEIITKAIDKLKR 279 (280)
T ss_pred -CChhHHHHHHHHHhc
Confidence 577888888888753
No 34
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=99.35 E-value=1.2e-11 Score=122.09 Aligned_cols=218 Identities=23% Similarity=0.323 Sum_probs=137.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhh-------h-hhHHHHhhhHHHHHHHHHHHHHHHHHhccCCCCccccchHHHHHHH
Q 001833 70 GLNSAIEILNREIKGAKELTTECSK-------R-NKVYLLMNCRAIVKRLKDTAREISQALGILPLASLDLSTDIIEEIE 141 (1008)
Q Consensus 70 ~~~~~l~~L~~~l~~a~~Ll~~c~~-------~-Skl~l~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~s~~~~e~~~ 141 (1008)
-...++|-|. ++.-....++|.. . =+-|++.++...+..|-+....|.++.++.--+.+...+++-+++
T Consensus 47 ~tnralchlk--~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI~~Lqra~sl~r~~~~~~~~di~~~L- 123 (284)
T KOG4642|consen 47 YTNRALCHLK--LKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAIKVLQRAYSLLREQPFTFGDDIPKAL- 123 (284)
T ss_pred hhhHHHHHHH--hhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcCCCCCcchHHHHH-
Confidence 3466777665 5555555556652 2 245999999999999999999999998877666666556655544
Q ss_pred HHHHHHhhhhhcc-c-hhHHHHHHHHHh-----hhhccCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHhh
Q 001833 142 KVCDNMQRAEFRA-A-IAEEEILEKVES-----GIQERNVDRSYANHLLSLIADAVGISTERSALKKEFDEFKSEIENSR 214 (1008)
Q Consensus 142 ~~~~~~~~~~~~~-~-~~~~~~~~~~~~-----~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~ 214 (1008)
++|+... . ..++++..+++- .+.++ +.+. + +.+.-+. |- +.+ +++..+..++
T Consensus 124 ------~~ak~~~w~v~e~~Ri~Q~~El~~yl~slie~--~~~~--~-~s~~~~N-~~--sde----~~k~~q~~~~--- 182 (284)
T KOG4642|consen 124 ------RDAKKKRWEVSEEKRIRQELELHSYLESLIEG--DRER--E-LSEWQEN-GE--SDE----HLKTMQVPIE--- 182 (284)
T ss_pred ------HHHHhCccchhHHHHHHHHhhHHHHHHHHhcc--chhh--H-HHHHHHc-CC--ChH----HHhhhcchhH---
Confidence 3443222 1 233344333321 01110 1000 0 0000000 10 111 1111111111
Q ss_pred hhhhhHHHHHHHHHHHHHhhhhcCCCchhhhhhhhcccccCCCCCCCCCccccccccccccCCceeccCcccccHHHHHH
Q 001833 215 MRKDQAEAVQMDQIIALLERADAASSPREKEMKYFSKRKSLGSQPLEPLQSFYCPITRDVMVDPVETSSGQTFERSAIEK 294 (1008)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~cpi~~~~m~dpv~~~~g~t~~r~~i~~ 294 (1008)
..-...+..+-.++++++. ++ ...+.|+.++|.|+.++|+|||+.++|.||+|..|.+
T Consensus 183 ----~~~d~~~kel~elf~~v~e-------------~r-----k~rEvpd~lcgkIt~el~~~pvi~psgIty~ra~I~E 240 (284)
T KOG4642|consen 183 ----QDHDHTTKELSELFSKVDE-------------KR-----KKREVPDYLCGKITLELMREPVITPSGITYDRADIEE 240 (284)
T ss_pred ----HHHHHHHHHHHHHHHHHHH-------------Hh-----ccccccchhhhhhhHHhhcCCccCccccchhHHHHHH
Confidence 1123344555556665531 11 1245779999999999999999999999999999999
Q ss_pred HHhcCCCCCCCcCccCCCCCCccCHhhHHHHHHHHHhcc
Q 001833 295 WFSDGNNLCPLTMTVLDTSILRPNKTLRQSIEEWKDRNT 333 (1008)
Q Consensus 295 w~~~~~~~cp~~~~~l~~~~l~pN~~l~~~I~~w~~~~~ 333 (1008)
++.+-..+.|+|+.+|+...++||++++..|+.|...|.
T Consensus 241 hl~rvghfdpvtr~~Lte~q~ipN~alkevIa~fl~~n~ 279 (284)
T KOG4642|consen 241 HLQRVGHFDPVTRWPLTEYQLIPNLALKEVIAAFLKENE 279 (284)
T ss_pred HHHHhccCCchhcccCCHHhhccchHHHHHHHHHHHhcc
Confidence 999866789999999999999999999999999987764
No 35
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.34 E-value=2.4e-10 Score=143.79 Aligned_cols=278 Identities=15% Similarity=0.144 Sum_probs=219.5
Q ss_pred hcCChHHHHHHhcccCCCCcchHHHHHHHHHHHhccccccccCCcccccccchhHHHHHHHhhccCChHHHHHHHHHHHH
Q 001833 582 KEGAVGPLVDLLLHHSSSSSSLREETATAIMHLAVSTMYQESSQTPVTLLESDKEIFMLFSLINLTGPNVQQRILQTFNA 661 (1008)
Q Consensus 582 ~~G~v~~Ll~ll~~~~~~~~~~~~~a~~~L~nLa~~~~~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~aL~~ 661 (1008)
..+.++.|+..|.+.. +.++..|+.+|..+. .+..++.|...++..++.++..++.+|..
T Consensus 619 ~~~~~~~L~~~L~D~d---~~VR~~Av~~L~~~~-----------------~~~~~~~L~~aL~D~d~~VR~~Aa~aL~~ 678 (897)
T PRK13800 619 DAPSVAELAPYLADPD---PGVRRTAVAVLTETT-----------------PPGFGPALVAALGDGAAAVRRAAAEGLRE 678 (897)
T ss_pred cchhHHHHHHHhcCCC---HHHHHHHHHHHhhhc-----------------chhHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 4456788999997554 789999999998764 24678899999999999999999999988
Q ss_pred hccCCChhhHHHHhhhcCChHHHHHhhccCChhHHHHHHHHHHHhccCCChhHHHhhhcccchHHHHHHhcCCCCHHHHH
Q 001833 662 LCRSPSAGNIKTTLTQCSAIPVLVQLCEHDNENVRANAVKLFCCLVDDGDEAIIREHVGQKCLETLVTIIQSSHNEEEIA 741 (1008)
Q Consensus 662 L~~~~~~~~~~~~i~e~~~i~~Lv~ll~~~~~~v~~~a~~~L~~Ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~v~~ 741 (1008)
+.... ...+.|..+|.++++.+|..++.+|..+. . +....|+..|.+ .+..++.
T Consensus 679 l~~~~------------~~~~~L~~~L~~~d~~VR~~A~~aL~~~~-~------------~~~~~l~~~L~D-~d~~VR~ 732 (897)
T PRK13800 679 LVEVL------------PPAPALRDHLGSPDPVVRAAALDVLRALR-A------------GDAALFAAALGD-PDHRVRI 732 (897)
T ss_pred HHhcc------------CchHHHHHHhcCCCHHHHHHHHHHHHhhc-c------------CCHHHHHHHhcC-CCHHHHH
Confidence 85321 12457778889999999999999998874 2 123456777877 6778999
Q ss_pred HHHHHHhcCCCChhhHHHHHhcCCHHHHHHHhhCCCCCCCchhhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHHH
Q 001833 742 SAMGILSKLPEVPQFTQWLLDAGALPIVLNFLKNGRQNDPNRFQVVENAVGALRRFTAPTNLEWQKRAAEAGVIPKLVQL 821 (1008)
Q Consensus 742 ~a~~~L~nL~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~v~~~a~~aL~~L~~~~~~~~~~~l~~~g~l~~Lv~l 821 (1008)
.|+.+|+.+.. .+.|..++.+ .+..+|..++.+|..+... ....++.|..+
T Consensus 733 ~Av~aL~~~~~-------------~~~l~~~l~D------~~~~VR~~aa~aL~~~~~~----------~~~~~~~L~~l 783 (897)
T PRK13800 733 EAVRALVSVDD-------------VESVAGAATD------ENREVRIAVAKGLATLGAG----------GAPAGDAVRAL 783 (897)
T ss_pred HHHHHHhcccC-------------cHHHHHHhcC------CCHHHHHHHHHHHHHhccc----------cchhHHHHHHH
Confidence 99999988632 2446778888 6889999999999998763 12237889999
Q ss_pred hhcCChHHHHHHHHHHhhhhhcCCCCCCCCCCCCcccccCCCCCCcccccCcccCcccchhHhhccchHHHHHhhcCCCh
Q 001833 822 LEYGTTLTKEHAATSLARFSKNSLGLSRPIPKRKGFWCFSPPPEIGCQVHGGLCGIESSFCLLEANAVRPLVRVLEDPDH 901 (1008)
Q Consensus 822 L~~~~~~v~~~Aa~aL~nLs~~~~~l~~~~~~~~g~~~~~~~~~~~c~vh~~~c~~~~~~~l~~~g~i~~Lv~lL~~~d~ 901 (1008)
+.+.++.+|..|+.+|+++... ...+..++..|.++++
T Consensus 784 l~D~d~~VR~aA~~aLg~~g~~------------------------------------------~~~~~~l~~aL~d~d~ 821 (897)
T PRK13800 784 TGDPDPLVRAAALAALAELGCP------------------------------------------PDDVAAATAALRASAW 821 (897)
T ss_pred hcCCCHHHHHHHHHHHHhcCCc------------------------------------------chhHHHHHHHhcCCCh
Confidence 9999999999999999998621 1134678899999999
Q ss_pred hhhHHHHHHHHhhhcccccchhhHHHHhcCchHHHHHHhcCCChHHHHHHHHHHHHHhcChHHHHHhccccCchhhhhcc
Q 001833 902 GACEASLDALVTLIEGERLQNGSKVLEDANAIDRMVRFLSSPSPKLQEKALDSVERIFRLPEFKQKYGKSAQMPLVDLTQ 981 (1008)
Q Consensus 902 ~v~~~al~aL~~L~~~~~~~~~~~~i~~~~~i~~l~~ll~~~~~~l~~~a~~~L~~l~~~~~~~~~~~~~~~~~Lv~l~~ 981 (1008)
.||..|+.+|..+-. ...++.|..++.++++.||..|++.|.++-..++ +...|..++.
T Consensus 822 ~VR~~Aa~aL~~l~~-------------~~a~~~L~~~L~D~~~~VR~~A~~aL~~~~~~~~--------a~~~L~~al~ 880 (897)
T PRK13800 822 QVRQGAARALAGAAA-------------DVAVPALVEALTDPHLDVRKAAVLALTRWPGDPA--------ARDALTTALT 880 (897)
T ss_pred HHHHHHHHHHHhccc-------------cchHHHHHHHhcCCCHHHHHHHHHHHhccCCCHH--------HHHHHHHHHh
Confidence 999999999998751 1246889999999999999999999987522222 2356788999
Q ss_pred cCCchhhHHHHHHHHH
Q 001833 982 RGNSSMKSLSARVLAH 997 (1008)
Q Consensus 982 ~~~~~~~~~Aa~~L~~ 997 (1008)
+.++.+|+.|+.+|.+
T Consensus 881 D~d~~Vr~~A~~aL~~ 896 (897)
T PRK13800 881 DSDADVRAYARRALAH 896 (897)
T ss_pred CCCHHHHHHHHHHHhh
Confidence 9999999999999975
No 36
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=99.31 E-value=2.9e-10 Score=119.57 Aligned_cols=240 Identities=16% Similarity=0.211 Sum_probs=180.7
Q ss_pred cchhHHHHHHHhhc-cCChHHHHHHHHHHHHhccCCChhhHHHHhhhcCChHHHHHhhccCChhHHHHHHHHHHHhccCC
Q 001833 632 ESDKEIFMLFSLIN-LTGPNVQQRILQTFNALCRSPSAGNIKTTLTQCSAIPVLVQLCEHDNENVRANAVKLFCCLVDDG 710 (1008)
Q Consensus 632 ~~~~~i~~L~~ll~-~~~~~v~~~al~aL~~L~~~~~~~~~~~~i~e~~~i~~Lv~ll~~~~~~v~~~a~~~L~~Ls~~~ 710 (1008)
.+.+.+..|+.+|+ +.+|.+++.++.++.+.+.+ +..++.+++.|+++.+..++.++++.++..|+++|.|++...
T Consensus 9 l~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf---~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~ 85 (254)
T PF04826_consen 9 LEAQELQKLLCLLESTEDPFIQEKALIALGNSAAF---PFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVND 85 (254)
T ss_pred cCHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccC---hhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCCh
Confidence 56678899999999 46899999999999998875 566788999999999999999999999999999999998332
Q ss_pred ChhHHHhhhcccchHHHHHHhcCC-CCHHHHHHHHHHHhcCCCChhhHHHHHhcCCHHHHHHHhhCCCCCCCchhhHHHH
Q 001833 711 DEAIIREHVGQKCLETLVTIIQSS-HNEEEIASAMGILSKLPEVPQFTQWLLDAGALPIVLNFLKNGRQNDPNRFQVVEN 789 (1008)
Q Consensus 711 ~~~~~~~~~~~~~i~~Lv~lL~~~-~~~~v~~~a~~~L~nL~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~v~~~ 789 (1008)
. +...+ + ..++.+.+.+.+. -+.+++.+++++|.||+-.++....+. +.++.++.+|.. .+..++..
T Consensus 86 e--n~~~I-k-~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~--~~i~~ll~LL~~------G~~~~k~~ 153 (254)
T PF04826_consen 86 E--NQEQI-K-MYIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLA--NYIPDLLSLLSS------GSEKTKVQ 153 (254)
T ss_pred h--hHHHH-H-HHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHH--hhHHHHHHHHHc------CChHHHHH
Confidence 2 22222 2 2466666654443 466889999999999988655555553 479999999999 46679999
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHcCChHHHHHHhhcC-ChHHHHHHHHHHhhhhhcCCCCCCCCCCCCcccccCCCCCCcc
Q 001833 790 AVGALRRFTAPTNLEWQKRAAEAGVIPKLVQLLEYG-TTLTKEHAATSLARFSKNSLGLSRPIPKRKGFWCFSPPPEIGC 868 (1008)
Q Consensus 790 a~~aL~~L~~~~~~~~~~~l~~~g~l~~Lv~lL~~~-~~~v~~~Aa~aL~nLs~~~~~l~~~~~~~~g~~~~~~~~~~~c 868 (1008)
++++|.||+. ++...+.+..+++++.++.++... +.++...+.+...|+...-.. ++ ..+
T Consensus 154 vLk~L~nLS~--np~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~~~--------~~-~~~-------- 214 (254)
T PF04826_consen 154 VLKVLVNLSE--NPDMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINENIKK--------EA-YVF-------- 214 (254)
T ss_pred HHHHHHHhcc--CHHHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHhhCc--------cc-cee--------
Confidence 9999999999 799999999999999999999876 568899999999999754321 10 000
Q ss_pred cccCcccCcccchhHh-hcc-chHHHHHhhcCCChhhhHHH
Q 001833 869 QVHGGLCGIESSFCLL-EAN-AVRPLVRVLEDPDHGACEAS 907 (1008)
Q Consensus 869 ~vh~~~c~~~~~~~l~-~~g-~i~~Lv~lL~~~d~~v~~~a 907 (1008)
+...-+.+..+.+. +.+ ..+.|..+..++|++|++.+
T Consensus 215 --~~~~~~~~~L~~~~~e~~~~~~~l~~l~~h~d~ev~~~v 253 (254)
T PF04826_consen 215 --VQDDFSEDSLFSLFGESSQLAKKLQALANHPDPEVKEQV 253 (254)
T ss_pred --ccccCCchhHHHHHccHHHHHHHHHHHHcCCCHHHhhhc
Confidence 00001122222222 222 56677788888999888754
No 37
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.28 E-value=2.4e-10 Score=127.29 Aligned_cols=467 Identities=18% Similarity=0.224 Sum_probs=262.3
Q ss_pred CcHHHHHHHhcc----ChhHHHHHHHHHHHhccCchhhHHhhcccchHHHHHHHhcCCChHHHHHHHHHHHhhcCCcccH
Q 001833 420 DAVESIVRSLGR----RIEERKLAVALLLELSTCNTLRDQIGDVQGCILLLVTMASSDDNQASRDAQELLENLSFSDDNV 495 (1008)
Q Consensus 420 g~i~~Lv~~L~~----~~~~~~~A~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~~~n~ 495 (1008)
.++..+..+|.+ +.+++.++...+..+-..|++..-+.- .|++ +++.+..++..|-..|.|=.....+.
T Consensus 10 ~~l~ql~~lLk~s~Spn~~~~~~~~~~leq~~~~pdfnnYL~~------IL~~-~~~~d~~~Rs~aGLlLKNnvr~~~~~ 82 (885)
T KOG2023|consen 10 QGLQQLAQLLKNSQSPNSETRNNVQEKLEQFNLFPDFNNYLIY------ILIR-AKSEDVPTRSLAGLLLKNNVRGHYNS 82 (885)
T ss_pred HHHHHHHHHHHhccCCChHHHHHHHHHHHHHhcccchhceeeE------EEec-ccccchhHHHHhhhhHhccccccccC
Confidence 456666677743 456777777777777666654433221 0111 23455566666666665542211110
Q ss_pred HHHHhcCcHHH-HHHHHhcCCHHHHHHHHHHHHHHcCChhhHHHHhhcCcHHHHHHHhccCCHHHHHHHHHHHHHhhCCC
Q 001833 496 VQMAKANYFKH-LLQRLSAGPESVKMRMATTLAEMELTDHHKASLLEGNVLGPLLHLVSRGDIQMKKVAVKALRNLSSVP 574 (1008)
Q Consensus 496 ~~i~~~g~v~~-Lv~~L~~~~~~~~~~aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~~ 574 (1008)
..--..+++.. .+.-+.+.++-+|...--++..++....... -..++|.|..+|.+++....+.|.+||.++|.+.
T Consensus 83 ~~~~~~~yiKs~~l~~lgd~~~lIr~tvGivITTI~s~~~~~~---wpelLp~L~~~L~s~d~n~~EgA~~AL~KIcEDs 159 (885)
T KOG2023|consen 83 IPSEVLDYIKSECLHGLGDASPLIRATVGIVITTIASTGGLQH---WPELLPQLCELLDSPDYNTCEGAFGALQKICEDS 159 (885)
T ss_pred CChHHHHHHHHHHHhhccCchHHHHhhhhheeeeeeccccccc---chhHHHHHHHHhcCCcccccchhHHHHHHHHhhh
Confidence 00011122222 2233333333333332222233322221100 1457899999999999999999999999999643
Q ss_pred chh--HHHHhc---CChHHHHHHhcccCCCCcchHHHHHHHHHHHhccccccccCCcccccccchhHHHHHHHhhccCCh
Q 001833 575 QNG--LQMIKE---GAVGPLVDLLLHHSSSSSSLREETATAIMHLAVSTMYQESSQTPVTLLESDKEIFMLFSLINLTGP 649 (1008)
Q Consensus 575 ~~~--~~i~~~---G~v~~Ll~ll~~~~~~~~~~~~~a~~~L~nLa~~~~~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~ 649 (1008)
... ...... -.+|.++++.+.++ +.++..|+.++-......... -...=+..+..++.+-+..+|
T Consensus 160 a~~lds~~~~rpl~~mipkfl~f~~h~s---pkiRs~A~~cvNq~i~~~~qa-------l~~~iD~Fle~lFalanD~~~ 229 (885)
T KOG2023|consen 160 AQFLDSDVLTRPLNIMIPKFLQFFKHPS---PKIRSHAVGCVNQFIIIQTQA-------LYVHIDKFLEILFALANDEDP 229 (885)
T ss_pred HHHHhhhcccCchHHhHHHHHHHHhCCC---hhHHHHHHhhhhheeecCcHH-------HHHHHHHHHHHHHHHccCCCH
Confidence 211 111111 24888999998765 778999888776554311100 011113456677777778899
Q ss_pred HHHHHHHHHHHHhccCCChhhHHHHhhhcCChHHHHHhhccCChhHHHHHHHHHHHhccCCChh-HHHhhhcccchHHHH
Q 001833 650 NVQQRILQTFNALCRSPSAGNIKTTLTQCSAIPVLVQLCEHDNENVRANAVKLFCCLVDDGDEA-IIREHVGQKCLETLV 728 (1008)
Q Consensus 650 ~v~~~al~aL~~L~~~~~~~~~~~~i~e~~~i~~Lv~ll~~~~~~v~~~a~~~L~~Ls~~~~~~-~~~~~~~~~~i~~Lv 728 (1008)
++|.+.+++|.-|.... .+.....+ .++++.++..-++.++++-..||.....++...... ....++ ...+|.|+
T Consensus 230 eVRk~vC~alv~Llevr-~dkl~phl--~~IveyML~~tqd~dE~VALEACEFwla~aeqpi~~~~L~p~l-~kliPvLl 305 (885)
T KOG2023|consen 230 EVRKNVCRALVFLLEVR-PDKLVPHL--DNIVEYMLQRTQDVDENVALEACEFWLALAEQPICKEVLQPYL-DKLIPVLL 305 (885)
T ss_pred HHHHHHHHHHHHHHHhc-HHhcccch--HHHHHHHHHHccCcchhHHHHHHHHHHHHhcCcCcHHHHHHHH-HHHHHHHH
Confidence 99999999999987532 11211112 245677777778889999999999999998443222 222222 24555555
Q ss_pred HHhcCCCC-------------------------------------------------------HHHHHHHHHHHhcCCCC
Q 001833 729 TIIQSSHN-------------------------------------------------------EEEIASAMGILSKLPEV 753 (1008)
Q Consensus 729 ~lL~~~~~-------------------------------------------------------~~v~~~a~~~L~nL~~~ 753 (1008)
+-+..++. ...+...+.+|.-|+.
T Consensus 306 ~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVLan- 384 (885)
T KOG2023|consen 306 SGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDAFSDWNLRKCSAAALDVLAN- 384 (885)
T ss_pred ccCccccccHHHhcCccccccCCchhhhccchhhhchhccCccccccccccccccccccccccccHhhccHHHHHHHHH-
Confidence 43221110 0122222223322222
Q ss_pred hhhHHHHHhcCCHHHHHHHhhCCCCCCCchhhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHHHhhcCChHHHHHH
Q 001833 754 PQFTQWLLDAGALPIVLNFLKNGRQNDPNRFQVVENAVGALRRFTAPTNLEWQKRAAEAGVIPKLVQLLEYGTTLTKEHA 833 (1008)
Q Consensus 754 ~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~v~~~a~~aL~~L~~~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~v~~~A 833 (1008)
+.....++.+.-+|+..-.+ ....++|.++.+|+.++.+........+ ..++|.|+.+|.+..+-||.-+
T Consensus 385 ------vf~~elL~~l~PlLk~~L~~--~~W~vrEagvLAlGAIAEGcM~g~~p~L--peLip~l~~~L~DKkplVRsIT 454 (885)
T KOG2023|consen 385 ------VFGDELLPILLPLLKEHLSS--EEWKVREAGVLALGAIAEGCMQGFVPHL--PELIPFLLSLLDDKKPLVRSIT 454 (885)
T ss_pred ------hhHHHHHHHHHHHHHHHcCc--chhhhhhhhHHHHHHHHHHHhhhcccch--HHHHHHHHHHhccCccceeeee
Confidence 22333444455444442111 6778999999999999976211111111 2478999999999999999999
Q ss_pred HHHHhhhhhcCCCCCCCCCCCCcccccCCCCCCcccccCcccCcccchhHhhccchHHHHHhhcCCChhhhHHHHHHHHh
Q 001833 834 ATSLARFSKNSLGLSRPIPKRKGFWCFSPPPEIGCQVHGGLCGIESSFCLLEANAVRPLVRVLEDPDHGACEASLDALVT 913 (1008)
Q Consensus 834 a~aL~nLs~~~~~l~~~~~~~~g~~~~~~~~~~~c~vh~~~c~~~~~~~l~~~g~i~~Lv~lL~~~d~~v~~~al~aL~~ 913 (1008)
||+|+.++.-.- |.+.+ ..+ ..++.+|++.+-+++..|+++|+.|+.+
T Consensus 455 CWTLsRys~wv~-----------------------------~~~~~-~~f--~pvL~~ll~~llD~NK~VQEAAcsAfAt 502 (885)
T KOG2023|consen 455 CWTLSRYSKWVV-----------------------------QDSRD-EYF--KPVLEGLLRRLLDSNKKVQEAACSAFAT 502 (885)
T ss_pred eeeHhhhhhhHh-----------------------------cCChH-hhh--HHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 999999983211 11110 111 1245566666668999999999999999
Q ss_pred hh-c-ccccchhhHHHHhcCchHHHHHHh---cCCChHHHHHHHHHHHHH
Q 001833 914 LI-E-GERLQNGSKVLEDANAIDRMVRFL---SSPSPKLQEKALDSVERI 958 (1008)
Q Consensus 914 L~-~-~~~~~~~~~~i~~~~~i~~l~~ll---~~~~~~l~~~a~~~L~~l 958 (1008)
+- + +....++...| ++.++..+ .++|-.+..-|+..|...
T Consensus 503 leE~A~~eLVp~l~~I-----L~~l~~af~kYQ~KNLlILYDAIgtlAds 547 (885)
T KOG2023|consen 503 LEEEAGEELVPYLEYI-----LDQLVFAFGKYQKKNLLILYDAIGTLADS 547 (885)
T ss_pred HHHhccchhHHHHHHH-----HHHHHHHHHHHhhcceehHHHHHHHHHHH
Confidence 98 2 22222333333 22233332 356666666666666544
No 38
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=99.25 E-value=1.7e-09 Score=130.13 Aligned_cols=397 Identities=16% Similarity=0.181 Sum_probs=284.3
Q ss_pred chHHHHHHHhcCCChHHHHHHHHHHHhhcCCcccHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHHcCChhhHHHHh
Q 001833 461 GCILLLVTMASSDDNQASRDAQELLENLSFSDDNVVQMAKANYFKHLLQRLSAGPESVKMRMATTLAEMELTDHHKASLL 540 (1008)
Q Consensus 461 g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~~~n~~~i~~~g~v~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~~~~k~~i~ 540 (1008)
.+.+..+.++.+.+...+.-+-.++..+...++....+ ++..+.+-|.++++.++..|+.+|+++...+-.
T Consensus 42 ~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~~~~~l----~~n~l~kdl~~~n~~~~~lAL~~l~~i~~~~~~----- 112 (526)
T PF01602_consen 42 FLFMEVIKLISSKDLELKRLGYLYLSLYLHEDPELLIL----IINSLQKDLNSPNPYIRGLALRTLSNIRTPEMA----- 112 (526)
T ss_dssp STHHHHHCTCSSSSHHHHHHHHHHHHHHTTTSHHHHHH----HHHHHHHHHCSSSHHHHHHHHHHHHHH-SHHHH-----
T ss_pred hHHHHHHHHhCCCCHHHHHHHHHHHHHHhhcchhHHHH----HHHHHHHhhcCCCHHHHHHHHhhhhhhcccchh-----
Confidence 45667788888889998888888888887666553333 456677778899999999999999998732222
Q ss_pred hcCcHHHHHHHhccCCHHHHHHHHHHHHHhhC-CCchhHHHHhcCChHHHHHHhcccCCCCcchHHHHHHHHHHHhcccc
Q 001833 541 EGNVLGPLLHLVSRGDIQMKKVAVKALRNLSS-VPQNGLQMIKEGAVGPLVDLLLHHSSSSSSLREETATAIMHLAVSTM 619 (1008)
Q Consensus 541 ~~g~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~-~~~~~~~i~~~G~v~~Ll~ll~~~~~~~~~~~~~a~~~L~nLa~~~~ 619 (1008)
.-.++.+.+++.+++|.+|+.|+.++.++.. +|+. +-.. .++.+..++.+.+ +.++..|+.++..+ ..++
T Consensus 113 -~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~---~~~~-~~~~l~~lL~d~~---~~V~~~a~~~l~~i-~~~~ 183 (526)
T PF01602_consen 113 -EPLIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDL---VEDE-LIPKLKQLLSDKD---PSVVSAALSLLSEI-KCND 183 (526)
T ss_dssp -HHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCC---HHGG-HHHHHHHHTTHSS---HHHHHHHHHHHHHH-HCTH
T ss_pred -hHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHH---HHHH-HHHHHhhhccCCc---chhHHHHHHHHHHH-ccCc
Confidence 2356888999999999999999999999985 3332 1222 5888999996554 77899999999999 1111
Q ss_pred ccccCCcccccccchhHHHHHHHhhccCChHHHHHHHHHHHHhccCCChhhHHHHhhhcCChHHHHHhhccCChhHHHHH
Q 001833 620 YQESSQTPVTLLESDKEIFMLFSLINLTGPNVQQRILQTFNALCRSPSAGNIKTTLTQCSAIPVLVQLCEHDNENVRANA 699 (1008)
Q Consensus 620 ~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~aL~~L~~~~~~~~~~~~i~e~~~i~~Lv~ll~~~~~~v~~~a 699 (1008)
... .-.-...+..+..++...+|-.+..+++.|..++..... . ... ...++.+..++++.++.+...+
T Consensus 184 ~~~-------~~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~-~-~~~---~~~i~~l~~~l~s~~~~V~~e~ 251 (526)
T PF01602_consen 184 DSY-------KSLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPE-D-ADK---NRIIEPLLNLLQSSSPSVVYEA 251 (526)
T ss_dssp HHH-------TTHHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHH-H-HHH---HHHHHHHHHHHHHHHHHHHHHH
T ss_pred chh-------hhhHHHHHHHhhhcccccchHHHHHHHHHHHhcccCChh-h-hhH---HHHHHHHHHHhhccccHHHHHH
Confidence 100 001134455666666788999999999999999875221 1 110 3468889999999999999999
Q ss_pred HHHHHHhccCCChhHHHhhhcccchHHHHHHhcCCCCHHHHHHHHHHHhcCCC-ChhhHHHHHhcCCHHHHHHHhh-CCC
Q 001833 700 VKLFCCLVDDGDEAIIREHVGQKCLETLVTIIQSSHNEEEIASAMGILSKLPE-VPQFTQWLLDAGALPIVLNFLK-NGR 777 (1008)
Q Consensus 700 ~~~L~~Ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~v~~~a~~~L~nL~~-~~~~~~~l~~~g~l~~Lv~lL~-~~~ 777 (1008)
+.++..+. . ... .-..+++.|+.++.+ ++.+++..++..|..++. ++.. +. .....+..+. +
T Consensus 252 ~~~i~~l~-~-~~~-----~~~~~~~~L~~lL~s-~~~nvr~~~L~~L~~l~~~~~~~----v~--~~~~~~~~l~~~-- 315 (526)
T PF01602_consen 252 IRLIIKLS-P-SPE-----LLQKAINPLIKLLSS-SDPNVRYIALDSLSQLAQSNPPA----VF--NQSLILFFLLYD-- 315 (526)
T ss_dssp HHHHHHHS-S-SHH-----HHHHHHHHHHHHHTS-SSHHHHHHHHHHHHHHCCHCHHH----HG--THHHHHHHHHCS--
T ss_pred HHHHHHhh-c-chH-----HHHhhHHHHHHHhhc-ccchhehhHHHHHHHhhcccchh----hh--hhhhhhheecCC--
Confidence 99999986 2 222 233678899999995 677899999999999988 5222 22 2333444555 4
Q ss_pred CCCCchhhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHHHhhc-CChHHHHHHHHHHhhhhhcCCCCCCCCCCCCc
Q 001833 778 QNDPNRFQVVENAVGALRRFTAPTNLEWQKRAAEAGVIPKLVQLLEY-GTTLTKEHAATSLARFSKNSLGLSRPIPKRKG 856 (1008)
Q Consensus 778 ~~~~~~~~v~~~a~~aL~~L~~~~~~~~~~~l~~~g~l~~Lv~lL~~-~~~~v~~~Aa~aL~nLs~~~~~l~~~~~~~~g 856 (1008)
.+..++..++..|.+++. +..... +++.|...+.. ++++++..++.+++.++...+.
T Consensus 316 ----~d~~Ir~~~l~lL~~l~~---~~n~~~-----Il~eL~~~l~~~~d~~~~~~~i~~I~~la~~~~~---------- 373 (526)
T PF01602_consen 316 ----DDPSIRKKALDLLYKLAN---ESNVKE-----ILDELLKYLSELSDPDFRRELIKAIGDLAEKFPP---------- 373 (526)
T ss_dssp ----SSHHHHHHHHHHHHHH-----HHHHHH-----HHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHGS----------
T ss_pred ----CChhHHHHHHHHHhhccc---ccchhh-----HHHHHHHHHHhccchhhhhhHHHHHHHHHhccCc----------
Confidence 578899999999999996 444333 46778888854 4888999999999999853311
Q ss_pred ccccCCCCCCcccccCcccCcccchhHhhccchHHHHHhhcCCChhhhHHHHHHHHhhh-cccccchhhHHHHhcCchHH
Q 001833 857 FWCFSPPPEIGCQVHGGLCGIESSFCLLEANAVRPLVRVLEDPDHGACEASLDALVTLI-EGERLQNGSKVLEDANAIDR 935 (1008)
Q Consensus 857 ~~~~~~~~~~~c~vh~~~c~~~~~~~l~~~g~i~~Lv~lL~~~d~~v~~~al~aL~~L~-~~~~~~~~~~~i~~~~~i~~ 935 (1008)
.....+..+++++...+..+...+...+.+++ ... .... ..+..
T Consensus 374 ---------------------------~~~~~v~~l~~ll~~~~~~~~~~~~~~i~~ll~~~~---~~~~-----~~l~~ 418 (526)
T PF01602_consen 374 ---------------------------DAEWYVDTLLKLLEISGDYVSNEIINVIRDLLSNNP---ELRE-----KILKK 418 (526)
T ss_dssp ---------------------------SHHHHHHHHHHHHHCTGGGCHCHHHHHHHHHHHHST---TTHH-----HHHHH
T ss_pred ---------------------------hHHHHHHHHHHhhhhccccccchHHHHHHHHhhcCh---hhhH-----HHHHH
Confidence 11235788999999888888888889999998 321 2222 23777
Q ss_pred HHHHhcC-CChHHHHHHHHHHHHHhc
Q 001833 936 MVRFLSS-PSPKLQEKALDSVERIFR 960 (1008)
Q Consensus 936 l~~ll~~-~~~~l~~~a~~~L~~l~~ 960 (1008)
+++.+.+ .+++++..++|++..+..
T Consensus 419 L~~~l~~~~~~~~~~~~~wilGEy~~ 444 (526)
T PF01602_consen 419 LIELLEDISSPEALAAAIWILGEYGE 444 (526)
T ss_dssp HHHHHTSSSSHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHhhHHHHHHHHHhhhcccCC
Confidence 8888854 788899999999988743
No 39
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.23 E-value=3.6e-09 Score=121.14 Aligned_cols=380 Identities=15% Similarity=0.187 Sum_probs=264.5
Q ss_pred CHHHHHHHHHHHHHH-c-CChhhHHHHhhcCcHHHHHHHhccC-CHHHHHHHHHHHHHhhC-CCchhHHHHhcCChHHHH
Q 001833 515 PESVKMRMATTLAEM-E-LTDHHKASLLEGNVLGPLLHLVSRG-DIQMKKVAVKALRNLSS-VPQNGLQMIKEGAVGPLV 590 (1008)
Q Consensus 515 ~~~~~~~aa~~L~~L-s-~~~~~k~~i~~~g~i~~Lv~lL~~~-~~~~~~~A~~aL~~L~~-~~~~~~~i~~~G~v~~Ll 590 (1008)
++..+.+++.-|+.+ + .+++.-..+--.-.+|.|+.+|+.. ++.+...|+.||.+||. .|+....+++.++||.|+
T Consensus 181 Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a~vV~~~aIPvl~ 260 (1051)
T KOG0168|consen 181 DESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSAIVVDEHAIPVLL 260 (1051)
T ss_pred ChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhheeecccchHHHH
Confidence 344444555555543 2 2333322232345789999999876 78999999999999995 899999999999999999
Q ss_pred HHhcccCCCCcchHHHHHHHHHHHhccccccccCCcccccccchhHHHHHHHhhccCChHHHHHHHHHHHHhccCCChhh
Q 001833 591 DLLLHHSSSSSSLREETATAIMHLAVSTMYQESSQTPVTLLESDKEIFMLFSLINLTGPNVQQRILQTFNALCRSPSAGN 670 (1008)
Q Consensus 591 ~ll~~~~~~~~~~~~~a~~~L~nLa~~~~~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~aL~~L~~~~~~~~ 670 (1008)
+-|..-. ..++.++++.+|..|+..+.. .+-..|++...+..++..+-.+|+.|+.+-.|+|..-.+++
T Consensus 261 ~kL~~Ie--yiDvAEQ~LqALE~iSR~H~~---------AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi~sd~ 329 (1051)
T KOG0168|consen 261 EKLLTIE--YIDVAEQSLQALEKISRRHPK---------AILQAGALSAVLSYLDFFSIHAQRVALAIAANCCKSIRSDE 329 (1051)
T ss_pred Hhhhhhh--hhHHHHHHHHHHHHHHhhccH---------HHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcc
Confidence 8887432 367999999999999875431 23356889999999998899999999999999998644443
Q ss_pred HHHHhhhcCChHHHHHhhccCChhHHHHHHHHHHHhcc--CCChhHHHhhhcccchHHHHHHhcCCC---CHHHHHHHHH
Q 001833 671 IKTTLTQCSAIPVLVQLCEHDNENVRANAVKLFCCLVD--DGDEAIIREHVGQKCLETLVTIIQSSH---NEEEIASAMG 745 (1008)
Q Consensus 671 ~~~~i~e~~~i~~Lv~ll~~~~~~v~~~a~~~L~~Ls~--~~~~~~~~~~~~~~~i~~Lv~lL~~~~---~~~v~~~a~~ 745 (1008)
. ..+.+ ++|.|..+|++.+....+.++.++..++. .+.++..+++...+.+....+||.-.. .........+
T Consensus 330 f-~~v~e--alPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s~dLi~~~~qLlsvt~t~Ls~~~~~~vIr 406 (1051)
T KOG0168|consen 330 F-HFVME--ALPLLTPLLSYQDKKPIESVCICLTRIADGFQHGPDKLDQLCSHDLITNIQQLLSVTPTILSNGTYTGVIR 406 (1051)
T ss_pred c-hHHHH--HHHHHHHHHhhccchhHHHHHHHHHHHHHhcccChHHHHHHhchhHHHHHHHHHhcCcccccccchhHHHH
Confidence 3 23333 69999999999999999999999999872 355778888888999999999987652 1235566778
Q ss_pred HHhcCCC-ChhhHHHHHhcCCHHHHHHHhhCCCCCCC---------chhhHHHHHHHHHH--------------------
Q 001833 746 ILSKLPE-VPQFTQWLLDAGALPIVLNFLKNGRQNDP---------NRFQVVENAVGALR-------------------- 795 (1008)
Q Consensus 746 ~L~nL~~-~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~---------~~~~v~~~a~~aL~-------------------- 795 (1008)
.|..++. .+-....+.+.++...+..+|.......+ ...++.+-....+.
T Consensus 407 mls~msS~~pl~~~tl~k~~I~~~L~~il~g~s~s~nas~~~~l~r~Pnel~e~~sl~~eLlp~~p~e~i~~~~~~~~~~ 486 (1051)
T KOG0168|consen 407 MLSLMSSGSPLLFRTLLKLDIADTLKRILQGYSKSANASLHELLSRSPNELYELTSLIIELLPCLPVEGIFAVDCSLIYE 486 (1051)
T ss_pred HHHHHccCChHHHHHHHHhhHHHHHHHHHhccCcCcccccccccccCcHHHHHHHHHHheeecCCcccceeehhhhhhcc
Confidence 8888888 68888889999988888888876222110 01111111111110
Q ss_pred ---------------------------HhcC-----------------C--------CCHHHHHHHHHcCChHHHHHHhh
Q 001833 796 ---------------------------RFTA-----------------P--------TNLEWQKRAAEAGVIPKLVQLLE 823 (1008)
Q Consensus 796 ---------------------------~L~~-----------------~--------~~~~~~~~l~~~g~l~~Lv~lL~ 823 (1008)
++.. + ..|+..+.+. ..++|+|++...
T Consensus 487 ~~n~~~~~~~~~~d~~~s~~~~~~~~~ri~~q~~~~~~t~~~~~dkl~~~~r~~~l~nqpel~q~F~-~~llpVLveVYs 565 (1051)
T KOG0168|consen 487 IVNLADELLWQWRDDRGSWHTYTNIDSRIIEQINEDTGTSRKQQDKLNGSAREGLLKNQPELLQSFG-KDLLPVLVEVYS 565 (1051)
T ss_pred cccccccccccCccccccccccchhhhhhhhhhccCcccchhhhhhcCCchhhhhhhcCHHHHHHHH-HHHHHHHHHHHh
Confidence 0000 0 0112222222 247899999998
Q ss_pred cC-ChHHHHHHHHHHhhhhhcCCCCCCCCCCCCcccccCCCCCCcccccCcccCcccchhHhhccchH-HHHHhhcCCCh
Q 001833 824 YG-TTLTKEHAATSLARFSKNSLGLSRPIPKRKGFWCFSPPPEIGCQVHGGLCGIESSFCLLEANAVR-PLVRVLEDPDH 901 (1008)
Q Consensus 824 ~~-~~~v~~~Aa~aL~nLs~~~~~l~~~~~~~~g~~~~~~~~~~~c~vh~~~c~~~~~~~l~~~g~i~-~Lv~lL~~~d~ 901 (1008)
++ ++.||..+..+|..+..-+ +++-...++....+. -+-.+|..+|.
T Consensus 566 SsA~~~VR~kcL~Ailrlvy~s-------------------------------~seli~slLk~~~vSS~lAG~lsskD~ 614 (1051)
T KOG0168|consen 566 SSANPDVRYKCLSAILRLVYFS-------------------------------NSELIGSLLKNTNVSSHLAGMLSSKDL 614 (1051)
T ss_pred ccCCchhhHHHHHHHHHHHhhC-------------------------------CHHHHHHHHhcchHHHHHHhhhhcCCC
Confidence 65 8899999999999998433 233333444443333 34457788888
Q ss_pred hhhHHHHHHHHhhhcccccchhhHHHHhcCchHHHHHHhc
Q 001833 902 GACEASLDALVTLIEGERLQNGSKVLEDANAIDRMVRFLS 941 (1008)
Q Consensus 902 ~v~~~al~aL~~L~~~~~~~~~~~~i~~~~~i~~l~~ll~ 941 (1008)
.+...|+....-|.. .-.+.+...|..+|.+..+-+|..
T Consensus 615 ~vlVgALQvAEiLme-Klpd~F~~~F~REGV~~~v~~L~~ 653 (1051)
T KOG0168|consen 615 TVLVGALQVAEILME-KLPDTFSPSFRREGVFHAVKQLSV 653 (1051)
T ss_pred eeEeehHHHHHHHHH-HhHHHhhhhHhhhhHHHHHHHHhc
Confidence 888888876666651 112356788889999998888875
No 40
>PTZ00429 beta-adaptin; Provisional
Probab=99.19 E-value=1.6e-06 Score=104.77 Aligned_cols=506 Identities=12% Similarity=0.075 Sum_probs=309.4
Q ss_pred cCchHHHHHHHcCCCHHHHHHHHH-HHHHhccCChhhHHHhhccCCcHHHHHHHhcc-ChhHHHHHHHHHHHhcc-Cchh
Q 001833 376 ENYIPKLIYLLGSKNRDVRNRALI-ILHILVKDSNDTKERLANGDDAVESIVRSLGR-RIEERKLAVALLLELST-CNTL 452 (1008)
Q Consensus 376 ~g~i~~L~~lL~s~~~~~~~~Al~-~L~~Ls~~~~~~k~~i~~~~g~i~~Lv~~L~~-~~~~~~~A~~~L~~Ls~-~~~~ 452 (1008)
.|=+..|-..|.+.+...+..|++ ++..++.+. +. ......+++++.. +.+.++..--.|.+.+. +++.
T Consensus 31 kge~~ELr~~L~s~~~~~kk~alKkvIa~mt~G~-Dv-------S~LF~dVvk~~~S~d~elKKLvYLYL~~ya~~~pel 102 (746)
T PTZ00429 31 RGEGAELQNDLNGTDSYRKKAAVKRIIANMTMGR-DV-------SYLFVDVVKLAPSTDLELKKLVYLYVLSTARLQPEK 102 (746)
T ss_pred cchHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCC-Cc-------hHHHHHHHHHhCCCCHHHHHHHHHHHHHHcccChHH
Confidence 355667778888888877888885 555666664 22 2345556777755 55666766666666665 3332
Q ss_pred hHHhhcccchHHHHHHHhcCCChHHHHHHHHHHHhhcCCcccHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHHcCC
Q 001833 453 RDQIGDVQGCILLLVTMASSDDNQASRDAQELLENLSFSDDNVVQMAKANYFKHLLQRLSAGPESVKMRMATTLAEMELT 532 (1008)
Q Consensus 453 ~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~~~n~~~i~~~g~v~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~ 532 (1008)
.. -++..+.+=+.+++|.++..|+++|.++-... + -.-.++++.+.+.+.++-+|..|+.++..+-..
T Consensus 103 al------LaINtl~KDl~d~Np~IRaLALRtLs~Ir~~~-----i-~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~ 170 (746)
T PTZ00429 103 AL------LAVNTFLQDTTNSSPVVRALAVRTMMCIRVSS-----V-LEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHD 170 (746)
T ss_pred HH------HHHHHHHHHcCCCCHHHHHHHHHHHHcCCcHH-----H-HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhh
Confidence 21 23456666677889999999999888763311 1 112345566778888999999999999998543
Q ss_pred hhhHHHHhhcCcHHHHHHHhccCCHHHHHHHHHHHHHhhCCCchhHHHHhcCChHHHHHHhcccCCCCcchHHHHHHHHH
Q 001833 533 DHHKASLLEGNVLGPLLHLVSRGDIQMKKVAVKALRNLSSVPQNGLQMIKEGAVGPLVDLLLHHSSSSSSLREETATAIM 612 (1008)
Q Consensus 533 ~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~~~~~~~i~~~G~v~~Ll~ll~~~~~~~~~~~~~a~~~L~ 612 (1008)
+.. .+...|.++.|.++|.+.++.+..+|+.+|..++......-. ...+.+..|+..+...+ ...+-..+.+|.
T Consensus 171 ~pe--lv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~l~-l~~~~~~~Ll~~L~e~~---EW~Qi~IL~lL~ 244 (746)
T PTZ00429 171 DMQ--LFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEKIE-SSNEWVNRLVYHLPECN---EWGQLYILELLA 244 (746)
T ss_pred Ccc--cccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchhhH-HHHHHHHHHHHHhhcCC---hHHHHHHHHHHH
Confidence 332 234567889999999999999999999999999853322211 23344566666665544 345666666664
Q ss_pred HHhccccccccCCcccccccchhHHHHHHHhhccCChHHHHHHHHHHHHhccCCChhhHHHHhhhcCChHHHHHhhccCC
Q 001833 613 HLAVSTMYQESSQTPVTLLESDKEIFMLFSLINLTGPNVQQRILQTFNALCRSPSAGNIKTTLTQCSAIPVLVQLCEHDN 692 (1008)
Q Consensus 613 nLa~~~~~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~aL~~L~~~~~~~~~~~~i~e~~~i~~Lv~ll~~~~ 692 (1008)
... +.. . -.....+..+...+++.++.+.-.+++++..+..... ......+.. ...+.|+.| .+.+
T Consensus 245 ~y~--P~~-~--------~e~~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~~~-~~~~~~~~~-rl~~pLv~L-~ss~ 310 (746)
T PTZ00429 245 AQR--PSD-K--------ESAETLLTRVLPRMSHQNPAVVMGAIKVVANLASRCS-QELIERCTV-RVNTALLTL-SRRD 310 (746)
T ss_pred hcC--CCC-c--------HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCcCC-HHHHHHHHH-HHHHHHHHh-hCCC
Confidence 321 111 1 1124577788888889999999999999999976422 222222111 123566666 4567
Q ss_pred hhHHHHHHHHHHHhccCCChhHHHhhhcccchHHHHHHhcCCCCHHHHHHHHHHHhcCCCChhhHHHHHhcCCHHHHHHH
Q 001833 693 ENVRANAVKLFCCLVDDGDEAIIREHVGQKCLETLVTIIQSSHNEEEIASAMGILSKLPEVPQFTQWLLDAGALPIVLNF 772 (1008)
Q Consensus 693 ~~v~~~a~~~L~~Ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~v~~~a~~~L~nL~~~~~~~~~l~~~g~l~~Lv~l 772 (1008)
++++..++..+..+... .+.. +.. -+..+.- ...+...++...+.+|..|+....... ++.-|..+
T Consensus 311 ~eiqyvaLr~I~~i~~~-~P~l----f~~-~~~~Ff~--~~~Dp~yIK~~KLeIL~~Lane~Nv~~------IL~EL~eY 376 (746)
T PTZ00429 311 AETQYIVCKNIHALLVI-FPNL----LRT-NLDSFYV--RYSDPPFVKLEKLRLLLKLVTPSVAPE------ILKELAEY 376 (746)
T ss_pred ccHHHHHHHHHHHHHHH-CHHH----HHH-HHHhhhc--ccCCcHHHHHHHHHHHHHHcCcccHHH------HHHHHHHH
Confidence 89999999888777622 2211 111 1122111 122344688899999999986333322 23556666
Q ss_pred hhCCCCCCCchhhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHHHhhcCChHHHHHHHHHHhhhhhcCCCCCCCCC
Q 001833 773 LKNGRQNDPNRFQVVENAVGALRRFTAPTNLEWQKRAAEAGVIPKLVQLLEYGTTLTKEHAATSLARFSKNSLGLSRPIP 852 (1008)
Q Consensus 773 L~~~~~~~~~~~~v~~~a~~aL~~L~~~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~v~~~Aa~aL~nLs~~~~~l~~~~~ 852 (1008)
..+ .+.+++..++.++++++.. -+... ...+..|++++..+.. +...+..++.++.+..+.
T Consensus 377 a~d------~D~ef~r~aIrAIg~lA~k-~~~~a-----~~cV~~Ll~ll~~~~~-~v~e~i~vik~IlrkyP~------ 437 (746)
T PTZ00429 377 ASG------VDMVFVVEVVRAIASLAIK-VDSVA-----PDCANLLLQIVDRRPE-LLPQVVTAAKDIVRKYPE------ 437 (746)
T ss_pred hhc------CCHHHHHHHHHHHHHHHHh-ChHHH-----HHHHHHHHHHhcCCch-hHHHHHHHHHHHHHHCcc------
Confidence 665 5778999999999999974 23322 3456778888876543 455688888888753321
Q ss_pred CCCcccccCCCCCCcccccCcccCcccchhHhhccchHHHHHhh---cCCChhhhHHHHHHHHhhhcccccchhhHHHHh
Q 001833 853 KRKGFWCFSPPPEIGCQVHGGLCGIESSFCLLEANAVRPLVRVL---EDPDHGACEASLDALVTLIEGERLQNGSKVLED 929 (1008)
Q Consensus 853 ~~~g~~~~~~~~~~~c~vh~~~c~~~~~~~l~~~g~i~~Lv~lL---~~~d~~v~~~al~aL~~L~~~~~~~~~~~~i~~ 929 (1008)
. ..+..|+..+ .-.+++.+.+.+|.|+.+.+ ......
T Consensus 438 --------------------------~-------~il~~L~~~~~~~~i~e~~AKaaiiWILGEy~~--~I~~a~----- 477 (746)
T PTZ00429 438 --------------------------L-------LMLDTLVTDYGADEVVEEEAKVSLLWMLGEYCD--FIENGK----- 477 (746)
T ss_pred --------------------------H-------HHHHHHHHhhcccccccHHHHHHHHHHHHhhHh--hHhhHH-----
Confidence 0 1345555433 23566788777888888761 111111
Q ss_pred cCchHHHHHHhcCCChHHHHHHHHHHHHHhcCh--HHHHHhccccCchhhhhc-ccCCchhhHHHHHHHHHHh
Q 001833 930 ANAIDRMVRFLSSPSPKLQEKALDSVERIFRLP--EFKQKYGKSAQMPLVDLT-QRGNSSMKSLSARVLAHLN 999 (1008)
Q Consensus 930 ~~~i~~l~~ll~~~~~~l~~~a~~~L~~l~~~~--~~~~~~~~~~~~~Lv~l~-~~~~~~~~~~Aa~~L~~L~ 999 (1008)
..++.+++-+...++.+|-..+.+..++|-.. +....+ ...|-.++ .+.|+++|.+|.--.+-|.
T Consensus 478 -~~L~~~i~~f~~E~~~VqlqlLta~vKlfl~~p~~~~~~l----~~vL~~~t~~~~d~DVRDRA~~Y~rLLs 545 (746)
T PTZ00429 478 -DIIQRFIDTIMEHEQRVQLAILSAAVKMFLRDPQGMEPQL----NRVLETVTTHSDDPDVRDRAFAYWRLLS 545 (746)
T ss_pred -HHHHHHHhhhccCCHHHHHHHHHHHHHHHhcCcHHHHHHH----HHHHHHHHhcCCChhHHHHHHHHHHHHc
Confidence 11222222223466778888777777765432 221111 11222232 3467788888865554443
No 41
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.17 E-value=2e-08 Score=112.29 Aligned_cols=519 Identities=18% Similarity=0.216 Sum_probs=300.8
Q ss_pred hhhhhhhhccCcchHHHHHHHHHHHHHHhhchhhhh--hHhh--cCchHHHHHHHcCCCHHHHHHHHHHHHHhccCChhh
Q 001833 336 TIASMKPKLVSTEVEEVLHCLEQLQDLCQQRDQHRE--WVIL--ENYIPKLIYLLGSKNRDVRNRALIILHILVKDSNDT 411 (1008)
Q Consensus 336 ~~~~~~~~l~~~~~~~~~~al~~L~~l~~~~~~~r~--~i~~--~g~i~~L~~lL~s~~~~~~~~Al~~L~~Ls~~~~~~ 411 (1008)
..+.+...|.+.+...+..|...|+..|+++..--. +... .-.+|.++.+.++.++.+|..|+.++...-... +
T Consensus 129 lLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~--~ 206 (885)
T KOG2023|consen 129 LLPQLCELLDSPDYNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQ--T 206 (885)
T ss_pred HHHHHHHHhcCCcccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeecC--c
Confidence 456666777777777888899999999988765311 1100 125899999999999999999999886544332 1
Q ss_pred HHHhhccCCcHHHHHHHhccChhHHHHHHHHHHHhccCchhhHHhhcccchHHHHHHHhcCCChHHHHHHHHHHHhhcCC
Q 001833 412 KERLANGDDAVESIVRSLGRRIEERKLAVALLLELSTCNTLRDQIGDVQGCILLLVTMASSDDNQASRDAQELLENLSFS 491 (1008)
Q Consensus 412 k~~i~~~~g~i~~Lv~~L~~~~~~~~~A~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~ 491 (1008)
...+.. ....++.|..+...+++.++++.+.+|..|-..
T Consensus 207 qal~~~-----------------------------------------iD~Fle~lFalanD~~~eVRk~vC~alv~Llev 245 (885)
T KOG2023|consen 207 QALYVH-----------------------------------------IDKFLEILFALANDEDPEVRKNVCRALVFLLEV 245 (885)
T ss_pred HHHHHH-----------------------------------------HHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHh
Confidence 111111 123445555566667888888888888777543
Q ss_pred cccHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHHcCChhhHHHHhh--cCcHHHHHHHh----------ccC-C--
Q 001833 492 DDNVVQMAKANYFKHLLQRLSAGPESVKMRMATTLAEMELTDHHKASLLE--GNVLGPLLHLV----------SRG-D-- 556 (1008)
Q Consensus 492 ~~n~~~i~~~g~v~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~~~~k~~i~~--~g~i~~Lv~lL----------~~~-~-- 556 (1008)
...+..-.-.++|+.++..-.+.++++.-+|+.....++..+-.+..+.. ...||.|+.-+ .+. +
T Consensus 246 r~dkl~phl~~IveyML~~tqd~dE~VALEACEFwla~aeqpi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~ 325 (885)
T KOG2023|consen 246 RPDKLVPHLDNIVEYMLQRTQDVDENVALEACEFWLALAEQPICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDE 325 (885)
T ss_pred cHHhcccchHHHHHHHHHHccCcchhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccc
Confidence 33333333356677777777777888888888888888877766655543 35677776532 200 0
Q ss_pred -------------------------------------------HHHHHHHHHHHHHhhCCCchhHHHHhcCChHHHHHHh
Q 001833 557 -------------------------------------------IQMKKVAVKALRNLSSVPQNGLQMIKEGAVGPLVDLL 593 (1008)
Q Consensus 557 -------------------------------------------~~~~~~A~~aL~~L~~~~~~~~~i~~~G~v~~Ll~ll 593 (1008)
-..|+.++.+|-.|+. +.....++.++.++
T Consensus 326 ~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVLan-------vf~~elL~~l~PlL 398 (885)
T KOG2023|consen 326 SVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDAFSDWNLRKCSAAALDVLAN-------VFGDELLPILLPLL 398 (885)
T ss_pred cCCchhhhccchhhhchhccCccccccccccccccccccccccccHhhccHHHHHHHHH-------hhHHHHHHHHHHHH
Confidence 1345555666655553 23334566666666
Q ss_pred cccCCC-CcchHHHHHHHHHHHhccccccccCCcccccccchhHHHHHHHhhccCChHHHHHHHHHHHHhccCCChhhHH
Q 001833 594 LHHSSS-SSSLREETATAIMHLAVSTMYQESSQTPVTLLESDKEIFMLFSLINLTGPNVQQRILQTFNALCRSPSAGNIK 672 (1008)
Q Consensus 594 ~~~~~~-~~~~~~~a~~~L~nLa~~~~~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~aL~~L~~~~~~~~~~ 672 (1008)
+..-.. .=.+++.+.-+|+.++++...-- +.-+ ...++.++.+|+...|-+|.-.+|+|+..+..-....
T Consensus 399 k~~L~~~~W~vrEagvLAlGAIAEGcM~g~-----~p~L--peLip~l~~~L~DKkplVRsITCWTLsRys~wv~~~~-- 469 (885)
T KOG2023|consen 399 KEHLSSEEWKVREAGVLALGAIAEGCMQGF-----VPHL--PELIPFLLSLLDDKKPLVRSITCWTLSRYSKWVVQDS-- 469 (885)
T ss_pred HHHcCcchhhhhhhhHHHHHHHHHHHhhhc-----ccch--HHHHHHHHHHhccCccceeeeeeeeHhhhhhhHhcCC--
Confidence 542211 12478888899999988553211 1122 3578889999999999999999999998876422221
Q ss_pred HHhhhcCChHHHH---HhhccCChhHHHHHHHHHHHhccCCChhHHHhhhcccchHHHHHHhcCC--CCHHHHHHHHHHH
Q 001833 673 TTLTQCSAIPVLV---QLCEHDNENVRANAVKLFCCLVDDGDEAIIREHVGQKCLETLVTIIQSS--HNEEEIASAMGIL 747 (1008)
Q Consensus 673 ~~i~e~~~i~~Lv---~ll~~~~~~v~~~a~~~L~~Ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~--~~~~v~~~a~~~L 747 (1008)
+..-+.|.|- ..+-+++..++++||.+++.+-+...++.+. +.+ ..+..|+..++.. .+--+...|.++|
T Consensus 470 ---~~~~f~pvL~~ll~~llD~NK~VQEAAcsAfAtleE~A~~eLVp-~l~-~IL~~l~~af~kYQ~KNLlILYDAIgtl 544 (885)
T KOG2023|consen 470 ---RDEYFKPVLEGLLRRLLDSNKKVQEAACSAFATLEEEAGEELVP-YLE-YILDQLVFAFGKYQKKNLLILYDAIGTL 544 (885)
T ss_pred ---hHhhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhccchhHH-HHH-HHHHHHHHHHHHHhhcceehHHHHHHHH
Confidence 1122344444 4445678999999999999996433332222 111 2334444444332 2333455666666
Q ss_pred hcCCC----ChhhHHHHH-----------h-cC-------CHHHHHHHhhCCCCCCCchhhHHHHHHHHHH---------
Q 001833 748 SKLPE----VPQFTQWLL-----------D-AG-------ALPIVLNFLKNGRQNDPNRFQVVENAVGALR--------- 795 (1008)
Q Consensus 748 ~nL~~----~~~~~~~l~-----------~-~g-------~l~~Lv~lL~~~~~~~~~~~~v~~~a~~aL~--------- 795 (1008)
+.=+. .+...+.++ + .. .+..+...|..+-. +..+++-..++..|.
T Consensus 545 Adsvg~~Ln~~~YiqiLmPPLi~KW~~lsd~DKdLfPLLEClSsia~AL~~gF~--P~~~~Vy~Rc~~il~~t~q~~~~~ 622 (885)
T KOG2023|consen 545 ADSVGHALNKPAYIQILMPPLIEKWELLSDSDKDLFPLLECLSSIASALGVGFL--PYAQPVYQRCFRILQKTLQLLAKV 622 (885)
T ss_pred HHHHHHhcCcHHHHHHhccHHHHHHHhcCcccchHHHHHHHHHHHHHHHhcccc--ccCHHHHHHHHHHHHHHHHHHHhc
Confidence 65442 222222111 0 00 11111112222111 122333333333333
Q ss_pred ----------------------HhcCCCCHHHHHHHHHcCChHHHHHHhhcCChHHHHHHHHHHhhhhhcCCCCCCCCCC
Q 001833 796 ----------------------RFTAPTNLEWQKRAAEAGVIPKLVQLLEYGTTLTKEHAATSLARFSKNSLGLSRPIPK 853 (1008)
Q Consensus 796 ----------------------~L~~~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~v~~~Aa~aL~nLs~~~~~l~~~~~~ 853 (1008)
-|+.+........+...++...+...+.+..++||..|-..|+.++..
T Consensus 623 ~~~~~~~~pdkdfiI~sLDL~SGLaegLg~~ie~Lva~snl~~lll~C~~D~~peVRQS~FALLGDltk~---------- 692 (885)
T KOG2023|consen 623 QQDPTVEAPDKDFIIVSLDLLSGLAEGLGSHIEPLVAQSNLLDLLLQCLQDEVPEVRQSAFALLGDLTKA---------- 692 (885)
T ss_pred cCCccccCCCcceEEEeHHHHhHHHHHhhhchHHHhhhccHHHHHHHHhccCChHHHHHHHHHHHHHHHH----------
Confidence 222221222345566778888889999999999999999999999842
Q ss_pred CCcccccCCCCCCcccccCcccCcccchhHhhccchHHHHHhhcCCChhhhHHHHHHHHhhh--cccccchhhHHHHhcC
Q 001833 854 RKGFWCFSPPPEIGCQVHGGLCGIESSFCLLEANAVRPLVRVLEDPDHGACEASLDALVTLI--EGERLQNGSKVLEDAN 931 (1008)
Q Consensus 854 ~~g~~~~~~~~~~~c~vh~~~c~~~~~~~l~~~g~i~~Lv~lL~~~d~~v~~~al~aL~~L~--~~~~~~~~~~~i~~~~ 931 (1008)
|.-| -.-++ +..++.|-.-+......+..+|+||++.+. -+.+.......
T Consensus 693 --------------c~~~-------v~p~~--~~fl~~lg~Nl~~~~isv~nNA~WAiGeia~k~g~~~~~~v~~----- 744 (885)
T KOG2023|consen 693 --------------CFEH-------VIPNL--ADFLPILGANLNPENISVCNNAIWAIGEIALKMGLKMKQYVSP----- 744 (885)
T ss_pred --------------HHHh-------ccchH--HHHHHHHhhcCChhhchHHHHHHHHHHHHHHHhchhhhhHHHH-----
Confidence 1111 00000 123333334444445569999999999999 33332322222
Q ss_pred chHHHHHHhcCC--ChHHHHHHHHHHHHH
Q 001833 932 AIDRMVRFLSSP--SPKLQEKALDSVERI 958 (1008)
Q Consensus 932 ~i~~l~~ll~~~--~~~l~~~a~~~L~~l 958 (1008)
.+..|..+++.+ +..+.+.....+.++
T Consensus 745 vl~~L~~iin~~~~~~tllENtAITIGrL 773 (885)
T KOG2023|consen 745 VLEDLITIINRQNTPKTLLENTAITIGRL 773 (885)
T ss_pred HHHHHHHHhcccCchHHHHHhhhhhhhhh
Confidence 245566665443 456777877777776
No 42
>PTZ00429 beta-adaptin; Provisional
Probab=99.15 E-value=5.4e-07 Score=108.67 Aligned_cols=497 Identities=14% Similarity=0.145 Sum_probs=315.1
Q ss_pred hhhhhhccCcchHHHHHHHHHHHHHHhhchhhhhhHhhcCchHHHHHHHcCCCHHHHHHHHHHHHHhccCChhhHHHhhc
Q 001833 338 ASMKPKLVSTEVEEVLHCLEQLQDLCQQRDQHREWVILENYIPKLIYLLGSKNRDVRNRALIILHILVKDSNDTKERLAN 417 (1008)
Q Consensus 338 ~~~~~~l~~~~~~~~~~al~~L~~l~~~~~~~r~~i~~~g~i~~L~~lL~s~~~~~~~~Al~~L~~Ls~~~~~~k~~i~~ 417 (1008)
..++..|.+.+...+..+++.+......+... ..+.+-++.++.+.+.++++-..-.|.+++..+++.- +
T Consensus 35 ~ELr~~L~s~~~~~kk~alKkvIa~mt~G~Dv------S~LF~dVvk~~~S~d~elKKLvYLYL~~ya~~~pela--l-- 104 (746)
T PTZ00429 35 AELQNDLNGTDSYRKKAAVKRIIANMTMGRDV------SYLFVDVVKLAPSTDLELKKLVYLYVLSTARLQPEKA--L-- 104 (746)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCc------hHHHHHHHHHhCCCCHHHHHHHHHHHHHHcccChHHH--H--
Confidence 33556666777777888888877665444321 1246677888889999999988888888887664422 1
Q ss_pred cCCcHHHHHHHhcc-ChhHHHHHHHHHHHhccCchhhHHhhcccchHHHHHHHhcCCChHHHHHHHHHHHhhcCCcccHH
Q 001833 418 GDDAVESIVRSLGR-RIEERKLAVALLLELSTCNTLRDQIGDVQGCILLLVTMASSDDNQASRDAQELLENLSFSDDNVV 496 (1008)
Q Consensus 418 ~~g~i~~Lv~~L~~-~~~~~~~A~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~~~n~~ 496 (1008)
-++..+.+=+.+ +.-.|..|+.+|..+-. ++.- .-.++.+.+.+.+.+|-+++.|+.++.++-..+..
T Consensus 105 --LaINtl~KDl~d~Np~IRaLALRtLs~Ir~-~~i~------e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pe-- 173 (746)
T PTZ00429 105 --LAVNTFLQDTTNSSPVVRALAVRTMMCIRV-SSVL------EYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQ-- 173 (746)
T ss_pred --HHHHHHHHHcCCCCHHHHHHHHHHHHcCCc-HHHH------HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcc--
Confidence 234556666655 34567777777776533 1111 22345667777889999999999999998654332
Q ss_pred HHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHHcCChhhHHHHhhcCcHHHHHHHhccCCHHHHHHHHHHHHHhhCCCch
Q 001833 497 QMAKANYFKHLLQRLSAGPESVKMRMATTLAEMELTDHHKASLLEGNVLGPLLHLVSRGDIQMKKVAVKALRNLSSVPQN 576 (1008)
Q Consensus 497 ~i~~~g~v~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~~~~ 576 (1008)
.+.+.|.++.|.++|.+.++.+..+|+.+|..+...+..+. -...+.+..|+..+...++..+-..+.+|... .|..
T Consensus 174 lv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~l-~l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y--~P~~ 250 (746)
T PTZ00429 174 LFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEKI-ESSNEWVNRLVYHLPECNEWGQLYILELLAAQ--RPSD 250 (746)
T ss_pred cccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchhh-HHHHHHHHHHHHHhhcCChHHHHHHHHHHHhc--CCCC
Confidence 33467888999999999999999999999999965433222 12345567777888777888888877777543 2333
Q ss_pred hHHHHhcCChHHHHHHhcccCCCCcchHHHHHHHHHHHhccccccccCCcccccccc--hhHHHHHHHhhccCChHHHHH
Q 001833 577 GLQMIKEGAVGPLVDLLLHHSSSSSSLREETATAIMHLAVSTMYQESSQTPVTLLES--DKEIFMLFSLINLTGPNVQQR 654 (1008)
Q Consensus 577 ~~~i~~~G~v~~Ll~ll~~~~~~~~~~~~~a~~~L~nLa~~~~~~~~~~~~~~~l~~--~~~i~~L~~ll~~~~~~v~~~ 654 (1008)
.... ...+..+...+++.+ +.+.-.|+.++.++..... .. .+.. .....+++.+ .++++++|..
T Consensus 251 ~~e~--~~il~~l~~~Lq~~N---~AVVl~Aik~il~l~~~~~-~~-------~~~~~~~rl~~pLv~L-~ss~~eiqyv 316 (746)
T PTZ00429 251 KESA--ETLLTRVLPRMSHQN---PAVVMGAIKVVANLASRCS-QE-------LIERCTVRVNTALLTL-SRRDAETQYI 316 (746)
T ss_pred cHHH--HHHHHHHHHHhcCCC---HHHHHHHHHHHHHhcCcCC-HH-------HHHHHHHHHHHHHHHh-hCCCccHHHH
Confidence 2222 235666777777654 6789999999999875321 00 1100 1122445555 4678899999
Q ss_pred HHHHHHHhccCCChhhHHHHhhhcCChHHHHHhhccCChhHHHHHHHHHHHhccCCChhHHHhhhcccchHHHHHHhcCC
Q 001833 655 ILQTFNALCRSPSAGNIKTTLTQCSAIPVLVQLCEHDNENVRANAVKLFCCLVDDGDEAIIREHVGQKCLETLVTIIQSS 734 (1008)
Q Consensus 655 al~aL~~L~~~~~~~~~~~~i~e~~~i~~Lv~ll~~~~~~v~~~a~~~L~~Ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~ 734 (1008)
+++.+..+.... +. .+.. -+..+.-.. ++...++...+.+|..|+ . +.+... .+..|.+...+
T Consensus 317 aLr~I~~i~~~~--P~---lf~~--~~~~Ff~~~-~Dp~yIK~~KLeIL~~La-n--e~Nv~~-----IL~EL~eYa~d- 379 (746)
T PTZ00429 317 VCKNIHALLVIF--PN---LLRT--NLDSFYVRY-SDPPFVKLEKLRLLLKLV-T--PSVAPE-----ILKELAEYASG- 379 (746)
T ss_pred HHHHHHHHHHHC--HH---HHHH--HHHhhhccc-CCcHHHHHHHHHHHHHHc-C--cccHHH-----HHHHHHHHhhc-
Confidence 998887776531 11 1111 122222222 234468999999999998 2 223322 34555555555
Q ss_pred CCHHHHHHHHHHHhcCCC-ChhhHHHHHhcCCHHHHHHHhhCCCCCCCchhhHHHHHHHHHHHhcCCCCHHHHHHHHHcC
Q 001833 735 HNEEEIASAMGILSKLPE-VPQFTQWLLDAGALPIVLNFLKNGRQNDPNRFQVVENAVGALRRFTAPTNLEWQKRAAEAG 813 (1008)
Q Consensus 735 ~~~~v~~~a~~~L~nL~~-~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~v~~~a~~aL~~L~~~~~~~~~~~l~~~g 813 (1008)
.+.+.+..++.+++.++. .+... ...+..|++++..+ . .+...++.++.++... .|+..
T Consensus 380 ~D~ef~r~aIrAIg~lA~k~~~~a-----~~cV~~Ll~ll~~~------~-~~v~e~i~vik~Ilrk-yP~~~------- 439 (746)
T PTZ00429 380 VDMVFVVEVVRAIASLAIKVDSVA-----PDCANLLLQIVDRR------P-ELLPQVVTAAKDIVRK-YPELL------- 439 (746)
T ss_pred CCHHHHHHHHHHHHHHHHhChHHH-----HHHHHHHHHHhcCC------c-hhHHHHHHHHHHHHHH-CccHH-------
Confidence 466888999999999987 33332 23577888888762 2 2344678888888765 34321
Q ss_pred ChHHHHHHh---hcCChHHHHHHHHHHhhhhhcCCCCCCCCCCCCcccccCCCCCCcccccCcccCcccchhHhhccchH
Q 001833 814 VIPKLVQLL---EYGTTLTKEHAATSLARFSKNSLGLSRPIPKRKGFWCFSPPPEIGCQVHGGLCGIESSFCLLEANAVR 890 (1008)
Q Consensus 814 ~l~~Lv~lL---~~~~~~v~~~Aa~aL~nLs~~~~~l~~~~~~~~g~~~~~~~~~~~c~vh~~~c~~~~~~~l~~~g~i~ 890 (1008)
.++.|+..+ .-.+++.+....|.|+.++..-+ +. ...+.
T Consensus 440 il~~L~~~~~~~~i~e~~AKaaiiWILGEy~~~I~---------------------------------~a-----~~~L~ 481 (746)
T PTZ00429 440 MLDTLVTDYGADEVVEEEAKVSLLWMLGEYCDFIE---------------------------------NG-----KDIIQ 481 (746)
T ss_pred HHHHHHHhhcccccccHHHHHHHHHHHHhhHhhHh---------------------------------hH-----HHHHH
Confidence 344555433 23577899999999999873211 00 12344
Q ss_pred HHHHhhcCCChhhhHHHHHHHHhhh-cccccchhhHHHHhcCchHHHHHHh--cCCChHHHHHHHHHH
Q 001833 891 PLVRVLEDPDHGACEASLDALVTLI-EGERLQNGSKVLEDANAIDRMVRFL--SSPSPKLQEKALDSV 955 (1008)
Q Consensus 891 ~Lv~lL~~~d~~v~~~al~aL~~L~-~~~~~~~~~~~i~~~~~i~~l~~ll--~~~~~~l~~~a~~~L 955 (1008)
.++.-+.+.++.||.+.+.+...+. ... .+... -+..+++.. .+.|+++|.+|.--.
T Consensus 482 ~~i~~f~~E~~~VqlqlLta~vKlfl~~p--~~~~~------~l~~vL~~~t~~~~d~DVRDRA~~Y~ 541 (746)
T PTZ00429 482 RFIDTIMEHEQRVQLAILSAAVKMFLRDP--QGMEP------QLNRVLETVTTHSDDPDVRDRAFAYW 541 (746)
T ss_pred HHHhhhccCCHHHHHHHHHHHHHHHhcCc--HHHHH------HHHHHHHHHHhcCCChhHHHHHHHHH
Confidence 4455445567889999999999888 321 11111 234455433 357889999998554
No 43
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=99.05 E-value=5.8e-08 Score=108.69 Aligned_cols=354 Identities=15% Similarity=0.098 Sum_probs=233.0
Q ss_pred ChHHHHHHhcccCCCCcchHHHHHHHHHHHhccccccccCCcccc-cccchhHHHHHHHhhccCChHHHHHHHHHHHHhc
Q 001833 585 AVGPLVDLLLHHSSSSSSLREETATAIMHLAVSTMYQESSQTPVT-LLESDKEIFMLFSLINLTGPNVQQRILQTFNALC 663 (1008)
Q Consensus 585 ~v~~Ll~ll~~~~~~~~~~~~~a~~~L~nLa~~~~~~~~~~~~~~-~l~~~~~i~~L~~ll~~~~~~v~~~al~aL~~L~ 663 (1008)
.+..++.++...+. +.+.+..+..+.-|......+.. .+.. .+...+...+++.++...+.-++..+...|..+.
T Consensus 54 y~~~~l~ll~~~~~--~d~vqyvL~Li~dll~~~~~~~~--~f~~~~~~~~~~~~~fl~lL~~~d~~i~~~a~~iLt~l~ 129 (429)
T cd00256 54 YVKTFVNLLSQIDK--DDTVRYVLTLIDDMLQEDDTRVK--LFHDDALLKKKTWEPFFNLLNRQDQFIVHMSFSILAKLA 129 (429)
T ss_pred HHHHHHHHHhccCc--HHHHHHHHHHHHHHHHhchHHHH--HHHHHhhccccchHHHHHHHcCCchhHHHHHHHHHHHHH
Confidence 45566666654332 45666666666666654432221 0000 0112356778888999888889999999999987
Q ss_pred cCCChhhHHHHhhhcCChHHHHHhhccC-ChhHHHHHHHHHHHhccCCChhHHHhhhcccchHHHHHHhcCCC-CHHHHH
Q 001833 664 RSPSAGNIKTTLTQCSAIPVLVQLCEHD-NENVRANAVKLFCCLVDDGDEAIIREHVGQKCLETLVTIIQSSH-NEEEIA 741 (1008)
Q Consensus 664 ~~~~~~~~~~~i~e~~~i~~Lv~ll~~~-~~~v~~~a~~~L~~Ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~-~~~v~~ 741 (1008)
....... ...... ...+.|...+.+. +...+..++.+|..|.. .++.+..+.+.++++.|+.+|.... ....+.
T Consensus 130 ~~~~~~~-~~~~l~-~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~--~~~~R~~f~~~~~v~~L~~~L~~~~~~~Ql~Y 205 (429)
T cd00256 130 CFGLAKM-EGSDLD-YYFNWLKEQLNNITNNDYVQTAARCLQMLLR--VDEYRFAFVLADGVPTLVKLLSNATLGFQLQY 205 (429)
T ss_pred hcCcccc-chhHHH-HHHHHHHHHhhccCCcchHHHHHHHHHHHhC--CchHHHHHHHccCHHHHHHHHhhccccHHHHH
Confidence 6422110 000000 1334556666654 46677778889988852 3445566667789999999998765 668899
Q ss_pred HHHHHHhcCCCChhhHHHHHhcCCHHHHHHHhhCCCCCCCchhhHHHHHHHHHHHhcCCC-----CHHHHHHHHHcCChH
Q 001833 742 SAMGILSKLPEVPQFTQWLLDAGALPIVLNFLKNGRQNDPNRFQVVENAVGALRRFTAPT-----NLEWQKRAAEAGVIP 816 (1008)
Q Consensus 742 ~a~~~L~nL~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~v~~~a~~aL~~L~~~~-----~~~~~~~l~~~g~l~ 816 (1008)
.++-+++-|+.+++....+...+.++.++++++.. ..+.+.+-++.+|.|+.... .......+++.|+.+
T Consensus 206 ~~ll~lWlLSF~~~~~~~~~~~~~i~~l~~i~k~s-----~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~l~~ 280 (429)
T cd00256 206 QSIFCIWLLTFNPHAAEVLKRLSLIQDLSDILKES-----TKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQCKVLK 280 (429)
T ss_pred HHHHHHHHHhccHHHHHhhccccHHHHHHHHHHhh-----hhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHcChHH
Confidence 99999999999887888888899999999999984 57889999999999999742 223455677778777
Q ss_pred HHHHHhhc--CChHHHHHHHHHHhhhhhcCCCCCCCC----CCCCcccccCCCCCCcccccCcccC-cccchhHhhc--c
Q 001833 817 KLVQLLEY--GTTLTKEHAATSLARFSKNSLGLSRPI----PKRKGFWCFSPPPEIGCQVHGGLCG-IESSFCLLEA--N 887 (1008)
Q Consensus 817 ~Lv~lL~~--~~~~v~~~Aa~aL~nLs~~~~~l~~~~----~~~~g~~~~~~~~~~~c~vh~~~c~-~~~~~~l~~~--g 887 (1008)
.+-.+... +|+++...-...-..|......++..- .-..| .-.=.|+|..--. .+++..+-+. .
T Consensus 281 ~l~~L~~rk~~DedL~edl~~L~e~L~~~~k~ltsfD~Y~~El~sg-------~L~WSp~H~se~FW~EN~~kf~~~~~~ 353 (429)
T cd00256 281 TLQSLEQRKYDDEDLTDDLKFLTEELKNSVQDLSSFDEYKSELRSG-------RLHWSPVHKSEKFWRENADRLNEKNYE 353 (429)
T ss_pred HHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcC-------CccCCCCCCCchHHHHHHHHHHhcchH
Confidence 55555443 466666554444444433322222100 00011 1122356631111 1233333332 4
Q ss_pred chHHHHHhhc-CCChhhhHHHHHHHHhhhcccccchhhHHHHhcCchHHHHHHhcCCChHHHHHHHHHHHHHhc
Q 001833 888 AVRPLVRVLE-DPDHGACEASLDALVTLIEGERLQNGSKVLEDANAIDRMVRFLSSPSPKLQEKALDSVERIFR 960 (1008)
Q Consensus 888 ~i~~Lv~lL~-~~d~~v~~~al~aL~~L~~~~~~~~~~~~i~~~~~i~~l~~ll~~~~~~l~~~a~~~L~~l~~ 960 (1008)
.++.|+++|. +.|+.+...|+.=++.++ .....++..+.+.||-+.++++++++|++|+..|+.++.++..
T Consensus 354 llk~L~~iL~~s~d~~~laVAc~Dige~v--r~~P~gr~i~~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQklm~ 425 (429)
T cd00256 354 LLKILIHLLETSVDPIILAVACHDIGEYV--RHYPRGKDVVEQLGGKQRVMRLLNHEDPNVRYEALLAVQKLMV 425 (429)
T ss_pred HHHHHHHHHhcCCCcceeehhhhhHHHHH--HHCccHHHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 6788999995 678888888999999999 1123788889999999999999999999999999999988753
No 44
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=99.02 E-value=5.1e-09 Score=98.36 Aligned_cols=117 Identities=27% Similarity=0.378 Sum_probs=105.6
Q ss_pred HHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHHcCC-hhhHHHHhhcCcHHHHHHHhccCCHHHHHHHHHHHHHhhCCC-
Q 001833 497 QMAKANYFKHLLQRLSAGPESVKMRMATTLAEMELT-DHHKASLLEGNVLGPLLHLVSRGDIQMKKVAVKALRNLSSVP- 574 (1008)
Q Consensus 497 ~i~~~g~v~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~-~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~~- 574 (1008)
.+++.|+++.+++.+.+++...+..++.+|++++.. ++.+..+.+.|+++.++++|.+.++.++..|+++|.+|+..+
T Consensus 2 ~~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~ 81 (120)
T cd00020 2 AVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPE 81 (120)
T ss_pred hHHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcH
Confidence 467899999999999999999999999999999876 688888888999999999999999999999999999999755
Q ss_pred chhHHHHhcCChHHHHHHhcccCCCCcchHHHHHHHHHHHhc
Q 001833 575 QNGLQMIKEGAVGPLVDLLLHHSSSSSSLREETATAIMHLAV 616 (1008)
Q Consensus 575 ~~~~~i~~~G~v~~Ll~ll~~~~~~~~~~~~~a~~~L~nLa~ 616 (1008)
..+..+.+.|+++.+++++...+ ..+++.++++|.+|++
T Consensus 82 ~~~~~~~~~g~l~~l~~~l~~~~---~~~~~~a~~~l~~l~~ 120 (120)
T cd00020 82 DNKLIVLEAGGVPKLVNLLDSSN---EDIQKNATGALSNLAS 120 (120)
T ss_pred HHHHHHHHCCChHHHHHHHhcCC---HHHHHHHHHHHHHhhC
Confidence 56677788999999999998764 6799999999999973
No 45
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.98 E-value=1.7e-07 Score=107.85 Aligned_cols=345 Identities=15% Similarity=0.131 Sum_probs=236.7
Q ss_pred cchHHHHHHHhcC-CChHHHHHHHHHHHhhc-CCcccHHHHHhcCcHHHHHHHHhc-CCHHHHHHHHHHHHHHcCChhhH
Q 001833 460 QGCILLLVTMASS-DDNQASRDAQELLENLS-FSDDNVVQMAKANYFKHLLQRLSA-GPESVKMRMATTLAEMELTDHHK 536 (1008)
Q Consensus 460 ~g~i~~Lv~lL~~-~~~~~~~~a~~aL~~Ls-~~~~n~~~i~~~g~v~~Lv~~L~~-~~~~~~~~aa~~L~~Ls~~~~~k 536 (1008)
.-.+|.|+.+|+. .+.++...|+++|.+|+ ..+.....+++.++||.|++.|.. ...++.++++.+|-.++....
T Consensus 210 ~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~-- 287 (1051)
T KOG0168|consen 210 KSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHP-- 287 (1051)
T ss_pred HHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcc--
Confidence 4678999999985 57899999999999998 488889999999999999987654 468899999999999875332
Q ss_pred HHHhhcCcHHHHHHHhccCCHHHHHHHHHHHHHhhC--CCchhHHHHhcCChHHHHHHhcccCCCCcchHHHHHHHHHHH
Q 001833 537 ASLLEGNVLGPLLHLVSRGDIQMKKVAVKALRNLSS--VPQNGLQMIKEGAVGPLVDLLLHHSSSSSSLREETATAIMHL 614 (1008)
Q Consensus 537 ~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~--~~~~~~~i~~~G~v~~Ll~ll~~~~~~~~~~~~~a~~~L~nL 614 (1008)
.++.+.|++...+..+.--+..+++.|+.+..|+|. .++.-..+++ ++|.|..+|+..+ ....+.++-++..+
T Consensus 288 ~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi~sd~f~~v~e--alPlL~~lLs~~D---~k~ies~~ic~~ri 362 (1051)
T KOG0168|consen 288 KAILQAGALSAVLSYLDFFSIHAQRVALAIAANCCKSIRSDEFHFVME--ALPLLTPLLSYQD---KKPIESVCICLTRI 362 (1051)
T ss_pred HHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchHHHH--HHHHHHHHHhhcc---chhHHHHHHHHHHH
Confidence 357789999999999877788999999999999994 4555555555 6999999998776 45788999999999
Q ss_pred hccccccccCCcccccccchhHHHHHHHhhccCC----hHHHHHHHHHHHHhccCCChhhHHHHhhhcCChHHHHHhhcc
Q 001833 615 AVSTMYQESSQTPVTLLESDKEIFMLFSLINLTG----PNVQQRILQTFNALCRSPSAGNIKTTLTQCSAIPVLVQLCEH 690 (1008)
Q Consensus 615 a~~~~~~~~~~~~~~~l~~~~~i~~L~~ll~~~~----~~v~~~al~aL~~L~~~~~~~~~~~~i~e~~~i~~Lv~ll~~ 690 (1008)
+.....- +...+.+.+.+.|....+++.-.. ..+....++.|..+|++ .+.....+...++...|..++..
T Consensus 363 ~d~f~h~---~~kLdql~s~dLi~~~~qLlsvt~t~Ls~~~~~~vIrmls~msS~--~pl~~~tl~k~~I~~~L~~il~g 437 (1051)
T KOG0168|consen 363 ADGFQHG---PDKLDQLCSHDLITNIQQLLSVTPTILSNGTYTGVIRMLSLMSSG--SPLLFRTLLKLDIADTLKRILQG 437 (1051)
T ss_pred HHhcccC---hHHHHHHhchhHHHHHHHHHhcCcccccccchhHHHHHHHHHccC--ChHHHHHHHHhhHHHHHHHHHhc
Confidence 8743221 112345678888888888887443 34556678888888874 34555556666777777776653
Q ss_pred CC--------------hhHHHHHHHHHHHhccCCC---------------------------------------------
Q 001833 691 DN--------------ENVRANAVKLFCCLVDDGD--------------------------------------------- 711 (1008)
Q Consensus 691 ~~--------------~~v~~~a~~~L~~Ls~~~~--------------------------------------------- 711 (1008)
.+ |.-.......+..|.-..+
T Consensus 438 ~s~s~nas~~~~l~r~Pnel~e~~sl~~eLlp~~p~e~i~~~~~~~~~~~~n~~~~~~~~~~d~~~s~~~~~~~~~ri~~ 517 (1051)
T KOG0168|consen 438 YSKSANASLHELLSRSPNELYELTSLIIELLPCLPVEGIFAVDCSLIYEIVNLADELLWQWRDDRGSWHTYTNIDSRIIE 517 (1051)
T ss_pred cCcCcccccccccccCcHHHHHHHHHHheeecCCcccceeehhhhhhcccccccccccccCccccccccccchhhhhhhh
Confidence 21 1111111111111100000
Q ss_pred ----------------------------hhHHHhhhcccchHHHHHHhcCCCCHHHHHHHHHHHhcCCC--ChhhHHHHH
Q 001833 712 ----------------------------EAIIREHVGQKCLETLVTIIQSSHNEEEIASAMGILSKLPE--VPQFTQWLL 761 (1008)
Q Consensus 712 ----------------------------~~~~~~~~~~~~i~~Lv~lL~~~~~~~v~~~a~~~L~nL~~--~~~~~~~l~ 761 (1008)
++..+ -+....++.|+++..+.-+..++..++.+|..+.. +.+....++
T Consensus 518 q~~~~~~t~~~~~dkl~~~~r~~~l~nqpel~q-~F~~~llpVLveVYsSsA~~~VR~kcL~Ailrlvy~s~seli~slL 596 (1051)
T KOG0168|consen 518 QINEDTGTSRKQQDKLNGSAREGLLKNQPELLQ-SFGKDLLPVLVEVYSSSANPDVRYKCLSAILRLVYFSNSELIGSLL 596 (1051)
T ss_pred hhccCcccchhhhhhcCCchhhhhhhcCHHHHH-HHHHHHHHHHHHHHhccCCchhhHHHHHHHHHHHhhCCHHHHHHHH
Confidence 00011 11224678888888888788999999999999876 666655555
Q ss_pred hcCCH-HHHHHHhhCCCCCCCchhhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHHHhh
Q 001833 762 DAGAL-PIVLNFLKNGRQNDPNRFQVVENAVGALRRFTAPTNLEWQKRAAEAGVIPKLVQLLE 823 (1008)
Q Consensus 762 ~~g~l-~~Lv~lL~~~~~~~~~~~~v~~~a~~aL~~L~~~~~~~~~~~l~~~g~l~~Lv~lL~ 823 (1008)
....+ ..+...|.+ .+..+...|+.+.--|..-..+-+-..++.+|++..+-+|..
T Consensus 597 k~~~vSS~lAG~lss------kD~~vlVgALQvAEiLmeKlpd~F~~~F~REGV~~~v~~L~~ 653 (1051)
T KOG0168|consen 597 KNTNVSSHLAGMLSS------KDLTVLVGALQVAEILMEKLPDTFSPSFRREGVFHAVKQLSV 653 (1051)
T ss_pred hcchHHHHHHhhhhc------CCCeeEeehHHHHHHHHHHhHHHhhhhHhhhhHHHHHHHHhc
Confidence 54444 556666666 555666666666665555433444555666777766666655
No 46
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=98.95 E-value=5.1e-07 Score=101.21 Aligned_cols=348 Identities=15% Similarity=0.149 Sum_probs=232.0
Q ss_pred chHHHHHHHhc-CCChHHHHHHHHHHHhhcCCcccHH-HHHh-----cCcHHHHHHHHhcCCHHHHHHHHHHHHHHcCCh
Q 001833 461 GCILLLVTMAS-SDDNQASRDAQELLENLSFSDDNVV-QMAK-----ANYFKHLLQRLSAGPESVKMRMATTLAEMELTD 533 (1008)
Q Consensus 461 g~i~~Lv~lL~-~~~~~~~~~a~~aL~~Ls~~~~n~~-~i~~-----~g~v~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~~ 533 (1008)
..+..++++++ ...+++.+..+..+..|...++.+. .+.+ .....+++.+|..++.-+...++.+|..+....
T Consensus 53 ~y~~~~l~ll~~~~~~d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl~lL~~~d~~i~~~a~~iLt~l~~~~ 132 (429)
T cd00256 53 QYVKTFVNLLSQIDKDDTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFFNLLNRQDQFIVHMSFSILAKLACFG 132 (429)
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHHHHHcCCchhHHHHHHHHHHHHHhcC
Confidence 45566677776 4566777777777777766555433 3333 356788888898888888999999999885432
Q ss_pred hhHH-HHhhcCcHHHHHHHhccC-CHHHHHHHHHHHHHhhCCCchhHHHHhcCChHHHHHHhcccCCCCcchHHHHHHHH
Q 001833 534 HHKA-SLLEGNVLGPLLHLVSRG-DIQMKKVAVKALRNLSSVPQNGLQMIKEGAVGPLVDLLLHHSSSSSSLREETATAI 611 (1008)
Q Consensus 534 ~~k~-~i~~~g~i~~Lv~lL~~~-~~~~~~~A~~aL~~L~~~~~~~~~i~~~G~v~~Ll~ll~~~~~~~~~~~~~a~~~L 611 (1008)
..+. .....-....|...++++ +...+..|+.+|..|...++.|..+.+.++++.|+.++.....+ ..++.+++-++
T Consensus 133 ~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~f~~~~~v~~L~~~L~~~~~~-~Ql~Y~~ll~l 211 (429)
T cd00256 133 LAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRFAFVLADGVPTLVKLLSNATLG-FQLQYQSIFCI 211 (429)
T ss_pred ccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHHHHHHHccCHHHHHHHHhhcccc-HHHHHHHHHHH
Confidence 2111 000011334555666654 46788889999999999999999999999999999999865433 57899999999
Q ss_pred HHHhccccccccCCcccccccchhHHHHHHHhhcc-CChHHHHHHHHHHHHhccCCC----hhhHHHHhhhcCChHHHHH
Q 001833 612 MHLAVSTMYQESSQTPVTLLESDKEIFMLFSLINL-TGPNVQQRILQTFNALCRSPS----AGNIKTTLTQCSAIPVLVQ 686 (1008)
Q Consensus 612 ~nLa~~~~~~~~~~~~~~~l~~~~~i~~L~~ll~~-~~~~v~~~al~aL~~L~~~~~----~~~~~~~i~e~~~i~~Lv~ 686 (1008)
|-|+.++.... .+...+.|+.++.+++. ..+.+.+-++.+|.|+...+. .......+.++|..+.+-.
T Consensus 212 WlLSF~~~~~~-------~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~l~~~l~~ 284 (429)
T cd00256 212 WLLTFNPHAAE-------VLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQCKVLKTLQS 284 (429)
T ss_pred HHHhccHHHHH-------hhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHcChHHHHHH
Confidence 99998766433 45567899999999984 457788899999999987532 2234456667765554444
Q ss_pred hhccC--ChhHHHHHHHHHHHhccCCChhHHHhhhcccchHHHHHHhcCCCCHHHHHHHHHHHhcC-CC-----ChhhHH
Q 001833 687 LCEHD--NENVRANAVKLFCCLVDDGDEAIIREHVGQKCLETLVTIIQSSHNEEEIASAMGILSKL-PE-----VPQFTQ 758 (1008)
Q Consensus 687 ll~~~--~~~v~~~a~~~L~~Ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~v~~~a~~~L~nL-~~-----~~~~~~ 758 (1008)
+.... |+++....-.+-..|. +..... .-.+.-..-+.++ .|..= ++ -.++..
T Consensus 285 L~~rk~~DedL~edl~~L~e~L~-----~~~k~l---tsfD~Y~~El~sg-----------~L~WSp~H~se~FW~EN~~ 345 (429)
T cd00256 285 LEQRKYDDEDLTDDLKFLTEELK-----NSVQDL---SSFDEYKSELRSG-----------RLHWSPVHKSEKFWRENAD 345 (429)
T ss_pred HhcCCCCcHHHHHHHHHHHHHHH-----HHHHHc---CCHHHHHHHHhcC-----------CccCCCCCCCchHHHHHHH
Confidence 44333 6666554433322232 011110 1111111111111 00000 00 112222
Q ss_pred HHHhcC--CHHHHHHHhhCCCCCCCchhhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHHHhhcCChHHHHHHHHH
Q 001833 759 WLLDAG--ALPIVLNFLKNGRQNDPNRFQVVENAVGALRRFTAPTNLEWQKRAAEAGVIPKLVQLLEYGTTLTKEHAATS 836 (1008)
Q Consensus 759 ~l~~~g--~l~~Lv~lL~~~~~~~~~~~~v~~~a~~aL~~L~~~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~v~~~Aa~a 836 (1008)
.+-+.+ .+..|+++|... .++.+..-||.=++.++.. .|..+..+.+.|+=..+.+++.+.+++|+.+|..|
T Consensus 346 kf~~~~~~llk~L~~iL~~s-----~d~~~laVAc~Dige~vr~-~P~gr~i~~~lg~K~~vM~Lm~h~d~~Vr~eAL~a 419 (429)
T cd00256 346 RLNEKNYELLKILIHLLETS-----VDPIILAVACHDIGEYVRH-YPRGKDVVEQLGGKQRVMRLLNHEDPNVRYEALLA 419 (429)
T ss_pred HHHhcchHHHHHHHHHHhcC-----CCcceeehhhhhHHHHHHH-CccHHHHHHHcCcHHHHHHHhcCCCHHHHHHHHHH
Confidence 333322 568899999652 4567788899999999998 68999999999999999999999999999999999
Q ss_pred Hhhhh
Q 001833 837 LARFS 841 (1008)
Q Consensus 837 L~nLs 841 (1008)
+..+.
T Consensus 420 vQklm 424 (429)
T cd00256 420 VQKLM 424 (429)
T ss_pred HHHHH
Confidence 99885
No 47
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=98.95 E-value=1.1e-08 Score=96.17 Aligned_cols=116 Identities=30% Similarity=0.372 Sum_probs=106.0
Q ss_pred hhcccchHHHHHHhcCCCCHHHHHHHHHHHhcCCC-ChhhHHHHHhcCCHHHHHHHhhCCCCCCCchhhHHHHHHHHHHH
Q 001833 718 HVGQKCLETLVTIIQSSHNEEEIASAMGILSKLPE-VPQFTQWLLDAGALPIVLNFLKNGRQNDPNRFQVVENAVGALRR 796 (1008)
Q Consensus 718 ~~~~~~i~~Lv~lL~~~~~~~v~~~a~~~L~nL~~-~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~v~~~a~~aL~~ 796 (1008)
+.+.|+++.|++++.++ +.+++..++.+|++++. .+.....+.+.|+++.++.+|.+ .++.++..++++|++
T Consensus 3 ~~~~~~i~~l~~~l~~~-~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~------~~~~v~~~a~~~L~~ 75 (120)
T cd00020 3 VIQAGGLPALVSLLSSS-DENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKS------EDEEVVKAALWALRN 75 (120)
T ss_pred HHHcCChHHHHHHHHcC-CHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhC------CCHHHHHHHHHHHHH
Confidence 45678999999999985 57899999999999999 58888999999999999999998 678999999999999
Q ss_pred hcCCCCHHHHHHHHHcCChHHHHHHhhcCChHHHHHHHHHHhhhh
Q 001833 797 FTAPTNLEWQKRAAEAGVIPKLVQLLEYGTTLTKEHAATSLARFS 841 (1008)
Q Consensus 797 L~~~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~v~~~Aa~aL~nLs 841 (1008)
|+.. .+.....+.+.|+++.|++++.+.+..++..++++|.+++
T Consensus 76 l~~~-~~~~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 76 LAAG-PEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred HccC-cHHHHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 9996 6677888899999999999999999999999999999986
No 48
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.92 E-value=2.5e-05 Score=89.96 Aligned_cols=459 Identities=17% Similarity=0.172 Sum_probs=291.6
Q ss_pred hHHHHHHHHHHHHHHhhchhhhhhHhhcCchHHHHHHHcC--CCHHHHHHHHHHHHHhccCCh------hhH--------
Q 001833 349 VEEVLHCLEQLQDLCQQRDQHREWVILENYIPKLIYLLGS--KNRDVRNRALIILHILVKDSN------DTK-------- 412 (1008)
Q Consensus 349 ~~~~~~al~~L~~l~~~~~~~r~~i~~~g~i~~L~~lL~s--~~~~~~~~Al~~L~~Ls~~~~------~~k-------- 412 (1008)
.+.+..|++.|..+++. .|..++..| .+.|+..|.. .|++.-..++..++++...++ +.+
T Consensus 37 ~eDRR~A~rgLKa~srk---YR~~Vga~G-mk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~~~v~dds~qsdd~g~~ 112 (970)
T KOG0946|consen 37 LEDRRDAVRGLKAFSRK---YREEVGAQG-MKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDSPEVMDDSTQSDDLGLW 112 (970)
T ss_pred hhhHHHHHHHHHHHHHH---HHHHHHHcc-cHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcchhhcccchhhhHHHHH
Confidence 46677888888888854 566666666 7888998876 478888999999998877652 122
Q ss_pred --HHhhccCCcHHHHHHHhcc-ChhHHHHHHHHHHHhc--cCchhhHHhhcccchHHHHHHHhcCCChHHHHHHHHHHHh
Q 001833 413 --ERLANGDDAVESIVRSLGR-RIEERKLAVALLLELS--TCNTLRDQIGDVQGCILLLVTMASSDDNQASRDAQELLEN 487 (1008)
Q Consensus 413 --~~i~~~~g~i~~Lv~~L~~-~~~~~~~A~~~L~~Ls--~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~ 487 (1008)
+.++...+.|..++..+.. +-.+|..|+.+|-++- +..+.+..+...+-+|..|+.+|......++..++-.|..
T Consensus 113 iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~DsrE~IRNe~iLlL~e 192 (970)
T KOG0946|consen 113 IAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRDSREPIRNEAILLLSE 192 (970)
T ss_pred HHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhhhhhhhchhHHHHHHH
Confidence 2233336778888888865 6678999999999873 3568888888888999999999999999999999999999
Q ss_pred hcCCcccHHHHHh-cCcHHHHHHHHhcCC----HHHHHHHHHHHHHHcCC-hhhHHHHhhcCcHHHHHHHhccC---C--
Q 001833 488 LSFSDDNVVQMAK-ANYFKHLLQRLSAGP----ESVKMRMATTLAEMELT-DHHKASLLEGNVLGPLLHLVSRG---D-- 556 (1008)
Q Consensus 488 Ls~~~~n~~~i~~-~g~v~~Lv~~L~~~~----~~~~~~aa~~L~~Ls~~-~~~k~~i~~~g~i~~Lv~lL~~~---~-- 556 (1008)
|.....+.++++. ..++..|..++.... .-+.+.|+..|.+|-.+ ..|...+.+.+.||.|.++|.-. +
T Consensus 193 L~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~~i~rL~klL~~f~~~d~E 272 (970)
T KOG0946|consen 193 LVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFREGSYIPRLLKLLSVFEFGDGE 272 (970)
T ss_pred HHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhccccHHHHHhhcCcccccCcc
Confidence 9988777666654 788999999987542 24678899999888554 47777788889999999888532 2
Q ss_pred -----H---HHHHHHHHHHHHhhC--C-----CchhHHHHhcCChHHHHHHhcccCCCCcchHHHHHHHHHHHhcccccc
Q 001833 557 -----I---QMKKVAVKALRNLSS--V-----PQNGLQMIKEGAVGPLVDLLLHHSSSSSSLREETATAIMHLAVSTMYQ 621 (1008)
Q Consensus 557 -----~---~~~~~A~~aL~~L~~--~-----~~~~~~i~~~G~v~~Ll~ll~~~~~~~~~~~~~a~~~L~nLa~~~~~~ 621 (1008)
+ .....++.++..|.. + +.|...+.+.+++..|..++.+.. -+..++..+.-+++++..++...
T Consensus 273 v~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~il~~~~-vp~dIltesiitvAevVRgn~~n 351 (970)
T KOG0946|consen 273 VFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVSSHLLDVLCTILMHPG-VPADILTESIITVAEVVRGNARN 351 (970)
T ss_pred cccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHHHHHHHHcCCC-CcHhHHHHHHHHHHHHHHhchHH
Confidence 1 122355666666653 1 123456778899999999998654 34678889999999988865433
Q ss_pred ccC--Cccccccc--chhHHHHHHHhhccC-ChHHHHHHHHHHHHhccCCChhhHHHHhhhcCChHHHHHhhccCCh-hH
Q 001833 622 ESS--QTPVTLLE--SDKEIFMLFSLINLT-GPNVQQRILQTFNALCRSPSAGNIKTTLTQCSAIPVLVQLCEHDNE-NV 695 (1008)
Q Consensus 622 ~~~--~~~~~~l~--~~~~i~~L~~ll~~~-~~~v~~~al~aL~~L~~~~~~~~~~~~i~e~~~i~~Lv~ll~~~~~-~v 695 (1008)
... .....-.. ....+-.++.+..+. .+..|..++.+|...... +.+.+ ..++..++....+... .+
T Consensus 352 Q~~F~~v~~p~~~~Pr~sivvllmsm~ne~q~~~lRcAv~ycf~s~l~d--N~~gq-----~~~l~tllp~~~nst~Nsl 424 (970)
T KOG0946|consen 352 QDEFADVTAPSIPNPRPSIVVLLMSMFNEKQPFSLRCAVLYCFRSYLYD--NDDGQ-----RKFLKTLLPSSTNSTSNSL 424 (970)
T ss_pred HHHHhhccCCCCCCCccchhHHHHHHHhccCCchHHHHHHHHHHHHHhc--chhhH-----HHHHHHHhhhhccccccch
Confidence 220 00000010 122445566666644 567899999999887764 33322 2346677777766644 34
Q ss_pred HHHHHHHHHHhccCCChhHHHhhhcccchHHHHHHhcCCCCHHHHHHHHHHHhcCCC-ChhhHHHHHhcCCHHHHHHHhh
Q 001833 696 RANAVKLFCCLVDDGDEAIIREHVGQKCLETLVTIIQSSHNEEEIASAMGILSKLPE-VPQFTQWLLDAGALPIVLNFLK 774 (1008)
Q Consensus 696 ~~~a~~~L~~Ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~v~~~a~~~L~nL~~-~~~~~~~l~~~g~l~~Lv~lL~ 774 (1008)
......+...-+ .+....++.. -.|..++.. +...++.-+++..+... +++....- .+-....+..
T Consensus 425 ~ag~l~~~~l~s----~d~~~nwFt~---v~lmh~l~d--n~~~kEeLlrV~l~~~~gn~p~tlL~----~~ct~~~~~~ 491 (970)
T KOG0946|consen 425 SAGQLLLVGLSS----TDSLDNWFTA---VILMHLLQD--NDQLKEELLRVPLAVDTGNDPDTLLF----QQCTNLKLQG 491 (970)
T ss_pred hhhhHHHHhhcc----chHHHHHHHH---HHHHHHHHH--hHHHHHHHHhhhhcccCCCCchHHHH----HHHHHHHHHh
Confidence 333333333322 2223333322 123333333 23455556666655555 33221110 0111222222
Q ss_pred CCCCCCCchhhHHHHHHHHHHHhcCCCCHHH-HHHHHHcCChHHHHHHhhcC--C---hHHHHHHHHHHhh
Q 001833 775 NGRQNDPNRFQVVENAVGALRRFTAPTNLEW-QKRAAEAGVIPKLVQLLEYG--T---TLTKEHAATSLAR 839 (1008)
Q Consensus 775 ~~~~~~~~~~~v~~~a~~aL~~L~~~~~~~~-~~~l~~~g~l~~Lv~lL~~~--~---~~v~~~Aa~aL~n 839 (1008)
. .....+..-+..|..+..+ +|.. ...+.+.+.++.|...+... + .-+|..++..|+-
T Consensus 492 t------~r~qt~vglLmlL~~WL~~-cp~AV~dFLs~~s~iq~Ltt~l~~n~~~Ese~viqgl~A~lLgl 555 (970)
T KOG0946|consen 492 T------SRHQTRVGLLMLLITWLYG-CPDAVKDFLSESSIIQYLTTQLMDNQGSESEQVIQGLCAFLLGL 555 (970)
T ss_pred h------hhHHHHHHHHHHHHHHHcC-CcHHHHHHHccccHHHHHHHHHhhcccchHHHHHHHHHHHHHHH
Confidence 2 2223333455666666666 5554 45566788999998888654 2 2345545544443
No 49
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=98.79 E-value=3.6e-09 Score=77.53 Aligned_cols=39 Identities=36% Similarity=0.746 Sum_probs=30.6
Q ss_pred ccccccccCCceeccCcccccHHHHHHHHhcCC---CCCCCc
Q 001833 268 CPITRDVMVDPVETSSGQTFERSAIEKWFSDGN---NLCPLT 306 (1008)
Q Consensus 268 cpi~~~~m~dpv~~~~g~t~~r~~i~~w~~~~~---~~cp~~ 306 (1008)
|||++++|+|||++.+||+|++.+|++||+... ..||.+
T Consensus 1 CpiC~~~~~~Pv~l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKDPVSLPCGHSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SSEEE-SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhCCccccCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence 899999999999999999999999999997532 368864
No 50
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.78 E-value=1.2e-05 Score=92.34 Aligned_cols=537 Identities=12% Similarity=0.096 Sum_probs=308.9
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHhccCC-hhhHHHhhccCCcHHHHHHHhccC--hhHHHHHHHHHHHhccCchhhHHhhc
Q 001833 382 LIYLLGSKNRDVRNRALIILHILVKDS-NDTKERLANGDDAVESIVRSLGRR--IEERKLAVALLLELSTCNTLRDQIGD 458 (1008)
Q Consensus 382 L~~lL~s~~~~~~~~Al~~L~~Ls~~~-~~~k~~i~~~~g~i~~Lv~~L~~~--~~~~~~A~~~L~~Ls~~~~~~~~i~~ 458 (1008)
+..-|++..+.....|..++..++.-+ |.|. - .+.+..+++..... .-.++.++.+|..++.+-+-......
T Consensus 95 il~tL~~~ep~~~s~Aaq~va~IA~~ElP~n~----w-p~li~~lv~nv~~~~~~~~k~~slealGyice~i~pevl~~~ 169 (859)
T KOG1241|consen 95 ILRTLGSPEPRRPSSAAQCVAAIACIELPQNQ----W-PELIVTLVSNVGEEQASMVKESSLEALGYICEDIDPEVLEQQ 169 (859)
T ss_pred HHHHcCCCCCCccchHHHHHHHHHHhhCchhh----C-HHHHHHHHHhcccccchHHHHHHHHHHHHHHccCCHHHHHHH
Confidence 445566666666666666666655332 1111 0 23444444444332 23467788889998874333344444
Q ss_pred ccchHHHHHHHhc--CCChHHHHHHHHHHHhhcCCcc-c-HHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHHcC-Ch
Q 001833 459 VQGCILLLVTMAS--SDDNQASRDAQELLENLSFSDD-N-VVQMAKANYFKHLLQRLSAGPESVKMRMATTLAEMEL-TD 533 (1008)
Q Consensus 459 ~~g~i~~Lv~lL~--~~~~~~~~~a~~aL~~Ls~~~~-n-~~~i~~~g~v~~Lv~~L~~~~~~~~~~aa~~L~~Ls~-~~ 533 (1008)
...++..++.-.+ .++..++..|+.+|.|--.... | ...+-+.=++....+.-..++.+++..|...|..+.. .-
T Consensus 170 sN~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~nF~~E~ern~iMqvvcEatq~~d~~i~~aa~~ClvkIm~LyY 249 (859)
T KOG1241|consen 170 SNDILTAIVQGMRKEETSAAVRLAALNALYNSLEFTKANFNNEMERNYIMQVVCEATQSPDEEIQVAAFQCLVKIMSLYY 249 (859)
T ss_pred HhHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHHhhccHhhhceeeeeeeecccCCcHHHHHHHHHHHHHHHHHHH
Confidence 4566667776665 4577899999999987632111 1 1111112223334455556677888888888888743 33
Q ss_pred hhHHHHhhcCcHHHHHHHhccCCHHHHHHHHHHHHHhhCCC-----------------chhHHH--HhcCChHHHHHHhc
Q 001833 534 HHKASLLEGNVLGPLLHLVSRGDIQMKKVAVKALRNLSSVP-----------------QNGLQM--IKEGAVGPLVDLLL 594 (1008)
Q Consensus 534 ~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~~-----------------~~~~~i--~~~G~v~~Ll~ll~ 594 (1008)
+.-.........+.-+.-+++.++.+.-.+...=.++|... .+..-. .-.+++|.|+++|.
T Consensus 250 ~~m~~yM~~alfaitl~amks~~deValQaiEFWsticeEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~ 329 (859)
T KOG1241|consen 250 EFMEPYMEQALFAITLAAMKSDNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLELLT 329 (859)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHHHHH
Confidence 33333333445555667788889999888888777777311 011111 12267899999997
Q ss_pred ccCCC---Cc-chHHHHHHHHHHHhccccccccCCcccccccchhHHHHHHHhh----ccCChHHHHHHHHHHHHhccCC
Q 001833 595 HHSSS---SS-SLREETATAIMHLAVSTMYQESSQTPVTLLESDKEIFMLFSLI----NLTGPNVQQRILQTFNALCRSP 666 (1008)
Q Consensus 595 ~~~~~---~~-~~~~~a~~~L~nLa~~~~~~~~~~~~~~~l~~~~~i~~L~~ll----~~~~~~v~~~al~aL~~L~~~~ 666 (1008)
...++ +. .....|..+|.-++.. ..++.+++.+..+ ++++-.-++.++-++..+...|
T Consensus 330 kqde~~d~DdWnp~kAAg~CL~l~A~~--------------~~D~Iv~~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp 395 (859)
T KOG1241|consen 330 KQDEDDDDDDWNPAKAAGVCLMLFAQC--------------VGDDIVPHVLPFIEENIQNPDWRNREAAVMAFGSILEGP 395 (859)
T ss_pred hCCCCcccccCcHHHHHHHHHHHHHHH--------------hcccchhhhHHHHHHhcCCcchhhhhHHHHHHHhhhcCC
Confidence 63221 11 2334444445444431 1233445555554 4667778889999999999887
Q ss_pred ChhhHHHHhhhcCChHHHHHhhccCChhHHHHHHHHHHHhccCCChhHHHhhhcccchHHHHHHhcCCCCHHHHHHHHHH
Q 001833 667 SAGNIKTTLTQCSAIPVLVQLCEHDNENVRANAVKLFCCLVDDGDEAIIREHVGQKCLETLVTIIQSSHNEEEIASAMGI 746 (1008)
Q Consensus 667 ~~~~~~~~i~e~~~i~~Lv~ll~~~~~~v~~~a~~~L~~Ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~v~~~a~~~ 746 (1008)
+.......+. +++|.++.++.++.--++..+.|.|+.++............-...++.+++-|.+. +.+-..++|+
T Consensus 396 ~~~~Lt~iV~--qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~De--Prva~N~CWA 471 (859)
T KOG1241|consen 396 EPDKLTPIVI--QALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLNDE--PRVASNVCWA 471 (859)
T ss_pred chhhhhHHHh--hhhHHHHHHhcCchhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhhhC--chHHHHHHHH
Confidence 6555444443 57999999999888889999999999998333333333334456777777777664 4577889999
Q ss_pred HhcCCC--ChhhHHH----HHhcCCHHHHH-HHhhCCCCCCCchhhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHH
Q 001833 747 LSKLPE--VPQFTQW----LLDAGALPIVL-NFLKNGRQNDPNRFQVVENAVGALRRFTAPTNLEWQKRAAEAGVIPKLV 819 (1008)
Q Consensus 747 L~nL~~--~~~~~~~----l~~~g~l~~Lv-~lL~~~~~~~~~~~~v~~~a~~aL~~L~~~~~~~~~~~l~~~g~l~~Lv 819 (1008)
+-+|+. .+..... ... ...+.++ .+++...+.+-.+..+|-.|-.+|..+......+.-..+ .++.+.+.
T Consensus 472 f~~Laea~~eA~~s~~qt~~~t-~~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st~~vy~~v--~~~~l~il 548 (859)
T KOG1241|consen 472 FISLAEAAYEAAVSNGQTDPAT-PFYEAIIGSLLKVTDRADGNQSNLRSAAYEALMELIKNSTDDVYPMV--QKLTLVIL 548 (859)
T ss_pred HHHHHHHHHHhccCCCCCCccc-hhHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHcCcHHHHHHH--HHHHHHHH
Confidence 999874 1111111 111 2333333 334433332335678999999999999987333333222 22233322
Q ss_pred H---------HhhcCC----hHHHHHHHHHHhhhhhcCCCCCCCCCCCCcccccCCCCCCcccccCcccCcccchhHhhc
Q 001833 820 Q---------LLEYGT----TLTKEHAATSLARFSKNSLGLSRPIPKRKGFWCFSPPPEIGCQVHGGLCGIESSFCLLEA 886 (1008)
Q Consensus 820 ~---------lL~~~~----~~v~~~Aa~aL~nLs~~~~~l~~~~~~~~g~~~~~~~~~~~c~vh~~~c~~~~~~~l~~~ 886 (1008)
. .+...+ .+++..-|.+|..+.+.... .+.=+..
T Consensus 549 ~kl~q~i~~~~l~~~dr~q~~eLQs~Lc~~Lq~i~rk~~~---------------------------------~~~~~~d 595 (859)
T KOG1241|consen 549 EKLDQTISSQILSLADRAQLNELQSLLCNTLQSIIRKVGS---------------------------------DIREVSD 595 (859)
T ss_pred HHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHHHHHHccc---------------------------------cchhHHH
Confidence 2 222111 26777778888877643321 0001122
Q ss_pred cchHHHHHhhcC-CChhhhHHHHHHHHhhh--cccccchhhHHHHhcCchHHHHHHh-cCCChHHHHHHHHHHHHHhcCh
Q 001833 887 NAVRPLVRVLED-PDHGACEASLDALVTLI--EGERLQNGSKVLEDANAIDRMVRFL-SSPSPKLQEKALDSVERIFRLP 962 (1008)
Q Consensus 887 g~i~~Lv~lL~~-~d~~v~~~al~aL~~L~--~~~~~~~~~~~i~~~~~i~~l~~ll-~~~~~~l~~~a~~~L~~l~~~~ 962 (1008)
..+..+++++.. ....+.+-|+.|+.+++ .+..|..+...| .+.+..-+ +..+..+-..|+.++..+++.=
T Consensus 596 ~iM~lflri~~s~~s~~v~e~a~laV~tl~~~Lg~~F~kym~~f-----~pyL~~gL~n~~e~qVc~~aVglVgdl~raL 670 (859)
T KOG1241|consen 596 QIMGLFLRIFESKRSAVVHEEAFLAVSTLAESLGKGFAKYMPAF-----KPYLLMGLSNFQEYQVCAAAVGLVGDLARAL 670 (859)
T ss_pred HHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhHhHHHHHHHH-----HHHHHHHhhcchHHHHHHHHHHHHHHHHHHH
Confidence 457788889987 44558888999999988 343333332222 34444444 4455567777777777776542
Q ss_pred H-HHHHhccccCchhhhhccc
Q 001833 963 E-FKQKYGKSAQMPLVDLTQR 982 (1008)
Q Consensus 963 ~-~~~~~~~~~~~~Lv~l~~~ 982 (1008)
+ --..|.......|++-+++
T Consensus 671 ~~~i~py~d~~mt~Lvq~Lss 691 (859)
T KOG1241|consen 671 EDDILPYCDELMTVLVQCLSS 691 (859)
T ss_pred HhhhhhHHHHHHHHHHHHccC
Confidence 2 1223443334456655555
No 51
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.77 E-value=3.5e-06 Score=96.56 Aligned_cols=428 Identities=15% Similarity=0.168 Sum_probs=243.2
Q ss_pred cHHHHHHHhccChhHHHHHHHHHHHhccCchhhHHhhcccchHHHHHHHhcC--CChHHHHHHHHHHHhhc-CCccc-HH
Q 001833 421 AVESIVRSLGRRIEERKLAVALLLELSTCNTLRDQIGDVQGCILLLVTMASS--DDNQASRDAQELLENLS-FSDDN-VV 496 (1008)
Q Consensus 421 ~i~~Lv~~L~~~~~~~~~A~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~--~~~~~~~~a~~aL~~Ls-~~~~n-~~ 496 (1008)
+++.+.+.++.+...+..|-..|..++..+ -.+.+..|...|.+ .....+..|.-.|.|-- ..++. +.
T Consensus 3 ~~~~le~tlSpD~n~~~~Ae~~l~~~~~~n--------f~~F~~~Ls~vl~n~~~~~~~R~~AGL~LKN~L~akd~~~k~ 74 (859)
T KOG1241|consen 3 LLELLEKTLSPDQNVRKRAEKQLEQAQSQN--------FPQFLVLLSEVLANDNSSDVARMAAGLQLKNSLTAKDPERKQ 74 (859)
T ss_pred HHHHHHHHcCCCcchHHHHHHHHHHHHhcc--------HHHHHHHHHHHHhccCCcHHHHHHHhHHHhhhhccCCHHHHH
Confidence 455666677777777888877777776532 14455666666654 35567777777787763 23322 22
Q ss_pred HHHh---------cCcHHH-HHHHHhcCCHHHHHHHHHHHHHHcCCh--hhHHHHhhcCcHHHHHHHhccCCH-HHHHHH
Q 001833 497 QMAK---------ANYFKH-LLQRLSAGPESVKMRMATTLAEMELTD--HHKASLLEGNVLGPLLHLVSRGDI-QMKKVA 563 (1008)
Q Consensus 497 ~i~~---------~g~v~~-Lv~~L~~~~~~~~~~aa~~L~~Ls~~~--~~k~~i~~~g~i~~Lv~lL~~~~~-~~~~~A 563 (1008)
.... ...|.. ++..|....+.....|+.+++.++.-+ .+.. .+.++.|+....++.+ .+|+.+
T Consensus 75 ~~~qRWl~l~~e~reqVK~~il~tL~~~ep~~~s~Aaq~va~IA~~ElP~n~w----p~li~~lv~nv~~~~~~~~k~~s 150 (859)
T KOG1241|consen 75 QYQQRWLQLPAEIREQVKNNILRTLGSPEPRRPSSAAQCVAAIACIELPQNQW----PELIVTLVSNVGEEQASMVKESS 150 (859)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHcCCCCCCccchHHHHHHHHHHhhCchhhC----HHHHHHHHHhcccccchHHHHHH
Confidence 2211 011111 223344333344444444554443322 1111 2445555555555444 589999
Q ss_pred HHHHHHhhCCCchhHHHHh-cCChHHHHHHhcccCCCCcchHHHHHHHHHHHhccccccccCCcccccccchhHHHHH--
Q 001833 564 VKALRNLSSVPQNGLQMIK-EGAVGPLVDLLLHHSSSSSSLREETATAIMHLAVSTMYQESSQTPVTLLESDKEIFML-- 640 (1008)
Q Consensus 564 ~~aL~~L~~~~~~~~~i~~-~G~v~~Ll~ll~~~~~~~~~~~~~a~~~L~nLa~~~~~~~~~~~~~~~l~~~~~i~~L-- 640 (1008)
+.+|+.+|.+-.-....-. ..++-.++.-+...... ..++-.|..+|.|--+-... -+..+.-..-+
T Consensus 151 lealGyice~i~pevl~~~sN~iLtaIv~gmrk~e~s-~~vRLaa~~aL~nsLef~~~---------nF~~E~ern~iMq 220 (859)
T KOG1241|consen 151 LEALGYICEDIDPEVLEQQSNDILTAIVQGMRKEETS-AAVRLAALNALYNSLEFTKA---------NFNNEMERNYIMQ 220 (859)
T ss_pred HHHHHHHHccCCHHHHHHHHhHHHHHHHhhccccCCc-hhHHHHHHHHHHHHHHHHHH---------hhccHhhhceeee
Confidence 9999999964322222112 23566666666654433 67899999999986552110 01111111111
Q ss_pred --HHhhccCChHHHHHHHHHHHHhccCCChhhHHHHhhhcCChHHHHHhhccCChhHHHHHHHHHHHhccCCChhHH---
Q 001833 641 --FSLINLTGPNVQQRILQTFNALCRSPSAGNIKTTLTQCSAIPVLVQLCEHDNENVRANAVKLFCCLVDDGDEAII--- 715 (1008)
Q Consensus 641 --~~ll~~~~~~v~~~al~aL~~L~~~~~~~~~~~~i~e~~~i~~Lv~ll~~~~~~v~~~a~~~L~~Ls~~~~~~~~--- 715 (1008)
...-++.+.+++..+..+|..+..- --.-...-|.+ .....-+.-+.++++++...++...++++.. ..+..
T Consensus 221 vvcEatq~~d~~i~~aa~~ClvkIm~L-yY~~m~~yM~~-alfaitl~amks~~deValQaiEFWsticeE-EiD~~~e~ 297 (859)
T KOG1241|consen 221 VVCEATQSPDEEIQVAAFQCLVKIMSL-YYEFMEPYMEQ-ALFAITLAAMKSDNDEVALQAIEFWSTICEE-EIDLAIEY 297 (859)
T ss_pred eeeecccCCcHHHHHHHHHHHHHHHHH-HHHHHHHHHHH-HHHHHHHHHHcCCcHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 1222367788999999999998752 01112222222 2344445566788999999999999988721 11100
Q ss_pred Hhhh---------------cccchHHHHHHhcCCC------CHHHHHHHHHHHhcCCCChhhHHHHHhcCCHHHHHHHhh
Q 001833 716 REHV---------------GQKCLETLVTIIQSSH------NEEEIASAMGILSKLPEVPQFTQWLLDAGALPIVLNFLK 774 (1008)
Q Consensus 716 ~~~~---------------~~~~i~~Lv~lL~~~~------~~~v~~~a~~~L~nL~~~~~~~~~l~~~g~l~~Lv~lL~ 774 (1008)
.+.. -.+.+|.|+++|...+ +.....+|..+|.-++. .+....+++++.+++
T Consensus 298 ~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~-------~~~D~Iv~~Vl~Fie 370 (859)
T KOG1241|consen 298 GEAVDQGLPPSSKYFARQALQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQ-------CVGDDIVPHVLPFIE 370 (859)
T ss_pred HHHhhcCCCchhhHHHHHHHhHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHH-------HhcccchhhhHHHHH
Confidence 0111 1257788999887631 11233344444433322 122334555555555
Q ss_pred CCCCCCCchhhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHHHhhcCChHHHHHHHHHHhhhhhcCCCCCCCCCCC
Q 001833 775 NGRQNDPNRFQVVENAVGALRRFTAPTNLEWQKRAAEAGVIPKLVQLLEYGTTLTKEHAATSLARFSKNSLGLSRPIPKR 854 (1008)
Q Consensus 775 ~~~~~~~~~~~v~~~a~~aL~~L~~~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~v~~~Aa~aL~nLs~~~~~l~~~~~~~ 854 (1008)
....+ ++..-++.++.+++.+..+.+++.. .-.-.+++|.++.++.+++.-++..++|+++.++...+.-+
T Consensus 371 e~i~~--pdwr~reaavmAFGSIl~gp~~~~L-t~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~------ 441 (859)
T KOG1241|consen 371 ENIQN--PDWRNREAAVMAFGSILEGPEPDKL-TPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEAI------ 441 (859)
T ss_pred HhcCC--cchhhhhHHHHHHHhhhcCCchhhh-hHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhchhhc------
Confidence 32111 6778899999999999987444444 33457889999999998888999999999999985432100
Q ss_pred CcccccCCCCCCcccccCcccCcccchhHhhccchHHHHHhhcCCChhhhHHHHHHHHhhh
Q 001833 855 KGFWCFSPPPEIGCQVHGGLCGIESSFCLLEANAVRPLVRVLEDPDHGACEASLDALVTLI 915 (1008)
Q Consensus 855 ~g~~~~~~~~~~~c~vh~~~c~~~~~~~l~~~g~i~~Lv~lL~~~d~~v~~~al~aL~~L~ 915 (1008)
.| . ....+.+..|+.-|. +.|.+..+++||+.+|+
T Consensus 442 ---------------~n--------~--~~l~~~l~~l~~gL~-DePrva~N~CWAf~~La 476 (859)
T KOG1241|consen 442 ---------------IN--------Q--ELLQSKLSALLEGLN-DEPRVASNVCWAFISLA 476 (859)
T ss_pred ---------------cc--------H--hhhhHHHHHHHHHhh-hCchHHHHHHHHHHHHH
Confidence 00 0 011223444444444 46889999999999998
No 52
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=98.77 E-value=1.2e-06 Score=94.31 Aligned_cols=304 Identities=14% Similarity=0.097 Sum_probs=213.1
Q ss_pred HHHHHHhhccCChHHHHHHHHHHHHhccCCChhhHH-HHhhhcCChHHHHHhhcc-CChhHHHHHHHHHHHhccCCChhH
Q 001833 637 IFMLFSLINLTGPNVQQRILQTFNALCRSPSAGNIK-TTLTQCSAIPVLVQLCEH-DNENVRANAVKLFCCLVDDGDEAI 714 (1008)
Q Consensus 637 i~~L~~ll~~~~~~v~~~al~aL~~L~~~~~~~~~~-~~i~e~~~i~~Lv~ll~~-~~~~v~~~a~~~L~~Ls~~~~~~~ 714 (1008)
...++.++...++-+.+...+++..++......... ..-. ....|...+.+ .+++...-++++|..+.. -++.
T Consensus 116 ~~~fl~ll~r~d~~iv~~~~~Ils~la~~g~~~~~~~e~~~---~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~--~~ey 190 (442)
T KOG2759|consen 116 WLSFLNLLNRQDTFIVEMSFRILSKLACFGNCKMELSELDV---YKGFLKEQLQSSTNNDYIQFAARCLQTLLR--VDEY 190 (442)
T ss_pred hHHHHHHHhcCChHHHHHHHHHHHHHHHhccccccchHHHH---HHHHHHHHHhccCCCchHHHHHHHHHHHhc--Ccch
Confidence 567888999999999988888888887653211100 0000 12344455555 467778888889988862 3455
Q ss_pred HHhhhcccchHHHHHHh-cCCCCHHHHHHHHHHHhcCCCChhhHHHHHhcCCHHHHHHHhhCCCCCCCchhhHHHHHHHH
Q 001833 715 IREHVGQKCLETLVTII-QSSHNEEEIASAMGILSKLPEVPQFTQWLLDAGALPIVLNFLKNGRQNDPNRFQVVENAVGA 793 (1008)
Q Consensus 715 ~~~~~~~~~i~~Lv~lL-~~~~~~~v~~~a~~~L~nL~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~v~~~a~~a 793 (1008)
...++...++..++..+ .+..+...+...+-+++-|..++...+.+...+.++.|..+++++ ..+.|.+-++.+
T Consensus 191 R~~~v~adg~~~l~~~l~s~~~~~QlQYqsifciWlLtFn~~~ae~~~~~~li~~L~~Ivk~~-----~KEKV~Rivlai 265 (442)
T KOG2759|consen 191 RYAFVIADGVSLLIRILASTKCGFQLQYQSIFCIWLLTFNPHAAEKLKRFDLIQDLSDIVKES-----TKEKVTRIVLAI 265 (442)
T ss_pred hheeeecCcchhhHHHHhccCcchhHHHHHHHHHHHhhcCHHHHHHHhhccHHHHHHHHHHHH-----HHHHHHHHHHHH
Confidence 66667788899999988 444567889999999999999999999998899999999999984 567888899999
Q ss_pred HHHhcCCCCH------HHHHHHHHcCChHHHHHHhhc--CChHHHHHHHHHHhhhhhcCCCCCCCC----CCCCcccccC
Q 001833 794 LRRFTAPTNL------EWQKRAAEAGVIPKLVQLLEY--GTTLTKEHAATSLARFSKNSLGLSRPI----PKRKGFWCFS 861 (1008)
Q Consensus 794 L~~L~~~~~~------~~~~~l~~~g~l~~Lv~lL~~--~~~~v~~~Aa~aL~nLs~~~~~l~~~~----~~~~g~~~~~ 861 (1008)
+.|+... .+ +....+...++.+.+-.+-.. +|+++....-..-..|..+...++..- .-..|
T Consensus 266 ~~Nll~k-~~~~~~~k~~~~~mv~~~v~k~l~~L~~rkysDEDL~~di~~L~e~L~~svq~LsSFDeY~sEl~sG----- 339 (442)
T KOG2759|consen 266 FRNLLDK-GPDRETKKDIASQMVLCKVLKTLQSLEERKYSDEDLVDDIEFLTEKLKNSVQDLSSFDEYKSELRSG----- 339 (442)
T ss_pred HHHHhcc-CchhhHHHHHHHHHHhcCchHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhC-----
Confidence 9999985 32 444566667766665444443 466776665555555554443332210 00111
Q ss_pred CCCCCcccccCcccC-cccchhHhhc--cchHHHHHhhc-CCChhhhHHHHHHHHhhhcccccchhhHHHHhcCchHHHH
Q 001833 862 PPPEIGCQVHGGLCG-IESSFCLLEA--NAVRPLVRVLE-DPDHGACEASLDALVTLIEGERLQNGSKVLEDANAIDRMV 937 (1008)
Q Consensus 862 ~~~~~~c~vh~~~c~-~~~~~~l~~~--g~i~~Lv~lL~-~~d~~v~~~al~aL~~L~~~~~~~~~~~~i~~~~~i~~l~ 937 (1008)
.-.=.|+|...-. .+++.++-+. ..++.|+.+|+ +.||.+..-|+.=+..++ ..-.++...+.+-||-+.++
T Consensus 340 --~L~WSP~Hk~e~FW~eNa~rlnennyellkiL~~lLe~s~Dp~iL~VAc~DIge~V--r~yP~gk~vv~k~ggKe~vM 415 (442)
T KOG2759|consen 340 --RLEWSPVHKSEKFWRENADRLNENNYELLKILIKLLETSNDPIILCVACHDIGEYV--RHYPEGKAVVEKYGGKERVM 415 (442)
T ss_pred --CcCCCccccccchHHHhHHHHhhccHHHHHHHHHHHhcCCCCceeehhhhhHHHHH--HhCchHhHHHHHhchHHHHH
Confidence 1123355532221 3345555553 57899999998 456888888888899998 12238899999999999999
Q ss_pred HHhcCCChHHHHHHHHHHHHHhc
Q 001833 938 RFLSSPSPKLQEKALDSVERIFR 960 (1008)
Q Consensus 938 ~ll~~~~~~l~~~a~~~L~~l~~ 960 (1008)
++++++|++|+..|+.++.++..
T Consensus 416 ~Llnh~d~~Vry~ALlavQ~lm~ 438 (442)
T KOG2759|consen 416 NLLNHEDPEVRYHALLAVQKLMV 438 (442)
T ss_pred HHhcCCCchHHHHHHHHHHHHHh
Confidence 99999999999999999988754
No 53
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=98.72 E-value=7.3e-09 Score=100.97 Aligned_cols=59 Identities=29% Similarity=0.425 Sum_probs=52.7
Q ss_pred CCccccccccccccCCceeccCcccccHHHHHHHHhc---------------CCCCCCCcCccCCCCCCccCHh
Q 001833 262 PLQSFYCPITRDVMVDPVETSSGQTFERSAIEKWFSD---------------GNNLCPLTMTVLDTSILRPNKT 320 (1008)
Q Consensus 262 ~~~~~~cpi~~~~m~dpv~~~~g~t~~r~~i~~w~~~---------------~~~~cp~~~~~l~~~~l~pN~~ 320 (1008)
..++|.||||++.++|||++.|||.||+.||.+|+.. +...||.|+.+++...++|.+.
T Consensus 15 ~~~~~~CpICld~~~dPVvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~~LvPiyg 88 (193)
T PLN03208 15 SGGDFDCNICLDQVRDPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEATLVPIYG 88 (193)
T ss_pred CCCccCCccCCCcCCCcEEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChhcEEEeec
Confidence 4478999999999999999999999999999999852 2457999999999999999883
No 54
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.69 E-value=1.6e-05 Score=91.57 Aligned_cols=298 Identities=17% Similarity=0.226 Sum_probs=222.7
Q ss_pred CcHHHHHHHhccC-CHHHHHHHHHHHHHhhCCCchhHHHHhcCChHHHHHHhcccCCCCcchHHHHHHHHHHHhcccccc
Q 001833 543 NVLGPLLHLVSRG-DIQMKKVAVKALRNLSSVPQNGLQMIKEGAVGPLVDLLLHHSSSSSSLREETATAIMHLAVSTMYQ 621 (1008)
Q Consensus 543 g~i~~Lv~lL~~~-~~~~~~~A~~aL~~L~~~~~~~~~i~~~G~v~~Ll~ll~~~~~~~~~~~~~a~~~L~nLa~~~~~~ 621 (1008)
..|+.|++-+.+. -+.-|+.|+.+|..+++ ..|.. +-+.++++|+..|+.+..+ +++...++.++.++...++..
T Consensus 22 ETI~kLcDRvessTL~eDRR~A~rgLKa~sr--kYR~~-Vga~Gmk~li~vL~~D~~D-~E~ik~~LdTl~il~~~dd~~ 97 (970)
T KOG0946|consen 22 ETIEKLCDRVESSTLLEDRRDAVRGLKAFSR--KYREE-VGAQGMKPLIQVLQRDYMD-PEIIKYALDTLLILTSHDDSP 97 (970)
T ss_pred hHHHHHHHHHhhccchhhHHHHHHHHHHHHH--HHHHH-HHHcccHHHHHHHhhccCC-HHHHHHHHHHHHHHHhcCcch
Confidence 4577788777655 35779999999999985 23333 4455789999999876655 789999999999999876422
Q ss_pred cc-------CC----cccccccchhHHHHHHHhhccCChHHHHHHHHHHHHhccCCChhhHHHHhhhc-CChHHHHHhhc
Q 001833 622 ES-------SQ----TPVTLLESDKEIFMLFSLINLTGPNVQQRILQTFNALCRSPSAGNIKTTLTQC-SAIPVLVQLCE 689 (1008)
Q Consensus 622 ~~-------~~----~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~aL~~L~~~~~~~~~~~~i~e~-~~i~~Lv~ll~ 689 (1008)
.. ++ ..-.++.+.+.|..++..+...+-.+|..++..|.++.++. +.++++.+... -++..|+.+++
T Consensus 98 ~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r-~~e~q~~ll~~P~gIS~lmdlL~ 176 (970)
T KOG0946|consen 98 EVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCR-PTELQDALLVSPMGISKLMDLLR 176 (970)
T ss_pred hhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcC-CHHHHHHHHHCchhHHHHHHHHh
Confidence 11 11 12246678899999999999999999999999999998874 56677777664 46999999999
Q ss_pred cCChhHHHHHHHHHHHhccCCChhHHHhhhcccchHHHHHHhcCCC--C-HHHHHHHHHHHhcCCC-ChhhHHHHHhcCC
Q 001833 690 HDNENVRANAVKLFCCLVDDGDEAIIREHVGQKCLETLVTIIQSSH--N-EEEIASAMGILSKLPE-VPQFTQWLLDAGA 765 (1008)
Q Consensus 690 ~~~~~v~~~a~~~L~~Ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~--~-~~v~~~a~~~L~nL~~-~~~~~~~l~~~g~ 765 (1008)
+..+.+|-.++..|..|+ .+++...+.+.=..+..+|..++.... + .-+...++..|.||-. +..+.....+.+.
T Consensus 177 DsrE~IRNe~iLlL~eL~-k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~~ 255 (970)
T KOG0946|consen 177 DSREPIRNEAILLLSELV-KDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFREGSY 255 (970)
T ss_pred hhhhhhchhHHHHHHHHH-ccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhcccc
Confidence 999999999999999998 433333333333478899999987653 2 2467889999999988 7777777788889
Q ss_pred HHHHHHHhhCCCCCC-------CchhhHHHHHHHHHHHhcCCCCHH-----HHHHHHHcCChHHHHHHhhcC--ChHHHH
Q 001833 766 LPIVLNFLKNGRQND-------PNRFQVVENAVGALRRFTAPTNLE-----WQKRAAEAGVIPKLVQLLEYG--TTLTKE 831 (1008)
Q Consensus 766 l~~Lv~lL~~~~~~~-------~~~~~v~~~a~~aL~~L~~~~~~~-----~~~~l~~~g~l~~Lv~lL~~~--~~~v~~ 831 (1008)
+|.|.++|......+ .....-.-.++.++..++.++++. .+..+...+++..|..++.++ ..+++.
T Consensus 256 i~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~il~~~~vp~dIlt 335 (970)
T KOG0946|consen 256 IPRLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVSSHLLDVLCTILMHPGVPADILT 335 (970)
T ss_pred HHHHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHHHHHHHHcCCCCcHhHHH
Confidence 999999998632211 011223346777778887764332 456788899999999999876 338999
Q ss_pred HHHHHHhhhhhcCCC
Q 001833 832 HAATSLARFSKNSLG 846 (1008)
Q Consensus 832 ~Aa~aL~nLs~~~~~ 846 (1008)
.+..++++..+.+..
T Consensus 336 esiitvAevVRgn~~ 350 (970)
T KOG0946|consen 336 ESIITVAEVVRGNAR 350 (970)
T ss_pred HHHHHHHHHHHhchH
Confidence 999999998876543
No 55
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=98.69 E-value=1.1e-05 Score=91.78 Aligned_cols=483 Identities=13% Similarity=0.159 Sum_probs=275.1
Q ss_pred HcCCCHHHHHHHHHHHHHhccCChhhHHHhhccCCcHHHHHHHhccChh-----H---HHHHHHHHHHhccCchhhHHhh
Q 001833 386 LGSKNRDVRNRALIILHILVKDSNDTKERLANGDDAVESIVRSLGRRIE-----E---RKLAVALLLELSTCNTLRDQIG 457 (1008)
Q Consensus 386 L~s~~~~~~~~Al~~L~~Ls~~~~~~k~~i~~~~g~i~~Lv~~L~~~~~-----~---~~~A~~~L~~Ls~~~~~~~~i~ 457 (1008)
|......+|..++.+|..|+.....-. .+....+++.|-.+.. . --.|+..|..|. ++++...+.
T Consensus 562 l~De~qkVR~itAlalsalaeaa~Pyg------ie~fDsVlkpLwkgir~hrgk~laafLkAigyliplm-d~eya~yyT 634 (1172)
T KOG0213|consen 562 LKDEQQKVRTITALALSALAEAATPYG------IEQFDSVLKPLWKGIRQHRGKELAAFLKAIGYLIPLM-DAEYASYYT 634 (1172)
T ss_pred hcccchhhhhHHHHHHHHHHHhcCCcc------hHHHHHHHHHHHHHHHHccChHHHHHHHHHhhccccc-cHHHHHHhH
Confidence 344566788777777777764331111 2334444444432211 1 112222232222 344555544
Q ss_pred cccchHHHHHHHhcCCChHHHHHHHHHHHhhcCCcccHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHHcCChhhHH
Q 001833 458 DVQGCILLLVTMASSDDNQASRDAQELLENLSFSDDNVVQMAKANYFKHLLQRLSAGPESVKMRMATTLAEMELTDHHKA 537 (1008)
Q Consensus 458 ~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~~~n~~~i~~~g~v~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~~~~k~ 537 (1008)
+ .++..+..-..++|.+.++..+.++...|..+..-........++.+...........-..--..|... .-+...
T Consensus 635 r--evmlil~rEf~sPDeemkkivLKVv~qcc~t~Gv~~~y~r~dilp~ff~~fw~rrmA~drr~ykqlv~t--tv~ia~ 710 (1172)
T KOG0213|consen 635 R--EVMLILIREFGSPDEEMKKIVLKVVKQCCATDGVEPAYIRFDILPEFFFSFWGRRMALDRRNYKQLVDT--TVEIAA 710 (1172)
T ss_pred H--HHHHHHHHhhCCChHHHHHHHHHHHHHHhcccCCCHHHHhhhhhHHHHhhhhhhhhhccccchhhHHHH--HHHHHH
Confidence 2 345555666668899999999999999998888888888888888877654432111100000000000 011222
Q ss_pred HHhhcCcHHHHHHHhccCCHHHHHHHHHHHHHhhCCC--chhHHHHhcCChHHHHHHhcccCCCCcchHHHHHHHHHHHh
Q 001833 538 SLLEGNVLGPLLHLVSRGDIQMKKVAVKALRNLSSVP--QNGLQMIKEGAVGPLVDLLLHHSSSSSSLREETATAIMHLA 615 (1008)
Q Consensus 538 ~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~~--~~~~~i~~~G~v~~Ll~ll~~~~~~~~~~~~~a~~~L~nLa 615 (1008)
.++....|..++.=+.+..+..++-.+.++.++...- ..-..-.+.-.+..++..++..+.. ..+.-....+..|--
T Consensus 711 KvG~~~~v~R~v~~lkde~e~yrkm~~etv~ri~~~lg~~diderleE~lidgil~Afqeqtt~-d~vml~gfg~V~~~l 789 (1172)
T KOG0213|consen 711 KVGSDPIVSRVVLDLKDEPEQYRKMVAETVSRIVGRLGAADIDERLEERLIDGILYAFQEQTTE-DSVMLLGFGTVVNAL 789 (1172)
T ss_pred HhCchHHHHHHhhhhccccHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHhcccc-hhhhhhhHHHHHHHH
Confidence 4555556777777788888877777666666654311 1111122333456666666655433 223333333333322
Q ss_pred ccccccccCCcccccccchhHHHHHHHhhccCChHHHHHHHHHHHHhccCCChhhHHHHhhhcCChHHHHHhhccCChhH
Q 001833 616 VSTMYQESSQTPVTLLESDKEIFMLFSLINLTGPNVQQRILQTFNALCRSPSAGNIKTTLTQCSAIPVLVQLCEHDNENV 695 (1008)
Q Consensus 616 ~~~~~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~aL~~L~~~~~~~~~~~~i~e~~~i~~Lv~ll~~~~~~v 695 (1008)
...... . -.-.+..++..|++.++.++..++..+..++.--....-...+...| -.|.+.+....+++
T Consensus 790 g~r~kp--------y--lpqi~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lG--vvLyEylgeeypEv 857 (1172)
T KOG0213|consen 790 GGRVKP--------Y--LPQICSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLG--VVLYEYLGEEYPEV 857 (1172)
T ss_pred hhcccc--------c--hHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhh--HHHHHhcCcccHHH
Confidence 110000 0 12356678888999999999999999888865210110012232233 34667777888999
Q ss_pred HHHHHHHHHHhccCCChhHHHhhhcccchHHHHHHhcCCCCHHHHHHHHHHHhcCCC-Chh---hHHHHHhcCCHHHHHH
Q 001833 696 RANAVKLFCCLVDDGDEAIIREHVGQKCLETLVTIIQSSHNEEEIASAMGILSKLPE-VPQ---FTQWLLDAGALPIVLN 771 (1008)
Q Consensus 696 ~~~a~~~L~~Ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~v~~~a~~~L~nL~~-~~~---~~~~l~~~g~l~~Lv~ 771 (1008)
.-..+.++..+.....-...... -.+.+|.|.-+|++ ....+++.+...++.++. .++ .+.++. +.--|+.
T Consensus 858 LgsILgAikaI~nvigm~km~pP-i~dllPrltPILkn-rheKVqen~IdLvg~IadrgpE~v~aREWMR---IcfeLle 932 (1172)
T KOG0213|consen 858 LGSILGAIKAIVNVIGMTKMTPP-IKDLLPRLTPILKN-RHEKVQENCIDLVGTIADRGPEYVSAREWMR---ICFELLE 932 (1172)
T ss_pred HHHHHHHHHHHHHhccccccCCC-hhhhcccchHhhhh-hHHHHHHHHHHHHHHHHhcCcccCCHHHHHH---HHHHHHH
Confidence 88877777776521110011111 23789999999998 556788888888888876 333 234432 3345788
Q ss_pred HhhCCCCCCCchhhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHHHhhcC-ChHHHHHHHHHHh--hhhhcCCCCC
Q 001833 772 FLKNGRQNDPNRFQVVENAVGALRRFTAPTNLEWQKRAAEAGVIPKLVQLLEYG-TTLTKEHAATSLA--RFSKNSLGLS 848 (1008)
Q Consensus 772 lL~~~~~~~~~~~~v~~~a~~aL~~L~~~~~~~~~~~l~~~g~l~~Lv~lL~~~-~~~v~~~Aa~aL~--nLs~~~~~l~ 848 (1008)
+|+. .+..++.+|..+++-++. .+ |--.+|..||..- ..+-+...|.+++ -.+.
T Consensus 933 lLka------hkK~iRRaa~nTfG~Iak--------aI---GPqdVLatLlnnLkvqeRq~RvcTtvaIaIVaE------ 989 (1172)
T KOG0213|consen 933 LLKA------HKKEIRRAAVNTFGYIAK--------AI---GPQDVLATLLNNLKVQERQNRVCTTVAIAIVAE------ 989 (1172)
T ss_pred HHHH------HHHHHHHHHHhhhhHHHH--------hc---CHHHHHHHHHhcchHHHHHhchhhhhhhhhhhh------
Confidence 8888 788999999999998876 22 2233344444431 2233333333332 2221
Q ss_pred CCCCCCCcccccCCCCCCcccccCcccCcccchhHhhccchHHHHHhhcCCChhhhHHHHHHHHhhh--cccccchhhHH
Q 001833 849 RPIPKRKGFWCFSPPPEIGCQVHGGLCGIESSFCLLEANAVRPLVRVLEDPDHGACEASLDALVTLI--EGERLQNGSKV 926 (1008)
Q Consensus 849 ~~~~~~~g~~~~~~~~~~~c~vh~~~c~~~~~~~l~~~g~i~~Lv~lL~~~d~~v~~~al~aL~~L~--~~~~~~~~~~~ 926 (1008)
. | . -..+++.|+.--.-++..|+...+.+|+-+. .++ .+.++
T Consensus 990 -----~-------------c-------~--------pFtVLPalmneYrtPe~nVQnGVLkalsf~Feyige---mskdY 1033 (1172)
T KOG0213|consen 990 -----T-------------C-------G--------PFTVLPALMNEYRTPEANVQNGVLKALSFMFEYIGE---MSKDY 1033 (1172)
T ss_pred -----h-------------c-------C--------chhhhHHHHhhccCchhHHHHhHHHHHHHHHHHHHH---HhhhH
Confidence 0 0 0 1135777777777788889999999999998 332 33444
Q ss_pred HHhcCchHHHHHHhcCCChHHHHHHHHHHHHH
Q 001833 927 LEDANAIDRMVRFLSSPSPKLQEKALDSVERI 958 (1008)
Q Consensus 927 i~~~~~i~~l~~ll~~~~~~l~~~a~~~L~~l 958 (1008)
+... .+.|.+.+.+.+..-++.|..++..+
T Consensus 1034 iyav--~PlleDAlmDrD~vhRqta~~~I~Hl 1063 (1172)
T KOG0213|consen 1034 IYAV--TPLLEDALMDRDLVHRQTAMNVIKHL 1063 (1172)
T ss_pred HHHh--hHHHHHhhccccHHHHHHHHHHHHHH
Confidence 4332 56777778888888888888777655
No 56
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=98.68 E-value=6.5e-09 Score=81.34 Aligned_cols=44 Identities=39% Similarity=0.769 Sum_probs=32.3
Q ss_pred ccccccccccccCCceec-cCcccccHHHHHHHHh-cCCCCCCCcC
Q 001833 264 QSFYCPITRDVMVDPVET-SSGQTFERSAIEKWFS-DGNNLCPLTM 307 (1008)
Q Consensus 264 ~~~~cpi~~~~m~dpv~~-~~g~t~~r~~i~~w~~-~~~~~cp~~~ 307 (1008)
..|+||||+..|.|||.- .|||+|||++|.+|+. .+...||++|
T Consensus 10 ~~~~CPiT~~~~~~PV~s~~C~H~fek~aI~~~i~~~~~~~CPv~G 55 (57)
T PF11789_consen 10 ISLKCPITLQPFEDPVKSKKCGHTFEKEAILQYIQRNGSKRCPVAG 55 (57)
T ss_dssp --SB-TTTSSB-SSEEEESSS--EEEHHHHHHHCTTTS-EE-SCCC
T ss_pred eccCCCCcCChhhCCcCcCCCCCeecHHHHHHHHHhcCCCCCCCCC
Confidence 468999999999999996 7999999999999994 4567899976
No 57
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.62 E-value=3.4e-08 Score=108.75 Aligned_cols=70 Identities=30% Similarity=0.407 Sum_probs=63.1
Q ss_pred CccccccccccccCCceeccCcccccHHHHHHHHhcCCCCCCCcCccCCCCCCccCHhhHHHHHHHHHhcc
Q 001833 263 LQSFYCPITRDVMVDPVETSSGQTFERSAIEKWFSDGNNLCPLTMTVLDTSILRPNKTLRQSIEEWKDRNT 333 (1008)
Q Consensus 263 ~~~~~cpi~~~~m~dpv~~~~g~t~~r~~i~~w~~~~~~~cp~~~~~l~~~~l~pN~~l~~~I~~w~~~~~ 333 (1008)
...|.||||+++|.+||+++|||+||+.||.+|+.. ...||.|+.+.....+.+|+.|.++|+.|.....
T Consensus 24 e~~l~C~IC~d~~~~PvitpCgH~FCs~CI~~~l~~-~~~CP~Cr~~~~~~~Lr~N~~L~~iVe~~~~~R~ 93 (397)
T TIGR00599 24 DTSLRCHICKDFFDVPVLTSCSHTFCSLCIRRCLSN-QPKCPLCRAEDQESKLRSNWLVSEIVESFKNLRP 93 (397)
T ss_pred ccccCCCcCchhhhCccCCCCCCchhHHHHHHHHhC-CCCCCCCCCccccccCccchHHHHHHHHHHHhhH
Confidence 468999999999999999999999999999999975 3479999999988899999999999999975443
No 58
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=98.57 E-value=8.1e-06 Score=88.19 Aligned_cols=323 Identities=16% Similarity=0.173 Sum_probs=222.6
Q ss_pred HHHHHHHhcC-CChHHHHHHHHHHHhhcCCcccHHHHHh-------cCcHHHHHHHHhcCCHHHHHHHHHHHHHHcCChh
Q 001833 463 ILLLVTMASS-DDNQASRDAQELLENLSFSDDNVVQMAK-------ANYFKHLLQRLSAGPESVKMRMATTLAEMELTDH 534 (1008)
Q Consensus 463 i~~Lv~lL~~-~~~~~~~~a~~aL~~Ls~~~~n~~~i~~-------~g~v~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~~~ 534 (1008)
+..++.+++. ..++....++..+..+-..+..+..+.. .-.-.+.+.+|..++.-+...+.+++..++....
T Consensus 67 v~~fi~LlS~~~kdd~v~yvL~li~DmLs~d~sr~~lf~~~a~~~k~~~~~~fl~ll~r~d~~iv~~~~~Ils~la~~g~ 146 (442)
T KOG2759|consen 67 VKTFINLLSHIDKDDTVQYVLTLIDDMLSEDRSRVDLFHDYAHKLKRTEWLSFLNLLNRQDTFIVEMSFRILSKLACFGN 146 (442)
T ss_pred HHHHHHHhchhhhHHHHHHHHHHHHHHHhhCchHHHHHHHHHHhhhccchHHHHHHHhcCChHHHHHHHHHHHHHHHhcc
Confidence 3445555542 3344555555555555444444333322 2335667788888888888878899998876555
Q ss_pred hHHHHhhcCc-HHHHHHHhcc-CCHHHHHHHHHHHHHhhCCCchhHHHHhcCChHHHHHHhcccCCCCcchHHHHHHHHH
Q 001833 535 HKASLLEGNV-LGPLLHLVSR-GDIQMKKVAVKALRNLSSVPQNGLQMIKEGAVGPLVDLLLHHSSSSSSLREETATAIM 612 (1008)
Q Consensus 535 ~k~~i~~~g~-i~~Lv~lL~~-~~~~~~~~A~~aL~~L~~~~~~~~~i~~~G~v~~Ll~ll~~~~~~~~~~~~~a~~~L~ 612 (1008)
.+....+... ...|-..+.+ .++.....|+.+|..+...++.|..++.+.++..++..+.+...+ ..++.+...+++
T Consensus 147 ~~~~~~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~~eyR~~~v~adg~~~l~~~l~s~~~~-~QlQYqsifciW 225 (442)
T KOG2759|consen 147 CKMELSELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLRVDEYRYAFVIADGVSLLIRILASTKCG-FQLQYQSIFCIW 225 (442)
T ss_pred ccccchHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhcCcchhheeeecCcchhhHHHHhccCcc-hhHHHHHHHHHH
Confidence 4432322222 2334455655 567788899999999999999999999999999999999633333 689999999999
Q ss_pred HHhccccccccCCcccccccchhHHHHHHHhhcc-CChHHHHHHHHHHHHhccCCCh----hhHHHHhhhcCChHHHHHh
Q 001833 613 HLAVSTMYQESSQTPVTLLESDKEIFMLFSLINL-TGPNVQQRILQTFNALCRSPSA----GNIKTTLTQCSAIPVLVQL 687 (1008)
Q Consensus 613 nLa~~~~~~~~~~~~~~~l~~~~~i~~L~~ll~~-~~~~v~~~al~aL~~L~~~~~~----~~~~~~i~e~~~i~~Lv~l 687 (1008)
.|+.++...+ .+..-+.++.|..+++. ..+.+.+-++.++.|++..+.. ......+..++..+.+-.|
T Consensus 226 lLtFn~~~ae-------~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~mv~~~v~k~l~~L 298 (442)
T KOG2759|consen 226 LLTFNPHAAE-------KLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDKGPDRETKKDIASQMVLCKVLKTLQSL 298 (442)
T ss_pred HhhcCHHHHH-------HHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCchHHHHHH
Confidence 9998775544 34667788999999884 4677888999999999986532 2444567777755555555
Q ss_pred hccC--ChhHHHHHHHHHHH-------hcc--------------CCCh--------hHHHhhhc--ccchHHHHHHhcCC
Q 001833 688 CEHD--NENVRANAVKLFCC-------LVD--------------DGDE--------AIIREHVG--QKCLETLVTIIQSS 734 (1008)
Q Consensus 688 l~~~--~~~v~~~a~~~L~~-------Ls~--------------~~~~--------~~~~~~~~--~~~i~~Lv~lL~~~ 734 (1008)
.+.. |+++....-.+-.. |++ +.+. ++...+-+ ...+..|+.+|..+
T Consensus 299 ~~rkysDEDL~~di~~L~e~L~~svq~LsSFDeY~sEl~sG~L~WSP~Hk~e~FW~eNa~rlnennyellkiL~~lLe~s 378 (442)
T KOG2759|consen 299 EERKYSDEDLVDDIEFLTEKLKNSVQDLSSFDEYKSELRSGRLEWSPVHKSEKFWRENADRLNENNYELLKILIKLLETS 378 (442)
T ss_pred HhcCCCcHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhCCcCCCccccccchHHHhHHHHhhccHHHHHHHHHHHhcC
Confidence 4443 55555443332222 221 0110 12222212 24788999999998
Q ss_pred CCHHHHHHHHHHHhcCCC-ChhhHHHHHhcCCHHHHHHHhhCCCCCCCchhhHHHHHHHHHHHhcC
Q 001833 735 HNEEEIASAMGILSKLPE-VPQFTQWLLDAGALPIVLNFLKNGRQNDPNRFQVVENAVGALRRFTA 799 (1008)
Q Consensus 735 ~~~~v~~~a~~~L~nL~~-~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~v~~~a~~aL~~L~~ 799 (1008)
.++-+..-|+.=++.... .|+.+..+.+.|+=..+.+++.+ ++++++.+|+.|+..+..
T Consensus 379 ~Dp~iL~VAc~DIge~Vr~yP~gk~vv~k~ggKe~vM~Llnh------~d~~Vry~ALlavQ~lm~ 438 (442)
T KOG2759|consen 379 NDPIILCVACHDIGEYVRHYPEGKAVVEKYGGKERVMNLLNH------EDPEVRYHALLAVQKLMV 438 (442)
T ss_pred CCCceeehhhhhHHHHHHhCchHhHHHHHhchHHHHHHHhcC------CCchHHHHHHHHHHHHHh
Confidence 777777778888888888 99999999999999999999999 789999999999988765
No 59
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=98.55 E-value=0.0054 Score=72.68 Aligned_cols=494 Identities=14% Similarity=0.136 Sum_probs=264.4
Q ss_pred chHHHHHHHcC--CCHHHHHHHHHHHHHhcc-CChhhHHHhhccCCcHHHHHHHhccC-hhHHHHHHHHHHHhccC--c-
Q 001833 378 YIPKLIYLLGS--KNRDVRNRALIILHILVK-DSNDTKERLANGDDAVESIVRSLGRR-IEERKLAVALLLELSTC--N- 450 (1008)
Q Consensus 378 ~i~~L~~lL~s--~~~~~~~~Al~~L~~Ls~-~~~~~k~~i~~~~g~i~~Lv~~L~~~-~~~~~~A~~~L~~Ls~~--~- 450 (1008)
.+|-++..|.. .....+..++..|.++-. ++++.-.-.. .-..+.++...+.+ .....+|..+...+.+. +
T Consensus 477 lvpgI~~~l~DkSsss~~ki~~L~fl~~~L~s~~p~~fhp~~--~~Ls~~v~~aV~d~fyKisaEAL~v~~~lvkvirpl 554 (1233)
T KOG1824|consen 477 LVPGIIYSLNDKSSSSNLKIDALVFLYSALISHPPEVFHPHL--SALSPPVVAAVGDPFYKISAEALLVCQQLVKVIRPL 554 (1233)
T ss_pred cchhhhhhcCCccchHHHHHHHHHHHHHHHhcCChhhcccch--hhhhhHHHHHhcCchHhhhHHHHHHHHHHHHHhccc
Confidence 45666665643 345567788877766433 3322221111 12223333333332 23344455555544321 0
Q ss_pred ------hhhHHhhcccchHHHHHHHhc--CCChHHHHHHHHHHHhhcCCcccHHHHHhcCcHHHHHHHHhcCCHHHHHHH
Q 001833 451 ------TLRDQIGDVQGCILLLVTMAS--SDDNQASRDAQELLENLSFSDDNVVQMAKANYFKHLLQRLSAGPESVKMRM 522 (1008)
Q Consensus 451 ------~~~~~i~~~~g~i~~Lv~lL~--~~~~~~~~~a~~aL~~Ls~~~~n~~~i~~~g~v~~Lv~~L~~~~~~~~~~a 522 (1008)
+....+ ...+....+.|. ..|.++++.|+.++..+..+-......--...++.+++.|. ++-.|-.|
T Consensus 555 ~~~~~~d~~~~v---~~m~~~tl~rL~a~d~DqeVkeraIscmgq~i~~fgD~l~~eL~~~L~il~eRl~--nEiTRl~A 629 (1233)
T KOG1824|consen 555 QPPSSFDASPYV---KTMYDCTLQRLKATDSDQEVKERAISCMGQIIANFGDFLGNELPRTLPILLERLG--NEITRLTA 629 (1233)
T ss_pred CCCccCCCChhH---HHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHh--chhHHHHH
Confidence 011111 112333444454 35789999999988877432222222222344555666664 45678888
Q ss_pred HHHHHHHcCChh--hHHHHhhcCcHHHHHHHhccCCHHHHHHHHHHHHHhhCC--CchhHHHHhcCChHHHHHHhcccCC
Q 001833 523 ATTLAEMELTDH--HKASLLEGNVLGPLLHLVSRGDIQMKKVAVKALRNLSSV--PQNGLQMIKEGAVGPLVDLLLHHSS 598 (1008)
Q Consensus 523 a~~L~~Ls~~~~--~k~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~--~~~~~~i~~~G~v~~Ll~ll~~~~~ 598 (1008)
+.++..++...- ....++ ..+++.+...++......+...+.++-.|..+ ......+++. ++..+..++....
T Consensus 630 vkAlt~Ia~S~l~i~l~~~l-~~il~~l~~flrK~~r~lr~~~l~a~~~L~~~~~~~~~~~~~e~-vL~el~~Lisesd- 706 (1233)
T KOG1824|consen 630 VKALTLIAMSPLDIDLSPVL-TEILPELASFLRKNQRALRLATLTALDKLVKNYSDSIPAELLEA-VLVELPPLISESD- 706 (1233)
T ss_pred HHHHHHHHhccceeehhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHH-HHHHhhhhhhHHH-
Confidence 999988866552 222222 34678888888777667777777777777642 1222333332 3333444443322
Q ss_pred CCcchHHHHHHHHHHHhccccccccCCcccccccchhHHHHHHHhhccCChHHHHHHHHHHHHh----ccCCChhhHHHH
Q 001833 599 SSSSLREETATAIMHLAVSTMYQESSQTPVTLLESDKEIFMLFSLINLTGPNVQQRILQTFNAL----CRSPSAGNIKTT 674 (1008)
Q Consensus 599 ~~~~~~~~a~~~L~nLa~~~~~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~aL~~L----~~~~~~~~~~~~ 674 (1008)
..+.+.|...|..++....... .....-.++.++.++.+ |-++..++.++..+ ..+..+
T Consensus 707 --lhvt~~a~~~L~tl~~~~ps~l-------~~~~~~iL~~ii~ll~S--pllqg~al~~~l~~f~alV~t~~~------ 769 (1233)
T KOG1824|consen 707 --LHVTQLAVAFLTTLAIIQPSSL-------LKISNPILDEIIRLLRS--PLLQGGALSALLLFFQALVITKEP------ 769 (1233)
T ss_pred --HHHHHHHHHHHHHHHhcccHHH-------HHHhhhhHHHHHHHhhC--ccccchHHHHHHHHHHHHHhcCCC------
Confidence 4577888888888876443221 22234456777777754 44555444444333 222111
Q ss_pred hhhcCChHHHHHhhccCCh-----hHHHHH----HHHHHHhccCCChhHHHhhhcccchHHHHHHhc-CCCCHHHHHHHH
Q 001833 675 LTQCSAIPVLVQLCEHDNE-----NVRANA----VKLFCCLVDDGDEAIIREHVGQKCLETLVTIIQ-SSHNEEEIASAM 744 (1008)
Q Consensus 675 i~e~~~i~~Lv~ll~~~~~-----~v~~~a----~~~L~~Ls~~~~~~~~~~~~~~~~i~~Lv~lL~-~~~~~~v~~~a~ 744 (1008)
+.+ ...|+.++..+-. .+...| +.+.+.|+...... .......|++-+. ..++..++.-|+
T Consensus 770 --~l~-y~~l~s~lt~PV~~~~~~~l~kqa~~siA~cvA~Lt~~~~~~------s~s~a~kl~~~~~s~~s~~~ikvfa~ 840 (1233)
T KOG1824|consen 770 --DLD-YISLLSLLTAPVYEQVTDGLHKQAYYSIAKCVAALTCACPQK------SKSLATKLIQDLQSPKSSDSIKVFAL 840 (1233)
T ss_pred --Ccc-HHHHHHHHcCCcccccccchhHHHHHHHHHHHHHHHHhcccc------chhHHHHHHHHHhCCCCchhHHHHHH
Confidence 112 5566677765421 222233 33333333111110 1123344444444 335667888888
Q ss_pred HHHhcCCCChhhHHHHHhcCCHHHHHHHhhCCCCCCCchhhHHHHHHHHHHHhcCCCCHHHHHHHHH-------------
Q 001833 745 GILSKLPEVPQFTQWLLDAGALPIVLNFLKNGRQNDPNRFQVVENAVGALRRFTAPTNLEWQKRAAE------------- 811 (1008)
Q Consensus 745 ~~L~nL~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~v~~~a~~aL~~L~~~~~~~~~~~l~~------------- 811 (1008)
-.||.+....... ...+.-..++..+.+ ++++++.+|..||++++.+.-+.+...+.+
T Consensus 841 LslGElgr~~~~s---~~~e~~~~iieaf~s------p~edvksAAs~ALGsl~vgnl~~yLpfil~qi~sqpk~QyLLL 911 (1233)
T KOG1824|consen 841 LSLGELGRRKDLS---PQNELKDTIIEAFNS------PSEDVKSAASYALGSLAVGNLPKYLPFILEQIESQPKRQYLLL 911 (1233)
T ss_pred hhhhhhccCCCCC---cchhhHHHHHHHcCC------ChHHHHHHHHHHhhhhhcCchHhHHHHHHHHHhcchHhHHHHH
Confidence 8999987611110 122334577888888 789999999999999999744443322211
Q ss_pred ---------------cCChHHHHHHhh----cCChHHHHHHHHHHhhhhhcCCCCCCCCCCCCcccccCCCCCCcccccC
Q 001833 812 ---------------AGVIPKLVQLLE----YGTTLTKEHAATSLARFSKNSLGLSRPIPKRKGFWCFSPPPEIGCQVHG 872 (1008)
Q Consensus 812 ---------------~g~l~~Lv~lL~----~~~~~v~~~Aa~aL~nLs~~~~~l~~~~~~~~g~~~~~~~~~~~c~vh~ 872 (1008)
...++.++.+|. .....+|.-.+.||+.+....
T Consensus 912 hSlkevi~~~svd~~~~~v~~IW~lL~k~cE~~eegtR~vvAECLGkL~l~e---------------------------- 963 (1233)
T KOG1824|consen 912 HSLKEVIVSASVDGLKPYVEKIWALLFKHCECAEEGTRNVVAECLGKLVLIE---------------------------- 963 (1233)
T ss_pred HHHHHHHHHhccchhhhhHHHHHHHHHHhcccchhhhHHHHHHHhhhHHhCC----------------------------
Confidence 011122222222 112344444555555554211
Q ss_pred cccCcccchhHhhccchHHHHHhhcCCChhhhHHHHHHHHhhh-cccccchhhHHHHhcCchHHHHHHhcCCChHHHHHH
Q 001833 873 GLCGIESSFCLLEANAVRPLVRVLEDPDHGACEASLDALVTLI-EGERLQNGSKVLEDANAIDRMVRFLSSPSPKLQEKA 951 (1008)
Q Consensus 873 ~~c~~~~~~~l~~~g~i~~Lv~lL~~~d~~v~~~al~aL~~L~-~~~~~~~~~~~i~~~~~i~~l~~ll~~~~~~l~~~a 951 (1008)
-...++.|-..+.++++.++-.+..|+.-.+ +.. +.....+. +-+.....++++++..+++.|
T Consensus 964 ------------pesLlpkL~~~~~S~a~~~rs~vvsavKfsisd~p--~~id~~lk--~~ig~fl~~~~dpDl~Vrrva 1027 (1233)
T KOG1824|consen 964 ------------PESLLPKLKLLLRSEASNTRSSVVSAVKFSISDQP--QPIDPLLK--QQIGDFLKLLRDPDLEVRRVA 1027 (1233)
T ss_pred ------------hHHHHHHHHHHhcCCCcchhhhhhheeeeeecCCC--CccCHHHH--HHHHHHHHHHhCCchhHHHHH
Confidence 1235677777888888889988888877766 321 12222222 236677788899999999999
Q ss_pred HHHHHHHhc
Q 001833 952 LDSVERIFR 960 (1008)
Q Consensus 952 ~~~L~~l~~ 960 (1008)
+.++.....
T Consensus 1028 Lvv~nSaah 1036 (1233)
T KOG1824|consen 1028 LVVLNSAAH 1036 (1233)
T ss_pred HHHHHHHHc
Confidence 998876544
No 60
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=98.53 E-value=0.00067 Score=75.71 Aligned_cols=463 Identities=12% Similarity=0.093 Sum_probs=254.1
Q ss_pred hHHHHHHHHHHHHHHh------hchhhhhhHhhcCchHHHHHHHcCCCHHHHHHHHHHHHHhccCChhhHHHhhccCCcH
Q 001833 349 VEEVLHCLEQLQDLCQ------QRDQHREWVILENYIPKLIYLLGSKNRDVRNRALIILHILVKDSNDTKERLANGDDAV 422 (1008)
Q Consensus 349 ~~~~~~al~~L~~l~~------~~~~~r~~i~~~g~i~~L~~lL~s~~~~~~~~Al~~L~~Ls~~~~~~k~~i~~~~g~i 422 (1008)
...+..||..|.+-+. ..+.+|.. +.....+...+++.++|..|..+|..+..-.-..-..+++ ....
T Consensus 192 ~avRLaaL~aL~dsl~fv~~nf~~E~erNy-----~mqvvceatq~~d~e~q~aafgCl~kim~LyY~fm~~ymE-~aL~ 265 (858)
T COG5215 192 SAVRLAALKALMDSLMFVQGNFCYEEERNY-----FMQVVCEATQGNDEELQHAAFGCLNKIMMLYYKFMQSYME-NALA 265 (858)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcchhhhch-----hheeeehhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
Confidence 3445556666655221 22333433 2455667778889999999999998776544333334454 2222
Q ss_pred HHHHHHhccChh-HHHHHHHHHHHhc--------------cCch--hhHHhhcccchHHHHHHHhcC--CCh-----HHH
Q 001833 423 ESIVRSLGRRIE-ERKLAVALLLELS--------------TCNT--LRDQIGDVQGCILLLVTMASS--DDN-----QAS 478 (1008)
Q Consensus 423 ~~Lv~~L~~~~~-~~~~A~~~L~~Ls--------------~~~~--~~~~i~~~~g~i~~Lv~lL~~--~~~-----~~~ 478 (1008)
....+.+.+..+ +.-.|+..-..++ ..|. +--..+...+++|.|+++|.. +|+ ...
T Consensus 266 alt~~~mks~nd~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~s 345 (858)
T COG5215 266 ALTGRFMKSQNDEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLLEKQGEDYYGDDWNPS 345 (858)
T ss_pred HHHHHHhcCcchHHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHHHhcCCCccccccchh
Confidence 223334444333 2333333221111 1111 000111124678999999963 222 334
Q ss_pred HHHHHHHHhhcCCcccHHHHHhcCcHHHHHHH----HhcCCHHHHHHHHHHHHHHcCCh--hhHHHHhhcCcHHHHHHHh
Q 001833 479 RDAQELLENLSFSDDNVVQMAKANYFKHLLQR----LSAGPESVKMRMATTLAEMELTD--HHKASLLEGNVLGPLLHLV 552 (1008)
Q Consensus 479 ~~a~~aL~~Ls~~~~n~~~i~~~g~v~~Lv~~----L~~~~~~~~~~aa~~L~~Ls~~~--~~k~~i~~~g~i~~Lv~lL 552 (1008)
..|..+|.-.+... ..-.+.+++.. +++++-.-++.++.+++.+-..+ ..+..++ +.++|.+..++
T Consensus 346 maA~sCLqlfaq~~-------gd~i~~pVl~FvEqni~~~~w~nreaavmAfGSvm~gp~~~~lT~~V-~qalp~i~n~m 417 (858)
T COG5215 346 MAASSCLQLFAQLK-------GDKIMRPVLGFVEQNIRSESWANREAAVMAFGSVMHGPCEDCLTKIV-PQALPGIENEM 417 (858)
T ss_pred hhHHHHHHHHHHHh-------hhHhHHHHHHHHHHhccCchhhhHHHHHHHhhhhhcCccHHHHHhhH-HhhhHHHHHhc
Confidence 44555554333222 22233444433 56667778899999999984433 4444444 67889999999
Q ss_pred ccCCHHHHHHHHHHHHHhhCCCchhHHHH-hcCChHHHHHHhcccCCCCcchHHHHHHHHHHHhccccccccCCcccccc
Q 001833 553 SRGDIQMKKVAVKALRNLSSVPQNGLQMI-KEGAVGPLVDLLLHHSSSSSSLREETATAIMHLAVSTMYQESSQTPVTLL 631 (1008)
Q Consensus 553 ~~~~~~~~~~A~~aL~~L~~~~~~~~~i~-~~G~v~~Ll~ll~~~~~~~~~~~~~a~~~L~nLa~~~~~~~~~~~~~~~l 631 (1008)
.+....++..++||++.++.+ -..++ -.|-++..+.....+-.+.|....++.|...|++..-........ ..+
T Consensus 418 ~D~~l~vk~ttAwc~g~iad~---va~~i~p~~Hl~~~vsa~liGl~D~p~~~~ncsw~~~nlv~h~a~a~~~~~--S~l 492 (858)
T COG5215 418 SDSCLWVKSTTAWCFGAIADH---VAMIISPCGHLVLEVSASLIGLMDCPFRSINCSWRKENLVDHIAKAVREVE--SFL 492 (858)
T ss_pred ccceeehhhHHHHHHHHHHHH---HHHhcCccccccHHHHHHHhhhhccchHHhhhHHHHHhHHHhhhhhhcccc--chh
Confidence 988899999999999999862 22223 335555554444333323367888999999999873211110000 011
Q ss_pred c--chhHHHHHHHhhc--cCChHHHHHHHHHHHHhccCCChhhHHHHhhh---------cCChHHHHHhhccCC----hh
Q 001833 632 E--SDKEIFMLFSLIN--LTGPNVQQRILQTFNALCRSPSAGNIKTTLTQ---------CSAIPVLVQLCEHDN----EN 694 (1008)
Q Consensus 632 ~--~~~~i~~L~~ll~--~~~~~v~~~al~aL~~L~~~~~~~~~~~~i~e---------~~~i~~Lv~ll~~~~----~~ 694 (1008)
. ....+..|++.-+ ..+...|..+..+|..|.... +..+.+.+.. ...+..+-..+...| ++
T Consensus 493 ~~fY~ai~~~Lv~~t~~~~Ne~n~R~s~fsaLgtli~~~-~d~V~~~~a~~~~~~~~kl~~~isv~~q~l~~eD~~~~~e 571 (858)
T COG5215 493 AKFYLAILNALVKGTELALNESNLRVSLFSALGTLILIC-PDAVSDILAGFYDYTSKKLDECISVLGQILATEDQLLVEE 571 (858)
T ss_pred HHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhhc-chhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHH
Confidence 0 1223333443322 223345555444444443321 1111111110 011222222333222 46
Q ss_pred HHHHHHHHHHHhccCCChhHHHhhhcccchHHHHHHhcCCCCHHHHHHHHHHHhcCCCChhhHHHHHhcCCHHHHHHHhh
Q 001833 695 VRANAVKLFCCLVDDGDEAIIREHVGQKCLETLVTIIQSSHNEEEIASAMGILSKLPEVPQFTQWLLDAGALPIVLNFLK 774 (1008)
Q Consensus 695 v~~~a~~~L~~Ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~v~~~a~~~L~nL~~~~~~~~~l~~~g~l~~Lv~lL~ 774 (1008)
++.+-+..|..+.+...+ .+. ..+...+..++++|.+.....+...+..++++|+.+-+.+...+-..++|.+.+.|+
T Consensus 572 lqSN~~~vl~aiir~~~~-~ie-~v~D~lm~Lf~r~les~~~t~~~~dV~~aIsal~~sl~e~Fe~y~~~fiPyl~~aln 649 (858)
T COG5215 572 LQSNYIGVLEAIIRTRRR-DIE-DVEDQLMELFIRILESTKPTTAFGDVYTAISALSTSLEERFEQYASKFIPYLTRALN 649 (858)
T ss_pred HHHHHHHHHHHHHHhcCC-Ccc-cHHHHHHHHHHHHHhccCCchhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhc
Confidence 666777777666521111 111 112235677888888864445666778888888886666777777889999999997
Q ss_pred CCCCCCCchhhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHHHhhcCC--hHHHHHHHHHHhhhh
Q 001833 775 NGRQNDPNRFQVVENAVGALRRFTAPTNLEWQKRAAEAGVIPKLVQLLEYGT--TLTKEHAATSLARFS 841 (1008)
Q Consensus 775 ~~~~~~~~~~~v~~~a~~aL~~L~~~~~~~~~~~l~~~g~l~~Lv~lL~~~~--~~v~~~Aa~aL~nLs 841 (1008)
. .+..+.-.+++.++.|+...+.++... ....+..|++.|.+.. -+++-....+.+.++
T Consensus 650 ~------~d~~v~~~avglvgdlantl~~df~~y--~d~~ms~LvQ~lss~~~~R~lKPaiLSvFgDIA 710 (858)
T COG5215 650 C------TDRFVLNSAVGLVGDLANTLGTDFNIY--ADVLMSSLVQCLSSEATHRDLKPAILSVFGDIA 710 (858)
T ss_pred c------hhHHHHHHHHHHHHHHHHHhhhhHHHH--HHHHHHHHHHHhcChhhccccchHHHHHHHHHH
Confidence 7 678899999999999987544444322 2345778888887653 255555555555554
No 61
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.52 E-value=0.00046 Score=79.14 Aligned_cols=212 Identities=14% Similarity=0.177 Sum_probs=144.9
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHhhc-CCcccHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHHcCCh-hhHHHHhh
Q 001833 464 LLLVTMASSDDNQASRDAQELLENLS-FSDDNVVQMAKANYFKHLLQRLSAGPESVKMRMATTLAEMELTD-HHKASLLE 541 (1008)
Q Consensus 464 ~~Lv~lL~~~~~~~~~~a~~aL~~Ls-~~~~n~~~i~~~g~v~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~~-~~k~~i~~ 541 (1008)
+-++.+|++.-|-++..|+.+|+.+. .+++.. ...+|.|.+-|.++++.++..|..+++.|+.-+ .+..
T Consensus 147 ~Dv~tLL~sskpYvRKkAIl~lykvFLkYPeAl-----r~~FprL~EkLeDpDp~V~SAAV~VICELArKnPknyL---- 217 (877)
T KOG1059|consen 147 DDVFTLLNSSKPYVRKKAILLLYKVFLKYPEAL-----RPCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNYL---- 217 (877)
T ss_pred HHHHHHHhcCchHHHHHHHHHHHHHHHhhhHhH-----hhhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCcccc----
Confidence 45788999999999999999999997 355532 245788999999999999999999999998643 4432
Q ss_pred cCcHHHHHHHhccC-CHHHHHHHHHHHHHhhC-CCchhHHHHhcCChHHHHHHhcccCCCCcchHHHHHHHHHH--Hhcc
Q 001833 542 GNVLGPLLHLVSRG-DIQMKKVAVKALRNLSS-VPQNGLQMIKEGAVGPLVDLLLHHSSSSSSLREETATAIMH--LAVS 617 (1008)
Q Consensus 542 ~g~i~~Lv~lL~~~-~~~~~~~A~~aL~~L~~-~~~~~~~i~~~G~v~~Ll~ll~~~~~~~~~~~~~a~~~L~n--La~~ 617 (1008)
..-|.+.++|.+. +-.+.-.-++..++|+- .|.-..+ .+++|.+++.+..- ..+..++..+... +..+
T Consensus 218 -~LAP~ffkllttSsNNWmLIKiiKLF~aLtplEPRLgKK-----Lieplt~li~sT~A--mSLlYECvNTVVa~s~s~g 289 (877)
T KOG1059|consen 218 -QLAPLFYKLLVTSSNNWVLIKLLKLFAALTPLEPRLGKK-----LIEPITELMESTVA--MSLLYECVNTVVAVSMSSG 289 (877)
T ss_pred -cccHHHHHHHhccCCCeehHHHHHHHhhccccCchhhhh-----hhhHHHHHHHhhHH--HHHHHHHHHHheeehhccC
Confidence 3457777877644 44566666777777774 4443333 57899999975431 2333444333322 2221
Q ss_pred ccccccCCcccccccchhHHHHHHHhhccCChHHHHHHHHHHHHhccCCChhhHHHHhhhcCChHHHHHhhccCChhHHH
Q 001833 618 TMYQESSQTPVTLLESDKEIFMLFSLINLTGPNVQQRILQTFNALCRSPSAGNIKTTLTQCSAIPVLVQLCEHDNENVRA 697 (1008)
Q Consensus 618 ~~~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~aL~~L~~~~~~~~~~~~i~e~~~i~~Lv~ll~~~~~~v~~ 697 (1008)
...... .-.-++..|--++..+++.++.-.+-+++.+... .+..... .-..++.+|.+.|+.+|.
T Consensus 290 ~~d~~a--------siqLCvqKLr~fiedsDqNLKYlgLlam~KI~kt--Hp~~Vqa-----~kdlIlrcL~DkD~SIRl 354 (877)
T KOG1059|consen 290 MSDHSA--------SIQLCVQKLRIFIEDSDQNLKYLGLLAMSKILKT--HPKAVQA-----HKDLILRCLDDKDESIRL 354 (877)
T ss_pred CCCcHH--------HHHHHHHHHhhhhhcCCccHHHHHHHHHHHHhhh--CHHHHHH-----hHHHHHHHhccCCchhHH
Confidence 111110 0112455666677789999999999999999874 2222111 246788999999999999
Q ss_pred HHHHHHHHhc
Q 001833 698 NAVKLFCCLV 707 (1008)
Q Consensus 698 ~a~~~L~~Ls 707 (1008)
.|+.+|.-+.
T Consensus 355 rALdLl~gmV 364 (877)
T KOG1059|consen 355 RALDLLYGMV 364 (877)
T ss_pred HHHHHHHHHh
Confidence 9999999987
No 62
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=98.50 E-value=5.1e-06 Score=92.02 Aligned_cols=227 Identities=20% Similarity=0.177 Sum_probs=156.8
Q ss_pred chHHHHHHHcC--CCHHHHHHHHHHHHHhccCChhhHHHhhcc-----CCcHHHHHHHhcc-ChhHHHHHHHHHHHhccC
Q 001833 378 YIPKLIYLLGS--KNRDVRNRALIILHILVKDSNDTKERLANG-----DDAVESIVRSLGR-RIEERKLAVALLLELSTC 449 (1008)
Q Consensus 378 ~i~~L~~lL~s--~~~~~~~~Al~~L~~Ls~~~~~~k~~i~~~-----~g~i~~Lv~~L~~-~~~~~~~A~~~L~~Ls~~ 449 (1008)
....++.+|+. .+.++....+..+..+..+++.....+... .....++++++.+ +.-.+..|+..|..|...
T Consensus 56 ~~~~~l~lL~~~~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~ 135 (312)
T PF03224_consen 56 YASLFLNLLNKLSSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLLSQ 135 (312)
T ss_dssp ------HHHHHH---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHHc
Confidence 45566666653 578888999999998887776555544431 1256788887766 455677888888888654
Q ss_pred chhhHHhhcccchHHHHHHHhcC----CChHHHHHHHHHHHhhcCCcccHHHHHhcCcHHHHHHHH-----hcC--CHHH
Q 001833 450 NTLRDQIGDVQGCILLLVTMASS----DDNQASRDAQELLENLSFSDDNVVQMAKANYFKHLLQRL-----SAG--PESV 518 (1008)
Q Consensus 450 ~~~~~~i~~~~g~i~~Lv~lL~~----~~~~~~~~a~~aL~~Ls~~~~n~~~i~~~g~v~~Lv~~L-----~~~--~~~~ 518 (1008)
...+..-.. .+.++.+++.+++ ++...+..++.+|.+|...++.+..+.+.|+++.+..++ ..+ +..+
T Consensus 136 ~~~~~~~~~-~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql 214 (312)
T PF03224_consen 136 GPKRSEKLV-KEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFWKSNGVSPLFDILRKQATNSNSSGIQL 214 (312)
T ss_dssp TTT--HHHH-HHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHHTHHHHHHHHHHHH---------HHHH
T ss_pred CCccccchH-HHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHHhcCcHHHHHHHHHhhcccCCCCchhH
Confidence 433322211 4667777777764 345667899999999999999999999999999999999 222 4577
Q ss_pred HHHHHHHHHHHcCChhhHHHHhhcCcHHHHHHHhccC-CHHHHHHHHHHHHHhhCCCc--hhHHHHhcCChHHHHHHhcc
Q 001833 519 KMRMATTLAEMELTDHHKASLLEGNVLGPLLHLVSRG-DIQMKKVAVKALRNLSSVPQ--NGLQMIKEGAVGPLVDLLLH 595 (1008)
Q Consensus 519 ~~~aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~-~~~~~~~A~~aL~~L~~~~~--~~~~i~~~G~v~~Ll~ll~~ 595 (1008)
+.+++-+++.|+.+++....+.+.+.|+.|+++++.. ..++.+-++.+|.||...+. +...|+..|+.+.+-.+...
T Consensus 215 ~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~~~mv~~~~l~~l~~L~~r 294 (312)
T PF03224_consen 215 QYQALLCLWLLSFEPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNIELMVLCGLLKTLQNLSER 294 (312)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHHHHHHHH-HHHHHHHHHSS
T ss_pred HHHHHHHHHHHhcCHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHHHHHHHccHHHHHHHHhcC
Confidence 8899999999999999999999999999999999865 67899999999999997655 78888888777766666654
Q ss_pred cCCCCcchHHH
Q 001833 596 HSSSSSSLREE 606 (1008)
Q Consensus 596 ~~~~~~~~~~~ 606 (1008)
.-. ++++.+.
T Consensus 295 k~~-Dedl~ed 304 (312)
T PF03224_consen 295 KWS-DEDLTED 304 (312)
T ss_dssp --S-SHHHHHH
T ss_pred CCC-CHHHHHH
Confidence 332 2555544
No 63
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.49 E-value=7.4e-05 Score=86.16 Aligned_cols=356 Identities=14% Similarity=0.172 Sum_probs=202.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHcCChhhHHHHhhcCcHHHHHHHhccCCHHHHHHHHHHHHHhhC-CCchhHHHHhc
Q 001833 505 KHLLQRLSAGPESVKMRMATTLAEMELTDHHKASLLEGNVLGPLLHLVSRGDIQMKKVAVKALRNLSS-VPQNGLQMIKE 583 (1008)
Q Consensus 505 ~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~-~~~~~~~i~~~ 583 (1008)
..+-+.|+++++.+|..|+++|..+-. .++..=.+-++-+...+.++.+|+.|+.||-.|-+ .++.+.+++
T Consensus 111 ntfQk~L~DpN~LiRasALRvlSsIRv------p~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~e~k~qL~-- 182 (968)
T KOG1060|consen 111 NTFQKALKDPNQLIRASALRVLSSIRV------PMIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDPEQKDQLE-- 182 (968)
T ss_pred HHHHhhhcCCcHHHHHHHHHHHHhcch------hhHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCChhhHHHHH--
Confidence 344455777788888777777766421 11111112233355667788888888888888875 444444332
Q ss_pred CChHHHHHHhcccCCCCcchHHHHHHHHHHHhccccccccCCcccccccchhHHHHHHHhhccCChHHHHHHHHHHHHhc
Q 001833 584 GAVGPLVDLLLHHSSSSSSLREETATAIMHLAVSTMYQESSQTPVTLLESDKEIFMLFSLINLTGPNVQQRILQTFNALC 663 (1008)
Q Consensus 584 G~v~~Ll~ll~~~~~~~~~~~~~a~~~L~nLa~~~~~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~aL~~L~ 663 (1008)
..+=.+|.+.+ +.+.-.|+.+...+|-+.. .++ ++-...+..++..-+.=-|..++..|..-|
T Consensus 183 ---e~I~~LLaD~s---plVvgsAv~AF~evCPerl---------dLI--HknyrklC~ll~dvdeWgQvvlI~mL~RYA 245 (968)
T KOG1060|consen 183 ---EVIKKLLADRS---PLVVGSAVMAFEEVCPERL---------DLI--HKNYRKLCRLLPDVDEWGQVVLINMLTRYA 245 (968)
T ss_pred ---HHHHHHhcCCC---CcchhHHHHHHHHhchhHH---------HHh--hHHHHHHHhhccchhhhhHHHHHHHHHHHH
Confidence 34445555444 5677777777777664321 122 234555666655444444555666666666
Q ss_pred cCCChhh-HHHHhhhc---------------------CChHHH----HHhhccCChhHHHHHHHHHHHhccCCChhHHHh
Q 001833 664 RSPSAGN-IKTTLTQC---------------------SAIPVL----VQLCEHDNENVRANAVKLFCCLVDDGDEAIIRE 717 (1008)
Q Consensus 664 ~~~~~~~-~~~~i~e~---------------------~~i~~L----v~ll~~~~~~v~~~a~~~L~~Ls~~~~~~~~~~ 717 (1008)
++.-... ......+. .-+..| -.++.+.++.+..+++.+++.++ . ...
T Consensus 246 R~~l~~P~~~~~~~e~n~~~~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl~S~n~sVVmA~aql~y~lA-P--~~~--- 319 (968)
T KOG1060|consen 246 RHQLPDPTVVDSSLEDNGRSCNLKDKYNEIRTPYVNDPDLKLLLQSTKPLLQSRNPSVVMAVAQLFYHLA-P--KNQ--- 319 (968)
T ss_pred HhcCCCccccccccccCcccccccccccccCCCcccCccHHHHHHhccHHHhcCCcHHHHHHHhHHHhhC-C--HHH---
Confidence 5311100 00000000 012223 34677888999999999999998 2 111
Q ss_pred hhcccchHHHHHHhcCCCCHHHHHHHHHHHhcCCC-ChhhHHHHHhcCCHHHHHHHhhCCCCCCCchhhHHHHHHHHHHH
Q 001833 718 HVGQKCLETLVTIIQSSHNEEEIASAMGILSKLPE-VPQFTQWLLDAGALPIVLNFLKNGRQNDPNRFQVVENAVGALRR 796 (1008)
Q Consensus 718 ~~~~~~i~~Lv~lL~~~~~~~v~~~a~~~L~nL~~-~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~v~~~a~~aL~~ 796 (1008)
..+++..|+++|.+++ +++.-.+..+..++. .+.. +-|.+-.+.--.. ....++.-=+.+|.+
T Consensus 320 --~~~i~kaLvrLLrs~~--~vqyvvL~nIa~~s~~~~~l--------F~P~lKsFfv~ss----Dp~~vk~lKleiLs~ 383 (968)
T KOG1060|consen 320 --VTKIAKALVRLLRSNR--EVQYVVLQNIATISIKRPTL--------FEPHLKSFFVRSS----DPTQVKILKLEILSN 383 (968)
T ss_pred --HHHHHHHHHHHHhcCC--cchhhhHHHHHHHHhcchhh--------hhhhhhceEeecC----CHHHHHHHHHHHHHH
Confidence 2256889999998854 356666666665554 2211 1233332222211 233455556677787
Q ss_pred hcCCCCHHHHHHHHHcCChHHHHHHhhcCChHHHHHHHHHHhhhhhcCCCCCCCCCCCCcccccCCCCCCcccccCcccC
Q 001833 797 FTAPTNLEWQKRAAEAGVIPKLVQLLEYGTTLTKEHAATSLARFSKNSLGLSRPIPKRKGFWCFSPPPEIGCQVHGGLCG 876 (1008)
Q Consensus 797 L~~~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~v~~~Aa~aL~nLs~~~~~l~~~~~~~~g~~~~~~~~~~~c~vh~~~c~ 876 (1008)
|+.. .... .+++-|-..+++.+-.+...|..+|+..+.....
T Consensus 384 La~e--sni~------~ILrE~q~YI~s~d~~faa~aV~AiGrCA~~~~s------------------------------ 425 (968)
T KOG1060|consen 384 LANE--SNIS------EILRELQTYIKSSDRSFAAAAVKAIGRCASRIGS------------------------------ 425 (968)
T ss_pred Hhhh--ccHH------HHHHHHHHHHhcCchhHHHHHHHHHHHHHHhhCc------------------------------
Confidence 7752 2221 1245566667777767888888888888743322
Q ss_pred cccchhHhhccchHHHHHhhcCCChhhhHHHHHHHHhhhcccccchhhHHHHhcCchHHHHHHhcC-CChHHHHHHHHHH
Q 001833 877 IESSFCLLEANAVRPLVRVLEDPDHGACEASLDALVTLIEGERLQNGSKVLEDANAIDRMVRFLSS-PSPKLQEKALDSV 955 (1008)
Q Consensus 877 ~~~~~~l~~~g~i~~Lv~lL~~~d~~v~~~al~aL~~L~~~~~~~~~~~~i~~~~~i~~l~~ll~~-~~~~l~~~a~~~L 955 (1008)
+...++..|+.++++.|..|...+...+..|++.. +.. -...+..+.+++.. .-+..|...+|++
T Consensus 426 -------v~~tCL~gLv~Llsshde~Vv~eaV~vIk~Llq~~---p~~----h~~ii~~La~lldti~vp~ARA~IiWLi 491 (968)
T KOG1060|consen 426 -------VTDTCLNGLVQLLSSHDELVVAEAVVVIKRLLQKD---PAE----HLEILFQLARLLDTILVPAARAGIIWLI 491 (968)
T ss_pred -------hhhHHHHHHHHHHhcccchhHHHHHHHHHHHHhhC---hHH----HHHHHHHHHHHhhhhhhhhhhceeeeee
Confidence 23346899999999999999999999999998211 111 11124555666632 3455555666777
Q ss_pred HHHh
Q 001833 956 ERIF 959 (1008)
Q Consensus 956 ~~l~ 959 (1008)
..+.
T Consensus 492 ge~~ 495 (968)
T KOG1060|consen 492 GEYC 495 (968)
T ss_pred hhhh
Confidence 6553
No 64
>PF05536 Neurochondrin: Neurochondrin
Probab=98.49 E-value=9.1e-05 Score=87.42 Aligned_cols=367 Identities=17% Similarity=0.154 Sum_probs=223.7
Q ss_pred chHHHHHHHhcCCChHHHHHHHHHHHhhcCCccc----HHHHHhcCcHHHHHHHHhcC-------CHHHHHHHHHHHHHH
Q 001833 461 GCILLLVTMASSDDNQASRDAQELLENLSFSDDN----VVQMAKANYFKHLLQRLSAG-------PESVKMRMATTLAEM 529 (1008)
Q Consensus 461 g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~~~n----~~~i~~~g~v~~Lv~~L~~~-------~~~~~~~aa~~L~~L 529 (1008)
..+..-+++|++.+..-+..++..+.++...++. +..+.++=+.+-+-++|+++ ....+.-++.+|..+
T Consensus 5 ~~l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f 84 (543)
T PF05536_consen 5 ASLEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAF 84 (543)
T ss_pred HHHHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHH
Confidence 3456677888888877788888888888765442 44577776777788888874 345678889999999
Q ss_pred cCChhhHHHHhhcCcHHHHHHHhccCCH-HHHHHHHHHHHHhhCCCchhHHHHhcCChHHHHHHhcccCCCCcchHHHHH
Q 001833 530 ELTDHHKASLLEGNVLGPLLHLVSRGDI-QMKKVAVKALRNLSSVPQNGLQMIKEGAVGPLVDLLLHHSSSSSSLREETA 608 (1008)
Q Consensus 530 s~~~~~k~~i~~~g~i~~Lv~lL~~~~~-~~~~~A~~aL~~L~~~~~~~~~i~~~G~v~~Ll~ll~~~~~~~~~~~~~a~ 608 (1008)
+..++....---.+-||.|++.+...+. .....|..+|..++.+++++..+++.|+++.|.+.+.++ +...+.|.
T Consensus 85 ~~~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~~aLl~~g~v~~L~ei~~~~----~~~~E~Al 160 (543)
T PF05536_consen 85 CRDPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIASSPEGAKALLESGAVPALCEIIPNQ----SFQMEIAL 160 (543)
T ss_pred cCChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhHHHHHhcCCHHHHHHHHHhC----cchHHHHH
Confidence 8866654322224679999999988877 999999999999999999999999999999999999874 45799999
Q ss_pred HHHHHHhccccccccCCcccccccchh----HHHHHHHhhccCChHHHHHHHHHHHHhccCCChhhHHHHhhhcC----C
Q 001833 609 TAIMHLAVSTMYQESSQTPVTLLESDK----EIFMLFSLINLTGPNVQQRILQTFNALCRSPSAGNIKTTLTQCS----A 680 (1008)
Q Consensus 609 ~~L~nLa~~~~~~~~~~~~~~~l~~~~----~i~~L~~ll~~~~~~v~~~al~aL~~L~~~~~~~~~~~~i~e~~----~ 680 (1008)
.+|.++........ .-.... .+..+-..........+-.++..|..+-...+.. ......... .
T Consensus 161 ~lL~~Lls~~~~~~-------~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~-~~~~~~~~~W~~~l 232 (543)
T PF05536_consen 161 NLLLNLLSRLGQKS-------WAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPIL-PLESPPSPKWLSDL 232 (543)
T ss_pred HHHHHHHHhcchhh-------hhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCcc-ccccCChhhhHHHH
Confidence 99999987543111 011111 2233333333334444556677777766543110 001111111 2
Q ss_pred hHHHHHhhccC-ChhHHHHHHHHHHHhccCCChhHHHhhh---cccchHHHHHH---------------hcCCCCH----
Q 001833 681 IPVLVQLCEHD-NENVRANAVKLFCCLVDDGDEAIIREHV---GQKCLETLVTI---------------IQSSHNE---- 737 (1008)
Q Consensus 681 i~~Lv~ll~~~-~~~v~~~a~~~L~~Ls~~~~~~~~~~~~---~~~~i~~Lv~l---------------L~~~~~~---- 737 (1008)
...|..++++. .+..|..++.+.+.|......+.+-.-- .....-.++++ .......
T Consensus 233 ~~gl~~iL~sr~~~~~R~~al~Laa~Ll~~~G~~wl~~~~~~~~~~F~~Llv~l~~VEir~~L~~L~~~~~~~~~~~~~~ 312 (543)
T PF05536_consen 233 RKGLRDILQSRLTPSQRDPALNLAASLLDLLGPEWLFADDKKSGKKFLLLLVNLACVEIRMSLEELLEQLNPEEYPEKQR 312 (543)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhChHhhcCCCCCCcccHHHHHHHHHHHHHHHHhHHhhhcCCchhhHHHHH
Confidence 33455566665 6777777777776665221111110000 01122222222 1111111
Q ss_pred ------HHHHHHHHHHhcCCC------ChhhHHHHHh--cCCHHHHHHHhhCCCCCCCchhhHHHHHHHHHHHhcCCCCH
Q 001833 738 ------EEIASAMGILSKLPE------VPQFTQWLLD--AGALPIVLNFLKNGRQNDPNRFQVVENAVGALRRFTAPTNL 803 (1008)
Q Consensus 738 ------~v~~~a~~~L~nL~~------~~~~~~~l~~--~g~l~~Lv~lL~~~~~~~~~~~~v~~~a~~aL~~L~~~~~~ 803 (1008)
.+.+...+.+.+-.. +++....+.. .+.+..++.+|++-.+....++...-+++++|+.+.+-.+.
T Consensus 313 ~L~~cf~ilE~~I~~l~~~~~~~~~~~~~~~l~kl~~~l~e~~~~vle~L~~~~d~~~~d~~~vlAsvR~L~~WLaEe~~ 392 (543)
T PF05536_consen 313 LLASCFSILEHFIGYLVRSLEEESLDLDPDTLLKLRTSLSETFSAVLEYLRDVWDESQKDPDFVLASVRVLGAWLAEETS 392 (543)
T ss_pred HHHHHHHHHHHHHHHHHhccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHhChH
Confidence 111222222333111 2333333332 45677888888875444334444888899999998875333
Q ss_pred HHHHHHHHcCChHHHHHHhhcCCh----------HHHHHHHHHHhhhh
Q 001833 804 EWQKRAAEAGVIPKLVQLLEYGTT----------LTKEHAATSLARFS 841 (1008)
Q Consensus 804 ~~~~~l~~~g~l~~Lv~lL~~~~~----------~v~~~Aa~aL~nLs 841 (1008)
..++.+ .|.+|.++++.+.+.. +..+.-.-+|.+++
T Consensus 393 ~lr~~v--~~Ll~~ll~~~~~~~~~~~~~~~~~~d~~r~lLPaL~~lt 438 (543)
T PF05536_consen 393 ALRKEV--YGLLPFLLSLYRESFQEAEPAREGPLDFLRFLLPALCHLT 438 (543)
T ss_pred HHHHHH--HHHHHHHHHHHhhhhhhcccccccchhHHHHHHHHHhhhh
Confidence 345555 5899999999986433 34555666666666
No 65
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=98.48 E-value=0.00035 Score=82.23 Aligned_cols=418 Identities=14% Similarity=0.124 Sum_probs=225.8
Q ss_pred HHHHHHcC--CCHHHHHHHHHHHHHhccC-ChhhHHHhhccCCcHHHHHHHhccChhHHHHHHHHHHHhccCch--hhHH
Q 001833 381 KLIYLLGS--KNRDVRNRALIILHILVKD-SNDTKERLANGDDAVESIVRSLGRRIEERKLAVALLLELSTCNT--LRDQ 455 (1008)
Q Consensus 381 ~L~~lL~s--~~~~~~~~Al~~L~~Ls~~-~~~~k~~i~~~~g~i~~Lv~~L~~~~~~~~~A~~~L~~Ls~~~~--~~~~ 455 (1008)
..+..|.+ .|.++++.|+.++..+-.. .+.-+..+ ...++.+++-|++.. +|-.|+..+-.++..+- ....
T Consensus 572 ~tl~rL~a~d~DqeVkeraIscmgq~i~~fgD~l~~eL---~~~L~il~eRl~nEi-TRl~AvkAlt~Ia~S~l~i~l~~ 647 (1233)
T KOG1824|consen 572 CTLQRLKATDSDQEVKERAISCMGQIIANFGDFLGNEL---PRTLPILLERLGNEI-TRLTAVKALTLIAMSPLDIDLSP 647 (1233)
T ss_pred HHHHHHhcccccHHHHHHHHHHHHHHHHHHhhhhhhhh---HHHHHHHHHHHhchh-HHHHHHHHHHHHHhccceeehhh
Confidence 33444554 4678999999988765432 11111111 234555555554432 46666666666554332 2222
Q ss_pred hhcccchHHHHHHHhcCCChHHHHHHHHHHHhhcCC-cccHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHHcCChh
Q 001833 456 IGDVQGCILLLVTMASSDDNQASRDAQELLENLSFS-DDNVVQMAKANYFKHLLQRLSAGPESVKMRMATTLAEMELTDH 534 (1008)
Q Consensus 456 i~~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~-~~n~~~i~~~g~v~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~~~ 534 (1008)
++ ..+++.|.+.++......+...+.++-.|..+ .++...-.-.-++..+..++...+..+-..+...|..+.....
T Consensus 648 ~l--~~il~~l~~flrK~~r~lr~~~l~a~~~L~~~~~~~~~~~~~e~vL~el~~Lisesdlhvt~~a~~~L~tl~~~~p 725 (1233)
T KOG1824|consen 648 VL--TEILPELASFLRKNQRALRLATLTALDKLVKNYSDSIPAELLEAVLVELPPLISESDLHVTQLAVAFLTTLAIIQP 725 (1233)
T ss_pred hH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhccc
Confidence 22 35678888888766555666666666655321 1111111111223333344555566677888888888876665
Q ss_pred hHHHHhhcCcHHHHHHHhccCCHHHHHHHHHHHHHhhCCCchhHHHHh---cCC-hHHHHHHhcccCCCC--cchHHHHH
Q 001833 535 HKASLLEGNVLGPLLHLVSRGDIQMKKVAVKALRNLSSVPQNGLQMIK---EGA-VGPLVDLLLHHSSSS--SSLREETA 608 (1008)
Q Consensus 535 ~k~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~~~~~~~i~~---~G~-v~~Ll~ll~~~~~~~--~~~~~~a~ 608 (1008)
....-...-+++.++.+++++- .+-.|..++.++- ..++. .+. +..++.++..+-.+. ..+-.+|.
T Consensus 726 s~l~~~~~~iL~~ii~ll~Spl--lqg~al~~~l~~f------~alV~t~~~~l~y~~l~s~lt~PV~~~~~~~l~kqa~ 797 (1233)
T KOG1824|consen 726 SSLLKISNPILDEIIRLLRSPL--LQGGALSALLLFF------QALVITKEPDLDYISLLSLLTAPVYEQVTDGLHKQAY 797 (1233)
T ss_pred HHHHHHhhhhHHHHHHHhhCcc--ccchHHHHHHHHH------HHHHhcCCCCccHHHHHHHHcCCcccccccchhHHHH
Confidence 5544445568899999997754 4444554444432 11111 111 455666665433221 11333443
Q ss_pred HHHHHHhc----cccccccCCcccccccchhHHHHHHHhhc--cCChHHHHHHHHHHHHhccCCChhhHHHHhhhcCChH
Q 001833 609 TAIMHLAV----STMYQESSQTPVTLLESDKEIFMLFSLIN--LTGPNVQQRILQTFNALCRSPSAGNIKTTLTQCSAIP 682 (1008)
Q Consensus 609 ~~L~nLa~----~~~~~~~~~~~~~~l~~~~~i~~L~~ll~--~~~~~v~~~al~aL~~L~~~~~~~~~~~~i~e~~~i~ 682 (1008)
..++..+. .... .+......+..-+. ..+..++.-++-.|..+.++..... ..+.-.
T Consensus 798 ~siA~cvA~Lt~~~~~-----------~s~s~a~kl~~~~~s~~s~~~ikvfa~LslGElgr~~~~s~------~~e~~~ 860 (1233)
T KOG1824|consen 798 YSIAKCVAALTCACPQ-----------KSKSLATKLIQDLQSPKSSDSIKVFALLSLGELGRRKDLSP------QNELKD 860 (1233)
T ss_pred HHHHHHHHHHHHhccc-----------cchhHHHHHHHHHhCCCCchhHHHHHHhhhhhhccCCCCCc------chhhHH
Confidence 33333322 1110 01222333333333 3455677778888888877643221 123455
Q ss_pred HHHHhhccCChhHHHHHHHHHHHhccCCC-hhHHHhhhc----------------------------ccchHHHHHHhcC
Q 001833 683 VLVQLCEHDNENVRANAVKLFCCLVDDGD-EAIIREHVG----------------------------QKCLETLVTIIQS 733 (1008)
Q Consensus 683 ~Lv~ll~~~~~~v~~~a~~~L~~Ls~~~~-~~~~~~~~~----------------------------~~~i~~Lv~lL~~ 733 (1008)
.+++-+.+++++++.+|..+|++++ .|+ +..+..+.+ ...++.++.+|..
T Consensus 861 ~iieaf~sp~edvksAAs~ALGsl~-vgnl~~yLpfil~qi~sqpk~QyLLLhSlkevi~~~svd~~~~~v~~IW~lL~k 939 (1233)
T KOG1824|consen 861 TIIEAFNSPSEDVKSAASYALGSLA-VGNLPKYLPFILEQIESQPKRQYLLLHSLKEVIVSASVDGLKPYVEKIWALLFK 939 (1233)
T ss_pred HHHHHcCCChHHHHHHHHHHhhhhh-cCchHhHHHHHHHHHhcchHhHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHH
Confidence 7788889999999999999999998 433 222221110 1233344444432
Q ss_pred C---CCHHHHHHHHHHHhcCCC-ChhhHHHHHhcCCHHHHHHHhhCCCCCCCchhhHHHHHHHHHHHhcCCCCHHHHHHH
Q 001833 734 S---HNEEEIASAMGILSKLPE-VPQFTQWLLDAGALPIVLNFLKNGRQNDPNRFQVVENAVGALRRFTAPTNLEWQKRA 809 (1008)
Q Consensus 734 ~---~~~~v~~~a~~~L~nL~~-~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~v~~~a~~aL~~L~~~~~~~~~~~l 809 (1008)
+ .++..+.-.+.+||.|+. +|+. .+|.|-..+.+ ..+..+-.++.++--.... .+.-...+
T Consensus 940 ~cE~~eegtR~vvAECLGkL~l~epes--------LlpkL~~~~~S------~a~~~rs~vvsavKfsisd-~p~~id~~ 1004 (1233)
T KOG1824|consen 940 HCECAEEGTRNVVAECLGKLVLIEPES--------LLPKLKLLLRS------EASNTRSSVVSAVKFSISD-QPQPIDPL 1004 (1233)
T ss_pred hcccchhhhHHHHHHHhhhHHhCChHH--------HHHHHHHHhcC------CCcchhhhhhheeeeeecC-CCCccCHH
Confidence 2 122345555666666665 4332 46777777777 3444555555554433332 23222222
Q ss_pred HHcCChHHHHHHhhcCChHHHHHHHHHHhhhhhcCCC
Q 001833 810 AEAGVIPKLVQLLEYGTTLTKEHAATSLARFSKNSLG 846 (1008)
Q Consensus 810 ~~~g~l~~Lv~lL~~~~~~v~~~Aa~aL~nLs~~~~~ 846 (1008)
. ...+..+..++++++.+|++.|..++...+.+.+.
T Consensus 1005 l-k~~ig~fl~~~~dpDl~VrrvaLvv~nSaahNKps 1040 (1233)
T KOG1824|consen 1005 L-KQQIGDFLKLLRDPDLEVRRVALVVLNSAAHNKPS 1040 (1233)
T ss_pred H-HHHHHHHHHHHhCCchhHHHHHHHHHHHHHccCHh
Confidence 2 23456788899999999999999999999876554
No 66
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.46 E-value=7.1e-06 Score=87.69 Aligned_cols=186 Identities=19% Similarity=0.158 Sum_probs=156.4
Q ss_pred CCChHHHHHHHHHHHhhcCCcccHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHHcCCh-hhHHHHhhcCcHHHHHH
Q 001833 472 SDDNQASRDAQELLENLSFSDDNVVQMAKANYFKHLLQRLSAGPESVKMRMATTLAEMELTD-HHKASLLEGNVLGPLLH 550 (1008)
Q Consensus 472 ~~~~~~~~~a~~aL~~Ls~~~~n~~~i~~~g~v~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~~-~~k~~i~~~g~i~~Lv~ 550 (1008)
+.+++-++.|+.-|..++.+=+|-..++..|+..+++..+.+++..+|+.|+++|+..+.+. .....+.+.|+++.|+.
T Consensus 94 s~~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~ 173 (342)
T KOG2160|consen 94 SVDLEDKEDALDNLEELVEDIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLK 173 (342)
T ss_pred cCCHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHH
Confidence 45778889999999999988899999999999999999999999999999999999997654 77788999999999999
Q ss_pred HhccC-CHHHHHHHHHHHHHhhC-CCchhHHHHhcCChHHHHHHhcccCCCCcchHHHHHHHHHHHhccccccccCCccc
Q 001833 551 LVSRG-DIQMKKVAVKALRNLSS-VPQNGLQMIKEGAVGPLVDLLLHHSSSSSSLREETATAIMHLAVSTMYQESSQTPV 628 (1008)
Q Consensus 551 lL~~~-~~~~~~~A~~aL~~L~~-~~~~~~~i~~~G~v~~Ll~ll~~~~~~~~~~~~~a~~~L~nLa~~~~~~~~~~~~~ 628 (1008)
.+.+. +..++..|+.|+..|-+ ++.....+...++...|...+++++.. ..++..++..+..|.........
T Consensus 174 ~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~-~~lkrK~~~Ll~~Ll~~~~s~~d----- 247 (342)
T KOG2160|consen 174 ILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTS-VKLKRKALFLLSLLLQEDKSDED----- 247 (342)
T ss_pred HHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcc-hHHHHHHHHHHHHHHHhhhhhhh-----
Confidence 99865 45677999999999996 566778888999999999999987655 78999999999999986655443
Q ss_pred ccccchhHHHHHHHhhccCChHHHHHHHHHHHHhcc
Q 001833 629 TLLESDKEIFMLFSLINLTGPNVQQRILQTFNALCR 664 (1008)
Q Consensus 629 ~~l~~~~~i~~L~~ll~~~~~~v~~~al~aL~~L~~ 664 (1008)
+....+....+..+..+.+.++++.++.++..+..
T Consensus 248 -~~~~~~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~ 282 (342)
T KOG2160|consen 248 -IASSLGFQRVLENLISSLDFEVNEAALTALLSLLS 282 (342)
T ss_pred -HHHHhhhhHHHHHHhhccchhhhHHHHHHHHHHHH
Confidence 45555666677777777888888888887777654
No 67
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=98.44 E-value=2.2e-06 Score=94.92 Aligned_cols=229 Identities=19% Similarity=0.266 Sum_probs=156.0
Q ss_pred hHHHHHHHhc--CCChHHHHHHHHHHHhhcCCccc-HHHHHh------cCcHHHHHHHHhcCCHHHHHHHHHHHHHHcCC
Q 001833 462 CILLLVTMAS--SDDNQASRDAQELLENLSFSDDN-VVQMAK------ANYFKHLLQRLSAGPESVKMRMATTLAEMELT 532 (1008)
Q Consensus 462 ~i~~Lv~lL~--~~~~~~~~~a~~aL~~Ls~~~~n-~~~i~~------~g~v~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~ 532 (1008)
....++++|+ +.++++.+..+..+..+...++. ...+.. .....+++.++..++.-++..++.+|..+...
T Consensus 56 ~~~~~l~lL~~~~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~ 135 (312)
T PF03224_consen 56 YASLFLNLLNKLSSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLLSQ 135 (312)
T ss_dssp ------HHHHHH---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHHc
Confidence 3445555555 46888888899999888765544 333333 23678899988888999999999999999665
Q ss_pred hhhHHHHhhcCcHHHHHHHhcc----CCHHHHHHHHHHHHHhhCCCchhHHHHhcCChHHHHHHh-----cccCCCCcch
Q 001833 533 DHHKASLLEGNVLGPLLHLVSR----GDIQMKKVAVKALRNLSSVPQNGLQMIKEGAVGPLVDLL-----LHHSSSSSSL 603 (1008)
Q Consensus 533 ~~~k~~i~~~g~i~~Lv~lL~~----~~~~~~~~A~~aL~~L~~~~~~~~~i~~~G~v~~Ll~ll-----~~~~~~~~~~ 603 (1008)
...+..-...+.++.+++++.+ .+...+..|+.+|.+|...++.|..+.+.|+++.+..++ .+++.+ ..+
T Consensus 136 ~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~-~Ql 214 (312)
T PF03224_consen 136 GPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFWKSNGVSPLFDILRKQATNSNSSG-IQL 214 (312)
T ss_dssp TTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHHTHHHHHHHHHHHH---------H-HHH
T ss_pred CCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHHhcCcHHHHHHHHHhhcccCCCCc-hhH
Confidence 5444333235677888888775 344567899999999999999999999999999999999 233333 789
Q ss_pred HHHHHHHHHHHhccccccccCCcccccccchhHHHHHHHhhc-cCChHHHHHHHHHHHHhccCCChhhHHHHhhhcCChH
Q 001833 604 REETATAIMHLAVSTMYQESSQTPVTLLESDKEIFMLFSLIN-LTGPNVQQRILQTFNALCRSPSAGNIKTTLTQCSAIP 682 (1008)
Q Consensus 604 ~~~a~~~L~nLa~~~~~~~~~~~~~~~l~~~~~i~~L~~ll~-~~~~~v~~~al~aL~~L~~~~~~~~~~~~i~e~~~i~ 682 (1008)
+.+++-++|.|+.++..... +...+.++.++.+++ ...+.+.+-++.+|.|+.... ...+...+..+++++
T Consensus 215 ~Y~~ll~lWlLSF~~~~~~~-------~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~-~~~~~~~mv~~~~l~ 286 (312)
T PF03224_consen 215 QYQALLCLWLLSFEPEIAEE-------LNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKA-PKSNIELMVLCGLLK 286 (312)
T ss_dssp HHHHHHHHHHHTTSHHHHHH-------HHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSS-STTHHHHHHHH-HHH
T ss_pred HHHHHHHHHHHhcCHHHHHH-------HhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhcc-HHHHHHHHHHccHHH
Confidence 99999999999997765543 555568999999988 456789999999999999863 233677788877666
Q ss_pred HHHHhhccC--ChhHHHHH
Q 001833 683 VLVQLCEHD--NENVRANA 699 (1008)
Q Consensus 683 ~Lv~ll~~~--~~~v~~~a 699 (1008)
.+-.|.... |+++....
T Consensus 287 ~l~~L~~rk~~Dedl~edl 305 (312)
T PF03224_consen 287 TLQNLSERKWSDEDLTEDL 305 (312)
T ss_dssp HHHHHHSS--SSHHHHHHH
T ss_pred HHHHHhcCCCCCHHHHHHH
Confidence 666655543 67766554
No 68
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.43 E-value=0.0019 Score=75.48 Aligned_cols=441 Identities=16% Similarity=0.170 Sum_probs=233.3
Q ss_pred CcHHHHHHHhccC-----hhHHHHHHHHHHHhccCchhhHHhhcccchHHHHHHHhcCCChHHHHHHHHHHHhhcCCccc
Q 001833 420 DAVESIVRSLGRR-----IEERKLAVALLLELSTCNTLRDQIGDVQGCILLLVTMASSDDNQASRDAQELLENLSFSDDN 494 (1008)
Q Consensus 420 g~i~~Lv~~L~~~-----~~~~~~A~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~~~n 494 (1008)
..+-.++..|.++ --+...|..+|.+++.-+.. ....|...++++..++-+++.|+.+..++-.-..+
T Consensus 103 dvllLltNslknDL~s~nq~vVglAL~alg~i~s~Ema-------rdlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P~ 175 (866)
T KOG1062|consen 103 DLLLLLTNSLKNDLNSSNQYVVGLALCALGNICSPEMA-------RDLAPEVERLLQHRDPYIRKKAALCAVRFIRKVPD 175 (866)
T ss_pred HHHHHHHHHHHhhccCCCeeehHHHHHHhhccCCHHHh-------HHhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCch
Confidence 3444556666543 12355677777777654333 23456677888899999999999998887543332
Q ss_pred HHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHHcCC-hhhHHHHhhcCcHHHHHHHhcc---------------CCHH
Q 001833 495 VVQMAKANYFKHLLQRLSAGPESVKMRMATTLAEMELT-DHHKASLLEGNVLGPLLHLVSR---------------GDIQ 558 (1008)
Q Consensus 495 ~~~i~~~g~v~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~-~~~k~~i~~~g~i~~Lv~lL~~---------------~~~~ 558 (1008)
... -.+++..++|.+.+..+-......+..++.. ++.-..+.+ .++.||..|+. .+|-
T Consensus 176 l~e----~f~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l~~fr~--l~~~lV~iLk~l~~~~yspeydv~gi~dPF 249 (866)
T KOG1062|consen 176 LVE----HFVIAFRKLLCEKHHGVLIAGLHLITELCKISPDALSYFRD--LVPSLVKILKQLTNSGYSPEYDVHGISDPF 249 (866)
T ss_pred HHH----HhhHHHHHHHhhcCCceeeeHHHHHHHHHhcCHHHHHHHHH--HHHHHHHHHHHHhcCCCCCccCccCCCchH
Confidence 221 1233344555555544555555555555332 222222222 44555554431 2566
Q ss_pred HHHHHHHHHHHhhCCCchhHHHHhcCChHHHHHHhcccCCC---CcchHHHHHHHHHHHhccccccccCCcccccccchh
Q 001833 559 MKKVAVKALRNLSSVPQNGLQMIKEGAVGPLVDLLLHHSSS---SSSLREETATAIMHLAVSTMYQESSQTPVTLLESDK 635 (1008)
Q Consensus 559 ~~~~A~~aL~~L~~~~~~~~~i~~~G~v~~Ll~ll~~~~~~---~~~~~~~a~~~L~nLa~~~~~~~~~~~~~~~l~~~~ 635 (1008)
.+...+..|+-|..++......+. ..|-+........ --.+..+++.++..+-.++.-+. -
T Consensus 250 LQi~iLrlLriLGq~d~daSd~M~----DiLaqvatntdsskN~GnAILYE~V~TI~~I~~~~~Lrv------------l 313 (866)
T KOG1062|consen 250 LQIRILRLLRILGQNDADASDLMN----DILAQVATNTDSSKNAGNAILYECVRTIMDIRSNSGLRV------------L 313 (866)
T ss_pred HHHHHHHHHHHhcCCCccHHHHHH----HHHHHHHhcccccccchhHHHHHHHHHHHhccCCchHHH------------H
Confidence 666677766666654333222211 1222222211100 01234444444444433332221 2
Q ss_pred HHHHHHHhhccCChHHHHHHHHHHHHhccCCChhhHHHHhhhcCChHHHHHhhccCChhHHHHHHHHHHHhccCCChhHH
Q 001833 636 EIFMLFSLINLTGPNVQQRILQTFNALCRSPSAGNIKTTLTQCSAIPVLVQLCEHDNENVRANAVKLFCCLVDDGDEAII 715 (1008)
Q Consensus 636 ~i~~L~~ll~~~~~~v~~~al~aL~~L~~~~~~~~~~~~i~e~~~i~~Lv~ll~~~~~~v~~~a~~~L~~Ls~~~~~~~~ 715 (1008)
++..|-+.|.+.+-.++..++..|..+....... +... =..+++.++++|..++..|..++..|. +.. ++
T Consensus 314 ainiLgkFL~n~d~NirYvaLn~L~r~V~~d~~a-----vqrH--r~tIleCL~DpD~SIkrralELs~~lv-n~~--Nv 383 (866)
T KOG1062|consen 314 AINILGKFLLNRDNNIRYVALNMLLRVVQQDPTA-----VQRH--RSTILECLKDPDVSIKRRALELSYALV-NES--NV 383 (866)
T ss_pred HHHHHHHHhcCCccceeeeehhhHHhhhcCCcHH-----HHHH--HHHHHHHhcCCcHHHHHHHHHHHHHHh-ccc--cH
Confidence 4555555666666667777777777766532111 1111 346788899999999999999999998 322 22
Q ss_pred HhhhcccchHHHHHHhcCCCCHHHHHHHHHHHhcCCC--ChhhHHHHHhcCCHHHHHHHhhCCCCCCCchhhHHHHHHHH
Q 001833 716 REHVGQKCLETLVTIIQSSHNEEEIASAMGILSKLPE--VPQFTQWLLDAGALPIVLNFLKNGRQNDPNRFQVVENAVGA 793 (1008)
Q Consensus 716 ~~~~~~~~i~~Lv~lL~~~~~~~v~~~a~~~L~nL~~--~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~v~~~a~~a 793 (1008)
. ..+..|+..|... +++.+...+.-+..++. .|+.+. .+..+.+.+...... .+.++.-+.+..
T Consensus 384 ~-----~mv~eLl~fL~~~-d~~~k~~~as~I~~laEkfaP~k~W------~idtml~Vl~~aG~~--V~~dv~~nll~L 449 (866)
T KOG1062|consen 384 R-----VMVKELLEFLESS-DEDFKADIASKIAELAEKFAPDKRW------HIDTMLKVLKTAGDF--VNDDVVNNLLRL 449 (866)
T ss_pred H-----HHHHHHHHHHHhc-cHHHHHHHHHHHHHHHHhcCCcchh------HHHHHHHHHHhcccc--cchhhHHHHHHH
Confidence 2 3467788888885 66788888887877776 443333 245666666662211 122333333333
Q ss_pred HHHhcCCCCHHHHHHHHHcCChHHHHHHhhcCChHHHHHHHHHHhhhhhcCCCCCCCCCCCCcccccCCCCCCcccccCc
Q 001833 794 LRRFTAPTNLEWQKRAAEAGVIPKLVQLLEYGTTLTKEHAATSLARFSKNSLGLSRPIPKRKGFWCFSPPPEIGCQVHGG 873 (1008)
Q Consensus 794 L~~L~~~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~v~~~Aa~aL~nLs~~~~~l~~~~~~~~g~~~~~~~~~~~c~vh~~ 873 (1008)
+.+=....+......+... +.... ++....+.+..-|.|+|+....---+ |
T Consensus 450 Ia~~~~e~~~y~~~rLy~a--~~~~~-~~~is~e~l~qVa~W~IGEYGdlll~--------------------------~ 500 (866)
T KOG1062|consen 450 IANAFQELHEYAVLRLYLA--LSEDT-LLDISQEPLLQVASWCIGEYGDLLLD--------------------------G 500 (866)
T ss_pred HhcCCcchhhHHHHHHHHH--Hhhhh-hhhhhhhhHHHHHHHHhhhhhHHhhc--------------------------C
Confidence 3332111111111111111 11111 23344556788899999876511100 0
Q ss_pred ccCcccchhHhhccchHHHHHhhc--CCChhhhHHHHHHHHhhhcccccchhhHHHHhcCchHHHHHH----hcCCChHH
Q 001833 874 LCGIESSFCLLEANAVRPLVRVLE--DPDHGACEASLDALVTLIEGERLQNGSKVLEDANAIDRMVRF----LSSPSPKL 947 (1008)
Q Consensus 874 ~c~~~~~~~l~~~g~i~~Lv~lL~--~~d~~v~~~al~aL~~L~~~~~~~~~~~~i~~~~~i~~l~~l----l~~~~~~l 947 (1008)
.|. +.....-+..++..|..++. ..+..++..|+.||..|... +... .+.+.++ ..+-+.++
T Consensus 501 ~~~-~~p~~vtesdivd~l~~v~~~~~s~~~tk~yal~Al~KLSsr--~~s~---------~~ri~~lI~~~~~s~~~el 568 (866)
T KOG1062|consen 501 ANE-EEPIKVTESDIVDKLEKVLMSHSSDSTTKGYALTALLKLSSR--FHSS---------SERIKQLISSYKSSLDTEL 568 (866)
T ss_pred ccc-cCCCcCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhh--cccc---------HHHHHHHHHHhcccccHHH
Confidence 000 11111224567788888776 35677999999999999811 1011 3333333 35678899
Q ss_pred HHHHHHH
Q 001833 948 QEKALDS 954 (1008)
Q Consensus 948 ~~~a~~~ 954 (1008)
|++|...
T Consensus 569 QQRa~E~ 575 (866)
T KOG1062|consen 569 QQRAVEY 575 (866)
T ss_pred HHHHHHH
Confidence 9999875
No 69
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=98.43 E-value=3.7e-05 Score=87.02 Aligned_cols=243 Identities=19% Similarity=0.125 Sum_probs=179.7
Q ss_pred cchHHHHHHHhc-CCChHHHHHHHHHHHhhcCCcccHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHHcCChhhHHH
Q 001833 460 QGCILLLVTMAS-SDDNQASRDAQELLENLSFSDDNVVQMAKANYFKHLLQRLSAGPESVKMRMATTLAEMELTDHHKAS 538 (1008)
Q Consensus 460 ~g~i~~Lv~lL~-~~~~~~~~~a~~aL~~Ls~~~~n~~~i~~~g~v~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~~~~k~~ 538 (1008)
..+++.|+..+. .+++.+...++.+|... .+ ..++..|+..|.+.++.++..++.+|+.
T Consensus 53 ~~a~~~L~~aL~~d~~~ev~~~aa~al~~~--~~--------~~~~~~L~~~L~d~~~~vr~aaa~ALg~---------- 112 (410)
T TIGR02270 53 KAATELLVSALAEADEPGRVACAALALLAQ--ED--------ALDLRSVLAVLQAGPEGLCAGIQAALGW---------- 112 (410)
T ss_pred HhHHHHHHHHHhhCCChhHHHHHHHHHhcc--CC--------hHHHHHHHHHhcCCCHHHHHHHHHHHhc----------
Confidence 457888898885 56677766665555322 11 1238889999999988899999999987
Q ss_pred HhhcCcHHHHHHHhccCCHHHHHHHHHHHHHhhCCCchhHHHHhcCChHHHHHHhcccCCCCcchHHHHHHHHHHHhccc
Q 001833 539 LLEGNVLGPLLHLVSRGDIQMKKVAVKALRNLSSVPQNGLQMIKEGAVGPLVDLLLHHSSSSSSLREETATAIMHLAVST 618 (1008)
Q Consensus 539 i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~~~~~~~i~~~G~v~~Ll~ll~~~~~~~~~~~~~a~~~L~nLa~~~ 618 (1008)
+...+..+.|+.+|.+.++.++..++.++... .....+.+..++.+.+ +.++..|+.+|..+..
T Consensus 113 i~~~~a~~~L~~~L~~~~p~vR~aal~al~~r-----------~~~~~~~L~~~L~d~d---~~Vra~A~raLG~l~~-- 176 (410)
T TIGR02270 113 LGGRQAEPWLEPLLAASEPPGRAIGLAALGAH-----------RHDPGPALEAALTHED---ALVRAAALRALGELPR-- 176 (410)
T ss_pred CCchHHHHHHHHHhcCCChHHHHHHHHHHHhh-----------ccChHHHHHHHhcCCC---HHHHHHHHHHHHhhcc--
Confidence 45577889999999999999998888777662 1224578888887443 7899999999988753
Q ss_pred cccccCCcccccccchhHHHHHHHhhccCChHHHHHHHHHHHHhccCCChhhHHHHhhhcCChHHHHHhhccCChhHHHH
Q 001833 619 MYQESSQTPVTLLESDKEIFMLFSLINLTGPNVQQRILQTFNALCRSPSAGNIKTTLTQCSAIPVLVQLCEHDNENVRAN 698 (1008)
Q Consensus 619 ~~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~aL~~L~~~~~~~~~~~~i~e~~~i~~Lv~ll~~~~~~v~~~ 698 (1008)
...++.|...+.+.++.++..++.++..+.. + .++..+..+....+......
T Consensus 177 ---------------~~a~~~L~~al~d~~~~VR~aA~~al~~lG~----~---------~A~~~l~~~~~~~g~~~~~~ 228 (410)
T TIGR02270 177 ---------------RLSESTLRLYLRDSDPEVRFAALEAGLLAGS----R---------LAWGVCRRFQVLEGGPHRQR 228 (410)
T ss_pred ---------------ccchHHHHHHHcCCCHHHHHHHHHHHHHcCC----H---------hHHHHHHHHHhccCccHHHH
Confidence 3567778888999999999999999977733 1 34666676555555555554
Q ss_pred HHHHHHHhccCCChhHHHhhhcccchHHHHHHhcCCCCHHHHHHHHHHHhcCCCChhhHHHHHhcCCHHHHHHHhhCCCC
Q 001833 699 AVKLFCCLVDDGDEAIIREHVGQKCLETLVTIIQSSHNEEEIASAMGILSKLPEVPQFTQWLLDAGALPIVLNFLKNGRQ 778 (1008)
Q Consensus 699 a~~~L~~Ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~v~~~a~~~L~nL~~~~~~~~~l~~~g~l~~Lv~lL~~~~~ 778 (1008)
+..++...- ....++.|..++.+. .++..++.+++.+- +...++.|+..+.+
T Consensus 229 l~~~lal~~------------~~~a~~~L~~ll~d~---~vr~~a~~AlG~lg----------~p~av~~L~~~l~d--- 280 (410)
T TIGR02270 229 LLVLLAVAG------------GPDAQAWLRELLQAA---ATRREALRAVGLVG----------DVEAAPWCLEAMRE--- 280 (410)
T ss_pred HHHHHHhCC------------chhHHHHHHHHhcCh---hhHHHHHHHHHHcC----------CcchHHHHHHHhcC---
Confidence 444444441 225788888888774 37888999998876 45688999999987
Q ss_pred CCCchhhHHHHHHHHHHHhcC
Q 001833 779 NDPNRFQVVENAVGALRRFTA 799 (1008)
Q Consensus 779 ~~~~~~~v~~~a~~aL~~L~~ 799 (1008)
..++..|-.++..++-
T Consensus 281 -----~~~aR~A~eA~~~ItG 296 (410)
T TIGR02270 281 -----PPWARLAGEAFSLITG 296 (410)
T ss_pred -----cHHHHHHHHHHHHhhC
Confidence 2389999999999986
No 70
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=98.42 E-value=0.00015 Score=82.91 Aligned_cols=446 Identities=13% Similarity=0.133 Sum_probs=235.2
Q ss_pred hHHHHHHHhcCCChHHHHHHHHHHHhhcCCc-ccHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHHcCChhhHHHHh
Q 001833 462 CILLLVTMASSDDNQASRDAQELLENLSFSD-DNVVQMAKANYFKHLLQRLSAGPESVKMRMATTLAEMELTDHHKASLL 540 (1008)
Q Consensus 462 ~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~~-~n~~~i~~~g~v~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~~~~k~~i~ 540 (1008)
++.+|.+=.+.........-+.++..|+-.. ..-.......++-.++.=..+++++.+...+.++...+..+..-....
T Consensus 595 VlkpLwkgir~hrgk~laafLkAigyliplmd~eya~yyTrevmlil~rEf~sPDeemkkivLKVv~qcc~t~Gv~~~y~ 674 (1172)
T KOG0213|consen 595 VLKPLWKGIRQHRGKELAAFLKAIGYLIPLMDAEYASYYTREVMLILIREFGSPDEEMKKIVLKVVKQCCATDGVEPAYI 674 (1172)
T ss_pred HHHHHHHHHHHccChHHHHHHHHHhhccccccHHHHHHhHHHHHHHHHHhhCCChHHHHHHHHHHHHHHhcccCCCHHHH
Confidence 3444544444444444444555555555322 222222233334445555667788899999999888876665444445
Q ss_pred hcCcHHHHHHHhccCCHHHHHHHH---------HHHHHhhCCCchhHHHHhcCChHHHHHHhcccCCCCcchHHHHHHHH
Q 001833 541 EGNVLGPLLHLVSRGDIQMKKVAV---------KALRNLSSVPQNGLQMIKEGAVGPLVDLLLHHSSSSSSLREETATAI 611 (1008)
Q Consensus 541 ~~g~i~~Lv~lL~~~~~~~~~~A~---------~aL~~L~~~~~~~~~i~~~G~v~~Ll~ll~~~~~~~~~~~~~a~~~L 611 (1008)
....+|.+..-. ..++.|. ..-..+| .+-|.-+.+-+.+.+-.++++..+..++.+.
T Consensus 675 r~dilp~ff~~f-----w~rrmA~drr~ykqlv~ttv~ia---------~KvG~~~~v~R~v~~lkde~e~yrkm~~etv 740 (1172)
T KOG0213|consen 675 RFDILPEFFFSF-----WGRRMALDRRNYKQLVDTTVEIA---------AKVGSDPIVSRVVLDLKDEPEQYRKMVAETV 740 (1172)
T ss_pred hhhhhHHHHhhh-----hhhhhhccccchhhHHHHHHHHH---------HHhCchHHHHHHhhhhccccHHHHHHHHHHH
Confidence 556666665433 2222222 1111111 1334444444444433333244455555555
Q ss_pred HHHhccccccccCCcccccccchhHHHHHHHhhccCCh--HHHHHHHHHHHHhccCCChhhHHHHhhhcCChHHHHHhhc
Q 001833 612 MHLAVSTMYQESSQTPVTLLESDKEIFMLFSLINLTGP--NVQQRILQTFNALCRSPSAGNIKTTLTQCSAIPVLVQLCE 689 (1008)
Q Consensus 612 ~nLa~~~~~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~--~v~~~al~aL~~L~~~~~~~~~~~~i~e~~~i~~Lv~ll~ 689 (1008)
.++...-....- ..-..+.-+..++..+...+. .+--....+..+-... .++. .-..++..++..|+
T Consensus 741 ~ri~~~lg~~di-----derleE~lidgil~Afqeqtt~d~vml~gfg~V~~~lg~----r~kp--ylpqi~stiL~rLn 809 (1172)
T KOG0213|consen 741 SRIVGRLGAADI-----DERLEERLIDGILYAFQEQTTEDSVMLLGFGTVVNALGG----RVKP--YLPQICSTILWRLN 809 (1172)
T ss_pred HHHHhccccccc-----cHHHHHHHHHHHHHHHHhcccchhhhhhhHHHHHHHHhh----cccc--chHHHHHHHHHHhc
Confidence 444431110000 000112334444444442221 1222222222221100 0000 00124566677889
Q ss_pred cCChhHHHHHHHHHHHhccCCChhHHHhhhcccchHH----HHHHhcCCCCHHHHHHHHHHHhcCCC---ChhhHHHHHh
Q 001833 690 HDNENVRANAVKLFCCLVDDGDEAIIREHVGQKCLET----LVTIIQSSHNEEEIASAMGILSKLPE---VPQFTQWLLD 762 (1008)
Q Consensus 690 ~~~~~v~~~a~~~L~~Ls~~~~~~~~~~~~~~~~i~~----Lv~lL~~~~~~~v~~~a~~~L~nL~~---~~~~~~~l~~ 762 (1008)
+.++.+|..|+.+++.++..- ....+...+.. |-+-|.. ..+++.-..++++..+.. -...... -
T Consensus 810 nksa~vRqqaadlis~la~Vl-----ktc~ee~~m~~lGvvLyEylge-eypEvLgsILgAikaI~nvigm~km~pP--i 881 (1172)
T KOG0213|consen 810 NKSAKVRQQAADLISSLAKVL-----KTCGEEKLMGHLGVVLYEYLGE-EYPEVLGSILGAIKAIVNVIGMTKMTPP--I 881 (1172)
T ss_pred CCChhHHHHHHHHHHHHHHHH-----HhccHHHHHHHhhHHHHHhcCc-ccHHHHHHHHHHHHHHHHhccccccCCC--h
Confidence 999999999999988886110 00001111111 2233333 445666665555555433 1111111 1
Q ss_pred cCCHHHHHHHhhCCCCCCCchhhHHHHHHHHHHHhcCCCCHH------HHHHHHHcCChHHHHHHhhcCChHHHHHHHHH
Q 001833 763 AGALPIVLNFLKNGRQNDPNRFQVVENAVGALRRFTAPTNLE------WQKRAAEAGVIPKLVQLLEYGTTLTKEHAATS 836 (1008)
Q Consensus 763 ~g~l~~Lv~lL~~~~~~~~~~~~v~~~a~~aL~~L~~~~~~~------~~~~l~~~g~l~~Lv~lL~~~~~~v~~~Aa~a 836 (1008)
.+.+|.|.-+|++ ....++++++..++.++.. .++ |.+.. =-|+++|.+.+..+|++|..+
T Consensus 882 ~dllPrltPILkn------rheKVqen~IdLvg~Iadr-gpE~v~aREWMRIc------feLlelLkahkK~iRRaa~nT 948 (1172)
T KOG0213|consen 882 KDLLPRLTPILKN------RHEKVQENCIDLVGTIADR-GPEYVSAREWMRIC------FELLELLKAHKKEIRRAAVNT 948 (1172)
T ss_pred hhhcccchHhhhh------hHHHHHHHHHHHHHHHHhc-CcccCCHHHHHHHH------HHHHHHHHHHHHHHHHHHHhh
Confidence 4678999999999 6889999999999999976 333 33332 237888888899999999999
Q ss_pred HhhhhhcCCCCCCCCCCCCcccccCCCCCCcccccCcccCcccchhHhhccchHHHHHhhcCCChhhhHHHHHHHHhhhc
Q 001833 837 LARFSKNSLGLSRPIPKRKGFWCFSPPPEIGCQVHGGLCGIESSFCLLEANAVRPLVRVLEDPDHGACEASLDALVTLIE 916 (1008)
Q Consensus 837 L~nLs~~~~~l~~~~~~~~g~~~~~~~~~~~c~vh~~~c~~~~~~~l~~~g~i~~Lv~lL~~~d~~v~~~al~aL~~L~~ 916 (1008)
++-++. .-| -..++..|++-|+.++-+.|....-|+.-..
T Consensus 949 fG~Iak-----------aIG----------------------------PqdVLatLlnnLkvqeRq~RvcTtvaIaIVa- 988 (1172)
T KOG0213|consen 949 FGYIAK-----------AIG----------------------------PQDVLATLLNNLKVQERQNRVCTTVAIAIVA- 988 (1172)
T ss_pred hhHHHH-----------hcC----------------------------HHHHHHHHHhcchHHHHHhchhhhhhhhhhh-
Confidence 999983 111 2345666777666555554433333333222
Q ss_pred ccccchhhHHHHhcCchHHHHHHhcCCChHHHHHHHHHHHHHhcCh-HHHHHhccccCchhhhhcccCCchhhHHHHHHH
Q 001833 917 GERLQNGSKVLEDANAIDRMVRFLSSPSPKLQEKALDSVERIFRLP-EFKQKYGKSAQMPLVDLTQRGNSSMKSLSARVL 995 (1008)
Q Consensus 917 ~~~~~~~~~~i~~~~~i~~l~~ll~~~~~~l~~~a~~~L~~l~~~~-~~~~~~~~~~~~~Lv~l~~~~~~~~~~~Aa~~L 995 (1008)
+. + .-...++.|++=-.-++--+|.-.+..+.-+|..- +....|--...+.|.+.+-+.|..-|+.|+.++
T Consensus 989 -E~----c---~pFtVLPalmneYrtPe~nVQnGVLkalsf~FeyigemskdYiyav~PlleDAlmDrD~vhRqta~~~I 1060 (1172)
T KOG0213|consen 989 -ET----C---GPFTVLPALMNEYRTPEANVQNGVLKALSFMFEYIGEMSKDYIYAVTPLLEDALMDRDLVHRQTAMNVI 1060 (1172)
T ss_pred -hh----c---CchhhhHHHHhhccCchhHHHHhHHHHHHHHHHHHHHHhhhHHHHhhHHHHHhhccccHHHHHHHHHHH
Confidence 00 0 01123444444444566678888888887777643 333333333445677899999999999999999
Q ss_pred HHHhcc
Q 001833 996 AHLNVL 1001 (1008)
Q Consensus 996 ~~L~~~ 1001 (1008)
+||..-
T Consensus 1061 ~Hl~Lg 1066 (1172)
T KOG0213|consen 1061 KHLALG 1066 (1172)
T ss_pred HHHhcC
Confidence 998643
No 71
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=98.41 E-value=0.00051 Score=71.60 Aligned_cols=359 Identities=14% Similarity=0.193 Sum_probs=221.3
Q ss_pred cccHHHHHHHHhcCCCCCCCcCccCCCCCCccCHhhHHHHHHHHHhcccchhhhhhhhccCcchHHHHHHHHHHHHHHhh
Q 001833 286 TFERSAIEKWFSDGNNLCPLTMTVLDTSILRPNKTLRQSIEEWKDRNTMITIASMKPKLVSTEVEEVLHCLEQLQDLCQQ 365 (1008)
Q Consensus 286 t~~r~~i~~w~~~~~~~cp~~~~~l~~~~l~pN~~l~~~I~~w~~~~~~~~~~~~~~~l~~~~~~~~~~al~~L~~l~~~ 365 (1008)
|.|-+|.++.|.... ...+.||+- +.+..-+...+.....-++.++..+-++
T Consensus 61 tlcVscLERLfkake-----------gahlapnlm-----------------pdLQrGLiaddasVKiLackqigcilEd 112 (524)
T KOG4413|consen 61 TLCVSCLERLFKAKE-----------GAHLAPNLM-----------------PDLQRGLIADDASVKILACKQIGCILED 112 (524)
T ss_pred hhHHHHHHHHHhhcc-----------chhhchhhh-----------------HHHHhcccCCcchhhhhhHhhhhHHHhc
Confidence 567788888885321 234566651 1222223333445555566666666666
Q ss_pred chhhh----hhHhhcCchHHHHHHHcCCCHHHHHHHHHHHHHhccCChhhHHHhhccCCcHHHH--HHHhcc-ChhHHHH
Q 001833 366 RDQHR----EWVILENYIPKLIYLLGSKNRDVRNRALIILHILVKDSNDTKERLANGDDAVESI--VRSLGR-RIEERKL 438 (1008)
Q Consensus 366 ~~~~r----~~i~~~g~i~~L~~lL~s~~~~~~~~Al~~L~~Ls~~~~~~k~~i~~~~g~i~~L--v~~L~~-~~~~~~~ 438 (1008)
.+.|- ..+.++|..+.++.....+|.++-..|...+..++... ..-..|.+ ....+.+ +.+-.+ +.-.|..
T Consensus 113 cDtnaVseillvvNaeilklildcIggeddeVAkAAiesikrialfp-aaleaiFe-SellDdlhlrnlaakcndiaRvR 190 (524)
T KOG4413|consen 113 CDTNAVSEILLVVNAEILKLILDCIGGEDDEVAKAAIESIKRIALFP-AALEAIFE-SELLDDLHLRNLAAKCNDIARVR 190 (524)
T ss_pred CchhhHHHHHHHhhhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcH-HHHHHhcc-cccCChHHHhHHHhhhhhHHHHH
Confidence 65442 23557889999999999999999999999999998876 44555554 3433332 222222 2223455
Q ss_pred HHHHHHHhcc-CchhhHHhhcccchHHHHHHHhcC-CChHHHHHHHHHHHhhcCCcccHHHHHhcCcHHHHHHHHhcC--
Q 001833 439 AVALLLELST-CNTLRDQIGDVQGCILLLVTMASS-DDNQASRDAQELLENLSFSDDNVVQMAKANYFKHLLQRLSAG-- 514 (1008)
Q Consensus 439 A~~~L~~Ls~-~~~~~~~i~~~~g~i~~Lv~lL~~-~~~~~~~~a~~aL~~Ls~~~~n~~~i~~~g~v~~Lv~~L~~~-- 514 (1008)
...++.++++ .++......+ .|.+..|..-++. .|.-++.+++.....|......+..+.+.|.++.+..++...
T Consensus 191 VleLIieifSiSpesaneckk-SGLldlLeaElkGteDtLVianciElvteLaeteHgreflaQeglIdlicnIIsGads 269 (524)
T KOG4413|consen 191 VLELIIEIFSISPESANECKK-SGLLDLLEAELKGTEDTLVIANCIELVTELAETEHGREFLAQEGLIDLICNIISGADS 269 (524)
T ss_pred HHHHHHHHHhcCHHHHhHhhh-hhHHHHHHHHhcCCcceeehhhHHHHHHHHHHHhhhhhhcchhhHHHHHHHHhhCCCC
Confidence 5666666644 4454444443 7888888777775 788899999999999998888899999999999998887643
Q ss_pred CHHHHHHHHHHHHHHcCC----hhhHHHHhh--cCcHHHHHHHhccCCHHHHHHHHHHHHHhhCCCchhHHHHhcCC--h
Q 001833 515 PESVKMRMATTLAEMELT----DHHKASLLE--GNVLGPLLHLVSRGDIQMKKVAVKALRNLSSVPQNGLQMIKEGA--V 586 (1008)
Q Consensus 515 ~~~~~~~aa~~L~~Ls~~----~~~k~~i~~--~g~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~~~~~~~i~~~G~--v 586 (1008)
++-.+..++...+.+-.. +-.-..+.+ .-+|..-.+++...+|...+.|..+++.|.++.+..+.+...|- .
T Consensus 270 dPfekfralmgfgkffgkeaimdvseeaicealiiaidgsfEmiEmnDpdaieaAiDalGilGSnteGadlllkTgppaa 349 (524)
T KOG4413|consen 270 DPFEKFRALMGFGKFFGKEAIMDVSEEAICEALIIAIDGSFEMIEMNDPDAIEAAIDALGILGSNTEGADLLLKTGPPAA 349 (524)
T ss_pred CcHHHHHHHHHHHHHhcchHHhhcCHHHHHHHHHHHHHhhHHhhhcCCchHHHHHHHHHHhccCCcchhHHHhccCChHH
Confidence 333444455555544222 111111211 12344455677888999999999999999998888888777653 4
Q ss_pred HHHHHHhcccCCCCcchHHHHHHHHHHHhccccccccCCcccccccchhHHHHHHHhhccCChHHHHHHHHHHHHhccCC
Q 001833 587 GPLVDLLLHHSSSSSSLREETATAIMHLAVSTMYQESSQTPVTLLESDKEIFMLFSLINLTGPNVQQRILQTFNALCRSP 666 (1008)
Q Consensus 587 ~~Ll~ll~~~~~~~~~~~~~a~~~L~nLa~~~~~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~aL~~L~~~~ 666 (1008)
..++.-..+.+. ..-++.+..+|.++++.--.... .+....+.. .+++. .+..++++.
T Consensus 350 ehllarafdqna--hakqeaaihaLaaIagelrlkpe------qitDgkaee-----------rlrcl---ifdaaaqst 407 (524)
T KOG4413|consen 350 EHLLARAFDQNA--HAKQEAAIHALAAIAGELRLKPE------QITDGKAEE-----------RLRCL---IFDAAAQST 407 (524)
T ss_pred HHHHHHHhcccc--cchHHHHHHHHHHhhccccCChh------hccccHHHH-----------HHHHH---HHHHHhhcc
Confidence 444443333332 23478888899998863211110 011000000 11111 122222221
Q ss_pred ChhhHHHHhhhcCChHHHHHhhccCChhHHHHHHHHHHHhc
Q 001833 667 SAGNIKTTLTQCSAIPVLVQLCEHDNENVRANAVKLFCCLV 707 (1008)
Q Consensus 667 ~~~~~~~~i~e~~~i~~Lv~ll~~~~~~v~~~a~~~L~~Ls 707 (1008)
. ..-...+...++.+.++++.++.+.+..++
T Consensus 408 k----------ldPleLFlgilqQpfpEihcAalktfTAia 438 (524)
T KOG4413|consen 408 K----------LDPLELFLGILQQPFPEIHCAALKTFTAIA 438 (524)
T ss_pred C----------CChHHHHHHHHcCCChhhHHHHHHHHHHHH
Confidence 1 123567778888999999999999998887
No 72
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.34 E-value=0.00017 Score=74.89 Aligned_cols=295 Identities=18% Similarity=0.184 Sum_probs=187.4
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhccCChhhHHHhhccCCcHHHHHHHhccChhHHHHHHHHHHHhccCchhhHHhhcc
Q 001833 380 PKLIYLLGSKNRDVRNRALIILHILVKDSNDTKERLANGDDAVESIVRSLGRRIEERKLAVALLLELSTCNTLRDQIGDV 459 (1008)
Q Consensus 380 ~~L~~lL~s~~~~~~~~Al~~L~~Ls~~~~~~k~~i~~~~g~i~~Lv~~L~~~~~~~~~A~~~L~~Ls~~~~~~~~i~~~ 459 (1008)
..++++|.+.++.+|..|+..+..|+.. ..+.......-.++.+.+++..... .+.|+..|.++|.++..+..+...
T Consensus 6 ~elv~ll~~~sP~v~~~AV~~l~~lt~~--~~~~~~~~~~~~lk~l~qL~~~~~~-~~~a~~alVnlsq~~~l~~~ll~~ 82 (353)
T KOG2973|consen 6 VELVELLHSLSPPVRKAAVEHLLGLTGR--GLQSLSKYSEALLKDLTQLLKDLDP-AEPAATALVNLSQKEELRKKLLQD 82 (353)
T ss_pred HHHHHHhccCChHHHHHHHHHHhhcccc--chhhhccchhhhHHHHHHHccCccc-ccHHHHHHHHHHhhHHHHHHHHHH
Confidence 3578899999999999999999888776 2222222213355666677655433 678999999999999999999863
Q ss_pred cchHHHHHHHhcCCChHHHHHHHHHHHhhcCCcccHHHHHh-------cCcHHHHHHHHhcCCH--HHHHHHHHHHHHHc
Q 001833 460 QGCILLLVTMASSDDNQASRDAQELLENLSFSDDNVVQMAK-------ANYFKHLLQRLSAGPE--SVKMRMATTLAEME 530 (1008)
Q Consensus 460 ~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~~~n~~~i~~-------~g~v~~Lv~~L~~~~~--~~~~~aa~~L~~Ls 530 (1008)
.+..++.++.++....-...+..|.||+..+.....+.. .|.+.........+.. .--...+.++.+++
T Consensus 83 --~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~vf~nls 160 (353)
T KOG2973|consen 83 --LLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPVFANLS 160 (353)
T ss_pred --HHHHHHHHhcCcccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHHHHHHHHHh
Confidence 888888888877666677788999999988776544422 3444444444443322 22355778889999
Q ss_pred CChhhHHHHhhcCcHH--HHHHHhccCCHHHHHHHHHHHHHhhCCCchhHHHHhcC--ChHHHHHHhcccCCCCcchHHH
Q 001833 531 LTDHHKASLLEGNVLG--PLLHLVSRGDIQMKKVAVKALRNLSSVPQNGLQMIKEG--AVGPLVDLLLHHSSSSSSLREE 606 (1008)
Q Consensus 531 ~~~~~k~~i~~~g~i~--~Lv~lL~~~~~~~~~~A~~aL~~L~~~~~~~~~i~~~G--~v~~Ll~ll~~~~~~~~~~~~~ 606 (1008)
....+|..+.....++ .++.+-..++.--+...++.|.|.|-...+...++..+ .+|.++-=+.....- --+.
T Consensus 161 ~~~~gR~l~~~~k~~p~~kll~ft~~~s~vRr~GvagtlkN~cFd~~~h~~lL~e~~~lLp~iLlPlagpee~---sEEd 237 (353)
T KOG2973|consen 161 QFEAGRKLLLEPKRFPDQKLLPFTSEDSQVRRGGVAGTLKNCCFDAKLHEVLLDESINLLPAILLPLAGPEEL---SEED 237 (353)
T ss_pred hhhhhhhHhcchhhhhHhhhhcccccchhhhccchHHHHHhhhccchhHHHHhcchHHHHHHHHhhcCCcccc---CHHH
Confidence 9999998877666332 33344442333344566899999998888888877632 344444333322210 0011
Q ss_pred HHHHHHHHhccccccccCCcccccccchhHHHHHHHhhccCChHHHHHHHHHHHHhccCCChhhHHHHhhhcCChHHHHH
Q 001833 607 TATAIMHLAVSTMYQESSQTPVTLLESDKEIFMLFSLINLTGPNVQQRILQTFNALCRSPSAGNIKTTLTQCSAIPVLVQ 686 (1008)
Q Consensus 607 a~~~L~nLa~~~~~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~aL~~L~~~~~~~~~~~~i~e~~~i~~Lv~ 686 (1008)
....=-.|-.-++.++ ..++|+++...+.+|.-||.. ..-|..++..|+-+.+-.
T Consensus 238 m~~LP~eLQyLp~dKe----------------------RepdpdIrk~llEai~lLcaT---~~GRe~lR~kgvYpilRE 292 (353)
T KOG2973|consen 238 MAKLPVELQYLPEDKE----------------------REPDPDIRKMLLEALLLLCAT---RAGREVLRSKGVYPILRE 292 (353)
T ss_pred HhcCCHhhhcCCcccc----------------------CCCChHHHHHHHHHHHHHHhh---hHhHHHHHhcCchHHHHH
Confidence 1111111111111111 136889999999999999974 456778888775554444
Q ss_pred hhccC-ChhHHHHHHHHHHHhc
Q 001833 687 LCEHD-NENVRANAVKLFCCLV 707 (1008)
Q Consensus 687 ll~~~-~~~v~~~a~~~L~~Ls 707 (1008)
+=... +++++..+-.....|.
T Consensus 293 lhk~e~ded~~~ace~vvq~Lv 314 (353)
T KOG2973|consen 293 LHKWEEDEDIREACEQVVQMLV 314 (353)
T ss_pred HhcCCCcHHHHHHHHHHHHHHH
Confidence 43333 6777776666666665
No 73
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=98.32 E-value=8.8e-05 Score=84.00 Aligned_cols=242 Identities=14% Similarity=0.021 Sum_probs=173.6
Q ss_pred cCcHHHHHHHHh-cCCHHHHHHHHHHHHHHcCChhhHHHHhhcCcHHHHHHHhccCCHHHHHHHHHHHHHhhCCCchhHH
Q 001833 501 ANYFKHLLQRLS-AGPESVKMRMATTLAEMELTDHHKASLLEGNVLGPLLHLVSRGDIQMKKVAVKALRNLSSVPQNGLQ 579 (1008)
Q Consensus 501 ~g~v~~Lv~~L~-~~~~~~~~~aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~~~~~~~ 579 (1008)
..+++.++..|. .++.+++..++.++.... ...++..|++.|.+.++.++..++.+|..+-
T Consensus 53 ~~a~~~L~~aL~~d~~~ev~~~aa~al~~~~----------~~~~~~~L~~~L~d~~~~vr~aaa~ALg~i~-------- 114 (410)
T TIGR02270 53 KAATELLVSALAEADEPGRVACAALALLAQE----------DALDLRSVLAVLQAGPEGLCAGIQAALGWLG-------- 114 (410)
T ss_pred HhHHHHHHHHHhhCCChhHHHHHHHHHhccC----------ChHHHHHHHHHhcCCCHHHHHHHHHHHhcCC--------
Confidence 456788888885 455677666555553311 1123889999999999999999999998663
Q ss_pred HHhcCChHHHHHHhcccCCCCcchHHHHHHHHHHHhccccccccCCcccccccchhHHHHHHHhhccCChHHHHHHHHHH
Q 001833 580 MIKEGAVGPLVDLLLHHSSSSSSLREETATAIMHLAVSTMYQESSQTPVTLLESDKEIFMLFSLINLTGPNVQQRILQTF 659 (1008)
Q Consensus 580 i~~~G~v~~Ll~ll~~~~~~~~~~~~~a~~~L~nLa~~~~~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~aL 659 (1008)
..+..+.|+.++.+.+ +.++..++.++.... ......+..++++.++.++..++++|
T Consensus 115 --~~~a~~~L~~~L~~~~---p~vR~aal~al~~r~------------------~~~~~~L~~~L~d~d~~Vra~A~raL 171 (410)
T TIGR02270 115 --GRQAEPWLEPLLAASE---PPGRAIGLAALGAHR------------------HDPGPALEAALTHEDALVRAAALRAL 171 (410)
T ss_pred --chHHHHHHHHHhcCCC---hHHHHHHHHHHHhhc------------------cChHHHHHHHhcCCCHHHHHHHHHHH
Confidence 2456788999996554 667777777666532 23456788889999999999999999
Q ss_pred HHhccCCChhhHHHHhhhcCChHHHHHhhccCChhHHHHHHHHHHHhccCCChhHHHhhhcccchHHHHHHhcCCCCHHH
Q 001833 660 NALCRSPSAGNIKTTLTQCSAIPVLVQLCEHDNENVRANAVKLFCCLVDDGDEAIIREHVGQKCLETLVTIIQSSHNEEE 739 (1008)
Q Consensus 660 ~~L~~~~~~~~~~~~i~e~~~i~~Lv~ll~~~~~~v~~~a~~~L~~Ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~v 739 (1008)
..+... ..++.|...+.+.++.+|..|+.++..+- ....+..+......... ..
T Consensus 172 G~l~~~-------------~a~~~L~~al~d~~~~VR~aA~~al~~lG------------~~~A~~~l~~~~~~~g~-~~ 225 (410)
T TIGR02270 172 GELPRR-------------LSESTLRLYLRDSDPEVRFAALEAGLLAG------------SRLAWGVCRRFQVLEGG-PH 225 (410)
T ss_pred Hhhccc-------------cchHHHHHHHcCCCHHHHHHHHHHHHHcC------------CHhHHHHHHHHHhccCc-cH
Confidence 988652 46788889999999999999999997774 11344555553333222 23
Q ss_pred HHHHHHHHhcCCCChhhHHHHHhcCCHHHHHHHhhCCCCCCCchhhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHH
Q 001833 740 IASAMGILSKLPEVPQFTQWLLDAGALPIVLNFLKNGRQNDPNRFQVVENAVGALRRFTAPTNLEWQKRAAEAGVIPKLV 819 (1008)
Q Consensus 740 ~~~a~~~L~nL~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~v~~~a~~aL~~L~~~~~~~~~~~l~~~g~l~~Lv 819 (1008)
...+..+++... ...+++.|..++++ +.+++.++.+++.+-. ...++.|+
T Consensus 226 ~~~l~~~lal~~----------~~~a~~~L~~ll~d--------~~vr~~a~~AlG~lg~------------p~av~~L~ 275 (410)
T TIGR02270 226 RQRLLVLLAVAG----------GPDAQAWLRELLQA--------AATRREALRAVGLVGD------------VEAAPWCL 275 (410)
T ss_pred HHHHHHHHHhCC----------chhHHHHHHHHhcC--------hhhHHHHHHHHHHcCC------------cchHHHHH
Confidence 333444444432 12567888899887 2389999999998776 34678888
Q ss_pred HHhhcCChHHHHHHHHHHhhhh
Q 001833 820 QLLEYGTTLTKEHAATSLARFS 841 (1008)
Q Consensus 820 ~lL~~~~~~v~~~Aa~aL~nLs 841 (1008)
..+.+. .++..|..++..++
T Consensus 276 ~~l~d~--~~aR~A~eA~~~It 295 (410)
T TIGR02270 276 EAMREP--PWARLAGEAFSLIT 295 (410)
T ss_pred HHhcCc--HHHHHHHHHHHHhh
Confidence 888744 49999999999998
No 74
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.32 E-value=2.5e-05 Score=83.59 Aligned_cols=186 Identities=15% Similarity=0.130 Sum_probs=155.6
Q ss_pred CChHHHHHHHHHHHHhccCCChhhHHHHhhhcCChHHHHHhhccCChhHHHHHHHHHHHhccCCChhHHHhhhcccchHH
Q 001833 647 TGPNVQQRILQTFNALCRSPSAGNIKTTLTQCSAIPVLVQLCEHDNENVRANAVKLFCCLVDDGDEAIIREHVGQKCLET 726 (1008)
Q Consensus 647 ~~~~v~~~al~aL~~L~~~~~~~~~~~~i~e~~~i~~Lv~ll~~~~~~v~~~a~~~L~~Ls~~~~~~~~~~~~~~~~i~~ 726 (1008)
.+++-++.++.-|..++.+ -+....+...|++..++..+++++.++|..|++++...+ ..++.....+++.++.+.
T Consensus 95 ~~le~ke~ald~Le~lve~---iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~-qNNP~~Qe~v~E~~~L~~ 170 (342)
T KOG2160|consen 95 VDLEDKEDALDNLEELVED---IDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAV-QNNPKSQEQVIELGALSK 170 (342)
T ss_pred CCHHHHHHHHHHHHHHHHh---hhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHH-hcCHHHHHHHHHcccHHH
Confidence 4566667777777777753 344456778899999999999999999999999999998 667777788899999999
Q ss_pred HHHHhcCCCCHHHHHHHHHHHhcCCC-ChhhHHHHHhcCCHHHHHHHhhCCCCCCCchhhHHHHHHHHHHHhcCCCCHHH
Q 001833 727 LVTIIQSSHNEEEIASAMGILSKLPE-VPQFTQWLLDAGALPIVLNFLKNGRQNDPNRFQVVENAVGALRRFTAPTNLEW 805 (1008)
Q Consensus 727 Lv~lL~~~~~~~v~~~a~~~L~nL~~-~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~v~~~a~~aL~~L~~~~~~~~ 805 (1008)
|+..+.+..+..++..|+.+++.|.. ++.....+...++...|...+.++. .+..++..++..+..+... +...
T Consensus 171 Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~----~~~~lkrK~~~Ll~~Ll~~-~~s~ 245 (342)
T KOG2160|consen 171 LLKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNN----TSVKLKRKALFLLSLLLQE-DKSD 245 (342)
T ss_pred HHHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCC----cchHHHHHHHHHHHHHHHh-hhhh
Confidence 99999987777889999999999988 7778888888999999999999954 5678899999999999986 5555
Q ss_pred HHHHHHcCChHHHHHHhhcCChHHHHHHHHHHhhhh
Q 001833 806 QKRAAEAGVIPKLVQLLEYGTTLTKEHAATSLARFS 841 (1008)
Q Consensus 806 ~~~l~~~g~l~~Lv~lL~~~~~~v~~~Aa~aL~nLs 841 (1008)
...+...++-..+..+....+.+++..+..++..+.
T Consensus 246 ~d~~~~~~f~~~~~~l~~~l~~~~~e~~l~~~l~~l 281 (342)
T KOG2160|consen 246 EDIASSLGFQRVLENLISSLDFEVNEAALTALLSLL 281 (342)
T ss_pred hhHHHHhhhhHHHHHHhhccchhhhHHHHHHHHHHH
Confidence 556667777777888888888899999999888776
No 75
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=98.31 E-value=3e-07 Score=67.22 Aligned_cols=36 Identities=25% Similarity=0.649 Sum_probs=23.2
Q ss_pred ccccccccCC----ceeccCcccccHHHHHHHHhcC---CCCCC
Q 001833 268 CPITRDVMVD----PVETSSGQTFERSAIEKWFSDG---NNLCP 304 (1008)
Q Consensus 268 cpi~~~~m~d----pv~~~~g~t~~r~~i~~w~~~~---~~~cp 304 (1008)
||||++ |.+ |++++|||+|++.||++|+..+ ...||
T Consensus 1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l~~~~~~~~~kCP 43 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKLSKKSDRNRFKCP 43 (43)
T ss_dssp -TTT-----TTSS-EEE-SSS-EEEHHHHHHHHHH-S-S-B--T
T ss_pred CCcccc-ccCCCCCCEEEeCccHHHHHHHHHHHhcCCCCeeeCc
Confidence 999999 999 9999999999999999999854 34566
No 76
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=98.28 E-value=0.001 Score=69.42 Aligned_cols=356 Identities=15% Similarity=0.145 Sum_probs=229.2
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHhhcC-Cccc----HHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHHcCChhhHHH
Q 001833 464 LLLVTMASSDDNQASRDAQELLENLSF-SDDN----VVQMAKANYFKHLLQRLSAGPESVKMRMATTLAEMELTDHHKAS 538 (1008)
Q Consensus 464 ~~Lv~lL~~~~~~~~~~a~~aL~~Ls~-~~~n----~~~i~~~g~v~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~~~~k~~ 538 (1008)
+.|-.=|..+|..++..++..+..+.. .+.| ...++++|+++.++..+-..+.++...|...+..++..+..-..
T Consensus 85 pdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIggeddeVAkAAiesikrialfpaalea 164 (524)
T KOG4413|consen 85 PDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGEDDEVAKAAIESIKRIALFPAALEA 164 (524)
T ss_pred HHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcHHHHHH
Confidence 333333445677777777777766653 3323 44567899999999999988999999999999999999999999
Q ss_pred HhhcCcHHHH--HHHhccCCHHHHHHHHHHHHHhhC-CCchhHHHHhcCChHHHHHHhcccCCCCcchHHHHHHHHHHHh
Q 001833 539 LLEGNVLGPL--LHLVSRGDIQMKKVAVKALRNLSS-VPQNGLQMIKEGAVGPLVDLLLHHSSSSSSLREETATAIMHLA 615 (1008)
Q Consensus 539 i~~~g~i~~L--v~lL~~~~~~~~~~A~~aL~~L~~-~~~~~~~i~~~G~v~~Ll~ll~~~~~~~~~~~~~a~~~L~nLa 615 (1008)
+..+.....+ ..+-...+.-++......+..+.+ +++........|.+..|..-|....+ .-+..++......|+
T Consensus 165 iFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGteD--tLVianciElvteLa 242 (524)
T KOG4413|consen 165 IFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGTED--TLVIANCIELVTELA 242 (524)
T ss_pred hcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCCcc--eeehhhHHHHHHHHH
Confidence 9888776554 444444556677777777888875 66777777788999888888875332 567888999999998
Q ss_pred ccccccccCCcccccccchhHHHHHHHhhccCC--hHHHHHHHHHHHHhccCC-----ChhhHHHHhhhcCChHHHHHhh
Q 001833 616 VSTMYQESSQTPVTLLESDKEIFMLFSLINLTG--PNVQQRILQTFNALCRSP-----SAGNIKTTLTQCSAIPVLVQLC 688 (1008)
Q Consensus 616 ~~~~~~~~~~~~~~~l~~~~~i~~L~~ll~~~~--~~v~~~al~aL~~L~~~~-----~~~~~~~~i~e~~~i~~Lv~ll 688 (1008)
....+++ .+..++.|..+...+...+ |--.-.++..+..+-... ....+..... -++...++++
T Consensus 243 eteHgre-------flaQeglIdlicnIIsGadsdPfekfralmgfgkffgkeaimdvseeaiceali--iaidgsfEmi 313 (524)
T KOG4413|consen 243 ETEHGRE-------FLAQEGLIDLICNIISGADSDPFEKFRALMGFGKFFGKEAIMDVSEEAICEALI--IAIDGSFEMI 313 (524)
T ss_pred HHhhhhh-------hcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhcchHHhhcCHHHHHHHHH--HHHHhhHHhh
Confidence 8766655 5778899999999998544 433333444444443321 0111111111 1345566788
Q ss_pred ccCChhHHHHHHHHHHHhccCCChhHHHhhhccc--chHHHHHHhcCCCCHHHHHHHHHHHhcCCC----Chhh------
Q 001833 689 EHDNENVRANAVKLFCCLVDDGDEAIIREHVGQK--CLETLVTIIQSSHNEEEIASAMGILSKLPE----VPQF------ 756 (1008)
Q Consensus 689 ~~~~~~v~~~a~~~L~~Ls~~~~~~~~~~~~~~~--~i~~Lv~lL~~~~~~~v~~~a~~~L~nL~~----~~~~------ 756 (1008)
+..++..+..|+.++..|-+.... .+.+.+.| ....++.-..+.+...-+..++++|.+++. .++.
T Consensus 314 EmnDpdaieaAiDalGilGSnteG--adlllkTgppaaehllarafdqnahakqeaaihaLaaIagelrlkpeqitDgka 391 (524)
T KOG4413|consen 314 EMNDPDAIEAAIDALGILGSNTEG--ADLLLKTGPPAAEHLLARAFDQNAHAKQEAAIHALAAIAGELRLKPEQITDGKA 391 (524)
T ss_pred hcCCchHHHHHHHHHHhccCCcch--hHHHhccCChHHHHHHHHHhcccccchHHHHHHHHHHhhccccCChhhccccHH
Confidence 888999999999999999633322 22222222 344444433333322345677778877765 2211
Q ss_pred ----HHHHHhc-------CCHHHHHHHhhCCCCCCCchhhHHHHHHHHHHHhcCCCCHHH-HHHHHHcCChHHHHHHhhc
Q 001833 757 ----TQWLLDA-------GALPIVLNFLKNGRQNDPNRFQVVENAVGALRRFTAPTNLEW-QKRAAEAGVIPKLVQLLEY 824 (1008)
Q Consensus 757 ----~~~l~~~-------g~l~~Lv~lL~~~~~~~~~~~~v~~~a~~aL~~L~~~~~~~~-~~~l~~~g~l~~Lv~lL~~ 824 (1008)
+..+.++ .-+..+...+++ +.++++-++..++..++. .|=. ...+.+.|++..+++--..
T Consensus 392 eerlrclifdaaaqstkldPleLFlgilqQ------pfpEihcAalktfTAiaa--qPWalkeifakeefieiVtDastE 463 (524)
T KOG4413|consen 392 EERLRCLIFDAAAQSTKLDPLELFLGILQQ------PFPEIHCAALKTFTAIAA--QPWALKEIFAKEEFIEIVTDASTE 463 (524)
T ss_pred HHHHHHHHHHHHhhccCCChHHHHHHHHcC------CChhhHHHHHHHHHHHHc--CcHHHHHHhcCccceeeecccchh
Confidence 1112221 233455566666 568899999999999887 3433 3345567877776654432
Q ss_pred C---ChHHHHHHHHHHhhh
Q 001833 825 G---TTLTKEHAATSLARF 840 (1008)
Q Consensus 825 ~---~~~v~~~Aa~aL~nL 840 (1008)
. ..+.+.++|.++.+-
T Consensus 464 haKaakdAkYeccKAiaea 482 (524)
T KOG4413|consen 464 HAKAAKDAKYECCKAIAEA 482 (524)
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 2 236677777777663
No 77
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=98.28 E-value=0.013 Score=65.93 Aligned_cols=534 Identities=14% Similarity=0.104 Sum_probs=284.5
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHhccCChhhHHHhhccCCcHHHH----HHHhccC--hhHHHHHHHHHHHhccCchhhHH
Q 001833 382 LIYLLGSKNRDVRNRALIILHILVKDSNDTKERLANGDDAVESI----VRSLGRR--IEERKLAVALLLELSTCNTLRDQ 455 (1008)
Q Consensus 382 L~~lL~s~~~~~~~~Al~~L~~Ls~~~~~~k~~i~~~~g~i~~L----v~~L~~~--~~~~~~A~~~L~~Ls~~~~~~~~ 455 (1008)
....|.+..+.....|...+..++.-+ +. .|..|-+ ++....+ ......++.++.+.+....-...
T Consensus 99 al~aL~s~epr~~~~Aaql~aaIA~~E------lp--~~~wp~lm~~mv~nvg~eqp~~~k~~sl~~~gy~ces~~Pe~l 170 (858)
T COG5215 99 ALRALKSPEPRFCTMAAQLLAAIARME------LP--NSLWPGLMEEMVRNVGDEQPVSGKCESLGICGYHCESEAPEDL 170 (858)
T ss_pred HHHHhcCCccHHHHHHHHHHHHHHHhh------Cc--cccchHHHHHHHHhccccCchHhHHHHHHHHHHHhhccCHHHH
Confidence 345577777777778888887776433 11 2444444 4443332 33466778888887543222222
Q ss_pred hhcccchHHHHHH-Hhc-CCChHHHHHHHHHHHhhc-CCcccHHHHHhcC-cHHHHHHHHhcCCHHHHHHHHHHHHHHcC
Q 001833 456 IGDVQGCILLLVT-MAS-SDDNQASRDAQELLENLS-FSDDNVVQMAKAN-YFKHLLQRLSAGPESVKMRMATTLAEMEL 531 (1008)
Q Consensus 456 i~~~~g~i~~Lv~-lL~-~~~~~~~~~a~~aL~~Ls-~~~~n~~~i~~~g-~v~~Lv~~L~~~~~~~~~~aa~~L~~Ls~ 531 (1008)
+.....++..+|. .++ ..+..++..|+.+|.+-+ .-.+|-..--+.+ .+....+.-...+.+++..+...|..+..
T Consensus 171 i~~sN~il~aiv~ga~k~et~~avRLaaL~aL~dsl~fv~~nf~~E~erNy~mqvvceatq~~d~e~q~aafgCl~kim~ 250 (858)
T COG5215 171 IQMSNVILFAIVMGALKNETTSAVRLAALKALMDSLMFVQGNFCYEEERNYFMQVVCEATQGNDEELQHAAFGCLNKIMM 250 (858)
T ss_pred HHHhhHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHhhcchhhhchhheeeehhccCCcHHHHHHHHHHHHHHHH
Confidence 3222233333333 333 346788889999998732 1111111001111 12223344455577888888888887633
Q ss_pred -ChhhHHHHhhcCcHHHHHHHhccCCHHHHHHHHHHHHHhhCCC-c--------------hh--HHHHhcCChHHHHHHh
Q 001833 532 -TDHHKASLLEGNVLGPLLHLVSRGDIQMKKVAVKALRNLSSVP-Q--------------NG--LQMIKEGAVGPLVDLL 593 (1008)
Q Consensus 532 -~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~~-~--------------~~--~~i~~~G~v~~Ll~ll 593 (1008)
.-..-..+.+..........+.+.+..+.-.|...-..+|... + |. .+..-+.++|.|+.+|
T Consensus 251 LyY~fm~~ymE~aL~alt~~~mks~nd~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL 330 (858)
T COG5215 251 LYYKFMQSYMENALAALTGRFMKSQNDEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLL 330 (858)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHH
Confidence 2222223334444455567788888888888887666666311 0 00 1111234799999999
Q ss_pred cccCCC----CcchHHHHHHHHHHHhccccccccCCcccccccchhHHHHHHHhhc----cCChHHHHHHHHHHHHhccC
Q 001833 594 LHHSSS----SSSLREETATAIMHLAVSTMYQESSQTPVTLLESDKEIFMLFSLIN----LTGPNVQQRILQTFNALCRS 665 (1008)
Q Consensus 594 ~~~~~~----~~~~~~~a~~~L~nLa~~~~~~~~~~~~~~~l~~~~~i~~L~~ll~----~~~~~v~~~al~aL~~L~~~ 665 (1008)
.....+ +=.....|..+|.-.+. +..+..+.+.+..+. +.+-.-++.++.++..+...
T Consensus 331 ~~q~ed~~~DdWn~smaA~sCLqlfaq--------------~~gd~i~~pVl~FvEqni~~~~w~nreaavmAfGSvm~g 396 (858)
T COG5215 331 EKQGEDYYGDDWNPSMAASSCLQLFAQ--------------LKGDKIMRPVLGFVEQNIRSESWANREAAVMAFGSVMHG 396 (858)
T ss_pred HhcCCCccccccchhhhHHHHHHHHHH--------------HhhhHhHHHHHHHHHHhccCchhhhHHHHHHHhhhhhcC
Confidence 863221 11233344444444332 222344555555544 56667788999999999887
Q ss_pred CChhhHHHHhhhcCChHHHHHhhccCChhHHHHHHHHHHHhccCCChhHHHhhhcc-cchHHHHHHhcCC--CCHHHHHH
Q 001833 666 PSAGNIKTTLTQCSAIPVLVQLCEHDNENVRANAVKLFCCLVDDGDEAIIREHVGQ-KCLETLVTIIQSS--HNEEEIAS 742 (1008)
Q Consensus 666 ~~~~~~~~~i~e~~~i~~Lv~ll~~~~~~v~~~a~~~L~~Ls~~~~~~~~~~~~~~-~~i~~Lv~lL~~~--~~~~v~~~ 742 (1008)
|. ...+..+.. .++|.+..++.++.--++..++|+++.++ +.- ...+.. +-++..++-+.-+ +.+.+...
T Consensus 397 p~-~~~lT~~V~-qalp~i~n~m~D~~l~vk~ttAwc~g~ia-d~v----a~~i~p~~Hl~~~vsa~liGl~D~p~~~~n 469 (858)
T COG5215 397 PC-EDCLTKIVP-QALPGIENEMSDSCLWVKSTTAWCFGAIA-DHV----AMIISPCGHLVLEVSASLIGLMDCPFRSIN 469 (858)
T ss_pred cc-HHHHHhhHH-hhhHHHHHhcccceeehhhHHHHHHHHHH-HHH----HHhcCccccccHHHHHHHhhhhccchHHhh
Confidence 54 333433333 46888888888777888999999999997 322 222221 2233222221111 23455667
Q ss_pred HHHHHhcCCC-ChhhHH--HHHhcCCHHHHHHHhhCCCCCCCchhhHHHHHHHHHHHhcCCCCHHHH-HHHHH-------
Q 001833 743 AMGILSKLPE-VPQFTQ--WLLDAGALPIVLNFLKNGRQNDPNRFQVVENAVGALRRFTAPTNLEWQ-KRAAE------- 811 (1008)
Q Consensus 743 a~~~L~nL~~-~~~~~~--~l~~~g~l~~Lv~lL~~~~~~~~~~~~v~~~a~~aL~~L~~~~~~~~~-~~l~~------- 811 (1008)
+.+..-||+. -+.... .-.-....+.+++.|-.+......+...|..+..+|+.|... .++.. ..+..
T Consensus 470 csw~~~nlv~h~a~a~~~~~S~l~~fY~ai~~~Lv~~t~~~~Ne~n~R~s~fsaLgtli~~-~~d~V~~~~a~~~~~~~~ 548 (858)
T COG5215 470 CSWRKENLVDHIAKAVREVESFLAKFYLAILNALVKGTELALNESNLRVSLFSALGTLILI-CPDAVSDILAGFYDYTSK 548 (858)
T ss_pred hHHHHHhHHHhhhhhhccccchhHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhh-cchhHHHHHHHHHHHHHH
Confidence 7788777765 111110 000122334444444332211114566777777788777654 23322 11110
Q ss_pred --cCChHHHHHHhhcC----ChHHHHHHHHHHhhhhhcCCCCCCCCCCCCcccccCCCCCCcccccCcccCcccchhHhh
Q 001833 812 --AGVIPKLVQLLEYG----TTLTKEHAATSLARFSKNSLGLSRPIPKRKGFWCFSPPPEIGCQVHGGLCGIESSFCLLE 885 (1008)
Q Consensus 812 --~g~l~~Lv~lL~~~----~~~v~~~Aa~aL~nLs~~~~~l~~~~~~~~g~~~~~~~~~~~c~vh~~~c~~~~~~~l~~ 885 (1008)
...+.++-+.+... ..+++.+-+..|..+.+..+. +.+. ++
T Consensus 549 kl~~~isv~~q~l~~eD~~~~~elqSN~~~vl~aiir~~~~-----------------------------~ie~----v~ 595 (858)
T COG5215 549 KLDECISVLGQILATEDQLLVEELQSNYIGVLEAIIRTRRR-----------------------------DIED----VE 595 (858)
T ss_pred HHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCC-----------------------------Cccc----HH
Confidence 11222333233221 236777777777777643321 1111 12
Q ss_pred ccchHHHHHhhcCCChh-hhHHHHHHHHhhh--cccccchhhHHHHhcCchHHHHHHhcCCChHHHHHHHHHHHHHhcCh
Q 001833 886 ANAVRPLVRVLEDPDHG-ACEASLDALVTLI--EGERLQNGSKVLEDANAIDRMVRFLSSPSPKLQEKALDSVERIFRLP 962 (1008)
Q Consensus 886 ~g~i~~Lv~lL~~~d~~-v~~~al~aL~~L~--~~~~~~~~~~~i~~~~~i~~l~~ll~~~~~~l~~~a~~~L~~l~~~~ 962 (1008)
--.+..++++|+..++. +..-...|+.+|. .++.++.+. ...++.+.+-++..+..+-..|+.++..+.+.-
T Consensus 596 D~lm~Lf~r~les~~~t~~~~dV~~aIsal~~sl~e~Fe~y~-----~~fiPyl~~aln~~d~~v~~~avglvgdlantl 670 (858)
T COG5215 596 DQLMELFIRILESTKPTTAFGDVYTAISALSTSLEERFEQYA-----SKFIPYLTRALNCTDRFVLNSAVGLVGDLANTL 670 (858)
T ss_pred HHHHHHHHHHHhccCCchhhhHHHHHHHHHHHHHHHHHHHHH-----hhhhHHHHHHhcchhHHHHHHHHHHHHHHHHHh
Confidence 23567788999877554 4555566666666 222233333 234777888887778888888888887775432
Q ss_pred H-HHHHhccccCchhhhhcccC
Q 001833 963 E-FKQKYGKSAQMPLVDLTQRG 983 (1008)
Q Consensus 963 ~-~~~~~~~~~~~~Lv~l~~~~ 983 (1008)
+ --..|+......|++.+++.
T Consensus 671 ~~df~~y~d~~ms~LvQ~lss~ 692 (858)
T COG5215 671 GTDFNIYADVLMSSLVQCLSSE 692 (858)
T ss_pred hhhHHHHHHHHHHHHHHHhcCh
Confidence 2 11234444445677776663
No 78
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=98.28 E-value=5.1e-07 Score=65.49 Aligned_cols=38 Identities=42% Similarity=0.844 Sum_probs=32.7
Q ss_pred ccccccccCCc-eeccCcccccHHHHHHHHhcCCCCCCCc
Q 001833 268 CPITRDVMVDP-VETSSGQTFERSAIEKWFSDGNNLCPLT 306 (1008)
Q Consensus 268 cpi~~~~m~dp-v~~~~g~t~~r~~i~~w~~~~~~~cp~~ 306 (1008)
|||+.+.+.|| +++++||+|++.+|++|+.. +..||.+
T Consensus 1 C~iC~~~~~~~~~~~~CGH~fC~~C~~~~~~~-~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRDPVVVTPCGHSFCKECIEKYLEK-NPKCPVC 39 (39)
T ss_dssp ETTTTSB-SSEEEECTTSEEEEHHHHHHHHHC-TSB-TTT
T ss_pred CCCCCCcccCcCEECCCCCchhHHHHHHHHHC-cCCCcCC
Confidence 89999999999 57899999999999999988 6789974
No 79
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=98.27 E-value=0.001 Score=78.61 Aligned_cols=385 Identities=17% Similarity=0.170 Sum_probs=229.2
Q ss_pred HHHHHHHHHHh-ccCchhhHHhhccc---chHHHHHHHhc-CCChHHHHHHHHHHHhhcCCcccHHHHHhcCcHHHHHHH
Q 001833 436 RKLAVALLLEL-STCNTLRDQIGDVQ---GCILLLVTMAS-SDDNQASRDAQELLENLSFSDDNVVQMAKANYFKHLLQR 510 (1008)
Q Consensus 436 ~~~A~~~L~~L-s~~~~~~~~i~~~~---g~i~~Lv~lL~-~~~~~~~~~a~~aL~~Ls~~~~n~~~i~~~g~v~~Lv~~ 510 (1008)
...+...|.++ +.+|+....++... |..+.+..+++ ..+++++..|+.++..+..+.+....+++.|.+..|+.+
T Consensus 1742 v~m~LtAL~Nli~~nPdlasvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Tan~~Cv~~~a~~~vL~~LL~l 1821 (2235)
T KOG1789|consen 1742 VLMTLTALANLVSANPDLASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLATANKECVTDLATCNVLTTLLTL 1821 (2235)
T ss_pred HHHHHHHHHHHHhhCcchhhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhcccHHHHHHHhhhHHHHHHHH
Confidence 34577788887 45888888887544 45567777777 578999999999999999999999999999999999998
Q ss_pred HhcCCHHHHHHHHHHHHHHcCChhhHHHHhhcCcHHHHHHHhc-cCCHHHHHHHHHHHHHhhCCC----chhHHHHh---
Q 001833 511 LSAGPESVKMRMATTLAEMELTDHHKASLLEGNVLGPLLHLVS-RGDIQMKKVAVKALRNLSSVP----QNGLQMIK--- 582 (1008)
Q Consensus 511 L~~~~~~~~~~aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~-~~~~~~~~~A~~aL~~L~~~~----~~~~~i~~--- 582 (1008)
|.+. +..|+.++.+|+.|+.+.+.-..-.++|++..+.+++- +.++..+..|+..|..|..++ .-+..+++
T Consensus 1822 LHS~-PS~R~~vL~vLYAL~S~~~i~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adkl~GPrV~ITL~kFLP 1900 (2235)
T KOG1789|consen 1822 LHSQ-PSMRARVLDVLYALSSNGQIGKEALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQADKLTGPRVTITLIKFLP 1900 (2235)
T ss_pred HhcC-hHHHHHHHHHHHHHhcCcHHHHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhccccCCceeeehHHhch
Confidence 8764 78899999999999888865555556777777766554 457888999999999997433 22111111
Q ss_pred --------cCChHHHHHHhcccCCC-----CcchHHHHHHHHHHHhccccccccCCcccccccch-hHHHHHHHhhccCC
Q 001833 583 --------EGAVGPLVDLLLHHSSS-----SSSLREETATAIMHLAVSTMYQESSQTPVTLLESD-KEIFMLFSLINLTG 648 (1008)
Q Consensus 583 --------~G~v~~Ll~ll~~~~~~-----~~~~~~~a~~~L~nLa~~~~~~~~~~~~~~~l~~~-~~i~~L~~ll~~~~ 648 (1008)
.| -.+.+..+...+.. .+..+......+..++......++....+..-.-+ .+.. .-. ...
T Consensus 1901 ~~f~d~~RD~-PEAaVH~fE~T~EnPELiWn~~~r~kvS~~i~tM~~~~y~~QQk~p~~~W~~PEqsAg~---~Ea-~~E 1975 (2235)
T KOG1789|consen 1901 EIFADSLRDS-PEAAVHMFESTSENPELIWNEVTRQKVSGIIDTMVGKLYEQQQKDPTVKWNTPEQSAGT---SEA-DKE 1975 (2235)
T ss_pred HHHHHHHhcC-HHHHHHHHhccCCCcccccCHhHHHHHHHHHHHHHHHHHHHhccCCcccccCchhhcch---hhh-ccC
Confidence 11 12223333222211 11223333334444433211100000000000000 0000 000 000
Q ss_pred hHHHHHHHHHHHHhccCCCh--hhHHHHhhhcCChHHHHHhhccCChhH--HHHHHHHHHHhccCCChhHHHhhhcccch
Q 001833 649 PNVQQRILQTFNALCRSPSA--GNIKTTLTQCSAIPVLVQLCEHDNENV--RANAVKLFCCLVDDGDEAIIREHVGQKCL 724 (1008)
Q Consensus 649 ~~v~~~al~aL~~L~~~~~~--~~~~~~i~e~~~i~~Lv~ll~~~~~~v--~~~a~~~L~~Ls~~~~~~~~~~~~~~~~i 724 (1008)
+.+-....+.+ ...|.. ..-+..+ .+.++.+++++...+++- ..-...++..|. ...+....++-.-|.+
T Consensus 1976 ~aVGG~~~R~F---i~~P~f~LR~Pk~FL--~~LLek~lelm~~~~peqh~l~lLt~A~V~L~-r~hP~LADqip~LGyl 2049 (2235)
T KOG1789|consen 1976 CAVGGSINREF---VVGPGFNLRHPKLFL--TELLEKVLELMSRPTPEQHELDLLTKAFVELV-RHHPNLADQLPSLGYL 2049 (2235)
T ss_pred cccchhhhHHH---hhCCCCcccCHHHHH--HHHHHHHHHHhcCCCcccchhHHHHHHHHHHH-HhCcchhhhCCCccch
Confidence 00000111111 111110 0011111 134666777776654332 222233344443 2223333444455899
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHhcCCCChhhHHHHHhcCCHHHHHHHhhCCCCCCCchhhHHHHHHHHHHHhcCCCCHH
Q 001833 725 ETLVTIIQSSHNEEEIASAMGILSKLPEVPQFTQWLLDAGALPIVLNFLKNGRQNDPNRFQVVENAVGALRRFTAPTNLE 804 (1008)
Q Consensus 725 ~~Lv~lL~~~~~~~v~~~a~~~L~nL~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~v~~~a~~aL~~L~~~~~~~ 804 (1008)
|.++..+....+ ..-..|+++|-.|+.+.-..+.+.....+..++..++. .....--|+.+|-++......+
T Consensus 2050 PK~~~Am~~~n~-s~P~SaiRVlH~Lsen~~C~~AMA~l~~i~~~m~~mkK-------~~~~~GLA~EalkR~~~r~~~e 2121 (2235)
T KOG1789|consen 2050 PKFCTAMCLQNT-SAPRSAIRVLHELSENQFCCDAMAQLPCIDGIMKSMKK-------QPSLMGLAAEALKRLMKRNTGE 2121 (2235)
T ss_pred HHHHHHHHhcCC-cCcHHHHHHHHHHhhccHHHHHHhccccchhhHHHHHh-------cchHHHHHHHHHHHHHHHhHHH
Confidence 999998766432 34478999999999999899999998888889998887 4556678899999888764566
Q ss_pred HHHHHHHcCChHHHHHHhhcC------Ch-HHHHHHHHHHhhh
Q 001833 805 WQKRAAEAGVIPKLVQLLEYG------TT-LTKEHAATSLARF 840 (1008)
Q Consensus 805 ~~~~l~~~g~l~~Lv~lL~~~------~~-~v~~~Aa~aL~nL 840 (1008)
......+.|++|.|+++|... ++ ..+.....+|...
T Consensus 2122 LVAQ~LK~gLvpyLL~LLd~~tL~~~~~~aas~A~Iv~aLk~~ 2164 (2235)
T KOG1789|consen 2122 LVAQMLKCGLVPYLLQLLDSSTLNGVSNGAAARAEIVDALKSA 2164 (2235)
T ss_pred HHHHHhccCcHHHHHHHhccccccccCchhHHHHHHHHHHHHH
Confidence 777788899999999999742 22 4444445555443
No 80
>PF05536 Neurochondrin: Neurochondrin
Probab=98.26 E-value=0.0028 Score=75.02 Aligned_cols=433 Identities=16% Similarity=0.126 Sum_probs=245.0
Q ss_pred hHHHHHHHcCCCHHHHHHHHHHHHHhccCChh---hHHHhhccCCcHHHHHHHhccC--------hhHHHHHHHHHHHhc
Q 001833 379 IPKLIYLLGSKNRDVRNRALIILHILVKDSND---TKERLANGDDAVESIVRSLGRR--------IEERKLAVALLLELS 447 (1008)
Q Consensus 379 i~~L~~lL~s~~~~~~~~Al~~L~~Ls~~~~~---~k~~i~~~~g~i~~Lv~~L~~~--------~~~~~~A~~~L~~Ls 447 (1008)
+..-+.+|++.++.-|..++..+..+...++. .++.|.+ +=+.+.+-++|..+ ..-+.-|+.+|..++
T Consensus 7 l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~-aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f~ 85 (543)
T PF05536_consen 7 LEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFE-AIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAFC 85 (543)
T ss_pred HHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHH-hcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHc
Confidence 56677889988877788888888888877653 3445667 66678888888652 123567888999999
Q ss_pred cCchhhHHhhcccchHHHHHHHhcCCCh-HHHHHHHHHHHhhcCCcccHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHH
Q 001833 448 TCNTLRDQIGDVQGCILLLVTMASSDDN-QASRDAQELLENLSFSDDNVVQMAKANYFKHLLQRLSAGPESVKMRMATTL 526 (1008)
Q Consensus 448 ~~~~~~~~i~~~~g~i~~Lv~lL~~~~~-~~~~~a~~aL~~Ls~~~~n~~~i~~~g~v~~Lv~~L~~~~~~~~~~aa~~L 526 (1008)
..|+....=. --+.||.|++.+.+.+. .+...+..+|..++.+++.+..+++.|+++.|.+.+.+ .+...+.++.+|
T Consensus 86 ~~~~~a~~~~-~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~~aLl~~g~v~~L~ei~~~-~~~~~E~Al~lL 163 (543)
T PF05536_consen 86 RDPELASSPQ-MVSRIPLLLEILSSSSDLETVDDALQCLLAIASSPEGAKALLESGAVPALCEIIPN-QSFQMEIALNLL 163 (543)
T ss_pred CChhhhcCHH-HHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhHHHHHhcCCHHHHHHHHHh-CcchHHHHHHHH
Confidence 8877643211 14679999999987666 99999999999999999999999999999999999887 456678888888
Q ss_pred HHHcCChhhHHHHhh----cCcHHHHHHHhccCCHHHHHHHHHHHHHhhCCCch------hHHHHhcCChHHHHHHhccc
Q 001833 527 AEMELTDHHKASLLE----GNVLGPLLHLVSRGDIQMKKVAVKALRNLSSVPQN------GLQMIKEGAVGPLVDLLLHH 596 (1008)
Q Consensus 527 ~~Ls~~~~~k~~i~~----~g~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~~~~------~~~i~~~G~v~~Ll~ll~~~ 596 (1008)
.++......+..-.. ...++.+-..........+-..+..|..+-...+. ...-.-..+...+..++++.
T Consensus 164 ~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~~iL~sr 243 (543)
T PF05536_consen 164 LNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKGLRDILQSR 243 (543)
T ss_pred HHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHHHHHHHhcC
Confidence 887443221110011 13345555555555555666777777777643211 11111122344455666553
Q ss_pred CCCCcchHHHHHHHHHHHhccccccccCCcccccccch-----hHHHHHHHhhccCChHHHHHHHHHHHHhccCCChhhH
Q 001833 597 SSSSSSLREETATAIMHLAVSTMYQESSQTPVTLLESD-----KEIFMLFSLINLTGPNVQQRILQTFNALCRSPSAGNI 671 (1008)
Q Consensus 597 ~~~~~~~~~~a~~~L~nLa~~~~~~~~~~~~~~~l~~~-----~~i~~L~~ll~~~~~~v~~~al~aL~~L~~~~~~~~~ 671 (1008)
.. +..+..+..+...|..... .+- ++... .....++++.. -+++. .+..|......+.....
T Consensus 244 ~~--~~~R~~al~Laa~Ll~~~G-~~w------l~~~~~~~~~~F~~Llv~l~~---VEir~-~L~~L~~~~~~~~~~~~ 310 (543)
T PF05536_consen 244 LT--PSQRDPALNLAASLLDLLG-PEW------LFADDKKSGKKFLLLLVNLAC---VEIRM-SLEELLEQLNPEEYPEK 310 (543)
T ss_pred CC--HHHHHHHHHHHHHHHHHhC-hHh------hcCCCCCCcccHHHHHHHHHH---HHHHH-HhHHhhhcCCchhhHHH
Confidence 32 4566667666666654211 000 11111 12222222211 11111 00111111110000011
Q ss_pred HHHhhh-cCChHHHHHhhcc----CChhHHHHHHHHHHHhccCCChhHHHhhhc--ccchHHHHHHhcCC-----CCHHH
Q 001833 672 KTTLTQ-CSAIPVLVQLCEH----DNENVRANAVKLFCCLVDDGDEAIIREHVG--QKCLETLVTIIQSS-----HNEEE 739 (1008)
Q Consensus 672 ~~~i~e-~~~i~~Lv~ll~~----~~~~v~~~a~~~L~~Ls~~~~~~~~~~~~~--~~~i~~Lv~lL~~~-----~~~~v 739 (1008)
...+.. .+.++..+..+.. .+..+ +++...++.+ .+.+...+..|.+- .+...
T Consensus 311 ~~~L~~cf~ilE~~I~~l~~~~~~~~~~~---------------~~~~l~kl~~~l~e~~~~vle~L~~~~d~~~~d~~~ 375 (543)
T PF05536_consen 311 QRLLASCFSILEHFIGYLVRSLEEESLDL---------------DPDTLLKLRTSLSETFSAVLEYLRDVWDESQKDPDF 375 (543)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccccCCC---------------CHHHHHHHHHHHHHHHHHHHHHHHHhhhccccchHH
Confidence 111110 1122222222222 11000 0111111111 12333334444332 12225
Q ss_pred HHHHHHHHhc-CCCChh-hHHHHHhcCCHHHHHHHhhCCCCCCCc----hhhHHHHHHHHHHHhcCCCCHHHHHHHHHcC
Q 001833 740 IASAMGILSK-LPEVPQ-FTQWLLDAGALPIVLNFLKNGRQNDPN----RFQVVENAVGALRRFTAPTNLEWQKRAAEAG 813 (1008)
Q Consensus 740 ~~~a~~~L~n-L~~~~~-~~~~l~~~g~l~~Lv~lL~~~~~~~~~----~~~v~~~a~~aL~~L~~~~~~~~~~~l~~~g 813 (1008)
..+++++|+. |+.++. .++.+ .|.+|.++.+.+........ ..+.+...+-+|++++. +++.++.+..+|
T Consensus 376 vlAsvR~L~~WLaEe~~~lr~~v--~~Ll~~ll~~~~~~~~~~~~~~~~~~d~~r~lLPaL~~lt~--e~~gr~~l~~~~ 451 (543)
T PF05536_consen 376 VLASVRVLGAWLAEETSALRKEV--YGLLPFLLSLYRESFQEAEPAREGPLDFLRFLLPALCHLTA--EEEGRKILLSNG 451 (543)
T ss_pred HHHHHHHHHHHHHhChHHHHHHH--HHHHHHHHHHHhhhhhhcccccccchhHHHHHHHHHhhhhc--cHHHHHHHHhCC
Confidence 5567777765 444443 34444 48899999999884322111 34678888999999999 799999999999
Q ss_pred ChHHHHHHhh----c--CChH-------HHHHHHHHHhhhhhcCCC
Q 001833 814 VIPKLVQLLE----Y--GTTL-------TKEHAATSLARFSKNSLG 846 (1008)
Q Consensus 814 ~l~~Lv~lL~----~--~~~~-------v~~~Aa~aL~nLs~~~~~ 846 (1008)
+...|.+.+- . +... .-..+|..+-|++...+.
T Consensus 452 g~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~c~illNl~~~e~~ 497 (543)
T PF05536_consen 452 GWKLLCDDLLKILQSPSGDDDAEDSAEMALVTACGILLNLVVTEPK 497 (543)
T ss_pred cHHHHHHHHHHHHHhcccCcchhhhhHHHHHHHHHHHHHHHhcccc
Confidence 9888876554 2 1111 235678888898865543
No 81
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=98.18 E-value=0.00037 Score=82.27 Aligned_cols=364 Identities=13% Similarity=0.179 Sum_probs=229.2
Q ss_pred HHHHHHHHHHHHHHhhchhhhhhHhh----cCchHHHHHHHcC-CCHHHHHHHHHHHHHhccCChhhHHHhhccCCcHHH
Q 001833 350 EEVLHCLEQLQDLCQQRDQHREWVIL----ENYIPKLIYLLGS-KNRDVRNRALIILHILVKDSNDTKERLANGDDAVES 424 (1008)
Q Consensus 350 ~~~~~al~~L~~l~~~~~~~r~~i~~----~g~i~~L~~lL~s-~~~~~~~~Al~~L~~Ls~~~~~~k~~i~~~~g~i~~ 424 (1008)
+.+.-++..|+++.+.++.--..+.+ .|..+.+...+++ +++.++.-|+..+..+.... +.-..+++ .|.+..
T Consensus 1740 ~~v~m~LtAL~Nli~~nPdlasvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Tan~-~Cv~~~a~-~~vL~~ 1817 (2235)
T KOG1789|consen 1740 TKVLMTLTALANLVSANPDLASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLATANK-ECVTDLAT-CNVLTT 1817 (2235)
T ss_pred HHHHHHHHHHHHHHhhCcchhhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhccc-HHHHHHHh-hhHHHH
Confidence 35667888899998888854444433 2667778777776 46789999999998888776 77778888 899999
Q ss_pred HHHHhccChhHHHHHHHHHHHhccCchhhHHhhcccchHHHHHHHhc-CCChHHHHHHHHHHHhhcCCc--ccHHHHHhc
Q 001833 425 IVRSLGRRIEERKLAVALLLELSTCNTLRDQIGDVQGCILLLVTMAS-SDDNQASRDAQELLENLSFSD--DNVVQMAKA 501 (1008)
Q Consensus 425 Lv~~L~~~~~~~~~A~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~-~~~~~~~~~a~~aL~~Ls~~~--~n~~~i~~~ 501 (1008)
|+.+|.+.+..|+.+..+|+.|+++++....-.+ .|++..+.+++. +.+++.+..++..|.+|...+ ..+..+---
T Consensus 1818 LL~lLHS~PS~R~~vL~vLYAL~S~~~i~keA~~-hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adkl~GPrV~ITL~ 1896 (2235)
T KOG1789|consen 1818 LLTLLHSQPSMRARVLDVLYALSSNGQIGKEALE-HGGLMYILSILCLTNSDQQRAQAAELLAKLQADKLTGPRVTITLI 1896 (2235)
T ss_pred HHHHHhcChHHHHHHHHHHHHHhcCcHHHHHHHh-cCchhhhhHHHhccCcHHHHHHHHHHHHHhhhccccCCceeeehH
Confidence 9999999888999999999999999886665555 688777777776 567889999999999996433 222222111
Q ss_pred CcHH-HHHHHHhcCCHHHHHHHHHHHHHHcCChh------hHHHHhhcCcHHHHHH-Hhcc--CCH----HHH-------
Q 001833 502 NYFK-HLLQRLSAGPESVKMRMATTLAEMELTDH------HKASLLEGNVLGPLLH-LVSR--GDI----QMK------- 560 (1008)
Q Consensus 502 g~v~-~Lv~~L~~~~~~~~~~aa~~L~~Ls~~~~------~k~~i~~~g~i~~Lv~-lL~~--~~~----~~~------- 560 (1008)
..+| .++..+++++ +.+..++-.-..+++ .+..+ ++.|..++. +-+. .+| .+-
T Consensus 1897 kFLP~~f~d~~RD~P----EAaVH~fE~T~EnPELiWn~~~r~kv--S~~i~tM~~~~y~~QQk~p~~~W~~PEqsAg~~ 1970 (2235)
T KOG1789|consen 1897 KFLPEIFADSLRDSP----EAAVHMFESTSENPELIWNEVTRQKV--SGIIDTMVGKLYEQQQKDPTVKWNTPEQSAGTS 1970 (2235)
T ss_pred HhchHHHHHHHhcCH----HHHHHHHhccCCCcccccCHhHHHHH--HHHHHHHHHHHHHHhccCCcccccCchhhcchh
Confidence 1222 2344455442 222222222222221 11111 223333321 1111 011 011
Q ss_pred ----HHHHHH--HHHhhCCCc----hhHHHHhcCChHHHHHHhcccCCCCcchHHHHHHHHHHHhccccccccCCccccc
Q 001833 561 ----KVAVKA--LRNLSSVPQ----NGLQMIKEGAVGPLVDLLLHHSSSSSSLREETATAIMHLAVSTMYQESSQTPVTL 630 (1008)
Q Consensus 561 ----~~A~~a--L~~L~~~~~----~~~~i~~~G~v~~Ll~ll~~~~~~~~~~~~~a~~~L~nLa~~~~~~~~~~~~~~~ 630 (1008)
+.+.+- ++.....|. +... .-.|.+..++++|...+.+ ....+.-..++..|...... ....
T Consensus 1971 Ea~~E~aVGG~~~R~Fi~~P~f~LR~Pk~-FL~~LLek~lelm~~~~pe-qh~l~lLt~A~V~L~r~hP~------LADq 2042 (2235)
T KOG1789|consen 1971 EADKECAVGGSINREFVVGPGFNLRHPKL-FLTELLEKVLELMSRPTPE-QHELDLLTKAFVELVRHHPN------LADQ 2042 (2235)
T ss_pred hhccCcccchhhhHHHhhCCCCcccCHHH-HHHHHHHHHHHHhcCCCcc-cchhHHHHHHHHHHHHhCcc------hhhh
Confidence 111111 111111221 2222 2234677778888765543 22333334444444443322 2235
Q ss_pred ccchhHHHHHHHhhccCChHHHHHHHHHHHHhccCCChhhHHHHhhhcCChHHHHHhhccCChhHHHHHHHHHHHhccCC
Q 001833 631 LESDKEIFMLFSLINLTGPNVQQRILQTFNALCRSPSAGNIKTTLTQCSAIPVLVQLCEHDNENVRANAVKLFCCLVDDG 710 (1008)
Q Consensus 631 l~~~~~i~~L~~ll~~~~~~v~~~al~aL~~L~~~~~~~~~~~~i~e~~~i~~Lv~ll~~~~~~v~~~a~~~L~~Ls~~~ 710 (1008)
+..-|-++.++..+...+..+-..|+++|..|+. +..+.++|.....+..++..+...- ....-|+.+|..+....
T Consensus 2043 ip~LGylPK~~~Am~~~n~s~P~SaiRVlH~Lse---n~~C~~AMA~l~~i~~~m~~mkK~~-~~~GLA~EalkR~~~r~ 2118 (2235)
T KOG1789|consen 2043 LPSLGYLPKFCTAMCLQNTSAPRSAIRVLHELSE---NQFCCDAMAQLPCIDGIMKSMKKQP-SLMGLAAEALKRLMKRN 2118 (2235)
T ss_pred CCCccchHHHHHHHHhcCCcCcHHHHHHHHHHhh---ccHHHHHHhccccchhhHHHHHhcc-hHHHHHHHHHHHHHHHh
Confidence 6667888999988887777777899999999986 5677788888878888888776543 34447888888776555
Q ss_pred ChhHHHhhhcccchHHHHHHhcCC
Q 001833 711 DEAIIREHVGQKCLETLVTIIQSS 734 (1008)
Q Consensus 711 ~~~~~~~~~~~~~i~~Lv~lL~~~ 734 (1008)
.++...+.++.|.++.|+++|...
T Consensus 2119 ~~eLVAQ~LK~gLvpyLL~LLd~~ 2142 (2235)
T KOG1789|consen 2119 TGELVAQMLKCGLVPYLLQLLDSS 2142 (2235)
T ss_pred HHHHHHHHhccCcHHHHHHHhccc
Confidence 677778888999999999999764
No 82
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=98.18 E-value=4.6e-05 Score=82.48 Aligned_cols=270 Identities=18% Similarity=0.141 Sum_probs=173.4
Q ss_pred HHHhhhcCChHHHHHhhccCChh--HHHHHHHHHHHhccCCChhHHHhhhcccchHHHHHHhcCCCCHHHHHHHHHHHhc
Q 001833 672 KTTLTQCSAIPVLVQLCEHDNEN--VRANAVKLFCCLVDDGDEAIIREHVGQKCLETLVTIIQSSHNEEEIASAMGILSK 749 (1008)
Q Consensus 672 ~~~i~e~~~i~~Lv~ll~~~~~~--v~~~a~~~L~~Ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~v~~~a~~~L~n 749 (1008)
.+.++..|++..|+.++..++-+ +|..+.++|..+....+ ...+...| ...+..+-+.....+.....+++|.+
T Consensus 173 CD~iR~~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~aeN---~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~ 248 (832)
T KOG3678|consen 173 CDAIRLDGGLDLLLRMFQAPNLETSVRVEAARLLEQILVAEN---RDRVARIG-LGVILNLAKEREPVELARSVAGILEH 248 (832)
T ss_pred hhHhhccchHHHHHHHHhCCchhHHHHHHHHHHHHHHHhhhh---hhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHH
Confidence 34567789999999999998754 58899999987762322 22332222 44555555555667788889999999
Q ss_pred CCC-ChhhHHHHHhcCCHHHHHHHhhCCCCCCCchhhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHHHhhcCChH
Q 001833 750 LPE-VPQFTQWLLDAGALPIVLNFLKNGRQNDPNRFQVVENAVGALRRFTAPTNLEWQKRAAEAGVIPKLVQLLEYGTTL 828 (1008)
Q Consensus 750 L~~-~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~v~~~a~~aL~~L~~~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~ 828 (1008)
+-. +++....++..|++..++...+. .++.+...++.+|+|++.+.....++.+++..+-.-|.-+-.+.+.-
T Consensus 249 mFKHSeet~~~Lvaa~~lD~vl~~~rR------t~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~skDel 322 (832)
T KOG3678|consen 249 MFKHSEETCQRLVAAGGLDAVLYWCRR------TDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSKDEL 322 (832)
T ss_pred HhhhhHHHHHHHHhhcccchheeeccc------CCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcchHHH
Confidence 988 88888999999999999888877 67899999999999999877788888999888888888888888889
Q ss_pred HHHHHHHHHhhhhhcCCCCCCCCCCCCcccccCCCCCCcccccCcccCcccchhHhh---ccchHHHHHhhcCCChhhhH
Q 001833 829 TKEHAATSLARFSKNSLGLSRPIPKRKGFWCFSPPPEIGCQVHGGLCGIESSFCLLE---ANAVRPLVRVLEDPDHGACE 905 (1008)
Q Consensus 829 v~~~Aa~aL~nLs~~~~~l~~~~~~~~g~~~~~~~~~~~c~vh~~~c~~~~~~~l~~---~g~i~~Lv~lL~~~d~~v~~ 905 (1008)
++.+||.+++-++.+..- -+.+-+++..- -.+....+|+.....+....-.. ...++.|+.+|.+.--+.+-
T Consensus 323 ~R~~AClAV~vlat~KE~-E~~VrkS~Tla----LVEPlva~~DP~~FARD~hd~aQG~~~d~LqRLvPlLdS~R~EAq~ 397 (832)
T KOG3678|consen 323 LRLHACLAVAVLATNKEV-EREVRKSGTLA----LVEPLVASLDPGRFARDAHDYAQGRGPDDLQRLVPLLDSNRLEAQC 397 (832)
T ss_pred HHHHHHHHHhhhhhhhhh-hHHHhhccchh----hhhhhhhccCcchhhhhhhhhhccCChHHHHHhhhhhhcchhhhhh
Confidence 999999999998743221 11111121100 00011111111111111000011 12456677777754333332
Q ss_pred HHHHHHHhhhcccccchhhHHHHhcCchHHHHHHhcCCChHHHHHHHHHHH
Q 001833 906 ASLDALVTLIEGERLQNGSKVLEDANAIDRMVRFLSSPSPKLQEKALDSVE 956 (1008)
Q Consensus 906 ~al~aL~~L~~~~~~~~~~~~i~~~~~i~~l~~ll~~~~~~l~~~a~~~L~ 956 (1008)
.+..-|+.=..-...+.-.+.|.+-|+|+.|-++.+++|....+.|-..|.
T Consensus 398 i~AF~l~~EAaIKs~Q~K~kVFseIGAIQaLKevaSS~d~vaakfAseALt 448 (832)
T KOG3678|consen 398 IGAFYLCAEAAIKSLQGKTKVFSEIGAIQALKEVASSPDEVAAKFASEALT 448 (832)
T ss_pred hHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHH
Confidence 222212211111122345678899999999999998877655554444443
No 83
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.15 E-value=0.00027 Score=73.55 Aligned_cols=281 Identities=17% Similarity=0.161 Sum_probs=170.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHcCChhhHHHHh-hcCcHHHHHHHhccCCHHHHHHHHHHHHHhhCCCchhHHHHhc
Q 001833 505 KHLLQRLSAGPESVKMRMATTLAEMELTDHHKASLL-EGNVLGPLLHLVSRGDIQMKKVAVKALRNLSSVPQNGLQMIKE 583 (1008)
Q Consensus 505 ~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~~~~k~~i~-~~g~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~~~~~~~i~~~ 583 (1008)
..+++++...++.++..|...+..+... ..+.... +...++.+.+++....+ .+.|+.+|.|++..+.-+..+++.
T Consensus 6 ~elv~ll~~~sP~v~~~AV~~l~~lt~~-~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~~~l~~~ll~~ 82 (353)
T KOG2973|consen 6 VELVELLHSLSPPVRKAAVEHLLGLTGR-GLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQKEELRKKLLQD 82 (353)
T ss_pred HHHHHHhccCChHHHHHHHHHHhhcccc-chhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhhHHHHHHHHHH
Confidence 4577889999999999999888888666 4443322 23468889999987766 788999999999999889998887
Q ss_pred CChHHHHHHhcccCCCCcchHHHHHHHHHHHhccccccccCCcccccccchhHHHHHHHhhccCChHHHHHHHHHHHHhc
Q 001833 584 GAVGPLVDLLLHHSSSSSSLREETATAIMHLAVSTMYQESSQTPVTLLESDKEIFMLFSLINLTGPNVQQRILQTFNALC 663 (1008)
Q Consensus 584 G~v~~Ll~ll~~~~~~~~~~~~~a~~~L~nLa~~~~~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~aL~~L~ 663 (1008)
.+..++..+.+.. ..+.+..+.+|.||+..+.. +..++ .++.
T Consensus 83 -~~k~l~~~~~~p~---~~lad~~cmlL~NLs~~~~~----------------~~~ll------------------~~~~ 124 (353)
T KOG2973|consen 83 -LLKVLMDMLTDPQ---SPLADLICMLLSNLSRDDDE----------------VAALL------------------TNLT 124 (353)
T ss_pred -HHHHHHHHhcCcc---cchHHHHHHHHHHhccCchH----------------HHHHH------------------Hhcc
Confidence 6666777766554 24788899999999864431 11111 1111
Q ss_pred cCCChhhHHHHhhhcCChHHHHHhhccC-Ch-hHHHHHHHHHHHhccCCChhHHHhhhcccc--hHHHHHHhcCCCCHHH
Q 001833 664 RSPSAGNIKTTLTQCSAIPVLVQLCEHD-NE-NVRANAVKLFCCLVDDGDEAIIREHVGQKC--LETLVTIIQSSHNEEE 739 (1008)
Q Consensus 664 ~~~~~~~~~~~i~e~~~i~~Lv~ll~~~-~~-~v~~~a~~~L~~Ls~~~~~~~~~~~~~~~~--i~~Lv~lL~~~~~~~v 739 (1008)
. + ++.|.......+++.+ +. .--...+.++.+|++. ......+.+... .+.|+.+ ......--
T Consensus 125 ~---~-------~~~~lm~l~~~~~d~~~n~~a~f~ylA~vf~nls~~--~~gR~l~~~~k~~p~~kll~f-t~~~s~vR 191 (353)
T KOG2973|consen 125 E---K-------KDSGLMRLARAFCDKSYNAYAEFHYLAPVFANLSQF--EAGRKLLLEPKRFPDQKLLPF-TSEDSQVR 191 (353)
T ss_pred c---c-------cccchHHHHHHHhCcccccccchhHHHHHHHHHhhh--hhhhhHhcchhhhhHhhhhcc-cccchhhh
Confidence 0 0 1123333333344433 21 2233455567777632 222223333221 1222222 12112122
Q ss_pred HHHHHHHHhcCCCChhhHHHHHhcC--CHHHHHHHhhC-------------------C-CCCCCchhhHHHHHHHHHHHh
Q 001833 740 IASAMGILSKLPEVPQFTQWLLDAG--ALPIVLNFLKN-------------------G-RQNDPNRFQVVENAVGALRRF 797 (1008)
Q Consensus 740 ~~~a~~~L~nL~~~~~~~~~l~~~g--~l~~Lv~lL~~-------------------~-~~~~~~~~~v~~~a~~aL~~L 797 (1008)
+...+++|.|.+.+......+++.+ .+|.|+-=+.+ + .....+++.++...+.+|.-|
T Consensus 192 r~GvagtlkN~cFd~~~h~~lL~e~~~lLp~iLlPlagpee~sEEdm~~LP~eLQyLp~dKeRepdpdIrk~llEai~lL 271 (353)
T KOG2973|consen 192 RGGVAGTLKNCCFDAKLHEVLLDESINLLPAILLPLAGPEELSEEDMAKLPVELQYLPEDKEREPDPDIRKMLLEALLLL 271 (353)
T ss_pred ccchHHHHHhhhccchhHHHHhcchHHHHHHHHhhcCCccccCHHHHhcCCHhhhcCCccccCCCChHHHHHHHHHHHHH
Confidence 3456778888887666666666522 22333222222 1 111226789999999999999
Q ss_pred cCCCCHHHHHHHHHcCChHHHHHHhhcC-ChHHHHHHHHHHhhhh
Q 001833 798 TAPTNLEWQKRAAEAGVIPKLVQLLEYG-TTLTKEHAATSLARFS 841 (1008)
Q Consensus 798 ~~~~~~~~~~~l~~~g~l~~Lv~lL~~~-~~~v~~~Aa~aL~nLs 841 (1008)
+. ....|+.+.+.|+.|.+-.+-... ++++++.+-..+..+.
T Consensus 272 ca--T~~GRe~lR~kgvYpilRElhk~e~ded~~~ace~vvq~Lv 314 (353)
T KOG2973|consen 272 CA--TRAGREVLRSKGVYPILRELHKWEEDEDIREACEQVVQMLV 314 (353)
T ss_pred Hh--hhHhHHHHHhcCchHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence 99 788999999999999887776654 5566665555544444
No 84
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=98.14 E-value=0.0014 Score=73.48 Aligned_cols=330 Identities=21% Similarity=0.212 Sum_probs=207.8
Q ss_pred HHHHHHHhhchhhhhhHhhcCchHHHHHHHcCCCHHHHHHHHHHHHHhccCChhhHHHhhccCCcHHHHHHHhccC---h
Q 001833 357 EQLQDLCQQRDQHREWVILENYIPKLIYLLGSKNRDVRNRALIILHILVKDSNDTKERLANGDDAVESIVRSLGRR---I 433 (1008)
Q Consensus 357 ~~L~~l~~~~~~~r~~i~~~g~i~~L~~lL~s~~~~~~~~Al~~L~~Ls~~~~~~k~~i~~~~g~i~~Lv~~L~~~---~ 433 (1008)
..|..+-+..+.-|.-+.-....+.+..++-+++.++|..+.++++.+..+. +.-+.+.+ .+.--.+++.|..+ .
T Consensus 5 N~Lv~l~~~~p~l~~~~~~~~~~~~i~~~lL~~~~~vraa~yRilRy~i~d~-~~l~~~~~-l~id~~ii~SL~~~~~~~ 82 (371)
T PF14664_consen 5 NDLVDLLKRHPTLKYDLVLSFFGERIQCMLLSDSKEVRAAGYRILRYLISDE-ESLQILLK-LHIDIFIIRSLDRDNKND 82 (371)
T ss_pred HHHHHHHHhCchhhhhhhHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHcCH-HHHHHHHH-cCCchhhHhhhcccCCCh
Confidence 4455555555644444444445556655555666999999999999988887 66666776 67666788888653 4
Q ss_pred hHHHHHHHHHHHhccCchhhHHhhcccchHHHHHHHhcCCChHHHHHHHHHHHhhcCCcccHHHHHhcCcHHHHHHHHhc
Q 001833 434 EERKLAVALLLELSTCNTLRDQIGDVQGCILLLVTMASSDDNQASRDAQELLENLSFSDDNVVQMAKANYFKHLLQRLSA 513 (1008)
Q Consensus 434 ~~~~~A~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~~~n~~~i~~~g~v~~Lv~~L~~ 513 (1008)
.+|++|...++.+...+.....+. .|.+..++.+..+.+...+..|+.+|..++..++ ..++..|++..|++.+-+
T Consensus 83 ~ER~QALkliR~~l~~~~~~~~~~--~~vvralvaiae~~~D~lr~~cletL~El~l~~P--~lv~~~gG~~~L~~~l~d 158 (371)
T PF14664_consen 83 VEREQALKLIRAFLEIKKGPKEIP--RGVVRALVAIAEHEDDRLRRICLETLCELALLNP--ELVAECGGIRVLLRALID 158 (371)
T ss_pred HHHHHHHHHHHHHHHhcCCcccCC--HHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCH--HHHHHcCCHHHHHHHHHh
Confidence 578999999998876544444442 6889999999999999999999999999987544 356789999999999998
Q ss_pred CCHHHHHHHHHHHHHHcCChhhHHHHhhcCcHHHHHHHhccC-------CH--HHHHHHHHHHHHhh-CCCchhHHHHh-
Q 001833 514 GPESVKMRMATTLAEMELTDHHKASLLEGNVLGPLLHLVSRG-------DI--QMKKVAVKALRNLS-SVPQNGLQMIK- 582 (1008)
Q Consensus 514 ~~~~~~~~aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~-------~~--~~~~~A~~aL~~L~-~~~~~~~~i~~- 582 (1008)
|+.+..+..+.++..+-.++..|..+...--+..++.-..+. +. .--..+..++..+- +.++--.--..
T Consensus 159 ~~~~~~~~l~~~lL~lLd~p~tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~ 238 (371)
T PF14664_consen 159 GSFSISESLLDTLLYLLDSPRTRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMND 238 (371)
T ss_pred ccHhHHHHHHHHHHHHhCCcchhhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCC
Confidence 877788888888888888888887665433344444333222 22 23344555555554 23332111111
Q ss_pred cCChHHHHHHhcccCCCCcchHHHHHHHHHHHhccccccccCC-cccccccchhHHHHHHHhh----------c---cCC
Q 001833 583 EGAVGPLVDLLLHHSSSSSSLREETATAIMHLAVSTMYQESSQ-TPVTLLESDKEIFMLFSLI----------N---LTG 648 (1008)
Q Consensus 583 ~G~v~~Ll~ll~~~~~~~~~~~~~a~~~L~nLa~~~~~~~~~~-~~~~~l~~~~~i~~L~~ll----------~---~~~ 648 (1008)
..++..|+..|..+. +.+++....++..+-.-........ .....+...+.+..-..+- . ...
T Consensus 239 ~~~lksLv~~L~~p~---~~ir~~Ildll~dllrik~p~w~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~~~~~~~ 315 (371)
T PF14664_consen 239 FRGLKSLVDSLRLPN---PEIRKAILDLLFDLLRIKPPSWTESFLAGRRLTTYGRFQDTWNLSSGFAEAKSILPHRSSKR 315 (371)
T ss_pred chHHHHHHHHHcCCC---HHHHHHHHHHHHHHHCCCCCCcccchhhcccccccccccchhhhcccccccccccCcccccc
Confidence 146788888888765 5688888888888876322211100 0000011111110000000 0 011
Q ss_pred hHHHHHHHHHHHHhccCCChhhHHHHhhhcCChHHHHHhhccC-ChhHHHHHHHHHHHhc
Q 001833 649 PNVQQRILQTFNALCRSPSAGNIKTTLTQCSAIPVLVQLCEHD-NENVRANAVKLFCCLV 707 (1008)
Q Consensus 649 ~~v~~~al~aL~~L~~~~~~~~~~~~i~e~~~i~~Lv~ll~~~-~~~v~~~a~~~L~~Ls 707 (1008)
+.+..+-... ....+.++|.++.|+++..+. ++.+...|..+|..+-
T Consensus 316 ~~l~~~y~aL------------ll~ili~~gL~~~L~~li~~~~d~~l~~KAtlLL~elL 363 (371)
T PF14664_consen 316 PNLVNHYLAL------------LLAILIEAGLLEALVELIESSEDSSLSRKATLLLGELL 363 (371)
T ss_pred ccHHHHHHHH------------HHHHHHHcChHHHHHHHHhcCCCchHHHHHHHHHHHHH
Confidence 1111111111 223456789999999999988 7888888888887663
No 85
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.13 E-value=0.0012 Score=76.90 Aligned_cols=402 Identities=16% Similarity=0.208 Sum_probs=234.7
Q ss_pred hhhhhccCcchHHHHHHHHHHHHHHhhchhhhhhHhhcCchHHHHHHHcCCCHHHHHHHHHHHHHhccCChhhHHHhhcc
Q 001833 339 SMKPKLVSTEVEEVLHCLEQLQDLCQQRDQHREWVILENYIPKLIYLLGSKNRDVRNRALIILHILVKDSNDTKERLANG 418 (1008)
Q Consensus 339 ~~~~~l~~~~~~~~~~al~~L~~l~~~~~~~r~~i~~~g~i~~L~~lL~s~~~~~~~~Al~~L~~Ls~~~~~~k~~i~~~ 418 (1008)
.++..|.+++.-.+.-||..|-.+|...- .| ...|.+.+++...++.+|..|+-++..+-...|+--+.
T Consensus 111 slknDL~s~nq~vVglAL~alg~i~s~Em-ar------dlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P~l~e~---- 179 (866)
T KOG1062|consen 111 SLKNDLNSSNQYVVGLALCALGNICSPEM-AR------DLAPEVERLLQHRDPYIRKKAALCAVRFIRKVPDLVEH---- 179 (866)
T ss_pred HHHhhccCCCeeehHHHHHHhhccCCHHH-hH------HhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCchHHHH----
Confidence 45566777777777788888877774321 12 25778888999999999999988777666555443332
Q ss_pred CCcHHHHHHHhc-cChhHHHHHHHHHHHhcc-CchhhHHhhcccchHHHHHHHhc----CC-----------ChHHHHHH
Q 001833 419 DDAVESIVRSLG-RRIEERKLAVALLLELST-CNTLRDQIGDVQGCILLLVTMAS----SD-----------DNQASRDA 481 (1008)
Q Consensus 419 ~g~i~~Lv~~L~-~~~~~~~~A~~~L~~Ls~-~~~~~~~i~~~~g~i~~Lv~lL~----~~-----------~~~~~~~a 481 (1008)
.++...+.|. ++..+...++..+.+++. +++.-..+ ...++.||..|+ ++ ||-.+...
T Consensus 180 --f~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l~~f---r~l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~i 254 (866)
T KOG1062|consen 180 --FVIAFRKLLCEKHHGVLIAGLHLITELCKISPDALSYF---RDLVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRI 254 (866)
T ss_pred --hhHHHHHHHhhcCCceeeeHHHHHHHHHhcCHHHHHHH---HHHHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHH
Confidence 2333444443 344555556666666655 23322222 123444444443 11 22222222
Q ss_pred HHHHHhhcCCcccHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHHcCChh-hHHHHhhc---CcHHHHHHHhccCCH
Q 001833 482 QELLENLSFSDDNVVQMAKANYFKHLLQRLSAGPESVKMRMATTLAEMELTDH-HKASLLEG---NVLGPLLHLVSRGDI 557 (1008)
Q Consensus 482 ~~aL~~Ls~~~~n~~~i~~~g~v~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~~~-~k~~i~~~---g~i~~Lv~lL~~~~~ 557 (1008)
+ .++.+|-.++++..+.+..+|+.++.+.+ +|. .++. .++..+..+- .++
T Consensus 255 L-----------------------rlLriLGq~d~daSd~M~DiLaqvatntdsskN-~GnAILYE~V~TI~~I~--~~~ 308 (866)
T KOG1062|consen 255 L-----------------------RLLRILGQNDADASDLMNDILAQVATNTDSSKN-AGNAILYECVRTIMDIR--SNS 308 (866)
T ss_pred H-----------------------HHHHHhcCCCccHHHHHHHHHHHHHhccccccc-chhHHHHHHHHHHHhcc--CCc
Confidence 2 23455667788888899999998876543 332 2222 2333333333 456
Q ss_pred HHHHHHHHHHHHhhCCCchhHHHHhcCChHHHHHHhcccCCCCcchHHHHHHHHHHHhccccccccCCcccccccchhHH
Q 001833 558 QMKKVAVKALRNLSSVPQNGLQMIKEGAVGPLVDLLLHHSSSSSSLREETATAIMHLAVSTMYQESSQTPVTLLESDKEI 637 (1008)
Q Consensus 558 ~~~~~A~~aL~~L~~~~~~~~~i~~~G~v~~Ll~ll~~~~~~~~~~~~~a~~~L~nLa~~~~~~~~~~~~~~~l~~~~~i 637 (1008)
..++.|+.+|+..-.++++-.+ .=++..|...++..+ ..++++=..
T Consensus 309 ~LrvlainiLgkFL~n~d~Nir---YvaLn~L~r~V~~d~---~avqrHr~t---------------------------- 354 (866)
T KOG1062|consen 309 GLRVLAINILGKFLLNRDNNIR---YVALNMLLRVVQQDP---TAVQRHRST---------------------------- 354 (866)
T ss_pred hHHHHHHHHHHHHhcCCcccee---eeehhhHHhhhcCCc---HHHHHHHHH----------------------------
Confidence 7889999999988764443222 225677777776543 334444333
Q ss_pred HHHHHhhccCChHHHHHHHHHHHHhccCCChhhHHHHhhhcCChHHHHHhhccCChhHHHHHHHHHHHhccCCChhHHHh
Q 001833 638 FMLFSLINLTGPNVQQRILQTFNALCRSPSAGNIKTTLTQCSAIPVLVQLCEHDNENVRANAVKLFCCLVDDGDEAIIRE 717 (1008)
Q Consensus 638 ~~L~~ll~~~~~~v~~~al~aL~~L~~~~~~~~~~~~i~e~~~i~~Lv~ll~~~~~~v~~~a~~~L~~Ls~~~~~~~~~~ 717 (1008)
++..|+..++.++..++..++.|.... .++ ..+..|+.+|...+++.+...+.-+..+++...++...
T Consensus 355 --IleCL~DpD~SIkrralELs~~lvn~~---Nv~------~mv~eLl~fL~~~d~~~k~~~as~I~~laEkfaP~k~W- 422 (866)
T KOG1062|consen 355 --ILECLKDPDVSIKRRALELSYALVNES---NVR------VMVKELLEFLESSDEDFKADIASKIAELAEKFAPDKRW- 422 (866)
T ss_pred --HHHHhcCCcHHHHHHHHHHHHHHhccc---cHH------HHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCcchh-
Confidence 445556788999999999999998642 222 24667889999999999999888888887443332221
Q ss_pred hhcccchHHHHHHhcCCC---CHHHHHHHHHHHhcCCC--ChhhHHHHHhcCCHHHHHHHhhCCCCCCCchhhHHHHHHH
Q 001833 718 HVGQKCLETLVTIIQSSH---NEEEIASAMGILSKLPE--VPQFTQWLLDAGALPIVLNFLKNGRQNDPNRFQVVENAVG 792 (1008)
Q Consensus 718 ~~~~~~i~~Lv~lL~~~~---~~~v~~~a~~~L~nL~~--~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~v~~~a~~ 792 (1008)
.++.+...+.... ++++...-++.|++=.. +......++..-.... ++.- ..+.+..-+.|
T Consensus 423 -----~idtml~Vl~~aG~~V~~dv~~nll~LIa~~~~e~~~y~~~rLy~a~~~~~---~~~i------s~e~l~qVa~W 488 (866)
T KOG1062|consen 423 -----HIDTMLKVLKTAGDFVNDDVVNNLLRLIANAFQELHEYAVLRLYLALSEDT---LLDI------SQEPLLQVASW 488 (866)
T ss_pred -----HHHHHHHHHHhcccccchhhHHHHHHHHhcCCcchhhHHHHHHHHHHhhhh---hhhh------hhhhHHHHHHH
Confidence 2444455554432 34455556666666533 2222222222111111 1111 34567888899
Q ss_pred HHHHhc----CCCCHHHHHHHHHcCChHHHHHHhhc--CChHHHHHHHHHHhhhhh
Q 001833 793 ALRRFT----APTNLEWQKRAAEAGVIPKLVQLLEY--GTTLTKEHAATSLARFSK 842 (1008)
Q Consensus 793 aL~~L~----~~~~~~~~~~l~~~g~l~~Lv~lL~~--~~~~v~~~Aa~aL~nLs~ 842 (1008)
+|+.-. .+.+.+--..+-+..++..|.+++.+ .+..++..|..||.+|+.
T Consensus 489 ~IGEYGdlll~~~~~~~p~~vtesdivd~l~~v~~~~~s~~~tk~yal~Al~KLSs 544 (866)
T KOG1062|consen 489 CIGEYGDLLLDGANEEEPIKVTESDIVDKLEKVLMSHSSDSTTKGYALTALLKLSS 544 (866)
T ss_pred HhhhhhHHhhcCccccCCCcCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHh
Confidence 888654 11111111123345667778777764 456899999999999983
No 86
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=98.12 E-value=0.00043 Score=79.00 Aligned_cols=335 Identities=15% Similarity=0.117 Sum_probs=205.3
Q ss_pred HHHHHHhcccCCCCcchHHHHHHHHHHHhccccccccCCcccccccchhHHHHHHHhhccCChHHHHHHHHHHHHhccCC
Q 001833 587 GPLVDLLLHHSSSSSSLREETATAIMHLAVSTMYQESSQTPVTLLESDKEIFMLFSLINLTGPNVQQRILQTFNALCRSP 666 (1008)
Q Consensus 587 ~~Ll~ll~~~~~~~~~~~~~a~~~L~nLa~~~~~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~aL~~L~~~~ 666 (1008)
..+++-+..++ +.+++....+|..+....... ........+..++....-.-+..+.+.++.+..+.
T Consensus 99 ~~~~~~~~tps---~~~q~~~~~~l~~~~~~~~~~----------~~~~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~ 165 (569)
T KOG1242|consen 99 EILLEELDTPS---KSVQRAVSTCLPPLVVLSKGL----------SGEYVLELLLELLTSTKIAERAGAAYGLAGLVNGL 165 (569)
T ss_pred HHHHHhcCCCc---HHHHHHHHHHhhhHHHHhhcc----------CHHHHHHHHHHHhccccHHHHhhhhHHHHHHHcCc
Confidence 34444444333 567777777777776543322 23456677888888777888888999999998753
Q ss_pred ChhhHHHHhhhcCChHHHHHhhccCChhHHHH-HHHHHHHhccCCChhHHHhhhcccchHHHHHHhcCCC--CHHHHHHH
Q 001833 667 SAGNIKTTLTQCSAIPVLVQLCEHDNENVRAN-AVKLFCCLVDDGDEAIIREHVGQKCLETLVTIIQSSH--NEEEIASA 743 (1008)
Q Consensus 667 ~~~~~~~~i~e~~~i~~Lv~ll~~~~~~v~~~-a~~~L~~Ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~--~~~v~~~a 743 (1008)
....+.+.+++..|.....+.....+.. +..+...... ......+.+.++.+-.+|.+.+ ..+++.+|
T Consensus 166 ----~i~~~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~-----~Lg~~~EPyiv~~lp~il~~~~d~~~~Vr~Aa 236 (569)
T KOG1242|consen 166 ----GIESLKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQG-----NLGPPFEPYIVPILPSILTNFGDKINKVREAA 236 (569)
T ss_pred ----HHhhhhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHH-----hcCCCCCchHHhhHHHHHHHhhccchhhhHHH
Confidence 2345667788899999988876544443 3333222221 1112345667777777776552 34566666
Q ss_pred HHHHhcCCC--ChhhHHHHHhcCCHHHHHHHhhCCCCCCCchhhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHHH
Q 001833 744 MGILSKLPE--VPQFTQWLLDAGALPIVLNFLKNGRQNDPNRFQVVENAVGALRRFTAPTNLEWQKRAAEAGVIPKLVQL 821 (1008)
Q Consensus 744 ~~~L~nL~~--~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~v~~~a~~aL~~L~~~~~~~~~~~l~~~g~l~~Lv~l 821 (1008)
..+...+-. ++...+. .+|.++.-+.. .....+..++..|+.+..+ ...+-......++|.+.+.
T Consensus 237 ~~a~kai~~~~~~~aVK~-----llpsll~~l~~------~kWrtK~aslellg~m~~~--ap~qLs~~lp~iiP~lsev 303 (569)
T KOG1242|consen 237 VEAAKAIMRCLSAYAVKL-----LLPSLLGSLLE------AKWRTKMASLELLGAMADC--APKQLSLCLPDLIPVLSEV 303 (569)
T ss_pred HHHHHHHHHhcCcchhhH-----hhhhhHHHHHH------HhhhhHHHHHHHHHHHHHh--chHHHHHHHhHhhHHHHHH
Confidence 555444322 2222221 34555555554 3556788999999999885 3344466678899999999
Q ss_pred hhcCChHHHHHHHHHHhhhhhcCCCCCCCCCCCCcccccCCCCCCcccccCcccCcccchhHhhccchHHHHHhhcCCCh
Q 001833 822 LEYGTTLTKEHAATSLARFSKNSLGLSRPIPKRKGFWCFSPPPEIGCQVHGGLCGIESSFCLLEANAVRPLVRVLEDPDH 901 (1008)
Q Consensus 822 L~~~~~~v~~~Aa~aL~nLs~~~~~l~~~~~~~~g~~~~~~~~~~~c~vh~~~c~~~~~~~l~~~g~i~~Lv~lL~~~d~ 901 (1008)
|.+..+++|+.+-.++.+++.-.++ ++ + ...++.|++.+.++..
T Consensus 304 l~DT~~evr~a~~~~l~~~~svidN------------------------------~d----I--~~~ip~Lld~l~dp~~ 347 (569)
T KOG1242|consen 304 LWDTKPEVRKAGIETLLKFGSVIDN------------------------------PD----I--QKIIPTLLDALADPSC 347 (569)
T ss_pred HccCCHHHHHHHHHHHHHHHHhhcc------------------------------HH----H--HHHHHHHHHHhcCccc
Confidence 9999999999999999999843321 00 0 1257778888888765
Q ss_pred hhhHHHHHHHHhhh--cccccchhhHHHHhcCchHHHHHHhcCCChHHHHHHHHHHHHHhcChH---HHHHhccccCchh
Q 001833 902 GACEASLDALVTLI--EGERLQNGSKVLEDANAIDRMVRFLSSPSPKLQEKALDSVERIFRLPE---FKQKYGKSAQMPL 976 (1008)
Q Consensus 902 ~v~~~al~aL~~L~--~~~~~~~~~~~i~~~~~i~~l~~ll~~~~~~l~~~a~~~L~~l~~~~~---~~~~~~~~~~~~L 976 (1008)
.+.+ ++..|..-. .-.+ .+.... .++.+.+-+..++...++.++.++.|+...-+ ....|-..-.+.|
T Consensus 348 ~~~e-~~~~L~~ttFV~~V~-~psLal-----mvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~lapfl~~Llp~l 420 (569)
T KOG1242|consen 348 YTPE-CLDSLGATTFVAEVD-APSLAL-----MVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAPFLPSLLPGL 420 (569)
T ss_pred chHH-HHHhhcceeeeeeec-chhHHH-----HHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhhhHHHHhhHH
Confidence 5544 333333221 1100 011111 13444444566778888999999888855432 2223332223345
Q ss_pred hhhcccCCchhhHHHHHHHHHHh
Q 001833 977 VDLTQRGNSSMKSLSARVLAHLN 999 (1008)
Q Consensus 977 v~l~~~~~~~~~~~Aa~~L~~L~ 999 (1008)
-..+.+..|++|..|+++|..+.
T Consensus 421 k~~~~d~~PEvR~vaarAL~~l~ 443 (569)
T KOG1242|consen 421 KENLDDAVPEVRAVAARALGALL 443 (569)
T ss_pred HHHhcCCChhHHHHHHHHHHHHH
Confidence 55666678999999999995443
No 87
>COG5113 UFD2 Ubiquitin fusion degradation protein 2 [Posttranslational modification, protein turnover, chaperones]
Probab=98.11 E-value=8.7e-05 Score=83.07 Aligned_cols=72 Identities=25% Similarity=0.359 Sum_probs=64.6
Q ss_pred CCCCccccccccccccCCceecc-CcccccHHHHHHHHhcCCCCCCCcCccCCCCCCccCHhhHHHHHHHHHhc
Q 001833 260 LEPLQSFYCPITRDVMVDPVETS-SGQTFERSAIEKWFSDGNNLCPLTMTVLDTSILRPNKTLRQSIEEWKDRN 332 (1008)
Q Consensus 260 ~~~~~~~~cpi~~~~m~dpv~~~-~g~t~~r~~i~~w~~~~~~~cp~~~~~l~~~~l~pN~~l~~~I~~w~~~~ 332 (1008)
.++|++|+.|+...+|+|||+++ ||.|.||+.|..++-. ..++|..+.||+-.+++||..||+-|-.|....
T Consensus 849 GDvPDeFlDPLmftimkdPV~Lp~S~i~IDRSTikahlls-d~tDPFNRmPLtlddVtpn~eLrekIn~f~k~k 921 (929)
T COG5113 849 GDVPDEFLDPLMFTIMKDPVKLPTSRITIDRSTIKAHLLS-DGTDPFNRMPLTLDDVTPNAELREKINRFYKCK 921 (929)
T ss_pred cCCchhhhCchhhhcccCCeecccccccccHHHHHHHHhc-CCCCccccCCCchhhcCCCHHHHHHHHHHHhcc
Confidence 34789999999999999999996 7899999999999865 447999999999999999999999999986543
No 88
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.05 E-value=0.0015 Score=73.17 Aligned_cols=353 Identities=15% Similarity=0.131 Sum_probs=217.8
Q ss_pred hcCchHHHHHHHcCCCHHHHHHHHHHHHHhccCChhhHHHhhccCCcHHHHHHHh----ccChhHHHHHHHHHHHhccCc
Q 001833 375 LENYIPKLIYLLGSKNRDVRNRALIILHILVKDSNDTKERLANGDDAVESIVRSL----GRRIEERKLAVALLLELSTCN 450 (1008)
Q Consensus 375 ~~g~i~~L~~lL~s~~~~~~~~Al~~L~~Ls~~~~~~k~~i~~~~g~i~~Lv~~L----~~~~~~~~~A~~~L~~Ls~~~ 450 (1008)
-.+.+|+++..+...+..+|..|...|.|+++-. |..+. -..+.+..+| .......+.++..|-.|-++-
T Consensus 82 ~~~iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv~---k~~v~---~~Fn~iFdvL~klsaDsd~~V~~~aeLLdRLikdI 155 (675)
T KOG0212|consen 82 LEKIVPPVLNCFSDQDSQVRYYACESLYNIAKVA---KGEVL---VYFNEIFDVLCKLSADSDQNVRGGAELLDRLIKDI 155 (675)
T ss_pred HHHhhHHHHHhccCccceeeeHhHHHHHHHHHHh---ccCcc---cchHHHHHHHHHHhcCCccccccHHHHHHHHHHHh
Confidence 3467888888888888889999999998887643 11111 1222333333 333344566777776664421
Q ss_pred h--hhHHhhcccchHHHHHHHhcCCChHHHHHHHHHHHhhcCCcccHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHH
Q 001833 451 T--LRDQIGDVQGCILLLVTMASSDDNQASRDAQELLENLSFSDDNVVQMAKANYFKHLLQRLSAGPESVKMRMATTLAE 528 (1008)
Q Consensus 451 ~--~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~~~n~~~i~~~g~v~~Lv~~L~~~~~~~~~~aa~~L~~ 528 (1008)
- -...+. ..+.||.|-.-++.-++.++...+.-|..|-.-++-.-.-.-...++-|...|.+.+++++..+-.+|.+
T Consensus 156 Vte~~~tFs-L~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~ 234 (675)
T KOG0212|consen 156 VTESASTFS-LPEFIPLLRERIYVINPMTRQFLVSWLYVLDSVPDLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSE 234 (675)
T ss_pred ccccccccC-HHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCcHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence 1 111222 2567777777777778888888888887775444432222235567778888999999999777776665
Q ss_pred HcCChhhHHHH-hhcCcHHHHHHHhccCCHHHHHHHHHHHHHhhCCCchhHHHHhcCChHHHHHHhcccCCCCcchHHHH
Q 001833 529 MELTDHHKASL-LEGNVLGPLLHLVSRGDIQMKKVAVKALRNLSSVPQNGLQMIKEGAVGPLVDLLLHHSSSSSSLREET 607 (1008)
Q Consensus 529 Ls~~~~~k~~i-~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~~~~~~~i~~~G~v~~Ll~ll~~~~~~~~~~~~~a 607 (1008)
+-..-.++... -....++.++.-+.++++..+..|+.-|.....-+...--..-+|++..++.++.+... ..+++.+
T Consensus 235 fL~eI~s~P~s~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~s~~e~--~~i~~~a 312 (675)
T KOG0212|consen 235 FLAEIRSSPSSMDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDLLLYLSGILTAILPCLSDTEE--MSIKEYA 312 (675)
T ss_pred HHHHHhcCccccCcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcchhhhhhhhhhhcccCCCCCcc--ccHHHHH
Confidence 52111111111 12457889999999999999999988888777544444444456777777777765432 1234433
Q ss_pred H---HHHHHHhccccccccCCcccccccchhHHHHHHHhhccCChHHHHHHHHHHHHhccCCChhhHHHHhhhcCChHHH
Q 001833 608 A---TAIMHLAVSTMYQESSQTPVTLLESDKEIFMLFSLINLTGPNVQQRILQTFNALCRSPSAGNIKTTLTQCSAIPVL 684 (1008)
Q Consensus 608 ~---~~L~nLa~~~~~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~aL~~L~~~~~~~~~~~~i~e~~~i~~L 684 (1008)
. ..|..+.......+ -+.-...+..+...+++...+.+-.++..+.-|-....+.- ........+.|
T Consensus 313 ~~~n~~l~~l~s~~~~~~-------~id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p~ql---~~h~~~if~tL 382 (675)
T KOG0212|consen 313 QMVNGLLLKLVSSERLKE-------EIDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKAPGQL---LVHNDSIFLTL 382 (675)
T ss_pred HHHHHHHHHHHhhhhhcc-------ccchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCcchh---hhhccHHHHHH
Confidence 3 33455554332221 13333456677777888889999999988888876433322 23445678899
Q ss_pred HHhhccCChhHHHHHHHHHHHhccCCChhHHHhhhcccchHHHHHHhcCCCCHHHHHHHHHHHhcCCC
Q 001833 685 VQLCEHDNENVRANAVKLFCCLVDDGDEAIIREHVGQKCLETLVTIIQSSHNEEEIASAMGILSKLPE 752 (1008)
Q Consensus 685 v~ll~~~~~~v~~~a~~~L~~Ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~v~~~a~~~L~nL~~ 752 (1008)
+.-+.+.++++...++..+++++.+....+. ...+..|+++... +..-....+.-++..||.
T Consensus 383 L~tLsd~sd~vvl~~L~lla~i~~s~~~~~~-----~~fl~sLL~~f~e-~~~~l~~Rg~lIIRqlC~ 444 (675)
T KOG0212|consen 383 LKTLSDRSDEVVLLALSLLASICSSSNSPNL-----RKFLLSLLEMFKE-DTKLLEVRGNLIIRQLCL 444 (675)
T ss_pred HHhhcCchhHHHHHHHHHHHHHhcCcccccH-----HHHHHHHHHHHhh-hhHHHHhhhhHHHHHHHH
Confidence 9999999999999999999999854432211 1233344444444 222233344455555554
No 89
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.02 E-value=0.0035 Score=73.40 Aligned_cols=365 Identities=19% Similarity=0.151 Sum_probs=216.3
Q ss_pred hHHHHHHH-HHHHhccCchhhHHhhcccchHHHHHHHhcCCChHHHHHHHHHHHhhcCCcccHHHHHhcCcHHHHHHHHh
Q 001833 434 EERKLAVA-LLLELSTCNTLRDQIGDVQGCILLLVTMASSDDNQASRDAQELLENLSFSDDNVVQMAKANYFKHLLQRLS 512 (1008)
Q Consensus 434 ~~~~~A~~-~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~~~n~~~i~~~g~v~~Lv~~L~ 512 (1008)
+.+.+|+. ++..++...++ .+..+.++......|-+.++.+-.-|.|-+....... -+++..++.=..
T Consensus 28 ~kr~~a~kkvIa~Mt~G~Dv-------SslF~dvvk~~~T~dlelKKlvyLYl~nYa~~~P~~a----~~avnt~~kD~~ 96 (734)
T KOG1061|consen 28 EKRKDAVKKVIAYMTVGKDV-------SSLFPDVVKCMQTRDLELKKLVYLYLMNYAKGKPDLA----ILAVNTFLKDCE 96 (734)
T ss_pred hhHHHHHHHHHhcCccCcch-------HhhhHHHHhhcccCCchHHHHHHHHHHHhhccCchHH----HhhhhhhhccCC
Confidence 33444444 45555555433 4556667777777787777766666666654333322 245555655566
Q ss_pred cCCHHHHHHHHHHHHHHcCChhhHHHHhhcCcHHHHHHHhccCCHHHHHHHHHHHHHhhCCCchhHHHHhcCChHHHHHH
Q 001833 513 AGPESVKMRMATTLAEMELTDHHKASLLEGNVLGPLLHLVSRGDIQMKKVAVKALRNLSSVPQNGLQMIKEGAVGPLVDL 592 (1008)
Q Consensus 513 ~~~~~~~~~aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~~~~~~~i~~~G~v~~Ll~l 592 (1008)
++++.+|..|.+.++.+-...-. .-...+|.+.+++.++.++..|+-+..++-. .+.+.....|.++.|-.+
T Consensus 97 d~np~iR~lAlrtm~~l~v~~i~------ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~--~~~~~~~~~gl~~~L~~l 168 (734)
T KOG1061|consen 97 DPNPLIRALALRTMGCLRVDKIT------EYLCDPLLKCLKDDDPYVRKTAAVCVAKLFD--IDPDLVEDSGLVDALKDL 168 (734)
T ss_pred CCCHHHHHHHhhceeeEeehHHH------HHHHHHHHHhccCCChhHHHHHHHHHHHhhc--CChhhccccchhHHHHHH
Confidence 67888888888777765432211 1245788999999999999999988888753 355566788999999999
Q ss_pred hcccCCCCcchHHHHHHHHHHHhccccccccCCcccccccchhHHHHHHHhhccCChHHHHHHHHHHHHhccCCChhhHH
Q 001833 593 LLHHSSSSSSLREETATAIMHLAVSTMYQESSQTPVTLLESDKEIFMLFSLINLTGPNVQQRILQTFNALCRSPSAGNIK 672 (1008)
Q Consensus 593 l~~~~~~~~~~~~~a~~~L~nLa~~~~~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~aL~~L~~~~~~~~~~ 672 (1008)
+.+.+ +.+..+|+.+|..+.+.+..... .......+..++..++..+.--|..++.++..-.-.+. .+
T Consensus 169 l~D~~---p~VVAnAlaaL~eI~e~~~~~~~------~~l~~~~~~~lL~al~ec~EW~qi~IL~~l~~y~p~d~-~e-- 236 (734)
T KOG1061|consen 169 LSDSN---PMVVANALAALSEIHESHPSVNL------LELNPQLINKLLEALNECTEWGQIFILDCLAEYVPKDS-RE-- 236 (734)
T ss_pred hcCCC---chHHHHHHHHHHHHHHhCCCCCc------ccccHHHHHHHHHHHHHhhhhhHHHHHHHHHhcCCCCc-hh--
Confidence 98443 78999999999999886543221 22233445555555554444444444444444332211 11
Q ss_pred HHhhhcCChHHHHHhhccCChhHHHHHHHHHHHhccCCChhHHHhhhcccchHHHHHHhcCCCCHHHHHHHHHHHhcCC-
Q 001833 673 TTLTQCSAIPVLVQLCEHDNENVRANAVKLFCCLVDDGDEAIIREHVGQKCLETLVTIIQSSHNEEEIASAMGILSKLP- 751 (1008)
Q Consensus 673 ~~i~e~~~i~~Lv~ll~~~~~~v~~~a~~~L~~Ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~v~~~a~~~L~nL~- 751 (1008)
+. ..+..+...+.+.+..+...+.+.+.++...... .....-....+.|+.++...+ +.+..+++=+.-+.
T Consensus 237 -a~---~i~~r~~p~Lqh~n~avvlsavKv~l~~~~~~~~--~~~~~~~K~~~pl~tlls~~~--e~qyvaLrNi~lil~ 308 (734)
T KOG1061|consen 237 -AE---DICERLTPRLQHANSAVVLSAVKVILQLVKYLKQ--VNELLFKKVAPPLVTLLSSES--EIQYVALRNINLILQ 308 (734)
T ss_pred -HH---HHHHHhhhhhccCCcceEeehHHHHHHHHHHHHH--HHHHHHHHhcccceeeecccc--hhhHHHHhhHHHHHH
Confidence 11 2456677778888888888888888777632222 222222345566666666543 33333332211111
Q ss_pred ---------------C--Chhh-----HH---HHHhcCCHHHHHHHhhCCCCCCCchhhHHHHHHHHHHHhcCCCCHHHH
Q 001833 752 ---------------E--VPQF-----TQ---WLLDAGALPIVLNFLKNGRQNDPNRFQVVENAVGALRRFTAPTNLEWQ 806 (1008)
Q Consensus 752 ---------------~--~~~~-----~~---~l~~~g~l~~Lv~lL~~~~~~~~~~~~v~~~a~~aL~~L~~~~~~~~~ 806 (1008)
. +|-. .+ .+....-++.++.=+..-. ...+.+....+++++++++.-. ++.
T Consensus 309 ~~p~~~~~~~~~Ff~kynDPiYvK~eKleil~~la~~~nl~qvl~El~eYa--tevD~~fvrkaIraig~~aik~-e~~- 384 (734)
T KOG1061|consen 309 KRPEILKVEIKVFFCKYNDPIYVKLEKLEILIELANDANLAQVLAELKEYA--TEVDVDFVRKAVRAIGRLAIKA-EQS- 384 (734)
T ss_pred hChHHHHhHhHeeeeecCCchhhHHHHHHHHHHHhhHhHHHHHHHHHHHhh--hhhCHHHHHHHHHHhhhhhhhh-hhh-
Confidence 1 1100 01 1111111222222121100 0156788899999999998731 111
Q ss_pred HHHHHcCChHHHHHHhhcCChHHHHHHHHHHhhhhhcCCC
Q 001833 807 KRAAEAGVIPKLVQLLEYGTTLTKEHAATSLARFSKNSLG 846 (1008)
Q Consensus 807 ~~l~~~g~l~~Lv~lL~~~~~~v~~~Aa~aL~nLs~~~~~ 846 (1008)
++.++.|+++++.....+...+...+..+.+.-++
T Consensus 385 -----~~cv~~lLell~~~~~yvvqE~~vvi~dilRkyP~ 419 (734)
T KOG1061|consen 385 -----NDCVSILLELLETKVDYVVQEAIVVIRDILRKYPN 419 (734)
T ss_pred -----hhhHHHHHHHHhhcccceeeehhHHHHhhhhcCCC
Confidence 78899999999988777788888888888765443
No 90
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=98.01 E-value=0.0014 Score=75.07 Aligned_cols=343 Identities=15% Similarity=0.090 Sum_probs=207.3
Q ss_pred chHHHHHHHhcCCChHHHHHHHHHHHhhcCCcccHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHHcCChhhHHHHh
Q 001833 461 GCILLLVTMASSDDNQASRDAQELLENLSFSDDNVVQMAKANYFKHLLQRLSAGPESVKMRMATTLAEMELTDHHKASLL 540 (1008)
Q Consensus 461 g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~~~n~~~i~~~g~v~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~~~~k~~i~ 540 (1008)
..+..|.+-+..+.+.++.....+|..+....+... ..-..+.+.+.+..+.-..+..++..++.+..+.. -..+.
T Consensus 96 ~~~~~~~~~~~tps~~~q~~~~~~l~~~~~~~~~~~---~~~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~~-i~~~~ 171 (569)
T KOG1242|consen 96 SIIEILLEELDTPSKSVQRAVSTCLPPLVVLSKGLS---GEYVLELLLELLTSTKIAERAGAAYGLAGLVNGLG-IESLK 171 (569)
T ss_pred HHHHHHHHhcCCCcHHHHHHHHHHhhhHHHHhhccC---HHHHHHHHHHHhccccHHHHhhhhHHHHHHHcCcH-Hhhhh
Confidence 445667777778888888888888776643222111 12234456677776777777788888877754332 22355
Q ss_pred hcCcHHHHHHHhccCCHH-HHHHHHHHHHHhhCCCchhHHHHhcCChHHHHHHhcccCCCCcchHHHHHHHHHHHhcccc
Q 001833 541 EGNVLGPLLHLVSRGDIQ-MKKVAVKALRNLSSVPQNGLQMIKEGAVGPLVDLLLHHSSSSSSLREETATAIMHLAVSTM 619 (1008)
Q Consensus 541 ~~g~i~~Lv~lL~~~~~~-~~~~A~~aL~~L~~~~~~~~~i~~~G~v~~Ll~ll~~~~~~~~~~~~~a~~~L~nLa~~~~ 619 (1008)
+.+++..|.+.+.+.... .++.+.-+.-..+.+-. ...+.+.+|.+-.++.+-.+....+++.|..+...+...-.
T Consensus 172 ~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg---~~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~ 248 (569)
T KOG1242|consen 172 EFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLG---PPFEPYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLS 248 (569)
T ss_pred hhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcC---CCCCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcC
Confidence 677888888888776443 34434444433433111 23455666666666665444336677777766666654221
Q ss_pred ccccCCcccccccchhHHHHHHHhhccCChHHHHHHHHHHHHhccCCChhhHHHHhhhcCChHHHHHhhccCChhHHHHH
Q 001833 620 YQESSQTPVTLLESDKEIFMLFSLINLTGPNVQQRILQTFNALCRSPSAGNIKTTLTQCSAIPVLVQLCEHDNENVRANA 699 (1008)
Q Consensus 620 ~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~aL~~L~~~~~~~~~~~~i~e~~~i~~Lv~ll~~~~~~v~~~a 699 (1008)
. ...+..+++++.-+....-..+..++..+..++... ..+-.......+|.+.+.+.+..+++|..+
T Consensus 249 ~----------~aVK~llpsll~~l~~~kWrtK~aslellg~m~~~a---p~qLs~~lp~iiP~lsevl~DT~~evr~a~ 315 (569)
T KOG1242|consen 249 A----------YAVKLLLPSLLGSLLEAKWRTKMASLELLGAMADCA---PKQLSLCLPDLIPVLSEVLWDTKPEVRKAG 315 (569)
T ss_pred c----------chhhHhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhc---hHHHHHHHhHhhHHHHHHHccCCHHHHHHH
Confidence 1 111233445554444445566677888888887642 222233445689999999999999999999
Q ss_pred HHHHHHhccCCChhHHHhhhcccchHHHHHHhcCCCCHHHHHHHHHHHhcCCC----ChhhHHHHHhcCCHHHHHHHhhC
Q 001833 700 VKLFCCLVDDGDEAIIREHVGQKCLETLVTIIQSSHNEEEIASAMGILSKLPE----VPQFTQWLLDAGALPIVLNFLKN 775 (1008)
Q Consensus 700 ~~~L~~Ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~v~~~a~~~L~nL~~----~~~~~~~l~~~g~l~~Lv~lL~~ 775 (1008)
..++..+++...+..++ ..++.|++.+.+++. .+ ..++..|+.-.. ++.... + .+|.|..-+..
T Consensus 316 ~~~l~~~~svidN~dI~-----~~ip~Lld~l~dp~~-~~-~e~~~~L~~ttFV~~V~~psLa-l----mvpiL~R~l~e 383 (569)
T KOG1242|consen 316 IETLLKFGSVIDNPDIQ-----KIIPTLLDALADPSC-YT-PECLDSLGATTFVAEVDAPSLA-L----MVPILKRGLAE 383 (569)
T ss_pred HHHHHHHHHhhccHHHH-----HHHHHHHHHhcCccc-ch-HHHHHhhcceeeeeeecchhHH-H----HHHHHHHHHhh
Confidence 99999987444443343 357888888888642 11 233444433222 111111 1 24555555555
Q ss_pred CCCCCCchhhHHHHHHHHHHHhcCCC-CHHHHHHHHHcCChHHHHHHhhcCChHHHHHHHHHHhhhhh
Q 001833 776 GRQNDPNRFQVVENAVGALRRFTAPT-NLEWQKRAAEAGVIPKLVQLLEYGTTLTKEHAATSLARFSK 842 (1008)
Q Consensus 776 ~~~~~~~~~~v~~~a~~aL~~L~~~~-~~~~~~~l~~~g~l~~Lv~lL~~~~~~v~~~Aa~aL~nLs~ 842 (1008)
.+..+++.++.++.|++.-- ++.....+. ..++|-|-..+.+..|++|.-++.+|+.+-.
T Consensus 384 ------Rst~~kr~t~~IidNm~~LveDp~~lapfl-~~Llp~lk~~~~d~~PEvR~vaarAL~~l~e 444 (569)
T KOG1242|consen 384 ------RSTSIKRKTAIIIDNMCKLVEDPKDLAPFL-PSLLPGLKENLDDAVPEVRAVAARALGALLE 444 (569)
T ss_pred ------ccchhhhhHHHHHHHHHHhhcCHHHHhhhH-HHHhhHHHHHhcCCChhHHHHHHHHHHHHHH
Confidence 45677899999999998742 333322221 2345555555556789999999999988764
No 91
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=98.00 E-value=4.4e-06 Score=61.48 Aligned_cols=39 Identities=38% Similarity=0.865 Sum_probs=35.9
Q ss_pred ccccccccCCce-eccCcccccHHHHHHHHh-cCCCCCCCc
Q 001833 268 CPITRDVMVDPV-ETSSGQTFERSAIEKWFS-DGNNLCPLT 306 (1008)
Q Consensus 268 cpi~~~~m~dpv-~~~~g~t~~r~~i~~w~~-~~~~~cp~~ 306 (1008)
|||+++.+.+|+ ++.+||+|++.+|.+|+. .+...||.+
T Consensus 1 C~iC~~~~~~~~~~~~C~H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDPVILLPCGHSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSEEEETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccCCCEEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence 899999999999 889999999999999998 667789974
No 92
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.00 E-value=0.013 Score=68.28 Aligned_cols=327 Identities=15% Similarity=0.153 Sum_probs=182.1
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHhhcCCcccHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHH-cCChhhHHHHhhc
Q 001833 464 LLLVTMASSDDNQASRDAQELLENLSFSDDNVVQMAKANYFKHLLQRLSAGPESVKMRMATTLAEM-ELTDHHKASLLEG 542 (1008)
Q Consensus 464 ~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~~~n~~~i~~~g~v~~Lv~~L~~~~~~~~~~aa~~L~~L-s~~~~~k~~i~~~ 542 (1008)
..+-+-|+.+++.++..|+.+|..+ |..++..=.+-.+-+...+.++-+|..||-++-.| +...+.+..
T Consensus 111 ntfQk~L~DpN~LiRasALRvlSsI------Rvp~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~e~k~q---- 180 (968)
T KOG1060|consen 111 NTFQKALKDPNQLIRASALRVLSSI------RVPMIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDPEQKDQ---- 180 (968)
T ss_pred HHHHhhhcCCcHHHHHHHHHHHHhc------chhhHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCChhhHHH----
Confidence 3444456667777887777777544 11111111111122334566777888888888887 333344432
Q ss_pred CcHHHHHHHhccCCHHHHHHHHHHHHHhhCCCchhHHHHhcCChHHHHHHhcccCCCCcchHHHHHHHHHHHhccccccc
Q 001833 543 NVLGPLLHLVSRGDIQMKKVAVKALRNLSSVPQNGLQMIKEGAVGPLVDLLLHHSSSSSSLREETATAIMHLAVSTMYQE 622 (1008)
Q Consensus 543 g~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~~~~~~~i~~~G~v~~Ll~ll~~~~~~~~~~~~~a~~~L~nLa~~~~~~~ 622 (1008)
.+..+=.+|.+.+|.+.-.|+.|.-.+|- ++-.++ .+-...|++++.+-.++ -|......|..-|...-...
T Consensus 181 -L~e~I~~LLaD~splVvgsAv~AF~evCP---erldLI-HknyrklC~ll~dvdeW---gQvvlI~mL~RYAR~~l~~P 252 (968)
T KOG1060|consen 181 -LEEVIKKLLADRSPLVVGSAVMAFEEVCP---ERLDLI-HKNYRKLCRLLPDVDEW---GQVVLINMLTRYARHQLPDP 252 (968)
T ss_pred -HHHHHHHHhcCCCCcchhHHHHHHHHhch---hHHHHh-hHHHHHHHhhccchhhh---hHHHHHHHHHHHHHhcCCCc
Confidence 33455567888888888888888888874 222222 12344555555543322 23333444443333110000
Q ss_pred c--------------CCccccc----ccchhHHHHH----HHhhccCChHHHHHHHHHHHHhccCCChhhHHHHhhhcCC
Q 001833 623 S--------------SQTPVTL----LESDKEIFML----FSLINLTGPNVQQRILQTFNALCRSPSAGNIKTTLTQCSA 680 (1008)
Q Consensus 623 ~--------------~~~~~~~----l~~~~~i~~L----~~ll~~~~~~v~~~al~aL~~L~~~~~~~~~~~~i~e~~~ 680 (1008)
. .+....- ...+..+..| -.++.+.++.+...++++++.++... ....+
T Consensus 253 ~~~~~~~e~n~~~~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl~S~n~sVVmA~aql~y~lAP~~---------~~~~i 323 (968)
T KOG1060|consen 253 TVVDSSLEDNGRSCNLKDKYNEIRTPYVNDPDLKLLLQSTKPLLQSRNPSVVMAVAQLFYHLAPKN---------QVTKI 323 (968)
T ss_pred cccccccccCcccccccccccccCCCcccCccHHHHHHhccHHHhcCCcHHHHHHHhHHHhhCCHH---------HHHHH
Confidence 0 0000000 1112223333 34566889999999999999998631 11246
Q ss_pred hHHHHHhhccCChhHHHHHHHHHHHhccCCChhHHHhhhcccchHHHHHHhcCC-CCHHHHHHHHHHHhcCCCChhhHHH
Q 001833 681 IPVLVQLCEHDNENVRANAVKLFCCLVDDGDEAIIREHVGQKCLETLVTIIQSS-HNEEEIASAMGILSKLPEVPQFTQW 759 (1008)
Q Consensus 681 i~~Lv~ll~~~~~~v~~~a~~~L~~Ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~-~~~~v~~~a~~~L~nL~~~~~~~~~ 759 (1008)
++.|+.+|++. .+++.-.+..+..++ ...+... .|.+-...-.+ +...++.--+.+|.+|+.......
T Consensus 324 ~kaLvrLLrs~-~~vqyvvL~nIa~~s-~~~~~lF--------~P~lKsFfv~ssDp~~vk~lKleiLs~La~esni~~- 392 (968)
T KOG1060|consen 324 AKALVRLLRSN-REVQYVVLQNIATIS-IKRPTLF--------EPHLKSFFVRSSDPTQVKILKLEILSNLANESNISE- 392 (968)
T ss_pred HHHHHHHHhcC-CcchhhhHHHHHHHH-hcchhhh--------hhhhhceEeecCCHHHHHHHHHHHHHHHhhhccHHH-
Confidence 88899988764 455555555566665 2122111 22222222222 233445555677888775222211
Q ss_pred HHhcCCHHHHHHHhhCCCCCCCchhhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHHHhhcCChHHHHHHHHHHhh
Q 001833 760 LLDAGALPIVLNFLKNGRQNDPNRFQVVENAVGALRRFTAPTNLEWQKRAAEAGVIPKLVQLLEYGTTLTKEHAATSLAR 839 (1008)
Q Consensus 760 l~~~g~l~~Lv~lL~~~~~~~~~~~~v~~~a~~aL~~L~~~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~v~~~Aa~aL~n 839 (1008)
+++-+..++++ .+..+...++.+|++++.. .-.+ ....+.-|+.++++.+..|..+++..+..
T Consensus 393 -----ILrE~q~YI~s------~d~~faa~aV~AiGrCA~~-~~sv-----~~tCL~gLv~Llsshde~Vv~eaV~vIk~ 455 (968)
T KOG1060|consen 393 -----ILRELQTYIKS------SDRSFAAAAVKAIGRCASR-IGSV-----TDTCLNGLVQLLSSHDELVVAEAVVVIKR 455 (968)
T ss_pred -----HHHHHHHHHhc------CchhHHHHHHHHHHHHHHh-hCch-----hhHHHHHHHHHHhcccchhHHHHHHHHHH
Confidence 24556666666 4446888889999988764 2222 23346778999999999999999999999
Q ss_pred hhhcCC
Q 001833 840 FSKNSL 845 (1008)
Q Consensus 840 Ls~~~~ 845 (1008)
|....+
T Consensus 456 Llq~~p 461 (968)
T KOG1060|consen 456 LLQKDP 461 (968)
T ss_pred HHhhCh
Confidence 985443
No 93
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=97.97 E-value=2.6e-06 Score=66.42 Aligned_cols=58 Identities=24% Similarity=0.362 Sum_probs=33.3
Q ss_pred cccccccccccCCceec-cCcccccHHHHHHHHhcCCCCCCCcCccCCCCCCccCHhhHHHH
Q 001833 265 SFYCPITRDVMVDPVET-SSGQTFERSAIEKWFSDGNNLCPLTMTVLDTSILRPNKTLRQSI 325 (1008)
Q Consensus 265 ~~~cpi~~~~m~dpv~~-~~g~t~~r~~i~~w~~~~~~~cp~~~~~l~~~~l~pN~~l~~~I 325 (1008)
-++|++|.++|++||.+ .|.|.|++.||...+. ..||++..|-...++.-|..|.++|
T Consensus 7 lLrCs~C~~~l~~pv~l~~CeH~fCs~Ci~~~~~---~~CPvC~~Paw~qD~~~NrqLd~~i 65 (65)
T PF14835_consen 7 LLRCSICFDILKEPVCLGGCEHIFCSSCIRDCIG---SECPVCHTPAWIQDIQINRQLDSMI 65 (65)
T ss_dssp TTS-SSS-S--SS-B---SSS--B-TTTGGGGTT---TB-SSS--B-S-SS----HHHHHHH
T ss_pred hcCCcHHHHHhcCCceeccCccHHHHHHhHHhcC---CCCCCcCChHHHHHHHhhhhhhccC
Confidence 47999999999999975 7999999999988663 3499999999999999999988776
No 94
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=97.97 E-value=0.0048 Score=74.40 Aligned_cols=542 Identities=13% Similarity=0.090 Sum_probs=303.3
Q ss_pred chHHHHHHHcCCCHHHHHHHHHHHHHhccCChhhHHHhhccCCcHHHHHHHhcc--ChhHHHHHHHHHHHhcc-CchhhH
Q 001833 378 YIPKLIYLLGSKNRDVRNRALIILHILVKDSNDTKERLANGDDAVESIVRSLGR--RIEERKLAVALLLELST-CNTLRD 454 (1008)
Q Consensus 378 ~i~~L~~lL~s~~~~~~~~Al~~L~~Ls~~~~~~k~~i~~~~g~i~~Lv~~L~~--~~~~~~~A~~~L~~Ls~-~~~~~~ 454 (1008)
++|.+-+.. ..+.+++..+..-+..+.... ..+ .+. +.+......+.. ...+++.++..|...+. .+.-..
T Consensus 122 lipf~~e~~-~~~dev~~~~a~~~~~~~~~v-~~~-~~~---~~ll~~le~l~~~eet~vr~k~ve~l~~v~~~~~~~~~ 195 (759)
T KOG0211|consen 122 LIPFLTEAE-DDEDEVLLDLAEQLGTFLPDV-GGP-EYA---HMLLPPLELLATVEETGVREKAVESLLKVAVGLPKEKL 195 (759)
T ss_pred hhhHHHHhc-cchhHHHHHHHHHhcccchhc-cch-hHH---HHhhHHHHhhhHHHHHHHHHHHHHHHHHHHHhcChHHH
Confidence 577777666 445556655555554443321 111 111 111111222221 23346666666666543 221111
Q ss_pred HhhcccchHHHHHHHhcCCCh-HHHHHHHHHHHhhcCCcccHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHHcCCh
Q 001833 455 QIGDVQGCILLLVTMASSDDN-QASRDAQELLENLSFSDDNVVQMAKANYFKHLLQRLSAGPESVKMRMATTLAEMELTD 533 (1008)
Q Consensus 455 ~i~~~~g~i~~Lv~lL~~~~~-~~~~~a~~aL~~Ls~~~~n~~~i~~~g~v~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~~ 533 (1008)
. .-.-+|+..+..++- +.+..++.+...+...-.. ..++...-+..-++-.+.++.++..++.-+++++..-
T Consensus 196 -~----~~lv~l~~~l~~~d~~~sr~sacglf~~~~~~~~~--~~vk~elr~~~~~lc~d~~~~Vr~~~a~~l~~~a~~~ 268 (759)
T KOG0211|consen 196 -R----EHLVPLLKRLATGDWFQSRLSACGLFGKLYVSLPD--DAVKRELRPIVQSLCQDDTPMVRRAVASNLGNIAKVL 268 (759)
T ss_pred -H----HHHHHHHHHccchhhhhcchhhhhhhHHhccCCCh--HHHHHHHHHHHHhhccccchhhHHHHHhhhHHHHHHH
Confidence 0 111223333333222 2344444555444322221 1222233333334445567788888888888886544
Q ss_pred hhHHHHhhcCcHHHHHHHhccCCHHHHHHHHHHHHHhhCCCchhHHHHhcCChHHHHHHhcccCCCCcchHHHHHHHHHH
Q 001833 534 HHKASLLEGNVLGPLLHLVSRGDIQMKKVAVKALRNLSSVPQNGLQMIKEGAVGPLVDLLLHHSSSSSSLREETATAIMH 613 (1008)
Q Consensus 534 ~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~~~~~~~i~~~G~v~~Ll~ll~~~~~~~~~~~~~a~~~L~n 613 (1008)
.. .....+.++.++++..+....+++.|...+.++...-.... =+..-..+.++....+++ -.+..........
T Consensus 269 ~~--~~~~s~v~~~~~~L~~DdqdsVr~~a~~~~~~l~~l~~~~~-d~~~~~~~~l~~~~~d~~---~~v~~~~~~~~~~ 342 (759)
T KOG0211|consen 269 ES--EIVKSEVLPTLIQLLRDDQDSVREAAVESLVSLLDLLDDDD-DVVKSLTESLVQAVEDGS---WRVSYMVADKFSE 342 (759)
T ss_pred HH--HHHHhhccHHHhhhhhcchhhHHHHHHHHHHHHHHhcCCch-hhhhhhhHHHHHHhcChh---HHHHHHHhhhhhh
Confidence 33 56678899999999999989999999999888874211111 112234566777776554 3344555555544
Q ss_pred HhccccccccCCcccccccchhHHHHHHHhhccCChHHHHHHHHHHHHhccCCChhhHHHHhhhcCChHHHHHhhccCCh
Q 001833 614 LAVSTMYQESSQTPVTLLESDKEIFMLFSLINLTGPNVQQRILQTFNALCRSPSAGNIKTTLTQCSAIPVLVQLCEHDNE 693 (1008)
Q Consensus 614 La~~~~~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~aL~~L~~~~~~~~~~~~i~e~~~i~~Lv~ll~~~~~ 693 (1008)
+...-.. . .....-+++...+++....+.+..+..-...++..- +...+..+.....+|.+-.++.+.+.
T Consensus 343 L~~~~~~-~--------~~~~~~~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l-~~~~~~~i~~~~ilp~~~~lv~d~~~ 412 (759)
T KOG0211|consen 343 LSSAVGP-S--------ATRTQLVPPVSNLLKDEEWEVRYAIAKKVQKLACYL-NASCYPNIPDSSILPEVQVLVLDNAL 412 (759)
T ss_pred HHHHhcc-c--------cCcccchhhHHHHhcchhhhhhHHhhcchHHHhhhc-CcccccccchhhhhHHHHHHHhcccc
Confidence 4431111 0 111234566677777666666666555555555431 22223334445567888888888899
Q ss_pred hHHHHHHHHHHHhccCCChhHHHhhhcccchHHHHHHhcCCCCHHHHHHHHHHHhcCCC-ChhhHHHHHhcCCHHHHHHH
Q 001833 694 NVRANAVKLFCCLVDDGDEAIIREHVGQKCLETLVTIIQSSHNEEEIASAMGILSKLPE-VPQFTQWLLDAGALPIVLNF 772 (1008)
Q Consensus 694 ~v~~~a~~~L~~Ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~v~~~a~~~L~nL~~-~~~~~~~l~~~g~l~~Lv~l 772 (1008)
.++.+.+.....++ .-.+ ..-.-....+.++..+++ ...+++......+..+-. ++...........+|.+..+
T Consensus 413 ~vr~a~a~~~~~~~-p~~~---k~~ti~~llp~~~~~l~d-e~~~V~lnli~~ls~~~~v~~v~g~~~~s~slLp~i~el 487 (759)
T KOG0211|consen 413 HVRSALASVITGLS-PILP---KERTISELLPLLIGNLKD-EDPIVRLNLIDKLSLLEEVNDVIGISTVSNSLLPAIVEL 487 (759)
T ss_pred hHHHHHhccccccC-ccCC---cCcCccccChhhhhhcch-hhHHHHHhhHHHHHHHHhccCcccchhhhhhhhhhhhhh
Confidence 99988877777665 1111 000011234444445544 344555555544444333 33333344455567777777
Q ss_pred hhCCCCCCCchhhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHHHhhcCChHHHHHHHHHHhhhhhcCCCCCCCCC
Q 001833 773 LKNGRQNDPNRFQVVENAVGALRRFTAPTNLEWQKRAAEAGVIPKLVQLLEYGTTLTKEHAATSLARFSKNSLGLSRPIP 852 (1008)
Q Consensus 773 L~~~~~~~~~~~~v~~~a~~aL~~L~~~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~v~~~Aa~aL~nLs~~~~~l~~~~~ 852 (1008)
-.+ ....++.+..+.+-.++.. .+. .+.+...-+.+...+.+....++.+|+..+..++.....
T Consensus 488 ~~d------~~wRvr~ail~~ip~la~q---~~~-~~~~~~~~~l~~~~l~d~v~~Ir~~aa~~l~~l~~~~G~------ 551 (759)
T KOG0211|consen 488 AED------LLWRVRLAILEYIPQLALQ---LGV-EFFDEKLAELLRTWLPDHVYSIREAAARNLPALVETFGS------ 551 (759)
T ss_pred ccc------hhHHHHHHHHHHHHHHHHh---hhh-HHhhHHHHHHHHhhhhhhHHHHHHHHHHHhHHHHHHhCc------
Confidence 766 4678888888888877752 222 233333444455555555668999999999888853210
Q ss_pred CCCcccccCCCCCCcccccCcccCcccchhHhhccchHHHHHhhcCCChhhhHHHHHHHHhhhcccccchhhHHHHhcCc
Q 001833 853 KRKGFWCFSPPPEIGCQVHGGLCGIESSFCLLEANAVRPLVRVLEDPDHGACEASLDALVTLIEGERLQNGSKVLEDANA 932 (1008)
Q Consensus 853 ~~~g~~~~~~~~~~~c~vh~~~c~~~~~~~l~~~g~i~~Lv~lL~~~d~~v~~~al~aL~~L~~~~~~~~~~~~i~~~~~ 932 (1008)
.|. ....++.++.+..+++.-.|...+.++..++. -....+.....
T Consensus 552 --------------~w~---------------~~~~i~k~L~~~~q~~y~~R~t~l~si~~la~-----v~g~ei~~~~L 597 (759)
T KOG0211|consen 552 --------------EWA---------------RLEEIPKLLAMDLQDNYLVRMTTLFSIHELAE-----VLGQEITCEDL 597 (759)
T ss_pred --------------chh---------------HHHhhHHHHHHhcCcccchhhHHHHHHHHHHH-----HhccHHHHHHH
Confidence 011 11356677777777778888888888887771 12233455556
Q ss_pred hHHHHHHhcCCChHHHHHHHHHHHHHhcChHHHHHhccccCchhhhhcccCCchhhHHHHHHHHHHhccccC
Q 001833 933 IDRMVRFLSSPSPKLQEKALDSVERIFRLPEFKQKYGKSAQMPLVDLTQRGNSSMKSLSARVLAHLNVLQDQ 1004 (1008)
Q Consensus 933 i~~l~~ll~~~~~~l~~~a~~~L~~l~~~~~~~~~~~~~~~~~Lv~l~~~~~~~~~~~Aa~~L~~L~~~~~~ 1004 (1008)
++.+.++..++.+.||-.++..|.++...-... .......+.+..+.++.+.++|-.|..+.+.+...--+
T Consensus 598 lp~~~~l~~D~vanVR~nvak~L~~i~~~L~~~-~~~~~v~pll~~L~~d~~~dvr~~a~~a~~~i~l~~~~ 668 (759)
T KOG0211|consen 598 LPVFLDLVKDPVANVRINVAKHLPKILKLLDES-VRDEEVLPLLETLSSDQELDVRYRAILAFGSIELSRLE 668 (759)
T ss_pred hHHHHHhccCCchhhhhhHHHHHHHHHhhcchH-HHHHHHHHHHHHhccCcccchhHHHHHHHHHHHHHHHh
Confidence 888999999999999999999998875432211 11111124566677788889999888888776554333
No 95
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=97.97 E-value=0.00083 Score=75.55 Aligned_cols=259 Identities=14% Similarity=0.217 Sum_probs=153.2
Q ss_pred hHHHHHHHhhccCChHHHHHHHHHHHHhccCCChhhHHHHhhhcCChHHHHHhhccCChhHHHHHHHHHHHhccCCChhH
Q 001833 635 KEIFMLFSLINLTGPNVQQRILQTFNALCRSPSAGNIKTTLTQCSAIPVLVQLCEHDNENVRANAVKLFCCLVDDGDEAI 714 (1008)
Q Consensus 635 ~~i~~L~~ll~~~~~~v~~~al~aL~~L~~~~~~~~~~~~i~e~~~i~~Lv~ll~~~~~~v~~~a~~~L~~Ls~~~~~~~ 714 (1008)
-.+..++.+|++..|.++..++.....|+.--.+-.-...+...| ..|.+-+....+++....+.+++.+.+...-..
T Consensus 604 ~ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg--~iLyE~lge~ypEvLgsil~Ai~~I~sv~~~~~ 681 (975)
T COG5181 604 MIVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLG--NILYENLGEDYPEVLGSILKAICSIYSVHRFRS 681 (975)
T ss_pred HHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHh--HHHHHhcCcccHHHHHHHHHHHHHHhhhhcccc
Confidence 356778889999999999999998888764200000011222222 235566667789999888888888763322221
Q ss_pred HHhhhcccchHHHHHHhcCCCCHHHHHHHHHHHhcCCC-Chh---hHHHHHhcCCHHHHHHHhhCCCCCCCchhhHHHHH
Q 001833 715 IREHVGQKCLETLVTIIQSSHNEEEIASAMGILSKLPE-VPQ---FTQWLLDAGALPIVLNFLKNGRQNDPNRFQVVENA 790 (1008)
Q Consensus 715 ~~~~~~~~~i~~Lv~lL~~~~~~~v~~~a~~~L~nL~~-~~~---~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~v~~~a 790 (1008)
.+.. -.|.+|.|.-+|.+. ...++......++.++. .++ .++++. .---|+..|++ .+.+++.+|
T Consensus 682 mqpP-i~~ilP~ltPILrnk-h~Kv~~nti~lvg~I~~~~peyi~~rEWMR---IcfeLvd~Lks------~nKeiRR~A 750 (975)
T COG5181 682 MQPP-ISGILPSLTPILRNK-HQKVVANTIALVGTICMNSPEYIGVREWMR---ICFELVDSLKS------WNKEIRRNA 750 (975)
T ss_pred cCCc-hhhccccccHhhhhh-hHHHhhhHHHHHHHHHhcCcccCCHHHHHH---HHHHHHHHHHH------hhHHHHHhh
Confidence 2212 247899999999884 45677777766666665 232 234432 33457788888 788999999
Q ss_pred HHHHHHhcCCCCHHHHHHHHHcCChHHHHHHhhcCChHHHHHHHHHHhhhhhcCCCCCCCCCCCCcccccCCCCCCcccc
Q 001833 791 VGALRRFTAPTNLEWQKRAAEAGVIPKLVQLLEYGTTLTKEHAATSLARFSKNSLGLSRPIPKRKGFWCFSPPPEIGCQV 870 (1008)
Q Consensus 791 ~~aL~~L~~~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~v~~~Aa~aL~nLs~~~~~l~~~~~~~~g~~~~~~~~~~~c~v 870 (1008)
..+++-++.. +.-++++..|+.-|+..+-..|.-..-+++-.+. ..|
T Consensus 751 ~~tfG~Is~a--------iGPqdvL~~LlnnLkvqeRq~RvctsvaI~iVae-----------~cg-------------- 797 (975)
T COG5181 751 TETFGCISRA--------IGPQDVLDILLNNLKVQERQQRVCTSVAISIVAE-----------YCG-------------- 797 (975)
T ss_pred hhhhhhHHhh--------cCHHHHHHHHHhcchHHHHHhhhhhhhhhhhhHh-----------hcC--------------
Confidence 9998887762 2222333334443433322222222222222221 111
Q ss_pred cCcccCcccchhHhhccchHHHHHhhcCCChhhhHHHHHHHHhhh--cccccchhhHHHHhcCchHHHHHHhcCCChHHH
Q 001833 871 HGGLCGIESSFCLLEANAVRPLVRVLEDPDHGACEASLDALVTLI--EGERLQNGSKVLEDANAIDRMVRFLSSPSPKLQ 948 (1008)
Q Consensus 871 h~~~c~~~~~~~l~~~g~i~~Lv~lL~~~d~~v~~~al~aL~~L~--~~~~~~~~~~~i~~~~~i~~l~~ll~~~~~~l~ 948 (1008)
-..+++.|+.--+.++..|+...+.|++-+. .+. ...+++.. ..+.|.+.+.+.++.-+
T Consensus 798 --------------pfsVlP~lm~dY~TPe~nVQnGvLkam~fmFeyig~---~s~dYvy~--itPlleDAltDrD~vhR 858 (975)
T COG5181 798 --------------PFSVLPTLMSDYETPEANVQNGVLKAMCFMFEYIGQ---ASLDYVYS--ITPLLEDALTDRDPVHR 858 (975)
T ss_pred --------------chhhHHHHHhcccCchhHHHHhHHHHHHHHHHHHHH---HHHHHHHH--hhHHHHhhhcccchHHH
Confidence 1235666766666778889999999998887 221 22232222 24556666777777777
Q ss_pred HHHHHHHHHH
Q 001833 949 EKALDSVERI 958 (1008)
Q Consensus 949 ~~a~~~L~~l 958 (1008)
+.|..++..+
T Consensus 859 qta~nvI~Hl 868 (975)
T COG5181 859 QTAMNVIRHL 868 (975)
T ss_pred HHHHHHHHHH
Confidence 7776666554
No 96
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=97.95 E-value=0.0024 Score=76.90 Aligned_cols=533 Identities=14% Similarity=0.112 Sum_probs=300.7
Q ss_pred hHHHHHHHcCCCHHHHHHHHHHHHHhccCChhhHHHhhccCCcHHHHHHHhccChhHHHHHHHHHHHhccCchhhHHhhc
Q 001833 379 IPKLIYLLGSKNRDVRNRALIILHILVKDSNDTKERLANGDDAVESIVRSLGRRIEERKLAVALLLELSTCNTLRDQIGD 458 (1008)
Q Consensus 379 i~~L~~lL~s~~~~~~~~Al~~L~~Ls~~~~~~k~~i~~~~g~i~~Lv~~L~~~~~~~~~A~~~L~~Ls~~~~~~~~i~~ 458 (1008)
+..+..-++..+-..+.++..-+.+++...-..+. . .-.++.+.....+..+....++.-+..+.........-
T Consensus 84 ia~l~~e~~~~di~~r~~~~~~l~~~a~~~~~~~t---r-~~lipf~~e~~~~~dev~~~~a~~~~~~~~~v~~~~~~-- 157 (759)
T KOG0211|consen 84 IAVLIDELSNTDIQLRLNSGRKLSNLALALGVERT---R-LELIPFLTEAEDDEDEVLLDLAEQLGTFLPDVGGPEYA-- 157 (759)
T ss_pred HHHHhhccCchhhhhhhhhhccccchhhhcccchh---h-hhhhhHHHHhccchhHHHHHHHHHhcccchhccchhHH--
Confidence 34444445544444556666666555432212221 1 24555666666444455555555555554432222211
Q ss_pred ccchHHHHHHHhcCCChHHHHHHHHHHHhhcC-CcccHHHHHhcCcHHHHHHHHhcCC-HHHHHHHHHHHHHHcCChhhH
Q 001833 459 VQGCILLLVTMASSDDNQASRDAQELLENLSF-SDDNVVQMAKANYFKHLLQRLSAGP-ESVKMRMATTLAEMELTDHHK 536 (1008)
Q Consensus 459 ~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~-~~~n~~~i~~~g~v~~Lv~~L~~~~-~~~~~~aa~~L~~Ls~~~~~k 536 (1008)
.-..+.+-.+.......++++++..|...+. .++... ...+-+++..+..+. -..+..++.+++.....-..
T Consensus 158 -~~ll~~le~l~~~eet~vr~k~ve~l~~v~~~~~~~~~----~~~lv~l~~~l~~~d~~~sr~sacglf~~~~~~~~~- 231 (759)
T KOG0211|consen 158 -HMLLPPLELLATVEETGVREKAVESLLKVAVGLPKEKL----REHLVPLLKRLATGDWFQSRLSACGLFGKLYVSLPD- 231 (759)
T ss_pred -HHhhHHHHhhhHHHHHHHHHHHHHHHHHHHHhcChHHH----HHHHHHHHHHccchhhhhcchhhhhhhHHhccCCCh-
Confidence 1112333333334445567777777776643 222111 112233344443331 11234455555555332211
Q ss_pred HHHhhcCcHHHHHHHhccCCHHHHHHHHHHHHHhhCCCchhHHHHhcCChHHHHHHhcccCCCCcchHHHHHHHHHHHhc
Q 001833 537 ASLLEGNVLGPLLHLVSRGDIQMKKVAVKALRNLSSVPQNGLQMIKEGAVGPLVDLLLHHSSSSSSLREETATAIMHLAV 616 (1008)
Q Consensus 537 ~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~~~~~~~i~~~G~v~~Ll~ll~~~~~~~~~~~~~a~~~L~nLa~ 616 (1008)
.-++...-+..-++..+.++.++..++.=+.+++..-.. .....++++.+..+..+.. ..+++.|...+.++..
T Consensus 232 -~~vk~elr~~~~~lc~d~~~~Vr~~~a~~l~~~a~~~~~--~~~~s~v~~~~~~L~~Ddq---dsVr~~a~~~~~~l~~ 305 (759)
T KOG0211|consen 232 -DAVKRELRPIVQSLCQDDTPMVRRAVASNLGNIAKVLES--EIVKSEVLPTLIQLLRDDQ---DSVREAAVESLVSLLD 305 (759)
T ss_pred -HHHHHHHHHHHHhhccccchhhHHHHHhhhHHHHHHHHH--HHHHhhccHHHhhhhhcch---hhHHHHHHHHHHHHHH
Confidence 011223334455667777889999999888888753322 6677889999999998766 4588888888888875
Q ss_pred cccccccCCcccccccchhHHHHHHHhhccCChHHHHHHHHHHHHhccCCChhhHHHHhhhcCChHHHHHhhccCChhHH
Q 001833 617 STMYQESSQTPVTLLESDKEIFMLFSLINLTGPNVQQRILQTFNALCRSPSAGNIKTTLTQCSAIPVLVQLCEHDNENVR 696 (1008)
Q Consensus 617 ~~~~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~aL~~L~~~~~~~~~~~~i~e~~~i~~Lv~ll~~~~~~v~ 696 (1008)
.-..... ......+.++......+..++......++.+...-+. ......-++....++.....+.+
T Consensus 306 l~~~~~d--------~~~~~~~~l~~~~~d~~~~v~~~~~~~~~~L~~~~~~-----~~~~~~~~~~~~~l~~~~~~e~r 372 (759)
T KOG0211|consen 306 LLDDDDD--------VVKSLTESLVQAVEDGSWRVSYMVADKFSELSSAVGP-----SATRTQLVPPVSNLLKDEEWEVR 372 (759)
T ss_pred hcCCchh--------hhhhhhHHHHHHhcChhHHHHHHHhhhhhhHHHHhcc-----ccCcccchhhHHHHhcchhhhhh
Confidence 3221100 0124556777777777888888887777777652111 11122346677777777777777
Q ss_pred HHHHHHHHHhccCCChhHHHhhhcccchHHHHHHhcCCCCHHHHHHHHHHHhcCCC-ChhhHHHHHhcCCHHHHHHHhhC
Q 001833 697 ANAVKLFCCLVDDGDEAIIREHVGQKCLETLVTIIQSSHNEEEIASAMGILSKLPE-VPQFTQWLLDAGALPIVLNFLKN 775 (1008)
Q Consensus 697 ~~a~~~L~~Ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~v~~~a~~~L~nL~~-~~~~~~~l~~~g~l~~Lv~lL~~ 775 (1008)
.+.+.-...++...+......+.....++.+-.+..+ .+..++...+..+..+.- .+.. =.-....|.+...+++
T Consensus 373 ~a~a~~~~~l~~~l~~~~~~~i~~~~ilp~~~~lv~d-~~~~vr~a~a~~~~~~~p~~~k~---~ti~~llp~~~~~l~d 448 (759)
T KOG0211|consen 373 YAIAKKVQKLACYLNASCYPNIPDSSILPEVQVLVLD-NALHVRSALASVITGLSPILPKE---RTISELLPLLIGNLKD 448 (759)
T ss_pred HHhhcchHHHhhhcCcccccccchhhhhHHHHHHHhc-ccchHHHHHhccccccCccCCcC---cCccccChhhhhhcch
Confidence 7666655555422222222223333445666666655 455666666666655543 2200 0012345777777777
Q ss_pred CCCCCCchhhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHHHhhcCChHHHHHHHHHHhhhhhcCCCCCCCCCCCC
Q 001833 776 GRQNDPNRFQVVENAVGALRRFTAPTNLEWQKRAAEAGVIPKLVQLLEYGTTLTKEHAATSLARFSKNSLGLSRPIPKRK 855 (1008)
Q Consensus 776 ~~~~~~~~~~v~~~a~~aL~~L~~~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~v~~~Aa~aL~nLs~~~~~l~~~~~~~~ 855 (1008)
..+.++.+..+.+..+-.. ++...........+|.++.+-......++.+..+.+..++....
T Consensus 449 ------e~~~V~lnli~~ls~~~~v-~~v~g~~~~s~slLp~i~el~~d~~wRvr~ail~~ip~la~q~~---------- 511 (759)
T KOG0211|consen 449 ------EDPIVRLNLIDKLSLLEEV-NDVIGISTVSNSLLPAIVELAEDLLWRVRLAILEYIPQLALQLG---------- 511 (759)
T ss_pred ------hhHHHHHhhHHHHHHHHhc-cCcccchhhhhhhhhhhhhhccchhHHHHHHHHHHHHHHHHhhh----------
Confidence 6788999999877666553 33333345566778888888888888899988888888874321
Q ss_pred cccccCCCCCCcccccCcccCcccchhHhhccchHHHHHhhcCCChhhhHHHHHHHHhhh--cccccchhhHHHHhcCch
Q 001833 856 GFWCFSPPPEIGCQVHGGLCGIESSFCLLEANAVRPLVRVLEDPDHGACEASLDALVTLI--EGERLQNGSKVLEDANAI 933 (1008)
Q Consensus 856 g~~~~~~~~~~~c~vh~~~c~~~~~~~l~~~g~i~~Lv~lL~~~d~~v~~~al~aL~~L~--~~~~~~~~~~~i~~~~~i 933 (1008)
..+.....-+.+...+.+....++++|...|..++ .|..|. ...-+
T Consensus 512 -------------------------~~~~~~~~~~l~~~~l~d~v~~Ir~~aa~~l~~l~~~~G~~w~-------~~~~i 559 (759)
T KOG0211|consen 512 -------------------------VEFFDEKLAELLRTWLPDHVYSIREAAARNLPALVETFGSEWA-------RLEEI 559 (759)
T ss_pred -------------------------hHHhhHHHHHHHHhhhhhhHHHHHHHHHHHhHHHHHHhCcchh-------HHHhh
Confidence 00111122223334466667789999999998888 332221 11224
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHHHhcChHHHHHhccc-----cCchhhhhcccCCchhhHHHHHHHHHHhcc
Q 001833 934 DRMVRFLSSPSPKLQEKALDSVERIFRLPEFKQKYGKS-----AQMPLVDLTQRGNSSMKSLSARVLAHLNVL 1001 (1008)
Q Consensus 934 ~~l~~ll~~~~~~l~~~a~~~L~~l~~~~~~~~~~~~~-----~~~~Lv~l~~~~~~~~~~~Aa~~L~~L~~~ 1001 (1008)
+.+.....+++-..|...+..+.- +...+|.. ..+.+.++..+.++++|-.+++.|..+.++
T Consensus 560 ~k~L~~~~q~~y~~R~t~l~si~~------la~v~g~ei~~~~Llp~~~~l~~D~vanVR~nvak~L~~i~~~ 626 (759)
T KOG0211|consen 560 PKLLAMDLQDNYLVRMTTLFSIHE------LAEVLGQEITCEDLLPVFLDLVKDPVANVRINVAKHLPKILKL 626 (759)
T ss_pred HHHHHHhcCcccchhhHHHHHHHH------HHHHhccHHHHHHHhHHHHHhccCCchhhhhhHHHHHHHHHhh
Confidence 555555555555666666555542 22223222 235678899999999999999999876654
No 97
>KOG2042 consensus Ubiquitin fusion degradation protein-2 [Posttranslational modification, protein turnover, chaperones]
Probab=97.94 E-value=8.5e-06 Score=97.55 Aligned_cols=71 Identities=27% Similarity=0.464 Sum_probs=65.1
Q ss_pred CCCccccccccccccCCceecc-CcccccHHHHHHHHhcCCCCCCCcCccCCCCCCccCHhhHHHHHHHHHhc
Q 001833 261 EPLQSFYCPITRDVMVDPVETS-SGQTFERSAIEKWFSDGNNLCPLTMTVLDTSILRPNKTLRQSIEEWKDRN 332 (1008)
Q Consensus 261 ~~~~~~~cpi~~~~m~dpv~~~-~g~t~~r~~i~~w~~~~~~~cp~~~~~l~~~~l~pN~~l~~~I~~w~~~~ 332 (1008)
+.|++|..|+...+|+|||+++ +|+|.||+.|++++-. ..+.|.+|++|++..+.||..||.-|+.|..+.
T Consensus 866 dvpdef~DPlm~Tlm~dPV~LP~Srv~vDRsti~rhlLs-~~tdPFNR~pLt~d~v~pn~eLK~kI~~~~~ek 937 (943)
T KOG2042|consen 866 DVPDEFLDPLMSTLMSDPVVLPSSRVTVDRSTIERHLLS-DCTDPFNREPLTEDMVSPNEELKAKIRCWIKEK 937 (943)
T ss_pred cCchhhhCccccccCCCCccCCcccccccHHHHHHHHhc-CCCCccccccCchhhcCCCHHHHHHHHHHHHHh
Confidence 3679999999999999999998 9999999999999965 446899999999999999999999999997554
No 98
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=97.94 E-value=4.4e-06 Score=86.23 Aligned_cols=67 Identities=24% Similarity=0.332 Sum_probs=60.8
Q ss_pred ccccccccccccCCceeccCcccccHHHHHHHHhcCCCCCCCcCccCCCCCCccCHhhHHHHHHHHHh
Q 001833 264 QSFYCPITRDVMVDPVETSSGQTFERSAIEKWFSDGNNLCPLTMTVLDTSILRPNKTLRQSIEEWKDR 331 (1008)
Q Consensus 264 ~~~~cpi~~~~m~dpv~~~~g~t~~r~~i~~w~~~~~~~cp~~~~~l~~~~l~pN~~l~~~I~~w~~~ 331 (1008)
.-++|-||.+.|+-|||++||||||--||..++.. ++.||.|.-+.....|.-|.-|-+.|+.+...
T Consensus 22 ~lLRC~IC~eyf~ip~itpCsHtfCSlCIR~~L~~-~p~CP~C~~~~~Es~Lr~n~il~Eiv~S~~~~ 88 (442)
T KOG0287|consen 22 DLLRCGICFEYFNIPMITPCSHTFCSLCIRKFLSY-KPQCPTCCVTVTESDLRNNRILDEIVKSLNFA 88 (442)
T ss_pred HHHHHhHHHHHhcCceeccccchHHHHHHHHHhcc-CCCCCceecccchhhhhhhhHHHHHHHHHHHH
Confidence 45899999999999999999999999999999954 67899999999999999999999999988543
No 99
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=97.92 E-value=0.0043 Score=69.85 Aligned_cols=279 Identities=21% Similarity=0.216 Sum_probs=183.0
Q ss_pred chHHHHHHHhcCCChHHHHHHHHHHHhhcCCcccHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHHcCChhhHHHHh
Q 001833 461 GCILLLVTMASSDDNQASRDAQELLENLSFSDDNVVQMAKANYFKHLLQRLSAGPESVKMRMATTLAEMELTDHHKASLL 540 (1008)
Q Consensus 461 g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~~~n~~~i~~~g~v~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~~~~k~~i~ 540 (1008)
..+..+..++.+.+..++..+...+..+ -..-+++.+...+.+.+..+|..++.+|+. ++
T Consensus 43 ~~~~~~~~~l~~~~~~vr~~aa~~l~~~----------~~~~av~~l~~~l~d~~~~vr~~a~~aLg~----------~~ 102 (335)
T COG1413 43 EAADELLKLLEDEDLLVRLSAAVALGEL----------GSEEAVPLLRELLSDEDPRVRDAAADALGE----------LG 102 (335)
T ss_pred hhHHHHHHHHcCCCHHHHHHHHHHHhhh----------chHHHHHHHHHHhcCCCHHHHHHHHHHHHc----------cC
Confidence 4677888888888888888888875443 345678899999999999999999998877 44
Q ss_pred hcCcHHHHHHHhc-cCCHHHHHHHHHHHHHhhCCCchhHHHHhcCChHHHHHHhcccCC---------CCcchHHHHHHH
Q 001833 541 EGNVLGPLLHLVS-RGDIQMKKVAVKALRNLSSVPQNGLQMIKEGAVGPLVDLLLHHSS---------SSSSLREETATA 610 (1008)
Q Consensus 541 ~~g~i~~Lv~lL~-~~~~~~~~~A~~aL~~L~~~~~~~~~i~~~G~v~~Ll~ll~~~~~---------~~~~~~~~a~~~ 610 (1008)
....++.|+.++. +.+..++..|..+|..+-. ..++.+++..+.+... ....++..+...
T Consensus 103 ~~~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~----------~~a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~~~ 172 (335)
T COG1413 103 DPEAVPPLVELLENDENEGVRAAAARALGKLGD----------ERALDPLLEALQDEDSGSAAAALDAALLDVRAAAAEA 172 (335)
T ss_pred ChhHHHHHHHHHHcCCcHhHHHHHHHHHHhcCc----------hhhhHHHHHHhccchhhhhhhhccchHHHHHHHHHHH
Confidence 5668899999999 5899999999999998854 2247788888876441 001234445555
Q ss_pred HHHHhccccccccCCcccccccchhHHHHHHHhhccCChHHHHHHHHHHHHhccCCChhhHHHHhhhcCChHHHHHhhcc
Q 001833 611 IMHLAVSTMYQESSQTPVTLLESDKEIFMLFSLINLTGPNVQQRILQTFNALCRSPSAGNIKTTLTQCSAIPVLVQLCEH 690 (1008)
Q Consensus 611 L~nLa~~~~~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~aL~~L~~~~~~~~~~~~i~e~~~i~~Lv~ll~~ 690 (1008)
|..+ ..+..+..+..++......++..+..+|..+.... ..+.+.+...+.+
T Consensus 173 l~~~-----------------~~~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~-----------~~~~~~l~~~~~~ 224 (335)
T COG1413 173 LGEL-----------------GDPEAIPLLIELLEDEDADVRRAAASALGQLGSEN-----------VEAADLLVKALSD 224 (335)
T ss_pred HHHc-----------------CChhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch-----------hhHHHHHHHHhcC
Confidence 5444 23556777888888888888888888888886541 1346777788888
Q ss_pred CChhHHHHHHHHHHHhccCCChhHHHhhhcccchHHHHHHhcCCCCHHHHHHHHHHHhcCCCChhhHHHHHhcCCHHHHH
Q 001833 691 DNENVRANAVKLFCCLVDDGDEAIIREHVGQKCLETLVTIIQSSHNEEEIASAMGILSKLPEVPQFTQWLLDAGALPIVL 770 (1008)
Q Consensus 691 ~~~~v~~~a~~~L~~Ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~v~~~a~~~L~nL~~~~~~~~~l~~~g~l~~Lv 770 (1008)
++..++..++..|..+- ....+..++..+.+.. ..+...+...++..- -......+.
T Consensus 225 ~~~~vr~~~~~~l~~~~------------~~~~~~~l~~~l~~~~-~~~~~~~~~~~~~~~----------~~~~~~~l~ 281 (335)
T COG1413 225 ESLEVRKAALLALGEIG------------DEEAVDALAKALEDED-VILALLAAAALGALD----------LAEAALPLL 281 (335)
T ss_pred CCHHHHHHHHHHhcccC------------cchhHHHHHHHHhccc-hHHHHHHHHHhcccC----------chhhHHHHH
Confidence 88888888888887774 1235566666666632 233333333332111 112234445
Q ss_pred HHhhCCCCCCCchhhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHHHhhcCChHHHHHHHHHHh
Q 001833 771 NFLKNGRQNDPNRFQVVENAVGALRRFTAPTNLEWQKRAAEAGVIPKLVQLLEYGTTLTKEHAATSLA 838 (1008)
Q Consensus 771 ~lL~~~~~~~~~~~~v~~~a~~aL~~L~~~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~v~~~Aa~aL~ 838 (1008)
..+.+ ....++..+..++...... .....+.....+++..++..+...+.
T Consensus 282 ~~~~~------~~~~~~~~~~~~l~~~~~~------------~~~~a~~~~~~~~~~~~~~~~~~~~~ 331 (335)
T COG1413 282 LLLID------EANAVRLEAALALGQIGQE------------KAVAALLLALEDGDADVRKAALILLE 331 (335)
T ss_pred HHhhc------chhhHHHHHHHHHHhhccc------------chHHHHHHHhcCCchhhHHHHHHHHH
Confidence 55555 4556666666666655542 22333444445555566655555443
No 100
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.91 E-value=6e-06 Score=82.19 Aligned_cols=58 Identities=24% Similarity=0.426 Sum_probs=52.7
Q ss_pred CccccccccccccCCceeccCcccccHHHHHHHHhc--CCCCCCCcCccCCCCCCccCHh
Q 001833 263 LQSFYCPITRDVMVDPVETSSGQTFERSAIEKWFSD--GNNLCPLTMTVLDTSILRPNKT 320 (1008)
Q Consensus 263 ~~~~~cpi~~~~m~dpv~~~~g~t~~r~~i~~w~~~--~~~~cp~~~~~l~~~~l~pN~~ 320 (1008)
-..|-|-||++.-+|||++.|||-||=.||.+|+.- +...||+|+-..+..+++|=|.
T Consensus 45 ~~~FdCNICLd~akdPVvTlCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~~~vvPlYG 104 (230)
T KOG0823|consen 45 GGFFDCNICLDLAKDPVVTLCGHLFCWPCLYQWLQTRPNSKECPVCKAEVSIDTVVPLYG 104 (230)
T ss_pred CCceeeeeeccccCCCEEeecccceehHHHHHHHhhcCCCeeCCccccccccceEEeeec
Confidence 368999999999999999999999999999999973 4567899999999999999873
No 101
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=97.88 E-value=0.0019 Score=72.67 Aligned_cols=193 Identities=25% Similarity=0.283 Sum_probs=146.5
Q ss_pred hHHHHHHHhhccCChHHHHHHHHHHHHhccCCChhhHHHHhhhcCChHHHHHhhccCChhHHHHHHHHHHHhccCCChhH
Q 001833 635 KEIFMLFSLINLTGPNVQQRILQTFNALCRSPSAGNIKTTLTQCSAIPVLVQLCEHDNENVRANAVKLFCCLVDDGDEAI 714 (1008)
Q Consensus 635 ~~i~~L~~ll~~~~~~v~~~al~aL~~L~~~~~~~~~~~~i~e~~~i~~Lv~ll~~~~~~v~~~a~~~L~~Ls~~~~~~~ 714 (1008)
..+..+...+.+.++.++..+...+..+.. ..+++.+..++.+.++.+|..|..+|..+-
T Consensus 43 ~~~~~~~~~l~~~~~~vr~~aa~~l~~~~~-------------~~av~~l~~~l~d~~~~vr~~a~~aLg~~~------- 102 (335)
T COG1413 43 EAADELLKLLEDEDLLVRLSAAVALGELGS-------------EEAVPLLRELLSDEDPRVRDAAADALGELG------- 102 (335)
T ss_pred hhHHHHHHHHcCCCHHHHHHHHHHHhhhch-------------HHHHHHHHHHhcCCCHHHHHHHHHHHHccC-------
Confidence 567888888888888999998888766632 236899999999999999999999888874
Q ss_pred HHhhhcccchHHHHHHhcCCCCHHHHHHHHHHHhcCCCChhhHHHHHhcCCHHHHHHHhhCCCCC------CCchhhHHH
Q 001833 715 IREHVGQKCLETLVTIIQSSHNEEEIASAMGILSKLPEVPQFTQWLLDAGALPIVLNFLKNGRQN------DPNRFQVVE 788 (1008)
Q Consensus 715 ~~~~~~~~~i~~Lv~lL~~~~~~~v~~~a~~~L~nL~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~------~~~~~~v~~ 788 (1008)
....++.|+.++..+.+..++..+..+|+.+-. ...+..++..+.+.... ......++.
T Consensus 103 -----~~~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~----------~~a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~ 167 (335)
T COG1413 103 -----DPEAVPPLVELLENDENEGVRAAAARALGKLGD----------ERALDPLLEALQDEDSGSAAAALDAALLDVRA 167 (335)
T ss_pred -----ChhHHHHHHHHHHcCCcHhHHHHHHHHHHhcCc----------hhhhHHHHHHhccchhhhhhhhccchHHHHHH
Confidence 235788999999976777899999999998873 33477788888773200 001113555
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHcCChHHHHHHhhcCChHHHHHHHHHHhhhhhcCCCCCCCCCCCCcccccCCCCCCcc
Q 001833 789 NAVGALRRFTAPTNLEWQKRAAEAGVIPKLVQLLEYGTTLTKEHAATSLARFSKNSLGLSRPIPKRKGFWCFSPPPEIGC 868 (1008)
Q Consensus 789 ~a~~aL~~L~~~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~v~~~Aa~aL~nLs~~~~~l~~~~~~~~g~~~~~~~~~~~c 868 (1008)
.+..+|..+-. ...++.+...+.+.+..+|..|+.+|+.+....
T Consensus 168 ~a~~~l~~~~~------------~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~------------------------ 211 (335)
T COG1413 168 AAAEALGELGD------------PEAIPLLIELLEDEDADVRRAAASALGQLGSEN------------------------ 211 (335)
T ss_pred HHHHHHHHcCC------------hhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch------------------------
Confidence 56655555443 346788999999999999999999999987321
Q ss_pred cccCcccCcccchhHhhccchHHHHHhhcCCChhhhHHHHHHHHhhh
Q 001833 869 QVHGGLCGIESSFCLLEANAVRPLVRVLEDPDHGACEASLDALVTLI 915 (1008)
Q Consensus 869 ~vh~~~c~~~~~~~l~~~g~i~~Lv~lL~~~d~~v~~~al~aL~~L~ 915 (1008)
..+...+...+.+.+..++..++.+|..+-
T Consensus 212 -----------------~~~~~~l~~~~~~~~~~vr~~~~~~l~~~~ 241 (335)
T COG1413 212 -----------------VEAADLLVKALSDESLEVRKAALLALGEIG 241 (335)
T ss_pred -----------------hhHHHHHHHHhcCCCHHHHHHHHHHhcccC
Confidence 125677888899999999999998888876
No 102
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=97.86 E-value=0.0086 Score=72.38 Aligned_cols=496 Identities=16% Similarity=0.130 Sum_probs=262.4
Q ss_pred CchHHHHHHHcCCCHHHHHHHHHHHHHhccCChhhHHHhhccCCcHHHHHHHhcc--ChhHHHHHHHHHHHhccCchhhH
Q 001833 377 NYIPKLIYLLGSKNRDVRNRALIILHILVKDSNDTKERLANGDDAVESIVRSLGR--RIEERKLAVALLLELSTCNTLRD 454 (1008)
Q Consensus 377 g~i~~L~~lL~s~~~~~~~~Al~~L~~Ls~~~~~~k~~i~~~~g~i~~Lv~~L~~--~~~~~~~A~~~L~~Ls~~~~~~~ 454 (1008)
+++..|++.|+..+..+|-.|++.+..++...| ..+++ .++..++.+++- +..+-..|+-.|.+|+.---...
T Consensus 341 ~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp---~~Lad--~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLlp 415 (1133)
T KOG1943|consen 341 FVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLP---PELAD--QVIGSVIDLFNPAEDDSAWHGACLALAELALRGLLLP 415 (1133)
T ss_pred HHHHHHHHhccCCcchhhHHHHHHHHHHHccCc---HHHHH--HHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcch
Confidence 467778888888899999999999999988775 33443 577778886654 34566778888888876221111
Q ss_pred HhhcccchHHHHHHHhcC--------CChHHHHHHHHHHHhhcC-Cccc-HHHHHhcCcHHHHHHHHhcCCHHHHHHHHH
Q 001833 455 QIGDVQGCILLLVTMASS--------DDNQASRDAQELLENLSF-SDDN-VVQMAKANYFKHLLQRLSAGPESVKMRMAT 524 (1008)
Q Consensus 455 ~i~~~~g~i~~Lv~lL~~--------~~~~~~~~a~~aL~~Ls~-~~~n-~~~i~~~g~v~~Lv~~L~~~~~~~~~~aa~ 524 (1008)
.. ...++|.++.-+.- ....++..|+-+.+.++. +..+ ...+...=.-..|+..+=+.....|..|.+
T Consensus 416 s~--l~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDrevncRRAAsA 493 (1133)
T KOG1943|consen 416 SL--LEDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDREVNCRRAASA 493 (1133)
T ss_pred HH--HHHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCchhhHhHHHHH
Confidence 11 12455666655542 234678888888887753 2222 121211111112223344455667888888
Q ss_pred HHHHHcCChhhHHHHhhcCcHHHHHHHhccCC---HHHHHHHHHHHHH-hhCCCchhHHHHhcCChHHHHHHhcc-cCCC
Q 001833 525 TLAEMELTDHHKASLLEGNVLGPLLHLVSRGD---IQMKKVAVKALRN-LSSVPQNGLQMIKEGAVGPLVDLLLH-HSSS 599 (1008)
Q Consensus 525 ~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~---~~~~~~A~~aL~~-L~~~~~~~~~i~~~G~v~~Ll~ll~~-~~~~ 599 (1008)
++... +|..|-+|.=++++...+ ...+.++-..|.. ++..+..+..+++ .++.. -...
T Consensus 494 AlqE~---------VGR~~n~p~Gi~Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~--------~L~t~Kv~HW 556 (1133)
T KOG1943|consen 494 ALQEN---------VGRQGNFPHGISLISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPVFN--------HLLTKKVCHW 556 (1133)
T ss_pred HHHHH---------hccCCCCCCchhhhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHHHH--------HHHhcccccc
Confidence 88774 556666655555555443 2233333222221 1223333333322 12221 1223
Q ss_pred CcchHHHHHHHHHHHhccccccccCCcccccccchhHHHHHHHhhccCChHHHHHHHHHHHHhccC----C-Chh-hHHH
Q 001833 600 SSSLREETATAIMHLAVSTMYQESSQTPVTLLESDKEIFMLFSLINLTGPNVQQRILQTFNALCRS----P-SAG-NIKT 673 (1008)
Q Consensus 600 ~~~~~~~a~~~L~nLa~~~~~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~aL~~L~~~----~-~~~-~~~~ 673 (1008)
+..+++.++++|.+|+..... ......+++++....+.+...+..+..+...+... . -.. ...+
T Consensus 557 d~~irelaa~aL~~Ls~~~pk----------~~a~~~L~~lld~~ls~~~~~r~g~~la~~ev~~~~~~l~~~~~~l~e~ 626 (1133)
T KOG1943|consen 557 DVKIRELAAYALHKLSLTEPK----------YLADYVLPPLLDSTLSKDASMRHGVFLAAGEVIGALRKLEPVIKGLDEN 626 (1133)
T ss_pred cHHHHHHHHHHHHHHHHhhHH----------hhcccchhhhhhhhcCCChHHhhhhHHHHHHHHHHhhhhhhhhhhhHHH
Confidence 478999999999999864321 11245567777777778877776544444433321 0 000 1111
Q ss_pred Hhhhc-CChHHHHH-hhccC-ChhHHHHHHHHHHHhccCCChhHHHhhhcccchHHHHHHhcCCCCHHHHHHHHHHHhcC
Q 001833 674 TLTQC-SAIPVLVQ-LCEHD-NENVRANAVKLFCCLVDDGDEAIIREHVGQKCLETLVTIIQSSHNEEEIASAMGILSKL 750 (1008)
Q Consensus 674 ~i~e~-~~i~~Lv~-ll~~~-~~~v~~~a~~~L~~Ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~v~~~a~~~L~nL 750 (1008)
.+..- ..++.+.. -...+ ..-.+...+..+..++ ..........+..+.-..+.+.+.. ++ .++..|..+++.+
T Consensus 627 ~i~~l~~ii~~~~~~~~~rg~~~lmr~~~~~~Ie~~s-~s~~~~~~~~v~e~~~~ll~~~l~~-~n-~i~~~av~av~~l 703 (1133)
T KOG1943|consen 627 RIAGLLSIIPPICDRYFYRGQGTLMRQATLKFIEQLS-LSKDRLFQDFVIENWQMLLAQNLTL-PN-QIRDAAVSAVSDL 703 (1133)
T ss_pred HhhhhhhhccHHHHHHhccchHHHHHHHHHHHHHHhh-hccchhHHHHHHHHHHHHHHHhhcc-hH-HHHHHHHHHHHHH
Confidence 11110 01222222 12222 2345666777888887 4444444444444455555555533 23 5777888888887
Q ss_pred CC-----ChhhHHHHHhcCCHHHHHHHhhCCCCCCCchhhHHHHHHHHHHHhcCCC-CHHHHHHHHHcCChHHHHHHhhc
Q 001833 751 PE-----VPQFTQWLLDAGALPIVLNFLKNGRQNDPNRFQVVENAVGALRRFTAPT-NLEWQKRAAEAGVIPKLVQLLEY 824 (1008)
Q Consensus 751 ~~-----~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~v~~~a~~aL~~L~~~~-~~~~~~~l~~~g~l~~Lv~lL~~ 824 (1008)
+. ++.... ..+...+..+.++ .+..++.....++.++.... +-.+++.+ ...+......
T Consensus 704 ~s~y~~~d~~~~~-----~li~~~ls~~~~~-----~~~~~r~g~~lal~~lp~~~i~~~~q~~l-----c~~~l~~~p~ 768 (1133)
T KOG1943|consen 704 VSTYVKADEGEEA-----PLITRYLSRLTKC-----SEERIRRGLILALGVLPSELIHRHLQEKL-----CKLVLELLPS 768 (1133)
T ss_pred HHHHHhcCchhhh-----HHHHHHHHHhcCc-----hHHHHHHHHHHHHccCcHHhhchHHHHHH-----HHHHhccCcc
Confidence 65 221111 1233344444442 24556666666666555210 12233333 2223333333
Q ss_pred C-ChHHHHHHHHHHhhhhhcCCCCCCCCCCCCcccccCCCCCCcccccCcccCcccchhHhhccchHHHHHhhcC-----
Q 001833 825 G-TTLTKEHAATSLARFSKNSLGLSRPIPKRKGFWCFSPPPEIGCQVHGGLCGIESSFCLLEANAVRPLVRVLED----- 898 (1008)
Q Consensus 825 ~-~~~v~~~Aa~aL~nLs~~~~~l~~~~~~~~g~~~~~~~~~~~c~vh~~~c~~~~~~~l~~~g~i~~Lv~lL~~----- 898 (1008)
+ .++.|.....++.+........ .+.-.-..+...|++.|++
T Consensus 769 d~~a~aR~~~V~al~~v~~~~~~~--------------------------------~~~~~~~k~~e~LL~~lddYttd~ 816 (1133)
T KOG1943|consen 769 DAWAEARQQNVKALAHVCKTVTSL--------------------------------LFSESIEKFRETLLNALDDYTTDS 816 (1133)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHh--------------------------------hccccHHHHHHHHHHHHhhccccc
Confidence 3 5677888888887776322100 0000112346667777764
Q ss_pred -CChh--hhHHHHHHHHhhh-cccccchhhHHHHhcCchHHHHH-HhcC---CChHHHHHHHHHHHHHhcC
Q 001833 899 -PDHG--ACEASLDALVTLI-EGERLQNGSKVLEDANAIDRMVR-FLSS---PSPKLQEKALDSVERIFRL 961 (1008)
Q Consensus 899 -~d~~--v~~~al~aL~~L~-~~~~~~~~~~~i~~~~~i~~l~~-ll~~---~~~~l~~~a~~~L~~l~~~ 961 (1008)
+|.+ ||++|+.++..+. .... ..+.+++.+..+.. ++.. +-..+++.|..++..+..+
T Consensus 817 rGDVGswVReaAm~al~~~~~~l~~-----p~~ld~~~i~~~~~~~vqQ~veKIdrlre~a~~~~~qi~~~ 882 (1133)
T KOG1943|consen 817 RGDVGSWVREAAMKALSSLLDTLSS-----PKLLDEDSINRIIRYFVQQAVEKIDRLRELAASALNQIVVH 882 (1133)
T ss_pred CccHHHHHHHHHHHHHHhhhhhhcC-----cccccHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhceeec
Confidence 3333 9999999999998 2211 22334444444444 3332 3345677888888777555
No 103
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.84 E-value=0.0032 Score=70.69 Aligned_cols=355 Identities=15% Similarity=0.171 Sum_probs=213.3
Q ss_pred hcCcHHHHHHHhccCCHHHHHHHHHHHHHhhCCCchhHHHHhcCChHHHHHHhcccCCCCcchHHHHHHHHHHHhccccc
Q 001833 541 EGNVLGPLLHLVSRGDIQMKKVAVKALRNLSSVPQNGLQMIKEGAVGPLVDLLLHHSSSSSSLREETATAIMHLAVSTMY 620 (1008)
Q Consensus 541 ~~g~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~~~~~~~i~~~G~v~~Ll~ll~~~~~~~~~~~~~a~~~L~nLa~~~~~ 620 (1008)
-.+.+++.+..+.+.+..++..|+..|.|++.-........-.-+...+.++..+.. ...+.++..|-.+..+-..
T Consensus 82 ~~~iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv~k~~v~~~Fn~iFdvL~klsaDsd----~~V~~~aeLLdRLikdIVt 157 (675)
T KOG0212|consen 82 LEKIVPPVLNCFSDQDSQVRYYACESLYNIAKVAKGEVLVYFNEIFDVLCKLSADSD----QNVRGGAELLDRLIKDIVT 157 (675)
T ss_pred HHHhhHHHHHhccCccceeeeHhHHHHHHHHHHhccCcccchHHHHHHHHHHhcCCc----cccccHHHHHHHHHHHhcc
Confidence 367899999999999999999999999999853222222222234455555555433 2355566666666543221
Q ss_pred cccCCcccccccchhHHHHHHHhhccCChHHHHHHHHHHHHhccCCChhhHHHHhhhcCChHHHHHhhccCChhHHHHHH
Q 001833 621 QESSQTPVTLLESDKEIFMLFSLINLTGPNVQQRILQTFNALCRSPSAGNIKTTLTQCSAIPVLVQLCEHDNENVRANAV 700 (1008)
Q Consensus 621 ~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~aL~~L~~~~~~~~~~~~i~e~~~i~~Lv~ll~~~~~~v~~~a~ 700 (1008)
... ..+.=++.++.+-.-+...+|.+|...+..+.-|-..|+-+-+ .-+ ...++.|..+|.++++++|.-+-
T Consensus 158 e~~-----~tFsL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P~~~m~-~yl--~~~ldGLf~~LsD~s~eVr~~~~ 229 (675)
T KOG0212|consen 158 ESA-----STFSLPEFIPLLRERIYVINPMTRQFLVSWLYVLDSVPDLEMI-SYL--PSLLDGLFNMLSDSSDEVRTLTD 229 (675)
T ss_pred ccc-----cccCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCcHHHH-hcc--hHHHHHHHHHhcCCcHHHHHHHH
Confidence 111 1232334455555555567899999999999988765543221 111 23567788899999999997666
Q ss_pred HHHHHhcc--CCChhHHHhhhcccchHHHHHHhcCCCCHHHHHHHHHHHhcCCCChhhHHHHHhcCCHHHHHHHhhCCCC
Q 001833 701 KLFCCLVD--DGDEAIIREHVGQKCLETLVTIIQSSHNEEEIASAMGILSKLPEVPQFTQWLLDAGALPIVLNFLKNGRQ 778 (1008)
Q Consensus 701 ~~L~~Ls~--~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~v~~~a~~~L~nL~~~~~~~~~l~~~g~l~~Lv~lL~~~~~ 778 (1008)
.++..+-. ..++... --...++.++.-+.+ +++.++.-|+..|.....-+.......-.|++..++.++.+..
T Consensus 230 t~l~~fL~eI~s~P~s~---d~~~~i~vlv~~l~s-s~~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~s~~e- 304 (675)
T KOG0212|consen 230 TLLSEFLAEIRSSPSSM---DYDDMINVLVPHLQS-SEPEIQLKALTWIQEFVKIPGRDLLLYLSGILTAILPCLSDTE- 304 (675)
T ss_pred HHHHHHHHHHhcCcccc---CcccchhhccccccC-CcHHHHHHHHHHHHHHhcCCCcchhhhhhhhhhhcccCCCCCc-
Confidence 65554421 0111111 112456777777777 5678888888777776662222333444666666677766621
Q ss_pred CCCchhhHHHHHHHH---HHHhcCCCCHHHHHHHHHcCChHHHHHHhhcCChHHHHHHHHHHhhhhhcCCCCCCCCCCCC
Q 001833 779 NDPNRFQVVENAVGA---LRRFTAPTNLEWQKRAAEAGVIPKLVQLLEYGTTLTKEHAATSLARFSKNSLGLSRPIPKRK 855 (1008)
Q Consensus 779 ~~~~~~~v~~~a~~a---L~~L~~~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~v~~~Aa~aL~nLs~~~~~l~~~~~~~~ 855 (1008)
...+++.+... +..+.. .+...+.+.--.++.++...+.+...++|..+..=+..+-.+.++
T Consensus 305 ----~~~i~~~a~~~n~~l~~l~s--~~~~~~~id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p~--------- 369 (675)
T KOG0212|consen 305 ----EMSIKEYAQMVNGLLLKLVS--SERLKEEIDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKAPG--------- 369 (675)
T ss_pred ----cccHHHHHHHHHHHHHHHHh--hhhhccccchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCcc---------
Confidence 11334333322 333333 233322333334678888999899999999998888877643332
Q ss_pred cccccCCCCCCcccccCcccCcccchhHhhccchHHHHHhhcCCChhhhHHHHHHHHhhh-cccccchhhHHHHhcCchH
Q 001833 856 GFWCFSPPPEIGCQVHGGLCGIESSFCLLEANAVRPLVRVLEDPDHGACEASLDALVTLI-EGERLQNGSKVLEDANAID 934 (1008)
Q Consensus 856 g~~~~~~~~~~~c~vh~~~c~~~~~~~l~~~g~i~~Lv~lL~~~d~~v~~~al~aL~~L~-~~~~~~~~~~~i~~~~~i~ 934 (1008)
+.+ .........|+.-|.+.+..|...++..|.++. +...+ ..+ ..+.
T Consensus 370 -----------------------ql~-~h~~~if~tLL~tLsd~sd~vvl~~L~lla~i~~s~~~~-~~~------~fl~ 418 (675)
T KOG0212|consen 370 -----------------------QLL-VHNDSIFLTLLKTLSDRSDEVVLLALSLLASICSSSNSP-NLR------KFLL 418 (675)
T ss_pred -----------------------hhh-hhccHHHHHHHHhhcCchhHHHHHHHHHHHHHhcCcccc-cHH------HHHH
Confidence 001 112345677888999999999999999999999 44322 111 1233
Q ss_pred HHHHHhcCCChHHHHHHHHHHHHH
Q 001833 935 RMVRFLSSPSPKLQEKALDSVERI 958 (1008)
Q Consensus 935 ~l~~ll~~~~~~l~~~a~~~L~~l 958 (1008)
.+.++....+.-+..++.-++.++
T Consensus 419 sLL~~f~e~~~~l~~Rg~lIIRql 442 (675)
T KOG0212|consen 419 SLLEMFKEDTKLLEVRGNLIIRQL 442 (675)
T ss_pred HHHHHHhhhhHHHHhhhhHHHHHH
Confidence 344444555556666777666665
No 104
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=97.83 E-value=0.00099 Score=72.50 Aligned_cols=268 Identities=15% Similarity=0.167 Sum_probs=179.9
Q ss_pred HhhccCCcHHHHHHHhccC-h--hHHHHHHHHHHHhccCchhhHHhhcccchHHHHHHHhc-CCChHHHHHHHHHHHhhc
Q 001833 414 RLANGDDAVESIVRSLGRR-I--EERKLAVALLLELSTCNTLRDQIGDVQGCILLLVTMAS-SDDNQASRDAQELLENLS 489 (1008)
Q Consensus 414 ~i~~~~g~i~~Lv~~L~~~-~--~~~~~A~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~-~~~~~~~~~a~~aL~~Ls 489 (1008)
.|.. .|+++.|++++... . .++.+|+.+|-... ..++++.+.+ -| ...++.+.+ ...++.....+..|.++-
T Consensus 175 ~iR~-~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~-~aeN~d~va~-~~-~~~Il~lAK~~e~~e~aR~~~~il~~mF 250 (832)
T KOG3678|consen 175 AIRL-DGGLDLLLRMFQAPNLETSVRVEAARLLEQIL-VAENRDRVAR-IG-LGVILNLAKEREPVELARSVAGILEHMF 250 (832)
T ss_pred Hhhc-cchHHHHHHHHhCCchhHHHHHHHHHHHHHHH-hhhhhhHHhh-cc-chhhhhhhhhcCcHHHHHHHHHHHHHHh
Confidence 3444 79999999999764 3 34777777777653 2344555554 22 333444444 456778888899999998
Q ss_pred CC-cccHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHHcCC--hhhHHHHhhcCcHHHHHHHhccCCHHHHHHHHHH
Q 001833 490 FS-DDNVVQMAKANYFKHLLQRLSAGPESVKMRMATTLAEMELT--DHHKASLLEGNVLGPLLHLVSRGDIQMKKVAVKA 566 (1008)
Q Consensus 490 ~~-~~n~~~i~~~g~v~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~--~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~a 566 (1008)
.+ ++.+..++.+|+++.++-..+..++.+...++-+|+|.+.. ...+..+++..+-+.|.-+-.+.+.-.+.+|+-+
T Consensus 251 KHSeet~~~Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~skDel~R~~AClA 330 (832)
T KOG3678|consen 251 KHSEETCQRLVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSKDELLRLHACLA 330 (832)
T ss_pred hhhHHHHHHHHhhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcchHHHHHHHHHHH
Confidence 64 55688999999999999888888899999999999998654 4778889888888899888888888999999999
Q ss_pred HHHhhCCCchhHHHHhcCChHHHHHHhcccCCCCcchHHHHHHHHHHHhccccccccCCcccccccchhHHHHHHHhhcc
Q 001833 567 LRNLSSVPQNGLQMIKEGAVGPLVDLLLHHSSSSSSLREETATAIMHLAVSTMYQESSQTPVTLLESDKEIFMLFSLINL 646 (1008)
Q Consensus 567 L~~L~~~~~~~~~i~~~G~v~~Ll~ll~~~~~~~~~~~~~a~~~L~nLa~~~~~~~~~~~~~~~l~~~~~i~~L~~ll~~ 646 (1008)
...|+.+.+.-..+-+.|-+...-.++.+.... .....+ +++. .=...+.+..|+.+|++
T Consensus 331 V~vlat~KE~E~~VrkS~TlaLVEPlva~~DP~--~FARD~----------hd~a--------QG~~~d~LqRLvPlLdS 390 (832)
T KOG3678|consen 331 VAVLATNKEVEREVRKSGTLALVEPLVASLDPG--RFARDA----------HDYA--------QGRGPDDLQRLVPLLDS 390 (832)
T ss_pred HhhhhhhhhhhHHHhhccchhhhhhhhhccCcc--hhhhhh----------hhhh--------ccCChHHHHHhhhhhhc
Confidence 999998777777777777644433344433211 111111 1111 11235678888999886
Q ss_pred CChHHHHHHHHHHHHhcc--CCChhhHHHHhhhcCChHHHHHhhccCChhHHHHHHHHHHHhc
Q 001833 647 TGPNVQQRILQTFNALCR--SPSAGNIKTTLTQCSAIPVLVQLCEHDNENVRANAVKLFCCLV 707 (1008)
Q Consensus 647 ~~~~v~~~al~aL~~L~~--~~~~~~~~~~i~e~~~i~~Lv~ll~~~~~~v~~~a~~~L~~Ls 707 (1008)
..-+.|.- .+++-.+. -.....-.+.+.+-|++..|-++..+++.-.-..|-.+|..+-
T Consensus 391 ~R~EAq~i--~AF~l~~EAaIKs~Q~K~kVFseIGAIQaLKevaSS~d~vaakfAseALtviG 451 (832)
T KOG3678|consen 391 NRLEAQCI--GAFYLCAEAAIKSLQGKTKVFSEIGAIQALKEVASSPDEVAAKFASEALTVIG 451 (832)
T ss_pred chhhhhhh--HHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHhc
Confidence 55555443 33332221 0001111245667788999999998777665566666776664
No 105
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=97.80 E-value=0.0077 Score=67.66 Aligned_cols=253 Identities=16% Similarity=0.107 Sum_probs=168.5
Q ss_pred HhccCChhhHHHhhccCCcHHHHHH-HhccChhHHHHHHHHHHHhccCchhhHHhhcccchHHHHHHHhc--CCChHHHH
Q 001833 403 ILVKDSNDTKERLANGDDAVESIVR-SLGRRIEERKLAVALLLELSTCNTLRDQIGDVQGCILLLVTMAS--SDDNQASR 479 (1008)
Q Consensus 403 ~Ls~~~~~~k~~i~~~~g~i~~Lv~-~L~~~~~~~~~A~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~--~~~~~~~~ 479 (1008)
.|-+.++.-|..+.- ....+.+.. +|..+.+.+..+..+++.+..+.+.-..+.+. +.--.++.-|. ..+..-++
T Consensus 9 ~l~~~~p~l~~~~~~-~~~~~~i~~~lL~~~~~vraa~yRilRy~i~d~~~l~~~~~l-~id~~ii~SL~~~~~~~~ER~ 86 (371)
T PF14664_consen 9 DLLKRHPTLKYDLVL-SFFGERIQCMLLSDSKEVRAAGYRILRYLISDEESLQILLKL-HIDIFIIRSLDRDNKNDVERE 86 (371)
T ss_pred HHHHhCchhhhhhhH-HHHHHHHHHHHCCCcHHHHHHHHHHHHHHHcCHHHHHHHHHc-CCchhhHhhhcccCCChHHHH
Confidence 333444444544443 344445554 44556677888888999998888776666652 33223333343 23556778
Q ss_pred HHHHHHHhhcCCcccHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHHcCChhhHHHHhhcCcHHHHHHHhccCCHHH
Q 001833 480 DAQELLENLSFSDDNVVQMAKANYFKHLLQRLSAGPESVKMRMATTLAEMELTDHHKASLLEGNVLGPLLHLVSRGDIQM 559 (1008)
Q Consensus 480 ~a~~aL~~Ls~~~~n~~~i~~~g~v~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~ 559 (1008)
.|++.+..+...++... -...|++..++.+..+.++..+..|..+|+.++..+.. .+...|++..|++.+.++....
T Consensus 87 QALkliR~~l~~~~~~~-~~~~~vvralvaiae~~~D~lr~~cletL~El~l~~P~--lv~~~gG~~~L~~~l~d~~~~~ 163 (371)
T PF14664_consen 87 QALKLIRAFLEIKKGPK-EIPRGVVRALVAIAEHEDDRLRRICLETLCELALLNPE--LVAECGGIRVLLRALIDGSFSI 163 (371)
T ss_pred HHHHHHHHHHHhcCCcc-cCCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCHH--HHHHcCCHHHHHHHHHhccHhH
Confidence 89888888765433222 23668888999999888899999999999999876543 2557899999999998887778
Q ss_pred HHHHHHHHHHhhCCCchhHHHHhcCChHHHHHHhccc----CCCCc--chHHHHHHHHHHHhccccccccCCcccccccc
Q 001833 560 KKVAVKALRNLSSVPQNGLQMIKEGAVGPLVDLLLHH----SSSSS--SLREETATAIMHLAVSTMYQESSQTPVTLLES 633 (1008)
Q Consensus 560 ~~~A~~aL~~L~~~~~~~~~i~~~G~v~~Ll~ll~~~----~~~~~--~~~~~a~~~L~nLa~~~~~~~~~~~~~~~l~~ 633 (1008)
.+..+.++..+-.+|..|..+...--+..++.-+.+. ..... +....+..++..+-.+=.+-- .+-..
T Consensus 164 ~~~l~~~lL~lLd~p~tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl------~l~~~ 237 (371)
T PF14664_consen 164 SESLLDTLLYLLDSPRTRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLL------YLSMN 237 (371)
T ss_pred HHHHHHHHHHHhCCcchhhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCcee------eeecC
Confidence 8899999999999998887765433455555555443 11112 233445555555543222111 11112
Q ss_pred h-hHHHHHHHhhccCChHHHHHHHHHHHHhccCC
Q 001833 634 D-KEIFMLFSLINLTGPNVQQRILQTFNALCRSP 666 (1008)
Q Consensus 634 ~-~~i~~L~~ll~~~~~~v~~~al~aL~~L~~~~ 666 (1008)
. .++..++..+..++++++..++..|..+-+-+
T Consensus 238 ~~~~lksLv~~L~~p~~~ir~~Ildll~dllrik 271 (371)
T PF14664_consen 238 DFRGLKSLVDSLRLPNPEIRKAILDLLFDLLRIK 271 (371)
T ss_pred CchHHHHHHHHHcCCCHHHHHHHHHHHHHHHCCC
Confidence 2 68999999999999999999999999988743
No 106
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=97.80 E-value=0.02 Score=64.43 Aligned_cols=454 Identities=14% Similarity=0.124 Sum_probs=225.0
Q ss_pred hHHHHHHHhcCCChHHHHHHHHHHHhhcCCcccHHHHHhcCcHHHHHHHHhcCCH-HHHHHHHHHHHHHcCChhhHHHHh
Q 001833 462 CILLLVTMASSDDNQASRDAQELLENLSFSDDNVVQMAKANYFKHLLQRLSAGPE-SVKMRMATTLAEMELTDHHKASLL 540 (1008)
Q Consensus 462 ~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~~~n~~~i~~~g~v~~Lv~~L~~~~~-~~~~~aa~~L~~Ls~~~~~k~~i~ 540 (1008)
..-.+.++.++.|+..+...-.++..|+.-.+.... +...+++-+..|.+ .++-.|.+.|..+ .
T Consensus 66 lff~i~KlFQhkd~~Lrq~VY~aIkelS~~tedvlm-----~tssiMkD~~~g~~~~~kp~AiRsL~~V----------i 130 (898)
T COG5240 66 LFFAILKLFQHKDLYLRQCVYSAIKELSKLTEDVLM-----GTSSIMKDLNGGVPDDVKPMAIRSLFSV----------I 130 (898)
T ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHHhhcchhhhH-----HHHHHHHhhccCCccccccHHHHHHHHh----------c
Confidence 444566777788888888888888888754332111 23345566666655 6778888888774 2
Q ss_pred hcCcHHHHHHHhc----cCCHHHHHHHHHHHHHhhCCCchhHHHHhcCChHHHHHHhccc---------CCCCcchHHHH
Q 001833 541 EGNVLGPLLHLVS----RGDIQMKKVAVKALRNLSSVPQNGLQMIKEGAVGPLVDLLLHH---------SSSSSSLREET 607 (1008)
Q Consensus 541 ~~g~i~~Lv~lL~----~~~~~~~~~A~~aL~~L~~~~~~~~~i~~~G~v~~Ll~ll~~~---------~~~~~~~~~~a 607 (1008)
+...++.+=++|. +..+..+..|+-.-.+|-....+..+-.....-.+.+.+-+.+ +...+-.+.+|
T Consensus 131 d~~tv~~~er~l~~a~Vs~~~a~~saalv~aYhLlp~~~~~~~rw~ne~qeav~~l~q~p~~~~n~gy~Pn~~~isqYHa 210 (898)
T COG5240 131 DGETVYDFERYLNQAFVSTSMARRSAALVVAYHLLPNNFNQTKRWLNETQEAVLDLKQFPNQHGNEGYEPNGNPISQYHA 210 (898)
T ss_pred CcchhhhHHHHhhhhccccchhhhhhHHHHhhhhccccHHHHHHHHHHHHHHHhhHhhCcCccCCcccCCCCChHHHHHH
Confidence 3333344333333 3345555555555555544333321111111122222222211 11235678888
Q ss_pred HHHHHHHhccccccccCCcccccccchhHHHHHHHhhccCC----hHHHHHHHHHHHHhccCCChhhHHHHhhhcCChHH
Q 001833 608 ATAIMHLAVSTMYQESSQTPVTLLESDKEIFMLFSLINLTG----PNVQQRILQTFNALCRSPSAGNIKTTLTQCSAIPV 683 (1008)
Q Consensus 608 ~~~L~nLa~~~~~~~~~~~~~~~l~~~~~i~~L~~ll~~~~----~~v~~~al~aL~~L~~~~~~~~~~~~i~e~~~i~~ 683 (1008)
++.|+.+-..+. -+.-.++..+.... .......+++...+... +...+. ...|-
T Consensus 211 lGlLyq~kr~dk---------------ma~lklv~hf~~n~smknq~a~V~lvr~~~~ll~~--n~q~~~-----q~rpf 268 (898)
T COG5240 211 LGLLYQSKRTDK---------------MAQLKLVEHFRGNASMKNQLAGVLLVRATVELLKE--NSQALL-----QLRPF 268 (898)
T ss_pred HHHHHHHhcccH---------------HHHHHHHHHhhcccccccchhheehHHHHHHHHHh--ChHHHH-----HHHHH
Confidence 888888754221 12223333333221 11112233444444332 222221 12455
Q ss_pred HHHhhccCChhHHHHHHHHHHHhccCC-ChhHHHhhhcccchHHHHHHhcCCCCHHHHHHHHHHHhcCCC-ChhhHHHHH
Q 001833 684 LVQLCEHDNENVRANAVKLFCCLVDDG-DEAIIREHVGQKCLETLVTIIQSSHNEEEIASAMGILSKLPE-VPQFTQWLL 761 (1008)
Q Consensus 684 Lv~ll~~~~~~v~~~a~~~L~~Ls~~~-~~~~~~~~~~~~~i~~Lv~lL~~~~~~~v~~~a~~~L~nL~~-~~~~~~~l~ 761 (1008)
|-.++.+.-+.+...+++++..++... .++.. ...+..|-.+|.++ ....+-.|+++|..|+. .|+...
T Consensus 269 L~~wls~k~emV~lE~Ar~v~~~~~~nv~~~~~-----~~~vs~L~~fL~s~-rv~~rFsA~Riln~lam~~P~kv~--- 339 (898)
T COG5240 269 LNSWLSDKFEMVFLEAARAVCALSEENVGSQFV-----DQTVSSLRTFLKST-RVVLRFSAMRILNQLAMKYPQKVS--- 339 (898)
T ss_pred HHHHhcCcchhhhHHHHHHHHHHHHhccCHHHH-----HHHHHHHHHHHhcc-hHHHHHHHHHHHHHHHhhCCceee---
Confidence 666677777889999999988887322 12111 13455666667663 44677889999999986 443211
Q ss_pred hcCCHHHHHHHhhCCCCCCCchhhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHHHhhcCChHHHHHHHHHHhhhh
Q 001833 762 DAGALPIVLNFLKNGRQNDPNRFQVVENAVGALRRFTAPTNLEWQKRAAEAGVIPKLVQLLEYGTTLTKEHAATSLARFS 841 (1008)
Q Consensus 762 ~~g~l~~Lv~lL~~~~~~~~~~~~v~~~a~~aL~~L~~~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~v~~~Aa~aL~nLs 841 (1008)
-+-+-+-.++.+ .+..+--.|+-.|..-. +++....+ +..+...+++-+.+-+.-+..++..|+
T Consensus 340 --vcN~evEsLIsd------~Nr~IstyAITtLLKTG---t~e~idrL-----v~~I~sfvhD~SD~FKiI~ida~rsLs 403 (898)
T COG5240 340 --VCNKEVESLISD------ENRTISTYAITTLLKTG---TEETIDRL-----VNLIPSFVHDMSDGFKIIAIDALRSLS 403 (898)
T ss_pred --ecChhHHHHhhc------ccccchHHHHHHHHHcC---chhhHHHH-----HHHHHHHHHhhccCceEEeHHHHHHHH
Confidence 011333344444 23233333333333322 34433333 233344444444445555555555555
Q ss_pred hcCCCCCCCCCCCCcccccC---CCCCCcccccCcccCcccchhHhhccchHHHHHhhcCCChhhhHHHHHHHHhhh-cc
Q 001833 842 KNSLGLSRPIPKRKGFWCFS---PPPEIGCQVHGGLCGIESSFCLLEANAVRPLVRVLEDPDHGACEASLDALVTLI-EG 917 (1008)
Q Consensus 842 ~~~~~l~~~~~~~~g~~~~~---~~~~~~c~vh~~~c~~~~~~~l~~~g~i~~Lv~lL~~~d~~v~~~al~aL~~L~-~~ 917 (1008)
..-+. +.....-|. -.+.++ + =.+..+|..+.++++ .+|+.++.|+..||.++ |.
T Consensus 404 l~Fp~------k~~s~l~FL~~~L~~eGg-------------~-eFK~~~Vdaisd~~~-~~p~skEraLe~LC~fIEDc 462 (898)
T COG5240 404 LLFPS------KKLSYLDFLGSSLLQEGG-------------L-EFKKYMVDAISDAME-NDPDSKERALEVLCTFIEDC 462 (898)
T ss_pred hhCcH------HHHHHHHHHHHHHHhccc-------------c-hHHHHHHHHHHHHHh-hCchHHHHHHHHHHHHHhhc
Confidence 32211 000000000 000000 0 011123445555554 36677888888888888 54
Q ss_pred cccchhhHHH---HhcC--------chHHHHHHhcCCChHHHHHHHHHHHHHhcChHHHHHhcccc-CchhhhhcccCCc
Q 001833 918 ERLQNGSKVL---EDAN--------AIDRMVRFLSSPSPKLQEKALDSVERIFRLPEFKQKYGKSA-QMPLVDLTQRGNS 985 (1008)
Q Consensus 918 ~~~~~~~~~i---~~~~--------~i~~l~~ll~~~~~~l~~~a~~~L~~l~~~~~~~~~~~~~~-~~~Lv~l~~~~~~ 985 (1008)
+..+-....+ -++| .+..|.+-+--.|.-+|..|+.+|.++.-..+- .+.... ...|-+.+.+.|.
T Consensus 463 ey~~I~vrIL~iLG~EgP~a~~P~~yvrhIyNR~iLEN~ivRsaAv~aLskf~ln~~d--~~~~~sv~~~lkRclnD~Dd 540 (898)
T COG5240 463 EYHQITVRILGILGREGPRAKTPGKYVRHIYNRLILENNIVRSAAVQALSKFALNISD--VVSPQSVENALKRCLNDQDD 540 (898)
T ss_pred chhHHHHHHHHHhcccCCCCCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHhccCccc--cccHHHHHHHHHHHhhcccH
Confidence 3222111111 1111 133444433345667888888888776332211 011111 2346678889999
Q ss_pred hhhHHHHHHHHHHhc
Q 001833 986 SMKSLSARVLAHLNV 1000 (1008)
Q Consensus 986 ~~~~~Aa~~L~~L~~ 1000 (1008)
++|..|+-.|+.|..
T Consensus 541 eVRdrAsf~l~~~~~ 555 (898)
T COG5240 541 EVRDRASFLLRNMRL 555 (898)
T ss_pred HHHHHHHHHHHhhhh
Confidence 999999999998863
No 107
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=97.78 E-value=1.8e-05 Score=61.02 Aligned_cols=47 Identities=21% Similarity=0.386 Sum_probs=40.8
Q ss_pred ccccccccccccCCceeccCccc-ccHHHHHHHHhcCCCCCCCcCccCC
Q 001833 264 QSFYCPITRDVMVDPVETSSGQT-FERSAIEKWFSDGNNLCPLTMTVLD 311 (1008)
Q Consensus 264 ~~~~cpi~~~~m~dpv~~~~g~t-~~r~~i~~w~~~~~~~cp~~~~~l~ 311 (1008)
+++.|+|+++-+.++++.++||. |+..++.+|+. +...||+++++++
T Consensus 1 ~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~-~~~~CP~Cr~~i~ 48 (50)
T PF13920_consen 1 EDEECPICFENPRDVVLLPCGHLCFCEECAERLLK-RKKKCPICRQPIE 48 (50)
T ss_dssp -HSB-TTTSSSBSSEEEETTCEEEEEHHHHHHHHH-TTSBBTTTTBB-S
T ss_pred CcCCCccCCccCCceEEeCCCChHHHHHHhHHhcc-cCCCCCcCChhhc
Confidence 46789999999999999999999 99999999997 5678999998875
No 108
>PHA02929 N1R/p28-like protein; Provisional
Probab=97.77 E-value=2e-05 Score=81.10 Aligned_cols=47 Identities=21% Similarity=0.434 Sum_probs=40.5
Q ss_pred ccccccccccccCCc--------eeccCcccccHHHHHHHHhcCCCCCCCcCccCC
Q 001833 264 QSFYCPITRDVMVDP--------VETSSGQTFERSAIEKWFSDGNNLCPLTMTVLD 311 (1008)
Q Consensus 264 ~~~~cpi~~~~m~dp--------v~~~~g~t~~r~~i~~w~~~~~~~cp~~~~~l~ 311 (1008)
++..||||++.+.+| ++.+|||+||+.||.+|+.. +.+||+|+.++.
T Consensus 173 ~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~-~~tCPlCR~~~~ 227 (238)
T PHA02929 173 KDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKE-KNTCPVCRTPFI 227 (238)
T ss_pred CCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhc-CCCCCCCCCEee
Confidence 578999999988764 56789999999999999864 668999998875
No 109
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=97.74 E-value=0.0004 Score=63.22 Aligned_cols=131 Identities=13% Similarity=0.078 Sum_probs=112.8
Q ss_pred cchHHHHHHHhc-CCChHHHHHHHHHHHhhcCCcccHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHHcCChhhHHH
Q 001833 460 QGCILLLVTMAS-SDDNQASRDAQELLENLSFSDDNVVQMAKANYFKHLLQRLSAGPESVKMRMATTLAEMELTDHHKAS 538 (1008)
Q Consensus 460 ~g~i~~Lv~lL~-~~~~~~~~~a~~aL~~Ls~~~~n~~~i~~~g~v~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~~~~k~~ 538 (1008)
.+-+..||+-.+ ..+.+.++....-|.|.+.++-|-..+.+..+++.++..|...+..+++.+.+.|+|++....++..
T Consensus 15 l~Ylq~LV~efq~tt~~eakeqv~ANLANFAYDP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~d~~n~~~ 94 (173)
T KOG4646|consen 15 LEYLQHLVDEFQTTTNIEAKEQVTANLANFAYDPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCLDKTNAKF 94 (173)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhccCcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhccChHHHHH
Confidence 355677777766 4688899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcCcHHHHHHHhccCCHHHHHHHHHHHHHhhCC-CchhHHHHhcCChHHHHHHhc
Q 001833 539 LLEGNVLGPLLHLVSRGDIQMKKVAVKALRNLSSV-PQNGLQMIKEGAVGPLVDLLL 594 (1008)
Q Consensus 539 i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~-~~~~~~i~~~G~v~~Ll~ll~ 594 (1008)
|.+.+++|.++..++++.......|+.++..|+.. ...+..+.. |+.++.+.
T Consensus 95 I~ea~g~plii~~lssp~e~tv~sa~~~l~~l~~~~Rt~r~ell~----p~Vv~~v~ 147 (173)
T KOG4646|consen 95 IREALGLPLIIFVLSSPPEITVHSAALFLQLLEFGERTERDELLS----PAVVRTVQ 147 (173)
T ss_pred HHHhcCCceEEeecCCChHHHHHHHHHHHHHhcCcccchhHHhcc----HHHHHHHH
Confidence 99999999999999999988999999999999963 345666655 44444443
No 110
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=97.70 E-value=2.1e-05 Score=79.59 Aligned_cols=65 Identities=25% Similarity=0.321 Sum_probs=57.4
Q ss_pred cccccccccccCCceeccCcccccHHHHHHHHhcCCCCCCCcCccCCCCCCccCHhhHHHHHHHHH
Q 001833 265 SFYCPITRDVMVDPVETSSGQTFERSAIEKWFSDGNNLCPLTMTVLDTSILRPNKTLRQSIEEWKD 330 (1008)
Q Consensus 265 ~~~cpi~~~~m~dpv~~~~g~t~~r~~i~~w~~~~~~~cp~~~~~l~~~~l~pN~~l~~~I~~w~~ 330 (1008)
-++|-||.+.++-|++++||||||--||..++.. +++||+|+.+....-+.-|..++..++.+..
T Consensus 25 ~lrC~IC~~~i~ip~~TtCgHtFCslCIR~hL~~-qp~CP~Cr~~~~esrlr~~s~~~ei~es~~~ 89 (391)
T COG5432 25 MLRCRICDCRISIPCETTCGHTFCSLCIRRHLGT-QPFCPVCREDPCESRLRGSSGSREINESHAR 89 (391)
T ss_pred HHHhhhhhheeecceecccccchhHHHHHHHhcC-CCCCccccccHHhhhcccchhHHHHHHhhhh
Confidence 5799999999999999999999999999999954 7789999999988888888877777777643
No 111
>PRK14707 hypothetical protein; Provisional
Probab=97.69 E-value=0.43 Score=62.08 Aligned_cols=577 Identities=15% Similarity=0.143 Sum_probs=266.4
Q ss_pred HHHHHHHHHHHHhhchhhhhhHhhcCchHHHHHHH-cCCCHHHHHHHHHHHHHhccCChhhHHHhhccCCcHHHHHHHhc
Q 001833 352 VLHCLEQLQDLCQQRDQHREWVILENYIPKLIYLL-GSKNRDVRNRALIILHILVKDSNDTKERLANGDDAVESIVRSLG 430 (1008)
Q Consensus 352 ~~~al~~L~~l~~~~~~~r~~i~~~g~i~~L~~lL-~s~~~~~~~~Al~~L~~Ls~~~~~~k~~i~~~~g~i~~Lv~~L~ 430 (1008)
...+...|..+-...+.-|.-+...| |..+++-+ +-.+.....+|+..|...-..++.-+ .-++ ..++...+.-|+
T Consensus 181 c~~aa~~la~~~~~~d~~~~~~~~q~-ia~~lNa~sKWp~~~~c~~aa~~la~~l~~~~~l~-~~~~-~q~va~~lN~ls 257 (2710)
T PRK14707 181 CQAVAPRFAALVASDDRLRSAMDAQG-VATVLNALCKWPDTPDCGNAVSALAERLADESRLR-NELK-PQELGNALNALS 257 (2710)
T ss_pred HHHHHHHHHHHhcCChhhhcccchHH-HHHHHHHHhcCCCChhHHHHHHHHHHHHcCcHHHH-HhCC-hHHHHHHHHHHh
Confidence 34444445443333334455453334 44444444 33444455556655554333332333 3344 566777777776
Q ss_pred c--ChhHHHHHHHHHH-HhccCchhhHHhhcccchHHHHHHHhc-CCChHHHHHHHHHH-HhhcCCcccHHHHHhcCcHH
Q 001833 431 R--RIEERKLAVALLL-ELSTCNTLRDQIGDVQGCILLLVTMAS-SDDNQASRDAQELL-ENLSFSDDNVVQMAKANYFK 505 (1008)
Q Consensus 431 ~--~~~~~~~A~~~L~-~Ls~~~~~~~~i~~~~g~i~~Lv~lL~-~~~~~~~~~a~~aL-~~Ls~~~~n~~~i~~~g~v~ 505 (1008)
+ +..+..+|+..|. .++.++..+..+.- .+ +.-.++-|+ .++..+-..|+..| ..|....+-+..+ +.-.+.
T Consensus 258 Kwp~~~~C~~a~~~lA~rl~~~~~l~~al~~-q~-vanalNalSKwpd~~vc~~Aa~~la~rl~~d~~l~~~~-~~~~~~ 334 (2710)
T PRK14707 258 KWADTPVCAAAASALAERLVDDPGLRKALDP-IN-VTQALNALSKWADLPVCAEAAIALAERLADDPELCKAL-NARGLS 334 (2710)
T ss_pred cCCCchHHHHHHHHHHHHHhhhHHHHHhcCH-HH-HHHHHhhhhcCCCchHHHHHHHHHHHHHhccHhhhhcc-chHHHH
Confidence 6 3344555555554 46666666666642 22 333333343 44554444444444 3444433333222 222333
Q ss_pred HHHHHHhc-CCHHHHHHHHHHHH-HHcCChhhHHHHhhcCcHHHHHHHhcc-CCHHHHHHHHHHHH-HhhCCCchhHHHH
Q 001833 506 HLLQRLSA-GPESVKMRMATTLA-EMELTDHHKASLLEGNVLGPLLHLVSR-GDIQMKKVAVKALR-NLSSVPQNGLQMI 581 (1008)
Q Consensus 506 ~Lv~~L~~-~~~~~~~~aa~~L~-~Ls~~~~~k~~i~~~g~i~~Lv~lL~~-~~~~~~~~A~~aL~-~L~~~~~~~~~i~ 581 (1008)
..+..|+. ++......++.+|. .|...++-+..+-.. ++...+.-|+. ++..+-..|+.+|. .|..+++-+..+-
T Consensus 335 ~~LNalsKWpd~~~C~~Aa~~LA~rl~~d~~l~~~l~~q-~~a~~lNalsKWp~~~~c~~aa~~LA~~l~~d~~l~~~~~ 413 (2710)
T PRK14707 335 TALNALSKWPDNPVCAAAVSALAERLVADPELRKDLEPQ-GVSSVLNALSKWPDTPVCAAAASALAEHVVDDLELRKGLD 413 (2710)
T ss_pred HHHHHhhcCCCchhHHHHHHHHHHHhccCHhhhcccchh-HHHHHHhhhhcCCCchHHHHHHHHHHHHhccChhhhhhcc
Confidence 33344432 23344455555554 566666666655433 34444444443 33334444444443 4555666665554
Q ss_pred hcCChHHHHHHhcccCCCCcchHHHHHHHHH-HHhccccccccCCcccccccchhHHHHHHHhhc-cCChHHHHHHHHHH
Q 001833 582 KEGAVGPLVDLLLHHSSSSSSLREETATAIM-HLAVSTMYQESSQTPVTLLESDKEIFMLFSLIN-LTGPNVQQRILQTF 659 (1008)
Q Consensus 582 ~~G~v~~Ll~ll~~~~~~~~~~~~~a~~~L~-nLa~~~~~~~~~~~~~~~l~~~~~i~~L~~ll~-~~~~~v~~~al~aL 659 (1008)
-. .|...++-+..-.+. .+...++..|. .++.+.+-+.. +. ...|...+..++ =++..+...+...|
T Consensus 414 ~Q-~van~lnalsKWPd~--~~C~~aa~~lA~~la~d~~l~~~-------~~-p~~va~~LnalSKWPd~p~c~~aa~~L 482 (2710)
T PRK14707 414 PQ-GVSNALNALAKWPDL--PICGQAVSALAGRLAHDTELCKA-------LD-PINVTQALDALSKWPDTPICGQTASAL 482 (2710)
T ss_pred hh-hHHHHHHHhhcCCcc--hhHHHHHHHHHHHHhccHHHHhh-------cC-hHHHHHHHHHhhcCCCChhHHHHHHHH
Confidence 44 455555555544332 23444444443 34433332221 21 122333333333 22333333333333
Q ss_pred HH-hccCCChhhHHHHhhhcCChHHHHHhhccCChhH-HHHHHHHHHHhccCCChhHHHhhhcccchHHHHHHhcCCCCH
Q 001833 660 NA-LCRSPSAGNIKTTLTQCSAIPVLVQLCEHDNENV-RANAVKLFCCLVDDGDEAIIREHVGQKCLETLVTIIQSSHNE 737 (1008)
Q Consensus 660 ~~-L~~~~~~~~~~~~i~e~~~i~~Lv~ll~~~~~~v-~~~a~~~L~~Ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~ 737 (1008)
.. |+.. .+.++.+.-.++...|-.|-+-++... ...+.++...+. .+......+....+..+++-+....+.
T Consensus 483 a~~l~~~---~~l~~a~~~q~~~~~L~aLSK~Pd~~~c~~A~~~lA~rl~---~~~~l~~~~~~~~~~~~lnalSKwp~s 556 (2710)
T PRK14707 483 AARLAHE---RRLRKALKPQEVVIALHSLSKWPDTPICAEAASALAERVV---DELQLRKAFDAHQVVNTLKALSKWPDK 556 (2710)
T ss_pred HHHhccc---HHHHhhcCHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHhc---cchhhhhhhhhHHHHHHHHhhhcCCch
Confidence 32 3322 223444444444444444445554332 222222333332 122222333334455555656555444
Q ss_pred HHHHHHHHHHhcCCC-ChhhHHHHHhcCCHHHHHHHhhCCCCCCCchhhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChH
Q 001833 738 EEIASAMGILSKLPE-VPQFTQWLLDAGALPIVLNFLKNGRQNDPNRFQVVENAVGALRRFTAPTNLEWQKRAAEAGVIP 816 (1008)
Q Consensus 738 ~v~~~a~~~L~nL~~-~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~v~~~a~~aL~~L~~~~~~~~~~~l~~~g~l~ 816 (1008)
.....++..|..+.. ++.... -.+...|..+++.|..-. .....++.+.+.-..+.. .+..+..+...++-.
T Consensus 557 ~~C~~A~~~iA~~l~~~~~~~~-~L~aq~Vs~llNaLSKWP----~~~aC~~Aa~~LA~~l~~--~~~lr~~l~~q~lan 629 (2710)
T PRK14707 557 QLCAVAASGLAERLADEPQLPK-DLHRQGVVIVLNALSKWP----DTAVCAEAVNALAERLVD--EPDLRKELDPVDVTN 629 (2710)
T ss_pred hHHHHHHHHHHHHhhcchhhHH-hhhhhHHHHHHHhhccCC----CcHHHHHHHHHHHHHhcc--ChhhhhhccHHHHHH
Confidence 455555555555444 333333 334556677777776521 345566666666666665 566655554444434
Q ss_pred HHHHHhhcCChHHHHHHHHHHhhhhhcCCCCCCCCCCCCcccccCCCCCCcccccCcccCcccchhHhhccchHHHHHhh
Q 001833 817 KLVQLLEYGTTLTKEHAATSLARFSKNSLGLSRPIPKRKGFWCFSPPPEIGCQVHGGLCGIESSFCLLEANAVRPLVRVL 896 (1008)
Q Consensus 817 ~Lv~lL~~~~~~v~~~Aa~aL~nLs~~~~~l~~~~~~~~g~~~~~~~~~~~c~vh~~~c~~~~~~~l~~~g~i~~Lv~lL 896 (1008)
.+-.+-+.++....+.++..|..-......+.. -...--|.-+++-|
T Consensus 630 ~lNALSKWP~s~~C~~Aa~rLA~rl~~~~~l~~---------------------------------~fnaQ~vAn~LNAL 676 (2710)
T PRK14707 630 VLNALSKWPGTEVCAEVARLLAGRLVGDRLLRK---------------------------------TFNSLDVANALNAL 676 (2710)
T ss_pred HHhhhhcCCCchHHHHHHHHHHHHhhhchhhHh---------------------------------hcchHHHHHHHHhh
Confidence 333333344556666666665443211111100 01122355555555
Q ss_pred c-CCChhhhHHHHHHHHhhh-cccccchhhHHHHhcCchHHHHHHh-cCC-ChHHHHHHHHHHHHHhcChHHHHHhcccc
Q 001833 897 E-DPDHGACEASLDALVTLI-EGERLQNGSKVLEDANAIDRMVRFL-SSP-SPKLQEKALDSVERIFRLPEFKQKYGKSA 972 (1008)
Q Consensus 897 ~-~~d~~v~~~al~aL~~L~-~~~~~~~~~~~i~~~~~i~~l~~ll-~~~-~~~l~~~a~~~L~~l~~~~~~~~~~~~~~ 972 (1008)
+ =++.+++..|..+|..-+ .. ...+.. ....++..+++-+ +.+ ++.-+..+.++-.++...+.....|..-.
T Consensus 677 SKWPe~e~Cr~Aa~~LA~rLa~~---~~Lr~a-l~pQ~vAN~LNALSKWP~~~~Cr~AA~~LA~rL~~~p~l~~a~~aQe 752 (2710)
T PRK14707 677 SKWPDTPVCAAAAGGMAERLAAD---PGLRKE-LNPVDVANALNALSKWPRTPVCAAVASALAARVVAEPRLRKAFDAQQ 752 (2710)
T ss_pred hcCCCchHHHHHHHHHHHHHhcC---hhhHhh-cCHHHHHHHHhhhhcCCCcHHHHHHHHHHHHHHhcChhhhhhcCHHH
Confidence 4 355667777777777666 22 123332 3344555555555 344 45566666777777777777665554333
Q ss_pred Cchhhhhccc-CCchhhHHHHHHHH
Q 001833 973 QMPLVDLTQR-GNSSMKSLSARVLA 996 (1008)
Q Consensus 973 ~~~Lv~l~~~-~~~~~~~~Aa~~L~ 996 (1008)
....++.+.. .+.+.-..|+.+|+
T Consensus 753 vANaLNALSKWPd~~~C~~AA~aLA 777 (2710)
T PRK14707 753 VATALNALSKWPDNQACAAAANTLA 777 (2710)
T ss_pred HHHHHHHhhcCCCchHHHHHHHHHH
Confidence 3333433333 33333333434443
No 112
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=97.68 E-value=0.0036 Score=70.67 Aligned_cols=254 Identities=17% Similarity=0.223 Sum_probs=157.0
Q ss_pred CChHHHHHhhccCChhHHHHHHHHHHHhccCCChhHHHhhhcccchHHHHHHhcCC---CCHHHHHHHHHHHhcCCCChh
Q 001833 679 SAIPVLVQLCEHDNENVRANAVKLFCCLVDDGDEAIIREHVGQKCLETLVTIIQSS---HNEEEIASAMGILSKLPEVPQ 755 (1008)
Q Consensus 679 ~~i~~Lv~ll~~~~~~v~~~a~~~L~~Ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~---~~~~v~~~a~~~L~nL~~~~~ 755 (1008)
..+..++.+|+++.+.+|..|+.+...|+. .+....+..-+..|=.+|... ..+++.-..+.++..+.+...
T Consensus 604 ~ivStiL~~L~~k~p~vR~~aadl~~sl~~-----vlk~c~e~~~l~klg~iLyE~lge~ypEvLgsil~Ai~~I~sv~~ 678 (975)
T COG5181 604 MIVSTILKLLRSKPPDVRIRAADLMGSLAK-----VLKACGETKELAKLGNILYENLGEDYPEVLGSILKAICSIYSVHR 678 (975)
T ss_pred HHHHHHHHHhcCCCccHHHHHHHHHHHHHH-----HHHhcchHHHHHHHhHHHHHhcCcccHHHHHHHHHHHHHHhhhhc
Confidence 346677889999999999999998887761 111111122223332333222 455666666666666544111
Q ss_pred hHH-HHHhcCCHHHHHHHhhCCCCCCCchhhHHHHHHHHHHHhcCCCCHH------HHHHHHHcCChHHHHHHhhcCChH
Q 001833 756 FTQ-WLLDAGALPIVLNFLKNGRQNDPNRFQVVENAVGALRRFTAPTNLE------WQKRAAEAGVIPKLVQLLEYGTTL 828 (1008)
Q Consensus 756 ~~~-~l~~~g~l~~Lv~lL~~~~~~~~~~~~v~~~a~~aL~~L~~~~~~~------~~~~l~~~g~l~~Lv~lL~~~~~~ 828 (1008)
.+. .=--.|.+|.|.-+|++ ....++.+.+..++.++.. .|+ |.+.- --|+++|.+.+.+
T Consensus 679 ~~~mqpPi~~ilP~ltPILrn------kh~Kv~~nti~lvg~I~~~-~peyi~~rEWMRIc------feLvd~Lks~nKe 745 (975)
T COG5181 679 FRSMQPPISGILPSLTPILRN------KHQKVVANTIALVGTICMN-SPEYIGVREWMRIC------FELVDSLKSWNKE 745 (975)
T ss_pred ccccCCchhhccccccHhhhh------hhHHHhhhHHHHHHHHHhc-CcccCCHHHHHHHH------HHHHHHHHHhhHH
Confidence 100 00024788999999998 6788999999999999876 333 33322 2378888999999
Q ss_pred HHHHHHHHHhhhhhcCCCCCCCCCCCCcccccCCCCCCcccccCcccCcccchhHhhccchHHHHHhhcCCChhhhHHHH
Q 001833 829 TKEHAATSLARFSKNSLGLSRPIPKRKGFWCFSPPPEIGCQVHGGLCGIESSFCLLEANAVRPLVRVLEDPDHGACEASL 908 (1008)
Q Consensus 829 v~~~Aa~aL~nLs~~~~~l~~~~~~~~g~~~~~~~~~~~c~vh~~~c~~~~~~~l~~~g~i~~Lv~lL~~~d~~v~~~al 908 (1008)
+|++|..+++-++.- - .-..++..|++-|+.++-+.|....
T Consensus 746 iRR~A~~tfG~Is~a-----------i----------------------------GPqdvL~~LlnnLkvqeRq~Rvcts 786 (975)
T COG5181 746 IRRNATETFGCISRA-----------I----------------------------GPQDVLDILLNNLKVQERQQRVCTS 786 (975)
T ss_pred HHHhhhhhhhhHHhh-----------c----------------------------CHHHHHHHHHhcchHHHHHhhhhhh
Confidence 999999999998831 1 1223566666666655555444333
Q ss_pred HHHHhhhcccccchhhHHHHhcCchHHHHHHh---cCCChHHHHHHHHHHHHHhcChH-HHHHhccccCchhhhhcccCC
Q 001833 909 DALVTLIEGERLQNGSKVLEDANAIDRMVRFL---SSPSPKLQEKALDSVERIFRLPE-FKQKYGKSAQMPLVDLTQRGN 984 (1008)
Q Consensus 909 ~aL~~L~~~~~~~~~~~~i~~~~~i~~l~~ll---~~~~~~l~~~a~~~L~~l~~~~~-~~~~~~~~~~~~Lv~l~~~~~ 984 (1008)
-|+.-.. .-+|-...+-.++ .-++.-+|.-.+..+.-+|..-. ....|--...+.|-+.+.+.|
T Consensus 787 vaI~iVa------------e~cgpfsVlP~lm~dY~TPe~nVQnGvLkam~fmFeyig~~s~dYvy~itPlleDAltDrD 854 (975)
T COG5181 787 VAISIVA------------EYCGPFSVLPTLMSDYETPEANVQNGVLKAMCFMFEYIGQASLDYVYSITPLLEDALTDRD 854 (975)
T ss_pred hhhhhhH------------hhcCchhhHHHHHhcccCchhHHHHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhcccc
Confidence 3333332 1122233333344 34556688888888877776432 222232223455678999999
Q ss_pred chhhHHHHHHHHHHhcc
Q 001833 985 SSMKSLSARVLAHLNVL 1001 (1008)
Q Consensus 985 ~~~~~~Aa~~L~~L~~~ 1001 (1008)
+.-|+.|+.++.||...
T Consensus 855 ~vhRqta~nvI~Hl~Ln 871 (975)
T COG5181 855 PVHRQTAMNVIRHLVLN 871 (975)
T ss_pred hHHHHHHHHHHHHHhcC
Confidence 99999999999998654
No 113
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=97.67 E-value=0.0004 Score=63.26 Aligned_cols=125 Identities=18% Similarity=0.162 Sum_probs=103.9
Q ss_pred CcHHHHHHHhcc--ChhHHHHHHHHHHHhccCchhhHHhhcccchHHHHHHHhcCCChHHHHHHHHHHHhhcCCcccHHH
Q 001833 420 DAVESIVRSLGR--RIEERKLAVALLLELSTCNTLRDQIGDVQGCILLLVTMASSDDNQASRDAQELLENLSFSDDNVVQ 497 (1008)
Q Consensus 420 g~i~~Lv~~L~~--~~~~~~~A~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~~~n~~~ 497 (1008)
+.+..||.-... +.+.++...+-|.+.+-+|-+...+-. ..++...|.-+...+....+.++..|.|+|.++.|+..
T Consensus 16 ~Ylq~LV~efq~tt~~eakeqv~ANLANFAYDP~Nys~Lrq-l~vLdlFvdsl~e~ne~LvefgIgglCNlC~d~~n~~~ 94 (173)
T KOG4646|consen 16 EYLQHLVDEFQTTTNIEAKEQVTANLANFAYDPINYSHLRQ-LDVLDLFVDSLEEQNELLVEFGIGGLCNLCLDKTNAKF 94 (173)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhccCcchHHHHHH-hhHHHHHHHHhhcccHHHHHHhHHHHHhhccChHHHHH
Confidence 455566666543 567888999999999999988887776 78999999999999999999999999999999999999
Q ss_pred HHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHHcCCh-hhHHHHhhcCcH
Q 001833 498 MAKANYFKHLLQRLSAGPESVKMRMATTLAEMELTD-HHKASLLEGNVL 545 (1008)
Q Consensus 498 i~~~g~v~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~~-~~k~~i~~~g~i 545 (1008)
|.++++++.++..+++++......++..+..|+... ..+..+.....+
T Consensus 95 I~ea~g~plii~~lssp~e~tv~sa~~~l~~l~~~~Rt~r~ell~p~Vv 143 (173)
T KOG4646|consen 95 IREALGLPLIIFVLSSPPEITVHSAALFLQLLEFGERTERDELLSPAVV 143 (173)
T ss_pred HHHhcCCceEEeecCCChHHHHHHHHHHHHHhcCcccchhHHhccHHHH
Confidence 999999999999999998888888999998887655 344445443333
No 114
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=97.67 E-value=7e-05 Score=55.03 Aligned_cols=40 Identities=38% Similarity=0.414 Sum_probs=37.9
Q ss_pred CHHHHHHHHHcCChHHHHHHhhcCChHHHHHHHHHHhhhh
Q 001833 802 NLEWQKRAAEAGVIPKLVQLLEYGTTLTKEHAATSLARFS 841 (1008)
Q Consensus 802 ~~~~~~~l~~~g~l~~Lv~lL~~~~~~v~~~Aa~aL~nLs 841 (1008)
+++.++.+.+.|++|.|+++|+++++.+++.|+|+|+||+
T Consensus 1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp SHHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 4778899999999999999999999999999999999997
No 115
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=97.62 E-value=0.00011 Score=53.93 Aligned_cols=41 Identities=27% Similarity=0.430 Sum_probs=38.0
Q ss_pred ChhhHHHHhhcCcHHHHHHHhccCCHHHHHHHHHHHHHhhC
Q 001833 532 TDHHKASLLEGNVLGPLLHLVSRGDIQMKKVAVKALRNLSS 572 (1008)
Q Consensus 532 ~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~ 572 (1008)
+++++..+.+.|++|.|+++|.++++.+++.|+++|+||+.
T Consensus 1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLAA 41 (41)
T ss_dssp SHHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 36788899999999999999999999999999999999974
No 116
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.59 E-value=4.3e-05 Score=86.32 Aligned_cols=68 Identities=25% Similarity=0.483 Sum_probs=58.7
Q ss_pred ccccccccccccCCceeccCcccccHHHHHHHHhcCCCCCCCcCccCCCCCCccCHhhHHHHHHHHHhccc
Q 001833 264 QSFYCPITRDVMVDPVETSSGQTFERSAIEKWFSDGNNLCPLTMTVLDTSILRPNKTLRQSIEEWKDRNTM 334 (1008)
Q Consensus 264 ~~~~cpi~~~~m~dpv~~~~g~t~~r~~i~~w~~~~~~~cp~~~~~l~~~~l~pN~~l~~~I~~w~~~~~~ 334 (1008)
+++.||||++.|++|++++|||||||.||..|+. +...||.|+. . ...+.||..+..++......+..
T Consensus 12 ~~~~C~iC~~~~~~p~~l~C~H~~c~~C~~~~~~-~~~~Cp~cr~-~-~~~~~~n~~l~~~~~~~~~~~~~ 79 (386)
T KOG2177|consen 12 EELTCPICLEYFREPVLLPCGHNFCRACLTRSWE-GPLSCPVCRP-P-SRNLRPNVLLANLVERLRQLRLS 79 (386)
T ss_pred ccccChhhHHHhhcCccccccchHhHHHHHHhcC-CCcCCcccCC-c-hhccCccHHHHHHHHHHHhcCCc
Confidence 7899999999999999999999999999999998 7778999986 3 23777999999888888765543
No 117
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=97.58 E-value=6.6e-05 Score=56.33 Aligned_cols=43 Identities=42% Similarity=0.806 Sum_probs=38.6
Q ss_pred cccccccccCCceecc-CcccccHHHHHHHHhcCCCCCCCcCcc
Q 001833 267 YCPITRDVMVDPVETS-SGQTFERSAIEKWFSDGNNLCPLTMTV 309 (1008)
Q Consensus 267 ~cpi~~~~m~dpv~~~-~g~t~~r~~i~~w~~~~~~~cp~~~~~ 309 (1008)
.|||+++.+.+|+.+. +||.|++.++.+|+..+...||.++..
T Consensus 1 ~C~iC~~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~Cp~C~~~ 44 (45)
T cd00162 1 ECPICLEEFREPVVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTP 44 (45)
T ss_pred CCCcCchhhhCceEecCCCChhcHHHHHHHHHhCcCCCCCCCCc
Confidence 4899999999998887 999999999999998877889998765
No 118
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.57 E-value=0.0032 Score=72.54 Aligned_cols=224 Identities=17% Similarity=0.203 Sum_probs=161.7
Q ss_pred ChHHHHHhhccCChhHHHHHHHHHHHhccCCChhHHHhhhcccchHHHHHHhcCCCCHHHHHHHHHHHhcCCC-ChhhHH
Q 001833 680 AIPVLVQLCEHDNENVRANAVKLFCCLVDDGDEAIIREHVGQKCLETLVTIIQSSHNEEEIASAMGILSKLPE-VPQFTQ 758 (1008)
Q Consensus 680 ~i~~Lv~ll~~~~~~v~~~a~~~L~~Ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~v~~~a~~~L~nL~~-~~~~~~ 758 (1008)
..+-++.||.+.-+-+|..|+.+++.+...+++ .+. ..++.|++-|.+ +++.++.+|+.+++.|+. +|...-
T Consensus 145 La~Dv~tLL~sskpYvRKkAIl~lykvFLkYPe-Alr-----~~FprL~EkLeD-pDp~V~SAAV~VICELArKnPknyL 217 (877)
T KOG1059|consen 145 LADDVFTLLNSSKPYVRKKAILLLYKVFLKYPE-ALR-----PCFPRLVEKLED-PDPSVVSAAVSVICELARKNPQNYL 217 (877)
T ss_pred HHHHHHHHHhcCchHHHHHHHHHHHHHHHhhhH-hHh-----hhHHHHHHhccC-CCchHHHHHHHHHHHHHhhCCcccc
Confidence 456688999999999999999999988633332 221 467999999999 577899999999999998 776643
Q ss_pred HHHhcCCHHHHHHHhhCCCCCCCchhhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHHHhhcCCh-HHHHHHHHHH
Q 001833 759 WLLDAGALPIVLNFLKNGRQNDPNRFQVVENAVGALRRFTAPTNLEWQKRAAEAGVIPKLVQLLEYGTT-LTKEHAATSL 837 (1008)
Q Consensus 759 ~l~~~g~l~~Lv~lL~~~~~~~~~~~~v~~~a~~aL~~L~~~~~~~~~~~l~~~g~l~~Lv~lL~~~~~-~v~~~Aa~aL 837 (1008)
. .-|.+.++|.+. .+.++.-..+..+++|+-- .|..... +++.|.++++++.. .+-..+..++
T Consensus 218 ~-----LAP~ffkllttS-----sNNWmLIKiiKLF~aLtpl-EPRLgKK-----Lieplt~li~sT~AmSLlYECvNTV 281 (877)
T KOG1059|consen 218 Q-----LAPLFYKLLVTS-----SNNWVLIKLLKLFAALTPL-EPRLGKK-----LIEPITELMESTVAMSLLYECVNTV 281 (877)
T ss_pred c-----ccHHHHHHHhcc-----CCCeehHHHHHHHhhcccc-Cchhhhh-----hhhHHHHHHHhhHHHHHHHHHHHHh
Confidence 2 358888888874 4678888999999999976 6776654 47899999998765 4455555554
Q ss_pred hhhhhcCCCCCCCCCCCCcccccCCCCCCcccccCcccCcccchhHhhccchHHHHHhhcCCChhhhHHHHHHHHhhh-c
Q 001833 838 ARFSKNSLGLSRPIPKRKGFWCFSPPPEIGCQVHGGLCGIESSFCLLEANAVRPLVRVLEDPDHGACEASLDALVTLI-E 916 (1008)
Q Consensus 838 ~nLs~~~~~l~~~~~~~~g~~~~~~~~~~~c~vh~~~c~~~~~~~l~~~g~i~~Lv~lL~~~d~~v~~~al~aL~~L~-~ 916 (1008)
-.-+.++. + | .|+.-... ++..|-.++.+.|++.+..++-|+..++ .
T Consensus 282 Va~s~s~g----------~------------~----d~~asiqL------CvqKLr~fiedsDqNLKYlgLlam~KI~kt 329 (877)
T KOG1059|consen 282 VAVSMSSG----------M------------S----DHSASIQL------CVQKLRIFIEDSDQNLKYLGLLAMSKILKT 329 (877)
T ss_pred eeehhccC----------C------------C----CcHHHHHH------HHHHHhhhhhcCCccHHHHHHHHHHHHhhh
Confidence 43322111 0 0 00100111 3566667788999999999999999998 2
Q ss_pred ccccchhhHHHHhcCchHHHHHHhcCCChHHHHHHHHHHHHHhcChHHHH
Q 001833 917 GERLQNGSKVLEDANAIDRMVRFLSSPSPKLQEKALDSVERIFRLPEFKQ 966 (1008)
Q Consensus 917 ~~~~~~~~~~i~~~~~i~~l~~ll~~~~~~l~~~a~~~L~~l~~~~~~~~ 966 (1008)
.. .. +..+ -+.|++++.+.++.+|-+|+.++..+....++.+
T Consensus 330 Hp---~~---Vqa~--kdlIlrcL~DkD~SIRlrALdLl~gmVskkNl~e 371 (877)
T KOG1059|consen 330 HP---KA---VQAH--KDLILRCLDDKDESIRLRALDLLYGMVSKKNLME 371 (877)
T ss_pred CH---HH---HHHh--HHHHHHHhccCCchhHHHHHHHHHHHhhhhhHHH
Confidence 21 11 1122 3568999999999999999999999987776543
No 119
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=97.55 E-value=0.18 Score=57.12 Aligned_cols=439 Identities=17% Similarity=0.160 Sum_probs=220.3
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHhccCChhhHHHhhccCCcHHHHHHHhccCh--hHHHHHHHHHHHhccCchhhHHhhc
Q 001833 381 KLIYLLGSKNRDVRNRALIILHILVKDSNDTKERLANGDDAVESIVRSLGRRI--EERKLAVALLLELSTCNTLRDQIGD 458 (1008)
Q Consensus 381 ~L~~lL~s~~~~~~~~Al~~L~~Ls~~~~~~k~~i~~~~g~i~~Lv~~L~~~~--~~~~~A~~~L~~Ls~~~~~~~~i~~ 458 (1008)
.+..+..+.++..|...-.++..|+.-.++.- -+...+.+=+..+. ..+..|+..|...-..... -.+.
T Consensus 69 ~i~KlFQhkd~~Lrq~VY~aIkelS~~tedvl-------m~tssiMkD~~~g~~~~~kp~AiRsL~~Vid~~tv-~~~e- 139 (898)
T COG5240 69 AILKLFQHKDLYLRQCVYSAIKELSKLTEDVL-------MGTSSIMKDLNGGVPDDVKPMAIRSLFSVIDGETV-YDFE- 139 (898)
T ss_pred HHHHHHhcCChHHHHHHHHHHHHHhhcchhhh-------HHHHHHHHhhccCCccccccHHHHHHHHhcCcchh-hhHH-
Confidence 35566678888888877778877776552211 12334444444432 3456666666654321110 0000
Q ss_pred ccchHHHHHHHhcCCChHHHHHHHHHHHhhcCCcccHHHHHhcCcHHHHHHHH------------hcCCHHHHHHHHHHH
Q 001833 459 VQGCILLLVTMASSDDNQASRDAQELLENLSFSDDNVVQMAKANYFKHLLQRL------------SAGPESVKMRMATTL 526 (1008)
Q Consensus 459 ~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~~~n~~~i~~~g~v~~Lv~~L------------~~~~~~~~~~aa~~L 526 (1008)
..|-+..-+..+..+..|+-.=++|-....+...--....-+.++.+- .++++-.+..|++.|
T Consensus 140 -----r~l~~a~Vs~~~a~~saalv~aYhLlp~~~~~~~rw~ne~qeav~~l~q~p~~~~n~gy~Pn~~~isqYHalGlL 214 (898)
T COG5240 140 -----RYLNQAFVSTSMARRSAALVVAYHLLPNNFNQTKRWLNETQEAVLDLKQFPNQHGNEGYEPNGNPISQYHALGLL 214 (898)
T ss_pred -----HHhhhhccccchhhhhhHHHHhhhhccccHHHHHHHHHHHHHHHhhHhhCcCccCCcccCCCCChHHHHHHHHHH
Confidence 011111123455555555555555543333321111111111222211 123455778888888
Q ss_pred HHHcCChhhHHHHhhcCcHHHHHHHhccCCHHHHHHH-----HHHHHHhhCCCchhHHHHhcCChHHHHHHhcccCCCCc
Q 001833 527 AEMELTDHHKASLLEGNVLGPLLHLVSRGDIQMKKVA-----VKALRNLSSVPQNGLQMIKEGAVGPLVDLLLHHSSSSS 601 (1008)
Q Consensus 527 ~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~A-----~~aL~~L~~~~~~~~~i~~~G~v~~Ll~ll~~~~~~~~ 601 (1008)
+.+-.+|.. +.-.|++.++.+. .++..- ..+...|- .+|.+...+ ..|-|-..+.+.- .
T Consensus 215 yq~kr~dkm--------a~lklv~hf~~n~-smknq~a~V~lvr~~~~ll--~~n~q~~~q--~rpfL~~wls~k~---e 278 (898)
T COG5240 215 YQSKRTDKM--------AQLKLVEHFRGNA-SMKNQLAGVLLVRATVELL--KENSQALLQ--LRPFLNSWLSDKF---E 278 (898)
T ss_pred HHHhcccHH--------HHHHHHHHhhccc-ccccchhheehHHHHHHHH--HhChHHHHH--HHHHHHHHhcCcc---h
Confidence 876544422 2234555554432 122111 12222222 112222111 2344555555432 3
Q ss_pred chHHHHHHHHHHHhccccccccCCcccccccchhHHHHHHHhhccCChHHHHHHHHHHHHhccCCChhhHHHHhhhcCCh
Q 001833 602 SLREETATAIMHLAVSTMYQESSQTPVTLLESDKEIFMLFSLINLTGPNVQQRILQTFNALCRSPSAGNIKTTLTQCSAI 681 (1008)
Q Consensus 602 ~~~~~a~~~L~nLa~~~~~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~aL~~L~~~~~~~~~~~~i~e~~~i 681 (1008)
-+.-+++.++..++..+.+.+. + ...+..|-.+|++.....|-.|+++|..|+.... .. +. -+=
T Consensus 279 mV~lE~Ar~v~~~~~~nv~~~~-------~--~~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P-~k----v~--vcN 342 (898)
T COG5240 279 MVFLEAARAVCALSEENVGSQF-------V--DQTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYP-QK----VS--VCN 342 (898)
T ss_pred hhhHHHHHHHHHHHHhccCHHH-------H--HHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCC-ce----ee--ecC
Confidence 4677788888887765433221 1 2456667777888888899999999999986311 11 01 011
Q ss_pred HHHHHhhccCChhHHHHHHHHHHHhccCCChhHHHhhhcccchHHHHHHhcCCCCHHHHHHHHHHHhcCCC--Ch----h
Q 001833 682 PVLVQLCEHDNENVRANAVKLFCCLVDDGDEAIIREHVGQKCLETLVTIIQSSHNEEEIASAMGILSKLPE--VP----Q 755 (1008)
Q Consensus 682 ~~Lv~ll~~~~~~v~~~a~~~L~~Ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~v~~~a~~~L~nL~~--~~----~ 755 (1008)
+-+-.|+.+.+..+-..|+..| -+.|.++.+..++ ..++..+.=+.++- .-+...|++.|+.+-. .. -
T Consensus 343 ~evEsLIsd~Nr~IstyAITtL---LKTGt~e~idrLv--~~I~sfvhD~SD~F-KiI~ida~rsLsl~Fp~k~~s~l~F 416 (898)
T COG5240 343 KEVESLISDENRTISTYAITTL---LKTGTEETIDRLV--NLIPSFVHDMSDGF-KIIAIDALRSLSLLFPSKKLSYLDF 416 (898)
T ss_pred hhHHHHhhcccccchHHHHHHH---HHcCchhhHHHHH--HHHHHHHHhhccCc-eEEeHHHHHHHHhhCcHHHHHHHHH
Confidence 2233444555555544444433 3334444444333 12333333232221 1233455555555432 11 1
Q ss_pred hHHHHHhcCCH-------HHHHHHhhCCCCCCCchhhHHHHHHHHHHHhcCCCCHHHHHHH-------HHcC--------
Q 001833 756 FTQWLLDAGAL-------PIVLNFLKNGRQNDPNRFQVVENAVGALRRFTAPTNLEWQKRA-------AEAG-------- 813 (1008)
Q Consensus 756 ~~~~l~~~g~l-------~~Lv~lL~~~~~~~~~~~~v~~~a~~aL~~L~~~~~~~~~~~l-------~~~g-------- 813 (1008)
....+.+.|++ ..+...+.. .++.+|.|+..||.+..+ .++-+.. .+.|
T Consensus 417 L~~~L~~eGg~eFK~~~Vdaisd~~~~-------~p~skEraLe~LC~fIED--cey~~I~vrIL~iLG~EgP~a~~P~~ 487 (898)
T COG5240 417 LGSSLLQEGGLEFKKYMVDAISDAMEN-------DPDSKERALEVLCTFIED--CEYHQITVRILGILGREGPRAKTPGK 487 (898)
T ss_pred HHHHHHhcccchHHHHHHHHHHHHHhh-------CchHHHHHHHHHHHHHhh--cchhHHHHHHHHHhcccCCCCCCcch
Confidence 12345566654 344444443 567889999988888873 3332221 1111
Q ss_pred ChHHHHHHhhcCChHHHHHHHHHHhhhhhcCCCCCCCCCCCCcccccCCCCCCcccccCcccCcccchhHhhccchHHHH
Q 001833 814 VIPKLVQLLEYGTTLTKEHAATSLARFSKNSLGLSRPIPKRKGFWCFSPPPEIGCQVHGGLCGIESSFCLLEANAVRPLV 893 (1008)
Q Consensus 814 ~l~~Lv~lL~~~~~~v~~~Aa~aL~nLs~~~~~l~~~~~~~~g~~~~~~~~~~~c~vh~~~c~~~~~~~l~~~g~i~~Lv 893 (1008)
.+..+..-+--.+.-+|.+|..||..++.+.... .....+...|-
T Consensus 488 yvrhIyNR~iLEN~ivRsaAv~aLskf~ln~~d~-----------------------------------~~~~sv~~~lk 532 (898)
T COG5240 488 YVRHIYNRLILENNIVRSAAVQALSKFALNISDV-----------------------------------VSPQSVENALK 532 (898)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhccCcccc-----------------------------------ccHHHHHHHHH
Confidence 1222222222346679999999999988543220 01223456677
Q ss_pred HhhcCCChhhhHHHHHHHHhhh
Q 001833 894 RVLEDPDHGACEASLDALVTLI 915 (1008)
Q Consensus 894 ~lL~~~d~~v~~~al~aL~~L~ 915 (1008)
+++.+.|.+||..|..+|.++-
T Consensus 533 RclnD~DdeVRdrAsf~l~~~~ 554 (898)
T COG5240 533 RCLNDQDDEVRDRASFLLRNMR 554 (898)
T ss_pred HHhhcccHHHHHHHHHHHHhhh
Confidence 8999999999999999999987
No 120
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.55 E-value=5.9e-05 Score=71.63 Aligned_cols=55 Identities=24% Similarity=0.468 Sum_probs=46.5
Q ss_pred CCccccccccccccCC--ceeccCcccccHHHHHHHHhcCCCCCCCcCccCCCCCCcc
Q 001833 262 PLQSFYCPITRDVMVD--PVETSSGQTFERSAIEKWFSDGNNLCPLTMTVLDTSILRP 317 (1008)
Q Consensus 262 ~~~~~~cpi~~~~m~d--pv~~~~g~t~~r~~i~~w~~~~~~~cp~~~~~l~~~~l~p 317 (1008)
+-.-|.||||++-+.. ||-+-|||-||+.||+.-++.++ .||.|+++++++.+.+
T Consensus 128 ~~~~~~CPiCl~~~sek~~vsTkCGHvFC~~Cik~alk~~~-~CP~C~kkIt~k~~~r 184 (187)
T KOG0320|consen 128 KEGTYKCPICLDSVSEKVPVSTKCGHVFCSQCIKDALKNTN-KCPTCRKKITHKQFHR 184 (187)
T ss_pred cccccCCCceecchhhccccccccchhHHHHHHHHHHHhCC-CCCCcccccchhhhee
Confidence 3356999999999985 56678999999999999998766 5999999999887755
No 121
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.50 E-value=0.13 Score=59.63 Aligned_cols=367 Identities=16% Similarity=0.153 Sum_probs=189.9
Q ss_pred hHHHHHHHcCCCHHHHHHHHHHHHHhccCChhhHHHhhccCCcHHHHHHHhccC---hhHHHHHHHHHHHh-ccCchhhH
Q 001833 379 IPKLIYLLGSKNRDVRNRALIILHILVKDSNDTKERLANGDDAVESIVRSLGRR---IEERKLAVALLLEL-STCNTLRD 454 (1008)
Q Consensus 379 i~~L~~lL~s~~~~~~~~Al~~L~~Ls~~~~~~k~~i~~~~g~i~~Lv~~L~~~---~~~~~~A~~~L~~L-s~~~~~~~ 454 (1008)
+..+-.=|.|.|+-...-|+.++.++... ++++.+.. -+-++|.++ .-.++.|+-.|..| -+.|+...
T Consensus 113 in~iknDL~srn~~fv~LAL~~I~niG~r--e~~ea~~~------DI~KlLvS~~~~~~vkqkaALclL~L~r~spDl~~ 184 (938)
T KOG1077|consen 113 INSIKNDLSSRNPTFVCLALHCIANIGSR--EMAEAFAD------DIPKLLVSGSSMDYVKQKAALCLLRLFRKSPDLVN 184 (938)
T ss_pred HHHHHhhhhcCCcHHHHHHHHHHHhhccH--hHHHHhhh------hhHHHHhCCcchHHHHHHHHHHHHHHHhcCccccC
Confidence 33444456677888888899999886543 34444432 234666543 22344444444444 44555332
Q ss_pred HhhcccchHHHHHHHhcCCChHHHHHHHHHHHhhcCCcccHHHHHhcCcHHHHHHHHh-c------------CCHHHHHH
Q 001833 455 QIGDVQGCILLLVTMASSDDNQASRDAQELLENLSFSDDNVVQMAKANYFKHLLQRLS-A------------GPESVKMR 521 (1008)
Q Consensus 455 ~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~~~n~~~i~~~g~v~~Lv~~L~-~------------~~~~~~~~ 521 (1008)
. .+.+..++.+|...+..+...+...+--|+...+.--.-.-.-++..|..... . +.|=+...
T Consensus 185 ~----~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~~yk~~~~~avs~L~riv~~~~t~~qdYTyy~vP~PWL~vK 260 (938)
T KOG1077|consen 185 P----GEWAQRIVHLLDDQHMGVVTAATSLIEALVKKNPESYKTCLPLAVSRLSRIVVVVGTSLQDYTYYFVPAPWLQVK 260 (938)
T ss_pred h----hhHHHHHHHHhCccccceeeehHHHHHHHHHcCCHHHhhhHHHHHHHHHHHHhhcccchhhceeecCCChHHHHH
Confidence 2 46678889999877776666666666666643221111100111111211111 1 12334555
Q ss_pred HHHHHHHHcCCh--hhHHHHhhcCcHHHHHHHhccC----CH---HHHHHHHHHHHHhhC-CCchhHHHHhcCChHHHHH
Q 001833 522 MATTLAEMELTD--HHKASLLEGNVLGPLLHLVSRG----DI---QMKKVAVKALRNLSS-VPQNGLQMIKEGAVGPLVD 591 (1008)
Q Consensus 522 aa~~L~~Ls~~~--~~k~~i~~~g~i~~Lv~lL~~~----~~---~~~~~A~~aL~~L~~-~~~~~~~i~~~G~v~~Ll~ 591 (1008)
.+++|...-..+ ..|..+. .++..++...+.+ ++ .++...+--..+|.. .+.....+.+ .+..|-.
T Consensus 261 l~rlLq~~p~~~D~~~r~~l~--evl~~iLnk~~~~~~~k~vq~~na~naVLFeaI~l~~h~D~e~~ll~~--~~~~Lg~ 336 (938)
T KOG1077|consen 261 LLRLLQIYPTPEDPSTRARLN--EVLERILNKAQEPPKSKKVQHSNAKNAVLFEAISLAIHLDSEPELLSR--AVNQLGQ 336 (938)
T ss_pred HHHHHHhCCCCCCchHHHHHH--HHHHHHHhccccCccccchHhhhhHHHHHHHHHHHHHHcCCcHHHHHH--HHHHHHH
Confidence 566665552222 2232221 2333333333311 11 111222222224443 2333333333 4666777
Q ss_pred HhcccCCCCcchHHHHHHHHHHHhccccccccCCcccccccchhHHHHHHHhhc-cCChHHHHHHHHHHHHhccCCChhh
Q 001833 592 LLLHHSSSSSSLREETATAIMHLAVSTMYQESSQTPVTLLESDKEIFMLFSLIN-LTGPNVQQRILQTFNALCRSPSAGN 670 (1008)
Q Consensus 592 ll~~~~~~~~~~~~~a~~~L~nLa~~~~~~~~~~~~~~~l~~~~~i~~L~~ll~-~~~~~v~~~al~aL~~L~~~~~~~~ 670 (1008)
++.+.. +.++..|+..+..|+++....+. +.. -...++..|+ ..+..++..++..|+.+|.....+
T Consensus 337 fls~rE---~NiRYLaLEsm~~L~ss~~s~da-------vK~--h~d~Ii~sLkterDvSirrravDLLY~mcD~~Nak- 403 (938)
T KOG1077|consen 337 FLSHRE---TNIRYLALESMCKLASSEFSIDA-------VKK--HQDTIINSLKTERDVSIRRRAVDLLYAMCDVSNAK- 403 (938)
T ss_pred Hhhccc---ccchhhhHHHHHHHHhccchHHH-------HHH--HHHHHHHHhccccchHHHHHHHHHHHHHhchhhHH-
Confidence 776544 56888888888888886543321 221 2566777777 678899999999999999753222
Q ss_pred HHHHhhhcCChHHHHHhhccCChhHHHHHHHHHHHhccCCChhHHHhhhcccchHHHHHHhcCCCCHHHHHHHHHHHhcC
Q 001833 671 IKTTLTQCSAIPVLVQLCEHDNENVRANAVKLFCCLVDDGDEAIIREHVGQKCLETLVTIIQSSHNEEEIASAMGILSKL 750 (1008)
Q Consensus 671 ~~~~i~e~~~i~~Lv~ll~~~~~~v~~~a~~~L~~Ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~v~~~a~~~L~nL 750 (1008)
.++.-|++.+.+.+..+|+..+-=.+.|++..-.+.--.+ .++-.|+++-.+.-++++....+.++.|
T Consensus 404 --------~IV~elLqYL~tAd~sireeivlKvAILaEKyAtDy~WyV---dviLqLiriagd~vsdeVW~RvvQiVvN- 471 (938)
T KOG1077|consen 404 --------QIVAELLQYLETADYSIREEIVLKVAILAEKYATDYSWYV---DVILQLIRIAGDYVSDEVWYRVVQIVVN- 471 (938)
T ss_pred --------HHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhcCCcchhH---HHHHHHHHHhcccccHHHHHHhheeEec-
Confidence 2466778888888888888776666666632211111111 2344444444444445555554444433
Q ss_pred CCChhhHHHHHhcCCHHHHHHHhhCCCCCCCchhhHHHHHHHHHHHh
Q 001833 751 PEVPQFTQWLLDAGALPIVLNFLKNGRQNDPNRFQVVENAVGALRRF 797 (1008)
Q Consensus 751 ~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~v~~~a~~aL~~L 797 (1008)
+++. +.-+-..+..+|+.+. ..+.+.+.+...|+.+
T Consensus 472 --nedl-----q~yaak~~fe~Lq~~a----~hE~mVKvggyiLGEf 507 (938)
T KOG1077|consen 472 --NEDL-----QGYAAKRLFEYLQKPA----CHENMVKVGGYILGEF 507 (938)
T ss_pred --chhh-----hHHHHHHHHHHHhhhH----HHHHHHHhhhhhhhhh
Confidence 2221 1123455666666532 3445555555555443
No 122
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=97.49 E-value=5.2e-05 Score=56.67 Aligned_cols=40 Identities=35% Similarity=0.749 Sum_probs=33.3
Q ss_pred cccccccccC---CceeccCcccccHHHHHHHHhcCCCCCCCcC
Q 001833 267 YCPITRDVMV---DPVETSSGQTFERSAIEKWFSDGNNLCPLTM 307 (1008)
Q Consensus 267 ~cpi~~~~m~---dpv~~~~g~t~~r~~i~~w~~~~~~~cp~~~ 307 (1008)
.|||+++-|. .++.+++||.|.+.+|.+|+.. +.+||.++
T Consensus 2 ~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~-~~~CP~CR 44 (44)
T PF13639_consen 2 ECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKR-NNSCPVCR 44 (44)
T ss_dssp CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHH-SSB-TTTH
T ss_pred CCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHh-CCcCCccC
Confidence 4899999994 6777899999999999999987 45899874
No 123
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.49 E-value=8.1e-05 Score=76.51 Aligned_cols=56 Identities=25% Similarity=0.406 Sum_probs=48.4
Q ss_pred CCCCccccccccccccCCceeccCcccccHHHHHHHHhcCCCCCCCcCccCCCCCCc
Q 001833 260 LEPLQSFYCPITRDVMVDPVETSSGQTFERSAIEKWFSDGNNLCPLTMTVLDTSILR 316 (1008)
Q Consensus 260 ~~~~~~~~cpi~~~~m~dpv~~~~g~t~~r~~i~~w~~~~~~~cp~~~~~l~~~~l~ 316 (1008)
..|+..+.|-+|++-++||--++|||-||=+||.+|..+. ..||.|+++..+..++
T Consensus 234 ~i~~a~~kC~LCLe~~~~pSaTpCGHiFCWsCI~~w~~ek-~eCPlCR~~~~pskvi 289 (293)
T KOG0317|consen 234 SIPEATRKCSLCLENRSNPSATPCGHIFCWSCILEWCSEK-AECPLCREKFQPSKVI 289 (293)
T ss_pred cCCCCCCceEEEecCCCCCCcCcCcchHHHHHHHHHHccc-cCCCcccccCCCccee
Confidence 3356789999999999999999999999999999999764 3599999999876653
No 124
>PRK14707 hypothetical protein; Provisional
Probab=97.48 E-value=0.79 Score=59.85 Aligned_cols=585 Identities=14% Similarity=0.109 Sum_probs=259.3
Q ss_pred chHHHHHHHHHHHHHHhhchhhhhhHhhcCchHHHHHHHcCCCHHHHHHHHHHHHHhccCChhhHHHhhccCCcHHHHHH
Q 001833 348 EVEEVLHCLEQLQDLCQQRDQHREWVILENYIPKLIYLLGSKNRDVRNRALIILHILVKDSNDTKERLANGDDAVESIVR 427 (1008)
Q Consensus 348 ~~~~~~~al~~L~~l~~~~~~~r~~i~~~g~i~~L~~lL~s~~~~~~~~Al~~L~~Ls~~~~~~k~~i~~~~g~i~~Lv~ 427 (1008)
+......|...|...-.+++.-|.-+.-.|+-..|-.+-+-++......|+..|..=-.++++-++.+- ..++..++.
T Consensus 345 d~~~C~~Aa~~LA~rl~~d~~l~~~l~~q~~a~~lNalsKWp~~~~c~~aa~~LA~~l~~d~~l~~~~~--~Q~van~ln 422 (2710)
T PRK14707 345 DNPVCAAAVSALAERLVADPELRKDLEPQGVSSVLNALSKWPDTPVCAAAASALAEHVVDDLELRKGLD--PQGVSNALN 422 (2710)
T ss_pred CchhHHHHHHHHHHHhccCHhhhcccchhHHHHHHhhhhcCCCchHHHHHHHHHHHHhccChhhhhhcc--hhhHHHHHH
Confidence 344455555566555555555555555445444443443446666666666666543345546565554 466777778
Q ss_pred HhccCh--hHHHHHHHHH-HHhccCchhhHHhhcccchHHHHHHHhcCCChHHHHHHHHHH-HhhcCCcccHHHHHhcCc
Q 001833 428 SLGRRI--EERKLAVALL-LELSTCNTLRDQIGDVQGCILLLVTMASSDDNQASRDAQELL-ENLSFSDDNVVQMAKANY 503 (1008)
Q Consensus 428 ~L~~~~--~~~~~A~~~L-~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~aL-~~Ls~~~~n~~~i~~~g~ 503 (1008)
-|++-+ .....|+..| ..++.+.+.+..+-- .++...|-.+-+-+|...-..++..| ..|+...+-+..+--.++
T Consensus 423 alsKWPd~~~C~~aa~~lA~~la~d~~l~~~~~p-~~va~~LnalSKWPd~p~c~~aa~~La~~l~~~~~l~~a~~~q~~ 501 (2710)
T PRK14707 423 ALAKWPDLPICGQAVSALAGRLAHDTELCKALDP-INVTQALDALSKWPDTPICGQTASALAARLAHERRLRKALKPQEV 501 (2710)
T ss_pred HhhcCCcchhHHHHHHHHHHHHhccHHHHhhcCh-HHHHHHHHHhhcCCCChhHHHHHHHHHHHhcccHHHHhhcCHHHH
Confidence 887743 3444444444 457778888877753 33333333333345554444444444 344444443333322222
Q ss_pred HHHHHHHHhc-CCHHHHHH-HHHHHHHHcCChhhHHHHhhcCcHHHHHHHhccCCHHHHHHHHHHHHHhhCCCchhHHHH
Q 001833 504 FKHLLQRLSA-GPESVKMR-MATTLAEMELTDHHKASLLEGNVLGPLLHLVSRGDIQMKKVAVKALRNLSSVPQNGLQMI 581 (1008)
Q Consensus 504 v~~Lv~~L~~-~~~~~~~~-aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~~~~~~~i~ 581 (1008)
...| ..|+. ++...... +.++-+.+.....-...+...+....+-.+-+.++....+.++..|..+...........
T Consensus 502 ~~~L-~aLSK~Pd~~~c~~A~~~lA~rl~~~~~l~~~~~~~~~~~~lnalSKwp~s~~C~~A~~~iA~~l~~~~~~~~~L 580 (2710)
T PRK14707 502 VIAL-HSLSKWPDTPICAEAASALAERVVDELQLRKAFDAHQVVNTLKALSKWPDKQLCAVAASGLAERLADEPQLPKDL 580 (2710)
T ss_pred HHHH-HHhhcCCCcHHHHHHHHHHHHHhccchhhhhhhhhHHHHHHHHhhhcCCchhHHHHHHHHHHHHhhcchhhHHhh
Confidence 2222 23332 22222233 333333443222222222222222222233334444455556666666554333333334
Q ss_pred hcCChHHHHHHhcccCCCCcchHHHHHHHHHHHhccccccccCCcccccccchhHHHHHHHhhc-cCChHHHHHHHHHHH
Q 001833 582 KEGAVGPLVDLLLHHSSSSSSLREETATAIMHLAVSTMYQESSQTPVTLLESDKEIFMLFSLIN-LTGPNVQQRILQTFN 660 (1008)
Q Consensus 582 ~~G~v~~Ll~ll~~~~~~~~~~~~~a~~~L~nLa~~~~~~~~~~~~~~~l~~~~~i~~L~~ll~-~~~~~v~~~al~aL~ 660 (1008)
..-.|..+++.+..-.+. ....+.+.++-..+...+.-+. -+. ...+..++.-++ -+.....+.++..|.
T Consensus 581 ~aq~Vs~llNaLSKWP~~-~aC~~Aa~~LA~~l~~~~~lr~-------~l~-~q~lan~lNALSKWP~s~~C~~Aa~rLA 651 (2710)
T PRK14707 581 HRQGVVIVLNALSKWPDT-AVCAEAVNALAERLVDEPDLRK-------ELD-PVDVTNVLNALSKWPGTEVCAEVARLLA 651 (2710)
T ss_pred hhhHHHHHHHhhccCCCc-HHHHHHHHHHHHHhccChhhhh-------hcc-HHHHHHHHhhhhcCCCchHHHHHHHHHH
Confidence 455678888888765543 3334444444444433222211 121 223333333333 223333333333333
Q ss_pred H-hccCCChhhHHHHhhhcCChHHHHHhh-ccCChhHHHHHHHHHH-HhccCCChhHHHhhhcccchHHHHHHhcCCCCH
Q 001833 661 A-LCRSPSAGNIKTTLTQCSAIPVLVQLC-EHDNENVRANAVKLFC-CLVDDGDEAIIREHVGQKCLETLVTIIQSSHNE 737 (1008)
Q Consensus 661 ~-L~~~~~~~~~~~~i~e~~~i~~Lv~ll-~~~~~~v~~~a~~~L~-~Ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~ 737 (1008)
. +... ...+..+...+ +..++.-| +=++.+.-..|+..|. .|. . .+. ....+....+..+++-|+.=++.
T Consensus 652 ~rl~~~---~~l~~~fnaQ~-vAn~LNALSKWPe~e~Cr~Aa~~LA~rLa-~-~~~-Lr~al~pQ~vAN~LNALSKWP~~ 724 (2710)
T PRK14707 652 GRLVGD---RLLRKTFNSLD-VANALNALSKWPDTPVCAAAAGGMAERLA-A-DPG-LRKELNPVDVANALNALSKWPRT 724 (2710)
T ss_pred HHhhhc---hhhHhhcchHH-HHHHHHhhhcCCCchHHHHHHHHHHHHHh-c-Chh-hHhhcCHHHHHHHHhhhhcCCCc
Confidence 3 2221 12233333333 33333333 3334444444444443 333 1 222 22234444555555555544333
Q ss_pred HHHHHHHHHH-hcCCCChhhHHHHHhcCCHHHHHHHhhCCCCCCCchhhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChH
Q 001833 738 EEIASAMGIL-SKLPEVPQFTQWLLDAGALPIVLNFLKNGRQNDPNRFQVVENAVGALRRFTAPTNLEWQKRAAEAGVIP 816 (1008)
Q Consensus 738 ~v~~~a~~~L-~nL~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~v~~~a~~aL~~L~~~~~~~~~~~l~~~g~l~ 816 (1008)
+.-..|+..| ..|...+.....+ +...+...++.|..=. .++..+..+...-..+.. ++..++.+.-.++-.
T Consensus 725 ~~Cr~AA~~LA~rL~~~p~l~~a~-~aQevANaLNALSKWP----d~~~C~~AA~aLA~rLa~--~~~Lr~aL~pQ~vAn 797 (2710)
T PRK14707 725 PVCAAVASALAARVVAEPRLRKAF-DAQQVATALNALSKWP----DNQACAAAANTLAERQLR--EPDVRDVLKPREMTN 797 (2710)
T ss_pred HHHHHHHHHHHHHHhcChhhhhhc-CHHHHHHHHHHhhcCC----CchHHHHHHHHHHHHHhh--CcchhhhcCHHHHHH
Confidence 3333333322 2233333333322 2223333333333210 122333333333334444 455555443333223
Q ss_pred HHHHHhhcCChHHHHHHHHHHhhhhhcCCCCCCCCCCCCcccccCCCCCCcccccCcccCcccchhHhhccchHHHHHhh
Q 001833 817 KLVQLLEYGTTLTKEHAATSLARFSKNSLGLSRPIPKRKGFWCFSPPPEIGCQVHGGLCGIESSFCLLEANAVRPLVRVL 896 (1008)
Q Consensus 817 ~Lv~lL~~~~~~v~~~Aa~aL~nLs~~~~~l~~~~~~~~g~~~~~~~~~~~c~vh~~~c~~~~~~~l~~~g~i~~Lv~lL 896 (1008)
.|-.+-+-++....+.|+.+|..-....+.+.+. .++-.|.-.+.-|
T Consensus 798 ~LNALSKWPe~~~Cr~AA~~LA~rLa~dp~Lr~a---------------------------------f~AQ~VANaLNAL 844 (2710)
T PRK14707 798 ALNALSKWPDTPACAAAASALAARVADDPRLREA---------------------------------FDVQHVATVLNAM 844 (2710)
T ss_pred HHHHhhcCCCchHHHHHHHHHHHHHhcChhHHHh---------------------------------cCHHHHHHHHHHh
Confidence 2322223355566666776666544333222211 1222244444444
Q ss_pred c-CCChhhhHHHHHHHHhhh-cccccchhhHHHHhcCchHHHHHHhcCCChH-HHHHHHHHHHHHhcChHHHHHhccccC
Q 001833 897 E-DPDHGACEASLDALVTLI-EGERLQNGSKVLEDANAIDRMVRFLSSPSPK-LQEKALDSVERIFRLPEFKQKYGKSAQ 973 (1008)
Q Consensus 897 ~-~~d~~v~~~al~aL~~L~-~~~~~~~~~~~i~~~~~i~~l~~ll~~~~~~-l~~~a~~~L~~l~~~~~~~~~~~~~~~ 973 (1008)
. =++...+..|..+|..-+ ... ..+..+...+.-..|-.+.+.++.. -+..|..+-.++....+.++.+..-..
T Consensus 845 SKWPd~~~Cr~AA~aLA~RLa~e~---~LR~aL~~QevantLNALSKWPd~~~C~~AA~aLA~rL~~d~~Lrqal~aQ~V 921 (2710)
T PRK14707 845 SKWPDNAVCAAAAGAMAERLADEP---ELRHTLTAHGVVIVLNALSKWPNVPVCAAAASALAERLADEPELRKALSAHRV 921 (2710)
T ss_pred ccCCCchHHHHHHHHHHHHHhcCh---hhhhccchHHHHHHHhhhccCCCcHHHHHHHHHHHHHHhcCHHHHhhccHHHH
Confidence 3 366677888888888776 221 3344443333333344444666544 555555566677777777776653333
Q ss_pred chhhhhccc-CCchhhHHHHHHH
Q 001833 974 MPLVDLTQR-GNSSMKSLSARVL 995 (1008)
Q Consensus 974 ~~Lv~l~~~-~~~~~~~~Aa~~L 995 (1008)
...++.+.. .+...-+.|+..|
T Consensus 922 AN~LNALSKWPd~~~Cr~Aa~aL 944 (2710)
T PRK14707 922 ATALNALSKWPDIPVCATAASAL 944 (2710)
T ss_pred HHHHhhhccCCCchHHHHHHHHH
Confidence 334443333 3333333443333
No 125
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=97.46 E-value=0.021 Score=66.31 Aligned_cols=265 Identities=17% Similarity=0.164 Sum_probs=171.3
Q ss_pred HHHHHHhccCchhhHHhhcccchHHHHHHHh----------cCCChHHHHHHHHHHHhhcC-CcccHHHHHhcCcHHHHH
Q 001833 440 VALLLELSTCNTLRDQIGDVQGCILLLVTMA----------SSDDNQASRDAQELLENLSF-SDDNVVQMAKANYFKHLL 508 (1008)
Q Consensus 440 ~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL----------~~~~~~~~~~a~~aL~~Ls~-~~~n~~~i~~~g~v~~Lv 508 (1008)
..+|+-|++++.....+.. ..++..|..+- ...++.+...|+++|.|+.. ++..+...++.|+.+.++
T Consensus 2 L~~LRiLsRd~~~~~~l~~-~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~ 80 (446)
T PF10165_consen 2 LETLRILSRDPTGLDPLFT-EEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLC 80 (446)
T ss_pred HHHHHHHccCcccchhhcc-HHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHH
Confidence 4466677777777777765 45566666665 24578899999999999986 555688888999999999
Q ss_pred HHHhcC-----CHHHHHHHHHHHHHHc-CChhhHHHHhh-cCcHHHHHHHhcc-----------------CCHHHHHHHH
Q 001833 509 QRLSAG-----PESVKMRMATTLAEME-LTDHHKASLLE-GNVLGPLLHLVSR-----------------GDIQMKKVAV 564 (1008)
Q Consensus 509 ~~L~~~-----~~~~~~~aa~~L~~Ls-~~~~~k~~i~~-~g~i~~Lv~lL~~-----------------~~~~~~~~A~ 564 (1008)
..|+.. +.+......++|+-+. .....+..+.+ .+++..++..|.. .+......++
T Consensus 81 ~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiL 160 (446)
T PF10165_consen 81 ERLKNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEIL 160 (446)
T ss_pred HHHHcccccCCChhHHHHHHHHHHHHhcCChhHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHH
Confidence 999987 7888888999998884 45566666654 4677777765531 0223456778
Q ss_pred HHHHHhhCCCchhHHHHhcCChHHHHHHhccc---C---CCCcchHHHHHHHHHHHhcccccc----cc-CCcccccccc
Q 001833 565 KALRNLSSVPQNGLQMIKEGAVGPLVDLLLHH---S---SSSSSLREETATAIMHLAVSTMYQ----ES-SQTPVTLLES 633 (1008)
Q Consensus 565 ~aL~~L~~~~~~~~~i~~~G~v~~Ll~ll~~~---~---~~~~~~~~~a~~~L~nLa~~~~~~----~~-~~~~~~~l~~ 633 (1008)
+.++|+..+......-...+.++.++.++..- . ........++..+|.|+--..... .. ......-...
T Consensus 161 KllFNit~~~~~~~~~~~~~~~~~l~~il~~~l~~~~~~~~l~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~~~ 240 (446)
T PF10165_consen 161 KLLFNITLHYPKSVPEEFSPSIPHLVSILRRLLPPPPSSPPLDPPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEGDN 240 (446)
T ss_pred HHHHHhhhccCcccchhhhHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHhCCChHHHhhhhcccCCcccccCCCCC
Confidence 89999975332222222334566666655432 1 112345677778887773211000 00 0000011233
Q ss_pred hhHHHHHHHhhcc-----C---ChHHHHHHHHHHHHhccCCChhhHHHHhhh----------------cCChHHHHHhhc
Q 001833 634 DKEIFMLFSLINL-----T---GPNVQQRILQTFNALCRSPSAGNIKTTLTQ----------------CSAIPVLVQLCE 689 (1008)
Q Consensus 634 ~~~i~~L~~ll~~-----~---~~~v~~~al~aL~~L~~~~~~~~~~~~i~e----------------~~~i~~Lv~ll~ 689 (1008)
...+..++.+|.. . -.+.....+.+|..++.. ...+|..++. ...-..|++++.
T Consensus 241 ~~~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~~~--~~~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrLmt 318 (446)
T PF10165_consen 241 MDVVERLLDFLDKRLDKYEALKLDELLTPLLTLLTRLARA--AREVRKYLRARLLPPDKDRKKPPEKGDTLRSRLLRLMT 318 (446)
T ss_pred hHHHHHHHHHHHHHHHhcCcccchhhHhhHHHHHHHHHHh--cHHHHHHHHHHhCCChhhcccCCCCCcchHHHHHHHhC
Confidence 4566777777662 1 124555677778888775 2555555553 233567999999
Q ss_pred cCChhHHHHHHHHHHHhc
Q 001833 690 HDNENVRANAVKLFCCLV 707 (1008)
Q Consensus 690 ~~~~~v~~~a~~~L~~Ls 707 (1008)
+..+.++..+..+|..|+
T Consensus 319 ~~~~~~k~~vaellf~Lc 336 (446)
T PF10165_consen 319 SPDPQLKDAVAELLFVLC 336 (446)
T ss_pred CCCchHHHHHHHHHHHHH
Confidence 999999999999999998
No 126
>PF05659 RPW8: Arabidopsis broad-spectrum mildew resistance protein RPW8; InterPro: IPR008808 This entry represents the RPW8 domain found in several broad-spectrum mildew resistance proteins from Arabidopsis thaliana and other dicots. Plant disease resistance (R) genes control the recognition of specific pathogens and activate subsequent defence responses. The R protein-mediated defences typically involve a rapid, localized necrosis, or hypersensitive response (HR), at the site of infection, and the localised formation of antimicrobial chemicals and proteins that restrict growth of the pathogen. The A. thaliana locus Resistance to Powdery Mildew 8 (RPW8) contains two naturally polymorphic, dominant R genes: RPW8.1 and RPW8.2, which individually control resistance to a broad range of powdery mildew pathogens. They induce localised, salicylic acid-dependent defences similar to those induced by R genes that control specific resistance. Apparently, broad-spectrum resistance mediated by RPW8 uses the same mechanisms as specific resistance [, ]. RPW8.1 and RPW8.2 share similarity with an ~150 amino acid module forming the N terminus of a group of disease resistance proteins, which have a nucleotide-binding site (NBS) and leucine-rich repeats (LRRs) [, ]. The RPW8 domain sequences contain a predicted N-terminal transmembrane (TM) region or possibly a signal peptide, and a coiled-coil (CC) motif [].
Probab=97.45 E-value=0.0014 Score=62.87 Aligned_cols=110 Identities=23% Similarity=0.346 Sum_probs=85.4
Q ss_pred cCcHHHHHHHHHHHHHHHHHhcCCcccchhhHHHHHHHHHhHHHHHHHHhcCCCCCcHhHHHHHHHHHHHHHHHHHHHHH
Q 001833 12 TVPASEALSQIVEAILEVMIASNNVLIKKESFKELAAYLERIVPVLKELNKRDLSHSEGLNSAIEILNREIKGAKELTTE 91 (1008)
Q Consensus 12 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~r~~~ll~~lleel~~~~~~~~~~~~~~l~~L~~~l~~a~~Ll~~ 91 (1008)
|+++++|+..+++.+.... ..|..+.+|..-++.|.|+++||...+..++.....-++.|...|++++.|++.
T Consensus 12 G~~~~eLlk~v~~~~~k~~-------~fk~~l~~L~sTl~~i~P~i~eI~~~~~eld~~~~ee~e~L~~~L~~g~~LV~k 84 (147)
T PF05659_consen 12 GAVFGELLKAVIDASKKSL-------SFKSILKRLESTLESIIPIIKEIDKLNVELDRPRQEEIERLKELLEKGKELVEK 84 (147)
T ss_pred HHHHHHHHHHHHHHHHHHH-------hhhhHHHHHHHHHHHhhhHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHHHH
Confidence 4556666666555554332 336677889999999999999998877655555578899999999999999999
Q ss_pred hhhhhhHHHHhhhHHHHHHHHHHHHHHHHHhc-cCCCCc
Q 001833 92 CSKRNKVYLLMNCRAIVKRLKDTAREISQALG-ILPLAS 129 (1008)
Q Consensus 92 c~~~Skl~l~~~~~~~~~~~~~~~~~~~~~l~-~~p~~~ 129 (1008)
|++.+ -|=++....+..+++++-.+|.+.++ .+|...
T Consensus 85 ~sk~~-r~n~~kk~~y~~Ki~~le~~l~~f~~v~~q~~~ 122 (147)
T PF05659_consen 85 CSKVR-RWNLYKKPRYARKIEELEESLRRFIQVDLQLHQ 122 (147)
T ss_pred hcccc-HHHHHhhHhHHHHHHHHHHHHHHHhcchhHHHH
Confidence 99876 45566888899999999999999997 356433
No 127
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=97.43 E-value=0.00013 Score=52.65 Aligned_cols=39 Identities=49% Similarity=0.988 Sum_probs=35.6
Q ss_pred ccccccccCCceeccCcccccHHHHHHHHhcCCCCCCCc
Q 001833 268 CPITRDVMVDPVETSSGQTFERSAIEKWFSDGNNLCPLT 306 (1008)
Q Consensus 268 cpi~~~~m~dpv~~~~g~t~~r~~i~~w~~~~~~~cp~~ 306 (1008)
|||+++...+|+++.+||.|+..++.+|+..+...||.+
T Consensus 1 C~iC~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 1 CPICLEELKDPVVLPCGHTFCRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCcCccCCCCcEEecCCChHHHHHHHHHHHhCcCCCCCC
Confidence 899999999999999999999999999998667789864
No 128
>KOG2734 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.42 E-value=0.023 Score=62.21 Aligned_cols=242 Identities=16% Similarity=0.182 Sum_probs=166.4
Q ss_pred HHHHHHHHhhcCCcccHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHHcCCh------hhH----HHHhhcCcHHHH
Q 001833 479 RDAQELLENLSFSDDNVVQMAKANYFKHLLQRLSAGPESVKMRMATTLAEMELTD------HHK----ASLLEGNVLGPL 548 (1008)
Q Consensus 479 ~~a~~aL~~Ls~~~~n~~~i~~~g~v~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~~------~~k----~~i~~~g~i~~L 548 (1008)
...+.-+.-++..++--..+++..+|+.|+++|.+.+.++....+..|..|...| ++. .++++.++++.|
T Consensus 102 hd~IQ~mhvlAt~PdLYp~lveln~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLL 181 (536)
T KOG2734|consen 102 HDIIQEMHVLATMPDLYPILVELNAVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALL 181 (536)
T ss_pred HHHHHHHHhhhcChHHHHHHHHhccHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHH
Confidence 3445556666788888888999999999999999999999999999998884322 222 356677889999
Q ss_pred HHHhccCCHH------HHHHHHHHHHHhhC-CCchhHHHHhcCChHHHHHHhcccCCCCcchHHHHHHHHHHHhcccccc
Q 001833 549 LHLVSRGDIQ------MKKVAVKALRNLSS-VPQNGLQMIKEGAVGPLVDLLLHHSSSSSSLREETATAIMHLAVSTMYQ 621 (1008)
Q Consensus 549 v~lL~~~~~~------~~~~A~~aL~~L~~-~~~~~~~i~~~G~v~~Ll~ll~~~~~~~~~~~~~a~~~L~nLa~~~~~~ 621 (1008)
++-+..-+.. ...++++.+-|+.. .+..+..+++.|.+.-|+.-+.....- ...+..|..+|+-+..++...
T Consensus 182 vqnveRLdEsvkeea~gv~~~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f-~aNk~YasEiLaillq~s~e~ 260 (536)
T KOG2734|consen 182 VQNVERLDESVKEEADGVHNTLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAF-DANKQYASEILAILLQNSDEN 260 (536)
T ss_pred HHHHHHhhhcchhhhhhhHHHHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCc-chhHHHHHHHHHHHhccCchh
Confidence 9887654443 44566777888875 667788888889888888865543322 456889999999998766543
Q ss_pred ccCCcccccccchhHHHHHHHhhc---cCC---h---HHHHHHHHHHHHhccCCChhhHHHHhhhcCChHHHHHhhccCC
Q 001833 622 ESSQTPVTLLESDKEIFMLFSLIN---LTG---P---NVQQRILQTFNALCRSPSAGNIKTTLTQCSAIPVLVQLCEHDN 692 (1008)
Q Consensus 622 ~~~~~~~~~l~~~~~i~~L~~ll~---~~~---~---~v~~~al~aL~~L~~~~~~~~~~~~i~e~~~i~~Lv~ll~~~~ 692 (1008)
. ..+..-+++..+++-+. ..+ + +.-++...+|+.+... +..+..+....++....-+++. .
T Consensus 261 ~------~~~~~l~GiD~lL~~la~yk~~dP~~~~E~EmmeNLFdcLCs~lm~---~~nr~~Fl~~EGlqLm~Lmlr~-K 330 (536)
T KOG2734|consen 261 R------KLLGPLDGIDVLLRQLAVYKRHDPATVDEEEMMENLFDCLCSLLMA---PANRERFLKGEGLQLMNLMLRE-K 330 (536)
T ss_pred h------hhhcCcccHHHHHhhcchhhccCCCCcCHHHHHHHHHHHHHHHhcC---hhhhhhhhccccHHHHHHHHHH-H
Confidence 3 25666677877777665 223 2 3445555666655553 4556667777777766666665 5
Q ss_pred hhHHHHHHHHHHHhccCCCh--hHHHhhhcccchHHHHHHhc
Q 001833 693 ENVRANAVKLFCCLVDDGDE--AIIREHVGQKCLETLVTIIQ 732 (1008)
Q Consensus 693 ~~v~~~a~~~L~~Ls~~~~~--~~~~~~~~~~~i~~Lv~lL~ 732 (1008)
...+..++++|-... .+++ ..+..+++..++..+..+..
T Consensus 331 k~sr~SalkvLd~am-~g~~gt~~C~kfVe~lGLrtiF~~FM 371 (536)
T KOG2734|consen 331 KVSRGSALKVLDHAM-FGPEGTPNCNKFVEILGLRTIFPLFM 371 (536)
T ss_pred HHhhhhHHHHHHHHH-hCCCchHHHHHHHHHHhHHHHHHHHh
Confidence 567788899998876 3333 45555555555555554443
No 129
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.35 E-value=0.079 Score=61.34 Aligned_cols=345 Identities=14% Similarity=0.134 Sum_probs=200.9
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHhhCCCchhHHHHhcCChHHHHHHhcccCCCCcchHHHHHHHHHHHhccccccccCCc
Q 001833 547 PLLHLVSRGDIQMKKVAVKALRNLSSVPQNGLQMIKEGAVGPLVDLLLHHSSSSSSLREETATAIMHLAVSTMYQESSQT 626 (1008)
Q Consensus 547 ~Lv~lL~~~~~~~~~~A~~aL~~L~~~~~~~~~i~~~G~v~~Ll~ll~~~~~~~~~~~~~a~~~L~nLa~~~~~~~~~~~ 626 (1008)
.+-.=|.+.++.....|+.++.|+.. .+++..+ -+-+-.+|.+++.. +-++..|+-+|..|-...+.
T Consensus 115 ~iknDL~srn~~fv~LAL~~I~niG~-re~~ea~-----~~DI~KlLvS~~~~-~~vkqkaALclL~L~r~spD------ 181 (938)
T KOG1077|consen 115 SIKNDLSSRNPTFVCLALHCIANIGS-REMAEAF-----ADDIPKLLVSGSSM-DYVKQKAALCLLRLFRKSPD------ 181 (938)
T ss_pred HHHhhhhcCCcHHHHHHHHHHHhhcc-HhHHHHh-----hhhhHHHHhCCcch-HHHHHHHHHHHHHHHhcCcc------
Confidence 33344556778888889999988853 1222222 22333667666554 56777777777777654332
Q ss_pred ccccccchhHHHHHHHhhccCChHHHHHHHHHHHHhccCCChhhHHHHhhhcCChHHHHHhhc-------------cCCh
Q 001833 627 PVTLLESDKEIFMLFSLINLTGPNVQQRILQTFNALCRSPSAGNIKTTLTQCSAIPVLVQLCE-------------HDNE 693 (1008)
Q Consensus 627 ~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~aL~~L~~~~~~~~~~~~i~e~~~i~~Lv~ll~-------------~~~~ 693 (1008)
+..-.+-...++++|+..+-.+...+...+-.|+... .+..+..+. -++..|..++. -+.|
T Consensus 182 ---l~~~~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~-p~~yk~~~~--~avs~L~riv~~~~t~~qdYTyy~vP~P 255 (938)
T KOG1077|consen 182 ---LVNPGEWAQRIVHLLDDQHMGVVTAATSLIEALVKKN-PESYKTCLP--LAVSRLSRIVVVVGTSLQDYTYYFVPAP 255 (938)
T ss_pred ---ccChhhHHHHHHHHhCccccceeeehHHHHHHHHHcC-CHHHhhhHH--HHHHHHHHHHhhcccchhhceeecCCCh
Confidence 3334466788999998777777667777777776642 121111111 11233333322 1346
Q ss_pred hHHHHHHHHHHHhccCCChhHHHhhhcccchHHHHHHhcCCC---CH---HHHHH----HHHHHhcCCCChhhHHHHHhc
Q 001833 694 NVRANAVKLFCCLVDDGDEAIIREHVGQKCLETLVTIIQSSH---NE---EEIAS----AMGILSKLPEVPQFTQWLLDA 763 (1008)
Q Consensus 694 ~v~~~a~~~L~~Ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~---~~---~v~~~----a~~~L~nL~~~~~~~~~l~~~ 763 (1008)
-++...+++|.+.-...++....... .+++.++...+.+. +. ..+.+ |......+-.+++.. .
T Consensus 256 WL~vKl~rlLq~~p~~~D~~~r~~l~--evl~~iLnk~~~~~~~k~vq~~na~naVLFeaI~l~~h~D~e~~ll-----~ 328 (938)
T KOG1077|consen 256 WLQVKLLRLLQIYPTPEDPSTRARLN--EVLERILNKAQEPPKSKKVQHSNAKNAVLFEAISLAIHLDSEPELL-----S 328 (938)
T ss_pred HHHHHHHHHHHhCCCCCCchHHHHHH--HHHHHHHhccccCccccchHhhhhHHHHHHHHHHHHHHcCCcHHHH-----H
Confidence 77888888888885333333333322 34444544444221 11 11111 222222222233222 2
Q ss_pred CCHHHHHHHhhCCCCCCCchhhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHHHhh-cCChHHHHHHHHHHhhhhh
Q 001833 764 GALPIVLNFLKNGRQNDPNRFQVVENAVGALRRFTAPTNLEWQKRAAEAGVIPKLVQLLE-YGTTLTKEHAATSLARFSK 842 (1008)
Q Consensus 764 g~l~~Lv~lL~~~~~~~~~~~~v~~~a~~aL~~L~~~~~~~~~~~l~~~g~l~~Lv~lL~-~~~~~v~~~Aa~aL~nLs~ 842 (1008)
.++..|-.+|.+ ....+|.-++..++.|+. .+.....+..+ ...++..|+ ..|..+|+.|+..|..++
T Consensus 329 ~~~~~Lg~fls~------rE~NiRYLaLEsm~~L~s--s~~s~davK~h--~d~Ii~sLkterDvSirrravDLLY~mc- 397 (938)
T KOG1077|consen 329 RAVNQLGQFLSH------RETNIRYLALESMCKLAS--SEFSIDAVKKH--QDTIINSLKTERDVSIRRRAVDLLYAMC- 397 (938)
T ss_pred HHHHHHHHHhhc------ccccchhhhHHHHHHHHh--ccchHHHHHHH--HHHHHHHhccccchHHHHHHHHHHHHHh-
Confidence 356677888887 567889999999999998 45556666666 778888888 678899999999999887
Q ss_pred cCCCCCCCCCCCCcccccCCCCCCcccccCcccCcccchhHhhccchHHHHHhhcCCChhhhHHHHHHHHhhh--ccccc
Q 001833 843 NSLGLSRPIPKRKGFWCFSPPPEIGCQVHGGLCGIESSFCLLEANAVRPLVRVLEDPDHGACEASLDALVTLI--EGERL 920 (1008)
Q Consensus 843 ~~~~l~~~~~~~~g~~~~~~~~~~~c~vh~~~c~~~~~~~l~~~g~i~~Lv~lL~~~d~~v~~~al~aL~~L~--~~~~~ 920 (1008)
+.+++. .+|..|++.|...|+.+++...-=..-|. .+.+.
T Consensus 398 ---------------------------------D~~Nak-----~IV~elLqYL~tAd~sireeivlKvAILaEKyAtDy 439 (938)
T KOG1077|consen 398 ---------------------------------DVSNAK-----QIVAELLQYLETADYSIREEIVLKVAILAEKYATDY 439 (938)
T ss_pred ---------------------------------chhhHH-----HHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhcCCc
Confidence 333333 35788899999888887775443333333 11110
Q ss_pred chh----------hHHHHhcCchHHHHHHhcCCChHHHHHHHHHHHHHhcChHHHHH
Q 001833 921 QNG----------SKVLEDANAIDRMVRFLSSPSPKLQEKALDSVERIFRLPEFKQK 967 (1008)
Q Consensus 921 ~~~----------~~~i~~~~~i~~l~~ll~~~~~~l~~~a~~~L~~l~~~~~~~~~ 967 (1008)
.=+ ...+...+.+.++++++- .+++++.+|..-+..+++.+.+.+.
T Consensus 440 ~WyVdviLqLiriagd~vsdeVW~RvvQiVv-Nnedlq~yaak~~fe~Lq~~a~hE~ 495 (938)
T KOG1077|consen 440 SWYVDVILQLIRIAGDYVSDEVWYRVVQIVV-NNEDLQGYAAKRLFEYLQKPACHEN 495 (938)
T ss_pred chhHHHHHHHHHHhcccccHHHHHHhheeEe-cchhhhHHHHHHHHHHHhhhHHHHH
Confidence 001 112223345566666653 4678999999888888777655443
No 130
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.34 E-value=0.012 Score=69.11 Aligned_cols=409 Identities=15% Similarity=0.160 Sum_probs=222.7
Q ss_pred CchHHHHHHHcCCCHHHHHHHH-HHHHHhccCChhhHHHhhccCCcHHHHHHHhcc-ChhHHHHHHHHHHHhcc-Cchhh
Q 001833 377 NYIPKLIYLLGSKNRDVRNRAL-IILHILVKDSNDTKERLANGDDAVESIVRSLGR-RIEERKLAVALLLELST-CNTLR 453 (1008)
Q Consensus 377 g~i~~L~~lL~s~~~~~~~~Al-~~L~~Ls~~~~~~k~~i~~~~g~i~~Lv~~L~~-~~~~~~~A~~~L~~Ls~-~~~~~ 453 (1008)
|.++.+-.-+.+..+.-|..|+ +.+..+..+. +. .+..+.+++.... +.+..+..--.|.+-+. .|+.
T Consensus 13 ~ei~elks~l~s~~~~kr~~a~kkvIa~Mt~G~-Dv-------SslF~dvvk~~~T~dlelKKlvyLYl~nYa~~~P~~- 83 (734)
T KOG1061|consen 13 GEIPELKSQLNSQSKEKRKDAVKKVIAYMTVGK-DV-------SSLFPDVVKCMQTRDLELKKLVYLYLMNYAKGKPDL- 83 (734)
T ss_pred hhchHHHHHhhhhhhhhHHHHHHHHHhcCccCc-ch-------HhhhHHHHhhcccCCchHHHHHHHHHHHhhccCchH-
Confidence 4566666656555556677776 4666666664 21 2344455555533 33444433333443333 2221
Q ss_pred HHhhcccchHHHHHHHhcCCChHHHHHHHHHHHhhcCCcccHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHHcCCh
Q 001833 454 DQIGDVQGCILLLVTMASSDDNQASRDAQELLENLSFSDDNVVQMAKANYFKHLLQRLSAGPESVKMRMATTLAEMELTD 533 (1008)
Q Consensus 454 ~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~~~n~~~i~~~g~v~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~~ 533 (1008)
..+++..++.=..++++..+..|++.+..+-. ++ +-.-+..++...++++++.+|..++....++-.
T Consensus 84 -----a~~avnt~~kD~~d~np~iR~lAlrtm~~l~v--~~----i~ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~-- 150 (734)
T KOG1061|consen 84 -----AILAVNTFLKDCEDPNPLIRALALRTMGCLRV--DK----ITEYLCDPLLKCLKDDDPYVRKTAAVCVAKLFD-- 150 (734)
T ss_pred -----HHhhhhhhhccCCCCCHHHHHHHhhceeeEee--hH----HHHHHHHHHHHhccCCChhHHHHHHHHHHHhhc--
Confidence 12344444444456778887777766544411 11 122356788888999999999888888777633
Q ss_pred hhHHHHhhcCcHHHHHHHhccCCHHHHHHHHHHHHHhhCCCch-hHHHHhcCChHHHHHHhcccCCCCcchHHHHHHHHH
Q 001833 534 HHKASLLEGNVLGPLLHLVSRGDIQMKKVAVKALRNLSSVPQN-GLQMIKEGAVGPLVDLLLHHSSSSSSLREETATAIM 612 (1008)
Q Consensus 534 ~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~~~~-~~~i~~~G~v~~Ll~ll~~~~~~~~~~~~~a~~~L~ 612 (1008)
.+.....+.|.++.|-.++.+.+|.+..+|+.+|..+...+.+ ..-.+..-.+..++..+...+.+ .-..+|-
T Consensus 151 ~~~~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~~~~~~l~~~~~~~lL~al~ec~EW------~qi~IL~ 224 (734)
T KOG1061|consen 151 IDPDLVEDSGLVDALKDLLSDSNPMVVANALAALSEIHESHPSVNLLELNPQLINKLLEALNECTEW------GQIFILD 224 (734)
T ss_pred CChhhccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHHHHHhhhh------hHHHHHH
Confidence 3333456789999999999999999999999999999853322 11111111233444444333211 1223344
Q ss_pred HHhccccccccCCcccccccchhHHHHHHHhhccCChHHHHHHHHHHHHhccCCChhhHHHHhhhcCChHHHHHhhccCC
Q 001833 613 HLAVSTMYQESSQTPVTLLESDKEIFMLFSLINLTGPNVQQRILQTFNALCRSPSAGNIKTTLTQCSAIPVLVQLCEHDN 692 (1008)
Q Consensus 613 nLa~~~~~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~aL~~L~~~~~~~~~~~~i~e~~~i~~Lv~ll~~~~ 692 (1008)
+++..-.... ......+..+...+.+.++.+.-.++..+..+...- ......+. ....+.|+.++....
T Consensus 225 ~l~~y~p~d~--------~ea~~i~~r~~p~Lqh~n~avvlsavKv~l~~~~~~--~~~~~~~~-~K~~~pl~tlls~~~ 293 (734)
T KOG1061|consen 225 CLAEYVPKDS--------REAEDICERLTPRLQHANSAVVLSAVKVILQLVKYL--KQVNELLF-KKVAPPLVTLLSSES 293 (734)
T ss_pred HHHhcCCCCc--------hhHHHHHHHhhhhhccCCcceEeehHHHHHHHHHHH--HHHHHHHH-HHhcccceeeecccc
Confidence 4443221111 122345566666666777777777777777765531 11111111 224556666666655
Q ss_pred hhHHHHHHHHHHHhccCCCh----------------hHHH--------hhh-cccchHHHHHHhcCC--CCHHHHHHHHH
Q 001833 693 ENVRANAVKLFCCLVDDGDE----------------AIIR--------EHV-GQKCLETLVTIIQSS--HNEEEIASAMG 745 (1008)
Q Consensus 693 ~~v~~~a~~~L~~Ls~~~~~----------------~~~~--------~~~-~~~~i~~Lv~lL~~~--~~~~v~~~a~~ 745 (1008)
+++.-+++=+..+....+. -.+. ... ++..-+.+-++.... -+.+....+.+
T Consensus 294 -e~qyvaLrNi~lil~~~p~~~~~~~~~Ff~kynDPiYvK~eKleil~~la~~~nl~qvl~El~eYatevD~~fvrkaIr 372 (734)
T KOG1061|consen 294 -EIQYVALRNINLILQKRPEILKVEIKVFFCKYNDPIYVKLEKLEILIELANDANLAQVLAELKEYATEVDVDFVRKAVR 372 (734)
T ss_pred -hhhHHHHhhHHHHHHhChHHHHhHhHeeeeecCCchhhHHHHHHHHHHHhhHhHHHHHHHHHHHhhhhhCHHHHHHHHH
Confidence 5555444432222211111 0000 000 111111222222222 24566678999
Q ss_pred HHhcCCCChhhHHHHHhcCCHHHHHHHhhCCCCCCCchhhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHHHhhc-
Q 001833 746 ILSKLPEVPQFTQWLLDAGALPIVLNFLKNGRQNDPNRFQVVENAVGALRRFTAPTNLEWQKRAAEAGVIPKLVQLLEY- 824 (1008)
Q Consensus 746 ~L~nL~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~v~~~a~~aL~~L~~~~~~~~~~~l~~~g~l~~Lv~lL~~- 824 (1008)
++++++...+. ..+.++.++.+++. ....+...++..+..+.+. .|..-.. +++.+...+.+
T Consensus 373 aig~~aik~e~-----~~~cv~~lLell~~------~~~yvvqE~~vvi~dilRk-yP~~~~~-----vv~~l~~~~~sl 435 (734)
T KOG1061|consen 373 AIGRLAIKAEQ-----SNDCVSILLELLET------KVDYVVQEAIVVIRDILRK-YPNKYES-----VVAILCENLDSL 435 (734)
T ss_pred Hhhhhhhhhhh-----hhhhHHHHHHHHhh------cccceeeehhHHHHhhhhc-CCCchhh-----hhhhhccccccc
Confidence 99999862221 15789999999997 3445566777777777765 2332222 23444444443
Q ss_pred CChHHHHHHHHHHhhhhh
Q 001833 825 GTTLTKEHAATSLARFSK 842 (1008)
Q Consensus 825 ~~~~v~~~Aa~aL~nLs~ 842 (1008)
++|+.|.+-.|.++..+.
T Consensus 436 ~epeak~amiWilg~y~~ 453 (734)
T KOG1061|consen 436 QEPEAKAALIWILGEYAE 453 (734)
T ss_pred CChHHHHHHHHHHhhhhh
Confidence 578999999999998884
No 131
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=97.34 E-value=0.037 Score=57.00 Aligned_cols=199 Identities=17% Similarity=0.174 Sum_probs=133.5
Q ss_pred HHHHhcCcHHHHHHHHhcCC--HHHHHHHHHHHHHHcCChhhHHHHhhcCcHHHHHHHhccCCHHHHHHHHHHHHHhhCC
Q 001833 496 VQMAKANYFKHLLQRLSAGP--ESVKMRMATTLAEMELTDHHKASLLEGNVLGPLLHLVSRGDIQMKKVAVKALRNLSSV 573 (1008)
Q Consensus 496 ~~i~~~g~v~~Lv~~L~~~~--~~~~~~aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~ 573 (1008)
.++....+++.|+..|...+ +-+|..|+.+|+++ +..+..+.+-+..+++...+++.+..|+..+-..
T Consensus 61 gQ~~~~~Av~~l~~vl~desq~pmvRhEAaealga~----------~~~~~~~~l~k~~~dp~~~v~ETc~lAi~rle~~ 130 (289)
T KOG0567|consen 61 GQMQDEDAVPVLVEVLLDESQEPMVRHEAAEALGAI----------GDPESLEILTKYIKDPCKEVRETCELAIKRLEWK 130 (289)
T ss_pred hhhccchhhHHHHHHhcccccchHHHHHHHHHHHhh----------cchhhHHHHHHHhcCCccccchHHHHHHHHHHHh
Confidence 34556778999999987664 55788899999884 3455566777777777788888888888777421
Q ss_pred Cc-----hhHHH--------HhcCChHHHHHHhcccCCCCcchHHHHHHHHHHHhccccccccCCcccccccchhHHHHH
Q 001833 574 PQ-----NGLQM--------IKEGAVGPLVDLLLHHSSSSSSLREETATAIMHLAVSTMYQESSQTPVTLLESDKEIFML 640 (1008)
Q Consensus 574 ~~-----~~~~i--------~~~G~v~~Ll~ll~~~~~~~~~~~~~a~~~L~nLa~~~~~~~~~~~~~~~l~~~~~i~~L 640 (1008)
.. +.... ...+-+..|-..+.+.+.. ---+..|+..|.|+. .+.+|..|
T Consensus 131 ~~~~~~~~~~p~~SvdPa~p~~~ssv~~lr~~lld~t~~-l~~Ry~amF~LRn~g-----------------~EeaI~al 192 (289)
T KOG0567|consen 131 DIIDKIANSSPYISVDPAPPANLSSVHELRAELLDETKP-LFERYRAMFYLRNIG-----------------TEEAINAL 192 (289)
T ss_pred hccccccccCccccCCCCCccccccHHHHHHHHHhcchh-HHHHHhhhhHhhccC-----------------cHHHHHHH
Confidence 11 00000 1112255555555554432 233556677777663 36688888
Q ss_pred HHhhccCChHHHHHHHHHHHHhccCCChhhHHHHhhhcCChHHHHHhhccC--ChhHHHHHHHHHHHhccCCChhHHHhh
Q 001833 641 FSLINLTGPNVQQRILQTFNALCRSPSAGNIKTTLTQCSAIPVLVQLCEHD--NENVRANAVKLFCCLVDDGDEAIIREH 718 (1008)
Q Consensus 641 ~~ll~~~~~~v~~~al~aL~~L~~~~~~~~~~~~i~e~~~i~~Lv~ll~~~--~~~v~~~a~~~L~~Ls~~~~~~~~~~~ 718 (1008)
..-+...+.-.|..+..+|.+|-+. -+++.|.+.|... ++.+|..|+.+|..++
T Consensus 193 ~~~l~~~SalfrhEvAfVfGQl~s~-------------~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa----------- 248 (289)
T KOG0567|consen 193 IDGLADDSALFRHEVAFVFGQLQSP-------------AAIPSLIKVLLDETEHPMVRHEAAEALGAIA----------- 248 (289)
T ss_pred HHhcccchHHHHHHHHHHHhhccch-------------hhhHHHHHHHHhhhcchHHHHHHHHHHHhhc-----------
Confidence 8888888888999999999998542 3588888877664 7899999999999997
Q ss_pred hcccchHHHHHHhcCCCCHHHHHHHHHHHh
Q 001833 719 VGQKCLETLVTIIQSSHNEEEIASAMGILS 748 (1008)
Q Consensus 719 ~~~~~i~~Lv~lL~~~~~~~v~~~a~~~L~ 748 (1008)
+...++.|.+.+.+. ..-++..+.-+|.
T Consensus 249 -~e~~~~vL~e~~~D~-~~vv~esc~vald 276 (289)
T KOG0567|consen 249 -DEDCVEVLKEYLGDE-ERVVRESCEVALD 276 (289)
T ss_pred -CHHHHHHHHHHcCCc-HHHHHHHHHHHHH
Confidence 235667777777774 3334444444443
No 132
>KOG2734 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.33 E-value=0.034 Score=60.99 Aligned_cols=242 Identities=17% Similarity=0.226 Sum_probs=173.9
Q ss_pred hHhhcCchHHHHHHHcCCCHHHHHHHHHHHHHhccCCh-----h----hHHHhhccCCcHHHHHHHhcc-Ch------hH
Q 001833 372 WVILENYIPKLIYLLGSKNRDVRNRALIILHILVKDSN-----D----TKERLANGDDAVESIVRSLGR-RI------EE 435 (1008)
Q Consensus 372 ~i~~~g~i~~L~~lL~s~~~~~~~~Al~~L~~Ls~~~~-----~----~k~~i~~~~g~i~~Lv~~L~~-~~------~~ 435 (1008)
.+.+.++++.|+++|...|.++-...+..|..|+..+. + --..+++ .+.++.|+..+.+ +. ..
T Consensus 120 ~lveln~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvd-g~vlaLLvqnveRLdEsvkeea~g 198 (536)
T KOG2734|consen 120 ILVELNAVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVD-GQVLALLVQNVERLDESVKEEADG 198 (536)
T ss_pred HHHHhccHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHh-ccHHHHHHHHHHHhhhcchhhhhh
Confidence 45677889999999999999999999999999875431 2 2335566 7888889888865 21 12
Q ss_pred HHHHHHHHHHhcc-CchhhHHhhcccchHHHHHHHhcC--CChHHHHHHHHHHHhhcC-CcccHHHHHhcCcHHHHHHHH
Q 001833 436 RKLAVALLLELST-CNTLRDQIGDVQGCILLLVTMASS--DDNQASRDAQELLENLSF-SDDNVVQMAKANYFKHLLQRL 511 (1008)
Q Consensus 436 ~~~A~~~L~~Ls~-~~~~~~~i~~~~g~i~~Lv~lL~~--~~~~~~~~a~~aL~~Ls~-~~~n~~~i~~~g~v~~Lv~~L 511 (1008)
..++.+.+-++.. .++++..+.+ .|.+..|+.-+.. .-......|..+|.-+-. +++|+..+..-.++..+++-+
T Consensus 199 v~~~L~vveNlv~~r~~~~~~~~e-~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~~~~~~~l~GiD~lL~~l 277 (536)
T KOG2734|consen 199 VHNTLAVVENLVEVRPAICTEIVE-QGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDENRKLLGPLDGIDVLLRQL 277 (536)
T ss_pred hHHHHHHHHHHHhccHHHHHHHHH-hhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchhhhhhcCcccHHHHHhhc
Confidence 4567777778765 6678888877 5888887775553 344566777787777755 445888888899999998776
Q ss_pred hc----C-----CHHHHHHHHHHHHHHcCChhhHHHHhhcCcHHHHHHHhccCCHHHHHHHHHHHHHhhCCC---chhHH
Q 001833 512 SA----G-----PESVKMRMATTLAEMELTDHHKASLLEGNVLGPLLHLVSRGDIQMKKVAVKALRNLSSVP---QNGLQ 579 (1008)
Q Consensus 512 ~~----~-----~~~~~~~aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~~---~~~~~ 579 (1008)
.. + ..+.-++.-..|+.+-....+|..+....++....-+++. ....+..|+++|-....++ +||.+
T Consensus 278 a~yk~~dP~~~~E~EmmeNLFdcLCs~lm~~~nr~~Fl~~EGlqLm~Lmlr~-Kk~sr~SalkvLd~am~g~~gt~~C~k 356 (536)
T KOG2734|consen 278 AVYKRHDPATVDEEEMMENLFDCLCSLLMAPANRERFLKGEGLQLMNLMLRE-KKVSRGSALKVLDHAMFGPEGTPNCNK 356 (536)
T ss_pred chhhccCCCCcCHHHHHHHHHHHHHHHhcChhhhhhhhccccHHHHHHHHHH-HHHhhhhHHHHHHHHHhCCCchHHHHH
Confidence 31 1 2345667777788888889999999988888777766665 5567788899998887644 58899
Q ss_pred HHhcCChHHHHHHhcccCC-------CCcchHHHHHHHHHHHhc
Q 001833 580 MIKEGAVGPLVDLLLHHSS-------SSSSLREETATAIMHLAV 616 (1008)
Q Consensus 580 i~~~G~v~~Ll~ll~~~~~-------~~~~~~~~a~~~L~nLa~ 616 (1008)
+++.++...+..+....+. .....-++.+.+|+.+-.
T Consensus 357 fVe~lGLrtiF~~FMk~p~k~~~~~~t~~e~eEhv~siiaSl~~ 400 (536)
T KOG2734|consen 357 FVEILGLRTIFPLFMKTPLKRKKRKISADEHEEHVCSILASLLR 400 (536)
T ss_pred HHHHHhHHHHHHHHhhCccchhcccCcHHHHHHHHHHHHHHHHH
Confidence 9999888887776652111 113455666666666654
No 133
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=97.25 E-value=0.012 Score=61.59 Aligned_cols=259 Identities=14% Similarity=0.068 Sum_probs=162.8
Q ss_pred HhhccCChhHHHHHHHHHHHhccCCChhHHHhhhcccchHHHHHHhcCC-CCHHHHHHHHHHHhcCCCChhhHHHHHh-c
Q 001833 686 QLCEHDNENVRANAVKLFCCLVDDGDEAIIREHVGQKCLETLVTIIQSS-HNEEEIASAMGILSKLPEVPQFTQWLLD-A 763 (1008)
Q Consensus 686 ~ll~~~~~~v~~~a~~~L~~Ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~-~~~~v~~~a~~~L~nL~~~~~~~~~l~~-~ 763 (1008)
.+++.-++-.+.-|+.++.++... ....-....+...-.+++.++++. .+.+.|...+-+++.|+.+++..+.+-. .
T Consensus 156 kl~Q~i~~lTrlfav~cl~~l~~~-~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf~~~~aqdi~K~~ 234 (432)
T COG5231 156 KLSQLIDFLTRLFAVSCLSNLEFD-VEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTFSKECAQDIDKMD 234 (432)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhh-HHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 445555666788888999888622 222222234555677888888876 4567889999999999998877744332 2
Q ss_pred CCHHHHHHHhhCCCCCCCchhhHHHHHHHHHHHhcCCCCHHHHHHHH-HcCChHHHHHHhhc--CChHHHHHHHHHHhhh
Q 001833 764 GALPIVLNFLKNGRQNDPNRFQVVENAVGALRRFTAPTNLEWQKRAA-EAGVIPKLVQLLEY--GTTLTKEHAATSLARF 840 (1008)
Q Consensus 764 g~l~~Lv~lL~~~~~~~~~~~~v~~~a~~aL~~L~~~~~~~~~~~l~-~~g~l~~Lv~lL~~--~~~~v~~~Aa~aL~nL 840 (1008)
..+.-++++.+.. ....+-+-+++++.|++..........+. .+++.|..-.++.. .+.+++...-..=..+
T Consensus 235 dli~dli~iVk~~-----~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l 309 (432)
T COG5231 235 DLINDLIAIVKER-----AKEKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRL 309 (432)
T ss_pred HHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHhcccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHH
Confidence 3556677777763 45678888899999998742334444443 34455544444432 3566666555555555
Q ss_pred hhcCCCCCCCC----CCCCcccccCCCCCCcccccCcccC-cccchhHhhc--cchHHHHHhhcCCChh-hhHHHHHHHH
Q 001833 841 SKNSLGLSRPI----PKRKGFWCFSPPPEIGCQVHGGLCG-IESSFCLLEA--NAVRPLVRVLEDPDHG-ACEASLDALV 912 (1008)
Q Consensus 841 s~~~~~l~~~~----~~~~g~~~~~~~~~~~c~vh~~~c~-~~~~~~l~~~--g~i~~Lv~lL~~~d~~-v~~~al~aL~ 912 (1008)
..++..++..- .-..|.+|-+ |.|...-. ..+...+.+. .+++.|..+++..++. ...-|+.-+.
T Consensus 310 ~~~~k~l~~fD~Y~~ELdsg~l~wS-------p~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~ 382 (432)
T COG5231 310 VQNTKKLCIFDNYLNELDSGRLEWS-------PYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIF 382 (432)
T ss_pred HhhhhhhhHHHHHHHHHhhCcccCC-------CcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHH
Confidence 54444333210 0012222332 33321111 2233334442 5788899999877666 4445667777
Q ss_pred hhhcccccchhhHHHHhcCchHHHHHHhcCCChHHHHHHHHHHHHHh
Q 001833 913 TLIEGERLQNGSKVLEDANAIDRMVRFLSSPSPKLQEKALDSVERIF 959 (1008)
Q Consensus 913 ~L~~~~~~~~~~~~i~~~~~i~~l~~ll~~~~~~l~~~a~~~L~~l~ 959 (1008)
.++ ....++...+.+-||-+.|++++++++++++-.|+.++..+.
T Consensus 383 ~~V--r~~PE~~~vl~Kyg~k~~im~L~nh~d~~VkfeAl~a~q~~i 427 (432)
T COG5231 383 QLV--RASPEINAVLSKYGVKEIIMNLINHDDDDVKFEALQALQTCI 427 (432)
T ss_pred HHH--HhCchHHHHHHHhhhHHHHHHHhcCCCchhhHHHHHHHHHHH
Confidence 777 222478899999999999999999999999999999887654
No 134
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=97.23 E-value=0.0017 Score=72.16 Aligned_cols=289 Identities=13% Similarity=0.160 Sum_probs=184.1
Q ss_pred hHHHHhhcCcHHHHHHHhccCCHHHHHHHHHHHHHhhC-CCchhHHHHhcCChHHHHHHhcccCCCCcchHHHHHHHHHH
Q 001833 535 HKASLLEGNVLGPLLHLVSRGDIQMKKVAVKALRNLSS-VPQNGLQMIKEGAVGPLVDLLLHHSSSSSSLREETATAIMH 613 (1008)
Q Consensus 535 ~k~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~-~~~~~~~i~~~G~v~~Ll~ll~~~~~~~~~~~~~a~~~L~n 613 (1008)
-|..+.+..+.+.|+++|++++..+.--+..+++|+.- ...-+..+++.|.+..|+.++.+.. ..++.+..|+|++
T Consensus 423 LRTgL~d~~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sKD---daLqans~wvlrH 499 (743)
T COG5369 423 LRTGLLDYPIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSKD---DALQANSEWVLRH 499 (743)
T ss_pred HHhhccccchHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcch---hhhhhcchhhhhh
Confidence 45567778899999999999888888888999999884 5666888999999999999998653 4789999999999
Q ss_pred HhccccccccCCcccccccchhHHHHHHHhhccCChHHHHHHHHHHHHhccCCC-hhhHHHHhhhc----CChHHHHHhh
Q 001833 614 LAVSTMYQESSQTPVTLLESDKEIFMLFSLINLTGPNVQQRILQTFNALCRSPS-AGNIKTTLTQC----SAIPVLVQLC 688 (1008)
Q Consensus 614 La~~~~~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~aL~~L~~~~~-~~~~~~~i~e~----~~i~~Lv~ll 688 (1008)
+..+.+..+.. -+-...++..++.+.+.+.-.+|+.++..|.|++.+.. +++.++.+... -..+.|++.+
T Consensus 500 lmyncq~~ekf-----~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~ylfk~l~~k~ 574 (743)
T COG5369 500 LMYNCQKNEKF-----KFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRRYLFKRLIDKY 574 (743)
T ss_pred hhhcCcchhhh-----hhHHhcCHHHHHHHhcCcccccHHHHHHHHHhcccccccccccceeEEecChHHHHHHHHHHHH
Confidence 99877655330 12245677888999988889999999999999987432 23333333221 1345567777
Q ss_pred ccCChhHHHHHHHHHHHhccCCChhHHHhhhcc-cchHHHHHHh---------cCCC-CHHHHHHHHHHHhcCCCChhhH
Q 001833 689 EHDNENVRANAVKLFCCLVDDGDEAIIREHVGQ-KCLETLVTII---------QSSH-NEEEIASAMGILSKLPEVPQFT 757 (1008)
Q Consensus 689 ~~~~~~v~~~a~~~L~~Ls~~~~~~~~~~~~~~-~~i~~Lv~lL---------~~~~-~~~v~~~a~~~L~nL~~~~~~~ 757 (1008)
+..+|-.....+..|.+++ ..++.....+.+. ..+..+-.+| +.++ ...+-..-.-...++..+
T Consensus 575 e~~np~~i~~~~yilv~~a-a~d~~l~~~V~~q~~~L~~i~eil~e~a~r~~L~pg~~~~~v~~p~s~~~v~l~e~---- 649 (743)
T COG5369 575 EENNPMEILEGCYILVRNA-ACDDTLDYIVQSQEDMLDSIFEILDEFAGRTPLSPGSKEEHVLLPISYTIVNLSEN---- 649 (743)
T ss_pred HhcCchhhhhhHHHHHHHH-hccchHHHHHHhHHHHHHHHHHHHHHHcccCCCCCCCCcccccCccceeeeccccc----
Confidence 7777766666788888876 3333222222222 2222222222 1111 111111111122222221
Q ss_pred HHHHhcCCHHHHHHHhhC----CCCCCCchhhHHHHHHHHHHHhcCCC--------CHHHHHHHHHcCChHHHHHHhhcC
Q 001833 758 QWLLDAGALPIVLNFLKN----GRQNDPNRFQVVENAVGALRRFTAPT--------NLEWQKRAAEAGVIPKLVQLLEYG 825 (1008)
Q Consensus 758 ~~l~~~g~l~~Lv~lL~~----~~~~~~~~~~v~~~a~~aL~~L~~~~--------~~~~~~~l~~~g~l~~Lv~lL~~~ 825 (1008)
+|.....+..-.+ ..+....+.++-.+..|.+.|+.... +.+-.+.+...|+-..|+.+-.+.
T Consensus 650 -----~d~f~r~~~~~p~~D~~~~d~~~~NdE~~~agiw~~in~~w~~~~~~vtratveR~~iL~~~G~~e~l~k~q~~~ 724 (743)
T COG5369 650 -----SDKFKRLVLTTPHLDNMKKDSTTRNDELSIAGIWIIINLSWKEDGSEVTRATVERIQILCANGIREWLVKIQAKD 724 (743)
T ss_pred -----ccccccceecCCCccccccccCCCchhhhhccceEEEecccCccCCccchhhHHHHHHHHHccHHHHHHHHhccC
Confidence 1222111110000 11122245567777888888876541 224567788889888888888888
Q ss_pred ChHHHHHHHHHHhhhh
Q 001833 826 TTLTKEHAATSLARFS 841 (1008)
Q Consensus 826 ~~~v~~~Aa~aL~nLs 841 (1008)
++.|++.+-.+|.++-
T Consensus 725 Sl~vrek~~taL~~l~ 740 (743)
T COG5369 725 SLIVREKIGTALENLR 740 (743)
T ss_pred cHHHHHHHHHHHHhhh
Confidence 9999999999999874
No 135
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.15 E-value=0.0026 Score=72.61 Aligned_cols=253 Identities=15% Similarity=0.124 Sum_probs=160.4
Q ss_pred HHHhhccCChHHHHHHHHHHHHhccCCChhhHHHHhhhcCChHHHHHhhccCChhHHHHHHHHHHHhccCC--Chh--HH
Q 001833 640 LFSLINLTGPNVQQRILQTFNALCRSPSAGNIKTTLTQCSAIPVLVQLCEHDNENVRANAVKLFCCLVDDG--DEA--II 715 (1008)
Q Consensus 640 L~~ll~~~~~~v~~~al~aL~~L~~~~~~~~~~~~i~e~~~i~~Lv~ll~~~~~~v~~~a~~~L~~Ls~~~--~~~--~~ 715 (1008)
+..+....++.++..|+.+|..|...-.-.. -.....++++.+.+..+|.+|+.+++...... +.+ .-
T Consensus 203 l~~~~~~~D~~Vrt~A~eglL~L~eg~kL~~--------~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e~~ 274 (823)
T KOG2259|consen 203 LIYLEHDQDFRVRTHAVEGLLALSEGFKLSK--------ACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERESE 274 (823)
T ss_pred HHHHhcCCCcchHHHHHHHHHhhcccccccH--------HHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccchhh
Confidence 4444445678889999999998876321111 13566778999999999999988887776222 111 00
Q ss_pred HhhhcccchHHHHHHhcCCCCHHHHHHHHHHHhcCCC-ChhhHHHHHhcCCHHHHHHHhhCCCCCCCchhhHHHHHHHHH
Q 001833 716 REHVGQKCLETLVTIIQSSHNEEEIASAMGILSKLPE-VPQFTQWLLDAGALPIVLNFLKNGRQNDPNRFQVVENAVGAL 794 (1008)
Q Consensus 716 ~~~~~~~~i~~Lv~lL~~~~~~~v~~~a~~~L~nL~~-~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~v~~~a~~aL 794 (1008)
..-....+...+.+.+.+.+ ..++..|+..||.+-. +++....-.+...+..+..--. -.+..-...
T Consensus 275 e~kl~D~aF~~vC~~v~D~s-l~VRV~AaK~lG~~~~vSee~i~QTLdKKlms~lRRkr~-----------ahkrpk~l~ 342 (823)
T KOG2259|consen 275 EEKLKDAAFSSVCRAVRDRS-LSVRVEAAKALGEFEQVSEEIIQQTLDKKLMSRLRRKRT-----------AHKRPKALY 342 (823)
T ss_pred hhhhHHHHHHHHHHHHhcCc-eeeeehHHHHhchHHHhHHHHHHHHHHHHHhhhhhhhhh-----------cccchHHHH
Confidence 11112245666666776643 3577778888887765 5555444444333331111100 011111111
Q ss_pred HH--hcCCC----------CHHHHHHHHHcCChHHHHHHhhcCChHHHHHHHHHHhhhhhcCCCCCCCCCCCCcccccCC
Q 001833 795 RR--FTAPT----------NLEWQKRAAEAGVIPKLVQLLEYGTTLTKEHAATSLARFSKNSLGLSRPIPKRKGFWCFSP 862 (1008)
Q Consensus 795 ~~--L~~~~----------~~~~~~~l~~~g~l~~Lv~lL~~~~~~v~~~Aa~aL~nLs~~~~~l~~~~~~~~g~~~~~~ 862 (1008)
.+ ++.+. ..+....++.+|+-..++.-|.+.--+||++|...++.|+.++++.
T Consensus 343 s~GewSsGk~~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~F--------------- 407 (823)
T KOG2259|consen 343 SSGEWSSGKEWNADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSSPGF--------------- 407 (823)
T ss_pred hcCCcccCccccccCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCCCCc---------------
Confidence 11 11110 1112345677888889998888877799999999999999766542
Q ss_pred CCCCcccccCcccCcccchhHhhccchHHHHHhhcCCChhhhHHHHHHHHhhh-cccccchhhHHHHhcCchHHHHHHhc
Q 001833 863 PPEIGCQVHGGLCGIESSFCLLEANAVRPLVRVLEDPDHGACEASLDALVTLI-EGERLQNGSKVLEDANAIDRMVRFLS 941 (1008)
Q Consensus 863 ~~~~~c~vh~~~c~~~~~~~l~~~g~i~~Lv~lL~~~d~~v~~~al~aL~~L~-~~~~~~~~~~~i~~~~~i~~l~~ll~ 941 (1008)
...++.-|++++.+....||..|+.+|..+. .. -+...-++.+...+.
T Consensus 408 ----------------------A~~aldfLvDMfNDE~~~VRL~ai~aL~~Is~~l---------~i~eeql~~il~~L~ 456 (823)
T KOG2259|consen 408 ----------------------AVRALDFLVDMFNDEIEVVRLKAIFALTMISVHL---------AIREEQLRQILESLE 456 (823)
T ss_pred ----------------------HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHh---------eecHHHHHHHHHHHH
Confidence 1236788999999999999999999999988 32 123334677788888
Q ss_pred CCChHHHHHHHHHHHHH
Q 001833 942 SPSPKLQEKALDSVERI 958 (1008)
Q Consensus 942 ~~~~~l~~~a~~~L~~l 958 (1008)
+.++++++....+|.+.
T Consensus 457 D~s~dvRe~l~elL~~~ 473 (823)
T KOG2259|consen 457 DRSVDVREALRELLKNA 473 (823)
T ss_pred hcCHHHHHHHHHHHHhc
Confidence 88888888888877553
No 136
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.15 E-value=0.0033 Score=71.77 Aligned_cols=244 Identities=16% Similarity=0.182 Sum_probs=163.8
Q ss_pred cchHHHHHHHHHHHhccccccccCCcccccccchhHHHHHHHhhccCChHHHHHHHHHHHHhccC---CCh-hhHHHHhh
Q 001833 601 SSLREETATAIMHLAVSTMYQESSQTPVTLLESDKEIFMLFSLINLTGPNVQQRILQTFNALCRS---PSA-GNIKTTLT 676 (1008)
Q Consensus 601 ~~~~~~a~~~L~nLa~~~~~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~aL~~L~~~---~~~-~~~~~~i~ 676 (1008)
..++..|+..|..|.++..- +.-.....+..++..+.+++..|++.++-+..- +.. ......+.
T Consensus 212 ~~Vrt~A~eglL~L~eg~kL------------~~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e~~e~kl~ 279 (823)
T KOG2259|consen 212 FRVRTHAVEGLLALSEGFKL------------SKACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERESEEEKLK 279 (823)
T ss_pred cchHHHHHHHHHhhcccccc------------cHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccchhhhhhhH
Confidence 56778888888777652211 234566777888888899999887776665542 111 11111122
Q ss_pred hcCChHHHHHhhccCChhHHHHHHHHHHHhccCCChhHHHhhhcccchHHHHHHhcCCCCHHHHHHHHHHHhcC------
Q 001833 677 QCSAIPVLVQLCEHDNENVRANAVKLFCCLVDDGDEAIIREHVGQKCLETLVTIIQSSHNEEEIASAMGILSKL------ 750 (1008)
Q Consensus 677 e~~~i~~Lv~ll~~~~~~v~~~a~~~L~~Ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~v~~~a~~~L~nL------ 750 (1008)
+ .+...+.+.+.+.+-.+|..|+++|..+- ..+.+.+.+.++...+..+-+--..+.. .-....+.
T Consensus 280 D-~aF~~vC~~v~D~sl~VRV~AaK~lG~~~-~vSee~i~QTLdKKlms~lRRkr~ahkr------pk~l~s~GewSsGk 351 (823)
T KOG2259|consen 280 D-AAFSSVCRAVRDRSLSVRVEAAKALGEFE-QVSEEIIQQTLDKKLMSRLRRKRTAHKR------PKALYSSGEWSSGK 351 (823)
T ss_pred H-HHHHHHHHHHhcCceeeeehHHHHhchHH-HhHHHHHHHHHHHHHhhhhhhhhhcccc------hHHHHhcCCcccCc
Confidence 2 35677888888888999999999998886 5556666666665555533222111111 11112221
Q ss_pred ------CC--ChhhHHHHHhcCCHHHHHHHhhCCCCCCCchhhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHHHh
Q 001833 751 ------PE--VPQFTQWLLDAGALPIVLNFLKNGRQNDPNRFQVVENAVGALRRFTAPTNLEWQKRAAEAGVIPKLVQLL 822 (1008)
Q Consensus 751 ------~~--~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~v~~~a~~aL~~L~~~~~~~~~~~l~~~g~l~~Lv~lL 822 (1008)
++ .++....++..|+...++.-|.+ .=.++|++|+..++.|+.. .|.+... .+..|++++
T Consensus 352 ~~~advpsee~d~~~~siI~sGACGA~VhGlED------Ef~EVR~AAV~Sl~~La~s-sP~FA~~-----aldfLvDMf 419 (823)
T KOG2259|consen 352 EWNADVPSEEDDEEEESIIPSGACGALVHGLED------EFYEVRRAAVASLCSLATS-SPGFAVR-----ALDFLVDMF 419 (823)
T ss_pred cccccCchhhccccccccccccccceeeeechH------HHHHHHHHHHHHHHHHHcC-CCCcHHH-----HHHHHHHHh
Confidence 22 33445678889999999999998 6789999999999999986 5665433 467899999
Q ss_pred hcCChHHHHHHHHHHhhhhhcCCCCCCCCCCCCcccccCCCCCCcccccCcccCcccchhHhhccchHHHHHhhcCCChh
Q 001833 823 EYGTTLTKEHAATSLARFSKNSLGLSRPIPKRKGFWCFSPPPEIGCQVHGGLCGIESSFCLLEANAVRPLVRVLEDPDHG 902 (1008)
Q Consensus 823 ~~~~~~v~~~Aa~aL~nLs~~~~~l~~~~~~~~g~~~~~~~~~~~c~vh~~~c~~~~~~~l~~~g~i~~Lv~lL~~~d~~ 902 (1008)
++....||..|..+|..++.+- -++..-++.++..|.+.+.+
T Consensus 420 NDE~~~VRL~ai~aL~~Is~~l--------------------------------------~i~eeql~~il~~L~D~s~d 461 (823)
T KOG2259|consen 420 NDEIEVVRLKAIFALTMISVHL--------------------------------------AIREEQLRQILESLEDRSVD 461 (823)
T ss_pred ccHHHHHHHHHHHHHHHHHHHh--------------------------------------eecHHHHHHHHHHHHhcCHH
Confidence 9988899999999999998531 12334577778888888888
Q ss_pred hhHHHHHHHHhh
Q 001833 903 ACEASLDALVTL 914 (1008)
Q Consensus 903 v~~~al~aL~~L 914 (1008)
+|++.-..|.+.
T Consensus 462 vRe~l~elL~~~ 473 (823)
T KOG2259|consen 462 VREALRELLKNA 473 (823)
T ss_pred HHHHHHHHHHhc
Confidence 887666655554
No 137
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.15 E-value=0.0016 Score=57.09 Aligned_cols=86 Identities=21% Similarity=0.287 Sum_probs=70.7
Q ss_pred HHHHHHHh-cCCChHHHHHHHHHHHhhcCCcccHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHHcCChhhHHHHhh
Q 001833 463 ILLLVTMA-SSDDNQASRDAQELLENLSFSDDNVVQMAKANYFKHLLQRLSAGPESVKMRMATTLAEMELTDHHKASLLE 541 (1008)
Q Consensus 463 i~~Lv~lL-~~~~~~~~~~a~~aL~~Ls~~~~n~~~i~~~g~v~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~~~~k~~i~~ 541 (1008)
|+.|++.+ +++++.++..++.+|.++- ...+++.|+.+++++++.+|..++.+|+.+ +.
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~----------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i----------~~ 60 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELG----------DPEAIPALIELLKDEDPMVRRAAARALGRI----------GD 60 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCT----------HHHHHHHHHHHHTSSSHHHHHHHHHHHHCC----------HH
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcC----------CHhHHHHHHHHHcCCCHHHHHHHHHHHHHh----------CC
Confidence 57899988 7889999999999998551 235689999999999999999999999985 34
Q ss_pred cCcHHHHHHHhccC-CHHHHHHHHHHHH
Q 001833 542 GNVLGPLLHLVSRG-DIQMKKVAVKALR 568 (1008)
Q Consensus 542 ~g~i~~Lv~lL~~~-~~~~~~~A~~aL~ 568 (1008)
...++.|.+++.+. +..++..|+.+|+
T Consensus 61 ~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 61 PEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp HHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 56899999999875 5567888988874
No 138
>PHA02926 zinc finger-like protein; Provisional
Probab=97.14 E-value=0.00032 Score=69.36 Aligned_cols=50 Identities=20% Similarity=0.351 Sum_probs=41.1
Q ss_pred CCccccccccccccCC---------ceeccCcccccHHHHHHHHhcC-----CCCCCCcCccCC
Q 001833 262 PLQSFYCPITRDVMVD---------PVETSSGQTFERSAIEKWFSDG-----NNLCPLTMTVLD 311 (1008)
Q Consensus 262 ~~~~~~cpi~~~~m~d---------pv~~~~g~t~~r~~i~~w~~~~-----~~~cp~~~~~l~ 311 (1008)
..++..|+||+|...+ +++.+|||+||..||.+|.... ...||.|++++.
T Consensus 167 ~SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~ 230 (242)
T PHA02926 167 VSKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFR 230 (242)
T ss_pred ccCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceee
Confidence 3468899999998744 5777999999999999999642 456999999876
No 139
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.14 E-value=0.041 Score=64.11 Aligned_cols=353 Identities=14% Similarity=0.162 Sum_probs=203.4
Q ss_pred HhcCCHHHHHHHHHHHHHHcCChhhHHHHhhcCcHHHHHHHhccCCHHHHHHHHHHHHHhhCCCchhHHHHhcCChHHHH
Q 001833 511 LSAGPESVKMRMATTLAEMELTDHHKASLLEGNVLGPLLHLVSRGDIQMKKVAVKALRNLSSVPQNGLQMIKEGAVGPLV 590 (1008)
Q Consensus 511 L~~~~~~~~~~aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~~~~~~~i~~~G~v~~Ll 590 (1008)
|.++++-+|-..++.|+.|-..+ +. ...+|.+...|.+.++.+|++|.-|++.+-.. -..++- -.|.|+
T Consensus 108 LQHPNEyiRG~TLRFLckLkE~E-----Ll-epl~p~IracleHrhsYVRrNAilaifsIyk~---~~~L~p--DapeLi 176 (948)
T KOG1058|consen 108 LQHPNEYIRGSTLRFLCKLKEPE-----LL-EPLMPSIRACLEHRHSYVRRNAILAIFSIYKN---FEHLIP--DAPELI 176 (948)
T ss_pred ccCchHhhcchhhhhhhhcCcHH-----Hh-hhhHHHHHHHHhCcchhhhhhhheeehhHHhh---hhhhcC--ChHHHH
Confidence 66777777877777777752211 11 24567777888889999999999999988642 111111 124444
Q ss_pred -HHhcccCCCCcchHHHHHHHHHHHhccccccccCCcccccccchhHHHHHHHhhc---cCChHHHHHHHHHHHHhccCC
Q 001833 591 -DLLLHHSSSSSSLREETATAIMHLAVSTMYQESSQTPVTLLESDKEIFMLFSLIN---LTGPNVQQRILQTFNALCRSP 666 (1008)
Q Consensus 591 -~ll~~~~~~~~~~~~~a~~~L~nLa~~~~~~~~~~~~~~~l~~~~~i~~L~~ll~---~~~~~v~~~al~aL~~L~~~~ 666 (1008)
..|....+ +..+++|.-.|...-. +.++.-+...+. +-++..|...+..+...|...
T Consensus 177 ~~fL~~e~D--psCkRNAFi~L~~~D~-----------------ErAl~Yl~~~idqi~~~~~~LqlViVE~Irkv~~~~ 237 (948)
T KOG1058|consen 177 ESFLLTEQD--PSCKRNAFLMLFTTDP-----------------ERALNYLLSNIDQIPSFNDSLQLVIVELIRKVCLAN 237 (948)
T ss_pred HHHHHhccC--chhHHHHHHHHHhcCH-----------------HHHHHHHHhhHhhccCccHHHHHHHHHHHHHHHhcC
Confidence 33333322 5678888777765421 334444444333 446778888888888887632
Q ss_pred ChhhHHHHhhhcCChHHHHHhhccCChhHHHHHHHHHHHhccCCChhHHHhhhcccchHHHHHHhcCCCCHHHHHHHHHH
Q 001833 667 SAGNIKTTLTQCSAIPVLVQLCEHDNENVRANAVKLFCCLVDDGDEAIIREHVGQKCLETLVTIIQSSHNEEEIASAMGI 746 (1008)
Q Consensus 667 ~~~~~~~~i~e~~~i~~Lv~ll~~~~~~v~~~a~~~L~~Ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~v~~~a~~~ 746 (1008)
+. .+...+..+..+|.+.++.++..|+..|..|+ ..+ ..+. .+...+++++...++..++.-.+--
T Consensus 238 --p~-----~~~~~i~~i~~lL~stssaV~fEaa~tlv~lS-~~p-~alk-----~Aa~~~i~l~~kesdnnvklIvldr 303 (948)
T KOG1058|consen 238 --PA-----EKARYIRCIYNLLSSTSSAVIFEAAGTLVTLS-NDP-TALK-----AAASTYIDLLVKESDNNVKLIVLDR 303 (948)
T ss_pred --HH-----HhhHHHHHHHHHHhcCCchhhhhhcceEEEcc-CCH-HHHH-----HHHHHHHHHHHhccCcchhhhhHHH
Confidence 11 22346888999999999999999999999997 322 1111 2344556666554443344333333
Q ss_pred HhcCCCChhhHHHHHhcCCHHHHHHHhhCCCCCCCchhhHHHHHHHHHHHhcCCCCHH-HHHHHHHcCChHHHHHHhhcC
Q 001833 747 LSKLPEVPQFTQWLLDAGALPIVLNFLKNGRQNDPNRFQVVENAVGALRRFTAPTNLE-WQKRAAEAGVIPKLVQLLEYG 825 (1008)
Q Consensus 747 L~nL~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~v~~~a~~aL~~L~~~~~~~-~~~~l~~~g~l~~Lv~lL~~~ 825 (1008)
|..+.. .. ..+. .|.+--++..|.. ++-+++..++.....|+..-+-+ ..+.+.+ .+...--. =+..
T Consensus 304 l~~l~~--~~-~~il-~~l~mDvLrvLss------~dldvr~Ktldi~ldLvssrNvediv~~Lkk-e~~kT~~~-e~d~ 371 (948)
T KOG1058|consen 304 LSELKA--LH-EKIL-QGLIMDVLRVLSS------PDLDVRSKTLDIALDLVSSRNVEDIVQFLKK-EVMKTHNE-ESDD 371 (948)
T ss_pred HHHHhh--hh-HHHH-HHHHHHHHHHcCc------ccccHHHHHHHHHHhhhhhccHHHHHHHHHH-HHHhcccc-cccc
Confidence 333322 11 1111 2344455666666 67888888888888887642222 1111111 00000000 0012
Q ss_pred ChHHHHHHHHHHhhhhhcCCCCCCCCCCCCcccccCCCCCCcccccCcccCcccchhHhhccchHHHHHhhcCCChhhhH
Q 001833 826 TTLTKEHAATSLARFSKNSLGLSRPIPKRKGFWCFSPPPEIGCQVHGGLCGIESSFCLLEANAVRPLVRVLEDPDHGACE 905 (1008)
Q Consensus 826 ~~~v~~~Aa~aL~nLs~~~~~l~~~~~~~~g~~~~~~~~~~~c~vh~~~c~~~~~~~l~~~g~i~~Lv~lL~~~d~~v~~ 905 (1008)
+..-|..-..++...+..-+ =+.+.+|+.|++.+.+.|+....
T Consensus 372 ~~~yRqlLiktih~cav~Fp-------------------------------------~~aatvV~~ll~fisD~N~~aas 414 (948)
T KOG1058|consen 372 NGKYRQLLIKTIHACAVKFP-------------------------------------EVAATVVSLLLDFISDSNEAAAS 414 (948)
T ss_pred chHHHHHHHHHHHHHhhcCh-------------------------------------HHHHHHHHHHHHHhccCCHHHHH
Confidence 23456666677766663221 14556899999999998886554
Q ss_pred HHHHHHHhhhcccccchhhHHHHhcCchHHHHHHh-cCCChHHHHHHHHHHHHHhcChH
Q 001833 906 ASLDALVTLIEGERLQNGSKVLEDANAIDRMVRFL-SSPSPKLQEKALDSVERIFRLPE 963 (1008)
Q Consensus 906 ~al~aL~~L~~~~~~~~~~~~i~~~~~i~~l~~ll-~~~~~~l~~~a~~~L~~l~~~~~ 963 (1008)
..+.-+.... +++...+..+ ++++..-+ .-+...+.+-|+|++..|.....
T Consensus 415 ~vl~FvrE~i--ek~p~Lr~~i-----i~~l~~~~~~irS~ki~rgalwi~GeYce~~~ 466 (948)
T KOG1058|consen 415 DVLMFVREAI--EKFPNLRASI-----IEKLLETFPQIRSSKICRGALWILGEYCEGLS 466 (948)
T ss_pred HHHHHHHHHH--HhCchHHHHH-----HHHHHHhhhhhcccccchhHHHHHHHHHhhhH
Confidence 4444444444 3333444433 44455554 34677889999999999866543
No 140
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.13 E-value=0.0011 Score=58.06 Aligned_cols=87 Identities=23% Similarity=0.358 Sum_probs=71.0
Q ss_pred HHHHHHhh-ccCChHHHHHHHHHHHHhccCCChhhHHHHhhhcCChHHHHHhhccCChhHHHHHHHHHHHhccCCChhHH
Q 001833 637 IFMLFSLI-NLTGPNVQQRILQTFNALCRSPSAGNIKTTLTQCSAIPVLVQLCEHDNENVRANAVKLFCCLVDDGDEAII 715 (1008)
Q Consensus 637 i~~L~~ll-~~~~~~v~~~al~aL~~L~~~~~~~~~~~~i~e~~~i~~Lv~ll~~~~~~v~~~a~~~L~~Ls~~~~~~~~ 715 (1008)
|+.|+..+ ++.++.++..++++|..+.. + ..++.|+.++.++++.+|..|+++|..+-
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~~----~---------~~~~~L~~~l~d~~~~vr~~a~~aL~~i~-------- 59 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELGD----P---------EAIPALIELLKDEDPMVRRAAARALGRIG-------- 59 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCTH----H---------HHHHHHHHHHTSSSHHHHHHHHHHHHCCH--------
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcCC----H---------hHHHHHHHHHcCCCHHHHHHHHHHHHHhC--------
Confidence 46778888 78899999999999985522 1 35899999999999999999999999884
Q ss_pred HhhhcccchHHHHHHhcCCCCHHHHHHHHHHHh
Q 001833 716 REHVGQKCLETLVTIIQSSHNEEEIASAMGILS 748 (1008)
Q Consensus 716 ~~~~~~~~i~~Lv~lL~~~~~~~v~~~a~~~L~ 748 (1008)
....++.|.+++.++++..++..|+.+|+
T Consensus 60 ----~~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 60 ----DPEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp ----HHHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred ----CHHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 23588999999999777777888888775
No 141
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=97.09 E-value=0.027 Score=66.50 Aligned_cols=54 Identities=15% Similarity=0.333 Sum_probs=48.1
Q ss_pred ccccccccccccCCceeccCcccccHHHHHHHHhcCCCCCCCcCccCCCCCCcc
Q 001833 264 QSFYCPITRDVMVDPVETSSGQTFERSAIEKWFSDGNNLCPLTMTVLDTSILRP 317 (1008)
Q Consensus 264 ~~~~cpi~~~~m~dpv~~~~g~t~~r~~i~~w~~~~~~~cp~~~~~l~~~~l~p 317 (1008)
.-+.||.|..=.+|-||+-|||-||-.||+.-+..-.+.||.|+..+..-++.|
T Consensus 642 ~~LkCs~Cn~R~Kd~vI~kC~H~FC~~Cvq~r~etRqRKCP~Cn~aFganDv~~ 695 (698)
T KOG0978|consen 642 ELLKCSVCNTRWKDAVITKCGHVFCEECVQTRYETRQRKCPKCNAAFGANDVHR 695 (698)
T ss_pred hceeCCCccCchhhHHHHhcchHHHHHHHHHHHHHhcCCCCCCCCCCCcccccc
Confidence 357999999999999999999999999999999877889999999887666544
No 142
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=97.07 E-value=0.023 Score=62.69 Aligned_cols=441 Identities=15% Similarity=0.095 Sum_probs=219.0
Q ss_pred hcCCHHHHHHHHHHHHHHcCChh-hHHHHh-hcCcHHHHHHHhccCCHHHHHHHHHHHHHhhCCCchhHHHHhcCChHHH
Q 001833 512 SAGPESVKMRMATTLAEMELTDH-HKASLL-EGNVLGPLLHLVSRGDIQMKKVAVKALRNLSSVPQNGLQMIKEGAVGPL 589 (1008)
Q Consensus 512 ~~~~~~~~~~aa~~L~~Ls~~~~-~k~~i~-~~g~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~~~~~~~i~~~G~v~~L 589 (1008)
.+.++.+..++...|.+|..+.. .+-.++ -..++..+-.++++.++.++..++..+..+...+.- .|.+
T Consensus 117 ~e~~~~~~tq~~kcla~lv~~~p~~~l~~~~~~~~~~~ik~~i~~~d~~v~vs~l~~~~~~v~t~~~---------~pei 187 (728)
T KOG4535|consen 117 AESSSQTVTQIIKCLANLVSNAPYDRLKLSLLTKVWNQIKPYIRHKDVNVRVSSLTLLGAIVSTHAP---------LPEV 187 (728)
T ss_pred HhcCchhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHhcCCC---------CHHH
Confidence 45567788888889998865543 232232 123444555677888999999999998888753221 2222
Q ss_pred HHHhcccCC---------CCcc-hHH-HHHHHHHHHhccccccccCCcc-c-------ccccchh-HHHHHHHhhccC--
Q 001833 590 VDLLLHHSS---------SSSS-LRE-ETATAIMHLAVSTMYQESSQTP-V-------TLLESDK-EIFMLFSLINLT-- 647 (1008)
Q Consensus 590 l~ll~~~~~---------~~~~-~~~-~a~~~L~nLa~~~~~~~~~~~~-~-------~~l~~~~-~i~~L~~ll~~~-- 647 (1008)
-.++....+ ..++ .++ -+-..+..+..+++.....+.. + .....+. ........+.+.
T Consensus 188 ~~~~~~~~s~~n~~~~h~s~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~i~~~~~i~~~~~~~s~~~~~~~~~~~~~~~ 267 (728)
T KOG4535|consen 188 QLLLQQPCSSSNSATPHLSPPDWWKKLPAGPSLEETSVSSPKGSSEPCWLIRLCISIVVLPKEDSCSGSDAGSAAGSTYE 267 (728)
T ss_pred HHHhcCCCccccccCCCCCChHHHHhcCCCchhhhhccCCccCCCCCcceeeeeeeeeecCCccccchhhHHhhhcCccC
Confidence 222221110 0011 111 1112333333332222211110 0 0111111 112222233322
Q ss_pred ChHHHHHHHHHHHHhccCCChhhHHHHhhhcCChHHHHHhhccCChhHHHHHHHHHHHhccC----CChhHHH-hh----
Q 001833 648 GPNVQQRILQTFNALCRSPSAGNIKTTLTQCSAIPVLVQLCEHDNENVRANAVKLFCCLVDD----GDEAIIR-EH---- 718 (1008)
Q Consensus 648 ~~~v~~~al~aL~~L~~~~~~~~~~~~i~e~~~i~~Lv~ll~~~~~~v~~~a~~~L~~Ls~~----~~~~~~~-~~---- 718 (1008)
...++-.++.+|..++++ ....+..+.+ ....+..-+....+.++..+..++..+-.. ..++... ..
T Consensus 268 ps~~rle~~qvl~~~a~~--~~~~~~~~~~--l~RvI~~~~~~~~p~~~l~~a~ll~~lg~~lv~~~~P~~~k~~~q~~~ 343 (728)
T KOG4535|consen 268 PSPMRLEALQVLTLLARY--FSMTQAYLME--LGRVICKCMGEADPSIQLHGAKLLEELGTGLIQQYKPDSTKAPDQRAP 343 (728)
T ss_pred CchhHHHHHHHHHHHHHH--HHHHHHHHHH--HHHHHHccCCCCChHHHHHHHHHHHHHHHHHhhhcCCCcccchhhhcc
Confidence 235677788888888775 2222222222 122233334455789999999988777411 1111110 00
Q ss_pred ----hcccchHHHHHHhcCCCCHHHHHHHHHHHhcCCC-----ChhhHHHHHhcCCHHHHHHHhhCCCCCCCchhhHHHH
Q 001833 719 ----VGQKCLETLVTIIQSSHNEEEIASAMGILSKLPE-----VPQFTQWLLDAGALPIVLNFLKNGRQNDPNRFQVVEN 789 (1008)
Q Consensus 719 ----~~~~~i~~Lv~lL~~~~~~~v~~~a~~~L~nL~~-----~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~v~~~ 789 (1008)
...|..+. ...+...+..+..++-.+.++.. -++.++ .....++..+.+ ..+.-++.+
T Consensus 344 fw~~~l~~p~~~---~~YDs~~~Tl~~s~Cdals~i~~~~f~~lpn~~~--------T~~~~Fl~GC~d--~~~~lv~~a 410 (728)
T KOG4535|consen 344 FWTMMLNGPLPR---ALYDSEHPTLQASACDALSSILPEAFSNLPNDRQ--------TLCITFLLGCND--SKNRLVKAA 410 (728)
T ss_pred HHHHHccCCChh---hhhhhcCCCchhHHHHHHhhcCchhhcCCCCcch--------hhhHHHHhcccc--hHHHHHHHH
Confidence 01111111 11121112345556666666644 111111 011122222211 134456777
Q ss_pred HHHHHHHhcCCCCHHHHHHH-HHcCChHHHHHHhhcCChHHHHHHHHHHhhhhhcCCCCCCCCCCCCcccccCCCCCCcc
Q 001833 790 AVGALRRFTAPTNLEWQKRA-AEAGVIPKLVQLLEYGTTLTKEHAATSLARFSKNSLGLSRPIPKRKGFWCFSPPPEIGC 868 (1008)
Q Consensus 790 a~~aL~~L~~~~~~~~~~~l-~~~g~l~~Lv~lL~~~~~~v~~~Aa~aL~nLs~~~~~l~~~~~~~~g~~~~~~~~~~~c 868 (1008)
|.+++.-+.-+ +..+..+ .-.+....+...+.+..-..|..++|+++|++..
T Consensus 411 A~Ra~~VyVLH--p~lr~d~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnITdA------------------------- 463 (728)
T KOG4535|consen 411 ASRALGVYVLH--PCLRQDVIFVADAANAILMSLEDKSLNVRAKAAWSLGNITDA------------------------- 463 (728)
T ss_pred HHhhceeEEec--cchhhhHHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHH-------------------------
Confidence 88888777764 4443332 2334455566667777779999999999999832
Q ss_pred cccCcccCcccchhHhhccchHHHHHhhc---CCChhhhHHHHHHHHhhhcccc-cc-hhhHHHHhcCchHHHHHHhcCC
Q 001833 869 QVHGGLCGIESSFCLLEANAVRPLVRVLE---DPDHGACEASLDALVTLIEGER-LQ-NGSKVLEDANAIDRMVRFLSSP 943 (1008)
Q Consensus 869 ~vh~~~c~~~~~~~l~~~g~i~~Lv~lL~---~~d~~v~~~al~aL~~L~~~~~-~~-~~~~~i~~~~~i~~l~~ll~~~ 943 (1008)
.|.+.=+++...|=+..-.+..+.+.-. ..+..|+.+|..+|.|++.-.. .+ .+...+.+...++.+-...-..
T Consensus 464 -L~~~~Ps~~s~~eR~sg~ll~~~~~~A~~~~Ad~dkV~~navraLgnllQvlq~i~~~~~~e~~~~~~~~l~~~v~~~~ 542 (728)
T KOG4535|consen 464 -LIVNMPTPDSFQERFSGLLLLKMLRSAIEASADKDKVKSNAVRALGNLLQFLQPIEKPTFAEIIEESIQALISTVLTEA 542 (728)
T ss_pred -HHcCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHhhHHHHHHHhhhccHHHHHHHHHHhcccceeccc
Confidence 1222223343333222222333333222 2455699999999999981100 11 1222222222222233333456
Q ss_pred ChHHHHHHHHHHHHHhcChHHHHHhcccc---Cchhhh-hcccCCchhhHHHHHHHHHHhccccCCC
Q 001833 944 SPKLQEKALDSVERIFRLPEFKQKYGKSA---QMPLVD-LTQRGNSSMKSLSARVLAHLNVLQDQSS 1006 (1008)
Q Consensus 944 ~~~l~~~a~~~L~~l~~~~~~~~~~~~~~---~~~Lv~-l~~~~~~~~~~~Aa~~L~~L~~~~~~s~ 1006 (1008)
+-.++=++..++.|+|.++.+.-.-..=+ -..|.. +.++.|..+|..||.+|..-..-.+++.
T Consensus 543 ~~kV~WNaCya~gNLfkn~a~~lq~~~wA~~~F~~L~~Lv~~~~NFKVRi~AA~aL~vp~~re~~~d 609 (728)
T KOG4535|consen 543 AMKVRWNACYAMGNLFKNPALPLQTAPWASQAFNALTSLVTSCKNFKVRIRAAAALSVPGKREQYGD 609 (728)
T ss_pred ccccchHHHHHHHHhhcCccccccCCCchHHHHHHHHHHHHHhccceEeehhhhhhcCCCCcccchh
Confidence 77899999999999999876532111111 123444 3566899999999999988776666554
No 143
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.04 E-value=0.00016 Score=76.08 Aligned_cols=65 Identities=25% Similarity=0.328 Sum_probs=54.2
Q ss_pred ccccccccccccCCceec-cCcccccHHHHHHHHhcCCCCCCCcCccCCC-CCCccCHhhHHHHHHH
Q 001833 264 QSFYCPITRDVMVDPVET-SSGQTFERSAIEKWFSDGNNLCPLTMTVLDT-SILRPNKTLRQSIEEW 328 (1008)
Q Consensus 264 ~~~~cpi~~~~m~dpv~~-~~g~t~~r~~i~~w~~~~~~~cp~~~~~l~~-~~l~pN~~l~~~I~~w 328 (1008)
.+|.||||+++.+--.++ .|+|.||+.||-+-+..|+..||.|++.+.+ ..|.+.-+.-.+|.+.
T Consensus 42 ~~v~c~icl~llk~tmttkeClhrfc~~ci~~a~r~gn~ecptcRk~l~SkrsLr~Dp~fdaLis~i 108 (381)
T KOG0311|consen 42 IQVICPICLSLLKKTMTTKECLHRFCFDCIWKALRSGNNECPTCRKKLVSKRSLRIDPNFDALISKI 108 (381)
T ss_pred hhhccHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcCCCCchHHhhccccccCCCCccHHHHHHHH
Confidence 589999999999998888 5999999999999999999999999999854 5676655445555544
No 144
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.02 E-value=0.00064 Score=72.11 Aligned_cols=53 Identities=25% Similarity=0.422 Sum_probs=41.9
Q ss_pred ccccccccccc-cCCce----eccCcccccHHHHHHHHhcCCCCCCCcCccCCCCCCc
Q 001833 264 QSFYCPITRDV-MVDPV----ETSSGQTFERSAIEKWFSDGNNLCPLTMTVLDTSILR 316 (1008)
Q Consensus 264 ~~~~cpi~~~~-m~dpv----~~~~g~t~~r~~i~~w~~~~~~~cp~~~~~l~~~~l~ 316 (1008)
++-.||+|+.- ...|- +-.|||+||++||...|..|...||.|+.++....+.
T Consensus 2 d~~~CP~Ck~~~y~np~~kl~i~~CGH~~C~sCv~~l~~~~~~~CP~C~~~lrk~~fr 59 (309)
T TIGR00570 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGSGSCPECDTPLRKNNFR 59 (309)
T ss_pred CCCCCCcCCCCCccCcccccccCCCCCcccHHHHHHHhcCCCCCCCCCCCccchhhcc
Confidence 45689999983 33442 3369999999999998888888999999999876643
No 145
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=97.00 E-value=0.0025 Score=70.90 Aligned_cols=181 Identities=15% Similarity=0.135 Sum_probs=134.6
Q ss_pred HHHHHHHHhcCCC-ChhhHHHHHhcCCHHHHHHHhhCCCCCCCchhhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHH
Q 001833 740 IASAMGILSKLPE-VPQFTQWLLDAGALPIVLNFLKNGRQNDPNRFQVVENAVGALRRFTAPTNLEWQKRAAEAGVIPKL 818 (1008)
Q Consensus 740 ~~~a~~~L~nL~~-~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~v~~~a~~aL~~L~~~~~~~~~~~l~~~g~l~~L 818 (1008)
..+++-+|..++. -.-.+.-+.+..+.+.|+++|.. ++..+.--+...++|+... -...+..+...|++..|
T Consensus 406 ~~a~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~Ls~------Peimi~~~~t~~icn~vv~-fsnL~~~fL~~~iIdvl 478 (743)
T COG5369 406 FVAIVLFLKSMSRSVTFLRTGLLDYPIVELLIDALSN------PEIMIEFPDTIDICNKVVP-FSNLGAGFLEKSIIDVL 478 (743)
T ss_pred HHHHHHHHHHhhHHHHHHHhhccccchHHHHHHHhcC------ccceeeccchhhhhheeee-ccchHHHHHHhhHHHHH
Confidence 3445556666666 33445667788899999999998 5667778888999999987 67788889999999999
Q ss_pred HHHhhcCChHHHHHHHHHHhhhhhcCCCCCCCCCCCCcccccCCCCCCcccccCcccCcccchhHhhccchHHHHHhhcC
Q 001833 819 VQLLEYGTTLTKEHAATSLARFSKNSLGLSRPIPKRKGFWCFSPPPEIGCQVHGGLCGIESSFCLLEANAVRPLVRVLED 898 (1008)
Q Consensus 819 v~lL~~~~~~v~~~Aa~aL~nLs~~~~~l~~~~~~~~g~~~~~~~~~~~c~vh~~~c~~~~~~~l~~~g~i~~Lv~lL~~ 898 (1008)
+.++.+.+..+|....|.+.++..+- ..+..|.+....++..++++..+
T Consensus 479 ~~~v~sKDdaLqans~wvlrHlmync-------------------------------q~~ekf~~Lakig~~kvl~~~ND 527 (743)
T COG5369 479 VNLVMSKDDALQANSEWVLRHLMYNC-------------------------------QKNEKFKFLAKIGVEKVLSYTND 527 (743)
T ss_pred HHHhhcchhhhhhcchhhhhhhhhcC-------------------------------cchhhhhhHHhcCHHHHHHHhcC
Confidence 99999999999999999999998533 44456677788889999999999
Q ss_pred CChhhhHHHHHHHHhhh-cccccchhhHHHHhcCchH----HHHHHhcCCChHHHHHHHHHHHHH
Q 001833 899 PDHGACEASLDALVTLI-EGERLQNGSKVLEDANAID----RMVRFLSSPSPKLQEKALDSVERI 958 (1008)
Q Consensus 899 ~d~~v~~~al~aL~~L~-~~~~~~~~~~~i~~~~~i~----~l~~ll~~~~~~l~~~a~~~L~~l 958 (1008)
++..|++..++.|.|+. +..+.++....+.+..-.. .+.+-+...||-.-+..+-+|-++
T Consensus 528 pc~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~ylfk~l~~k~e~~np~~i~~~~yilv~~ 592 (743)
T COG5369 528 PCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRRYLFKRLIDKYEENNPMEILEGCYILVRN 592 (743)
T ss_pred cccccHHHHHHHHHhcccccccccccceeEEecChHHHHHHHHHHHHHhcCchhhhhhHHHHHHH
Confidence 99999999999999999 6655444544444443333 344444555554333334444344
No 146
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=96.96 E-value=0.0097 Score=71.32 Aligned_cols=233 Identities=18% Similarity=0.199 Sum_probs=169.8
Q ss_pred chHHHHHHhcCCCCHHHHHHHHHHHhcCCC-ChhhHHHHHhcCCHHHHHHHhhCCCCCCCchhhHHHHHHHHHHHhcCCC
Q 001833 723 CLETLVTIIQSSHNEEEIASAMGILSKLPE-VPQFTQWLLDAGALPIVLNFLKNGRQNDPNRFQVVENAVGALRRFTAPT 801 (1008)
Q Consensus 723 ~i~~Lv~lL~~~~~~~v~~~a~~~L~nL~~-~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~v~~~a~~aL~~L~~~~ 801 (1008)
.+|..++.|-+. --+..|+..|+..-. .+-....-+.-|+.|.++++|++ .-.+++--.+.+-.++.+-
T Consensus 473 QLPiVLQVLLSQ---vHRlRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLKLLQS------~a~ELrpiLVFIWAKILAv- 542 (1387)
T KOG1517|consen 473 QLPIVLQVLLSQ---VHRLRALVLLARFLDLGPWAVDLALSVGIFPYVLKLLQS------SARELRPILVFIWAKILAV- 542 (1387)
T ss_pred hcchHHHHHHHH---HHHHHHHHHHHHHhccchhhhhhhhccchHHHHHHHhcc------chHhhhhhHHHHHHHHHhc-
Confidence 345555555442 234567777776655 55556666778999999999999 5678888888888888876
Q ss_pred CHHHHHHHHHcCChHHHHHHhhcC---ChHHHHHHHHHHhhhhhcCCCCCCCCCCCCcccccCCCCCCcccccCcccCcc
Q 001833 802 NLEWQKRAAEAGVIPKLVQLLEYG---TTLTKEHAATSLARFSKNSLGLSRPIPKRKGFWCFSPPPEIGCQVHGGLCGIE 878 (1008)
Q Consensus 802 ~~~~~~~l~~~g~l~~Lv~lL~~~---~~~v~~~Aa~aL~nLs~~~~~l~~~~~~~~g~~~~~~~~~~~c~vh~~~c~~~ 878 (1008)
++.++-.+++.++...+++.|..+ +++-|..||..|+.+..+-+. |
T Consensus 543 D~SCQ~dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~l---------G---------------------- 591 (1387)
T KOG1517|consen 543 DPSCQADLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFKL---------G---------------------- 591 (1387)
T ss_pred CchhHHHHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcccch---------h----------------------
Confidence 788998999999999998888763 458999999999999853211 1
Q ss_pred cchhHhhccchHHHHHhhcCC-ChhhhHHHHHHHHhhhcccccchhhHHHHhcCchHHHHHHhcCCChHHHHHHHHHHHH
Q 001833 879 SSFCLLEANAVRPLVRVLEDP-DHGACEASLDALVTLIEGERLQNGSKVLEDANAIDRMVRFLSSPSPKLQEKALDSVER 957 (1008)
Q Consensus 879 ~~~~l~~~g~i~~Lv~lL~~~-d~~v~~~al~aL~~L~~~~~~~~~~~~i~~~~~i~~l~~ll~~~~~~l~~~a~~~L~~ 957 (1008)
.....+.+.|..-+..|.++ .+-.+.-.+-+|..|- +++..++-.=.+.++.++|..+++++-++||.+|+.+|..
T Consensus 592 -Q~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW--~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgt 668 (1387)
T KOG1517|consen 592 -QKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLW--EDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGT 668 (1387)
T ss_pred -HHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHh--hhcchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHH
Confidence 12234556666556666664 5678888888888887 3444666666678899999999999999999999999999
Q ss_pred HhcC-----hH----HHHHhc--------cc----cCchhhhhcccCCchhhHHHHHHHHHHh
Q 001833 958 IFRL-----PE----FKQKYG--------KS----AQMPLVDLTQRGNSSMKSLSARVLAHLN 999 (1008)
Q Consensus 958 l~~~-----~~----~~~~~~--------~~----~~~~Lv~l~~~~~~~~~~~Aa~~L~~L~ 999 (1008)
++.. ++ ..+.+. .+ ..+.|+.++++|.+-+|...+-+|++.-
T Consensus 669 fl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdgsplvr~ev~v~ls~~~ 731 (1387)
T KOG1517|consen 669 FLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSDGSPLVRTEVVVALSHFV 731 (1387)
T ss_pred HhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhccchHHHHHHHHHHHHHH
Confidence 8773 21 111111 11 1246888899999999999998888764
No 147
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.95 E-value=1.3 Score=52.72 Aligned_cols=285 Identities=16% Similarity=0.138 Sum_probs=149.7
Q ss_pred cHHHHHHHhccCCHHHHHHHHHHHHHhhCCCchhHHHHhcCChHHHHHHhcccCCCCcchHHHHHHHHHHHhcccccccc
Q 001833 544 VLGPLLHLVSRGDIQMKKVAVKALRNLSSVPQNGLQMIKEGAVGPLVDLLLHHSSSSSSLREETATAIMHLAVSTMYQES 623 (1008)
Q Consensus 544 ~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~~~~~~~i~~~G~v~~Ll~ll~~~~~~~~~~~~~a~~~L~nLa~~~~~~~~ 623 (1008)
..+-+=.++++....+.-.|+.++.+|... +...+.. ++..|--++.++. ..++-.|..+|..++...+..-.
T Consensus 246 ~~~fl~s~l~~K~emV~~EaArai~~l~~~--~~r~l~p--avs~Lq~flssp~---~~lRfaAvRtLnkvAm~~P~~v~ 318 (865)
T KOG1078|consen 246 LFPFLESCLRHKSEMVIYEAARAIVSLPNT--NSRELAP--AVSVLQLFLSSPK---VALRFAAVRTLNKVAMKHPQAVT 318 (865)
T ss_pred HHHHHHHHHhchhHHHHHHHHHHHhhcccc--CHhhcch--HHHHHHHHhcCcH---HHHHHHHHHHHHHHHHhCCcccc
Confidence 445555677777778888888888888631 1111111 5666666666554 67899999999999985543221
Q ss_pred CCcccccccchhHHHHHHHhhccCChHHHHHHHHHHHHhccCCChhhHHHHhhhcCChHHHHHhhccCChhHHHHHHHHH
Q 001833 624 SQTPVTLLESDKEIFMLFSLINLTGPNVQQRILQTFNALCRSPSAGNIKTTLTQCSAIPVLVQLCEHDNENVRANAVKLF 703 (1008)
Q Consensus 624 ~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~aL~~L~~~~~~~~~~~~i~e~~~i~~Lv~ll~~~~~~v~~~a~~~L 703 (1008)
.+=..+-.++...+-.+-..|+.+|..-.. ......+.. -++..+.=+.++..-+...|..+|
T Consensus 319 -----------~cN~elE~lItd~NrsIat~AITtLLKTG~----e~sv~rLm~--qI~~fv~disDeFKivvvdai~sL 381 (865)
T KOG1078|consen 319 -----------VCNLDLESLITDSNRSIATLAITTLLKTGT----ESSVDRLMK--QISSFVSDISDEFKIVVVDAIRSL 381 (865)
T ss_pred -----------ccchhHHhhhcccccchhHHHHHHHHHhcc----hhHHHHHHH--HHHHHHHhccccceEEeHHHHHHH
Confidence 011122233333344444444444443322 111111111 122222222223333344444444
Q ss_pred HHhccCCChhHHHhhhcccchHHHHHHhcCCCCHHHHHHHHHHHhcCCC-ChhhHHHHHhcCCHHHHHHHhhCCCCCCCc
Q 001833 704 CCLVDDGDEAIIREHVGQKCLETLVTIIQSSHNEEEIASAMGILSKLPE-VPQFTQWLLDAGALPIVLNFLKNGRQNDPN 782 (1008)
Q Consensus 704 ~~Ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~v~~~a~~~L~nL~~-~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~ 782 (1008)
+..- +. ...+.+..|.++|...+.-+.+.+..-++..+.. +++.+ ..++..|...+.++
T Consensus 382 c~~f---p~------k~~~~m~FL~~~Lr~eGg~e~K~aivd~Ii~iie~~pdsK-----e~~L~~LCefIEDc------ 441 (865)
T KOG1078|consen 382 CLKF---PR------KHTVMMNFLSNMLREEGGFEFKRAIVDAIIDIIEENPDSK-----ERGLEHLCEFIEDC------ 441 (865)
T ss_pred Hhhc---cH------HHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHhCcchh-----hHHHHHHHHHHHhc------
Confidence 4442 11 1224556666666665444445444444443333 33332 22455566666552
Q ss_pred hhhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHHHhhcCChHHHHHHHHHHhhhhhcCCCCCCCCCCCCcccccCC
Q 001833 783 RFQVVENAVGALRRFTAPTNLEWQKRAAEAGVIPKLVQLLEYGTTLTKEHAATSLARFSKNSLGLSRPIPKRKGFWCFSP 862 (1008)
Q Consensus 783 ~~~v~~~a~~aL~~L~~~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~v~~~Aa~aL~nLs~~~~~l~~~~~~~~g~~~~~~ 862 (1008)
....-+.+.|..+... .|. ...-...+..+...+.=.+..+|.+|..+|.+++...+.+..+
T Consensus 442 --e~~~i~~rILhlLG~E-gP~---a~~Pskyir~iyNRviLEn~ivRaaAv~alaKfg~~~~~l~~s------------ 503 (865)
T KOG1078|consen 442 --EFTQIAVRILHLLGKE-GPK---APNPSKYIRFIYNRVILENAIVRAAAVSALAKFGAQDVVLLPS------------ 503 (865)
T ss_pred --cchHHHHHHHHHHhcc-CCC---CCCcchhhHHHhhhhhhhhhhhHHHHHHHHHHHhcCCCCcccc------------
Confidence 1233444444444332 000 0000112333444444457789999999999999554443222
Q ss_pred CCCCcccccCcccCcccchhHhhccchHHHHHhhcCCChhhhHHHHHHHHhhh
Q 001833 863 PPEIGCQVHGGLCGIESSFCLLEANAVRPLVRVLEDPDHGACEASLDALVTLI 915 (1008)
Q Consensus 863 ~~~~~c~vh~~~c~~~~~~~l~~~g~i~~Lv~lL~~~d~~v~~~al~aL~~L~ 915 (1008)
+.-.|.+++.+.|.++|+.|-.+|.++.
T Consensus 504 -------------------------I~vllkRc~~D~DdevRdrAtf~l~~l~ 531 (865)
T KOG1078|consen 504 -------------------------ILVLLKRCLNDSDDEVRDRATFYLKNLE 531 (865)
T ss_pred -------------------------HHHHHHHHhcCchHHHHHHHHHHHHHhh
Confidence 3556778999999999999999999987
No 148
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.94 E-value=0.00052 Score=69.81 Aligned_cols=56 Identities=23% Similarity=0.409 Sum_probs=49.1
Q ss_pred CCCCCccccccccccccCCceeccCcccccHHHHHH-HHhcCCCCCCCcCccCCCCC
Q 001833 259 PLEPLQSFYCPITRDVMVDPVETSSGQTFERSAIEK-WFSDGNNLCPLTMTVLDTSI 314 (1008)
Q Consensus 259 ~~~~~~~~~cpi~~~~m~dpv~~~~g~t~~r~~i~~-w~~~~~~~cp~~~~~l~~~~ 314 (1008)
+..|..+|.|+||.+.|.+|+.+.|||-||-.||-. |-.+...+||.|+.......
T Consensus 209 pfip~~d~kC~lC~e~~~~ps~t~CgHlFC~~Cl~~~~t~~k~~~CplCRak~~pk~ 265 (271)
T COG5574 209 PFIPLADYKCFLCLEEPEVPSCTPCGHLFCLSCLLISWTKKKYEFCPLCRAKVYPKK 265 (271)
T ss_pred CcccccccceeeeecccCCcccccccchhhHHHHHHHHHhhccccCchhhhhccchh
Confidence 445678999999999999999999999999999999 98887888999988765443
No 149
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.92 E-value=0.58 Score=59.28 Aligned_cols=300 Identities=12% Similarity=0.115 Sum_probs=151.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHcCChhhHHHHhhcCcHHHHHHHhccCCHHHHHHHHHHHHHhhCCCchhHHHHhc
Q 001833 504 FKHLLQRLSAGPESVKMRMATTLAEMELTDHHKASLLEGNVLGPLLHLVSRGDIQMKKVAVKALRNLSSVPQNGLQMIKE 583 (1008)
Q Consensus 504 v~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~~~~~~~i~~~ 583 (1008)
||.|.+.=.+++..++..+..+=..|.........-.-..++.-|+.-|.+..-++|+.++.||..|-..+++-. +.+.
T Consensus 1000 IPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~k~~vd~y~neIl~eLL~~lt~kewRVReasclAL~dLl~g~~~~~-~~e~ 1078 (1702)
T KOG0915|consen 1000 IPRLYRYQYDPDKKVQDAMTSIWNALITDSKKVVDEYLNEILDELLVNLTSKEWRVREASCLALADLLQGRPFDQ-VKEK 1078 (1702)
T ss_pred hHHHhhhccCCcHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHcCCChHH-HHHH
Confidence 444444444666677777666655564443333223334567778888888888999999999999987554422 1111
Q ss_pred --CChHHHHHHhcccCCCCcchHHHHHHHHHHHhccccccccCCcccccccchhHHHHHHHhhc-----cCChHHHHHHH
Q 001833 584 --GAVGPLVDLLLHHSSSSSSLREETATAIMHLAVSTMYQESSQTPVTLLESDKEIFMLFSLIN-----LTGPNVQQRIL 656 (1008)
Q Consensus 584 --G~v~~Ll~ll~~~~~~~~~~~~~a~~~L~nLa~~~~~~~~~~~~~~~l~~~~~i~~L~~ll~-----~~~~~v~~~al 656 (1008)
-....+.+.+.+-.+......+.++.+|..|+-.-..... --....++..++..+- +.-++++.-++
T Consensus 1079 lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~d~~~------~~~~~~~l~~iLPfLl~~gims~v~evr~~si 1152 (1702)
T KOG0915|consen 1079 LPELWEAAFRVMDDIKESVREAADKAARALSKLCVRICDVTN------GAKGKEALDIILPFLLDEGIMSKVNEVRRFSI 1152 (1702)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCC------cccHHHHHHHHHHHHhccCcccchHHHHHHHH
Confidence 1233444444433222233445566666666652211111 1223344555555433 56788999999
Q ss_pred HHHHHhccCCChhhHHHHhhhcCChHHHHHhhccCChhHHHH-HHHHHHHhccCCChhHHHhhhcccchHHHHHHhcCCC
Q 001833 657 QTFNALCRSPSAGNIKTTLTQCSAIPVLVQLCEHDNENVRAN-AVKLFCCLVDDGDEAIIREHVGQKCLETLVTIIQSSH 735 (1008)
Q Consensus 657 ~aL~~L~~~~~~~~~~~~i~e~~~i~~Lv~ll~~~~~~v~~~-a~~~L~~Ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~ 735 (1008)
.++..|+++. +..++..+.+ .+|.|+.....-.+.+... ++++ .+.- ..+++.+-.-...++
T Consensus 1153 ~tl~dl~Kss-g~~lkP~~~~--LIp~ll~~~s~lE~~vLnYls~r~-~~~e-------------~ealDt~R~s~akss 1215 (1702)
T KOG0915|consen 1153 GTLMDLAKSS-GKELKPHFPK--LIPLLLNAYSELEPQVLNYLSLRL-INIE-------------TEALDTLRASAAKSS 1215 (1702)
T ss_pred HHHHHHHHhc-hhhhcchhhH--HHHHHHHHccccchHHHHHHHHhh-hhhH-------------HHHHHHHHHhhhcCC
Confidence 9999999863 3333333222 3555555554444444322 2222 1111 011111100000001
Q ss_pred CHHHHHHHHHHHhcCCCChhhHHHHHhcCCHHHHHHHhhCCCCCCCchhhHHHHHHHHHHHhcCCCCHHHHHHHHHcCCh
Q 001833 736 NEEEIASAMGILSKLPEVPQFTQWLLDAGALPIVLNFLKNGRQNDPNRFQVVENAVGALRRFTAPTNLEWQKRAAEAGVI 815 (1008)
Q Consensus 736 ~~~v~~~a~~~L~nL~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~v~~~a~~aL~~L~~~~~~~~~~~l~~~g~l 815 (1008)
. -+.++..+..+ .+.-+=...+|.+.++++.+- .-..+-.++..+.-|+.....+..-.. -..+
T Consensus 1216 p------mmeTi~~ci~~---iD~~vLeelip~l~el~R~sV-----gl~Tkvg~A~fI~~L~~r~~~emtP~s--gKll 1279 (1702)
T KOG0915|consen 1216 P------MMETINKCINY---IDISVLEELIPRLTELVRGSV-----GLGTKVGCASFISLLVQRLGSEMTPYS--GKLL 1279 (1702)
T ss_pred c------HHHHHHHHHHh---hhHHHHHHHHHHHHHHHhccC-----CCCcchhHHHHHHHHHHHhccccCcch--hHHH
Confidence 1 01111111110 000011235788888888742 233455666666655542111111000 1124
Q ss_pred HHHHHHhhcCChHHHHHHHHHHhhhhhc
Q 001833 816 PKLVQLLEYGTTLTKEHAATSLARFSKN 843 (1008)
Q Consensus 816 ~~Lv~lL~~~~~~v~~~Aa~aL~nLs~~ 843 (1008)
..++..+++.++.+++.-+.|.+.|..-
T Consensus 1280 ~al~~g~~dRNesv~kafAsAmG~L~k~ 1307 (1702)
T KOG0915|consen 1280 RALFPGAKDRNESVRKAFASAMGYLAKF 1307 (1702)
T ss_pred HHHhhccccccHHHHHHHHHHHHHHHhc
Confidence 5566666778999999999999999843
No 150
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=96.90 E-value=0.002 Score=50.81 Aligned_cols=55 Identities=24% Similarity=0.219 Sum_probs=45.9
Q ss_pred hhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHHHhhcCChHHHHHHHHHHhhh
Q 001833 784 FQVVENAVGALRRFTAPTNLEWQKRAAEAGVIPKLVQLLEYGTTLTKEHAATSLARF 840 (1008)
Q Consensus 784 ~~v~~~a~~aL~~L~~~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~v~~~Aa~aL~nL 840 (1008)
+.+|..|+++|++++.. .++..+. ....++|.|+.+|.++++.||..|+++|++|
T Consensus 1 p~vR~~A~~aLg~l~~~-~~~~~~~-~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEG-CPELLQP-YLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTT-THHHHHH-HHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcc-cHHHHHH-HHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 36899999999999876 4554434 4567899999999999999999999999985
No 151
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=96.87 E-value=0.05 Score=63.13 Aligned_cols=172 Identities=19% Similarity=0.149 Sum_probs=110.1
Q ss_pred HHHHHHHHhhchhhhhhHhhcCchHHHHHHH----------cCCCHHHHHHHHHHHHHhccCChhhHHHhhccCCcHHHH
Q 001833 356 LEQLQDLCQQRDQHREWVILENYIPKLIYLL----------GSKNRDVRNRALIILHILVKDSNDTKERLANGDDAVESI 425 (1008)
Q Consensus 356 l~~L~~l~~~~~~~r~~i~~~g~i~~L~~lL----------~s~~~~~~~~Al~~L~~Ls~~~~~~k~~i~~~~g~i~~L 425 (1008)
|..|+-+.++... -..+....++..|..+- ...+.++..+|+++|+|+-..++..|..+++ .|..+.+
T Consensus 2 L~~LRiLsRd~~~-~~~l~~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~-~~~~~~l 79 (446)
T PF10165_consen 2 LETLRILSRDPTG-LDPLFTEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVD-LGLAEKL 79 (446)
T ss_pred HHHHHHHccCccc-chhhccHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHH-cCcHHHH
Confidence 4445555554332 22233333355555443 3356789999999999999999999999999 8999999
Q ss_pred HHHhccC------hhHHHHHHHHHHHhcc-CchhhHHhhcccchHHHHHHHhc----------C-------CChHHHHHH
Q 001833 426 VRSLGRR------IEERKLAVALLLELST-CNTLRDQIGDVQGCILLLVTMAS----------S-------DDNQASRDA 481 (1008)
Q Consensus 426 v~~L~~~------~~~~~~A~~~L~~Ls~-~~~~~~~i~~~~g~i~~Lv~lL~----------~-------~~~~~~~~a 481 (1008)
+..|+.. .+..-....+|+-++. .++.+..+....+++..++..+. . .+......+
T Consensus 80 ~~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~Ei 159 (446)
T PF10165_consen 80 CERLKNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEI 159 (446)
T ss_pred HHHHHcccccCCChhHHHHHHHHHHHHhcCChhHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHH
Confidence 9999664 3444556666666653 66777777776778777777663 0 133456778
Q ss_pred HHHHHhhcCCcccHHHHHhcCcHHHHHHHHhcC---------CHHHHHHHHHHHHHH
Q 001833 482 QELLENLSFSDDNVVQMAKANYFKHLLQRLSAG---------PESVKMRMATTLAEM 529 (1008)
Q Consensus 482 ~~aL~~Ls~~~~n~~~i~~~g~v~~Lv~~L~~~---------~~~~~~~aa~~L~~L 529 (1008)
++.++|+..+......-...+.++.|+.++..- .......+..+|.++
T Consensus 160 LKllFNit~~~~~~~~~~~~~~~~~l~~il~~~l~~~~~~~~l~~~~~~~in~L~nl 216 (446)
T PF10165_consen 160 LKLLFNITLHYPKSVPEEFSPSIPHLVSILRRLLPPPPSSPPLDPPHSHAINALLNL 216 (446)
T ss_pred HHHHHHhhhccCcccchhhhHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHhCC
Confidence 889999965433322223445566666554321 234566677777776
No 152
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=96.86 E-value=0.044 Score=60.58 Aligned_cols=272 Identities=14% Similarity=0.101 Sum_probs=147.1
Q ss_pred hccCCHHHHHHHHHHHHHhhC------CCchhHHHHhcCChHHHH------HHhcccCCCCcchHHHHHHHHHHHhcccc
Q 001833 552 VSRGDIQMKKVAVKALRNLSS------VPQNGLQMIKEGAVGPLV------DLLLHHSSSSSSLREETATAIMHLAVSTM 619 (1008)
Q Consensus 552 L~~~~~~~~~~A~~aL~~L~~------~~~~~~~i~~~G~v~~Ll------~ll~~~~~~~~~~~~~a~~~L~nLa~~~~ 619 (1008)
+.+..|.+++.+..+|..+.. .|+.-+.-.+.|-+..+. ....+ + ..+..+..++.++.++...+.
T Consensus 304 ~~~~~p~~~l~~a~ll~~lg~~lv~~~~P~~~k~~~q~~~fw~~~l~~p~~~~~YD-s-~~~Tl~~s~Cdals~i~~~~f 381 (728)
T KOG4535|consen 304 MGEADPSIQLHGAKLLEELGTGLIQQYKPDSTKAPDQRAPFWTMMLNGPLPRALYD-S-EHPTLQASACDALSSILPEAF 381 (728)
T ss_pred CCCCChHHHHHHHHHHHHHHHHHhhhcCCCcccchhhhccHHHHHccCCChhhhhh-h-cCCCchhHHHHHHhhcCchhh
Confidence 345678899999988887752 222222222223222211 11111 1 124567777788888765332
Q ss_pred ccccCCcccccccchhHHHHHHH-hhccCChHHHHHHHHHHHHhccCCChhhHHHHhhhcCChHHHHHhhccCChhHHHH
Q 001833 620 YQESSQTPVTLLESDKEIFMLFS-LINLTGPNVQQRILQTFNALCRSPSAGNIKTTLTQCSAIPVLVQLCEHDNENVRAN 698 (1008)
Q Consensus 620 ~~~~~~~~~~~l~~~~~i~~L~~-ll~~~~~~v~~~al~aL~~L~~~~~~~~~~~~i~e~~~i~~Lv~ll~~~~~~v~~~ 698 (1008)
++-. ...+ .....+.. .-++.+.-++..|++++.-+.-++.....+..+.. +...+...+.+..-..|..
T Consensus 382 ~~lp--n~~~-----T~~~~Fl~GC~d~~~~lv~~aA~Ra~~VyVLHp~lr~d~~fv~~--aa~~il~sl~d~~ln~r~K 452 (728)
T KOG4535|consen 382 SNLP--NDRQ-----TLCITFLLGCNDSKNRLVKAAASRALGVYVLHPCLRQDVIFVAD--AANAILMSLEDKSLNVRAK 452 (728)
T ss_pred cCCC--Ccch-----hhhHHHHhcccchHHHHHHHHHHhhceeEEeccchhhhHHHHHH--HHHHHHHHhhhHhHhHHHH
Confidence 2211 0000 00111111 11223344667788888887777665554444433 4555666666777788999
Q ss_pred HHHHHHHhccC---C--ChhHHHhhhcccchHHHHHHhc--CCCCHHHHHHHHHHHhcCCC--Ch--hhHHHHHhcCCHH
Q 001833 699 AVKLFCCLVDD---G--DEAIIREHVGQKCLETLVTIIQ--SSHNEEEIASAMGILSKLPE--VP--QFTQWLLDAGALP 767 (1008)
Q Consensus 699 a~~~L~~Ls~~---~--~~~~~~~~~~~~~i~~Lv~lL~--~~~~~~v~~~a~~~L~nL~~--~~--~~~~~l~~~g~l~ 767 (1008)
+.|.+.|++.. + +.+..++-+..--+..+++.-. +..+..++..+.++|+|+.. .+ +.....+..+.+.
T Consensus 453 aawtlgnITdAL~~~~Ps~~s~~eR~sg~ll~~~~~~A~~~~Ad~dkV~~navraLgnllQvlq~i~~~~~~e~~~~~~~ 532 (728)
T KOG4535|consen 453 AAWSLGNITDALIVNMPTPDSFQERFSGLLLLKMLRSAIEASADKDKVKSNAVRALGNLLQFLQPIEKPTFAEIIEESIQ 532 (728)
T ss_pred HHHHhhhhHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHhhHHHHHHHhhhccHHHHHHHHHH
Confidence 99999998721 1 1122222211122333444322 22456789999999999876 21 1111122222222
Q ss_pred HHHHHhhCCCCCCCchhhHHHHHHHHHHHhcCCCCHHH--HHHHHHcCChHHHHHHhhc-CChHHHHHHHHHHhhhh
Q 001833 768 IVLNFLKNGRQNDPNRFQVVENAVGALRRFTAPTNLEW--QKRAAEAGVIPKLVQLLEY-GTTLTKEHAATSLARFS 841 (1008)
Q Consensus 768 ~Lv~lL~~~~~~~~~~~~v~~~a~~aL~~L~~~~~~~~--~~~l~~~g~l~~Lv~lL~~-~~~~v~~~Aa~aL~nLs 841 (1008)
.+....-. .....++-++|.+++||..+ +.. +..=....+.+.|..++.+ .+.++|.+|+.+|..-.
T Consensus 533 ~l~~~v~~-----~~~~kV~WNaCya~gNLfkn--~a~~lq~~~wA~~~F~~L~~Lv~~~~NFKVRi~AA~aL~vp~ 602 (728)
T KOG4535|consen 533 ALISTVLT-----EAAMKVRWNACYAMGNLFKN--PALPLQTAPWASQAFNALTSLVTSCKNFKVRIRAAAALSVPG 602 (728)
T ss_pred hcccceec-----ccccccchHHHHHHHHhhcC--ccccccCCCchHHHHHHHHHHHHHhccceEeehhhhhhcCCC
Confidence 22222111 14678999999999999984 332 1111123356788888875 57799999999987655
No 153
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=96.81 E-value=0.001 Score=49.58 Aligned_cols=41 Identities=24% Similarity=0.372 Sum_probs=34.7
Q ss_pred ccccccccc---CCceeccCcccccHHHHHHHHhcCCCCCCCcCc
Q 001833 267 YCPITRDVM---VDPVETSSGQTFERSAIEKWFSDGNNLCPLTMT 308 (1008)
Q Consensus 267 ~cpi~~~~m---~dpv~~~~g~t~~r~~i~~w~~~~~~~cp~~~~ 308 (1008)
.||++.+.+ ..|+++++||+|+..++.++. .....||++++
T Consensus 1 ~C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~-~~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTSCGHIFCEKCLKKLK-GKSVKCPICRK 44 (44)
T ss_pred CCcCcCccccCCCCeEEcccCCHHHHHHHHhhc-CCCCCCcCCCC
Confidence 388888888 468999999999999999998 55678999864
No 154
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=96.80 E-value=0.031 Score=67.22 Aligned_cols=238 Identities=13% Similarity=0.079 Sum_probs=163.6
Q ss_pred hHHHHHHhcccCCCCcchHHHHHHHHHHHhccccccccCCcccccccchhHHHHHHHhhccCChHHHHHHHHHHHHhccC
Q 001833 586 VGPLVDLLLHHSSSSSSLREETATAIMHLAVSTMYQESSQTPVTLLESDKEIFMLFSLINLTGPNVQQRILQTFNALCRS 665 (1008)
Q Consensus 586 v~~Ll~ll~~~~~~~~~~~~~a~~~L~nLa~~~~~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~aL~~L~~~ 665 (1008)
+|..++.|-+. .-+-.|+..|+..-.-+.- .|.+--+-|.++-.+++|+++-.+++...+.+-..+..-
T Consensus 474 LPiVLQVLLSQ-----vHRlRAL~LL~RFLDlGpW------AV~LaLsVGIFPYVLKLLQS~a~ELrpiLVFIWAKILAv 542 (1387)
T KOG1517|consen 474 LPIVLQVLLSQ-----VHRLRALVLLARFLDLGPW------AVDLALSVGIFPYVLKLLQSSARELRPILVFIWAKILAV 542 (1387)
T ss_pred cchHHHHHHHH-----HHHHHHHHHHHHHhccchh------hhhhhhccchHHHHHHHhccchHhhhhhHHHHHHHHHhc
Confidence 45555555432 1244556666555432211 233555678899999999999999998888777776543
Q ss_pred CChhhHHHHhhhcCChHHHHHhhcc-C--ChhHHHHHHHHHHHhccCCChhHHHhhhcccchHHHHHHhcCCCCHHHHHH
Q 001833 666 PSAGNIKTTLTQCSAIPVLVQLCEH-D--NENVRANAVKLFCCLVDDGDEAIIREHVGQKCLETLVTIIQSSHNEEEIAS 742 (1008)
Q Consensus 666 ~~~~~~~~~i~e~~~i~~Lv~ll~~-~--~~~v~~~a~~~L~~Ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~v~~~ 742 (1008)
.+.++..+...++-..++..+.. + +++.|..|+..|+.++ .+-.......++.+.+..-...|.+++.+-.+.-
T Consensus 543 --D~SCQ~dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv-~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW 619 (1387)
T KOG1517|consen 543 --DPSCQADLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIV-RNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQW 619 (1387)
T ss_pred --CchhHHHHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHH-cccchhHHHhccccHHHHHHHHhcCCccHHHHHH
Confidence 13334334444445666666665 3 4689999999999998 4454455555677778877888887545566777
Q ss_pred HHHHHhcCCC-ChhhHHHHHhcCCHHHHHHHhhCCCCCCCchhhHHHHHHHHHHHhcCCC---CHHHHHH----------
Q 001833 743 AMGILSKLPE-VPQFTQWLLDAGALPIVLNFLKNGRQNDPNRFQVVENAVGALRRFTAPT---NLEWQKR---------- 808 (1008)
Q Consensus 743 a~~~L~nL~~-~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~v~~~a~~aL~~L~~~~---~~~~~~~---------- 808 (1008)
++-+|+.|-. .+..+..=.+.++...|+.+|.+ +.++||.+|+.||+.|.... .++....
T Consensus 620 ~~icLG~LW~d~~~Arw~G~r~~AhekL~~~LsD------~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~ 693 (1387)
T KOG1517|consen 620 LCICLGRLWEDYDEARWSGRRDNAHEKLILLLSD------PVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDE 693 (1387)
T ss_pred HHHHHHHHhhhcchhhhccccccHHHHHHHHhcC------ccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhh
Confidence 8889999988 66666666778899999999999 78999999999999998742 1111111
Q ss_pred -HHHcCChH----HHHHHhhcCChHHHHHHHHHHhhhhhc
Q 001833 809 -AAEAGVIP----KLVQLLEYGTTLTKEHAATSLARFSKN 843 (1008)
Q Consensus 809 -l~~~g~l~----~Lv~lL~~~~~~v~~~Aa~aL~nLs~~ 843 (1008)
..-.+.++ .++.++.++++-++.+.+.+|..+...
T Consensus 694 ~~~~E~~i~~~~~~ll~~vsdgsplvr~ev~v~ls~~~~g 733 (1387)
T KOG1517|consen 694 RTSIEDLIIKGLMSLLALVSDGSPLVRTEVVVALSHFVVG 733 (1387)
T ss_pred hhhHHHHHHhhHHHHHHHHhccchHHHHHHHHHHHHHHHh
Confidence 11122333 677888899999999999999888754
No 155
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=96.73 E-value=0.067 Score=56.27 Aligned_cols=237 Identities=17% Similarity=0.146 Sum_probs=155.3
Q ss_pred HHhccCCHHHHHHHHHHHHHhhCCCchhHHHHhc-CChHHHHHHhcccCCCCcchHHHHHHHHHHHhccccccccCCccc
Q 001833 550 HLVSRGDIQMKKVAVKALRNLSSVPQNGLQMIKE-GAVGPLVDLLLHHSSSSSSLREETATAIMHLAVSTMYQESSQTPV 628 (1008)
Q Consensus 550 ~lL~~~~~~~~~~A~~aL~~L~~~~~~~~~i~~~-G~v~~Ll~ll~~~~~~~~~~~~~a~~~L~nLa~~~~~~~~~~~~~ 628 (1008)
++++.-++-.+--|..+|.++...++.|..+..+ ..-..++++++..-.. .++|.+.+-+++.++.++...+.
T Consensus 156 kl~Q~i~~lTrlfav~cl~~l~~~~e~R~i~waentcs~r~~e~l~n~vg~-~qlQY~SL~~iw~lTf~~~~aqd----- 229 (432)
T COG5231 156 KLSQLIDFLTRLFAVSCLSNLEFDVEKRKIEWAENTCSRRFMEILQNYVGV-KQLQYNSLIIIWILTFSKECAQD----- 229 (432)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhhHHHHHHHHHHhhhhh-hhhHHHHHHHHHHHhcCHHHHHH-----
Confidence 4555556678889999999999888888776543 4566788888765432 67899999999999987654422
Q ss_pred ccccchhHHHHHHHhhcc-CChHHHHHHHHHHHHhccCCChhhHHHHhhhcCChHHHHHhhccC--ChhHHHHHHHHHHH
Q 001833 629 TLLESDKEIFMLFSLINL-TGPNVQQRILQTFNALCRSPSAGNIKTTLTQCSAIPVLVQLCEHD--NENVRANAVKLFCC 705 (1008)
Q Consensus 629 ~~l~~~~~i~~L~~ll~~-~~~~v~~~al~aL~~L~~~~~~~~~~~~i~e~~~i~~Lv~ll~~~--~~~v~~~a~~~L~~ 705 (1008)
+-.-.+.+..++.+++. ....+-+-++.++.+++....-..+.......++.+..-.+++.+ +++++...-.+=..
T Consensus 230 -i~K~~dli~dli~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~ 308 (432)
T COG5231 230 -IDKMDDLINDLIAIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSR 308 (432)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHH
Confidence 11223455666666663 345677788899999987422234455555555544444444443 55554433221111
Q ss_pred hc---------------------cCCC--------hhHHHhhhc--ccchHHHHHHhcCCCCHHHHHHHHHHHhcCCC-C
Q 001833 706 LV---------------------DDGD--------EAIIREHVG--QKCLETLVTIIQSSHNEEEIASAMGILSKLPE-V 753 (1008)
Q Consensus 706 Ls---------------------~~~~--------~~~~~~~~~--~~~i~~Lv~lL~~~~~~~v~~~a~~~L~nL~~-~ 753 (1008)
|. .+.+ ..++..+.+ ...+..|..+++...+.....-|+.-++.+.. .
T Consensus 309 l~~~~k~l~~fD~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~ 388 (432)
T COG5231 309 LVQNTKKLCIFDNYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQLVRAS 388 (432)
T ss_pred HHhhhhhhhHHHHHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhC
Confidence 11 0111 112223322 24678888888886432233456667777777 8
Q ss_pred hhhHHHHHhcCCHHHHHHHhhCCCCCCCchhhHHHHHHHHHHHhcC
Q 001833 754 PQFTQWLLDAGALPIVLNFLKNGRQNDPNRFQVVENAVGALRRFTA 799 (1008)
Q Consensus 754 ~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~v~~~a~~aL~~L~~ 799 (1008)
|+.+..+...|+=..+.+++.+ ++++++-.|+.++..+..
T Consensus 389 PE~~~vl~Kyg~k~~im~L~nh------~d~~VkfeAl~a~q~~i~ 428 (432)
T COG5231 389 PEINAVLSKYGVKEIIMNLINH------DDDDVKFEALQALQTCIS 428 (432)
T ss_pred chHHHHHHHhhhHHHHHHHhcC------CCchhhHHHHHHHHHHHh
Confidence 9999999999999999999999 788999999999887653
No 156
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=96.72 E-value=0.35 Score=50.08 Aligned_cols=227 Identities=15% Similarity=0.199 Sum_probs=143.1
Q ss_pred cHHHHHHHHhcCCHHHHHHHHHHHHHHcCChhhHHHHhhcCcHHHHHHHhccC--CHHHHHHHHHHHHHhhCCCchhHHH
Q 001833 503 YFKHLLQRLSAGPESVKMRMATTLAEMELTDHHKASLLEGNVLGPLLHLVSRG--DIQMKKVAVKALRNLSSVPQNGLQM 580 (1008)
Q Consensus 503 ~v~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~--~~~~~~~A~~aL~~L~~~~~~~~~i 580 (1008)
.+..+.+...+++...+.+.+.+|+. .....+++.|+..|.+. .|-+|..|..||.++..
T Consensus 37 ~i~~i~ka~~d~s~llkhe~ay~LgQ----------~~~~~Av~~l~~vl~desq~pmvRhEAaealga~~~-------- 98 (289)
T KOG0567|consen 37 AIKAITKAFIDDSALLKHELAYVLGQ----------MQDEDAVPVLVEVLLDESQEPMVRHEAAEALGAIGD-------- 98 (289)
T ss_pred HHHHHHHhcccchhhhccchhhhhhh----------hccchhhHHHHHHhcccccchHHHHHHHHHHHhhcc--------
Confidence 36666666667666777778888777 34567899999998765 67889999999998862
Q ss_pred HhcCChHHHHHHhcccCCCCcchHHHHHHHHHHHhccccccc---------cCCcccccccchhHHHHHHHhhc-cCChH
Q 001833 581 IKEGAVGPLVDLLLHHSSSSSSLREETATAIMHLAVSTMYQE---------SSQTPVTLLESDKEIFMLFSLIN-LTGPN 650 (1008)
Q Consensus 581 ~~~G~v~~Ll~ll~~~~~~~~~~~~~a~~~L~nLa~~~~~~~---------~~~~~~~~l~~~~~i~~L~~ll~-~~~~~ 650 (1008)
.+.++.+-+..+++. ..+++.+..++..+-..+.... .+|..- .....+..+-..+. .+.+.
T Consensus 99 --~~~~~~l~k~~~dp~---~~v~ETc~lAi~rle~~~~~~~~~~~~p~~SvdPa~p---~~~ssv~~lr~~lld~t~~l 170 (289)
T KOG0567|consen 99 --PESLEILTKYIKDPC---KEVRETCELAIKRLEWKDIIDKIANSSPYISVDPAPP---ANLSSVHELRAELLDETKPL 170 (289)
T ss_pred --hhhHHHHHHHhcCCc---cccchHHHHHHHHHHHhhccccccccCccccCCCCCc---cccccHHHHHHHHHhcchhH
Confidence 223455555553333 4567777777777655322111 011111 12223444433333 33344
Q ss_pred HHH-HHHHHHHHhccCCChhhHHHHhhhcCChHHHHHhhccCChhHHHHHHHHHHHhccCCChhHHHhhhcccchHHHHH
Q 001833 651 VQQ-RILQTFNALCRSPSAGNIKTTLTQCSAIPVLVQLCEHDNENVRANAVKLFCCLVDDGDEAIIREHVGQKCLETLVT 729 (1008)
Q Consensus 651 v~~-~al~aL~~L~~~~~~~~~~~~i~e~~~i~~Lv~ll~~~~~~v~~~a~~~L~~Ls~~~~~~~~~~~~~~~~i~~Lv~ 729 (1008)
..+ .+...|.|+.. + .++..|++=+..++.-.|..++.+|..|- ....++.|..
T Consensus 171 ~~Ry~amF~LRn~g~----E---------eaI~al~~~l~~~SalfrhEvAfVfGQl~------------s~~ai~~L~k 225 (289)
T KOG0567|consen 171 FERYRAMFYLRNIGT----E---------EAINALIDGLADDSALFRHEVAFVFGQLQ------------SPAAIPSLIK 225 (289)
T ss_pred HHHHhhhhHhhccCc----H---------HHHHHHHHhcccchHHHHHHHHHHHhhcc------------chhhhHHHHH
Confidence 333 34444444421 2 24666666677778888999999998885 2356888888
Q ss_pred HhcCC-CCHHHHHHHHHHHhcCCCChhhHHHHHhcCCHHHHHHHhhCCCCCCCchhhHHHHHHHHHHH
Q 001833 730 IIQSS-HNEEEIASAMGILSKLPEVPQFTQWLLDAGALPIVLNFLKNGRQNDPNRFQVVENAVGALRR 796 (1008)
Q Consensus 730 lL~~~-~~~~v~~~a~~~L~nL~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~v~~~a~~aL~~ 796 (1008)
.|.+. .++-++..|+.+|+.++. ...++.|.+++.+ ...-+++.+..+|--
T Consensus 226 ~L~d~~E~pMVRhEaAeALGaIa~----------e~~~~vL~e~~~D------~~~vv~esc~valdm 277 (289)
T KOG0567|consen 226 VLLDETEHPMVRHEAAEALGAIAD----------EDCVEVLKEYLGD------EERVVRESCEVALDM 277 (289)
T ss_pred HHHhhhcchHHHHHHHHHHHhhcC----------HHHHHHHHHHcCC------cHHHHHHHHHHHHHH
Confidence 77665 456788899999999884 4467788888888 555666666665543
No 157
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=96.67 E-value=0.0031 Score=68.33 Aligned_cols=51 Identities=29% Similarity=0.520 Sum_probs=44.7
Q ss_pred ccccccccccCCceecc-CcccccHHHHHHHHhcCCCCCCCcCccCCCCCCcc
Q 001833 266 FYCPITRDVMVDPVETS-SGQTFERSAIEKWFSDGNNLCPLTMTVLDTSILRP 317 (1008)
Q Consensus 266 ~~cpi~~~~m~dpv~~~-~g~t~~r~~i~~w~~~~~~~cp~~~~~l~~~~l~p 317 (1008)
+.|.||+|+=++||+-+ ||+-|||+-|++++.+ +.+||+|+++|+..+++|
T Consensus 1 m~CaISgEvP~~PVvS~~Sg~vfEkrLIEqyI~e-~G~DPIt~~pLs~eelV~ 52 (506)
T KOG0289|consen 1 MVCAISGEVPEEPVVSPVSGHVFEKRLIEQYIAE-TGKDPITNEPLSIEELVE 52 (506)
T ss_pred CeecccCCCCCCccccccccchHHHHHHHHHHHH-cCCCCCCCCcCCHHHeee
Confidence 57999999999999985 9999999999999976 446999999998776655
No 158
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.60 E-value=0.97 Score=53.28 Aligned_cols=342 Identities=15% Similarity=0.155 Sum_probs=196.6
Q ss_pred hcCCChHHHHHHHHHHHhhcCCcccHHHHHhcCcHHH----HHHHHhcCCHHHHHHHHHHHHHHcCChhhHHHHhhcCcH
Q 001833 470 ASSDDNQASRDAQELLENLSFSDDNVVQMAKANYFKH----LLQRLSAGPESVKMRMATTLAEMELTDHHKASLLEGNVL 545 (1008)
Q Consensus 470 L~~~~~~~~~~a~~aL~~Ls~~~~n~~~i~~~g~v~~----Lv~~L~~~~~~~~~~aa~~L~~Ls~~~~~k~~i~~~g~i 545 (1008)
|+.++.-++-..++.|..| -+...+.+ +..-|.+...=+|.+|..+++.+-...+. +. ..+
T Consensus 108 LQHPNEyiRG~TLRFLckL----------kE~ELlepl~p~IracleHrhsYVRrNAilaifsIyk~~~~---L~-pDa- 172 (948)
T KOG1058|consen 108 LQHPNEYIRGSTLRFLCKL----------KEPELLEPLMPSIRACLEHRHSYVRRNAILAIFSIYKNFEH---LI-PDA- 172 (948)
T ss_pred ccCchHhhcchhhhhhhhc----------CcHHHhhhhHHHHHHHHhCcchhhhhhhheeehhHHhhhhh---hc-CCh-
Confidence 4456777777666666555 23344444 44556677888999999888886433111 11 122
Q ss_pred HHHH-H-HhccCCHHHHHHHHHHHHHhhCCCchhHHHHhcCChHHHHHHhcccCCCCcchHHHHHHHHHHHhcccccccc
Q 001833 546 GPLL-H-LVSRGDIQMKKVAVKALRNLSSVPQNGLQMIKEGAVGPLVDLLLHHSSSSSSLREETATAIMHLAVSTMYQES 623 (1008)
Q Consensus 546 ~~Lv-~-lL~~~~~~~~~~A~~aL~~L~~~~~~~~~i~~~G~v~~Ll~ll~~~~~~~~~~~~~a~~~L~nLa~~~~~~~~ 623 (1008)
|.|+ + ++...+|..+++|.-.|...-. +.++..|...+..-.+-.+.++--.+..+...+..+....
T Consensus 173 peLi~~fL~~e~DpsCkRNAFi~L~~~D~----------ErAl~Yl~~~idqi~~~~~~LqlViVE~Irkv~~~~p~~~- 241 (948)
T KOG1058|consen 173 PELIESFLLTEQDPSCKRNAFLMLFTTDP----------ERALNYLLSNIDQIPSFNDSLQLVIVELIRKVCLANPAEK- 241 (948)
T ss_pred HHHHHHHHHhccCchhHHHHHHHHHhcCH----------HHHHHHHHhhHhhccCccHHHHHHHHHHHHHHHhcCHHHh-
Confidence 3333 3 3345688899998877765521 1233444444433222124556666666766665433322
Q ss_pred CCcccccccchhHHHHHHHhhccCChHHHHHHHHHHHHhccCCChhhHHHHhhhcCChHHHHHhhccC-ChhHHHHHHHH
Q 001833 624 SQTPVTLLESDKEIFMLFSLINLTGPNVQQRILQTFNALCRSPSAGNIKTTLTQCSAIPVLVQLCEHD-NENVRANAVKL 702 (1008)
Q Consensus 624 ~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~aL~~L~~~~~~~~~~~~i~e~~~i~~Lv~ll~~~-~~~v~~~a~~~ 702 (1008)
...+..++.+|.++++.+...+..+|..|+..|..- + .+...+++++... +..++.-..--
T Consensus 242 ----------~~~i~~i~~lL~stssaV~fEaa~tlv~lS~~p~al--k------~Aa~~~i~l~~kesdnnvklIvldr 303 (948)
T KOG1058|consen 242 ----------ARYIRCIYNLLSSTSSAVIFEAAGTLVTLSNDPTAL--K------AAASTYIDLLVKESDNNVKLIVLDR 303 (948)
T ss_pred ----------hHHHHHHHHHHhcCCchhhhhhcceEEEccCCHHHH--H------HHHHHHHHHHHhccCcchhhhhHHH
Confidence 356788888888889999988988888887653221 1 1345566666443 44555544444
Q ss_pred HHHhccCCChhHHHhhhcccchHHHHHHhcCCCCHHHHHHHHHHHhcCCCChhhHHHHHhcCCHHHHHHHhhC-----CC
Q 001833 703 FCCLVDDGDEAIIREHVGQKCLETLVTIIQSSHNEEEIASAMGILSKLPEVPQFTQWLLDAGALPIVLNFLKN-----GR 777 (1008)
Q Consensus 703 L~~Ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~v~~~a~~~L~nL~~~~~~~~~l~~~g~l~~Lv~lL~~-----~~ 777 (1008)
|..+. ..... + =.|.+-.++.+|.. ++-+++..++.+.-.|+.+. -+.-++.+|+. ..
T Consensus 304 l~~l~-~~~~~-i----l~~l~mDvLrvLss-~dldvr~Ktldi~ldLvssr----------Nvediv~~Lkke~~kT~~ 366 (948)
T KOG1058|consen 304 LSELK-ALHEK-I----LQGLIMDVLRVLSS-PDLDVRSKTLDIALDLVSSR----------NVEDIVQFLKKEVMKTHN 366 (948)
T ss_pred HHHHh-hhhHH-H----HHHHHHHHHHHcCc-ccccHHHHHHHHHHhhhhhc----------cHHHHHHHHHHHHHhccc
Confidence 55553 11111 1 11344455666766 45578888887777766521 12222333321 11
Q ss_pred CCCCchhhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHHHhhcCChHHHHHHHHHHhhhhhcCCCCCCCCCCCCcc
Q 001833 778 QNDPNRFQVVENAVGALRRFTAPTNLEWQKRAAEAGVIPKLVQLLEYGTTLTKEHAATSLARFSKNSLGLSRPIPKRKGF 857 (1008)
Q Consensus 778 ~~~~~~~~v~~~a~~aL~~L~~~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~v~~~Aa~aL~nLs~~~~~l~~~~~~~~g~ 857 (1008)
.....+...|...+.++..++.. -|+.. +.++|.|++.+.+.++........-+......-++
T Consensus 367 ~e~d~~~~yRqlLiktih~cav~-Fp~~a-----atvV~~ll~fisD~N~~aas~vl~FvrE~iek~p~----------- 429 (948)
T KOG1058|consen 367 EESDDNGKYRQLLIKTIHACAVK-FPEVA-----ATVVSLLLDFISDSNEAAASDVLMFVREAIEKFPN----------- 429 (948)
T ss_pred cccccchHHHHHHHHHHHHHhhc-ChHHH-----HHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhCch-----------
Confidence 01113445678888888888775 46654 34589999999988775444444444443322221
Q ss_pred cccCCCCCCcccccCcccCcccchhHhhccchHHHHHhhc-CCChhhhHHHHHHHHhhh
Q 001833 858 WCFSPPPEIGCQVHGGLCGIESSFCLLEANAVRPLVRVLE-DPDHGACEASLDALVTLI 915 (1008)
Q Consensus 858 ~~~~~~~~~~c~vh~~~c~~~~~~~l~~~g~i~~Lv~lL~-~~d~~v~~~al~aL~~L~ 915 (1008)
..+.+|..|++-+. -....+...|+|.++..+
T Consensus 430 --------------------------Lr~~ii~~l~~~~~~irS~ki~rgalwi~GeYc 462 (948)
T KOG1058|consen 430 --------------------------LRASIIEKLLETFPQIRSSKICRGALWILGEYC 462 (948)
T ss_pred --------------------------HHHHHHHHHHHhhhhhcccccchhHHHHHHHHH
Confidence 23346777777665 356778888999998888
No 159
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.53 E-value=2.2 Score=50.81 Aligned_cols=252 Identities=16% Similarity=0.181 Sum_probs=126.8
Q ss_pred hHHHHHHhcCCCCHHHHHHHHHHHhcCCC-ChhhHHHHHhcCCHHHHHHHhhCCCCCCCchhhHHHHHHHHHHHhcCC--
Q 001833 724 LETLVTIIQSSHNEEEIASAMGILSKLPE-VPQFTQWLLDAGALPIVLNFLKNGRQNDPNRFQVVENAVGALRRFTAP-- 800 (1008)
Q Consensus 724 i~~Lv~lL~~~~~~~v~~~a~~~L~nL~~-~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~v~~~a~~aL~~L~~~-- 800 (1008)
.+.+-.++.+ ...-+...|++++.+|.. +...... ++..+--++.+ ++..+|-.|.++|..++..
T Consensus 247 ~~fl~s~l~~-K~emV~~EaArai~~l~~~~~r~l~p-----avs~Lq~flss------p~~~lRfaAvRtLnkvAm~~P 314 (865)
T KOG1078|consen 247 FPFLESCLRH-KSEMVIYEAARAIVSLPNTNSRELAP-----AVSVLQLFLSS------PKVALRFAAVRTLNKVAMKHP 314 (865)
T ss_pred HHHHHHHHhc-hhHHHHHHHHHHHhhccccCHhhcch-----HHHHHHHHhcC------cHHHHHHHHHHHHHHHHHhCC
Confidence 4444455555 334577889999999887 4333221 66777777777 7889999999999988754
Q ss_pred -----CCHHHHHHHHHcC---ChHHHHHHhhcCChHHHHHHHHHHhhhhhcCCCCCCCCCCC-CcccccC-CCCCCcccc
Q 001833 801 -----TNLEWQKRAAEAG---VIPKLVQLLEYGTTLTKEHAATSLARFSKNSLGLSRPIPKR-KGFWCFS-PPPEIGCQV 870 (1008)
Q Consensus 801 -----~~~~~~~~l~~~g---~l~~Lv~lL~~~~~~v~~~Aa~aL~nLs~~~~~l~~~~~~~-~g~~~~~-~~~~~~c~v 870 (1008)
.+.+.-..+-+.+ ..+.+..+|+.|+.....+-..-+.++..+-..--+.+-.. ...+|.. |. -
T Consensus 315 ~~v~~cN~elE~lItd~NrsIat~AITtLLKTG~e~sv~rLm~qI~~fv~disDeFKivvvdai~sLc~~fp~------k 388 (865)
T KOG1078|consen 315 QAVTVCNLDLESLITDSNRSIATLAITTLLKTGTESSVDRLMKQISSFVSDISDEFKIVVVDAIRSLCLKFPR------K 388 (865)
T ss_pred ccccccchhHHhhhcccccchhHHHHHHHHHhcchhHHHHHHHHHHHHHHhccccceEEeHHHHHHHHhhccH------H
Confidence 1333333333222 34556777777766444444444444432211100000000 0000000 00 0
Q ss_pred cCcccCcc-cchhHhhcc-------chHHHHHhhcCCChhhhHHHHHHHHhhh-cccccchhhHHHH-----------hc
Q 001833 871 HGGLCGIE-SSFCLLEAN-------AVRPLVRVLEDPDHGACEASLDALVTLI-EGERLQNGSKVLE-----------DA 930 (1008)
Q Consensus 871 h~~~c~~~-~~~~l~~~g-------~i~~Lv~lL~~~d~~v~~~al~aL~~L~-~~~~~~~~~~~i~-----------~~ 930 (1008)
|.+ ... -...|.+.| .+..++.... .++.-++.++.-|+.+. +.+..+-+...+. ..
T Consensus 389 ~~~--~m~FL~~~Lr~eGg~e~K~aivd~Ii~iie-~~pdsKe~~L~~LCefIEDce~~~i~~rILhlLG~EgP~a~~Ps 465 (865)
T KOG1078|consen 389 HTV--MMNFLSNMLREEGGFEFKRAIVDAIIDIIE-ENPDSKERGLEHLCEFIEDCEFTQIAVRILHLLGKEGPKAPNPS 465 (865)
T ss_pred HHH--HHHHHHHHHHhccCchHHHHHHHHHHHHHH-hCcchhhHHHHHHHHHHHhccchHHHHHHHHHHhccCCCCCCcc
Confidence 000 000 000011222 2222333332 24455666666777766 4332221211111 12
Q ss_pred CchHHHHHHhcCCChHHHHHHHHHHHHHhcChHHHHHhccccCchhhhhcccCCchhhHHHHHHHHHHh
Q 001833 931 NAIDRMVRFLSSPSPKLQEKALDSVERIFRLPEFKQKYGKSAQMPLVDLTQRGNSSMKSLSARVLAHLN 999 (1008)
Q Consensus 931 ~~i~~l~~ll~~~~~~l~~~a~~~L~~l~~~~~~~~~~~~~~~~~Lv~l~~~~~~~~~~~Aa~~L~~L~ 999 (1008)
.-+..+.+.+.-.|.-++..|+.+|.++....+. ........|.+.+.+.|.++|..|.-.|..+.
T Consensus 466 kyir~iyNRviLEn~ivRaaAv~alaKfg~~~~~---l~~sI~vllkRc~~D~DdevRdrAtf~l~~l~ 531 (865)
T KOG1078|consen 466 KYIRFIYNRVILENAIVRAAAVSALAKFGAQDVV---LLPSILVLLKRCLNDSDDEVRDRATFYLKNLE 531 (865)
T ss_pred hhhHHHhhhhhhhhhhhHHHHHHHHHHHhcCCCC---ccccHHHHHHHHhcCchHHHHHHHHHHHHHhh
Confidence 2345555555556777888888888777511110 00111123556778899999999999999887
No 160
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=96.52 E-value=0.0017 Score=73.58 Aligned_cols=66 Identities=26% Similarity=0.488 Sum_probs=56.4
Q ss_pred CCccccccccccccCCceec-cCcccccHHHHHHHHhcCCCCCCCcCccCCCCCCcc-CHhhHHHHHHH
Q 001833 262 PLQSFYCPITRDVMVDPVET-SSGQTFERSAIEKWFSDGNNLCPLTMTVLDTSILRP-NKTLRQSIEEW 328 (1008)
Q Consensus 262 ~~~~~~cpi~~~~m~dpv~~-~~g~t~~r~~i~~w~~~~~~~cp~~~~~l~~~~l~p-N~~l~~~I~~w 328 (1008)
+.+++.||+|..++.||+.. .|||.||+.||.+|+.. +..||.+++++...+..| -...+..+..|
T Consensus 18 ~~~~l~C~~C~~vl~~p~~~~~cgh~fC~~C~~~~~~~-~~~cp~~~~~~~~~~~~~~~~~~~~~~~~l 85 (391)
T KOG0297|consen 18 LDENLLCPICMSVLRDPVQTTTCGHRFCAGCLLESLSN-HQKCPVCRQELTQAEELPVPRALRRELLKL 85 (391)
T ss_pred CcccccCccccccccCCCCCCCCCCcccccccchhhcc-CcCCcccccccchhhccCchHHHHHHHHhc
Confidence 45679999999999999995 99999999999999987 888999999888777776 34567777766
No 161
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=96.49 E-value=0.0056 Score=44.70 Aligned_cols=39 Identities=31% Similarity=0.365 Sum_probs=35.6
Q ss_pred HHHHHHHHHcCChHHHHHHhhcCChHHHHHHHHHHhhhh
Q 001833 803 LEWQKRAAEAGVIPKLVQLLEYGTTLTKEHAATSLARFS 841 (1008)
Q Consensus 803 ~~~~~~l~~~g~l~~Lv~lL~~~~~~v~~~Aa~aL~nLs 841 (1008)
++.+..+.+.|+++.|+.++.+++++++..|+++|.|++
T Consensus 2 ~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 2 DEQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred cHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 346778899999999999999999999999999999987
No 162
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=96.49 E-value=0.0059 Score=44.55 Aligned_cols=39 Identities=33% Similarity=0.413 Sum_probs=35.7
Q ss_pred hhhHHHHhhcCcHHHHHHHhccCCHHHHHHHHHHHHHhh
Q 001833 533 DHHKASLLEGNVLGPLLHLVSRGDIQMKKVAVKALRNLS 571 (1008)
Q Consensus 533 ~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~~L~ 571 (1008)
++++..+.+.|+++.|++++.++++.+++.|+++|+||+
T Consensus 2 ~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 2 DEQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred cHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 347778889999999999999999999999999999997
No 163
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=96.45 E-value=0.11 Score=63.89 Aligned_cols=255 Identities=16% Similarity=0.124 Sum_probs=149.7
Q ss_pred ChHHHHHHHHHHHHhccCCChhhHHHHhhhcCChHHHHHhhccCChhHHHHHHHHHHHhccCC--ChhHHHhhhcccchH
Q 001833 648 GPNVQQRILQTFNALCRSPSAGNIKTTLTQCSAIPVLVQLCEHDNENVRANAVKLFCCLVDDG--DEAIIREHVGQKCLE 725 (1008)
Q Consensus 648 ~~~v~~~al~aL~~L~~~~~~~~~~~~i~e~~~i~~Lv~ll~~~~~~v~~~a~~~L~~Ls~~~--~~~~~~~~~~~~~i~ 725 (1008)
..+.+..|+..|..|+..-+.+. +-...+|.++.++.++...+|..|+.+|..+...- -+..-..++-.-.+|
T Consensus 436 ~~~tK~~ALeLl~~lS~~i~de~-----~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eYlfP 510 (1431)
T KOG1240|consen 436 TIQTKLAALELLQELSTYIDDEV-----KLDRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDANIFPEYLFP 510 (1431)
T ss_pred cchhHHHHHHHHHHHhhhcchHH-----HHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccchhhHhhhhh
Confidence 46677889999999987644332 22346999999999999999999999887654111 111122233446788
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHhcCCC----ChhhHHHHHhcC-------------------------CHHHHHHHhhCC
Q 001833 726 TLVTIIQSSHNEEEIASAMGILSKLPE----VPQFTQWLLDAG-------------------------ALPIVLNFLKNG 776 (1008)
Q Consensus 726 ~Lv~lL~~~~~~~v~~~a~~~L~nL~~----~~~~~~~l~~~g-------------------------~l~~Lv~lL~~~ 776 (1008)
.|-.++.+.+...++.+-+..|+.|+. --+..+.+.+.| +-..+..+|.+
T Consensus 511 ~L~~l~~d~~~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~~~V~~~v~sLlsd- 589 (1431)
T KOG1240|consen 511 HLNHLLNDSSAQIVRIAYASNLAQLAKTAYRFLELTQELRQAGMLNDPNSETAPEQNYNTELQALHHTVEQMVSSLLSD- 589 (1431)
T ss_pred hhHhhhccCccceehhhHHhhHHHHHHHHHHHHHHHHHHHhcccccCcccccccccccchHHHHHHHHHHHHHHHHHcC-
Confidence 888888885444555555555655543 111122222221 11222233333
Q ss_pred CCCCCchhhHHHHHHHHHHHhcCCCCHHHHHHHHH----cCChHHHHHHhhcCChHHHHHHHHHHhhhhhcCCCCCCCCC
Q 001833 777 RQNDPNRFQVVENAVGALRRFTAPTNLEWQKRAAE----AGVIPKLVQLLEYGTTLTKEHAATSLARFSKNSLGLSRPIP 852 (1008)
Q Consensus 777 ~~~~~~~~~v~~~a~~aL~~L~~~~~~~~~~~l~~----~g~l~~Lv~lL~~~~~~v~~~Aa~aL~nLs~~~~~l~~~~~ 852 (1008)
+++-|+...+..|.-|+. .+.+ .=+++.|+..|.+.++.+|.+--..|.-++.-..
T Consensus 590 -----~~~~Vkr~Lle~i~~LC~--------FFGk~ksND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG------- 649 (1431)
T KOG1240|consen 590 -----SPPIVKRALLESIIPLCV--------FFGKEKSNDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVG------- 649 (1431)
T ss_pred -----CchHHHHHHHHHHHHHHH--------HhhhcccccchHHHHHHHhcCccHHHHHHHHhhccceEEEEe-------
Confidence 233344444444444443 1111 1246777777777777776544443333221000
Q ss_pred CCCcccccCCCCCCcccccCcccCcccchhHhhccchHHHHHhhcCCChhhhHHHHHHHHhhh-cccccchhhHHHHhcC
Q 001833 853 KRKGFWCFSPPPEIGCQVHGGLCGIESSFCLLEANAVRPLVRVLEDPDHGACEASLDALVTLI-EGERLQNGSKVLEDAN 931 (1008)
Q Consensus 853 ~~~g~~~~~~~~~~~c~vh~~~c~~~~~~~l~~~g~i~~Lv~lL~~~d~~v~~~al~aL~~L~-~~~~~~~~~~~i~~~~ 931 (1008)
+. -++.+.++.|.+-|.++.+.|...|+++|..|. .+--.......|
T Consensus 650 ~r----------------------------s~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ll~K~~v~~i---- 697 (1431)
T KOG1240|consen 650 WR----------------------------SVSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLGLLRKPAVKDI---- 697 (1431)
T ss_pred ee----------------------------eHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhcccchHHHHHH----
Confidence 00 134566777888999999999999999999998 442212222222
Q ss_pred chHHHHHHhcCCChHHHHHHHHHHHHHhcC
Q 001833 932 AIDRMVRFLSSPSPKLQEKALDSVERIFRL 961 (1008)
Q Consensus 932 ~i~~l~~ll~~~~~~l~~~a~~~L~~l~~~ 961 (1008)
++-+.-++-++|.-+|+.++.++..+.+.
T Consensus 698 -~~~v~PlL~hPN~WIR~~~~~iI~~~~~~ 726 (1431)
T KOG1240|consen 698 -LQDVLPLLCHPNLWIRRAVLGIIAAIARQ 726 (1431)
T ss_pred -HHhhhhheeCchHHHHHHHHHHHHHHHhh
Confidence 34455566789999999999988766443
No 164
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.41 E-value=3.8 Score=50.23 Aligned_cols=414 Identities=15% Similarity=0.156 Sum_probs=224.4
Q ss_pred ccChhHHHHHHHHHHHhccCchhhHHhhcccchHHHHHHHhcCC--ChHHHHHHHHHHHhhcC--Cc------------c
Q 001833 430 GRRIEERKLAVALLLELSTCNTLRDQIGDVQGCILLLVTMASSD--DNQASRDAQELLENLSF--SD------------D 493 (1008)
Q Consensus 430 ~~~~~~~~~A~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~--~~~~~~~a~~aL~~Ls~--~~------------~ 493 (1008)
.++...|..|-.-|..+.+ .+|.++.|.++.-++ +..++..|+--|.|.-. .+ +
T Consensus 15 d~d~~~R~~AE~~L~q~~K----------~pgFv~~lLqIi~~d~~~l~vrqaaaIYlKN~I~~~W~~~~~~g~~~~I~e 84 (1010)
T KOG1991|consen 15 DSDAKERKAAEQQLNQLEK----------QPGFVSSLLQIIMDDGVPLPVRQAAAIYLKNKITKSWSSHEAPGRPFGIPE 84 (1010)
T ss_pred CCChHHHHHHHHHHHHhhc----------CCcHHHHHHHHHHccCCchhHHHHHHHHHHHHHHhcCCccCCCCCcCCCCh
Confidence 3455667777777776655 478888888887644 44678888889999831 11 1
Q ss_pred cHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHHcCCh-hhHHHHhhcCcHHHHHHHhccCCHHHHHHHHHHHHHhhC
Q 001833 494 NVVQMAKANYFKHLLQRLSAGPESVKMRMATTLAEMELTD-HHKASLLEGNVLGPLLHLVSRGDIQMKKVAVKALRNLSS 572 (1008)
Q Consensus 494 n~~~i~~~g~v~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~~-~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~ 572 (1008)
.-+..++..+++.+ -.+++-+|.+.-.+|..+-.++ ..+. .|.++..-.+|++++...--.|+-+|..|+.
T Consensus 85 ~dk~~irenIl~~i----v~~p~~iRvql~~~l~~Ii~~D~p~~W----p~l~d~i~~~Lqs~~~~~vy~aLl~l~qL~k 156 (1010)
T KOG1991|consen 85 EDKAVIRENILETI----VQVPELIRVQLTACLNTIIKADYPEQW----PGLLDKIKNLLQSQDANHVYGALLCLYQLFK 156 (1010)
T ss_pred HHHHHHHHHHHHHH----HhCchHHHHHHHHHHHHHHhcCCcccc----hhHHHHHHHHhcCcchhhHHHHHHHHHHHHH
Confidence 23334444444444 3445667777667776653333 2221 4677778889999998888999999999995
Q ss_pred CC-----chhHHHHh--cCChHHHHHH----hcccCCCCcchHHHHHHHHHHHhccccccccCCcccccccchhH----H
Q 001833 573 VP-----QNGLQMIK--EGAVGPLVDL----LLHHSSSSSSLREETATAIMHLAVSTMYQESSQTPVTLLESDKE----I 637 (1008)
Q Consensus 573 ~~-----~~~~~i~~--~G~v~~Ll~l----l~~~~~~~~~~~~~a~~~L~nLa~~~~~~~~~~~~~~~l~~~~~----i 637 (1008)
.. +.|+.+.. ....|.++++ +..++..+..++...+.+.+.++....... +...+. +
T Consensus 157 ~ye~k~~eeR~~l~~~v~~~fP~il~~~~~ll~~~s~~s~el~klIlKifks~~~~~LP~~--------L~~~~~f~~W~ 228 (1010)
T KOG1991|consen 157 TYEWKKDEERQPLGEAVEELFPDILQIFNGLLSQESYQSVELQKLILKIFKSLIYYELPLE--------LSAPETFTSWM 228 (1010)
T ss_pred HHhhccccccccHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHhCCHH--------hhCchhHHHHH
Confidence 32 23333321 1245555544 444444456677777777777777554333 122222 3
Q ss_pred HHHHHhhccC--------ChH---------HHHHHHHHHHHhccC---C-----ChhhHHHHhhh---cCChHHHHHhhc
Q 001833 638 FMLFSLINLT--------GPN---------VQQRILQTFNALCRS---P-----SAGNIKTTLTQ---CSAIPVLVQLCE 689 (1008)
Q Consensus 638 ~~L~~ll~~~--------~~~---------v~~~al~aL~~L~~~---~-----~~~~~~~~i~e---~~~i~~Lv~ll~ 689 (1008)
..++.+++.+ +|+ .+.+|+..|..++.. + +..+..+.+.. .++...+++.+.
T Consensus 229 ~l~l~i~~rpvP~E~l~~d~e~R~~~~wwK~KKWa~~~L~Rlf~Ryg~~~~~~~~y~~Fa~~f~~n~~~~ile~~lk~l~ 308 (1010)
T KOG1991|consen 229 ELFLSILNRPVPVEVLSLDPEDRSSWPWWKCKKWALHILNRLFERYGSPSLVVPEYKEFAQMFLKNFAQGILEVFLKILE 308 (1010)
T ss_pred HHHHHHHcCCCChhcccCChhhcccccchhhHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445432 222 455788888887752 1 11111122211 344555555553
Q ss_pred c------CChhHHHHHHHHHHHhccCCChhHHHhhhccc---chHHH-HHHhcCC-CCHH---------H----------
Q 001833 690 H------DNENVRANAVKLFCCLVDDGDEAIIREHVGQK---CLETL-VTIIQSS-HNEE---------E---------- 739 (1008)
Q Consensus 690 ~------~~~~v~~~a~~~L~~Ls~~~~~~~~~~~~~~~---~i~~L-v~lL~~~-~~~~---------v---------- 739 (1008)
. -++++...+...+.+... ....-..++.. .+... .-++.-. ++.+ +
T Consensus 309 ~~~~~~yls~rvl~~~l~fl~~~Vs---~~~twkll~PHl~~ii~~vIFPlmc~~d~deelwe~DP~EYiR~~~Di~ed~ 385 (1010)
T KOG1991|consen 309 QWRQQLYLSDRVLYYLLNFLEQCVS---HASTWKLLKPHLQVIIQDVIFPLMCFNDEDEELWEEDPYEYIRKKFDIFEDG 385 (1010)
T ss_pred HHHhcccCCHHHHHHHHHHHHHhcc---HHHHHHHhhhHHHHHHHHhhhhhcCCCcccHHHHhcCHHHHHHhcCchhccc
Confidence 2 145666666665555441 11111111110 00000 0111111 1110 1
Q ss_pred ---HHHHHHHHhcCCC--ChhhHHHHHhcCCHHHHHHHhhC--CCCCCCchhhHHHHHHHHHHHhcCC---CCH--HHHH
Q 001833 740 ---IASAMGILSKLPE--VPQFTQWLLDAGALPIVLNFLKN--GRQNDPNRFQVVENAVGALRRFTAP---TNL--EWQK 807 (1008)
Q Consensus 740 ---~~~a~~~L~nL~~--~~~~~~~l~~~g~l~~Lv~lL~~--~~~~~~~~~~v~~~a~~aL~~L~~~---~~~--~~~~ 807 (1008)
..+|+..+-.++. .++. =.|.++.++..+.. .....+.++.-++.|+.++++++.- ..+ +..+
T Consensus 386 ~sp~~Aa~~~l~~~~~KR~ke~-----l~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE 460 (1010)
T KOG1991|consen 386 YSPDTAALDFLTTLVSKRGKET-----LPKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQME 460 (1010)
T ss_pred CCCcHHHHHHHHHHHHhcchhh-----hhhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHHH
Confidence 1234444444333 1111 13456777777774 1112335667788999999988742 011 2233
Q ss_pred HHHHcCChHHHHHHhhcCChHHHHHHHHHHhhhhhcCCCCCCCCCCCCcccccCCCCCCcccccCcccCcccchhHhhcc
Q 001833 808 RAAEAGVIPKLVQLLEYGTTLTKEHAATSLARFSKNSLGLSRPIPKRKGFWCFSPPPEIGCQVHGGLCGIESSFCLLEAN 887 (1008)
Q Consensus 808 ~l~~~g~l~~Lv~lL~~~~~~v~~~Aa~aL~nLs~~~~~l~~~~~~~~g~~~~~~~~~~~c~vh~~~c~~~~~~~l~~~g 887 (1008)
.+ +++.+.-.+++.---+|.+|||.++.++.-. +. .. -.-..
T Consensus 461 ~f----lv~hVfP~f~s~~g~Lrarac~vl~~~~~~d--f~-----d~---------------------------~~l~~ 502 (1010)
T KOG1991|consen 461 YF----LVNHVFPEFQSPYGYLRARACWVLSQFSSID--FK-----DP---------------------------NNLSE 502 (1010)
T ss_pred HH----HHHHhhHhhcCchhHHHHHHHHHHHHHHhcc--CC-----Ch---------------------------HHHHH
Confidence 33 3344444556767789999999999998211 00 00 01123
Q ss_pred chHHHHHhhc-CCChhhhHHHHHHHHhhh
Q 001833 888 AVRPLVRVLE-DPDHGACEASLDALVTLI 915 (1008)
Q Consensus 888 ~i~~Lv~lL~-~~d~~v~~~al~aL~~L~ 915 (1008)
++..-..+|. +.+-.|+..|.-||..++
T Consensus 503 ale~t~~~l~~d~~lPV~VeAalALq~fI 531 (1010)
T KOG1991|consen 503 ALELTHNCLLNDNELPVRVEAALALQSFI 531 (1010)
T ss_pred HHHHHHHHhccCCcCchhhHHHHHHHHHH
Confidence 4555566666 666779999999999999
No 165
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=96.38 E-value=0.15 Score=62.73 Aligned_cols=144 Identities=18% Similarity=0.163 Sum_probs=91.7
Q ss_pred HHHHhhccCChHHHHHHHHHHHHhccCCChhhHHHHhhhc-CChHHHHHhhccCChhHHHHHHHHHHHhccCCChhHHHh
Q 001833 639 MLFSLINLTGPNVQQRILQTFNALCRSPSAGNIKTTLTQC-SAIPVLVQLCEHDNENVRANAVKLFCCLVDDGDEAIIRE 717 (1008)
Q Consensus 639 ~L~~ll~~~~~~v~~~al~aL~~L~~~~~~~~~~~~i~e~-~~i~~Lv~ll~~~~~~v~~~a~~~L~~Ls~~~~~~~~~~ 717 (1008)
....++....+-++...+..+.-||..=. ..+.. -.++.|+.+|.+.+..+|.+=...+.-++-.-.. .
T Consensus 582 ~v~sLlsd~~~~Vkr~Lle~i~~LC~FFG------k~ksND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG~----r 651 (1431)
T KOG1240|consen 582 MVSSLLSDSPPIVKRALLESIIPLCVFFG------KEKSNDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVGW----R 651 (1431)
T ss_pred HHHHHHcCCchHHHHHHHHHHHHHHHHhh------hcccccchHHHHHHHhcCccHHHHHHHHhhccceEEEEee----e
Confidence 34556666777888888888888886310 01111 2478899999999888877655544433311011 1
Q ss_pred hhcccchHHHHHHhcCCCCHHHHHHHHHHHhcCCCChhhHHHHHhcCCHHHHHHHhhCCCCCCCchhhHHHHHHHHHHHh
Q 001833 718 HVGQKCLETLVTIIQSSHNEEEIASAMGILSKLPEVPQFTQWLLDAGALPIVLNFLKNGRQNDPNRFQVVENAVGALRRF 797 (1008)
Q Consensus 718 ~~~~~~i~~Lv~lL~~~~~~~v~~~a~~~L~nL~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~v~~~a~~aL~~L 797 (1008)
-.+...+|.|.+-|.++ ++.|...|+++|..|....-.++.. -...++.+.-+|.+ ++..+|..++..+...
T Consensus 652 s~seyllPLl~Q~ltD~-EE~Viv~aL~~ls~Lik~~ll~K~~-v~~i~~~v~PlL~h------PN~WIR~~~~~iI~~~ 723 (1431)
T KOG1240|consen 652 SVSEYLLPLLQQGLTDG-EEAVIVSALGSLSILIKLGLLRKPA-VKDILQDVLPLLCH------PNLWIRRAVLGIIAAI 723 (1431)
T ss_pred eHHHHHHHHHHHhccCc-chhhHHHHHHHHHHHHHhcccchHH-HHHHHHhhhhheeC------chHHHHHHHHHHHHHH
Confidence 12446788888888884 4568888999888877622222111 11234555666777 7889999999999877
Q ss_pred cCC
Q 001833 798 TAP 800 (1008)
Q Consensus 798 ~~~ 800 (1008)
...
T Consensus 724 ~~~ 726 (1431)
T KOG1240|consen 724 ARQ 726 (1431)
T ss_pred Hhh
Confidence 653
No 166
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=96.30 E-value=2.3 Score=49.20 Aligned_cols=358 Identities=18% Similarity=0.167 Sum_probs=189.5
Q ss_pred HHHHHHHhccCCH---HHHHHHHHHHHHhhCCCchhHHHHhcCChHHHHHHhcccCCCCcchHHHHHHHHHHHhcccccc
Q 001833 545 LGPLLHLVSRGDI---QMKKVAVKALRNLSSVPQNGLQMIKEGAVGPLVDLLLHHSSSSSSLREETATAIMHLAVSTMYQ 621 (1008)
Q Consensus 545 i~~Lv~lL~~~~~---~~~~~A~~aL~~L~~~~~~~~~i~~~G~v~~Ll~ll~~~~~~~~~~~~~a~~~L~nLa~~~~~~ 621 (1008)
+|.+...|.+.++ ...+..+.+|..+|..+.--..++. ..+..+-.....+. .......++.+|.++.......
T Consensus 1 ~p~ll~~Lpd~~~~~~~~~~~~L~~l~~ls~~~~i~~~~~~-~ll~kl~~~~~~~~--~~~~~~~il~tl~~~~~~~~~~ 77 (415)
T PF12460_consen 1 LPALLALLPDSDSSTDSNYERILEALAALSTSPQILETLSI-RLLNKLSIVCQSES--SSDYCHAILSTLQSLLEKKQED 77 (415)
T ss_pred CchHHhhCCCCCCcchhHHHHHHHHHHHHHCChhHHHHHHH-HHHHHHHHHhcCCC--ChHHHHHHHHHHHHHHHhcccc
Confidence 3667777766544 6778899999999986654444332 23333333333222 2456667777777776644332
Q ss_pred ccCCcccccccchhHHHHHHHhhccC-------ChHHHHHHHHHHHHhccCCChhhHHHHhhhcCChHHHHHhhc-----
Q 001833 622 ESSQTPVTLLESDKEIFMLFSLINLT-------GPNVQQRILQTFNALCRSPSAGNIKTTLTQCSAIPVLVQLCE----- 689 (1008)
Q Consensus 622 ~~~~~~~~~l~~~~~i~~L~~ll~~~-------~~~v~~~al~aL~~L~~~~~~~~~~~~i~e~~~i~~Lv~ll~----- 689 (1008)
.. ............++.++.+.... ++.+...+...+..+.+.-+...- +.+ +..+..+..
T Consensus 78 ~~-~~~~~~y~~~~lv~~l~~~~~~~~~~~~~~~~~~L~~~~~l~~~iv~~l~~~~q-~~~-----~~~~~~lf~~~~~~ 150 (415)
T PF12460_consen 78 KQ-FEDNSWYFHRILVPRLFELALQASDQSSDLDDRVLELLSRLINLIVRSLSPEKQ-QEI-----LDELYSLFLSPKSF 150 (415)
T ss_pred cc-cchHHHHHHhHHHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHhCCHHHH-HHH-----HHHHHHHHcccccc
Confidence 20 00111222233666676665421 134444555555555554322221 112 233333332
Q ss_pred -----cCC--hhHHHH----HHHHHHHhccCCChhHHHhhhcccchHHHHHHhcCCCCHHHHHHHHHHHhcCCC---Chh
Q 001833 690 -----HDN--ENVRAN----AVKLFCCLVDDGDEAIIREHVGQKCLETLVTIIQSSHNEEEIASAMGILSKLPE---VPQ 755 (1008)
Q Consensus 690 -----~~~--~~v~~~----a~~~L~~Ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~v~~~a~~~L~nL~~---~~~ 755 (1008)
..+ .+.... ...++..+-.... ... -...+..++.+..+..+...+..++.+++.|.. +.+
T Consensus 151 ~~~~~~~~~~~~~~~~~~~l~~~il~~l~~~~~---~~~--~~~ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~ 225 (415)
T PF12460_consen 151 SPFQPSSSTISEQQSRLVILFSAILCSLRKDVS---LPD--LEELLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDDD 225 (415)
T ss_pred CCCCccccccccccccHHHHHHHHHHcCCcccC---ccC--HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCChh
Confidence 111 011111 2233344431111 111 113677888887777667788888888887776 122
Q ss_pred hHHHHHhcCCHHHHHHHhhCCCCCCCchhhHHHHHHHHHHHhcC----CCCHHHHHHHHHcCChHHHHHHhhcCChHHHH
Q 001833 756 FTQWLLDAGALPIVLNFLKNGRQNDPNRFQVVENAVGALRRFTA----PTNLEWQKRAAEAGVIPKLVQLLEYGTTLTKE 831 (1008)
Q Consensus 756 ~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~v~~~a~~aL~~L~~----~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~v~~ 831 (1008)
... ..+..+..-+.. . .....+..+..++.+++. ..++... ..+..|+++|.+ +.+..
T Consensus 226 ~l~-----~~l~~~~~~~~~-~----~~~~~~~~~~~~~~Wi~KaLv~R~~~~~~------~~~~~L~~lL~~--~~~g~ 287 (415)
T PF12460_consen 226 DLD-----EFLDSLLQSISS-S----EDSELRPQALEILIWITKALVMRGHPLAT------ELLDKLLELLSS--PELGQ 287 (415)
T ss_pred hHH-----HHHHHHHhhhcc-c----CCcchhHHHHHHHHHHHHHHHHcCCchHH------HHHHHHHHHhCC--hhhHH
Confidence 111 122223332211 1 233344455555544443 2233322 235667777765 77889
Q ss_pred HHHHHHhhhhhcCCCCCCCCCCCCcccccCCCCCCcccccCcccCcccchhHhhc----cchHHHHHhhcCCChhhhHHH
Q 001833 832 HAATSLARFSKNSLGLSRPIPKRKGFWCFSPPPEIGCQVHGGLCGIESSFCLLEA----NAVRPLVRVLEDPDHGACEAS 907 (1008)
Q Consensus 832 ~Aa~aL~nLs~~~~~l~~~~~~~~g~~~~~~~~~~~c~vh~~~c~~~~~~~l~~~----g~i~~Lv~lL~~~d~~v~~~a 907 (1008)
.|+.++.-+....+.+-.. .. ..++.-|.+. ..++.|++-.+..+...+..-
T Consensus 288 ~aA~~f~il~~d~~~~l~~---~~---------------------~a~vklLykQR~F~~~~p~L~~~~~~~~~~~k~~y 343 (415)
T PF12460_consen 288 QAAKAFGILLSDSDDVLNK---EN---------------------HANVKLLYKQRFFTQVLPKLLEGFKEADDEIKSNY 343 (415)
T ss_pred HHHHHHhhHhcCcHHhcCc---cc---------------------cchhhhHHhHHHHHHHHHHHHHHHhhcChhhHHHH
Confidence 9999999988653321111 00 0111122222 357778888887777788999
Q ss_pred HHHHHhhhcccccchhhHHHHh-cCchHHHHHHhcCCChHHHHHHHHHHHHHhcCh
Q 001833 908 LDALVTLIEGERLQNGSKVLED-ANAIDRMVRFLSSPSPKLQEKALDSVERIFRLP 962 (1008)
Q Consensus 908 l~aL~~L~~~~~~~~~~~~i~~-~~~i~~l~~ll~~~~~~l~~~a~~~L~~l~~~~ 962 (1008)
+.||..++... +....+.+ ...++.+.+-+..+|++++..++.++..+..+.
T Consensus 344 L~ALs~ll~~v---P~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~ 396 (415)
T PF12460_consen 344 LTALSHLLKNV---PKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEA 396 (415)
T ss_pred HHHHHHHHhhC---CHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcC
Confidence 99999999211 21112222 234777888888899999999999998887664
No 167
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=96.29 E-value=0.031 Score=58.96 Aligned_cols=180 Identities=17% Similarity=0.180 Sum_probs=110.6
Q ss_pred chhhHHHHHHHHHHHhcCCC-CHHHHHHHHH--cCChHHHHHHhhcCChHHHHHHHHHHhhhhhcCCCCCCCCCCCCccc
Q 001833 782 NRFQVVENAVGALRRFTAPT-NLEWQKRAAE--AGVIPKLVQLLEYGTTLTKEHAATSLARFSKNSLGLSRPIPKRKGFW 858 (1008)
Q Consensus 782 ~~~~v~~~a~~aL~~L~~~~-~~~~~~~l~~--~g~l~~Lv~lL~~~~~~v~~~Aa~aL~nLs~~~~~l~~~~~~~~g~~ 858 (1008)
.+...+..++.-|..+..+. ..+....+.+ ..+++.+...+.+....+...|+.++..++..-.
T Consensus 19 ~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~------------- 85 (228)
T PF12348_consen 19 SDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLG------------- 85 (228)
T ss_dssp SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHG-------------
T ss_pred cCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHh-------------
Confidence 56778888888888887752 1222222211 1566778888888788899999999999985321
Q ss_pred ccCCCCCCcccccCcccCcccchhHhhccchHHHHHhhcCCChhhhHHHHHHHHhhhcccccchhhHHHHhcCchHHHHH
Q 001833 859 CFSPPPEIGCQVHGGLCGIESSFCLLEANAVRPLVRVLEDPDHGACEASLDALVTLIEGERLQNGSKVLEDANAIDRMVR 938 (1008)
Q Consensus 859 ~~~~~~~~~c~vh~~~c~~~~~~~l~~~g~i~~Lv~lL~~~d~~v~~~al~aL~~L~~~~~~~~~~~~i~~~~~i~~l~~ 938 (1008)
..+.-.-...+++|+..+.+++..++..|..+|..+.... ...... .+..+..
T Consensus 86 --------------------~~~~~~~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~--~~~~~~-----~~~~l~~ 138 (228)
T PF12348_consen 86 --------------------SHFEPYADILLPPLLKKLGDSKKFIREAANNALDAIIESC--SYSPKI-----LLEILSQ 138 (228)
T ss_dssp --------------------GGGHHHHHHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS---H--HH-----HHHHHHH
T ss_pred --------------------HhHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHC--CcHHHH-----HHHHHHH
Confidence 1233233457889999999999999999999999998211 001111 1455666
Q ss_pred HhcCCChHHHHHHHHHHHHHhcChH-HHHHhc-----cccCchhhhhcccCCchhhHHHHHHHHHHhcc
Q 001833 939 FLSSPSPKLQEKALDSVERIFRLPE-FKQKYG-----KSAQMPLVDLTQRGNSSMKSLSARVLAHLNVL 1001 (1008)
Q Consensus 939 ll~~~~~~l~~~a~~~L~~l~~~~~-~~~~~~-----~~~~~~Lv~l~~~~~~~~~~~Aa~~L~~L~~~ 1001 (1008)
...++++.+|..+...+..++..-. -...+. ......+...+.++++++|..|..++..+...
T Consensus 139 ~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~ 207 (228)
T PF12348_consen 139 GLKSKNPQVREECAEWLAIILEKWGSDSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSH 207 (228)
T ss_dssp HTT-S-HHHHHHHHHHHHHHHTT-----GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHccchHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Confidence 7789999999999998888765433 111111 12235688899999999999999999988654
No 168
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.27 E-value=4 Score=50.95 Aligned_cols=142 Identities=18% Similarity=0.225 Sum_probs=109.4
Q ss_pred CHHHHHHHhhCCCCCCCchhhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHHHhh-cCChHHHHHHHHHHhhhhhc
Q 001833 765 ALPIVLNFLKNGRQNDPNRFQVVENAVGALRRFTAPTNLEWQKRAAEAGVIPKLVQLLE-YGTTLTKEHAATSLARFSKN 843 (1008)
Q Consensus 765 ~l~~Lv~lL~~~~~~~~~~~~v~~~a~~aL~~L~~~~~~~~~~~l~~~g~l~~Lv~lL~-~~~~~v~~~Aa~aL~nLs~~ 843 (1008)
+.|.+++..+.+... .++.++.+|.-+|++|..- +.++.. .-+|.|+..+. +++|.+|.++..+++.|+..
T Consensus 920 f~piv~e~c~n~~~~--sdp~Lq~AAtLaL~klM~i-Sa~fce-----s~l~llftimeksp~p~IRsN~VvalgDlav~ 991 (1251)
T KOG0414|consen 920 FAPIVVEGCRNPGLF--SDPELQAAATLALGKLMCI-SAEFCE-----SHLPLLFTIMEKSPSPRIRSNLVVALGDLAVR 991 (1251)
T ss_pred HHHHHHHHhcCCCcC--CCHHHHHHHHHHHHHHhhh-hHHHHH-----HHHHHHHHHHhcCCCceeeecchheccchhhh
Confidence 567777777664443 4688999999999999875 444442 24799999998 78999999999999999965
Q ss_pred CCCCCCCCCCCCcccccCCCCCCcccccCcccCcccchhHhhccchHHHHHhhcCCChhhhHHHHHHHHhhh-cccccch
Q 001833 844 SLGLSRPIPKRKGFWCFSPPPEIGCQVHGGLCGIESSFCLLEANAVRPLVRVLEDPDHGACEASLDALVTLI-EGERLQN 922 (1008)
Q Consensus 844 ~~~l~~~~~~~~g~~~~~~~~~~~c~vh~~~c~~~~~~~l~~~g~i~~Lv~lL~~~d~~v~~~al~aL~~L~-~~~~~~~ 922 (1008)
-+++..| .-+-|.+.|.+.++.||..|+-.|.+|+ .+
T Consensus 992 fpnlie~-------------------------------------~T~~Ly~rL~D~~~~vRkta~lvlshLILnd----- 1029 (1251)
T KOG0414|consen 992 FPNLIEP-------------------------------------WTEHLYRRLRDESPSVRKTALLVLSHLILND----- 1029 (1251)
T ss_pred cccccch-------------------------------------hhHHHHHHhcCccHHHHHHHHHHHHHHHHhh-----
Confidence 5543332 3466788999999999999999999998 43
Q ss_pred hhHHHHhcCchHHHHHHhcCCChHHHHHHHHHHHHHh
Q 001833 923 GSKVLEDANAIDRMVRFLSSPSPKLQEKALDSVERIF 959 (1008)
Q Consensus 923 ~~~~i~~~~~i~~l~~ll~~~~~~l~~~a~~~L~~l~ 959 (1008)
++.--|-+.....++.+++++++..|-..+..+.
T Consensus 1030 ---miKVKGql~eMA~cl~D~~~~IsdlAk~FF~Els 1063 (1251)
T KOG0414|consen 1030 ---MIKVKGQLSEMALCLEDPNAEISDLAKSFFKELS 1063 (1251)
T ss_pred ---hhHhcccHHHHHHHhcCCcHHHHHHHHHHHHHhh
Confidence 3445566777888889999999988886665443
No 169
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=96.24 E-value=0.21 Score=52.05 Aligned_cols=238 Identities=16% Similarity=0.212 Sum_probs=143.5
Q ss_pred ChhHHHHHHHHHHHhccCCChhHHHhh-hcccchHHHHHHhc-------CCC-CH---HHHHHHHHHHhcCCCChhhHHH
Q 001833 692 NENVRANAVKLFCCLVDDGDEAIIREH-VGQKCLETLVTIIQ-------SSH-NE---EEIASAMGILSKLPEVPQFTQW 759 (1008)
Q Consensus 692 ~~~v~~~a~~~L~~Ls~~~~~~~~~~~-~~~~~i~~Lv~lL~-------~~~-~~---~v~~~a~~~L~nL~~~~~~~~~ 759 (1008)
+++.|..|+.-|+.-. ...++....+ ...|.+..|++-+- .+. .. .-...|+..|-.++++++.+..
T Consensus 8 ~~~~Re~Al~eLsk~r-~~~~~La~~LW~s~G~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAshpetr~~ 86 (262)
T PF04078_consen 8 NPETRENALLELSKKR-ESFPDLAPLLWHSFGTIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVASHPETRMP 86 (262)
T ss_dssp SHHHHHHHHHHHHHTC-CC-TTHHHHHHTSTTHHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH-TTTHHH
T ss_pred CcchHHHHHHHHHHhh-hcccchhHHHHcCCChHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHcChHHHHH
Confidence 5667777766666554 2222222222 33466666665332 211 11 2234556666666779999999
Q ss_pred HHhcCCHHHHHHHhhCCCCCCCchhhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHHHhhcCChHHHHHHHHHHhh
Q 001833 760 LLDAGALPIVLNFLKNGRQNDPNRFQVVENAVGALRRFTAPTNLEWQKRAAEAGVIPKLVQLLEYGTTLTKEHAATSLAR 839 (1008)
Q Consensus 760 l~~~g~l~~Lv~lL~~~~~~~~~~~~v~~~a~~aL~~L~~~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~v~~~Aa~aL~n 839 (1008)
++++...-.|.-+|...... ++-+.+|-.++++++.+....+++....+.+.+++|..+..+..|+...|.-|...+.+
T Consensus 87 Fl~a~iplyLyPfL~tt~k~-r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~GselSKtvAtfIlqK 165 (262)
T PF04078_consen 87 FLKAHIPLYLYPFLNTTSKT-RPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFGSELSKTVATFILQK 165 (262)
T ss_dssp HHHTTGGGGGHHHHH----S-HHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHHcCchhhehhhhhccccc-cccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 99999887777777764322 24578999999999999997788999999999999999999999999999999999999
Q ss_pred hhhcCCCCCCCCCCCCcccccCCCCCCcccccCcccCcccchhHhhccchHHHHHhhcCCChhhhHHHHHHHHhhhcccc
Q 001833 840 FSKNSLGLSRPIPKRKGFWCFSPPPEIGCQVHGGLCGIESSFCLLEANAVRPLVRVLEDPDHGACEASLDALVTLIEGER 919 (1008)
Q Consensus 840 Ls~~~~~l~~~~~~~~g~~~~~~~~~~~c~vh~~~c~~~~~~~l~~~g~i~~Lv~lL~~~d~~v~~~al~aL~~L~~~~~ 919 (1008)
+-.+..+ +.-.++ .++=..+....|.+++
T Consensus 166 IL~dd~G------------------------------------------L~yiC~-----t~eRf~av~~vL~~mV---- 194 (262)
T PF04078_consen 166 ILLDDVG------------------------------------------LNYICQ-----TAERFFAVAMVLNKMV---- 194 (262)
T ss_dssp HHHSHHH------------------------------------------HHHHTS-----SHHHHHHHHHHHHHHH----
T ss_pred HHcchhH------------------------------------------HHHHhc-----CHHHHHHHHHHHHHHH----
Confidence 8743321 221111 2222333444455544
Q ss_pred cchhhHHHHhcCchHHHHHHhcCCChHHHHHHHHHHHHHhcChHHHHHhccccCchhhh----hcccCCchhhHHHHHHH
Q 001833 920 LQNGSKVLEDANAIDRMVRFLSSPSPKLQEKALDSVERIFRLPEFKQKYGKSAQMPLVD----LTQRGNSSMKSLSARVL 995 (1008)
Q Consensus 920 ~~~~~~~i~~~~~i~~l~~ll~~~~~~l~~~a~~~L~~l~~~~~~~~~~~~~~~~~Lv~----l~~~~~~~~~~~Aa~~L 995 (1008)
..+...+++++-+..+.+-.++..++..+......-+..|-+ -+-.+|+.+++--.+.+
T Consensus 195 -----------------~~l~~~pS~RLLKhIIrCYlRLsdnprar~aL~~~LP~~Lrd~~f~~~l~~D~~~k~~l~qLl 257 (262)
T PF04078_consen 195 -----------------EQLVKQPSPRLLKHIIRCYLRLSDNPRAREALRQCLPDQLRDGTFSNILKDDPSTKRWLQQLL 257 (262)
T ss_dssp -----------------HHHHHS--HHHHHHHHHHHHHHTTSTTHHHHHHHHS-GGGTSSTTTTGGCS-HHHHHHHHHHH
T ss_pred -----------------HHHccCCChhHHHHHHHHHHHHccCHHHHHHHHHhCcHHHhcHHHHHHHhcCHHHHHHHHHHH
Confidence 122345666777777777777777666655554322222221 12224777888777777
Q ss_pred HHHh
Q 001833 996 AHLN 999 (1008)
Q Consensus 996 ~~L~ 999 (1008)
.+++
T Consensus 258 ~nl~ 261 (262)
T PF04078_consen 258 SNLN 261 (262)
T ss_dssp HHTT
T ss_pred HHhc
Confidence 7664
No 170
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=96.23 E-value=0.074 Score=56.05 Aligned_cols=109 Identities=18% Similarity=0.138 Sum_probs=68.7
Q ss_pred cchHHHHHHHhcCCChHHHHHHHHHHHhhcCCcccHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHHcCChh-hHHH
Q 001833 460 QGCILLLVTMASSDDNQASRDAQELLENLSFSDDNVVQMAKANYFKHLLQRLSAGPESVKMRMATTLAEMELTDH-HKAS 538 (1008)
Q Consensus 460 ~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~~~n~~~i~~~g~v~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~~~-~k~~ 538 (1008)
...+|.|+..+.+....++..|..+|..++.+-.....+ .++.+.....+.++.+|..++..|..+...-. ....
T Consensus 93 ~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~~----~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~ 168 (228)
T PF12348_consen 93 DILLPPLLKKLGDSKKFIREAANNALDAIIESCSYSPKI----LLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSV 168 (228)
T ss_dssp HHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H--HH----HHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GG
T ss_pred HHHHHHHHHHHccccHHHHHHHHHHHHHHHHHCCcHHHH----HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhh
Confidence 346777888887777888888888888886543311111 13445556777889999999888887733222 1111
Q ss_pred Hhh----cCcHHHHHHHhccCCHHHHHHHHHHHHHhhC
Q 001833 539 LLE----GNVLGPLLHLVSRGDIQMKKVAVKALRNLSS 572 (1008)
Q Consensus 539 i~~----~g~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~ 572 (1008)
+.. ..+++.+...+.++++.+|+.|-.++..+..
T Consensus 169 l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~ 206 (228)
T PF12348_consen 169 LQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYS 206 (228)
T ss_dssp G--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHH
T ss_pred hcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
Confidence 211 3467888899999999999999999999964
No 171
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.18 E-value=0.85 Score=57.90 Aligned_cols=321 Identities=14% Similarity=0.140 Sum_probs=164.5
Q ss_pred HHHHHHHHHHHHHHcCChhhHHHHhhcCcHHHHHHHhccCCHHHHHHHHHHHHHhh-CCCchhHHHHhcCChHHHHHHhc
Q 001833 516 ESVKMRMATTLAEMELTDHHKASLLEGNVLGPLLHLVSRGDIQMKKVAVKALRNLS-SVPQNGLQMIKEGAVGPLVDLLL 594 (1008)
Q Consensus 516 ~~~~~~aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~~L~-~~~~~~~~i~~~G~v~~Ll~ll~ 594 (1008)
-..|.-||-.++.++....-+..-.-...||.|.+.=-++++.++. |..-+++.- .++. .+++.-.-..+=+++.
T Consensus 971 wnSk~GaAfGf~~i~~~a~~kl~p~l~kLIPrLyRY~yDP~~~Vq~-aM~sIW~~Li~D~k---~~vd~y~neIl~eLL~ 1046 (1702)
T KOG0915|consen 971 WNSKKGAAFGFGAIAKQAGEKLEPYLKKLIPRLYRYQYDPDKKVQD-AMTSIWNALITDSK---KVVDEYLNEILDELLV 1046 (1702)
T ss_pred hhcccchhhchHHHHHHHHHhhhhHHHHhhHHHhhhccCCcHHHHH-HHHHHHHHhccChH---HHHHHHHHHHHHHHHH
Confidence 3456667777777765442222222234677777777777877765 455555554 4333 3333322233333443
Q ss_pred ccCCCCcchHHHHHHHHHHHhccccccccCCcccccccchhHHHHHHHhhccCChHHHH---HHHHHHHHhccCC----C
Q 001833 595 HHSSSSSSLREETATAIMHLAVSTMYQESSQTPVTLLESDKEIFMLFSLINLTGPNVQQ---RILQTFNALCRSP----S 667 (1008)
Q Consensus 595 ~~~~~~~~~~~~a~~~L~nLa~~~~~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~---~al~aL~~L~~~~----~ 667 (1008)
.-++..=.+++.++-+|..|-.+.+.... ..- -...+..+++.++.-.+.+|+ .++++|..+|... .
T Consensus 1047 ~lt~kewRVReasclAL~dLl~g~~~~~~----~e~--lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~d~~~ 1120 (1702)
T KOG0915|consen 1047 NLTSKEWRVREASCLALADLLQGRPFDQV----KEK--LPELWEAAFRVMDDIKESVREAADKAARALSKLCVRICDVTN 1120 (1702)
T ss_pred hccchhHHHHHHHHHHHHHHHcCCChHHH----HHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCC
Confidence 32222236899999999999876543221 000 013344444444433444554 3556666665421 1
Q ss_pred hhhHHHHhhhcCChHHHHHhhc-----cCChhHHHHHHHHHHHhccCCChhHHHhhhcccchHHHHHHhcCCCCHHHHHH
Q 001833 668 AGNIKTTLTQCSAIPVLVQLCE-----HDNENVRANAVKLFCCLVDDGDEAIIREHVGQKCLETLVTIIQSSHNEEEIAS 742 (1008)
Q Consensus 668 ~~~~~~~i~e~~~i~~Lv~ll~-----~~~~~v~~~a~~~L~~Ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~v~~~ 742 (1008)
+...+ .++..++.++- +.-+++|..++..+..|+. ..+..+..+ -...++.|.+....-++...-.-
T Consensus 1121 ~~~~~------~~l~~iLPfLl~~gims~v~evr~~si~tl~dl~K-ssg~~lkP~-~~~LIp~ll~~~s~lE~~vLnYl 1192 (1702)
T KOG0915|consen 1121 GAKGK------EALDIILPFLLDEGIMSKVNEVRRFSIGTLMDLAK-SSGKELKPH-FPKLIPLLLNAYSELEPQVLNYL 1192 (1702)
T ss_pred cccHH------HHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHH-hchhhhcch-hhHHHHHHHHHccccchHHHHHH
Confidence 11111 12333333332 4458999999999999983 333333222 22455666665554333222222
Q ss_pred HHHHHhcCCCChhhHHHHHhcCCHHHHHHHhhCCCCCCCchhhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHHHh
Q 001833 743 AMGILSKLPEVPQFTQWLLDAGALPIVLNFLKNGRQNDPNRFQVVENAVGALRRFTAPTNLEWQKRAAEAGVIPKLVQLL 822 (1008)
Q Consensus 743 a~~~L~nL~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~v~~~a~~aL~~L~~~~~~~~~~~l~~~g~l~~Lv~lL 822 (1008)
++++ -|. +..++..+..-... ..++-+..=.++.++ +... -...+|.+.+++
T Consensus 1193 s~r~-~~~-----------e~ealDt~R~s~ak-------sspmmeTi~~ci~~i----D~~v-----Leelip~l~el~ 1244 (1702)
T KOG0915|consen 1193 SLRL-INI-----------ETEALDTLRASAAK-------SSPMMETINKCINYI----DISV-----LEELIPRLTELV 1244 (1702)
T ss_pred HHhh-hhh-----------HHHHHHHHHHhhhc-------CCcHHHHHHHHHHhh----hHHH-----HHHHHHHHHHHH
Confidence 3332 110 11111111111111 112222222222111 1221 235689999999
Q ss_pred hcCC-hHHHHHHHHHHhhhhhcCCCCCCCCCCCCcccccCCCCCCcccccCcccCcccchhHhhccchHHHHHhhcCCCh
Q 001833 823 EYGT-TLTKEHAATSLARFSKNSLGLSRPIPKRKGFWCFSPPPEIGCQVHGGLCGIESSFCLLEANAVRPLVRVLEDPDH 901 (1008)
Q Consensus 823 ~~~~-~~v~~~Aa~aL~nLs~~~~~l~~~~~~~~g~~~~~~~~~~~c~vh~~~c~~~~~~~l~~~g~i~~Lv~lL~~~d~ 901 (1008)
+.+- -.+|..++..+.-|+..-..-.+| ..| ..+..++..+++.++
T Consensus 1245 R~sVgl~Tkvg~A~fI~~L~~r~~~emtP---~sg------------------------------Kll~al~~g~~dRNe 1291 (1702)
T KOG0915|consen 1245 RGSVGLGTKVGCASFISLLVQRLGSEMTP---YSG------------------------------KLLRALFPGAKDRNE 1291 (1702)
T ss_pred hccCCCCcchhHHHHHHHHHHHhccccCc---chh------------------------------HHHHHHhhccccccH
Confidence 9874 378888888888888532211111 111 356777777888899
Q ss_pred hhhHHHHHHHHhhh
Q 001833 902 GACEASLDALVTLI 915 (1008)
Q Consensus 902 ~v~~~al~aL~~L~ 915 (1008)
.++.+-..|...|+
T Consensus 1292 sv~kafAsAmG~L~ 1305 (1702)
T KOG0915|consen 1292 SVRKAFASAMGYLA 1305 (1702)
T ss_pred HHHHHHHHHHHHHH
Confidence 99998888888888
No 172
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=96.11 E-value=0.0045 Score=51.84 Aligned_cols=39 Identities=36% Similarity=0.778 Sum_probs=31.1
Q ss_pred ccccccccCCc-------------eeccCcccccHHHHHHHHhcCCCCCCCcC
Q 001833 268 CPITRDVMVDP-------------VETSSGQTFERSAIEKWFSDGNNLCPLTM 307 (1008)
Q Consensus 268 cpi~~~~m~dp-------------v~~~~g~t~~r~~i~~w~~~~~~~cp~~~ 307 (1008)
|+||++.|.|| +...|||.|-..||++|+..+. +||.++
T Consensus 22 C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~~~-~CP~CR 73 (73)
T PF12678_consen 22 CAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQNN-TCPLCR 73 (73)
T ss_dssp ETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTTSS-B-TTSS
T ss_pred ccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhcCC-cCCCCC
Confidence 99999999543 3347999999999999997644 899985
No 173
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.11 E-value=0.0037 Score=69.74 Aligned_cols=55 Identities=25% Similarity=0.453 Sum_probs=48.7
Q ss_pred cccccccccccCCceeccCcccccHHHHHHHHhc----CCCCCCCcCccCCCCCCccCH
Q 001833 265 SFYCPITRDVMVDPVETSSGQTFERSAIEKWFSD----GNNLCPLTMTVLDTSILRPNK 319 (1008)
Q Consensus 265 ~~~cpi~~~~m~dpv~~~~g~t~~r~~i~~w~~~----~~~~cp~~~~~l~~~~l~pN~ 319 (1008)
+..||||++--.=|+.+.|||-||=.||-++|.. +...||.|+.....++|.|=+
T Consensus 186 ~~~CPICL~~~~~p~~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~kdl~pv~ 244 (513)
T KOG2164|consen 186 DMQCPICLEPPSVPVRTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITLKDLLPVF 244 (513)
T ss_pred CCcCCcccCCCCcccccccCceeeHHHHHHHHhhhcccCCccCCchhhhccccceeeee
Confidence 8899999999999999999999999999998863 567899999988887777644
No 174
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=96.11 E-value=5.6 Score=49.27 Aligned_cols=153 Identities=14% Similarity=0.115 Sum_probs=102.9
Q ss_pred CChHHHHHhhccCChhHHHHHHHHHHHhccCCChhHHHhhhcccchHHHHHHhcCCCCHHHHHHHHHHHhcCCC----Ch
Q 001833 679 SAIPVLVQLCEHDNENVRANAVKLFCCLVDDGDEAIIREHVGQKCLETLVTIIQSSHNEEEIASAMGILSKLPE----VP 754 (1008)
Q Consensus 679 ~~i~~Lv~ll~~~~~~v~~~a~~~L~~Ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~v~~~a~~~L~nL~~----~~ 754 (1008)
+++..|+..+++.+..++-.|++.+..++..-+.+... .++...++++.-..++.....++-+|+.|+. -+
T Consensus 341 ~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~~Lad-----~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLlp 415 (1133)
T KOG1943|consen 341 FVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLPPELAD-----QVIGSVIDLFNPAEDDSAWHGACLALAELALRGLLLP 415 (1133)
T ss_pred HHHHHHHHhccCCcchhhHHHHHHHHHHHccCcHHHHH-----HHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcch
Confidence 46778888889999999999999999998444433222 3455666655554556677888989998876 22
Q ss_pred hhHHHHHhcCCHHHHHHHhhCCCCCCC--chhhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHHHhhcCChHHHHH
Q 001833 755 QFTQWLLDAGALPIVLNFLKNGRQNDP--NRFQVVENAVGALRRFTAPTNLEWQKRAAEAGVIPKLVQLLEYGTTLTKEH 832 (1008)
Q Consensus 755 ~~~~~l~~~g~l~~Lv~lL~~~~~~~~--~~~~v~~~a~~aL~~L~~~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~v~~~ 832 (1008)
... ..++|.+++.|.-....+. ....+|..||.+++.++..+++....-+.+.=+-..|...+-+.+...|++
T Consensus 416 s~l-----~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDrevncRRA 490 (1133)
T KOG1943|consen 416 SLL-----EDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDREVNCRRA 490 (1133)
T ss_pred HHH-----HHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCchhhHhHH
Confidence 111 1346777776665333211 346799999999999999876664444333222333444555667799999
Q ss_pred HHHHHhhhh
Q 001833 833 AATSLARFS 841 (1008)
Q Consensus 833 Aa~aL~nLs 841 (1008)
|..|+....
T Consensus 491 AsAAlqE~V 499 (1133)
T KOG1943|consen 491 ASAALQENV 499 (1133)
T ss_pred HHHHHHHHh
Confidence 999887665
No 175
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=96.04 E-value=0.0066 Score=62.11 Aligned_cols=65 Identities=22% Similarity=0.360 Sum_probs=55.1
Q ss_pred ccccccccccCCceec-cCcccccHHHHHHHHhcCCCCCCCcCc-cCCCCCCccCHhhHHHHHHHHH
Q 001833 266 FYCPITRDVMVDPVET-SSGQTFERSAIEKWFSDGNNLCPLTMT-VLDTSILRPNKTLRQSIEEWKD 330 (1008)
Q Consensus 266 ~~cpi~~~~m~dpv~~-~~g~t~~r~~i~~w~~~~~~~cp~~~~-~l~~~~l~pN~~l~~~I~~w~~ 330 (1008)
+.||+|+-+.+.|+-+ +|||+||..||+.-+-+....||.|.. ..--..|+|.+--+.-|+.+..
T Consensus 275 LkCplc~~Llrnp~kT~cC~~~fc~eci~~al~dsDf~CpnC~rkdvlld~l~pD~dk~~EvE~~lk 341 (427)
T COG5222 275 LKCPLCHCLLRNPMKTPCCGHTFCDECIGTALLDSDFKCPNCSRKDVLLDGLTPDIDKKLEVEKALK 341 (427)
T ss_pred ccCcchhhhhhCcccCccccchHHHHHHhhhhhhccccCCCcccccchhhccCccHHHHHHHHHHHH
Confidence 8999999999999999 899999999999988777888999954 3344678899877777777754
No 176
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=96.01 E-value=0.011 Score=46.49 Aligned_cols=55 Identities=22% Similarity=0.161 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHHcCChhhHHHHhhcCcHHHHHHHhccCCHHHHHHHHHHHHHh
Q 001833 516 ESVKMRMATTLAEMELTDHHKASLLEGNVLGPLLHLVSRGDIQMKKVAVKALRNL 570 (1008)
Q Consensus 516 ~~~~~~aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~~L 570 (1008)
+.+|..|+.+|++++........-....+++.|+.+|.+.++.++..|+++|.+|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 4678999999999876665554445678999999999999999999999999875
No 177
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=95.97 E-value=2.5 Score=48.93 Aligned_cols=340 Identities=21% Similarity=0.210 Sum_probs=183.2
Q ss_pred HHHHHHHhcCCH---HHHHHHHHHHHHHcCChhhHHHHhhcCcHHHHHHHhccC-CHHHHHHHHHHHHHhhC-CCc----
Q 001833 505 KHLLQRLSAGPE---SVKMRMATTLAEMELTDHHKASLLEGNVLGPLLHLVSRG-DIQMKKVAVKALRNLSS-VPQ---- 575 (1008)
Q Consensus 505 ~~Lv~~L~~~~~---~~~~~aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~-~~~~~~~A~~aL~~L~~-~~~---- 575 (1008)
|.++..|.+... ...+..+.+|..++.+.+.-..+.. ..+..+-.....+ +.......+.+|.++.. ...
T Consensus 2 p~ll~~Lpd~~~~~~~~~~~~L~~l~~ls~~~~i~~~~~~-~ll~kl~~~~~~~~~~~~~~~il~tl~~~~~~~~~~~~~ 80 (415)
T PF12460_consen 2 PALLALLPDSDSSTDSNYERILEALAALSTSPQILETLSI-RLLNKLSIVCQSESSSDYCHAILSTLQSLLEKKQEDKQF 80 (415)
T ss_pred chHHhhCCCCCCcchhHHHHHHHHHHHHHCChhHHHHHHH-HHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhccccccc
Confidence 556666665543 5667888999999887765443332 3333333333322 45566667777777753 211
Q ss_pred -hhHHHHhcCChHHHHHHhcccCCCC----cchHHHHHHHHHHHhccccccccCCcccccccchhHHHHHHHhhc-----
Q 001833 576 -NGLQMIKEGAVGPLVDLLLHHSSSS----SSLREETATAIMHLAVSTMYQESSQTPVTLLESDKEIFMLFSLIN----- 645 (1008)
Q Consensus 576 -~~~~i~~~G~v~~Ll~ll~~~~~~~----~~~~~~a~~~L~nLa~~~~~~~~~~~~~~~l~~~~~i~~L~~ll~----- 645 (1008)
.-....+..++|.+.+......... ..+.+.+..++..+...-.... ....+..+..+.-
T Consensus 81 ~~~~~y~~~~lv~~l~~~~~~~~~~~~~~~~~~L~~~~~l~~~iv~~l~~~~----------q~~~~~~~~~lf~~~~~~ 150 (415)
T PF12460_consen 81 EDNSWYFHRILVPRLFELALQASDQSSDLDDRVLELLSRLINLIVRSLSPEK----------QQEILDELYSLFLSPKSF 150 (415)
T ss_pred chHHHHHHhHHHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHhCCHHH----------HHHHHHHHHHHHcccccc
Confidence 1233344458888888876543221 1233333333333333211111 1122333333322
Q ss_pred -----cCC--hHHHHH----HHHHHHHhccCCChhhHHHHhhhcCChHHHHHhhccC-ChhHHHHHHHHHHHhccCC--C
Q 001833 646 -----LTG--PNVQQR----ILQTFNALCRSPSAGNIKTTLTQCSAIPVLVQLCEHD-NENVRANAVKLFCCLVDDG--D 711 (1008)
Q Consensus 646 -----~~~--~~v~~~----al~aL~~L~~~~~~~~~~~~i~e~~~i~~Lv~ll~~~-~~~v~~~a~~~L~~Ls~~~--~ 711 (1008)
... +..+.. ...++.++-+.-..+.. ...+..++.+..+. ++..+..++.+++.|. +. .
T Consensus 151 ~~~~~~~~~~~~~~~~~~~l~~~il~~l~~~~~~~~~------~~ll~~l~~~~~~~~~~~~~~~~~~~la~Lv-NK~~~ 223 (415)
T PF12460_consen 151 SPFQPSSSTISEQQSRLVILFSAILCSLRKDVSLPDL------EELLQSLLNLALSSEDEFSRLAALQLLASLV-NKWPD 223 (415)
T ss_pred CCCCccccccccccccHHHHHHHHHHcCCcccCccCH------HHHHHHHHHHHHcCCChHHHHHHHHHHHHHH-cCCCC
Confidence 111 111222 22333333222111111 12466677766554 5888999999999887 33 2
Q ss_pred hhHHHhhhcccchHHHHHHhcCCCCHHHHHHHHHHHhcCCC------ChhhHHHHHhcCCHHHHHHHhhCCCCCCCchhh
Q 001833 712 EAIIREHVGQKCLETLVTIIQSSHNEEEIASAMGILSKLPE------VPQFTQWLLDAGALPIVLNFLKNGRQNDPNRFQ 785 (1008)
Q Consensus 712 ~~~~~~~~~~~~i~~Lv~lL~~~~~~~v~~~a~~~L~nL~~------~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~ 785 (1008)
++... ..+..+...+........+..+..++..+.. ++... ..+..++.++.+ +.
T Consensus 224 ~~~l~-----~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~~~~~------~~~~~L~~lL~~--------~~ 284 (415)
T PF12460_consen 224 DDDLD-----EFLDSLLQSISSSEDSELRPQALEILIWITKALVMRGHPLAT------ELLDKLLELLSS--------PE 284 (415)
T ss_pred hhhHH-----HHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCCchHH------HHHHHHHHHhCC--------hh
Confidence 22111 2233333333222222334444444433332 22221 235667777766 45
Q ss_pred HHHHHHHHHHHhcCCCCHHH-------------HHHHHHcCChHHHHHHhhcCChHHHHHHHHHHhhhhhcCCCCCCCCC
Q 001833 786 VVENAVGALRRFTAPTNLEW-------------QKRAAEAGVIPKLVQLLEYGTTLTKEHAATSLARFSKNSLGLSRPIP 852 (1008)
Q Consensus 786 v~~~a~~aL~~L~~~~~~~~-------------~~~l~~~g~l~~Lv~lL~~~~~~v~~~Aa~aL~nLs~~~~~l~~~~~ 852 (1008)
+...++.++.-+..+ .++. ++.+. ...+|.|++..+..+...+..-..||.++..+.+.
T Consensus 285 ~g~~aA~~f~il~~d-~~~~l~~~~~a~vklLykQR~F-~~~~p~L~~~~~~~~~~~k~~yL~ALs~ll~~vP~------ 356 (415)
T PF12460_consen 285 LGQQAAKAFGILLSD-SDDVLNKENHANVKLLYKQRFF-TQVLPKLLEGFKEADDEIKSNYLTALSHLLKNVPK------ 356 (415)
T ss_pred hHHHHHHHHhhHhcC-cHHhcCccccchhhhHHhHHHH-HHHHHHHHHHHhhcChhhHHHHHHHHHHHHhhCCH------
Confidence 677888888888774 1332 33332 34688888888888878899999999999854431
Q ss_pred CCCcccccCCCCCCcccccCcccCcccchhHhhccchHHHHHhhcCCChhhhHHHHHHHHhhh
Q 001833 853 KRKGFWCFSPPPEIGCQVHGGLCGIESSFCLLEANAVRPLVRVLEDPDHGACEASLDALVTLI 915 (1008)
Q Consensus 853 ~~~g~~~~~~~~~~~c~vh~~~c~~~~~~~l~~~g~i~~Lv~lL~~~d~~v~~~al~aL~~L~ 915 (1008)
.+..---...++.|++.|.-+|+.++.+++.+|..++
T Consensus 357 --------------------------~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l 393 (415)
T PF12460_consen 357 --------------------------SVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMIL 393 (415)
T ss_pred --------------------------HHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 1111111346778889999999999999999999998
No 178
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=95.80 E-value=0.031 Score=49.64 Aligned_cols=69 Identities=17% Similarity=0.181 Sum_probs=59.7
Q ss_pred HHHHHHHHhcCCC-ChhhHHHHHhcCCHHHHHHHhhCCCCCCCchhhHHHHHHHHHHHhcCCCCHHHHHHHHHcC
Q 001833 740 IASAMGILSKLPE-VPQFTQWLLDAGALPIVLNFLKNGRQNDPNRFQVVENAVGALRRFTAPTNLEWQKRAAEAG 813 (1008)
Q Consensus 740 ~~~a~~~L~nL~~-~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~v~~~a~~aL~~L~~~~~~~~~~~l~~~g 813 (1008)
+...+++|+||+. ++.....+.+.|+++.++....-+. .++.++|.|++++.||+.+ +++.+..+.+..
T Consensus 3 K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~----~nP~irEwai~aiRnL~e~-n~eNQ~~I~~L~ 72 (102)
T PF09759_consen 3 KRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDD----HNPFIREWAIFAIRNLCEG-NPENQEFIAQLE 72 (102)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCc----ccHHHHHHHHHHHHHHHhC-CHHHHHHHHhcc
Confidence 4567889999999 9999999999999999999876633 6899999999999999998 899888876643
No 179
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=95.79 E-value=1.1 Score=47.02 Aligned_cols=143 Identities=18% Similarity=0.129 Sum_probs=98.2
Q ss_pred hhHHHHHHHHHHHh-ccCchhhHHhhcccchHHHHHHHhc-------CC--Ch---HHHHHHHHHHHhhcCCcccHHHHH
Q 001833 433 IEERKLAVALLLEL-STCNTLRDQIGDVQGCILLLVTMAS-------SD--DN---QASRDAQELLENLSFSDDNVVQMA 499 (1008)
Q Consensus 433 ~~~~~~A~~~L~~L-s~~~~~~~~i~~~~g~i~~Lv~lL~-------~~--~~---~~~~~a~~aL~~Ls~~~~n~~~i~ 499 (1008)
.+.|+.|...|..- ...++..-.+=...|.+..|++=.- .+ ++ .-.-+|+..|.-++.+++.+..+.
T Consensus 9 ~~~Re~Al~eLsk~r~~~~~La~~LW~s~G~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAshpetr~~Fl 88 (262)
T PF04078_consen 9 PETRENALLELSKKRESFPDLAPLLWHSFGTIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVASHPETRMPFL 88 (262)
T ss_dssp HHHHHHHHHHHHHTCCC-TTHHHHHHTSTTHHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH-TTTHHHHH
T ss_pred cchHHHHHHHHHHhhhcccchhHHHHcCCChHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHcChHHHHHHH
Confidence 45566666555543 2345555555555777776655332 11 12 234456667777789999999999
Q ss_pred hcCcHHHHHHHHhcCC-----HHHHHHHHHHHHHHcCCh--hhHHHHhhcCcHHHHHHHhccCCHHHHHHHHHHHHHhhC
Q 001833 500 KANYFKHLLQRLSAGP-----ESVKMRMATTLAEMELTD--HHKASLLEGNVLGPLLHLVSRGDIQMKKVAVKALRNLSS 572 (1008)
Q Consensus 500 ~~g~v~~Lv~~L~~~~-----~~~~~~aa~~L~~Ls~~~--~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~ 572 (1008)
++...--|...|+..+ +-+|-.++++++.|...+ +.-..+.+.+++|..++.|..|+.-.|..|...+.++-.
T Consensus 89 ~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~GselSKtvAtfIlqKIL~ 168 (262)
T PF04078_consen 89 KAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFGSELSKTVATFILQKILL 168 (262)
T ss_dssp HTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS-HHHHHHHHHHHHHHHH
T ss_pred HcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhccHHHHHHHHHHHHHHHc
Confidence 9998877888887653 457888999999997655 455567788999999999999999999999999988865
Q ss_pred CCc
Q 001833 573 VPQ 575 (1008)
Q Consensus 573 ~~~ 575 (1008)
++.
T Consensus 169 dd~ 171 (262)
T PF04078_consen 169 DDV 171 (262)
T ss_dssp SHH
T ss_pred chh
Confidence 443
No 180
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=95.68 E-value=0.79 Score=50.45 Aligned_cols=192 Identities=17% Similarity=0.186 Sum_probs=116.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHcCChhhHHHHh--hcCcHHHHHHHhccCCHHHHHHHHHHHHHhhCC---CchhHHHH
Q 001833 507 LLQRLSAGPESVKMRMATTLAEMELTDHHKASLL--EGNVLGPLLHLVSRGDIQMKKVAVKALRNLSSV---PQNGLQMI 581 (1008)
Q Consensus 507 Lv~~L~~~~~~~~~~aa~~L~~Ls~~~~~k~~i~--~~g~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~---~~~~~~i~ 581 (1008)
.+..+.+.+...|+.++..+.++-...-.-..+. ....+..+.+.++.+...-+..|+.++.-++-. ......++
T Consensus 48 ~Id~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ei~ 127 (309)
T PF05004_consen 48 AIDLLTEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSEEIF 127 (309)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHHHHH
Confidence 3455566667788888888777632221111111 123567788888888877777888888877742 24445555
Q ss_pred hcCChHHHHHHhcccCCCCcchHHHHHHHHHHHhccccccccCCcccccccchhHHHHHHHh--hc----------cCCh
Q 001833 582 KEGAVGPLVDLLLHHSSSSSSLREETATAIMHLAVSTMYQESSQTPVTLLESDKEIFMLFSL--IN----------LTGP 649 (1008)
Q Consensus 582 ~~G~v~~Ll~ll~~~~~~~~~~~~~a~~~L~nLa~~~~~~~~~~~~~~~l~~~~~i~~L~~l--l~----------~~~~ 649 (1008)
+ ...|.|..++.+++.. +..+..++.+|+-++.-...... .+......+..++.. .+ ..++
T Consensus 128 ~-~~~~~L~~~l~d~s~~-~~~R~~~~~aLai~~fv~~~d~~-----~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~ 200 (309)
T PF05004_consen 128 E-ELKPVLKRILTDSSAS-PKARAACLEALAICTFVGGSDEE-----ETEELMESLESIFLLSILKSDGNAPVVAAEDDA 200 (309)
T ss_pred H-HHHHHHHHHHhCCccc-hHHHHHHHHHHHHHHHhhcCChh-----HHHHHHHHHHHHHHHHhcCcCCCcccccCCCcc
Confidence 4 4788999999877543 55666666677666552111110 011001122222211 11 1135
Q ss_pred HHHHHHHHHHHHhccCCChhhHHHHhhhcCChHHHHHhhccCChhHHHHHHHHHHHhc
Q 001833 650 NVQQRILQTFNALCRSPSAGNIKTTLTQCSAIPVLVQLCEHDNENVRANAVKLFCCLV 707 (1008)
Q Consensus 650 ~v~~~al~aL~~L~~~~~~~~~~~~i~e~~~i~~Lv~ll~~~~~~v~~~a~~~L~~Ls 707 (1008)
.+...|+.+..-|...-+...+...+. ..++.|..+|.+++.++|.+|..+|+.|-
T Consensus 201 ~l~~aAL~aW~lLlt~~~~~~~~~~~~--~~~~~l~~lL~s~d~~VRiAAGEaiAll~ 256 (309)
T PF05004_consen 201 ALVAAALSAWALLLTTLPDSKLEDLLE--EALPALSELLDSDDVDVRIAAGEAIALLY 256 (309)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHH--HHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 688888888777776533333443333 35899999999999999999999888774
No 181
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=95.58 E-value=0.21 Score=50.89 Aligned_cols=107 Identities=16% Similarity=0.242 Sum_probs=91.1
Q ss_pred HHHHHHHHHhcCCCChhhHHHHHhcCCHHHHHHHhhCCCCCCCchhhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHH
Q 001833 739 EIASAMGILSKLPEVPQFTQWLLDAGALPIVLNFLKNGRQNDPNRFQVVENAVGALRRFTAPTNLEWQKRAAEAGVIPKL 818 (1008)
Q Consensus 739 v~~~a~~~L~nL~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~v~~~a~~aL~~L~~~~~~~~~~~l~~~g~l~~L 818 (1008)
-...|+..|-.++++++.+....++..--.+..+|..+.. +++.+.+|-.++++++.|....+++....+...+++|..
T Consensus 95 RVcnaL~LlQcvASHpdTr~~FL~A~iPlylYpfL~Tt~~-~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlC 173 (293)
T KOG3036|consen 95 RVCNALALLQCVASHPDTRRAFLRAHIPLYLYPFLNTTSK-SRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLC 173 (293)
T ss_pred hHHHHHHHHHHHhcCcchHHHHHHccChhhhHHhhhcccc-CCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHH
Confidence 4466777788888899999999999877777788877443 347789999999999999998788889999999999999
Q ss_pred HHHhhcCChHHHHHHHHHHhhhhhcCCC
Q 001833 819 VQLLEYGTTLTKEHAATSLARFSKNSLG 846 (1008)
Q Consensus 819 v~lL~~~~~~v~~~Aa~aL~nLs~~~~~ 846 (1008)
++.+..|+...+.-|...+..+-.+..+
T Consensus 174 Lrime~GSelSKtvA~fIlqKIlldD~G 201 (293)
T KOG3036|consen 174 LRIMESGSELSKTVATFILQKILLDDVG 201 (293)
T ss_pred HHHHhcccHHHHHHHHHHHHHHhhcccc
Confidence 9999999999999999999998865543
No 182
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=95.53 E-value=8.4 Score=46.91 Aligned_cols=102 Identities=17% Similarity=0.115 Sum_probs=73.0
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHhhcCCcccHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHHcCChhhHHHHhhc
Q 001833 463 ILLLVTMASSDDNQASRDAQELLENLSFSDDNVVQMAKANYFKHLLQRLSAGPESVKMRMATTLAEMELTDHHKASLLEG 542 (1008)
Q Consensus 463 i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~~~n~~~i~~~g~v~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~~~~k~~i~~~ 542 (1008)
+..+.+=++++++.++-.|+.+|..+= ..-+-..+++++.+.+.++++.+|..|+-+++.+-.-+. ....+.
T Consensus 94 vNti~kDl~d~N~~iR~~AlR~ls~l~------~~el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~--~l~~~~ 165 (757)
T COG5096 94 VNTIQKDLQDPNEEIRGFALRTLSLLR------VKELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDK--DLYHEL 165 (757)
T ss_pred HHHHHhhccCCCHHHHHHHHHHHHhcC------hHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCH--hhhhcc
Confidence 344445556778888888777776551 111223456778888888889999999888888743332 224457
Q ss_pred CcHHHHHHHhccCCHHHHHHHHHHHHHhhC
Q 001833 543 NVLGPLLHLVSRGDIQMKKVAVKALRNLSS 572 (1008)
Q Consensus 543 g~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~ 572 (1008)
|.+..+..++.+.+|.+..+|+.+|..+..
T Consensus 166 g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~ 195 (757)
T COG5096 166 GLIDILKELVADSDPIVIANALASLAEIDP 195 (757)
T ss_pred cHHHHHHHHhhCCCchHHHHHHHHHHHhch
Confidence 788888999999999999999999988864
No 183
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=95.43 E-value=5.2 Score=48.63 Aligned_cols=138 Identities=14% Similarity=0.179 Sum_probs=99.1
Q ss_pred HHHHHhcCCChHHHHHHHHHHHhhcCCcccHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHHcCChhhHHHHhhcCc
Q 001833 465 LLVTMASSDDNQASRDAQELLENLSFSDDNVVQMAKANYFKHLLQRLSAGPESVKMRMATTLAEMELTDHHKASLLEGNV 544 (1008)
Q Consensus 465 ~Lv~lL~~~~~~~~~~a~~aL~~Ls~~~~n~~~i~~~g~v~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~~~~k~~i~~~g~ 544 (1008)
-+++...+.|.+.++..---|.+.+...++...+ +++.+.+=+.++++.+|..|.++++.+-...= -..+
T Consensus 59 dViK~~~trd~ElKrL~ylYl~~yak~~P~~~lL----avNti~kDl~d~N~~iR~~AlR~ls~l~~~el------~~~~ 128 (757)
T COG5096 59 DVIKNVATRDVELKRLLYLYLERYAKLKPELALL----AVNTIQKDLQDPNEEIRGFALRTLSLLRVKEL------LGNI 128 (757)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHhccCHHHHHH----HHHHHHhhccCCCHHHHHHHHHHHHhcChHHH------HHHH
Confidence 3444444566666666655666665544432222 35566677889999999999999988633221 1236
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHhhCCCchhHHHHhcCChHHHHHHhcccCCCCcchHHHHHHHHHHHhcc
Q 001833 545 LGPLLHLVSRGDIQMKKVAVKALRNLSSVPQNGLQMIKEGAVGPLVDLLLHHSSSSSSLREETATAIMHLAVS 617 (1008)
Q Consensus 545 i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~~~~~~~i~~~G~v~~Ll~ll~~~~~~~~~~~~~a~~~L~nLa~~ 617 (1008)
++++.+++.++++.+|+.|+-|+.++-+- .+....+.|.+..+..++.+.+ |.+..+|+.+|..+...
T Consensus 129 ~~~ik~~l~d~~ayVRk~Aalav~kly~l--d~~l~~~~g~~~~l~~l~~D~d---P~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 129 IDPIKKLLTDPHAYVRKTAALAVAKLYRL--DKDLYHELGLIDILKELVADSD---PIVIANALASLAEIDPE 196 (757)
T ss_pred HHHHHHHccCCcHHHHHHHHHHHHHHHhc--CHhhhhcccHHHHHHHHhhCCC---chHHHHHHHHHHHhchh
Confidence 78899999999999999999999999742 3345567788888888887655 78999999999998643
No 184
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=95.39 E-value=0.049 Score=48.41 Aligned_cols=70 Identities=13% Similarity=0.273 Sum_probs=52.6
Q ss_pred ccchHHHHHhhcCCChhhhHHHHHHHHhhh-cccccchhhHHHHhcCchHHHHHHhcCCChHHHHHHHHHHHHHhc
Q 001833 886 ANAVRPLVRVLEDPDHGACEASLDALVTLI-EGERLQNGSKVLEDANAIDRMVRFLSSPSPKLQEKALDSVERIFR 960 (1008)
Q Consensus 886 ~g~i~~Lv~lL~~~d~~v~~~al~aL~~L~-~~~~~~~~~~~i~~~~~i~~l~~ll~~~~~~l~~~a~~~L~~l~~ 960 (1008)
..+++|++.++.++|+.||..|+++|.|++ ... ..... .-...++.|.+++.+.++.|+..| ++|.+++.
T Consensus 26 ~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~--~~~l~--~f~~IF~~L~kl~~D~d~~Vr~~a-~~Ld~llk 96 (97)
T PF12755_consen 26 DEILPPVLKCFDDQDSRVRYYACEALYNISKVAR--GEILP--YFNEIFDALCKLSADPDENVRSAA-ELLDRLLK 96 (97)
T ss_pred HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHH--HHHHH--HHHHHHHHHHHHHcCCchhHHHHH-HHHHHHhc
Confidence 358999999999999999999999999999 221 01111 123457788899999999988776 66666654
No 185
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=95.31 E-value=3 Score=50.45 Aligned_cols=327 Identities=14% Similarity=0.165 Sum_probs=182.7
Q ss_pred cCCChHHHHHHHHHHHhhcCCcccHHHHHhcCcHHHHHHHH-hcCCHHHHHHHHHHHHHHcCChhhHHHHhhcCcHHHHH
Q 001833 471 SSDDNQASRDAQELLENLSFSDDNVVQMAKANYFKHLLQRL-SAGPESVKMRMATTLAEMELTDHHKASLLEGNVLGPLL 549 (1008)
Q Consensus 471 ~~~~~~~~~~a~~aL~~Ls~~~~n~~~i~~~g~v~~Lv~~L-~~~~~~~~~~aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv 549 (1008)
.+..|.....+..++...+.....-..+.. -.+...+..+ .+..+.++..+.++++..+...... -...+++..|+
T Consensus 460 ~~e~P~Ll~Ra~~~i~~fs~~~~~~~~~~~-~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~~~~vl~--~~~p~ild~L~ 536 (1005)
T KOG2274|consen 460 YQESPFLLLRAFLTISKFSSSTVINPQLLQ-HFLNATVNALTMDVPPPVKISAVRAFCGYCKVKVLL--SLQPMILDGLL 536 (1005)
T ss_pred cccCHHHHHHHHHHHHHHHhhhccchhHHH-HHHHHHHHhhccCCCCchhHHHHHHHHhccCceecc--ccchHHHHHHH
Confidence 356676666666666544332111111100 1112222222 2334567777777776655211111 12356778888
Q ss_pred HHhccCCHHHHHHHHHHHHHhhCCCchhHHHHhcCChHHHHHHhcccCCCCcchHHHHHHHHHHHhccccccccCCcccc
Q 001833 550 HLVSRGDIQMKKVAVKALRNLSSVPQNGLQMIKEGAVGPLVDLLLHHSSSSSSLREETATAIMHLAVSTMYQESSQTPVT 629 (1008)
Q Consensus 550 ~lL~~~~~~~~~~A~~aL~~L~~~~~~~~~i~~~G~v~~Ll~ll~~~~~~~~~~~~~a~~~L~nLa~~~~~~~~~~~~~~ 629 (1008)
++....+..+-..-..+|...|..+.......++-+.|.++.+....+++ |.+...+..++..++....+...
T Consensus 537 qlas~~s~evl~llmE~Ls~vv~~dpef~as~~skI~P~~i~lF~k~s~D-P~V~~~~qd~f~el~q~~~~~g~------ 609 (1005)
T KOG2274|consen 537 QLASKSSDEVLVLLMEALSSVVKLDPEFAASMESKICPLTINLFLKYSED-PQVASLAQDLFEELLQIAANYGP------ 609 (1005)
T ss_pred HHcccccHHHHHHHHHHHHHHhccChhhhhhhhcchhHHHHHHHHHhcCC-chHHHHHHHHHHHHHHHHHhhcc------
Confidence 88887788888888999999998665556666777888888888776655 67888888887777763322221
Q ss_pred cccchhHHHHHHHhhccCC----hHHHHHHHHHHHHhccCCChhhHHHHhhhcCChHHHHHh-hccCChhHHHHHHHHHH
Q 001833 630 LLESDKEIFMLFSLINLTG----PNVQQRILQTFNALCRSPSAGNIKTTLTQCSAIPVLVQL-CEHDNENVRANAVKLFC 704 (1008)
Q Consensus 630 ~l~~~~~i~~L~~ll~~~~----~~v~~~al~aL~~L~~~~~~~~~~~~i~e~~~i~~Lv~l-l~~~~~~v~~~a~~~L~ 704 (1008)
..+..++.+++.+.... +....-++..|..+.+...++ .-+.+.. .+.|.+.+. +++++.+...++..+|.
T Consensus 610 --m~e~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~p-L~~~l~~-~~FpaVak~tlHsdD~~tlQ~~~EcLr 685 (1005)
T KOG2274|consen 610 --MQERLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSP-LPNLLIC-YAFPAVAKITLHSDDHETLQNATECLR 685 (1005)
T ss_pred --hHHHHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCC-ccHHHHH-HHhHHhHhheeecCChHHHHhHHHHHH
Confidence 12567899999998665 667777888888888765444 2233333 356666664 45668889999999998
Q ss_pred HhccCCChhHHHhhhccc-----chHHHHHHhcCCCCHHHHHHHHHHHhcCCC--ChhhHHHHHhcC---CHHHHHHHhh
Q 001833 705 CLVDDGDEAIIREHVGQK-----CLETLVTIIQSSHNEEEIASAMGILSKLPE--VPQFTQWLLDAG---ALPIVLNFLK 774 (1008)
Q Consensus 705 ~Ls~~~~~~~~~~~~~~~-----~i~~Lv~lL~~~~~~~v~~~a~~~L~nL~~--~~~~~~~l~~~g---~l~~Lv~lL~ 774 (1008)
.+.....+.......+.| .+..+-++|.-..+ ..++..+|.|.. -...-+ .+... .+..++.-|.
T Consensus 686 a~Is~~~eq~~t~~~e~g~~~~yImqV~sqLLdp~~s----ds~a~~VG~lV~tLit~a~~-el~~n~d~IL~Avisrmq 760 (1005)
T KOG2274|consen 686 ALISVTLEQLLTWHDEPGHNLWYIMQVLSQLLDPETS----DSAAAFVGPLVLTLITHASS-ELGPNLDQILRAVISRLQ 760 (1005)
T ss_pred HHHhcCHHHHHhhccCCCccHHHHHHHHHHHcCCccc----hhHHHHHhHHHHHHHHHHHH-HhchhHHHHHHHHHHHHH
Confidence 887444444444444433 23344445544322 122223333322 000000 00000 1233333333
Q ss_pred CCCCCCCchhhHHHHHHHHHHHhcCCCCHH-HHHHHHH---cCChHHHHHHh
Q 001833 775 NGRQNDPNRFQVVENAVGALRRFTAPTNLE-WQKRAAE---AGVIPKLVQLL 822 (1008)
Q Consensus 775 ~~~~~~~~~~~v~~~a~~aL~~L~~~~~~~-~~~~l~~---~g~l~~Lv~lL 822 (1008)
.- +...+....+.++++|+.. +.+ ....+.. .++-|.+--.+
T Consensus 761 ~a-----e~lsviQsLi~VfahL~~t-~~~~~l~FL~Slp~~~g~~AlefVM 806 (1005)
T KOG2274|consen 761 QA-----ETLSVIQSLIMVFAHLVHT-DLDQLLNFLSSLPGPTGEPALEFVM 806 (1005)
T ss_pred Hh-----hhHHHHHHHHHHHHHHhhC-CHHHHHHHHHhCCCCCCCcHHHHHH
Confidence 21 4556777888888888876 333 3333332 35555554433
No 186
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=95.15 E-value=2.5 Score=43.48 Aligned_cols=99 Identities=17% Similarity=0.117 Sum_probs=79.9
Q ss_pred HHHHHHHHHHhhcCCcccHHHHHhcCcHHHHHHHHhcC-----CHHHHHHHHHHHHHHcCCh--hhHHHHhhcCcHHHHH
Q 001833 477 ASRDAQELLENLSFSDDNVVQMAKANYFKHLLQRLSAG-----PESVKMRMATTLAEMELTD--HHKASLLEGNVLGPLL 549 (1008)
Q Consensus 477 ~~~~a~~aL~~Ls~~~~n~~~i~~~g~v~~Lv~~L~~~-----~~~~~~~aa~~L~~Ls~~~--~~k~~i~~~g~i~~Lv 549 (1008)
-.-+|+..|.-++++++.+..+.++-+---|-.+|..+ .+-.|-.++++++.|..++ +.-..+...++||..+
T Consensus 95 RVcnaL~LlQcvASHpdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCL 174 (293)
T KOG3036|consen 95 RVCNALALLQCVASHPDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCL 174 (293)
T ss_pred hHHHHHHHHHHHhcCcchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHH
Confidence 35567777888899999999999998877777777654 2457889999999996655 4445677899999999
Q ss_pred HHhccCCHHHHHHHHHHHHHhhCCCc
Q 001833 550 HLVSRGDIQMKKVAVKALRNLSSVPQ 575 (1008)
Q Consensus 550 ~lL~~~~~~~~~~A~~aL~~L~~~~~ 575 (1008)
+.+..|+...|..|+.++..+-.++.
T Consensus 175 rime~GSelSKtvA~fIlqKIlldD~ 200 (293)
T KOG3036|consen 175 RIMESGSELSKTVATFILQKILLDDV 200 (293)
T ss_pred HHHhcccHHHHHHHHHHHHHHhhccc
Confidence 99999999999999999988865443
No 187
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=95.14 E-value=0.32 Score=47.00 Aligned_cols=128 Identities=13% Similarity=0.238 Sum_probs=98.6
Q ss_pred HhhhcCChHHHHHhhccCC------hhHHHHHHHHHHHhccCCChhHHHhhhcccchHHHHHHhcCCC-CHHHHHHHHHH
Q 001833 674 TLTQCSAIPVLVQLCEHDN------ENVRANAVKLFCCLVDDGDEAIIREHVGQKCLETLVTIIQSSH-NEEEIASAMGI 746 (1008)
Q Consensus 674 ~i~e~~~i~~Lv~ll~~~~------~~v~~~a~~~L~~Ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~-~~~v~~~a~~~ 746 (1008)
.+...+|+..|+.+++++. .++...++.++..|- ++..-. -..+....+..++..+.... +..+...++.+
T Consensus 6 EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLM-eHg~vs-Wd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaI 83 (160)
T PF11841_consen 6 EFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELM-EHGIVS-WDTLSDSFIKKIASYVNSSAMDASILQRSLAI 83 (160)
T ss_pred HHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHH-hcCcCc-hhhccHHHHHHHHHHHccccccchHHHHHHHH
Confidence 3556678999999999886 377788888888887 332212 24456678888998888764 67888999999
Q ss_pred HhcCCC-ChhhHHHHHhcCCHHHHHHHhhCCCCCCCchhhHHHHHHHHHHHhcCCCCHHHHHHH
Q 001833 747 LSKLPE-VPQFTQWLLDAGALPIVLNFLKNGRQNDPNRFQVVENAVGALRRFTAPTNLEWQKRA 809 (1008)
Q Consensus 747 L~nL~~-~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~v~~~a~~aL~~L~~~~~~~~~~~l 809 (1008)
|-+++. ++.....+.+.=-++.|+..|+. .++.++.+++..+-.|-...+++-++.+
T Consensus 84 LEs~Vl~S~~ly~~V~~evt~~~Li~hLq~------~~~~iq~naiaLinAL~~kA~~~~r~~i 141 (160)
T PF11841_consen 84 LESIVLNSPKLYQLVEQEVTLESLIRHLQV------SNQEIQTNAIALINALFLKADDSKRKEI 141 (160)
T ss_pred HHHHHhCCHHHHHHHhccCCHHHHHHHHHc------CCHHHHHHHHHHHHHHHhcCChHHHHHH
Confidence 999988 66667777777788999999999 6788999999988888776555555444
No 188
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=95.11 E-value=0.4 Score=48.25 Aligned_cols=90 Identities=19% Similarity=0.193 Sum_probs=71.2
Q ss_pred hhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHHHhhcCChHHHHHHHHHHhhhhhcCCCCCCCCCCCCcccccCCC
Q 001833 784 FQVVENAVGALRRFTAPTNLEWQKRAAEAGVIPKLVQLLEYGTTLTKEHAATSLARFSKNSLGLSRPIPKRKGFWCFSPP 863 (1008)
Q Consensus 784 ~~v~~~a~~aL~~L~~~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~v~~~Aa~aL~nLs~~~~~l~~~~~~~~g~~~~~~~ 863 (1008)
+.+|-+++.+++-|+.. .+... ...+|.+...|++.++.||+.|..+|.+|...... |..|
T Consensus 2 ~~vR~n~i~~l~DL~~r-~~~~v-----e~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~i------k~k~------- 62 (178)
T PF12717_consen 2 PSVRNNAIIALGDLCIR-YPNLV-----EPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMI------KVKG------- 62 (178)
T ss_pred HHHHHHHHHHHHHHHHh-CcHHH-----HhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCce------eehh-------
Confidence 57899999999999876 34443 23478999999999999999999999999843211 1111
Q ss_pred CCCcccccCcccCcccchhHhhccchHHHHHhhcCCChhhhHHHHHHHHhhh
Q 001833 864 PEIGCQVHGGLCGIESSFCLLEANAVRPLVRVLEDPDHGACEASLDALVTLI 915 (1008)
Q Consensus 864 ~~~~c~vh~~~c~~~~~~~l~~~g~i~~Lv~lL~~~d~~v~~~al~aL~~L~ 915 (1008)
..+..++.++.++|++|+..|...+..+.
T Consensus 63 -----------------------~l~~~~l~~l~D~~~~Ir~~A~~~~~e~~ 91 (178)
T PF12717_consen 63 -----------------------QLFSRILKLLVDENPEIRSLARSFFSELL 91 (178)
T ss_pred -----------------------hhhHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 23377788889999999999999999998
No 189
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=95.10 E-value=0.23 Score=47.99 Aligned_cols=122 Identities=11% Similarity=0.196 Sum_probs=96.3
Q ss_pred HHhhcCcHHHHHHHhccCCH------HHHHHHHHHHHHhhCCCchhHHHHhcCChHHHHHHhcccCCCCcchHHHHHHHH
Q 001833 538 SLLEGNVLGPLLHLVSRGDI------QMKKVAVKALRNLSSVPQNGLQMIKEGAVGPLVDLLLHHSSSSSSLREETATAI 611 (1008)
Q Consensus 538 ~i~~~g~i~~Lv~lL~~~~~------~~~~~A~~aL~~L~~~~~~~~~i~~~G~v~~Ll~ll~~~~~~~~~~~~~a~~~L 611 (1008)
.+.+.||+..|++++.+++. .....++.++..|-.+.-.....+....|..++..+.....+ +.+.+.|+.+|
T Consensus 6 EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsWd~l~~~FI~Kia~~Vn~~~~d-~~i~q~sLaIL 84 (160)
T PF11841_consen 6 EFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSWDTLSDSFIKKIASYVNSSAMD-ASILQRSLAIL 84 (160)
T ss_pred HHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCchhhccHHHHHHHHHHHcccccc-chHHHHHHHHH
Confidence 35678899999999998763 566778888888877665556666666788888888755543 78999999999
Q ss_pred HHHhccccccccCCcccccccchhHHHHHHHhhccCChHHHHHHHHHHHHhccCC
Q 001833 612 MHLAVSTMYQESSQTPVTLLESDKEIFMLFSLINLTGPNVQQRILQTFNALCRSP 666 (1008)
Q Consensus 612 ~nLa~~~~~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~aL~~L~~~~ 666 (1008)
-+++.++..... .+..+-.++.|+..+..+++++|.+++..+-.|....
T Consensus 85 Es~Vl~S~~ly~------~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA 133 (160)
T PF11841_consen 85 ESIVLNSPKLYQ------LVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKA 133 (160)
T ss_pred HHHHhCCHHHHH------HHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcC
Confidence 999987765443 5556667899999999999999999999888887654
No 190
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=95.08 E-value=0.7 Score=50.87 Aligned_cols=201 Identities=14% Similarity=0.108 Sum_probs=117.0
Q ss_pred HHHHHHhhccCChHHHHHHHHHHHHhccCCChhhHHHHhhhcCChHHHHHhhccCChhHHHHHHHHHHHhcc-CCChhHH
Q 001833 637 IFMLFSLINLTGPNVQQRILQTFNALCRSPSAGNIKTTLTQCSAIPVLVQLCEHDNENVRANAVKLFCCLVD-DGDEAII 715 (1008)
Q Consensus 637 i~~L~~ll~~~~~~v~~~al~aL~~L~~~~~~~~~~~~i~e~~~i~~Lv~ll~~~~~~v~~~a~~~L~~Ls~-~~~~~~~ 715 (1008)
+...+..+.......|+.++..+.++..+.-..+....-. .-.+..+...++.+..+-+..|+.++..++- -+.....
T Consensus 45 L~~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~-~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~ 123 (309)
T PF05004_consen 45 LKEAIDLLTEKSSSTREAALEALIRALSSRYLPDFVEDRR-ETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDS 123 (309)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccHHHHHHHH-HHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccH
Confidence 3444555556778899999999999876432222111111 1246677777777776667778787777652 2222233
Q ss_pred HhhhcccchHHHHHHhcCCC-CHHHHHHHHHHHhcCCC----ChhhHHHHHhcCCHH--HHHHHhhCCCC----CCCchh
Q 001833 716 REHVGQKCLETLVTIIQSSH-NEEEIASAMGILSKLPE----VPQFTQWLLDAGALP--IVLNFLKNGRQ----NDPNRF 784 (1008)
Q Consensus 716 ~~~~~~~~i~~Lv~lL~~~~-~~~v~~~a~~~L~nL~~----~~~~~~~l~~~g~l~--~Lv~lL~~~~~----~~~~~~ 784 (1008)
..+++ ...+.|.+++.+++ ....+..++.+|+-++. +++...... ..+. ......+.+.. ...+++
T Consensus 124 ~ei~~-~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~--~~le~if~~~~~~~~~~~~~~~~~~~~ 200 (309)
T PF05004_consen 124 EEIFE-ELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELM--ESLESIFLLSILKSDGNAPVVAAEDDA 200 (309)
T ss_pred HHHHH-HHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHH--HHHHHHHHHHhcCcCCCcccccCCCcc
Confidence 33332 56788888888764 34555566655555433 333222111 1222 11122222111 112346
Q ss_pred hHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHHHhhcCChHHHHHHHHHHhhhhh
Q 001833 785 QVVENAVGALRRFTAPTNLEWQKRAAEAGVIPKLVQLLEYGTTLTKEHAATSLARFSK 842 (1008)
Q Consensus 785 ~v~~~a~~aL~~L~~~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~v~~~Aa~aL~nLs~ 842 (1008)
.+.-+|+.+.+-|....+....... -...+|.|..+|.+++.+||..|..+|+-+-.
T Consensus 201 ~l~~aAL~aW~lLlt~~~~~~~~~~-~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E 257 (309)
T PF05004_consen 201 ALVAAALSAWALLLTTLPDSKLEDL-LEEALPALSELLDSDDVDVRIAAGEAIALLYE 257 (309)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHH-HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 7888888877777654233222222 23458999999999999999999999998864
No 191
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=95.06 E-value=0.087 Score=46.87 Aligned_cols=63 Identities=17% Similarity=0.382 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHhccCCChhhHHHHhhhcCChHHHHHhhccC--ChhHHHHHHHHHHHhccCCChhHHH
Q 001833 651 VQQRILQTFNALCRSPSAGNIKTTLTQCSAIPVLVQLCEHD--NENVRANAVKLFCCLVDDGDEAIIR 716 (1008)
Q Consensus 651 v~~~al~aL~~L~~~~~~~~~~~~i~e~~~i~~Lv~ll~~~--~~~v~~~a~~~L~~Ls~~~~~~~~~ 716 (1008)
.+..+++++.+||.. ++.+++.+++.|+++.++..+..+ +|-+++.|.+++.+|+ .+++++..
T Consensus 2 ~K~~lvrlianl~~~--~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~-e~n~eNQ~ 66 (102)
T PF09759_consen 2 FKRDLVRLIANLCYK--NKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLC-EGNPENQE 66 (102)
T ss_pred cHHHHHHHHHHHHhC--CHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHH-hCCHHHHH
Confidence 356788999999974 789999999999999999988765 7999999999999999 55554443
No 192
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.05 E-value=0.016 Score=64.58 Aligned_cols=68 Identities=22% Similarity=0.359 Sum_probs=53.4
Q ss_pred CCccccccccccccCCceeccCcccccHHHHHHHHhcCCCCCCCcCccCCCCC-----CccCHhhHHHHHHHHH
Q 001833 262 PLQSFYCPITRDVMVDPVETSSGQTFERSAIEKWFSDGNNLCPLTMTVLDTSI-----LRPNKTLRQSIEEWKD 330 (1008)
Q Consensus 262 ~~~~~~cpi~~~~m~dpv~~~~g~t~~r~~i~~w~~~~~~~cp~~~~~l~~~~-----l~pN~~l~~~I~~w~~ 330 (1008)
.+.+|-|-+|...+.+||+++|||+||+.||.+-++ ....||.|+.++.+.. ..+|..++.+|..|+.
T Consensus 81 ~~sef~c~vc~~~l~~pv~tpcghs~c~~Cl~r~ld-~~~~cp~Cr~~l~e~~~~~~~~~~~r~~~~li~~F~~ 153 (398)
T KOG4159|consen 81 IRSEFECCVCSRALYPPVVTPCGHSFCLECLDRSLD-QETECPLCRDELVELPALEQALSLNRLLCKLITKFLE 153 (398)
T ss_pred ccchhhhhhhHhhcCCCccccccccccHHHHHHHhc-cCCCCcccccccccchHHHHHHHHHHHHHHHHHHhhh
Confidence 468999999999999999999999999999999776 4567999988776422 2245555666666654
No 193
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=95.04 E-value=0.44 Score=52.75 Aligned_cols=228 Identities=11% Similarity=0.153 Sum_probs=155.5
Q ss_pred hhhcCChHHHHHhhccCChhHHHHHHHHHHHhccCCChhH---HHhhhcccchHHHHHHhcCCCCHHHHHHHHHHHhcCC
Q 001833 675 LTQCSAIPVLVQLCEHDNENVRANAVKLFCCLVDDGDEAI---IREHVGQKCLETLVTIIQSSHNEEEIASAMGILSKLP 751 (1008)
Q Consensus 675 i~e~~~i~~Lv~ll~~~~~~v~~~a~~~L~~Ls~~~~~~~---~~~~~~~~~i~~Lv~lL~~~~~~~v~~~a~~~L~nL~ 751 (1008)
+...+.+..|+..+..-+-+.|..++.+..++.....+.. ....+.......|..++...+++++-..+-.+|..+.
T Consensus 72 i~~~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~~~dial~~g~mlRec~ 151 (335)
T PF08569_consen 72 IYRSDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYENPDIALNCGDMLRECI 151 (335)
T ss_dssp HHHHTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGGSTTTHHHHHHHHHHHT
T ss_pred HHHhCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhcCccccchHHHHHHHHH
Confidence 4445788999999999999999999999999874332221 1122222223333334444344556677778888888
Q ss_pred CChhhHHHHHhcCCHHHHHHHhhCCCCCCCchhhHHHHHHHHHHHhcCCCCHHHHHHHHHc---CChHHHHHHhhcCChH
Q 001833 752 EVPQFTQWLLDAGALPIVLNFLKNGRQNDPNRFQVVENAVGALRRFTAPTNLEWQKRAAEA---GVIPKLVQLLEYGTTL 828 (1008)
Q Consensus 752 ~~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~v~~~a~~aL~~L~~~~~~~~~~~l~~~---g~l~~Lv~lL~~~~~~ 828 (1008)
..+...+.+.....+..+.+.... +.-++.-.|..++..+-.. ++......... .++.....+|.+++--
T Consensus 152 k~e~l~~~iL~~~~f~~ff~~~~~------~~Fdiasdaf~t~~~llt~-hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYv 224 (335)
T PF08569_consen 152 KHESLAKIILYSECFWKFFKYVQL------PNFDIASDAFSTFKELLTR-HKKLVAEFLSNNYDRFFQKYNKLLESSNYV 224 (335)
T ss_dssp TSHHHHHHHHTSGGGGGHHHHTTS------SSHHHHHHHHHHHHHHHHS-SHHHHHHHHHHTHHHHHHHHHHHCT-SSHH
T ss_pred hhHHHHHHHhCcHHHHHHHHHhcC------CccHhHHHHHHHHHHHHhc-cHHHHHHHHHHHHHHHHHHHHHHccCCCeE
Confidence 899989999999999999999988 6788888888888885554 67665555544 3566788899999999
Q ss_pred HHHHHHHHHhhhhhcCCCCCCCCCCCCcccccCCCCCCcccccCcccCcccchhHhhccchHHHHHhhcCCChhhhHHHH
Q 001833 829 TKEHAATSLARFSKNSLGLSRPIPKRKGFWCFSPPPEIGCQVHGGLCGIESSFCLLEANAVRPLVRVLEDPDHGACEASL 908 (1008)
Q Consensus 829 v~~~Aa~aL~nLs~~~~~l~~~~~~~~g~~~~~~~~~~~c~vh~~~c~~~~~~~l~~~g~i~~Lv~lL~~~d~~v~~~al 908 (1008)
+|+.+...|+.+..+..+ ..=...++-+..-++.++.+|.++...++..|.
T Consensus 225 tkrqslkLL~ellldr~n-----------------------------~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAF 275 (335)
T PF08569_consen 225 TKRQSLKLLGELLLDRSN-----------------------------FNVMTRYISSPENLKLMMNLLRDKSKNIQFEAF 275 (335)
T ss_dssp HHHHHHHHHHHHHHSGGG-----------------------------HHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHH
T ss_pred eehhhHHHHHHHHHchhH-----------------------------HHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHH
Confidence 999999999999853321 000123344456788899999999999999999
Q ss_pred HHHHhhh-cccccchhhHHHHhcCchHHHHHHh
Q 001833 909 DALVTLI-EGERLQNGSKVLEDANAIDRMVRFL 940 (1008)
Q Consensus 909 ~aL~~L~-~~~~~~~~~~~i~~~~~i~~l~~ll 940 (1008)
..+.-++ ++.+..+....+... =++|++++
T Consensus 276 hvFKvFVANp~K~~~I~~iL~~N--r~kLl~fl 306 (335)
T PF08569_consen 276 HVFKVFVANPNKPPPIVDILIKN--REKLLRFL 306 (335)
T ss_dssp HHHHHHHH-SS-BHHHHHHHHHT--HHHHHHHH
T ss_pred HHHHHHHhCCCCChHHHHHHHHH--HHHHHHHH
Confidence 9999999 777666666655544 23444444
No 194
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=95.01 E-value=0.011 Score=62.43 Aligned_cols=63 Identities=21% Similarity=0.436 Sum_probs=49.8
Q ss_pred ccccccccccccCCceecc-CcccccHHHHHHHHhcCCCCCCCcCccCCCCCC----ccCHhhHHHHHH
Q 001833 264 QSFYCPITRDVMVDPVETS-SGQTFERSAIEKWFSDGNNLCPLTMTVLDTSIL----RPNKTLRQSIEE 327 (1008)
Q Consensus 264 ~~~~cpi~~~~m~dpv~~~-~g~t~~r~~i~~w~~~~~~~cp~~~~~l~~~~l----~pN~~l~~~I~~ 327 (1008)
.+..|++|.-.|.|+-++. |=|||||+||-++|.. ..+||.|+-.+..... .+..+|+..+..
T Consensus 14 ~~itC~LC~GYliDATTI~eCLHTFCkSCivk~l~~-~~~CP~C~i~ih~t~pl~ni~~DrtlqdiVyK 81 (331)
T KOG2660|consen 14 PHITCRLCGGYLIDATTITECLHTFCKSCIVKYLEE-SKYCPTCDIVIHKTHPLLNIRSDRTLQDIVYK 81 (331)
T ss_pred cceehhhccceeecchhHHHHHHHHHHHHHHHHHHH-hccCCccceeccCccccccCCcchHHHHHHHH
Confidence 3689999999999999885 8899999999999988 7789999877765543 444555544443
No 195
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=94.98 E-value=0.058 Score=49.26 Aligned_cols=71 Identities=17% Similarity=0.432 Sum_probs=59.5
Q ss_pred cchHHHHHhhc-CCChhhhHHHHHHHHhhhcccccchhhHHHHhcCchHHHHHHhcCCChHHHHHHHHHHHHHh
Q 001833 887 NAVRPLVRVLE-DPDHGACEASLDALVTLIEGERLQNGSKVLEDANAIDRMVRFLSSPSPKLQEKALDSVERIF 959 (1008)
Q Consensus 887 g~i~~Lv~lL~-~~d~~v~~~al~aL~~L~~~~~~~~~~~~i~~~~~i~~l~~ll~~~~~~l~~~a~~~L~~l~ 959 (1008)
..++.|+++|. +.|+.+...|+.=|..++ .....++..+.+.|+-..+++++.++|++|+..|+.++.++.
T Consensus 43 ~llk~L~~lL~~s~d~~~laVac~Dig~~v--r~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm 114 (119)
T PF11698_consen 43 ELLKKLIKLLDKSDDPTTLAVACHDIGEFV--RHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLM 114 (119)
T ss_dssp HHHHHHHHHH-SHHHHHHHHHHHHHHHHHH--HH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCCCcceeehhhcchHHHH--HHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 47899999994 567888888999999999 112378888999999999999999999999999999998875
No 196
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=94.61 E-value=2.1 Score=48.53 Aligned_cols=123 Identities=12% Similarity=0.153 Sum_probs=91.4
Q ss_pred HHHHHHHHHHhcc-CCChhhHHHHhhh-cCChHHHHHhhccC---ChhHHHHHHHHHHHhccCCChhHHHhhhcccchHH
Q 001833 652 QQRILQTFNALCR-SPSAGNIKTTLTQ-CSAIPVLVQLCEHD---NENVRANAVKLFCCLVDDGDEAIIREHVGQKCLET 726 (1008)
Q Consensus 652 ~~~al~aL~~L~~-~~~~~~~~~~i~e-~~~i~~Lv~ll~~~---~~~v~~~a~~~L~~Ls~~~~~~~~~~~~~~~~i~~ 726 (1008)
..+.++.+..+.. .+...+.-+-+.+ ......|..++++. .+.+-..|+.++..+. ..++.....+.+.|.++.
T Consensus 77 lK~lLk~l~~~~~~~~~~~~~lrnl~D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I-~nePT~~~~l~e~Gl~~~ 155 (379)
T PF06025_consen 77 LKSLLKFLSHAMQHSGGFGDRLRNLIDSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFI-HNEPTSFSILQEAGLIDA 155 (379)
T ss_pred HHHHHHHHHHHhccCCCcccccccccchhhHHHHHHHHHhCccccchHHHHHHHHHHHHHH-hcCCchhHHHHHcCChHH
Confidence 3445555666665 3333332233334 45567777777776 5788888999999988 666777777888999999
Q ss_pred HHHHhc-CC--CCHHHHHHHHHHHhcCCCChhhHHHHHhcCCHHHHHHHhhC
Q 001833 727 LVTIIQ-SS--HNEEEIASAMGILSKLPEVPQFTQWLLDAGALPIVLNFLKN 775 (1008)
Q Consensus 727 Lv~lL~-~~--~~~~v~~~a~~~L~nL~~~~~~~~~l~~~g~l~~Lv~lL~~ 775 (1008)
+++.+. .. ...++....-.+|+.||-+....+.+.+.+.++.+++++.+
T Consensus 156 ~L~~i~~~~i~~s~e~l~~lP~~l~AicLN~~Gl~~~~~~~~l~~~f~if~s 207 (379)
T PF06025_consen 156 FLDAITAKGILPSSEVLTSLPNVLSAICLNNRGLEKVKSSNPLDKLFEIFTS 207 (379)
T ss_pred HHHHHhccCCCCcHHHHHHHHHHHhHHhcCHHHHHHHHhcChHHHHHHHhCC
Confidence 999888 43 45567777778889999999999999999999999999988
No 197
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.58 E-value=0.022 Score=57.12 Aligned_cols=31 Identities=35% Similarity=0.572 Sum_probs=29.5
Q ss_pred cccccccccCCceeccCcccccHHHHHHHHh
Q 001833 267 YCPITRDVMVDPVETSSGQTFERSAIEKWFS 297 (1008)
Q Consensus 267 ~cpi~~~~m~dpv~~~~g~t~~r~~i~~w~~ 297 (1008)
+|.+|++..+|||+.+.||-|||.+|-+++-
T Consensus 45 cCsLtLqPc~dPvit~~GylfdrEaILe~il 75 (303)
T KOG3039|consen 45 CCSLTLQPCRDPVITPDGYLFDREAILEYIL 75 (303)
T ss_pred eeeeecccccCCccCCCCeeeeHHHHHHHHH
Confidence 7899999999999999999999999999874
No 198
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=94.56 E-value=0.5 Score=56.31 Aligned_cols=245 Identities=14% Similarity=0.110 Sum_probs=151.0
Q ss_pred hCCCchhHHHHhcCChHHHHHHhcccCCCCcchHHHHHHHHH-HHhccccccccCCcccccccchhHHHHHHHhhccCCh
Q 001833 571 SSVPQNGLQMIKEGAVGPLVDLLLHHSSSSSSLREETATAIM-HLAVSTMYQESSQTPVTLLESDKEIFMLFSLINLTGP 649 (1008)
Q Consensus 571 ~~~~~~~~~i~~~G~v~~Ll~ll~~~~~~~~~~~~~a~~~L~-nLa~~~~~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~ 649 (1008)
|.....+...++.|+...|+.+..... ...+-.+..+|. .+..... ...+.++++...++....
T Consensus 491 A~~K~~~~~~Ik~~~~~aLlrl~~~q~---e~akl~~~~aL~~~i~f~~~------------~~~~v~~~~~s~~~~d~~ 555 (748)
T KOG4151|consen 491 AKEKYERAKKIKPGGYEALLRLGQQQF---EEAKLKWYHALAGKIDFPGE------------RSYEVVKPLDSALHNDEK 555 (748)
T ss_pred hhhHHhcCccccccHHHHHHHHHHHhc---hHHHHHHHHHHhhhcCCCCC------------chhhhhhhhcchhhhhHH
Confidence 345556777889999999999998776 345666666666 2211110 012334444444432222
Q ss_pred HHH-HHHHHHHHHhccCCChhhHHHHhhhcCChHHHHHhhccCChhHHHHHHHHHHHhccCCChhHHHhhhcc-cchHHH
Q 001833 650 NVQ-QRILQTFNALCRSPSAGNIKTTLTQCSAIPVLVQLCEHDNENVRANAVKLFCCLVDDGDEAIIREHVGQ-KCLETL 727 (1008)
Q Consensus 650 ~v~-~~al~aL~~L~~~~~~~~~~~~i~e~~~i~~Lv~ll~~~~~~v~~~a~~~L~~Ls~~~~~~~~~~~~~~-~~i~~L 727 (1008)
... -..+.++.||++..++ .+..+...-+++.+-.++...++..+.+++..+.||. .++.-....+.+. ..++..
T Consensus 556 ~~en~E~L~altnLas~s~s--~r~~i~ke~~~~~ie~~~~ee~~~lqraa~e~~~NLl-~~~~~~e~si~e~~~~l~~w 632 (748)
T KOG4151|consen 556 GLENFEALEALTNLASISES--DRQKILKEKALGKIEELMTEENPALQRAALESIINLL-WSPLLYERSIVEYKDRLKLW 632 (748)
T ss_pred HHHHHHHHHHhhcccCcchh--hHHHHHHHhcchhhHHHhhcccHHHHHHHHHHHHHHH-hhHHHHHHHhhccccCchHH
Confidence 221 2478888998886433 3344555455777778888889999999999999997 5544333444442 334444
Q ss_pred HHHhcCCCCHHHHHHHHHHHhcCCC-ChhhHH-HHHhcCCHHHHHHHhhCCCCCCCchhhHHHHHHHHHHHhcCCCCHHH
Q 001833 728 VTIIQSSHNEEEIASAMGILSKLPE-VPQFTQ-WLLDAGALPIVLNFLKNGRQNDPNRFQVVENAVGALRRFTAPTNLEW 805 (1008)
Q Consensus 728 v~lL~~~~~~~v~~~a~~~L~nL~~-~~~~~~-~l~~~g~l~~Lv~lL~~~~~~~~~~~~v~~~a~~aL~~L~~~~~~~~ 805 (1008)
...+.. .+.....++++++..+.. ...... ..--......++.++.+ .+..++...+....|+... ..+.
T Consensus 633 ~~~~e~-~~E~~~lA~a~a~a~I~sv~~n~c~~~~~~~~~~e~~~~~i~~------~~~~~qhrgl~~~ln~~~~-~~ei 704 (748)
T KOG4151|consen 633 NLNLEV-ADEKFELAGAGALAAITSVVENHCSRILELLEWLEILVRAIQD------EDDEIQHRGLVIILNLFEA-LFEI 704 (748)
T ss_pred HHHHHh-hhhHHhhhccccccchhhcchhhhhhHHHhhcchHHHHHhhcC------chhhhhhhhhhhhhhHHHH-HHHH
Confidence 444433 344455566667765655 333333 33345567788888888 6788888888888885554 5666
Q ss_pred HHHHHHcCChHHHHHHhhcCChHHHHHHHHHHhhhh
Q 001833 806 QKRAAEAGVIPKLVQLLEYGTTLTKEHAATSLARFS 841 (1008)
Q Consensus 806 ~~~l~~~g~l~~Lv~lL~~~~~~v~~~Aa~aL~nLs 841 (1008)
...+.....++.+..+-.-.....++.++.+|...-
T Consensus 705 ~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~~l~~a~ 740 (748)
T KOG4151|consen 705 AEKIFETEVMELLSGLQKLNRAPKREDAAPCLSAAE 740 (748)
T ss_pred HHHhccchHHHHHHHHHHhhhhhhhhhhhhHHHHHH
Confidence 666777777776655544444566777777776554
No 199
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=94.43 E-value=0.043 Score=46.40 Aligned_cols=47 Identities=23% Similarity=0.406 Sum_probs=35.9
Q ss_pred cccccccccccCC-ceec-cCcccccHHHHHHHHhc--CCCCCCCcCccCC
Q 001833 265 SFYCPITRDVMVD-PVET-SSGQTFERSAIEKWFSD--GNNLCPLTMTVLD 311 (1008)
Q Consensus 265 ~~~cpi~~~~m~d-pv~~-~~g~t~~r~~i~~w~~~--~~~~cp~~~~~l~ 311 (1008)
+-.||.+...=.| |++. .|||.|-..||.+|++. +...||++|++..
T Consensus 32 dg~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~ 82 (85)
T PF12861_consen 32 DGCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWK 82 (85)
T ss_pred ccCCCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCeee
Confidence 3456666665445 6555 69999999999999984 4679999998764
No 200
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=94.40 E-value=0.054 Score=60.08 Aligned_cols=51 Identities=24% Similarity=0.393 Sum_probs=44.1
Q ss_pred CccccccccccccCCceeccCcccccHHHHHHHHh----cCCCCCCCcCccCCCC
Q 001833 263 LQSFYCPITRDVMVDPVETSSGQTFERSAIEKWFS----DGNNLCPLTMTVLDTS 313 (1008)
Q Consensus 263 ~~~~~cpi~~~~m~dpv~~~~g~t~~r~~i~~w~~----~~~~~cp~~~~~l~~~ 313 (1008)
..+..|.+|.+.-.||+..+|.|+|||.||.++.. ..+.+||.|..+|+-.
T Consensus 534 k~~~~C~lc~d~aed~i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~LsiD 588 (791)
T KOG1002|consen 534 KGEVECGLCHDPAEDYIESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLSID 588 (791)
T ss_pred cCceeecccCChhhhhHhhhhhHHHHHHHHHHHHHhhhcccCCCCcccccccccc
Confidence 36789999999999999999999999999999875 2457999998888644
No 201
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=94.39 E-value=0.35 Score=57.54 Aligned_cols=202 Identities=15% Similarity=0.127 Sum_probs=141.0
Q ss_pred hhHHHHhhhcCChHHHHHhhccCChhHHHHHHHHHH-HhccCCChhHHHhhhcccchHHHHHHhcCCCCHHHHHHHHHHH
Q 001833 669 GNIKTTLTQCSAIPVLVQLCEHDNENVRANAVKLFC-CLVDDGDEAIIREHVGQKCLETLVTIIQSSHNEEEIASAMGIL 747 (1008)
Q Consensus 669 ~~~~~~i~e~~~i~~Lv~ll~~~~~~v~~~a~~~L~-~Ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~v~~~a~~~L 747 (1008)
+.-+......|+...|+.+...+.++.+.....+|. .+... .. .-..+++.+.+.++.....-....++-++
T Consensus 494 K~~~~~~Ik~~~~~aLlrl~~~q~e~akl~~~~aL~~~i~f~-~~------~~~~v~~~~~s~~~~d~~~~en~E~L~al 566 (748)
T KOG4151|consen 494 KYERAKKIKPGGYEALLRLGQQQFEEAKLKWYHALAGKIDFP-GE------RSYEVVKPLDSALHNDEKGLENFEALEAL 566 (748)
T ss_pred HHhcCccccccHHHHHHHHHHHhchHHHHHHHHHHhhhcCCC-CC------chhhhhhhhcchhhhhHHHHHHHHHHHHh
Confidence 334445566789999999999999998888888887 33311 11 01235555655555543333445788899
Q ss_pred hcCCC-ChhhHHHHHhcCCHHHHHHHhhCCCCCCCchhhHHHHHHHHHHHhcCCCCHHHHHHHHH-cCChHHHHHHhhcC
Q 001833 748 SKLPE-VPQFTQWLLDAGALPIVLNFLKNGRQNDPNRFQVVENAVGALRRFTAPTNLEWQKRAAE-AGVIPKLVQLLEYG 825 (1008)
Q Consensus 748 ~nL~~-~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~v~~~a~~aL~~L~~~~~~~~~~~l~~-~g~l~~Lv~lL~~~ 825 (1008)
.||++ +...+..+++.-+++.+-.++-. .++..+..++..+.||..+ ..-+.+.+.+ ....|.....+...
T Consensus 567 tnLas~s~s~r~~i~ke~~~~~ie~~~~e------e~~~lqraa~e~~~NLl~~-~~~~e~si~e~~~~l~~w~~~~e~~ 639 (748)
T KOG4151|consen 567 TNLASISESDRQKILKEKALGKIEELMTE------ENPALQRAALESIINLLWS-PLLYERSIVEYKDRLKLWNLNLEVA 639 (748)
T ss_pred hcccCcchhhHHHHHHHhcchhhHHHhhc------ccHHHHHHHHHHHHHHHhh-HHHHHHHhhccccCchHHHHHHHhh
Confidence 99988 77777778888888888877777 6889999999999999996 4445555666 56677777777776
Q ss_pred ChHHHHHHHHHHhhhhhcCCCCCCCCCCCCcccccCCCCCCcccccCcccCcccchhHhhccchHHHHHhhcCCChhhhH
Q 001833 826 TTLTKEHAATSLARFSKNSLGLSRPIPKRKGFWCFSPPPEIGCQVHGGLCGIESSFCLLEANAVRPLVRVLEDPDHGACE 905 (1008)
Q Consensus 826 ~~~v~~~Aa~aL~nLs~~~~~l~~~~~~~~g~~~~~~~~~~~c~vh~~~c~~~~~~~l~~~g~i~~Lv~lL~~~d~~v~~ 905 (1008)
+.....+++.++..+..-+.+ .| + . .+.-...-..++.++.+.++++++
T Consensus 640 ~E~~~lA~a~a~a~I~sv~~n--------------------~c-------~-~---~~~~~~~~e~~~~~i~~~~~~~qh 688 (748)
T KOG4151|consen 640 DEKFELAGAGALAAITSVVEN--------------------HC-------S-R---ILELLEWLEILVRAIQDEDDEIQH 688 (748)
T ss_pred hhHHhhhccccccchhhcchh--------------------hh-------h-h---HHHhhcchHHHHHhhcCchhhhhh
Confidence 777777777777766532221 11 1 0 122234567778888999999999
Q ss_pred HHHHHHHhhh
Q 001833 906 ASLDALVTLI 915 (1008)
Q Consensus 906 ~al~aL~~L~ 915 (1008)
..+....|+.
T Consensus 689 rgl~~~ln~~ 698 (748)
T KOG4151|consen 689 RGLVIILNLF 698 (748)
T ss_pred hhhhhhhhHH
Confidence 9999888855
No 202
>KOG2979 consensus Protein involved in DNA repair [General function prediction only]
Probab=94.37 E-value=0.034 Score=56.82 Aligned_cols=46 Identities=26% Similarity=0.430 Sum_probs=39.4
Q ss_pred ccccccccccccCCceec-cCcccccHHHHHHHHhc-CCCCCCCcCcc
Q 001833 264 QSFYCPITRDVMVDPVET-SSGQTFERSAIEKWFSD-GNNLCPLTMTV 309 (1008)
Q Consensus 264 ~~~~cpi~~~~m~dpv~~-~~g~t~~r~~i~~w~~~-~~~~cp~~~~~ 309 (1008)
-+++||||......||+- .|||-|+|..|+..+.. -...||+-|.+
T Consensus 175 fs~rdPis~~~I~nPviSkkC~HvydrDsI~~~l~~~~~i~CPv~gC~ 222 (262)
T KOG2979|consen 175 FSNRDPISKKPIVNPVISKKCGHVYDRDSIMQILCDEITIRCPVLGCE 222 (262)
T ss_pred hcccCchhhhhhhchhhhcCcCcchhhhhHHHHhccCceeecccccCC
Confidence 478999999999999996 59999999999999853 24569998876
No 203
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=94.25 E-value=21 Score=45.04 Aligned_cols=133 Identities=17% Similarity=0.185 Sum_probs=100.6
Q ss_pred chHHHHHHhcCC---CCHHHHHHHHHHHhcCCC-ChhhHHHHHhcCCHHHHHHHhhCCCCCCCchhhHHHHHHHHHHHhc
Q 001833 723 CLETLVTIIQSS---HNEEEIASAMGILSKLPE-VPQFTQWLLDAGALPIVLNFLKNGRQNDPNRFQVVENAVGALRRFT 798 (1008)
Q Consensus 723 ~i~~Lv~lL~~~---~~~~v~~~a~~~L~nL~~-~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~v~~~a~~aL~~L~ 798 (1008)
..|.++.++.++ ++++.+.+|.-+|+.+.. +.+... ..+|.++..+... +++.+|-+++-+++-|+
T Consensus 920 f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~fce-----s~l~llftimeks-----p~p~IRsN~VvalgDla 989 (1251)
T KOG0414|consen 920 FAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISAEFCE-----SHLPLLFTIMEKS-----PSPRIRSNLVVALGDLA 989 (1251)
T ss_pred HHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHHHHH-----HHHHHHHHHHhcC-----CCceeeecchheccchh
Confidence 567777777655 578899999999998865 444432 3478899999853 67889999999999998
Q ss_pred CCCCHHHHHHHHHcCChHHHHHHhhcCChHHHHHHHHHHhhhhhcCCCCCCCCCCCCcccccCCCCCCcccccCcccCcc
Q 001833 799 APTNLEWQKRAAEAGVIPKLVQLLEYGTTLTKEHAATSLARFSKNSLGLSRPIPKRKGFWCFSPPPEIGCQVHGGLCGIE 878 (1008)
Q Consensus 799 ~~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~v~~~Aa~aL~nLs~~~~~l~~~~~~~~g~~~~~~~~~~~c~vh~~~c~~~ 878 (1008)
.. -|.... -..+.|...|++.++.||+.|...|.+|-.+..
T Consensus 990 v~-fpnlie-----~~T~~Ly~rL~D~~~~vRkta~lvlshLILndm--------------------------------- 1030 (1251)
T KOG0414|consen 990 VR-FPNLIE-----PWTEHLYRRLRDESPSVRKTALLVLSHLILNDM--------------------------------- 1030 (1251)
T ss_pred hh-cccccc-----hhhHHHHHHhcCccHHHHHHHHHHHHHHHHhhh---------------------------------
Confidence 76 344332 245778899999999999999999999985431
Q ss_pred cchhHhhccchHHHHHhhcCCChhhhHHHH
Q 001833 879 SSFCLLEANAVRPLVRVLEDPDHGACEASL 908 (1008)
Q Consensus 879 ~~~~l~~~g~i~~Lv~lL~~~d~~v~~~al 908 (1008)
+--.|-+.-+..++.+++++++.-|-
T Consensus 1031 ----iKVKGql~eMA~cl~D~~~~IsdlAk 1056 (1251)
T KOG0414|consen 1031 ----IKVKGQLSEMALCLEDPNAEISDLAK 1056 (1251)
T ss_pred ----hHhcccHHHHHHHhcCCcHHHHHHHH
Confidence 22246777788888888888887776
No 204
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.24 E-value=0.02 Score=59.45 Aligned_cols=45 Identities=27% Similarity=0.399 Sum_probs=40.1
Q ss_pred ccccccccccCCceeccCcccccHHHHHHHHhcCCCCCCCcCccCC
Q 001833 266 FYCPITRDVMVDPVETSSGQTFERSAIEKWFSDGNNLCPLTMTVLD 311 (1008)
Q Consensus 266 ~~cpi~~~~m~dpv~~~~g~t~~r~~i~~w~~~~~~~cp~~~~~l~ 311 (1008)
|-|-||++.+.+||++.|||+||..|--+.+..|. .|++|++...
T Consensus 242 f~c~icr~~f~~pVvt~c~h~fc~~ca~~~~qk~~-~c~vC~~~t~ 286 (313)
T KOG1813|consen 242 FKCFICRKYFYRPVVTKCGHYFCEVCALKPYQKGE-KCYVCSQQTH 286 (313)
T ss_pred ccccccccccccchhhcCCceeehhhhccccccCC-cceecccccc
Confidence 88999999999999999999999999988887654 5999987764
No 205
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.21 E-value=0.031 Score=60.71 Aligned_cols=47 Identities=17% Similarity=0.376 Sum_probs=41.1
Q ss_pred ccccccccccCC---ceeccCcccccHHHHHHHHhcCCCCCCCcCccCCC
Q 001833 266 FYCPITRDVMVD---PVETSSGQTFERSAIEKWFSDGNNLCPLTMTVLDT 312 (1008)
Q Consensus 266 ~~cpi~~~~m~d---pv~~~~g~t~~r~~i~~w~~~~~~~cp~~~~~l~~ 312 (1008)
+.|-||+|-+.+ -.+++|+|.|-..||..|+.+...+||+|++....
T Consensus 230 ~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~r~~CPvCK~di~~ 279 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQTRTFCPVCKRDIRT 279 (348)
T ss_pred ceEEEeecccccCCeeeEecCCCchhhccchhhHhhcCccCCCCCCcCCC
Confidence 799999999984 56789999999999999998877789999886543
No 206
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=94.12 E-value=25 Score=45.50 Aligned_cols=146 Identities=12% Similarity=0.169 Sum_probs=92.7
Q ss_pred cchHHHHHHHhcCCChHHHHHHHHHHHhhcCCcccH--HHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHHcCC-hhhH
Q 001833 460 QGCILLLVTMASSDDNQASRDAQELLENLSFSDDNV--VQMAKANYFKHLLQRLSAGPESVKMRMATTLAEMELT-DHHK 536 (1008)
Q Consensus 460 ~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~~~n~--~~i~~~g~v~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~-~~~k 536 (1008)
.+.+..++..|..+...++-.|+.+|.++..-++.. ...+..| +-..+.+.+..+|+.|+..++..... ++.-
T Consensus 815 D~yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL~~~dvq~~----Vh~R~~DssasVREAaldLvGrfvl~~~e~~ 890 (1692)
T KOG1020|consen 815 DPYLKLILSVLGENAIALRTKALKCLSMIVEADPSVLSRPDVQEA----VHGRLNDSSASVREAALDLVGRFVLSIPELI 890 (1692)
T ss_pred HHHHHHHHHHhcCchHHHHHHHHHHHHHHHhcChHhhcCHHHHHH----HHHhhccchhHHHHHHHHHHhhhhhccHHHH
Confidence 356677778888888899999999999987655431 2222322 34455666788999999999875332 2222
Q ss_pred HHHhhcCcHHHHHHHhccCCHHHHHHHHHHHHHhhCCCchhHHHHhcCChHHHHHHhcccCCCCcchHHHHHHHHHHHhc
Q 001833 537 ASLLEGNVLGPLLHLVSRGDIQMKKVAVKALRNLSSVPQNGLQMIKEGAVGPLVDLLLHHSSSSSSLREETATAIMHLAV 616 (1008)
Q Consensus 537 ~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~~~~~~~i~~~G~v~~Ll~ll~~~~~~~~~~~~~a~~~L~nLa~ 616 (1008)
.. ...-+++-+.+....+|+.+.+.++.+|...++-..+ +....+++..-+++...+++.+..++.++=.
T Consensus 891 ~q-----yY~~i~erIlDtgvsVRKRvIKIlrdic~e~pdf~~i-----~~~cakmlrRv~DEEg~I~kLv~etf~klWF 960 (1692)
T KOG1020|consen 891 FQ-----YYDQIIERILDTGVSVRKRVIKILRDICEETPDFSKI-----VDMCAKMLRRVNDEEGNIKKLVRETFLKLWF 960 (1692)
T ss_pred HH-----HHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCChhhH-----HHHHHHHHHHhccchhHHHHHHHHHHHHHhc
Confidence 11 2234555556677889999999999999533322222 2344455554444424477888888887766
Q ss_pred ccc
Q 001833 617 STM 619 (1008)
Q Consensus 617 ~~~ 619 (1008)
.+.
T Consensus 961 ~p~ 963 (1692)
T KOG1020|consen 961 TPV 963 (1692)
T ss_pred cCC
Confidence 443
No 207
>PF04641 Rtf2: Rtf2 RING-finger
Probab=94.08 E-value=0.038 Score=59.20 Aligned_cols=52 Identities=21% Similarity=0.383 Sum_probs=42.3
Q ss_pred ccccccccccccCC---ce-eccCcccccHHHHHHHHhcCCCCCCCcCccCCCCCCcc
Q 001833 264 QSFYCPITRDVMVD---PV-ETSSGQTFERSAIEKWFSDGNNLCPLTMTVLDTSILRP 317 (1008)
Q Consensus 264 ~~~~cpi~~~~m~d---pv-~~~~g~t~~r~~i~~w~~~~~~~cp~~~~~l~~~~l~p 317 (1008)
..|+||||+..|.. =| +.+|||.|...+|++-- ....||+|++++...+++|
T Consensus 112 ~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~k--~~~~Cp~c~~~f~~~DiI~ 167 (260)
T PF04641_consen 112 GRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKELK--KSKKCPVCGKPFTEEDIIP 167 (260)
T ss_pred ceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhhc--ccccccccCCccccCCEEE
Confidence 57999999999964 23 34899999999999873 3456999999999887764
No 208
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.90 E-value=22 Score=44.01 Aligned_cols=321 Identities=11% Similarity=0.152 Sum_probs=162.2
Q ss_pred cchHHHHHHHhc------C--CChHHHHHHHHHHHhhcC---CcccHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHH
Q 001833 460 QGCILLLVTMAS------S--DDNQASRDAQELLENLSF---SDDNVVQMAKANYFKHLLQRLSAGPESVKMRMATTLAE 528 (1008)
Q Consensus 460 ~g~i~~Lv~lL~------~--~~~~~~~~a~~aL~~Ls~---~~~n~~~i~~~g~v~~Lv~~L~~~~~~~~~~aa~~L~~ 528 (1008)
+|.++.+++++. . .++....-|+.++.+|+. .+..-....+.=.++.+...++++..-+|..|++++..
T Consensus 409 ~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~hVfP~f~s~~g~Lrarac~vl~~ 488 (1010)
T KOG1991|consen 409 PKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQMEYFLVNHVFPEFQSPYGYLRARACWVLSQ 488 (1010)
T ss_pred hhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHHHhhHhhcCchhHHHHHHHHHHHH
Confidence 677888888887 2 356777888888888862 22222233344455666677788888899999999999
Q ss_pred HcCCh-hhHHHHhhcCcHHHHHHHhc-cCCHHHHHHHHHHHHHhhCCCchhHHHHhcC---ChHHHHHHhcccCCCCcch
Q 001833 529 MELTD-HHKASLLEGNVLGPLLHLVS-RGDIQMKKVAVKALRNLSSVPQNGLQMIKEG---AVGPLVDLLLHHSSSSSSL 603 (1008)
Q Consensus 529 Ls~~~-~~k~~i~~~g~i~~Lv~lL~-~~~~~~~~~A~~aL~~L~~~~~~~~~i~~~G---~v~~Ll~ll~~~~~~~~~~ 603 (1008)
++..+ .....+ ..++......|. +.+..++..|+-||..+-.+.+....-+.+- .+..|+.+.+....
T Consensus 489 ~~~~df~d~~~l--~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~ne~En----- 561 (1010)
T KOG1991|consen 489 FSSIDFKDPNNL--SEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVSAHVPPIMQELLKLSNEVEN----- 561 (1010)
T ss_pred HHhccCCChHHH--HHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHHHHhcch-----
Confidence 87433 222111 234455556666 6677899999999999876544333323332 33334444443221
Q ss_pred HHHHHHHHHHHhccccccccCCcccccccchhHHHHHHHhhccCChHHHHHHHHHHHHhccC---CChhhHHHHhhhcCC
Q 001833 604 REETATAIMHLAVSTMYQESSQTPVTLLESDKEIFMLFSLINLTGPNVQQRILQTFNALCRS---PSAGNIKTTLTQCSA 680 (1008)
Q Consensus 604 ~~~a~~~L~nLa~~~~~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~aL~~L~~~---~~~~~~~~~i~e~~~ 680 (1008)
+.-..++-.+.. .+-.-+..-.+++..+.+.++..+... .+...--+.+...|+
T Consensus 562 -d~Lt~vme~iV~----------------------~fseElsPfA~eL~q~La~~F~k~l~~~~~~~~~~ddk~iaA~Gi 618 (1010)
T KOG1991|consen 562 -DDLTNVMEKIVC----------------------KFSEELSPFAVELCQNLAETFLKVLQTSEDEDESDDDKAIAASGI 618 (1010)
T ss_pred -hHHHHHHHHHHH----------------------HHHHhhchhHHHHHHHHHHHHHHHHhccCCCCccchHHHHHHHHH
Confidence 111112222211 111111111123333334444443331 000011112222233
Q ss_pred hHHHHHhhccC--ChhHHHHHHHHHHHhccCCChhHHHhhhcccchHHHHHHhcCCCCHHHHHHHHHHHhcCCC-ChhhH
Q 001833 681 IPVLVQLCEHD--NENVRANAVKLFCCLVDDGDEAIIREHVGQKCLETLVTIIQSSHNEEEIASAMGILSKLPE-VPQFT 757 (1008)
Q Consensus 681 i~~Lv~ll~~~--~~~v~~~a~~~L~~Ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~v~~~a~~~L~nL~~-~~~~~ 757 (1008)
+..+..++.+- .+++.. -++.-.++.+-.+|.+ ...++-..++.++.++.. .++..
T Consensus 619 L~Ti~Til~s~e~~p~vl~--------------------~le~~~l~vi~~iL~~-~i~dfyeE~~ei~~~~t~~~~~Is 677 (1010)
T KOG1991|consen 619 LRTISTILLSLENHPEVLK--------------------QLEPIVLPVIGFILKN-DITDFYEELLEIVSSLTFLSKEIS 677 (1010)
T ss_pred HHHHHHHHHHHhccHHHHH--------------------HHHHHHHHHHHHHHHH-hhHHHHHHHHHHHhhhhhhhcccC
Confidence 33333322221 111111 1122233333344444 334556667777766655 44444
Q ss_pred HHHHhcCCHHHHHHHhhCCCCCCCchhhHHHHHHHHHHHhcCCCCHHHHHHHHHcCC----hHHHHHHhhc--CChHHHH
Q 001833 758 QWLLDAGALPIVLNFLKNGRQNDPNRFQVVENAVGALRRFTAPTNLEWQKRAAEAGV----IPKLVQLLEY--GTTLTKE 831 (1008)
Q Consensus 758 ~~l~~~g~l~~Lv~lL~~~~~~~~~~~~v~~~a~~aL~~L~~~~~~~~~~~l~~~g~----l~~Lv~lL~~--~~~~v~~ 831 (1008)
..++ |.++.+.+.+.+ ...+.-....-+|.|+..-+.+... ..... ...+-..|.+ +...-..
T Consensus 678 p~mW--~ll~li~e~~~~------~~~dyf~d~~~~l~N~vt~g~~~~~---s~~~y~~il~~i~~~~l~~e~~~D~d~~ 746 (1010)
T KOG1991|consen 678 PIMW--GLLELILEVFQD------DGIDYFTDMMPALHNYVTYGTPSLL---SNPDYLQILLEIIKKVLTSENGEDSDCE 746 (1010)
T ss_pred HHHH--HHHHHHHHHHhh------hhHHHHHHHHHHHhhheeeCchhhh---ccchHHHHHHHHHHHHHcCCCCchHHHH
Confidence 4443 567888888887 4566778888888887754233211 11112 2333344444 3445566
Q ss_pred HHHHHHhhhhh
Q 001833 832 HAATSLARFSK 842 (1008)
Q Consensus 832 ~Aa~aL~nLs~ 842 (1008)
.|+..+.-+..
T Consensus 747 ~a~kLle~iiL 757 (1010)
T KOG1991|consen 747 SACKLLEVIIL 757 (1010)
T ss_pred HHHHHHHHHHH
Confidence 68888777764
No 209
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=93.87 E-value=10 Score=47.01 Aligned_cols=238 Identities=16% Similarity=0.180 Sum_probs=126.9
Q ss_pred HhhcCcHHHHHHHhccC-----CHHHHHHHHHHHHHhhCCCchhHHHHhcCChHHHHHHhccc----C-CCCcchHHHHH
Q 001833 539 LLEGNVLGPLLHLVSRG-----DIQMKKVAVKALRNLSSVPQNGLQMIKEGAVGPLVDLLLHH----S-SSSSSLREETA 608 (1008)
Q Consensus 539 i~~~g~i~~Lv~lL~~~-----~~~~~~~A~~aL~~L~~~~~~~~~i~~~G~v~~Ll~ll~~~----~-~~~~~~~~~a~ 608 (1008)
+.+.|++..++.++.+- ....-...+..|..+|.-+.||..+++.|+++.|++.+... . ...+.+.+..+
T Consensus 113 ~~~~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~Kv~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~LL 192 (802)
T PF13764_consen 113 LAECGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCKVKVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQLL 192 (802)
T ss_pred hhcCCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHhhHHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHHH
Confidence 44589999999888753 22344456667777777899999999999999999888531 1 11134555555
Q ss_pred HHHHHHhccccccccCCcccccccchhHHHHHHHhhccCChHHHHHHHHHHHHhccCCChhhHHHHhhhcCChHHHHHhh
Q 001833 609 TAIMHLAVSTMYQESSQTPVTLLESDKEIFMLFSLINLTGPNVQQRILQTFNALCRSPSAGNIKTTLTQCSAIPVLVQLC 688 (1008)
Q Consensus 609 ~~L~nLa~~~~~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~aL~~L~~~~~~~~~~~~i~e~~~i~~Lv~ll 688 (1008)
.++..+......... .. ..+.+.. .... -....-+..|++.+
T Consensus 193 ~IiE~ll~ea~~~~~--------------------------~~-------~~~~~~~-~~~~----~~~~~~v~~lL~~l 234 (802)
T PF13764_consen 193 EIIESLLSEANSSSS--------------------------SE-------SKSSSSL-SGSE----EQDKEQVEMLLERL 234 (802)
T ss_pred HHHHHHHHHHhhhhh--------------------------hh-------ccccccc-cccc----cccHHHHHHHHHHh
Confidence 555555432211000 00 0000000 0000 00001144444444
Q ss_pred ccC----ChhHHHHHHHHHHHhccCCChhHHHhhhcccchHHHHHH--hcCC--CCH-HHHHHHHHHHhcCCC---Chhh
Q 001833 689 EHD----NENVRANAVKLFCCLVDDGDEAIIREHVGQKCLETLVTI--IQSS--HNE-EEIASAMGILSKLPE---VPQF 756 (1008)
Q Consensus 689 ~~~----~~~v~~~a~~~L~~Ls~~~~~~~~~~~~~~~~i~~Lv~l--L~~~--~~~-~v~~~a~~~L~nL~~---~~~~ 756 (1008)
.+. ++.+....+++|-+|+ .+..+....+++. ....+++ +... .+. -.....+.+..++.. ....
T Consensus 235 ~s~~~r~~~~i~~~l~RiLP~Lt-~G~~e~m~~Lv~~--F~p~l~f~~~D~~~~~~~~~~Le~F~~i~~~I~~~~~G~~L 311 (802)
T PF13764_consen 235 NSPFVRSNPQILQALARILPFLT-YGNEEKMDALVEH--FKPYLDFDKFDEEHSPDEQFKLECFCEIAEGIPNNSNGNRL 311 (802)
T ss_pred cCccccCCHHHHHHHHHHhhHHh-cCCHHHHHHHHHH--HHHhcChhhcccccCchHHHHHHHHHHHHhcCCCCCchHHH
Confidence 433 5777888888888888 6655544443321 1111111 1111 111 122333445555555 3477
Q ss_pred HHHHHhcCCHHHHHHHhhCCCCC--CCchhhH--------HHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHH
Q 001833 757 TQWLLDAGALPIVLNFLKNGRQN--DPNRFQV--------VENAVGALRRFTAPTNLEWQKRAAEAGVIPKLV 819 (1008)
Q Consensus 757 ~~~l~~~g~l~~Lv~lL~~~~~~--~~~~~~v--------~~~a~~aL~~L~~~~~~~~~~~l~~~g~l~~Lv 819 (1008)
++.+++.|++...+++|....+. ...+++. ...++..|.-|+.+ ++..+.. ...+++|.+-
T Consensus 312 K~~Il~~GIv~~a~~YL~~~~P~~~~~~s~eWk~~l~~psLp~iL~lL~GLa~g-h~~tQ~~-~~~~~l~~lH 382 (802)
T PF13764_consen 312 KDKILESGIVQDAIDYLLKHFPSLKNTDSPEWKEFLSRPSLPYILRLLRGLARG-HEPTQLL-IAEQLLPLLH 382 (802)
T ss_pred HHHHHHhhHHHHHHHHHHHhCcccccCCCHHHHHHhcCCcHHHHHHHHHHHHhc-CHHHHHH-HHhhHHHHHH
Confidence 88999999999888888763221 1112222 34577778888886 5555544 4455665443
No 210
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=93.80 E-value=9.2 Score=42.47 Aligned_cols=221 Identities=13% Similarity=0.178 Sum_probs=150.0
Q ss_pred cchHHHHHHHhcCCChHHHHHHHHHHHhhcCCc-cc----HHHHHhcCcHHHHHHHHhcC--CHHHHHHHHHHHHHHcCC
Q 001833 460 QGCILLLVTMASSDDNQASRDAQELLENLSFSD-DN----VVQMAKANYFKHLLQRLSAG--PESVKMRMATTLAEMELT 532 (1008)
Q Consensus 460 ~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~~-~n----~~~i~~~g~v~~Lv~~L~~~--~~~~~~~aa~~L~~Ls~~ 532 (1008)
.+.+..|+..|..-+-+++++++.+..++-... ++ ......... +.++..|-.| ++++.-.+..+|......
T Consensus 75 ~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~-peil~~L~~gy~~~dial~~g~mlRec~k~ 153 (335)
T PF08569_consen 75 SDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHR-PEILDILLRGYENPDIALNCGDMLRECIKH 153 (335)
T ss_dssp HTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT---THHHHHHHHGGGSTTTHHHHHHHHHHHTTS
T ss_pred hCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCC-HHHHHHHHHHhcCccccchHHHHHHHHHhh
Confidence 588888999898889999999999998886432 11 111222221 2222222222 567777888888888888
Q ss_pred hhhHHHHhhcCcHHHHHHHhccCCHHHHHHHHHHHHHhh-CCCchhHHHHhcC---ChHHHHHHhcccCCCCcchHHHHH
Q 001833 533 DHHKASLLEGNVLGPLLHLVSRGDIQMKKVAVKALRNLS-SVPQNGLQMIKEG---AVGPLVDLLLHHSSSSSSLREETA 608 (1008)
Q Consensus 533 ~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~~L~-~~~~~~~~i~~~G---~v~~Ll~ll~~~~~~~~~~~~~a~ 608 (1008)
+.....+.....+..+.+.+..++-.+...|...+..+- .++.-....+... .+.....++.+++ =-.+.+++
T Consensus 154 e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~N---Yvtkrqsl 230 (335)
T PF08569_consen 154 ESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSN---YVTKRQSL 230 (335)
T ss_dssp HHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SS---HHHHHHHH
T ss_pred HHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCC---eEeehhhH
Confidence 877777888888889999999999999999999999876 4554555555443 3566777787655 45789999
Q ss_pred HHHHHHhccccccccCCcccccccchhHHHHHHHhhccCChHHHHHHHHHHHHhccCCC-hhhHHHHhhhcCChHHHHHh
Q 001833 609 TAIMHLAVSTMYQESSQTPVTLLESDKEIFMLFSLINLTGPNVQQRILQTFNALCRSPS-AGNIKTTLTQCSAIPVLVQL 687 (1008)
Q Consensus 609 ~~L~nLa~~~~~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~aL~~L~~~~~-~~~~~~~i~e~~~i~~Lv~l 687 (1008)
..|+.|-.+..... .....+.+...+..++.+|++.+..+|-.|..++--...+|. +++++..+..+ =..|+.+
T Consensus 231 kLL~ellldr~n~~---vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVANp~K~~~I~~iL~~N--r~kLl~f 305 (335)
T PF08569_consen 231 KLLGELLLDRSNFN---VMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVANPNKPPPIVDILIKN--REKLLRF 305 (335)
T ss_dssp HHHHHHHHSGGGHH---HHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-SS-BHHHHHHHHHT--HHHHHHH
T ss_pred HHHHHHHHchhHHH---HHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhCCCCChHHHHHHHHH--HHHHHHH
Confidence 99999987654432 123467788899999999999999999999998888777654 45555555443 3444444
Q ss_pred hc
Q 001833 688 CE 689 (1008)
Q Consensus 688 l~ 689 (1008)
+.
T Consensus 306 l~ 307 (335)
T PF08569_consen 306 LK 307 (335)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 211
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.78 E-value=0.049 Score=54.68 Aligned_cols=53 Identities=25% Similarity=0.461 Sum_probs=45.6
Q ss_pred ccccccccccccCCc----eeccCcccccHHHHHHHHhcCCCCCCCcCccCCCCCCcc
Q 001833 264 QSFYCPITRDVMVDP----VETSSGQTFERSAIEKWFSDGNNLCPLTMTVLDTSILRP 317 (1008)
Q Consensus 264 ~~~~cpi~~~~m~dp----v~~~~g~t~~r~~i~~w~~~~~~~cp~~~~~l~~~~l~p 317 (1008)
+.|+||+|++.+.+- |+-+||+.++..|.++.+. +...||+|+.++...++++
T Consensus 220 ~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir-~D~v~pv~d~plkdrdiI~ 276 (303)
T KOG3039|consen 220 KRYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIR-KDMVDPVTDKPLKDRDIIG 276 (303)
T ss_pred cceecccchhhhcCccceEEeccCCcEeeHHHHHHhcc-ccccccCCCCcCcccceEe
Confidence 679999999999874 3337999999999999884 4668999999999998876
No 212
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.76 E-value=0.031 Score=66.75 Aligned_cols=46 Identities=28% Similarity=0.592 Sum_probs=41.3
Q ss_pred ccccccccccccCC-----ceeccCcccccHHHHHHHHhcCCCCCCCcCccC
Q 001833 264 QSFYCPITRDVMVD-----PVETSSGQTFERSAIEKWFSDGNNLCPLTMTVL 310 (1008)
Q Consensus 264 ~~~~cpi~~~~m~d-----pv~~~~g~t~~r~~i~~w~~~~~~~cp~~~~~l 310 (1008)
.+-.|+||.|.|.. |-.++|||.|...|+.+|+++ ..+||.|+..+
T Consensus 290 ~~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~er-~qtCP~CR~~~ 340 (543)
T KOG0802|consen 290 SDELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFER-QQTCPTCRTVL 340 (543)
T ss_pred cCCeeeeechhhccccccccceeecccchHHHHHHHHHHH-hCcCCcchhhh
Confidence 46789999999999 888999999999999999988 66899998844
No 213
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.45 E-value=24 Score=44.61 Aligned_cols=225 Identities=14% Similarity=0.107 Sum_probs=119.2
Q ss_pred ccCChhHHHHHHHHHHHhccCCChhHHHhhhcccchHHHHHHhcCCCCHHHHHHHHHHHhcCCC-Ch-hhHHHHHhcCCH
Q 001833 689 EHDNENVRANAVKLFCCLVDDGDEAIIREHVGQKCLETLVTIIQSSHNEEEIASAMGILSKLPE-VP-QFTQWLLDAGAL 766 (1008)
Q Consensus 689 ~~~~~~v~~~a~~~L~~Ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~v~~~a~~~L~nL~~-~~-~~~~~l~~~g~l 766 (1008)
++.+..+|..+-++|..++...+......-.-......|.+-+++. ....+...+.+|..|-. .+ +... ++.. .+
T Consensus 664 ~~~~~~vQkK~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~qs~-~~~~~~~rl~~L~~L~~~~~~e~~~-~i~k-~I 740 (1176)
T KOG1248|consen 664 NSSSTKVQKKAYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQSS-SSPAQASRLKCLKRLLKLLSAEHCD-LIPK-LI 740 (1176)
T ss_pred ccccHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhcc-chHHHHHHHHHHHHHHHhccHHHHH-HHHH-HH
Confidence 3447889999999999988442221111111112333344444442 33567777777777655 22 2222 2222 23
Q ss_pred HHHHHHhhCCCCCCCchhhHHHHHHHHHHHhcCC-------CCHHHHHHHHHcCChHHHHHHhhcCChHHHHHHHHHHhh
Q 001833 767 PIVLNFLKNGRQNDPNRFQVVENAVGALRRFTAP-------TNLEWQKRAAEAGVIPKLVQLLEYGTTLTKEHAATSLAR 839 (1008)
Q Consensus 767 ~~Lv~lL~~~~~~~~~~~~v~~~a~~aL~~L~~~-------~~~~~~~~l~~~g~l~~Lv~lL~~~~~~v~~~Aa~aL~n 839 (1008)
+-++-.+++ .+...++.+..+|..++.. +++ ....-..+++.+...+-.....+......++..
T Consensus 741 ~EvIL~~Ke------~n~~aR~~Af~lL~~i~~i~~~~d~g~e~---~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~ 811 (1176)
T KOG1248|consen 741 PEVILSLKE------VNVKARRNAFALLVFIGAIQSSLDDGNEP---ASAILNEFLSIISAGLVGDSTRVVASDIVAITH 811 (1176)
T ss_pred HHHHHhccc------ccHHHHhhHHHHHHHHHHHHhhhcccccc---hHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHH
Confidence 333333355 6777888888888887721 111 011112233333333222222222222445555
Q ss_pred hhhcCCCCCCCCCCCCcccccCCCCCCcccccCcccCcccchhHhhccchHHHHHhhcCCChhhhHHHHHHHHhhhcccc
Q 001833 840 FSKNSLGLSRPIPKRKGFWCFSPPPEIGCQVHGGLCGIESSFCLLEANAVRPLVRVLEDPDHGACEASLDALVTLIEGER 919 (1008)
Q Consensus 840 Ls~~~~~l~~~~~~~~g~~~~~~~~~~~c~vh~~~c~~~~~~~l~~~g~i~~Lv~lL~~~d~~v~~~al~aL~~L~~~~~ 919 (1008)
+.....++.. . -.-.+.+.-++-.|.+..++++.+|+..+..++..
T Consensus 812 il~e~~~~ld---------------------------~-----~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~-- 857 (1176)
T KOG1248|consen 812 ILQEFKNILD---------------------------D-----ETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYK-- 857 (1176)
T ss_pred HHHHHhcccc---------------------------H-----HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHc--
Confidence 5433221100 0 01123455566677889999999999999998811
Q ss_pred cchhhHHHHhcCchHHHHHHhcCCChHHHHHHHHHHHHHh
Q 001833 920 LQNGSKVLEDANAIDRMVRFLSSPSPKLQEKALDSVERIF 959 (1008)
Q Consensus 920 ~~~~~~~i~~~~~i~~l~~ll~~~~~~l~~~a~~~L~~l~ 959 (1008)
+......-.....++.+..+++..+..++.+...+++++.
T Consensus 858 ~pe~~l~~~~~~LL~sll~ls~d~k~~~r~Kvr~LlekLi 897 (1176)
T KOG1248|consen 858 FPEECLSPHLEELLPSLLALSHDHKIKVRKKVRLLLEKLI 897 (1176)
T ss_pred CCHHHHhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 1122222222235777888888878889999999988874
No 214
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=93.30 E-value=1.2 Score=53.71 Aligned_cols=153 Identities=15% Similarity=0.216 Sum_probs=98.9
Q ss_pred hHHHHHHHhhccCChHHHHHHHHHHHHhccCCChhhHHHHhhhcCChHHHHHhhccCChhHHHHHHHHHHHhccCCChhH
Q 001833 635 KEIFMLFSLINLTGPNVQQRILQTFNALCRSPSAGNIKTTLTQCSAIPVLVQLCEHDNENVRANAVKLFCCLVDDGDEAI 714 (1008)
Q Consensus 635 ~~i~~L~~ll~~~~~~v~~~al~aL~~L~~~~~~~~~~~~i~e~~~i~~Lv~ll~~~~~~v~~~a~~~L~~Ls~~~~~~~ 714 (1008)
..++.+++.........+.+-+.+|.++..+-....+.+.+. ...|.|++-+.-+|..+|..+..++..+. ...+..
T Consensus 867 ~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~~vllp~~~--~LlPLLLq~Ls~~D~~v~vstl~~i~~~l-~~~~tL 943 (1030)
T KOG1967|consen 867 DIVPILVSKFETAPGSQKHNYLEALSHVLTNVPKQVLLPQFP--MLLPLLLQALSMPDVIVRVSTLRTIPMLL-TESETL 943 (1030)
T ss_pred hhHHHHHHHhccCCccchhHHHHHHHHHHhcCCHHhhccchh--hHHHHHHHhcCCCccchhhhHhhhhhHHH-Hhcccc
Confidence 344555555554444455555555655554311111111111 25788888888999999999999888776 222222
Q ss_pred HHhhhcccchHHHHHHhcCCCC--HHHHHHHHHHHhcCCC-ChhhHHHHHhcCCHHHHHHHhhCCCCCCCchhhHHHHHH
Q 001833 715 IREHVGQKCLETLVTIIQSSHN--EEEIASAMGILSKLPE-VPQFTQWLLDAGALPIVLNFLKNGRQNDPNRFQVVENAV 791 (1008)
Q Consensus 715 ~~~~~~~~~i~~Lv~lL~~~~~--~~v~~~a~~~L~nL~~-~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~v~~~a~ 791 (1008)
...+. ...++.+..+=.++++ ..++..|+.+|..|+. -|...-...+..++..|...|.+ ++.-+|+.|+
T Consensus 944 ~t~~~-~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdD------kKRlVR~eAv 1016 (1030)
T KOG1967|consen 944 QTEHL-STLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDD------KKRLVRKEAV 1016 (1030)
T ss_pred chHHH-hHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCc------HHHHHHHHHH
Confidence 22222 2467777776666543 6789999999999988 66555556677788999999999 6778899988
Q ss_pred HHHHHh
Q 001833 792 GALRRF 797 (1008)
Q Consensus 792 ~aL~~L 797 (1008)
.+=.++
T Consensus 1017 ~tR~~W 1022 (1030)
T KOG1967|consen 1017 DTRQNW 1022 (1030)
T ss_pred HHhhhh
Confidence 764443
No 215
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.09 E-value=0.05 Score=56.65 Aligned_cols=51 Identities=18% Similarity=0.202 Sum_probs=44.9
Q ss_pred cccccccccccCCceeccCcccccHHHHHHHHhcCCCCCCCcCccCCCCCC
Q 001833 265 SFYCPITRDVMVDPVETSSGQTFERSAIEKWFSDGNNLCPLTMTVLDTSIL 315 (1008)
Q Consensus 265 ~~~cpi~~~~m~dpv~~~~g~t~~r~~i~~w~~~~~~~cp~~~~~l~~~~l 315 (1008)
.-.||||+.-|..||.+.|+|.||--||+--...+..+||+|+.++++..+
T Consensus 7 ~~eC~IC~nt~n~Pv~l~C~HkFCyiCiKGsy~ndk~~CavCR~pids~i~ 57 (324)
T KOG0824|consen 7 KKECLICYNTGNCPVNLYCFHKFCYICIKGSYKNDKKTCAVCRFPIDSTID 57 (324)
T ss_pred CCcceeeeccCCcCccccccchhhhhhhcchhhcCCCCCceecCCCCcchh
Confidence 457999999999999999999999999998666677889999999986543
No 216
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.05 E-value=32 Score=43.51 Aligned_cols=218 Identities=15% Similarity=0.177 Sum_probs=124.9
Q ss_pred CCChHHHHHHHHHHHhhcCCcccHHHHHh--cCcHHHHHHHHhcCCHHHHHHHHHHHHHHcC--ChhhHHHHhhcCcHHH
Q 001833 472 SDDNQASRDAQELLENLSFSDDNVVQMAK--ANYFKHLLQRLSAGPESVKMRMATTLAEMEL--TDHHKASLLEGNVLGP 547 (1008)
Q Consensus 472 ~~~~~~~~~a~~aL~~Ls~~~~n~~~i~~--~g~v~~Lv~~L~~~~~~~~~~aa~~L~~Ls~--~~~~k~~i~~~g~i~~ 547 (1008)
+.++.++..+-..|..++..+........ ..+...|.+-++..+...+...+.+|..|-. ..+....+ ...|+-
T Consensus 665 ~~~~~vQkK~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i--~k~I~E 742 (1176)
T KOG1248|consen 665 SSSTKVQKKAYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLI--PKLIPE 742 (1176)
T ss_pred cccHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHH--HHHHHH
Confidence 55888999999999999876332221111 2233444444555455556555666655522 12333222 234444
Q ss_pred HHHHhccCCHHHHHHHHHHHHHhhCCCchhHHHHhcC------ChHHHHHHhcccCCCCcchHHHH--HHHHHHHhcccc
Q 001833 548 LLHLVSRGDIQMKKVAVKALRNLSSVPQNGLQMIKEG------AVGPLVDLLLHHSSSSSSLREET--ATAIMHLAVSTM 619 (1008)
Q Consensus 548 Lv~lL~~~~~~~~~~A~~aL~~L~~~~~~~~~i~~~G------~v~~Ll~ll~~~~~~~~~~~~~a--~~~L~nLa~~~~ 619 (1008)
++-.+...+...++.|..+|..++. .....+.| .+..++..+..+.-+ ......+ .-++..+.....
T Consensus 743 vIL~~Ke~n~~aR~~Af~lL~~i~~----i~~~~d~g~e~~~~~lnefl~~Isagl~g-d~~~~~as~Ivai~~il~e~~ 817 (1176)
T KOG1248|consen 743 VILSLKEVNVKARRNAFALLVFIGA----IQSSLDDGNEPASAILNEFLSIISAGLVG-DSTRVVASDIVAITHILQEFK 817 (1176)
T ss_pred HHHhcccccHHHHhhHHHHHHHHHH----HHhhhcccccchHHHHHHHHHHHHhhhcc-cHHHHHHHHHHHHHHHHHHHh
Confidence 4444577788999999999999882 11111222 455666666554222 1112222 233333333111
Q ss_pred ccccCCcccccccchh----HHHHHHHhhccCChHHHHHHHHHHHHhccCCChhhHHHHhhhcCChHHHHHhhccCChhH
Q 001833 620 YQESSQTPVTLLESDK----EIFMLFSLINLTGPNVQQRILQTFNALCRSPSAGNIKTTLTQCSAIPVLVQLCEHDNENV 695 (1008)
Q Consensus 620 ~~~~~~~~~~~l~~~~----~i~~L~~ll~~~~~~v~~~al~aL~~L~~~~~~~~~~~~i~e~~~i~~Lv~ll~~~~~~v 695 (1008)
. +.+.+ .+..+...|.+.++++...|+..+..++.. .++..-.-.....++.++.+.+.....+
T Consensus 818 ~----------~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~--~pe~~l~~~~~~LL~sll~ls~d~k~~~ 885 (1176)
T KOG1248|consen 818 N----------ILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYK--FPEECLSPHLEELLPSLLALSHDHKIKV 885 (1176)
T ss_pred c----------cccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHc--CCHHHHhhhHHHHHHHHHHHHHhhhHHH
Confidence 1 11223 344455556688999999999999998874 2222222222236888888888888899
Q ss_pred HHHHHHHHHHhcc
Q 001833 696 RANAVKLFCCLVD 708 (1008)
Q Consensus 696 ~~~a~~~L~~Ls~ 708 (1008)
+...-.+|-.|.+
T Consensus 886 r~Kvr~LlekLir 898 (1176)
T KOG1248|consen 886 RKKVRLLLEKLIR 898 (1176)
T ss_pred HHHHHHHHHHHHH
Confidence 9888888888873
No 217
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=93.04 E-value=0.72 Score=48.53 Aligned_cols=83 Identities=19% Similarity=0.259 Sum_probs=73.4
Q ss_pred hHHHHHHHHHHHHHHhhchhhhhhHhhcCchHHHHHHHc-CCCHHHHHHHHHHHHHhccCChhhHHHhhccCCcHHHHHH
Q 001833 349 VEEVLHCLEQLQDLCQQRDQHREWVILENYIPKLIYLLG-SKNRDVRNRALIILHILVKDSNDTKERLANGDDAVESIVR 427 (1008)
Q Consensus 349 ~~~~~~al~~L~~l~~~~~~~r~~i~~~g~i~~L~~lL~-s~~~~~~~~Al~~L~~Ls~~~~~~k~~i~~~~g~i~~Lv~ 427 (1008)
+.....|++.|+.+|--++..|..+.....+..++++|. +..+.++..++.+|..+-.+++.|.+.+.+ .+|+..+++
T Consensus 105 ~~li~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~-~~Gl~~v~~ 183 (257)
T PF08045_consen 105 DSLIALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEE-LNGLSTVCS 183 (257)
T ss_pred hHHHHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHH-hCCHHHHHH
Confidence 345667889999999999999999999999999999994 456889999999888888888899999999 899999999
Q ss_pred HhccC
Q 001833 428 SLGRR 432 (1008)
Q Consensus 428 ~L~~~ 432 (1008)
++++.
T Consensus 184 llk~~ 188 (257)
T PF08045_consen 184 LLKSK 188 (257)
T ss_pred HHccc
Confidence 99763
No 218
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=92.96 E-value=9.1 Score=47.36 Aligned_cols=70 Identities=16% Similarity=0.166 Sum_probs=52.1
Q ss_pred cchHHHHHHHhcC-----CChHHHHHHHHHHHhhcCCcccHHHHHhcCcHHHHHHHHh----cCC----HHHHHHHHHHH
Q 001833 460 QGCILLLVTMASS-----DDNQASRDAQELLENLSFSDDNVVQMAKANYFKHLLQRLS----AGP----ESVKMRMATTL 526 (1008)
Q Consensus 460 ~g~i~~Lv~lL~~-----~~~~~~~~a~~aL~~Ls~~~~n~~~i~~~g~v~~Lv~~L~----~~~----~~~~~~aa~~L 526 (1008)
.|++..|+.++.+ .........+..|...+.-+.|+..+++.|+++.|+..|. .+. +++-+..+.++
T Consensus 116 ~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~Kv~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~LL~Ii 195 (802)
T PF13764_consen 116 CGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCKVKVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQLLEII 195 (802)
T ss_pred CCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHhhHHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHHHHHH
Confidence 7888888888873 2345566667777777888999999999999999998874 333 45666666666
Q ss_pred HHH
Q 001833 527 AEM 529 (1008)
Q Consensus 527 ~~L 529 (1008)
..+
T Consensus 196 E~l 198 (802)
T PF13764_consen 196 ESL 198 (802)
T ss_pred HHH
Confidence 555
No 219
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=92.91 E-value=0.85 Score=46.15 Aligned_cols=120 Identities=18% Similarity=0.171 Sum_probs=88.4
Q ss_pred hHHHHHHHHHHHhhcCCcccHHHHHh----------------cCcHHHHHHHHhcC------CHHHHHHHHHHHHHHcCC
Q 001833 475 NQASRDAQELLENLSFSDDNVVQMAK----------------ANYFKHLLQRLSAG------PESVKMRMATTLAEMELT 532 (1008)
Q Consensus 475 ~~~~~~a~~aL~~Ls~~~~n~~~i~~----------------~g~v~~Lv~~L~~~------~~~~~~~aa~~L~~Ls~~ 532 (1008)
......++..|.||+..+..+..+.. ..++..|+..+..| ..+-....+.+|.|++..
T Consensus 9 ~~~adl~~MLLsNlT~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~NlS~~ 88 (192)
T PF04063_consen 9 SPLADLACMLLSNLTRSDSGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLANLSQL 88 (192)
T ss_pred cchHHHHHHHHHHhccchHHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHhcCC
Confidence 34455677788888877766554432 23677788877662 234557789999999999
Q ss_pred hhhHHHHhhcC--c--HHHHHHHhccCCHHHHHHHHHHHHHhhCCCchhHHHHh---cCChHHHHHHhc
Q 001833 533 DHHKASLLEGN--V--LGPLLHLVSRGDIQMKKVAVKALRNLSSVPQNGLQMIK---EGAVGPLVDLLL 594 (1008)
Q Consensus 533 ~~~k~~i~~~g--~--i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~~~~~~~i~~---~G~v~~Ll~ll~ 594 (1008)
+++|..+.+.. . +..|+..+.+.+..-|..++++|.|+|-..+....+.. .+++|.|+--+.
T Consensus 89 ~~gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNccFd~~~H~~LL~~~~~~iLp~LLlPLa 157 (192)
T PF04063_consen 89 PEGRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCCFDTDSHEWLLSDDEVDILPYLLLPLA 157 (192)
T ss_pred HHHHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhhccHhHHHHhcCchhhhhHHHHHhhcc
Confidence 99999887643 4 67788888888888889999999999987777777765 356777776665
No 220
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=92.62 E-value=8 Score=45.96 Aligned_cols=265 Identities=14% Similarity=0.089 Sum_probs=141.4
Q ss_pred cCcHHHHHHHHhcCC-HHHHHHHHHHHHHHcCChhhHHHHhhcCcHHHHHHHhccCCHHHHHHHHHHHHHhhCCCchhHH
Q 001833 501 ANYFKHLLQRLSAGP-ESVKMRMATTLAEMELTDHHKASLLEGNVLGPLLHLVSRGDIQMKKVAVKALRNLSSVPQNGLQ 579 (1008)
Q Consensus 501 ~g~v~~Lv~~L~~~~-~~~~~~aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~~~~~~~ 579 (1008)
.|..+.|...|++.+ +.++.-++-.|+-.+....+. .....+-.+|...+...-+.|.-+.+-+--...+.+
T Consensus 412 ~~~~~yL~~~Lk~~~~e~v~hG~cLGlGLa~mGSa~~------eiYe~lKevLy~D~AvsGEAAgi~MGl~mlGt~~~e- 484 (929)
T KOG2062|consen 412 RGITDYLLQQLKTAENEVVRHGACLGLGLAGMGSANE------EIYEKLKEVLYNDSAVSGEAAGIAMGLLMLGTANQE- 484 (929)
T ss_pred ccHHHHHHHHHHhccchhhhhhhhhhccchhcccccH------HHHHHHHHHHhccchhhhhHHHHhhhhHhhCcCcHH-
Confidence 345677777777654 455655655555443222221 123445555665555555655555544432222221
Q ss_pred HHhcCChHHHHHHhcccCCCCcchHHHHHHHHHHHhccccccccCCcccccccchhHHHHHHHhhccCChHHHHHHHHHH
Q 001833 580 MIKEGAVGPLVDLLLHHSSSSSSLREETATAIMHLAVSTMYQESSQTPVTLLESDKEIFMLFSLINLTGPNVQQRILQTF 659 (1008)
Q Consensus 580 i~~~G~v~~Ll~ll~~~~~~~~~~~~~a~~~L~nLa~~~~~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~aL 659 (1008)
++.-++..-..... ..+++...--++-... -..+++=+.+-.++...+|-+|..-+.++
T Consensus 485 -----aiedm~~Ya~ETQH--eki~RGl~vGiaL~~y--------------grqe~Ad~lI~el~~dkdpilR~~Gm~t~ 543 (929)
T KOG2062|consen 485 -----AIEDMLTYAQETQH--EKIIRGLAVGIALVVY--------------GRQEDADPLIKELLRDKDPILRYGGMYTL 543 (929)
T ss_pred -----HHHHHHHHhhhhhH--HHHHHHHHHhHHHHHh--------------hhhhhhHHHHHHHhcCCchhhhhhhHHHH
Confidence 12223333332211 1112111111111111 11233444555566677888887644433
Q ss_pred HH-hccCCChhhHHHHhhhcCChHHHHHh-hccCChhHHHHHHHHHHHhccCCChhHHHhhhcccchHHHHHHhcCCCCH
Q 001833 660 NA-LCRSPSAGNIKTTLTQCSAIPVLVQL-CEHDNENVRANAVKLFCCLVDDGDEAIIREHVGQKCLETLVTIIQSSHNE 737 (1008)
Q Consensus 660 ~~-L~~~~~~~~~~~~i~e~~~i~~Lv~l-l~~~~~~v~~~a~~~L~~Ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~ 737 (1008)
.- -+... ..+++..|+.. ..+.++++|++|..+|..+... +....+..|++|..+.++
T Consensus 544 alAy~GTg----------nnkair~lLh~aVsD~nDDVrRaAVialGFVl~~----------dp~~~~s~V~lLses~N~ 603 (929)
T KOG2062|consen 544 ALAYVGTG----------NNKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFR----------DPEQLPSTVSLLSESYNP 603 (929)
T ss_pred HHHHhccC----------chhhHHHhhcccccccchHHHHHHHHHheeeEec----------ChhhchHHHHHHhhhcCh
Confidence 22 22211 12456677776 4566899999999999888722 225678889999998899
Q ss_pred HHHHHHHHHHhcCCCChhhHHHHHhcCCHHHHHHHhhCCCCCCCchhhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHH
Q 001833 738 EEIASAMGILSKLPEVPQFTQWLLDAGALPIVLNFLKNGRQNDPNRFQVVENAVGALRRFTAPTNLEWQKRAAEAGVIPK 817 (1008)
Q Consensus 738 ~v~~~a~~~L~nL~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~v~~~a~~aL~~L~~~~~~~~~~~l~~~g~l~~ 817 (1008)
.++..++.+|+--+.......+ +..|-.+..+ ...-+|..|+-+++-+..-.++.....+ .++...
T Consensus 604 HVRyGaA~ALGIaCAGtG~~eA------i~lLepl~~D------~~~fVRQgAlIa~amIm~Q~t~~~~pkv--~~frk~ 669 (929)
T KOG2062|consen 604 HVRYGAAMALGIACAGTGLKEA------INLLEPLTSD------PVDFVRQGALIALAMIMIQQTEQLCPKV--NGFRKQ 669 (929)
T ss_pred hhhhhHHHHHhhhhcCCCcHHH------HHHHhhhhcC------hHHHHHHHHHHHHHHHHHhcccccCchH--HHHHHH
Confidence 9999999999988764433332 2223333334 5667888888887766532122221111 244455
Q ss_pred HHHHhhcCCh
Q 001833 818 LVQLLEYGTT 827 (1008)
Q Consensus 818 Lv~lL~~~~~ 827 (1008)
+.+.+.+.+.
T Consensus 670 l~kvI~dKhE 679 (929)
T KOG2062|consen 670 LEKVINDKHE 679 (929)
T ss_pred HHHHhhhhhh
Confidence 6666665544
No 221
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=92.40 E-value=0.16 Score=34.50 Aligned_cols=29 Identities=28% Similarity=0.432 Sum_probs=25.6
Q ss_pred ChHHHHHHhhcCChHHHHHHHHHHhhhhh
Q 001833 814 VIPKLVQLLEYGTTLTKEHAATSLARFSK 842 (1008)
Q Consensus 814 ~l~~Lv~lL~~~~~~v~~~Aa~aL~nLs~ 842 (1008)
++|.+++++.++++.||..|+++|++++.
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 37899999999999999999999999873
No 222
>KOG4367 consensus Predicted Zn-finger protein [Function unknown]
Probab=92.22 E-value=0.054 Score=58.49 Aligned_cols=33 Identities=9% Similarity=0.361 Sum_probs=30.2
Q ss_pred ccccccccccccCCceeccCcccccHHHHHHHH
Q 001833 264 QSFYCPITRDVMVDPVETSSGQTFERSAIEKWF 296 (1008)
Q Consensus 264 ~~~~cpi~~~~m~dpv~~~~g~t~~r~~i~~w~ 296 (1008)
+++.||||...++||+|++|||+.||.|-..-+
T Consensus 3 eelkc~vc~~f~~epiil~c~h~lc~~ca~~~~ 35 (699)
T KOG4367|consen 3 EELKCPVCGSFYREPIILPCSHNLCQACARNIL 35 (699)
T ss_pred ccccCceehhhccCceEeecccHHHHHHHHhhc
Confidence 689999999999999999999999999977544
No 223
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=92.21 E-value=0.096 Score=55.24 Aligned_cols=50 Identities=22% Similarity=0.331 Sum_probs=43.7
Q ss_pred CCccccccccccccCCceecc-CcccccHHHHHHHHhcCCCCCCCcCccCCC
Q 001833 262 PLQSFYCPITRDVMVDPVETS-SGQTFERSAIEKWFSDGNNLCPLTMTVLDT 312 (1008)
Q Consensus 262 ~~~~~~cpi~~~~m~dpv~~~-~g~t~~r~~i~~w~~~~~~~cp~~~~~l~~ 312 (1008)
||+.=.||+|+.=-.+|.++. ||..||-.||-++.. .+..||+|+-|..-
T Consensus 297 ~~~~~~CpvClk~r~Nptvl~vSGyVfCY~Ci~~Yv~-~~~~CPVT~~p~~v 347 (357)
T KOG0826|consen 297 PPDREVCPVCLKKRQNPTVLEVSGYVFCYPCIFSYVV-NYGHCPVTGYPASV 347 (357)
T ss_pred CCccccChhHHhccCCCceEEecceEEeHHHHHHHHH-hcCCCCccCCcchH
Confidence 567889999999999998886 599999999999997 57789999988753
No 224
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=92.19 E-value=5.6 Score=39.97 Aligned_cols=91 Identities=19% Similarity=0.289 Sum_probs=71.4
Q ss_pred CHHHHHHHHHHHHHhhC-CCchhHHHHhcCChHHHHHHhcccCCCCcchHHHHHHHHHHHhccccccccCCcccccccch
Q 001833 556 DIQMKKVAVKALRNLSS-VPQNGLQMIKEGAVGPLVDLLLHHSSSSSSLREETATAIMHLAVSTMYQESSQTPVTLLESD 634 (1008)
Q Consensus 556 ~~~~~~~A~~aL~~L~~-~~~~~~~i~~~G~v~~Ll~ll~~~~~~~~~~~~~a~~~L~nLa~~~~~~~~~~~~~~~l~~~ 634 (1008)
+|.+|.+++.+++.||. .+.. + ...+|.+...|.+.+ +.++..|+.+|.+|...+. +.-.
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~~----v-e~~~~~l~~~L~D~~---~~VR~~al~~Ls~Li~~d~-----------ik~k 61 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPNL----V-EPYLPNLYKCLRDED---PLVRKTALLVLSHLILEDM-----------IKVK 61 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcHH----H-HhHHHHHHHHHCCCC---HHHHHHHHHHHHHHHHcCc-----------eeeh
Confidence 47789999999999995 3322 2 235778888888665 7899999999999987543 3333
Q ss_pred hHH-HHHHHhhccCChHHHHHHHHHHHHhccC
Q 001833 635 KEI-FMLFSLINLTGPNVQQRILQTFNALCRS 665 (1008)
Q Consensus 635 ~~i-~~L~~ll~~~~~~v~~~al~aL~~L~~~ 665 (1008)
|-+ ..++.++..+++.++..|...|..+...
T Consensus 62 ~~l~~~~l~~l~D~~~~Ir~~A~~~~~e~~~~ 93 (178)
T PF12717_consen 62 GQLFSRILKLLVDENPEIRSLARSFFSELLKK 93 (178)
T ss_pred hhhhHHHHHHHcCCCHHHHHHHHHHHHHHHHh
Confidence 444 8888899999999999999999999875
No 225
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=91.98 E-value=0.066 Score=51.78 Aligned_cols=45 Identities=22% Similarity=0.400 Sum_probs=38.4
Q ss_pred ccccccccccCCceeccCcccccHHHHHHHHhcCCCCCCCcCccCC
Q 001833 266 FYCPITRDVMVDPVETSSGQTFERSAIEKWFSDGNNLCPLTMTVLD 311 (1008)
Q Consensus 266 ~~cpi~~~~m~dpv~~~~g~t~~r~~i~~w~~~~~~~cp~~~~~l~ 311 (1008)
|.|-||.+-++.||++.|||.||-.|.-+-+..| ++|-+|+....
T Consensus 197 F~C~iCKkdy~spvvt~CGH~FC~~Cai~~y~kg-~~C~~Cgk~t~ 241 (259)
T COG5152 197 FLCGICKKDYESPVVTECGHSFCSLCAIRKYQKG-DECGVCGKATY 241 (259)
T ss_pred eeehhchhhccchhhhhcchhHHHHHHHHHhccC-Ccceecchhhc
Confidence 9999999999999999999999999987777654 46888876543
No 226
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=91.87 E-value=0.66 Score=41.23 Aligned_cols=70 Identities=13% Similarity=0.155 Sum_probs=52.3
Q ss_pred hcCcHHHHHHHHhcCCHHHHHHHHHHHHHHcCChhhHHHHhhcCcHHHHHHHhccCCHHHHHHHHHHHHHh
Q 001833 500 KANYFKHLLQRLSAGPESVKMRMATTLAEMELTDHHKASLLEGNVLGPLLHLVSRGDIQMKKVAVKALRNL 570 (1008)
Q Consensus 500 ~~g~v~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~~L 570 (1008)
-..++++++..+.+.+..+|..|+.+|++++..-.......-..+...|.+++.+.++.++..| ..|-+|
T Consensus 25 l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d~~Vr~~a-~~Ld~l 94 (97)
T PF12755_consen 25 LDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADPDENVRSAA-ELLDRL 94 (97)
T ss_pred HHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHH-HHHHHH
Confidence 3567899999999999999999999999997544333222234677888899999998887766 444443
No 227
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=91.75 E-value=1.3 Score=53.58 Aligned_cols=260 Identities=16% Similarity=0.146 Sum_probs=137.1
Q ss_pred HHHHHHHHHHHhhCCCchhHHHHhcCChHHHHHHhcccCCCCcchHHHHHHHHHHHhccccccccCCcccccccchhHHH
Q 001833 559 MKKVAVKALRNLSSVPQNGLQMIKEGAVGPLVDLLLHHSSSSSSLREETATAIMHLAVSTMYQESSQTPVTLLESDKEIF 638 (1008)
Q Consensus 559 ~~~~A~~aL~~L~~~~~~~~~i~~~G~v~~Ll~ll~~~~~~~~~~~~~a~~~L~nLa~~~~~~~~~~~~~~~l~~~~~i~ 638 (1008)
...++.+.+.+++..++....+..+-.+...-.--.-++ ...++.|...|.-+...-.-|.. ..+.....
T Consensus 749 ~s~~~~k~~~~~~~~~~~~~~l~~~~~vs~~~v~~y~gs---~dls~~al~~l~Wv~KaLl~R~~-------~~s~~ia~ 818 (1030)
T KOG1967|consen 749 SSTNALKTTANLKLKEEAIRQLFSAKFVSEKKVENYCGS---LDLSEIALTVLAWVTKALLLRNH-------PESSEIAE 818 (1030)
T ss_pred ccccchhhhhhhhcccHHHHHHHHHHhhhhHhHhhccCC---cchhhHHHHHHHHHHHHHHHcCC-------cccchHHH
Confidence 334566666677765554444443322211111001111 34555555555544432222211 12223445
Q ss_pred HHHHhhccCChHHHHHHHHHHHHhccCCChh-------hH----HHHhhhcCChHHHHHhhccCChhHHHHHHHHHHHhc
Q 001833 639 MLFSLINLTGPNVQQRILQTFNALCRSPSAG-------NI----KTTLTQCSAIPVLVQLCEHDNENVRANAVKLFCCLV 707 (1008)
Q Consensus 639 ~L~~ll~~~~~~v~~~al~aL~~L~~~~~~~-------~~----~~~i~e~~~i~~Lv~ll~~~~~~v~~~a~~~L~~Ls 707 (1008)
.++.+|+. |.+-..+..++.-+..+.... .. ++.+- +..+|.|++.....+...+..-..+|.+..
T Consensus 819 klld~Ls~--~~~g~~aa~~fsiim~D~~~~~~r~~~a~~riLykQRfF-~~ivP~l~~~~~t~~~~~K~~yl~~LshVl 895 (1030)
T KOG1967|consen 819 KLLDLLSG--PSTGSPAAKLFSIIMSDSNPLLKRKGHAEPRILYKQRFF-CDIVPILVSKFETAPGSQKHNYLEALSHVL 895 (1030)
T ss_pred HHHHhcCC--ccccchHHHhhHhhhccChHHhhhccccchhHHHHHHHH-HhhHHHHHHHhccCCccchhHHHHHHHHHH
Confidence 55555553 444445555555554432111 11 11111 356899999998777788888888888876
Q ss_pred cCCChhHHHhhhcccchHHHHHHhcCCCCHHHHHHHHHHHhcCCC-ChhhHHHHHhcCCHHHHHHHhhCCCCCCCchhhH
Q 001833 708 DDGDEAIIREHVGQKCLETLVTIIQSSHNEEEIASAMGILSKLPE-VPQFTQWLLDAGALPIVLNFLKNGRQNDPNRFQV 786 (1008)
Q Consensus 708 ~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~v~~~a~~~L~nL~~-~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~v 786 (1008)
.+-+...+. ..-....|.|++.|.- ++..++..++.++.-+.. .+.... -.-...+|.++.+=.+. ++....+
T Consensus 896 ~~vP~~vll-p~~~~LlPLLLq~Ls~-~D~~v~vstl~~i~~~l~~~~tL~t-~~~~Tlvp~lLsls~~~---~n~~~~V 969 (1030)
T KOG1967|consen 896 TNVPKQVLL-PQFPMLLPLLLQALSM-PDVIVRVSTLRTIPMLLTESETLQT-EHLSTLVPYLLSLSSDN---DNNMMVV 969 (1030)
T ss_pred hcCCHHhhc-cchhhHHHHHHHhcCC-CccchhhhHhhhhhHHHHhccccch-HHHhHHHHHHHhcCCCC---CcchhHH
Confidence 333321111 1123567888888877 455677788877766544 221111 11123456665555442 1123779
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHHHhhcCChHHHHHHHHHHh
Q 001833 787 VENAVGALRRFTAPTNLEWQKRAAEAGVIPKLVQLLEYGTTLTKEHAATSLA 838 (1008)
Q Consensus 787 ~~~a~~aL~~L~~~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~v~~~Aa~aL~ 838 (1008)
|+.|+.+|..|+........ .-....++..|...|.+..--+|++|+.+=.
T Consensus 970 R~~ALqcL~aL~~~~P~~~l-~~fr~~Vl~al~k~LdDkKRlVR~eAv~tR~ 1020 (1030)
T KOG1967|consen 970 REDALQCLNALTRRLPTKSL-LSFRPLVLRALIKILDDKKRLVRKEAVDTRQ 1020 (1030)
T ss_pred HHHHHHHHHHHhccCCCccc-ccccHHHHHHhhhccCcHHHHHHHHHHHHhh
Confidence 99999999999984111111 1122334566677777776688988887643
No 228
>KOG0883 consensus Cyclophilin type, U box-containing peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=91.36 E-value=0.13 Score=55.23 Aligned_cols=52 Identities=31% Similarity=0.408 Sum_probs=47.8
Q ss_pred cccccccccccCCceeccCcccccHHHHHHHHhcCCCCCCCcCccCCCCCCcc
Q 001833 265 SFYCPITRDVMVDPVETSSGQTFERSAIEKWFSDGNNLCPLTMTVLDTSILRP 317 (1008)
Q Consensus 265 ~~~cpi~~~~m~dpv~~~~g~t~~r~~i~~w~~~~~~~cp~~~~~l~~~~l~p 317 (1008)
.-+|.++...|.|||.+..|..||-..|--|+.. +.+-|.||+++...+|++
T Consensus 40 ~~hC~lt~~Pfe~PvC~~dg~vFd~~~Ivp~lkk-~g~nP~tG~kl~~~dLIk 91 (518)
T KOG0883|consen 40 FNHCSLTMLPFEDPVCTVDGTVFDLTAIVPWLKK-HGTNPITGQKLDGKDLIK 91 (518)
T ss_pred hhhceeccccccCcccccCCcEEeeehhhHHHHH-cCCCCCCCCcccccccee
Confidence 4689999999999999999999999999999965 667899999999999886
No 229
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=91.35 E-value=0.38 Score=44.05 Aligned_cols=72 Identities=10% Similarity=0.140 Sum_probs=61.4
Q ss_pred CHHHHHHHhhCCCCCCCchhhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHHHhhcCChHHHHHHHHHHhhhhh
Q 001833 765 ALPIVLNFLKNGRQNDPNRFQVVENAVGALRRFTAPTNLEWQKRAAEAGVIPKLVQLLEYGTTLTKEHAATSLARFSK 842 (1008)
Q Consensus 765 ~l~~Lv~lL~~~~~~~~~~~~v~~~a~~aL~~L~~~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~v~~~Aa~aL~nLs~ 842 (1008)
.+..|+++|... .++.+..-||.-|+.++.. .|..+..+.+.|+-..+.+++.+++++|+.+|..|+..+..
T Consensus 44 llk~L~~lL~~s-----~d~~~laVac~Dig~~vr~-~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~ 115 (119)
T PF11698_consen 44 LLKKLIKLLDKS-----DDPTTLAVACHDIGEFVRH-YPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLMV 115 (119)
T ss_dssp HHHHHHHHH-SH-----HHHHHHHHHHHHHHHHHHH--GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccC-----CCcceeehhhcchHHHHHH-ChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 578899999552 5778888999999999998 68899999999999999999999999999999999998763
No 230
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=91.29 E-value=9.7 Score=46.01 Aligned_cols=359 Identities=11% Similarity=0.071 Sum_probs=175.4
Q ss_pred HHHHHHHHHHhccCchhhHHhhcccchHHHHHHHhcCCChHHHHHHHHHHHhhcCCcccHHHH------HhcCcHHHHHH
Q 001833 436 RKLAVALLLELSTCNTLRDQIGDVQGCILLLVTMASSDDNQASRDAQELLENLSFSDDNVVQM------AKANYFKHLLQ 509 (1008)
Q Consensus 436 ~~~A~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~~~n~~~i------~~~g~v~~Lv~ 509 (1008)
.-.+...|..|+.+..+...+.. .|+|..|+.+=+- .....-.-.+|+.+....+....+ +-..+|..-+.
T Consensus 370 ~~~~~k~~~~l~~h~kfa~~fv~-~~gi~kll~vpr~--s~~~~g~s~cly~~~~~q~~mervc~~p~~v~~~vv~~~~~ 446 (1516)
T KOG1832|consen 370 LPDVMKLICALAAHRKFAAMFVE-RRGILKLLAVPRV--SETFYGLSSCLYTIGSLQGIMERVCALPLVVIHQVVKLAIE 446 (1516)
T ss_pred cHHHHHHHHHHHHhhHHHHHHHH-hhhhHHHhcCCCc--hhhhhhHHHHHHHHhhhhhHHHHHhhccHHHHHHHHHHHHH
Confidence 45677788888888888888886 6776666554221 112222334566665554432222 12334444556
Q ss_pred HHhcCCHHHHHHHHHHHHHHcCChhhHHHHhhcCcHHHHHHHhccC-------------------CHHHHHHHHHHHHHh
Q 001833 510 RLSAGPESVKMRMATTLAEMELTDHHKASLLEGNVLGPLLHLVSRG-------------------DIQMKKVAVKALRNL 570 (1008)
Q Consensus 510 ~L~~~~~~~~~~aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~-------------------~~~~~~~A~~aL~~L 570 (1008)
+|.......+.+++..+...-.....-..+-....+..|+.++++. +.......+.+|+.-
T Consensus 447 l~~cs~~~~~~~~~~ff~~~f~frail~~fd~~d~l~~l~~~~~~~~~~~~~n~d~~l~e~~i~ss~Q~~~htC~alR~Y 526 (1516)
T KOG1832|consen 447 LLDCSQDQARKNSALFFAAAFVFRAILDAFDAQDSLQKLLAILKDAASVTGANTDRSLPEVMISSSKQMAFHTCFALRQY 526 (1516)
T ss_pred HHhcchhhccchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhccCcCccccHHHhhhhhhhhhhhHHHHHHH
Confidence 6655444444443322211100111111122234555555554321 111222334444332
Q ss_pred h-----CCCch-hHHHHhcCChHHHHHHhcccCC---CCcchHHHHHHHHHHHhccccccccC-CcccccccchhHHHHH
Q 001833 571 S-----SVPQN-GLQMIKEGAVGPLVDLLLHHSS---SSSSLREETATAIMHLAVSTMYQESS-QTPVTLLESDKEIFML 640 (1008)
Q Consensus 571 ~-----~~~~~-~~~i~~~G~v~~Ll~ll~~~~~---~~~~~~~~a~~~L~nLa~~~~~~~~~-~~~~~~l~~~~~i~~L 640 (1008)
- ..-++ +..-++.|.++..+.-+..+.. .+....+..+|-+..+......-.+. =..++.+..-+++..+
T Consensus 527 f~AHl~Ikve~~~k~~~~r~~~g~~~~~i~~~~~P~~~s~~~~e~I~~q~e~~~~~gp~f~~~~w~~aenflkls~v~~~ 606 (1516)
T KOG1832|consen 527 FRAHLLIKVESIRKSRISRGGVGSSMKNIRAAYKPLDISNEAVEAIFLQLEKDRRLGPTFVKAQWPAAENFLKLSGVVTM 606 (1516)
T ss_pred HHHHHHHHHHhhhhhhcccCCCCccccccccCCCcchhhhhHHHHHHHHHHHHHHhChhhhhhcchHHHHHHHhHHHHHH
Confidence 1 11122 3333444555555543322211 11233455555555554432211100 0112234445677777
Q ss_pred HHhhcc--------CChHHHHHHHHHHHHhccCCChhhHHHHhhh--------cCChHHHHHhhccC----ChhHHHHHH
Q 001833 641 FSLINL--------TGPNVQQRILQTFNALCRSPSAGNIKTTLTQ--------CSAIPVLVQLCEHD----NENVRANAV 700 (1008)
Q Consensus 641 ~~ll~~--------~~~~v~~~al~aL~~L~~~~~~~~~~~~i~e--------~~~i~~Lv~ll~~~----~~~v~~~a~ 700 (1008)
+.+... ...++...|+.+|.-+..- +.++..+.+ ..++..++..-... +++++..|+
T Consensus 607 L~l~~~~~~w~~~spR~d~~~~Al~vL~i~t~i---P~iq~~La~~~~~n~~aydGiaIiL~~a~g~~~i~Dpei~~~AL 683 (1516)
T KOG1832|consen 607 LELCQTPPVWRYLSPRHDLLQYALGVLHIVTSI---PDIQKALAHATLSNNRAYDGIAIILDAANGSNSIVDPEIIQPAL 683 (1516)
T ss_pred HHHHhcCccccccCcchHHHHHHHhheeeeEec---chHHHHHHHHHhhcccccCceEEEeecccccccccCHHHHHHHH
Confidence 777662 2345666777777766654 334444432 12444444433222 789999999
Q ss_pred HHHHHhccCCChhHHHhhh----cccchHHHHHHhcCCCCHHHHHHHHHHHhcCCCChhhHHHHHhcCCHHHHHHHhhCC
Q 001833 701 KLFCCLVDDGDEAIIREHV----GQKCLETLVTIIQSSHNEEEIASAMGILSKLPEVPQFTQWLLDAGALPIVLNFLKNG 776 (1008)
Q Consensus 701 ~~L~~Ls~~~~~~~~~~~~----~~~~i~~Lv~lL~~~~~~~v~~~a~~~L~nL~~~~~~~~~l~~~g~l~~Lv~lL~~~ 776 (1008)
.++.|.. .+++.+....+ ...+-+.. .+..++..+.....++= ....+...+++..|+++|.-.
T Consensus 684 ~vIincV-c~pp~~r~s~i~~v~S~~g~~r~--~l~~~~ks~~le~~l~~---------mw~~Vr~ndGIkiLl~Ll~~k 751 (1516)
T KOG1832|consen 684 NVIINCV-CPPPTTRPSTIVAVGSQSGDRRI--FLGAGTKSAKLEQVLRQ---------MWEAVRGNDGIKILLKLLQYK 751 (1516)
T ss_pred hhhheee-cCCCCcchhhhhhccccCCCccc--cccCCCchHHHHHHHHH---------HHHHHhcCccHHHHHHHHhcc
Confidence 9999987 55543332221 11111110 11111111111222211 123444567999999999974
Q ss_pred CCCCCchhhHHHHHHHHHHHhcCCCCHHHHHHHHHcCCh
Q 001833 777 RQNDPNRFQVVENAVGALRRFTAPTNLEWQKRAAEAGVI 815 (1008)
Q Consensus 777 ~~~~~~~~~v~~~a~~aL~~L~~~~~~~~~~~l~~~g~l 815 (1008)
.+.. ....+|.-||.+|.-|+. ++..++.+.+.-++
T Consensus 752 ~P~t-~aD~IRalAc~~L~GLaR--~~tVrQIltKLpLv 787 (1516)
T KOG1832|consen 752 NPPT-TADCIRALACRVLLGLAR--DDTVRQILTKLPLV 787 (1516)
T ss_pred CCCC-cHHHHHHHHHHHHhcccc--CcHHHHHHHhCccc
Confidence 4332 456799999999999999 68888888776544
No 231
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]
Probab=91.07 E-value=14 Score=41.76 Aligned_cols=226 Identities=14% Similarity=0.108 Sum_probs=128.9
Q ss_pred HHHHhcCCChHHHHHHHHHHHhhcCCc----ccHHHHHhcCcHHHHHHHHhcCC------HH-HHHHHHHHHHHHcCChh
Q 001833 466 LVTMASSDDNQASRDAQELLENLSFSD----DNVVQMAKANYFKHLLQRLSAGP------ES-VKMRMATTLAEMELTDH 534 (1008)
Q Consensus 466 Lv~lL~~~~~~~~~~a~~aL~~Ls~~~----~n~~~i~~~g~v~~Lv~~L~~~~------~~-~~~~aa~~L~~Ls~~~~ 534 (1008)
+..++...+..-+..|+-...+++.++ .|+..+.++=+.+.+-++|.+++ +. .+.-+..+|.-++..++
T Consensus 16 ~~~L~~~k~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~pE 95 (698)
T KOG2611|consen 16 CLKLLKGKRDEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRVPE 95 (698)
T ss_pred HHHHhcccChHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCChh
Confidence 344455556666677776677776544 45777888888888878876542 22 34556667766665554
Q ss_pred hHH--HHhhcCcHHHHHHHhccC-CH------HHHHHHHHHHHHhhCCCchhHHHHhcCChHHHHHHhcccCCCCcchHH
Q 001833 535 HKA--SLLEGNVLGPLLHLVSRG-DI------QMKKVAVKALRNLSSVPQNGLQMIKEGAVGPLVDLLLHHSSSSSSLRE 605 (1008)
Q Consensus 535 ~k~--~i~~~g~i~~Lv~lL~~~-~~------~~~~~A~~aL~~L~~~~~~~~~i~~~G~v~~Ll~ll~~~~~~~~~~~~ 605 (1008)
-.. .+ -..||.|.+.+..+ ++ .+.+.+-.+|..++..+.+...++..|+++.+.+.-.-++.. .-..
T Consensus 96 lAsh~~~--v~~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e~G~~~Lia~G~~~~~~Q~y~~~~~~--~d~a 171 (698)
T KOG2611|consen 96 LASHEEM--VSRIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAEAGLMTLIASGGLRVIAQMYELPDGS--HDMA 171 (698)
T ss_pred hccCHHH--HHhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCchhHHHHhcCchHHHHHHHhCCCCc--hhHH
Confidence 221 22 24689999988754 33 377899999999999999999999999999999665543322 2234
Q ss_pred HHHHHHHHHhccccccccCCcccccccchhHHHHHHHhhc-------cCChHHHHHHHHHHHHhccCCChhhHHHHhhhc
Q 001833 606 ETATAIMHLAVSTMYQESSQTPVTLLESDKEIFMLFSLIN-------LTGPNVQQRILQTFNALCRSPSAGNIKTTLTQC 678 (1008)
Q Consensus 606 ~a~~~L~nLa~~~~~~~~~~~~~~~l~~~~~i~~L~~ll~-------~~~~~v~~~al~aL~~L~~~~~~~~~~~~i~e~ 678 (1008)
.+..++.-+...-.... ..++.++.++. ..+...+-.++..|..+...+..+...+.....
T Consensus 172 lal~Vlll~~~~~~cw~------------e~~~~flali~~va~df~~~~~a~KfElc~lL~~vl~~~~~e~~~~pl~~~ 239 (698)
T KOG2611|consen 172 LALKVLLLLVSKLDCWS------------ETIERFLALIAAVARDFAVLHNALKFELCHLLSAVLSSEYSELLHEPLRSM 239 (698)
T ss_pred HHHHHHHHHHHhcccCc------------CCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhCChHHhccChhhhc
Confidence 44444444444322221 23334444433 223344455666666544432211111111100
Q ss_pred ----CChHHHHHhhccC-ChhHHHHHHHHHHHhc
Q 001833 679 ----SAIPVLVQLCEHD-NENVRANAVKLFCCLV 707 (1008)
Q Consensus 679 ----~~i~~Lv~ll~~~-~~~v~~~a~~~L~~Ls 707 (1008)
..-.-+..++++. .+..|..|+....++.
T Consensus 240 ~w~~~l~~G~~~IL~~kv~p~qr~pAL~Laa~~~ 273 (698)
T KOG2611|consen 240 NWADYLRTGVVAILQNKVAPSQRLPALILAANMM 273 (698)
T ss_pred chHHHHHHHHHHHHhcccCchhcChHHHHHHHHH
Confidence 1112344566665 4555555666555554
No 232
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=90.97 E-value=33 Score=40.66 Aligned_cols=23 Identities=13% Similarity=0.114 Sum_probs=13.5
Q ss_pred ChHHHHHHHHHHHHhccCCChhh
Q 001833 648 GPNVQQRILQTFNALCRSPSAGN 670 (1008)
Q Consensus 648 ~~~v~~~al~aL~~L~~~~~~~~ 670 (1008)
.++.+-..+++|+.++.+....+
T Consensus 281 ~e~~kl~lLk~lAE~s~~~~~~d 303 (556)
T PF05918_consen 281 PEDRKLDLLKLLAELSPFCGAQD 303 (556)
T ss_dssp ---HHHHHHHHHHHHHTT----T
T ss_pred ChHHHHHHHHHHHHHcCCCCccc
Confidence 45778889999999988754433
No 233
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=90.83 E-value=7.9 Score=45.78 Aligned_cols=106 Identities=20% Similarity=0.202 Sum_probs=72.6
Q ss_pred hHHHHHHHhhccCChHHHHHHHHHHHHhccCCChhhHHHHhhhcCChHHHHHhhccCChhHHHHHHHHHHHhccCCChhH
Q 001833 635 KEIFMLFSLINLTGPNVQQRILQTFNALCRSPSAGNIKTTLTQCSAIPVLVQLCEHDNENVRANAVKLFCCLVDDGDEAI 714 (1008)
Q Consensus 635 ~~i~~L~~ll~~~~~~v~~~al~aL~~L~~~~~~~~~~~~i~e~~~i~~Lv~ll~~~~~~v~~~a~~~L~~Ls~~~~~~~ 714 (1008)
+.+..+++-..+.+..+|-.++..|..+... ..++-+. .-.+....+..-+.+..+.+|..|+.+|..+-.+..++
T Consensus 85 ~~f~hlLRg~Eskdk~VRfrvlqila~l~d~--~~eidd~-vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~de- 160 (892)
T KOG2025|consen 85 GTFYHLLRGTESKDKKVRFRVLQILALLSDE--NAEIDDD-VFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKDE- 160 (892)
T ss_pred HHHHHHHhcccCcchhHHHHHHHHHHHHhcc--ccccCHH-HHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCCC-
Confidence 3445555556677888999999999888762 1111111 11234556666677788999999999999995322222
Q ss_pred HHhhhcccchHHHHHHhcCCCCHHHHHHHHHHHhc
Q 001833 715 IREHVGQKCLETLVTIIQSSHNEEEIASAMGILSK 749 (1008)
Q Consensus 715 ~~~~~~~~~i~~Lv~lL~~~~~~~v~~~a~~~L~n 749 (1008)
+-.++..++.++++.++++++.+|+..|.+
T Consensus 161 -----e~~v~n~l~~liqnDpS~EVRRaaLsnI~v 190 (892)
T KOG2025|consen 161 -----ECPVVNLLKDLIQNDPSDEVRRAALSNISV 190 (892)
T ss_pred -----cccHHHHHHHHHhcCCcHHHHHHHHHhhcc
Confidence 235788899999999899999887766544
No 234
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]
Probab=90.76 E-value=10 Score=43.53 Aligned_cols=167 Identities=18% Similarity=0.189 Sum_probs=117.1
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHhhCCCchhHHHHhcCChHHHHHHhcccCC-CCcchHHHHHHHHHHHhcccccccc
Q 001833 545 LGPLLHLVSRGDIQMKKVAVKALRNLSSVPQNGLQMIKEGAVGPLVDLLLHHSS-SSSSLREETATAIMHLAVSTMYQES 623 (1008)
Q Consensus 545 i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~~~~~~~i~~~G~v~~Ll~ll~~~~~-~~~~~~~~a~~~L~nLa~~~~~~~~ 623 (1008)
...+.+++.+++...+..|..-|..++.++.....++...++..|..++.++.. ....+....+.++..+-..+...-
T Consensus 85 a~~i~e~l~~~~~~~~~~a~k~l~sls~d~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgvvsW- 163 (713)
T KOG2999|consen 85 AKRIMEILTEGNNISKMEALKELDSLSLDPTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGVVSW- 163 (713)
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhceeee-
Confidence 346778888999888888999999999999999999999999999999998764 113455555555555544332111
Q ss_pred CCcccccccchhHHHHHHHhhc--cCChHHHHHHHHHHHHhccCCChhhHHHHhhhcCChHHHHHhhccCChhHHHHHHH
Q 001833 624 SQTPVTLLESDKEIFMLFSLIN--LTGPNVQQRILQTFNALCRSPSAGNIKTTLTQCSAIPVLVQLCEHDNENVRANAVK 701 (1008)
Q Consensus 624 ~~~~~~~l~~~~~i~~L~~ll~--~~~~~v~~~al~aL~~L~~~~~~~~~~~~i~e~~~i~~Lv~ll~~~~~~v~~~a~~ 701 (1008)
.-.+...|.....+.+ .-+..+-..|+..|-++... +...+..+.+.--+..|+..++..+..++..|..
T Consensus 164 ------~~~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~--s~~~~~~v~eev~i~~li~hlq~~n~~i~~~aia 235 (713)
T KOG2999|consen 164 ------ESVSNDFVVSMASYVNAKREDANTLLAALQMLESLVLG--SDTLRQLVAEEVPIETLIRHLQVSNQRIQTCAIA 235 (713)
T ss_pred ------eecccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhC--ChHHHHHHHhcCcHHHHHHHHHhcchHHHHHHHH
Confidence 1123345555555543 23445666788888777764 3456778888888999999999999999999888
Q ss_pred HHHHhccCCChhHHHhhhc
Q 001833 702 LFCCLVDDGDEAIIREHVG 720 (1008)
Q Consensus 702 ~L~~Ls~~~~~~~~~~~~~ 720 (1008)
.+..+....+++....+.+
T Consensus 236 l~nal~~~a~~~~R~~~~~ 254 (713)
T KOG2999|consen 236 LLNALFRKAPDDKRFEMAK 254 (713)
T ss_pred HHHHHHhhCChHHHHHHHH
Confidence 8877764444544444443
No 235
>KOG3113 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.50 E-value=0.19 Score=50.92 Aligned_cols=51 Identities=18% Similarity=0.283 Sum_probs=42.6
Q ss_pred ccccccccccccCCc----eeccCcccccHHHHHHHHhcCCCCCCCcCccCCCCCCcc
Q 001833 264 QSFYCPITRDVMVDP----VETSSGQTFERSAIEKWFSDGNNLCPLTMTVLDTSILRP 317 (1008)
Q Consensus 264 ~~~~cpi~~~~m~dp----v~~~~g~t~~r~~i~~w~~~~~~~cp~~~~~l~~~~l~p 317 (1008)
..|+|||++-.|.+- ++.+|||.|.-.+.++.- ..+||+|+......++++
T Consensus 110 a~fiCPvtgleMng~~~F~~l~~CGcV~SerAlKeik---as~C~~C~a~y~~~dvIv 164 (293)
T KOG3113|consen 110 ARFICPVTGLEMNGKYRFCALRCCGCVFSERALKEIK---ASVCHVCGAAYQEDDVIV 164 (293)
T ss_pred ceeecccccceecceEEEEEEeccceeccHHHHHHhh---hccccccCCcccccCeEe
Confidence 579999999999974 556999999998888764 568999999998877654
No 236
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.46 E-value=5.4 Score=48.16 Aligned_cols=227 Identities=14% Similarity=0.146 Sum_probs=137.9
Q ss_pred HHHHHhcccCCCCcchHHHHHHHHHHHhccccccccCCcccccccchhHHHHHHHhhccCChHHHHHHHHHHHHhccCCC
Q 001833 588 PLVDLLLHHSSSSSSLREETATAIMHLAVSTMYQESSQTPVTLLESDKEIFMLFSLINLTGPNVQQRILQTFNALCRSPS 667 (1008)
Q Consensus 588 ~Ll~ll~~~~~~~~~~~~~a~~~L~nLa~~~~~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~aL~~L~~~~~ 667 (1008)
++-+.+.+-.++-+.++..++..|..+.+..... +.+..++.+...+..+++.++-+--+|++.+..||.-
T Consensus 728 ~~qeai~sl~d~qvpik~~gL~~l~~l~e~r~~~-------~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcev-- 798 (982)
T KOG4653|consen 728 PLQEAISSLHDDQVPIKGYGLQMLRHLIEKRKKA-------TLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEV-- 798 (982)
T ss_pred HHHHHHHHhcCCcccchHHHHHHHHHHHHhcchh-------hhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHh--
Confidence 3444444333323568999999999998844221 3566778889999999999999999999988888863
Q ss_pred hhhHHHHhhhcCChHHHHHhhccCC----hhHHHHHHHHHHHhccCCChhHHHhhhcccchHHHHHHhcCCCCHHHHHHH
Q 001833 668 AGNIKTTLTQCSAIPVLVQLCEHDN----ENVRANAVKLFCCLVDDGDEAIIREHVGQKCLETLVTIIQSSHNEEEIASA 743 (1008)
Q Consensus 668 ~~~~~~~i~e~~~i~~Lv~ll~~~~----~~v~~~a~~~L~~Ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~v~~~a 743 (1008)
-....+|.|.+.-.+.. ++.+...-.++.++.... ++......+ -.+......+.+ ++...+..+
T Consensus 799 --------y~e~il~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~-Gel~~~y~~-~Li~tfl~gvre-pd~~~RaSS 867 (982)
T KOG4653|consen 799 --------YPEDILPDLSEEYLSEKKKLQTDYRLKVGEAILKVAQAL-GELVFKYKA-VLINTFLSGVRE-PDHEFRASS 867 (982)
T ss_pred --------cchhhHHHHHHHHHhcccCCCccceehHHHHHHHHHHHh-ccHHHHHHH-HHHHHHHHhcCC-chHHHHHhH
Confidence 22346777777444321 344444556666665221 111111111 122233333333 344568889
Q ss_pred HHHHhcCCC-Chhh-HHHHHhcCCHHHHHHHhhCCCCCCCchhhHHHHHHHHHHHhcCCCCHHHHHHHH--HcCChHHHH
Q 001833 744 MGILSKLPE-VPQF-TQWLLDAGALPIVLNFLKNGRQNDPNRFQVVENAVGALRRFTAPTNLEWQKRAA--EAGVIPKLV 819 (1008)
Q Consensus 744 ~~~L~nL~~-~~~~-~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~v~~~a~~aL~~L~~~~~~~~~~~l~--~~g~l~~Lv 819 (1008)
++.+|+|+. ..-. ..++ ..++..++.+...+ ....+|+.|+..+..+-.+...+...... ..+....+.
T Consensus 868 ~a~lg~Lcq~~a~~vsd~~--~ev~~~Il~l~~~d-----~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~Dl~~tl~ 940 (982)
T KOG4653|consen 868 LANLGQLCQLLAFQVSDFF--HEVLQLILSLETTD-----GSVLVRRAAVHLLAELLNGTGEDLLPILRLLLIDLDETLL 940 (982)
T ss_pred HHHHHHHHHHHhhhhhHHH--HHHHHHHHHHHccC-----CchhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHH
Confidence 999999986 2211 1122 23455566666653 46789999999999999875555443332 223444455
Q ss_pred HHhhc-CChHHHHHHHHHHhhhh
Q 001833 820 QLLEY-GTTLTKEHAATSLARFS 841 (1008)
Q Consensus 820 ~lL~~-~~~~v~~~Aa~aL~nLs 841 (1008)
.+.+. .+..++..|+.++..+-
T Consensus 941 ~~vr~~~dd~~klhaql~leei~ 963 (982)
T KOG4653|consen 941 SYVRQHDDDGLKLHAQLCLEEIQ 963 (982)
T ss_pred HHHhcCchhHHHHHHHHHHHHHH
Confidence 55554 45578899998887664
No 237
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=90.33 E-value=12 Score=44.43 Aligned_cols=137 Identities=20% Similarity=0.162 Sum_probs=98.2
Q ss_pred hcCChHHHHHhhccCChhHHHHHHHHHHHhccCCChhHHHhhhcccchHHHHHHhcCCCCHHHHHHHHHHHhcCCC-Chh
Q 001833 677 QCSAIPVLVQLCEHDNENVRANAVKLFCCLVDDGDEAIIREHVGQKCLETLVTIIQSSHNEEEIASAMGILSKLPE-VPQ 755 (1008)
Q Consensus 677 e~~~i~~Lv~ll~~~~~~v~~~a~~~L~~Ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~v~~~a~~~L~nL~~-~~~ 755 (1008)
+.++=+.+-+++.+.++-+|......+..-= .+. ...+++..|+..--+..+++++.+|+.+|+-++. +++
T Consensus 517 qe~Ad~lI~el~~dkdpilR~~Gm~t~alAy-~GT-------gnnkair~lLh~aVsD~nDDVrRaAVialGFVl~~dp~ 588 (929)
T KOG2062|consen 517 QEDADPLIKELLRDKDPILRYGGMYTLALAY-VGT-------GNNKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDPE 588 (929)
T ss_pred hhhhHHHHHHHhcCCchhhhhhhHHHHHHHH-hcc-------CchhhHHHhhcccccccchHHHHHHHHHheeeEecChh
Confidence 3455566677888889988888776553321 122 1336788888876666778999999999999877 554
Q ss_pred hHHHHHhcCCHHHHHHHhhCCCCCCCchhhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHHHhhcCChHHHHHHHH
Q 001833 756 FTQWLLDAGALPIVLNFLKNGRQNDPNRFQVVENAVGALRRFTAPTNLEWQKRAAEAGVIPKLVQLLEYGTTLTKEHAAT 835 (1008)
Q Consensus 756 ~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~v~~~a~~aL~~L~~~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~v~~~Aa~ 835 (1008)
. ++..+.+|... +++.+|..++.+|+-.|.++ ..+. ++..|-.+..+....||+.|+.
T Consensus 589 ~---------~~s~V~lLses-----~N~HVRyGaA~ALGIaCAGt--G~~e------Ai~lLepl~~D~~~fVRQgAlI 646 (929)
T KOG2062|consen 589 Q---------LPSTVSLLSES-----YNPHVRYGAAMALGIACAGT--GLKE------AINLLEPLTSDPVDFVRQGALI 646 (929)
T ss_pred h---------chHHHHHHhhh-----cChhhhhhHHHHHhhhhcCC--CcHH------HHHHHhhhhcChHHHHHHHHHH
Confidence 4 67778888763 78999999999999999863 1111 2344555556677799999999
Q ss_pred HHhhhhhc
Q 001833 836 SLARFSKN 843 (1008)
Q Consensus 836 aL~nLs~~ 843 (1008)
+++-+..+
T Consensus 647 a~amIm~Q 654 (929)
T KOG2062|consen 647 ALAMIMIQ 654 (929)
T ss_pred HHHHHHHh
Confidence 99988743
No 238
>KOG1788 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.27 E-value=14 Score=45.48 Aligned_cols=252 Identities=15% Similarity=0.157 Sum_probs=150.9
Q ss_pred HHHHHHHhhchhhhhhHhhcCchHHHHHHHcCCCHHHHHHHHHHHHHhccCChhhHHHhhccCCcHHHHHHHhccCh---
Q 001833 357 EQLQDLCQQRDQHREWVILENYIPKLIYLLGSKNRDVRNRALIILHILVKDSNDTKERLANGDDAVESIVRSLGRRI--- 433 (1008)
Q Consensus 357 ~~L~~l~~~~~~~r~~i~~~g~i~~L~~lL~s~~~~~~~~Al~~L~~Ls~~~~~~k~~i~~~~g~i~~Lv~~L~~~~--- 433 (1008)
..|..+.+.+..|...+.+.+++..++.++- +.+.|...++++..|-..++... . ...+-.+|..|.++.
T Consensus 664 DcLisllKnnteNqklFreanGvklilpfli--ndehRSslLrivscLitvdpkqv----h-hqelmalVdtLksgmvt~ 736 (2799)
T KOG1788|consen 664 DCLISLLKNNTENQKLFREANGVKLILPFLI--NDEHRSSLLRIVSCLITVDPKQV----H-HQELMALVDTLKSGMVTR 736 (2799)
T ss_pred HHHHHHHhccchhhHHHHhhcCceEEEEeee--chHHHHHHHHHHHHHhccCcccc----c-HHHHHHHHHHHHhcceec
Confidence 4566778888999999998888777777773 45667667777766655543211 0 123445677775531
Q ss_pred ----------hHHHHHHHHHHHhcc-CchhhHHhhcccchHHHHHHHhc----------CCChHHHHHHHHHHHhh----
Q 001833 434 ----------EERKLAVALLLELST-CNTLRDQIGDVQGCILLLVTMAS----------SDDNQASRDAQELLENL---- 488 (1008)
Q Consensus 434 ----------~~~~~A~~~L~~Ls~-~~~~~~~i~~~~g~i~~Lv~lL~----------~~~~~~~~~a~~aL~~L---- 488 (1008)
........+++.... +-..+..+++ .|+...|...|. .+|.-+-..-...|+++
T Consensus 737 IsgeqyklhfsllcdlmGalwrivgvngsaqrvFge-atGFslLlttLhtfqgftelhdesDlcvyiklfkilFrlfTla 815 (2799)
T KOG1788|consen 737 ISGEQYKLHFSLLCDLMGALWRIVGVNGSAQRVFGE-ATGFSLLLTTLHTFQGFTELHDESDLCVYIKLFKILFRLFTLA 815 (2799)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHccCchheeehhc-cccHHHHHHHHHHhccchhcCCchhhhhHHHHHHHHHHHHHHH
Confidence 123345566676654 4567888887 455555555553 11323333444555544
Q ss_pred -cCCcccHHH-------------HHhcC---------cHHHHHHH----HhcCCHHHHHHHHHHHHHHcC----------
Q 001833 489 -SFSDDNVVQ-------------MAKAN---------YFKHLLQR----LSAGPESVKMRMATTLAEMEL---------- 531 (1008)
Q Consensus 489 -s~~~~n~~~-------------i~~~g---------~v~~Lv~~----L~~~~~~~~~~aa~~L~~Ls~---------- 531 (1008)
|.+..|+.. +.+.| .|..+.++ +..+....-..|+..+..+-.
T Consensus 816 vcenasNrmklhtvITsqtftsLLresgllcvnler~viqlllElalevlvppfLtSEsaAcaeVfelednifavntPsG 895 (2799)
T KOG1788|consen 816 VCENASNRMKLHTVITSQTFTSLLRESGLLCVNLERHVIQLLLELALEVLVPPFLTSESAACAEVFELEDNIFAVNTPSG 895 (2799)
T ss_pred HhhcchhhhheeeeeeHHHHHHHHHHhccceecchHHHHHHHHHHHHHhhCCchhhhhHHHHHHHhhcccceeeeccCCC
Confidence 345555332 23344 23333322 111111222344455555411
Q ss_pred -ChhhHHHHhhcCcHHHHHHHhccCCHHHHHHHHHHHHHhhC-CCchhHHHHhcCChHHHHHHhcccCCCCcchHHHHHH
Q 001833 532 -TDHHKASLLEGNVLGPLLHLVSRGDIQMKKVAVKALRNLSS-VPQNGLQMIKEGAVGPLVDLLLHHSSSSSSLREETAT 609 (1008)
Q Consensus 532 -~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~-~~~~~~~i~~~G~v~~Ll~ll~~~~~~~~~~~~~a~~ 609 (1008)
....+..|...|++..|+..+-...|..+-.-+..+..+++ +|.|..-.-..|.+..|++++.--..++.....++..
T Consensus 896 qfnpdk~~iynagavRvlirslLlnypK~qlefl~lleSlaRaspfnaelltS~gcvellleIiypflsgsspfLshalk 975 (2799)
T KOG1788|consen 896 QFNPDKQKIYNAGAVRVLIRSLLLNYPKLQLEFLNLLESLARASPFNAELLTSAGCVELLLEIIYPFLSGSSPFLSHALK 975 (2799)
T ss_pred CcCchHhhhcccchhHHHHHHHHhhChHHHHHHHHHHHHHhhcCCCchhhhhcccHHHHHHHHhhhhhcCCchHhhccHH
Confidence 12456788899999999999888899999999999999996 6777777778899999998886433222334555555
Q ss_pred HHHHHhc
Q 001833 610 AIMHLAV 616 (1008)
Q Consensus 610 ~L~nLa~ 616 (1008)
++.-|+.
T Consensus 976 IvemLga 982 (2799)
T KOG1788|consen 976 IVEMLGA 982 (2799)
T ss_pred HHHHHhh
Confidence 5554443
No 239
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=90.26 E-value=14 Score=40.57 Aligned_cols=169 Identities=18% Similarity=0.188 Sum_probs=95.9
Q ss_pred hHHHH-HHHcCCCHHHHHHHHHHHHHhccCChhhHHHhhccCCcHHHHHHHhccChhHHHHHHHHHHHhccCchhhHHhh
Q 001833 379 IPKLI-YLLGSKNRDVRNRALIILHILVKDSNDTKERLANGDDAVESIVRSLGRRIEERKLAVALLLELSTCNTLRDQIG 457 (1008)
Q Consensus 379 i~~L~-~lL~s~~~~~~~~Al~~L~~Ls~~~~~~k~~i~~~~g~i~~Lv~~L~~~~~~~~~A~~~L~~Ls~~~~~~~~i~ 457 (1008)
+..|+ ..+.+.++.+|+.|+++|+..+.-+.+ ++. ..++.+...+
T Consensus 28 l~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~----~a~--~~l~l~~~~~---------------------------- 73 (298)
T PF12719_consen 28 LDSLILPAVQSSDPAVRELALKCLGLCCLLDKE----LAK--EHLPLFLQAL---------------------------- 73 (298)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChH----HHH--HHHHHHHHHH----------------------------
Confidence 33333 567788899999999999888776621 221 2233333333
Q ss_pred cccchHHHHHHHhcCCChHHHHHHHHHHHhhcCC-c-ccH-------HHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHH
Q 001833 458 DVQGCILLLVTMASSDDNQASRDAQELLENLSFS-D-DNV-------VQMAKANYFKHLLQRLSAGPESVKMRMATTLAE 528 (1008)
Q Consensus 458 ~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~-~-~n~-------~~i~~~g~v~~Lv~~L~~~~~~~~~~aa~~L~~ 528 (1008)
+.+++.++..|+.++..+... . +.. ........+..+.+.+.+.+++++..++..++.
T Consensus 74 -------------~~~~~~v~~~al~~l~Dll~~~g~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~K 140 (298)
T PF12719_consen 74 -------------QKDDEEVKITALKALFDLLLTHGIDIFDSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCK 140 (298)
T ss_pred -------------HhCCHHHHHHHHHHHHHHHHHcCchhccchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 333444444444444444211 1 000 111224556677788888888999999999998
Q ss_pred HcCChhhHHHHhhcCcHHHHHHHhccC----CHHHHHHHHHHHHHhhCCCchhHHHHhcCChHHHHHHhcccC
Q 001833 529 MELTDHHKASLLEGNVLGPLLHLVSRG----DIQMKKVAVKALRNLSSVPQNGLQMIKEGAVGPLVDLLLHHS 597 (1008)
Q Consensus 529 Ls~~~~~k~~i~~~g~i~~Lv~lL~~~----~~~~~~~A~~aL~~L~~~~~~~~~i~~~G~v~~Ll~ll~~~~ 597 (1008)
|-..+.... ...++..|+-+--++ +...+..-...+-..|......+..+..+.+|.+-.+.....
T Consensus 141 LlL~~~i~~---~~~vL~~Lll~yF~p~t~~~~~LrQ~L~~Ffp~y~~s~~~~Q~~l~~~f~~~l~~~~~~~~ 210 (298)
T PF12719_consen 141 LLLSGRISD---PPKVLSRLLLLYFNPSTEDNQRLRQCLSVFFPVYASSSPENQERLAEAFLPTLRTLSNAPD 210 (298)
T ss_pred HHhcCCCCc---HHHHHHHHHHHHcCcccCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhCcc
Confidence 743331110 123444444433332 345555555555566665555556667778888888887644
No 240
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=90.12 E-value=0.2 Score=54.61 Aligned_cols=42 Identities=24% Similarity=0.620 Sum_probs=37.6
Q ss_pred cccccccccccCC---ceeccCcccccHHHHHHHHhcCC--CCCCCc
Q 001833 265 SFYCPITRDVMVD---PVETSSGQTFERSAIEKWFSDGN--NLCPLT 306 (1008)
Q Consensus 265 ~~~cpi~~~~m~d---pv~~~~g~t~~r~~i~~w~~~~~--~~cp~~ 306 (1008)
-|.|||.++--.| |+.++|||...|.+|-+-...|. ..||.|
T Consensus 334 vF~CPVlKeqtsdeNPPm~L~CGHVISkdAlnrLS~ng~~sfKCPYC 380 (394)
T KOG2817|consen 334 VFICPVLKEQTSDENPPMMLICGHVISKDALNRLSKNGSQSFKCPYC 380 (394)
T ss_pred eeecccchhhccCCCCCeeeeccceecHHHHHHHhhCCCeeeeCCCC
Confidence 4899999998885 99999999999999999888776 678888
No 241
>KOG1566 consensus Conserved protein Mo25 [Function unknown]
Probab=89.68 E-value=16 Score=39.28 Aligned_cols=228 Identities=11% Similarity=0.154 Sum_probs=152.7
Q ss_pred HhhhcCChHHHHHhhccCChhHHHHHHHHHHHhccC--CChhHHHhhhcccchHHHHHHhcCCC-CHHHHHHHHHHHhcC
Q 001833 674 TLTQCSAIPVLVQLCEHDNENVRANAVKLFCCLVDD--GDEAIIREHVGQKCLETLVTIIQSSH-NEEEIASAMGILSKL 750 (1008)
Q Consensus 674 ~i~e~~~i~~Lv~ll~~~~~~v~~~a~~~L~~Ls~~--~~~~~~~~~~~~~~i~~Lv~lL~~~~-~~~v~~~a~~~L~nL 750 (1008)
.+-.+|..+.|+..+...+-+.+..+.....++-.. ++.......+.+ -.+.+-.++.... .+++...+-..|...
T Consensus 74 ef~~~~~l~~lI~~l~~l~fE~rkD~~~ifnnllr~qvgtr~~tv~Yl~t-~~e~~~~lv~~~~~~~~iaL~cg~mlrEc 152 (342)
T KOG1566|consen 74 EFYNADVLSLLIQHLPKLEFESRKDVLQIFNNLLRRQVGTRSPTVEYLET-NPEILDNLVKGYENTPEIALTCGNMLREC 152 (342)
T ss_pred HHHhCCchHHHHHhhhcccchhhhHHHHHHHHHHHhhcCCcchHHHHHHh-CHHHHHHHHhhhccchHHHHHHHHHHHHH
Confidence 455678899999999999999999999888888522 111112222211 1222233333333 245555555667776
Q ss_pred CCChhhHHHHHhcCCHHHHHHHhhCCCCCCCchhhHHHHHHHHHHHhcCCCCHHHHHHHHHcCC----hHHHHHHhhcCC
Q 001833 751 PEVPQFTQWLLDAGALPIVLNFLKNGRQNDPNRFQVVENAVGALRRFTAPTNLEWQKRAAEAGV----IPKLVQLLEYGT 826 (1008)
Q Consensus 751 ~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~v~~~a~~aL~~L~~~~~~~~~~~l~~~g~----l~~Lv~lL~~~~ 826 (1008)
...+...+.+....-+......++. +.-++...|..+.-.+... .......+...+. ...--.++++++
T Consensus 153 irhe~LakiiL~s~~~~~FF~~vq~------p~FdiasdA~~tfK~llt~-Hk~~vaEfl~~n~d~ff~e~~~~Ll~s~N 225 (342)
T KOG1566|consen 153 IRHEFLAKIILESTNFEKFFLYVQL------PNFDIASDAFSTFKELLTR-HKSVVAEFLIRNYDNFFAEVYEKLLRSEN 225 (342)
T ss_pred HhhHHHHHHHHcchhHHHHHHHHhc------cchHHHHHHHHHHHHHHHH-hHHHHHHHHHhChhhhHHHHHHHHhcccc
Confidence 7788888888888888888888888 4567777777777766653 3333334433332 334667888999
Q ss_pred hHHHHHHHHHHhhhhhcCCCCCCCCCCCCcccccCCCCCCcccccCcccCcccchhHhhccchHHHHHhhcCCChhhhHH
Q 001833 827 TLTKEHAATSLARFSKNSLGLSRPIPKRKGFWCFSPPPEIGCQVHGGLCGIESSFCLLEANAVRPLVRVLEDPDHGACEA 906 (1008)
Q Consensus 827 ~~v~~~Aa~aL~nLs~~~~~l~~~~~~~~g~~~~~~~~~~~c~vh~~~c~~~~~~~l~~~g~i~~Lv~lL~~~d~~v~~~ 906 (1008)
--+++.+...++.+-...++ +...+.++-....++.+..+|+++...++..
T Consensus 226 yvtkrqs~kllg~llldr~N-----------------------------~~~M~kYiss~enLKlmM~llrdkskniQ~e 276 (342)
T KOG1566|consen 226 YVTKRQSLKLLGELLLDRSN-----------------------------SAVMTKYISSPENLKLMMNLLRDKSKNIQLE 276 (342)
T ss_pred eehHHHHHHhHHHHHhCCCc-----------------------------HHHHHHHhcCHHHHHHHHHHhhCccccchHH
Confidence 99999999999999865443 2223444555567889999999999999999
Q ss_pred HHHHHHhhh-cccccchhhHHHHhcCchHHHHHHh
Q 001833 907 SLDALVTLI-EGERLQNGSKVLEDANAIDRMVRFL 940 (1008)
Q Consensus 907 al~aL~~L~-~~~~~~~~~~~i~~~~~i~~l~~ll 940 (1008)
|-.....++ +..+.+.....+... -++|.+++
T Consensus 277 AFhvFKvfvAnpnK~q~V~~IL~~N--r~KLl~~l 309 (342)
T KOG1566|consen 277 AFHVFKVFVANPNKPQPVRDILVRN--RPKLLELL 309 (342)
T ss_pred HHHHHHHHhcCCCCCchHHHHHHhC--cHHHHHHH
Confidence 999999999 776666666665554 34555554
No 242
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=89.67 E-value=0.51 Score=31.98 Aligned_cols=29 Identities=21% Similarity=0.370 Sum_probs=25.5
Q ss_pred cHHHHHHHhccCCHHHHHHHHHHHHHhhC
Q 001833 544 VLGPLLHLVSRGDIQMKKVAVKALRNLSS 572 (1008)
Q Consensus 544 ~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~ 572 (1008)
++|.+++++.++++++|..|+.+|..++.
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 37899999999999999999999999874
No 243
>KOG1788 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.17 E-value=68 Score=39.93 Aligned_cols=292 Identities=13% Similarity=0.145 Sum_probs=155.1
Q ss_pred chHHHHHHH-hcCCChHHHHHHHHHHHhh-cCCcccHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHHc---CChhh
Q 001833 461 GCILLLVTM-ASSDDNQASRDAQELLENL-SFSDDNVVQMAKANYFKHLLQRLSAGPESVKMRMATTLAEME---LTDHH 535 (1008)
Q Consensus 461 g~i~~Lv~l-L~~~~~~~~~~a~~aL~~L-s~~~~n~~~i~~~g~v~~Lv~~L~~~~~~~~~~aa~~L~~Ls---~~~~~ 535 (1008)
.++..|-.+ |+..+...+...+..++.+ +.+++|-...-+.--++.++.-+...+..++...+.+|-.-. .+-..
T Consensus 466 eAvqmLqdiFLkaenkdlqaeVlnrmfkIftshpeNYricqelytvpllvlnmegfPsslqvkiLkilEyAVtvvncvPe 545 (2799)
T KOG1788|consen 466 EAVQMLQDIFLKAENKDLQAEVLNRMFKIFTSHPENYRICQELYTVPLLVLNMEGFPSSLQVKILKILEYAVTVVNCVPE 545 (2799)
T ss_pred HHHHHHHHHHHHhcCcchhhHHHHHHHHHhccChHHhhHHhhccccchhhhhhcCCChHHHHHHHHHHHHHHhhhccCcH
Confidence 344555443 3466777777777888777 457777666666667777777776666666666655553210 01111
Q ss_pred HHHHhhcCcHHHHHHHhccC-CHHHHHHHHHHHHHhhC-CCchhHHHHhcCChHHHHHHhcccCCC-CcchHHHHHHHHH
Q 001833 536 KASLLEGNVLGPLLHLVSRG-DIQMKKVAVKALRNLSS-VPQNGLQMIKEGAVGPLVDLLLHHSSS-SSSLREETATAIM 612 (1008)
Q Consensus 536 k~~i~~~g~i~~Lv~lL~~~-~~~~~~~A~~aL~~L~~-~~~~~~~i~~~G~v~~Ll~ll~~~~~~-~~~~~~~a~~~L~ 612 (1008)
++. -.|.-+|+.+ +...+..-+.....|-+ +...++.+.+-|++..|...++.+.-- -|. +.. . ..
T Consensus 546 qEL-------lSLCvLLqqpIssalkhtIlsffvKLIsfDqqyKkvlREVGvLevLqddlkqhkll~gpd-qys--g-vs 614 (2799)
T KOG1788|consen 546 QEL-------LSLCVLLQQPISSALKHTILSFFVKLISFDQQYKKVLREVGVLEVLQDDLKQHKLLRGPD-QYS--G-VS 614 (2799)
T ss_pred HHH-------HHHHHHhcchhhHHHHHHHHHHHHHHhhHHHHHHHHHHHhhHHHHHHHHHHHhhhccCcc-hhh--h-HH
Confidence 111 1333445444 33344444444455554 445667777889999998888753210 000 000 0 00
Q ss_pred HHhccccccccCCcccccccchhHHHHHHHhhccCC--hHHHHHH------HHHHHHhccCCChhhHHHHhhhcCChHHH
Q 001833 613 HLAVSTMYQESSQTPVTLLESDKEIFMLFSLINLTG--PNVQQRI------LQTFNALCRSPSAGNIKTTLTQCSAIPVL 684 (1008)
Q Consensus 613 nLa~~~~~~~~~~~~~~~l~~~~~i~~L~~ll~~~~--~~v~~~a------l~aL~~L~~~~~~~~~~~~i~e~~~i~~L 684 (1008)
.....+.. .+.+.+-+.+.+++..--.+..+.+ ..+.+.. -.+|..+.++ +.+....++++.++..+
T Consensus 615 ehydrnps---s~sf~~~ld~~daiisspklmeSgsgklplfevlltitvgwDcLisllKn--nteNqklFreanGvkli 689 (2799)
T KOG1788|consen 615 EHYDRNPS---SPSFKQHLDSQDAIISSPKLMESGSGKLPLFEVLLTITVGWDCLISLLKN--NTENQKLFREANGVKLI 689 (2799)
T ss_pred HHhhcCCC---CchhhhccccccceeecchhhcccCCccchhhhhhhhhchHHHHHHHHhc--cchhhHHHHhhcCceEE
Confidence 01100000 0111112222222211111222211 1111111 2345555553 56778889999999999
Q ss_pred HHhhccCChhHHHHHHHHHHHhccCCChhHHHhhhcccchHHHHHHhcCC-----C--CH----HHHHHHHHHHhcCCC-
Q 001833 685 VQLCEHDNENVRANAVKLFCCLVDDGDEAIIREHVGQKCLETLVTIIQSS-----H--NE----EEIASAMGILSKLPE- 752 (1008)
Q Consensus 685 v~ll~~~~~~v~~~a~~~L~~Ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~-----~--~~----~v~~~a~~~L~nL~~- 752 (1008)
+.++ -+++.|...++++..|....+.. +...-+-.+|+.|+++ + .- ......+++++.+..
T Consensus 690 lpfl--indehRSslLrivscLitvdpkq-----vhhqelmalVdtLksgmvt~IsgeqyklhfsllcdlmGalwrivgv 762 (2799)
T KOG1788|consen 690 LPFL--INDEHRSSLLRIVSCLITVDPKQ-----VHHQELMALVDTLKSGMVTRISGEQYKLHFSLLCDLMGALWRIVGV 762 (2799)
T ss_pred EEee--echHHHHHHHHHHHHHhccCccc-----ccHHHHHHHHHHHHhcceeccchhHHHHHHHHHHHHHHHHHHHHcc
Confidence 8888 45677778888887775222211 1223456778888774 1 11 233455677777766
Q ss_pred ChhhHHHHHhcCCHHHHHHHhhC
Q 001833 753 VPQFTQWLLDAGALPIVLNFLKN 775 (1008)
Q Consensus 753 ~~~~~~~l~~~g~l~~Lv~lL~~ 775 (1008)
+-..+...-++++...|...|..
T Consensus 763 ngsaqrvFgeatGFslLlttLht 785 (2799)
T KOG1788|consen 763 NGSAQRVFGEATGFSLLLTTLHT 785 (2799)
T ss_pred CchheeehhccccHHHHHHHHHH
Confidence 66666677788888888888775
No 244
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=89.05 E-value=1.2 Score=46.95 Aligned_cols=82 Identities=17% Similarity=0.244 Sum_probs=66.6
Q ss_pred ccchhHhhccchHHHHHhhc-CCChhhhHHHHHHHHhhh-cccccchhhHHHHhcCchHHHHHHhcC--CChHHHHHHHH
Q 001833 878 ESSFCLLEANAVRPLVRVLE-DPDHGACEASLDALVTLI-EGERLQNGSKVLEDANAIDRMVRFLSS--PSPKLQEKALD 953 (1008)
Q Consensus 878 ~~~~~l~~~g~i~~Lv~lL~-~~d~~v~~~al~aL~~L~-~~~~~~~~~~~i~~~~~i~~l~~ll~~--~~~~l~~~a~~ 953 (1008)
.....+.+...++.|+++|. ...+.++.+++.+|..++ +. ..+...|.+.+|+..+..++++ .+.+++-+.+.
T Consensus 124 ~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~---p~N~r~FE~~~Gl~~v~~llk~~~~~~~~r~K~~E 200 (257)
T PF08045_consen 124 PSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDS---PENQRDFEELNGLSTVCSLLKSKSTDRELRLKCIE 200 (257)
T ss_pred hHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcC---hHHHHHHHHhCCHHHHHHHHccccccHHHhHHHHH
Confidence 33445567889999999995 567889999999999999 54 3788899999999999999965 46788889998
Q ss_pred HHHHHhcCh
Q 001833 954 SVERIFRLP 962 (1008)
Q Consensus 954 ~L~~l~~~~ 962 (1008)
.|.=|+..+
T Consensus 201 FL~fyl~~E 209 (257)
T PF08045_consen 201 FLYFYLMPE 209 (257)
T ss_pred HHHHHHccc
Confidence 887766554
No 245
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=89.05 E-value=7.5 Score=42.75 Aligned_cols=226 Identities=14% Similarity=0.138 Sum_probs=132.4
Q ss_pred cchHHHHHHHHHHHhccccccccCCcccccccchhHHHHHHHhhccCChHHHHHHHHHHHHhccCCChhhHHHH------
Q 001833 601 SSLREETATAIMHLAVSTMYQESSQTPVTLLESDKEIFMLFSLINLTGPNVQQRILQTFNALCRSPSAGNIKTT------ 674 (1008)
Q Consensus 601 ~~~~~~a~~~L~nLa~~~~~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~aL~~L~~~~~~~~~~~~------ 674 (1008)
+.+++.|+.+|+-.+--+... ....+..+...++..++.++..+++++..+...-+.......
T Consensus 41 ~~vR~~al~cLGl~~Lld~~~-----------a~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~~~~~~~~~ 109 (298)
T PF12719_consen 41 PAVRELALKCLGLCCLLDKEL-----------AKEHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFDSESDNDES 109 (298)
T ss_pred HHHHHHHHHHHHHHHHhChHH-----------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhccchhccCcc
Confidence 689999999999887533311 234566777778777899999999999988753221111111
Q ss_pred hhhcCChHHHHHhhccCChhHHHHHHHHHHHhccCCChhHHHhhhc-ccchHHHHHHhcCC---CCHHHHHHHHHHHhcC
Q 001833 675 LTQCSAIPVLVQLCEHDNENVRANAVKLFCCLVDDGDEAIIREHVG-QKCLETLVTIIQSS---HNEEEIASAMGILSKL 750 (1008)
Q Consensus 675 i~e~~~i~~Lv~ll~~~~~~v~~~a~~~L~~Ls~~~~~~~~~~~~~-~~~i~~Lv~lL~~~---~~~~v~~~a~~~L~nL 750 (1008)
......+..+...+.+.+++++..|+..++.|--.+. +.. ...+..|+-+--++ ++...+..-.-.+-..
T Consensus 110 ~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~------i~~~~~vL~~Lll~yF~p~t~~~~~LrQ~L~~Ffp~y 183 (298)
T PF12719_consen 110 VDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGR------ISDPPKVLSRLLLLYFNPSTEDNQRLRQCLSVFFPVY 183 (298)
T ss_pred chHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCC------CCcHHHHHHHHHHHHcCcccCCcHHHHHHHHHHHHHH
Confidence 1123457788888899999999999999999752221 112 34555665554444 2333433333345555
Q ss_pred CCChhhHHHHHhcCCHHHHHHHhhCCCCCCCchhh-HHHHHHHHHHHhcCCCCHH--HHH-----HHHHcCChHHHHHHh
Q 001833 751 PEVPQFTQWLLDAGALPIVLNFLKNGRQNDPNRFQ-VVENAVGALRRFTAPTNLE--WQK-----RAAEAGVIPKLVQLL 822 (1008)
Q Consensus 751 ~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~-v~~~a~~aL~~L~~~~~~~--~~~-----~l~~~g~l~~Lv~lL 822 (1008)
+......+..+...+++.+..+.........+... --...+..+..++.+.... ... .....=++..+..+.
T Consensus 184 ~~s~~~~Q~~l~~~f~~~l~~~~~~~~~~~~~~~~v~~~~v~~~lv~lt~~~~~~~~~~~~~~~~~~h~~La~~il~~i~ 263 (298)
T PF12719_consen 184 ASSSPENQERLAEAFLPTLRTLSNAPDELDSPLAMVSPSQVASFLVDLTDPSKLVKESNQEIQNESVHVDLAIDILNEIL 263 (298)
T ss_pred HcCCHHHHHHHHHHHHHHHHHHHhCcccccCchhhCCHHHHHHHHHHHCChhhccCccccccccccHHHHHHHHHHHHHH
Confidence 66444446677788889988888874421111111 1346666677777641000 000 011111234444444
Q ss_pred hcCCh--HHHHHHHHHHhhhhhc
Q 001833 823 EYGTT--LTKEHAATSLARFSKN 843 (1008)
Q Consensus 823 ~~~~~--~v~~~Aa~aL~nLs~~ 843 (1008)
.+... ..++.-+.+|.+|...
T Consensus 264 ~~~~~~~~~~k~~~~~L~~L~i~ 286 (298)
T PF12719_consen 264 SDPEKEKEERKALCKALSKLEIS 286 (298)
T ss_pred hccccchHHHHHHHHHHhccccC
Confidence 43333 3778888888888744
No 246
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=89.01 E-value=0.27 Score=51.16 Aligned_cols=48 Identities=21% Similarity=0.451 Sum_probs=37.6
Q ss_pred cccccccccccC--C-ceeccCcccccHHHHHHHHhcCCCCCCCcCccCCC
Q 001833 265 SFYCPITRDVMV--D-PVETSSGQTFERSAIEKWFSDGNNLCPLTMTVLDT 312 (1008)
Q Consensus 265 ~~~cpi~~~~m~--d-pv~~~~g~t~~r~~i~~w~~~~~~~cp~~~~~l~~ 312 (1008)
-.-|-||.+-+. | -++++|.|.|-+.|+++|+..-...||+|+.++++
T Consensus 323 GveCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~~~y~~~CPvCrt~iPP 373 (374)
T COG5540 323 GVECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLGYSNKCPVCRTAIPP 373 (374)
T ss_pred CceEEEEhhhhcccceEEEeccCceechhHHHHHHhhhcccCCccCCCCCC
Confidence 356788877654 3 45569999999999999997556679999987753
No 247
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=88.93 E-value=26 Score=42.50 Aligned_cols=236 Identities=13% Similarity=0.106 Sum_probs=127.2
Q ss_pred chHHHHHHHhcCCChHHHHHHHHHHHhhcCCccc----HHHHHhcC---cHHHHHHHHhcCCHHH--HHHHHHHHHHHcC
Q 001833 461 GCILLLVTMASSDDNQASRDAQELLENLSFSDDN----VVQMAKAN---YFKHLLQRLSAGPESV--KMRMATTLAEMEL 531 (1008)
Q Consensus 461 g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~~~n----~~~i~~~g---~v~~Lv~~L~~~~~~~--~~~aa~~L~~Ls~ 531 (1008)
..+..|+++|+.-+.+.......-+.. .. ... ...+...| ++..+.+.+..+.... .......+.....
T Consensus 311 ~~f~~lv~~lR~~~~e~l~~l~~~~~~-~~-~~~r~~~~Dal~~~GT~~a~~~i~~~i~~~~~~~~ea~~~~~~~~~~~~ 388 (574)
T smart00638 311 AKFLRLVRLLRTLSEEQLEQLWRQLYE-KK-KKARRIFLDAVAQAGTPPALKFIKQWIKNKKITPLEAAQLLAVLPHTAR 388 (574)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHh-CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhh
Confidence 345556666665555544444443332 11 111 22233333 4555666677664222 1222222222111
Q ss_pred ChhhHHHHhhcCcHHHHHHHhccC----CHHHHHHHHHHHHHhh----CCCchhHHHHhcCChHHHHHHhcccC-CCCcc
Q 001833 532 TDHHKASLLEGNVLGPLLHLVSRG----DIQMKKVAVKALRNLS----SVPQNGLQMIKEGAVGPLVDLLLHHS-SSSSS 602 (1008)
Q Consensus 532 ~~~~k~~i~~~g~i~~Lv~lL~~~----~~~~~~~A~~aL~~L~----~~~~~~~~i~~~G~v~~Ll~ll~~~~-~~~~~ 602 (1008)
.+ ....+..+.+++.++ .+.++..|.-++++|. .....+...+....++.+.+.+.... ..+..
T Consensus 389 ~P-------t~~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~ 461 (574)
T smart00638 389 YP-------TEEILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEE 461 (574)
T ss_pred cC-------CHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCch
Confidence 11 123456667777653 5567777777777665 22222212223346777777775431 11133
Q ss_pred hHHHHHHHHHHHhccccccccCCcccccccchhHHHHHHHhhc---cCChHHHHHHHHHHHHhccCCChhhHHHHhhhcC
Q 001833 603 LREETATAIMHLAVSTMYQESSQTPVTLLESDKEIFMLFSLIN---LTGPNVQQRILQTFNALCRSPSAGNIKTTLTQCS 679 (1008)
Q Consensus 603 ~~~~a~~~L~nLa~~~~~~~~~~~~~~~l~~~~~i~~L~~ll~---~~~~~v~~~al~aL~~L~~~~~~~~~~~~i~e~~ 679 (1008)
-+..++.+|+|+.. ...+..+...+. ..++.+|..|+++|..++.. .+..
T Consensus 462 ~~~~~LkaLGN~g~-----------------~~~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~-~p~~--------- 514 (574)
T smart00638 462 EIQLYLKALGNAGH-----------------PSSIKVLEPYLEGAEPLSTFIRLAAILALRNLAKR-DPRK--------- 514 (574)
T ss_pred heeeHHHhhhccCC-----------------hhHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHh-CchH---------
Confidence 45567788887753 345555665555 23567999999999988752 1222
Q ss_pred ChHHHHHhhccC--ChhHHHHHHHHHHHhccCCChhHHHhhhcccchHHHHHHhcCCCCHHHHHHH
Q 001833 680 AIPVLVQLCEHD--NENVRANAVKLFCCLVDDGDEAIIREHVGQKCLETLVTIIQSSHNEEEIASA 743 (1008)
Q Consensus 680 ~i~~Lv~ll~~~--~~~v~~~a~~~L~~Ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~v~~~a 743 (1008)
.-+.|+.+..+. ++++|..|...|...- .+ ...+..+++.+....+..+....
T Consensus 515 v~~~l~~i~~n~~e~~EvRiaA~~~lm~t~--P~---------~~~l~~ia~~l~~E~~~QV~sfv 569 (574)
T smart00638 515 VQEVLLPIYLNRAEPPEVRMAAVLVLMETK--PS---------VALLQRIAELLNKEPNLQVASFV 569 (574)
T ss_pred HHHHHHHHHcCCCCChHHHHHHHHHHHhcC--CC---------HHHHHHHHHHHhhcCcHHHHHHh
Confidence 355677777664 6889998887776552 22 24566777777776665554433
No 248
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.33 E-value=46 Score=38.10 Aligned_cols=142 Identities=16% Similarity=0.159 Sum_probs=87.0
Q ss_pred ccCChhHHHHHHHHHHHhccCCChhHHHhhhcccchHHHHHHhcCCCCHHHHHHHHHHHhcCCC---ChhhHHHHHhcCC
Q 001833 689 EHDNENVRANAVKLFCCLVDDGDEAIIREHVGQKCLETLVTIIQSSHNEEEIASAMGILSKLPE---VPQFTQWLLDAGA 765 (1008)
Q Consensus 689 ~~~~~~v~~~a~~~L~~Ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~v~~~a~~~L~nL~~---~~~~~~~l~~~g~ 765 (1008)
.+++..++..|++.|.+.+ .+.++....+ ....+..++.-|.++.+.+|+..++.+|..+.. +......++ .+
T Consensus 268 ~dp~a~~r~~a~r~L~~~a-s~~P~kv~th-~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~~l~~~~l--~i 343 (533)
T KOG2032|consen 268 TDPSAKSRGMACRGLGNTA-SGAPDKVRTH-KTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASNDDLESYLL--NI 343 (533)
T ss_pred cCchhHHHHHHHHHHHHHh-ccCcHHHHHh-HHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhcchhhhch--hH
Confidence 4556788999999999998 5555555444 335677777777777677899999988887765 332222221 23
Q ss_pred HHHHHHHhhCCCCCCCchhhHHHHHHHHHHHhcCCCCHHHHHHHHH--cCChHHHHHHhhcCChHHHHHHHHHHhhhh
Q 001833 766 LPIVLNFLKNGRQNDPNRFQVVENAVGALRRFTAPTNLEWQKRAAE--AGVIPKLVQLLEYGTTLTKEHAATSLARFS 841 (1008)
Q Consensus 766 l~~Lv~lL~~~~~~~~~~~~v~~~a~~aL~~L~~~~~~~~~~~l~~--~g~l~~Lv~lL~~~~~~v~~~Aa~aL~nLs 841 (1008)
.-.+..+..+ .++.++.++...++.|+.-....+...+.+ .+....|+-.+.+.+|.+-. ||.......
T Consensus 344 alrlR~l~~s------e~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d~~p~va~-ACr~~~~~c 414 (533)
T KOG2032|consen 344 ALRLRTLFDS------EDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHLQDPNPYVAR-ACRSELRTC 414 (533)
T ss_pred HHHHHHHHHh------cChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeeeCCCChHHHH-HHHHHHHhc
Confidence 3456677777 677888888887777764322333333321 12233455556677775554 555554443
No 249
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=88.25 E-value=9.8 Score=45.07 Aligned_cols=127 Identities=17% Similarity=0.169 Sum_probs=79.1
Q ss_pred HHHHHHHHHhcCCCChhhHHHHHhcCCHHHHHHHhhCCCCCCCchhhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHH
Q 001833 739 EIASAMGILSKLPEVPQFTQWLLDAGALPIVLNFLKNGRQNDPNRFQVVENAVGALRRFTAPTNLEWQKRAAEAGVIPKL 818 (1008)
Q Consensus 739 v~~~a~~~L~nL~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~v~~~a~~aL~~L~~~~~~~~~~~l~~~g~l~~L 818 (1008)
+..-+++.+..+...+.... +-.|.+..++.-... .+..+|..++..|..+... ...+....-.++...+
T Consensus 62 Il~fla~fv~sl~q~d~e~D--lV~~~f~hlLRg~Es------kdk~VRfrvlqila~l~d~--~~eidd~vfn~l~e~l 131 (892)
T KOG2025|consen 62 ILSFLARFVESLPQLDKEED--LVAGTFYHLLRGTES------KDKKVRFRVLQILALLSDE--NAEIDDDVFNKLNEKL 131 (892)
T ss_pred HHHHHHHHHHhhhccCchhh--HHHHHHHHHHhcccC------cchhHHHHHHHHHHHHhcc--ccccCHHHHHHHHHHH
Confidence 33445555555555221111 112334444444444 6788999999999999873 2222223334556667
Q ss_pred HHHhhcCChHHHHHHHHHHhhhhhcCCCCCCCCCCCCcccccCCCCCCcccccCcccCcccchhHhhccchHHHHHhhc-
Q 001833 819 VQLLEYGTTLTKEHAATSLARFSKNSLGLSRPIPKRKGFWCFSPPPEIGCQVHGGLCGIESSFCLLEANAVRPLVRVLE- 897 (1008)
Q Consensus 819 v~lL~~~~~~v~~~Aa~aL~nLs~~~~~l~~~~~~~~g~~~~~~~~~~~c~vh~~~c~~~~~~~l~~~g~i~~Lv~lL~- 897 (1008)
..-+.+..|.||..|..+|+.+-.+. .+..|| ++..+..+++
T Consensus 132 ~~Rl~Drep~VRiqAv~aLsrlQ~d~-------------------~dee~~------------------v~n~l~~liqn 174 (892)
T KOG2025|consen 132 LIRLKDREPNVRIQAVLALSRLQGDP-------------------KDEECP------------------VVNLLKDLIQN 174 (892)
T ss_pred HHHHhccCchHHHHHHHHHHHHhcCC-------------------CCCccc------------------HHHHHHHHHhc
Confidence 77777889999999999999986321 223343 4677888887
Q ss_pred CCChhhhHHHHHHHHhhh
Q 001833 898 DPDHGACEASLDALVTLI 915 (1008)
Q Consensus 898 ~~d~~v~~~al~aL~~L~ 915 (1008)
+++++||.+| |.++.
T Consensus 175 DpS~EVRRaa---LsnI~ 189 (892)
T KOG2025|consen 175 DPSDEVRRAA---LSNIS 189 (892)
T ss_pred CCcHHHHHHH---HHhhc
Confidence 7888999876 45555
No 250
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=88.23 E-value=3.3 Score=40.60 Aligned_cols=146 Identities=18% Similarity=0.167 Sum_probs=93.4
Q ss_pred HHHHHHHhc--cCCHHHHHHHHHHHHHhhCCCchhHHHHhcCChHHHHHHhcccCCCCcchHHHHHHHHHHHhccccccc
Q 001833 545 LGPLLHLVS--RGDIQMKKVAVKALRNLSSVPQNGLQMIKEGAVGPLVDLLLHHSSSSSSLREETATAIMHLAVSTMYQE 622 (1008)
Q Consensus 545 i~~Lv~lL~--~~~~~~~~~A~~aL~~L~~~~~~~~~i~~~G~v~~Ll~ll~~~~~~~~~~~~~a~~~L~nLa~~~~~~~ 622 (1008)
+..++..|. ..++.++..++-++..+- +..+.... .-.-..+-.++..+. .+-...+..++..+--.....
T Consensus 5 l~~lL~~L~~~~~~~~~r~~a~v~l~k~l--~~~~~~~~-~~~~~~i~~~~~~~~---~d~~i~~~~~l~~lfp~~~dv- 77 (157)
T PF11701_consen 5 LDTLLTSLDMLRQPEEVRSHALVILSKLL--DAAREEFK-EKISDFIESLLDEGE---MDSLIIAFSALTALFPGPPDV- 77 (157)
T ss_dssp CCHHHHHHHCTTTSCCHHHHHHHHHHHHH--HHHHHHHH-HHHHHHHHHHHCCHH---CCHHHHHHHHHHHHCTTTHHH-
T ss_pred HHHHHHHhcccCCCHhHHHHHHHHHHHHH--HHhHHHHH-HHHHHHHHHHHcccc---chhHHHHHHHHHHHhCCCHHH-
Confidence 334444443 346678888888888773 22222221 112233334444333 234667777777765433222
Q ss_pred cCCcccccccchhHHHHHHHhhc--cCChHHHHHHHHHHHHhccCCChhhHHHHhhhcCChHHHHHhhcc-CChh-HHHH
Q 001833 623 SSQTPVTLLESDKEIFMLFSLIN--LTGPNVQQRILQTFNALCRSPSAGNIKTTLTQCSAIPVLVQLCEH-DNEN-VRAN 698 (1008)
Q Consensus 623 ~~~~~~~~l~~~~~i~~L~~ll~--~~~~~v~~~al~aL~~L~~~~~~~~~~~~i~e~~~i~~Lv~ll~~-~~~~-v~~~ 698 (1008)
+..++.++|..+.++.+.. ..+..++..++++|..-|.+ +.+|..+.+. +++.|-.+++. +++. ++..
T Consensus 78 ----~~~l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~d---~~~r~~I~~~-~~~~L~~~~~~~~~~~~ir~~ 149 (157)
T PF11701_consen 78 ----GSELFLSEGFLESLLPLASRKSKDRKVQKAALELLSAACID---KSCRTFISKN-YVSWLKELYKNSKDDSEIRVL 149 (157)
T ss_dssp ----HHHHCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTTS---HHHHHCCHHH-CHHHHHHHTTTCC-HH-CHHH
T ss_pred ----HHHHHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHcc---HHHHHHHHHH-HHHHHHHHHccccchHHHHHH
Confidence 2258889999999999999 88899999999999998873 5666666665 59999999964 4555 7888
Q ss_pred HHHHHHH
Q 001833 699 AVKLFCC 705 (1008)
Q Consensus 699 a~~~L~~ 705 (1008)
|+-.|..
T Consensus 150 A~v~L~K 156 (157)
T PF11701_consen 150 AAVGLCK 156 (157)
T ss_dssp HHHHHHH
T ss_pred HHHHHhc
Confidence 8777764
No 251
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=88.03 E-value=42 Score=40.98 Aligned_cols=124 Identities=16% Similarity=0.266 Sum_probs=81.4
Q ss_pred hhcccchHHHHHHhcCCCC-------HHHHHHHHHHHhcCCCChhhHHHHHhcC--------CHHHHHHHhhCCCCCCCc
Q 001833 718 HVGQKCLETLVTIIQSSHN-------EEEIASAMGILSKLPEVPQFTQWLLDAG--------ALPIVLNFLKNGRQNDPN 782 (1008)
Q Consensus 718 ~~~~~~i~~Lv~lL~~~~~-------~~v~~~a~~~L~nL~~~~~~~~~l~~~g--------~l~~Lv~lL~~~~~~~~~ 782 (1008)
+.+.+++..++++...+.+ .+....|+++|.-+..-|.....+...- ++..|+..-.. ...-.
T Consensus 597 flkls~v~~~L~l~~~~~~w~~~spR~d~~~~Al~vL~i~t~iP~iq~~La~~~~~n~~aydGiaIiL~~a~g--~~~i~ 674 (1516)
T KOG1832|consen 597 FLKLSGVVTMLELCQTPPVWRYLSPRHDLLQYALGVLHIVTSIPDIQKALAHATLSNNRAYDGIAIILDAANG--SNSIV 674 (1516)
T ss_pred HHHhHHHHHHHHHHhcCccccccCcchHHHHHHHhheeeeEecchHHHHHHHHHhhcccccCceEEEeecccc--ccccc
Confidence 3556788888888876532 2455678888877766555555444321 22223222221 11114
Q ss_pred hhhHHHHHHHHHHHhcCCCCHH-----------------------------------HHHHHHHcCChHHHHHHhhcCCh
Q 001833 783 RFQVVENAVGALRRFTAPTNLE-----------------------------------WQKRAAEAGVIPKLVQLLEYGTT 827 (1008)
Q Consensus 783 ~~~v~~~a~~aL~~L~~~~~~~-----------------------------------~~~~l~~~g~l~~Lv~lL~~~~~ 827 (1008)
++.++..|+.+|.|+..+ .|+ ....+...++|..|+.||.-..|
T Consensus 675 Dpei~~~AL~vIincVc~-pp~~r~s~i~~v~S~~g~~r~~l~~~~ks~~le~~l~~mw~~Vr~ndGIkiLl~Ll~~k~P 753 (1516)
T KOG1832|consen 675 DPEIIQPALNVIINCVCP-PPTTRPSTIVAVGSQSGDRRIFLGAGTKSAKLEQVLRQMWEAVRGNDGIKILLKLLQYKNP 753 (1516)
T ss_pred CHHHHHHHHhhhheeecC-CCCcchhhhhhccccCCCccccccCCCchHHHHHHHHHHHHHHhcCccHHHHHHHHhccCC
Confidence 789999999999999875 211 12456678999999999985433
Q ss_pred -----HHHHHHHHHHhhhhhcC
Q 001833 828 -----LTKEHAATSLARFSKNS 844 (1008)
Q Consensus 828 -----~v~~~Aa~aL~nLs~~~ 844 (1008)
.+|..||.+|.-|+++.
T Consensus 754 ~t~aD~IRalAc~~L~GLaR~~ 775 (1516)
T KOG1832|consen 754 PTTADCIRALACRVLLGLARDD 775 (1516)
T ss_pred CCcHHHHHHHHHHHHhccccCc
Confidence 78999999999998654
No 252
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=87.99 E-value=0.39 Score=49.59 Aligned_cols=48 Identities=19% Similarity=0.275 Sum_probs=40.9
Q ss_pred ccccccccccccCCceecc-CcccccHHHHHHHHh-cCCCCCCCcCccCC
Q 001833 264 QSFYCPITRDVMVDPVETS-SGQTFERSAIEKWFS-DGNNLCPLTMTVLD 311 (1008)
Q Consensus 264 ~~~~cpi~~~~m~dpv~~~-~g~t~~r~~i~~w~~-~~~~~cp~~~~~l~ 311 (1008)
.+-.||+|++.=.-|.++. |||.||--||..-+. ....+||.|+++..
T Consensus 238 ~~~~C~~Cg~~PtiP~~~~~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~ 287 (298)
T KOG2879|consen 238 SDTECPVCGEPPTIPHVIGKCGHIYCYYCIATSRLWDASFTCPLCGENVE 287 (298)
T ss_pred CCceeeccCCCCCCCeeeccccceeehhhhhhhhcchhhcccCccCCCCc
Confidence 5679999999999999986 999999999998654 34568999988765
No 253
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]
Probab=87.82 E-value=6.3 Score=45.15 Aligned_cols=155 Identities=15% Similarity=0.222 Sum_probs=108.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHcCChhhHHHHhhcCcHHHHHHHhccCCH----HHHHHHHHHHHHhhCCCchhHH
Q 001833 504 FKHLLQRLSAGPESVKMRMATTLAEMELTDHHKASLLEGNVLGPLLHLVSRGDI----QMKKVAVKALRNLSSVPQNGLQ 579 (1008)
Q Consensus 504 v~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~----~~~~~A~~aL~~L~~~~~~~~~ 579 (1008)
...+++++.+|+...+..+...|..++........+....++..|..++.+++. .....++.++..+-.+.-....
T Consensus 85 a~~i~e~l~~~~~~~~~~a~k~l~sls~d~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgvvsW~ 164 (713)
T KOG2999|consen 85 AKRIMEILTEGNNISKMEALKELDSLSLDPTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGVVSWE 164 (713)
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhceeeee
Confidence 345678889999999988999999999888888888888999999999998854 3444445555444332222222
Q ss_pred HHhcCChHHHHHHhcccCCCCcchHHHHHHHHHHHhccccccccCCcccccccchhHHHHHHHhhccCChHHHHHHHHHH
Q 001833 580 MIKEGAVGPLVDLLLHHSSSSSSLREETATAIMHLAVSTMYQESSQTPVTLLESDKEIFMLFSLINLTGPNVQQRILQTF 659 (1008)
Q Consensus 580 i~~~G~v~~Ll~ll~~~~~~~~~~~~~a~~~L~nLa~~~~~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~aL 659 (1008)
.+....|.....+...... ...+-..|+..|-++..++..... .+.++--+..++..+...+..++..|+..+
T Consensus 165 ~~~~~fV~~~a~~V~~~~~-~a~~~~~AL~~LE~~vl~s~~~~~------~v~eev~i~~li~hlq~~n~~i~~~aial~ 237 (713)
T KOG2999|consen 165 SVSNDFVVSMASYVNAKRE-DANTLLAALQMLESLVLGSDTLRQ------LVAEEVPIETLIRHLQVSNQRIQTCAIALL 237 (713)
T ss_pred ecccHHHHHHHHHHhhhhh-cccchHHHHHHHHHHHhCChHHHH------HHHhcCcHHHHHHHHHhcchHHHHHHHHHH
Confidence 2233334444455532222 256788899999999887664443 666777889999999988988888888777
Q ss_pred HHhccC
Q 001833 660 NALCRS 665 (1008)
Q Consensus 660 ~~L~~~ 665 (1008)
-.+...
T Consensus 238 nal~~~ 243 (713)
T KOG2999|consen 238 NALFRK 243 (713)
T ss_pred HHHHhh
Confidence 777654
No 254
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=87.50 E-value=3.6 Score=41.63 Aligned_cols=125 Identities=15% Similarity=0.234 Sum_probs=80.2
Q ss_pred CChhHHHHHHHHHHHhccCCChhH-HHhh-h------------cccchHHHHHHhcCC-----CCHHHHHHHHHHHhcCC
Q 001833 691 DNENVRANAVKLFCCLVDDGDEAI-IREH-V------------GQKCLETLVTIIQSS-----HNEEEIASAMGILSKLP 751 (1008)
Q Consensus 691 ~~~~v~~~a~~~L~~Ls~~~~~~~-~~~~-~------------~~~~i~~Lv~lL~~~-----~~~~v~~~a~~~L~nL~ 751 (1008)
++...-..++.+|+||++...... +... . +...+..|++.+..+ ....-....+.+|+|++
T Consensus 7 ~~~~~adl~~MLLsNlT~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~NlS 86 (192)
T PF04063_consen 7 PKSPLADLACMLLSNLTRSDSGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLANLS 86 (192)
T ss_pred CCcchHHHHHHHHHHhccchHHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHhc
Confidence 344455567788888874322211 1111 1 124688888887762 22234567888999999
Q ss_pred CChhhHHHHHhcC--C--HHHHHHHhhCCCCCCCchhhHHHHHHHHHHHhcCCCCHHHHHHHHH---cCChHHHHHHhh
Q 001833 752 EVPQFTQWLLDAG--A--LPIVLNFLKNGRQNDPNRFQVVENAVGALRRFTAPTNLEWQKRAAE---AGVIPKLVQLLE 823 (1008)
Q Consensus 752 ~~~~~~~~l~~~g--~--l~~Lv~lL~~~~~~~~~~~~v~~~a~~aL~~L~~~~~~~~~~~l~~---~g~l~~Lv~lL~ 823 (1008)
..++.+..+.+.. . +..|+.++.+ .+.--|..++++|.|++.. .+.-..+.. .+++|.|+--|.
T Consensus 87 ~~~~gR~~~l~~~~~~~~l~kLl~ft~~------~s~iRR~Gva~~IrNccFd--~~~H~~LL~~~~~~iLp~LLlPLa 157 (192)
T PF04063_consen 87 QLPEGRQFFLDPQRYDGPLQKLLPFTEH------KSVIRRGGVAGTIRNCCFD--TDSHEWLLSDDEVDILPYLLLPLA 157 (192)
T ss_pred CCHHHHHHHhCchhhhhHHHHHHHHhcc------CcHHHHHHHHHHHHHhhcc--HhHHHHhcCchhhhhHHHHHhhcc
Confidence 9999999998754 3 5667777766 4556678999999999995 444344443 356666655554
No 255
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.48 E-value=12 Score=45.50 Aligned_cols=187 Identities=17% Similarity=0.187 Sum_probs=120.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHcCChhhHHHHhhcCcHHHHHHHhccCCHHHHHHHHHHHHHhhCCCchhHHHHhcCCh
Q 001833 507 LLQRLSAGPESVKMRMATTLAEMELTDHHKASLLEGNVLGPLLHLVSRGDIQMKKVAVKALRNLSSVPQNGLQMIKEGAV 586 (1008)
Q Consensus 507 Lv~~L~~~~~~~~~~aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~~~~~~~i~~~G~v 586 (1008)
-+..+.++-..+|..++..|..+......+..+...+++...++.|++.++.+--+|...+..||. +....++
T Consensus 732 ai~sl~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lce-------vy~e~il 804 (982)
T KOG4653|consen 732 AISSLHDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCE-------VYPEDIL 804 (982)
T ss_pred HHHHhcCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHH-------hcchhhH
Confidence 344455566678889999999887766666667778899999999999999999999998888885 2344577
Q ss_pred HHHHHHhcccCCC-CcchHHHHHHHHHHHhccccccccCCccccccc--chhHHHHHHHhhccCChHHHHHHHHHHHHhc
Q 001833 587 GPLVDLLLHHSSS-SSSLREETATAIMHLAVSTMYQESSQTPVTLLE--SDKEIFMLFSLINLTGPNVQQRILQTFNALC 663 (1008)
Q Consensus 587 ~~Ll~ll~~~~~~-~~~~~~~a~~~L~nLa~~~~~~~~~~~~~~~l~--~~~~i~~L~~ll~~~~~~v~~~al~aL~~L~ 663 (1008)
|-+.+.-.+.+.. .++.+-..-.++.+++..-.. +.. .+-.+..++..++.++...|.+.+..|.+||
T Consensus 805 ~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Ge---------l~~~y~~~Li~tfl~gvrepd~~~RaSS~a~lg~Lc 875 (982)
T KOG4653|consen 805 PDLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGE---------LVFKYKAVLINTFLSGVREPDHEFRASSLANLGQLC 875 (982)
T ss_pred HHHHHHHHhcccCCCccceehHHHHHHHHHHHhcc---------HHHHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHHH
Confidence 7777744332221 123333444566665541100 000 1234566777777666677999999999998
Q ss_pred cCCChhhHHHHhhhcCChHHHHHhhccC-ChhHHHHHHHHHHHhccCCChh
Q 001833 664 RSPSAGNIKTTLTQCSAIPVLVQLCEHD-NENVRANAVKLFCCLVDDGDEA 713 (1008)
Q Consensus 664 ~~~~~~~~~~~i~e~~~i~~Lv~ll~~~-~~~v~~~a~~~L~~Ls~~~~~~ 713 (1008)
.-... .+.+.+.+ .+..++.+.+.+ ..-+|++|+..+..+- .+.+.
T Consensus 876 q~~a~-~vsd~~~e--v~~~Il~l~~~d~s~~vRRaAv~li~~lL-~~tg~ 922 (982)
T KOG4653|consen 876 QLLAF-QVSDFFHE--VLQLILSLETTDGSVLVRRAAVHLLAELL-NGTGE 922 (982)
T ss_pred HHHhh-hhhHHHHH--HHHHHHHHHccCCchhhHHHHHHHHHHHH-hccch
Confidence 74211 11223443 244555555544 6788999999998886 54443
No 256
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=87.39 E-value=26 Score=39.75 Aligned_cols=143 Identities=19% Similarity=0.233 Sum_probs=92.6
Q ss_pred cHHHHHHHhcc-CCHHHHHHHHHHHHHhhCCCchhHHHHhc--CChHHHHHHhcccCCCCcchHHHHH-HHHHHHhcccc
Q 001833 544 VLGPLLHLVSR-GDIQMKKVAVKALRNLSSVPQNGLQMIKE--GAVGPLVDLLLHHSSSSSSLREETA-TAIMHLAVSTM 619 (1008)
Q Consensus 544 ~i~~Lv~lL~~-~~~~~~~~A~~aL~~L~~~~~~~~~i~~~--G~v~~Ll~ll~~~~~~~~~~~~~a~-~~L~nLa~~~~ 619 (1008)
++..+++.|++ .+...++.|+..|..+|.+... ++.+. -+|..+++.-.+.. +.+...|. .++.-++....
T Consensus 330 iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~--~l~DstE~ai~K~Leaa~ds~---~~v~~~Aeed~~~~las~~P 404 (516)
T KOG2956|consen 330 ILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPA--RLFDSTEIAICKVLEAAKDSQ---DEVMRVAEEDCLTTLASHLP 404 (516)
T ss_pred HHHHHHHHHccchhhHHHHHHHHHHHHHHHhchH--hhhchHHHHHHHHHHHHhCCc---hhHHHHHHHHHHHHHHhhCc
Confidence 45677888887 6888999999999999974432 22221 12334444443333 23333333 44444443222
Q ss_pred ccccCCcccccccchhHHHHHHHhhccCChHHHHHHHHHHHHhccCCChhhHHHHhhhcCChHHHHHhhccCChhHHHHH
Q 001833 620 YQESSQTPVTLLESDKEIFMLFSLINLTGPNVQQRILQTFNALCRSPSAGNIKTTLTQCSAIPVLVQLCEHDNENVRANA 699 (1008)
Q Consensus 620 ~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~aL~~L~~~~~~~~~~~~i~e~~~i~~Lv~ll~~~~~~v~~~a 699 (1008)
...|..+..++-..+...-..++..+..++..-..++.-..+- ++.|.+++-..+.+..+|..|
T Consensus 405 --------------~~~I~~i~~~Ilt~D~~~~~~~iKm~Tkl~e~l~~EeL~~ll~--diaP~~iqay~S~SS~VRKta 468 (516)
T KOG2956|consen 405 --------------LQCIVNISPLILTADEPRAVAVIKMLTKLFERLSAEELLNLLP--DIAPCVIQAYDSTSSTVRKTA 468 (516)
T ss_pred --------------hhHHHHHhhHHhcCcchHHHHHHHHHHHHHhhcCHHHHHHhhh--hhhhHHHHHhcCchHHhhhhH
Confidence 2345566666666677777778878888877644455444443 478999999999999999999
Q ss_pred HHHHHHhc
Q 001833 700 VKLFCCLV 707 (1008)
Q Consensus 700 ~~~L~~Ls 707 (1008)
+.+|..+.
T Consensus 469 VfCLVamv 476 (516)
T KOG2956|consen 469 VFCLVAMV 476 (516)
T ss_pred HHhHHHHH
Confidence 99998876
No 257
>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D. melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.
Probab=87.27 E-value=32 Score=38.88 Aligned_cols=91 Identities=19% Similarity=0.161 Sum_probs=60.1
Q ss_pred HHHHHHHHhcC-CHHHHHHHHHHHHHHcCChhhHHHHhhcCcHHHHHHHhccC-CH-HHHHHHHHHHHHhhCCCchhHHH
Q 001833 504 FKHLLQRLSAG-PESVKMRMATTLAEMELTDHHKASLLEGNVLGPLLHLVSRG-DI-QMKKVAVKALRNLSSVPQNGLQM 580 (1008)
Q Consensus 504 v~~Lv~~L~~~-~~~~~~~aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~-~~-~~~~~A~~aL~~L~~~~~~~~~i 580 (1008)
|..+++-+..+ +..+|..++.-|+.-..+++.+..+..+|.+..+++.+.+. +. ...-.++.+++-++.+..+-..+
T Consensus 23 v~ylld~l~~~~~~s~Rr~sll~La~K~~~~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~~~~~l~ 102 (361)
T PF07814_consen 23 VEYLLDGLESSSSSSVRRSSLLELASKCADPQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRDGLNMHLL 102 (361)
T ss_pred HHHHHhhcccCCCccHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccCCcchhhh
Confidence 44455555532 45678888888888888999999999999999999999543 33 33333444444455544444444
Q ss_pred HhcCChHHHHHHhc
Q 001833 581 IKEGAVGPLVDLLL 594 (1008)
Q Consensus 581 ~~~G~v~~Ll~ll~ 594 (1008)
.+.+....++.++.
T Consensus 103 ~~~~~~~ll~~Ll~ 116 (361)
T PF07814_consen 103 LDRDSLRLLLKLLK 116 (361)
T ss_pred hchhHHHHHHHHhc
Confidence 45566666677777
No 258
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=87.10 E-value=2.8 Score=34.91 Aligned_cols=67 Identities=13% Similarity=0.133 Sum_probs=57.6
Q ss_pred HHHHHHHHhcCCCChhhHHHHHhcCCHHHHHHHhhCCCCCCCchhhHHHHHHHHHHHhcCCCCHHHHHHHHHcC
Q 001833 740 IASAMGILSKLPEVPQFTQWLLDAGALPIVLNFLKNGRQNDPNRFQVVENAVGALRRFTAPTNLEWQKRAAEAG 813 (1008)
Q Consensus 740 ~~~a~~~L~nL~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~v~~~a~~aL~~L~~~~~~~~~~~l~~~g 813 (1008)
..+|+++++++..++.....+.+.++++.++++.... +...+|-.+..+|+-++. +.+..+.+.+.|
T Consensus 4 lKaaLWaighIgss~~G~~lL~~~~iv~~iv~~a~~s-----~v~siRGT~fy~Lglis~--T~~G~~~L~~~g 70 (73)
T PF14668_consen 4 LKAALWAIGHIGSSPLGIQLLDESDIVEDIVKIAENS-----PVLSIRGTCFYVLGLISS--TEEGAEILDELG 70 (73)
T ss_pred HHHHHHHHHhHhcChHHHHHHhhcCHHHHHHHHHHhC-----CccchHHHHHHHHHHHhC--CHHHHHHHHHcC
Confidence 4679999999999888888888899999999999984 467899999999999998 688877777665
No 259
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=86.63 E-value=0.36 Score=53.23 Aligned_cols=47 Identities=19% Similarity=0.412 Sum_probs=37.6
Q ss_pred CCccccccccccccCCce----eccCcccccHHHHHHHHhcCCCCCCCcCccCC
Q 001833 262 PLQSFYCPITRDVMVDPV----ETSSGQTFERSAIEKWFSDGNNLCPLTMTVLD 311 (1008)
Q Consensus 262 ~~~~~~cpi~~~~m~dpv----~~~~g~t~~r~~i~~w~~~~~~~cp~~~~~l~ 311 (1008)
+-+-..||+|+|-|-+-| ++.|-|+|--.|+.+|++ .+||+||--.+
T Consensus 172 ~tELPTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w~~---~scpvcR~~q~ 222 (493)
T KOG0804|consen 172 LTELPTCPVCLERMDSSTTGILTILCNHSFHCSCLMKWWD---SSCPVCRYCQS 222 (493)
T ss_pred cccCCCcchhHhhcCccccceeeeecccccchHHHhhccc---CcChhhhhhcC
Confidence 335569999999998765 467999999999999984 47999875444
No 260
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=86.01 E-value=29 Score=42.57 Aligned_cols=222 Identities=14% Similarity=0.153 Sum_probs=142.8
Q ss_pred hccCChhHHHHHHHHHHHhccC--CChhHHHhhhcccchHHHHHHhcCCCCHHHHHHHHHHHhcCCCChhhHHHHHhcCC
Q 001833 688 CEHDNENVRANAVKLFCCLVDD--GDEAIIREHVGQKCLETLVTIIQSSHNEEEIASAMGILSKLPEVPQFTQWLLDAGA 765 (1008)
Q Consensus 688 l~~~~~~v~~~a~~~L~~Ls~~--~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~v~~~a~~~L~nL~~~~~~~~~l~~~g~ 765 (1008)
..+..|.....+.+++...++. ..+... .-.+...+..+.-...+.++..|+++++.-++...... ...++
T Consensus 459 ~~~e~P~Ll~Ra~~~i~~fs~~~~~~~~~~-----~~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~~~~vl~~--~~p~i 531 (1005)
T KOG2274|consen 459 VYQESPFLLLRAFLTISKFSSSTVINPQLL-----QHFLNATVNALTMDVPPPVKISAVRAFCGYCKVKVLLS--LQPMI 531 (1005)
T ss_pred ccccCHHHHHHHHHHHHHHHhhhccchhHH-----HHHHHHHHHhhccCCCCchhHHHHHHHHhccCceeccc--cchHH
Confidence 3445677777888888877632 111111 12344555666555555678888888887774211111 13456
Q ss_pred HHHHHHHhhCCCCCCCchhhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHHHhh--cCChHHHHHHHHHHhhhhhc
Q 001833 766 LPIVLNFLKNGRQNDPNRFQVVENAVGALRRFTAPTNLEWQKRAAEAGVIPKLVQLLE--YGTTLTKEHAATSLARFSKN 843 (1008)
Q Consensus 766 l~~Lv~lL~~~~~~~~~~~~v~~~a~~aL~~L~~~~~~~~~~~l~~~g~l~~Lv~lL~--~~~~~v~~~Aa~aL~nLs~~ 843 (1008)
+..|.++... .+.++....+.+|+..+.- +|+.. ...+..+.|.++.++. +.+|.+...+--++..++..
T Consensus 532 ld~L~qlas~------~s~evl~llmE~Ls~vv~~-dpef~-as~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~ 603 (1005)
T KOG2274|consen 532 LDGLLQLASK------SSDEVLVLLMEALSSVVKL-DPEFA-ASMESKICPLTINLFLKYSEDPQVASLAQDLFEELLQI 603 (1005)
T ss_pred HHHHHHHccc------ccHHHHHHHHHHHHHHhcc-Chhhh-hhhhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHH
Confidence 6677777766 5677888888899888876 67654 4456778888888775 45777777777777777642
Q ss_pred CCCCCCCCCCCCcccccCCCCCCcccccCcccCcccchhHhhccchHHHHHhhcCCC----hhhhHHHHHHHHhhh-ccc
Q 001833 844 SLGLSRPIPKRKGFWCFSPPPEIGCQVHGGLCGIESSFCLLEANAVRPLVRVLEDPD----HGACEASLDALVTLI-EGE 918 (1008)
Q Consensus 844 ~~~l~~~~~~~~g~~~~~~~~~~~c~vh~~~c~~~~~~~l~~~g~i~~Lv~lL~~~d----~~v~~~al~aL~~L~-~~~ 918 (1008)
... . | -.....|+.|++.|..++ +..+..|+..|.+++ ...
T Consensus 604 ~~~-------~-g--------------------------~m~e~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp 649 (1005)
T KOG2274|consen 604 AAN-------Y-G--------------------------PMQERLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTP 649 (1005)
T ss_pred HHh-------h-c--------------------------chHHHHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCC
Confidence 211 0 0 022346899999998665 568888999999998 332
Q ss_pred ccchhhHHHHhcCchHHHHHHh-cCCChHHHHHHHHHHHHHhcC
Q 001833 919 RLQNGSKVLEDANAIDRMVRFL-SSPSPKLQEKALDSVERIFRL 961 (1008)
Q Consensus 919 ~~~~~~~~i~~~~~i~~l~~ll-~~~~~~l~~~a~~~L~~l~~~ 961 (1008)
. +... ..-.-+++++.++. ++.+.+..+.+..+|..+...
T Consensus 650 ~--pL~~-~l~~~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is~ 690 (1005)
T KOG2274|consen 650 S--PLPN-LLICYAFPAVAKITLHSDDHETLQNATECLRALISV 690 (1005)
T ss_pred C--CccH-HHHHHHhHHhHhheeecCChHHHHhHHHHHHHHHhc
Confidence 1 2222 22334577888876 667788888999998877554
No 261
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=85.97 E-value=0.32 Score=52.88 Aligned_cols=59 Identities=31% Similarity=0.548 Sum_probs=47.2
Q ss_pred ccccccccccCCc-----eeccCcccccHHHHHHHHhc-CCCCCCCcCccCCCCCCccCHhhHHH
Q 001833 266 FYCPITRDVMVDP-----VETSSGQTFERSAIEKWFSD-GNNLCPLTMTVLDTSILRPNKTLRQS 324 (1008)
Q Consensus 266 ~~cpi~~~~m~dp-----v~~~~g~t~~r~~i~~w~~~-~~~~cp~~~~~l~~~~l~pN~~l~~~ 324 (1008)
-.||||++-..-| |++.|||-|--.||++|+.+ ....||.|.-+-....+.|.+++|..
T Consensus 5 ~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~k~~~~~cp~c~~katkr~i~~e~alR~q 69 (463)
T KOG1645|consen 5 TTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLGKKTKMQCPLCSGKATKRQIRPEYALRVQ 69 (463)
T ss_pred ccCceeeeeeeecCceEEeeecccccccHHHHHHHHhhhhhhhCcccCChhHHHHHHHHHHHHHH
Confidence 4799999887755 56789999999999999952 24569999888777888888877743
No 262
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=85.15 E-value=7.5 Score=45.77 Aligned_cols=90 Identities=19% Similarity=0.202 Sum_probs=65.6
Q ss_pred hhhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHHHhhcCChHHHHHHHHHHhhhhhcCCCCCCCCCCCCcccccCC
Q 001833 783 RFQVVENAVGALRRFTAPTNLEWQKRAAEAGVIPKLVQLLEYGTTLTKEHAATSLARFSKNSLGLSRPIPKRKGFWCFSP 862 (1008)
Q Consensus 783 ~~~v~~~a~~aL~~L~~~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~v~~~Aa~aL~nLs~~~~~l~~~~~~~~g~~~~~~ 862 (1008)
+...+.-|+..+.++... -|+.+... +..+++|..+.+..+|..|...|-.++..++.
T Consensus 35 ~~k~K~Laaq~I~kffk~-FP~l~~~A-----i~a~~DLcEDed~~iR~~aik~lp~~ck~~~~---------------- 92 (556)
T PF05918_consen 35 SPKEKRLAAQFIPKFFKH-FPDLQEEA-----INAQLDLCEDEDVQIRKQAIKGLPQLCKDNPE---------------- 92 (556)
T ss_dssp -HHHHHHHHHHHHHHHCC--GGGHHHH-----HHHHHHHHT-SSHHHHHHHHHHGGGG--T--T----------------
T ss_pred CHHHHHHHHHHHHHHHhh-ChhhHHHH-----HHHHHHHHhcccHHHHHHHHHhHHHHHHhHHH----------------
Confidence 466888899999999887 67777554 66799999999999999999999999965432
Q ss_pred CCCCcccccCcccCcccchhHhhccchHHHHHhhcCCChhhhHHHHHHHHhhh
Q 001833 863 PPEIGCQVHGGLCGIESSFCLLEANAVRPLVRVLEDPDHGACEASLDALVTLI 915 (1008)
Q Consensus 863 ~~~~~c~vh~~~c~~~~~~~l~~~g~i~~Lv~lL~~~d~~v~~~al~aL~~L~ 915 (1008)
.-..++..|+++|...++.-...+-.+|..|+
T Consensus 93 ---------------------~v~kvaDvL~QlL~tdd~~E~~~v~~sL~~ll 124 (556)
T PF05918_consen 93 ---------------------HVSKVADVLVQLLQTDDPVELDAVKNSLMSLL 124 (556)
T ss_dssp ----------------------HHHHHHHHHHHTT---HHHHHHHHHHHHHHH
T ss_pred ---------------------HHhHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 11246788999999888888888888888888
No 263
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=85.12 E-value=0.8 Score=49.12 Aligned_cols=47 Identities=19% Similarity=0.461 Sum_probs=38.1
Q ss_pred ccccccccccccCC-------------ceeccCcccccHHHHHHHHhcCCCCCCCcCccCC
Q 001833 264 QSFYCPITRDVMVD-------------PVETSSGQTFERSAIEKWFSDGNNLCPLTMTVLD 311 (1008)
Q Consensus 264 ~~~~cpi~~~~m~d-------------pv~~~~g~t~~r~~i~~w~~~~~~~cp~~~~~l~ 311 (1008)
.|-.|-||.+-|-+ |=-++|||.+--+|.+.|+++. .|||.|+.|+-
T Consensus 286 ~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~ERq-QTCPICr~p~i 345 (491)
T COG5243 286 SDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLERQ-QTCPICRRPVI 345 (491)
T ss_pred CCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHHhc-cCCCcccCccc
Confidence 56678888877543 3578999999999999999874 57999998853
No 264
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=85.02 E-value=28 Score=39.59 Aligned_cols=123 Identities=16% Similarity=0.228 Sum_probs=93.1
Q ss_pred HHHHHHHhcc--CCChhHHHhhhc-ccchHHHHHHhcCCC--CHHHHHHHHHHHhcCCC-ChhhHHHHHhcCCHHHHHHH
Q 001833 699 AVKLFCCLVD--DGDEAIIREHVG-QKCLETLVTIIQSSH--NEEEIASAMGILSKLPE-VPQFTQWLLDAGALPIVLNF 772 (1008)
Q Consensus 699 a~~~L~~Ls~--~~~~~~~~~~~~-~~~i~~Lv~lL~~~~--~~~v~~~a~~~L~nL~~-~~~~~~~l~~~g~l~~Lv~l 772 (1008)
.++++..+.. .+..+..+.+++ ...+..|..++.+.. ...+...|+.++..+.. +|..-..+.+.|.++.+++.
T Consensus 80 lLk~l~~~~~~~~~~~~~lrnl~D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L~~ 159 (379)
T PF06025_consen 80 LLKFLSHAMQHSGGFGDRLRNLIDSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAFLDA 159 (379)
T ss_pred HHHHHHHHhccCCCcccccccccchhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHHHHH
Confidence 3445555553 344556666667 455667777777763 34678888999999888 88888889999999999999
Q ss_pred hh-CCCCCCCchhhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHHHhhcCC
Q 001833 773 LK-NGRQNDPNRFQVVENAVGALRRFTAPTNLEWQKRAAEAGVIPKLVQLLEYGT 826 (1008)
Q Consensus 773 L~-~~~~~~~~~~~v~~~a~~aL~~L~~~~~~~~~~~l~~~g~l~~Lv~lL~~~~ 826 (1008)
+. .+.. +..++.-..-.+|..||- +....+.+.+.+.++.+++++.+.+
T Consensus 160 i~~~~i~---~s~e~l~~lP~~l~AicL--N~~Gl~~~~~~~~l~~~f~if~s~~ 209 (379)
T PF06025_consen 160 ITAKGIL---PSSEVLTSLPNVLSAICL--NNRGLEKVKSSNPLDKLFEIFTSPD 209 (379)
T ss_pred HhccCCC---CcHHHHHHHHHHHhHHhc--CHHHHHHHHhcChHHHHHHHhCCHH
Confidence 98 4332 456777788888888888 7999999999999999999998653
No 265
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.84 E-value=48 Score=37.96 Aligned_cols=260 Identities=14% Similarity=0.069 Sum_probs=130.8
Q ss_pred hccCCHHHHHHHHHHHHHhhCC-CchhHHHHhcCChHHHHHHhcccCCCCcchHHHHHHHHHHHhccccccccCCccccc
Q 001833 552 VSRGDIQMKKVAVKALRNLSSV-PQNGLQMIKEGAVGPLVDLLLHHSSSSSSLREETATAIMHLAVSTMYQESSQTPVTL 630 (1008)
Q Consensus 552 L~~~~~~~~~~A~~aL~~L~~~-~~~~~~i~~~G~v~~Ll~ll~~~~~~~~~~~~~a~~~L~nLa~~~~~~~~~~~~~~~ 630 (1008)
..+++...+..|+..|.|.+.. |.-+.... .-.+..++.-|.++.. .+++-+++.+|..+........-.+ .
T Consensus 267 a~dp~a~~r~~a~r~L~~~as~~P~kv~th~-~~~ldaii~gL~D~~~--~~V~leam~~Lt~v~~~~~~~~l~~----~ 339 (533)
T KOG2032|consen 267 ATDPSAKSRGMACRGLGNTASGAPDKVRTHK-TTQLDAIIRGLYDDLN--EEVQLEAMKCLTMVLEKASNDDLES----Y 339 (533)
T ss_pred ccCchhHHHHHHHHHHHHHhccCcHHHHHhH-HHHHHHHHHHHhcCCc--cHHHHHHHHHHHHHHHhhhhcchhh----h
Confidence 3456778899999999999975 43332222 2345566666655443 5688899999888876443332200 1
Q ss_pred ccchhHHHHHHHhhccCChHHHHHHHHHHHHhccCCChhhHHHHhhh--cCChHHHHHhhccCChhHHHHHHHHHHHhcc
Q 001833 631 LESDKEIFMLFSLINLTGPNVQQRILQTFNALCRSPSAGNIKTTLTQ--CSAIPVLVQLCEHDNENVRANAVKLFCCLVD 708 (1008)
Q Consensus 631 l~~~~~i~~L~~ll~~~~~~v~~~al~aL~~L~~~~~~~~~~~~i~e--~~~i~~Lv~ll~~~~~~v~~~a~~~L~~Ls~ 708 (1008)
+ -+..-.+..+..+.+++.+..+...+..|+.... ...+..+.+ .+....|+-.+.+.++.+-. ||+.....+
T Consensus 340 ~--l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g-~~~e~~Fte~v~k~~~~lllhl~d~~p~va~-ACr~~~~~c- 414 (533)
T KOG2032|consen 340 L--LNIALRLRTLFDSEDDKMRAAAFVLFGALAKLAG-GGWEEFFTEQVKKRLAPLLLHLQDPNPYVAR-ACRSELRTC- 414 (533)
T ss_pred c--hhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcC-CCchhhhHHHHHhccccceeeeCCCChHHHH-HHHHHHHhc-
Confidence 1 1334456667778899999998887777765321 111222221 11233344445556665543 555555544
Q ss_pred CCChhHHHhhhcccchHHHHHHhcCCCCHHHHHHHHHHHhcCCC-ChhhHHHHHhcCCHHHHHHHhhCCCCCCCchhhHH
Q 001833 709 DGDEAIIREHVGQKCLETLVTIIQSSHNEEEIASAMGILSKLPE-VPQFTQWLLDAGALPIVLNFLKNGRQNDPNRFQVV 787 (1008)
Q Consensus 709 ~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~v~~~a~~~L~nL~~-~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~v~ 787 (1008)
. ++-..++. .+.++...+... ...+.---..--.|.. +++....+.. ....++.. .-+.++
T Consensus 415 ~-p~l~rke~--~~~~q~~ld~~~----~~~q~Fyn~~c~~L~~i~~d~l~~~~t-----~~~~~f~s------swe~vr 476 (533)
T KOG2032|consen 415 Y-PNLVRKEL--YHLFQESLDTDM----ARFQAFYNQWCIQLNHIHPDILMLLLT-----EDQHIFSS------SWEQVR 476 (533)
T ss_pred C-chhHHHHH--HHHHhhhhHHhH----HHHHHHHHHHHHHHhhhCHHHHHHHHH-----hchhheec------chHHHH
Confidence 1 11111111 111221111000 0000000000001111 2222222111 11222222 234566
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHHHhhcCChHHHHHHHHHHhhhh
Q 001833 788 ENAVGALRRFTAPTNLEWQKRAAEAGVIPKLVQLLEYGTTLTKEHAATSLARFS 841 (1008)
Q Consensus 788 ~~a~~aL~~L~~~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~v~~~Aa~aL~nLs 841 (1008)
+.+..--.++.....+..+....-..+...+-.+.+++-++++..|..|+..++
T Consensus 477 ~aavl~t~~~vd~l~~~~c~~~d~~qL~~~ls~l~~dp~pev~~~a~~al~~l~ 530 (533)
T KOG2032|consen 477 EAAVLKTTRSVDSLVRAACSSADGLQLRSSLSTLWRDPRPEVTDSARKALDLLS 530 (533)
T ss_pred HHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHccCCCchhHHHHHHHhhhHh
Confidence 666655555554333444444444445666777777888999999999998876
No 266
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=84.80 E-value=9.1 Score=37.53 Aligned_cols=148 Identities=15% Similarity=0.134 Sum_probs=92.2
Q ss_pred hHHHHHHhcccCCCCcchHHHHHHHHHHHhccccccccCCcccccccchhHHHH-HHHhhccCChHHHHHHHHHHHHhcc
Q 001833 586 VGPLVDLLLHHSSSSSSLREETATAIMHLAVSTMYQESSQTPVTLLESDKEIFM-LFSLINLTGPNVQQRILQTFNALCR 664 (1008)
Q Consensus 586 v~~Ll~ll~~~~~~~~~~~~~a~~~L~nLa~~~~~~~~~~~~~~~l~~~~~i~~-L~~ll~~~~~~v~~~al~aL~~L~~ 664 (1008)
+..++..+..-.. +++++..+.-++..+-. ..++. ..+.+.. +-..+...+.+-...++.++..+-.
T Consensus 5 l~~lL~~L~~~~~-~~~~r~~a~v~l~k~l~--~~~~~---------~~~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp 72 (157)
T PF11701_consen 5 LDTLLTSLDMLRQ-PEEVRSHALVILSKLLD--AAREE---------FKEKISDFIESLLDEGEMDSLIIAFSALTALFP 72 (157)
T ss_dssp CCHHHHHHHCTTT-SCCHHHHHHHHHHHHHH--HHHHH---------HHHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCT
T ss_pred HHHHHHHhcccCC-CHhHHHHHHHHHHHHHH--HhHHH---------HHHHHHHHHHHHHccccchhHHHHHHHHHHHhC
Confidence 3445555543111 15678888888877731 11110 1122222 2233333444455667777777765
Q ss_pred CCChhhHHHHhhhcCChHHHHHhhc--cCChhHHHHHHHHHHHhccCCChhHHHhhhcccchHHHHHHhcCCCCHH-HHH
Q 001833 665 SPSAGNIKTTLTQCSAIPVLVQLCE--HDNENVRANAVKLFCCLVDDGDEAIIREHVGQKCLETLVTIIQSSHNEE-EIA 741 (1008)
Q Consensus 665 ~~~~~~~~~~i~e~~~i~~Lv~ll~--~~~~~v~~~a~~~L~~Ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~-v~~ 741 (1008)
.+ +.-....+...|..+.++.++. ..+..++..++.+|..-+ .++..+..+...+++.|-++.+.++++. ++.
T Consensus 73 ~~-~dv~~~l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc---~d~~~r~~I~~~~~~~L~~~~~~~~~~~~ir~ 148 (157)
T PF11701_consen 73 GP-PDVGSELFLSEGFLESLLPLASRKSKDRKVQKAALELLSAAC---IDKSCRTFISKNYVSWLKELYKNSKDDSEIRV 148 (157)
T ss_dssp TT-HHHHHHHCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHT---TSHHHHHCCHHHCHHHHHHHTTTCC-HH-CHH
T ss_pred CC-HHHHHHHHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHH---ccHHHHHHHHHHHHHHHHHHHccccchHHHHH
Confidence 42 3444556667788999999999 778889999999887776 4566777777789999999997766655 677
Q ss_pred HHHHHHhc
Q 001833 742 SAMGILSK 749 (1008)
Q Consensus 742 ~a~~~L~n 749 (1008)
.|+-+|..
T Consensus 149 ~A~v~L~K 156 (157)
T PF11701_consen 149 LAAVGLCK 156 (157)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhc
Confidence 77666654
No 267
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=84.64 E-value=72 Score=39.48 Aligned_cols=196 Identities=16% Similarity=0.233 Sum_probs=112.5
Q ss_pred HHHHhccCCChhHHHhhhcccchHHHHHHhcCCCCHHHHHHHHHHHhcCCCChhhHHHHHhcCCH--HHHHHHhhCCCCC
Q 001833 702 LFCCLVDDGDEAIIREHVGQKCLETLVTIIQSSHNEEEIASAMGILSKLPEVPQFTQWLLDAGAL--PIVLNFLKNGRQN 779 (1008)
Q Consensus 702 ~L~~Ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~v~~~a~~~L~nL~~~~~~~~~l~~~g~l--~~Lv~lL~~~~~~ 779 (1008)
+|++++ ...++.+..+++.+++..+...+......+.+..+++.++|++.-.+..........+ ..+-.++..-
T Consensus 494 ~l~~~t-~~~~~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~~~~~~~~~~~~~~~~~~f~~~~~~w--- 569 (699)
T KOG3665|consen 494 ALWNIT-DENPETCKEFLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAEVLELRELLMIFEFIDFSVFKVLLNKW--- 569 (699)
T ss_pred HHHhhh-cCCHHHHHHHHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhc---
Confidence 788888 7788999999999999999999998777788999999999998722222111111111 1222233331
Q ss_pred CCchhhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHHHhhcCChHHHHHHHHHHhhhhhcCCCCCCCCCCCCcccc
Q 001833 780 DPNRFQVVENAVGALRRFTAPTNLEWQKRAAEAGVIPKLVQLLEYGTTLTKEHAATSLARFSKNSLGLSRPIPKRKGFWC 859 (1008)
Q Consensus 780 ~~~~~~v~~~a~~aL~~L~~~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~v~~~Aa~aL~nLs~~~~~l~~~~~~~~g~~~ 859 (1008)
...+.-..++.+|+.+...+++ . ...+.- +.+...-..+.........
T Consensus 570 --~~~ersY~~~siLa~ll~~~~~-~----~~~~~r-----------~~~~~~l~e~i~~~~~~~~-------------- 617 (699)
T KOG3665|consen 570 --DSIERSYNAASILALLLSDSEK-T----TECVFR-----------NSVNELLVEAISRWLTSEI-------------- 617 (699)
T ss_pred --chhhHHHHHHHHHHHHHhCCCc-C----ccccch-----------HHHHHHHHHHhhccCccce--------------
Confidence 1225566677777776664211 0 001111 1122222222222210000
Q ss_pred cCCCCCCcccccCcccCcccchhHhhccchHH-HHHhhc-CCChhhhHHHHHHHHhhhcccccchhhHHHHhcCchHHHH
Q 001833 860 FSPPPEIGCQVHGGLCGIESSFCLLEANAVRP-LVRVLE-DPDHGACEASLDALVTLIEGERLQNGSKVLEDANAIDRMV 937 (1008)
Q Consensus 860 ~~~~~~~~c~vh~~~c~~~~~~~l~~~g~i~~-Lv~lL~-~~d~~v~~~al~aL~~L~~~~~~~~~~~~i~~~~~i~~l~ 937 (1008)
. ..-...+.+ +..++. ...++.+..|++++.+++ .....+...+.+.|+++.+.
T Consensus 618 ----------------~------~~~~~~f~~~~~~il~~s~~~g~~lWal~ti~~~~--~~~~~~~~~~~~~~~~~~~~ 673 (699)
T KOG3665|consen 618 ----------------R------VINDRSFFPRILRILRLSKSDGSQLWALWTIKNVL--EQNKEYCKLVRESNGFELIE 673 (699)
T ss_pred ----------------e------ehhhhhcchhHHHHhcccCCCchHHHHHHHHHHHH--HcChhhhhhhHhccchhhhh
Confidence 0 011112333 555554 556778888999999998 22225788888999999988
Q ss_pred HHhcC-CChHHHHHHHHHHHH
Q 001833 938 RFLSS-PSPKLQEKALDSVER 957 (1008)
Q Consensus 938 ~ll~~-~~~~l~~~a~~~L~~ 957 (1008)
++-.. ....+++.+..++.+
T Consensus 674 ~~~~~~~~~~~~~~~~~~i~~ 694 (699)
T KOG3665|consen 674 NIRVLSEVVDVKEEAVLVIES 694 (699)
T ss_pred hcchhHHHHHHHHHHHHHhhc
Confidence 87632 245566666655544
No 268
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=84.46 E-value=89 Score=38.69 Aligned_cols=170 Identities=12% Similarity=0.104 Sum_probs=102.6
Q ss_pred HHHHhhC-CCchhHHHHhcCChHHHHHHhcccCCCCcchHHHHHHHHHHHhccccccccCCcccccccchhH-HHHHHHh
Q 001833 566 ALRNLSS-VPQNGLQMIKEGAVGPLVDLLLHHSSSSSSLREETATAIMHLAVSTMYQESSQTPVTLLESDKE-IFMLFSL 643 (1008)
Q Consensus 566 aL~~L~~-~~~~~~~i~~~G~v~~Ll~ll~~~~~~~~~~~~~a~~~L~nLa~~~~~~~~~~~~~~~l~~~~~-i~~L~~l 643 (1008)
+|+++.. .++++..+++.|++..+...+..-.. ..++..+...+.|++.....+.. ....... ...+-.+
T Consensus 494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~~--~~~~~~il~~l~n~~~~~~~~~~------~~~~~~~~~~~f~~~ 565 (699)
T KOG3665|consen 494 ALWNITDENPETCKEFLDNGGMKLLFKCLESFDN--EELHRKILGLLGNLAEVLELREL------LMIFEFIDFSVFKVL 565 (699)
T ss_pred HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhccc--hhHHHHHHHHHHHHHHHhhhhhh------hhHHHHHHHHHHHHH
Confidence 7888884 88999999999999999999986632 57899999999999986544432 1111111 1122223
Q ss_pred hccCCh-HHHHHHHHHHHHhccCCC---h----hhHHHHhhh--------------cCChHH-HHHhhcc-CChhHHHHH
Q 001833 644 INLTGP-NVQQRILQTFNALCRSPS---A----GNIKTTLTQ--------------CSAIPV-LVQLCEH-DNENVRANA 699 (1008)
Q Consensus 644 l~~~~~-~v~~~al~aL~~L~~~~~---~----~~~~~~i~e--------------~~~i~~-Lv~ll~~-~~~~v~~~a 699 (1008)
+...+. +.-..+...|..+..+.+ . +.+...+.+ ...... +..++.. ..+..+..|
T Consensus 566 ~~~w~~~ersY~~~siLa~ll~~~~~~~~~~~r~~~~~~l~e~i~~~~~~~~~~~~~~~f~~~~~~il~~s~~~g~~lWa 645 (699)
T KOG3665|consen 566 LNKWDSIERSYNAASILALLLSDSEKTTECVFRNSVNELLVEAISRWLTSEIRVINDRSFFPRILRILRLSKSDGSQLWA 645 (699)
T ss_pred HhhcchhhHHHHHHHHHHHHHhCCCcCccccchHHHHHHHHHHhhccCccceeehhhhhcchhHHHHhcccCCCchHHHH
Confidence 333333 555667777776665421 1 111111111 111222 3344443 367888999
Q ss_pred HHHHHHhccCCChhHHHhhhcccchHHHHHHhcCCCCHHHHHHHH
Q 001833 700 VKLFCCLVDDGDEAIIREHVGQKCLETLVTIIQSSHNEEEIASAM 744 (1008)
Q Consensus 700 ~~~L~~Ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~v~~~a~ 744 (1008)
.+++.++. ...++..+.+.+.++++.+.+.-......+++..+.
T Consensus 646 l~ti~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 689 (699)
T KOG3665|consen 646 LWTIKNVL-EQNKEYCKLVRESNGFELIENIRVLSEVVDVKEEAV 689 (699)
T ss_pred HHHHHHHH-HcChhhhhhhHhccchhhhhhcchhHHHHHHHHHHH
Confidence 99999998 444457777777788877766554433333333333
No 269
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=83.40 E-value=5.4 Score=40.32 Aligned_cols=143 Identities=18% Similarity=0.157 Sum_probs=98.2
Q ss_pred HHHHHHHHHhccCchhhHHhhcccchHHHHHHHhc-----CCChHHHHHHHHHHHhhcCCccc--HHHHHhcCcHHHHHH
Q 001833 437 KLAVALLLELSTCNTLRDQIGDVQGCILLLVTMAS-----SDDNQASRDAQELLENLSFSDDN--VVQMAKANYFKHLLQ 509 (1008)
Q Consensus 437 ~~A~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~-----~~~~~~~~~a~~aL~~Ls~~~~n--~~~i~~~g~v~~Lv~ 509 (1008)
-+|..+|--++++|+.+..+.+. -.--.|...|. +...-.+..++.++..|..+++. ...+....+||..++
T Consensus 118 cnaL~lLQclaShPetk~~Fl~A-hiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPLcLr 196 (315)
T COG5209 118 CNALNLLQCLASHPETKKVFLDA-HIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLCLR 196 (315)
T ss_pred HHHHHHHHHHhcCcchheeeeec-ccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHHHH
Confidence 46777777788888888888652 22112223332 22345677788888888765543 566778899999999
Q ss_pred HHhcCCHHHHHHHHHHHHHHcCChhhHHHHhhc--------CcHHHHH-HHhccCCHHHHHHHHHHHHHhhCCCchhHHH
Q 001833 510 RLSAGPESVKMRMATTLAEMELTDHHKASLLEG--------NVLGPLL-HLVSRGDIQMKKVAVKALRNLSSVPQNGLQM 580 (1008)
Q Consensus 510 ~L~~~~~~~~~~aa~~L~~Ls~~~~~k~~i~~~--------g~i~~Lv-~lL~~~~~~~~~~A~~aL~~L~~~~~~~~~i 580 (1008)
++..|++-.+.-++-++..+-.+|.+-..+-+. ..+..++ ++.+.++.+..+.++.+-..||..+..|..+
T Consensus 197 Ime~gSElSktvaifI~qkil~dDvGLqYiCqT~eRFyAv~~vln~mv~qlVs~~~~RLlKh~iRcYlRLsd~p~aR~lL 276 (315)
T COG5209 197 IMELGSELSKTVAIFIFQKILGDDVGLQYICQTFERFYAVNLVLNSMVSQLVSLGSTRLLKHAIRCYLRLSDKPHARALL 276 (315)
T ss_pred HHHhhhHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHheeecCCHhHHHHH
Confidence 999999888988999998887777655433221 1233333 3455677888899999988998877665543
No 270
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=83.17 E-value=26 Score=35.69 Aligned_cols=103 Identities=17% Similarity=0.242 Sum_probs=82.5
Q ss_pred HHHHHHHHHhcCCCChhhHHHHHhcCCHHHHHHHhhCCCCCCCchhhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHH
Q 001833 739 EIASAMGILSKLPEVPQFTQWLLDAGALPIVLNFLKNGRQNDPNRFQVVENAVGALRRFTAPTNLEWQKRAAEAGVIPKL 818 (1008)
Q Consensus 739 v~~~a~~~L~nL~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~v~~~a~~aL~~L~~~~~~~~~~~l~~~g~l~~L 818 (1008)
-...|+.+|-.++++|+.+...+++.+--.+..+|...++ ++.-+.+|-.++++++.+....++.....+...+++|.+
T Consensus 116 RvcnaL~lLQclaShPetk~~Fl~AhiplflypfLntss~-~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPLc 194 (315)
T COG5209 116 RVCNALNLLQCLASHPETKKVFLDAHIPLFLYPFLNTSSS-NSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLC 194 (315)
T ss_pred HHHHHHHHHHHHhcCcchheeeeecccceeeHhhhhcccc-CCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHH
Confidence 4456777888888889888888888866666666665332 225567899999999999998788889999999999999
Q ss_pred HHHhhcCChHHHHHHHHHHhhhhh
Q 001833 819 VQLLEYGTTLTKEHAATSLARFSK 842 (1008)
Q Consensus 819 v~lL~~~~~~v~~~Aa~aL~nLs~ 842 (1008)
.+++..|+.--+.-|+..+..+..
T Consensus 195 LrIme~gSElSktvaifI~qkil~ 218 (315)
T COG5209 195 LRIMELGSELSKTVAIFIFQKILG 218 (315)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHhc
Confidence 999999998888878777777663
No 271
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=83.06 E-value=30 Score=42.45 Aligned_cols=198 Identities=14% Similarity=0.121 Sum_probs=107.9
Q ss_pred CcHHHHHHHHhcCCHHHHHHHHHHHHHHcCCh--hhHHHHhhcCcHHHHHHHhcc----CCHHHHHHHHHHHHHhh----
Q 001833 502 NYFKHLLQRLSAGPESVKMRMATTLAEMELTD--HHKASLLEGNVLGPLLHLVSR----GDIQMKKVAVKALRNLS---- 571 (1008)
Q Consensus 502 g~v~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~~--~~k~~i~~~g~i~~Lv~lL~~----~~~~~~~~A~~aL~~L~---- 571 (1008)
.++..+.+++..+.... ..++..|..+.... .. ...+..+..++.. .++.++..|+-+++.|.
T Consensus 395 ~av~~i~~~I~~~~~~~-~ea~~~l~~l~~~~~~Pt------~e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c 467 (618)
T PF01347_consen 395 PAVKFIKDLIKSKKLTD-DEAAQLLASLPFHVRRPT------EELLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYC 467 (618)
T ss_dssp HHHHHHHHHHHTT-S-H-HHHHHHHHHHHHT-----------HHHHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCH-HHHHHHHHHHHhhcCCCC------HHHHHHHHHHHhCccccCChhHHHHHHHHHHHHhCcee
Confidence 34566667776653222 22444444442211 11 1234555566653 35677777887777775
Q ss_pred CCC------chhHHHHhcCChHHHHHHhccc-CCCCcchHHHHHHHHHHHhccccccccCCcccccccchhHHHHHHHhh
Q 001833 572 SVP------QNGLQMIKEGAVGPLVDLLLHH-SSSSSSLREETATAIMHLAVSTMYQESSQTPVTLLESDKEIFMLFSLI 644 (1008)
Q Consensus 572 ~~~------~~~~~i~~~G~v~~Ll~ll~~~-~~~~~~~~~~a~~~L~nLa~~~~~~~~~~~~~~~l~~~~~i~~L~~ll 644 (1008)
... ..+...+..-.++.+...+... +..+..-+..++.+|+|+.. ...++.+...+
T Consensus 468 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~-----------------~~~i~~l~~~i 530 (618)
T PF01347_consen 468 VNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGH-----------------PESIPVLLPYI 530 (618)
T ss_dssp TT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT------------------GGGHHHHHTTS
T ss_pred ecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCC-----------------chhhHHHHhHh
Confidence 221 1112223334677777777632 11123567788899999853 34677777777
Q ss_pred ccC---ChHHHHHHHHHHHHhccCCChhhHHHHhhhcCChHHHHHhhccC--ChhHHHHHHHHHHHhccCCChhHHHhhh
Q 001833 645 NLT---GPNVQQRILQTFNALCRSPSAGNIKTTLTQCSAIPVLVQLCEHD--NENVRANAVKLFCCLVDDGDEAIIREHV 719 (1008)
Q Consensus 645 ~~~---~~~v~~~al~aL~~L~~~~~~~~~~~~i~e~~~i~~Lv~ll~~~--~~~v~~~a~~~L~~Ls~~~~~~~~~~~~ 719 (1008)
... ...+|..|+++|..+... .+.. +.+.|+.++.+. +.++|.+|..+|..- ..+
T Consensus 531 ~~~~~~~~~~R~~Ai~Alr~~~~~-~~~~---------v~~~l~~I~~n~~e~~EvRiaA~~~lm~~--~P~-------- 590 (618)
T PF01347_consen 531 EGKEEVPHFIRVAAIQALRRLAKH-CPEK---------VREILLPIFMNTTEDPEVRIAAYLILMRC--NPS-------- 590 (618)
T ss_dssp TTSS-S-HHHHHHHHHTTTTGGGT--HHH---------HHHHHHHHHH-TTS-HHHHHHHHHHHHHT-------------
T ss_pred hhccccchHHHHHHHHHHHHHhhc-CcHH---------HHHHHHHHhcCCCCChhHHHHHHHHHHhc--CCC--------
Confidence 765 577889999999988553 2222 356777777765 678999887766554 222
Q ss_pred cccchHHHHHHhcCCCCHHHHHHHH
Q 001833 720 GQKCLETLVTIIQSSHNEEEIASAM 744 (1008)
Q Consensus 720 ~~~~i~~Lv~lL~~~~~~~v~~~a~ 744 (1008)
...+..+++.+...++.++.....
T Consensus 591 -~~~l~~i~~~l~~E~~~QV~sfv~ 614 (618)
T PF01347_consen 591 -PSVLQRIAQSLWNEPSNQVASFVY 614 (618)
T ss_dssp -HHHHHHHHHHHTT-S-HHHHHHHH
T ss_pred -HHHHHHHHHHHhhCchHHHHHHHH
Confidence 245667777787766655554443
No 272
>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D. melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.
Probab=82.96 E-value=65 Score=36.45 Aligned_cols=91 Identities=19% Similarity=0.185 Sum_probs=59.7
Q ss_pred HHHHHHHhc-CCChHHHHHHHHHHHhhcCCcccHHHHHhcCcHHHHHHHHhcCCHH-HHHHHHH-HHHHHcCChhhHHHH
Q 001833 463 ILLLVTMAS-SDDNQASRDAQELLENLSFSDDNVVQMAKANYFKHLLQRLSAGPES-VKMRMAT-TLAEMELTDHHKASL 539 (1008)
Q Consensus 463 i~~Lv~lL~-~~~~~~~~~a~~aL~~Ls~~~~n~~~i~~~g~v~~Lv~~L~~~~~~-~~~~aa~-~L~~Ls~~~~~k~~i 539 (1008)
+..+++=+. +....++..++.-|..-+.+++.+..+...|.+..+++.+.....+ ....++. +++-++.....-..+
T Consensus 23 v~ylld~l~~~~~~s~Rr~sll~La~K~~~~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~~~~~l~ 102 (361)
T PF07814_consen 23 VEYLLDGLESSSSSSVRRSSLLELASKCADPQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRDGLNMHLL 102 (361)
T ss_pred HHHHHhhcccCCCccHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccCCcchhhh
Confidence 444555455 3355778888888888899999999999999999999998544333 4444444 444444433333333
Q ss_pred hhcCcHHHHHHHhc
Q 001833 540 LEGNVLGPLLHLVS 553 (1008)
Q Consensus 540 ~~~g~i~~Lv~lL~ 553 (1008)
-+.+....++.++.
T Consensus 103 ~~~~~~~ll~~Ll~ 116 (361)
T PF07814_consen 103 LDRDSLRLLLKLLK 116 (361)
T ss_pred hchhHHHHHHHHhc
Confidence 34555666677776
No 273
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=82.02 E-value=6.4 Score=45.16 Aligned_cols=132 Identities=17% Similarity=0.092 Sum_probs=94.9
Q ss_pred HHHHhhccCChhHHHHHHHHHHHhccCCChhHHHhhhcccchHHHHHHhcCCCCHHHHHHHHHHHhcCCCChhhHHHHHh
Q 001833 683 VLVQLCEHDNENVRANAVKLFCCLVDDGDEAIIREHVGQKCLETLVTIIQSSHNEEEIASAMGILSKLPEVPQFTQWLLD 762 (1008)
Q Consensus 683 ~Lv~ll~~~~~~v~~~a~~~L~~Ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~v~~~a~~~L~nL~~~~~~~~~l~~ 762 (1008)
.+-+++.+.++-+|.+.+..+..-- .+. ...+++..|+..--+..+++++.+|+.+|+-++.. +
T Consensus 520 ~I~ell~d~ds~lRy~G~fs~alAy-~GT-------gn~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~--------D 583 (926)
T COG5116 520 YINELLYDKDSILRYNGVFSLALAY-VGT-------GNLGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCD--------D 583 (926)
T ss_pred HHHHHhcCchHHhhhccHHHHHHHH-hcC-------CcchhHhhhheeecccCchHHHHHHHHheeeeEec--------C
Confidence 4556777777777777666553321 121 13467788887755556778999999999998863 2
Q ss_pred cCCHHHHHHHhhCCCCCCCchhhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHHHhhcCChHHHHHHHHHHhhhhh
Q 001833 763 AGALPIVLNFLKNGRQNDPNRFQVVENAVGALRRFTAPTNLEWQKRAAEAGVIPKLVQLLEYGTTLTKEHAATSLARFSK 842 (1008)
Q Consensus 763 ~g~l~~Lv~lL~~~~~~~~~~~~v~~~a~~aL~~L~~~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~v~~~Aa~aL~nLs~ 842 (1008)
...++..+++|... ++..+|...+-+|+-.+.+..... ++..|-.+..+.+..||+.|+.+++.+..
T Consensus 584 ~~~lv~tvelLs~s-----hN~hVR~g~AvaLGiacag~G~~~--------a~diL~~L~~D~~dfVRQ~AmIa~~mIl~ 650 (926)
T COG5116 584 RDLLVGTVELLSES-----HNFHVRAGVAVALGIACAGTGDKV--------ATDILEALMYDTNDFVRQSAMIAVGMILM 650 (926)
T ss_pred cchhhHHHHHhhhc-----cchhhhhhhHHHhhhhhcCCccHH--------HHHHHHHHhhCcHHHHHHHHHHHHHHHHh
Confidence 34577788888763 788999999999998888632222 35667777788889999999999998874
Q ss_pred c
Q 001833 843 N 843 (1008)
Q Consensus 843 ~ 843 (1008)
+
T Consensus 651 Q 651 (926)
T COG5116 651 Q 651 (926)
T ss_pred h
Confidence 3
No 274
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=81.76 E-value=0.62 Score=47.76 Aligned_cols=57 Identities=21% Similarity=0.374 Sum_probs=45.6
Q ss_pred CccccccccccccCCce----------eccCcccccHHHHHHHHhcC-CCCCCCcCccCCCCCCccCH
Q 001833 263 LQSFYCPITRDVMVDPV----------ETSSGQTFERSAIEKWFSDG-NNLCPLTMTVLDTSILRPNK 319 (1008)
Q Consensus 263 ~~~~~cpi~~~~m~dpv----------~~~~g~t~~r~~i~~w~~~~-~~~cp~~~~~l~~~~l~pN~ 319 (1008)
.++=.|-+|++-+-+-| .++|+|.|--.||.-|.--| ..|||.|+++.+.+.+..|.
T Consensus 222 l~d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWcivGKkqtCPYCKekVdl~rmfsnp 289 (328)
T KOG1734|consen 222 LSDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKVDLKRMFSNP 289 (328)
T ss_pred CCcchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheeecCCCCCchHHHHhhHhhhccCc
Confidence 35667888887666555 68999999999999998765 57999999988877666663
No 275
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=81.36 E-value=5.9 Score=33.02 Aligned_cols=66 Identities=9% Similarity=0.081 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHcCChhhHHHHhhcCcHHHHHHHhcc-CCHHHHHHHHHHHHHhhCCCchhHHHHhcC
Q 001833 519 KMRMATTLAEMELTDHHKASLLEGNVLGPLLHLVSR-GDIQMKKVAVKALRNLSSVPQNGLQMIKEG 584 (1008)
Q Consensus 519 ~~~aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~-~~~~~~~~A~~aL~~L~~~~~~~~~i~~~G 584 (1008)
...+++++++++..+.+-..+-+.++++.++++... +...+|--|..+|.-+++..+..+.+-+.|
T Consensus 4 lKaaLWaighIgss~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T~~G~~~L~~~g 70 (73)
T PF14668_consen 4 LKAALWAIGHIGSSPLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISSTEEGAEILDELG 70 (73)
T ss_pred HHHHHHHHHhHhcChHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCCHHHHHHHHHcC
Confidence 456899999999999888878788999999999875 467899999999999998877777666554
No 276
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=81.31 E-value=0.95 Score=47.48 Aligned_cols=42 Identities=26% Similarity=0.607 Sum_probs=35.5
Q ss_pred cccccccccccCC---ceeccCcccccHHHHHHHHhcCC--CCCCCc
Q 001833 265 SFYCPITRDVMVD---PVETSSGQTFERSAIEKWFSDGN--NLCPLT 306 (1008)
Q Consensus 265 ~~~cpi~~~~m~d---pv~~~~g~t~~r~~i~~w~~~~~--~~cp~~ 306 (1008)
-|+||+..+.-.| ||+++|||..-+.+..+-=.+|. ..||.|
T Consensus 336 ~FiCPVlKe~~t~ENpP~ml~CgHVIskeal~~LS~nG~~~FKCPYC 382 (396)
T COG5109 336 LFICPVLKELCTDENPPVMLECGHVISKEALSVLSQNGVLSFKCPYC 382 (396)
T ss_pred eeeccccHhhhcccCCCeeeeccceeeHHHHHHHhhcCcEEeeCCCC
Confidence 5999999999885 99999999999999887766663 458887
No 277
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]
Probab=81.24 E-value=67 Score=36.62 Aligned_cols=141 Identities=16% Similarity=0.214 Sum_probs=96.4
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHhcCCC----ChhhHHHHHhcCCHHHHHHHhhCCCCCCC-chhhHHHHHHHHHHHhcCC
Q 001833 726 TLVTIIQSSHNEEEIASAMGILSKLPE----VPQFTQWLLDAGALPIVLNFLKNGRQNDP-NRFQVVENAVGALRRFTAP 800 (1008)
Q Consensus 726 ~Lv~lL~~~~~~~v~~~a~~~L~nL~~----~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~-~~~~v~~~a~~aL~~L~~~ 800 (1008)
.+..++.. .+++.+-+|+-.+..++. +...++.+.++-+.+.+-+++.+++.++. ++.-.+.-++.+|..|+.
T Consensus 15 ~~~~L~~~-k~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~- 92 (698)
T KOG2611|consen 15 DCLKLLKG-KRDEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCR- 92 (698)
T ss_pred hHHHHhcc-cChHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhC-
Confidence 34455555 445677788888888877 44556778898899999999998554432 334456667778888888
Q ss_pred CCHHHHHHHHHcCChHHHHHHhhcC-ChH------HHHHHHHHHhhhhhcCCCCCCCCCCCCcccccCCCCCCcccccCc
Q 001833 801 TNLEWQKRAAEAGVIPKLVQLLEYG-TTL------TKEHAATSLARFSKNSLGLSRPIPKRKGFWCFSPPPEIGCQVHGG 873 (1008)
Q Consensus 801 ~~~~~~~~l~~~g~l~~Lv~lL~~~-~~~------v~~~Aa~aL~nLs~~~~~l~~~~~~~~g~~~~~~~~~~~c~vh~~ 873 (1008)
.|+....=.--+.||.|.+.+..+ +++ +-..+-.+|..++....
T Consensus 93 -~pElAsh~~~v~~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e~---------------------------- 143 (698)
T KOG2611|consen 93 -VPELASHEEMVSRIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAEA---------------------------- 143 (698)
T ss_pred -ChhhccCHHHHHhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCc----------------------------
Confidence 566543222235689999999854 333 66778888888874322
Q ss_pred ccCcccchhHhhccchHHHHHhhcCCChh
Q 001833 874 LCGIESSFCLLEANAVRPLVRVLEDPDHG 902 (1008)
Q Consensus 874 ~c~~~~~~~l~~~g~i~~Lv~lL~~~d~~ 902 (1008)
....|+..|+++.+.++-.-++..
T Consensus 144 -----G~~~Lia~G~~~~~~Q~y~~~~~~ 167 (698)
T KOG2611|consen 144 -----GLMTLIASGGLRVIAQMYELPDGS 167 (698)
T ss_pred -----hhHHHHhcCchHHHHHHHhCCCCc
Confidence 245588999999999877655544
No 278
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=80.78 E-value=85 Score=35.01 Aligned_cols=155 Identities=17% Similarity=0.124 Sum_probs=111.8
Q ss_pred hHHHHHHHcCCCHHHHHHHHHHHHHhcc-CChhhHHHhhc-cCCcHHHHHHHhccC-----h---------hHHHHHHHH
Q 001833 379 IPKLIYLLGSKNRDVRNRALIILHILVK-DSNDTKERLAN-GDDAVESIVRSLGRR-----I---------EERKLAVAL 442 (1008)
Q Consensus 379 i~~L~~lL~s~~~~~~~~Al~~L~~Ls~-~~~~~k~~i~~-~~g~i~~Lv~~L~~~-----~---------~~~~~A~~~ 442 (1008)
...+.+-|++........+++.|..+.. ++....+.+.. ..-..+.+.+++... . ..|..++..
T Consensus 58 ~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~F 137 (330)
T PF11707_consen 58 LKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIRF 137 (330)
T ss_pred HHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHHH
Confidence 6677788888888888899999999988 55444444443 234556677777321 1 677888887
Q ss_pred HHHhcc--CchhhHHhhcccchHHHHHHHhcCCChHHHHHHHHHHHhhcCCc-----ccHHHHHhcCcHHHHHHHHhcCC
Q 001833 443 LLELST--CNTLRDQIGDVQGCILLLVTMASSDDNQASRDAQELLENLSFSD-----DNVVQMAKANYFKHLLQRLSAGP 515 (1008)
Q Consensus 443 L~~Ls~--~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~~-----~n~~~i~~~g~v~~Lv~~L~~~~ 515 (1008)
+..+-. ++..+..+....+.+..+.+-+..+++++....+.+|..=...+ ..|..+.....+..|..+.....
T Consensus 138 ~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn~~~L~~l~~Ly~~~~ 217 (330)
T PF11707_consen 138 WLSFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDSSVSRSTKCKLFNEWTLSQLASLYSRDG 217 (330)
T ss_pred HHHHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCCCCChhhhhhhcCHHHHHHHHHHhcccC
Confidence 777643 66788888777888999999999999999999999998543322 34666777778888888766555
Q ss_pred H----HHHHHHHHHHHHHcCCh
Q 001833 516 E----SVKMRMATTLAEMELTD 533 (1008)
Q Consensus 516 ~----~~~~~aa~~L~~Ls~~~ 533 (1008)
+ .+++.+-..|..++.++
T Consensus 218 ~~~~~~~~~~vh~fL~~lcT~p 239 (330)
T PF11707_consen 218 EDEKSSVADLVHEFLLALCTDP 239 (330)
T ss_pred CcccchHHHHHHHHHHHHhcCC
Confidence 5 67777777777776544
No 279
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=78.77 E-value=1.8e+02 Score=36.29 Aligned_cols=88 Identities=17% Similarity=0.192 Sum_probs=64.8
Q ss_pred HHHHHHHHHHhcCCC-ChhhHHHHHhcCCHHHHHHHhhCCCCCCCchhhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChH
Q 001833 738 EEIASAMGILSKLPE-VPQFTQWLLDAGALPIVLNFLKNGRQNDPNRFQVVENAVGALRRFTAPTNLEWQKRAAEAGVIP 816 (1008)
Q Consensus 738 ~v~~~a~~~L~nL~~-~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~v~~~a~~aL~~L~~~~~~~~~~~l~~~g~l~ 816 (1008)
.++..+.-++++++- ++...+. .+|.+++-|... ....+|.+.+-+.+.+|.++ .+.-.-.+|
T Consensus 946 ~vra~~vvTlakmcLah~~LaKr-----~~P~lvkeLe~~-----~~~aiRnNiV~am~D~C~~Y------Tam~d~YiP 1009 (1529)
T KOG0413|consen 946 KVRAVGVVTLAKMCLAHDRLAKR-----LMPMLVKELEYN-----TAHAIRNNIVLAMGDICSSY------TAMTDRYIP 1009 (1529)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHH-----HHHHHHHHHHhh-----hHHHHhcceeeeehhhHHHH------HHHHHHhhH
Confidence 355566677888776 5544432 478888888873 35667777777777777642 233345789
Q ss_pred HHHHHhhcCChHHHHHHHHHHhhhh
Q 001833 817 KLVQLLEYGTTLTKEHAATSLARFS 841 (1008)
Q Consensus 817 ~Lv~lL~~~~~~v~~~Aa~aL~nLs 841 (1008)
.+...|.++++-+|+++...|.+|.
T Consensus 1010 ~I~~~L~Dp~~iVRrqt~ilL~rLL 1034 (1529)
T KOG0413|consen 1010 MIAASLCDPSVIVRRQTIILLARLL 1034 (1529)
T ss_pred HHHHHhcCchHHHHHHHHHHHHHHH
Confidence 9999999999999999999999997
No 280
>KOG0396 consensus Uncharacterized conserved protein [Function unknown]
Probab=78.03 E-value=1.6 Score=47.34 Aligned_cols=48 Identities=25% Similarity=0.339 Sum_probs=41.2
Q ss_pred cccccccccccCC---ceeccCcccccHHHHHHHHhcCCCCCCCcCccCCC
Q 001833 265 SFYCPITRDVMVD---PVETSSGQTFERSAIEKWFSDGNNLCPLTMTVLDT 312 (1008)
Q Consensus 265 ~~~cpi~~~~m~d---pv~~~~g~t~~r~~i~~w~~~~~~~cp~~~~~l~~ 312 (1008)
.+.|.||++.|-| |++.+.|++|--.+|++|=...+-.||.+++.+..
T Consensus 330 ~Lvc~isge~md~~N~P~lfpnG~Vyg~~~L~s~~~~~~i~dP~~~k~f~~ 380 (389)
T KOG0396|consen 330 RLVCSISGELMDDDNPPHLFPNGYVYGTKALESLNEDDGIGDPRTKKVFRY 380 (389)
T ss_pred HHHhhccccccCCCCCcccccCceeehhHHHHhhcccCCCcCCCCCccccH
Confidence 4678899999986 99999999999999999976544889999887753
No 281
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=77.91 E-value=22 Score=44.15 Aligned_cols=186 Identities=15% Similarity=0.119 Sum_probs=115.4
Q ss_pred HHHHHhhccCChhHHHHHHHHHHHhccCCChhHHHhhhcccchHHHHHHhcCCCCHHHHHHHHHHHhcCCC-ChhhHHHH
Q 001833 682 PVLVQLCEHDNENVRANAVKLFCCLVDDGDEAIIREHVGQKCLETLVTIIQSSHNEEEIASAMGILSKLPE-VPQFTQWL 760 (1008)
Q Consensus 682 ~~Lv~ll~~~~~~v~~~a~~~L~~Ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~v~~~a~~~L~nL~~-~~~~~~~l 760 (1008)
+.+-.-+.+.+-.-|..|+..+.-..+... ........+.+..+......+.+..+...++.+|.-++. .... ..=
T Consensus 256 ~~l~t~~~s~~WK~R~Eale~l~~~l~e~~--~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~-~~~ 332 (815)
T KOG1820|consen 256 KNLETEMLSKKWKDRKEALEELVAILEEAK--KEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPL-FRK 332 (815)
T ss_pred hHHHHhhhccchHHHHHHHHHHHHHHhccc--cccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchh-hHH
Confidence 334444455566666667666555442221 111111224455556665555677777888888888876 2111 222
Q ss_pred HhcCCHHHHHHHhhCCCCCCCchhhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHHHhhcCChHHHHHHHHHHhhh
Q 001833 761 LDAGALPIVLNFLKNGRQNDPNRFQVVENAVGALRRFTAPTNLEWQKRAAEAGVIPKLVQLLEYGTTLTKEHAATSLARF 840 (1008)
Q Consensus 761 ~~~g~l~~Lv~lL~~~~~~~~~~~~v~~~a~~aL~~L~~~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~v~~~Aa~aL~nL 840 (1008)
+..++.+.++..+.+ ....+++.+..++-.+...+ .-....+.+...+++++|..+..+...+...
T Consensus 333 ~~~~v~p~lld~lke------kk~~l~d~l~~~~d~~~ns~--------~l~~~~~~I~e~lk~knp~~k~~~~~~l~r~ 398 (815)
T KOG1820|consen 333 YAKNVFPSLLDRLKE------KKSELRDALLKALDAILNST--------PLSKMSEAILEALKGKNPQIKGECLLLLDRK 398 (815)
T ss_pred HHHhhcchHHHHhhh------ccHHHHHHHHHHHHHHHhcc--------cHHHHHHHHHHHhcCCChhhHHHHHHHHHHH
Confidence 345678899999988 56677777776666555421 1134567788899999999999988777777
Q ss_pred hhcCCCCCCCCCCCCcccccCCCCCCcccccCcccCcccchhHhhccchHHHHHhhcCCChhhhHHHHHHHHhhh
Q 001833 841 SKNSLGLSRPIPKRKGFWCFSPPPEIGCQVHGGLCGIESSFCLLEANAVRPLVRVLEDPDHGACEASLDALVTLI 915 (1008)
Q Consensus 841 s~~~~~l~~~~~~~~g~~~~~~~~~~~c~vh~~~c~~~~~~~l~~~g~i~~Lv~lL~~~d~~v~~~al~aL~~L~ 915 (1008)
.......+-+ . ---.+.++.++....+.+..||.+|..++..+.
T Consensus 399 ~~~~~~~~~~--------------------------~-----~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~ 442 (815)
T KOG1820|consen 399 LRKLGPKTVE--------------------------K-----ETVKTLVPHLIKHINDTDKDVRKAALEAVAAVM 442 (815)
T ss_pred HhhcCCcCcc--------------------------h-----hhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHH
Confidence 6443320000 0 001235677777778899999999999999887
No 282
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=77.60 E-value=6.3 Score=34.66 Aligned_cols=69 Identities=20% Similarity=0.204 Sum_probs=54.0
Q ss_pred HHHHHHHhhccCChHHHHHHHHHHHHhccCCChhhHHHHhhhcCChHHHHHhhccCChhHHHHHHHHHHHhcc
Q 001833 636 EIFMLFSLINLTGPNVQQRILQTFNALCRSPSAGNIKTTLTQCSAIPVLVQLCEHDNENVRANAVKLFCCLVD 708 (1008)
Q Consensus 636 ~i~~L~~ll~~~~~~v~~~al~aL~~L~~~~~~~~~~~~i~e~~~i~~Lv~ll~~~~~~v~~~a~~~L~~Ls~ 708 (1008)
.....+..+.++.+.+|.+++..|..|....+ .......+.+..+...++++++-+-.+|+.+|..|+.
T Consensus 4 ~~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~----~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~ 72 (92)
T PF10363_consen 4 TLQEALSDLNDPLPPVRAHGLVLLRKLIESKS----EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALAD 72 (92)
T ss_pred HHHHHHHHccCCCcchHHHHHHHHHHHHHcCC----cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHH
Confidence 45556667777888999999999999998754 1122223467788889999999999999999999983
No 283
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=77.41 E-value=1e+02 Score=32.51 Aligned_cols=202 Identities=19% Similarity=0.180 Sum_probs=109.4
Q ss_pred HHHHHHH-hcCCHHHHHHHHHHHHHHcCCh-hhHHHHhhcCcHHHHHHHhccCCHHHHHHHHHHHHHhhCCCchhHHHHh
Q 001833 505 KHLLQRL-SAGPESVKMRMATTLAEMELTD-HHKASLLEGNVLGPLLHLVSRGDIQMKKVAVKALRNLSSVPQNGLQMIK 582 (1008)
Q Consensus 505 ~~Lv~~L-~~~~~~~~~~aa~~L~~Ls~~~-~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~~~~~~~i~~ 582 (1008)
+.|+..+ +..+++.....+..|..++.++ .+. .-++..|..+...++...+.-+...+..+-.... +. .
T Consensus 3 ~~L~~~l~~~~~~~~~~~~L~~L~~l~~~~~~~~-----~~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~-r~--f- 73 (234)
T PF12530_consen 3 PLLLYKLGKISDPELQLPLLEALPSLACHKNVCV-----PPVLQTLVSLVEQGSLELRYVALRLLTLLWKAND-RH--F- 73 (234)
T ss_pred HHHHHHhcCCCChHHHHHHHHHHHHHhccCccch-----hHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhCc-hH--H-
Confidence 3444433 3446788888889999988776 333 2345566677766666555555666655543111 11 1
Q ss_pred cCChHHHHHH-----hcccC--CCCcchHHHHHHHHHHHhccccccccCCcccccccchhHHHHHHHhh-ccCChHHHHH
Q 001833 583 EGAVGPLVDL-----LLHHS--SSSSSLREETATAIMHLAVSTMYQESSQTPVTLLESDKEIFMLFSLI-NLTGPNVQQR 654 (1008)
Q Consensus 583 ~G~v~~Ll~l-----l~~~~--~~~~~~~~~a~~~L~nLa~~~~~~~~~~~~~~~l~~~~~i~~L~~ll-~~~~~~v~~~ 654 (1008)
|.+..++.. ..... +...+........+..++...+. . ....+..+...+ ...++.++..
T Consensus 74 -~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~-~----------g~~ll~~ls~~L~~~~~~~~~al 141 (234)
T PF12530_consen 74 -PFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPD-H----------GVDLLPLLSGCLNQSCDEVAQAL 141 (234)
T ss_pred -HHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChh-h----------HHHHHHHHHHHHhccccHHHHHH
Confidence 223333333 11111 11122333334566777764443 2 245678888888 7888899999
Q ss_pred HHHHHHHhccCCChhhHHHHhhhcCChHHHHHhhccC-ChhHHHHHHHHHHHhccCCChhHHHhhhcccchHHHHHHhcC
Q 001833 655 ILQTFNALCRSPSAGNIKTTLTQCSAIPVLVQLCEHD-NENVRANAVKLFCCLVDDGDEAIIREHVGQKCLETLVTIIQS 733 (1008)
Q Consensus 655 al~aL~~L~~~~~~~~~~~~i~e~~~i~~Lv~ll~~~-~~~v~~~a~~~L~~Ls~~~~~~~~~~~~~~~~i~~Lv~lL~~ 733 (1008)
++.++..||... ..++. .....+..-+..+ .+.+....+..+..+.....+..........++..+.+...+
T Consensus 142 ale~l~~Lc~~~-vvd~~------s~w~vl~~~l~~~~rp~v~~~l~~l~~l~~~~~~~~e~~~~~~~~~l~~lW~~~~~ 214 (234)
T PF12530_consen 142 ALEALAPLCEAE-VVDFY------SAWKVLQKKLSLDYRPLVLKSLCSLFALVPQGAVDSEEYEELKRQILQLLWEYTSS 214 (234)
T ss_pred HHHHHHHHHHHh-hccHH------HHHHHHHHhcCCccchHHHHHHHHHHHHhccccCChhhhhHHHHHHHHHHHhhccc
Confidence 999999999531 11111 1233344434333 466666666666666522223332333444566666666665
Q ss_pred C
Q 001833 734 S 734 (1008)
Q Consensus 734 ~ 734 (1008)
.
T Consensus 215 ~ 215 (234)
T PF12530_consen 215 S 215 (234)
T ss_pred c
Confidence 4
No 284
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=77.24 E-value=1e+02 Score=32.48 Aligned_cols=136 Identities=15% Similarity=0.115 Sum_probs=78.7
Q ss_pred HHHHH-HhcCCChHHHHHHHHHHHhhcCCc-ccHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHHcCChhhHHHHhh
Q 001833 464 LLLVT-MASSDDNQASRDAQELLENLSFSD-DNVVQMAKANYFKHLLQRLSAGPESVKMRMATTLAEMELTDHHKASLLE 541 (1008)
Q Consensus 464 ~~Lv~-lL~~~~~~~~~~a~~aL~~Ls~~~-~n~~~i~~~g~v~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~~~~k~~i~~ 541 (1008)
+.|.. +-+..++..+...+.+|..++.++ .+...+ +..|..+...+..+.+.-+...+..+-..++..-
T Consensus 3 ~~L~~~l~~~~~~~~~~~~L~~L~~l~~~~~~~~~~v-----~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~f---- 73 (234)
T PF12530_consen 3 PLLLYKLGKISDPELQLPLLEALPSLACHKNVCVPPV-----LQTLVSLVEQGSLELRYVALRLLTLLWKANDRHF---- 73 (234)
T ss_pred HHHHHHhcCCCChHHHHHHHHHHHHHhccCccchhHH-----HHHHHHHHcCCchhHHHHHHHHHHHHHHhCchHH----
Confidence 34444 334678999999999999998877 443333 3445555566666665555666666532221110
Q ss_pred cCcHHHHHHH--h------ccC--CHHHHHHHHHHHHHhhCCCchhHHHHhcCChHHHHHHhc-ccCCCCcchHHHHHHH
Q 001833 542 GNVLGPLLHL--V------SRG--DIQMKKVAVKALRNLSSVPQNGLQMIKEGAVGPLVDLLL-HHSSSSSSLREETATA 610 (1008)
Q Consensus 542 ~g~i~~Lv~l--L------~~~--~~~~~~~A~~aL~~L~~~~~~~~~i~~~G~v~~Ll~ll~-~~~~~~~~~~~~a~~~ 610 (1008)
+.+..++.. + .++ ..+.....+.++..+|...+++. ...++.+..++. .+. +..+..++.+
T Consensus 74 -~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~~g----~~ll~~ls~~L~~~~~---~~~~alale~ 145 (234)
T PF12530_consen 74 -PFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPDHG----VDLLPLLSGCLNQSCD---EVAQALALEA 145 (234)
T ss_pred -HHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChhhH----HHHHHHHHHHHhcccc---HHHHHHHHHH
Confidence 334444433 1 111 22334444567888886433311 124677777784 332 5688899999
Q ss_pred HHHHhc
Q 001833 611 IMHLAV 616 (1008)
Q Consensus 611 L~nLa~ 616 (1008)
|..|+.
T Consensus 146 l~~Lc~ 151 (234)
T PF12530_consen 146 LAPLCE 151 (234)
T ss_pred HHHHHH
Confidence 999984
No 285
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=77.17 E-value=19 Score=41.49 Aligned_cols=155 Identities=15% Similarity=0.097 Sum_probs=95.6
Q ss_pred HHHHhhccCChHHHHHHHHHHHHhccCCChhhHHHHhhhcCChHHHHHh-hccCChhHHHHHHHHHHHhccCCChhHHHh
Q 001833 639 MLFSLINLTGPNVQQRILQTFNALCRSPSAGNIKTTLTQCSAIPVLVQL-CEHDNENVRANAVKLFCCLVDDGDEAIIRE 717 (1008)
Q Consensus 639 ~L~~ll~~~~~~v~~~al~aL~~L~~~~~~~~~~~~i~e~~~i~~Lv~l-l~~~~~~v~~~a~~~L~~Ls~~~~~~~~~~ 717 (1008)
.+-.++.+.++.+|..-+.++.---.... ..+++..|+.. ..+.++++|++|+.+|..++-.
T Consensus 520 ~I~ell~d~ds~lRy~G~fs~alAy~GTg---------n~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~-------- 582 (926)
T COG5116 520 YINELLYDKDSILRYNGVFSLALAYVGTG---------NLGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCD-------- 582 (926)
T ss_pred HHHHHhcCchHHhhhccHHHHHHHHhcCC---------cchhHhhhheeecccCchHHHHHHHHheeeeEec--------
Confidence 34445556666666654443322111111 12567777776 5667999999999999988722
Q ss_pred hhcccchHHHHHHhcCCCCHHHHHHHHHHHhcCCCChhhHHHHHhcCCHHHHHHHhhCCCCCCCchhhHHHHHHHHHHHh
Q 001833 718 HVGQKCLETLVTIIQSSHNEEEIASAMGILSKLPEVPQFTQWLLDAGALPIVLNFLKNGRQNDPNRFQVVENAVGALRRF 797 (1008)
Q Consensus 718 ~~~~~~i~~Lv~lL~~~~~~~v~~~a~~~L~nL~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~v~~~a~~aL~~L 797 (1008)
+...+...+++|..+.+..++...+-+|+--+....... ++..|-.++.+ ...-+|..|+-+++-+
T Consensus 583 --D~~~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~~~------a~diL~~L~~D------~~dfVRQ~AmIa~~mI 648 (926)
T COG5116 583 --DRDLLVGTVELLSESHNFHVRAGVAVALGIACAGTGDKV------ATDILEALMYD------TNDFVRQSAMIAVGMI 648 (926)
T ss_pred --CcchhhHHHHHhhhccchhhhhhhHHHhhhhhcCCccHH------HHHHHHHHhhC------cHHHHHHHHHHHHHHH
Confidence 335777888999988888898888888877665222111 24455556666 5677888888888776
Q ss_pred cCCCCHHHHHHHHHcCChHHHHHHhhcCC
Q 001833 798 TAPTNLEWQKRAAEAGVIPKLVQLLEYGT 826 (1008)
Q Consensus 798 ~~~~~~~~~~~l~~~g~l~~Lv~lL~~~~ 826 (1008)
..-.+++....+ .+++..+.+++.+..
T Consensus 649 l~Q~n~~Lnp~v--~~I~k~f~~vI~~Kh 675 (926)
T COG5116 649 LMQCNPELNPNV--KRIIKKFNRVIVDKH 675 (926)
T ss_pred HhhcCcccChhH--HHHHHHHHHHHhhhh
Confidence 543244433222 234555666665443
No 286
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=76.66 E-value=17 Score=45.16 Aligned_cols=178 Identities=15% Similarity=0.145 Sum_probs=114.2
Q ss_pred chhhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHHHhh-cCChHHHHHHHHHHhhhhhcCCCCCCCCCCCCccccc
Q 001833 782 NRFQVVENAVGALRRFTAPTNLEWQKRAAEAGVIPKLVQLLE-YGTTLTKEHAATSLARFSKNSLGLSRPIPKRKGFWCF 860 (1008)
Q Consensus 782 ~~~~v~~~a~~aL~~L~~~~~~~~~~~l~~~g~l~~Lv~lL~-~~~~~v~~~Aa~aL~nLs~~~~~l~~~~~~~~g~~~~ 860 (1008)
.+..-+.+++..+...... +.....-...|.+-.+..... +.+..+...|+..|..++......
T Consensus 265 ~~WK~R~Eale~l~~~l~e--~~~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~------------- 329 (815)
T KOG1820|consen 265 KKWKDRKEALEELVAILEE--AKKEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPL------------- 329 (815)
T ss_pred cchHHHHHHHHHHHHHHhc--cccccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchh-------------
Confidence 4555666777666665552 221111111223333333332 457788889999999988543221
Q ss_pred CCCCCCcccccCcccCcccchhHhhccchHHHHHhhcCCChhhhHHHHHHHHhhhcccccchhhHHHHhcCchHHHHHHh
Q 001833 861 SPPPEIGCQVHGGLCGIESSFCLLEANAVRPLVRVLEDPDHGACEASLDALVTLIEGERLQNGSKVLEDANAIDRMVRFL 940 (1008)
Q Consensus 861 ~~~~~~~c~vh~~~c~~~~~~~l~~~g~i~~Lv~lL~~~d~~v~~~al~aL~~L~~~~~~~~~~~~i~~~~~i~~l~~ll 940 (1008)
|.=...+..+.+++.+.+....+++.+..++-.++... .-....+.|...+
T Consensus 330 --------------------~~~~~~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns~---------~l~~~~~~I~e~l 380 (815)
T KOG1820|consen 330 --------------------FRKYAKNVFPSLLDRLKEKKSELRDALLKALDAILNST---------PLSKMSEAILEAL 380 (815)
T ss_pred --------------------hHHHHHhhcchHHHHhhhccHHHHHHHHHHHHHHHhcc---------cHHHHHHHHHHHh
Confidence 11123457788999999999999998888888877211 1122356788888
Q ss_pred cCCChHHHHHHHHHHHHHhcChHHHHHhc---cccCchhhhhcccCCchhhHHHHHHHHHHhcccc
Q 001833 941 SSPSPKLQEKALDSVERIFRLPEFKQKYG---KSAQMPLVDLTQRGNSSMKSLSARVLAHLNVLQD 1003 (1008)
Q Consensus 941 ~~~~~~l~~~a~~~L~~l~~~~~~~~~~~---~~~~~~Lv~l~~~~~~~~~~~Aa~~L~~L~~~~~ 1003 (1008)
.++++.++..+...+.+.++..+....+. ....+.++....+.+.++|..|..+++.+-+.++
T Consensus 381 k~knp~~k~~~~~~l~r~~~~~~~~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~~G 446 (815)
T KOG1820|consen 381 KGKNPQIKGECLLLLDRKLRKLGPKTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMKVHG 446 (815)
T ss_pred cCCChhhHHHHHHHHHHHHhhcCCcCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHHhh
Confidence 99999999998888888776654211111 1223567777778899999999999988776654
No 287
>KOG4464 consensus Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) [Signal transduction mechanisms]
Probab=76.17 E-value=1.4e+02 Score=33.62 Aligned_cols=81 Identities=16% Similarity=0.114 Sum_probs=57.0
Q ss_pred CHHHHHHHHHHHHHhccCChhhHHHhhccCCcHHHHHHHhcc------ChhHHHHHHHHHHHhcc-CchhhHHhhcccch
Q 001833 390 NRDVRNRALIILHILVKDSNDTKERLANGDDAVESIVRSLGR------RIEERKLAVALLLELST-CNTLRDQIGDVQGC 462 (1008)
Q Consensus 390 ~~~~~~~Al~~L~~Ls~~~~~~k~~i~~~~g~i~~Lv~~L~~------~~~~~~~A~~~L~~Ls~-~~~~~~~i~~~~g~ 462 (1008)
+..+-..|+++|+|+..++...+....+ ......+.+.+.. ..+..-.-+.+|+-|+. ..+.|.++....++
T Consensus 110 d~~vi~EslKCLcNlvf~Sq~~q~~~~~-~~~~~~ll~~v~~~~er~~~~~~~~~dlrLLflltale~~~Rsql~~~l~G 188 (532)
T KOG4464|consen 110 DMHVIMESLKCLCNLVFHSQRAQDLFLE-NPLTGKLLQRVLGEFERNFPKDSSIFDLRLLFLLTALETDHRSQLIAELLG 188 (532)
T ss_pred chHHHHHHHHHHHHHHhccHHHHHHHHh-hhhHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHhhHHHHHHHHHHhcc
Confidence 4578889999999999999888888887 5555555554422 12233445556666644 55777777766788
Q ss_pred HHHHHHHhc
Q 001833 463 ILLLVTMAS 471 (1008)
Q Consensus 463 i~~Lv~lL~ 471 (1008)
++.+.+.+.
T Consensus 189 l~~lt~~le 197 (532)
T KOG4464|consen 189 LELLTNWLE 197 (532)
T ss_pred cHHHHHHhh
Confidence 899999886
No 288
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=75.95 E-value=1.3e+02 Score=36.52 Aligned_cols=207 Identities=17% Similarity=0.150 Sum_probs=108.0
Q ss_pred chHHHHHHHcCCCHHHHHHHHHHHHHhccCChhhHHHh----hc--cCCcHHHHHHHhccChhHHHHHHHHHH---Hhcc
Q 001833 378 YIPKLIYLLGSKNRDVRNRALIILHILVKDSNDTKERL----AN--GDDAVESIVRSLGRRIEERKLAVALLL---ELST 448 (1008)
Q Consensus 378 ~i~~L~~lL~s~~~~~~~~Al~~L~~Ls~~~~~~k~~i----~~--~~g~i~~Lv~~L~~~~~~~~~A~~~L~---~Ls~ 448 (1008)
.+-.|+++|+.-+.+.-.....-+.. .. ...+..+ .. ...++..+.+.+.++.-.-..|+.++. ....
T Consensus 312 ~f~~lv~~lR~~~~e~l~~l~~~~~~-~~--~~~r~~~~Dal~~~GT~~a~~~i~~~i~~~~~~~~ea~~~~~~~~~~~~ 388 (574)
T smart00638 312 KFLRLVRLLRTLSEEQLEQLWRQLYE-KK--KKARRIFLDAVAQAGTPPALKFIKQWIKNKKITPLEAAQLLAVLPHTAR 388 (574)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHh-CC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhh
Confidence 45567777776665544444443332 11 1223222 22 023455566666553211122333222 2222
Q ss_pred CchhhHHhhcccchHHHHHHHhcCC----ChHHHHHHHHHHHhh----cCCcccHHHHHhcCcHHHHHHHHhc----CCH
Q 001833 449 CNTLRDQIGDVQGCILLLVTMASSD----DNQASRDAQELLENL----SFSDDNVVQMAKANYFKHLLQRLSA----GPE 516 (1008)
Q Consensus 449 ~~~~~~~i~~~~g~i~~Lv~lL~~~----~~~~~~~a~~aL~~L----s~~~~n~~~i~~~g~v~~Lv~~L~~----~~~ 516 (1008)
.|. ...+..+..++.++ .+.+...|+.++..| |.+.+.+...+...+++.+...|.. ++.
T Consensus 389 ~Pt--------~~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 460 (574)
T smart00638 389 YPT--------EEILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDE 460 (574)
T ss_pred cCC--------HHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCc
Confidence 222 23455566666643 445556666666555 4444332222233456666655543 344
Q ss_pred HHHHHHHHHHHHHcCChhhHHHHhhcCcHHHHHHHhc-c--CCHHHHHHHHHHHHHhhC-CCchhHHHHhcCChHHHHHH
Q 001833 517 SVKMRMATTLAEMELTDHHKASLLEGNVLGPLLHLVS-R--GDIQMKKVAVKALRNLSS-VPQNGLQMIKEGAVGPLVDL 592 (1008)
Q Consensus 517 ~~~~~aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~-~--~~~~~~~~A~~aL~~L~~-~~~~~~~i~~~G~v~~Ll~l 592 (1008)
+.+...+.+|+|+. ....++.|...+. + .++.+|..|++||..++. .+. -+-+.|+.+
T Consensus 461 ~~~~~~LkaLGN~g----------~~~~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~--------~v~~~l~~i 522 (574)
T smart00638 461 EEIQLYLKALGNAG----------HPSSIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPR--------KVQEVLLPI 522 (574)
T ss_pred hheeeHHHhhhccC----------ChhHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCch--------HHHHHHHHH
Confidence 45566777777743 2345566666665 2 256899999999998874 222 134677777
Q ss_pred hcccCCCCcchHHHHHHHHHHH
Q 001833 593 LLHHSSSSSSLREETATAIMHL 614 (1008)
Q Consensus 593 l~~~~~~~~~~~~~a~~~L~nL 614 (1008)
..+.... ++++-.|..+|...
T Consensus 523 ~~n~~e~-~EvRiaA~~~lm~t 543 (574)
T smart00638 523 YLNRAEP-PEVRMAAVLVLMET 543 (574)
T ss_pred HcCCCCC-hHHHHHHHHHHHhc
Confidence 7766544 67777666666543
No 289
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=75.87 E-value=4.3 Score=41.02 Aligned_cols=81 Identities=14% Similarity=0.241 Sum_probs=63.3
Q ss_pred hHHHHhcCChHHHHHHhcccC------CCCcchHHHHHHHHHHHhccccccccCCcccccccchhHHHHHHHhhccCChH
Q 001833 577 GLQMIKEGAVGPLVDLLLHHS------SSSSSLREETATAIMHLAVSTMYQESSQTPVTLLESDKEIFMLFSLINLTGPN 650 (1008)
Q Consensus 577 ~~~i~~~G~v~~Ll~ll~~~~------~~~~~~~~~a~~~L~nLa~~~~~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~ 650 (1008)
-..+++.||+..|+.+|..-. .........++.+|..|..+..+... ++...+.+..+...+.+.++.
T Consensus 100 v~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~n~~~G~~~------v~~~~~~v~~i~~~L~s~~~~ 173 (187)
T PF06371_consen 100 VQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALMNTKYGLEA------VLSHPDSVNLIALSLDSPNIK 173 (187)
T ss_dssp HHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHTSSHHHHHH------HHCSSSHHHHHHHT--TTSHH
T ss_pred HHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHccHHHHHH------HHcCcHHHHHHHHHHCCCCHH
Confidence 456778899999998886421 12246788899999999987776665 788899999999999999999
Q ss_pred HHHHHHHHHHHhc
Q 001833 651 VQQRILQTFNALC 663 (1008)
Q Consensus 651 v~~~al~aL~~L~ 663 (1008)
++..++..|..+|
T Consensus 174 ~r~~~leiL~~lc 186 (187)
T PF06371_consen 174 TRKLALEILAALC 186 (187)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998886
No 290
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=75.70 E-value=81 Score=37.11 Aligned_cols=98 Identities=13% Similarity=0.093 Sum_probs=63.3
Q ss_pred HHHHHHHHHHhcCCCChhhHHHHHhcCCHHHHHHHhhCCCCCCCchhhHHHHHHHHHHHhcCCCCHHHHHHHHHcC--Ch
Q 001833 738 EEIASAMGILSKLPEVPQFTQWLLDAGALPIVLNFLKNGRQNDPNRFQVVENAVGALRRFTAPTNLEWQKRAAEAG--VI 815 (1008)
Q Consensus 738 ~v~~~a~~~L~nL~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~v~~~a~~aL~~L~~~~~~~~~~~l~~~g--~l 815 (1008)
+....+..++.||..+..... ++..|..+|.++......+..+...|+..+..+..+..++....+.-.- ++
T Consensus 230 ~l~~~~w~~m~nL~~S~~g~~------~i~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~~~~~~~~~l~~~~~~vl 303 (464)
T PF11864_consen 230 SLCKPSWRTMRNLLKSHLGHS------AIRTLCDILRSPDPQNKRDINVLRGAVFFLRMLLWGSGEQGYPSLPFSPSSVL 303 (464)
T ss_pred ccchhHHHHHHHHHcCccHHH------HHHHHHHHHcccCccccccHHHHhhHHHHHHHHHhccccCCcceecccHHHHH
Confidence 345567788888887443322 4677888885433333456778889999999988863222222222222 67
Q ss_pred HHHHHHhhcCChHHHHHHHHHHhhhh
Q 001833 816 PKLVQLLEYGTTLTKEHAATSLARFS 841 (1008)
Q Consensus 816 ~~Lv~lL~~~~~~v~~~Aa~aL~nLs 841 (1008)
|.|...++.+++.+-......+.++.
T Consensus 304 ~sl~~al~~~~~~v~~eIl~~i~~ll 329 (464)
T PF11864_consen 304 PSLLNALKSNSPRVDYEILLLINRLL 329 (464)
T ss_pred HHHHHHHhCCCCeehHHHHHHHHHHH
Confidence 88888888777766666667776666
No 291
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=75.27 E-value=3.3 Score=31.52 Aligned_cols=40 Identities=25% Similarity=0.637 Sum_probs=28.3
Q ss_pred cccccc--ccCCceeccCc-----ccccHHHHHHHHhc-CCCCCCCcC
Q 001833 268 CPITRD--VMVDPVETSSG-----QTFERSAIEKWFSD-GNNLCPLTM 307 (1008)
Q Consensus 268 cpi~~~--~m~dpv~~~~g-----~t~~r~~i~~w~~~-~~~~cp~~~ 307 (1008)
|-|+++ --.+|.+.++. +-+=+.++.+|+.. +..+||.++
T Consensus 2 CrIC~~~~~~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 2 CRICHDEGDEGDPLVSPCRCKGSLKYVHQECLERWINESGNKTCEICK 49 (49)
T ss_pred ccCCCCCCCCCCeeEeccccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence 556654 33467777764 55788999999974 467899874
No 292
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=75.13 E-value=2.9e+02 Score=36.64 Aligned_cols=144 Identities=15% Similarity=0.211 Sum_probs=87.4
Q ss_pred cCcHHHHHHHHhcCCHHHHHHHHHHHHHHcCChhhHHHHhhcCcHHHHHHHhccCCHHHHHHHHHHHHHhhC-CCchhHH
Q 001833 501 ANYFKHLLQRLSAGPESVKMRMATTLAEMELTDHHKASLLEGNVLGPLLHLVSRGDIQMKKVAVKALRNLSS-VPQNGLQ 579 (1008)
Q Consensus 501 ~g~v~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~-~~~~~~~ 579 (1008)
.+++..++..|......+|..|+.+|..+...|..- +.....-..+..-+.+.+..+|+.|+..++.... .++.-.+
T Consensus 815 D~yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~v--L~~~dvq~~Vh~R~~DssasVREAaldLvGrfvl~~~e~~~q 892 (1692)
T KOG1020|consen 815 DPYLKLILSVLGENAIALRTKALKCLSMIVEADPSV--LSRPDVQEAVHGRLNDSSASVREAALDLVGRFVLSIPELIFQ 892 (1692)
T ss_pred HHHHHHHHHHhcCchHHHHHHHHHHHHHHHhcChHh--hcCHHHHHHHHHhhccchhHHHHHHHHHHhhhhhccHHHHHH
Confidence 356667777788777888999999998886555321 1112222333444556677889999888886552 3332222
Q ss_pred HHhcCChHHHHHHhcccCCCCcchHHHHHHHHHHHhccccccccCCcccccccchhHHHHHHHhhcc--CChH-HHHHHH
Q 001833 580 MIKEGAVGPLVDLLLHHSSSSSSLREETATAIMHLAVSTMYQESSQTPVTLLESDKEIFMLFSLINL--TGPN-VQQRIL 656 (1008)
Q Consensus 580 i~~~G~v~~Ll~ll~~~~~~~~~~~~~a~~~L~nLa~~~~~~~~~~~~~~~l~~~~~i~~L~~ll~~--~~~~-v~~~al 656 (1008)
.. ..+.+-+.+.. ..++..+..+|+.++...+.-. ..+..+..++.. ..+. ++.-+.
T Consensus 893 yY-----~~i~erIlDtg---vsVRKRvIKIlrdic~e~pdf~------------~i~~~cakmlrRv~DEEg~I~kLv~ 952 (1692)
T KOG1020|consen 893 YY-----DQIIERILDTG---VSVRKRVIKILRDICEETPDFS------------KIVDMCAKMLRRVNDEEGNIKKLVR 952 (1692)
T ss_pred HH-----HHHHhhcCCCc---hhHHHHHHHHHHHHHHhCCChh------------hHHHHHHHHHHHhccchhHHHHHHH
Confidence 21 22333333222 5689999999999987544322 245556666652 2333 888888
Q ss_pred HHHHHhccCC
Q 001833 657 QTFNALCRSP 666 (1008)
Q Consensus 657 ~aL~~L~~~~ 666 (1008)
.+|..+=..|
T Consensus 953 etf~klWF~p 962 (1692)
T KOG1020|consen 953 ETFLKLWFTP 962 (1692)
T ss_pred HHHHHHhccC
Confidence 8888875544
No 293
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=74.90 E-value=1.5 Score=50.61 Aligned_cols=60 Identities=18% Similarity=0.338 Sum_probs=42.3
Q ss_pred ccccccccccccC----CceeccCcccccHHHHHHHHhcCCCCCC--CcCc--cCCCCCCccCHhhHHHHH
Q 001833 264 QSFYCPITRDVMV----DPVETSSGQTFERSAIEKWFSDGNNLCP--LTMT--VLDTSILRPNKTLRQSIE 326 (1008)
Q Consensus 264 ~~~~cpi~~~~m~----dpv~~~~g~t~~r~~i~~w~~~~~~~cp--~~~~--~l~~~~l~pN~~l~~~I~ 326 (1008)
+-++||||...|- .||.+-||||.||.|.+.-.+ .+|| .-.. ....++..-|++|-+.+.
T Consensus 10 ~~l~c~ic~n~f~~~~~~Pvsl~cghtic~~c~~~lyn---~scp~~~De~~~~~~~~e~p~n~alL~~~~ 77 (861)
T KOG3161|consen 10 LLLLCDICLNLFVVQRLEPVSLQCGHTICGHCVQLLYN---ASCPTKRDEDSSLMQLKEEPRNYALLRREH 77 (861)
T ss_pred HHhhchHHHHHHHHHhcCcccccccchHHHHHHHhHhh---ccCCCCccccchhcChhhcchhHHHHHhhc
Confidence 4578999977765 799999999999999999874 4666 2222 223355666777765543
No 294
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=74.25 E-value=16 Score=36.83 Aligned_cols=78 Identities=17% Similarity=0.167 Sum_probs=61.7
Q ss_pred cHHHHHhcCcHHHHHHHHhc---------CCHHHHHHHHHHHHHHcCChhhHHHHhh-cCcHHHHHHHhccCCHHHHHHH
Q 001833 494 NVVQMAKANYFKHLLQRLSA---------GPESVKMRMATTLAEMELTDHHKASLLE-GNVLGPLLHLVSRGDIQMKKVA 563 (1008)
Q Consensus 494 n~~~i~~~g~v~~Lv~~L~~---------~~~~~~~~aa~~L~~Ls~~~~~k~~i~~-~g~i~~Lv~lL~~~~~~~~~~A 563 (1008)
-...+++.|++..|+..|.. ...+....++.+|..+..+..+...+.. .+++..|+..|.+.++.++..+
T Consensus 99 Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~n~~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~ 178 (187)
T PF06371_consen 99 WVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALMNTKYGLEAVLSHPDSVNLIALSLDSPNIKTRKLA 178 (187)
T ss_dssp HHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHTSSHHHHHHHHCSSSHHHHHHHT--TTSHHHHHHH
T ss_pred HHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHccHHHHHHHHcCcHHHHHHHHHHCCCCHHHHHHH
Confidence 35677788999999888753 2346778889999999888888776665 6799999999999999999999
Q ss_pred HHHHHHhh
Q 001833 564 VKALRNLS 571 (1008)
Q Consensus 564 ~~aL~~L~ 571 (1008)
+..|..+|
T Consensus 179 leiL~~lc 186 (187)
T PF06371_consen 179 LEILAALC 186 (187)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99999887
No 295
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=74.18 E-value=1e+02 Score=34.40 Aligned_cols=160 Identities=13% Similarity=0.223 Sum_probs=111.8
Q ss_pred HHHHHHhhccCChHHHHHHHHHHHHhccCCChhhHHHHhhhcCC-hHHHHHhhccC-----C--------hhHHHHHHHH
Q 001833 637 IFMLFSLINLTGPNVQQRILQTFNALCRSPSAGNIKTTLTQCSA-IPVLVQLCEHD-----N--------ENVRANAVKL 702 (1008)
Q Consensus 637 i~~L~~ll~~~~~~v~~~al~aL~~L~~~~~~~~~~~~i~e~~~-i~~Lv~ll~~~-----~--------~~v~~~a~~~ 702 (1008)
...+.+.+++..+.+...+++.|..++....+...++.+..-+. .+.|-.++... + +.+|...+..
T Consensus 58 ~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~F 137 (330)
T PF11707_consen 58 LKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIRF 137 (330)
T ss_pred HHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHHH
Confidence 67778888888888888999999999985455666666666554 45666666322 1 2888888887
Q ss_pred HHHhccCCChhHHHhhhcc-cchHHHHHHhcCCCCHHHHHHHHHHHhc-CCC----ChhhHHHHHhcCCHHHHHHHhhCC
Q 001833 703 FCCLVDDGDEAIIREHVGQ-KCLETLVTIIQSSHNEEEIASAMGILSK-LPE----VPQFTQWLLDAGALPIVLNFLKNG 776 (1008)
Q Consensus 703 L~~Ls~~~~~~~~~~~~~~-~~i~~Lv~lL~~~~~~~v~~~a~~~L~n-L~~----~~~~~~~l~~~g~l~~Lv~lL~~~ 776 (1008)
+..+...+++.....++.. +.+..+..-|.. ++.++....+.+|.. +.. ....+..+....++..|..+....
T Consensus 138 ~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~-D~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn~~~L~~l~~Ly~~~ 216 (330)
T PF11707_consen 138 WLSFLSSGDPELKRDLLSQKKLMSALFKGLRK-DPPETVILILETLKDKVLKDSSVSRSTKCKLFNEWTLSQLASLYSRD 216 (330)
T ss_pred HHHHHccCCHHHHHHHHHcCchHHHHHhcccC-CCHHHHHHHHHHHHHHhccCCCCChhhhhhhcCHHHHHHHHHHhccc
Confidence 7666557777777777654 457777777777 566777777777763 333 455566777778888898877663
Q ss_pred CCCCCchhhHHHHHHHHHHHhcC
Q 001833 777 RQNDPNRFQVVENAVGALRRFTA 799 (1008)
Q Consensus 777 ~~~~~~~~~v~~~a~~aL~~L~~ 799 (1008)
.. .....+.+.+-..|..++.
T Consensus 217 ~~--~~~~~~~~~vh~fL~~lcT 237 (330)
T PF11707_consen 217 GE--DEKSSVADLVHEFLLALCT 237 (330)
T ss_pred CC--cccchHHHHHHHHHHHHhc
Confidence 21 1234777888888888776
No 296
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=73.91 E-value=3.4 Score=31.63 Aligned_cols=45 Identities=22% Similarity=0.370 Sum_probs=22.9
Q ss_pred cccccccccccCCceecc-Cc--ccccHHH-HHHHHhcCCCCCCCcCcc
Q 001833 265 SFYCPITRDVMVDPVETS-SG--QTFERSA-IEKWFSDGNNLCPLTMTV 309 (1008)
Q Consensus 265 ~~~cpi~~~~m~dpv~~~-~g--~t~~r~~-i~~w~~~~~~~cp~~~~~ 309 (1008)
.+.||||...|.-||=-. |- +.||-.. |+.....+.-.||.++++
T Consensus 2 sL~CPls~~~i~~P~Rg~~C~H~~CFDl~~fl~~~~~~~~W~CPiC~~~ 50 (50)
T PF02891_consen 2 SLRCPLSFQRIRIPVRGKNCKHLQCFDLESFLESNQRTPKWKCPICNKP 50 (50)
T ss_dssp ESB-TTTSSB-SSEEEETT--SS--EEHHHHHHHHHHS---B-TTT---
T ss_pred eeeCCCCCCEEEeCccCCcCcccceECHHHHHHHhhccCCeECcCCcCc
Confidence 378999999999999864 43 3577733 333333445579999764
No 297
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=73.85 E-value=1.3e+02 Score=32.24 Aligned_cols=179 Identities=14% Similarity=0.154 Sum_probs=106.6
Q ss_pred CCHHHHHHHhhCCCCCCCchhhHHHHHHHHHHHhcCCCC------HHHHHHHHHcCChHHHHHHhhcCC----hHHHHHH
Q 001833 764 GALPIVLNFLKNGRQNDPNRFQVVENAVGALRRFTAPTN------LEWQKRAAEAGVIPKLVQLLEYGT----TLTKEHA 833 (1008)
Q Consensus 764 g~l~~Lv~lL~~~~~~~~~~~~v~~~a~~aL~~L~~~~~------~~~~~~l~~~g~l~~Lv~lL~~~~----~~v~~~A 833 (1008)
|..+.+..++-.|- ..+...+.++..|..|+...+ .+.+-.+.-.+.+|.+..-+.+++ ......+
T Consensus 60 ~~f~Glq~Ll~KGL----~Ss~t~e~tl~lL~~L~~~~~~~lig~~~~rll~~~la~LP~ll~~~d~~~~i~~~~~~~~~ 135 (262)
T PF14225_consen 60 GNFEGLQPLLLKGL----RSSSTYELTLRLLSRLTPLPDDPLIGDSQSRLLFLLLALLPRLLHAFDDPNPIQPDQECIEI 135 (262)
T ss_pred CCchhHHHHHhCcc----CCCCcHHHHHHHHHHHhcCCCccccCCCCccHHHHHHHHHHHHHHHhcccccccccHHHHHH
Confidence 44445555544433 223456788888888876421 112333344566788888887777 2455677
Q ss_pred HHHHhhhhhcCCCCCCCCCCCCcccccCCCCCCcccccCcccCcccchhHhhccchHHHHHhhcCCC----hhhhHHHHH
Q 001833 834 ATSLARFSKNSLGLSRPIPKRKGFWCFSPPPEIGCQVHGGLCGIESSFCLLEANAVRPLVRVLEDPD----HGACEASLD 909 (1008)
Q Consensus 834 a~aL~nLs~~~~~l~~~~~~~~g~~~~~~~~~~~c~vh~~~c~~~~~~~l~~~g~i~~Lv~lL~~~d----~~v~~~al~ 909 (1008)
|..|+.++..... ..+..++.....+. .+....+..
T Consensus 136 A~~La~~a~~~~~----------------------------------------~~La~il~~ya~~~fr~~~dfl~~v~~ 175 (262)
T PF14225_consen 136 AEALAQVAEAQGL----------------------------------------PNLARILSSYAKGRFRDKDDFLSQVVS 175 (262)
T ss_pred HHHHHHHHHhCCC----------------------------------------ccHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 7888888832210 12333333333221 122223333
Q ss_pred HHHhhhcccccchhhHHHHhcCchHHHHHHhcCCChHHHHHHHHHHHHHhcChHHHHHhccccCchhhhhcccCCchhhH
Q 001833 910 ALVTLIEGERLQNGSKVLEDANAIDRMVRFLSSPSPKLQEKALDSVERIFRLPEFKQKYGKSAQMPLVDLTQRGNSSMKS 989 (1008)
Q Consensus 910 aL~~L~~~~~~~~~~~~i~~~~~i~~l~~ll~~~~~~l~~~a~~~L~~l~~~~~~~~~~~~~~~~~Lv~l~~~~~~~~~~ 989 (1008)
.|..-.-+ . .+...+..+..++.++.+-++..++.+|.-++...+.+..++.+-..+|.++++. +...
T Consensus 176 ~l~~~f~P----~-----~~~~~l~~Ll~lL~n~~~w~~~~~L~iL~~ll~~~d~~~~~~~dlispllrlL~t---~~~~ 243 (262)
T PF14225_consen 176 YLREAFFP----D-----HEFQILTFLLGLLENGPPWLRRKTLQILKVLLPHVDMRSPHGADLISPLLRLLQT---DLWM 243 (262)
T ss_pred HHHHHhCc----h-----hHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhccccCCCCcchHHHHHHHHHhCC---ccHH
Confidence 33332100 0 1234467788999899999999999999999999998877776667788888876 3344
Q ss_pred HHHHHHHHH
Q 001833 990 LSARVLAHL 998 (1008)
Q Consensus 990 ~Aa~~L~~L 998 (1008)
.|-.+|...
T Consensus 244 eAL~VLd~~ 252 (262)
T PF14225_consen 244 EALEVLDEI 252 (262)
T ss_pred HHHHHHHHH
Confidence 555555543
No 298
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=73.35 E-value=96 Score=33.28 Aligned_cols=210 Identities=17% Similarity=0.142 Sum_probs=119.8
Q ss_pred hhhhccCcchHHHHHHHHHHHHHHhhchhhhhhHhhcCchHHHHHHHcC--CCHHHHHHHHHHHHHhccCChhhHHHhhc
Q 001833 340 MKPKLVSTEVEEVLHCLEQLQDLCQQRDQHREWVILENYIPKLIYLLGS--KNRDVRNRALIILHILVKDSNDTKERLAN 417 (1008)
Q Consensus 340 ~~~~l~~~~~~~~~~al~~L~~l~~~~~~~r~~i~~~g~i~~L~~lL~s--~~~~~~~~Al~~L~~Ls~~~~~~k~~i~~ 417 (1008)
+.+-+.++++..+.+|+.-|......-+... + ...-+..|+.++.+ .|...-..|+..+..|.....-.
T Consensus 4 Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~--L-~~~ev~~L~~F~~~rl~D~~~~~~~l~gl~~L~~~~~~~------ 74 (262)
T PF14500_consen 4 LGEYLTSEDPIIRAKALELLSEVLERLPPDF--L-SRQEVQVLLDFFCSRLDDHACVQPALKGLLALVKMKNFS------ 74 (262)
T ss_pred hhhhhCCCCHHHHHHHHHHHHHHHHhCCHhh--c-cHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHhCcCCC------
Confidence 4455677788888888888776665444321 1 12236777777654 35555555677777776443111
Q ss_pred cCCcHHHHHHHhcc-------ChhHHHHHHHHHHHhccCc-hhhHHhhcccchHHHHHHHhcC-CChHHHHHHHHHHHhh
Q 001833 418 GDDAVESIVRSLGR-------RIEERKLAVALLLELSTCN-TLRDQIGDVQGCILLLVTMASS-DDNQASRDAQELLENL 488 (1008)
Q Consensus 418 ~~g~i~~Lv~~L~~-------~~~~~~~A~~~L~~Ls~~~-~~~~~i~~~~g~i~~Lv~lL~~-~~~~~~~~a~~aL~~L 488 (1008)
.+....+++.+.. ....|.....+|..|..+. +.-..++ .+.+..++++..+ .||+....+...+..+
T Consensus 75 -~~~~~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~--~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i 151 (262)
T PF14500_consen 75 -PESAVKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSMG--DDFVYGFIQLIDGEKDPRNLLLSFKLLKVI 151 (262)
T ss_pred -hhhHHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhch--hHHHHHHHHHhccCCCHHHHHHHHHHHHHH
Confidence 1223333333322 1244666677777765432 2223333 3577788888875 5999888888777766
Q ss_pred cCCcccHHHHHhcCcHHHHHHHHhc--------C--CH--HHHHHHHHHHHHH-cCChhhHHHHhhcCcHHHHHHHhccC
Q 001833 489 SFSDDNVVQMAKANYFKHLLQRLSA--------G--PE--SVKMRMATTLAEM-ELTDHHKASLLEGNVLGPLLHLVSRG 555 (1008)
Q Consensus 489 s~~~~n~~~i~~~g~v~~Lv~~L~~--------~--~~--~~~~~aa~~L~~L-s~~~~~k~~i~~~g~i~~Lv~lL~~~ 555 (1008)
...-+. ....+.+.+.+.. + ++ -.++.-...|.+. +.++ ....-++|.|++-|.+.
T Consensus 152 ~~~~~~------~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~-----~fa~~~~p~LleKL~s~ 220 (262)
T PF14500_consen 152 LQEFDI------SEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTP-----LFAPFAFPLLLEKLDST 220 (262)
T ss_pred HHhccc------chhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcH-----hhHHHHHHHHHHHHcCC
Confidence 432221 2333444444321 1 11 1233333333332 2222 22245789999999999
Q ss_pred CHHHHHHHHHHHHHhhC
Q 001833 556 DIQMKKVAVKALRNLSS 572 (1008)
Q Consensus 556 ~~~~~~~A~~aL~~L~~ 572 (1008)
++.+|..++.+|..++.
T Consensus 221 ~~~~K~D~L~tL~~c~~ 237 (262)
T PF14500_consen 221 SPSVKLDSLQTLKACIE 237 (262)
T ss_pred CcHHHHHHHHHHHHHHH
Confidence 99999999999998875
No 299
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=72.83 E-value=38 Score=36.48 Aligned_cols=160 Identities=22% Similarity=0.187 Sum_probs=97.1
Q ss_pred HHHHHh-ccChhHHHHHHHHHHHhccCchhhHHhhcccch-HHHHHHHhc----CCChHHHHHHHHHHHhhcCCcccHHH
Q 001833 424 SIVRSL-GRRIEERKLAVALLLELSTCNTLRDQIGDVQGC-ILLLVTMAS----SDDNQASRDAQELLENLSFSDDNVVQ 497 (1008)
Q Consensus 424 ~Lv~~L-~~~~~~~~~A~~~L~~Ls~~~~~~~~i~~~~g~-i~~Lv~lL~----~~~~~~~~~a~~aL~~Ls~~~~n~~~ 497 (1008)
.+.+++ ..+.+.+--+.-+++-+..++.....+....+. ...+..++. +..+..+..+++++.|+-.+...+..
T Consensus 67 ~~~~~~~~Wp~~~~fP~lDLlRl~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ml~lR~l~NlF~~~~~~~~ 146 (268)
T PF08324_consen 67 LLLKILLSWPPESRFPALDLLRLAALHPPASDLLASEDSGIADLLSTLISSGSSSSPPANQMLALRLLANLFSHPPGRQL 146 (268)
T ss_dssp HHHHHHCCS-CCC-HHHHHHHHHHCCCHCHHHHHHSTTTH-HHHHHHHHHCCTTTSSHHHHHHHHHHHHHHTTSCCCHHH
T ss_pred HHHHHHHhCCCccchhHHhHHHHHHhCccHHHHHhccccchHHHHHHHHHhccCCCcHHHHHHHHHHHHHhhCCCccHHH
Confidence 334443 334455666677777777777665555443333 445555544 24677888899999999988888877
Q ss_pred HHhcCc--HHHHHHHHhcC----CHHHHHHHHHHHHHHcCChhhHH--HHhhcCcHHHHHHHhcc--CCHHHHHHHHHHH
Q 001833 498 MAKANY--FKHLLQRLSAG----PESVKMRMATTLAEMELTDHHKA--SLLEGNVLGPLLHLVSR--GDIQMKKVAVKAL 567 (1008)
Q Consensus 498 i~~~g~--v~~Lv~~L~~~----~~~~~~~aa~~L~~Ls~~~~~k~--~i~~~g~i~~Lv~lL~~--~~~~~~~~A~~aL 567 (1008)
+..... +-..+..+... +..++..++..+.|++..-.... .-.....+..+++.+.. .+++....++-||
T Consensus 147 ~~~~~~~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~ll~~i~~~~~~~~~d~Ea~~R~LvAl 226 (268)
T PF08324_consen 147 LLSHFDSSILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSELLSSIIEVLSREESDEEALYRLLVAL 226 (268)
T ss_dssp HHCTHHTCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHHHHHHHHHHCHCCHTSHHHHHHHHHHH
T ss_pred HHhcccchHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccccCCHHHHHHHHHHH
Confidence 765432 33333333333 46678888888899854321111 00111245556664332 4889999999999
Q ss_pred HHhhCCCchhHHHHhc
Q 001833 568 RNLSSVPQNGLQMIKE 583 (1008)
Q Consensus 568 ~~L~~~~~~~~~i~~~ 583 (1008)
++|...+.......+.
T Consensus 227 GtL~~~~~~~~~~~~~ 242 (268)
T PF08324_consen 227 GTLLSSSDSAKQLAKS 242 (268)
T ss_dssp HHHHCCSHHHHHHCCC
T ss_pred HHHhccChhHHHHHHH
Confidence 9999766666666553
No 300
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=72.14 E-value=34 Score=39.83 Aligned_cols=104 Identities=17% Similarity=0.207 Sum_probs=70.5
Q ss_pred CCHHHHHHHhhCCCCCCCchhhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHHHhhcCChHHHHHHHHHHhhhhhc
Q 001833 764 GALPIVLNFLKNGRQNDPNRFQVVENAVGALRRFTAPTNLEWQKRAAEAGVIPKLVQLLEYGTTLTKEHAATSLARFSKN 843 (1008)
Q Consensus 764 g~l~~Lv~lL~~~~~~~~~~~~v~~~a~~aL~~L~~~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~v~~~Aa~aL~nLs~~ 843 (1008)
|.+..++.-+.+ ++..+|..++..|+.+... -.+ .......|++..|.+-+-+..+.||..|..+|+.+-..
T Consensus 91 ~~~~h~lRg~es------kdk~VR~r~lqila~~~d~-v~e-IDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~ 162 (885)
T COG5218 91 GTFYHLLRGTES------KDKKVRKRSLQILALLSDV-VRE-IDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEM 162 (885)
T ss_pred HHHHHHHhcccC------cchhHHHHHHHHHHHHHHh-cch-HHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhc
Confidence 444555555555 6788999999999998864 222 22344467777777777788899999999999998643
Q ss_pred CCCCCCCCCCCCcccccCCCCCCcccccCcccCcccchhHhhccchHHHHHhhc-CCChhhhHHHHHHHHhhh
Q 001833 844 SLGLSRPIPKRKGFWCFSPPPEIGCQVHGGLCGIESSFCLLEANAVRPLVRVLE-DPDHGACEASLDALVTLI 915 (1008)
Q Consensus 844 ~~~l~~~~~~~~g~~~~~~~~~~~c~vh~~~c~~~~~~~l~~~g~i~~Lv~lL~-~~d~~v~~~al~aL~~L~ 915 (1008)
+.+ . +...+..|+.+++ ++..+||..| |.|+.
T Consensus 163 ~~n------------------------------e-------en~~~n~l~~~vqnDPS~EVRr~a---llni~ 195 (885)
T COG5218 163 ELN------------------------------E-------ENRIVNLLKDIVQNDPSDEVRRLA---LLNIS 195 (885)
T ss_pred cCC------------------------------h-------HHHHHHHHHHHHhcCcHHHHHHHH---HHHee
Confidence 322 1 1123556667776 5677888755 66776
No 301
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=69.82 E-value=85 Score=38.50 Aligned_cols=210 Identities=17% Similarity=0.180 Sum_probs=107.9
Q ss_pred hHHHHHHHcCCCHHHHHHHHHHHHHhccCChhhHHHhhcc------CCcHHHHHHHhccChhHHHHHHHHHHHhccCc-h
Q 001833 379 IPKLIYLLGSKNRDVRNRALIILHILVKDSNDTKERLANG------DDAVESIVRSLGRRIEERKLAVALLLELSTCN-T 451 (1008)
Q Consensus 379 i~~L~~lL~s~~~~~~~~Al~~L~~Ls~~~~~~k~~i~~~------~g~i~~Lv~~L~~~~~~~~~A~~~L~~Ls~~~-~ 451 (1008)
+-.|+.+|+.-+.+.-.....-+..-. .....+..+.+. ..++..+.+.+..+.-.-..|+..|..|.... .
T Consensus 349 f~~Lv~~lr~l~~~~L~~l~~~~~~~~-~~~~~r~~~lDal~~aGT~~av~~i~~~I~~~~~~~~ea~~~l~~l~~~~~~ 427 (618)
T PF01347_consen 349 FSRLVRLLRTLSYEDLEELYKQLKSKS-KKEQARKIFLDALPQAGTNPAVKFIKDLIKSKKLTDDEAAQLLASLPFHVRR 427 (618)
T ss_dssp HHHHHHHHTTS-HHHHHHHHHHHTTS----HHHHHHHHHHHHHH-SHHHHHHHHHHHHTT-S-HHHHHHHHHHHHHT---
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhc-cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhhcCC
Confidence 556777777655443333322222111 112233333221 23455666666554333344555565553321 1
Q ss_pred hhHHhhcccchHHHHHHHhcC----CChHHHHHHHHHHHhh----cCCc------ccHHHHHhcCcHHHHHHHHh----c
Q 001833 452 LRDQIGDVQGCILLLVTMASS----DDNQASRDAQELLENL----SFSD------DNVVQMAKANYFKHLLQRLS----A 513 (1008)
Q Consensus 452 ~~~~i~~~~g~i~~Lv~lL~~----~~~~~~~~a~~aL~~L----s~~~------~n~~~i~~~g~v~~Lv~~L~----~ 513 (1008)
- ....+..+..++++ .++.+...|+.++..| |... ......+...+++.+...|. .
T Consensus 428 P------t~e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 501 (618)
T PF01347_consen 428 P------TEELLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSR 501 (618)
T ss_dssp --------HHHHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT-----------SS--GGGTHHHHHHHHHHHHT
T ss_pred C------CHHHHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeecccccccccccchhhHHHHHHHHHHHHHHHhhc
Confidence 1 02334445555543 3556666666666666 3332 12222233455666665554 4
Q ss_pred CCHHHHHHHHHHHHHHcCChhhHHHHhhcCcHHHHHHHhccC---CHHHHHHHHHHHHHhhCCCchhHHHHhcCChHHHH
Q 001833 514 GPESVKMRMATTLAEMELTDHHKASLLEGNVLGPLLHLVSRG---DIQMKKVAVKALRNLSSVPQNGLQMIKEGAVGPLV 590 (1008)
Q Consensus 514 ~~~~~~~~aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~---~~~~~~~A~~aL~~L~~~~~~~~~i~~~G~v~~Ll 590 (1008)
++.+.+..++.+|+|+. ....++.|...+... +..+|..|++||..+..... . -+.+.|+
T Consensus 502 ~~~~~~~~~LkaLgN~g----------~~~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~~---~----~v~~~l~ 564 (618)
T PF01347_consen 502 GDEEEKIVYLKALGNLG----------HPESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHCP---E----KVREILL 564 (618)
T ss_dssp T-HHHHHHHHHHHHHHT-----------GGGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT-H---H----HHHHHHH
T ss_pred cCHHHHHHHHHHhhccC----------CchhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcCc---H----HHHHHHH
Confidence 45677788899999853 355788888888766 67889999999988754211 1 1346788
Q ss_pred HHhcccCCCCcchHHHHHHHHHH
Q 001833 591 DLLLHHSSSSSSLREETATAIMH 613 (1008)
Q Consensus 591 ~ll~~~~~~~~~~~~~a~~~L~n 613 (1008)
.++.+...+ .+++-.|..+|..
T Consensus 565 ~I~~n~~e~-~EvRiaA~~~lm~ 586 (618)
T PF01347_consen 565 PIFMNTTED-PEVRIAAYLILMR 586 (618)
T ss_dssp HHHH-TTS--HHHHHHHHHHHHH
T ss_pred HHhcCCCCC-hhHHHHHHHHHHh
Confidence 888776654 6777777666654
No 302
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=69.49 E-value=12 Score=43.98 Aligned_cols=118 Identities=15% Similarity=0.115 Sum_probs=77.0
Q ss_pred hHHHHHhhcCCChhhhHHHHHHHHhhh-cccccchhhHHHHh--cCchHHHHHHhcCCChHHHHHHHHHHHHHhcChHHH
Q 001833 889 VRPLVRVLEDPDHGACEASLDALVTLI-EGERLQNGSKVLED--ANAIDRMVRFLSSPSPKLQEKALDSVERIFRLPEFK 965 (1008)
Q Consensus 889 i~~Lv~lL~~~d~~v~~~al~aL~~L~-~~~~~~~~~~~i~~--~~~i~~l~~ll~~~~~~l~~~a~~~L~~l~~~~~~~ 965 (1008)
...++.+|.+.....|.+.+.++.|++ +-....+......+ ...+..+.+-+.+.+|..|.+|+..+.++|..+..-
T Consensus 301 ~~~~~~LLdses~tlRc~~~EicaN~V~~~~~d~qm~e~~~~~~~~Lv~ll~ERl~D~~py~RtKalqv~~kifdl~sk~ 380 (1128)
T COG5098 301 YEHFDELLDSESFTLRCCFLEICANLVEHFKKDGQMVEHYKQKLNDLVGLLVERLSDTYPYTRTKALQVLEKIFDLNSKT 380 (1128)
T ss_pred HHHHHHHhcccchhHHHHHHHHHHHHHHHHhcchhhHhhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHhCcccc
Confidence 456778999999999999999999998 22111111110000 112444555557889999999999999998765321
Q ss_pred HHhccccCchhhhhcccCCchhhHHHHHHHHHHhccccCCC
Q 001833 966 QKYGKSAQMPLVDLTQRGNSSMKSLSARVLAHLNVLQDQSS 1006 (1008)
Q Consensus 966 ~~~~~~~~~~Lv~l~~~~~~~~~~~Aa~~L~~L~~~~~~s~ 1006 (1008)
..-........+..+++.+..+|+.|-+.+..|-.-+-+++
T Consensus 381 ~~~r~ev~~lv~r~lqDrss~VRrnaikl~SkLL~~HPF~~ 421 (1128)
T COG5098 381 VGRRHEVIRLVGRRLQDRSSVVRRNAIKLCSKLLMRHPFAS 421 (1128)
T ss_pred cchHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhcCChhh
Confidence 00000012335567888899999999999988766665543
No 303
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=69.45 E-value=9 Score=39.62 Aligned_cols=83 Identities=17% Similarity=0.131 Sum_probs=60.1
Q ss_pred HHHHHHHHHhcCCCChhhHHHHHhcC-------CHHHHHHHhhCCCCCCCchhhHHHHHHHHHHHhcCCCCHHHH-HHHH
Q 001833 739 EIASAMGILSKLPEVPQFTQWLLDAG-------ALPIVLNFLKNGRQNDPNRFQVVENAVGALRRFTAPTNLEWQ-KRAA 810 (1008)
Q Consensus 739 v~~~a~~~L~nL~~~~~~~~~l~~~g-------~l~~Lv~lL~~~~~~~~~~~~v~~~a~~aL~~L~~~~~~~~~-~~l~ 810 (1008)
-+.-|+.+|+.|+-.+.+...++..+ .+..|++++... .++..||.|+..|.+|+.+ +.... ....
T Consensus 140 PqrlaLEaLcKLsV~e~NVDliLaTpp~sRlE~l~~~L~r~l~~~-----e~~v~REfAvvlL~~La~~-~~~~~r~iA~ 213 (257)
T PF12031_consen 140 PQRLALEALCKLSVIENNVDLILATPPFSRLERLFHTLVRLLGMR-----EDQVCREFAVVLLSNLAQG-DEAAARAIAM 213 (257)
T ss_pred HHHHHHHHHHHhheeccCcceeeeCCCHHHHHHHHHHHHHHhccc-----cchhHHHHHHHHHHHHhcc-cHHHHHHHHH
Confidence 35668888888877555555555444 345566666653 5788999999999999998 45544 5556
Q ss_pred HcCChHHHHHHhhcCCh
Q 001833 811 EAGVIPKLVQLLEYGTT 827 (1008)
Q Consensus 811 ~~g~l~~Lv~lL~~~~~ 827 (1008)
+.+.+..|+..+.+...
T Consensus 214 q~~~i~~Li~FiE~a~~ 230 (257)
T PF12031_consen 214 QKPCISHLIAFIEDAEQ 230 (257)
T ss_pred hhchHHHHHHHHHHHHH
Confidence 78999999999987654
No 304
>PF04641 Rtf2: Rtf2 RING-finger
Probab=68.79 E-value=5.2 Score=42.91 Aligned_cols=36 Identities=19% Similarity=0.480 Sum_probs=31.8
Q ss_pred ccccccccccccCCceec-cCcccccHHHHHHHHhcC
Q 001833 264 QSFYCPITRDVMVDPVET-SSGQTFERSAIEKWFSDG 299 (1008)
Q Consensus 264 ~~~~cpi~~~~m~dpv~~-~~g~t~~r~~i~~w~~~~ 299 (1008)
..+.|+||++.+.+||+. .-|+-|.+.+|-+|+-..
T Consensus 33 ~w~~CaLS~~pL~~PiV~d~~G~LynKeaile~Ll~~ 69 (260)
T PF04641_consen 33 RWTHCALSQQPLEDPIVSDRLGRLYNKEAILEFLLDK 69 (260)
T ss_pred CcCcccCcCCccCCCeeeCCCCeeEcHHHHHHHHHhc
Confidence 578999999999999975 479999999999999643
No 305
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=68.78 E-value=89 Score=37.69 Aligned_cols=134 Identities=17% Similarity=0.147 Sum_probs=89.8
Q ss_pred CChHHHHHhhccCChhHHHHHHHHHHHhccCCChhHHHhhhcccchHHHHHHhcCCCCHHHHHHHHHHHhcCCCChhhHH
Q 001833 679 SAIPVLVQLCEHDNENVRANAVKLFCCLVDDGDEAIIREHVGQKCLETLVTIIQSSHNEEEIASAMGILSKLPEVPQFTQ 758 (1008)
Q Consensus 679 ~~i~~Lv~ll~~~~~~v~~~a~~~L~~Ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~v~~~a~~~L~nL~~~~~~~~ 758 (1008)
.++|.|..-+++.+..++..++..+...++.-+ ...++...+|.|-++.....+..++..++.+++.+..
T Consensus 389 ~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD----~~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q------ 458 (700)
T KOG2137|consen 389 KILPLLYRSLEDSDVQIQELALQILPTVAESID----VPFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQ------ 458 (700)
T ss_pred HHHHHHHHHhcCcchhhHHHHHHhhhHHHHhcc----HHHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHHH------
Confidence 457777777888888999999998888763322 2234556788888886666778899999999988872
Q ss_pred HHHhcCCHHHHHHHhhCCCCCCCchhhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHHHhhcCCh
Q 001833 759 WLLDAGALPIVLNFLKNGRQNDPNRFQVVENAVGALRRFTAPTNLEWQKRAAEAGVIPKLVQLLEYGTT 827 (1008)
Q Consensus 759 ~l~~~g~l~~Lv~lL~~~~~~~~~~~~v~~~a~~aL~~L~~~~~~~~~~~l~~~g~l~~Lv~lL~~~~~ 827 (1008)
.+-...+++.+.-+++.-. ..++.+.-..+.+..++... .+.. ..+..+.++|.++-+...+.-
T Consensus 459 ~lD~~~v~d~~lpi~~~~~---~~dp~iv~~~~~i~~~l~~~-~~~g-~ev~~~~VlPlli~ls~~~~L 522 (700)
T KOG2137|consen 459 RLDKAAVLDELLPILKCIK---TRDPAIVMGFLRIYEALALI-IYSG-VEVMAENVLPLLIPLSVAPSL 522 (700)
T ss_pred HHHHHHhHHHHHHHHHHhc---CCCcHHHHHHHHHHHHHHhh-cccc-eeeehhhhhhhhhhhhhcccc
Confidence 2223334444444444311 05678888888888887763 2222 455667788988888876653
No 306
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=68.45 E-value=2.5e+02 Score=33.08 Aligned_cols=233 Identities=16% Similarity=0.084 Sum_probs=107.8
Q ss_pred ChHHHHHHHHHHHhhcCCcccHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHHcCChhhHHHHhhcCcHHHHHHHhc
Q 001833 474 DNQASRDAQELLENLSFSDDNVVQMAKANYFKHLLQRLSAGPESVKMRMATTLAEMELTDHHKASLLEGNVLGPLLHLVS 553 (1008)
Q Consensus 474 ~~~~~~~a~~aL~~Ls~~~~n~~~i~~~g~v~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~ 553 (1008)
.++++..+...|..+...+.......+.-....+ -....++.-..-+.+|..|+.+...- ...+.+..+.|...|.
T Consensus 42 p~e~R~~~~~ll~~~i~~~~~~~~~~R~~fF~~I---~~~~~~~d~~~~l~aL~~LT~~Grdi-~~~~~~i~~~L~~wl~ 117 (464)
T PF11864_consen 42 PSEARRAALELLIACIKRQDSSSGLMRAEFFRDI---SDPSNDDDFDLRLEALIALTDNGRDI-DFFEYEIGPFLLSWLE 117 (464)
T ss_pred CHHHHHHHHHHHHHHHHccccccHHHHHHHHHHH---hcCCCchhHHHHHHHHHHHHcCCcCc-hhcccchHHHHHHHHH
Confidence 4467777777777776555443223332222222 11223332333344444444333222 2235666677766663
Q ss_pred cCC---------------------------HHHHHHHHHHHHHhhCCCch-hHHHHhcCChHHHHHHhcccCCCCcchHH
Q 001833 554 RGD---------------------------IQMKKVAVKALRNLSSVPQN-GLQMIKEGAVGPLVDLLLHHSSSSSSLRE 605 (1008)
Q Consensus 554 ~~~---------------------------~~~~~~A~~aL~~L~~~~~~-~~~i~~~G~v~~Ll~ll~~~~~~~~~~~~ 605 (1008)
..- ...-...+..+.|+.....+ -+.-.-.+.+..++.+....+. ....+
T Consensus 118 ~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~nviKfn~~~l~e~~i~~lv~~i~~iC~~Ts~--~~di~ 195 (464)
T PF11864_consen 118 PSYQAARSARRKAKKSSSSKSKGLSNLDNEESNLSDLLQFLVNVIKFNFNYLDEDEISSLVDQICTICKSTSS--EDDIE 195 (464)
T ss_pred HHHHHHHHHHHHhhccccccccccccccchhhhHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhccCc--HHHHH
Confidence 211 11112233333444432211 1111122345555555433222 23345
Q ss_pred HHHHHHHHHhccccccccCCcccccccchhHHHHHHHhhcc--CChHHHHHHHHHHHHhccCCChhhHHHHhhhcCChHH
Q 001833 606 ETATAIMHLAVSTMYQESSQTPVTLLESDKEIFMLFSLINL--TGPNVQQRILQTFNALCRSPSAGNIKTTLTQCSAIPV 683 (1008)
Q Consensus 606 ~a~~~L~nLa~~~~~~~~~~~~~~~l~~~~~i~~L~~ll~~--~~~~v~~~al~aL~~L~~~~~~~~~~~~i~e~~~i~~ 683 (1008)
.+..++-.+...+.... +.+..++..|-+ ........+-+++.||+++.... .++..
T Consensus 196 ~~L~vldaii~y~~iP~------------~sl~~~i~vLCsi~~~~~l~~~~w~~m~nL~~S~~g~---------~~i~~ 254 (464)
T PF11864_consen 196 ACLSVLDAIITYGDIPS------------ESLSPCIEVLCSIVNSVSLCKPSWRTMRNLLKSHLGH---------SAIRT 254 (464)
T ss_pred HHHHHHHHHHHcCcCCh------------HHHHHHHHHHhhHhcccccchhHHHHHHHHHcCccHH---------HHHHH
Confidence 66666666554332221 233333333331 22355666777888888754332 24777
Q ss_pred HHHhhccC------ChhHHHHHHHHHHHhccCCC-hhHHHhhhccc--chHHHHHHhcCC
Q 001833 684 LVQLCEHD------NENVRANAVKLFCCLVDDGD-EAIIREHVGQK--CLETLVTIIQSS 734 (1008)
Q Consensus 684 Lv~ll~~~------~~~v~~~a~~~L~~Ls~~~~-~~~~~~~~~~~--~i~~Lv~lL~~~ 734 (1008)
|..+|.++ +..+...|+..+..+. .+. .+....+--.- .++.|...++..
T Consensus 255 L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll-~~~~~~~~~~l~~~~~~vl~sl~~al~~~ 313 (464)
T PF11864_consen 255 LCDILRSPDPQNKRDINVLRGAVFFLRMLL-WGSGEQGYPSLPFSPSSVLPSLLNALKSN 313 (464)
T ss_pred HHHHHcccCccccccHHHHhhHHHHHHHHH-hccccCCcceecccHHHHHHHHHHHHhCC
Confidence 88888322 3455667888887776 333 12222221112 666777777654
No 307
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=68.08 E-value=2.6e+02 Score=33.26 Aligned_cols=77 Identities=14% Similarity=0.161 Sum_probs=52.9
Q ss_pred cchhhHHHHHHHHHhHHHHHHHHhcCCCCCcHhHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHhhhH----HHHHHHHH
Q 001833 38 IKKESFKELAAYLERIVPVLKELNKRDLSHSEGLNSAIEILNREIKGAKELTTECSKRNKVYLLMNCR----AIVKRLKD 113 (1008)
Q Consensus 38 ~~~~~~~~l~r~~~ll~~lleel~~~~~~~~~~~~~~l~~L~~~l~~a~~Ll~~c~~~Skl~l~~~~~----~~~~~~~~ 113 (1008)
-.+++-++..+++.+|.-=++||-..++... =...|.+-+.-|..+..|.+.|+.. |-++.++ ++...+..
T Consensus 175 ~~~~~~~e~~~~~d~L~fq~~Ele~~~l~~g--E~e~L~~e~~rLsn~ekl~~~~~~a---~~~L~ge~~~~~~~~~l~~ 249 (557)
T COG0497 175 DLQEKERERAQRADLLQFQLEELEELNLQPG--EDEELEEERKRLSNSEKLAEAIQNA---LELLSGEDDTVSALSLLGR 249 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCc--hHHHHHHHHHHHhhHHHHHHHHHHH---HHHHhCCCCchhHHHHHHH
Confidence 4456778899999999999999987765333 3677788888888888888887543 4555432 35555554
Q ss_pred HHHHHH
Q 001833 114 TAREIS 119 (1008)
Q Consensus 114 ~~~~~~ 119 (1008)
....+.
T Consensus 250 a~~~l~ 255 (557)
T COG0497 250 ALEALE 255 (557)
T ss_pred HHHHHH
Confidence 444443
No 308
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=66.49 E-value=2.5e+02 Score=32.35 Aligned_cols=30 Identities=20% Similarity=0.169 Sum_probs=22.6
Q ss_pred CCHHHHHHHhhCCCCCCCchhhHHHHHHHHHHHhcC
Q 001833 764 GALPIVLNFLKNGRQNDPNRFQVVENAVGALRRFTA 799 (1008)
Q Consensus 764 g~l~~Lv~lL~~~~~~~~~~~~v~~~a~~aL~~L~~ 799 (1008)
.+.|.+++.-.+ .+..+|+.++.+|..+..
T Consensus 448 diaP~~iqay~S------~SS~VRKtaVfCLVamv~ 477 (516)
T KOG2956|consen 448 DIAPCVIQAYDS------TSSTVRKTAVFCLVAMVN 477 (516)
T ss_pred hhhhHHHHHhcC------chHHhhhhHHHhHHHHHH
Confidence 456777777777 677888888888887764
No 309
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=66.42 E-value=14 Score=38.22 Aligned_cols=80 Identities=21% Similarity=0.238 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHHhccCChhhHHHhhccCCcH---HHHHHHh----cc--ChhHHHHHHHHHHHhccCc-hhhHHhhcccc
Q 001833 392 DVRNRALIILHILVKDSNDTKERLANGDDAV---ESIVRSL----GR--RIEERKLAVALLLELSTCN-TLRDQIGDVQG 461 (1008)
Q Consensus 392 ~~~~~Al~~L~~Ls~~~~~~k~~i~~~~g~i---~~Lv~~L----~~--~~~~~~~A~~~L~~Ls~~~-~~~~~i~~~~g 461 (1008)
.-|+.|+.+|+.|+..+ .|-+.|.. .+-. +.++..| .. +.-.|+-|+.+|.+|+..+ .....++...+
T Consensus 139 SPqrlaLEaLcKLsV~e-~NVDliLa-Tpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~ 216 (257)
T PF12031_consen 139 SPQRLALEALCKLSVIE-NNVDLILA-TPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKP 216 (257)
T ss_pred CHHHHHHHHHHHhheec-cCcceeee-CCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhc
Confidence 46899999999999988 88888877 5543 3344444 33 2345899999999999855 46667887789
Q ss_pred hHHHHHHHhcCC
Q 001833 462 CILLLVTMASSD 473 (1008)
Q Consensus 462 ~i~~Lv~lL~~~ 473 (1008)
+|..|+..+...
T Consensus 217 ~i~~Li~FiE~a 228 (257)
T PF12031_consen 217 CISHLIAFIEDA 228 (257)
T ss_pred hHHHHHHHHHHH
Confidence 999999988643
No 310
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=66.18 E-value=3.1 Score=45.17 Aligned_cols=49 Identities=16% Similarity=0.312 Sum_probs=41.5
Q ss_pred cccccccccCCceeccCcccccHHHHHHHHhc-CCCCCCCcCccCCCCCC
Q 001833 267 YCPITRDVMVDPVETSSGQTFERSAIEKWFSD-GNNLCPLTMTVLDTSIL 315 (1008)
Q Consensus 267 ~cpi~~~~m~dpv~~~~g~t~~r~~i~~w~~~-~~~~cp~~~~~l~~~~l 315 (1008)
.|-||-|=-+|--|=+|||-.|-.|+..|-+. +..+||.|+-.+..++-
T Consensus 371 LCKICaendKdvkIEPCGHLlCt~CLa~WQ~sd~gq~CPFCRcEIKGte~ 420 (563)
T KOG1785|consen 371 LCKICAENDKDVKIEPCGHLLCTSCLAAWQDSDEGQTCPFCRCEIKGTEP 420 (563)
T ss_pred HHHHhhccCCCcccccccchHHHHHHHhhcccCCCCCCCceeeEeccccc
Confidence 57899999999999999999999999999863 47789999877665443
No 311
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=65.56 E-value=40 Score=36.29 Aligned_cols=156 Identities=18% Similarity=0.148 Sum_probs=95.5
Q ss_pred hHHHHHHHhcCCChHHHHHHHHHHHhhcCCcccHHHHHhcC--cHHHHHHHHhcC----CHHHHHHHHHHHHHHcCChhh
Q 001833 462 CILLLVTMASSDDNQASRDAQELLENLSFSDDNVVQMAKAN--YFKHLLQRLSAG----PESVKMRMATTLAEMELTDHH 535 (1008)
Q Consensus 462 ~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~~~n~~~i~~~g--~v~~Lv~~L~~~----~~~~~~~aa~~L~~Ls~~~~~ 535 (1008)
.+..+..++.+..++.+.-++..++-+..++..-..+...+ ....+...+..+ ++..+..++++++|+-.+..+
T Consensus 64 ~~~~~~~~~~~Wp~~~~fP~lDLlRl~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ml~lR~l~NlF~~~~~ 143 (268)
T PF08324_consen 64 WLILLLKILLSWPPESRFPALDLLRLAALHPPASDLLASEDSGIADLLSTLISSGSSSSPPANQMLALRLLANLFSHPPG 143 (268)
T ss_dssp HHHHHHHHHCCS-CCC-HHHHHHHHHHCCCHCHHHHHHSTTTH-HHHHHHHHHCCTTTSSHHHHHHHHHHHHHHTTSCCC
T ss_pred HHHHHHHHHHhCCCccchhHHhHHHHHHhCccHHHHHhccccchHHHHHHHHHhccCCCcHHHHHHHHHHHHHhhCCCcc
Confidence 34556666666666667777887777777776655554443 244455554433 567788899999999888888
Q ss_pred HHHHhhcC--cHHHHHHHhccC----CHHHHHHHHHHHHHhhCC-Cchh-HHHHhcCChHHHHHHhcccCCCCcchHHHH
Q 001833 536 KASLLEGN--VLGPLLHLVSRG----DIQMKKVAVKALRNLSSV-PQNG-LQMIKEGAVGPLVDLLLHHSSSSSSLREET 607 (1008)
Q Consensus 536 k~~i~~~g--~i~~Lv~lL~~~----~~~~~~~A~~aL~~L~~~-~~~~-~~i~~~G~v~~Ll~ll~~~~~~~~~~~~~a 607 (1008)
+..+.+.. .+...+..+... +..++..++..+.|++.. ..++ ..-.+...+..+++.+..... +++....+
T Consensus 144 ~~~~~~~~~~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~ll~~i~~~~~~~~~-d~Ea~~R~ 222 (268)
T PF08324_consen 144 RQLLLSHFDSSILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSELLSSIIEVLSREES-DEEALYRL 222 (268)
T ss_dssp HHHHHCTHHTCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHHHHHHHHHHCHCCHT-SHHHHHHH
T ss_pred HHHHHhcccchHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccccC-CHHHHHHH
Confidence 87666543 344444434333 678889999999999831 1111 111111234555554332222 27889999
Q ss_pred HHHHHHHhccc
Q 001833 608 ATAIMHLAVST 618 (1008)
Q Consensus 608 ~~~L~nLa~~~ 618 (1008)
+-+|++|...+
T Consensus 223 LvAlGtL~~~~ 233 (268)
T PF08324_consen 223 LVALGTLLSSS 233 (268)
T ss_dssp HHHHHHHHCCS
T ss_pred HHHHHHHhccC
Confidence 99999998644
No 312
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=65.54 E-value=60 Score=38.65 Aligned_cols=129 Identities=13% Similarity=0.154 Sum_probs=89.6
Q ss_pred CChHHHHHHHHHHHhh-cCCcccHHHHHhcCcHHHHHHHHh-cCCHHHHHHHHHHHHHHcCChhhHHHHhhcCcHHHHHH
Q 001833 473 DDNQASRDAQELLENL-SFSDDNVVQMAKANYFKHLLQRLS-AGPESVKMRMATTLAEMELTDHHKASLLEGNVLGPLLH 550 (1008)
Q Consensus 473 ~~~~~~~~a~~aL~~L-s~~~~n~~~i~~~g~v~~Lv~~L~-~~~~~~~~~aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~ 550 (1008)
.|+..+..|--.|.++ |...+.+ ..-+|.|+..+. ++.|.+|.++...|+.+..+-.+-. ...-..|.+
T Consensus 908 sd~~lq~aA~l~L~klMClS~~fc-----~ehlpllIt~mek~p~P~IR~NaVvglgD~~vcfN~~~----de~t~yLyr 978 (1128)
T COG5098 908 SDEELQVAAYLSLYKLMCLSFEFC-----SEHLPLLITSMEKHPIPRIRANAVVGLGDFLVCFNTTA----DEHTHYLYR 978 (1128)
T ss_pred CCHHHHHHHHHHHHHHHHHhHHHH-----HHHHHHHHHHHhhCCCcceeccceeeccccceehhhhh----HHHHHHHHH
Confidence 4777888887778776 4443332 234678888876 7788999999999988755432211 122345667
Q ss_pred HhccCCHHHHHHHHHHHHHhhCCCchhHHHHhcCChHHHHHHhcccCCCCcchHHHHHHHHHHHhcc
Q 001833 551 LVSRGDIQMKKVAVKALRNLSSVPQNGLQMIKEGAVGPLVDLLLHHSSSSSSLREETATAIMHLAVS 617 (1008)
Q Consensus 551 lL~~~~~~~~~~A~~aL~~L~~~~~~~~~i~~~G~v~~Ll~ll~~~~~~~~~~~~~a~~~L~nLa~~ 617 (1008)
-|.+.+..+++.|+..+..|-... .+--.|-.+.+..+|.+.+ ..+.+.|-..+..++..
T Consensus 979 rL~De~~~V~rtclmti~fLilag----q~KVKGqlg~ma~~L~ded---a~Isdmar~fft~~a~K 1038 (1128)
T COG5098 979 RLGDEDADVRRTCLMTIHFLILAG----QLKVKGQLGKMALLLTDED---AEISDMARHFFTQIAKK 1038 (1128)
T ss_pred HhcchhhHHHHHHHHHHHHHHHcc----ceeeccchhhhHhhccCCc---chHHHHHHHHHHHHHhc
Confidence 777888899999999998886321 2223477888888887655 56888888888888763
No 313
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=65.06 E-value=2.1 Score=35.45 Aligned_cols=47 Identities=21% Similarity=0.463 Sum_probs=22.2
Q ss_pred cccccccccccC----Cceec----cCcccccHHHHHHHHhc--CC--------CCCCCcCccCC
Q 001833 265 SFYCPITRDVMV----DPVET----SSGQTFERSAIEKWFSD--GN--------NLCPLTMTVLD 311 (1008)
Q Consensus 265 ~~~cpi~~~~m~----dpv~~----~~g~t~~r~~i~~w~~~--~~--------~~cp~~~~~l~ 311 (1008)
+..|+||.+... .|+.+ .||++|=+.|+.+||.. +. .+||.++++++
T Consensus 2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~ 66 (70)
T PF11793_consen 2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPIS 66 (70)
T ss_dssp --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEE
T ss_pred CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeee
Confidence 467999998754 26665 36899999999999963 21 24999988764
No 314
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=64.40 E-value=4.6 Score=43.94 Aligned_cols=49 Identities=22% Similarity=0.430 Sum_probs=32.7
Q ss_pred ccccccccccCCc---e-eccCcccccHHHHHHHHhc--CCCCCCCcCccCCCCC
Q 001833 266 FYCPITRDVMVDP---V-ETSSGQTFERSAIEKWFSD--GNNLCPLTMTVLDTSI 314 (1008)
Q Consensus 266 ~~cpi~~~~m~dp---v-~~~~g~t~~r~~i~~w~~~--~~~~cp~~~~~l~~~~ 314 (1008)
-.|.||-+.+-.- - |-.|||+|.-.|+.+||.- .+++||.|+-.+....
T Consensus 5 A~C~Ic~d~~p~~~~l~~i~~cGhifh~~cl~qwfe~~Ps~R~cpic~ik~~~r~ 59 (465)
T KOG0827|consen 5 AECHICIDGRPNDHELGPIGTCGHIFHTTCLTQWFEGDPSNRGCPICQIKLQERH 59 (465)
T ss_pred ceeeEeccCCccccccccccchhhHHHHHHHHHHHccCCccCCCCceeeccccee
Confidence 3677774443211 1 2259999999999999973 3468999985554333
No 315
>COG5627 MMS21 DNA repair protein MMS21 [DNA replication, recombination, and repair]
Probab=62.92 E-value=3.8 Score=41.39 Aligned_cols=52 Identities=21% Similarity=0.238 Sum_probs=39.3
Q ss_pred cccccccccccCCceec-cCcccccHHHHHHHHh-cCCCCCCCc--CccCCCCCCc
Q 001833 265 SFYCPITRDVMVDPVET-SSGQTFERSAIEKWFS-DGNNLCPLT--MTVLDTSILR 316 (1008)
Q Consensus 265 ~~~cpi~~~~m~dpv~~-~~g~t~~r~~i~~w~~-~~~~~cp~~--~~~l~~~~l~ 316 (1008)
+.+|||++....-|++- .|.|-|||..|.+.++ .-.+.||+- .+++.-..++
T Consensus 189 ~nrCpitl~p~~~pils~kcnh~~e~D~I~~~lq~~~trvcp~~~Csq~~~~~~~v 244 (275)
T COG5627 189 SNRCPITLNPDFYPILSSKCNHKPEMDLINKKLQVECTRVCPRLICSQKEVVDPYV 244 (275)
T ss_pred cccCCcccCcchhHHHHhhhcccccHHHHHHHhcCCceeecchhhcchheeccchh
Confidence 67999999999999886 5899999999999986 234568864 3444444443
No 316
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=61.54 E-value=36 Score=33.67 Aligned_cols=112 Identities=19% Similarity=0.278 Sum_probs=73.0
Q ss_pred ChHHHHHhhccCChhHHHHHHHHHHHhccCCChhHHHhhhcccchHHHHHHhcCCCCHHHHHHHHHHHhcCCC----Chh
Q 001833 680 AIPVLVQLCEHDNENVRANAVKLFCCLVDDGDEAIIREHVGQKCLETLVTIIQSSHNEEEIASAMGILSKLPE----VPQ 755 (1008)
Q Consensus 680 ~i~~Lv~ll~~~~~~v~~~a~~~L~~Ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~v~~~a~~~L~nL~~----~~~ 755 (1008)
.+..+..++++++++-|-.++.++..++..++.+..... ....+..|+.+|+.++...+...++.++..|-. .++
T Consensus 26 l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~-~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~p~ 104 (165)
T PF08167_consen 26 LVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSH-GSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGKPT 104 (165)
T ss_pred HHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHH-HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCc
Confidence 356677889999999999999998888844333333222 235788899999998777888888888777643 555
Q ss_pred hHHHHHhcC---CHHHHHHHhhCCCCCCCchhhHHHHHHHHHHHhcCC
Q 001833 756 FTQWLLDAG---ALPIVLNFLKNGRQNDPNRFQVVENAVGALRRFTAP 800 (1008)
Q Consensus 756 ~~~~l~~~g---~l~~Lv~lL~~~~~~~~~~~~v~~~a~~aL~~L~~~ 800 (1008)
..+.+.... +++.+++++++ ....+.++.+|..+...
T Consensus 105 l~Rei~tp~l~~~i~~ll~l~~~--------~~~~~~~l~~L~~ll~~ 144 (165)
T PF08167_consen 105 LTREIATPNLPKFIQSLLQLLQD--------SSCPETALDALATLLPH 144 (165)
T ss_pred hHHHHhhccHHHHHHHHHHHHhc--------cccHHHHHHHHHHHHHH
Confidence 555554333 33344444432 24556666666666543
No 317
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=59.85 E-value=2.2e+02 Score=34.22 Aligned_cols=163 Identities=17% Similarity=0.118 Sum_probs=89.6
Q ss_pred HhccChhHHHHHHHHHHHhccCchhhHHhhc---ccchHHHHHHHhcCCChHHHHHHHHHHHhhcCCcccHHHHHhcCcH
Q 001833 428 SLGRRIEERKLAVALLLELSTCNTLRDQIGD---VQGCILLLVTMASSDDNQASRDAQELLENLSFSDDNVVQMAKANYF 504 (1008)
Q Consensus 428 ~L~~~~~~~~~A~~~L~~Ls~~~~~~~~i~~---~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~~~n~~~i~~~g~v 504 (1008)
+++.+.+.+-.|.-.|+-+..++..-..+.. ....+..++..+. .++..+..++++|.|+-.++-++..+... .
T Consensus 553 l~~wp~~~~fPalDilRl~v~h~~~~s~~~~~~~~~~~~~~li~~~~-~~~an~ll~vR~L~N~f~~~~g~~~~~s~--~ 629 (745)
T KOG0301|consen 553 LLQWPVEMMFPALDILRLAVKHHSSNSLFCDREEGQNLVGTLIPILN-ADPANQLLVVRCLANLFSNPAGRELFMSR--L 629 (745)
T ss_pred HhcCCHHHhhhHHHHHHHHHhccchhhhhhhhhhhhHHHHhhhcccc-cchhHHHHHHHHHHHhccCHHHHHHHHHH--H
Confidence 3344555666677777766554432222221 1123444444444 66888889999999998887666655443 2
Q ss_pred HHHHHHH---hcCC-HHHHHHHHHHHHHHcC--ChhhHHHHhhcCcHHHHHHHhccC-----CHHHHHHHHHHHHHhhCC
Q 001833 505 KHLLQRL---SAGP-ESVKMRMATTLAEMEL--TDHHKASLLEGNVLGPLLHLVSRG-----DIQMKKVAVKALRNLSSV 573 (1008)
Q Consensus 505 ~~Lv~~L---~~~~-~~~~~~aa~~L~~Ls~--~~~~k~~i~~~g~i~~Lv~lL~~~-----~~~~~~~A~~aL~~L~~~ 573 (1008)
..++..+ +..+ ..++...+....|++. ...+- +.|..+.+...+... +-+..-.++.||.+|+..
T Consensus 630 ~~i~~~~~~~~s~~~knl~ia~atlaln~sv~l~~~~~----~~~~~~~l~~ai~~~~e~~~d~EA~yR~l~AlgtL~t~ 705 (745)
T KOG0301|consen 630 ESILDPVIEASSLSNKNLQIALATLALNYSVLLIQDNE----QLEGKEVLLSAISTLLEPVDDLEAIYRLLVALGTLMTV 705 (745)
T ss_pred HHHhhhhhhhhcccchhHHHHHHHHHHHHHHHHHhccc----ccchHHHHHHHHHhhcccchhHHHHHHHHHHHHhhccc
Confidence 2222221 2222 2333333333333322 11111 134444444443321 334566778899999988
Q ss_pred CchhHHHHhcCChHHHHHHhcccC
Q 001833 574 PQNGLQMIKEGAVGPLVDLLLHHS 597 (1008)
Q Consensus 574 ~~~~~~i~~~G~v~~Ll~ll~~~~ 597 (1008)
+.+..++.+.--+..++.-+++..
T Consensus 706 ~~~~~~~A~~~~v~sia~~~~~~~ 729 (745)
T KOG0301|consen 706 DASVIQLAKNRSVDSIAKKLKEAV 729 (745)
T ss_pred cHHHHHHHHhcCHHHHHHHHHHhc
Confidence 888888877777888888777644
No 318
>PF11791 Aconitase_B_N: Aconitate B N-terminal domain; InterPro: IPR015933 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. This entry represents the N-terminal HEAT-like domain, which is present in bacterial aconitase (AcnB), but not in AcnA or eukaryotic cAcn/IRP2 or mAcn. This domain is multi-helical, forming two curved layers in a right-handed alpha-alpha superhelix. HEAT-like domains are usually implicated in protein-protein interactions. The HEAT-like domain and the 'swivel' domain that follows it were shown to be sufficient for dimerisation and for AcnB binding to mRNA. An iron-mediated dimerisation mechanism may be responsible for switching AcnB between its catalytic and regulatory roles, as dimerisation requires iron while mRNA binding is inhibited by iron. More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0003994 aconitate hydratase activity, 0006099 tricarboxylic acid cycle; PDB: 1L5J_B.
Probab=58.93 E-value=18 Score=34.64 Aligned_cols=28 Identities=29% Similarity=0.451 Sum_probs=20.7
Q ss_pred cHHHHHHHhccCCHHHHHHHHHHHHHhh
Q 001833 544 VLGPLLHLVSRGDIQMKKVAVKALRNLS 571 (1008)
Q Consensus 544 ~i~~Lv~lL~~~~~~~~~~A~~aL~~L~ 571 (1008)
-|.+||++|.+.++.+...|+.+|.+-.
T Consensus 95 NV~~LI~~L~~~d~~lA~~Aa~aLk~Tl 122 (154)
T PF11791_consen 95 NVQPLIDLLKSDDEELAEEAAEALKNTL 122 (154)
T ss_dssp THHHHHHGG--G-TTTHHHHHHHHHT--
T ss_pred cHHHHHHHHcCCcHHHHHHHHHHHHhhH
Confidence 3899999999888899999999998765
No 319
>KOG4464 consensus Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) [Signal transduction mechanisms]
Probab=58.22 E-value=3.2e+02 Score=30.89 Aligned_cols=154 Identities=13% Similarity=0.091 Sum_probs=90.5
Q ss_pred HHHHHhcccCCCCcchHHHHHHHHHHHhccccccccCCcccccccchhHHHHHHHhhc----------cCChHHHHHHHH
Q 001833 588 PLVDLLLHHSSSSSSLREETATAIMHLAVSTMYQESSQTPVTLLESDKEIFMLFSLIN----------LTGPNVQQRILQ 657 (1008)
Q Consensus 588 ~Ll~ll~~~~~~~~~~~~~a~~~L~nLa~~~~~~~~~~~~~~~l~~~~~i~~L~~ll~----------~~~~~v~~~al~ 657 (1008)
.+++.+..+.. ...+..++.++.-|+.+..+-.. +..+..+..|+.+-. ..+..+...++.
T Consensus 49 ~i~~Vle~~~p--~t~~v~~LetvrILSRdk~~L~~-------~~~~q~~~~ll~~A~ls~~e~sl~~v~d~~vi~EslK 119 (532)
T KOG4464|consen 49 RIFEVLENGEP--LTHRVVCLETVRILSRDKDGLEP-------LTNDQLCQKLLALAELSSNENSLPTVADMHVIMESLK 119 (532)
T ss_pred HHHHHHhcCCC--chhhhhHHHHHHHHhcccccccc-------ccchHHHHHHHHHHHhccccCCCCcccchHHHHHHHH
Confidence 34444443321 23455566666666655443332 233344444444432 123466778999
Q ss_pred HHHHhccCCChhhHHHHhhhcCChHHHHHhhccC-----ChhHHHHHHHHHHHhccCCChhHHHhhhcccchHHHHHHhc
Q 001833 658 TFNALCRSPSAGNIKTTLTQCSAIPVLVQLCEHD-----NENVRANAVKLFCCLVDDGDEAIIREHVGQKCLETLVTIIQ 732 (1008)
Q Consensus 658 aL~~L~~~~~~~~~~~~i~e~~~i~~Lv~ll~~~-----~~~v~~~a~~~L~~Ls~~~~~~~~~~~~~~~~i~~Lv~lL~ 732 (1008)
+|.|+..+ +...+....+......+++++... ...+...-+++|.-++........+.+.+.++++.+.+++.
T Consensus 120 CLcNlvf~--Sq~~q~~~~~~~~~~~ll~~v~~~~er~~~~~~~~~dlrLLflltale~~~Rsql~~~l~Gl~~lt~~le 197 (532)
T KOG4464|consen 120 CLCNLVFH--SQRAQDLFLENPLTGKLLQRVLGEFERNFPKDSSIFDLRLLFLLTALETDHRSQLIAELLGLELLTNWLE 197 (532)
T ss_pred HHHHHHhc--cHHHHHHHHhhhhHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHhhHHHHHHHHHHhcccHHHHHHhh
Confidence 99999886 567788888877777777765432 23455555666666664444555556677789999999987
Q ss_pred CC----C-------C---HHHHHHHHHHHhcCCC
Q 001833 733 SS----H-------N---EEEIASAMGILSKLPE 752 (1008)
Q Consensus 733 ~~----~-------~---~~v~~~a~~~L~nL~~ 752 (1008)
+. + + .+....++.++.|+..
T Consensus 198 d~lgidse~n~~~l~pqe~n~a~EaLK~~FNvt~ 231 (532)
T KOG4464|consen 198 DKLGIDSEINVPPLNPQETNRACEALKVFFNVTC 231 (532)
T ss_pred ccccCCCCcCCCCCCHHHHHHHHHHHHHHhheee
Confidence 54 1 0 1233456666777755
No 320
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=58.09 E-value=72 Score=38.30 Aligned_cols=189 Identities=12% Similarity=0.161 Sum_probs=113.0
Q ss_pred hcccchHHHHHHhcCCCCHHHHHHHHHHHhcCCC-ChhhHHHHHhcCCHHHHHHHhhCCCCCCCchhhHHHHHHHHHHHh
Q 001833 719 VGQKCLETLVTIIQSSHNEEEIASAMGILSKLPE-VPQFTQWLLDAGALPIVLNFLKNGRQNDPNRFQVVENAVGALRRF 797 (1008)
Q Consensus 719 ~~~~~i~~Lv~lL~~~~~~~v~~~a~~~L~nL~~-~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~v~~~a~~aL~~L 797 (1008)
...+.++.|++++... +..++.. .|.++-. -+.....+++..++|.+...+.+ .++.+|+.++.++..+
T Consensus 327 yq~~i~p~l~kLF~~~-Dr~iR~~---LL~~i~~~i~~Lt~~~~~d~I~phv~~G~~D------Tn~~Lre~Tlksm~~L 396 (690)
T KOG1243|consen 327 YQVRIIPVLLKLFKSP-DRQIRLL---LLQYIEKYIDHLTKQILNDQIFPHVALGFLD------TNATLREQTLKSMAVL 396 (690)
T ss_pred cccchhhhHHHHhcCc-chHHHHH---HHHhHHHHhhhcCHHhhcchhHHHHHhhccc------CCHHHHHHHHHHHHHH
Confidence 4557899999999884 3345433 3444433 34445667788889999999998 6889999999998888
Q ss_pred cCCCCHHHHHHHHHcCChHHHHHHhhcCChHHHHHHHHHHhhhhhcCCCCCCCCCCCCcccccCCCCCCcccccCcccCc
Q 001833 798 TAPTNLEWQKRAAEAGVIPKLVQLLEYGTTLTKEHAATSLARFSKNSLGLSRPIPKRKGFWCFSPPPEIGCQVHGGLCGI 877 (1008)
Q Consensus 798 ~~~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~v~~~Aa~aL~nLs~~~~~l~~~~~~~~g~~~~~~~~~~~c~vh~~~c~~ 877 (1008)
+...++. ......+..+-.+-.+.+..+|.....+|+.++...... .
T Consensus 397 a~kL~~~----~Ln~Ellr~~ar~q~d~~~~irtntticlgki~~~l~~~-----------------------------~ 443 (690)
T KOG1243|consen 397 APKLSKR----NLNGELLRYLARLQPDEHGGIRTNTTICLGKIAPHLAAS-----------------------------V 443 (690)
T ss_pred Hhhhchh----hhcHHHHHHHHhhCccccCcccccceeeecccccccchh-----------------------------h
Confidence 7532222 122223344444434455577777777777776332110 0
Q ss_pred ccchhHhhccchHHHHHhhcCCChhhhHHHHHHHHhhhcccccchhhHHHHhcCchHHHHHHhcCCChHHHHHHHHHHHH
Q 001833 878 ESSFCLLEANAVRPLVRVLEDPDHGACEASLDALVTLIEGERLQNGSKVLEDANAIDRMVRFLSSPSPKLQEKALDSVER 957 (1008)
Q Consensus 878 ~~~~~l~~~g~i~~Lv~lL~~~d~~v~~~al~aL~~L~~~~~~~~~~~~i~~~~~i~~l~~ll~~~~~~l~~~a~~~L~~ 957 (1008)
...-.+.++.+-+.++-...|.++..+|...- + ..-..=.....++.++-+.-+++..++..|...+..
T Consensus 444 ------R~~vL~~aftralkdpf~paR~a~v~~l~at~--~---~~~~~~va~kIlp~l~pl~vd~e~~vr~~a~~~i~~ 512 (690)
T KOG1243|consen 444 ------RKRVLASAFTRALKDPFVPARKAGVLALAATQ--E---YFDQSEVANKILPSLVPLTVDPEKTVRDTAEKAIRQ 512 (690)
T ss_pred ------hccccchhhhhhhcCCCCCchhhhhHHHhhcc--c---ccchhhhhhhccccccccccCcccchhhHHHHHHHH
Confidence 11113444555566665667777777666554 1 111111233446666666677788888888887776
Q ss_pred HhcC
Q 001833 958 IFRL 961 (1008)
Q Consensus 958 l~~~ 961 (1008)
++..
T Consensus 513 fl~k 516 (690)
T KOG1243|consen 513 FLEK 516 (690)
T ss_pred HHhh
Confidence 6543
No 321
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=57.54 E-value=2e+02 Score=34.78 Aligned_cols=189 Identities=15% Similarity=0.198 Sum_probs=114.4
Q ss_pred HhcCCHHHHHHHhhCCCCCCCchhhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHHHhhcCChHHHHHHHHHHhhh
Q 001833 761 LDAGALPIVLNFLKNGRQNDPNRFQVVENAVGALRRFTAPTNLEWQKRAAEAGVIPKLVQLLEYGTTLTKEHAATSLARF 840 (1008)
Q Consensus 761 ~~~g~l~~Lv~lL~~~~~~~~~~~~v~~~a~~aL~~L~~~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~v~~~Aa~aL~nL 840 (1008)
++.+++|.|+++... ++..+|-..+.-+-++..+ ..+.+.+..++|.+...+.+.++.+|..+..++..+
T Consensus 327 yq~~i~p~l~kLF~~------~Dr~iR~~LL~~i~~~i~~----Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~L 396 (690)
T KOG1243|consen 327 YQVRIIPVLLKLFKS------PDRQIRLLLLQYIEKYIDH----LTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVL 396 (690)
T ss_pred cccchhhhHHHHhcC------cchHHHHHHHHhHHHHhhh----cCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHH
Confidence 677899999999999 6777777666665555543 233456678899999999999999999999999888
Q ss_pred hhcCCCCCCCCCCCCcccccCCCCCCcccccCcccCcccchhHhhccchHHHHHhhcCCChhhhHHHHHHHHhhhccccc
Q 001833 841 SKNSLGLSRPIPKRKGFWCFSPPPEIGCQVHGGLCGIESSFCLLEANAVRPLVRVLEDPDHGACEASLDALVTLIEGERL 920 (1008)
Q Consensus 841 s~~~~~l~~~~~~~~g~~~~~~~~~~~c~vh~~~c~~~~~~~l~~~g~i~~Lv~lL~~~d~~v~~~al~aL~~L~~~~~~ 920 (1008)
+..- .. + -+....++.|-++-.+.+..+|-..-.+|..+.
T Consensus 397 a~kL---~~----------------------------~----~Ln~Ellr~~ar~q~d~~~~irtntticlgki~----- 436 (690)
T KOG1243|consen 397 APKL---SK----------------------------R----NLNGELLRYLARLQPDEHGGIRTNTTICLGKIA----- 436 (690)
T ss_pred Hhhh---ch----------------------------h----hhcHHHHHHHHhhCccccCcccccceeeecccc-----
Confidence 7211 00 0 011123444444444566667776666666665
Q ss_pred chhhHHHHhcCc-hHHHHHHhcCCChHHHHHHHHHHH---HHhcChHHHHHhccccCchhhhhcccCCchhhHHHHHHHH
Q 001833 921 QNGSKVLEDANA-IDRMVRFLSSPSPKLQEKALDSVE---RIFRLPEFKQKYGKSAQMPLVDLTQRGNSSMKSLSARVLA 996 (1008)
Q Consensus 921 ~~~~~~i~~~~~-i~~l~~ll~~~~~~l~~~a~~~L~---~l~~~~~~~~~~~~~~~~~Lv~l~~~~~~~~~~~Aa~~L~ 996 (1008)
+........+. +.+.-+-+.++-...|.++++.+. ++|...+++.++ .+.++-++-+.+..+|..|-+++.
T Consensus 437 -~~l~~~~R~~vL~~aftralkdpf~paR~a~v~~l~at~~~~~~~~va~kI----lp~l~pl~vd~e~~vr~~a~~~i~ 511 (690)
T KOG1243|consen 437 -PHLAASVRKRVLASAFTRALKDPFVPARKAGVLALAATQEYFDQSEVANKI----LPSLVPLTVDPEKTVRDTAEKAIR 511 (690)
T ss_pred -cccchhhhccccchhhhhhhcCCCCCchhhhhHHHhhcccccchhhhhhhc----cccccccccCcccchhhHHHHHHH
Confidence 11111111211 122333345555566666666554 445444444322 244555666777888888877766
Q ss_pred -HHhccccC
Q 001833 997 -HLNVLQDQ 1004 (1008)
Q Consensus 997 -~L~~~~~~ 1004 (1008)
-+.++.+.
T Consensus 512 ~fl~kl~~~ 520 (690)
T KOG1243|consen 512 QFLEKLEKV 520 (690)
T ss_pred HHHhhhhhh
Confidence 34444444
No 322
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=57.26 E-value=5.2 Score=48.42 Aligned_cols=45 Identities=27% Similarity=0.621 Sum_probs=33.7
Q ss_pred cccccccccC--C---ceec--cCcccccHHHHHHHHhc-CCCCCCCcCccCC
Q 001833 267 YCPITRDVMV--D---PVET--SSGQTFERSAIEKWFSD-GNNLCPLTMTVLD 311 (1008)
Q Consensus 267 ~cpi~~~~m~--d---pv~~--~~g~t~~r~~i~~w~~~-~~~~cp~~~~~l~ 311 (1008)
-|+||..+.. | |--. .|.+.|--+|+.+||.. |+.+||.||-..+
T Consensus 1471 ECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~~s~CPlCRseit 1523 (1525)
T COG5219 1471 ECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEIT 1523 (1525)
T ss_pred hhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcCCCCCCccccccc
Confidence 5999998876 3 3332 25678888999999984 6789999985543
No 323
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=56.39 E-value=2.5e+02 Score=29.83 Aligned_cols=66 Identities=20% Similarity=0.329 Sum_probs=46.1
Q ss_pred ccchhHHHHHHHhhccCChH--------HHHHHHHHHHHhccCCChhhHHHHhhhcCChHHHHHhhccC--ChhHHHHHH
Q 001833 631 LESDKEIFMLFSLINLTGPN--------VQQRILQTFNALCRSPSAGNIKTTLTQCSAIPVLVQLCEHD--NENVRANAV 700 (1008)
Q Consensus 631 l~~~~~i~~L~~ll~~~~~~--------v~~~al~aL~~L~~~~~~~~~~~~i~e~~~i~~Lv~ll~~~--~~~v~~~a~ 700 (1008)
+....+.++++++++.++.. +.+..-++|+.++. |-++.|.+++.++ +.-+|.+|+
T Consensus 69 ~re~~A~~~li~l~~~~~~~~~~l~GD~~tE~l~~ilasv~~--------------G~~~~L~~li~~~~~~~yvR~aa~ 134 (249)
T PF06685_consen 69 FREERALPPLIRLFSQDDDFLEDLFGDFITEDLPRILASVGD--------------GDIEPLKELIEDPDADEYVRMAAI 134 (249)
T ss_pred HhhhhhHHHHHHHHcCCcchHHHHHcchhHhHHHHHHHHHhC--------------CCHHHHHHHHhCCcHHHHHHHHHH
Confidence 34567899999999754432 33344445555543 4588888998887 477899999
Q ss_pred HHHHHhccCC
Q 001833 701 KLFCCLVDDG 710 (1008)
Q Consensus 701 ~~L~~Ls~~~ 710 (1008)
.+|..++..+
T Consensus 135 ~aL~~l~~~~ 144 (249)
T PF06685_consen 135 SALAFLVHEG 144 (249)
T ss_pred HHHHHHHHcC
Confidence 9999998443
No 324
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=56.36 E-value=69 Score=31.64 Aligned_cols=107 Identities=18% Similarity=0.117 Sum_probs=69.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHcCChhhHHHHhhcC--cHHHHHHHhccC-CHHHHHHHHHHHHHhhC----CCch
Q 001833 504 FKHLLQRLSAGPESVKMRMATTLAEMELTDHHKASLLEGN--VLGPLLHLVSRG-DIQMKKVAVKALRNLSS----VPQN 576 (1008)
Q Consensus 504 v~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~~~~k~~i~~~g--~i~~Lv~lL~~~-~~~~~~~A~~aL~~L~~----~~~~ 576 (1008)
+..+..+|++.++..|+.++..+..+....+ ...+.+.| .+..++.+|+.. .+.+++.|+.+|..|.. .++.
T Consensus 27 ~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~-~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~p~l 105 (165)
T PF08167_consen 27 VTRINSLLQSKSAYSRWAGLCLLKVTVEQCS-WEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGKPTL 105 (165)
T ss_pred HHHHHHHhCCCChhhHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCch
Confidence 4556777888888899988887777654332 23343433 578888999876 45678888888888873 3443
Q ss_pred hHHHHhc---CChHHHHHHhcccCCCCcchHHHHHHHHHHHhc
Q 001833 577 GLQMIKE---GAVGPLVDLLLHHSSSSSSLREETATAIMHLAV 616 (1008)
Q Consensus 577 ~~~i~~~---G~v~~Ll~ll~~~~~~~~~~~~~a~~~L~nLa~ 616 (1008)
..++.-. +.++.++.++.+ ....+.++.+|..+-.
T Consensus 106 ~Rei~tp~l~~~i~~ll~l~~~-----~~~~~~~l~~L~~ll~ 143 (165)
T PF08167_consen 106 TREIATPNLPKFIQSLLQLLQD-----SSCPETALDALATLLP 143 (165)
T ss_pred HHHHhhccHHHHHHHHHHHHhc-----cccHHHHHHHHHHHHH
Confidence 3343322 235555565553 2457778888877765
No 325
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=56.17 E-value=8.5 Score=40.56 Aligned_cols=31 Identities=29% Similarity=0.567 Sum_probs=28.4
Q ss_pred cCcccccHHHHHHHHhcCCCCCCCcCccCCC
Q 001833 282 SSGQTFERSAIEKWFSDGNNLCPLTMTVLDT 312 (1008)
Q Consensus 282 ~~g~t~~r~~i~~w~~~~~~~cp~~~~~l~~ 312 (1008)
+|||+.|-+|..+-|..|...||.|+..|..
T Consensus 22 ~C~H~lCEsCvd~iF~~g~~~CpeC~~iLRk 52 (300)
T KOG3800|consen 22 ECGHRLCESCVDRIFSLGPAQCPECMVILRK 52 (300)
T ss_pred cccchHHHHHHHHHHhcCCCCCCcccchhhh
Confidence 7999999999999999999999999887753
No 326
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=55.80 E-value=2.7e+02 Score=33.45 Aligned_cols=167 Identities=20% Similarity=0.129 Sum_probs=96.6
Q ss_pred HHcCCCHHHHHHHHHHHHHhccCChhhHHHhhc--cCCcHHHHHHHhccChhHHHHHHHHHHHhccCchhhHHhhcccch
Q 001833 385 LLGSKNRDVRNRALIILHILVKDSNDTKERLAN--GDDAVESIVRSLGRRIEERKLAVALLLELSTCNTLRDQIGDVQGC 462 (1008)
Q Consensus 385 lL~s~~~~~~~~Al~~L~~Ls~~~~~~k~~i~~--~~g~i~~Lv~~L~~~~~~~~~A~~~L~~Ls~~~~~~~~i~~~~g~ 462 (1008)
.+-.-..+.+.-|+-+|+.+..++..+-..+-. ....+..++..+..++..+..++.+|.|+-.++..+.-+......
T Consensus 552 ~l~~wp~~~~fPalDilRl~v~h~~~~s~~~~~~~~~~~~~~li~~~~~~~an~ll~vR~L~N~f~~~~g~~~~~s~~~~ 631 (745)
T KOG0301|consen 552 ILLQWPVEMMFPALDILRLAVKHHSSNSLFCDREEGQNLVGTLIPILNADPANQLLVVRCLANLFSNPAGRELFMSRLES 631 (745)
T ss_pred HHhcCCHHHhhhHHHHHHHHHhccchhhhhhhhhhhhHHHHhhhcccccchhHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 344456778888888888887766433222211 023444555555544556777888888888888777777653333
Q ss_pred HHHHHHHhcCC-ChHHHHHHHHHHHhhcC--CcccHHHHHhcCcHHHHHHHHhcC-----CHHHHHHHHHHHHHHcCChh
Q 001833 463 ILLLVTMASSD-DNQASRDAQELLENLSF--SDDNVVQMAKANYFKHLLQRLSAG-----PESVKMRMATTLAEMELTDH 534 (1008)
Q Consensus 463 i~~Lv~lL~~~-~~~~~~~a~~aL~~Ls~--~~~n~~~i~~~g~v~~Lv~~L~~~-----~~~~~~~aa~~L~~Ls~~~~ 534 (1008)
+...+.-.++. +..++....+...|++. ..++- +.|..+.+...+... +-+.....+.+|++|...+.
T Consensus 632 i~~~~~~~~s~~~knl~ia~atlaln~sv~l~~~~~----~~~~~~~l~~ai~~~~e~~~d~EA~yR~l~AlgtL~t~~~ 707 (745)
T KOG0301|consen 632 ILDPVIEASSLSNKNLQIALATLALNYSVLLIQDNE----QLEGKEVLLSAISTLLEPVDDLEAIYRLLVALGTLMTVDA 707 (745)
T ss_pred HhhhhhhhhcccchhHHHHHHHHHHHHHHHHHhccc----ccchHHHHHHHHHhhcccchhHHHHHHHHHHHHhhccccH
Confidence 33223323333 34444444445555542 22221 145555555554332 22455667888899988887
Q ss_pred hHHHHhhcCcHHHHHHHhccC
Q 001833 535 HKASLLEGNVLGPLLHLVSRG 555 (1008)
Q Consensus 535 ~k~~i~~~g~i~~Lv~lL~~~ 555 (1008)
....+.+.-.+..+++-+++.
T Consensus 708 ~~~~~A~~~~v~sia~~~~~~ 728 (745)
T KOG0301|consen 708 SVIQLAKNRSVDSIAKKLKEA 728 (745)
T ss_pred HHHHHHHhcCHHHHHHHHHHh
Confidence 777777776777777777653
No 327
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=55.12 E-value=3.5 Score=50.15 Aligned_cols=49 Identities=29% Similarity=0.442 Sum_probs=39.4
Q ss_pred ccccccccccCCceeccCcccccHHHHHHHHhc-CCCCCCCcCccCCCCCC
Q 001833 266 FYCPITRDVMVDPVETSSGQTFERSAIEKWFSD-GNNLCPLTMTVLDTSIL 315 (1008)
Q Consensus 266 ~~cpi~~~~m~dpv~~~~g~t~~r~~i~~w~~~-~~~~cp~~~~~l~~~~l 315 (1008)
+.|++|.+ -.+|+++.|||-+|+.|+.+-++. ....||.|+..+.+..+
T Consensus 455 ~~c~ic~~-~~~~~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~~~~l 504 (674)
T KOG1001|consen 455 HWCHICCD-LDSFFITRCGHDFCVECLKKSIQQSENAPCPLCRNVLKEKKL 504 (674)
T ss_pred cccccccc-cccceeecccchHHHHHHHhccccccCCCCcHHHHHHHHHHH
Confidence 89999999 888999999999999999997764 33369988766654333
No 328
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=55.01 E-value=5.7 Score=32.63 Aligned_cols=47 Identities=21% Similarity=0.376 Sum_probs=31.8
Q ss_pred cccccccccccCC-ceec-cCcccccHHHHHHHHhc--CCCCCCCcCccCC
Q 001833 265 SFYCPITRDVMVD-PVET-SSGQTFERSAIEKWFSD--GNNLCPLTMTVLD 311 (1008)
Q Consensus 265 ~~~cpi~~~~m~d-pv~~-~~g~t~~r~~i~~w~~~--~~~~cp~~~~~l~ 311 (1008)
+=.||-|.-.=-| |.+. -|-|.|-+.||.+|++. +...||+++|...
T Consensus 31 dg~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~~ 81 (84)
T KOG1493|consen 31 DGCCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTWQ 81 (84)
T ss_pred CCcCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCccccccCCcchheeE
Confidence 3345544433333 5555 57899999999999973 4567999998653
No 329
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=54.67 E-value=1.1e+02 Score=29.92 Aligned_cols=144 Identities=16% Similarity=0.138 Sum_probs=77.0
Q ss_pred cHHHHHHHHhcC-CHHHHHHHHHHHHHHcCChhhHHHHhhcCcHHHHHHHhccCCHHHHHHHHHHHHHhhCCCchhHHHH
Q 001833 503 YFKHLLQRLSAG-PESVKMRMATTLAEMELTDHHKASLLEGNVLGPLLHLVSRGDIQMKKVAVKALRNLSSVPQNGLQMI 581 (1008)
Q Consensus 503 ~v~~Lv~~L~~~-~~~~~~~aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~~~~~~~i~ 581 (1008)
.++.|+.+|+.+ +..+|.++..+|+.|..-|..+......+.= .-. -.+.+..... ..+.+... ....+...
T Consensus 11 LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k~~~~~~~-~~~--~~~~~~~~~~---~~l~~~~~-~~~~ee~y 83 (160)
T PF11865_consen 11 LLDILLNILKTEQSQSIRREALRVLGILGALDPYKHKSIQKSLD-SKS--SENSNDESTD---ISLPMMGI-SPSSEEYY 83 (160)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHhcccccCC-ccc--cccccccchh---hHHhhccC-CCchHHHH
Confidence 355667777766 5889999999999997777666543221110 000 0000111111 11111111 11233444
Q ss_pred hcCChHHHHHHhcccCCCCcchHHHHHHHHHHHhccccccccCCcccccccchhHHHHHHHhhccCChHHHHHHHHHHHH
Q 001833 582 KEGAVGPLVDLLLHHSSSSSSLREETATAIMHLAVSTMYQESSQTPVTLLESDKEIFMLFSLINLTGPNVQQRILQTFNA 661 (1008)
Q Consensus 582 ~~G~v~~Ll~ll~~~~~~~~~~~~~a~~~L~nLa~~~~~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~aL~~ 661 (1008)
-..++..|+..+++.+.. .-...+..++.++.... +.. .+..+ ...++.++..+...++..++....-|..
T Consensus 84 ~~vvi~~L~~iL~D~sLs--~~h~~vv~ai~~If~~l-~~~----cv~~L--~~viP~~l~~i~~~~~~~~e~~~~qL~~ 154 (160)
T PF11865_consen 84 PTVVINALMRILRDPSLS--SHHTAVVQAIMYIFKSL-GLK----CVPYL--PQVIPIFLRVIRTCPDSLREFYFQQLAD 154 (160)
T ss_pred HHHHHHHHHHHHHhhhhH--HHHHHHHHHHHHHHHhc-CcC----chhHH--HHHhHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 455778888888876532 34456666666666321 111 11222 4567788888886666777766665555
Q ss_pred h
Q 001833 662 L 662 (1008)
Q Consensus 662 L 662 (1008)
|
T Consensus 155 l 155 (160)
T PF11865_consen 155 L 155 (160)
T ss_pred H
Confidence 4
No 330
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=54.19 E-value=3.1e+02 Score=29.46 Aligned_cols=129 Identities=19% Similarity=0.186 Sum_probs=73.6
Q ss_pred HHHHHHHHHHHHHcCChhhHHHHhh--cCcHHHHHHHhccC-CHHHHHHHHHHHHHhhCCCchhHHHHhcCChHHHHHHh
Q 001833 517 SVKMRMATTLAEMELTDHHKASLLE--GNVLGPLLHLVSRG-DIQMKKVAVKALRNLSSVPQNGLQMIKEGAVGPLVDLL 593 (1008)
Q Consensus 517 ~~~~~aa~~L~~Ls~~~~~k~~i~~--~g~i~~Lv~lL~~~-~~~~~~~A~~aL~~L~~~~~~~~~i~~~G~v~~Ll~ll 593 (1008)
..|..+..+|..+..+ .+..+.. .+.+..+++.+... ||+.--.+...+..+...-+. ......+.+.+
T Consensus 97 ~~R~~~~~ll~~l~~~--~~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~~------~~~~e~lFd~~ 168 (262)
T PF14500_consen 97 STRYAVYQLLDSLLEN--HREALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFDI------SEFAEDLFDVF 168 (262)
T ss_pred HHHHHHHHHHHHHHHH--hHHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhccc------chhHHHHHHHh
Confidence 4455555666555322 2222222 35778888888765 898888888888877642111 22233333333
Q ss_pred cc-------cCCCCc--chHHHHHHHHHHHhccccccccCCcccccccchhHHHHHHHhhccCChHHHHHHHHHHHHhcc
Q 001833 594 LH-------HSSSSS--SLREETATAIMHLAVSTMYQESSQTPVTLLESDKEIFMLFSLINLTGPNVQQRILQTFNALCR 664 (1008)
Q Consensus 594 ~~-------~~~~~~--~~~~~a~~~L~nLa~~~~~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~aL~~L~~ 664 (1008)
.. ++.+++ -.++.-...|.+.-.+.. .-.+.+++.++.-|.++.+.++..++.+|..++.
T Consensus 169 ~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~-----------~fa~~~~p~LleKL~s~~~~~K~D~L~tL~~c~~ 237 (262)
T PF14500_consen 169 SCYFPITFRPPPNDPYGITREDLKRALRNCLSSTP-----------LFAPFAFPLLLEKLDSTSPSVKLDSLQTLKACIE 237 (262)
T ss_pred hheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcH-----------hhHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHH
Confidence 21 111111 223333344443332211 1235789999999999999999999999988765
No 331
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=54.01 E-value=34 Score=32.90 Aligned_cols=71 Identities=11% Similarity=0.164 Sum_probs=54.9
Q ss_pred chhhhhhhhccCcchHHHHHHHHHHHHHHhhchh-hhhhHhhcCchHHHHHHHcC-CCHHHHHHHHHHHHHhc
Q 001833 335 ITIASMKPKLVSTEVEEVLHCLEQLQDLCQQRDQ-HREWVILENYIPKLIYLLGS-KNRDVRNRALIILHILV 405 (1008)
Q Consensus 335 ~~~~~~~~~l~~~~~~~~~~al~~L~~l~~~~~~-~r~~i~~~g~i~~L~~lL~s-~~~~~~~~Al~~L~~Ls 405 (1008)
..+..++.++.+.++..+..||.-|..+.+.... -...+++.+++..|+.++.. .+..++...+..+...+
T Consensus 37 ~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~ 109 (144)
T cd03568 37 DCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWA 109 (144)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHH
Confidence 3466788889999999999999888777765543 24456777889999999877 67788888888887665
No 332
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=53.65 E-value=36 Score=32.71 Aligned_cols=71 Identities=20% Similarity=0.312 Sum_probs=54.5
Q ss_pred chhhhhhhhccCcchHHHHHHHHHHHHHHhhc-hhhhhhHhhcCchHHHHHHHcC-CCHHHHHHHHHHHHHhc
Q 001833 335 ITIASMKPKLVSTEVEEVLHCLEQLQDLCQQR-DQHREWVILENYIPKLIYLLGS-KNRDVRNRALIILHILV 405 (1008)
Q Consensus 335 ~~~~~~~~~l~~~~~~~~~~al~~L~~l~~~~-~~~r~~i~~~g~i~~L~~lL~s-~~~~~~~~Al~~L~~Ls 405 (1008)
..+..++.++.++++..+..|+.-|..+.+.- ..-...+++.+++..|+.++.. .++.++..++..+..-+
T Consensus 41 ~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~ 113 (142)
T cd03569 41 YAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWA 113 (142)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHH
Confidence 45677888999999999999998877777663 3345567778899999998874 56678888888876654
No 333
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=53.63 E-value=38 Score=32.52 Aligned_cols=72 Identities=19% Similarity=0.247 Sum_probs=57.6
Q ss_pred ChHHHHHhhccCChhHHHHHHHHHHHhccCCChhHHHhhhcccchHHHHHHhcCCCCHHHHHHHHHHHhcCC
Q 001833 680 AIPVLVQLCEHDNENVRANAVKLFCCLVDDGDEAIIREHVGQKCLETLVTIIQSSHNEEEIASAMGILSKLP 751 (1008)
Q Consensus 680 ~i~~Lv~ll~~~~~~v~~~a~~~L~~Ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~v~~~a~~~L~nL~ 751 (1008)
++..|..-+.++++.++..|+.+|-.+..+.......++...+.+..|+.++....+..++..++..+..-+
T Consensus 42 a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~ 113 (142)
T cd03569 42 AMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWA 113 (142)
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHH
Confidence 466677778889999999999999999866666666777778899999999987667788888777765544
No 334
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=52.94 E-value=3.8 Score=48.49 Aligned_cols=48 Identities=17% Similarity=0.340 Sum_probs=37.9
Q ss_pred ccccccccccccCCceec---cCcccccHHHHHHHHhcCCCCCCCcCccCCC
Q 001833 264 QSFYCPITRDVMVDPVET---SSGQTFERSAIEKWFSDGNNLCPLTMTVLDT 312 (1008)
Q Consensus 264 ~~~~cpi~~~~m~dpv~~---~~g~t~~r~~i~~w~~~~~~~cp~~~~~l~~ 312 (1008)
.+-.||+|..-+.|-.+. .|||-||..||..|-. ...|||.++..+..
T Consensus 122 ~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR-~aqTCPiDR~EF~~ 172 (1134)
T KOG0825|consen 122 VENQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSR-CAQTCPVDRGEFGE 172 (1134)
T ss_pred hhhhhhHHHHHHHHHhhccccccccccHHHHhhhhhh-hcccCchhhhhhhe
Confidence 344689999988887765 5999999999999974 46689999776543
No 335
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=52.01 E-value=43 Score=32.22 Aligned_cols=72 Identities=11% Similarity=0.200 Sum_probs=58.8
Q ss_pred ChHHHHHhhccCChhHHHHHHHHHHHhccCCChhHHHhhhcccchHHHHHHhcCCCCHHHHHHHHHHHhcCC
Q 001833 680 AIPVLVQLCEHDNENVRANAVKLFCCLVDDGDEAIIREHVGQKCLETLVTIIQSSHNEEEIASAMGILSKLP 751 (1008)
Q Consensus 680 ~i~~Lv~ll~~~~~~v~~~a~~~L~~Ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~v~~~a~~~L~nL~ 751 (1008)
++..|..-+.++++.++..|+.+|-.+..+.......++.....+..|+.++....+.+++..++..+...+
T Consensus 38 a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~ 109 (144)
T cd03568 38 CLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWA 109 (144)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHH
Confidence 466677777889999999999999999877666777777788899999999988666788888887776654
No 336
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=51.67 E-value=1.1e+02 Score=36.96 Aligned_cols=132 Identities=20% Similarity=0.199 Sum_probs=90.1
Q ss_pred chHHHHHHHhcCCChHHHHHHHHHHHhhcCCcccHHHHHhcCcHHHHHHH-HhcCCHHHHHHHHHHHHHHcCChhhHHHH
Q 001833 461 GCILLLVTMASSDDNQASRDAQELLENLSFSDDNVVQMAKANYFKHLLQR-LSAGPESVKMRMATTLAEMELTDHHKASL 539 (1008)
Q Consensus 461 g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~~~n~~~i~~~g~v~~Lv~~-L~~~~~~~~~~aa~~L~~Ls~~~~~k~~i 539 (1008)
.++|.|..-+++.+..++..++..+-..+..-+ ...++.-++|.|-.+ +++.+..++.+++.+++.+...- .+..+
T Consensus 389 ~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD--~~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q~l-D~~~v 465 (700)
T KOG2137|consen 389 KILPLLYRSLEDSDVQIQELALQILPTVAESID--VPFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQRL-DKAAV 465 (700)
T ss_pred HHHHHHHHHhcCcchhhHHHHHHhhhHHHHhcc--HHHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHHHHH-HHHHh
Confidence 456778888888899999999998888764333 445566667777666 45557788999999999887211 11111
Q ss_pred hhcCcHHHHHHHhccCCHHHHHHHHHHHHHhhCCCchhHHHHhcCChHHHHHHhcccC
Q 001833 540 LEGNVLGPLLHLVSRGDIQMKKVAVKALRNLSSVPQNGLQMIKEGAVGPLVDLLLHHS 597 (1008)
Q Consensus 540 ~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~~~~~~~i~~~G~v~~Ll~ll~~~~ 597 (1008)
...+.++.+-.+..+|.+.-..+.+..++.....++..++...++|.++.+...+.
T Consensus 466 --~d~~lpi~~~~~~~dp~iv~~~~~i~~~l~~~~~~g~ev~~~~VlPlli~ls~~~~ 521 (700)
T KOG2137|consen 466 --LDELLPILKCIKTRDPAIVMGFLRIYEALALIIYSGVEVMAENVLPLLIPLSVAPS 521 (700)
T ss_pred --HHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhcccceeeehhhhhhhhhhhhhccc
Confidence 23456666677777888888888888888754444344455567777777776544
No 337
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=51.34 E-value=4e+02 Score=31.64 Aligned_cols=93 Identities=22% Similarity=0.217 Sum_probs=61.1
Q ss_pred cCcHHHHHHHHhcCCHHHHHHHHHHHHHHcCChhhHHHHhhcCcHHHHHHHhccCCHHHHHHHHHHHHHhhCCCchhHHH
Q 001833 501 ANYFKHLLQRLSAGPESVKMRMATTLAEMELTDHHKASLLEGNVLGPLLHLVSRGDIQMKKVAVKALRNLSSVPQNGLQM 580 (1008)
Q Consensus 501 ~g~v~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~~~~~~~i 580 (1008)
+|.+..++.-+.+.+..+|..++.+|+.++.+-.--......|.+..|.+-+-+..+.++..|+.+|..+-....|..-.
T Consensus 90 ~~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~neen~ 169 (885)
T COG5218 90 AGTFYHLLRGTESKDKKVRKRSLQILALLSDVVREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMELNEENR 169 (885)
T ss_pred HHHHHHHHhcccCcchhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCChHHH
Confidence 45555566666677788999999999988654322223344677788887777888999999999998886433222111
Q ss_pred HhcCChHHHHHHhcccC
Q 001833 581 IKEGAVGPLVDLLLHHS 597 (1008)
Q Consensus 581 ~~~G~v~~Ll~ll~~~~ 597 (1008)
++..|+.+++..+
T Consensus 170 ----~~n~l~~~vqnDP 182 (885)
T COG5218 170 ----IVNLLKDIVQNDP 182 (885)
T ss_pred ----HHHHHHHHHhcCc
Confidence 2235666666443
No 338
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=50.99 E-value=1e+02 Score=36.89 Aligned_cols=183 Identities=16% Similarity=0.147 Sum_probs=108.5
Q ss_pred HHHHhhccCChHHHHHHHHHHHHhccC--CCh-hhHHHHhhhcCChHHHHHhhccCChhHHHHHHHHHHHhccCCChhHH
Q 001833 639 MLFSLINLTGPNVQQRILQTFNALCRS--PSA-GNIKTTLTQCSAIPVLVQLCEHDNENVRANAVKLFCCLVDDGDEAII 715 (1008)
Q Consensus 639 ~L~~ll~~~~~~v~~~al~aL~~L~~~--~~~-~~~~~~i~e~~~i~~Lv~ll~~~~~~v~~~a~~~L~~Ls~~~~~~~~ 715 (1008)
.+.+-|+..+..+|.+|+..+.++--- |+. .+-.+.+.+.. ...|..+|+++-+.+|..|..-+..... . .
T Consensus 178 ~l~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~kQ-f~~l~~LL~d~~p~VRS~a~~gv~k~~s----~-f 251 (1005)
T KOG1949|consen 178 ILWRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQKQ-FEELYSLLEDPYPMVRSTAILGVCKITS----K-F 251 (1005)
T ss_pred HHHHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHHHH-HHHHHHHhcCCCchHHHHHHHHHHHHHH----H-H
Confidence 355566778889999999999998643 222 23344444443 6778899999999999988877666541 0 1
Q ss_pred Hhhhcc----cchHHHHHHhcCCCCHHHHHHHHHHHhcCCCChhhHHHHHhcCCHHHHHHHhhCCCCCCCchhhHHHHHH
Q 001833 716 REHVGQ----KCLETLVTIIQSSHNEEEIASAMGILSKLPEVPQFTQWLLDAGALPIVLNFLKNGRQNDPNRFQVVENAV 791 (1008)
Q Consensus 716 ~~~~~~----~~i~~Lv~lL~~~~~~~v~~~a~~~L~nL~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~v~~~a~ 791 (1008)
-+++-. ..+..+..-+...+..+++.+....|..+..+|.....+ + -++|.+-..|.+ ....+|.++.
T Consensus 252 We~iP~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np~sh~~l-e-~~Lpal~~~l~D------~se~VRvA~v 323 (1005)
T KOG1949|consen 252 WEMIPPTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDNPLSHPLL-E-QLLPALRYSLHD------NSEKVRVAFV 323 (1005)
T ss_pred HHHcCHHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHcCccchhHH-H-HHHHhcchhhhc------cchhHHHHHH
Confidence 111111 223333344444444467777766666666555433222 1 235667777777 5778999999
Q ss_pred HHHHHhcCCCCHHHHHHHHHcCC--hHHHHHHhhcCChHHHHHHHHHHhhhh
Q 001833 792 GALRRFTAPTNLEWQKRAAEAGV--IPKLVQLLEYGTTLTKEHAATSLARFS 841 (1008)
Q Consensus 792 ~aL~~L~~~~~~~~~~~l~~~g~--l~~Lv~lL~~~~~~v~~~Aa~aL~nLs 841 (1008)
..|..+-.. +.+.--.+ +..++.-|...+..+.+.-+..+.+..
T Consensus 324 d~ll~ik~v------ra~~f~~I~~~d~~l~~L~~d~~~v~rr~~~li~~s~ 369 (1005)
T KOG1949|consen 324 DMLLKIKAV------RAAKFWKICPMDHILVRLETDSRPVSRRLVSLIFNSF 369 (1005)
T ss_pred HHHHHHHhh------hhhhhhccccHHHHHHHHhccccHHHHHHHHHHHHhh
Confidence 988877642 11111222 334555555666566666666665544
No 339
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=50.85 E-value=10 Score=41.87 Aligned_cols=49 Identities=16% Similarity=0.308 Sum_probs=39.9
Q ss_pred CccccccccccccCCce-------ec-cCcccccHHHHHHHHhcC------CCCCCCcCccCC
Q 001833 263 LQSFYCPITRDVMVDPV-------ET-SSGQTFERSAIEKWFSDG------NNLCPLTMTVLD 311 (1008)
Q Consensus 263 ~~~~~cpi~~~~m~dpv-------~~-~~g~t~~r~~i~~w~~~~------~~~cp~~~~~l~ 311 (1008)
-+++.|-||.+.-.+++ |+ .|-|+||-.||.+|-... ...||.|+.+..
T Consensus 159 s~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~ 221 (344)
T KOG1039|consen 159 SSEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSS 221 (344)
T ss_pred cccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCccc
Confidence 47899999999999998 34 489999999999997422 467999977654
No 340
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=50.46 E-value=9.1 Score=43.06 Aligned_cols=34 Identities=21% Similarity=0.471 Sum_probs=28.3
Q ss_pred eeccCcccccHHHHHHHHhcCCCCCCCcCccCCC
Q 001833 279 VETSSGQTFERSAIEKWFSDGNNLCPLTMTVLDT 312 (1008)
Q Consensus 279 v~~~~g~t~~r~~i~~w~~~~~~~cp~~~~~l~~ 312 (1008)
++++|.|-|-|.|+++|.+.-.-.||+|+.+|+.
T Consensus 602 m~tPC~HifH~~CL~~WMd~ykl~CPvCR~pLPp 635 (636)
T KOG0828|consen 602 MLTPCHHIFHRQCLLQWMDTYKLICPVCRCPLPP 635 (636)
T ss_pred cccchHHHHHHHHHHHHHhhhcccCCccCCCCCC
Confidence 4458999999999999997545579999999864
No 341
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=50.16 E-value=2e+02 Score=28.23 Aligned_cols=145 Identities=12% Similarity=0.177 Sum_probs=76.2
Q ss_pred ChHHHHHhhccC-ChhHHHHHHHHHHHhccCCChhHHHhhhcccchHHHHHHhcCCCCHHHHHHHHHHHhcCCCChhhHH
Q 001833 680 AIPVLVQLCEHD-NENVRANAVKLFCCLVDDGDEAIIREHVGQKCLETLVTIIQSSHNEEEIASAMGILSKLPEVPQFTQ 758 (1008)
Q Consensus 680 ~i~~Lv~ll~~~-~~~v~~~a~~~L~~Ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~v~~~a~~~L~nL~~~~~~~~ 758 (1008)
.++.|+++++.+ +..+|..++++|+.|- .-++-..+...... +. .-....+.......+...+..+..++...
T Consensus 11 LL~~L~~iLk~e~s~~iR~E~lr~lGilG-ALDP~~~k~~~~~~--~~---~~~~~~~~~~~~~~l~~~~~~~~~ee~y~ 84 (160)
T PF11865_consen 11 LLDILLNILKTEQSQSIRREALRVLGILG-ALDPYKHKSIQKSL--DS---KSSENSNDESTDISLPMMGISPSSEEYYP 84 (160)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhhhcc-ccCcHHHhcccccC--Cc---cccccccccchhhHHhhccCCCchHHHHH
Confidence 366788888876 6899999999999996 33333332221110 00 00000111111112212222223333333
Q ss_pred HHHhcCCHHHHHHHhhCCCCCCCchhhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHHHhhcCChHHHHHHHHHHh
Q 001833 759 WLLDAGALPIVLNFLKNGRQNDPNRFQVVENAVGALRRFTAPTNLEWQKRAAEAGVIPKLVQLLEYGTTLTKEHAATSLA 838 (1008)
Q Consensus 759 ~l~~~g~l~~Lv~lL~~~~~~~~~~~~v~~~a~~aL~~L~~~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~v~~~Aa~aL~ 838 (1008)
. .++..|+..|++.+-. .-...++.++.++...........+ ..++|.++..++..++..++.-.+-|+
T Consensus 85 ~----vvi~~L~~iL~D~sLs-----~~h~~vv~ai~~If~~l~~~cv~~L--~~viP~~l~~i~~~~~~~~e~~~~qL~ 153 (160)
T PF11865_consen 85 T----VVINALMRILRDPSLS-----SHHTAVVQAIMYIFKSLGLKCVPYL--PQVIPIFLRVIRTCPDSLREFYFQQLA 153 (160)
T ss_pred H----HHHHHHHHHHHhhhhH-----HHHHHHHHHHHHHHHhcCcCchhHH--HHHhHHHHHHHHhCCHHHHHHHHHHHH
Confidence 3 3578888888884322 2223444444444321122222222 346899999999887788887777777
Q ss_pred hhh
Q 001833 839 RFS 841 (1008)
Q Consensus 839 nLs 841 (1008)
.|.
T Consensus 154 ~lv 156 (160)
T PF11865_consen 154 DLV 156 (160)
T ss_pred HHH
Confidence 665
No 342
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=50.06 E-value=85 Score=31.54 Aligned_cols=108 Identities=19% Similarity=0.266 Sum_probs=67.8
Q ss_pred HHHHHhhccCChhHHHHHHHHHHHhccCCChhHHHhhhccc-------------------chHHHHHHhcCCCCHHHHHH
Q 001833 682 PVLVQLCEHDNENVRANAVKLFCCLVDDGDEAIIREHVGQK-------------------CLETLVTIIQSSHNEEEIAS 742 (1008)
Q Consensus 682 ~~Lv~ll~~~~~~v~~~a~~~L~~Ls~~~~~~~~~~~~~~~-------------------~i~~Lv~lL~~~~~~~v~~~ 742 (1008)
+.+--++.++++.+|..|+.+|..|- ++........-+.+ .=..|+..|....+..+...
T Consensus 43 sLlt~il~Dp~~kvR~aA~~~l~~lL-~gsk~~L~~Ae~~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q 121 (182)
T PF13251_consen 43 SLLTCILKDPSPKVRAAAASALAALL-EGSKPFLAQAEESKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQ 121 (182)
T ss_pred chhHHHHcCCchhHHHHHHHHHHHHH-HccHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHH
Confidence 33444566778999999999999887 44443333322111 12235566666666677788
Q ss_pred HHHHHhcCCC-ChhhHHHHHhcCCH----HHHHHHhhCCCCCCCchhhHHHHHHHHHHHhcC
Q 001833 743 AMGILSKLPE-VPQFTQWLLDAGAL----PIVLNFLKNGRQNDPNRFQVVENAVGALRRFTA 799 (1008)
Q Consensus 743 a~~~L~nL~~-~~~~~~~l~~~g~l----~~Lv~lL~~~~~~~~~~~~v~~~a~~aL~~L~~ 799 (1008)
.+.+++.|.. .|-.+- +.|.+ ..+..++.+ .+.+++..++.+++.+..
T Consensus 122 ~lK~la~Lv~~tPY~rL---~~~ll~~~v~~v~~~l~~------~d~~v~v~~l~~~~~l~s 174 (182)
T PF13251_consen 122 LLKCLAVLVQATPYHRL---PPGLLTEVVTQVRPLLRH------RDPNVRVAALSCLGALLS 174 (182)
T ss_pred HHHHHHHHHccCChhhc---CHhHHHHHHHHHHHHHhc------CCCcHHHHHHHHHHHHHc
Confidence 8888888877 332221 33444 444455555 567788888888887765
No 343
>PF06416 DUF1076: Protein of unknown function (DUF1076); InterPro: IPR010489 This entry is represented by Bacteriophage 2851, Orf74 (EP2851_74). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.; PDB: 2KKX_A 2KKY_A.
Probab=48.93 E-value=13 Score=33.13 Aligned_cols=51 Identities=22% Similarity=0.427 Sum_probs=31.7
Q ss_pred CCccccccccccccCCceeccCc------ccccHHHHHHHHhcCCCCCCCcCccCCCC
Q 001833 262 PLQSFYCPITRDVMVDPVETSSG------QTFERSAIEKWFSDGNNLCPLTMTVLDTS 313 (1008)
Q Consensus 262 ~~~~~~cpi~~~~m~dpv~~~~g------~t~~r~~i~~w~~~~~~~cp~~~~~l~~~ 313 (1008)
|.+.+.|||++++=..-|.+-.. .-||..++.+-..+|.. =|.+|+|++..
T Consensus 37 ~ee~L~CPITL~iPe~GVFvkNs~~S~VC~LyD~~Al~~Lv~~~~~-HPLSREpit~s 93 (113)
T PF06416_consen 37 PEEHLTCPITLCIPENGVFVKNSSGSDVCSLYDKEALSRLVREGAP-HPLSREPITPS 93 (113)
T ss_dssp -CHHH-BTTTTC--SCEEEEECTTTSSEEEEEEHHHHHHHHHCT----TTT-----TT
T ss_pred CHHHcCCCeEEeecCCceEEecCCCCccceecCHHHHHHHHHcCCC-CCCccCCCChh
Confidence 56889999999999998888432 46999999999887653 68888888643
No 344
>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning
Probab=48.16 E-value=1.8e+02 Score=26.00 Aligned_cols=67 Identities=9% Similarity=-0.034 Sum_probs=49.6
Q ss_pred ccchHHHHHHHhcCCChHHHHHHHHHHHhhcCCcccHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHH
Q 001833 459 VQGCILLLVTMASSDDNQASRDAQELLENLSFSDDNVVQMAKANYFKHLLQRLSAGPESVKMRMATT 525 (1008)
Q Consensus 459 ~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~~~n~~~i~~~g~v~~Lv~~L~~~~~~~~~~aa~~ 525 (1008)
..+.+..|+.-.+.++......++..|..+..++.....+.+-|++..|-++=..-++..+...-.+
T Consensus 28 ~~~Ll~~LleWFnf~~~~~~~~VL~Ll~~L~~~~~a~~~l~~iG~~~fL~klr~~~~~~~~~~id~i 94 (98)
T PF14726_consen 28 ERLLLKQLLEWFNFPPVPMKEEVLALLLRLLKSPYAAQILRDIGAVRFLSKLRPNVEPNLQAEIDEI 94 (98)
T ss_pred HHHHHHHHHHHhCCCCCccHHHHHHHHHHHHhCcHHHHHHHHccHHHHHHHHHhcCCHHHHHHHHHH
Confidence 3556666777777777778888999999999999999999999999987666554455555444333
No 345
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=48.10 E-value=12 Score=40.18 Aligned_cols=45 Identities=16% Similarity=0.202 Sum_probs=36.4
Q ss_pred CccccccccccccCCceeccCcccccHHHHHHHHhcCCCCCCCcCc
Q 001833 263 LQSFYCPITRDVMVDPVETSSGQTFERSAIEKWFSDGNNLCPLTMT 308 (1008)
Q Consensus 263 ~~~~~cpi~~~~m~dpv~~~~g~t~~r~~i~~w~~~~~~~cp~~~~ 308 (1008)
-+|=.||||..==-..|+.+|||.-|..||.+++-.. ..|=.|+.
T Consensus 420 sEd~lCpICyA~pi~Avf~PC~H~SC~~CI~qHlmN~-k~CFfCkt 464 (489)
T KOG4692|consen 420 SEDNLCPICYAGPINAVFAPCSHRSCYGCITQHLMNC-KRCFFCKT 464 (489)
T ss_pred cccccCcceecccchhhccCCCCchHHHHHHHHHhcC-CeeeEecc
Confidence 4788999999877788999999999999999999643 34555543
No 346
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=47.96 E-value=6.9e+02 Score=31.70 Aligned_cols=126 Identities=17% Similarity=0.223 Sum_probs=78.4
Q ss_pred hhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHHHhhcCC-hHHHHHHHHHHhhhhhcCCCCCCCCCCCCcccccCC
Q 001833 784 FQVVENAVGALRRFTAPTNLEWQKRAAEAGVIPKLVQLLEYGT-TLTKEHAATSLARFSKNSLGLSRPIPKRKGFWCFSP 862 (1008)
Q Consensus 784 ~~v~~~a~~aL~~L~~~~~~~~~~~l~~~g~l~~Lv~lL~~~~-~~v~~~Aa~aL~nLs~~~~~l~~~~~~~~g~~~~~~ 862 (1008)
+.++..+.-+|++++-. +....+. .+|.|++-|...+ ..+|.+...+++.++.+
T Consensus 945 ~~vra~~vvTlakmcLa-h~~LaKr-----~~P~lvkeLe~~~~~aiRnNiV~am~D~C~~------------------- 999 (1529)
T KOG0413|consen 945 DKVRAVGVVTLAKMCLA-HDRLAKR-----LMPMLVKELEYNTAHAIRNNIVLAMGDICSS------------------- 999 (1529)
T ss_pred hHHHHHHHHHHHHHHhh-hhHHHHH-----HHHHHHHHHHhhhHHHHhcceeeeehhhHHH-------------------
Confidence 35667777788888864 4444332 4788888887543 35555555555555421
Q ss_pred CCCCcccccCcccCcccchhHhhccchHHHHHhhcCCChhhhHHHHHHHHhhhcccccchhhHHHHhcCc---hHHHHHH
Q 001833 863 PPEIGCQVHGGLCGIESSFCLLEANAVRPLVRVLEDPDHGACEASLDALVTLIEGERLQNGSKVLEDANA---IDRMVRF 939 (1008)
Q Consensus 863 ~~~~~c~vh~~~c~~~~~~~l~~~g~i~~Lv~lL~~~d~~v~~~al~aL~~L~~~~~~~~~~~~i~~~~~---i~~l~~l 939 (1008)
....-..-|+-+-..|.++++-||..++.-|.+|+... +.+-+| +..+..+
T Consensus 1000 ------------------YTam~d~YiP~I~~~L~Dp~~iVRrqt~ilL~rLLq~~--------~vKw~G~Lf~Rf~l~l 1053 (1529)
T KOG0413|consen 1000 ------------------YTAMTDRYIPMIAASLCDPSVIVRRQTIILLARLLQFG--------IVKWNGELFIRFMLAL 1053 (1529)
T ss_pred ------------------HHHHHHHhhHHHHHHhcCchHHHHHHHHHHHHHHHhhh--------hhhcchhhHHHHHHHH
Confidence 11122345777888999999999999999999999211 122222 2222332
Q ss_pred hcCCChHHHHHHHHHHHHHhcC
Q 001833 940 LSSPSPKLQEKALDSVERIFRL 961 (1008)
Q Consensus 940 l~~~~~~l~~~a~~~L~~l~~~ 961 (1008)
-+.++.++..|-..+..++..
T Consensus 1054 -~D~~edIr~~a~f~~~~vL~~ 1074 (1529)
T KOG0413|consen 1054 -LDANEDIRNDAKFYISEVLQS 1074 (1529)
T ss_pred -cccCHHHHHHHHHHHHHHHhh
Confidence 356778888887777766544
No 347
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=47.84 E-value=42 Score=31.82 Aligned_cols=71 Identities=17% Similarity=0.207 Sum_probs=52.7
Q ss_pred chhhhhhhhccCcchHHHHHHHHHHHHHHhhc-hhhhhhHhhcCchHHHHHHHcCCC--HHHHHHHHHHHHHhc
Q 001833 335 ITIASMKPKLVSTEVEEVLHCLEQLQDLCQQR-DQHREWVILENYIPKLIYLLGSKN--RDVRNRALIILHILV 405 (1008)
Q Consensus 335 ~~~~~~~~~l~~~~~~~~~~al~~L~~l~~~~-~~~r~~i~~~g~i~~L~~lL~s~~--~~~~~~Al~~L~~Ls 405 (1008)
..+..++.++.++++..+..|+.-|-.+.+.. ..-...+.+.+++..|..++.... +.++..++..+..-+
T Consensus 37 ~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~ 110 (133)
T smart00288 37 DAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWA 110 (133)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHH
Confidence 34667888999999999999998888777763 434566777888899998887643 237777777776543
No 348
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=47.13 E-value=3.9e+02 Score=28.64 Aligned_cols=168 Identities=15% Similarity=0.113 Sum_probs=94.6
Q ss_pred CcHHHHHHHHhcC--CHHHHHHHHHHHHHHcCChh--------hHHHHhhcCcHHHHHHHhccCCH----HHHHHHHHHH
Q 001833 502 NYFKHLLQRLSAG--PESVKMRMATTLAEMELTDH--------HKASLLEGNVLGPLLHLVSRGDI----QMKKVAVKAL 567 (1008)
Q Consensus 502 g~v~~Lv~~L~~~--~~~~~~~aa~~L~~Ls~~~~--------~k~~i~~~g~i~~Lv~lL~~~~~----~~~~~A~~aL 567 (1008)
|..+.+..++-.| +...-+.+...|..|..... +|-.+.-.+.+|.++.-+.++++ .....++..|
T Consensus 60 ~~f~Glq~Ll~KGL~Ss~t~e~tl~lL~~L~~~~~~~lig~~~~rll~~~la~LP~ll~~~d~~~~i~~~~~~~~~A~~L 139 (262)
T PF14225_consen 60 GNFEGLQPLLLKGLRSSSTYELTLRLLSRLTPLPDDPLIGDSQSRLLFLLLALLPRLLHAFDDPNPIQPDQECIEIAEAL 139 (262)
T ss_pred CCchhHHHHHhCccCCCCcHHHHHHHHHHHhcCCCccccCCCCccHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHH
Confidence 4445555554444 34455666777777644332 23333333456777777766661 3445666778
Q ss_pred HHhhCCCchhHHHHhcCChHHHHHHhcccCCCCcchHHHHHHHHHHHhccccccccCCcccccccchhHHHHHHHhhccC
Q 001833 568 RNLSSVPQNGLQMIKEGAVGPLVDLLLHHSSSSSSLREETATAIMHLAVSTMYQESSQTPVTLLESDKEIFMLFSLINLT 647 (1008)
Q Consensus 568 ~~L~~~~~~~~~i~~~G~v~~Ll~ll~~~~~~~~~~~~~a~~~L~nLa~~~~~~~~~~~~~~~l~~~~~i~~L~~ll~~~ 647 (1008)
..+|...+ .+.+..++.....+.- ....+-...+...+...-.... +...+.-++.++.++
T Consensus 140 a~~a~~~~-------~~~La~il~~ya~~~f--r~~~dfl~~v~~~l~~~f~P~~----------~~~~l~~Ll~lL~n~ 200 (262)
T PF14225_consen 140 AQVAEAQG-------LPNLARILSSYAKGRF--RDKDDFLSQVVSYLREAFFPDH----------EFQILTFLLGLLENG 200 (262)
T ss_pred HHHHHhCC-------CccHHHHHHHHHhcCC--CCHHHHHHHHHHHHHHHhCchh----------HHHHHHHHHHHHhCC
Confidence 88874211 1223334444433332 2334444444444443221111 235677789999999
Q ss_pred ChHHHHHHHHHHHHhccCCChhhHHHHhhhcCChHHHHHhhccCC
Q 001833 648 GPNVQQRILQTFNALCRSPSAGNIKTTLTQCSAIPVLVQLCEHDN 692 (1008)
Q Consensus 648 ~~~v~~~al~aL~~L~~~~~~~~~~~~i~e~~~i~~Lv~ll~~~~ 692 (1008)
.+.++...+.+|..+-...+... . ...+.+.+|+++++.+.
T Consensus 201 ~~w~~~~~L~iL~~ll~~~d~~~---~-~~~dlispllrlL~t~~ 241 (262)
T PF14225_consen 201 PPWLRRKTLQILKVLLPHVDMRS---P-HGADLISPLLRLLQTDL 241 (262)
T ss_pred cHHHHHHHHHHHHHHhccccCCC---C-cchHHHHHHHHHhCCcc
Confidence 99999999999999987643221 1 44456888888887764
No 349
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=47.10 E-value=60 Score=30.75 Aligned_cols=72 Identities=15% Similarity=0.179 Sum_probs=54.3
Q ss_pred chhhhhhhhccCcchHHHHHHHHHHHHHHhhchh-hhhhHhhcCchHHHHHHHcC---CCHHHHHHHHHHHHHhcc
Q 001833 335 ITIASMKPKLVSTEVEEVLHCLEQLQDLCQQRDQ-HREWVILENYIPKLIYLLGS---KNRDVRNRALIILHILVK 406 (1008)
Q Consensus 335 ~~~~~~~~~l~~~~~~~~~~al~~L~~l~~~~~~-~r~~i~~~g~i~~L~~lL~s---~~~~~~~~Al~~L~~Ls~ 406 (1008)
..+..++.++.++++..+..|+.-|-.+.+.... -...+++..++..|+.++.. .+..++..++..+...+.
T Consensus 37 ~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~ 112 (133)
T cd03561 37 EAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSE 112 (133)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHH
Confidence 4567788899999999999999888877776544 34556666677778888875 366788888888876543
No 350
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=45.84 E-value=1.2e+02 Score=32.98 Aligned_cols=141 Identities=15% Similarity=0.144 Sum_probs=72.1
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHhccCChhhHHHhhccCCcHHHHHHHhccChhHHHHHHHHHHHhccCchhhHHhhcccc
Q 001833 382 LIYLLGSKNRDVRNRALIILHILVKDSNDTKERLANGDDAVESIVRSLGRRIEERKLAVALLLELSTCNTLRDQIGDVQG 461 (1008)
Q Consensus 382 L~~lL~s~~~~~~~~Al~~L~~Ls~~~~~~k~~i~~~~g~i~~Lv~~L~~~~~~~~~A~~~L~~Ls~~~~~~~~i~~~~g 461 (1008)
.+..|.+.+-+....++..++.|+..+++....... .
T Consensus 93 ~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~-------------------------------------------~ 129 (334)
T KOG2933|consen 93 ALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLH-------------------------------------------E 129 (334)
T ss_pred HHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHH-------------------------------------------H
Confidence 444566666666677777777777666433322221 2
Q ss_pred hHHHHHHHhcCCChHHHHHHHHHHHhhcCCcccHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHHcCChhhHHHHhh
Q 001833 462 CILLLVTMASSDDNQASRDAQELLENLSFSDDNVVQMAKANYFKHLLQRLSAGPESVKMRMATTLAEMELTDHHKASLLE 541 (1008)
Q Consensus 462 ~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~~~n~~~i~~~g~v~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~~~~k~~i~~ 541 (1008)
.|..+++-+++....+-..|+.++..+..+-.+...-...+.+..|+..-...+.-+++.|-.+|..+...-..
T Consensus 130 vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~~~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp------ 203 (334)
T KOG2933|consen 130 VIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSIDQELDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTP------ 203 (334)
T ss_pred HHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccCh------
Confidence 23334444444444455555555555533222222111122222222211223445677777777766432211
Q ss_pred cCcHHHHHHHhccCCHHHHHHHHHHHHHhh
Q 001833 542 GNVLGPLLHLVSRGDIQMKKVAVKALRNLS 571 (1008)
Q Consensus 542 ~g~i~~Lv~lL~~~~~~~~~~A~~aL~~L~ 571 (1008)
.-+++.|+..+...++.++..++.+..+..
T Consensus 204 ~~~L~~L~~~~~~~n~r~r~~a~~~~~~~v 233 (334)
T KOG2933|consen 204 QKLLRKLIPILQHSNPRVRAKAALCFSRCV 233 (334)
T ss_pred HHHHHHHHHHHhhhchhhhhhhhccccccc
Confidence 125667777788888888888777655543
No 351
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=45.77 E-value=75 Score=30.36 Aligned_cols=73 Identities=12% Similarity=0.209 Sum_probs=57.9
Q ss_pred hhHHHHHHHhhccCChHHHHHHHHHHHHhccCCChhhHHHHhhhcCChHHHHHhhcc------CChhHHHHHHHHHHHhc
Q 001833 634 DKEIFMLFSLINLTGPNVQQRILQTFNALCRSPSAGNIKTTLTQCSAIPVLVQLCEH------DNENVRANAVKLFCCLV 707 (1008)
Q Consensus 634 ~~~i~~L~~ll~~~~~~v~~~al~aL~~L~~~~~~~~~~~~i~e~~~i~~Lv~ll~~------~~~~v~~~a~~~L~~Ls 707 (1008)
..++..+..-+++.+|.++..|+..|-.+..+ .+..+...+...+++..|+.++.. .+..++...+.++..-+
T Consensus 37 k~a~rai~krl~~~n~~v~l~AL~LLe~~vkN-CG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 115 (139)
T cd03567 37 QLAVRLLAHKIQSPQEKEALQALTVLEACMKN-CGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWT 115 (139)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH-cCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHH
Confidence 35677777788888999999999988888775 456778888888899999999953 36788888888776654
No 352
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=45.05 E-value=10 Score=41.08 Aligned_cols=26 Identities=15% Similarity=0.477 Sum_probs=20.5
Q ss_pred cccccccccccC---CceeccCcccccHH
Q 001833 265 SFYCPITRDVMV---DPVETSSGQTFERS 290 (1008)
Q Consensus 265 ~~~cpi~~~~m~---dpv~~~~g~t~~r~ 290 (1008)
.|.||+|++.|. .....+.||+||..
T Consensus 2 ~~~CP~C~~~l~~~~~~~~C~~~h~fd~a 30 (272)
T PRK11088 2 SYQCPLCHQPLTLEENSWICPQNHQFDCA 30 (272)
T ss_pred cccCCCCCcchhcCCCEEEcCCCCCCccc
Confidence 389999999996 44566678999874
No 353
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=45.00 E-value=71 Score=30.55 Aligned_cols=69 Identities=16% Similarity=0.247 Sum_probs=55.5
Q ss_pred cchHHHHHhhcCCChhhhHHHHHHHHhhh-cccccchhhHHHHhcCchHHHHHHhcC------CChHHHHHHHHHHHH
Q 001833 887 NAVRPLVRVLEDPDHGACEASLDALVTLI-EGERLQNGSKVLEDANAIDRMVRFLSS------PSPKLQEKALDSVER 957 (1008)
Q Consensus 887 g~i~~Lv~lL~~~d~~v~~~al~aL~~L~-~~~~~~~~~~~i~~~~~i~~l~~ll~~------~~~~l~~~a~~~L~~ 957 (1008)
.++..+..-|.++++.++..|+..|-.++ +.. ..+...+...+.+..+++++.. .++.|+++.+.++..
T Consensus 38 ~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG--~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~ 113 (139)
T cd03567 38 LAVRLLAHKIQSPQEKEALQALTVLEACMKNCG--ERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYS 113 (139)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcC--HHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHH
Confidence 46888888899999999999999999998 322 2566777778888889998853 468999999998854
No 354
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=44.40 E-value=77 Score=30.01 Aligned_cols=72 Identities=18% Similarity=0.179 Sum_probs=56.0
Q ss_pred ChHHHHHhhccCChhHHHHHHHHHHHhccCCChhHHHhhhcccchHHHHHHhcCC--CCHHHHHHHHHHHhcCC
Q 001833 680 AIPVLVQLCEHDNENVRANAVKLFCCLVDDGDEAIIREHVGQKCLETLVTIIQSS--HNEEEIASAMGILSKLP 751 (1008)
Q Consensus 680 ~i~~Lv~ll~~~~~~v~~~a~~~L~~Ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~--~~~~v~~~a~~~L~nL~ 751 (1008)
++..|..-+.++++.++..|+.+|-.+..+.......++.....+..|+.++... .+..++..++..+.+..
T Consensus 38 a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~ 111 (133)
T cd03561 38 AARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWS 111 (133)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHH
Confidence 4667777888999999999999999998665555666666668888899999873 56678887777776554
No 355
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=43.61 E-value=46 Score=29.28 Aligned_cols=68 Identities=15% Similarity=0.134 Sum_probs=53.5
Q ss_pred HHHHHHHhhCCCCCCCchhhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHHHhhcCChHHHHHHHHHHhhhhh
Q 001833 766 LPIVLNFLKNGRQNDPNRFQVVENAVGALRRFTAPTNLEWQKRAAEAGVIPKLVQLLEYGTTLTKEHAATSLARFSK 842 (1008)
Q Consensus 766 l~~Lv~lL~~~~~~~~~~~~v~~~a~~aL~~L~~~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~v~~~Aa~aL~nLs~ 842 (1008)
+...+..+.+ +..++|..++..|.++....+ .......+++..+...|++.++-+-.+|..+|..++.
T Consensus 5 ~~~al~~L~d------p~~PvRa~gL~~L~~Li~~~~---~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~ 72 (92)
T PF10363_consen 5 LQEALSDLND------PLPPVRAHGLVLLRKLIESKS---EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALAD 72 (92)
T ss_pred HHHHHHHccC------CCcchHHHHHHHHHHHHHcCC---cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHH
Confidence 3445566666 578899999999999998533 2233345778888999999999999999999999984
No 356
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=43.20 E-value=18 Score=30.19 Aligned_cols=28 Identities=21% Similarity=0.633 Sum_probs=23.5
Q ss_pred cCcccccHHHHHHHHhcCCCCCCCcCccC
Q 001833 282 SSGQTFERSAIEKWFSDGNNLCPLTMTVL 310 (1008)
Q Consensus 282 ~~g~t~~r~~i~~w~~~~~~~cp~~~~~l 310 (1008)
-|.|.|--.||.+|++. ...||..+|+.
T Consensus 53 ~CnHaFH~HCI~rWL~T-k~~CPld~q~w 80 (88)
T COG5194 53 VCNHAFHDHCIYRWLDT-KGVCPLDRQTW 80 (88)
T ss_pred ecchHHHHHHHHHHHhh-CCCCCCCCcee
Confidence 47799999999999986 55699998764
No 357
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=42.85 E-value=67 Score=30.44 Aligned_cols=71 Identities=17% Similarity=0.192 Sum_probs=54.4
Q ss_pred ChHHHHHhhccCChhHHHHHHHHHHHhccCCChhHHHhhhcccchHHHHHHhcCCCCHH-HHHHHHHHHhcC
Q 001833 680 AIPVLVQLCEHDNENVRANAVKLFCCLVDDGDEAIIREHVGQKCLETLVTIIQSSHNEE-EIASAMGILSKL 750 (1008)
Q Consensus 680 ~i~~Lv~ll~~~~~~v~~~a~~~L~~Ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~-v~~~a~~~L~nL 750 (1008)
++..|..-+.++++.++..|+.+|-.+..+.......++...+.+..|+.++....... ++..++..+..-
T Consensus 38 a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W 109 (133)
T smart00288 38 AVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEW 109 (133)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHH
Confidence 45667777888999999999999999986656666677777789999999998875433 777666665443
No 358
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=42.63 E-value=2.8e+02 Score=29.42 Aligned_cols=80 Identities=16% Similarity=0.222 Sum_probs=49.9
Q ss_pred HhcCcHHHHHHHHhcCCHHHHHHHHHHHHHHcCChhhHH-HHhhcCcHHHHHHHhccC--CHHHHHHHHHHHHHhhC-CC
Q 001833 499 AKANYFKHLLQRLSAGPESVKMRMATTLAEMELTDHHKA-SLLEGNVLGPLLHLVSRG--DIQMKKVAVKALRNLSS-VP 574 (1008)
Q Consensus 499 ~~~g~v~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~~~~k~-~i~~~g~i~~Lv~lL~~~--~~~~~~~A~~aL~~L~~-~~ 574 (1008)
.+..++++++.+++.++... -..++-....+-.+. ..+-.|-++.|-+++.++ +.-+|..|+.+|..+.. ++
T Consensus 70 re~~A~~~li~l~~~~~~~~----~~l~GD~~tE~l~~ilasv~~G~~~~L~~li~~~~~~~yvR~aa~~aL~~l~~~~~ 145 (249)
T PF06685_consen 70 REERALPPLIRLFSQDDDFL----EDLFGDFITEDLPRILASVGDGDIEPLKELIEDPDADEYVRMAAISALAFLVHEGP 145 (249)
T ss_pred hhhhhHHHHHHHHcCCcchH----HHHHcchhHhHHHHHHHHHhCCCHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHcCC
Confidence 45678999999997664311 111111111111111 222357788888888877 46789999999999984 56
Q ss_pred chhHHHHh
Q 001833 575 QNGLQMIK 582 (1008)
Q Consensus 575 ~~~~~i~~ 582 (1008)
..|..+++
T Consensus 146 ~~Re~vi~ 153 (249)
T PF06685_consen 146 ISREEVIQ 153 (249)
T ss_pred CCHHHHHH
Confidence 66777665
No 359
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=41.39 E-value=31 Score=28.79 Aligned_cols=47 Identities=21% Similarity=0.261 Sum_probs=21.9
Q ss_pred cccccccccc-----CCceecc--CcccccHHHHHHHHhcCCCCCCCcCccCCC
Q 001833 266 FYCPITRDVM-----VDPVETS--SGQTFERSAIEKWFSDGNNLCPLTMTVLDT 312 (1008)
Q Consensus 266 ~~cpi~~~~m-----~dpv~~~--~g~t~~r~~i~~w~~~~~~~cp~~~~~l~~ 312 (1008)
-+|.||++-. -+|.+.+ ||.-.||.|.+--..+|+..||.++.+...
T Consensus 10 qiCqiCGD~VGl~~~Ge~FVAC~eC~fPvCr~CyEYErkeg~q~CpqCkt~ykr 63 (80)
T PF14569_consen 10 QICQICGDDVGLTENGEVFVACHECAFPVCRPCYEYERKEGNQVCPQCKTRYKR 63 (80)
T ss_dssp -B-SSS--B--B-SSSSB--S-SSS-----HHHHHHHHHTS-SB-TTT--B---
T ss_pred cccccccCccccCCCCCEEEEEcccCCccchhHHHHHhhcCcccccccCCCccc
Confidence 4677777643 3666653 678889999998888999999999877653
No 360
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=41.29 E-value=18 Score=38.64 Aligned_cols=50 Identities=18% Similarity=0.272 Sum_probs=33.6
Q ss_pred ccccccccccccC--Ccee--ccCcccccHHHHHHHHhcCCCCCCCcCccCCCCC
Q 001833 264 QSFYCPITRDVMV--DPVE--TSSGQTFERSAIEKWFSDGNNLCPLTMTVLDTSI 314 (1008)
Q Consensus 264 ~~~~cpi~~~~m~--dpv~--~~~g~t~~r~~i~~w~~~~~~~cp~~~~~l~~~~ 314 (1008)
+|+ ||+|.|.|- |--. .+||+..||-|--.--..-+..||-|+...+..+
T Consensus 14 ed~-cplcie~mditdknf~pc~cgy~ic~fc~~~irq~lngrcpacrr~y~den 67 (480)
T COG5175 14 EDY-CPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQNLNGRCPACRRKYDDEN 67 (480)
T ss_pred ccc-CcccccccccccCCcccCCcccHHHHHHHHHHHhhccCCChHhhhhccccc
Confidence 455 999999986 3222 4689988887743322223567999988776544
No 361
>PLN02189 cellulose synthase
Probab=41.15 E-value=20 Score=45.15 Aligned_cols=46 Identities=24% Similarity=0.232 Sum_probs=37.1
Q ss_pred ccccccccc-----cCCceecc--CcccccHHHHHHHHhcCCCCCCCcCccCC
Q 001833 266 FYCPITRDV-----MVDPVETS--SGQTFERSAIEKWFSDGNNLCPLTMTVLD 311 (1008)
Q Consensus 266 ~~cpi~~~~-----m~dpv~~~--~g~t~~r~~i~~w~~~~~~~cp~~~~~l~ 311 (1008)
-+|+||++- +-+|-+.+ ||.-.||.|-+--.++|+..||.|+.+..
T Consensus 35 ~~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cyeyer~eg~q~CpqCkt~Y~ 87 (1040)
T PLN02189 35 QVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREGTQNCPQCKTRYK 87 (1040)
T ss_pred ccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchh
Confidence 489999874 55777764 78889999997777789999999987765
No 362
>PF12252 SidE: Dot/Icm substrate protein; InterPro: IPR021014 This entry represents bacterial proteins that are typically between 397 and 1543 amino acids in length including SidE protein in the Dot/Icm pathway of Legionella pneumophila bacteria. There is little literature describing the family.
Probab=40.92 E-value=5.9e+02 Score=32.47 Aligned_cols=135 Identities=14% Similarity=0.292 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHhhhHHHHHHHHHHHHHHHHHhccCCCCcc--ccchHHHHHHHHHHHHHhhhh---hcc
Q 001833 80 REIKGAKELTTECSKRNKVYLLMNCRAIVKRLKDTAREISQALGILPLASL--DLSTDIIEEIEKVCDNMQRAE---FRA 154 (1008)
Q Consensus 80 ~~l~~a~~Ll~~c~~~Skl~l~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~--~~s~~~~e~~~~~~~~~~~~~---~~~ 154 (1008)
..|+..|.+++. +--|--+.+|+.-+.+ +.++..+ ++|..||.+.= .||.++++||..+++++..-+ ..+
T Consensus 1015 ~QMDaIKqmIek---Kv~L~~L~qCqdALeK-qnIa~AL-~ALn~IPSdKEms~Is~eLReQIq~~KQ~LesLQRAV~TP 1089 (1439)
T PF12252_consen 1015 AQMDAIKQMIEK---KVVLQALTQCQDALEK-QNIAGAL-QALNNIPSDKEMSKISSELREQIQSVKQDLESLQRAVVTP 1089 (1439)
T ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHHHHh-hhHHHHH-HHHhcCCchhhhhhhhHHHHHHHHHHHHHHHHHHHhhccc
Confidence 345566666653 1112245566555544 3333333 67778886531 289999999999998865433 222
Q ss_pred chh-HHHHHHHHHhhhh-----------ccCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHhhhhhhhHHH
Q 001833 155 AIA-EEEILEKVESGIQ-----------ERNVDRSYANHLLSLIADAVGISTERSALKKEFDEFKSEIENSRMRKDQAEA 222 (1008)
Q Consensus 155 ~~~-~~~~~~~~~~~~~-----------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~~~~~~~~~ 222 (1008)
-.. ++......+.++. ....|.+..+.-+. +-..|++|+.-|+.|+-.+..+.+.-+-
T Consensus 1090 Vvtd~eKvr~rYe~LI~~iTKrIt~LEk~k~~~l~~ikK~ia----------~lnnlqqElklLRnEK~Rmh~~~dkVDF 1159 (1439)
T PF12252_consen 1090 VVTDAEKVRVRYETLITDITKRITDLEKAKLDNLDSIKKAIA----------NLNNLQQELKLLRNEKIRMHSGTDKVDF 1159 (1439)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHH----------HHHHHHHHHHHHHhHHHhhccCCCcccH
Confidence 222 2222222222211 11122222222221 2246778888888888777766655444
Q ss_pred HHHHHHH
Q 001833 223 VQMDQII 229 (1008)
Q Consensus 223 ~~~~~~~ 229 (1008)
..++++-
T Consensus 1160 SDIEkLE 1166 (1439)
T PF12252_consen 1160 SDIEKLE 1166 (1439)
T ss_pred HHHHHHH
Confidence 4455443
No 363
>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning
Probab=40.25 E-value=77 Score=28.23 Aligned_cols=69 Identities=19% Similarity=0.286 Sum_probs=55.8
Q ss_pred hccchHHHHHhhcCCChhhhHHHHHHHHhhh-cccccchhhHHHHhcCchHHHHHHhcCCChHHHHHHHHHHHH
Q 001833 885 EANAVRPLVRVLEDPDHGACEASLDALVTLI-EGERLQNGSKVLEDANAIDRMVRFLSSPSPKLQEKALDSVER 957 (1008)
Q Consensus 885 ~~g~i~~Lv~lL~~~d~~v~~~al~aL~~L~-~~~~~~~~~~~i~~~~~i~~l~~ll~~~~~~l~~~a~~~L~~ 957 (1008)
+...+..|++.+..++....+.++.-|..++ .+ .+...+.+.|+++.+-++-..-++..+...-.++.+
T Consensus 28 ~~~Ll~~LleWFnf~~~~~~~~VL~Ll~~L~~~~----~a~~~l~~iG~~~fL~klr~~~~~~~~~~id~il~~ 97 (98)
T PF14726_consen 28 ERLLLKQLLEWFNFPPVPMKEEVLALLLRLLKSP----YAAQILRDIGAVRFLSKLRPNVEPNLQAEIDEILDQ 97 (98)
T ss_pred HHHHHHHHHHHhCCCCCccHHHHHHHHHHHHhCc----HHHHHHHHccHHHHHHHHHhcCCHHHHHHHHHHHhc
Confidence 3457788888888888888899999999988 43 788899999999998888877788887777766643
No 364
>KOG4231 consensus Intracellular membrane-bound Ca2+-independent phospholipase A2 [Lipid transport and metabolism]
Probab=39.99 E-value=31 Score=39.31 Aligned_cols=63 Identities=19% Similarity=0.245 Sum_probs=42.2
Q ss_pred HhccCCHHHHHHHHHHHHHhhCCCchhHHHHhc-CChHHHHHHhcccCCCCcchHHHHHHHHHHHhc
Q 001833 551 LVSRGDIQMKKVAVKALRNLSSVPQNGLQMIKE-GAVGPLVDLLLHHSSSSSSLREETATAIMHLAV 616 (1008)
Q Consensus 551 lL~~~~~~~~~~A~~aL~~L~~~~~~~~~i~~~-G~v~~Ll~ll~~~~~~~~~~~~~a~~~L~nLa~ 616 (1008)
+....++++++.|..++.+++-+.+||...+-. ..-..+++++..+. +.+-+.+..++..+..
T Consensus 336 ~~a~~n~~l~~qa~~~v~~~~~~~~~r~~~~tsp~l~~~~~~~i~~~~---~~~~~~~~~a~~~~~~ 399 (763)
T KOG4231|consen 336 LCAHKNPELQRQALLAVGNLAFCLENRRILITSPSLRELLMRLIVTPE---PRVNKAAARALAILGE 399 (763)
T ss_pred HhcccChHHHHHHHHHHHHheecccccccccCChHHHHHHHHHhcccc---cccchhhhHHHHHhhh
Confidence 344568999999999999999888888765533 23345566665544 4455556666655544
No 365
>PLN02195 cellulose synthase A
Probab=38.32 E-value=21 Score=44.54 Aligned_cols=45 Identities=11% Similarity=0.205 Sum_probs=36.8
Q ss_pred ccccccc-----ccCCceecc--CcccccHHHHHHHHhcCCCCCCCcCccCC
Q 001833 267 YCPITRD-----VMVDPVETS--SGQTFERSAIEKWFSDGNNLCPLTMTVLD 311 (1008)
Q Consensus 267 ~cpi~~~-----~m~dpv~~~--~g~t~~r~~i~~w~~~~~~~cp~~~~~l~ 311 (1008)
.|.||++ .+-+|-+.+ ||.-.||.|-+---++|+..||+|+.+..
T Consensus 8 ~c~~cgd~~~~~~~g~~fvaC~eC~~pvCrpCyeyer~eg~q~CpqCkt~Yk 59 (977)
T PLN02195 8 ICATCGEEVGVDSNGEAFVACHECSYPLCKACLEYEIKEGRKVCLRCGGPYD 59 (977)
T ss_pred cceecccccCcCCCCCeEEEeccCCCccccchhhhhhhcCCccCCccCCccc
Confidence 6888877 566888774 78889999997666789999999988776
No 366
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=37.36 E-value=62 Score=30.94 Aligned_cols=70 Identities=26% Similarity=0.341 Sum_probs=54.2
Q ss_pred ChHHHHHhhccCChhHHHHHHHHHHHhccCCChhHHHhhhcccchHHHHHHhcCCCCHH---HHHHHHHHHhc
Q 001833 680 AIPVLVQLCEHDNENVRANAVKLFCCLVDDGDEAIIREHVGQKCLETLVTIIQSSHNEE---EIASAMGILSK 749 (1008)
Q Consensus 680 ~i~~Lv~ll~~~~~~v~~~a~~~L~~Ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~---v~~~a~~~L~n 749 (1008)
++..|..-+.++++.++..|+.+|-.+..++......++.....+..|+.++.+..... ++..++..|..
T Consensus 43 a~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~ 115 (140)
T PF00790_consen 43 AARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQE 115 (140)
T ss_dssp HHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHH
Confidence 46667777888999999999999999986665666677777789999999998765544 67766665544
No 367
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=37.12 E-value=7.8e+02 Score=29.24 Aligned_cols=227 Identities=14% Similarity=0.127 Sum_probs=119.1
Q ss_pred ccCChhHHHHHHHHHHHhccCCChhHHHhhhcccchHHHHHHhc--C--------CCCHHHHHHHHHHHhcCCCChhhHH
Q 001833 689 EHDNENVRANAVKLFCCLVDDGDEAIIREHVGQKCLETLVTIIQ--S--------SHNEEEIASAMGILSKLPEVPQFTQ 758 (1008)
Q Consensus 689 ~~~~~~v~~~a~~~L~~Ls~~~~~~~~~~~~~~~~i~~Lv~lL~--~--------~~~~~v~~~a~~~L~nL~~~~~~~~ 758 (1008)
.+++.++...|-..|..+... +-+...+..|..+.. . +-++..+...+..|+.= .
T Consensus 247 ad~~~~V~~~ae~~LKr~~~~--------~ed~~~V~~L~~Ly~G~~~~~~~~~~pa~~~lq~kIL~~L~kS---~---- 311 (501)
T PF13001_consen 247 ADSNSSVSDRAEDLLKRLSVS--------LEDPDLVDRLFDLYLGKGIPPENGRPPASPRLQEKILSLLSKS---V---- 311 (501)
T ss_pred eCCcchHHHHHHHHHhhcCCC--------CCCHHHHHHHHHHHHhcCCchhcCCCCCCHHHHHHHHHHHHHh---H----
Confidence 445677777788888777622 123356777777665 2 12334554444444331 1
Q ss_pred HHHhcCCHHHHHHHhhCCCCCCCchhhHHHHHHHHH---HHhcCCCCHHHH---HHHHHcCChHHHHH----HhhcCChH
Q 001833 759 WLLDAGALPIVLNFLKNGRQNDPNRFQVVENAVGAL---RRFTAPTNLEWQ---KRAAEAGVIPKLVQ----LLEYGTTL 828 (1008)
Q Consensus 759 ~l~~~g~l~~Lv~lL~~~~~~~~~~~~v~~~a~~aL---~~L~~~~~~~~~---~~l~~~g~l~~Lv~----lL~~~~~~ 828 (1008)
......+..+++...+--+......++..++..+ .+......+... ......++.|.+-. --...+..
T Consensus 312 --~Aa~~~~~~~~i~~~~l~~~~~~~klk~~~l~F~~~~~~~~~~~~~~~l~~l~~~i~~~g~p~~~~~~~~~~~~~~~~ 389 (501)
T PF13001_consen 312 --IAATSFPNILQIVFDGLYSDNTNSKLKSLALQFIRGSSWIFKHISPQILKLLRPVILSQGWPLIQDSSSQSNSSEDIE 389 (501)
T ss_pred --HHHhCCccHHHHHhccccCCccccccchhcchhhhcchHHhhhcCHHHHHHHHHHHHhcCccccccccccCCCcccHH
Confidence 1112223333333332221112345555555555 444333234333 33445677776610 11134569
Q ss_pred HHHHHHHHHhhhhhcCCCCCCCCCCCCcccccCCCCCCcccccCcccCcccchhHhhccchHHHHHhhcCCChhhhHHHH
Q 001833 829 TKEHAATSLARFSKNSLGLSRPIPKRKGFWCFSPPPEIGCQVHGGLCGIESSFCLLEANAVRPLVRVLEDPDHGACEASL 908 (1008)
Q Consensus 829 v~~~Aa~aL~nLs~~~~~l~~~~~~~~g~~~~~~~~~~~c~vh~~~c~~~~~~~l~~~g~i~~Lv~lL~~~d~~v~~~al 908 (1008)
.|..+-.+|+.|+...+.+-. -+.+.+.-|.+-|.+++++++.+.-
T Consensus 390 lR~~aYe~lG~L~~~~p~l~~----------------------------------~d~~li~~LF~sL~~~~~evr~sIq 435 (501)
T PF13001_consen 390 LRSLAYETLGLLAKRAPSLFS----------------------------------KDLSLIEFLFDSLEDESPEVRVSIQ 435 (501)
T ss_pred HHHHHHHHHHHHHccCccccc----------------------------------ccHHHHHHHHHHhhCcchHHHHHHH
Confidence 999999999999965543210 1235678888888888999999999
Q ss_pred HHHHhhh-cccccchhhHHHHhcCchHH-HHHHhcCCChHHHHHHHHHHHHHhcChHHHHH
Q 001833 909 DALVTLI-EGERLQNGSKVLEDANAIDR-MVRFLSSPSPKLQEKALDSVERIFRLPEFKQK 967 (1008)
Q Consensus 909 ~aL~~L~-~~~~~~~~~~~i~~~~~i~~-l~~ll~~~~~~l~~~a~~~L~~l~~~~~~~~~ 967 (1008)
+||..++ .=..... ............ +.....+.....|-.|+.-....|...+...+
T Consensus 436 eALssl~~af~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~R~~avk~an~~fpf~d~~aR 495 (501)
T PF13001_consen 436 EALSSLAPAFKDLPD-DEDEQKRLLLELLLLSYIQSEVRSCRYAAVKYANACFPFSDVPAR 495 (501)
T ss_pred HHHHHHHHHHhcccc-chhHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhCCccchHHH
Confidence 9999998 1100000 000000001111 11111334456777777777777776665443
No 368
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=36.80 E-value=1.2e+03 Score=31.20 Aligned_cols=75 Identities=12% Similarity=0.031 Sum_probs=54.2
Q ss_pred cCCHHHHHHHhhCCCCCCCchhhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHHHhhcCChHHHHHHHHHHhhhhh
Q 001833 763 AGALPIVLNFLKNGRQNDPNRFQVVENAVGALRRFTAPTNLEWQKRAAEAGVIPKLVQLLEYGTTLTKEHAATSLARFSK 842 (1008)
Q Consensus 763 ~g~l~~Lv~lL~~~~~~~~~~~~v~~~a~~aL~~L~~~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~v~~~Aa~aL~nLs~ 842 (1008)
.|++|.|-.-|.+ .+...|..|+..++.+... +..+-.=-.......++.-+.+.+++||..+.....++-.
T Consensus 258 ~~vip~l~~eL~s------e~~~~Rl~a~~lvg~~~~~--~~~~l~~~~~~~~~~fl~r~~D~~~~vR~~~v~~~~~~l~ 329 (1266)
T KOG1525|consen 258 LAVIPQLEFELLS------EQEEVRLKAVKLVGRMFSD--KDSQLSETYDDLWSAFLGRFNDISVEVRMECVESIKQCLL 329 (1266)
T ss_pred HHHHHHHHHHHhc------chHHHHHHHHHHHHHHHhc--chhhhcccchHHHHHHHHHhccCChhhhhhHHHHhHHHHh
Confidence 3677888888887 6889999999999999983 4433221122344555666668899999999999888876
Q ss_pred cCC
Q 001833 843 NSL 845 (1008)
Q Consensus 843 ~~~ 845 (1008)
+.+
T Consensus 330 ~~~ 332 (1266)
T KOG1525|consen 330 NNP 332 (1266)
T ss_pred cCc
Confidence 543
No 369
>KOG1566 consensus Conserved protein Mo25 [Function unknown]
Probab=36.75 E-value=6e+02 Score=27.82 Aligned_cols=142 Identities=13% Similarity=0.094 Sum_probs=94.8
Q ss_pred hHHHHHHHHHHHhhcCCcccHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHHcC-ChhhHHHHhhcC---c-HHHHH
Q 001833 475 NQASRDAQELLENLSFSDDNVVQMAKANYFKHLLQRLSAGPESVKMRMATTLAEMEL-TDHHKASLLEGN---V-LGPLL 549 (1008)
Q Consensus 475 ~~~~~~a~~aL~~Ls~~~~n~~~i~~~g~v~~Lv~~L~~~~~~~~~~aa~~L~~Ls~-~~~~k~~i~~~g---~-i~~Lv 549 (1008)
++....+...|.....++.-...+....-+......+..++=++...|..+...+-. .......+.... . ...--
T Consensus 139 ~~iaL~cg~mlrEcirhe~LakiiL~s~~~~~FF~~vq~p~FdiasdA~~tfK~llt~Hk~~vaEfl~~n~d~ff~e~~~ 218 (342)
T KOG1566|consen 139 PEIALTCGNMLRECIRHEFLAKIILESTNFEKFFLYVQLPNFDIASDAFSTFKELLTRHKSVVAEFLIRNYDNFFAEVYE 218 (342)
T ss_pred hHHHHHHHHHHHHHHhhHHHHHHHHcchhHHHHHHHHhccchHHHHHHHHHHHHHHHHhHHHHHHHHHhChhhhHHHHHH
Confidence 444444444444444555555566666677777777777766777777777776633 222222222222 2 33356
Q ss_pred HHhccCCHHHHHHHHHHHHHhhCCCchhHHHHhc----CChHHHHHHhcccCCCCcchHHHHHHHHHHHhcccc
Q 001833 550 HLVSRGDIQMKKVAVKALRNLSSVPQNGLQMIKE----GAVGPLVDLLLHHSSSSSSLREETATAIMHLAVSTM 619 (1008)
Q Consensus 550 ~lL~~~~~~~~~~A~~aL~~L~~~~~~~~~i~~~----G~v~~Ll~ll~~~~~~~~~~~~~a~~~L~nLa~~~~ 619 (1008)
.++++++--.+..+.+.|+.+-.+..|...|.+- ..+..++.+|++.+ ..+|-+|-.+.+-...++.
T Consensus 219 ~Ll~s~Nyvtkrqs~kllg~llldr~N~~~M~kYiss~enLKlmM~llrdks---kniQ~eAFhvFKvfvAnpn 289 (342)
T KOG1566|consen 219 KLLRSENYVTKRQSLKLLGELLLDRSNSAVMTKYISSPENLKLMMNLLRDKS---KNIQLEAFHVFKVFVANPN 289 (342)
T ss_pred HHhcccceehHHHHHHhHHHHHhCCCcHHHHHHHhcCHHHHHHHHHHhhCcc---ccchHHHHHHHHHHhcCCC
Confidence 7889999999999999999999877777666432 45778888888766 6789999999888877553
No 370
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=36.74 E-value=1.2e+02 Score=29.04 Aligned_cols=69 Identities=17% Similarity=0.274 Sum_probs=53.0
Q ss_pred cchHHHHHhhcCCChhhhHHHHHHHHhhh-cccccchhhHHHHhcCchHHHHHHhc-CCChH---HHHHHHHHHHH
Q 001833 887 NAVRPLVRVLEDPDHGACEASLDALVTLI-EGERLQNGSKVLEDANAIDRMVRFLS-SPSPK---LQEKALDSVER 957 (1008)
Q Consensus 887 g~i~~Lv~lL~~~d~~v~~~al~aL~~L~-~~~~~~~~~~~i~~~~~i~~l~~ll~-~~~~~---l~~~a~~~L~~ 957 (1008)
.++..|-.-|.++++.++..|+..|-.++ +.. ......+.....+..+.+++. ..... |+++++.++..
T Consensus 42 ea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg--~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~ 115 (140)
T PF00790_consen 42 EAARALRKRLKHGNPNVQLLALTLLDALVKNCG--PRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQE 115 (140)
T ss_dssp HHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSH--HHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCC--HHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHH
Confidence 46788888889999999999999999998 432 255666667777888998874 33433 89999988844
No 371
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=36.55 E-value=1.6e+02 Score=33.34 Aligned_cols=143 Identities=15% Similarity=0.124 Sum_probs=78.7
Q ss_pred hHHHHHhhccC-ChhHHHHHHHHHHHhccCCChhHHHhhhcccchHHHHHH-hcCC-CCHHHHHHHHHHHhcCCC-Chh-
Q 001833 681 IPVLVQLCEHD-NENVRANAVKLFCCLVDDGDEAIIREHVGQKCLETLVTI-IQSS-HNEEEIASAMGILSKLPE-VPQ- 755 (1008)
Q Consensus 681 i~~Lv~ll~~~-~~~v~~~a~~~L~~Ls~~~~~~~~~~~~~~~~i~~Lv~l-L~~~-~~~~v~~~a~~~L~nL~~-~~~- 755 (1008)
.+.+-.-+... ...-|.+|+..+..|++. ..+....++. +.+..+++- -.++ .+...+..|+..++.|+. ...
T Consensus 212 ~EYIrrd~e~sd~~TrR~AA~dfl~~L~~~-~~~~v~~i~~-~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~ 289 (370)
T PF08506_consen 212 EEYIRRDLEGSDSDTRRRAACDFLRSLCKK-FEKQVTSILM-QYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGSTT 289 (370)
T ss_dssp HHHHHHHSCSS---SHHHHHHHHHHHHHHH-HHHHHHHHHH-HHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--B
T ss_pred HHHHHhhccccccCCcHHHHHHHHHHHHHH-HhHHHHHHHH-HHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhccc
Confidence 33344444433 355677888999999732 1111111111 122222221 1122 456778888888888765 111
Q ss_pred -----------hHHHHHhcCCHHHHHHHhhCCCCCCCchhhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHHHhhc
Q 001833 756 -----------FTQWLLDAGALPIVLNFLKNGRQNDPNRFQVVENAVGALRRFTAPTNLEWQKRAAEAGVIPKLVQLLEY 824 (1008)
Q Consensus 756 -----------~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~v~~~a~~aL~~L~~~~~~~~~~~l~~~g~l~~Lv~lL~~ 824 (1008)
.........++|-|. .+ .+..+-++..|++.+..+-..-+++.. .+++|.++.+|.+
T Consensus 290 ~~Gvt~~~~~v~v~~Ff~~~v~peL~---~~----~~~~piLka~aik~~~~Fr~~l~~~~l-----~~~~~~l~~~L~~ 357 (370)
T PF08506_consen 290 KSGVTQTNELVDVVDFFSQHVLPELQ---PD----VNSHPILKADAIKFLYTFRNQLPKEQL-----LQIFPLLVNHLQS 357 (370)
T ss_dssp TTB-S-B-TTS-HHHHHHHHTCHHHH----S----S-S-HHHHHHHHHHHHHHGGGS-HHHH-----HHHHHHHHHHTTS
T ss_pred cCCcccccccccHHHHHHHHhHHHhc---cc----CCCCcchHHHHHHHHHHHHhhCCHHHH-----HHHHHHHHHHhCC
Confidence 122333334444443 11 114677999999999998875333322 3478999999999
Q ss_pred CChHHHHHHHHHH
Q 001833 825 GTTLTKEHAATSL 837 (1008)
Q Consensus 825 ~~~~v~~~Aa~aL 837 (1008)
++.-|...||.++
T Consensus 358 ~~~vv~tyAA~~i 370 (370)
T PF08506_consen 358 SSYVVHTYAAIAI 370 (370)
T ss_dssp S-HHHHHHHHHHH
T ss_pred CCcchhhhhhhhC
Confidence 9999999999875
No 372
>PF11791 Aconitase_B_N: Aconitate B N-terminal domain; InterPro: IPR015933 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. This entry represents the N-terminal HEAT-like domain, which is present in bacterial aconitase (AcnB), but not in AcnA or eukaryotic cAcn/IRP2 or mAcn. This domain is multi-helical, forming two curved layers in a right-handed alpha-alpha superhelix. HEAT-like domains are usually implicated in protein-protein interactions. The HEAT-like domain and the 'swivel' domain that follows it were shown to be sufficient for dimerisation and for AcnB binding to mRNA. An iron-mediated dimerisation mechanism may be responsible for switching AcnB between its catalytic and regulatory roles, as dimerisation requires iron while mRNA binding is inhibited by iron. More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0003994 aconitate hydratase activity, 0006099 tricarboxylic acid cycle; PDB: 1L5J_B.
Probab=36.27 E-value=1.2e+02 Score=29.19 Aligned_cols=28 Identities=29% Similarity=0.504 Sum_probs=21.8
Q ss_pred chHHHHHhhcCCChhhhHHHHHHHHhhh
Q 001833 888 AVRPLVRVLEDPDHGACEASLDALVTLI 915 (1008)
Q Consensus 888 ~i~~Lv~lL~~~d~~v~~~al~aL~~L~ 915 (1008)
-|.+|+++|.++|..+...|..+|.+.+
T Consensus 95 NV~~LI~~L~~~d~~lA~~Aa~aLk~Tl 122 (154)
T PF11791_consen 95 NVQPLIDLLKSDDEELAEEAAEALKNTL 122 (154)
T ss_dssp THHHHHHGG--G-TTTHHHHHHHHHT--
T ss_pred cHHHHHHHHcCCcHHHHHHHHHHHHhhH
Confidence 5899999999999999999999999987
No 373
>PF11894 DUF3414: Protein of unknown function (DUF3414); InterPro: IPR021827 This family of proteins are functionally uncharacterised. This protein is found in eukaryotes. Proteins in this family are typically between 764 to 2011 amino acids in length. This protein has a conserved LLG sequence motif.
Probab=36.19 E-value=1.4e+03 Score=31.96 Aligned_cols=61 Identities=16% Similarity=0.169 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHhhchhhhhhHhhcC---chHHHHHHHcCCCH-HHHHHHHHHHHHhccCChhhHH
Q 001833 353 LHCLEQLQDLCQQRDQHREWVILEN---YIPKLIYLLGSKNR-DVRNRALIILHILVKDSNDTKE 413 (1008)
Q Consensus 353 ~~al~~L~~l~~~~~~~r~~i~~~g---~i~~L~~lL~s~~~-~~~~~Al~~L~~Ls~~~~~~k~ 413 (1008)
..-++-+..+++.++..|..+.+.. .++.|.+++..+-+ ..+-..+.+|..++...++.+.
T Consensus 582 ~a~L~Li~~V~~~s~~ar~~l~~~~~~~~~~~L~~L~~~~vp~~Lkaai~~~Laal~~~~~~~~~ 646 (1691)
T PF11894_consen 582 SAYLRLISSVVRNSEQARSALLENPNWNPIDILFGLLSCPVPPSLKAAIFNALAALAAKSPEIAN 646 (1691)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHhCCCCchHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCHHHHH
Confidence 3445667788888888898887653 69999999998654 4666667888888433324443
No 374
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=35.29 E-value=3.2e+02 Score=27.51 Aligned_cols=112 Identities=13% Similarity=0.140 Sum_probs=66.2
Q ss_pred HHHHHhhccCChHHHHHHHHHHHHhccCCChhhHHHHhhhc-----C--------------ChHHHHHhhccC-ChhHHH
Q 001833 638 FMLFSLINLTGPNVQQRILQTFNALCRSPSAGNIKTTLTQC-----S--------------AIPVLVQLCEHD-NENVRA 697 (1008)
Q Consensus 638 ~~L~~ll~~~~~~v~~~al~aL~~L~~~~~~~~~~~~i~e~-----~--------------~i~~Lv~ll~~~-~~~v~~ 697 (1008)
..+-.++..+++.+|..|+.++..|-.+. +..-....+. . .-..|+..++.+ +..+..
T Consensus 43 sLlt~il~Dp~~kvR~aA~~~l~~lL~gs--k~~L~~Ae~~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~ 120 (182)
T PF13251_consen 43 SLLTCILKDPSPKVRAAAASALAALLEGS--KPFLAQAEESKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLT 120 (182)
T ss_pred chhHHHHcCCchhHHHHHHHHHHHHHHcc--HHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHH
Confidence 33445566788999999999999987642 1111111100 0 112345555554 677888
Q ss_pred HHHHHHHHhccCCChhHHHhhhcccchHHHHHHhcCCCCHHHHHHHHHHHhcCCC
Q 001833 698 NAVKLFCCLVDDGDEAIIREHVGQKCLETLVTIIQSSHNEEEIASAMGILSKLPE 752 (1008)
Q Consensus 698 ~a~~~L~~Ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~v~~~a~~~L~nL~~ 752 (1008)
..+++|..|....+-+....-+-...+..+..++.+ .+.+++..++.+++.+..
T Consensus 121 q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~-~d~~v~v~~l~~~~~l~s 174 (182)
T PF13251_consen 121 QLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRH-RDPNVRVAALSCLGALLS 174 (182)
T ss_pred HHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhc-CCCcHHHHHHHHHHHHHc
Confidence 899999999855443333221222334444455666 455788888888887755
No 375
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=34.97 E-value=1.2e+02 Score=26.25 Aligned_cols=66 Identities=12% Similarity=0.265 Sum_probs=47.4
Q ss_pred hhccchHHHHHhhc-CCChhhhHHHHHHHHhhhcccccchhhHHHHhcCchHHHHHHh----cCCChHHHHHHHHHHH
Q 001833 884 LEANAVRPLVRVLE-DPDHGACEASLDALVTLIEGERLQNGSKVLEDANAIDRMVRFL----SSPSPKLQEKALDSVE 956 (1008)
Q Consensus 884 ~~~g~i~~Lv~lL~-~~d~~v~~~al~aL~~L~~~~~~~~~~~~i~~~~~i~~l~~ll----~~~~~~l~~~a~~~L~ 956 (1008)
.+...+.|+..++. ..+.++++..+.++..++.. ...-.. .|++.+..++ .++++.+...|..+++
T Consensus 14 fQ~~fL~Pf~~i~~~~~~~~vre~il~ci~qil~~------~~~~i~-SGW~~if~il~~aa~~~~e~lv~~af~~~~ 84 (86)
T PF09324_consen 14 FQKDFLKPFEYIMSNNPSIDVRELILECILQILQS------RGENIK-SGWKVIFSILRAAAKDNDESLVRLAFQIVQ 84 (86)
T ss_pred HHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHH------hHHHHH-hccHHHHHHHHHHHhCCCccHHHHHHHHHh
Confidence 45678999999875 56889999999999999921 112223 3577777776 3457778888877764
No 376
>PRK09169 hypothetical protein; Validated
Probab=34.49 E-value=1.6e+03 Score=31.94 Aligned_cols=56 Identities=14% Similarity=-0.036 Sum_probs=25.3
Q ss_pred chHHHHHHHHHHHHHHhhchhhhhhHhhcCchHHHHHHHcCCCHHHHHHHHHHHHH
Q 001833 348 EVEEVLHCLEQLQDLCQQRDQHREWVILENYIPKLIYLLGSKNRDVRNRALIILHI 403 (1008)
Q Consensus 348 ~~~~~~~al~~L~~l~~~~~~~r~~i~~~g~i~~L~~lL~s~~~~~~~~Al~~L~~ 403 (1008)
+......+...|.......+..+..|...++...|-.+-+..+....+.+...|..
T Consensus 177 ~~~~c~~aa~~lA~~la~~~~l~~al~~q~va~~lnalSKwp~~~~cr~a~~~lA~ 232 (2316)
T PRK09169 177 DNTDCQTAAEQLADRLASDSRLLQAMDAQEVANALNALSKWPDSPRCRNAAERLAE 232 (2316)
T ss_pred CchHHHHHHHHHHHHhccCHHHHHhcchHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Confidence 34445555556655544444444444433333323233333444555555544443
No 377
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=34.42 E-value=14 Score=47.03 Aligned_cols=43 Identities=21% Similarity=0.391 Sum_probs=37.1
Q ss_pred ccccccccccccC-CceeccCcccccHHHHHHHHhcCCCCCCCcC
Q 001833 264 QSFYCPITRDVMV-DPVETSSGQTFERSAIEKWFSDGNNLCPLTM 307 (1008)
Q Consensus 264 ~~~~cpi~~~~m~-dpv~~~~g~t~~r~~i~~w~~~~~~~cp~~~ 307 (1008)
.+|.|+||+++|+ ---+.-|||.||-.|+.-|+.. +..||.+.
T Consensus 1152 ~~~~c~ic~dil~~~~~I~~cgh~~c~~c~~~~l~~-~s~~~~~k 1195 (1394)
T KOG0298|consen 1152 GHFVCEICLDILRNQGGIAGCGHEPCCRCDELWLYA-SSRCPICK 1195 (1394)
T ss_pred cccchHHHHHHHHhcCCeeeechhHhhhHHHHHHHH-hccCcchh
Confidence 5679999999999 6677789999999999999976 45688885
No 378
>KOG1848 consensus Uncharacterized conserved protein [Function unknown]
Probab=33.79 E-value=7.1e+02 Score=32.94 Aligned_cols=110 Identities=14% Similarity=0.158 Sum_probs=53.2
Q ss_pred CChHHHHHHhcccCCCCcchHHHHHHHHHHHhccccccccCCcccccccchhHHHHHHHhhcc----C---ChHHHHHHH
Q 001833 584 GAVGPLVDLLLHHSSSSSSLREETATAIMHLAVSTMYQESSQTPVTLLESDKEIFMLFSLINL----T---GPNVQQRIL 656 (1008)
Q Consensus 584 G~v~~Ll~ll~~~~~~~~~~~~~a~~~L~nLa~~~~~~~~~~~~~~~l~~~~~i~~L~~ll~~----~---~~~v~~~al 656 (1008)
|.+-+.+.+....... .+++.....+|.++-...... ++. + .+.++.++++ . ...+....-
T Consensus 840 ~~~l~sl~v~~~s~~~-~evr~~sl~~l~silet~ge~--------ll~--~-w~sV~eml~s~~d~~~ekek~ivrlgf 907 (1610)
T KOG1848|consen 840 GMLLPSLEVSDNSSRG-VEVRISSLEALVSILETVGEH--------LLH--G-WQSVFEMLRSATDFGSEKEKKIVRLGF 907 (1610)
T ss_pred HHHHHHHHHHHhcCcc-ceeeHHHHHHHHHHHhccchh--------hcc--c-cHHHHHHHHHHhhccchhhhhHHHhhh
Confidence 4444444444332322 566777778888877643321 222 1 4555555541 1 122333333
Q ss_pred HHHHHhccCCChhhHHHHhhhcCChHHHHHhhccC-ChhHHHHHHHHHHHhc
Q 001833 657 QTFNALCRSPSAGNIKTTLTQCSAIPVLVQLCEHD-NENVRANAVKLFCCLV 707 (1008)
Q Consensus 657 ~aL~~L~~~~~~~~~~~~i~e~~~i~~Lv~ll~~~-~~~v~~~a~~~L~~Ls 707 (1008)
.+|.-++.+ .-..-+.=.-.+.+..+..+.+.. |..+-..|+..+++++
T Consensus 908 ~~lrlIssD--fLqSLp~sci~~lidtl~~fs~QktdlNISltAi~lfWtvs 957 (1610)
T KOG1848|consen 908 SCLRLISSD--FLQSLPTSCILDLIDTLLVFSRQKTDLNISLTAIGLFWTVS 957 (1610)
T ss_pred hhhhhhhhc--chhcCChHHHHHHHHHHHHHHhhhccccccHHHHHHHHHHH
Confidence 344444432 000000000123456666666554 6778888888888886
No 379
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=33.66 E-value=2e+02 Score=31.25 Aligned_cols=142 Identities=13% Similarity=0.129 Sum_probs=88.1
Q ss_pred hHHHHHhhccCChhHHHHHHHHHHHhccCCChhHHHhhhcccchHHHHHHhcCCCCHHHHHHHHHHHhcCCC--ChhhHH
Q 001833 681 IPVLVQLCEHDNENVRANAVKLFCCLVDDGDEAIIREHVGQKCLETLVTIIQSSHNEEEIASAMGILSKLPE--VPQFTQ 758 (1008)
Q Consensus 681 i~~Lv~ll~~~~~~v~~~a~~~L~~Ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~v~~~a~~~L~nL~~--~~~~~~ 758 (1008)
+...+..|.+.+-+....++..+..|+..+. +.....+ ...+-.+++-+++. ...+-..|+.+++.+.. +....+
T Consensus 90 l~~~l~~L~s~dW~~~vdgLn~irrLs~fh~-e~l~~~L-~~vii~vvkslKNl-RS~VsraA~~t~~difs~ln~~i~~ 166 (334)
T KOG2933|consen 90 LKQALKKLSSDDWEDKVDGLNSIRRLSEFHP-ESLNPML-HEVIIAVVKSLKNL-RSAVSRAACMTLADIFSSLNNSIDQ 166 (334)
T ss_pred HHHHHHHhchHHHHHHhhhHHHHHHHHhhhH-HHHHHHH-HHHHHHHHHHhcCh-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666777777788888888888874443 2222221 13566666667664 33566677777777765 332222
Q ss_pred HHHhcCCHHHHHHHhhCCCCCCCchhhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHHHhhcCChHHHHHHHHHHh
Q 001833 759 WLLDAGALPIVLNFLKNGRQNDPNRFQVVENAVGALRRFTAPTNLEWQKRAAEAGVIPKLVQLLEYGTTLTKEHAATSLA 838 (1008)
Q Consensus 759 ~l~~~g~l~~Lv~lL~~~~~~~~~~~~v~~~a~~aL~~L~~~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~v~~~Aa~aL~ 838 (1008)
.+..++..|-..... .+.-+++.|-.+|..++.+..|. -+++.|...+.+.++.++..++.+..
T Consensus 167 ------~ld~lv~~Ll~ka~~--dnrFvreda~kAL~aMV~~vtp~--------~~L~~L~~~~~~~n~r~r~~a~~~~~ 230 (334)
T KOG2933|consen 167 ------ELDDLVTQLLHKASQ--DNRFVREDAEKALVAMVNHVTPQ--------KLLRKLIPILQHSNPRVRAKAALCFS 230 (334)
T ss_pred ------HHHHHHHHHHhhhcc--cchHHHHHHHHHHHHHHhccChH--------HHHHHHHHHHhhhchhhhhhhhcccc
Confidence 233333333331111 35678999999999999853332 24567777788889999988887666
Q ss_pred hhh
Q 001833 839 RFS 841 (1008)
Q Consensus 839 nLs 841 (1008)
+..
T Consensus 231 ~~v 233 (334)
T KOG2933|consen 231 RCV 233 (334)
T ss_pred ccc
Confidence 554
No 380
>PF09723 Zn-ribbon_8: Zinc ribbon domain; InterPro: IPR013429 This entry represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB []. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=33.55 E-value=9.7 Score=27.92 Aligned_cols=33 Identities=24% Similarity=0.470 Sum_probs=20.0
Q ss_pred CCccccccccccccCCceeccCcccccHHHHHHHHhcCCCCCCCcCc
Q 001833 262 PLQSFYCPITRDVMVDPVETSSGQTFERSAIEKWFSDGNNLCPLTMT 308 (1008)
Q Consensus 262 ~~~~~~cpi~~~~m~dpv~~~~g~t~~r~~i~~w~~~~~~~cp~~~~ 308 (1008)
|..+|.|+ .||++|+... .--+.....||.|+.
T Consensus 2 P~Yey~C~------------~Cg~~fe~~~--~~~~~~~~~CP~Cg~ 34 (42)
T PF09723_consen 2 PIYEYRCE------------ECGHEFEVLQ--SISEDDPVPCPECGS 34 (42)
T ss_pred CCEEEEeC------------CCCCEEEEEE--EcCCCCCCcCCCCCC
Confidence 45788888 5677776521 100123567999987
No 381
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=33.04 E-value=29 Score=43.96 Aligned_cols=46 Identities=26% Similarity=0.294 Sum_probs=36.8
Q ss_pred ccccccccc-----cCCceecc--CcccccHHHHHHHHhcCCCCCCCcCccCC
Q 001833 266 FYCPITRDV-----MVDPVETS--SGQTFERSAIEKWFSDGNNLCPLTMTVLD 311 (1008)
Q Consensus 266 ~~cpi~~~~-----m~dpv~~~--~g~t~~r~~i~~w~~~~~~~cp~~~~~l~ 311 (1008)
=+|.||++- +-+|-+.| ||.-.||.|-+---.+|+..||+|+.+..
T Consensus 18 qiCqICGD~vg~~~~Ge~FVAC~eC~FPVCrpCYEYEr~eG~q~CPqCktrYk 70 (1079)
T PLN02638 18 QVCQICGDNVGKTVDGEPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTKYK 70 (1079)
T ss_pred ceeeecccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchh
Confidence 379888874 55787764 88889999997777789999999976654
No 382
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=32.32 E-value=28 Score=27.05 Aligned_cols=45 Identities=16% Similarity=0.146 Sum_probs=31.5
Q ss_pred cccccccccCCceeccCcccccHHHHHHHHhcCCCCCCCcCccCCCCC
Q 001833 267 YCPITRDVMVDPVETSSGQTFERSAIEKWFSDGNNLCPLTMTVLDTSI 314 (1008)
Q Consensus 267 ~cpi~~~~m~dpv~~~~g~t~~r~~i~~w~~~~~~~cp~~~~~l~~~~ 314 (1008)
.|=.+...=...++++|||-.++.+-.- +.-.-||.|+.++...+
T Consensus 9 ~~~~~~~~~~~~~~~pCgH~I~~~~f~~---~rYngCPfC~~~~~~~~ 53 (55)
T PF14447_consen 9 PCVFCGFVGTKGTVLPCGHLICDNCFPG---ERYNGCPFCGTPFEFDD 53 (55)
T ss_pred eEEEccccccccccccccceeeccccCh---hhccCCCCCCCcccCCC
Confidence 3444555556788899999999976333 33456999999887543
No 383
>COG4530 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=32.23 E-value=30 Score=30.64 Aligned_cols=29 Identities=28% Similarity=0.409 Sum_probs=20.0
Q ss_pred ccccccccc----cCCceecc-CcccccHHHHHH
Q 001833 266 FYCPITRDV----MVDPVETS-SGQTFERSAIEK 294 (1008)
Q Consensus 266 ~~cpi~~~~----m~dpv~~~-~g~t~~r~~i~~ 294 (1008)
-+||=|+.= =+||++.+ ||.+|-|+..++
T Consensus 10 ridPetg~KFYDLNrdPiVsPytG~s~P~s~fe~ 43 (129)
T COG4530 10 RIDPETGKKFYDLNRDPIVSPYTGKSYPRSYFEE 43 (129)
T ss_pred ccCccccchhhccCCCccccCcccccchHHHHHh
Confidence 366666554 45788876 888888876554
No 384
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=32.12 E-value=82 Score=31.83 Aligned_cols=66 Identities=14% Similarity=0.325 Sum_probs=52.1
Q ss_pred chHHHHHhhcCCChhhhHHHHHHHHhhh-cccccchhhHHHHhcCchHHHHHHhcCCChHHHHHHHHHHHHHhcC
Q 001833 888 AVRPLVRVLEDPDHGACEASLDALVTLI-EGERLQNGSKVLEDANAIDRMVRFLSSPSPKLQEKALDSVERIFRL 961 (1008)
Q Consensus 888 ~i~~Lv~lL~~~d~~v~~~al~aL~~L~-~~~~~~~~~~~i~~~~~i~~l~~ll~~~~~~l~~~a~~~L~~l~~~ 961 (1008)
.++.++++..+++..++..|+..+.-++ .|-. . -...++.|+.+..++++.++..|..++..++..
T Consensus 9 yl~~Il~~~~~~~~~vr~~Al~~l~~il~qGLv-n-------P~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK 75 (187)
T PF12830_consen 9 YLKNILELCLSSDDSVRLAALQVLELILRQGLV-N-------PKQCVPTLIALETSPNPSIRSRAYQLLKELHEK 75 (187)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCC-C-------hHHHHhHhhhhhCCCChHHHHHHHHHHHHHHHH
Confidence 3677788888899999999999998888 4421 1 122478899999999999999999999887543
No 385
>KOG1848 consensus Uncharacterized conserved protein [Function unknown]
Probab=31.85 E-value=9e+02 Score=32.11 Aligned_cols=114 Identities=10% Similarity=0.127 Sum_probs=53.7
Q ss_pred ccchhHHHHHHHhhcc--CChHHHHHHHHHHHHhccCCChhhHHHHhhhcCChHHHHHhhcc----C---ChhHHHHHHH
Q 001833 631 LESDKEIFMLFSLINL--TGPNVQQRILQTFNALCRSPSAGNIKTTLTQCSAIPVLVQLCEH----D---NENVRANAVK 701 (1008)
Q Consensus 631 l~~~~~i~~L~~ll~~--~~~~v~~~al~aL~~L~~~~~~~~~~~~i~e~~~i~~Lv~ll~~----~---~~~v~~~a~~ 701 (1008)
.++.+.+.+...+... ..-+++...+.++.++...... .+.. | .+.+.+++++ + ...+.+-+-.
T Consensus 836 ~es~~~~l~sl~v~~~s~~~~evr~~sl~~l~silet~ge-----~ll~-~-w~sV~eml~s~~d~~~ekek~ivrlgf~ 908 (1610)
T KOG1848|consen 836 FESLGMLLPSLEVSDNSSRGVEVRISSLEALVSILETVGE-----HLLH-G-WQSVFEMLRSATDFGSEKEKKIVRLGFS 908 (1610)
T ss_pred HhhhHHHHHHHHHHHhcCccceeeHHHHHHHHHHHhccch-----hhcc-c-cHHHHHHHHHHhhccchhhhhHHHhhhh
Confidence 3455555555555443 3456777777888887654221 1111 2 5555555542 1 2233444444
Q ss_pred HHHHhccCCChhHHHhhhcccchHHHHHHhcCCCCHHHHHHHHHHHhcCCC
Q 001833 702 LFCCLVDDGDEAIIREHVGQKCLETLVTIIQSSHNEEEIASAMGILSKLPE 752 (1008)
Q Consensus 702 ~L~~Ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~v~~~a~~~L~nL~~ 752 (1008)
+|.-++.+.-. .+..-.-.+.++.++.......+..+--.|.+.+++++.
T Consensus 909 ~lrlIssDfLq-SLp~sci~~lidtl~~fs~QktdlNISltAi~lfWtvsD 958 (1610)
T KOG1848|consen 909 CLRLISSDFLQ-SLPTSCILDLIDTLLVFSRQKTDLNISLTAIGLFWTVSD 958 (1610)
T ss_pred hhhhhhhcchh-cCChHHHHHHHHHHHHHHhhhccccccHHHHHHHHHHHH
Confidence 55555422110 000000113445555544444454555667777776654
No 386
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=31.76 E-value=9.9e+02 Score=28.85 Aligned_cols=77 Identities=18% Similarity=0.276 Sum_probs=51.1
Q ss_pred hhhHHHHHHHHHhHHHHHHHHhcCCCCCcHhHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHhhhH------HHHHHHHH
Q 001833 40 KESFKELAAYLERIVPVLKELNKRDLSHSEGLNSAIEILNREIKGAKELTTECSKRNKVYLLMNCR------AIVKRLKD 113 (1008)
Q Consensus 40 ~~~~~~l~r~~~ll~~lleel~~~~~~~~~~~~~~l~~L~~~l~~a~~Ll~~c~~~Skl~l~~~~~------~~~~~~~~ 113 (1008)
++...+..+++..+.--++||...+.. |.=...|+.-+..|..+..+.+.+... +.++..+ .+...+..
T Consensus 181 ~~~~~~~~~eld~L~~ql~ELe~~~l~--~~E~e~L~~e~~~L~n~e~i~~~~~~~---~~~L~~~~~~~~~~~~~~l~~ 255 (563)
T TIGR00634 181 QQKEQELAQRLDFLQFQLEELEEADLQ--PGEDEALEAEQQRLSNLEKLRELSQNA---LAALRGDVDVQEGSLLEGLGE 255 (563)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHhCCcC--CCcHHHHHHHHHHHhCHHHHHHHHHHH---HHHHhCCccccccCHHHHHHH
Confidence 445567888999999999999987753 233566777777777777777777655 2222332 45666666
Q ss_pred HHHHHHHH
Q 001833 114 TAREISQA 121 (1008)
Q Consensus 114 ~~~~~~~~ 121 (1008)
+.+.+...
T Consensus 256 ~~~~l~~~ 263 (563)
T TIGR00634 256 AQLALASV 263 (563)
T ss_pred HHHHHHHh
Confidence 66555554
No 387
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=31.30 E-value=47 Score=25.16 Aligned_cols=43 Identities=16% Similarity=0.269 Sum_probs=19.1
Q ss_pred ccccccccC--Ccee--ccCcccccHHHHHHHHhcCCCCCCCcCccC
Q 001833 268 CPITRDVMV--DPVE--TSSGQTFERSAIEKWFSDGNNLCPLTMTVL 310 (1008)
Q Consensus 268 cpi~~~~m~--dpv~--~~~g~t~~r~~i~~w~~~~~~~cp~~~~~l 310 (1008)
||++-+.|. |--. -.+|+-++|.+-.+-...++..||-++++.
T Consensus 1 cp~C~e~~d~~d~~~~PC~Cgf~IC~~C~~~i~~~~~g~CPgCr~~Y 47 (48)
T PF14570_consen 1 CPLCDEELDETDKDFYPCECGFQICRFCYHDILENEGGRCPGCREPY 47 (48)
T ss_dssp -TTTS-B--CCCTT--SSTTS----HHHHHHHTTSS-SB-TTT--B-
T ss_pred CCCcccccccCCCccccCcCCCcHHHHHHHHHHhccCCCCCCCCCCC
Confidence 566666661 2111 368999999886666555677899998764
No 388
>PLN02436 cellulose synthase A
Probab=30.92 E-value=36 Score=43.07 Aligned_cols=47 Identities=23% Similarity=0.275 Sum_probs=37.7
Q ss_pred cccccccccc-----cCCceecc--CcccccHHHHHHHHhcCCCCCCCcCccCC
Q 001833 265 SFYCPITRDV-----MVDPVETS--SGQTFERSAIEKWFSDGNNLCPLTMTVLD 311 (1008)
Q Consensus 265 ~~~cpi~~~~-----m~dpv~~~--~g~t~~r~~i~~w~~~~~~~cp~~~~~l~ 311 (1008)
.=+|.||++- +-+|-+.| ||.-.||.|-+.-.++|+..||.|+.+..
T Consensus 36 ~~iCqICGD~Vg~t~dGe~FVACn~C~fpvCr~Cyeyer~eg~~~Cpqckt~Y~ 89 (1094)
T PLN02436 36 GQTCQICGDEIELTVDGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYK 89 (1094)
T ss_pred CccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchh
Confidence 3489999864 45787765 78889999997777789999999987765
No 389
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=30.88 E-value=5.3e+02 Score=29.24 Aligned_cols=138 Identities=14% Similarity=0.106 Sum_probs=72.4
Q ss_pred HHHHHHHHHHHHHhhCCCchhHHHHhc---CChHHHHHHhcccCCCCcchHHHHHHHHHHHhcccccccc-CCccccccc
Q 001833 557 IQMKKVAVKALRNLSSVPQNGLQMIKE---GAVGPLVDLLLHHSSSSSSLREETATAIMHLAVSTMYQES-SQTPVTLLE 632 (1008)
Q Consensus 557 ~~~~~~A~~aL~~L~~~~~~~~~i~~~---G~v~~Ll~ll~~~~~~~~~~~~~a~~~L~nLa~~~~~~~~-~~~~~~~l~ 632 (1008)
..-+..|...|..|+.. +..-+.. +.+..++.-....+......++.|...+..|+........ ....-..+.
T Consensus 225 ~TrR~AA~dfl~~L~~~---~~~~v~~i~~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~ 301 (370)
T PF08506_consen 225 DTRRRAACDFLRSLCKK---FEKQVTSILMQYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGSTTKSGVTQTNELVD 301 (370)
T ss_dssp -SHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-
T ss_pred CCcHHHHHHHHHHHHHH---HhHHHHHHHHHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhccccCCccccccccc
Confidence 45677889999999852 2222211 1222222222222222356788999999999986543221 110001111
Q ss_pred chhHHH-HHHHhhc---cCChHHHHHHHHHHHHhccCCChhhHHHHhhhcCChHHHHHhhccCChhHHHHHHHHH
Q 001833 633 SDKEIF-MLFSLIN---LTGPNVQQRILQTFNALCRSPSAGNIKTTLTQCSAIPVLVQLCEHDNENVRANAVKLF 703 (1008)
Q Consensus 633 ~~~~i~-~L~~ll~---~~~~~v~~~al~aL~~L~~~~~~~~~~~~i~e~~~i~~Lv~ll~~~~~~v~~~a~~~L 703 (1008)
-.+.+. .++.-|. +..|-++..|++.+...-..-. .+.+. +.+|.++.+|.+++.-++..|+.++
T Consensus 302 v~~Ff~~~v~peL~~~~~~~piLka~aik~~~~Fr~~l~----~~~l~--~~~~~l~~~L~~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 302 VVDFFSQHVLPELQPDVNSHPILKADAIKFLYTFRNQLP----KEQLL--QIFPLLVNHLQSSSYVVHTYAAIAI 370 (370)
T ss_dssp HHHHHHHHTCHHHH-SS-S-HHHHHHHHHHHHHHGGGS-----HHHHH--HHHHHHHHHTTSS-HHHHHHHHHHH
T ss_pred HHHHHHHHhHHHhcccCCCCcchHHHHHHHHHHHHhhCC----HHHHH--HHHHHHHHHhCCCCcchhhhhhhhC
Confidence 111111 1112222 4567788889988888765311 12222 3689999999999999999888764
No 390
>PF04499 SAPS: SIT4 phosphatase-associated protein; InterPro: IPR007587 The SAPS family consists of proteins that associate with the SIT4 phosphatase protein []. This association is required for SIT4's role in G1 cyclin transcription and for bud formation in yeast.
Probab=30.73 E-value=2.6e+02 Score=32.85 Aligned_cols=125 Identities=16% Similarity=0.181 Sum_probs=74.5
Q ss_pred hcCCHHHHHHHhhCCCCCCCchhhHHHHHHHHHHHhcCC--CCHHHHHHHHHcCChHHHHHHhhc-CChHHHHHHHHHHh
Q 001833 762 DAGALPIVLNFLKNGRQNDPNRFQVVENAVGALRRFTAP--TNLEWQKRAAEAGVIPKLVQLLEY-GTTLTKEHAATSLA 838 (1008)
Q Consensus 762 ~~g~l~~Lv~lL~~~~~~~~~~~~v~~~a~~aL~~L~~~--~~~~~~~~l~~~g~l~~Lv~lL~~-~~~~v~~~Aa~aL~ 838 (1008)
..+++..+++.+.. +.+.+-.+..+. +.. ......+-+.+.++++.|+.+|.. .++.++..|+..|+
T Consensus 19 ~~~~v~~llkHI~~--------~~ImDlLLklIs--~d~~~~~~~ilewL~~q~LI~~Li~~L~p~~~~~~q~naa~~L~ 88 (475)
T PF04499_consen 19 QPNFVDNLLKHIDT--------PAIMDLLLKLIS--TDKPESPTGILEWLAEQNLIPRLIDLLSPSYSSDVQSNAADFLK 88 (475)
T ss_pred CccHHHHHHHhcCC--------cHHHHHHHHHHc--cCcccchHHHHHHHHHhCHHHHHHHHhCCCCCHHHHHHHHHHHH
Confidence 35567777777765 233333333333 110 133566667789999999999973 46799999999998
Q ss_pred hhhhcCCCCCCCCCCCCcccccCCCCCCcccccCcccCcccchhHhhccchHHHHH-hhcCCChhhhHHHHHHHHhhh
Q 001833 839 RFSKNSLGLSRPIPKRKGFWCFSPPPEIGCQVHGGLCGIESSFCLLEANAVRPLVR-VLEDPDHGACEASLDALVTLI 915 (1008)
Q Consensus 839 nLs~~~~~l~~~~~~~~g~~~~~~~~~~~c~vh~~~c~~~~~~~l~~~g~i~~Lv~-lL~~~d~~v~~~al~aL~~L~ 915 (1008)
.+..-+.+-.... +.++....-...|.....|..|++ +|.+........++..+..|+
T Consensus 89 aII~is~n~~~~~-------------------~~~igpn~L~r~L~S~~~v~~Ll~~mL~~~~~s~lvn~v~IlieLI 147 (475)
T PF04499_consen 89 AIIRISRNAPQNE-------------------QSSIGPNPLTRQLVSEETVEKLLDIMLNSQGGSSLVNGVSILIELI 147 (475)
T ss_pred HHHHHhhcccccc-------------------ccCCCccHHHHHHhChHHHHHHHHHHhcCCCcchHHHHHHHHHHHH
Confidence 8875443211100 001111223444666777888876 443233556667777787777
No 391
>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []. The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.
Probab=30.58 E-value=1.2e+03 Score=29.31 Aligned_cols=472 Identities=12% Similarity=0.108 Sum_probs=0.0
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHhhcCCcccHHHHHhcCcHHHHHHHHhcC-----CHHHHHHHHHHHHHHcCChhhHH
Q 001833 463 ILLLVTMASSDDNQASRDAQELLENLSFSDDNVVQMAKANYFKHLLQRLSAG-----PESVKMRMATTLAEMELTDHHKA 537 (1008)
Q Consensus 463 i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~~~n~~~i~~~g~v~~Lv~~L~~~-----~~~~~~~aa~~L~~Ls~~~~~k~ 537 (1008)
|..+.+.+..-+.......+.-........+....- .-.+-.+.+.|..+ ++.++..--.++..+.....-+.
T Consensus 40 V~~f~~~l~~wd~~rI~~~L~~~~~~~~~~~~~~~~--~~~~~aiyE~L~~p~lLr~~~~l~~~F~~~f~~~~~~~~~~~ 117 (727)
T PF12726_consen 40 VDQFFNMLDNWDIQRILPGLDKAKSILESIEPMTRS--RALLLAIYECLCNPALLRDDEELRELFDAIFSSLQSKKPLKL 117 (727)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcc--chHHHHHHHHHhCHHHHcCcHHHHHHHHHHHHHHhccCCccc
Q ss_pred HHhhcCcHHHHHHHhccCCHHHHHHHHHHHHHhhC-----CCchhHHHHhcCChHHHHHHhcccCCCCcchHHHHHHHHH
Q 001833 538 SLLEGNVLGPLLHLVSRGDIQMKKVAVKALRNLSS-----VPQNGLQMIKEGAVGPLVDLLLHHSSSSSSLREETATAIM 612 (1008)
Q Consensus 538 ~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~-----~~~~~~~i~~~G~v~~Ll~ll~~~~~~~~~~~~~a~~~L~ 612 (1008)
. .+.+|.++.+|-++++..++-|...+.++-. ..++=+..+..+....+..+ +.+......+.. .|.-.
T Consensus 118 ~---~~~lPG~~~~Lf~~~~~~r~WA~~~~~~l~~~~~~~t~~~~~~av~~~l~~~l~~i-~~~~~~~~~~~~--fW~g~ 191 (727)
T PF12726_consen 118 P---KELLPGMTYFLFDGNPERRRWAERWWQRLKRPPYSITDEEFDWAVLDELSSHLYRI-SPNNYNPDSVIR--FWSGF 191 (727)
T ss_pred c---ccccchhhhhhhcCCHHHHHHHHHHHHHcCCCccCCchhhhhHHHHHHHHHHHHHh-ccCCCChhHHHH--HHHHH
Q ss_pred HHhccccccccCCcccccccchhHHHHHHHhhccCChHHHHHHHHHHHHhcc-----------CCChhhHHHHhhhcCCh
Q 001833 613 HLAVSTMYQESSQTPVTLLESDKEIFMLFSLINLTGPNVQQRILQTFNALCR-----------SPSAGNIKTTLTQCSAI 681 (1008)
Q Consensus 613 nLa~~~~~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~aL~~L~~-----------~~~~~~~~~~i~e~~~i 681 (1008)
.+.-.....+........+.-...+..++..|...........+++|..+.. .-.+..+-+.+..+...
T Consensus 192 ~~Il~~ld~~~i~~~l~~~~~~~i~~L~~~hL~~~~~~~l~~lL~~l~~lL~k~~~~FW~~~~~~~p~~ild~If~np~f 271 (727)
T PF12726_consen 192 SLILRLLDKEQITHSLRALELDPIYRLLLNHLSSNLSPPLPILLRCLSILLEKLGSDFWDAMGPISPQVILDQIFDNPAF 271 (727)
T ss_pred HHHHHHccHHHHHHHHhccccchHHHHHHHHhhcccchhHHHHHHHHHHHHHhCHHHHhcccCCCCHHHHHHHHhCChHH
Q ss_pred HHHHHhhccCChhHHHHHHHHHHHhccCCChhHHHhhhcccchHHHHHHhcCCCCHHHHHHHHHHHhcCCC---ChhhHH
Q 001833 682 PVLVQLCEHDNENVRANAVKLFCCLVDDGDEAIIREHVGQKCLETLVTIIQSSHNEEEIASAMGILSKLPE---VPQFTQ 758 (1008)
Q Consensus 682 ~~Lv~ll~~~~~~v~~~a~~~L~~Ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~v~~~a~~~L~nL~~---~~~~~~ 758 (1008)
..++.-...++....... +..+. ..+..+++-|......+.....+..|..-.. .+...+
T Consensus 272 ~~~L~~~~~~~~~~~~~~---~~~~~--------------sWi~pf~~SL~~~~~~~~~~~l~~~Ll~~~q~~~~~~~~r 334 (727)
T PF12726_consen 272 KKLLLQSQEDEISESDDD---LPDLL--------------SWISPFLRSLSPSQRSQACRKLLHFLLERLQHDRFPDEAR 334 (727)
T ss_pred HHHHHhhccCCccccchh---hHHHH--------------HHHHHHHHHhcccchhhHHHHHHHHHHHHHhccccchhHH
Q ss_pred HHHhcCCHHHHHHHhhCCCCCCCchhhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHHHhhcCChHHHHHHHHHHh
Q 001833 759 WLLDAGALPIVLNFLKNGRQNDPNRFQVVENAVGALRRFTAPTNLEWQKRAAEAGVIPKLVQLLEYGTTLTKEHAATSLA 838 (1008)
Q Consensus 759 ~l~~~g~l~~Lv~lL~~~~~~~~~~~~v~~~a~~aL~~L~~~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~v~~~Aa~aL~ 838 (1008)
..+-..++..|...+..-.+....+..+..-......++.. +.. +.+.-.-+............+...|...+.
T Consensus 335 ~~c~~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~----~~~~~~~~~~~~~~~~~~~~~~~~a~~vi~ 408 (727)
T PF12726_consen 335 AACLRAGLDALLSTLRSFNDNERSDFSTALITINDTRNLVS--NYI----IRDAIIPAAKFKIEGWSNSSVSNSAMKVIR 408 (727)
T ss_pred HHHHHHHHHHHHHHHHhcccccccccchhHhhHHHHHHHHH--hhh----hhhhccChhhccccchhhHHHHHHHHHHHH
Q ss_pred hhhhcCCCCCCCCCCCCcccccCCCCCCcccccCcccCcccchhHhhcc-------------chHHHHHhhcCCChhhhH
Q 001833 839 RFSKNSLGLSRPIPKRKGFWCFSPPPEIGCQVHGGLCGIESSFCLLEAN-------------AVRPLVRVLEDPDHGACE 905 (1008)
Q Consensus 839 nLs~~~~~l~~~~~~~~g~~~~~~~~~~~c~vh~~~c~~~~~~~l~~~g-------------~i~~Lv~lL~~~d~~v~~ 905 (1008)
+.....-. ......+.+-.| ..+.+...+.+++.....
T Consensus 409 ~~l~~D~~-----------------------------~l~~~~~~l~~~~~~~~~~~~~~~~lW~~l~~~~~~~~~~la~ 459 (727)
T PF12726_consen 409 NALALDIL-----------------------------SLCEESQALLRGKPLQPAVSRISPNLWKALLKSLDSDNPDLAK 459 (727)
T ss_pred HHHHHHHH-----------------------------HHHHHHHHHhcCCCcCCcchhhhHHHHHHHHHhhcCCChHHHH
Q ss_pred HHHHHHHhhhcccccchhhHHHHhcCchHHHHHHhcCCChHHHHHHHHHHHHH--hcChHHHHHhcccc-Cchhhhhccc
Q 001833 906 ASLDALVTLIEGERLQNGSKVLEDANAIDRMVRFLSSPSPKLQEKALDSVERI--FRLPEFKQKYGKSA-QMPLVDLTQR 982 (1008)
Q Consensus 906 ~al~aL~~L~~~~~~~~~~~~i~~~~~i~~l~~ll~~~~~~l~~~a~~~L~~l--~~~~~~~~~~~~~~-~~~Lv~l~~~ 982 (1008)
..+.++.++..-+.+.... ..+...+-..-.+..-..+......+|+++ +..+++.+-+.... ..+++.++-+
T Consensus 460 ~lL~~~~~l~~l~~~~~~~----~~~~~~~~~~~~N~~~~~~~~~~~~il~rls~~~~~~L~~l~~d~~~~~~i~s~lfs 535 (727)
T PF12726_consen 460 ALLKSLSPLIGLEKFPPKK----EKDELDPAKTQFNKSLGQITDLISQILERLSDFDPSHLKELLSDPDAAQAIWSLLFS 535 (727)
T ss_pred HHHHHHHHhccccccCCcc----cccCcchHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHcCcchhhHHHhheeC
Q ss_pred CCchhhHHHHHHHHHH
Q 001833 983 GNSSMKSLSARVLAHL 998 (1008)
Q Consensus 983 ~~~~~~~~Aa~~L~~L 998 (1008)
++.++++.|..+|+..
T Consensus 536 p~~~l~qaA~~llk~~ 551 (727)
T PF12726_consen 536 PDDDLYQAAQDLLKQA 551 (727)
T ss_pred CChHHHHHHHHHHHHH
No 392
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=30.49 E-value=6.5e+02 Score=29.01 Aligned_cols=232 Identities=16% Similarity=0.173 Sum_probs=108.1
Q ss_pred HHhhhcccchHHHHHHhcCCCCHHHHHHHHHHHhcCCC-ChhhHHHHHhcCCHHHHHHHhhCCCCCCCchhhHHHHHHHH
Q 001833 715 IREHVGQKCLETLVTIIQSSHNEEEIASAMGILSKLPE-VPQFTQWLLDAGALPIVLNFLKNGRQNDPNRFQVVENAVGA 793 (1008)
Q Consensus 715 ~~~~~~~~~i~~Lv~lL~~~~~~~v~~~a~~~L~nL~~-~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~v~~~a~~a 793 (1008)
....+....+..|+.++.+ .++..+.....+|.++-. ....+ ..+.......+.+.+.... ...-...++..
T Consensus 126 ~~~~i~~~fi~~Ll~l~~S-~D~rER~~lk~~l~~iy~k~~~~r-~~Ir~~i~~~~~~fi~e~~-----~~~gI~elLei 198 (409)
T PF01603_consen 126 AKKYIDQKFIKKLLELFDS-PDPRERDYLKTILHRIYGKFPNLR-SFIRKSINNIFYRFIYETE-----RHNGIAELLEI 198 (409)
T ss_dssp CTTTS-HHHHHHHHHTTTS-STHHHHHHHHHHHHHHHHH-TTTH-HHHHHHHHHHHHHHHHTTS-------STHHHHHHH
T ss_pred HHHHcCHHHHHHHHHHcCC-CCHHHHHHHHHHHHHHHHHhhhhH-HHHHHHHHHHHHHHhcCcc-----cccCHHHHHHH
Confidence 4445677889999999988 566666666666555432 22222 2222233444555555421 22223444444
Q ss_pred HHHhcCC----CCHHHHHHHHHcCChHHHHHHhhcCCh-HHHHHHHHHHhhhhhcCCCCCCCCCCCCcccccCCCCCCcc
Q 001833 794 LRRFTAP----TNLEWQKRAAEAGVIPKLVQLLEYGTT-LTKEHAATSLARFSKNSLGLSRPIPKRKGFWCFSPPPEIGC 868 (1008)
Q Consensus 794 L~~L~~~----~~~~~~~~l~~~g~l~~Lv~lL~~~~~-~v~~~Aa~aL~nLs~~~~~l~~~~~~~~g~~~~~~~~~~~c 868 (1008)
++.+..+ ..++....+ ..-++| |.....- .-...-..++..+...++.+
T Consensus 199 l~sii~gf~~plk~eh~~fl-~~vllP----Lh~~~~~~~y~~~L~~~~~~f~~kdp~l--------------------- 252 (409)
T PF01603_consen 199 LGSIINGFAVPLKEEHKQFL-RKVLLP----LHKSPHLSSYHQQLSYCVVQFLEKDPSL--------------------- 252 (409)
T ss_dssp HHHHHTT--SS--HHHHHHH-HHTTGG----GGGSTGGGGTHHHHHHHHHHHHHH-GGG---------------------
T ss_pred HHHHHhccCCCCcHHHHHHH-HHHHHH----HhcCCcHHHHHHHHHHHHHHHHHhCchh---------------------
Confidence 4444443 123333222 122222 2222211 22233333444444322221
Q ss_pred cccCcccCcccchhHhhccchHHHHHhhcCCChhhhHHHHHHHHhhhcccccchhhHHHHhcCchHHHHHHhcCCChHHH
Q 001833 869 QVHGGLCGIESSFCLLEANAVRPLVRVLEDPDHGACEASLDALVTLIEGERLQNGSKVLEDANAIDRMVRFLSSPSPKLQ 948 (1008)
Q Consensus 869 ~vh~~~c~~~~~~~l~~~g~i~~Lv~lL~~~d~~v~~~al~aL~~L~~~~~~~~~~~~i~~~~~i~~l~~ll~~~~~~l~ 948 (1008)
...++..++..-.-.++.-...-+.-+..++..-....... ........+.+++.+.+-.|-
T Consensus 253 ----------------~~~~i~~llk~WP~t~s~Kev~FL~el~~il~~~~~~~f~~--i~~~lf~~la~ci~S~h~qVA 314 (409)
T PF01603_consen 253 ----------------AEPVIKGLLKHWPKTNSQKEVLFLNELEEILEVLPPEEFQK--IMVPLFKRLAKCISSPHFQVA 314 (409)
T ss_dssp ----------------HHHHHHHHHHHS-SS-HHHHHHHHHHHHHHHTT--HHHHHH--HHHHHHHHHHHHHTSSSHHHH
T ss_pred ----------------HHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhcCHHHHHH--HHHHHHHHHHHHhCCCCHHHH
Confidence 11134444444445555544444555555551100011111 112235667778889999999
Q ss_pred HHHHHHHHHHhcChHHHHHhcccc---Cch----hhh-hcccCCchhhHHHHHHHHHHhcc
Q 001833 949 EKALDSVERIFRLPEFKQKYGKSA---QMP----LVD-LTQRGNSSMKSLSARVLAHLNVL 1001 (1008)
Q Consensus 949 ~~a~~~L~~l~~~~~~~~~~~~~~---~~~----Lv~-l~~~~~~~~~~~Aa~~L~~L~~~ 1001 (1008)
++|+.++ ..+.+...+.... .+. |.+ .-.|=+..++..|..+|..|..+
T Consensus 315 ErAl~~w----~n~~~~~li~~~~~~i~p~i~~~L~~~~~~HWn~~Vr~~a~~vl~~l~~~ 371 (409)
T PF01603_consen 315 ERALYFW----NNEYFLSLISQNSRVILPIIFPALYRNSKNHWNQTVRNLAQNVLKILMEM 371 (409)
T ss_dssp HHHHGGG----GSHHHHHHHHCTHHHHHHHHHHHHSSTTSS-SSTTHHHHHHHHHHHHHTT
T ss_pred HHHHHHH----CCHHHHHHHHhChHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 9998654 3333333333222 122 333 23345788999999999988765
No 393
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=29.81 E-value=2.5e+02 Score=33.43 Aligned_cols=169 Identities=20% Similarity=0.233 Sum_probs=97.3
Q ss_pred cchHHHHHHHHHHHhccccccccCCcccccccchhHHHHHHHhhc-----------cCChHHHHHHHHHHHHhccCCChh
Q 001833 601 SSLREETATAIMHLAVSTMYQESSQTPVTLLESDKEIFMLFSLIN-----------LTGPNVQQRILQTFNALCRSPSAG 669 (1008)
Q Consensus 601 ~~~~~~a~~~L~nLa~~~~~~~~~~~~~~~l~~~~~i~~L~~ll~-----------~~~~~v~~~al~aL~~L~~~~~~~ 669 (1008)
..+...|-..|..+..+ +++...|..|+.+.. ..++.+|..++..|..-....
T Consensus 251 ~~V~~~ae~~LKr~~~~-------------~ed~~~V~~L~~Ly~G~~~~~~~~~~pa~~~lq~kIL~~L~kS~~Aa--- 314 (501)
T PF13001_consen 251 SSVSDRAEDLLKRLSVS-------------LEDPDLVDRLFDLYLGKGIPPENGRPPASPRLQEKILSLLSKSVIAA--- 314 (501)
T ss_pred chHHHHHHHHHhhcCCC-------------CCCHHHHHHHHHHHHhcCCchhcCCCCCCHHHHHHHHHHHHHhHHHH---
Confidence 56888888888888653 455677888888766 245677776666555421100
Q ss_pred hHHHHhhhcCChHHHHHhhccC--ChhHHHHHHHHH---HHhccCCChhHHHhhhcccchHHHHHHhc-------CCCCH
Q 001833 670 NIKTTLTQCSAIPVLVQLCEHD--NENVRANAVKLF---CCLVDDGDEAIIREHVGQKCLETLVTIIQ-------SSHNE 737 (1008)
Q Consensus 670 ~~~~~i~e~~~i~~Lv~ll~~~--~~~v~~~a~~~L---~~Ls~~~~~~~~~~~~~~~~i~~Lv~lL~-------~~~~~ 737 (1008)
..-...+..+..-+.+. +..++..+...+ ........+..+. .+.......+..++. ...+.
T Consensus 315 -----~~~~~~~~i~~~~l~~~~~~~klk~~~l~F~~~~~~~~~~~~~~~l~-~l~~~i~~~g~p~~~~~~~~~~~~~~~ 388 (501)
T PF13001_consen 315 -----TSFPNILQIVFDGLYSDNTNSKLKSLALQFIRGSSWIFKHISPQILK-LLRPVILSQGWPLIQDSSSQSNSSEDI 388 (501)
T ss_pred -----hCCccHHHHHhccccCCccccccchhcchhhhcchHHhhhcCHHHHH-HHHHHHHhcCccccccccccCCCcccH
Confidence 01112233444444555 567777777777 5554233333222 223333333344442 11355
Q ss_pred HHHHHHHHHHhcCCC-ChhhHHHHHhcCCHHHHHHHhhCCCCCCCchhhHHHHHHHHHHHhcC
Q 001833 738 EEIASAMGILSKLPE-VPQFTQWLLDAGALPIVLNFLKNGRQNDPNRFQVVENAVGALRRFTA 799 (1008)
Q Consensus 738 ~v~~~a~~~L~nL~~-~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~v~~~a~~aL~~L~~ 799 (1008)
+.+..+-.+||.|+. .+... .-+.+.+..|..-|.+ ..++++-..-.+|..++.
T Consensus 389 ~lR~~aYe~lG~L~~~~p~l~--~~d~~li~~LF~sL~~------~~~evr~sIqeALssl~~ 443 (501)
T PF13001_consen 389 ELRSLAYETLGLLAKRAPSLF--SKDLSLIEFLFDSLED------ESPEVRVSIQEALSSLAP 443 (501)
T ss_pred HHHHHHHHHHHHHHccCcccc--cccHHHHHHHHHHhhC------cchHHHHHHHHHHHHHHH
Confidence 778888889999887 44332 1235567788888865 556677777777776664
No 394
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=29.47 E-value=39 Score=37.65 Aligned_cols=34 Identities=29% Similarity=0.614 Sum_probs=25.6
Q ss_pred ceeccCcccccH-----HHHHHHHhc------------CCCCCCCcCccCC
Q 001833 278 PVETSSGQTFER-----SAIEKWFSD------------GNNLCPLTMTVLD 311 (1008)
Q Consensus 278 pv~~~~g~t~~r-----~~i~~w~~~------------~~~~cp~~~~~l~ 311 (1008)
|..-.|++-||| +|+.+||-. |.-+||.||.++.
T Consensus 301 ~~~~~C~~C~CRPmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~FC 351 (358)
T PF10272_consen 301 PNEPPCQQCYCRPMWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKFC 351 (358)
T ss_pred ccCCCCccccccchHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCcccce
Confidence 444578888987 899999942 4567999988764
No 395
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=29.27 E-value=6e+02 Score=25.54 Aligned_cols=148 Identities=14% Similarity=0.257 Sum_probs=88.6
Q ss_pred ChHHHHHhhccCChhHHHHHHHHHHHhccCCChhHHHhhhcccchHHHHHHhcCCCCHHHHHHHHHHHhcCCC-ChhhHH
Q 001833 680 AIPVLVQLCEHDNENVRANAVKLFCCLVDDGDEAIIREHVGQKCLETLVTIIQSSHNEEEIASAMGILSKLPE-VPQFTQ 758 (1008)
Q Consensus 680 ~i~~Lv~ll~~~~~~v~~~a~~~L~~Ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~v~~~a~~~L~nL~~-~~~~~~ 758 (1008)
.++.+++++.+.+..++..|+.++..+.+.|-- --...+|.|+.+..+ +++.++..|...+..+.. .+....
T Consensus 9 yl~~Il~~~~~~~~~vr~~Al~~l~~il~qGLv------nP~~cvp~lIAL~ts-~~~~ir~~A~~~l~~l~eK~~s~v~ 81 (187)
T PF12830_consen 9 YLKNILELCLSSDDSVRLAALQVLELILRQGLV------NPKQCVPTLIALETS-PNPSIRSRAYQLLKELHEKHESLVE 81 (187)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCC------ChHHHHhHhhhhhCC-CChHHHHHHHHHHHHHHHHhHHHHH
Confidence 578888999999999999999999888643310 011468889988888 677899999999999977 555544
Q ss_pred HHHhcCCHHHHHHHhhC-CCCCCCchhhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHHHhhcC--------ChHH
Q 001833 759 WLLDAGALPIVLNFLKN-GRQNDPNRFQVVENAVGALRRFTAPTNLEWQKRAAEAGVIPKLVQLLEYG--------TTLT 829 (1008)
Q Consensus 759 ~l~~~g~l~~Lv~lL~~-~~~~~~~~~~v~~~a~~aL~~L~~~~~~~~~~~l~~~g~l~~Lv~lL~~~--------~~~v 829 (1008)
.-+..| +..-..+-.. ..+...........-..-+..+..+ +...++.+ +..|++.+... .+.-
T Consensus 82 ~~~~~g-i~~af~~~~~l~~~~~~~~~~~~~~~l~~ly~ll~~-~r~~R~~F-----l~~l~k~f~~~~~~~~~~~~~~~ 154 (187)
T PF12830_consen 82 SRYSEG-IRLAFDYQRRLSSDSRGARRGPPSAFLSRLYSLLRS-NRKSRRKF-----LKSLLKQFDFDLTKLSSESSPSD 154 (187)
T ss_pred HHHHHH-HHHHHHHHHHhcCCccccccccchHHHHHHHHHHhc-ccHhHHHH-----HHHHHHHHHhhccccccccchhH
Confidence 444444 2222222221 1000000000144555566666664 56666555 45566666542 2344
Q ss_pred HHHHHHHHhhhh
Q 001833 830 KEHAATSLARFS 841 (1008)
Q Consensus 830 ~~~Aa~aL~nLs 841 (1008)
.........||+
T Consensus 155 l~~~~Fla~nLA 166 (187)
T PF12830_consen 155 LDFLLFLAENLA 166 (187)
T ss_pred HHHHHHHHHHHh
Confidence 455566666665
No 396
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=29.21 E-value=1.7e+03 Score=31.13 Aligned_cols=315 Identities=12% Similarity=0.098 Sum_probs=0.0
Q ss_pred cHHHHHHHHhcCCHHH-------HHHHHHHHHHHcCChhhHHHHhhcC----cHHHHHHHhccCCHHHHHHHHHHHHHhh
Q 001833 503 YFKHLLQRLSAGPESV-------KMRMATTLAEMELTDHHKASLLEGN----VLGPLLHLVSRGDIQMKKVAVKALRNLS 571 (1008)
Q Consensus 503 ~v~~Lv~~L~~~~~~~-------~~~aa~~L~~Ls~~~~~k~~i~~~g----~i~~Lv~lL~~~~~~~~~~A~~aL~~L~ 571 (1008)
.+..++..|-.-+.+- +.-++.-|..++...-+|..+.=.. +-+.++..-.+.+..+...|+..|..|+
T Consensus 1086 ai~~fv~AL~~vS~eEl~~~~~pr~FsLqKLveIa~~Nm~Rirl~W~~iW~~l~~hf~~vg~~~n~~va~fAidsLrQLs 1165 (1780)
T PLN03076 1086 AIIDFVKALCKVSMEELRSPSDPRVFSLTKIVEIAHYNMNRIRLVWSSIWHVLSDFFVTIGCSENLSIAIFAMDSLRQLS 1165 (1780)
T ss_pred HHHHHHHHHHHhhHHHHccCCCCchhHHHHHHHHHHhcccchheehHhHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHH
Q ss_pred CCCchhHH----HHhcCChHHHHHHhcccCCCCcchHHHHHHHHHHHhccccccccCCcccccccchhHHHHHHHhhc--
Q 001833 572 SVPQNGLQ----MIKEGAVGPLVDLLLHHSSSSSSLREETATAIMHLAVSTMYQESSQTPVTLLESDKEIFMLFSLIN-- 645 (1008)
Q Consensus 572 ~~~~~~~~----i~~~G~v~~Ll~ll~~~~~~~~~~~~~a~~~L~nLa~~~~~~~~~~~~~~~l~~~~~i~~L~~ll~-- 645 (1008)
..--.+.. -.+...+.++..++..... .++++..+.++.+|.......-. .++..++.++.
T Consensus 1166 ~kfle~eEL~~f~FQkefLkPfe~im~~s~~--~eVrE~ILeCv~qmI~s~~~nIk-----------SGWktIF~VLs~a 1232 (1780)
T PLN03076 1166 MKFLEREELANYNFQNEFMKPFVIVMRKSNA--VEIRELIIRCVSQMVLSRVNNVK-----------SGWKSMFMVFTTA 1232 (1780)
T ss_pred HHhcchhhhhchhHHHHHHHHHHHHHHhcCc--hHHHHHHHHHHHHHHHHHHhhhh-----------cCcHHHHHHHHHH
Q ss_pred --cCChHHHHHHHHHHHHhccCCChhhH---HHHhhhcCChHHHHHhhccC-ChhHHHHHHHHHHHhccCC---------
Q 001833 646 --LTGPNVQQRILQTFNALCRSPSAGNI---KTTLTQCSAIPVLVQLCEHD-NENVRANAVKLFCCLVDDG--------- 710 (1008)
Q Consensus 646 --~~~~~v~~~al~aL~~L~~~~~~~~~---~~~i~e~~~i~~Lv~ll~~~-~~~v~~~a~~~L~~Ls~~~--------- 710 (1008)
...+.+...+..++..++.+.-..-. ...+.+ .+..|..+.... +.++-..|+..|++++..-
T Consensus 1233 a~d~~e~iV~lAFetl~~I~~d~f~~l~~~~~~~F~D--lV~cL~~Fa~q~~~~nISL~AI~lL~~~~~~La~~~~~~~~ 1310 (1780)
T PLN03076 1233 AYDDHKNIVLLAFEIIEKIIREYFPYITETETTTFTD--CVNCLIAFTNSRFNKDISLNAIAFLRFCATKLAEGDLGSSS 1310 (1780)
T ss_pred HhCccHHHHHHHHHHHHHHHHhhhhhccccchhHHHH--HHHHHHHHHhCcCcccccHHHHHHHHHHHHHHHhccccccc
Q ss_pred -------------------------ChhHHHhhhcccchHHHHHHhcCCCCHHHHHHHHHHHhcCCC-----ChhhHHHH
Q 001833 711 -------------------------DEAIIREHVGQKCLETLVTIIQSSHNEEEIASAMGILSKLPE-----VPQFTQWL 760 (1008)
Q Consensus 711 -------------------------~~~~~~~~~~~~~i~~Lv~lL~~~~~~~v~~~a~~~L~nL~~-----~~~~~~~l 760 (1008)
.+......+--..+..|..+..+ +..+|+..|+..|-.+-. -+......
T Consensus 1311 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~D-~RlEVR~~ALqtLF~iL~~yG~~Fs~~~W~~ 1389 (1780)
T PLN03076 1311 RNKDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWFPLLAGLSELSFD-PRPEIRKSALQVLFDTLRNHGHLFSLPLWER 1389 (1780)
T ss_pred cccccccccccccccccccccccccccchhHHHHHHHHHHHHHHHhcC-CcHHHHHHHHHHHHHHHHHhhccCCHHHHHH
Q ss_pred HhcCCHHHHHHHhh-----------------------CCCCCCCchhhHHHHHHHHHHHhcCCCCHHHHHHHHHc--CCh
Q 001833 761 LDAGALPIVLNFLK-----------------------NGRQNDPNRFQVVENAVGALRRFTAPTNLEWQKRAAEA--GVI 815 (1008)
Q Consensus 761 ~~~g~l~~Lv~lL~-----------------------~~~~~~~~~~~v~~~a~~aL~~L~~~~~~~~~~~l~~~--g~l 815 (1008)
+=.+++-++..-++ + .+.++.+.+..+|..++.- -..+-..+... +++
T Consensus 1390 if~~VLFPIFd~l~~~~~~~~~~~~~~~~~~~~~~~~e------~~~Wl~eT~~~AL~~lvdL-ft~fFd~L~~~L~~~l 1462 (1780)
T PLN03076 1390 VFESVLFPIFDYVRHAIDPSGGDEPEGQGVDGDQGELD------QDAWLYETCTLALQLVVDL-FVKFYPTVNPLLKKVL 1462 (1780)
T ss_pred HHHHHHHHHHHHHHHhhccccccccccccccccccchh------hhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Q ss_pred HHHHHHhhcCChHHHHHHHHHHhhh
Q 001833 816 PKLVQLLEYGTTLTKEHAATSLARF 840 (1008)
Q Consensus 816 ~~Lv~lL~~~~~~v~~~Aa~aL~nL 840 (1008)
..|...+...+..+-+-...+|.+|
T Consensus 1463 ~ll~~ci~q~n~~la~ig~~~l~~l 1487 (1780)
T PLN03076 1463 MLLVSFIKRPHQSLAGIGIAAFVRL 1487 (1780)
T ss_pred HHHHHHHcCchHHHHHHHHHHHHHH
No 397
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=29.04 E-value=46 Score=25.85 Aligned_cols=28 Identities=18% Similarity=0.437 Sum_probs=23.2
Q ss_pred ccccccccccc--CCceecc--CcccccHHHH
Q 001833 265 SFYCPITRDVM--VDPVETS--SGQTFERSAI 292 (1008)
Q Consensus 265 ~~~cpi~~~~m--~dpv~~~--~g~t~~r~~i 292 (1008)
.-+||+|++.+ .|.++++ ||-.|=|.|-
T Consensus 5 ~~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~ 36 (54)
T PF14446_consen 5 GCKCPVCGKKFKDGDDIVVCPECGAPYHRDCW 36 (54)
T ss_pred CccChhhCCcccCCCCEEECCCCCCcccHHHH
Confidence 45899999999 7887774 8999999873
No 398
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=28.25 E-value=1.4e+02 Score=23.15 Aligned_cols=33 Identities=30% Similarity=0.653 Sum_probs=21.0
Q ss_pred ccccccccccccCCceeccCcccccHHHHHHHHhc------CCCCCCCcCc
Q 001833 264 QSFYCPITRDVMVDPVETSSGQTFERSAIEKWFSD------GNNLCPLTMT 308 (1008)
Q Consensus 264 ~~~~cpi~~~~m~dpv~~~~g~t~~r~~i~~w~~~------~~~~cp~~~~ 308 (1008)
+.|.||.|++ .|+...+.+++.. ....||+|..
T Consensus 1 ~~f~CP~C~~------------~~~~~~L~~H~~~~H~~~~~~v~CPiC~~ 39 (54)
T PF05605_consen 1 DSFTCPYCGK------------GFSESSLVEHCEDEHRSESKNVVCPICSS 39 (54)
T ss_pred CCcCCCCCCC------------ccCHHHHHHHHHhHCcCCCCCccCCCchh
Confidence 3689998655 3455555665542 2456999965
No 399
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=27.94 E-value=27 Score=38.24 Aligned_cols=44 Identities=18% Similarity=0.195 Sum_probs=33.7
Q ss_pred ccccccccccccCCceeccCcccccHHHHHHHHhcCCCCCCCcCccCC
Q 001833 264 QSFYCPITRDVMVDPVETSSGQTFERSAIEKWFSDGNNLCPLTMTVLD 311 (1008)
Q Consensus 264 ~~~~cpi~~~~m~dpv~~~~g~t~~r~~i~~w~~~~~~~cp~~~~~l~ 311 (1008)
..-.|-||.+=.++-+-++|||+-|=..+.++ .+.||+|++...
T Consensus 304 ~p~lcVVcl~e~~~~~fvpcGh~ccct~cs~~----l~~CPvCR~rI~ 347 (355)
T KOG1571|consen 304 QPDLCVVCLDEPKSAVFVPCGHVCCCTLCSKH----LPQCPVCRQRIR 347 (355)
T ss_pred CCCceEEecCCccceeeecCCcEEEchHHHhh----CCCCchhHHHHH
Confidence 44579999999999999999999884334434 455999988763
No 400
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=27.83 E-value=39 Score=42.72 Aligned_cols=46 Identities=24% Similarity=0.287 Sum_probs=37.0
Q ss_pred ccccccccc-----cCCceecc--CcccccHHHHHHHHhcCCCCCCCcCccCC
Q 001833 266 FYCPITRDV-----MVDPVETS--SGQTFERSAIEKWFSDGNNLCPLTMTVLD 311 (1008)
Q Consensus 266 ~~cpi~~~~-----m~dpv~~~--~g~t~~r~~i~~w~~~~~~~cp~~~~~l~ 311 (1008)
-.|.||++- +-+|-+.+ ||.-.||.|-+--.++|+..||.|+.+..
T Consensus 16 ~~c~iCGd~vg~~~~Ge~FVAC~eC~fpvCr~cyeye~~~g~~~cp~c~t~y~ 68 (1044)
T PLN02915 16 KTCRVCGDEVGVKEDGQPFVACHVCGFPVCKPCYEYERSEGNQCCPQCNTRYK 68 (1044)
T ss_pred chhhccccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchh
Confidence 478888764 55788764 78889999997777789999999987665
No 401
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=27.75 E-value=1.3e+03 Score=28.90 Aligned_cols=469 Identities=14% Similarity=0.155 Sum_probs=0.0
Q ss_pred HHHHHHhccChhHHHHHHHHHHHhccCchhhHHhhcccchHHHHHHHhcCC--ChHHHHHHHHHHHhhcC-----Cccc-
Q 001833 423 ESIVRSLGRRIEERKLAVALLLELSTCNTLRDQIGDVQGCILLLVTMASSD--DNQASRDAQELLENLSF-----SDDN- 494 (1008)
Q Consensus 423 ~~Lv~~L~~~~~~~~~A~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~--~~~~~~~a~~aL~~Ls~-----~~~n- 494 (1008)
..+.+-|..++..++.|-..|..+.. ..|..-.|++++.++ |+.++..|...+.|-+. ..++
T Consensus 9 ~~l~qTl~pdps~rk~aEr~L~~~e~----------q~~y~l~lL~Lv~~~~~d~~~r~aaav~fKN~iKr~W~~~~~~~ 78 (960)
T KOG1992|consen 9 NYLLQTLSPDPSVRKPAERALRSLEG----------QQNYPLLLLNLVANGQQDPQIRVAAAVYFKNYIKRNWIPAEDSP 78 (960)
T ss_pred HHHHhcCCCCCccCchHHHHHHHhcc----------CCCchHHHHHHHhccCcChhHHHHHHHHHHHHHHhccCcCCCCc
Q ss_pred -HHHHHhcCcHHH-HHHHHhcCCHHHHHHHHHHHHHHcCCh-hhHHHHhhcCcHHHHHHHhccCCHHHHHHHHHHHHHhh
Q 001833 495 -VVQMAKANYFKH-LLQRLSAGPESVKMRMATTLAEMELTD-HHKASLLEGNVLGPLLHLVSRGDIQMKKVAVKALRNLS 571 (1008)
Q Consensus 495 -~~~i~~~g~v~~-Lv~~L~~~~~~~~~~aa~~L~~Ls~~~-~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~~L~ 571 (1008)
+..-.+...+.. ++.++-+.+..++.+--.+|+.++..| ..|. ...+|-|+.-+++++-..-...+..-..+-
T Consensus 79 ~~i~~~~~e~ikslIv~lMl~s~~~iQ~qlseal~~Ig~~DFP~kW----ptLl~dL~~~ls~~D~~~~~gVL~tahsiF 154 (960)
T KOG1992|consen 79 IKIIEEDREQIKSLIVTLMLSSPFNIQKQLSEALSLIGKRDFPDKW----PTLLPDLVARLSSGDFNVINGVLVTAHSIF 154 (960)
T ss_pred cccchhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhccccchhh----HHHHHHHHhhccccchHHHHHHHHHHHHHH
Q ss_pred C--CCchhHHHHhcCChHHHHHHhcccCCCCcchHHHHHHHHHHHhccccccccCCcccccccchhHHHHHHHhhccCCh
Q 001833 572 S--VPQNGLQMIKEGAVGPLVDLLLHHSSSSSSLREETATAIMHLAVSTMYQESSQTPVTLLESDKEIFMLFSLINLTGP 649 (1008)
Q Consensus 572 ~--~~~~~~~i~~~G~v~~Ll~ll~~~~~~~~~~~~~a~~~L~nLa~~~~~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~ 649 (1008)
. .++.|....=..+.-.|-..-..- ..+-..+.....+.+. +++.+..++..+
T Consensus 155 kr~R~efrSdaL~~EIK~vLd~f~~Pl----t~Lf~~t~~l~~~~~~----------------~~~~l~~lf~vl----- 209 (960)
T KOG1992|consen 155 KRYRPEFRSDALWLEIKLVLDRFAEPL----TDLFRKTMELIQRHAN----------------DAAALNILFGVL----- 209 (960)
T ss_pred HhcCcccccHHHHHHHHHHHHhhHhHH----HHHHHHHHHHHhhccc----------------chhHHHHHHHHH-----
Q ss_pred HHHHHHHHHHHHhccCCChhhHHHHhhhcCChHHHHHhhc-------------cCChhHHHHHHHHHHHhccCCChhHHH
Q 001833 650 NVQQRILQTFNALCRSPSAGNIKTTLTQCSAIPVLVQLCE-------------HDNENVRANAVKLFCCLVDDGDEAIIR 716 (1008)
Q Consensus 650 ~v~~~al~aL~~L~~~~~~~~~~~~i~e~~~i~~Lv~ll~-------------~~~~~v~~~a~~~L~~Ls~~~~~~~~~ 716 (1008)
.-+++.++.|....-++=.-+.+.+ ..+.+..++. .-=.+++...|..+..-+ ..-++..+
T Consensus 210 ---ll~~klfysLn~QDiPEFFEdnm~~--wM~~F~k~l~~~~p~le~~~ee~~~l~~lka~ICEi~~LY~-~kYeEef~ 283 (960)
T KOG1992|consen 210 ---LLICKLFYSLNFQDIPEFFEDNMKT--WMGAFHKLLTYDNPLLESDEEEATVLDKLKAQICEIFNLYA-TKYEEEFQ 283 (960)
T ss_pred ---HHHHHHHHhhhcccchHHHHhhHHH--HHHHHHHHHhccCcccccCcccccHHHHHHHHHHHHHHHHH-HhhHHHHH
Q ss_pred hhhcccchHHHHHHhcCC----CCHHHHHHHHHHHhcCCCChhhHHHHHhcCCHHHHHHHhhCCCCCCCchhhHHHHHHH
Q 001833 717 EHVGQKCLETLVTIIQSS----HNEEEIASAMGILSKLPEVPQFTQWLLDAGALPIVLNFLKNGRQNDPNRFQVVENAVG 792 (1008)
Q Consensus 717 ~~~~~~~i~~Lv~lL~~~----~~~~v~~~a~~~L~nL~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~v~~~a~~ 792 (1008)
.++. ..+.....+|.+- .-+.....|+..|.+.+..+.........+++..+.+...-
T Consensus 284 ~fl~-~fv~~~W~LL~~~s~~~kyD~Lvs~Al~FLt~V~~r~~y~~~F~~~~vl~~i~e~Vvl----------------- 345 (960)
T KOG1992|consen 284 PFLP-DFVTATWNLLVSTSPDTKYDYLVSKALQFLTSVSRRPHYAELFEGENVLAQICEKVVL----------------- 345 (960)
T ss_pred hhHH-HHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHhhhhhHhhhcchHHHHHHHHhhcc-----------------
Q ss_pred HHHHhcCCCCHHHHHHHHHcCChHHHHHHhhcCCh-HHHHHHHHHHhhhhhcCCCCCCCCCCCCcccccCCCCCCccccc
Q 001833 793 ALRRFTAPTNLEWQKRAAEAGVIPKLVQLLEYGTT-LTKEHAATSLARFSKNSLGLSRPIPKRKGFWCFSPPPEIGCQVH 871 (1008)
Q Consensus 793 aL~~L~~~~~~~~~~~l~~~g~l~~Lv~lL~~~~~-~v~~~Aa~aL~nLs~~~~~l~~~~~~~~g~~~~~~~~~~~c~vh 871 (1008)
-|++. ...-..+.+.+.+..+-+-|...|. .-|+.|+..++.|+..-+.
T Consensus 346 --pN~~l---R~eDeElFED~pleYiRRDlEGsDvdTRRR~a~dlvrgL~~~fe~------------------------- 395 (960)
T KOG1992|consen 346 --PNLIL---REEDEELFEDNPLEYIRRDLEGSDVDTRRRAAIDLVRGLCKNFEG------------------------- 395 (960)
T ss_pred --ccccc---chhhHHHhccCHHHHHHHhcccCCcchhHHHHHHHHHHHHHHhcc-------------------------
Q ss_pred CcccCcccchhHhhccchHHHHH-hhc------CCChhhhHHHHHHHHhhh-cccccchhhHHHHhcCch------HHHH
Q 001833 872 GGLCGIESSFCLLEANAVRPLVR-VLE------DPDHGACEASLDALVTLI-EGERLQNGSKVLEDANAI------DRMV 937 (1008)
Q Consensus 872 ~~~c~~~~~~~l~~~g~i~~Lv~-lL~------~~d~~v~~~al~aL~~L~-~~~~~~~~~~~i~~~~~i------~~l~ 937 (1008)
...+++..-++ +|+ +.|+.-...++.-...+. .+.....+.....+.=++ ..+-
T Consensus 396 ------------~vt~v~~~~v~~~l~~y~~nPS~nWk~kd~aiyL~talaik~~t~~~Gvtstn~lvdv~~Ff~~~ilp 463 (960)
T KOG1992|consen 396 ------------QVTGVFSSEVQRLLDQYSKNPSGNWKKKDRAIYLVTALAIKGQTAKHGVTSTNELVDVVDFFANQILP 463 (960)
T ss_pred ------------hhHHHHHHHHHHHHHHhccCCCccccccchhhhhhHHHHhhcchhhcceeeccccccHHHHHHHHhhH
Q ss_pred HHhc---CCChHHHHHHHHHHHHHhcChHHHHHhccccCchhhhhcccCCchhhHHHHHHHHHH
Q 001833 938 RFLS---SPSPKLQEKALDSVERIFRLPEFKQKYGKSAQMPLVDLTQRGNSSMKSLSARVLAHL 998 (1008)
Q Consensus 938 ~ll~---~~~~~l~~~a~~~L~~l~~~~~~~~~~~~~~~~~Lv~l~~~~~~~~~~~Aa~~L~~L 998 (1008)
.+.+ ...|-++..+++-+..+-+.-.-...+. ..+.+++.++.+...+...||.++..+
T Consensus 464 ~L~s~~vn~~pilka~aIKy~~~FR~ql~~~~lm~--~~p~li~~L~a~s~vvhsYAA~aiEki 525 (960)
T KOG1992|consen 464 DLLSPNVNEFPILKADAIKYIYTFRNQLGKEHLMA--LLPRLIRFLEAESRVVHSYAAIAIEKL 525 (960)
T ss_pred HhccCccccccchhhcccceeeeecccCChHHHHH--HHHHHHHhccCcchHHHHHHHHHHHhc
No 402
>PF04821 TIMELESS: Timeless protein; InterPro: IPR006906 The timeless gene in Drosophila melanogaster (Fruit fly) and its homologues in a number of other insects and mammals (including human) are involved in circadian rhythm control []. This family includes related proteins from a number of fungal species and from Arabidopsis thaliana.
Probab=27.41 E-value=7.9e+02 Score=26.34 Aligned_cols=57 Identities=25% Similarity=0.296 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHhhch-h---hhhhHhhcCchH-HHHHHHcC--CCHHHHHHHHHHHHHhcc
Q 001833 350 EEVLHCLEQLQDLCQQRD-Q---HREWVILENYIP-KLIYLLGS--KNRDVRNRALIILHILVK 406 (1008)
Q Consensus 350 ~~~~~al~~L~~l~~~~~-~---~r~~i~~~g~i~-~L~~lL~s--~~~~~~~~Al~~L~~Ls~ 406 (1008)
++...+++.|..+.+.++ . .|.++++.+.++ -|+.+|.+ +++.+-..+++.|.+|+.
T Consensus 9 ~dcl~~LkdL~r~lr~dd~~~~~v~r~lg~~~iv~~DLiPiL~~~~~~~~l~~~~l~LLV~LT~ 72 (266)
T PF04821_consen 9 DDCLECLKDLKRFLRRDDEDQRDVRRQLGEWNIVQKDLIPILISYKDDDKLFLACLRLLVNLTW 72 (266)
T ss_pred HhHHHHHHHHHHHHHHhCcchHHHHHHHHHhchhhhhHHHHHHhccCchHHHHHHHHHHHHhCC
Confidence 345566666665554332 2 256666666665 56666654 356777888888888876
No 403
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=27.21 E-value=23 Score=27.17 Aligned_cols=44 Identities=18% Similarity=0.240 Sum_probs=32.0
Q ss_pred cccccccccCCceeccCccc-ccHHHHHHHHhcCCCCCCCcCccC
Q 001833 267 YCPITRDVMVDPVETSSGQT-FERSAIEKWFSDGNNLCPLTMTVL 310 (1008)
Q Consensus 267 ~cpi~~~~m~dpv~~~~g~t-~~r~~i~~w~~~~~~~cp~~~~~l 310 (1008)
-|-||.|--.|.|+--|||- .|-.|=-+-+..++..||.++.+.
T Consensus 9 ECTICye~pvdsVlYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi 53 (62)
T KOG4172|consen 9 ECTICYEHPVDSVLYTCGHMCMCYACGLRLKKALHGCCPICRAPI 53 (62)
T ss_pred ceeeeccCcchHHHHHcchHHhHHHHHHHHHHccCCcCcchhhHH
Confidence 58888888788888899984 344454444445788999998765
No 404
>PRK10869 recombination and repair protein; Provisional
Probab=26.78 E-value=1.2e+03 Score=28.14 Aligned_cols=76 Identities=21% Similarity=0.178 Sum_probs=48.8
Q ss_pred hhHHHHHHHHHhHHHHHHHHhcCCCCCcHhHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHhhh---HHHHHHHHHHHHH
Q 001833 41 ESFKELAAYLERIVPVLKELNKRDLSHSEGLNSAIEILNREIKGAKELTTECSKRNKVYLLMNC---RAIVKRLKDTARE 117 (1008)
Q Consensus 41 ~~~~~l~r~~~ll~~lleel~~~~~~~~~~~~~~l~~L~~~l~~a~~Ll~~c~~~Skl~l~~~~---~~~~~~~~~~~~~ 117 (1008)
++..+..+++..|..-++||...+.. |.=..-|+.-...|..+..+.+.+... |-.+.+ ..+...+..+...
T Consensus 178 ~~~~~~~~~~d~l~fql~Ei~~~~l~--~gE~eeL~~e~~~L~n~e~i~~~~~~~---~~~L~~~~~~~~~~~l~~~~~~ 252 (553)
T PRK10869 178 QQSQERAARKQLLQYQLKELNEFAPQ--PGEFEQIDEEYKRLANSGQLLTTSQNA---LQLLADGEEVNILSQLYSAKQL 252 (553)
T ss_pred HhHHHHHHHHHHHHHHHHHHHhCCCC--CCcHHHHHHHHHHHHHHHHHHHHHHHH---HHHhcCCCcccHHHHHHHHHHH
Confidence 34567788888999999999887753 233566667777777777777777654 222222 2455555555555
Q ss_pred HHHH
Q 001833 118 ISQA 121 (1008)
Q Consensus 118 ~~~~ 121 (1008)
+...
T Consensus 253 l~~~ 256 (553)
T PRK10869 253 LSEL 256 (553)
T ss_pred HHHH
Confidence 5554
No 405
>cd08329 CARD_BIRC2_BIRC3 Caspase activation and recruitment domain found in Baculoviral IAP repeat-containing proteins, BIRC2 (c-IAP1) and BIRC3 (c-IAP2). Caspase activation and recruitment domain (CARD) similar to those found in Baculoviral IAP repeat (BIR)-containing protein 2 (BIRC2) or cellular Inhibitor of Apoptosis Protein 1 (c-IAP1), and BIRC3 (or c-IAP2). IAPs are anti-apoptotic proteins that contain at least one BIR domain. Most IAPs also contain a C-terminal RING domain. In addition, both BIRC2 and BIRC3 contain a CARD. BIRC2 and BIRC3, through their binding with TRAF (TNF receptor-associated factor) 2, are recruited to TNFR-1/2 signaling complexes, where they regulate caspase-8 activity. They also play important roles in pro-survival NF-kB signaling pathways. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation and host-defense mechanisms. DDs are protein-protein interac
Probab=26.69 E-value=1.5e+02 Score=26.13 Aligned_cols=63 Identities=19% Similarity=0.223 Sum_probs=45.1
Q ss_pred CcccchhhHHHHHHHHHhHHHHHHHHhcCCCCCcHhHHHHHHHHHHHHHHHHHHHHHhh-hhhhH
Q 001833 35 NVLIKKESFKELAAYLERIVPVLKELNKRDLSHSEGLNSAIEILNREIKGAKELTTECS-KRNKV 98 (1008)
Q Consensus 35 ~~~~~~~~~~~l~r~~~ll~~lleel~~~~~~~~~~~~~~l~~L~~~l~~a~~Ll~~c~-~~Skl 98 (1008)
+..+-|+|-..|++++.-..|+++.+...++ +.+.-......-...-++|+.|+..-. .|++-
T Consensus 7 ~~~~L~~~R~~Lv~~l~~v~~ilD~Ll~~~V-lt~ee~e~I~~~~t~~~qAr~Lld~l~~KG~~A 70 (94)
T cd08329 7 DLSLIRKNRMALFQHLTSVLPILDSLLSANV-ITEQEYDVIKQKTQTPLQARELIDTVLVKGNAA 70 (94)
T ss_pred HHHHHHHhHHHHHHHHhhhHHHHHHHHHcCC-CCHHHHHHHHcCCChHHHHHHHHHHHHhhhHHH
Confidence 3446688888999999889999999998775 444444555554555689999988755 44443
No 406
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=26.54 E-value=1.1e+02 Score=37.52 Aligned_cols=41 Identities=20% Similarity=0.442 Sum_probs=33.2
Q ss_pred ccccccccccccCCceec-cCcccccHHHHHHHHhcCCCCCCCcCc
Q 001833 264 QSFYCPITRDVMVDPVET-SSGQTFERSAIEKWFSDGNNLCPLTMT 308 (1008)
Q Consensus 264 ~~~~cpi~~~~m~dpv~~-~~g~t~~r~~i~~w~~~~~~~cp~~~~ 308 (1008)
+.=.|..|.-.+.=|++- .|||.|-+.|.+ ++...||.|..
T Consensus 839 q~skCs~C~~~LdlP~VhF~CgHsyHqhC~e----~~~~~CP~C~~ 880 (933)
T KOG2114|consen 839 QVSKCSACEGTLDLPFVHFLCGHSYHQHCLE----DKEDKCPKCLP 880 (933)
T ss_pred eeeeecccCCccccceeeeecccHHHHHhhc----cCcccCCccch
Confidence 344788887777788775 799999999988 67788999966
No 407
>PF03130 HEAT_PBS: PBS lyase HEAT-like repeat; InterPro: IPR004155 These proteins contain a short bi-helical repeat that is related to HEAT. Cyanobacteria and red algae harvest light energy using macromolecular complexes known as phycobilisomes (PBS), peripherally attached to the photosynthetic membrane. The major components of PBS are the phycobiliproteins. These heterodimeric proteins are covalently attached to phycobilins: open-chain tetrapyrrole chromophores, which function as the photosynthetic light-harvesting pigments. Phycobiliproteins differ in sequence and in the nature and number of attached phycobilins to each of their subunits. These proteins include the lyase enzymes that specifically attach particular phycobilins to apophycobiliprotein subunits. The most comprehensively studied of these is the CpcE/Flyase P31967 from SWISSPROT, P31968 from SWISSPROT, which attaches phycocyanobilin (PCB) to the alpha subunit of apophycocyanin []. Similarly, MpeU/V attaches phycoerythrobilin to phycoerythrin II, while CpeY/Z is thought to be involved in phycoerythrobilin (PEB) attachment to phycoerythrin (PE) I (PEs I and II differ in sequence and in the number of attached molecules of PEB: PE I has five, PE II has six) []. All the reactions of the above lyases involve an apoprotein cysteine SH addition to a terminal delta 3,3'-double bond. Such a reaction is not possible in the case of phycoviolobilin (PVB), the phycobilin of alpha-phycoerythrocyanin (alpha-PEC). It is thought that in this case, PCB, not PVB, is first added to apo-alpha-PEC, and is then isomerized to PVB. The addition reaction has been shown to occur in the presence of either of the components of alpha-PEC-PVB lyase PecE or PecF (or both). The isomerisation reaction occurs only when both PecE and PecF components are present, i.e. the PecE/F phycobiliprotein lyase is also a phycobilin isomerase []. Another member of this family is the NblB protein, whose similarity to the phycobiliprotein lyases was previously noted []. This constitutively expressed protein is not known to have any lyase activity. It is thought to be involved in the coordination of PBS degradation with environmental nutrient limitation. It has been suggested that the similarity of NblB to the phycobiliprotein lyases is due to the ability to bind tetrapyrrole phycobilins via the common repeated motif [].; PDB: 1TE4_A.
Probab=26.39 E-value=34 Score=22.21 Aligned_cols=26 Identities=15% Similarity=0.273 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHcCChhhHHHHhhcCcHHHHHHHhc
Q 001833 518 VKMRMATTLAEMELTDHHKASLLEGNVLGPLLHLVS 553 (1008)
Q Consensus 518 ~~~~aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~ 553 (1008)
+|..++.+|+.+ ++..++++|++.|.
T Consensus 1 VR~~Aa~aLg~i----------gd~~ai~~L~~~L~ 26 (27)
T PF03130_consen 1 VRRAAARALGQI----------GDPRAIPALIEALE 26 (27)
T ss_dssp HHHHHHHHHGGG-----------SHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHc----------CCHHHHHHHHHHhc
Confidence 466778888774 34557788887764
No 408
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=26.25 E-value=52 Score=36.07 Aligned_cols=51 Identities=25% Similarity=0.367 Sum_probs=39.8
Q ss_pred ceeccCcccccHHHHHHHHhcCCCCCCCcCccC--C---CCCCccCHhhHHHHHHH
Q 001833 278 PVETSSGQTFERSAIEKWFSDGNNLCPLTMTVL--D---TSILRPNKTLRQSIEEW 328 (1008)
Q Consensus 278 pv~~~~g~t~~r~~i~~w~~~~~~~cp~~~~~l--~---~~~l~pN~~l~~~I~~w 328 (1008)
|=++.||||+|-.|+.+-+..+...||.++++. . ...+..|+++-..|+..
T Consensus 22 p~~l~c~h~~c~~c~~~l~~~~~i~cpfcR~~~~~~~~~~~~l~kNf~ll~~~~~~ 77 (296)
T KOG4185|consen 22 PRVLKCGHTICQNCASKLLGNSRILCPFCRETTEIPDGDVKSLQKNFALLQAIEHM 77 (296)
T ss_pred CcccccCceehHhHHHHHhcCceeeccCCCCcccCCchhHhhhhhhHHHHHHHHHH
Confidence 556669999999999988888888899998873 2 34567777777777665
No 409
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=25.89 E-value=5e+02 Score=28.10 Aligned_cols=52 Identities=12% Similarity=0.073 Sum_probs=37.7
Q ss_pred cchHHHHHHHhcCCChHHHHHHHHHHHhhcCCcccH--HHHHhcCcHHHHHHHH
Q 001833 460 QGCILLLVTMASSDDNQASRDAQELLENLSFSDDNV--VQMAKANYFKHLLQRL 511 (1008)
Q Consensus 460 ~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~~~n~--~~i~~~g~v~~Lv~~L 511 (1008)
.-.+|+++.++.+.++..+..++.+|..+..+-... ..+.+.|..+.+-+.+
T Consensus 118 ~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al 171 (282)
T PF10521_consen 118 PLIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDAL 171 (282)
T ss_pred hHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHH
Confidence 346899999999999999999999999996543332 2455666655554443
No 410
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=24.84 E-value=4.8e+02 Score=23.94 Aligned_cols=40 Identities=23% Similarity=0.156 Sum_probs=33.3
Q ss_pred chHHHHHHHhcCCChHHHHHHHHHHHhhcCCcccHHHHHh
Q 001833 461 GCILLLVTMASSDDNQASRDAQELLENLSFSDDNVVQMAK 500 (1008)
Q Consensus 461 g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~~~n~~~i~~ 500 (1008)
-+|+.|++-|.++++.+...|+.+|...|..+.....++.
T Consensus 8 w~i~lLv~QL~D~~~~V~~~A~~iL~e~c~~~~~le~~v~ 47 (115)
T PF14663_consen 8 WGIELLVTQLYDPSPEVVAAALEILEEACEDKEYLEYLVS 47 (115)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhchhhHHHHHH
Confidence 4689999999999999999999999999887755555544
No 411
>cd08330 CARD_ASC_NALP1 Caspase activation and recruitment domain found in Human ASC, NALP1, and similar proteins. Caspase activation and recruitment domain (CARD) similar to those found in human ASC (Apoptosis-associated speck-like protein containing a CARD) and NALP1 (CARD7, NLRP1). ASC, an adaptor molecule, and NALP1, a member of the Nod-like receptor (NLR) family, are involved in the assembly of the 'inflammasome', a multiprotein platform, which is responsible for caspase-1 activation and regulation of IL-1beta maturation. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and DED (Death Effector Domain). They se
Probab=24.64 E-value=3.3e+02 Score=23.31 Aligned_cols=53 Identities=13% Similarity=0.209 Sum_probs=39.0
Q ss_pred hhhHHHHHHHHHhHHHHHHHHhcCCCCCcHhHHHHHHHHHHHHHHHHHHHHHhh
Q 001833 40 KESFKELAAYLERIVPVLKELNKRDLSHSEGLNSAIEILNREIKGAKELTTECS 93 (1008)
Q Consensus 40 ~~~~~~l~r~~~ll~~lleel~~~~~~~~~~~~~~l~~L~~~l~~a~~Ll~~c~ 93 (1008)
+++=..|+.++.-+.|+++.+...+. ..+.-......-.---++|+.|+...-
T Consensus 4 ~~~r~~Li~~v~~v~~ilD~L~~~~V-it~e~~~~I~a~~T~~~kar~Lld~l~ 56 (82)
T cd08330 4 DQHREALIARVTNVDPILDKLHGKKV-ITQEQYSEVRAEKTNQEKMRKLFSFVR 56 (82)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHCCC-CCHHHHHHHHcCCCcHHHHHHHHHHHH
Confidence 56667899999999999999997664 555555555554455678888887654
No 412
>PF11229 DUF3028: Protein of unknown function (DUF3028); InterPro: IPR021392 This eukaryotic family of proteins has no known function.
Probab=24.59 E-value=1.2e+03 Score=27.46 Aligned_cols=194 Identities=16% Similarity=0.199 Sum_probs=101.2
Q ss_pred HcCChhhHHHHhhcCcHHHHHHHh-ccCCHHHHH-HHHHHHHHhhCCCch----hHHHHh--------cCChHHHHHHhc
Q 001833 529 MELTDHHKASLLEGNVLGPLLHLV-SRGDIQMKK-VAVKALRNLSSVPQN----GLQMIK--------EGAVGPLVDLLL 594 (1008)
Q Consensus 529 Ls~~~~~k~~i~~~g~i~~Lv~lL-~~~~~~~~~-~A~~aL~~L~~~~~~----~~~i~~--------~G~v~~Ll~ll~ 594 (1008)
|+.+..+|..-.....+|.-++.+ ..++|..+. .|+.-|..|...+.. +.+.++ ..+|..+.+++.
T Consensus 28 ls~cghgkaedl~~~ll~~w~ki~laeg~ptm~~laa~~GlvaLvgse~~~iQlkse~~~ss~~q~~lnevir~ltqvis 107 (589)
T PF11229_consen 28 LSVCGHGKAEDLGNRLLPAWIKIVLAEGCPTMQRLAALNGLVALVGSEGDLIQLKSEAIQSSQFQSRLNEVIRTLTQVIS 107 (589)
T ss_pred hhhcCCcchhhhhhhHHHHHHHHHHhcCCcHHHHHHHhhchhheeccccceeeehhhcccCHHHHHHHHHHHHHHHHHHc
Confidence 466667776555566777777654 456666544 445555555543332 112111 124667777776
Q ss_pred ccCCCCcchHHHHHHHHHHHhcc----ccccccCCcccccccchhHHHHHHHhhccC---C-----hHHHHHHHHHHHHh
Q 001833 595 HHSSSSSSLREETATAIMHLAVS----TMYQESSQTPVTLLESDKEIFMLFSLINLT---G-----PNVQQRILQTFNAL 662 (1008)
Q Consensus 595 ~~~~~~~~~~~~a~~~L~nLa~~----~~~~~~~~~~~~~l~~~~~i~~L~~ll~~~---~-----~~v~~~al~aL~~L 662 (1008)
... ...++.+|.|.|++|-.+ ...|..+|.--..+-....+...+..+-.. . |.....++..+...
T Consensus 108 ~sg--~iglQsn~~wlLGhLhls~~ss~~srtsvP~d~sYLpE~S~iRaai~f~i~~GkkGpe~vpp~lvkvvl~~ia~v 185 (589)
T PF11229_consen 108 FSG--VIGLQSNAAWLLGHLHLSTLSSSQSRTSVPTDFSYLPESSFIRAAIDFLIEAGKKGPESVPPSLVKVVLKPIATV 185 (589)
T ss_pred Ccc--ccccccchHHHHHHHHHhhcccccCCCCCCCccccCcchhHHHHHHHHHHHccccCCccCCHHHHHHHHHHhhhc
Confidence 432 267899999999998653 334444454445666666777766665411 1 22333344444333
Q ss_pred ccCCChhhHHHHhhhcCChHHHHHhhcc-CChhHHHHHHHHHHHhccCCChhHHHhhhcccchHHHHHHhcC
Q 001833 663 CRSPSAGNIKTTLTQCSAIPVLVQLCEH-DNENVRANAVKLFCCLVDDGDEAIIREHVGQKCLETLVTIIQS 733 (1008)
Q Consensus 663 ~~~~~~~~~~~~i~e~~~i~~Lv~ll~~-~~~~v~~~a~~~L~~Ls~~~~~~~~~~~~~~~~i~~Lv~lL~~ 733 (1008)
..+-.-+.+ +-...|-.+++. ..++++..+..+...=+ ....+...+++.-..|.++.-|+.
T Consensus 186 geS~qyPPV-------NWaalLsPLMRlnfGeEvq~lCLeiAvtQa--qSSqsAa~fLg~WlsPpli~sLs~ 248 (589)
T PF11229_consen 186 GESYQYPPV-------NWAALLSPLMRLNFGEEVQQLCLEIAVTQA--QSSQSAAMFLGSWLSPPLIHSLSV 248 (589)
T ss_pred CCCCCCCCc-------cHHHHhhHHHhccccHHHHHHHHHHHHHhc--cccccHHHHHHhhcCcchhhhhhH
Confidence 222111110 112223334443 36778777766544333 233344455555556666665544
No 413
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=24.55 E-value=7e+02 Score=30.45 Aligned_cols=152 Identities=18% Similarity=0.115 Sum_probs=84.7
Q ss_pred hHHHHHhhccCChhHHHHHHHHHHHhccCCChhHHHhh---hcccchHHHHHHhcCCCCHHHHHHHHHHHhcCCCChhhH
Q 001833 681 IPVLVQLCEHDNENVRANAVKLFCCLVDDGDEAIIREH---VGQKCLETLVTIIQSSHNEEEIASAMGILSKLPEVPQFT 757 (1008)
Q Consensus 681 i~~Lv~ll~~~~~~v~~~a~~~L~~Ls~~~~~~~~~~~---~~~~~i~~Lv~lL~~~~~~~v~~~a~~~L~nL~~~~~~~ 757 (1008)
-|.|.+-|+..+.++|.+|+.++.++---.+++...+- +-......|-.+|.++ -+.++..|..-+....+ .-
T Consensus 176 ~p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~kQf~~l~~LL~d~-~p~VRS~a~~gv~k~~s---~f 251 (1005)
T KOG1949|consen 176 KPILWRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQKQFEELYSLLEDP-YPMVRSTAILGVCKITS---KF 251 (1005)
T ss_pred hHHHHHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHHHHHHHHHHHhcCC-CchHHHHHHHHHHHHHH---HH
Confidence 35566677888999999999998887411222221111 1124566778888884 44566655543333221 00
Q ss_pred HHHHhcCCHHHHHHHhhCCCCCCCchhhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHHHhhcCChHHHHHHHHHH
Q 001833 758 QWLLDAGALPIVLNFLKNGRQNDPNRFQVVENAVGALRRFTAPTNLEWQKRAAEAGVIPKLVQLLEYGTTLTKEHAATSL 837 (1008)
Q Consensus 758 ~~l~~~g~l~~Lv~lL~~~~~~~~~~~~v~~~a~~aL~~L~~~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~v~~~Aa~aL 837 (1008)
..++=...+.-++..+-+.-..+ ...++|-.....|--+.. +|..-..+ .-++|.|-..|.+.+..||.++...|
T Consensus 252 We~iP~~i~~~ll~kI~d~~a~d-t~s~VR~svf~gl~~~l~--np~sh~~l--e~~Lpal~~~l~D~se~VRvA~vd~l 326 (1005)
T KOG1949|consen 252 WEMIPPTILIDLLKKITDELAFD-TSSDVRCSVFKGLPMILD--NPLSHPLL--EQLLPALRYSLHDNSEKVRVAFVDML 326 (1005)
T ss_pred HHHcCHHHHHHHHHHHHHHhhhc-cchheehhHhcCcHHHHc--CccchhHH--HHHHHhcchhhhccchhHHHHHHHHH
Confidence 00111111222222222211111 234677777777776666 45443333 23567777888888999999999998
Q ss_pred hhhh
Q 001833 838 ARFS 841 (1008)
Q Consensus 838 ~nLs 841 (1008)
..+-
T Consensus 327 l~ik 330 (1005)
T KOG1949|consen 327 LKIK 330 (1005)
T ss_pred HHHH
Confidence 8876
No 414
>cd08324 CARD_NOD1_CARD4 Caspase activation and recruitment domain similar to that found in NOD1. Caspase activation and recruitment domain (CARD) found in human NOD1 (CARD4) and similar proteins. NOD1 is a member of the Nod-like receptor (NLR) family, which plays a central role in the innate immune response. NLRs typically contain an N-terminal effector domain, a central nucleotide-binding domain and a C-terminal ligand-binding region of several leucine-rich repeats (LRRs). In NOD1, as well as NOD2, the N-terminal effector domain is a CARD. Nod1-CARD has been shown to interact with the CARD domain of the downstream effector RICK (RIP2, CARDIAK), a serine/threonine kinase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form hom
Probab=24.52 E-value=4.5e+02 Score=22.63 Aligned_cols=26 Identities=19% Similarity=0.188 Sum_probs=22.1
Q ss_pred hhhHHHHHHHHHhHHHHHHHHhcCCC
Q 001833 40 KESFKELAAYLERIVPVLKELNKRDL 65 (1008)
Q Consensus 40 ~~~~~~l~r~~~ll~~lleel~~~~~ 65 (1008)
|.+=..|+.+|.-..|+++.+...+.
T Consensus 4 ~~hRe~LV~rI~~v~plLD~Ll~n~~ 29 (85)
T cd08324 4 KSNRELLVTHIRNTQCLVDNLLKNDY 29 (85)
T ss_pred HHHHHHHHHHHHhhHHHHHHHhccCC
Confidence 55667899999999999999987764
No 415
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=24.52 E-value=1.1e+03 Score=27.07 Aligned_cols=77 Identities=10% Similarity=0.086 Sum_probs=53.6
Q ss_pred HhhcCcHHHHHHHhccCCHHHHHHHHHHHHHhhCCCchhHHHHhcCChHHHHHHhcccCCCCcchHHHHHHHHHHHhcc
Q 001833 539 LLEGNVLGPLLHLVSRGDIQMKKVAVKALRNLSSVPQNGLQMIKEGAVGPLVDLLLHHSSSSSSLREETATAIMHLAVS 617 (1008)
Q Consensus 539 i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~~~~~~~i~~~G~v~~Ll~ll~~~~~~~~~~~~~a~~~L~nLa~~ 617 (1008)
..+...+..|+.++.+++++.|......|.++-..-.+....+...+...+.+.+..... .......+.+++.+..+
T Consensus 129 ~i~~~fi~~Ll~l~~S~D~rER~~lk~~l~~iy~k~~~~r~~Ir~~i~~~~~~fi~e~~~--~~gI~elLeil~sii~g 205 (409)
T PF01603_consen 129 YIDQKFIKKLLELFDSPDPRERDYLKTILHRIYGKFPNLRSFIRKSINNIFYRFIYETER--HNGIAELLEILGSIING 205 (409)
T ss_dssp TS-HHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHH-TTTHHHHHHHHHHHHHHHHHTTS----STHHHHHHHHHHHHTT
T ss_pred HcCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCccc--ccCHHHHHHHHHHHHhc
Confidence 455678889999999999999999999999987533334444444466677777764432 45567777777777653
No 416
>PF00619 CARD: Caspase recruitment domain; InterPro: IPR001315 The caspase recruitment domain domain (CARD) is a homotypic protein interaction module composed of a bundle of six alpha-helices. CARD is related in sequence and structure to the death domain (DD, see IPR000488 from INTERPRO) and the death effector domain (DED, see IPR001875 from INTERPRO), which work in similar pathways and show similar interaction properties []. The CARD domain typically associates with other CARD-containing proteins, forming either dimers or trimers. CARD domains can be found in isolation, or in combination with other domains. Domains associated with CARD include: NACHT (IPR007111 from INTERPRO) (in Nal1 and Bir1), NB-ARC (IPR002182 from INTERPRO) (in Apaf-1), pyrin/dapin domains (IPR004020 from INTERPRO) (in Nal1), leucine-rich repeats () (in Nal1), WD repeats (IPR001680 from INTERPRO) (in Apaf1), Src homology domains (IPR001452 from INTERPRO), PDZ (IPR001478 from INTERPRO), RING, kinase and DD domains []. CARD-containing proteins are involved in apoptosis through their regulation of caspases that contain CARDs in their N-terminal pro-domains, including human caspases 1, 2, 9, 11 and 12 []. CARD-containing proteins are also involved in inflammation through their regulation of NF-kappaB []. The mechanisms by which CARDs activate caspases and NF-kappaB involve the assembly of multi-protein complexes, which can facilitate dimerisation or serve as scaffolds on which proteases and kinases are assembled and activated.; GO: 0005515 protein binding, 0042981 regulation of apoptosis, 0005622 intracellular; PDB: 2NSN_A 2NZ7_B 2DBD_A 4E9M_C 2B1W_A 3YGS_P 2KN6_A 3CRD_A 1DGN_A 3KAT_A ....
Probab=24.30 E-value=3.5e+02 Score=22.84 Aligned_cols=63 Identities=17% Similarity=0.180 Sum_probs=44.7
Q ss_pred chhhHHHHHHHHHhHHHHHHHHhcCCCCCcHhHHHHHHHHHHHHHHHHHHHHH-hhhhhhHHHHh
Q 001833 39 KKESFKELAAYLERIVPVLKELNKRDLSHSEGLNSAIEILNREIKGAKELTTE-CSKRNKVYLLM 102 (1008)
Q Consensus 39 ~~~~~~~l~r~~~ll~~lleel~~~~~~~~~~~~~~l~~L~~~l~~a~~Ll~~-c~~~Skl~l~~ 102 (1008)
-+++...|++.+..+.++++.+...+. .++.-..-+......-++++.|+.. ++.|++.|-.+
T Consensus 4 L~~~r~~Lv~~l~~~~~ild~L~~~~v-lt~~e~e~I~~~~t~~~k~~~LLd~l~~kg~~a~~~F 67 (85)
T PF00619_consen 4 LRKNRQELVEDLDDLDDILDHLLSRGV-LTEEEYEEIRSEPTRQDKARKLLDILKRKGPEAFDIF 67 (85)
T ss_dssp HHHTHHHHHHHSSHHHHHHHHHHHTTS-SSHHHHHHHHTSSSHHHHHHHHHHHHHHCCHHHHHHH
T ss_pred HHHhHHHHHHHhCcHHHHHHHHHHCCC-CCHHHHHHHHccCChHHHHHHHHHHHHHHCHHHHHHH
Confidence 456777888888888899999998776 4444455555555577789999886 44666665444
No 417
>KOG1410 consensus Nuclear transport receptor RanBP16 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=24.24 E-value=1.4e+03 Score=27.96 Aligned_cols=243 Identities=15% Similarity=0.132 Sum_probs=0.0
Q ss_pred HhhccCChhHHHHHHHHHHHhccCCChhHHHhhhcccchHHHHHHhcCCCCHHHHHHHHHHHhcCCCChhhHHHHHhcCC
Q 001833 686 QLCEHDNENVRANAVKLFCCLVDDGDEAIIREHVGQKCLETLVTIIQSSHNEEEIASAMGILSKLPEVPQFTQWLLDAGA 765 (1008)
Q Consensus 686 ~ll~~~~~~v~~~a~~~L~~Ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~v~~~a~~~L~nL~~~~~~~~~l~~~g~ 765 (1008)
++-.+.|+..|..|-.+|..++ ..+ ..+..---++..++.+.-+.-|..+|..+.....-.....+-..
T Consensus 13 ~LY~s~D~~~R~~AE~~L~e~s-~sp----------eclskCqlll~~gs~pYs~mlAst~L~Klvs~~t~lpl~qrldi 81 (1082)
T KOG1410|consen 13 DLYESTDPTARHRAEKALAELS-ESP----------ECLSKCQLLLERGSYPYSQMLASTCLMKLVSRKTPLPLEQRLDI 81 (1082)
T ss_pred HHHhcCCHHHHHHHHHHHHHHc-cCH----------HHHHHHHHHHHcCCCchHHHHHHHHHHHHHcCCCCCcHHHHHHH
Q ss_pred HHHHHHHhhCCCCCCCchhhHHHHHHHHHHHhcCCC-CHHHHHHHHHcCChHHHHHHhhcCChHHHHHHHHHHhhhhhcC
Q 001833 766 LPIVLNFLKNGRQNDPNRFQVVENAVGALRRFTAPT-NLEWQKRAAEAGVIPKLVQLLEYGTTLTKEHAATSLARFSKNS 844 (1008)
Q Consensus 766 l~~Lv~lL~~~~~~~~~~~~v~~~a~~aL~~L~~~~-~~~~~~~l~~~g~l~~Lv~lL~~~~~~v~~~Aa~aL~nLs~~~ 844 (1008)
-.-+++.|..+.+. -.+-+....+..+++++.-. -........--+.+.-+.+.|..++.+-..-+...|..+...-
T Consensus 82 r~Yilnylat~~Pk--~~~fvi~sLiQl~arlTK~gW~d~~k~~y~FRd~v~~~~kfl~~~~ve~~~igv~iLsqLvqem 159 (1082)
T KOG1410|consen 82 RNYILNYLATGAPK--LAPFVIQSLIQLFARLTKLGWFDQQKDEYVFRDPVDDVTKFLQMDNVEHCIIGVQILSQLVQEM 159 (1082)
T ss_pred HHHHHHHHhcCCCC--cccHHHHHHHHHHHHHHhccccccccccchhhhhHHHHHHHhccCchHHHHHHHHHHHHHHHHh
Q ss_pred CCCCCCCCCCCcccccCCCCCCcccccCcccCcccchhHhhccchHHHHHhhcCCC-----hhhhHHHHHHHHhhh-ccc
Q 001833 845 LGLSRPIPKRKGFWCFSPPPEIGCQVHGGLCGIESSFCLLEANAVRPLVRVLEDPD-----HGACEASLDALVTLI-EGE 918 (1008)
Q Consensus 845 ~~l~~~~~~~~g~~~~~~~~~~~c~vh~~~c~~~~~~~l~~~g~i~~Lv~lL~~~d-----~~v~~~al~aL~~L~-~~~ 918 (1008)
..-....|-.+ |+.+.+.=.-..|.+ +...-+.+|.+.. ...+..-+.++.+|. .-.
T Consensus 160 N~~~~~~p~tk---------------HRkias~FRD~sL~~--vf~laln~L~~~~~~nlnd~~q~~L~~~vL~L~l~Cl 222 (1082)
T KOG1410|consen 160 NQADGMDPSTK---------------HRKIASSFRDDSLFD--VFSLALNLLKDNVDLNLNDRAQLGLLMQVLKLNLNCL 222 (1082)
T ss_pred hCCCCCCcchH---------------HHHHHhhhhhhHHHH--HHHHHHHHHHHhcccCcccHhHhhHHHHHHHHHhhhc
Q ss_pred ccc--------------------hhhHHHHhcCchHHHHHHhcCCChHHHHHHHHHHHHH
Q 001833 919 RLQ--------------------NGSKVLEDANAIDRMVRFLSSPSPKLQEKALDSVERI 958 (1008)
Q Consensus 919 ~~~--------------------~~~~~i~~~~~i~~l~~ll~~~~~~l~~~a~~~L~~l 958 (1008)
.+. ..+..+.+...++...++.++-.+++.+.|+.+|.++
T Consensus 223 ~FDfiGss~DEssed~ctVQIPTsWRs~f~d~stlqlfFdly~slp~~~S~~alsclvql 282 (1082)
T KOG1410|consen 223 NFDFIGSSTDESSEDLCTVQIPTSWRSSFLDSSTLQLFFDLYHSLPPELSELALSCLVQL 282 (1082)
T ss_pred cccccccccccccccccceecCcHHHHHhcCchHHHHHHHHhccCCchhhHHHHHHHHHH
No 418
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=24.21 E-value=9.4e+02 Score=26.70 Aligned_cols=215 Identities=13% Similarity=0.077 Sum_probs=106.2
Q ss_pred cCcHHHHHHHHh-cCCHHHHHHHHHHHHHHcCChhhHHHHhhcCcHHHHHHHhccCCHHHHHHHHHHHHHhhCCCchhHH
Q 001833 501 ANYFKHLLQRLS-AGPESVKMRMATTLAEMELTDHHKASLLEGNVLGPLLHLVSRGDIQMKKVAVKALRNLSSVPQNGLQ 579 (1008)
Q Consensus 501 ~g~v~~Lv~~L~-~~~~~~~~~aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~~~~~~~ 579 (1008)
..++..+..++. ++++.....++.+|+.=...- ..-....++..+.+-+.+..+.+|+.-+.+++.+.....|...
T Consensus 21 ~~i~~~l~~~~~KE~nE~aL~~~l~al~~~~~~~---~~~~~~~~~~~~~kGl~~kk~~vR~~w~~~~~~~~~~~~~~~~ 97 (339)
T PF12074_consen 21 SKIVQGLSPLLSKESNEAALSALLSALFKHLFFL---SSELPKKVVDAFKKGLKDKKPPVRRAWLLCLGEALWESPNSDS 97 (339)
T ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHh---CcCCCHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhhccCchH
Confidence 344555556554 456666666666665421000 0011234566677777777777888888777777652222221
Q ss_pred H-HhcCChHHHHHHhcccCCCC-cc----hHHHHHHHHHHHhccccccc--c--------CCcccccccchhHHHHHHHh
Q 001833 580 M-IKEGAVGPLVDLLLHHSSSS-SS----LREETATAIMHLAVSTMYQE--S--------SQTPVTLLESDKEIFMLFSL 643 (1008)
Q Consensus 580 i-~~~G~v~~Ll~ll~~~~~~~-~~----~~~~a~~~L~nLa~~~~~~~--~--------~~~~~~~l~~~~~i~~L~~l 643 (1008)
. .-...+|.|+..+......+ +. ....|..++. +........ . ...--.++.++ ++
T Consensus 98 ~~~~~~~~~~L~~~~~~~~~~p~~~~~~~~~~~a~~~l~-~~~~~~~~~~~~~~~~~~l~~~~kps~ll~~-------kv 169 (339)
T PF12074_consen 98 LKFAEPFLPKLLQSLKEASANPLQSAQNGELVGAYVLLA-LSSWKLDKIDSKNISFWSLALDPKPSFLLSE-------KV 169 (339)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCccccccHHHHHHHHH-hccccchhhhhhhhhhhhhccCCCcchhcCH-------HH
Confidence 1 22347888888886432210 11 1112222222 111000000 0 00000112111 12
Q ss_pred hcc-CChHHHHHHHHHHHHhccCCChhhHHHHhhhcCChHHHHHhhccC--ChhHHHHHHHHHHHhccCCChhHHHhhhc
Q 001833 644 INL-TGPNVQQRILQTFNALCRSPSAGNIKTTLTQCSAIPVLVQLCEHD--NENVRANAVKLFCCLVDDGDEAIIREHVG 720 (1008)
Q Consensus 644 l~~-~~~~v~~~al~aL~~L~~~~~~~~~~~~i~e~~~i~~Lv~ll~~~--~~~v~~~a~~~L~~Ls~~~~~~~~~~~~~ 720 (1008)
... .+++...+.++++..+..+......... ....-..++.++-+. ..++|..|...+..+. ...+.. +.
T Consensus 170 yskl~~~~d~~w~~~al~~~~~~~~~~~~~~~--~~~~~~a~i~ll~s~~~~~~vR~~A~~~l~~l~-~~~~~~----l~ 242 (339)
T PF12074_consen 170 YSKLASEEDLCWLLRALEALLSDHPSELSSDK--SSAWAQAFIYLLCSSNVSWKVRRAALSALKKLY-ASNPEL----LS 242 (339)
T ss_pred HhccCCHhHHHHHHHHHHHHHhcchhhhhhhH--HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH-HhChHH----HH
Confidence 222 4566677788888877764222111111 123456778888887 7899999999999886 223222 23
Q ss_pred ccchHHHHHHhcC
Q 001833 721 QKCLETLVTIIQS 733 (1008)
Q Consensus 721 ~~~i~~Lv~lL~~ 733 (1008)
...+..+-+.+..
T Consensus 243 ~~li~~l~~~l~~ 255 (339)
T PF12074_consen 243 KSLISGLWKWLSS 255 (339)
T ss_pred HHHHHHHHHHHHh
Confidence 3445555555544
No 419
>PF08216 CTNNBL: Catenin-beta-like, Arm-motif containing nuclear; InterPro: IPR013180 This domain is found in eukaryotic proteins. A human nuclear protein with this domain (Q8WYA6 from SWISSPROT) is thought to have a role in apoptosis [].
Probab=24.12 E-value=1.1e+02 Score=27.58 Aligned_cols=42 Identities=21% Similarity=0.297 Sum_probs=34.9
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHHHhhcCChHHH
Q 001833 787 VENAVGALRRFTAPTNLEWQKRAAEAGVIPKLVQLLEYGTTLTK 830 (1008)
Q Consensus 787 ~~~a~~aL~~L~~~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~v~ 830 (1008)
....+..+..|+. .|+.-..+++.|+++.|+.+|.+.+.++.
T Consensus 63 Ld~~Ik~l~~La~--~P~LYp~lv~l~~v~sL~~LL~HeN~DIa 104 (108)
T PF08216_consen 63 LDEEIKKLSVLAT--APELYPELVELGAVPSLLGLLSHENTDIA 104 (108)
T ss_pred HHHHHHHHHHccC--ChhHHHHHHHcCCHHHHHHHHCCCCccee
Confidence 3466777888888 68999999999999999999998876654
No 420
>TIGR02605 CxxC_CxxC_SSSS putative regulatory protein, FmdB family. This model represents a region of about 50 amino acids found in a number of small proteins in a wide range of bacteria. The region begins usually with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One member of this family is has been noted as a putative regulatory protein, designated FmdB (PubMed:8841393). Most members of this family have a C-terminal region containing highly degenerate sequence, such as SSTSESTKSSGSSGSSGSSESKASGSTEKSTSSTTAAAAV in Mycobacterium tuberculosis and VAVGGSAPAPSPAPRAGGGGGGCCGGGCCG in Streptomyces avermitilis. These low complexity regions, which are not included in the model, resemble low-complexity C-terminal regions of some heterocycle-containing bacteriocin precursors.
Probab=24.09 E-value=22 Score=27.26 Aligned_cols=33 Identities=27% Similarity=0.491 Sum_probs=19.2
Q ss_pred CCccccccccccccCCceeccCcccccHHHHHHHHhcCCCCCCCcCc
Q 001833 262 PLQSFYCPITRDVMVDPVETSSGQTFERSAIEKWFSDGNNLCPLTMT 308 (1008)
Q Consensus 262 ~~~~~~cpi~~~~m~dpv~~~~g~t~~r~~i~~w~~~~~~~cp~~~~ 308 (1008)
|..+|.|+ .||++||... ..-+.....||.|+.
T Consensus 2 P~Yey~C~------------~Cg~~fe~~~--~~~~~~~~~CP~Cg~ 34 (52)
T TIGR02605 2 PIYEYRCT------------ACGHRFEVLQ--KMSDDPLATCPECGG 34 (52)
T ss_pred CCEEEEeC------------CCCCEeEEEE--ecCCCCCCCCCCCCC
Confidence 44788886 5666666410 000123457999986
No 421
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=24.01 E-value=6.3e+02 Score=27.35 Aligned_cols=71 Identities=13% Similarity=0.083 Sum_probs=52.5
Q ss_pred CHHHHHHHhhCCCCCCCchhhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHHHhh------------cCChHHHHH
Q 001833 765 ALPIVLNFLKNGRQNDPNRFQVVENAVGALRRFTAPTNLEWQKRAAEAGVIPKLVQLLE------------YGTTLTKEH 832 (1008)
Q Consensus 765 ~l~~Lv~lL~~~~~~~~~~~~v~~~a~~aL~~L~~~~~~~~~~~l~~~g~l~~Lv~lL~------------~~~~~v~~~ 832 (1008)
++|.++.++++ .++.++...+.+|.+|........-..+.+.|..+++.+.+. ..+..+-..
T Consensus 120 iiP~iL~llDD------~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ 193 (282)
T PF10521_consen 120 IIPPILNLLDD------YSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQA 193 (282)
T ss_pred HHhhHHHHhcC------CCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHH
Confidence 58999999999 789999999999999998532332234777887777655554 234467777
Q ss_pred HHHHHhhhh
Q 001833 833 AATSLARFS 841 (1008)
Q Consensus 833 Aa~aL~nLs 841 (1008)
|--+|..+.
T Consensus 194 ay~~L~~L~ 202 (282)
T PF10521_consen 194 AYPALLSLL 202 (282)
T ss_pred HHHHHHHHH
Confidence 778887775
No 422
>smart00531 TFIIE Transcription initiation factor IIE.
Probab=23.01 E-value=45 Score=32.22 Aligned_cols=37 Identities=19% Similarity=0.403 Sum_probs=24.0
Q ss_pred ccccccccccccCCceeccCcccccHHHHHHHHh-cCCCCCCCcCccCCC
Q 001833 264 QSFYCPITRDVMVDPVETSSGQTFERSAIEKWFS-DGNNLCPLTMTVLDT 312 (1008)
Q Consensus 264 ~~~~cpi~~~~m~dpv~~~~g~t~~r~~i~~w~~-~~~~~cp~~~~~l~~ 312 (1008)
..|.||- ||++|.=.......+ .|...||.|+.+|.+
T Consensus 98 ~~Y~Cp~------------C~~~y~~~ea~~~~d~~~~f~Cp~Cg~~l~~ 135 (147)
T smart00531 98 AYYKCPN------------CQSKYTFLEANQLLDMDGTFTCPRCGEELEE 135 (147)
T ss_pred cEEECcC------------CCCEeeHHHHHHhcCCCCcEECCCCCCEEEE
Confidence 5799994 566666433333322 355789999998854
No 423
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=22.24 E-value=7.6e+02 Score=24.86 Aligned_cols=70 Identities=14% Similarity=0.185 Sum_probs=46.6
Q ss_pred cHHHHHHHHhcCCHHHHHHHHHHHHHHcCC-hhhHHHHhhcCcHHHHHHHhccCCHHHHHHHHHHHHHhhC
Q 001833 503 YFKHLLQRLSAGPESVKMRMATTLAEMELT-DHHKASLLEGNVLGPLLHLVSRGDIQMKKVAVKALRNLSS 572 (1008)
Q Consensus 503 ~v~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~-~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~ 572 (1008)
.++.+.+-|++.....+..|......|-.. ...|..-.=...|.+|-..|.+.++.+...++.+|..|+.
T Consensus 39 ~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~ 109 (183)
T PF10274_consen 39 YLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVT 109 (183)
T ss_pred HHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence 345555556665555666666666655333 3333322335677778888999999999999999999964
No 424
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=22.24 E-value=2.6e+02 Score=26.72 Aligned_cols=71 Identities=17% Similarity=0.289 Sum_probs=47.4
Q ss_pred chhhhhhhhccC-cchHHHHHHHHHHHHHHhhchh-hhhhHhhcCchHH-HHHHHcC---CCHHHHHHHHHHHHHhc
Q 001833 335 ITIASMKPKLVS-TEVEEVLHCLEQLQDLCQQRDQ-HREWVILENYIPK-LIYLLGS---KNRDVRNRALIILHILV 405 (1008)
Q Consensus 335 ~~~~~~~~~l~~-~~~~~~~~al~~L~~l~~~~~~-~r~~i~~~g~i~~-L~~lL~s---~~~~~~~~Al~~L~~Ls 405 (1008)
..+..++.++.+ .++..+..||.-|..+.+.... -...+++.+++.. |+.++.. ....++...+..+...+
T Consensus 38 ~a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~L~~~i~~~~~~~~~Vk~kil~li~~W~ 114 (141)
T cd03565 38 DAVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKDVLVKLINPKNNPPTIVQEKVLALIQAWA 114 (141)
T ss_pred HHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhHHHHHHHcccCCCcHHHHHHHHHHHHHHH
Confidence 346667788874 4677788887766666654432 2445677788886 8888863 23467887777776654
No 425
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=22.17 E-value=1.6e+03 Score=27.91 Aligned_cols=343 Identities=13% Similarity=0.064 Sum_probs=0.0
Q ss_pred HHHHHHHHcCChhhHHHHhhcCcHHHHHHHh--------ccCCHHHHHHHHHHHHHhh---CCCchhHHHHhcCChHHHH
Q 001833 522 MATTLAEMELTDHHKASLLEGNVLGPLLHLV--------SRGDIQMKKVAVKALRNLS---SVPQNGLQMIKEGAVGPLV 590 (1008)
Q Consensus 522 aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL--------~~~~~~~~~~A~~aL~~L~---~~~~~~~~i~~~G~v~~Ll 590 (1008)
|+..+--++.....+..+ .|+++-+++.| +-.++...+.|+..+.++. +.+.--.-+.+.-+++.++
T Consensus 389 aal~fl~~~~sKrke~Tf--qgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~an~me~fiv~hv~ 466 (970)
T COG5656 389 AALFFLIISKSKRKEETF--QGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPAANVMEYFIVNHVI 466 (970)
T ss_pred HHHHHHHHHhcccchhhh--hhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHhh
Q ss_pred HHhcccCCCCcchHHHHHHHHHHHhccccccccCCcccccccchhHHHHHHHhhccCChHHHHHHHHHHHHhccCCChhh
Q 001833 591 DLLLHHSSSSSSLREETATAIMHLAVSTMYQESSQTPVTLLESDKEIFMLFSLINLTGPNVQQRILQTFNALCRSPSAGN 670 (1008)
Q Consensus 591 ~ll~~~~~~~~~~~~~a~~~L~nLa~~~~~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~aL~~L~~~~~~~~ 670 (1008)
..+++.. .-++..|+..+..+ ..+
T Consensus 467 P~f~s~y---gfL~Srace~is~~-----------------------------------------------------eeD 490 (970)
T COG5656 467 PAFRSNY---GFLKSRACEFISTI-----------------------------------------------------EED 490 (970)
T ss_pred HhhcCcc---cchHHHHHHHHHHH-----------------------------------------------------HHh
Q ss_pred HHHHhhhcCChHHHHHhhccCChhHHHHHHHHHHHhccCCChhHHHhhhcccchHHHHHHhcCCCCHHHHHHHHHHHhcC
Q 001833 671 IKTTLTQCSAIPVLVQLCEHDNENVRANAVKLFCCLVDDGDEAIIREHVGQKCLETLVTIIQSSHNEEEIASAMGILSKL 750 (1008)
Q Consensus 671 ~~~~i~e~~~i~~Lv~ll~~~~~~v~~~a~~~L~~Ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~v~~~a~~~L~nL 750 (1008)
..+...-..+.+.....+.+.+-.++..|+-++..+..+...+..-...-.+.++.|+.+-....-+..-..-=..+...
T Consensus 491 fkd~~ill~aye~t~ncl~nn~lpv~ieAalAlq~fi~~~q~h~k~sahVp~tmekLLsLSn~feiD~LS~vMe~fVe~f 570 (970)
T COG5656 491 FKDNGILLEAYENTHNCLKNNHLPVMIEAALALQFFIFNEQSHEKFSAHVPETMEKLLSLSNTFEIDPLSMVMESFVEYF 570 (970)
T ss_pred cccchHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHhchhhhHHHHhhhhHHHHHHHHhcccccchHHHHHHHHHHHHh
Q ss_pred CC----ChhhHHHHHhcCCHHHHHHHhhCCCCCCCchhhHHHHHHHHHHHhcCC----CCHHHHHHHHHcCChHHHHHHh
Q 001833 751 PE----VPQFTQWLLDAGALPIVLNFLKNGRQNDPNRFQVVENAVGALRRFTAP----TNLEWQKRAAEAGVIPKLVQLL 822 (1008)
Q Consensus 751 ~~----~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~v~~~a~~aL~~L~~~----~~~~~~~~l~~~g~l~~Lv~lL 822 (1008)
+. -...-..=+...++.....++..+++......+-+-.|.+.|..+..- .+....-.-.+....|.+-=.|
T Consensus 571 seELspfa~eLa~~Lv~qFlkiaq~l~ens~d~~s~vDDKqmaasGiL~T~~smiLSlen~p~vLk~le~slypvi~Fil 650 (970)
T COG5656 571 SEELSPFAPELAGSLVRQFLKIAQSLLENSSDTSSVVDDKQMAASGILRTIESMILSLENRPLVLKYLEVSLYPVISFIL 650 (970)
T ss_pred HHhhchhHHHHHHHHHHHHHHHHHHHHcCCccccccccHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHH
Q ss_pred hcCChHHHHHHHHHHhhhhhcCCCCCCCCCCCCcccccCCCCCCcccccCcccCcccchhHhhccchHHHHHhhcCCCh-
Q 001833 823 EYGTTLTKEHAATSLARFSKNSLGLSRPIPKRKGFWCFSPPPEIGCQVHGGLCGIESSFCLLEANAVRPLVRVLEDPDH- 901 (1008)
Q Consensus 823 ~~~~~~v~~~Aa~aL~nLs~~~~~l~~~~~~~~g~~~~~~~~~~~c~vh~~~c~~~~~~~l~~~g~i~~Lv~lL~~~d~- 901 (1008)
.+.-.+.-.+|+..|-+.+..+..+. +...| +.+.+.+++.+...
T Consensus 651 kn~i~dfy~Ea~dildg~tf~skeI~---pimwg-------------------------------i~Ell~~~l~~~~t~ 696 (970)
T COG5656 651 KNEISDFYQEALDILDGYTFMSKEIE---PIMWG-------------------------------IFELLLNLLIDEITA 696 (970)
T ss_pred hhhHHHHHHHHHHHHhhhhHHHHHhh---hhhhH-------------------------------HHHHHHhcccccchh
Q ss_pred hhhHHHHHHHHhhh--cccccchhhHHHHhcCchHHHHHHhcCCCh--HHHHHHHHHHHHH
Q 001833 902 GACEASLDALVTLI--EGERLQNGSKVLEDANAIDRMVRFLSSPSP--KLQEKALDSVERI 958 (1008)
Q Consensus 902 ~v~~~al~aL~~L~--~~~~~~~~~~~i~~~~~i~~l~~ll~~~~~--~l~~~a~~~L~~l 958 (1008)
...+.+..+|.|++ .+..+...-.+..-. .+.+...+.+... .-...+..+++.+
T Consensus 697 ~y~ee~~~al~nfityG~~ef~~~~~y~~i~--~eI~~~~l~sE~n~l~D~~~vc~i~e~l 755 (970)
T COG5656 697 VYSEEVADALDNFITYGKTEFMDAGIYGSIC--SEISKLCLCSEENFLEDFIGVCRIIESL 755 (970)
T ss_pred hhHHHHHHHHHHHHHhCccccccccchhHHH--HHHHHHHHcchhhhHHHHHHHHHHHHHH
No 426
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=22.01 E-value=85 Score=29.29 Aligned_cols=50 Identities=14% Similarity=0.325 Sum_probs=38.5
Q ss_pred ccccccccccccCCceec----cCcccccHHHHHHHHh--cCCCCCCCcCccCCCC
Q 001833 264 QSFYCPITRDVMVDPVET----SSGQTFERSAIEKWFS--DGNNLCPLTMTVLDTS 313 (1008)
Q Consensus 264 ~~~~cpi~~~~m~dpv~~----~~g~t~~r~~i~~w~~--~~~~~cp~~~~~l~~~ 313 (1008)
.-.-|-||+|.-.|+--+ +||.+.|-.|--.-|. .-+..||+|+....+.
T Consensus 79 ~lYeCnIC~etS~ee~FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFKss 134 (140)
T PF05290_consen 79 KLYECNICKETSAEERFLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSFKSS 134 (140)
T ss_pred CceeccCcccccchhhcCCcccccchHHHHHHHHHHHHHcccCCCCCccccccccc
Confidence 346788888888876665 6899999999888443 4578999998877643
No 427
>PF10915 DUF2709: Protein of unknown function (DUF2709); InterPro: IPR024484 Members of this family appear restricted to Chlamydiales. Their function is unknown.
Probab=21.49 E-value=72 Score=31.49 Aligned_cols=39 Identities=28% Similarity=0.529 Sum_probs=29.3
Q ss_pred ccccccccccccCCceeccCcccccHHHHHHHHhcCCCCCCCcCccCC
Q 001833 264 QSFYCPITRDVMVDPVETSSGQTFERSAIEKWFSDGNNLCPLTMTVLD 311 (1008)
Q Consensus 264 ~~~~cpi~~~~m~dpv~~~~g~t~~r~~i~~w~~~~~~~cp~~~~~l~ 311 (1008)
.-++||.|+.+|-|-+- ---..+|..|+. .||...++..
T Consensus 86 kIYICPFTGKVF~DNt~-----~nPQDAIYDWvS----kCPeN~ER~~ 124 (238)
T PF10915_consen 86 KIYICPFTGKVFGDNTH-----PNPQDAIYDWVS----KCPENTERQG 124 (238)
T ss_pred eEEEcCCcCccccCCCC-----CChHHHHHHHHh----hCCccchhcc
Confidence 56899999999998643 345789999985 4988755543
No 428
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=21.14 E-value=64 Score=34.47 Aligned_cols=44 Identities=23% Similarity=0.570 Sum_probs=31.9
Q ss_pred ccccccccccccC----CceeccCcccccHHHHHHHHhcCCCCCCCcCc
Q 001833 264 QSFYCPITRDVMV----DPVETSSGQTFERSAIEKWFSDGNNLCPLTMT 308 (1008)
Q Consensus 264 ~~~~cpi~~~~m~----dpv~~~~g~t~~r~~i~~w~~~~~~~cp~~~~ 308 (1008)
.++-|||+.+-+. +|....|||+--..+.++....+ .+||.+..
T Consensus 157 ~~~ncPic~e~l~~s~~~~~~~~CgH~~h~~cf~e~~~~~-y~CP~C~~ 204 (276)
T KOG1940|consen 157 SEFNCPICKEYLFLSFEDAGVLKCGHYMHSRCFEEMICEG-YTCPICSK 204 (276)
T ss_pred ccCCCchhHHHhccccccCCccCcccchHHHHHHHHhccC-CCCCcccc
Confidence 4567999998776 68888999996544444444445 89999955
No 429
>KOG4713 consensus Cyclin-dependent kinase 2-associated protein [Signal transduction mechanisms; Cell cycle control, cell division, chromosome partitioning]
Probab=21.12 E-value=1.6e+02 Score=28.66 Aligned_cols=45 Identities=31% Similarity=0.431 Sum_probs=32.9
Q ss_pred HHHhHHHHHHHHhcCCCCCcHhHHHHHHHHHHHHHHHHHHHHHhh
Q 001833 49 YLERIVPVLKELNKRDLSHSEGLNSAIEILNREIKGAKELTTECS 93 (1008)
Q Consensus 49 ~~~ll~~lleel~~~~~~~~~~~~~~l~~L~~~l~~a~~Ll~~c~ 93 (1008)
+..-|..++||+...-.+--.....+.+.|..-+..||.|++.|-
T Consensus 136 kY~~LL~vieEmgkeirpTyagsks~~ERLKr~I~hAR~lVRecl 180 (189)
T KOG4713|consen 136 KYADLLSVIEEMGKEIRPTYAGSKSAMERLKRDIIHARLLVRECL 180 (189)
T ss_pred HHHHHHHHHHHHhcccCccccccccHHHHHHhhHHHHHHHHHHHH
Confidence 334666788999643222223446788999999999999999995
No 430
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=21.00 E-value=6.9e+02 Score=23.34 Aligned_cols=63 Identities=22% Similarity=0.313 Sum_probs=39.3
Q ss_pred chHHHHHHhcCCCC---HHHHHHHHHHHhcCCCChhhHHHHHhcCCHHHHHHHhhCCCCCCCchhhHHHHHHHHH
Q 001833 723 CLETLVTIIQSSHN---EEEIASAMGILSKLPEVPQFTQWLLDAGALPIVLNFLKNGRQNDPNRFQVVENAVGAL 794 (1008)
Q Consensus 723 ~i~~Lv~lL~~~~~---~~v~~~a~~~L~nL~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~v~~~a~~aL 794 (1008)
.+..+.+++..... .+....++.++...... -....+.+.+.++.+.++|.+ +.+++.|+.+|
T Consensus 83 i~~~l~~~l~~~~~~~~~~~~~~~L~~l~s~i~~-~~~~~i~~~~~l~~~~~~l~~--------~~~~~~A~~cl 148 (148)
T PF08389_consen 83 ILEILSQILSQSSSEANEELVKAALKCLKSWISW-IPIELIINSNLLNLIFQLLQS--------PELREAAAECL 148 (148)
T ss_dssp HHHHHHHHHHHHCHCCHHHHHHHHHHHHHHHTTT-S-HHHHHSSSHHHHHHHHTTS--------CCCHHHHHHHH
T ss_pred HHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHh-CCHHHhccHHHHHHHHHHcCC--------HHHHHHHHHhC
Confidence 34444444444322 56777888888877661 123345567789999999966 23477777765
No 431
>PF08216 CTNNBL: Catenin-beta-like, Arm-motif containing nuclear; InterPro: IPR013180 This domain is found in eukaryotic proteins. A human nuclear protein with this domain (Q8WYA6 from SWISSPROT) is thought to have a role in apoptosis [].
Probab=20.86 E-value=1.3e+02 Score=27.18 Aligned_cols=43 Identities=14% Similarity=0.103 Sum_probs=36.1
Q ss_pred HHHHHHHHHHhhcCCcccHHHHHhcCcHHHHHHHHhcCCHHHH
Q 001833 477 ASRDAQELLENLSFSDDNVVQMAKANYFKHLLQRLSAGPESVK 519 (1008)
Q Consensus 477 ~~~~a~~aL~~Ls~~~~n~~~i~~~g~v~~Lv~~L~~~~~~~~ 519 (1008)
-....+..|..|+..++--..+++.|+++.|+.+|.+.+.++.
T Consensus 62 dLd~~Ik~l~~La~~P~LYp~lv~l~~v~sL~~LL~HeN~DIa 104 (108)
T PF08216_consen 62 DLDEEIKKLSVLATAPELYPELVELGAVPSLLGLLSHENTDIA 104 (108)
T ss_pred HHHHHHHHHHHccCChhHHHHHHHcCCHHHHHHHHCCCCccee
Confidence 3456677888889999989999999999999999998876543
No 432
>PF06012 DUF908: Domain of Unknown Function (DUF908); InterPro: IPR010309 This is a domain of unknown function found at the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately N-terminal to another domain of unknown function: IPR010314 from INTERPRO.
Probab=20.79 E-value=4.3e+02 Score=29.40 Aligned_cols=64 Identities=17% Similarity=0.338 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHcCChhhHHHHhhcC--cHHHHHHHhccC---CHHHHHHHHHHHHHhhCCCchhHHHH
Q 001833 518 VKMRMATTLAEMELTDHHKASLLEGN--VLGPLLHLVSRG---DIQMKKVAVKALRNLSSVPQNGLQMI 581 (1008)
Q Consensus 518 ~~~~aa~~L~~Ls~~~~~k~~i~~~g--~i~~Lv~lL~~~---~~~~~~~A~~aL~~L~~~~~~~~~i~ 581 (1008)
+|-.|...+..+......-..+...+ ++..|+++++.. ...++..|+.+|..++.+..-...++
T Consensus 238 iRllAi~~l~~~~~~~~~~~~~l~~dp~l~~eL~eLi~~~~~v~~~i~~~Al~~L~ai~~~~~~~~~V~ 306 (329)
T PF06012_consen 238 IRLLAIANLVYIHPESQFSSKLLEQDPELVNELVELISPEEKVPMDIQTAALRALEAISHKRPRCSDVL 306 (329)
T ss_pred HHHHHHHHHHhhCCCHHHHHHHHhcChHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHhccccHHHHH
Confidence 45566666666666666666666655 999999999865 45789999999999997544333333
No 433
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=20.52 E-value=63 Score=30.36 Aligned_cols=45 Identities=22% Similarity=0.357 Sum_probs=32.8
Q ss_pred cccccccccccCC--cee-ccCccc------ccHHHHHHHHhcCCCCCCCcCccC
Q 001833 265 SFYCPITRDVMVD--PVE-TSSGQT------FERSAIEKWFSDGNNLCPLTMTVL 310 (1008)
Q Consensus 265 ~~~cpi~~~~m~d--pv~-~~~g~t------~~r~~i~~w~~~~~~~cp~~~~~l 310 (1008)
..-|.||.+-..+ -|+ +.+|-| |+..|+++|- +....+|.-+..-
T Consensus 26 ~~EC~IC~~~I~~~~GvV~vt~~g~lnLEkmfc~~C~~rw~-~~~~rDPfnR~I~ 79 (134)
T PF05883_consen 26 TVECQICFDRIDNNDGVVYVTDGGTLNLEKMFCADCDKRWR-RERNRDPFNRNIK 79 (134)
T ss_pred CeeehhhhhhhhcCCCEEEEecCCeehHHHHHHHHHHHHHH-hhccCCCcccceE
Confidence 5679999998887 544 466755 5779999995 4566788876543
No 434
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=20.49 E-value=4.5e+02 Score=24.65 Aligned_cols=104 Identities=16% Similarity=0.204 Sum_probs=58.1
Q ss_pred CcHHHHHHHhccChhHHHHHHHHHHHhcc--------------CchhhHHhhc-ccchHHHHHHHhcCCC----hHHHHH
Q 001833 420 DAVESIVRSLGRRIEERKLAVALLLELST--------------CNTLRDQIGD-VQGCILLLVTMASSDD----NQASRD 480 (1008)
Q Consensus 420 g~i~~Lv~~L~~~~~~~~~A~~~L~~Ls~--------------~~~~~~~i~~-~~g~i~~Lv~lL~~~~----~~~~~~ 480 (1008)
..++.++..+..+.........+|..+.. ..+.+..+.. .+..+..+.+.+.... ......
T Consensus 26 ~~l~~l~~~~~~~~~~~~~~L~iL~~l~eEi~~~~~~~~~~~r~~~l~~~l~~~~~~i~~~l~~~l~~~~~~~~~~~~~~ 105 (148)
T PF08389_consen 26 DFLEDLLQLLQSSPQHLELVLRILRILPEEITDFRRSSLSQERRRELKDALRSNSPDILEILSQILSQSSSEANEELVKA 105 (148)
T ss_dssp THHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTSHCCHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHCCHHHHHHH
T ss_pred hHHHHHHHHhccchhHHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHH
Confidence 45566666665554444455555554421 0112222221 1234555555555322 777888
Q ss_pred HHHHHHhhcCCcccHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHH
Q 001833 481 AQELLENLSFSDDNVVQMAKANYFKHLLQRLSAGPESVKMRMATTL 526 (1008)
Q Consensus 481 a~~aL~~Ls~~~~n~~~i~~~g~v~~Lv~~L~~~~~~~~~~aa~~L 526 (1008)
++.++..... --....+.+.+.++.+..+|..+ +.+..|+.+|
T Consensus 106 ~L~~l~s~i~-~~~~~~i~~~~~l~~~~~~l~~~--~~~~~A~~cl 148 (148)
T PF08389_consen 106 ALKCLKSWIS-WIPIELIINSNLLNLIFQLLQSP--ELREAAAECL 148 (148)
T ss_dssp HHHHHHHHTT-TS-HHHHHSSSHHHHHHHHTTSC--CCHHHHHHHH
T ss_pred HHHHHHHHHH-hCCHHHhccHHHHHHHHHHcCCH--HHHHHHHHhC
Confidence 8888888766 33445566677899999988544 4566666554
No 435
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=20.06 E-value=3.5e+02 Score=30.35 Aligned_cols=70 Identities=14% Similarity=0.198 Sum_probs=54.6
Q ss_pred cchHHHHHhhcCCChhhhHHHHHHHHhhh-cccccchhhHHHHhcCchHHHHHHhc-CCChHHHHHHHHHHHHH
Q 001833 887 NAVRPLVRVLEDPDHGACEASLDALVTLI-EGERLQNGSKVLEDANAIDRMVRFLS-SPSPKLQEKALDSVERI 958 (1008)
Q Consensus 887 g~i~~Lv~lL~~~d~~v~~~al~aL~~L~-~~~~~~~~~~~i~~~~~i~~l~~ll~-~~~~~l~~~a~~~L~~l 958 (1008)
.+++.+..-|.+.|+.|...|+..|..+. +-. ...+..+...+....+..++. +..+.|.++-..++.+.
T Consensus 45 d~lk~i~KRln~~dphV~L~AlTLlda~~~NCg--~~~r~EVsSr~F~~el~al~~~~~h~kV~~k~~~lv~eW 116 (462)
T KOG2199|consen 45 DCLKAIMKRLNHKDPHVVLQALTLLDACVANCG--KRFRLEVSSRDFTTELRALIESKAHPKVCEKMRDLVKEW 116 (462)
T ss_pred HHHHHHHHHhcCCCcchHHHHHHHHHHHHHhcc--hHHHHHHhhhhHHHHHHHHHhhcccHHHHHHHHHHHHHH
Confidence 46889999999999999988888888887 222 256677777778888888887 67788888888777443
Done!