Query 001834
Match_columns 1008
No_of_seqs 303 out of 2387
Neff 7.6
Searched_HMMs 29240
Date Tue Mar 26 16:07:59 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/001834.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1131-1134//hhsearch_pdb/001834hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mwy_W Chromo domain-containin 1.0 1 1 680.9 32.0 486 266-1007 228-731 (800)
2 1z3i_X Similar to RAD54-like; 1.0 1 1 678.0 35.5 500 265-1008 47-570 (644)
3 1z63_A Helicase of the SNF2/RA 1.0 1 1 625.9 36.0 464 267-1008 31-495 (500)
4 3dmq_A RNA polymerase-associat 1.0 1 1 457.9 28.7 427 271-983 150-634 (968)
5 1wp9_A ATP-dependent RNA helic 1.0 1 1 378.4 28.4 465 272-982 7-493 (494)
6 1z5z_A Helicase of the SNF2/RA 1.0 1 1 346.7 22.6 255 600-1008 11-266 (271)
7 2fwr_A DNA repair protein RAD2 1.0 1 1 337.3 16.5 379 271-981 90-471 (472)
8 4a2w_A RIG-I, retinoic acid in 1.0 1 1 324.1 26.0 479 272-987 246-771 (936)
9 4a2q_A RIG-I, retinoic acid in 1.0 1 1 316.1 27.5 475 272-987 246-771 (797)
10 4a2p_A RIG-I, retinoic acid in 1.0 1 1 312.1 22.9 485 272-1003 5-540 (556)
No 1
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=680.90 Aligned_cols=486 Identities=27% Similarity=0.437 Sum_probs=393.1
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCHHHHHHHHHHHHCCCCCCCHHHHCCCCCCCCCCCCCC
Q ss_conf 89874322354102999999998200587766760113889825899999998400112231011114432123667888
Q 001834 266 LPDGLLSVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLDDD 345 (1008)
Q Consensus 266 ~P~~~~~~~LrpyQ~~av~wml~~e~~~~~~~GGILADemGLGKTiqaIali~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (1008)
.|+.....+|||||++|+.||+..... ..||||||+||||||+|+|++|......
T Consensus 228 ~p~~~~~~~Lr~yQ~egv~~l~~~~~~---~~~~ILademGlGKT~~ai~~i~~l~~~---------------------- 282 (800)
T 3mwy_W 228 QPPFIKGGELRDFQLTGINWMAFLWSK---GDNGILADEMGLGKTVQTVAFISWLIFA---------------------- 282 (800)
T ss_dssp CCTTCCSSCCCTHHHHHHHHHHHHHTT---TCCEEECCCTTSSTTHHHHHHHHHHHHH----------------------
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHC---CCCEEEEECCCCCHHHHHHHHHHHHHHH----------------------
T ss_conf 998657997589999999999998513---8998998278753299999999999986----------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCC
Q ss_conf 88887664322236988999998766665433478889985599918235999999999876999981899983899888
Q 001834 346 DDNGNAGLDKVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTK 425 (1008)
Q Consensus 346 ~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tLIV~P~sLl~qW~~Ei~k~~~~~~~l~v~vy~g~~r~~ 425 (1008)
....+++|||||.+++.||.+||.+|++ .+++.+|+|..+.+
T Consensus 283 -----------------------------------~~~~~~~LIV~P~sll~qW~~E~~~~~p---~~~v~~~~g~~~~r 324 (800)
T 3mwy_W 283 -----------------------------------RRQNGPHIIVVPLSTMPAWLDTFEKWAP---DLNCICYMGNQKSR 324 (800)
T ss_dssp -----------------------------------HSCCSCEEEECCTTTHHHHHHHHHHHST---TCCEEECCCSSHHH
T ss_pred -----------------------------------CCCCCCEEEEECCHHHHHHHHHHHHHCC---CCEEEEEECCHHHH
T ss_conf -----------------------------------0779988999880389999999999779---96499982777778
Q ss_pred C--------------CCCCCCCCEEEECHHHHHCCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 9--------------10137874999650233102799999864666320276567661022322210122111135678
Q 001834 426 D--------------PVELAKYDVVLTTYSIVTNEVPKQPSVDEEEADEKNGETYGLSSEFSVNKKRKKISNVSKRGKKG 491 (1008)
Q Consensus 426 ~--------------~~~l~~~dVVItTY~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~k~~~~~~~~~k~~ 491 (1008)
. ......++|+||||+++.++.
T Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~dvvitTy~~l~~~~-------------------------------------------- 360 (800)
T 3mwy_W 325 DTIREYEFYTNPRAKGKKTMKFNVLLTTYEYILKDR-------------------------------------------- 360 (800)
T ss_dssp HHHHHHHSCSCC-----CCCCCSEEEECTTHHHHTH--------------------------------------------
T ss_pred HHHHHHHHHCCCCCCCCCCCCCCEEEECHHHHHHHH--------------------------------------------
T ss_conf 898887762263001344566788990699998649--------------------------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCCH
Q ss_conf 88887777655888863210209999157534892016999998600473799963588798557998999880698411
Q 001834 492 KKGNVNSSIDYGCGPLAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRFLKYDPYAV 571 (1008)
Q Consensus 492 ~~~~~~~~~~~~~~~L~~~~w~rVIiDEAH~iKN~~s~~~kal~~L~a~~rllLTGTPi~N~l~DL~sll~fL~p~~~~~ 571 (1008)
..+..+.|.+||+||||++||..++.++++..+++.+||+|||||++|++.|||++++||.|+.|..
T Consensus 361 -------------~~l~~~~w~~vIvDEaH~lkn~~s~~~~~l~~l~~~~rl~LTgTPiqN~l~el~~ll~fL~p~~~~~ 427 (800)
T 3mwy_W 361 -------------AELGSIKWQFMAVDEAHRLKNAESSLYESLNSFKVANRMLITGTPLQNNIKELAALVNFLMPGRFTI 427 (800)
T ss_dssp -------------HHHHTSEEEEEEETTGGGGCCSSSHHHHHHTTSEEEEEEEECSCCCSSCSHHHHHHHHHHCSCCC--
T ss_pred -------------HHHHCCCCCEEEHHHHHHHCCCHHHHHHHHHHHHHCCEEEEECCCCCCCHHHHHHHHHHHCCCCCCC
T ss_conf -------------9983377325641344441471019999999752243897227857799999999999858663674
Q ss_pred HHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 59999770367666865678999999988663300365457976436999727899932999899999999999999999
Q 001834 572 YKSFYSTIKIPISRNSLHGYKKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEWAFYKKLESDSLKKFK 651 (1008)
Q Consensus 572 ~~~F~~~~~~pi~~~~~~~~~~L~~~L~~~~lRRtk~~v~~g~p~i~LP~k~~~~v~v~ls~~er~~Y~~l~~~~~~~~~ 651 (1008)
...|..... ..........|+.+++++++||++.++.. .||++.+.++.|+|++.|+++|..+.......+.
T Consensus 428 ~~~~~~~~~---~~~~~~~~~~L~~~l~p~~lRR~k~dv~~-----~LP~k~~~~v~v~ls~~q~~~Y~~i~~~~~~~l~ 499 (800)
T 3mwy_W 428 DQEIDFENQ---DEEQEEYIHDLHRRIQPFILRRLKKDVEK-----SLPSKTERILRVELSDVQTEYYKNILTKNYSALT 499 (800)
T ss_dssp -------CC---TTHHHHHHHHHHHTTGGGEEECCGGGGTT-----TSCCEEEEEEEECCCHHHHHHHHHHHHHCCC---
T ss_pred HHHHCCCCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----CCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHH
T ss_conf 344232223---14689999999999757775320876643-----1688279999707999999999999999999986
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf 98620877500899999999987530622111123445321002787403993799999972011344233458999996
Q 001834 652 AFADAGTVNQNYANILLMLLRLRQACDHPLLVKEYDFDSVGKISGEMAKRLPRDMLIDLLSRLETSSAICCVCSDPPEDS 731 (1008)
Q Consensus 652 ~~~~~g~~~~~~~~il~~LlrLRq~c~hP~l~~~~~~~~~~~~~~e~~~~l~~~~~~~l~~~le~~~~~C~ic~d~~~~~ 731 (1008)
.. .......++..+++||++|+||.++............. ......
T Consensus 500 ~~-----~~~~~~~~l~~l~~Lrk~~~hp~l~~~~~~~~~~~~~~---~~~~~~-------------------------- 545 (800)
T 3mwy_W 500 AG-----AKGGHFSLLNIMNELKKASNHPYLFDNAEERVLQKFGD---GKMTRE-------------------------- 545 (800)
T ss_dssp ------------CTHHHHHHHHHHHHHCGGGSSSHHHHHCCCC-------CCSH--------------------------
T ss_pred HC-----CCCCHHHHHHHHHHHHHHHCCHHHHCCHHHHHHHHCCC---CCCCHH--------------------------
T ss_conf 10-----35454469999999998735865423557899886156---655577--------------------------
Q ss_pred CCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 00346952304444321028999999861101236650200101023557999999999943444687676554135999
Q 001834 732 VVTMCGHVFCYQCASEYITGDDNMCPAPRCKEQLGADVVFSKTTLKNCVSDDGGGSPTDSPFADKSGILDNEYISSKIRT 811 (1008)
Q Consensus 732 v~~~cgh~fc~~ci~~~~~~~~~~cp~~~c~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SsKl~~ 811 (1008)
.. .......|+|+..
T Consensus 546 -----------~~------------------------------------------------------~~~l~~~s~K~~~ 560 (800)
T 3mwy_W 546 -----------NV------------------------------------------------------LRGLIMSSGKMVL 560 (800)
T ss_dssp -----------HH------------------------------------------------------HHHHHHTCHHHHH
T ss_pred -----------HH------------------------------------------------------HHHHHHCCHHHHH
T ss_conf -----------88------------------------------------------------------8876642769999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHCCCEEEEECCCCCHHHH
Q ss_conf 99999863101465523555201268898765578999999629999052778999999987559708996078897899
Q 001834 812 VLDILHTQCELNTKCSIVEIHDLAGSNGSSAVHSKSPIEGPIKSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPAR 891 (1008)
Q Consensus 812 l~elL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvIIFsqft~~ld~L~~~L~~~gi~~~~l~Gs~s~~~R 891 (1008)
+.++|..+...+. |+||||+|+.++++|+..|...|+.+.+++|+++..+|
T Consensus 561 L~~lL~~~~~~g~-----------------------------kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR 611 (800)
T 3mwy_W 561 LDQLLTRLKKDGH-----------------------------RVLIFSQMVRMLDILGDYLSIKGINFQRLDGTVPSAQR 611 (800)
T ss_dssp HHHHHHHHTTTTC-----------------------------CEEEEESCHHHHHHHHHHHHHHTCCCEEESTTSCHHHH
T ss_pred HHHHHHHHHHCCC-----------------------------EEEEEECHHHHHHHHHHHHHHCCCCEEEEECCCCHHHH
T ss_conf 9999999752798-----------------------------18999635999999999998679978999699999999
Q ss_pred HHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCCEEEEEEEECCCHHHHHH
Q ss_conf 99999751696750899983378755443456798999569999782569978565139834299999984899999999
Q 001834 892 DRAVKDFNTDREQITVMLMSLKAGNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVEDRIL 971 (1008)
Q Consensus 892 ~~~i~~F~~~~~~~~VLLiSlkagg~GLNL~~A~~VI~~Dp~WNp~~e~QAigRv~RiGQ~k~V~V~rli~~dTiEe~I~ 971 (1008)
+++++.|+.++....|||+|+++||+||||+.|++||+||++|||..+.||+||+||+||+++|+||+|++++|+|++|+
T Consensus 612 ~~~i~~F~~~~~~~~v~LlSt~agg~GlNL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vyrlv~~~TiEe~i~ 691 (800)
T 3mwy_W 612 RISIDHFNSPDSNDFVFLLSTRAGGLGINLMTADTVVIFDSDWNPQADLQAMARAHRIGQKNHVMVYRLVSKDTVEEEVL 691 (800)
T ss_dssp HHHHHTTSSTTCSCCCEEEEHHHHTTTCCCTTCCEEEESSCCSCSHHHHHHHTTTSCSSCCSCEEEEEEEETTSHHHHHH
T ss_pred HHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCEEEEEEEECCCCHHHHHH
T ss_conf 99999960899982599974544567877601636899468788116899999988558986379999861998999999
Q ss_pred HHHHHHHHHHHHHHCCCCCCC----CCCCCCHHHHHHHHC
Q ss_conf 999999999997516888998----666789999996423
Q 001834 972 KLQDDKRKMVASAFGEDQGGG----TASRLTVEDLRYLFM 1007 (1008)
Q Consensus 972 ~lq~~K~~l~~~~~g~~~~~~----~~~~l~~edl~~Lf~ 1007 (1008)
+++..|..+...+++.....+ ....++.+||..|+.
T Consensus 692 ~~~~~K~~l~~~vi~~~~~~~~~~~~~~~~~~~el~~ll~ 731 (800)
T 3mwy_W 692 ERARKKMILEYAIISLGVTDGNKYTKKNEPNAGELSAILK 731 (800)
T ss_dssp HHHHHHTTSCC----------------CCCCHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHH
T ss_conf 9999988899999703756653211234789999999997
No 2
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=1.00 E-value=1 Score=677.99 Aligned_cols=500 Identities=26% Similarity=0.370 Sum_probs=396.3
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHCCC--CCCCCCEEECCCCCCHHHHHHHHHHHHCCCCCCCHHHHCCCCCCCCCCC
Q ss_conf 78987432235410299999999820058--7766760113889825899999998400112231011114432123667
Q 001834 265 TLPDGLLSVNLLKHQKIALAWMLQKETRS--LHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNL 342 (1008)
Q Consensus 265 ~~P~~~~~~~LrpyQ~~av~wml~~e~~~--~~~~GGILADemGLGKTiqaIali~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (1008)
.+++. +...|||||++|+.||+...... ....||||||+||||||+|+|++|.......
T Consensus 47 ~~~p~-l~~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~ILad~mGlGKT~~~i~~i~~l~~~~------------------ 107 (644)
T 1z3i_X 47 VVDPV-LSKVLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQS------------------ 107 (644)
T ss_dssp ECCHH-HHTTCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHHHCC------------------
T ss_pred EECHH-HHHCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHC------------------
T ss_conf 51856-40035199999999999842335445888759610787429999999999999748------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCHHHHHHHHHHHHHHCCCCCCEEEEEEECCC
Q ss_conf 88888887664322236988999998766665433478889985599918235999999999876999981899983899
Q 001834 343 DDDDDNGNAGLDKVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPASVLRQWARELEDKVPDKAALSVLIYHGGS 422 (1008)
Q Consensus 343 ~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tLIV~P~sLl~qW~~Ei~k~~~~~~~l~v~vy~g~~ 422 (1008)
.......+++|||||.+++.||.+||.+|++. .+.++.++++.
T Consensus 108 -----------------------------------~~~~p~~~~~LiV~P~sll~qW~~E~~~~~~~--~~~~~~~~~g~ 150 (644)
T 1z3i_X 108 -----------------------------------PDCKPEIDKVIVVSPSSLVRNWYNEVGKWLGG--RVQPVAIDGGS 150 (644)
T ss_dssp -----------------------------------TTSSCSCSCEEEEECHHHHHHHHHHHHHHHGG--GCCEEEECSSC
T ss_pred -----------------------------------CCCCCCCCCEEEEECHHHHHHHHHHHHHHCCC--CEEEEEEECCC
T ss_conf -----------------------------------66567778579996589988799999997588--72599980898
Q ss_pred CCCCC----------CCCCCCCEEEECHHHHHCCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 88891----------01378749996502331027999998646663202765676610223222101221111356788
Q 001834 423 RTKDP----------VELAKYDVVLTTYSIVTNEVPKQPSVDEEEADEKNGETYGLSSEFSVNKKRKKISNVSKRGKKGK 492 (1008)
Q Consensus 423 r~~~~----------~~l~~~dVVItTY~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~k~~~~~~~~~k~~~ 492 (1008)
+.... .....++|+|+||+++..+..
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~~-------------------------------------------- 186 (644)
T 1z3i_X 151 KDEIDSKLVNFISQQGMRIPTPILIISYETFRLHAE-------------------------------------------- 186 (644)
T ss_dssp HHHHHHHHHHHHCCCSSCCSCCEEEEEHHHHHHHTT--------------------------------------------
T ss_pred HHHHHHHHHHHHHHCCCCCCCCEEEEEHHHHHHHHH--------------------------------------------
T ss_conf 899999999998733777787579963899876578--------------------------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCCHH
Q ss_conf 88877776558888632102099991575348920169999986004737999635887985579989998806984115
Q 001834 493 KGNVNSSIDYGCGPLAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRFLKYDPYAVY 572 (1008)
Q Consensus 493 ~~~~~~~~~~~~~~L~~~~w~rVIiDEAH~iKN~~s~~~kal~~L~a~~rllLTGTPi~N~l~DL~sll~fL~p~~~~~~ 572 (1008)
.+....|++||+||||++||..++.++++..+++++||+|||||++|++.|||++++||.|++++++
T Consensus 187 -------------~l~~~~~~~vI~DEaH~ikn~~~~~~~al~~l~~~~rl~LTgTPiqN~l~El~sll~fl~p~~l~~~ 253 (644)
T 1z3i_X 187 -------------VLHKGKVGLVICDEGHRLKNSDNQTYLALNSMNAQRRVLISGTPIQNDLLEYFSLVHFVNSGILGTA 253 (644)
T ss_dssp -------------TTTTSCCCEEEETTGGGCCTTCHHHHHHHHHHCCSEEEEECSSCSGGGGGGCHHHHHHHHHHHHCCH
T ss_pred -------------HHHCCCCCEEEEECCEECCCHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCCCH
T ss_conf -------------7504886579987862247804599999985556737998467345889999999986188768999
Q ss_pred HHHHHHCCCCCCCCC------------HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEECCCHHHHHHHH
Q ss_conf 999977036766686------------56789999999886633003654579764369997278999329998999999
Q 001834 573 KSFYSTIKIPISRNS------------LHGYKKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEWAFYK 640 (1008)
Q Consensus 573 ~~F~~~~~~pi~~~~------------~~~~~~L~~~L~~~~lRRtk~~v~~g~p~i~LP~k~~~~v~v~ls~~er~~Y~ 640 (1008)
..|...|..|+.+.. ......|+.++.++++||++..+.. .||++.+.++.|+|++.|+++|.
T Consensus 254 ~~F~~~f~~pi~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~lRR~k~~v~~-----~LP~k~~~~v~~~ls~~q~~lY~ 328 (644)
T 1z3i_X 254 QEFKKRFEIPILKGRDADASDKDRAAGEQKLQELISIVNRCLIRRTSDILSK-----YLPVKIEQVVCCNLTPLQKELYK 328 (644)
T ss_dssp HHHHHHTHHHHHHHHSTTCCSHHHHHHHHHHHHHHHHHHHHEECCCGGGGGG-----TSCCEEEEEEEECCCHHHHHHHH
T ss_pred HHHHHHHCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HCCCCEEEEEEECCCHHHHHHHH
T ss_conf 9999863261541677677888999999999999999889998710876764-----27983699998379989999999
Q ss_pred HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHCCCHHHHHHHHHHCCCCCCC
Q ss_conf 99999999999986208775008999999999875306221111234453210027874039937999999720113442
Q 001834 641 KLESDSLKKFKAFADAGTVNQNYANILLMLLRLRQACDHPLLVKEYDFDSVGKISGEMAKRLPRDMLIDLLSRLETSSAI 720 (1008)
Q Consensus 641 ~l~~~~~~~~~~~~~~g~~~~~~~~il~~LlrLRq~c~hP~l~~~~~~~~~~~~~~e~~~~l~~~~~~~l~~~le~~~~~ 720 (1008)
.+....... ...........++..+++||++|+||.++....... -+ ....
T Consensus 329 ~~~~~~~~~-----~~~~~g~~~~~~l~~l~~Lrk~c~hp~l~~~~~~~~-----------------------~~-~~~~ 379 (644)
T 1z3i_X 329 LFLKQAKPV-----ESLQTGKISVSSLSSITSLKKLCNHPALIYEKCLTG-----------------------EE-GFDG 379 (644)
T ss_dssp HHHHHHCGG-----GSSCTTCCCHHHHHHHHHHHHHHHCTHHHHHHHHHT-----------------------CT-TCTT
T ss_pred HHHHHHHHH-----HHHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHCC-----------------------CC-HHHH
T ss_conf 999989999-----987627621459999999999957999888887415-----------------------40-0355
Q ss_pred CCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 33458999996003469523044443210289999998611012366502001010235579999999999434446876
Q 001834 721 CCVCSDPPEDSVVTMCGHVFCYQCASEYITGDDNMCPAPRCKEQLGADVVFSKTTLKNCVSDDGGGSPTDSPFADKSGIL 800 (1008)
Q Consensus 721 C~ic~d~~~~~v~~~cgh~fc~~ci~~~~~~~~~~cp~~~c~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 800 (1008)
++. ..| .. .....
T Consensus 380 -----------------------~~~--------~~~---------~~---------------------------~~~~~ 392 (644)
T 1z3i_X 380 -----------------------ALD--------LFP---------QN---------------------------YSTKA 392 (644)
T ss_dssp -----------------------GGG--------TSC---------SS---------------------------CCSSS
T ss_pred -----------------------HHH--------HCC---------CC---------------------------CCCCC
T ss_conf -----------------------776--------454---------21---------------------------11000
Q ss_pred CCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHCCCEEE
Q ss_conf 76554135999999998631014655235552012688987655789999996299990527789999999875597089
Q 001834 801 DNEYISSKIRTVLDILHTQCELNTKCSIVEIHDLAGSNGSSAVHSKSPIEGPIKSIVFSQWTRMLDLVENSLNQHCIQYR 880 (1008)
Q Consensus 801 ~~~~~SsKl~~l~elL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvIIFsqft~~ld~L~~~L~~~gi~~~ 880 (1008)
.....|+|+..+..++....... ++|+||||+|+.++++|+..|...|+.+.
T Consensus 393 ~~~~~s~K~~~l~~ll~~~~~~~----------------------------~~k~lIFs~~~~~~~~l~~~l~~~g~~~~ 444 (644)
T 1z3i_X 393 VEPQLSGKMLVLDYILAMTRTTT----------------------------SDKVVLVSNYTQTLDLFEKLCRNRRYLYV 444 (644)
T ss_dssp CCGGGSHHHHHHHHHHHHHHHHC----------------------------CCEEEEEESCHHHHHHHHHHHHHHTCCEE
T ss_pred CCCCCCHHHHHHHHHHHHHHHCC----------------------------CCEEEEEECCHHHHHHHHHHHHHCCCCEE
T ss_conf 57011748999999999986469----------------------------98799998059999999999997799789
Q ss_pred EECCCCCHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCCEEEEEE
Q ss_conf 96078897899999997516967508999833787554434567989995699997825699785651398342999999
Q 001834 881 RLDGTMSLPARDRAVKDFNTDREQITVMLMSLKAGNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRL 960 (1008)
Q Consensus 881 ~l~Gs~s~~~R~~~i~~F~~~~~~~~VLLiSlkagg~GLNL~~A~~VI~~Dp~WNp~~e~QAigRv~RiGQ~k~V~V~rl 960 (1008)
+++|+++.++|++++++|++++....|+|+|+++||+||||+.|++||+||+||||+.+.||+||+||+||+++|+||+|
T Consensus 445 ~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~g~Glnl~~a~~Vi~~d~~wnp~~~~Qa~gR~~R~Gq~~~v~v~~l 524 (644)
T 1z3i_X 445 RLDGTMSIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRL 524 (644)
T ss_dssp EECSSCCHHHHHHHHHHHHSTTCCCCEEEEEGGGSCTTCCCTTEEEEEECSCCSSHHHHHHHHTTSSSTTCCSCEEEEEE
T ss_pred EEECCCCHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCCEEEEEE
T ss_conf 98399999999999999639999967999844556678465238989997999981379999884032289872699998
Q ss_pred EECCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCC
Q ss_conf 848999999999999999999975168889986667899999964239
Q 001834 961 TIRDTVEDRILKLQDDKRKMVASAFGEDQGGGTASRLTVEDLRYLFMV 1008 (1008)
Q Consensus 961 i~~dTiEe~I~~lq~~K~~l~~~~~g~~~~~~~~~~l~~edl~~Lf~~ 1008 (1008)
++++|+||+|+++|..|+.+++.+++++.. ....++.+||+.||.+
T Consensus 525 v~~~tiEe~i~~~~~~K~~l~~~v~~~~~~--~~~~~~~~~l~~Lf~~ 570 (644)
T 1z3i_X 525 LSTGTIEEKILQRQAHKKALSSCVVDEEQD--VERHFSLGELRELFSL 570 (644)
T ss_dssp EETTSHHHHHHHHHHHHHHTSCCCCSCSSS--CCCSSCHHHHHHHTCC
T ss_pred EECCCHHHHHHHHHHHHHHHHHHHHCCCCH--HHCCCCHHHHHHHHCC
T ss_conf 879889999999999999999998568605--4337899999998678
No 3
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=1.00 E-value=1 Score=625.87 Aligned_cols=464 Identities=33% Similarity=0.530 Sum_probs=399.5
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCHHHHHHHHHHHHCCCCCCCHHHHCCCCCCCCCCCCCCC
Q ss_conf 98743223541029999999982005877667601138898258999999984001122310111144321236678888
Q 001834 267 PDGLLSVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLDDDD 346 (1008)
Q Consensus 267 P~~~~~~~LrpyQ~~av~wml~~e~~~~~~~GGILADemGLGKTiqaIali~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (1008)
|.+ +...|+|||++|+.||...... ..||||||+||+|||+++++++......
T Consensus 31 p~~-~~~~L~~~Q~~~v~~l~~~~~~---~~~~ilad~~GlGKT~~ai~~i~~~~~~----------------------- 83 (500)
T 1z63_A 31 PYN-IKANLRPYQIKGFSWMRFMNKL---GFGICLADDMGLGKTLQTIAVFSDAKKE----------------------- 83 (500)
T ss_dssp CCS-CSSCCCHHHHHHHHHHHHHHHT---TCCEEECCCTTSCHHHHHHHHHHHHHHT-----------------------
T ss_pred CHH-HHCCCHHHHHHHHHHHHHHHHC---CCCEEEEECCCCCHHHHHHHHHHHHHHC-----------------------
T ss_conf 833-2003369999999999997417---9988998089973899999999988755-----------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCC
Q ss_conf 88876643222369889999987666654334788899855999182359999999998769999818999838998889
Q 001834 347 DNGNAGLDKVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKD 426 (1008)
Q Consensus 347 ~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tLIV~P~sLl~qW~~Ei~k~~~~~~~l~v~vy~g~~r~~~ 426 (1008)
.+.+++|||||.+|+.||.+|+.+|++ .+++.+++|....
T Consensus 84 -----------------------------------~~~~~~LIv~P~~l~~qw~~e~~~~~~---~~~v~~~~g~~~~-- 123 (500)
T 1z63_A 84 -----------------------------------NELTPSLVICPLSVLKNWEEELSKFAP---HLRFAVFHEDRSK-- 123 (500)
T ss_dssp -----------------------------------TCCSSEEEEECSTTHHHHHHHHHHHCT---TSCEEECSSSTTS--
T ss_pred -----------------------------------CCCCCEEEECCHHHHHHHHHHHHHHCC---CCEEEEEECCCHH--
T ss_conf -----------------------------------899978999038999999999999779---9559997267021--
Q ss_pred CCCCCCCCEEEECHHHHHCCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 10137874999650233102799999864666320276567661022322210122111135678888877776558888
Q 001834 427 PVELAKYDVVLTTYSIVTNEVPKQPSVDEEEADEKNGETYGLSSEFSVNKKRKKISNVSKRGKKGKKGNVNSSIDYGCGP 506 (1008)
Q Consensus 427 ~~~l~~~dVVItTY~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~k~~~~~~~~~k~~~~~~~~~~~~~~~~~ 506 (1008)
.....++|+|+||+++.++. .
T Consensus 124 -~~~~~~~ivi~t~~~l~~~~----------------------------------------------------------~ 144 (500)
T 1z63_A 124 -IKLEDYDIILTTYAVLLRDT----------------------------------------------------------R 144 (500)
T ss_dssp -CCGGGSSEEEEEHHHHTTCH----------------------------------------------------------H
T ss_pred -CCCCCCCEEEEEHHHHHCCC----------------------------------------------------------H
T ss_conf -00357768996379972630----------------------------------------------------------2
Q ss_pred CCCCEEEEEEECCCCCCCCCCCHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCC
Q ss_conf 63210209999157534892016999998600473799963588798557998999880698411599997703676668
Q 001834 507 LAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRFLKYDPYAVYKSFYSTIKIPISRN 586 (1008)
Q Consensus 507 L~~~~w~rVIiDEAH~iKN~~s~~~kal~~L~a~~rllLTGTPi~N~l~DL~sll~fL~p~~~~~~~~F~~~~~~pi~~~ 586 (1008)
+....|++||+||||+++|..++.++++..++++++|+|||||++|++.|+|++++||.|++++.+..|...|..|+...
T Consensus 145 l~~~~~~~vIvDEaH~~kn~~~~~~~~l~~l~~~~~l~LTaTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~ 224 (500)
T 1z63_A 145 LKEVEWKYIVIDEAQNIKNPQTKIFKAVKELKSKYRIALTGTPIENKVDDLWSIMTFLNPGLLGSYSEFKSKFATPIKKG 224 (500)
T ss_dssp HHTCCEEEEEEETGGGGSCTTSHHHHHHHTSCEEEEEEECSSCSTTCHHHHHHHHHHHSTTTTCCHHHHHTTTHHHHHTT
T ss_pred HCCCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCC
T ss_conf 11787287998084101787689999999600471899746777799999999999858775799899999852511146
Q ss_pred CHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHH
Q ss_conf 65678999999988663300365457976436999727899932999899999999999999999986208775008999
Q 001834 587 SLHGYKKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANI 666 (1008)
Q Consensus 587 ~~~~~~~L~~~L~~~~lRRtk~~v~~g~p~i~LP~k~~~~v~v~ls~~er~~Y~~l~~~~~~~~~~~~~~g~~~~~~~~i 666 (1008)
.......++.++.++++||++.+.. ....||++.+..+.+++++.|+.+|..+.......+ ...........+
T Consensus 225 ~~~~~~~l~~~l~~~~lrr~k~~~~---~~~~lp~~~~~~v~~~l~~~~~~~y~~~~~~~~~~~----~~~~~~~~~~~~ 297 (500)
T 1z63_A 225 DNMAKEELKAIISPFILRRTKYDKA---IINDLPDKIETNVYCNLTPEQAAMYKAEVENLFNNI----DSVTGIKRKGMI 297 (500)
T ss_dssp CHHHHHHHHHHHTTTEECCCTTCHH---HHTTSCSEEEEEEEECCCHHHHHHHHHHHHHHTTTT----TTCCTHHHHHHH
T ss_pred CHHHHHHHHHHHHHHEEEECCCCCC---HHHCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHH----HHHHCCCCHHHH
T ss_conf 6889999999976674550255424---112299975899981899999999999999999999----864232106799
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 99999987530622111123445321002787403993799999972011344233458999996003469523044443
Q 001834 667 LLMLLRLRQACDHPLLVKEYDFDSVGKISGEMAKRLPRDMLIDLLSRLETSSAICCVCSDPPEDSVVTMCGHVFCYQCAS 746 (1008)
Q Consensus 667 l~~LlrLRq~c~hP~l~~~~~~~~~~~~~~e~~~~l~~~~~~~l~~~le~~~~~C~ic~d~~~~~v~~~cgh~fc~~ci~ 746 (1008)
+..+++||++|+||.++....
T Consensus 298 ~~~l~~lr~~~~~p~l~~~~~----------------------------------------------------------- 318 (500)
T 1z63_A 298 LSTLLKLKQIVDHPALLKGGE----------------------------------------------------------- 318 (500)
T ss_dssp HHHHHHHHHHTTCTHHHHCSC-----------------------------------------------------------
T ss_pred HHHHHHHHHHHCCHHHHCCCC-----------------------------------------------------------
T ss_conf 999999998817998843852-----------------------------------------------------------
Q ss_pred HHHCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCC
Q ss_conf 21028999999861101236650200101023557999999999943444687676554135999999998631014655
Q 001834 747 EYITGDDNMCPAPRCKEQLGADVVFSKTTLKNCVSDDGGGSPTDSPFADKSGILDNEYISSKIRTVLDILHTQCELNTKC 826 (1008)
Q Consensus 747 ~~~~~~~~~cp~~~c~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SsKl~~l~elL~~~~~~~~~~ 826 (1008)
.....++|+..+.+++.+....+.
T Consensus 319 ------------------------------------------------------~~~~~s~K~~~l~~~l~~~~~~~~-- 342 (500)
T 1z63_A 319 ------------------------------------------------------QSVRRSGKMIRTMEIIEEALDEGD-- 342 (500)
T ss_dssp ------------------------------------------------------CCSTTCHHHHHHHHHHHHHHTTTC--
T ss_pred ------------------------------------------------------CHHHCCHHHHHHHHHHHHHHCCCC--
T ss_conf ------------------------------------------------------011115529999999999872688--
Q ss_pred CHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHC-CCEEEEECCCCCHHHHHHHHHHHCCCCCCE
Q ss_conf 2355520126889876557899999962999905277899999998755-970899607889789999999751696750
Q 001834 827 SIVEIHDLAGSNGSSAVHSKSPIEGPIKSIVFSQWTRMLDLVENSLNQH-CIQYRRLDGTMSLPARDRAVKDFNTDREQI 905 (1008)
Q Consensus 827 ~~~~~~~~~~~~~~~~~~~~~~~~~~~KvIIFsqft~~ld~L~~~L~~~-gi~~~~l~Gs~s~~~R~~~i~~F~~~~~~~ 905 (1008)
|+||||+|+.+++.++..|... |+.+..++|+++..+|++++++|+++++ +
T Consensus 343 ---------------------------k~lvF~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~R~~~~~~F~~~~~-~ 394 (500)
T 1z63_A 343 ---------------------------KIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPS-V 394 (500)
T ss_dssp ---------------------------CEEEECSCHHHHHHHHHHHHHHHTCCCCEEETTSCHHHHHHHHHHHHHCTT-C
T ss_pred ---------------------------CEEEEEEHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHCCCCC-C
T ss_conf ---------------------------689997218899999999988538876999799999999999999608999-8
Q ss_pred EEEEEECCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 89998337875544345679899956999978256997856513983429999998489999999999999999999751
Q 001834 906 TVMLMSLKAGNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVEDRILKLQDDKRKMVASAF 985 (1008)
Q Consensus 906 ~VLLiSlkagg~GLNL~~A~~VI~~Dp~WNp~~e~QAigRv~RiGQ~k~V~V~rli~~dTiEe~I~~lq~~K~~l~~~~~ 985 (1008)
+|+|++++++++|+||+.|++||+||++|||..+.||+||++|+||+++|+||+|++++|+|++|++++..|..+++.++
T Consensus 395 ~vil~st~~~~~Glnl~~~~~vi~~d~~~~~~~~~Q~~gR~~R~Gq~~~v~v~~lv~~~tiee~i~~~~~~K~~l~~~~~ 474 (500)
T 1z63_A 395 KFIVLSVKAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVGTLEEKIDQLLAFKRSLFKDII 474 (500)
T ss_dssp CCCEEECCCC-CCCCCTTCSEEEESSCCSCC---CHHHHTTTTTTTTSCEEEEEEEETTSHHHHTHHHHTTCSSSSSSGG
T ss_pred CEEEEECCCCCCCCCHHHCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 77999533355777445588899958998954589999988873898706999977489899999999999999999986
Q ss_pred CCCCCCCCCCCCCHHHHHHHHCC
Q ss_conf 68889986667899999964239
Q 001834 986 GEDQGGGTASRLTVEDLRYLFMV 1008 (1008)
Q Consensus 986 g~~~~~~~~~~l~~edl~~Lf~~ 1008 (1008)
+++. .....++.+||+.||++
T Consensus 475 ~~~~--~~~~~~~~~~l~~l~~~ 495 (500)
T 1z63_A 475 SSGD--SWITELSTEELRKVIEL 495 (500)
T ss_dssp GSTT--GGGGSSCHHHHHHHHSC
T ss_pred HCCC--CHHCCCCHHHHHHHHCC
T ss_conf 0685--02115999999999646
No 4
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=1.00 E-value=1 Score=457.88 Aligned_cols=427 Identities=18% Similarity=0.241 Sum_probs=314.6
Q ss_pred CCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCHHHHHHHHHHHHCCCCCCCHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf 32235410299999999820058776676011388982589999999840011223101111443212366788888887
Q 001834 271 LSVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLDDDDDNGN 350 (1008)
Q Consensus 271 ~~~~LrpyQ~~av~wml~~e~~~~~~~GGILADemGLGKTiqaIali~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (1008)
..++|+|||+.++.|++... ..|+||||+||+|||+++++++......
T Consensus 150 ~~~~LrpyQ~eav~~~l~~~-----~~~~LLad~tGlGKTi~Ai~~i~~l~~~--------------------------- 197 (968)
T 3dmq_A 150 QRTSLIPHQLNIAHDVGRRH-----APRVLLADEVGLGKTIEAGMILHQQLLS--------------------------- 197 (968)
T ss_dssp CSSCCCHHHHHHHHHHHHSS-----SCEEEECCCTTSCHHHHHHHHHHHHHHT---------------------------
T ss_pred CCCCCCHHHHHHHHHHHHHC-----CCCEEEECCCCCCHHHHHHHHHHHHHHH---------------------------
T ss_conf 89997099999999999705-----8988987899975999999999999981---------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCC----CC
Q ss_conf 66432223698899999876666543347888998559991823599999999987699998189998389988----89
Q 001834 351 AGLDKVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRT----KD 426 (1008)
Q Consensus 351 ~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tLIV~P~sLl~qW~~Ei~k~~~~~~~l~v~vy~g~~r~----~~ 426 (1008)
.+.+++|||||.+|+.||..|+.+++. +.+.++++.... ..
T Consensus 198 -------------------------------g~~~rvLIVvP~sLl~Qw~~E~~~~f~----l~v~v~~~~~~~~~~~~~ 242 (968)
T 3dmq_A 198 -------------------------------GAAERVLIIVPETLQHQWLVEMLRRFN----LRFALFDDERYAEAQHDA 242 (968)
T ss_dssp -------------------------------SSCCCEEEECCTTTHHHHHHHHHHHSC----CCCEECCHHHHHHHHHTT
T ss_pred -------------------------------CCCCEEEEEECHHHHHHHHHHHHHHHC----CCEEEECCCHHHHHHHHC
T ss_conf -------------------------------899829999578889999999999869----987998062055543200
Q ss_pred CCCCCCCCEEEECHHHHHCCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 10137874999650233102799999864666320276567661022322210122111135678888877776558888
Q 001834 427 PVELAKYDVVLTTYSIVTNEVPKQPSVDEEEADEKNGETYGLSSEFSVNKKRKKISNVSKRGKKGKKGNVNSSIDYGCGP 506 (1008)
Q Consensus 427 ~~~l~~~dVVItTY~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~k~~~~~~~~~k~~~~~~~~~~~~~~~~~ 506 (1008)
...+..++|+|+||+++.+.... ...
T Consensus 243 ~~~~~~~dIvI~T~~~L~~~~~~------------------------------------------------------~~~ 268 (968)
T 3dmq_A 243 YNPFDTEQLVICSLDFARRSKQR------------------------------------------------------LEH 268 (968)
T ss_dssp CSSSTTCSEEEECHHHHHTSTTT------------------------------------------------------THH
T ss_pred CCCCCCCCEEEECHHHHHHCHHH------------------------------------------------------HHH
T ss_conf 36445689899768998648788------------------------------------------------------887
Q ss_pred CCCCEEEEEEECCCCCCCCCCCHH---HHHHHHC--CCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHCCC
Q ss_conf 632102099991575348920169---9999860--04737999635887985579989998806984115999977036
Q 001834 507 LAKVGWFRVVLDEAQTIKNHRTQV---ARACCSL--RAKRRWCLSGTPIQNSIDDLYSYFRFLKYDPYAVYKSFYSTIKI 581 (1008)
Q Consensus 507 L~~~~w~rVIiDEAH~iKN~~s~~---~kal~~L--~a~~rllLTGTPi~N~l~DL~sll~fL~p~~~~~~~~F~~~~~~ 581 (1008)
+....|++||+||||+++|..+.. ++++..+ +++++|+|||||++|++.|+|++++|+.|+.|..+..|...+..
T Consensus 269 l~~~~~dlVIvDEAH~~kn~~~~~s~~~~~l~~L~~~~~~~L~LTATPi~n~~~el~sll~~L~p~~~~~~~~f~~~~~~ 348 (968)
T 3dmq_A 269 LCEAEWDLLVVDEAHHLVWSEDAPSREYQAIEQLAEHVPGVLLLTATPEQLGMESHFARLRLLDPNRFHDFAQFVEEQKN 348 (968)
T ss_dssp HHTSCCCEEEECCSSCCCCBTTBCCHHHHHHHHHHTTCSSEEESCSSCSSSCSSCTHHHHHHHCTTTCSSTHHHHHHHHH
T ss_pred HHHCCCCEEEEHHHHHHCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHH
T ss_conf 64158778974446762588875429999999986257858999768766987999999982593011898999999985
Q ss_pred CC----------CC--------------------------------C-CHHHHHHHHHHHH-----HHHHHHCCCCCCCC
Q ss_conf 76----------66--------------------------------8-6567899999998-----86633003654579
Q 001834 582 PI----------SR--------------------------------N-SLHGYKKLQAVLR-----AIMLRRTKGTFIDG 613 (1008)
Q Consensus 582 pi----------~~--------------------------------~-~~~~~~~L~~~L~-----~~~lRRtk~~v~~g 613 (1008)
.. .. . .......+..++. .+++|+++..+.
T Consensus 349 ~~~i~~~~~~l~~~~~~~~~~~~~L~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~i~~lld~~g~~~~l~r~~r~~i~-- 426 (968)
T 3dmq_A 349 YCPVADAVAMLLAGNKLSNDELNMLGEMIGEQDIEPLLQAANSDSEDAQSARQELVSMLMDRHGTSRVLFRNTRNGVK-- 426 (968)
T ss_dssp HHHHHHHHHTTTTSCCCCGGGTTSSTTTTCTTCSSTTGGGTCCCSSCSTTTHHHHHHHHGGGCTTTTTEECCCTTTCC--
T ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHC--
T ss_conf 788999999874267899889999998842033678875036222333799999999999861733265632265545--
Q ss_pred CCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 76436999727899932999899999999999999999986208775008999999999875306221111234453210
Q 001834 614 QPIINLPPKTISLTKVDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANILLMLLRLRQACDHPLLVKEYDFDSVGK 693 (1008)
Q Consensus 614 ~p~i~LP~k~~~~v~v~ls~~er~~Y~~l~~~~~~~~~~~~~~g~~~~~~~~il~~LlrLRq~c~hP~l~~~~~~~~~~~ 693 (1008)
.+|++....+.+++++.++..|...... ........ ....+.+|..+..
T Consensus 427 ----~~p~r~~~~~~l~~~~~~~~~~~~~~~~---------~~~~~~~~----------~~~~~l~pe~~~~-------- 475 (968)
T 3dmq_A 427 ----GFPKRELHTIKLPLPTQYQTAIKVSGIM---------GARKSAED----------RARDMLYPERIYQ-------- 475 (968)
T ss_dssp ----CCCCCCCCEEEECCCHHHHHHHHHHHHT---------TCCSSGGG----------GTHHHHCSGGGTT--------
T ss_pred ----CCCHHHEEEEECCCCHHHHHHHHHHHHH---------HHHHHHHH----------HHHHHCCHHHHHH--------
T ss_conf ----5671115752368999999999987543---------02126677----------7764108598998--------
Q ss_pred CHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCEEECC
Q ss_conf 02787403993799999972011344233458999996003469523044443210289999998611012366502001
Q 001834 694 ISGEMAKRLPRDMLIDLLSRLETSSAICCVCSDPPEDSVVTMCGHVFCYQCASEYITGDDNMCPAPRCKEQLGADVVFSK 773 (1008)
Q Consensus 694 ~~~e~~~~l~~~~~~~l~~~le~~~~~C~ic~d~~~~~v~~~cgh~fc~~ci~~~~~~~~~~cp~~~c~~~l~~~~~~~~ 773 (1008)
.+..
T Consensus 476 ------------------------------------------------------~l~~---------------------- 479 (968)
T 3dmq_A 476 ------------------------------------------------------EFEG---------------------- 479 (968)
T ss_dssp ------------------------------------------------------TTTS----------------------
T ss_pred ------------------------------------------------------HHHH----------------------
T ss_conf ------------------------------------------------------7643----------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 01023557999999999943444687676554135999999998631014655235552012688987655789999996
Q 001834 774 TTLKNCVSDDGGGSPTDSPFADKSGILDNEYISSKIRTVLDILHTQCELNTKCSIVEIHDLAGSNGSSAVHSKSPIEGPI 853 (1008)
Q Consensus 774 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SsKl~~l~elL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 853 (1008)
........+.|+..+.+++... .+ .
T Consensus 480 ------------------------~~~~~~~~~~K~~~L~~ll~~~--~~-----------------------------~ 504 (968)
T 3dmq_A 480 ------------------------DNATWWNFDPRVEWLMGYLTSH--RS-----------------------------Q 504 (968)
T ss_dssp ------------------------SSCCTTTTSHHHHHHHHHHHHT--SS-----------------------------S
T ss_pred ------------------------HHHCCCCCCHHHHHHHHHHHHC--CC-----------------------------C
T ss_conf ------------------------3313568567999999999837--99-----------------------------9
Q ss_pred EEEEEECCHHHHHHHHHHHHH-CCCEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCEEEEECC
Q ss_conf 299990527789999999875-5970899607889789999999751696750899983378755443456798999569
Q 001834 854 KSIVFSQWTRMLDLVENSLNQ-HCIQYRRLDGTMSLPARDRAVKDFNTDREQITVMLMSLKAGNLGLNMVAASHVILLDL 932 (1008)
Q Consensus 854 KvIIFsqft~~ld~L~~~L~~-~gi~~~~l~Gs~s~~~R~~~i~~F~~~~~~~~VLLiSlkagg~GLNL~~A~~VI~~Dp 932 (1008)
|+||||++..+++.|...|.. .|+.+..++|+|+..+|+++++.|+++.+.+.||+ +++++++|+|++.|++||+||+
T Consensus 505 k~iVF~~~~~~~~~l~~~L~~~~g~~~~~lhG~~~~~~R~~~l~~F~~g~~~~~vLv-aT~v~~~GlDl~~~~~VI~~d~ 583 (968)
T 3dmq_A 505 KVLVICAKAATALQLEQVLREREGIRAAVFHEGMSIIERDRAAAWFAEEDTGAQVLL-CSEIGSEGRNFQFASHMVMFDL 583 (968)
T ss_dssp CCCEECSSTHHHHHHHHHHHTTTCCCEEEECTTSCTTHHHHHHHHHHSTTSSCEEEE-CSCCTTCSSCCTTCCEEECSSC
T ss_pred CEEEEECCHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCCCCCEEE-ECCHHHCCCCCCCCCEEEEECC
T ss_conf 789996959999999999998749838998499999999999999747997630898-5334316888556767999569
Q ss_pred CCCCCHHHHHHHHHHHCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHH
Q ss_conf 999782569978565139834299999984899999999999999999997
Q 001834 933 WWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVEDRILKLQDDKRKMVAS 983 (1008)
Q Consensus 933 ~WNp~~e~QAigRv~RiGQ~k~V~V~rli~~dTiEe~I~~lq~~K~~l~~~ 983 (1008)
+|||..+.|++||++|+||++.|+||+++.++|+|++|++.+..|.+++..
T Consensus 584 p~~~~~~~Q~~GR~~R~Gq~~~v~v~~~~~~~t~ee~i~~~~~~k~~~~~~ 634 (968)
T 3dmq_A 584 PFNPDLLEQRIGRLDRIGQAHDIQIHVPYLEKTAQSVLVRWYHEGLDAFEH 634 (968)
T ss_dssp CSSHHHHHHHHHTTSCSSSCSCCEEEEEEETTSHHHHHHHHHHHTTCCSSS
T ss_pred CCCHHHHHHHHHCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHCCCCEEC
T ss_conf 998789998701143079985089998057771999999999867876353
No 5
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=1.00 E-value=1 Score=378.42 Aligned_cols=465 Identities=16% Similarity=0.165 Sum_probs=286.0
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCHHHHHHHHHHHHCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf 22354102999999998200587766760113889825899999998400112231011114432123667888888876
Q 001834 272 SVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLDDDDDNGNA 351 (1008)
Q Consensus 272 ~~~LrpyQ~~av~wml~~e~~~~~~~GGILADemGLGKTiqaIali~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (1008)
..+|+|||++++.|++.. ++||+++||+|||+++++++.....
T Consensus 7 ~~~l~~~Q~~~i~~~~~~--------~~ll~~~tG~GKT~~~~~~~~~~~~----------------------------- 49 (494)
T 1wp9_A 7 LIQPRIYQEVIYAKCKET--------NCLIVLPTGLGKTLIAMMIAEYRLT----------------------------- 49 (494)
T ss_dssp HHCCCHHHHHHHHHGGGS--------CEEEECCTTSCHHHHHHHHHHHHHH-----------------------------
T ss_pred CCCCCHHHHHHHHHHHHC--------CEEEECCCCCCHHHHHHHHHHHHHH-----------------------------
T ss_conf 878639999999999619--------9899918998789999999999986-----------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCH-HHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCC-CC
Q ss_conf 643222369889999987666654334788899855999182-3599999999987699998189998389988891-01
Q 001834 352 GLDKVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPA-SVLRQWARELEDKVPDKAALSVLIYHGGSRTKDP-VE 429 (1008)
Q Consensus 352 ~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tLIV~P~-sLl~qW~~Ei~k~~~~~~~l~v~vy~g~~r~~~~-~~ 429 (1008)
.+.+.+|||||. +|+.||.+|+.+++... ..++..++|....... ..
T Consensus 50 ------------------------------~~~~~~liv~P~~~L~~q~~~~~~~~~~~~-~~~v~~~~g~~~~~~~~~~ 98 (494)
T 1wp9_A 50 ------------------------------KYGGKVLMLAPTKPLVLQHAESFRRLFNLP-PEKIVALTGEKSPEERSKA 98 (494)
T ss_dssp ------------------------------HSCSCEEEECSSHHHHHHHHHHHHHHBCSC-GGGEEEECSCSCHHHHHHH
T ss_pred ------------------------------CCCCEEEEEECCHHHHHHHHHHHHHHHCCC-HHHEEEEECCCCHHHHHHH
T ss_conf ------------------------------479859999788899999999999874756-1116876077533556653
Q ss_pred CCCCCEEEECHHHHHCCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 37874999650233102799999864666320276567661022322210122111135678888877776558888632
Q 001834 430 LAKYDVVLTTYSIVTNEVPKQPSVDEEEADEKNGETYGLSSEFSVNKKRKKISNVSKRGKKGKKGNVNSSIDYGCGPLAK 509 (1008)
Q Consensus 430 l~~~dVVItTY~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~k~~~~~~~~~k~~~~~~~~~~~~~~~~~L~~ 509 (1008)
+..++|+|+||+.+...... +.+..
T Consensus 99 ~~~~~ivv~T~~~l~~~~~~-------------------------------------------------------~~~~~ 123 (494)
T 1wp9_A 99 WARAKVIVATPQTIENDLLA-------------------------------------------------------GRISL 123 (494)
T ss_dssp HHHCSEEEECHHHHHHHHHT-------------------------------------------------------TSCCT
T ss_pred CCCCCEEEECHHHHHHHHHC-------------------------------------------------------CCCCH
T ss_conf 35798999639999999860-------------------------------------------------------87156
Q ss_pred CEEEEEEECCCCCCCCCCCHHH--HHH-HHCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCCHHHHH---HHHCCCCC
Q ss_conf 1020999915753489201699--999-86004737999635887985579989998806984115999---97703676
Q 001834 510 VGWFRVVLDEAQTIKNHRTQVA--RAC-CSLRAKRRWCLSGTPIQNSIDDLYSYFRFLKYDPYAVYKSF---YSTIKIPI 583 (1008)
Q Consensus 510 ~~w~rVIiDEAH~iKN~~s~~~--kal-~~L~a~~rllLTGTPi~N~l~DL~sll~fL~p~~~~~~~~F---~~~~~~pi 583 (1008)
..|++||+||||.+++...... +.+ ...+..++|+|||||. |+..+++.++.++..........+ ...+..+.
T Consensus 124 ~~~~~vIiDEaH~~~~~~~~~~~~~~~~~~~~~~~~l~lTaTp~-~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 202 (494)
T 1wp9_A 124 EDVSLIVFDEAHRAVGNYAYVFIAREYKRQAKNPLVIGLTASPG-STPEKIMEVINNLGIEHIEYRSENSPDVRPYVKGI 202 (494)
T ss_dssp TSCSEEEEETGGGCSTTCHHHHHHHHHHHHCSSCCEEEEESCSC-SSHHHHHHHHHHTTCCEEEECCTTSTTTGGGCCCC
T ss_pred HHCEEEEEECCCCCCCCCCHHHHHHHHHHCCCCCEEEEEECCCC-CCCHHHHHHHHHCCHHEEECCCCCCHHHHHHCCCC
T ss_conf 54108999787566888819999999973288776999956998-88578999998507000502678758788752787
Q ss_pred -----CCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHCC-
Q ss_conf -----66865678999999988663300365457976436999727899932999899999999999999999986208-
Q 001834 584 -----SRNSLHGYKKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEWAFYKKLESDSLKKFKAFADAG- 657 (1008)
Q Consensus 584 -----~~~~~~~~~~L~~~L~~~~lRRtk~~v~~g~p~i~LP~k~~~~v~v~ls~~er~~Y~~l~~~~~~~~~~~~~~g- 657 (1008)
..........+...+..++.++.+.....| .+++.. ..++..+.. .+... +......+
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~-----~~~~~~~~~---~~~~~----~~~~~~~~~ 266 (494)
T 1wp9_A 203 RFEWVRVDLPEIYKEVRKLLREMLRDALKPLAETG----LLESSS-----PDIPKKEVL---RAGQI----INEEMAKGN 266 (494)
T ss_dssp CEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHT----SSSCCC-----TTSCHHHHH---HHHHH----HHHHHTTTC
T ss_pred CEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHC----CCCCCC-----CCCCHHHHH---HHHHH----HHHHHHCCC
T ss_conf 42689568858899999989899999999999735----565457-----773355789---99999----998753356
Q ss_pred CCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 77500899999999987530622111123445321002787403993799999972011344233458999996003469
Q 001834 658 TVNQNYANILLMLLRLRQACDHPLLVKEYDFDSVGKISGEMAKRLPRDMLIDLLSRLETSSAICCVCSDPPEDSVVTMCG 737 (1008)
Q Consensus 658 ~~~~~~~~il~~LlrLRq~c~hP~l~~~~~~~~~~~~~~e~~~~l~~~~~~~l~~~le~~~~~C~ic~d~~~~~v~~~cg 737 (1008)
...-.....+..+..+........ .........++..+... | ..... ....
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~l~~~---~---~~~~~----~~~~ 317 (494)
T 1wp9_A 267 HDLRGLLLYHAMALKLHHAIELLE-------------------TQGLSALRAYIKKLYEE---A---KAGST----KASK 317 (494)
T ss_dssp CSTTTHHHHHHHHHHHHHHHHHHH-------------------HTCHHHHHHHHHHHHHH---H---HTTCC----HHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHH-------------------HHCHHHHHHHHHHHHHH---H---CCCCC----HHHH
T ss_conf 311347999988888999999998-------------------52579999999999875---2---23211----4556
Q ss_pred CCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 52304444321028999999861101236650200101023557999999999943444687676554135999999998
Q 001834 738 HVFCYQCASEYITGDDNMCPAPRCKEQLGADVVFSKTTLKNCVSDDGGGSPTDSPFADKSGILDNEYISSKIRTVLDILH 817 (1008)
Q Consensus 738 h~fc~~ci~~~~~~~~~~cp~~~c~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SsKl~~l~elL~ 817 (1008)
..++..-+.+... .|.. .......++|+..+.++|.
T Consensus 318 ~~~~~~~~~~~~~---------~~~~-----------------------------------~~~~~~~~~k~~~l~~~l~ 353 (494)
T 1wp9_A 318 EIFSDKRMKKAIS---------LLVQ-----------------------------------AKEIGLDHPKMDKLKEIIR 353 (494)
T ss_dssp HHHTSHHHHHHHH---------HHHH-----------------------------------HHHHTCSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH---------HHHH-----------------------------------HHHCCCCCHHHHHHHHHHH
T ss_conf 6665078898999---------9998-----------------------------------8745899869999999999
Q ss_pred HHHHCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHCCCEEEEECC--------CCCHH
Q ss_conf 6310146552355520126889876557899999962999905277899999998755970899607--------88978
Q 001834 818 TQCELNTKCSIVEIHDLAGSNGSSAVHSKSPIEGPIKSIVFSQWTRMLDLVENSLNQHCIQYRRLDG--------TMSLP 889 (1008)
Q Consensus 818 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvIIFsqft~~ld~L~~~L~~~gi~~~~l~G--------s~s~~ 889 (1008)
....... +.|+|||+++..+++.+...|...|+.+..++| +++..
T Consensus 354 ~~~~~~~---------------------------~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~~~~~~~~ 406 (494)
T 1wp9_A 354 EQLQRKQ---------------------------NSKIIVFTNYRETAKKIVNELVKDGIKAKRFVGQASKENDRGLSQR 406 (494)
T ss_dssp HHHHHCT---------------------------TCCEEEECSCHHHHHHHHHHHHHTTCCEEEECCSSCC-------CC
T ss_pred HHHCCCC---------------------------CCEEEEEECCHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCHH
T ss_conf 9843689---------------------------9759999766899999999999759980799656654444458999
Q ss_pred HHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCCEEEEEEEECCCHHHH
Q ss_conf 99999997516967508999833787554434567989995699997825699785651398342999999848999999
Q 001834 890 ARDRAVKDFNTDREQITVMLMSLKAGNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVEDR 969 (1008)
Q Consensus 890 ~R~~~i~~F~~~~~~~~VLLiSlkagg~GLNL~~A~~VI~~Dp~WNp~~e~QAigRv~RiGQ~k~V~V~rli~~dTiEe~ 969 (1008)
+|+++++.|+++. +.||+ +++++++|+||+.+++||+||++|||..+.|++||++|.|| +.+|+|++++|+||+
T Consensus 407 ~r~~~~~~F~~~~--~~vLv-~T~~~~~Gldl~~~~~Vi~~d~~~~~~~~~Qr~GR~~R~g~---g~~~~l~~~~t~ee~ 480 (494)
T 1wp9_A 407 EQKLILDEFARGE--FNVLV-ATSVGEEGLDVPEVDLVVFYEPVPSAIRSIQRRGRTGRHMP---GRVIILMAKGTRDEA 480 (494)
T ss_dssp HHHHHHHHHHHTS--CSEEE-ECGGGGGGGGSTTCCEEEESSCCHHHHHHHHHHTTSCSCCC---SEEEEEEETTSHHHH
T ss_pred HHHHHHHHHHCCC--CEEEE-ECCCCCCCCCCHHCCEEEEECCCCCHHHHHHHHHHCCCCCC---CEEEEEEECCCHHHH
T ss_conf 9999999986699--46999-88841258871437989992898878999998752257788---469999956987899
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 9999999999999
Q 001834 970 ILKLQDDKRKMVA 982 (1008)
Q Consensus 970 I~~lq~~K~~l~~ 982 (1008)
++.++..|.+++.
T Consensus 481 ~~~~~~~k~~~~~ 493 (494)
T 1wp9_A 481 YYWSSRQKEKIMQ 493 (494)
T ss_dssp HHHHCC-------
T ss_pred HHHHHHHHHHHHC
T ss_conf 9998887898730
No 6
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=1.00 E-value=1 Score=346.67 Aligned_cols=255 Identities=29% Similarity=0.443 Sum_probs=222.3
Q ss_pred HHHHHHCCCCCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCC
Q ss_conf 86633003654579764369997278999329998999999999999999999862087750089999999998753062
Q 001834 600 AIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANILLMLLRLRQACDH 679 (1008)
Q Consensus 600 ~~~lRRtk~~v~~g~p~i~LP~k~~~~v~v~ls~~er~~Y~~l~~~~~~~~~~~~~~g~~~~~~~~il~~LlrLRq~c~h 679 (1008)
.--+||+|.++.. +|||+.+.+++|+|++.|+++|..+.......+. ..........++..+++||++|+|
T Consensus 11 ~~~~rr~k~~v~~-----~LP~k~e~~v~v~ls~~Q~~~Y~~~~~~~~~~~~----~~~~~~~~~~~l~~l~~Lrq~~~h 81 (271)
T 1z5z_A 11 SSGLVPRGSHMAS-----DLPDKIETNVYCNLTPEQAAMYKAEVENLFNNID----SVTGIKRKGMILSTLLKLKQIVDH 81 (271)
T ss_dssp ----------------------CEEEEEEECCCHHHHHHHHHHHHHHHHHTT----TCCHHHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCCCCHHHHHH-----HCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHH----HCCCCCHHHHHHHHHHHHHHHCCC
T ss_conf 5564164877875-----1999779999818999999999999999999997----403521288999999999998489
Q ss_pred CCCCCCCCCCCCCCCHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCC
Q ss_conf 21111234453210027874039937999999720113442334589999960034695230444432102899999986
Q 001834 680 PLLVKEYDFDSVGKISGEMAKRLPRDMLIDLLSRLETSSAICCVCSDPPEDSVVTMCGHVFCYQCASEYITGDDNMCPAP 759 (1008)
Q Consensus 680 P~l~~~~~~~~~~~~~~e~~~~l~~~~~~~l~~~le~~~~~C~ic~d~~~~~v~~~cgh~fc~~ci~~~~~~~~~~cp~~ 759 (1008)
|.++....
T Consensus 82 P~l~~~~~------------------------------------------------------------------------ 89 (271)
T 1z5z_A 82 PALLKGGE------------------------------------------------------------------------ 89 (271)
T ss_dssp THHHHCSC------------------------------------------------------------------------
T ss_pred HHHHCCCC------------------------------------------------------------------------
T ss_conf 98846873------------------------------------------------------------------------
Q ss_pred CCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHCCCCCCC
Q ss_conf 11012366502001010235579999999999434446876765541359999999986310146552355520126889
Q 001834 760 RCKEQLGADVVFSKTTLKNCVSDDGGGSPTDSPFADKSGILDNEYISSKIRTVLDILHTQCELNTKCSIVEIHDLAGSNG 839 (1008)
Q Consensus 760 ~c~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SsKl~~l~elL~~~~~~~~~~~~~~~~~~~~~~~ 839 (1008)
.....|+|+..+.++|.+....+.
T Consensus 90 -----------------------------------------~~~~~s~K~~~L~~ll~~~~~~~~--------------- 113 (271)
T 1z5z_A 90 -----------------------------------------QSVRRSGKMIRTMEIIEEALDEGD--------------- 113 (271)
T ss_dssp -----------------------------------------CCSTTCHHHHHHHHHHHHHHHTTC---------------
T ss_pred -----------------------------------------CCCCCCHHHHHHHHHHHHHHHCCC---------------
T ss_conf -----------------------------------------223468999999999999986799---------------
Q ss_pred CCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHC-CCEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEEEECCCCCCC
Q ss_conf 876557899999962999905277899999998755-9708996078897899999997516967508999833787554
Q 001834 840 SSAVHSKSPIEGPIKSIVFSQWTRMLDLVENSLNQH-CIQYRRLDGTMSLPARDRAVKDFNTDREQITVMLMSLKAGNLG 918 (1008)
Q Consensus 840 ~~~~~~~~~~~~~~KvIIFsqft~~ld~L~~~L~~~-gi~~~~l~Gs~s~~~R~~~i~~F~~~~~~~~VLLiSlkagg~G 918 (1008)
|+||||+|+.+++.|+..|... |+.+.+++|+++..+|+++++.|+++++ ++|+|+|+++||+|
T Consensus 114 --------------kvlIFs~~~~~~~~l~~~L~~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~-~~v~L~st~~~g~G 178 (271)
T 1z5z_A 114 --------------KIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPS-VKFIVLSVKAGGFG 178 (271)
T ss_dssp --------------CEEEEESCHHHHHHHHHHHHHHHCSCCCEECTTSCHHHHHHHHHHHHHCTT-CCEEEEECCTTCCC
T ss_pred --------------EEEEEECCHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHCCCCC-CCEEEEEHHHHCCC
T ss_conf --------------699995519999999999987339847999799999999999998328999-97899722351588
Q ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 43456798999569999782569978565139834299999984899999999999999999997516888998666789
Q 001834 919 LNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVEDRILKLQDDKRKMVASAFGEDQGGGTASRLT 998 (1008)
Q Consensus 919 LNL~~A~~VI~~Dp~WNp~~e~QAigRv~RiGQ~k~V~V~rli~~dTiEe~I~~lq~~K~~l~~~~~g~~~~~~~~~~l~ 998 (1008)
|||+.|++||+||+||||..+.||+||+||+||+++|+||+|++++|+||+|++++..|..+++.+++++. .....++
T Consensus 179 lnl~~a~~VI~~d~~wnp~~~~Q~~gR~~R~Gq~~~v~v~~li~~~TiEe~i~~~~~~K~~l~~~~~~~~~--~~~~~~~ 256 (271)
T 1z5z_A 179 INLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVGTLEEKIDQLLAFKRSLFKDIISSGD--SWITELS 256 (271)
T ss_dssp CCCTTCSEEEECSCCSCTTTC--------------CCEEEEEEETTSHHHHHHHHHHHCHHHHTTGGGGTT--HHHHTSC
T ss_pred CCCCCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCC--HHHHCCC
T ss_conf 67644899999799998518999998523238998569999854988999999999999999999971670--5432389
Q ss_pred HHHHHHHHCC
Q ss_conf 9999964239
Q 001834 999 VEDLRYLFMV 1008 (1008)
Q Consensus 999 ~edl~~Lf~~ 1008 (1008)
.+||+.||.+
T Consensus 257 ~~~l~~l~~~ 266 (271)
T 1z5z_A 257 TEELRKVIEL 266 (271)
T ss_dssp HHHHHHHHSC
T ss_pred HHHHHHHHCC
T ss_conf 9999999655
No 7
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=1.00 E-value=1 Score=337.30 Aligned_cols=379 Identities=19% Similarity=0.180 Sum_probs=263.9
Q ss_pred CCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCHHHHHHHHHHHHCCCCCCCHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf 32235410299999999820058776676011388982589999999840011223101111443212366788888887
Q 001834 271 LSVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLDDDDDNGN 350 (1008)
Q Consensus 271 ~~~~LrpyQ~~av~wml~~e~~~~~~~GGILADemGLGKTiqaIali~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (1008)
...+|+|||.+++.+++.. ..+||+++||+|||++++.++...
T Consensus 90 ~~~~l~~~Q~~ai~~i~~~-------~~~ll~~~TGsGKT~~~l~~i~~~------------------------------ 132 (472)
T 2fwr_A 90 AEISLRDYQEKALERWLVD-------KRGCIVLPTGSGKTHVAMAAINEL------------------------------ 132 (472)
T ss_dssp CCCCBCHHHHHHHHHHTTT-------TEEEEECCTTSCHHHHHHHHHHHH------------------------------
T ss_pred CCCCCCHHHHHHHHHHHHC-------CCEEEEECCCCCHHHHHHHHHHHC------------------------------
T ss_conf 8998688999999999965-------987999699998899999999980------------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCH-HHHHHHHHHHHHHCCCCCCEE-EEEEECCCCCCCCC
Q ss_conf 6643222369889999987666654334788899855999182-359999999998769999818-99983899888910
Q 001834 351 AGLDKVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPA-SVLRQWARELEDKVPDKAALS-VLIYHGGSRTKDPV 428 (1008)
Q Consensus 351 ~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tLIV~P~-sLl~qW~~Ei~k~~~~~~~l~-v~vy~g~~r~~~~~ 428 (1008)
.+.+|||||. +|+.||.+++.++ .+. +.+++|....
T Consensus 133 ---------------------------------~~~~Lvl~P~~~L~~Q~~~~~~~~-----~~~~v~~~~g~~~~---- 170 (472)
T 2fwr_A 133 ---------------------------------STPTLIVVPTLALAEQWKERLGIF-----GEEYVGEFSGRIKE---- 170 (472)
T ss_dssp ---------------------------------CSCEEEEESSHHHHHHHHHHGGGG-----CGGGEEEBSSSCBC----
T ss_pred ---------------------------------CCCEEEEECCHHHHHHHHHHHHHC-----CCCCEEEECCCCCC----
T ss_conf ---------------------------------999999987999999999999967-----99636998787677----
Q ss_pred CCCCCCEEEECHHHHHCCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 13787499965023310279999986466632027656766102232221012211113567888887777655888863
Q 001834 429 ELAKYDVVLTTYSIVTNEVPKQPSVDEEEADEKNGETYGLSSEFSVNKKRKKISNVSKRGKKGKKGNVNSSIDYGCGPLA 508 (1008)
Q Consensus 429 ~l~~~dVVItTY~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~k~~~~~~~~~k~~~~~~~~~~~~~~~~~L~ 508 (1008)
..+|+|+||+.+..... ..
T Consensus 171 ---~~~Ivv~T~~~l~~~~~----------------------------------------------------------~~ 189 (472)
T 2fwr_A 171 ---LKPLTVSTYDSAYVNAE----------------------------------------------------------KL 189 (472)
T ss_dssp ---CCSEEEEEHHHHHHTHH----------------------------------------------------------HH
T ss_pred ---CCCEEEEECHHHHHHHH----------------------------------------------------------HH
T ss_conf ---67789997689997799----------------------------------------------------------73
Q ss_pred CCEEEEEEECCCCCCCCCCCHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCCH
Q ss_conf 21020999915753489201699999860047379996358879855799899988069841159999770367666865
Q 001834 509 KVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRFLKYDPYAVYKSFYSTIKIPISRNSL 588 (1008)
Q Consensus 509 ~~~w~rVIiDEAH~iKN~~s~~~kal~~L~a~~rllLTGTPi~N~l~DL~sll~fL~p~~~~~~~~F~~~~~~pi~~~~~ 588 (1008)
.-.|.+||+||+|.+.+.... ..+..+.+.++++|||||..+.-.+.
T Consensus 190 ~~~~~liIvDEaH~~~~~~~~--~~~~~~~~~~~l~lSATp~~~~~~~~------------------------------- 236 (472)
T 2fwr_A 190 GNRFMLLIFDEVHHLPAESYV--QIAQMSIAPFRLGLTATFEREDGRHE------------------------------- 236 (472)
T ss_dssp TTTCSEEEEETGGGTTSTTTH--HHHHTCCCSEEEEEESCCCCTTSGGG-------------------------------
T ss_pred CCCCCEEEEECCCCCCCHHHH--HHHHHCCCCEEEEEECCCCCCCCHHH-------------------------------
T ss_conf 687778999897578976899--99973577818999327668897789-------------------------------
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH
Q ss_conf 67899999998866330036545797643699972789993299989999999999999999998620877500899999
Q 001834 589 HGYKKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANILL 668 (1008)
Q Consensus 589 ~~~~~L~~~L~~~~lRRtk~~v~~g~p~i~LP~k~~~~v~v~ls~~er~~Y~~l~~~~~~~~~~~~~~g~~~~~~~~il~ 668 (1008)
.+..++.+.+.++...++..+ .+++.....+.+++++.++..|..+...... +.......
T Consensus 237 ----~l~~~~~~~~~~~~~~~l~~~----~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~l~~~~~~-------- 296 (472)
T 2fwr_A 237 ----ILKEVVGGKVFELFPDSLAGK----HLAKYTIKRIFVPLAEDERVEYEKREKVYKQ----FLRARGIT-------- 296 (472)
T ss_dssp ----SHHHHTCCEEEECCHHHHTSC----CCCSEEECCEEECCCHHHHHHTTTTTHHHHS----CSSSCCCT--------
T ss_pred ----HHHHHHCCEEEECCHHHHHCC----CCCCEEEEEEECCCCHHHHHHHHHHHHHHHH----HHHHCCCC--------
T ss_conf ----999972985765478987067----6788189999858998999999999999999----99864754--------
Q ss_pred HHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 99998753062211112344532100278740399379999997201134423345899999600346952304444321
Q 001834 669 MLLRLRQACDHPLLVKEYDFDSVGKISGEMAKRLPRDMLIDLLSRLETSSAICCVCSDPPEDSVVTMCGHVFCYQCASEY 748 (1008)
Q Consensus 669 ~LlrLRq~c~hP~l~~~~~~~~~~~~~~e~~~~l~~~~~~~l~~~le~~~~~C~ic~d~~~~~v~~~cgh~fc~~ci~~~ 748 (1008)
+. .+.-+.. .+..++
T Consensus 297 ----~~----~~~~~~~----------------------------------------------~~~~~~----------- 311 (472)
T 2fwr_A 297 ----LR----RAEDFNK----------------------------------------------IVMASG----------- 311 (472)
T ss_dssp ----TT----CCSSSTT----------------------------------------------TTTTTC-----------
T ss_pred ----CC----CHHHHHH----------------------------------------------HHHHHC-----------
T ss_conf ----22----4466899----------------------------------------------998723-----------
Q ss_pred HCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCH
Q ss_conf 02899999986110123665020010102355799999999994344468767655413599999999863101465523
Q 001834 749 ITGDDNMCPAPRCKEQLGADVVFSKTTLKNCVSDDGGGSPTDSPFADKSGILDNEYISSKIRTVLDILHTQCELNTKCSI 828 (1008)
Q Consensus 749 ~~~~~~~cp~~~c~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SsKl~~l~elL~~~~~~~~~~~~ 828 (1008)
.++ .++..+... ... .......+.|+..+.+++... .+
T Consensus 312 ------~~~--~~~~~~~~~-----~~~----------------------~~~~~~~~~k~~~l~~~l~~~--~~----- 349 (472)
T 2fwr_A 312 ------YDE--RAYEALRAW-----EEA----------------------RRIAFNSKNKIRKLREILERH--RK----- 349 (472)
T ss_dssp ------CSS--SSSTTTHHH-----HHH----------------------HHHHHSCSHHHHHHHHHHHHT--SS-----
T ss_pred ------CCH--HHHHHHHHH-----HHH----------------------HHHHHCCHHHHHHHHHHHHHC--CC-----
T ss_conf ------698--899999999-----999----------------------997633738999999999857--89-----
Q ss_pred HHHHCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHCCCCCCEEEE
Q ss_conf 55520126889876557899999962999905277899999998755970899607889789999999751696750899
Q 001834 829 VEIHDLAGSNGSSAVHSKSPIEGPIKSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREQITVM 908 (1008)
Q Consensus 829 ~~~~~~~~~~~~~~~~~~~~~~~~~KvIIFsqft~~ld~L~~~L~~~gi~~~~l~Gs~s~~~R~~~i~~F~~~~~~~~VL 908 (1008)
.|+|||+++..+++.+...|. +..++|+++..+|+++++.|+++. ++||
T Consensus 350 ------------------------~k~lvF~~~~~~~~~l~~~l~-----~~~~~g~~~~~~R~~~~~~F~~g~--~~vL 398 (472)
T 2fwr_A 350 ------------------------DKIIIFTRHNELVYRISKVFL-----IPAITHRTSREEREEILEGFRTGR--FRAI 398 (472)
T ss_dssp ------------------------SCBCCBCSCHHHHHHHHHHTT-----CCBCCSSSCSHHHHTHHHHHHHSS--CSBC
T ss_pred ------------------------CCEEEEECCHHHHHHHHHHHC-----CCEEECCCCHHHHHHHHHHHHCCC--CCEE
T ss_conf ------------------------838999797999999999748-----655628999999999999986799--8889
Q ss_pred EEECCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCC-CCEEEEEEEECCCHHHHHHHHHHHHHHHH
Q ss_conf 98337875544345679899956999978256997856513983-42999999848999999999999999999
Q 001834 909 LMSLKAGNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQT-RPVTVTRLTIRDTVEDRILKLQDDKRKMV 981 (1008)
Q Consensus 909 LiSlkagg~GLNL~~A~~VI~~Dp~WNp~~e~QAigRv~RiGQ~-k~V~V~rli~~dTiEe~I~~lq~~K~~l~ 981 (1008)
+ +++++++|+|++.+++||++|++||+..+.|++||++|.||. +.|.||.|+.++|+|+++.++++.|.+++
T Consensus 399 v-~T~~~~~Gldlp~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~k~~~~i~~lv~~~t~ee~~~~~r~~~~~~a 471 (472)
T 2fwr_A 399 V-SSQVLDEGIDVPDANVGVIMSGSGSAREYIQRLGRILRPSKGKKEAVLYELISRGTGEVNTARRRKNAAKGA 471 (472)
T ss_dssp B-CSSCCCSSSCSCCBSEEEEECCSSCCHHHHHHHHHSBCCCTTTCCEEEEEEEECSCC---------------
T ss_pred E-ECCCHHCCCCCCCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCCEEEEEEEEECCCCHHHHHHHHHHHHCCC
T ss_conf 9-857051484620286899989999888999987631577799853999999819985379999998765058
No 8
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=1.00 E-value=1 Score=324.15 Aligned_cols=479 Identities=14% Similarity=0.140 Sum_probs=263.6
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCHHHHHHHHHHHHCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf 22354102999999998200587766760113889825899999998400112231011114432123667888888876
Q 001834 272 SVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLDDDDDNGNA 351 (1008)
Q Consensus 272 ~~~LrpyQ~~av~wml~~e~~~~~~~GGILADemGLGKTiqaIali~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (1008)
..+|+|||.+++.|++.. ..+|++++||+|||++++..+......
T Consensus 246 ~~~~r~~Q~~ai~~il~g-------~~~ll~a~TGsGKTl~~~~~i~~~l~~---------------------------- 290 (936)
T 4a2w_A 246 TKKARSYQIELAQPAING-------KNALICAPTGSGKTFVSILICEHHFQN---------------------------- 290 (936)
T ss_dssp --CCCHHHHHHHHHHHTT-------CCEEEECCTTSCHHHHHHHHHHTTTTT----------------------------
T ss_pred CCCCCHHHHHHHHHHHCC-------CCEEEEECCCCHHHHHHHHHHHHHHHH----------------------------
T ss_conf 898779999999999809-------989999699845999999999999973----------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCH-HHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCC--CC
Q ss_conf 643222369889999987666654334788899855999182-359999999998769999818999838998889--10
Q 001834 352 GLDKVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPA-SVLRQWARELEDKVPDKAALSVLIYHGGSRTKD--PV 428 (1008)
Q Consensus 352 ~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tLIV~P~-sLl~qW~~Ei~k~~~~~~~l~v~vy~g~~r~~~--~~ 428 (1008)
......+++|||||. +|+.||.+++.++++.. .+++..++|+..... ..
T Consensus 291 ---------------------------~~~~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~-~~~v~~~~G~~~~~~~~~~ 342 (936)
T 4a2w_A 291 ---------------------------MPAGRKAKVVFLATKVPVYEQQKNVFKHHFERQ-GYSVQGISGENFSNVSVEK 342 (936)
T ss_dssp ---------------------------CCSSCCCCEEEECSSHHHHHHHHHHHHHHHHTT-TCCEEEECCC-----CCHH
T ss_pred ---------------------------CCCCCCCEEEEEECCHHHHHHHHHHHHHHHCCC-CCEEEEEECCCCHHHHHHH
T ss_conf ---------------------------655689859999698999999999999971216-9559999799631257897
Q ss_pred CCCCCCEEEECHHHHHCCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-
Q ss_conf 1378749996502331027999998646663202765676610223222101221111356788888777765588886-
Q 001834 429 ELAKYDVVLTTYSIVTNEVPKQPSVDEEEADEKNGETYGLSSEFSVNKKRKKISNVSKRGKKGKKGNVNSSIDYGCGPL- 507 (1008)
Q Consensus 429 ~l~~~dVVItTY~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~k~~~~~~~~~k~~~~~~~~~~~~~~~~~L- 507 (1008)
....++|+|+||+.+...... +.+
T Consensus 343 ~~~~~~IvI~Tp~~L~~~l~~-------------------------------------------------------~~~~ 367 (936)
T 4a2w_A 343 VIEDSDIIVVTPQILVNSFED-------------------------------------------------------GTLT 367 (936)
T ss_dssp HHHHCSEEEECHHHHHHHHHS-------------------------------------------------------SSCC
T ss_pred HCCCCCEEEECHHHHHHHHHC-------------------------------------------------------CCCC
T ss_conf 416999999449999999871-------------------------------------------------------7645
Q ss_pred CCCEEEEEEECCCCCCCCCCCHHHHHHHHCC--------CCCEEEEECCCCCCCHHHHHHHHH-------HHCCCCC---
Q ss_conf 3210209999157534892016999998600--------473799963588798557998999-------8806984---
Q 001834 508 AKVGWFRVVLDEAQTIKNHRTQVARACCSLR--------AKRRWCLSGTPIQNSIDDLYSYFR-------FLKYDPY--- 569 (1008)
Q Consensus 508 ~~~~w~rVIiDEAH~iKN~~s~~~kal~~L~--------a~~rllLTGTPi~N~l~DL~sll~-------fL~p~~~--- 569 (1008)
....|.+||+||||.+.+..+........+. ..++++|||||.+++..++...+. .|....+
T Consensus 368 ~l~~~~liViDEaH~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~LSATp~~~~~~~l~~~~~~i~~L~~~L~~~~i~~~ 447 (936)
T 4a2w_A 368 SLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTV 447 (936)
T ss_dssp CGGGCSEEEEETGGGCSTTCHHHHHHHHHHHHHHTTCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECC
T ss_pred CCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEECC
T ss_conf 33678799998731359986699999999998631378867399863885545402089999999999985497155346
Q ss_pred -CHHHHHHHHCCCCCCCC-------CHH---HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEECCCHHHHHH
Q ss_conf -11599997703676668-------656---7899999998866330036545797643699972789993299989999
Q 001834 570 -AVYKSFYSTIKIPISRN-------SLH---GYKKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEWAF 638 (1008)
Q Consensus 570 -~~~~~F~~~~~~pi~~~-------~~~---~~~~L~~~L~~~~lRRtk~~v~~g~p~i~LP~k~~~~v~v~ls~~er~~ 638 (1008)
.....+...+..|.... ... .+..+...+..++-.......+. .++ ...+... .
T Consensus 448 ~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~l~~l~~~i~~~~~~~l~~~~l~-----~~~-------~~~~g~~---~ 512 (936)
T 4a2w_A 448 RENIQELQRFMNKPEIDVRLVKRRIHNPFAAIISNLMSETEALMRTIAYVDTLS-----QNS-------KKDFGTQ---N 512 (936)
T ss_dssp CSSHHHHHHHSCCCCEEEEECCCCSCCHHHHHHHHHHHHHHHHHHHC------------------------CCSSH---H
T ss_pred CCCHHHHHHHCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HCC-------CCCCCHH---H
T ss_conf 544899987536776237733655675799999999999999999887665553-----202-------2332257---7
Q ss_pred HHHHHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHCCCHHHHHHHHHHCCC
Q ss_conf 99999999999999862087--7500899999999987530622111123445321002787403993799999972011
Q 001834 639 YKKLESDSLKKFKAFADAGT--VNQNYANILLMLLRLRQACDHPLLVKEYDFDSVGKISGEMAKRLPRDMLIDLLSRLET 716 (1008)
Q Consensus 639 Y~~l~~~~~~~~~~~~~~g~--~~~~~~~il~~LlrLRq~c~hP~l~~~~~~~~~~~~~~e~~~~l~~~~~~~l~~~le~ 716 (1008)
|................... ....+..+......++.. .+...+ ............+..+-.
T Consensus 513 y~~~l~~l~k~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~-~~al~i---------------~~~~~~~~~~~~l~~~~~ 576 (936)
T 4a2w_A 513 YEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKY-NDALII---------------SEDARIIDALSYLTEFFT 576 (936)
T ss_dssp HHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHHHHHHHH-HHHHHH---------------HHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH-HHHHHH---------------HCCHHHHHHHHHHHHHHH
T ss_conf 9999999999887740553210357999999999999998-888750---------------020428889999999999
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 34423345899999600346952304444321028999999861101236650200101023557999999999943444
Q 001834 717 SSAICCVCSDPPEDSVVTMCGHVFCYQCASEYITGDDNMCPAPRCKEQLGADVVFSKTTLKNCVSDDGGGSPTDSPFADK 796 (1008)
Q Consensus 717 ~~~~C~ic~d~~~~~v~~~cgh~fc~~ci~~~~~~~~~~cp~~~c~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 796 (1008)
...... .+..+.... ..|.. .+. .+..
T Consensus 577 ~~~~~~--~~~~e~~l~----~~~~~-~~~----------------------------~l~~------------------ 603 (936)
T 4a2w_A 577 NVKNGP--YTELEQHLT----AKFQE-KEP----------------------------ELIA------------------ 603 (936)
T ss_dssp HHHHTT--CCHHHHHHH----HHHHH-HHH----------------------------HHHH------------------
T ss_pred HHHHCC--CCHHHHHHH----HHHHH-HHH----------------------------HHHH------------------
T ss_conf 876325--887899999----98999-999----------------------------9997------------------
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHC-
Q ss_conf 6876765541359999999986310146552355520126889876557899999962999905277899999998755-
Q 001834 797 SGILDNEYISSKIRTVLDILHTQCELNTKCSIVEIHDLAGSNGSSAVHSKSPIEGPIKSIVFSQWTRMLDLVENSLNQH- 875 (1008)
Q Consensus 797 ~~~~~~~~~SsKl~~l~elL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvIIFsqft~~ld~L~~~L~~~- 875 (1008)
........++|+..|.++|.+...... +.|+|||++++.+++.|...|...
T Consensus 604 -~~~~~~~~~~K~~~L~~lL~~~~~~~~---------------------------~~rvLIF~~t~~~ae~L~~~L~~~~ 655 (936)
T 4a2w_A 604 -LSKDETNENPKLEELVCILDDAYRYNP---------------------------QTRTLLFAKTRALVSALKKCMEENP 655 (936)
T ss_dssp -HHTSTTCCCHHHHHHHHHHHHTTTSCT---------------------------TCCEEEEESSHHHHHHHHHHHHHCS
T ss_pred -HHHCCCCCCHHHHHHHHHHHHHHCCCC---------------------------CCEEEEEECCHHHHHHHHHHHHHCC
T ss_conf -640567789799999999999853589---------------------------9749999697999999999986373
Q ss_pred -----------CCEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHH
Q ss_conf -----------970899607889789999999751696750899983378755443456798999569999782569978
Q 001834 876 -----------CIQYRRLDGTMSLPARDRAVKDFNTDREQITVMLMSLKAGNLGLNMVAASHVILLDLWWNPTTEDQAVD 944 (1008)
Q Consensus 876 -----------gi~~~~l~Gs~s~~~R~~~i~~F~~~~~~~~VLLiSlkagg~GLNL~~A~~VI~~Dp~WNp~~e~QAig 944 (1008)
|..+..++|+|+..+|.++++.|+.+.. ++||| +|+++++|||++.+++||+||++||+..+.|++|
T Consensus 656 ~l~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~Fr~~g~-~~VLV-aT~~~~eGIDlp~v~~VI~yD~p~s~~~~iQr~G 733 (936)
T 4a2w_A 656 ILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKD-NRLLI-ATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRG 733 (936)
T ss_dssp TTSSCCCEEC----------------------------C-CSEEE-EECC------CCCCSEEEEESCCSCSHHHHCC--
T ss_pred CCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCC-EEEEE-EECCHHCCCCCHHCCEEEEECCCCCHHHHHHHCC
T ss_conf 536666169965787656788899999999998631598-15999-8072642776055898999389998899999648
Q ss_pred HHHHCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 5651398342999999848999999999999999999975168
Q 001834 945 RAHRIGQTRPVTVTRLTIRDTVEDRILKLQDDKRKMVASAFGE 987 (1008)
Q Consensus 945 Rv~RiGQ~k~V~V~rli~~dTiEe~I~~lq~~K~~l~~~~~g~ 987 (1008)
| ||.+++.++.|+..+|+|++.+ ++..|..++..++..
T Consensus 734 R----GR~~~g~vi~Li~~~t~ee~~~-~~~~ke~~~~~~i~~ 771 (936)
T 4a2w_A 734 R----GRAAGSKCILVTSKTEVVENEK-CNRYKEEMMNKAVEK 771 (936)
T ss_dssp ---------CCCEEEEESCHHHHHHHH-HHHHHHHHHHHHHHH
T ss_pred C----CCCCCCEEEEEEECCCHHHHHH-HHHHHHHHHHHHHHH
T ss_conf 7----7888877999986988999999-988999999999998
No 9
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=1.00 E-value=1 Score=316.09 Aligned_cols=475 Identities=14% Similarity=0.163 Sum_probs=265.4
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCHHHHHHHHHHHHCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf 22354102999999998200587766760113889825899999998400112231011114432123667888888876
Q 001834 272 SVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLDDDDDNGNA 351 (1008)
Q Consensus 272 ~~~LrpyQ~~av~wml~~e~~~~~~~GGILADemGLGKTiqaIali~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (1008)
...|+|||..++.+++.. ..+|++++||+|||++++..+......
T Consensus 246 ~~~l~~~Q~~~i~~~l~~-------~~~ll~~~TGsGKTl~~~~~i~~~l~~---------------------------- 290 (797)
T 4a2q_A 246 TKKARSYQIELAQPAING-------KNALICAPTGSGKTFVSILICEHHFQN---------------------------- 290 (797)
T ss_dssp --CCCHHHHHHHHHHHTT-------CCEEEECCTTSCHHHHHHHHHHHHHHT----------------------------
T ss_pred CCCCCHHHHHHHHHHHHC-------CCEEEEECCCCHHHHHHHHHHHHHHHH----------------------------
T ss_conf 899999999999999809-------998999699972999999999999984----------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCH-HHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCC--C
Q ss_conf 643222369889999987666654334788899855999182-3599999999987699998189998389988891--0
Q 001834 352 GLDKVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPA-SVLRQWARELEDKVPDKAALSVLIYHGGSRTKDP--V 428 (1008)
Q Consensus 352 ~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tLIV~P~-sLl~qW~~Ei~k~~~~~~~l~v~vy~g~~r~~~~--~ 428 (1008)
......+.+|||||. +|+.||.+++.++++.. .+++..++|+...... .
T Consensus 291 ---------------------------~~~~~~~~~Lvl~Pt~~L~~Q~~~~~~~~~~~~-~~~v~~~~g~~~~~~~~~~ 342 (797)
T 4a2q_A 291 ---------------------------MPAGRKAKVVFLATKVPVYEQQKNVFKHHFERQ-GYSVQGISGENFSNVSVEK 342 (797)
T ss_dssp ---------------------------CCSSCCCCEEEECSSHHHHHHHHHHHHHHHGGG-TCCEEEECCC-----CHHH
T ss_pred ---------------------------CCCCCCCEEEEEECCHHHHHHHHHHHHHHCCCC-CCEEEEEECCCCHHHHHHH
T ss_conf ---------------------------665679969999698999999999999861437-9469999699623246997
Q ss_pred CCCCCCEEEECHHHHHCCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-
Q ss_conf 1378749996502331027999998646663202765676610223222101221111356788888777765588886-
Q 001834 429 ELAKYDVVLTTYSIVTNEVPKQPSVDEEEADEKNGETYGLSSEFSVNKKRKKISNVSKRGKKGKKGNVNSSIDYGCGPL- 507 (1008)
Q Consensus 429 ~l~~~dVVItTY~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~k~~~~~~~~~k~~~~~~~~~~~~~~~~~L- 507 (1008)
....++|+|+|++.+...... +.+
T Consensus 343 ~~~~~~Ivv~Tp~~l~~~l~~-------------------------------------------------------~~~~ 367 (797)
T 4a2q_A 343 VIEDSDIIVVTPQILVNSFED-------------------------------------------------------GTLT 367 (797)
T ss_dssp HHHTCSEEEECHHHHHHHHHS-------------------------------------------------------SSCC
T ss_pred HHCCCCEEEECHHHHHHHHHH-------------------------------------------------------CCCC
T ss_conf 407999999766999999982-------------------------------------------------------6546
Q ss_pred CCCEEEEEEECCCCCCCCCCCHHHHHHHHCC--------CCCEEEEECCCCCCCHHHHHHHHH-------HHCCCCC---
Q ss_conf 3210209999157534892016999998600--------473799963588798557998999-------8806984---
Q 001834 508 AKVGWFRVVLDEAQTIKNHRTQVARACCSLR--------AKRRWCLSGTPIQNSIDDLYSYFR-------FLKYDPY--- 569 (1008)
Q Consensus 508 ~~~~w~rVIiDEAH~iKN~~s~~~kal~~L~--------a~~rllLTGTPi~N~l~DL~sll~-------fL~p~~~--- 569 (1008)
....|.+||+||||.+.+...........+. ..++++|||||.+++..++...+. .|....+
T Consensus 368 ~~~~~~~iViDEaH~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~lSATp~~~~~~~~~~~~~~i~~l~~~L~~~~i~~~ 447 (797)
T 4a2q_A 368 SLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTV 447 (797)
T ss_dssp CGGGCSEEEETTGGGCSTTSHHHHHHHHHHHHHHTTCCCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECC
T ss_pred CCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEECC
T ss_conf 51337789998863558876499999999997631478878599972775545522489999999999985498488545
Q ss_pred -CHHHHHHHHCCCCCCCC-------CHH---H----HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEECCCHH
Q ss_conf -11599997703676668-------656---7----89999999886633003654579764369997278999329998
Q 001834 570 -AVYKSFYSTIKIPISRN-------SLH---G----YKKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKE 634 (1008)
Q Consensus 570 -~~~~~F~~~~~~pi~~~-------~~~---~----~~~L~~~L~~~~lRRtk~~v~~g~p~i~LP~k~~~~v~v~ls~~ 634 (1008)
.....+...+..|.... ... . ...++.+++.+.- -..+ ..+| ...+..
T Consensus 448 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~----l~~l-----~~~~-------~~~~g~- 510 (797)
T 4a2q_A 448 RENIQELQRFMNKPEIDVRLVKRRIHNPFAAIISNLMSETEALMRTIYS----VDTL-----SQNS-------KKDFGT- 510 (797)
T ss_dssp CTTHHHHHHHSCCCCCEEEECCCCSCCHHHHHHHHHHHHHHHHHHHC----------------------------CCSS-
T ss_pred CCCHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHH----HHHH-----HHHC-------CCCCCC-
T ss_conf 4317889973588854888457777867899999999999999999875----6776-----5300-------001140-
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHCCCHHHHHHHHH
Q ss_conf 999999999999999999862087--750089999999998753062211112344532100278740399379999997
Q 001834 635 EWAFYKKLESDSLKKFKAFADAGT--VNQNYANILLMLLRLRQACDHPLLVKEYDFDSVGKISGEMAKRLPRDMLIDLLS 712 (1008)
Q Consensus 635 er~~Y~~l~~~~~~~~~~~~~~g~--~~~~~~~il~~LlrLRq~c~hP~l~~~~~~~~~~~~~~e~~~~l~~~~~~~l~~ 712 (1008)
..|................... ....+..+......|+.... ...+ ............+.
T Consensus 511 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~-~~~~---------------~~~~~~~~~~~~l~ 572 (797)
T 4a2q_A 511 --QNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYND-ALII---------------SEDARIIDALSYLT 572 (797)
T ss_dssp --HHHHHHHHHHHHHHHHCCCSSHHHHHHHHHHHHHHHHHHHHHHH-HHHH---------------HHHSCHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHH-HHHH---------------HCCCCHHHHHHHHH
T ss_conf --56778999999987774034320256799999999999999998-8765---------------41325888999999
Q ss_pred HCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCC
Q ss_conf 20113442334589999960034695230444432102899999986110123665020010102355799999999994
Q 001834 713 RLETSSAICCVCSDPPEDSVVTMCGHVFCYQCASEYITGDDNMCPAPRCKEQLGADVVFSKTTLKNCVSDDGGGSPTDSP 792 (1008)
Q Consensus 713 ~le~~~~~C~ic~d~~~~~v~~~cgh~fc~~ci~~~~~~~~~~cp~~~c~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~ 792 (1008)
.. | ....... .. .....+.....-....+..
T Consensus 573 ~~--------------------------~----~~~~~~~----~~-~~~~~l~~~~~~~~~~l~~-------------- 603 (797)
T 4a2q_A 573 EF--------------------------F----TNVKNGP----YT-ELEQHLTAKFQEKEPELIA-------------- 603 (797)
T ss_dssp HH--------------------------H----HHHHHTT----CC-HHHHHHHHHHHTTHHHHHH--------------
T ss_pred HH--------------------------H----HHHHCCC----CC-HHHHHHHHHHHHHHHHHHH--------------
T ss_conf 99--------------------------9----9875047----66-8999999999999999987--------------
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHH
Q ss_conf 34446876765541359999999986310146552355520126889876557899999962999905277899999998
Q 001834 793 FADKSGILDNEYISSKIRTVLDILHTQCELNTKCSIVEIHDLAGSNGSSAVHSKSPIEGPIKSIVFSQWTRMLDLVENSL 872 (1008)
Q Consensus 793 ~~~~~~~~~~~~~SsKl~~l~elL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvIIFsqft~~ld~L~~~L 872 (1008)
........++|+..|.++|.+...... +.|+||||+++.+++.|...|
T Consensus 604 -----~~~~~~~~~~K~~~L~~lL~~~~~~~~---------------------------~~kvLIF~~~~~~~~~L~~~L 651 (797)
T 4a2q_A 604 -----LSKDETNENPKLEELVCILDDAYRYNP---------------------------QTRTLLFAKTRALVSALKKCM 651 (797)
T ss_dssp -----HHHCTTCCCHHHHHHHHHHHHHHHHCS---------------------------SCCEEEEESSHHHHHHHHHHH
T ss_pred -----HHCCCCCCCHHHHHHHHHHHHHHCCCC---------------------------CCEEEEEECCHHHHHHHHHHH
T ss_conf -----630788899599999999999850589---------------------------970899979589999999999
Q ss_pred HHC------------CCEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCEEEEECCCCCCCHHH
Q ss_conf 755------------97089960788978999999975169675089998337875544345679899956999978256
Q 001834 873 NQH------------CIQYRRLDGTMSLPARDRAVKDFNTDREQITVMLMSLKAGNLGLNMVAASHVILLDLWWNPTTED 940 (1008)
Q Consensus 873 ~~~------------gi~~~~l~Gs~s~~~R~~~i~~F~~~~~~~~VLLiSlkagg~GLNL~~A~~VI~~Dp~WNp~~e~ 940 (1008)
... |..+..++|+|+..+|..+++.|+++.. ++||| +|+++++|||++.+++||+||++|||..+.
T Consensus 652 ~~~~~~~~~~~~~l~G~~~~~~hg~~~~~eR~~~l~~F~~~g~-~~vLV-aT~~~~~GIDlp~v~~VI~yd~p~s~~~~i 729 (797)
T 4a2q_A 652 EENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKD-NRLLI-ATSVADEGIDIVQCNLVVLYEYSGNVTKMI 729 (797)
T ss_dssp HTCSTTCSCCCEEC----------------------------C-CSEEE-EECC-------CCCSEEEEESCCSCHHHHH
T ss_pred HHCCCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCC-CEEEE-ECCCHHCCCCCHHCCEEEEECCCCCHHHHH
T ss_conf 7475646655218984477545789899999999998513697-04999-748054479751089899948999889999
Q ss_pred HHHHHHHHCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 99785651398342999999848999999999999999999975168
Q 001834 941 QAVDRAHRIGQTRPVTVTRLTIRDTVEDRILKLQDDKRKMVASAFGE 987 (1008)
Q Consensus 941 QAigRv~RiGQ~k~V~V~rli~~dTiEe~I~~lq~~K~~l~~~~~g~ 987 (1008)
|++|| ||.+++.++.|+..+++|++ +.++..|..++..++..
T Consensus 730 Qr~GR----GR~~~g~~i~l~~~~~~ee~-~~~~~~ke~~~~~~i~~ 771 (797)
T 4a2q_A 730 QVRGR----GRAAGSKCILVTSKTEVVEN-EKCNRYKEEMMNKAVEK 771 (797)
T ss_dssp TC-----------CCCEEEEECCHHHHHH-HHHHHHHHHHHHHHHHH
T ss_pred HHCCC----CCCCCCEEEEEEECCCHHHH-HHHHHHHHHHHHHHHHH
T ss_conf 85388----87878659999728768899-99888999999999998
No 10
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=1.00 E-value=1 Score=312.14 Aligned_cols=485 Identities=13% Similarity=0.151 Sum_probs=268.2
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCHHHHHHHHHHHHCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf 22354102999999998200587766760113889825899999998400112231011114432123667888888876
Q 001834 272 SVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLDDDDDNGNA 351 (1008)
Q Consensus 272 ~~~LrpyQ~~av~wml~~e~~~~~~~GGILADemGLGKTiqaIali~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (1008)
..+|+|||.+++.+++.. ..+|+++++|+|||++++..+......
T Consensus 5 ~~~~~~~Q~~~i~~~~~~-------~~~l~~~~tGsGKT~~~~~~~~~~~~~---------------------------- 49 (556)
T 4a2p_A 5 TKKARSYQIELAQPAING-------KNALICAPTGSGKTFVSILICEHHFQN---------------------------- 49 (556)
T ss_dssp ---CCHHHHHHHHHHHTT-------CCEEEECCTTSCHHHHHHHHHHHHHHT----------------------------
T ss_pred CCCCCHHHHHHHHHHHCC-------CCEEEECCCCCHHHHHHHHHHHHHHHH----------------------------
T ss_conf 778779999999999749-------989998199971899999999999983----------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCH-HHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCC--C
Q ss_conf 643222369889999987666654334788899855999182-3599999999987699998189998389988891--0
Q 001834 352 GLDKVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPA-SVLRQWARELEDKVPDKAALSVLIYHGGSRTKDP--V 428 (1008)
Q Consensus 352 ~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tLIV~P~-sLl~qW~~Ei~k~~~~~~~l~v~vy~g~~r~~~~--~ 428 (1008)
......+.+|||||. +|..||.+++.++++.. .+++..++|....... .
T Consensus 50 ---------------------------~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~ 101 (556)
T 4a2p_A 50 ---------------------------MPAGRKAKVVFLATKVPVYEQQKNVFKHHFERQ-GYSVQGISGENFSNVSVEK 101 (556)
T ss_dssp ---------------------------CCSSCCCCEEEECSSHHHHHHHHHHHHHHHGGG-TCCEEECCCC-----CHHH
T ss_pred ---------------------------CCCCCCCEEEEEECCHHHHHHHHHHHHHHHCCC-CCEEEEEECCCCCCHHHHH
T ss_conf ---------------------------745679869999288999999999999872406-9459998289874222898
Q ss_pred CCCCCCEEEECHHHHHCCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-
Q ss_conf 1378749996502331027999998646663202765676610223222101221111356788888777765588886-
Q 001834 429 ELAKYDVVLTTYSIVTNEVPKQPSVDEEEADEKNGETYGLSSEFSVNKKRKKISNVSKRGKKGKKGNVNSSIDYGCGPL- 507 (1008)
Q Consensus 429 ~l~~~dVVItTY~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~k~~~~~~~~~k~~~~~~~~~~~~~~~~~L- 507 (1008)
....++|+|+|++.+...... +.+
T Consensus 102 ~~~~~~i~v~T~~~l~~~~~~-------------------------------------------------------~~~~ 126 (556)
T 4a2p_A 102 VIEDSDIIVVTPQILVNSFED-------------------------------------------------------GTLT 126 (556)
T ss_dssp HHHHCSEEEECHHHHHHHHHS-------------------------------------------------------SSCC
T ss_pred HHCCCCEEEECHHHHHHHHHH-------------------------------------------------------CCCC
T ss_conf 617999999889999999983-------------------------------------------------------7502
Q ss_pred CCCEEEEEEECCCCCCCCCCCHHHHHHHHC--------CCCCEEEEECCCCCCCHHHHH-------HHHHHHCCCCC---
Q ss_conf 321020999915753489201699999860--------047379996358879855799-------89998806984---
Q 001834 508 AKVGWFRVVLDEAQTIKNHRTQVARACCSL--------RAKRRWCLSGTPIQNSIDDLY-------SYFRFLKYDPY--- 569 (1008)
Q Consensus 508 ~~~~w~rVIiDEAH~iKN~~s~~~kal~~L--------~a~~rllLTGTPi~N~l~DL~-------sll~fL~p~~~--- 569 (1008)
....|.+||+||||.+.+...........+ ...++++|||||..++..++. .+...|....+
T Consensus 127 ~~~~~~~vViDEah~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~ 206 (556)
T 4a2p_A 127 SLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTV 206 (556)
T ss_dssp CSTTCSEEEEETGGGCSTTSHHHHHHHHHHHHHHCC---CCEEEEEESCCCCTTCSSHHHHHHHHHHHHHHHTCSEEECC
T ss_pred CCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEECCH
T ss_conf 50307799998875358864599999999985301368887699994785667516699999999999985398484333
Q ss_pred -CHHHHHHHHCCCCCCCC-------CHH---HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEECCCHHHHHH
Q ss_conf -11599997703676668-------656---7899999998866330036545797643699972789993299989999
Q 001834 570 -AVYKSFYSTIKIPISRN-------SLH---GYKKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEWAF 638 (1008)
Q Consensus 570 -~~~~~F~~~~~~pi~~~-------~~~---~~~~L~~~L~~~~lRRtk~~v~~g~p~i~LP~k~~~~v~v~ls~~er~~ 638 (1008)
.....+...+..|.... ... ....+...+..++-....-..+ ..++ ...+.. ..
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~-------~~~~g~---~~ 271 (556)
T 4a2p_A 207 RENIQELQRFMNKPEIDVRLVKRRIHNPFAAIISNLMSETEALMRTIYSVDTL-----SQNS-------KKDFGT---QN 271 (556)
T ss_dssp CTTHHHHHHHTCCCCEEEEECCCCSCCHHHHHHHHHHHHHHHHHHHHCC---------------------CCCSS---HH
T ss_pred HCCHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH-----HCCC-------CCCCCH---HH
T ss_conf 20267787427998537998278767759999999999999999888632012-----1033-------334433---56
Q ss_pred HHHHHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHCCCHHHHH----HHHH
Q ss_conf 9999999999999986208--775008999999999875306221111234453210027874039937999----9997
Q 001834 639 YKKLESDSLKKFKAFADAG--TVNQNYANILLMLLRLRQACDHPLLVKEYDFDSVGKISGEMAKRLPRDMLI----DLLS 712 (1008)
Q Consensus 639 Y~~l~~~~~~~~~~~~~~g--~~~~~~~~il~~LlrLRq~c~hP~l~~~~~~~~~~~~~~e~~~~l~~~~~~----~l~~ 712 (1008)
|.................. .....+..+......++.. .+...+ .......... .+..
T Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~---------------~~~~~~~~~~~~l~~~~~ 335 (556)
T 4a2p_A 272 YEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKY-NDALII---------------SEDARIIDALSYLTEFFT 335 (556)
T ss_dssp HHHHHHHHHHHHHHC---CHHHHHHHHHHHHHHHHHHHHH-HHHHHH---------------HHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH-HHHHHH---------------HHHHHHHHHHHHHHHHHH
T ss_conf 7899999999877640543201678999999999999999-999988---------------611207899999999999
Q ss_pred HCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCC
Q ss_conf 20113442334589999960034695230444432102899999986110123665020010102355799999999994
Q 001834 713 RLETSSAICCVCSDPPEDSVVTMCGHVFCYQCASEYITGDDNMCPAPRCKEQLGADVVFSKTTLKNCVSDDGGGSPTDSP 792 (1008)
Q Consensus 713 ~le~~~~~C~ic~d~~~~~v~~~cgh~fc~~ci~~~~~~~~~~cp~~~c~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~ 792 (1008)
.+.... .+.. -......+.. ....+..
T Consensus 336 ~~~~~~------~~~~------------~~~~~~~~~~---------------------~~~~l~~-------------- 362 (556)
T 4a2p_A 336 NVKNGP------YTEL------------EQHLTAKFQE---------------------KEPELIA-------------- 362 (556)
T ss_dssp HHHHSC------CCHH------------HHHHHHHHHT---------------------THHHHHH--------------
T ss_pred HHHHCC------CCHH------------HHHHHHHHHH---------------------HHHHHHH--------------
T ss_conf 987337------9878------------9999998766---------------------7887642--------------
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHH
Q ss_conf 34446876765541359999999986310146552355520126889876557899999962999905277899999998
Q 001834 793 FADKSGILDNEYISSKIRTVLDILHTQCELNTKCSIVEIHDLAGSNGSSAVHSKSPIEGPIKSIVFSQWTRMLDLVENSL 872 (1008)
Q Consensus 793 ~~~~~~~~~~~~~SsKl~~l~elL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvIIFsqft~~ld~L~~~L 872 (1008)
........++|+..+.++|.+...... +.|+|||++++.+++.|...|
T Consensus 363 -----~~~~~~~~~~K~~~L~~~l~~~~~~~~---------------------------~~k~lVF~~~~~~~~~l~~~L 410 (556)
T 4a2p_A 363 -----LSKDETNENPKLEELVCILDDAYRYNP---------------------------QTRTLLFAKTRALVSALKKCM 410 (556)
T ss_dssp -----HHHCSSSCCHHHHHHHHHHHHHHHHCT---------------------------TCCEEEEESSHHHHHHHHHHH
T ss_pred -----HCCCCCCCCHHHHHHHHHHHHHHCCCC---------------------------CCEEEEEECCHHHHHHHHHHH
T ss_conf -----103789999699999999999834799---------------------------854999976589999999999
Q ss_pred HHC------------CCEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCEEEEECCCCCCCHHH
Q ss_conf 755------------97089960788978999999975169675089998337875544345679899956999978256
Q 001834 873 NQH------------CIQYRRLDGTMSLPARDRAVKDFNTDREQITVMLMSLKAGNLGLNMVAASHVILLDLWWNPTTED 940 (1008)
Q Consensus 873 ~~~------------gi~~~~l~Gs~s~~~R~~~i~~F~~~~~~~~VLLiSlkagg~GLNL~~A~~VI~~Dp~WNp~~e~ 940 (1008)
... |..+..++|+|+..+|.++++.|+++.. ++||+ +|+++++|||++.+++||+||++|||....
T Consensus 411 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~-~~vLv-aT~~~~~GiDip~v~~VI~~d~p~s~~~~~ 488 (556)
T 4a2p_A 411 EENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKD-NRLLI-ATSVADEGIDIVQCNLVVLYEYSGNVTKMI 488 (556)
T ss_dssp TTCSGGGSCCEEC-------------------------------CCEEE-EEC-----------CEEEEETCCSCHHHHH
T ss_pred HHCCCCCEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHCCCCC-EEEEE-ECCCHHCCCCCHHCCEEEEECCCCCHHHHH
T ss_conf 8587755000147873677655656698999999998404696-58999-767043377752178899918999788998
Q ss_pred HHHHHHHHCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHH
Q ss_conf 997856513983429999998489999999999999999999751688899866678999999
Q 001834 941 QAVDRAHRIGQTRPVTVTRLTIRDTVEDRILKLQDDKRKMVASAFGEDQGGGTASRLTVEDLR 1003 (1008)
Q Consensus 941 QAigRv~RiGQ~k~V~V~rli~~dTiEe~I~~lq~~K~~l~~~~~g~~~~~~~~~~l~~edl~ 1003 (1008)
|++|| ||.+++.++.|+.++++|++ +.++..|..++..++..- ..+..+++.
T Consensus 489 Qr~GR----gR~~~g~~~~l~~~~~~~~~-~~~~~~k~~~~~~~i~~i------~~~~~~~~~ 540 (556)
T 4a2p_A 489 QVRGR----GRAAGSKCILVTSKTEVVEN-EKCNRYKEEMMNKAVEKI------QKWDEETFA 540 (556)
T ss_dssp HC------------CCEEEEESCHHHHHH-HHHHHHHHHHHHHHHHHH------HTSCHHHHH
T ss_pred HHCCC----CCCCCCEEEEEEECCCHHHH-HHHHHHHHHHHHHHHHHH------HCCCHHHHH
T ss_conf 86387----87888418999827636777-775579999999999972------068967899
Done!