Query 001837
Match_columns 1007
No_of_seqs 278 out of 3031
Neff 6.6
Searched_HMMs 29240
Date Tue Mar 26 15:48:35 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/001837.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1135-1139//hhsearch_pdb/001837hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3j09_A COPA, copper-exporting 1.0 1 1 933.6 47.6 680 11-702 3-718 (723)
2 3rfu_A Copper efflux ATPase; a 1.0 1 1 869.7 53.8 576 117-699 122-735 (736)
3 3j08_A COPA, copper-exporting 1.0 1 1 829.4 38.4 575 117-702 40-640 (645)
4 3b8c_A ATPase 2, plasma membra 1.0 1 1 741.0 -6.0 558 66-662 31-655 (885)
5 1mhs_A Proton pump, plasma mem 1.0 1 1 739.6 43.1 578 67-687 87-735 (920)
6 2zxe_A Na, K-ATPase alpha subu 1.0 1 1 710.5 49.0 609 57-691 49-830 (1028)
7 3ixz_A Potassium-transporting 1.0 1 1 703.4 53.0 619 58-702 55-848 (1034)
8 3ar4_A Sarcoplasmic/endoplasmi 1.0 1 1 694.9 52.0 613 60-701 9-823 (995)
9 2yj3_A Copper-transporting ATP 1.0 1 1 306.6 0.0 259 364-652 4-263 (263)
10 3skx_A Copper-exporting P-type 1.0 1 1 249.5 26.8 277 376-659 1-277 (280)
No 1
>3j09_A COPA, copper-exporting P-type ATPase A; copper transporter, adenosine triphosph archaeal proteins, cation transport proteins; 10.00A {Archaeoglobus fulgidus}
Probab=1.00 E-value=1 Score=933.55 Aligned_cols=680 Identities=30% Similarity=0.448 Sum_probs=604.7
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHCCCCEEEEEEECCCCEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCC--C-C
Q ss_conf 999995299991079999998718999139999627986999976985368999998420000111002466544--5-6
Q 001837 11 KSYFDVLGICCSSEVPLIENILKSLEGVKEVSVIVPSRTVIVLHDALLISQHQIVKALNQARFEANVRAYGGTSY--Q-K 87 (1007)
Q Consensus 11 ~~~l~I~Gl~C~~Ca~~IE~~L~~l~GV~~v~Vn~~t~tv~V~~d~~~~s~~~I~~aL~~~gy~a~~~~~g~~~~--~-~ 87 (1007)
+..|.|+||+|++|++.||+.+++++||.++++|+.++++.|.||+...+.+++.+.+++.||++.......... . .
T Consensus 3 ~~~l~V~GM~Ca~Ca~~Ie~~L~~~~GV~~v~Vnl~~~~~~V~~d~~~~~~~~i~~ai~~~Gy~~~~~~~~~~~~~~~~~ 82 (723)
T 3j09_A 3 ERTVRVTGMTCAMCVKSIETAVGSLEGVEEVRVNLATETAFIRFDEKRIDFETIKRVIEDLGYGVVDEQAAVSAEVEHLS 82 (723)
T ss_dssp CEEEEEETCCSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEECTTTCCHHHHHHHHHHHCCEESSCCCCCCCCCCCCC
T ss_pred EEEEEECCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHH
T ss_conf 69998589896689999999984599953899975787799984788689999999998438765432111101168899
Q ss_pred CCCCHHHH---HHHHHHHHHHHHHHHHHHHH----HHHHHHHHCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH-
Q ss_conf 78813799---99999999999983202789----87776665048999999999972732188999999988874344-
Q 001837 88 KWPSPYAM---ACGVLLAISILKYVYHPLRW----FALGAVAIGIFPIILKGLAAIRNFKLDINILVLIAVIGTIAMND- 159 (1007)
Q Consensus 88 ~~~~~~~~---~~gill~~~l~~~~~~~l~~----l~l~~~~~~~~p~~~~a~~~lr~~~l~i~~Li~iai~~a~~~~~- 159 (1007)
.+...++. ++..+++++++. +++.+.| +++++++++++||++++|+++++++++||+|++++++++++++.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~g~~~~~~a~~~l~~~~~~md~l~~l~~~~a~~~s~~ 161 (723)
T 3j09_A 83 RMKRKLYVAAFAGVLLLFLAHFI-SLPYEDFVQLLIALPAIFYSGSSIFKAAFSALRRRTLNMDVMYSMGVGAAFLASVL 161 (723)
T ss_dssp CSCCCSSSTTTTHHHHHHHTTSS-CSSSSCCSCCSTHHHHHHHHHHHHHHHTCCTTTTCSTTSCSSCSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999974-03237899999999999996899999999999818898299999999999999999
Q ss_pred -----------HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCC--EEEECCCCCCCCEEEEECCC
Q ss_conf -----------79-99999999999999999999899999998640187616992199--89618885559399982897
Q 001837 160 -----------YI-EAGIIVFLFTIAEWLESRASHKATAVMSSLMSIAPQKAIIAGTG--EEVDAGEVKLNTVLAVKAGE 225 (1007)
Q Consensus 160 -----------y~-~a~~Il~l~~i~~~le~~~~~k~~~~l~~L~~~~p~~v~v~rdg--~~V~~~dLv~GDII~I~~Ge 225 (1007)
|+ .++++++++.+++++|.++++|+++.+++++++.|.+++|+|+| ++|++++|+|||+|+|++||
T Consensus 162 ~~~~~~~~~~~~~~~~~~i~~~~~ig~~le~~~~~~~~~~i~~l~~l~~~~a~v~r~g~~~~i~~~~l~~GDiv~v~~Ge 241 (723)
T 3j09_A 162 STAGVLPREYSFYETSVLLLAFLLLGRTLEARAKSRTGEAIKKLVGLQAKTAVVIRDGKEIAVPVEEVAVGDIVIVRPGE 241 (723)
T ss_dssp HHHTTTTCCCCCCTTHHHHHHHHHHHHHHHHHHHTTCCCTTHHHHHTSCSEEEEEETTEEEEEEGGGCCTTCEEEECTTC
T ss_pred HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCEEEEEEHHHCCCCCEEEECCCC
T ss_conf 99851466323999999999999999999999999999999888726997569998998999898997999899988999
Q ss_pred CCCCCEEEEECEEEEECCCCCCCCEEEEECCCCEEEECEEEEEEEEEEEEEEEECCEEEEHHHHHHHHHHCCCHHHHHHH
Q ss_conf 22541899932033323558898701682489824310088431099999997065077025877999620202899999
Q 001837 226 VIPIDGIVVDGKCEVDEKTLTGESYPVSKQKGSTVWAGTINLNGYISVETTAVAEDCVVAKMAKLVEEAQNSKSRIQRFV 305 (1007)
Q Consensus 226 ~IPaDgiIl~G~~~VDES~LTGES~pv~K~~g~~V~aGT~v~~G~~~~~V~~tG~~T~~~ki~~lv~~a~~~ks~~q~~~ 305 (1007)
+|||||+|++|++.||||.|||||.|+.|++|+.||+||.+.+|.++++|+++|.+|.++++.+++++++.+++++|+.+
T Consensus 242 ~IPaDg~vl~G~~~VdeS~LTGES~pv~K~~g~~v~~Gt~~~~g~~~~~v~~~g~~T~l~~i~~lv~~a~~~k~~~~~~~ 321 (723)
T 3j09_A 242 KIPVDGVVVEGESYVDESMISGEPVPVLKSKGDEVFGATINNTGVLKIRATRVGGETLLAQIVKLVEDAMGSKPPIQRLA 321 (723)
T ss_dssp BCCSEEEEEECCEEEECHHHHCCSSCEEECTTCEECTTCEECSSCEEEEEEECGGGSHHHHHHHHHSSSCCSCCHHHHHH
T ss_pred EEEEEEEEEECCEEEECCCCCCCCCCEEECCCCEECCCEEEECCCEEEEEEEECCCCHHHHHHHHHHHHHCCCCHHHHHH
T ss_conf 88567999977768860001388764663689823041697067299999984674399999999997534698389999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHC
Q ss_conf 89987576999999999999888715886567898875445210344312447999999999997739811122366430
Q 001837 306 DKFSQYYTPAVIFISACVAVIPIALGVSNHKQWFHLALVVLVSACPCALILSTPVVTYCALTKAATSGLLIKGGDYLQTL 385 (1007)
Q Consensus 306 ~~ia~~~~~ivliiali~~ii~~~~~~~~~~~~~~~ai~vLi~a~P~aL~la~~ia~~~a~~~l~k~gilvk~~~~lE~L 385 (1007)
++++.+|++++++++++.+++|++....++..++.+++++++++|||+|++++|+++..++.+++++|+++|++.++|+|
T Consensus 322 d~~~~~~~~~vl~~a~~~~~~~~~~~~~~~~~~~~~~i~vlvia~P~aL~la~p~a~~~~~~~~a~~gilvk~~~~lE~l 401 (723)
T 3j09_A 322 DKVVAYFIPTVLLVAISAFIYWYFIAHAPLLFAFTTLIAVLVVACPCAFGLATPTALTVGMGKGAELGILIKNADALEVA 401 (723)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSCSSTTCTTCCSHHHHHHHHHHHSCTTHHHHHHHHHHHHHHHHHTTTCEESSTTHHHHG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECHHHHHHH
T ss_conf 99999999999999999999999856886999999999999750267899999999999999999889389482899876
Q ss_pred CCCCEEEECCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCCEECCCC
Q ss_conf 47439974276541029349999623887789899999999421029994899999983617999998775551000598
Q 001837 386 AKVRFMAFDKTGTITRGEFVMSEFQPLSEDINLNTLLYWVSSIESKSSHPMSAALVEYGRSLSIEPKPEDVEDYQNFPGE 465 (1007)
Q Consensus 386 g~Vd~I~fDKTGTLT~~~m~v~~i~~~~~~~~~~~lL~~aa~~e~~s~hPi~~AI~~~a~~~g~~~~~~~v~~~~~~~g~ 465 (1007)
|++|+||||||||||+|+|++.++.+.+ .+.++++.+++.++..+.||+++|+++++...++.. ....+++..+|.
T Consensus 402 g~v~~i~fDKTGTLT~g~~~v~~~~~~~--~~~~~~l~~aa~~e~~s~hP~~~Ai~~~a~~~~~~~--~~~~~~~~~~g~ 477 (723)
T 3j09_A 402 EKVTAVIFDKTGTLTKGKPEVTDLVPLN--GDERELLRLAAIAERRSEHPIAEAIVKKALEHGIEL--GEPEKVEVIAGE 477 (723)
T ss_dssp GGCCEEEEEHHHHTSCSCCEEEEEEESS--SCHHHHHHHHHHHHTTCCSHHHHHHHHHHHHTTCCC--CSCCCCEEETTT
T ss_pred HCCCEEEECCCCCCCCCCEEEEEEEECC--CCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCC--CCCCCEEEECCC
T ss_conf 2498999847775526962799998079--998999999999850499954289999998549985--786445996698
Q ss_pred CEEEEECCEEEEEECHHHHHHHCCCCCCC----CCCCCCCCCEEEEEEECCEEEEEEEECCCCCCCHHHHHHHHHHCCCE
Q ss_conf 23999988999970488899809999888----67967799729999879979999994274311199999999978991
Q 001837 466 GIYGKIGGEEIYIGNRKIAQRAGCGTVPS----VDGPKMKGNTIGYIFSGASPVGIFCLSDACRTGAAEAVNQLKSLGIR 541 (1007)
Q Consensus 466 Gi~~~i~g~~i~ig~~~~~~~~~~~~~~~----~~~~~~~g~~vi~va~d~~~lGli~l~D~lR~~a~~aI~~Lk~~GI~ 541 (1007)
|+.+ ..+.+|+++++...+...... .+.+..+|.++++++.|++++|+++++|++||+++++|++|+++|++
T Consensus 478 g~~~----~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~va~~~~~~G~i~i~D~~~~~~~~~i~~l~~~Gi~ 553 (723)
T 3j09_A 478 GVVA----DGILVGNKRLMEDFGVAVSNEVELALEKLEREAKTAVIVARNGRVEGIIAVSDTLKESAKPAVQELKRMGIK 553 (723)
T ss_dssp EEEE----TTEEEECHHHHHHTTCCCCHHHHHHHHHHHTTTCEEEEEEETTEEEEEEEEECCSCTTHHHHHHHHHHTTCE
T ss_pred CEEE----EEEEECCHHHHHHCCCCCCHHHHHHHHHHHHCCCEEEEEEECCEEEEEEEECCCCCHHHHHHHHHHHHCCCE
T ss_conf 1699----999977899997549986089999999998559828999789999999960687525699999999977997
Q ss_pred EEEECCCCHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHHCCEEEEECCCCCCHHHHHHCCEEEEECCCCCHHHHH
Q ss_conf 99991899999999999919996519831698679999999753890999919946999876199319928999687885
Q 001837 542 TAMLTGDNQSAAMQAQEQLGNALNVVHSELLPEDKAKIINQFKQEGKTAMIGDGINDAPALATADIGISMGISGSALATE 621 (1007)
Q Consensus 542 v~ilTGD~~~ta~~ia~~lGi~~~~v~a~~~Pe~K~~iI~~lq~~g~VamVGDG~ND~~aL~~AdVGIa~g~~g~~~a~~ 621 (1007)
++|+|||+..++..+++++|++ .++++++|++|..+++.+|+...|+|+|||.||+|||++||+||+|| +|++.+++
T Consensus 554 v~~~TGd~~~~a~~ia~~lgi~--~~~~~~~P~~K~~~v~~l~~~~~v~~vGDg~ND~~al~~A~vgiamg-~g~~~a~~ 630 (723)
T 3j09_A 554 VGMITGDNWRSAEAISRELNLD--LVIAEVLPHQKSEEVKKLQAKEVVAFVGDGINDAPALAQADLGIAVG-SGSDVAVE 630 (723)
T ss_dssp EEEECSSCHHHHHHHHHHHTCS--EEECSCCTTCHHHHHHHHTTTCCEEEEECSSTTHHHHHHSSEEEECC-CCSCCSSC
T ss_pred EEEECCCCHHHHHHHHHHCCCC--EEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCEEEEEC-CCCHHHHH
T ss_conf 9999998989999999985993--89926899999999999834993999989823099995499879967-87599998
Q ss_pred HCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 0499991699361999999999999999999999999999999999965-------689999999988989999995342
Q 001837 622 TGQVILMSNDIRKVPEAIRLARKAHWKVIENIAVSIATKAGIIALALGG-------HPLVWAAVLADVGTCLIVILNSML 694 (1007)
Q Consensus 622 ~ADivl~~~~l~~I~~~I~~gR~~~~~i~~ni~~al~~nii~i~la~~g-------~~~l~~a~l~~~~~~llvvlNS~r 694 (1007)
+||++++++++..++.++.+||++++++++|+.|+++||+++++++++| +++||.+.+.+.++++++++||+|
T Consensus 631 ~AD~vl~~~~~~~i~~~i~~~r~~~~~i~~nl~~a~~~n~~~i~~a~~~~~~~~g~~l~p~~a~~~m~~ss~~vv~nslr 710 (723)
T 3j09_A 631 SGDIVLIRDDLRDVVAAIQLSRKTMSKIKQNIFWALIYNVILIPAAAGLLYPIFGVVFRPEFAGLAMAMSSVSVVANSLL 710 (723)
T ss_dssp CSSEECSSCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCCCCSCCHHHHHHHHHTHHHHHHHHTTS
T ss_pred HCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCHHHHHHHHHH
T ss_conf 69999967998899999999999999999999999999999999999756540155148899999981548999997787
Q ss_pred HCCCCCCC
Q ss_conf 10224689
Q 001837 695 LLHETHTH 702 (1007)
Q Consensus 695 ll~~~~~~ 702 (1007)
+++.+|+.
T Consensus 711 l~~~~~~~ 718 (723)
T 3j09_A 711 LRNYVPPI 718 (723)
T ss_dssp CCCCSCST
T ss_pred HCCCCCCH
T ss_conf 52679841
No 2
>3rfu_A Copper efflux ATPase; alpha helical, CPC, CXXC, ATP-binding, hydrolase, ION transp magnesium, Cu+, membrane, metal-binding; 3.20A {Legionella pneumophila subsp}
Probab=1.00 E-value=1 Score=869.66 Aligned_cols=576 Identities=31% Similarity=0.506 Sum_probs=537.1
Q ss_pred HHHHHHHCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH----------------------HHHHHHH-HHHHHHHHH
Q ss_conf 77766650489999999999727321889999999888743----------------------4479999-999999999
Q 001837 117 ALGAVAIGIFPIILKGLAAIRNFKLDINILVLIAVIGTIAM----------------------NDYIEAG-IIVFLFTIA 173 (1007)
Q Consensus 117 ~l~~~~~~~~p~~~~a~~~lr~~~l~i~~Li~iai~~a~~~----------------------~~y~~a~-~Il~l~~i~ 173 (1007)
++++++++++|||+++|++++++.++||+|+++++.+++++ +.|++++ +++++++++
T Consensus 122 ~~~v~~~~g~~f~~~a~~~l~~~~~~md~Lv~l~~~~a~~~S~~~~~~~~~~~~~~~~~~~~~~~yfe~a~~ii~~~llg 201 (736)
T 3rfu_A 122 ATPVVLWGGWPFFKRGWQSLKTGQLNMFTLIAMGIGVAWIYSMVAVLWPGVFPHAFRSQEGVVAVYFEAAAVITTLVLLG 201 (736)
T ss_dssp HHHHHHTTTHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHHCGGGSCSSSSCSSSCCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 99999995389999999999855897599999999999999999986310044200135676430899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCEEEEC-CC--EEEECCCCCCCCEEEEECCCCCCCCEEEEECEEEEECCCCCCCCE
Q ss_conf 999999998999999986401876169921-99--896188855593999828972254189993203332355889870
Q 001837 174 EWLESRASHKATAVMSSLMSIAPQKAIIAG-TG--EEVDAGEVKLNTVLAVKAGEVIPIDGIVVDGKCEVDEKTLTGESY 250 (1007)
Q Consensus 174 ~~le~~~~~k~~~~l~~L~~~~p~~v~v~r-dg--~~V~~~dLv~GDII~I~~Ge~IPaDgiIl~G~~~VDES~LTGES~ 250 (1007)
+|+|.++++|+.+.+++|+++.|.+++++| +| ++|++++|+|||+|+|++||+|||||+|++|++.||||.|||||.
T Consensus 202 ~~le~~a~~~~~~ai~~L~~l~p~~a~vv~~dg~~~~v~~~~l~~GDiv~v~~Ge~IPaDg~vl~G~~~VDES~LTGES~ 281 (736)
T 3rfu_A 202 QVLELKAREQTGSAIRALLKLVPESAHRIKEDGSEEEVSLDNVAVGDLLRVRPGEKIPVDGEVQEGRSFVDESMVTGEPI 281 (736)
T ss_dssp HHHHHHHHCCCSSHHHHHTCCCCCEEEEEETTEEEEEEETTTCCTTCEECCCSSEECCSCEEECSSCEEEECSSSTTCSS
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCEEEEEEHHHCCCCCEEEECCCCCCCCCEEEEECCEEEEECCCCCCCC
T ss_conf 99999999999999999883399889999529989998776689898899879975156379997866765123578614
Q ss_pred EEEECCCCEEEECEEEEEEEEEEEEEEEECCEEEEHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 16824898243100884310999999970650770258779996202028999998998757699999999999988871
Q 001837 251 PVSKQKGSTVWAGTINLNGYISVETTAVAEDCVVAKMAKLVEEAQNSKSRIQRFVDKFSQYYTPAVIFISACVAVIPIAL 330 (1007)
Q Consensus 251 pv~K~~g~~V~aGT~v~~G~~~~~V~~tG~~T~~~ki~~lv~~a~~~ks~~q~~~~~ia~~~~~ivliiali~~ii~~~~ 330 (1007)
|+.|.+|+.|++||.+.+|.++++|+++|.+|.+++|.+++++++.+++++|+.+++++.+|++++++++++.+++|+++
T Consensus 282 Pv~K~~gd~v~~Gt~~~~G~~~~~v~~~G~~T~l~~I~~lv~~a~~~k~~~q~~~d~~a~~~v~~vl~ia~~~~~~w~~~ 361 (736)
T 3rfu_A 282 PVAKEASAKVIGATINQTGSFVMKALHVGSDTMLARIVQMVSDAQRSRAPIQRLADTVSGWFVPAVILVAVLSFIVWALL 361 (736)
T ss_dssp CEEECTTCEECTTCEEESCCCCEEECCCSTTSHHHHHHHHHHHHHSSCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CEEECCCCCCCCCEEECCCEEEEEEEEECHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 27831688677864861450999999841225999999999974326897999999999999999999999999999996
Q ss_pred CCC-CHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHCCCCCEEEECCCCCCCCCCEEEEEE
Q ss_conf 588-6567898875445210344312447999999999997739811122366430474399742765410293499996
Q 001837 331 GVS-NHKQWFHLALVVLVSACPCALILSTPVVTYCALTKAATSGLLIKGGDYLQTLAKVRFMAFDKTGTITRGEFVMSEF 409 (1007)
Q Consensus 331 ~~~-~~~~~~~~ai~vLi~a~P~aL~la~~ia~~~a~~~l~k~gilvk~~~~lE~Lg~Vd~I~fDKTGTLT~~~m~v~~i 409 (1007)
+.. .+..++.+++++|+++|||+|++++|+++..++.+++++|+++|++.++|+|+++|+||||||||||+|+|+|.++
T Consensus 362 ~~~~~~~~~l~~ai~vlviacPcaL~la~p~a~~~~~~~~a~~gilvk~~~alE~l~~v~~i~fDKTGTLT~g~~~v~~i 441 (736)
T 3rfu_A 362 GPQPALSYGLIAAVSVLIIACPCALGLATPMSIMVGVGKGAQSGVLIKNAEALERMEKVNTLVVDKTGTLTEGHPKLTRI 441 (736)
T ss_dssp CSSSSTTHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHHHHHTTEEESCHHHHHHHTSCCEEEECCBTTTBCSSCEEEEE
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEECHHHHHHHHCCCCEEEEECCCCCCCCCEEEEEE
T ss_conf 78732999999987748773242788889999999999975151332337899986279999981898875895279999
Q ss_pred ECCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCCEECCCCCEEEEECCEEEEEECHHHHHHHCC
Q ss_conf 23887789899999999421029994899999983617999998775551000598239999889999704888998099
Q 001837 410 QPLSEDINLNTLLYWVSSIESKSSHPMSAALVEYGRSLSIEPKPEDVEDYQNFPGEGIYGKIGGEEIYIGNRKIAQRAGC 489 (1007)
Q Consensus 410 ~~~~~~~~~~~lL~~aa~~e~~s~hPi~~AI~~~a~~~g~~~~~~~v~~~~~~~g~Gi~~~i~g~~i~ig~~~~~~~~~~ 489 (1007)
.. ...+.++++.++++++..+.||+++||++++...++.. ..+.+|+..+|.|+.+.++|+.+.+|+.+++...+.
T Consensus 442 ~~--~~~~~~~~l~~aa~le~~s~hPla~Aiv~~a~~~~~~~--~~~~~f~~~~g~gv~~~~~g~~~~~G~~~~~~~~~~ 517 (736)
T 3rfu_A 442 VT--DDFVEDNALALAAALEHQSEHPLANAIVHAAKEKGLSL--GSVEAFEAPTGKGVVGQVDGHHVAIGNARLMQEHGG 517 (736)
T ss_dssp EE--SSSCHHHHHHHHHHHHHSSCCHHHHHHHHHHHTTCCCC--CCCSCCCCCTTTEEEECSSSSCEEEESHHHHHHHCC
T ss_pred EE--CCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCC--CCCCCCCCCCCCEEEEEECCEEEEECCHHHHHHCCC
T ss_conf 83--48877899999999862289928999999999659986--675432024886589999998999738999987399
Q ss_pred CCCC---CCCCCCCCCCEEEEEEECCEEEEEEEECCCCCCCHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHCCCCCE
Q ss_conf 9988---8679677997299998799799999942743111999999999789919999189999999999991999651
Q 001837 490 GTVP---SVDGPKMKGNTIGYIFSGASPVGIFCLSDACRTGAAEAVNQLKSLGIRTAMLTGDNQSAAMQAQEQLGNALNV 566 (1007)
Q Consensus 490 ~~~~---~~~~~~~~g~~vi~va~d~~~lGli~l~D~lR~~a~~aI~~Lk~~GI~v~ilTGD~~~ta~~ia~~lGi~~~~ 566 (1007)
...+ ..+.+..+|.++++++.|++++|++.++|++|++++++|++|+++|++++|+|||+..++..+++++|++ .
T Consensus 518 ~~~~~~~~~~~~~~~G~~vl~va~d~~~~G~i~i~D~i~~~~~~aI~~L~~~Gi~v~mlTGd~~~~a~~ia~~lgi~--~ 595 (736)
T 3rfu_A 518 DNAPLFEKADELRGKGASVMFMAVDGKTVALLVVEDPIKSSTPETILELQQSGIEIVMLTGDSKRTAEAVAGTLGIK--K 595 (736)
T ss_dssp CCHHHHHHHHHHHHTTCEEEEEEETTEEEEEEEEECCBCSSHHHHHHHHHHHTCEEEEECSSCHHHHHHHHHHHTCC--C
T ss_pred CHHHHHHHHHHHHHCCCEEEEEEECCEEEEEEEEECCCHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHCCCC--E
T ss_conf 71678999999985698699998799899999850322030999999999879949998798989999999985998--7
Q ss_pred EEECCCHHHHHHHHHHHHHCC-EEEEECCCCCCHHHHHHCCEEEEECCCCCHHHHHHCCEEEECCCCCHHHHHHHHHHHH
Q ss_conf 983169867999999975389-0999919946999876199319928999687885049999169936199999999999
Q 001837 567 VHSELLPEDKAKIINQFKQEG-KTAMIGDGINDAPALATADIGISMGISGSALATETGQVILMSNDIRKVPEAIRLARKA 645 (1007)
Q Consensus 567 v~a~~~Pe~K~~iI~~lq~~g-~VamVGDG~ND~~aL~~AdVGIa~g~~g~~~a~~~ADivl~~~~l~~I~~~I~~gR~~ 645 (1007)
++++++|++|..+|+.+|+.| .|+|+|||.||+|||++|||||||| +|++.++++||++++++++.+++.++++||++
T Consensus 596 v~a~~~P~~K~~~v~~l~~~g~~V~~vGDG~ND~paL~~AdvGIAmg-~g~d~a~~~AD~vl~~~~~~~i~~ai~~sr~t 674 (736)
T 3rfu_A 596 VVAEIMPEDKSRIVSELKDKGLIVAMAGDGVNDAPALAKADIGIAMG-TGTDVAIESAGVTLLHGDLRGIAKARRLSEST 674 (736)
T ss_dssp EECSCCHHHHHHHHHHHHHHSCCEEEEECSSTTHHHHHHSSEEEEES-SSCSHHHHHCSEEECSCCSTTHHHHHHHHHHH
T ss_pred EEEECCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCEEEEEC-CCCHHHHHHCCEEECCCCHHHHHHHHHHHHHH
T ss_conf 99706999999999999966998999989857699998699779947-86599997699999269878999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH------HHH-HHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 99999999999999999999999------656-8999999998898999999534210224
Q 001837 646 HWKVIENIAVSIATKAGIIALAL------GGH-PLVWAAVLADVGTCLIVILNSMLLLHET 699 (1007)
Q Consensus 646 ~~~i~~ni~~al~~nii~i~la~------~g~-~~l~~a~l~~~~~~llvvlNS~rll~~~ 699 (1007)
+++++||++|++.||++++++++ +|+ ++||.+.+.+.++++++++||+||++.+
T Consensus 675 ~~~i~qnl~~a~~yN~~~iplAag~l~p~~G~~l~P~~aa~~m~~Ssv~Vv~nslrl~~~~ 735 (736)
T 3rfu_A 675 MSNIRQNLFFAFIYNVLGVPLAAGVLYPLTGLLLSPMIAAAAMALSSVSVIINALRLKRVT 735 (736)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTSSTTTSSCCCCHHHHHHHHHHHHHHHHHHHHTCCCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 9999999999999999999999987877504313299999999743999999989862667
No 3
>3j08_A COPA, copper-exporting P-type ATPase A; copper transporter, adenosine triphosph archaeal proteins, cation transport proteins; 10.00A {Archaeoglobus fulgidus}
Probab=1.00 E-value=1 Score=829.43 Aligned_cols=575 Identities=31% Similarity=0.488 Sum_probs=532.6
Q ss_pred HHHHHHHCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH------------HH-HHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 7776665048999999999972732188999999988874344------------79-9999999999999999999989
Q 001837 117 ALGAVAIGIFPIILKGLAAIRNFKLDINILVLIAVIGTIAMND------------YI-EAGIIVFLFTIAEWLESRASHK 183 (1007)
Q Consensus 117 ~l~~~~~~~~p~~~~a~~~lr~~~l~i~~Li~iai~~a~~~~~------------y~-~a~~Il~l~~i~~~le~~~~~k 183 (1007)
++++.+++++||++++|++++++.++||+|+++++..+++++. |+ .++++++++.+++++|.++++|
T Consensus 40 ~~~~~~~~g~~~~~~a~~~l~~~~~~md~L~~l~~~~a~~~s~~~~~~~~~~~~~~~~~~~~i~~~~~ig~~le~~~~~~ 119 (645)
T 3j08_A 40 ALPAIFYSGSSIFKAAFSALRRRTLNMDVMYSMGVGAAFLASVLSTAGVLPREYSFYETSVLLLAFLLLGRTLEARAKSR 119 (645)
T ss_dssp HHHHHHHHHHHHHHHTCCTTTTCSGGGCCCCSCHHHHHHHHHHHHHHHHCCSCSSCCCSHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999748999289999999999999999998633563259999999999999999999999999
Q ss_pred HHHHHHHHHCCCCCCEEEECCC--EEEECCCCCCCCEEEEECCCCCCCCEEEEECEEEEECCCCCCCCEEEEECCCCEEE
Q ss_conf 9999998640187616992199--89618885559399982897225418999320333235588987016824898243
Q 001837 184 ATAVMSSLMSIAPQKAIIAGTG--EEVDAGEVKLNTVLAVKAGEVIPIDGIVVDGKCEVDEKTLTGESYPVSKQKGSTVW 261 (1007)
Q Consensus 184 ~~~~l~~L~~~~p~~v~v~rdg--~~V~~~dLv~GDII~I~~Ge~IPaDgiIl~G~~~VDES~LTGES~pv~K~~g~~V~ 261 (1007)
+.+.+++++++.|.+++|+|+| ++|++++|+|||+|.|++||+|||||+|++|++.||||.|||||.|+.|++|+.||
T Consensus 120 ~~~~l~~l~~l~~~~a~v~r~g~~~~i~~~~l~~GDiv~v~~Ge~IPaDg~vl~G~~~VdeS~LTGES~Pv~K~~g~~v~ 199 (645)
T 3j08_A 120 TGEAIKKLVGLQAKTAVVIRDGKEIAVPVEEVAVGDIVIVRPGEKIPVDGVVVEGESYVDESMISGEPVPVLKSKGDEVF 199 (645)
T ss_dssp CCCCCHHHHHTSCSEEEEEETTEEEEEEGGGCCTTCEEEECTTCBCCSEEEEEECCEEEECHHHHCCSSCEEECTTCEEC
T ss_pred HHHHHHHHHCCCCCEEEEEECCEEEEEEHHHCCCCCEEEECCCCEEEEEEEEEECCEEEECCCCCCCCCCEECCCCCEEE
T ss_conf 99999998617999799999997999889997989999988999886689999886899802246998765608999741
Q ss_pred ECEEEEEEEEEEEEEEEECCEEEEHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
Q ss_conf 10088431099999997065077025877999620202899999899875769999999999998887158865678988
Q 001837 262 AGTINLNGYISVETTAVAEDCVVAKMAKLVEEAQNSKSRIQRFVDKFSQYYTPAVIFISACVAVIPIALGVSNHKQWFHL 341 (1007)
Q Consensus 262 aGT~v~~G~~~~~V~~tG~~T~~~ki~~lv~~a~~~ks~~q~~~~~ia~~~~~ivliiali~~ii~~~~~~~~~~~~~~~ 341 (1007)
+||.+.+|.++++|+++|.+|.++++.+++++++.+++++|+.+++++.+|++++++++++.+++|++....++..++.+
T Consensus 200 ~Gt~~~~g~~~~~v~~~G~~T~l~~i~~lv~~a~~~k~~~~~~~d~~~~~~~~~vl~~a~~~~~~~~~~~~~~~~~~~~~ 279 (645)
T 3j08_A 200 GATINNTGVLKIRATRVGGETLLAQIVKLVEDAMGSKPPIQRLADKVVAYFIPTVLLVAISAFIYWYFIAHAPLLFAFTT 279 (645)
T ss_dssp TTCEECSSCEEEEEEECGGGSHHHHHHHHHSCCCCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHCSSCCCSCSCCCTTTT
T ss_pred CCEEEECCCEEEEEEECCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
T ss_conf 66798257299999972774599999999997314698589999999999999999999999999999569869999999
Q ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHCCCCCEEEECCCCCCCCCCEEEEEEECCCCCCCHHHH
Q ss_conf 75445210344312447999999999997739811122366430474399742765410293499996238877898999
Q 001837 342 ALVVLVSACPCALILSTPVVTYCALTKAATSGLLIKGGDYLQTLAKVRFMAFDKTGTITRGEFVMSEFQPLSEDINLNTL 421 (1007)
Q Consensus 342 ai~vLi~a~P~aL~la~~ia~~~a~~~l~k~gilvk~~~~lE~Lg~Vd~I~fDKTGTLT~~~m~v~~i~~~~~~~~~~~l 421 (1007)
++++++++|||+|++++|+++..++.+++++|+++|++.++|+||++|++|||||||||+|+|++.++.+.+ .+.+++
T Consensus 280 ~i~vlvia~P~aL~la~p~a~~~~~~~~a~~gilvk~~~~lE~lg~v~~i~fDKTGTLT~~~~~v~~~~~~~--~~~~~~ 357 (645)
T 3j08_A 280 LIAVLVVACPCAFGLATPTALTVGMGKGAELGILIKNADALEVAEKVTAVIFDKTGTLTKGKPEVTDLVPLN--GDEREL 357 (645)
T ss_dssp THHHHHHHSCTTHHHHHHHHHHHHHHHHHTTCCCCSSTTHHHHGGGCCEEEEEGGGTSSSSCCEEEEEEESS--SCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEECCCHHHHHHHCCCEEEECCCCCCCCCCEEEEEEEECC--CCHHHH
T ss_conf 999999873668999999999999999997793766816999862799999868666558970799998179--997999
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCCEECCCCCEEEEECCEEEEEECHHHHHHHCCCCCCC----CCC
Q ss_conf 9999942102999489999998361799999877555100059823999988999970488899809999888----679
Q 001837 422 LYWVSSIESKSSHPMSAALVEYGRSLSIEPKPEDVEDYQNFPGEGIYGKIGGEEIYIGNRKIAQRAGCGTVPS----VDG 497 (1007)
Q Consensus 422 L~~aa~~e~~s~hPi~~AI~~~a~~~g~~~~~~~v~~~~~~~g~Gi~~~i~g~~i~ig~~~~~~~~~~~~~~~----~~~ 497 (1007)
+.+++.++..+.||+++|+++++...++.. ....+++..+|.|+.+ ..+.+|+++++...+...... .+.
T Consensus 358 l~~aa~~e~~s~hPla~Aiv~~a~~~g~~~--~~~~~~~~~~g~g~~~----~~v~~g~~~~~~~~~~~~~~~~~~~~~~ 431 (645)
T 3j08_A 358 LRLAAIAERRSEHPIAEAIVKKALEHGIEL--GEPEKVEVIAGEGVVA----DGILVGNKRLMEDFGVAVSNEVELALEK 431 (645)
T ss_dssp HHHHHHHHTTCCSHHHHHHHHHHHHTTCCC--CSCCCCEEETTTEEEE----TTEEEECHHHHHHTTCCCCHHHHHHHHH
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHCCCCC--CCCCCEEEECCCCEEE----EEEEECCHHHHHHCCCCCCHHHHHHHHH
T ss_conf 999999751588746799999999659986--7865359965884699----9999887999975498751889999999
Q ss_pred CCCCCCEEEEEEECCEEEEEEEECCCCCCCHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHCCCCCEEEECCCHHHHH
Q ss_conf 67799729999879979999994274311199999999978991999918999999999999199965198316986799
Q 001837 498 PKMKGNTIGYIFSGASPVGIFCLSDACRTGAAEAVNQLKSLGIRTAMLTGDNQSAAMQAQEQLGNALNVVHSELLPEDKA 577 (1007)
Q Consensus 498 ~~~~g~~vi~va~d~~~lGli~l~D~lR~~a~~aI~~Lk~~GI~v~ilTGD~~~ta~~ia~~lGi~~~~v~a~~~Pe~K~ 577 (1007)
+..+|.++++++.|++++|++.++|++||+++++|++|+++|++++|+|||+..++..+++++|++ .++++++|++|.
T Consensus 432 ~~~~g~~~l~va~~~~~~G~i~~~D~l~~~~~~~i~~L~~~Gi~v~~~TGd~~~~a~~ia~~lgi~--~~~~~~~P~~K~ 509 (645)
T 3j08_A 432 LEREAKTAVIVARNGRVEGIIAVSDTLKESAKPAVQELKRMGIKVGMITGDNWRSAEAISRELNLD--LVIAEVLPHQKS 509 (645)
T ss_dssp HHTTTCCCEEEEETTEEEEEEEEECCCTTTHHHHHHHHHHTTCEEEEECSSCHHHHHHHHHHHTCS--EEECSCCTTCHH
T ss_pred HHHCCCEEEEEEECCEEEEEEEECCCCHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHCCCC--EEEEECCHHHHH
T ss_conf 985598389998899999999934876567999999999779979999088879999999983997--899837877689
Q ss_pred HHHHHHHHCCEEEEECCCCCCHHHHHHCCEEEEECCCCCHHHHHHCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999753890999919946999876199319928999687885049999169936199999999999999999999999
Q 001837 578 KIINQFKQEGKTAMIGDGINDAPALATADIGISMGISGSALATETGQVILMSNDIRKVPEAIRLARKAHWKVIENIAVSI 657 (1007)
Q Consensus 578 ~iI~~lq~~g~VamVGDG~ND~~aL~~AdVGIa~g~~g~~~a~~~ADivl~~~~l~~I~~~I~~gR~~~~~i~~ni~~al 657 (1007)
.+++.+++...|+|+|||.||+||+++||+||+|| ++++.++++||++++++++..++.++++||++++++++|+.|++
T Consensus 510 ~~v~~l~~~~~v~~vGDg~ND~~al~~A~vgiamg-~g~~~a~~~AD~vl~~~~~~~i~~~i~~~r~~~~~i~~nl~~a~ 588 (645)
T 3j08_A 510 EEVKKLQAKEVVAFVGDGINDAPALAQADLGIAVG-SGSDVAVESGDIVLIRDDLRDVVAAIQLSRKTMSKIKQNIFWAL 588 (645)
T ss_dssp HHHHHHTTTCCEEEEECSSSCHHHHHHSSEEEEEC-CCSCCSSCCSSSEESSCCTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCEEEEEECCHHHHHHHHHCCEEEEEC-CCCHHHHHHCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999860995999969776899997599889948-87599998699999369988999999999999999999999999
Q ss_pred HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 9999999999965-------68999999998898999999534210224689
Q 001837 658 ATKAGIIALALGG-------HPLVWAAVLADVGTCLIVILNSMLLLHETHTH 702 (1007)
Q Consensus 658 ~~nii~i~la~~g-------~~~l~~a~l~~~~~~llvvlNS~rll~~~~~~ 702 (1007)
+||+++++++++| +.+||.|.+.+.++++++++||+|+++.+|+.
T Consensus 589 ~~N~~~i~la~~~~~~~~g~~l~p~~a~~~m~~ss~~vv~nslrl~~~~~~~ 640 (645)
T 3j08_A 589 IYNVILIPAAAGLLYPIFGVVFRPEFAGLAMAMSSVSVVANSLLLRNYVPPI 640 (645)
T ss_dssp HHHHHHHHHHTTTTTTTCCCSCCHHHHHHHHHTHHHHHHHHTTSCCCCSCST
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHHHHCCCCCCH
T ss_conf 9999999999986765103533899999987151689887568761678714
No 4
>3b8c_A ATPase 2, plasma membrane-type; P-type ATPase, proton pump, ATP-binding, hydrogen ION transport, hydrolase, ION transport; HET: ACP; 3.60A {Arabidopsis thaliana}
Probab=1.00 E-value=1 Score=740.95 Aligned_cols=558 Identities=21% Similarity=0.298 Sum_probs=449.1
Q ss_pred HHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCHHH
Q ss_conf 98420000111002466544567881379999999999999983202789877766650489999999999727321889
Q 001837 66 KALNQARFEANVRAYGGTSYQKKWPSPYAMACGVLLAISILKYVYHPLRWFALGAVAIGIFPIILKGLAAIRNFKLDINI 145 (1007)
Q Consensus 66 ~aL~~~gy~a~~~~~g~~~~~~~~~~~~~~~~gill~~~l~~~~~~~l~~l~l~~~~~~~~p~~~~a~~~lr~~~l~i~~ 145 (1007)
..|++.+...+...+|+|....+.++.|.. |+..|+.|+.|++.++.++++.- +...
T Consensus 31 ~GLs~~e~~~r~~~~G~N~l~~~~~~~~~~---------~l~~~~~p~~~il~~aaiis~~l-----------~~~~--- 87 (885)
T 3b8c_A 31 EGLTTQEGEDRIQIFGPNKLEEKKESKLLK---------FLGFMWNPLSWVMEMAAIMAIAL-----------ANGD--- 87 (885)
T ss_dssp SCSTHHHHHHHSSSCCSCCTTTTCCCTTSS---------TTSCCCGGGSSHHHHHHHGGGGS-----------SCCT---
T ss_pred CCCCHHHHHHHHHHCCCCCCCCCCCCHHHH---------HHHHHHHHHHHHHHHHHHHHHHH-----------HHCC---
T ss_conf 998999999999851997158878879999---------99999999999999999999999-----------7045---
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCC--EEEECCCCCCCCEEEEEC
Q ss_conf 999999888743447999999999999999999999899999998640187616992199--896188855593999828
Q 001837 146 LVLIAVIGTIAMNDYIEAGIIVFLFTIAEWLESRASHKATAVMSSLMSIAPQKAIIAGTG--EEVDAGEVKLNTVLAVKA 223 (1007)
Q Consensus 146 Li~iai~~a~~~~~y~~a~~Il~l~~i~~~le~~~~~k~~~~l~~L~~~~p~~v~v~rdg--~~V~~~dLv~GDII~I~~ 223 (1007)
-...+|+++++|++++.++.+++.++++|+.+.+++|+++.|.+++|+||| ++|++++|+|||+|.|++
T Consensus 88 ---------~~~~~~~~~~~I~~~v~i~~~l~~~qe~ka~~al~~L~~~~~~~a~V~RdG~~~~I~~~~Lv~GDiV~l~~ 158 (885)
T 3b8c_A 88 ---------GRPPDWQDFVGIICLLVINSTISFIEENNAGNAAAALMAGLAPKTKVLRDGKWSEQEAAILVPGDIVSIKL 158 (885)
T ss_dssp ---------TSCSCCTTHHHHHHHTTTTTTTTTTTTTTTTTHHHHTTTSCSCCCCCCCSSCSCCCCTTTTCTTSBCCCCS
T ss_pred ---------CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCEEEEEEHHHCCCCCEEEECC
T ss_conf ---------66301889999999999999999999999999999973349986999999989998989979897899889
Q ss_pred CCCCCCCEEEEECE-EEEECCCCCCCCEEEEECCCCEEEECEEEEEEEEEEEEEEEECCEEEEHHHHHHHHHHCCCHHHH
Q ss_conf 97225418999320-33323558898701682489824310088431099999997065077025877999620202899
Q 001837 224 GEVIPIDGIVVDGK-CEVDEKTLTGESYPVSKQKGSTVWAGTINLNGYISVETTAVAEDCVVAKMAKLVEEAQNSKSRIQ 302 (1007)
Q Consensus 224 Ge~IPaDgiIl~G~-~~VDES~LTGES~pv~K~~g~~V~aGT~v~~G~~~~~V~~tG~~T~~~ki~~lv~~a~~~ks~~q 302 (1007)
||+|||||+|++|+ +.||||.|||||.|+.|.+|+.+|+||.|.+|.++++|++||.+|.++++.+++.+ ...++++|
T Consensus 159 Gd~IPaDg~ll~g~~l~VdES~LTGES~Pv~K~~g~~v~~GT~v~~G~~~~~V~~tG~~T~~g~i~~lv~~-~~~~~~lq 237 (885)
T 3b8c_A 159 GDIIPADARLLEGDPLKVDQSALTGESLPVTKHPGQEVFSGSTCKQGEIEAVVIATGVHTFFGKAAHLVDS-TNQVGHFQ 237 (885)
T ss_dssp SCCCSSCCCCCCSSCBCCCCCSTTCCSSCCCBSSCCCCCSCCCCCSCCCCCBCCSCTTTTTSTTCCCSCCS-CSCCSTTT
T ss_pred CCEEEECEEEEECCCCCCCCCCCCCCCCCEEECCCCCCCCCEEEEEEEEEEEEEECCCCCHHHHHHHHHHC-CCCCCHHH
T ss_conf 99993035999767540034446888864583489830267599511799999975730199999999864-64468499
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHH
Q ss_conf 9998998757699999-999999988871588656789887544521034431244799999999999773981112236
Q 001837 303 RFVDKFSQYYTPAVIF-ISACVAVIPIALGVSNHKQWFHLALVVLVSACPCALILSTPVVTYCALTKAATSGLLIKGGDY 381 (1007)
Q Consensus 303 ~~~~~ia~~~~~ivli-iali~~ii~~~~~~~~~~~~~~~ai~vLi~a~P~aL~la~~ia~~~a~~~l~k~gilvk~~~~ 381 (1007)
+.+++++.++.+.+++ +++++++++++ ...++..++.+++++++++|||+||+++++++..+..+|+++|+++|++.+
T Consensus 238 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~v~llv~aiP~aLp~~vti~la~g~~r~ak~~ilvk~~~a 316 (885)
T 3b8c_A 238 KVLTAIGNFCICSIAIGMVIEIIVMYPI-QRRKYRDGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHRLSQQGAITKRMTA 316 (885)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHSTTTTTT-TCSCSTTHHHHHHHHTTTTCCSSTTTHHHHTTTHHHHHHTTTSCCCSSGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEECCCHH
T ss_conf 9999999999999999999999999998-068699999999999999703689999999999999999719869689518
Q ss_pred HHHCCCCCEEEECCCCCCCCCCEEEEEEE--CCCCCCCHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHCCC-CCCCCCCC
Q ss_conf 64304743997427654102934999962--388778989999999942102-999489999998361799-99987755
Q 001837 382 LQTLAKVRFMAFDKTGTITRGEFVMSEFQ--PLSEDINLNTLLYWVSSIESK-SSHPMSAALVEYGRSLSI-EPKPEDVE 457 (1007)
Q Consensus 382 lE~Lg~Vd~I~fDKTGTLT~~~m~v~~i~--~~~~~~~~~~lL~~aa~~e~~-s~hPi~~AI~~~a~~~g~-~~~~~~v~ 457 (1007)
+|+||++++||||||||||+|+|+|.+.. .....++.++++.+++.++.. ++||++.|++.++.+... ........
T Consensus 317 iE~Lg~v~~Ic~DKTGTLT~n~m~v~~~~~~~~~~~~~~~~ll~~aa~~~~~~~~~p~~~Al~~~~~~~~~~~~~~~~~~ 396 (885)
T 3b8c_A 317 IEEMAGMDVLCSDKTGTLTLNKLSVDKNLVEVFCKGVEKDQVLLFAAMASRVENQDAIDAAMVGMLADPKEARAGIREVH 396 (885)
T ss_dssp HHHHTTCCCCEEECCCCCSCCCCCCCSCCCCSSCSSTTHHHHHHHHHHHCCSSSCCSHHHHHHHTTCCTTCCCCSSCCBC
T ss_pred HHHHHCCCEEEECCCCCCCCCCEEEEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCHHHHHHCCCEEE
T ss_conf 88976799899879987616852799877751589999999999999972788999158999998646365762483220
Q ss_pred --------CCEECCCCCEEEEECCE--EEEEECHHHHHHHCC-C-CCC-----CCCCCCCCCCEEEEEEEC---------
Q ss_conf --------51000598239999889--999704888998099-9-988-----867967799729999879---------
Q 001837 458 --------DYQNFPGEGIYGKIGGE--EIYIGNRKIAQRAGC-G-TVP-----SVDGPKMKGNTIGYIFSG--------- 511 (1007)
Q Consensus 458 --------~~~~~~g~Gi~~~i~g~--~i~ig~~~~~~~~~~-~-~~~-----~~~~~~~~g~~vi~va~d--------- 511 (1007)
.+......+ .+|. .+..|+++.+..... . ..+ ..+.+..+|.++++++.+
T Consensus 397 ~~pF~s~~k~~sv~~~~----~~g~~~~~~KGa~e~il~~c~~~~~~~~~~~~~~~~~a~~G~rvl~vA~~~~~~~~~~~ 472 (885)
T 3b8c_A 397 FLPFNPVDKRTALTYID----GSGNWHRVSKGAPEQILELAKASNDLSKKVLSIIDKYAERGLRSLAVARQVVPEKTKES 472 (885)
T ss_dssp CCCCCTTTCCCCCBBCS----SSSCBCBCCCCSGGGTSSSSCCCSTTTTTHHHHHHHHTTTTCEEEEECCBCCCSSSSSC
T ss_pred CCCCCCCCCEEEEEEEE----CCCCEEEEEECCHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCC
T ss_conf 13578522568999980----48968999948899999764586445799999999998579869999994466433111
Q ss_pred ----CEEEEEEEECCCCCCCHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHCCCCC----------------------
Q ss_conf ----979999994274311199999999978991999918999999999999199965----------------------
Q 001837 512 ----ASPVGIFCLSDACRTGAAEAVNQLKSLGIRTAMLTGDNQSAAMQAQEQLGNALN---------------------- 565 (1007)
Q Consensus 512 ----~~~lGli~l~D~lR~~a~~aI~~Lk~~GI~v~ilTGD~~~ta~~ia~~lGi~~~---------------------- 565 (1007)
++++|++++.||+||+++++|++|+++||+++|+|||+..+|..+|+++||...
T Consensus 473 ~e~~l~~lGli~i~Dp~R~~a~~aI~~l~~aGI~v~MiTGD~~~tA~~iA~~lGi~~~~~~~~~l~g~~~~~~~~~~~l~ 552 (885)
T 3b8c_A 473 PGAPWEFVGLLPLFDPPRHDSAETIRRALNLGVNVKMITGDQLAIGKETGRRLGMGTNMYPSSALLGTHKDANLASIPVE 552 (885)
T ss_dssp CCCCCCCCEEEEECCCCCHHHHHHHHHHHHTTCCCEEEESSCHHHHTHHHHTTTCTTCCSTTSSCCBGGGGTTSCCSCHH
T ss_pred CCCCCEEEEEEEEECCCCHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHCCCCCCCCCCEEECCCCCCCCCHHHHH
T ss_conf 35675799999960666120899999999769968999399869999999980976466775144555312224635799
Q ss_pred ------EEEECCCHHHHHHHHHHHHHCC-EEEEECCCCCCHHHHHHCCEEEEECCCCCHHHHHHCCEEEECCCCCHHHHH
Q ss_conf ------1983169867999999975389-099991994699987619931992899968788504999916993619999
Q 001837 566 ------VVHSELLPEDKAKIINQFKQEG-KTAMIGDGINDAPALATADIGISMGISGSALATETGQVILMSNDIRKVPEA 638 (1007)
Q Consensus 566 ------~v~a~~~Pe~K~~iI~~lq~~g-~VamVGDG~ND~~aL~~AdVGIa~g~~g~~~a~~~ADivl~~~~l~~I~~~ 638 (1007)
.+|+|++|+||..+|+.+|+.| .|+|+|||.||+|||++||+||||+ +|++.++++||++++++++..|+.+
T Consensus 553 ~~~~~~~v~arv~P~~K~~iV~~lq~~g~~Vam~GDGvNDapaLk~AdvGIAmg-~gtd~ak~aADivl~~~~~~~I~~a 631 (885)
T 3b8c_A 553 ELIEKADGFAGVFPEHKYEIVKKLQERKHIVGMTGDGVNDAPALKKADIGIAVA-DATDAARGASDIVLTEPGLSVIISA 631 (885)
T ss_dssp HHHHTSCCEECCCHHHHHHHHHHHHHTTCCCCBCCCSSTTHHHHHHSSSCCCCS-SSHHHHGGGCSSCCSSCSHHHHTHH
T ss_pred HHHHHCCEEEEECHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHCCEEEEEC-CCCHHHHHHCCEEECCCCHHHHHHH
T ss_conf 998638689887899999999999977996999759812299998699759957-7129999843401335766689999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999999999999999
Q 001837 639 IRLARKAHWKVIENIAVSIATKAG 662 (1007)
Q Consensus 639 I~~gR~~~~~i~~ni~~al~~nii 662 (1007)
+.+||++++++++|+.|++++|+.
T Consensus 632 i~~gR~~~~ni~~~i~~~l~~n~~ 655 (885)
T 3b8c_A 632 VLTSRAIFQRMKNYTIYAVSITIR 655 (885)
T ss_dssp HHTHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999999999999999999
No 5
>1mhs_A Proton pump, plasma membrane ATPase; ION transport, membrane protein, P-type ATPase, active transport, cryo-electron microscopy; 8.00A {Neurospora crassa} SCOP: i.18.1.1
Probab=1.00 E-value=1 Score=739.58 Aligned_cols=578 Identities=22% Similarity=0.324 Sum_probs=467.9
Q ss_pred HHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCHHHH
Q ss_conf 84200001110024665445678813799999999999999832027898777666504899999999997273218899
Q 001837 67 ALNQARFEANVRAYGGTSYQKKWPSPYAMACGVLLAISILKYVYHPLRWFALGAVAIGIFPIILKGLAAIRNFKLDINIL 146 (1007)
Q Consensus 67 aL~~~gy~a~~~~~g~~~~~~~~~~~~~~~~gill~~~l~~~~~~~l~~l~l~~~~~~~~p~~~~a~~~lr~~~l~i~~L 146 (1007)
.|...+...+...+|+|....+++..|. .|+.+|..|+.+++.+
T Consensus 87 GLs~~ea~~r~~~~G~N~l~~~~~~~~~---------~~l~~f~~~~~~ll~~--------------------------- 130 (920)
T 1mhs_A 87 GLTSEEVVQRRRKYGLNQMKEEKENHFL---------KFLGFFVGPIQFVMEG--------------------------- 130 (920)
T ss_dssp CCCSHHHHHHHHHTSSSSCCCCCCSSHH---------HHTHHHHHHHHHHHHH---------------------------
T ss_pred CCCHHHHHHHHHHCCCCCCCCCCCCHHH---------HHHHHHHHHHHHHHHH---------------------------
T ss_conf 9999999999996399815888888999---------9999998799999999---------------------------
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCC--EEEECCCCCCCCEEEEECC
Q ss_conf 99999888743447999999999999999999999899999998640187616992199--8961888555939998289
Q 001837 147 VLIAVIGTIAMNDYIEAGIIVFLFTIAEWLESRASHKATAVMSSLMSIAPQKAIIAGTG--EEVDAGEVKLNTVLAVKAG 224 (1007)
Q Consensus 147 i~iai~~a~~~~~y~~a~~Il~l~~i~~~le~~~~~k~~~~l~~L~~~~p~~v~v~rdg--~~V~~~dLv~GDII~I~~G 224 (1007)
+.++++++++|.++++|++++.++.+++.++++++.+.+++|.++.|.+++|+|+| ++|++++|+|||+|.|++|
T Consensus 131 ---aai~s~~~g~~~~~~~i~~vv~i~~~i~~~qe~~a~~a~~~L~~l~~~~a~V~RdG~~~~I~~~eLv~GDiV~l~~G 207 (920)
T 1mhs_A 131 ---AAVLAAGLEDWVDFGVICGLLLLNAVVGFVQEFQAGSIVDELKKTLALKAVVLRDGTLKEIEAPEVVPGDILQVEEG 207 (920)
T ss_dssp ---HHHHCTTCSCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCCCSSCEEECSSSEEECCTTTSCTTSEEEECTT
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCEEEEEEHHHCCCCCEEEECCC
T ss_conf ---99999999768999999999999999999999999999998633599879999899899989899588978996779
Q ss_pred CCCCCCEEEEECE--EEEECCCCCCCCEEEEECCCCEEEECEEEEEEEEEEEEEEEECCEEEEHHHHHHHHHHCCCHHHH
Q ss_conf 7225418999320--33323558898701682489824310088431099999997065077025877999620202899
Q 001837 225 EVIPIDGIVVDGK--CEVDEKTLTGESYPVSKQKGSTVWAGTINLNGYISVETTAVAEDCVVAKMAKLVEEAQNSKSRIQ 302 (1007)
Q Consensus 225 e~IPaDgiIl~G~--~~VDES~LTGES~pv~K~~g~~V~aGT~v~~G~~~~~V~~tG~~T~~~ki~~lv~~a~~~ks~~q 302 (1007)
|+|||||+|++|+ +.||||+|||||.|+.|.+|+.+|+||.|.+|.++++|++||.+|.++++.+++.+++..+++++
T Consensus 208 d~VPaDg~ll~g~~~l~VDES~LTGES~PV~K~~gd~v~sGT~v~~G~~~~~V~~tG~~T~~g~I~~lv~~a~~~~~~l~ 287 (920)
T 1mhs_A 208 TIIPADGRIVTDDAFLQVDQSALTGESLAVDKHKGDQVFASSAVKRGEAFVVITATGDNTFVGRAAALVNAASGGSGHFT 287 (920)
T ss_dssp CBCSSEEEEEEESSCCEEBCTTTSSCCCCEECCSSCEECSCBCCSCCCEEEEEEECSTTCSTTTTTSSCCCCCCCCCHHH
T ss_pred CCCCCCEEEEECCCEEEEECCCCCCCCCCEEECCCCEEECCCEEECCEEEEEEEEECCCCHHHHHHHHHHHCCCCCCHHH
T ss_conf 73366569994572232022224788864693479863037669513599999995776788899887764246776499
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHH
Q ss_conf 99989987576999999999999888715886567898875445210344312447999999999997739811122366
Q 001837 303 RFVDKFSQYYTPAVIFISACVAVIPIALGVSNHKQWFHLALVVLVSACPCALILSTPVVTYCALTKAATSGLLIKGGDYL 382 (1007)
Q Consensus 303 ~~~~~ia~~~~~ivliiali~~ii~~~~~~~~~~~~~~~ai~vLi~a~P~aL~la~~ia~~~a~~~l~k~gilvk~~~~l 382 (1007)
+.+++++.+++++++++++++++++++. ..++..++.+++++++++|||+|++++|+++..+..+|+++|+++|++.++
T Consensus 288 ~~~~~i~~~l~~~~~~~~~i~~~~~~~~-~~~~~~~l~~av~llV~aiP~aLp~~vti~la~g~~~mak~~ilvk~~~ai 366 (920)
T 1mhs_A 288 EVLNGIGTILLILVIFTLLIVWVSSFYR-SNPIVQILEFTLAITIIGVPVGLPAVVTTTMAVGAAYLAKKKAIVQKLSAI 366 (920)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTTTT-TCCHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTTCCCCCTTTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCEEEECCCHH
T ss_conf 9999999999999999999999998846-886999999999999876760377778999999999998688387057135
Q ss_pred HHCCCCCEEEECCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHH-HHHCCC--CHHHHHHHHHHHHCCCCCC---CCCC
Q ss_conf 430474399742765410293499996238877898999999994-210299--9489999998361799999---8775
Q 001837 383 QTLAKVRFMAFDKTGTITRGEFVMSEFQPLSEDINLNTLLYWVSS-IESKSS--HPMSAALVEYGRSLSIEPK---PEDV 456 (1007)
Q Consensus 383 E~Lg~Vd~I~fDKTGTLT~~~m~v~~i~~~~~~~~~~~lL~~aa~-~e~~s~--hPi~~AI~~~a~~~g~~~~---~~~v 456 (1007)
|+||++++||||||||||+|+|.|.+++...+ ++.++++..++. .+..+. ||++.|++.++...+.... ....
T Consensus 367 E~Lg~v~vIc~DKTGTLT~n~m~v~~~~~~~g-~~~~~ll~~a~l~~~~~~~~~~P~e~Al~~~~~~~~~~~~~~~~~~~ 445 (920)
T 1mhs_A 367 ESLAGVEILCSDKTGTLTKNKLSLHDPYTVAG-VDPEDLMLTACLAASRKKKGIDAIDKAFLKSLKYYPRAKSVLSKYKV 445 (920)
T ss_dssp HHHHTCCEEEEETBTTTBSSCSCCCCCBCCSC-CCCTHHHHHHHHSCCCSSCSCCSHHHHHHHHHHHSSSCCGGGSCCCE
T ss_pred HHHCCCCEEEECCCCCCCCCCEEEEEEEECCC-CCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCHHHCCCCCE
T ss_conf 55436768997788875555316999850699-89899999999854776668985899999999964631010135533
Q ss_pred CCCEE--CCCCCEEEEE---CCEE--EEEECHHHHHHHCCCC--CC---------CCCCCCCCCCEEEEEEEC-----CE
Q ss_conf 55100--0598239999---8899--9970488899809999--88---------867967799729999879-----97
Q 001837 457 EDYQN--FPGEGIYGKI---GGEE--IYIGNRKIAQRAGCGT--VP---------SVDGPKMKGNTIGYIFSG-----AS 513 (1007)
Q Consensus 457 ~~~~~--~~g~Gi~~~i---~g~~--i~ig~~~~~~~~~~~~--~~---------~~~~~~~~g~~vi~va~d-----~~ 513 (1007)
.++.. ..++++...+ +|+. +..|+++++....-.. .+ ..+.+..+|.++++++.+ ++
T Consensus 446 ~~~~pF~s~~k~ms~iv~~~~g~~~~~~KGape~il~~c~~~~~~~~~~~~~~~~~~~~~a~~G~RvL~vA~~~~e~~l~ 525 (920)
T 1mhs_A 446 LQFHPFDPVSKKVVAVVESPQGERITCVKGAPLFVLKTVEEDHPIPEEVDQAYKNKVAEFATRGFRSLGVARKRGEGSWE 525 (920)
T ss_dssp EEEEEEETTTTEEEEEECCSSSSCEEEEEECHHHHHHHCCCSSCCCHHHHHHHHHHHHHHHTSSCCCCEECCCSSSCSCC
T ss_pred EEEEECCCCCCEEEEEEEECCCCEEEEEECCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCE
T ss_conf 57861167788599999967991899990879999986135678987889989999999986799799999832665307
Q ss_pred EEEEEEECCCCCCCHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHCCCCC---------------------------E
Q ss_conf 9999994274311199999999978991999918999999999999199965---------------------------1
Q 001837 514 PVGIFCLSDACRTGAAEAVNQLKSLGIRTAMLTGDNQSAAMQAQEQLGNALN---------------------------V 566 (1007)
Q Consensus 514 ~lGli~l~D~lR~~a~~aI~~Lk~~GI~v~ilTGD~~~ta~~ia~~lGi~~~---------------------------~ 566 (1007)
++|++++.|++||+++++|++|+++||+++|+|||+..+|.++|+++||... .
T Consensus 526 ~lGli~i~Dp~R~ea~~aI~~l~~aGI~v~MiTGD~~~TA~aIA~~lGI~~~~~~~~~~~~~g~~~~~~~el~~~~~~~~ 605 (920)
T 1mhs_A 526 ILGIMPCMDPPRHDTYKTVCEAKTLGLSIKMLTGDAVGIARETSRQLGLGTNIYNAERLGLGGGGDMPGSEVYDFVEAAD 605 (920)
T ss_dssp CCBBCCCCCCCCHHHHHHHHHHHHHTCEEEEEESSCHHHHHHHHHHHTSSCSCCCSSSSSSCBCCCGGGGGGGTTTTTTS
T ss_pred EEEEEEEECCCCCCHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHCCCCCCCCCCCCEEECCCCCCCHHHHHHHHHHCE
T ss_conf 88999973432101799999986257449998389789999999984999654675412422765589899998775181
Q ss_pred EEECCCHHHHHHHHHHHHHCC-EEEEECCCCCCHHHHHHCCEEEEECCCCCHHHHHHCCEEEECCCCCHHHHHHHHHHHH
Q ss_conf 983169867999999975389-0999919946999876199319928999687885049999169936199999999999
Q 001837 567 VHSELLPEDKAKIINQFKQEG-KTAMIGDGINDAPALATADIGISMGISGSALATETGQVILMSNDIRKVPEAIRLARKA 645 (1007)
Q Consensus 567 v~a~~~Pe~K~~iI~~lq~~g-~VamVGDG~ND~~aL~~AdVGIa~g~~g~~~a~~~ADivl~~~~l~~I~~~I~~gR~~ 645 (1007)
+|+|++|++|..+|+.+|+.| .|+|+|||.||+|||++|||||||+ +|++.++++||++++++++..|+.++.+||++
T Consensus 606 V~arv~P~~K~~iV~~Lq~~g~~Vam~GDGvNDapaLk~AdvGIAmg-~gtd~ak~aADiVl~~~~~~~I~~ai~~gR~~ 684 (920)
T 1mhs_A 606 GFAEVFPQHKYNVVEILQQRGYLVAMTGDGVNDAPSLKKADTGIAVE-GSSDAARSAADIVFLAPGLGAIIDALKTSRQI 684 (920)
T ss_dssp CEESCCSTHHHHHHHHHHTTTCCCEECCCCGGGHHHHHHSSEEEEET-TSCHHHHHSSSEEESSCCSHHHHHHHHHHHHH
T ss_pred EEEEECHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHCCCCCCCC-CCCHHHHHHCCEEECCCCHHHHHHHHHHHHHH
T ss_conf 99983799999999999967996999828810099998578674056-43399998468077679777899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-----HHH-----HHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999-----656-----8999999998898999
Q 001837 646 HWKVIENIAVSIATKAGIIALAL-----GGH-----PLVWAAVLADVGTCLI 687 (1007)
Q Consensus 646 ~~~i~~ni~~al~~nii~i~la~-----~g~-----~~l~~a~l~~~~~~ll 687 (1007)
++++++++.|.++.|+....+.. +++ +.+|.+++.+. +++.
T Consensus 685 ~~ni~k~i~~~l~~n~~~~~~~~~~~~~~~~~l~~~~il~~~l~~d~-~~la 735 (920)
T 1mhs_A 685 FHRMYAYVVYRIALSIHLEIFLGLWIAILNRSLNIELVVFIAIFADV-ATLA 735 (920)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSCSCCCCHHHHHHHHHHHTT-HHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-HHHH
T ss_conf 99999987889799999999999999999616879999999999877-7665
No 6
>2zxe_A Na, K-ATPase alpha subunit; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_A* 3b8e_A* 3kdp_A* 3n2f_A* 3n23_A* 1mo7_A 1mo8_A* 1q3i_A
Probab=1.00 E-value=1 Score=710.51 Aligned_cols=609 Identities=18% Similarity=0.259 Sum_probs=472.7
Q ss_pred CCCCHHHHHHHHHH--------CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHH
Q ss_conf 85368999998420--------0001110024665445678813799999999999999832027898777666504899
Q 001837 57 LLISQHQIVKALNQ--------ARFEANVRAYGGTSYQKKWPSPYAMACGVLLAISILKYVYHPLRWFALGAVAIGIFPI 128 (1007)
Q Consensus 57 ~~~s~~~I~~aL~~--------~gy~a~~~~~g~~~~~~~~~~~~~~~~gill~~~l~~~~~~~l~~l~l~~~~~~~~p~ 128 (1007)
...+.+++.+.+.. .+...++..+|+|....+.+.+++. .++..|+.|+.++++++.++++...
T Consensus 49 ~~~~~~~~~~~l~t~~~~GLs~~e~~~r~~~~G~N~l~~~~~~~~~~--------~~~~~~~~~~~~iL~~aa~ls~~~~ 120 (1028)
T 2zxe_A 49 HKLSLDELHNKYGTDLTRGLTNARAKEILARDGPNSLTPPPTTPEWI--------KFCRQLFGGFSILLWIGAILCFLAY 120 (1028)
T ss_dssp SSSCHHHHHHHHTCCSSSCBCHHHHHHHHHHHCCSCCCCCCCCCHHH--------HHHTTTTSTHHHHHHHHHHHHHHHH
T ss_pred HHCCHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHH--------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 54999999999686946798999999999866999799999998999--------9999997089999999999999998
Q ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCC--E
Q ss_conf 99999999727321889999999888743447999999999999999999999899999998640187616992199--8
Q 001837 129 ILKGLAAIRNFKLDINILVLIAVIGTIAMNDYIEAGIIVFLFTIAEWLESRASHKATAVMSSLMSIAPQKAIIAGTG--E 206 (1007)
Q Consensus 129 ~~~a~~~lr~~~l~i~~Li~iai~~a~~~~~y~~a~~Il~l~~i~~~le~~~~~k~~~~l~~L~~~~p~~v~v~rdg--~ 206 (1007)
.... ..... .....|++++++++++.++..++.++++|+.+.+++|.++.|.+++|+|+| +
T Consensus 121 ~~~~---~~~~~--------------~~~~~~~~~~~i~~vv~i~~~~~~~qe~ka~~~~~~L~~l~~~~a~V~Rdg~~~ 183 (1028)
T 2zxe_A 121 GIQA---ATEDE--------------PANDNLYLGVVLSTVVIVTGCFSYYQEAKSSRIMDSFKNMVPQQALVIRDGEKS 183 (1028)
T ss_dssp HHHH---HSSCC--------------CCCHHHHHHHHHHHHHHHHHHHHHHHTCCCCCHHHHHHTTSCSEEEEEETTEEE
T ss_pred HHHC---CCCCC--------------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCEEE
T ss_conf 7511---34566--------------652007999898988889999999999999999999885278726999899999
Q ss_pred EEECCCCCCCCEEEEECCCCCCCCEEEEECE-EEEECCCCCCCCEEEEECCCC----------EEEECEEEEEEEEEEEE
Q ss_conf 9618885559399982897225418999320-333235588987016824898----------24310088431099999
Q 001837 207 EVDAGEVKLNTVLAVKAGEVIPIDGIVVDGK-CEVDEKTLTGESYPVSKQKGS----------TVWAGTINLNGYISVET 275 (1007)
Q Consensus 207 ~V~~~dLv~GDII~I~~Ge~IPaDgiIl~G~-~~VDES~LTGES~pv~K~~g~----------~V~aGT~v~~G~~~~~V 275 (1007)
+|++++|+|||||.|++||+||||++|++|+ +.||||+|||||.|+.|.+++ ++|+||.|.+|.++++|
T Consensus 184 ~I~~~~Lv~GDiV~l~~Gd~IPaD~~ll~g~~~~VdeS~LTGES~pv~K~~~~~~~~~~~~~n~v~~GT~v~~G~~~~~V 263 (1028)
T 2zxe_A 184 TINAEFVVAGDLVEVKGGDRIPADLRIISAHGCKVDNSSLTGESEPQTRSPEFSSENPLETRNIAFFSTNCVEGTARGVV 263 (1028)
T ss_dssp EEEGGGCCTTCEEEEETTCBCCSEEEEEEEEEEEEECHHHHSCCSCEECCSSCCCSSTTTCSSEECTTCEEEEEEEEEEE
T ss_pred EEEHHHCCCCCEEEECCCCEEECEEEEEEECCEEEECCCCCCCCCCEECCCCCCCCCCCCCCCEEEECCEEECCEEEEEE
T ss_conf 99888978677799899798412289996085899867567887634434677888844533548737469701699999
Q ss_pred EEEECCEEEEHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCH
Q ss_conf 99706507702587799962020289999989987576999999999999888715886567898875445210344312
Q 001837 276 TAVAEDCVVAKMAKLVEEAQNSKSRIQRFVDKFSQYYTPAVIFISACVAVIPIALGVSNHKQWFHLALVVLVSACPCALI 355 (1007)
Q Consensus 276 ~~tG~~T~~~ki~~lv~~a~~~ks~~q~~~~~ia~~~~~ivliiali~~ii~~~~~~~~~~~~~~~ai~vLi~a~P~aL~ 355 (1007)
++||.+|.+|++.+++.+++.+++++|+.+++++.+++++++++++++++++++.+ .++...+.+++++++++|||+|+
T Consensus 264 ~~tG~~T~~g~i~~~~~~~~~~~t~lq~~~~~~~~~l~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~i~llv~~iP~~Lp 342 (1028)
T 2zxe_A 264 VYTGDRTVMGRIATLASGLEVGRTPIAIEIEHFIHIITGVAVFLGVSFFILSLILG-YSWLEAVIFLIGIIVANVPEGLL 342 (1028)
T ss_dssp EECGGGSHHHHHHHHHHHSCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-CCHHHHHHHHHHHHHHHSCTTHH
T ss_pred EEECCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHCCCHHH
T ss_conf 98451439889998603788788928999999999999999999999999999736-76999999999999997474179
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCHHHHHHCCCCCEEEECCCCCCCCCCEEEEEEECCCCC----------------CCH-
Q ss_conf 447999999999997739811122366430474399742765410293499996238877----------------898-
Q 001837 356 LSTPVVTYCALTKAATSGLLIKGGDYLQTLAKVRFMAFDKTGTITRGEFVMSEFQPLSED----------------INL- 418 (1007)
Q Consensus 356 la~~ia~~~a~~~l~k~gilvk~~~~lE~Lg~Vd~I~fDKTGTLT~~~m~v~~i~~~~~~----------------~~~- 418 (1007)
+++++++..+..+|+++|+++|++.++|+||++++||||||||||+|+|+|.+++..+.. .+.
T Consensus 343 ~~vti~l~~~~~~mak~~ilvk~~~avE~Lg~v~~Ic~DKTGTLT~n~m~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 422 (1028)
T 2zxe_A 343 ATVTVCLTLTAKRMARKNCLVKNLEAVETLGSTSTICSDKTGTLTQNRMTVAHMWFDNQIHEADTTENQSGAAFDKTSAT 422 (1028)
T ss_dssp HHHHHHHHHHHHHHHTTTEEESSTTHHHHHHHCCEEEECCCCCCBCSSCEEEEEEETTEEEECCCCTTCCSCCCCSSCHH
T ss_pred HHHHHHHHHHHHHHHHCCCEECCCHHHHHHCCCEEEECCCCCCCCCCEEEEEEEEECCEEEECCCCCCCCCCCCCCCCHH
T ss_conf 99999999999998558916444567664147629951688888877389999998984651367777655444667789
Q ss_pred -HHHHHHHHHHH------H----------CCCCHHHHHHHHHHHHCCCCCC--CCCCCCCEECCC---CCEEE---EE--
Q ss_conf -99999999421------0----------2999489999998361799999--877555100059---82399---99--
Q 001837 419 -NTLLYWVSSIE------S----------KSSHPMSAALVEYGRSLSIEPK--PEDVEDYQNFPG---EGIYG---KI-- 471 (1007)
Q Consensus 419 -~~lL~~aa~~e------~----------~s~hPi~~AI~~~a~~~g~~~~--~~~v~~~~~~~g---~Gi~~---~i-- 471 (1007)
..++..++.+. . ..++|.+.|++.++...+.+.. .........+|. ..... ..
T Consensus 423 ~~~l~~~~alc~~~~~~~~~~~hp~~~~~~~gdp~E~Al~~~a~~~~~~~~~~~~~~~~~~~~pF~s~rk~msvi~~~~~ 502 (1028)
T 2zxe_A 423 WSALSRIAALCNRAVFQAGQDNVPILKRSVAGDASESALLKCIELCCGSVQGMRDRNPKIVEIPFNSTNKYQLSIHENEK 502 (1028)
T ss_dssp HHHHHHHHHHSCCCEECTTCTTSCGGGSCEESCHHHHHHHHHHHHHHSCHHHHHHHSCEEEEECCCTTTCEEEEEEECSC
T ss_pred HHHHHHHHHHCCCCEEECCCCCCCCCCCEECCCCHHHHHHHHHHHHCCCHHHHHHHCCEEEEECCCCCCCEEEEEEECCC
T ss_conf 99999999865787650477777664530078940999999999958988898874826787044766664799994057
Q ss_pred --CC--EEEEEECHHHHHHHCCC------CCC-----------CCCCCCCCCCEEEEEE---------------------
Q ss_conf --88--99997048889980999------988-----------8679677997299998---------------------
Q 001837 472 --GG--EEIYIGNRKIAQRAGCG------TVP-----------SVDGPKMKGNTIGYIF--------------------- 509 (1007)
Q Consensus 472 --~g--~~i~ig~~~~~~~~~~~------~~~-----------~~~~~~~~g~~vi~va--------------------- 509 (1007)
++ ..+..|.++.+...... ..+ ..+.+..+|.+++.++
T Consensus 503 ~~~~~~~~~~KGA~e~il~~c~~~~~~g~~~~l~~~~~~~~~~~~~~~a~~G~RvL~~A~~~l~~~~~~~~~~~~~~~~~ 582 (1028)
T 2zxe_A 503 SSESRYLLVMKGAPERILDRCSTILLNGAEEPLKEDMKEAFQNAYLELGGLGERVLGFCHFALPEDKYNEGYPFDADEPN 582 (1028)
T ss_dssp TTTCCEEEEEEECHHHHHTTEEEECBTTBCCBCCHHHHHHHHHHHHHHHHTTCEEEEEEEEECCSTTSCTTCCCCTTTTC
T ss_pred CCCCCEEEEEECCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEEEECCCCCCCCCCCCCHHHHH
T ss_conf 88871799993882899987456533897212888999999999999985599799999874682213420124624555
Q ss_pred ---ECCEEEEEEEECCCCCCCHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHCCCCC---------------------
Q ss_conf ---79979999994274311199999999978991999918999999999999199965---------------------
Q 001837 510 ---SGASPVGIFCLSDACRTGAAEAVNQLKSLGIRTAMLTGDNQSAAMQAQEQLGNALN--------------------- 565 (1007)
Q Consensus 510 ---~d~~~lGli~l~D~lR~~a~~aI~~Lk~~GI~v~ilTGD~~~ta~~ia~~lGi~~~--------------------- 565 (1007)
.|++++|+++++|++||+++++|++|+++||+++|+|||+..+|..+|+++||...
T Consensus 583 ~~e~~l~~lG~i~i~Dplr~~~~~aI~~l~~aGI~v~miTGD~~~tA~~ia~~lgi~~~~~~~i~~~~~~~~~~~~~~~~ 662 (1028)
T 2zxe_A 583 FPTTDLCFVGLMAMIDPPRAAVPDAVGKCRSAGIKVIMVTGDHPITAKAIAKGVGIISEGNETIEDIAARLNIPIGQVNP 662 (1028)
T ss_dssp SCCSSEEEEEEEEEECCBCTTHHHHHHHHHHTTCEEEEECSSCHHHHHHHHHHHTSSCTTCCCHHHHHHHTTCCGGGSCG
T ss_pred HHHCCEEEEEEECCCCCCCHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCHHHCCC
T ss_conf 55438099865115789984489999999986997999889977999999998698878833677777641863222155
Q ss_pred ------------------------------EEEECCCHHHHHHHHHHHHHCC-EEEEECCCCCCHHHHHHCCEEEEECCC
Q ss_conf ------------------------------1983169867999999975389-099991994699987619931992899
Q 001837 566 ------------------------------VVHSELLPEDKAKIINQFKQEG-KTAMIGDGINDAPALATADIGISMGIS 614 (1007)
Q Consensus 566 ------------------------------~v~a~~~Pe~K~~iI~~lq~~g-~VamVGDG~ND~~aL~~AdVGIa~g~~ 614 (1007)
.+|+|++|++|..+|+.+|+.| .|+|+|||.||+|||++||||||||.+
T Consensus 663 ~~~~~~vi~G~~l~~~~~~~l~~~~~~~~~~v~ar~~P~~K~~iV~~lq~~g~~V~~iGDG~ND~paLk~AdvGIAmg~~ 742 (1028)
T 2zxe_A 663 RDAKACVVHGSDLKDLSTEVLDDILHYHTEIVFARTSPQQKLIIVEGCQRQGAIVAVTGDGVNDSPALKKADIGVAMGIS 742 (1028)
T ss_dssp GGCCEEEEEHHHHTTCCHHHHHHHHHHCSEEEEESCCHHHHHHHHHHHHHTTCCEEEEECSGGGHHHHHHSSEEEEESSS
T ss_pred CCCCEEEEECHHHHHCCHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHCCCEEEECCC
T ss_conf 56626998808856479999999986279679998588899999999996899899985885339999868911996776
Q ss_pred CCHHHHHHCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHH-------HHHHHHHHHHHHH
Q ss_conf 96878850499991699361999999999999999999999999999999999----965-------6899999999889
Q 001837 615 GSALATETGQVILMSNDIRKVPEAIRLARKAHWKVIENIAVSIATKAGIIALA----LGG-------HPLVWAAVLADVG 683 (1007)
Q Consensus 615 g~~~a~~~ADivl~~~~l~~I~~~I~~gR~~~~~i~~ni~~al~~nii~i~la----~~g-------~~~l~~a~l~~~~ 683 (1007)
|++.++++||+++.++++..|+.++.+||++++++++++.|.+++|+..+... +++ ++.+|.+++++.+
T Consensus 743 gtd~ak~aAD~Vl~~~~~~~I~~~i~~gR~i~~ni~k~i~~~l~~n~~~~~~~~~~~~~~~~~~l~~~qil~inl~~d~~ 822 (1028)
T 2zxe_A 743 GSDVSKQAADMILLDDNFASIVTGVEEGRLIFDNLKKSIAYTLTSNIPEITPFLVFIIGNVPLPLGTVTILCIDLGTDMV 822 (1028)
T ss_dssp CCHHHHHHCSEEETTCCTHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHCCCCSSCHHHHHHHHTTTTHH
T ss_pred CCHHHHHHCCEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
T ss_conf 58889985489955798779999999999999999999999999999999999999997666445799999999999999
Q ss_pred HHHHHHHH
Q ss_conf 89999995
Q 001837 684 TCLIVILN 691 (1007)
Q Consensus 684 ~~llvvlN 691 (1007)
+++.+.+.
T Consensus 823 pa~al~~e 830 (1028)
T 2zxe_A 823 PAISLAYE 830 (1028)
T ss_dssp HHHHGGGC
T ss_pred HHHHHCCC
T ss_conf 99986028
No 7
>3ixz_A Potassium-transporting ATPase alpha; ION pump, H+, K+-ATPase, P-type ATPase, membrane protein, hydrolase, aluminium fluoride, ATP-binding; 6.50A {Sus scrofa} PDB: 2yn9_A 2xzb_A 1iwc_A 1iwf_A
Probab=1.00 E-value=1 Score=703.38 Aligned_cols=619 Identities=18% Similarity=0.263 Sum_probs=474.5
Q ss_pred CCCHHHHHHHHH--------HCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHH
Q ss_conf 536899999842--------000011100246654456788137999999999999998320278987776665048999
Q 001837 58 LISQHQIVKALN--------QARFEANVRAYGGTSYQKKWPSPYAMACGVLLAISILKYVYHPLRWFALGAVAIGIFPII 129 (1007)
Q Consensus 58 ~~s~~~I~~aL~--------~~gy~a~~~~~g~~~~~~~~~~~~~~~~gill~~~l~~~~~~~l~~l~l~~~~~~~~p~~ 129 (1007)
..+.+++.+.+. ..+...++..+|+|....+.+.+++. .|+..|+.|+.++++++.++++....
T Consensus 55 ~~~~~~~~~~l~~~~~~GLs~~ea~~rl~~~G~N~l~~~~~~~~~~--------~~~~q~~~~~~~il~~aa~~~~~~~~ 126 (1034)
T 3ixz_A 55 QLSVAELEQKYQTSATKGLSASLAAELLLRDGPNALRPPRGTPEYV--------KFARQLAGGLQCLMWVAAAICLIAFA 126 (1034)
T ss_pred HCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCHHH--------HHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_conf 4999999998597912197999999999850999899989998899--------99999847389999999999999998
Q ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCC--EE
Q ss_conf 9999999727321889999999888743447999999999999999999999899999998640187616992199--89
Q 001837 130 LKGLAAIRNFKLDINILVLIAVIGTIAMNDYIEAGIIVFLFTIAEWLESRASHKATAVMSSLMSIAPQKAIIAGTG--EE 207 (1007)
Q Consensus 130 ~~a~~~lr~~~l~i~~Li~iai~~a~~~~~y~~a~~Il~l~~i~~~le~~~~~k~~~~l~~L~~~~p~~v~v~rdg--~~ 207 (1007)
... .. +. ......|+++++|++++.++..+..++++|+.+.++++.++.|.+++|+||| ++
T Consensus 127 ~~~---~~-~~-------------~~~~~~~~~~~~i~~vv~i~~~~~~~qe~ka~~al~~L~~l~~~~a~ViRdG~~~~ 189 (1034)
T 3ixz_A 127 IQA---SE-GD-------------LTTDDNLYLALALIAVVVVTGCFGYYQEFKSTNIIASFKNLVPQQATVIRDGDKFQ 189 (1034)
T ss_pred HHH---CC-CC-------------CCCCCCHHHHHHHHEEEEHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCEEEE
T ss_conf 740---34-77-------------76544205642430132279999999999999999997624897359999998999
Q ss_pred EECCCCCCCCEEEEECCCCCCCCEEEEECE-EEEECCCCCCCCEEEEECCC----------CEEEECEEEEEEEEEEEEE
Q ss_conf 618885559399982897225418999320-33323558898701682489----------8243100884310999999
Q 001837 208 VDAGEVKLNTVLAVKAGEVIPIDGIVVDGK-CEVDEKTLTGESYPVSKQKG----------STVWAGTINLNGYISVETT 276 (1007)
Q Consensus 208 V~~~dLv~GDII~I~~Ge~IPaDgiIl~G~-~~VDES~LTGES~pv~K~~g----------~~V~aGT~v~~G~~~~~V~ 276 (1007)
|++++|||||||.|++||+||||++|++|. +.||||+|||||.|+.|.++ |++|+||.+.+|.++++|+
T Consensus 190 I~~~eLv~GDiV~l~~Gd~VPAD~~ll~~~~l~VdES~LTGES~pv~K~~~~~~~~~~~~~n~~f~GT~v~~G~~~~vVv 269 (1034)
T 3ixz_A 190 INADQLVVGDLVEMKGGDRVPADIRILQAQGRKVDNSSLTGESEPQTRSPECTHESPLETRNIAFFSTMCLEGTAQGLVV 269 (1034)
T ss_pred EEHHHCCCCCEEEECCCCEECCCEEEEEECCCEEEECCCCCCCCCEECCCCCCCCCCCCCCCCEECCEEEEEECCEEEEE
T ss_conf 88898798858998579643587699970880588336678877766557776656323445122040698604249999
Q ss_pred EEECCEEEEHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCHH
Q ss_conf 97065077025877999620202899999899875769999999999998887158865678988754452103443124
Q 001837 277 AVAEDCVVAKMAKLVEEAQNSKSRIQRFVDKFSQYYTPAVIFISACVAVIPIALGVSNHKQWFHLALVVLVSACPCALIL 356 (1007)
Q Consensus 277 ~tG~~T~~~ki~~lv~~a~~~ks~~q~~~~~ia~~~~~ivliiali~~ii~~~~~~~~~~~~~~~ai~vLi~a~P~aL~l 356 (1007)
+||.+|.+|++.+++..++..++|+++.++++..++..+++++++++++++++.+ .++...+.+++++++++||++|++
T Consensus 270 ~tG~~T~~GkI~~~~~~~~~~~tpl~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~l~v~~iPe~Lp~ 348 (1034)
T 3ixz_A 270 NTGDRTIIGRIASLASGVENEKTPIAIEIEHFVDIIAGLAILFGATFFIVAMCIG-YTFLRAMVFFMAIVVAYVPEGLLA 348 (1034)
T ss_pred EEHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CHHHHHHHHHHHHHHHEECCCCHH
T ss_conf 6025437408998620356678918999999999999999999999999999964-129999999999988202665089
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCHHHHHHCCCCCEEEECCCCCCCCCCEEEEEEECCCCCCC------------------H
Q ss_conf 4799999999999773981112236643047439974276541029349999623887789------------------8
Q 001837 357 STPVVTYCALTKAATSGLLIKGGDYLQTLAKVRFMAFDKTGTITRGEFVMSEFQPLSEDIN------------------L 418 (1007)
Q Consensus 357 a~~ia~~~a~~~l~k~gilvk~~~~lE~Lg~Vd~I~fDKTGTLT~~~m~v~~i~~~~~~~~------------------~ 418 (1007)
++++++..+..+|+++++++|++.++|+||++++||||||||||+|+|.|.+++..+..+. .
T Consensus 349 ~vti~la~~~~rmak~~~lvr~l~avE~LG~v~~IcsDKTGTLT~n~m~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 428 (1034)
T 3ixz_A 349 TVTVCLSLTAKRLASKNCVVKNLEAVETLGSTSVICSDKTGTLTQNRMTVSHLWFDNHIHSADTTEDQSGQTFDQSSETW 428 (1034)
T ss_pred HHHHHHHHHHHHHHHCCEEECCHHHHHHHCCCCEEECCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCHHH
T ss_conf 99999999999873388286476788861587299728978723683799999977951225676665665567677899
Q ss_pred HHHHHHHHHHH----------------HCCCCHHHHHHHHHHHHCCCCCCC--CCCCCCEECCCCC---EEE---EE-C-
Q ss_conf 99999999421----------------029994899999983617999998--7755510005982---399---99-8-
Q 001837 419 NTLLYWVSSIE----------------SKSSHPMSAALVEYGRSLSIEPKP--EDVEDYQNFPGEG---IYG---KI-G- 472 (1007)
Q Consensus 419 ~~lL~~aa~~e----------------~~s~hPi~~AI~~~a~~~g~~~~~--~~v~~~~~~~g~G---i~~---~i-~- 472 (1007)
..++..++.+. ...++|.+.|++.++...+.+... ........+|... ... .. +
T Consensus 429 ~~l~~~~~lc~~a~~~~~~~~~~~~~~~~~gdp~e~All~~~~~~~~~~~~~~~~~~~~~~~pF~s~rk~m~~v~~~~~~ 508 (1034)
T 3ixz_A 429 RALCRVLTLCNRAAFKSGQDAVPVPKRIVIGDASETALLKFSELTLGNAMGYRERFPKVCEIPFNSTNKFQLSIHTLEDP 508 (1034)
T ss_pred HHHHHHHHHHCCCEECCCCCCCCCCCCEECCCCHHHHHHHHHHHHCCCHHHHHHHCCCEEEEEECCCCCEEEEEEEECCC
T ss_conf 99999988716266535767776657435549259999999998578868889748606995035777268999983378
Q ss_pred --CE--EEEEECHHHHHHHCC------CCCC-----------CCCCCCCCCCEEE------------------------E
Q ss_conf --89--999704888998099------9988-----------8679677997299------------------------9
Q 001837 473 --GE--EIYIGNRKIAQRAGC------GTVP-----------SVDGPKMKGNTIG------------------------Y 507 (1007)
Q Consensus 473 --g~--~i~ig~~~~~~~~~~------~~~~-----------~~~~~~~~g~~vi------------------------~ 507 (1007)
+. .+..|.++.+-.... ...+ ..+.+..+|.+++ +
T Consensus 509 ~~~~~~l~~KGApe~il~~c~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~G~RvLa~A~~~l~~~~~~~~~~~~~~~~~~ 588 (1034)
T 3ixz_A 509 RDPRHVLVMKGAPERVLERCSSILIKGQELPLDEQWREAFQTAYLSLGGLGERVLGFCQLYLSEKDYPPGYAFDVEAMNF 588 (1034)
T ss_pred CCCCEEEEEECCHHHHHHHHHHHHCCCCEECCCHHHHHHHHHHHHHHHHCCCHHHEEEEEECCHHHCCCCCCCCHHHHHC
T ss_conf 88608999968849999973775528964019999999999999998714758236867855800043211245344302
Q ss_pred EEECCEEEEEEEECCCCCCCHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHCCCCC----------------------
Q ss_conf 9879979999994274311199999999978991999918999999999999199965----------------------
Q 001837 508 IFSGASPVGIFCLSDACRTGAAEAVNQLKSLGIRTAMLTGDNQSAAMQAQEQLGNALN---------------------- 565 (1007)
Q Consensus 508 va~d~~~lGli~l~D~lR~~a~~aI~~Lk~~GI~v~ilTGD~~~ta~~ia~~lGi~~~---------------------- 565 (1007)
++.|++|+|+++++||+|++++++|++|+++||+++|+|||+..+|..+++++|+...
T Consensus 589 ~e~~l~~lGlv~i~Dp~r~~~~~aI~~l~~aGI~vvmiTGd~~~tA~~ia~~lgi~~~~~~~i~~~~~~~~~~~~~~~~~ 668 (1034)
T 3ixz_A 589 PTSGLSFAGLVSMIDPPRATVPDAVLKCRTAGIRVIMVTGDHPITAKAIAASVGIISEGSETVEDIAARLRVPVDQVNRK 668 (1034)
T ss_pred CCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCHHCCCC
T ss_conf 22486798887136887065999999999869969999699779999999986999887247888887617650002544
Q ss_pred -----------------------------EEEECCCHHHHHHHHHHHHHCC-EEEEECCCCCCHHHHHHCCEEEEECCCC
Q ss_conf -----------------------------1983169867999999975389-0999919946999876199319928999
Q 001837 566 -----------------------------VVHSELLPEDKAKIINQFKQEG-KTAMIGDGINDAPALATADIGISMGISG 615 (1007)
Q Consensus 566 -----------------------------~v~a~~~Pe~K~~iI~~lq~~g-~VamVGDG~ND~~aL~~AdVGIa~g~~g 615 (1007)
.+|+|++|++|..+++.+|+.| .|+|+|||.||+|||++||+|||||.+|
T Consensus 669 ~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~v~ar~~P~~K~~iv~~lq~~g~~V~a~GDG~ND~~mLk~A~vGIAMg~ng 748 (1034)
T 3ixz_A 669 DARACVINGMQLKDMDPSELVEALRTHPEMVFARTSPQQKLVIVESCQRLGAIVAVTGDGVNDSPALKKADIGVAMGIAG 748 (1034)
T ss_pred CCCEEEEECHHHHHCCHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHCCEEEEECCCC
T ss_conf 54316771676663899999999873782699966989999999999976999999879577699999789329807756
Q ss_pred CHHHHHHCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHH-------HHHHHHHHHHHHHH
Q ss_conf 6878850499991699361999999999999999999999999999999999----965-------68999999998898
Q 001837 616 SALATETGQVILMSNDIRKVPEAIRLARKAHWKVIENIAVSIATKAGIIALA----LGG-------HPLVWAAVLADVGT 684 (1007)
Q Consensus 616 ~~~a~~~ADivl~~~~l~~I~~~I~~gR~~~~~i~~ni~~al~~nii~i~la----~~g-------~~~l~~a~l~~~~~ 684 (1007)
++.++++||+++.++++.+++.++++||++++|+++++.|.+++|+..++.. +++ ++.+|.++++|.++
T Consensus 749 ~d~aK~aAD~Vl~~~~~~gI~~ai~~GR~i~~ni~k~i~~~l~~ni~~~~~~~~~~~~~~~~pl~~~qiL~inl~~d~~p 828 (1034)
T 3ixz_A 749 SDAAKNAADMILLDDNFASIVTGVEQGRLIFDNLKKSIAYTLTKNIPELTPYLIYITVSVPLPLGCITILFIELCTDIFP 828 (1034)
T ss_pred CHHHHHHCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 79999854999666883399999999889999999999999999999999999999982146689999999999988888
Q ss_pred HHHHHHH--HHHHCCCCCCC
Q ss_conf 9999995--34210224689
Q 001837 685 CLIVILN--SMLLLHETHTH 702 (1007)
Q Consensus 685 ~llvvlN--S~rll~~~~~~ 702 (1007)
++.+.+. .--+++++|+.
T Consensus 829 alal~~e~~~~~~m~~~Pr~ 848 (1034)
T 3ixz_A 829 SVSLAYEKAESDIMHLRPRN 848 (1034)
T ss_pred HHHHHCCCCCHHHHHCCCCC
T ss_conf 88851688973266479989
No 8
>3ar4_A Sarcoplasmic/endoplasmic reticulum calcium ATPase; P-type ATPase, hydrolase, calcium transport, calcium binding binding; HET: ATP TG1 PTY; 2.15A {Oryctolagus cuniculus} PDB: 2ear_A* 2eas_A* 2eat_A* 2eau_A* 2dqs_A* 2zbe_A 2zbf_A* 2zbg_A* 3ar2_A* 2zbd_A* 3ar3_A* 3ar5_A* 3ar6_A* 3ar7_A* 3ar8_A* 3ar9_A* 3n5k_A* 1kju_A 1iwo_A 1t5s_A* ...
Probab=1.00 E-value=1 Score=694.89 Aligned_cols=613 Identities=18% Similarity=0.253 Sum_probs=467.6
Q ss_pred CHHHHHHHHH--------HCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHH
Q ss_conf 6899999842--------00001110024665445678813799999999999999832027898777666504899999
Q 001837 60 SQHQIVKALN--------QARFEANVRAYGGTSYQKKWPSPYAMACGVLLAISILKYVYHPLRWFALGAVAIGIFPIILK 131 (1007)
Q Consensus 60 s~~~I~~aL~--------~~gy~a~~~~~g~~~~~~~~~~~~~~~~gill~~~l~~~~~~~l~~l~l~~~~~~~~p~~~~ 131 (1007)
+.+++.+.+. ..+...++..+|+|....+.+.+++. .++..|..++.++++++.+++..+-+.
T Consensus 9 ~~~~~~~~l~~~~~~GLs~~e~~~r~~~~G~N~l~~~~~~~~~~--------~~~~qf~~~~~~~l~~~a~~s~~~~~~- 79 (995)
T 3ar4_A 9 STEECLAYFGVSETTGLTPDQVKRHLEKYGHNELPAEEGKSLWE--------LVIEQFEDLLVRILLLAACISFVLAWF- 79 (995)
T ss_dssp CHHHHHHHHTCCTTTCBCHHHHHHHHHHHCCSSCCCCCCCCHHH--------HHHGGGCSHHHHHHHHHHHHHHHHTTS-
T ss_pred CHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_conf 99999998589966698999999999756887328988986999--------999999889999999999999998860-
Q ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCC----EE
Q ss_conf 99999727321889999999888743447999999999999999999999899999998640187616992199----89
Q 001837 132 GLAAIRNFKLDINILVLIAVIGTIAMNDYIEAGIIVFLFTIAEWLESRASHKATAVMSSLMSIAPQKAIIAGTG----EE 207 (1007)
Q Consensus 132 a~~~lr~~~l~i~~Li~iai~~a~~~~~y~~a~~Il~l~~i~~~le~~~~~k~~~~l~~L~~~~p~~v~v~rdg----~~ 207 (1007)
..+ ...+..|++++++++++.++..+..++++|+++.+++|.++.|.+++|+|+| ++
T Consensus 80 -----~~~--------------~~~~~~~~~~~~i~~~~~~~~~i~~~qe~~a~~al~~L~~~~~~~a~V~R~g~~~~~~ 140 (995)
T 3ar4_A 80 -----EEG--------------EETITAFVEPFVILLILIANAIVGVWQERNAENAIEALKEYEPEMGKVYRADRKSVQR 140 (995)
T ss_dssp -----CCS--------------SGGGSSSHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHGGGSCSEEEEEBTTCSSCEE
T ss_pred -----CCC--------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCEEEE
T ss_conf -----256--------------6540347876886678899999999999999999999871089738999379864799
Q ss_pred EECCCCCCCCEEEEECCCCCCCCEEEEEC---EEEEECCCCCCCCEEEEECCC-------------CEEEECEEEEEEEE
Q ss_conf 61888555939998289722541899932---033323558898701682489-------------82431008843109
Q 001837 208 VDAGEVKLNTVLAVKAGEVIPIDGIVVDG---KCEVDEKTLTGESYPVSKQKG-------------STVWAGTINLNGYI 271 (1007)
Q Consensus 208 V~~~dLv~GDII~I~~Ge~IPaDgiIl~G---~~~VDES~LTGES~pv~K~~g-------------~~V~aGT~v~~G~~ 271 (1007)
|++++|+|||+|.|++||+||||++|+++ ++.||||+|||||.|+.|.++ +++|+||.|.+|.+
T Consensus 141 I~~~~lv~GDiV~l~~Gd~IPaD~~ll~~~s~~l~VdeS~LTGES~pv~K~~~~~~~~~~~~~~~~~~v~~GT~v~~G~~ 220 (995)
T 3ar4_A 141 IKARDIVPGDIVEVAVGDKVPADIRILSIKSTTLRVDQSILTGESVSVIKHTEPVPDPRAVNQDKKNMLFSGTNIAAGKA 220 (995)
T ss_dssp EEGGGCCTTCEEEEETTCBCCSEEEEEEECSSCEEEECHHHHCCCSCEEECCSCCCCTTCCGGGCTTEECTTCEEEECEE
T ss_pred EEHHHCCCCCEEEECCCCCCCCCEEEEEEEECEEEEECCCCCCCCCCEECCCCCCCCCCCCCCCCCCEEECCCEEECCEE
T ss_conf 78999877878998897843544899988504399982524688763340045667766675554546761878984458
Q ss_pred EEEEEEEECCEEEEHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-----CCH----HHHHHHH
Q ss_conf 9999997065077025877999620202899999899875769999999999998887158-----865----6789887
Q 001837 272 SVETTAVAEDCVVAKMAKLVEEAQNSKSRIQRFVDKFSQYYTPAVIFISACVAVIPIALGV-----SNH----KQWFHLA 342 (1007)
Q Consensus 272 ~~~V~~tG~~T~~~ki~~lv~~a~~~ks~~q~~~~~ia~~~~~ivliiali~~ii~~~~~~-----~~~----~~~~~~a 342 (1007)
+++|++||.+|.++++.+++.+++..++|+|+.+++++.++++++++++++++++++.... .++ ...+..+
T Consensus 221 ~~~V~~tG~~T~~g~i~~~~~~~~~~~tplq~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 300 (995)
T 3ar4_A 221 LGIVATTGVSTEIGKIRDQMAATEQDKTPLQQKLDEFGEQLSKVISLICVAVWLINIGHFNDPVHGGSWIRGAIYYFKIA 300 (995)
T ss_dssp EEEEEECGGGSHHHHHHHHHHTCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTGGGGGSCSSSSCHHHHHHHHHHHH
T ss_pred EEEEEECCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH
T ss_conf 99999767221989999973257878993899999999999999999999999999987414334640799999999999
Q ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHCCCCCEEEECCCCCCCCCCEEEEEEECCCC--------
Q ss_conf 544521034431244799999999999773981112236643047439974276541029349999623887--------
Q 001837 343 LVVLVSACPCALILSTPVVTYCALTKAATSGLLIKGGDYLQTLAKVRFMAFDKTGTITRGEFVMSEFQPLSE-------- 414 (1007)
Q Consensus 343 i~vLi~a~P~aL~la~~ia~~~a~~~l~k~gilvk~~~~lE~Lg~Vd~I~fDKTGTLT~~~m~v~~i~~~~~-------- 414 (1007)
+++++++|||+|++++|+++..+..+|+++|+++|++.++|+||++++||||||||||+|+|+|.+++..+.
T Consensus 301 i~l~v~aiP~~Lp~~vt~~la~~~~~ma~~~~lvr~~~~iE~Lg~v~~ic~DKTGTLT~n~m~v~~~~~~~~~~~~~~~~ 380 (995)
T 3ar4_A 301 VALAVAAIPEGLPAVITTCLALGTRRMAKKNAIVRSLPSVETLGCTSVICSDKTGTLTTNQMSVCKMFIIDKVDGDFCSL 380 (995)
T ss_dssp HHHHHHHSCTTHHHHHHHHHHHHHHHHHHTTEEESCTTHHHHHHTCCEEEEESTTTTBCCCCEEEEEEEEEEEETTEEEE
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCEECCCHHHHHHCCCEEEEECCCCCCCCCCEEEEEEEECCCCCCCCCCC
T ss_conf 99999866760489999999999998441784861341555503833997658887665856999998347556765543
Q ss_pred --------CCC-------------------HHHHHHHHHHHH-------------HCCCCHHHHHHHHHHHHCCC-CCCC
Q ss_conf --------789-------------------899999999421-------------02999489999998361799-9998
Q 001837 415 --------DIN-------------------LNTLLYWVSSIE-------------SKSSHPMSAALVEYGRSLSI-EPKP 453 (1007)
Q Consensus 415 --------~~~-------------------~~~lL~~aa~~e-------------~~s~hPi~~AI~~~a~~~g~-~~~~ 453 (1007)
.+. ...++...+.+. ...++|.+.|++.++...++ +...
T Consensus 381 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~alc~~~~~~~~~~~~~~~~~g~p~E~Al~~~a~~~g~~~~~~ 460 (995)
T 3ar4_A 381 NEFSITGSTYAPEGEVLKNDKPIRSGQFDGLVELATICALCNDSSLDFNETKGVYEKVGEATETALTTLVEKMNVFNTEV 460 (995)
T ss_dssp EEEEECCSSSSSCCCEEETTEECCGGGCHHHHHHHHHHHHSCCCEEEEETTTTEEEEESCHHHHHHHHHHHHHCTTCCCC
T ss_pred CEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHCCCCCCCC
T ss_conf 02540477768863101366434444558999999999874888056568898325547964799999999839964100
Q ss_pred CC--C------------CCCE---ECCC----CC--EEEEE-CC-------EEEEEECHHHHHHHCCCC-----------
Q ss_conf 77--5------------5510---0059----82--39999-88-------999970488899809999-----------
Q 001837 454 ED--V------------EDYQ---NFPG----EG--IYGKI-GG-------EEIYIGNRKIAQRAGCGT----------- 491 (1007)
Q Consensus 454 ~~--v------------~~~~---~~~g----~G--i~~~i-~g-------~~i~ig~~~~~~~~~~~~----------- 491 (1007)
.. . ..++ .+|. +. +.... +| ..+..|..+.+....-..
T Consensus 461 ~~i~~~~~~~~~~~~~~~~~~~~~~~pF~s~rk~msvi~~~~~g~~~~~~~~~~~KGa~e~il~~c~~~~~~~~~~~l~~ 540 (995)
T 3ar4_A 461 RNLSKVERANACNSVIRQLMKKEFTLEFSRDRKSMSVYCSPAKSSRAAVGNKMFVKGAPEGVIDRCNYVRVGTTRVPMTG 540 (995)
T ss_dssp TTSCTTTSTTHHHHHHHHHEEEEEEEEEETTTTEEEEEEEESSCCSCSCCCEEEEEECHHHHHHTEEEEEETTEEEECCH
T ss_pred CCCCCCCCCCCCHHHHHHHCCEEEEEECCCCCCEEEEEEECCCCCCCCCCEEEEECCCHHHHHHHCCHHHCCCCCCCCCH
T ss_conf 01342010121015566417457774048888756999834898766644499975887999985405442897324999
Q ss_pred ------CCCCCCC--CCCCCEEEEEE-----------------------ECCEEEEEEEECCCCCCCHHHHHHHHHHCCC
Q ss_conf ------8886796--77997299998-----------------------7997999999427431119999999997899
Q 001837 492 ------VPSVDGP--KMKGNTIGYIF-----------------------SGASPVGIFCLSDACRTGAAEAVNQLKSLGI 540 (1007)
Q Consensus 492 ------~~~~~~~--~~~g~~vi~va-----------------------~d~~~lGli~l~D~lR~~a~~aI~~Lk~~GI 540 (1007)
....+.+ ..+|.+++.++ .|++++|+++++|++|++++++|+.|+++||
T Consensus 541 ~~~~~~~~~~~~~~~a~~GlRvLa~A~k~~~~~~~~~~~~~~~~~~~~e~~l~~lG~~~i~D~lr~~~~~~I~~l~~~Gi 620 (995)
T 3ar4_A 541 PVKEKILSVIKEWGTGRDTLRCLALATRDTPPKREEMVLDDSSRFMEYETDLTFVGVVGMLDPPRKEVMGSIQLCRDAGI 620 (995)
T ss_dssp HHHHHHHHHHHHHHHSTTCCEEEEEEEESSCCCGGGCCTTCGGGHHHHTCSEEEEEEEEEECCBCTTHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHCCCEEEEEEEEECCCCCCCCCCCCCHHHHHHCCCCEEEEEEEECCCCCHHHHHHHHHHHHCCC
T ss_conf 99999999999877630561488999983476511122234024455306948999985258896669999999998699
Q ss_pred EEEEECCCCHHHHHHHHHHHCCCCC-----------------------------EEEECCCHHHHHHHHHHHHHCC-EEE
Q ss_conf 1999918999999999999199965-----------------------------1983169867999999975389-099
Q 001837 541 RTAMLTGDNQSAAMQAQEQLGNALN-----------------------------VVHSELLPEDKAKIINQFKQEG-KTA 590 (1007)
Q Consensus 541 ~v~ilTGD~~~ta~~ia~~lGi~~~-----------------------------~v~a~~~Pe~K~~iI~~lq~~g-~Va 590 (1007)
+++|+|||+..+|..+|+++|+... .+|+|++|++|..+|+.+|+.| .|+
T Consensus 621 ~v~miTGD~~~ta~~ia~~lgi~~~~~~i~~~~~~g~~~~~l~~~~~~~~~~~~~v~~r~~P~~K~~~v~~l~~~g~~v~ 700 (995)
T 3ar4_A 621 RVIMITGDNKGTAIAICRRIGIFGENEEVADRAYTGREFDDLPLAEQREACRRACCFARVEPSHKSKIVEYLQSYDEITA 700 (995)
T ss_dssp EEEEEESSCHHHHHHHHHHHTSSCTTCCCTTTEEEHHHHHTSCHHHHHHHHHHCCEEESCCSSHHHHHHHHHHTTTCCEE
T ss_pred EEEEECCCCHHHHHHHHHHCCCCCCCCCCCCEEEECHHHHHCCHHHHHHHHHHCCEEEEECHHHHHHHHHHHHHCCCEEE
T ss_conf 89998999789999999983967788753534898366462899999998753738997089999999999997799799
Q ss_pred EECCCCCCHHHHHHCCEEEEECCCCCHHHHHHCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----H
Q ss_conf 991994699987619931992899968788504999916993619999999999999999999999999999999----9
Q 001837 591 MIGDGINDAPALATADIGISMGISGSALATETGQVILMSNDIRKVPEAIRLARKAHWKVIENIAVSIATKAGIIA----L 666 (1007)
Q Consensus 591 mVGDG~ND~~aL~~AdVGIa~g~~g~~~a~~~ADivl~~~~l~~I~~~I~~gR~~~~~i~~ni~~al~~nii~i~----l 666 (1007)
|+|||.||+|||++||+||||| +|++.++++||+++.++++..++.++.+||++++++++++.|.+++|+..++ .
T Consensus 701 ~~GDG~ND~~alk~Advgiamg-~g~~~ak~aAd~vl~~~~~~~i~~~i~~GR~~~~~i~k~i~~~l~~Ni~~~~~~~~~ 779 (995)
T 3ar4_A 701 MTGDGVNDAPALKKAEIGIAMG-SGTAVAKTASEMVLADDNFSTIVAAVEEGRAIYNNMKQFIRYLISSNVGEVVCIFLT 779 (995)
T ss_dssp EEECSGGGHHHHHHSTEEEEET-TSCHHHHHTCSEEETTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EECCCCHHHHHHHHCCEEEEEC-CCCHHHHHHCCEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9838814499998789679967-889999973889977787789999999989999999999999999999999999999
Q ss_pred HHHHH-------HHHHHHHHHHHHHHHHHHHH--HHHHCCCCCC
Q ss_conf 99656-------89999999988989999995--3421022468
Q 001837 667 ALGGH-------PLVWAAVLADVGTCLIVILN--SMLLLHETHT 701 (1007)
Q Consensus 667 a~~g~-------~~l~~a~l~~~~~~llvvlN--S~rll~~~~~ 701 (1007)
+++|+ +.+|.+++++.++++.+.+. ...+++++|+
T Consensus 780 ~~~g~~~pl~~~qil~~nl~~d~~p~l~l~~~~~~~~~m~~~P~ 823 (995)
T 3ar4_A 780 AALGLPEALIPVQLLWVNLVTDGLPATALGFNPPDLDIMDRPPR 823 (995)
T ss_dssp HHTTCCCSSCHHHHHHHHHTTTHHHHHHHTTCCCCTTGGGSCCC
T ss_pred HHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCC
T ss_conf 99847625789999999999988777763067777568737999
No 9
>2yj3_A Copper-transporting ATPase; hydrolase, P-type ATPase, COPB, heavy metal translocation; 2.20A {Sulfolobus solfataricus} PDB: 2iye_A 2yj6_A* 2yj5_A* 2yj4_A*
Probab=1.00 E-value=1 Score=306.58 Aligned_cols=259 Identities=31% Similarity=0.536 Sum_probs=235.1
Q ss_pred HHHHHHHHCCCCCCCHHHHHHCCCCCEEEECCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHH
Q ss_conf 99999977398111223664304743997427654102934999962388778989999999942102999489999998
Q 001837 364 CALTKAATSGLLIKGGDYLQTLAKVRFMAFDKTGTITRGEFVMSEFQPLSEDINLNTLLYWVSSIESKSSHPMSAALVEY 443 (1007)
Q Consensus 364 ~a~~~l~k~gilvk~~~~lE~Lg~Vd~I~fDKTGTLT~~~m~v~~i~~~~~~~~~~~lL~~aa~~e~~s~hPi~~AI~~~ 443 (1007)
.++.+++++||++|++.++|.|+++++|+||||||||+|++.+.++. +.++++.++++++..+.||+++|+..+
T Consensus 4 ~a~~~~~~~gil~k~~~~le~l~~i~~v~fDktGTLT~g~~~v~~~~------~~~~~l~~~~~~e~~s~hp~a~ai~~~ 77 (263)
T 2yj3_A 4 SLYEKMLHKGMIIKNSNVYEKIKEIDTIIFEKTGTLTYGTPIVTQFI------GDSLSLAYAASVEALSSHPIAKAIVKY 77 (263)
Q ss_pred HHHCCCCCCCCCCCCCEECCCCCEEEEECCEEEEEECHHHHHHHCCCCCCCCCCCCCCCCEEEEEEECCEEEEEEEECCC
Q ss_conf 36179999987755510005982399998899997048889980999988867967799729999879979999994274
Q 001837 444 GRSLSIEPKPEDVEDYQNFPGEGIYGKIGGEEIYIGNRKIAQRAGCGTVPSVDGPKMKGNTIGYIFSGASPVGIFCLSDA 523 (1007)
Q Consensus 444 a~~~g~~~~~~~v~~~~~~~g~Gi~~~i~g~~i~ig~~~~~~~~~~~~~~~~~~~~~~g~~vi~va~d~~~lGli~l~D~ 523 (1007)
+...++.+ .....++.++|.|+...+++..+.+|+.. .+.+ ++++.+..+.|.+.+.++
T Consensus 78 ~~~~g~~~--~~~~~~~~~~G~g~~~~~~~~~~~~G~~~------------------~~~~-~~~~~~~~~~~~~~~~~~ 136 (263)
T 2yj3_A 78 AKEQGVKI--LEVKDFKEISGIGVRGKISDKIIEVKKAE------------------NNND-IAVYINGEPIASFNISDV 136 (263)
Q ss_pred CCCCHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHHCC-EEEEECCCCCCHHHH
Q ss_conf 3111999999999789919999189999999999991999651983169867999999975389-099991994699987
Q 001837 524 CRTGAAEAVNQLKSLGIRTAMLTGDNQSAAMQAQEQLGNALNVVHSELLPEDKAKIINQFKQEG-KTAMIGDGINDAPAL 602 (1007)
Q Consensus 524 lR~~a~~aI~~Lk~~GI~v~ilTGD~~~ta~~ia~~lGi~~~~v~a~~~Pe~K~~iI~~lq~~g-~VamVGDG~ND~~aL 602 (1007)
++|++.++++.|++.|++++|+|||+...+..+++++|+. .+|..+.|++|..+++.++..+ .++||||+.||++++
T Consensus 137 ~~~g~~~~l~~L~~~g~~~~i~T~~~~~~~~~~~~~~gl~--~~f~~~~p~~k~~~~~~l~~~~~~~~~VGD~~~D~~aa 214 (263)
T 2yj3_A 137 PRPNLKDYLEKLKNEGLKIIILSGDKEDKVKELSKELNIQ--EYYSNLSPEDKVRIIEKLKQNGNKVLMIGDGVNDAAAL 214 (263)
Q ss_pred HHCCEEEEECCCCCHHHHHHCCEEEECCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 61993199289996878850499991699361999999999999999999
Q 001837 603 ATADIGISMGISGSALATETGQVILMSNDIRKVPEAIRLARKAHWKVIEN 652 (1007)
Q Consensus 603 ~~AdVGIa~g~~g~~~a~~~ADivl~~~~l~~I~~~I~~gR~~~~~i~~n 652 (1007)
++|++|++++ .+.+...+.+|++++++++..++.++.++|+++++|+||
T Consensus 215 ~~Agv~va~g-~~~~~~~~~ad~v~~~~~l~~l~~~l~~~r~~~~~i~~n 263 (263)
T 2yj3_A 215 ALADVSVAMG-NGVDISKNVADIILVSNDIGTLLGLIKNRKRLSNAIPSN 263 (263)
No 10
>3skx_A Copper-exporting P-type ATPase B; P1B-ATPase, ATP binding domain, copper(II) transporter, MEMB protein, hydrolase; 1.59A {Archaeoglobus fulgidus} PDB: 3sky_A*
Probab=1.00 E-value=1 Score=249.51 Aligned_cols=277 Identities=34% Similarity=0.549 Sum_probs=251.9
Q ss_pred CCCHHHHHHCCCCCEEEECCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 11223664304743997427654102934999962388778989999999942102999489999998361799999877
Q 001837 376 IKGGDYLQTLAKVRFMAFDKTGTITRGEFVMSEFQPLSEDINLNTLLYWVSSIESKSSHPMSAALVEYGRSLSIEPKPED 455 (1007)
Q Consensus 376 vk~~~~lE~Lg~Vd~I~fDKTGTLT~~~m~v~~i~~~~~~~~~~~lL~~aa~~e~~s~hPi~~AI~~~a~~~g~~~~~~~ 455 (1007)
+|++.++|.+++++.|+||++||||.+++.|..+..... +...++.+++.++..+.+++..++..+....+... ..
T Consensus 1 ~k~~~~~e~~~~ik~i~FD~DGTL~d~~~~v~~~~~~~~--~~~~~~~~~~~~~~~s~~~~~~a~~~~~~~~g~~~--~~ 76 (280)
T 3skx_A 1 MRDRQAFERAKDLQAVIFDKTGTLTEGRFGVTDIVGFNH--SEDELLQIAASLEARSEHPIAAAIVEEAEKRGFGL--TE 76 (280)
T ss_dssp ----CHHHHGGGCCEEEEECCCCCEEEEEEEEEEEESSS--CHHHHHHHHHHHHTTCCSHHHHHHHHHHHHTTCCC--CC
T ss_pred CCCHHHHHHHCCCCEEEEECCCCCCCCCEEEEEEEECCC--CHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCC--CC
T ss_conf 988599997648999999699868789679999980699--98999999999635698978999999999628998--88
Q ss_pred CCCCEECCCCCEEEEECCEEEEEECHHHHHHHCCCCCCCCCCCCCCCCEEEEEEECCEEEEEEEECCCCCCCHHHHHHHH
Q ss_conf 55510005982399998899997048889980999988867967799729999879979999994274311199999999
Q 001837 456 VEDYQNFPGEGIYGKIGGEEIYIGNRKIAQRAGCGTVPSVDGPKMKGNTIGYIFSGASPVGIFCLSDACRTGAAEAVNQL 535 (1007)
Q Consensus 456 v~~~~~~~g~Gi~~~i~g~~i~ig~~~~~~~~~~~~~~~~~~~~~~g~~vi~va~d~~~lGli~l~D~lR~~a~~aI~~L 535 (1007)
...+....+.++...+++..+.+++..+....+.............+....++..+..+++.+.+.++++|++.++++.|
T Consensus 77 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 156 (280)
T 3skx_A 77 VEEFRAIPGKGVEGIVNGRRYMVVSPGYIRELGIKTDESVEKLKQQGKTVVFILKNGEVSGVIALADRIRPESREAISKL 156 (280)
T ss_dssp CEEEEEETTTEEEEEETTEEEEEECHHHHHHTTCCCCTTHHHHHTTTCEEEEEEETTEEEEEEEEEEEECTTHHHHHHHH
T ss_pred CCCEEECCCCEEEEEECCEEEEEECHHHHHHCCCCCHHHHHHHHHCCCEEEEEEECCEEEEEEEECCCCCHHHHHHHHHH
T ss_conf 43415537777999999989999469999774997257899987479869999999999999996277887699999999
Q ss_pred HHCCCEEEEECCCCHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHHCCEEEEECCCCCCHHHHHHCCEEEEECCCC
Q ss_conf 97899199991899999999999919996519831698679999999753890999919946999876199319928999
Q 001837 536 KSLGIRTAMLTGDNQSAAMQAQEQLGNALNVVHSELLPEDKAKIINQFKQEGKTAMIGDGINDAPALATADIGISMGISG 615 (1007)
Q Consensus 536 k~~GI~v~ilTGD~~~ta~~ia~~lGi~~~~v~a~~~Pe~K~~iI~~lq~~g~VamVGDG~ND~~aL~~AdVGIa~g~~g 615 (1007)
++.|+++.++||+....+..+.+.+|+. .+|..+.|.+|...++.+.+...++||||+.||++|++.|++|++|+ ++
T Consensus 157 ~~~g~~~~i~T~~~~~~~~~~~~~~gl~--~~f~~~~~~~k~~~~k~~~~~~~~~~vGD~~nDi~~~~~Ag~~va~~-~~ 233 (280)
T 3skx_A 157 KAIGIKCMMLTGDNRFVAKWVAEELGLD--DYFAEVLPHEKAEKVKEVQQKYVTAMVGDGVNDAPALAQADVGIAIG-AG 233 (280)
T ss_dssp HHTTCEEEEECSSCHHHHHHHHHHHTCS--EEECSCCGGGHHHHHHHHHTTSCEEEEECTTTTHHHHHHSSEEEECS-CC
T ss_pred HHCCCEEEEEECCCHHHHHHHHHHCCCH--HHHHHCCHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHCCCEEEEC-CC
T ss_conf 9888979999598989999999984974--47674697889999999996699899968804699998589319964-77
Q ss_pred CHHHHHHCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 68788504999916993619999999999999999999999999
Q 001837 616 SALATETGQVILMSNDIRKVPEAIRLARKAHWKVIENIAVSIAT 659 (1007)
Q Consensus 616 ~~~a~~~ADivl~~~~l~~I~~~I~~gR~~~~~i~~ni~~al~~ 659 (1007)
.+..+..||+++..+++..+..++.++|++++++++|+.|++..
T Consensus 234 ~~~~~~~a~~~~~~~~~~~l~~~l~~~~~~~~~~~~n~~~~~~~ 277 (280)
T 3skx_A 234 TDVAVETADIVLVRNDPRDVAAIVELSRKTYSKFHGLSAWSHPQ 277 (280)
T ss_dssp SSSCCCSSSEECSSCCTHHHHHHHHHHHTCCC------------
T ss_pred CHHHHHHCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 68889658999957998999999999999999999999999865
Done!