Query 001838
Match_columns 1007
No_of_seqs 526 out of 6192
Neff 9.3
Searched_HMMs 29240
Date Tue Mar 26 16:11:58 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/001838.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1135-1139//hhsearch_pdb/001838hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 1.0 1 1 723.5 44.4 624 18-655 5-752 (768)
2 3rgz_A Protein brassinosteroid 1.0 1 1 575.7 35.0 540 68-618 100-741 (768)
3 1ziw_A TOLL-like receptor 3; i 1.0 1 1 530.4 44.9 575 67-644 24-626 (680)
4 1ziw_A TOLL-like receptor 3; i 1.0 1 1 523.3 45.2 546 69-621 50-626 (680)
5 3j0a_A TOLL-like receptor 5; m 1.0 1 1 497.4 38.3 523 55-623 13-566 (844)
6 3t6q_A CD180 antigen; protein- 1.0 1 1 493.9 37.6 541 49-622 3-565 (606)
7 4eco_A Uncharacterized protein 1.0 1 1 485.5 24.1 511 24-595 29-602 (636)
8 3t6q_A CD180 antigen; protein- 1.0 1 1 479.1 32.2 537 72-644 16-564 (606)
9 4ecn_A Leucine-rich repeat pro 1.0 1 1 478.1 28.0 521 22-618 266-865 (876)
10 3j0a_A TOLL-like receptor 5; m 1.0 1 1 477.4 41.4 536 71-645 7-565 (844)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=1.00 E-value=1 Score=723.52 Aligned_cols=624 Identities=30% Similarity=0.491 Sum_probs=481.0
Q ss_pred HHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCEEEEEECCCCCCCC---CCC--------
Q ss_conf 841599100999999997334599974446878999986432047379999389999079987544---763--------
Q 001838 18 AAASNITTDQQSLLALKAHISYDPTNLFAKNWTSSTSVCSWIGITCGVNSHKVIVLNISGFNLQGT---IPP-------- 86 (1007)
Q Consensus 18 ~~~~~~~~~~~~ll~~k~~~~~~~~~~~~~~w~~~~~~c~w~gv~c~~~~~~v~~L~L~~n~l~~~---~~~-------- 86 (1007)
+++.+.++|++||++||+++. ||. .++ +|..++|||+|+||+|+ +++|+.|||+++.+.|. +++
T Consensus 5 ~~~~~~~~~~~all~~k~~~~-~~~-~l~-~W~~~~~~C~w~gv~C~--~~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L 79 (768)
T 3rgz_A 5 SPSQSLYREIHQLISFKDVLP-DKN-LLP-DWSSNKNPCTFDGVTCR--DDKVTSIDLSSKPLNVGFSAVSSSLLSLTGL 79 (768)
T ss_dssp ---CCHHHHHHHHHHHHTTCS-CTT-SST-TCCTTSCGGGSTTEEEE--TTEEEEEECTTSCCCEEHHHHHHHTTTCTTC
T ss_pred CCCCCCHHHHHHHHHHHHHCC-CCC-CCC-CCCCCCCCCCCCCEEEC--CCCEEEEECCCCCCCCCCCCCCHHHHCCCCC
T ss_conf 656687899999999996678-962-146-87899987688413878--9927898778998677557669657316802
Q ss_pred ---------------CCCCCCCCCEEECCCCCCCCCCCC--CCCCCCCCCEEECCCCCCCCCCHHHH-HHCCCCCEECCC
Q ss_conf ---------------666999999997699979998895--43375667287466764578622446-404888701166
Q 001838 87 ---------------QLGNLSSLETLDLSHNKLSGNIPS--SIFNMHTLKLLDFRDNQLFGSLSSFI-FNMSSMLGIDLS 148 (1007)
Q Consensus 87 ---------------~l~~l~~L~~L~Ls~N~l~~~~p~--~~~~l~~L~~L~Ls~N~l~~~~~~~~-~~l~~L~~LdLs 148 (1007)
.++.+++|++|||++|.+.+.+|. .++++++|++|||++|.+.+..+..+ .++++|+.|||+
T Consensus 80 ~~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls 159 (768)
T 3rgz_A 80 ESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLS 159 (768)
T ss_dssp CEEECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECC
T ss_pred CCCCCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCCEEECC
T ss_conf 24678688867870332457889989898985787078967872788999898968826774797785638899989897
Q ss_pred CCCCCCCCCHHH--HHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCC
Q ss_conf 764589772568--512999868976685244569864568888958983134477989856556565655880268678
Q 001838 149 INRFSGELPANI--CKNLPNLKKLLLGRNMFHGKIPSTLSKCKQLEGLYLRFNNLSGAIPKEIGNLTKLKDIILNDNELR 226 (1007)
Q Consensus 149 ~N~~~~~~p~~~--~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 226 (1007)
+|++++..+... +.++++|++|++++|.+.+..|. ..+++|++|+|++|.+.+.+|. +.++++|++|++++|+++
T Consensus 160 ~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~--~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~ 236 (768)
T 3rgz_A 160 ANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDV--SRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLS 236 (768)
T ss_dssp SSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBC--TTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCC
T ss_pred CCCCCCCCCHHHHHHCCCCCCCEEECCCCCCCCCCCC--CCCCCCCEEECCCCCCCCCCCC-CCCCCCCCEEECCCCCCC
T ss_conf 9835885871556643589889898978803465784--5478689898928827887711-126999998979488587
Q ss_pred CCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCCCCC
Q ss_conf 98884457855444432147646544541112788888388126546676880000379987579625877887799444
Q 001838 227 GEIPQEMGNLPYLVRLTLATNNLVGVVPFTIFNMSTLKKLSLLENTLWGSLPSRIDLSLPNVEFLNLGTNRFSGNIPSSI 306 (1007)
Q Consensus 227 ~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~ 306 (1007)
+.+|..+..+++|+.|+++.|.+.+..|.. .+++|++|++++|.+.+.+|..+...+++|+.|++++|++++.+|..+
T Consensus 237 ~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~ 314 (768)
T 3rgz_A 237 GDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFF 314 (768)
T ss_dssp SCHHHHTTTCSSCCEEECCSSCCEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGG
T ss_pred CCCCHHHHCCCCCCEEECCCCCCCCCCCCC--CCCCCCEEECCCCCCCCCCCHHHHHHCCCCCEEECCCCCCCCCCCHHH
T ss_conf 816577744888898989888665716724--368789897917855772588888446868899896896778423677
Q ss_pred CCCCCCCEEEECCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCC-C-------------------CCCCC--CC
Q ss_conf 36689989992389767877754-44645533012325011268898421-2-------------------34566--65
Q 001838 307 TNASKLTVFQLRGNSFSGFIPNT-IGNLRNLEFLNIADNYLTSSTPELSF-L-------------------SSLTN--CQ 363 (1007)
Q Consensus 307 ~~~~~L~~L~Ls~N~l~~~~p~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~-~-------------------~~l~~--l~ 363 (1007)
..+++|+.|++++|.+.+.+|.. +..+++|++|++++|.+++..|.... . ..+.. ++
T Consensus 315 ~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~ 394 (768)
T 3rgz_A 315 GSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKN 394 (768)
T ss_dssp GGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTC
T ss_pred HCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCHHHHHHHCCCCEEECCCCCCCCCCCHHHHHCCCC
T ss_conf 55877667789788525737978872488887884847843762309898632277199862787478767666533247
Q ss_pred CCCEEECCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCHHHHCCCCCCEEECCCCEECCCCCHHHHHCCCCCCCCC
Q ss_conf 43099834777989787874532213242450144346668953421478758981298001334532220246683135
Q 001838 364 KIRVLILAGNPLDGILPSSIGNLSISLERFQMFNCRISGKIPQVISNLSNLLLLDLGGNKLTGSIPVTFSRLLNLQGLGL 443 (1007)
Q Consensus 364 ~L~~L~L~~N~l~~~~p~~~~~l~~~l~~L~l~~n~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~L 443 (1007)
.|+.|++++|.+.+.+|..+..++ +++.|++++|.+.+.+|..+..+++|+.|++++|.+.+.+|..+..+++|+.|++
T Consensus 395 ~L~~L~L~~n~l~~~~p~~l~~l~-~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 473 (768)
T 3rgz_A 395 TLQELYLQNNGFTGKIPPTLSNCS-ELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLIL 473 (768)
T ss_dssp CCCEEECCSSEEEEECCGGGGGCT-TCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEEC
T ss_pred CCCEEECCCCCCCCCCCHHHHCCC-CCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHCCCCCCEEEEE
T ss_conf 761898977846542487775689-8798989588466854677744998898989788154718978828777329990
Q ss_pred CCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 88735888862110366566421333445688888777766571520278655667882101343331203798976798
Q 001838 444 AFNKLARSIPDEICHLAKLDKLILHGNKFSGAIPSCSGNLTSLRALYLGSNRFTSALPSTIWNLKDILFFDVSSNSLDGP 523 (1007)
Q Consensus 444 s~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~Ldls~N~l~~~ 523 (1007)
++|++.+..|..+..+++|+.|++++|++++.+|..+..+++|+.|++++|++.+.+|..+..+++|+.||+++|.+.+.
T Consensus 474 ~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ 553 (768)
T 3rgz_A 474 DFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGT 553 (768)
T ss_dssp CSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESB
T ss_pred CCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCC
T ss_conf 19951375887881699899897539951896876885689999898978943374887770889899898988846882
Q ss_pred CCCC----------------------------------------------------------------------CCCCCC
Q ss_conf 8655----------------------------------------------------------------------466333
Q 001838 524 LSLD----------------------------------------------------------------------IGNLKV 533 (1007)
Q Consensus 524 ~~~~----------------------------------------------------------------------~~~l~~ 533 (1007)
+|.. ++.++.
T Consensus 554 ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~ 633 (768)
T 3rgz_A 554 IPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGS 633 (768)
T ss_dssp CCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBC
T ss_pred CCHHHHCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCEECCCCCHHHHCCCC
T ss_conf 79578604212232013454211113444322223322210013556323200232110011331004627433403356
Q ss_pred CCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCHHHHCCCCEEECCC
Q ss_conf 46584756437787520014888864895656656565684476999998887879846435994322205798344858
Q 001838 534 VIELNLSRNNLSGDIPITIGGLKNLQKLFLANNRLEGPIPESFSGLSSLEILDLSKNKISGVIPTSLEKLLYLKKLNLSF 613 (1007)
Q Consensus 534 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~ 613 (1007)
++.||+++|+++|.+|..++.+++|+.|+|++|+++|.+|..++.+++|+.|||++|+++|.+|..+..++.|+.||+++
T Consensus 634 L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~ 713 (768)
T 3rgz_A 634 MMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSN 713 (768)
T ss_dssp CCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCS
T ss_pred CCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCC
T ss_conf 65797858801555877884141578784868803887896784777899898978802386886775788789787968
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 954012599996777764433445535898888899888999
Q 001838 614 NKLEGEIPRGGPFANLTAKSFLGNELLCGLPDLHNSPCKLNK 655 (1007)
Q Consensus 614 N~l~~~~p~~~~~~~~~~~~~~~n~~lc~~p~~~~~~c~~~~ 655 (1007)
|+++|.+|.+++|.++...+|.||+.+||.|. .+|....
T Consensus 714 N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~l---~~C~~~~ 752 (768)
T 3rgz_A 714 NNLSGPIPEMGQFETFPPAKFLNNPGLCGYPL---PRCDPSN 752 (768)
T ss_dssp SEEEEECCSSSSGGGSCGGGGCSCTEEESTTS---CCCCSCC
T ss_pred CCCCCCCCCCHHHCCCCHHHHCCCCHHCCCCC---CCCCCCC
T ss_conf 81556089960102489777569832108877---6788876
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=1.00 E-value=1 Score=575.73 Aligned_cols=540 Identities=33% Similarity=0.479 Sum_probs=412.9
Q ss_pred CCEEEEEECCCCCCCCCCC--CCCCCCCCCEEECCCCCCCCCCCCCC-CCCCCCCEEECCCCCCCCCCHHH---HHHCCC
Q ss_conf 9389999079987544763--66699999999769997999889543-37566728746676457862244---640488
Q 001838 68 HKVIVLNISGFNLQGTIPP--QLGNLSSLETLDLSHNKLSGNIPSSI-FNMHTLKLLDFRDNQLFGSLSSF---IFNMSS 141 (1007)
Q Consensus 68 ~~v~~L~L~~n~l~~~~~~--~l~~l~~L~~L~Ls~N~l~~~~p~~~-~~l~~L~~L~Ls~N~l~~~~~~~---~~~l~~ 141 (1007)
.+++.|||++|.+.|.+|. .++.+++|++|||++|.+.+..|..+ ..+++|++|||++|.+.+..+.. +.++++
T Consensus 100 ~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~ 179 (768)
T 3rgz_A 100 ASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGE 179 (768)
T ss_dssp TTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTT
T ss_pred CCCCEEECCCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCCHHHHHHCCCCC
T ss_conf 88998989898578707896787278899989896882677479778563889998989798358858715566435898
Q ss_pred CCEECCCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEE--
Q ss_conf 870116676458977256851299986897668524456986456888895898313447798985655656565588--
Q 001838 142 MLGIDLSINRFSGELPANICKNLPNLKKLLLGRNMFHGKIPSTLSKCKQLEGLYLRFNNLSGAIPKEIGNLTKLKDII-- 219 (1007)
Q Consensus 142 L~~LdLs~N~~~~~~p~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~-- 219 (1007)
|+.|++++|.+.+..+. ..+++|++|++++|.+.+.+|. +..+++|++|++++|.+++..|..+.++++|++|+
T Consensus 180 L~~L~Ls~n~l~~~~~~---~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls 255 (768)
T 3rgz_A 180 LKHLAISGNKISGDVDV---SRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNIS 255 (768)
T ss_dssp CCEEECCSSEEESCCBC---TTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECC
T ss_pred CCEEECCCCCCCCCCCC---CCCCCCCEEECCCCCCCCCCCC-CCCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECC
T ss_conf 89898978803465784---5478689898928827887711-1269999989794885878165777448888989898
Q ss_pred --------------------CCCCCCCCCCCCCCCCC-CCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCC
Q ss_conf --------------------02686789888445785-544443214764654454111278888838812654667688
Q 001838 220 --------------------LNDNELRGEIPQEMGNL-PYLVRLTLATNNLVGVVPFTIFNMSTLKKLSLLENTLWGSLP 278 (1007)
Q Consensus 220 --------------------Ls~N~l~~~~p~~~~~l-~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~ 278 (1007)
+++|++++.+|..+... ++|+.|+++.|.+.+..|..+.++++|++|++++|.+.+.+|
T Consensus 256 ~n~l~~~~~~~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip 335 (768)
T 3rgz_A 256 SNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELP 335 (768)
T ss_dssp SSCCEESCCCCCCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECC
T ss_pred CCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHHCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCC
T ss_conf 88665716724368789897917855772588888446868899896896778423677558776677897885257379
Q ss_pred CHHHCCCCCCCEEECCCCCCCCCCCCCCCCCC-CCCEEEECCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 00003799875796258778877994443668-9989992389767877754446--45533012325011268898421
Q 001838 279 SRIDLSLPNVEFLNLGTNRFSGNIPSSITNAS-KLTVFQLRGNSFSGFIPNTIGN--LRNLEFLNIADNYLTSSTPELSF 355 (1007)
Q Consensus 279 ~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~-~L~~L~Ls~N~l~~~~p~~~~~--l~~L~~L~Ls~N~l~~~~~~~~~ 355 (1007)
...+..+++|+.|++++|++++.+|..+..++ +|+.|++++|.+.+..|..+.. +++|++|++++|.+++..|
T Consensus 336 ~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p---- 411 (768)
T 3rgz_A 336 MDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIP---- 411 (768)
T ss_dssp HHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECC----
T ss_pred HHHHHCCCCCCEEECCCCCCCCCCCHHHHHHHCCCCEEECCCCCCCCCCCHHHHHCCCCCCCEEECCCCCCCCCCC----
T ss_conf 7887248888788484784376230989863227719986278747876766653324776189897784654248----
Q ss_pred CCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCHHHHCCCCCCEEECCCCEECCCCCHHHHHC
Q ss_conf 23456665430998347779897878745322132424501443466689534214787589812980013345322202
Q 001838 356 LSSLTNCQKIRVLILAGNPLDGILPSSIGNLSISLERFQMFNCRISGKIPQVISNLSNLLLLDLGGNKLTGSIPVTFSRL 435 (1007)
Q Consensus 356 ~~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~~l~~L~l~~n~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l 435 (1007)
..+.++++|+.|++++|.+.+.+|..+..++ +++.|++.+|.+.+.+|..+..+++|+.|++++|++.+.+|..+..+
T Consensus 412 -~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~-~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l 489 (768)
T 3rgz_A 412 -PTLSNCSELVSLHLSFNYLSGTIPSSLGSLS-KLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNC 489 (768)
T ss_dssp -GGGGGCTTCCEEECCSSEEESCCCGGGGGCT-TCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGC
T ss_pred -HHHHCCCCCCEEECCCCCCCCCCCHHHHCCC-CCCEEECCCCCCCCCCCHHHCCCCCCEEEEECCCCCCCCCCHHHHCC
T ss_conf -7775689879898958846685467774499-88989897881547189788287773299901995137588788169
Q ss_pred CCCCCCCCCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCC----------
Q ss_conf 4668313588735888862110366566421333445688888777766571520278655667882101----------
Q 001838 436 LNLQGLGLAFNKLARSIPDEICHLAKLDKLILHGNKFSGAIPSCSGNLTSLRALYLGSNRFTSALPSTIW---------- 505 (1007)
Q Consensus 436 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~---------- 505 (1007)
++|++|++++|++.+.+|..+..+++|+.|++++|++++.+|..+..+++|+.|++++|.+.+.+|..++
T Consensus 490 ~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~ 569 (768)
T 3rgz_A 490 TNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANF 569 (768)
T ss_dssp TTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCST
T ss_pred CCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCCHHHHCCCCHHHHHC
T ss_conf 98998975399518968768856899998989789433748877708898998989888468827957860421223201
Q ss_pred ------------------------------------------------------------CCCCCCCCCCCCCCCCCCCC
Q ss_conf ------------------------------------------------------------34333120379897679886
Q 001838 506 ------------------------------------------------------------NLKDILFFDVSSNSLDGPLS 525 (1007)
Q Consensus 506 ------------------------------------------------------------~l~~L~~Ldls~N~l~~~~~ 525 (1007)
.+++|+.||+++|++++.+|
T Consensus 570 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip 649 (768)
T 3rgz_A 570 IAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIP 649 (768)
T ss_dssp TCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCC
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCEECCCCCHHHHCCCCCCEEECCCCCCCCCCC
T ss_conf 34542111134443222233222100135563232002321100113310046274334033566579785880155587
Q ss_pred CCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCHHHHCC
Q ss_conf 55466333465847564377875200148888648956566565656844769999988878798464359943222057
Q 001838 526 LDIGNLKVVIELNLSRNNLSGDIPITIGGLKNLQKLFLANNRLEGPIPESFSGLSSLEILDLSKNKISGVIPTSLEKLLY 605 (1007)
Q Consensus 526 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~ 605 (1007)
..++.++.|+.|+|++|.++|.+|..++.+++|+.|+|++|+++|.+|..+..+++|+.||+++|+++|.+|.. ..+..
T Consensus 650 ~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~-~~~~~ 728 (768)
T 3rgz_A 650 KEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM-GQFET 728 (768)
T ss_dssp GGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSS-SSGGG
T ss_pred HHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCCC-HHHCC
T ss_conf 78841415787848688038878967847778998989788023868867757887897879688155608996-01024
Q ss_pred CCEEECCCCCCCC
Q ss_conf 9834485895401
Q 001838 606 LKKLNLSFNKLEG 618 (1007)
Q Consensus 606 L~~L~ls~N~l~~ 618 (1007)
+....+.+|+.-|
T Consensus 729 ~~~~~~~gN~~Lc 741 (768)
T 3rgz_A 729 FPPAKFLNNPGLC 741 (768)
T ss_dssp SCGGGGCSCTEEE
T ss_pred CCHHHHCCCCHHC
T ss_conf 8977756983210
No 3
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=1.00 E-value=1 Score=530.37 Aligned_cols=575 Identities=23% Similarity=0.264 Sum_probs=379.1
Q ss_pred CCCEEEEEECCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCHHHHHHCCCCCEEC
Q ss_conf 99389999079987544763666999999997699979998895433756672874667645786224464048887011
Q 001838 67 SHKVIVLNISGFNLQGTIPPQLGNLSSLETLDLSHNKLSGNIPSSIFNMHTLKLLDFRDNQLFGSLSSFIFNMSSMLGID 146 (1007)
Q Consensus 67 ~~~v~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~Ld 146 (1007)
..+++.|+|++|.+++..+..|..+++|++|||++|.+.+..|..|.++++|++|+|++|.+.+.++..|.++++|+.|+
T Consensus 24 ~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~ 103 (680)
T 1ziw_A 24 PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELH 103 (680)
T ss_dssp CTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEE
T ss_pred CCCCCEEECCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEE
T ss_conf 88876888989977875978871787675887889964856977874066768888999856756854530388889898
Q ss_pred CCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCC--CCCCCCEEECCCCC
Q ss_conf 6676458977256851299986897668524456986456888895898313447798985655--65656558802686
Q 001838 147 LSINRFSGELPANICKNLPNLKKLLLGRNMFHGKIPSTLSKCKQLEGLYLRFNNLSGAIPKEIG--NLTKLKDIILNDNE 224 (1007)
Q Consensus 147 Ls~N~~~~~~p~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~--~l~~L~~L~Ls~N~ 224 (1007)
|++|++. .+++..+..+++|++|++++|.+++..|..|.++++|++|++++|.+++..+..+. .+++|+.|++++|+
T Consensus 104 L~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~ 182 (680)
T 1ziw_A 104 LMSNSIQ-KIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQ 182 (680)
T ss_dssp CCSSCCC-CCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCC
T ss_pred CCCCCCC-CCCHHHCCCCCCCCEEECCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCHHHHHCCCCCCCCEEECCCCC
T ss_conf 9899668-539667415678888989899524667211124556777974588436529788624466632179888982
Q ss_pred CCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCC---CCCCCCCEEECCCCCCCCCCCCHHHCCC--CCCCEEECCCCCCC
Q ss_conf 789888445785544443214764654454111---2788888388126546676880000379--98757962587788
Q 001838 225 LRGEIPQEMGNLPYLVRLTLATNNLVGVVPFTI---FNMSTLKKLSLLENTLWGSLPSRIDLSL--PNVEFLNLGTNRFS 299 (1007)
Q Consensus 225 l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~---~~l~~L~~L~L~~N~l~~~~~~~~~~~l--~~L~~L~Ls~N~l~ 299 (1007)
+++..|..|..+++|+.++++.+.+.......+ ...++|++|++++|.+.+..+..+. .+ ++|+.|++++|+++
T Consensus 183 l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~-~l~~~~L~~L~Ls~n~l~ 261 (680)
T 1ziw_A 183 IKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFL-GLKWTNLTMLDLSYNNLN 261 (680)
T ss_dssp CCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTG-GGGGSCCCEEECTTSCCC
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEECCCCCCCCCCHHHHH-CCCCCCCCEEECCCCCCC
T ss_conf 5655815553223445543056646805677787775315100887457743646866751-467677888778788767
Q ss_pred CCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC----CCCCCCCCCCCEEECCCCCC
Q ss_conf 77994443668998999238976787775444645533012325011268898421----23456665430998347779
Q 001838 300 GNIPSSITNASKLTVFQLRGNSFSGFIPNTIGNLRNLEFLNIADNYLTSSTPELSF----LSSLTNCQKIRVLILAGNPL 375 (1007)
Q Consensus 300 ~~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~----~~~l~~l~~L~~L~L~~N~l 375 (1007)
+..+..+..+++|+.|++++|.+.+..|..|..+.+|+.|++++|......+.... ...+..+++|+.|++++|.+
T Consensus 262 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l 341 (680)
T 1ziw_A 262 VVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDI 341 (680)
T ss_dssp EECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCB
T ss_pred CCCCCCCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCHHHHCCCCCCCCCCCCHHHCCCCCCCCEEECCCCCC
T ss_conf 56802116741056855778856765865626788855773633132133333554543865624677788887989826
Q ss_pred CCCCCCCCCCCCCCCCEEEECCCCCCCC--CCHHHHCC--CCCCEEECCCCEECCCCCHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 8978787453221324245014434666--89534214--7875898129800133453222024668313588735888
Q 001838 376 DGILPSSIGNLSISLERFQMFNCRISGK--IPQVISNL--SNLLLLDLGGNKLTGSIPVTFSRLLNLQGLGLAFNKLARS 451 (1007)
Q Consensus 376 ~~~~p~~~~~l~~~l~~L~l~~n~l~~~--~p~~~~~l--~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ 451 (1007)
.+..+..+..++ +++.+++++|.+... .+..|..+ ++|+.|++++|++.+..|..|..+++|+.|++++|.+.+.
T Consensus 342 ~~~~~~~~~~l~-~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 420 (680)
T 1ziw_A 342 PGIKSNMFTGLI-NLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQE 420 (680)
T ss_dssp CCCCTTTTTTCT-TCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEE
T ss_pred CCCCHHHHCCCC-CCCEEECCCCCHHHHHCCHHHHCCCCCCCCCEEECCCCCCCEECHHHHHCCCCCCEEECCCCCCCCC
T ss_conf 878855740656-8728988798014432353220245568676688999977767754420778888886778757543
Q ss_pred CC-HHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCC--CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 86-21103665664213334456888887777665715202786556--6788210134333120379897679886554
Q 001838 452 IP-DEICHLAKLDKLILHGNKFSGAIPSCSGNLTSLRALYLGSNRFT--SALPSTIWNLKDILFFDVSSNSLDGPLSLDI 528 (1007)
Q Consensus 452 ~~-~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~--~~~p~~~~~l~~L~~Ldls~N~l~~~~~~~~ 528 (1007)
++ ..|..+++|+.|++++|++.+..+..+..+++|+.|++++|.+. +..|..+..+++|+.|++++|++++..+..+
T Consensus 421 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~ 500 (680)
T 1ziw_A 421 LTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDML 500 (680)
T ss_dssp CCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTT
T ss_pred CCCCCCCCCCCCCEEECCCCCCCEECHHHHHCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCHHHH
T ss_conf 57553257546127844899754227645500754310110146442256677645557878999899998776794463
Q ss_pred CCCCCCCEEECCCCCCCCCCC--------CCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCH
Q ss_conf 663334658475643778752--------001488886489565665656568447699999888787984643599432
Q 001838 529 GNLKVVIELNLSRNNLSGDIP--------ITIGGLKNLQKLFLANNRLEGPIPESFSGLSSLEILDLSKNKISGVIPTSL 600 (1007)
Q Consensus 529 ~~l~~L~~L~Ls~N~l~~~~p--------~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~ 600 (1007)
..++.|++|++++|.+++..+ ..+.++++|+.|+|++|+++.+++..|.++++|+.|++++|++++..+..|
T Consensus 501 ~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~ 580 (680)
T 1ziw_A 501 EGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVF 580 (680)
T ss_dssp TTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT
T ss_pred CCCCCCCEEECCCCCCCCCCHHHCCCCCCHHHCCCCCCCEEECCCCCCCCCCHHHCCCCCCCCEEECCCCCCCCCCHHHH
T ss_conf 45534688858899730000000467741423379988888899997887797773466675223899997776797683
Q ss_pred HHHCCCCEEECCCCCCCCCCCCC-C-CCCCCCCCCCCCCCCCCCCC
Q ss_conf 22057983448589540125999-9-67777644334455358988
Q 001838 601 EKLLYLKKLNLSFNKLEGEIPRG-G-PFANLTAKSFLGNELLCGLP 644 (1007)
Q Consensus 601 ~~l~~L~~L~ls~N~l~~~~p~~-~-~~~~~~~~~~~~n~~lc~~p 644 (1007)
..++.|+.|++++|++++..|.. . .+.++....+.+|++.|+++
T Consensus 581 ~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~ 626 (680)
T 1ziw_A 581 NNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCE 626 (680)
T ss_dssp TTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCC
T ss_pred CCCCCCCEEECCCCCCCCCCHHHHCCCCCCCCEEECCCCCCCCCCC
T ss_conf 7898888898999968705966830114665779831897025776
No 4
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=1.00 E-value=1 Score=523.31 Aligned_cols=546 Identities=21% Similarity=0.232 Sum_probs=247.8
Q ss_pred CEEEEEECCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCHHHHHHCCCCCEECCC
Q ss_conf 38999907998754476366699999999769997999889543375667287466764578622446404888701166
Q 001838 69 KVIVLNISGFNLQGTIPPQLGNLSSLETLDLSHNKLSGNIPSSIFNMHTLKLLDFRDNQLFGSLSSFIFNMSSMLGIDLS 148 (1007)
Q Consensus 69 ~v~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~LdLs 148 (1007)
+++.|+|++|.+.+..+..|..+++|++|+|++|.+..+.+.+|.++++|++|+|++|.+.+.++..|.++++|+.|||+
T Consensus 50 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 129 (680)
T 1ziw_A 50 QLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLS 129 (680)
T ss_dssp TCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECC
T ss_pred CCCEEECCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHCCCCCCCCEEECC
T ss_conf 67588788996485697787406676888899985675685453038888989898996685396674156788889898
Q ss_pred CCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCCCCC--CCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCC
Q ss_conf 76458977256851299986897668524456986456--8888958983134477989856556565655880268678
Q 001838 149 INRFSGELPANICKNLPNLKKLLLGRNMFHGKIPSTLS--KCKQLEGLYLRFNNLSGAIPKEIGNLTKLKDIILNDNELR 226 (1007)
Q Consensus 149 ~N~~~~~~p~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~--~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 226 (1007)
+|.+.+..+.. +..+++|++|++++|.+++..+..+. .+++|+.|++++|.+++..|..|..+.+|+.+++++|.+.
T Consensus 130 ~n~l~~~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~ 208 (680)
T 1ziw_A 130 HNGLSSTKLGT-QVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLG 208 (680)
T ss_dssp SSCCSCCCCCS-SSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCH
T ss_pred CCCCCCCCCHH-HCCCCCCCEEECCCCCCCCCCHHHHHCCCCCCCCEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCCC
T ss_conf 99524667211-12455677797458843652978862446663217988898256558155532234455430566468
Q ss_pred CCCCCCCC---CCCCCCEEECCCCCCCCCCCCCCCCCCC--CCEEECCCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCC
Q ss_conf 98884457---8554444321476465445411127888--883881265466768800003799875796258778877
Q 001838 227 GEIPQEMG---NLPYLVRLTLATNNLVGVVPFTIFNMST--LKKLSLLENTLWGSLPSRIDLSLPNVEFLNLGTNRFSGN 301 (1007)
Q Consensus 227 ~~~p~~~~---~l~~L~~L~Ls~N~l~~~~p~~~~~l~~--L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 301 (1007)
......+. ..++|+.|++++|.+.+..|..|.++.. |++|++++|.+.+..+. .+..+++|+.|++++|++++.
T Consensus 209 ~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~ 287 (680)
T 1ziw_A 209 PSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGND-SFAWLPQLEYFFLEYNNIQHL 287 (680)
T ss_dssp HHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTT-TTTTCTTCCEEECCSCCBSEE
T ss_pred HHHHHHHHHHHHHCCCCEEECCCCCCCCCCHHHHHCCCCCCCCEEECCCCCCCCCCCC-CCCCCCCCCEEECCCCCCCCC
T ss_conf 0567778777531510088745774364686675146767788877878876756802-116741056855778856765
Q ss_pred CCCCCCCCCCCCEEEECCCCCCC-----CCC----CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCC
Q ss_conf 99444366899899923897678-----777----544464553301232501126889842123456665430998347
Q 001838 302 IPSSITNASKLTVFQLRGNSFSG-----FIP----NTIGNLRNLEFLNIADNYLTSSTPELSFLSSLTNCQKIRVLILAG 372 (1007)
Q Consensus 302 ~p~~~~~~~~L~~L~Ls~N~l~~-----~~p----~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~l~~L~~L~L~~ 372 (1007)
.|..+..+++|+.|++++|...+ .+| ..|..+++|+.|++++|.+.+..+. .+.++++|+.|++++
T Consensus 288 ~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~-----~~~~l~~L~~L~Ls~ 362 (680)
T 1ziw_A 288 FSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSN-----MFTGLINLKYLSLSN 362 (680)
T ss_dssp CTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTT-----TTTTCTTCCEEECTT
T ss_pred CHHHHCCCCCCCEEECCCHHHHCCCCCCCCCCCCHHHCCCCCCCCEEECCCCCCCCCCHH-----HHCCCCCCCEEECCC
T ss_conf 865626788855773633132133333554543865624677788887989826878855-----740656872898879
Q ss_pred CCCCCC--CCCCCCCCC-CCCCEEEECCCCCCCCCCHHHHCCCCCCEEECCCCEECCCCC-HHHHHCCCCCCCCCCCCCC
Q ss_conf 779897--878745322-132424501443466689534214787589812980013345-3222024668313588735
Q 001838 373 NPLDGI--LPSSIGNLS-ISLERFQMFNCRISGKIPQVISNLSNLLLLDLGGNKLTGSIP-VTFSRLLNLQGLGLAFNKL 448 (1007)
Q Consensus 373 N~l~~~--~p~~~~~l~-~~l~~L~l~~n~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p-~~~~~l~~L~~L~Ls~N~l 448 (1007)
|.+... .+..+..+. ..++.+++++|++.+..|..|..+++|+.|++++|.+.+.+| ..|..+++|++|++++|++
T Consensus 363 n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l 442 (680)
T 1ziw_A 363 SFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKY 442 (680)
T ss_dssp CBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSE
T ss_pred CCHHHHHCCHHHHCCCCCCCCCEEECCCCCCCEECHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCC
T ss_conf 80144323532202455686766889999777677544207788888867787575435755325754612784489975
Q ss_pred CCCCCHHHHCCCCCCEEECCCCCCC--CCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-
Q ss_conf 8888621103665664213334456--8888877776657152027865566788210134333120379897679886-
Q 001838 449 ARSIPDEICHLAKLDKLILHGNKFS--GAIPSCSGNLTSLRALYLGSNRFTSALPSTIWNLKDILFFDVSSNSLDGPLS- 525 (1007)
Q Consensus 449 ~~~~~~~~~~l~~L~~L~Ls~N~l~--~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~Ldls~N~l~~~~~- 525 (1007)
.+..+..|..+++|+.|++++|.+. +..|..+.++++|+.|++++|.+++..+..+..+++|+.|++++|++++..+
T Consensus 443 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 522 (680)
T 1ziw_A 443 LQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKH 522 (680)
T ss_dssp EECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGST
T ss_pred CEECHHHHHCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHH
T ss_conf 42276455007543101101464422566776455578789998999987767944634553468885889973000000
Q ss_pred -------CCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCC
Q ss_conf -------5546633346584756437787520014888864895656656565684476999998887879846435994
Q 001838 526 -------LDIGNLKVVIELNLSRNNLSGDIPITIGGLKNLQKLFLANNRLEGPIPESFSGLSSLEILDLSKNKISGVIPT 598 (1007)
Q Consensus 526 -------~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~ 598 (1007)
..+..++.|+.|++++|.++...+..|.++++|+.|+|++|+++++++..|..+++|+.|++++|++++..|.
T Consensus 523 ~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~ 602 (680)
T 1ziw_A 523 ANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKK 602 (680)
T ss_dssp TSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHH
T ss_pred HCCCCCCHHHCCCCCCCEEECCCCCCCCCCHHHCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHH
T ss_conf 04677414233799888888999978877977734666752238999977767976837898888898999968705966
Q ss_pred CHH-HHCCCCEEECCCCCCCCCCC
Q ss_conf 322-20579834485895401259
Q 001838 599 SLE-KLLYLKKLNLSFNKLEGEIP 621 (1007)
Q Consensus 599 ~~~-~l~~L~~L~ls~N~l~~~~p 621 (1007)
.+. .+++|+.+++++|++.|.|+
T Consensus 603 ~~~~~~~~L~~l~l~~N~~~c~c~ 626 (680)
T 1ziw_A 603 VFGPAFRNLTELDMRFNPFDCTCE 626 (680)
T ss_dssp HHHHHHTTCSEEECTTCCCCBCCC
T ss_pred HHCCCCCCCCEEECCCCCCCCCCC
T ss_conf 830114665779831897025776
No 5
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=1.00 E-value=1 Score=497.39 Aligned_cols=523 Identities=20% Similarity=0.187 Sum_probs=370.9
Q ss_pred CCCCCCEEECCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCC-CCCCCCCCCCCEEECCCCCCCCCCH
Q ss_conf 864320473799993899990799875447636669999999976999799988-9543375667287466764578622
Q 001838 55 VCSWIGITCGVNSHKVIVLNISGFNLQGTIPPQLGNLSSLETLDLSHNKLSGNI-PSSIFNMHTLKLLDFRDNQLFGSLS 133 (1007)
Q Consensus 55 ~c~w~gv~c~~~~~~v~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~-p~~~~~l~~L~~L~Ls~N~l~~~~~ 133 (1007)
.|+|..|-+ ...+++.|||++|.|++..+.+|..+++|++|||++|.+.+.+ |.+|.++++|++|+|++|.+.+..+
T Consensus 13 ~~~L~~vP~--lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p 90 (844)
T 3j0a_A 13 FCNLTQVPQ--VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHP 90 (844)
T ss_dssp CCCSSCCCS--SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECT
T ss_pred CCCCCCCCC--CCCCCCEEECCCCCCCCCCHHHCCCCCCCEEEECCCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCH
T ss_conf 799777898--999868888877867832966776621370886789977444197785378778888798995853197
Q ss_pred HHHHHCCCCCEECCCCCCCCCCCCHH-HHHCCCCCCEEECCCCCCCCCCC-CCCCCCCCCCEEECCCCCCCCCCCCCCCC
Q ss_conf 44640488870116676458977256-85129998689766852445698-64568888958983134477989856556
Q 001838 134 SFIFNMSSMLGIDLSINRFSGELPAN-ICKNLPNLKKLLLGRNMFHGKIP-STLSKCKQLEGLYLRFNNLSGAIPKEIGN 211 (1007)
Q Consensus 134 ~~~~~l~~L~~LdLs~N~~~~~~p~~-~~~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~L~~N~l~~~~p~~~~~ 211 (1007)
.+|..+++|+.|+|++|.+.+.++.. .+..+++|++|+|++|.+++..+ ..|.++++|+.|+|++|.+++..+..+..
T Consensus 91 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~ 170 (844)
T 3j0a_A 91 DAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEP 170 (844)
T ss_dssp TSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHH
T ss_pred HHCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCHHHHHCCCCCEEECCCCCCCEECHHHCCC
T ss_conf 67157866587017678897340467645566799988898786423256655763889898989898477667887535
Q ss_pred C--CCCCEEECCCCCCCCCCCCCCCCCCC------CCEEECCCCCCCCCCCCCCCCC---CCCCEEECCCCCCCCCC---
Q ss_conf 5--65655880268678988844578554------4443214764654454111278---88883881265466768---
Q 001838 212 L--TKLKDIILNDNELRGEIPQEMGNLPY------LVRLTLATNNLVGVVPFTIFNM---STLKKLSLLENTLWGSL--- 277 (1007)
Q Consensus 212 l--~~L~~L~Ls~N~l~~~~p~~~~~l~~------L~~L~Ls~N~l~~~~p~~~~~l---~~L~~L~L~~N~l~~~~--- 277 (1007)
+ ++|+.|+++.|.+.+..|..++.+++ |+.|+++.|.+.+..+..+... ..+..+.+..+......
T Consensus 171 l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~ 250 (844)
T 3j0a_A 171 LQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFH 250 (844)
T ss_dssp HHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCS
T ss_pred CCCCCCCEEECCCCCCCCCCCCCHHHCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHCCCCCCCCEECCCCCCCCCCCCC
T ss_conf 56775035789788666554553322377223574007965788686567788876427441001121212234664445
Q ss_pred -----CCHHHCC--CCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf -----8000037--998757962587788779944436689989992389767877754446455330123250112688
Q 001838 278 -----PSRIDLS--LPNVEFLNLGTNRFSGNIPSSITNASKLTVFQLRGNSFSGFIPNTIGNLRNLEFLNIADNYLTSST 350 (1007)
Q Consensus 278 -----~~~~~~~--l~~L~~L~Ls~N~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~ 350 (1007)
....+.. .++++.|++++|.+.+..+..+..+++|+.|++++|.+.+..|.+|..+++|+.|++++|.+....
T Consensus 251 ~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 330 (844)
T 3j0a_A 251 NIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELY 330 (844)
T ss_dssp SSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCC
T ss_pred CCCCCCHHHHHCCCCCCCCEEECCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCC
T ss_conf 66889855652555478618989799455158634525899999989798189879688368889998989899788518
Q ss_pred CCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCHHHHCCCCCCEEECCCCEECCCCCH
Q ss_conf 98421234566654309983477798978787453221324245014434666895342147875898129800133453
Q 001838 351 PELSFLSSLTNCQKIRVLILAGNPLDGILPSSIGNLSISLERFQMFNCRISGKIPQVISNLSNLLLLDLGGNKLTGSIPV 430 (1007)
Q Consensus 351 ~~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~~l~~L~l~~n~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~ 430 (1007)
+. .+.++++|+.|++++|.+.+..+.. |..+++|+.|++++|.+++..
T Consensus 331 ~~-----~~~~l~~L~~L~L~~N~i~~~~~~~-------------------------~~~l~~L~~L~Ls~N~l~~i~-- 378 (844)
T 3j0a_A 331 SS-----NFYGLPKVAYIDLQKNHIAIIQDQT-------------------------FKFLEKLQTLDLRDNALTTIH-- 378 (844)
T ss_dssp SC-----SCSSCTTCCEEECCSCCCCCCCSSC-------------------------SCSCCCCCEEEEETCCSCCCS--
T ss_pred HH-----HHCCCCCCCEEECCCCCCCCCCHHH-------------------------HCCCCCCCEEECCCCCCCCCC--
T ss_conf 78-----8468999998989899877628666-------------------------137888999889899778616--
Q ss_pred HHHHCCCCCCCCCCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCC-CCCCCCCCCCEEECCCCCCCCCCCC-CCCCCC
Q ss_conf 22202466831358873588886211036656642133344568888-8777766571520278655667882-101343
Q 001838 431 TFSRLLNLQGLGLAFNKLARSIPDEICHLAKLDKLILHGNKFSGAIP-SCSGNLTSLRALYLGSNRFTSALPS-TIWNLK 508 (1007)
Q Consensus 431 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~p~-~~~~l~ 508 (1007)
.+++|+.|++++|++... |.. ..+++.|++++|++++... ..+..+++|+.|++++|++++..+. .+..++
T Consensus 379 ---~~~~L~~L~l~~N~l~~l-~~~---~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~ 451 (844)
T 3j0a_A 379 ---FIPSIPDIFLSGNKLVTL-PKI---NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENP 451 (844)
T ss_dssp ---SCCSCSEEEEESCCCCCC-CCC---CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCT
T ss_pred ---CCCCCCHHCCCCCCCCCC-CCC---CCCCCEEECCCCCCCCCCHHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCC
T ss_conf ---889823200589972314-554---5543122145675345755666512776666667787125555433356687
Q ss_pred CCCCCCCCCCCCC-----CCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCC
Q ss_conf 3312037989767-----98865546633346584756437787520014888864895656656565684476999998
Q 001838 509 DILFFDVSSNSLD-----GPLSLDIGNLKVVIELNLSRNNLSGDIPITIGGLKNLQKLFLANNRLEGPIPESFSGLSSLE 583 (1007)
Q Consensus 509 ~L~~Ldls~N~l~-----~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~ 583 (1007)
+|+.|++++|.+. +..+..+..++.|+.|+|++|.+++..|..|..+++|+.|+|++|+++++++..+. ++|+
T Consensus 452 ~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~ 529 (844)
T 3j0a_A 452 SLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLE 529 (844)
T ss_dssp TCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCC
T ss_pred CCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHCCCHHHHHEEECCCCCCCCCCHHHHH--CCCC
T ss_conf 31002477773644101355355544755365777889856553955704501221569999978745710110--0455
Q ss_pred EEECCCCCCCCCCCCCHHHHCCCCEEECCCCCCCCCCCCC
Q ss_conf 8878798464359943222057983448589540125999
Q 001838 584 ILDLSKNKISGVIPTSLEKLLYLKKLNLSFNKLEGEIPRG 623 (1007)
Q Consensus 584 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~ 623 (1007)
.||+++|++++.+|..|. .|+.+++++|++.|.|+..
T Consensus 530 ~L~Ls~N~l~~~~~~~~~---~L~~l~l~~Np~~C~c~~~ 566 (844)
T 3j0a_A 530 ILDISRNQLLAPNPDVFV---SLSVLDITHNKFICECELS 566 (844)
T ss_dssp EEEEEEECCCCCCSCCCS---SCCEEEEEEECCCCSSSCC
T ss_pred EEECCCCCCCCCCHHHHC---CCCEEEECCCCCCCCCCCH
T ss_conf 888988847888966837---7688993199702536618
No 6
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=1.00 E-value=1 Score=493.95 Aligned_cols=541 Identities=19% Similarity=0.181 Sum_probs=342.4
Q ss_pred CCCCCCCCC--CCCEEECCC---------CCCEEEEEECCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCC
Q ss_conf 789999864--320473799---------993899990799875447636669999999976999799988954337566
Q 001838 49 WTSSTSVCS--WIGITCGVN---------SHKVIVLNISGFNLQGTIPPQLGNLSSLETLDLSHNKLSGNIPSSIFNMHT 117 (1007)
Q Consensus 49 w~~~~~~c~--w~gv~c~~~---------~~~v~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~ 117 (1007)
|....+.|. +..|.|... ...++.|+|++|.+++..+..|.++++|++|+|++|.+.++.|.+|.++++
T Consensus 3 ~~~~~C~~~~~~~~~~c~~~~l~~iP~~l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~ 82 (606)
T 3t6q_A 3 SSDQKCIEKEVNKTYNCENLGLNEIPGTLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHR 82 (606)
T ss_dssp ---CCCEEEETTTEEECTTSCCSSCCTTSCTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTT
T ss_pred CCCCCEECCCCCCEEECCCCCCCCCCCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCEEEECCCCCCCEECHHHCCCCCC
T ss_conf 45686012368723777779806286778986758981587347179667256766528978898355248511368433
Q ss_pred CCEEECCCCCCCCCCHHHHHHCCCCCEECCCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECC
Q ss_conf 72874667645786224464048887011667645897725685129998689766852445698645688889589831
Q 001838 118 LKLLDFRDNQLFGSLSSFIFNMSSMLGIDLSINRFSGELPANICKNLPNLKKLLLGRNMFHGKIPSTLSKCKQLEGLYLR 197 (1007)
Q Consensus 118 L~~L~Ls~N~l~~~~~~~~~~l~~L~~LdLs~N~~~~~~p~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~ 197 (1007)
|++|+|++|.+.+..+..|.++++|+.|++++|.+.+ +++..+.++++|++|++++|++.+.....+..+++|+.|+++
T Consensus 83 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~-l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 161 (606)
T 3t6q_A 83 LDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISS-IDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQ 161 (606)
T ss_dssp CCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSC-GGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECC
T ss_pred CCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCC-CCCCHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECC
T ss_conf 6764488985654586552344215376521267665-781012237822389887983411476545687656877765
Q ss_pred CCCCCCCCCCCCCCCCCCC--EEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCC
Q ss_conf 3447798985655656565--58802686789888445785544443214764654454111278888838812654667
Q 001838 198 FNNLSGAIPKEIGNLTKLK--DIILNDNELRGEIPQEMGNLPYLVRLTLATNNLVGVVPFTIFNMSTLKKLSLLENTLWG 275 (1007)
Q Consensus 198 ~N~l~~~~p~~~~~l~~L~--~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~ 275 (1007)
+|.+++..+..|..+++|+ .|++++|.+.+..|..|.. ..|+.|+++.|.. .+..+.++..+....+..+.+.
T Consensus 162 ~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~-~~L~~L~l~~~~~---~~~~~~~l~~~~l~~l~~~~~~- 236 (606)
T 3t6q_A 162 NNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDS-AVFQSLNFGGTQN---LLVIFKGLKNSTIQSLWLGTFE- 236 (606)
T ss_dssp SSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTT-CEEEEEECTTCSC---HHHHHHHTTTCEEEEEECCCCT-
T ss_pred CCCCCCCCHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHH-CCCCCCCCCCCHH---HHHHHHHCCCCCHHHEECHHHC-
T ss_conf 6844554965633221564038966798147548667300-1001355677266---7777651335644220020110-
Q ss_pred CCCCHHHCCCCCCCEEECCCCCCCCCCCCCCCCCC--CCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 68800003799875796258778877994443668--9989992389767877754446455330123250112688984
Q 001838 276 SLPSRIDLSLPNVEFLNLGTNRFSGNIPSSITNAS--KLTVFQLRGNSFSGFIPNTIGNLRNLEFLNIADNYLTSSTPEL 353 (1007)
Q Consensus 276 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~--~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~ 353 (1007)
........+..+..+. +++.+++++|.+.++.+..|..+++|++|++++|.++.+++
T Consensus 237 -------------------~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~-- 295 (606)
T 3t6q_A 237 -------------------DMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPS-- 295 (606)
T ss_dssp -------------------TSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCSCCCS--
T ss_pred -------------------CCCCCCCCHHHHCHHHCCCEEEEEEECCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCH--
T ss_conf -------------------26412268667430320750599944576585577774456678889562882677782--
Q ss_pred CCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCH-HHHCCCCCCEEECCCCEECCCC--CH
Q ss_conf 21234566654309983477798978787453221324245014434666895-3421478758981298001334--53
Q 001838 354 SFLSSLTNCQKIRVLILAGNPLDGILPSSIGNLSISLERFQMFNCRISGKIPQ-VISNLSNLLLLDLGGNKLTGSI--PV 430 (1007)
Q Consensus 354 ~~~~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~~l~~L~l~~n~l~~~~p~-~~~~l~~L~~LdLs~N~l~~~~--p~ 430 (1007)
.+.++++|+.|++++|.+.+..|..+..++ +++.+++++|.+.+.+|. .+..+++|++|++++|.+.+.. +.
T Consensus 296 ----~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 370 (606)
T 3t6q_A 296 ----GLVGLSTLKKLVLSANKFENLCQISASNFP-SLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNL 370 (606)
T ss_dssp ----SCCSCTTCCEEECTTCCCSBGGGGCGGGCT-TCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTT
T ss_pred ----HHCCCCCCCEEECCCCCCCCCCHHHHHCCC-CCCEEECCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCCCH
T ss_conf ----141654688897716876867602330157-689888989974443462455066758988788996664567522
Q ss_pred HHHHCCCCCCCCCCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCC-CCCCCCCCCEEECCCCCCCCCCCCCCCCCCC
Q ss_conf 222024668313588735888862110366566421333445688888-7777665715202786556678821013433
Q 001838 431 TFSRLLNLQGLGLAFNKLARSIPDEICHLAKLDKLILHGNKFSGAIPS-CSGNLTSLRALYLGSNRFTSALPSTIWNLKD 509 (1007)
Q Consensus 431 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~-~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~ 509 (1007)
.+..+++|+.|++++|.+.+..+..|..+++|+.|++++|++.+..+. .+..+++|+.|++++|.+....|..+..+++
T Consensus 371 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 450 (606)
T 3t6q_A 371 QLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPA 450 (606)
T ss_dssp TTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTT
T ss_pred HCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCHHHHHCCCC
T ss_conf 10567888989898996775788873477457768788886777565212417655888989898557768778737887
Q ss_pred CCCCCCCCCCCCC---CCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEE
Q ss_conf 3120379897679---8865546633346584756437787520014888864895656656565684476999998887
Q 001838 510 ILFFDVSSNSLDG---PLSLDIGNLKVVIELNLSRNNLSGDIPITIGGLKNLQKLFLANNRLEGPIPESFSGLSSLEILD 586 (1007)
Q Consensus 510 L~~Ldls~N~l~~---~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 586 (1007)
|+.|++++|.+.+ ..+..+..++.|+.|++++|.+++..|..+..+++|+.|+|++|++++.+|..+..++.| .|+
T Consensus 451 L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~ 529 (606)
T 3t6q_A 451 LQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLN 529 (606)
T ss_dssp CCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEE
T ss_pred CCEEECCCCCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHHCCCCCC-EEE
T ss_conf 8889898998885434543124048876688799996670686463265678889898980686896684756651-898
Q ss_pred CCCCCCCCCCCCCHHHHCCCCEEECCCCCCCCCCCC
Q ss_conf 879846435994322205798344858954012599
Q 001838 587 LSKNKISGVIPTSLEKLLYLKKLNLSFNKLEGEIPR 622 (1007)
Q Consensus 587 Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~ 622 (1007)
+++|++++.+|..+..+++|+.+++++|++.|.++.
T Consensus 530 L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~ 565 (606)
T 3t6q_A 530 LASNHISIILPSLLPILSQQRTINLRQNPLDCTCSN 565 (606)
T ss_dssp CCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGGG
T ss_pred CCCCCCCCCCHHHCCCCCCCCEEECCCCCCCCCCCC
T ss_conf 768941426876625677878896779986166775
No 7
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=1.00 E-value=1 Score=485.54 Aligned_cols=511 Identities=18% Similarity=0.244 Sum_probs=273.8
Q ss_pred CCHHHHHHHHHHHCCCCCCC-------CCCCCCCCCCCCCCC---CCEEECCCCCCEEEEEECCCCCCCCCCCCCCCCCC
Q ss_conf 10099999999733459997-------444687899998643---20473799993899990799875447636669999
Q 001838 24 TTDQQSLLALKAHISYDPTN-------LFAKNWTSSTSVCSW---IGITCGVNSHKVIVLNISGFNLQGTIPPQLGNLSS 93 (1007)
Q Consensus 24 ~~~~~~ll~~k~~~~~~~~~-------~~~~~w~~~~~~c~w---~gv~c~~~~~~v~~L~L~~n~l~~~~~~~l~~l~~ 93 (1007)
..|+.||.+++.++..+... ... +|+.+++||.| .||+|+.. ++|+.|+|+++++.|.+|++++.|++
T Consensus 29 ~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~-~W~~~~~~c~w~~~~GV~C~~~-~~V~~L~L~~~~l~g~lp~~l~~L~~ 106 (636)
T 4eco_A 29 IKDYLALKEIWDALNGKNWSQQGFGTQPGA-NWNFNKELDMWGAQPGVSLNSN-GRVTGLSLEGFGASGRVPDAIGQLTE 106 (636)
T ss_dssp HHHHHHHHHHHHHTTGGGCCCCC------C-CCCCSSCGGGTTCCTTEEECTT-CCEEEEECTTSCCEEEECGGGGGCTT
T ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCEEECCC-CCEEEEEECCCCCCCCCCHHHHCCCC
T ss_conf 788999999999758997454776776578-8777998000147798487678-97889984276657728857856845
Q ss_pred CCEEECCCCCCC------C------CCCCCCCCCCCCCEEECCCCCCCCCCHHHHHH-CCCCCEECCCCCCCCCCCCHHH
Q ss_conf 999976999799------9------88954337566728746676457862244640-4888701166764589772568
Q 001838 94 LETLDLSHNKLS------G------NIPSSIFNMHTLKLLDFRDNQLFGSLSSFIFN-MSSMLGIDLSINRFSGELPANI 160 (1007)
Q Consensus 94 L~~L~Ls~N~l~------~------~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~-l~~L~~LdLs~N~~~~~~p~~~ 160 (1007)
|++|||++|.+. + .+|... +..|+ +++++|.+.+.++..+.. +..+..+++....+..
T Consensus 107 L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~--~~~l~-l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~------ 177 (636)
T 4eco_A 107 LEVLALGSHGEKVNERLFGPKGISANMSDEQ--KQKMR-MHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKK------ 177 (636)
T ss_dssp CCEEESCCGGGGGTCCSBSTTSBCTTCCHHH--HHHHH-THHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCC------
T ss_pred CEEEECCCCCCCCCCCCCCCCCCCCCCHHHH--HHHHH-HHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCC------
T ss_conf 1189876885123774334532356733888--88887-65777554117066677887777642755465410------
Q ss_pred HHCCCCCCEEECC--CCCCCCCCCCCCCCCCCCCEEECCCCCCCCC-----------------CCCCCC--CCCCCCEEE
Q ss_conf 5129998689766--8524456986456888895898313447798-----------------985655--656565588
Q 001838 161 CKNLPNLKKLLLG--RNMFHGKIPSTLSKCKQLEGLYLRFNNLSGA-----------------IPKEIG--NLTKLKDII 219 (1007)
Q Consensus 161 ~~~l~~L~~L~Ls--~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~-----------------~p~~~~--~l~~L~~L~ 219 (1007)
.....++.+.++ .|++++ +|..|+++++|++|+|++|.+++. +|..++ ++++|++|+
T Consensus 178 -~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~ 255 (636)
T 4eco_A 178 -SSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVE 255 (636)
T ss_dssp -CCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEE
T ss_pred -CCCCCHHHHHHCCCCCCCCC-CCHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCHHCCCCCHHHHHCCCCCCCEEE
T ss_conf -13344213001013677750-7877725647878988688236642322122222100102486322004468788898
Q ss_pred CCCCCCCCCCCCCCCCCCCCCEEECCCCC-CCC-CCCCCCCCC------CCCCEEECCCCCCCCCCCC-HHHCCCCCCCE
Q ss_conf 02686789888445785544443214764-654-454111278------8888388126546676880-00037998757
Q 001838 220 LNDNELRGEIPQEMGNLPYLVRLTLATNN-LVG-VVPFTIFNM------STLKKLSLLENTLWGSLPS-RIDLSLPNVEF 290 (1007)
Q Consensus 220 Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~-l~~-~~p~~~~~l------~~L~~L~L~~N~l~~~~~~-~~~~~l~~L~~ 290 (1007)
+++|++.+.+|..|+++++|+.|++++|. +++ ..|..+..+ ++|++|++++|.+. .+|. ..+..+++|+.
T Consensus 256 L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~ 334 (636)
T 4eco_A 256 VYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGM 334 (636)
T ss_dssp EECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCE
T ss_pred ECCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCCHHHHHHHHCCCCCCCCCEEECCCCCCC-CCCCHHHHCCCCCCCE
T ss_conf 048857762838883499978897847988766533578875430465788888989799377-6676555425788898
Q ss_pred EECCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEE
Q ss_conf 962587788779944436689989992389767877754446455-3301232501126889842123456665430998
Q 001838 291 LNLGTNRFSGNIPSSITNASKLTVFQLRGNSFSGFIPNTIGNLRN-LEFLNIADNYLTSSTPELSFLSSLTNCQKIRVLI 369 (1007)
Q Consensus 291 L~Ls~N~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~-L~~L~Ls~N~l~~~~~~~~~~~~l~~l~~L~~L~ 369 (1007)
|++++|+++|.+| .+..+++|+.|++++|.+. .+|..+..+.+ |+.|++++|.++.++... ....+++|+.|+
T Consensus 335 L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~----~~~~l~~L~~L~ 408 (636)
T 4eco_A 335 LECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLKYIPNIF----DAKSVSVMSAID 408 (636)
T ss_dssp EECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCSSCCSCC----CTTCSSCEEEEE
T ss_pred EECCCCCCCCCHH-HHCCCCCCCEEECCCCCCC-CCCHHHHHHCCCCCEEECCCCCCCCCCHHH----HHCCCCCCCEEE
T ss_conf 9690880705166-6478898898989899403-033756510236868985298275446655----333457668897
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCHHHHCCCCCCEEECCCCEECCCCCHHHHHCCCCCCCCCCCCCCC
Q ss_conf 34777989787874532213242450144346668953421478758981298001334532220246683135887358
Q 001838 370 LAGNPLDGILPSSIGNLSISLERFQMFNCRISGKIPQVISNLSNLLLLDLGGNKLTGSIPVTFSRLLNLQGLGLAFNKLA 449 (1007)
Q Consensus 370 L~~N~l~~~~p~~~~~l~~~l~~L~l~~n~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 449 (1007)
+++|.+.+..|..+.... .....+.+|+.|++++|++....+..+..+++|+.|++++|.+.
T Consensus 409 Ls~N~l~~~~p~~l~~~~------------------~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~ 470 (636)
T 4eco_A 409 FSYNEIGSVDGKNFDPLD------------------PTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT 470 (636)
T ss_dssp CCSSCTTTTTTCSSCTTC------------------SSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS
T ss_pred CCCCCCCCCCHHHHCCCC------------------CCCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCC
T ss_conf 748857886524420022------------------01125898888977279668678788715898898989799788
Q ss_pred CCCCHHHHCC-------CCCCEEECCCCCCCCCCCCCCC--CCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 8886211036-------6566421333445688888777--766571520278655667882101343331203798976
Q 001838 450 RSIPDEICHL-------AKLDKLILHGNKFSGAIPSCSG--NLTSLRALYLGSNRFTSALPSTIWNLKDILFFDVSSNSL 520 (1007)
Q Consensus 450 ~~~~~~~~~l-------~~L~~L~Ls~N~l~~~~p~~~~--~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~Ldls~N~l 520 (1007)
.+.+..+... ++|+.|++++|+++ .+|..+. .+++|+.|++++|++++ +|..+..+++|+.|++++|+
T Consensus 471 ~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~- 547 (636)
T 4eco_A 471 EIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQR- 547 (636)
T ss_dssp BCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCB-
T ss_pred CCCHHHHCCCCCCCCCCCCCCEEECCCCCCC-CCCHHHHHCCCCCCCEEECCCCCCCC-CCHHHHCCCCCCEEECCCCC-
T ss_conf 7397884044001221477338989699388-16854534458876989898998877-68235308887878898886-
Q ss_pred CCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCC
Q ss_conf 798865546633346584756437787520014888864895656656565684476999998887879846435
Q 001838 521 DGPLSLDIGNLKVVIELNLSRNNLSGDIPITIGGLKNLQKLFLANNRLEGPIPESFSGLSSLEILDLSKNKISGV 595 (1007)
Q Consensus 521 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ 595 (1007)
++++|.+.+.+|..+..+++|+.|+|++|+++ .+|..+. ++|+.||+++|++...
T Consensus 548 -----------------~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~ 602 (636)
T 4eco_A 548 -----------------DAQGNRTLREWPEGITLCPSLTQLQIGSNDIR-KVNEKIT--PNISVLDIKDNPNISI 602 (636)
T ss_dssp -----------------CTTCCBCCCCCCTTGGGCSSCCEEECCSSCCC-BCCSCCC--TTCCEEECCSCTTCEE
T ss_pred -----------------CCCCCCCCCCCHHHHHCCCCCCEEECCCCCCC-CCCHHHH--CCCCEEECCCCCCCCC
T ss_conf -----------------65667312127377856998788989899477-0597683--8678998769987633
No 8
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=1.00 E-value=1 Score=479.07 Aligned_cols=537 Identities=21% Similarity=0.222 Sum_probs=445.1
Q ss_pred EEEECCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCHHHHHHCCCCCEECCCCCC
Q ss_conf 99907998754476366699999999769997999889543375667287466764578622446404888701166764
Q 001838 72 VLNISGFNLQGTIPPQLGNLSSLETLDLSHNKLSGNIPSSIFNMHTLKLLDFRDNQLFGSLSSFIFNMSSMLGIDLSINR 151 (1007)
Q Consensus 72 ~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~LdLs~N~ 151 (1007)
.++.++.+++ .+|..+.. .+++|||++|.++++.|.+|.++++|++|+|++|.+.+..+..|.++++|+.|+|++|+
T Consensus 16 ~~~c~~~~l~-~iP~~l~~--~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~ 92 (606)
T 3t6q_A 16 TYNCENLGLN-EIPGTLPN--STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANP 92 (606)
T ss_dssp EEECTTSCCS-SCCTTSCT--TCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred EEECCCCCCC-CCCCCCCC--CCCEEECCCCCCCCCCHHHHCCCCCCEEEECCCCCCCEECHHHCCCCCCCCEEECCCCC
T ss_conf 3777779806-28677898--67589815873471796672567665289788983552485113684336764488985
Q ss_pred CCCCCCHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCC
Q ss_conf 58977256851299986897668524456986456888895898313447798985655656565588026867898884
Q 001838 152 FSGELPANICKNLPNLKKLLLGRNMFHGKIPSTLSKCKQLEGLYLRFNNLSGAIPKEIGNLTKLKDIILNDNELRGEIPQ 231 (1007)
Q Consensus 152 ~~~~~p~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~ 231 (1007)
+.+ +++..+.++++|++|++++|++++..+..|.++++|++|++++|.+.+.....+.++++|++|++++|.+++..+.
T Consensus 93 l~~-~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 171 (606)
T 3t6q_A 93 LIF-MAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKE 171 (606)
T ss_dssp CSE-ECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHH
T ss_pred CCC-CCHHHHCCCCCCCEEECCCCCCCCCCCCHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCHH
T ss_conf 654-5865523442153765212676657810122378223898879834114765456876568777656844554965
Q ss_pred CCCCCCCCC--EEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCCCCCCCC
Q ss_conf 457855444--432147646544541112788888388126546676880000379987579625877887799444366
Q 001838 232 EMGNLPYLV--RLTLATNNLVGVVPFTIFNMSTLKKLSLLENTLWGSLPSRIDLSLPNVEFLNLGTNRFSGNIPSSITNA 309 (1007)
Q Consensus 232 ~~~~l~~L~--~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~ 309 (1007)
.|+.+++|+ .|+++.|.+.+..|..+.. .++++|+++.|.. ++. ....+.++....+..+.+..
T Consensus 172 ~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~-~~L~~L~l~~~~~---~~~-~~~~l~~~~l~~l~~~~~~~--------- 237 (606)
T 3t6q_A 172 DMSSLQQATNLSLNLNGNDIAGIEPGAFDS-AVFQSLNFGGTQN---LLV-IFKGLKNSTIQSLWLGTFED--------- 237 (606)
T ss_dssp HHHTTTTCCSEEEECTTCCCCEECTTTTTT-CEEEEEECTTCSC---HHH-HHHHTTTCEEEEEECCCCTT---------
T ss_pred HHHHHCCCCEEEEECCCCCCCCCCHHHHHH-CCCCCCCCCCCHH---HHH-HHHHCCCCCHHHEECHHHCC---------
T ss_conf 633221564038966798147548667300-1001355677266---777-76513356442200201102---------
Q ss_pred CCCCEEEECCCCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCC
Q ss_conf 8998999238976787775444645--53301232501126889842123456665430998347779897878745322
Q 001838 310 SKLTVFQLRGNSFSGFIPNTIGNLR--NLEFLNIADNYLTSSTPELSFLSSLTNCQKIRVLILAGNPLDGILPSSIGNLS 387 (1007)
Q Consensus 310 ~~L~~L~Ls~N~l~~~~p~~~~~l~--~L~~L~Ls~N~l~~~~~~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~ 387 (1007)
+. ...+.+..+..+. +|+.|++++|.+++..+. .+.++++|+.|++++|.+. .+|..+..++
T Consensus 238 --~~--------~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~-----~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~ 301 (606)
T 3t6q_A 238 --MD--------DEDISPAVFEGLCEMSVESINLQKHYFFNISSN-----TFHCFSGLQELDLTATHLS-ELPSGLVGLS 301 (606)
T ss_dssp --SC--------CCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTT-----TTTTCTTCSEEECTTSCCS-CCCSSCCSCT
T ss_pred --CC--------CCCCCHHHHCHHHCCCEEEEEEECCCCCCCCHH-----HHCCCCCCCEEECCCCCCC-CCCHHHCCCC
T ss_conf --64--------122686674303207505999445765855777-----7445667888956288267-7782141654
Q ss_pred CCCCEEEECCCCCCCCCCHHHHCCCCCCEEECCCCEECCCCC-HHHHHCCCCCCCCCCCCCCCCCC--CHHHHCCCCCCE
Q ss_conf 132424501443466689534214787589812980013345-32220246683135887358888--621103665664
Q 001838 388 ISLERFQMFNCRISGKIPQVISNLSNLLLLDLGGNKLTGSIP-VTFSRLLNLQGLGLAFNKLARSI--PDEICHLAKLDK 464 (1007)
Q Consensus 388 ~~l~~L~l~~n~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~--~~~~~~l~~L~~ 464 (1007)
+++.|++++|.+.+..|..+..+++|+.|++++|.+.+.+| ..+..+++|++|++++|.+.+.. +..+..+++|+.
T Consensus 302 -~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~ 380 (606)
T 3t6q_A 302 -TLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQS 380 (606)
T ss_dssp -TCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCE
T ss_pred -CCCEEECCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCCCHHCCCCCCCCE
T ss_conf -6888977168768676023301576898889899744434624550667589887889966645675221056788898
Q ss_pred EECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCC
Q ss_conf 213334456888887777665715202786556678821-0134333120379897679886554663334658475643
Q 001838 465 LILHGNKFSGAIPSCSGNLTSLRALYLGSNRFTSALPST-IWNLKDILFFDVSSNSLDGPLSLDIGNLKVVIELNLSRNN 543 (1007)
Q Consensus 465 L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~-~~~l~~L~~Ldls~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 543 (1007)
|++++|++.+..|..+..+++|+.|++++|.+.+..+.. +..+++|+.|++++|.+.+..+..++.++.|++|++++|.
T Consensus 381 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 460 (606)
T 3t6q_A 381 LNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNH 460 (606)
T ss_dssp EECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCB
T ss_pred EECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCHHHHHCCCCCCEEECCCCC
T ss_conf 98989967757888734774577687888867775652124176558889898985577687787378878889898998
Q ss_pred CCCC---CCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCHHHHCCCCEEECCCCCCCCCC
Q ss_conf 7787---5200148888648956566565656844769999988878798464359943222057983448589540125
Q 001838 544 LSGD---IPITIGGLKNLQKLFLANNRLEGPIPESFSGLSSLEILDLSKNKISGVIPTSLEKLLYLKKLNLSFNKLEGEI 620 (1007)
Q Consensus 544 l~~~---~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~ 620 (1007)
+.+. .+..+..+++|+.|++++|++++.+|..|..+++|+.|++++|++++..|..+..++.| .|++++|++++..
T Consensus 461 l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~ 539 (606)
T 3t6q_A 461 FPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIIL 539 (606)
T ss_dssp CGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCC
T ss_pred CCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHHCCCCCC-EEECCCCCCCCCC
T ss_conf 885434543124048876688799996670686463265678889898980686896684756651-8987689414268
Q ss_pred CCC-CCCCCCCCCCCCCCCCCCCCC
Q ss_conf 999-967777644334455358988
Q 001838 621 PRG-GPFANLTAKSFLGNELLCGLP 644 (1007)
Q Consensus 621 p~~-~~~~~~~~~~~~~n~~lc~~p 644 (1007)
|.. ..+..+....+.+|++.|.++
T Consensus 540 ~~~~~~l~~L~~L~l~~N~~~c~c~ 564 (606)
T 3t6q_A 540 PSLLPILSQQRTINLRQNPLDCTCS 564 (606)
T ss_dssp GGGHHHHHTSSEEECTTCCEECSGG
T ss_pred HHHCCCCCCCCEEECCCCCCCCCCC
T ss_conf 7662567787889677998616677
No 9
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=1.00 E-value=1 Score=478.12 Aligned_cols=521 Identities=18% Similarity=0.220 Sum_probs=298.3
Q ss_pred CCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCC-----CC--CCC------------CCEEECCCCCCEEEEEECCCCCCC
Q ss_conf 99100999999997334599974446878999-----98--643------------204737999938999907998754
Q 001838 22 NITTDQQSLLALKAHISYDPTNLFAKNWTSST-----SV--CSW------------IGITCGVNSHKVIVLNISGFNLQG 82 (1007)
Q Consensus 22 ~~~~~~~~ll~~k~~~~~~~~~~~~~~w~~~~-----~~--c~w------------~gv~c~~~~~~v~~L~L~~n~l~~ 82 (1007)
+..+|++||++||+++. +| +|+.+. +| |+| .||.|+. .++|+.|+|+++++.|
T Consensus 266 ~~~~d~~ALl~~k~~l~-~~------~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~-~~~V~~L~Ls~~~L~G 337 (876)
T 4ecn_A 266 EYIKDYKALKAIWEALD-GK------NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDN-NGRVTGLSLAGFGAKG 337 (876)
T ss_dssp HHHHHHHHHHHHHHHTT-GG------GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECT-TSCEEEEECTTTCCEE
T ss_pred CCHHHHHHHHHHHHHCC-CC------CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECC-CCCEEEEECCCCCCCC
T ss_conf 63178999999999737-99------9886898653367764034666545335768428369-9979899872478999
Q ss_pred CCCCCCCCCCCCCEEEC-CCCCCCCCCCCCCCCC----CCCCEEECC------------CCCCCCCCHHHHHHCCCCCEE
Q ss_conf 47636669999999976-9997999889543375----667287466------------764578622446404888701
Q 001838 83 TIPPQLGNLSSLETLDL-SHNKLSGNIPSSIFNM----HTLKLLDFR------------DNQLFGSLSSFIFNMSSMLGI 145 (1007)
Q Consensus 83 ~~~~~l~~l~~L~~L~L-s~N~l~~~~p~~~~~l----~~L~~L~Ls------------~N~l~~~~~~~~~~l~~L~~L 145 (1007)
.+|+++++|++|++||| ++|.+.|..|-..... +..+...++ ...+....+..+...+...
T Consensus 338 ~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~~~~~-- 415 (876)
T 4ecn_A 338 RVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMK-- 415 (876)
T ss_dssp EECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTCTTSC--
T ss_pred CCCHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCC--
T ss_conf 485577415556284301256335666422234454411567888777666654203751115678787765073324--
Q ss_pred CCCCCCCCCCCCHHHHHCCCCCCEEECCC--CCCCCCCCCCCCCCCCCCEEECCCCCCCC-----------------CCC
Q ss_conf 16676458977256851299986897668--52445698645688889589831344779-----------------898
Q 001838 146 DLSINRFSGELPANICKNLPNLKKLLLGR--NMFHGKIPSTLSKCKQLEGLYLRFNNLSG-----------------AIP 206 (1007)
Q Consensus 146 dLs~N~~~~~~p~~~~~~l~~L~~L~Ls~--N~l~~~~p~~~~~l~~L~~L~L~~N~l~~-----------------~~p 206 (1007)
+. .......++.+.++. |++++ +|..|.++++|+.|+|++|.+++ .+|
T Consensus 416 -----------~i-~~~~~l~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP 482 (876)
T 4ecn_A 416 -----------PI-KKDSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYEN 482 (876)
T ss_dssp -----------CC-CCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTT
T ss_pred -----------CC-CCCCCCCHHHCEECCCCCCCCC-HHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf -----------32-2235442312040566676152-1188756999878979688678874653223322222244587
Q ss_pred CCCC--CCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCC-CCC-CCCCCCCCCC-------CCCEEECCCCCCCC
Q ss_conf 5655--65656558802686789888445785544443214764-654-4541112788-------88838812654667
Q 001838 207 KEIG--NLTKLKDIILNDNELRGEIPQEMGNLPYLVRLTLATNN-LVG-VVPFTIFNMS-------TLKKLSLLENTLWG 275 (1007)
Q Consensus 207 ~~~~--~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~-l~~-~~p~~~~~l~-------~L~~L~L~~N~l~~ 275 (1007)
..++ ++++|++|+|++|++.+.+|..|+++++|+.|+++.|. +++ .+|..+..+. +|+.|++++|.+.
T Consensus 483 ~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~- 561 (876)
T 4ecn_A 483 EELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE- 561 (876)
T ss_dssp SCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-
T ss_pred HHHHHCCCCCCCEEECCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCCHHHHHHHHHCCCCCCCCCEEEEECCCCC-
T ss_conf 4440255999778987189887527387737999899989689876566461778752330155688319982289477-
Q ss_pred CCCC-HHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCC
Q ss_conf 6880-00037998757962587788779944436689989992389767877754446455-330123250112688984
Q 001838 276 SLPS-RIDLSLPNVEFLNLGTNRFSGNIPSSITNASKLTVFQLRGNSFSGFIPNTIGNLRN-LEFLNIADNYLTSSTPEL 353 (1007)
Q Consensus 276 ~~~~-~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~-L~~L~Ls~N~l~~~~~~~ 353 (1007)
.+|. ..+..+++|+.|++++|+++ .+| .+..+++|+.|++++|.+. .+|..+..+.+ |+.|++++|.++.++.
T Consensus 562 ~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~~lp~-- 636 (876)
T 4ecn_A 562 EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLKYIPN-- 636 (876)
T ss_dssp BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCCSCCS--
T ss_pred CCCCHHHHHCCCCCCEEECCCCCCC-CCH-HHCCCCCCEEEECCCCCCC-CCHHHHHHCCCCCCEEECCCCCCCCCCH--
T ss_conf 6187235515898898989799825-621-2247985007987187125-0358775251149899984997874764--
Q ss_pred CCCCCCCCC--CCCCEEECCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCHHHHCCCCCCEEECCCCEECCCCCHH
Q ss_conf 212345666--543099834777989787874532213242450144346668953421478758981298001334532
Q 001838 354 SFLSSLTNC--QKIRVLILAGNPLDGILPSSIGNLSISLERFQMFNCRISGKIPQVISNLSNLLLLDLGGNKLTGSIPVT 431 (1007)
Q Consensus 354 ~~~~~l~~l--~~L~~L~L~~N~l~~~~p~~~~~l~~~l~~L~l~~n~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~ 431 (1007)
.+..+ +.|+.|++++|.+.+.+|.....+. ...+.+|+.|++++|++...++..
T Consensus 637 ----~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~--------------------~~~~~~L~~L~Ls~N~L~~lp~~~ 692 (876)
T 4ecn_A 637 ----IFNAKSVYVMGSVDFSYNKIGSEGRNISCSMD--------------------DYKGINASTVTLSYNEIQKFPTEL 692 (876)
T ss_dssp ----CCCTTCSSCEEEEECCSSCTTTTSSSCSSCTT--------------------TCCCCCEEEEECCSSCCCSCCHHH
T ss_pred ----HHHCCCCCCCCEEECCCCCCCCCCCCCHHHHC--------------------CCCCCCCCEEECCCCCCCCCCHHH
T ss_conf ----45225567778897708847886432000000--------------------135797688983199688659788
Q ss_pred HHHCCCCCCCCCCCCCCCCCCCHHHH-------CCCCCCEEECCCCCCCCCCCCCCC--CCCCCCEEECCCCCCCCCCCC
Q ss_conf 22024668313588735888862110-------366566421333445688888777--766571520278655667882
Q 001838 432 FSRLLNLQGLGLAFNKLARSIPDEIC-------HLAKLDKLILHGNKFSGAIPSCSG--NLTSLRALYLGSNRFTSALPS 502 (1007)
Q Consensus 432 ~~~l~~L~~L~Ls~N~l~~~~~~~~~-------~l~~L~~L~Ls~N~l~~~~p~~~~--~l~~L~~L~Ls~N~l~~~~p~ 502 (1007)
+..+++|+.|+|++|++..+.+..+. ++++|+.|+|++|+++ .+|..+. .+++|+.|++++|.+.+ +|.
T Consensus 693 ~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~ 770 (876)
T 4ecn_A 693 FATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPT 770 (876)
T ss_dssp HHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCC
T ss_pred HCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCCCCCCCCEEECCCCCCC-CCHHHHHHCCCCCCCEEEECCCCCCC-CCH
T ss_conf 7138988999898996885496784555334321487158988899786-65277624427986989908997876-105
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCC
Q ss_conf 10134333120379897679886554663334658475643778752001488886489565665656568447699999
Q 001838 503 TIWNLKDILFFDVSSNSLDGPLSLDIGNLKVVIELNLSRNNLSGDIPITIGGLKNLQKLFLANNRLEGPIPESFSGLSSL 582 (1007)
Q Consensus 503 ~~~~l~~L~~Ldls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L 582 (1007)
.+..+++|+.|++++|+ ++++|.+.+.+|..+..+++|+.|+|++|++ +.+|..+. ++|
T Consensus 771 ~l~~L~~L~~L~Ls~N~------------------~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L 829 (876)
T 4ecn_A 771 QPLNSSQLKAFGIRHQR------------------DAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQL 829 (876)
T ss_dssp GGGGCTTCCEEECCCCB------------------CTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSS
T ss_pred HHHCCCCCCEEECCCCC------------------CCCCCCCCCCCHHHHHCCCCCCEEECCCCCC-CCCCHHHC--CCC
T ss_conf 66159998899887997------------------7665632444868883699878898879978-74087662--877
Q ss_pred CEEECCCCCCCCCCCCCHHHHCCCCEEECCCCCCCC
Q ss_conf 888787984643599432220579834485895401
Q 001838 583 EILDLSKNKISGVIPTSLEKLLYLKKLNLSFNKLEG 618 (1007)
Q Consensus 583 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~ 618 (1007)
+.||+++|++....+..+.....+..+.+.+|++..
T Consensus 830 ~~LdLs~N~l~~i~~~~~~~~~~~~~~~L~~n~~~~ 865 (876)
T 4ecn_A 830 YILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQD 865 (876)
T ss_dssp CEEECCSCTTCEEECGGGHHHHHTTCCEEECCTTSE
T ss_pred CEEECCCCCCCCCCHHHCCCCCCCHHEEECCCCCCC
T ss_conf 889997998881176772565423110346888655
No 10
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=1.00 E-value=1 Score=477.42 Aligned_cols=536 Identities=21% Similarity=0.205 Sum_probs=412.3
Q ss_pred EEEEECCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCC-CHHHHHHCCCCCEECCCC
Q ss_conf 9999079987544763666999999997699979998895433756672874667645786-224464048887011667
Q 001838 71 IVLNISGFNLQGTIPPQLGNLSSLETLDLSHNKLSGNIPSSIFNMHTLKLLDFRDNQLFGS-LSSFIFNMSSMLGIDLSI 149 (1007)
Q Consensus 71 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~LdLs~ 149 (1007)
...|.++++++. +|. -.+++++|||++|.++++.|..|.++++|++|||++|.+.+. .+..|.++++|+.|+|++
T Consensus 7 ~~~dcs~~~L~~-vP~---lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~ 82 (844)
T 3j0a_A 7 RIAFYRFCNLTQ-VPQ---VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGS 82 (844)
T ss_dssp EEEEESCCCSSC-CCS---SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTT
T ss_pred EEEECCCCCCCC-CCC---CCCCCCEEECCCCCCCCCCHHHCCCCCCCEEEECCCCCCCCCCCHHHHCCCCCCCEEECCC
T ss_conf 489823799777-898---9998688888778678329667766213708867899774441977853787788887989
Q ss_pred CCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCCC--CCCCCCCCEEECCCCCCCCCCC-CCCCCCCCCCEEECCCCCCC
Q ss_conf 64589772568512999868976685244569864--5688889589831344779898-56556565655880268678
Q 001838 150 NRFSGELPANICKNLPNLKKLLLGRNMFHGKIPST--LSKCKQLEGLYLRFNNLSGAIP-KEIGNLTKLKDIILNDNELR 226 (1007)
Q Consensus 150 N~~~~~~p~~~~~~l~~L~~L~Ls~N~l~~~~p~~--~~~l~~L~~L~L~~N~l~~~~p-~~~~~l~~L~~L~Ls~N~l~ 226 (1007)
|.+.+ +++..+.++++|++|+|++|.+++..|.. |.++++|++|+|++|.+.+..+ ..|.++++|++|++++|.++
T Consensus 83 N~l~~-~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~ 161 (844)
T 3j0a_A 83 SKIYF-LHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIF 161 (844)
T ss_dssp CCCCE-ECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCC
T ss_pred CCCCC-CCHHHCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCHHHHHCCCCCEEECCCCCCC
T ss_conf 95853-19767157866587017678897340467645566799988898786423256655763889898989898477
Q ss_pred CCCCCCCCCC--CCCCEEECCCCCCCCCCCCCCCCCCC------CCEEECCCCCCCCCCCCHHHCC--CCCCCEEECCCC
Q ss_conf 9888445785--54444321476465445411127888------8838812654667688000037--998757962587
Q 001838 227 GEIPQEMGNL--PYLVRLTLATNNLVGVVPFTIFNMST------LKKLSLLENTLWGSLPSRIDLS--LPNVEFLNLGTN 296 (1007)
Q Consensus 227 ~~~p~~~~~l--~~L~~L~Ls~N~l~~~~p~~~~~l~~------L~~L~L~~N~l~~~~~~~~~~~--l~~L~~L~Ls~N 296 (1007)
+..+..+..+ ++|+.|+++.|.+.+..|..+..+.+ |+.|+++.|.+.+..+..+... ...++.+.++.+
T Consensus 162 ~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~ 241 (844)
T 3j0a_A 162 LVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHH 241 (844)
T ss_dssp CCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSS
T ss_pred EECHHHCCCCCCCCCCEEECCCCCCCCCCCCCHHHCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHCCCCCCCCEECCCC
T ss_conf 66788753556775035789788666554553322377223574007965788686567788876427441001121212
Q ss_pred CCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCC
Q ss_conf 7887799444366899899923897678777544464--55330123250112688984212345666543099834777
Q 001838 297 RFSGNIPSSITNASKLTVFQLRGNSFSGFIPNTIGNL--RNLEFLNIADNYLTSSTPELSFLSSLTNCQKIRVLILAGNP 374 (1007)
Q Consensus 297 ~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l--~~L~~L~Ls~N~l~~~~~~~~~~~~l~~l~~L~~L~L~~N~ 374 (1007)
.+... +..+.+.+..+..|..+ .+|+.|++++|.+.+..+. .+.+++.|+.|+|++|.
T Consensus 242 ~~~~~---------------~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~-----~~~~l~~L~~L~L~~n~ 301 (844)
T 3j0a_A 242 IMGAG---------------FGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSR-----VFETLKDLKVLNLAYNK 301 (844)
T ss_dssp CCBCS---------------SSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSC-----CSSSCCCCCEEEEESCC
T ss_pred CCCCC---------------CCCCCCCCCCHHHHHCCCCCCCCEEECCCCCCCCCCHH-----HHHCCCCCCEEECCCCC
T ss_conf 23466---------------44456688985565255547861898979945515863-----45258999999897981
Q ss_pred CCCCCCCCCCCCCCCCCEEEECCCCCCCCCCHHHHCCCCCCEEECCCCEECCCCCHHHHHCCCCCCCCCCCCCCCCCCCH
Q ss_conf 98978787453221324245014434666895342147875898129800133453222024668313588735888862
Q 001838 375 LDGILPSSIGNLSISLERFQMFNCRISGKIPQVISNLSNLLLLDLGGNKLTGSIPVTFSRLLNLQGLGLAFNKLARSIPD 454 (1007)
Q Consensus 375 l~~~~p~~~~~l~~~l~~L~l~~n~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~ 454 (1007)
+.+..|..+..++ +|+.|++++|.+.+..|..|..+++|+.|++++|.+.+..+..|..+++|+.|++++|.+.+..
T Consensus 302 i~~~~~~~~~~l~-~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~-- 378 (844)
T 3j0a_A 302 INKIADEAFYGLD-NLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIH-- 378 (844)
T ss_dssp CCEECTTTTTTCS-SCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCS--
T ss_pred CCCCCHHHHCCCC-CCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCC--
T ss_conf 8987968836888-9998989899788518788468999998989899877628666137888999889899778616--
Q ss_pred HHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCC-CCCCCC
Q ss_conf 110366566421333445688888777766571520278655667882-101343331203798976798865-546633
Q 001838 455 EICHLAKLDKLILHGNKFSGAIPSCSGNLTSLRALYLGSNRFTSALPS-TIWNLKDILFFDVSSNSLDGPLSL-DIGNLK 532 (1007)
Q Consensus 455 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~-~~~~l~~L~~Ldls~N~l~~~~~~-~~~~l~ 532 (1007)
.+++|+.|++++|+++. +|.. ..+++.|++++|++...... .+..+++|+.|++++|++++..+. .+..++
T Consensus 379 ---~~~~L~~L~l~~N~l~~-l~~~---~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~ 451 (844)
T 3j0a_A 379 ---FIPSIPDIFLSGNKLVT-LPKI---NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENP 451 (844)
T ss_dssp ---SCCSCSEEEEESCCCCC-CCCC---CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCT
T ss_pred ---CCCCCCHHCCCCCCCCC-CCCC---CCCCCEEECCCCCCCCCCHHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCC
T ss_conf ---88982320058997231-4554---5543122145675345755666512776666667787125555433356687
Q ss_pred CCCEEECCCCCCC-----CCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCHHHHCCCC
Q ss_conf 3465847564377-----87520014888864895656656565684476999998887879846435994322205798
Q 001838 533 VVIELNLSRNNLS-----GDIPITIGGLKNLQKLFLANNRLEGPIPESFSGLSSLEILDLSKNKISGVIPTSLEKLLYLK 607 (1007)
Q Consensus 533 ~L~~L~Ls~N~l~-----~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~ 607 (1007)
.|+.|++++|.++ +..+..|.++++|+.|+|++|++++.+|..|.++++|+.|+|++|+|++..|..+. ++|+
T Consensus 452 ~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~ 529 (844)
T 3j0a_A 452 SLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLE 529 (844)
T ss_dssp TCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCC
T ss_pred CCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHCCCHHHHHEEECCCCCCCCCCHHHHH--CCCC
T ss_conf 31002477773644101355355544755365777889856553955704501221569999978745710110--0455
Q ss_pred EEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 34485895401259999677776443344553589888
Q 001838 608 KLNLSFNKLEGEIPRGGPFANLTAKSFLGNELLCGLPD 645 (1007)
Q Consensus 608 ~L~ls~N~l~~~~p~~~~~~~~~~~~~~~n~~lc~~p~ 645 (1007)
.|++++|++++.+|.. |..+....+.+|++.|+++.
T Consensus 530 ~L~Ls~N~l~~~~~~~--~~~L~~l~l~~Np~~C~c~~ 565 (844)
T 3j0a_A 530 ILDISRNQLLAPNPDV--FVSLSVLDITHNKFICECEL 565 (844)
T ss_dssp EEEEEEECCCCCCSCC--CSSCCEEEEEEECCCCSSSC
T ss_pred EEECCCCCCCCCCHHH--HCCCCEEEECCCCCCCCCCC
T ss_conf 8889888478889668--37768899319970253661
Done!