Query 001839
Match_columns 1007
No_of_seqs 246 out of 769
Neff 5.7
Searched_HMMs 29240
Date Tue Mar 26 16:34:56 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/001839.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1135-1139//hhsearch_pdb/001839hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2vgl_A Adaptor protein complex 1.0 1 1 524.9 21.0 431 1-542 135-607 (621)
2 2vgl_B AP-2 complex subunit be 1.0 1 1 522.0 40.3 442 1-563 110-577 (591)
3 1w63_A Adapter-related protein 1.0 1 1 465.8 31.8 438 1-565 131-609 (618)
4 3tjz_B Coatomer subunit gamma; 1.0 1 1 222.2 8.7 221 1-309 128-355 (355)
5 2g30_A AP-2 complex subunit be 1.0 1 1 171.6 21.3 222 721-1001 28-257 (258)
6 1b3u_A Protein (protein phosph 1.0 1 1 101.5 22.4 285 14-346 12-314 (588)
7 4fdd_A Transportin-1; heat rep 1.0 1 1 100.8 27.7 373 21-485 57-492 (852)
8 1w63_A Adapter-related protein 1.0 1 1 96.5 18.1 97 16-115 74-170 (618)
9 2vgl_B AP-2 complex subunit be 1.0 1 1 96.3 21.6 382 15-507 52-456 (591)
10 1u6g_C TIP120 protein, CAND1; 1.0 1 1 90.7 32.0 447 10-505 46-597 (1230)
No 1
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=1.00 E-value=1 Score=524.94 Aligned_cols=431 Identities=17% Similarity=0.212 Sum_probs=360.4
Q ss_pred CCCCCCHHHHHHHHHHHHHHC--CCCCHHHHHHHHHHHHHHHHCCCHHHHH--HHHHHHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf 986452133687999998622--8999027799999999986007013176--699999988139990079999999998
Q 001839 1 MAGIRLHVISPLVLVAVGKCA--RDPSVFVRKCAANALPKLHELRQEEITS--AIEEIVGILLNDRSPGVVGAAAAAFAS 76 (1007)
Q Consensus 1 MssIRVp~I~piv~~aIkk~~--~D~SPYVRKtAA~AI~Kly~ldp~~~~~--~L~eil~~LL~D~sp~VvgsAv~Af~E 76 (1007)
||+||.|++++.++.+|++++ .|.+|||||+||+|+.|+|+++| +..+ .+.+.+..||+|++|+|+++|+.++.+
T Consensus 135 L~~i~~~e~~~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p-~~~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~ 213 (621)
T 2vgl_A 135 IANVGSREMAEAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSP-DLVPMGDWTSRVVHLLNDQHLGVVTAATSLITT 213 (621)
T ss_dssp HHHHCCHHHHHHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCG-GGCCCCSCHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred HHCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCH-HHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHH
T ss_conf 6655979999999999999981799977999999999999997491-005712399999998479980299999999999
Q ss_pred HCCCCC----CCHHHHHHHHHHHCC--CC-----------CHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCC
Q ss_conf 598972----212899999998589--99-----------9335999999999722100366420111111000257874
Q 001839 77 ICPNNF----TLIGRNYRNLCQILP--DV-----------EEWGQILLIEILLRYVVASHGLVKESIMSSLLCIESSHSE 139 (1007)
Q Consensus 77 IcP~r~----dLihk~yrkLc~lL~--d~-----------dEWgQv~iL~lL~rY~r~~~~~~~p~~mf~~~~~~~~~~e 139 (1007)
||+++. .++++.++.|++++. ++ +||+|+.+|++|.+|++... |.
T Consensus 214 i~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d----~~-------------- 275 (621)
T 2vgl_A 214 LAQKNPEEFKTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPED----PA-------------- 275 (621)
T ss_dssp HHHHCHHHHTTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSS----HH--------------
T ss_pred HHHHCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCHHHHHHHHHHHHHCCCCC----HH--------------
T ss_conf 999696989988899999999998678998620011589996399999999987288888----89--------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH--CC--
Q ss_conf 21000000011389999766401232100000025432113577755556666576446898874699999951--00--
Q 001839 140 KDVFDVNVALEDNGIPSRTYDSELVNLVSRSYIEGLGEYLTRSSDTNARSSDLNGARFTSGKTNDDVKLLLQCT--SP-- 215 (1007)
Q Consensus 140 ~~~~~~~~~le~~~~~~~~~~~~~~~~~~~~~~~~~de~l~~~~~~~~~~~~~~~~~~~~~~~d~D~~lLL~~~--~p-- 215 (1007)
.. . .+.+.+..+++.+ .|
T Consensus 276 -----------------------~~----~-------------------------------~l~~~L~~il~~~~~~~ks 297 (621)
T 2vgl_A 276 -----------------------VR----G-------------------------------RLTECLETILNKAQEPPKS 297 (621)
T ss_dssp -----------------------HH----H-------------------------------HHHHHHHHHHHHHHSCCSC
T ss_pred -----------------------HH----H-------------------------------HHHHHHHHHHHHHCCCCCC
T ss_conf -----------------------99----9-------------------------------9999999999861347643
Q ss_pred -CCCCCCH--HHHHHHHHHHHHCCCH-HHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHHCC--CCCCCCCCEEEE-C
Q ss_conf -0148995--9999999999934998-889998999998613-788741359999999998799--741022252365-1
Q 001839 216 -LLWSHNS--AVVLAAAGVHWIMSPK-EDVKRIVKPLLFILR-SSGASKYVVLCNIQVFAKALP--HLFVPHYEDFFV-S 287 (1007)
Q Consensus 216 -LLqS~Ns--AVVlaaa~l~~~lap~-~~i~~iv~pLi~LL~-S~~eiqYvvL~~I~~L~~~~p--~lF~p~l~~Ffv-~ 287 (1007)
.|+|+|+ ||+++|+++++++.+. ..+..++++|.++|. +++|+||++|++|..|+...| ..|.+|...|+. +
T Consensus 298 ~~l~~~n~~~aVl~ea~~~i~~l~~~~~~~~~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~~~~~~~~~~~i~~~L 377 (621)
T 2vgl_A 298 KKVQHSNAKNAVLFEAISLIIHHDSEPNLLVRACNQLGQFLQHRETNLRYLALESMCTLASSEFSHEAVKTHIETVINAL 377 (621)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTTHHHHHTTHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_conf 45343423888999999999964884999999999999985489932599999999999843685799999999999996
Q ss_pred C-CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCC
Q ss_conf 6-898889999999998414988899999999982204883599999999999997296107999999999987421026
Q 001839 288 S-SDSYQSKALKLEILSSIVTESSISSVFKEFQDYIRDPDRRFAADTVAAIGLCARKLPKMANTCVEGLLALIRQELLTS 366 (1007)
Q Consensus 288 ~-~Dp~~IK~lKLeIL~~Lane~Nv~~IL~EL~~Yi~d~D~~fv~~aI~AIG~lA~k~p~~a~~cL~~Ll~LLs~~~~~s 366 (1007)
. +++.+||++||++|+.++|++|+..|++||..|+.+.|.+|+.++|++||.||.+++....||+++|+++++..
T Consensus 378 ~~d~d~~Ir~~aL~lL~~l~~~~Nv~~Iv~eL~~yl~~~d~~~~~~~v~~I~~la~k~~~~~~~~v~~Ll~ll~~~---- 453 (621)
T 2vgl_A 378 KTERDVSVRQRAVDLLYAMCDRSNAQQIVAEMLSYLETADYSIREEIVLKVAILAEKYAVDYTWYVDTILNLIRIA---- 453 (621)
T ss_dssp TTCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHH----
T ss_pred CCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH----
T ss_conf 5699875999999999998085359999999999998668888999999999999866896899999999999860----
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHH-HHHHHHCCCCHHHHHHHH----HHCCCCCCCCCCCCCCHH-HHHHHH
Q ss_conf 65679998630254899999999709830789-998521047123578654----210344567777522089-999999
Q 001839 367 DIESGNGEADVLIQSIISIKSIIKQDPSCHEK-LFRSLDSIKVPEARVMII----WMVGEYSSVGVKIPRMLT-TVLKYL 440 (1007)
Q Consensus 367 ~~~~~~~~~~vV~EsVvvIk~Liq~~P~~~~~-L~~~ld~I~~p~ArAsII----WLIGEY~~~~e~ip~ia~-dvLr~l 440 (1007)
...+..|++.+++++++++|+.+.. +-++++.+.+|.++++++ |++||||+.++..+++.| +++|.+
T Consensus 454 -------~~~v~~ev~~~l~~ii~~~~~~~~~~~~~l~~~l~~~~~~~~li~~~~wilGEy~~~~~~~~~~~p~~~l~~l 526 (621)
T 2vgl_A 454 -------GDYVSEEVWYRVIQIVINRDDVQGYAAKTVFEALQAPACHENLVKVGGYILGEFGNLIAGDPRSSPLIQFNLL 526 (621)
T ss_dssp -------GGGSCSHHHHHHHHHHGGGCSCHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHHTHHHHSSTTSCHHHHHHHH
T ss_pred -------CCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCHHHHHCCCCCCCHHHHHHHH
T ss_conf -------4213699999999997387669999999999987385334999999999964448774146777778999999
Q ss_pred HHHHCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHCCCCCCCCCCCCHHH
Q ss_conf 87301681999999999998886506798858999999999998702--9995698689999997059978988531001
Q 001839 441 AWCFKSEAVETKLQILNTTIKVLLCAKGGDMWTITRLFSYLLELAEC--DLNYDVRDRARFFKKLFSHNLCSQVPEETNA 518 (1007)
Q Consensus 441 ~k~F~~E~~~VKlqILtl~aKL~l~~p~e~~~~i~~L~qyvLeLa~~--D~n~DVRDRAr~y~~LL~~~~~~~~~~~~~~ 518 (1007)
.++|..|+..||+++||+++|++.+.|+ . ...++++|+.+++ |.|+||||||++||+|+..+..
T Consensus 527 ~~~~~~~~~~v~~~~Lta~~Kl~~~~p~-~----~~~i~~~l~~~~~~~~~d~evrdRA~~y~~Ll~~~~~--------- 592 (621)
T 2vgl_A 527 HSKFHLCSVPTRALLLSTYIKFVNLFPE-V----KATIQDVLRSDSQLKNADVELQQRAVEYLRLSTVAST--------- 592 (621)
T ss_dssp HHHHTTSCHHHHHHHHHHHHHHHHHCGG-G----HHHHHHHHSSHHHHSCSSHHHHHHHHHHHHHHHSSCS---------
T ss_pred HHHHCCCCHHHHHHHHHHHHHHHHHCHH-H----HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCHH---------
T ss_conf 9875348877999999999999987747-8----9999999999705899897999999999999856999---------
Q ss_pred HHCCCCCHHHHHHHHHCCCCCCCC
Q ss_conf 001686138889854027988788
Q 001839 519 LQENKDLPLVLVECIFRKQENLAA 542 (1007)
Q Consensus 519 ~~~~~d~~~~la~~lf~~~~p~~~ 542 (1007)
.+.+.++.++||++.
T Consensus 593 ---------~~~~~vl~~~P~~~~ 607 (621)
T 2vgl_A 593 ---------DILATVLEEMPPFPE 607 (621)
T ss_dssp ---------TTTTTTSSSCCCCCC
T ss_pred ---------HHHHHHHHCCCCCCC
T ss_conf ---------999888513898997
No 2
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=1.00 E-value=1 Score=522.05 Aligned_cols=442 Identities=29% Similarity=0.464 Sum_probs=382.5
Q ss_pred CCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHH-HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCC
Q ss_conf 9864521336879999986228999027799999999986007013-176699999988139990079999999998598
Q 001839 1 MAGIRLHVISPLVLVAVGKCARDPSVFVRKCAANALPKLHELRQEE-ITSAIEEIVGILLNDRSPGVVGAAAAAFASICP 79 (1007)
Q Consensus 1 MssIRVp~I~piv~~aIkk~~~D~SPYVRKtAA~AI~Kly~ldp~~-~~~~L~eil~~LL~D~sp~VvgsAv~Af~EIcP 79 (1007)
|++|+.+++.+.++.+|++++.|++|||||+||.|+.|+|+.+|+. ....+.+.+..+|.|+++.|.++|+.++.++|+
T Consensus 110 L~~i~~~~~~~~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~~~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~ 189 (591)
T 2vgl_B 110 MGCIRVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQMVEDQGFLDSLRDLIADSNPMVVANAVAALSEISE 189 (591)
T ss_dssp HHTCCSGGGHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTT
T ss_pred HHCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCHHHCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
T ss_conf 87589077899999999998179985899999999999985192414463589999999679984399999999999976
Q ss_pred CC-----CCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 97-----2212899999998589999335999999999722100366420111111000257874210000000113899
Q 001839 80 NN-----FTLIGRNYRNLCQILPDVEEWGQILLIEILLRYVVASHGLVKESIMSSLLCIESSHSEKDVFDVNVALEDNGI 154 (1007)
Q Consensus 80 ~r-----~dLihk~yrkLc~lL~d~dEWgQv~iL~lL~rY~r~~~~~~~p~~mf~~~~~~~~~~e~~~~~~~~~le~~~~ 154 (1007)
+. +++.++.+++||+.+.+++||+|+.++++|.+|++..
T Consensus 190 ~~~~~~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~------------------------------------ 233 (591)
T 2vgl_B 190 SHPNSNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPKD------------------------------------ 233 (591)
T ss_dssp SCCSCCSCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCCS------------------------------------
T ss_pred HCCCCCCHHCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCC------------------------------------
T ss_conf 37875404426999999987488788257899999999867998------------------------------------
Q ss_pred CCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 99766401232100000025432113577755556666576446898874699999951000148995999999999993
Q 001839 155 PSRTYDSELVNLVSRSYIEGLGEYLTRSSDTNARSSDLNGARFTSGKTNDDVKLLLQCTSPLLWSHNSAVVLAAAGVHWI 234 (1007)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~de~l~~~~~~~~~~~~~~~~~~~~~~~d~D~~lLL~~~~pLLqS~NsAVVlaaa~l~~~ 234 (1007)
+.+...+++.+.++|++.|++|+++|++++.+
T Consensus 234 ------------------------------------------------~~~~~~~l~~l~~~l~~~~~~V~~ea~~~i~~ 265 (591)
T 2vgl_B 234 ------------------------------------------------DREAQSICERVTPRLSHANSAVVLSAVKVLMK 265 (591)
T ss_dssp ------------------------------------------------HHHHHHHHHHHTTCSCSSTTHHHHHHHHHHHH
T ss_pred ------------------------------------------------HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_conf ------------------------------------------------59999999999998758984999999999999
Q ss_pred CCC-----HH----HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHC
Q ss_conf 499-----88----899989999986137887413599999999987997410222523651689888999999999841
Q 001839 235 MSP-----KE----DVKRIVKPLLFILRSSGASKYVVLCNIQVFAKALPHLFVPHYEDFFVSSSDSYQSKALKLEILSSI 305 (1007)
Q Consensus 235 lap-----~~----~i~~iv~pLi~LL~S~~eiqYvvL~~I~~L~~~~p~lF~p~l~~Ffv~~~Dp~~IK~lKLeIL~~L 305 (1007)
+.+ ++ .+.+++.+|++|+++++|+||++|.+|..++..+|..|.+|++.|||+++||.+||+.||++|+.+
T Consensus 266 l~~~~~~~~~~~~~~~~~~~~~L~~L~~~d~~vr~~aL~~l~~i~~~~p~~~~~~~~~~~~~~~d~~~Ir~~al~~L~~l 345 (591)
T 2vgl_B 266 FLELLPKDSDYYNMLLKKLAPPLVTLLSGEPEVQYVALRNINLIVQKRPEILKQEIKVFFVKYNDPIYVKLEKLDIMIRL 345 (591)
T ss_dssp SCCSCCBTTBSHHHHHHHTHHHHHHHTTSCHHHHHHHHHHHHHHHHHCCSTTTTCTTTTSCCTTSCHHHHHHHHHHHHHT
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHEECCCCHHHHHHHHHHHHHHH
T ss_conf 74024788799999999999999999669920899999999999986969899988755003699399999999999987
Q ss_pred CCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 49888999999999822048835999999999999972961079999999999874210266567999863025489999
Q 001839 306 VTESSISSVFKEFQDYIRDPDRRFAADTVAAIGLCARKLPKMANTCVEGLLALIRQELLTSDIESGNGEADVLIQSIISI 385 (1007)
Q Consensus 306 ane~Nv~~IL~EL~~Yi~d~D~~fv~~aI~AIG~lA~k~p~~a~~cL~~Ll~LLs~~~~~s~~~~~~~~~~vV~EsVvvI 385 (1007)
++++|+..|++||.+|+.+.|.+|+.+++++||.||.+++..+.||++.|+++++.. +..++.+++.++
T Consensus 346 ~~~~nv~~iv~~L~~~l~~~d~~~r~~~v~aI~~la~~~~~~~~~~v~~Ll~ll~~~-----------~~~v~~e~i~~l 414 (591)
T 2vgl_B 346 ASQANIAQVLAELKEYATEVDVDFVRKAVRAIGRCAIKVEQSAERCVSTLLDLIQTK-----------VNYVVQEAIVVI 414 (591)
T ss_dssp CCSSTHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTC-----------CHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCC-----------CHHHHHHHHHHH
T ss_conf 786239999999999986579999999999999999857467999999999998355-----------168999999999
Q ss_pred HHHHHCCCCHHHH----HHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf 9999709830789----998521047123578654210344567777522089999999873016819999999999988
Q 001839 386 KSIIKQDPSCHEK----LFRSLDSIKVPEARVMIIWMVGEYSSVGVKIPRMLTTVLKYLAWCFKSEAVETKLQILNTTIK 461 (1007)
Q Consensus 386 k~Liq~~P~~~~~----L~~~ld~I~~p~ArAsIIWLIGEY~~~~e~ip~ia~dvLr~l~k~F~~E~~~VKlqILtl~aK 461 (1007)
+.|++++|+.++. |++.++.+..|.++++++|++||||.. ++. ++++++.++++|..|+..||+++|++++|
T Consensus 415 ~~ii~~~p~~~~~~v~~L~~~l~~~~~~~~~~~~~wilGey~~~---~~~-~~~~l~~l~~~~~~~~~~vr~~~l~a~~K 490 (591)
T 2vgl_B 415 RDIFRKYPNKYESIIATLCENLDSLDEPDARAAMIWIVGEYAER---IDN-ADELLESFLEGFHDESTQVQLTLLTAIVK 490 (591)
T ss_dssp HHHHHHSCSSCCTTHHHHHHTTTTCCSHHHHHHHHHHHHTTCTT---CTT-HHHHHHHHSTTCSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCC---CCC-HHHHHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_conf 99999792057899999998887423789999999999703121---367-89999999986645988899999999999
Q ss_pred HHHHCCCCCHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHCCCCCHHHHHHHHHCCCCCC
Q ss_conf 865067988589999999999987029-9956986899999970599789885310010016861388898540279887
Q 001839 462 VLLCAKGGDMWTITRLFSYLLELAECD-LNYDVRDRARFFKKLFSHNLCSQVPEETNALQENKDLPLVLVECIFRKQENL 540 (1007)
Q Consensus 462 L~l~~p~e~~~~i~~L~qyvLeLa~~D-~n~DVRDRAr~y~~LL~~~~~~~~~~~~~~~~~~~d~~~~la~~lf~~~~p~ 540 (1007)
++.+.|++.. .+++++|+.+.+| .|+||||||++|++|+..+. ....+.++.++|++
T Consensus 491 l~~~~p~~~~----~~i~~ll~~~~~d~~d~evrdRA~~y~~ll~~~~------------------~~~~~~v~~~~p~~ 548 (591)
T 2vgl_B 491 LFLKKPSETQ----ELVQQVLSLATQDSDNPDLRDRGYIYWRLLSTDP------------------VTAKEVVLSEKPLI 548 (591)
T ss_dssp HHTTCCSTTH----HHHHHHHHHHHTTCCCHHHHHHHHHHHTTTTTCT------------------THHHHHHTSCCCCC
T ss_pred HHHCCCHHHH----HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCH------------------HHHHHHHCCCCCCC
T ss_conf 9961965799----9999999986535899679999999999977498------------------99999874899999
Q ss_pred CCCCCC-CC-----CCCCCCCHHHHHHCC
Q ss_conf 888997-76-----666677577984201
Q 001839 541 AASEPI-ND-----RFYLPGSLSQIVLHA 563 (1007)
Q Consensus 541 ~~~~~~-~~-----r~~~lGSLS~~~~~~ 563 (1007)
...+.. .. .+..+||||++++++
T Consensus 549 ~~~~~~~~~~~~~~~~~~~~tl~~~~~~~ 577 (591)
T 2vgl_B 549 SEETDLIEPTLLDELICHIGSLASVYHKP 577 (591)
T ss_dssp CSCSSCCCHHHHHHHHTTTTSSHHHHTSC
T ss_pred CCCCCCCCHHHHHHHHHHHCCCHHHHCCC
T ss_conf 97843247789999998738515552578
No 3
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=1.00 E-value=1 Score=465.78 Aligned_cols=438 Identities=14% Similarity=0.164 Sum_probs=351.3
Q ss_pred CCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCC
Q ss_conf 98645213368799999862289990277999999999860070131766999999881399900799999999985989
Q 001839 1 MAGIRLHVISPLVLVAVGKCARDPSVFVRKCAANALPKLHELRQEEITSAIEEIVGILLNDRSPGVVGAAAAAFASICPN 80 (1007)
Q Consensus 1 MssIRVp~I~piv~~aIkk~~~D~SPYVRKtAA~AI~Kly~ldp~~~~~~L~eil~~LL~D~sp~VvgsAv~Af~EIcP~ 80 (1007)
|++|+.+++++.++..|++++.|++|||||+||+|+.|+|+.+| +..+.+.+.+..+|+|+++.|+++|+.++.++|+.
T Consensus 131 L~~i~~~~~~~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p-~~v~~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~ 209 (618)
T 1w63_A 131 LGCMGSSEMCRDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVP-ELMEMFLPATKNLLNEKNHGVLHTSVVLLTEMCER 209 (618)
T ss_dssp HHHHCCHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCG-GGGGGGGGGTTTSTTCCCHHHHHHHHHHHHHHCCS
T ss_pred HHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCH-HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
T ss_conf 88629899999999999999759987999999999999998795-87999999999982799773999999999999983
Q ss_pred CCCCHHHHH----HHHHHHCCC---------------CCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCC
Q ss_conf 722128999----999985899---------------9933599999999972210036642011111100025787421
Q 001839 81 NFTLIGRNY----RNLCQILPD---------------VEEWGQILLIEILLRYVVASHGLVKESIMSSLLCIESSHSEKD 141 (1007)
Q Consensus 81 r~dLihk~y----rkLc~lL~d---------------~dEWgQv~iL~lL~rY~r~~~~~~~p~~mf~~~~~~~~~~e~~ 141 (1007)
..++ +.+| ..|+++|.+ .+||+|+.++++|.+|++.. |.. .
T Consensus 210 ~~~~-~~~~~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~-----~~~------~-------- 269 (618)
T 1w63_A 210 SPDM-LAHFRKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRND-----DDS------S-------- 269 (618)
T ss_dssp HHHH-HHHHHTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTC-----HHH------H--------
T ss_pred CHHH-HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCC-----HHH------H--------
T ss_conf 9588-9999998999999999987279995432268898709999999998738999-----799------9--------
Q ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCC--CCC
Q ss_conf 000000011389999766401232100000025432113577755556666576446898874699999951000--148
Q 001839 142 VFDVNVALEDNGIPSRTYDSELVNLVSRSYIEGLGEYLTRSSDTNARSSDLNGARFTSGKTNDDVKLLLQCTSPL--LWS 219 (1007)
Q Consensus 142 ~~~~~~~le~~~~~~~~~~~~~~~~~~~~~~~~~de~l~~~~~~~~~~~~~~~~~~~~~~~d~D~~lLL~~~~pL--LqS 219 (1007)
+ .-..+|.+.+.+. +++
T Consensus 270 ----------------------------------~---------------------------~~~~~L~~l~~~~~~~~~ 288 (618)
T 1w63_A 270 ----------------------------------E---------------------------AMNDILAQVATNTETSKN 288 (618)
T ss_dssp ----------------------------------H---------------------------TTHHHHHHHHHTSCCSST
T ss_pred ----------------------------------H---------------------------HHHHHHHHHHHCCCCCCC
T ss_conf ----------------------------------9---------------------------999999999735645554
Q ss_pred CCHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHHHCCCCCCCCCC-EEEECCCCCHHHHH
Q ss_conf 9959999999999934998-8899989999986137-8874135999999999879974102225-23651689888999
Q 001839 220 HNSAVVLAAAGVHWIMSPK-EDVKRIVKPLLFILRS-SGASKYVVLCNIQVFAKALPHLFVPHYE-DFFVSSSDSYQSKA 296 (1007)
Q Consensus 220 ~NsAVVlaaa~l~~~lap~-~~i~~iv~pLi~LL~S-~~eiqYvvL~~I~~L~~~~p~lF~p~l~-~Ffv~~~Dp~~IK~ 296 (1007)
.|.+|+++|+++++++.+. .....++++|.++|.+ ++++||++|.+|..++...|.+|.+|+. .|+|+++++.+||+
T Consensus 289 ~~~aV~~ea~~~i~~l~~~~~l~~~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~p~~~~~~~~~i~~~l~d~d~~Ir~ 368 (618)
T 1w63_A 289 VGNAILYETVLTIMDIKSESGLRVLAINILGRFLLNNDKNIRYVALTSLLKTVQTDHNAVQRHRSTIVDCLKDLDVSIKR 368 (618)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCSSTTTHHHHHHHHHHHHHHHHHHHGGGHHHHHHGGGSSCHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCCHHHHH
T ss_conf 47899999999999548877999999999999974799743799999999998608899999999999871599966999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 99999984149888999999999822048835999999999999972961079999999999874210266567999863
Q 001839 297 LKLEILSSIVTESSISSVFKEFQDYIRDPDRRFAADTVAAIGLCARKLPKMANTCVEGLLALIRQELLTSDIESGNGEAD 376 (1007)
Q Consensus 297 lKLeIL~~Lane~Nv~~IL~EL~~Yi~d~D~~fv~~aI~AIG~lA~k~p~~a~~cL~~Ll~LLs~~~~~s~~~~~~~~~~ 376 (1007)
+||++|+.+++++|+..|++||..|+.+.|.+|+.+++++||+||.+++....||++.|+++++.. ...
T Consensus 369 ~alelL~~l~~~~nv~~iv~eL~~~l~~~d~e~r~~~v~~I~~la~k~~~~~~~~v~~ll~lL~~~-----------~~~ 437 (618)
T 1w63_A 369 RAMELSFALVNGNNIRGMMKELLYFLDSCEPEFKADCASGIFLAAEKYAPSKRWHIDTIMRVLTTA-----------GSY 437 (618)
T ss_dssp HHHHHHHHHCCSSSTHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHT-----------GGG
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-----------CCH
T ss_conf 999999997164119999999999987288999999999999999985750889999999999863-----------531
Q ss_pred CHHHHHHHHHHHHHCCCCHHHH----HHHHHHC--CCCHHHHHHHHHHCCCCCCCCC-----------CCCCCHHHHHHH
Q ss_conf 0254899999999709830789----9985210--4712357865421034456777-----------752208999999
Q 001839 377 VLIQSIISIKSIIKQDPSCHEK----LFRSLDS--IKVPEARVMIIWMVGEYSSVGV-----------KIPRMLTTVLKY 439 (1007)
Q Consensus 377 vV~EsVvvIk~Liq~~P~~~~~----L~~~ld~--I~~p~ArAsIIWLIGEY~~~~e-----------~ip~ia~dvLr~ 439 (1007)
+..+++.+++++++++|+.+.. |++.++. ...+.++ .++|++|||++.+. ..|..+.++++.
T Consensus 438 v~~~~~~~l~~ii~~~p~l~~~~v~~L~~~l~~~~~~~~~~~-~~~wilGEy~~~i~~~~~~~~~~~~~~~~~~~~~l~~ 516 (618)
T 1w63_A 438 VRDDAVPNLIQLITNSVEMHAYTVQRLYKAILGDYSQQPLVQ-VAAWCIGEYGDLLVSGQCEEEEPIQVTEDEVLDILES 516 (618)
T ss_dssp SCSSHHHHHHHHHHHSCSTHHHHHHHHHHHHHHCCSCSHHHH-HHHHHHHHHHHHHTTCCCSSSCCCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHH-HHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHH
T ss_conf 479999999999956856899999999999745233289999-9999982358775146544212457788999999999
Q ss_pred HHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHH
Q ss_conf 98730168199999999999888650679885899999999999870299956986899999970599789885310010
Q 001839 440 LAWCFKSEAVETKLQILNTTIKVLLCAKGGDMWTITRLFSYLLELAECDLNYDVRDRARFFKKLFSHNLCSQVPEETNAL 519 (1007)
Q Consensus 440 l~k~F~~E~~~VKlqILtl~aKL~l~~p~e~~~~i~~L~qyvLeLa~~D~n~DVRDRAr~y~~LL~~~~~~~~~~~~~~~ 519 (1007)
+.+.| .++..||+++|++++|++.+.|+. . ..++.+|+.+..|.|+||||||++||+|+....
T Consensus 517 ~l~~~-~~~~~vr~~~lta~~Kl~~~~~~~-~----~~l~~~L~~~~~~~d~evrdRA~~y~~ll~~~~----------- 579 (618)
T 1w63_A 517 VLISN-MSTSVTRGYALTAIMKLSTRFTCT-V----NRIKKVVSIYGSSIDVELQQRAVEYNALFKKYD----------- 579 (618)
T ss_dssp HHHST-TCCHHHHHHHHHHHHHHHTTCSSC-H----HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTT-----------
T ss_pred HHHCC-CCCHHHHHHHHHHHHHHHHHCCCH-H----HHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCH-----------
T ss_conf 97444-797999999999999999858446-9----999999998358999899999999999980749-----------
Q ss_pred HCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCC
Q ss_conf 0168613888985402798878889977666667757798420189
Q 001839 520 QENKDLPLVLVECIFRKQENLAASEPINDRFYLPGSLSQIVLHAAP 565 (1007)
Q Consensus 520 ~~~~d~~~~la~~lf~~~~p~~~~~~~~~r~~~lGSLS~~~~~~~~ 565 (1007)
.+.+.++.++||++. + ..|..|++++|.-.
T Consensus 580 --------~~~~~vl~~~P~~~~------~--~~~~~~~~~~~~~~ 609 (618)
T 1w63_A 580 --------HMRSALLERMPVMEK------V--TTNGPSEIVQTNGE 609 (618)
T ss_dssp --------THHHHHHSCCCCCCC-----------------------
T ss_pred --------HHHHHHHHCCCCCCC------C--CCCCCCCCCCCCCC
T ss_conf --------999877323899985------6--66886533577788
No 4
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=1.00 E-value=1 Score=222.16 Aligned_cols=221 Identities=12% Similarity=0.062 Sum_probs=181.0
Q ss_pred CCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCC
Q ss_conf 98645213368799999862289990277999999999860070131766999999881399900799999999985989
Q 001839 1 MAGIRLHVISPLVLVAVGKCARDPSVFVRKCAANALPKLHELRQEEITSAIEEIVGILLNDRSPGVVGAAAAAFASICPN 80 (1007)
Q Consensus 1 MssIRVp~I~piv~~aIkk~~~D~SPYVRKtAA~AI~Kly~ldp~~~~~~L~eil~~LL~D~sp~VvgsAv~Af~EIcP~ 80 (1007)
||+||.+++++.+...|++|+.|.+|||||+|++|+.|+|..+| +..+.+.+.+..+++|++|+|+.+|+.++.++|..
T Consensus 128 L~~I~~~~m~~~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~p-e~v~~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~ 206 (355)
T 3tjz_B 128 LCQITDSTMLQAIERYMKQAIVDKVPSVSSSALVSSLHLLKCSF-DVVKRWVNEAQEAASSDNIMVQYHALGLLYHVRKN 206 (355)
T ss_dssp HHHHCCTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCH-HHHHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHTT
T ss_pred HHCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH
T ss_conf 86579789999999999998589989999999999999933689-99999999999996499810899999999999862
Q ss_pred CCCCHHHHHHHHHHHCCCC---CHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 7221289999999858999---9335999999999722100366420111111000257874210000000113899997
Q 001839 81 NFTLIGRNYRNLCQILPDV---EEWGQILLIEILLRYVVASHGLVKESIMSSLLCIESSHSEKDVFDVNVALEDNGIPSR 157 (1007)
Q Consensus 81 r~dLihk~yrkLc~lL~d~---dEWgQv~iL~lL~rY~r~~~~~~~p~~mf~~~~~~~~~~e~~~~~~~~~le~~~~~~~ 157 (1007)
. ...+.+|...+.+. +||+|+.+|+++.+|++... |
T Consensus 207 d----~~a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~----~--------------------------------- 245 (355)
T 3tjz_B 207 D----RLAVSKMISKFTRHGLKSPFAYCMMIRVASRQLEDED----G--------------------------------- 245 (355)
T ss_dssp C----HHHHHHHHHHHHSSCCSCHHHHHHHHHHHTCC-------------------------------------------
T ss_pred C----HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCC----H---------------------------------
T ss_conf 6----6889999999766787582899999999998664463----6---------------------------------
Q ss_pred CCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf 66401232100000025432113577755556666576446898874699999951000148995999999999993499
Q 001839 158 TYDSELVNLVSRSYIEGLGEYLTRSSDTNARSSDLNGARFTSGKTNDDVKLLLQCTSPLLWSHNSAVVLAAAGVHWIMSP 237 (1007)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~de~l~~~~~~~~~~~~~~~~~~~~~~~d~D~~lLL~~~~pLLqS~NsAVVlaaa~l~~~lap 237 (1007)
.....+++.+.+.|+|.|+|||++|+++++.+..
T Consensus 246 ----------------------------------------------~~~~~~~~~l~~~L~~~~~aVvyEa~k~I~~l~~ 279 (355)
T 3tjz_B 246 ----------------------------------------------SRDSPLFDFIESCLRNKHEMVVYEAASAIVNLPG 279 (355)
T ss_dssp ---------------------------------------------------------CCCCCSSHHHHHHHHHHHTC---
T ss_pred ----------------------------------------------HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCC
T ss_conf ----------------------------------------------5689999999999828981999999999993658
Q ss_pred --HHHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCC-HHHHHHHHHHHHHCCCCC
Q ss_conf --8889998999998613-78874135999999999879974102225236516898-889999999998414988
Q 001839 238 --KEDVKRIVKPLLFILR-SSGASKYVVLCNIQVFAKALPHLFVPHYEDFFVSSSDS-YQSKALKLEILSSIVTES 309 (1007)
Q Consensus 238 --~~~i~~iv~pLi~LL~-S~~eiqYvvL~~I~~L~~~~p~lF~p~l~~Ffv~~~Dp-~~IK~lKLeIL~~Lane~ 309 (1007)
...+..++.+|..+|. +++|+||++|++|..++..+|+.++.+-....-+.+|+ ..|..+.+..|.+-.+|.
T Consensus 280 ~~~~~~~~a~~~L~~fLss~d~niryvaLr~L~~l~~~~P~~v~~~n~~ie~li~d~n~sI~t~Aittllktg~e~ 355 (355)
T 3tjz_B 280 CSAKELAPAVSVLQLFCSSPKAALRYAAVRTLNKVAMKHPSAVTACNLDLENLVTDANRSIATLAITTLLKTGSEG 355 (355)
T ss_dssp --------CCCTHHHHHHSSSSSSHHHHHHCC--------------------------------------------
T ss_pred CCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCC
T ss_conf 8899999999999999769991489999999999998794999999999998706986769999999863136899
No 5
>2g30_A AP-2 complex subunit beta-1; alpha-helical ARH peptide, platform domain, sandwich domain, endocytosis, adaptor, endocytosis/exocytosis complex; 1.60A {Homo sapiens} SCOP: b.1.10.1 d.105.1.1 PDB: 1e42_A 3h1z_A 3hs9_A 2iv9_A 2iv8_A
Probab=1.00 E-value=1 Score=171.63 Aligned_cols=222 Identities=15% Similarity=0.183 Sum_probs=175.6
Q ss_pred CCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCEEEEEEEEEECCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCCCC
Q ss_conf 44685100233457898049998407988899971899999895798752326951233100023454432101244566
Q 001839 721 QVKAKSYTLLDPANGNGLKVYYSFSSEASTISPQLVCLETFFENCSSETMSEVTLVDEESHKALDLADLTLATTASSLTS 800 (1007)
Q Consensus 721 ~~~~k~~~LL~~~~g~GL~v~Y~F~r~p~~~s~~mv~v~l~f~N~s~~~i~~i~i~~~~~~~~~~g~~~~~~~~~~~~~~ 800 (1007)
+++|+ +.||.+..|+||.|.|+|.|+ ..+++++++|+|++.++|.++.|.-.+ -.=|+.
T Consensus 28 ~~~p~-~~~l~~~~g~GLeI~g~f~r~-----~g~i~l~l~~~N~s~~~is~faIQfNk---NsFGL~------------ 86 (258)
T 2g30_A 28 YVAPK-AVWLPAVKAKGLEISGTFTHR-----QGHIYMEMNFTNKALQHMTDFAIQFNK---NSFGVI------------ 86 (258)
T ss_dssp CCCCC-EEEECGGGTTTEEEEEEEEEE-----TTEEEEEEEEEECSSSCBCCCEEEECC---BTTCCE------------
T ss_pred CCCCH-HHCCCCCCCCCEEEEEEEEEE-----CCEEEEEEEEECCCCCCEEEEEEEECC---CCCCCC------------
T ss_conf 77832-212465578968999999970-----998999999862774530015899736---654755------------
Q ss_pred CCCCCCCCCCCCC-CCCCCCCEEEEEEEEECCCCCCCC----EEE--EEECCCEEEEEEECCCCCCCCC-CCCCHHHHHH
Q ss_conf 8999976567766-435999736899999727997531----089--9975971115871696322344-2389889999
Q 001839 801 QSDLPTLVPMEEI-TSLEPGQTMKRILEVRFHHHLLPL----KLA--LHCNGKKLPVKLRPDIGYFIKP-VPMDMETFIE 872 (1007)
Q Consensus 801 ~~~~~~~~~f~~i-~~L~p~~~~~~~~~idF~~~~~~~----~~~--l~~~~~~~~v~i~p~vgel~~p-~~ms~~~f~~ 872 (1007)
...+.++ ..|+||+++++.+.|.|++..+.+ ++| |+++.+.|++.+.+|+++|+.| ..|+..+|.+
T Consensus 87 ------p~~~~~~~~~L~pgqs~~v~lpl~~~~~~~~~~p~~~LQVAIKtn~~vfYF~~~ipl~~l~~e~g~m~~~~F~~ 160 (258)
T 2g30_A 87 ------PSTPLAIHTPLMPNQSIDVSLPLNTLGPVMKMEPLNNLQVAVKNNIDVFYFSCLIPLNVLFVEDGKMERQVFLA 160 (258)
T ss_dssp ------ESSCCCCCSCBCTTCEEEEEEEEESCSCBCCCSSTTEEEEEEECSSCEEEEEEECCGGGGBCSCCCCCHHHHHH
T ss_pred ------CCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCHHEEEEECCCCEEEEEEECCHHHHCCCCCCCCHHHHHH
T ss_conf ------17412488753899847999866148855678877311033315896499971058899337767669999999
Q ss_pred HHHCCCCCCCCCCCEECCCCCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCEEEEE
Q ss_conf 86058997433210001467676666653010000013466778998765203411220476323446898997014310
Q 001839 873 MESRLPGMFEYARSCTFTDHLGEVDKDTDESSLLKDKYLVICESLASKMLSNANIFLVSVDMPVAAKFDDASGLSLRFSS 952 (1007)
Q Consensus 873 ~~~~L~GM~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~an~~~v~~~~~~~~~~~~~~~~~~rfa~ 952 (1007)
....+++|||. +.+++.- ..+ .....+-+...|+..|.-- ..++ ...++|++
T Consensus 161 ~Wk~ip~~nE~--~~~i~~~--~~~-----------------~~~i~~kL~~~nif~Va~r-----~~~~--q~~ly~S~ 212 (258)
T 2g30_A 161 TWKDIPNENEL--QFQIKEC--HLN-----------------ADTVSSKLQNNNVYTIAKR-----NVEG--QDMLYQSL 212 (258)
T ss_dssp HHHHSCGGGCE--EEEETTC--CCC-----------------HHHHHHHHHHTTCEEEEEE-----EETT--EEEEEEEE
T ss_pred HHHHCCCCCCE--EEECCCC--CCC-----------------HHHHHHHHHHCCEEEEEEE-----CCCC--CCEEEEEE
T ss_conf 98648886613--6854667--679-----------------8999999987784999710-----1788--70699999
Q ss_pred CCCCCCCEEEEEEEECCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHC
Q ss_conf 0236885089999832666898620789705405689888999998610
Q 001839 953 EILGNSVPCLITITVEGKCSEPLKVSAKVNCEETVFGLNLLNRIVNFLV 1001 (1007)
Q Consensus 953 ~t~~~~~~~lit~~~~~~~~~~~~~~~~vn~e~~v~g~~l~~~~~~~~~ 1001 (1007)
+| .++.++|++|++..+ ++ ++++.++||+++++.++.+.+..+|.
T Consensus 213 kt-~n~i~vL~el~~~~~--~~-~v~l~vks~~~~i~~li~~~~~~~l~ 257 (258)
T 2g30_A 213 KL-TNGIWILAELRIQPG--NP-NYTLSLKCRAPEVSQYIYQVYDSILK 257 (258)
T ss_dssp EB-TTSCEEEEEEEECSS--CS-SEEEEEEESSGGGHHHHHHHHHHHHH
T ss_pred EC-CCCCEEEEEEEECCC--CC-CEEEEEECCCCHHHHHHHHHHHHHHH
T ss_conf 92-599589999998069--98-27999966982078999999999962
No 6
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=1.00 E-value=1 Score=101.46 Aligned_cols=285 Identities=12% Similarity=0.035 Sum_probs=125.8
Q ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCC--CCCCHHHHHH
Q ss_conf 9999862289990277999999999860-070131766999999881399900799999999985989--7221289999
Q 001839 14 LVAVGKCARDPSVFVRKCAANALPKLHE-LRQEEITSAIEEIVGILLNDRSPGVVGAAAAAFASICPN--NFTLIGRNYR 90 (1007)
Q Consensus 14 ~~aIkk~~~D~SPYVRKtAA~AI~Kly~-ldp~~~~~~L~eil~~LL~D~sp~VvgsAv~Af~EIcP~--r~dLihk~yr 90 (1007)
+..+...+.+.++.||+.|+.++.++.. +.|+.....++..+...+ |.++.|...++.++..+++. ..+..+....
T Consensus 12 i~~l~~~l~s~~~~~R~~A~~~l~~i~~~~~~~~~~~~l~~~L~~~~-d~~~~vr~~~~~~L~~~~~~~~~~~~~~~ll~ 90 (588)
T 1b3u_A 12 IAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTI-YDEDEVLLALAEQLGTFTTLVGGPEYVHCLLP 90 (588)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHTHHHHHHHSCHHHHHHTHHHHHHHTC-CCCHHHHHHHHHHHTTCSGGGTSGGGGGGGHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
T ss_conf 99999985062199999999719999998697989998998898755-78589999999999778760585989999899
Q ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHH--HHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCH-HHHHHH
Q ss_conf 999858999933599999999972210036642011--11110002578742100000001138999976640-123210
Q 001839 91 NLCQILPDVEEWGQILLIEILLRYVVASHGLVKESI--MSSLLCIESSHSEKDVFDVNVALEDNGIPSRTYDS-ELVNLV 167 (1007)
Q Consensus 91 kLc~lL~d~dEWgQv~iL~lL~rY~r~~~~~~~p~~--mf~~~~~~~~~~e~~~~~~~~~le~~~~~~~~~~~-~~~~~~ 167 (1007)
-|++++.+-++--+...++.|...+.. ..++.. .+.....+ +.. +..... ..+..+
T Consensus 91 ~L~~l~~~~~~~vR~~a~~~L~~l~~~---~~~~~~~~~l~~~l~~--------------l~~----~~~~~~R~~a~~~ 149 (588)
T 1b3u_A 91 PLESLATVEETVVRDKAVESLRAISHE---HSPSDLEAHFVPLVKR--------------LAG----GDWFTSRTSACGL 149 (588)
T ss_dssp HHHHHTTSSCHHHHHHHHHHHHHHHTT---SCHHHHHHTHHHHHHH--------------HHT----CSSHHHHHHHGGG
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHHHH---CCHHHHHHHHHHHHHH--------------HHC----CCCCHHHHHHHHH
T ss_conf 999987476079999999999999997---9999999999999999--------------850----7771799999999
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCC---CH-HHHHH
Q ss_conf 000002543211357775555666657644689887469999995100014899599999999999349---98-88999
Q 001839 168 SRSYIEGLGEYLTRSSDTNARSSDLNGARFTSGKTNDDVKLLLQCTSPLLWSHNSAVVLAAAGVHWIMS---PK-EDVKR 243 (1007)
Q Consensus 168 ~~~~~~~~de~l~~~~~~~~~~~~~~~~~~~~~~~d~D~~lLL~~~~pLLqS~NsAVVlaaa~l~~~la---p~-~~i~~ 243 (1007)
...++. ...+.....++..+..+++..++.|-.++++.+-.++ +. .....
T Consensus 150 l~~~~~--------------------------~~~~~~~~~l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~ 203 (588)
T 1b3u_A 150 FSVCYP--------------------------RVSSAVKAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSE 203 (588)
T ss_dssp HHHHTT--------------------------TSCHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHHHHHHT
T ss_pred HHHHHH--------------------------HCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCHHHHHHH
T ss_conf 999998--------------------------569999999999999984899788999999989999998167767999
Q ss_pred HHHHHHHHHCC-CCCCHHHHHHHHHHHHHHCCC-CCCCCCCEEE-ECCCCC-HHHHHHHHHHHHHCCCCC---C-HHHHH
Q ss_conf 89999986137-887413599999999987997-4102225236-516898-889999999998414988---8-99999
Q 001839 244 IVKPLLFILRS-SGASKYVVLCNIQVFAKALPH-LFVPHYEDFF-VSSSDS-YQSKALKLEILSSIVTES---S-ISSVF 315 (1007)
Q Consensus 244 iv~pLi~LL~S-~~eiqYvvL~~I~~L~~~~p~-lF~p~l~~Ff-v~~~Dp-~~IK~lKLeIL~~Lane~---N-v~~IL 315 (1007)
+...|..++.. ..++|..++..+..++...+. .+.+++..++ -...|+ ..+|....+.|..++..- . ...++
T Consensus 204 l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~ 283 (588)
T 1b3u_A 204 IIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLV 283 (588)
T ss_dssp HHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCHHHHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCHHHHHHTHH
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHH
T ss_conf 99999988249928899989999999998579888887899999998069977899999999999999819521055899
Q ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHHHCCC
Q ss_conf 9999822048835999999999999972961
Q 001839 316 KEFQDYIRDPDRRFAADTVAAIGLCARKLPK 346 (1007)
Q Consensus 316 ~EL~~Yi~d~D~~fv~~aI~AIG~lA~k~p~ 346 (1007)
.-|...+.+.+.+.+..+..++|.++...+.
T Consensus 284 ~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~ 314 (588)
T 1b3u_A 284 PAFQNLMKDCEAEVRAAASHKVKEFCENLSA 314 (588)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHHHTSCT
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHHHHCH
T ss_conf 9999985899589999999879999997274
No 7
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=1.00 E-value=1 Score=100.78 Aligned_cols=373 Identities=12% Similarity=0.085 Sum_probs=215.7
Q ss_pred CCCCCHHHHHHHHHHHHHHHH-----CCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHC----CCCC-CCHHHHHH
Q ss_conf 289990277999999999860-----0701317669999998813999007999999999859----8972-21289999
Q 001839 21 ARDPSVFVRKCAANALPKLHE-----LRQEEITSAIEEIVGILLNDRSPGVVGAAAAAFASIC----PNNF-TLIGRNYR 90 (1007)
Q Consensus 21 ~~D~SPYVRKtAA~AI~Kly~-----ldp~~~~~~L~eil~~LL~D~sp~VvgsAv~Af~EIc----P~r~-dLihk~yr 90 (1007)
..+.++.||..|+..+-+... +++ +.+..+...+-.+|.|.++.|...+..++.+|. |+.| +++.
T Consensus 57 ~~~~~~~vR~~a~~~Lkn~i~~~w~~~~~-~~~~~ik~~ll~~l~~~~~~vr~~~a~~i~~ia~~~~~~~wp~ll~---- 131 (852)
T 4fdd_A 57 LKSEDEPTRSLSGLILKNNVKAHFQNFPN-GVTDFIKSECLNNIGDSSPLIRATVGILITTIASKGELQNWPDLLP---- 131 (852)
T ss_dssp CTTSCHHHHHHHHHHHHHHTTTSGGGCCH-HHHHHHHHHHHTTTTCSSHHHHHHHHHHHHHHHHHTTTTTCTTHHH----
T ss_pred CCCCCHHHHHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHH----
T ss_conf 68898679999999999989874477999-9999999999998749989999999999999998648135689999----
Q ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCC
Q ss_conf 99985899993359999999997221003664201111110002578742100000001138999976640123210000
Q 001839 91 NLCQILPDVEEWGQILLIEILLRYVVASHGLVKESIMSSLLCIESSHSEKDVFDVNVALEDNGIPSRTYDSELVNLVSRS 170 (1007)
Q Consensus 91 kLc~lL~d~dEWgQv~iL~lL~rY~r~~~~~~~p~~mf~~~~~~~~~~e~~~~~~~~~le~~~~~~~~~~~~~~~~~~~~ 170 (1007)
.|++.+.+-++..+-..+..|...+....
T Consensus 132 ~L~~~l~~~~~~~r~~al~~L~~i~~~~~--------------------------------------------------- 160 (852)
T 4fdd_A 132 KLCSLLDSEDYNTCEGAFGALQKICEDSA--------------------------------------------------- 160 (852)
T ss_dssp HHHHHHSCSSHHHHHHHHHHHHHHHHHHT---------------------------------------------------
T ss_pred HHHHHHCCCCHHHHHHHHHHHHHHHHHHH---------------------------------------------------
T ss_conf 99998709998999999999999999857---------------------------------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCC---HH---HHHHH
Q ss_conf 0025432113577755556666576446898874699999951000148995999999999993499---88---89998
Q 001839 171 YIEGLGEYLTRSSDTNARSSDLNGARFTSGKTNDDVKLLLQCTSPLLWSHNSAVVLAAAGVHWIMSP---KE---DVKRI 244 (1007)
Q Consensus 171 ~~~~~de~l~~~~~~~~~~~~~~~~~~~~~~~d~D~~lLL~~~~pLLqS~NsAVVlaaa~l~~~lap---~~---~i~~i 244 (1007)
+ .+. ...+......++..+..++++.++.|-.+|++++..+.. .. .+..+
T Consensus 161 -----~-~~~------------------~~~~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~~~~~~~~~~ 216 (852)
T 4fdd_A 161 -----E-ILD------------------SDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLHIDSF 216 (852)
T ss_dssp -----T-HHH------------------HCSSSSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCHHHHTSHHHH
T ss_pred -----H-HHC------------------HHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_conf -----8-756------------------3431332999999999985679789999999999999864638799889999
Q ss_pred HHHHHHHHCC-CCCCHHHHHHHHHHHHHHCCCCCCCCCCEEEE----C-CCCCHHHHHHHHHHHHHCCCCCC--------
Q ss_conf 9999986137-88741359999999998799741022252365----1-68988899999999984149888--------
Q 001839 245 VKPLLFILRS-SGASKYVVLCNIQVFAKALPHLFVPHYEDFFV----S-SSDSYQSKALKLEILSSIVTESS-------- 310 (1007)
Q Consensus 245 v~pLi~LL~S-~~eiqYvvL~~I~~L~~~~p~lF~p~l~~Ffv----~-~~Dp~~IK~lKLeIL~~Lane~N-------- 310 (1007)
...|+.++.. +.+++..++..+..++..+|..+.+|+..++- . .++...++...++.+..++....
T Consensus 217 l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~~~~~~~~~ 296 (852)
T 4fdd_A 217 IENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRH 296 (852)
T ss_dssp HHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTTHHHHHTTT
T ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHH
T ss_conf 99999871799778999999999999985779899889999999998706996899999999999986036579887888
Q ss_pred HHHHHHHHHHHH-----------CC-----------CCHHHHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHHHHCCCC
Q ss_conf 999999999822-----------04-----------88359999999999999729610-79999999999874210266
Q 001839 311 ISSVFKEFQDYI-----------RD-----------PDRRFAADTVAAIGLCARKLPKM-ANTCVEGLLALIRQELLTSD 367 (1007)
Q Consensus 311 v~~IL~EL~~Yi-----------~d-----------~D~~fv~~aI~AIG~lA~k~p~~-a~~cL~~Ll~LLs~~~~~s~ 367 (1007)
+..++.-+.... .+ .+..++..+..+++.++...+.. ....+..+..++..
T Consensus 297 ~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~~~~~~l~~~l~~~l~~------ 370 (852)
T 4fdd_A 297 LPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRDELLPHILPLLKELLFH------ 370 (852)
T ss_dssp HHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHTC------
T ss_pred HHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCC------
T ss_conf 98899999987578676799866984432224564011169999999999998746187899999999998559------
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHCCCCH---H-HH----HHHHHHCCCCHHHHHHHHHHCCCCCCCCC--CCCCCHHHHH
Q ss_conf 5679998630254899999999709830---7-89----99852104712357865421034456777--7522089999
Q 001839 368 IESGNGEADVLIQSIISIKSIIKQDPSC---H-EK----LFRSLDSIKVPEARVMIIWMVGEYSSVGV--KIPRMLTTVL 437 (1007)
Q Consensus 368 ~~~~~~~~~vV~EsVvvIk~Liq~~P~~---~-~~----L~~~ld~I~~p~ArAsIIWLIGEY~~~~e--~ip~ia~dvL 437 (1007)
.+..+-..++..+..|....+.. + .. +.+.+.+ ..+..|.+.+|.+|.++.... ........++
T Consensus 371 -----~~~~~R~aa~~alg~i~~~~~~~~~~~l~~~l~~l~~~l~d-~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll 444 (852)
T 4fdd_A 371 -----HEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSD-KKALVRSITCWTLSRYAHWVVSQPPDTYLKPLM 444 (852)
T ss_dssp -----SSHHHHHHHHHHHHHTTTTTHHHHGGGHHHHHHHHHHHTTC-SSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHH
T ss_pred -----CCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_conf -----98899999999999998635688998799999999987179-988999999999999998861104789999999
Q ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
Q ss_conf 999873016819999999999988865067988589999999999987
Q 001839 438 KYLAWCFKSEAVETKLQILNTTIKVLLCAKGGDMWTITRLFSYLLELA 485 (1007)
Q Consensus 438 r~l~k~F~~E~~~VKlqILtl~aKL~l~~p~e~~~~i~~L~qyvLeLa 485 (1007)
..+.+...+....||.....+...+.-.......+.+..+++.++.+.
T Consensus 445 ~~L~~~L~d~~~~vr~~a~~aL~~l~~~~~~~l~~~l~~ll~~L~~~l 492 (852)
T 4fdd_A 445 TELLKRILDSNKRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAF 492 (852)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999858988899999999999999736766767999999999999
No 8
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=1.00 E-value=1 Score=96.46 Aligned_cols=97 Identities=10% Similarity=0.032 Sum_probs=57.4
Q ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
Q ss_conf 99862289990277999999999860070131766999999881399900799999999985989722128999999985
Q 001839 16 AVGKCARDPSVFVRKCAANALPKLHELRQEEITSAIEEIVGILLNDRSPGVVGAAAAAFASICPNNFTLIGRNYRNLCQI 95 (1007)
Q Consensus 16 aIkk~~~D~SPYVRKtAA~AI~Kly~ldp~~~~~~L~eil~~LL~D~sp~VvgsAv~Af~EIcP~r~dLihk~yrkLc~l 95 (1007)
.+-+++.+.+.-+||.+.+++..+.+-+| +..-..+..+.+-|+|+++.|.+.|+.++..|... +++......+.+.
T Consensus 74 ~vik~~~s~~~~~Krl~Yl~~~~~~~~~~-e~~~l~in~l~kDL~~~n~~vr~lAL~~L~~i~~~--~~~~~l~~~l~~~ 150 (618)
T 1w63_A 74 ECLKLIASQKFTDKRIGYLGAMLLLDERQ-DVHLLMTNCIKNDLNHSTQFVQGLALCTLGCMGSS--EMCRDLAGEVEKL 150 (618)
T ss_dssp HHHHHHHSSSHHHHHHHHHHHHHHCCCCH-HHHHHHHHHHHHHHSCSSSHHHHHHHHHHHHHCCH--HHHHHHHHHHHHH
T ss_pred HHHHHHCCCCHHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCH--HHHHHHHHHHHHH
T ss_conf 99999818866888879999999817891-89999999998766898784899999998862989--9999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHH
Q ss_conf 89999335999999999722
Q 001839 96 LPDVEEWGQILLIEILLRYV 115 (1007)
Q Consensus 96 L~d~dEWgQv~iL~lL~rY~ 115 (1007)
|.+-+++-.-..+-.+.+..
T Consensus 151 L~~~~~~VRk~A~~al~~l~ 170 (618)
T 1w63_A 151 LKTSNSYLRKKAALCAVHVI 170 (618)
T ss_dssp HHSCCHHHHHHHHHHHHHHH
T ss_pred HCCCCHHHHHHHHHHHHHHH
T ss_conf 75998799999999999999
No 9
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=1.00 E-value=1 Score=96.31 Aligned_cols=382 Identities=11% Similarity=0.038 Sum_probs=211.9
Q ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
Q ss_conf 99986228999027799999999986007013176699999988139990079999999998598972212899999998
Q 001839 15 VAVGKCARDPSVFVRKCAANALPKLHELRQEEITSAIEEIVGILLNDRSPGVVGAAAAAFASICPNNFTLIGRNYRNLCQ 94 (1007)
Q Consensus 15 ~aIkk~~~D~SPYVRKtAA~AI~Kly~ldp~~~~~~L~eil~~LL~D~sp~VvgsAv~Af~EIcP~r~dLihk~yrkLc~ 94 (1007)
..|-+++.+.++.+||.+.+++..+.+.+| +....++..+.+.|+|++|.|.+.|+.++..+... ++.......+.+
T Consensus 52 ~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~-e~~~l~~n~l~kdL~~~n~~ir~~AL~~L~~i~~~--~~~~~l~~~l~~ 128 (591)
T 2vgl_B 52 PDVVNCMQTDNLELKKLVYLYLMNYAKSQP-DMAIMAVNSFVKDCEDPNPLIRALAVRTMGCIRVD--KITEYLCEPLRK 128 (591)
T ss_dssp HHHHHTTSSSCHHHHHHHHHHHHHHHHHSH-HHHHTTHHHHGGGSSSSSHHHHHHHHHHHHTCCSG--GGHHHHHHHHHH
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHCCCCC-HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCHH--HHHHHHHHHHHH
T ss_conf 999988179989999999999999866580-68999999999776999999999999998758907--789999999999
Q ss_pred HCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCC
Q ss_conf 58999933599999999972210036642011111100025787421000000011389999766401232100000025
Q 001839 95 ILPDVEEWGQILLIEILLRYVVASHGLVKESIMSSLLCIESSHSEKDVFDVNVALEDNGIPSRTYDSELVNLVSRSYIEG 174 (1007)
Q Consensus 95 lL~d~dEWgQv~iL~lL~rY~r~~~~~~~p~~mf~~~~~~~~~~e~~~~~~~~~le~~~~~~~~~~~~~~~~~~~~~~~~ 174 (1007)
.|.|-++.-+-.....|.+..+.. |.
T Consensus 129 ~L~d~~~~VRk~A~~al~~i~~~~-----p~------------------------------------------------- 154 (591)
T 2vgl_B 129 CLKDEDPYVRKTAAVCVAKLHDIN-----AQ------------------------------------------------- 154 (591)
T ss_dssp HSSCSCHHHHHHHHHHHHHHHHSS-----CC-------------------------------------------------
T ss_pred HCCCCCHHHHHHHHHHHHHHHHHC-----HH-------------------------------------------------
T ss_conf 817998589999999999998519-----24-------------------------------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCHH-------HHHHHHHH
Q ss_conf 43211357775555666657644689887469999995100014899599999999999349988-------89998999
Q 001839 175 LGEYLTRSSDTNARSSDLNGARFTSGKTNDDVKLLLQCTSPLLWSHNSAVVLAAAGVHWIMSPKE-------DVKRIVKP 247 (1007)
Q Consensus 175 ~de~l~~~~~~~~~~~~~~~~~~~~~~~d~D~~lLL~~~~pLLqS~NsAVVlaaa~l~~~lap~~-------~i~~iv~p 247 (1007)
.=++ .-++..+..+|...|+.|+.+|+.++..+++.. ....+...
T Consensus 155 ---------------------------~~~~-~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~ 206 (591)
T 2vgl_B 155 ---------------------------MVED-QGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLLDLNPQNINK 206 (591)
T ss_dssp ---------------------------CHHH-HHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHH
T ss_pred ---------------------------HCCC-CCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCHHCCHHHHHH
T ss_conf ---------------------------1446-358999999967998439999999999997637875404426999999
Q ss_pred HHHHHCC-CCCCHHHHHHHHHHHHHHCCC---CCCCCCCEEEE-CCCCCHHHHHHHHHHHHHCCC-----CCCHHHHHHH
Q ss_conf 9986137-887413599999999987997---41022252365-168988899999999984149-----8889999999
Q 001839 248 LLFILRS-SGASKYVVLCNIQVFAKALPH---LFVPHYEDFFV-SSSDSYQSKALKLEILSSIVT-----ESSISSVFKE 317 (1007)
Q Consensus 248 Li~LL~S-~~eiqYvvL~~I~~L~~~~p~---lF~p~l~~Ffv-~~~Dp~~IK~lKLeIL~~Lan-----e~Nv~~IL~E 317 (1007)
|+..+.. ++-.|-.+|+.+.. ..|. .....+..+.- ..+....|+......+..+.+ ++-+..++..
T Consensus 207 Ll~~l~~~~~~~q~~il~~l~~---l~~~~~~~~~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~~~~~~~~~~~~~ 283 (591)
T 2vgl_B 207 LLTALNECTEWGQIFILDCLSN---YNPKDDREAQSICERVTPRLSHANSAVVLSAVKVLMKFLELLPKDSDYYNMLLKK 283 (591)
T ss_dssp HHHHHHHCCHHHHHHHHHHHHT---SCCCSHHHHHHHHHHHTTCSCSSTTHHHHHHHHHHHHSCCSCCBTTBSHHHHHHH
T ss_pred HHHCCCCCCCHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
T ss_conf 9874887882578999999998---6799859999999999998758984999999999999740247887999999999
Q ss_pred HHH---HHCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCC
Q ss_conf 998---22048835999999999999972961079999999999874210266567999863025489999999970983
Q 001839 318 FQD---YIRDPDRRFAADTVAAIGLCARKLPKMANTCVEGLLALIRQELLTSDIESGNGEADVLIQSIISIKSIIKQDPS 394 (1007)
Q Consensus 318 L~~---Yi~d~D~~fv~~aI~AIG~lA~k~p~~a~~cL~~Ll~LLs~~~~~s~~~~~~~~~~vV~EsVvvIk~Liq~~P~ 394 (1007)
+.. .+.+.|..++..++++++.++...|......+..++.+. +.+..+-.+++..+-.+. ++.
T Consensus 284 ~~~~L~~L~~~d~~vr~~aL~~l~~i~~~~p~~~~~~~~~~~~~~------------~d~~~Ir~~al~~L~~l~--~~~ 349 (591)
T 2vgl_B 284 LAPPLVTLLSGEPEVQYVALRNINLIVQKRPEILKQEIKVFFVKY------------NDPIYVKLEKLDIMIRLA--SQA 349 (591)
T ss_dssp THHHHHHHTTSCHHHHHHHHHHHHHHHHHCCSTTTTCTTTTSCCT------------TSCHHHHHHHHHHHHHTC--CSS
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHEECC------------CCHHHHHHHHHHHHHHHC--CHH
T ss_conf 999999996699208999999999999869698999887550036------------993999999999999877--862
Q ss_pred HHHHHH-HHHHCCC--CHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCH
Q ss_conf 078999-8521047--1235786542103445677775220899999998730168199999999999888650679885
Q 001839 395 CHEKLF-RSLDSIK--VPEARVMIIWMVGEYSSVGVKIPRMLTTVLKYLAWCFKSEAVETKLQILNTTIKVLLCAKGGDM 471 (1007)
Q Consensus 395 ~~~~L~-~~ld~I~--~p~ArAsIIWLIGEY~~~~e~ip~ia~dvLr~l~k~F~~E~~~VKlqILtl~aKL~l~~p~e~~ 471 (1007)
....+. ++.+.+. +++-|..++|-||..+.. .|.....++..+.+-+......++...+.....+.-..|....
T Consensus 350 nv~~iv~~L~~~l~~~d~~~r~~~v~aI~~la~~---~~~~~~~~v~~Ll~ll~~~~~~v~~e~i~~l~~ii~~~p~~~~ 426 (591)
T 2vgl_B 350 NIAQVLAELKEYATEVDVDFVRKAVRAIGRCAIK---VEQSAERCVSTLLDLIQTKVNYVVQEAIVVIRDIFRKYPNKYE 426 (591)
T ss_dssp THHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHSCSSCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH---CHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCHHH
T ss_conf 3999999999998657999999999999999985---7467999999999998355168999999999999997920578
Q ss_pred HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCC
Q ss_conf 899999999999870299956986899999970599
Q 001839 472 WTITRLFSYLLELAECDLNYDVRDRARFFKKLFSHN 507 (1007)
Q Consensus 472 ~~i~~L~qyvLeLa~~D~n~DVRDRAr~y~~LL~~~ 507 (1007)
..+..+++ .-..+.++++| +...|-|-..+
T Consensus 427 ~~v~~L~~----~l~~~~~~~~~--~~~~wilGey~ 456 (591)
T 2vgl_B 427 SIIATLCE----NLDSLDEPDAR--AAMIWIVGEYA 456 (591)
T ss_dssp TTHHHHHH----TTTTCCSHHHH--HHHHHHHHTTC
T ss_pred HHHHHHHH----HHHHCCCHHHH--HHHHHHHHCCC
T ss_conf 99999998----88742378999--99999997031
No 10
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=1.00 E-value=1 Score=90.66 Aligned_cols=447 Identities=12% Similarity=0.100 Sum_probs=199.5
Q ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHC---CCC-----
Q ss_conf 687999998622899902779999999998600701317669999998813999007999999999859---897-----
Q 001839 10 SPLVLVAVGKCARDPSVFVRKCAANALPKLHELRQEEITSAIEEIVGILLNDRSPGVVGAAAAAFASIC---PNN----- 81 (1007)
Q Consensus 10 ~piv~~aIkk~~~D~SPYVRKtAA~AI~Kly~ldp~~~~~~L~eil~~LL~D~sp~VvgsAv~Af~EIc---P~r----- 81 (1007)
.+.++..+.+++.|.++.||+.|+.++..+....++.+.+.+.+.+...|.|.++.|-.+|..++.+++ +..
T Consensus 46 ~~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~~~~~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~ 125 (1230)
T 1u6g_C 46 ERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEYQVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSA 125 (1230)
T ss_dssp HHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CC
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 99999999998669998999999999999997587989999999999986698388999999999999996797444441
Q ss_pred -C-CCHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHHHHCCCCCCHHH-HHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf -2-2128999999985899-9933599999999972210036642011-1111000257874210000000113899997
Q 001839 82 -F-TLIGRNYRNLCQILPD-VEEWGQILLIEILLRYVVASHGLVKESI-MSSLLCIESSHSEKDVFDVNVALEDNGIPSR 157 (1007)
Q Consensus 82 -~-dLihk~yrkLc~lL~d-~dEWgQv~iL~lL~rY~r~~~~~~~p~~-mf~~~~~~~~~~e~~~~~~~~~le~~~~~~~ 157 (1007)
. ......+..|+..+.+ -++-.+...+.+|...+......+.|.. ....... ..+.+.. .
T Consensus 126 ~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~~~~l~~~~~~ll~~l~-------------~~L~~~~-~-- 189 (1230)
T 1u6g_C 126 LAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPSILTCLL-------------PQLTSPR-L-- 189 (1230)
T ss_dssp THHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTTTHHHHHHHHG-------------GGGGCSS-H--
T ss_pred HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHCCCC-H--
T ss_conf 17889999999999987578846799999999999999827677887999999999-------------9875996-8--
Q ss_pred CCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCC--CCCCHHHHHHHHHHHHHC
Q ss_conf 664012321000000254321135777555566665764468988746999999510001--489959999999999934
Q 001839 158 TYDSELVNLVSRSYIEGLGEYLTRSSDTNARSSDLNGARFTSGKTNDDVKLLLQCTSPLL--WSHNSAVVLAAAGVHWIM 235 (1007)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~de~l~~~~~~~~~~~~~~~~~~~~~~~d~D~~lLL~~~~pLL--qS~NsAVVlaaa~l~~~l 235 (1007)
.-.......+ ..+..... ...++.-...|++.+...- ..+..+ +.+...+...
T Consensus 190 ~vR~~a~~al-~~l~~~~~----------------------~~~~~~~l~~l~~~L~~~~~~~~r~~a--~~~l~~l~~~ 244 (1230)
T 1u6g_C 190 AVRKRTIIAL-GHLVMSCG----------------------NIVFVDLIEHLLSELSKNDSMSTTRTY--IQCIAAISRQ 244 (1230)
T ss_dssp HHHHHHHHHH-HHHTTTC--------------------------CTTHHHHHHHHHHHTCSSCSCTTH--HHHHHHHHHH
T ss_pred HHHHHHHHHH-HHHHHHCC----------------------HHHHHHHHHHHHHHHCCCCCHHHHHHH--HHHHHHHHHH
T ss_conf 9999999999-99998568----------------------999999999999986167755689999--9999999998
Q ss_pred CCH---HHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHHHCCCCCCCCCCEEE------ECC-----------------
Q ss_conf 998---8899989999986137-8874135999999999879974102225236------516-----------------
Q 001839 236 SPK---EDVKRIVKPLLFILRS-SGASKYVVLCNIQVFAKALPHLFVPHYEDFF------VSS----------------- 288 (1007)
Q Consensus 236 ap~---~~i~~iv~pLi~LL~S-~~eiqYvvL~~I~~L~~~~p~lF~p~l~~Ff------v~~----------------- 288 (1007)
.+. .++..+...++..+.. .+++|..++..+..++...+..|.||+..+. ..+
T Consensus 245 ~~~~~~~~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~l~~li~~ll~~l~~d~~~~~~~d~~~~~~~~ 324 (1230)
T 1u6g_C 245 AGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHVSTIINICLKYLTYDPNYNYDDEDEDENAMD 324 (1230)
T ss_dssp SSGGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHTTCCCCC----------------
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
T ss_conf 68989988999999999986689778999999999999997848777768999999999827899888764411011223
Q ss_pred ------------------CCC-HHHHHHHHHHHHHCCCCCC--HH----HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
Q ss_conf ------------------898-8899999999984149888--99----9999999822048835999999999999972
Q 001839 289 ------------------SDS-YQSKALKLEILSSIVTESS--IS----SVFKEFQDYIRDPDRRFAADTVAAIGLCARK 343 (1007)
Q Consensus 289 ------------------~Dp-~~IK~lKLeIL~~Lane~N--v~----~IL~EL~~Yi~d~D~~fv~~aI~AIG~lA~k 343 (1007)
+|. ..+|...++.|..++.... +. .++..|..+..+.+..+...++.+++.+...
T Consensus 325 ~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~ 404 (1230)
T 1u6g_C 325 ADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKTVSPALISRFKEREENVKADVFHAYLSLLKQ 404 (1230)
T ss_dssp --------------------CTTHHHHHHHHHHHHHHTTCCTTHHHHHTTTHHHHHSTTSCSSSHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 34465301100136664555677999999999999997466679999999989999871798657999999999999997
Q ss_pred CCC-------------------CHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCH---H-HHHH
Q ss_conf 961-------------------0799999999998742102665679998630254899999999709830---7-8999
Q 001839 344 LPK-------------------MANTCVEGLLALIRQELLTSDIESGNGEADVLIQSIISIKSIIKQDPSC---H-EKLF 400 (1007)
Q Consensus 344 ~p~-------------------~a~~cL~~Ll~LLs~~~~~s~~~~~~~~~~vV~EsVvvIk~Liq~~P~~---~-~~L~ 400 (1007)
... .....+..++..+.... . +.+..+...++..+..++...+.. | ..++
T Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~l-~------~~~~~vr~~~~~~L~~l~~~~~~~l~~~l~~ll 477 (1230)
T 1u6g_C 405 TRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQM-K------EKSVKTRQCCFNMLTELVNVLPGALTQHIPVLV 477 (1230)
T ss_dssp HCCC------------CCCHHHHHHHHTTHHHHHHHHHT-T------CSCHHHHHHHHHHHHHHHHHSTTTTGGGHHHHH
T ss_pred HCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH-C------CCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_conf 242434346752013564559999987469999999986-1------377879999999999999976110577799999
Q ss_pred -HHHHCCCCHHH-HHHHHHHCCCCCCCC-----C-CCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH-CC----
Q ss_conf -85210471235-786542103445677-----7-75220899999998730168199999999999888650-67----
Q 001839 401 -RSLDSIKVPEA-RVMIIWMVGEYSSVG-----V-KIPRMLTTVLKYLAWCFKSEAVETKLQILNTTIKVLLC-AK---- 467 (1007)
Q Consensus 401 -~~ld~I~~p~A-rAsIIWLIGEY~~~~-----e-~ip~ia~dvLr~l~k~F~~E~~~VKlqILtl~aKL~l~-~p---- 467 (1007)
.+++.+.++.. +....|.++.++... + ..|+ .+.++..+...+.+....|+...+.+...+.-. .+
T Consensus 478 ~~l~~~L~d~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~-l~~llp~L~~~l~d~~~~v~~~al~~l~~l~~~~~~~~~~ 556 (1230)
T 1u6g_C 478 PGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQVFHPH-VQALVPPVVACVGDPFYKITSEALLVTQQLVKVIRPLDQP 556 (1230)
T ss_dssp HHHHHHTTCSSSCHHHHHHHHHHHHHHHHSSCGGGGHHH-HTTTHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCCSSSC
T ss_pred HHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHH-HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 999999748788516899999999999983898878867-9999999999971424689999999999999871675556
Q ss_pred --CCCHHHHHHHHHHHHHHH-CCCCCHHHHHHHHHHHHHCC
Q ss_conf --988589999999999987-02999569868999999705
Q 001839 468 --GGDMWTITRLFSYLLELA-ECDLNYDVRDRARFFKKLFS 505 (1007)
Q Consensus 468 --~e~~~~i~~L~qyvLeLa-~~D~n~DVRDRAr~y~~LL~ 505 (1007)
....+.+..++..++... ..|.++++|..|..-...+.
T Consensus 557 ~~~~~~~~~~~ll~~ll~~l~~~d~~~~vr~~a~~~lg~L~ 597 (1230)
T 1u6g_C 557 SSFDATPYIKDLFTCTIKRLKAADIDQEVKERAISCMGQII 597 (1230)
T ss_dssp CCCCCHHHHHHHHHHHHHHHSCSSSCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
T ss_conf 53232789999999999987326998899999999999999
Done!