Query 001839
Match_columns 1007
No_of_seqs 255 out of 769
Neff 5.7
Searched_HMMs 46136
Date Fri Mar 29 10:32:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001839.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001839hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1060 Vesicle coat complex A 100.0 2E-180 3E-185 1544.0 62.4 816 1-1000 132-968 (968)
2 PTZ00429 beta-adaptin; Provisi 100.0 6.1E-79 1.3E-83 736.8 41.5 443 1-564 129-594 (746)
3 KOG1061 Vesicle coat complex A 100.0 1.3E-68 2.8E-73 624.8 29.3 440 1-563 110-573 (734)
4 PF01602 Adaptin_N: Adaptin N 100.0 4.7E-55 1E-59 514.9 26.1 410 1-506 103-524 (526)
5 COG5096 Vesicle coat complex, 100.0 3.2E-45 6.9E-50 436.0 28.2 405 1-506 116-562 (757)
6 KOG1062 Vesicle coat complex A 100.0 2.6E-34 5.7E-39 335.9 42.7 449 2-569 132-622 (866)
7 PF14796 AP3B1_C: Clathrin-ada 100.0 7.9E-35 1.7E-39 287.6 10.7 94 721-835 52-145 (145)
8 KOG1077 Vesicle coat complex A 100.0 6.1E-33 1.3E-37 319.1 27.3 426 7-542 141-605 (938)
9 KOG1058 Vesicle coat complex C 99.9 9.5E-26 2.1E-30 261.9 18.9 321 1-424 123-463 (948)
10 KOG1059 Vesicle coat complex A 99.8 8.1E-19 1.7E-23 204.3 30.0 402 2-505 134-576 (877)
11 KOG1078 Vesicle coat complex C 99.7 3.3E-14 7.1E-19 168.0 28.6 278 210-506 247-532 (865)
12 COG5240 SEC21 Vesicle coat com 99.6 8.3E-14 1.8E-18 159.4 29.4 274 216-506 272-555 (898)
13 KOG1060 Vesicle coat complex A 99.5 3.5E-10 7.5E-15 134.3 40.5 126 802-937 768-914 (968)
14 PF01602 Adaptin_N: Adaptin N 98.6 1.8E-06 3.8E-11 102.8 18.8 67 9-78 76-142 (526)
15 PF12717 Cnd1: non-SMC mitotic 98.2 8.2E-06 1.8E-10 84.7 9.7 112 3-115 16-138 (178)
16 PTZ00429 beta-adaptin; Provisi 98.1 0.0037 8E-08 78.2 32.2 84 19-105 75-158 (746)
17 PRK13800 putative oxidoreducta 97.9 0.00054 1.2E-08 87.8 22.1 90 13-114 622-711 (897)
18 PRK09687 putative lyase; Provi 97.9 0.00083 1.8E-08 75.0 19.3 236 13-361 24-263 (280)
19 PRK13800 putative oxidoreducta 97.6 0.0037 8E-08 80.3 21.5 228 12-360 652-880 (897)
20 PRK09687 putative lyase; Provi 97.3 0.012 2.6E-07 65.8 18.7 221 13-338 55-278 (280)
21 PF10508 Proteasom_PSMB: Prote 97.1 0.22 4.8E-06 60.2 28.0 110 7-116 72-189 (503)
22 KOG1062 Vesicle coat complex A 96.9 0.21 4.4E-06 61.9 24.1 93 727-843 747-842 (866)
23 cd00020 ARM Armadillo/beta-cat 96.8 0.0044 9.5E-08 58.1 7.8 102 13-114 8-118 (120)
24 PLN03200 cellulose synthase-in 96.7 0.19 4.2E-06 68.6 24.5 280 14-395 448-769 (2102)
25 PLN03200 cellulose synthase-in 96.5 0.85 1.8E-05 62.7 28.2 378 14-487 490-934 (2102)
26 KOG2023 Nuclear transport rece 96.4 0.85 1.8E-05 55.7 25.0 405 7-506 388-854 (885)
27 PF13646 HEAT_2: HEAT repeats; 96.4 0.016 3.4E-07 52.2 8.2 83 16-111 3-87 (88)
28 KOG2171 Karyopherin (importin) 96.2 1.6 3.6E-05 56.2 26.8 255 14-356 161-433 (1075)
29 KOG1059 Vesicle coat complex A 96.0 1.5 3.2E-05 54.2 24.0 240 8-360 105-346 (877)
30 PF02985 HEAT: HEAT repeat; I 95.8 0.011 2.5E-07 44.0 3.6 29 13-41 1-29 (31)
31 PF14764 SPG48: AP-5 complex s 95.8 0.18 3.8E-06 59.8 15.0 121 385-507 292-447 (459)
32 KOG2171 Karyopherin (importin) 95.6 9.7 0.00021 49.5 30.0 398 21-508 89-551 (1075)
33 KOG0413 Uncharacterized conser 95.5 0.83 1.8E-05 57.6 19.4 171 325-504 876-1071(1529)
34 COG5096 Vesicle coat complex, 95.4 1.2 2.5E-05 56.0 20.8 88 12-102 92-181 (757)
35 PF13513 HEAT_EZ: HEAT-like re 95.3 0.03 6.5E-07 46.7 4.8 52 26-77 1-55 (55)
36 KOG0212 Uncharacterized conser 95.2 6 0.00013 47.9 24.6 290 10-390 82-406 (675)
37 PF05804 KAP: Kinesin-associat 95.1 1.4 3.1E-05 55.3 20.6 122 262-393 470-610 (708)
38 PF04826 Arm_2: Armadillo-like 94.7 1.2 2.6E-05 49.4 16.8 94 23-116 24-124 (254)
39 KOG0213 Splicing factor 3b, su 94.6 17 0.00037 45.5 27.3 450 12-504 553-1063(1172)
40 KOG2259 Uncharacterized conser 94.5 1.2 2.6E-05 54.4 17.0 88 10-99 196-293 (823)
41 PF12717 Cnd1: non-SMC mitotic 94.5 0.21 4.6E-06 52.0 9.8 91 25-116 1-92 (178)
42 TIGR02270 conserved hypothetic 94.4 1.5 3.2E-05 52.0 17.5 225 11-360 53-279 (410)
43 smart00809 Alpha_adaptinC2 Ada 94.3 0.46 9.9E-06 44.7 10.6 92 734-851 3-95 (104)
44 PF12755 Vac14_Fab1_bd: Vacuol 94.1 0.15 3.2E-06 48.4 6.9 66 5-70 20-88 (97)
45 PF14807 AP4E_app_platf: Adapt 94.0 0.4 8.6E-06 46.2 9.6 104 861-1001 1-104 (104)
46 PF10508 Proteasom_PSMB: Prote 93.7 0.77 1.7E-05 55.7 13.7 194 257-464 16-231 (503)
47 KOG1824 TATA-binding protein-i 93.7 1.8 3.9E-05 54.8 16.5 170 311-492 129-314 (1233)
48 KOG1058 Vesicle coat complex C 93.6 0.97 2.1E-05 55.8 14.0 279 202-505 93-380 (948)
49 KOG1241 Karyopherin (importin) 93.6 6.6 0.00014 49.1 20.8 342 7-466 318-713 (859)
50 KOG0166 Karyopherin (importin) 93.4 7.6 0.00016 47.1 20.7 240 19-343 116-394 (514)
51 PF12719 Cnd3: Nuclear condens 93.0 3.1 6.8E-05 46.9 16.4 131 312-477 25-157 (298)
52 KOG1020 Sister chromatid cohes 92.6 51 0.0011 44.5 28.7 106 255-360 1049-1171(1692)
53 KOG1242 Protein containing ada 92.6 7.6 0.00017 47.5 19.4 110 6-116 211-324 (569)
54 PF05804 KAP: Kinesin-associat 91.9 5.4 0.00012 50.4 17.7 279 209-505 332-648 (708)
55 KOG2023 Nuclear transport rece 91.9 15 0.00032 45.6 20.3 74 8-81 86-159 (885)
56 PF13646 HEAT_2: HEAT repeats; 91.7 0.43 9.2E-06 42.8 6.1 56 12-74 31-87 (88)
57 COG5181 HSH155 U2 snRNP splice 91.1 47 0.001 41.1 24.8 68 10-78 356-427 (975)
58 PF12348 CLASP_N: CLASP N term 91.0 0.45 9.8E-06 50.8 6.4 145 206-352 51-216 (228)
59 cd00256 VATPase_H VATPase_H, r 90.5 32 0.0007 41.1 21.5 65 398-466 357-427 (429)
60 TIGR02270 conserved hypothetic 89.0 23 0.0005 42.1 18.8 89 13-115 87-175 (410)
61 PF14797 SEEEED: Serine-rich r 88.9 0.48 1E-05 46.1 3.9 15 596-610 3-17 (130)
62 KOG1824 TATA-binding protein-i 88.5 75 0.0016 41.3 22.9 130 202-361 168-309 (1233)
63 KOG1078 Vesicle coat complex C 88.1 14 0.0003 46.5 16.3 199 739-988 635-856 (865)
64 PF13513 HEAT_EZ: HEAT-like re 87.1 0.68 1.5E-05 38.5 3.4 33 7-39 23-55 (55)
65 cd00020 ARM Armadillo/beta-cat 86.9 1.3 2.9E-05 41.2 5.6 67 12-78 49-119 (120)
66 COG5240 SEC21 Vesicle coat com 85.8 99 0.0021 38.2 25.0 112 216-360 348-460 (898)
67 COG5098 Chromosome condensatio 85.4 2.1 4.6E-05 52.5 7.5 70 9-78 343-414 (1128)
68 PF12348 CLASP_N: CLASP N term 85.4 7.1 0.00015 41.6 11.0 173 20-276 15-211 (228)
69 KOG1525 Sister chromatid cohes 85.3 12 0.00027 49.9 14.9 203 294-506 238-472 (1266)
70 COG1413 FOG: HEAT repeat [Ener 85.1 28 0.0006 39.5 16.2 92 11-115 42-134 (335)
71 KOG1241 Karyopherin (importin) 84.8 1.2E+02 0.0027 38.5 25.9 293 5-362 399-731 (859)
72 KOG1242 Protein containing ada 84.6 1.1E+02 0.0025 37.8 26.7 394 13-501 19-439 (569)
73 PF10363 DUF2435: Protein of u 84.6 4.9 0.00011 37.9 8.1 77 16-98 7-88 (92)
74 PF02854 MIF4G: MIF4G domain; 84.4 26 0.00057 36.0 14.4 172 298-484 3-182 (209)
75 KOG1077 Vesicle coat complex A 84.3 65 0.0014 40.5 19.0 73 206-279 109-185 (938)
76 PF02883 Alpha_adaptinC2: Adap 84.1 3.7 8E-05 39.4 7.3 86 735-844 8-99 (115)
77 PF12755 Vac14_Fab1_bd: Vacuol 84.0 2.8 6E-05 39.8 6.3 78 28-105 2-86 (97)
78 KOG0212 Uncharacterized conser 83.7 39 0.00084 41.4 16.6 252 10-345 206-483 (675)
79 KOG0211 Protein phosphatase 2A 82.6 12 0.00026 47.6 12.7 257 7-343 393-665 (759)
80 KOG1525 Sister chromatid cohes 81.0 45 0.00098 44.9 17.5 180 275-468 140-333 (1266)
81 PF10633 NPCBM_assoc: NPCBM-as 80.6 2.5 5.3E-05 38.0 4.4 61 755-836 6-66 (78)
82 KOG1061 Vesicle coat complex A 80.3 29 0.00063 43.7 14.6 198 239-451 45-255 (734)
83 PF12765 Cohesin_HEAT: HEAT re 80.1 1.7 3.6E-05 35.0 2.7 25 11-35 17-41 (42)
84 KOG2259 Uncharacterized conser 80.0 1.7E+02 0.0038 36.7 21.6 69 47-116 195-263 (823)
85 KOG1240 Protein kinase contain 79.6 30 0.00064 45.7 14.6 106 244-391 579-686 (1431)
86 KOG2160 Armadillo/beta-catenin 78.1 40 0.00086 39.1 13.9 139 318-466 129-284 (342)
87 COG5215 KAP95 Karyopherin (imp 75.6 2.2E+02 0.0047 35.5 24.7 216 221-465 463-712 (858)
88 KOG1943 Beta-tubulin folding c 75.6 12 0.00025 48.6 9.5 109 5-113 417-551 (1133)
89 KOG0166 Karyopherin (importin) 75.3 18 0.00039 44.0 10.6 142 218-361 120-290 (514)
90 KOG0213 Splicing factor 3b, su 74.2 13 0.00029 46.4 9.2 113 3-115 790-911 (1172)
91 KOG2038 CAATT-binding transcri 73.6 1.6E+02 0.0034 37.7 17.9 291 9-361 301-606 (988)
92 PF12719 Cnd3: Nuclear condens 73.2 1.4E+02 0.003 33.8 16.7 129 208-358 26-160 (298)
93 COG1413 FOG: HEAT repeat [Ener 72.7 12 0.00026 42.3 8.2 81 11-103 73-153 (335)
94 COG1470 Predicted membrane pro 72.3 9.9 0.00021 45.3 7.3 63 757-840 400-462 (513)
95 PF08167 RIX1: rRNA processing 71.1 27 0.00059 36.1 9.6 123 238-397 20-150 (165)
96 KOG1240 Protein kinase contain 70.8 35 0.00075 45.1 12.0 110 7-116 573-685 (1431)
97 KOG1832 HIV-1 Vpr-binding prot 68.9 4.3 9.3E-05 51.2 3.6 54 287-340 753-822 (1516)
98 PF02296 Alpha_adaptin_C: Alph 68.9 34 0.00074 33.5 9.2 104 859-993 1-111 (113)
99 smart00543 MIF4G Middle domain 68.8 1.4E+02 0.0031 30.6 14.6 159 301-483 7-172 (200)
100 PF09066 B2-adapt-app_C: Beta2 67.6 34 0.00074 32.8 8.9 110 860-1000 2-113 (114)
101 PF06685 DUF1186: Protein of u 67.5 12 0.00027 41.4 6.5 75 15-90 114-195 (249)
102 PF02985 HEAT: HEAT repeat; I 67.3 6.6 0.00014 29.1 3.0 28 51-78 1-28 (31)
103 PF04931 DNA_pol_phi: DNA poly 66.5 4.8 0.0001 51.6 3.6 8 527-534 588-595 (784)
104 PF05918 API5: Apoptosis inhib 65.1 13 0.00029 45.5 6.8 79 17-97 28-106 (556)
105 cd03568 VHS_STAM VHS domain fa 64.6 66 0.0014 32.8 10.6 72 208-281 4-76 (144)
106 KOG1991 Nuclear transport rece 63.3 4.7E+02 0.01 34.5 25.7 126 382-508 442-602 (1010)
107 PF08713 DNA_alkylation: DNA a 63.2 11 0.00025 39.6 5.2 70 11-83 119-188 (213)
108 COG5218 YCG1 Chromosome conden 62.7 4E+02 0.0086 33.4 17.9 71 8-80 128-199 (885)
109 KOG0414 Chromosome condensatio 62.5 27 0.00058 45.9 8.8 110 4-116 990-1102(1251)
110 PF05918 API5: Apoptosis inhib 61.3 31 0.00066 42.6 8.8 103 6-115 53-161 (556)
111 KOG0915 Uncharacterized conser 61.0 5E+02 0.011 36.0 19.6 79 25-103 970-1054(1702)
112 KOG4224 Armadillo repeat prote 60.9 1.7E+02 0.0036 34.5 13.8 247 17-345 132-408 (550)
113 PF04826 Arm_2: Armadillo-like 59.0 65 0.0014 35.9 10.2 101 15-115 57-162 (254)
114 smart00638 LPD_N Lipoprotein N 58.1 23 0.00051 43.5 7.3 78 1-81 470-547 (574)
115 KOG2160 Armadillo/beta-catenin 58.1 42 0.00091 38.9 8.7 96 20-116 132-240 (342)
116 cd06561 AlkD_like A new struct 56.3 22 0.00047 37.0 5.8 63 15-79 108-170 (197)
117 PF01603 B56: Protein phosphat 55.9 2.4E+02 0.0053 33.5 15.0 121 377-501 191-321 (409)
118 KOG4224 Armadillo repeat prote 55.4 2.4E+02 0.0051 33.4 13.8 253 14-348 169-452 (550)
119 KOG1189 Global transcriptional 54.4 11 0.00024 47.0 3.5 11 51-61 180-190 (960)
120 COG5181 HSH155 U2 snRNP splice 53.5 5.7E+02 0.012 32.3 22.7 75 4-78 596-674 (975)
121 KOG2140 Uncharacterized conser 53.3 1.2E+02 0.0026 37.1 11.5 67 297-363 166-247 (739)
122 KOG2025 Chromosome condensatio 53.2 2E+02 0.0043 36.6 13.6 67 202-268 119-190 (892)
123 KOG1020 Sister chromatid cohes 52.8 1.9E+02 0.0042 39.5 14.1 148 309-469 812-965 (1692)
124 PF03224 V-ATPase_H_N: V-ATPas 51.6 61 0.0013 36.8 8.8 64 51-116 60-134 (312)
125 PF05110 AF-4: AF-4 proto-onco 50.4 18 0.0004 48.1 4.8 13 78-90 27-39 (1191)
126 KOG2032 Uncharacterized conser 50.0 5.7E+02 0.012 31.4 20.7 107 9-115 255-373 (533)
127 PF10363 DUF2435: Protein of u 49.7 1.2E+02 0.0027 28.5 9.0 32 314-345 4-35 (92)
128 PF10521 DUF2454: Protein of u 49.5 1.2E+02 0.0027 34.0 10.7 121 240-360 116-271 (282)
129 KOG0915 Uncharacterized conser 49.4 6.2E+02 0.013 35.1 17.8 268 18-348 1137-1433(1702)
130 PF11701 UNC45-central: Myosin 48.8 44 0.00096 34.3 6.5 93 23-115 16-116 (157)
131 PF06483 ChiC: Chitinase C; I 48.4 55 0.0012 34.6 6.9 112 735-853 33-164 (180)
132 smart00567 EZ_HEAT E-Z type HE 47.5 26 0.00056 25.6 3.3 29 26-61 1-29 (30)
133 KOG0567 HEAT repeat-containing 47.4 33 0.00071 38.5 5.4 23 52-74 253-275 (289)
134 KOG1967 DNA repair/transcripti 46.8 1.8E+02 0.0039 37.9 12.2 146 308-465 38-199 (1030)
135 KOG0414 Chromosome condensatio 46.3 4.7E+02 0.01 35.2 15.9 209 240-468 193-432 (1251)
136 COG5116 RPN2 26S proteasome re 46.1 74 0.0016 39.1 8.4 54 408-466 599-652 (926)
137 cd03569 VHS_Hrs_Vps27p VHS dom 45.7 2.1E+02 0.0045 29.1 10.6 73 207-281 7-80 (142)
138 KOG2051 Nonsense-mediated mRNA 45.5 9E+02 0.02 32.4 22.0 45 315-360 547-591 (1128)
139 PF10274 ParcG: Parkin co-regu 43.9 43 0.00092 35.7 5.5 50 48-97 78-130 (183)
140 PF12460 MMS19_C: RNAPII trans 43.9 3E+02 0.0064 32.7 13.2 178 292-484 204-414 (415)
141 cd03567 VHS_GGA VHS domain fam 43.0 2.6E+02 0.0056 28.4 10.7 72 208-281 5-77 (139)
142 KOG1943 Beta-tubulin folding c 42.7 77 0.0017 41.6 8.3 80 5-84 334-414 (1133)
143 KOG2051 Nonsense-mediated mRNA 42.1 5.2E+02 0.011 34.5 15.2 175 293-508 442-616 (1128)
144 PF10521 DUF2454: Protein of u 41.4 1.6E+02 0.0034 33.2 9.9 73 7-79 114-203 (282)
145 PF12530 DUF3730: Protein of u 41.3 4.6E+02 0.01 28.6 13.3 123 216-341 9-150 (234)
146 PF14663 RasGEF_N_2: Rapamycin 41.2 30 0.00065 33.8 3.7 34 48-81 6-39 (115)
147 cd03561 VHS VHS domain family; 40.2 2.8E+02 0.0061 27.5 10.5 72 208-281 4-76 (133)
148 KOG1832 HIV-1 Vpr-binding prot 40.1 29 0.00063 44.3 4.0 15 256-270 676-690 (1516)
149 COG5098 Chromosome condensatio 39.7 2.3E+02 0.0049 36.0 11.2 99 399-505 938-1036(1128)
150 KOG1949 Uncharacterized conser 38.5 58 0.0012 40.9 6.1 65 13-77 175-247 (1005)
151 PF11698 V-ATPase_H_C: V-ATPas 37.3 53 0.0012 32.6 4.7 65 208-272 43-116 (119)
152 PF10274 ParcG: Parkin co-regu 37.3 1.6E+02 0.0034 31.5 8.4 50 9-59 77-126 (183)
153 PF12830 Nipped-B_C: Sister ch 37.2 1.2E+02 0.0026 32.0 7.7 78 8-89 4-84 (187)
154 PF05004 IFRD: Interferon-rela 37.2 6.9E+02 0.015 28.6 18.0 90 14-103 45-145 (309)
155 PF05536 Neurochondrin: Neuroc 37.2 5.8E+02 0.013 31.7 14.6 72 433-504 182-259 (543)
156 KOG0211 Protein phosphatase 2A 37.0 88 0.0019 40.2 7.7 101 9-115 593-699 (759)
157 PF14500 MMS19_N: Dos2-interac 37.0 4.6E+02 0.0099 29.4 12.6 68 315-391 1-70 (262)
158 PF14664 RICTOR_N: Rapamycin-i 36.8 2.4E+02 0.0052 33.2 10.8 150 245-419 4-171 (371)
159 TIGR01451 B_ant_repeat conserv 36.7 46 0.00099 28.1 3.6 31 754-788 12-42 (53)
160 PHA02664 hypothetical protein; 36.7 25 0.00054 39.9 2.5 25 336-360 244-268 (534)
161 PF11611 DUF4352: Domain of un 36.6 1.1E+02 0.0024 29.1 6.8 75 752-841 34-112 (123)
162 KOG2274 Predicted importin 9 [ 36.4 3.4E+02 0.0073 35.5 12.2 59 19-78 97-156 (1005)
163 PF04931 DNA_pol_phi: DNA poly 35.9 34 0.00075 44.0 4.0 12 349-360 391-402 (784)
164 PF14874 PapD-like: Flagellar- 35.7 2.6E+02 0.0057 25.9 9.0 74 756-854 22-99 (102)
165 KOG3723 PH domain protein Melt 35.6 1.2E+02 0.0025 37.4 7.8 234 199-459 25-297 (851)
166 PF05753 TRAP_beta: Translocon 34.8 66 0.0014 34.1 5.2 58 754-829 38-96 (181)
167 KOG1949 Uncharacterized conser 33.9 1.4E+02 0.0029 37.9 8.2 105 9-115 217-330 (1005)
168 KOG2956 CLIP-associating prote 33.9 4.3E+02 0.0094 32.2 12.0 80 258-337 303-395 (516)
169 KOG2081 Nuclear transport regu 33.9 3.4E+02 0.0074 33.6 11.4 119 328-466 367-492 (559)
170 cd06561 AlkD_like A new struct 33.6 79 0.0017 32.8 5.7 35 10-44 139-173 (197)
171 PF11935 DUF3453: Domain of un 33.0 4.6E+02 0.01 28.8 11.7 111 241-360 41-163 (239)
172 PF00790 VHS: VHS domain; Int 33.0 69 0.0015 32.1 4.9 73 207-281 8-81 (140)
173 PRK15098 beta-D-glucoside gluc 32.8 94 0.002 40.0 7.1 61 753-832 666-729 (765)
174 cd07064 AlkD_like_1 A new stru 32.6 1.1E+02 0.0023 33.0 6.6 62 14-78 117-178 (208)
175 cd03565 VHS_Tom1 VHS domain fa 32.4 2.2E+02 0.0047 28.9 8.3 73 207-281 4-78 (141)
176 PF00514 Arm: Armadillo/beta-c 32.2 67 0.0015 25.0 3.7 27 13-39 13-39 (41)
177 COG5593 Nucleic-acid-binding p 32.0 2.7E+02 0.0058 34.3 9.9 85 276-360 180-275 (821)
178 KOG1517 Guanine nucleotide bin 31.3 98 0.0021 40.7 6.6 58 22-79 610-671 (1387)
179 PF14631 FancD2: Fanconi anaem 31.1 89 0.0019 43.0 6.8 127 207-335 434-576 (1426)
180 KOG1992 Nuclear export recepto 30.9 1.4E+03 0.029 30.1 20.0 94 23-123 16-122 (960)
181 cd00197 VHS_ENTH_ANTH VHS, ENT 29.9 1.2E+02 0.0027 29.0 5.9 72 208-281 4-76 (115)
182 PF08167 RIX1: rRNA processing 29.4 1E+02 0.0023 31.8 5.6 75 208-283 67-155 (165)
183 KOG2973 Uncharacterized conser 28.5 1.9E+02 0.0041 33.4 7.7 65 14-81 5-73 (353)
184 PF06524 NOA36: NOA36 protein; 27.9 72 0.0016 35.6 4.1 11 555-565 229-239 (314)
185 PF11698 V-ATPase_H_C: V-ATPas 27.8 1.2E+02 0.0026 30.2 5.4 71 310-391 40-116 (119)
186 PF12074 DUF3554: Domain of un 27.8 1.9E+02 0.0041 33.2 7.9 100 8-107 57-210 (339)
187 PF06685 DUF1186: Protein of u 27.7 4.4E+02 0.0096 29.5 10.3 70 315-394 113-184 (249)
188 KOG2025 Chromosome condensatio 27.5 1.2E+02 0.0027 38.2 6.5 62 9-71 123-185 (892)
189 PF06524 NOA36: NOA36 protein; 27.4 60 0.0013 36.2 3.4 6 553-558 180-185 (314)
190 smart00638 LPD_N Lipoprotein N 27.3 5.9E+02 0.013 31.4 12.6 71 256-329 494-565 (574)
191 KOG2956 CLIP-associating prote 27.0 3.4E+02 0.0074 33.0 9.7 97 13-115 330-434 (516)
192 PF13981 SopA: SopA-like centr 26.8 1.5E+02 0.0033 30.1 6.0 90 411-504 25-121 (135)
193 KOG1991 Nuclear transport rece 26.7 5.9E+02 0.013 33.7 12.2 171 260-444 390-594 (1010)
194 KOG4653 Uncharacterized conser 26.6 1.6E+03 0.035 29.6 16.7 209 280-506 685-918 (982)
195 PF01345 DUF11: Domain of unkn 26.6 76 0.0017 28.1 3.5 30 754-787 41-70 (76)
196 KOG1684 Enoyl-CoA hydratase [L 26.5 2.1E+02 0.0046 33.6 7.7 65 289-360 256-321 (401)
197 KOG2236 Uncharacterized conser 26.5 68 0.0015 38.4 3.9 19 554-572 71-90 (483)
198 COG5406 Nucleosome binding fac 26.3 56 0.0012 40.4 3.3 21 21-41 39-59 (1001)
199 KOG0946 ER-Golgi vesicle-tethe 26.0 1.3E+03 0.027 30.3 14.5 131 244-398 62-203 (970)
200 KOG2062 26S proteasome regulat 25.6 59 0.0013 41.1 3.3 54 22-79 565-618 (929)
201 COG5218 YCG1 Chromosome conden 25.5 85 0.0018 38.8 4.5 61 16-80 241-301 (885)
202 PF12530 DUF3730: Protein of u 25.3 3.2E+02 0.0069 29.9 8.7 89 7-96 74-168 (234)
203 KOG2274 Predicted importin 9 [ 25.1 1.7E+03 0.037 29.5 25.5 107 9-115 446-558 (1005)
204 PF12460 MMS19_C: RNAPII trans 24.9 2.5E+02 0.0053 33.4 8.4 86 8-97 323-412 (415)
205 KOG4653 Uncharacterized conser 24.3 7.6E+02 0.017 32.4 12.4 129 214-345 738-879 (982)
206 KOG1820 Microtubule-associated 24.0 6.7E+02 0.014 32.8 12.3 192 8-285 249-458 (815)
207 PF08161 NUC173: NUC173 domain 23.7 9.3E+02 0.02 25.9 11.7 31 239-269 167-197 (198)
208 COG5406 Nucleosome binding fac 22.9 59 0.0013 40.2 2.6 11 270-280 408-418 (1001)
209 PF07571 DUF1546: Protein of u 22.9 2.7E+02 0.0058 26.2 6.5 60 22-81 16-80 (92)
210 PF07705 CARDB: CARDB; InterP 22.6 2.8E+02 0.006 25.0 6.6 55 753-831 18-72 (101)
211 PF01347 Vitellogenin_N: Lipop 22.4 59 0.0013 40.3 2.7 86 1-92 514-601 (618)
212 PF08713 DNA_alkylation: DNA a 22.3 1.3E+02 0.0028 31.7 4.8 36 9-44 152-187 (213)
213 PF03130 HEAT_PBS: PBS lyase H 22.3 67 0.0015 23.2 1.9 13 28-40 1-13 (27)
214 PF00927 Transglut_C: Transglu 22.0 83 0.0018 29.8 3.0 62 755-833 16-79 (107)
215 KOG0943 Predicted ubiquitin-pr 21.9 1.3E+02 0.0027 40.1 5.2 14 492-505 1524-1537(3015)
216 PF12765 Cohesin_HEAT: HEAT re 21.8 1.4E+02 0.0031 23.9 3.9 39 35-73 2-41 (42)
217 KOG1932 TATA binding protein a 21.7 8.4E+02 0.018 32.9 12.3 210 246-497 677-924 (1180)
218 PF04147 Nop14: Nop14-like fam 21.6 73 0.0016 41.5 3.4 26 751-776 563-588 (840)
219 PF11865 DUF3385: Domain of un 21.3 5E+02 0.011 26.8 8.8 36 6-44 8-43 (160)
220 PF05327 RRN3: RNA polymerase 21.2 4E+02 0.0087 33.1 9.5 93 202-294 67-180 (563)
221 cd05700 S1_Rrp5_repeat_hs9 S1_ 20.8 82 0.0018 27.7 2.3 17 815-831 40-57 (65)
222 KOG2959 Transcriptional regula 20.7 1.3E+02 0.0027 32.3 4.2 10 565-574 15-24 (238)
223 PF14225 MOR2-PAG1_C: Cell mor 20.6 4E+02 0.0086 30.0 8.4 79 300-391 137-218 (262)
224 PF08631 SPO22: Meiosis protei 20.5 1.2E+03 0.026 25.9 17.0 150 207-357 13-185 (278)
225 KOG1293 Proteins containing ar 20.4 4E+02 0.0086 33.6 8.8 101 15-115 422-532 (678)
No 1
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.6e-180 Score=1544.00 Aligned_cols=816 Identities=36% Similarity=0.549 Sum_probs=666.2
Q ss_pred CCcccchhhhHHHHHHHHhhcCCCChhHHHHHHHHHHHHhhcCchhhHhhHHHHHHHHhcCCChhHHHHHHHHHHHhCCC
Q 001839 1 MAGIRLHVISPLVLVAVGKCARDPSVFVRKCAANALPKLHELRQEEITSAIEEIVGILLNDRSPGVVGAAAAAFASICPN 80 (1007)
Q Consensus 1 MssIRVp~I~piv~~aIkk~~~D~SPYVRKtAA~AI~Kly~ldpe~~~~~LieiL~~LL~D~~p~VvgsAv~Af~EIcP~ 80 (1007)
|||||||+|+||+|+|||+|++|++|||||+|||||+|||+++| +++++|+++|++||+|++|.|+|+|++||.||||+
T Consensus 132 lSsIRvp~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~-e~k~qL~e~I~~LLaD~splVvgsAv~AF~evCPe 210 (968)
T KOG1060|consen 132 LSSIRVPMIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDP-EQKDQLEEVIKKLLADRSPLVVGSAVMAFEEVCPE 210 (968)
T ss_pred HHhcchhhHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCCh-hhHHHHHHHHHHHhcCCCCcchhHHHHHHHHhchh
Confidence 79999999999999999999999999999999999999999999 77889999999999999999999999999999999
Q ss_pred CccchHHHHHHHHHhCCCCChhhHHHHHHHHHHhhhhcccccchhhhhhhhhcccCCCcccccccccccccCCCCCCccc
Q 001839 81 NFTLIGRNYRNLCQILPDVEEWGQILLIEILLRYVVASHGLVKESIMSSLLCIESSHSEKDVFDVNVALEDNGIPSRTYD 160 (1007)
Q Consensus 81 rldLihk~yrkLc~~L~d~dEWgQv~iL~lL~rY~r~~~~~~kp~~~f~~~~~~~~~~~~~~~~~~~~l~~q~~~~~~~~ 160 (1007)
|++||||||||||++|+|+|||||+++|+||+|||| ++|++|+.|-... ++.+. +
T Consensus 211 rldLIHknyrklC~ll~dvdeWgQvvlI~mL~RYAR--~~l~~P~~~~~~~------------------e~n~~-----~ 265 (968)
T KOG1060|consen 211 RLDLIHKNYRKLCRLLPDVDEWGQVVLINMLTRYAR--HQLPDPTVVDSSL------------------EDNGR-----S 265 (968)
T ss_pred HHHHhhHHHHHHHhhccchhhhhHHHHHHHHHHHHH--hcCCCcccccccc------------------ccCcc-----c
Confidence 999999999999999999999999999999999985 6799987542221 11110 0
Q ss_pred hhhhhhhccccccccccccccCCCcccccccccCccccCCCCChhHHHHHHhhcccccCCChHHHHHHHHHHHhcCCHHH
Q 001839 161 SELVNLVSRSYIEGLGEYLTRSSDTNARSSDLNGARFTSGKTNDDVKLLLQCTSPLLWSHNSAVVLAAAGVHWIMSPKED 240 (1007)
Q Consensus 161 ~~~~~~~~~~~~~~~de~~~~~~~~~~~~~~~~~~~~~~~~~D~D~~lLL~~~~pLLqS~NsAVVlaaa~l~~~lap~~~ 240 (1007)
.. .++.+ + ...+++.+|+||++||++++|||||+|++||||||++|||++|+.+
T Consensus 266 ~~-----------~~~~~--------------~-~~~~P~~~d~D~~lLL~stkpLl~S~n~sVVmA~aql~y~lAP~~~ 319 (968)
T KOG1060|consen 266 CN-----------LKDKY--------------N-EIRTPYVNDPDLKLLLQSTKPLLQSRNPSVVMAVAQLFYHLAPKNQ 319 (968)
T ss_pred cc-----------ccccc--------------c-ccCCCcccCccHHHHHHhccHHHhcCCcHHHHHHHhHHHhhCCHHH
Confidence 00 00000 0 0113467999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCCCchhhHHHHHHHHHHHCCCccccccceeeeccCCCHHHHHHHHHHHHhccCCCCHHHHHHHHHH
Q 001839 241 VKRIVKPLLFILRSSGASKYVVLCNIQVFAKALPHLFVPHYEDFFVSSSDSYQSKALKLEILSSIVTESSISSVFKEFQD 320 (1007)
Q Consensus 241 l~~~~~pLv~LL~S~~eiqyvvL~~I~~i~~~~p~lF~~~l~~Ffv~~~Dp~~IK~lKLeIL~~Lane~Ni~~IL~EL~~ 320 (1007)
+..+++||+|||++++++||++|++|+.|+.++|.+|.||++.||++++||++||.+||+||++|+|++|+..||+||++
T Consensus 320 ~~~i~kaLvrLLrs~~~vqyvvL~nIa~~s~~~~~lF~P~lKsFfv~ssDp~~vk~lKleiLs~La~esni~~ILrE~q~ 399 (968)
T KOG1060|consen 320 VTKIAKALVRLLRSNREVQYVVLQNIATISIKRPTLFEPHLKSFFVRSSDPTQVKILKLEILSNLANESNISEILRELQT 399 (968)
T ss_pred HHHHHHHHHHHHhcCCcchhhhHHHHHHHHhcchhhhhhhhhceEeecCCHHHHHHHHHHHHHHHhhhccHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccCChhHHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhccccccCCCCCccchhhHHHHHHHHHHcCCchHHH--
Q 001839 321 YIRDPDRRFAADTVAAIGLCARKLPKMANTCVEGLLALIRQELLTSDIESGNGEADVLIQSIISIKSIIKQDPSCHEK-- 398 (1007)
Q Consensus 321 Yv~d~D~~fv~~aI~AIG~~A~k~p~~a~~cl~~Ll~LLs~~~~~s~~~~~~~~~~vV~EsVvvIk~Llq~~P~~~~~-- 398 (1007)
|+.+.|.+|++.||+|||+||.++-.++++||+||+.||++ .++.||.|+|++||.|||++|..|.+
T Consensus 400 YI~s~d~~faa~aV~AiGrCA~~~~sv~~tCL~gLv~Llss-----------hde~Vv~eaV~vIk~Llq~~p~~h~~ii 468 (968)
T KOG1060|consen 400 YIKSSDRSFAAAAVKAIGRCASRIGSVTDTCLNGLVQLLSS-----------HDELVVAEAVVVIKRLLQKDPAEHLEIL 468 (968)
T ss_pred HHhcCchhHHHHHHHHHHHHHHhhCchhhHHHHHHHHHHhc-----------ccchhHHHHHHHHHHHHhhChHHHHHHH
Confidence 99999999999999999999999999999999999999994 36779999999999999999999966
Q ss_pred --HHHhhhccCchhhHHhhhhhccccccCCCCccccHHHHHHHHHHhhccCcHHHHHHHHHHHHHHhhhcCCCChHHHHH
Q 001839 399 --LFRSLDSIKVPEARVMIIWMVGEYSSVGVKIPRMLTTVLKYLAWCFKSEAVETKLQILNTTIKVLLCAKGGDMWTITR 476 (1007)
Q Consensus 399 --L~~~ld~I~~p~ArAsIIWLLGEY~~~~e~ip~ia~DvLR~l~k~F~~E~~~VKlqILtlaaKL~~~~p~e~~~~i~~ 476 (1007)
|++++++|..|.|||+||||+||||. .+|.++|||||+++|+|.+|.++||+|||+++||||+.++. ++++
T Consensus 469 ~~La~lldti~vp~ARA~IiWLige~~e---~vpri~PDVLR~laksFs~E~~evKlQILnL~aKLyl~~~~----~~kl 541 (968)
T KOG1060|consen 469 FQLARLLDTILVPAARAGIIWLIGEYCE---IVPRIAPDVLRKLAKSFSDEGDEVKLQILNLSAKLYLTNID----QTKL 541 (968)
T ss_pred HHHHHHhhhhhhhhhhceeeeeehhhhh---hcchhchHHHHHHHHhhccccchhhHHHHHhhhhheEechh----hHHH
Confidence 88899999999999999999999995 58999999999999999999999999999999999999976 5889
Q ss_pred HHHHHHHHHccCCChhHHhHHHHHHHHccCCCCCCCccchhhhhccCcchHHHHHhhhcCCCCCCC-CCCCCcccccCCc
Q 001839 477 LFSYLLELAECDLNYDVRDRARFFKKLFSHNLCSQVPEETNALQENKDLPLVLVECIFRKQENLAA-SEPINDRFYLPGS 555 (1007)
Q Consensus 477 L~qyvLeLak~D~n~DVRDRArfy~~LL~~~~~~~~~~~~~~~~~~~d~~~~la~~lf~~~~p~~~-~~~~~~r~~~lGS 555 (1007)
++|||++|++||.+||+|||||||++|+.+.. .+ .++++.+|.+.+|++. ++.++.|+|++||
T Consensus 542 l~~Yv~~L~~yD~sYDiRDRaRF~r~l~~~~~---------------~L-s~h~~ei~l~~Kpa~~~es~f~~~~~~~gs 605 (968)
T KOG1060|consen 542 LVQYVFELARYDLSYDIRDRARFLRQLISPLE---------------AL-SKHAREIFLASKPAPVLESSFKDRHYQLGS 605 (968)
T ss_pred HHHHHHHHhccCCCcchhHHHHHHHHHhccHH---------------HH-HHHHHHHhhccCCCccCcccccCCCcccch
Confidence 99999999999999999999999999998731 12 5788888877766665 8899999999999
Q ss_pred HHHHhhccCCCCccCCCCCCCCCcccccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 001839 556 LSQIVLHAAPGYEPLPKPCSSLCDDLGQFSNSIDRTTALGEEWTGSSSNGTDDPDTSGSLDEESGSNYDSQQSIPGLSDN 635 (1007)
Q Consensus 556 LS~~~~~~~~gY~~LP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~se~~~~~~~s~~~~~~~~s~~~~~~~~~~~s~~ 635 (1007)
+||+++++++||+|||+|+...++..+ .+ .+++.|++++|++++..+++++++++++++++..++++
T Consensus 606 lS~lLn~~a~GY~~lp~~~~~~~d~~~------~~---~~a~~~~~~~e~~e~~~~~~~s~~~ses~~~~~~~~e~---- 672 (968)
T KOG1060|consen 606 LSLLLNAPAPGYEPLPNWPAVAPDPFP------DS---ERAKLLDSDSEEEETGDDESWSDPESESGESSNFSREG---- 672 (968)
T ss_pred HHHHhcCcCcCCccCCCccccCCCCCc------ch---hhcccccCCccccccccccCCCCCccccccCCcccccc----
Confidence 999999999999999999999887200 11 23566888888775443333233333322222111111
Q ss_pred CCCCCCCCCCCCCCCC-cccccccccccCCCCCCCCCCCCC----cccccchhcccccccCCCCCCC--C-----Cchhh
Q 001839 636 SGTGDSASEGDRNCDP-LIQISDAGIACSNENGASHSGFPD----LEGMMSKRALESWLDEQPGSSS--P-----SASEQ 703 (1007)
Q Consensus 636 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~ld~~~~~~~--~-----~~~~~ 703 (1007)
+++..++++.++++. .-+.+.++.+.++.+++++..++. +.+..+.++....+++..+.+. . .+.++
T Consensus 673 -ge~~dsn~~~~~~~d~sdqss~~~ss~~d~~s~se~e~e~~~e~~k~~pet~~~sl~l~d~~~~n~~P~~~~~~~~~l~ 751 (968)
T KOG1060|consen 673 -GEENDSNEEKDSEDDFSDQSSYEESSAEDSESSSEAESEPTPEKLKEKPETKDVSLDLNDFTPQNGKPVLPERNDPDLA 751 (968)
T ss_pred -cccccccccccccccccccchhccccccccccccccccccCCCccCCCcccccccccccccCCCCCCCCCCCCCChhhh
Confidence 100111111111000 000000000000000000000000 0110111122235555544332 1 12222
Q ss_pred h---HhhccccceeecccCc-cccCcccccccccCCCCeeEEEEecCCCCCCCCCeEEEEEEEEeCCCCceeeeEeeccc
Q 001839 704 I---QVRQSSARISIGNIGR-QVKAKSYTLLDPANGNGLKVYYSFSSEASTISPQLVCLETFFENCSSETMSEVTLVDEE 779 (1007)
Q Consensus 704 ~---~~~~s~~~~~~~~~~~-~~~~k~~~LL~~~~g~GL~v~Y~F~r~p~~~s~~mv~v~l~f~N~s~~~i~~i~i~~~~ 779 (1007)
. .+.....+.+.....+ .++.|++||||++.|+||.++|+|+|+| + |+++++|+|.++.++.+||+
T Consensus 752 ~d~~~~~~~~s~~~~~~~~p~~i~~~~~ell~~~~g~gl~~~y~f~r~~----~--~~i~~~~~n~~~~~~~~~~l---- 821 (968)
T KOG1060|consen 752 ADDEFFSLTGSRNSKPLKIPTHIEEKSIELLNEVEGSGLDLEYSFSRLP----D--VSISLHFTNKSDLELLGIHL---- 821 (968)
T ss_pred ccccccccccccccccccCCccCcchhHhhhhhcccCCcceeeeccCCC----C--eeEEEecccCCCccccccee----
Confidence 1 1222222322222223 4778999999999999999999999999 2 99999999999999999999
Q ss_pred cchhhhhhhhhhhccccccccCCCCCCcccCCcccccCCCCeeEEEEEEEcCCCCccceEEEEEcCCeeeeEEecCcccc
Q 001839 780 SHKALDLADLTLATTASSLTSQSDLPTLVPMEEITSLEPGQTMKRILEVRFHHHLLPLKLALHCNGKKLPVKLRPDIGYF 859 (1007)
Q Consensus 780 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~f~~i~~l~p~~~~~~~~~idF~~~~~~~~~~l~~~~~~~~v~i~p~vgel 859 (1007)
++|.||+ |++|.+|++|+||+++++.|||||||+||.+.|+||+.+| .|+++|||||+
T Consensus 822 --~~p~gm~------------------i~ef~~i~s~~pg~~~~~~~~i~F~dst~~~~~~l~~~~g--~~~~~~pvge~ 879 (968)
T KOG1060|consen 822 --KLPAGMS------------------IKEFSPIESLPPGASASVVLGIDFCDSTQAAEWQLLTDDG--RVRFQPPVGEL 879 (968)
T ss_pred --ecccccc------------------ccccccccccCCCcceeeeeeeeccccccceeEEEEeccC--cEEecCchhhh
Confidence 3799995 9999999999999999999999999999999999999999 99999999999
Q ss_pred cccccCCHHHHHHHhhcCCCCcccccceecccCcCcccccccchhhcchhhhhhHHHHHHHhhhcccceeeecCcccccc
Q 001839 860 IKPVPMDMETFIEMESRLPGMFEYARSCTFTDHLGEVDKDTDESSLLKDKYLVICESLASKMLSNANIFLVSVDMPVAAK 939 (1007)
Q Consensus 860 ~~p~~ms~~~f~~~~~~L~GM~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~an~~~v~~~~~~~~~ 939 (1007)
++|+.|++++|+||||+|+||||| .|.+.. ++..||++.||++
T Consensus 880 ~~~v~~~~~~~~~E~~~L~gln~~--~~~l~~-----------------------------~~~~an~~~~~~g------ 922 (968)
T KOG1060|consen 880 VQPVRMSEEDFKKERGKLGGLNEH--VIQLEN-----------------------------PNPSANVLFVPSG------ 922 (968)
T ss_pred hccccCCHHHHHhhhhhhcccchh--heeeec-----------------------------ccchhhhhcccCC------
Confidence 999999999999999999999999 444431 0558999999974
Q ss_pred cCCCCCCceeeeeccccCCceEEEEEEeccccCCCcccEEEEcccchhHHHHHHHHHHHhh
Q 001839 940 FDDASGLSLRFSSEILGNSVPCLITITVEGKCSEPLKVSAKVNCEETVFGLNLLNRIVNFL 1000 (1007)
Q Consensus 940 ~~~~~~~~~rfa~~t~~~~~~~lit~~~~~~~~~~~~~~~~vn~e~~v~g~~l~~~~~~~~ 1000 (1007)
..+||||||+|+++|||+||++ + ||+|||||||||+||||+|.++|
T Consensus 923 ------~~~rFa~~tlss~~~~llT~~~--k-------~l~ince~~ViG~~ll~~~~~~~ 968 (968)
T KOG1060|consen 923 ------SSHRFAGQTLSSKSLVLLTVDE--K-------TLEINCEKTVIGSMLLNEVSNAL 968 (968)
T ss_pred ------cceeeeeeeccCCceEEEEeeh--h-------eeEecchhhhHHHHHHHHHHhhC
Confidence 3599999999999999999998 4 78999999999999999999975
No 2
>PTZ00429 beta-adaptin; Provisional
Probab=100.00 E-value=6.1e-79 Score=736.75 Aligned_cols=443 Identities=25% Similarity=0.358 Sum_probs=382.2
Q ss_pred CCcccchhhhHHHHHHHHhhcCCCChhHHHHHHHHHHHHhhcCchh-hHhhHHHHHHHHhcCCChhHHHHHHHHHHHhC-
Q 001839 1 MAGIRLHVISPLVLVAVGKCARDPSVFVRKCAANALPKLHELRQEE-ITSAIEEIVGILLNDRSPGVVGAAAAAFASIC- 78 (1007)
Q Consensus 1 MssIRVp~I~piv~~aIkk~~~D~SPYVRKtAA~AI~Kly~ldpe~-~~~~LieiL~~LL~D~~p~VvgsAv~Af~EIc- 78 (1007)
||+||++.|+++++.+|++|+.|++|||||+||+|++|+|+++|+. ....+++.|..||.|++|+|+++|+.+|.||+
T Consensus 129 Ls~Ir~~~i~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pelv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~ 208 (746)
T PTZ00429 129 MMCIRVSSVLEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQLFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVND 208 (746)
T ss_pred HHcCCcHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcccccccchHHHHHHHhcCCCccHHHHHHHHHHHHHH
Confidence 7999999999999999999999999999999999999999999954 33457777888999999999999999999997
Q ss_pred --CCCccchHHHHHHHHHhCCCCChhhHHHHHHHHHHhhhhcccccchhhhhhhhhcccCCCcccccccccccccCCCCC
Q 001839 79 --PNNFTLIGRNYRNLCQILPDVEEWGQILLIEILLRYVVASHGLVKESIMSSLLCIESSHSEKDVFDVNVALEDNGIPS 156 (1007)
Q Consensus 79 --P~rldLihk~yrkLc~~L~d~dEWgQv~iL~lL~rY~r~~~~~~kp~~~f~~~~~~~~~~~~~~~~~~~~l~~q~~~~ 156 (1007)
|++++++|+++++||+.|.+++||+|++||++|.+|.+..
T Consensus 209 ~~~~~l~l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y~P~~-------------------------------------- 250 (746)
T PTZ00429 209 YGSEKIESSNEWVNRLVYHLPECNEWGQLYILELLAAQRPSD-------------------------------------- 250 (746)
T ss_pred hCchhhHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCC--------------------------------------
Confidence 6678999999999999999999999999999999986421
Q ss_pred CccchhhhhhhccccccccccccccCCCcccccccccCccccCCCCChhHHHHHHhhcccccCCChHHHHHHHHHHHhcC
Q 001839 157 RTYDSELVNLVSRSYIEGLGEYLTRSSDTNARSSDLNGARFTSGKTNDDVKLLLQCTSPLLWSHNSAVVLAAAGVHWIMS 236 (1007)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~de~~~~~~~~~~~~~~~~~~~~~~~~~D~D~~lLL~~~~pLLqS~NsAVVlaaa~l~~~la 236 (1007)
+.+...+|+.+.|+|||+|+||||+|+++++++.
T Consensus 251 ----------------------------------------------~~e~~~il~~l~~~Lq~~N~AVVl~Aik~il~l~ 284 (746)
T PTZ00429 251 ----------------------------------------------KESAETLLTRVLPRMSHQNPAVVMGAIKVVANLA 284 (746)
T ss_pred ----------------------------------------------cHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhc
Confidence 1234678999999999999999999999999987
Q ss_pred C---HH----HHHHHHHHHHHhhcCCCCchhhHHHHHHHHHHHCCCccccccceeeeccCCCHHHHHHHHHHHHhccCCC
Q 001839 237 P---KE----DVKRIVKPLLFILRSSGASKYVVLCNIQVFAKALPHLFVPHYEDFFVSSSDSYQSKALKLEILSSIVTES 309 (1007)
Q Consensus 237 p---~~----~l~~~~~pLv~LL~S~~eiqyvvL~~I~~i~~~~p~lF~~~l~~Ffv~~~Dp~~IK~lKLeIL~~Lane~ 309 (1007)
+ ++ .++++..||++|+++++|+||++|++|..|++.+|.+|.+|++.|||+++||.|||.+||+||+.|||++
T Consensus 285 ~~~~~~~~~~~~~rl~~pLv~L~ss~~eiqyvaLr~I~~i~~~~P~lf~~~~~~Ff~~~~Dp~yIK~~KLeIL~~Lane~ 364 (746)
T PTZ00429 285 SRCSQELIERCTVRVNTALLTLSRRDAETQYIVCKNIHALLVIFPNLLRTNLDSFYVRYSDPPFVKLEKLRLLLKLVTPS 364 (746)
T ss_pred CcCCHHHHHHHHHHHHHHHHHhhCCCccHHHHHHHHHHHHHHHCHHHHHHHHHhhhcccCCcHHHHHHHHHHHHHHcCcc
Confidence 5 22 3456779999999889999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHhhccCChhHHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhccccccCCCCCccchhhHHHHHHHHH
Q 001839 310 SISSVFKEFQDYIRDPDRRFAADTVAAIGLCARKLPKMANTCVEGLLALIRQELLTSDIESGNGEADVLIQSIISIKSII 389 (1007)
Q Consensus 310 Ni~~IL~EL~~Yv~d~D~~fv~~aI~AIG~~A~k~p~~a~~cl~~Ll~LLs~~~~~s~~~~~~~~~~vV~EsVvvIk~Ll 389 (1007)
|+..|++||++|+++.|.+|++++|+|||+||.++|..++||+++|++|++. +.+ ++.|+|++++.|+
T Consensus 365 Nv~~IL~EL~eYa~d~D~ef~r~aIrAIg~lA~k~~~~a~~cV~~Ll~ll~~-----------~~~-~v~e~i~vik~Il 432 (746)
T PTZ00429 365 VAPEILKELAEYASGVDMVFVVEVVRAIASLAIKVDSVAPDCANLLLQIVDR-----------RPE-LLPQVVTAAKDIV 432 (746)
T ss_pred cHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHhcC-----------Cch-hHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999973 223 5779999999999
Q ss_pred HcCCchH--HHHHHhh--hccCchhhHHhhhhhccccccCCCCccccHHHHHHHHHHhhccCcHHHHHHHHHHHHHHhhh
Q 001839 390 KQDPSCH--EKLFRSL--DSIKVPEARVMIIWMVGEYSSVGVKIPRMLTTVLKYLAWCFKSEAVETKLQILNTTIKVLLC 465 (1007)
Q Consensus 390 q~~P~~~--~~L~~~l--d~I~~p~ArAsIIWLLGEY~~~~e~ip~ia~DvLR~l~k~F~~E~~~VKlqILtlaaKL~~~ 465 (1007)
|+||+.+ ..|++.+ +.+.+|+||++++|||||||+. ++. ++++++.++++|..|+.+||+|+||+++|+|++
T Consensus 433 rkyP~~~il~~L~~~~~~~~i~e~~AKaaiiWILGEy~~~---I~~-a~~~L~~~i~~f~~E~~~VqlqlLta~vKlfl~ 508 (746)
T PTZ00429 433 RKYPELLMLDTLVTDYGADEVVEEEAKVSLLWMLGEYCDF---IEN-GKDIIQRFIDTIMEHEQRVQLAILSAAVKMFLR 508 (746)
T ss_pred HHCccHHHHHHHHHhhcccccccHHHHHHHHHHHHhhHhh---Hhh-HHHHHHHHHhhhccCCHHHHHHHHHHHHHHHhc
Confidence 9999976 3377654 7899999999999999999964 454 789999999999999999999999999999999
Q ss_pred cCCCChHHHHHHHHHHHHH-HccCCChhHHhHHHHHHHHccCCCCCCCccchhhhhccCcchHHHHHhh-hcCCCCCCCC
Q 001839 466 AKGGDMWTITRLFSYLLEL-AECDLNYDVRDRARFFKKLFSHNLCSQVPEETNALQENKDLPLVLVECI-FRKQENLAAS 543 (1007)
Q Consensus 466 ~p~e~~~~i~~L~qyvLeL-ak~D~n~DVRDRArfy~~LL~~~~~~~~~~~~~~~~~~~d~~~~la~~l-f~~~~p~~~~ 543 (1007)
+|++.+ .+++++|+. +++|.||||||||+|||+||+.+.. ...|+.| +.++||.+..
T Consensus 509 ~p~~~~----~~l~~vL~~~t~~~~d~DVRDRA~~Y~rLLs~~~~-----------------~~~a~~iv~~~~~~i~~~ 567 (746)
T PTZ00429 509 DPQGME----PQLNRVLETVTTHSDDPDVRDRAFAYWRLLSKGIT-----------------VAQMKKVVHGQMVPVNVD 567 (746)
T ss_pred CcHHHH----HHHHHHHHHHHhcCCChhHHHHHHHHHHHHcCCCc-----------------HHHHHHHHcCCCCCCCcc
Confidence 997543 456667754 4678999999999999999986421 1334555 4555555443
Q ss_pred CCCCcc------cccCCcHHHHhhccC
Q 001839 544 EPINDR------FYLPGSLSQIVLHAA 564 (1007)
Q Consensus 544 ~~~~~r------~~~lGSLS~~~~~~~ 564 (1007)
+.+.+. ...+||||.+.+++.
T Consensus 568 ~~~~d~~~l~~L~~~~~tlssvY~kp~ 594 (746)
T PTZ00429 568 STFSDAMTMADLKKSLNTAAIVFARPY 594 (746)
T ss_pred cccCCHHHHHHHHHhcCceeeeecCCH
Confidence 333221 234677777766554
No 3
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.3e-68 Score=624.80 Aligned_cols=440 Identities=29% Similarity=0.456 Sum_probs=389.8
Q ss_pred CCcccchhhhHHHHHHHHhhcCCCChhHHHHHHHHHHHHhhcCchh-hHhhHHHHHHHHhcCCChhHHHHHHHHHHHhC-
Q 001839 1 MAGIRLHVISPLVLVAVGKCARDPSVFVRKCAANALPKLHELRQEE-ITSAIEEIVGILLNDRSPGVVGAAAAAFASIC- 78 (1007)
Q Consensus 1 MssIRVp~I~piv~~aIkk~~~D~SPYVRKtAA~AI~Kly~ldpe~-~~~~LieiL~~LL~D~~p~VvgsAv~Af~EIc- 78 (1007)
|++|||+.|+.+.+.++++|++|.+|||||+||.++.|+|+++++. +...+.+.|..|+.|.+|+|++||+.|+.||.
T Consensus 110 m~~l~v~~i~ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e 189 (734)
T KOG1061|consen 110 MGCLRVDKITEYLCDPLLKCLKDDDPYVRKTAAVCVAKLFDIDPDLVEDSGLVDALKDLLSDSNPMVVANALAALSEIHE 189 (734)
T ss_pred eeeEeehHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhcCChhhccccchhHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 7899999999999999999999999999999999999999999954 66678999999999999999999999999996
Q ss_pred --CC--CccchHHHHHHHHHhCCCCChhhHHHHHHHHHHhhhhcccccchhhhhhhhhcccCCCcccccccccccccCCC
Q 001839 79 --PN--NFTLIGRNYRNLCQILPDVEEWGQILLIEILLRYVVASHGLVKESIMSSLLCIESSHSEKDVFDVNVALEDNGI 154 (1007)
Q Consensus 79 --P~--rldLihk~yrkLc~~L~d~dEWgQv~iL~lL~rY~r~~~~~~kp~~~f~~~~~~~~~~~~~~~~~~~~l~~q~~ 154 (1007)
|+ -..++|...++|++.|.+|+||||+.||+.|++|.+.++
T Consensus 190 ~~~~~~~~~l~~~~~~~lL~al~ec~EW~qi~IL~~l~~y~p~d~----------------------------------- 234 (734)
T KOG1061|consen 190 SHPSVNLLELNPQLINKLLEALNECTEWGQIFILDCLAEYVPKDS----------------------------------- 234 (734)
T ss_pred hCCCCCcccccHHHHHHHHHHHHHhhhhhHHHHHHHHHhcCCCCc-----------------------------------
Confidence 42 367889999999999999999999999999999975210
Q ss_pred CCCccchhhhhhhccccccccccccccCCCcccccccccCccccCCCCChhHHHHHHhhcccccCCChHHHHHHHHHHHh
Q 001839 155 PSRTYDSELVNLVSRSYIEGLGEYLTRSSDTNARSSDLNGARFTSGKTNDDVKLLLQCTSPLLWSHNSAVVLAAAGVHWI 234 (1007)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~de~~~~~~~~~~~~~~~~~~~~~~~~~D~D~~lLL~~~~pLLqS~NsAVVlaaa~l~~~ 234 (1007)
-++.-+++.+.|.|||.|+||||++.+++++
T Consensus 235 -------------------------------------------------~ea~~i~~r~~p~Lqh~n~avvlsavKv~l~ 265 (734)
T KOG1061|consen 235 -------------------------------------------------REAEDICERLTPRLQHANSAVVLSAVKVILQ 265 (734)
T ss_pred -------------------------------------------------hhHHHHHHHhhhhhccCCcceEeehHHHHHH
Confidence 1345688999999999999999999999998
Q ss_pred cCCH------HHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHHHCCCccccccceeeeccCCCHHHHHHHHHHHHhccCC
Q 001839 235 MSPK------EDVKRIVKPLLFILRSSGASKYVVLCNIQVFAKALPHLFVPHYEDFFVSSSDSYQSKALKLEILSSIVTE 308 (1007)
Q Consensus 235 lap~------~~l~~~~~pLv~LL~S~~eiqyvvL~~I~~i~~~~p~lF~~~l~~Ffv~~~Dp~~IK~lKLeIL~~Lane 308 (1007)
+.+. ..++++..||+.|+.+.++++|++|+||..+..++|++|..+++.|||+++||.|||..|||||+.||+.
T Consensus 266 ~~~~~~~~~~~~~~K~~~pl~tlls~~~e~qyvaLrNi~lil~~~p~~~~~~~~~Ff~kynDPiYvK~eKleil~~la~~ 345 (734)
T KOG1061|consen 266 LVKYLKQVNELLFKKVAPPLVTLLSSESEIQYVALRNINLILQKRPEILKVEIKVFFCKYNDPIYVKLEKLEILIELAND 345 (734)
T ss_pred HHHHHHHHHHHHHHHhcccceeeecccchhhHHHHhhHHHHHHhChHHHHhHhHeeeeecCCchhhHHHHHHHHHHHhhH
Confidence 7642 3478899999999999889999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHhhccCChhHHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhccccccCCCCCccchhhHHHHHHHH
Q 001839 309 SSISSVFKEFQDYIRDPDRRFAADTVAAIGLCARKLPKMANTCVEGLLALIRQELLTSDIESGNGEADVLIQSIISIKSI 388 (1007)
Q Consensus 309 ~Ni~~IL~EL~~Yv~d~D~~fv~~aI~AIG~~A~k~p~~a~~cl~~Ll~LLs~~~~~s~~~~~~~~~~vV~EsVvvIk~L 388 (1007)
+|+.+|+.||..|+.+.|.+|++++|||||+||.+.+++ ..|++.|++|++.. .+++|.|++++|+.|
T Consensus 346 ~nl~qvl~El~eYatevD~~fvrkaIraig~~aik~e~~-~~cv~~lLell~~~-----------~~yvvqE~~vvi~di 413 (734)
T KOG1061|consen 346 ANLAQVLAELKEYATEVDVDFVRKAVRAIGRLAIKAEQS-NDCVSILLELLETK-----------VDYVVQEAIVVIRDI 413 (734)
T ss_pred hHHHHHHHHHHHhhhhhCHHHHHHHHHHhhhhhhhhhhh-hhhHHHHHHHHhhc-----------ccceeeehhHHHHhh
Confidence 999999999999999999999999999999999999999 89999999999852 457999999999999
Q ss_pred HHcCCchHHH----HHHhhhccCchhhHHhhhhhccccccCCCCccccHHHHHHHHHHhhccCcHHHHHHHHHHHHHHhh
Q 001839 389 IKQDPSCHEK----LFRSLDSIKVPEARVMIIWMVGEYSSVGVKIPRMLTTVLKYLAWCFKSEAVETKLQILNTTIKVLL 464 (1007)
Q Consensus 389 lq~~P~~~~~----L~~~ld~I~~p~ArAsIIWLLGEY~~~~e~ip~ia~DvLR~l~k~F~~E~~~VKlqILtlaaKL~~ 464 (1007)
+|+||..++. ++..++.+++|+||+++|||+|||++ .+|+ ++++||.|.++|.+|+.+||+++||+++|+|+
T Consensus 414 lRkyP~~~~~vv~~l~~~~~sl~epeak~amiWilg~y~~---~i~~-a~elL~~f~en~~dE~~~Vql~LLta~ik~Fl 489 (734)
T KOG1061|consen 414 LRKYPNKYESVVAILCENLDSLQEPEAKAALIWILGEYAE---RIEN-ALELLESFLENFKDETAEVQLELLTAAIKLFL 489 (734)
T ss_pred hhcCCCchhhhhhhhcccccccCChHHHHHHHHHHhhhhh---ccCc-HHHHHHHHHhhcccchHHHHHHHHHHHHHHHh
Confidence 9999999876 78889999999999999999999995 4666 78999999999999999999999999999999
Q ss_pred hcCCCChHHHHHHHHHHHHHHccCC-ChhHHhHHHHHHHHccCCCCCCCccchhhhhccCcchHHHHHhhhcCCCCCCCC
Q 001839 465 CAKGGDMWTITRLFSYLLELAECDL-NYDVRDRARFFKKLFSHNLCSQVPEETNALQENKDLPLVLVECIFRKQENLAAS 543 (1007)
Q Consensus 465 ~~p~e~~~~i~~L~qyvLeLak~D~-n~DVRDRArfy~~LL~~~~~~~~~~~~~~~~~~~d~~~~la~~lf~~~~p~~~~ 543 (1007)
++|.+ .+.++|.+|.+|..|. |+|+|||+.+||++|+.+ ...|+.+..+++|....
T Consensus 490 ~~p~~----tq~~l~~vL~~~~~d~~~~dlrDr~l~Y~RlLs~~-------------------~~~a~~v~~~~kP~is~ 546 (734)
T KOG1061|consen 490 KKPTE----TQELLQGVLPLATADTDNPDLRDRGLIYWRLLSED-------------------PLIAKDVVLAEKPLISE 546 (734)
T ss_pred cCCcc----HHHHHHHHHhhhhccccChhhhhhHHHHHHHhhcC-------------------HHHHHHHHhcCCCcccc
Confidence 99985 4568888888899885 799999999999999843 24666665444444442
Q ss_pred CC--CCc----c-cccCCcHHHHhhcc
Q 001839 544 EP--IND----R-FYLPGSLSQIVLHA 563 (1007)
Q Consensus 544 ~~--~~~----r-~~~lGSLS~~~~~~ 563 (1007)
.+ ..+ + .-.+||||.+++++
T Consensus 547 ~~~~~~p~~le~l~~~i~tlssVY~Kp 573 (734)
T KOG1061|consen 547 ETDSLDPTLLEELLCDIGTLSSVYHKP 573 (734)
T ss_pred CCCCCCchHHHHHHHhhccccceeecC
Confidence 22 221 2 33489999888654
No 4
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=100.00 E-value=4.7e-55 Score=514.86 Aligned_cols=410 Identities=29% Similarity=0.440 Sum_probs=360.0
Q ss_pred CCcccchhhhHHHHHHHHhhcCCCChhHHHHHHHHHHHHhhcCchhhHhhHHHHHHHHhcCCChhHHHHHHHHHHHh-CC
Q 001839 1 MAGIRLHVISPLVLVAVGKCARDPSVFVRKCAANALPKLHELRQEEITSAIEEIVGILLNDRSPGVVGAAAAAFASI-CP 79 (1007)
Q Consensus 1 MssIRVp~I~piv~~aIkk~~~D~SPYVRKtAA~AI~Kly~ldpe~~~~~LieiL~~LL~D~~p~VvgsAv~Af~EI-cP 79 (1007)
||+|+.++++|.++.+|.+++.|++|||||+||+|+.|+|+.+|+.-...+.+.+..+|.|++|.|+++|+.++.+| ++
T Consensus 103 l~~i~~~~~~~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~~~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i~~~ 182 (526)
T PF01602_consen 103 LSNIRTPEMAEPLIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDLVEDELIPKLKQLLSDKDPSVVSAALSLLSEIKCN 182 (526)
T ss_dssp HHHH-SHHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCCHHGGHHHHHHHHTTHSSHHHHHHHHHHHHHHHCT
T ss_pred hhhhcccchhhHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHccC
Confidence 47899999999999999999999999999999999999999999432222889999999999999999999999999 98
Q ss_pred CCc--cchHHHHHHHHHhCCCCChhhHHHHHHHHHHhhhhcccccchhhhhhhhhcccCCCcccccccccccccCCCCCC
Q 001839 80 NNF--TLIGRNYRNLCQILPDVEEWGQILLIEILLRYVVASHGLVKESIMSSLLCIESSHSEKDVFDVNVALEDNGIPSR 157 (1007)
Q Consensus 80 ~rl--dLihk~yrkLc~~L~d~dEWgQv~iL~lL~rY~r~~~~~~kp~~~f~~~~~~~~~~~~~~~~~~~~l~~q~~~~~ 157 (1007)
++. .++|+.+++||+.+.+.+||+|+.+|++|.+|++... .
T Consensus 183 ~~~~~~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~-----~-------------------------------- 225 (526)
T PF01602_consen 183 DDSYKSLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEP-----E-------------------------------- 225 (526)
T ss_dssp HHHHTTHHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSH-----H--------------------------------
T ss_pred cchhhhhHHHHHHHhhhcccccchHHHHHHHHHHHhcccCCh-----h--------------------------------
Confidence 876 8999999999999999999999999999999986310 0
Q ss_pred ccchhhhhhhccccccccccccccCCCcccccccccCccccCCCCChhHHHHHHhhcccccCCChHHHHHHHHHHHhcCC
Q 001839 158 TYDSELVNLVSRSYIEGLGEYLTRSSDTNARSSDLNGARFTSGKTNDDVKLLLQCTSPLLWSHNSAVVLAAAGVHWIMSP 237 (1007)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~de~~~~~~~~~~~~~~~~~~~~~~~~~D~D~~lLL~~~~pLLqS~NsAVVlaaa~l~~~lap 237 (1007)
+++...+++.+.++|++.|++|+++|+++++++.+
T Consensus 226 ---------------------------------------------~~~~~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~ 260 (526)
T PF01602_consen 226 ---------------------------------------------DADKNRIIEPLLNLLQSSSPSVVYEAIRLIIKLSP 260 (526)
T ss_dssp ---------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred ---------------------------------------------hhhHHHHHHHHHHHhhccccHHHHHHHHHHHHhhc
Confidence 00114678889999999999999999999999988
Q ss_pred HHH-HHHHHHHHHHhhcC-CCCchhhHHHHHHHHHHHC-CCccccccceeeeccCCCHHHHHHHHHHHHhccCCCCHHHH
Q 001839 238 KED-VKRIVKPLLFILRS-SGASKYVVLCNIQVFAKAL-PHLFVPHYEDFFVSSSDSYQSKALKLEILSSIVTESSISSV 314 (1007)
Q Consensus 238 ~~~-l~~~~~pLv~LL~S-~~eiqyvvL~~I~~i~~~~-p~lF~~~l~~Ffv~~~Dp~~IK~lKLeIL~~Lane~Ni~~I 314 (1007)
... ++.++++|++||.+ ++|+||++|+.|..|+..+ +.+|.+++..|+++++|+.+||++||++|+.|++++|+..|
T Consensus 261 ~~~~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~~~~v~~~~~~~~~l~~~~d~~Ir~~~l~lL~~l~~~~n~~~I 340 (526)
T PF01602_consen 261 SPELLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSNPPAVFNQSLILFFLLYDDDPSIRKKALDLLYKLANESNVKEI 340 (526)
T ss_dssp SHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHCHHHHGTHHHHHHHHHCSSSHHHHHHHHHHHHHH--HHHHHHH
T ss_pred chHHHHhhHHHHHHHhhcccchhehhHHHHHHHhhcccchhhhhhhhhhheecCCCChhHHHHHHHHHhhcccccchhhH
Confidence 654 78999999999976 5779999999999999998 67887788889999899999999999999999999999999
Q ss_pred HHHHHHhhccC-ChhHHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhccccccCCCCCccchhhHHHHHHHHHHcCC
Q 001839 315 FKEFQDYIRDP-DRRFAADTVAAIGLCARKLPKMANTCVEGLLALIRQELLTSDIESGNGEADVLIQSIISIKSIIKQDP 393 (1007)
Q Consensus 315 L~EL~~Yv~d~-D~~fv~~aI~AIG~~A~k~p~~a~~cl~~Ll~LLs~~~~~s~~~~~~~~~~vV~EsVvvIk~Llq~~P 393 (1007)
++||..|+++. |.+++++++++|+.||.+++....||++.+++++... +..+..+++.+++++++++|
T Consensus 341 l~eL~~~l~~~~d~~~~~~~i~~I~~la~~~~~~~~~~v~~l~~ll~~~-----------~~~~~~~~~~~i~~ll~~~~ 409 (526)
T PF01602_consen 341 LDELLKYLSELSDPDFRRELIKAIGDLAEKFPPDAEWYVDTLLKLLEIS-----------GDYVSNEIINVIRDLLSNNP 409 (526)
T ss_dssp HHHHHHHHHHC--HHHHHHHHHHHHHHHHHHGSSHHHHHHHHHHHHHCT-----------GGGCHCHHHHHHHHHHHHST
T ss_pred HHHHHHHHHhccchhhhhhHHHHHHHHHhccCchHHHHHHHHHHhhhhc-----------cccccchHHHHHHHHhhcCh
Confidence 99999999655 8889999999999999999999999999999999842 34678888899999999999
Q ss_pred chHHH----HHHhhhccCchhhHHhhhhhccccccCCCCccccHHHHHHHHHHhhccCcHHHHHHHHHHHHHHhhhcCCC
Q 001839 394 SCHEK----LFRSLDSIKVPEARVMIIWMVGEYSSVGVKIPRMLTTVLKYLAWCFKSEAVETKLQILNTTIKVLLCAKGG 469 (1007)
Q Consensus 394 ~~~~~----L~~~ld~I~~p~ArAsIIWLLGEY~~~~e~ip~ia~DvLR~l~k~F~~E~~~VKlqILtlaaKL~~~~p~e 469 (1007)
+.+.. |++.++.+.+|.++++++|++|||++..+... .++++++.++++|..|+..||+++|++++|+|.+.|..
T Consensus 410 ~~~~~~l~~L~~~l~~~~~~~~~~~~~wilGEy~~~~~~~~-~~~~~~~~l~~~~~~~~~~vk~~ilt~~~Kl~~~~~~~ 488 (526)
T PF01602_consen 410 ELREKILKKLIELLEDISSPEALAAAIWILGEYGELIENTE-SAPDILRSLIENFIEESPEVKLQILTALAKLFKRNPEN 488 (526)
T ss_dssp TTHHHHHHHHHHHHTSSSSHHHHHHHHHHHHHHCHHHTTTT-HHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHSCST
T ss_pred hhhHHHHHHHHHHHHHhhHHHHHHHHHhhhcccCCcccccc-cHHHHHHHHHHhhccccHHHHHHHHHHHHHHHhhCCch
Confidence 98765 77888889999999999999999997543312 68999999999999999999999999999999999864
Q ss_pred ChHHHHHHHHHHHHHHcc-CCChhHHhHHHHHHHHccC
Q 001839 470 DMWTITRLFSYLLELAEC-DLNYDVRDRARFFKKLFSH 506 (1007)
Q Consensus 470 ~~~~i~~L~qyvLeLak~-D~n~DVRDRArfy~~LL~~ 506 (1007)
. ....++++++.++++ |.|+||||||+||++||..
T Consensus 489 ~--~~~~i~~~~~~~~~~~s~~~evr~Ra~~y~~ll~~ 524 (526)
T PF01602_consen 489 E--VQNEILQFLLSLATEDSSDPEVRDRAREYLRLLNS 524 (526)
T ss_dssp T--HHHHHHHHHHCHHHHS-SSHHHHHHHHHHHHHHHH
T ss_pred h--hHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHcc
Confidence 3 345788888888886 4699999999999999964
No 5
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=100.00 E-value=3.2e-45 Score=435.96 Aligned_cols=405 Identities=24% Similarity=0.350 Sum_probs=338.7
Q ss_pred CCcccchhhhHHHHHHHHhhcCCCChhHHHHHHHHHHHHhhcCchhhHhh-HHHHHHHHhcCCChhHHHHHHHHHHHhCC
Q 001839 1 MAGIRLHVISPLVLVAVGKCARDPSVFVRKCAANALPKLHELRQEEITSA-IEEIVGILLNDRSPGVVGAAAAAFASICP 79 (1007)
Q Consensus 1 MssIRVp~I~piv~~aIkk~~~D~SPYVRKtAA~AI~Kly~ldpe~~~~~-LieiL~~LL~D~~p~VvgsAv~Af~EIcP 79 (1007)
||.||+++++++++.+||+|++|++|||||+||+||.|+|++|++.-.+. +++++..|+.|.+|.|+++|+.+|.+|+|
T Consensus 116 ls~l~~~el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~~l~~~~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~ 195 (757)
T COG5096 116 LSLLRVKELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDKDLYHELGLIDILKELVADSDPIVIANALASLAEIDP 195 (757)
T ss_pred HHhcChHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCHhhhhcccHHHHHHHHhhCCCchHHHHHHHHHHHhch
Confidence 68999999999999999999999999999999999999999999654444 88889999999999999999999999999
Q ss_pred CCccchHHHHHHHHHhCCCCC--------hhhHHHHHHHHHHhhhhcccccchhhhhhhhhcccCCCccccccccccccc
Q 001839 80 NNFTLIGRNYRNLCQILPDVE--------EWGQILLIEILLRYVVASHGLVKESIMSSLLCIESSHSEKDVFDVNVALED 151 (1007)
Q Consensus 80 ~rldLihk~yrkLc~~L~d~d--------EWgQv~iL~lL~rY~r~~~~~~kp~~~f~~~~~~~~~~~~~~~~~~~~l~~ 151 (1007)
+ +.|++++..|..+..++ ||.+..+++.|+.|.+++
T Consensus 196 e---~a~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~le~L~~~~~~~--------------------------------- 239 (757)
T COG5096 196 E---LAHGYSLEVILRIPQLDLLSLSVSTEWLLLIILEVLTERVPTT--------------------------------- 239 (757)
T ss_pred h---hhhhHHHHHHHHhhhccchhhhhhHHHHHHHHHHHHHccCCCC---------------------------------
Confidence 9 78889999999998876 777777777777775421
Q ss_pred CCCCCCccchhhhhhhccccccccccccccCCCcccccccccCccccCCCCChhHHHHHHhhcccccCCChHHHHHHHHH
Q 001839 152 NGIPSRTYDSELVNLVSRSYIEGLGEYLTRSSDTNARSSDLNGARFTSGKTNDDVKLLLQCTSPLLWSHNSAVVLAAAGV 231 (1007)
Q Consensus 152 q~~~~~~~~~~~~~~~~~~~~~~~de~~~~~~~~~~~~~~~~~~~~~~~~~D~D~~lLL~~~~pLLqS~NsAVVlaaa~l 231 (1007)
.| ++..+..++.|.+|+.|++|++.+++.
T Consensus 240 --------------------------------------------------~~-s~~~~~~~~~~~~~~~n~~vl~~av~~ 268 (757)
T COG5096 240 --------------------------------------------------PD-SAEDFEERLSPPLQHNNAEVLLIAVKV 268 (757)
T ss_pred --------------------------------------------------CC-cHHHHHHhccchhhhCcHHHHHHHHHH
Confidence 11 335677888999999999999999999
Q ss_pred HHhcCCH----HHHHHHHHHHHHhhcCC-CCchhhHHHHHHHHHHHCCCccccccceeeeccCCCHHHHHHHHHHHHhcc
Q 001839 232 HWIMSPK----EDVKRIVKPLLFILRSS-GASKYVVLCNIQVFAKALPHLFVPHYEDFFVSSSDSYQSKALKLEILSSIV 306 (1007)
Q Consensus 232 ~~~lap~----~~l~~~~~pLv~LL~S~-~eiqyvvL~~I~~i~~~~p~lF~~~l~~Ffv~~~Dp~~IK~lKLeIL~~La 306 (1007)
.+.+.+. ........+|+.|+..+ ..++||.+.++..+...+|.+|..-.+.||+++.||.|++..|+++++.++
T Consensus 269 i~~l~~~~~~~~~~~~~~~~l~~Ll~~~~~~~~~vl~~~~~~~l~~~~k~~~~~~~~f~~~~~~~i~~~lek~~~~t~l~ 348 (757)
T COG5096 269 ILRLLVFLPSNNLFLISSPPLVTLLAKPESLIQYVLRRNIQIDLEVCSKLLDKVKKLFLIEYNDDIYIKLEKLDQLTRLA 348 (757)
T ss_pred HHHHhhhhccccHHHhhccHHHHHHcCCHHHHHHHHHHhhHHHHHhhHHHHHHHhhhhhhhccchHHHHHHHHHHHhhcC
Confidence 8877653 23556667888888776 789999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHhhcc--CChhHHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhccccccCCCCCccchhhH---
Q 001839 307 TESSISSVFKEFQDYIRD--PDRRFAADTVAAIGLCARKLPKMANTCVEGLLALIRQELLTSDIESGNGEADVLIQS--- 381 (1007)
Q Consensus 307 ne~Ni~~IL~EL~~Yv~d--~D~~fv~~aI~AIG~~A~k~p~~a~~cl~~Ll~LLs~~~~~s~~~~~~~~~~vV~Es--- 381 (1007)
+..|..+++-|+.+|+.+ .|.+++.++|++||..|.+.++....|++.++.+++. .++. ..+++.|+
T Consensus 349 ~~~n~~~~L~e~~~y~~~~~~~~e~v~~~ik~lgd~~sk~~s~~~~~I~~~lel~~g-------~~~~-~~Yi~~e~~~~ 420 (757)
T COG5096 349 DDQNLSQILLELIYYIAENHIDAEMVSEAIKALGDLASKAESSVNDCISELLELLEG-------VWIR-GSYIVQEVRIV 420 (757)
T ss_pred CchhhHHHHHHHHHHHhhccccHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhccc-------hhhc-cchhhhhhccc
Confidence 999999999999999998 8999999999999999999999999999999999871 1111 23445554
Q ss_pred --HHHHH---HHHHcCCch----HHH-HHHhhhccC----chhhHHhh-----hhhccccccCCCCccccHHHHHHHHHH
Q 001839 382 --IISIK---SIIKQDPSC----HEK-LFRSLDSIK----VPEARVMI-----IWMVGEYSSVGVKIPRMLTTVLKYLAW 442 (1007)
Q Consensus 382 --VvvIk---~Llq~~P~~----~~~-L~~~ld~I~----~p~ArAsI-----IWLLGEY~~~~e~ip~ia~DvLR~l~k 442 (1007)
|.+++ .+++.+|.. |-. +++..+.++ .|.++.+. +||+|||++ .+|+..|+++|.+..
T Consensus 421 ~~i~v~r~~~~~lr~l~~~~~~~~~~~l~~~~e~l~~~~~~P~~k~~~~~~~~~wl~ge~~~---~i~r~~~~~l~~~~~ 497 (757)
T COG5096 421 DCISVIRISVLVLRILPNEYPKILLRGLYALEETLELQSREPRAKSVTDKYLGAWLLGEFSD---IIPRLEPELLRIAIS 497 (757)
T ss_pred ceeeeeehhcchhhhcCCcchhhhHHHHHHHHHHhhccccCcHHHHHHhhhhHHHhHHHHHH---HHhhhhHHHHHHHHH
Confidence 34444 566666654 333 666667777 79988888 999999996 467888999999999
Q ss_pred hhccCcHHHHHHHHHHHHHHhhhcCCCChH----HHHHHHHHHHHHHccCCChhHHhHHHHHHHHccC
Q 001839 443 CFKSEAVETKLQILNTTIKVLLCAKGGDMW----TITRLFSYLLELAECDLNYDVRDRARFFKKLFSH 506 (1007)
Q Consensus 443 ~F~~E~~~VKlqILtlaaKL~~~~p~e~~~----~i~~L~qyvLeLak~D~n~DVRDRArfy~~LL~~ 506 (1007)
+|.+|+.+||.+||++.+|+++..+....+ .-..+.+++++ +-.++|+||||+||++++..
T Consensus 498 ~~~~E~levq~~Il~~svkl~~~~~~~~~~~~~~~d~~v~~~~~~---~v~~~DlRDra~my~~~lst 562 (757)
T COG5096 498 NFVDETLEVQYTILMSSVKLIANSIRKAKQCNSELDQDVLRRCFD---YVLVPDLRDRARMYSRLLST 562 (757)
T ss_pred HhcccchHHHHHHHHHHHHHHHhCcHhhhhccchhccHHHHHHHh---ccCChhHHHHHHHHHHHhcC
Confidence 999999999999999999999998753221 11133333333 33578999999999999984
No 6
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.6e-34 Score=335.91 Aligned_cols=449 Identities=17% Similarity=0.215 Sum_probs=330.0
Q ss_pred CcccchhhhHHHHHHHHhhcCCCChhHHHHHHHHHHHHhhcCchhhHhhHHHHHHHHhcCCChhHHHHHHHHHHHhCCCC
Q 001839 2 AGIRLHVISPLVLVAVGKCARDPSVFVRKCAANALPKLHELRQEEITSAIEEIVGILLNDRSPGVVGAAAAAFASICPNN 81 (1007)
Q Consensus 2 ssIRVp~I~piv~~aIkk~~~D~SPYVRKtAA~AI~Kly~ldpe~~~~~LieiL~~LL~D~~p~VvgsAv~Af~EIcP~r 81 (1007)
|.|--+++++-+..-|.+.+.+++|||||.|++|..|+++..| +..+.++.--.++|+|++++|+++++..+.|+|-..
T Consensus 132 g~i~s~EmardlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P-~l~e~f~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~ 210 (866)
T KOG1062|consen 132 GNICSPEMARDLAPEVERLLQHRDPYIRKKAALCAVRFIRKVP-DLVEHFVIAFRKLLCEKHHGVLIAGLHLITELCKIS 210 (866)
T ss_pred hccCCHHHhHHhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCc-hHHHHhhHHHHHHHhhcCCceeeeHHHHHHHHHhcC
Confidence 4566689999999999999999999999999999999999999 666667766788999999999999999999999664
Q ss_pred ccc---hHHHHHHHHHhCCC---------------CChhhHHHHHHHHHHhhhhcccccchhhhhhhhhcccCCCccccc
Q 001839 82 FTL---IGRNYRNLCQILPD---------------VEEWGQILLIEILLRYVVASHGLVKESIMSSLLCIESSHSEKDVF 143 (1007)
Q Consensus 82 ldL---ihk~yrkLc~~L~d---------------~dEWgQv~iL~lL~rY~r~~~~~~kp~~~f~~~~~~~~~~~~~~~ 143 (1007)
.+. ..+..+.|+.+|++ .|+|-||.||++|.-|.+.. +. .+|.+
T Consensus 211 ~~~l~~fr~l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLriLGq~d-----~d-------------aSd~M 272 (866)
T KOG1062|consen 211 PDALSYFRDLVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLRILGQND-----AD-------------ASDLM 272 (866)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHHHhcCCC-----cc-------------HHHHH
Confidence 333 33344444555543 49999999999999998532 10 00111
Q ss_pred ccccccccCCCCCCccchhhhhhhccccccccccccccCCCcccccccccCccccCCCCChhHHHHHHhhcccccCCChH
Q 001839 144 DVNVALEDNGIPSRTYDSELVNLVSRSYIEGLGEYLTRSSDTNARSSDLNGARFTSGKTNDDVKLLLQCTSPLLWSHNSA 223 (1007)
Q Consensus 144 ~~~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~de~~~~~~~~~~~~~~~~~~~~~~~~~D~D~~lLL~~~~pLLqS~NsA 223 (1007)
.++.+|. ...+.. =.+.+.|
T Consensus 273 ---~DiLaqv--------------------------------------------------------atntds-skN~GnA 292 (866)
T KOG1062|consen 273 ---NDILAQV--------------------------------------------------------ATNTDS-SKNAGNA 292 (866)
T ss_pred ---HHHHHHH--------------------------------------------------------Hhcccc-cccchhH
Confidence 0011110 011110 0234568
Q ss_pred HHHHHHHHHHhcCCHHHHH-HHHHHHHHhh-cCCCCchhhHHHHHHHHHHHCCCccccccceeeeccCCC-HHHHHHHHH
Q 001839 224 VVLAAAGVHWIMSPKEDVK-RIVKPLLFIL-RSSGASKYVVLCNIQVFAKALPHLFVPHYEDFFVSSSDS-YQSKALKLE 300 (1007)
Q Consensus 224 VVlaaa~l~~~lap~~~l~-~~~~pLv~LL-~S~~eiqyvvL~~I~~i~~~~p~lF~~~l~~Ffv~~~Dp-~~IK~lKLe 300 (1007)
+.++|+++++.+.+...+. .+++.|-++| +++.|+|||+|+.+...++..|...+.|-....-|..|| ..||++.||
T Consensus 293 ILYE~V~TI~~I~~~~~LrvlainiLgkFL~n~d~NirYvaLn~L~r~V~~d~~avqrHr~tIleCL~DpD~SIkrralE 372 (866)
T KOG1062|consen 293 ILYECVRTIMDIRSNSGLRVLAINILGKFLLNRDNNIRYVALNMLLRVVQQDPTAVQRHRSTILECLKDPDVSIKRRALE 372 (866)
T ss_pred HHHHHHHHHHhccCCchHHHHHHHHHHHHhcCCccceeeeehhhHHhhhcCCcHHHHHHHHHHHHHhcCCcHHHHHHHHH
Confidence 9999999999998876654 4678888766 568999999999999999999999999987777677787 589999999
Q ss_pred HHHhccCCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhccccccCCCCCccchhh
Q 001839 301 ILSSIVTESSISSVFKEFQDYIRDPDRRFAADTVAAIGLCARKLPKMANTCVEGLLALIRQELLTSDIESGNGEADVLIQ 380 (1007)
Q Consensus 301 IL~~Lane~Ni~~IL~EL~~Yv~d~D~~fv~~aI~AIG~~A~k~p~~a~~cl~~Ll~LLs~~~~~s~~~~~~~~~~vV~E 380 (1007)
++|.|+|++|+..+++||.+|+...|.+|+...+..|..+|.+|.+.-.|.++++++.++..+ . +|.+
T Consensus 373 Ls~~lvn~~Nv~~mv~eLl~fL~~~d~~~k~~~as~I~~laEkfaP~k~W~idtml~Vl~~aG-----------~-~V~~ 440 (866)
T KOG1062|consen 373 LSYALVNESNVRVMVKELLEFLESSDEDFKADIASKIAELAEKFAPDKRWHIDTMLKVLKTAG-----------D-FVND 440 (866)
T ss_pred HHHHHhccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhcc-----------c-ccch
Confidence 999999999999999999999999999999999999999999999999999999999998531 2 3333
Q ss_pred -HHHHHHHHHHcC-CchHHH----HHHhh--h---ccCchhhHHhhhhhccccccCCCC-------ccccHHHH---HHH
Q 001839 381 -SIISIKSIIKQD-PSCHEK----LFRSL--D---SIKVPEARVMIIWMVGEYSSVGVK-------IPRMLTTV---LKY 439 (1007)
Q Consensus 381 -sVvvIk~Llq~~-P~~~~~----L~~~l--d---~I~~p~ArAsIIWLLGEY~~~~e~-------ip~ia~Dv---LR~ 439 (1007)
.+.-+-+||.+- ++.|+. |...+ + .+..+.-...++|.||||+++.-. +-....|+ +.+
T Consensus 441 dv~~nll~LIa~~~~e~~~y~~~rLy~a~~~~~~~~is~e~l~qVa~W~IGEYGdlll~~~~~~~p~~vtesdivd~l~~ 520 (866)
T KOG1062|consen 441 DVVNNLLRLIANAFQELHEYAVLRLYLALSEDTLLDISQEPLLQVASWCIGEYGDLLLDGANEEEPIKVTESDIVDKLEK 520 (866)
T ss_pred hhHHHHHHHHhcCCcchhhHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHhhhhhHHhhcCccccCCCcCCHHHHHHHHHH
Confidence 333455566665 677765 22222 2 355555567779999999964210 11113344 444
Q ss_pred HHHhhccCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHccCCChhHHhHHHHHHHHccCCCCCCCccchhhh
Q 001839 440 LAWCFKSEAVETKLQILNTTIKVLLCAKGGDMWTITRLFSYLLELAECDLNYDVRDRARFFKKLFSHNLCSQVPEETNAL 519 (1007)
Q Consensus 440 l~k~F~~E~~~VKlqILtlaaKL~~~~p~e~~~~i~~L~qyvLeLak~D~n~DVRDRArfy~~LL~~~~~~~~~~~~~~~ 519 (1007)
+..++.. +..+|.++|++++||..+.+.. .+++++++ .--+-+.|.|+|+||.+|..|+...
T Consensus 521 v~~~~~s-~~~tk~yal~Al~KLSsr~~s~-~~ri~~lI----~~~~~s~~~elQQRa~E~~~l~~~~------------ 582 (866)
T KOG1062|consen 521 VLMSHSS-DSTTKGYALTALLKLSSRFHSS-SERIKQLI----SSYKSSLDTELQQRAVEYNALFAKD------------ 582 (866)
T ss_pred HHHhccc-hHHHHHHHHHHHHHHHhhcccc-HHHHHHHH----HHhcccccHHHHHHHHHHHHHHHHH------------
Confidence 4445443 3889999999999999998763 33454433 3345677999999999999999642
Q ss_pred hccCcchHHHHHhhhcCCCCCCCCCCCCcccccCCcHHHHhhccCCCCcc
Q 001839 520 QENKDLPLVLVECIFRKQENLAASEPINDRFYLPGSLSQIVLHAAPGYEP 569 (1007)
Q Consensus 520 ~~~~d~~~~la~~lf~~~~p~~~~~~~~~r~~~lGSLS~~~~~~~~gY~~ 569 (1007)
..+.+.|+..+|.... .+...+. =|.....+...+.+|.+
T Consensus 583 -------~~lr~siLe~mp~~e~-~~~~~~~--~g~~~~~i~~~~~p~~~ 622 (866)
T KOG1062|consen 583 -------KHLRKSILERMPSCED-ITVDARL--DGNGPAAIEQGAEPYKS 622 (866)
T ss_pred -------HHHHHHhcccCccccc-ccccccc--ccchHHHHHhccCCCcc
Confidence 3455677766665432 1222221 37777777777776655
No 7
>PF14796 AP3B1_C: Clathrin-adaptor complex-3 beta-1 subunit C-terminal
Probab=100.00 E-value=7.9e-35 Score=287.62 Aligned_cols=94 Identities=33% Similarity=0.505 Sum_probs=91.3
Q ss_pred cccCcccccccccCCCCeeEEEEecCCCCCCCCCeEEEEEEEEeCCCCceeeeEeeccccchhhhhhhhhhhcccccccc
Q 001839 721 QVKAKSYTLLDPANGNGLKVYYSFSSEASTISPQLVCLETFFENCSSETMSEVTLVDEESHKALDLADLTLATTASSLTS 800 (1007)
Q Consensus 721 ~~~~k~~~LL~~~~g~GL~v~Y~F~r~p~~~s~~mv~v~l~f~N~s~~~i~~i~i~~~~~~~~~~g~~~~~~~~~~~~~~ 800 (1007)
++++|+||||||++|+||+|+|||+||||+||++||||||+|+|+|+++|++|||++| ++++||+
T Consensus 52 ~v~~k~~eLL~~v~G~GL~v~Y~F~RqP~~~s~~mvsIql~ftN~s~~~i~~I~i~~k---~l~~g~~------------ 116 (145)
T PF14796_consen 52 FVPPKKYELLNRVNGKGLSVEYRFSRQPSLYSPSMVSIQLTFTNNSDEPIKNIHIGEK---KLPAGMR------------ 116 (145)
T ss_pred ccCcceEEeeeccCCCceeEEEEEccCCcCCCCCcEEEEEEEEecCCCeecceEECCC---CCCCCcE------------
Confidence 6899999999999999999999999999999999999999999999999999999999 4799984
Q ss_pred CCCCCCcccCCcccccCCCCeeEEEEEEEcCCCCc
Q 001839 801 QSDLPTLVPMEEITSLEPGQTMKRILEVRFHHHLL 835 (1007)
Q Consensus 801 ~~~~~~~~~f~~i~~l~p~~~~~~~~~idF~~~~~ 835 (1007)
|++|++|++|+||++++++|||||||+||
T Consensus 117 ------i~~F~~I~~L~pg~s~t~~lgIDF~DStQ 145 (145)
T PF14796_consen 117 ------IHEFPEIESLEPGASVTVSLGIDFNDSTQ 145 (145)
T ss_pred ------eeccCcccccCCCCeEEEEEEEecccCCC
Confidence 99999999999999999999999999998
No 8
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=6.1e-33 Score=319.10 Aligned_cols=426 Identities=16% Similarity=0.210 Sum_probs=321.6
Q ss_pred hhhhHHHHHHHHhhc--CCCChhHHHHHHHHHHHHhhcCchh-hHhhHHHHHHHHhcCCChhHHHHHHHHHHHhC---CC
Q 001839 7 HVISPLVLVAVGKCA--RDPSVFVRKCAANALPKLHELRQEE-ITSAIEEIVGILLNDRSPGVVGAAAAAFASIC---PN 80 (1007)
Q Consensus 7 p~I~piv~~aIkk~~--~D~SPYVRKtAA~AI~Kly~ldpe~-~~~~LieiL~~LL~D~~p~VvgsAv~Af~EIc---P~ 80 (1007)
.++.+-+-.-|.|.+ .+..+||||.||+|+.+||+-.||. ..+.+.+.+-.||+|.+-.|+.||...+.-+| |+
T Consensus 141 re~~ea~~~DI~KlLvS~~~~~~vkqkaALclL~L~r~spDl~~~~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~ 220 (938)
T KOG1077|consen 141 REMAEAFADDIPKLLVSGSSMDYVKQKAALCLLRLFRKSPDLVNPGEWAQRIVHLLDDQHMGVVTAATSLIEALVKKNPE 220 (938)
T ss_pred HhHHHHhhhhhHHHHhCCcchHHHHHHHHHHHHHHHhcCccccChhhHHHHHHHHhCccccceeeehHHHHHHHHHcCCH
Confidence 344444445555554 4678999999999999999999954 55578888889999999999999988888776 33
Q ss_pred Cc-cchHHHHHHHHHhCCC-------------CChhhHHHHHHHHHHhhhhcccccchhhhhhhhhcccCCCcccccccc
Q 001839 81 NF-TLIGRNYRNLCQILPD-------------VEEWGQILLIEILLRYVVASHGLVKESIMSSLLCIESSHSEKDVFDVN 146 (1007)
Q Consensus 81 rl-dLihk~yrkLc~~L~d-------------~dEWgQv~iL~lL~rY~r~~~~~~kp~~~f~~~~~~~~~~~~~~~~~~ 146 (1007)
.+ .-+.++..+|.++... -.+|-|+.++++|..|-+.+ ||.. + ...
T Consensus 221 ~yk~~~~~avs~L~riv~~~~t~~qdYTyy~vP~PWL~vKl~rlLq~~p~~~----D~~~------r----------~~l 280 (938)
T KOG1077|consen 221 SYKTCLPLAVSRLSRIVVVVGTSLQDYTYYFVPAPWLQVKLLRLLQIYPTPE----DPST------R----------ARL 280 (938)
T ss_pred HHhhhHHHHHHHHHHHHhhcccchhhceeecCCChHHHHHHHHHHHhCCCCC----CchH------H----------HHH
Confidence 32 2244555555555422 38999999999999994321 0100 0 000
Q ss_pred cccccCCCCCCccchhhhhhhccccccccccccccCCCcccccccccCccccCCCCChhHHHHHHhhc-----ccccCCC
Q 001839 147 VALEDNGIPSRTYDSELVNLVSRSYIEGLGEYLTRSSDTNARSSDLNGARFTSGKTNDDVKLLLQCTS-----PLLWSHN 221 (1007)
Q Consensus 147 ~~l~~q~~~~~~~~~~~~~~~~~~~~~~~de~~~~~~~~~~~~~~~~~~~~~~~~~D~D~~lLL~~~~-----pLLqS~N 221 (1007)
+ .=+..+|+... .-.|++|
T Consensus 281 ~--------------------------------------------------------evl~~iLnk~~~~~~~k~vq~~n 304 (938)
T KOG1077|consen 281 N--------------------------------------------------------EVLERILNKAQEPPKSKKVQHSN 304 (938)
T ss_pred H--------------------------------------------------------HHHHHHHhccccCccccchHhhh
Confidence 0 00001111111 1124556
Q ss_pred --hHHHHHHHHHHHhcCC-HHHHHHHHHHHHHhhcC-CCCchhhHHHHHHHHHHHCC--Cccccccceeeec-cCCC-HH
Q 001839 222 --SAVVLAAAGVHWIMSP-KEDVKRIVKPLLFILRS-SGASKYVVLCNIQVFAKALP--HLFVPHYEDFFVS-SSDS-YQ 293 (1007)
Q Consensus 222 --sAVVlaaa~l~~~lap-~~~l~~~~~pLv~LL~S-~~eiqyvvL~~I~~i~~~~p--~lF~~~l~~Ffv~-~~Dp-~~ 293 (1007)
.||.++++++.+|+.+ ++.+.++++.|..+|.. .+|+||++|.++..|+..-+ +....|....+-. .+++ ..
T Consensus 305 a~naVLFeaI~l~~h~D~e~~ll~~~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss~~s~davK~h~d~Ii~sLkterDvS 384 (938)
T KOG1077|consen 305 AKNAVLFEAISLAIHLDSEPELLSRAVNQLGQFLSHRETNIRYLALESMCKLASSEFSIDAVKKHQDTIINSLKTERDVS 384 (938)
T ss_pred hHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHhccchHHHHHHHHHHHHHHhccccchH
Confidence 4899999999999987 56789999999999975 79999999999999987654 3445565444432 3353 57
Q ss_pred HHHHHHHHHHhccCCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhccccccCCCC
Q 001839 294 SKALKLEILSSIVTESSISSVFKEFQDYIRDPDRRFAADTVAAIGLCARKLPKMANTCVEGLLALIRQELLTSDIESGNG 373 (1007)
Q Consensus 294 IK~lKLeIL~~Lane~Ni~~IL~EL~~Yv~d~D~~fv~~aI~AIG~~A~k~p~~a~~cl~~Ll~LLs~~~~~s~~~~~~~ 373 (1007)
||++.+|+||.+|+.+|++.|+.||..|+...|..+..+.+-.++.+|+++.....|++++.++|++..+ ++ +.
T Consensus 385 irrravDLLY~mcD~~Nak~IV~elLqYL~tAd~sireeivlKvAILaEKyAtDy~WyVdviLqLiriag-----d~-vs 458 (938)
T KOG1077|consen 385 IRRRAVDLLYAMCDVSNAKQIVAELLQYLETADYSIREEIVLKVAILAEKYATDYSWYVDVILQLIRIAG-----DY-VS 458 (938)
T ss_pred HHHHHHHHHHHHhchhhHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhc-----cc-cc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999642 12 11
Q ss_pred CccchhhHHHHHHHHHHcCCchHHHHHH-hhhccCchhhHHhhh----hhccccccCCCCccccH-HHHHHHHHHhhccC
Q 001839 374 EADVLIQSIISIKSIIKQDPSCHEKLFR-SLDSIKVPEARVMII----WMVGEYSSVGVKIPRML-TTVLKYLAWCFKSE 447 (1007)
Q Consensus 374 ~~~vV~EsVvvIk~Llq~~P~~~~~L~~-~ld~I~~p~ArAsII----WLLGEY~~~~e~ip~ia-~DvLR~l~k~F~~E 447 (1007)
+ -||. ++.+|+.++|+.|...|+ .+++++.|.+..+|+ +|+|||++++..-|.+. ...|..+..+|...
T Consensus 459 d--eVW~---RvvQiVvNnedlq~yaak~~fe~Lq~~a~hE~mVKvggyiLGEfg~LIa~~prss~~~qFsllh~K~~~~ 533 (938)
T KOG1077|consen 459 D--EVWY---RVVQIVVNNEDLQGYAAKRLFEYLQKPACHENMVKVGGYILGEFGNLIADDPRSSPAVQFSLLHEKLHLC 533 (938)
T ss_pred H--HHHH---HhheeEecchhhhHHHHHHHHHHHhhhHHHHHHHHhhhhhhhhhhhhhcCCCCCChHHHHHHHHHHhccC
Confidence 2 3676 456888999999988665 668888888888775 99999999876655554 45588999999999
Q ss_pred cHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHccCCChhHHhHHHHHHHHccCCCCCCCccchhhhhccCcchH
Q 001839 448 AVETKLQILNTTIKVLLCAKGGDMWTITRLFSYLLELAECDLNYDVRDRARFFKKLFSHNLCSQVPEETNALQENKDLPL 527 (1007)
Q Consensus 448 ~~~VKlqILtlaaKL~~~~p~e~~~~i~~L~qyvLeLak~D~n~DVRDRArfy~~LL~~~~~~~~~~~~~~~~~~~d~~~ 527 (1007)
+..+|..+|++.+|++-..|+ ++.-++.||.+...-.|+++|+||.+|.+|..... .|
T Consensus 534 s~~tr~lLLtTyiKl~nl~PE-----i~~~v~~vFq~~~n~~D~ElQqRa~EYLql~k~as--------------~d--- 591 (938)
T KOG1077|consen 534 SPVTRALLLTTYIKLINLFPE-----IKSNVQKVFQLYSNLIDVELQQRAVEYLQLSKLAS--------------TD--- 591 (938)
T ss_pred ChhHHHHHHHHHHHHHhhChh-----hhHHHHHHHHhhcccCCHHHHHHHHHHHHHHHhcc--------------ch---
Confidence 999999999999999999985 34445556666555579999999999999987631 12
Q ss_pred HHHHhhhcCCCCCCC
Q 001839 528 VLVECIFRKQENLAA 542 (1007)
Q Consensus 528 ~la~~lf~~~~p~~~ 542 (1007)
....+|.++|||+.
T Consensus 592 -vL~~vleeMPpF~e 605 (938)
T KOG1077|consen 592 -VLQTVLEEMPPFPE 605 (938)
T ss_pred -HHHHHHhhCCCCcc
Confidence 22356889999986
No 9
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=9.5e-26 Score=261.94 Aligned_cols=321 Identities=18% Similarity=0.308 Sum_probs=264.9
Q ss_pred CCcccchhhhHHHHHHHHhhcCCCChhHHHHHHHHHHHHhhcCchh--hHhhHHHHHHHHhcCCChhHHHHHHHHHHHhC
Q 001839 1 MAGIRLHVISPLVLVAVGKCARDPSVFVRKCAANALPKLHELRQEE--ITSAIEEIVGILLNDRSPGVVGAAAAAFASIC 78 (1007)
Q Consensus 1 MssIRVp~I~piv~~aIkk~~~D~SPYVRKtAA~AI~Kly~ldpe~--~~~~LieiL~~LL~D~~p~VvgsAv~Af~EIc 78 (1007)
+|.+|-|++++.+|++|+.|+.++++||||.|.+||.-+|+..... +.++|++ ..|+.+.||.+..+|++.+..+-
T Consensus 123 LckLkE~ELlepl~p~IracleHrhsYVRrNAilaifsIyk~~~~L~pDapeLi~--~fL~~e~DpsCkRNAFi~L~~~D 200 (948)
T KOG1058|consen 123 LCKLKEPELLEPLMPSIRACLEHRHSYVRRNAILAIFSIYKNFEHLIPDAPELIE--SFLLTEQDPSCKRNAFLMLFTTD 200 (948)
T ss_pred hhhcCcHHHhhhhHHHHHHHHhCcchhhhhhhheeehhHHhhhhhhcCChHHHHH--HHHHhccCchhHHHHHHHHHhcC
Confidence 4778999999999999999999999999999999999999873211 3455555 45788999999999999999999
Q ss_pred CCCccchHHHHHHHHHhCCCCChhh---HHHHHHHHHHhhhhcccccchhhhhhhhhcccCCCcccccccccccccCCCC
Q 001839 79 PNNFTLIGRNYRNLCQILPDVEEWG---QILLIEILLRYVVASHGLVKESIMSSLLCIESSHSEKDVFDVNVALEDNGIP 155 (1007)
Q Consensus 79 P~rldLihk~yrkLc~~L~d~dEWg---Qv~iL~lL~rY~r~~~~~~kp~~~f~~~~~~~~~~~~~~~~~~~~l~~q~~~ 155 (1007)
|+| +..+|...+.++..|| |.+|++++..-|.+. |.
T Consensus 201 ~Er------Al~Yl~~~idqi~~~~~~LqlViVE~Irkv~~~~-----p~------------------------------ 239 (948)
T KOG1058|consen 201 PER------ALNYLLSNIDQIPSFNDSLQLVIVELIRKVCLAN-----PA------------------------------ 239 (948)
T ss_pred HHH------HHHHHHhhHhhccCccHHHHHHHHHHHHHHHhcC-----HH------------------------------
Confidence 997 5667887777777666 899999887765311 00
Q ss_pred CCccchhhhhhhccccccccccccccCCCcccccccccCccccCCCCChhHHHHHHhhcccccCCChHHHHHHHHHHHhc
Q 001839 156 SRTYDSELVNLVSRSYIEGLGEYLTRSSDTNARSSDLNGARFTSGKTNDDVKLLLQCTSPLLWSHNSAVVLAAAGVHWIM 235 (1007)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~de~~~~~~~~~~~~~~~~~~~~~~~~~D~D~~lLL~~~~pLLqS~NsAVVlaaa~l~~~l 235 (1007)
.-..+++++..+|+|.++||+++|+-....+
T Consensus 240 -------------------------------------------------~~~~~i~~i~~lL~stssaV~fEaa~tlv~l 270 (948)
T KOG1058|consen 240 -------------------------------------------------EKARYIRCIYNLLSSTSSAVIFEAAGTLVTL 270 (948)
T ss_pred -------------------------------------------------HhhHHHHHHHHHHhcCCchhhhhhcceEEEc
Confidence 0135789999999999999999999988888
Q ss_pred CC-HHHHHHHHHHHHHhhc--CCCCchhhHHHHHHHHHHHCCCccccccceee-eccCCCHHHHHHHHHHHHhccCCCCH
Q 001839 236 SP-KEDVKRIVKPLLFILR--SSGASKYVVLCNIQVFAKALPHLFVPHYEDFF-VSSSDSYQSKALKLEILSSIVTESSI 311 (1007)
Q Consensus 236 ap-~~~l~~~~~pLv~LL~--S~~eiqyvvL~~I~~i~~~~p~lF~~~l~~Ff-v~~~Dp~~IK~lKLeIL~~Lane~Ni 311 (1007)
.+ +..++.++..+++|+- ++.|++.++|+.|..+...+.++|+.+..+|. +...-...++++.|+|...|++..|+
T Consensus 271 S~~p~alk~Aa~~~i~l~~kesdnnvklIvldrl~~l~~~~~~il~~l~mDvLrvLss~dldvr~Ktldi~ldLvssrNv 350 (948)
T KOG1058|consen 271 SNDPTALKAAASTYIDLLVKESDNNVKLIVLDRLSELKALHEKILQGLIMDVLRVLSSPDLDVRSKTLDIALDLVSSRNV 350 (948)
T ss_pred cCCHHHHHHHHHHHHHHHHhccCcchhhhhHHHHHHHhhhhHHHHHHHHHHHHHHcCcccccHHHHHHHHHHhhhhhccH
Confidence 75 6789999999999984 57899999999999999888899999887766 33333468999999999999999999
Q ss_pred HHHHHHHHHhhcc-----C--ChhHHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhccccccCCCCCccchhhHHHH
Q 001839 312 SSVFKEFQDYIRD-----P--DRRFAADTVAAIGLCARKLPKMANTCVEGLLALIRQELLTSDIESGNGEADVLIQSIIS 384 (1007)
Q Consensus 312 ~~IL~EL~~Yv~d-----~--D~~fv~~aI~AIG~~A~k~p~~a~~cl~~Ll~LLs~~~~~s~~~~~~~~~~vV~EsVvv 384 (1007)
.+|+.-|+.-+.. . +..+.+..|++|..||.+||+++..++..|+++|+. .++.....++..
T Consensus 351 ediv~~Lkke~~kT~~~e~d~~~~yRqlLiktih~cav~Fp~~aatvV~~ll~fisD-----------~N~~aas~vl~F 419 (948)
T KOG1058|consen 351 EDIVQFLKKEVMKTHNEESDDNGKYRQLLIKTIHACAVKFPEVAATVVSLLLDFISD-----------SNEAAASDVLMF 419 (948)
T ss_pred HHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHhcc-----------CCHHHHHHHHHH
Confidence 9999977764421 1 226899999999999999999999999999999983 122234445678
Q ss_pred HHHHHHcCCchHHH----HHHhhhccCchhhHHhhhhhcccccc
Q 001839 385 IKSIIKQDPSCHEK----LFRSLDSIKVPEARVMIIWMVGEYSS 424 (1007)
Q Consensus 385 Ik~Llq~~P~~~~~----L~~~ld~I~~p~ArAsIIWLLGEY~~ 424 (1007)
++..++++|+.... |.+.+..|..+.+-.+.+|++||||.
T Consensus 420 vrE~iek~p~Lr~~ii~~l~~~~~~irS~ki~rgalwi~GeYce 463 (948)
T KOG1058|consen 420 VREAIEKFPNLRASIIEKLLETFPQIRSSKICRGALWILGEYCE 463 (948)
T ss_pred HHHHHHhCchHHHHHHHHHHHhhhhhcccccchhHHHHHHHHHh
Confidence 99999999987654 66777888888888899999999995
No 10
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.84 E-value=8.1e-19 Score=204.34 Aligned_cols=402 Identities=18% Similarity=0.230 Sum_probs=274.3
Q ss_pred CcccchhhhHHHHHHHHhhcCCCChhHHHHHHHHHHHHhhcCchhhHhhHHHHHHHHhcCCChhHHHHHHHHHHHhC---
Q 001839 2 AGIRLHVISPLVLVAVGKCARDPSVFVRKCAANALPKLHELRQEEITSAIEEIVGILLNDRSPGVVGAAAAAFASIC--- 78 (1007)
Q Consensus 2 ssIRVp~I~piv~~aIkk~~~D~SPYVRKtAA~AI~Kly~ldpe~~~~~LieiL~~LL~D~~p~VvgsAv~Af~EIc--- 78 (1007)
|+|=-|.+.-=+-.-|-..++..-|||||.|+..+.|+|-..|+.-++.+-.+.+ -|.|.||.|++|||.++.|+.
T Consensus 134 S~fvTpdLARDLa~Dv~tLL~sskpYvRKkAIl~lykvFLkYPeAlr~~FprL~E-kLeDpDp~V~SAAV~VICELArKn 212 (877)
T KOG1059|consen 134 SCIVTPDLARDLADDVFTLLNSSKPYVRKKAILLLYKVFLKYPEALRPCFPRLVE-KLEDPDPSVVSAAVSVICELARKN 212 (877)
T ss_pred ccccCchhhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhhHhHhhhHHHHHH-hccCCCchHHHHHHHHHHHHHhhC
Confidence 4455566666667778889999999999999999999999999656666665544 588999999999999999995
Q ss_pred CCCccchHHHHHHHHHhCCCCChhhHHHHHHHHHHhhhhcccccchhhhhhhhhcccCCCcccccccccccccCCCCCCc
Q 001839 79 PNNFTLIGRNYRNLCQILPDVEEWGQILLIEILLRYVVASHGLVKESIMSSLLCIESSHSEKDVFDVNVALEDNGIPSRT 158 (1007)
Q Consensus 79 P~rldLihk~yrkLc~~L~d~dEWgQv~iL~lL~rY~r~~~~~~kp~~~f~~~~~~~~~~~~~~~~~~~~l~~q~~~~~~ 158 (1007)
|.++--+.|.|.+|+- ..-+-|--+.||.++...++-. |- |.
T Consensus 213 PknyL~LAP~ffkllt--tSsNNWmLIKiiKLF~aLtplE-----PR-----------------------Lg-------- 254 (877)
T KOG1059|consen 213 PQNYLQLAPLFYKLLV--TSSNNWVLIKLLKLFAALTPLE-----PR-----------------------LG-------- 254 (877)
T ss_pred CcccccccHHHHHHHh--ccCCCeehHHHHHHHhhccccC-----ch-----------------------hh--------
Confidence 7776667788888855 5679999888888877765311 00 00
Q ss_pred cchhhhhhhccccccccccccccCCCcccccccccCccccCCCCChhHHHHHHhhcccccCCCh-HHHHHHHHHHHhc--
Q 001839 159 YDSELVNLVSRSYIEGLGEYLTRSSDTNARSSDLNGARFTSGKTNDDVKLLLQCTSPLLWSHNS-AVVLAAAGVHWIM-- 235 (1007)
Q Consensus 159 ~~~~~~~~~~~~~~~~~de~~~~~~~~~~~~~~~~~~~~~~~~~D~D~~lLL~~~~pLLqS~Ns-AVVlaaa~l~~~l-- 235 (1007)
.-||..+..|+.|..+ +++++|+++....
T Consensus 255 ------------------------------------------------KKLieplt~li~sT~AmSLlYECvNTVVa~s~ 286 (877)
T KOG1059|consen 255 ------------------------------------------------KKLIEPITELMESTVAMSLLYECVNTVVAVSM 286 (877)
T ss_pred ------------------------------------------------hhhhhHHHHHHHhhHHHHHHHHHHHHheeehh
Confidence 0122333333333333 4788888886543
Q ss_pred ---CC--HHHHHHHHHHHHHhh-cCCCCchhhHHHHHHHHHHHCCCccccccceeeeccCC-CHHHHHHHHHHHHhccCC
Q 001839 236 ---SP--KEDVKRIVKPLLFIL-RSSGASKYVVLCNIQVFAKALPHLFVPHYEDFFVSSSD-SYQSKALKLEILSSIVTE 308 (1007)
Q Consensus 236 ---ap--~~~l~~~~~pLv~LL-~S~~eiqyvvL~~I~~i~~~~p~lF~~~l~~Ffv~~~D-p~~IK~lKLeIL~~Lane 308 (1007)
.| ...++-++.-|-.|+ .+++|.+|+.|-.+.+|...+|...+.|-....-+.+| ...||...|++|+-++++
T Consensus 287 s~g~~d~~asiqLCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~Vqa~kdlIlrcL~DkD~SIRlrALdLl~gmVsk 366 (877)
T KOG1059|consen 287 SSGMSDHSASIQLCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKAVQAHKDLILRCLDDKDESIRLRALDLLYGMVSK 366 (877)
T ss_pred ccCCCCcHHHHHHHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHHHHHhHHHHHHHhccCCchhHHHHHHHHHHHhhh
Confidence 12 245677777776666 56899999999999999999999999997655544444 578999999999999999
Q ss_pred CCHHHHHHHHHHhhccCCh-hHHHHHH-HHHHHHHHh-CcccH--HHHHHHHHHHHHhhhccccccCCCCCccchhhHHH
Q 001839 309 SSISSVFKEFQDYIRDPDR-RFAADTV-AAIGLCARK-LPKMA--NTCVEGLLALIRQELLTSDIESGNGEADVLIQSII 383 (1007)
Q Consensus 309 ~Ni~~IL~EL~~Yv~d~D~-~fv~~aI-~AIG~~A~k-~p~~a--~~cl~~Ll~LLs~~~~~s~~~~~~~~~~vV~EsVv 383 (1007)
.|+..|++-|..|+-..+. .+.-+.+ +-|+.|+.. +.-++ +|++.+|++|...++.. .+ ..+.+
T Consensus 367 kNl~eIVk~LM~~~~~ae~t~yrdell~~II~iCS~snY~~ItdFEWYlsVlveLa~l~~~~-------~G-~~I~e--- 435 (877)
T KOG1059|consen 367 KNLMEIVKTLMKHVEKAEGTNYRDELLTRIISICSQSNYQYITDFEWYLSVLVELARLEGTR-------HG-SLIAE--- 435 (877)
T ss_pred hhHHHHHHHHHHHHHhccchhHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHhccccc-------hh-hHHHH---
Confidence 9999999999999977665 5666554 456677653 33333 59999999998865311 11 12333
Q ss_pred HHHHHHHcCCchHHH----HHHhhh------c----cCchhhHHhhhhhccccccCCCCccccHHHHHHHHHH-hhccCc
Q 001839 384 SIKSIIKQDPSCHEK----LFRSLD------S----IKVPEARVMIIWMVGEYSSVGVKIPRMLTTVLKYLAW-CFKSEA 448 (1007)
Q Consensus 384 vIk~Llq~~P~~~~~----L~~~ld------~----I~~p~ArAsIIWLLGEY~~~~e~ip~ia~DvLR~l~k-~F~~E~ 448 (1007)
.|.++-.+-|....- +..+++ . -+-+...-+.+|++|||+...+. ..+++..|.+ ++..-+
T Consensus 436 Qi~Dv~iRV~~iR~fsV~~m~~Ll~~~~~~~s~q~n~~l~eVL~AaaWi~GEyse~ven----~~~~leamlrpr~~~lp 511 (877)
T KOG1059|consen 436 QIIDVAIRVPSIRPFSVSQMSALLDDPLLAGSAQINSQLCEVLYAAAWILGEYSEFVEN----PNDTLEAMLRPRSDLLP 511 (877)
T ss_pred HHHHHheechhhhHhHHHHHHHHHhchhhccchhhccchhHHHHHHHHHHHHHHHHhhC----HHHHHHHHhcCccccCc
Confidence 233333333333221 333333 1 11234455678999999965432 3577887776 444667
Q ss_pred HHHHHHHHHHHHHHhhhc-----CCCChHHHHHHHHHHH---HHHccCCChhHHhHHHHHHHHcc
Q 001839 449 VETKLQILNTTIKVLLCA-----KGGDMWTITRLFSYLL---ELAECDLNYDVRDRARFFKKLFS 505 (1007)
Q Consensus 449 ~~VKlqILtlaaKL~~~~-----p~e~~~~i~~L~qyvL---eLak~D~n~DVRDRArfy~~LL~ 505 (1007)
.-++.-.+..++|+|..- |..+.+-+-.|.+.++ +.-.+..+.+||.||-....|+.
T Consensus 512 ~~iq~vyvqni~Klfc~~~~~~ee~~~~e~~~sL~~~i~~~l~qf~~s~d~EvQERA~~~~~li~ 576 (877)
T KOG1059|consen 512 GHIQAVYVQNIVKLFCSWCSQFEETKDFEGIVSLVNLILSFLEQFSGSSDLEVQERASEVLELIR 576 (877)
T ss_pred hHHHHHHHHHHHHHHHHHHhhcCcccchhHHHHHHHHHHHHhhcccCccchhHHHHHHHHHHHHH
Confidence 788888999999998753 2222222323333333 23345679999999555544443
No 11
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.65 E-value=3.3e-14 Score=168.03 Aligned_cols=278 Identities=19% Similarity=0.217 Sum_probs=219.2
Q ss_pred HHhhcccccCCChHHHHHHHHHHHhcCC--HHHHHHHHHHHHHhhcCC-CCchhhHHHHHHHHHHHCCCccccccceeee
Q 001839 210 LQCTSPLLWSHNSAVVLAAAGVHWIMSP--KEDVKRIVKPLLFILRSS-GASKYVVLCNIQVFAKALPHLFVPHYEDFFV 286 (1007)
Q Consensus 210 L~~~~pLLqS~NsAVVlaaa~l~~~lap--~~~l~~~~~pLv~LL~S~-~eiqyvvL~~I~~i~~~~p~lF~~~l~~Ffv 286 (1007)
.+-+..+|.|..-.|++++|+....+.. ...+..++..|-.++.++ .-.||.+++.|.+++..+|....-.-...--
T Consensus 247 ~~fl~s~l~~K~emV~~EaArai~~l~~~~~r~l~pavs~Lq~flssp~~~lRfaAvRtLnkvAm~~P~~v~~cN~elE~ 326 (865)
T KOG1078|consen 247 FPFLESCLRHKSEMVIYEAARAIVSLPNTNSRELAPAVSVLQLFLSSPKVALRFAAVRTLNKVAMKHPQAVTVCNLDLES 326 (865)
T ss_pred HHHHHHHHhchhHHHHHHHHHHHhhccccCHhhcchHHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCccccccchhHHh
Confidence 3344556788899999999999877653 345666777777777774 6789999999999999999765443222222
Q ss_pred ccCCC-HHHHHHHHHHHHhccCCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhcc
Q 001839 287 SSSDS-YQSKALKLEILSSIVTESSISSVFKEFQDYIRDPDRRFAADTVAAIGLCARKLPKMANTCVEGLLALIRQELLT 365 (1007)
Q Consensus 287 ~~~Dp-~~IK~lKLeIL~~Lane~Ni~~IL~EL~~Yv~d~D~~fv~~aI~AIG~~A~k~p~~a~~cl~~Ll~LLs~~~~~ 365 (1007)
+-+|+ ..|..+++-.|++-.++.|+..+++.+-.++.+.+.+|+.-.|+||..+..++|..-...++.|-.+|.+++
T Consensus 327 lItd~NrsIat~AITtLLKTG~e~sv~rLm~qI~~fv~disDeFKivvvdai~sLc~~fp~k~~~~m~FL~~~Lr~eG-- 404 (865)
T KOG1078|consen 327 LITDSNRSIATLAITTLLKTGTESSVDRLMKQISSFVSDISDEFKIVVVDAIRSLCLKFPRKHTVMMNFLSNMLREEG-- 404 (865)
T ss_pred hhcccccchhHHHHHHHHHhcchhHHHHHHHHHHHHHHhccccceEEeHHHHHHHHhhccHHHHHHHHHHHHHHHhcc--
Confidence 34665 589999999999999999999999999999999999999999999999999999999999999999998742
Q ss_pred ccccCCCCCccchhhHHHHHHHHHHcCCchHHH----HHHhhhccCchhhHHhhhhhccccccCCCCccccHHHHHHHHH
Q 001839 366 SDIESGNGEADVLIQSIISIKSIIKQDPSCHEK----LFRSLDSIKVPEARVMIIWMVGEYSSVGVKIPRMLTTVLKYLA 441 (1007)
Q Consensus 366 s~~~~~~~~~~vV~EsVvvIk~Llq~~P~~~~~----L~~~ld~I~~p~ArAsIIWLLGEY~~~~e~ip~ia~DvLR~l~ 441 (1007)
.=.+....|.+|-.++.-+|+..+. ||+.++++..+..---|+-++|.-|-. .|. ...+.|+++
T Consensus 405 --------g~e~K~aivd~Ii~iie~~pdsKe~~L~~LCefIEDce~~~i~~rILhlLG~EgP~---a~~-Pskyir~iy 472 (865)
T KOG1078|consen 405 --------GFEFKRAIVDAIIDIIEENPDSKERGLEHLCEFIEDCEFTQIAVRILHLLGKEGPK---APN-PSKYIRFIY 472 (865)
T ss_pred --------CchHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHhccchHHHHHHHHHHhccCCC---CCC-cchhhHHHh
Confidence 1113333455666788888887654 899998888888778899999998743 222 346789999
Q ss_pred HhhccCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHccCCChhHHhHHHHHHHHccC
Q 001839 442 WCFKSEAVETKLQILNTTIKVLLCAKGGDMWTITRLFSYLLELAECDLNYDVRDRARFFKKLFSH 506 (1007)
Q Consensus 442 k~F~~E~~~VKlqILtlaaKL~~~~p~e~~~~i~~L~qyvLeLak~D~n~DVRDRArfy~~LL~~ 506 (1007)
.+..-|...||...+++++|+....+.-.. .+.-+ |..|-+|.+-+|||||+||.+.+..
T Consensus 473 NRviLEn~ivRaaAv~alaKfg~~~~~l~~-sI~vl----lkRc~~D~DdevRdrAtf~l~~l~~ 532 (865)
T KOG1078|consen 473 NRVILENAIVRAAAVSALAKFGAQDVVLLP-SILVL----LKRCLNDSDDEVRDRATFYLKNLEE 532 (865)
T ss_pred hhhhhhhhhhHHHHHHHHHHHhcCCCCccc-cHHHH----HHHHhcCchHHHHHHHHHHHHHhhh
Confidence 999999999999999999999966654222 23333 4446689999999999999998873
No 12
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=99.64 E-value=8.3e-14 Score=159.40 Aligned_cols=274 Identities=16% Similarity=0.148 Sum_probs=218.9
Q ss_pred cccCCChHHHHHHHHHHHhcCC----HHHHHHHHHHHHHhhcCC-CCchhhHHHHHHHHHHHCCCccccccceeeeccCC
Q 001839 216 LLWSHNSAVVLAAAGVHWIMSP----KEDVKRIVKPLLFILRSS-GASKYVVLCNIQVFAKALPHLFVPHYEDFFVSSSD 290 (1007)
Q Consensus 216 LLqS~NsAVVlaaa~l~~~lap----~~~l~~~~~pLv~LL~S~-~eiqyvvL~~I~~i~~~~p~lF~~~l~~Ffv~~~D 290 (1007)
.|.+....|.|++|++.+.++. ++.+...+..|-.+|.++ .-.||-+++.|..|+..+|+...-.-+..--+-+|
T Consensus 272 wls~k~emV~lE~Ar~v~~~~~~nv~~~~~~~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~kv~vcN~evEsLIsd 351 (898)
T COG5240 272 WLSDKFEMVFLEAARAVCALSEENVGSQFVDQTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQKVSVCNKEVESLISD 351 (898)
T ss_pred HhcCcchhhhHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCceeeecChhHHHHhhc
Confidence 3445568899999999887654 356788888898888875 46799999999999999997654332222222345
Q ss_pred C-HHHHHHHHHHHHhccCCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhcccccc
Q 001839 291 S-YQSKALKLEILSSIVTESSISSVFKEFQDYIRDPDRRFAADTVAAIGLCARKLPKMANTCVEGLLALIRQELLTSDIE 369 (1007)
Q Consensus 291 p-~~IK~lKLeIL~~Lane~Ni~~IL~EL~~Yv~d~D~~fv~~aI~AIG~~A~k~p~~a~~cl~~Ll~LLs~~~~~s~~~ 369 (1007)
. ..|....+.-|.+-.|++|+..+++.+-.|+.|..+.|+.-+|.||..+..+||..-..+++.|...|.+++
T Consensus 352 ~Nr~IstyAITtLLKTGt~e~idrLv~~I~sfvhD~SD~FKiI~ida~rsLsl~Fp~k~~s~l~FL~~~L~~eG------ 425 (898)
T COG5240 352 ENRTISTYAITTLLKTGTEETIDRLVNLIPSFVHDMSDGFKIIAIDALRSLSLLFPSKKLSYLDFLGSSLLQEG------ 425 (898)
T ss_pred ccccchHHHHHHHHHcCchhhHHHHHHHHHHHHHhhccCceEEeHHHHHHHHhhCcHHHHHHHHHHHHHHHhcc------
Confidence 3 578999999999999999999999999999999999999999999999999999999999999999887642
Q ss_pred CCCCCccchhhHHHHHHHHHHcCCchHHH----HHHhhhccCchhhHHhhhhhccccccCCCCccccHHHHHHHHHHhhc
Q 001839 370 SGNGEADVLIQSIISIKSIIKQDPSCHEK----LFRSLDSIKVPEARVMIIWMVGEYSSVGVKIPRMLTTVLKYLAWCFK 445 (1007)
Q Consensus 370 ~~~~~~~vV~EsVvvIk~Llq~~P~~~~~----L~~~ld~I~~p~ArAsIIWLLGEY~~~~e~ip~ia~DvLR~l~k~F~ 445 (1007)
+=..-.-.|.+|.+++...|+..+. ||..++++..++.-..|+-|+|+-+- ..+. ...+.|.++++..
T Consensus 426 ----g~eFK~~~Vdaisd~~~~~p~skEraLe~LC~fIEDcey~~I~vrIL~iLG~EgP---~a~~-P~~yvrhIyNR~i 497 (898)
T COG5240 426 ----GLEFKKYMVDAISDAMENDPDSKERALEVLCTFIEDCEYHQITVRILGILGREGP---RAKT-PGKYVRHIYNRLI 497 (898)
T ss_pred ----cchHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHhhcchhHHHHHHHHHhcccCC---CCCC-cchHHHHHHHHHH
Confidence 1123334556788899999998765 89999999999988999999999874 3333 3467899999999
Q ss_pred cCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHccCCChhHHhHHHHHHHHccC
Q 001839 446 SEAVETKLQILNTTIKVLLCAKGGDMWTITRLFSYLLELAECDLNYDVRDRARFFKKLFSH 506 (1007)
Q Consensus 446 ~E~~~VKlqILtlaaKL~~~~p~e~~~~i~~L~qyvLeLak~D~n~DVRDRArfy~~LL~~ 506 (1007)
-|...||...+.+..|+.+..... ...+-...+|..|..|.|-+|||||-|..+.+..
T Consensus 498 LEN~ivRsaAv~aLskf~ln~~d~---~~~~sv~~~lkRclnD~DdeVRdrAsf~l~~~~~ 555 (898)
T COG5240 498 LENNIVRSAAVQALSKFALNISDV---VSPQSVENALKRCLNDQDDEVRDRASFLLRNMRL 555 (898)
T ss_pred HhhhHHHHHHHHHHHHhccCcccc---ccHHHHHHHHHHHhhcccHHHHHHHHHHHHhhhh
Confidence 999999999999999997765332 2223344556667789999999999999988864
No 13
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.48 E-value=3.5e-10 Score=134.30 Aligned_cols=126 Identities=21% Similarity=0.167 Sum_probs=106.0
Q ss_pred CCCCCcccCCcccccCCCCeeEEEEEEEcCCCCccceEEEEEcCCeeeeEEecCcccccccccCCHHHHHHHhhcCCCCc
Q 001839 802 SDLPTLVPMEEITSLEPGQTMKRILEVRFHHHLLPLKLALHCNGKKLPVKLRPDIGYFIKPVPMDMETFIEMESRLPGMF 881 (1007)
Q Consensus 802 ~~~~~~~~f~~i~~l~p~~~~~~~~~idF~~~~~~~~~~l~~~~~~~~v~i~p~vgel~~p~~ms~~~f~~~~~~L~GM~ 881 (1007)
-..|+.+++.+|+.|.+-+.....+.+.|+++. ++..++..+.++.++.+.|.+ ..|.-|+.++|..-+..+|||.
T Consensus 768 ~~~p~~i~~~~~ell~~~~g~gl~~~y~f~r~~-~~~i~~~~~n~~~~~~~~~~l---~~p~gm~i~ef~~i~s~~pg~~ 843 (968)
T KOG1060|consen 768 LKIPTHIEEKSIELLNEVEGSGLDLEYSFSRLP-DVSISLHFTNKSDLELLGIHL---KLPAGMSIKEFSPIESLPPGAS 843 (968)
T ss_pred ccCCccCcchhHhhhhhcccCCcceeeeccCCC-CeeEEEecccCCCccccccee---eccccccccccccccccCCCcc
Confidence 356889999999999999999999999999988 699999999999999999887 9999999999999999999999
Q ss_pred cccc---------------------ceecccCcCcccccccchhhcchhhhhhHHHHHHHhhhcccceeeecCcccc
Q 001839 882 EYAR---------------------SCTFTDHLGEVDKDTDESSLLKDKYLVICESLASKMLSNANIFLVSVDMPVA 937 (1007)
Q Consensus 882 E~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~an~~~v~~~~~~~ 937 (1007)
+++. +|+|.++..++. ..-+.++++..++....+.|+..|+.++.. .|++
T Consensus 844 ~~~~~~i~F~dst~~~~~~l~~~~g~~~~~~pvge~~-----~~v~~~~~~~~~E~~~L~gln~~~~~l~~~-~~~a 914 (968)
T KOG1060|consen 844 ASVVLGIDFCDSTQAAEWQLLTDDGRVRFQPPVGELV-----QPVRMSEEDFKKERGKLGGLNEHVIQLENP-NPSA 914 (968)
T ss_pred eeeeeeeeccccccceeEEEEeccCcEEecCchhhhh-----ccccCCHHHHHhhhhhhcccchhheeeecc-cchh
Confidence 9753 455555544432 122467789999999999999999999976 4553
No 14
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=98.57 E-value=1.8e-06 Score=102.80 Aligned_cols=67 Identities=27% Similarity=0.316 Sum_probs=30.1
Q ss_pred hhHHHHHHHHhhcCCCChhHHHHHHHHHHHHhhcCchhhHhhHHHHHHHHhcCCChhHHHHHHHHHHHhC
Q 001839 9 ISPLVLVAVGKCARDPSVFVRKCAANALPKLHELRQEEITSAIEEIVGILLNDRSPGVVGAAAAAFASIC 78 (1007)
Q Consensus 9 I~piv~~aIkk~~~D~SPYVRKtAA~AI~Kly~ldpe~~~~~LieiL~~LL~D~~p~VvgsAv~Af~EIc 78 (1007)
.+-+++.+++|-+.|++||+|-.|..++.++- .| +-.+.+...+.++|.|++|.|--.|+.++..++
T Consensus 76 ~~~l~~n~l~kdl~~~n~~~~~lAL~~l~~i~--~~-~~~~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~ 142 (526)
T PF01602_consen 76 LLILIINSLQKDLNSPNPYIRGLALRTLSNIR--TP-EMAEPLIPDVIKLLSDPSPYVRKKAALALLKIY 142 (526)
T ss_dssp HHHHHHHHHHHHHCSSSHHHHHHHHHHHHHH---SH-HHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCCCHHHHHHHHhhhhhhc--cc-chhhHHHHHHHHHhcCCchHHHHHHHHHHHHHh
Confidence 33444444444444444444444444444432 33 233334444444444444444444444444443
No 15
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=98.16 E-value=8.2e-06 Score=84.75 Aligned_cols=112 Identities=25% Similarity=0.309 Sum_probs=93.4
Q ss_pred cccchhhhHHHHHHHHhhcCCCChhHHHHHHHHHHHHhhcCchhhHhhH-HHHHHHHhcCCChhHHHHHHHHHHHhCCC-
Q 001839 3 GIRLHVISPLVLVAVGKCARDPSVFVRKCAANALPKLHELRQEEITSAI-EEIVGILLNDRSPGVVGAAAAAFASICPN- 80 (1007)
Q Consensus 3 sIRVp~I~piv~~aIkk~~~D~SPYVRKtAA~AI~Kly~ldpe~~~~~L-ieiL~~LL~D~~p~VvgsAv~Af~EIcP~- 80 (1007)
.+|.|.+++..+..+.+++.|.+|+|||+|++++.+|..-+.---++.+ ..++ .+|.|.++.|...|...|.++...
T Consensus 16 ~~r~~~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~k~~l~~~~l-~~l~D~~~~Ir~~A~~~~~e~~~~~ 94 (178)
T PF12717_consen 16 CIRYPNLVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKVKGQLFSRIL-KLLVDENPEIRSLARSFFSELLKKR 94 (178)
T ss_pred HHhCcHHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceeehhhhhHHHH-HHHcCCCHHHHHHHHHHHHHHHHhc
Confidence 5799999999999999999999999999999999999988763356666 5555 678999999999999999999755
Q ss_pred CccchHHHHHHHHHhCCCCChhhH---------HHHHHHHHHhh
Q 001839 81 NFTLIGRNYRNLCQILPDVEEWGQ---------ILLIEILLRYV 115 (1007)
Q Consensus 81 rldLihk~yrkLc~~L~d~dEWgQ---------v~iL~lL~rY~ 115 (1007)
.-..+..++-.++..|..+.+|.+ ..|++.|..|.
T Consensus 95 ~~~~i~~~~~e~i~~l~~~~~~~~~~~~~~~~~~~I~~fll~~i 138 (178)
T PF12717_consen 95 NPNIIYNNFPELISSLNNCYEHPVYGPLSREKRKKIYKFLLDFI 138 (178)
T ss_pred cchHHHHHHHHHHHHHhCccccccccccCHHHHHHHHHHHHHHc
Confidence 456777788888888888888863 36677777665
No 16
>PTZ00429 beta-adaptin; Provisional
Probab=98.07 E-value=0.0037 Score=78.22 Aligned_cols=84 Identities=14% Similarity=0.069 Sum_probs=56.6
Q ss_pred hhcCCCChhHHHHHHHHHHHHhhcCchhhHhhHHHHHHHHhcCCChhHHHHHHHHHHHhCCCCccchHHHHHHHHHhCCC
Q 001839 19 KCARDPSVFVRKCAANALPKLHELRQEEITSAIEEIVGILLNDRSPGVVGAAAAAFASICPNNFTLIGRNYRNLCQILPD 98 (1007)
Q Consensus 19 k~~~D~SPYVRKtAA~AI~Kly~ldpe~~~~~LieiL~~LL~D~~p~VvgsAv~Af~EIcP~rldLihk~yrkLc~~L~d 98 (1007)
|++.-.+.-+||-.-+.+...-+..| +..-..+.-+.+=|.|++|.|-|.|+..+..|.-. +++-...+.+-+.|.|
T Consensus 75 k~~~S~d~elKKLvYLYL~~ya~~~p-elalLaINtl~KDl~d~Np~IRaLALRtLs~Ir~~--~i~e~l~~~lkk~L~D 151 (746)
T PTZ00429 75 KLAPSTDLELKKLVYLYVLSTARLQP-EKALLAVNTFLQDTTNSSPVVRALAVRTMMCIRVS--SVLEYTLEPLRRAVAD 151 (746)
T ss_pred HHhCCCCHHHHHHHHHHHHHHcccCh-HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHcCCcH--HHHHHHHHHHHHHhcC
Confidence 47777788889988888887767777 33333455566667789999999998888877522 2333344455556677
Q ss_pred CChhhHH
Q 001839 99 VEEWGQI 105 (1007)
Q Consensus 99 ~dEWgQv 105 (1007)
.+++=.-
T Consensus 152 ~~pYVRK 158 (746)
T PTZ00429 152 PDPYVRK 158 (746)
T ss_pred CCHHHHH
Confidence 7776533
No 17
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=97.94 E-value=0.00054 Score=87.78 Aligned_cols=90 Identities=17% Similarity=0.131 Sum_probs=68.2
Q ss_pred HHHHHHhhcCCCChhHHHHHHHHHHHHhhcCchhhHhhHHHHHHHHhcCCChhHHHHHHHHHHHhCCCCccchHHHHHHH
Q 001839 13 VLVAVGKCARDPSVFVRKCAANALPKLHELRQEEITSAIEEIVGILLNDRSPGVVGAAAAAFASICPNNFTLIGRNYRNL 92 (1007)
Q Consensus 13 v~~aIkk~~~D~SPYVRKtAA~AI~Kly~ldpe~~~~~LieiL~~LL~D~~p~VvgsAv~Af~EIcP~rldLihk~yrkL 92 (1007)
.+..+.+.+.|.+|-||+.|+.++.++. ++ ..++.|..+|+|.++.|-..|+.++.++-... +...-|
T Consensus 622 ~~~~L~~~L~D~d~~VR~~Av~~L~~~~--~~-----~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~-----~~~~~L 689 (897)
T PRK13800 622 SVAELAPYLADPDPGVRRTAVAVLTETT--PP-----GFGPALVAALGDGAAAVRRAAAEGLRELVEVL-----PPAPAL 689 (897)
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHhhhc--ch-----hHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcc-----CchHHH
Confidence 4557788899999999999999999863 22 24455667889999999999999998883110 012356
Q ss_pred HHhCCCCChhhHHHHHHHHHHh
Q 001839 93 CQILPDVEEWGQILLIEILLRY 114 (1007)
Q Consensus 93 c~~L~d~dEWgQv~iL~lL~rY 114 (1007)
...|.+-|++-+..+++.|..-
T Consensus 690 ~~~L~~~d~~VR~~A~~aL~~~ 711 (897)
T PRK13800 690 RDHLGSPDPVVRAAALDVLRAL 711 (897)
T ss_pred HHHhcCCCHHHHHHHHHHHHhh
Confidence 7778888888888888887653
No 18
>PRK09687 putative lyase; Provisional
Probab=97.86 E-value=0.00083 Score=74.95 Aligned_cols=236 Identities=12% Similarity=0.050 Sum_probs=159.1
Q ss_pred HHHHHHhhcCCCChhHHHHHHHHHHHHhhcCchhhHhhHHHHHHHHhcCCChhHHHHHHHHHHHhCC-CCccchHHHHHH
Q 001839 13 VLVAVGKCARDPSVFVRKCAANALPKLHELRQEEITSAIEEIVGILLNDRSPGVVGAAAAAFASICP-NNFTLIGRNYRN 91 (1007)
Q Consensus 13 v~~aIkk~~~D~SPYVRKtAA~AI~Kly~ldpe~~~~~LieiL~~LL~D~~p~VvgsAv~Af~EIcP-~rldLihk~yrk 91 (1007)
-+..+.+.+.|.++.||..|+.++.++ .. +...+.+..|+.|.++.|-..|+.+|-++-. .+. ....+.-
T Consensus 24 ~~~~L~~~L~d~d~~vR~~A~~aL~~~---~~----~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~--~~~a~~~ 94 (280)
T PRK09687 24 NDDELFRLLDDHNSLKRISSIRVLQLR---GG----QDVFRLAIELCSSKNPIERDIGADILSQLGMAKRC--QDNVFNI 94 (280)
T ss_pred cHHHHHHHHhCCCHHHHHHHHHHHHhc---Cc----chHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccc--hHHHHHH
Confidence 356778889999999999999998865 22 3344556678999999999999999999853 221 2234555
Q ss_pred HHHh-CCCCChhhHHHHHHHHHHhhhhcccccchhhhhhhhhcccCCCcccccccccccccCCCCCCccchhhhhhhccc
Q 001839 92 LCQI-LPDVEEWGQILLIEILLRYVVASHGLVKESIMSSLLCIESSHSEKDVFDVNVALEDNGIPSRTYDSELVNLVSRS 170 (1007)
Q Consensus 92 Lc~~-L~d~dEWgQv~iL~lL~rY~r~~~~~~kp~~~f~~~~~~~~~~~~~~~~~~~~l~~q~~~~~~~~~~~~~~~~~~ 170 (1007)
|..+ +.|-+++-+-..+..|-..+...
T Consensus 95 L~~l~~~D~d~~VR~~A~~aLG~~~~~~---------------------------------------------------- 122 (280)
T PRK09687 95 LNNLALEDKSACVRASAINATGHRCKKN---------------------------------------------------- 122 (280)
T ss_pred HHHHHhcCCCHHHHHHHHHHHhcccccc----------------------------------------------------
Confidence 5555 45555555556666655432100
Q ss_pred cccccccccccCCCcccccccccCccccCCCCChhHHHHHHhhcccccCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 001839 171 YIEGLGEYLTRSSDTNARSSDLNGARFTSGKTNDDVKLLLQCTSPLLWSHNSAVVLAAAGVHWIMSPKEDVKRIVKPLLF 250 (1007)
Q Consensus 171 ~~~~~de~~~~~~~~~~~~~~~~~~~~~~~~~D~D~~lLL~~~~pLLqS~NsAVVlaaa~l~~~lap~~~l~~~~~pLv~ 250 (1007)
..++ ..++..+.+++.+.++-|=++++...-.+..+ .++.+|+.
T Consensus 123 -------------------------------~~~~-~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~~----~ai~~L~~ 166 (280)
T PRK09687 123 -------------------------------PLYS-PKIVEQSQITAFDKSTNVRFAVAFALSVINDE----AAIPLLIN 166 (280)
T ss_pred -------------------------------cccc-hHHHHHHHHHhhCCCHHHHHHHHHHHhccCCH----HHHHHHHH
Confidence 0000 12344556667788888999999887665543 57788999
Q ss_pred hhcC-CCCchhhHHHHHHHHHHHCCCccccccceeeeccCCC-HHHHHHHHHHHHhccCCCCHHHHHHHHHHhhccCChh
Q 001839 251 ILRS-SGASKYVVLCNIQVFAKALPHLFVPHYEDFFVSSSDS-YQSKALKLEILSSIVTESSISSVFKEFQDYIRDPDRR 328 (1007)
Q Consensus 251 LL~S-~~eiqyvvL~~I~~i~~~~p~lF~~~l~~Ffv~~~Dp-~~IK~lKLeIL~~Lane~Ni~~IL~EL~~Yv~d~D~~ 328 (1007)
+|.. ++.+++-+...+-.+....|.....-+.. ..|+ ..||...+.-|-.+-++.-+..|+++|.. .+
T Consensus 167 ~L~d~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~----L~D~~~~VR~~A~~aLg~~~~~~av~~Li~~L~~----~~-- 236 (280)
T PRK09687 167 LLKDPNGDVRNWAAFALNSNKYDNPDIREAFVAM----LQDKNEEIRIEAIIGLALRKDKRVLSVLIKELKK----GT-- 236 (280)
T ss_pred HhcCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHH----hcCCChHHHHHHHHHHHccCChhHHHHHHHHHcC----Cc--
Confidence 9975 57788888777776622234443332221 1443 68999999999999888777777777663 33
Q ss_pred HHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHh
Q 001839 329 FAADTVAAIGLCARKLPKMANTCVEGLLALIRQ 361 (1007)
Q Consensus 329 fv~~aI~AIG~~A~k~p~~a~~cl~~Ll~LLs~ 361 (1007)
+...++.|+|.++.. ..+..|..++..
T Consensus 237 ~~~~a~~ALg~ig~~------~a~p~L~~l~~~ 263 (280)
T PRK09687 237 VGDLIIEAAGELGDK------TLLPVLDTLLYK 263 (280)
T ss_pred hHHHHHHHHHhcCCH------hHHHHHHHHHhh
Confidence 567899999987753 567778887763
No 19
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=97.59 E-value=0.0037 Score=80.30 Aligned_cols=228 Identities=14% Similarity=0.081 Sum_probs=152.6
Q ss_pred HHHHHHHhhcCCCChhHHHHHHHHHHHHhhcCchhhHhhHHHHHHHHhcCCChhHHHHHHHHHHHhCCCCccchHHHHHH
Q 001839 12 LVLVAVGKCARDPSVFVRKCAANALPKLHELRQEEITSAIEEIVGILLNDRSPGVVGAAAAAFASICPNNFTLIGRNYRN 91 (1007)
Q Consensus 12 iv~~aIkk~~~D~SPYVRKtAA~AI~Kly~ldpe~~~~~LieiL~~LL~D~~p~VvgsAv~Af~EIcP~rldLihk~yrk 91 (1007)
-.+..|.+.+.|.++-||.+||-++.++-...+ . ...+..+|.|.++.|-.+|+.+|..+-+... ..
T Consensus 652 ~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~-~-----~~~L~~~L~~~d~~VR~~A~~aL~~~~~~~~-------~~ 718 (897)
T PRK13800 652 GFGPALVAALGDGAAAVRRAAAEGLRELVEVLP-P-----APALRDHLGSPDPVVRAAALDVLRALRAGDA-------AL 718 (897)
T ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccC-c-----hHHHHHHhcCCCHHHHHHHHHHHHhhccCCH-------HH
Confidence 345667788899999999999999988743222 1 1234567889999999999999988754321 24
Q ss_pred HHHhCCCCChhhHHHHHHHHHHhhhhcccccchhhhhhhhhcccCCCcccccccccccccCCCCCCccchhhhhhhcccc
Q 001839 92 LCQILPDVEEWGQILLIEILLRYVVASHGLVKESIMSSLLCIESSHSEKDVFDVNVALEDNGIPSRTYDSELVNLVSRSY 171 (1007)
Q Consensus 92 Lc~~L~d~dEWgQv~iL~lL~rY~r~~~~~~kp~~~f~~~~~~~~~~~~~~~~~~~~l~~q~~~~~~~~~~~~~~~~~~~ 171 (1007)
|+..|.|-|++-+...+..|.+....
T Consensus 719 l~~~L~D~d~~VR~~Av~aL~~~~~~------------------------------------------------------ 744 (897)
T PRK13800 719 FAAALGDPDHRVRIEAVRALVSVDDV------------------------------------------------------ 744 (897)
T ss_pred HHHHhcCCCHHHHHHHHHHHhcccCc------------------------------------------------------
Confidence 67788888888877776666543100
Q ss_pred ccccccccccCCCcccccccccCccccCCCCChhHHHHHHhhcccccCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 001839 172 IEGLGEYLTRSSDTNARSSDLNGARFTSGKTNDDVKLLLQCTSPLLWSHNSAVVLAAAGVHWIMSPKEDVKRIVKPLLFI 251 (1007)
Q Consensus 172 ~~~~de~~~~~~~~~~~~~~~~~~~~~~~~~D~D~~lLL~~~~pLLqS~NsAVVlaaa~l~~~lap~~~l~~~~~pLv~L 251 (1007)
. .+..+|...|+-|-.+++..+-.+..... .....|+.+
T Consensus 745 -----------------------------------~----~l~~~l~D~~~~VR~~aa~aL~~~~~~~~--~~~~~L~~l 783 (897)
T PRK13800 745 -----------------------------------E----SVAGAATDENREVRIAVAKGLATLGAGGA--PAGDAVRAL 783 (897)
T ss_pred -----------------------------------H----HHHHHhcCCCHHHHHHHHHHHHHhccccc--hhHHHHHHH
Confidence 0 11235667788888999988777654311 224567788
Q ss_pred hcC-CCCchhhHHHHHHHHHHHCCCccccccceeeeccCCCHHHHHHHHHHHHhccCCCCHHHHHHHHHHhhccCChhHH
Q 001839 252 LRS-SGASKYVVLCNIQVFAKALPHLFVPHYEDFFVSSSDSYQSKALKLEILSSIVTESSISSVFKEFQDYIRDPDRRFA 330 (1007)
Q Consensus 252 L~S-~~eiqyvvL~~I~~i~~~~p~lF~~~l~~Ffv~~~Dp~~IK~lKLeIL~~Lane~Ni~~IL~EL~~Yv~d~D~~fv 330 (1007)
+.. ++++|..++..+..+-. +......+..+ +.++...||.-.++.|..+.++.-+ .-|...+.|.+..+.
T Consensus 784 l~D~d~~VR~aA~~aLg~~g~--~~~~~~~l~~a--L~d~d~~VR~~Aa~aL~~l~~~~a~----~~L~~~L~D~~~~VR 855 (897)
T PRK13800 784 TGDPDPLVRAAALAALAELGC--PPDDVAAATAA--LRASAWQVRQGAARALAGAAADVAV----PALVEALTDPHLDVR 855 (897)
T ss_pred hcCCCHHHHHHHHHHHHhcCC--cchhHHHHHHH--hcCCChHHHHHHHHHHHhccccchH----HHHHHHhcCCCHHHH
Confidence 865 68889988888776522 22111112222 2233467999999999998776544 334445578899999
Q ss_pred HHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Q 001839 331 ADTVAAIGLCARKLPKMANTCVEGLLALIR 360 (1007)
Q Consensus 331 ~~aI~AIG~~A~k~p~~a~~cl~~Ll~LLs 360 (1007)
+.|+++||++ ..+ ......|...++
T Consensus 856 ~~A~~aL~~~--~~~---~~a~~~L~~al~ 880 (897)
T PRK13800 856 KAAVLALTRW--PGD---PAARDALTTALT 880 (897)
T ss_pred HHHHHHHhcc--CCC---HHHHHHHHHHHh
Confidence 9999999985 122 234555666665
No 20
>PRK09687 putative lyase; Provisional
Probab=97.32 E-value=0.012 Score=65.79 Aligned_cols=221 Identities=12% Similarity=0.028 Sum_probs=127.3
Q ss_pred HHHHHHhhcCCCChhHHHHHHHHHHHHhhcCchhhHhhHHHHHHH-HhcCCChhHHHHHHHHHHHhCCCCccchHHHHHH
Q 001839 13 VLVAVGKCARDPSVFVRKCAANALPKLHELRQEEITSAIEEIVGI-LLNDRSPGVVGAAAAAFASICPNNFTLIGRNYRN 91 (1007)
Q Consensus 13 v~~aIkk~~~D~SPYVRKtAA~AI~Kly~ldpe~~~~~LieiL~~-LL~D~~p~VvgsAv~Af~EIcP~rldLihk~yrk 91 (1007)
+...+.+.+.|.+|.||+.|+.++..+-. +........+.|.. ++.|+++.|-.+|+.++-++|+.........+-.
T Consensus 55 ~~~~l~~ll~~~d~~vR~~A~~aLg~lg~--~~~~~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~~~~a~~~ 132 (280)
T PRK09687 55 VFRLAIELCSSKNPIERDIGADILSQLGM--AKRCQDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLYSPKIVEQ 132 (280)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhcCC--CccchHHHHHHHHHHHhcCCCHHHHHHHHHHHhcccccccccchHHHHH
Confidence 45566778899999999999999998632 21111233444444 4899999999999999999986553333334445
Q ss_pred HHHhCCCCChhhHHHHHHHHHHhhhhcccccchhhhhhhhhcccCCCcccccccccccccCCCCCCccchhhhhhhcccc
Q 001839 92 LCQILPDVEEWGQILLIEILLRYVVASHGLVKESIMSSLLCIESSHSEKDVFDVNVALEDNGIPSRTYDSELVNLVSRSY 171 (1007)
Q Consensus 92 Lc~~L~d~dEWgQv~iL~lL~rY~r~~~~~~kp~~~f~~~~~~~~~~~~~~~~~~~~l~~q~~~~~~~~~~~~~~~~~~~ 171 (1007)
|...+.|-+..-+...+..|.++.-
T Consensus 133 l~~~~~D~~~~VR~~a~~aLg~~~~------------------------------------------------------- 157 (280)
T PRK09687 133 SQITAFDKSTNVRFAVAFALSVIND------------------------------------------------------- 157 (280)
T ss_pred HHHHhhCCCHHHHHHHHHHHhccCC-------------------------------------------------------
Confidence 5555555544334334444432210
Q ss_pred ccccccccccCCCcccccccccCccccCCCCChhHHHHHHhhcccccCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 001839 172 IEGLGEYLTRSSDTNARSSDLNGARFTSGKTNDDVKLLLQCTSPLLWSHNSAVVLAAAGVHWIMSPKEDVKRIVKPLLFI 251 (1007)
Q Consensus 172 ~~~~de~~~~~~~~~~~~~~~~~~~~~~~~~D~D~~lLL~~~~pLLqS~NsAVVlaaa~l~~~lap~~~l~~~~~pLv~L 251 (1007)
..-+..+.++|...++.|=.+++...=.+... -..+..+|+.+
T Consensus 158 -----------------------------------~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~--~~~~~~~L~~~ 200 (280)
T PRK09687 158 -----------------------------------EAAIPLLINLLKDPNGDVRNWAAFALNSNKYD--NPDIREAFVAM 200 (280)
T ss_pred -----------------------------------HHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCC--CHHHHHHHHHH
Confidence 01233445556666777766666655444211 12455667777
Q ss_pred hcC-CCCchhhHHHHHHHHHHHCCCccccccceeeeccCCCHHHHHHHHHHHHhccCCCCHHHHHHHHHHhhc-cCChhH
Q 001839 252 LRS-SGASKYVVLCNIQVFAKALPHLFVPHYEDFFVSSSDSYQSKALKLEILSSIVTESSISSVFKEFQDYIR-DPDRRF 329 (1007)
Q Consensus 252 L~S-~~eiqyvvL~~I~~i~~~~p~lF~~~l~~Ffv~~~Dp~~IK~lKLeIL~~Lane~Ni~~IL~EL~~Yv~-d~D~~f 329 (1007)
|.. +.+||--+...+..+ ..+.. .|++... ..|+. ++....+-|-.+.++. .+.-|+.++. +.|..+
T Consensus 201 L~D~~~~VR~~A~~aLg~~--~~~~a-v~~Li~~---L~~~~-~~~~a~~ALg~ig~~~----a~p~L~~l~~~~~d~~v 269 (280)
T PRK09687 201 LQDKNEEIRIEAIIGLALR--KDKRV-LSVLIKE---LKKGT-VGDLIIEAAGELGDKT----LLPVLDTLLYKFDDNEI 269 (280)
T ss_pred hcCCChHHHHHHHHHHHcc--CChhH-HHHHHHH---HcCCc-hHHHHHHHHHhcCCHh----HHHHHHHHHhhCCChhH
Confidence 754 355555555544432 11222 2222111 11222 5667888888888874 3444444553 567888
Q ss_pred HHHHHHHHH
Q 001839 330 AADTVAAIG 338 (1007)
Q Consensus 330 v~~aI~AIG 338 (1007)
..+++.++.
T Consensus 270 ~~~a~~a~~ 278 (280)
T PRK09687 270 ITKAIDKLK 278 (280)
T ss_pred HHHHHHHHh
Confidence 888888774
No 21
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=97.12 E-value=0.22 Score=60.24 Aligned_cols=110 Identities=15% Similarity=0.167 Sum_probs=84.9
Q ss_pred hhhhHHHHHHHHhhcCCCChhHHHHHHHHHHHHhhcCchh----hHhhHHHHHHHHhcCCChhHHHHHHHHHHHhCCCCc
Q 001839 7 HVISPLVLVAVGKCARDPSVFVRKCAANALPKLHELRQEE----ITSAIEEIVGILLNDRSPGVVGAAAAAFASICPNNF 82 (1007)
Q Consensus 7 p~I~piv~~aIkk~~~D~SPYVRKtAA~AI~Kly~ldpe~----~~~~LieiL~~LL~D~~p~VvgsAv~Af~EIcP~rl 82 (1007)
..+.|-....+.+++.+++|.||.-|+.+|.++-+-.... ....+...|-.+|.|.+..|...|+.++..++....
T Consensus 72 ~~l~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~ 151 (503)
T PF10508_consen 72 DSLLPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDPDLSVAKAAIKALKKLASHPE 151 (503)
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCch
Confidence 4457778889999999999999999999999886543310 234567777789999999999999999999986542
Q ss_pred --cch-HH-HHHHHHHhCCCCChhhHHHHHHHHHHhhh
Q 001839 83 --TLI-GR-NYRNLCQILPDVEEWGQILLIEILLRYVV 116 (1007)
Q Consensus 83 --dLi-hk-~yrkLc~~L~d~dEWgQv~iL~lL~rY~r 116 (1007)
+.+ .. ...+|.+.+...++=.+..+++++...+.
T Consensus 152 ~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~ 189 (503)
T PF10508_consen 152 GLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIAS 189 (503)
T ss_pred hHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHh
Confidence 222 22 26777777777788888888888887764
No 22
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.86 E-value=0.21 Score=61.85 Aligned_cols=93 Identities=24% Similarity=0.329 Sum_probs=62.8
Q ss_pred cccccccCCCCeeEEEEecCCCCCCCCCeEEEEEEEEeCCCCc-eeeeEeeccccchhhhhhhhhhhccccccccCCCCC
Q 001839 727 YTLLDPANGNGLKVYYSFSSEASTISPQLVCLETFFENCSSET-MSEVTLVDEESHKALDLADLTLATTASSLTSQSDLP 805 (1007)
Q Consensus 727 ~~LL~~~~g~GL~v~Y~F~r~p~~~s~~mv~v~l~f~N~s~~~-i~~i~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 805 (1007)
+..+..---.||.+...|+|+|.- ++..-+.++|+|.+.-+ ++..+.... .|......
T Consensus 747 ~~~~~~~dkssl~~~~~~~k~~~n--~~~t~i~~~~tn~s~~~~l~~F~~~aA----v~ks~ql~--------------- 805 (866)
T KOG1062|consen 747 YPSIKAYDKSSLLVELSFTKGPSN--KKTTVITLTFTNLSPNTDLTDFHFQAA----VPKSLQLQ--------------- 805 (866)
T ss_pred CCcceeeecccceeeeeeccCCCC--CceeEEEeeccCCCCCcchhhhccccc----chHHHhhc---------------
Confidence 566667778899999999999984 66778999999999877 999888654 23333211
Q ss_pred CcccCCcccccCC--CCeeEEEEEEEcCCCCccceEEEEE
Q 001839 806 TLVPMEEITSLEP--GQTMKRILEVRFHHHLLPLKLALHC 843 (1007)
Q Consensus 806 ~~~~f~~i~~l~p--~~~~~~~~~idF~~~~~~~~~~l~~ 843 (1007)
+.+-.- -.++| |+.++-.|+|. +++..+.++.+.+
T Consensus 806 -l~~~ss-~~~~~~~~g~~tq~~rv~-n~~~~~l~~r~rl 842 (866)
T KOG1062|consen 806 -LQPASS-NSLPASGGGHITQVLRVL-NPQKSTLKLRLRL 842 (866)
T ss_pred -cCCccc-cccCcCCCCcceeEEEEe-cCCCceEEEEEEE
Confidence 111111 14666 66677777775 4445566666544
No 23
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=96.80 E-value=0.0044 Score=58.13 Aligned_cols=102 Identities=20% Similarity=0.080 Sum_probs=79.0
Q ss_pred HHHHHHhhcCCCChhHHHHHHHHHHHHhhcCchh----hHhhHHHHHHHHhcCCChhHHHHHHHHHHHhCCCC---ccch
Q 001839 13 VLVAVGKCARDPSVFVRKCAANALPKLHELRQEE----ITSAIEEIVGILLNDRSPGVVGAAAAAFASICPNN---FTLI 85 (1007)
Q Consensus 13 v~~aIkk~~~D~SPYVRKtAA~AI~Kly~ldpe~----~~~~LieiL~~LL~D~~p~VvgsAv~Af~EIcP~r---ldLi 85 (1007)
++..+.+.+.|.++++|+.|+.++.++....|+. .....++.+..+|+|+++.|..+|+.++..++-.. ...+
T Consensus 8 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 87 (120)
T cd00020 8 GLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKLIV 87 (120)
T ss_pred ChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHHHHH
Confidence 4566677888999999999999999999876532 22256677788999999999999999999998543 2233
Q ss_pred HH--HHHHHHHhCCCCChhhHHHHHHHHHHh
Q 001839 86 GR--NYRNLCQILPDVEEWGQILLIEILLRY 114 (1007)
Q Consensus 86 hk--~yrkLc~~L~d~dEWgQv~iL~lL~rY 114 (1007)
++ ....|.+.|.+.+.+-+-..+.+|...
T Consensus 88 ~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l 118 (120)
T cd00020 88 LEAGGVPKLVNLLDSSNEDIQKNATGALSNL 118 (120)
T ss_pred HHCCChHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 33 377888888888888887777777653
No 24
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=96.70 E-value=0.19 Score=68.59 Aligned_cols=280 Identities=14% Similarity=0.089 Sum_probs=181.0
Q ss_pred HHHHHhhcCCCChhHHHHHHHHHHHHhhcCchhhH-----hhHHHHHHHHhcCCChhHHHHHHHHHHHhCCCC---ccch
Q 001839 14 LVAVGKCARDPSVFVRKCAANALPKLHELRQEEIT-----SAIEEIVGILLNDRSPGVVGAAAAAFASICPNN---FTLI 85 (1007)
Q Consensus 14 ~~aIkk~~~D~SPYVRKtAA~AI~Kly~ldpe~~~-----~~LieiL~~LL~D~~p~VvgsAv~Af~EIcP~r---ldLi 85 (1007)
+..+-+.+.+.++-+|+.|+.++..+-.-.+ +++ ...++.|-.||...++.+.-.|+.++..+|-+. -.++
T Consensus 448 Ip~LV~LL~s~s~~iQ~~A~~~L~nLa~~nd-enr~aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~qir~iV 526 (2102)
T PLN03200 448 VQLLISLLGLSSEQQQEYAVALLAILTDEVD-ESKWAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIRACV 526 (2102)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHcCCH-HHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHHHHHHH
Confidence 4566677778899999999999988866554 333 235666778999889999999999999998532 2233
Q ss_pred --HHHHHHHHHhCCCCChhhHHHHHHHHHHhhhhcccccchhhhhhhhhcccCCCcccccccccccccCCCCCCccchhh
Q 001839 86 --GRNYRNLCQILPDVEEWGQILLIEILLRYVVASHGLVKESIMSSLLCIESSHSEKDVFDVNVALEDNGIPSRTYDSEL 163 (1007)
Q Consensus 86 --hk~yrkLc~~L~d~dEWgQv~iL~lL~rY~r~~~~~~kp~~~f~~~~~~~~~~~~~~~~~~~~l~~q~~~~~~~~~~~ 163 (1007)
++.+..||++|..-+.=+|...+..|.......
T Consensus 527 ~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~--------------------------------------------- 561 (2102)
T PLN03200 527 ESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTA--------------------------------------------- 561 (2102)
T ss_pred HHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhcc---------------------------------------------
Confidence 345777888888777666766666666554210
Q ss_pred hhhhccccccccccccccCCCcccccccccCccccCCCCChhHHHHHHhhcccccCCChHHHHHHHHHHHhc---CCHHH
Q 001839 164 VNLVSRSYIEGLGEYLTRSSDTNARSSDLNGARFTSGKTNDDVKLLLQCTSPLLWSHNSAVVLAAAGVHWIM---SPKED 240 (1007)
Q Consensus 164 ~~~~~~~~~~~~de~~~~~~~~~~~~~~~~~~~~~~~~~D~D~~lLL~~~~pLLqS~NsAVVlaaa~l~~~l---ap~~~ 240 (1007)
|.+ -+..+..||.+.++.+...+.++.-++ ....+
T Consensus 562 ---------------------------------------d~~---~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d 599 (2102)
T PLN03200 562 ---------------------------------------DAA---TISQLTALLLGDLPESKVHVLDVLGHVLSVASLED 599 (2102)
T ss_pred ---------------------------------------chh---HHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhH
Confidence 000 012233456677776666666654333 33222
Q ss_pred -H------HHHHHHHHHhhcC-CCCchhhHHHHHHHHHHHCCCc---------cccccceeeeccCCCHHHHHHHHHHHH
Q 001839 241 -V------KRIVKPLLFILRS-SGASKYVVLCNIQVFAKALPHL---------FVPHYEDFFVSSSDSYQSKALKLEILS 303 (1007)
Q Consensus 241 -l------~~~~~pLv~LL~S-~~eiqyvvL~~I~~i~~~~p~l---------F~~~l~~Ffv~~~Dp~~IK~lKLeIL~ 303 (1007)
+ ...+..|+.||++ ++++|--+...|..++..+++. +.|-+.. ..+....+++.+---|.
T Consensus 600 ~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~L---Lss~~~~v~keAA~AL~ 676 (2102)
T PLN03200 600 LVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQDLCESLATDEIINPCIKL---LTNNTEAVATQSARALA 676 (2102)
T ss_pred HHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHH---HhcCChHHHHHHHHHHH
Confidence 1 2367788999976 4667777777777777655542 2232222 22333447777777777
Q ss_pred hccC---CCCHHHHHH-----HHHHhhccCChhHHHHHHHHHHHHHHhCcccH----HHHHHHHHHHHHhhhccccccCC
Q 001839 304 SIVT---ESSISSVFK-----EFQDYIRDPDRRFAADTVAAIGLCARKLPKMA----NTCVEGLLALIRQELLTSDIESG 371 (1007)
Q Consensus 304 ~Lan---e~Ni~~IL~-----EL~~Yv~d~D~~fv~~aI~AIG~~A~k~p~~a----~~cl~~Ll~LLs~~~~~s~~~~~ 371 (1007)
+|++ +.|...+++ =|...+++.|.+++..+..+|+.++..-.... ...+..|+++|+.+
T Consensus 677 nL~~~~~~~q~~~~v~~GaV~pL~~LL~~~d~~v~e~Al~ALanLl~~~e~~~ei~~~~~I~~Lv~lLr~G--------- 747 (2102)
T PLN03200 677 ALSRSIKENRKVSYAAEDAIKPLIKLAKSSSIEVAEQAVCALANLLSDPEVAAEALAEDIILPLTRVLREG--------- 747 (2102)
T ss_pred HHHhCCCHHHHHHHHHcCCHHHHHHHHhCCChHHHHHHHHHHHHHHcCchHHHHHHhcCcHHHHHHHHHhC---------
Confidence 7774 445444333 46677788899999999999999986543322 34578899999853
Q ss_pred CCCccchhhHHHHHHHHHHcCCch
Q 001839 372 NGEADVLIQSIISIKSIIKQDPSC 395 (1007)
Q Consensus 372 ~~~~~vV~EsVvvIk~Llq~~P~~ 395 (1007)
....-..++-.|.+|.+..|..
T Consensus 748 --~~~~k~~Aa~AL~~L~~~~~~~ 769 (2102)
T PLN03200 748 --TLEGKRNAARALAQLLKHFPVD 769 (2102)
T ss_pred --ChHHHHHHHHHHHHHHhCCChh
Confidence 2223334566778888888743
No 25
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=96.48 E-value=0.85 Score=62.74 Aligned_cols=378 Identities=14% Similarity=0.128 Sum_probs=220.3
Q ss_pred HHHHHhhcCCCChhHHHHHHHHHHHHhhcCchhhH-----hhHHHHHHHHhcCCChhHHHHHHHHHHHhCCCCccchHHH
Q 001839 14 LVAVGKCARDPSVFVRKCAANALPKLHELRQEEIT-----SAIEEIVGILLNDRSPGVVGAAAAAFASICPNNFTLIGRN 88 (1007)
Q Consensus 14 ~~aIkk~~~D~SPYVRKtAA~AI~Kly~ldpe~~~-----~~LieiL~~LL~D~~p~VvgsAv~Af~EIcP~rldLihk~ 88 (1007)
++.+-+.+...++-+|+.||-||..+-...+ ..+ ...+..|-.+|++.++.+...|+.++..+.-.. -...
T Consensus 490 IP~LV~LL~s~~~~iqeeAawAL~NLa~~~~-qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~---d~~~ 565 (2102)
T PLN03200 490 IPPLVQLLETGSQKAKEDSATVLWNLCCHSE-DIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTA---DAAT 565 (2102)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhCCcH-HHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhcc---chhH
Confidence 4456677888899999999999998876332 211 122334556788899999999999998885221 0124
Q ss_pred HHHHHHhCCCCChhhHHHHHHHHHHhhhhcccccchhhhhhhhhcccCCCcccccccccccccCCCCCCccchhhhhhhc
Q 001839 89 YRNLCQILPDVEEWGQILLIEILLRYVVASHGLVKESIMSSLLCIESSHSEKDVFDVNVALEDNGIPSRTYDSELVNLVS 168 (1007)
Q Consensus 89 yrkLc~~L~d~dEWgQv~iL~lL~rY~r~~~~~~kp~~~f~~~~~~~~~~~~~~~~~~~~l~~q~~~~~~~~~~~~~~~~ 168 (1007)
+..||.+|..-++=.+.++|+.|.+-...- +.++. ..++.
T Consensus 566 I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~--------------------~~~d~------~~~g~-------------- 605 (2102)
T PLN03200 566 ISQLTALLLGDLPESKVHVLDVLGHVLSVA--------------------SLEDL------VREGS-------------- 605 (2102)
T ss_pred HHHHHHHhcCCChhHHHHHHHHHHHHHhhc--------------------chhHH------HHHhh--------------
Confidence 467888887767666677788776543100 00000 00000
Q ss_pred cccccccccccccCCCcccccccccCccccCCCCChhHHHHHHhhcccccCCChHHHHHHHHHHHhcCC--HHH-----H
Q 001839 169 RSYIEGLGEYLTRSSDTNARSSDLNGARFTSGKTNDDVKLLLQCTSPLLWSHNSAVVLAAAGVHWIMSP--KED-----V 241 (1007)
Q Consensus 169 ~~~~~~~de~~~~~~~~~~~~~~~~~~~~~~~~~D~D~~lLL~~~~pLLqS~NsAVVlaaa~l~~~lap--~~~-----l 241 (1007)
.+. --|..+..||+|.|..+--.|+.+...+.. +.. .
T Consensus 606 ---------------------------------~~~---ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d~~~avv~ 649 (2102)
T PLN03200 606 ---------------------------------AAN---DALRTLIQLLSSSKEETQEKAASVLADIFSSRQDLCESLAT 649 (2102)
T ss_pred ---------------------------------hcc---ccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChHHHHHHHH
Confidence 000 135667788888888888777777655432 111 2
Q ss_pred HHHHHHHHHhhcC-CCCchhhHHHHHHHHHHHC----------CCccccccceeeeccCCCHHHHHHHHHHHHhccCCC-
Q 001839 242 KRIVKPLLFILRS-SGASKYVVLCNIQVFAKAL----------PHLFVPHYEDFFVSSSDSYQSKALKLEILSSIVTES- 309 (1007)
Q Consensus 242 ~~~~~pLv~LL~S-~~eiqyvvL~~I~~i~~~~----------p~lF~~~l~~Ffv~~~Dp~~IK~lKLeIL~~Lane~- 309 (1007)
..++.||+.||++ +.+++.-+-..|..+.... -+...|-++.. .+....++...++.|.+|+...
T Consensus 650 agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL---~~~d~~v~e~Al~ALanLl~~~e 726 (2102)
T PLN03200 650 DEIINPCIKLLTNNTEAVATQSARALAALSRSIKENRKVSYAAEDAIKPLIKLA---KSSSIEVAEQAVCALANLLSDPE 726 (2102)
T ss_pred cCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHH---hCCChHHHHHHHHHHHHHHcCch
Confidence 3467899999876 3455544444443333211 12222221111 1223468899999999888755
Q ss_pred CHHH-----HHHHHHHhhccCChhHHHHHHHHHHHHHHhCcccH--------HHHHHHHHHHHHhhhccccccCCCCCcc
Q 001839 310 SISS-----VFKEFQDYIRDPDRRFAADTVAAIGLCARKLPKMA--------NTCVEGLLALIRQELLTSDIESGNGEAD 376 (1007)
Q Consensus 310 Ni~~-----IL~EL~~Yv~d~D~~fv~~aI~AIG~~A~k~p~~a--------~~cl~~Ll~LLs~~~~~s~~~~~~~~~~ 376 (1007)
+... ++.-|..++++.+.+-++.|..++..++..+|..- .-++.-|+++|+.. +.+..
T Consensus 727 ~~~ei~~~~~I~~Lv~lLr~G~~~~k~~Aa~AL~~L~~~~~~~~~~~~~~~~~g~v~~l~~~L~~~---------~~~~~ 797 (2102)
T PLN03200 727 VAAEALAEDIILPLTRVLREGTLEGKRNAARALAQLLKHFPVDDVLKDSVQCRGTVLALVDLLNST---------DLDSS 797 (2102)
T ss_pred HHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHhCCChhHHHHHHHHHhCcHHHHHHHHhcC---------Ccchh
Confidence 3333 34567889999899999999999999999988322 13466777777742 44444
Q ss_pred chhhHHHHHHHHHHc-------CC---------chHHHHHHhhhccCchhhHHhhhhhccccccCCCCccccHH------
Q 001839 377 VLIQSIISIKSIIKQ-------DP---------SCHEKLFRSLDSIKVPEARVMIIWMVGEYSSVGVKIPRMLT------ 434 (1007)
Q Consensus 377 vV~EsVvvIk~Llq~-------~P---------~~~~~L~~~ld~I~~p~ArAsIIWLLGEY~~~~e~ip~ia~------ 434 (1007)
.+.|++.++-.+.|. +| ...+.|++++ ....|...-..|-++...|.. -|.+..
T Consensus 798 ~~~~al~~l~~l~~~~~~~~~~~~~~~~~~e~p~~l~~l~~~l-~~~~p~~~~kai~il~~~~~~---~~~~~~~~~~~~ 873 (2102)
T PLN03200 798 ATSEALEALALLARTKGGANFSHPPWAVLAEVPSSLEPLVRCL-AEGHPLVQDKAIEILSRLCRD---QPVVLGDLIANA 873 (2102)
T ss_pred hHHHHHHHHHHHHhhcccCCCCCCchhhHHhccCchHHHHHHH-HcCChHHHHHHHHHHHHHhcc---ChhHHHHHHhcc
Confidence 566788888888884 12 2223366666 445565555556666666541 122222
Q ss_pred -HHHHHHHHhhccC-cHHHH---HHHHHHHHHHhhhcCCCC---hHHHHHHHHHHHHHHcc
Q 001839 435 -TVLKYLAWCFKSE-AVETK---LQILNTTIKVLLCAKGGD---MWTITRLFSYLLELAEC 487 (1007)
Q Consensus 435 -DvLR~l~k~F~~E-~~~VK---lqILtlaaKL~~~~p~e~---~~~i~~L~qyvLeLak~ 487 (1007)
..+.-++++..+. +.+|| ..+|-.++|-.....-+. ....+.|++.+..+-+.
T Consensus 874 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 934 (2102)
T PLN03200 874 SKCISSLADRIINSSSLEVKIGGTALLICAAKEHRQLVMEALDESGYLKLLIQALVDMLKQ 934 (2102)
T ss_pred cchHHHHHHHHhhcCCceEEecchhhhhhhhhhhHHHHHHHHHhhccHHHHHHHHHHHHhc
Confidence 2234444444332 33454 457777777644321110 11234455555555444
No 26
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.45 E-value=0.85 Score=55.69 Aligned_cols=405 Identities=16% Similarity=0.151 Sum_probs=226.6
Q ss_pred hhhhHHHHHHHHhhcCCCChhHHHHHHHHHHHHhhcCch---hhHhhHHHHHHHHhcCCChhHHHHHHHHHHH-----hC
Q 001839 7 HVISPLVLVAVGKCARDPSVFVRKCAANALPKLHELRQE---EITSAIEEIVGILLNDRSPGVVGAAAAAFAS-----IC 78 (1007)
Q Consensus 7 p~I~piv~~aIkk~~~D~SPYVRKtAA~AI~Kly~ldpe---~~~~~LieiL~~LL~D~~p~VvgsAv~Af~E-----Ic 78 (1007)
.+++|++++-+|+.+....+.||-++++|+.-+-.=.-+ .+.+.|+..+-.+|.|+-|+|-.=+--.+.. ++
T Consensus 388 ~elL~~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGcM~g~~p~LpeLip~l~~~L~DKkplVRsITCWTLsRys~wv~~ 467 (885)
T KOG2023|consen 388 DELLPILLPLLKEHLSSEEWKVREAGVLALGAIAEGCMQGFVPHLPELIPFLLSLLDDKKPLVRSITCWTLSRYSKWVVQ 467 (885)
T ss_pred HHHHHHHHHHHHHHcCcchhhhhhhhHHHHHHHHHHHhhhcccchHHHHHHHHHHhccCccceeeeeeeeHhhhhhhHhc
Confidence 678999999999999999999999999999877653211 1567899999999999999996544333322 23
Q ss_pred CCCccchHHHHHHHHHhCCCCChhhHHHHHHHHHHhhhhcccccchhhhhhhhhcccCCCcccccccccccccCCCCCCc
Q 001839 79 PNNFTLIGRNYRNLCQILPDVEEWGQILLIEILLRYVVASHGLVKESIMSSLLCIESSHSEKDVFDVNVALEDNGIPSRT 158 (1007)
Q Consensus 79 P~rldLihk~yrkLc~~L~d~dEWgQv~iL~lL~rY~r~~~~~~kp~~~f~~~~~~~~~~~~~~~~~~~~l~~q~~~~~~ 158 (1007)
-.+-..+.+....|++.+.|-+-|-|-.....++.+- |+.
T Consensus 468 ~~~~~~f~pvL~~ll~~llD~NK~VQEAAcsAfAtle------------------------E~A---------------- 507 (885)
T KOG2023|consen 468 DSRDEYFKPVLEGLLRRLLDSNKKVQEAACSAFATLE------------------------EEA---------------- 507 (885)
T ss_pred CChHhhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHH------------------------Hhc----------------
Confidence 3455667777778888888889998887766655432 000
Q ss_pred cchhhhhhhccccccccccccccCCCcccccccccCccccCCCCChhHHHHHHhhc---ccccCCChHHHHHHHHHHH--
Q 001839 159 YDSELVNLVSRSYIEGLGEYLTRSSDTNARSSDLNGARFTSGKTNDDVKLLLQCTS---PLLWSHNSAVVLAAAGVHW-- 233 (1007)
Q Consensus 159 ~~~~~~~~~~~~~~~~~de~~~~~~~~~~~~~~~~~~~~~~~~~D~D~~lLL~~~~---pLLqS~NsAVVlaaa~l~~-- 233 (1007)
.++ +=|-+.-+|+.+. ---|++|--+++-|+..+-
T Consensus 508 -~~e---------------------------------------LVp~l~~IL~~l~~af~kYQ~KNLlILYDAIgtlAds 547 (885)
T KOG2023|consen 508 -GEE---------------------------------------LVPYLEYILDQLVFAFGKYQKKNLLILYDAIGTLADS 547 (885)
T ss_pred -cch---------------------------------------hHHHHHHHHHHHHHHHHHHhhcceehHHHHHHHHHHH
Confidence 011 1111222232222 2347788888898888752
Q ss_pred ---hcCCHHHHHHHHHHHHH---hhcCCCCchhhHHHHHHHHHHHCCCccccccceeeec---------------cCCCH
Q 001839 234 ---IMSPKEDVKRIVKPLLF---ILRSSGASKYVVLCNIQVFAKALPHLFVPHYEDFFVS---------------SSDSY 292 (1007)
Q Consensus 234 ---~lap~~~l~~~~~pLv~---LL~S~~eiqyvvL~~I~~i~~~~p~lF~~~l~~Ffv~---------------~~Dp~ 292 (1007)
++..+.+++.+..||+. +|+.+.---|-.|.++..++..-..-|.||..-.|-| ..||+
T Consensus 548 vg~~Ln~~~YiqiLmPPLi~KW~~lsd~DKdLfPLLEClSsia~AL~~gF~P~~~~Vy~Rc~~il~~t~q~~~~~~~~~~ 627 (885)
T KOG2023|consen 548 VGHALNKPAYIQILMPPLIEKWELLSDSDKDLFPLLECLSSIASALGVGFLPYAQPVYQRCFRILQKTLQLLAKVQQDPT 627 (885)
T ss_pred HHHhcCcHHHHHHhccHHHHHHHhcCcccchHHHHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHHHHHhccCCcc
Confidence 66677889999999983 4544333345667777777776666666654322211 12221
Q ss_pred H------HHHHHHHHHHhccC--CCCHHH------HHHHHHHhhccCChhHHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Q 001839 293 Q------SKALKLEILSSIVT--ESSISS------VFKEFQDYIRDPDRRFAADTVAAIGLCARKLPKMANTCVEGLLAL 358 (1007)
Q Consensus 293 ~------IK~lKLeIL~~Lan--e~Ni~~------IL~EL~~Yv~d~D~~fv~~aI~AIG~~A~k~p~~a~~cl~~Ll~L 358 (1007)
+ .-...||++.-|+. .+.++. |++=|.....|.-++++.-+..-+|.++...++-..-|+.-++.+
T Consensus 628 ~~~pdkdfiI~sLDL~SGLaegLg~~ie~Lva~snl~~lll~C~~D~~peVRQS~FALLGDltk~c~~~v~p~~~~fl~~ 707 (885)
T KOG2023|consen 628 VEAPDKDFIIVSLDLLSGLAEGLGSHIEPLVAQSNLLDLLLQCLQDEVPEVRQSAFALLGDLTKACFEHVIPNLADFLPI 707 (885)
T ss_pred ccCCCcceEEEeHHHHhHHHHHhhhchHHHhhhccHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHhccchHHHHHHH
Confidence 1 11223555555442 122221 333345566777778888888889988876554444455555555
Q ss_pred HHhhhccccccCCCCCc-cchhhHHHHHHHHH-HcCCchHHH----HHHhhhccCchh-------hHHhhhhhccccccC
Q 001839 359 IRQELLTSDIESGNGEA-DVLIQSIISIKSII-KQDPSCHEK----LFRSLDSIKVPE-------ARVMIIWMVGEYSSV 425 (1007)
Q Consensus 359 Ls~~~~~s~~~~~~~~~-~vV~EsVvvIk~Ll-q~~P~~~~~----L~~~ld~I~~p~-------ArAsIIWLLGEY~~~ 425 (1007)
|-.+. +.+. .+..-++..|-.|- +..++.+.. +-.++-.|+.+. -.|--|=-+|-+|-.
T Consensus 708 lg~Nl--------~~~~isv~nNA~WAiGeia~k~g~~~~~~v~~vl~~L~~iin~~~~~~tllENtAITIGrLg~~~Pe 779 (885)
T KOG2023|consen 708 LGANL--------NPENISVCNNAIWAIGEIALKMGLKMKQYVSPVLEDLITIINRQNTPKTLLENTAITIGRLGYICPE 779 (885)
T ss_pred HhhcC--------ChhhchHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHHHHhcccCchHHHHHhhhhhhhhhhccCHH
Confidence 54321 1111 13333444444332 222221111 222222223221 112224445555531
Q ss_pred CCCccccHHHHHHHHHHhhccC-cHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHccCCChhHHhHHHHHHHHc
Q 001839 426 GVKIPRMLTTVLKYLAWCFKSE-AVETKLQILNTTIKVLLCAKGGDMWTITRLFSYLLELAECDLNYDVRDRARFFKKLF 504 (1007)
Q Consensus 426 ~e~ip~ia~DvLR~l~k~F~~E-~~~VKlqILtlaaKL~~~~p~e~~~~i~~L~qyvLeLak~D~n~DVRDRArfy~~LL 504 (1007)
+..|. .+.+.|.-..+..+- +++.|-....-.+++.-.+|... +..+.-.+.-.|.+. |+. -|=.-+++++|
T Consensus 780 -~vAp~-l~~f~~pWc~sl~~i~DneEK~sAFrG~c~mi~vNp~~v---v~~~~f~c~aiAsw~-np~-~~l~~~f~kiL 852 (885)
T KOG2023|consen 780 -EVAPH-LDSFMRPWCTSLRNIDDNEEKESAFRGLCNMINVNPSGV---VSSFIFICDAIASWS-NPE-DDLRDEFYKIL 852 (885)
T ss_pred -hcchh-HHHHHHHHHHHhcccccchhHHHHHHHHHHheeeCchhh---hhhhHHHHHHHhccc-ChH-HHHHHHHHHHH
Confidence 12232 344444333333322 34566666677777777788643 333333344445555 554 44444666676
Q ss_pred cC
Q 001839 505 SH 506 (1007)
Q Consensus 505 ~~ 506 (1007)
.+
T Consensus 853 ~g 854 (885)
T KOG2023|consen 853 QG 854 (885)
T ss_pred HH
Confidence 54
No 27
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=96.38 E-value=0.016 Score=52.21 Aligned_cols=83 Identities=30% Similarity=0.224 Sum_probs=60.4
Q ss_pred HHHhhc-CCCChhHHHHHHHHHHHHhhcCchhhHhhHHHHHHHHhcCCChhHHHHHHHHHHHhCCCCccchHHHHHHHHH
Q 001839 16 AVGKCA-RDPSVFVRKCAANALPKLHELRQEEITSAIEEIVGILLNDRSPGVVGAAAAAFASICPNNFTLIGRNYRNLCQ 94 (1007)
Q Consensus 16 aIkk~~-~D~SPYVRKtAA~AI~Kly~ldpe~~~~~LieiL~~LL~D~~p~VvgsAv~Af~EIcP~rldLihk~yrkLc~ 94 (1007)
++.+.+ .|++|+||..|+.++.++ .. +..++.|..+|+|.++.|..+|+.++..+- -+.....|++
T Consensus 3 ~L~~~l~~~~~~~vr~~a~~~L~~~---~~----~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~------~~~~~~~L~~ 69 (88)
T PF13646_consen 3 ALLQLLQNDPDPQVRAEAARALGEL---GD----PEAIPALIELLKDEDPMVRRAAARALGRIG------DPEAIPALIK 69 (88)
T ss_dssp HHHHHHHTSSSHHHHHHHHHHHHCC---TH----HHHHHHHHHHHTSSSHHHHHHHHHHHHCCH------HHHTHHHHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHc---CC----HhHHHHHHHHHcCCCHHHHHHHHHHHHHhC------CHHHHHHHHH
Confidence 444555 899999999999999943 22 345667777889999999999999999873 2345677888
Q ss_pred hCCCCChhh-HHHHHHHH
Q 001839 95 ILPDVEEWG-QILLIEIL 111 (1007)
Q Consensus 95 ~L~d~dEWg-Qv~iL~lL 111 (1007)
.+.+-+.|. +-..+..|
T Consensus 70 ~l~~~~~~~vr~~a~~aL 87 (88)
T PF13646_consen 70 LLQDDDDEVVREAAAEAL 87 (88)
T ss_dssp HHTC-SSHHHHHHHHHHH
T ss_pred HHcCCCcHHHHHHHHhhc
Confidence 887766665 44444443
No 28
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.18 E-value=1.6 Score=56.17 Aligned_cols=255 Identities=18% Similarity=0.215 Sum_probs=149.4
Q ss_pred HHHHHhhcCCCChhHHHHHHHHHHHHhhcCc---hh------hHhhHHHHHHHHhcCCChhHHHHHHHHHHHhCCCCccc
Q 001839 14 LVAVGKCARDPSVFVRKCAANALPKLHELRQ---EE------ITSAIEEIVGILLNDRSPGVVGAAAAAFASICPNNFTL 84 (1007)
Q Consensus 14 ~~aIkk~~~D~SPYVRKtAA~AI~Kly~ldp---e~------~~~~LieiL~~LL~D~~p~VvgsAv~Af~EIcP~rldL 84 (1007)
..-..+|++|.|--||=+|+-|+.-+....+ +. -.+.++.++..++.+.+..++..++.+|.|+.-..-.+
T Consensus 161 ~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk~ 240 (1075)
T KOG2171|consen 161 LRLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESEPKL 240 (1075)
T ss_pred HHHHHHhccCCcchHHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhchHH
Confidence 3345689999987799999999988776543 11 22446677888889999999999999999997655567
Q ss_pred hHHHHHHHHHhC------CCCChhhHHHHHHHHHHhhhhcccccchhhhhhhhhcccCCCcccccccccccccCCCCCCc
Q 001839 85 IGRNYRNLCQIL------PDVEEWGQILLIEILLRYVVASHGLVKESIMSSLLCIESSHSEKDVFDVNVALEDNGIPSRT 158 (1007)
Q Consensus 85 ihk~yrkLc~~L------~d~dEWgQv~iL~lL~rY~r~~~~~~kp~~~f~~~~~~~~~~~~~~~~~~~~l~~q~~~~~~ 158 (1007)
+.+++-.++..- +++++=-....|++|.-|++.- |. +++-.. . +..+-
T Consensus 241 l~~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~A-----p~-----~~k~~~----------~-~~~~l----- 294 (1075)
T KOG2171|consen 241 LRPHLSQIIQFSLEIAKNKELENSIRHLALEFLVSLSEYA-----PA-----MCKKLA----------L-LGHTL----- 294 (1075)
T ss_pred HHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhh-----HH-----Hhhhch----------h-hhccH-----
Confidence 777665554433 4567777777888876554320 00 000000 0 00000
Q ss_pred cchhhhhhhccccccccccccccCCCcccccccccCccccCCCCChhHHHHHHhhcccccCCCh-HHHHHHHHHHHhcCC
Q 001839 159 YDSELVNLVSRSYIEGLGEYLTRSSDTNARSSDLNGARFTSGKTNDDVKLLLQCTSPLLWSHNS-AVVLAAAGVHWIMSP 237 (1007)
Q Consensus 159 ~~~~~~~~~~~~~~~~~de~~~~~~~~~~~~~~~~~~~~~~~~~D~D~~lLL~~~~pLLqS~Ns-AVVlaaa~l~~~lap 237 (1007)
.-.-..-|.- ....+++.. +| ..|.|- ...|+ +-.=+.-++-+++.|
T Consensus 295 v~~~l~~mte---~~~D~ew~~--~d----------------~~ded~-----------~~~~~~~A~~~lDrlA~~L~g 342 (1075)
T KOG2171|consen 295 VPVLLAMMTE---EEDDDEWSN--ED----------------DLDEDD-----------EETPYRAAEQALDRLALHLGG 342 (1075)
T ss_pred HHHHHHhcCC---cccchhhcc--cc----------------cccccc-----------ccCcHHHHHHHHHHHHhcCCh
Confidence 0000000000 000011110 00 111111 01121 112222345567777
Q ss_pred HHHHHHHHHHHHHhhcC-CCCchhhHHHHHHHHHHHCCCccccccceeeeccCCCHHHHHHHHHHHHhccCCCCHHHHHH
Q 001839 238 KEDVKRIVKPLLFILRS-SGASKYVVLCNIQVFAKALPHLFVPHYEDFFVSSSDSYQSKALKLEILSSIVTESSISSVFK 316 (1007)
Q Consensus 238 ~~~l~~~~~pLv~LL~S-~~eiqyvvL~~I~~i~~~~p~lF~~~l~~Ffv~~~Dp~~IK~lKLeIL~~Lane~Ni~~IL~ 316 (1007)
+..+..+...+-.+|.| +.--|..+|-.|..++.-+++...+ |+..|+.
T Consensus 343 ~~v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~------------------------------~l~~Il~ 392 (1075)
T KOG2171|consen 343 KQVLPPLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIG------------------------------NLPKILP 392 (1075)
T ss_pred hhehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHH------------------------------HHHHHHH
Confidence 76666666667777766 4556788888888887665544332 3455666
Q ss_pred HHHHhhccCChhHHHHHHHHHHHHHHhCcc-cHHHHHHHHH
Q 001839 317 EFQDYIRDPDRRFAADTVAAIGLCARKLPK-MANTCVEGLL 356 (1007)
Q Consensus 317 EL~~Yv~d~D~~fv~~aI~AIG~~A~k~p~-~a~~cl~~Ll 356 (1007)
=...++.|+++.++-+|..|||+++..++. +...+=..+.
T Consensus 393 ~Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk~~~e~l~ 433 (1075)
T KOG2171|consen 393 IVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQKKHHERLP 433 (1075)
T ss_pred HHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhcc
Confidence 667799999999999999999999998864 4444444333
No 29
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.00 E-value=1.5 Score=54.17 Aligned_cols=240 Identities=15% Similarity=0.155 Sum_probs=170.1
Q ss_pred hhhHHHHHHHHhhcCCCChhHHHHHHHHHHHHhhcCchhhHhhHHHHHHHHhcCCChhHHHHHHHHHHHhCCCCccchHH
Q 001839 8 VISPLVLVAVGKCARDPSVFVRKCAANALPKLHELRQEEITSAIEEIVGILLNDRSPGVVGAAAAAFASICPNNFTLIGR 87 (1007)
Q Consensus 8 ~I~piv~~aIkk~~~D~SPYVRKtAA~AI~Kly~ldpe~~~~~LieiL~~LL~D~~p~VvgsAv~Af~EIcP~rldLihk 87 (1007)
.+.-+.+.-++|-+...+-|==--|.-|+. +| .-| +-..+|..-+-.||+-+-|.|--=|+.+++.||-.--+-+.+
T Consensus 105 dvlmL~tn~~rkdl~S~n~ye~giAL~GLS-~f-vTp-dLARDLa~Dv~tLL~sskpYvRKkAIl~lykvFLkYPeAlr~ 181 (877)
T KOG1059|consen 105 DVLMLTTNLLRKDLNSSNVYEVGLALSGLS-CI-VTP-DLARDLADDVFTLLNSSKPYVRKKAILLLYKVFLKYPEALRP 181 (877)
T ss_pred cHHHHHHHHHHHHhccCccchhhheecccc-cc-cCc-hhhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhhHhHhh
Confidence 345566677888888555554444444433 22 255 445566666678999999999999999999999554556889
Q ss_pred HHHHHHHhCCCCChhhHHHHHHHHHHhhhhcccccchhhhhhhhhcccCCCcccccccccccccCCCCCCccchhhhhhh
Q 001839 88 NYRNLCQILPDVEEWGQILLIEILLRYVVASHGLVKESIMSSLLCIESSHSEKDVFDVNVALEDNGIPSRTYDSELVNLV 167 (1007)
Q Consensus 88 ~yrkLc~~L~d~dEWgQv~iL~lL~rY~r~~~~~~kp~~~f~~~~~~~~~~~~~~~~~~~~l~~q~~~~~~~~~~~~~~~ 167 (1007)
+|.+|...|.|-|+=-|....+++-..+|.. |.
T Consensus 182 ~FprL~EkLeDpDp~V~SAAV~VICELArKn-----Pk------------------------------------------ 214 (877)
T KOG1059|consen 182 CFPRLVEKLEDPDPSVVSAAVSVICELARKN-----PQ------------------------------------------ 214 (877)
T ss_pred hHHHHHHhccCCCchHHHHHHHHHHHHHhhC-----Cc------------------------------------------
Confidence 9999999999999999999999998888632 10
Q ss_pred ccccccccccccccCCCcccccccccCccccCCCCChhHHHHHHhhcccccCCChHHHHHHHHHHHhcCCH--HHHHHHH
Q 001839 168 SRSYIEGLGEYLTRSSDTNARSSDLNGARFTSGKTNDDVKLLLQCTSPLLWSHNSAVVLAAAGVHWIMSPK--EDVKRIV 245 (1007)
Q Consensus 168 ~~~~~~~~de~~~~~~~~~~~~~~~~~~~~~~~~~D~D~~lLL~~~~pLLqS~NsAVVlaaa~l~~~lap~--~~l~~~~ 245 (1007)
.|+ .+.|+...| +-.|+|.=|..-.+++|-.++|. .--++++
T Consensus 215 ---------nyL---------------------~LAP~ffkl------lttSsNNWmLIKiiKLF~aLtplEPRLgKKLi 258 (877)
T KOG1059|consen 215 ---------NYL---------------------QLAPLFYKL------LVTSSNNWVLIKLLKLFAALTPLEPRLGKKLI 258 (877)
T ss_pred ---------ccc---------------------cccHHHHHH------HhccCCCeehHHHHHHHhhccccCchhhhhhh
Confidence 011 133443333 23578888999999999999883 4457789
Q ss_pred HHHHHhhcCCCCchhhHHHHHHHHHHHCCCccccccceeeeccCCCHHHHHHHHHHHHhccCCCCHHHHHHHHHHhhccC
Q 001839 246 KPLLFILRSSGASKYVVLCNIQVFAKALPHLFVPHYEDFFVSSSDSYQSKALKLEILSSIVTESSISSVFKEFQDYIRDP 325 (1007)
Q Consensus 246 ~pLv~LL~S~~eiqyvvL~~I~~i~~~~p~lF~~~l~~Ffv~~~Dp~~IK~lKLeIL~~Lane~Ni~~IL~EL~~Yv~d~ 325 (1007)
.||.-|+++-.. .-++..+|.+++.. .+-..+ +++ ...++.-+..|..++.+.
T Consensus 259 eplt~li~sT~A-mSLlYECvNTVVa~--s~s~g~-------~d~-----------------~asiqLCvqKLr~fieds 311 (877)
T KOG1059|consen 259 EPITELMESTVA-MSLLYECVNTVVAV--SMSSGM-------SDH-----------------SASIQLCVQKLRIFIEDS 311 (877)
T ss_pred hHHHHHHHhhHH-HHHHHHHHHHheee--hhccCC-------CCc-----------------HHHHHHHHHHHhhhhhcC
Confidence 999999986433 34566778777654 222222 111 122334466777788888
Q ss_pred ChhHHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Q 001839 326 DRRFAADTVAAIGLCARKLPKMANTCVEGLLALIR 360 (1007)
Q Consensus 326 D~~fv~~aI~AIG~~A~k~p~~a~~cl~~Ll~LLs 360 (1007)
|..++--...|+++++...|.......+.++++|.
T Consensus 312 DqNLKYlgLlam~KI~ktHp~~Vqa~kdlIlrcL~ 346 (877)
T KOG1059|consen 312 DQNLKYLGLLAMSKILKTHPKAVQAHKDLILRCLD 346 (877)
T ss_pred CccHHHHHHHHHHHHhhhCHHHHHHhHHHHHHHhc
Confidence 88888888999999999999988888888888886
No 30
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=95.78 E-value=0.011 Score=43.96 Aligned_cols=29 Identities=34% Similarity=0.374 Sum_probs=24.6
Q ss_pred HHHHHHhhcCCCChhHHHHHHHHHHHHhh
Q 001839 13 VLVAVGKCARDPSVFVRKCAANALPKLHE 41 (1007)
Q Consensus 13 v~~aIkk~~~D~SPYVRKtAA~AI~Kly~ 41 (1007)
+++.+.+++.|++|-||++|+.|+.++.+
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 45677799999999999999999999875
No 31
>PF14764 SPG48: AP-5 complex subunit, vesicle trafficking
Probab=95.77 E-value=0.18 Score=59.76 Aligned_cols=121 Identities=17% Similarity=0.184 Sum_probs=68.9
Q ss_pred HHHHHHcCCchHHH----HHHhhhccCchhhHH----hhhhhccccccCCCCccccHHHHHHHHHHhh----------c-
Q 001839 385 IKSIIKQDPSCHEK----LFRSLDSIKVPEARV----MIIWMVGEYSSVGVKIPRMLTTVLKYLAWCF----------K- 445 (1007)
Q Consensus 385 Ik~Llq~~P~~~~~----L~~~ld~I~~p~ArA----sIIWLLGEY~~~~e~ip~ia~DvLR~l~k~F----------~- 445 (1007)
+-.+.+++|..... +.+.+....+..+|+ .++|+||||+...- -..+-.|+++.+.+.. .
T Consensus 292 ll~lfk~~PsLvv~l~~~ilef~g~~~~~~~k~~l~~hlvWaIGEy~s~~~-d~rct~~~i~~~fE~LE~llyE~~~~~~ 370 (459)
T PF14764_consen 292 LLALFKRHPSLVVELSKEILEFLGSASNIHSKEELFTHLVWAIGEYLSVSY-DRRCTVEQINEFFEALEALLYEVTQSRR 370 (459)
T ss_pred HHHHHHhCcHHHHHhHHHHHHHhcccccccchhHHHHHHHHHHhccccccc-CCccCHHHHHHHHHHHHHHHHHHhhccc
Confidence 44566677775443 344444444344455 45899999986421 1222334444332211 1
Q ss_pred -------cCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHc-------cC--CChhHHhHHHHHHHHccCC
Q 001839 446 -------SEAVETKLQILNTTIKVLLCAKGGDMWTITRLFSYLLELAE-------CD--LNYDVRDRARFFKKLFSHN 507 (1007)
Q Consensus 446 -------~E~~~VKlqILtlaaKL~~~~p~e~~~~i~~L~qyvLeLak-------~D--~n~DVRDRArfy~~LL~~~ 507 (1007)
.....+-.-++|+.+||-.+.++-.. ++...+..+-.++. ++ .+..|..||..|.+||+.+
T Consensus 371 ~~~~~~~~~~~rl~~~lmt~laKLAsr~~dl~p-Rv~l~LsK~~~~~~s~~~~~~~~~~~~~~v~~RA~el~~LLk~P 447 (459)
T PF14764_consen 371 DPSASRPSSQPRLMTVLMTALAKLASRSQDLIP-RVSLCLSKMRTLVQSPAVSSVYSEEDDEAVLTRATELLNLLKMP 447 (459)
T ss_pred cccccCCCCchhHHHHHHHHHHHHHHhCHhhhH-HHHHHHHHHHHhccCCccccccCcccHHHHHHHHHHHHHHhcCc
Confidence 22345667799999999988875322 33333333222111 34 3789999999999999863
No 32
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.59 E-value=9.7 Score=49.53 Aligned_cols=398 Identities=13% Similarity=0.133 Sum_probs=221.4
Q ss_pred cCCCChhHHHHHHHHHHHHhhcCchhhHhhHHHHHHHHhcCCChhHHHHHHHHHHHhC---CCCccchHHHHHHHHHhC-
Q 001839 21 ARDPSVFVRKCAANALPKLHELRQEEITSAIEEIVGILLNDRSPGVVGAAAAAFASIC---PNNFTLIGRNYRNLCQIL- 96 (1007)
Q Consensus 21 ~~D~SPYVRKtAA~AI~Kly~ldpe~~~~~LieiL~~LL~D~~p~VvgsAv~Af~EIc---P~rldLihk~yrkLc~~L- 96 (1007)
..-+.|-|||.-|-.|+-+.+.+=+++=++|...|-..+++.++.--=+|+..|..+- ++. ..+|.+-|.+++
T Consensus 89 ~~E~~~~vr~k~~dviAeia~~~l~e~WPell~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~---~~~~~~~l~~lf~ 165 (1075)
T KOG2171|consen 89 QSETEPSVRHKLADVIAEIARNDLPEKWPELLQFLFQSTKSPNPSLRESALLILSSLPETFGNT---LQPHLDDLLRLFS 165 (1075)
T ss_pred HhccchHHHHHHHHHHHHHHHhccccchHHHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhccc---cchhHHHHHHHHH
Confidence 4567899999999999999986432456677777777888999999899998887662 333 223444444444
Q ss_pred ---CCCChhhHHHHHHHHHHhhhhcccccchhhhhhhhhcccCCCcccccccccccccCCCCCCccchhhhhhhcccccc
Q 001839 97 ---PDVEEWGQILLIEILLRYVVASHGLVKESIMSSLLCIESSHSEKDVFDVNVALEDNGIPSRTYDSELVNLVSRSYIE 173 (1007)
Q Consensus 97 ---~d~dEWgQv~iL~lL~rY~r~~~~~~kp~~~f~~~~~~~~~~~~~~~~~~~~l~~q~~~~~~~~~~~~~~~~~~~~~ 173 (1007)
.|.+-=-.+.-++.+..|+... .+ +.++ .+.|.
T Consensus 166 q~~~d~s~~vr~~a~rA~~a~~~~~--------------~~----~~~~-------------------------~~~~~- 201 (1075)
T KOG2171|consen 166 QTMTDPSSPVRVAAVRALGAFAEYL--------------EN----NKSE-------------------------VDKFR- 201 (1075)
T ss_pred HhccCCcchHHHHHHHHHHHHHHHh--------------cc----chHH-------------------------HHHHH-
Confidence 3333224455555555554310 00 0000 00000
Q ss_pred ccccccccCCCcccccccccCccccCCCCChhHHHHHHhhcccccCCChHHHHHHHHHHHhc---CCH---HHHHHHHHH
Q 001839 174 GLGEYLTRSSDTNARSSDLNGARFTSGKTNDDVKLLLQCTSPLLWSHNSAVVLAAAGVHWIM---SPK---EDVKRIVKP 247 (1007)
Q Consensus 174 ~~de~~~~~~~~~~~~~~~~~~~~~~~~~D~D~~lLL~~~~pLLqS~NsAVVlaaa~l~~~l---ap~---~~l~~~~~p 247 (1007)
+=+=-+|+.+.+.++..+..+.-.+-.++..+ .|+ ..+..++.-
T Consensus 202 ------------------------------~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk~l~~~l~~ii~~ 251 (1075)
T KOG2171|consen 202 ------------------------------DLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESEPKLLRPHLSQIIQF 251 (1075)
T ss_pred ------------------------------HHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhchHHHHHHHHHHHHH
Confidence 00012456666666666664433343443332 332 233444443
Q ss_pred HHHhhcC---CCCchhhHHHHHHHHHHHCCCccccc---cceeee------------------------ccCCCHHHHHH
Q 001839 248 LLFILRS---SGASKYVVLCNIQVFAKALPHLFVPH---YEDFFV------------------------SSSDSYQSKAL 297 (1007)
Q Consensus 248 Lv~LL~S---~~eiqyvvL~~I~~i~~~~p~lF~~~---l~~Ffv------------------------~~~Dp~~IK~l 297 (1007)
-+.+.++ ++.+|..+|..|..++...|.+...+ ....+. ..++|..+...
T Consensus 252 ~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~ 331 (1075)
T KOG2171|consen 252 SLEIAKNKELENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQ 331 (1075)
T ss_pred HHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhccccccccccccCcHHHHHH
Confidence 3444444 46689999998888776655332211 111110 01225566667
Q ss_pred HHHHHHh-ccCCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHHHHhCcccHH----HHHHHHHHHHHhhhccccccCCC
Q 001839 298 KLEILSS-IVTESSISSVFKEFQDYIRDPDRRFAADTVAAIGLCARKLPKMAN----TCVEGLLALIRQELLTSDIESGN 372 (1007)
Q Consensus 298 KLeIL~~-Lane~Ni~~IL~EL~~Yv~d~D~~fv~~aI~AIG~~A~k~p~~a~----~cl~~Ll~LLs~~~~~s~~~~~~ 372 (1007)
.||.|.. |--+.=+..++.-+..++.+.+-..+.++..||+.++.--++... .++...+..|+ +
T Consensus 332 ~lDrlA~~L~g~~v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~~Il~~Vl~~l~-----------D 400 (1075)
T KOG2171|consen 332 ALDRLALHLGGKQVLPPLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNLPKILPIVLNGLN-----------D 400 (1075)
T ss_pred HHHHHHhcCChhhehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcC-----------C
Confidence 7776653 333444577888899999999999999999999998876655444 44444444443 1
Q ss_pred CCccchhh-HHHHHHHHHHc-CCchHH----H----HHHhhhccCchh--hH-HhhhhhccccccCCCCccccHHHHHH-
Q 001839 373 GEADVLIQ-SIISIKSIIKQ-DPSCHE----K----LFRSLDSIKVPE--AR-VMIIWMVGEYSSVGVKIPRMLTTVLK- 438 (1007)
Q Consensus 373 ~~~~vV~E-sVvvIk~Llq~-~P~~~~----~----L~~~ld~I~~p~--Ar-AsIIWLLGEY~~~~e~ip~ia~DvLR- 438 (1007)
.+. .|.. +...|-++=.. .|...+ . |+..+|.-..+. +. |+-+-=+.|.|..-...|| .+.++.
T Consensus 401 php-rVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pY-Ld~lm~~ 478 (1075)
T KOG2171|consen 401 PHP-RVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPY-LDGLMEK 478 (1075)
T ss_pred CCH-HHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHH-HHHHHHH
Confidence 222 3443 44444443222 233222 2 333444444432 22 2223334466643123455 566666
Q ss_pred HHHHhhccCcHHHHHHHHHHHHHHhhhcCCCC---hHHHHHHHHHHHHHHccCCChhHHhHHHHHHHHccCCC
Q 001839 439 YLAWCFKSEAVETKLQILNTTIKVLLCAKGGD---MWTITRLFSYLLELAECDLNYDVRDRARFFKKLFSHNL 508 (1007)
Q Consensus 439 ~l~k~F~~E~~~VKlqILtlaaKL~~~~p~e~---~~~i~~L~qyvLeLak~D~n~DVRDRArfy~~LL~~~~ 508 (1007)
++.---......||-|++|+.+-+.......- .+++-.++..+|..+..+....+|-....-..++...+
T Consensus 479 ~l~~L~~~~~~~v~e~vvtaIasvA~AA~~~F~pY~d~~Mp~L~~~L~n~~~~d~r~LrgktmEcisli~~AV 551 (1075)
T KOG2171|consen 479 KLLLLLQSSKPYVQEQAVTAIASVADAAQEKFIPYFDRLMPLLKNFLQNADDKDLRELRGKTMECLSLIARAV 551 (1075)
T ss_pred HHHHHhcCCchhHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHHHHhCCCchhhHHHHhhHHHHHHHHHHHh
Confidence 33223345678899999999988865443211 12333445556666665667888888877777776554
No 33
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=95.46 E-value=0.83 Score=57.56 Aligned_cols=171 Identities=15% Similarity=0.210 Sum_probs=101.7
Q ss_pred CChhHHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhhhccccccCCC-----------------C---CccchhhHHH
Q 001839 325 PDRRFAADTVAAIGLCARKLPK-MANTCVEGLLALIRQELLTSDIESGN-----------------G---EADVLIQSII 383 (1007)
Q Consensus 325 ~D~~fv~~aI~AIG~~A~k~p~-~a~~cl~~Ll~LLs~~~~~s~~~~~~-----------------~---~~~vV~EsVv 383 (1007)
.+..+..+-+.++|.|++.+|. -....+..|+.-+..+..+ .+|.. + ...+-+++|+
T Consensus 876 ~~~~l~~~y~v~~~~~~ql~P~ar~~K~~~lLv~s~~~gssD--a~htp~tq~se~p~sqp~~~v~g~~~~~~vra~~vv 953 (1529)
T KOG0413|consen 876 QERLLCTAYNVAFSYSPQLVPHARLGKTLSLLVNSTENGSSD--APHTPPTQLSEVPSSQPSSKVEGAMFSDKVRAVGVV 953 (1529)
T ss_pred HHHHHHHHhhccccccceeccchhccceeeeeeeeeccCCCC--CCCCCccchhhCcccCCCccccccccchHHHHHHHH
Confidence 3444555556678899999993 2334444444433322211 11110 0 0012233455
Q ss_pred HHHHHHHcCCchHHH----HHHhhhccCchhhHHhhhhhccccccCCCCccccHHHHHHHHHHhhccCcHHHHHHHHHHH
Q 001839 384 SIKSIIKQDPSCHEK----LFRSLDSIKVPEARVMIIWMVGEYSSVGVKIPRMLTTVLKYLAWCFKSEAVETKLQILNTT 459 (1007)
Q Consensus 384 vIk~Llq~~P~~~~~----L~~~ld~I~~p~ArAsIIWLLGEY~~~~e~ip~ia~DvLR~l~k~F~~E~~~VKlqILtla 459 (1007)
.+.++.-.+....++ |++-+++.+....|..|+-.+|.+|..- .-+..-++-.++.+.-+-+..||-|.+.+.
T Consensus 954 TlakmcLah~~LaKr~~P~lvkeLe~~~~~aiRnNiV~am~D~C~~Y---Tam~d~YiP~I~~~L~Dp~~iVRrqt~ilL 1030 (1529)
T KOG0413|consen 954 TLAKMCLAHDRLAKRLMPMLVKELEYNTAHAIRNNIVLAMGDICSSY---TAMTDRYIPMIAASLCDPSVIVRRQTIILL 1030 (1529)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHhhhHHHHhcceeeeehhhHHHH---HHHHHHhhHHHHHHhcCchHHHHHHHHHHH
Confidence 555554444443332 5566777777788889999999998421 112333444566777788899999999999
Q ss_pred HHHhhhcCCCChHHHHHHHHHHHHHHccCCChhHHhHHHHHHHHc
Q 001839 460 IKVLLCAKGGDMWTITRLFSYLLELAECDLNYDVRDRARFFKKLF 504 (1007)
Q Consensus 460 aKL~~~~p~e~~~~i~~L~qyvLeLak~D~n~DVRDRArfy~~LL 504 (1007)
++|+-+.- -.+.=..++++++.+ -|.+.|||.=|-||..=+
T Consensus 1031 ~rLLq~~~--vKw~G~Lf~Rf~l~l--~D~~edIr~~a~f~~~~v 1071 (1529)
T KOG0413|consen 1031 ARLLQFGI--VKWNGELFIRFMLAL--LDANEDIRNDAKFYISEV 1071 (1529)
T ss_pred HHHHhhhh--hhcchhhHHHHHHHH--cccCHHHHHHHHHHHHHH
Confidence 99964331 011112467766655 899999999999997644
No 34
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=95.38 E-value=1.2 Score=56.03 Aligned_cols=88 Identities=24% Similarity=0.204 Sum_probs=64.5
Q ss_pred HHHHHHHhhcCCCChhHHHHHHHHHHHHhhcCchhhHhhHHHHHHHHhcCCChhHHHHHHHHHHHhCCCCccchHHH-HH
Q 001839 12 LVLVAVGKCARDPSVFVRKCAANALPKLHELRQEEITSAIEEIVGILLNDRSPGVVGAAAAAFASICPNNFTLIGRN-YR 90 (1007)
Q Consensus 12 iv~~aIkk~~~D~SPYVRKtAA~AI~Kly~ldpe~~~~~LieiL~~LL~D~~p~VvgsAv~Af~EIcP~rldLihk~-yr 90 (1007)
+.+..++|-+.|++||+|=+|.-.+.++ -.+ +-.+.++.-|.++|.|+++.|-.+|+.|+..+..-.-++.|.. .-
T Consensus 92 LavNti~kDl~d~N~~iR~~AlR~ls~l--~~~-el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~~l~~~~g~~ 168 (757)
T COG5096 92 LAVNTIQKDLQDPNEEIRGFALRTLSLL--RVK-ELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDKDLYHELGLI 168 (757)
T ss_pred HHHHHHHhhccCCCHHHHHHHHHHHHhc--ChH-HHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCHhhhhcccHH
Confidence 4456889999999999999998888866 334 5667788889999999999999999999988864333344433 22
Q ss_pred -HHHHhCCCCChh
Q 001839 91 -NLCQILPDVEEW 102 (1007)
Q Consensus 91 -kLc~~L~d~dEW 102 (1007)
.+-.++.|-|+=
T Consensus 169 ~~l~~l~~D~dP~ 181 (757)
T COG5096 169 DILKELVADSDPI 181 (757)
T ss_pred HHHHHHhhCCCch
Confidence 233334455553
No 35
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=95.28 E-value=0.03 Score=46.68 Aligned_cols=52 Identities=33% Similarity=0.226 Sum_probs=42.0
Q ss_pred hhHHHHHHHHHHHHhhcCchh---hHhhHHHHHHHHhcCCChhHHHHHHHHHHHh
Q 001839 26 VFVRKCAANALPKLHELRQEE---ITSAIEEIVGILLNDRSPGVVGAAAAAFASI 77 (1007)
Q Consensus 26 PYVRKtAA~AI~Kly~ldpe~---~~~~LieiL~~LL~D~~p~VvgsAv~Af~EI 77 (1007)
|.||..|+.||..+-...++. ..+.+++.|..+|.|.++.|-.+|+.|+..|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 689999999999765554432 5567888888999999999999999998654
No 36
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.18 E-value=6 Score=47.94 Aligned_cols=290 Identities=17% Similarity=0.149 Sum_probs=172.0
Q ss_pred hHHHHHHHHhhcCCCChhHHHHHHHHHHHHhhcCch---hhHhhHHHHHHHHhcCCChhHHHHHHHH---HHHhCCCCc-
Q 001839 10 SPLVLVAVGKCARDPSVFVRKCAANALPKLHELRQE---EITSAIEEIVGILLNDRSPGVVGAAAAA---FASICPNNF- 82 (1007)
Q Consensus 10 ~piv~~aIkk~~~D~SPYVRKtAA~AI~Kly~ldpe---~~~~~LieiL~~LL~D~~p~VvgsAv~A---f~EIcP~rl- 82 (1007)
..-++++|-.|..|..--||=-|.-++..+-+.... ...+.+-+.+.++-.|.+..|-|+|=.. +.+|.-++-
T Consensus 82 ~~~iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv~k~~v~~~Fn~iFdvL~klsaDsd~~V~~~aeLLdRLikdIVte~~~ 161 (675)
T KOG0212|consen 82 LEKIVPPVLNCFSDQDSQVRYYACESLYNIAKVAKGEVLVYFNEIFDVLCKLSADSDQNVRGGAELLDRLIKDIVTESAS 161 (675)
T ss_pred HHHhhHHHHHhccCccceeeeHhHHHHHHHHHHhccCcccchHHHHHHHHHHhcCCccccccHHHHHHHHHHHhcccccc
Confidence 444567788999999999998887665544443221 2567788899999999999999887432 344433321
Q ss_pred cc-hHHHHHHHHHhCCCCChhhHHHHHHHHHHhhhhcccccchhhhhhhhhcccCCCcccccccccccccCCCCCCccch
Q 001839 83 TL-IGRNYRNLCQILPDVEEWGQILLIEILLRYVVASHGLVKESIMSSLLCIESSHSEKDVFDVNVALEDNGIPSRTYDS 161 (1007)
Q Consensus 83 dL-ihk~yrkLc~~L~d~dEWgQv~iL~lL~rY~r~~~~~~kp~~~f~~~~~~~~~~~~~~~~~~~~l~~q~~~~~~~~~ 161 (1007)
.+ +.+-..=|-..|-..++...+.++.-|...--. |..-|.++.+
T Consensus 162 tFsL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~------P~~~m~~yl~---------------------------- 207 (675)
T KOG0212|consen 162 TFSLPEFIPLLRERIYVINPMTRQFLVSWLYVLDSV------PDLEMISYLP---------------------------- 207 (675)
T ss_pred ccCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcC------CcHHHHhcch----------------------------
Confidence 11 111222233344455777777776666533210 1100111000
Q ss_pred hhhhhhccccccccccccccCCCcccccccccCccccCCCCChhHHHHHHhhcccccCCChHHHHHHHHHHH----h--c
Q 001839 162 ELVNLVSRSYIEGLGEYLTRSSDTNARSSDLNGARFTSGKTNDDVKLLLQCTSPLLWSHNSAVVLAAAGVHW----I--M 235 (1007)
Q Consensus 162 ~~~~~~~~~~~~~~de~~~~~~~~~~~~~~~~~~~~~~~~~D~D~~lLL~~~~pLLqS~NsAVVlaaa~l~~----~--l 235 (1007)
-|++-+...|.-.+..|---+-.+.. . -
T Consensus 208 ----------------------------------------------~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~s 241 (675)
T KOG0212|consen 208 ----------------------------------------------SLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIRS 241 (675)
T ss_pred ----------------------------------------------HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhc
Confidence 01222222222223333211111110 0 1
Q ss_pred CCHH-HHHHHHHHHHHhh-cCCCCchhhHHHHHHHHHHHCCCccccccceee-----eccCCCH-HHHHHHHH---HHHh
Q 001839 236 SPKE-DVKRIVKPLLFIL-RSSGASKYVVLCNIQVFAKALPHLFVPHYEDFF-----VSSSDSY-QSKALKLE---ILSS 304 (1007)
Q Consensus 236 ap~~-~l~~~~~pLv~LL-~S~~eiqyvvL~~I~~i~~~~p~lF~~~l~~Ff-----v~~~Dp~-~IK~lKLe---IL~~ 304 (1007)
.|.. ...+.++.|+.-+ ++.+++|..+|..|..++...|..+-+++...+ |..+++. .||..+-. .|..
T Consensus 242 ~P~s~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~ 321 (675)
T KOG0212|consen 242 SPSSMDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDLLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLK 321 (675)
T ss_pred CccccCcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcchhhhhhhhhhhcccCCCCCccccHHHHHHHHHHHHHH
Confidence 2322 4566777777665 457999999999999999999988888875432 3334444 46655543 3556
Q ss_pred ccCCCCH------HHHHHHHHHhhccCChhHHHHHHHHHHHHHHhCccc----HHHHHHHHHHHHHhhhccccccCCCCC
Q 001839 305 IVTESSI------SSVFKEFQDYIRDPDRRFAADTVAAIGLCARKLPKM----ANTCVEGLLALIRQELLTSDIESGNGE 374 (1007)
Q Consensus 305 Lane~Ni------~~IL~EL~~Yv~d~D~~fv~~aI~AIG~~A~k~p~~----a~~cl~~Ll~LLs~~~~~s~~~~~~~~ 374 (1007)
++.+.-- ..|++=|+.|+.+...+-+.++..-|..+-.+.|.- .+....+|++-|+ +..
T Consensus 322 l~s~~~~~~~id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p~ql~~h~~~if~tLL~tLs-----------d~s 390 (675)
T KOG0212|consen 322 LVSSERLKEEIDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKAPGQLLVHNDSIFLTLLKTLS-----------DRS 390 (675)
T ss_pred HHhhhhhccccchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCcchhhhhccHHHHHHHHhhc-----------Cch
Confidence 6654433 389999999999988889999999998888888863 3455666666665 223
Q ss_pred ccchhhHHHHHHHHHH
Q 001839 375 ADVLIQSIISIKSIIK 390 (1007)
Q Consensus 375 ~~vV~EsVvvIk~Llq 390 (1007)
+.||-.+..++..|.+
T Consensus 391 d~vvl~~L~lla~i~~ 406 (675)
T KOG0212|consen 391 DEVVLLALSLLASICS 406 (675)
T ss_pred hHHHHHHHHHHHHHhc
Confidence 4466666666666654
No 37
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=95.11 E-value=1.4 Score=55.30 Aligned_cols=122 Identities=19% Similarity=0.292 Sum_probs=80.6
Q ss_pred HHHHHHHHHHHCC---Cccccccceee--eccCCCHHHHHHHHHHHHhccCC-CCHHHHHHH--HHHhhc------cCCh
Q 001839 262 VLCNIQVFAKALP---HLFVPHYEDFF--VSSSDSYQSKALKLEILSSIVTE-SSISSVFKE--FQDYIR------DPDR 327 (1007)
Q Consensus 262 vL~~I~~i~~~~p---~lF~~~l~~Ff--v~~~Dp~~IK~lKLeIL~~Lane-~Ni~~IL~E--L~~Yv~------d~D~ 327 (1007)
.++.|.-|++..+ .+|.+|+..+- +...|.......-|=+|.+|+.+ -++..++++ |..|+. ..++
T Consensus 470 LlKlIRNiS~h~~~~k~~f~~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~~g~~~d 549 (708)
T PF05804_consen 470 LLKLIRNISQHDGPLKELFVDFIGDLAKIVSSGDSEEFVVECLGILANLTIPDLDWAQLLQEYNLLPWLKDLLKPGASED 549 (708)
T ss_pred HHHHHHHHHhcCchHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhCCCCCCh
Confidence 3444444544432 36777665332 44556667777777778877754 388888886 555553 2456
Q ss_pred hHHHHHHHHHHHHHHhCcccHH-----HHHHHHHHHHHhhhccccccCCCCCccchhhHHHHHHHHHHcCC
Q 001839 328 RFAADTVAAIGLCARKLPKMAN-----TCVEGLLALIRQELLTSDIESGNGEADVLIQSIISIKSIIKQDP 393 (1007)
Q Consensus 328 ~fv~~aI~AIG~~A~k~p~~a~-----~cl~~Ll~LLs~~~~~s~~~~~~~~~~vV~EsVvvIk~Llq~~P 393 (1007)
+++-++|..+|.+| ..+.+|. .++..|+.||+.. ..|+..|.|.+=++.+++...+
T Consensus 550 Dl~LE~Vi~~gtla-~d~~~A~lL~~sgli~~Li~LL~~k---------qeDdE~VlQil~~f~~ll~h~~ 610 (708)
T PF05804_consen 550 DLLLEVVILLGTLA-SDPECAPLLAKSGLIPTLIELLNAK---------QEDDEIVLQILYVFYQLLFHEE 610 (708)
T ss_pred HHHHHHHHHHHHHH-CCHHHHHHHHhCChHHHHHHHHHhh---------CchHHHHHHHHHHHHHHHcChH
Confidence 89999999999888 4555554 4588899999742 2244578888888888886533
No 38
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=94.73 E-value=1.2 Score=49.36 Aligned_cols=94 Identities=22% Similarity=0.233 Sum_probs=71.3
Q ss_pred CCChhHHHHHHHHHHHHhhc--Cchh-hHhhHHHHHHHHhcCCChhHHHHHHHHHHHhCCC--CccchHHHHHHHHHhCC
Q 001839 23 DPSVFVRKCAANALPKLHEL--RQEE-ITSAIEEIVGILLNDRSPGVVGAAAAAFASICPN--NFTLIGRNYRNLCQILP 97 (1007)
Q Consensus 23 D~SPYVRKtAA~AI~Kly~l--dpe~-~~~~LieiL~~LL~D~~p~VvgsAv~Af~EIcP~--rldLihk~yrkLc~~L~ 97 (1007)
...|+++..|.++++++-.. ..+- ..-..+.+|..+|.+++|.|--.|+.|+..+..+ +...|.-+..++|+.+.
T Consensus 24 t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~~~Ik~~i~~Vc~~~~ 103 (254)
T PF04826_consen 24 TEDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQEQIKMYIPQVCEETV 103 (254)
T ss_pred CCChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHh
Confidence 45799999999999986332 2211 1123567889999999999999999999988754 34556667888898765
Q ss_pred C--CChhhHHHHHHHHHHhhh
Q 001839 98 D--VEEWGQILLIEILLRYVV 116 (1007)
Q Consensus 98 d--~dEWgQv~iL~lL~rY~r 116 (1007)
. +|.-.|..-|++|+....
T Consensus 104 s~~lns~~Q~agLrlL~nLtv 124 (254)
T PF04826_consen 104 SSPLNSEVQLAGLRLLTNLTV 124 (254)
T ss_pred cCCCCCHHHHHHHHHHHccCC
Confidence 4 477889999999998764
No 39
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=94.59 E-value=17 Score=45.48 Aligned_cols=450 Identities=16% Similarity=0.135 Sum_probs=229.3
Q ss_pred HHHHHHHhhcCCCChhHHHHHHHHHHHHhhc-CchhhHhhHHHHHH---HHhcCCChhHHHHHHHHHHHhCCCCcc----
Q 001839 12 LVLVAVGKCARDPSVFVRKCAANALPKLHEL-RQEEITSAIEEIVG---ILLNDRSPGVVGAAAAAFASICPNNFT---- 83 (1007)
Q Consensus 12 iv~~aIkk~~~D~SPYVRKtAA~AI~Kly~l-dpe~~~~~LieiL~---~LL~D~~p~VvgsAv~Af~EIcP~rld---- 83 (1007)
-++..|.+|+.|.+-.||-.+|+|+.-++.. .| --.+++..+++ +=.+-+---+++|-+-|.--+||..-.
T Consensus 553 ~lv~ii~~gl~De~qkVR~itAlalsalaeaa~P-ygie~fDsVlkpLwkgir~hrgk~laafLkAigyliplmd~eya~ 631 (1172)
T KOG0213|consen 553 PLVKIIEHGLKDEQQKVRTITALALSALAEAATP-YGIEQFDSVLKPLWKGIRQHRGKELAAFLKAIGYLIPLMDAEYAS 631 (1172)
T ss_pred HHHHHHHHhhcccchhhhhHHHHHHHHHHHhcCC-cchHHHHHHHHHHHHHHHHccChHHHHHHHHHhhccccccHHHHH
Confidence 4677999999999999999999999999987 45 44455555543 334455567888888888999986411
Q ss_pred -chHHHHHHHHHhCCCCChhhHHHHHHHHHHhhhhcccccchh-h-------hhhhhhcccCCCcccccccccccccCCC
Q 001839 84 -LIGRNYRNLCQILPDVEEWGQILLIEILLRYVVASHGLVKES-I-------MSSLLCIESSHSEKDVFDVNVALEDNGI 154 (1007)
Q Consensus 84 -Lihk~yrkLc~~L~d~dEWgQv~iL~lL~rY~r~~~~~~kp~-~-------~f~~~~~~~~~~~~~~~~~~~~l~~q~~ 154 (1007)
........|.+-...-||=-.-.+|.++.+.|-+. + +.|. + -|...+......+. ..| .|.+
T Consensus 632 yyTrevmlil~rEf~sPDeemkkivLKVv~qcc~t~-G-v~~~y~r~dilp~ff~~fw~rrmA~dr-----r~y--kqlv 702 (1172)
T KOG0213|consen 632 YYTREVMLILIREFGSPDEEMKKIVLKVVKQCCATD-G-VEPAYIRFDILPEFFFSFWGRRMALDR-----RNY--KQLV 702 (1172)
T ss_pred HhHHHHHHHHHHhhCCChHHHHHHHHHHHHHHhccc-C-CCHHHHhhhhhHHHHhhhhhhhhhccc-----cch--hhHH
Confidence 11122334555555567777778899998888542 1 2221 1 11111110000000 000 0000
Q ss_pred CCCccchh-hhhhhcccccc-ccccccccCCCccccccccc--C--c-cccCCCCChhH---HHHHHhhcccccCCCh--
Q 001839 155 PSRTYDSE-LVNLVSRSYIE-GLGEYLTRSSDTNARSSDLN--G--A-RFTSGKTNDDV---KLLLQCTSPLLWSHNS-- 222 (1007)
Q Consensus 155 ~~~~~~~~-~~~~~~~~~~~-~~de~~~~~~~~~~~~~~~~--~--~-~~~~~~~D~D~---~lLL~~~~pLLqS~Ns-- 222 (1007)
+ +..+ .+.+-....+. ..+++ +++. ..+.+.. . + -+.-...|-|. ..|++.+.--||....
T Consensus 703 ~---ttv~ia~KvG~~~~v~R~v~~l---kde~-e~yrkm~~etv~ri~~~lg~~diderleE~lidgil~Afqeqtt~d 775 (1172)
T KOG0213|consen 703 D---TTVEIAAKVGSDPIVSRVVLDL---KDEP-EQYRKMVAETVSRIVGRLGAADIDERLEERLIDGILYAFQEQTTED 775 (1172)
T ss_pred H---HHHHHHHHhCchHHHHHHhhhh---cccc-HHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHhcccch
Confidence 0 0000 00000000000 00111 0000 0000000 0 0 00001123333 5688888888887765
Q ss_pred HHHHHHHHHHH-hcCC--HHHHHHHHHHHHHhhcC-CCCchhhHHHHHHHHHHHCCC----ccccccce-ee--eccCCC
Q 001839 223 AVVLAAAGVHW-IMSP--KEDVKRIVKPLLFILRS-SGASKYVVLCNIQVFAKALPH----LFVPHYED-FF--VSSSDS 291 (1007)
Q Consensus 223 AVVlaaa~l~~-~lap--~~~l~~~~~pLv~LL~S-~~eiqyvvL~~I~~i~~~~p~----lF~~~l~~-Ff--v~~~Dp 291 (1007)
+|++-+..+.. .+.. +.++..++.-.+-+|++ ++.+|.-+++.|..|+..-.. -.-.|+-. .| +--.+|
T Consensus 776 ~vml~gfg~V~~~lg~r~kpylpqi~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGvvLyEylgeeyp 855 (1172)
T KOG0213|consen 776 SVMLLGFGTVVNALGGRVKPYLPQICSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGVVLYEYLGEEYP 855 (1172)
T ss_pred hhhhhhHHHHHHHHhhccccchHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhHHHHHhcCcccH
Confidence 44444433321 1211 23455666666666765 688988888877776543221 11223321 22 112334
Q ss_pred HHHHHHHHHHHHhccCC-------CCHHHHHHHHHHhhccCChhHHHHHHHHHHHHHHhCcccHH---H--HHHHHHHHH
Q 001839 292 YQSKALKLEILSSIVTE-------SSISSVFKEFQDYIRDPDRRFAADTVAAIGLCARKLPKMAN---T--CVEGLLALI 359 (1007)
Q Consensus 292 ~~IK~lKLeIL~~Lane-------~Ni~~IL~EL~~Yv~d~D~~fv~~aI~AIG~~A~k~p~~a~---~--cl~~Ll~LL 359 (1007)
. +----|.-|+.++|- --++.||--|.--+++-...++...|.-+|++|-+-|+... | +.-.|+++|
T Consensus 856 E-vLgsILgAikaI~nvigm~km~pPi~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMRIcfeLlelL 934 (1172)
T KOG0213|consen 856 E-VLGSILGAIKAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMRICFELLELL 934 (1172)
T ss_pred H-HHHHHHHHHHHHHHhccccccCCChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHH
Confidence 3 333334444444443 35677777777777777778999999999999999887542 2 222345555
Q ss_pred HhhhccccccCCCCCccchhhHHH---HHHHHHHcCCchHHHHHHhhhccCchh--hHH---hhhhhccccccCCCCccc
Q 001839 360 RQELLTSDIESGNGEADVLIQSII---SIKSIIKQDPSCHEKLFRSLDSIKVPE--ARV---MIIWMVGEYSSVGVKIPR 431 (1007)
Q Consensus 360 s~~~~~s~~~~~~~~~~vV~EsVv---vIk~Llq~~P~~~~~L~~~ld~I~~p~--ArA---sIIWLLGEY~~~~e~ip~ 431 (1007)
..- + .+ +-.-++. .|.+.| .| |..|+-+++.++..+ -|. .-|-|+||||..-
T Consensus 935 kah---------k-K~-iRRaa~nTfG~IakaI--GP--qdVLatLlnnLkvqeRq~RvcTtvaIaIVaE~c~pF----- 994 (1172)
T KOG0213|consen 935 KAH---------K-KE-IRRAAVNTFGYIAKAI--GP--QDVLATLLNNLKVQERQNRVCTTVAIAIVAETCGPF----- 994 (1172)
T ss_pred HHH---------H-HH-HHHHHHhhhhHHHHhc--CH--HHHHHHHHhcchHHHHHhchhhhhhhhhhhhhcCch-----
Confidence 421 0 00 0001111 111111 12 344666777666432 222 2378999999532
Q ss_pred cHHHHHHHHHHhhccCcHHHHHHHHHHHHHHhhhcCCCCh-HHHHHHHHHHHHHHccCCChhHHhHHHHHHHHc
Q 001839 432 MLTTVLKYLAWCFKSEAVETKLQILNTTIKVLLCAKGGDM-WTITRLFSYLLELAECDLNYDVRDRARFFKKLF 504 (1007)
Q Consensus 432 ia~DvLR~l~k~F~~E~~~VKlqILtlaaKL~~~~p~e~~-~~i~~L~qyvLeLak~D~n~DVRDRArfy~~LL 504 (1007)
-||--+...|..-...|+--+|-+++-+|=+-- ++. +-+..++- +|+=|..|.|+==|+-|--.-+=+
T Consensus 995 ---tVLPalmneYrtPe~nVQnGVLkalsf~Feyig-emskdYiyav~P-lleDAlmDrD~vhRqta~~~I~Hl 1063 (1172)
T KOG0213|consen 995 ---TVLPALMNEYRTPEANVQNGVLKALSFMFEYIG-EMSKDYIYAVTP-LLEDALMDRDLVHRQTAMNVIKHL 1063 (1172)
T ss_pred ---hhhHHHHhhccCchhHHHHhHHHHHHHHHHHHH-HHhhhHHHHhhH-HHHHhhccccHHHHHHHHHHHHHH
Confidence 234445567777778899999999887764432 221 11211111 344455666666666555443333
No 40
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.52 E-value=1.2 Score=54.39 Aligned_cols=88 Identities=20% Similarity=0.156 Sum_probs=67.9
Q ss_pred hHHHHHHHHhhcCCCChhHHHHHHHHHHHHhhcCchhhHhhHHHHHHHHhcCCChhHHHHHHHHH---HHhCC-------
Q 001839 10 SPLVLVAVGKCARDPSVFVRKCAANALPKLHELRQEEITSAIEEIVGILLNDRSPGVVGAAAAAF---ASICP------- 79 (1007)
Q Consensus 10 ~piv~~aIkk~~~D~SPYVRKtAA~AI~Kly~ldpe~~~~~LieiL~~LL~D~~p~VvgsAv~Af---~EIcP------- 79 (1007)
-..+...+-....|..+-||+.|+.|+..|..--. -. ..+.....++++|.+-.|-.+|+.+. -..||
T Consensus 196 ~~~~~~~l~~~~~~~D~~Vrt~A~eglL~L~eg~k-L~-~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e~ 273 (823)
T KOG2259|consen 196 REHAARGLIYLEHDQDFRVRTHAVEGLLALSEGFK-LS-KACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERES 273 (823)
T ss_pred HHHHHHHHHHHhcCCCcchHHHHHHHHHhhccccc-cc-HHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccchh
Confidence 34555567788999999999999999998887221 22 23556677899999999999997764 46674
Q ss_pred CCccchHHHHHHHHHhCCCC
Q 001839 80 NNFTLIGRNYRNLCQILPDV 99 (1007)
Q Consensus 80 ~rldLihk~yrkLc~~L~d~ 99 (1007)
++..+.-..|.++|+.+.|.
T Consensus 274 ~e~kl~D~aF~~vC~~v~D~ 293 (823)
T KOG2259|consen 274 EEEKLKDAAFSSVCRAVRDR 293 (823)
T ss_pred hhhhhHHHHHHHHHHHHhcC
Confidence 34677888999999999884
No 41
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=94.51 E-value=0.21 Score=51.99 Aligned_cols=91 Identities=15% Similarity=0.070 Sum_probs=77.4
Q ss_pred ChhHHHHHHHHHHHHhhcCchhhHhhHHHHHHHHhcCCChhHHHHHHHHHHHhCCCCccchHHHH-HHHHHhCCCCChhh
Q 001839 25 SVFVRKCAANALPKLHELRQEEITSAIEEIVGILLNDRSPGVVGAAAAAFASICPNNFTLIGRNY-RNLCQILPDVEEWG 103 (1007)
Q Consensus 25 SPYVRKtAA~AI~Kly~ldpe~~~~~LieiL~~LL~D~~p~VvgsAv~Af~EIcP~rldLihk~y-rkLc~~L~d~dEWg 103 (1007)
+|-||.+|+.++.-+....| ...+.+.+.+..+|+|.+|.|--.|+..+..+.-+.+--..+++ ..++..|.|-|+.-
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~-~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~k~~l~~~~l~~l~D~~~~I 79 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYP-NLVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKVKGQLFSRILKLLVDENPEI 79 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCc-HHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceeehhhhhHHHHHHHcCCCHHH
Confidence 58899999999999999888 66777888899999999999999999999998766544444554 88999999999998
Q ss_pred HHHHHHHHHHhhh
Q 001839 104 QILLIEILLRYVV 116 (1007)
Q Consensus 104 Qv~iL~lL~rY~r 116 (1007)
+-....++..+..
T Consensus 80 r~~A~~~~~e~~~ 92 (178)
T PF12717_consen 80 RSLARSFFSELLK 92 (178)
T ss_pred HHHHHHHHHHHHH
Confidence 8888888877764
No 42
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=94.42 E-value=1.5 Score=52.00 Aligned_cols=225 Identities=14% Similarity=0.042 Sum_probs=142.0
Q ss_pred HHHHHHHHhhc-CCCChhHHHHHHHHHHHHhhcCchhhHhhHHHHHHHHhcCCChhHHHHHHHHHHHhCCCCccchHHHH
Q 001839 11 PLVLVAVGKCA-RDPSVFVRKCAANALPKLHELRQEEITSAIEEIVGILLNDRSPGVVGAAAAAFASICPNNFTLIGRNY 89 (1007)
Q Consensus 11 piv~~aIkk~~-~D~SPYVRKtAA~AI~Kly~ldpe~~~~~LieiL~~LL~D~~p~VvgsAv~Af~EIcP~rldLihk~y 89 (1007)
|..+..+...+ .|.++-||..|+.++... +. ...++.+...|.|.++.|-.+|+.||-++-+.. ..
T Consensus 53 ~~a~~~L~~aL~~d~~~ev~~~aa~al~~~---~~----~~~~~~L~~~L~d~~~~vr~aaa~ALg~i~~~~------a~ 119 (410)
T TIGR02270 53 KAATELLVSALAEADEPGRVACAALALLAQ---ED----ALDLRSVLAVLQAGPEGLCAGIQAALGWLGGRQ------AE 119 (410)
T ss_pred HhHHHHHHHHHhhCCChhHHHHHHHHHhcc---CC----hHHHHHHHHHhcCCCHHHHHHHHHHHhcCCchH------HH
Confidence 44444555555 588999999988888632 22 222455566788999999999999999986554 55
Q ss_pred HHHHHhCCCCChhhHHHHHHHHHHhhhhcccccchhhhhhhhhcccCCCcccccccccccccCCCCCCccchhhhhhhcc
Q 001839 90 RNLCQILPDVEEWGQILLIEILLRYVVASHGLVKESIMSSLLCIESSHSEKDVFDVNVALEDNGIPSRTYDSELVNLVSR 169 (1007)
Q Consensus 90 rkLc~~L~d~dEWgQv~iL~lL~rY~r~~~~~~kp~~~f~~~~~~~~~~~~~~~~~~~~l~~q~~~~~~~~~~~~~~~~~ 169 (1007)
..|+..|.+-+++.+..++..|..-.. . |
T Consensus 120 ~~L~~~L~~~~p~vR~aal~al~~r~~-~-----~--------------------------------------------- 148 (410)
T TIGR02270 120 PWLEPLLAASEPPGRAIGLAALGAHRH-D-----P--------------------------------------------- 148 (410)
T ss_pred HHHHHHhcCCChHHHHHHHHHHHhhcc-C-----h---------------------------------------------
Confidence 679999999999999888877665210 0 0
Q ss_pred ccccccccccccCCCcccccccccCccccCCCCChhHHHHHHhhcccccCCChHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 001839 170 SYIEGLGEYLTRSSDTNARSSDLNGARFTSGKTNDDVKLLLQCTSPLLWSHNSAVVLAAAGVHWIMSPKEDVKRIVKPLL 249 (1007)
Q Consensus 170 ~~~~~~de~~~~~~~~~~~~~~~~~~~~~~~~~D~D~~lLL~~~~pLLqS~NsAVVlaaa~l~~~lap~~~l~~~~~pLv 249 (1007)
...+.++|++.++.|--+++++.-.+... .....|.
T Consensus 149 ----------------------------------------~~~L~~~L~d~d~~Vra~A~raLG~l~~~----~a~~~L~ 184 (410)
T TIGR02270 149 ----------------------------------------GPALEAALTHEDALVRAAALRALGELPRR----LSESTLR 184 (410)
T ss_pred ----------------------------------------HHHHHHHhcCCCHHHHHHHHHHHHhhccc----cchHHHH
Confidence 12345667788999999999887666543 2333455
Q ss_pred HhhcC-CCCchhhHHHHHHHHHHHCCCccccccceeeeccCCCHHHHHHHHHHHHhccCCCCHHHHHHHHHHhhccCChh
Q 001839 250 FILRS-SGASKYVVLCNIQVFAKALPHLFVPHYEDFFVSSSDSYQSKALKLEILSSIVTESSISSVFKEFQDYIRDPDRR 328 (1007)
Q Consensus 250 ~LL~S-~~eiqyvvL~~I~~i~~~~p~lF~~~l~~Ffv~~~Dp~~IK~lKLeIL~~Lane~Ni~~IL~EL~~Yv~d~D~~ 328 (1007)
..+.+ +++||..++..+..+- .+.... .+..|+....-| ....-..+|...-++ .++.=|...+.+.+
T Consensus 185 ~al~d~~~~VR~aA~~al~~lG--~~~A~~-~l~~~~~~~g~~--~~~~l~~~lal~~~~----~a~~~L~~ll~d~~-- 253 (410)
T TIGR02270 185 LYLRDSDPEVRFAALEAGLLAG--SRLAWG-VCRRFQVLEGGP--HRQRLLVLLAVAGGP----DAQAWLRELLQAAA-- 253 (410)
T ss_pred HHHcCCCHHHHHHHHHHHHHcC--CHhHHH-HHHHHHhccCcc--HHHHHHHHHHhCCch----hHHHHHHHHhcChh--
Confidence 55654 6889999988886652 233222 233344332222 222222344443222 55666666666544
Q ss_pred HHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Q 001839 329 FAADTVAAIGLCARKLPKMANTCVEGLLALIR 360 (1007)
Q Consensus 329 fv~~aI~AIG~~A~k~p~~a~~cl~~Ll~LLs 360 (1007)
+...++.++|++. .|. .+..|+.++.
T Consensus 254 vr~~a~~AlG~lg--~p~----av~~L~~~l~ 279 (410)
T TIGR02270 254 TRREALRAVGLVG--DVE----AAPWCLEAMR 279 (410)
T ss_pred hHHHHHHHHHHcC--Ccc----hHHHHHHHhc
Confidence 7888999999754 344 4455555554
No 43
>smart00809 Alpha_adaptinC2 Adaptin C-terminal domain. Adaptins are components of the adaptor complexes which link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. Gamma-adaptin is a subunit of the golgi adaptor. Alpha adaptin is a heterotetramer that regulates clathrin-bud formation. The carboxyl-terminal appendage of the alpha subunit regulates translocation of endocytic accessory proteins to the bud site. This Ig-fold domain is found in alpha, beta and gamma adaptins and consists of a beta-sandwich containing 7 strands in 2 beta-sheets in a greek-key topology PUBMED:10430869, PUBMED:12176391. The adaptor appendage contains an additional N-terminal strand.
Probab=94.26 E-value=0.46 Score=44.69 Aligned_cols=92 Identities=23% Similarity=0.331 Sum_probs=60.1
Q ss_pred CCCCeeEEEEecCCCCCCCCCeEEEEEEEEeCCCCceeeeEeeccccchhhhhhhhhhhccccccccCCCCCCcccCCcc
Q 001839 734 NGNGLKVYYSFSSEASTISPQLVCLETFFENCSSETMSEVTLVDEESHKALDLADLTLATTASSLTSQSDLPTLVPMEEI 813 (1007)
Q Consensus 734 ~g~GL~v~Y~F~r~p~~~s~~mv~v~l~f~N~s~~~i~~i~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~f~~i 813 (1007)
.++||.|.|++.|.+ ..+.|.++|.|.+..+|+++.+.=- .|.++... +.+...
T Consensus 3 ~~~~l~I~~~~~~~~-----~~~~i~~~~~N~s~~~it~f~~~~a----vpk~~~l~----------------l~~~s~- 56 (104)
T smart00809 3 EKNGLQIGFKFERRP-----GLIRITLTFTNKSPSPITNFSFQAA----VPKSLKLQ----------------LQPPSS- 56 (104)
T ss_pred cCCCEEEEEEEEcCC-----CeEEEEEEEEeCCCCeeeeEEEEEE----cccceEEE----------------EcCCCC-
Confidence 367999999999874 4689999999999999999998542 23343211 222211
Q ss_pred cccCCCCeeEEEEEEEcCC-CCccceEEEEEcCCeeeeE
Q 001839 814 TSLEPGQTMKRILEVRFHH-HLLPLKLALHCNGKKLPVK 851 (1007)
Q Consensus 814 ~~l~p~~~~~~~~~idF~~-~~~~~~~~l~~~~~~~~v~ 851 (1007)
..|+||+.++-.|.|.=.. ...++++.+...-+.-+++
T Consensus 57 ~~l~p~~~i~q~~~i~~~~~~~~~~~~~vsy~~~g~~~~ 95 (104)
T smart00809 57 PTLPPGGQITQVLKVENPGKFPLRLRLRLSYLLGGSAVT 95 (104)
T ss_pred CccCCCCCEEEEEEEECCCCCCEEEEEEEEEEECCEEEE
Confidence 4689999888887775322 2245566665543333443
No 44
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=94.10 E-value=0.15 Score=48.36 Aligned_cols=66 Identities=26% Similarity=0.227 Sum_probs=55.2
Q ss_pred cchhhhHHHHHHHHhhcCCCChhHHHHHHHHHHHHhhcCchh---hHhhHHHHHHHHhcCCChhHHHHH
Q 001839 5 RLHVISPLVLVAVGKCARDPSVFVRKCAANALPKLHELRQEE---ITSAIEEIVGILLNDRSPGVVGAA 70 (1007)
Q Consensus 5 RVp~I~piv~~aIkk~~~D~SPYVRKtAA~AI~Kly~ldpe~---~~~~LieiL~~LL~D~~p~VvgsA 70 (1007)
++..-++-++.+|-+|+.|.++=||-.|..|+..+-+...++ ...++.+.|.+++.|.++.|-.+|
T Consensus 20 ~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d~~Vr~~a 88 (97)
T PF12755_consen 20 DISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADPDENVRSAA 88 (97)
T ss_pred hHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHH
Confidence 356667888889999999999999999999999988775533 456677788899999999998776
No 45
>PF14807 AP4E_app_platf: Adaptin AP4 complex epsilon appendage platform
Probab=94.01 E-value=0.4 Score=46.16 Aligned_cols=104 Identities=16% Similarity=0.225 Sum_probs=80.1
Q ss_pred ccccCCHHHHHHHhhcCCCCcccccceecccCcCcccccccchhhcchhhhhhHHHHHHHhhhcccceeeecCccccccc
Q 001839 861 KPVPMDMETFIEMESRLPGMFEYARSCTFTDHLGEVDKDTDESSLLKDKYLVICESLASKMLSNANIFLVSVDMPVAAKF 940 (1007)
Q Consensus 861 ~p~~ms~~~f~~~~~~L~GM~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~an~~~v~~~~~~~~~~ 940 (1007)
||..||-++|=+.=++++ ||. +.+++...+ .....+.+++.+.+|++.|-+=
T Consensus 1 RPl~isTeeFG~~W~s~~--~e~--k~~l~~~~~-----------------~t~~~~l~~l~~~l~lh~VevI------- 52 (104)
T PF14807_consen 1 RPLQISTEEFGQLWLSFS--NER--KQNLPSSSQ-----------------RTLPEFLQRLQQKLRLHVVEVI------- 52 (104)
T ss_pred CCccccHHHHHHHHHcCC--CeE--EEeccccCc-----------------CCHHHHHHHHHHhcCceEEEEe-------
Confidence 799999999988888776 466 444431111 1224677889999999999751
Q ss_pred CCCCCCceeeeeccccCCceEEEEEEeccccCCCcccEEEEcccchhHHHHHHHHHHHhhc
Q 001839 941 DDASGLSLRFSSEILGNSVPCLITITVEGKCSEPLKVSAKVNCEETVFGLNLLNRIVNFLV 1001 (1007)
Q Consensus 941 ~~~~~~~~rfa~~t~~~~~~~lit~~~~~~~~~~~~~~~~vn~e~~v~g~~l~~~~~~~~~ 1001 (1007)
|++.=|||+.+.++..||+-+.+ +.+ .+.++|++-.+-++=-|++.++.++.
T Consensus 53 ----g~E~I~A~~ll~~~~~~L~H~~~--~~~---~l~l~vrs~~~~l~d~ll~~~~~~~~ 104 (104)
T PF14807_consen 53 ----GNEGIFACQLLNSSPVCLLHCRV--NAG---TLDLWVRSSDSPLTDCLLYQCQKILQ 104 (104)
T ss_pred ----CccceeeeeccCCCCeEEEEEEe--cCC---eEEEEEEcCCCCcHHHHHHHHHHHhC
Confidence 44666999999999999999987 322 56889999999999999999988763
No 46
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=93.69 E-value=0.77 Score=55.65 Aligned_cols=194 Identities=14% Similarity=0.138 Sum_probs=116.4
Q ss_pred CchhhHHHHHHHHHHHCC--CccccccceeeeccCCCHHHHHHHHHHHHhccCCCCHH----HHHHHHHHhhccCChhHH
Q 001839 257 ASKYVVLCNIQVFAKALP--HLFVPHYEDFFVSSSDSYQSKALKLEILSSIVTESSIS----SVFKEFQDYIRDPDRRFA 330 (1007)
Q Consensus 257 eiqyvvL~~I~~i~~~~p--~lF~~~l~~Ffv~~~Dp~~IK~lKLeIL~~Lane~Ni~----~IL~EL~~Yv~d~D~~fv 330 (1007)
.-++-.|..+..-....+ +.|...+ .|-|..+.....-..-.+||..+....... .+...|+.-+.+.++.++
T Consensus 16 ~~~~~~L~~l~~~~~~~~~l~~~~~~~-lf~~L~~~~~e~v~~~~~iL~~~l~~~~~~~l~~~~~~~L~~gL~h~~~~Vr 94 (503)
T PF10508_consen 16 AERLEALPELKTELSSSPFLERLPEPV-LFDCLNTSNREQVELICDILKRLLSALSPDSLLPQYQPFLQRGLTHPSPKVR 94 (503)
T ss_pred cchHHHHHHHHHHHhhhhHHHhchHHH-HHHHHhhcChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcCCCHHHH
Confidence 334444555544333333 2222222 344444332223345557777766655554 455556666678888999
Q ss_pred HHHHHHHHHHHHhCcccHH-----HHHHHHHHHHHhhhccccccCCCCCccchhhHHHHHHHHHHcCCchHHH-------
Q 001839 331 ADTVAAIGLCARKLPKMAN-----TCVEGLLALIRQELLTSDIESGNGEADVLIQSIISIKSIIKQDPSCHEK------- 398 (1007)
Q Consensus 331 ~~aI~AIG~~A~k~p~~a~-----~cl~~Ll~LLs~~~~~s~~~~~~~~~~vV~EsVvvIk~Llq~~P~~~~~------- 398 (1007)
+.++++|++++........ .++..++.+|.. .+..|...++..|+.|....+. ...
T Consensus 95 ~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~-----------~d~~Va~~A~~~L~~l~~~~~~-~~~l~~~~~~ 162 (503)
T PF10508_consen 95 RLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRD-----------PDLSVAKAAIKALKKLASHPEG-LEQLFDSNLL 162 (503)
T ss_pred HHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcC-----------CcHHHHHHHHHHHHHHhCCchh-HHHHhCcchH
Confidence 9999999999876554333 456667777752 2444666677788888754333 222
Q ss_pred --HHHhhhccCchhhHHhhhhhccccccCCCCccccHHH--HHHHHHHhhccCcHHHHHHHHHHHHHHhh
Q 001839 399 --LFRSLDSIKVPEARVMIIWMVGEYSSVGVKIPRMLTT--VLKYLAWCFKSEAVETKLQILNTTIKVLL 464 (1007)
Q Consensus 399 --L~~~ld~I~~p~ArAsIIWLLGEY~~~~e~ip~ia~D--vLR~l~k~F~~E~~~VKlqILtlaaKL~~ 464 (1007)
|...+.. .++..|..+++++.+-+...+.....+.+ ++..+.+.+.+++..||+..+.+...|..
T Consensus 163 ~~L~~l~~~-~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~ 231 (503)
T PF10508_consen 163 SKLKSLMSQ-SSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAE 231 (503)
T ss_pred HHHHHHHhc-cCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHc
Confidence 2222222 13567888888888776432222222333 67788888888888999999999999876
No 47
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=93.65 E-value=1.8 Score=54.84 Aligned_cols=170 Identities=12% Similarity=0.153 Sum_probs=101.0
Q ss_pred HHHHHHHHHHhhccCCh--hHHHHHHHHHHHHHHhC----cccHHHHHHHHHHHHHhhhccccccCCCCCccchhhHHHH
Q 001839 311 ISSVFKEFQDYIRDPDR--RFAADTVAAIGLCARKL----PKMANTCVEGLLALIRQELLTSDIESGNGEADVLIQSIIS 384 (1007)
Q Consensus 311 i~~IL~EL~~Yv~d~D~--~fv~~aI~AIG~~A~k~----p~~a~~cl~~Ll~LLs~~~~~s~~~~~~~~~~vV~EsVvv 384 (1007)
+..|+..|..|+.-... .+..+...-++..-.++ |.+....+..++.-+... ...|..-+|..
T Consensus 129 ~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~lsr~g~ll~~fh~~il~~l~~ql~s~-----------R~aVrKkai~~ 197 (1233)
T KOG1824|consen 129 CKRITPKLKQAISKQEDVSAIKCEVLDILADVLSRFGTLLPNFHLSILKCLLPQLQSP-----------RLAVRKKAITA 197 (1233)
T ss_pred HHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhhcccCcchHHHHHHHHhhcccCh-----------HHHHHHHHHHH
Confidence 35667777777754222 24445555555554444 555556666666555421 22345556666
Q ss_pred HHHHHHcCCc-hHHHHHHh----hhccCchhhHHhhhhhcccccc-----CCCCccccHHHHHHHHHHhhccCcHHHHHH
Q 001839 385 IKSIIKQDPS-CHEKLFRS----LDSIKVPEARVMIIWMVGEYSS-----VGVKIPRMLTTVLKYLAWCFKSEAVETKLQ 454 (1007)
Q Consensus 385 Ik~Llq~~P~-~~~~L~~~----ld~I~~p~ArAsIIWLLGEY~~-----~~e~ip~ia~DvLR~l~k~F~~E~~~VKlq 454 (1007)
|-.+.-..+. .+.++.+. +..=..+.+....|-++|+-|. .+.+.+.+.|-+..+..+- ..++++.|-.
T Consensus 198 l~~la~~~~~~ly~~li~~Ll~~L~~~~q~~~~rt~Iq~l~~i~r~ag~r~~~h~~~ivp~v~~y~~~~-e~~dDELrE~ 276 (1233)
T KOG1824|consen 198 LGHLASSCNRDLYVELIEHLLKGLSNRTQMSATRTYIQCLAAICRQAGHRFGSHLDKIVPLVADYCNKI-EEDDDELREY 276 (1233)
T ss_pred HHHHHHhcCHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHhcchhhcccchhhHHHHHHhccc-ccCcHHHHHH
Confidence 6666554443 34444442 2222345566666777776542 2235667777666655332 4567889999
Q ss_pred HHHHHHHHhhhcCCCChHHHHHHHHHHHHHHccCCChh
Q 001839 455 ILNTTIKVLLCAKGGDMWTITRLFSYLLELAECDLNYD 492 (1007)
Q Consensus 455 ILtlaaKL~~~~p~e~~~~i~~L~qyvLeLak~D~n~D 492 (1007)
.|.++--+..++|.+..+....+.+-+++.-.||.||.
T Consensus 277 ~lQale~fl~rcp~ei~p~~pei~~l~l~yisYDPNy~ 314 (1233)
T KOG1824|consen 277 CLQALESFLRRCPKEILPHVPEIINLCLSYISYDPNYN 314 (1233)
T ss_pred HHHHHHHHHHhChhhhcccchHHHHHHHHHhccCCCCC
Confidence 99988888888897765555566666666678998764
No 48
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.61 E-value=0.97 Score=55.84 Aligned_cols=279 Identities=13% Similarity=0.179 Sum_probs=175.9
Q ss_pred CChhHHHHHHhhcccccCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhc-CCCCchhhHHHHHHHHHHHCCCcc--c
Q 001839 202 TNDDVKLLLQCTSPLLWSHNSAVVLAAAGVHWIMSPKEDVKRIVKPLLFILR-SSGASKYVVLCNIQVFAKALPHLF--V 278 (1007)
Q Consensus 202 ~D~D~~lLL~~~~pLLqS~NsAVVlaaa~l~~~lap~~~l~~~~~pLv~LL~-S~~eiqyvvL~~I~~i~~~~p~lF--~ 278 (1007)
+=.+--|+-++...=|||.|.=|==.+.|..+-+-.++-++.+.+....-|. .++=+|--+.-.|-.|-+..-.++ .
T Consensus 93 l~~EMILvcna~RkDLQHPNEyiRG~TLRFLckLkE~ELlepl~p~IracleHrhsYVRrNAilaifsIyk~~~~L~pDa 172 (948)
T KOG1058|consen 93 LLHEMILVCNAYRKDLQHPNEYIRGSTLRFLCKLKEPELLEPLMPSIRACLEHRHSYVRRNAILAIFSIYKNFEHLIPDA 172 (948)
T ss_pred cHHHHHHHHHHHhhhccCchHhhcchhhhhhhhcCcHHHhhhhHHHHHHHHhCcchhhhhhhheeehhHHhhhhhhcCCh
Confidence 4456677889999999999997777777777777766666666665555553 233333323333333333322233 2
Q ss_pred cc-cceeeeccCCCHHHHHHHHHHHHhccCCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHHHHhCcccHHHHHHHHHH
Q 001839 279 PH-YEDFFVSSSDSYQSKALKLEILSSIVTESSISSVFKEFQDYIRDPDRRFAADTVAAIGLCARKLPKMANTCVEGLLA 357 (1007)
Q Consensus 279 ~~-l~~Ffv~~~Dp~~IK~lKLeIL~~Lane~Ni~~IL~EL~~Yv~d~D~~fv~~aI~AIG~~A~k~p~~a~~cl~~Ll~ 357 (1007)
|. +.+|...-.||. .|+-..=.|.. +++++.-.-+.+=..-+.+-+..+....|.-|.+.+.+-|.-..++++.++.
T Consensus 173 peLi~~fL~~e~Dps-CkRNAFi~L~~-~D~ErAl~Yl~~~idqi~~~~~~LqlViVE~Irkv~~~~p~~~~~~i~~i~~ 250 (948)
T KOG1058|consen 173 PELIESFLLTEQDPS-CKRNAFLMLFT-TDPERALNYLLSNIDQIPSFNDSLQLVIVELIRKVCLANPAEKARYIRCIYN 250 (948)
T ss_pred HHHHHHHHHhccCch-hHHHHHHHHHh-cCHHHHHHHHHhhHhhccCccHHHHHHHHHHHHHHHhcCHHHhhHHHHHHHH
Confidence 33 367878888887 77777766665 5666666555555556666677777778888888888888888899999999
Q ss_pred HHHhhhccccccCCCCCccchhhHHHHHHHHHHcCCchHHH----HHHhhhccCchhhHHhhhhhccccccCCCC-cccc
Q 001839 358 LIRQELLTSDIESGNGEADVLIQSIISIKSIIKQDPSCHEK----LFRSLDSIKVPEARVMIIWMVGEYSSVGVK-IPRM 432 (1007)
Q Consensus 358 LLs~~~~~s~~~~~~~~~~vV~EsVvvIk~Llq~~P~~~~~----L~~~ld~I~~p~ArAsIIWLLGEY~~~~e~-ip~i 432 (1007)
||+.. +..|+.|+-..|-. +-.+|...+. +++++....+...+.-++-.+.+|....+. ....
T Consensus 251 lL~st-----------ssaV~fEaa~tlv~-lS~~p~alk~Aa~~~i~l~~kesdnnvklIvldrl~~l~~~~~~il~~l 318 (948)
T KOG1058|consen 251 LLSST-----------SSAVIFEAAGTLVT-LSNDPTALKAAASTYIDLLVKESDNNVKLIVLDRLSELKALHEKILQGL 318 (948)
T ss_pred HHhcC-----------CchhhhhhcceEEE-ccCCHHHHHHHHHHHHHHHHhccCcchhhhhHHHHHHHhhhhHHHHHHH
Confidence 99853 23466665432211 1245554433 667777777778888888888888633222 1223
Q ss_pred HHHHHHHHHHhhccCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHccCCChhHHhHHHHHHHHcc
Q 001839 433 LTTVLKYLAWCFKSEAVETKLQILNTTIKVLLCAKGGDMWTITRLFSYLLELAECDLNYDVRDRARFFKKLFS 505 (1007)
Q Consensus 433 a~DvLR~l~k~F~~E~~~VKlqILtlaaKL~~~~p~e~~~~i~~L~qyvLeLak~D~n~DVRDRArfy~~LL~ 505 (1007)
+-|+||.+ ...+..||--.|.++.+|...+--+ .+..+++. ++.+.. | .=.|...-|+++|-
T Consensus 319 ~mDvLrvL----ss~dldvr~Ktldi~ldLvssrNve---div~~Lkk--e~~kT~-~-~e~d~~~~yRqlLi 380 (948)
T KOG1058|consen 319 IMDVLRVL----SSPDLDVRSKTLDIALDLVSSRNVE---DIVQFLKK--EVMKTH-N-EESDDNGKYRQLLI 380 (948)
T ss_pred HHHHHHHc----CcccccHHHHHHHHHHhhhhhccHH---HHHHHHHH--HHHhcc-c-cccccchHHHHHHH
Confidence 45666655 3567789999999999997655321 22233331 232222 1 14666777777764
No 49
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.57 E-value=6.6 Score=49.05 Aligned_cols=342 Identities=14% Similarity=0.184 Sum_probs=195.8
Q ss_pred hhhhHHHHHHHHh---hcCCCChhHHHHHHHHHHHHhhcCchhhHhhHHHHHHHHhcCCChhHHHHHHHHHHHhC----C
Q 001839 7 HVISPLVLVAVGK---CARDPSVFVRKCAANALPKLHELRQEEITSAIEEIVGILLNDRSPGVVGAAAAAFASIC----P 79 (1007)
Q Consensus 7 p~I~piv~~aIkk---~~~D~SPYVRKtAA~AI~Kly~ldpe~~~~~LieiL~~LL~D~~p~VvgsAv~Af~EIc----P 79 (1007)
+.++|.++..+-| +-.|..+-+-|+|.-|+.=+-+...++-.+.+.+.++.-+...|=-=.-+|++||-.|. |
T Consensus 318 ~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~~D~Iv~~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~ 397 (859)
T KOG1241|consen 318 QDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCVGDDIVPHVLPFIEENIQNPDWRNREAAVMAFGSILEGPEP 397 (859)
T ss_pred hHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHHhcccchhhhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCch
Confidence 4788888888877 55666777888888777655555544455567778887787666666778999998874 3
Q ss_pred CCc-cchHHHHHHHHHhCCCC-------ChhhHHHHHHHHHHhhhhcccccchhhhhhhhhcccCCCccccccccccccc
Q 001839 80 NNF-TLIGRNYRNLCQILPDV-------EEWGQILLIEILLRYVVASHGLVKESIMSSLLCIESSHSEKDVFDVNVALED 151 (1007)
Q Consensus 80 ~rl-dLihk~yrkLc~~L~d~-------dEWgQv~iL~lL~rY~r~~~~~~kp~~~f~~~~~~~~~~~~~~~~~~~~l~~ 151 (1007)
+++ .+.+.....+++++.|- .+|.--.|.+.+..-+- . +
T Consensus 398 ~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~-n--------------------~------------ 444 (859)
T KOG1241|consen 398 DKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEAII-N--------------------Q------------ 444 (859)
T ss_pred hhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhchhhcc-c--------------------H------------
Confidence 333 34555666777777654 34443333333321110 0 0
Q ss_pred CCCCCCccchhhhhhhccccccccccccccCCCcccccccccCccccCCCCChhHHHHHHhhcccccCCChHHHHHHHHH
Q 001839 152 NGIPSRTYDSELVNLVSRSYIEGLGEYLTRSSDTNARSSDLNGARFTSGKTNDDVKLLLQCTSPLLWSHNSAVVLAAAGV 231 (1007)
Q Consensus 152 q~~~~~~~~~~~~~~~~~~~~~~~de~~~~~~~~~~~~~~~~~~~~~~~~~D~D~~lLL~~~~pLLqS~NsAVVlaaa~l 231 (1007)
+. + .-.+.++.--| +..|=|.-.|+..
T Consensus 445 -------------------------~~-----------------------l----~~~l~~l~~gL-~DePrva~N~CWA 471 (859)
T KOG1241|consen 445 -------------------------EL-----------------------L----QSKLSALLEGL-NDEPRVASNVCWA 471 (859)
T ss_pred -------------------------hh-----------------------h----hHHHHHHHHHh-hhCchHHHHHHHH
Confidence 00 0 00111111111 2235566666666
Q ss_pred HHhcC-------CH--------HHHHHHHHHHHHhhc----CCCCchhhHHHHHHHHHHHCCCccccccceeeeccCCCH
Q 001839 232 HWIMS-------PK--------EDVKRIVKPLLFILR----SSGASKYVVLCNIQVFAKALPHLFVPHYEDFFVSSSDSY 292 (1007)
Q Consensus 232 ~~~la-------p~--------~~l~~~~~pLv~LL~----S~~eiqyvvL~~I~~i~~~~p~lF~~~l~~Ffv~~~Dp~ 292 (1007)
|..++ +. ..+.-+++.|+.--. ...|.|-.+...+-.|++..|+...+-+.
T Consensus 472 f~~Laea~~eA~~s~~qt~~~t~~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st~~vy~~v~---------- 541 (859)
T KOG1241|consen 472 FISLAEAAYEAAVSNGQTDPATPFYEAIIGSLLKVTDRADGNQSNLRSAAYEALMELIKNSTDDVYPMVQ---------- 541 (859)
T ss_pred HHHHHHHHHHhccCCCCCCccchhHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHcCcHHHHHHHH----------
Confidence 65543 11 245667777775542 24788999999999999888865544432
Q ss_pred HHHHHHHHHHHhccCC--CCH-----HHHHHHHHHhhccCChhHHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhcc
Q 001839 293 QSKALKLEILSSIVTE--SSI-----SSVFKEFQDYIRDPDRRFAADTVAAIGLCARKLPKMANTCVEGLLALIRQELLT 365 (1007)
Q Consensus 293 ~IK~lKLeIL~~Lane--~Ni-----~~IL~EL~~Yv~d~D~~fv~~aI~AIG~~A~k~p~~a~~cl~~Ll~LLs~~~~~ 365 (1007)
..-+-|+..|-+- +++ ..=++||+.-+-. .-...+ .+.+..++++++..+..+++++...
T Consensus 542 ---~~~l~il~kl~q~i~~~~l~~~dr~q~~eLQs~Lc~----~Lq~i~---rk~~~~~~~~~d~iM~lflri~~s~--- 608 (859)
T KOG1241|consen 542 ---KLTLVILEKLDQTISSQILSLADRAQLNELQSLLCN----TLQSII---RKVGSDIREVSDQIMGLFLRIFESK--- 608 (859)
T ss_pred ---HHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHH----HHHHHH---HHccccchhHHHHHHHHHHHHHcCC---
Confidence 2222333322100 000 1123344432210 111122 2334477888899999999988741
Q ss_pred ccccCCCCCccchhh-HHHHHHHHHHcCCchHH--------HHHHhhhccCchhhHHhhhhhccccccCCC--CccccHH
Q 001839 366 SDIESGNGEADVLIQ-SIISIKSIIKQDPSCHE--------KLFRSLDSIKVPEARVMIIWMVGEYSSVGV--KIPRMLT 434 (1007)
Q Consensus 366 s~~~~~~~~~~vV~E-sVvvIk~Llq~~P~~~~--------~L~~~ld~I~~p~ArAsIIWLLGEY~~~~e--~ip~ia~ 434 (1007)
+..+|.| +...+-.++..--..+. .|.+-+...++-..-++.+=++|.-+...+ ..|+ +.
T Consensus 609 --------~s~~v~e~a~laV~tl~~~Lg~~F~kym~~f~pyL~~gL~n~~e~qVc~~aVglVgdl~raL~~~i~py-~d 679 (859)
T KOG1241|consen 609 --------RSAVVHEEAFLAVSTLAESLGKGFAKYMPAFKPYLLMGLSNFQEYQVCAAAVGLVGDLARALEDDILPY-CD 679 (859)
T ss_pred --------ccccchHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhhhhhH-HH
Confidence 2233443 44444444432211121 255555556666777888899999875322 3565 77
Q ss_pred HHHHHHHHhhccC--cHHHHHHHHHHHHHHhhhc
Q 001839 435 TVLKYLAWCFKSE--AVETKLQILNTTIKVLLCA 466 (1007)
Q Consensus 435 DvLR~l~k~F~~E--~~~VKlqILtlaaKL~~~~ 466 (1007)
++...|++...++ +..||-+||..+.-+.+.-
T Consensus 680 ~~mt~Lvq~Lss~~~hR~vKP~IlS~FgDIAlaI 713 (859)
T KOG1241|consen 680 ELMTVLVQCLSSPNLHRNVKPAILSVFGDIALAI 713 (859)
T ss_pred HHHHHHHHHccCccccccccchHHHHHHHHHHHH
Confidence 8888999888776 5689999999998886643
No 50
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.36 E-value=7.6 Score=47.07 Aligned_cols=240 Identities=18% Similarity=0.140 Sum_probs=156.0
Q ss_pred hhc-CCCChhHHHHHHHHHHHHhhcCchh----hHhhHHHHHHHHhcCCChhHHHHHHHHHHHhCCCCc-----cchHHH
Q 001839 19 KCA-RDPSVFVRKCAANALPKLHELRQEE----ITSAIEEIVGILLNDRSPGVVGAAAAAFASICPNNF-----TLIGRN 88 (1007)
Q Consensus 19 k~~-~D~SPYVRKtAA~AI~Kly~ldpe~----~~~~LieiL~~LL~D~~p~VvgsAv~Af~EIcP~rl-----dLihk~ 88 (1007)
+|+ .+.+|-+|..||-|+..+-.-..+. -...-..++-.||...+.-|.--|+-|+-.|--+.. =+-++.
T Consensus 116 ~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~ 195 (514)
T KOG0166|consen 116 EFLSRDDNPTLQFEAAWALTNIASGTSEQTKVVVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGA 195 (514)
T ss_pred HHHccCCChhHHHHHHHHHHHHhcCchhhccccccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcc
Confidence 344 6889999999999999998876632 111233456679999999999999999999976542 223445
Q ss_pred HHHHHHhCCCCChhhHHHHHHH----HHHhhhhcccccchhhhhhhhhcccCCCcccccccccccccCCCCCCccchhhh
Q 001839 89 YRNLCQILPDVEEWGQILLIEI----LLRYVVASHGLVKESIMSSLLCIESSHSEKDVFDVNVALEDNGIPSRTYDSELV 164 (1007)
Q Consensus 89 yrkLc~~L~d~dEWgQv~iL~l----L~rY~r~~~~~~kp~~~f~~~~~~~~~~~~~~~~~~~~l~~q~~~~~~~~~~~~ 164 (1007)
...|+.+|..-+. +.+++- |...||... |.
T Consensus 196 l~pLl~~l~~~~~---~~~lRn~tW~LsNlcrgk~----P~--------------------------------------- 229 (514)
T KOG0166|consen 196 LDPLLRLLNKSDK---LSMLRNATWTLSNLCRGKN----PS--------------------------------------- 229 (514)
T ss_pred hHHHHHHhccccc---hHHHHHHHHHHHHHHcCCC----CC---------------------------------------
Confidence 5666666665555 222222 222332110 00
Q ss_pred hhhccccccccccccccCCCcccccccccCccccCCCCChhHHHHHHhhcccccCCChHHHHHHHHHHHhcC--CHHHHH
Q 001839 165 NLVSRSYIEGLGEYLTRSSDTNARSSDLNGARFTSGKTNDDVKLLLQCTSPLLWSHNSAVVLAAAGVHWIMS--PKEDVK 242 (1007)
Q Consensus 165 ~~~~~~~~~~~de~~~~~~~~~~~~~~~~~~~~~~~~~D~D~~lLL~~~~pLLqS~NsAVVlaaa~l~~~la--p~~~l~ 242 (1007)
|. + .-++-+|..+.-||+|..+-|.--++-+.-|++ +.+.++
T Consensus 230 ----------P~-------------------------~-~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq 273 (514)
T KOG0166|consen 230 ----------PP-------------------------F-DVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQ 273 (514)
T ss_pred ----------Cc-------------------------H-HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHH
Confidence 00 0 123567888999999999999988888877775 444333
Q ss_pred -----HHHHHHHHhhcC-CCCchhhHHHHHHHHHHH---------CCCccccccceeeeccCCCHHHHHHHHHHHHhccC
Q 001839 243 -----RIVKPLLFILRS-SGASKYVVLCNIQVFAKA---------LPHLFVPHYEDFFVSSSDSYQSKALKLEILSSIVT 307 (1007)
Q Consensus 243 -----~~~~pLv~LL~S-~~eiqyvvL~~I~~i~~~---------~p~lF~~~l~~Ffv~~~Dp~~IK~lKLeIL~~Lan 307 (1007)
.++.-|+.||.. ++.++--+|+.|--|+.- ..+. -|++..++- .+....||+..-=+|++++-
T Consensus 274 ~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~-L~~l~~ll~-~s~~~~ikkEAcW~iSNItA 351 (514)
T KOG0166|consen 274 MVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQVVINSGA-LPVLSNLLS-SSPKESIKKEACWTISNITA 351 (514)
T ss_pred HHHHccchHHHHHHHcCCCcccccHHHhhccceeeccHHHHHHHHhcCh-HHHHHHHhc-cCcchhHHHHHHHHHHHhhc
Confidence 355678888865 577887888877554432 1222 233333321 12334599999999999875
Q ss_pred CCCHHH--------HHHHHHHhhccCChhHHHHHHHHHHHHHHh
Q 001839 308 ESSISS--------VFKEFQDYIRDPDRRFAADTVAAIGLCARK 343 (1007)
Q Consensus 308 e~Ni~~--------IL~EL~~Yv~d~D~~fv~~aI~AIG~~A~k 343 (1007)
.|..+ ++..|.+-+...+.+..++|.-||+.++..
T Consensus 352 -G~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAawaIsN~ts~ 394 (514)
T KOG0166|consen 352 -GNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAAWAISNLTSS 394 (514)
T ss_pred -CCHHHHHHHHHcccHHHHHHHHhccchHHHHHHHHHHHhhccc
Confidence 55532 456777777788899999999999987654
No 51
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=93.03 E-value=3.1 Score=46.86 Aligned_cols=131 Identities=18% Similarity=0.246 Sum_probs=90.0
Q ss_pred HHHHHHHH-HhhccCChhHHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhccccccCCCCCccchhhHHHHHHHHHH
Q 001839 312 SSVFKEFQ-DYIRDPDRRFAADTVAAIGLCARKLPKMANTCVEGLLALIRQELLTSDIESGNGEADVLIQSIISIKSIIK 390 (1007)
Q Consensus 312 ~~IL~EL~-~Yv~d~D~~fv~~aI~AIG~~A~k~p~~a~~cl~~Ll~LLs~~~~~s~~~~~~~~~~vV~EsVvvIk~Llq 390 (1007)
..+++.|. -.+++.|..+...+++++|.|+.-..+.+...+..++..++. +++.+-..++.+|-+++.
T Consensus 25 ~~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a~~~l~l~~~~~~~-----------~~~~v~~~al~~l~Dll~ 93 (298)
T PF12719_consen 25 ESLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKELAKEHLPLFLQALQK-----------DDEEVKITALKALFDLLL 93 (298)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHh-----------CCHHHHHHHHHHHHHHHH
Confidence 37788776 466888899999999999999999999999999999988852 233344456666777776
Q ss_pred cCCchHHHHHHhhhccCchhhHHhhhhhccccccCCCCccccHHHHHHHHHHhhccCcHHHHHHHHHHHHHHhhhcCCCC
Q 001839 391 QDPSCHEKLFRSLDSIKVPEARVMIIWMVGEYSSVGVKIPRMLTTVLKYLAWCFKSEAVETKLQILNTTIKVLLCAKGGD 470 (1007)
Q Consensus 391 ~~P~~~~~L~~~ld~I~~p~ArAsIIWLLGEY~~~~e~ip~ia~DvLR~l~k~F~~E~~~VKlqILtlaaKL~~~~p~e~ 470 (1007)
.|... .++....+. + .. -...+++.+.+.+..+..+++.......+||++...-.+
T Consensus 94 ~~g~~------~~~~~~~~~----------~------~~--~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~ 149 (298)
T PF12719_consen 94 THGID------IFDSESDND----------E------SV--DSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISD 149 (298)
T ss_pred HcCch------hccchhccC----------c------cc--hHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCc
Confidence 65421 111111111 1 11 135667777777777788999999999999999875444
Q ss_pred -hHHHHHH
Q 001839 471 -MWTITRL 477 (1007)
Q Consensus 471 -~~~i~~L 477 (1007)
...+..|
T Consensus 150 ~~~vL~~L 157 (298)
T PF12719_consen 150 PPKVLSRL 157 (298)
T ss_pred HHHHHHHH
Confidence 3344443
No 52
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=92.60 E-value=51 Score=44.55 Aligned_cols=106 Identities=20% Similarity=0.293 Sum_probs=59.5
Q ss_pred CCCchhh-HHHHHHHHHHHCCCccc-cccceeee------ccCCCHHHHHHHHHHHHh----ccCCCC-HHHHHH-HHHH
Q 001839 255 SGASKYV-VLCNIQVFAKALPHLFV-PHYEDFFV------SSSDSYQSKALKLEILSS----IVTESS-ISSVFK-EFQD 320 (1007)
Q Consensus 255 ~~eiqyv-vL~~I~~i~~~~p~lF~-~~l~~Ffv------~~~Dp~~IK~lKLeIL~~----Lane~N-i~~IL~-EL~~ 320 (1007)
..+++++ .+..+..++..+|.+|. .|+...+. .......+-..-+.||-. +.+..+ +-.=|+ -|..
T Consensus 1049 ~~~~~~~~~lstL~~FskirP~Llt~khv~tL~PYL~s~~~t~~~~~fl~~vi~Ile~VlPlv~~~sesfL~sLEe~L~~ 1128 (1692)
T KOG1020|consen 1049 ESEVRLLAYLSTLFVFSKIRPQLLTKKHVITLQPYLTSKASTIEEAQFLYYVIQILECVLPLVANPSESFLASLEEDLLK 1128 (1692)
T ss_pred cchhHHHHHHHHHHHHHhcCchhccHHHHHHhhhHHhccccchHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHH
Confidence 3555554 45667888999999988 55443322 111222233333344333 222221 111122 2455
Q ss_pred hhccCChhHHHHHHHHHHHHHHhCc---ccHHHHHHHHHHHHH
Q 001839 321 YIRDPDRRFAADTVAAIGLCARKLP---KMANTCVEGLLALIR 360 (1007)
Q Consensus 321 Yv~d~D~~fv~~aI~AIG~~A~k~p---~~a~~cl~~Ll~LLs 360 (1007)
-+.......+..++-++|.+|.++- +.+..|+..+++.|.
T Consensus 1129 ~i~k~g~a~V~~~vsCl~sl~~k~~~~~~~v~~cf~~~~k~le 1171 (1692)
T KOG1020|consen 1129 RIVKMGMATVVEAVSCLGSLATKRTDGAKVVKACFSCYLKLLE 1171 (1692)
T ss_pred HHHhcchHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHH
Confidence 5555666778888899999998754 455577777777775
No 53
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=92.59 E-value=7.6 Score=47.45 Aligned_cols=110 Identities=22% Similarity=0.190 Sum_probs=84.7
Q ss_pred chhhhHHHHHHHHhhcCCCChhHHHHHHHHHHHHhh-cCchhhHhhHHHHHHHHhcC--CChhHHHHHHHHHHHhCCCCc
Q 001839 6 LHVISPLVLVAVGKCARDPSVFVRKCAANALPKLHE-LRQEEITSAIEEIVGILLND--RSPGVVGAAAAAFASICPNNF 82 (1007)
Q Consensus 6 Vp~I~piv~~aIkk~~~D~SPYVRKtAA~AI~Kly~-ldpe~~~~~LieiL~~LL~D--~~p~VvgsAv~Af~EIcP~rl 82 (1007)
-|-|+|+ +..|-.|..|..++||.+|.+|+--+-+ +.+..-+.-|...|..++.+ ++.+.+...+-++.++-|..+
T Consensus 211 EPyiv~~-lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~aVK~llpsll~~l~~~kWrtK~aslellg~m~~~ap~qL 289 (569)
T KOG1242|consen 211 EPYIVPI-LPSILTNFGDKINKVREAAVEAAKAIMRCLSAYAVKLLLPSLLGSLLEAKWRTKMASLELLGAMADCAPKQL 289 (569)
T ss_pred CchHHhh-HHHHHHHhhccchhhhHHHHHHHHHHHHhcCcchhhHhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhchHHH
Confidence 3555554 4577789999999999999988876554 45533556666777777777 788888888888888889887
Q ss_pred cchH-HHHHHHHHhCCCCChhhHHHHHHHHHHhhh
Q 001839 83 TLIG-RNYRNLCQILPDVEEWGQILLIEILLRYVV 116 (1007)
Q Consensus 83 dLih-k~yrkLc~~L~d~dEWgQv~iL~lL~rY~r 116 (1007)
++.- ...+.|-..|-|..+=-|-.-+..|++|+.
T Consensus 290 s~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~s 324 (569)
T KOG1242|consen 290 SLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGS 324 (569)
T ss_pred HHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHH
Confidence 7644 467888899988888888888889998874
No 54
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=91.91 E-value=5.4 Score=50.36 Aligned_cols=279 Identities=15% Similarity=0.200 Sum_probs=156.9
Q ss_pred HHHhhcccccCCChHHHHHHHHHHHhcCCHHH----HH--HHHHHHHHhhcCCCCchhhHHHHHHHHHHH--CCCccc--
Q 001839 209 LLQCTSPLLWSHNSAVVLAAAGVHWIMSPKED----VK--RIVKPLLFILRSSGASKYVVLCNIQVFAKA--LPHLFV-- 278 (1007)
Q Consensus 209 LL~~~~pLLqS~NsAVVlaaa~l~~~lap~~~----l~--~~~~pLv~LL~S~~eiqyvvL~~I~~i~~~--~p~lF~-- 278 (1007)
++..+..+|++.|.-++-.+.++.+.++-... +- .++..|+.||.. ++.+.+++..+..|+.. ...+|.
T Consensus 332 iV~kL~kLl~s~~~~l~~~aLrlL~NLSfd~~~R~~mV~~GlIPkLv~LL~d-~~~~~val~iLy~LS~dd~~r~~f~~T 410 (708)
T PF05804_consen 332 IVEKLLKLLPSENEDLVNVALRLLFNLSFDPELRSQMVSLGLIPKLVELLKD-PNFREVALKILYNLSMDDEARSMFAYT 410 (708)
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHhCcCHHHHHHHHHCCCcHHHHHHhCC-CchHHHHHHHHHHhccCHhhHHHHhhc
Confidence 46667788999999999999999999874322 22 256788999975 56778888888888753 234553
Q ss_pred ---cccceeeeccCCCHHHHHHHHHHHHhccC-CCCHHHHHH-----HHHHhhccCChhHHHHHHHHHHHHHHhCcccHH
Q 001839 279 ---PHYEDFFVSSSDSYQSKALKLEILSSIVT-ESSISSVFK-----EFQDYIRDPDRRFAADTVAAIGLCARKLPKMAN 349 (1007)
Q Consensus 279 ---~~l~~Ffv~~~Dp~~IK~lKLeIL~~Lan-e~Ni~~IL~-----EL~~Yv~d~D~~fv~~aI~AIG~~A~k~p~~a~ 349 (1007)
|.+-.......++ .+...-+-++.+|+. +.|++.|.+ -|...+-.....+.-+.||.| ++.-+..-.
T Consensus 411 dcIp~L~~~Ll~~~~~-~v~~eliaL~iNLa~~~rnaqlm~~g~gL~~L~~ra~~~~D~lLlKlIRNi---S~h~~~~k~ 486 (708)
T PF05804_consen 411 DCIPQLMQMLLENSEE-EVQLELIALLINLALNKRNAQLMCEGNGLQSLMKRALKTRDPLLLKLIRNI---SQHDGPLKE 486 (708)
T ss_pred chHHHHHHHHHhCCCc-cccHHHHHHHHHHhcCHHHHHHHHhcCcHHHHHHHHHhcccHHHHHHHHHH---HhcCchHHH
Confidence 2332332222332 344455677777775 567766654 233343333334444555555 434333333
Q ss_pred HHHHHHHHHHHhhhccccccCCCCCccchhhHHHHHHHHHHcCCchHHH------HHHhh-hcc----CchhhHHhhhhh
Q 001839 350 TCVEGLLALIRQELLTSDIESGNGEADVLIQSIISIKSIIKQDPSCHEK------LFRSL-DSI----KVPEARVMIIWM 418 (1007)
Q Consensus 350 ~cl~~Ll~LLs~~~~~s~~~~~~~~~~vV~EsVvvIk~Llq~~P~~~~~------L~~~l-d~I----~~p~ArAsIIWL 418 (1007)
..++++..|+..- . . ..++..+.|++-.+.+|-..+.+ ... ++..+ +.+ ..++..--++=+
T Consensus 487 ~f~~~i~~L~~~v--~-~----~~~ee~~vE~LGiLaNL~~~~ld-~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~ 558 (708)
T PF05804_consen 487 LFVDFIGDLAKIV--S-S----GDSEEFVVECLGILANLTIPDLD-WAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVIL 558 (708)
T ss_pred HHHHHHHHHHHHh--h-c----CCcHHHHHHHHHHHHhcccCCcC-HHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHH
Confidence 3444444443320 0 0 11345788887777766432221 111 22222 112 223333334455
Q ss_pred ccccccCCC---Cc--cccHHHHHHHHHHhhccCcHHHHHHHHHHHHHHhhhcCCCChHHH---HHHHHHHHHHHccCCC
Q 001839 419 VGEYSSVGV---KI--PRMLTTVLKYLAWCFKSEAVETKLQILNTTIKVLLCAKGGDMWTI---TRLFSYLLELAECDLN 490 (1007)
Q Consensus 419 LGEY~~~~e---~i--p~ia~DvLR~l~k~F~~E~~~VKlqILtlaaKL~~~~p~e~~~~i---~~L~qyvLeLak~D~n 490 (1007)
+|--+..-. .+ ..+++.++..| +=.+|+++.-+||+-++-++..+.+. .+.+ ..+..|++.+ ..|.|
T Consensus 559 ~gtla~d~~~A~lL~~sgli~~Li~LL--~~kqeDdE~VlQil~~f~~ll~h~~t--r~~ll~~~~~~~ylidL-~~d~N 633 (708)
T PF05804_consen 559 LGTLASDPECAPLLAKSGLIPTLIELL--NAKQEDDEIVLQILYVFYQLLFHEET--REVLLKETEIPAYLIDL-MHDKN 633 (708)
T ss_pred HHHHHCCHHHHHHHHhCChHHHHHHHH--HhhCchHHHHHHHHHHHHHHHcChHH--HHHHHhccchHHHHHHH-hcCCC
Confidence 565432100 00 12233333333 22367889999999999999877543 1111 2466788886 47899
Q ss_pred hhHHhHHHHHHHHcc
Q 001839 491 YDVRDRARFFKKLFS 505 (1007)
Q Consensus 491 ~DVRDRArfy~~LL~ 505 (1007)
.+||.=|-.-.-++.
T Consensus 634 ~~ir~~~d~~Ldii~ 648 (708)
T PF05804_consen 634 AEIRKVCDNALDIIA 648 (708)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999988887777664
No 55
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=91.88 E-value=15 Score=45.58 Aligned_cols=74 Identities=12% Similarity=0.106 Sum_probs=56.8
Q ss_pred hhhHHHHHHHHhhcCCCChhHHHHHHHHHHHHhhcCchhhHhhHHHHHHHHhcCCChhHHHHHHHHHHHhCCCC
Q 001839 8 VISPLVLVAVGKCARDPSVFVRKCAANALPKLHELRQEEITSAIEEIVGILLNDRSPGVVGAAAAAFASICPNN 81 (1007)
Q Consensus 8 ~I~piv~~aIkk~~~D~SPYVRKtAA~AI~Kly~ldpe~~~~~LieiL~~LL~D~~p~VvgsAv~Af~EIcP~r 81 (1007)
....++=.-+-+++.|.+|.+|-+.-+-|.-+....--..-+++.+.|..||.-.+....-.|+-|+..||.+.
T Consensus 86 ~~~~yiKs~~l~~lgd~~~lIr~tvGivITTI~s~~~~~~wpelLp~L~~~L~s~d~n~~EgA~~AL~KIcEDs 159 (885)
T KOG2023|consen 86 EVLDYIKSECLHGLGDASPLIRATVGIVITTIASTGGLQHWPELLPQLCELLDSPDYNTCEGAFGALQKICEDS 159 (885)
T ss_pred HHHHHHHHHHHhhccCchHHHHhhhhheeeeeecccccccchhHHHHHHHHhcCCcccccchhHHHHHHHHhhh
Confidence 45666677778899999999999988777777665331245677777888888777777888999999999775
No 56
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=91.72 E-value=0.43 Score=42.85 Aligned_cols=56 Identities=29% Similarity=0.249 Sum_probs=39.0
Q ss_pred HHHHHHHhhcCCCChhHHHHHHHHHHHHhhcCchhhHhhHHHHHHHHhc-CCChhHHHHHHHHH
Q 001839 12 LVLVAVGKCARDPSVFVRKCAANALPKLHELRQEEITSAIEEIVGILLN-DRSPGVVGAAAAAF 74 (1007)
Q Consensus 12 iv~~aIkk~~~D~SPYVRKtAA~AI~Kly~ldpe~~~~~LieiL~~LL~-D~~p~VvgsAv~Af 74 (1007)
-++..+.+.+.|.+|.||..|+.++.++- + +..++.|.+++. |.+..|-.+|+.|+
T Consensus 31 ~~~~~L~~~l~d~~~~vr~~a~~aL~~i~--~-----~~~~~~L~~~l~~~~~~~vr~~a~~aL 87 (88)
T PF13646_consen 31 EAIPALIELLKDEDPMVRRAAARALGRIG--D-----PEAIPALIKLLQDDDDEVVREAAAEAL 87 (88)
T ss_dssp HHHHHHHHHHTSSSHHHHHHHHHHHHCCH--H-----HHTHHHHHHHHTC-SSHHHHHHHHHHH
T ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHHhC--C-----HHHHHHHHHHHcCCCcHHHHHHHHhhc
Confidence 34555666779999999999999999772 1 234455556665 45667777787775
No 57
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=91.10 E-value=47 Score=41.06 Aligned_cols=68 Identities=26% Similarity=0.204 Sum_probs=48.0
Q ss_pred hHHHHHHHHhhcCCCChhHHHHHHHHHHHHhhc-CchhhHhhHHHHHHHHh---cCCChhHHHHHHHHHHHhC
Q 001839 10 SPLVLVAVGKCARDPSVFVRKCAANALPKLHEL-RQEEITSAIEEIVGILL---NDRSPGVVGAAAAAFASIC 78 (1007)
Q Consensus 10 ~piv~~aIkk~~~D~SPYVRKtAA~AI~Kly~l-dpe~~~~~LieiL~~LL---~D~~p~VvgsAv~Af~EIc 78 (1007)
+.-++.+|++|+.|.+-.||=-+|+|+.-++.+ .| --.+++.+++.-|- +-+---++.+-+.|.--|.
T Consensus 356 l~~l~~ci~~~l~D~~~~vRi~tA~alS~lae~~~P-ygie~fd~vl~pLw~g~~~hrgk~l~sfLkA~g~ii 427 (975)
T COG5181 356 LGPLLKCISKLLKDRSRFVRIDTANALSYLAELVGP-YGIEQFDEVLCPLWEGASQHRGKELVSFLKAMGFII 427 (975)
T ss_pred hhhHHHHHHHHhhccceeeeehhHhHHHHHHHhcCC-cchHHHHHHHHHHHHHHHhcCCchHHHHHHHhcccc
Confidence 345788999999999999999999999999987 56 55566666654433 3333455566555553333
No 58
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=90.96 E-value=0.45 Score=50.79 Aligned_cols=145 Identities=14% Similarity=0.134 Sum_probs=91.7
Q ss_pred HHHHHHhhcccccCCChHHHHHHHHHHHhcCC------HHHHHHHHHHHHHhhcC-CCCchhhHHHHHHHHHHHCCCccc
Q 001839 206 VKLLLQCTSPLLWSHNSAVVLAAAGVHWIMSP------KEDVKRIVKPLLFILRS-SGASKYVVLCNIQVFAKALPHLFV 278 (1007)
Q Consensus 206 ~~lLL~~~~pLLqS~NsAVVlaaa~l~~~lap------~~~l~~~~~pLv~LL~S-~~eiqyvvL~~I~~i~~~~p~lF~ 278 (1007)
++.++..+...+.+.+++|+-.|+.++-.++. ...+..++.+|+..+.+ ..-++--+-..|..|+...+ +.
T Consensus 51 l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~--~~ 128 (228)
T PF12348_consen 51 LRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYADILLPPLLKKLGDSKKFIREAANNALDAIIESCS--YS 128 (228)
T ss_dssp HH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS---H-
T ss_pred HHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHCC--cH
Confidence 34556778889999999999999887655432 23467788888888765 45677778888888887666 11
Q ss_pred ccc--ceeeeccCC-CHHHHHHHHHHHHhccCCCC-----------HHHHHHHHHHhhccCChhHHHHHHHHHHHHHHhC
Q 001839 279 PHY--EDFFVSSSD-SYQSKALKLEILSSIVTESS-----------ISSVFKEFQDYIRDPDRRFAADTVAAIGLCARKL 344 (1007)
Q Consensus 279 ~~l--~~Ffv~~~D-p~~IK~lKLeIL~~Lane~N-----------i~~IL~EL~~Yv~d~D~~fv~~aI~AIG~~A~k~ 344 (1007)
+.+ ..+.....+ ...+|..-++.|..+...-+ +..+++-+...+.|.+.++...|-+++..+...+
T Consensus 129 ~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~ 208 (228)
T PF12348_consen 129 PKILLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHF 208 (228)
T ss_dssp -HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHC
Confidence 111 112222333 35799999999999887766 3567888888999999999999999999998888
Q ss_pred cccHHHHH
Q 001839 345 PKMANTCV 352 (1007)
Q Consensus 345 p~~a~~cl 352 (1007)
|.-+...+
T Consensus 209 ~~~a~~~~ 216 (228)
T PF12348_consen 209 PERAESIL 216 (228)
T ss_dssp -HHH----
T ss_pred CHhhccch
Confidence 88876654
No 59
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=90.51 E-value=32 Score=41.13 Aligned_cols=65 Identities=18% Similarity=0.234 Sum_probs=43.0
Q ss_pred HHHHhhhccCchhhHHhhhhhccccccCCCCccccHHHHHHH------HHHhhccCcHHHHHHHHHHHHHHhhhc
Q 001839 398 KLFRSLDSIKVPEARVMIIWMVGEYSSVGVKIPRMLTTVLKY------LAWCFKSEAVETKLQILNTTIKVLLCA 466 (1007)
Q Consensus 398 ~L~~~ld~I~~p~ArAsIIWLLGEY~~~~e~ip~ia~DvLR~------l~k~F~~E~~~VKlqILtlaaKL~~~~ 466 (1007)
.|++.++.=.+|...|..+.=||||+.. .|. .-.++.+ +.+-...+.++||.+.|.+.-|+.+++
T Consensus 357 ~L~~iL~~s~d~~~laVAc~Dige~vr~---~P~-gr~i~~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQklm~~~ 427 (429)
T cd00256 357 ILIHLLETSVDPIILAVACHDIGEYVRH---YPR-GKDVVEQLGGKQRVMRLLNHEDPNVRYEALLAVQKLMVHN 427 (429)
T ss_pred HHHHHHhcCCCcceeehhhhhHHHHHHH---Ccc-HHHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHHhc
Confidence 3667776656888887778999999863 232 1122221 112224678899999999999997653
No 60
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=89.00 E-value=23 Score=42.14 Aligned_cols=89 Identities=16% Similarity=-0.019 Sum_probs=68.3
Q ss_pred HHHHHHhhcCCCChhHHHHHHHHHHHHhhcCchhhHhhHHHHHHHHhcCCChhHHHHHHHHHHHhCCCCccchHHHHHHH
Q 001839 13 VLVAVGKCARDPSVFVRKCAANALPKLHELRQEEITSAIEEIVGILLNDRSPGVVGAAAAAFASICPNNFTLIGRNYRNL 92 (1007)
Q Consensus 13 v~~aIkk~~~D~SPYVRKtAA~AI~Kly~ldpe~~~~~LieiL~~LL~D~~p~VvgsAv~Af~EIcP~rldLihk~yrkL 92 (1007)
++.++.+++.|..+-||..||-|+.++.. ++....|..+|.|.+|.|-.+++.++....++ .+..|
T Consensus 87 ~~~~L~~~L~d~~~~vr~aaa~ALg~i~~-------~~a~~~L~~~L~~~~p~vR~aal~al~~r~~~-------~~~~L 152 (410)
T TIGR02270 87 DLRSVLAVLQAGPEGLCAGIQAALGWLGG-------RQAEPWLEPLLAASEPPGRAIGLAALGAHRHD-------PGPAL 152 (410)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHhcCCc-------hHHHHHHHHHhcCCChHHHHHHHHHHHhhccC-------hHHHH
Confidence 47889999999999999999999997522 33445567789999999998888776653322 46678
Q ss_pred HHhCCCCChhhHHHHHHHHHHhh
Q 001839 93 CQILPDVEEWGQILLIEILLRYV 115 (1007)
Q Consensus 93 c~~L~d~dEWgQv~iL~lL~rY~ 115 (1007)
...|.|-+.--....+..|-...
T Consensus 153 ~~~L~d~d~~Vra~A~raLG~l~ 175 (410)
T TIGR02270 153 EAALTHEDALVRAAALRALGELP 175 (410)
T ss_pred HHHhcCCCHHHHHHHHHHHHhhc
Confidence 88888888887777777776554
No 61
>PF14797 SEEEED: Serine-rich region of AP3B1, clathrin-adaptor complex
Probab=88.88 E-value=0.48 Score=46.07 Aligned_cols=15 Identities=20% Similarity=0.160 Sum_probs=11.2
Q ss_pred CCCCCCCCCCCCCCC
Q 001839 596 EEWTGSSSNGTDDPD 610 (1007)
Q Consensus 596 ~~~~~s~se~~~~~~ 610 (1007)
.+.|||++|+++++.
T Consensus 3 ~~kFYsEsEEeedsS 17 (130)
T PF14797_consen 3 DKKFYSESEEEEDSS 17 (130)
T ss_pred ccccccccccccccc
Confidence 456999999876543
No 62
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=88.51 E-value=75 Score=41.27 Aligned_cols=130 Identities=18% Similarity=0.178 Sum_probs=86.1
Q ss_pred CChhHHHHHHhhcccccCCChHHHHHHHHHHHhcC---CHHHHHHHHHHHHHhhcCC--CCchhhHHHHHHHHHHHCCCc
Q 001839 202 TNDDVKLLLQCTSPLLWSHNSAVVLAAAGVHWIMS---PKEDVKRIVKPLLFILRSS--GASKYVVLCNIQVFAKALPHL 276 (1007)
Q Consensus 202 ~D~D~~lLL~~~~pLLqS~NsAVVlaaa~l~~~la---p~~~l~~~~~pLv~LL~S~--~eiqyvvL~~I~~i~~~~p~l 276 (1007)
+-++|.-+|.+..|.|++.-.||-=-++-+.-|++ +...+..++.-|++=|..+ +..--.-.+.|..++.....-
T Consensus 168 l~~fh~~il~~l~~ql~s~R~aVrKkai~~l~~la~~~~~~ly~~li~~Ll~~L~~~~q~~~~rt~Iq~l~~i~r~ag~r 247 (1233)
T KOG1824|consen 168 LPNFHLSILKCLLPQLQSPRLAVRKKAITALGHLASSCNRDLYVELIEHLLKGLSNRTQMSATRTYIQCLAAICRQAGHR 247 (1233)
T ss_pred CcchHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHhcch
Confidence 34478889999999999999999887777765553 4455667777776666433 222223345666777777777
Q ss_pred cccccceeeeccCCCHHHHHHHHHHHHhccCCCCHHHHHHHHHHhh---ccCChhHHHHHHHHHHHHHHhCccc----HH
Q 001839 277 FVPHYEDFFVSSSDSYQSKALKLEILSSIVTESSISSVFKEFQDYI---RDPDRRFAADTVAAIGLCARKLPKM----AN 349 (1007)
Q Consensus 277 F~~~l~~Ffv~~~Dp~~IK~lKLeIL~~Lane~Ni~~IL~EL~~Yv---~d~D~~fv~~aI~AIG~~A~k~p~~----a~ 349 (1007)
|..|+... +-=+..|. ...|+++....+++++..-.+-|.. ..
T Consensus 248 ~~~h~~~i------------------------------vp~v~~y~~~~e~~dDELrE~~lQale~fl~rcp~ei~p~~p 297 (1233)
T KOG1824|consen 248 FGSHLDKI------------------------------VPLVADYCNKIEEDDDELREYCLQALESFLRRCPKEILPHVP 297 (1233)
T ss_pred hhcccchh------------------------------hHHHHHHhcccccCcHHHHHHHHHHHHHHHHhChhhhcccch
Confidence 77775321 12223455 5667789999999999887776653 34
Q ss_pred HHHHHHHHHHHh
Q 001839 350 TCVEGLLALIRQ 361 (1007)
Q Consensus 350 ~cl~~Ll~LLs~ 361 (1007)
.+++.+++-++.
T Consensus 298 ei~~l~l~yisY 309 (1233)
T KOG1824|consen 298 EIINLCLSYISY 309 (1233)
T ss_pred HHHHHHHHHhcc
Confidence 556666666654
No 63
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.07 E-value=14 Score=46.50 Aligned_cols=199 Identities=14% Similarity=0.167 Sum_probs=108.0
Q ss_pred eEEEEecCCCCCCCCCeEEEEEEEEe-CCCCceeeeEeeccccchhhhhhhhhhhccccccccCCCCCCcccCCcccccC
Q 001839 739 KVYYSFSSEASTISPQLVCLETFFEN-CSSETMSEVTLVDEESHKALDLADLTLATTASSLTSQSDLPTLVPMEEITSLE 817 (1007)
Q Consensus 739 ~v~Y~F~r~p~~~s~~mv~v~l~f~N-~s~~~i~~i~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~f~~i~~l~ 817 (1007)
..+|.|-+--|.|..+||- |...+| .+|..+.|..++... +.| .-.. .-.+-+-|+..+
T Consensus 635 e~e~~v~~vKh~f~~~~V~-qf~~~Ntl~d~~L~~v~vv~~~----~~~-~evl--------------~~i~~~slpy~q 694 (865)
T KOG1078|consen 635 EAEYVVKVVKHVFKDHVVL-QFDCTNTLNDQLLENVSVVLTP----TGG-EEVL--------------EKVPTMSLPYDQ 694 (865)
T ss_pred cceEEeeeeehhhccceEE-EEeccCcchHHHHhhheeeecC----CCC-ceee--------------eeccccCCCCCC
Confidence 4578888889999999984 555566 458888888888653 223 1000 112223445555
Q ss_pred CCCeeEEEEEEEcCCCCccceEEEEEcCCeeeeE-EecCccc----------ccccccCCHHHHHHHhhcCC--CC----
Q 001839 818 PGQTMKRILEVRFHHHLLPLKLALHCNGKKLPVK-LRPDIGY----------FIKPVPMDMETFIEMESRLP--GM---- 880 (1007)
Q Consensus 818 p~~~~~~~~~idF~~~~~~~~~~l~~~~~~~~v~-i~p~vge----------l~~p~~ms~~~f~~~~~~L~--GM---- 880 (1007)
||... .-+.|.|..-.+-=.=.+.+.+|.|+ +-|.-|| -+-++..+..||.++-.+-- +-
T Consensus 695 p~~~~---tl~~~p~~~p~~v~~sf~~tlkFtvkdcdp~TgepdedGyeDEY~LEdlevtv~D~iqkv~k~NF~aawde~ 771 (865)
T KOG1078|consen 695 PGSAF---TLVEFPKDDPWAIAEGFGNTLKFTVKDCDPNTGEPDDEGYEDEYVLEDLEVTVGDFVQKVRKSNFPAAWDEL 771 (865)
T ss_pred CcceE---EEEEcCCCCchhhhccceeeEEEEEEecCCCCCCCCccCcccceeeeceeeehhhhhhHhhcccchhhHHhc
Confidence 55544 34566654332222222334445432 3344443 56677777777766554421 11
Q ss_pred -cccccceecccCcCcccccccchhhcchhhhhhHHHHHHHhhhcccceeeecCcccccccCCCC--CCc--eeeeeccc
Q 001839 881 -FEYARSCTFTDHLGEVDKDTDESSLLKDKYLVICESLASKMLSNANIFLVSVDMPVAAKFDDAS--GLS--LRFSSEIL 955 (1007)
Q Consensus 881 -~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~an~~~v~~~~~~~~~~~~~~--~~~--~rfa~~t~ 955 (1007)
+|-...+.+.. . -.-+.-+.+|+..-++..+- .+ +..+ .+. +-.|| +.
T Consensus 772 ~~e~eetF~Ls~----------------~---~tl~eAv~~Ii~~LgMqpcE------~s-d~vPenknsHtl~LsG-~f 824 (865)
T KOG1078|consen 772 GFEAEETFNLST----------------V---KSIQEAVKKIIDLLGMQPCE------RT-EKVPENKNSHTLLLSG-VF 824 (865)
T ss_pred Ccchheeeeccc----------------c---chHHHHHHHHHHHhCCcccc------cc-ccCCCCCCceEEEEee-ee
Confidence 44433333321 0 01245567787766665332 12 2111 222 23677 78
Q ss_pred cCCceEEEEEEeccccCCCcccEEEEcccchhH
Q 001839 956 GNSVPCLITITVEGKCSEPLKVSAKVNCEETVF 988 (1007)
Q Consensus 956 ~~~~~~lit~~~~~~~~~~~~~~~~vn~e~~v~ 988 (1007)
-.|..+||.+.+--..++ .+.+|+|-||+--.
T Consensus 825 rgG~~vlvr~~ma~s~~~-vtm~Vtvrs~e~~~ 856 (865)
T KOG1078|consen 825 RGGYKVLVRAKMALSSGG-ITMKVTVRSEDELV 856 (865)
T ss_pred eCCceEEEeeeeeecCCC-cEEEEEEecCCccH
Confidence 889999999985222222 57899999987544
No 64
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=87.08 E-value=0.68 Score=38.49 Aligned_cols=33 Identities=33% Similarity=0.215 Sum_probs=28.6
Q ss_pred hhhhHHHHHHHHhhcCCCChhHHHHHHHHHHHH
Q 001839 7 HVISPLVLVAVGKCARDPSVFVRKCAANALPKL 39 (1007)
Q Consensus 7 p~I~piv~~aIkk~~~D~SPYVRKtAA~AI~Kl 39 (1007)
...++-++..+.+++.|.++.||.+|+.||.+|
T Consensus 23 ~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 23 QPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 346778888899999999999999999999754
No 65
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=86.85 E-value=1.3 Score=41.23 Aligned_cols=67 Identities=18% Similarity=0.098 Sum_probs=52.7
Q ss_pred HHHHHHHhhcCCCChhHHHHHHHHHHHHhhcCchh----hHhhHHHHHHHHhcCCChhHHHHHHHHHHHhC
Q 001839 12 LVLVAVGKCARDPSVFVRKCAANALPKLHELRQEE----ITSAIEEIVGILLNDRSPGVVGAAAAAFASIC 78 (1007)
Q Consensus 12 iv~~aIkk~~~D~SPYVRKtAA~AI~Kly~ldpe~----~~~~LieiL~~LL~D~~p~VvgsAv~Af~EIc 78 (1007)
-++..+.+++.|.++-||+.|+.++..+..-.+.. ....+++.+..+|++.+..|...|+.+|..+|
T Consensus 49 ~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 49 GGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred CChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 34556667788899999999999999998765421 22335677778899999999999999998887
No 66
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=85.84 E-value=99 Score=38.19 Aligned_cols=112 Identities=19% Similarity=0.217 Sum_probs=79.9
Q ss_pred cccCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcC-CCCchhhHHHHHHHHHHHCCCccccccceeeeccCCCHHH
Q 001839 216 LLWSHNSAVVLAAAGVHWIMSPKEDVKRIVKPLLFILRS-SGASKYVVLCNIQVFAKALPHLFVPHYEDFFVSSSDSYQS 294 (1007)
Q Consensus 216 LLqS~NsAVVlaaa~l~~~lap~~~l~~~~~pLv~LL~S-~~eiqyvvL~~I~~i~~~~p~lF~~~l~~Ffv~~~Dp~~I 294 (1007)
|+...|-.+-+=|+...+.-+..+.+.++++-+..++.. +.+.+.++.+.+..++...|.
T Consensus 348 LIsd~Nr~IstyAITtLLKTGt~e~idrLv~~I~sfvhD~SD~FKiI~ida~rsLsl~Fp~------------------- 408 (898)
T COG5240 348 LISDENRTISTYAITTLLKTGTEETIDRLVNLIPSFVHDMSDGFKIIAIDALRSLSLLFPS------------------- 408 (898)
T ss_pred HhhcccccchHHHHHHHHHcCchhhHHHHHHHHHHHHHhhccCceEEeHHHHHHHHhhCcH-------------------
Confidence 334455555555566666667777889999888888865 678999999999999887663
Q ss_pred HHHHHHHHHhccCCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Q 001839 295 KALKLEILSSIVTESSISSVFKEFQDYIRDPDRRFAADTVAAIGLCARKLPKMANTCVEGLLALIR 360 (1007)
Q Consensus 295 K~lKLeIL~~Lane~Ni~~IL~EL~~Yv~d~D~~fv~~aI~AIG~~A~k~p~~a~~cl~~Ll~LLs 360 (1007)
+|+-+|.-|. .+|. ..-..+|++.+|.||.......|..-+..+..|..++.
T Consensus 409 --k~~s~l~FL~------~~L~------~eGg~eFK~~~Vdaisd~~~~~p~skEraLe~LC~fIE 460 (898)
T COG5240 409 --KKLSYLDFLG------SSLL------QEGGLEFKKYMVDAISDAMENDPDSKERALEVLCTFIE 460 (898)
T ss_pred --HHHHHHHHHH------HHHH------hcccchHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHh
Confidence 2222332221 0111 12345799999999999999999999999999999887
No 67
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=85.42 E-value=2.1 Score=52.52 Aligned_cols=70 Identities=20% Similarity=0.167 Sum_probs=57.8
Q ss_pred hhHHHHHHHHhhcCCCChhHHHHHHHHHHHHhhcCch--hhHhhHHHHHHHHhcCCChhHHHHHHHHHHHhC
Q 001839 9 ISPLVLVAVGKCARDPSVFVRKCAANALPKLHELRQE--EITSAIEEIVGILLNDRSPGVVGAAAAAFASIC 78 (1007)
Q Consensus 9 I~piv~~aIkk~~~D~SPYVRKtAA~AI~Kly~ldpe--~~~~~LieiL~~LL~D~~p~VvgsAv~Af~EIc 78 (1007)
-+.-+|.-+-+-+.|.+||+|-.|.+.+.|+|++... ..+-.+++.+...|.|++..|-.+|+-.|..+.
T Consensus 343 ~~~~Lv~ll~ERl~D~~py~RtKalqv~~kifdl~sk~~~~r~ev~~lv~r~lqDrss~VRrnaikl~SkLL 414 (1128)
T COG5098 343 KLNDLVGLLVERLSDTYPYTRTKALQVLEKIFDLNSKTVGRRHEVIRLVGRRLQDRSSVVRRNAIKLCSKLL 414 (1128)
T ss_pred HHHHHHHHHHHHhhccchHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Confidence 3445666677889999999999999999999998542 355668888888999999999999998887764
No 68
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=85.41 E-value=7.1 Score=41.65 Aligned_cols=173 Identities=17% Similarity=0.096 Sum_probs=95.3
Q ss_pred hcCCCChhHHHHHHHHHHHHhhcC-chhhHhhHH-------HHHHHHhcCCChhHHHHHHHHHHHhCC---CCcc-chHH
Q 001839 20 CARDPSVFVRKCAANALPKLHELR-QEEITSAIE-------EIVGILLNDRSPGVVGAAAAAFASICP---NNFT-LIGR 87 (1007)
Q Consensus 20 ~~~D~SPYVRKtAA~AI~Kly~ld-pe~~~~~Li-------eiL~~LL~D~~p~VvgsAv~Af~EIcP---~rld-Lihk 87 (1007)
--++.++-.|..|..-+-++-.-. +.+..+.+. ..+...+.|..+.|+..|+..+.+++. ..++ .+..
T Consensus 15 ~~~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~ 94 (228)
T PF12348_consen 15 KESESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYADI 94 (228)
T ss_dssp HHT-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHHHH
T ss_pred cCCccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHH
Confidence 447888999999998888886655 223333333 344467788888999999998887752 2221 1112
Q ss_pred HHHHHHHhCCCCChhhHHHHHHHHHHhhhhcccccchhhhhhhhhcccCCCcccccccccccccCCCCCCccchhhhhhh
Q 001839 88 NYRNLCQILPDVEEWGQILLIEILLRYVVASHGLVKESIMSSLLCIESSHSEKDVFDVNVALEDNGIPSRTYDSELVNLV 167 (1007)
Q Consensus 88 ~yrkLc~~L~d~dEWgQv~iL~lL~rY~r~~~~~~kp~~~f~~~~~~~~~~~~~~~~~~~~l~~q~~~~~~~~~~~~~~~ 167 (1007)
.+..|++.+.+-..+-.....+.|..++..
T Consensus 95 ~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~-------------------------------------------------- 124 (228)
T PF12348_consen 95 LLPPLLKKLGDSKKFIREAANNALDAIIES-------------------------------------------------- 124 (228)
T ss_dssp HHHHHHHGGG---HHHHHHHHHHHHHHHTT--------------------------------------------------
T ss_pred HHHHHHHHHccccHHHHHHHHHHHHHHHHH--------------------------------------------------
Confidence 223333333333333333333333322210
Q ss_pred ccccccccccccccCCCcccccccccCccccCCCCChhHHHHHHhhcccccCCChHHHHHHHHHHHhc---CC--H----
Q 001839 168 SRSYIEGLGEYLTRSSDTNARSSDLNGARFTSGKTNDDVKLLLQCTSPLLWSHNSAVVLAAAGVHWIM---SP--K---- 238 (1007)
Q Consensus 168 ~~~~~~~~de~~~~~~~~~~~~~~~~~~~~~~~~~D~D~~lLL~~~~pLLqS~NsAVVlaaa~l~~~l---ap--~---- 238 (1007)
....-++++..+.+.+.+.|+.|-..++..+..+ .+ .
T Consensus 125 ----------------------------------~~~~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~ 170 (228)
T PF12348_consen 125 ----------------------------------CSYSPKILLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQ 170 (228)
T ss_dssp ----------------------------------S-H--HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG-
T ss_pred ----------------------------------CCcHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhc
Confidence 0101145577788889999999999998876544 12 1
Q ss_pred --HHHHHHHHHHHHhhcC-CCCchhhHHHHHHHHHHHCCCc
Q 001839 239 --EDVKRIVKPLLFILRS-SGASKYVVLCNIQVFAKALPHL 276 (1007)
Q Consensus 239 --~~l~~~~~pLv~LL~S-~~eiqyvvL~~I~~i~~~~p~l 276 (1007)
..+..+.+.+..++.. ++++|..+-..+..+....|+-
T Consensus 171 ~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~~ 211 (228)
T PF12348_consen 171 KSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFPER 211 (228)
T ss_dssp -HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-HH
T ss_pred ccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHh
Confidence 1246788888888875 6899999999998888777753
No 69
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=85.31 E-value=12 Score=49.90 Aligned_cols=203 Identities=13% Similarity=0.140 Sum_probs=128.1
Q ss_pred HHHHHHHHHHhcc--CCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHhhhccccccC
Q 001839 294 SKALKLEILSSIV--TESSISSVFKEFQDYIRDPDRRFAADTVAAIGLCARKLP-KMANTCVEGLLALIRQELLTSDIES 370 (1007)
Q Consensus 294 IK~lKLeIL~~La--ne~Ni~~IL~EL~~Yv~d~D~~fv~~aI~AIG~~A~k~p-~~a~~cl~~Ll~LLs~~~~~s~~~~ 370 (1007)
++..=-++++.|. .+.=+..|+-+|...+...+.++..+|+.-+|++-.... ...+++-++...+|..-
T Consensus 238 ~~~~~he~i~~L~~~~p~ll~~vip~l~~eL~se~~~~Rl~a~~lvg~~~~~~~~~l~~~~~~~~~~fl~r~-------- 309 (1266)
T KOG1525|consen 238 LKIKYHELILELWRIAPQLLLAVIPQLEFELLSEQEEVRLKAVKLVGRMFSDKDSQLSETYDDLWSAFLGRF-------- 309 (1266)
T ss_pred hhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhcchhhhcccchHHHHHHHHHh--------
Confidence 3444445555443 344556678888888888888999999999998744322 12234445555555531
Q ss_pred CCCCccchhhHHHHHHHHHHcCCchHHH---HHHhhhccCchhhHHhhhhhccccccCCC-CccccHHHHHHHHHHhhcc
Q 001839 371 GNGEADVLIQSIISIKSIIKQDPSCHEK---LFRSLDSIKVPEARVMIIWMVGEYSSVGV-KIPRMLTTVLKYLAWCFKS 446 (1007)
Q Consensus 371 ~~~~~~vV~EsVvvIk~Llq~~P~~~~~---L~~~ld~I~~p~ArAsIIWLLGEY~~~~e-~ip~ia~DvLR~l~k~F~~ 446 (1007)
.+....|-.++|-.+++++.++|...+. +...-+...|+.-|....-+++.-.-. . .... .+++|..+.++-.+
T Consensus 310 ~D~~~~vR~~~v~~~~~~l~~~~~~~~~~~~~~~l~~~~~D~~~rir~~v~i~~~~v~-~~~l~~-~~~ll~~~~eR~rD 387 (1266)
T KOG1525|consen 310 NDISVEVRMECVESIKQCLLNNPSIAKASTILLALRERDLDEDVRVRTQVVIVACDVM-KFKLVY-IPLLLKLVAERLRD 387 (1266)
T ss_pred ccCChhhhhhHHHHhHHHHhcCchhhhHHHHHHHHHhhcCChhhhheeeEEEEEeehh-Hhhhhh-hHHHHHHHHHHHhh
Confidence 1333457778899999999999987655 111112233455455444444442110 1 1222 34477777777777
Q ss_pred CcHHHHHHHHHHHHHHhhh--c-CCCC-------h---------------HHHHHHHHHHHHHHccCCChhHHhHHHHHH
Q 001839 447 EAVETKLQILNTTIKVLLC--A-KGGD-------M---------------WTITRLFSYLLELAECDLNYDVRDRARFFK 501 (1007)
Q Consensus 447 E~~~VKlqILtlaaKL~~~--~-p~e~-------~---------------~~i~~L~qyvLeLak~D~n~DVRDRArfy~ 501 (1007)
-...||.+.++-++++|-+ . ..++ . ...+.++.++|.......+.+.++|.+-++
T Consensus 388 Kk~~VR~~Am~~LaqlYk~~~~~~~~~~k~~t~~~swIp~kLL~~~y~~~~~~r~~vE~il~~~L~P~~l~~q~Rmk~l~ 467 (1266)
T KOG1525|consen 388 KKIKVRKQAMNGLAQLYKNVYCLRSAGGKEITPPFSWIPDKLLHLYYENDLDDRLLVERILAEYLVPYPLSTQERMKHLY 467 (1266)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhhccCcccccccccccchhHHhhHhhccccHHHHHHHHHHHhhCCCCCCHHHHHHHHH
Confidence 8889999999999999984 1 1100 0 012355667787777888999999999988
Q ss_pred HHccC
Q 001839 502 KLFSH 506 (1007)
Q Consensus 502 ~LL~~ 506 (1007)
.++..
T Consensus 468 ~~l~~ 472 (1266)
T KOG1525|consen 468 QLLAG 472 (1266)
T ss_pred HHHhc
Confidence 88865
No 70
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=85.05 E-value=28 Score=39.46 Aligned_cols=92 Identities=26% Similarity=0.235 Sum_probs=68.3
Q ss_pred HHHHHHHHhhcCCCChhHHHHHHHHHHHHhhcCchhhHhhHHHHHHHHhcCCChhHHHHHHHHHHHhCCCCccchHHHHH
Q 001839 11 PLVLVAVGKCARDPSVFVRKCAANALPKLHELRQEEITSAIEEIVGILLNDRSPGVVGAAAAAFASICPNNFTLIGRNYR 90 (1007)
Q Consensus 11 piv~~aIkk~~~D~SPYVRKtAA~AI~Kly~ldpe~~~~~LieiL~~LL~D~~p~VvgsAv~Af~EIcP~rldLihk~yr 90 (1007)
+.....+.+.+.|.++.||..|+..+..+ . ....++.+..+|.|.++.|-..|+.++-++-... .+.
T Consensus 42 ~~~~~~~~~~l~~~~~~vr~~aa~~l~~~------~-~~~av~~l~~~l~d~~~~vr~~a~~aLg~~~~~~------a~~ 108 (335)
T COG1413 42 PEAADELLKLLEDEDLLVRLSAAVALGEL------G-SEEAVPLLRELLSDEDPRVRDAAADALGELGDPE------AVP 108 (335)
T ss_pred hhhHHHHHHHHcCCCHHHHHHHHHHHhhh------c-hHHHHHHHHHHhcCCCHHHHHHHHHHHHccCChh------HHH
Confidence 45677888999999999999999884422 1 2344556678899999999999999999886432 344
Q ss_pred HHHHhCC-CCChhhHHHHHHHHHHhh
Q 001839 91 NLCQILP-DVEEWGQILLIEILLRYV 115 (1007)
Q Consensus 91 kLc~~L~-d~dEWgQv~iL~lL~rY~ 115 (1007)
.|...|. |.+.|-.......|.+-.
T Consensus 109 ~li~~l~~d~~~~vR~~aa~aL~~~~ 134 (335)
T COG1413 109 PLVELLENDENEGVRAAAARALGKLG 134 (335)
T ss_pred HHHHHHHcCCcHhHHHHHHHHHHhcC
Confidence 5556665 688888777777777653
No 71
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=84.83 E-value=1.2e+02 Score=38.46 Aligned_cols=293 Identities=19% Similarity=0.204 Sum_probs=158.5
Q ss_pred cchhhhHHHHHHHHhhcCCCChhHHHHHHHHHHHHhhcCchh--hHhhHHHHHHH---HhcCCChhHHHHHHHHHHHh--
Q 001839 5 RLHVISPLVLVAVGKCARDPSVFVRKCAANALPKLHELRQEE--ITSAIEEIVGI---LLNDRSPGVVGAAAAAFASI-- 77 (1007)
Q Consensus 5 RVp~I~piv~~aIkk~~~D~SPYVRKtAA~AI~Kly~ldpe~--~~~~LieiL~~---LL~D~~p~VvgsAv~Af~EI-- 77 (1007)
++.-|++-.+..|-+...|++-.||.|||-++.++.+..|+. ....+..++.. -|+| .|-|..++--||..+
T Consensus 399 ~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~D-ePrva~N~CWAf~~Lae 477 (859)
T KOG1241|consen 399 KLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLND-EPRVASNVCWAFISLAE 477 (859)
T ss_pred hhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhhh-CchHHHHHHHHHHHHHH
Confidence 344566777788889999999999999999999999987742 33333333433 4455 799999988887655
Q ss_pred -C----CCC--ccchHHHHHHHHHhCCCCChh-------hHHHHHHHHHHhhhhcccccchhhhhhhhhcccCCCccccc
Q 001839 78 -C----PNN--FTLIGRNYRNLCQILPDVEEW-------GQILLIEILLRYVVASHGLVKESIMSSLLCIESSHSEKDVF 143 (1007)
Q Consensus 78 -c----P~r--ldLihk~yrkLc~~L~d~dEW-------gQv~iL~lL~rY~r~~~~~~kp~~~f~~~~~~~~~~~~~~~ 143 (1007)
| |.+ -+...+.|..+++.|....+- ..+..-+.|+...+..++-+-|...
T Consensus 478 a~~eA~~s~~qt~~~t~~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st~~vy~~v~---------------- 541 (859)
T KOG1241|consen 478 AAYEAAVSNGQTDPATPFYEAIIGSLLKVTDRADGNQSNLRSAAYEALMELIKNSTDDVYPMVQ---------------- 541 (859)
T ss_pred HHHHhccCCCCCCccchhHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHcCcHHHHHHHH----------------
Confidence 3 223 123336777777776543222 1233333332222111000000000
Q ss_pred ccccccccCCCCCCccchhhhhhhccccccccccccccCCCcccccccccCccccCCCCChhHHHHHHhhcccccCCChH
Q 001839 144 DVNVALEDNGIPSRTYDSELVNLVSRSYIEGLGEYLTRSSDTNARSSDLNGARFTSGKTNDDVKLLLQCTSPLLWSHNSA 223 (1007)
Q Consensus 144 ~~~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~de~~~~~~~~~~~~~~~~~~~~~~~~~D~D~~lLL~~~~pLLqS~NsA 223 (1007)
..+.. .+ +..++.++ +..++-+-|.=++- || +
T Consensus 542 ~~~l~----------------il------~kl~q~i~------------------~~~l~~~dr~q~~e----LQ----s 573 (859)
T KOG1241|consen 542 KLTLV----------------IL------EKLDQTIS------------------SQILSLADRAQLNE----LQ----S 573 (859)
T ss_pred HHHHH----------------HH------HHHHHHHH------------------HHhccHhhHHHHHH----HH----H
Confidence 00000 00 00000000 00000000000111 11 1
Q ss_pred HHHHHHHHHH-hcCC--HHHHHHHHHHHHHhhcC--CCCchhhHHHHHHHHHHHCCCccccccceeeec------cCCCH
Q 001839 224 VVLAAAGVHW-IMSP--KEDVKRIVKPLLFILRS--SGASKYVVLCNIQVFAKALPHLFVPHYEDFFVS------SSDSY 292 (1007)
Q Consensus 224 VVlaaa~l~~-~lap--~~~l~~~~~pLv~LL~S--~~eiqyvvL~~I~~i~~~~p~lF~~~l~~Ffv~------~~Dp~ 292 (1007)
+..++.+... .+.+ ++....+.+.|+|++.+ +.-++-=++-.|..++..-..=|..|+..|+.. ..+..
T Consensus 574 ~Lc~~Lq~i~rk~~~~~~~~~d~iM~lflri~~s~~s~~v~e~a~laV~tl~~~Lg~~F~kym~~f~pyL~~gL~n~~e~ 653 (859)
T KOG1241|consen 574 LLCNTLQSIIRKVGSDIREVSDQIMGLFLRIFESKRSAVVHEEAFLAVSTLAESLGKGFAKYMPAFKPYLLMGLSNFQEY 653 (859)
T ss_pred HHHHHHHHHHHHccccchhHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHhhcchHH
Confidence 2223333322 2222 24455677778888876 334555566666677666666677777666532 12335
Q ss_pred HHHHHHHHHHHhccC--CCCHH----HHHHHHHHhhccC--ChhHHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhh
Q 001839 293 QSKALKLEILSSIVT--ESSIS----SVFKEFQDYIRDP--DRRFAADTVAAIGLCARKLPKMANTCVEGLLALIRQE 362 (1007)
Q Consensus 293 ~IK~lKLeIL~~Lan--e~Ni~----~IL~EL~~Yv~d~--D~~fv~~aI~AIG~~A~k~p~~a~~cl~~Ll~LLs~~ 362 (1007)
++-.-.+-+..-|++ ++++- .++.-|...+.++ +.+++-..+-..|.+|..+...-..+++..+.|+.+-
T Consensus 654 qVc~~aVglVgdl~raL~~~i~py~d~~mt~Lvq~Lss~~~hR~vKP~IlS~FgDIAlaIg~~F~~Yl~~vm~llq~a 731 (859)
T KOG1241|consen 654 QVCAAAVGLVGDLARALEDDILPYCDELMTVLVQCLSSPNLHRNVKPAILSVFGDIALAIGADFEPYLEMVMPLLQQA 731 (859)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHccCccccccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 666666766666665 34443 3444455555443 4567777888889999988888888888888888753
No 72
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=84.59 E-value=1.1e+02 Score=37.77 Aligned_cols=394 Identities=15% Similarity=0.094 Sum_probs=209.4
Q ss_pred HHHHHHhhcCCCChhHHHHHHHHHHHHhhcCchhhHhhHHHHHHHHhcCCChhHHHHHHHHHHHhCC---CCcc-chHHH
Q 001839 13 VLVAVGKCARDPSVFVRKCAANALPKLHELRQEEITSAIEEIVGILLNDRSPGVVGAAAAAFASICP---NNFT-LIGRN 88 (1007)
Q Consensus 13 v~~aIkk~~~D~SPYVRKtAA~AI~Kly~ldpe~~~~~LieiL~~LL~D~~p~VvgsAv~Af~EIcP---~rld-Lihk~ 88 (1007)
+...+-.+ .|+++-||++-+-|....+...-+.+...|.++-+.-|+-....-+-+++..++-..- ...| .+|+.
T Consensus 19 ~~~~~~~g-~d~~~~v~~~ml~a~~~~~~~~~~~~v~~l~~~~~~~l~~~~~~~~~~~~~v~~~~~a~~~~~~d~~~~~~ 97 (569)
T KOG1242|consen 19 LLFLVSAG-EDRRIDVRGNMLEAGEAAINQHGDQNVLNLKPCFEQRLNSLHNDNLRNNVVVLEGTLAFHLQIVDPRPISI 97 (569)
T ss_pred ceeecccC-CCcchhhHHhHHHHHHHHHHhhhHHHHHHHHHHHHHHhccchhHHHhhhhHHHHHHHHHhccccCcchhHH
Confidence 33444555 9999999999999998888776545667788877777764333334444444443321 2233 47889
Q ss_pred HHHHHHhCCCCChhhHHHHHHHHHHhhhhcccccchhhhhhhhhcccCCCcccccccccccccCCCCCCccchhhhhhhc
Q 001839 89 YRNLCQILPDVEEWGQILLIEILLRYVVASHGLVKESIMSSLLCIESSHSEKDVFDVNVALEDNGIPSRTYDSELVNLVS 168 (1007)
Q Consensus 89 yrkLc~~L~d~dEWgQv~iL~lL~rY~r~~~~~~kp~~~f~~~~~~~~~~~~~~~~~~~~l~~q~~~~~~~~~~~~~~~~ 168 (1007)
..+|.+.+.-..+.-|-.....|.-|.....+ ++..
T Consensus 98 ~~~~~~~~~tps~~~q~~~~~~l~~~~~~~~~--~~~~------------------------------------------ 133 (569)
T KOG1242|consen 98 IEILLEELDTPSKSVQRAVSTCLPPLVVLSKG--LSGE------------------------------------------ 133 (569)
T ss_pred HHHHHHhcCCCcHHHHHHHHHHhhhHHHHhhc--cCHH------------------------------------------
Confidence 99999999999999999999998877642100 0000
Q ss_pred cccccccccccccCCCcccccccccCccccCCCCChhHHHHHHhhcccccCCChHHHHHHHHHHHhcCCH---HHH--HH
Q 001839 169 RSYIEGLGEYLTRSSDTNARSSDLNGARFTSGKTNDDVKLLLQCTSPLLWSHNSAVVLAAAGVHWIMSPK---EDV--KR 243 (1007)
Q Consensus 169 ~~~~~~~de~~~~~~~~~~~~~~~~~~~~~~~~~D~D~~lLL~~~~pLLqS~NsAVVlaaa~l~~~lap~---~~l--~~ 243 (1007)
.++..+..+|.+.-.+=-..++.-.+.+-.. ..+ ..
T Consensus 134 ---------------------------------------~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~~i~~~~~~~ 174 (569)
T KOG1242|consen 134 ---------------------------------------YVLELLLELLTSTKIAERAGAAYGLAGLVNGLGIESLKEFG 174 (569)
T ss_pred ---------------------------------------HHHHHHHHHhccccHHHHhhhhHHHHHHHcCcHHhhhhhhh
Confidence 0111111122222222222222222221100 000 11
Q ss_pred HHHHHHHhhcC--CCCchhhHHHHHHHHHHHCCCccccccceeee----ccCCC-HHHHHHHHHHHHhc---cCCCCHHH
Q 001839 244 IVKPLLFILRS--SGASKYVVLCNIQVFAKALPHLFVPHYEDFFV----SSSDS-YQSKALKLEILSSI---VTESSISS 313 (1007)
Q Consensus 244 ~~~pLv~LL~S--~~eiqyvvL~~I~~i~~~~p~lF~~~l~~Ffv----~~~Dp-~~IK~lKLeIL~~L---ane~Ni~~ 313 (1007)
+...|-..+.. +...+-.++-+.......-...|+||+..++. +..|. .++|...-+-...+ .+.--++.
T Consensus 175 ~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~aVK~ 254 (569)
T KOG1242|consen 175 FLDNLSKAIIDKKSALNREAALLAFEAAQGNLGPPFEPYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSAYAVKL 254 (569)
T ss_pred HHHHHHHHhcccchhhcHHHHHHHHHHHHHhcCCCCCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcchhhH
Confidence 22333333322 11112144444444444455778888655442 34554 45666555544443 44555555
Q ss_pred HHHHHHHhhccCChhHHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhccccccCCCCCccch---hhHHHHHHHHHH
Q 001839 314 VFKEFQDYIRDPDRRFAADTVAAIGLCARKLPKMANTCVEGLLALIRQELLTSDIESGNGEADVL---IQSIISIKSIIK 390 (1007)
Q Consensus 314 IL~EL~~Yv~d~D~~fv~~aI~AIG~~A~k~p~~a~~cl~~Ll~LLs~~~~~s~~~~~~~~~~vV---~EsVvvIk~Llq 390 (1007)
++--+..-+.+..=.-...+++.+|.++...|...+.|+..++.-++.-.- |....|- .+++..++.++
T Consensus 255 llpsll~~l~~~kWrtK~aslellg~m~~~ap~qLs~~lp~iiP~lsevl~-------DT~~evr~a~~~~l~~~~svi- 326 (569)
T KOG1242|consen 255 LLPSLLGSLLEAKWRTKMASLELLGAMADCAPKQLSLCLPDLIPVLSEVLW-------DTKPEVRKAGIETLLKFGSVI- 326 (569)
T ss_pred hhhhhHHHHHHHhhhhHHHHHHHHHHHHHhchHHHHHHHhHhhHHHHHHHc-------cCCHHHHHHHHHHHHHHHHhh-
Confidence 555544422222234567788899988888899999999999888874211 1122122 23444444444
Q ss_pred cCCchHHHHHHhhhccCchhhHH-hhhhhc--cccccCCC--CccccHHHHHHHHHHhhccCcHHHHHHHHHHHHHHhhh
Q 001839 391 QDPSCHEKLFRSLDSIKVPEARV-MIIWMV--GEYSSVGV--KIPRMLTTVLKYLAWCFKSEAVETKLQILNTTIKVLLC 465 (1007)
Q Consensus 391 ~~P~~~~~L~~~ld~I~~p~ArA-sIIWLL--GEY~~~~e--~ip~ia~DvLR~l~k~F~~E~~~VKlqILtlaaKL~~~ 465 (1007)
.||+....+-.+++-+.+|.++. ..+-.+ ++|.+.++ .+.-++|.+-|.+.++=+.-. --=.+|.--++|++ .
T Consensus 327 dN~dI~~~ip~Lld~l~dp~~~~~e~~~~L~~ttFV~~V~~psLalmvpiL~R~l~eRst~~k-r~t~~IidNm~~Lv-e 404 (569)
T KOG1242|consen 327 DNPDIQKIIPTLLDALADPSCYTPECLDSLGATTFVAEVDAPSLALMVPILKRGLAERSTSIK-RKTAIIIDNMCKLV-E 404 (569)
T ss_pred ccHHHHHHHHHHHHHhcCcccchHHHHHhhcceeeeeeecchhHHHHHHHHHHHHhhccchhh-hhHHHHHHHHHHhh-c
Confidence 35554444556677778776322 122223 34444332 122345666666655322111 12245777788885 3
Q ss_pred cCCCChHHHHHHHHHHHHHHccCCChhHHhHHHHHH
Q 001839 466 AKGGDMWTITRLFSYLLELAECDLNYDVRDRARFFK 501 (1007)
Q Consensus 466 ~p~e~~~~i~~L~qyvLeLak~D~n~DVRDRArfy~ 501 (1007)
.|....+.+..|+-. ++-+.+|..|++|-=|..=+
T Consensus 405 Dp~~lapfl~~Llp~-lk~~~~d~~PEvR~vaarAL 439 (569)
T KOG1242|consen 405 DPKDLAPFLPSLLPG-LKENLDDAVPEVRAVAARAL 439 (569)
T ss_pred CHHHHhhhHHHHhhH-HHHHhcCCChhHHHHHHHHH
Confidence 443333345555543 34566788899987654433
No 73
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=84.59 E-value=4.9 Score=37.85 Aligned_cols=77 Identities=22% Similarity=0.103 Sum_probs=59.0
Q ss_pred HHHhhcCCCChhHHHHHHHHHHHHhhc-C-chhhHhhHHHHHHHHhcCCChhHHHHHHHHHHHhC---CCCccchHHHHH
Q 001839 16 AVGKCARDPSVFVRKCAANALPKLHEL-R-QEEITSAIEEIVGILLNDRSPGVVGAAAAAFASIC---PNNFTLIGRNYR 90 (1007)
Q Consensus 16 aIkk~~~D~SPYVRKtAA~AI~Kly~l-d-pe~~~~~LieiL~~LL~D~~p~VvgsAv~Af~EIc---P~rldLihk~yr 90 (1007)
-+.+-+.|+-|-||--|..-+.|+..- + +-...+.+..++...|+|.++.|--||+.+|..+| |++ ...
T Consensus 7 ~al~~L~dp~~PvRa~gL~~L~~Li~~~~~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~~------vl~ 80 (92)
T PF10363_consen 7 EALSDLNDPLPPVRAHGLVLLRKLIESKSEPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPDE------VLP 80 (92)
T ss_pred HHHHHccCCCcchHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChHH------HHH
Confidence 344567899999999999999998865 4 32366788888889999999999999999998876 432 445
Q ss_pred HHHHhCCC
Q 001839 91 NLCQILPD 98 (1007)
Q Consensus 91 kLc~~L~d 98 (1007)
.||..-.+
T Consensus 81 ~L~~~y~~ 88 (92)
T PF10363_consen 81 ILLDEYAD 88 (92)
T ss_pred HHHHHHhC
Confidence 56654444
No 74
>PF02854 MIF4G: MIF4G domain; InterPro: IPR003890 This entry represents an MIF4G-like domain. MIF4G domains share a common structure but can differ in sequence. This entry is designated "type 3", and is found in nuclear cap-binding proteins, eIF4G, and UPF2. The MIF4G domain is a structural motif with an ARM (Armadillo) repeat-type fold, consisting of a 2-layer alpha/alpha right-handed superhelix. Proteins usually contain two or more structurally similar MIF4G domains connected by unstructured linkers. MIF4G domains are found in several proteins involved in RNA metabolism, including eIF4G (eukaryotic initiation factor 4-gamma), eIF-2b (translation initiation factor), UPF2 (regulator of nonsense transcripts 2), and nuclear cap-binding proteins (CBP80, CBC1, NCBP1), although the sequence identity between them may be low []. The nuclear cap-binding complex (CBC) is a heterodimer. Human CBC consists of a large CBP80 subunit and a small CBP20 subunit, the latter being critical for cap binding. CBP80 contains three MIF4G domains connected with long linkers, while CBP20 has an RNP (ribonucleoprotein)-type domain that associates with domains 2 and 3 of CBP80 []. The complex binds to 5'-cap of eukaryotic RNA polymerase II transcripts, such as mRNA and U snRNA. The binding is important for several mRNA nuclear maturation steps and for nonsense-mediated decay. It is also essential for nuclear export of U snRNAs in metazoans []. Eukaryotic translation initiation factor 4 gamma (eIF4G) plays a critical role in protein expression, and is at the centre of a complex regulatory network. Together with the cap-binding protein eIF4E, it recruits the small ribosomal subunit to the 5'-end of mRNA and promotes the assembly of a functional translation initiation complex, which scans along the mRNA to the translation start codon. The activity of eIF4G in translation initiation could be regulated through intra- and inter-protein interactions involving the ARM repeats []. In eIF4G, the MIF4G domain binds eIF4A, eIF3, RNA and DNA. Nonsense-mediated mRNA decay (NMD) in eukaryotes involves UPF1, UPF2 and UPF3 to accelerate the decay rate of two unique classes of transcripts: (1) nonsense mRNAs that arise through errors in gene expression, and (2) naturally occurring transcripts that lack coding errors but have built-in features that target them for accelerated decay (error-free mRNAs). NMD can trigger decay during any round of translation and can target CBC-bound or eIF-4E-bound transcripts []. UPF2 contains MIF4G domains, while UPF3 contains an RNP domain []. ; GO: 0005515 protein binding, 0016070 RNA metabolic process; PDB: 3FEY_A 3FEX_A 1H6K_C 1H2V_C 1H2U_A 1H2T_C 1N54_A 1N52_A 1HU3_A 3RK6_A ....
Probab=84.44 E-value=26 Score=35.98 Aligned_cols=172 Identities=16% Similarity=0.108 Sum_probs=92.7
Q ss_pred HHHHHHhccCCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhccccccCCCCCccc
Q 001839 298 KLEILSSIVTESSISSVFKEFQDYIRDPDRRFAADTVAAIGLCARKLPKMANTCVEGLLALIRQELLTSDIESGNGEADV 377 (1007)
Q Consensus 298 KLeIL~~Lane~Ni~~IL~EL~~Yv~d~D~~fv~~aI~AIG~~A~k~p~~a~~cl~~Ll~LLs~~~~~s~~~~~~~~~~v 377 (1007)
|+.-+.+=.++.|+..++++|..+..+.+.+.....++.|-.+|..-|..+..+...+-. |.... ...+
T Consensus 3 ~v~~~lnklt~~n~~~~~~~l~~~~~~~~~~~~~~i~~~i~~~a~~~~~~~~~~a~l~~~-l~~~~----------~~~f 71 (209)
T PF02854_consen 3 KVRGILNKLTPSNFESIIDELIKLNWSDDPETLKEIVKLIFEKAVEEPNFSPLYARLCAA-LNSRF----------PSEF 71 (209)
T ss_dssp HHHHHHHHCSSTTHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSGGGHHHHHHHHHH-HHHHC----------HHHH
T ss_pred hHHHHHHHCCHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhhhhhcCchHHHHHHHHHHH-Hhccc----------hhhH
Confidence 444444444599999999999998877788899999999999999999888766554443 33210 0012
Q ss_pred hhhHHHHHHHHHHcCCchHHHHHHhhhccCchhhHHhhhhhccccccCCCCccccHHHHHHHHHHhhcc--------CcH
Q 001839 378 LIQSIISIKSIIKQDPSCHEKLFRSLDSIKVPEARVMIIWMVGEYSSVGVKIPRMLTTVLKYLAWCFKS--------EAV 449 (1007)
Q Consensus 378 V~EsVvvIk~Llq~~P~~~~~L~~~ld~I~~p~ArAsIIWLLGEY~~~~e~ip~ia~DvLR~l~k~F~~--------E~~ 449 (1007)
....+..+..-++... ....+-. . .-..-.-+.+.+.++||-....-.-+.++-++++.+...... +..
T Consensus 72 ~~~ll~~~~~~f~~~~-~~~~~~~-~-~~~~~~~~~~~~~fl~eL~~~~vv~~~~i~~~l~~ll~~~~~~~~~~~~~~~i 148 (209)
T PF02854_consen 72 RSLLLNRCQEEFEERY-SNEELEE-N-RQSSKQRRRGNIRFLAELFNFGVVSEKIIFDILRELLSDGTDECQPPPDEENI 148 (209)
T ss_dssp HHHHHHHHHHHHHHHT--HHHHHH-H-HHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHTSHHCCHHTCHHHH
T ss_pred HHHHHHHHHHHHHHhh-hhhhHHH-H-HHHHHHHHhhhhhHHHhhHhhccccchhHHHHHHHHHhcccccccCCCcHhHH
Confidence 2222222222222210 0000000 0 001112244567788874332112234567788888877665 334
Q ss_pred HHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHH
Q 001839 450 ETKLQILNTTIKVLLCAKGGDMWTITRLFSYLLEL 484 (1007)
Q Consensus 450 ~VKlqILtlaaKL~~~~p~e~~~~i~~L~qyvLeL 484 (1007)
+.=..+|..+.+.+-..+ .....+..++.++-..
T Consensus 149 e~~~~lL~~~G~~l~~~~-~~~~~l~~~~~~~~~~ 182 (209)
T PF02854_consen 149 ECLCTLLKTCGKKLENSE-ESPKALDEIFERLQKY 182 (209)
T ss_dssp HHHHHHHHHHHHHHHHCH-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCC-CchhHHHHHHHHHHHH
Confidence 455566777777665222 1122344555544443
No 75
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.29 E-value=65 Score=40.52 Aligned_cols=73 Identities=22% Similarity=0.281 Sum_probs=50.9
Q ss_pred HHHHHHhhcccccCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcCCCCchh----hHHHHHHHHHHHCCCcccc
Q 001839 206 VKLLLQCTSPLLWSHNSAVVLAAAGVHWIMSPKEDVKRIVKPLLFILRSSGASKY----VVLCNIQVFAKALPHLFVP 279 (1007)
Q Consensus 206 ~~lLL~~~~pLLqS~NsAVVlaaa~l~~~lap~~~l~~~~~pLv~LL~S~~eiqy----vvL~~I~~i~~~~p~lF~~ 279 (1007)
.++.++.++.=|.|+|+.-|+=|.++.-.++..+-.+....-+-.||.|....-| .+|+-+ .|-++.|+++.+
T Consensus 109 ~klvin~iknDL~srn~~fv~LAL~~I~niG~re~~ea~~~DI~KlLvS~~~~~~vkqkaALclL-~L~r~spDl~~~ 185 (938)
T KOG1077|consen 109 MKLVINSIKNDLSSRNPTFVCLALHCIANIGSREMAEAFADDIPKLLVSGSSMDYVKQKAALCLL-RLFRKSPDLVNP 185 (938)
T ss_pred HHHHHHHHHhhhhcCCcHHHHHHHHHHHhhccHhHHHHhhhhhHHHHhCCcchHHHHHHHHHHHH-HHHhcCccccCh
Confidence 3788999999999999998888888877777766555555556678876544433 445433 344567777665
No 76
>PF02883 Alpha_adaptinC2: Adaptin C-terminal domain; InterPro: IPR008152 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. AP (adaptor protein) complexes are found in coated vesicles and clathrin-coated pits. AP complexes connect cargo proteins and lipids to clathrin at vesicle budding sites, as well as binding accessory proteins that regulate coat assembly and disassembly (such as AP180, epsins and auxilin). There are different AP complexes in mammals. AP1 is responsible for the transport of lysosomal hydrolases between the TGN and endosomes []. AP2 associates with the plasma membrane and is responsible for endocytosis []. AP3 is responsible for protein trafficking to lysosomes and other related organelles []. AP4 is less well characterised. AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). For example, in AP1 these subunits are gamma-1-adaptin, beta-1-adaptin, mu-1 and sigma-1, while in AP2 they are alpha-adaptin, beta-2-adaptin, mu-2 and sigma-2. Each subunit has a specific function. Adaptins recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal ear (appendage) domains. Mu recognises tyrosine-based sorting signals within the cytoplasmic domains of transmembrane cargo proteins []. One function of clathrin and AP2 complex-mediated endocytosis is to regulate the number of GABA(A) receptors available at the cell surface []. GGAs (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) are a family of monomeric clathrin adaptor proteins that are conserved from yeasts to humans. GGAs regulate clathrin-mediated the transport of proteins (such as mannose 6-phosphate receptors) from the TGN to endosomes and lysosomes through interactions with TGN-sorting receptors, sometimes in conjunction with AP-1 [, ]. GGAs bind cargo, membranes, clathrin and accessory factors. GGA1, GGA2 and GGA3 all contain a domain homologous to the ear domain of gamma-adaptin. GGAs are composed of a single polypeptide with four domains: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The VHS domain is responsible for endocytosis and signal transduction, recognising transmembrane cargo through the ACLL sequence in the cytoplasmic domains of sorting receptors []. The GAT domain (also found in Tom1 proteins) interacts with ARF (ADP-ribosylation factor) to regulate membrane trafficking [], and with ubiquitin for receptor sorting []. The hinge region contains a clathrin box for recognition and binding to clathrin, similar to that found in AP adaptins. The GAE domain is similar to the AP gamma-adaptin ear domain, and is responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. This entry represents a beta-sandwich structural motif found in the appendage (ear) domain of alpha-, beta- and gamma-adaptin from AP clathrin adaptor complexes, and the GAE (gamma-adaptin ear) domain of GGA adaptor proteins. These domains have an immunoglobulin-like beta-sandwich fold containing 7 or 8 strands in 2 beta-sheets in a Greek key topology [, ]. Although these domains share a similar fold, there is little sequence identity between the alpha/beta-adaptins and gamma-adaptin/GAE. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030131 clathrin adaptor complex; PDB: 3MNM_B 3ZY7_B 1GYU_A 1GYW_B 2A7B_A 1GYV_A 2E9G_A 1E42_B 2G30_A 2IV9_B ....
Probab=84.09 E-value=3.7 Score=39.41 Aligned_cols=86 Identities=21% Similarity=0.339 Sum_probs=55.0
Q ss_pred CCCeeEEEEecCCCCCCCCCeEEEEEEEEeCCCCceeeeEeeccccchhhhhhhhhhhccccccccCCCCCCcccCCccc
Q 001839 735 GNGLKVYYSFSSEASTISPQLVCLETFFENCSSETMSEVTLVDEESHKALDLADLTLATTASSLTSQSDLPTLVPMEEIT 814 (1007)
Q Consensus 735 g~GL~v~Y~F~r~p~~~s~~mv~v~l~f~N~s~~~i~~i~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~f~~i~ 814 (1007)
-+||.|.|++.+ .-.+....|.++|.|.+..+|+++++-=- .|.++... +.+- .-.
T Consensus 8 ~~~l~I~~~~~~---~~~~~~~~i~~~f~N~s~~~it~f~~q~a----vpk~~~l~----------------l~~~-s~~ 63 (115)
T PF02883_consen 8 DNGLQIGFKSEK---SPNPNQGRIKLTFGNKSSQPITNFSFQAA----VPKSFKLQ----------------LQPP-SSS 63 (115)
T ss_dssp ETTEEEEEEEEE---CCETTEEEEEEEEEE-SSS-BEEEEEEEE----EBTTSEEE----------------EEES-S-S
T ss_pred CCCEEEEEEEEe---cCCCCEEEEEEEEEECCCCCcceEEEEEE----eccccEEE----------------EeCC-CCC
Confidence 468999999988 33478999999999999999999998642 23443322 2221 123
Q ss_pred ccCCCCeeEEEEEEEcCC------CCccceEEEEEc
Q 001839 815 SLEPGQTMKRILEVRFHH------HLLPLKLALHCN 844 (1007)
Q Consensus 815 ~l~p~~~~~~~~~idF~~------~~~~~~~~l~~~ 844 (1007)
.|+||+.++-.|-|.=.. .....+|.|..+
T Consensus 64 ~i~p~~~i~Q~~~v~~~~~~~~~~~~l~~~~~vsy~ 99 (115)
T PF02883_consen 64 TIPPGQQITQVIKVENSPFSEPTPKPLKPRLRVSYN 99 (115)
T ss_dssp SB-TTTEEEEEEEEEESS-BSTTSSTTEEEEEEEEE
T ss_pred eeCCCCeEEEEEEEEEeecccCCCCCcCeEEEEEEE
Confidence 688898888877776411 222566666553
No 77
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=84.00 E-value=2.8 Score=39.84 Aligned_cols=78 Identities=18% Similarity=0.155 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHHhhcCch---hhHhhHHHHHHHHhcCCChhHHHHHHHHHHHhCC---CC-ccchHHHHHHHHHhCCCCC
Q 001839 28 VRKCAANALPKLHELRQE---EITSAIEEIVGILLNDRSPGVVGAAAAAFASICP---NN-FTLIGRNYRNLCQILPDVE 100 (1007)
Q Consensus 28 VRKtAA~AI~Kly~ldpe---~~~~~LieiL~~LL~D~~p~VvgsAv~Af~EIcP---~r-ldLihk~yrkLc~~L~d~d 100 (1007)
.||.+.+|+..+----+. ...+.|++.+-.++.|.++-|--.|.-+|.+|+- +. +.-++..|..||+++.|.|
T Consensus 2 ~R~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d 81 (97)
T PF12755_consen 2 YRKGGLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADPD 81 (97)
T ss_pred chhHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 488888998887543221 2556677777788899999999999999998863 22 3445678999999999998
Q ss_pred hhhHH
Q 001839 101 EWGQI 105 (1007)
Q Consensus 101 EWgQv 105 (1007)
+=-|.
T Consensus 82 ~~Vr~ 86 (97)
T PF12755_consen 82 ENVRS 86 (97)
T ss_pred hhHHH
Confidence 86544
No 78
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.67 E-value=39 Score=41.40 Aligned_cols=252 Identities=14% Similarity=0.143 Sum_probs=156.0
Q ss_pred hHHHHHHHHhhcCCCChhHHHHHHHHHHHHhh---cCchh-hHhhHHHHHHHHhcCCChhHHHHHHHHHHHhCC---CC-
Q 001839 10 SPLVLVAVGKCARDPSVFVRKCAANALPKLHE---LRQEE-ITSAIEEIVGILLNDRSPGVVGAAAAAFASICP---NN- 81 (1007)
Q Consensus 10 ~piv~~aIkk~~~D~SPYVRKtAA~AI~Kly~---ldpe~-~~~~LieiL~~LL~D~~p~VvgsAv~Af~EIcP---~r- 81 (1007)
.|-++..+-+.+.|.++-||.-+=.++..+-+ -+|+. +.++.++++..-+..++|....-|+.=+.|+.+ +.
T Consensus 206 l~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~s~P~s~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~ 285 (675)
T KOG0212|consen 206 LPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIRSSPSSMDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDL 285 (675)
T ss_pred chHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCccccCcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcch
Confidence 35566677799999999999887777766443 36754 677778877777888899998888888888763 22
Q ss_pred ccchHHHHHHHHHhCCCCCh-----hhHHHHHHHHHHhhhhcccccchhhhhhhhhcccCCCcccccccccccccCCCCC
Q 001839 82 FTLIGRNYRNLCQILPDVEE-----WGQILLIEILLRYVVASHGLVKESIMSSLLCIESSHSEKDVFDVNVALEDNGIPS 156 (1007)
Q Consensus 82 ldLihk~yrkLc~~L~d~dE-----WgQv~iL~lL~rY~r~~~~~~kp~~~f~~~~~~~~~~~~~~~~~~~~l~~q~~~~ 156 (1007)
+-.+.+..-.++..+.+-++ ..|.+-..++.+..-.+
T Consensus 286 l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~~~-------------------------------------- 327 (675)
T KOG0212|consen 286 LLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSSER-------------------------------------- 327 (675)
T ss_pred hhhhhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHHhhhh--------------------------------------
Confidence 23345566677777776666 34443333443332100
Q ss_pred CccchhhhhhhccccccccccccccCCCcccccccccCccccCCCCChhHHHHHHhhcccccCCChHHHHHHHHHHHhc-
Q 001839 157 RTYDSELVNLVSRSYIEGLGEYLTRSSDTNARSSDLNGARFTSGKTNDDVKLLLQCTSPLLWSHNSAVVLAAAGVHWIM- 235 (1007)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~de~~~~~~~~~~~~~~~~~~~~~~~~~D~D~~lLL~~~~pLLqS~NsAVVlaaa~l~~~l- 235 (1007)
. .-+-|.+-+++.+..+|.+.+-..-++|..-+.++
T Consensus 328 --------------------------------------~-----~~~id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~ 364 (675)
T KOG0212|consen 328 --------------------------------------L-----KEEIDYGSIIEVLTKYLSDDREETRIAVLNWIILLY 364 (675)
T ss_pred --------------------------------------h-----ccccchHHHHHHHHHHhhcchHHHHHHHHHHHHHHH
Confidence 0 00135677888888888888887777776654444
Q ss_pred --CCHHHH---HHHHHHHHHhhc-CCCCchhhHHHHHHHHHHHCCCccccccceeee-----ccCCCHHHHHHHHHHHHh
Q 001839 236 --SPKEDV---KRIVKPLLFILR-SSGASKYVVLCNIQVFAKALPHLFVPHYEDFFV-----SSSDSYQSKALKLEILSS 304 (1007)
Q Consensus 236 --ap~~~l---~~~~~pLv~LL~-S~~eiqyvvL~~I~~i~~~~p~lF~~~l~~Ffv-----~~~Dp~~IK~lKLeIL~~ 304 (1007)
+|.+.+ ..+...|+.-|+ ++.++-..+|..++.|+...... |+..|.. ...|+...+..--=|+..
T Consensus 365 ~~~p~ql~~h~~~if~tLL~tLsd~sd~vvl~~L~lla~i~~s~~~~---~~~~fl~sLL~~f~e~~~~l~~Rg~lIIRq 441 (675)
T KOG0212|consen 365 HKAPGQLLVHNDSIFLTLLKTLSDRSDEVVLLALSLLASICSSSNSP---NLRKFLLSLLEMFKEDTKLLEVRGNLIIRQ 441 (675)
T ss_pred hhCcchhhhhccHHHHHHHHhhcCchhHHHHHHHHHHHHHhcCcccc---cHHHHHHHHHHHHhhhhHHHHhhhhHHHHH
Confidence 443332 233334443333 35677777777777777543221 3333321 235677677666667777
Q ss_pred ccCCCCHHHHHHHHHHhh-ccCChhHHHHHHHHHHHHHHhCc
Q 001839 305 IVTESSISSVFKEFQDYI-RDPDRRFAADTVAAIGLCARKLP 345 (1007)
Q Consensus 305 Lane~Ni~~IL~EL~~Yv-~d~D~~fv~~aI~AIG~~A~k~p 345 (1007)
||.==|.+.|.+.+-.-+ +..|-+|+...|+++..+-...|
T Consensus 442 lC~lL~aE~IYr~~a~ILe~e~nl~FAstMV~~Ln~iLlTSt 483 (675)
T KOG0212|consen 442 LCLLLNAERIYRSIADILEREENLKFASTMVQALNTILLTST 483 (675)
T ss_pred HHHHhCHHHHHHHHHHHHhccccchHHHHHHHHHHhhhcccH
Confidence 776667777777766655 44566788888888865443333
No 79
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=82.59 E-value=12 Score=47.62 Aligned_cols=257 Identities=16% Similarity=0.104 Sum_probs=142.4
Q ss_pred hhhhHHHHHHHHhhcCCCChhHHHHHHHHHHHHhhcCchh-hHhhHHHHHHHHhcCCChhHHHHHHH--HHHHhCCCCcc
Q 001839 7 HVISPLVLVAVGKCARDPSVFVRKCAANALPKLHELRQEE-ITSAIEEIVGILLNDRSPGVVGAAAA--AFASICPNNFT 83 (1007)
Q Consensus 7 p~I~piv~~aIkk~~~D~SPYVRKtAA~AI~Kly~ldpe~-~~~~LieiL~~LL~D~~p~VvgsAv~--Af~EIcP~rld 83 (1007)
..+..-+++.++.++.|.++.||...|+-+.=+--+-|.+ ..+.+.++.-.+|+|-+|.|..+-+- ...+.+++...
T Consensus 393 ~i~~~~ilp~~~~lv~d~~~~vr~a~a~~~~~~~p~~~k~~ti~~llp~~~~~l~de~~~V~lnli~~ls~~~~v~~v~g 472 (759)
T KOG0211|consen 393 NIPDSSILPEVQVLVLDNALHVRSALASVITGLSPILPKERTISELLPLLIGNLKDEDPIVRLNLIDKLSLLEEVNDVIG 472 (759)
T ss_pred ccchhhhhHHHHHHHhcccchHHHHHhccccccCccCCcCcCccccChhhhhhcchhhHHHHHhhHHHHHHHHhccCccc
Confidence 3344445789999999999999999999887654444422 33456666667899999999988873 33344444321
Q ss_pred chHHHHHHHHHhCCCCChhhHHHHHHHHHHhhhhcc-cccchhhhhhhhhcccCCCcccccccccccccCCCCCCccchh
Q 001839 84 LIGRNYRNLCQILPDVEEWGQILLIEILLRYVVASH-GLVKESIMSSLLCIESSHSEKDVFDVNVALEDNGIPSRTYDSE 162 (1007)
Q Consensus 84 Lihk~yrkLc~~L~d~dEWgQv~iL~lL~rY~r~~~-~~~kp~~~f~~~~~~~~~~~~~~~~~~~~l~~q~~~~~~~~~~ 162 (1007)
+--.-..++..|.++.||..-.+-.-+..|.+.-. |+- ..+|
T Consensus 473 -~~~~s~slLp~i~el~~d~~wRvr~ail~~ip~la~q~~--~~~~---------------------------------- 515 (759)
T KOG0211|consen 473 -ISTVSNSLLPAIVELAEDLLWRVRLAILEYIPQLALQLG--VEFF---------------------------------- 515 (759)
T ss_pred -chhhhhhhhhhhhhhccchhHHHHHHHHHHHHHHHHhhh--hHHh----------------------------------
Confidence 11133467777888888876666666666654310 000 0000
Q ss_pred hhhhhccccccccccccccCCCcccccccccCccccCCCCChhHHHHHHhhcccccCCChHHHHHHH----HHHHhcCCH
Q 001839 163 LVNLVSRSYIEGLGEYLTRSSDTNARSSDLNGARFTSGKTNDDVKLLLQCTSPLLWSHNSAVVLAAA----GVHWIMSPK 238 (1007)
Q Consensus 163 ~~~~~~~~~~~~~de~~~~~~~~~~~~~~~~~~~~~~~~~D~D~~lLL~~~~pLLqS~NsAVVlaaa----~l~~~lap~ 238 (1007)
|+-..-++ ...|...=.++==+|+ .+.+.++..
T Consensus 516 ----------------------------------------~~~~~~l~---~~~l~d~v~~Ir~~aa~~l~~l~~~~G~~ 552 (759)
T KOG0211|consen 516 ----------------------------------------DEKLAELL---RTWLPDHVYSIREAAARNLPALVETFGSE 552 (759)
T ss_pred ----------------------------------------hHHHHHHH---HhhhhhhHHHHHHHHHHHhHHHHHHhCcc
Confidence 00000000 0111111112222222 223333322
Q ss_pred HHHHHHHHHH-HHhhcCCCCchhhHHHHHHHHHHHCC-Cccccccceee-eccCCCH-HHHHHHHHHHHhccC---CCCH
Q 001839 239 EDVKRIVKPL-LFILRSSGASKYVVLCNIQVFAKALP-HLFVPHYEDFF-VSSSDSY-QSKALKLEILSSIVT---ESSI 311 (1007)
Q Consensus 239 ~~l~~~~~pL-v~LL~S~~eiqyvvL~~I~~i~~~~p-~lF~~~l~~Ff-v~~~Dp~-~IK~lKLeIL~~Lan---e~Ni 311 (1007)
-....++.-+ ...+..+--.|...|..|..|+.... .+|..++--++ -...||. -||...+..|..+.. ..-.
T Consensus 553 w~~~~~i~k~L~~~~q~~y~~R~t~l~si~~la~v~g~ei~~~~Llp~~~~l~~D~vanVR~nvak~L~~i~~~L~~~~~ 632 (759)
T KOG0211|consen 553 WARLEEIPKLLAMDLQDNYLVRMTTLFSIHELAEVLGQEITCEDLLPVFLDLVKDPVANVRINVAKHLPKILKLLDESVR 632 (759)
T ss_pred hhHHHhhHHHHHHhcCcccchhhHHHHHHHHHHHHhccHHHHHHHhHHHHHhccCCchhhhhhHHHHHHHHHhhcchHHH
Confidence 2233333333 33333334567788888888887654 46666654333 3457774 787777776665542 3333
Q ss_pred HHHHHHHHHhh-ccCChhHHHHHHHHHHHHHHh
Q 001839 312 SSVFKEFQDYI-RDPDRRFAADTVAAIGLCARK 343 (1007)
Q Consensus 312 ~~IL~EL~~Yv-~d~D~~fv~~aI~AIG~~A~k 343 (1007)
..-+..++..+ .+.|.+..-.|+.|.|.++..
T Consensus 633 ~~~v~pll~~L~~d~~~dvr~~a~~a~~~i~l~ 665 (759)
T KOG0211|consen 633 DEEVLPLLETLSSDQELDVRYRAILAFGSIELS 665 (759)
T ss_pred HHHHHHHHHHhccCcccchhHHHHHHHHHHHHH
Confidence 44444444433 577778888888888877654
No 80
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=81.04 E-value=45 Score=44.86 Aligned_cols=180 Identities=14% Similarity=0.147 Sum_probs=99.8
Q ss_pred CccccccceeeeccCCCH-HHHHHHHHHHHhccCCC-CH-----HHHHHHHHHhhccCChhHHHHHHHHHHHHHHhCccc
Q 001839 275 HLFVPHYEDFFVSSSDSY-QSKALKLEILSSIVTES-SI-----SSVFKEFQDYIRDPDRRFAADTVAAIGLCARKLPKM 347 (1007)
Q Consensus 275 ~lF~~~l~~Ffv~~~Dp~-~IK~lKLeIL~~Lane~-Ni-----~~IL~EL~~Yv~d~D~~fv~~aI~AIG~~A~k~p~~ 347 (1007)
++|..+++.||-...++. ..-.-=++|+..|.++. |+ ..|+..|..+-++...+--.-|-.-|-+||.++...
T Consensus 140 e~~~~~f~~f~d~~~~~~~~~v~~~~~i~~~li~e~d~v~~e~L~~ll~~lv~~~~~~~~~a~~la~~li~~~a~~~~~~ 219 (1266)
T KOG1525|consen 140 ELVHELFRTFFDLARKGHPKKVFNMLDIAIMLITEEDTVQSELLDVLLENLVKPGRDTIKEADKLASDLIERCADNLEDT 219 (1266)
T ss_pred HHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHhhhhhchh
Confidence 577778888887665653 22222677777766654 44 357777777766666655555666777889888765
Q ss_pred HHHHHHHHHHHHHhhhccccccCCCCCccchhhHHHHHHHHHHcCCchHHH-HHHhhhccC--chhhHHhhh----hhcc
Q 001839 348 ANTCVEGLLALIRQELLTSDIESGNGEADVLIQSIISIKSIIKQDPSCHEK-LFRSLDSIK--VPEARVMII----WMVG 420 (1007)
Q Consensus 348 a~~cl~~Ll~LLs~~~~~s~~~~~~~~~~vV~EsVvvIk~Llq~~P~~~~~-L~~~ld~I~--~p~ArAsII----WLLG 420 (1007)
....+..-+..=.. ....+..-...+|..|.+-.|..... +-++...+. +..-|-..+ -+++
T Consensus 220 i~~f~~~~~~~~~s-----------~~~~~~~~~he~i~~L~~~~p~ll~~vip~l~~eL~se~~~~Rl~a~~lvg~~~~ 288 (1266)
T KOG1525|consen 220 IANFLNSCLTEYKS-----------RQSSLKIKYHELILELWRIAPQLLLAVIPQLEFELLSEQEEVRLKAVKLVGRMFS 288 (1266)
T ss_pred HHHHHHHHHhhccc-----------cccchhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHh
Confidence 54443333321110 00011112223444555555543322 111111111 112233333 3334
Q ss_pred ccccCCCCccccHHHHHHHHHHhhccCcHHHHHHHHHHHHHHhhhcCC
Q 001839 421 EYSSVGVKIPRMLTTVLKYLAWCFKSEAVETKLQILNTTIKVLLCAKG 468 (1007)
Q Consensus 421 EY~~~~e~ip~ia~DvLR~l~k~F~~E~~~VKlqILtlaaKL~~~~p~ 468 (1007)
++..... .--++++..+.++|.+-+.+||...+-.+--.++.+|.
T Consensus 289 ~~~~~l~---~~~~~~~~~fl~r~~D~~~~vR~~~v~~~~~~l~~~~~ 333 (1266)
T KOG1525|consen 289 DKDSQLS---ETYDDLWSAFLGRFNDISVEVRMECVESIKQCLLNNPS 333 (1266)
T ss_pred cchhhhc---ccchHHHHHHHHHhccCChhhhhhHHHHhHHHHhcCch
Confidence 4433211 11367788888899999999999999999888888875
No 81
>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known. It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A.
Probab=80.57 E-value=2.5 Score=38.02 Aligned_cols=61 Identities=16% Similarity=0.221 Sum_probs=34.4
Q ss_pred eEEEEEEEEeCCCCceeeeEeeccccchhhhhhhhhhhccccccccCCCCCCcccCCcccccCCCCeeEEEEEEEcCCCC
Q 001839 755 LVCLETFFENCSSETMSEVTLVDEESHKALDLADLTLATTASSLTSQSDLPTLVPMEEITSLEPGQTMKRILEVRFHHHL 834 (1007)
Q Consensus 755 mv~v~l~f~N~s~~~i~~i~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~f~~i~~l~p~~~~~~~~~idF~~~~ 834 (1007)
=+.+.++++|.++.++.++.+.-. +|+|-.... .-..+..|+||++++..+-|.=-...
T Consensus 6 ~~~~~~tv~N~g~~~~~~v~~~l~----~P~GW~~~~-----------------~~~~~~~l~pG~s~~~~~~V~vp~~a 64 (78)
T PF10633_consen 6 TVTVTLTVTNTGTAPLTNVSLSLS----LPEGWTVSA-----------------SPASVPSLPPGESVTVTFTVTVPADA 64 (78)
T ss_dssp EEEEEEEEE--SSS-BSS-EEEEE------TTSE--------------------EEEEE--B-TTSEEEEEEEEEE-TT-
T ss_pred EEEEEEEEEECCCCceeeEEEEEe----CCCCccccC-----------------CccccccCCCCCEEEEEEEEECCCCC
Confidence 367899999999999999999753 688853110 01255699999999988877655544
Q ss_pred cc
Q 001839 835 LP 836 (1007)
Q Consensus 835 ~~ 836 (1007)
.+
T Consensus 65 ~~ 66 (78)
T PF10633_consen 65 AP 66 (78)
T ss_dssp -S
T ss_pred CC
Confidence 43
No 82
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.34 E-value=29 Score=43.67 Aligned_cols=198 Identities=16% Similarity=0.237 Sum_probs=119.7
Q ss_pred HHHHHHHHHHHHhhcC-CCCchhhHHHHHHHHHHHCCCccccccceeeeccCCC-HHHHHHHHHHHHhccCCCCHHHHHH
Q 001839 239 EDVKRIVKPLLFILRS-SGASKYVVLCNIQVFAKALPHLFVPHYEDFFVSSSDS-YQSKALKLEILSSIVTESSISSVFK 316 (1007)
Q Consensus 239 ~~l~~~~~pLv~LL~S-~~eiqyvvL~~I~~i~~~~p~lF~~~l~~Ffv~~~Dp-~~IK~lKLeIL~~Lane~Ni~~IL~ 316 (1007)
.++..+.+.++..+.. +-+.+-++.-.+...+...|.+-.-.+..|..-+.|+ .-||.+++..+..+.-+.=+..+.+
T Consensus 45 ~DvSslF~dvvk~~~T~dlelKKlvyLYl~nYa~~~P~~a~~avnt~~kD~~d~np~iR~lAlrtm~~l~v~~i~ey~~~ 124 (734)
T KOG1061|consen 45 KDVSSLFPDVVKCMQTRDLELKKLVYLYLMNYAKGKPDLAILAVNTFLKDCEDPNPLIRALALRTMGCLRVDKITEYLCD 124 (734)
T ss_pred cchHhhhHHHHhhcccCCchHHHHHHHHHHHhhccCchHHHhhhhhhhccCCCCCHHHHHHHhhceeeEeehHHHHHHHH
Confidence 4556666666666643 3455544444455555666654444444444444565 5799999999999988888889999
Q ss_pred HHHHhhccCChhHHHHHHHHHHHHHHhCccc--HHHHHHHHHHHHHhhhccccccCCCCCccchhhHHHHHHHHHHcCCc
Q 001839 317 EFQDYIRDPDRRFAADTVAAIGLCARKLPKM--ANTCVEGLLALIRQELLTSDIESGNGEADVLIQSIISIKSIIKQDPS 394 (1007)
Q Consensus 317 EL~~Yv~d~D~~fv~~aI~AIG~~A~k~p~~--a~~cl~~Ll~LLs~~~~~s~~~~~~~~~~vV~EsVvvIk~Llq~~P~ 394 (1007)
.|....++.+....+.+...+.++-..-+.. ....++.|-.|+. +.+..||+-++-.+..|....|+
T Consensus 125 Pl~~~l~d~~~yvRktaa~~vakl~~~~~~~~~~~gl~~~L~~ll~-----------D~~p~VVAnAlaaL~eI~e~~~~ 193 (734)
T KOG1061|consen 125 PLLKCLKDDDPYVRKTAAVCVAKLFDIDPDLVEDSGLVDALKDLLS-----------DSNPMVVANALAALSEIHESHPS 193 (734)
T ss_pred HHHHhccCCChhHHHHHHHHHHHhhcCChhhccccchhHHHHHHhc-----------CCCchHHHHHHHHHHHHHHhCCC
Confidence 9999999888765555554444433222221 1244566666665 23456888899899999888875
Q ss_pred hH------H---HHHHhhhccCchhhHHhhhhhccccccCCCCccccHHHHHHHHHHhhccCcHHH
Q 001839 395 CH------E---KLFRSLDSIKVPEARVMIIWMVGEYSSVGVKIPRMLTTVLKYLAWCFKSEAVET 451 (1007)
Q Consensus 395 ~~------~---~L~~~ld~I~~p~ArAsIIWLLGEY~~~~e~ip~ia~DvLR~l~k~F~~E~~~V 451 (1007)
.. . ++...+..++ .=+++.|+=.+-+|--. -+.=+.++++.+...+..-...|
T Consensus 194 ~~~~~l~~~~~~~lL~al~ec~-EW~qi~IL~~l~~y~p~---d~~ea~~i~~r~~p~Lqh~n~av 255 (734)
T KOG1061|consen 194 VNLLELNPQLINKLLEALNECT-EWGQIFILDCLAEYVPK---DSREAEDICERLTPRLQHANSAV 255 (734)
T ss_pred CCcccccHHHHHHHHHHHHHhh-hhhHHHHHHHHHhcCCC---CchhHHHHHHHhhhhhccCCcce
Confidence 21 1 1333344433 33455666666677532 11225667777666655544444
No 83
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=80.06 E-value=1.7 Score=35.03 Aligned_cols=25 Identities=28% Similarity=0.179 Sum_probs=22.3
Q ss_pred HHHHHHHHhhcCCCChhHHHHHHHH
Q 001839 11 PLVLVAVGKCARDPSVFVRKCAANA 35 (1007)
Q Consensus 11 piv~~aIkk~~~D~SPYVRKtAA~A 35 (1007)
+.+..+|.+.+.|.+|-||++|.-.
T Consensus 17 ~~v~~~i~~rl~D~s~~VR~aav~l 41 (42)
T PF12765_consen 17 SDVQSAIIRRLSDSSPSVREAAVDL 41 (42)
T ss_pred HHHHHHHHHHhcCCChHHHHHHHHH
Confidence 5788999999999999999998754
No 84
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=79.97 E-value=1.7e+02 Score=36.75 Aligned_cols=69 Identities=14% Similarity=0.050 Sum_probs=56.7
Q ss_pred hHhhHHHHHHHHhcCCChhHHHHHHHHHHHhCCCCccchHHHHHHHHHhCCCCChhhHHHHHHHHHHhhh
Q 001839 47 ITSAIEEIVGILLNDRSPGVVGAAAAAFASICPNNFTLIGRNYRNLCQILPDVEEWGQILLIEILLRYVV 116 (1007)
Q Consensus 47 ~~~~LieiL~~LL~D~~p~VvgsAv~Af~EIcP~rldLihk~yrkLc~~L~d~dEWgQv~iL~lL~rY~r 116 (1007)
+.+-+..-|..+..|.|+.|-.+|+-++-.+-. .+.|-.-.|.+.|+.|.|-+|=-....++++.-|+.
T Consensus 195 d~~~~~~~l~~~~~~~D~~Vrt~A~eglL~L~e-g~kL~~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn 263 (823)
T KOG2259|consen 195 DREHAARGLIYLEHDQDFRVRTHAVEGLLALSE-GFKLSKACYSRAVKHLSDDYEDVRKAAVQLVSVWGN 263 (823)
T ss_pred cHHHHHHHHHHHhcCCCcchHHHHHHHHHhhcc-cccccHHHHHHHHHHhcchHHHHHHHHHHHHHHHHh
Confidence 445566656678899999999999999888864 666655679999999999999888889999988873
No 85
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=79.64 E-value=30 Score=45.67 Aligned_cols=106 Identities=22% Similarity=0.269 Sum_probs=70.4
Q ss_pred HHHHHHHhhcC-CCCchhhHHHHHHHHHHHCCCccccccceeeeccCCCHHHHHHHHHHHHhccCCCCHHHHHHHHHHhh
Q 001839 244 IVKPLLFILRS-SGASKYVVLCNIQVFAKALPHLFVPHYEDFFVSSSDSYQSKALKLEILSSIVTESSISSVFKEFQDYI 322 (1007)
Q Consensus 244 ~~~pLv~LL~S-~~eiqyvvL~~I~~i~~~~p~lF~~~l~~Ffv~~~Dp~~IK~lKLeIL~~Lane~Ni~~IL~EL~~Yv 322 (1007)
+....+.||.. ++.||-..|++|..||. ||-+. .+=..||..|.+|+
T Consensus 579 V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~------------FFGk~--------------------ksND~iLshLiTfL 626 (1431)
T KOG1240|consen 579 VEQMVSSLLSDSPPIVKRALLESIIPLCV------------FFGKE--------------------KSNDVILSHLITFL 626 (1431)
T ss_pred HHHHHHHHHcCCchHHHHHHHHHHHHHHH------------Hhhhc--------------------ccccchHHHHHHHh
Confidence 33344677764 56889999999888874 66442 11124788899999
Q ss_pred ccCChhHHHHHHHHHHHHHHhCccc-HHHHHHHHHHHHHhhhccccccCCCCCccchhhHHHHHHHHHHc
Q 001839 323 RDPDRRFAADTVAAIGLCARKLPKM-ANTCVEGLLALIRQELLTSDIESGNGEADVLIQSIISIKSIIKQ 391 (1007)
Q Consensus 323 ~d~D~~fv~~aI~AIG~~A~k~p~~-a~~cl~~Ll~LLs~~~~~s~~~~~~~~~~vV~EsVvvIk~Llq~ 391 (1007)
.|.|..+..+-+..|.-++.-.... .+ +.|+-||.+... ++++.||.-++-.+.-|++.
T Consensus 627 NDkDw~LR~aFfdsI~gvsi~VG~rs~s---eyllPLl~Q~lt-------D~EE~Viv~aL~~ls~Lik~ 686 (1431)
T KOG1240|consen 627 NDKDWRLRGAFFDSIVGVSIFVGWRSVS---EYLLPLLQQGLT-------DGEEAVIVSALGSLSILIKL 686 (1431)
T ss_pred cCccHHHHHHHHhhccceEEEEeeeeHH---HHHHHHHHHhcc-------CcchhhHHHHHHHHHHHHHh
Confidence 9999999998888886655554443 23 446666665432 55677776666666666644
No 86
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=78.07 E-value=40 Score=39.11 Aligned_cols=139 Identities=14% Similarity=0.177 Sum_probs=88.4
Q ss_pred HHHhhccCChhHHHHHHHHHHHHHHhCcccHHHH-----HHHHHHHHHhhhccccccCCCCCccchhhHHHHHHHHHHcC
Q 001839 318 FQDYIRDPDRRFAADTVAAIGLCARKLPKMANTC-----VEGLLALIRQELLTSDIESGNGEADVLIQSIISIKSIIKQD 392 (1007)
Q Consensus 318 L~~Yv~d~D~~fv~~aI~AIG~~A~k~p~~a~~c-----l~~Ll~LLs~~~~~s~~~~~~~~~~vV~EsVvvIk~Llq~~ 392 (1007)
+..|+.+.+..+++.|.+.||.|+++-|.+-..+ +..|+..++. +....+-..+.-.|..+||++
T Consensus 129 ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~ls~----------~~~~~~r~kaL~AissLIRn~ 198 (342)
T KOG2160|consen 129 LLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKILSS----------DDPNTVRTKALFAISSLIRNN 198 (342)
T ss_pred HHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHHHcc----------CCCchHHHHHHHHHHHHHhcC
Confidence 3349999999999999999999999999877655 4556666653 222335566777899999999
Q ss_pred CchHHH---------HHHhhhc-cCchhhHHhhhhhccccccCCCCcc-ccHHHHHHHHHHhhc-cCcHHHHHHHHHHHH
Q 001839 393 PSCHEK---------LFRSLDS-IKVPEARVMIIWMVGEYSSVGVKIP-RMLTTVLKYLAWCFK-SEAVETKLQILNTTI 460 (1007)
Q Consensus 393 P~~~~~---------L~~~ld~-I~~p~ArAsIIWLLGEY~~~~e~ip-~ia~DvLR~l~k~F~-~E~~~VKlqILtlaa 460 (1007)
+..... |...+.. =++...++.++++++-+-......- .+.+..+.+.+.++. .....++...+++..
T Consensus 199 ~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~~~~f~~~~~~l~~~l~~~~~e~~l~~~l 278 (342)
T KOG2160|consen 199 KPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIASSLGFQRVLENLISSLDFEVNEAALTALL 278 (342)
T ss_pred cHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhHHHHHHhhccchhhhHHHHHHHH
Confidence 876543 4444433 2457888999999887643100000 112222333344443 345566666666666
Q ss_pred HHhhhc
Q 001839 461 KVLLCA 466 (1007)
Q Consensus 461 KL~~~~ 466 (1007)
++....
T Consensus 279 ~~l~~~ 284 (342)
T KOG2160|consen 279 SLLSEL 284 (342)
T ss_pred HHHHHH
Confidence 665443
No 87
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=75.60 E-value=2.2e+02 Score=35.46 Aligned_cols=216 Identities=14% Similarity=0.160 Sum_probs=120.5
Q ss_pred ChHHHHHHHHHH----HhcCCHH---------HHHHHHHHHHHh---hcCCCCchhhHHHHHHHHHHHCCCcccccccee
Q 001839 221 NSAVVLAAAGVH----WIMSPKE---------DVKRIVKPLLFI---LRSSGASKYVVLCNIQVFAKALPHLFVPHYEDF 284 (1007)
Q Consensus 221 NsAVVlaaa~l~----~~lap~~---------~l~~~~~pLv~L---L~S~~eiqyvvL~~I~~i~~~~p~lF~~~l~~F 284 (1007)
+|-++.+|+..+ .|+++.. ....+++.|+.- ..+..+.|--....+-+|+...|+...+-+..|
T Consensus 463 ~p~~~~ncsw~~~nlv~h~a~a~~~~~S~l~~fY~ai~~~Lv~~t~~~~Ne~n~R~s~fsaLgtli~~~~d~V~~~~a~~ 542 (858)
T COG5215 463 CPFRSINCSWRKENLVDHIAKAVREVESFLAKFYLAILNALVKGTELALNESNLRVSLFSALGTLILICPDAVSDILAGF 542 (858)
T ss_pred cchHHhhhHHHHHhHHHhhhhhhccccchhHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhhcchhHHHHHHHH
Confidence 455666666544 3454421 234466666532 234577888888888888888898888877777
Q ss_pred eeccCCCHHHHHHHHH----HHH-hccCCCCHHHHHHHHHH-hhccCChhHHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Q 001839 285 FVSSSDSYQSKALKLE----ILS-SIVTESSISSVFKEFQD-YIRDPDRRFAADTVAAIGLCARKLPKMANTCVEGLLAL 358 (1007)
Q Consensus 285 fv~~~Dp~~IK~lKLe----IL~-~Lane~Ni~~IL~EL~~-Yv~d~D~~fv~~aI~AIG~~A~k~p~~a~~cl~~Ll~L 358 (1007)
|- +-..||+ ++. .|++++-. .++||+. |+. +....|+.-+ .-+..+.+..+..++++
T Consensus 543 ~~-------~~~~kl~~~isv~~q~l~~eD~~--~~~elqSN~~~-----vl~aiir~~~---~~ie~v~D~lm~Lf~r~ 605 (858)
T COG5215 543 YD-------YTSKKLDECISVLGQILATEDQL--LVEELQSNYIG-----VLEAIIRTRR---RDIEDVEDQLMELFIRI 605 (858)
T ss_pred HH-------HHHHHHHHHHHHhhhhhhhHHHH--HHHHHHHHHHH-----HHHHHHHhcC---CCcccHHHHHHHHHHHH
Confidence 52 3344554 232 23334322 3777775 433 2222222222 13456888899999999
Q ss_pred HHhhhccccccCCCCCccchhh-HHHHHHHHHHcCCchHHH--------HHHhhhccCchhhHHhhhhhccccccCC-CC
Q 001839 359 IRQELLTSDIESGNGEADVLIQ-SIISIKSIIKQDPSCHEK--------LFRSLDSIKVPEARVMIIWMVGEYSSVG-VK 428 (1007)
Q Consensus 359 Ls~~~~~s~~~~~~~~~~vV~E-sVvvIk~Llq~~P~~~~~--------L~~~ld~I~~p~ArAsIIWLLGEY~~~~-e~ 428 (1007)
|... +..++-+ ....|..+...-.+.++. |.+.+ ..++-....+.+-++|.-++.. ++
T Consensus 606 les~-----------~~t~~~~dV~~aIsal~~sl~e~Fe~y~~~fiPyl~~al-n~~d~~v~~~avglvgdlantl~~d 673 (858)
T COG5215 606 LEST-----------KPTTAFGDVYTAISALSTSLEERFEQYASKFIPYLTRAL-NCTDRFVLNSAVGLVGDLANTLGTD 673 (858)
T ss_pred Hhcc-----------CCchhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHh-cchhHHHHHHHHHHHHHHHHHhhhh
Confidence 9842 2223322 223344333222222222 55555 3344444556678888876532 22
Q ss_pred ccccHHHHHHHHHHhhccC--cHHHHHHHHHHHHHHhhh
Q 001839 429 IPRMLTTVLKYLAWCFKSE--AVETKLQILNTTIKVLLC 465 (1007)
Q Consensus 429 ip~ia~DvLR~l~k~F~~E--~~~VKlqILtlaaKL~~~ 465 (1007)
+-..+.++...++.....+ +..+|-.||..+.-+.+.
T Consensus 674 f~~y~d~~ms~LvQ~lss~~~~R~lKPaiLSvFgDIAla 712 (858)
T COG5215 674 FNIYADVLMSSLVQCLSSEATHRDLKPAILSVFGDIALA 712 (858)
T ss_pred HHHHHHHHHHHHHHHhcChhhccccchHHHHHHHHHHHH
Confidence 2223566667777776665 457899999888777654
No 88
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=75.60 E-value=12 Score=48.56 Aligned_cols=109 Identities=20% Similarity=0.329 Sum_probs=80.2
Q ss_pred cchhhhHHHHHHH----HhhcCCCChhHHHHHHHHHHHHhhc-CchhhHhhHHHHH----HHHhcCCChhHHHHHHHHHH
Q 001839 5 RLHVISPLVLVAV----GKCARDPSVFVRKCAANALPKLHEL-RQEEITSAIEEIV----GILLNDRSPGVVGAAAAAFA 75 (1007)
Q Consensus 5 RVp~I~piv~~aI----kk~~~D~SPYVRKtAA~AI~Kly~l-dpe~~~~~LieiL----~~LL~D~~p~VvgsAv~Af~ 75 (1007)
|++.|+|+++.|+ +++..-..-.||-+|++.+--+++- .|.+-++-+..+. ..-+=|++-.+-.||.+||.
T Consensus 417 ~l~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDrevncRRAAsAAlq 496 (1133)
T KOG1943|consen 417 LLEDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDREVNCRRAASAALQ 496 (1133)
T ss_pred HHHHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCchhhHhHHHHHHHH
Confidence 3457778777764 4555667778999999998888875 4533444333333 33445999999999999999
Q ss_pred HhC------CCCccch-----------HHHHHHHHHhCCCCChhhHHHHHHHHHH
Q 001839 76 SIC------PNNFTLI-----------GRNYRNLCQILPDVEEWGQILLIEILLR 113 (1007)
Q Consensus 76 EIc------P~rldLi-----------hk~yrkLc~~L~d~dEWgQv~iL~lL~r 113 (1007)
|.. |..++|+ ...|+.||.-+..++.+-+.++=++++.
T Consensus 497 E~VGR~~n~p~Gi~Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~~L~t~ 551 (1133)
T KOG1943|consen 497 ENVGRQGNFPHGISLISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPVFNHLLTK 551 (1133)
T ss_pred HHhccCCCCCCchhhhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHHHHHHHhc
Confidence 995 5555553 3459999999999999999988888875
No 89
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=75.28 E-value=18 Score=44.02 Aligned_cols=142 Identities=14% Similarity=0.132 Sum_probs=96.5
Q ss_pred cCCChHHHHHHHHHHHhcCCH-HH-----H-HHHHHHHHHhhcCC-CCchhhHHHHHHHHHHHCC---------Cccccc
Q 001839 218 WSHNSAVVLAAAGVHWIMSPK-ED-----V-KRIVKPLLFILRSS-GASKYVVLCNIQVFAKALP---------HLFVPH 280 (1007)
Q Consensus 218 qS~NsAVVlaaa~l~~~lap~-~~-----l-~~~~~pLv~LL~S~-~eiqyvvL~~I~~i~~~~p---------~lF~~~ 280 (1007)
+..++.+.++||-+.-+++.- .+ + ..++..|+.||.++ .+++--+.-.|.-|+...| +.+.|-
T Consensus 120 ~~~~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pL 199 (514)
T KOG0166|consen 120 RDDNPTLQFEAAWALTNIASGTSEQTKVVVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPL 199 (514)
T ss_pred cCCChhHHHHHHHHHHHHhcCchhhccccccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHH
Confidence 567799999999998887641 11 1 23566778999874 4555544444444443332 344444
Q ss_pred cceeeeccCCCHHHHHHHHHHHHhccCCC-------CHHHHHHHHHHhhccCChhHHHHHHHHHHHHHHhCcccHH----
Q 001839 281 YEDFFVSSSDSYQSKALKLEILSSIVTES-------SISSVFKEFQDYIRDPDRRFAADTVAAIGLCARKLPKMAN---- 349 (1007)
Q Consensus 281 l~~Ffv~~~Dp~~IK~lKLeIL~~Lane~-------Ni~~IL~EL~~Yv~d~D~~fv~~aI~AIG~~A~k~p~~a~---- 349 (1007)
+..+. .+++..+.+-..=.|.+||--. ++..||.=|..-+.+.|.++..+|.-||..++.--++...
T Consensus 200 l~~l~--~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~ 277 (514)
T KOG0166|consen 200 LRLLN--KSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVID 277 (514)
T ss_pred HHHhc--cccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHH
Confidence 44333 2344456666777888888755 4778888888888999999999999999999877666554
Q ss_pred -HHHHHHHHHHHh
Q 001839 350 -TCVEGLLALIRQ 361 (1007)
Q Consensus 350 -~cl~~Ll~LLs~ 361 (1007)
.++..|+.||..
T Consensus 278 ~gvv~~LV~lL~~ 290 (514)
T KOG0166|consen 278 AGVVPRLVDLLGH 290 (514)
T ss_pred ccchHHHHHHHcC
Confidence 445678888863
No 90
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=74.24 E-value=13 Score=46.39 Aligned_cols=113 Identities=21% Similarity=0.185 Sum_probs=88.4
Q ss_pred cccchhhhHHHHHHHHhhcCCCChhHHHHHHHHHHHHhhc---Cchh-hHhhHHHHHHHHhcCCChhHHHHHHHHHHHhC
Q 001839 3 GIRLHVISPLVLVAVGKCARDPSVFVRKCAANALPKLHEL---RQEE-ITSAIEEIVGILLNDRSPGVVGAAAAAFASIC 78 (1007)
Q Consensus 3 sIRVp~I~piv~~aIkk~~~D~SPYVRKtAA~AI~Kly~l---dpe~-~~~~LieiL~~LL~D~~p~VvgsAv~Af~EIc 78 (1007)
+.|+.--+|.+.-.|.+-++.++|-||--||--|..+-.. ..++ ....+--+|..-|....|-|+|+.+-|+..|+
T Consensus 790 g~r~kpylpqi~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGvvLyEylgeeypEvLgsILgAikaI~ 869 (1172)
T KOG0213|consen 790 GGRVKPYLPQICSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGVVLYEYLGEEYPEVLGSILGAIKAIV 869 (1172)
T ss_pred hhccccchHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhHHHHHhcCcccHHHHHHHHHHHHHHH
Confidence 5688888889999999999999999999999888776654 3322 22335556777788899999999999998887
Q ss_pred CC-----CccchHHHHHHHHHhCCCCChhhHHHHHHHHHHhh
Q 001839 79 PN-----NFTLIGRNYRNLCQILPDVEEWGQILLIEILLRYV 115 (1007)
Q Consensus 79 P~-----rldLihk~yrkLc~~L~d~dEWgQv~iL~lL~rY~ 115 (1007)
.- +.-.|....-+|.-+|+.-.|=-|...|+++-+-|
T Consensus 870 nvigm~km~pPi~dllPrltPILknrheKVqen~IdLvg~Ia 911 (1172)
T KOG0213|consen 870 NVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGTIA 911 (1172)
T ss_pred HhccccccCCChhhhcccchHhhhhhHHHHHHHHHHHHHHHH
Confidence 32 22335555668888888889999999999998877
No 91
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=73.55 E-value=1.6e+02 Score=37.66 Aligned_cols=291 Identities=16% Similarity=0.142 Sum_probs=145.6
Q ss_pred hhHHHHHHHHhhcCCCChhHHHHHHHHHHHHhhcCchhhHhhHHHHHHHHhcCCChhHHHHHHHHHHHhC---CCCccch
Q 001839 9 ISPLVLVAVGKCARDPSVFVRKCAANALPKLHELRQEEITSAIEEIVGILLNDRSPGVVGAAAAAFASIC---PNNFTLI 85 (1007)
Q Consensus 9 I~piv~~aIkk~~~D~SPYVRKtAA~AI~Kly~ldpe~~~~~LieiL~~LL~D~~p~VvgsAv~Af~EIc---P~rldLi 85 (1007)
+..=.+.+|-....|+=+.||+.|.-.|.-|-.--|+.+.--|.-++ .-|.|.+.-+.+.|.+.+..+. |+.--.+
T Consensus 301 ly~rfievLe~lS~D~L~~vk~raL~ti~~lL~~kPEqE~~LL~~lV-NKlGDpqnKiaskAsylL~~L~~~HPnMK~Vv 379 (988)
T KOG2038|consen 301 LYFRFIEVLEELSKDPLEEVKKRALKTIYDLLTNKPEQENNLLVLLV-NKLGDPQNKIASKASYLLEGLLAKHPNMKIVV 379 (988)
T ss_pred HHHHHHHHHHHHccccHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHH-HhcCCcchhhhhhHHHHHHHHHhhCCcceeeh
Confidence 34445677888899999999999999998887778843433344444 4589999999999999998884 5432222
Q ss_pred HHHHHHHHHhCCCCChhhHHHHHHHHHHhhhhccc--ccch--hh---hhhhhhcccCCCcccccccccccccCCCCCCc
Q 001839 86 GRNYRNLCQILPDVEEWGQILLIEILLRYVVASHG--LVKE--SI---MSSLLCIESSHSEKDVFDVNVALEDNGIPSRT 158 (1007)
Q Consensus 86 hk~yrkLc~~L~d~dEWgQv~iL~lL~rY~r~~~~--~~kp--~~---~f~~~~~~~~~~~~~~~~~~~~l~~q~~~~~~ 158 (1007)
-..+.+|+- -+.+++-.+-+.+..|....-...+ +..- ++ -|.-...+. +. +++ .
T Consensus 380 i~EIer~~F-Rpn~~~ra~Yyav~fLnQ~~Lshke~dvAnrLi~iYF~lFk~l~~~~---~~----------d~~----k 441 (988)
T KOG2038|consen 380 IDEIERLAF-RPNVSERAHYYAVIFLNQMKLSHKESDVANRLISIYFSLFKTLVGKK---DK----------DNR----K 441 (988)
T ss_pred HHHHHHHHc-ccCccccceeehhhhhhhhHhccchHHHHHHHHHHHHHHHHHHHHhh---hh----------hhh----h
Confidence 222212210 1334444444444444322110000 0000 00 011000000 00 000 0
Q ss_pred cchhhhhhhccccccccccccccCCCcccccccccCccccCC--CCChhHHHHHHhhcccccCCChHHHHHHHHHHHhcC
Q 001839 159 YDSELVNLVSRSYIEGLGEYLTRSSDTNARSSDLNGARFTSG--KTNDDVKLLLQCTSPLLWSHNSAVVLAAAGVHWIMS 236 (1007)
Q Consensus 159 ~~~~~~~~~~~~~~~~~de~~~~~~~~~~~~~~~~~~~~~~~--~~D~D~~lLL~~~~pLLqS~NsAVVlaaa~l~~~la 236 (1007)
.+...+.. +.+ +..+.++.... .+.-+-|+| +|+.-++-|+|-+..
T Consensus 442 ~~k~~~k~--------------kks------~k~~k~e~~~~e~~~e~nsrll------------SAlLTGvNRAfPfaq 489 (988)
T KOG2038|consen 442 DDKGAAKK--------------KKS------NKKDKKEEVSTESPIELNSRLL------------SALLTGVNRAFPFAQ 489 (988)
T ss_pred cccchhhc--------------ccc------cccchhhhhcccchhhhhHHHH------------HHHHhcccccCCccc
Confidence 00000000 000 00000111100 111122222 567777777775544
Q ss_pred CH-HHHHHHHHHHHHhhcC-CCCchhhHHHHHHHHHHHCCCccccccceeeeccCCCHHHHHHHHHHHHhccCCCCHHHH
Q 001839 237 PK-EDVKRIVKPLLFILRS-SGASKYVVLCNIQVFAKALPHLFVPHYEDFFVSSSDSYQSKALKLEILSSIVTESSISSV 314 (1007)
Q Consensus 237 p~-~~l~~~~~pLv~LL~S-~~eiqyvvL~~I~~i~~~~p~lF~~~l~~Ffv~~~Dp~~IK~lKLeIL~~Lane~Ni~~I 314 (1007)
.. ..+..=++-|..|+.+ +-|+..-+|-.|-++...+.-+=..||+..|-..-||.-+-.-|-.++.+|.
T Consensus 490 ~~ddk~~~~~~tLFkl~HssNFNTsVQaLmLlfQvs~~~~~vSDRyY~aLY~kLLdP~l~~sSKq~m~LnLl-------- 561 (988)
T KOG2038|consen 490 TADDKLEEQMKTLFKLTHSSNFNTSVQALMLLFQVSKKNDYVSDRYYRALYRKLLDPRLMNSSKQAMFLNLL-------- 561 (988)
T ss_pred CchHHHHHHhHHHHHHHhhcccchhHHHHHHHHHHHHhhhhhHHHHHHHHHHHhcCcccCchHHHHHHHHHH--------
Confidence 33 3456666777777644 5566666676677776666555556788888777787533333333322221
Q ss_pred HHHHHHhhccCChhHHHHHHHHHHHHHH-hCcccHHHHHHHHHHHHHh
Q 001839 315 FKEFQDYIRDPDRRFAADTVAAIGLCAR-KLPKMANTCVEGLLALIRQ 361 (1007)
Q Consensus 315 L~EL~~Yv~d~D~~fv~~aI~AIG~~A~-k~p~~a~~cl~~Ll~LLs~ 361 (1007)
.+- -..+.+..-|++=|+.|-++|. .-|..+..|+-.|.+|+..
T Consensus 562 yks---lK~D~ni~RV~AFvKRlLQVa~~q~P~~i~G~l~Llsel~Ka 606 (988)
T KOG2038|consen 562 YKS---LKEDINIQRVRAFVKRLLQVAVQQQPPFICGILFLLSELLKA 606 (988)
T ss_pred HHH---HHhhhhHHHHHHHHHHHHHHHHhcCCchhHhHHHHHHHHHHh
Confidence 111 1123344445555556656655 4577888888888777763
No 92
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=73.19 E-value=1.4e+02 Score=33.77 Aligned_cols=129 Identities=17% Similarity=0.095 Sum_probs=78.8
Q ss_pred HHH-HhhcccccCCChHHHHHHHHHHHhc--CCHHHHHHHHHHHHHhhc-CCCCchhhHHHHHHHHHHHCC-Cccccccc
Q 001839 208 LLL-QCTSPLLWSHNSAVVLAAAGVHWIM--SPKEDVKRIVKPLLFILR-SSGASKYVVLCNIQVFAKALP-HLFVPHYE 282 (1007)
Q Consensus 208 lLL-~~~~pLLqS~NsAVVlaaa~l~~~l--ap~~~l~~~~~pLv~LL~-S~~eiqyvvL~~I~~i~~~~p-~lF~~~l~ 282 (1007)
-++ +-+.|.++|.+++|=-.+.+++-.+ -.+........-+...+. .+.+++-++|+.|--|...++ ..|...-.
T Consensus 26 ~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~~~~~ 105 (298)
T PF12719_consen 26 SLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKELAKEHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFDSESD 105 (298)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhccchhc
Confidence 444 4455999999998887777764222 222222222223344443 367888899998888877765 33333211
Q ss_pred eeeeccCCCHHHHHHHHHHHHhccCCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHHHHhCcccH-HHHHHHHHHH
Q 001839 283 DFFVSSSDSYQSKALKLEILSSIVTESSISSVFKEFQDYIRDPDRRFAADTVAAIGLCARKLPKMA-NTCVEGLLAL 358 (1007)
Q Consensus 283 ~Ffv~~~Dp~~IK~lKLeIL~~Lane~Ni~~IL~EL~~Yv~d~D~~fv~~aI~AIG~~A~k~p~~a-~~cl~~Ll~L 358 (1007)
+. .......+++=|..|+.+.+.++...++.+++++-..---.. ..++..|+-+
T Consensus 106 --------~~--------------~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~~~~vL~~Lll~ 160 (298)
T PF12719_consen 106 --------ND--------------ESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISDPPKVLSRLLLL 160 (298)
T ss_pred --------cC--------------ccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 11 344556677778888888888899999999988655432222 4566666544
No 93
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=72.72 E-value=12 Score=42.35 Aligned_cols=81 Identities=27% Similarity=0.274 Sum_probs=57.5
Q ss_pred HHHHHHHHhhcCCCChhHHHHHHHHHHHHhhcCchhhHhhHHHHHHHHhcCCChhHHHHHHHHHHHhCCCCccchHHHHH
Q 001839 11 PLVLVAVGKCARDPSVFVRKCAANALPKLHELRQEEITSAIEEIVGILLNDRSPGVVGAAAAAFASICPNNFTLIGRNYR 90 (1007)
Q Consensus 11 piv~~aIkk~~~D~SPYVRKtAA~AI~Kly~ldpe~~~~~LieiL~~LL~D~~p~VvgsAv~Af~EIcP~rldLihk~yr 90 (1007)
+-.+.++++.+.|.++.||..|+.|+.++ -+| .-.+.|++ .|-+|.+..|-.+|+.++..+-..+ ...
T Consensus 73 ~~av~~l~~~l~d~~~~vr~~a~~aLg~~--~~~-~a~~~li~---~l~~d~~~~vR~~aa~aL~~~~~~~------a~~ 140 (335)
T COG1413 73 EEAVPLLRELLSDEDPRVRDAAADALGEL--GDP-EAVPPLVE---LLENDENEGVRAAAARALGKLGDER------ALD 140 (335)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHcc--CCh-hHHHHHHH---HHHcCCcHhHHHHHHHHHHhcCchh------hhH
Confidence 34567888999999999999999988865 223 22233333 2233899999999999999997665 244
Q ss_pred HHHHhCCCCChhh
Q 001839 91 NLCQILPDVEEWG 103 (1007)
Q Consensus 91 kLc~~L~d~dEWg 103 (1007)
.|.+.+.+-..+.
T Consensus 141 ~l~~~l~~~~~~~ 153 (335)
T COG1413 141 PLLEALQDEDSGS 153 (335)
T ss_pred HHHHHhccchhhh
Confidence 5666666655544
No 94
>COG1470 Predicted membrane protein [Function unknown]
Probab=72.33 E-value=9.9 Score=45.29 Aligned_cols=63 Identities=16% Similarity=0.202 Sum_probs=49.4
Q ss_pred EEEEEEEeCCCCceeeeEeeccccchhhhhhhhhhhccccccccCCCCCCcccCCcccccCCCCeeEEEEEEEcCCCCcc
Q 001839 757 CLETFFENCSSETMSEVTLVDEESHKALDLADLTLATTASSLTSQSDLPTLVPMEEITSLEPGQTMKRILEVRFHHHLLP 836 (1007)
Q Consensus 757 ~v~l~f~N~s~~~i~~i~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~f~~i~~l~p~~~~~~~~~idF~~~~~~ 836 (1007)
.+.+.++|.++.+++||.|.=+ .|.|.+- .+.++ .|++|+||++-++.+-|.-...+-+
T Consensus 400 ~i~i~I~NsGna~LtdIkl~v~----~PqgWei----------------~Vd~~-~I~sL~pge~~tV~ltI~vP~~a~a 458 (513)
T COG1470 400 TIRISIENSGNAPLTDIKLTVN----GPQGWEI----------------EVDES-TIPSLEPGESKTVSLTITVPEDAGA 458 (513)
T ss_pred eEEEEEEecCCCccceeeEEec----CCccceE----------------EECcc-cccccCCCCcceEEEEEEcCCCCCC
Confidence 4788899999999999999764 5777431 24555 8999999999999999998887766
Q ss_pred ceEE
Q 001839 837 LKLA 840 (1007)
Q Consensus 837 ~~~~ 840 (1007)
=.-.
T Consensus 459 GdY~ 462 (513)
T COG1470 459 GDYR 462 (513)
T ss_pred CcEE
Confidence 4433
No 95
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=71.11 E-value=27 Score=36.11 Aligned_cols=123 Identities=15% Similarity=0.312 Sum_probs=76.6
Q ss_pred HHHHHHHHHHHHHhhcC-CCCchhhHHHHHHHHHHHC-CCccccccceee------eccCCCHHHHHHHHHHHHhccCCC
Q 001839 238 KEDVKRIVKPLLFILRS-SGASKYVVLCNIQVFAKAL-PHLFVPHYEDFF------VSSSDSYQSKALKLEILSSIVTES 309 (1007)
Q Consensus 238 ~~~l~~~~~pLv~LL~S-~~eiqyvvL~~I~~i~~~~-p~lF~~~l~~Ff------v~~~Dp~~IK~lKLeIL~~Lane~ 309 (1007)
...+.+.+.-+..||++ +++.|+.+++-+..++... ++.|..|+..++ +...||..++...+..|..|.
T Consensus 20 ~~~l~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~--- 96 (165)
T PF08167_consen 20 KSALHKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLF--- 96 (165)
T ss_pred HHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH---
Confidence 45667777778888876 5788999999888888877 788876655443 122566666666666666542
Q ss_pred CHHHHHHHHHHhhccCChhHHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhccccccCCCCCccchhhHHHHHHHHH
Q 001839 310 SISSVFKEFQDYIRDPDRRFAADTVAAIGLCARKLPKMANTCVEGLLALIRQELLTSDIESGNGEADVLIQSIISIKSII 389 (1007)
Q Consensus 310 Ni~~IL~EL~~Yv~d~D~~fv~~aI~AIG~~A~k~p~~a~~cl~~Ll~LLs~~~~~s~~~~~~~~~~vV~EsVvvIk~Ll 389 (1007)
.|++.. +++.++. + . +.....+..++.+++. ..+...++..+..++
T Consensus 97 ----------~~~~~~-p~l~Rei----~--t----p~l~~~i~~ll~l~~~-------------~~~~~~~l~~L~~ll 142 (165)
T PF08167_consen 97 ----------DLIRGK-PTLTREI----A--T----PNLPKFIQSLLQLLQD-------------SSCPETALDALATLL 142 (165)
T ss_pred ----------HHhcCC-CchHHHH----h--h----ccHHHHHHHHHHHHhc-------------cccHHHHHHHHHHHH
Confidence 233321 2333331 0 1 1123455666666651 234556777899999
Q ss_pred HcCCchHH
Q 001839 390 KQDPSCHE 397 (1007)
Q Consensus 390 q~~P~~~~ 397 (1007)
+.||..+.
T Consensus 143 ~~~ptt~r 150 (165)
T PF08167_consen 143 PHHPTTFR 150 (165)
T ss_pred HHCCcccc
Confidence 99997644
No 96
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=70.78 E-value=35 Score=45.06 Aligned_cols=110 Identities=17% Similarity=0.085 Sum_probs=77.1
Q ss_pred hhhhHHHHHHHHhhcCCCChhHHHHHHHHHHHHhhc-CchhhHhhHHHHHHHHhcCCChhHHHHHHHHHHHhC--CCCcc
Q 001839 7 HVISPLVLVAVGKCARDPSVFVRKCAANALPKLHEL-RQEEITSAIEEIVGILLNDRSPGVVGAAAAAFASIC--PNNFT 83 (1007)
Q Consensus 7 p~I~piv~~aIkk~~~D~SPYVRKtAA~AI~Kly~l-dpe~~~~~LieiL~~LL~D~~p~VvgsAv~Af~EIc--P~rld 83 (1007)
..++..|-..+...++|+.|+||++-..+|.-|+.. ..+..-+.|...|-..|+|+|...-|+=+-.+.-|| -..-.
T Consensus 573 ~~L~~~V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk~ksND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG~rs 652 (1431)
T KOG1240|consen 573 QALHHTVEQMVSSLLSDSPPIVKRALLESIIPLCVFFGKEKSNDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVGWRS 652 (1431)
T ss_pred HHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhhhcccccchHHHHHHHhcCccHHHHHHHHhhccceEEEEeeee
Confidence 456777888899999999999999999999999986 332233456777888999999988766322222222 11100
Q ss_pred chHHHHHHHHHhCCCCChhhHHHHHHHHHHhhh
Q 001839 84 LIGRNYRNLCQILPDVEEWGQILLIEILLRYVV 116 (1007)
Q Consensus 84 Lihk~yrkLc~~L~d~dEWgQv~iL~lL~rY~r 116 (1007)
+-.-..--|..-|.|-+|.--+..|..|.-.+.
T Consensus 653 ~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik 685 (1431)
T KOG1240|consen 653 VSEYLLPLLQQGLTDGEEAVIVSALGSLSILIK 685 (1431)
T ss_pred HHHHHHHHHHHhccCcchhhHHHHHHHHHHHHH
Confidence 111123467788899999988888888887764
No 97
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=68.92 E-value=4.3 Score=51.17 Aligned_cols=54 Identities=9% Similarity=0.154 Sum_probs=39.4
Q ss_pred ccCCCHHHHHHHHHHHHhccCCCCHHHHHHHHHHhh--------c--------cCChhHHHHHHHHHHHH
Q 001839 287 SSSDSYQSKALKLEILSSIVTESSISSVFKEFQDYI--------R--------DPDRRFAADTVAAIGLC 340 (1007)
Q Consensus 287 ~~~Dp~~IK~lKLeIL~~Lane~Ni~~IL~EL~~Yv--------~--------d~D~~fv~~aI~AIG~~ 340 (1007)
-.+++..||.+.-..|+-|+-...|.+||..|-=+. + +....|.+.|.+-|-++
T Consensus 753 P~t~aD~IRalAc~~L~GLaR~~tVrQIltKLpLvt~~~~q~lm~ePV~~Dkr~~H~~fck~A~~Ll~~~ 822 (1516)
T KOG1832|consen 753 PPTTADCIRALACRVLLGLARDDTVRQILTKLPLVTNERAQILMAEPVTYDKRHEHLQFCKLASALLKEA 822 (1516)
T ss_pred CCCcHHHHHHHHHHHHhccccCcHHHHHHHhCccccchHHHHHhhCcccccchhHHHHHHHHHHHHHHHH
Confidence 457888999999999999999999999998653221 1 22236777777766544
No 98
>PF02296 Alpha_adaptin_C: Alpha adaptin AP2, C-terminal domain; InterPro: IPR003164 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. AP (adaptor protein) complexes are found in coated vesicles and clathrin-coated pits. AP complexes connect cargo proteins and lipids to clathrin at vesicle budding sites, as well as binding accessory proteins that regulate coat assembly and disassembly (such as AP180, epsins and auxilin). There are different AP complexes in mammals. AP1 is responsible for the transport of lysosomal hydrolases between the TGN and endosomes []. AP2 associates with the plasma membrane and is responsible for endocytosis []. AP3 is responsible for protein trafficking to lysosomes and other related organelles []. AP4 is less well characterised. AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). For example, in AP1 these subunits are gamma-1-adaptin, beta-1-adaptin, mu-1 and sigma-1, while in AP2 they are alpha-adaptin, beta-2-adaptin, mu-2 and sigma-2. Each subunit has a specific function. Adaptins recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal ear (appendage) domains. Mu recognises tyrosine-based sorting signals within the cytoplasmic domains of transmembrane cargo proteins []. One function of clathrin and AP2 complex-mediated endocytosis is to regulate the number of GABA(A) receptors available at the cell surface []. AP adaptor alpha-adaptin can be divided into a trunk domain and the C-terminal appendage domain (or ear domain), separated by a linker region. The C-terminal appendage domain regulates translocation of endocytic accessory proteins to the bud site []. This entry represents a subdomain of the appendage (ear) domain of alpha-adaptin from AP clathrin adaptor complexes. This domain has a three-layer arrangement, alpha-beta-alpha, with a bifurcated antiparallel beta-sheet []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030131 clathrin adaptor complex; PDB: 1KYF_A 1B9K_A 1QTS_A 1KYU_A 2VJ0_A 1KY6_A 1W80_A 3HS8_A 1KYD_A 1QTP_A ....
Probab=68.87 E-value=34 Score=33.46 Aligned_cols=104 Identities=15% Similarity=0.193 Sum_probs=60.3
Q ss_pred ccccccCCHHHHHHHhhcCCCCc-ccccceeccc--CcCcccccccchhhcchhhhhhHHHHHHHhhhcccceeeecCcc
Q 001839 859 FIKPVPMDMETFIEMESRLPGMF-EYARSCTFTD--HLGEVDKDTDESSLLKDKYLVICESLASKMLSNANIFLVSVDMP 935 (1007)
Q Consensus 859 l~~p~~ms~~~f~~~~~~L~GM~-E~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~an~~~v~~~~~ 935 (1007)
|+.|+.|+.++|.+.=..|.|=- |. +..|+- .... ....-.++++.--.+++++
T Consensus 1 F~~p~~l~~~~Ff~RWkql~~~~~E~--Q~vf~~~~~~~~-----------------~~~~~~~~~l~g~~~~vl~---- 57 (113)
T PF02296_consen 1 FMEPTTLSSEDFFQRWKQLGGPPQEA--QEVFKLKDAKRP-----------------MDLESIRRKLEGFGFAVLD---- 57 (113)
T ss_dssp GEEE----HHHHHHHHTTT-SGGGEE--EEEEE----SS--------------------HHHHHHHHHHHTSEEET----
T ss_pred CCCCccCCHHHHHHHHHhccCCcccc--EEEEcccccCCc-----------------ccHHHHHHHHhcCCeEecC----
Confidence 57899999999999999998754 54 555551 1111 1133467778888888875
Q ss_pred cccccCCCCCCceeeeeccccCC----ceEEEEEEeccccCCCcccEEEEcccchhHHHHHH
Q 001839 936 VAAKFDDASGLSLRFSSEILGNS----VPCLITITVEGKCSEPLKVSAKVNCEETVFGLNLL 993 (1007)
Q Consensus 936 ~~~~~~~~~~~~~rfa~~t~~~~----~~~lit~~~~~~~~~~~~~~~~vn~e~~v~g~~l~ 993 (1007)
+.|.-.+| =++|-+++++ ..||+.|+.. .... ...|||-|-+-.+--.|+
T Consensus 58 ---~vDpnp~n--~v~Agi~~t~~~g~~gcLlRlE~n-~~~~--~~RlTvRst~~~vs~~l~ 111 (113)
T PF02296_consen 58 ---GVDPNPNN--IVGAGIFHTKSSGNVGCLLRLEPN-QDAK--MFRLTVRSTDPSVSKALC 111 (113)
T ss_dssp ---SSSSSTTS--EEEEEEEE-S-S-EEEEEEEEEEE-TTTT--EEEEEEEESSHHHHHHHH
T ss_pred ---CCCCCccc--EEEEEEEEecCCCcEEEEEEEeEC-CcCC--eEEEEEEECChhHHHHHh
Confidence 23332222 3555555544 5788888763 1222 578999998887744443
No 99
>smart00543 MIF4G Middle domain of eukaryotic initiation factor 4G (eIF4G). Also occurs in NMD2p and CBP80. The domain is rich in alpha-helices and may contain multiple alpha-helical repeats. In eIF4G, this domain binds eIF4A, eIF3, RNA and DNA. Ponting (TiBS) "Novel eIF4G domain homologues (in press)
Probab=68.81 E-value=1.4e+02 Score=30.55 Aligned_cols=159 Identities=18% Similarity=0.186 Sum_probs=83.4
Q ss_pred HHHhccCCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhccccccCCCCCccchhh
Q 001839 301 ILSSIVTESSISSVFKEFQDYIRDPDRRFAADTVAAIGLCARKLPKMANTCVEGLLALIRQELLTSDIESGNGEADVLIQ 380 (1007)
Q Consensus 301 IL~~Lane~Ni~~IL~EL~~Yv~d~D~~fv~~aI~AIG~~A~k~p~~a~~cl~~Ll~LLs~~~~~s~~~~~~~~~~vV~E 380 (1007)
+|-.| +++|+..++.||.++..+ +++.....++.|-.+|...|..+.-+. .|+..+.... ..+..+
T Consensus 7 ~lnkL-s~~n~~~~~~~l~~~~~~-~~~~~~~l~~~i~~~~~~~~~~~~~ya-~L~~~l~~~~-----------~~f~~~ 72 (200)
T smart00543 7 LINKL-SPSNFESIIKELLKLNNS-DKNLRKYILELIFEKAVEEPNFIPAYA-RLCALLNAKN-----------PDFGSL 72 (200)
T ss_pred HHhhC-CHHHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHHHHcCcchHHHHH-HHHHHHHHHH-----------HHHHHH
Confidence 34455 479999999999987654 457888899999999998887664443 3444443210 012222
Q ss_pred HHHHHHHHHHcCCchHHHHHHhhhccCchhhHHhhhhhccccccCCCCccccHHHHHHHHHHhhcc-------CcHHHHH
Q 001839 381 SIISIKSIIKQDPSCHEKLFRSLDSIKVPEARVMIIWMVGEYSSVGVKIPRMLTTVLKYLAWCFKS-------EAVETKL 453 (1007)
Q Consensus 381 sVvvIk~Llq~~P~~~~~L~~~ld~I~~p~ArAsIIWLLGEY~~~~e~ip~ia~DvLR~l~k~F~~-------E~~~VKl 453 (1007)
.|..+..-++.. .+..+. ..-....+.+.++||-....-.-+..+-++++.+...... ...++=+
T Consensus 73 ll~~~~~~f~~~-------~e~~~~-~~~~~~~~~i~fl~eL~~~~~i~~~~i~~~l~~ll~~~~~~~~~~~~~~ve~l~ 144 (200)
T smart00543 73 LLERLQEEFEKG-------LESEEE-SDKQRRLGLVRFLGELYNFQVLTSKIILELLKELLNDLTKLDPPRSDFSVECLL 144 (200)
T ss_pred HHHHHHHHHHHH-------HHHHHH-HhhhhHHhHHHHHHHHHHcccCcHHHHHHHHHHHHhccCCCCCCCcHHHHHHHH
Confidence 111111111111 011111 1123345567788874322111123455677777766544 2345556
Q ss_pred HHHHHHHHHhhhcCCCChHHHHHHHHHHHH
Q 001839 454 QILNTTIKVLLCAKGGDMWTITRLFSYLLE 483 (1007)
Q Consensus 454 qILtlaaKL~~~~p~e~~~~i~~L~qyvLe 483 (1007)
.+|..+.+.+.+ ++....+..+++.+-.
T Consensus 145 ~lL~~~G~~l~~--~~~~~~~~~~l~~l~~ 172 (200)
T smart00543 145 SLLPTCGKDLER--EKSPKLLDEILERLQD 172 (200)
T ss_pred HHHHHhhHHHcC--cccHHHHHHHHHHHHH
Confidence 677777777654 1223345555554433
No 100
>PF09066 B2-adapt-app_C: Beta2-adaptin appendage, C-terminal sub-domain; InterPro: IPR015151 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. AP (adaptor protein) complexes are found in coated vesicles and clathrin-coated pits. AP complexes connect cargo proteins and lipids to clathrin at vesicle budding sites, as well as binding accessory proteins that regulate coat assembly and disassembly (such as AP180, epsins and auxilin). There are different AP complexes in mammals. AP1 is responsible for the transport of lysosomal hydrolases between the TGN and endosomes []. AP2 associates with the plasma membrane and is responsible for endocytosis []. AP3 is responsible for protein trafficking to lysosomes and other related organelles []. AP4 is less well characterised. AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). For example, in AP1 these subunits are gamma-1-adaptin, beta-1-adaptin, mu-1 and sigma-1, while in AP2 they are alpha-adaptin, beta-2-adaptin, mu-2 and sigma-2. Each subunit has a specific function. Adaptins recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal ear (appendage) domains. Mu recognises tyrosine-based sorting signals within the cytoplasmic domains of transmembrane cargo proteins []. One function of clathrin and AP2 complex-mediated endocytosis is to regulate the number of GABA(A) receptors available at the cell surface []. This entry represents a subdomain of the appendage (ear) domain of beta-adaptin from AP clathrin adaptor complexes. This domain has a three-layer arrangement, alpha-beta-alpha, with a bifurcated antiparallel beta-sheet []. This domain is required for binding to clathrin, and its subsequent polymerisation. Furthermore, a hydrophobic patch present in the domain also binds to a subset of D-phi-F/W motif-containing proteins that are bound by the alpha-adaptin appendage domain (epsin, AP180, eps15) []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030131 clathrin adaptor complex; PDB: 1E42_B 2G30_A 2IV9_B 2IV8_A 3HS9_A 3H1Z_A.
Probab=67.58 E-value=34 Score=32.85 Aligned_cols=110 Identities=23% Similarity=0.255 Sum_probs=64.4
Q ss_pred cccccCCHHHHHHHhhcCCCCcccccceecccCcCcccccccchhhcchhhhhhHHHHHHHhhhcccceeeecCcccccc
Q 001839 860 IKPVPMDMETFIEMESRLPGMFEYARSCTFTDHLGEVDKDTDESSLLKDKYLVICESLASKMLSNANIFLVSVDMPVAAK 939 (1007)
Q Consensus 860 ~~p~~ms~~~f~~~~~~L~GM~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~an~~~v~~~~~~~~~ 939 (1007)
+-.-.|+.++|.+.=..|+--++...+...+.. ..... -.++-|+..|+..|.++ +
T Consensus 2 ~~d~~~~~~~F~~~W~sl~~~~~~e~~~~~~~~------------------~~~~~-~i~~~L~~~nI~~iA~~-----~ 57 (114)
T PF09066_consen 2 VEDGSMDPEEFQEMWKSLPDSNQQELSIQLNAS------------------VPSPD-AIEEKLQANNIFTIASG-----K 57 (114)
T ss_dssp -TT----HHHHHHHHHHS-GGG--EEEEEETT----------------------HH-HHHHHHHCTT-EEEEEE-----E
T ss_pred CCCCccCHHHHHHHHHhCCcccceEEEEecccc------------------CCcHH-HHHHHHHHCCEEEEecC-----C
Confidence 345679999999999999988855334444310 11123 34556699999999875 2
Q ss_pred cCCCCCCcee--eeeccccCCceEEEEEEeccccCCCcccEEEEcccchhHHHHHHHHHHHhh
Q 001839 940 FDDASGLSLR--FSSEILGNSVPCLITITVEGKCSEPLKVSAKVNCEETVFGLNLLNRIVNFL 1000 (1007)
Q Consensus 940 ~~~~~~~~~r--fa~~t~~~~~~~lit~~~~~~~~~~~~~~~~vn~e~~v~g~~l~~~~~~~~ 1000 (1007)
.+ ++... ||+++- ++..+|+-+.+..... .++++|-|+..-++..++.-+..+|
T Consensus 58 -~~--~~~~~~y~s~~~~-~~~~fL~El~~~~~~~---~~~v~vK~~~~~~~~~f~~~~~~iL 113 (114)
T PF09066_consen 58 -VD--NGQKFFYFSAKTT-NGIWFLVELTIDPGSP---SVKVTVKSENPEMAPLFLQLFESIL 113 (114)
T ss_dssp -CT--T-EEEEEEEEEBT-TS-EEEEEEEE-TT-S---SEEEEEEESSCCCHHHHHHHHHHHC
T ss_pred -CC--ccccEEEEEEEcC-CCcEEEEEEEEcCCCc---cEEEEEecCCHHHHHHHHHHHHHHh
Confidence 22 22333 777764 7889999998854322 4789999999888777766666665
No 101
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=67.47 E-value=12 Score=41.44 Aligned_cols=75 Identities=20% Similarity=0.261 Sum_probs=57.0
Q ss_pred HHHHhhcCCC--ChhHHHHHHHHHHHHhhcCchhhHhhHHHHHHHHhc----CCChhHHHHHHHHHHHhCCCCc-cchHH
Q 001839 15 VAVGKCARDP--SVFVRKCAANALPKLHELRQEEITSAIEEIVGILLN----DRSPGVVGAAAAAFASICPNNF-TLIGR 87 (1007)
Q Consensus 15 ~aIkk~~~D~--SPYVRKtAA~AI~Kly~ldpe~~~~~LieiL~~LL~----D~~p~VvgsAv~Af~EIcP~rl-dLihk 87 (1007)
..|++.+.|+ ..|||-.|.-|+..+....| ..++.+++.+..++. .+...|.|+=|....+++|..+ ..|.+
T Consensus 114 ~~L~~li~~~~~~~yvR~aa~~aL~~l~~~~~-~~Re~vi~~f~~ll~~~l~~~~~~~~~~Lv~~~~dL~~~EL~~~I~~ 192 (249)
T PF06685_consen 114 EPLKELIEDPDADEYVRMAAISALAFLVHEGP-ISREEVIQYFRELLNYFLERNPSFLWGSLVADICDLYPEELLPEIRK 192 (249)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHhcCHHHhHHHHHH
Confidence 4677788777 68999999999999999998 667777777666654 3444567888888899999873 44665
Q ss_pred HHH
Q 001839 88 NYR 90 (1007)
Q Consensus 88 ~yr 90 (1007)
.|.
T Consensus 193 ~f~ 195 (249)
T PF06685_consen 193 AFE 195 (249)
T ss_pred HHH
Confidence 555
No 102
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=67.32 E-value=6.6 Score=29.12 Aligned_cols=28 Identities=43% Similarity=0.475 Sum_probs=23.5
Q ss_pred HHHHHHHHhcCCChhHHHHHHHHHHHhC
Q 001839 51 IEEIVGILLNDRSPGVVGAAAAAFASIC 78 (1007)
Q Consensus 51 LieiL~~LL~D~~p~VvgsAv~Af~EIc 78 (1007)
|++.+.++|+|.++.|--+|+.+|.+++
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~ 28 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIA 28 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 4567778999999999999999998875
No 103
>PF04931 DNA_pol_phi: DNA polymerase phi; InterPro: IPR007015 Proteins of this family are predominantly nucleolar. The majority are described as transcription factor transactivators. The family also includes the fifth essential DNA polymerase (Pol5p) of Schizosaccharomyces pombe (Fission yeast) and Saccharomyces cerevisiae (Baker's yeast) (2.7.7.7 from EC). Pol5p is localized exclusively to the nucleolus and binds near or at the enhancer region of rRNA-encoding DNA repeating units.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006351 transcription, DNA-dependent
Probab=66.51 E-value=4.8 Score=51.55 Aligned_cols=8 Identities=50% Similarity=0.638 Sum_probs=4.6
Q ss_pred HHHHHhhh
Q 001839 527 LVLVECIF 534 (1007)
Q Consensus 527 ~~la~~lf 534 (1007)
..+.++|+
T Consensus 588 ~vlveiLL 595 (784)
T PF04931_consen 588 EVLVEILL 595 (784)
T ss_pred HHHHHHHH
Confidence 45666654
No 104
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=65.08 E-value=13 Score=45.54 Aligned_cols=79 Identities=16% Similarity=0.177 Sum_probs=57.4
Q ss_pred HHhhcCCCChhHHHHHHHHHHHHhhcCchhhHhhHHHHHHHHhcCCChhHHHHHHHHHHHhCCCCccchHHHHHHHHHhC
Q 001839 17 VGKCARDPSVFVRKCAANALPKLHELRQEEITSAIEEIVGILLNDRSPGVVGAAAAAFASICPNNFTLIGRNYRNLCQIL 96 (1007)
Q Consensus 17 Ikk~~~D~SPYVRKtAA~AI~Kly~ldpe~~~~~LieiL~~LL~D~~p~VvgsAv~Af~EIcP~rldLihk~yrkLc~~L 96 (1007)
|-.++. -++-+.+-||-=|+|.|+.-| +..++-++-+-.|..|.+..|-..|+..|-.+|-+.-+++.++.--|+.+|
T Consensus 28 il~~~k-g~~k~K~Laaq~I~kffk~FP-~l~~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~kvaDvL~QlL 105 (556)
T PF05918_consen 28 ILDGVK-GSPKEKRLAAQFIPKFFKHFP-DLQEEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVSKVADVLVQLL 105 (556)
T ss_dssp HHHGGG-S-HHHHHHHHHHHHHHHCC-G-GGHHHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HHHHHHHHHHHT
T ss_pred HHHHcc-CCHHHHHHHHHHHHHHHhhCh-hhHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHhHHHHHHHHHH
Confidence 334444 368899999999999999999 544444455567888999999999999999999988889999999999988
Q ss_pred C
Q 001839 97 P 97 (1007)
Q Consensus 97 ~ 97 (1007)
.
T Consensus 106 ~ 106 (556)
T PF05918_consen 106 Q 106 (556)
T ss_dssp T
T ss_pred h
Confidence 6
No 105
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=64.63 E-value=66 Score=32.78 Aligned_cols=72 Identities=15% Similarity=0.122 Sum_probs=52.0
Q ss_pred HHHHhhcccccCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH-hhcCCCCchhhHHHHHHHHHHHCCCcccccc
Q 001839 208 LLLQCTSPLLWSHNSAVVLAAAGVHWIMSPKEDVKRIVKPLLF-ILRSSGASKYVVLCNIQVFAKALPHLFVPHY 281 (1007)
Q Consensus 208 lLL~~~~pLLqS~NsAVVlaaa~l~~~lap~~~l~~~~~pLv~-LL~S~~eiqyvvL~~I~~i~~~~p~lF~~~l 281 (1007)
++-+++.+.+..-|-+++|+++-.+=. . ...-+.++++|.. |-..++++++.+|..+..+++.+...|...+
T Consensus 4 ~iekATse~l~~~dw~~il~icD~I~~-~-~~~~k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~ev 76 (144)
T cd03568 4 LVEKATDEKLTSENWGLILDVCDKVKS-D-ENGAKDCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEV 76 (144)
T ss_pred HHHHHcCccCCCcCHHHHHHHHHHHhc-C-CccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHH
Confidence 455677888888888888887765432 1 2223456666654 4455799999999999999999998877664
No 106
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=63.30 E-value=4.7e+02 Score=34.51 Aligned_cols=126 Identities=20% Similarity=0.318 Sum_probs=73.2
Q ss_pred HHHHHHHHHcC-C--chHHH-HHHh-hhccCch--hhHHhhhhhccccccCCCCccccHHHHHHHHHHhhc-cCcHHHHH
Q 001839 382 IISIKSIIKQD-P--SCHEK-LFRS-LDSIKVP--EARVMIIWMVGEYSSVGVKIPRMLTTVLKYLAWCFK-SEAVETKL 453 (1007)
Q Consensus 382 VvvIk~Llq~~-P--~~~~~-L~~~-ld~I~~p--~ArAsIIWLLGEY~~~~e~ip~ia~DvLR~l~k~F~-~E~~~VKl 453 (1007)
|-.|+.+|.+. | +..+. |+.+ +...+.| --||...|++|.||+.-=+.+..+...++...+.+. +-+..||.
T Consensus 442 vgsl~~~L~K~s~~~~~mE~flv~hVfP~f~s~~g~Lrarac~vl~~~~~~df~d~~~l~~ale~t~~~l~~d~~lPV~V 521 (1010)
T KOG1991|consen 442 VGSLASILLKKSPYKSQMEYFLVNHVFPEFQSPYGYLRARACWVLSQFSSIDFKDPNNLSEALELTHNCLLNDNELPVRV 521 (1010)
T ss_pred HHHHHHHHccCCchHHHHHHHHHHHhhHhhcCchhHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHhccCCcCchhh
Confidence 33455665543 3 33344 4443 3445555 356777899999996421445666667776677776 44556777
Q ss_pred HHHHHHHHHhhhcCCC----ChHHHHHHHHHHHHHHccCCChh-----------------------HHhHHHHHHHHccC
Q 001839 454 QILNTTIKVLLCAKGG----DMWTITRLFSYLLELAECDLNYD-----------------------VRDRARFFKKLFSH 506 (1007)
Q Consensus 454 qILtlaaKL~~~~p~e----~~~~i~~L~qyvLeLak~D~n~D-----------------------VRDRArfy~~LL~~ 506 (1007)
+.- +|.+.|+.+... ..+.+..+.|.+|.+.+.=.|-| .+.=|+-+++++..
T Consensus 522 eAa-lALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~ne~End~Lt~vme~iV~~fseElsPfA~eL~q~La~~F~k~l~~ 600 (1010)
T KOG1991|consen 522 EAA-LALQSFISNQEQADEKVSAHVPPIMQELLKLSNEVENDDLTNVMEKIVCKFSEELSPFAVELCQNLAETFLKVLQT 600 (1010)
T ss_pred HHH-HHHHHHHhcchhhhhhHhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHhc
Confidence 653 445666655321 23345566666666655333333 35667888888886
Q ss_pred CC
Q 001839 507 NL 508 (1007)
Q Consensus 507 ~~ 508 (1007)
+.
T Consensus 601 ~~ 602 (1010)
T KOG1991|consen 601 SE 602 (1010)
T ss_pred cC
Confidence 33
No 107
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=63.18 E-value=11 Score=39.62 Aligned_cols=70 Identities=26% Similarity=0.217 Sum_probs=56.1
Q ss_pred HHHHHHHHhhcCCCChhHHHHHHHHHHHHhhcCchhhHhhHHHHHHHHhcCCChhHHHHHHHHHHHhCCCCcc
Q 001839 11 PLVLVAVGKCARDPSVFVRKCAANALPKLHELRQEEITSAIEEIVGILLNDRSPGVVGAAAAAFASICPNNFT 83 (1007)
Q Consensus 11 piv~~aIkk~~~D~SPYVRKtAA~AI~Kly~ldpe~~~~~LieiL~~LL~D~~p~VvgsAv~Af~EIcP~rld 83 (1007)
|.+..-+.+.+.+.++|+||.|..+..+.+.. ...+.+.+++..++.|.+..|-=+.--+|.++.-..-+
T Consensus 119 ~~~~~~~~~W~~s~~~w~rR~~~v~~~~~~~~---~~~~~~l~~~~~~~~d~~~~vq~ai~w~L~~~~~~~~~ 188 (213)
T PF08713_consen 119 PEALELLEKWAKSDNEWVRRAAIVMLLRYIRK---EDFDELLEIIEALLKDEEYYVQKAIGWALREIGKKDPD 188 (213)
T ss_dssp GGHHHHHHHHHHCSSHHHHHHHHHCTTTHGGG---CHHHHHHHHHHHCTTGS-HHHHHHHHHHHHHHCTT-HH
T ss_pred HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHh---cCHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhCHH
Confidence 45677888999999999999999998876655 33567888888899999999999999999999755433
No 108
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=62.75 E-value=4e+02 Score=33.44 Aligned_cols=71 Identities=21% Similarity=0.143 Sum_probs=47.4
Q ss_pred hhhHHHHHHHHhhcCCCChhHHHHHHHHHHHHhhcCchhhHhhHHHHHHHHh-cCCChhHHHHHHHHHHHhCCC
Q 001839 8 VISPLVLVAVGKCARDPSVFVRKCAANALPKLHELRQEEITSAIEEIVGILL-NDRSPGVVGAAAAAFASICPN 80 (1007)
Q Consensus 8 ~I~piv~~aIkk~~~D~SPYVRKtAA~AI~Kly~ldpe~~~~~LieiL~~LL-~D~~p~VvgsAv~Af~EIcP~ 80 (1007)
.+.-.+..-+.+-+-|+.|-||.-|+.|+.|+-.+.- .....+..++..++ +|.+.-|-.+|+. -.++-+.
T Consensus 128 ~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~-neen~~~n~l~~~vqnDPS~EVRr~all-ni~vdns 199 (885)
T COG5218 128 VLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMEL-NEENRIVNLLKDIVQNDPSDEVRRLALL-NISVDNS 199 (885)
T ss_pred HHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccC-ChHHHHHHHHHHHHhcCcHHHHHHHHHH-HeeeCCC
Confidence 3445566677778899999999999999999876533 22334445555555 4888888766643 3344443
No 109
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=62.51 E-value=27 Score=45.91 Aligned_cols=110 Identities=19% Similarity=0.220 Sum_probs=82.3
Q ss_pred ccchhhhHHHHHHHHhhcCCCChhHHHHHHHHHHHHhhcCchhhHhhHHHHHHHHhcCCChhHHHHHHHHHHHhCCCC--
Q 001839 4 IRLHVISPLVLVAVGKCARDPSVFVRKCAANALPKLHELRQEEITSAIEEIVGILLNDRSPGVVGAAAAAFASICPNN-- 81 (1007)
Q Consensus 4 IRVp~I~piv~~aIkk~~~D~SPYVRKtAA~AI~Kly~ldpe~~~~~LieiL~~LL~D~~p~VvgsAv~Af~EIcP~r-- 81 (1007)
+|-|-+++.-..-+-+-+.|.+|-|||+|.+.+..|---|-=-.++++-+. -.+|.|.++.+-.=|=.-|.|+--..
T Consensus 990 v~fpnlie~~T~~Ly~rL~D~~~~vRkta~lvlshLILndmiKVKGql~eM-A~cl~D~~~~IsdlAk~FF~Els~k~n~ 1068 (1251)
T KOG0414|consen 990 VRFPNLIEPWTEHLYRRLRDESPSVRKTALLVLSHLILNDMIKVKGQLSEM-ALCLEDPNAEISDLAKSFFKELSSKGNT 1068 (1251)
T ss_pred hhcccccchhhHHHHHHhcCccHHHHHHHHHHHHHHHHhhhhHhcccHHHH-HHHhcCCcHHHHHHHHHHHHHhhhcccc
Confidence 577888888899999999999999999999999976544441256777764 56899999988766666788886432
Q ss_pred -ccchHHHHHHHHHhCCCCChhhHHHHHHHHHHhhh
Q 001839 82 -FTLIGRNYRNLCQILPDVEEWGQILLIEILLRYVV 116 (1007)
Q Consensus 82 -ldLihk~yrkLc~~L~d~dEWgQv~iL~lL~rY~r 116 (1007)
+.|+.....+|=+. .++|=.=..+++.|.-|..
T Consensus 1069 iynlLPdil~~Ls~~--~l~~~~~~~vm~~li~~ik 1102 (1251)
T KOG0414|consen 1069 IYNLLPDILSRLSNG--NLEEESYKTVMEFLIGLIK 1102 (1251)
T ss_pred hhhhchHHHHhhccC--cccchhhHHHHHHHHHHhc
Confidence 45555555666665 5666666778888888863
No 110
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=61.29 E-value=31 Score=42.57 Aligned_cols=103 Identities=17% Similarity=0.182 Sum_probs=68.7
Q ss_pred chhhhHHHHHHHHhhcCCCChhHHHHHHHHHHHHhhcCchhhHhhHHHHHHHHhcCCChhHHH---HHHHHHHHhCCCCc
Q 001839 6 LHVISPLVLVAVGKCARDPSVFVRKCAANALPKLHELRQEEITSAIEEIVGILLNDRSPGVVG---AAAAAFASICPNNF 82 (1007)
Q Consensus 6 Vp~I~piv~~aIkk~~~D~SPYVRKtAA~AI~Kly~ldpe~~~~~LieiL~~LL~D~~p~Vvg---sAv~Af~EIcP~rl 82 (1007)
-|.+..-.+.|+...+.|.+.-||+.|.-+|+.+.+-.| +....+.++|.+||.-.++..+. +|++.+...-|..
T Consensus 53 FP~l~~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~-~~v~kvaDvL~QlL~tdd~~E~~~v~~sL~~ll~~d~k~- 130 (556)
T PF05918_consen 53 FPDLQEEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNP-EHVSKVADVLVQLLQTDDPVELDAVKNSLMSLLKQDPKG- 130 (556)
T ss_dssp -GGGHHHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T---T-HHHHHHHHHHHTT---HHHHHHHHHHHHHHHHH-HHH-
T ss_pred ChhhHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHH-HHHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcCcHH-
Confidence 478888899999999999999999999999999999888 77888999999999866665544 4444444444432
Q ss_pred cchHHHHHHHHHhCC---CCChhhHHHHHHHHHHhh
Q 001839 83 TLIGRNYRNLCQILP---DVEEWGQILLIEILLRYV 115 (1007)
Q Consensus 83 dLihk~yrkLc~~L~---d~dEWgQv~iL~lL~rY~ 115 (1007)
...-|+..+. .-||--...+|.+|.-..
T Consensus 131 -----tL~~lf~~i~~~~~~de~~Re~~lkFl~~kl 161 (556)
T PF05918_consen 131 -----TLTGLFSQIESSKSGDEQVRERALKFLREKL 161 (556)
T ss_dssp -----HHHHHHHHHH---HS-HHHHHHHHHHHHHHG
T ss_pred -----HHHHHHHHHHhcccCchHHHHHHHHHHHHHH
Confidence 4566776665 456655666677665443
No 111
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=61.00 E-value=5e+02 Score=35.96 Aligned_cols=79 Identities=13% Similarity=0.127 Sum_probs=55.8
Q ss_pred ChhHHHHHHHHHHHHhhcCchh---hHhhHHHHHHHHhcCCChhHHHHHHHHHHHhCCCCccchHHHHHHHHHhCC---C
Q 001839 25 SVFVRKCAANALPKLHELRQEE---ITSAIEEIVGILLNDRSPGVVGAAAAAFASICPNNFTLIGRNYRNLCQILP---D 98 (1007)
Q Consensus 25 SPYVRKtAA~AI~Kly~ldpe~---~~~~LieiL~~LL~D~~p~VvgsAv~Af~EIcP~rldLihk~yrkLc~~L~---d 98 (1007)
.+--||-||++..++-.-.-+. ...+|+..|.+-=-|.++.|-+|-..-...+.+|+-..+.++|..+++-|. -
T Consensus 970 ~wnSk~GaAfGf~~i~~~a~~kl~p~l~kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~k~~vd~y~neIl~eLL~~lt 1049 (1702)
T KOG0915|consen 970 TWNSKKGAAFGFGAIAKQAGEKLEPYLKKLIPRLYRYQYDPDKKVQDAMTSIWNALITDSKKVVDEYLNEILDELLVNLT 1049 (1702)
T ss_pred hhhcccchhhchHHHHHHHHHhhhhHHHHhhHHHhhhccCCcHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhcc
Confidence 5667999999999987654322 344566666555569999998887777888889987666666665555442 2
Q ss_pred CChhh
Q 001839 99 VEEWG 103 (1007)
Q Consensus 99 ~dEWg 103 (1007)
..||-
T Consensus 1050 ~kewR 1054 (1702)
T KOG0915|consen 1050 SKEWR 1054 (1702)
T ss_pred chhHH
Confidence 68996
No 112
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=60.85 E-value=1.7e+02 Score=34.51 Aligned_cols=247 Identities=15% Similarity=0.150 Sum_probs=145.6
Q ss_pred HHhhcCCCChhHHHHHHHHHHHHhhcCchh----hHhhHHHHHHHHhcCCChhHHHHHHHHHHHh---CCCCccchHH-H
Q 001839 17 VGKCARDPSVFVRKCAANALPKLHELRQEE----ITSAIEEIVGILLNDRSPGVVGAAAAAFASI---CPNNFTLIGR-N 88 (1007)
Q Consensus 17 Ikk~~~D~SPYVRKtAA~AI~Kly~ldpe~----~~~~LieiL~~LL~D~~p~VvgsAv~Af~EI---cP~rldLihk-~ 88 (1007)
|.+..+| .--||..|+-||-.|-.+|... ....|..+. +|-+-++-.|--+|.-|+..+ -.+|-.|.|. .
T Consensus 132 i~qmmtd-~vevqcnaVgCitnLaT~d~nk~kiA~sGaL~plt-rLakskdirvqrnatgaLlnmThs~EnRr~LV~aG~ 209 (550)
T KOG4224|consen 132 ILQMMTD-GVEVQCNAVGCITNLATFDSNKVKIARSGALEPLT-RLAKSKDIRVQRNATGALLNMTHSRENRRVLVHAGG 209 (550)
T ss_pred HHHhcCC-CcEEEeeehhhhhhhhccccchhhhhhccchhhhH-hhcccchhhHHHHHHHHHHHhhhhhhhhhhhhccCC
Confidence 3344444 4568999999999998886522 334466544 577778888888877776555 3456666663 4
Q ss_pred HHHHHHhCCCCChhhHHHHHHHHHHhhhhcccccchhhhhhhhhcccCCCcccccccccccccCCCCCCccchhhhhhhc
Q 001839 89 YRNLCQILPDVEEWGQILLIEILLRYVVASHGLVKESIMSSLLCIESSHSEKDVFDVNVALEDNGIPSRTYDSELVNLVS 168 (1007)
Q Consensus 89 yrkLc~~L~d~dEWgQv~iL~lL~rY~r~~~~~~kp~~~f~~~~~~~~~~~~~~~~~~~~l~~q~~~~~~~~~~~~~~~~ 168 (1007)
..-|..+++.-|.=.|-+.-..+..-+-++. .
T Consensus 210 lpvLVsll~s~d~dvqyycttaisnIaVd~~------------------------------------------------~ 241 (550)
T KOG4224|consen 210 LPVLVSLLKSGDLDVQYYCTTAISNIAVDRR------------------------------------------------A 241 (550)
T ss_pred chhhhhhhccCChhHHHHHHHHhhhhhhhHH------------------------------------------------H
Confidence 6667777776666666554444433221110 0
Q ss_pred cccccccccccccCCCcccccccccCccccCCCCChhHHHHHHhhcccccCCChHHHHHHHHHHHhcCCHH-HHHH----
Q 001839 169 RSYIEGLGEYLTRSSDTNARSSDLNGARFTSGKTNDDVKLLLQCTSPLLWSHNSAVVLAAAGVHWIMSPKE-DVKR---- 243 (1007)
Q Consensus 169 ~~~~~~~de~~~~~~~~~~~~~~~~~~~~~~~~~D~D~~lLL~~~~pLLqS~NsAVVlaaa~l~~~lap~~-~l~~---- 243 (1007)
|+...+ .. -.++.++..|..+..+-|-..|....-.++... ++..
T Consensus 242 Rk~Laq-------------------ae-----------p~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~Yq~eiv~a 291 (550)
T KOG4224|consen 242 RKILAQ-------------------AE-----------PKLVPALVDLMDDGSDKVKCQAGLALRNLASDTEYQREIVEA 291 (550)
T ss_pred HHHHHh-------------------cc-----------cchHHHHHHHHhCCChHHHHHHHHHHhhhcccchhhhHHHhc
Confidence 000000 00 013445555566666777777777766666432 2222
Q ss_pred -HHHHHHHhhcCCCCchhhHHHHHHHH--HHHCCC---ccc--ccccee--eeccCCCHHHHHHHHHHHHhccC--CCCH
Q 001839 244 -IVKPLLFILRSSGASKYVVLCNIQVF--AKALPH---LFV--PHYEDF--FVSSSDSYQSKALKLEILSSIVT--ESSI 311 (1007)
Q Consensus 244 -~~~pLv~LL~S~~eiqyvvL~~I~~i--~~~~p~---lF~--~~l~~F--fv~~~Dp~~IK~lKLeIL~~Lan--e~Ni 311 (1007)
...-|++||+++. .. .+|..+..| +..+|. +.. -|++-. ..++.|...|+.-..+.|..||- +.|+
T Consensus 292 g~lP~lv~Llqs~~-~p-lilasVaCIrnisihplNe~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~ 369 (550)
T KOG4224|consen 292 GSLPLLVELLQSPM-GP-LILASVACIRNISIHPLNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNV 369 (550)
T ss_pred CCchHHHHHHhCcc-hh-HHHHHHHHHhhcccccCcccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhh
Confidence 2334578887641 11 233333333 223441 111 122211 23568888899999999999985 6788
Q ss_pred HHHHH-----HHHHhhccCChhHHHHHHHHHHHHHHhCc
Q 001839 312 SSVFK-----EFQDYIRDPDRRFAADTVAAIGLCARKLP 345 (1007)
Q Consensus 312 ~~IL~-----EL~~Yv~d~D~~fv~~aI~AIG~~A~k~p 345 (1007)
..|.. .|.+.+.|....|..+.-.+|+.+|..-.
T Consensus 370 ~~i~esgAi~kl~eL~lD~pvsvqseisac~a~Lal~d~ 408 (550)
T KOG4224|consen 370 SVIRESGAIPKLIELLLDGPVSVQSEISACIAQLALNDN 408 (550)
T ss_pred HHHhhcCchHHHHHHHhcCChhHHHHHHHHHHHHHhccc
Confidence 87754 67778889888999988888888886543
No 113
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=59.01 E-value=65 Score=35.93 Aligned_cols=101 Identities=18% Similarity=0.222 Sum_probs=70.9
Q ss_pred HHHHhhcCCCChhHHHHHHHHHHHHhhcCch-hh-HhhHHHHHHHHhcC-CChhHHHHHHHHHHHhCC--CCccchHHHH
Q 001839 15 VAVGKCARDPSVFVRKCAANALPKLHELRQE-EI-TSAIEEIVGILLND-RSPGVVGAAAAAFASICP--NNFTLIGRNY 89 (1007)
Q Consensus 15 ~aIkk~~~D~SPYVRKtAA~AI~Kly~ldpe-~~-~~~LieiL~~LL~D-~~p~VvgsAv~Af~EIcP--~rldLihk~y 89 (1007)
.-|.+.+.+++|-||..|..|+.-+-.-.+. .+ +.-+..+++..+.+ -+..|--+++.++..+.- +.=.++-+..
T Consensus 57 ~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~~~Ik~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~~~i 136 (254)
T PF04826_consen 57 SLIGSLLNDPNPSVREKALNALNNLSVNDENQEQIKMYIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLANYI 136 (254)
T ss_pred HHHHHHcCCCChHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHHhhH
Confidence 3567889999999999999988855322221 11 12233444444443 356677789999988853 2224566678
Q ss_pred HHHHHhCCCCChhhHHHHHHHHHHhh
Q 001839 90 RNLCQILPDVEEWGQILLIEILLRYV 115 (1007)
Q Consensus 90 rkLc~~L~d~dEWgQv~iL~lL~rY~ 115 (1007)
..|+.+|..-++=.|+.+|++|...+
T Consensus 137 ~~ll~LL~~G~~~~k~~vLk~L~nLS 162 (254)
T PF04826_consen 137 PDLLSLLSSGSEKTKVQVLKVLVNLS 162 (254)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHhc
Confidence 88999999889999999999999876
No 114
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=58.10 E-value=23 Score=43.47 Aligned_cols=78 Identities=19% Similarity=0.145 Sum_probs=57.9
Q ss_pred CCcccchhhhHHHHHHHHhhcCCCChhHHHHHHHHHHHHhhcCchhhHhhHHHHHHHHhcCCChhHHHHHHHHHHHhCCC
Q 001839 1 MAGIRLHVISPLVLVAVGKCARDPSVFVRKCAANALPKLHELRQEEITSAIEEIVGILLNDRSPGVVGAAAAAFASICPN 80 (1007)
Q Consensus 1 MssIRVp~I~piv~~aIkk~~~D~SPYVRKtAA~AI~Kly~ldpe~~~~~LieiL~~LL~D~~p~VvgsAv~Af~EIcP~ 80 (1007)
++.+..|.+++.+..-+. +-...++++|..|+.|+.++-..+|+...+.|..+. +-.+.++-|=.+|+.++.+.-|.
T Consensus 470 LGN~g~~~~i~~l~~~l~-~~~~~~~~iR~~Av~Alr~~a~~~p~~v~~~l~~i~--~n~~e~~EvRiaA~~~lm~t~P~ 546 (574)
T smart00638 470 LGNAGHPSSIKVLEPYLE-GAEPLSTFIRLAAILALRNLAKRDPRKVQEVLLPIY--LNRAEPPEVRMAAVLVLMETKPS 546 (574)
T ss_pred hhccCChhHHHHHHHhcC-CCCCCCHHHHHHHHHHHHHHHHhCchHHHHHHHHHH--cCCCCChHHHHHHHHHHHhcCCC
Confidence 356778888888887776 566778999999999999887778844444444432 12356788989999999998887
Q ss_pred C
Q 001839 81 N 81 (1007)
Q Consensus 81 r 81 (1007)
.
T Consensus 547 ~ 547 (574)
T smart00638 547 V 547 (574)
T ss_pred H
Confidence 5
No 115
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=58.06 E-value=42 Score=38.93 Aligned_cols=96 Identities=19% Similarity=0.178 Sum_probs=72.5
Q ss_pred hcCCCChhHHHHHHHHHHHHhhcCchhhH-----hhHHHHHHHHhcCCChhHHHHHHHHHHHhCCCC------ccchHHH
Q 001839 20 CARDPSVFVRKCAANALPKLHELRQEEIT-----SAIEEIVGILLNDRSPGVVGAAAAAFASICPNN------FTLIGRN 88 (1007)
Q Consensus 20 ~~~D~SPYVRKtAA~AI~Kly~ldpe~~~-----~~LieiL~~LL~D~~p~VvgsAv~Af~EIcP~r------ldLihk~ 88 (1007)
.+.+.++-||+.||--|..+.+-+|..|. ..+-.++..|-.|.+-.|...|+.|+.....+. +..++.
T Consensus 132 ~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G- 210 (342)
T KOG2160|consen 132 YLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNG- 210 (342)
T ss_pred HhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCC-
Confidence 89999999999999999999999995332 224444544445777777799999998775433 222343
Q ss_pred HHHHHHhCCC--CChhhHHHHHHHHHHhhh
Q 001839 89 YRNLCQILPD--VEEWGQILLIEILLRYVV 116 (1007)
Q Consensus 89 yrkLc~~L~d--~dEWgQv~iL~lL~rY~r 116 (1007)
|.-|.+.|.. .+-=.|+.++.++..+..
T Consensus 211 ~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~ 240 (342)
T KOG2160|consen 211 YQVLRDVLQSNNTSVKLKRKALFLLSLLLQ 240 (342)
T ss_pred HHHHHHHHHcCCcchHHHHHHHHHHHHHHH
Confidence 8888888877 788889999999888864
No 116
>cd06561 AlkD_like A new structural DNA glycosylase. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.
Probab=56.32 E-value=22 Score=37.01 Aligned_cols=63 Identities=22% Similarity=0.149 Sum_probs=51.6
Q ss_pred HHHHhhcCCCChhHHHHHHHHHHHHhhcCchhhHhhHHHHHHHHhcCCChhHHHHHHHHHHHhCC
Q 001839 15 VAVGKCARDPSVFVRKCAANALPKLHELRQEEITSAIEEIVGILLNDRSPGVVGAAAAAFASICP 79 (1007)
Q Consensus 15 ~aIkk~~~D~SPYVRKtAA~AI~Kly~ldpe~~~~~LieiL~~LL~D~~p~VvgsAv~Af~EIcP 79 (1007)
..+.+-+.+.++|+||+|..+..+.+.-. ...+.+.+++..++.|.+..|-=+..-+|.+++-
T Consensus 108 ~~~~~w~~s~~~~~rR~~~~~~~~~~~~~--~~~~~~l~~~~~~~~d~~~~Vqkav~w~L~~~~~ 170 (197)
T cd06561 108 DLLEEWAKSENEWVRRAAIVLLLRLIKKE--TDFDLLLEIIERLLHDEEYFVQKAVGWALREYGK 170 (197)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHHHHHhc--ccHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHh
Confidence 36788899999999999999999888762 3456788888999999999988887778887763
No 117
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=55.85 E-value=2.4e+02 Score=33.54 Aligned_cols=121 Identities=19% Similarity=0.208 Sum_probs=75.9
Q ss_pred chhhHHHHHHHHHHcCC----chHHH-HHHhh-hccCc---hhhHHhhhhhccccccCCCCccccHHHHHHHHHHhhccC
Q 001839 377 VLIQSIISIKSIIKQDP----SCHEK-LFRSL-DSIKV---PEARVMIIWMVGEYSSVGVKIPRMLTTVLKYLAWCFKSE 447 (1007)
Q Consensus 377 vV~EsVvvIk~Llq~~P----~~~~~-L~~~l-d~I~~---p~ArAsIIWLLGEY~~~~e~ip~ia~DvLR~l~k~F~~E 447 (1007)
-|+|.+..+..|+...+ +.|.. +.+.+ .-.+. +.-...+..++-.|.. +-|..+..+++.+.+.+-.-
T Consensus 191 gI~elLeil~sii~gf~~plk~eh~~fl~~vllPLh~~~~~~~y~~~L~~~~~~f~~---kdp~l~~~~i~~llk~WP~t 267 (409)
T PF01603_consen 191 GIAELLEILGSIINGFAVPLKEEHKQFLRKVLLPLHKSPHLSSYHQQLSYCVVQFLE---KDPSLAEPVIKGLLKHWPKT 267 (409)
T ss_dssp THHHHHHHHHHHHTT--SS--HHHHHHHHHTTGGGGGSTGGGGTHHHHHHHHHHHHH---H-GGGHHHHHHHHHHHS-SS
T ss_pred CHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHH---hCchhHHHHHHHHHHhCCCC
Confidence 47888888888887543 23443 33322 11111 1122344566666663 45778999999999999888
Q ss_pred cHHHHHHHHHHHHHHhhhcCCCC-hHHHHHHHHHHHHHHccCCChhHHhHHHHHH
Q 001839 448 AVETKLQILNTTIKVLLCAKGGD-MWTITRLFSYLLELAECDLNYDVRDRARFFK 501 (1007)
Q Consensus 448 ~~~VKlqILtlaaKL~~~~p~e~-~~~i~~L~qyvLeLak~D~n~DVRDRArfy~ 501 (1007)
...-....|+-...++-..+.+. ......+|+. +..|-.+.++.|-.||.++|
T Consensus 268 ~s~Kev~FL~el~~il~~~~~~~f~~i~~~lf~~-la~ci~S~h~qVAErAl~~w 321 (409)
T PF01603_consen 268 NSQKEVLFLNELEEILEVLPPEEFQKIMVPLFKR-LAKCISSPHFQVAERALYFW 321 (409)
T ss_dssp -HHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHH-HHHHHTSSSHHHHHHHHGGG
T ss_pred CchhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH-HHHHhCCCCHHHHHHHHHHH
Confidence 77788888999988877665432 2234456664 44567788999999999887
No 118
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=55.44 E-value=2.4e+02 Score=33.36 Aligned_cols=253 Identities=14% Similarity=0.142 Sum_probs=140.6
Q ss_pred HHHHHhhcCCCChhHHHHHHHHHHHHhhcCchhhHhhH-----HHHHHHHhcCCChhHHHHHHHHHHHhCCCCc---cch
Q 001839 14 LVAVGKCARDPSVFVRKCAANALPKLHELRQEEITSAI-----EEIVGILLNDRSPGVVGAAAAAFASICPNNF---TLI 85 (1007)
Q Consensus 14 ~~aIkk~~~D~SPYVRKtAA~AI~Kly~ldpe~~~~~L-----ieiL~~LL~D~~p~VvgsAv~Af~EIcP~rl---dLi 85 (1007)
+.++.|.++-++--||+.|.-|+..+-+... .+.+| +.+|-.||.-.++.|---|-.|+..|--++- -|.
T Consensus 169 L~pltrLakskdirvqrnatgaLlnmThs~E--nRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaVd~~~Rk~La 246 (550)
T KOG4224|consen 169 LEPLTRLAKSKDIRVQRNATGALLNMTHSRE--NRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDRRARKILA 246 (550)
T ss_pred hhhhHhhcccchhhHHHHHHHHHHHhhhhhh--hhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhhhHHHHHHHH
Confidence 4456678888899999999999988765433 12222 2456678888899888888888777754431 111
Q ss_pred ---HHHHHHHHHhCCCCChhhHHHHHHHHHHhhhhcccccchhhhhhhhhcccCCCcccccccccccccCCCCCCccchh
Q 001839 86 ---GRNYRNLCQILPDVEEWGQILLIEILLRYVVASHGLVKESIMSSLLCIESSHSEKDVFDVNVALEDNGIPSRTYDSE 162 (1007)
Q Consensus 86 ---hk~yrkLc~~L~d~dEWgQv~iL~lL~rY~r~~~~~~kp~~~f~~~~~~~~~~~~~~~~~~~~l~~q~~~~~~~~~~ 162 (1007)
.|.+++|+.++.+-+.-.|+..=..|...+-...
T Consensus 247 qaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~------------------------------------------- 283 (550)
T KOG4224|consen 247 QAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDTE------------------------------------------- 283 (550)
T ss_pred hcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccch-------------------------------------------
Confidence 2345666666666666555544333332221100
Q ss_pred hhhhhccccccccccccccCCCcccccccccCccccCCCCChhHHHHHHhhcccccCCChHHHHHHHHHH--HhcCCHHH
Q 001839 163 LVNLVSRSYIEGLGEYLTRSSDTNARSSDLNGARFTSGKTNDDVKLLLQCTSPLLWSHNSAVVLAAAGVH--WIMSPKED 240 (1007)
Q Consensus 163 ~~~~~~~~~~~~~de~~~~~~~~~~~~~~~~~~~~~~~~~D~D~~lLL~~~~pLLqS~NsAVVlaaa~l~--~~lap~~~ 240 (1007)
|...--+ +. . |-....||||..--.++|-+-|+ +.+.|..+
T Consensus 284 --------Yq~eiv~-----------------ag----~--------lP~lv~Llqs~~~plilasVaCIrnisihplNe 326 (550)
T KOG4224|consen 284 --------YQREIVE-----------------AG----S--------LPLLVELLQSPMGPLILASVACIRNISIHPLNE 326 (550)
T ss_pred --------hhhHHHh-----------------cC----C--------chHHHHHHhCcchhHHHHHHHHHhhcccccCcc
Confidence 0000000 00 0 11123345666655666666666 34456433
Q ss_pred H----HHHHHHHHHhhcC-CC-CchhhHHHHHHHHHHHCC---C-ccccc-cceeeeccCC-CHHHHHHHHHHHHhccCC
Q 001839 241 V----KRIVKPLLFILRS-SG-ASKYVVLCNIQVFAKALP---H-LFVPH-YEDFFVSSSD-SYQSKALKLEILSSIVTE 308 (1007)
Q Consensus 241 l----~~~~~pLv~LL~S-~~-eiqyvvL~~I~~i~~~~p---~-lF~~~-l~~Ffv~~~D-p~~IK~lKLeIL~~Lane 308 (1007)
. ....+||++||+- ++ |+|.-+...+.-++..+. . +|+.- +....++.-| |-.++..-=--+..|+-.
T Consensus 327 ~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD~pvsvqseisac~a~Lal~ 406 (550)
T KOG4224|consen 327 VLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLDGPVSVQSEISACIAQLALN 406 (550)
T ss_pred cceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcCChhHHHHHHHHHHHHHhc
Confidence 1 3467899999974 44 599888877777765322 2 33322 2223333334 556666655556666655
Q ss_pred CCHHHH------HHHHHHhhccCChhHHHHHHHHHHHHHHhCcccH
Q 001839 309 SSISSV------FKEFQDYIRDPDRRFAADTVAAIGLCARKLPKMA 348 (1007)
Q Consensus 309 ~Ni~~I------L~EL~~Yv~d~D~~fv~~aI~AIG~~A~k~p~~a 348 (1007)
+|.+.- +.=|..+.-+...++.-.+..|++.+......++
T Consensus 407 d~~k~~lld~gi~~iLIp~t~s~s~Ev~gNaAaAL~Nlss~v~~Ya 452 (550)
T KOG4224|consen 407 DNDKEALLDSGIIPILIPWTGSESEEVRGNAAAALINLSSDVEHYA 452 (550)
T ss_pred cccHHHHhhcCCcceeecccCccchhhcccHHHHHHhhhhhhHHHH
Confidence 555432 2233445555566677777777777665554443
No 119
>KOG1189 consensus Global transcriptional regulator, cell division control protein [Amino acid transport and metabolism]
Probab=54.42 E-value=11 Score=47.04 Aligned_cols=11 Identities=9% Similarity=0.447 Sum_probs=5.0
Q ss_pred HHHHHHHHhcC
Q 001839 51 IEEIVGILLND 61 (1007)
Q Consensus 51 LieiL~~LL~D 61 (1007)
|.+.++..+.|
T Consensus 180 LsD~~e~~I~~ 190 (960)
T KOG1189|consen 180 LSDLMESAIED 190 (960)
T ss_pred HHHHHHHHhhc
Confidence 44444444444
No 120
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=53.46 E-value=5.7e+02 Score=32.34 Aligned_cols=75 Identities=23% Similarity=0.208 Sum_probs=54.7
Q ss_pred ccchhhhHHHHHHHHhhcCCCChhHHHHHHHHHHHHhhc---Cchh-hHhhHHHHHHHHhcCCChhHHHHHHHHHHHhC
Q 001839 4 IRLHVISPLVLVAVGKCARDPSVFVRKCAANALPKLHEL---RQEE-ITSAIEEIVGILLNDRSPGVVGAAAAAFASIC 78 (1007)
Q Consensus 4 IRVp~I~piv~~aIkk~~~D~SPYVRKtAA~AI~Kly~l---dpe~-~~~~LieiL~~LL~D~~p~VvgsAv~Af~EIc 78 (1007)
+|-.--.+.++-.|-+.++.+.|.||-.||--+..+-.. ..+. ....+-.+|..-|....|-|+|+.+.|+..|.
T Consensus 596 ~r~kp~l~~ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~iLyE~lge~ypEvLgsil~Ai~~I~ 674 (975)
T COG5181 596 FRGKPHLSMIVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGNILYENLGEDYPEVLGSILKAICSIY 674 (975)
T ss_pred hccCcchHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhHHHHHhcCcccHHHHHHHHHHHHHHh
Confidence 455455667777888999999999999999876655543 3321 33346667777888889999999888876664
No 121
>KOG2140 consensus Uncharacterized conserved protein [General function prediction only]
Probab=53.29 E-value=1.2e+02 Score=37.10 Aligned_cols=67 Identities=16% Similarity=0.291 Sum_probs=41.5
Q ss_pred HHHHHHHhccCCCCHHHHHHHHHH---------hhccC------ChhHHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHh
Q 001839 297 LKLEILSSIVTESSISSVFKEFQD---------YIRDP------DRRFAADTVAAIGLCARKLPKMANTCVEGLLALIRQ 361 (1007)
Q Consensus 297 lKLeIL~~Lane~Ni~~IL~EL~~---------Yv~d~------D~~fv~~aI~AIG~~A~k~p~~a~~cl~~Ll~LLs~ 361 (1007)
+++.=|.+=+|.+|+..|++||.. |+++. .+-|.-.-..-++.+-.+||.+....+.-|+-.+..
T Consensus 166 ksInglInkvn~sNi~~ii~eLfqeNiirgRgl~crsv~~aq~asp~ft~vyaALvAviNskfP~IgElLlkrLilqf~r 245 (739)
T KOG2140|consen 166 KSINGLINKVNASNIQEIIRELFQENIIRGRGLLCRSVMQAQAASPGFTPVYAALVAVINSKFPQIGELLLKRLILQFKR 245 (739)
T ss_pred HHhHHHHhhhhHHHHHHHHHHHHHHHHHhccchhHHHHHHHHhcCCCCcHHHHHHHHHHccCCchHHHHHHHHHHHHHHH
Confidence 445556666889999999999765 33221 111111112223446778999999888887766665
Q ss_pred hh
Q 001839 362 EL 363 (1007)
Q Consensus 362 ~~ 363 (1007)
.|
T Consensus 246 ~f 247 (739)
T KOG2140|consen 246 SF 247 (739)
T ss_pred Hh
Confidence 43
No 122
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=53.18 E-value=2e+02 Score=36.57 Aligned_cols=67 Identities=24% Similarity=0.220 Sum_probs=51.3
Q ss_pred CChhH-HHHHHhhcccccCCChHHHHHHHHHHHhcC--CHHHHHHHHHHHHHhhcC--CCCchhhHHHHHHH
Q 001839 202 TNDDV-KLLLQCTSPLLWSHNSAVVLAAAGVHWIMS--PKEDVKRIVKPLLFILRS--SGASKYVVLCNIQV 268 (1007)
Q Consensus 202 ~D~D~-~lLL~~~~pLLqS~NsAVVlaaa~l~~~la--p~~~l~~~~~pLv~LL~S--~~eiqyvvL~~I~~ 268 (1007)
+|+|+ ..|+..+...|.-|-|+|=..|+.+..++. |.+.=-.+++.|..+++. ++|+|-.||.+|..
T Consensus 119 idd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~dee~~v~n~l~~liqnDpS~EVRRaaLsnI~v 190 (892)
T KOG2025|consen 119 IDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKDEECPVVNLLKDLIQNDPSDEVRRAALSNISV 190 (892)
T ss_pred cCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCcHHHHHHHHHhhcc
Confidence 45555 456677778888999999999998876653 444445688899999975 57999999999865
No 123
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=52.79 E-value=1.9e+02 Score=39.53 Aligned_cols=148 Identities=9% Similarity=0.142 Sum_probs=91.2
Q ss_pred CCHHHHHHHHHHhhccCChhHHHHHHHHHHHHHHhCcccHH--HHHHHHHHHHHhhhccccccCCCCCccchhhHHHH-H
Q 001839 309 SSISSVFKEFQDYIRDPDRRFAADTVAAIGLCARKLPKMAN--TCVEGLLALIRQELLTSDIESGNGEADVLIQSIIS-I 385 (1007)
Q Consensus 309 ~Ni~~IL~EL~~Yv~d~D~~fv~~aI~AIG~~A~k~p~~a~--~cl~~Ll~LLs~~~~~s~~~~~~~~~~vV~EsVvv-I 385 (1007)
.++...|+-+...+..+-..+..+|++++..++..-|.+.. .+..+.-. .+ +.....|.|+++- +
T Consensus 812 ~sfD~yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL~~~dvq~~Vh~----R~--------~DssasVREAaldLv 879 (1692)
T KOG1020|consen 812 QSFDPYLKLILSVLGENAIALRTKALKCLSMIVEADPSVLSRPDVQEAVHG----RL--------NDSSASVREAALDLV 879 (1692)
T ss_pred HhhHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhcChHhhcCHHHHHHHHH----hh--------ccchhHHHHHHHHHH
Confidence 35556666666666666677888888888888877665432 11111111 11 1123457776652 2
Q ss_pred HHHHHcCCchHHHHHH-hhhccCch--hhHHhhhhhccccccCCCCccccHHHHHHHHHHhhccCcHHHHHHHHHHHHHH
Q 001839 386 KSIIKQDPSCHEKLFR-SLDSIKVP--EARVMIIWMVGEYSSVGVKIPRMLTTVLKYLAWCFKSEAVETKLQILNTTIKV 462 (1007)
Q Consensus 386 k~Llq~~P~~~~~L~~-~ld~I~~p--~ArAsIIWLLGEY~~~~e~ip~ia~DvLR~l~k~F~~E~~~VKlqILtlaaKL 462 (1007)
-+.+--+|+...+... ....|.|+ ..|-.+|-|+-+-|...+..+. .+++.-+|..+..+|+..+|-...-.+.|+
T Consensus 880 Grfvl~~~e~~~qyY~~i~erIlDtgvsVRKRvIKIlrdic~e~pdf~~-i~~~cakmlrRv~DEEg~I~kLv~etf~kl 958 (1692)
T KOG1020|consen 880 GRFVLSIPELIFQYYDQIIERILDTGVSVRKRVIKILRDICEETPDFSK-IVDMCAKMLRRVNDEEGNIKKLVRETFLKL 958 (1692)
T ss_pred hhhhhccHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCChhh-HHHHHHHHHHHhccchhHHHHHHHHHHHHH
Confidence 2233345665444222 22445554 4677888888887754444443 567777788888899887888888889999
Q ss_pred hhhcCCC
Q 001839 463 LLCAKGG 469 (1007)
Q Consensus 463 ~~~~p~e 469 (1007)
|+.-+.+
T Consensus 959 WF~p~~~ 965 (1692)
T KOG1020|consen 959 WFTPVPE 965 (1692)
T ss_pred hccCCCc
Confidence 9987543
No 124
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=51.60 E-value=61 Score=36.77 Aligned_cols=64 Identities=14% Similarity=0.187 Sum_probs=43.3
Q ss_pred HHHHHHHHhcCCChhHHHHHHHHHHHhC---CCCccchHH--------HHHHHHHhCCCCChhhHHHHHHHHHHhhh
Q 001839 51 IEEIVGILLNDRSPGVVGAAAAAFASIC---PNNFTLIGR--------NYRNLCQILPDVEEWGQILLIEILLRYVV 116 (1007)
Q Consensus 51 LieiL~~LL~D~~p~VvgsAv~Af~EIc---P~rldLihk--------~yrkLc~~L~d~dEWgQv~iL~lL~rY~r 116 (1007)
+..+|+.+ -+++.++..++..+.+++ |.+.++++. .|..+++.+..-|.+-+...+.+|+....
T Consensus 60 ~l~lL~~~--~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~ 134 (312)
T PF03224_consen 60 FLNLLNKL--SSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLLS 134 (312)
T ss_dssp --HHHHHH-----HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHc--cCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 33444443 457788899999999887 556666665 58888988887899989988888887764
No 125
>PF05110 AF-4: AF-4 proto-oncoprotein; InterPro: IPR007797 This family consist of family member 1 (proto-oncogene AF4), family member 2 or FMR2 (Fragile X E mental retardation syndrome), family member 3 or LAF4 (lymphoid nuclear protein related to AF4) and family member 4 (protein lilliputian). Lilliputian is a Drosophila AF4 protein homologue which contains an AT-hook domain. It represents a novel pair-rule gene that acts in cytoskeleton regulation, segmentation and morphogenesis in Drosophila []. These proteins have been linked to Homo sapiens diseases such as acute lymphoblastic leukemia and mental retardation [].
Probab=50.37 E-value=18 Score=48.10 Aligned_cols=13 Identities=46% Similarity=1.030 Sum_probs=5.6
Q ss_pred CCCCccchHHHHH
Q 001839 78 CPNNFTLIGRNYR 90 (1007)
Q Consensus 78 cP~rldLihk~yr 90 (1007)
+|+.+.|+..-|.
T Consensus 27 f~~~~pLF~ePYK 39 (1191)
T PF05110_consen 27 FPENFPLFGEPYK 39 (1191)
T ss_pred cCcCCccccCccc
Confidence 3444444443443
No 126
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=49.97 E-value=5.7e+02 Score=31.38 Aligned_cols=107 Identities=18% Similarity=0.180 Sum_probs=72.9
Q ss_pred hhHHHHHHHHhhcCCCChhHHHHHHHHHHHHhhcCchh---hH-hhHHHHHHHHhcCCChhHHHHHHHHHHHhCCC--Cc
Q 001839 9 ISPLVLVAVGKCARDPSVFVRKCAANALPKLHELRQEE---IT-SAIEEIVGILLNDRSPGVVGAAAAAFASICPN--NF 82 (1007)
Q Consensus 9 I~piv~~aIkk~~~D~SPYVRKtAA~AI~Kly~ldpe~---~~-~~LieiL~~LL~D~~p~VvgsAv~Af~EIcP~--rl 82 (1007)
...-++..+-.-++|++.-+|.-|+-++...|...|+. ++ ..++-+|..|..|.+..|+--|+.++.-+.|. .+
T Consensus 255 lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~ 334 (533)
T KOG2032|consen 255 LLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASND 334 (533)
T ss_pred cHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhc
Confidence 34456667778899999999999999999999998853 33 35777788888888899999999999888753 22
Q ss_pred cc---hHHHHHHHHHhCCCCChh---hHHHHHHHHHHhh
Q 001839 83 TL---IGRNYRNLCQILPDVEEW---GQILLIEILLRYV 115 (1007)
Q Consensus 83 dL---ihk~yrkLc~~L~d~dEW---gQv~iL~lL~rY~ 115 (1007)
++ +-...-++.+...+.+.= .-.++...|..|+
T Consensus 335 ~l~~~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~ 373 (533)
T KOG2032|consen 335 DLESYLLNIALRLRTLFDSEDDKMRAAAFVLFGALAKLA 373 (533)
T ss_pred chhhhchhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHc
Confidence 22 112333444444443332 2344555566665
No 127
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=49.70 E-value=1.2e+02 Score=28.54 Aligned_cols=32 Identities=13% Similarity=0.092 Sum_probs=19.2
Q ss_pred HHHHHHHhhccCChhHHHHHHHHHHHHHHhCc
Q 001839 314 VFKEFQDYIRDPDRRFAADTVAAIGLCARKLP 345 (1007)
Q Consensus 314 IL~EL~~Yv~d~D~~fv~~aI~AIG~~A~k~p 345 (1007)
.+++...++.|+..-++..++..++++..+-.
T Consensus 4 ~~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~ 35 (92)
T PF10363_consen 4 TLQEALSDLNDPLPPVRAHGLVLLRKLIESKS 35 (92)
T ss_pred HHHHHHHHccCCCcchHHHHHHHHHHHHHcCC
Confidence 34555556666666666666666666655544
No 128
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=49.48 E-value=1.2e+02 Score=33.98 Aligned_cols=121 Identities=13% Similarity=0.194 Sum_probs=74.8
Q ss_pred HHHHHHHHHHHhhcC-CCCchhhHHHHHHHHHHHCC----------Cccccccceee-ecc--------CCCHHHHHHHH
Q 001839 240 DVKRIVKPLLFILRS-SGASKYVVLCNIQVFAKALP----------HLFVPHYEDFF-VSS--------SDSYQSKALKL 299 (1007)
Q Consensus 240 ~l~~~~~pLv~LL~S-~~eiqyvvL~~I~~i~~~~p----------~lF~~~l~~Ff-v~~--------~Dp~~IK~lKL 299 (1007)
.+..++.+++.|+.. .+++|.-++..+..|....| +++.-+...++ |++ .+...+-....
T Consensus 116 ~~~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay 195 (282)
T PF10521_consen 116 HWPLIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAY 195 (282)
T ss_pred hhhHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHH
Confidence 456788899999975 68999999999988886444 22333322222 222 33345655666
Q ss_pred HHHHhcc----------CCCCHHHHHHH--HHHhhccCC---hhHHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Q 001839 300 EILSSIV----------TESSISSVFKE--FQDYIRDPD---RRFAADTVAAIGLCARKLPKMANTCVEGLLALIR 360 (1007)
Q Consensus 300 eIL~~La----------ne~Ni~~IL~E--L~~Yv~d~D---~~fv~~aI~AIG~~A~k~p~~a~~cl~~Ll~LLs 360 (1007)
..|..|+ ...+...+++| |..|..-.+ ..++....+.+..+...+.-.+-.+++-++.+|.
T Consensus 196 ~~L~~L~~~~~~~~~~~r~~~l~~~l~e~IL~~~~~~~~~~~~~l~~~ll~~l~~~i~~lGi~~~~hL~rii~~l~ 271 (282)
T PF10521_consen 196 PALLSLLKTQENDDSNPRSTWLDKILREGILSSMEHESSFSYPRLRTVLLQQLPPIIDELGISSVKHLQRIIPVLS 271 (282)
T ss_pred HHHHHHHHhhccCCcccchHHHHHHHHHHHhhhceeccccCchhHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 6666662 23345677777 444444444 6677777777777666666666666666666554
No 129
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=49.43 E-value=6.2e+02 Score=35.13 Aligned_cols=268 Identities=14% Similarity=0.142 Sum_probs=145.3
Q ss_pred HhhcCCCChhHHHHHHHHHHHHhhcCchh---hHhhHHHHHHHHhcCCChhHHHHHHHHHHHhCCCCcc----------c
Q 001839 18 GKCARDPSVFVRKCAANALPKLHELRQEE---ITSAIEEIVGILLNDRSPGVVGAAAAAFASICPNNFT----------L 84 (1007)
Q Consensus 18 kk~~~D~SPYVRKtAA~AI~Kly~ldpe~---~~~~LieiL~~LL~D~~p~VvgsAv~Af~EIcP~rld----------L 84 (1007)
.++.-.+-+-|||.+...+.|+-+-.+.. +.+.|+..+-...+.-.|.|+-=...-..++--+.+| .
T Consensus 1137 ~~gims~v~evr~~si~tl~dl~Kssg~~lkP~~~~LIp~ll~~~s~lE~~vLnYls~r~~~~e~ealDt~R~s~akssp 1216 (1702)
T KOG0915|consen 1137 DEGIMSKVNEVRRFSIGTLMDLAKSSGKELKPHFPKLIPLLLNAYSELEPQVLNYLSLRLINIETEALDTLRASAAKSSP 1216 (1702)
T ss_pred ccCcccchHHHHHHHHHHHHHHHHhchhhhcchhhHHHHHHHHHccccchHHHHHHHHhhhhhHHHHHHHHHHhhhcCCc
Confidence 46677888999999999999998876643 5567887777778888888885433333333222111 1
Q ss_pred hHHHHHHHHHhCCCCChhhHHHHHHHHHHhhhhcccccchhhhhhhhhcccCCCcccccccccccccCCCCCCccchhhh
Q 001839 85 IGRNYRNLCQILPDVEEWGQILLIEILLRYVVASHGLVKESIMSSLLCIESSHSEKDVFDVNVALEDNGIPSRTYDSELV 164 (1007)
Q Consensus 85 ihk~yrkLc~~L~d~dEWgQv~iL~lL~rY~r~~~~~~kp~~~f~~~~~~~~~~~~~~~~~~~~l~~q~~~~~~~~~~~~ 164 (1007)
......++++.+.+ .++.+|.-|.+.. ++-+. + +.+-+ .-...-
T Consensus 1217 mmeTi~~ci~~iD~------~vLeelip~l~el----~R~sV----------g-----------l~Tkv-----g~A~fI 1260 (1702)
T KOG0915|consen 1217 MMETINKCINYIDI------SVLEELIPRLTEL----VRGSV----------G-----------LGTKV-----GCASFI 1260 (1702)
T ss_pred HHHHHHHHHHhhhH------HHHHHHHHHHHHH----HhccC----------C-----------CCcch-----hHHHHH
Confidence 11223334433321 2333333333311 11000 0 00000 000000
Q ss_pred hhhccccccccccccccCCCcccccccccCccccCCCCChhHHHHHHhhcccccCCChHHHHHHHHHHHhcC---CHHHH
Q 001839 165 NLVSRSYIEGLGEYLTRSSDTNARSSDLNGARFTSGKTNDDVKLLLQCTSPLLWSHNSAVVLAAAGVHWIMS---PKEDV 241 (1007)
Q Consensus 165 ~~~~~~~~~~~de~~~~~~~~~~~~~~~~~~~~~~~~~D~D~~lLL~~~~pLLqS~NsAVVlaaa~l~~~la---p~~~l 241 (1007)
..+..+ ...+|-|-...||+++.|-+..||++|--+.+...-|++ .++..
T Consensus 1261 ~~L~~r---------------------------~~~emtP~sgKll~al~~g~~dRNesv~kafAsAmG~L~k~Ss~dq~ 1313 (1702)
T KOG0915|consen 1261 SLLVQR---------------------------LGSEMTPYSGKLLRALFPGAKDRNESVRKAFASAMGYLAKFSSPDQM 1313 (1702)
T ss_pred HHHHHH---------------------------hccccCcchhHHHHHHhhccccccHHHHHHHHHHHHHHHhcCChHHH
Confidence 001110 122466677899999999999999999999999877764 34556
Q ss_pred HHHHHHHHHh-hcCCCCchhhHHHHHHHHHHHCCCccccccc-----eeeeccCCCHHHHHHHHHHHHhccCC--CCHH-
Q 001839 242 KRIVKPLLFI-LRSSGASKYVVLCNIQVFAKALPHLFVPHYE-----DFFVSSSDSYQSKALKLEILSSIVTE--SSIS- 312 (1007)
Q Consensus 242 ~~~~~pLv~L-L~S~~eiqyvvL~~I~~i~~~~p~lF~~~l~-----~Ffv~~~Dp~~IK~lKLeIL~~Lane--~Ni~- 312 (1007)
++.+.-++.. +...+-.+-++...+..|....+++|..|.. .|+.+..+......+==|+..-++.- ..+.
T Consensus 1314 qKLie~~l~~~l~k~es~~siscatis~Ian~s~e~Lkn~asaILPLiFLa~~ee~Ka~q~Lw~dvW~e~vsggagtvrl 1393 (1702)
T KOG0915|consen 1314 QKLIETLLADLLGKDESLKSISCATISNIANYSQEMLKNYASAILPLIFLAMHEEEKANQELWNDVWAELVSGGAGTVRL 1393 (1702)
T ss_pred HHHHHHHHHHHhccCCCccchhHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCCCcchhhh
Confidence 6666666544 4333323345555555477777777776643 24444444333444444455544432 2222
Q ss_pred ---HHHHHHHHhhccCC-hhHHHHHHHHHHHHHHhCcccH
Q 001839 313 ---SVFKEFQDYIRDPD-RRFAADTVAAIGLCARKLPKMA 348 (1007)
Q Consensus 313 ---~IL~EL~~Yv~d~D-~~fv~~aI~AIG~~A~k~p~~a 348 (1007)
.||.-+-.-+.+.+ -.+.+.++++|..+|......+
T Consensus 1394 ~~~eiLn~iceni~nn~~w~lr~q~Akai~~~a~~~sss~ 1433 (1702)
T KOG0915|consen 1394 YLLEILNLICENITNNESWKLRKQAAKAIRVIAEGLSSSA 1433 (1702)
T ss_pred hHHHHHHHHHHHhccchHHHHHHHHHHHHHHHcccccccC
Confidence 23333333444433 2566777888877777765544
No 130
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=48.77 E-value=44 Score=34.29 Aligned_cols=93 Identities=19% Similarity=0.174 Sum_probs=62.7
Q ss_pred CCChhHHHHHHHHHHHHhhcCchhhHhhHHHHHHHHhcCCChhHHHHHHHHHHHhCCCCccchHHH------HHHHHHhC
Q 001839 23 DPSVFVRKCAANALPKLHELRQEEITSAIEEIVGILLNDRSPGVVGAAAAAFASICPNNFTLIGRN------YRNLCQIL 96 (1007)
Q Consensus 23 D~SPYVRKtAA~AI~Kly~ldpe~~~~~LieiL~~LL~D~~p~VvgsAv~Af~EIcP~rldLihk~------yrkLc~~L 96 (1007)
...+-||-.|+.++.|+++..++.-.+.+.+.+..++.+.+..-...|+.++..+.|--.++-... ...|..+.
T Consensus 16 ~~~~~~r~~a~v~l~k~l~~~~~~~~~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~l~~~eg~~~~l~~~~ 95 (157)
T PF11701_consen 16 RQPEEVRSHALVILSKLLDAAREEFKEKISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSELFLSEGFLESLLPLA 95 (157)
T ss_dssp TTSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHHHCCTTTHHHHHHHHH
T ss_pred CCCHhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHHHHhhhhHHHHHHHHH
Confidence 567889999999999998766655666788888888887666677788888888888765432211 12233222
Q ss_pred C--CCChhhHHHHHHHHHHhh
Q 001839 97 P--DVEEWGQILLIEILLRYV 115 (1007)
Q Consensus 97 ~--d~dEWgQv~iL~lL~rY~ 115 (1007)
. .-++=-|..++++|..=|
T Consensus 96 ~~~~~~~~~~~~~lell~aAc 116 (157)
T PF11701_consen 96 SRKSKDRKVQKAALELLSAAC 116 (157)
T ss_dssp H-CTS-HHHHHHHHHHHHHHT
T ss_pred hcccCCHHHHHHHHHHHHHHH
Confidence 2 234445777777776544
No 131
>PF06483 ChiC: Chitinase C; InterPro: IPR009470 This ~170 aa region is found at the C-terminal to the catalytic domain (IPR001223 from INTERPRO) found in members of glycoside hydrolase family 18.
Probab=48.44 E-value=55 Score=34.62 Aligned_cols=112 Identities=19% Similarity=0.260 Sum_probs=66.4
Q ss_pred CCCeeEEEEecC-----CCCCCCCCeEEEEEEEEeCCCCce---eeeEeecccc----chhhhhhhhhhhccccccccCC
Q 001839 735 GNGLKVYYSFSS-----EASTISPQLVCLETFFENCSSETM---SEVTLVDEES----HKALDLADLTLATTASSLTSQS 802 (1007)
Q Consensus 735 g~GL~v~Y~F~r-----~p~~~s~~mv~v~l~f~N~s~~~i---~~i~i~~~~~----~~~~~g~~~~~~~~~~~~~~~~ 802 (1007)
..=|.|.+.|.- +-.++.|+ |.|+|+|+.+| .+|+..=..+ .|-+.|+..+..+..|+..+ .
T Consensus 33 ~~~ldv~v~~~gf~~GD~NYPI~Pk-----l~iTNns~~~iPGGt~~~FD~ptSa~~~~kdqSG~g~~vi~sght~~g-~ 106 (180)
T PF06483_consen 33 TEALDVSVSFTGFKLGDSNYPINPK-----LTITNNSGQTIPGGTEFEFDYPTSAPDNAKDQSGFGLKVISSGHTAAG-N 106 (180)
T ss_pred CceEEEEEEeCCcccCCCCCCcCCc-----EEEEcCCCcccCCccEEEEccccCCccccccccCCcEEEEecCCcccC-C
Confidence 344666666663 44666775 57999999999 3444332111 12234433332222121000 0
Q ss_pred CCC----Cccc----CCcccccCCCCeeEEEEEEEcCCCCccceEEEEEcCCeeeeEEe
Q 001839 803 DLP----TLVP----MEEITSLEPGQTMKRILEVRFHHHLLPLKLALHCNGKKLPVKLR 853 (1007)
Q Consensus 803 ~~~----~~~~----f~~i~~l~p~~~~~~~~~idF~~~~~~~~~~l~~~~~~~~v~i~ 853 (1007)
++- ..|- .+.-.+|+||++++..|-.--+=+. |.+|.+..++..|-.+-.
T Consensus 107 NiGGL~gdfHrvs~tlp~wqslapG~s~~~~~~YyLPiSg-PsN~tv~~~g~~Yal~~d 164 (180)
T PF06483_consen 107 NIGGLKGDFHRVSFTLPAWQSLAPGASVELDMVYYLPISG-PSNFTVNIGGKTYALKFD 164 (180)
T ss_pred cccccCCceEEEEEECCCccccCCCCEEEEeEEEEeccCC-CceEEEEECCEEEEEecc
Confidence 000 1111 3566799999999999888888777 999999999999866543
No 132
>smart00567 EZ_HEAT E-Z type HEAT repeats. Present in subunits of cyanobacterial phycocyanin lyase, and other proteins. Probable scaffolding role.
Probab=47.50 E-value=26 Score=25.55 Aligned_cols=29 Identities=31% Similarity=0.169 Sum_probs=19.5
Q ss_pred hhHHHHHHHHHHHHhhcCchhhHhhHHHHHHHHhcC
Q 001839 26 VFVRKCAANALPKLHELRQEEITSAIEEIVGILLND 61 (1007)
Q Consensus 26 PYVRKtAA~AI~Kly~ldpe~~~~~LieiL~~LL~D 61 (1007)
+.||+.||.++.++ -+| .-++.|..+|.|
T Consensus 1 ~~vR~~aa~aLg~~--~~~-----~a~~~L~~~l~d 29 (30)
T smart00567 1 PLVRHEAAFALGQL--GDE-----EAVPALIKALED 29 (30)
T ss_pred CHHHHHHHHHHHHc--CCH-----hHHHHHHHHhcC
Confidence 47999999999987 223 223445566665
No 133
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=47.36 E-value=33 Score=38.48 Aligned_cols=23 Identities=22% Similarity=0.219 Sum_probs=11.5
Q ss_pred HHHHHHHhcCCChhHHHHHHHHH
Q 001839 52 EEIVGILLNDRSPGVVGAAAAAF 74 (1007)
Q Consensus 52 ieiL~~LL~D~~p~VvgsAv~Af 74 (1007)
+++|++.+.|..+.|.-++..||
T Consensus 253 ~~vL~e~~~D~~~vv~esc~val 275 (289)
T KOG0567|consen 253 VEVLKEYLGDEERVVRESCEVAL 275 (289)
T ss_pred HHHHHHHcCCcHHHHHHHHHHHH
Confidence 34445555555555555555444
No 134
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=46.84 E-value=1.8e+02 Score=37.85 Aligned_cols=146 Identities=12% Similarity=0.233 Sum_probs=95.3
Q ss_pred CCCHHHHHHHHHHhhccCChhHHHHHHHHHHHHHHhCccc--HHHHHHHHHHHHHhhhccccccCCCCCccchhhHHHH-
Q 001839 308 ESSISSVFKEFQDYIRDPDRRFAADTVAAIGLCARKLPKM--ANTCVEGLLALIRQELLTSDIESGNGEADVLIQSIIS- 384 (1007)
Q Consensus 308 e~Ni~~IL~EL~~Yv~d~D~~fv~~aI~AIG~~A~k~p~~--a~~cl~~Ll~LLs~~~~~s~~~~~~~~~~vV~EsVvv- 384 (1007)
.-.+-++++++.+|..+.+...++++|+.+...+..+|+. ...=+..|+.+-... -.+...+.+++..
T Consensus 38 s~tl~dlV~sl~~yl~s~n~~~Rakai~llsqvl~~~p~d~L~k~EVs~Ll~fyq~r---------ldd~~la~~~~l~~ 108 (1030)
T KOG1967|consen 38 STTLLDLVTSLGTYLTSDNPEERAKAIELLSQVLSEFPKDLLQKKEVSVLLQFYQNR---------LDDSALAKEAVLGG 108 (1030)
T ss_pred cccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccHhhhhHHHHHHHHHHHHhH---------HHHhhhhHHHHHHH
Confidence 4467899999999999999999999999999999999873 234456666665432 1133456666665
Q ss_pred HHHHHH--cCCchHHH-HHHh-hhccCchh--------hHHhhhhhccccccCCCCccccHHHHHHH-HHHhhccCcHHH
Q 001839 385 IKSIIK--QDPSCHEK-LFRS-LDSIKVPE--------ARVMIIWMVGEYSSVGVKIPRMLTTVLKY-LAWCFKSEAVET 451 (1007)
Q Consensus 385 Ik~Llq--~~P~~~~~-L~~~-ld~I~~p~--------ArAsIIWLLGEY~~~~e~ip~ia~DvLR~-l~k~F~~E~~~V 451 (1007)
++.++- .-|+.... ++|. ++..+.+. +-.-+.|++-.|-.. +-...+|++=. +.+.+..|-+.=
T Consensus 109 l~aL~~~~~~p~~~ivsllkalfq~~~vqs~aq~~R~~~~~Il~~~l~~~~~~---l~s~~~D~~~~~f~~~~~GEKDPR 185 (1030)
T KOG1967|consen 109 LKALILMSKLPDNFIVSLLKALFQEVQVQSLAQKERLLQYEILEWFLDYRLEF---LKSLGPDFLFTAFCKVVDGEKDPR 185 (1030)
T ss_pred HHHHHHhhcCCchHHHHHHHHHHHhcchHHHHHHHHhhHHHHHHHHHHHHHHH---HhcccchHHHHHHHHHhcCCCCch
Confidence 666553 34554433 6663 34444432 111235888776532 22234666655 888888887776
Q ss_pred HHHHHHHHHHHhhh
Q 001839 452 KLQILNTTIKVLLC 465 (1007)
Q Consensus 452 KlqILtlaaKL~~~ 465 (1007)
-+++.-.+.|....
T Consensus 186 nLml~F~l~~~i~s 199 (1030)
T KOG1967|consen 186 NLMLVFSLVKEISS 199 (1030)
T ss_pred hhHHHHHHHHHHhh
Confidence 67777777777665
No 135
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=46.29 E-value=4.7e+02 Score=35.19 Aligned_cols=209 Identities=12% Similarity=0.069 Sum_probs=120.4
Q ss_pred HHHHHHHHHHHhhcCCCCc-h---hhHHHHHHHHHHHCCC---cccc----ccceeeeccCCCHHHHHHHHHHHHhccCC
Q 001839 240 DVKRIVKPLLFILRSSGAS-K---YVVLCNIQVFAKALPH---LFVP----HYEDFFVSSSDSYQSKALKLEILSSIVTE 308 (1007)
Q Consensus 240 ~l~~~~~pLv~LL~S~~ei-q---yvvL~~I~~i~~~~p~---lF~~----~l~~Ffv~~~Dp~~IK~lKLeIL~~Lane 308 (1007)
.+..+++|.-+|+.+.+.. . ..+|.+|.-.+.++-+ -|.. .++.| .+....--+.+..++++
T Consensus 193 flsl~~~~~yrllEn~~~~k~~~t~~ai~~ilg~s~k~~~~~~t~~~rilq~l~~f-------ehl~~~~ad~v~l~~sk 265 (1251)
T KOG0414|consen 193 FLSLIVDPIYRLLENEHVNKNSSTKDAIFRILGSSVKRYNQCSTFASRILQNLRYF-------EHLAVHVADAVTLVRSK 265 (1251)
T ss_pred HHHHHHHHHHHHhcccccccchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHh
Confidence 4778889999999764221 1 2334444443332221 1111 01111 12223334567777788
Q ss_pred CCHHHHHHHHHHhhccCC-----hhHHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhccccccCCCCCccchhhHHH
Q 001839 309 SSISSVFKEFQDYIRDPD-----RRFAADTVAAIGLCARKLPKMANTCVEGLLALIRQELLTSDIESGNGEADVLIQSII 383 (1007)
Q Consensus 309 ~Ni~~IL~EL~~Yv~d~D-----~~fv~~aI~AIG~~A~k~p~~a~~cl~~Ll~LLs~~~~~s~~~~~~~~~~vV~EsVv 383 (1007)
-|...|+..+..-+.+.. .......-.-+..++.+.|...-+-+..|+.||..+ .+-+.-+|+
T Consensus 266 y~~~sl~~~Iir~I~~~~~~~~d~~g~k~v~~fL~elS~~~P~l~~~~l~~lv~lld~e------------s~~lRnavl 333 (1251)
T KOG0414|consen 266 YGSVSLAGNIIRSIGSPEPNEKDCAGPKIVGNFLVELSERVPKLMLRQLTLLVDLLDSE------------SYTLRNAVL 333 (1251)
T ss_pred cccHHHHHHHHHHhcccchhcccccchhhHHHHHHHHHHHhHHHHHHHHHHHHHhcCCc------------hHHHHHHHH
Confidence 888888887777665432 233334444556788899999888899999877532 233333443
Q ss_pred HHH-HHHH---cCCchH--HH---------HHHhhhccCchhhHHhhhhhccccccCCCCccccHHHHHHHHHHhhccCc
Q 001839 384 SIK-SIIK---QDPSCH--EK---------LFRSLDSIKVPEARVMIIWMVGEYSSVGVKIPRMLTTVLKYLAWCFKSEA 448 (1007)
Q Consensus 384 vIk-~Llq---~~P~~~--~~---------L~~~ld~I~~p~ArAsIIWLLGEY~~~~e~ip~ia~DvLR~l~k~F~~E~ 448 (1007)
.++ +++. ++++.- .+ |.+.+-++. +-.|..++-+.-.-++....-+....+|++..+.+..+-+
T Consensus 334 ei~~n~V~~~l~d~e~~~~sk~~r~~~le~l~erl~Dvs-a~vRskVLqv~~~l~~~~s~p~~~~~eV~~la~grl~DkS 412 (1251)
T KOG0414|consen 334 EICANLVASELRDEELEEMSKSLRDELLELLRERLLDVS-AYVRSKVLQVFRRLFQQHSIPLGSRTEVLELAIGRLEDKS 412 (1251)
T ss_pred HHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHHHhhccc-HHHHHHHHHHHHHHHHccCCCccHHHHHHHHHhccccccc
Confidence 222 2222 233311 11 222333332 6667777655554443222223446788888888888889
Q ss_pred HHHHHHHHHHHHHHhhhcCC
Q 001839 449 VETKLQILNTTIKVLLCAKG 468 (1007)
Q Consensus 449 ~~VKlqILtlaaKL~~~~p~ 468 (1007)
..||-..+.+..++..++|-
T Consensus 413 slVRk~Ai~Ll~~~L~~~Pf 432 (1251)
T KOG0414|consen 413 SLVRKNAIQLLSSLLDRHPF 432 (1251)
T ss_pred HHHHHHHHHHHHHHHhcCCc
Confidence 99999999999999999984
No 136
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=46.12 E-value=74 Score=39.15 Aligned_cols=54 Identities=11% Similarity=0.044 Sum_probs=34.7
Q ss_pred chhhHHhhhhhccccccCCCCccccHHHHHHHHHHhhccCcHHHHHHHHHHHHHHhhhc
Q 001839 408 VPEARVMIIWMVGEYSSVGVKIPRMLTTVLKYLAWCFKSEAVETKLQILNTTIKVLLCA 466 (1007)
Q Consensus 408 ~p~ArAsIIWLLGEY~~~~e~ip~ia~DvLR~l~k~F~~E~~~VKlqILtlaaKL~~~~ 466 (1007)
++..|+.....+|=.|.- .--..+-|+|.-+.+ +-.+.||...+-+.+-+..++
T Consensus 599 N~hVR~g~AvaLGiacag--~G~~~a~diL~~L~~---D~~dfVRQ~AmIa~~mIl~Q~ 652 (926)
T COG5116 599 NFHVRAGVAVALGIACAG--TGDKVATDILEALMY---DTNDFVRQSAMIAVGMILMQC 652 (926)
T ss_pred chhhhhhhHHHhhhhhcC--CccHHHHHHHHHHhh---CcHHHHHHHHHHHHHHHHhhc
Confidence 466688888888988742 122457788887764 334567776666665555544
No 137
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=45.65 E-value=2.1e+02 Score=29.09 Aligned_cols=73 Identities=18% Similarity=0.135 Sum_probs=50.8
Q ss_pred HHHHHhhcccccCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH-hhcCCCCchhhHHHHHHHHHHHCCCcccccc
Q 001839 207 KLLLQCTSPLLWSHNSAVVLAAAGVHWIMSPKEDVKRIVKPLLF-ILRSSGASKYVVLCNIQVFAKALPHLFVPHY 281 (1007)
Q Consensus 207 ~lLL~~~~pLLqS~NsAVVlaaa~l~~~lap~~~l~~~~~pLv~-LL~S~~eiqyvvL~~I~~i~~~~p~lF~~~l 281 (1007)
.++-+++.+.+..-+-+.+++.+-.+-. . ...-+.++++|.+ |-..++++|+.+|..+..+++.+...|...+
T Consensus 7 ~~I~kATs~~l~~~dw~~ileicD~In~-~-~~~~k~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~ev 80 (142)
T cd03569 7 ELIEKATSELLGEPDLASILEICDMIRS-K-DVQPKYAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEV 80 (142)
T ss_pred HHHHHHcCcccCccCHHHHHHHHHHHhC-C-CCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHH
Confidence 3556677777777788888887766532 1 1223456667754 4456799999999999999998887776554
No 138
>KOG2051 consensus Nonsense-mediated mRNA decay 2 protein [RNA processing and modification]
Probab=45.47 E-value=9e+02 Score=32.38 Aligned_cols=45 Identities=13% Similarity=0.140 Sum_probs=25.0
Q ss_pred HHHHHHhhccCChhHHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Q 001839 315 FKEFQDYIRDPDRRFAADTVAAIGLCARKLPKMANTCVEGLLALIR 360 (1007)
Q Consensus 315 L~EL~~Yv~d~D~~fv~~aI~AIG~~A~k~p~~a~~cl~~Ll~LLs 360 (1007)
|+-|..|.+..+.+++......-|+-=.+.|+..- -++.+|+.+.
T Consensus 547 Lk~ll~dF~~hnIEm~c~lLE~~GrfLlr~pEt~l-rM~~~Le~i~ 591 (1128)
T KOG2051|consen 547 LKMLLNDFTHHNIEMACVLLESCGRFLLRSPETKL-RMRVFLEQIK 591 (1128)
T ss_pred HHHHHHhcccccHHHHHHHHHhcchhhhcChhHHH-HHHHHHHHHH
Confidence 33444445556666776666666666666665543 2444444443
No 139
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=43.94 E-value=43 Score=35.66 Aligned_cols=50 Identities=22% Similarity=0.189 Sum_probs=39.0
Q ss_pred HhhHHHHHHHHhcCCChhHHHHHHHHHHHh---CCCCccchHHHHHHHHHhCC
Q 001839 48 TSAIEEIVGILLNDRSPGVVGAAAAAFASI---CPNNFTLIGRNYRNLCQILP 97 (1007)
Q Consensus 48 ~~~LieiL~~LL~D~~p~VvgsAv~Af~EI---cP~rldLihk~yrkLc~~L~ 97 (1007)
.++|+--|+.-|+-+++.|+.+++.++..+ .+---+-+-++||+|+..|.
T Consensus 78 lPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~vG~aLvPyyrqLLp~ln 130 (183)
T PF10274_consen 78 LPQLIIPLKRALNTRDPEVFCATLKALQQLVTSSDMVGEALVPYYRQLLPVLN 130 (183)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHH
Confidence 457777788899999999999999999988 44333557789999988554
No 140
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=43.88 E-value=3e+02 Score=32.66 Aligned_cols=178 Identities=16% Similarity=0.186 Sum_probs=88.7
Q ss_pred HHHHHHHHHHHHhccCCC----CHHHHHHHHHHhh-ccCChhHHHHHHHHHHH----HHHhCcccHHHHHHHHHHHHHhh
Q 001839 292 YQSKALKLEILSSIVTES----SISSVFKEFQDYI-RDPDRRFAADTVAAIGL----CARKLPKMANTCVEGLLALIRQE 362 (1007)
Q Consensus 292 ~~IK~lKLeIL~~Lane~----Ni~~IL~EL~~Yv-~d~D~~fv~~aI~AIG~----~A~k~p~~a~~cl~~Ll~LLs~~ 362 (1007)
..++.--+++|..|+|.- -+..+++.+.... ...+..-...++..+.- +..|..+.+...++.|+.+|+..
T Consensus 204 ~~~~~~~~~~la~LvNK~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~~~~~~~~~~L~~lL~~~ 283 (415)
T PF12460_consen 204 EFSRLAALQLLASLVNKWPDDDDLDEFLDSLLQSISSSEDSELRPQALEILIWITKALVMRGHPLATELLDKLLELLSSP 283 (415)
T ss_pred hHHHHHHHHHHHHHHcCCCChhhHHHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHhCCh
Confidence 457777788888888872 2344555554444 23333334444443322 23355566667788888888632
Q ss_pred hccccccCCCCCccchhhHHHHHHHHHHcCCch-----H-------HH------HHHhhhccCc------hhhHHhhhhh
Q 001839 363 LLTSDIESGNGEADVLIQSIISIKSIIKQDPSC-----H-------EK------LFRSLDSIKV------PEARVMIIWM 418 (1007)
Q Consensus 363 ~~~s~~~~~~~~~~vV~EsVvvIk~Llq~~P~~-----~-------~~------L~~~ld~I~~------p~ArAsIIWL 418 (1007)
. -...++++ +.-|+.-.++. | +. +-++++.... +....++.-+
T Consensus 284 ~----------~g~~aA~~---f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~~~k~~yL~ALs~l 350 (415)
T PF12460_consen 284 E----------LGQQAAKA---FGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADDEIKSNYLTALSHL 350 (415)
T ss_pred h----------hHHHHHHH---HhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHH
Confidence 0 00123332 22222221111 1 10 1122222221 1122233344
Q ss_pred ccccccCCCCccccHHHHHHHHHHhhccCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHH
Q 001839 419 VGEYSSVGVKIPRMLTTVLKYLAWCFKSEAVETKLQILNTTIKVLLCAKGGDMWTITRLFSYLLEL 484 (1007)
Q Consensus 419 LGEY~~~~e~ip~ia~DvLR~l~k~F~~E~~~VKlqILtlaaKL~~~~p~e~~~~i~~L~qyvLeL 484 (1007)
+..-...+ ..++ ++.++..+.+.....+..++...|.+..-+.-..|+-..+-+..++-.++++
T Consensus 351 l~~vP~~v-l~~~-l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~~~~i~~hl~sLI~~LL~l 414 (415)
T PF12460_consen 351 LKNVPKSV-LLPE-LPTLLPLLLQSLSLPDADVLLSSLETLKMILEEAPELISEHLSSLIPRLLKL 414 (415)
T ss_pred HhhCCHHH-HHHH-HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHhc
Confidence 44211100 1233 4677888888888888889999999887776666543233344555555543
No 141
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=42.97 E-value=2.6e+02 Score=28.44 Aligned_cols=72 Identities=15% Similarity=0.098 Sum_probs=54.3
Q ss_pred HHHHhhcccccCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhc-CCCCchhhHHHHHHHHHHHCCCcccccc
Q 001839 208 LLLQCTSPLLWSHNSAVVLAAAGVHWIMSPKEDVKRIVKPLLFILR-SSGASKYVVLCNIQVFAKALPHLFVPHY 281 (1007)
Q Consensus 208 lLL~~~~pLLqS~NsAVVlaaa~l~~~lap~~~l~~~~~pLv~LL~-S~~eiqyvvL~~I~~i~~~~p~lF~~~l 281 (1007)
++-+++.|.+..-|-+.+++.+-.+- -.| ..-+.++++|.+-|. .++++++.+|..+-.+++.+...|...+
T Consensus 5 ~iekAT~~~l~~~dw~~ileicD~In-~~~-~~~k~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~ev 77 (139)
T cd03567 5 WLNKATNPSNREEDWEAIQAFCEQIN-KEP-EGPQLAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEV 77 (139)
T ss_pred HHHHHcCccCCCCCHHHHHHHHHHHH-cCC-ccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHH
Confidence 56688888999999999999887653 233 233556777765554 4689999999999999999988776654
No 142
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=42.70 E-value=77 Score=41.57 Aligned_cols=80 Identities=20% Similarity=0.175 Sum_probs=61.3
Q ss_pred cchhhhHHHHHHHHhhcCCCChhHHHHHHHHHHHHhhcCchhhHhhHHHHHHHHhcCC-ChhHHHHHHHHHHHhCCCCcc
Q 001839 5 RLHVISPLVLVAVGKCARDPSVFVRKCAANALPKLHELRQEEITSAIEEIVGILLNDR-SPGVVGAAAAAFASICPNNFT 83 (1007)
Q Consensus 5 RVp~I~piv~~aIkk~~~D~SPYVRKtAA~AI~Kly~ldpe~~~~~LieiL~~LL~D~-~p~VvgsAv~Af~EIcP~rld 83 (1007)
-||+|++.++.-+-.+++|..-.||=.||-++.|+..-.|-+-.++.+.-+-.+++-- ++.+-=.|..||.|+--..+.
T Consensus 334 dv~eivE~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~~Lad~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlL 413 (1133)
T KOG1943|consen 334 DVPEIVEFVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLPPELADQVIGSVIDLFNPAEDDSAWHGACLALAELALRGLL 413 (1133)
T ss_pred ccHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHccCcHHHHHHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCc
Confidence 3899999999999999999999999999999999999888554454443333366522 356666888899998654443
Q ss_pred c
Q 001839 84 L 84 (1007)
Q Consensus 84 L 84 (1007)
+
T Consensus 414 l 414 (1133)
T KOG1943|consen 414 L 414 (1133)
T ss_pred c
Confidence 3
No 143
>KOG2051 consensus Nonsense-mediated mRNA decay 2 protein [RNA processing and modification]
Probab=42.07 E-value=5.2e+02 Score=34.47 Aligned_cols=175 Identities=14% Similarity=0.120 Sum_probs=105.9
Q ss_pred HHHHHHHHHHHhccCCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhccccccCCC
Q 001839 293 QSKALKLEILSSIVTESSISSVFKEFQDYIRDPDRRFAADTVAAIGLCARKLPKMANTCVEGLLALIRQELLTSDIESGN 372 (1007)
Q Consensus 293 ~IK~lKLeIL~~Lane~Ni~~IL~EL~~Yv~d~D~~fv~~aI~AIG~~A~k~p~~a~~cl~~Ll~LLs~~~~~s~~~~~~ 372 (1007)
+|-...++-..+|-|..|-..+++-|..-.+ ..-+++.--+|-++.+....|.++...++.|..=
T Consensus 442 liD~~a~ef~~nlNtKa~RkrLvKal~~vpr-t~ldllPyYsRlVAtl~~~M~dvat~lv~~L~~e-------------- 506 (1128)
T KOG2051|consen 442 LIDQAAIEFCSNLNTKANRKRLVKALFVVPR-TRLDLLPYYSRLVATLSKCMPDVATELVTMLRKE-------------- 506 (1128)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHhhhcccc-hhhhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHH--------------
Confidence 5677777777777777777777775543322 2334455555555555555555555443333221
Q ss_pred CCccchhhHHHHHHHHHHcCCchHHHHHHhhhccCchhhHHhhhhhccccccCCCCccccHHHHHHHHHHhhccCcHHHH
Q 001839 373 GEADVLIQSIISIKSIIKQDPSCHEKLFRSLDSIKVPEARVMIIWMVGEYSSVGVKIPRMLTTVLKYLAWCFKSEAVETK 452 (1007)
Q Consensus 373 ~~~~vV~EsVvvIk~Llq~~P~~~~~L~~~ld~I~~p~ArAsIIWLLGEY~~~~e~ip~ia~DvLR~l~k~F~~E~~~VK 452 (1007)
++..+++. +. .+-..+-.++-+|||-|...-.-+..+-.+|+.++.-|..-.-++=
T Consensus 507 ------------Fr~~~hkK-----------~q-~~ietk~~~VrfIsEL~KF~lv~~~~if~cLk~ll~dF~~hnIEm~ 562 (1128)
T KOG2051|consen 507 ------------FRSHLHKK-----------AQ-INIETKLKIVRFISELCKFQLVPKFEIFSCLKMLLNDFTHHNIEMA 562 (1128)
T ss_pred ------------HHHHHhhh-----------hh-hhhhhhhhhhhhHHhhhhhCccChHHHHHHHHHHHHhcccccHHHH
Confidence 22222221 00 1123355667888888765322233355678888888888888999
Q ss_pred HHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHccCCChhHHhHHHHHHHHccCCC
Q 001839 453 LQILNTTIKVLLCAKGGDMWTITRLFSYLLELAECDLNYDVRDRARFFKKLFSHNL 508 (1007)
Q Consensus 453 lqILtlaaKL~~~~p~e~~~~i~~L~qyvLeLak~D~n~DVRDRArfy~~LL~~~~ 508 (1007)
+-+|..+.+.+++.|.. ..++..+++.+.. .+.+..-|-|+-+..=.++..+.+
T Consensus 563 c~lLE~~GrfLlr~pEt-~lrM~~~Le~i~r-kK~a~~lDsr~~~~iENay~~~~P 616 (1128)
T KOG2051|consen 563 CVLLESCGRFLLRSPET-KLRMRVFLEQIKR-KKRASALDSRQATLIENAYYLCNP 616 (1128)
T ss_pred HHHHHhcchhhhcChhH-HHHHHHHHHHHHH-HHHHhhhchHHHHHHHHhHHhccC
Confidence 99999999999999853 3356667776553 355667788887766555444443
No 144
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=41.43 E-value=1.6e+02 Score=33.17 Aligned_cols=73 Identities=22% Similarity=0.116 Sum_probs=56.8
Q ss_pred hhhhHHHHHHHHhhcCCCChhHHHHHHHHHHHHhhcCchhh---------HhhHHHHHHHHhc--------CCChhHHHH
Q 001839 7 HVISPLVLVAVGKCARDPSVFVRKCAANALPKLHELRQEEI---------TSAIEEIVGILLN--------DRSPGVVGA 69 (1007)
Q Consensus 7 p~I~piv~~aIkk~~~D~SPYVRKtAA~AI~Kly~ldpe~~---------~~~LieiL~~LL~--------D~~p~Vvgs 69 (1007)
..-.|.++++|-..+.|.+|.+|-.++.++..+-.--|... .+.+.+.+..+|. |.+..++..
T Consensus 114 ~~~~~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ 193 (282)
T PF10521_consen 114 SQHWPLIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQA 193 (282)
T ss_pred HHhhhHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHH
Confidence 45678899999999999999999999999999887544233 3445566666776 778888888
Q ss_pred HHHHHHHhCC
Q 001839 70 AAAAFASICP 79 (1007)
Q Consensus 70 Av~Af~EIcP 79 (1007)
|.-++..+++
T Consensus 194 ay~~L~~L~~ 203 (282)
T PF10521_consen 194 AYPALLSLLK 203 (282)
T ss_pred HHHHHHHHHH
Confidence 8888887743
No 145
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=41.30 E-value=4.6e+02 Score=28.63 Aligned_cols=123 Identities=16% Similarity=0.119 Sum_probs=77.1
Q ss_pred cccCCChHHHHHHHHHHHhcCCHH--HHHHHHHHHHHhhcC-CCCchhhHHHHHHHHHHHCCCccccccceeeec-----
Q 001839 216 LLWSHNSAVVLAAAGVHWIMSPKE--DVKRIVKPLLFILRS-SGASKYVVLCNIQVFAKALPHLFVPHYEDFFVS----- 287 (1007)
Q Consensus 216 LLqS~NsAVVlaaa~l~~~lap~~--~l~~~~~pLv~LL~S-~~eiqyvvL~~I~~i~~~~p~lF~~~l~~Ffv~----- 287 (1007)
+-+..++.++....++...++... ....+.+.|..|... ..+.+|+.++-+..+-..++..| ++++.|...
T Consensus 9 l~~~~~~~~~~~~L~~L~~l~~~~~~~~~~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~f-~~L~~~L~~~~~r~ 87 (234)
T PF12530_consen 9 LGKISDPELQLPLLEALPSLACHKNVCVPPVLQTLVSLVEQGSLELRYVALRLLTLLWKANDRHF-PFLQPLLLLLILRI 87 (234)
T ss_pred hcCCCChHHHHHHHHHHHHHhccCccchhHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhCchHH-HHHHHHHHHHHhhc
Confidence 556778888888888887776433 344566677777765 45678999999999999988887 666544333
Q ss_pred ----cCCCH------HHHHHHHHHHHhccCCCCHHHHHHHHHHhh-ccCChhHHHHHHHHHHHHH
Q 001839 288 ----SSDSY------QSKALKLEILSSIVTESSISSVFKEFQDYI-RDPDRRFAADTVAAIGLCA 341 (1007)
Q Consensus 288 ----~~Dp~------~IK~lKLeIL~~Lane~Ni~~IL~EL~~Yv-~d~D~~fv~~aI~AIG~~A 341 (1007)
.++.. .++.---+|-.. .++.-..++..+...+ .+.+...++-++++|..+-
T Consensus 88 ~~~~~~~~~~~~~~i~~a~s~~~ic~~--~p~~g~~ll~~ls~~L~~~~~~~~~alale~l~~Lc 150 (234)
T PF12530_consen 88 PSSFSSKDEFWECLISIAASIRDICCS--RPDHGVDLLPLLSGCLNQSCDEVAQALALEALAPLC 150 (234)
T ss_pred ccccCCCcchHHHHHHHHHHHHHHHHh--ChhhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHH
Confidence 11111 011111112221 2446677888888888 5666666677777776554
No 146
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=41.21 E-value=30 Score=33.79 Aligned_cols=34 Identities=29% Similarity=0.327 Sum_probs=29.4
Q ss_pred HhhHHHHHHHHhcCCChhHHHHHHHHHHHhCCCC
Q 001839 48 TSAIEEIVGILLNDRSPGVVGAAAAAFASICPNN 81 (1007)
Q Consensus 48 ~~~LieiL~~LL~D~~p~VvgsAv~Af~EIcP~r 81 (1007)
....+++|-.-|.|.++.|+..|+.+|.|.|++.
T Consensus 6 ~~w~i~lLv~QL~D~~~~V~~~A~~iL~e~c~~~ 39 (115)
T PF14663_consen 6 EDWGIELLVTQLYDPSPEVVAAALEILEEACEDK 39 (115)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhch
Confidence 3456777777899999999999999999999887
No 147
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=40.20 E-value=2.8e+02 Score=27.53 Aligned_cols=72 Identities=15% Similarity=0.134 Sum_probs=49.5
Q ss_pred HHHHhhcccccCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhh-cCCCCchhhHHHHHHHHHHHCCCcccccc
Q 001839 208 LLLQCTSPLLWSHNSAVVLAAAGVHWIMSPKEDVKRIVKPLLFIL-RSSGASKYVVLCNIQVFAKALPHLFVPHY 281 (1007)
Q Consensus 208 lLL~~~~pLLqS~NsAVVlaaa~l~~~lap~~~l~~~~~pLv~LL-~S~~eiqyvvL~~I~~i~~~~p~lF~~~l 281 (1007)
++=+++.+.+...+-+.+++.+-.+-.- ...-+.++++|-.-| .+++++|+.+|..+..++..+...|...+
T Consensus 4 ~I~kATs~~~~~~D~~~il~icd~I~~~--~~~~k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i 76 (133)
T cd03561 4 LIERATSPSLEEPDWALNLELCDLINLK--PNGPKEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQV 76 (133)
T ss_pred HHHHHcCcccCCccHHHHHHHHHHHhCC--CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHH
Confidence 3445666666777777777777665332 122345666776444 56789999999999999998887776554
No 148
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=40.15 E-value=29 Score=44.32 Aligned_cols=15 Identities=13% Similarity=-0.212 Sum_probs=8.1
Q ss_pred CCchhhHHHHHHHHH
Q 001839 256 GASKYVVLCNIQVFA 270 (1007)
Q Consensus 256 ~eiqyvvL~~I~~i~ 270 (1007)
|+++--+|..|+..+
T Consensus 676 pei~~~AL~vIincV 690 (1516)
T KOG1832|consen 676 PEIIQPALNVIINCV 690 (1516)
T ss_pred HHHHHHHHhhhheee
Confidence 555555666555443
No 149
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=39.71 E-value=2.3e+02 Score=36.03 Aligned_cols=99 Identities=17% Similarity=0.210 Sum_probs=70.4
Q ss_pred HHHhhhccCchhhHHhhhhhccccccCCCCccccHHHHHHHHHHhhccCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHH
Q 001839 399 LFRSLDSIKVPEARVMIIWMVGEYSSVGVKIPRMLTTVLKYLAWCFKSEAVETKLQILNTTIKVLLCAKGGDMWTITRLF 478 (1007)
Q Consensus 399 L~~~ld~I~~p~ArAsIIWLLGEY~~~~e~ip~ia~DvLR~l~k~F~~E~~~VKlqILtlaaKL~~~~p~e~~~~i~~L~ 478 (1007)
|...++...+|..|+..+--+|.+.-. ....+.+.-.+++++..+|...||-..|.+.+-|.+...-....+++.+.
T Consensus 938 lIt~mek~p~P~IR~NaVvglgD~~vc---fN~~~de~t~yLyrrL~De~~~V~rtclmti~fLilagq~KVKGqlg~ma 1014 (1128)
T COG5098 938 LITSMEKHPIPRIRANAVVGLGDFLVC---FNTTADEHTHYLYRRLGDEDADVRRTCLMTIHFLILAGQLKVKGQLGKMA 1014 (1128)
T ss_pred HHHHHhhCCCcceeccceeecccccee---hhhhhHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHccceeeccchhhhH
Confidence 555666667899999888888887422 12346677778889999999999999988888887766422122344333
Q ss_pred HHHHHHHccCCChhHHhHHHHHHHHcc
Q 001839 479 SYLLELAECDLNYDVRDRARFFKKLFS 505 (1007)
Q Consensus 479 qyvLeLak~D~n~DVRDRArfy~~LL~ 505 (1007)
++-.|.|..|-|-||++..=+.
T Consensus 1015 -----~~L~deda~Isdmar~fft~~a 1036 (1128)
T COG5098 1015 -----LLLTDEDAEISDMARHFFTQIA 1036 (1128)
T ss_pred -----hhccCCcchHHHHHHHHHHHHH
Confidence 3447889999999998876554
No 150
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=38.50 E-value=58 Score=40.94 Aligned_cols=65 Identities=20% Similarity=0.098 Sum_probs=49.0
Q ss_pred HHHHHHhhcCCCChhHHHHHHHHHHHHhhc-CchhhHh---hHH----HHHHHHhcCCChhHHHHHHHHHHHh
Q 001839 13 VLVAVGKCARDPSVFVRKCAANALPKLHEL-RQEEITS---AIE----EIVGILLNDRSPGVVGAAAAAFASI 77 (1007)
Q Consensus 13 v~~aIkk~~~D~SPYVRKtAA~AI~Kly~l-dpe~~~~---~Li----eiL~~LL~D~~p~VvgsAv~Af~EI 77 (1007)
.-..|=+++.=++--||-.||+-..-+|-+ ||+.+++ .++ +.++.||.|.-|+|-+-|+--...+
T Consensus 175 ~~p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~kQf~~l~~LL~d~~p~VRS~a~~gv~k~ 247 (1005)
T KOG1949|consen 175 YKPILWRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQKQFEELYSLLEDPYPMVRSTAILGVCKI 247 (1005)
T ss_pred HhHHHHHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHH
Confidence 334667888999999999999999999987 7753222 222 3578899999999998887654444
No 151
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=37.30 E-value=53 Score=32.60 Aligned_cols=65 Identities=17% Similarity=0.163 Sum_probs=41.4
Q ss_pred HHHHhhcccccCCChHHHHHHHHH----HHhcCCH--HHHHH--HHHHHHHhhcC-CCCchhhHHHHHHHHHHH
Q 001839 208 LLLQCTSPLLWSHNSAVVLAAAGV----HWIMSPK--EDVKR--IVKPLLFILRS-SGASKYVVLCNIQVFAKA 272 (1007)
Q Consensus 208 lLL~~~~pLLqS~NsAVVlaaa~l----~~~lap~--~~l~~--~~~pLv~LL~S-~~eiqyvvL~~I~~i~~~ 272 (1007)
-+|+.+.-+|...+..+++|+|.- |....|. ..++. +...++.||.. +++|||=+|.+++.|...
T Consensus 43 ~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~~ 116 (119)
T PF11698_consen 43 ELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLMVN 116 (119)
T ss_dssp HHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence 467788888866666666766532 3333453 33443 33345688875 689999999999998754
No 152
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=37.29 E-value=1.6e+02 Score=31.50 Aligned_cols=50 Identities=16% Similarity=0.165 Sum_probs=38.9
Q ss_pred hhHHHHHHHHhhcCCCChhHHHHHHHHHHHHhhcCchhhHhhHHHHHHHHh
Q 001839 9 ISPLVLVAVGKCARDPSVFVRKCAANALPKLHELRQEEITSAIEEIVGILL 59 (1007)
Q Consensus 9 I~piv~~aIkk~~~D~SPYVRKtAA~AI~Kly~ldpe~~~~~LieiL~~LL 59 (1007)
++|-++.+||+++..++|-|.+.+..++.+|-...+ .--+.|...+.+||
T Consensus 77 vlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~-~vG~aLvPyyrqLL 126 (183)
T PF10274_consen 77 VLPQLIIPLKRALNTRDPEVFCATLKALQQLVTSSD-MVGEALVPYYRQLL 126 (183)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhh-hhhHHHHHHHHHHH
Confidence 466778899999999999999999999988865555 44467777777765
No 153
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=37.23 E-value=1.2e+02 Score=32.00 Aligned_cols=78 Identities=13% Similarity=0.093 Sum_probs=62.1
Q ss_pred hhhHHHHHHHHhhcCCCChhHHHHHHHHHHHHhhc---CchhhHhhHHHHHHHHhcCCChhHHHHHHHHHHHhCCCCccc
Q 001839 8 VISPLVLVAVGKCARDPSVFVRKCAANALPKLHEL---RQEEITSAIEEIVGILLNDRSPGVVGAAAAAFASICPNNFTL 84 (1007)
Q Consensus 8 ~I~piv~~aIkk~~~D~SPYVRKtAA~AI~Kly~l---dpe~~~~~LieiL~~LL~D~~p~VvgsAv~Af~EIcP~rldL 84 (1007)
.|++--+..|-+++.+.++-||..|..-|.-+-+. .| .+-+..|-.|..|.++.+-.-|...+.+++...-++
T Consensus 4 ~l~Qryl~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP----~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s~ 79 (187)
T PF12830_consen 4 ALVQRYLKNILELCLSSDDSVRLAALQVLELILRQGLVNP----KQCVPTLIALETSPNPSIRSRAYQLLKELHEKHESL 79 (187)
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCCh----HHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhHHH
Confidence 46677778888999999999999999999888775 56 344555667889999999999999999998655556
Q ss_pred hHHHH
Q 001839 85 IGRNY 89 (1007)
Q Consensus 85 ihk~y 89 (1007)
++..|
T Consensus 80 v~~~~ 84 (187)
T PF12830_consen 80 VESRY 84 (187)
T ss_pred HHHHH
Confidence 65443
No 154
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=37.22 E-value=6.9e+02 Score=28.64 Aligned_cols=90 Identities=16% Similarity=0.055 Sum_probs=57.8
Q ss_pred HHHHHhhcCCCChhHHHHHHHHHHHHhhc--Cchh---hHhhHHHHHHHHhcCCC--hhHHHHHHHHHHHhC----CCCc
Q 001839 14 LVAVGKCARDPSVFVRKCAANALPKLHEL--RQEE---ITSAIEEIVGILLNDRS--PGVVGAAAAAFASIC----PNNF 82 (1007)
Q Consensus 14 ~~aIkk~~~D~SPYVRKtAA~AI~Kly~l--dpe~---~~~~LieiL~~LL~D~~--p~VvgsAv~Af~EIc----P~rl 82 (1007)
+...-..+.|++.-.|-.|..+|.+++.- -++. ....|.+.+.+.++-.. -.++++.+.++.-|. .+.-
T Consensus 45 L~~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ 124 (309)
T PF05004_consen 45 LKEAIDLLTEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSE 124 (309)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHH
Confidence 44455667899999999999999998854 3422 45667777777776433 344454444554443 2334
Q ss_pred cchHHHHHHHHHhCCCCChhh
Q 001839 83 TLIGRNYRNLCQILPDVEEWG 103 (1007)
Q Consensus 83 dLihk~yrkLc~~L~d~dEWg 103 (1007)
++.......|.+++.|-..=.
T Consensus 125 ei~~~~~~~L~~~l~d~s~~~ 145 (309)
T PF05004_consen 125 EIFEELKPVLKRILTDSSASP 145 (309)
T ss_pred HHHHHHHHHHHHHHhCCccch
Confidence 555556677888887765433
No 155
>PF05536 Neurochondrin: Neurochondrin
Probab=37.21 E-value=5.8e+02 Score=31.70 Aligned_cols=72 Identities=22% Similarity=0.109 Sum_probs=45.7
Q ss_pred HHHHHHHHHHhhccCcHHHHHHHHHHHHHHhhhcCCC------ChHHHHHHHHHHHHHHccCCChhHHhHHHHHHHHc
Q 001839 433 LTTVLKYLAWCFKSEAVETKLQILNTTIKVLLCAKGG------DMWTITRLFSYLLELAECDLNYDVRDRARFFKKLF 504 (1007)
Q Consensus 433 a~DvLR~l~k~F~~E~~~VKlqILtlaaKL~~~~p~e------~~~~i~~L~qyvLeLak~D~n~DVRDRArfy~~LL 504 (1007)
..-++..+++.|..-+...|.+++.....++-..|.. ...-...+..++-.+-+.-..+.-|+-|......+
T Consensus 182 l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~~iL~sr~~~~~R~~al~Laa~L 259 (543)
T PF05536_consen 182 LHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKGLRDILQSRLTPSQRDPALNLAASL 259 (543)
T ss_pred HHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 3456788889999888999999999999998877421 11112334444333333455666677665554444
No 156
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=37.03 E-value=88 Score=40.19 Aligned_cols=101 Identities=22% Similarity=0.207 Sum_probs=74.3
Q ss_pred hhHHHHHHHHhhcCCCChhHHHHHHHHHHHHhhc-CchhhHhhHHHHHHHHhcCCChhHHHHHHHHHHHhCCCCc-----
Q 001839 9 ISPLVLVAVGKCARDPSVFVRKCAANALPKLHEL-RQEEITSAIEEIVGILLNDRSPGVVGAAAAAFASICPNNF----- 82 (1007)
Q Consensus 9 I~piv~~aIkk~~~D~SPYVRKtAA~AI~Kly~l-dpe~~~~~LieiL~~LL~D~~p~VvgsAv~Af~EIcP~rl----- 82 (1007)
....+++.+...+.|+.|-||=.||-.++|+-.+ ++....+.+..+++.|..|.+..|-..|..|+..|--.++
T Consensus 593 ~~~~Llp~~~~l~~D~vanVR~nvak~L~~i~~~L~~~~~~~~v~pll~~L~~d~~~dvr~~a~~a~~~i~l~~~~~~~d 672 (759)
T KOG0211|consen 593 TCEDLLPVFLDLVKDPVANVRINVAKHLPKILKLLDESVRDEEVLPLLETLSSDQELDVRYRAILAFGSIELSRLESSLD 672 (759)
T ss_pred HHHHHhHHHHHhccCCchhhhhhHHHHHHHHHhhcchHHHHHHHHHHHHHhccCcccchhHHHHHHHHHHHHHHHhhhHH
Confidence 4456777888999999999999999999998876 5534667788899999999999999999999987743321
Q ss_pred cchHHHHHHHHHhCCCCChhhHHHHHHHHHHhh
Q 001839 83 TLIGRNYRNLCQILPDVEEWGQILLIEILLRYV 115 (1007)
Q Consensus 83 dLihk~yrkLc~~L~d~dEWgQv~iL~lL~rY~ 115 (1007)
.-.|+.+-.+. ..|..+.++.++.-.-
T Consensus 673 ~~~~~~~~a~~------~~~~~~~~~~~~~~~~ 699 (759)
T KOG0211|consen 673 VRDKKQLIAFL------EQDSHVLEVEIIKTKL 699 (759)
T ss_pred HHHHHHHHHHH------hhhhHHHHHHHHHHHh
Confidence 12233333332 6777777777765444
No 157
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=36.96 E-value=4.6e+02 Score=29.42 Aligned_cols=68 Identities=15% Similarity=0.319 Sum_probs=50.4
Q ss_pred HHHHHHhhccCChhHHHHHHHHHHHHHHhCcc--cHHHHHHHHHHHHHhhhccccccCCCCCccchhhHHHHHHHHHHc
Q 001839 315 FKEFQDYIRDPDRRFAADTVAAIGLCARKLPK--MANTCVEGLLALIRQELLTSDIESGNGEADVLIQSIISIKSIIKQ 391 (1007)
Q Consensus 315 L~EL~~Yv~d~D~~fv~~aI~AIG~~A~k~p~--~a~~cl~~Ll~LLs~~~~~s~~~~~~~~~~vV~EsVvvIk~Llq~ 391 (1007)
++.|..|+++.|...+.+++..++.+..++|. ....-++.|+.++.... .|...+..++..+..|+++
T Consensus 1 V~~Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~L~~~ev~~L~~F~~~rl---------~D~~~~~~~l~gl~~L~~~ 70 (262)
T PF14500_consen 1 VQSLGEYLTSEDPIIRAKALELLSEVLERLPPDFLSRQEVQVLLDFFCSRL---------DDHACVQPALKGLLALVKM 70 (262)
T ss_pred CcchhhhhCCCCHHHHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHHHHHh---------ccHhhHHHHHHHHHHHHhC
Confidence 35688999999999999999999999999985 34455677777775421 2344566777777777754
No 158
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=36.81 E-value=2.4e+02 Score=33.23 Aligned_cols=150 Identities=19% Similarity=0.197 Sum_probs=0.0
Q ss_pred HHHHHHhhcCCCCchh-hHHHHHHHHHHHCCCccccccceeeeccCCCHHHHHHHHHHH-HhccCCCCHHHHHH-HHHHh
Q 001839 245 VKPLLFILRSSGASKY-VVLCNIQVFAKALPHLFVPHYEDFFVSSSDSYQSKALKLEIL-SSIVTESSISSVFK-EFQDY 321 (1007)
Q Consensus 245 ~~pLv~LL~S~~eiqy-vvL~~I~~i~~~~p~lF~~~l~~Ffv~~~Dp~~IK~lKLeIL-~~Lane~Ni~~IL~-EL~~Y 321 (1007)
.+.|+.|++..|.++| +++.....=++. ...+|+..|+..-+.|+ +.+.++.++..+++ .+-.|
T Consensus 4 ~N~Lv~l~~~~p~l~~~~~~~~~~~~i~~-------------~lL~~~~~vraa~yRilRy~i~d~~~l~~~~~l~id~~ 70 (371)
T PF14664_consen 4 ANDLVDLLKRHPTLKYDLVLSFFGERIQC-------------MLLSDSKEVRAAGYRILRYLISDEESLQILLKLHIDIF 70 (371)
T ss_pred HHHHHHHHHhCchhhhhhhHHHHHHHHHH-------------HHCCCcHHHHHHHHHHHHHHHcCHHHHHHHHHcCCchh
Q ss_pred hc---------cCChhHHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhccccccCCCCCccchhhHHHHHHHHHHcC
Q 001839 322 IR---------DPDRRFAADTVAAIGLCARKLPKMANTCVEGLLALIRQELLTSDIESGNGEADVLIQSIISIKSIIKQD 392 (1007)
Q Consensus 322 v~---------d~D~~fv~~aI~AIG~~A~k~p~~a~~cl~~Ll~LLs~~~~~s~~~~~~~~~~vV~EsVvvIk~Llq~~ 392 (1007)
+- +...+-+-+.||++-.+..........+++.++.+.. ..++..-.-|+..++.|...+
T Consensus 71 ii~SL~~~~~~~~ER~QALkliR~~l~~~~~~~~~~~~vvralvaiae-----------~~~D~lr~~cletL~El~l~~ 139 (371)
T PF14664_consen 71 IIRSLDRDNKNDVEREQALKLIRAFLEIKKGPKEIPRGVVRALVAIAE-----------HEDDRLRRICLETLCELALLN 139 (371)
T ss_pred hHhhhcccCCChHHHHHHHHHHHHHHHhcCCcccCCHHHHHHHHHHHh-----------CCchHHHHHHHHHHHHHHhhC
Q ss_pred CchHHH------HHHhhhccCchhhHHhhhhhc
Q 001839 393 PSCHEK------LFRSLDSIKVPEARVMIIWMV 419 (1007)
Q Consensus 393 P~~~~~------L~~~ld~I~~p~ArAsIIWLL 419 (1007)
|+.... |.+.+-+ .....-.++++.+
T Consensus 140 P~lv~~~gG~~~L~~~l~d-~~~~~~~~l~~~l 171 (371)
T PF14664_consen 140 PELVAECGGIRVLLRALID-GSFSISESLLDTL 171 (371)
T ss_pred HHHHHHcCCHHHHHHHHHh-ccHhHHHHHHHHH
No 159
>TIGR01451 B_ant_repeat conserved repeat domain. This model represents the conserved region of about 53 amino acids shared between regions, usually repeated, of proteins from a small number of phylogenetically distant prokaryotes. Examples include a 132-residue region found repeated in three of the five longest proteins of Bacillus anthracis, a 131-residue repeat in a cell wall-anchored protein of Enterococcus faecalis, and a 120-residue repeat in Methanobacterium thermoautotrophicum. A similar region is found in some Chlamydial outer membrane proteins.
Probab=36.74 E-value=46 Score=28.07 Aligned_cols=31 Identities=10% Similarity=0.034 Sum_probs=26.8
Q ss_pred CeEEEEEEEEeCCCCceeeeEeeccccchhhhhhh
Q 001839 754 QLVCLETFFENCSSETMSEVTLVDEESHKALDLAD 788 (1007)
Q Consensus 754 ~mv~v~l~f~N~s~~~i~~i~i~~~~~~~~~~g~~ 788 (1007)
.-|...|+++|.++.+..+|.|.+. +|+|+.
T Consensus 12 d~v~Yti~v~N~g~~~a~~v~v~D~----lP~g~~ 42 (53)
T TIGR01451 12 DTITYTITVTNNGNVPATNVVVTDI----LPSGTT 42 (53)
T ss_pred CEEEEEEEEEECCCCceEeEEEEEc----CCCCCE
Confidence 4567889999999999999999985 788863
No 160
>PHA02664 hypothetical protein; Provisional
Probab=36.71 E-value=25 Score=39.89 Aligned_cols=25 Identities=28% Similarity=0.369 Sum_probs=16.2
Q ss_pred HHHHHHHhCcccHHHHHHHHHHHHH
Q 001839 336 AIGLCARKLPKMANTCVEGLLALIR 360 (1007)
Q Consensus 336 AIG~~A~k~p~~a~~cl~~Ll~LLs 360 (1007)
.=..|.+.-|.++.+.+-.|.++-+
T Consensus 244 decvcce~rphvartavwtlaeicr 268 (534)
T PHA02664 244 DECVCCELRPHVARTAVWTLAEICR 268 (534)
T ss_pred cceeeecccCCchhhhhhhHHHHhC
Confidence 3456777777777776666666543
No 161
>PF11611 DUF4352: Domain of unknown function (DUF4352); InterPro: IPR021652 This entry is represented by Bacteriophage A118, Gp32. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry represents a group of putative lipoproteins of unknown function.; PDB: 3CFU_A.
Probab=36.55 E-value=1.1e+02 Score=29.08 Aligned_cols=75 Identities=15% Similarity=0.184 Sum_probs=39.0
Q ss_pred CCCeEEEEEEEEeCCCCcee----eeEeeccccchhhhhhhhhhhccccccccCCCCCCcccCCcccccCCCCeeEEEEE
Q 001839 752 SPQLVCLETFFENCSSETMS----EVTLVDEESHKALDLADLTLATTASSLTSQSDLPTLVPMEEITSLEPGQTMKRILE 827 (1007)
Q Consensus 752 s~~mv~v~l~f~N~s~~~i~----~i~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~f~~i~~l~p~~~~~~~~~ 827 (1007)
.-+.+.|+++++|.+++++. +..+.+. +|-.-..... .. . ...-.....|.||+++++.|.
T Consensus 34 g~~fv~v~v~v~N~~~~~~~~~~~~f~l~d~------~g~~~~~~~~-----~~-~---~~~~~~~~~i~pG~~~~g~l~ 98 (123)
T PF11611_consen 34 GNKFVVVDVTVKNNGDEPLDFSPSDFKLYDS------DGNKYDPDFS-----AS-S---NDNDLFSETIKPGESVTGKLV 98 (123)
T ss_dssp -SEEEEEEEEEEE-SSS-EEEEGGGEEEE-T------T--B--EEE------CC-C---TTTB--EEEE-TT-EEEEEEE
T ss_pred CCEEEEEEEEEEECCCCcEEecccceEEEeC------CCCEEccccc-----ch-h---ccccccccEECCCCEEEEEEE
Confidence 35789999999999999884 2344321 1211000000 00 0 000023458999999999999
Q ss_pred EEcCCCCccceEEE
Q 001839 828 VRFHHHLLPLKLAL 841 (1007)
Q Consensus 828 idF~~~~~~~~~~l 841 (1007)
.+=....++..|+.
T Consensus 99 F~vp~~~~~~~l~~ 112 (123)
T PF11611_consen 99 FEVPKDDKPYTLEY 112 (123)
T ss_dssp EEESTT-GG-EEEE
T ss_pred EEECCCCccEEEEE
Confidence 98888888866665
No 162
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=36.44 E-value=3.4e+02 Score=35.52 Aligned_cols=59 Identities=14% Similarity=0.183 Sum_probs=50.6
Q ss_pred hhcCCCChhHHHHHHHHHHHHhhcC-chhhHhhHHHHHHHHhcCCChhHHHHHHHHHHHhC
Q 001839 19 KCARDPSVFVRKCAANALPKLHELR-QEEITSAIEEIVGILLNDRSPGVVGAAAAAFASIC 78 (1007)
Q Consensus 19 k~~~D~SPYVRKtAA~AI~Kly~ld-pe~~~~~LieiL~~LL~D~~p~VvgsAv~Af~EIc 78 (1007)
+++.|.+--+|+.+|+||.-+-..| | ++-+++...|.++|.+.+..-+-+|+.++.|+.
T Consensus 97 ~~l~~sn~ki~~~vay~is~Ia~~D~P-d~WpElv~~i~~~l~~~n~n~i~~am~vL~el~ 156 (1005)
T KOG2274|consen 97 NLLDDSNSKIRSAVAYAISSIAAVDYP-DEWPELVPFILKLLSSGNENSIHGAMRVLAELS 156 (1005)
T ss_pred hhhhccccccchHHHHHHHHHHhccCc-hhhHHHHHHHHHHHhccchhhhhhHHHHHHHHH
Confidence 4555999999999999999998875 6 778889999999999988888888888887764
No 163
>PF04931 DNA_pol_phi: DNA polymerase phi; InterPro: IPR007015 Proteins of this family are predominantly nucleolar. The majority are described as transcription factor transactivators. The family also includes the fifth essential DNA polymerase (Pol5p) of Schizosaccharomyces pombe (Fission yeast) and Saccharomyces cerevisiae (Baker's yeast) (2.7.7.7 from EC). Pol5p is localized exclusively to the nucleolus and binds near or at the enhancer region of rRNA-encoding DNA repeating units.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006351 transcription, DNA-dependent
Probab=35.91 E-value=34 Score=43.97 Aligned_cols=12 Identities=42% Similarity=0.598 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHH
Q 001839 349 NTCVEGLLALIR 360 (1007)
Q Consensus 349 ~~cl~~Ll~LLs 360 (1007)
.|++..++.++.
T Consensus 391 kwil~~ll~lir 402 (784)
T PF04931_consen 391 KWILDQLLSLIR 402 (784)
T ss_pred HHHHHHHHHHHh
Confidence 344444444443
No 164
>PF14874 PapD-like: Flagellar-associated PapD-like
Probab=35.68 E-value=2.6e+02 Score=25.87 Aligned_cols=74 Identities=18% Similarity=0.218 Sum_probs=42.9
Q ss_pred EEEEEEEEeCCCCceeeeEeeccccchhhhhhhhhhhccccccccCCCCCCcccCCcccccCCCCeeEEEEEEEcC--CC
Q 001839 756 VCLETFFENCSSETMSEVTLVDEESHKALDLADLTLATTASSLTSQSDLPTLVPMEEITSLEPGQTMKRILEVRFH--HH 833 (1007)
Q Consensus 756 v~v~l~f~N~s~~~i~~i~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~f~~i~~l~p~~~~~~~~~idF~--~~ 833 (1007)
.+..|+++|.|..+. +.++...+. ..+-+ .+. +.=..|+||++++.. |.|+ +.
T Consensus 22 ~~~~v~l~N~s~~p~-~f~v~~~~~--~~~~~------------------~v~--~~~g~l~PG~~~~~~--V~~~~~~~ 76 (102)
T PF14874_consen 22 YSRTVTLTNTSSIPA-RFRVRQPES--LSSFF------------------SVE--PPSGFLAPGESVELE--VTFSPTKP 76 (102)
T ss_pred EEEEEEEEECCCCCE-EEEEEeCCc--CCCCE------------------EEE--CCCCEECCCCEEEEE--EEEEeCCC
Confidence 357889999998885 444433210 00011 111 122469999976654 5555 22
Q ss_pred C--ccceEEEEEcCCeeeeEEec
Q 001839 834 L--LPLKLALHCNGKKLPVKLRP 854 (1007)
Q Consensus 834 ~--~~~~~~l~~~~~~~~v~i~p 854 (1007)
. .-.++.+.+.++.|.|.|+.
T Consensus 77 ~g~~~~~l~i~~e~~~~~i~v~a 99 (102)
T PF14874_consen 77 LGDYEGSLVITTEGGSFEIPVKA 99 (102)
T ss_pred CceEEEEEEEEECCeEEEEEEEE
Confidence 2 34556677788888888775
No 165
>KOG3723 consensus PH domain protein Melted [Signal transduction mechanisms]
Probab=35.58 E-value=1.2e+02 Score=37.45 Aligned_cols=234 Identities=12% Similarity=0.160 Sum_probs=0.0
Q ss_pred CCCCChhHHHHHHhhcccccCCC--------hHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcCCCCchhhHHHHHHHHH
Q 001839 199 SGKTNDDVKLLLQCTSPLLWSHN--------SAVVLAAAGVHWIMSPKEDVKRIVKPLLFILRSSGASKYVVLCNIQVFA 270 (1007)
Q Consensus 199 ~~~~D~D~~lLL~~~~pLLqS~N--------sAVVlaaa~l~~~lap~~~l~~~~~pLv~LL~S~~eiqyvvL~~I~~i~ 270 (1007)
.+.+-.|+.--|.+++|.+.+.. +-|=+-++++.-.+-....+++-+.+||.||++ +.+.++..+-
T Consensus 25 d~Di~dD~te~l~~ik~I~s~~dY~~NnnDQSVVEIcVtRit~aIRET~siE~YaAaLVDlLd~------cL~hnl~p~g 98 (851)
T KOG3723|consen 25 DSDIEDDLTEALEQIKIISSSSDYQTNNNDQSVVEICVTRITTAIRETESIEKYAAALVDLLDS------CLEHNLRPFG 98 (851)
T ss_pred hHHHHhHHHHHHHHHHHhhcCcccccCCCcchhhhhHHHHHHHHHHhcchHHHHHHHHHHHHHH------HHhccCccCC
Q ss_pred HHCC-----CccccccceeeeccCCCHHHHHHHHHHHHhccCCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHHHHhCc
Q 001839 271 KALP-----HLFVPHYEDFFVSSSDSYQSKALKLEILSSIVTESSISSVFKEFQDYIRDPDRRFAADTVAAIGLCARKLP 345 (1007)
Q Consensus 271 ~~~p-----~lF~~~l~~Ffv~~~Dp~~IK~lKLeIL~~Lane~Ni~~IL~EL~~Yv~d~D~~fv~~aI~AIG~~A~k~p 345 (1007)
.+.- ++-..-+.+.|..|+-+. +..++-+--+..+.+-+.+..++...-|..++|+.+|.++-.-+
T Consensus 99 ~kded~PHaKIAsDi~SSiFLny~K~~---------~m~~a~p~av~fL~rgn~el~rn~~~ylslaai~~adLL~~hTE 169 (851)
T KOG3723|consen 99 KKDEDTPHAKIASDIMSSIFLNYNKPP---------VMALAIPIAVKFLHRGNKELCRNMSNYLSLAAITKADLLADHTE 169 (851)
T ss_pred CCCCCCchhhHHHHHHHHHHHhcCCCC---------ceeeehhhHHHHHhccChhhcccchhhhhHHHHhhhhhccCchH
Q ss_pred ccHHHHHH---HHHHHHHhhhccccccCCCCCccchhhHHHHHHHHH-------------------HcCCchHHH----H
Q 001839 346 KMANTCVE---GLLALIRQELLTSDIESGNGEADVLIQSIISIKSII-------------------KQDPSCHEK----L 399 (1007)
Q Consensus 346 ~~a~~cl~---~Ll~LLs~~~~~s~~~~~~~~~~vV~EsVvvIk~Ll-------------------q~~P~~~~~----L 399 (1007)
.+....|. +||++++.-. +..+.++.--.-.+-.++ |+.|+..+. |
T Consensus 170 v~~~siLSgn~~LLrvlS~Vy--------e~~P~~i~PhlP~l~~lL~q~~p~~~~ll~~l~~LI~Qk~~evL~~ciP~L 241 (851)
T KOG3723|consen 170 VIVKSILSGNTMLLRVLSAVY--------EKQPQPINPHLPELLALLSQLEPEQYHLLRLLHVLIKQKQLEVLQKCIPFL 241 (851)
T ss_pred HHHHHHhccchHHHHHHHHHH--------hcCCCccCcccHHHHHHhcCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Q ss_pred HHhhhccCchhhHHhhhhhccccccCCCCccccHHHHHHHHHHhhccCcHHHHHHHHHHH
Q 001839 400 FRSLDSIKVPEARVMIIWMVGEYSSVGVKIPRMLTTVLKYLAWCFKSEAVETKLQILNTT 459 (1007)
Q Consensus 400 ~~~ld~I~~p~ArAsIIWLLGEY~~~~e~ip~ia~DvLR~l~k~F~~E~~~VKlqILtla 459 (1007)
|-.+.+-+....+-.|+-.|..|+ ...-....+.+|.+++.|..-.... ++|.|++
T Consensus 242 ~g~l~ds~~~~i~~~Ilk~ia~~~---pv~l~~~~E~l~e~~~~~p~~~~~~-a~i~T~~ 297 (851)
T KOG3723|consen 242 IGHLKDSTHNDIILNILKEIAVYE---PVALNSFLEMLKEIGERFPYLTGQM-ARIYTAV 297 (851)
T ss_pred HHHhccccchhHHHHHHHHHHhcC---ccchhhHHHHHHHHHHhCCCccHHH-HHHHHHh
No 166
>PF05753 TRAP_beta: Translocon-associated protein beta (TRAPB); InterPro: IPR008856 This family consists of several eukaryotic translocon-associated protein beta (TRAPB) or signal sequence receptor beta subunit (SSR-beta) proteins. The normal translocation of nascent polypeptides into the lumen of the endoplasmic reticulum (ER) is thought to be aided in part by a translocon-associated protein (TRAP) complex consisting of 4 protein subunits. The association of mature proteins with the ER and Golgi, or other intracellular locales, such as lysosomes, depends on the initial targeting of the nascent polypeptide to the ER membrane. A similar scenario must also exist for proteins destined for secretion [].; GO: 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=34.82 E-value=66 Score=34.12 Aligned_cols=58 Identities=19% Similarity=0.194 Sum_probs=39.2
Q ss_pred CeEEEEEEEEeCCCCceeeeEeeccccchhh-hhhhhhhhccccccccCCCCCCcccCCcccccCCCCeeEEEEEEE
Q 001839 754 QLVCLETFFENCSSETMSEVTLVDEESHKAL-DLADLTLATTASSLTSQSDLPTLVPMEEITSLEPGQTMKRILEVR 829 (1007)
Q Consensus 754 ~mv~v~l~f~N~s~~~i~~i~i~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~f~~i~~l~p~~~~~~~~~id 829 (1007)
.=+.|++++-|.++.+..+|.|.|.. .| ++.. +. ....--.+++|+||++++...-+.
T Consensus 38 ~~v~V~~~iyN~G~~~A~dV~l~D~~---fp~~~F~--lv-------------sG~~s~~~~~i~pg~~vsh~~vv~ 96 (181)
T PF05753_consen 38 EDVTVTYTIYNVGSSAAYDVKLTDDS---FPPEDFE--LV-------------SGSLSASWERIPPGENVSHSYVVR 96 (181)
T ss_pred cEEEEEEEEEECCCCeEEEEEEECCC---CCccccE--ec-------------cCceEEEEEEECCCCeEEEEEEEe
Confidence 44668899999999999999999842 22 2211 00 011112568999999998877665
No 167
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=33.95 E-value=1.4e+02 Score=37.90 Aligned_cols=105 Identities=20% Similarity=0.168 Sum_probs=74.4
Q ss_pred hhHHHHHHHHhhcCCCChhHHHHHHHHHHHHhhc----Cchh-hHhhHHHHHHHHhcCCChhHHHHHHHHHHHhCCCCcc
Q 001839 9 ISPLVLVAVGKCARDPSVFVRKCAANALPKLHEL----RQEE-ITSAIEEIVGILLNDRSPGVVGAAAAAFASICPNNFT 83 (1007)
Q Consensus 9 I~piv~~aIkk~~~D~SPYVRKtAA~AI~Kly~l----dpe~-~~~~LieiL~~LL~D~~p~VvgsAv~Af~EIcP~rld 83 (1007)
|++-..--+.+.+.|+-|-||.+|..++.|++.. -|.. -++-+-.++..+-.|....|-.|.+-.+.++.-+.
T Consensus 217 i~~kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~fWe~iP~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np-- 294 (1005)
T KOG1949|consen 217 IIQKQFEELYSLLEDPYPMVRSTAILGVCKITSKFWEMIPPTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDNP-- 294 (1005)
T ss_pred HHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHcCc--
Confidence 4555556678899999999999999999998764 5522 33334445555566888888888888888886332
Q ss_pred chHHHHHHHHH----hCCCCChhhHHHHHHHHHHhh
Q 001839 84 LIGRNYRNLCQ----ILPDVEEWGQILLIEILLRYV 115 (1007)
Q Consensus 84 Lihk~yrkLc~----~L~d~dEWgQv~iL~lL~rY~ 115 (1007)
+-|+.+..++. .|.|-.|=-.+...+||.+..
T Consensus 295 ~sh~~le~~Lpal~~~l~D~se~VRvA~vd~ll~ik 330 (1005)
T KOG1949|consen 295 LSHPLLEQLLPALRYSLHDNSEKVRVAFVDMLLKIK 330 (1005)
T ss_pred cchhHHHHHHHhcchhhhccchhHHHHHHHHHHHHH
Confidence 23444444444 446778888899999998764
No 168
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=33.88 E-value=4.3e+02 Score=32.19 Aligned_cols=80 Identities=14% Similarity=0.150 Sum_probs=50.0
Q ss_pred chhhHHHHHHHHHHHC-CCccccccce-----eeeccC-CCHHHHHHHHHHHHhccCCC------CHHHHHHHHHHhhcc
Q 001839 258 SKYVVLCNIQVFAKAL-PHLFVPHYED-----FFVSSS-DSYQSKALKLEILSSIVTES------SISSVFKEFQDYIRD 324 (1007)
Q Consensus 258 iqyvvL~~I~~i~~~~-p~lF~~~l~~-----Ffv~~~-Dp~~IK~lKLeIL~~Lane~------Ni~~IL~EL~~Yv~d 324 (1007)
-+--+|..|..|.... -.+.+.|+.. |-++.+ ....+|.+.|.+|..+++.. ..+..+..+.+-..+
T Consensus 303 ~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE~ai~K~Leaa~d 382 (516)
T KOG2956|consen 303 ERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTEIAICKVLEAAKD 382 (516)
T ss_pred HHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchHHHHHHHHHHHHhC
Confidence 4556788788776544 2344445433 334443 34569999999999888753 445556666667777
Q ss_pred CChhHHHHHHHHH
Q 001839 325 PDRRFAADTVAAI 337 (1007)
Q Consensus 325 ~D~~fv~~aI~AI 337 (1007)
.++..++.|..+.
T Consensus 383 s~~~v~~~Aeed~ 395 (516)
T KOG2956|consen 383 SQDEVMRVAEEDC 395 (516)
T ss_pred CchhHHHHHHHHH
Confidence 7666666655543
No 169
>KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport]
Probab=33.86 E-value=3.4e+02 Score=33.57 Aligned_cols=119 Identities=14% Similarity=0.269 Sum_probs=71.2
Q ss_pred hHHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhccccccCCCCCccchhhHHH-HHHHHHHcCC-chHHH---HHHh
Q 001839 328 RFAADTVAAIGLCARKLPKMANTCVEGLLALIRQELLTSDIESGNGEADVLIQSII-SIKSIIKQDP-SCHEK---LFRS 402 (1007)
Q Consensus 328 ~fv~~aI~AIG~~A~k~p~~a~~cl~~Ll~LLs~~~~~s~~~~~~~~~~vV~EsVv-vIk~Llq~~P-~~~~~---L~~~ 402 (1007)
+|+.+.+..+..+|--+... .|++.+..-+..+ ...+...|+.. .++.++++-+ +...- ..+.
T Consensus 367 ~fR~~v~dvl~Dv~~iigs~--e~lk~~~~~l~e~----------~~~We~~EAaLF~l~~~~~~~~~~e~~i~pevl~~ 434 (559)
T KOG2081|consen 367 EFRLKVGDVLKDVAFIIGSD--ECLKQMYIRLKEN----------NASWEEVEAALFILRAVAKNVSPEENTIMPEVLKL 434 (559)
T ss_pred HHHHHHHHHHHHHHHHhCcH--HHHHHHHHHHccC----------CCchHHHHHHHHHHHHHhccCCccccchHHHHHHH
Confidence 68888888888888777665 5777666555431 12345666665 4555554432 22222 3333
Q ss_pred hhcc--CchhhHHhhhhhccccccCCCCccccHHHHHHHHHHhhccCcHHHHHHHHHHHHHHhhhc
Q 001839 403 LDSI--KVPEARVMIIWMVGEYSSVGVKIPRMLTTVLKYLAWCFKSEAVETKLQILNTTIKVLLCA 466 (1007)
Q Consensus 403 ld~I--~~p~ArAsIIWLLGEY~~~~e~ip~ia~DvLR~l~k~F~~E~~~VKlqILtlaaKL~~~~ 466 (1007)
+-++ +.| -|..-+-++|+|++-.+..|.+..-+++++-..+..-. +.+++-+++++
T Consensus 435 i~nlp~Q~~-~~~ts~ll~g~~~ew~~~~p~~le~v~~~~~~~~~~~~-------~as~~a~~~~~ 492 (559)
T KOG2081|consen 435 ICNLPEQAP-LRYTSILLLGEYSEWVEQHPELLEPVLRYIRQGLQLKR-------LASAAALAFHR 492 (559)
T ss_pred HhCCccchh-HHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhhhcc-------hhHHHHHHHHH
Confidence 3222 223 56666889999998777788888888887765554333 44444444443
No 170
>cd06561 AlkD_like A new structural DNA glycosylase. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.
Probab=33.56 E-value=79 Score=32.80 Aligned_cols=35 Identities=23% Similarity=0.252 Sum_probs=31.4
Q ss_pred hHHHHHHHHhhcCCCChhHHHHHHHHHHHHhhcCc
Q 001839 10 SPLVLVAVGKCARDPSVFVRKCAANALPKLHELRQ 44 (1007)
Q Consensus 10 ~piv~~aIkk~~~D~SPYVRKtAA~AI~Kly~ldp 44 (1007)
.+.++..+..++.|.+.||||+.+-++.-++..+|
T Consensus 139 ~~~~l~~~~~~~~d~~~~Vqkav~w~L~~~~~~~~ 173 (197)
T cd06561 139 FDLLLEIIERLLHDEEYFVQKAVGWALREYGKKDP 173 (197)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhCH
Confidence 45667778899999999999999999999999998
No 171
>PF11935 DUF3453: Domain of unknown function (DUF3453); InterPro: IPR021850 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 239 to 261 amino acids in length. ; PDB: 3ODS_A 3ODR_A 3O2Q_A 3O2T_A 3O2S_A 3GS3_A.
Probab=33.03 E-value=4.6e+02 Score=28.81 Aligned_cols=111 Identities=14% Similarity=0.211 Sum_probs=73.2
Q ss_pred HHHHHHHHHHhhcC-CCCchhhHHHHHHHHHHHC-CCcc-----cccccee---eeccCCCHHHHHHHHHHHHhccCCCC
Q 001839 241 VKRIVKPLLFILRS-SGASKYVVLCNIQVFAKAL-PHLF-----VPHYEDF---FVSSSDSYQSKALKLEILSSIVTESS 310 (1007)
Q Consensus 241 l~~~~~pLv~LL~S-~~eiqyvvL~~I~~i~~~~-p~lF-----~~~l~~F---fv~~~Dp~~IK~lKLeIL~~Lane~N 310 (1007)
+..+...++.++.+ ++.++..+++-+..++... +..= ...-..| .|..+-| .++..+||-=.
T Consensus 41 ~~~lK~~Il~~~~~~~~gvk~~~iKFle~vIl~qs~~~~~~~~~~~~~~d~SL~~vp~~Hp-~l~~~~Le~Ea------- 112 (239)
T PF11935_consen 41 MNELKDRILSLWDSENPGVKLAAIKFLERVILVQSPGSSDSPPRRGSPNDFSLSSVPPNHP-LLNPQQLEAEA------- 112 (239)
T ss_dssp HHHHHHHHHHGGGSSSHHHHHHHHHHHHHHHHHTS---TTS---GGGTTS--GGGS-TT-S-SS-HHHHHHHH-------
T ss_pred HHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCCCCccccccccCCCHHHcCCCCC-cCCHHHHHHHH-------
Confidence 56677777888876 4669999999888776543 1111 0011112 1222333 36666665433
Q ss_pred HHHHHHHHHHhhccCC--hhHHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Q 001839 311 ISSVFKEFQDYIRDPD--RRFAADTVAAIGLCARKLPKMANTCVEGLLALIR 360 (1007)
Q Consensus 311 i~~IL~EL~~Yv~d~D--~~fv~~aI~AIG~~A~k~p~~a~~cl~~Ll~LLs 360 (1007)
..+|+.|..++.+.. ..+....+.+++.+|.+=|.+...++..|+.+-.
T Consensus 113 -~~lL~~Ll~~l~~~~i~~~~~~a~insL~~Iak~RP~~~~~Il~~ll~~~~ 163 (239)
T PF11935_consen 113 -NGLLDRLLDVLQSPHISSPLLTAIINSLSNIAKQRPQFMSRILPALLSFNP 163 (239)
T ss_dssp -HHHHHHHHHHHC-TT--HHHHHHHHHHHHHHHHHSGGGHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCc
Confidence 367888888886654 6789999999999999999999999999998754
No 172
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=32.96 E-value=69 Score=32.14 Aligned_cols=73 Identities=15% Similarity=0.126 Sum_probs=50.3
Q ss_pred HHHHHhhcccccCCChHHHHHHHHHHHhcCCHHHHHHHHHHHH-HhhcCCCCchhhHHHHHHHHHHHCCCcccccc
Q 001839 207 KLLLQCTSPLLWSHNSAVVLAAAGVHWIMSPKEDVKRIVKPLL-FILRSSGASKYVVLCNIQVFAKALPHLFVPHY 281 (1007)
Q Consensus 207 ~lLL~~~~pLLqS~NsAVVlaaa~l~~~lap~~~l~~~~~pLv-~LL~S~~eiqyvvL~~I~~i~~~~p~lF~~~l 281 (1007)
.++-+++.+.+.+.+-+.++..+-..-.- ...-+.+++.|. +|-..+|++++.+|..+..+++.+...|...+
T Consensus 8 ~li~kATs~~~~~~Dw~~~l~icD~i~~~--~~~~kea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev 81 (140)
T PF00790_consen 8 ELIEKATSESLPSPDWSLILEICDLINSS--PDGAKEAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREV 81 (140)
T ss_dssp HHHHHHT-TTSSS--HHHHHHHHHHHHTS--TTHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHH
T ss_pred HHHHHHhCcCCCCCCHHHHHHHHHHHHcC--CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 56777888888888888888777654322 223455666665 45556899999999999999998877776554
No 173
>PRK15098 beta-D-glucoside glucohydrolase; Provisional
Probab=32.75 E-value=94 Score=40.04 Aligned_cols=61 Identities=18% Similarity=0.204 Sum_probs=41.3
Q ss_pred CCeEEEEEEEEeCCCCcee---eeEeeccccchhhhhhhhhhhccccccccCCCCCCcccCCcccccCCCCeeEEEEEEE
Q 001839 753 PQLVCLETFFENCSSETMS---EVTLVDEESHKALDLADLTLATTASSLTSQSDLPTLVPMEEITSLEPGQTMKRILEVR 829 (1007)
Q Consensus 753 ~~mv~v~l~f~N~s~~~i~---~i~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~f~~i~~l~p~~~~~~~~~id 829 (1007)
...+.|.++++|+++-+=+ -+-+..+.. +.. .....+..|..| .|+||++.++.+-|+
T Consensus 666 ~~~i~v~v~V~NtG~~~G~EVvQlYv~~~~~-----~~~-------------~P~k~L~gF~Kv-~L~pGes~~V~~~l~ 726 (765)
T PRK15098 666 DGKVTASVTVTNTGKREGATVVQLYLQDVTA-----SMS-------------RPVKELKGFEKI-MLKPGETQTVSFPID 726 (765)
T ss_pred CCeEEEEEEEEECCCCCccEEEEEeccCCCC-----CCC-------------CHHHhccCceeE-eECCCCeEEEEEeec
Confidence 3468899999999975433 344433321 110 122358999999 699999999999988
Q ss_pred cCC
Q 001839 830 FHH 832 (1007)
Q Consensus 830 F~~ 832 (1007)
..+
T Consensus 727 ~~~ 729 (765)
T PRK15098 727 IEA 729 (765)
T ss_pred HHH
Confidence 643
No 174
>cd07064 AlkD_like_1 A new structural DNA glycosylase containing HEAT-like repeats. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity. The known structures for members of this fa
Probab=32.61 E-value=1.1e+02 Score=32.95 Aligned_cols=62 Identities=16% Similarity=0.071 Sum_probs=45.2
Q ss_pred HHHHHhhcCCCChhHHHHHHHHHHHHhhcCchhhHhhHHHHHHHHhcCCChhHHHHHHHHHHHhC
Q 001839 14 LVAVGKCARDPSVFVRKCAANALPKLHELRQEEITSAIEEIVGILLNDRSPGVVGAAAAAFASIC 78 (1007)
Q Consensus 14 ~~aIkk~~~D~SPYVRKtAA~AI~Kly~ldpe~~~~~LieiL~~LL~D~~p~VvgsAv~Af~EIc 78 (1007)
...+.+-+.|.+.++||+|+.+-.+. ... .+.+.+.+++..++.|+.-.|-=+.-=+|.|+.
T Consensus 117 ~~~l~~W~~s~~~W~rR~ai~~~l~~--~~~-~~~~~l~~~~~~~~~d~e~fI~KAiGW~LRe~~ 178 (208)
T cd07064 117 EPVMDEWSTDENFWLRRTAILHQLKY--KEK-TDTDLLFEIILANLGSKEFFIRKAIGWALREYS 178 (208)
T ss_pred HHHHHHHHcCCcHHHHHHHHHHHHHH--HHc-cCHHHHHHHHHHhCCChHHHHHHHHHHHHHHHh
Confidence 45688899999999999999875542 111 234567778888888888777666666677765
No 175
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=32.36 E-value=2.2e+02 Score=28.91 Aligned_cols=73 Identities=15% Similarity=0.112 Sum_probs=51.5
Q ss_pred HHHHHhhcccccCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH-hhcC-CCCchhhHHHHHHHHHHHCCCcccccc
Q 001839 207 KLLLQCTSPLLWSHNSAVVLAAAGVHWIMSPKEDVKRIVKPLLF-ILRS-SGASKYVVLCNIQVFAKALPHLFVPHY 281 (1007)
Q Consensus 207 ~lLL~~~~pLLqS~NsAVVlaaa~l~~~lap~~~l~~~~~pLv~-LL~S-~~eiqyvvL~~I~~i~~~~p~lF~~~l 281 (1007)
.++-+++.+.|..-|-+..|+.+-.+=. +...-+.++++|-. |..+ ++++++.+|..+..+++.+...|..++
T Consensus 4 ~~IekATse~l~~~dw~~ileicD~In~--~~~~~k~a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~ei 78 (141)
T cd03565 4 QLIEKATDGSLQSEDWGLNMEICDIINE--TEDGPKDAVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLV 78 (141)
T ss_pred HHHHHHcCcCCCCcCHHHHHHHHHHHhC--CCCcHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHH
Confidence 4566788888888898999988876532 22233456666654 4333 577889899999999999987776543
No 176
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=32.19 E-value=67 Score=24.99 Aligned_cols=27 Identities=26% Similarity=0.185 Sum_probs=19.2
Q ss_pred HHHHHHhhcCCCChhHHHHHHHHHHHH
Q 001839 13 VLVAVGKCARDPSVFVRKCAANALPKL 39 (1007)
Q Consensus 13 v~~aIkk~~~D~SPYVRKtAA~AI~Kl 39 (1007)
++..+-+++.+.++-||+.|+-|+..|
T Consensus 13 ~i~~Lv~ll~~~~~~v~~~a~~al~nl 39 (41)
T PF00514_consen 13 GIPPLVQLLKSPDPEVQEEAAWALGNL 39 (41)
T ss_dssp HHHHHHHHTTSSSHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 455666777788888888888777654
No 177
>COG5593 Nucleic-acid-binding protein possibly involved in ribosomal biogenesis [Translation, ribosomal structure and biogenesis]
Probab=32.01 E-value=2.7e+02 Score=34.26 Aligned_cols=85 Identities=12% Similarity=0.170 Sum_probs=62.7
Q ss_pred ccccccceeee--------ccCCC-HHHHHHHHHHHHhccCCC--CHHHHHHHHHHhhccCChhHHHHHHHHHHHHHHhC
Q 001839 276 LFVPHYEDFFV--------SSSDS-YQSKALKLEILSSIVTES--SISSVFKEFQDYIRDPDRRFAADTVAAIGLCARKL 344 (1007)
Q Consensus 276 lF~~~l~~Ffv--------~~~Dp-~~IK~lKLeIL~~Lane~--Ni~~IL~EL~~Yv~d~D~~fv~~aI~AIG~~A~k~ 344 (1007)
+|+.|++.||. ++.|| .|||..-+...|.|-... --..+|+=+..-+.+.+..++.+|--.|-++-...
T Consensus 180 ~fesflk~l~fr~levle~ls~d~i~~Vk~qvv~~VydLL~a~peqe~nLl~L~INKlGDk~~kvsskasY~ilkLe~~h 259 (821)
T COG5593 180 IFESFLKNLRFRVLEVLEVLSHDPIQYVKKQVVRLVYDLLEARPEQEVNLLHLFINKLGDKRDKVSSKASYVILKLELLH 259 (821)
T ss_pred HHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHhhccchhhhhhhhhHHHHHHHhcC
Confidence 57777766554 56898 599999999998876544 33456666666666777778888888888888888
Q ss_pred cccHHHHHHHHHHHHH
Q 001839 345 PKMANTCVEGLLALIR 360 (1007)
Q Consensus 345 p~~a~~cl~~Ll~LLs 360 (1007)
|.+-.-+++.+.++.-
T Consensus 260 P~mk~VV~d~Iedf~f 275 (821)
T COG5593 260 PGMKEVVLDGIEDFYF 275 (821)
T ss_pred CchhHHHHhhhhHhee
Confidence 8888888888777654
No 178
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=31.27 E-value=98 Score=40.69 Aligned_cols=58 Identities=28% Similarity=0.318 Sum_probs=46.9
Q ss_pred CCCChhHHHHHHHHHHHHhhcCchh----hHhhHHHHHHHHhcCCChhHHHHHHHHHHHhCC
Q 001839 22 RDPSVFVRKCAANALPKLHELRQEE----ITSAIEEIVGILLNDRSPGVVGAAAAAFASICP 79 (1007)
Q Consensus 22 ~D~SPYVRKtAA~AI~Kly~ldpe~----~~~~LieiL~~LL~D~~p~VvgsAv~Af~EIcP 79 (1007)
.|+.|..|.-+++|+.+|++-.++. -++.-.|.|..+|.|.-|.|-+|||.||-...-
T Consensus 610 d~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~ 671 (1387)
T KOG1517|consen 610 DDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFLS 671 (1387)
T ss_pred CCccHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHHHhc
Confidence 3358999999999999999876532 334456778889999999999999999877653
No 179
>PF14631 FancD2: Fanconi anaemia protein FancD2 nuclease; PDB: 3S4W_B.
Probab=31.06 E-value=89 Score=42.98 Aligned_cols=127 Identities=17% Similarity=0.171 Sum_probs=81.0
Q ss_pred HHHHHhhcccccCCChHHHHHHHHHHHhcC--CHH-HHHHHHHHHHHhhcC--CCCchhhHHHHHHHHHHHCCCccccc-
Q 001839 207 KLLLQCTSPLLWSHNSAVVLAAAGVHWIMS--PKE-DVKRIVKPLLFILRS--SGASKYVVLCNIQVFAKALPHLFVPH- 280 (1007)
Q Consensus 207 ~lLL~~~~pLLqS~NsAVVlaaa~l~~~la--p~~-~l~~~~~pLv~LL~S--~~eiqyvvL~~I~~i~~~~p~lF~~~- 280 (1007)
.-||.-+.-||+|.++.|+--++.+|.++- -.. ..+.+++.|+.++.+ +.|+. .+|+.+..|+..+|+...+|
T Consensus 434 ~siL~la~~Ll~S~e~~v~~FG~~~Y~~lF~~fds~~qqeVv~~Lvthi~sg~~~ev~-~aL~vL~~L~~~~~~~l~~fa 512 (1426)
T PF14631_consen 434 PSILSLAQSLLRSKEPSVREFGSHLYKYLFKEFDSYCQQEVVGALVTHIGSGNSQEVD-AALDVLCELAEKNPSELQPFA 512 (1426)
T ss_dssp HHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHSS-HHHHHHHHHHHHHHHHH--HHHHH-HHHHHHHHHHHH-HHHHHHTH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHcCCcHHHHH-HHHHHHHHHHhccHHHHHHHH
Confidence 457777888999999998877777765542 123 245688999988844 35665 78999999999898755554
Q ss_pred --cceeeeccC--CCHHHHHHHHHHHHhccCC--CCHHHHHHH----HHHhhccCChhHHHHHHH
Q 001839 281 --YEDFFVSSS--DSYQSKALKLEILSSIVTE--SSISSVFKE----FQDYIRDPDRRFAADTVA 335 (1007)
Q Consensus 281 --l~~Ffv~~~--Dp~~IK~lKLeIL~~Lane--~Ni~~IL~E----L~~Yv~d~D~~fv~~aI~ 335 (1007)
++...=+.+ .+.+||++ .+||+.||-. .+...|-+| ++.++.+.+...++.-|.
T Consensus 513 ~~l~giLD~l~~Ls~~qiR~l-f~il~~La~~~~~~~s~i~del~ivIRKQLss~~~~~K~~GII 576 (1426)
T PF14631_consen 513 TFLKGILDYLDNLSLQQIRKL-FDILCTLAFSDSSSSSSIQDELHIVIRKQLSSSNPKYKRIGII 576 (1426)
T ss_dssp HHHHGGGGGGGG--HHHHHHH-HHHHHHHHHHHSS---HHHHHHHHHHHHHHT-SSHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHH-HHHHHHHhcCCcccchhhHHHHHHHHHHhhcCCcHHHHHHhHH
Confidence 332221122 25688888 8999998832 223456666 445666777766655443
No 180
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=30.91 E-value=1.4e+03 Score=30.14 Aligned_cols=94 Identities=22% Similarity=0.146 Sum_probs=51.8
Q ss_pred CCChhHHHHHHHHHHHHhhcCchhhHhhHHHHHHHHhcCC-ChhHHHHHHHHHHHhCCCCc-------cchHHHHH----
Q 001839 23 DPSVFVRKCAANALPKLHELRQEEITSAIEEIVGILLNDR-SPGVVGAAAAAFASICPNNF-------TLIGRNYR---- 90 (1007)
Q Consensus 23 D~SPYVRKtAA~AI~Kly~ldpe~~~~~LieiL~~LL~D~-~p~VvgsAv~Af~EIcP~rl-------dLihk~yr---- 90 (1007)
++.|-|||+|=-|+-.+- .|..--+.+|.-+-++. ++..-++|..+|..-|..+| ..++..-|
T Consensus 16 ~pdps~rk~aEr~L~~~e-----~q~~y~l~lL~Lv~~~~~d~~~r~aaav~fKN~iKr~W~~~~~~~~~i~~~~~e~ik 90 (960)
T KOG1992|consen 16 SPDPSVRKPAERALRSLE-----GQQNYPLLLLNLVANGQQDPQIRVAAAVYFKNYIKRNWIPAEDSPIKIIEEDREQIK 90 (960)
T ss_pred CCCCccCchHHHHHHHhc-----cCCCchHHHHHHHhccCcChhHHHHHHHHHHHHHHhccCcCCCCccccchhHHHHHH
Confidence 345889999988876442 12222334443333344 67777888889988875332 22332222
Q ss_pred -HHHHhCCCCChhhHHHHHHHHHHhhhhcccccc
Q 001839 91 -NLCQILPDVEEWGQILLIEILLRYVVASHGLVK 123 (1007)
Q Consensus 91 -kLc~~L~d~dEWgQv~iL~lL~rY~r~~~~~~k 123 (1007)
-++.++.....--|+.+=+.|.--+ ++.|++
T Consensus 91 slIv~lMl~s~~~iQ~qlseal~~Ig--~~DFP~ 122 (960)
T KOG1992|consen 91 SLIVTLMLSSPFNIQKQLSEALSLIG--KRDFPD 122 (960)
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHHHh--ccccch
Confidence 2333334444555777767666554 344544
No 181
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=29.94 E-value=1.2e+02 Score=29.02 Aligned_cols=72 Identities=11% Similarity=-0.007 Sum_probs=49.8
Q ss_pred HHHHhhcccccCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH-hhcCCCCchhhHHHHHHHHHHHCCCcccccc
Q 001839 208 LLLQCTSPLLWSHNSAVVLAAAGVHWIMSPKEDVKRIVKPLLF-ILRSSGASKYVVLCNIQVFAKALPHLFVPHY 281 (1007)
Q Consensus 208 lLL~~~~pLLqS~NsAVVlaaa~l~~~lap~~~l~~~~~pLv~-LL~S~~eiqyvvL~~I~~i~~~~p~lF~~~l 281 (1007)
++-+++.+-++..+...++..+.+...- ....+.+++.|.. |-..++.++|-+|..+..+++....-|..++
T Consensus 4 ~v~~AT~~~~~~p~~~~i~~i~d~~~~~--~~~~~~~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~i 76 (115)
T cd00197 4 TVEKATSNENMGPDWPLIMEICDLINET--NVGPKEAVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQEV 76 (115)
T ss_pred HHHHHcCCCCCCCCHHHHHHHHHHHHCC--CccHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHHHH
Confidence 4456666777777777777777765432 2345567777754 4445788999999999999988877666543
No 182
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=29.40 E-value=1e+02 Score=31.80 Aligned_cols=75 Identities=20% Similarity=0.275 Sum_probs=50.9
Q ss_pred HHHHhhcccccCCChHHHHHHH-H----HHHhcCCH-----H----HHHHHHHHHHHhhcCCCCchhhHHHHHHHHHHHC
Q 001839 208 LLLQCTSPLLWSHNSAVVLAAA-G----VHWIMSPK-----E----DVKRIVKPLLFILRSSGASKYVVLCNIQVFAKAL 273 (1007)
Q Consensus 208 lLL~~~~pLLqS~NsAVVlaaa-~----l~~~lap~-----~----~l~~~~~pLv~LL~S~~eiqyvvL~~I~~i~~~~ 273 (1007)
-.++.+...|+...+..+++++ . +|-++... + .+.+++.+++.++.. ....-.+|..+..+...+
T Consensus 67 ~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~p~l~Rei~tp~l~~~i~~ll~l~~~-~~~~~~~l~~L~~ll~~~ 145 (165)
T PF08167_consen 67 QWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGKPTLTREIATPNLPKFIQSLLQLLQD-SSCPETALDALATLLPHH 145 (165)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCchHHHHhhccHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHC
Confidence 3566777777776665444433 2 23333321 1 256677888888875 566778999999999999
Q ss_pred CCccccccce
Q 001839 274 PHLFVPHYED 283 (1007)
Q Consensus 274 p~lF~~~l~~ 283 (1007)
|..|.||...
T Consensus 146 ptt~rp~~~k 155 (165)
T PF08167_consen 146 PTTFRPFANK 155 (165)
T ss_pred CccccchHHH
Confidence 9999999653
No 183
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=28.51 E-value=1.9e+02 Score=33.41 Aligned_cols=65 Identities=26% Similarity=0.241 Sum_probs=44.9
Q ss_pred HHHHHhhcCCCChhHHHHHHHHHHHHhhcCch----hhHhhHHHHHHHHhcCCChhHHHHHHHHHHHhCCCC
Q 001839 14 LVAVGKCARDPSVFVRKCAANALPKLHELRQE----EITSAIEEIVGILLNDRSPGVVGAAAAAFASICPNN 81 (1007)
Q Consensus 14 ~~aIkk~~~D~SPYVRKtAA~AI~Kly~ldpe----~~~~~LieiL~~LL~D~~p~VvgsAv~Af~EIcP~r 81 (1007)
+..|-+.+.+.+|-|||.|+.-+.-+--- +- .....++..+.+|+.|..+ +.-|+.|+.++..+.
T Consensus 5 l~elv~ll~~~sP~v~~~AV~~l~~lt~~-~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~~ 73 (353)
T KOG2973|consen 5 LVELVELLHSLSPPVRKAAVEHLLGLTGR-GLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQKE 73 (353)
T ss_pred HHHHHHHhccCChHHHHHHHHHHhhcccc-chhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhhH
Confidence 34677889999999999998554433211 10 1224566777889999998 677888888876543
No 184
>PF06524 NOA36: NOA36 protein; InterPro: IPR010531 This family consists of several NOA36 proteins which contain 29 highly conserved cysteine residues. The function of this protein is unknown.; GO: 0008270 zinc ion binding, 0005634 nucleus
Probab=27.85 E-value=72 Score=35.59 Aligned_cols=11 Identities=9% Similarity=-0.124 Sum_probs=4.4
Q ss_pred cHHHHhhccCC
Q 001839 555 SLSQIVLHAAP 565 (1007)
Q Consensus 555 SLS~~~~~~~~ 565 (1007)
+=+|-+|+...
T Consensus 229 tR~hkyGRQ~~ 239 (314)
T PF06524_consen 229 TRSHKYGRQGQ 239 (314)
T ss_pred eecchhccccC
Confidence 33344444433
No 185
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=27.78 E-value=1.2e+02 Score=30.17 Aligned_cols=71 Identities=15% Similarity=0.312 Sum_probs=45.5
Q ss_pred CHHHHHHHHHHhh-ccCChhHHHHHHHHHHHHHHhCcccHH-----HHHHHHHHHHHhhhccccccCCCCCccchhhHHH
Q 001839 310 SISSVFKEFQDYI-RDPDRRFAADTVAAIGLCARKLPKMAN-----TCVEGLLALIRQELLTSDIESGNGEADVLIQSII 383 (1007)
Q Consensus 310 Ni~~IL~EL~~Yv-~d~D~~fv~~aI~AIG~~A~k~p~~a~-----~cl~~Ll~LLs~~~~~s~~~~~~~~~~vV~EsVv 383 (1007)
|--.+++.|..++ .+.|....+-|..-||..+..+|.-.. .+-..++.||.. .++.|-.||+.
T Consensus 40 ~~~~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h-----------~d~eVr~eAL~ 108 (119)
T PF11698_consen 40 NNFELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNH-----------EDPEVRYEALL 108 (119)
T ss_dssp GGGHHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS------------SSHHHHHHHHH
T ss_pred cccHHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcC-----------CCHHHHHHHHH
Confidence 3345666666776 344666666677788888888877443 223455666652 24568889998
Q ss_pred HHHHHHHc
Q 001839 384 SIKSIIKQ 391 (1007)
Q Consensus 384 vIk~Llq~ 391 (1007)
.++.++.+
T Consensus 109 avQklm~~ 116 (119)
T PF11698_consen 109 AVQKLMVN 116 (119)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 88888764
No 186
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=27.78 E-value=1.9e+02 Score=33.18 Aligned_cols=100 Identities=18% Similarity=0.181 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHhhcCCCChhHHHHHHHHHHHHhh----cCchh----hHhhHHHHHHHHhcCCChh-----HHHHHHHHH
Q 001839 8 VISPLVLVAVGKCARDPSVFVRKCAANALPKLHE----LRQEE----ITSAIEEIVGILLNDRSPG-----VVGAAAAAF 74 (1007)
Q Consensus 8 ~I~piv~~aIkk~~~D~SPYVRKtAA~AI~Kly~----ldpe~----~~~~LieiL~~LL~D~~p~-----VvgsAv~Af 74 (1007)
.+-+-++.+++|++.|+.|-|||.-..++..++. -+... -.+.|.+.+++-..-..+. ++|+++...
T Consensus 57 ~~~~~~~~~~~kGl~~kk~~vR~~w~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~p~~~~~~~~~~~a~~~l~ 136 (339)
T PF12074_consen 57 ELPKKVVDAFKKGLKDKKPPVRRAWLLCLGEALWESPNSDSLKFAEPFLPKLLQSLKEASANPLQSAQNGELVGAYVLLA 136 (339)
T ss_pred CCCHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHHHHHHhCCCCccccccHHHHHHHHH
Q ss_pred ------------------HHhCCCC-ccchHHHHHH---------HHHhCCCC-------------ChhhHHHH
Q 001839 75 ------------------ASICPNN-FTLIGRNYRN---------LCQILPDV-------------EEWGQILL 107 (1007)
Q Consensus 75 ------------------~EIcP~r-ldLihk~yrk---------Lc~~L~d~-------------dEWgQv~i 107 (1007)
.-.-|+. +=+-.|.|.| +++.|..+ ..|+|..|
T Consensus 137 ~~~~~~~~~~~~~~~~~~l~~~~kps~ll~~kvyskl~~~~d~~w~~~al~~~~~~~~~~~~~~~~~~~~~a~i 210 (339)
T PF12074_consen 137 LSSWKLDKIDSKNISFWSLALDPKPSFLLSEKVYSKLASEEDLCWLLRALEALLSDHPSELSSDKSSAWAQAFI 210 (339)
T ss_pred hccccchhhhhhhhhhhhhccCCCcchhcCHHHHhccCCHhHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHH
No 187
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=27.70 E-value=4.4e+02 Score=29.49 Aligned_cols=70 Identities=16% Similarity=0.265 Sum_probs=48.3
Q ss_pred HHHHHHhhccCChh--HHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhccccccCCCCCccchhhHHHHHHHHHHcC
Q 001839 315 FKEFQDYIRDPDRR--FAADTVAAIGLCARKLPKMANTCVEGLLALIRQELLTSDIESGNGEADVLIQSIISIKSIIKQD 392 (1007)
Q Consensus 315 L~EL~~Yv~d~D~~--fv~~aI~AIG~~A~k~p~~a~~cl~~Ll~LLs~~~~~s~~~~~~~~~~vV~EsVvvIk~Llq~~ 392 (1007)
+..|+.|+.+.+.+ .+..+++|++.++..-|.-.+.|++++..++... ++++..++|-.++ ..++..|
T Consensus 113 ~~~L~~li~~~~~~~yvR~aa~~aL~~l~~~~~~~Re~vi~~f~~ll~~~--------l~~~~~~~~~~Lv--~~~~dL~ 182 (249)
T PF06685_consen 113 IEPLKELIEDPDADEYVRMAAISALAFLVHEGPISREEVIQYFRELLNYF--------LERNPSFLWGSLV--ADICDLY 182 (249)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH--------hccCchHHHHHHH--HHHHhcC
Confidence 34455677666552 5567799999999999999999999999999742 1334445665543 4556666
Q ss_pred Cc
Q 001839 393 PS 394 (1007)
Q Consensus 393 P~ 394 (1007)
|.
T Consensus 183 ~~ 184 (249)
T PF06685_consen 183 PE 184 (249)
T ss_pred HH
Confidence 64
No 188
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=27.49 E-value=1.2e+02 Score=38.24 Aligned_cols=62 Identities=23% Similarity=0.144 Sum_probs=45.5
Q ss_pred hhHHHHHHHHhhcCCCChhHHHHHHHHHHHHhhcCchhhHhhHHHHHHHHh-cCCChhHHHHHH
Q 001839 9 ISPLVLVAVGKCARDPSVFVRKCAANALPKLHELRQEEITSAIEEIVGILL-NDRSPGVVGAAA 71 (1007)
Q Consensus 9 I~piv~~aIkk~~~D~SPYVRKtAA~AI~Kly~ldpe~~~~~LieiL~~LL-~D~~p~VvgsAv 71 (1007)
+..-+..++-+-+.|+-|-||.-|+.|+.++-. +|.+..-.+..++..++ +|.++-|-.+|+
T Consensus 123 vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~-d~~dee~~v~n~l~~liqnDpS~EVRRaaL 185 (892)
T KOG2025|consen 123 VFNKLNEKLLIRLKDREPNVRIQAVLALSRLQG-DPKDEECPVVNLLKDLIQNDPSDEVRRAAL 185 (892)
T ss_pred HHHHHHHHHHHHHhccCchHHHHHHHHHHHHhc-CCCCCcccHHHHHHHHHhcCCcHHHHHHHH
Confidence 445566788888999999999999999999764 33233334555566666 599999987764
No 189
>PF06524 NOA36: NOA36 protein; InterPro: IPR010531 This family consists of several NOA36 proteins which contain 29 highly conserved cysteine residues. The function of this protein is unknown.; GO: 0008270 zinc ion binding, 0005634 nucleus
Probab=27.38 E-value=60 Score=36.19 Aligned_cols=6 Identities=33% Similarity=0.241 Sum_probs=2.6
Q ss_pred CCcHHH
Q 001839 553 PGSLSQ 558 (1007)
Q Consensus 553 lGSLS~ 558 (1007)
+|.-|-
T Consensus 180 lGq~sC 185 (314)
T PF06524_consen 180 LGQYSC 185 (314)
T ss_pred ccchhh
Confidence 444443
No 190
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=27.35 E-value=5.9e+02 Score=31.39 Aligned_cols=71 Identities=8% Similarity=0.207 Sum_probs=50.6
Q ss_pred CCchhhHHHHHHHHHHHCCCccccccceeeeccCCCHHHHHHHHHHHHhccCCCCHHHHHHHHHHhhc-cCChhH
Q 001839 256 GASKYVVLCNIQVFAKALPHLFVPHYEDFFVSSSDSYQSKALKLEILSSIVTESSISSVFKEFQDYIR-DPDRRF 329 (1007)
Q Consensus 256 ~eiqyvvL~~I~~i~~~~p~lF~~~l~~Ffv~~~Dp~~IK~lKLeIL~~Lane~Ni~~IL~EL~~Yv~-d~D~~f 329 (1007)
+.+|..++..+..++..+|....+.+-.+|....++..||...+-+|... +++ ..+|+.+..++. +.+.++
T Consensus 494 ~~iR~~Av~Alr~~a~~~p~~v~~~l~~i~~n~~e~~EvRiaA~~~lm~t-~P~--~~~l~~ia~~l~~E~~~QV 565 (574)
T smart00638 494 TFIRLAAILALRNLAKRDPRKVQEVLLPIYLNRAEPPEVRMAAVLVLMET-KPS--VALLQRIAELLNKEPNLQV 565 (574)
T ss_pred HHHHHHHHHHHHHHHHhCchHHHHHHHHHHcCCCCChHHHHHHHHHHHhc-CCC--HHHHHHHHHHHhhcCcHHH
Confidence 46788888888888888999888888777777778888999999888863 222 334555555553 334443
No 191
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=26.95 E-value=3.4e+02 Score=33.03 Aligned_cols=97 Identities=16% Similarity=0.217 Sum_probs=69.2
Q ss_pred HHHHHHhhcCC-CChhHHHHHHHHHHHHhhcCchhhHhhHHHHHHHHh---cCCChhHHHHHHHHHH----HhCCCCccc
Q 001839 13 VLVAVGKCARD-PSVFVRKCAANALPKLHELRQEEITSAIEEIVGILL---NDRSPGVVGAAAAAFA----SICPNNFTL 84 (1007)
Q Consensus 13 v~~aIkk~~~D-~SPYVRKtAA~AI~Kly~ldpe~~~~~LieiL~~LL---~D~~p~VvgsAv~Af~----EIcP~rldL 84 (1007)
++..+-+-+.| .++--||-|.--|.|+..--|.--.+.-...+.+.| .|.++.|++.|.-+.. .+.|..
T Consensus 330 iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P~~--- 406 (516)
T KOG2956|consen 330 ILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHLPLQ--- 406 (516)
T ss_pred HHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCchh---
Confidence 34567778889 788888888888888888777322222233345555 5999999998877643 444543
Q ss_pred hHHHHHHHHHhCCCCChhhHHHHHHHHHHhh
Q 001839 85 IGRNYRNLCQILPDVEEWGQILLIEILLRYV 115 (1007)
Q Consensus 85 ihk~yrkLc~~L~d~dEWgQv~iL~lL~rY~ 115 (1007)
.+-.+|.+|...|+=--+.+|+|++|..
T Consensus 407 ---~I~~i~~~Ilt~D~~~~~~~iKm~Tkl~ 434 (516)
T KOG2956|consen 407 ---CIVNISPLILTADEPRAVAVIKMLTKLF 434 (516)
T ss_pred ---HHHHHhhHHhcCcchHHHHHHHHHHHHH
Confidence 4556777777788888899999999987
No 192
>PF13981 SopA: SopA-like central domain; PDB: 3NB2_B 3NAW_B 3SQV_B 2QZA_B 3SY2_B 2QYU_A.
Probab=26.76 E-value=1.5e+02 Score=30.08 Aligned_cols=90 Identities=14% Similarity=0.104 Sum_probs=54.5
Q ss_pred hHHhhhhhccccccCCCCccccHHHHHHHHHHhhccC-------cHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHH
Q 001839 411 ARVMIIWMVGEYSSVGVKIPRMLTTVLKYLAWCFKSE-------AVETKLQILNTTIKVLLCAKGGDMWTITRLFSYLLE 483 (1007)
Q Consensus 411 ArAsIIWLLGEY~~~~e~ip~ia~DvLR~l~k~F~~E-------~~~VKlqILtlaaKL~~~~p~e~~~~i~~L~qyvLe 483 (1007)
...++.-++++.+-+.+ |.| ...++.+.++|..- ......++|+++.+.|-++|+-+..--+.+.| ++-
T Consensus 25 ~~~sL~~i~s~~pYi~d--~~I-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~F~r~pelm~~~N~~FIQ-~i~ 100 (135)
T PF13981_consen 25 VALSLNDILSKPPYIND--PEI-ASWLQKLCENFFDNFNLQLMNKDKLNQAILNFFIDRFSRQPELMISNNGAFIQ-LIA 100 (135)
T ss_dssp HHHHHHHHHTSTTTTC---HHH-HHHHHHHHHHHHHHHHHHC---HHHHHHCHHHHHHHHHHTTTHHHHTHHHHHH-HHH
T ss_pred hHhHHHHHhccCcccCC--HHH-HHHHHHHHHHHHHHHHHHHhhccccCHHHHHHHHHHHHhCHhHHHHcccHHHH-HHH
Confidence 44556677777665432 332 24555555544322 22344589999999999999754322334455 444
Q ss_pred HHccCCChhHHhHHHHHHHHc
Q 001839 484 LAECDLNYDVRDRARFFKKLF 504 (1007)
Q Consensus 484 Lak~D~n~DVRDRArfy~~LL 504 (1007)
.|.+..+..++.+|+.++.-.
T Consensus 101 ~~~~~~~~~~k~~A~~LY~~Y 121 (135)
T PF13981_consen 101 QAMTHGDDEIKQKARDLYKKY 121 (135)
T ss_dssp HHCC-TSCCCHHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHH
Confidence 577777889999998766544
No 193
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=26.68 E-value=5.9e+02 Score=33.69 Aligned_cols=171 Identities=14% Similarity=0.187 Sum_probs=101.7
Q ss_pred hhHHHHHHHHHHHC-CCccccc---cceeeec------cCCCHHHHHHHHHHHHhccC----CCCHHHHHHHH-HHhh--
Q 001839 260 YVVLCNIQVFAKAL-PHLFVPH---YEDFFVS------SSDSYQSKALKLEILSSIVT----ESSISSVFKEF-QDYI-- 322 (1007)
Q Consensus 260 yvvL~~I~~i~~~~-p~lF~~~---l~~Ffv~------~~Dp~~IK~lKLeIL~~Lan----e~Ni~~IL~EL-~~Yv-- 322 (1007)
-.++..+.+++.++ ++.|.+. +-..|-+ .+++.--|.=.|.++.+|+. .+-+...++-+ ..|+
T Consensus 390 ~Aa~~~l~~~~~KR~ke~l~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~hVfP 469 (1010)
T KOG1991|consen 390 TAALDFLTTLVSKRGKETLPKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQMEYFLVNHVFP 469 (1010)
T ss_pred HHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHHHhhH
Confidence 35777888888888 6666653 3334432 24455566667777777763 23333444432 2233
Q ss_pred --ccCChhHHHHHHHHHHHHH-HhCc--ccHHHHHHHHHHHHHhhhccccccCCCCCccchhhHHHHHHHHHHcCCchHH
Q 001839 323 --RDPDRRFAADTVAAIGLCA-RKLP--KMANTCVEGLLALIRQELLTSDIESGNGEADVLIQSIISIKSIIKQDPSCHE 397 (1007)
Q Consensus 323 --~d~D~~fv~~aI~AIG~~A-~k~p--~~a~~cl~~Ll~LLs~~~~~s~~~~~~~~~~vV~EsVvvIk~Llq~~P~~~~ 397 (1007)
++.-=-++++|.--+++.+ ..++ ......++.-.+.|.. +.+-.|-.|+...|+-+|..++..++
T Consensus 470 ~f~s~~g~Lrarac~vl~~~~~~df~d~~~l~~ale~t~~~l~~----------d~~lPV~VeAalALq~fI~~~~~~~e 539 (1010)
T KOG1991|consen 470 EFQSPYGYLRARACWVLSQFSSIDFKDPNNLSEALELTHNCLLN----------DNELPVRVEAALALQSFISNQEQADE 539 (1010)
T ss_pred hhcCchhHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHhcc----------CCcCchhhHHHHHHHHHHhcchhhhh
Confidence 2222257888888888887 5554 4555666666665542 11224788999999999999887655
Q ss_pred H-----------HHHhhhccCchhhHHhhh-hhccccccCCCCccccHHHHHHHHHHhh
Q 001839 398 K-----------LFRSLDSIKVPEARVMII-WMVGEYSSVGVKIPRMLTTVLKYLAWCF 444 (1007)
Q Consensus 398 ~-----------L~~~ld~I~~p~ArAsII-WLLGEY~~~~e~ip~ia~DvLR~l~k~F 444 (1007)
+ |.++.... +.+....++ =++++|++. ..| +|.++...++..|
T Consensus 540 ~~~~hvp~~mq~lL~L~ne~-End~Lt~vme~iV~~fseE--lsP-fA~eL~q~La~~F 594 (1010)
T KOG1991|consen 540 KVSAHVPPIMQELLKLSNEV-ENDDLTNVMEKIVCKFSEE--LSP-FAVELCQNLAETF 594 (1010)
T ss_pred hHhhhhhHHHHHHHHHHHhc-chhHHHHHHHHHHHHHHHh--hch-hHHHHHHHHHHHH
Confidence 3 22222222 233344443 688999862 334 4777766666665
No 194
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=26.65 E-value=1.6e+03 Score=29.64 Aligned_cols=209 Identities=15% Similarity=0.085 Sum_probs=117.0
Q ss_pred ccceeeeccCCCHHHHHHHHHHHHhccCC------C---CHH-HHHHHHHHhhccCChhHHHHHHHHHHHHHHhCcccH-
Q 001839 280 HYEDFFVSSSDSYQSKALKLEILSSIVTE------S---SIS-SVFKEFQDYIRDPDRRFAADTVAAIGLCARKLPKMA- 348 (1007)
Q Consensus 280 ~l~~Ffv~~~Dp~~IK~lKLeIL~~Lane------~---Ni~-~IL~EL~~Yv~d~D~~fv~~aI~AIG~~A~k~p~~a- 348 (1007)
+...-|-..+++. -+.++..|-..++|. + |+. +.++|-..++.|.-..++..+++.+.+++.+-.+.+
T Consensus 685 ~~eQ~~n~~t~e~-~~Ll~~~I~~~lvn~ptt~rsd~~~s~~~e~~qeai~sl~d~qvpik~~gL~~l~~l~e~r~~~~~ 763 (982)
T KOG4653|consen 685 LKEQLFNLGTREI-NPLLQQSIDSLLVNIPTTRRSDRRYSVDIEPLQEAISSLHDDQVPIKGYGLQMLRHLIEKRKKATL 763 (982)
T ss_pred hHHHHhhcccccc-chHHhccchhhhccCCCCccccccccccHHHHHHHHHHhcCCcccchHHHHHHHHHHHHhcchhhh
Confidence 3333333344432 233335566666652 1 222 357788888888888899999999999998543322
Q ss_pred ---HHHHHHHHHHHHhhhccccccCCCCCccchhhHHHHHHHHHHcCCchHHH-HHHhhhc----------cCchhhHHh
Q 001839 349 ---NTCVEGLLALIRQELLTSDIESGNGEADVLIQSIISIKSIIKQDPSCHEK-LFRSLDS----------IKVPEARVM 414 (1007)
Q Consensus 349 ---~~cl~~Ll~LLs~~~~~s~~~~~~~~~~vV~EsVvvIk~Llq~~P~~~~~-L~~~ld~----------I~~p~ArAs 414 (1007)
..++...++.|+. .+.+|---+|..+-.|-..||+..-. |.+..++ +.+.+|.-.
T Consensus 764 ~~~ekvl~i~ld~Lkd-----------edsyvyLnaI~gv~~Lcevy~e~il~dL~e~Y~s~k~k~~~d~~lkVGEai~k 832 (982)
T KOG4653|consen 764 IQGEKVLAIALDTLKD-----------EDSYVYLNAIRGVVSLCEVYPEDILPDLSEEYLSEKKKLQTDYRLKVGEAILK 832 (982)
T ss_pred hhHHHHHHHHHHHhcc-----------cCceeeHHHHHHHHHHHHhcchhhHHHHHHHHHhcccCCCccceehHHHHHHH
Confidence 4778888888873 24443222333222344458875433 5553322 223344444
Q ss_pred hhhhccccccCCCCccccHHHHHHHHHHhhccCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHccCCChhHH
Q 001839 415 IIWMVGEYSSVGVKIPRMLTTVLKYLAWCFKSEAVETKLQILNTTIKVLLCAKGGDMWTITRLFSYLLELAECDLNYDVR 494 (1007)
Q Consensus 415 IIWLLGEY~~~~e~ip~ia~DvLR~l~k~F~~E~~~VKlqILtlaaKL~~~~p~e~~~~i~~L~qyvLeLak~D~n~DVR 494 (1007)
++-=.||-+. .| -.-++.-+....-+-+.+-|+.-+..+.-+.-......++.+...++-++.+++-|..+=+|
T Consensus 833 ~~qa~Gel~~-----~y-~~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~vsd~~~ev~~~Il~l~~~d~s~~vR 906 (982)
T KOG4653|consen 833 VAQALGELVF-----KY-KAVLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQVSDFFHEVLQLILSLETTDGSVLVR 906 (982)
T ss_pred HHHHhccHHH-----HH-HHHHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHccCCchhhH
Confidence 4444444331 11 11122222222222234567777776666655444333346678888999999999999998
Q ss_pred hHHHHHHHHccC
Q 001839 495 DRARFFKKLFSH 506 (1007)
Q Consensus 495 DRArfy~~LL~~ 506 (1007)
--|.-..+.+-.
T Consensus 907 RaAv~li~~lL~ 918 (982)
T KOG4653|consen 907 RAAVHLLAELLN 918 (982)
T ss_pred HHHHHHHHHHHh
Confidence 877766665544
No 195
>PF01345 DUF11: Domain of unknown function DUF11; InterPro: IPR001434 This group of sequences is represented by a conserved region of about 53 amino acids shared between regions, usually repeated, of proteins from a small number of phylogenetically distant prokaryotes. Examples include a 132-residue region found repeated in three of the five longest proteins of Bacillus anthracis, a 131-residue repeat in a cell wall-anchored protein of Enterococcus faecalis (Streptococcus faecalis), and a 120-residue repeat in Methanobacterium thermoautotrophicum. A similar region is found in some Chlamydia trachomatis outer membrane proteins. In C. trachomatis, three cysteine-rich proteins (also believed to be lipoproteins), MOMP, OMP6 and OMP3, make up the extracellular matrix of the outer membrane []. They are involved in the essential structural integrity of both the elementary body (EB) and recticulate body (RB) phase. They are thought to be involved in porin formation and, as these bacteria lack the peptidoglycan layer common to most Gram-negative microbes, such proteins are highly important in the pathogenicity of the organism.; GO: 0005727 extrachromosomal circular DNA
Probab=26.59 E-value=76 Score=28.11 Aligned_cols=30 Identities=13% Similarity=0.068 Sum_probs=26.1
Q ss_pred CeEEEEEEEEeCCCCceeeeEeeccccchhhhhh
Q 001839 754 QLVCLETFFENCSSETMSEVTLVDEESHKALDLA 787 (1007)
Q Consensus 754 ~mv~v~l~f~N~s~~~i~~i~i~~~~~~~~~~g~ 787 (1007)
.-+...|+++|.+..+..+|.|.+. +|+|+
T Consensus 41 d~v~ytitvtN~G~~~a~nv~v~D~----lp~g~ 70 (76)
T PF01345_consen 41 DTVTYTITVTNTGPAPATNVVVTDT----LPAGL 70 (76)
T ss_pred CEEEEEEEEEECCCCeeEeEEEEEc----CCCCC
Confidence 5566789999999999999999985 78886
No 196
>KOG1684 consensus Enoyl-CoA hydratase [Lipid transport and metabolism]
Probab=26.52 E-value=2.1e+02 Score=33.59 Aligned_cols=65 Identities=22% Similarity=0.417 Sum_probs=47.0
Q ss_pred CCCHHHHHHHHHHHHhccCCCCHHHHHHHHHHhhccCC-hhHHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Q 001839 289 SDSYQSKALKLEILSSIVTESSISSVFKEFQDYIRDPD-RRFAADTVAAIGLCARKLPKMANTCVEGLLALIR 360 (1007)
Q Consensus 289 ~Dp~~IK~lKLeIL~~Lane~Ni~~IL~EL~~Yv~d~D-~~fv~~aI~AIG~~A~k~p~~a~~cl~~Ll~LLs 360 (1007)
.|+.+....+++++-.--..+.++.|+++|++|-.+.+ .+++.++.+.|.. ..| .-|.+-+++++
T Consensus 256 ~~~~~~~~~~~~~i~~~Fs~~tVeeIie~lk~~q~~~~~~ewak~tlk~L~k---~SP----tSLkvT~r~i~ 321 (401)
T KOG1684|consen 256 KDESFSLSLKLDVINKCFSANTVEEIIEALKNYQQSADGSEWAKETLKTLKK---MSP----TSLKVTLRQIR 321 (401)
T ss_pred CCccccchhhHHHHHHhhccccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhh---cCC----chHHHHHHHHH
Confidence 34555666799999998889999999999999975433 3788888887754 333 34455555555
No 197
>KOG2236 consensus Uncharacterized conserved protein [Function unknown]
Probab=26.49 E-value=68 Score=38.43 Aligned_cols=19 Identities=16% Similarity=0.076 Sum_probs=8.8
Q ss_pred CcHHHHhhccCCC-CccCCC
Q 001839 554 GSLSQIVLHAAPG-YEPLPK 572 (1007)
Q Consensus 554 GSLS~~~~~~~~g-Y~~LP~ 572 (1007)
-+|+..++..+.+ -.++|+
T Consensus 71 ~~l~~~i~~~~e~~~~~~~~ 90 (483)
T KOG2236|consen 71 PPLAAKIEMKAEDGSVDQPD 90 (483)
T ss_pred ccchhhhccccccCcccccc
Confidence 3455555554443 334443
No 198
>COG5406 Nucleosome binding factor SPN, SPT16 subunit [Transcription / DNA replication, recombination, and repair / Chromatin structure and dynamics]
Probab=26.28 E-value=56 Score=40.37 Aligned_cols=21 Identities=14% Similarity=0.077 Sum_probs=14.1
Q ss_pred cCCCChhHHHHHHHHHHHHhh
Q 001839 21 ARDPSVFVRKCAANALPKLHE 41 (1007)
Q Consensus 21 ~~D~SPYVRKtAA~AI~Kly~ 41 (1007)
..|.+||-.-+|.|...==|.
T Consensus 39 s~d~npyqk~taLh~wLLgYE 59 (1001)
T COG5406 39 SQDVNPYQKNTALHIWLLGYE 59 (1001)
T ss_pred ccccChhhhhhHHHHHHHhcc
Confidence 467788877777776654443
No 199
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=26.04 E-value=1.3e+03 Score=30.32 Aligned_cols=131 Identities=17% Similarity=0.207 Sum_probs=81.4
Q ss_pred HHHHHHHhhc---CCCCchhhHHHHHHHHHHHCCCccccccceeeeccCCCHHHHHHHHHHHHh-ccCCCCHHHHHHHHH
Q 001839 244 IVKPLLFILR---SSGASKYVVLCNIQVFAKALPHLFVPHYEDFFVSSSDSYQSKALKLEILSS-IVTESSISSVFKEFQ 319 (1007)
Q Consensus 244 ~~~pLv~LL~---S~~eiqyvvL~~I~~i~~~~p~lF~~~l~~Ffv~~~Dp~~IK~lKLeIL~~-Lane~Ni~~IL~EL~ 319 (1007)
-.+||+.-|. .++|+--++|+.+..+....- |=--..|++..-.+=+.|--. +-+++||.-++.=+.
T Consensus 62 Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd---------~~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e 132 (970)
T KOG0946|consen 62 GMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDD---------SPEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLE 132 (970)
T ss_pred ccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCc---------chhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHH
Confidence 3478887774 368877778998877765432 000113344333344433332 236888888887444
Q ss_pred HhhccCChhHHHHHHHHHHHHHHhCcccHHHH-------HHHHHHHHHhhhccccccCCCCCccchhhHHHHHHHHHHcC
Q 001839 320 DYIRDPDRRFAADTVAAIGLCARKLPKMANTC-------VEGLLALIRQELLTSDIESGNGEADVLIQSIISIKSIIKQD 392 (1007)
Q Consensus 320 ~Yv~d~D~~fv~~aI~AIG~~A~k~p~~a~~c-------l~~Ll~LLs~~~~~s~~~~~~~~~~vV~EsVvvIk~Llq~~ 392 (1007)
+ .|..+++.+|+-|..+-..-|.-...| +..|+.+|.- ..+.+-.++|.-|+.+.+-+
T Consensus 133 ~----~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~D-----------srE~IRNe~iLlL~eL~k~n 197 (970)
T KOG0946|consen 133 E----FDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRD-----------SREPIRNEAILLLSELVKDN 197 (970)
T ss_pred h----hchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhh-----------hhhhhchhHHHHHHHHHccC
Confidence 4 477888889998877655555544433 5667777762 23445567888888888888
Q ss_pred CchHHH
Q 001839 393 PSCHEK 398 (1007)
Q Consensus 393 P~~~~~ 398 (1007)
|..++-
T Consensus 198 ~~IQKl 203 (970)
T KOG0946|consen 198 SSIQKL 203 (970)
T ss_pred chHHHH
Confidence 875543
No 200
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=25.56 E-value=59 Score=41.07 Aligned_cols=54 Identities=28% Similarity=0.240 Sum_probs=25.3
Q ss_pred CCCChhHHHHHHHHHHHHhhcCchhhHhhHHHHHHHHhcCCChhHHHHHHHHHHHhCC
Q 001839 22 RDPSVFVRKCAANALPKLHELRQEEITSAIEEIVGILLNDRSPGVVGAAAAAFASICP 79 (1007)
Q Consensus 22 ~D~SPYVRKtAA~AI~Kly~ldpe~~~~~LieiL~~LL~D~~p~VvgsAv~Af~EIcP 79 (1007)
+|.+.-|||+|+.||.=+.--|| + ++..+++.|-...+|-|-..|.+|+-=.|.
T Consensus 565 sD~nDDVrRaAVialGFVl~~dp-~---~~~s~V~lLses~N~HVRyGaA~ALGIaCA 618 (929)
T KOG2062|consen 565 SDVNDDVRRAAVIALGFVLFRDP-E---QLPSTVSLLSESYNPHVRYGAAMALGIACA 618 (929)
T ss_pred cccchHHHHHHHHHheeeEecCh-h---hchHHHHHHhhhcChhhhhhHHHHHhhhhc
Confidence 45555555555555553333344 2 223333222223455555555555555553
No 201
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=25.48 E-value=85 Score=38.84 Aligned_cols=61 Identities=16% Similarity=0.156 Sum_probs=47.0
Q ss_pred HHHhhcCCCChhHHHHHHHHHHHHhhcCchhhHhhHHHHHHHHhcCCChhHHHHHHHHHHHhCCC
Q 001839 16 AVGKCARDPSVFVRKCAANALPKLHELRQEEITSAIEEIVGILLNDRSPGVVGAAAAAFASICPN 80 (1007)
Q Consensus 16 aIkk~~~D~SPYVRKtAA~AI~Kly~ldpe~~~~~LieiL~~LL~D~~p~VvgsAv~Af~EIcP~ 80 (1007)
-++.++.|+.--||++++-+|+.-|.... + ..+++++++|=-.++ .|...|+-+|.+.-|+
T Consensus 241 l~ewgl~dRe~sv~~a~~d~ia~~w~~~~-d--~~lveLle~lDvSr~-sv~v~aik~~F~~R~D 301 (885)
T COG5218 241 LMEWGLLDREFSVKGALVDAIASAWRIPE-D--LRLVELLEFLDVSRR-SVLVAAIKGVFEKRPD 301 (885)
T ss_pred hhhhcchhhhhhHHHHHHHHHHHHhcccc-c--ccHHHHHHHHhhhhH-HHHHHHHHHHHhhccc
Confidence 67899999999999999999996665433 2 457787776544444 4889999999998766
No 202
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=25.31 E-value=3.2e+02 Score=29.91 Aligned_cols=89 Identities=15% Similarity=0.132 Sum_probs=55.9
Q ss_pred hhhhHHHHHHHHh---hcC--CCChhHHHHHHHHHHHHhhcCchhhHhhHHHHHHHHh-cCCChhHHHHHHHHHHHhCCC
Q 001839 7 HVISPLVLVAVGK---CAR--DPSVFVRKCAANALPKLHELRQEEITSAIEEIVGILL-NDRSPGVVGAAAAAFASICPN 80 (1007)
Q Consensus 7 p~I~piv~~aIkk---~~~--D~SPYVRKtAA~AI~Kly~ldpe~~~~~LieiL~~LL-~D~~p~VvgsAv~Af~EIcP~ 80 (1007)
+.+-+++...+.+ ... +....+.-..|.++.-+...+| +.-.+++..|..+| .+.++.+.+.|+-++..+|+.
T Consensus 74 ~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p-~~g~~ll~~ls~~L~~~~~~~~~alale~l~~Lc~~ 152 (234)
T PF12530_consen 74 PFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRP-DHGVDLLPLLSGCLNQSCDEVAQALALEALAPLCEA 152 (234)
T ss_pred HHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhCh-hhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHH
Confidence 4444555553333 223 3333344444556666667788 46677888889999 788999999999999999976
Q ss_pred CccchHHHHHHHHHhC
Q 001839 81 NFTLIGRNYRNLCQIL 96 (1007)
Q Consensus 81 rldLihk~yrkLc~~L 96 (1007)
.+==+.+..+-|-..|
T Consensus 153 ~vvd~~s~w~vl~~~l 168 (234)
T PF12530_consen 153 EVVDFYSAWKVLQKKL 168 (234)
T ss_pred hhccHHHHHHHHHHhc
Confidence 5322333444444444
No 203
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=25.08 E-value=1.7e+03 Score=29.49 Aligned_cols=107 Identities=20% Similarity=0.154 Sum_probs=74.1
Q ss_pred hhHHHHHHHHhhcCCC-ChhHHHHHHHHHHHHhhcCc---hhhHhhHHHHHHHHhcCCChhHHHHHHHHHHHhCCCC--c
Q 001839 9 ISPLVLVAVGKCARDP-SVFVRKCAANALPKLHELRQ---EEITSAIEEIVGILLNDRSPGVVGAAAAAFASICPNN--F 82 (1007)
Q Consensus 9 I~piv~~aIkk~~~D~-SPYVRKtAA~AI~Kly~ldp---e~~~~~LieiL~~LL~D~~p~VvgsAv~Af~EIcP~r--l 82 (1007)
...+++..++.++... +|.-=-.|..+|+|.-.-.+ .-....+...+..+.-|..|.|..+|+.+|.-.|... .
T Consensus 446 ~l~~l~~~~~~~l~~~e~P~Ll~Ra~~~i~~fs~~~~~~~~~~~~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~~~~vl~ 525 (1005)
T KOG2274|consen 446 KLIELTIMIDNGLVYQESPFLLLRAFLTISKFSSSTVINPQLLQHFLNATVNALTMDVPPPVKISAVRAFCGYCKVKVLL 525 (1005)
T ss_pred HHHHHHHHHHhhcccccCHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHhhccCCCCchhHHHHHHHHhccCceecc
Confidence 3445555666655443 66555588899998776543 1122334445555667999999999999999999433 3
Q ss_pred cchHHHHHHHHHhCCCCChhhHHHHHHHHHHhh
Q 001839 83 TLIGRNYRNLCQILPDVEEWGQILLIEILLRYV 115 (1007)
Q Consensus 83 dLihk~yrkLc~~L~d~dEWgQv~iL~lL~rY~ 115 (1007)
.+..+..+-|.++..+..+=.-..+|+.|..-+
T Consensus 526 ~~~p~ild~L~qlas~~s~evl~llmE~Ls~vv 558 (1005)
T KOG2274|consen 526 SLQPMILDGLLQLASKSSDEVLVLLMEALSSVV 558 (1005)
T ss_pred ccchHHHHHHHHHcccccHHHHHHHHHHHHHHh
Confidence 456667788888888888877788888887665
No 204
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=24.87 E-value=2.5e+02 Score=33.36 Aligned_cols=86 Identities=14% Similarity=0.083 Sum_probs=63.4
Q ss_pred hhhHHHHHHHHhhcCCCChhHHHHHHHHHHHHhhcCchh----hHhhHHHHHHHHhcCCChhHHHHHHHHHHHhCCCCcc
Q 001839 8 VISPLVLVAVGKCARDPSVFVRKCAANALPKLHELRQEE----ITSAIEEIVGILLNDRSPGVVGAAAAAFASICPNNFT 83 (1007)
Q Consensus 8 ~I~piv~~aIkk~~~D~SPYVRKtAA~AI~Kly~ldpe~----~~~~LieiL~~LL~D~~p~VvgsAv~Af~EIcP~rld 83 (1007)
.++|.++...+ ..+.-+|-.-..|+.-+.+--|.. +.+.|..++-+-|.=.++.|..+++..+..+..+.-+
T Consensus 323 ~~~p~L~~~~~----~~~~~~k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~~~ 398 (415)
T PF12460_consen 323 QVLPKLLEGFK----EADDEIKSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEAPE 398 (415)
T ss_pred HHHHHHHHHHh----hcChhhHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCHH
Confidence 34555554444 444447777788888888777743 5566777777777767788999999999999988888
Q ss_pred chHHHHHHHHHhCC
Q 001839 84 LIGRNYRNLCQILP 97 (1007)
Q Consensus 84 Lihk~yrkLc~~L~ 97 (1007)
++..|...|+..|.
T Consensus 399 ~i~~hl~sLI~~LL 412 (415)
T PF12460_consen 399 LISEHLSSLIPRLL 412 (415)
T ss_pred HHHHHHHHHHHHHH
Confidence 88888888877654
No 205
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=24.28 E-value=7.6e+02 Score=32.37 Aligned_cols=129 Identities=15% Similarity=0.209 Sum_probs=77.9
Q ss_pred cccccCCChHHHHHHHHHHH--hcCCHHHHHHHHHHHHHhhcCCCCchhhHHHHHH---HHHHHCCCccccccceeeecc
Q 001839 214 SPLLWSHNSAVVLAAAGVHW--IMSPKEDVKRIVKPLLFILRSSGASKYVVLCNIQ---VFAKALPHLFVPHYEDFFVSS 288 (1007)
Q Consensus 214 ~pLLqS~NsAVVlaaa~l~~--~lap~~~l~~~~~pLv~LL~S~~eiqyvvL~~I~---~i~~~~p~lF~~~l~~Ffv~~ 288 (1007)
.|+.--++.|+ +.-++++= +-++...-.++....+..|.. +-.||-|..|. .+|..+|+-.-|.+..||-..
T Consensus 738 d~qvpik~~gL-~~l~~l~e~r~~~~~~~~ekvl~i~ld~Lkd--edsyvyLnaI~gv~~Lcevy~e~il~dL~e~Y~s~ 814 (982)
T KOG4653|consen 738 DDQVPIKGYGL-QMLRHLIEKRKKATLIQGEKVLAIALDTLKD--EDSYVYLNAIRGVVSLCEVYPEDILPDLSEEYLSE 814 (982)
T ss_pred CCcccchHHHH-HHHHHHHHhcchhhhhhHHHHHHHHHHHhcc--cCceeeHHHHHHHHHHHHhcchhhHHHHHHHHHhc
Confidence 34444444444 33456654 334445556777777777764 33466666666 788888877777777777655
Q ss_pred CCCH--HHHHHHHHHHHhccCCCC------HHHHHHHHHHhhccCChhHHHHHHHHHHHHHHhCc
Q 001839 289 SDSY--QSKALKLEILSSIVTESS------ISSVFKEFQDYIRDPDRRFAADTVAAIGLCARKLP 345 (1007)
Q Consensus 289 ~Dp~--~IK~lKLeIL~~Lane~N------i~~IL~EL~~Yv~d~D~~fv~~aI~AIG~~A~k~p 345 (1007)
++-. .-+.+-=|.+.+++-..+ ...|+.=+..=++++|..+++-+...+|.|.+...
T Consensus 815 k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a 879 (982)
T KOG4653|consen 815 KKKLQTDYRLKVGEAILKVAQALGELVFKYKAVLINTFLSGVREPDHEFRASSLANLGQLCQLLA 879 (982)
T ss_pred ccCCCccceehHHHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHh
Confidence 4421 122222255555544332 13456666666788888899999999999877654
No 206
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=24.03 E-value=6.7e+02 Score=32.84 Aligned_cols=192 Identities=17% Similarity=0.058 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHhhcCCCChhHHHHHHHHHHHHhhcCc--hh--hHhhHHHHHHHHhcCCChhHHHHHHHHHHHhC----C
Q 001839 8 VISPLVLVAVGKCARDPSVFVRKCAANALPKLHELRQ--EE--ITSAIEEIVGILLNDRSPGVVGAAAAAFASIC----P 79 (1007)
Q Consensus 8 ~I~piv~~aIkk~~~D~SPYVRKtAA~AI~Kly~ldp--e~--~~~~LieiL~~LL~D~~p~VvgsAv~Af~EIc----P 79 (1007)
.|++=+...+...+.|+.+==||.|+-.+.+...-.. .. ..+.+--.+...+.|.+..|+..|+..+..|| +
T Consensus 249 di~~ki~~~l~t~~~s~~WK~R~Eale~l~~~l~e~~~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~ 328 (815)
T KOG1820|consen 249 DILSKITKNLETEMLSKKWKDRKEALEELVAILEEAKKEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRP 328 (815)
T ss_pred hhhhhcChHHHHhhhccchHHHHHHHHHHHHHHhccccccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcch
Q ss_pred CCccchHHHHHHHHHhCCCCChhhHHHHHHHHHHhhhhcccccchhhhhhhhhcccCCCcccccccccccccCCCCCCcc
Q 001839 80 NNFTLIGRNYRNLCQILPDVEEWGQILLIEILLRYVVASHGLVKESIMSSLLCIESSHSEKDVFDVNVALEDNGIPSRTY 159 (1007)
Q Consensus 80 ~rldLihk~yrkLc~~L~d~dEWgQv~iL~lL~rY~r~~~~~~kp~~~f~~~~~~~~~~~~~~~~~~~~l~~q~~~~~~~ 159 (1007)
.-..+....+-.|+..+.+.-.--.-.++..+-+|+-+.+
T Consensus 329 ~~~~~~~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns~~---------------------------------------- 368 (815)
T KOG1820|consen 329 LFRKYAKNVFPSLLDRLKEKKSELRDALLKALDAILNSTP---------------------------------------- 368 (815)
T ss_pred hhHHHHHhhcchHHHHhhhccHHHHHHHHHHHHHHHhccc----------------------------------------
Q ss_pred chhhhhhhccccccccccccccCCCcccccccccCccccCCCCChhHHHHHHhhcccccCCChHHHHHHHHHHHhcC---
Q 001839 160 DSELVNLVSRSYIEGLGEYLTRSSDTNARSSDLNGARFTSGKTNDDVKLLLQCTSPLLWSHNSAVVLAAAGVHWIMS--- 236 (1007)
Q Consensus 160 ~~~~~~~~~~~~~~~~de~~~~~~~~~~~~~~~~~~~~~~~~~D~D~~lLL~~~~pLLqS~NsAVVlaaa~l~~~la--- 236 (1007)
+..+++.+.-.+.+.||.+-..|..++--+-
T Consensus 369 ----------------------------------------------l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~ 402 (815)
T KOG1820|consen 369 ----------------------------------------------LSKMSEAILEALKGKNPQIKGECLLLLDRKLRKL 402 (815)
T ss_pred ----------------------------------------------HHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhc
Q ss_pred -----CHHHHHHHHHHHHHhhcC-CCCchhhHHHHHHHHHHHCC-Cccccccceee
Q 001839 237 -----PKEDVKRIVKPLLFILRS-SGASKYVVLCNIQVFAKALP-HLFVPHYEDFF 285 (1007)
Q Consensus 237 -----p~~~l~~~~~pLv~LL~S-~~eiqyvvL~~I~~i~~~~p-~lF~~~l~~Ff 285 (1007)
+...+..++..++...+. ..+||-+++..+..+.+... ..|..++...+
T Consensus 403 ~~~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~~Ge~~~~k~L~~~~ 458 (815)
T KOG1820|consen 403 GPKTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMKVHGEEVFKKLLKDLD 458 (815)
T ss_pred CCcCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhc
No 207
>PF08161 NUC173: NUC173 domain; InterPro: IPR012978 This is the central domain of a novel family of hypothetical nucleolar proteins [].
Probab=23.65 E-value=9.3e+02 Score=25.87 Aligned_cols=31 Identities=13% Similarity=0.066 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHhhcCCCCchhhHHHHHHHH
Q 001839 239 EDVKRIVKPLLFILRSSGASKYVVLCNIQVF 269 (1007)
Q Consensus 239 ~~l~~~~~pLv~LL~S~~eiqyvvL~~I~~i 269 (1007)
+.++.+++-|..+|++.++.|-.+.+.+..|
T Consensus 167 ~~F~~~a~~L~~~L~~~~~LR~~Ic~aL~~L 197 (198)
T PF08161_consen 167 ESFPSFAKLLGNALYDQPDLRPIICQALRRL 197 (198)
T ss_pred HHHHHHHHHHHHHHhcCcchHHHHHHHHHHH
Confidence 4577788889999999999999999888776
No 208
>COG5406 Nucleosome binding factor SPN, SPT16 subunit [Transcription / DNA replication, recombination, and repair / Chromatin structure and dynamics]
Probab=22.91 E-value=59 Score=40.21 Aligned_cols=11 Identities=18% Similarity=0.317 Sum_probs=5.2
Q ss_pred HHHCCCccccc
Q 001839 270 AKALPHLFVPH 280 (1007)
Q Consensus 270 ~~~~p~lF~~~ 280 (1007)
....|-+|..+
T Consensus 408 ~ls~p~~~t~~ 418 (1001)
T COG5406 408 SLSNPIVFTDS 418 (1001)
T ss_pred ecCCceecccC
Confidence 33445555443
No 209
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6).; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus
Probab=22.87 E-value=2.7e+02 Score=26.17 Aligned_cols=60 Identities=18% Similarity=0.188 Sum_probs=43.7
Q ss_pred CCCChhHHHHHHHHHHHHhhcCch---hhHhhHHHHHHHHhcC--CChhHHHHHHHHHHHhCCCC
Q 001839 22 RDPSVFVRKCAANALPKLHELRQE---EITSAIEEIVGILLND--RSPGVVGAAAAAFASICPNN 81 (1007)
Q Consensus 22 ~D~SPYVRKtAA~AI~Kly~ldpe---~~~~~LieiL~~LL~D--~~p~VvgsAv~Af~EIcP~r 81 (1007)
.|.+..+|.-||.-+..+.+--.+ .-++.+...+.+.|.| ++..+.-.|++.+.++-|+-
T Consensus 16 ~~~h~~LRd~AA~lL~~I~~~~~~~~~~L~~Ri~~tl~k~l~d~~~~~~t~YGAi~gL~~lG~~~ 80 (92)
T PF07571_consen 16 VDNHWALRDFAASLLAQICRKFSSSYPTLQPRITRTLLKALLDPKKPLGTHYGAIVGLSALGPEA 80 (92)
T ss_pred CcchHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 466889999999999999876221 3555666666666654 55668889999999986553
No 210
>PF07705 CARDB: CARDB; InterPro: IPR011635 The APHP (acidic peptide-dependent hydrolases/peptidase) domain is found in a variety of different proteins.; PDB: 2KUT_A 2L0D_A 3IDU_A 2KL6_A.
Probab=22.57 E-value=2.8e+02 Score=25.04 Aligned_cols=55 Identities=22% Similarity=0.177 Sum_probs=35.1
Q ss_pred CCeEEEEEEEEeCCCCceeeeEeeccccchhhhhhhhhhhccccccccCCCCCCcccCCcccccCCCCeeEEEEEEEcC
Q 001839 753 PQLVCLETFFENCSSETMSEVTLVDEESHKALDLADLTLATTASSLTSQSDLPTLVPMEEITSLEPGQTMKRILEVRFH 831 (1007)
Q Consensus 753 ~~mv~v~l~f~N~s~~~i~~i~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~f~~i~~l~p~~~~~~~~~idF~ 831 (1007)
..=+.|.++++|.+.....++.+.=- .+|-. ..-..|..|+||++.+..+-+.+.
T Consensus 18 g~~~~i~~~V~N~G~~~~~~~~v~~~-----~~~~~-------------------~~~~~i~~L~~g~~~~v~~~~~~~ 72 (101)
T PF07705_consen 18 GEPVTITVTVKNNGTADAENVTVRLY-----LDGNS-------------------VSTVTIPSLAPGESETVTFTWTPP 72 (101)
T ss_dssp TSEEEEEEEEEE-SSS-BEEEEEEEE-----ETTEE-------------------EEEEEESEB-TTEEEEEEEEEE-S
T ss_pred CCEEEEEEEEEECCCCCCCCEEEEEE-----ECCce-------------------eccEEECCcCCCcEEEEEEEEEeC
Confidence 45567888999999998888777521 12210 012367899999999888877776
No 211
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=22.38 E-value=59 Score=40.25 Aligned_cols=86 Identities=20% Similarity=0.247 Sum_probs=0.0
Q ss_pred CCcccchhhhHHHHHHHHhhcCCCChhHHHHHHHHHHHHhhcCchhhHhhHHHHHHHHhcCCC--hhHHHHHHHHHHHhC
Q 001839 1 MAGIRLHVISPLVLVAVGKCARDPSVFVRKCAANALPKLHELRQEEITSAIEEIVGILLNDRS--PGVVGAAAAAFASIC 78 (1007)
Q Consensus 1 MssIRVp~I~piv~~aIkk~~~D~SPYVRKtAA~AI~Kly~ldpe~~~~~LieiL~~LL~D~~--p~VvgsAv~Af~EIc 78 (1007)
++.+..+.+++.++..|.... +.++.||..|+.|+.++-...| ..+.+++..++.|.. +-|=.+|+.++.+.-
T Consensus 514 LgN~g~~~~i~~l~~~i~~~~-~~~~~~R~~Ai~Alr~~~~~~~----~~v~~~l~~I~~n~~e~~EvRiaA~~~lm~~~ 588 (618)
T PF01347_consen 514 LGNLGHPESIPVLLPYIEGKE-EVPHFIRVAAIQALRRLAKHCP----EKVREILLPIFMNTTEDPEVRIAAYLILMRCN 588 (618)
T ss_dssp HHHHT-GGGHHHHHTTSTTSS--S-HHHHHHHHHTTTTGGGT-H----HHHHHHHHHHHH-TTS-HHHHHHHHHHHHHT-
T ss_pred hhccCCchhhHHHHhHhhhcc-ccchHHHHHHHHHHHHHhhcCc----HHHHHHHHHHhcCCCCChhHHHHHHHHHHhcC
Q ss_pred CCCccchHHHHHHH
Q 001839 79 PNNFTLIGRNYRNL 92 (1007)
Q Consensus 79 P~rldLihk~yrkL 92 (1007)
|.. .++...+..|
T Consensus 589 P~~-~~l~~i~~~l 601 (618)
T PF01347_consen 589 PSP-SVLQRIAQSL 601 (618)
T ss_dssp --H-HHHHHHHHHH
T ss_pred CCH-HHHHHHHHHH
No 212
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=22.29 E-value=1.3e+02 Score=31.70 Aligned_cols=36 Identities=17% Similarity=0.138 Sum_probs=30.8
Q ss_pred hhHHHHHHHHhhcCCCChhHHHHHHHHHHHHhhcCc
Q 001839 9 ISPLVLVAVGKCARDPSVFVRKCAANALPKLHELRQ 44 (1007)
Q Consensus 9 I~piv~~aIkk~~~D~SPYVRKtAA~AI~Kly~ldp 44 (1007)
-.+.++..+...+.|...||||+.+-++.-++.-+|
T Consensus 152 ~~~~~l~~~~~~~~d~~~~vq~ai~w~L~~~~~~~~ 187 (213)
T PF08713_consen 152 DFDELLEIIEALLKDEEYYVQKAIGWALREIGKKDP 187 (213)
T ss_dssp HHHHHHHHHHHCTTGS-HHHHHHHHHHHHHHCTT-H
T ss_pred CHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhCH
Confidence 346778888999999999999999999999999999
No 213
>PF03130 HEAT_PBS: PBS lyase HEAT-like repeat; InterPro: IPR004155 These proteins contain a short bi-helical repeat that is related to HEAT. Cyanobacteria and red algae harvest light energy using macromolecular complexes known as phycobilisomes (PBS), peripherally attached to the photosynthetic membrane. The major components of PBS are the phycobiliproteins. These heterodimeric proteins are covalently attached to phycobilins: open-chain tetrapyrrole chromophores, which function as the photosynthetic light-harvesting pigments. Phycobiliproteins differ in sequence and in the nature and number of attached phycobilins to each of their subunits. These proteins include the lyase enzymes that specifically attach particular phycobilins to apophycobiliprotein subunits. The most comprehensively studied of these is the CpcE/Flyase P31967 from SWISSPROT, P31968 from SWISSPROT, which attaches phycocyanobilin (PCB) to the alpha subunit of apophycocyanin []. Similarly, MpeU/V attaches phycoerythrobilin to phycoerythrin II, while CpeY/Z is thought to be involved in phycoerythrobilin (PEB) attachment to phycoerythrin (PE) I (PEs I and II differ in sequence and in the number of attached molecules of PEB: PE I has five, PE II has six) []. All the reactions of the above lyases involve an apoprotein cysteine SH addition to a terminal delta 3,3'-double bond. Such a reaction is not possible in the case of phycoviolobilin (PVB), the phycobilin of alpha-phycoerythrocyanin (alpha-PEC). It is thought that in this case, PCB, not PVB, is first added to apo-alpha-PEC, and is then isomerized to PVB. The addition reaction has been shown to occur in the presence of either of the components of alpha-PEC-PVB lyase PecE or PecF (or both). The isomerisation reaction occurs only when both PecE and PecF components are present, i.e. the PecE/F phycobiliprotein lyase is also a phycobilin isomerase []. Another member of this family is the NblB protein, whose similarity to the phycobiliprotein lyases was previously noted []. This constitutively expressed protein is not known to have any lyase activity. It is thought to be involved in the coordination of PBS degradation with environmental nutrient limitation. It has been suggested that the similarity of NblB to the phycobiliprotein lyases is due to the ability to bind tetrapyrrole phycobilins via the common repeated motif [].; PDB: 1TE4_A.
Probab=22.28 E-value=67 Score=23.20 Aligned_cols=13 Identities=46% Similarity=0.618 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHh
Q 001839 28 VRKCAANALPKLH 40 (1007)
Q Consensus 28 VRKtAA~AI~Kly 40 (1007)
||..||.++.++-
T Consensus 1 VR~~Aa~aLg~ig 13 (27)
T PF03130_consen 1 VRRAAARALGQIG 13 (27)
T ss_dssp HHHHHHHHHGGG-
T ss_pred CHHHHHHHHHHcC
Confidence 8999999998763
No 214
>PF00927 Transglut_C: Transglutaminase family, C-terminal ig like domain; InterPro: IPR008958 Synonym(s): Protein-glutamine gamma-glutamyltransferase, Fibrinoligase, TGase Transglutaminases catalyse the post-translational modification of proteins at glutamine residues, with formation of isopeptide bonds. Members of the transglutaminase family usually have three domains: N-terminal (IPR001102 from INTERPRO), middle (IPR013808 from INTERPRO) and C-terminal. The middle domain is usually well conserved, but family members can display major differences in their N- and C-terminal domains, although their overall structure is conserved []. This entry represents the C-terminal domain found in transglutaminases, which consists of an immunoglobulin-like beta-sandwich consisting of seven strands in two sheets with a Greek key topology. The best known transglutaminase is blood coagulation factor XIII, a plasma tetrameric protein composed of two catalytic A subunits and two non-catalytic B subunits. Factor XIII is responsible for cross-linking fibrin chains, thus stabilising the fibrin clot. Protein-glutamine gamma-glutamyltransferases (2.3.2.13 from EC) are calcium-dependent enzymes that catalyse the cross-linking of proteins by promoting the formation of isopeptide bonds between the gamma-carboxyl group of a glutamine in one polypeptide chain and the epsilon-amino group of a lysine in a second polypeptide chain. TGases also catalyse the conjugation of polyamines to proteins [, ].; GO: 0003810 protein-glutamine gamma-glutamyltransferase activity, 0018149 peptide cross-linking; PDB: 2XZZ_A 1GGY_B 1FIE_B 1GGU_B 1GGT_B 1F13_A 1QRK_B 1EVU_A 1EX0_B 1L9N_B ....
Probab=21.96 E-value=83 Score=29.80 Aligned_cols=62 Identities=19% Similarity=0.172 Sum_probs=36.7
Q ss_pred eEEEEEEEEeCCCCceeeeEeeccccchhhhhhhhhhhccccccccCCCCCC--cccCCcccccCCCCeeEEEEEEEcCC
Q 001839 755 LVCLETFFENCSSETMSEVTLVDEESHKALDLADLTLATTASSLTSQSDLPT--LVPMEEITSLEPGQTMKRILEVRFHH 832 (1007)
Q Consensus 755 mv~v~l~f~N~s~~~i~~i~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~--~~~f~~i~~l~p~~~~~~~~~idF~~ 832 (1007)
=+.|.+.|+|.+++++++|.+.=-... -.| .+++. +..-.....|+||++.+..+-|.+.+
T Consensus 16 d~~v~v~~~N~~~~~l~~v~~~l~~~~--v~y---------------tG~~~~~~~~~~~~~~l~p~~~~~~~~~i~p~~ 78 (107)
T PF00927_consen 16 DFTVSVSFTNPSSEPLRNVSLNLCAFT--VEY---------------TGLTRDQFKKEKFEVTLKPGETKSVEVTITPSQ 78 (107)
T ss_dssp EEEEEEEEEE-SSS-EECEEEEEEEEE--EEC---------------TTTEEEEEEEEEEEEEE-TTEEEEEEEEE-HHS
T ss_pred CEEEEEEEEeCCcCccccceeEEEEEE--EEE---------------CCcccccEeEEEcceeeCCCCEEEEEEEEEcee
Confidence 356899999999999999876532110 011 12211 11222445899999999999998877
Q ss_pred C
Q 001839 833 H 833 (1007)
Q Consensus 833 ~ 833 (1007)
-
T Consensus 79 y 79 (107)
T PF00927_consen 79 Y 79 (107)
T ss_dssp H
T ss_pred E
Confidence 5
No 215
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=21.88 E-value=1.3e+02 Score=40.12 Aligned_cols=14 Identities=29% Similarity=0.532 Sum_probs=8.5
Q ss_pred hHHhHHHHHHHHcc
Q 001839 492 DVRDRARFFKKLFS 505 (1007)
Q Consensus 492 DVRDRArfy~~LL~ 505 (1007)
-+-||.||.++..+
T Consensus 1524 ~~adr~Rf~qat~q 1537 (3015)
T KOG0943|consen 1524 AIADRMRFLQATAQ 1537 (3015)
T ss_pred hHHHHHHHHHHHHH
Confidence 35677777665443
No 216
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=21.77 E-value=1.4e+02 Score=23.94 Aligned_cols=39 Identities=28% Similarity=0.234 Sum_probs=29.9
Q ss_pred HHHHHhhcCchh-hHhhHHHHHHHHhcCCChhHHHHHHHH
Q 001839 35 ALPKLHELRQEE-ITSAIEEIVGILLNDRSPGVVGAAAAA 73 (1007)
Q Consensus 35 AI~Kly~ldpe~-~~~~LieiL~~LL~D~~p~VvgsAv~A 73 (1007)
||..+-..||.- ..+.+...+..-|.|.+|.|--+|+-+
T Consensus 2 ~l~~iv~~dp~ll~~~~v~~~i~~rl~D~s~~VR~aav~l 41 (42)
T PF12765_consen 2 ALSSIVEKDPTLLDSSDVQSAIIRRLSDSSPSVREAAVDL 41 (42)
T ss_pred hHHHHHhcCccccchHHHHHHHHHHhcCCChHHHHHHHHH
Confidence 456666778842 556788888899999999998888754
No 217
>KOG1932 consensus TATA binding protein associated factor [Transcription]
Probab=21.72 E-value=8.4e+02 Score=32.85 Aligned_cols=210 Identities=17% Similarity=0.140 Sum_probs=105.2
Q ss_pred HHHHHhhcCC---CCchhhHHHHHHHHHHHCCCcc-cccc----ceeeeccCCCHHHHHHHHHHHHhccCCCCHHHHHHH
Q 001839 246 KPLLFILRSS---GASKYVVLCNIQVFAKALPHLF-VPHY----EDFFVSSSDSYQSKALKLEILSSIVTESSISSVFKE 317 (1007)
Q Consensus 246 ~pLv~LL~S~---~eiqyvvL~~I~~i~~~~p~lF-~~~l----~~Ffv~~~Dp~~IK~lKLeIL~~Lane~Ni~~IL~E 317 (1007)
.+|.+.|.+. --||+-+...+...+...+..- -+|+ +.+||..+-+ +.-.+|+..
T Consensus 677 ~~L~rtl~der~FyrIR~~Aa~aLak~a~~~~dwtG~~~Li~~F~~~fc~k~st-------------IpKsNnF~~---- 739 (1180)
T KOG1932|consen 677 SALTRTLEDERYFYRIRIAAAFALAKTANGESDWTGPPHLIQFFRKKFCSKDST-------------IPKSNNFSN---- 739 (1180)
T ss_pred HHHHHHHhhcchhhHHHHHHHHHHHHhhcccccccChHHHHHHHHHHhccccCC-------------CCCcCcccc----
Confidence 5666655432 4577777777777654422211 1233 3333433222 244566655
Q ss_pred HHHhhccCChhHHHHHH-HHHHHHHHhCcccHHHHHHHHHHHHHhhhccccccCCCCCccchhhHHHHHHHHHHc--CCc
Q 001839 318 FQDYIRDPDRRFAADTV-AAIGLCARKLPKMANTCVEGLLALIRQELLTSDIESGNGEADVLIQSIISIKSIIKQ--DPS 394 (1007)
Q Consensus 318 L~~Yv~d~D~~fv~~aI-~AIG~~A~k~p~~a~~cl~~Ll~LLs~~~~~s~~~~~~~~~~vV~EsVvvIk~Llq~--~P~ 394 (1007)
|+.| |++++| .|++.+--+-..+..-+...|++||..+- .+++.|. |.++++.-|..|-..+-. -+.
T Consensus 740 ~q~Y-------fvq~~iP~a~a~lR~~~g~cp~~V~~FlLdLlkyND-Ns~N~YS--D~~y~a~LIesl~~~l~p~~s~~ 809 (1180)
T KOG1932|consen 740 FQEY-------FVQCAIPVAFASLRGREGKCPKEVKAFLLDLLKYND-NSFNSYS--DDYYRASLIESLVESLFPMVSLE 809 (1180)
T ss_pred HHHH-------HHHHhhHHHHHHhccccCCChHHHHHHHHHHhhccc-CCCCccc--hHHHHHHHHHHHhhhcccccchh
Confidence 6666 555554 56666666667788889999999998641 1222232 334444433333222110 011
Q ss_pred hHHH------HH----HhhhccCchhhHHh---------------hhhhccccccCCCCccccHHHHHHHHHHhhccCcH
Q 001839 395 CHEK------LF----RSLDSIKVPEARVM---------------IIWMVGEYSSVGVKIPRMLTTVLKYLAWCFKSEAV 449 (1007)
Q Consensus 395 ~~~~------L~----~~ld~I~~p~ArAs---------------IIWLLGEY~~~~e~ip~ia~DvLR~l~k~F~~E~~ 449 (1007)
.|.. |. ..++.++.-..... .+-.+|..++ +|. .|. ..++|+.|..
T Consensus 810 ~~~~k~~~~~l~~~~~~~~~ei~r~L~~e~l~pS~k~ii~~~~l~~~~~l~k~~h----l~s-~p~----~~~~~a~~~~ 880 (1180)
T KOG1932|consen 810 FYAEKHTDRLLSRDVRVLIDEITRLLNMEKLMPSFKHIIKVSALKAIRELQKSGH----LPS-LPE----LLESYAEEGS 880 (1180)
T ss_pred hhhhhhcchhhhhHHHHHHHHHHHHHHHHhhchhhhceEEeeechhhhhhhhccc----ccc-Cch----hhhccccccc
Confidence 1110 00 01122221111111 1233444433 232 222 3457777763
Q ss_pred --HHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHccCCChhHHhHH
Q 001839 450 --ETKLQILNTTIKVLLCAKGGDMWTITRLFSYLLELAECDLNYDVRDRA 497 (1007)
Q Consensus 450 --~VKlqILtlaaKL~~~~p~e~~~~i~~L~qyvLeLak~D~n~DVRDRA 497 (1007)
.+++.++++.+-+--.. .....+.|++++..+|.++=+|++-
T Consensus 881 ~vd~r~~a~~~~v~~~~~~------~~~~~l~~~leil~~~~dp~~R~~i 924 (1180)
T KOG1932|consen 881 FVDVRICAEELNVDLGGVD------GSPDDLAYILEILENDPDPVIRHKI 924 (1180)
T ss_pred hhhhHHHhhhhhhhhcccC------CChHHHHHHhhhcccCcchHHHHHH
Confidence 56666666665443211 1235678899999999999888764
No 218
>PF04147 Nop14: Nop14-like family ; InterPro: IPR007276 Emg1 and Nop14 are novel proteins whose interaction is required for the maturation of the 18S rRNA and for 40S ribosome production [].
Probab=21.64 E-value=73 Score=41.45 Aligned_cols=26 Identities=12% Similarity=0.552 Sum_probs=15.3
Q ss_pred CCCCeEEEEEEEEeCCCCceeeeEee
Q 001839 751 ISPQLVCLETFFENCSSETMSEVTLV 776 (1007)
Q Consensus 751 ~s~~mv~v~l~f~N~s~~~i~~i~i~ 776 (1007)
++|.|+.+-=+++.|-=..+.+|..|
T Consensus 563 VTPalllm~~~L~q~~v~s~~di~~G 588 (840)
T PF04147_consen 563 VTPALLLMSEYLSQCRVRSLRDIASG 588 (840)
T ss_pred hhHHHHHHHHHHhcCCCCCHHHHHHH
Confidence 36666666666666655555555544
No 219
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=21.30 E-value=5e+02 Score=26.80 Aligned_cols=36 Identities=19% Similarity=0.128 Sum_probs=30.8
Q ss_pred chhhhHHHHHHHHhhcCCCChhHHHHHHHHHHHHhhcCc
Q 001839 6 LHVISPLVLVAVGKCARDPSVFVRKCAANALPKLHELRQ 44 (1007)
Q Consensus 6 Vp~I~piv~~aIkk~~~D~SPYVRKtAA~AI~Kly~ldp 44 (1007)
-|.+.++++..+|.. .++-+|+.|.-++.-|=-+||
T Consensus 8 yP~LL~~L~~iLk~e---~s~~iR~E~lr~lGilGALDP 43 (160)
T PF11865_consen 8 YPELLDILLNILKTE---QSQSIRREALRVLGILGALDP 43 (160)
T ss_pred hHHHHHHHHHHHHhC---CCHHHHHHHHHHhhhccccCc
Confidence 477888888888876 569999999999999999999
No 220
>PF05327 RRN3: RNA polymerase I specific transcription initiation factor RRN3; InterPro: IPR007991 This family consists of several eukaryotic proteins which are homologous to the Saccharomyces cerevisiae RRN3 protein. RRN3 is one of the RRN genes specifically required for the transcription of rDNA by RNA polymerase I (Pol I) in the S. cerevisiae [] RNA polymerase I complex within the nucleolus. In mammalian cells, the phosphorylation state of Rrn3 regulates rDNA transcription by determining the steady-state concentration of the Rrn3 [].; PDB: 3TJ1_B.
Probab=21.17 E-value=4e+02 Score=33.13 Aligned_cols=93 Identities=14% Similarity=0.149 Sum_probs=49.3
Q ss_pred CChhHHHHHHhhccccc-CCChHHHHHHHHHHHhcC--CHHHHHHHHHHHHHhhcCCCC------------------chh
Q 001839 202 TNDDVKLLLQCTSPLLW-SHNSAVVLAAAGVHWIMS--PKEDVKRIVKPLLFILRSSGA------------------SKY 260 (1007)
Q Consensus 202 ~D~D~~lLL~~~~pLLq-S~NsAVVlaaa~l~~~la--p~~~l~~~~~pLv~LL~S~~e------------------iqy 260 (1007)
+|.++..|++++..+.| .+++++|-+-.+....|. -...+..+...||..+...+. .-.
T Consensus 67 Ld~~~~~LV~ail~~~W~~~~~~~v~~y~~Fl~~Lvsa~~~yl~~vl~~LV~~f~p~~~~~~~~~~~~~~~~~~~~~~vH 146 (563)
T PF05327_consen 67 LDSSCKQLVEAILSLNWLGRDEDFVEAYIQFLINLVSAQPKYLSPVLSMLVKNFIPPPSSIAEWPGCPPEKRREIYERVH 146 (563)
T ss_dssp G-SCCHHHHHHHHT-TGGGS-HHHHHHHHHHHHHHHHH-GGGHHHHHHHHHHGGGS-HHHHHH---------------HH
T ss_pred hhhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccCCCccccccchhhhhhhhhhHHHHH
Confidence 44456778888888888 888888888777665553 345566777777765532111 122
Q ss_pred hHHHHHHHHHHHCCCccccccceeeeccCCCHHH
Q 001839 261 VVLCNIQVFAKALPHLFVPHYEDFFVSSSDSYQS 294 (1007)
Q Consensus 261 vvL~~I~~i~~~~p~lF~~~l~~Ffv~~~Dp~~I 294 (1007)
-+|+.|..++-..+..+.+-+..-|...++|...
T Consensus 147 ~~L~~Il~lvP~s~~~L~~~l~~~FP~~~~~~~~ 180 (563)
T PF05327_consen 147 DALQKILRLVPTSPSFLIPILVQNFPHKRKSKDE 180 (563)
T ss_dssp HHHHHHHHH-GGGHHHHHHHHHHTS--TTS-HHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCcCCCCChHH
Confidence 3344444433333345556666666655666533
No 221
>cd05700 S1_Rrp5_repeat_hs9 S1_Rrp5_repeat_hs9: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes Homo sapiens S1 repeat 9 (hs9). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=20.78 E-value=82 Score=27.73 Aligned_cols=17 Identities=41% Similarity=0.714 Sum_probs=15.0
Q ss_pred ccCCCCeeEE-EEEEEcC
Q 001839 815 SLEPGQTMKR-ILEVRFH 831 (1007)
Q Consensus 815 ~l~p~~~~~~-~~~idF~ 831 (1007)
.|.|||.+++ +|+|||-
T Consensus 40 nl~pGqK~kaviLhvD~l 57 (65)
T cd05700 40 NVTPGCKLKAVILHVDFV 57 (65)
T ss_pred ecCCCceeEEEEEEEeeE
Confidence 5889999988 8999984
No 222
>KOG2959 consensus Transcriptional regulator [Transcription]
Probab=20.70 E-value=1.3e+02 Score=32.32 Aligned_cols=10 Identities=40% Similarity=0.846 Sum_probs=4.4
Q ss_pred CCCccCCCCC
Q 001839 565 PGYEPLPKPC 574 (1007)
Q Consensus 565 ~gY~~LP~~~ 574 (1007)
+-|+|-|.|-
T Consensus 15 ~~~~~~~t~~ 24 (238)
T KOG2959|consen 15 PPKRPTPTPT 24 (238)
T ss_pred cCCCCCCCCc
Confidence 3444444433
No 223
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=20.55 E-value=4e+02 Score=29.98 Aligned_cols=79 Identities=15% Similarity=0.286 Sum_probs=52.5
Q ss_pred HHHHhccCCCCHHHHHHHHHHhhcc---CChhHHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhccccccCCCCCcc
Q 001839 300 EILSSIVTESSISSVFKEFQDYIRD---PDRRFAADTVAAIGLCARKLPKMANTCVEGLLALIRQELLTSDIESGNGEAD 376 (1007)
Q Consensus 300 eIL~~Lane~Ni~~IL~EL~~Yv~d---~D~~fv~~aI~AIG~~A~k~p~~a~~cl~~Ll~LLs~~~~~s~~~~~~~~~~ 376 (1007)
+.|..+|...+...+-+=|..|++. ...+|.+.+++.|. -.-+|+....++..|+.+|. |+-..
T Consensus 137 ~~La~~a~~~~~~~La~il~~ya~~~fr~~~dfl~~v~~~l~--~~f~P~~~~~~l~~Ll~lL~-----------n~~~w 203 (262)
T PF14225_consen 137 EALAQVAEAQGLPNLARILSSYAKGRFRDKDDFLSQVVSYLR--EAFFPDHEFQILTFLLGLLE-----------NGPPW 203 (262)
T ss_pred HHHHHHHHhCCCccHHHHHHHHHhcCCCCHHHHHHHHHHHHH--HHhCchhHHHHHHHHHHHHh-----------CCcHH
Confidence 5666666654444444444455543 34479999999884 33459999999999999998 33344
Q ss_pred chhhHHHHHHHHHHc
Q 001839 377 VLIQSIISIKSIIKQ 391 (1007)
Q Consensus 377 vV~EsVvvIk~Llq~ 391 (1007)
+-.+...+|+.+++.
T Consensus 204 ~~~~~L~iL~~ll~~ 218 (262)
T PF14225_consen 204 LRRKTLQILKVLLPH 218 (262)
T ss_pred HHHHHHHHHHHHhcc
Confidence 555566677777765
No 224
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=20.55 E-value=1.2e+03 Score=25.94 Aligned_cols=150 Identities=17% Similarity=0.107 Sum_probs=85.1
Q ss_pred HHHHHhhcccccCCChHHHHHHHHHHHhcCC--------H-HH---HHHHHHHH---HHhhcCC---CCchhhHHHHHHH
Q 001839 207 KLLLQCTSPLLWSHNSAVVLAAAGVHWIMSP--------K-ED---VKRIVKPL---LFILRSS---GASKYVVLCNIQV 268 (1007)
Q Consensus 207 ~lLL~~~~pLLqS~NsAVVlaaa~l~~~lap--------~-~~---l~~~~~pL---v~LL~S~---~eiqyvvL~~I~~ 268 (1007)
..++..+++++....|-.+...++++|.++- . .. ++++...+ ......+ .+.|+-+|+.+..
T Consensus 13 ~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~ 92 (278)
T PF08631_consen 13 EHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLAN 92 (278)
T ss_pred HHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHH
Confidence 5677888888888888888888888887642 1 11 23332222 2222222 3567777776655
Q ss_pred HHHH--CCCcccc---ccceeeeccCCCHHHHHHHHHHHHhccCCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHHHHh
Q 001839 269 FAKA--LPHLFVP---HYEDFFVSSSDSYQSKALKLEILSSIVTESSISSVFKEFQDYIRDPDRRFAADTVAAIGLCARK 343 (1007)
Q Consensus 269 i~~~--~p~lF~~---~l~~Ffv~~~Dp~~IK~lKLeIL~~Lane~Ni~~IL~EL~~Yv~d~D~~fv~~aI~AIG~~A~k 343 (1007)
.-.. .++-+.. .++..---+.++..+-.+||++|....+..-+..+|..+..-+..++. -...++..|..++.+
T Consensus 93 ~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~-~~~~~l~~i~~l~~~ 171 (278)
T PF08631_consen 93 AYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSES-NFDSILHHIKQLAEK 171 (278)
T ss_pred HHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccc-hHHHHHHHHHHHHhh
Confidence 4322 1222211 111111123456679999999999955555555555555444332222 333456677777778
Q ss_pred CcccHHHHHHHHHH
Q 001839 344 LPKMANTCVEGLLA 357 (1007)
Q Consensus 344 ~p~~a~~cl~~Ll~ 357 (1007)
-+..+-.|+..++.
T Consensus 172 ~~~~a~~~ld~~l~ 185 (278)
T PF08631_consen 172 SPELAAFCLDYLLL 185 (278)
T ss_pred CcHHHHHHHHHHHH
Confidence 88777777765554
No 225
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=20.37 E-value=4e+02 Score=33.65 Aligned_cols=101 Identities=15% Similarity=0.191 Sum_probs=71.4
Q ss_pred HHHHhhcCCCChhHHHHHHHHHHHHhh-c-Cchh--hHhhHHHHHHHHhcCCChhHHHHHHHHHHHhC---CCC--ccch
Q 001839 15 VAVGKCARDPSVFVRKCAANALPKLHE-L-RQEE--ITSAIEEIVGILLNDRSPGVVGAAAAAFASIC---PNN--FTLI 85 (1007)
Q Consensus 15 ~aIkk~~~D~SPYVRKtAA~AI~Kly~-l-dpe~--~~~~LieiL~~LL~D~~p~VvgsAv~Af~EIc---P~r--ldLi 85 (1007)
..+-+.+.|++-.|-+++.-||..+-- . ++.+ -....++.+..++.|.++.+..+++-++..+- -+. ..+.
T Consensus 422 ~plvqll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~ 501 (678)
T KOG1293|consen 422 QPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLMFNCDEEEKFQLL 501 (678)
T ss_pred HHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHHhcchHHHHHHHH
Confidence 344455699999999999999998753 2 2211 33457788899999999999999999999873 221 3455
Q ss_pred HHHHHHHHHhCCCCChhh-HHHHHHHHHHhh
Q 001839 86 GRNYRNLCQILPDVEEWG-QILLIEILLRYV 115 (1007)
Q Consensus 86 hk~yrkLc~~L~d~dEWg-Qv~iL~lL~rY~ 115 (1007)
.+..-+++-.+..=.+|+ |--.+++|+...
T Consensus 502 ~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~ 532 (678)
T KOG1293|consen 502 AKIPANLILDLINDPDWAVQEQCFQLLRNLT 532 (678)
T ss_pred HHhhHHHHHHHHhCCCHHHHHHHHHHHHHhh
Confidence 565544444444456677 888888887664
Done!