Query 001840
Match_columns 1007
No_of_seqs 360 out of 2390
Neff 7.8
Searched_HMMs 46136
Date Fri Mar 29 10:34:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001840.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001840hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1002 Nucleotide excision re 100.0 3E-104 6E-109 856.2 36.5 575 263-1006 174-790 (791)
2 KOG4439 RNA polymerase II tran 100.0 1E-88 2.2E-93 763.6 40.7 545 264-1007 316-901 (901)
3 KOG0385 Chromatin remodeling c 100.0 2.1E-88 4.5E-93 767.7 38.8 460 265-987 158-623 (971)
4 KOG0387 Transcription-coupled 100.0 1.6E-86 3.4E-91 757.1 38.4 477 263-1007 195-699 (923)
5 KOG0392 SNF2 family DNA-depend 100.0 2.2E-85 4.7E-90 770.2 37.3 526 249-1006 949-1495(1549)
6 KOG0389 SNF2 family DNA-depend 100.0 3E-84 6.5E-89 737.1 33.4 487 272-987 397-912 (941)
7 PLN03142 Probable chromatin-re 100.0 4.8E-82 1E-86 777.6 46.0 474 266-1006 162-641 (1033)
8 KOG1001 Helicase-like transcri 100.0 4.2E-83 9.2E-88 759.5 33.3 567 246-986 106-673 (674)
9 KOG0391 SNF2 family DNA-depend 100.0 2.2E-82 4.7E-87 734.4 31.4 582 263-1007 605-1429(1958)
10 KOG0384 Chromodomain-helicase 100.0 6.3E-78 1.4E-82 711.9 34.1 480 266-1005 362-856 (1373)
11 KOG0388 SNF2 family DNA-depend 100.0 2.5E-75 5.4E-80 651.4 28.9 544 269-986 562-1177(1185)
12 KOG0390 DNA repair protein, SN 100.0 1.4E-70 3.1E-75 646.3 39.4 492 269-1006 233-748 (776)
13 KOG0386 Chromatin remodeling c 100.0 1.3E-71 2.9E-76 647.1 19.9 462 264-986 384-861 (1157)
14 KOG1015 Transcription regulato 100.0 2.5E-67 5.4E-72 601.0 31.8 577 271-1006 665-1317(1567)
15 COG0553 HepA Superfamily II DN 100.0 1.4E-62 3E-67 627.3 36.4 498 270-1007 334-865 (866)
16 KOG1016 Predicted DNA helicase 100.0 9.1E-57 2E-61 505.3 24.0 571 272-1006 252-889 (1387)
17 KOG1000 Chromatin remodeling p 100.0 1.4E-55 3.1E-60 479.4 30.1 423 267-984 192-624 (689)
18 PRK04914 ATP-dependent helicas 100.0 8E-55 1.7E-59 535.7 34.8 420 272-986 150-628 (956)
19 KOG0298 DEAD box-containing he 100.0 1E-49 2.2E-54 474.8 17.2 372 264-680 236-688 (1394)
20 PF00176 SNF2_N: SNF2 family N 100.0 5.8E-44 1.2E-48 398.7 18.3 291 278-683 1-299 (299)
21 KOG0383 Predicted helicase [Ge 100.0 5.2E-40 1.1E-44 385.1 7.6 398 273-917 294-696 (696)
22 TIGR00603 rad25 DNA repair hel 100.0 1.9E-36 4.1E-41 361.6 38.2 353 272-969 253-613 (732)
23 PRK13766 Hef nuclease; Provisi 100.0 4.8E-32 1E-36 340.6 37.9 144 805-980 345-496 (773)
24 COG1111 MPH1 ERCC4-like helica 99.9 5.8E-25 1.3E-29 244.4 37.4 463 272-982 13-500 (542)
25 PHA02558 uvsW UvsW helicase; P 99.9 2.9E-25 6.3E-30 264.4 34.1 111 854-965 346-457 (501)
26 COG1061 SSL2 DNA or RNA helica 99.9 1.3E-24 2.9E-29 253.8 32.6 367 272-974 34-405 (442)
27 KOG1123 RNA polymerase II tran 99.9 1.5E-22 3.2E-27 222.0 20.1 358 259-968 290-658 (776)
28 PTZ00110 helicase; Provisional 99.9 1E-20 2.2E-25 227.1 30.4 106 854-963 379-484 (545)
29 KOG0354 DEAD-box like helicase 99.9 1.9E-19 4.2E-24 211.8 33.7 147 804-984 392-549 (746)
30 PRK11776 ATP-dependent RNA hel 99.9 7.8E-20 1.7E-24 216.7 29.6 106 854-963 244-349 (460)
31 PRK11192 ATP-dependent RNA hel 99.9 1.1E-19 2.4E-24 213.9 28.1 101 854-956 247-347 (434)
32 TIGR00614 recQ_fam ATP-depende 99.8 8.7E-20 1.9E-24 216.3 25.6 102 854-957 228-329 (470)
33 PLN00206 DEAD-box ATP-dependen 99.8 2.3E-19 5E-24 214.8 29.3 106 854-963 369-475 (518)
34 PRK10590 ATP-dependent RNA hel 99.8 2E-19 4.3E-24 212.5 27.7 106 854-963 247-352 (456)
35 PRK01297 ATP-dependent RNA hel 99.8 4.9E-19 1.1E-23 210.6 29.6 106 854-963 337-442 (475)
36 PRK04837 ATP-dependent RNA hel 99.8 3.6E-19 7.8E-24 208.8 27.3 105 854-962 257-361 (423)
37 PRK11634 ATP-dependent RNA hel 99.8 9.6E-19 2.1E-23 212.1 29.7 98 854-953 247-344 (629)
38 PRK04537 ATP-dependent RNA hel 99.8 7.3E-19 1.6E-23 211.9 27.7 105 854-962 259-363 (572)
39 PTZ00424 helicase 45; Provisio 99.8 1.7E-18 3.7E-23 201.9 26.8 106 854-963 269-374 (401)
40 PRK11057 ATP-dependent DNA hel 99.8 1E-18 2.2E-23 212.7 25.1 98 854-953 238-335 (607)
41 TIGR00643 recG ATP-dependent D 99.8 1.5E-18 3.2E-23 212.2 26.4 79 875-955 481-560 (630)
42 TIGR01389 recQ ATP-dependent D 99.8 1.1E-18 2.4E-23 212.9 25.2 100 854-955 226-325 (591)
43 PRK11448 hsdR type I restricti 99.8 5.8E-18 1.3E-22 214.7 28.7 105 853-960 699-815 (1123)
44 TIGR00580 mfd transcription-re 99.8 1.2E-17 2.6E-22 208.4 25.5 105 854-962 662-769 (926)
45 PRK10917 ATP-dependent DNA hel 99.8 3.4E-17 7.4E-22 201.5 28.3 86 867-954 494-582 (681)
46 KOG0331 ATP-dependent RNA heli 99.8 2.6E-17 5.6E-22 188.8 23.4 117 806-952 323-439 (519)
47 PRK10689 transcription-repair 99.8 5.2E-17 1.1E-21 206.9 28.4 99 854-954 811-912 (1147)
48 PLN03137 ATP-dependent DNA hel 99.8 4.1E-17 8.9E-22 200.5 24.0 102 854-957 682-783 (1195)
49 TIGR03817 DECH_helic helicase/ 99.7 1.2E-15 2.6E-20 188.7 29.2 113 854-970 273-393 (742)
50 PRK02362 ski2-like helicase; P 99.7 1.6E-15 3.4E-20 189.4 26.2 82 878-961 305-395 (737)
51 PRK13767 ATP-dependent helicas 99.7 3.7E-15 8.1E-20 188.0 28.0 102 854-957 286-394 (876)
52 COG0513 SrmB Superfamily II DN 99.7 9.7E-15 2.1E-19 174.1 28.9 105 854-962 275-379 (513)
53 PRK01172 ski2-like helicase; P 99.7 1.2E-14 2.6E-19 180.2 26.5 72 879-953 288-368 (674)
54 TIGR01587 cas3_core CRISPR-ass 99.6 2.3E-14 5.1E-19 164.6 24.7 105 854-963 224-338 (358)
55 TIGR00348 hsdR type I site-spe 99.6 3.6E-14 7.7E-19 174.2 26.3 106 854-961 516-649 (667)
56 KOG0328 Predicted ATP-dependen 99.6 1.9E-14 4E-19 149.1 18.7 108 854-965 268-375 (400)
57 PRK00254 ski2-like helicase; P 99.6 5.1E-14 1.1E-18 175.5 26.5 84 878-963 297-388 (720)
58 KOG0330 ATP-dependent RNA heli 99.6 2.6E-14 5.7E-19 154.3 20.0 120 854-977 302-423 (476)
59 TIGR03714 secA2 accessory Sec 99.6 2.4E-14 5.2E-19 172.6 21.8 115 805-953 406-529 (762)
60 cd00079 HELICc Helicase superf 99.6 3E-15 6.4E-20 145.4 11.2 121 806-957 11-131 (131)
61 TIGR02621 cas3_GSU0051 CRISPR- 99.6 2.1E-13 4.6E-18 166.0 28.6 101 854-959 274-390 (844)
62 PRK12898 secA preprotein trans 99.6 4.2E-13 9.1E-18 160.2 28.5 114 805-951 455-576 (656)
63 COG1200 RecG RecG-like helicas 99.6 2.9E-13 6.4E-18 157.9 25.4 74 876-951 507-581 (677)
64 PRK09200 preprotein translocas 99.6 4E-13 8.7E-18 163.6 27.6 116 805-953 410-533 (790)
65 COG4096 HsdR Type I site-speci 99.6 5.4E-14 1.2E-18 165.7 16.9 106 853-960 427-545 (875)
66 KOG0335 ATP-dependent RNA heli 99.5 6.6E-13 1.4E-17 150.3 24.2 102 853-956 338-439 (482)
67 TIGR00963 secA preprotein tran 99.5 1.5E-13 3.3E-18 164.7 18.2 115 806-953 388-509 (745)
68 KOG0333 U5 snRNP-like RNA heli 99.5 9.9E-13 2.1E-17 146.8 21.7 124 805-963 501-624 (673)
69 KOG0350 DEAD-box ATP-dependent 99.5 4.3E-13 9.4E-18 149.0 18.6 105 854-962 431-539 (620)
70 PRK09401 reverse gyrase; Revie 99.5 1.6E-12 3.5E-17 166.5 24.6 89 854-948 330-431 (1176)
71 PF04851 ResIII: Type III rest 99.5 1.8E-13 3.8E-18 141.1 11.6 167 273-550 2-183 (184)
72 KOG4284 DEAD box protein [Tran 99.5 5.9E-13 1.3E-17 151.1 15.7 106 854-962 274-379 (980)
73 PRK05580 primosome assembly pr 99.5 2.6E-12 5.7E-17 158.0 22.8 96 864-961 438-549 (679)
74 TIGR03158 cas3_cyano CRISPR-as 99.5 5.7E-12 1.2E-16 144.2 24.1 82 854-946 274-357 (357)
75 PF00271 Helicase_C: Helicase 99.5 5.8E-14 1.3E-18 124.0 5.8 78 870-949 1-78 (78)
76 PHA02653 RNA helicase NPH-II; 99.5 3.4E-11 7.4E-16 146.1 31.5 108 854-967 397-518 (675)
77 smart00487 DEXDc DEAD-like hel 99.4 8E-13 1.7E-17 137.0 12.6 163 273-554 7-175 (201)
78 KOG0348 ATP-dependent RNA heli 99.4 1.4E-11 2.9E-16 138.1 22.2 119 854-978 427-567 (708)
79 KOG0343 RNA Helicase [RNA proc 99.4 1E-11 2.3E-16 139.3 19.4 135 806-976 298-434 (758)
80 PRK09751 putative ATP-dependen 99.4 2.3E-11 5.1E-16 156.5 24.1 93 854-948 246-371 (1490)
81 cd00046 DEXDc DEAD-like helica 99.4 3.2E-12 7E-17 124.6 11.7 137 298-549 2-144 (144)
82 TIGR01054 rgy reverse gyrase. 99.4 2.7E-11 5.9E-16 155.6 22.7 74 854-932 328-408 (1171)
83 TIGR00595 priA primosomal prot 99.4 3.1E-11 6.6E-16 143.5 21.2 96 866-963 272-383 (505)
84 COG0514 RecQ Superfamily II DN 99.4 2.5E-11 5.3E-16 142.5 19.8 101 854-956 232-332 (590)
85 COG1205 Distinct helicase fami 99.3 7E-11 1.5E-15 147.3 24.5 114 854-971 308-430 (851)
86 smart00490 HELICc helicase sup 99.3 2E-12 4.4E-17 114.5 7.3 81 867-949 2-82 (82)
87 KOG0342 ATP-dependent RNA heli 99.3 5.5E-11 1.2E-15 132.7 19.9 96 854-951 332-427 (543)
88 COG1201 Lhr Lhr-like helicases 99.3 1.8E-10 4E-15 139.9 26.1 117 854-976 255-373 (814)
89 TIGR01970 DEAH_box_HrpB ATP-de 99.3 1.4E-10 2.9E-15 144.2 25.0 105 854-963 211-336 (819)
90 KOG0336 ATP-dependent RNA heli 99.3 6.2E-11 1.3E-15 128.6 18.6 108 853-963 466-573 (629)
91 PRK12906 secA preprotein trans 99.3 1.2E-10 2.5E-15 141.4 22.8 117 805-954 422-546 (796)
92 COG1204 Superfamily II helicas 99.3 1.1E-10 2.4E-15 143.5 21.7 104 274-445 31-135 (766)
93 PRK14701 reverse gyrase; Provi 99.3 2.7E-10 5.8E-15 149.5 25.5 92 854-951 332-446 (1638)
94 KOG0326 ATP-dependent RNA heli 99.3 2.3E-11 5E-16 128.3 12.6 96 854-951 324-419 (459)
95 PRK13104 secA preprotein trans 99.3 3.9E-10 8.5E-15 137.5 24.7 130 805-972 426-593 (896)
96 KOG0339 ATP-dependent RNA heli 99.3 2.9E-10 6.2E-15 126.6 21.1 128 805-966 451-578 (731)
97 COG1197 Mfd Transcription-repa 99.3 1.1E-09 2.5E-14 135.0 28.0 117 854-974 805-929 (1139)
98 PRK11664 ATP-dependent RNA hel 99.3 3.7E-10 8E-15 140.7 24.1 107 854-965 214-341 (812)
99 KOG0338 ATP-dependent RNA heli 99.2 1.4E-10 3.1E-15 129.2 16.9 105 854-963 428-533 (691)
100 KOG0345 ATP-dependent RNA heli 99.2 1E-09 2.2E-14 121.9 21.5 118 806-956 240-359 (567)
101 PRK09694 helicase Cas3; Provis 99.2 1.8E-09 3.8E-14 134.5 25.7 95 854-951 562-665 (878)
102 KOG0340 ATP-dependent RNA heli 99.2 2.6E-09 5.6E-14 115.0 22.7 97 854-952 256-352 (442)
103 COG1202 Superfamily II helicas 99.2 9.9E-10 2.1E-14 124.2 20.2 106 854-962 442-552 (830)
104 COG4889 Predicted helicase [Ge 99.2 4.9E-10 1.1E-14 131.2 17.1 77 876-953 499-577 (1518)
105 PRK12904 preprotein translocas 99.2 2.9E-09 6.4E-14 129.9 24.5 129 805-971 412-578 (830)
106 PRK13107 preprotein translocas 99.1 6.6E-09 1.4E-13 126.6 25.3 130 805-972 431-597 (908)
107 KOG0344 ATP-dependent RNA heli 99.1 2.3E-09 4.9E-14 122.7 18.1 119 806-957 372-492 (593)
108 KOG0347 RNA helicase [RNA proc 99.1 8.5E-10 1.8E-14 124.3 13.4 95 854-950 465-559 (731)
109 TIGR00631 uvrb excinuclease AB 99.1 3.1E-08 6.8E-13 120.9 27.5 132 806-971 425-563 (655)
110 cd00268 DEADc DEAD-box helicas 99.0 1.7E-09 3.7E-14 113.8 12.8 159 274-550 21-185 (203)
111 PRK05298 excinuclease ABC subu 99.0 1.6E-07 3.4E-12 115.6 30.1 122 806-961 429-555 (652)
112 KOG0334 RNA helicase [RNA proc 98.9 1.4E-08 2.9E-13 123.5 17.3 124 805-962 596-719 (997)
113 TIGR01967 DEAH_box_HrpA ATP-de 98.9 3.9E-08 8.5E-13 125.6 21.5 106 854-966 281-407 (1283)
114 KOG0332 ATP-dependent RNA heli 98.9 8.3E-09 1.8E-13 111.7 13.1 105 854-962 332-442 (477)
115 PRK12900 secA preprotein trans 98.9 8.6E-07 1.9E-11 108.9 31.0 130 805-972 580-717 (1025)
116 KOG0952 DNA/RNA helicase MER3/ 98.9 1.5E-07 3.3E-12 113.7 23.6 83 882-966 402-494 (1230)
117 PRK12326 preprotein translocas 98.9 2.8E-07 6E-12 110.2 24.8 130 805-972 409-553 (764)
118 PRK11131 ATP-dependent RNA hel 98.9 9.5E-08 2.1E-12 121.8 20.9 105 854-965 288-413 (1294)
119 PF00270 DEAD: DEAD/DEAH box h 98.9 8.5E-09 1.8E-13 104.9 9.5 158 277-556 2-168 (169)
120 PF13872 AAA_34: P-loop contai 98.8 3.1E-08 6.8E-13 107.3 12.9 242 273-641 36-302 (303)
121 KOG0341 DEAD-box protein abstr 98.8 2.4E-08 5.3E-13 108.1 9.4 137 806-978 407-547 (610)
122 COG1203 CRISPR-associated heli 98.7 7.6E-07 1.7E-11 111.1 23.9 124 854-980 442-569 (733)
123 PF11496 HDA2-3: Class II hist 98.7 6.1E-07 1.3E-11 99.1 18.3 225 624-974 5-256 (297)
124 COG4098 comFA Superfamily II D 98.7 1.3E-05 2.7E-10 86.8 26.2 102 854-959 307-414 (441)
125 PRK12899 secA preprotein trans 98.6 6E-06 1.3E-10 101.4 25.1 130 805-972 550-687 (970)
126 KOG0351 ATP-dependent DNA heli 98.6 6E-07 1.3E-11 112.0 15.3 103 854-958 487-589 (941)
127 PRK13103 secA preprotein trans 98.5 5.4E-06 1.2E-10 101.7 22.0 119 805-956 431-586 (913)
128 KOG0337 ATP-dependent RNA heli 98.5 1.2E-06 2.6E-11 96.7 14.4 114 806-951 245-358 (529)
129 KOG0352 ATP-dependent DNA heli 98.5 1.8E-06 3.9E-11 95.2 15.6 102 854-957 257-358 (641)
130 KOG1513 Nuclear helicase MOP-3 98.5 8.7E-06 1.9E-10 95.6 20.9 83 896-980 851-941 (1300)
131 PRK12903 secA preprotein trans 98.4 2.4E-05 5.2E-10 95.3 23.6 129 805-971 408-544 (925)
132 COG0556 UvrB Helicase subunit 98.4 0.00015 3.2E-09 83.0 27.9 137 806-974 429-570 (663)
133 TIGR00596 rad1 DNA repair prot 98.4 1.1E-05 2.3E-10 100.3 20.6 60 924-986 478-538 (814)
134 KOG0327 Translation initiation 98.3 1.1E-06 2.5E-11 96.4 8.7 106 854-963 265-370 (397)
135 COG1198 PriA Primosomal protei 98.3 7.2E-05 1.6E-09 91.3 24.3 96 866-963 494-605 (730)
136 PF13871 Helicase_C_4: Helicas 98.2 1.9E-06 4.1E-11 93.4 7.1 93 893-987 52-152 (278)
137 KOG0951 RNA helicase BRR2, DEA 98.2 2.5E-05 5.3E-10 96.3 17.0 71 877-949 608-688 (1674)
138 KOG0353 ATP-dependent DNA heli 98.2 3.5E-05 7.6E-10 83.7 16.3 104 854-959 319-465 (695)
139 COG1110 Reverse gyrase [DNA re 98.1 6.8E-05 1.5E-09 91.5 17.4 73 854-932 337-416 (1187)
140 KOG0947 Cytoplasmic exosomal R 98.0 0.00056 1.2E-08 82.9 21.8 99 272-447 295-394 (1248)
141 KOG0823 Predicted E3 ubiquitin 98.0 3.2E-06 6.9E-11 87.0 2.4 57 716-772 45-101 (230)
142 PF07652 Flavi_DEAD: Flaviviru 97.9 3.2E-05 6.9E-10 75.2 8.5 52 385-445 34-85 (148)
143 CHL00122 secA preprotein trans 97.8 0.0014 3E-08 80.8 22.1 83 805-919 406-489 (870)
144 KOG0346 RNA helicase [RNA proc 97.8 5.2E-05 1.1E-09 84.5 8.7 107 854-963 270-410 (569)
145 KOG0349 Putative DEAD-box RNA 97.8 5.4E-05 1.2E-09 83.7 8.2 94 853-948 506-602 (725)
146 PRK12901 secA preprotein trans 97.8 0.0043 9.2E-08 77.4 24.5 118 805-955 610-735 (1112)
147 PF02399 Herpes_ori_bp: Origin 97.7 0.0059 1.3E-07 74.6 24.0 95 854-957 284-384 (824)
148 PLN03208 E3 ubiquitin-protein 97.7 2.1E-05 4.6E-10 79.8 2.8 55 717-771 17-84 (193)
149 COG4581 Superfamily II RNA hel 97.7 0.0053 1.1E-07 77.3 23.4 77 881-959 449-533 (1041)
150 PRK12902 secA preprotein trans 97.6 0.0068 1.5E-07 74.8 22.6 82 805-918 421-503 (939)
151 PRK15483 type III restriction- 97.5 0.00061 1.3E-08 85.2 13.2 37 514-551 204-240 (986)
152 KOG0953 Mitochondrial RNA heli 97.5 0.00035 7.6E-09 80.2 8.6 108 852-963 358-477 (700)
153 smart00504 Ubox Modified RING 97.5 4.5E-05 9.8E-10 64.2 1.2 50 719-771 2-51 (63)
154 KOG2164 Predicted E3 ubiquitin 97.4 6.8E-05 1.5E-09 85.4 2.8 54 718-771 186-241 (513)
155 PF13923 zf-C3HC4_2: Zinc fing 97.4 5.6E-05 1.2E-09 57.1 1.3 37 721-758 1-38 (39)
156 COG0610 Type I site-specific r 97.4 0.00044 9.6E-09 88.5 10.0 69 890-960 579-650 (962)
157 PF15227 zf-C3HC4_4: zinc fing 97.4 7.9E-05 1.7E-09 57.1 1.8 33 721-753 1-33 (42)
158 KOG0329 ATP-dependent RNA heli 97.4 0.0019 4.2E-08 67.3 12.2 44 908-951 302-345 (387)
159 KOG0949 Predicted helicase, DE 97.3 0.027 5.8E-07 69.1 22.4 69 882-952 968-1037(1330)
160 KOG0317 Predicted E3 ubiquitin 97.2 0.00016 3.4E-09 76.9 2.5 51 717-770 238-288 (293)
161 KOG0922 DEAH-box RNA helicase 97.2 0.035 7.5E-07 66.1 21.8 110 854-966 260-393 (674)
162 KOG0978 E3 ubiquitin ligase in 97.2 8.7E-05 1.9E-09 88.7 0.4 51 718-770 643-693 (698)
163 COG1643 HrpA HrpA-like helicas 97.2 0.03 6.5E-07 70.0 22.0 107 854-966 261-390 (845)
164 KOG0320 Predicted E3 ubiquitin 97.2 0.00013 2.8E-09 72.0 1.2 49 717-768 130-180 (187)
165 KOG0948 Nuclear exosomal RNA h 97.1 0.011 2.4E-07 70.3 16.5 68 898-968 468-543 (1041)
166 TIGR01407 dinG_rel DnaQ family 97.0 0.0035 7.6E-08 80.2 12.6 97 854-955 676-808 (850)
167 COG0653 SecA Preprotein transl 96.8 0.056 1.2E-06 66.7 19.4 112 805-949 411-533 (822)
168 KOG0950 DNA polymerase theta/e 96.8 0.028 6.1E-07 69.1 16.6 70 878-950 524-598 (1008)
169 TIGR00599 rad18 DNA repair pro 96.8 0.00043 9.4E-09 78.8 1.3 49 717-768 25-73 (397)
170 PF00097 zf-C3HC4: Zinc finger 96.8 0.00063 1.4E-08 51.9 1.6 37 721-757 1-39 (41)
171 smart00488 DEXDc2 DEAD-like he 96.7 0.009 2E-07 66.5 10.6 43 273-318 7-49 (289)
172 smart00489 DEXDc3 DEAD-like he 96.7 0.009 2E-07 66.5 10.6 43 273-318 7-49 (289)
173 PHA02929 N1R/p28-like protein; 96.7 0.001 2.2E-08 70.8 2.6 47 717-766 173-227 (238)
174 PF13920 zf-C3HC4_3: Zinc fing 96.7 0.00082 1.8E-08 53.7 1.5 46 718-766 2-48 (50)
175 PF13086 AAA_11: AAA domain; P 96.6 0.031 6.6E-07 59.5 14.0 41 274-320 1-41 (236)
176 TIGR03117 cas_csf4 CRISPR-asso 96.5 0.019 4.1E-07 70.0 12.4 79 854-936 473-564 (636)
177 PF13445 zf-RING_UBOX: RING-ty 96.5 0.00083 1.8E-08 51.6 0.3 30 721-751 1-34 (43)
178 PF04564 U-box: U-box domain; 96.3 0.0017 3.6E-08 56.5 1.5 51 718-770 4-54 (73)
179 smart00184 RING Ring finger. E 96.1 0.0032 6.9E-08 46.6 1.9 37 721-757 1-37 (39)
180 COG3587 Restriction endonuclea 96.1 0.016 3.6E-07 70.2 8.6 34 514-548 208-241 (985)
181 COG5432 RAD18 RING-finger-cont 96.0 0.0029 6.2E-08 66.7 1.4 44 717-763 24-67 (391)
182 PF14835 zf-RING_6: zf-RING of 96.0 0.0048 1E-07 50.9 2.4 47 718-769 7-54 (65)
183 cd00162 RING RING-finger (Real 95.9 0.0039 8.5E-08 47.8 1.7 42 720-763 1-43 (45)
184 COG5574 PEX10 RING-finger-cont 95.9 0.0037 7.9E-08 65.9 1.6 48 717-766 214-262 (271)
185 PF13639 zf-RING_2: Ring finge 95.8 0.0025 5.4E-08 49.4 0.2 37 720-757 2-41 (44)
186 PHA02926 zinc finger-like prot 95.8 0.0051 1.1E-07 63.3 2.2 48 717-766 169-230 (242)
187 PRK07246 bifunctional ATP-depe 95.7 0.059 1.3E-06 68.5 11.6 97 854-955 649-777 (820)
188 KOG0824 Predicted E3 ubiquitin 95.6 0.0069 1.5E-07 64.8 2.4 59 717-777 6-64 (324)
189 PF14634 zf-RING_5: zinc-RING 95.5 0.0087 1.9E-07 46.4 2.3 38 720-758 1-41 (44)
190 PRK10536 hypothetical protein; 95.5 0.021 4.5E-07 61.7 5.7 40 513-554 178-217 (262)
191 PF11789 zf-Nse: Zinc-finger o 95.5 0.0058 1.3E-07 50.2 1.0 45 717-761 10-56 (57)
192 TIGR00570 cdk7 CDK-activating 95.4 0.0085 1.8E-07 65.7 2.6 50 718-769 3-57 (309)
193 PF13307 Helicase_C_2: Helicas 95.2 0.074 1.6E-06 54.2 8.6 98 853-956 10-145 (167)
194 PF02562 PhoH: PhoH-like prote 95.2 0.036 7.8E-07 58.1 6.4 44 510-555 118-161 (205)
195 KOG1802 RNA helicase nonsense 95.2 0.08 1.7E-06 62.6 9.4 80 274-424 410-490 (935)
196 KOG1133 Helicase of the DEAD s 95.2 1 2.2E-05 54.2 18.4 80 854-934 631-721 (821)
197 COG0553 HepA Superfamily II DN 95.2 0.015 3.3E-07 75.0 4.1 80 855-951 445-524 (866)
198 KOG0287 Postreplication repair 95.0 0.0046 9.9E-08 66.7 -1.3 45 717-764 22-66 (442)
199 PRK08074 bifunctional ATP-depe 94.8 0.18 3.9E-06 65.3 12.3 100 854-955 754-887 (928)
200 PF07517 SecA_DEAD: SecA DEAD- 94.7 0.078 1.7E-06 57.9 7.5 102 272-446 75-180 (266)
201 KOG4172 Predicted E3 ubiquitin 94.6 0.011 2.4E-07 46.6 0.4 48 717-766 6-54 (62)
202 KOG1132 Helicase of the DEAD s 94.2 0.34 7.3E-06 59.6 11.7 82 854-936 563-659 (945)
203 PRK14873 primosome assembly pr 94.2 0.2 4.4E-06 61.9 10.2 57 385-444 189-252 (665)
204 TIGR01407 dinG_rel DnaQ family 94.1 0.27 5.8E-06 63.2 11.6 45 272-319 243-287 (850)
205 PRK08074 bifunctional ATP-depe 93.3 0.5 1.1E-05 61.2 12.0 43 272-317 255-297 (928)
206 KOG2879 Predicted E3 ubiquitin 93.1 0.057 1.2E-06 57.3 2.3 48 716-765 237-286 (298)
207 COG1199 DinG Rad3-related DNA 93.0 0.68 1.5E-05 57.9 12.3 99 854-956 481-612 (654)
208 smart00492 HELICc3 helicase su 92.7 0.64 1.4E-05 46.0 9.0 68 864-933 3-79 (141)
209 PRK11747 dinG ATP-dependent DN 92.5 0.79 1.7E-05 57.5 11.8 96 854-954 536-667 (697)
210 TIGR00604 rad3 DNA repair heli 92.4 0.75 1.6E-05 57.9 11.6 102 854-956 524-669 (705)
211 TIGR00376 DNA helicase, putati 92.2 0.91 2E-05 56.3 11.7 41 273-319 156-196 (637)
212 COG5540 RING-finger-containing 92.2 0.06 1.3E-06 57.7 1.2 48 717-766 322-372 (374)
213 PF13604 AAA_30: AAA domain; P 92.2 1.1 2.3E-05 47.0 10.6 39 274-317 1-39 (196)
214 KOG1785 Tyrosine kinase negati 92.1 0.073 1.6E-06 58.8 1.8 51 714-766 365-416 (563)
215 KOG0311 Predicted E3 ubiquitin 92.0 0.02 4.3E-07 62.7 -2.7 49 717-767 42-91 (381)
216 KOG1131 RNA polymerase II tran 91.9 1.2 2.6E-05 51.8 11.1 44 275-322 17-61 (755)
217 KOG4150 Predicted ATP-dependen 91.9 0.44 9.5E-06 55.5 7.7 117 804-951 506-630 (1034)
218 COG5152 Uncharacterized conser 91.9 0.055 1.2E-06 54.3 0.4 36 716-751 194-230 (259)
219 KOG1803 DNA helicase [Replicat 91.1 0.11 2.3E-06 61.4 1.8 44 271-320 182-225 (649)
220 PF09848 DUF2075: Uncharacteri 90.9 0.79 1.7E-05 52.6 8.7 21 300-320 5-25 (352)
221 TIGR02562 cas3_yersinia CRISPR 90.7 8 0.00017 49.6 17.4 58 893-953 824-884 (1110)
222 KOG2177 Predicted E3 ubiquitin 90.6 0.097 2.1E-06 58.5 0.9 43 717-762 12-54 (386)
223 smart00491 HELICc2 helicase su 90.4 1.1 2.4E-05 44.3 8.1 69 864-933 3-80 (142)
224 COG5222 Uncharacterized conser 90.4 0.12 2.6E-06 55.0 1.3 41 718-758 274-315 (427)
225 PRK07246 bifunctional ATP-depe 89.9 2.3 5.1E-05 54.3 12.4 43 272-317 243-285 (820)
226 KOG4159 Predicted E3 ubiquitin 89.8 0.15 3.3E-06 58.5 1.6 48 717-767 83-130 (398)
227 PHA02533 17 large terminase pr 89.5 3.5 7.6E-05 49.9 12.9 41 272-319 57-97 (534)
228 PF12678 zf-rbx1: RING-H2 zinc 89.4 0.22 4.8E-06 43.2 1.9 40 718-758 19-71 (73)
229 PRK10875 recD exonuclease V su 89.0 2.3 4.9E-05 52.4 10.9 43 510-554 264-306 (615)
230 TIGR01447 recD exodeoxyribonuc 89.0 2.2 4.8E-05 52.2 10.9 41 511-553 259-299 (586)
231 KOG0926 DEAH-box RNA helicase 88.7 0.69 1.5E-05 56.2 6.0 20 299-318 274-293 (1172)
232 KOG0826 Predicted E3 ubiquitin 88.7 0.2 4.2E-06 54.7 1.3 51 714-765 296-347 (357)
233 TIGR01448 recD_rel helicase, p 87.7 3.6 7.9E-05 51.8 11.8 40 512-553 417-456 (720)
234 KOG2660 Locus-specific chromos 87.0 0.16 3.4E-06 55.7 -0.6 47 718-767 15-62 (331)
235 PF06862 DUF1253: Protein of u 86.5 9.1 0.0002 44.9 13.2 109 854-963 302-415 (442)
236 KOG4692 Predicted E3 ubiquitin 85.8 0.37 8.1E-06 52.7 1.4 36 716-751 420-455 (489)
237 PF05876 Terminase_GpA: Phage 85.5 3.3 7.1E-05 50.6 9.6 56 507-562 130-192 (557)
238 COG5220 TFB3 Cdk activating ki 85.5 0.3 6.5E-06 50.7 0.5 51 718-768 10-66 (314)
239 KOG4628 Predicted E3 ubiquitin 85.0 0.45 9.8E-06 53.3 1.7 48 719-768 230-280 (348)
240 KOG1813 Predicted E3 ubiquitin 84.7 0.4 8.6E-06 51.7 1.0 46 717-765 240-285 (313)
241 PRK04296 thymidine kinase; Pro 83.3 2.8 6E-05 43.6 6.6 36 511-548 78-114 (190)
242 KOG0346 RNA helicase [RNA proc 82.1 1.9 4.2E-05 49.2 5.0 58 387-446 96-159 (569)
243 PF06733 DEAD_2: DEAD_2; Inte 81.6 0.59 1.3E-05 47.9 0.8 16 430-445 117-132 (174)
244 KOG0802 E3 ubiquitin ligase [P 80.9 0.59 1.3E-05 56.9 0.6 46 716-764 289-339 (543)
245 KOG3039 Uncharacterized conser 79.3 0.93 2E-05 47.5 1.4 32 719-750 44-75 (303)
246 TIGR02881 spore_V_K stage V sp 78.7 3.6 7.8E-05 45.1 5.9 21 299-319 45-65 (261)
247 COG1875 NYN ribonuclease and A 78.6 3.2 7E-05 46.7 5.3 41 275-320 229-269 (436)
248 KOG0827 Predicted E3 ubiquitin 78.6 1.1 2.3E-05 50.1 1.6 52 718-771 4-61 (465)
249 PRK07003 DNA polymerase III su 78.2 11 0.00023 47.1 10.1 52 511-564 119-173 (830)
250 KOG0920 ATP-dependent RNA heli 77.2 6.2 0.00013 50.1 7.8 105 853-963 414-544 (924)
251 KOG1814 Predicted E3 ubiquitin 77.1 1.1 2.3E-05 50.6 1.1 55 714-768 180-244 (445)
252 TIGR03117 cas_csf4 CRISPR-asso 76.9 18 0.00039 44.7 11.6 40 385-424 47-89 (636)
253 PF12861 zf-Apc11: Anaphase-pr 75.6 2.3 5E-05 37.8 2.5 43 721-765 35-81 (85)
254 KOG0297 TNF receptor-associate 75.4 1.6 3.5E-05 50.7 2.0 41 717-758 20-61 (391)
255 KOG3039 Uncharacterized conser 75.2 1.8 3.9E-05 45.4 2.1 52 717-771 220-275 (303)
256 KOG4265 Predicted E3 ubiquitin 74.9 1.3 2.8E-05 49.4 1.0 49 717-768 289-338 (349)
257 PLN03025 replication factor C 74.1 37 0.0008 38.3 12.6 56 511-566 99-155 (319)
258 PRK09112 DNA polymerase III su 73.6 21 0.00045 41.0 10.4 42 279-320 28-69 (351)
259 KOG1734 Predicted RING-contain 73.3 1.5 3.3E-05 46.6 1.0 54 717-772 223-287 (328)
260 TIGR03420 DnaA_homol_Hda DnaA 73.2 28 0.00061 36.8 10.9 23 297-319 39-61 (226)
261 KOG4739 Uncharacterized protei 73.0 1.7 3.7E-05 46.0 1.3 42 721-767 6-49 (233)
262 PF13401 AAA_22: AAA domain; P 72.6 2.7 5.7E-05 40.3 2.5 35 513-549 89-125 (131)
263 KOG3800 Predicted E3 ubiquitin 71.1 2.2 4.8E-05 46.2 1.6 47 720-768 2-53 (300)
264 PF12340 DUF3638: Protein of u 70.7 12 0.00025 40.1 6.9 75 272-409 21-95 (229)
265 PRK11747 dinG ATP-dependent DN 69.3 3.1 6.8E-05 52.3 2.7 44 273-316 24-69 (697)
266 KOG1805 DNA replication helica 68.3 23 0.00049 44.9 9.5 42 274-321 669-710 (1100)
267 COG5243 HRD1 HRD ubiquitin lig 67.8 2.9 6.3E-05 46.4 1.7 51 712-765 281-344 (491)
268 KOG1039 Predicted E3 ubiquitin 67.5 2.7 5.8E-05 47.5 1.5 47 716-764 159-219 (344)
269 TIGR02880 cbbX_cfxQ probable R 66.9 7.2 0.00016 43.4 4.7 23 298-320 60-82 (284)
270 KOG0327 Translation initiation 66.2 13 0.00027 42.3 6.3 43 507-549 165-210 (397)
271 TIGR00595 priA primosomal prot 65.2 36 0.00077 41.2 10.5 95 803-929 5-100 (505)
272 KOG0828 Predicted E3 ubiquitin 64.8 2.6 5.7E-05 48.4 0.7 44 718-761 571-631 (636)
273 CHL00181 cbbX CbbX; Provisiona 64.7 15 0.00032 41.0 6.6 21 299-319 62-82 (287)
274 PRK12402 replication factor C 64.3 9.6 0.00021 43.2 5.2 22 298-319 38-59 (337)
275 PRK05707 DNA polymerase III su 64.2 29 0.00063 39.4 9.0 46 274-322 3-48 (328)
276 PRK14960 DNA polymerase III su 63.4 52 0.0011 40.8 11.2 41 277-320 21-61 (702)
277 PRK10917 ATP-dependent DNA hel 62.7 35 0.00075 43.0 10.1 74 854-928 312-389 (681)
278 PHA02544 44 clamp loader, smal 62.3 56 0.0012 36.6 11.0 39 512-550 101-141 (316)
279 TIGR00365 monothiol glutaredox 61.9 37 0.0008 31.1 7.6 56 854-909 13-74 (97)
280 PF14570 zf-RING_4: RING/Ubox 61.7 5.9 0.00013 31.3 1.9 42 721-764 1-46 (48)
281 cd00009 AAA The AAA+ (ATPases 61.6 50 0.0011 31.2 9.2 41 512-552 85-132 (151)
282 KOG1571 Predicted E3 ubiquitin 61.4 4.1 9E-05 45.5 1.5 44 717-766 304-347 (355)
283 KOG1812 Predicted E3 ubiquitin 60.7 3.6 7.8E-05 47.7 0.9 53 718-770 146-207 (384)
284 PRK05580 primosome assembly pr 60.3 50 0.0011 41.6 10.9 96 803-930 170-266 (679)
285 PRK04195 replication factor C 59.7 62 0.0014 38.9 11.2 22 297-318 40-61 (482)
286 PRK14087 dnaA chromosomal repl 59.5 35 0.00076 40.6 8.9 21 298-318 143-163 (450)
287 PRK14958 DNA polymerase III su 59.2 90 0.0019 37.8 12.4 56 511-568 119-177 (509)
288 TIGR00604 rad3 DNA repair heli 58.8 22 0.00049 44.9 7.5 43 274-319 10-52 (705)
289 KOG0952 DNA/RNA helicase MER3/ 58.7 19 0.0004 46.0 6.4 61 382-444 971-1032(1230)
290 KOG1645 RING-finger-containing 58.7 2.4 5.2E-05 47.8 -0.9 60 718-778 4-68 (463)
291 PF04641 Rtf2: Rtf2 RING-finge 57.6 7.6 0.00016 42.6 2.7 51 717-771 112-166 (260)
292 KOG0923 mRNA splicing factor A 57.4 28 0.0006 42.3 7.2 100 854-961 475-604 (902)
293 TIGR00362 DnaA chromosomal rep 57.1 57 0.0012 38.2 10.2 21 299-319 139-159 (405)
294 PRK00149 dnaA chromosomal repl 57.1 50 0.0011 39.3 9.8 21 299-319 151-171 (450)
295 PRK07764 DNA polymerase III su 56.8 61 0.0013 41.6 10.8 43 276-321 20-62 (824)
296 PF13245 AAA_19: Part of AAA d 56.6 22 0.00048 31.0 4.9 22 300-321 14-35 (76)
297 PRK14956 DNA polymerase III su 56.4 29 0.00063 41.3 7.4 22 299-320 43-64 (484)
298 PRK12723 flagellar biosynthesi 56.1 42 0.00091 39.0 8.5 55 512-566 255-314 (388)
299 TIGR00643 recG ATP-dependent D 56.0 46 0.001 41.5 9.5 73 854-927 286-362 (630)
300 COG3421 Uncharacterized protei 55.8 11 0.00025 44.9 3.8 17 304-320 5-21 (812)
301 KOG0951 RNA helicase BRR2, DEA 55.2 54 0.0012 42.9 9.6 56 384-444 1186-1246(1674)
302 PRK08084 DNA replication initi 55.0 84 0.0018 33.8 10.2 20 299-318 48-67 (235)
303 KOG0920 ATP-dependent RNA heli 54.8 98 0.0021 39.8 11.9 42 273-321 172-213 (924)
304 PF13607 Succ_CoA_lig: Succiny 54.4 44 0.00095 32.9 7.2 86 854-960 3-90 (138)
305 PRK06526 transposase; Provisio 54.1 45 0.00098 36.4 8.0 23 297-319 99-121 (254)
306 COG0464 SpoVK ATPases of the A 53.8 20 0.00043 43.3 5.7 45 275-319 250-299 (494)
307 KOG0924 mRNA splicing factor A 53.7 45 0.00097 40.7 8.1 28 916-945 932-959 (1042)
308 PRK14952 DNA polymerase III su 53.0 49 0.0011 40.7 8.8 21 300-320 39-59 (584)
309 TIGR02768 TraA_Ti Ti-type conj 52.9 76 0.0016 40.4 10.8 42 272-319 350-391 (744)
310 PF14447 Prok-RING_4: Prokaryo 51.7 9.4 0.0002 31.0 1.6 45 719-768 8-52 (55)
311 PRK14949 DNA polymerase III su 51.1 92 0.002 40.0 10.8 21 300-320 42-62 (944)
312 PRK00440 rfc replication facto 50.4 1.7E+02 0.0038 32.5 12.4 21 299-319 41-61 (319)
313 PRK08116 hypothetical protein; 50.4 1.3E+02 0.0027 33.2 10.8 23 297-319 115-137 (268)
314 PRK14088 dnaA chromosomal repl 50.3 1.5E+02 0.0032 35.2 12.1 21 299-319 133-153 (440)
315 PRK10824 glutaredoxin-4; Provi 50.2 60 0.0013 30.9 7.1 61 854-915 16-83 (115)
316 KOG1815 Predicted E3 ubiquitin 50.1 11 0.00024 44.7 2.7 54 717-770 69-130 (444)
317 cd03028 GRX_PICOT_like Glutare 50.0 58 0.0013 29.2 6.8 44 854-897 9-58 (90)
318 PRK08691 DNA polymerase III su 50.0 2.4E+02 0.0052 35.4 13.9 53 511-565 119-174 (709)
319 PHA03368 DNA packaging termina 49.7 64 0.0014 39.8 8.8 40 507-548 348-389 (738)
320 KOG0804 Cytoplasmic Zn-finger 49.3 7.6 0.00017 44.5 1.0 38 717-757 174-215 (493)
321 KOG0924 mRNA splicing factor A 48.8 41 0.00088 41.1 6.8 114 854-970 565-704 (1042)
322 COG4626 Phage terminase-like p 48.3 79 0.0017 38.0 9.2 49 272-320 59-110 (546)
323 PRK14086 dnaA chromosomal repl 46.9 66 0.0014 39.6 8.5 21 299-319 317-337 (617)
324 PF13173 AAA_14: AAA domain 46.7 18 0.00039 34.7 3.1 36 513-549 63-98 (128)
325 PF13177 DNA_pol3_delta2: DNA 46.1 1.6E+02 0.0036 29.5 10.1 23 300-322 23-45 (162)
326 cd03418 GRX_GRXb_1_3_like Glut 46.1 76 0.0016 26.8 6.7 57 854-910 1-58 (75)
327 PRK07994 DNA polymerase III su 45.5 1.3E+02 0.0029 37.4 10.9 41 277-320 22-62 (647)
328 PRK13889 conjugal transfer rel 45.4 94 0.002 40.7 10.0 43 512-556 434-477 (988)
329 PF03354 Terminase_1: Phage Te 45.3 1.5E+02 0.0032 35.6 11.3 45 277-321 1-47 (477)
330 KOG0991 Replication factor C, 45.3 1E+02 0.0022 33.1 8.3 21 299-319 51-71 (333)
331 KOG0923 mRNA splicing factor A 45.1 42 0.00091 40.9 6.2 19 299-317 283-301 (902)
332 KOG4275 Predicted E3 ubiquitin 44.1 8.3 0.00018 41.7 0.3 43 718-767 300-343 (350)
333 COG4646 DNA methylase [Transcr 43.8 13 0.00029 42.8 1.9 31 539-569 473-503 (637)
334 PRK07940 DNA polymerase III su 43.7 1.2E+02 0.0026 35.4 9.8 24 298-321 38-61 (394)
335 COG1199 DinG Rad3-related DNA 42.7 61 0.0013 40.6 7.8 47 272-321 13-59 (654)
336 KOG3579 Predicted E3 ubiquitin 42.4 9.5 0.00021 41.0 0.4 40 719-758 269-316 (352)
337 PRK08727 hypothetical protein; 41.6 1.3E+02 0.0029 32.2 9.2 21 299-319 44-64 (233)
338 KOG1493 Anaphase-promoting com 41.5 12 0.00027 32.2 0.9 45 720-764 33-79 (84)
339 KOG4445 Uncharacterized conser 41.1 27 0.00057 38.2 3.5 34 717-750 117-150 (368)
340 KOG2932 E3 ubiquitin ligase in 40.5 13 0.00029 40.5 1.2 28 719-746 91-119 (389)
341 COG1198 PriA Primosomal protei 40.5 62 0.0013 40.7 7.0 84 800-913 222-306 (730)
342 TIGR00580 mfd transcription-re 40.2 1.2E+02 0.0027 39.4 10.0 74 854-928 502-579 (926)
343 PHA03096 p28-like protein; Pro 40.0 11 0.00024 41.6 0.5 34 719-752 179-220 (284)
344 PRK14873 primosome assembly pr 39.8 1.1E+02 0.0024 38.3 9.1 76 805-910 170-247 (665)
345 COG4098 comFA Superfamily II D 39.7 50 0.0011 37.2 5.4 60 803-891 124-185 (441)
346 PHA00673 acetyltransferase dom 38.9 44 0.00094 33.6 4.5 45 511-555 87-134 (154)
347 KOG4185 Predicted E3 ubiquitin 38.1 18 0.0004 40.3 1.9 46 718-765 3-54 (296)
348 PRK14951 DNA polymerase III su 37.5 1.6E+02 0.0034 36.6 9.9 22 300-321 42-63 (618)
349 PRK14974 cell division protein 37.1 1.2E+02 0.0025 34.7 8.1 43 512-555 223-270 (336)
350 PRK14959 DNA polymerase III su 36.4 2.9E+02 0.0064 34.3 11.8 22 299-320 41-62 (624)
351 KOG2114 Vacuolar assembly/sort 36.3 26 0.00057 43.5 2.9 49 709-763 826-880 (933)
352 cd01121 Sms Sms (bacterial rad 35.6 1.7E+02 0.0037 33.9 9.3 20 300-319 86-105 (372)
353 PRK07471 DNA polymerase III su 35.6 2E+02 0.0044 33.2 9.9 25 298-322 43-67 (365)
354 CHL00095 clpC Clp protease ATP 35.5 87 0.0019 40.4 7.6 22 298-319 202-223 (821)
355 KOG0825 PHD Zn-finger protein 34.7 8.2 0.00018 47.0 -1.6 47 721-770 126-175 (1134)
356 PHA03372 DNA packaging termina 34.5 99 0.0021 37.8 7.1 20 507-526 295-314 (668)
357 PRK05703 flhF flagellar biosyn 33.9 2.1E+02 0.0044 33.9 9.8 54 512-566 300-359 (424)
358 PRK12422 chromosomal replicati 33.0 1.4E+02 0.0031 35.5 8.3 21 299-319 144-164 (445)
359 PRK10689 transcription-repair 33.0 1.9E+02 0.0041 38.8 10.1 73 854-927 651-727 (1147)
360 PRK05563 DNA polymerase III su 32.3 1.7E+02 0.0037 36.0 9.0 21 299-319 41-61 (559)
361 PTZ00062 glutaredoxin; Provisi 31.7 2E+02 0.0042 30.4 8.2 56 854-910 114-175 (204)
362 cd03031 GRX_GRX_like Glutaredo 31.6 1.4E+02 0.0031 29.7 6.7 47 854-900 1-54 (147)
363 PRK13826 Dtr system oriT relax 30.7 2.4E+02 0.0053 37.4 10.3 50 513-564 470-520 (1102)
364 cd05566 PTS_IIB_galactitol PTS 30.5 58 0.0013 29.0 3.6 55 386-442 2-58 (89)
365 PRK06893 DNA replication initi 30.5 2.3E+02 0.0051 30.2 8.8 19 300-318 43-61 (229)
366 PRK11054 helD DNA helicase IV; 30.4 78 0.0017 39.8 5.8 39 273-320 195-233 (684)
367 PF00462 Glutaredoxin: Glutare 30.1 2.4E+02 0.0053 22.7 7.0 45 855-899 1-46 (60)
368 PRK05642 DNA replication initi 29.8 2.3E+02 0.0049 30.4 8.6 36 513-548 99-138 (234)
369 cd05568 PTS_IIB_bgl_like PTS_I 29.6 80 0.0017 27.5 4.3 53 386-442 2-56 (85)
370 PRK14965 DNA polymerase III su 28.3 3.8E+02 0.0082 33.1 11.1 21 300-320 42-62 (576)
371 KOG0925 mRNA splicing factor A 27.5 41 0.0009 39.4 2.4 45 511-559 159-211 (699)
372 cd03027 GRX_DEP Glutaredoxin ( 27.3 2.5E+02 0.0053 23.7 6.8 58 854-912 2-60 (73)
373 PRK08769 DNA polymerase III su 26.5 2.7E+02 0.0059 31.5 8.7 49 274-322 4-52 (319)
374 TIGR03345 VI_ClpV1 type VI sec 26.3 2.5E+02 0.0054 36.4 9.4 37 282-319 195-231 (852)
375 KOG0926 DEAH-box RNA helicase 26.2 55 0.0012 40.8 3.2 61 897-960 622-701 (1172)
376 cd05563 PTS_IIB_ascorbate PTS_ 26.1 1.3E+02 0.0029 26.4 5.1 52 387-442 2-55 (86)
377 PRK13342 recombination factor 26.0 1.8E+02 0.004 34.1 7.6 20 298-317 38-57 (413)
378 PRK14971 DNA polymerase III su 25.9 6.7E+02 0.014 31.2 12.7 22 299-320 42-63 (614)
379 KOG2979 Protein involved in DN 25.9 1.5E+02 0.0033 32.0 6.0 46 717-762 175-222 (262)
380 PRK13709 conjugal transfer nic 25.6 3.9E+02 0.0085 37.4 11.3 43 272-319 965-1007(1747)
381 COG2247 LytB Putative cell wal 25.5 1.4E+02 0.0031 33.3 5.9 64 852-921 76-144 (337)
382 COG5175 MOT2 Transcriptional r 25.5 44 0.00094 37.0 2.0 53 716-770 12-68 (480)
383 PRK00771 signal recognition pa 25.1 1.8E+02 0.004 34.4 7.3 22 299-320 98-119 (437)
384 PF00448 SRP54: SRP54-type pro 25.0 1.1E+02 0.0024 32.0 4.9 55 512-566 84-142 (196)
385 PF05621 TniB: Bacterial TniB 24.9 45 0.00097 37.2 2.0 43 507-549 141-189 (302)
386 cd00133 PTS_IIB PTS_IIB: subun 24.5 1.5E+02 0.0032 25.2 5.0 53 387-442 2-56 (84)
387 PF10272 Tmpp129: Putative tra 24.2 53 0.0011 37.6 2.5 25 741-765 316-350 (358)
388 COG1702 PhoH Phosphate starvat 24.2 41 0.00089 38.0 1.6 40 513-554 245-284 (348)
389 KOG4164 Cyclin ik3-1/CABLES [C 24.0 1.9E+02 0.004 33.2 6.5 78 95-190 168-245 (497)
390 PRK07952 DNA replication prote 23.6 2.3E+02 0.0049 30.8 7.2 43 277-319 79-122 (244)
391 PRK10329 glutaredoxin-like pro 23.3 3.5E+02 0.0075 23.7 7.1 55 854-910 2-57 (81)
392 KOG0332 ATP-dependent RNA heli 23.1 3.7E+02 0.0081 30.9 8.6 37 512-548 233-273 (477)
393 PF00308 Bac_DnaA: Bacterial d 23.0 3.6E+02 0.0078 28.6 8.5 36 512-547 98-137 (219)
394 PF00580 UvrD-helicase: UvrD/R 22.7 1.1E+02 0.0023 33.9 4.7 37 275-320 1-37 (315)
395 cd01524 RHOD_Pyr_redox Member 22.7 1.1E+02 0.0024 27.0 3.9 34 854-887 53-86 (90)
396 PRK13556 azoreductase; Provisi 22.2 54 0.0012 34.5 2.0 30 920-949 87-119 (208)
397 PRK14712 conjugal transfer nic 22.2 5E+02 0.011 36.0 11.1 51 512-564 931-982 (1623)
398 KOG2817 Predicted E3 ubiquitin 22.1 48 0.001 37.8 1.6 41 717-757 333-378 (394)
399 PF10367 Vps39_2: Vacuolar sor 22.0 49 0.0011 30.5 1.5 30 717-746 77-108 (109)
400 PF10593 Z1: Z1 domain; Inter 21.9 4.2E+02 0.0091 28.7 8.8 109 859-976 94-205 (239)
401 PRK10638 glutaredoxin 3; Provi 21.8 3E+02 0.0066 23.9 6.5 56 854-910 3-59 (83)
402 PRK11889 flhF flagellar biosyn 21.6 3.4E+02 0.0074 31.9 8.3 20 300-319 245-264 (436)
403 COG1110 Reverse gyrase [DNA re 21.6 2.5E+02 0.0055 36.4 7.7 62 853-915 126-193 (1187)
404 COG1200 RecG RecG-like helicas 21.5 2.1E+02 0.0045 35.5 6.8 65 863-928 326-390 (677)
405 KOG1807 Helicases [Replication 21.3 2.5E+02 0.0054 35.2 7.3 41 273-320 377-417 (1025)
406 smart00744 RINGv The RING-vari 21.2 60 0.0013 25.8 1.6 38 720-757 1-46 (49)
407 KOG4367 Predicted Zn-finger pr 20.9 40 0.00087 38.4 0.7 32 719-750 5-36 (699)
408 cd06533 Glyco_transf_WecG_TagA 20.8 5.4E+02 0.012 26.1 9.0 57 854-911 48-107 (171)
409 PRK07993 DNA polymerase III su 20.8 4E+02 0.0088 30.3 8.8 49 274-322 2-50 (334)
410 PRK11034 clpA ATP-dependent Cl 20.7 1.3E+02 0.0029 38.2 5.3 20 299-318 210-229 (758)
411 PF12622 NpwBP: mRNA biogenesi 20.6 49 0.0011 26.3 0.9 11 926-936 4-14 (48)
412 TIGR00696 wecB_tagA_cpsF bacte 20.3 6.5E+02 0.014 25.8 9.3 57 854-911 50-108 (177)
413 cd01523 RHOD_Lact_B Member of 20.2 1.4E+02 0.003 27.0 4.0 34 854-887 63-96 (100)
No 1
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=100.00 E-value=2.8e-104 Score=856.21 Aligned_cols=575 Identities=41% Similarity=0.683 Sum_probs=482.2
Q ss_pred cCCCCCCcccccCchHHHHHHHHHHHhhhcCCCccCceeecCCCCchHHHHHHHHHhhccccccchhhhccccccccccC
Q 001840 263 EATLPDGLLSVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNL 342 (1007)
Q Consensus 263 ~~~~P~~~~~~~LrpyQ~~~v~wml~~e~~~~~~~GGILADdmGLGKTiqaIali~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (1007)
...+|.++ -++|+|||+++|.|+..+|.+. ..|||||||||+|||||+|||++..
T Consensus 174 ~aeqP~dl-ii~LL~fQkE~l~Wl~~QE~Ss--~~GGiLADEMGMGKTIQtIaLllae---------------------- 228 (791)
T KOG1002|consen 174 RAEQPDDL-IIPLLPFQKEGLAWLTSQEESS--VAGGILADEMGMGKTIQTIALLLAE---------------------- 228 (791)
T ss_pred cccCcccc-eecchhhhHHHHHHHHHhhhhh--hccceehhhhccchHHHHHHHHHhc----------------------
Confidence 35567775 7899999999999999999875 4899999999999999999999762
Q ss_pred CCCCCCCCcCcccccccCCCCCCCCCCcccccccccCCCCCCCceEEEcChhhHHHHHHHHHHHcCCCCCeEEEEEeCCC
Q 001840 343 DDDDDNGNAGLDKVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPASVLRQWARELEDKVPDKAALSVLIYHGGS 422 (1007)
Q Consensus 343 ~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tLIV~P~sLl~QW~~Ei~k~~~~~~~l~vlv~~g~~ 422 (1007)
...++||||||.-.+.||.+||.+|... .+++++|||.+
T Consensus 229 ---------------------------------------~~ra~tLVvaP~VAlmQW~nEI~~~T~g--slkv~~YhG~~ 267 (791)
T KOG1002|consen 229 ---------------------------------------VDRAPTLVVAPTVALMQWKNEIERHTSG--SLKVYIYHGAK 267 (791)
T ss_pred ---------------------------------------cccCCeeEEccHHHHHHHHHHHHHhccC--ceEEEEEeccc
Confidence 1224599999999999999999999874 89999999999
Q ss_pred CCCCccccCCCcEEEechhhhhccCCCCCCCchhhhhhhcCcccCCcchhhhhhhhcccccccccccCCCCCCCCCCccc
Q 001840 423 RTKDPVELAKYDVVLTTYSIVTNEVPKQPSVDEEEADEKNGETYGLSSEFSVNKKRKKISNVSKRGKKGKKGNVNSSIDY 502 (1007)
Q Consensus 423 r~~~~~~l~~~dVVItSy~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~k~~~~~~k~~~~~~~~~ 502 (1007)
|.++...+..||||+|||.++.+.+.++ .+| |. + | ...+.
T Consensus 268 R~~nikel~~YDvVLTty~vvEs~yRk~--------------~~G----fr------------r------K----ngv~k 307 (791)
T KOG1002|consen 268 RDKNIKELMNYDVVLTTYAVVESVYRKQ--------------DYG----FR------------R------K----NGVDK 307 (791)
T ss_pred ccCCHHHhhcCcEEEEecHHHHHHHHhc--------------ccc----cc------------c------c----CCccc
Confidence 9999999999999999999999876552 111 00 0 0 12233
Q ss_pred CCCCccccceeEEEEccCcccCCcccHHHHHHHhcccCcEEEEeccCCCCChhHHHHHHHHHhcCCcchh----------
Q 001840 503 GCGPLAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRFLKYDPYAVY---------- 572 (1007)
Q Consensus 503 ~~~~L~~~~w~rVIlDEAH~iKN~~s~~~kal~~L~a~~r~lLTGTPi~N~l~DL~sll~fL~~~~~~~~---------- 572 (1007)
..++||.+.|.|||+||||.||++.+.+++|++.|++.+||||||||+||++.|||||++||+.+||.-+
T Consensus 308 e~SlLHsi~~~RiIlDEAH~IK~R~snTArAV~~L~tt~rw~LSGTPLQNrigElySLiRFL~i~Pfsyyfc~~cdc~~~ 387 (791)
T KOG1002|consen 308 EKSLLHSIKFYRIILDEAHNIKDRQSNTARAVFALETTYRWCLSGTPLQNRIGELYSLIRFLNINPFSYYFCTKCDCASL 387 (791)
T ss_pred ccchhhhceeeeeehhhhcccccccccHHHHHHhhHhhhhhhccCCcchhhHHHHHHHHHHHccCcchhhhhhhcccccc
Confidence 4568999999999999999999999999999999999999999999999999999999999999886422
Q ss_pred ---------------------HHHHHHcccCcccCc-----hhHHHHHHHHHHHhhhhcccCcccCCCccccCCCceEEE
Q 001840 573 ---------------------KSFYSTIKIPISRNS-----LHGYKKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISL 626 (1007)
Q Consensus 573 ---------------------~~F~~~~~~pi~~~~-----~~~~~~L~~~L~~~~lRRtk~~v~~g~~~~~LP~k~~~~ 626 (1007)
-.|......||.... ..++...+.+|+.+|+||||-.-.+ -+.|||+.+.+
T Consensus 388 ~~~ftdr~~c~~c~h~~m~h~~~~n~~mlk~IqkfG~eGpGk~af~~~h~llk~ImlrrTkl~RAd---DLgLPPRiv~v 464 (791)
T KOG1002|consen 388 DWKFTDRMHCDHCSHNIMQHTCFFNHFMLKPIQKFGVEGPGKEAFNNIHTLLKNIMLRRTKLERAD---DLGLPPRIVTV 464 (791)
T ss_pred ceeecccccCCcccchhhhhhhhhcccccccchhhcccCchHHHHHHHHHHHHHHHHHHhhccccc---ccCCCccceee
Confidence 124444456665432 3456788899999999999864333 25799999999
Q ss_pred EEecCCHHHHHHHHHHHHHHHHHHHHHhhcCCCcccHHHHHHHHHHHHhhcCcccccccccccccccchHHHhhcCChHH
Q 001840 627 TKVDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANILLMLLRLRQACDHPLLVKEYDFDSVGKISGEMAKRLPRDM 706 (1007)
Q Consensus 627 v~v~ls~~er~lY~~l~~~~~~~~~~~~~~g~~~~~~~~il~~L~rLRq~~~hP~L~~~~~~~~~~~~~~e~~~~~~~~~ 706 (1007)
..--|+.+|..+|+.+...+...|+.|...|.+..+|++|+.++.||||+++||.|+.-... +.++.
T Consensus 465 RrD~fn~eE~D~YeSLY~dSkrkfntyieeGvvlNNYAnIF~LitRmRQ~aDHP~LVl~S~~-----------~n~~~-- 531 (791)
T KOG1002|consen 465 RRDFFNEEEKDLYESLYKDSKRKFNTYIEEGVVLNNYANIFTLITRMRQAADHPDLVLYSAN-----------ANLPD-- 531 (791)
T ss_pred ehhhhhhHHHHHHHHHHHhhHHhhhhHHhhhhhhhhHHHHHHHHHHHHHhccCcceeeehhh-----------cCCCc--
Confidence 99999999999999999999999999999999999999999999999999999999863110 01110
Q ss_pred HHHHHhhcccccccccccCCCCCCccccccCcccchhhhhhhccC--CCCCCCCcchhhcccccceecccccccccCCCC
Q 001840 707 LIDLLSRLETSSAICCVCSDPPEDSVVTMCGHVFCYQCASEYITG--DDNMCPAPRCKEQLGADVVFSKTTLKNCVSDDG 784 (1007)
Q Consensus 707 ~~~ll~~le~~~~~C~~c~d~~~~~v~t~CgH~~c~~ci~~~~~~--~~~~cp~~~cr~~l~~~~~~~~~~l~~~~~~~~ 784 (1007)
-..+..+|.+|.|+.++++++.|.|.||.-|+.+|+.+ +.....||.|...+..+.-. ..+..
T Consensus 532 -------enk~~~~C~lc~d~aed~i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~LsiDlse--~alek------ 596 (791)
T KOG1002|consen 532 -------ENKGEVECGLCHDPAEDYIESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLSIDLSE--PALEK------ 596 (791)
T ss_pred -------cccCceeecccCChhhhhHhhhhhHHHHHHHHHHHHHhhhcccCCCCccccccccccccc--hhhhh------
Confidence 01245789999999999999999999999999998753 33334455787777665211 11100
Q ss_pred CCCCCCCcccc----cCCCcCcccchhhHHHHHHHHHhhhhcccccchhhhhhcccCCCCCccccCCCCCCCCeEEEEec
Q 001840 785 GGSPTDSPFAD----KSGILDNEYISSKIRTVLDILHTQCELNTKCSIVEIHDLAGSNGSSAVHSKSPIEGPIKSIVFSQ 860 (1007)
Q Consensus 785 ~~~~~~~~~~~----~~~~~~~~~~SsKl~~l~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvIIFsq 860 (1007)
.....+.. ..+..+.+..|+|+++|.+.|..+.+.+. ..|.|||||
T Consensus 597 ---~~l~~Fk~sSIlnRinm~~~qsSTKIEAL~EEl~~l~~rd~---------------------------t~KsIVFSQ 646 (791)
T KOG1002|consen 597 ---TDLKGFKASSILNRINMDDWQSSTKIEALVEELYFLRERDR---------------------------TAKSIVFSQ 646 (791)
T ss_pred ---cchhhhhhHHHhhhcchhhhcchhHHHHHHHHHHHHHHccc---------------------------chhhhhHHH
Confidence 00011111 12234567789999999999998887655 459999999
Q ss_pred chhHHHHHHHHHhhcCCeEEEecCCCChHHHHHHHHhhccCcccceeeeeccCcccccccccCCEEEEecCCCCCChhHH
Q 001840 861 WTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDLWWNPTTEDQ 940 (1007)
Q Consensus 861 ~~~~ld~L~~~L~~~gi~~~~i~Gs~s~~~R~~~I~~F~~~~~~~VlLlStkagg~GLNL~~A~~VI~~Dp~WNp~~e~Q 940 (1007)
||+|||+|...|.+.|+..+.+.|+|++++|.+.|+.|.++++++|||+|++|||+.|||+.|++|++|||||||+.+.|
T Consensus 647 FTSmLDLi~~rL~kaGfscVkL~GsMs~~ardatik~F~nd~~c~vfLvSLkAGGVALNLteASqVFmmDPWWNpaVe~Q 726 (791)
T KOG1002|consen 647 FTSMLDLIEWRLGKAGFSCVKLVGSMSPAARDATIKYFKNDIDCRVFLVSLKAGGVALNLTEASQVFMMDPWWNPAVEWQ 726 (791)
T ss_pred HHHHHHHHHHHhhccCceEEEeccCCChHHHHHHHHHhccCCCeEEEEEEeccCceEeeechhceeEeecccccHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhHhhhccCCcccEEEEEEEeCCCHHHHHHHHHHHHHHHHHHhhcCCCCCCccCCCCHHHHHhhhc
Q 001840 941 AVDRAHRIGQTRPVTVTRLTIRDTVEDRILKLQDDKRKMVASAFGEDQGGGTASRLTVEDLRYLFM 1006 (1007)
Q Consensus 941 aigRi~RiGQ~k~V~VyrLi~~~TIEe~I~~lq~~K~~li~~~~g~~~~~~~~~~~t~edl~~lf~ 1006 (1007)
|.+|+|||||.+||.|.+|++++|||++|+++|++|..|+++.+|.++. ...+||.||+++||.
T Consensus 727 a~DRiHRIGQ~rPvkvvrf~iEnsiE~kIieLQeKKa~mihaTi~qde~--Ai~kLt~eDmqfLF~ 790 (791)
T KOG1002|consen 727 AQDRIHRIGQYRPVKVVRFCIENSIEEKIIELQEKKANMIHATIGQDEE--AISKLTEEDMQFLFN 790 (791)
T ss_pred hhhhHHhhcCccceeEEEeehhccHHHHHHHHHHHHhhhhhhhcCCcHH--HHHhcCHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999998753 357899999999995
No 2
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=100.00 E-value=1e-88 Score=763.63 Aligned_cols=545 Identities=39% Similarity=0.637 Sum_probs=433.8
Q ss_pred CCCCCCcccccCchHHHHHHHHHHHhhhcCCCccCceeecCCCCchHHHHHHHHHhhccccccchhhhccccccccccCC
Q 001840 264 ATLPDGLLSVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLD 343 (1007)
Q Consensus 264 ~~~P~~~~~~~LrpyQ~~~v~wml~~e~~~~~~~GGILADdmGLGKTiqaIali~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (1007)
.+-|.++ .++|.|||+.|+.||+.+|... ..|||||||||||||+++|++|+..+........
T Consensus 316 te~P~g~-~v~LmpHQkaal~Wl~wRE~q~--~~GGILaddmGLGKTlsmislil~qK~~~~~~~~-------------- 378 (901)
T KOG4439|consen 316 TETPDGL-KVELMPHQKAALRWLLWRESQP--PSGGILADDMGLGKTLSMISLILHQKAARKAREK-------------- 378 (901)
T ss_pred cCCCCcc-eeecchhhhhhhhhhcccccCC--CCCcccccccccccchHHHHHHHHHHHHHHhhcc--------------
Confidence 3445554 8999999999999999999864 5899999999999999999999886654110000
Q ss_pred CCCCCCCcCcccccccCCCCCCCCCCcccccccccCCCCCCCceEEEcChhhHHHHHHHHHHHcCCCCCeEEEEEeCCC-
Q 001840 344 DDDDNGNAGLDKVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPASVLRQWARELEDKVPDKAALSVLIYHGGS- 422 (1007)
Q Consensus 344 ~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tLIV~P~sLl~QW~~Ei~k~~~~~~~l~vlv~~g~~- 422 (1007)
......+||||||++|+.||..|+++.+... .++|++|||.+
T Consensus 379 ------------------------------------~~~~a~~TLII~PaSli~qW~~Ev~~rl~~n-~LsV~~~HG~n~ 421 (901)
T KOG4439|consen 379 ------------------------------------KGESASKTLIICPASLIHQWEAEVARRLEQN-ALSVYLYHGPNK 421 (901)
T ss_pred ------------------------------------cccccCCeEEeCcHHHHHHHHHHHHHHHhhc-ceEEEEecCCcc
Confidence 0011124999999999999999999998765 89999999999
Q ss_pred CCCCccccCCCcEEEechhhhhccCCCCCCCchhhhhhhcCcccCCcchhhhhhhhcccccccccccCCCCCCCCCCccc
Q 001840 423 RTKDPVELAKYDVVLTTYSIVTNEVPKQPSVDEEEADEKNGETYGLSSEFSVNKKRKKISNVSKRGKKGKKGNVNSSIDY 502 (1007)
Q Consensus 423 r~~~~~~l~~~dVVItSy~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~k~~~~~~k~~~~~~~~~ 502 (1007)
|......+.+||||||||..+.+... ++.. ...
T Consensus 422 r~i~~~~L~~YDvViTTY~lva~~~~-------~e~~----------------------------------------~~~ 454 (901)
T KOG4439|consen 422 REISAKELRKYDVVITTYNLVANKPD-------DELE----------------------------------------EGK 454 (901)
T ss_pred ccCCHHHHhhcceEEEeeeccccCCc-------hhhh----------------------------------------ccc
Confidence 77778899999999999999876210 0000 011
Q ss_pred CCCCccccceeEEEEccCcccCCcccHHHHHHHhcccCcEEEEeccCCCCChhHHHHHHHHHhcCCcchhHHHHHHcccC
Q 001840 503 GCGPLAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRFLKYDPYAVYKSFYSTIKIP 582 (1007)
Q Consensus 503 ~~~~L~~~~w~rVIlDEAH~iKN~~s~~~kal~~L~a~~r~lLTGTPi~N~l~DL~sll~fL~~~~~~~~~~F~~~~~~p 582 (1007)
..+||.++.|.||||||||.|||++++.+.|+|.|++..|||||||||||++.|+|+|++||+..||++.+.|.+.+..+
T Consensus 455 ~~spL~~I~W~RVILDEAH~IrN~~tq~S~AVC~L~a~~RWclTGTPiqNn~~DvysLlrFLr~~pF~D~~~Wke~i~~~ 534 (901)
T KOG4439|consen 455 NSSPLARIAWSRVILDEAHNIRNSNTQCSKAVCKLSAKSRWCLTGTPIQNNLWDVYSLLRFLRCPPFGDLKQWKENIDNM 534 (901)
T ss_pred CccHHHHhhHHHhhhhhhhhhcccchhHHHHHHHHhhcceeecccCccccchhHHHHHHHHhcCCCcchHHHHHHhccCc
Confidence 33689999999999999999999999999999999999999999999999999999999999999999999999998654
Q ss_pred cccCchhHHHHHHHHHHHhhhhcccCcccCCCccccCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHHHhh-------
Q 001840 583 ISRNSLHGYKKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEWAFYKKLESDSLKKFKAFAD------- 655 (1007)
Q Consensus 583 i~~~~~~~~~~L~~~L~~~~lRRtk~~v~~g~~~~~LP~k~~~~v~v~ls~~er~lY~~l~~~~~~~~~~~~~------- 655 (1007)
- ..+..++.-+.++.||||||.....+.+++.||++.++++.++|+..|...|+-+.+.++..+..+..
T Consensus 535 s----~~g~~rlnll~K~LmLRRTKdQl~a~~klv~Lp~k~i~l~~leLs~~E~~vY~i~~~askk~~kq~L~~~e~~~~ 610 (901)
T KOG4439|consen 535 S----KGGANRLNLLTKSLMLRRTKDQLQANGKLVNLPEKNIELHELELSGDEAKVYQIMMEASKKLFKQFLLQREDRNN 610 (901)
T ss_pred c----ccchhhhhhhhhhHHhhhhHHhhccccccccCcccceEEEEEeecchHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Confidence 3 34556777788999999999998888899999999999999999999999999999988888765421
Q ss_pred -----------------------------cCCCcccHHHHHHHHHHHHhhcCcccccccccccc-c--ccchHHHhhcCC
Q 001840 656 -----------------------------AGTVNQNYANILLMLLRLRQACDHPLLVKEYDFDS-V--GKISGEMAKRLP 703 (1007)
Q Consensus 656 -----------------------------~g~~~~~~~~il~~L~rLRq~~~hP~L~~~~~~~~-~--~~~~~e~~~~~~ 703 (1007)
.|........||.+|+||||+||||.+.+...... . .++..+..+.+.
T Consensus 611 ~~~~~s~~~~~~~~~e~~~~~~~~pR~~aagsn~~~~s~IL~LLlrLRQ~ccH~~~~k~~ld~~~~~~~g~~~sde~~~e 690 (901)
T KOG4439|consen 611 DGGYQSRNRFIGGHDEFGNYYNIGPRFLAAGSNFEIMSHILVLLLRLRQACCHFGLLKAALDPEEFQMNGGDDSDEEQLE 690 (901)
T ss_pred ccCccccchhccccccccccccccchhhhcCCchhhHHHHHHHHHHHHHHhcCcchhccccCHHHhhhcCcchhhhhhhh
Confidence 12222345679999999999999997776432211 1 111111122222
Q ss_pred hHHHHHHHhhcccccccccccCCCCCCccccccCcccchhhhhhhccCCCCCCCCcchhhcccccceecccccccccCCC
Q 001840 704 RDMLIDLLSRLETSSAICCVCSDPPEDSVVTMCGHVFCYQCASEYITGDDNMCPAPRCKEQLGADVVFSKTTLKNCVSDD 783 (1007)
Q Consensus 704 ~~~~~~ll~~le~~~~~C~~c~d~~~~~v~t~CgH~~c~~ci~~~~~~~~~~cp~~~cr~~l~~~~~~~~~~l~~~~~~~ 783 (1007)
.+.+.. +.... .|.|..- +|. ..
T Consensus 691 ~~~l~e-l~k~~-----------------~T~~~~D--------------------~~e-d~------------------ 713 (901)
T KOG4439|consen 691 EDNLAE-LEKND-----------------ETDCSDD--------------------NCE-DL------------------ 713 (901)
T ss_pred hhHHHh-hhhcc-----------------ccccccc--------------------ccc-cc------------------
Confidence 221111 11111 0001000 000 00
Q ss_pred CCCCCCCCcccccCCCcCcccchhhHHHHHHHHHhhhhcccccchhhhhhcccCCCCCccccCCCCCCCCeEEEEecchh
Q 001840 784 GGGSPTDSPFADKSGILDNEYISSKIRTVLDILHTQCELNTKCSIVEIHDLAGSNGSSAVHSKSPIEGPIKSIVFSQWTR 863 (1007)
Q Consensus 784 ~~~~~~~~~~~~~~~~~~~~~~SsKl~~l~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvIIFsq~~~ 863 (1007)
+.. -.....+..+.|.|+..+++++..+.... .+|+||.|||++
T Consensus 714 -------p~~-~~~q~Fe~~r~S~Ki~~~l~~le~i~~~s----------------------------keK~viVSQwts 757 (901)
T KOG4439|consen 714 -------PTA-FPDQAFEPDRPSCKIAMVLEILETILTSS----------------------------KEKVVIVSQWTS 757 (901)
T ss_pred -------ccc-chhhhcccccchhHHHHHHHHHHHHhhcc----------------------------cceeeehhHHHH
Confidence 000 00112344567999999999999883221 349999999999
Q ss_pred HHHHHHHHHhhcCCeEEEecCCCChHHHHHHHHhhccCc-ccceeeeeccCcccccccccCCEEEEecCCCCCChhHHHh
Q 001840 864 MLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDR-EITVMLMSLKAGNLGLNMVAASHVILLDLWWNPTTEDQAV 942 (1007)
Q Consensus 864 ~ld~L~~~L~~~gi~~~~i~Gs~s~~~R~~~I~~F~~~~-~~~VlLlStkagg~GLNL~~A~~VI~~Dp~WNp~~e~Qai 942 (1007)
+|++++..|.+.|..|..++|....++|+.+|+.||... ..+|||+|+.|||+||||+.|||+|++|+.|||+.+.||.
T Consensus 758 vLniv~~hi~~~g~~y~si~Gqv~vK~Rq~iv~~FN~~k~~~rVmLlSLtAGGVGLNL~GaNHlilvDlHWNPaLEqQAc 837 (901)
T KOG4439|consen 758 VLNIVRKHIQKGGHIYTSITGQVLVKDRQEIVDEFNQEKGGARVMLLSLTAGGVGLNLIGANHLILVDLHWNPALEQQAC 837 (901)
T ss_pred HHHHHHHHHhhCCeeeeeecCccchhHHHHHHHHHHhccCCceEEEEEEccCcceeeecccceEEEEecccCHHHHHHHH
Confidence 999999999999999999999999999999999999754 4999999999999999999999999999999999999999
Q ss_pred HhhhccCCcccEEEEEEEeCCCHHHHHHHHHHHHHHHHHHhhcCCCCCCccCCCCHHHHHhhhcC
Q 001840 943 DRAHRIGQTRPVTVTRLTIRDTVEDRILKLQDDKRKMVASAFGEDQGGGTASRLTVEDLRYLFMV 1007 (1007)
Q Consensus 943 gRi~RiGQ~k~V~VyrLi~~~TIEe~I~~lq~~K~~li~~~~g~~~~~~~~~~~t~edl~~lf~~ 1007 (1007)
+||+|+||+|+|+||||+++||||+||..+|++|.++...++.+... .....+|..||+.|||+
T Consensus 838 DRIYR~GQkK~V~IhR~~~~gTvEqrV~~LQdkKldlA~~VL~G~~t-r~~~kLT~adlk~LFgl 901 (901)
T KOG4439|consen 838 DRIYRMGQKKDVFIHRLMCKGTVEQRVKSLQDKKLDLAKGVLTGSAT-RKMNKLTLADLKKLFGL 901 (901)
T ss_pred HHHHHhcccCceEEEEEEecCcHHHHHHHHHHHHHHHHhhhccCccc-cccccccHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999964322 34688999999999986
No 3
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=100.00 E-value=2.1e-88 Score=767.73 Aligned_cols=460 Identities=31% Similarity=0.508 Sum_probs=404.1
Q ss_pred CCCCCcccccCchHHHHHHHHHHHhhhcCCCccCceeecCCCCchHHHHHHHHHhhccccccchhhhccccccccccCCC
Q 001840 265 TLPDGLLSVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLDD 344 (1007)
Q Consensus 265 ~~P~~~~~~~LrpyQ~~~v~wml~~e~~~~~~~GGILADdmGLGKTiqaIali~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (1007)
..|..+....||+||.+||.||+++...+ .+||||||||||||+|+||++.+.+..
T Consensus 158 ~sP~~v~~g~lr~YQveGlnWLi~l~eng---ingILaDEMGLGKTlQtIs~l~yl~~~--------------------- 213 (971)
T KOG0385|consen 158 DSPSYVKGGELRDYQLEGLNWLISLYENG---INGILADEMGLGKTLQTISLLGYLKGR--------------------- 213 (971)
T ss_pred CCchhhcCCccchhhhccHHHHHHHHhcC---cccEeehhcccchHHHHHHHHHHHHHh---------------------
Confidence 36777766899999999999999987654 569999999999999999999987653
Q ss_pred CCCCCCcCcccccccCCCCCCCCCCcccccccccCCCCCCCceEEEcChhhHHHHHHHHHHHcCCCCCeEEEEEeCCCCC
Q 001840 345 DDDNGNAGLDKVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRT 424 (1007)
Q Consensus 345 ~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tLIV~P~sLl~QW~~Ei~k~~~~~~~l~vlv~~g~~r~ 424 (1007)
+.-.+|.||+||.|++.||.+||.+|+| .+++++|+|.+..
T Consensus 214 ------------------------------------~~~~GPfLVi~P~StL~NW~~Ef~rf~P---~l~~~~~~Gdk~e 254 (971)
T KOG0385|consen 214 ------------------------------------KGIPGPFLVIAPKSTLDNWMNEFKRFTP---SLNVVVYHGDKEE 254 (971)
T ss_pred ------------------------------------cCCCCCeEEEeeHhhHHHHHHHHHHhCC---CcceEEEeCCHHH
Confidence 1334789999999999999999999999 8999999999844
Q ss_pred C-----CccccCCCcEEEechhhhhccCCCCCCCchhhhhhhcCcccCCcchhhhhhhhcccccccccccCCCCCCCCCC
Q 001840 425 K-----DPVELAKYDVVLTTYSIVTNEVPKQPSVDEEEADEKNGETYGLSSEFSVNKKRKKISNVSKRGKKGKKGNVNSS 499 (1007)
Q Consensus 425 ~-----~~~~l~~~dVVItSy~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~k~~~~~~k~~~~~~ 499 (1007)
+ +...-..+||+||||++..++-
T Consensus 255 R~~~~r~~~~~~~fdV~iTsYEi~i~dk---------------------------------------------------- 282 (971)
T KOG0385|consen 255 RAALRRDIMLPGRFDVCITSYEIAIKDK---------------------------------------------------- 282 (971)
T ss_pred HHHHHHHhhccCCCceEeehHHHHHhhH----------------------------------------------------
Confidence 3 2223358999999999987641
Q ss_pred cccCCCCccccceeEEEEccCcccCCcccHHHHHHHhcccCcEEEEeccCCCCChhHHHHHHHHHhcCCcchhHHHHHHc
Q 001840 500 IDYGCGPLAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRFLKYDPYAVYKSFYSTI 579 (1007)
Q Consensus 500 ~~~~~~~L~~~~w~rVIlDEAH~iKN~~s~~~kal~~L~a~~r~lLTGTPi~N~l~DL~sll~fL~~~~~~~~~~F~~~~ 579 (1007)
..|..+.|.++||||||+|||.++..++.++.+.+.+|++|||||+||++.|||+||+||.|+.|.+.+.|..+|
T Consensus 283 -----~~lk~~~W~ylvIDEaHRiKN~~s~L~~~lr~f~~~nrLLlTGTPLQNNL~ELWaLLnFllPdiF~~~e~F~swF 357 (971)
T KOG0385|consen 283 -----SFLKKFNWRYLVIDEAHRIKNEKSKLSKILREFKTDNRLLLTGTPLQNNLHELWALLNFLLPDIFNSAEDFDSWF 357 (971)
T ss_pred -----HHHhcCCceEEEechhhhhcchhhHHHHHHHHhcccceeEeeCCcccccHHHHHHHHHhhchhhccCHHHHHHHH
Confidence 247889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCcccCchhHHHHHHHHHHHhhhhcccCcccCCCccccCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 001840 580 KIPISRNSLHGYKKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEWAFYKKLESDSLKKFKAFADAGTV 659 (1007)
Q Consensus 580 ~~pi~~~~~~~~~~L~~~L~~~~lRRtk~~v~~g~~~~~LP~k~~~~v~v~ls~~er~lY~~l~~~~~~~~~~~~~~g~~ 659 (1007)
......+....+.+|+.+|++|+|||.|.+|.. .|||+.+..+++.|+..|++.|..++..-...+ ...+..
T Consensus 358 ~~~~~~~~~e~v~~Lh~vL~pFlLRR~K~dVe~-----sLppKkE~~iyvgms~mQkk~Y~~iL~kdl~~~---n~~~~~ 429 (971)
T KOG0385|consen 358 DFTNCEGDQELVSRLHKVLRPFLLRRIKSDVEK-----SLPPKKELIIYVGMSSMQKKWYKAILMKDLDAL---NGEGKG 429 (971)
T ss_pred cccccccCHHHHHHHHhhhhHHHHHHHHHhHhh-----cCCCcceeeEeccchHHHHHHHHHHHHhcchhh---cccccc
Confidence 887766677789999999999999999999986 799999999999999999999999876544332 222221
Q ss_pred cccHHHHHHHHHHHHhhcCcccccccccccccccchHHHhhcCChHHHHHHHhhcccccccccccCCCCCCccccccCcc
Q 001840 660 NQNYANILLMLLRLRQACDHPLLVKEYDFDSVGKISGEMAKRLPRDMLIDLLSRLETSSAICCVCSDPPEDSVVTMCGHV 739 (1007)
Q Consensus 660 ~~~~~~il~~L~rLRq~~~hP~L~~~~~~~~~~~~~~e~~~~~~~~~~~~ll~~le~~~~~C~~c~d~~~~~v~t~CgH~ 739 (1007)
....++.++++||++|+||.|+........ .+
T Consensus 430 --~k~kL~NI~mQLRKccnHPYLF~g~ePg~p-----------------------------------------yt----- 461 (971)
T KOG0385|consen 430 --EKTKLQNIMMQLRKCCNHPYLFDGAEPGPP-----------------------------------------YT----- 461 (971)
T ss_pred --hhhHHHHHHHHHHHhcCCccccCCCCCCCC-----------------------------------------CC-----
Confidence 357788999999999999999875322000 00
Q ss_pred cchhhhhhhccCCCCCCCCcchhhcccccceecccccccccCCCCCCCCCCCcccccCCCcCcccchhhHHHHHHHHHhh
Q 001840 740 FCYQCASEYITGDDNMCPAPRCKEQLGADVVFSKTTLKNCVSDDGGGSPTDSPFADKSGILDNEYISSKIRTVLDILHTQ 819 (1007)
Q Consensus 740 ~c~~ci~~~~~~~~~~cp~~~cr~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SsKl~~l~~lL~~~ 819 (1007)
........|+|+..|-.+|..+
T Consensus 462 ----------------------------------------------------------tdehLv~nSGKm~vLDkLL~~L 483 (971)
T KOG0385|consen 462 ----------------------------------------------------------TDEHLVTNSGKMLVLDKLLPKL 483 (971)
T ss_pred ----------------------------------------------------------cchHHHhcCcceehHHHHHHHH
Confidence 0001123588999999999999
Q ss_pred hhcccccchhhhhhcccCCCCCccccCCCCCCCCeEEEEecchhHHHHHHHHHhhcCCeEEEecCCCChHHHHHHHHhhc
Q 001840 820 CELNTKCSIVEIHDLAGSNGSSAVHSKSPIEGPIKSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFN 899 (1007)
Q Consensus 820 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvIIFsq~~~~ld~L~~~L~~~gi~~~~i~Gs~s~~~R~~~I~~F~ 899 (1007)
.+.|+ |||||||++.|||+|++++.-+++.|+||||+++-++|.++|+.|+
T Consensus 484 k~~Gh-----------------------------RVLIFSQmt~mLDILeDyc~~R~y~ycRiDGSt~~eeR~~aI~~fn 534 (971)
T KOG0385|consen 484 KEQGH-----------------------------RVLIFSQMTRMLDILEDYCMLRGYEYCRLDGSTSHEEREDAIEAFN 534 (971)
T ss_pred HhCCC-----------------------------eEEEeHHHHHHHHHHHHHHHhcCceeEeecCCCCcHHHHHHHHhcC
Confidence 99888 9999999999999999999999999999999999999999999999
Q ss_pred cCc-ccceeeeeccCcccccccccCCEEEEecCCCCCChhHHHhHhhhccCCcccEEEEEEEeCCCHHHHHHHHHHHHHH
Q 001840 900 TDR-EITVMLMSLKAGNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVEDRILKLQDDKRK 978 (1007)
Q Consensus 900 ~~~-~~~VlLlStkagg~GLNL~~A~~VI~~Dp~WNp~~e~QaigRi~RiGQ~k~V~VyrLi~~~TIEe~I~~lq~~K~~ 978 (1007)
.++ +.+|||+||+|||.||||+.|++||+||..|||....||.+|||||||+++|.||||++++||||+|+++...|.+
T Consensus 535 ~~~s~~FiFlLSTRAGGLGINL~aADtVIlyDSDWNPQ~DLQAmDRaHRIGQ~K~V~V~RLitentVEe~IveRA~~KL~ 614 (971)
T KOG0385|consen 535 APPSEKFIFLLSTRAGGLGINLTAADTVILYDSDWNPQVDLQAMDRAHRIGQKKPVVVYRLITENTVEEKIVERAAAKLR 614 (971)
T ss_pred CCCcceEEEEEeccccccccccccccEEEEecCCCCchhhhHHHHHHHhhCCcCceEEEEEeccchHHHHHHHHHHHHhc
Confidence 865 7899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCC
Q 001840 979 MVASAFGED 987 (1007)
Q Consensus 979 li~~~~g~~ 987 (1007)
|-+-+++.+
T Consensus 615 Ld~~VIq~g 623 (971)
T KOG0385|consen 615 LDKLVIQQG 623 (971)
T ss_pred hhhhhhccC
Confidence 999999765
No 4
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]
Probab=100.00 E-value=1.6e-86 Score=757.09 Aligned_cols=477 Identities=30% Similarity=0.479 Sum_probs=404.0
Q ss_pred cCCCCCCcccccCchHHHHHHHHHHHhhhcCCCccCceeecCCCCchHHHHHHHHHhhccccccchhhhccccccccccC
Q 001840 263 EATLPDGLLSVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNL 342 (1007)
Q Consensus 263 ~~~~P~~~~~~~LrpyQ~~~v~wml~~e~~~~~~~GGILADdmGLGKTiqaIali~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (1007)
.+.+|..+ ...|+|||++||.||+.+... ..|||||||||||||||+|+++......
T Consensus 195 ~~~vPg~I-~~~Lf~yQreGV~WL~~L~~q---~~GGILgDeMGLGKTIQiisFLaaL~~S------------------- 251 (923)
T KOG0387|consen 195 GFKVPGFI-WSKLFPYQREGVQWLWELYCQ---RAGGILGDEMGLGKTIQIISFLAALHHS------------------- 251 (923)
T ss_pred cccccHHH-HHHhhHHHHHHHHHHHHHHhc---cCCCeecccccCccchhHHHHHHHHhhc-------------------
Confidence 35667665 667999999999999988763 4799999999999999999999875432
Q ss_pred CCCCCCCCcCcccccccCCCCCCCCCCcccccccccCCCCCCCceEEEcChhhHHHHHHHHHHHcCCCCCeEEEEEeCCC
Q 001840 343 DDDDDNGNAGLDKVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPASVLRQWARELEDKVPDKAALSVLIYHGGS 422 (1007)
Q Consensus 343 ~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tLIV~P~sLl~QW~~Ei~k~~~~~~~l~vlv~~g~~ 422 (1007)
..-.+|+|||||++|+.||.+||.+|++ .++|.+|||..
T Consensus 252 --------------------------------------~k~~~paLIVCP~Tii~qW~~E~~~w~p---~~rv~ilh~t~ 290 (923)
T KOG0387|consen 252 --------------------------------------GKLTKPALIVCPATIIHQWMKEFQTWWP---PFRVFILHGTG 290 (923)
T ss_pred --------------------------------------ccccCceEEEccHHHHHHHHHHHHHhCc---ceEEEEEecCC
Confidence 0223779999999999999999999999 69999999987
Q ss_pred CCC---------------CccccCCCcEEEechhhhhccCCCCCCCchhhhhhhcCcccCCcchhhhhhhhccccccccc
Q 001840 423 RTK---------------DPVELAKYDVVLTTYSIVTNEVPKQPSVDEEEADEKNGETYGLSSEFSVNKKRKKISNVSKR 487 (1007)
Q Consensus 423 r~~---------------~~~~l~~~dVVItSy~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~k~ 487 (1007)
... .........|.||||+.++..-
T Consensus 291 s~~r~~~~~~~~~~~~~L~r~~~~~~~ilitty~~~r~~~---------------------------------------- 330 (923)
T KOG0387|consen 291 SGARYDASHSSHKKDKLLIRKVATDGGILITTYDGFRIQG---------------------------------------- 330 (923)
T ss_pred cccccccchhhhhhhhhheeeecccCcEEEEehhhhcccC----------------------------------------
Confidence 631 1122345568999999987431
Q ss_pred ccCCCCCCCCCCcccCCCCccccceeEEEEccCcccCCcccHHHHHHHhcccCcEEEEeccCCCCChhHHHHHHHHHhcC
Q 001840 488 GKKGKKGNVNSSIDYGCGPLAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRFLKYD 567 (1007)
Q Consensus 488 ~~~~~k~~~~~~~~~~~~~L~~~~w~rVIlDEAH~iKN~~s~~~kal~~L~a~~r~lLTGTPi~N~l~DL~sll~fL~~~ 567 (1007)
.++..+.|++||+||+|+|||++|+.+.+|+.|++.+|++||||||||++.|||+||.|+.|+
T Consensus 331 -----------------d~l~~~~W~y~ILDEGH~IrNpns~islackki~T~~RiILSGTPiQNnL~ELwsLfDFv~PG 393 (923)
T KOG0387|consen 331 -----------------DDLLGILWDYVILDEGHRIRNPNSKISLACKKIRTVHRIILSGTPIQNNLTELWSLFDFVFPG 393 (923)
T ss_pred -----------------cccccccccEEEecCcccccCCccHHHHHHHhccccceEEeeCccccchHHHHHHHhhhccCC
Confidence 247788999999999999999999999999999999999999999999999999999999999
Q ss_pred CcchhHHHHHHcccCcccCch------------hHHHHHHHHHHHhhhhcccCcccCCCccccCCCceEEEEEecCCHHH
Q 001840 568 PYAVYKSFYSTIKIPISRNSL------------HGYKKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEE 635 (1007)
Q Consensus 568 ~~~~~~~F~~~~~~pi~~~~~------------~~~~~L~~~L~~~~lRRtk~~v~~g~~~~~LP~k~~~~v~v~ls~~e 635 (1007)
.+++...|...|..||..+.. .....|+.+++|++|||+|.+|.. ..||.|.+.+++|.||+.|
T Consensus 394 ~Lgt~~~F~~~f~~pI~~GgyaNAs~~qv~~aykca~~Lr~lI~PylLRR~K~dv~~----~~Lp~K~E~VlfC~LT~~Q 469 (923)
T KOG0387|consen 394 KLGTLPVFQQNFEHPINRGGYANASPRQVQTAYKCAVALRDLISPYLLRRMKSDVKG----LKLPKKEEIVLFCRLTKLQ 469 (923)
T ss_pred cccchHHHHhhhhhheeccccCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhh----ccCCCccceEEEEeccHHH
Confidence 999999999999999977643 224568999999999999999975 5899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCcccHHHHHHHHHHHHhhcCcccccccccccccccchHHHhhcCChHHHHHHHhhcc
Q 001840 636 WAFYKKLESDSLKKFKAFADAGTVNQNYANILLMLLRLRQACDHPLLVKEYDFDSVGKISGEMAKRLPRDMLIDLLSRLE 715 (1007)
Q Consensus 636 r~lY~~l~~~~~~~~~~~~~~g~~~~~~~~il~~L~rLRq~~~hP~L~~~~~~~~~~~~~~e~~~~~~~~~~~~ll~~le 715 (1007)
|.+|+.+.+... +..... | ..+.|..+.-||.+||||.|+.........+
T Consensus 470 R~~Y~~fl~s~~--v~~i~n-g-----~~~~l~Gi~iLrkICnHPdll~~~~~~~~~~---------------------- 519 (923)
T KOG0387|consen 470 RRLYQRFLNSSE--VNKILN-G-----KRNCLSGIDILRKICNHPDLLDRRDEDEKQG---------------------- 519 (923)
T ss_pred HHHHHHHhhhHH--HHHHHc-C-----CccceechHHHHhhcCCcccccCcccccccC----------------------
Confidence 999999876532 222221 1 1345677788999999999876421000000
Q ss_pred cccccccccCCCCCCccccccCcccchhhhhhhccCCCCCCCCcchhhcccccceecccccccccCCCCCCCCCCCcccc
Q 001840 716 TSSAICCVCSDPPEDSVVTMCGHVFCYQCASEYITGDDNMCPAPRCKEQLGADVVFSKTTLKNCVSDDGGGSPTDSPFAD 795 (1007)
Q Consensus 716 ~~~~~C~~c~d~~~~~v~t~CgH~~c~~ci~~~~~~~~~~cp~~~cr~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 795 (1007)
| +
T Consensus 520 -----------------------------------------~-------------------------D------------ 521 (923)
T KOG0387|consen 520 -----------------------------------------P-------------------------D------------ 521 (923)
T ss_pred -----------------------------------------C-------------------------C------------
Confidence 0 0
Q ss_pred cCCCcCcccchhhHHHHHHHHHhhhhcccccchhhhhhcccCCCCCccccCCCCCCCCeEEEEecchhHHHHHHHHHh-h
Q 001840 796 KSGILDNEYISSKIRTVLDILHTQCELNTKCSIVEIHDLAGSNGSSAVHSKSPIEGPIKSIVFSQWTRMLDLVENSLN-Q 874 (1007)
Q Consensus 796 ~~~~~~~~~~SsKl~~l~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvIIFsq~~~~ld~L~~~L~-~ 874 (1007)
....+..|.|++.+.++|..+..++. |+|+|+|...||++|+..|. .
T Consensus 522 ---~~g~~k~sGKm~vl~~ll~~W~kqg~-----------------------------rvllFsqs~~mLdilE~fL~~~ 569 (923)
T KOG0387|consen 522 ---YEGDPKRSGKMKVLAKLLKDWKKQGD-----------------------------RVLLFSQSRQMLDILESFLRRA 569 (923)
T ss_pred ---cCCChhhcchHHHHHHHHHHHhhCCC-----------------------------EEEEehhHHHHHHHHHHHHHhc
Confidence 00123368999999999999999887 99999999999999999999 6
Q ss_pred cCCeEEEecCCCChHHHHHHHHhhccCcccceeeeeccCcccccccccCCEEEEecCCCCCChhHHHhHhhhccCCcccE
Q 001840 875 HCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPV 954 (1007)
Q Consensus 875 ~gi~~~~i~Gs~s~~~R~~~I~~F~~~~~~~VlLlStkagg~GLNL~~A~~VI~~Dp~WNp~~e~QaigRi~RiGQ~k~V 954 (1007)
.|+.|+++||.++.+.|+.+|++||++..+.|||++|++||.|||||.||+||+|||.|||++..||-.|+|||||+|.|
T Consensus 570 ~~ysylRmDGtT~~~~R~~lVd~Fne~~s~~VFLLTTrvGGLGlNLTgAnRVIIfDPdWNPStD~QAreRawRiGQkkdV 649 (923)
T KOG0387|consen 570 KGYSYLRMDGTTPAALRQKLVDRFNEDESIFVFLLTTRVGGLGLNLTGANRVIIFDPDWNPSTDNQARERAWRIGQKKDV 649 (923)
T ss_pred CCceEEEecCCCccchhhHHHHhhcCCCceEEEEEEecccccccccccCceEEEECCCCCCccchHHHHHHHhhcCccce
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEeCCCHHHHHHHHHHHHHHHHHHhhcCCCCCCccCCCCHHHHHhhhcC
Q 001840 955 TVTRLTIRDTVEDRILKLQDDKRKMVASAFGEDQGGGTASRLTVEDLRYLFMV 1007 (1007)
Q Consensus 955 ~VyrLi~~~TIEe~I~~lq~~K~~li~~~~g~~~~~~~~~~~t~edl~~lf~~ 1007 (1007)
.||||++.|||||+||.+|-.|..|.+.++..... ..-....||.+||.+
T Consensus 650 ~VYRL~t~gTIEEkiY~rQI~Kq~Ltn~il~~p~q---~RfF~~~dl~dLFsl 699 (923)
T KOG0387|consen 650 VVYRLMTAGTIEEKIYHRQIFKQFLTNRILKNPEQ---RRFFKGNDLHDLFSL 699 (923)
T ss_pred EEEEEecCCcHHHHHHHHHHHHHHHHHHHhcCHHH---hhhcccccHHHHhCC
Confidence 99999999999999999999999999999965432 233556778888754
No 5
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=100.00 E-value=2.2e-85 Score=770.18 Aligned_cols=526 Identities=31% Similarity=0.485 Sum_probs=424.3
Q ss_pred HHHHHHHhcCCC-Cc-cCCCCCCcccccCchHHHHHHHHHHHhhhcCCCccCceeecCCCCchHHHHHHHHHhhcccccc
Q 001840 249 IYQAALEDLNQP-KV-EATLPDGLLSVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSK 326 (1007)
Q Consensus 249 ~~~~~~~~l~~~-~~-~~~~P~~~~~~~LrpyQ~~~v~wml~~e~~~~~~~GGILADdmGLGKTiqaIali~~~~~~~~~ 326 (1007)
.+..+++.+-.+ +. ++.+|..+ +..||.||.+||.|+....+-.+| ||||||||||||+|+|++++...+..
T Consensus 949 ~erkFLeqlldpski~~y~Ip~pI-~a~LRkYQqEGVnWLaFLnky~LH---GILcDDMGLGKTLQticilAsd~y~r-- 1022 (1549)
T KOG0392|consen 949 EERKFLEQLLDPSKIPEYKIPVPI-SAKLRKYQQEGVNWLAFLNKYKLH---GILCDDMGLGKTLQTICILASDHYKR-- 1022 (1549)
T ss_pred HHHHHHHHhcCcccCCccccccch-hHHHHHHHHhccHHHHHHHHhccc---ceeeccccccHHHHHHHHHHHHHHhh--
Confidence 345566665443 33 46777776 788999999999999888776666 99999999999999999998755431
Q ss_pred chhhhccccccccccCCCCCCCCCcCcccccccCCCCCCCCCCcccccccccCCCCCCCceEEEcChhhHHHHHHHHHHH
Q 001840 327 SKTEVLGNQKTEALNLDDDDDNGNAGLDKVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPASVLRQWARELEDK 406 (1007)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tLIV~P~sLl~QW~~Ei~k~ 406 (1007)
+ .....-...|.|||||.+|..+|+.|+.++
T Consensus 1023 ---------~----------------------------------------s~~~e~~~~PSLIVCPsTLtGHW~~E~~kf 1053 (1549)
T KOG0392|consen 1023 ---------R----------------------------------------SESSEFNRLPSLIVCPSTLTGHWKSEVKKF 1053 (1549)
T ss_pred ---------c----------------------------------------ccchhhccCCeEEECCchhhhHHHHHHHHh
Confidence 0 000012234589999999999999999999
Q ss_pred cCCCCCeEEEEEeCCCC--CCCccccCCCcEEEechhhhhccCCCCCCCchhhhhhhcCcccCCcchhhhhhhhcccccc
Q 001840 407 VPDKAALSVLIYHGGSR--TKDPVELAKYDVVLTTYSIVTNEVPKQPSVDEEEADEKNGETYGLSSEFSVNKKRKKISNV 484 (1007)
Q Consensus 407 ~~~~~~l~vlv~~g~~r--~~~~~~l~~~dVVItSy~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~ 484 (1007)
+| .++|+.|.|... ........+++|+||||+++++++..
T Consensus 1054 ~p---fL~v~~yvg~p~~r~~lR~q~~~~~iiVtSYDv~RnD~d~----------------------------------- 1095 (1549)
T KOG0392|consen 1054 FP---FLKVLQYVGPPAERRELRDQYKNANIIVTSYDVVRNDVDY----------------------------------- 1095 (1549)
T ss_pred cc---hhhhhhhcCChHHHHHHHhhccccceEEeeHHHHHHHHHH-----------------------------------
Confidence 98 699999998763 44456678899999999999987522
Q ss_pred cccccCCCCCCCCCCcccCCCCccccceeEEEEccCcccCCcccHHHHHHHhcccCcEEEEeccCCCCChhHHHHHHHHH
Q 001840 485 SKRGKKGKKGNVNSSIDYGCGPLAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRFL 564 (1007)
Q Consensus 485 ~k~~~~~~k~~~~~~~~~~~~~L~~~~w~rVIlDEAH~iKN~~s~~~kal~~L~a~~r~lLTGTPi~N~l~DL~sll~fL 564 (1007)
|.++.|.++|+||+|-|||.+++.++++++|++.+|++||||||||++.||||+|+||
T Consensus 1096 ----------------------l~~~~wNYcVLDEGHVikN~ktkl~kavkqL~a~hRLILSGTPIQNnvleLWSLFdFL 1153 (1549)
T KOG0392|consen 1096 ----------------------LIKIDWNYCVLDEGHVIKNSKTKLTKAVKQLRANHRLILSGTPIQNNVLELWSLFDFL 1153 (1549)
T ss_pred ----------------------HHhcccceEEecCcceecchHHHHHHHHHHHhhcceEEeeCCCcccCHHHHHHHHHHh
Confidence 6788899999999999999999999999999999999999999999999999999999
Q ss_pred hcCCcchhHHHHHHcccCccc--Cc----------hhHHHHHHHHHHHhhhhcccCcccCCCccccCCCceEEEEEecCC
Q 001840 565 KYDPYAVYKSFYSTIKIPISR--NS----------LHGYKKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFS 632 (1007)
Q Consensus 565 ~~~~~~~~~~F~~~~~~pi~~--~~----------~~~~~~L~~~L~~~~lRRtk~~v~~g~~~~~LP~k~~~~v~v~ls 632 (1007)
+|+++++.+.|.++|.+||-. +. .-++..|++.+-|||+||+|++|+. +||||.++.++|+|+
T Consensus 1154 MPGfLGtEKqFqsrf~kpI~asRd~K~Sske~EaG~lAleaLHKqVLPF~LRRlKedVL~-----DLPpKIIQDyyCeLs 1228 (1549)
T KOG0392|consen 1154 MPGFLGTEKQFQSRFGKPILASRDPKSSSKEQEAGVLALEALHKQVLPFLLRRLKEDVLK-----DLPPKIIQDYYCELS 1228 (1549)
T ss_pred cccccCcHHHHHHHhcchhhhhcCcccchhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHh-----hCChhhhhheeeccC
Confidence 999999999999999999832 11 1246778889999999999999997 899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCcc--cHHHHHHHHHHHHhhcCcccccccccccccccchHHHhhcCChHHHHHH
Q 001840 633 KEEWAFYKKLESDSLKKFKAFADAGTVNQ--NYANILLMLLRLRQACDHPLLVKEYDFDSVGKISGEMAKRLPRDMLIDL 710 (1007)
Q Consensus 633 ~~er~lY~~l~~~~~~~~~~~~~~g~~~~--~~~~il~~L~rLRq~~~hP~L~~~~~~~~~~~~~~e~~~~~~~~~~~~l 710 (1007)
+.|+++|+.+..........-.+.+.... ...+++++|..||+.|+||.|+....-....
T Consensus 1229 ~lQ~kLY~df~~~~k~~~~~~~d~~~~S~gt~~~HvFqaLqYlrKLcnHpaLvlt~~hp~la------------------ 1290 (1549)
T KOG0392|consen 1229 PLQKKLYRDFVKKAKQCVSSQIDGGEESLGTDKTHVFQALQYLRKLCNHPALVLTPVHPDLA------------------ 1290 (1549)
T ss_pred HHHHHHHHHHHHHhccccccccccchhccCcchHHHHHHHHHHHHhcCCcceeeCCCcchHH------------------
Confidence 99999999987763322222222222222 2689999999999999999998752110000
Q ss_pred HhhcccccccccccCCCCCCccccccCcccchhhhhhhccCCCCCCCCcchhhcccccceecccccccccCCCCCCCCCC
Q 001840 711 LSRLETSSAICCVCSDPPEDSVVTMCGHVFCYQCASEYITGDDNMCPAPRCKEQLGADVVFSKTTLKNCVSDDGGGSPTD 790 (1007)
Q Consensus 711 l~~le~~~~~C~~c~d~~~~~v~t~CgH~~c~~ci~~~~~~~~~~cp~~~cr~~l~~~~~~~~~~l~~~~~~~~~~~~~~ 790 (1007)
.++..|+|.-
T Consensus 1291 --------------------~i~~~l~~~~-------------------------------------------------- 1300 (1549)
T KOG0392|consen 1291 --------------------AIVSHLAHFN-------------------------------------------------- 1300 (1549)
T ss_pred --------------------HHHHHHHHhh--------------------------------------------------
Confidence 0111111100
Q ss_pred CcccccCCCcCcccchhhHHHHHHHHHhhhhcccccchhhhhhcccCCCCCccccCCCCCCCCeEEEEecchhHHHHHHH
Q 001840 791 SPFADKSGILDNEYISSKIRTVLDILHTQCELNTKCSIVEIHDLAGSNGSSAVHSKSPIEGPIKSIVFSQWTRMLDLVEN 870 (1007)
Q Consensus 791 ~~~~~~~~~~~~~~~SsKl~~l~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvIIFsq~~~~ld~L~~ 870 (1007)
........++|+.+|.++|.+.--... +.+ .-...+..+.+|+||||||.+|+|++++
T Consensus 1301 -------~~LHdi~hspKl~AL~qLL~eCGig~~--~~~-------------~~g~~s~vsqHRiLIFcQlK~mlDlVek 1358 (1549)
T KOG0392|consen 1301 -------SSLHDIQHSPKLSALKQLLSECGIGNN--SDS-------------EVGTPSDVSQHRILIFCQLKSMLDLVEK 1358 (1549)
T ss_pred -------hhHHHhhhchhHHHHHHHHHHhCCCCC--Ccc-------------cccCcchhccceeEEeeeHHHHHHHHHH
Confidence 000112368999999999976432111 000 0011112456799999999999999999
Q ss_pred HHhhc---CCeEEEecCCCChHHHHHHHHhhccCcccceeeeeccCcccccccccCCEEEEecCCCCCChhHHHhHhhhc
Q 001840 871 SLNQH---CIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHR 947 (1007)
Q Consensus 871 ~L~~~---gi~~~~i~Gs~s~~~R~~~I~~F~~~~~~~VlLlStkagg~GLNL~~A~~VI~~Dp~WNp~~e~QaigRi~R 947 (1007)
-|-+. .+.|.|+||+.++.+|++++++||+||.+.|||++|.+||.|||||.|++|||++-.|||++..||+||+||
T Consensus 1359 DL~k~~mpsVtymRLDGSVpp~~R~kiV~~FN~DptIDvLlLTThVGGLGLNLTGADTVVFvEHDWNPMrDLQAMDRAHR 1438 (1549)
T KOG0392|consen 1359 DLFKKYMPSVTYMRLDGSVPPGDRQKIVERFNEDPTIDVLLLTTHVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRAHR 1438 (1549)
T ss_pred HHhhhhcCceeEEEecCCCCcHHHHHHHHHhcCCCceeEEEEeeeccccccccCCCceEEEEecCCCchhhHHHHHHHHh
Confidence 98877 677999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcccEEEEEEEeCCCHHHHHHHHHHHHHHHHHHhhcCCCCCCccCCCCHHHHHhhhc
Q 001840 948 IGQTRPVTVTRLTIRDTVEDRILKLQDDKRKMVASAFGEDQGGGTASRLTVEDLRYLFM 1006 (1007)
Q Consensus 948 iGQ~k~V~VyrLi~~~TIEe~I~~lq~~K~~li~~~~g~~~~~~~~~~~t~edl~~lf~ 1006 (1007)
|||+|.|.|||||++||+||+|+.+|.-|...++.+++.+. .....+..++|..||.
T Consensus 1439 IGQKrvVNVyRlItrGTLEEKVMgLQkFKmnvAntvInqqN--asl~tM~TdqLLdlF~ 1495 (1549)
T KOG0392|consen 1439 IGQKRVVNVYRLITRGTLEEKVMGLQKFKMNVANTVINQQN--ASLETMDTDQLLDLFT 1495 (1549)
T ss_pred hcCceeeeeeeehhcccHHHHHhhHHHHhhHHHHHHHhccc--ccccccCHHHHHHHhc
Confidence 99999999999999999999999999999999999998764 3456788999999996
No 6
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=100.00 E-value=3e-84 Score=737.12 Aligned_cols=487 Identities=31% Similarity=0.493 Sum_probs=392.4
Q ss_pred cccCchHHHHHHHHHHHhhhcCCCccCceeecCCCCchHHHHHHHHHhhccccccchhhhccccccccccCCCCCCCCCc
Q 001840 272 SVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLDDDDDNGNA 351 (1007)
Q Consensus 272 ~~~LrpyQ~~~v~wml~~e~~~~~~~GGILADdmGLGKTiqaIali~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (1007)
.+.|.|||+.||.|+.-..+..+ .||||||||||||+|+||++++++..
T Consensus 397 ~i~LkdYQlvGvNWL~Llyk~~l---~gILADEMGLGKTiQvIaFlayLkq~---------------------------- 445 (941)
T KOG0389|consen 397 GIQLKDYQLVGVNWLLLLYKKKL---NGILADEMGLGKTIQVIAFLAYLKQI---------------------------- 445 (941)
T ss_pred CCcccchhhhhHHHHHHHHHccc---cceehhhccCcchhHHHHHHHHHHHc----------------------------
Confidence 46799999999999998877654 48999999999999999999997654
Q ss_pred CcccccccCCCCCCCCCCcccccccccCCCCCCCceEEEcChhhHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCC-----
Q 001840 352 GLDKVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKD----- 426 (1007)
Q Consensus 352 ~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tLIV~P~sLl~QW~~Ei~k~~~~~~~l~vlv~~g~~r~~~----- 426 (1007)
+..+|.|||||.|.+.||.+||.+||| .++|..|||+...+.
T Consensus 446 ------------------------------g~~gpHLVVvPsSTleNWlrEf~kwCP---sl~Ve~YyGSq~ER~~lR~~ 492 (941)
T KOG0389|consen 446 ------------------------------GNPGPHLVVVPSSTLENWLREFAKWCP---SLKVEPYYGSQDERRELRER 492 (941)
T ss_pred ------------------------------CCCCCcEEEecchhHHHHHHHHHHhCC---ceEEEeccCcHHHHHHHHHH
Confidence 335779999999999999999999999 899999999973331
Q ss_pred -ccccCCCcEEEechhhhhccCCCCCCCchhhhhhhcCcccCCcchhhhhhhhcccccccccccCCCCCCCCCCcccCCC
Q 001840 427 -PVELAKYDVVLTTYSIVTNEVPKQPSVDEEEADEKNGETYGLSSEFSVNKKRKKISNVSKRGKKGKKGNVNSSIDYGCG 505 (1007)
Q Consensus 427 -~~~l~~~dVVItSy~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~k~~~~~~k~~~~~~~~~~~~ 505 (1007)
...-..|||++|||..+.+.- .+..
T Consensus 493 i~~~~~~ydVllTTY~la~~~k------------------------------------------------------dDRs 518 (941)
T KOG0389|consen 493 IKKNKDDYDVLLTTYNLAASSK------------------------------------------------------DDRS 518 (941)
T ss_pred HhccCCCccEEEEEeecccCCh------------------------------------------------------HHHH
Confidence 112248999999999887421 1123
Q ss_pred CccccceeEEEEccCcccCCcccHHHHHHHhcccCcEEEEeccCCCCChhHHHHHHHHHhcCCcchh-HHHHHHcccCcc
Q 001840 506 PLAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRFLKYDPYAVY-KSFYSTIKIPIS 584 (1007)
Q Consensus 506 ~L~~~~w~rVIlDEAH~iKN~~s~~~kal~~L~a~~r~lLTGTPi~N~l~DL~sll~fL~~~~~~~~-~~F~~~~~~pi~ 584 (1007)
.|...+|++||.||+|.+||..|.+++.+..++|.+|++|||||+||++.||+|||.|+.|..|... ..+...|+.--.
T Consensus 519 flk~~~~n~viyDEgHmLKN~~SeRy~~LM~I~An~RlLLTGTPLQNNL~ELiSLL~FvlP~vF~~~~~dl~~if~~k~~ 598 (941)
T KOG0389|consen 519 FLKNQKFNYVIYDEGHMLKNRTSERYKHLMSINANFRLLLTGTPLQNNLKELISLLAFVLPKVFDSSMEDLDVIFKAKKT 598 (941)
T ss_pred HHHhccccEEEecchhhhhccchHHHHHhccccccceEEeeCCcccccHHHHHHHHHHHhhHhhhccchHHHHHHhccCC
Confidence 4778889999999999999999999999999999999999999999999999999999999998743 444444432211
Q ss_pred -cCc-------hhHHHHHHHHHHHhhhhcccCcccCCCccccCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHHHhhc
Q 001840 585 -RNS-------LHGYKKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEWAFYKKLESDSLKKFKAFADA 656 (1007)
Q Consensus 585 -~~~-------~~~~~~L~~~L~~~~lRRtk~~v~~g~~~~~LP~k~~~~v~v~ls~~er~lY~~l~~~~~~~~~~~~~~ 656 (1007)
.+. .+++.+...+++||+|||.|.+|++ .||||+.++.+|+|+..|+.+|..+.+............
T Consensus 599 ~d~d~e~~~l~qerIsrAK~im~PFILRR~K~qVL~-----~LPpK~~~Ie~c~mse~Q~~~Y~~~~~~~~~~~~~~~~n 673 (941)
T KOG0389|consen 599 SDGDIENALLSQERISRAKTIMKPFILRRLKSQVLK-----QLPPKIQRIEYCEMSEKQKQLYDELIELYDVKLNEVSKN 673 (941)
T ss_pred ccchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-----hcCCccceeEeeecchHHHHHHHHHHHHHhhhccccccc
Confidence 111 2356778899999999999999997 899999999999999999999999887663222111111
Q ss_pred CCCcccHHHHHHHHHHHHhhcCcccccccccccccccchHHHhhcCChH---------HHHH---HHhhccccccccccc
Q 001840 657 GTVNQNYANILLMLLRLRQACDHPLLVKEYDFDSVGKISGEMAKRLPRD---------MLID---LLSRLETSSAICCVC 724 (1007)
Q Consensus 657 g~~~~~~~~il~~L~rLRq~~~hP~L~~~~~~~~~~~~~~e~~~~~~~~---------~~~~---ll~~le~~~~~C~~c 724 (1007)
.. ..+ -..+++||++++||.|+..+..+..-. .+++.+-.+ .+.+ .+..+
T Consensus 674 -s~---~~~-~~vlmqlRK~AnHPLL~R~~Y~de~L~---~mak~il~e~ay~~~n~qyIfEDm~~msDf---------- 735 (941)
T KOG0389|consen 674 -SE---LKS-GNVLMQLRKAANHPLLFRSIYTDEKLR---KMAKRILNEPAYKKANEQYIFEDMEVMSDF---------- 735 (941)
T ss_pred -cc---ccc-chHHHHHHHHhcChhHHHHhccHHHHH---HHHHHHhCchhhhhcCHHHHHHHHHhhhHH----------
Confidence 00 111 447899999999999998766554211 122221110 1111 11111
Q ss_pred CCCCCCccccccCcccchhh--hhhhccCCCCCCCCcchhhcccccceecccccccccCCCCCCCCCCCcccccCCCcCc
Q 001840 725 SDPPEDSVVTMCGHVFCYQC--ASEYITGDDNMCPAPRCKEQLGADVVFSKTTLKNCVSDDGGGSPTDSPFADKSGILDN 802 (1007)
Q Consensus 725 ~d~~~~~v~t~CgH~~c~~c--i~~~~~~~~~~cp~~~cr~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 802 (1007)
--|..|.+. +..+ ....+.
T Consensus 736 -----------elHqLc~~f~~~~~f------------------------------------------------~L~d~~ 756 (941)
T KOG0389|consen 736 -----------ELHQLCCQFRHLSKF------------------------------------------------QLKDDL 756 (941)
T ss_pred -----------HHHHHHHhcCCCccc------------------------------------------------ccCCch
Confidence 134444331 1111 111233
Q ss_pred ccchhhHHHHHHHHHhhhhcccccchhhhhhcccCCCCCccccCCCCCCCCeEEEEecchhHHHHHHHHHhhcCCeEEEe
Q 001840 803 EYISSKIRTVLDILHTQCELNTKCSIVEIHDLAGSNGSSAVHSKSPIEGPIKSIVFSQWTRMLDLVENSLNQHCIQYRRL 882 (1007)
Q Consensus 803 ~~~SsKl~~l~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvIIFsq~~~~ld~L~~~L~~~gi~~~~i 882 (1007)
+-.|+|++.|-.+|.++...|+ |||||||||.|||+|+..|.-.++.|+|+
T Consensus 757 ~mdSgK~r~L~~LLp~~k~~G~-----------------------------RVLiFSQFTqmLDILE~~L~~l~~~ylRL 807 (941)
T KOG0389|consen 757 WMDSGKCRKLKELLPKIKKKGD-----------------------------RVLIFSQFTQMLDILEVVLDTLGYKYLRL 807 (941)
T ss_pred hhhhhhHhHHHHHHHHHhhcCC-----------------------------EEEEeeHHHHHHHHHHHHHHhcCceEEee
Confidence 4579999999999999998877 99999999999999999999999999999
Q ss_pred cCCCChHHHHHHHHhhccCcccceeeeeccCcccccccccCCEEEEecCCCCCChhHHHhHhhhccCCcccEEEEEEEeC
Q 001840 883 DGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIR 962 (1007)
Q Consensus 883 ~Gs~s~~~R~~~I~~F~~~~~~~VlLlStkagg~GLNL~~A~~VI~~Dp~WNp~~e~QaigRi~RiGQ~k~V~VyrLi~~ 962 (1007)
||+|....|+.+|++|+.+.+++|||+||+|||.||||++||+||++|..+||....||.+||||+||+|+|+|||||++
T Consensus 808 DGsTqV~~RQ~lId~Fn~d~difVFLLSTKAGG~GINLt~An~VIihD~dFNP~dD~QAEDRcHRvGQtkpVtV~rLItk 887 (941)
T KOG0389|consen 808 DGSTQVNDRQDLIDEFNTDKDIFVFLLSTKAGGFGINLTCANTVIIHDIDFNPYDDKQAEDRCHRVGQTKPVTVYRLITK 887 (941)
T ss_pred cCCccchHHHHHHHhhccCCceEEEEEeeccCcceecccccceEEEeecCCCCcccchhHHHHHhhCCcceeEEEEEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHhhcCC
Q 001840 963 DTVEDRILKLQDDKRKMVASAFGED 987 (1007)
Q Consensus 963 ~TIEe~I~~lq~~K~~li~~~~g~~ 987 (1007)
+||||.|+++.+.|..|-..+.+.+
T Consensus 888 ~TIEE~I~~lA~~KL~Le~~lt~~~ 912 (941)
T KOG0389|consen 888 STIEEGILRLAKTKLALEADLTEDG 912 (941)
T ss_pred CcHHHHHHHHHHHhhhhhhhhccCc
Confidence 9999999999999999877776554
No 7
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=100.00 E-value=4.8e-82 Score=777.63 Aligned_cols=474 Identities=29% Similarity=0.481 Sum_probs=400.7
Q ss_pred CCCCcccccCchHHHHHHHHHHHhhhcCCCccCceeecCCCCchHHHHHHHHHhhccccccchhhhccccccccccCCCC
Q 001840 266 LPDGLLSVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLDDD 345 (1007)
Q Consensus 266 ~P~~~~~~~LrpyQ~~~v~wml~~e~~~~~~~GGILADdmGLGKTiqaIali~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (1007)
+|..+ ...|||||++||.||+.+... ..|||||||||||||+|+|+++...+..
T Consensus 162 qP~~i-~~~Lr~YQleGlnWLi~l~~~---g~gGILADEMGLGKTlQaIalL~~L~~~---------------------- 215 (1033)
T PLN03142 162 QPSCI-KGKMRDYQLAGLNWLIRLYEN---GINGILADEMGLGKTLQTISLLGYLHEY---------------------- 215 (1033)
T ss_pred CChHh-ccchHHHHHHHHHHHHHHHhc---CCCEEEEeCCCccHHHHHHHHHHHHHHh----------------------
Confidence 45544 578999999999999987653 4689999999999999999999775432
Q ss_pred CCCCCcCcccccccCCCCCCCCCCcccccccccCCCCCCCceEEEcChhhHHHHHHHHHHHcCCCCCeEEEEEeCCCCCC
Q 001840 346 DDNGNAGLDKVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTK 425 (1007)
Q Consensus 346 ~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tLIV~P~sLl~QW~~Ei~k~~~~~~~l~vlv~~g~~r~~ 425 (1007)
....+++|||||++++.||.+||.+|++ .+++++|+|....+
T Consensus 216 -----------------------------------~~~~gp~LIVvP~SlL~nW~~Ei~kw~p---~l~v~~~~G~~~eR 257 (1033)
T PLN03142 216 -----------------------------------RGITGPHMVVAPKSTLGNWMNEIRRFCP---VLRAVKFHGNPEER 257 (1033)
T ss_pred -----------------------------------cCCCCCEEEEeChHHHHHHHHHHHHHCC---CCceEEEeCCHHHH
Confidence 1334679999999999999999999997 78999999986432
Q ss_pred Cc-----cccCCCcEEEechhhhhccCCCCCCCchhhhhhhcCcccCCcchhhhhhhhcccccccccccCCCCCCCCCCc
Q 001840 426 DP-----VELAKYDVVLTTYSIVTNEVPKQPSVDEEEADEKNGETYGLSSEFSVNKKRKKISNVSKRGKKGKKGNVNSSI 500 (1007)
Q Consensus 426 ~~-----~~l~~~dVVItSy~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~k~~~~~~k~~~~~~~ 500 (1007)
.. .....+|||||||+++.++.
T Consensus 258 ~~~~~~~~~~~~~dVvITSYe~l~~e~----------------------------------------------------- 284 (1033)
T PLN03142 258 AHQREELLVAGKFDVCVTSFEMAIKEK----------------------------------------------------- 284 (1033)
T ss_pred HHHHHHHhcccCCCcceecHHHHHHHH-----------------------------------------------------
Confidence 21 12357999999999987642
Q ss_pred ccCCCCccccceeEEEEccCcccCCcccHHHHHHHhcccCcEEEEeccCCCCChhHHHHHHHHHhcCCcchhHHHHHHcc
Q 001840 501 DYGCGPLAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRFLKYDPYAVYKSFYSTIK 580 (1007)
Q Consensus 501 ~~~~~~L~~~~w~rVIlDEAH~iKN~~s~~~kal~~L~a~~r~lLTGTPi~N~l~DL~sll~fL~~~~~~~~~~F~~~~~ 580 (1007)
..|..+.|++|||||||+|||..|+++++++.+++.+||+|||||++|++.|||+|++||.|+.|.....|...|.
T Consensus 285 ----~~L~k~~W~~VIvDEAHrIKN~~Sklskalr~L~a~~RLLLTGTPlqNnl~ELwsLL~FL~P~~f~s~~~F~~~f~ 360 (1033)
T PLN03142 285 ----TALKRFSWRYIIIDEAHRIKNENSLLSKTMRLFSTNYRLLITGTPLQNNLHELWALLNFLLPEIFSSAETFDEWFQ 360 (1033)
T ss_pred ----HHhccCCCCEEEEcCccccCCHHHHHHHHHHHhhcCcEEEEecCCCCCCHHHHHHHHhcCCCCcCCCHHHHHHHHc
Confidence 1266788999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cCcccCchhHHHHHHHHHHHhhhhcccCcccCCCccccCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHHHhhcCCCc
Q 001840 581 IPISRNSLHGYKKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEWAFYKKLESDSLKKFKAFADAGTVN 660 (1007)
Q Consensus 581 ~pi~~~~~~~~~~L~~~L~~~~lRRtk~~v~~g~~~~~LP~k~~~~v~v~ls~~er~lY~~l~~~~~~~~~~~~~~g~~~ 660 (1007)
.+...........|+.+|++|++||+|.+|.. .|||+.+.++.|.|++.|+++|..+.......+. .+
T Consensus 361 ~~~~~~~~e~i~~L~~~L~pf~LRR~KsdV~~-----~LPpK~e~iv~v~LS~~Qk~lY~~ll~k~~~~l~----~g--- 428 (1033)
T PLN03142 361 ISGENDQQEVVQQLHKVLRPFLLRRLKSDVEK-----GLPPKKETILKVGMSQMQKQYYKALLQKDLDVVN----AG--- 428 (1033)
T ss_pred cccccchHHHHHHHHHHhhHHHhhhhHHHHhh-----hCCCceeEEEeeCCCHHHHHHHHHHHHHHHHHHh----cc---
Confidence 76555556678899999999999999999875 7999999999999999999999998775544332 12
Q ss_pred ccHHHHHHHHHHHHhhcCcccccccccccccccchHHHhhcCChHHHHHHHhhcccccccccccCCCCCCccccccCccc
Q 001840 661 QNYANILLMLLRLRQACDHPLLVKEYDFDSVGKISGEMAKRLPRDMLIDLLSRLETSSAICCVCSDPPEDSVVTMCGHVF 740 (1007)
Q Consensus 661 ~~~~~il~~L~rLRq~~~hP~L~~~~~~~~~~~~~~e~~~~~~~~~~~~ll~~le~~~~~C~~c~d~~~~~v~t~CgH~~ 740 (1007)
.....++.++++||++|+||.|+....... +..+
T Consensus 429 ~~~~~LlnilmqLRk~cnHP~L~~~~ep~~----------------------------------------~~~~------ 462 (1033)
T PLN03142 429 GERKRLLNIAMQLRKCCNHPYLFQGAEPGP----------------------------------------PYTT------ 462 (1033)
T ss_pred ccHHHHHHHHHHHHHHhCCHHhhhcccccC----------------------------------------cccc------
Confidence 234567889999999999999864311000 0000
Q ss_pred chhhhhhhccCCCCCCCCcchhhcccccceecccccccccCCCCCCCCCCCcccccCCCcCcccchhhHHHHHHHHHhhh
Q 001840 741 CYQCASEYITGDDNMCPAPRCKEQLGADVVFSKTTLKNCVSDDGGGSPTDSPFADKSGILDNEYISSKIRTVLDILHTQC 820 (1007)
Q Consensus 741 c~~ci~~~~~~~~~~cp~~~cr~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SsKl~~l~~lL~~~~ 820 (1007)
.......|+|+..|..+|..+.
T Consensus 463 ----------------------------------------------------------~e~lie~SgKl~lLdkLL~~Lk 484 (1033)
T PLN03142 463 ----------------------------------------------------------GEHLVENSGKMVLLDKLLPKLK 484 (1033)
T ss_pred ----------------------------------------------------------hhHHhhhhhHHHHHHHHHHHHH
Confidence 0000124889999999998887
Q ss_pred hcccccchhhhhhcccCCCCCccccCCCCCCCCeEEEEecchhHHHHHHHHHhhcCCeEEEecCCCChHHHHHHHHhhcc
Q 001840 821 ELNTKCSIVEIHDLAGSNGSSAVHSKSPIEGPIKSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNT 900 (1007)
Q Consensus 821 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvIIFsq~~~~ld~L~~~L~~~gi~~~~i~Gs~s~~~R~~~I~~F~~ 900 (1007)
..+. ||||||||+.++++|+..|...|+.|++|+|+++..+|+++|+.|++
T Consensus 485 ~~g~-----------------------------KVLIFSQft~~LdiLed~L~~~g~~y~rIdGsts~~eRq~~Id~Fn~ 535 (1033)
T PLN03142 485 ERDS-----------------------------RVLIFSQMTRLLDILEDYLMYRGYQYCRIDGNTGGEDRDASIDAFNK 535 (1033)
T ss_pred hcCC-----------------------------eEEeehhHHHHHHHHHHHHHHcCCcEEEECCCCCHHHHHHHHHHhcc
Confidence 7666 99999999999999999999999999999999999999999999997
Q ss_pred Cc-ccceeeeeccCcccccccccCCEEEEecCCCCCChhHHHhHhhhccCCcccEEEEEEEeCCCHHHHHHHHHHHHHHH
Q 001840 901 DR-EITVMLMSLKAGNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVEDRILKLQDDKRKM 979 (1007)
Q Consensus 901 ~~-~~~VlLlStkagg~GLNL~~A~~VI~~Dp~WNp~~e~QaigRi~RiGQ~k~V~VyrLi~~~TIEe~I~~lq~~K~~l 979 (1007)
++ ...|||+|++|||+||||+.|++||+||+||||+.+.||+||+|||||+++|+||+|+++|||||+|++++..|..+
T Consensus 536 ~~s~~~VfLLSTrAGGlGINLt~Ad~VIiyD~dWNP~~d~QAidRaHRIGQkk~V~VyRLIt~gTIEEkIlera~~Kl~L 615 (1033)
T PLN03142 536 PGSEKFVFLLSTRAGGLGINLATADIVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLAL 615 (1033)
T ss_pred ccCCceEEEEeccccccCCchhhCCEEEEeCCCCChHHHHHHHHHhhhcCCCceEEEEEEEeCCcHHHHHHHHHHHHHHH
Confidence 54 56799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCCCCCCccCCCCHHHHHhhhc
Q 001840 980 VASAFGEDQGGGTASRLTVEDLRYLFM 1006 (1007)
Q Consensus 980 i~~~~g~~~~~~~~~~~t~edl~~lf~ 1006 (1007)
...+++.+.... ...++.+||..||.
T Consensus 616 d~~Vi~~g~~~~-~~~~~~~eL~~ll~ 641 (1033)
T PLN03142 616 DALVIQQGRLAE-QKTVNKDELLQMVR 641 (1033)
T ss_pred HHHHHhcCcccc-cccCCHHHHHHHHH
Confidence 999997643211 25678899988874
No 8
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=100.00 E-value=4.2e-83 Score=759.47 Aligned_cols=567 Identities=46% Similarity=0.729 Sum_probs=490.7
Q ss_pred hhHHHHHHHHhcCCCCccCCCCCCcccccCchHHHHHHHHHHHhhhcCCCccCceeecCCCCchHHHHHHHHHhhccccc
Q 001840 246 ERLIYQAALEDLNQPKVEATLPDGLLSVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQS 325 (1007)
Q Consensus 246 ~~~~~~~~~~~l~~~~~~~~~P~~~~~~~LrpyQ~~~v~wml~~e~~~~~~~GGILADdmGLGKTiqaIali~~~~~~~~ 325 (1007)
.+.+|.++...+.+...+...|.+.+.++ |+....||+........++||||||+||+|||+++|++++..+....
T Consensus 106 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~p----~~~~~~~~~~~~~~~~~~~ggIladd~glgkt~~ti~l~l~~~~~~~ 181 (674)
T KOG1001|consen 106 NLPIFKAAKWEIILYKANKISPKNTLRFP----LKQKYRWSLLKSREQQSLRGGILADDMGLGKTVKTIALILKQKLKSK 181 (674)
T ss_pred cchhhhhhhhhhhhhhhhccCCcccccCC----HHHHHHHHhhcccccCccccceEeeccccchHHHHHHHHHhcccCCc
Confidence 45566766666555555556666644554 77777777777766677899999999999999999999988654310
Q ss_pred cchhhhccccccccccCCCCCCCCCcCcccccccCCCCCCCCCCcccccccccCCCCCCCceEEEcChhhHHHHHHHHHH
Q 001840 326 KSKTEVLGNQKTEALNLDDDDDNGNAGLDKVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPASVLRQWARELED 405 (1007)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tLIV~P~sLl~QW~~Ei~k 405 (1007)
+ .......+.+|||||.+++.||..|+ .
T Consensus 182 ------------~---------------------------------------~~~~~~~kttLivcp~s~~~qW~~el-e 209 (674)
T KOG1001|consen 182 ------------E---------------------------------------EDRQKEFKTTLIVCPTSLLTQWKTEL-E 209 (674)
T ss_pred ------------c---------------------------------------hhhccccCceeEecchHHHHHHHHHH-h
Confidence 0 00124567799999999999999999 5
Q ss_pred HcCCCCCeEEEEEeCCCCCCCccccCCCcEEEechhhhhccCCCCCCCchhhhhhhcCcccCCcchhhhhhhhccccccc
Q 001840 406 KVPDKAALSVLIYHGGSRTKDPVELAKYDVVLTTYSIVTNEVPKQPSVDEEEADEKNGETYGLSSEFSVNKKRKKISNVS 485 (1007)
Q Consensus 406 ~~~~~~~l~vlv~~g~~r~~~~~~l~~~dVVItSy~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~ 485 (1007)
.......+.+++||| |.++...+..||||||||.++.+
T Consensus 210 k~~~~~~l~v~v~~g--r~kd~~el~~~dVVltTy~il~~---------------------------------------- 247 (674)
T KOG1001|consen 210 KVTEEDKLSIYVYHG--RTKDKSELNSYDVVLTTYDILKN---------------------------------------- 247 (674)
T ss_pred ccCCccceEEEEecc--cccccchhcCCceEEeeHHHhhc----------------------------------------
Confidence 556666999999999 88899999999999999999874
Q ss_pred ccccCCCCCCCCCCcccCCCCccccceeEEEEccCcccCCcccHHHHHHHhcccCcEEEEeccCCCCChhHHHHHHHHHh
Q 001840 486 KRGKKGKKGNVNSSIDYGCGPLAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRFLK 565 (1007)
Q Consensus 486 k~~~~~~k~~~~~~~~~~~~~L~~~~w~rVIlDEAH~iKN~~s~~~kal~~L~a~~r~lLTGTPi~N~l~DL~sll~fL~ 565 (1007)
++|..+.|.|||+||||+|+|.+++.+++++.|.+.+||||||||+||+++|+|++++|+.
T Consensus 248 -------------------~~l~~i~w~Riildea~~ikn~~tq~~~a~~~L~a~~RWcLtgtPiqn~~~~lysl~~fl~ 308 (674)
T KOG1001|consen 248 -------------------SPLVKIKWLRIVLDEAHTIKNKDTQIFKAVCQLDAKYRWCLTGTPIQNNLDELYSLFKFLE 308 (674)
T ss_pred -------------------ccccceeEEEEEeccccccCCcchHhhhhheeeccceeeeecCChhhhhHHHHHHHHHHhh
Confidence 2477899999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcchhHHHHHHcccCcccCc-hhHHHHHHHHHHHhhhhcccCcccCCCccccCCCceEEEEEecCCHHHHHHHHHHHH
Q 001840 566 YDPYAVYKSFYSTIKIPISRNS-LHGYKKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEWAFYKKLES 644 (1007)
Q Consensus 566 ~~~~~~~~~F~~~~~~pi~~~~-~~~~~~L~~~L~~~~lRRtk~~v~~g~~~~~LP~k~~~~v~v~ls~~er~lY~~l~~ 644 (1007)
.+||..+..|...+..|+.++. .+++..++.+|+.+++||+|....+|.|++.|||+++.+..++++.+++.+|..+..
T Consensus 309 ~~p~~~~~~~~~~i~~p~~~~~~~~~~k~l~~~L~~v~lrrtK~~~~~gk~i~~lppk~v~~~~~~~~~~e~~~y~~l~~ 388 (674)
T KOG1001|consen 309 IHPYCDQNYFKLLIQDPDERNKYKEGVKTLQGILKKVMLRRTKEMEVDGKPILELPPKTVFVTEVDLSKSERSAYKALKA 388 (674)
T ss_pred cCCchhhHHHHHHhcChhhhhhHHHHHHHHHHHHHHHHhcccccccccCccccccCcceeEeeeccccHhHHHHHHHHhh
Confidence 9999999999999999999988 789999999999999999999988899999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCCcccHHHHHHHHHHHHhhcCcccccccccccccccchHHHhhcCChHHHHHHHhhccccccccccc
Q 001840 645 DSLKKFKAFADAGTVNQNYANILLMLLRLRQACDHPLLVKEYDFDSVGKISGEMAKRLPRDMLIDLLSRLETSSAICCVC 724 (1007)
Q Consensus 645 ~~~~~~~~~~~~g~~~~~~~~il~~L~rLRq~~~hP~L~~~~~~~~~~~~~~e~~~~~~~~~~~~ll~~le~~~~~C~~c 724 (1007)
..+.++..+...+++..+|..++..+++|||+|+||.++............. ......+..++..+ ..|.+|
T Consensus 389 ~~~~~~~~~~~~~~~~~~Y~~~l~~lLrlrq~c~h~~lv~~~~~~~~~~~~~-------~~~~~~~i~~l~~~-~~c~ic 460 (674)
T KOG1001|consen 389 NSRNQFSNYANEGTVSSTYAFFLKNLLRLRQACDHSLLVMYEMDSLGDSGSA-------AALIIRLIVDLSVS-HWCHIC 460 (674)
T ss_pred hhhhHHHHHhhhchhhhhHHHHHHHHHHHHHHccchHhhhhhhhcccccccc-------chHHHHHHHHHhhc-cccccc
Confidence 9999999999999999999999999999999999999987543222211111 11111255556555 899999
Q ss_pred CCCCCCccccccCcccchhhhhhhccCCCCCCCCcchhhcccccceecccccccccCCCCCCCCCCCcccccCCCcCccc
Q 001840 725 SDPPEDSVVTMCGHVFCYQCASEYITGDDNMCPAPRCKEQLGADVVFSKTTLKNCVSDDGGGSPTDSPFADKSGILDNEY 804 (1007)
Q Consensus 725 ~d~~~~~v~t~CgH~~c~~ci~~~~~~~~~~cp~~~cr~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 804 (1007)
.+ ++.++++.|+|.||.+|+...+...... |++.|+..+.....++...+..+..... .
T Consensus 461 ~~-~~~~~it~c~h~~c~~c~~~~i~~~~~~-~~~~cr~~l~~~~l~s~~~~~~~~~~~~-------------------~ 519 (674)
T KOG1001|consen 461 CD-LDSFFITRCGHDFCVECLKKSIQQSENA-PCPLCRNVLKEKKLLSANPLPSIINDLL-------------------P 519 (674)
T ss_pred cc-cccceeecccchHHHHHHHhccccccCC-CCcHHHHHHHHHHHhhcccccchhhhcc-------------------c
Confidence 99 8999999999999999999999887766 7889999999888877666554433200 0
Q ss_pred chhhHHHHHHHHHhhhhcccccchhhhhhcccCCCCCccccCCCCCCCCeEEEEecchhHHHHHHHHHhhcCCeEEEecC
Q 001840 805 ISSKIRTVLDILHTQCELNTKCSIVEIHDLAGSNGSSAVHSKSPIEGPIKSIVFSQWTRMLDLVENSLNQHCIQYRRLDG 884 (1007)
Q Consensus 805 ~SsKl~~l~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvIIFsq~~~~ld~L~~~L~~~gi~~~~i~G 884 (1007)
.|.|+.+++.+|..... ++ . .|+||||||+.++++++..|...++.+.+++|
T Consensus 520 ~s~ki~~~~~~l~~~~~-------------------------s~--~-~kiiifsq~~~~l~l~~~~l~~~~~~~~~~~g 571 (674)
T KOG1001|consen 520 ESSKIYAFLKILQAKEM-------------------------SE--Q-PKIVIFSQLIWGLALVCLRLFFKGFVFLRYDG 571 (674)
T ss_pred hhhhhHHHHHHHhhccC-------------------------CC--C-CceeeehhHHHHHHHhhhhhhhcccccchhhh
Confidence 69999999999982111 01 1 19999999999999999999999999999999
Q ss_pred CCChHHHHHHHHhhccCcccceeeeeccCcccccccccCCEEEEecCCCCCChhHHHhHhhhccCCcccEEEEEEEeCCC
Q 001840 885 TMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDT 964 (1007)
Q Consensus 885 s~s~~~R~~~I~~F~~~~~~~VlLlStkagg~GLNL~~A~~VI~~Dp~WNp~~e~QaigRi~RiGQ~k~V~VyrLi~~~T 964 (1007)
.|+..+|.+.+..|..++.++|+++|++|||.||||+.|+|||++||||||+.|+|||+|+||+||+++|.|++|++++|
T Consensus 572 ~~~~~~r~~s~~~~~~~~~~~vll~Slkag~~glnlt~a~~v~~~d~~wnp~~eeQaidR~hrigq~k~v~v~r~~i~dt 651 (674)
T KOG1001|consen 572 EMLMKIRTKSFTDFPCDPLVTALLMSLKAGKVGLNLTAASHVLLMDPWWNPAVEEQAIDRAHRIGQTKPVKVSRFIIKDT 651 (674)
T ss_pred hhHHHHHHhhhcccccCccHHHHHHHHHHhhhhhchhhhhHHHhhchhcChHHHHHHHHHHHHhcccceeeeeeehhhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcC
Q 001840 965 VEDRILKLQDDKRKMVASAFGE 986 (1007)
Q Consensus 965 IEe~I~~lq~~K~~li~~~~g~ 986 (1007)
|||+|+++|++|+.++..++|+
T Consensus 652 veer~l~iq~~K~~~~~~a~~~ 673 (674)
T KOG1001|consen 652 VEERILKIQEKKREYNASAFGE 673 (674)
T ss_pred cHHHHHHHHHHHHHHHhhhccC
Confidence 9999999999999999999986
No 9
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=100.00 E-value=2.2e-82 Score=734.43 Aligned_cols=582 Identities=30% Similarity=0.458 Sum_probs=425.1
Q ss_pred cCCCCCCcccccCchHHHHHHHHHHHhhhcCCCccCceeecCCCCchHHHHHHHHHhhccccccchhhhccccccccccC
Q 001840 263 EATLPDGLLSVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNL 342 (1007)
Q Consensus 263 ~~~~P~~~~~~~LrpyQ~~~v~wml~~e~~~~~~~GGILADdmGLGKTiqaIali~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (1007)
...+|- ++...||.||+.||.||..+..+.+ .||||||||||||||+|+|++++.+.
T Consensus 605 ktpvPs-LLrGqLReYQkiGLdWLatLYeknl---NGILADEmGLGKTIQtISllAhLACe------------------- 661 (1958)
T KOG0391|consen 605 KTPVPS-LLRGQLREYQKIGLDWLATLYEKNL---NGILADEMGLGKTIQTISLLAHLACE------------------- 661 (1958)
T ss_pred ccCchH-HHHHHHHHHHHhhHHHHHHHHHhcc---cceehhhhcccchhHHHHHHHHHHhc-------------------
Confidence 344443 5688899999999999999988765 49999999999999999999886543
Q ss_pred CCCCCCCCcCcccccccCCCCCCCCCCcccccccccCCCCCCCceEEEcChhhHHHHHHHHHHHcCCCCCeEEEEEeCCC
Q 001840 343 DDDDDNGNAGLDKVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPASVLRQWARELEDKVPDKAALSVLIYHGGS 422 (1007)
Q Consensus 343 ~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tLIV~P~sLl~QW~~Ei~k~~~~~~~l~vlv~~g~~ 422 (1007)
...+++.|||||.+++.||+-||++||+ .++++.|+|+.
T Consensus 662 --------------------------------------egnWGPHLIVVpTsviLnWEMElKRwcP---glKILTYyGs~ 700 (1958)
T KOG0391|consen 662 --------------------------------------EGNWGPHLIVVPTSVILNWEMELKRWCP---GLKILTYYGSH 700 (1958)
T ss_pred --------------------------------------ccCCCCceEEeechhhhhhhHHHhhhCC---cceEeeecCCH
Confidence 2566889999999999999999999999 79999999998
Q ss_pred CCCCc--ccc---CCCcEEEechhhhhccCCCCCCCchhhhhhhcCcccCCcchhhhhhhhcccccccccccCCCCCCCC
Q 001840 423 RTKDP--VEL---AKYDVVLTTYSIVTNEVPKQPSVDEEEADEKNGETYGLSSEFSVNKKRKKISNVSKRGKKGKKGNVN 497 (1007)
Q Consensus 423 r~~~~--~~l---~~~dVVItSy~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~k~~~~~~k~~~~ 497 (1007)
+.+.. ..+ .-|.|.||||..+..+...
T Consensus 701 kErkeKRqgW~kPnaFHVCItSYklv~qd~~A------------------------------------------------ 732 (1958)
T KOG0391|consen 701 KERKEKRQGWAKPNAFHVCITSYKLVFQDLTA------------------------------------------------ 732 (1958)
T ss_pred HHHHHHhhcccCCCeeEEeehhhHHHHhHHHH------------------------------------------------
Confidence 65432 223 4578999999998865322
Q ss_pred CCcccCCCCccccceeEEEEccCcccCCcccHHHHHHHhcccCcEEEEeccCCCCChhHHHHHHHHHhcCCcchhHHHHH
Q 001840 498 SSIDYGCGPLAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRFLKYDPYAVYKSFYS 577 (1007)
Q Consensus 498 ~~~~~~~~~L~~~~w~rVIlDEAH~iKN~~s~~~kal~~L~a~~r~lLTGTPi~N~l~DL~sll~fL~~~~~~~~~~F~~ 577 (1007)
|.+.+|.++||||||+|||.++++++++..+++.+|++|||||++|++.|||+|++||+|..|.+...|+.
T Consensus 733 ---------FkrkrWqyLvLDEaqnIKnfksqrWQAllnfnsqrRLLLtgTPLqNslmELWSLmhFLmP~~f~shd~fk~ 803 (1958)
T KOG0391|consen 733 ---------FKRKRWQYLVLDEAQNIKNFKSQRWQALLNFNSQRRLLLTGTPLQNSLMELWSLMHFLMPQTFASHDIFKP 803 (1958)
T ss_pred ---------HHhhccceeehhhhhhhcchhHHHHHHHhccchhheeeecCCchhhHHHHHHHHHHHhhchhhhhhhhHHH
Confidence 66778999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcccCcccC-------chhHHHHHHHHHHHhhhhcccCcccCCCccccCCCceEEEEEecCCHHHHHHHHHHHHHHHHHH
Q 001840 578 TIKIPISRN-------SLHGYKKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEWAFYKKLESDSLKKF 650 (1007)
Q Consensus 578 ~~~~pi~~~-------~~~~~~~L~~~L~~~~lRRtk~~v~~g~~~~~LP~k~~~~v~v~ls~~er~lY~~l~~~~~~~~ 650 (1007)
+|.+|+..- ......+|+.+|++|+|||+|.+|.+ .||.|.+++++|.||..||.+|+.+......+
T Consensus 804 wfsnPltgmiEgsqeyn~klV~RLHkVlrPfiLRRlK~dVEK-----QlpkKyEHvv~CrLSkRQR~LYDDfmsq~~TK- 877 (1958)
T KOG0391|consen 804 WFSNPLTGMIEGSQEYNHKLVIRLHKVLRPFILRRLKRDVEK-----QLPKKYEHVVKCRLSKRQRALYDDFMSQPGTK- 877 (1958)
T ss_pred HhcCcchhhcccchhhchHHHHHHHHHhHHHHHHHHHHHHHH-----hcchhhhhheeeehhhhHHHHHHHHhhccchh-
Confidence 999997532 22457899999999999999999987 89999999999999999999999886543221
Q ss_pred HHHhhcCCCcccHHHHHHHHHHHHhhcCccccccccccc-----------cc-----------------ccch-------
Q 001840 651 KAFADAGTVNQNYANILLMLLRLRQACDHPLLVKEYDFD-----------SV-----------------GKIS------- 695 (1007)
Q Consensus 651 ~~~~~~g~~~~~~~~il~~L~rLRq~~~hP~L~~~~~~~-----------~~-----------------~~~~------- 695 (1007)
......++.+++.+|++||++||||.|+.....- .. .+++
T Consensus 878 -----etLkSGhfmsVlnilmqLrKvCNHPnLfEpRpv~ssfV~e~l~~s~as~~~r~l~el~~k~p~~~~ls~~p~~~~ 952 (1958)
T KOG0391|consen 878 -----ETLKSGHFMSVLNILMQLRKVCNHPNLFEPRPVGSSFVAEPLEYSSASKITRHLAELLSKKPIPRKLSEEPSTSA 952 (1958)
T ss_pred -----hHhhcCchhHHHHHHHHHHHHcCCCCcCCCCCCCcccccCceeccccccchhhhhhhccCCCCchhhhcCCCccc
Confidence 1223457899999999999999999665331000 00 0000
Q ss_pred ---------------------------------------------------HH---------------------------
Q 001840 696 ---------------------------------------------------GE--------------------------- 697 (1007)
Q Consensus 696 ---------------------------------------------------~e--------------------------- 697 (1007)
++
T Consensus 953 vp~v~pas~~~sAspl~s~l~~ls~~~rPp~pt~~g~~F~~~aa~atsphteea~~~~v~r~~~~~~va~~q~r~lt~p~ 1032 (1958)
T KOG0391|consen 953 VPAVRPASAKLSASPLASALPQLSLRGRPPIPTFAGAPFQTSAASATSPHTEEASASSVARLPSGEVVAIAQLRSLTGPQ 1032 (1958)
T ss_pred ccccchhhhhhcccccccccccccCCCCCCCccccccccccchhcccCCccccccccchhcccchheeeccccccccCcH
Confidence 00
Q ss_pred -HhhcCC-------------------------------------------------------------------------
Q 001840 698 -MAKRLP------------------------------------------------------------------------- 703 (1007)
Q Consensus 698 -~~~~~~------------------------------------------------------------------------- 703 (1007)
+..+..
T Consensus 1033 ~~veq~n~~k~~~htt~~~p~~~~~svl~~~sv~t~pl~~ap~p~~~~l~~a~gsr~pv~~ddpa~ltp~sg~pkl~gta 1112 (1958)
T KOG0391|consen 1033 SRVEQPNTPKTLQHTTAGQPLQLQGSVLQIVSVPTQPLLRAPGPVVMALHGALGSRPPVGGDDPAPLTPQSGVPKLVGTA 1112 (1958)
T ss_pred hHhhcCCCceeeeeecccCccccccceeeeccccccccccCCCCcceecchhhccCCCCCCCCccccccccCCCCCcchh
Confidence 000000
Q ss_pred ----------------hH---HHHHHHhhccc-c-----cccccccCCCC-----------CCccccccCc-ccchhhhh
Q 001840 704 ----------------RD---MLIDLLSRLET-S-----SAICCVCSDPP-----------EDSVVTMCGH-VFCYQCAS 746 (1007)
Q Consensus 704 ----------------~~---~~~~ll~~le~-~-----~~~C~~c~d~~-----------~~~v~t~CgH-~~c~~ci~ 746 (1007)
.+ .+...+.++.. . ...-.+|.-+. ...+++.|-- ..|..-|.
T Consensus 1113 t~~~g~~pr~~~~klee~Rkrql~erl~ri~~~~APvyg~e~l~~c~lp~e~i~p~~~ea~~e~~l~~~r~le~l~~iId 1192 (1958)
T KOG0391|consen 1113 TLAVGEPPRAIGGKLEEERKRQLKERLDRIYLVNAPVYGRELLRICALPSEGIVPWRSEAPSELMLTLCRCLESLQDIID 1192 (1958)
T ss_pred hhccCCCccccccchhhHHHHHHHHHHHHHhhccCcccchhhhhhhccchhhhccccccCchhhhhhHHHHHHHHHHHHH
Confidence 00 00000111100 0 00011221111 0112222211 01111111
Q ss_pred hhccCCCC-CCCCcchhhcccccceec-----ccccccccCCCCCC-CCCCCcccccCCCcCcccchhhHHHHHHHHHhh
Q 001840 747 EYITGDDN-MCPAPRCKEQLGADVVFS-----KTTLKNCVSDDGGG-SPTDSPFADKSGILDNEYISSKIRTVLDILHTQ 819 (1007)
Q Consensus 747 ~~~~~~~~-~cp~~~cr~~l~~~~~~~-----~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~SsKl~~l~~lL~~~ 819 (1007)
.+.-...+ ..+.+.|+..-....+-. ...+.......... ....+....-....-..|...|++.|.-+|+++
T Consensus 1193 rfafv~ppvva~ppslra~~ppp~~~~r~r~~~~qlrsel~p~~~~~q~~~~r~lqFPelrLiqyDcGKLQtLAiLLqQL 1272 (1958)
T KOG0391|consen 1193 RFAFVIPPVVAAPPSLRAPRPPPLYSHRMRILRQQLRSELAPYFQQRQTTAPRLLQFPELRLIQYDCGKLQTLAILLQQL 1272 (1958)
T ss_pred HheeecccccCCChhhcCCCCCcccchHHHHHHHHHHHHhccccchhhccchhhhcCcchheeecccchHHHHHHHHHHH
Confidence 11110000 111122222111110000 00000000000000 000000011111222357899999999999999
Q ss_pred hhcccccchhhhhhcccCCCCCccccCCCCCCCCeEEEEecchhHHHHHHHHHhhcCCeEEEecCCCChHHHHHHHHhhc
Q 001840 820 CELNTKCSIVEIHDLAGSNGSSAVHSKSPIEGPIKSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFN 899 (1007)
Q Consensus 820 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvIIFsq~~~~ld~L~~~L~~~gi~~~~i~Gs~s~~~R~~~I~~F~ 899 (1007)
...|+ ++|||+|.+.|||+|+.+|.-+|+.|+||||+++.++|+.+.++||
T Consensus 1273 k~egh-----------------------------RvLIfTQMtkmLDVLeqFLnyHgylY~RLDg~t~vEqRQaLmerFN 1323 (1958)
T KOG0391|consen 1273 KSEGH-----------------------------RVLIFTQMTKMLDVLEQFLNYHGYLYVRLDGNTSVEQRQALMERFN 1323 (1958)
T ss_pred HhcCc-----------------------------eEEehhHHHHHHHHHHHHHhhcceEEEEecCCccHHHHHHHHHHhc
Confidence 99888 9999999999999999999999999999999999999999999999
Q ss_pred cCcccceeeeeccCcccccccccCCEEEEecCCCCCChhHHHhHhhhccCCcccEEEEEEEeCCCHHHHHHHHHHHHHHH
Q 001840 900 TDREITVMLMSLKAGNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVEDRILKLQDDKRKM 979 (1007)
Q Consensus 900 ~~~~~~VlLlStkagg~GLNL~~A~~VI~~Dp~WNp~~e~QaigRi~RiGQ~k~V~VyrLi~~~TIEe~I~~lq~~K~~l 979 (1007)
.|+.+++||+||++||+|+||+.|++|||||-+|||....||-+|||||||+|+|+|||||.+.||||+|++....|+.+
T Consensus 1324 aD~RIfcfILSTrSggvGiNLtgADTVvFYDsDwNPtMDaQAQDrChRIGqtRDVHIYRLISe~TIEeniLkkanqKr~L 1403 (1958)
T KOG0391|consen 1324 ADRRIFCFILSTRSGGVGINLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDVHIYRLISERTIEENILKKANQKRML 1403 (1958)
T ss_pred CCCceEEEEEeccCCccccccccCceEEEecCCCCchhhhHHHHHHHhhcCccceEEEEeeccchHHHHHHhhhhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHHhhcCCCCCCccCCCCHHHHHhhhcC
Q 001840 980 VASAFGEDQGGGTASRLTVEDLRYLFMV 1007 (1007)
Q Consensus 980 i~~~~g~~~~~~~~~~~t~edl~~lf~~ 1007 (1007)
-+-++.++. -...-++..++++||++
T Consensus 1404 ~evaiqggd--fTt~ff~q~ti~dLFd~ 1429 (1958)
T KOG0391|consen 1404 DEVAIQGGD--FTTAFFKQRTIRDLFDV 1429 (1958)
T ss_pred HHHhhccCC--ccHHHHhhhhHHHHhcC
Confidence 888876532 22345677788888875
No 10
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=100.00 E-value=6.3e-78 Score=711.92 Aligned_cols=480 Identities=29% Similarity=0.492 Sum_probs=402.7
Q ss_pred CCCCcccccCchHHHHHHHHHHHhhhcCCCccCceeecCCCCchHHHHHHHHHhhccccccchhhhccccccccccCCCC
Q 001840 266 LPDGLLSVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLDDD 345 (1007)
Q Consensus 266 ~P~~~~~~~LrpyQ~~~v~wml~~e~~~~~~~GGILADdmGLGKTiqaIali~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (1007)
+|.-..+..||.||++||+||+...-.. ..||||||||||||||+|+++.+....
T Consensus 362 qp~~~~g~~LRdyQLeGlNWl~~~W~~~---~n~ILADEmgLgktvqti~fl~~l~~~---------------------- 416 (1373)
T KOG0384|consen 362 QPEYKGGNELRDYQLEGLNWLLYSWYKR---NNCILADEMGLGKTVQTITFLSYLFHS---------------------- 416 (1373)
T ss_pred CccccccchhhhhhcccchhHHHHHHhc---ccceehhhcCCCcchHHHHHHHHHHHh----------------------
Confidence 4544556789999999999999766543 458999999999999999999775432
Q ss_pred CCCCCcCcccccccCCCCCCCCCCcccccccccCCCCCCCceEEEcChhhHHHHHHHHHHHcCCCCCeEEEEEeCCCCCC
Q 001840 346 DDNGNAGLDKVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTK 425 (1007)
Q Consensus 346 ~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tLIV~P~sLl~QW~~Ei~k~~~~~~~l~vlv~~g~~r~~ 425 (1007)
....+|+|||||.|.+.+|++||..|. .+++++|+|....+
T Consensus 417 -----------------------------------~~~~gpflvvvplst~~~W~~ef~~w~----~mn~i~y~g~~~sr 457 (1373)
T KOG0384|consen 417 -----------------------------------LQIHGPFLVVVPLSTITAWEREFETWT----DMNVIVYHGNLESR 457 (1373)
T ss_pred -----------------------------------hhccCCeEEEeehhhhHHHHHHHHHHh----hhceeeeecchhHH
Confidence 134578999999999999999999998 49999999987554
Q ss_pred Cc-----------cccCCCcEEEechhhhhccCCCCCCCchhhhhhhcCcccCCcchhhhhhhhcccccccccccCCCCC
Q 001840 426 DP-----------VELAKYDVVLTTYSIVTNEVPKQPSVDEEEADEKNGETYGLSSEFSVNKKRKKISNVSKRGKKGKKG 494 (1007)
Q Consensus 426 ~~-----------~~l~~~dVVItSy~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~k~~~~~~k~ 494 (1007)
.. ...-+++++||||+++-++.
T Consensus 458 ~~i~~ye~~~~~~~~~lkf~~lltTye~~LkDk----------------------------------------------- 490 (1373)
T KOG0384|consen 458 QLIRQYEFYHSSNTKKLKFNALLTTYEIVLKDK----------------------------------------------- 490 (1373)
T ss_pred HHHHHHHheecCCccccccceeehhhHHHhccH-----------------------------------------------
Confidence 22 12236899999999997653
Q ss_pred CCCCCcccCCCCccccceeEEEEccCcccCCcccHHHHHHHhcccCcEEEEeccCCCCChhHHHHHHHHHhcCCcchhHH
Q 001840 495 NVNSSIDYGCGPLAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRFLKYDPYAVYKS 574 (1007)
Q Consensus 495 ~~~~~~~~~~~~L~~~~w~rVIlDEAH~iKN~~s~~~kal~~L~a~~r~lLTGTPi~N~l~DL~sll~fL~~~~~~~~~~ 574 (1007)
..|..+.|..++|||||++||..++.+..+..++..+|+++||||+||++.|||+|++||.|+.|..+..
T Consensus 491 ----------~~L~~i~w~~~~vDeahrLkN~~~~l~~~l~~f~~~~rllitgTPlQNsikEL~sLl~Fl~P~kf~~~~~ 560 (1373)
T KOG0384|consen 491 ----------AELSKIPWRYLLVDEAHRLKNDESKLYESLNQFKMNHRLLITGTPLQNSLKELWSLLHFLMPGKFDSWDE 560 (1373)
T ss_pred ----------hhhccCCcceeeecHHhhcCchHHHHHHHHHHhcccceeeecCCCccccHHHHHHHhcccCCCCCCcHHH
Confidence 2388999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcccCcccCchhHHHHHHHHHHHhhhhcccCcccCCCccccCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHHHh
Q 001840 575 FYSTIKIPISRNSLHGYKKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEWAFYKKLESDSLKKFKAFA 654 (1007)
Q Consensus 575 F~~~~~~pi~~~~~~~~~~L~~~L~~~~lRRtk~~v~~g~~~~~LP~k~~~~v~v~ls~~er~lY~~l~~~~~~~~~~~~ 654 (1007)
|...+ .......+..|+..|+|+||||.|++|.+ .||++.+.++.|+||..|.++|+.++..-...+.
T Consensus 561 f~~~~----~~~~e~~~~~L~~~L~P~~lRr~kkdvek-----slp~k~E~IlrVels~lQk~yYk~ILtkN~~~Lt--- 628 (1373)
T KOG0384|consen 561 FLEEF----DEETEEQVRKLQQILKPFLLRRLKKDVEK-----SLPPKEETILRVELSDLQKQYYKAILTKNFSALT--- 628 (1373)
T ss_pred HHHhh----cchhHHHHHHHHHHhhHHHHHHHHhhhcc-----CCCCCcceEEEeehhHHHHHHHHHHHHhhHHHHh---
Confidence 98887 33455788999999999999999999987 8999999999999999999999999886554332
Q ss_pred hcCCCcccHHHHHHHHHHHHhhcCcccccccccccccccchHHHhhcCChHHHHHHHhhcccccccccccCCCCCCcccc
Q 001840 655 DAGTVNQNYANILLMLLRLRQACDHPLLVKEYDFDSVGKISGEMAKRLPRDMLIDLLSRLETSSAICCVCSDPPEDSVVT 734 (1007)
Q Consensus 655 ~~g~~~~~~~~il~~L~rLRq~~~hP~L~~~~~~~~~~~~~~e~~~~~~~~~~~~ll~~le~~~~~C~~c~d~~~~~v~t 734 (1007)
.|.... ..++|..++-||++|+||+|+.+......+.... ....+.+.
T Consensus 629 -KG~~g~-~~~lLNimmELkKccNHpyLi~gaee~~~~~~~~----~~~d~~L~-------------------------- 676 (1373)
T KOG0384|consen 629 -KGAKGS-TPSLLNIMMELKKCCNHPYLIKGAEEKILGDFRD----KMRDEALQ-------------------------- 676 (1373)
T ss_pred -ccCCCC-CchHHHHHHHHHHhcCCccccCcHHHHHHHhhhh----cchHHHHH--------------------------
Confidence 233333 3789999999999999999998643221111100 00000000
Q ss_pred ccCcccchhhhhhhccCCCCCCCCcchhhcccccceecccccccccCCCCCCCCCCCcccccCCCcCcccchhhHHHHHH
Q 001840 735 MCGHVFCYQCASEYITGDDNMCPAPRCKEQLGADVVFSKTTLKNCVSDDGGGSPTDSPFADKSGILDNEYISSKIRTVLD 814 (1007)
Q Consensus 735 ~CgH~~c~~ci~~~~~~~~~~cp~~~cr~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SsKl~~l~~ 814 (1007)
.....|+|+-.|-.
T Consensus 677 ------------------------------------------------------------------~lI~sSGKlVLLDK 690 (1373)
T KOG0384|consen 677 ------------------------------------------------------------------ALIQSSGKLVLLDK 690 (1373)
T ss_pred ------------------------------------------------------------------HHHHhcCcEEeHHH
Confidence 00124789988888
Q ss_pred HHHhhhhcccccchhhhhhcccCCCCCccccCCCCCCCCeEEEEecchhHHHHHHHHHhhcCCeEEEecCCCChHHHHHH
Q 001840 815 ILHTQCELNTKCSIVEIHDLAGSNGSSAVHSKSPIEGPIKSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRA 894 (1007)
Q Consensus 815 lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvIIFsq~~~~ld~L~~~L~~~gi~~~~i~Gs~s~~~R~~~ 894 (1007)
+|-.+.+.|+ |||||||.+.|||+|+++|..++++|-||||++..+.|+++
T Consensus 691 LL~rLk~~GH-----------------------------rVLIFSQMVRmLDIL~eYL~~r~ypfQRLDGsvrgelRq~A 741 (1373)
T KOG0384|consen 691 LLPRLKEGGH-----------------------------RVLIFSQMVRMLDILAEYLSLRGYPFQRLDGSVRGELRQQA 741 (1373)
T ss_pred HHHHHhcCCc-----------------------------eEEEhHHHHHHHHHHHHHHHHcCCcceeccCCcchHHHHHH
Confidence 9999888887 99999999999999999999999999999999999999999
Q ss_pred HHhhccC-cccceeeeeccCcccccccccCCEEEEecCCCCCChhHHHhHhhhccCCcccEEEEEEEeCCCHHHHHHHHH
Q 001840 895 VKDFNTD-REITVMLMSLKAGNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVEDRILKLQ 973 (1007)
Q Consensus 895 I~~F~~~-~~~~VlLlStkagg~GLNL~~A~~VI~~Dp~WNp~~e~QaigRi~RiGQ~k~V~VyrLi~~~TIEe~I~~lq 973 (1007)
|+.||.. ++-+|||+||+|||.||||+.|++||+||..|||....||..|||||||++.|.|||||+++|||+.|+++.
T Consensus 742 IDhFnap~SddFvFLLSTRAGGLGINLatADTVIIFDSDWNPQNDLQAqARaHRIGQkk~VnVYRLVTk~TvEeEilERA 821 (1373)
T KOG0384|consen 742 IDHFNAPDSDDFVFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAQARAHRIGQKKHVNVYRLVTKNTVEEEILERA 821 (1373)
T ss_pred HHhccCCCCCceEEEEecccCcccccccccceEEEeCCCCCcchHHHHHHHHHhhcccceEEEEEEecCCchHHHHHHHH
Confidence 9999974 567899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCCC---CCccCCCCHHHHHhhh
Q 001840 974 DDKRKMVASAFGEDQG---GGTASRLTVEDLRYLF 1005 (1007)
Q Consensus 974 ~~K~~li~~~~g~~~~---~~~~~~~t~edl~~lf 1005 (1007)
.+|.-|-..++..... ......++.+||-+|+
T Consensus 822 k~KmvLD~aVIQ~m~t~~~~s~~~~f~K~ELsaIL 856 (1373)
T KOG0384|consen 822 KLKMVLDHAVIQRMDTKGKTSKSNPFSKEELSAIL 856 (1373)
T ss_pred HHHhhhHHHHHHhhccccccCCCCCCCHHHHHHHH
Confidence 9998877777643321 1223668888888775
No 11
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Probab=100.00 E-value=2.5e-75 Score=651.35 Aligned_cols=544 Identities=28% Similarity=0.436 Sum_probs=400.0
Q ss_pred CcccccCchHHHHHHHHHHHhhhcCCCccCceeecCCCCchHHHHHHHHHhhccccccchhhhccccccccccCCCCCCC
Q 001840 269 GLLSVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLDDDDDN 348 (1007)
Q Consensus 269 ~~~~~~LrpyQ~~~v~wml~~e~~~~~~~GGILADdmGLGKTiqaIali~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (1007)
.++.++|+.||+.|++|+......+. .||||||||||||+|+|++++++...
T Consensus 562 kil~ctLKEYQlkGLnWLvnlYdqGi---NGILADeMGLGKTVQsisvlAhLaE~------------------------- 613 (1185)
T KOG0388|consen 562 KILKCTLKEYQLKGLNWLVNLYDQGI---NGILADEMGLGKTVQSISVLAHLAET------------------------- 613 (1185)
T ss_pred hhhhhhhHHHhhccHHHHHHHHHccc---cceehhhhccchhHHHHHHHHHHHHh-------------------------
Confidence 35688999999999999999887654 59999999999999999999875432
Q ss_pred CCcCcccccccCCCCCCCCCCcccccccccCCCCCCCceEEEcChhhHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCc-
Q 001840 349 GNAGLDKVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDP- 427 (1007)
Q Consensus 349 ~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tLIV~P~sLl~QW~~Ei~k~~~~~~~l~vlv~~g~~r~~~~- 427 (1007)
..-.+|+|||+|+|+|.||++||.+|+| .++++-|-|+...+..
T Consensus 614 --------------------------------~nIwGPFLVVtpaStL~NWaqEisrFlP---~~k~lpywGs~~eRkiL 658 (1185)
T KOG0388|consen 614 --------------------------------HNIWGPFLVVTPASTLHNWAQEISRFLP---SFKVLPYWGSPSERKIL 658 (1185)
T ss_pred --------------------------------ccCCCceEEeehHHHHhHHHHHHHHhCc---cceeecCcCChhhhHHH
Confidence 1335789999999999999999999999 8999999998754421
Q ss_pred ----------cccCCCcEEEechhhhhccCCCCCCCchhhhhhhcCcccCCcchhhhhhhhcccccccccccCCCCCCCC
Q 001840 428 ----------VELAKYDVVLTTYSIVTNEVPKQPSVDEEEADEKNGETYGLSSEFSVNKKRKKISNVSKRGKKGKKGNVN 497 (1007)
Q Consensus 428 ----------~~l~~~dVVItSy~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~k~~~~~~k~~~~ 497 (1007)
...+.++||||||.++-.+..
T Consensus 659 rKfw~rKnmY~rna~fhVviTSYQlvVtDek------------------------------------------------- 689 (1185)
T KOG0388|consen 659 RKFWNRKNMYRRNAPFHVVITSYQLVVTDEK------------------------------------------------- 689 (1185)
T ss_pred HHhcchhhhhccCCCceEEEEeeeeeechHH-------------------------------------------------
Confidence 134678999999998875421
Q ss_pred CCcccCCCCccccceeEEEEccCcccCCcccHHHHHHHhcccCcEEEEeccCCCCChhHHHHHHHHHhcCCcchhHHHHH
Q 001840 498 SSIDYGCGPLAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRFLKYDPYAVYKSFYS 577 (1007)
Q Consensus 498 ~~~~~~~~~L~~~~w~rVIlDEAH~iKN~~s~~~kal~~L~a~~r~lLTGTPi~N~l~DL~sll~fL~~~~~~~~~~F~~ 577 (1007)
-|.++.|.++|||||+.||...|.+++.+..++++.|++||||||||+..|||.||+|++|..|++..+|.+
T Consensus 690 --------y~qkvKWQYMILDEAQAIKSSsS~RWKtLLsF~cRNRLLLTGTPIQNsMqELWALLHFIMPsLFDshneFse 761 (1185)
T KOG0388|consen 690 --------YLQKVKWQYMILDEAQAIKSSSSSRWKTLLSFKCRNRLLLTGTPIQNSMQELWALLHFIMPSLFDSHNEFSE 761 (1185)
T ss_pred --------HHHhhhhhheehhHHHHhhhhhhhHHHHHhhhhccceeeecCCccchHHHHHHHHHHHHhhHhhhchHHHHH
Confidence 277889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcccCcccC-------chhHHHHHHHHHHHhhhhcccCcccCCCccccCCCceEEEEEecCCHHHHHHHHHHHHHHHHHH
Q 001840 578 TIKIPISRN-------SLHGYKKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEWAFYKKLESDSLKKF 650 (1007)
Q Consensus 578 ~~~~pi~~~-------~~~~~~~L~~~L~~~~lRRtk~~v~~g~~~~~LP~k~~~~v~v~ls~~er~lY~~l~~~~~~~~ 650 (1007)
+|.+-|+.. ..+.+++|+.+|+||||||.|++|.. +|-.+++..++|+|+..|..+|+.+......
T Consensus 762 WFSKdIEshAe~~~tlneqqL~RLH~ILKPFMLRRvKkdV~s-----ELg~Kteidv~CdLs~RQ~~lYq~ik~~iS~-- 834 (1185)
T KOG0388|consen 762 WFSKDIESHAEMNTTLNEQQLQRLHAILKPFMLRRVKKDVIS-----ELGQKTEIDVYCDLSYRQKVLYQEIKRSISS-- 834 (1185)
T ss_pred HHhhhhHhHHHhcCCcCHHHHHHHHHHHhHHHHHHHHHHHHH-----HhccceEEEEEechhHHHHHHHHHHHHHhhH--
Confidence 998877543 34678999999999999999999975 8999999999999999999999987553321
Q ss_pred HHHhhcCCCcccHHHHHHHHHHHHhhcCccccccccccccc-----ccchHH--------HhhcCChHHHHHHHhh----
Q 001840 651 KAFADAGTVNQNYANILLMLLRLRQACDHPLLVKEYDFDSV-----GKISGE--------MAKRLPRDMLIDLLSR---- 713 (1007)
Q Consensus 651 ~~~~~~g~~~~~~~~il~~L~rLRq~~~hP~L~~~~~~~~~-----~~~~~e--------~~~~~~~~~~~~ll~~---- 713 (1007)
.....++++||++|+||.|+........ ...... +.-++++....++++.
T Consensus 835 -------------~E~~~~vmQlrKVCNHPdLFer~e~~s~L~~~V~~nl~dv~S~Grnpi~ykiP~L~~~d~le~~~fn 901 (1185)
T KOG0388|consen 835 -------------MEMENLVMQLRKVCNHPDLFERLEPRSGLSLEVSDNLGDVVSFGRNPIDYKIPSLVAKDALEMFRFN 901 (1185)
T ss_pred -------------HHHHHHHHHHHHhcCChHHHhhcCCcceeEEEcccCHHHHHhCCCCceeecchHHHHHHHHHHHHHh
Confidence 2223478999999999999876433221 100011 1111121111111110
Q ss_pred -ccccccccccc----CCCCC---Cc--cccccCcc-cch-----hhhhh-hccC--------------------CCCCC
Q 001840 714 -LETSSAICCVC----SDPPE---DS--VVTMCGHV-FCY-----QCASE-YITG--------------------DDNMC 756 (1007)
Q Consensus 714 -le~~~~~C~~c----~d~~~---~~--v~t~CgH~-~c~-----~ci~~-~~~~--------------------~~~~c 756 (1007)
.+.....|.+- .+++. .+ +...-|.. |.. ..+.. .+.- .-.+|
T Consensus 902 iye~i~~~~g~~~~v~Geg~~~w~~~l~~e~k~G~~~~~n~e~~~Kavtr~ll~p~~~~~e~~~rvi~~e~~~L~~~~y~ 981 (1185)
T KOG0388|consen 902 IYEMIERINGLRRIVNGEGPNAWYLRLSLEFKYGGYVFRNVEEAGKAVTRNLLNPESSLLESMRRVIDEEAYRLQRHVYC 981 (1185)
T ss_pred HHHHHHHHhhhHhhhcCCCcchhcccceeeeccCCcccccHHHHHHHHHHHhcCcccchhHHHHHHhhHHHHHhhhheee
Confidence 00001111110 01110 00 00000110 000 00000 0000 00111
Q ss_pred CCcchhhcccccceecccccccccCCCCCCCCCCCcccccCCCcCcccchhhHHHHHHHHHhhhhcccccchhhhhhccc
Q 001840 757 PAPRCKEQLGADVVFSKTTLKNCVSDDGGGSPTDSPFADKSGILDNEYISSKIRTVLDILHTQCELNTKCSIVEIHDLAG 836 (1007)
Q Consensus 757 p~~~cr~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SsKl~~l~~lL~~~~~~~~~~~~~~~~~~~~ 836 (1007)
-.|..+.+.. .+-...++.++..+....+.... .. ..-...-...|+|+..|-++|..+...++
T Consensus 982 y~P~v~apPv--LI~~ead~PeId~E~~~~pLn~~-i~-~Ppm~~FitdSgKL~~LDeLL~kLkaegH------------ 1045 (1185)
T KOG0388|consen 982 YSPVVAAPPV--LISNEADLPEIDLENRHIPLNTT-IY-VPPMNTFITDSGKLVVLDELLPKLKAEGH------------ 1045 (1185)
T ss_pred eccccCCCCe--eeecccCCCCCCccccCcccccc-ee-cCcHHhhhccccceeeHHHHHHHhhcCCc------------
Confidence 1111111100 00000111111111100000000 00 00001113478999999999999998887
Q ss_pred CCCCCccccCCCCCCCCeEEEEecchhHHHHHHHHHhhcCCeEEEecCCCChHHHHHHHHhhccCcccceeeeeccCccc
Q 001840 837 SNGSSAVHSKSPIEGPIKSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNL 916 (1007)
Q Consensus 837 ~~~~~~~~~~~~~~~~~KvIIFsq~~~~ld~L~~~L~~~gi~~~~i~Gs~s~~~R~~~I~~F~~~~~~~VlLlStkagg~ 916 (1007)
++|+|.|.|.|+++++++|..+|+.|.++||+....+|..+|.+|+. ++++|||+||+|||.
T Consensus 1046 -----------------RvL~yfQMTkM~dl~EdYl~yr~Y~ylRLDGSsk~~dRrd~vrDwQ~-sdiFvFLLSTRAGGL 1107 (1185)
T KOG0388|consen 1046 -----------------RVLMYFQMTKMIDLIEDYLVYRGYTYLRLDGSSKASDRRDVVRDWQA-SDIFVFLLSTRAGGL 1107 (1185)
T ss_pred -----------------eEEehhHHHHHHHHHHHHHHhhccceEEecCcchhhHHHHHHhhccC-CceEEEEEecccCcc
Confidence 99999999999999999999999999999999999999999999998 799999999999999
Q ss_pred ccccccCCEEEEecCCCCCChhHHHhHhhhccCCcccEEEEEEEeCCCHHHHHHHHHHHHHHHHHHhhcC
Q 001840 917 GLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVEDRILKLQDDKRKMVASAFGE 986 (1007)
Q Consensus 917 GLNL~~A~~VI~~Dp~WNp~~e~QaigRi~RiGQ~k~V~VyrLi~~~TIEe~I~~lq~~K~~li~~~~g~ 986 (1007)
||||++|++|||||..|||....||++|+||+||+++|+||||++++||||+|+.+...|......++-+
T Consensus 1108 GINLTAADTViFYdSDWNPT~D~QAMDRAHRLGQTrdvtvyrl~~rgTvEEk~l~rA~qK~~vQq~Vm~G 1177 (1185)
T KOG0388|consen 1108 GINLTAADTVIFYDSDWNPTADQQAMDRAHRLGQTRDVTVYRLITRGTVEEKVLERANQKDEVQQMVMHG 1177 (1185)
T ss_pred cccccccceEEEecCCCCcchhhHHHHHHHhccCccceeeeeecccccHHHHHHHHhhhHHHHHHHHHcC
Confidence 9999999999999999999999999999999999999999999999999999999999999888888754
No 12
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=100.00 E-value=1.4e-70 Score=646.31 Aligned_cols=492 Identities=27% Similarity=0.386 Sum_probs=391.1
Q ss_pred CcccccCchHHHHHHHHHHHhhhcC---CCccCceeecCCCCchHHHHHHHHHhhccccccchhhhccccccccccCCCC
Q 001840 269 GLLSVNLLKHQKIALAWMLQKETRS---LHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLDDD 345 (1007)
Q Consensus 269 ~~~~~~LrpyQ~~~v~wml~~e~~~---~~~~GGILADdmGLGKTiqaIali~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (1007)
..++..|||||++|+.||+...... ....|||+||+||+|||+|+|++|.......
T Consensus 233 P~l~~~LrPHQ~EG~~FL~knl~g~~~~~~~~GCImAd~~GlGKTlq~IsflwtlLrq~--------------------- 291 (776)
T KOG0390|consen 233 PLLKKILRPHQREGFEFLYKNLAGLIRPKNSGGCIMADEPGLGKTLQCISFIWTLLRQF--------------------- 291 (776)
T ss_pred ccHhhhcCchHHHHHHHHHhhhhcccccCCCCceEeeCCCCcchHHHHHHHHHHHHHhC---------------------
Confidence 3456779999999999999876654 1567999999999999999999998754430
Q ss_pred CCCCCcCcccccccCCCCCCCCCCcccccccccCCCCCCCceEEEcChhhHHHHHHHHHHHcCCCCCeEEEEEeCCCCCC
Q 001840 346 DDNGNAGLDKVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTK 425 (1007)
Q Consensus 346 ~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tLIV~P~sLl~QW~~Ei~k~~~~~~~l~vlv~~g~~r~~ 425 (1007)
| ...+.+...|||||.+|+.+|.+||.+|..+. .+..+.++|.....
T Consensus 292 -----------------------P---------~~~~~~~k~lVV~P~sLv~nWkkEF~KWl~~~-~i~~l~~~~~~~~~ 338 (776)
T KOG0390|consen 292 -----------------------P---------QAKPLINKPLVVAPSSLVNNWKKEFGKWLGNH-RINPLDFYSTKKSS 338 (776)
T ss_pred -----------------------c---------CccccccccEEEccHHHHHHHHHHHHHhcccc-ccceeeeecccchh
Confidence 0 01123466899999999999999999998853 68888888887641
Q ss_pred ---------CccccCCCcEEEechhhhhccCCCCCCCchhhhhhhcCcccCCcchhhhhhhhcccccccccccCCCCCCC
Q 001840 426 ---------DPVELAKYDVVLTTYSIVTNEVPKQPSVDEEEADEKNGETYGLSSEFSVNKKRKKISNVSKRGKKGKKGNV 496 (1007)
Q Consensus 426 ---------~~~~l~~~dVVItSy~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~k~~~~~~k~~~ 496 (1007)
.....-.+-|.|.||+++...+..
T Consensus 339 w~~~~sil~~~~~~~~~~vli~sye~~~~~~~~----------------------------------------------- 371 (776)
T KOG0390|consen 339 WIKLKSILFLGYKQFTTPVLIISYETASDYCRK----------------------------------------------- 371 (776)
T ss_pred hhhhHHHHHhhhhheeEEEEeccHHHHHHHHHH-----------------------------------------------
Confidence 011123456889999998753211
Q ss_pred CCCcccCCCCccccceeEEEEccCcccCCcccHHHHHHHhcccCcEEEEeccCCCCChhHHHHHHHHHhcCCcchhHHHH
Q 001840 497 NSSIDYGCGPLAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRFLKYDPYAVYKSFY 576 (1007)
Q Consensus 497 ~~~~~~~~~~L~~~~w~rVIlDEAH~iKN~~s~~~kal~~L~a~~r~lLTGTPi~N~l~DL~sll~fL~~~~~~~~~~F~ 576 (1007)
+....+++||+||+|+.||..+.+++++..|+..+|++|||||+||++.|+|++++|.+|+.++....|.
T Consensus 372 ----------il~~~~glLVcDEGHrlkN~~s~~~kaL~~l~t~rRVLLSGTp~QNdl~EyFnlL~fvrP~~Lgs~~sf~ 441 (776)
T KOG0390|consen 372 ----------ILLIRPGLLVCDEGHRLKNSDSLTLKALSSLKTPRRVLLTGTPIQNDLKEYFNLLDFVRPGFLGSISSFK 441 (776)
T ss_pred ----------HhcCCCCeEEECCCCCccchhhHHHHHHHhcCCCceEEeeCCcccccHHHHHHHHhhcChhhccchHHHH
Confidence 5566789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcccCcccCch-----------hHHHHHHHHHHHhhhhcccCcccCCCccccCCCceEEEEEecCCHHHHHHHHHHHHH
Q 001840 577 STIKIPISRNSL-----------HGYKKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEWAFYKKLESD 645 (1007)
Q Consensus 577 ~~~~~pi~~~~~-----------~~~~~L~~~L~~~~lRRtk~~v~~g~~~~~LP~k~~~~v~v~ls~~er~lY~~l~~~ 645 (1007)
..+..|+.+... ...+.|+.+...|++||+-....+ .||++.++++.|.+++.|..+|..+...
T Consensus 442 k~~~~~i~~~~~~~~s~e~~~~~~rl~eL~~~t~~fi~rrt~~il~k-----~LP~k~e~vv~~n~t~~Q~~~~~~l~~~ 516 (776)
T KOG0390|consen 442 KKFEIPILRGRDADASEEDREREERLQELRELTNKFILRRTGDILLK-----YLPGKYEYVVFCNPTPIQKELYKKLLDS 516 (776)
T ss_pred HHhhcccccccCCCcchhhhhhHHHHHHHHHHHHhheeecccchhhh-----hCCCceeEEEEeCCcHHHHHHHHHHHHH
Confidence 999999865322 236779999999999999965554 8999999999999999999999998775
Q ss_pred HHHHHHHHhhcCCCcccHHHHHHHHHHHHhhcCcccccccccccccccchHHHhhcCChHHHHHHHhhcccccccccccC
Q 001840 646 SLKKFKAFADAGTVNQNYANILLMLLRLRQACDHPLLVKEYDFDSVGKISGEMAKRLPRDMLIDLLSRLETSSAICCVCS 725 (1007)
Q Consensus 646 ~~~~~~~~~~~g~~~~~~~~il~~L~rLRq~~~hP~L~~~~~~~~~~~~~~e~~~~~~~~~~~~ll~~le~~~~~C~~c~ 725 (1007)
. .. ..+. ...|..++.|.++|+||.|+.-.......
T Consensus 517 ~-~~-~~~~---------~~~l~~~~~L~k~cnhP~L~~~~~~~~~e--------------------------------- 552 (776)
T KOG0390|consen 517 M-KM-RTLK---------GYALELITKLKKLCNHPSLLLLCEKTEKE--------------------------------- 552 (776)
T ss_pred H-Hh-hhhh---------cchhhHHHHHHHHhcCHHhhccccccccc---------------------------------
Confidence 4 11 1110 11577889999999999987410000000
Q ss_pred CCCCCccccccCcccchhhhhhhccCCCCCCCCcchhhcccccceecccccccccCCCCCCCCCCCcccccCCCcCcccc
Q 001840 726 DPPEDSVVTMCGHVFCYQCASEYITGDDNMCPAPRCKEQLGADVVFSKTTLKNCVSDDGGGSPTDSPFADKSGILDNEYI 805 (1007)
Q Consensus 726 d~~~~~v~t~CgH~~c~~ci~~~~~~~~~~cp~~~cr~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 (1007)
...+....+-. .............
T Consensus 553 ------------------------------------------~~~~~~~~~~~--------------~~~~~~~~~~~~k 576 (776)
T KOG0390|consen 553 ------------------------------------------KAFKNPALLLD--------------PGKLKLDAGDGSK 576 (776)
T ss_pred ------------------------------------------ccccChHhhhc--------------ccccccccccchh
Confidence 00000000000 0000000111225
Q ss_pred hhhHHHHHHHHHhhhhcccccchhhhhhcccCCCCCccccCCCCCCCCeEEEEecchhHHHHHHHHHhhcCCeEEEecCC
Q 001840 806 SSKIRTVLDILHTQCELNTKCSIVEIHDLAGSNGSSAVHSKSPIEGPIKSIVFSQWTRMLDLVENSLNQHCIQYRRLDGT 885 (1007)
Q Consensus 806 SsKl~~l~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvIIFsq~~~~ld~L~~~L~~~gi~~~~i~Gs 885 (1007)
|.|+..|+.++....+.. .+|+++.++++.++++++..++-+|+.++++||+
T Consensus 577 s~kl~~L~~ll~~~~ek~----------------------------~~~~v~Isny~~tldl~e~~~~~~g~~~~rLdG~ 628 (776)
T KOG0390|consen 577 SGKLLVLVFLLEVIREKL----------------------------LVKSVLISNYTQTLDLFEQLCRWRGYEVLRLDGK 628 (776)
T ss_pred hhHHHHHHHHHHHHhhhc----------------------------ceEEEEeccHHHHHHHHHHHHhhcCceEEEEcCC
Confidence 889988888885554432 2488999999999999999999999999999999
Q ss_pred CChHHHHHHHHhhccCccc-ceeeeeccCcccccccccCCEEEEecCCCCCChhHHHhHhhhccCCcccEEEEEEEeCCC
Q 001840 886 MSLPARDRAVKDFNTDREI-TVMLMSLKAGNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDT 964 (1007)
Q Consensus 886 ~s~~~R~~~I~~F~~~~~~-~VlLlStkagg~GLNL~~A~~VI~~Dp~WNp~~e~QaigRi~RiGQ~k~V~VyrLi~~~T 964 (1007)
|+..+|+.+|+.||+.++. +|||+|++|||+||||.+|++||+||+.|||+...||++||||.||+|+|+||||++.||
T Consensus 629 ~~~~qRq~~vd~FN~p~~~~~vfLlSsKAgg~GinLiGAsRlil~D~dWNPa~d~QAmaR~~RdGQKk~v~iYrLlatGt 708 (776)
T KOG0390|consen 629 TSIKQRQKLVDTFNDPESPSFVFLLSSKAGGEGLNLIGASRLILFDPDWNPAVDQQAMARAWRDGQKKPVYIYRLLATGT 708 (776)
T ss_pred CchHHHHHHHHhccCCCCCceEEEEecccccCceeecccceEEEeCCCCCchhHHHHHHHhccCCCcceEEEEEeecCCC
Confidence 9999999999999987655 999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCCCccCCCCHHHHHhhhc
Q 001840 965 VEDRILKLQDDKRKMVASAFGEDQGGGTASRLTVEDLRYLFM 1006 (1007)
Q Consensus 965 IEe~I~~lq~~K~~li~~~~g~~~~~~~~~~~t~edl~~lf~ 1006 (1007)
+||+||.+|-.|..+-..+|+.+.... .....++++.||.
T Consensus 709 iEEk~~qrq~~K~~lS~~v~~~~~~~~--~~~~~~~~~~lf~ 748 (776)
T KOG0390|consen 709 IEEKIYQRQTHKEGLSSMVFDEEEDVE--KHFFTEDLKTLFD 748 (776)
T ss_pred chHHHHHHHHHhhhhhheEEecccccc--cccchHHHHHHHh
Confidence 999999999999999999998765422 3344488888885
No 13
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=100.00 E-value=1.3e-71 Score=647.10 Aligned_cols=462 Identities=31% Similarity=0.496 Sum_probs=395.1
Q ss_pred CCCCCCcccccCchHHHHHHHHHHHhhhcCCCccCceeecCCCCchHHHHHHHHHhhccccccchhhhccccccccccCC
Q 001840 264 ATLPDGLLSVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLD 343 (1007)
Q Consensus 264 ~~~P~~~~~~~LrpyQ~~~v~wml~~e~~~~~~~GGILADdmGLGKTiqaIali~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (1007)
..+|..+...+|++||+.||.||+.+.+..+ .||||||||||||||+|++|.+....
T Consensus 384 ~~Qps~l~GG~Lk~YQl~GLqWmVSLyNNnL---NGILADEMGLGKTIQtIsLitYLmE~-------------------- 440 (1157)
T KOG0386|consen 384 AKQPSSLQGGELKEYQLHGLQWMVSLYNNNL---NGILADEMGLGKTIQTISLITYLMEH-------------------- 440 (1157)
T ss_pred ccCcchhcCCCCchhhhhhhHHHhhccCCCc---ccccchhcccchHHHHHHHHHHHHHH--------------------
Confidence 4567777788999999999999999988765 49999999999999999999886543
Q ss_pred CCCCCCCcCcccccccCCCCCCCCCCcccccccccCCCCCCCceEEEcChhhHHHHHHHHHHHcCCCCCeEEEEEeCCCC
Q 001840 344 DDDDNGNAGLDKVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSR 423 (1007)
Q Consensus 344 ~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tLIV~P~sLl~QW~~Ei~k~~~~~~~l~vlv~~g~~r 423 (1007)
+...+|.|||||.++|.+|..||.+|.| .+..++|.|+..
T Consensus 441 -------------------------------------K~~~GP~LvivPlstL~NW~~Ef~kWaP---Sv~~i~YkGtp~ 480 (1157)
T KOG0386|consen 441 -------------------------------------KQMQGPFLIIVPLSTLVNWSSEFPKWAP---SVQKIQYKGTPQ 480 (1157)
T ss_pred -------------------------------------cccCCCeEEeccccccCCchhhcccccc---ceeeeeeeCCHH
Confidence 2445779999999999999999999998 799999999875
Q ss_pred CCCc----cccCCCcEEEechhhhhccCCCCCCCchhhhhhhcCcccCCcchhhhhhhhcccccccccccCCCCCCCCCC
Q 001840 424 TKDP----VELAKYDVVLTTYSIVTNEVPKQPSVDEEEADEKNGETYGLSSEFSVNKKRKKISNVSKRGKKGKKGNVNSS 499 (1007)
Q Consensus 424 ~~~~----~~l~~~dVVItSy~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~k~~~~~~k~~~~~~ 499 (1007)
.+.. ....+++|++|||+.+.++-
T Consensus 481 ~R~~l~~qir~gKFnVLlTtyEyiikdk---------------------------------------------------- 508 (1157)
T KOG0386|consen 481 QRSGLTKQQRHGKFNVLLTTYEYIIKDK---------------------------------------------------- 508 (1157)
T ss_pred HHhhHHHHHhcccceeeeeeHHHhcCCH----------------------------------------------------
Confidence 5432 23488999999999987631
Q ss_pred cccCCCCccccceeEEEEccCcccCCcccHHHHHHH-hcccCcEEEEeccCCCCChhHHHHHHHHHhcCCcchhHHHHHH
Q 001840 500 IDYGCGPLAKVGWFRVVLDEAQTIKNHRTQVARACC-SLRAKRRWCLSGTPIQNSIDDLYSYFRFLKYDPYAVYKSFYST 578 (1007)
Q Consensus 500 ~~~~~~~L~~~~w~rVIlDEAH~iKN~~s~~~kal~-~L~a~~r~lLTGTPi~N~l~DL~sll~fL~~~~~~~~~~F~~~ 578 (1007)
..|.++.|..+||||+|++||..++++..+. ...+.+|++|||||+||++.|||+||+||-|..|.+...|..+
T Consensus 509 -----~lLsKI~W~yMIIDEGHRmKNa~~KLt~~L~t~y~~q~RLLLTGTPLQN~LpELWaLLNFlLP~IFnS~~~FeqW 583 (1157)
T KOG0386|consen 509 -----ALLSKISWKYMIIDEGHRMKNAICKLTDTLNTHYRAQRRLLLTGTPLQNNLPELWALLNFLLPNIFNSCKAFEQW 583 (1157)
T ss_pred -----HHHhccCCcceeecccccccchhhHHHHHhhccccchhhhhhcCChhhhccHHHHHHHHHhccchhhhHhHHHHH
Confidence 2388999999999999999999999998887 5689999999999999999999999999999999999999999
Q ss_pred cccCcccCch----------hHHHHHHHHHHHhhhhcccCcccCCCccccCCCceEEEEEecCCHHHHHHHHHHHHHHHH
Q 001840 579 IKIPISRNSL----------HGYKKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEWAFYKKLESDSLK 648 (1007)
Q Consensus 579 ~~~pi~~~~~----------~~~~~L~~~L~~~~lRRtk~~v~~g~~~~~LP~k~~~~v~v~ls~~er~lY~~l~~~~~~ 648 (1007)
|..|+..... -.+.+|+.+|+||++||.|++|.. .||.+++.++.|++|.-|+.+|..+.+.-+-
T Consensus 584 FN~PFantGek~eLteEEtlLIIrRLHkVLRPFlLRRlKkeVE~-----~LPdKve~viKC~mSalQq~lY~~m~~~g~l 658 (1157)
T KOG0386|consen 584 FNQPFANTGEKVELTEEETLLIIRRLHKVLRPFLLRRLKKEVEQ-----ELPDKVEDVIKCDMSALQQSLYKQMQNKGQL 658 (1157)
T ss_pred hhhhhhhcCCcccccchHHHHHHHHHHHhhhHHHHHhhhHHHhh-----hCchhhhHhhheehhhhhHhhhHHHHhCCCC
Confidence 9999865431 246799999999999999999986 8999999999999999999999877543211
Q ss_pred HHHHHhhcCCCcccHHHHHHHHHHHHhhcCcccccccccccccccchHHHhhcCChHHHHHHHhhcccccccccccCCCC
Q 001840 649 KFKAFADAGTVNQNYANILLMLLRLRQACDHPLLVKEYDFDSVGKISGEMAKRLPRDMLIDLLSRLETSSAICCVCSDPP 728 (1007)
Q Consensus 649 ~~~~~~~~g~~~~~~~~il~~L~rLRq~~~hP~L~~~~~~~~~~~~~~e~~~~~~~~~~~~ll~~le~~~~~C~~c~d~~ 728 (1007)
. .+.......+..+....+.||++|+||+++.+.... |..|.++
T Consensus 659 ~----~d~~~g~~g~k~L~N~imqLRKiCNHP~lf~~ve~~-------------------------------~~~~~~~- 702 (1157)
T KOG0386|consen 659 L----KDTAKGKKGYKPLFNTIMQLRKLCNHPYLFANVENS-------------------------------YTLHYDI- 702 (1157)
T ss_pred C----cCchhccccchhhhhHhHHHHHhcCCchhhhhhccc-------------------------------cccccCh-
Confidence 1 111123344667888999999999999997532110 0000000
Q ss_pred CCccccccCcccchhhhhhhccCCCCCCCCcchhhcccccceecccccccccCCCCCCCCCCCcccccCCCcCcccchhh
Q 001840 729 EDSVVTMCGHVFCYQCASEYITGDDNMCPAPRCKEQLGADVVFSKTTLKNCVSDDGGGSPTDSPFADKSGILDNEYISSK 808 (1007)
Q Consensus 729 ~~~v~t~CgH~~c~~ci~~~~~~~~~~cp~~~cr~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SsK 808 (1007)
.+.+..++|
T Consensus 703 -----------------------------------------------------------------------~dL~R~sGK 711 (1157)
T KOG0386|consen 703 -----------------------------------------------------------------------KDLVRVSGK 711 (1157)
T ss_pred -----------------------------------------------------------------------hHHHHhccH
Confidence 011224789
Q ss_pred HHHHHHHHHhhhhcccccchhhhhhcccCCCCCccccCCCCCCCCeEEEEecchhHHHHHHHHHhhcCCeEEEecCCCCh
Q 001840 809 IRTVLDILHTQCELNTKCSIVEIHDLAGSNGSSAVHSKSPIEGPIKSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSL 888 (1007)
Q Consensus 809 l~~l~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvIIFsq~~~~ld~L~~~L~~~gi~~~~i~Gs~s~ 888 (1007)
+..|-.+|-++.+.++ +|++|+|.|+++++++.+|.-.++.|.++||++..
T Consensus 712 fELLDRiLPKLkatgH-----------------------------RVLlF~qMTrlmdimEdyL~~~~~kYlRLDG~TK~ 762 (1157)
T KOG0386|consen 712 FELLDRILPKLKATGH-----------------------------RVLLFSQMTRLMDILEDYLQIREYKYLRLDGQTKV 762 (1157)
T ss_pred HHHHHhhhHHHHhcCc-----------------------------chhhHHHHHHHHHHHHHHHhhhhhheeeecCCcch
Confidence 9988889988888887 99999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcc-CcccceeeeeccCcccccccccCCEEEEecCCCCCChhHHHhHhhhccCCcccEEEEEEEeCCCHHH
Q 001840 889 PARDRAVKDFNT-DREITVMLMSLKAGNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVED 967 (1007)
Q Consensus 889 ~~R~~~I~~F~~-~~~~~VlLlStkagg~GLNL~~A~~VI~~Dp~WNp~~e~QaigRi~RiGQ~k~V~VyrLi~~~TIEe 967 (1007)
++|...++.||. +..+++||+|+++||.|||||.|++||+||..|||....||.+|+|||||+++|.|+|+++.++|||
T Consensus 763 ~eRg~ll~~FN~Pds~yf~FllstragglglNlQtadtviifdsdwnp~~d~qaqdrahrigq~~evRv~rl~tv~sveE 842 (1157)
T KOG0386|consen 763 EERGDLLEIFNAPDSPYFIFLLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKKEVRVLRLITVNSVEE 842 (1157)
T ss_pred hhHHHHHHHhcCCCCceeeeeeeecccccccchhhcceEEEecCCCCchhHHHHHHHHHHhhchhheeeeeeehhhHHHH
Confidence 999999999997 5578999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhcC
Q 001840 968 RILKLQDDKRKMVASAFGE 986 (1007)
Q Consensus 968 ~I~~lq~~K~~li~~~~g~ 986 (1007)
+|++.+..|.++-..++..
T Consensus 843 ~il~~a~~Kl~~d~kviqa 861 (1157)
T KOG0386|consen 843 KILAEAFYKLDVDGKVIQA 861 (1157)
T ss_pred HHHHHHHHhcCchHhhhhc
Confidence 9999999999888777754
No 14
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription]
Probab=100.00 E-value=2.5e-67 Score=600.95 Aligned_cols=577 Identities=26% Similarity=0.334 Sum_probs=398.2
Q ss_pred ccccCchHHHHHHHHHHHhhh------cCCCccCceeecCCCCchHHHHHHHHHhhccccccchhhhccccccccccCCC
Q 001840 271 LSVNLLKHQKIALAWMLQKET------RSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLDD 344 (1007)
Q Consensus 271 ~~~~LrpyQ~~~v~wml~~e~------~~~~~~GGILADdmGLGKTiqaIali~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (1007)
+...|+|||..||+||+...- ....+.|||||+-||||||+|+|+|+......
T Consensus 665 lv~kLKpHQv~GvqFMwd~~~eSlkr~~~~~GsGcILAHcMGLGKTlQVvtflhTvL~c--------------------- 723 (1567)
T KOG1015|consen 665 LVIKLKPHQVDGVQFMWDCCCESLKRTKKSPGSGCILAHCMGLGKTLQVVTFLHTVLLC--------------------- 723 (1567)
T ss_pred HHhhcCcccccchhHHHHHHHHHHHhhcCCCCcchHHHHhhcccceehhhHHHHHHHHh---------------------
Confidence 356799999999999986322 22346899999999999999999998663221
Q ss_pred CCCCCCcCcccccccCCCCCCCCCCcccccccccCCCCCCCceEEEcChhhHHHHHHHHHHHcCCCC---CeEEEEEeCC
Q 001840 345 DDDNGNAGLDKVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPASVLRQWARELEDKVPDKA---ALSVLIYHGG 421 (1007)
Q Consensus 345 ~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tLIV~P~sLl~QW~~Ei~k~~~~~~---~l~vlv~~g~ 421 (1007)
.+...+++|||||.+++.||.+||++|.+... .+.|..+...
T Consensus 724 -----------------------------------~klg~ktaLvV~PlNt~~NW~~EFekWm~~~e~~~~leV~eL~~v 768 (1567)
T KOG1015|consen 724 -----------------------------------DKLGFKTALVVCPLNTALNWMNEFEKWMEGLEDDEKLEVSELATV 768 (1567)
T ss_pred -----------------------------------hccCCceEEEEcchHHHHHHHHHHHHhcccccccccceeehhhhc
Confidence 12345679999999999999999999998421 3444444333
Q ss_pred CCCCCcc-----ccCCCcEEEechhhhhccCCCCCCCchhhhhhhcCcccCCcchhhhhhhhcccccccccccCCCCCCC
Q 001840 422 SRTKDPV-----ELAKYDVVLTTYSIVTNEVPKQPSVDEEEADEKNGETYGLSSEFSVNKKRKKISNVSKRGKKGKKGNV 496 (1007)
Q Consensus 422 ~r~~~~~-----~l~~~dVVItSy~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~k~~~~~~k~~~ 496 (1007)
++..+.. -..+-.|.|+-|+.+++-... ...+.+|....
T Consensus 769 kr~e~R~~~L~~W~~~ggVmIiGYdmyRnLa~g-----------------------r~vk~rk~ke~------------- 812 (1567)
T KOG1015|consen 769 KRPEERSYMLQRWQEDGGVMIIGYDMYRNLAQG-----------------------RNVKSRKLKEI------------- 812 (1567)
T ss_pred cChHHHHHHHHHHHhcCCEEEEehHHHHHHhcc-----------------------cchhhhHHHHH-------------
Confidence 3322111 124458999999998864211 00011110000
Q ss_pred CCCcccCCCCccccceeEEEEccCcccCCcccHHHHHHHhcccCcEEEEeccCCCCChhHHHHHHHHHhcCCcchhHHHH
Q 001840 497 NSSIDYGCGPLAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRFLKYDPYAVYKSFY 576 (1007)
Q Consensus 497 ~~~~~~~~~~L~~~~w~rVIlDEAH~iKN~~s~~~kal~~L~a~~r~lLTGTPi~N~l~DL~sll~fL~~~~~~~~~~F~ 576 (1007)
...-|..-.+++||+||||.|||..+.+++|+..+++++|++|||||+||++.|+|.|++|+++++++++.+|.
T Consensus 813 ------f~k~lvdpGPD~vVCDE~HiLKNeksa~Skam~~irtkRRI~LTGTPLQNNLmEY~CMVnFVKe~lLGs~~Efr 886 (1567)
T KOG1015|consen 813 ------FNKALVDPGPDFVVCDEGHILKNEKSAVSKAMNSIRTKRRIILTGTPLQNNLMEYHCMVNFVKENLLGSIKEFR 886 (1567)
T ss_pred ------HHHhccCCCCCeEEecchhhhccchHHHHHHHHHHHhheeEEeecCchhhhhHHHHHHHHhcccccccCcHHHH
Confidence 00125566789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcccCcccCch------------hHHHHHHHHHHHhhhhcccCcccCCCccccCCCceEEEEEecCCHHHHHHHHHHHH
Q 001840 577 STIKIPISRNSL------------HGYKKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEWAFYKKLES 644 (1007)
Q Consensus 577 ~~~~~pi~~~~~------------~~~~~L~~~L~~~~lRRtk~~v~~g~~~~~LP~k~~~~v~v~ls~~er~lY~~l~~ 644 (1007)
++|.+||.++.. .....|..+|+.++-|+....+.. .|||++++++.+.|++.|..+|+.++.
T Consensus 887 NRFvNpI~nGq~~dST~~DVr~Mk~RsHILye~LkgcVqRkDy~Vltk-----~LPPK~eyVi~vrltelQ~~LYq~yL~ 961 (1567)
T KOG1015|consen 887 NRFVNPIQNGQCADSTMVDVRVMKKRSHILYEMLKGCVQRKDYTVLTK-----FLPPKHEYVIAVRLTELQCKLYQYYLD 961 (1567)
T ss_pred HhhcCccccCccCCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcc-----cCCCceeEEEEEeccHHHHHHHHHHHh
Confidence 999999988753 234567889999998888776654 799999999999999999999998876
Q ss_pred HHHHHHHHHhhcCCCcccHHHHHHHHHHHHhhcCcccccccccccccccchHHHhhcCChHHHHHHHhhccccccccccc
Q 001840 645 DSLKKFKAFADAGTVNQNYANILLMLLRLRQACDHPLLVKEYDFDSVGKISGEMAKRLPRDMLIDLLSRLETSSAICCVC 724 (1007)
Q Consensus 645 ~~~~~~~~~~~~g~~~~~~~~il~~L~rLRq~~~hP~L~~~~~~~~~~~~~~e~~~~~~~~~~~~ll~~le~~~~~C~~c 724 (1007)
...... ..........+++|..+.-|+++..||..+.-.......+ +.+.. .+..-.+|
T Consensus 962 -h~~~~G--~d~eg~~g~~arlf~dfqmlsrIwtHP~~lqL~s~~~enk------R~~se------------ddm~~fi~ 1020 (1567)
T KOG1015|consen 962 -HLTGVG--NDSEGGRGAGARLFQDFQMLSRIWTHPWCLQLDSISKENK------RYFSE------------DDMDEFIA 1020 (1567)
T ss_pred -hccccC--CccccccchhhhHHHHHHHHHHHhcCCCceeechhhhhhc------ccccc------------cchhcccc
Confidence 221110 0000111245788999999999999997664322111100 00000 00111122
Q ss_pred CCCCCCccccccCcccchhhhhhhcc----------CCCC-----CCCCcchhhccccccee----cccccccccCCCCC
Q 001840 725 SDPPEDSVVTMCGHVFCYQCASEYIT----------GDDN-----MCPAPRCKEQLGADVVF----SKTTLKNCVSDDGG 785 (1007)
Q Consensus 725 ~d~~~~~v~t~CgH~~c~~ci~~~~~----------~~~~-----~cp~~~cr~~l~~~~~~----~~~~l~~~~~~~~~ 785 (1007)
.+..++-... -...+|..-...... ..+. ..+ ...|.-...+..- ....|. ...+-.+
T Consensus 1021 D~sde~e~s~-~s~d~~~~~ks~~~s~~Desss~~~~~g~~ev~k~k~-rk~r~~~~~~~~~~g~~~D~~l~-ll~dlag 1097 (1567)
T KOG1015|consen 1021 DDSDETEMSL-SSDDYTKKKKSGKKSKKDESSSGSGSDGDVEVIKVKN-RKSRGGGEGNVDETGNNPDVSLK-LLEDLAG 1097 (1567)
T ss_pred CCCccccccc-cccchhhcccccccccccccccccccCCchhhhhhhh-hhccccccCcccccCCCcchHHH-Hhhcccc
Confidence 2221110000 000011110000000 0000 000 0000000000000 000000 0000000
Q ss_pred CC--CCCCccc---c--cCCCcCcccchhhHHHHHHHHHhhhhcccccchhhhhhcccCCCCCccccCCCCCCCCeEEEE
Q 001840 786 GS--PTDSPFA---D--KSGILDNEYISSKIRTVLDILHTQCELNTKCSIVEIHDLAGSNGSSAVHSKSPIEGPIKSIVF 858 (1007)
Q Consensus 786 ~~--~~~~~~~---~--~~~~~~~~~~SsKl~~l~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvIIF 858 (1007)
.. +...+.+ + ..........|+|+-.|+++|+...+-|. |+|||
T Consensus 1098 ~~s~~~d~ppew~kd~v~e~d~~v~~~SgKmiLLleIL~mceeIGD-----------------------------KlLVF 1148 (1567)
T KOG1015|consen 1098 SSSNPSDPPPEWYKDFVTEADAEVLEHSGKMILLLEILRMCEEIGD-----------------------------KLLVF 1148 (1567)
T ss_pred cccCCCCCchHhHHhhhhhhhhhhhhcCcceehHHHHHHHHHHhcc-----------------------------eeEEe
Confidence 00 0011100 0 01112234479999999999999888877 99999
Q ss_pred ecchhHHHHHHHHHhhc----------------------CCeEEEecCCCChHHHHHHHHhhccCc--ccceeeeeccCc
Q 001840 859 SQWTRMLDLVENSLNQH----------------------CIQYRRLDGTMSLPARDRAVKDFNTDR--EITVMLMSLKAG 914 (1007)
Q Consensus 859 sq~~~~ld~L~~~L~~~----------------------gi~~~~i~Gs~s~~~R~~~I~~F~~~~--~~~VlLlStkag 914 (1007)
||...+|++|+.+|... |..|.+|||++...+|++..++||+.. ..++|||||+||
T Consensus 1149 SQSL~SLdLIe~fLe~v~r~gk~~~d~~~~~~~eGkW~~GkDyyriDGst~s~~R~k~~~~FNdp~NlRaRl~LISTRAG 1228 (1567)
T KOG1015|consen 1149 SQSLISLDLIEDFLELVSREGKEDKDKPLIYKGEGKWLRGKDYYRLDGSTTSQSRKKWAEEFNDPTNLRARLFLISTRAG 1228 (1567)
T ss_pred ecccchhHHHHHHHHhhcccCccccccccccccccceecCCceEEecCcccHHHHHHHHHHhcCcccceeEEEEEeeccC
Confidence 99999999999999742 578999999999999999999999743 567899999999
Q ss_pred ccccccccCCEEEEecCCCCCChhHHHhHhhhccCCcccEEEEEEEeCCCHHHHHHHHHHHHHHHHHHhhcCCCCCCccC
Q 001840 915 NLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVEDRILKLQDDKRKMVASAFGEDQGGGTAS 994 (1007)
Q Consensus 915 g~GLNL~~A~~VI~~Dp~WNp~~e~QaigRi~RiGQ~k~V~VyrLi~~~TIEe~I~~lq~~K~~li~~~~g~~~~~~~~~ 994 (1007)
+.|+||.+||+||+||-.|||+...|+|-|+||+||+|||+||||++.||+|++||++|..|+.+...++++.+.. .
T Consensus 1229 sLGiNLvAANRVIIfDasWNPSyDtQSIFRvyRfGQtKPvyiYRfiAqGTmEeKIYkRQVTKqsls~RVVDeqQv~---R 1305 (1567)
T KOG1015|consen 1229 SLGINLVAANRVIIFDASWNPSYDTQSIFRVYRFGQTKPVYIYRFIAQGTMEEKIYKRQVTKQSLSFRVVDEQQVE---R 1305 (1567)
T ss_pred ccccceeecceEEEEecccCCccchHHHHHHHhhcCcCceeehhhhhcccHHHHHHHHHHhHhhhhhhhhhHHHHH---H
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999887642 3
Q ss_pred CCCHHHHHhhhc
Q 001840 995 RLTVEDLRYLFM 1006 (1007)
Q Consensus 995 ~~t~edl~~lf~ 1006 (1007)
-.+.+||..||.
T Consensus 1306 hy~~neLteLy~ 1317 (1567)
T KOG1015|consen 1306 HYTMNELTELYT 1317 (1567)
T ss_pred HhhHhhhHHHhh
Confidence 478899998875
No 15
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=100.00 E-value=1.4e-62 Score=627.29 Aligned_cols=498 Identities=38% Similarity=0.576 Sum_probs=400.9
Q ss_pred cccccCchHHHHHHHHHH-HhhhcCCCccCceeecCCCCchHHHHHHHHHhhccccccchhhhccccccccccCCCCCCC
Q 001840 270 LLSVNLLKHQKIALAWML-QKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLDDDDDN 348 (1007)
Q Consensus 270 ~~~~~LrpyQ~~~v~wml-~~e~~~~~~~GGILADdmGLGKTiqaIali~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (1007)
.....|+|||..|+.||. .... ...|||||||||||||+|+|+++......
T Consensus 334 ~~~~~lr~yq~~g~~wl~~~l~~---~~~~~ilaD~mglGKTiq~i~~l~~~~~~------------------------- 385 (866)
T COG0553 334 DLSAELRPYQLEGVNWLSELLRS---NLLGGILADDMGLGKTVQTIALLLSLLES------------------------- 385 (866)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHh---ccCCCcccccccchhHHHHHHHHHhhhhc-------------------------
Confidence 346789999999999998 4443 24789999999999999999999762221
Q ss_pred CCcCcccccccCCCCCCCCCCcccccccccCCCCCCCceEEEcChhhHHHHHHHHHHHcCCCCCeE-EEEEeCCCCC---
Q 001840 349 GNAGLDKVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPASVLRQWARELEDKVPDKAALS-VLIYHGGSRT--- 424 (1007)
Q Consensus 349 ~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tLIV~P~sLl~QW~~Ei~k~~~~~~~l~-vlv~~g~~r~--- 424 (1007)
.....+++|||||.+++.||.+|+.+|.+ .++ +.+++|....
T Consensus 386 -------------------------------~~~~~~~~liv~p~s~~~nw~~e~~k~~~---~~~~~~~~~g~~~~~~~ 431 (866)
T COG0553 386 -------------------------------IKVYLGPALIVVPASLLSNWKREFEKFAP---DLRLVLVYHGEKSELDK 431 (866)
T ss_pred -------------------------------ccCCCCCeEEEecHHHHHHHHHHHhhhCc---cccceeeeeCCcccccH
Confidence 01224679999999999999999999988 577 9999998862
Q ss_pred --CCccccCC------CcEEEechhhhhccCCCCCCCchhhhhhhcCcccCCcchhhhhhhhcccccccccccCCCCCCC
Q 001840 425 --KDPVELAK------YDVVLTTYSIVTNEVPKQPSVDEEEADEKNGETYGLSSEFSVNKKRKKISNVSKRGKKGKKGNV 496 (1007)
Q Consensus 425 --~~~~~l~~------~dVVItSy~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~k~~~~~~k~~~ 496 (1007)
.....+.+ ++++||||..+....
T Consensus 432 ~~~~~~~~~~~~~~~~~~v~itty~~l~~~~------------------------------------------------- 462 (866)
T COG0553 432 KREALRDLLKLHLVIIFDVVITTYELLRRFL------------------------------------------------- 462 (866)
T ss_pred HHHHHHHHhhhcccceeeEEechHHHHHHhh-------------------------------------------------
Confidence 12222333 899999999998621
Q ss_pred CCCcccCCCCccccceeEEEEccCcccCCcccHHHHHHHhcccCcEEEEeccCCCCChhHHHHHHH-HHhcCCcc-hhHH
Q 001840 497 NSSIDYGCGPLAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFR-FLKYDPYA-VYKS 574 (1007)
Q Consensus 497 ~~~~~~~~~~L~~~~w~rVIlDEAH~iKN~~s~~~kal~~L~a~~r~lLTGTPi~N~l~DL~sll~-fL~~~~~~-~~~~ 574 (1007)
.+...+..+.|+++|+||||+|||..+..+++++.+++.++|+|||||++|++.|||++++ |+.|+.+. ....
T Consensus 463 -----~~~~~l~~~~~~~~v~DEa~~ikn~~s~~~~~l~~~~~~~~~~LtgTPlen~l~eL~sl~~~f~~p~~~~~~~~~ 537 (866)
T COG0553 463 -----VDHGGLKKIEWDRVVLDEAHRIKNDQSSEGKALQFLKALNRLDLTGTPLENRLGELWSLLQEFLNPGLLGTSFAI 537 (866)
T ss_pred -----hhHHHHhhceeeeeehhhHHHHhhhhhHHHHHHHHHhhcceeeCCCChHhhhHHHHHHHHHHHhCCccccchHHH
Confidence 0112377889999999999999999999999999999999999999999999999999999 99999999 6689
Q ss_pred HHHHcccCcccCch--------hHHHHHHHHHHHhhhhcccCc--ccCCCccccCCCceEEEEEecCCHHHHHHHHHHHH
Q 001840 575 FYSTIKIPISRNSL--------HGYKKLQAVLRAIMLRRTKGT--FIDGQPIINLPPKTISLTKVDFSKEEWAFYKKLES 644 (1007)
Q Consensus 575 F~~~~~~pi~~~~~--------~~~~~L~~~L~~~~lRRtk~~--v~~g~~~~~LP~k~~~~v~v~ls~~er~lY~~l~~ 644 (1007)
|...|..|+..... .....|+.++++|++||++.+ +.. .||++.+.++.|+++..|+.+|..+..
T Consensus 538 f~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~f~lrr~k~~~~v~~-----~Lp~k~e~~~~~~l~~~q~~~y~~~~~ 612 (866)
T COG0553 538 FTRLFEKPIQAEEDIGPLEARELGIELLRKLLSPFILRRTKEDVEVLK-----ELPPKIEKVLECELSEEQRELYEALLE 612 (866)
T ss_pred HHHHHhhhhhhcccccchhhHHHHHHHHHHHHHHHhhcccccchhHHH-----hCChhhhhhhhhcccHHHHHHHHHHHH
Confidence 99999988865443 344558899999999999999 553 899999999999999999999999988
Q ss_pred ---HHHHHHHHHhhcCCC--cc--cHHHHHHHHHHHHhhcCcccccccccccccccchHHHhhcCChHHHHHHHhhcccc
Q 001840 645 ---DSLKKFKAFADAGTV--NQ--NYANILLMLLRLRQACDHPLLVKEYDFDSVGKISGEMAKRLPRDMLIDLLSRLETS 717 (1007)
Q Consensus 645 ---~~~~~~~~~~~~g~~--~~--~~~~il~~L~rLRq~~~hP~L~~~~~~~~~~~~~~e~~~~~~~~~~~~ll~~le~~ 717 (1007)
.....+......... .. ...+++..+++||++|+||.++........
T Consensus 613 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~lr~~~~~p~l~~~~~~~~~-------------------------- 666 (866)
T COG0553 613 GAEKNQQLLEDLEKADSDENRIGDSELNILALLTRLRQICNHPALVDEGLEATF-------------------------- 666 (866)
T ss_pred HHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHhccCcccccccccccc--------------------------
Confidence 444444443222210 11 367899999999999999998865210000
Q ss_pred cccccccCCCCCCccccccCcccchhhhhhhccCCCCCCCCcchhhcccccceecccccccccCCCCCCCCCCCcccccC
Q 001840 718 SAICCVCSDPPEDSVVTMCGHVFCYQCASEYITGDDNMCPAPRCKEQLGADVVFSKTTLKNCVSDDGGGSPTDSPFADKS 797 (1007)
Q Consensus 718 ~~~C~~c~d~~~~~v~t~CgH~~c~~ci~~~~~~~~~~cp~~~cr~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 797 (1007)
+..+.....+.....|.|.
T Consensus 667 ---~~~~~~~~~~~~~~~~~~~---------------------------------------------------------- 685 (866)
T COG0553 667 ---DRIVLLLREDKDFDYLKKP---------------------------------------------------------- 685 (866)
T ss_pred ---chhhhhhhcccccccccch----------------------------------------------------------
Confidence 0000000000000000010
Q ss_pred CCcCcccch-hhHHHHHHHH-HhhhhcccccchhhhhhcccCCCCCccccCCCCCCCCeEEEEecchhHHHHHHHHHhhc
Q 001840 798 GILDNEYIS-SKIRTVLDIL-HTQCELNTKCSIVEIHDLAGSNGSSAVHSKSPIEGPIKSIVFSQWTRMLDLVENSLNQH 875 (1007)
Q Consensus 798 ~~~~~~~~S-sKl~~l~~lL-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvIIFsq~~~~ld~L~~~L~~~ 875 (1007)
....+ .|+..+.++| ......+. ..|+|||+||+.++++|+..|...
T Consensus 686 ----~~~~s~~k~~~l~~ll~~~~~~~~~---------------------------~~kvlifsq~t~~l~il~~~l~~~ 734 (866)
T COG0553 686 ----LIQLSKGKLQALDELLLDKLLEEGH---------------------------YHKVLIFSQFTPVLDLLEDYLKAL 734 (866)
T ss_pred ----hhhccchHHHHHHHHHHHHHHhhcc---------------------------cccEEEEeCcHHHHHHHHHHHHhc
Confidence 11234 7899998988 56655543 039999999999999999999999
Q ss_pred CCeEEEecCCCChHHHHHHHHhhccCcccceeeeeccCcccccccccCCEEEEecCCCCCChhHHHhHhhhccCCcccEE
Q 001840 876 CIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVT 955 (1007)
Q Consensus 876 gi~~~~i~Gs~s~~~R~~~I~~F~~~~~~~VlLlStkagg~GLNL~~A~~VI~~Dp~WNp~~e~QaigRi~RiGQ~k~V~ 955 (1007)
++.+++++|+++.+.|+.+|++|+++++..||++|++|||.||||+.|++||+||+||||+.+.||++|+|||||+++|.
T Consensus 735 ~~~~~~ldG~~~~~~r~~~i~~f~~~~~~~v~lls~kagg~glnLt~a~~vi~~d~~wnp~~~~Qa~dRa~RigQ~~~v~ 814 (866)
T COG0553 735 GIKYVRLDGSTPAKRRQELIDRFNADEEEKVFLLSLKAGGLGLNLTGADTVILFDPWWNPAVELQAIDRAHRIGQKRPVK 814 (866)
T ss_pred CCcEEEEeCCCChhhHHHHHHHhhcCCCCceEEEEecccccceeecccceEEEeccccChHHHHHHHHHHHHhcCcceeE
Confidence 99999999999999999999999998889999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHHHhhcCCCCCCccCCCCHHHHHhhhcC
Q 001840 956 VTRLTIRDTVEDRILKLQDDKRKMVASAFGEDQGGGTASRLTVEDLRYLFMV 1007 (1007)
Q Consensus 956 VyrLi~~~TIEe~I~~lq~~K~~li~~~~g~~~~~~~~~~~t~edl~~lf~~ 1007 (1007)
||+|+++||+||+|+.+|..|..+...++++ ........++.+++..||..
T Consensus 815 v~r~i~~~tiEe~i~~~~~~K~~l~~~~~~~-~~~~~~~~~~~~~~~~l~~~ 865 (866)
T COG0553 815 VYRLITRGTIEEKILELQEKKQELLDSLIDA-EGEKELSKLSIEDLLDLFSL 865 (866)
T ss_pred EEEeecCCcHHHHHHHHHHHHHHHHHHHhhh-hcccchhhccHHHHHHHhcc
Confidence 9999999999999999999999999999985 12234578999999999863
No 16
>KOG1016 consensus Predicted DNA helicase, DEAD-box superfamily [General function prediction only]
Probab=100.00 E-value=9.1e-57 Score=505.35 Aligned_cols=571 Identities=23% Similarity=0.338 Sum_probs=378.5
Q ss_pred cccCchHHHHHHHHHHHhhhcC------CCccCceeecCCCCchHHHHHHHHHhhccccccchhhhccccccccccCCCC
Q 001840 272 SVNLLKHQKIALAWMLQKETRS------LHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLDDD 345 (1007)
Q Consensus 272 ~~~LrpyQ~~~v~wml~~e~~~------~~~~GGILADdmGLGKTiqaIali~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (1007)
.--|+|||.-|+.||+...-.+ ..++|||||+.||||||+|+|+++.....+
T Consensus 252 a~v~kPHQiGGiRFlYDN~iESl~rykkSsGFGCILAHSMGLGKTlQVisF~diflRh---------------------- 309 (1387)
T KOG1016|consen 252 AHVLKPHQIGGIRFLYDNTIESLGRYKKSSGFGCILAHSMGLGKTLQVISFSDIFLRH---------------------- 309 (1387)
T ss_pred HhhcCccccCcEEEehhhHHHHHhhccccCCcceeeeeccccCceeEEeehhHHHhhc----------------------
Confidence 3449999999999997643221 236899999999999999999998664332
Q ss_pred CCCCCcCcccccccCCCCCCCCCCcccccccccCCCCCCCceEEEcChhhHHHHHHHHHHHcCCC--------CCeEEEE
Q 001840 346 DDNGNAGLDKVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPASVLRQWARELEDKVPDK--------AALSVLI 417 (1007)
Q Consensus 346 ~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tLIV~P~sLl~QW~~Ei~k~~~~~--------~~l~vlv 417 (1007)
-+++++|+|+|-..+.||..|+..|.|.- ..+.|.+
T Consensus 310 ------------------------------------T~AKtVL~ivPiNTlQNWlsEfnmWiP~y~sD~~vrpR~F~vf~ 353 (1387)
T KOG1016|consen 310 ------------------------------------TKAKTVLVIVPINTLQNWLSEFNMWIPKYFSDTGVRPRSFEVFL 353 (1387)
T ss_pred ------------------------------------CccceEEEEEehHHHHHHHHHhhhhcCCCcccCCCccceeEEEE
Confidence 56678999999999999999999999851 1344555
Q ss_pred EeCCCCCCCcc------ccCCCcEEEechhhhhccCCCCCCCchhhhhhhcCcccCCcchhhhhhhhccc-ccccccccC
Q 001840 418 YHGGSRTKDPV------ELAKYDVVLTTYSIVTNEVPKQPSVDEEEADEKNGETYGLSSEFSVNKKRKKI-SNVSKRGKK 490 (1007)
Q Consensus 418 ~~g~~r~~~~~------~l~~~dVVItSy~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~-~~~~k~~~~ 490 (1007)
+....++.+.. -...-.|.++-|++++--..+ +-+ ....|+.++
T Consensus 354 LnD~~KT~~~Rakvi~~Wv~~GGVlLvGYemfRLL~lk-----------------------------~~~~~grpkkt~k 404 (1387)
T KOG1016|consen 354 LNDGVKTFDQRAKVIEQWVQTGGVLLVGYEMFRLLILK-----------------------------TLPKKGRPKKTLK 404 (1387)
T ss_pred ecCchhhHHHHHHHHHHHhccCCEEEehHHHHHHHHHh-----------------------------cccccCCcccccc
Confidence 44433322111 124567999999987642111 000 011111111
Q ss_pred CCCCCC--CCC-------cccCCCCccccceeEEEEccCcccCCcccHHHHHHHhcccCcEEEEeccCCCCChhHHHHHH
Q 001840 491 GKKGNV--NSS-------IDYGCGPLAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYF 561 (1007)
Q Consensus 491 ~~k~~~--~~~-------~~~~~~~L~~~~w~rVIlDEAH~iKN~~s~~~kal~~L~a~~r~lLTGTPi~N~l~DL~sll 561 (1007)
+.+... .+. .......|..-..++||+||+|+|||-....+.+++.|+.++|+.|||-|+||++-|+|.|+
T Consensus 405 r~~~~~i~~d~eD~~qe~~~li~~AL~~PGPDlVICDEGHrIKN~~A~iS~aLk~IrtrRRiVLTGYPLQNNLlEYwCMV 484 (1387)
T KOG1016|consen 405 RISSGFIKDDSEDQRQEAYSLIRSALLEPGPDLVICDEGHRIKNITAEISMALKAIRTRRRIVLTGYPLQNNLLEYWCMV 484 (1387)
T ss_pred ccCCcccCCchhhhHHHHHHHHHHHhcCCCCCeEEecCCceeccchHHHHHHHHHhhhceeEEEeccccccchHHHhhhh
Confidence 111100 000 11112336677899999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCcchhHHHHHHcccCcccCch------------hHHHHHHHHHHHhhhhcccCcccCCCccccCCCceEEEEEe
Q 001840 562 RFLKYDPYAVYKSFYSTIKIPISRNSL------------HGYKKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKV 629 (1007)
Q Consensus 562 ~fL~~~~~~~~~~F~~~~~~pi~~~~~------------~~~~~L~~~L~~~~lRRtk~~v~~g~~~~~LP~k~~~~v~v 629 (1007)
+|++|+++++.++|.+.|++||..+.- .....|+.+|..|+-||+...+. +.||.+.+.++.+
T Consensus 485 DFVRP~yLGTR~eF~nmFErPI~NGQCvDStPdDvklmryRtHVLhsLl~GFVQRR~HtvLk-----~~LP~k~EyViLv 559 (1387)
T KOG1016|consen 485 DFVRPKYLGTRKEFINMFERPIKNGQCVDSTPDDVKLMRYRTHVLHSLLKGFVQRRTHTVLK-----KILPEKKEYVILV 559 (1387)
T ss_pred eeccccccchHHHHHHHhhccccCCccccCChhHHHHHHHHHHHHHHHHHHHHHhcchhhHh-----hhcccccceEEEE
Confidence 999999999999999999999976531 12356889999999999987654 4899999999999
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHhhcCCCcccHHHHHHHHHHHHhhcCcccccccccccccccchHHHhhcCChHHHHH
Q 001840 630 DFSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANILLMLLRLRQACDHPLLVKEYDFDSVGKISGEMAKRLPRDMLID 709 (1007)
Q Consensus 630 ~ls~~er~lY~~l~~~~~~~~~~~~~~g~~~~~~~~il~~L~rLRq~~~hP~L~~~~~~~~~~~~~~e~~~~~~~~~~~~ 709 (1007)
.++..||++|..+.....+.. ++..--..+-|.++.---++.+||..+.+...... ...|...+ +.+
T Consensus 560 r~s~iQR~LY~~Fm~d~~r~~------~~~~~~~~NPLkAF~vCcKIWNHPDVLY~~l~k~~--~a~e~dl~-----vee 626 (1387)
T KOG1016|consen 560 RKSQIQRQLYRNFMLDAKREI------AANNDAVFNPLKAFSVCCKIWNHPDVLYRLLEKKK--RAEEDDLR-----VEE 626 (1387)
T ss_pred eHHHHHHHHHHHHHHHHHHhh------ccccccccChHHHHHHHHHhcCChHHHHHHHHHhh--hhhhhhhh-----HHH
Confidence 999999999998865433221 11111112445555556667789987654321100 00000000 000
Q ss_pred HHhhcccccccccccCCCCCCccccccCcccchhhhhhhccCCCCCCCCcchhhcccccceeccccccccc-CCCCCCCC
Q 001840 710 LLSRLETSSAICCVCSDPPEDSVVTMCGHVFCYQCASEYITGDDNMCPAPRCKEQLGADVVFSKTTLKNCV-SDDGGGSP 788 (1007)
Q Consensus 710 ll~~le~~~~~C~~c~d~~~~~v~t~CgH~~c~~ci~~~~~~~~~~cp~~~cr~~l~~~~~~~~~~l~~~~-~~~~~~~~ 788 (1007)
+. .......|+--..++-++-.+... ..-+... ...+-...
T Consensus 627 ~~--~ag~~~~~~P~~~~~~~~s~~laS------------------------------------s~~k~~n~t~kp~~s~ 668 (1387)
T KOG1016|consen 627 MK--FAGLQQQQSPFNSIPSNPSTPLAS------------------------------------STSKSANKTKKPRGSK 668 (1387)
T ss_pred Hh--hhcccccCCCCCCCCCCCCCcccc------------------------------------hhhhhhcccCCcccCc
Confidence 00 001111222111111111000000 0000000 00000000
Q ss_pred CCCcccccCCCcCcccchhhH-HHHHHHHHhh----hhcccccchhhhhhcccCCCCCccccCCCCCCCCeEEEEecchh
Q 001840 789 TDSPFADKSGILDNEYISSKI-RTVLDILHTQ----CELNTKCSIVEIHDLAGSNGSSAVHSKSPIEGPIKSIVFSQWTR 863 (1007)
Q Consensus 789 ~~~~~~~~~~~~~~~~~SsKl-~~l~~lL~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvIIFsq~~~ 863 (1007)
..+.+.+.... --|. .+..+++.+. ++.+.+|-++- .+ ......-++|+|||||...
T Consensus 669 ~~p~f~ee~~e------~~~y~~w~~el~~nYq~gvLen~pk~V~~~-----------~~-~des~~~g~kil~fSq~l~ 730 (1387)
T KOG1016|consen 669 KAPKFDEEDEE------VEKYSDWTFELFENYQEGVLENGPKIVISL-----------EI-LDESTQIGEKILIFSQNLT 730 (1387)
T ss_pred CCCCccccccc------ccchhhHHHHHHhhhhcccccCCCceEEEE-----------ee-eccccccCceEEEeecchh
Confidence 00111110000 0000 1222222211 11111110000 00 0001112459999999999
Q ss_pred HHHHHHHHHhhcC------------------CeEEEecCCCChHHHHHHHHhhccCcccc-eeeeeccCcccccccccCC
Q 001840 864 MLDLVENSLNQHC------------------IQYRRLDGTMSLPARDRAVKDFNTDREIT-VMLMSLKAGNLGLNMVAAS 924 (1007)
Q Consensus 864 ~ld~L~~~L~~~g------------------i~~~~i~Gs~s~~~R~~~I~~F~~~~~~~-VlLlStkagg~GLNL~~A~ 924 (1007)
.|++|++.|.++. +.|.+++|.++..+|+++|++||..+.+. .||+|+++|..|+||..||
T Consensus 731 ~Ld~ieeil~krq~pc~~gdnG~~aqkW~~n~sy~rldG~t~a~~rekLinqfN~e~~lsWlfllstrag~lGinLIsan 810 (1387)
T KOG1016|consen 731 ALDMIEEILKKRQIPCKDGDNGCPAQKWEKNRSYLRLDGTTSAADREKLINQFNSEPGLSWLFLLSTRAGSLGINLISAN 810 (1387)
T ss_pred HHHHHHHHHhcccccCCCCCCCCchhhhhhccceecccCCcccchHHHHHHhccCCCCceeeeeehhccccccceeeccc
Confidence 9999999998762 46899999999999999999999988887 8999999999999999999
Q ss_pred EEEEecCCCCCChhHHHhHhhhccCCcccEEEEEEEeCCCHHHHHHHHHHHHHHHHHHhhcCCCCCCccCCCCHHHHHhh
Q 001840 925 HVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVEDRILKLQDDKRKMVASAFGEDQGGGTASRLTVEDLRYL 1004 (1007)
Q Consensus 925 ~VI~~Dp~WNp~~e~QaigRi~RiGQ~k~V~VyrLi~~~TIEe~I~~lq~~K~~li~~~~g~~~~~~~~~~~t~edl~~l 1004 (1007)
+||++|..|||....||++|++|+||+|+++||||++..++|.+||.+|-.|+.|.++++++-.. ...++..||..|
T Consensus 811 r~~ifda~wnpchdaqavcRvyrYGQ~KpcfvYRlVmD~~lEkkIydRQIsKqGmsdRvVDd~np---~an~s~Ke~enL 887 (1387)
T KOG1016|consen 811 RCIIFDACWNPCHDAQAVCRVYRYGQQKPCFVYRLVMDNSLEKKIYDRQISKQGMSDRVVDDANP---DANISQKELENL 887 (1387)
T ss_pred eEEEEEeecCccccchhhhhhhhhcCcCceeEEeehhhhhhHHHHHHHHHhhccchhhhhcccCc---cccccHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999976432 355788888877
Q ss_pred hc
Q 001840 1005 FM 1006 (1007)
Q Consensus 1005 f~ 1006 (1007)
++
T Consensus 888 l~ 889 (1387)
T KOG1016|consen 888 LM 889 (1387)
T ss_pred hh
Confidence 64
No 17
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]
Probab=100.00 E-value=1.4e-55 Score=479.41 Aligned_cols=423 Identities=27% Similarity=0.373 Sum_probs=325.8
Q ss_pred CCCcccccCchHHHHHHHHHHHhhhcCCCccCceeecCCCCchHHHHHHHHHhhccccccchhhhccccccccccCCCCC
Q 001840 267 PDGLLSVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLDDDD 346 (1007)
Q Consensus 267 P~~~~~~~LrpyQ~~~v~wml~~e~~~~~~~GGILADdmGLGKTiqaIali~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (1007)
|+.+.+ .|+|||++||.+.+++.. -.|||||||||||+||||++.+.+..
T Consensus 192 d~kLvs-~LlPFQreGv~faL~RgG------R~llADeMGLGKTiQAlaIA~yyraE----------------------- 241 (689)
T KOG1000|consen 192 DPKLVS-RLLPFQREGVIFALERGG------RILLADEMGLGKTIQALAIARYYRAE----------------------- 241 (689)
T ss_pred CHHHHH-hhCchhhhhHHHHHhcCC------eEEEecccccchHHHHHHHHHHHhhc-----------------------
Confidence 455544 499999999999996521 14999999999999999999876543
Q ss_pred CCCCcCcccccccCCCCCCCCCCcccccccccCCCCCCCceEEEcChhhHHHHHHHHHHHcCCCCCeEEEEEeCCC-CCC
Q 001840 347 DNGNAGLDKVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPASVLRQWARELEDKVPDKAALSVLIYHGGS-RTK 425 (1007)
Q Consensus 347 ~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tLIV~P~sLl~QW~~Ei~k~~~~~~~l~vlv~~g~~-r~~ 425 (1007)
++.|||||++|...|++++.+|+|.- ..+.+..+.. +..
T Consensus 242 --------------------------------------wplliVcPAsvrftWa~al~r~lps~--~pi~vv~~~~D~~~ 281 (689)
T KOG1000|consen 242 --------------------------------------WPLLIVCPASVRFTWAKALNRFLPSI--HPIFVVDKSSDPLP 281 (689)
T ss_pred --------------------------------------CcEEEEecHHHhHHHHHHHHHhcccc--cceEEEecccCCcc
Confidence 55899999999999999999999963 3343433333 221
Q ss_pred CccccCCCcEEEechhhhhccCCCCCCCchhhhhhhcCcccCCcchhhhhhhhcccccccccccCCCCCCCCCCcccCCC
Q 001840 426 DPVELAKYDVVLTTYSIVTNEVPKQPSVDEEEADEKNGETYGLSSEFSVNKKRKKISNVSKRGKKGKKGNVNSSIDYGCG 505 (1007)
Q Consensus 426 ~~~~l~~~dVVItSy~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~k~~~~~~k~~~~~~~~~~~~ 505 (1007)
+. -....|+|+||+.+.... .
T Consensus 282 ~~--~t~~~v~ivSye~ls~l~---------------------------------------------------------~ 302 (689)
T KOG1000|consen 282 DV--CTSNTVAIVSYEQLSLLH---------------------------------------------------------D 302 (689)
T ss_pred cc--ccCCeEEEEEHHHHHHHH---------------------------------------------------------H
Confidence 11 122458999999987521 0
Q ss_pred CccccceeEEEEccCcccCCcccHHHHHHHhc--ccCcEEEEeccCCCCChhHHHHHHHHHhcCCcchhHHHHHHcccCc
Q 001840 506 PLAKVGWFRVVLDEAQTIKNHRTQVARACCSL--RAKRRWCLSGTPIQNSIDDLYSYFRFLKYDPYAVYKSFYSTIKIPI 583 (1007)
Q Consensus 506 ~L~~~~w~rVIlDEAH~iKN~~s~~~kal~~L--~a~~r~lLTGTPi~N~l~DL~sll~fL~~~~~~~~~~F~~~~~~pi 583 (1007)
.|..-.|.+||+||+|++|+.++++.+++..+ .+++.++|||||-..++.|||.++..+++-.|.++.+|..+|+.--
T Consensus 303 ~l~~~~~~vvI~DEsH~Lk~sktkr~Ka~~dllk~akhvILLSGTPavSRP~elytqi~avd~tlfp~f~efa~rYCd~k 382 (689)
T KOG1000|consen 303 ILKKEKYRVVIFDESHMLKDSKTKRTKAATDLLKVAKHVILLSGTPAVSRPSELYTQIRAVDHTLFPNFHEFAIRYCDGK 382 (689)
T ss_pred HHhcccceEEEEechhhhhccchhhhhhhhhHHHHhhheEEecCCcccCCchhhhhhhhhhcccccccHHHHHHHhcCcc
Confidence 13444599999999999999999999999887 6889999999999999999999999999999999999999886432
Q ss_pred cc------CchhHHHHHHHHH-HHhhhhcccCcccCCCccccCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHHHhhc
Q 001840 584 SR------NSLHGYKKLQAVL-RAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEWAFYKKLESDSLKKFKAFADA 656 (1007)
Q Consensus 584 ~~------~~~~~~~~L~~~L-~~~~lRRtk~~v~~g~~~~~LP~k~~~~v~v~ls~~er~lY~~l~~~~~~~~~~~~~~ 656 (1007)
.- ..-.+..+|..+| +.+|+||+|.+|+. +||||...++ +.....+.+.-+.+.....+ +...
T Consensus 383 ~vr~~~Dykg~tnl~EL~~lL~k~lMIRRlK~dvL~-----qLPpKrr~Vv-~~~~gr~da~~~~lv~~a~~----~t~~ 452 (689)
T KOG1000|consen 383 QVRFCFDYKGCTNLEELAALLFKRLMIRRLKADVLK-----QLPPKRREVV-YVSGGRIDARMDDLVKAAAD----YTKV 452 (689)
T ss_pred ccceeeecCCCCCHHHHHHHHHHHHHHHHHHHHHHh-----hCCccceEEE-EEcCCccchHHHHHHHHhhh----cchh
Confidence 11 1123466777777 56899999999986 8999955444 44444444433333332221 0000
Q ss_pred CCCcccHHHHHHHHHHHHhhcCcccccccccccccccchHHHhhcCChHHHHHHHhhcccccccccccCCCCCCcccccc
Q 001840 657 GTVNQNYANILLMLLRLRQACDHPLLVKEYDFDSVGKISGEMAKRLPRDMLIDLLSRLETSSAICCVCSDPPEDSVVTMC 736 (1007)
Q Consensus 657 g~~~~~~~~il~~L~rLRq~~~hP~L~~~~~~~~~~~~~~e~~~~~~~~~~~~ll~~le~~~~~C~~c~d~~~~~v~t~C 736 (1007)
....+ +-..+++..+
T Consensus 453 ~~~e~---~~~~l~l~y~-------------------------------------------------------------- 467 (689)
T KOG1000|consen 453 NSMER---KHESLLLFYS-------------------------------------------------------------- 467 (689)
T ss_pred hhhhh---hhHHHHHHHH--------------------------------------------------------------
Confidence 00000 0000011000
Q ss_pred CcccchhhhhhhccCCCCCCCCcchhhcccccceecccccccccCCCCCCCCCCCcccccCCCcCcccchhhHHHHHHHH
Q 001840 737 GHVFCYQCASEYITGDDNMCPAPRCKEQLGADVVFSKTTLKNCVSDDGGGSPTDSPFADKSGILDNEYISSKIRTVLDIL 816 (1007)
Q Consensus 737 gH~~c~~ci~~~~~~~~~~cp~~~cr~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SsKl~~l~~lL 816 (1007)
...-.|+.++.+.|
T Consensus 468 ------------------------------------------------------------------~tgiaK~~av~eyi 481 (689)
T KOG1000|consen 468 ------------------------------------------------------------------LTGIAKAAAVCEYI 481 (689)
T ss_pred ------------------------------------------------------------------HhcccccHHHHHHH
Confidence 01245777777777
Q ss_pred HhhhhcccccchhhhhhcccCCCCCccccCCCCCCCCeEEEEecchhHHHHHHHHHhhcCCeEEEecCCCChHHHHHHHH
Q 001840 817 HTQCELNTKCSIVEIHDLAGSNGSSAVHSKSPIEGPIKSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVK 896 (1007)
Q Consensus 817 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvIIFsq~~~~ld~L~~~L~~~gi~~~~i~Gs~s~~~R~~~I~ 896 (1007)
..+.-.. ..++.|+|||+....++|-|+..+.++++.++||||+++...|+.+++
T Consensus 482 ~~~~~l~-------------------------d~~~~KflVFaHH~~vLd~Iq~~~~~r~vg~IRIDGst~s~~R~ll~q 536 (689)
T KOG1000|consen 482 LENYFLP-------------------------DAPPRKFLVFAHHQIVLDTIQVEVNKRKVGSIRIDGSTPSHRRTLLCQ 536 (689)
T ss_pred HhCcccc-------------------------cCCCceEEEEehhHHHHHHHHHHHHHcCCCeEEecCCCCchhHHHHHH
Confidence 6522111 123559999999999999999999999999999999999999999999
Q ss_pred hhccCcccceeeeeccCcccccccccCCEEEEecCCCCCChhHHHhHhhhccCCcccEEEEEEEeCCCHHHHHHHHHHHH
Q 001840 897 DFNTDREITVMLMSLKAGNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVEDRILKLQDDK 976 (1007)
Q Consensus 897 ~F~~~~~~~VlLlStkagg~GLNL~~A~~VI~~Dp~WNp~~e~QaigRi~RiGQ~k~V~VyrLi~~~TIEe~I~~lq~~K 976 (1007)
.|+.+.++.|-|+|..|+|+||+|++|+.|+|.+++|||....||.||+||+||+.-|.||+|+++||+||.++...+.|
T Consensus 537 sFQ~seev~VAvlsItA~gvGLt~tAa~~VVFaEL~wnPgvLlQAEDRaHRiGQkssV~v~ylvAKgT~Ddy~Wp~l~~K 616 (689)
T KOG1000|consen 537 SFQTSEEVRVAVLSITAAGVGLTLTAASVVVFAELHWNPGVLLQAEDRAHRIGQKSSVFVQYLVAKGTADDYMWPMLQQK 616 (689)
T ss_pred HhccccceEEEEEEEeecccceeeeccceEEEEEecCCCceEEechhhhhhccccceeeEEEEEecCchHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhh
Q 001840 977 RKMVASAF 984 (1007)
Q Consensus 977 ~~li~~~~ 984 (1007)
...+.++-
T Consensus 617 L~vl~s~g 624 (689)
T KOG1000|consen 617 LDVLGSVG 624 (689)
T ss_pred HHHHhhcc
Confidence 98877663
No 18
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=100.00 E-value=8e-55 Score=535.70 Aligned_cols=420 Identities=20% Similarity=0.284 Sum_probs=315.2
Q ss_pred cccCchHHHHHHHHHHHhhhcCCCccCceeecCCCCchHHHHHHHHHhhccccccchhhhccccccccccCCCCCCCCCc
Q 001840 272 SVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLDDDDDNGNA 351 (1007)
Q Consensus 272 ~~~LrpyQ~~~v~wml~~e~~~~~~~GGILADdmGLGKTiqaIali~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (1007)
.+.|+|||+..+.+++.+.. ...||||||||||||+|++++......
T Consensus 150 ~~~l~pHQl~~~~~vl~~~~-----~R~LLADEvGLGKTIeAglil~~l~~~---------------------------- 196 (956)
T PRK04914 150 RASLIPHQLYIAHEVGRRHA-----PRVLLADEVGLGKTIEAGMIIHQQLLT---------------------------- 196 (956)
T ss_pred CCCCCHHHHHHHHHHhhccC-----CCEEEEeCCcCcHHHHHHHHHHHHHHc----------------------------
Confidence 67799999999988876543 346999999999999999888653221
Q ss_pred CcccccccCCCCCCCCCCcccccccccCCCCCCCceEEEcChhhHHHHHHHHHHHcCCCCCeEEEEEeCCCCC----CCc
Q 001840 352 GLDKVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRT----KDP 427 (1007)
Q Consensus 352 ~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tLIV~P~sLl~QW~~Ei~k~~~~~~~l~vlv~~g~~r~----~~~ 427 (1007)
+..+++|||||++|+.||..|+.+++. +.+.++.+..-. ...
T Consensus 197 ------------------------------g~~~rvLIVvP~sL~~QW~~El~~kF~----l~~~i~~~~~~~~~~~~~~ 242 (956)
T PRK04914 197 ------------------------------GRAERVLILVPETLQHQWLVEMLRRFN----LRFSLFDEERYAEAQHDAD 242 (956)
T ss_pred ------------------------------CCCCcEEEEcCHHHHHHHHHHHHHHhC----CCeEEEcCcchhhhccccc
Confidence 445679999999999999999988874 555666554311 111
Q ss_pred cccCCCcEEEechhhhhccCCCCCCCchhhhhhhcCcccCCcchhhhhhhhcccccccccccCCCCCCCCCCcccCCCCc
Q 001840 428 VELAKYDVVLTTYSIVTNEVPKQPSVDEEEADEKNGETYGLSSEFSVNKKRKKISNVSKRGKKGKKGNVNSSIDYGCGPL 507 (1007)
Q Consensus 428 ~~l~~~dVVItSy~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~k~~~~~~k~~~~~~~~~~~~~L 507 (1007)
..+..++++|+||+.+++.... ...+
T Consensus 243 ~pf~~~~~vI~S~~~l~~~~~~------------------------------------------------------~~~l 268 (956)
T PRK04914 243 NPFETEQLVICSLDFLRRNKQR------------------------------------------------------LEQA 268 (956)
T ss_pred CccccCcEEEEEHHHhhhCHHH------------------------------------------------------HHHH
Confidence 3345689999999998753100 0014
Q ss_pred cccceeEEEEccCcccCCc---ccHHHHHHHhc--ccCcEEEEeccCCCCChhHHHHHHHHHhcCCcchhHHHHHHccc-
Q 001840 508 AKVGWFRVVLDEAQTIKNH---RTQVARACCSL--RAKRRWCLSGTPIQNSIDDLYSYFRFLKYDPYAVYKSFYSTIKI- 581 (1007)
Q Consensus 508 ~~~~w~rVIlDEAH~iKN~---~s~~~kal~~L--~a~~r~lLTGTPi~N~l~DL~sll~fL~~~~~~~~~~F~~~~~~- 581 (1007)
....|++|||||||++++. .|+.++++..| +++++++|||||++|++.|+|++++||+|+.|.++..|....+.
T Consensus 269 ~~~~wdlvIvDEAH~lk~~~~~~s~~y~~v~~La~~~~~~LLLTATP~q~~~~e~falL~lLdP~~f~~~~~F~~e~~~~ 348 (956)
T PRK04914 269 LAAEWDLLVVDEAHHLVWSEEAPSREYQVVEQLAEVIPGVLLLTATPEQLGQESHFARLRLLDPDRFHDYEAFVEEQQQY 348 (956)
T ss_pred hhcCCCEEEEechhhhccCCCCcCHHHHHHHHHhhccCCEEEEEcCcccCCcHHHHHhhhhhCCCcCCCHHHHHHHHHhh
Confidence 4567999999999999953 46778888888 57799999999999999999999999999999999999753321
Q ss_pred -Cc--------ccC--chhHHHHH---------------------------HHHHH---------HhhhhcccCcccCCC
Q 001840 582 -PI--------SRN--SLHGYKKL---------------------------QAVLR---------AIMLRRTKGTFIDGQ 614 (1007)
Q Consensus 582 -pi--------~~~--~~~~~~~L---------------------------~~~L~---------~~~lRRtk~~v~~g~ 614 (1007)
|+ ... .......| +++++ .+|+|+++..+.
T Consensus 349 ~~~a~~v~~l~~~~~~~~~~~~~l~~ll~~~~~~~l~~~~~~~~~~~~~~~~~~i~~L~d~hg~~rvm~RntR~~v~--- 425 (956)
T PRK04914 349 RPVADAVQALLAGEKLSDDALNALGELLGEQDIEPLLQAANSDSEEAQAARQELISELLDRHGTGRVLFRNTRAAVK--- 425 (956)
T ss_pred HHHHHHHHHHhcCCcCCHHHHHHHHHHhcccchhHHHhhhcccccccHHHHHHHHHHHHhhcCcceEEEeccHHhhc---
Confidence 11 000 00011111 11222 578888888875
Q ss_pred ccccCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHHHhhcCCCcccHHHHHHHHHHHHhhcCcccccccccccccccc
Q 001840 615 PIINLPPKTISLTKVDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANILLMLLRLRQACDHPLLVKEYDFDSVGKI 694 (1007)
Q Consensus 615 ~~~~LP~k~~~~v~v~ls~~er~lY~~l~~~~~~~~~~~~~~g~~~~~~~~il~~L~rLRq~~~hP~L~~~~~~~~~~~~ 694 (1007)
.+|++..+.+.+++++.++..+.... . ..+++ +.+|..+..
T Consensus 426 ---~fp~R~~~~~~l~~~~~y~~~~~~~~---~-----------------------~~~~~-~l~pe~~~~--------- 466 (956)
T PRK04914 426 ---GFPKRELHPIPLPLPEQYQTAIKVSL---E-----------------------ARARD-MLYPEQIYQ--------- 466 (956)
T ss_pred ---CCCcCceeEeecCCCHHHHHHHHHhH---H-----------------------HHHHh-hcCHHHHHH---------
Confidence 58999999999999876555443200 0 01111 112211000
Q ss_pred hHHHhhcCChHHHHHHHhhcccccccccccCCCCCCccccccCcccchhhhhhhccCCCCCCCCcchhhcccccceeccc
Q 001840 695 SGEMAKRLPRDMLIDLLSRLETSSAICCVCSDPPEDSVVTMCGHVFCYQCASEYITGDDNMCPAPRCKEQLGADVVFSKT 774 (1007)
Q Consensus 695 ~~e~~~~~~~~~~~~ll~~le~~~~~C~~c~d~~~~~v~t~CgH~~c~~ci~~~~~~~~~~cp~~~cr~~l~~~~~~~~~ 774 (1007)
.++.
T Consensus 467 ------------------~~~~---------------------------------------------------------- 470 (956)
T PRK04914 467 ------------------EFED---------------------------------------------------------- 470 (956)
T ss_pred ------------------HHhh----------------------------------------------------------
Confidence 0000
Q ss_pred ccccccCCCCCCCCCCCcccccCCCcCcccchhhHHHHHHHHHhhhhcccccchhhhhhcccCCCCCccccCCCCCCCCe
Q 001840 775 TLKNCVSDDGGGSPTDSPFADKSGILDNEYISSKIRTVLDILHTQCELNTKCSIVEIHDLAGSNGSSAVHSKSPIEGPIK 854 (1007)
Q Consensus 775 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SsKl~~l~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~K 854 (1007)
.......++|+..|+++|+... + .|
T Consensus 471 ------------------------~~~~~~~d~Ki~~L~~~L~~~~--~-----------------------------~K 495 (956)
T PRK04914 471 ------------------------NATWWNFDPRVEWLIDFLKSHR--S-----------------------------EK 495 (956)
T ss_pred ------------------------hhhccccCHHHHHHHHHHHhcC--C-----------------------------Ce
Confidence 0000124689999999997653 2 29
Q ss_pred EEEEecchhHHHHHHHHH-hhcCCeEEEecCCCChHHHHHHHHhhccCc-ccceeeeeccCcccccccccCCEEEEecCC
Q 001840 855 SIVFSQWTRMLDLVENSL-NQHCIQYRRLDGTMSLPARDRAVKDFNTDR-EITVMLMSLKAGNLGLNMVAASHVILLDLW 932 (1007)
Q Consensus 855 vIIFsq~~~~ld~L~~~L-~~~gi~~~~i~Gs~s~~~R~~~I~~F~~~~-~~~VlLlStkagg~GLNL~~A~~VI~~Dp~ 932 (1007)
+||||++..+++.|.+.| ...|++++.++|+|+..+|+++++.|++++ +++||| ++++||+|+||+.|++||+||+|
T Consensus 496 vLVF~~~~~t~~~L~~~L~~~~Gi~~~~ihG~~s~~eR~~~~~~F~~~~~~~~VLI-sTdvgseGlNlq~a~~VInfDlP 574 (956)
T PRK04914 496 VLVICAKAATALQLEQALREREGIRAAVFHEGMSIIERDRAAAYFADEEDGAQVLL-CSEIGSEGRNFQFASHLVLFDLP 574 (956)
T ss_pred EEEEeCcHHHHHHHHHHHhhccCeeEEEEECCCCHHHHHHHHHHHhcCCCCccEEE-echhhccCCCcccccEEEEecCC
Confidence 999999999999999999 567999999999999999999999999753 677776 55999999999999999999999
Q ss_pred CCCChhHHHhHhhhccCCcccEEEEEEEeCCCHHHHHHHHHHHHHHHHHHhhcC
Q 001840 933 WNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVEDRILKLQDDKRKMVASAFGE 986 (1007)
Q Consensus 933 WNp~~e~QaigRi~RiGQ~k~V~VyrLi~~~TIEe~I~~lq~~K~~li~~~~g~ 986 (1007)
|||..++|||||+||+||+++|.||+++.++|+|++|+.+...|.++++..++.
T Consensus 575 ~nP~~~eQRIGR~~RiGQ~~~V~i~~~~~~~t~~e~i~~~~~~~l~ife~~~~~ 628 (956)
T PRK04914 575 FNPDLLEQRIGRLDRIGQKHDIQIHVPYLEGTAQERLFRWYHEGLNAFEHTCPT 628 (956)
T ss_pred CCHHHHHHHhcccccCCCCceEEEEEccCCCCHHHHHHHHHhhhcCceeccCCC
Confidence 999999999999999999999999999999999999999999998777666654
No 19
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=100.00 E-value=1e-49 Score=474.80 Aligned_cols=372 Identities=31% Similarity=0.492 Sum_probs=251.3
Q ss_pred CCCCCCcccccCchHHHHHHHHHHHhhhcC--------------------------------------CCccCceeecCC
Q 001840 264 ATLPDGLLSVNLLKHQKIALAWMLQKETRS--------------------------------------LHCLGGILADDQ 305 (1007)
Q Consensus 264 ~~~P~~~~~~~LrpyQ~~~v~wml~~e~~~--------------------------------------~~~~GGILADdm 305 (1007)
.+.+..+ .-.+|+||...+.||.+++... .+..||.+||+|
T Consensus 236 ~D~~~~~-~~~~r~~~~r~~~~~~~~~~e~~~~s~~~It~~~~~di~~~~~~~l~~~~~~~~~~l~~e~l~~~~t~~de~ 314 (1394)
T KOG0298|consen 236 LDLIKRF-QSQLRKYQQRTVSWMPSREQEYTQVSANFITLHLIDDITRVFKLKLCFQFYSFEEELPKESLSPGGTLADEM 314 (1394)
T ss_pred chHHHHh-hhhccHHHHHHHHhccccchhhhhccccccccccccchHHHhhhccceecccccccchhccCCCcchHHHHh
Confidence 3344444 4469999999999999888731 124689999999
Q ss_pred CCchHHHHHHHHHhhccccccchhhhcc-----------------ccccccccCCCCCCCCCcCc--ccc------cc-c
Q 001840 306 GLGKTISIIALIQMQRSLQSKSKTEVLG-----------------NQKTEALNLDDDDDNGNAGL--DKV------KE-T 359 (1007)
Q Consensus 306 GLGKTiqaIali~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~--~~~------k~-~ 359 (1007)
|||||++-+|++..++....-+...... +.+... -+..+.-+|...+ ++. +. .
T Consensus 315 gl~k~~E~~a~~~~n~~p~~~~~~s~~~~~~~~~~~~~e~~~~r~nq~~~~-~~~~~~~~g~~~~~ade~~~qk~~~~l~ 393 (1394)
T KOG0298|consen 315 GLGKTVEFLAMLTSNRRPPDSYRNSYLHQRLEEYSDEVELKRSRINQKDEV-LCSGDKKHGKRVQCADEMGWQKTSEKLI 393 (1394)
T ss_pred hhHHHHHHHHHHhccCCCcccccchHHHHHHHHHhhhhHhHHhHhhhhhHH-hhcCCccCCcceeehhhhhccchHHHHH
Confidence 9999999999998877664221111000 000000 0111111111111 100 00 0
Q ss_pred CCCCC-CC-CCCcccccccccCCCCCCCceEEEcChhhHHHHHHHHHHHcCCCCCeEEEEEeCCCCC--CCccccCCCcE
Q 001840 360 GESDD-IK-PVPEVSTSTRSFSRRRPAAGTLVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRT--KDPVELAKYDV 435 (1007)
Q Consensus 360 ~~~~~-~~-~~~~~~~~~~~~~~~~~~~~tLIV~P~sLl~QW~~Ei~k~~~~~~~l~vlv~~g~~r~--~~~~~l~~~dV 435 (1007)
..-.+ .+ +..+.+.-..+.......|+||||||.+++.||..||.+|+.. .++|+.|.|-... ..+..+.+|||
T Consensus 394 ~~l~~~~k~~~~~cS~~~~e~~n~~~tgaTLII~P~aIl~QW~~EI~kH~~~--~lKv~~Y~Girk~~~~~~~el~~yDI 471 (1394)
T KOG0298|consen 394 LELSDLPKLCPSCCSELVKEGENLVETGATLIICPNAILMQWFEEIHKHISS--LLKVLLYFGIRKTFWLSPFELLQYDI 471 (1394)
T ss_pred HHHhcccccchhhhhHHHhcccceeecCceEEECcHHHHHHHHHHHHHhccc--cceEEEEechhhhcccCchhhhccCE
Confidence 00001 01 1111111122333346678999999999999999999999986 4799999997644 34578899999
Q ss_pred EEechhhhhccCCCCCCCchhhhhhhcCcccCCcchhhhhhhhcccccccccccCCCCCCCCCCcccCCCCccccceeEE
Q 001840 436 VLTTYSIVTNEVPKQPSVDEEEADEKNGETYGLSSEFSVNKKRKKISNVSKRGKKGKKGNVNSSIDYGCGPLAKVGWFRV 515 (1007)
Q Consensus 436 VItSy~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~k~~~~~~k~~~~~~~~~~~~~L~~~~w~rV 515 (1007)
|+|||+++++++.... .++.. ... +..+ ..-...+||..+.|+||
T Consensus 472 VlTtYdiLr~El~hte---------~~~~~-----R~l---------------R~qs------r~~~~~SPL~~v~wWRI 516 (1394)
T KOG0298|consen 472 VLTTYDILRNELYHTE---------DFGSD-----RQL---------------RHQS------RYMRPNSPLLMVNWWRI 516 (1394)
T ss_pred EEeehHHHHhHhhccc---------ccCCh-----hhh---------------hccc------CCCCCCCchHHHHHHHH
Confidence 9999999999865410 00000 000 0000 01112368999999999
Q ss_pred EEccCcccCCcccHHHHHHHhcccCcEEEEeccCCCCChhHHHHHHHHHhcCCcchhHHHHHHcccCcccCchhHHHHHH
Q 001840 516 VLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRFLKYDPYAVYKSFYSTIKIPISRNSLHGYKKLQ 595 (1007)
Q Consensus 516 IlDEAH~iKN~~s~~~kal~~L~a~~r~lLTGTPi~N~l~DL~sll~fL~~~~~~~~~~F~~~~~~pi~~~~~~~~~~L~ 595 (1007)
||||||.+....|..++.+..|.+.++||.||||+++ ++||+.||.||+..||....+|.+.+..++.+. .....+.
T Consensus 517 clDEaQMvesssS~~a~M~~rL~~in~W~VTGTPiq~-Iddl~~Ll~fLk~~Pf~~~~~~iq~v~~~~~~r--a~~~~~~ 593 (1394)
T KOG0298|consen 517 CLDEAQMVESSSSAAAEMVRRLHAINRWCVTGTPIQK-IDDLFPLLEFLKLPPFCRPQDFIQTVDKAYQLR--AKCEPLL 593 (1394)
T ss_pred hhhHHHhhcchHHHHHHHHHHhhhhceeeecCCchhh-hhhhHHHHHHhcCCCCCChHHHHHHHHHHHHHH--hhhhhHH
Confidence 9999999999999999999999999999999999999 999999999999999999999999987766544 3345677
Q ss_pred HHHHHhhhhcccCcccCCCccccCCCceEEEEEecCCHHHHHHHH----HHHHHHHHHHHHHhh---------cCCCccc
Q 001840 596 AVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEWAFYK----KLESDSLKKFKAFAD---------AGTVNQN 662 (1007)
Q Consensus 596 ~~L~~~~lRRtk~~v~~g~~~~~LP~k~~~~v~v~ls~~er~lY~----~l~~~~~~~~~~~~~---------~g~~~~~ 662 (1007)
++++..+-|+.+-.|... +.+||..+.+....+++.+-.+|+ ....+.+..+..... ++.....
T Consensus 594 dl~~q~l~R~~k~~v~~e---l~~ppq~e~~h~~~~sa~~s~v~r~~~~t~v~e~~~~~~~~k~~~l~~~sd~~~l~~~~ 670 (1394)
T KOG0298|consen 594 DLFKQLLWRTFKSKVEHE---LGLPPQTEVVHRLELSAVESHVYREEHFTCVEEFAAAVEKLKRHNLDNSSDLASLSPQL 670 (1394)
T ss_pred HHHHhhhhhhhhHHHHHH---hCCCchHHHHHHHHhcchhhhhhHHHHhhHHHHHHHHHHHHHHhccccccccccCChhh
Confidence 888999999998877542 579998887777777777666654 333333333333221 1111223
Q ss_pred HHHHHHHHHHHHhhcCcc
Q 001840 663 YANILLMLLRLRQACDHP 680 (1007)
Q Consensus 663 ~~~il~~L~rLRq~~~hP 680 (1007)
.+.++..+++|||+||||
T Consensus 671 ~a~i~~~l~rLRq~Cchp 688 (1394)
T KOG0298|consen 671 LAIILKWLLRLRQACCHP 688 (1394)
T ss_pred HHHHHHHHHHHHHhhccc
Confidence 678899999999999999
No 20
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=100.00 E-value=5.8e-44 Score=398.72 Aligned_cols=291 Identities=40% Similarity=0.643 Sum_probs=225.8
Q ss_pred HHHHHHHHHHHhh------hcCCCccCceeecCCCCchHHHHHHHHHhhccccccchhhhccccccccccCCCCCCCCCc
Q 001840 278 HQKIALAWMLQKE------TRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLDDDDDNGNA 351 (1007)
Q Consensus 278 yQ~~~v~wml~~e------~~~~~~~GGILADdmGLGKTiqaIali~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (1007)
||++||.||+.++ ......+|||||||||+|||+++|+++.......
T Consensus 1 ~Q~~~v~~m~~~~~~~~~~~~~~~~~g~lL~de~GlGKT~~~i~~~~~l~~~~--------------------------- 53 (299)
T PF00176_consen 1 HQLEAVRWMLDRELVEEYPNSESPPRGGLLADEMGLGKTITAIALISYLKNEF--------------------------- 53 (299)
T ss_dssp HHHHHHHHHHHHH----TTSSSTTT-EEEE---TTSSHHHHHHHHHHHHHHCC---------------------------
T ss_pred CHHHHHHHHHHHhhhhcccccccCCCCEEEEECCCCCchhhhhhhhhhhhhcc---------------------------
Confidence 8999999999998 2222458999999999999999999997543220
Q ss_pred CcccccccCCCCCCCCCCcccccccccCCCCCCCceEEEcChhhHHHHHHHHHHHcCCCCCeEEEEEeCCC--CCCCccc
Q 001840 352 GLDKVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPASVLRQWARELEDKVPDKAALSVLIYHGGS--RTKDPVE 429 (1007)
Q Consensus 352 ~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tLIV~P~sLl~QW~~Ei~k~~~~~~~l~vlv~~g~~--r~~~~~~ 429 (1007)
.....+++|||||.+++.||..||.+|+++. .+++++|+|.. +......
T Consensus 54 ----------------------------~~~~~~~~LIv~P~~l~~~W~~E~~~~~~~~-~~~v~~~~~~~~~~~~~~~~ 104 (299)
T PF00176_consen 54 ----------------------------PQRGEKKTLIVVPSSLLSQWKEEIEKWFDPD-SLRVIIYDGDSERRRLSKNQ 104 (299)
T ss_dssp ----------------------------TTSS-S-EEEEE-TTTHHHHHHHHHHHSGT--TS-EEEESSSCHHHHTTSSS
T ss_pred ----------------------------ccccccceeEeeccchhhhhhhhhccccccc-cccccccccccccccccccc
Confidence 0022235999999999999999999999643 57999999987 3334455
Q ss_pred cCCCcEEEechhhhhccCCCCCCCchhhhhhhcCcccCCcchhhhhhhhcccccccccccCCCCCCCCCCcccCCCCccc
Q 001840 430 LAKYDVVLTTYSIVTNEVPKQPSVDEEEADEKNGETYGLSSEFSVNKKRKKISNVSKRGKKGKKGNVNSSIDYGCGPLAK 509 (1007)
Q Consensus 430 l~~~dVVItSy~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~k~~~~~~k~~~~~~~~~~~~~L~~ 509 (1007)
...++++|+||+.+...... .....+..
T Consensus 105 ~~~~~vvi~ty~~~~~~~~~----------------------------------------------------~~~~~l~~ 132 (299)
T PF00176_consen 105 LPKYDVVITTYETLRKARKK----------------------------------------------------KDKEDLKQ 132 (299)
T ss_dssp CCCSSEEEEEHHHHH--TST----------------------------------------------------HTTHHHHT
T ss_pred cccceeeecccccccccccc----------------------------------------------------cccccccc
Confidence 68899999999999821000 00123666
Q ss_pred cceeEEEEccCcccCCcccHHHHHHHhcccCcEEEEeccCCCCChhHHHHHHHHHhcCCcchhHHHHHHcccCcccCchh
Q 001840 510 VGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRFLKYDPYAVYKSFYSTIKIPISRNSLH 589 (1007)
Q Consensus 510 ~~w~rVIlDEAH~iKN~~s~~~kal~~L~a~~r~lLTGTPi~N~l~DL~sll~fL~~~~~~~~~~F~~~~~~pi~~~~~~ 589 (1007)
+.|++|||||+|.+||..+..++++..|++.++|+|||||++|++.|+|++++||.++.+.+...|...+..+.......
T Consensus 133 ~~~~~vIvDEaH~~k~~~s~~~~~l~~l~~~~~~lLSgTP~~n~~~dl~~~l~~L~~~~~~~~~~f~~~~~~~~~~~~~~ 212 (299)
T PF00176_consen 133 IKWDRVIVDEAHRLKNKDSKRYKALRKLRARYRWLLSGTPIQNSLEDLYSLLRFLNPDPFSDRRSFKKWFYRPDKENSYE 212 (299)
T ss_dssp SEEEEEEETTGGGGTTTTSHHHHHHHCCCECEEEEE-SS-SSSGSHHHHHHHHHHCTTTCSSHHHHHHHTHHHHHTHHHH
T ss_pred ccceeEEEecccccccccccccccccccccceEEeeccccccccccccccchheeeccccccchhhhhhhhhhccccccc
Confidence 78999999999999999999999999999999999999999999999999999999999999999999886653334456
Q ss_pred HHHHHHHHHHHhhhhcccCcccCCCccccCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHHHhhcCCCcccHHHHHHH
Q 001840 590 GYKKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANILLM 669 (1007)
Q Consensus 590 ~~~~L~~~L~~~~lRRtk~~v~~g~~~~~LP~k~~~~v~v~ls~~er~lY~~l~~~~~~~~~~~~~~g~~~~~~~~il~~ 669 (1007)
...+|+.+++.+++||++.++.. .||+..+.++.++|+++|+++|+.+....+..+.... .........++..
T Consensus 213 ~~~~L~~~l~~~~~r~~~~d~~~-----~lp~~~~~~~~~~ls~~q~~~Y~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 285 (299)
T PF00176_consen 213 NIERLRELLSEFMIRRTKKDVEK-----ELPPKIEHVINVELSPEQRELYNELLKEARENLKQSS--RKKSKKLSSLLQI 285 (299)
T ss_dssp HHHHHHHHHCCCEECHCGGGGCT-----TSTCEEEEEEEEGG-HHHHHHHHHHHHHHGGCCTT-T----TCHHHHHHHHH
T ss_pred cccccccccchhhhhhhcccccc-----cCCceEEEEEEeCCCHHHHHHHHHHHHHHHHHHHhhc--ccchhhHHHHHHH
Confidence 78899999999999999999843 7999999999999999999999988776654433222 2345678899999
Q ss_pred HHHHHhhcCccccc
Q 001840 670 LLRLRQACDHPLLV 683 (1007)
Q Consensus 670 L~rLRq~~~hP~L~ 683 (1007)
+.+|||+|+||.|+
T Consensus 286 ~~~lr~~c~hp~l~ 299 (299)
T PF00176_consen 286 LKRLRQVCNHPYLV 299 (299)
T ss_dssp HHHHHHHHH-THHC
T ss_pred HHHHHHHhCCcccC
Confidence 99999999999874
No 21
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=100.00 E-value=5.2e-40 Score=385.08 Aligned_cols=398 Identities=27% Similarity=0.396 Sum_probs=302.5
Q ss_pred ccCchHHHHHHHHHHHhhhcCCCccCceeecCCCCchHHHHHHHHHhhccccccchhhhccccccccccCCCCCCCCCcC
Q 001840 273 VNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLDDDDDNGNAG 352 (1007)
Q Consensus 273 ~~LrpyQ~~~v~wml~~e~~~~~~~GGILADdmGLGKTiqaIali~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (1007)
..|.|||.+|++|+......+.+ +|||||||||||++++.+.......
T Consensus 294 g~L~~~qleGln~L~~~ws~~~~---~ilADEmgLgktVqsi~fl~sl~~~----------------------------- 341 (696)
T KOG0383|consen 294 GTLHPYQLEGLNWLRISWSPGVD---AILADEMGLGKTVQSIVFLYSLPKE----------------------------- 341 (696)
T ss_pred ccccccchhhhhhhhcccccCCC---cccchhhcCCceeeEEEEEeecccc-----------------------------
Confidence 57999999999999987765543 8999999999999999887543221
Q ss_pred cccccccCCCCCCCCCCcccccccccCCCCCCCceEEEcChhhHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCccccCC
Q 001840 353 LDKVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVELAK 432 (1007)
Q Consensus 353 ~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tLIV~P~sLl~QW~~Ei~k~~~~~~~l~vlv~~g~~r~~~~~~l~~ 432 (1007)
....++.||++|.+.+-+|.+|+..|.+ .+.+..|+|....+.......
T Consensus 342 ----------------------------~~~~~P~Lv~ap~sT~~nwe~e~~~wap---~~~vv~~~G~~k~r~iirepe 390 (696)
T KOG0383|consen 342 ----------------------------IHSPGPPLVVAPLSTIVNWEREFELWAP---SFYVVPYPGTAKSRAIIREPE 390 (696)
T ss_pred ----------------------------cCCCCCceeeccCccccCCCCchhccCC---CcccccCCCCccchhhhhccc
Confidence 1222568999999999999999999988 688888999876442111000
Q ss_pred C---c-EEEechhhhhccCCCCCCCchhhhhhhcCcccCCcchhhhhhhhcccccccccccCCCCCCCCCCcccCCCCcc
Q 001840 433 Y---D-VVLTTYSIVTNEVPKQPSVDEEEADEKNGETYGLSSEFSVNKKRKKISNVSKRGKKGKKGNVNSSIDYGCGPLA 508 (1007)
Q Consensus 433 ~---d-VVItSy~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~k~~~~~~k~~~~~~~~~~~~~L~ 508 (1007)
+ | -+-++-.+... + .....+...........+.+...+.
T Consensus 391 ~s~ed~~~~~~~~i~~~---------------------------------~----~~s~~k~~vl~~s~~~~~~~~~il~ 433 (696)
T KOG0383|consen 391 FSFEDSSIKSSPKISEM---------------------------------K----TESSAKFHVLLPSYETIEIDQSILF 433 (696)
T ss_pred ccccccccccCCccccc---------------------------------c----chhhcccccCCCchhhcccCHHHHh
Confidence 0 0 00000000000 0 0000011111111222333345588
Q ss_pred ccceeEEEEccCcccCCcccHHHHHHHhcccCcEEEEeccCCCCChhHHHHHHHHHhcCCcchhHHHHHHcccCcccCch
Q 001840 509 KVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRFLKYDPYAVYKSFYSTIKIPISRNSL 588 (1007)
Q Consensus 509 ~~~w~rVIlDEAH~iKN~~s~~~kal~~L~a~~r~lLTGTPi~N~l~DL~sll~fL~~~~~~~~~~F~~~~~~pi~~~~~ 588 (1007)
.+.|..+|+||+|.++|..+...+.+......++++|||||.+|++.+|+++|+||.++.|.+..+|.+.|..- ...
T Consensus 434 ~v~w~~livde~~rlkn~~s~~f~~l~~~~~~~~~lltgtPlqnn~~el~~ll~flt~~~~~~~~~f~e~~~d~---~~~ 510 (696)
T KOG0383|consen 434 SVQWGLLIVDEAHRLKNKQSKRFRVLTAYPIDSKLLLTGTPLQNNLEELFNLLNFLTPGRFNSLEWFLEEFHDI---SCE 510 (696)
T ss_pred hhhcceeEeechhhcccchhhhhhhccccccchhhhccCCcchhhhHHhhhcccccCcccccchhhhhhhcchh---hHH
Confidence 99999999999999999999999998888999999999999999999999999999999999999998887532 234
Q ss_pred hHHHHHHHHHHHhhhhcccCcccCCCccccCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHHHhhcCCCcccHHHHHH
Q 001840 589 HGYKKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANILL 668 (1007)
Q Consensus 589 ~~~~~L~~~L~~~~lRRtk~~v~~g~~~~~LP~k~~~~v~v~ls~~er~lY~~l~~~~~~~~~~~~~~g~~~~~~~~il~ 668 (1007)
...+.|+.++.++|+||.|.++++ +.|+|++-++.+.|++.|.+.|+.++..-...+.. ..+....+.
T Consensus 511 ~~~~~l~~l~~p~~lrr~k~d~l~-----~~P~Kte~i~~~~~~~~Q~~~yk~~~t~n~~~l~~-------~~~~~s~~n 578 (696)
T KOG0383|consen 511 EQIKKLHLLLCPHMLRRLKLDVLK-----PMPLKTELIGRVELSPCQKKYYKKILTRNWQGLLA-------GVHQYSLLN 578 (696)
T ss_pred HHHHhhccccCchhhhhhhhhhcc-----CCCccceeEEEEecCHHHHHHHHHHHcCChHHHhh-------cchhHHHHH
Confidence 667889999999999999999997 79999999999999999999999987755443322 234456788
Q ss_pred HHHHHHhhcCcccccccccccccccchHHHhhcCChHHHHHHHhhcccccccccccCCCCCCccccccCcccchhhhhhh
Q 001840 669 MLLRLRQACDHPLLVKEYDFDSVGKISGEMAKRLPRDMLIDLLSRLETSSAICCVCSDPPEDSVVTMCGHVFCYQCASEY 748 (1007)
Q Consensus 669 ~L~rLRq~~~hP~L~~~~~~~~~~~~~~e~~~~~~~~~~~~ll~~le~~~~~C~~c~d~~~~~v~t~CgH~~c~~ci~~~ 748 (1007)
.++.||+.|+||.++....... . .. ..+.+.
T Consensus 579 ~~mel~K~~~hpy~~~~~e~~~-~-----------~~--~~~~~~----------------------------------- 609 (696)
T KOG0383|consen 579 IVMELRKQCNHPYLSPLEEPLE-E-----------NG--EYLGSA----------------------------------- 609 (696)
T ss_pred HHHHHHHhhcCcccCccccccc-c-----------ch--HHHHHH-----------------------------------
Confidence 9999999999999875411000 0 00 000000
Q ss_pred ccCCCCCCCCcchhhcccccceecccccccccCCCCCCCCCCCcccccCCCcCcccchhhHHHHHHHHHhhhhcccccch
Q 001840 749 ITGDDNMCPAPRCKEQLGADVVFSKTTLKNCVSDDGGGSPTDSPFADKSGILDNEYISSKIRTVLDILHTQCELNTKCSI 828 (1007)
Q Consensus 749 ~~~~~~~cp~~~cr~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SsKl~~l~~lL~~~~~~~~~~~~ 828 (1007)
....+.|+..|...++++...++
T Consensus 610 -----------------------------------------------------l~k~~~k~~~l~~~~~~l~~~gh---- 632 (696)
T KOG0383|consen 610 -----------------------------------------------------LIKASGKLTLLLKMLKKLKSSGH---- 632 (696)
T ss_pred -----------------------------------------------------HHHHHHHHHHHHHHHHHHHhcch----
Confidence 01147899999999999888877
Q ss_pred hhhhhcccCCCCCccccCCCCCCCCeEEEEecchhHHHHHHHHHhhcCCeEEEecCCCChHHHHHHHHhhcc-Cccccee
Q 001840 829 VEIHDLAGSNGSSAVHSKSPIEGPIKSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNT-DREITVM 907 (1007)
Q Consensus 829 ~~~~~~~~~~~~~~~~~~~~~~~~~KvIIFsq~~~~ld~L~~~L~~~gi~~~~i~Gs~s~~~R~~~I~~F~~-~~~~~Vl 907 (1007)
||+||+|++.++|+|+.++...+ .|.++||..+..+|+.+|++||. +..-++|
T Consensus 633 -------------------------rvl~~~q~~~~ldlled~~~~~~-~~~r~dG~~~~~~rq~ai~~~n~~~~~~~cf 686 (696)
T KOG0383|consen 633 -------------------------RVLIFSQMIHMLDLLEDYLTYEG-KYERIDGPITGPERQAAIDRFNAPGSNQFCF 686 (696)
T ss_pred -------------------------hhHHHHHHHHHHHHhHHHHhccC-cceeccCCccchhhhhhccccCCCCccceEE
Confidence 99999999999999999999999 99999999999999999999995 4567899
Q ss_pred eeeccCcccc
Q 001840 908 LMSLKAGNLG 917 (1007)
Q Consensus 908 LlStkagg~G 917 (1007)
|+||+|||.|
T Consensus 687 llstra~g~g 696 (696)
T KOG0383|consen 687 LLSTRAGGLG 696 (696)
T ss_pred EeecccccCC
Confidence 9999999987
No 22
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=1.9e-36 Score=361.62 Aligned_cols=353 Identities=18% Similarity=0.242 Sum_probs=254.1
Q ss_pred cccCchHHHHHHHHHHHhhhcCCCccCceeecCCCCchHHHHHHHHHhhccccccchhhhccccccccccCCCCCCCCCc
Q 001840 272 SVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLDDDDDNGNA 351 (1007)
Q Consensus 272 ~~~LrpyQ~~~v~wml~~e~~~~~~~GGILADdmGLGKTiqaIali~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (1007)
.+.|||||.+++.||+... ..++|||...||.|||+++++++...
T Consensus 253 ~~~LRpYQ~eAl~~~~~~g----r~r~GIIvLPtGaGKTlvai~aa~~l------------------------------- 297 (732)
T TIGR00603 253 TTQIRPYQEKSLSKMFGNG----RARSGIIVLPCGAGKSLVGVTAACTV------------------------------- 297 (732)
T ss_pred CCCcCHHHHHHHHHHHhcC----CCCCcEEEeCCCCChHHHHHHHHHHh-------------------------------
Confidence 4679999999999997432 23579999999999999999888542
Q ss_pred CcccccccCCCCCCCCCCcccccccccCCCCCCCceEEEcChh-hHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCcccc
Q 001840 352 GLDKVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPAS-VLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVEL 430 (1007)
Q Consensus 352 ~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tLIV~P~s-Ll~QW~~Ei~k~~~~~~~l~vlv~~g~~r~~~~~~l 430 (1007)
.+++|||||.. ++.||.+||.+|+... ...+..|.|..+.. ..
T Consensus 298 --------------------------------~k~tLILvps~~Lv~QW~~ef~~~~~l~-~~~I~~~tg~~k~~---~~ 341 (732)
T TIGR00603 298 --------------------------------KKSCLVLCTSAVSVEQWKQQFKMWSTID-DSQICRFTSDAKER---FH 341 (732)
T ss_pred --------------------------------CCCEEEEeCcHHHHHHHHHHHHHhcCCC-CceEEEEecCcccc---cc
Confidence 13499999977 5899999999997432 35677788765432 12
Q ss_pred CCCcEEEechhhhhccCCCCCCCchhhhhhhcCcccCCcchhhhhhhhcccccccccccCCCCCCCCCCcccCCCCcccc
Q 001840 431 AKYDVVLTTYSIVTNEVPKQPSVDEEEADEKNGETYGLSSEFSVNKKRKKISNVSKRGKKGKKGNVNSSIDYGCGPLAKV 510 (1007)
Q Consensus 431 ~~~dVVItSy~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~k~~~~~~k~~~~~~~~~~~~~L~~~ 510 (1007)
...+|+|+||+++.+...+.... ......|...
T Consensus 342 ~~~~VvVtTYq~l~~~~~r~~~~-----------------------------------------------~~~l~~l~~~ 374 (732)
T TIGR00603 342 GEAGVVVSTYSMVAHTGKRSYES-----------------------------------------------EKVMEWLTNR 374 (732)
T ss_pred cCCcEEEEEHHHhhcccccchhh-----------------------------------------------hHHHHHhccc
Confidence 45789999999987542210000 0000114456
Q ss_pred ceeEEEEccCcccCCcccHHHHHHHhcccCcEEEEeccCCCCChhHHHHHHHHH-hcCCcchhHHHHHHcccCcccCchh
Q 001840 511 GWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRFL-KYDPYAVYKSFYSTIKIPISRNSLH 589 (1007)
Q Consensus 511 ~w~rVIlDEAH~iKN~~s~~~kal~~L~a~~r~lLTGTPi~N~l~DL~sll~fL-~~~~~~~~~~F~~~~~~pi~~~~~~ 589 (1007)
.|++||+||||++.+ ....+.+..+++.+||+|||||+.+. +.+..+.+| +|..|. . .|.
T Consensus 375 ~~gLII~DEvH~lpA--~~fr~il~~l~a~~RLGLTATP~ReD--~~~~~L~~LiGP~vye-~-~~~------------- 435 (732)
T TIGR00603 375 EWGLILLDEVHVVPA--AMFRRVLTIVQAHCKLGLTATLVRED--DKITDLNFLIGPKLYE-A-NWM------------- 435 (732)
T ss_pred cCCEEEEEccccccH--HHHHHHHHhcCcCcEEEEeecCcccC--CchhhhhhhcCCeeee-c-CHH-------------
Confidence 799999999999964 33445677789999999999999875 334444443 333221 0 010
Q ss_pred HHHHHHHHHHHhhhhcccCcccCCCccccCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHHHhhcCCCcccHHHHHHH
Q 001840 590 GYKKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANILLM 669 (1007)
Q Consensus 590 ~~~~L~~~L~~~~lRRtk~~v~~g~~~~~LP~k~~~~v~v~ls~~er~lY~~l~~~~~~~~~~~~~~g~~~~~~~~il~~ 669 (1007)
.+++ .| -|.+.....++|+|++++...|...... . ..+
T Consensus 436 ------eLi~------------~G----~LA~~~~~ev~v~~t~~~~~~yl~~~~~---------------~---k~~-- 473 (732)
T TIGR00603 436 ------ELQK------------KG----FIANVQCAEVWCPMTPEFYREYLRENSR---------------K---RML-- 473 (732)
T ss_pred ------HHHh------------CC----ccccceEEEEEecCCHHHHHHHHHhcch---------------h---hhH--
Confidence 1111 11 3556666789999998765554211000 0 000
Q ss_pred HHHHHhhcCcccccccccccccccchHHHhhcCChHHHHHHHhhcccccccccccCCCCCCccccccCcccchhhhhhhc
Q 001840 670 LLRLRQACDHPLLVKEYDFDSVGKISGEMAKRLPRDMLIDLLSRLETSSAICCVCSDPPEDSVVTMCGHVFCYQCASEYI 749 (1007)
Q Consensus 670 L~rLRq~~~hP~L~~~~~~~~~~~~~~e~~~~~~~~~~~~ll~~le~~~~~C~~c~d~~~~~v~t~CgH~~c~~ci~~~~ 749 (1007)
| .+
T Consensus 474 ---l--~~------------------------------------------------------------------------ 476 (732)
T TIGR00603 474 ---L--YV------------------------------------------------------------------------ 476 (732)
T ss_pred ---H--hh------------------------------------------------------------------------
Confidence 0 00
Q ss_pred cCCCCCCCCcchhhcccccceecccccccccCCCCCCCCCCCcccccCCCcCcccchhhHHHHHHHHHhhhhcccccchh
Q 001840 750 TGDDNMCPAPRCKEQLGADVVFSKTTLKNCVSDDGGGSPTDSPFADKSGILDNEYISSKIRTVLDILHTQCELNTKCSIV 829 (1007)
Q Consensus 750 ~~~~~~cp~~~cr~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SsKl~~l~~lL~~~~~~~~~~~~~ 829 (1007)
....|+.++..+++.+...+.
T Consensus 477 ------------------------------------------------------~np~K~~~~~~Li~~he~~g~----- 497 (732)
T TIGR00603 477 ------------------------------------------------------MNPNKFRACQFLIRFHEQRGD----- 497 (732)
T ss_pred ------------------------------------------------------hChHHHHHHHHHHHHHhhcCC-----
Confidence 024588888888876644444
Q ss_pred hhhhcccCCCCCccccCCCCCCCCeEEEEecchhHHHHHHHHHhhcCCeEEEecCCCChHHHHHHHHhhccCcccceeee
Q 001840 830 EIHDLAGSNGSSAVHSKSPIEGPIKSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLM 909 (1007)
Q Consensus 830 ~~~~~~~~~~~~~~~~~~~~~~~~KvIIFsq~~~~ld~L~~~L~~~gi~~~~i~Gs~s~~~R~~~I~~F~~~~~~~VlLl 909 (1007)
|+||||+++..++.+...| +. ..|+|.|+..+|.+++++|+.++.+.+|++
T Consensus 498 ------------------------kiLVF~~~~~~l~~~a~~L---~~--~~I~G~ts~~ER~~il~~Fr~~~~i~vLv~ 548 (732)
T TIGR00603 498 ------------------------KIIVFSDNVFALKEYAIKL---GK--PFIYGPTSQQERMQILQNFQHNPKVNTIFL 548 (732)
T ss_pred ------------------------eEEEEeCCHHHHHHHHHHc---CC--ceEECCCCHHHHHHHHHHHHhCCCccEEEE
Confidence 9999999999988888877 33 458999999999999999997767888887
Q ss_pred eccCcccccccccCCEEEEecCCC-CCChhHHHhHhhhccCCcc-----cEEEEEEEeCCCHHHHH
Q 001840 910 SLKAGNLGLNMVAASHVILLDLWW-NPTTEDQAVDRAHRIGQTR-----PVTVTRLTIRDTVEDRI 969 (1007)
Q Consensus 910 Stkagg~GLNL~~A~~VI~~Dp~W-Np~~e~QaigRi~RiGQ~k-----~V~VyrLi~~~TIEe~I 969 (1007)
| ++|++|+||+.|++||++++++ ++..+.||+||+.|.+..+ +.++|.|+++||.|+..
T Consensus 549 S-kVgdeGIDlP~a~vvI~~s~~~gS~~q~iQRlGRilR~~~~~~~~~~~A~fY~lVs~dT~E~~~ 613 (732)
T TIGR00603 549 S-KVGDTSIDLPEANVLIQISSHYGSRRQEAQRLGRILRAKKGSDAEEYNAFFYSLVSKDTQEMYY 613 (732)
T ss_pred e-cccccccCCCCCCEEEEeCCCCCCHHHHHHHhcccccCCCCCccccccceEEEEecCCchHHHH
Confidence 7 9999999999999999999986 9999999999999998764 48999999999999987
No 23
>PRK13766 Hef nuclease; Provisional
Probab=100.00 E-value=4.8e-32 Score=340.57 Aligned_cols=144 Identities=21% Similarity=0.246 Sum_probs=125.2
Q ss_pred chhhHHHHHHHHHhhhhcccccchhhhhhcccCCCCCccccCCCCCCCCeEEEEecchhHHHHHHHHHhhcCCeEEEecC
Q 001840 805 ISSKIRTVLDILHTQCELNTKCSIVEIHDLAGSNGSSAVHSKSPIEGPIKSIVFSQWTRMLDLVENSLNQHCIQYRRLDG 884 (1007)
Q Consensus 805 ~SsKl~~l~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvIIFsq~~~~ld~L~~~L~~~gi~~~~i~G 884 (1007)
..+|++.|.++|.+...... +.|+||||++..+++.|.+.|...|+.+..++|
T Consensus 345 ~~pK~~~L~~il~~~~~~~~---------------------------~~kvlIF~~~~~t~~~L~~~L~~~~~~~~~~~g 397 (773)
T PRK13766 345 EHPKLEKLREIVKEQLGKNP---------------------------DSRIIVFTQYRDTAEKIVDLLEKEGIKAVRFVG 397 (773)
T ss_pred CChHHHHHHHHHHHHHhcCC---------------------------CCeEEEEeCcHHHHHHHHHHHHhCCCceEEEEc
Confidence 36899999999988764221 349999999999999999999999999999998
Q ss_pred C--------CChHHHHHHHHhhccCcccceeeeeccCcccccccccCCEEEEecCCCCCChhHHHhHhhhccCCcccEEE
Q 001840 885 T--------MSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTV 956 (1007)
Q Consensus 885 s--------~s~~~R~~~I~~F~~~~~~~VlLlStkagg~GLNL~~A~~VI~~Dp~WNp~~e~QaigRi~RiGQ~k~V~V 956 (1007)
. ++..+|.+++++|+++ ++.||+ +|.++++|+|++.+++||+|||+||+.++.|++||++|.|+ +.|
T Consensus 398 ~~~~~~~~~~~~~~r~~~~~~F~~g-~~~vLv-aT~~~~eGldi~~~~~VI~yd~~~s~~r~iQR~GR~gR~~~---~~v 472 (773)
T PRK13766 398 QASKDGDKGMSQKEQIEILDKFRAG-EFNVLV-STSVAEEGLDIPSVDLVIFYEPVPSEIRSIQRKGRTGRQEE---GRV 472 (773)
T ss_pred cccccccCCCCHHHHHHHHHHHHcC-CCCEEE-ECChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccCcCCC---CEE
Confidence 7 8889999999999976 566665 66899999999999999999999999999998888888775 778
Q ss_pred EEEEeCCCHHHHHHHHHHHHHHHH
Q 001840 957 TRLTIRDTVEDRILKLQDDKRKMV 980 (1007)
Q Consensus 957 yrLi~~~TIEe~I~~lq~~K~~li 980 (1007)
|.|+.++|+||.++....+|.+.+
T Consensus 473 ~~l~~~~t~ee~~y~~~~~ke~~~ 496 (773)
T PRK13766 473 VVLIAKGTRDEAYYWSSRRKEKKM 496 (773)
T ss_pred EEEEeCCChHHHHHHHhhHHHHHH
Confidence 999999999999987776665544
No 24
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=99.95 E-value=5.8e-25 Score=244.38 Aligned_cols=463 Identities=19% Similarity=0.182 Sum_probs=292.2
Q ss_pred cccCchHHHHHHHHHHHhhhcCCCccCceeecCCCCchHHHHHHHHHhhccccccchhhhccccccccccCCCCCCCCCc
Q 001840 272 SVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLDDDDDNGNA 351 (1007)
Q Consensus 272 ~~~LrpyQ~~~v~wml~~e~~~~~~~GGILADdmGLGKTiqaIali~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (1007)
.++-|.||..-++-.+.+ ..+++-.+|||||++|+.+|+.....
T Consensus 13 ~ie~R~YQ~~i~a~al~~--------NtLvvlPTGLGKT~IA~~V~~~~l~~---------------------------- 56 (542)
T COG1111 13 TIEPRLYQLNIAAKALFK--------NTLVVLPTGLGKTFIAAMVIANRLRW---------------------------- 56 (542)
T ss_pred cccHHHHHHHHHHHHhhc--------CeEEEecCCccHHHHHHHHHHHHHHh----------------------------
Confidence 357899999988877754 25999999999999998888653211
Q ss_pred CcccccccCCCCCCCCCCcccccccccCCCCCCCceEEEcCh-hhHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCC-ccc
Q 001840 352 GLDKVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPA-SVLRQWARELEDKVPDKAALSVLIYHGGSRTKD-PVE 429 (1007)
Q Consensus 352 ~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tLIV~P~-sLl~QW~~Ei~k~~~~~~~l~vlv~~g~~r~~~-~~~ 429 (1007)
.+ +.+|+++|+ .|+.|-..-+.+.+.-+ ...+..+.|..+... ...
T Consensus 57 ------------------------------~~-~kvlfLAPTKPLV~Qh~~~~~~v~~ip-~~~i~~ltGev~p~~R~~~ 104 (542)
T COG1111 57 ------------------------------FG-GKVLFLAPTKPLVLQHAEFCRKVTGIP-EDEIAALTGEVRPEEREEL 104 (542)
T ss_pred ------------------------------cC-CeEEEecCCchHHHHHHHHHHHHhCCC-hhheeeecCCCChHHHHHH
Confidence 11 258999995 59999999999887643 567888999876553 356
Q ss_pred cCCCcEEEechhhhhccCCCCCCCchhhhhhhcCcccCCcchhhhhhhhcccccccccccCCCCCCCCCCcccCCCCccc
Q 001840 430 LAKYDVVLTTYSIVTNEVPKQPSVDEEEADEKNGETYGLSSEFSVNKKRKKISNVSKRGKKGKKGNVNSSIDYGCGPLAK 509 (1007)
Q Consensus 430 l~~~dVVItSy~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~k~~~~~~k~~~~~~~~~~~~~L~~ 509 (1007)
+.+..|++.|.+++.|++.. +.+..
T Consensus 105 w~~~kVfvaTPQvveNDl~~-------------------------------------------------------Grid~ 129 (542)
T COG1111 105 WAKKKVFVATPQVVENDLKA-------------------------------------------------------GRIDL 129 (542)
T ss_pred HhhCCEEEeccHHHHhHHhc-------------------------------------------------------CccCh
Confidence 78899999999999987533 22444
Q ss_pred cceeEEEEccCcccCCcccHHHHHHHhc---ccCcEEEEeccCCCCChhHHHHHHHHHhcCCcchhHHHHHHcccCcccC
Q 001840 510 VGWFRVVLDEAQTIKNHRTQVARACCSL---RAKRRWCLSGTPIQNSIDDLYSYFRFLKYDPYAVYKSFYSTIKIPISRN 586 (1007)
Q Consensus 510 ~~w~rVIlDEAH~iKN~~s~~~kal~~L---~a~~r~lLTGTPi~N~l~DL~sll~fL~~~~~~~~~~F~~~~~~pi~~~ 586 (1007)
-.+.+||+||||+.-+..+-++-+=..+ +..+.++|||||- ++.+.+...+.=|+.+-
T Consensus 130 ~dv~~lifDEAHRAvGnyAYv~Va~~y~~~~k~~~ilgLTASPG-s~~ekI~eV~~nLgIe~------------------ 190 (542)
T COG1111 130 DDVSLLIFDEAHRAVGNYAYVFVAKEYLRSAKNPLILGLTASPG-SDLEKIQEVVENLGIEK------------------ 190 (542)
T ss_pred HHceEEEechhhhccCcchHHHHHHHHHHhccCceEEEEecCCC-CCHHHHHHHHHhCCcce------------------
Confidence 5678999999999866555444333233 2336899999993 33343443343333321
Q ss_pred chhHHHHHHHHHHHhhhhcccCc--ccCCCccccCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHHHhhcCCCccc--
Q 001840 587 SLHGYKKLQAVLRAIMLRRTKGT--FIDGQPIINLPPKTISLTKVDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQN-- 662 (1007)
Q Consensus 587 ~~~~~~~L~~~L~~~~lRRtk~~--v~~g~~~~~LP~k~~~~v~v~ls~~er~lY~~l~~~~~~~~~~~~~~g~~~~~-- 662 (1007)
+.-||-++ |.. .+-++.++.+.|+++++-.++-+.+..-....++.+.+.|-....
T Consensus 191 ---------------vevrTE~d~DV~~-----Yv~~~kve~ikV~lp~e~~~ir~~l~~~l~~~Lk~L~~~g~~~~~~~ 250 (542)
T COG1111 191 ---------------VEVRTEEDPDVRP-----YVKKIKVEWIKVDLPEEIKEIRDLLRDALKPRLKPLKELGVIESSSP 250 (542)
T ss_pred ---------------EEEecCCCccHHH-----hhccceeEEEeccCcHHHHHHHHHHHHHHHHHHHHHHHcCceeccCc
Confidence 11222221 211 355677888999999887776666655555555555444432221
Q ss_pred --HHHHHHHH-HHHHhhcCcc-cccccccc-ccccc--chHHHhhcCChHHHHHHHhhcccccccccccCCCCCCccccc
Q 001840 663 --YANILLML-LRLRQACDHP-LLVKEYDF-DSVGK--ISGEMAKRLPRDMLIDLLSRLETSSAICCVCSDPPEDSVVTM 735 (1007)
Q Consensus 663 --~~~il~~L-~rLRq~~~hP-~L~~~~~~-~~~~~--~~~e~~~~~~~~~~~~ll~~le~~~~~C~~c~d~~~~~v~t~ 735 (1007)
...++.+. .++....+.. .+...... ...-+ -..|+.....-+.+..++.+++.....-..
T Consensus 251 ~~~kdl~~~~~~~~~~a~~~~~~~~~~l~~~a~~~kl~~a~elletqGi~~~~~Yl~~l~e~~~~~~s------------ 318 (542)
T COG1111 251 VSKKDLLELRQIRLIMAKNEDSDKFRLLSVLAEAIKLAHALELLETQGIRPFYQYLEKLEEEATKGGS------------ 318 (542)
T ss_pred ccHhHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHhcccch------------
Confidence 12222222 1222111100 00000000 00000 001222222333444455544311100000
Q ss_pred cCcccchhhhhhhccCCCCCCCCcchhhcccccceecccccccccCCCCCCCCCCCcccccCCCcCcccchhhHHHHHHH
Q 001840 736 CGHVFCYQCASEYITGDDNMCPAPRCKEQLGADVVFSKTTLKNCVSDDGGGSPTDSPFADKSGILDNEYISSKIRTVLDI 815 (1007)
Q Consensus 736 CgH~~c~~ci~~~~~~~~~~cp~~~cr~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SsKl~~l~~l 815 (1007)
.-...+-.+..+... +..+ ..........+|+..+.++
T Consensus 319 ------------------------k~a~~l~~d~~~~~a-l~~~-----------------~~~~~~~v~HPKl~~l~ei 356 (542)
T COG1111 319 ------------------------KAAKSLLADPYFKRA-LRLL-----------------IRADESGVEHPKLEKLREI 356 (542)
T ss_pred ------------------------HHHHHHhcChhhHHH-HHHH-----------------HHhccccCCCccHHHHHHH
Confidence 000000000000000 0000 0001223467899999999
Q ss_pred HHhhhhcccccchhhhhhcccCCCCCccccCCCCCCCCeEEEEecchhHHHHHHHHHhhcCCeEE-EecC--------CC
Q 001840 816 LHTQCELNTKCSIVEIHDLAGSNGSSAVHSKSPIEGPIKSIVFSQWTRMLDLVENSLNQHCIQYR-RLDG--------TM 886 (1007)
Q Consensus 816 L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvIIFsq~~~~ld~L~~~L~~~gi~~~-~i~G--------s~ 886 (1007)
|++.++... +.++|||++|.++++.|...|.+.|+... ++-| +|
T Consensus 357 lke~~~k~~---------------------------~~RvIVFT~yRdTae~i~~~L~~~~~~~~~rFiGQa~r~~~~GM 409 (542)
T COG1111 357 LKEQLEKNG---------------------------DSRVIVFTEYRDTAEEIVNFLKKIGIKARVRFIGQASREGDKGM 409 (542)
T ss_pred HHHHHhcCC---------------------------CceEEEEehhHhHHHHHHHHHHhcCCcceeEEeecccccccccc
Confidence 999886543 34999999999999999999999988775 5544 59
Q ss_pred ChHHHHHHHHhhccCcccceeeeeccCcccccccccCCEEEEecCCCCCChhHHHhHhhhccCCcccEEEEEEEeCCCHH
Q 001840 887 SLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVE 966 (1007)
Q Consensus 887 s~~~R~~~I~~F~~~~~~~VlLlStkagg~GLNL~~A~~VI~~Dp~WNp~~e~QaigRi~RiGQ~k~V~VyrLi~~~TIE 966 (1007)
++++..++|++|+++ ++.||+ +|..|-+||++...+.||||||-=+|.+..||.||.+|- +.=.||-|+++||-|
T Consensus 410 sQkeQ~eiI~~Fr~G-e~nVLV-aTSVgEEGLDIp~vDlVifYEpvpSeIR~IQR~GRTGR~---r~Grv~vLvt~gtrd 484 (542)
T COG1111 410 SQKEQKEIIDQFRKG-EYNVLV-ATSVGEEGLDIPEVDLVIFYEPVPSEIRSIQRKGRTGRK---RKGRVVVLVTEGTRD 484 (542)
T ss_pred CHHHHHHHHHHHhcC-CceEEE-EcccccccCCCCcccEEEEecCCcHHHHHHHhhCccccC---CCCeEEEEEecCchH
Confidence 999999999999976 777777 679999999999999999999999999999999988774 777888899999999
Q ss_pred HHHHHHHHHHHHHHHH
Q 001840 967 DRILKLQDDKRKMVAS 982 (1007)
Q Consensus 967 e~I~~lq~~K~~li~~ 982 (1007)
+.-+....+|.+.+..
T Consensus 485 eayy~~s~rke~~m~e 500 (542)
T COG1111 485 EAYYYSSRRKEQKMIE 500 (542)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9888777777554433
No 25
>PHA02558 uvsW UvsW helicase; Provisional
Probab=99.95 E-value=2.9e-25 Score=264.36 Aligned_cols=111 Identities=14% Similarity=0.091 Sum_probs=101.4
Q ss_pred eEEEEecchhHHHHHHHHHhhcCCeEEEecCCCChHHHHHHHHhhccCcccceeeeeccCcccccccccCCEEEEecCCC
Q 001840 854 KSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDLWW 933 (1007)
Q Consensus 854 KvIIFsq~~~~ld~L~~~L~~~gi~~~~i~Gs~s~~~R~~~I~~F~~~~~~~VlLlStkagg~GLNL~~A~~VI~~Dp~W 933 (1007)
++|||+..+..++.|.+.|...|+++..++|+++.++|.++++.|+++ ...|||.|.+..++|+++...++||+++|.-
T Consensus 346 ~~lV~~~~~~h~~~L~~~L~~~g~~v~~i~G~~~~~eR~~i~~~~~~~-~~~vLvaT~~~l~eG~Dip~ld~vIl~~p~~ 424 (501)
T PHA02558 346 NTFVMFKYVEHGKPLYEMLKKVYDKVYYVSGEVDTEDRNEMKKIAEGG-KGIIIVASYGVFSTGISIKNLHHVIFAHPSK 424 (501)
T ss_pred CEEEEEEEHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHhCC-CCeEEEEEcceeccccccccccEEEEecCCc
Confidence 889999999999999999999999999999999999999999999854 6678888889999999999999999999999
Q ss_pred CCChhHHHhHhhhccCCcc-cEEEEEEEeCCCH
Q 001840 934 NPTTEDQAVDRAHRIGQTR-PVTVTRLTIRDTV 965 (1007)
Q Consensus 934 Np~~e~QaigRi~RiGQ~k-~V~VyrLi~~~TI 965 (1007)
+...+.|++||++|.|..| .+.||.|+-.-.+
T Consensus 425 s~~~~~QriGR~~R~~~~K~~~~i~D~vD~~~~ 457 (501)
T PHA02558 425 SKIIVLQSIGRVLRKHGSKSIATVWDIIDDLSV 457 (501)
T ss_pred chhhhhhhhhccccCCCCCceEEEEEeeccccc
Confidence 9999999999999999876 4999999865443
No 26
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=99.94 E-value=1.3e-24 Score=253.82 Aligned_cols=367 Identities=21% Similarity=0.225 Sum_probs=257.1
Q ss_pred cccCchHHHHHHHHHHHhhhcCCCccCceeecCCCCchHHHHHHHHHhhccccccchhhhccccccccccCCCCCCCCCc
Q 001840 272 SVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLDDDDDNGNA 351 (1007)
Q Consensus 272 ~~~LrpyQ~~~v~wml~~e~~~~~~~GGILADdmGLGKTiqaIali~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (1007)
...|||||.+++.-+...... .+.|++.-.+|.|||+.++.+|....
T Consensus 34 ~~~lr~yQ~~al~a~~~~~~~---~~~gvivlpTGaGKT~va~~~~~~~~------------------------------ 80 (442)
T COG1061 34 EFELRPYQEEALDALVKNRRT---ERRGVIVLPTGAGKTVVAAEAIAELK------------------------------ 80 (442)
T ss_pred CCCCcHHHHHHHHHHHhhccc---CCceEEEeCCCCCHHHHHHHHHHHhc------------------------------
Confidence 568999999999877653221 24589999999999999999986532
Q ss_pred CcccccccCCCCCCCCCCcccccccccCCCCCCCceEEEcChh-hHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCcccc
Q 001840 352 GLDKVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPAS-VLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVEL 430 (1007)
Q Consensus 352 ~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tLIV~P~s-Ll~QW~~Ei~k~~~~~~~l~vlv~~g~~r~~~~~~l 430 (1007)
..+|||||.. |+.||.+.+.+++.. ...+-.|.|.......
T Consensus 81 ---------------------------------~~~Lvlv~~~~L~~Qw~~~~~~~~~~--~~~~g~~~~~~~~~~~--- 122 (442)
T COG1061 81 ---------------------------------RSTLVLVPTKELLDQWAEALKKFLLL--NDEIGIYGGGEKELEP--- 122 (442)
T ss_pred ---------------------------------CCEEEEECcHHHHHHHHHHHHHhcCC--ccccceecCceeccCC---
Confidence 1299999976 789999889888763 1245556665543222
Q ss_pred CCCcEEEechhhhhccCCCCCCCchhhhhhhcCcccCCcchhhhhhhhcccccccccccCCCCCCCCCCcccCCCCcccc
Q 001840 431 AKYDVVLTTYSIVTNEVPKQPSVDEEEADEKNGETYGLSSEFSVNKKRKKISNVSKRGKKGKKGNVNSSIDYGCGPLAKV 510 (1007)
Q Consensus 431 ~~~dVVItSy~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~k~~~~~~k~~~~~~~~~~~~~L~~~ 510 (1007)
.+|+|.||+++.+.... ..+..-
T Consensus 123 --~~i~vat~qtl~~~~~l-------------------------------------------------------~~~~~~ 145 (442)
T COG1061 123 --AKVTVATVQTLARRQLL-------------------------------------------------------DEFLGN 145 (442)
T ss_pred --CcEEEEEhHHHhhhhhh-------------------------------------------------------hhhccc
Confidence 57999999999864100 013333
Q ss_pred ceeEEEEccCcccCCcccHHHHHHHhcccCc-EEEEeccCCCCChhHHHHHHHHHhcCCcchhHHHHHHcccCcccCchh
Q 001840 511 GWFRVVLDEAQTIKNHRTQVARACCSLRAKR-RWCLSGTPIQNSIDDLYSYFRFLKYDPYAVYKSFYSTIKIPISRNSLH 589 (1007)
Q Consensus 511 ~w~rVIlDEAH~iKN~~s~~~kal~~L~a~~-r~lLTGTPi~N~l~DL~sll~fL~~~~~~~~~~F~~~~~~pi~~~~~~ 589 (1007)
.|++||+||+|++...... +.+..+.+.+ ++.|||||....-..+.-++.++.+-.|...
T Consensus 146 ~~~liI~DE~Hh~~a~~~~--~~~~~~~~~~~~LGLTATp~R~D~~~~~~l~~~~g~~vy~~~----------------- 206 (442)
T COG1061 146 EFGLIIFDEVHHLPAPSYR--RILELLSAAYPRLGLTATPEREDGGRIGDLFDLIGPIVYEVS----------------- 206 (442)
T ss_pred ccCEEEEEccccCCcHHHH--HHHHhhhcccceeeeccCceeecCCchhHHHHhcCCeEeecC-----------------
Confidence 6999999999998754333 3444456667 9999999985544455555555543211100
Q ss_pred HHHHHHHHHHHhhhhcccCcccCCCccccCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHHHhhcCCCcccHHHHHHH
Q 001840 590 GYKKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANILLM 669 (1007)
Q Consensus 590 ~~~~L~~~L~~~~lRRtk~~v~~g~~~~~LP~k~~~~v~v~ls~~er~lY~~l~~~~~~~~~~~~~~g~~~~~~~~il~~ 669 (1007)
+..++ .+| .|.|.....+.+.++..+...|............... .
T Consensus 207 ----~~~li------------~~g----~Lap~~~~~i~~~~t~~~~~~~~~~~~~~~~~~~~~~---~----------- 252 (442)
T COG1061 207 ----LKELI------------DEG----YLAPYKYVEIKVTLTEDEEREYAKESARFRELLRARG---T----------- 252 (442)
T ss_pred ----HHHHH------------hCC----CccceEEEEEEeccchHHHHHhhhhhhhhhhhhhhhh---h-----------
Confidence 01111 111 5778888889998999999888765443322211100 0
Q ss_pred HHHHHhhcCcccccccccccccccchHHHhhcCChHHHHHHHhhcccccccccccCCCCCCccccccCcccchhhhhhhc
Q 001840 670 LLRLRQACDHPLLVKEYDFDSVGKISGEMAKRLPRDMLIDLLSRLETSSAICCVCSDPPEDSVVTMCGHVFCYQCASEYI 749 (1007)
Q Consensus 670 L~rLRq~~~hP~L~~~~~~~~~~~~~~e~~~~~~~~~~~~ll~~le~~~~~C~~c~d~~~~~v~t~CgH~~c~~ci~~~~ 749 (1007)
++. .
T Consensus 253 ---~~~--------------------------------~----------------------------------------- 256 (442)
T COG1061 253 ---LRA--------------------------------E----------------------------------------- 256 (442)
T ss_pred ---hhH--------------------------------H-----------------------------------------
Confidence 000 0
Q ss_pred cCCCCCCCCcchhhcccccceecccccccccCCCCCCCCCCCcccccCCCcCcccchhhHHHHHHHHHhhhhcccccchh
Q 001840 750 TGDDNMCPAPRCKEQLGADVVFSKTTLKNCVSDDGGGSPTDSPFADKSGILDNEYISSKIRTVLDILHTQCELNTKCSIV 829 (1007)
Q Consensus 750 ~~~~~~cp~~~cr~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SsKl~~l~~lL~~~~~~~~~~~~~ 829 (1007)
.|.. ........|+..+..++..+. .+.
T Consensus 257 ----------~~~~------------------------------------~~~~~~~~~~~~~~~~~~~~~-~~~----- 284 (442)
T COG1061 257 ----------NEAR------------------------------------RIAIASERKIAAVRGLLLKHA-RGD----- 284 (442)
T ss_pred ----------HHHH------------------------------------HHhhccHHHHHHHHHHHHHhc-CCC-----
Confidence 0000 000013557777777776654 333
Q ss_pred hhhhcccCCCCCccccCCCCCCCCeEEEEecchhHHHHHHHHHhhcCCeEEEecCCCChHHHHHHHHhhccCcccceeee
Q 001840 830 EIHDLAGSNGSSAVHSKSPIEGPIKSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLM 909 (1007)
Q Consensus 830 ~~~~~~~~~~~~~~~~~~~~~~~~KvIIFsq~~~~ld~L~~~L~~~gi~~~~i~Gs~s~~~R~~~I~~F~~~~~~~VlLl 909 (1007)
+++||+.....+..+...|...|+ +..++|.++..+|.++++.|+.+. +.+|+
T Consensus 285 ------------------------~~lif~~~~~~a~~i~~~~~~~~~-~~~it~~t~~~eR~~il~~fr~g~-~~~lv- 337 (442)
T COG1061 285 ------------------------KTLIFASDVEHAYEIAKLFLAPGI-VEAITGETPKEEREAILERFRTGG-IKVLV- 337 (442)
T ss_pred ------------------------cEEEEeccHHHHHHHHHHhcCCCc-eEEEECCCCHHHHHHHHHHHHcCC-CCEEE-
Confidence 999999999999999999999988 889999999999999999999864 55555
Q ss_pred eccCcccccccccCCEEEEecCCCCCChhHHHhHhhhcc-CCccc--EEEEEEEeCCCHHHHHHHHHH
Q 001840 910 SLKAGNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRI-GQTRP--VTVTRLTIRDTVEDRILKLQD 974 (1007)
Q Consensus 910 Stkagg~GLNL~~A~~VI~~Dp~WNp~~e~QaigRi~Ri-GQ~k~--V~VyrLi~~~TIEe~I~~lq~ 974 (1007)
+.+++.+|+++..|+.+|++.|.=++..+.|++||+.|. ..+.. +..|-++..++.+..+.....
T Consensus 338 ~~~vl~EGvDiP~~~~~i~~~~t~S~~~~~Q~lGR~LR~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (442)
T COG1061 338 TVKVLDEGVDIPDADVLIILRPTGSRRLFIQRLGRGLRPAEGKEDTLALDYSLVPDDLGEEDIARRRR 405 (442)
T ss_pred EeeeccceecCCCCcEEEEeCCCCcHHHHHHHhhhhccCCCCCCceEEEEEEeecCcccccchhhhhh
Confidence 669999999999999999999999999999999999994 44443 788888888888887765554
No 27
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]
Probab=99.90 E-value=1.5e-22 Score=222.02 Aligned_cols=358 Identities=21% Similarity=0.280 Sum_probs=246.7
Q ss_pred CCCccCCCCCCcccccCchHHHHHHHHHHHhhhcCCCccCceeecCCCCchHHHHHHHHHhhccccccchhhhccccccc
Q 001840 259 QPKVEATLPDGLLSVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTE 338 (1007)
Q Consensus 259 ~~~~~~~~P~~~~~~~LrpyQ~~~v~wml~~e~~~~~~~GGILADdmGLGKTiqaIali~~~~~~~~~~~~~~~~~~~~~ 338 (1007)
+|+...++-| +..|||||...|..|.-.. ..|.||+.-..|.|||+..+..+...+
T Consensus 290 npdl~idLKP---st~iRpYQEksL~KMFGNg----RARSGiIVLPCGAGKtLVGvTAa~tik----------------- 345 (776)
T KOG1123|consen 290 NPDLDIDLKP---STQIRPYQEKSLSKMFGNG----RARSGIIVLPCGAGKTLVGVTAACTIK----------------- 345 (776)
T ss_pred CCCCCcCcCc---ccccCchHHHHHHHHhCCC----cccCceEEEecCCCCceeeeeeeeeec-----------------
Confidence 3455555555 3479999999999998543 247899999999999998876664322
Q ss_pred cccCCCCCCCCCcCcccccccCCCCCCCCCCcccccccccCCCCCCCceEEEcChhh-HHHHHHHHHHHcCCCCCeEEEE
Q 001840 339 ALNLDDDDDNGNAGLDKVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPASV-LRQWARELEDKVPDKAALSVLI 417 (1007)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tLIV~P~sL-l~QW~~Ei~k~~~~~~~l~vlv 417 (1007)
+..||+|-.+| +.||..+|..|.... .-.+..
T Consensus 346 ----------------------------------------------K~clvLcts~VSVeQWkqQfk~wsti~-d~~i~r 378 (776)
T KOG1123|consen 346 ----------------------------------------------KSCLVLCTSAVSVEQWKQQFKQWSTIQ-DDQICR 378 (776)
T ss_pred ----------------------------------------------ccEEEEecCccCHHHHHHHHHhhcccC-ccceEE
Confidence 34799999886 799999999998654 345666
Q ss_pred EeCCCCCCCccccCCCcEEEechhhhhccCCCCCCCchhhhhhhcCcccCCcchhhhhhhhcccccccccccCCCCCCCC
Q 001840 418 YHGGSRTKDPVELAKYDVVLTTYSIVTNEVPKQPSVDEEEADEKNGETYGLSSEFSVNKKRKKISNVSKRGKKGKKGNVN 497 (1007)
Q Consensus 418 ~~g~~r~~~~~~l~~~dVVItSy~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~k~~~~~~k~~~~ 497 (1007)
+....+...+ ...+||||||+++..--.+.. ..++
T Consensus 379 FTsd~Ke~~~---~~~gvvvsTYsMva~t~kRS~------eaek------------------------------------ 413 (776)
T KOG1123|consen 379 FTSDAKERFP---SGAGVVVTTYSMVAYTGKRSH------EAEK------------------------------------ 413 (776)
T ss_pred eeccccccCC---CCCcEEEEeeehhhhcccccH------HHHH------------------------------------
Confidence 6665543322 567899999999975322100 0000
Q ss_pred CCcccCCCCccccceeEEEEccCcccCCcccHHHHHHH-hcccCcEEEEeccCCCC--ChhHHHHHHHHH-hcCCcc-hh
Q 001840 498 SSIDYGCGPLAKVGWFRVVLDEAQTIKNHRTQVARACC-SLRAKRRWCLSGTPIQN--SIDDLYSYFRFL-KYDPYA-VY 572 (1007)
Q Consensus 498 ~~~~~~~~~L~~~~w~rVIlDEAH~iKN~~s~~~kal~-~L~a~~r~lLTGTPi~N--~l~DL~sll~fL-~~~~~~-~~ 572 (1007)
....|....|+++|+||+|.+- .++++-+. -+++..++.||||-+.. .+.| |+|| +|..|. +|
T Consensus 414 -----~m~~l~~~EWGllllDEVHvvP---A~MFRRVlsiv~aHcKLGLTATLvREDdKI~D----LNFLIGPKlYEAnW 481 (776)
T KOG1123|consen 414 -----IMDFLRGREWGLLLLDEVHVVP---AKMFRRVLSIVQAHCKLGLTATLVREDDKITD----LNFLIGPKLYEANW 481 (776)
T ss_pred -----HHHHHhcCeeeeEEeehhccch---HHHHHHHHHHHHHHhhccceeEEeeccccccc----cceeecchhhhccH
Confidence 0112667789999999999983 34444444 44888999999998754 3444 3455 343321 22
Q ss_pred HHHHHHcccCcccCchhHHHHHHHHHHHhhhhcccCcccCCCccccCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHH
Q 001840 573 KSFYSTIKIPISRNSLHGYKKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEWAFYKKLESDSLKKFKA 652 (1007)
Q Consensus 573 ~~F~~~~~~pi~~~~~~~~~~L~~~L~~~~lRRtk~~v~~g~~~~~LP~k~~~~v~v~ls~~er~lY~~l~~~~~~~~~~ 652 (1007)
.+... ++ .+....-..|+|+|+++-...|-. ...+
T Consensus 482 mdL~~-----------------------------kG---------hIA~VqCaEVWCpMt~eFy~eYL~---~~t~---- 516 (776)
T KOG1123|consen 482 MDLQK-----------------------------KG---------HIAKVQCAEVWCPMTPEFYREYLR---ENTR---- 516 (776)
T ss_pred HHHHh-----------------------------CC---------ceeEEeeeeeecCCCHHHHHHHHh---hhhh----
Confidence 21100 11 122233447899999865444432 1000
Q ss_pred HhhcCCCcccHHHHHHHHHHHHhhcCcccccccccccccccchHHHhhcCChHHHHHHHhhcccccccccccCCCCCCcc
Q 001840 653 FADAGTVNQNYANILLMLLRLRQACDHPLLVKEYDFDSVGKISGEMAKRLPRDMLIDLLSRLETSSAICCVCSDPPEDSV 732 (1007)
Q Consensus 653 ~~~~g~~~~~~~~il~~L~rLRq~~~hP~L~~~~~~~~~~~~~~e~~~~~~~~~~~~ll~~le~~~~~C~~c~d~~~~~v 732 (1007)
-|++ |.
T Consensus 517 --------------------kr~l-----Ly------------------------------------------------- 522 (776)
T KOG1123|consen 517 --------------------KRML-----LY------------------------------------------------- 522 (776)
T ss_pred --------------------hhhe-----ee-------------------------------------------------
Confidence 0000 00
Q ss_pred ccccCcccchhhhhhhccCCCCCCCCcchhhcccccceecccccccccCCCCCCCCCCCcccccCCCcCcccchhhHHHH
Q 001840 733 VTMCGHVFCYQCASEYITGDDNMCPAPRCKEQLGADVVFSKTTLKNCVSDDGGGSPTDSPFADKSGILDNEYISSKIRTV 812 (1007)
Q Consensus 733 ~t~CgH~~c~~ci~~~~~~~~~~cp~~~cr~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SsKl~~l 812 (1007)
.-...|++++
T Consensus 523 ----------------------------------------------------------------------vMNP~KFraC 532 (776)
T KOG1123|consen 523 ----------------------------------------------------------------------VMNPNKFRAC 532 (776)
T ss_pred ----------------------------------------------------------------------ecCcchhHHH
Confidence 0024688888
Q ss_pred HHHHHhhhhcccccchhhhhhcccCCCCCccccCCCCCCCCeEEEEecchhHHHHHHHHHhhcCCeEEEecCCCChHHHH
Q 001840 813 LDILHTQCELNTKCSIVEIHDLAGSNGSSAVHSKSPIEGPIKSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARD 892 (1007)
Q Consensus 813 ~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvIIFsq~~~~ld~L~~~L~~~gi~~~~i~Gs~s~~~R~ 892 (1007)
.-+|+.+...+. |+|||+...-.|...+..|. -+ .|.|.+++.+|.
T Consensus 533 qfLI~~HE~RgD-----------------------------KiIVFsDnvfALk~YAikl~---Kp--fIYG~Tsq~ERm 578 (776)
T KOG1123|consen 533 QFLIKFHERRGD-----------------------------KIIVFSDNVFALKEYAIKLG---KP--FIYGPTSQNERM 578 (776)
T ss_pred HHHHHHHHhcCC-----------------------------eEEEEeccHHHHHHHHHHcC---Cc--eEECCCchhHHH
Confidence 888888777665 99999998766665555443 33 578999999999
Q ss_pred HHHHhhccCcccceeeeeccCcccccccccCCEEEEecCCCCC-ChhHHHhHhhhccCCc----ccEEEEEEEeCCCHHH
Q 001840 893 RAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDLWWNP-TTEDQAVDRAHRIGQT----RPVTVTRLTIRDTVED 967 (1007)
Q Consensus 893 ~~I~~F~~~~~~~VlLlStkagg~GLNL~~A~~VI~~Dp~WNp-~~e~QaigRi~RiGQ~----k~V~VyrLi~~~TIEe 967 (1007)
+++++|+.++.+.-+++| ++|-+.++|..|+.+|-+....-. ..+.||.||+-|--.. -+++.|-|+.+||.|-
T Consensus 579 ~ILqnFq~n~~vNTIFlS-KVgDtSiDLPEAnvLIQISSH~GSRRQEAQRLGRILRAKk~~de~fnafFYSLVS~DTqEM 657 (776)
T KOG1123|consen 579 KILQNFQTNPKVNTIFLS-KVGDTSIDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKRNDEEFNAFFYSLVSKDTQEM 657 (776)
T ss_pred HHHHhcccCCccceEEEe-eccCccccCCcccEEEEEcccccchHHHHHHHHHHHHHhhcCccccceeeeeeeecchHHH
Confidence 999999999999988888 999999999999999999887654 4678999999997533 2499999999999885
Q ss_pred H
Q 001840 968 R 968 (1007)
Q Consensus 968 ~ 968 (1007)
.
T Consensus 658 ~ 658 (776)
T KOG1123|consen 658 Y 658 (776)
T ss_pred H
Confidence 4
No 28
>PTZ00110 helicase; Provisional
Probab=99.88 E-value=1e-20 Score=227.05 Aligned_cols=106 Identities=17% Similarity=0.226 Sum_probs=95.8
Q ss_pred eEEEEecchhHHHHHHHHHhhcCCeEEEecCCCChHHHHHHHHhhccCcccceeeeeccCcccccccccCCEEEEecCCC
Q 001840 854 KSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDLWW 933 (1007)
Q Consensus 854 KvIIFsq~~~~ld~L~~~L~~~gi~~~~i~Gs~s~~~R~~~I~~F~~~~~~~VlLlStkagg~GLNL~~A~~VI~~Dp~W 933 (1007)
|+||||+....++.|...|...|+....++|+++.++|.++++.|+++ .+.|| ++|+++++|||+..+++||+||+|+
T Consensus 379 k~LIF~~t~~~a~~l~~~L~~~g~~~~~ihg~~~~~eR~~il~~F~~G-~~~IL-VaTdv~~rGIDi~~v~~VI~~d~P~ 456 (545)
T PTZ00110 379 KILIFVETKKGADFLTKELRLDGWPALCIHGDKKQEERTWVLNEFKTG-KSPIM-IATDVASRGLDVKDVKYVINFDFPN 456 (545)
T ss_pred eEEEEecChHHHHHHHHHHHHcCCcEEEEECCCcHHHHHHHHHHHhcC-CCcEE-EEcchhhcCCCcccCCEEEEeCCCC
Confidence 999999999999999999999999999999999999999999999975 56665 5779999999999999999999999
Q ss_pred CCChhHHHhHhhhccCCcccEEEEEEEeCC
Q 001840 934 NPTTEDQAVDRAHRIGQTRPVTVTRLTIRD 963 (1007)
Q Consensus 934 Np~~e~QaigRi~RiGQ~k~V~VyrLi~~~ 963 (1007)
++..+.||+||+.|.|.+-. ++.|+..+
T Consensus 457 s~~~yvqRiGRtGR~G~~G~--ai~~~~~~ 484 (545)
T PTZ00110 457 QIEDYVHRIGRTGRAGAKGA--SYTFLTPD 484 (545)
T ss_pred CHHHHHHHhcccccCCCCce--EEEEECcc
Confidence 99999999999999998643 34556555
No 29
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=99.86 E-value=1.9e-19 Score=211.84 Aligned_cols=147 Identities=22% Similarity=0.252 Sum_probs=112.7
Q ss_pred cchhhHHHHHHHHHhhhhcccccchhhhhhcccCCCCCccccCCCCCCCCeEEEEecchhHHHHHHHHHhh-c--CCeEE
Q 001840 804 YISSKIRTVLDILHTQCELNTKCSIVEIHDLAGSNGSSAVHSKSPIEGPIKSIVFSQWTRMLDLVENSLNQ-H--CIQYR 880 (1007)
Q Consensus 804 ~~SsKl~~l~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvIIFsq~~~~ld~L~~~L~~-~--gi~~~ 880 (1007)
...+|+..+.++|.+...... ..++|||+.++..+..|..+|.+ + |++..
T Consensus 392 ~~npkle~l~~~l~e~f~~~~---------------------------dsR~IIFve~R~sa~~l~~~l~~~~~~~ir~~ 444 (746)
T KOG0354|consen 392 KENPKLEKLVEILVEQFEQNP---------------------------DSRTIIFVETRESALALKKWLLQLHELGIKAE 444 (746)
T ss_pred ccChhHHHHHHHHHHHhhcCC---------------------------CccEEEEEehHHHHHHHHHHHHhhhhcccccc
Confidence 468999999999998887543 44999999999999999999883 2 55554
Q ss_pred EecC--------CCChHHHHHHHHhhccCcccceeeeeccCcccccccccCCEEEEecCCCCCChhHHHhHhhhccCCcc
Q 001840 881 RLDG--------TMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTR 952 (1007)
Q Consensus 881 ~i~G--------s~s~~~R~~~I~~F~~~~~~~VlLlStkagg~GLNL~~A~~VI~~Dp~WNp~~e~QaigRi~RiGQ~k 952 (1007)
.+.| +|++.+..++++.|+++ +++||+ +|.+|-|||+...+|-||-||..-||.++.||.|| +| .+
T Consensus 445 ~fiGq~~s~~~~gmtqk~Q~evl~~Fr~G-~~NvLV-ATSV~EEGLDI~ec~lVIcYd~~snpIrmIQrrGR-gR---a~ 518 (746)
T KOG0354|consen 445 IFIGQGKSTQSTGMTQKEQKEVLDKFRDG-EINVLV-ATSVAEEGLDIGECNLVICYDYSSNPIRMVQRRGR-GR---AR 518 (746)
T ss_pred eeeeccccccccccCHHHHHHHHHHHhCC-CccEEE-EecchhccCCcccccEEEEecCCccHHHHHHHhcc-cc---cc
Confidence 4544 68889999999999974 777777 66999999999999999999999999999999999 55 55
Q ss_pred cEEEEEEEeCCCHHHHHHHHHHHHHHHHHHhh
Q 001840 953 PVTVTRLTIRDTVEDRILKLQDDKRKMVASAF 984 (1007)
Q Consensus 953 ~V~VyrLi~~~TIEe~I~~lq~~K~~li~~~~ 984 (1007)
.=+++-+.. +.=+-.....+..|+.+....+
T Consensus 519 ns~~vll~t-~~~~~~~E~~~~~~e~lm~~~i 549 (746)
T KOG0354|consen 519 NSKCVLLTT-GSEVIEFERNNLAKEKLMNQTI 549 (746)
T ss_pred CCeEEEEEc-chhHHHHHHHHHhHHHHHHHHH
Confidence 544444555 4333333334555666655554
No 30
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=99.86 E-value=7.8e-20 Score=216.72 Aligned_cols=106 Identities=21% Similarity=0.319 Sum_probs=95.8
Q ss_pred eEEEEecchhHHHHHHHHHhhcCCeEEEecCCCChHHHHHHHHhhccCcccceeeeeccCcccccccccCCEEEEecCCC
Q 001840 854 KSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDLWW 933 (1007)
Q Consensus 854 KvIIFsq~~~~ld~L~~~L~~~gi~~~~i~Gs~s~~~R~~~I~~F~~~~~~~VlLlStkagg~GLNL~~A~~VI~~Dp~W 933 (1007)
++||||+....++.+...|...|+.+..++|++++.+|+++++.|+++ .++||| +|+++++|||+..+++||+||+|.
T Consensus 244 ~~lVF~~t~~~~~~l~~~L~~~~~~v~~~hg~~~~~eR~~~l~~F~~g-~~~vLV-aTdv~~rGiDi~~v~~VI~~d~p~ 321 (460)
T PRK11776 244 SCVVFCNTKKECQEVADALNAQGFSALALHGDLEQRDRDQVLVRFANR-SCSVLV-ATDVAARGLDIKALEAVINYELAR 321 (460)
T ss_pred ceEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHcC-CCcEEE-EecccccccchhcCCeEEEecCCC
Confidence 899999999999999999999999999999999999999999999965 677766 569999999999999999999999
Q ss_pred CCChhHHHhHhhhccCCcccEEEEEEEeCC
Q 001840 934 NPTTEDQAVDRAHRIGQTRPVTVTRLTIRD 963 (1007)
Q Consensus 934 Np~~e~QaigRi~RiGQ~k~V~VyrLi~~~ 963 (1007)
++..+.||+||+.|.|+.- ..+.|+..+
T Consensus 322 ~~~~yiqR~GRtGR~g~~G--~ai~l~~~~ 349 (460)
T PRK11776 322 DPEVHVHRIGRTGRAGSKG--LALSLVAPE 349 (460)
T ss_pred CHhHhhhhcccccCCCCcc--eEEEEEchh
Confidence 9999999999999999763 345556554
No 31
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=99.85 E-value=1.1e-19 Score=213.92 Aligned_cols=101 Identities=23% Similarity=0.334 Sum_probs=93.1
Q ss_pred eEEEEecchhHHHHHHHHHhhcCCeEEEecCCCChHHHHHHHHhhccCcccceeeeeccCcccccccccCCEEEEecCCC
Q 001840 854 KSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDLWW 933 (1007)
Q Consensus 854 KvIIFsq~~~~ld~L~~~L~~~gi~~~~i~Gs~s~~~R~~~I~~F~~~~~~~VlLlStkagg~GLNL~~A~~VI~~Dp~W 933 (1007)
++|||+.....++.|...|...|+.+..++|.++..+|..+++.|+++ .+.||| +|+++++|+|+..+++||+||+|+
T Consensus 247 ~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~g~~~~~~R~~~l~~f~~G-~~~vLV-aTd~~~~GiDip~v~~VI~~d~p~ 324 (434)
T PRK11192 247 RSIVFVRTRERVHELAGWLRKAGINCCYLEGEMVQAKRNEAIKRLTDG-RVNVLV-ATDVAARGIDIDDVSHVINFDMPR 324 (434)
T ss_pred eEEEEeCChHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHhCC-CCcEEE-EccccccCccCCCCCEEEEECCCC
Confidence 999999999999999999999999999999999999999999999965 677766 559999999999999999999999
Q ss_pred CCChhHHHhHhhhccCCcccEEE
Q 001840 934 NPTTEDQAVDRAHRIGQTRPVTV 956 (1007)
Q Consensus 934 Np~~e~QaigRi~RiGQ~k~V~V 956 (1007)
++..+.|++||+.|.|..-.+.+
T Consensus 325 s~~~yiqr~GR~gR~g~~g~ai~ 347 (434)
T PRK11192 325 SADTYLHRIGRTGRAGRKGTAIS 347 (434)
T ss_pred CHHHHhhcccccccCCCCceEEE
Confidence 99999999999999998654443
No 32
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.85 E-value=8.7e-20 Score=216.29 Aligned_cols=102 Identities=24% Similarity=0.248 Sum_probs=94.0
Q ss_pred eEEEEecchhHHHHHHHHHhhcCCeEEEecCCCChHHHHHHHHhhccCcccceeeeeccCcccccccccCCEEEEecCCC
Q 001840 854 KSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDLWW 933 (1007)
Q Consensus 854 KvIIFsq~~~~ld~L~~~L~~~gi~~~~i~Gs~s~~~R~~~I~~F~~~~~~~VlLlStkagg~GLNL~~A~~VI~~Dp~W 933 (1007)
++||||.....++.+...|...|+.+..++|+++.++|.++++.|.++ .++||+ +|.+.|.|+|+...++||+|++|.
T Consensus 228 ~~IIF~~s~~~~e~la~~L~~~g~~~~~~H~~l~~~eR~~i~~~F~~g-~~~vLV-aT~~~~~GID~p~V~~VI~~~~P~ 305 (470)
T TIGR00614 228 SGIIYCPSRKKSEQVTASLQNLGIAAGAYHAGLEISARDDVHHKFQRD-EIQVVV-ATVAFGMGINKPDVRFVIHYSLPK 305 (470)
T ss_pred ceEEEECcHHHHHHHHHHHHhcCCCeeEeeCCCCHHHHHHHHHHHHcC-CCcEEE-EechhhccCCcccceEEEEeCCCC
Confidence 679999999999999999999999999999999999999999999965 777776 568999999999999999999999
Q ss_pred CCChhHHHhHhhhccCCcccEEEE
Q 001840 934 NPTTEDQAVDRAHRIGQTRPVTVT 957 (1007)
Q Consensus 934 Np~~e~QaigRi~RiGQ~k~V~Vy 957 (1007)
++..+.|++||++|.|+.....++
T Consensus 306 s~~~y~Qr~GRaGR~G~~~~~~~~ 329 (470)
T TIGR00614 306 SMESYYQESGRAGRDGLPSECHLF 329 (470)
T ss_pred CHHHHHhhhcCcCCCCCCceEEEE
Confidence 999999999999999988664443
No 33
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=99.85 E-value=2.3e-19 Score=214.76 Aligned_cols=106 Identities=20% Similarity=0.302 Sum_probs=94.1
Q ss_pred eEEEEecchhHHHHHHHHHhh-cCCeEEEecCCCChHHHHHHHHhhccCcccceeeeeccCcccccccccCCEEEEecCC
Q 001840 854 KSIVFSQWTRMLDLVENSLNQ-HCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDLW 932 (1007)
Q Consensus 854 KvIIFsq~~~~ld~L~~~L~~-~gi~~~~i~Gs~s~~~R~~~I~~F~~~~~~~VlLlStkagg~GLNL~~A~~VI~~Dp~ 932 (1007)
++|||+.....++.|...|.. .|+.+..++|+++.++|..+++.|.++ +++||+ +|++++.|||+..+++||+||+|
T Consensus 369 ~~iVFv~s~~~a~~l~~~L~~~~g~~~~~~Hg~~~~~eR~~il~~Fr~G-~~~ILV-aTdvl~rGiDip~v~~VI~~d~P 446 (518)
T PLN00206 369 PAVVFVSSRLGADLLANAITVVTGLKALSIHGEKSMKERREVMKSFLVG-EVPVIV-ATGVLGRGVDLLRVRQVIIFDMP 446 (518)
T ss_pred CEEEEcCCchhHHHHHHHHhhccCcceEEeeCCCCHHHHHHHHHHHHCC-CCCEEE-EecHhhccCCcccCCEEEEeCCC
Confidence 899999999999999999975 599999999999999999999999975 677765 66999999999999999999999
Q ss_pred CCCChhHHHhHhhhccCCcccEEEEEEEeCC
Q 001840 933 WNPTTEDQAVDRAHRIGQTRPVTVTRLTIRD 963 (1007)
Q Consensus 933 WNp~~e~QaigRi~RiGQ~k~V~VyrLi~~~ 963 (1007)
.++..+.|++||++|.|.. -.++.|+..+
T Consensus 447 ~s~~~yihRiGRaGR~g~~--G~ai~f~~~~ 475 (518)
T PLN00206 447 NTIKEYIHQIGRASRMGEK--GTAIVFVNEE 475 (518)
T ss_pred CCHHHHHHhccccccCCCC--eEEEEEEchh
Confidence 9999999999999999965 3344466544
No 34
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=99.85 E-value=2e-19 Score=212.53 Aligned_cols=106 Identities=25% Similarity=0.344 Sum_probs=95.2
Q ss_pred eEEEEecchhHHHHHHHHHhhcCCeEEEecCCCChHHHHHHHHhhccCcccceeeeeccCcccccccccCCEEEEecCCC
Q 001840 854 KSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDLWW 933 (1007)
Q Consensus 854 KvIIFsq~~~~ld~L~~~L~~~gi~~~~i~Gs~s~~~R~~~I~~F~~~~~~~VlLlStkagg~GLNL~~A~~VI~~Dp~W 933 (1007)
++|||+.....++.|.+.|...|+....++|.++.++|.++++.|+++ .++||| +|+++++|||+...++||+||+|.
T Consensus 247 ~~lVF~~t~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~g-~~~iLV-aTdv~~rGiDip~v~~VI~~~~P~ 324 (456)
T PRK10590 247 QVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSG-DIRVLV-ATDIAARGLDIEELPHVVNYELPN 324 (456)
T ss_pred cEEEEcCcHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHcC-CCcEEE-EccHHhcCCCcccCCEEEEeCCCC
Confidence 899999999999999999999999999999999999999999999975 677766 669999999999999999999999
Q ss_pred CCChhHHHhHhhhccCCcccEEEEEEEeCC
Q 001840 934 NPTTEDQAVDRAHRIGQTRPVTVTRLTIRD 963 (1007)
Q Consensus 934 Np~~e~QaigRi~RiGQ~k~V~VyrLi~~~ 963 (1007)
++..+.|++||+.|.|++-.+. .|+..+
T Consensus 325 ~~~~yvqR~GRaGR~g~~G~ai--~l~~~~ 352 (456)
T PRK10590 325 VPEDYVHRIGRTGRAAATGEAL--SLVCVD 352 (456)
T ss_pred CHHHhhhhccccccCCCCeeEE--EEecHH
Confidence 9999999999999999875433 344443
No 35
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.84 E-value=4.9e-19 Score=210.57 Aligned_cols=106 Identities=21% Similarity=0.324 Sum_probs=95.3
Q ss_pred eEEEEecchhHHHHHHHHHhhcCCeEEEecCCCChHHHHHHHHhhccCcccceeeeeccCcccccccccCCEEEEecCCC
Q 001840 854 KSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDLWW 933 (1007)
Q Consensus 854 KvIIFsq~~~~ld~L~~~L~~~gi~~~~i~Gs~s~~~R~~~I~~F~~~~~~~VlLlStkagg~GLNL~~A~~VI~~Dp~W 933 (1007)
|+|||++....++.|...|...|+.+..++|.++.++|.++++.|+++ +++||+ +|+++++|||+..+++||+||+|+
T Consensus 337 ~~IVF~~s~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~Fr~G-~~~vLv-aT~~l~~GIDi~~v~~VI~~~~P~ 414 (475)
T PRK01297 337 RVMVFANRKDEVRRIEERLVKDGINAAQLSGDVPQHKRIKTLEGFREG-KIRVLV-ATDVAGRGIHIDGISHVINFTLPE 414 (475)
T ss_pred eEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHhCC-CCcEEE-EccccccCCcccCCCEEEEeCCCC
Confidence 999999999999999999999999999999999999999999999965 667666 679999999999999999999999
Q ss_pred CCChhHHHhHhhhccCCcccEEEEEEEeCC
Q 001840 934 NPTTEDQAVDRAHRIGQTRPVTVTRLTIRD 963 (1007)
Q Consensus 934 Np~~e~QaigRi~RiGQ~k~V~VyrLi~~~ 963 (1007)
++..+.|++||++|.|+.-. ++.|+..+
T Consensus 415 s~~~y~Qr~GRaGR~g~~g~--~i~~~~~~ 442 (475)
T PRK01297 415 DPDDYVHRIGRTGRAGASGV--SISFAGED 442 (475)
T ss_pred CHHHHHHhhCccCCCCCCce--EEEEecHH
Confidence 99999999999999998643 33445443
No 36
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.84 E-value=3.6e-19 Score=208.78 Aligned_cols=105 Identities=18% Similarity=0.271 Sum_probs=95.3
Q ss_pred eEEEEecchhHHHHHHHHHhhcCCeEEEecCCCChHHHHHHHHhhccCcccceeeeeccCcccccccccCCEEEEecCCC
Q 001840 854 KSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDLWW 933 (1007)
Q Consensus 854 KvIIFsq~~~~ld~L~~~L~~~gi~~~~i~Gs~s~~~R~~~I~~F~~~~~~~VlLlStkagg~GLNL~~A~~VI~~Dp~W 933 (1007)
++|||++....++.|...|...|+.+..++|.++.++|.++++.|+++ ++.||+ +|+++++|||+..+++||+||+|+
T Consensus 257 ~~lVF~~t~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~~l~~F~~g-~~~vLV-aTdv~~rGiDip~v~~VI~~d~P~ 334 (423)
T PRK04837 257 RAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILEEFTRG-DLDILV-ATDVAARGLHIPAVTHVFNYDLPD 334 (423)
T ss_pred eEEEEECCHHHHHHHHHHHHhCCCcEEEecCCCChhHHHHHHHHHHcC-CCcEEE-EechhhcCCCccccCEEEEeCCCC
Confidence 999999999999999999999999999999999999999999999975 677766 559999999999999999999999
Q ss_pred CCChhHHHhHhhhccCCcccEEEEEEEeC
Q 001840 934 NPTTEDQAVDRAHRIGQTRPVTVTRLTIR 962 (1007)
Q Consensus 934 Np~~e~QaigRi~RiGQ~k~V~VyrLi~~ 962 (1007)
++..+.|++||+.|.|+.-. ++.|+.+
T Consensus 335 s~~~yiqR~GR~gR~G~~G~--ai~~~~~ 361 (423)
T PRK04837 335 DCEDYVHRIGRTGRAGASGH--SISLACE 361 (423)
T ss_pred chhheEeccccccCCCCCee--EEEEeCH
Confidence 99999999999999997643 3445554
No 37
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=99.83 E-value=9.6e-19 Score=212.10 Aligned_cols=98 Identities=16% Similarity=0.292 Sum_probs=91.3
Q ss_pred eEEEEecchhHHHHHHHHHhhcCCeEEEecCCCChHHHHHHHHhhccCcccceeeeeccCcccccccccCCEEEEecCCC
Q 001840 854 KSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDLWW 933 (1007)
Q Consensus 854 KvIIFsq~~~~ld~L~~~L~~~gi~~~~i~Gs~s~~~R~~~I~~F~~~~~~~VlLlStkagg~GLNL~~A~~VI~~Dp~W 933 (1007)
++||||.....++.|...|...|+....++|.+++.+|.++++.|+++ .+.||| +|++++.|||+...++||+||+|.
T Consensus 247 ~~IVF~~tk~~a~~l~~~L~~~g~~~~~lhgd~~q~~R~~il~~Fr~G-~~~ILV-ATdv~arGIDip~V~~VI~~d~P~ 324 (629)
T PRK11634 247 AAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDG-RLDILI-ATDVAARGLDVERISLVVNYDIPM 324 (629)
T ss_pred CEEEEeccHHHHHHHHHHHHhCCCCEEEeeCCCCHHHHHHHHHHHhCC-CCCEEE-EcchHhcCCCcccCCEEEEeCCCC
Confidence 899999999999999999999999999999999999999999999965 666655 779999999999999999999999
Q ss_pred CCChhHHHhHhhhccCCccc
Q 001840 934 NPTTEDQAVDRAHRIGQTRP 953 (1007)
Q Consensus 934 Np~~e~QaigRi~RiGQ~k~ 953 (1007)
++..+.|++||+.|.|..-.
T Consensus 325 ~~e~yvqRiGRtGRaGr~G~ 344 (629)
T PRK11634 325 DSESYVHRIGRTGRAGRAGR 344 (629)
T ss_pred CHHHHHHHhccccCCCCcce
Confidence 99999999999999997643
No 38
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.83 E-value=7.3e-19 Score=211.86 Aligned_cols=105 Identities=16% Similarity=0.330 Sum_probs=94.7
Q ss_pred eEEEEecchhHHHHHHHHHhhcCCeEEEecCCCChHHHHHHHHhhccCcccceeeeeccCcccccccccCCEEEEecCCC
Q 001840 854 KSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDLWW 933 (1007)
Q Consensus 854 KvIIFsq~~~~ld~L~~~L~~~gi~~~~i~Gs~s~~~R~~~I~~F~~~~~~~VlLlStkagg~GLNL~~A~~VI~~Dp~W 933 (1007)
++|||+.....++.|.+.|...++.+..++|.++..+|.++++.|+++ ++.||| +|+++++|||+...++||+||+||
T Consensus 259 k~LVF~nt~~~ae~l~~~L~~~g~~v~~lhg~l~~~eR~~il~~Fr~G-~~~VLV-aTdv~arGIDip~V~~VInyd~P~ 336 (572)
T PRK04537 259 RTMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRESLLNRFQKG-QLEILV-ATDVAARGLHIDGVKYVYNYDLPF 336 (572)
T ss_pred cEEEEeCCHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHHcC-CCeEEE-EehhhhcCCCccCCCEEEEcCCCC
Confidence 899999999999999999999999999999999999999999999965 666666 669999999999999999999999
Q ss_pred CCChhHHHhHhhhccCCcccEEEEEEEeC
Q 001840 934 NPTTEDQAVDRAHRIGQTRPVTVTRLTIR 962 (1007)
Q Consensus 934 Np~~e~QaigRi~RiGQ~k~V~VyrLi~~ 962 (1007)
++..+.|++||+.|.|..-.+ +.|+..
T Consensus 337 s~~~yvqRiGRaGR~G~~G~a--i~~~~~ 363 (572)
T PRK04537 337 DAEDYVHRIGRTARLGEEGDA--ISFACE 363 (572)
T ss_pred CHHHHhhhhcccccCCCCceE--EEEecH
Confidence 999999999999999986443 334543
No 39
>PTZ00424 helicase 45; Provisional
Probab=99.82 E-value=1.7e-18 Score=201.92 Aligned_cols=106 Identities=19% Similarity=0.325 Sum_probs=95.4
Q ss_pred eEEEEecchhHHHHHHHHHhhcCCeEEEecCCCChHHHHHHHHhhccCcccceeeeeccCcccccccccCCEEEEecCCC
Q 001840 854 KSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDLWW 933 (1007)
Q Consensus 854 KvIIFsq~~~~ld~L~~~L~~~gi~~~~i~Gs~s~~~R~~~I~~F~~~~~~~VlLlStkagg~GLNL~~A~~VI~~Dp~W 933 (1007)
++||||.....++.+...|...++.+..++|+++.++|..+++.|+++ .++||+ +|+++++|+|+..+++||+||++.
T Consensus 269 ~~ivF~~t~~~~~~l~~~l~~~~~~~~~~h~~~~~~~R~~i~~~f~~g-~~~vLv-aT~~l~~GiDip~v~~VI~~~~p~ 346 (401)
T PTZ00424 269 QAIIYCNTRRKVDYLTKKMHERDFTVSCMHGDMDQKDRDLIMREFRSG-STRVLI-TTDLLARGIDVQQVSLVINYDLPA 346 (401)
T ss_pred eEEEEecCcHHHHHHHHHHHHCCCcEEEEeCCCCHHHHHHHHHHHHcC-CCCEEE-EcccccCCcCcccCCEEEEECCCC
Confidence 899999999999999999999999999999999999999999999965 677665 669999999999999999999999
Q ss_pred CCChhHHHhHhhhccCCcccEEEEEEEeCC
Q 001840 934 NPTTEDQAVDRAHRIGQTRPVTVTRLTIRD 963 (1007)
Q Consensus 934 Np~~e~QaigRi~RiGQ~k~V~VyrLi~~~ 963 (1007)
++..+.|++||++|.|.. -.++.|+..+
T Consensus 347 s~~~y~qr~GRagR~g~~--G~~i~l~~~~ 374 (401)
T PTZ00424 347 SPENYIHRIGRSGRFGRK--GVAINFVTPD 374 (401)
T ss_pred CHHHEeecccccccCCCC--ceEEEEEcHH
Confidence 999999999999999864 3455566554
No 40
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=99.82 E-value=1e-18 Score=212.70 Aligned_cols=98 Identities=17% Similarity=0.225 Sum_probs=91.6
Q ss_pred eEEEEecchhHHHHHHHHHhhcCCeEEEecCCCChHHHHHHHHhhccCcccceeeeeccCcccccccccCCEEEEecCCC
Q 001840 854 KSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDLWW 933 (1007)
Q Consensus 854 KvIIFsq~~~~ld~L~~~L~~~gi~~~~i~Gs~s~~~R~~~I~~F~~~~~~~VlLlStkagg~GLNL~~A~~VI~~Dp~W 933 (1007)
++||||.....++.+...|...|+.+..++|+++.++|.++++.|..+ .+.||+ +|.+.|.|||+...++||+||+|.
T Consensus 238 ~~IIFc~tr~~~e~la~~L~~~g~~v~~~Ha~l~~~~R~~i~~~F~~g-~~~VLV-aT~a~~~GIDip~V~~VI~~d~P~ 315 (607)
T PRK11057 238 SGIIYCNSRAKVEDTAARLQSRGISAAAYHAGLDNDVRADVQEAFQRD-DLQIVV-ATVAFGMGINKPNVRFVVHFDIPR 315 (607)
T ss_pred CEEEEECcHHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHHCC-CCCEEE-EechhhccCCCCCcCEEEEeCCCC
Confidence 889999999999999999999999999999999999999999999965 667666 668999999999999999999999
Q ss_pred CCChhHHHhHhhhccCCccc
Q 001840 934 NPTTEDQAVDRAHRIGQTRP 953 (1007)
Q Consensus 934 Np~~e~QaigRi~RiGQ~k~ 953 (1007)
+...+.|++||++|.|....
T Consensus 316 s~~~y~Qr~GRaGR~G~~~~ 335 (607)
T PRK11057 316 NIESYYQETGRAGRDGLPAE 335 (607)
T ss_pred CHHHHHHHhhhccCCCCCce
Confidence 99999999999999997654
No 41
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=99.82 E-value=1.5e-18 Score=212.24 Aligned_cols=79 Identities=14% Similarity=0.196 Sum_probs=68.0
Q ss_pred cCCeEEEecCCCChHHHHHHHHhhccCcccceeeeeccCcccccccccCCEEEEecCCC-CCChhHHHhHhhhccCCccc
Q 001840 875 HCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDLWW-NPTTEDQAVDRAHRIGQTRP 953 (1007)
Q Consensus 875 ~gi~~~~i~Gs~s~~~R~~~I~~F~~~~~~~VlLlStkagg~GLNL~~A~~VI~~Dp~W-Np~~e~QaigRi~RiGQ~k~ 953 (1007)
.++.+..++|.|+.++|.+++++|.++ +..||+ +|.+.++|+|+..++.||+++++. +.+.+.|++||++|-|..-.
T Consensus 481 ~~~~v~~lHG~m~~~eR~~i~~~F~~g-~~~ILV-aT~vie~GvDiP~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~ 558 (630)
T TIGR00643 481 PKYNVGLLHGRMKSDEKEAVMEEFREG-EVDILV-ATTVIEVGVDVPNATVMVIEDAERFGLSQLHQLRGRVGRGDHQSY 558 (630)
T ss_pred CCCcEEEEeCCCCHHHHHHHHHHHHcC-CCCEEE-ECceeecCcccCCCcEEEEeCCCcCCHHHHHHHhhhcccCCCCcE
Confidence 367889999999999999999999975 566666 668999999999999999999884 67889999999999987644
Q ss_pred EE
Q 001840 954 VT 955 (1007)
Q Consensus 954 V~ 955 (1007)
+.
T Consensus 559 ~i 560 (630)
T TIGR00643 559 CL 560 (630)
T ss_pred EE
Confidence 33
No 42
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=99.82 E-value=1.1e-18 Score=212.86 Aligned_cols=100 Identities=21% Similarity=0.252 Sum_probs=92.3
Q ss_pred eEEEEecchhHHHHHHHHHhhcCCeEEEecCCCChHHHHHHHHhhccCcccceeeeeccCcccccccccCCEEEEecCCC
Q 001840 854 KSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDLWW 933 (1007)
Q Consensus 854 KvIIFsq~~~~ld~L~~~L~~~gi~~~~i~Gs~s~~~R~~~I~~F~~~~~~~VlLlStkagg~GLNL~~A~~VI~~Dp~W 933 (1007)
+.||||......+.+.+.|...|+.+..++|+++.++|..+++.|..+ .+.||+ +|.+.|.|+|+..+++||+||+|.
T Consensus 226 ~~IIf~~sr~~~e~la~~L~~~g~~~~~~H~~l~~~~R~~i~~~F~~g-~~~vlV-aT~a~~~GID~p~v~~VI~~~~p~ 303 (591)
T TIGR01389 226 SGIIYASSRKKVEELAERLESQGISALAYHAGLSNKVRAENQEDFLYD-DVKVMV-ATNAFGMGIDKPNVRFVIHYDMPG 303 (591)
T ss_pred CEEEEECcHHHHHHHHHHHHhCCCCEEEEECCCCHHHHHHHHHHHHcC-CCcEEE-EechhhccCcCCCCCEEEEcCCCC
Confidence 889999999999999999999999999999999999999999999976 566665 669999999999999999999999
Q ss_pred CCChhHHHhHhhhccCCcccEE
Q 001840 934 NPTTEDQAVDRAHRIGQTRPVT 955 (1007)
Q Consensus 934 Np~~e~QaigRi~RiGQ~k~V~ 955 (1007)
+...+.|++||++|.|+...+.
T Consensus 304 s~~~y~Q~~GRaGR~G~~~~~i 325 (591)
T TIGR01389 304 NLESYYQEAGRAGRDGLPAEAI 325 (591)
T ss_pred CHHHHhhhhccccCCCCCceEE
Confidence 9999999999999999765543
No 43
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.80 E-value=5.8e-18 Score=214.69 Aligned_cols=105 Identities=13% Similarity=0.281 Sum_probs=85.5
Q ss_pred CeEEEEecchhHHHHHHHHHhhc------CC---eEEEecCCCChHHHHHHHHhhccCcccceeeeeccCcccccccccC
Q 001840 853 IKSIVFSQWTRMLDLVENSLNQH------CI---QYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAA 923 (1007)
Q Consensus 853 ~KvIIFsq~~~~ld~L~~~L~~~------gi---~~~~i~Gs~s~~~R~~~I~~F~~~~~~~VlLlStkagg~GLNL~~A 923 (1007)
.|.||||.....++.+.+.|.+. ++ .+..++|+++ ++.+++++|.++ ....++++.+..++|++....
T Consensus 699 ~KtiIF~~s~~HA~~i~~~L~~~f~~~~~~~~~~~v~~itg~~~--~~~~li~~Fk~~-~~p~IlVsvdmL~TG~DvP~v 775 (1123)
T PRK11448 699 GKTLIFAATDAHADMVVRLLKEAFKKKYGQVEDDAVIKITGSID--KPDQLIRRFKNE-RLPNIVVTVDLLTTGIDVPSI 775 (1123)
T ss_pred CcEEEEEcCHHHHHHHHHHHHHHHHhhcCCcCccceEEEeCCcc--chHHHHHHHhCC-CCCeEEEEecccccCCCcccc
Confidence 39999999999999888877653 22 3457899885 578899999875 344667788999999999999
Q ss_pred CEEEEecCCCCCChhHHHhHhhhccCC---cccEEEEEEE
Q 001840 924 SHVILLDLWWNPTTEDQAVDRAHRIGQ---TRPVTVTRLT 960 (1007)
Q Consensus 924 ~~VI~~Dp~WNp~~e~QaigRi~RiGQ---~k~V~VyrLi 960 (1007)
+.||++.|.-++..+.|++||+-|.-- +....|+-++
T Consensus 776 ~~vVf~rpvkS~~lf~QmIGRgtR~~~~~~K~~f~I~D~v 815 (1123)
T PRK11448 776 CNLVFLRRVRSRILYEQMLGRATRLCPEIGKTHFRIFDAV 815 (1123)
T ss_pred cEEEEecCCCCHHHHHHHHhhhccCCccCCCceEEEEehH
Confidence 999999999999999999999999854 4446666554
No 44
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=99.78 E-value=1.2e-17 Score=208.38 Aligned_cols=105 Identities=12% Similarity=0.121 Sum_probs=90.0
Q ss_pred eEEEEecchhHHHHHHHHHhhc--CCeEEEecCCCChHHHHHHHHhhccCcccceeeeeccCcccccccccCCEEEEecC
Q 001840 854 KSIVFSQWTRMLDLVENSLNQH--CIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDL 931 (1007)
Q Consensus 854 KvIIFsq~~~~ld~L~~~L~~~--gi~~~~i~Gs~s~~~R~~~I~~F~~~~~~~VlLlStkagg~GLNL~~A~~VI~~Dp 931 (1007)
+++||++....++.+.+.|++. ++++..++|.|+.++|.+++++|.++ ++.||| +|.+.+.|+|+..+++||++++
T Consensus 662 qv~if~n~i~~~e~l~~~L~~~~p~~~v~~lHG~m~~~eRe~im~~F~~G-k~~ILV-aT~iie~GIDIp~v~~VIi~~a 739 (926)
T TIGR00580 662 QVFYVHNRIESIEKLATQLRELVPEARIAIAHGQMTENELEEVMLEFYKG-EFQVLV-CTTIIETGIDIPNANTIIIERA 739 (926)
T ss_pred eEEEEECCcHHHHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHHHHHcC-CCCEEE-ECChhhcccccccCCEEEEecC
Confidence 8999999999999999999885 78999999999999999999999975 666666 6699999999999999999998
Q ss_pred C-CCCChhHHHhHhhhccCCcccEEEEEEEeC
Q 001840 932 W-WNPTTEDQAVDRAHRIGQTRPVTVTRLTIR 962 (1007)
Q Consensus 932 ~-WNp~~e~QaigRi~RiGQ~k~V~VyrLi~~ 962 (1007)
+ +..+.+.|++||++|-|+. =++|.|+..
T Consensus 740 ~~~gls~l~Qr~GRvGR~g~~--g~aill~~~ 769 (926)
T TIGR00580 740 DKFGLAQLYQLRGRVGRSKKK--AYAYLLYPH 769 (926)
T ss_pred CCCCHHHHHHHhcCCCCCCCC--eEEEEEECC
Confidence 5 4566888999999998865 344445543
No 45
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=99.78 E-value=3.4e-17 Score=201.55 Aligned_cols=86 Identities=15% Similarity=0.194 Sum_probs=70.8
Q ss_pred HHHHHHhhc--CCeEEEecCCCChHHHHHHHHhhccCcccceeeeeccCcccccccccCCEEEEecCCC-CCChhHHHhH
Q 001840 867 LVENSLNQH--CIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDLWW-NPTTEDQAVD 943 (1007)
Q Consensus 867 ~L~~~L~~~--gi~~~~i~Gs~s~~~R~~~I~~F~~~~~~~VlLlStkagg~GLNL~~A~~VI~~Dp~W-Np~~e~Qaig 943 (1007)
.+.+.|.+. ++++..++|+|+.++|++++++|.++ ++.||+ +|.+.++|+|+..++.||+++++. ..+.+.|++|
T Consensus 494 ~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g-~~~ILV-aT~vie~GiDip~v~~VIi~~~~r~gls~lhQ~~G 571 (681)
T PRK10917 494 ETYEELQEAFPELRVGLLHGRMKPAEKDAVMAAFKAG-EIDILV-ATTVIEVGVDVPNATVMVIENAERFGLAQLHQLRG 571 (681)
T ss_pred HHHHHHHHHCCCCcEEEEeCCCCHHHHHHHHHHHHcC-CCCEEE-ECcceeeCcccCCCcEEEEeCCCCCCHHHHHHHhh
Confidence 344444443 47899999999999999999999975 666665 669999999999999999999984 5688999999
Q ss_pred hhhccCCcccE
Q 001840 944 RAHRIGQTRPV 954 (1007)
Q Consensus 944 Ri~RiGQ~k~V 954 (1007)
|++|-|..-.+
T Consensus 572 RvGR~g~~g~~ 582 (681)
T PRK10917 572 RVGRGAAQSYC 582 (681)
T ss_pred cccCCCCceEE
Confidence 99999875333
No 46
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.77 E-value=2.6e-17 Score=188.77 Aligned_cols=117 Identities=21% Similarity=0.268 Sum_probs=103.1
Q ss_pred hhhHHHHHHHHHhhhhcccccchhhhhhcccCCCCCccccCCCCCCCCeEEEEecchhHHHHHHHHHhhcCCeEEEecCC
Q 001840 806 SSKIRTVLDILHTQCELNTKCSIVEIHDLAGSNGSSAVHSKSPIEGPIKSIVFSQWTRMLDLVENSLNQHCIQYRRLDGT 885 (1007)
Q Consensus 806 SsKl~~l~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvIIFsq~~~~ld~L~~~L~~~gi~~~~i~Gs 885 (1007)
..|...|.++|...... . ..|+||||+...+.+.|...|...+++...|+|.
T Consensus 323 ~~K~~~l~~lL~~~~~~-~---------------------------~~KvIIFc~tkr~~~~l~~~l~~~~~~a~~iHGd 374 (519)
T KOG0331|consen 323 TAKLRKLGKLLEDISSD-S---------------------------EGKVIIFCETKRTCDELARNLRRKGWPAVAIHGD 374 (519)
T ss_pred HHHHHHHHHHHHHHhcc-C---------------------------CCcEEEEecchhhHHHHHHHHHhcCcceeeeccc
Confidence 56777777888776621 1 2399999999999999999999999999999999
Q ss_pred CChHHHHHHHHhhccCcccceeeeeccCcccccccccCCEEEEecCCCCCChhHHHhHhhhccCCcc
Q 001840 886 MSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTR 952 (1007)
Q Consensus 886 ~s~~~R~~~I~~F~~~~~~~VlLlStkagg~GLNL~~A~~VI~~Dp~WNp~~e~QaigRi~RiGQ~k 952 (1007)
.++.+|+.+++.|.++ +..||+ .|++++.||++...++||+||+|-|...+.+|+||..|-|++=
T Consensus 375 ~sQ~eR~~~L~~FreG-~~~vLV-ATdVAaRGLDi~dV~lVInydfP~~vEdYVHRiGRTGRa~~~G 439 (519)
T KOG0331|consen 375 KSQSERDWVLKGFREG-KSPVLV-ATDVAARGLDVPDVDLVINYDFPNNVEDYVHRIGRTGRAGKKG 439 (519)
T ss_pred ccHHHHHHHHHhcccC-CcceEE-EcccccccCCCccccEEEeCCCCCCHHHHHhhcCccccCCCCc
Confidence 9999999999999976 555655 6699999999999999999999999999999999999988763
No 47
>PRK10689 transcription-repair coupling factor; Provisional
Probab=99.77 E-value=5.2e-17 Score=206.85 Aligned_cols=99 Identities=13% Similarity=0.130 Sum_probs=87.4
Q ss_pred eEEEEecchhHHHHHHHHHhhc--CCeEEEecCCCChHHHHHHHHhhccCcccceeeeeccCcccccccccCCEEEEecC
Q 001840 854 KSIVFSQWTRMLDLVENSLNQH--CIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDL 931 (1007)
Q Consensus 854 KvIIFsq~~~~ld~L~~~L~~~--gi~~~~i~Gs~s~~~R~~~I~~F~~~~~~~VlLlStkagg~GLNL~~A~~VI~~Dp 931 (1007)
+++||++....++.+.+.|.+. ++++..++|.|+.++|++++.+|.++ ++.||| +|.+.+.|||+..+++||+.++
T Consensus 811 qv~vf~n~i~~ie~la~~L~~~~p~~~v~~lHG~m~q~eRe~im~~Fr~G-k~~VLV-aTdIierGIDIP~v~~VIi~~a 888 (1147)
T PRK10689 811 QVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQ-RFNVLV-CTTIIETGIDIPTANTIIIERA 888 (1147)
T ss_pred eEEEEECCHHHHHHHHHHHHHhCCCCcEEEEeCCCCHHHHHHHHHHHHhc-CCCEEE-ECchhhcccccccCCEEEEecC
Confidence 8999999999999999999887 78899999999999999999999976 677766 6699999999999999998776
Q ss_pred C-CCCChhHHHhHhhhccCCcccE
Q 001840 932 W-WNPTTEDQAVDRAHRIGQTRPV 954 (1007)
Q Consensus 932 ~-WNp~~e~QaigRi~RiGQ~k~V 954 (1007)
. |..+.+.|++||++|.|++--+
T Consensus 889 d~fglaq~~Qr~GRvGR~g~~g~a 912 (1147)
T PRK10689 889 DHFGLAQLHQLRGRVGRSHHQAYA 912 (1147)
T ss_pred CCCCHHHHHHHhhccCCCCCceEE
Confidence 4 6778899999999999877433
No 48
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=99.76 E-value=4.1e-17 Score=200.52 Aligned_cols=102 Identities=22% Similarity=0.193 Sum_probs=93.9
Q ss_pred eEEEEecchhHHHHHHHHHhhcCCeEEEecCCCChHHHHHHHHhhccCcccceeeeeccCcccccccccCCEEEEecCCC
Q 001840 854 KSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDLWW 933 (1007)
Q Consensus 854 KvIIFsq~~~~ld~L~~~L~~~gi~~~~i~Gs~s~~~R~~~I~~F~~~~~~~VlLlStkagg~GLNL~~A~~VI~~Dp~W 933 (1007)
..||||......+.|...|...|+.+..++|+|+.++|..+++.|..+ ++.||+ +|.+.|.|||+...++||+||+|-
T Consensus 682 sgIIYC~SRke~E~LAe~L~~~Gika~~YHAGLs~eeR~~vqe~F~~G-ei~VLV-ATdAFGMGIDkPDVR~VIHydlPk 759 (1195)
T PLN03137 682 CGIIYCLSRMDCEKVAERLQEFGHKAAFYHGSMDPAQRAFVQKQWSKD-EINIIC-ATVAFGMGINKPDVRFVIHHSLPK 759 (1195)
T ss_pred CceeEeCchhHHHHHHHHHHHCCCCeeeeeCCCCHHHHHHHHHHHhcC-CCcEEE-EechhhcCCCccCCcEEEEcCCCC
Confidence 679999999999999999999999999999999999999999999976 677766 569999999999999999999999
Q ss_pred CCChhHHHhHhhhccCCcccEEEE
Q 001840 934 NPTTEDQAVDRAHRIGQTRPVTVT 957 (1007)
Q Consensus 934 Np~~e~QaigRi~RiGQ~k~V~Vy 957 (1007)
+...+.|++||++|.|+.-.+..|
T Consensus 760 SiEsYyQriGRAGRDG~~g~cILl 783 (1195)
T PLN03137 760 SIEGYHQECGRAGRDGQRSSCVLY 783 (1195)
T ss_pred CHHHHHhhhcccCCCCCCceEEEE
Confidence 999999999999999988654443
No 49
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=99.72 E-value=1.2e-15 Score=188.69 Aligned_cols=113 Identities=16% Similarity=0.167 Sum_probs=95.2
Q ss_pred eEEEEecchhHHHHHHHHHhhc--------CCeEEEecCCCChHHHHHHHHhhccCcccceeeeeccCcccccccccCCE
Q 001840 854 KSIVFSQWTRMLDLVENSLNQH--------CIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASH 925 (1007)
Q Consensus 854 KvIIFsq~~~~ld~L~~~L~~~--------gi~~~~i~Gs~s~~~R~~~I~~F~~~~~~~VlLlStkagg~GLNL~~A~~ 925 (1007)
++|||++.....+.|...|... +..+..++|++++++|.++.++|.++ ++++|+ +|++++.|||+...++
T Consensus 273 ~~IVF~~sr~~ae~l~~~l~~~l~~~~~~l~~~v~~~hgg~~~~eR~~ie~~f~~G-~i~vLV-aTd~lerGIDI~~vd~ 350 (742)
T TIGR03817 273 RTLTFVRSRRGAELVAAIARRLLGEVDPDLAERVAAYRAGYLPEDRRELERALRDG-ELLGVA-TTNALELGVDISGLDA 350 (742)
T ss_pred CEEEEcCCHHHHHHHHHHHHHHHHhhccccccchhheecCCCHHHHHHHHHHHHcC-CceEEE-ECchHhccCCcccccE
Confidence 9999999999999999888764 56778899999999999999999975 666655 7799999999999999
Q ss_pred EEEecCCCCCChhHHHhHhhhccCCcccEEEEEEEeCCCHHHHHH
Q 001840 926 VILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVEDRIL 970 (1007)
Q Consensus 926 VI~~Dp~WNp~~e~QaigRi~RiGQ~k~V~VyrLi~~~TIEe~I~ 970 (1007)
||+||.|-+...+.|++||++|.|+.-- ++.++..+..|..++
T Consensus 351 VI~~~~P~s~~~y~qRiGRaGR~G~~g~--ai~v~~~~~~d~~~~ 393 (742)
T TIGR03817 351 VVIAGFPGTRASLWQQAGRAGRRGQGAL--VVLVARDDPLDTYLV 393 (742)
T ss_pred EEEeCCCCCHHHHHHhccccCCCCCCcE--EEEEeCCChHHHHHH
Confidence 9999999999999999999999997643 333444455665543
No 50
>PRK02362 ski2-like helicase; Provisional
Probab=99.70 E-value=1.6e-15 Score=189.41 Aligned_cols=82 Identities=22% Similarity=0.087 Sum_probs=66.8
Q ss_pred eEEEecCCCChHHHHHHHHhhccCcccceeeeeccCcccccccccCCEEEE----ec-----CCCCCChhHHHhHhhhcc
Q 001840 878 QYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVIL----LD-----LWWNPTTEDQAVDRAHRI 948 (1007)
Q Consensus 878 ~~~~i~Gs~s~~~R~~~I~~F~~~~~~~VlLlStkagg~GLNL~~A~~VI~----~D-----p~WNp~~e~QaigRi~Ri 948 (1007)
.+..++|+++.++|..+.+.|+++ .++||+ +|.+++.|+||.+...||. || .+.++..+.|++||++|.
T Consensus 305 gva~hHagl~~~eR~~ve~~Fr~G-~i~VLv-aT~tla~GvnlPa~~VVI~~~~~yd~~~g~~~~s~~~y~Qm~GRAGR~ 382 (737)
T PRK02362 305 GAAFHHAGLSREHRELVEDAFRDR-LIKVIS-STPTLAAGLNLPARRVIIRDYRRYDGGAGMQPIPVLEYHQMAGRAGRP 382 (737)
T ss_pred CEEeecCCCCHHHHHHHHHHHHcC-CCeEEE-echhhhhhcCCCceEEEEecceeecCCCCceeCCHHHHHHHhhcCCCC
Confidence 467789999999999999999975 677776 5699999999998887776 77 467788999999999999
Q ss_pred CCcccEEEEEEEe
Q 001840 949 GQTRPVTVTRLTI 961 (1007)
Q Consensus 949 GQ~k~V~VyrLi~ 961 (1007)
|....=.++-++.
T Consensus 383 g~d~~G~~ii~~~ 395 (737)
T PRK02362 383 GLDPYGEAVLLAK 395 (737)
T ss_pred CCCCCceEEEEec
Confidence 9875544444443
No 51
>PRK13767 ATP-dependent helicase; Provisional
Probab=99.69 E-value=3.7e-15 Score=187.96 Aligned_cols=102 Identities=17% Similarity=0.159 Sum_probs=88.4
Q ss_pred eEEEEecchhHHHHHHHHHhhc------CCeEEEecCCCChHHHHHHHHhhccCcccceeeeeccCcccccccccCCEEE
Q 001840 854 KSIVFSQWTRMLDLVENSLNQH------CIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVI 927 (1007)
Q Consensus 854 KvIIFsq~~~~ld~L~~~L~~~------gi~~~~i~Gs~s~~~R~~~I~~F~~~~~~~VlLlStkagg~GLNL~~A~~VI 927 (1007)
++||||+....++.+...|.+. +..+..++|+++.++|..+.+.|+++ .++|++ +|.+++.|||+...++||
T Consensus 286 ~~LVF~nTr~~ae~la~~L~~~~~~~~~~~~i~~hHg~ls~~~R~~ve~~fk~G-~i~vLV-aTs~Le~GIDip~Vd~VI 363 (876)
T PRK13767 286 TTLIFTNTRSGAERVLYNLRKRFPEEYDEDNIGAHHSSLSREVRLEVEEKLKRG-ELKVVV-SSTSLELGIDIGYIDLVV 363 (876)
T ss_pred CEEEEeCCHHHHHHHHHHHHHhchhhccccceeeeeCCCCHHHHHHHHHHHHcC-CCeEEE-ECChHHhcCCCCCCcEEE
Confidence 8999999999999999998773 46788899999999999999999976 666666 669999999999999999
Q ss_pred EecCCCCCChhHHHhHhhhcc-CCcccEEEE
Q 001840 928 LLDLWWNPTTEDQAVDRAHRI-GQTRPVTVT 957 (1007)
Q Consensus 928 ~~Dp~WNp~~e~QaigRi~Ri-GQ~k~V~Vy 957 (1007)
++++|.+...+.|++||++|- |+...-.++
T Consensus 364 ~~~~P~sv~~ylQRiGRaGR~~g~~~~g~ii 394 (876)
T PRK13767 364 LLGSPKSVSRLLQRIGRAGHRLGEVSKGRII 394 (876)
T ss_pred EeCCCCCHHHHHHhcccCCCCCCCCCcEEEE
Confidence 999999999999999999986 444444444
No 52
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=99.68 E-value=9.7e-15 Score=174.06 Aligned_cols=105 Identities=26% Similarity=0.433 Sum_probs=94.7
Q ss_pred eEEEEecchhHHHHHHHHHhhcCCeEEEecCCCChHHHHHHHHhhccCcccceeeeeccCcccccccccCCEEEEecCCC
Q 001840 854 KSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDLWW 933 (1007)
Q Consensus 854 KvIIFsq~~~~ld~L~~~L~~~gi~~~~i~Gs~s~~~R~~~I~~F~~~~~~~VlLlStkagg~GLNL~~A~~VI~~Dp~W 933 (1007)
++|||+.-...++.|...|...|+.+..|+|++++.+|.++++.|+++ ...|||.+ ++++.||++...++||+||+|.
T Consensus 275 ~~IVF~~tk~~~~~l~~~l~~~g~~~~~lhG~l~q~~R~~~l~~F~~g-~~~vLVaT-DvaaRGiDi~~v~~VinyD~p~ 352 (513)
T COG0513 275 RVIVFVRTKRLVEELAESLRKRGFKVAALHGDLPQEERDRALEKFKDG-ELRVLVAT-DVAARGLDIPDVSHVINYDLPL 352 (513)
T ss_pred eEEEEeCcHHHHHHHHHHHHHCCCeEEEecCCCCHHHHHHHHHHHHcC-CCCEEEEe-chhhccCCccccceeEEccCCC
Confidence 799999999999999999999999999999999999999999999954 77888755 9999999999999999999999
Q ss_pred CCChhHHHhHhhhccCCcccEEEEEEEeC
Q 001840 934 NPTTEDQAVDRAHRIGQTRPVTVTRLTIR 962 (1007)
Q Consensus 934 Np~~e~QaigRi~RiGQ~k~V~VyrLi~~ 962 (1007)
++..+.+|+||..|.|.+ =..+.|+..
T Consensus 353 ~~e~yvHRiGRTgRaG~~--G~ai~fv~~ 379 (513)
T COG0513 353 DPEDYVHRIGRTGRAGRK--GVAISFVTE 379 (513)
T ss_pred CHHHheeccCccccCCCC--CeEEEEeCc
Confidence 999999999999999944 233445554
No 53
>PRK01172 ski2-like helicase; Provisional
Probab=99.65 E-value=1.2e-14 Score=180.19 Aligned_cols=72 Identities=22% Similarity=0.181 Sum_probs=59.2
Q ss_pred EEEecCCCChHHHHHHHHhhccCcccceeeeeccCcccccccccCCEEEEecCC---------CCCChhHHHhHhhhccC
Q 001840 879 YRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDLW---------WNPTTEDQAVDRAHRIG 949 (1007)
Q Consensus 879 ~~~i~Gs~s~~~R~~~I~~F~~~~~~~VlLlStkagg~GLNL~~A~~VI~~Dp~---------WNp~~e~QaigRi~RiG 949 (1007)
+..++|+++.++|..+.+.|+++ .++||+ +|.+++.|+|+.+ .+||++|.+ +++..+.|++||++|.|
T Consensus 288 v~~~hagl~~~eR~~ve~~f~~g-~i~VLv-aT~~la~Gvnipa-~~VII~~~~~~~~~~~~~~s~~~~~Qm~GRAGR~g 364 (674)
T PRK01172 288 VAFHHAGLSNEQRRFIEEMFRNR-YIKVIV-ATPTLAAGVNLPA-RLVIVRDITRYGNGGIRYLSNMEIKQMIGRAGRPG 364 (674)
T ss_pred EEEecCCCCHHHHHHHHHHHHcC-CCeEEE-ecchhhccCCCcc-eEEEEcCceEeCCCCceeCCHHHHHHHhhcCCCCC
Confidence 45679999999999999999965 677766 6699999999985 678887653 45667889999999999
Q ss_pred Cccc
Q 001840 950 QTRP 953 (1007)
Q Consensus 950 Q~k~ 953 (1007)
....
T Consensus 365 ~d~~ 368 (674)
T PRK01172 365 YDQY 368 (674)
T ss_pred CCCc
Confidence 7655
No 54
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=99.64 E-value=2.3e-14 Score=164.59 Aligned_cols=105 Identities=14% Similarity=0.151 Sum_probs=86.0
Q ss_pred eEEEEecchhHHHHHHHHHhhcCC--eEEEecCCCChHHHHHH----HHhhccCcccceeeeeccCcccccccccCCEEE
Q 001840 854 KSIVFSQWTRMLDLVENSLNQHCI--QYRRLDGTMSLPARDRA----VKDFNTDREITVMLMSLKAGNLGLNMVAASHVI 927 (1007)
Q Consensus 854 KvIIFsq~~~~ld~L~~~L~~~gi--~~~~i~Gs~s~~~R~~~----I~~F~~~~~~~VlLlStkagg~GLNL~~A~~VI 927 (1007)
++|||++....++.+...|.+.+. .+..++|.++..+|.+. ++.|.++ ...| |++|++.+.|+|+ .++.||
T Consensus 224 ~~lVf~~t~~~~~~~~~~L~~~~~~~~~~~~h~~~~~~~r~~~~~~~~~~f~~~-~~~i-lvaT~~~~~GiDi-~~~~vi 300 (358)
T TIGR01587 224 KIAIIVNTVDRAQEFYQQLKENAPEEEIMLLHSRFTEKDRAKKEAELLEEMKKN-EKFV-IVATQVIEASLDI-SADVMI 300 (358)
T ss_pred eEEEEECCHHHHHHHHHHHHhhcCCCeEEEEECCCCHHHHHHHHHHHHHHhcCC-CCeE-EEECcchhceecc-CCCEEE
Confidence 999999999999999999988876 48899999999999764 8889864 4455 5577999999999 588999
Q ss_pred EecCCCCCChhHHHhHhhhccCCcc----cEEEEEEEeCC
Q 001840 928 LLDLWWNPTTEDQAVDRAHRIGQTR----PVTVTRLTIRD 963 (1007)
Q Consensus 928 ~~Dp~WNp~~e~QaigRi~RiGQ~k----~V~VyrLi~~~ 963 (1007)
.++.+ +..+.|++||++|.|... .|+|+.....+
T Consensus 301 ~~~~~--~~~~iqr~GR~gR~g~~~~~~~~~~v~~~~~~~ 338 (358)
T TIGR01587 301 TELAP--IDSLIQRLGRLHRYGRKNGENFEVYIITIAPEG 338 (358)
T ss_pred EcCCC--HHHHHHHhccccCCCCCCCCCCeEEEEeecCCC
Confidence 88765 788999999999999864 35555544433
No 55
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=99.63 E-value=3.6e-14 Score=174.19 Aligned_cols=106 Identities=14% Similarity=0.087 Sum_probs=79.1
Q ss_pred eEEEEecchhHHHHHHHHHhhc-----CCeEEEecCCCChH---------------------HHHHHHHhhccCccccee
Q 001840 854 KSIVFSQWTRMLDLVENSLNQH-----CIQYRRLDGTMSLP---------------------ARDRAVKDFNTDREITVM 907 (1007)
Q Consensus 854 KvIIFsq~~~~ld~L~~~L~~~-----gi~~~~i~Gs~s~~---------------------~R~~~I~~F~~~~~~~Vl 907 (1007)
|.+|||-....+..+.+.|.+. +...+.++|+...+ ...+++++|.++..++++
T Consensus 516 kamvv~~sr~~a~~~~~~l~~~~~~~~~~~~vv~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fk~~~~~~il 595 (667)
T TIGR00348 516 KAMVVAISRYACVEEKNALDEELNEKFEASAIVMTGKESDDAEIRDYNKHIRTKFDKSDGFEIYYKDLERFKKEENPKLL 595 (667)
T ss_pred ceeEEEecHHHHHHHHHHHHhhcccccCCeeEEecCCccchhHHHHHHHHhccccccchhhhHHHHHHHHhcCCCCceEE
Confidence 8899999988888887777554 34556677765433 234789999876566666
Q ss_pred eeeccCcccccccccCCEEEEecCCCCCChhHHHhHhhhcc-CCcc-cEEEEEEEe
Q 001840 908 LMSLKAGNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRI-GQTR-PVTVTRLTI 961 (1007)
Q Consensus 908 LlStkagg~GLNL~~A~~VI~~Dp~WNp~~e~QaigRi~Ri-GQ~k-~V~VyrLi~ 961 (1007)
++. +...+|.+....+++++.-|.-.. ...|++||+.|+ +-.| ...|+.|+-
T Consensus 596 IVv-dmllTGFDaP~l~tLyldKplk~h-~LlQai~R~nR~~~~~K~~g~IvDy~g 649 (667)
T TIGR00348 596 IVV-DMLLTGFDAPILNTLYLDKPLKYH-GLLQAIARTNRIDGKDKTFGLIVDYRG 649 (667)
T ss_pred EEE-cccccccCCCccceEEEecccccc-HHHHHHHHhccccCCCCCCEEEEECcC
Confidence 644 999999999999999998887665 468999999995 5444 467766654
No 56
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=99.62 E-value=1.9e-14 Score=149.10 Aligned_cols=108 Identities=19% Similarity=0.332 Sum_probs=96.7
Q ss_pred eEEEEecchhHHHHHHHHHhhcCCeEEEecCCCChHHHHHHHHhhccCcccceeeeeccCcccccccccCCEEEEecCCC
Q 001840 854 KSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDLWW 933 (1007)
Q Consensus 854 KvIIFsq~~~~ld~L~~~L~~~gi~~~~i~Gs~s~~~R~~~I~~F~~~~~~~VlLlStkagg~GLNL~~A~~VI~~Dp~W 933 (1007)
..||||+-....|+|.+.++...+.+..++|.|++++|++++++|+.+ .-+||+ +|++-+.|++.+..+.||+||+|-
T Consensus 268 QavIFcnTk~kVdwLtekm~~~nftVssmHGDm~qkERd~im~dFRsg-~SrvLi-tTDVwaRGiDv~qVslviNYDLP~ 345 (400)
T KOG0328|consen 268 QAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMEQKERDKIMNDFRSG-KSRVLI-TTDVWARGIDVQQVSLVINYDLPN 345 (400)
T ss_pred eEEEEecccchhhHHHHHHHhhCceeeeccCCcchhHHHHHHHHhhcC-CceEEE-EechhhccCCcceeEEEEecCCCc
Confidence 789999999999999999999999999999999999999999999976 445555 779999999999999999999999
Q ss_pred CCChhHHHhHhhhccCCcccEEEEEEEeCCCH
Q 001840 934 NPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTV 965 (1007)
Q Consensus 934 Np~~e~QaigRi~RiGQ~k~V~VyrLi~~~TI 965 (1007)
|+..+..||||.+|+|.+- .+.+|+..+.+
T Consensus 346 nre~YIHRIGRSGRFGRkG--vainFVk~~d~ 375 (400)
T KOG0328|consen 346 NRELYIHRIGRSGRFGRKG--VAINFVKSDDL 375 (400)
T ss_pred cHHHHhhhhccccccCCcc--eEEEEecHHHH
Confidence 9999999999999999763 34466666533
No 57
>PRK00254 ski2-like helicase; Provisional
Probab=99.62 E-value=5.1e-14 Score=175.48 Aligned_cols=84 Identities=14% Similarity=0.022 Sum_probs=63.8
Q ss_pred eEEEecCCCChHHHHHHHHhhccCcccceeeeeccCcccccccccCCEEEE-------ecCCCC-CChhHHHhHhhhccC
Q 001840 878 QYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVIL-------LDLWWN-PTTEDQAVDRAHRIG 949 (1007)
Q Consensus 878 ~~~~i~Gs~s~~~R~~~I~~F~~~~~~~VlLlStkagg~GLNL~~A~~VI~-------~Dp~WN-p~~e~QaigRi~RiG 949 (1007)
.+..++|+++.++|..+.+.|+++ .++||+ +|.+.+.|+|+.+...||. ++.+.- ...+.|++||++|.|
T Consensus 297 gv~~hHagl~~~eR~~ve~~F~~G-~i~VLv-aT~tLa~Gvnipa~~vVI~~~~~~~~~~~~~~~~~~~~Qm~GRAGR~~ 374 (720)
T PRK00254 297 GVAFHHAGLGRTERVLIEDAFREG-LIKVIT-ATPTLSAGINLPAFRVIIRDTKRYSNFGWEDIPVLEIQQMMGRAGRPK 374 (720)
T ss_pred CEEEeCCCCCHHHHHHHHHHHHCC-CCeEEE-eCcHHhhhcCCCceEEEECCceEcCCCCceeCCHHHHHHhhhccCCCC
Confidence 467889999999999999999965 677766 6699999999988777774 222222 336799999999998
Q ss_pred CcccEEEEEEEeCC
Q 001840 950 QTRPVTVTRLTIRD 963 (1007)
Q Consensus 950 Q~k~V~VyrLi~~~ 963 (1007)
..+.-.++-++..+
T Consensus 375 ~d~~G~~ii~~~~~ 388 (720)
T PRK00254 375 YDEVGEAIIVATTE 388 (720)
T ss_pred cCCCceEEEEecCc
Confidence 77654555555443
No 58
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.61 E-value=2.6e-14 Score=154.34 Aligned_cols=120 Identities=23% Similarity=0.227 Sum_probs=104.1
Q ss_pred eEEEEecchhHHHHHHHHHhhcCCeEEEecCCCChHHHHHHHHhhccCcccceeeeeccCcccccccccCCEEEEecCCC
Q 001840 854 KSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDLWW 933 (1007)
Q Consensus 854 KvIIFsq~~~~ld~L~~~L~~~gi~~~~i~Gs~s~~~R~~~I~~F~~~~~~~VlLlStkagg~GLNL~~A~~VI~~Dp~W 933 (1007)
-+||||.-..+.+.+.-.|+..|+....++|.|++..|..+++.|+++ ...||+ +|++++.||+.+.+++||+||.|-
T Consensus 302 s~iVF~~t~~tt~~la~~L~~lg~~a~~LhGqmsq~~Rlg~l~~Fk~~-~r~iLv-~TDVaSRGLDip~Vd~VVNyDiP~ 379 (476)
T KOG0330|consen 302 SVIVFCNTCNTTRFLALLLRNLGFQAIPLHGQMSQSKRLGALNKFKAG-ARSILV-CTDVASRGLDIPHVDVVVNYDIPT 379 (476)
T ss_pred cEEEEEeccchHHHHHHHHHhcCcceecccchhhHHHHHHHHHHHhcc-CCcEEE-ecchhcccCCCCCceEEEecCCCC
Confidence 789999999999999999999999999999999999999999999975 445555 779999999999999999999999
Q ss_pred CCChhHHHhHhhhccCCcccEEEEEEEeCCCHHH--HHHHHHHHHH
Q 001840 934 NPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVED--RILKLQDDKR 977 (1007)
Q Consensus 934 Np~~e~QaigRi~RiGQ~k~V~VyrLi~~~TIEe--~I~~lq~~K~ 977 (1007)
+-..|..|.||+.|.| +.-.+..|++.-.||- +|.....+|.
T Consensus 380 ~skDYIHRvGRtaRaG--rsG~~ItlVtqyDve~~qrIE~~~gkkl 423 (476)
T KOG0330|consen 380 HSKDYIHRVGRTARAG--RSGKAITLVTQYDVELVQRIEHALGKKL 423 (476)
T ss_pred cHHHHHHHcccccccC--CCcceEEEEehhhhHHHHHHHHHHhcCC
Confidence 9999999999999999 6667777888765553 4444444443
No 59
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=99.61 E-value=2.4e-14 Score=172.56 Aligned_cols=115 Identities=11% Similarity=0.087 Sum_probs=97.3
Q ss_pred chhhHHHHHHHHHhhhhcccccchhhhhhcccCCCCCccccCCCCCCCCeEEEEecchhHHHHHHHHHhhcCCeEEEecC
Q 001840 805 ISSKIRTVLDILHTQCELNTKCSIVEIHDLAGSNGSSAVHSKSPIEGPIKSIVFSQWTRMLDLVENSLNQHCIQYRRLDG 884 (1007)
Q Consensus 805 ~SsKl~~l~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvIIFsq~~~~ld~L~~~L~~~gi~~~~i~G 884 (1007)
...|+.++++.+.+....+. .+||||......+.|...|.+.|+++..++|
T Consensus 406 ~~~K~~ai~~~i~~~~~~~~-----------------------------pvLIft~s~~~se~ls~~L~~~gi~~~~L~a 456 (762)
T TIGR03714 406 LPEKLMATLEDVKEYHETGQ-----------------------------PVLLITGSVEMSEIYSELLLREGIPHNLLNA 456 (762)
T ss_pred HHHHHHHHHHHHHHHhhCCC-----------------------------CEEEEECcHHHHHHHHHHHHHCCCCEEEecC
Confidence 46799999999988766655 8999999999999999999999999999999
Q ss_pred CCChHHHHHHHHhhccCcccceeeeeccCcccccccc---------cCCEEEEecCCCCCChhHHHhHhhhccCCccc
Q 001840 885 TMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMV---------AASHVILLDLWWNPTTEDQAVDRAHRIGQTRP 953 (1007)
Q Consensus 885 s~s~~~R~~~I~~F~~~~~~~VlLlStkagg~GLNL~---------~A~~VI~~Dp~WNp~~e~QaigRi~RiGQ~k~ 953 (1007)
.+...+|..+...|+.+ .| +++|+.+|.|+++. ..++|+.++++-+. .+.|++||+.|.|..=.
T Consensus 457 ~~~~~E~~ii~~ag~~g---~V-lIATdmAgRGtDI~l~~~v~~~GGL~vIit~~~ps~r-id~qr~GRtGRqG~~G~ 529 (762)
T TIGR03714 457 QNAAKEAQIIAEAGQKG---AV-TVATSMAGRGTDIKLGKGVAELGGLAVIGTERMENSR-VDLQLRGRSGRQGDPGS 529 (762)
T ss_pred CChHHHHHHHHHcCCCC---eE-EEEccccccccCCCCCccccccCCeEEEEecCCCCcH-HHHHhhhcccCCCCcee
Confidence 99887776666666543 44 56889999999998 77899999999665 44999999999997744
No 60
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.61 E-value=3e-15 Score=145.44 Aligned_cols=121 Identities=27% Similarity=0.420 Sum_probs=108.0
Q ss_pred hhhHHHHHHHHHhhhhcccccchhhhhhcccCCCCCccccCCCCCCCCeEEEEecchhHHHHHHHHHhhcCCeEEEecCC
Q 001840 806 SSKIRTVLDILHTQCELNTKCSIVEIHDLAGSNGSSAVHSKSPIEGPIKSIVFSQWTRMLDLVENSLNQHCIQYRRLDGT 885 (1007)
Q Consensus 806 SsKl~~l~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvIIFsq~~~~ld~L~~~L~~~gi~~~~i~Gs 885 (1007)
+.|+..+.+.+......+. ++|||+.....++.+.+.|.+.++.+..++|+
T Consensus 11 ~~k~~~i~~~i~~~~~~~~-----------------------------~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~ 61 (131)
T cd00079 11 DEKLEALLELLKEHLKKGG-----------------------------KVLIFCPSKKMLDELAELLRKPGIKVAALHGD 61 (131)
T ss_pred HHHHHHHHHHHHhcccCCC-----------------------------cEEEEeCcHHHHHHHHHHHHhcCCcEEEEECC
Confidence 3699999988887654333 99999999999999999999999999999999
Q ss_pred CChHHHHHHHHhhccCcccceeeeeccCcccccccccCCEEEEecCCCCCChhHHHhHhhhccCCcccEEEE
Q 001840 886 MSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVT 957 (1007)
Q Consensus 886 ~s~~~R~~~I~~F~~~~~~~VlLlStkagg~GLNL~~A~~VI~~Dp~WNp~~e~QaigRi~RiGQ~k~V~Vy 957 (1007)
++..+|..+++.|+++. ..+|+++.++++|+|++.+++||+++++|++..+.|++||++|.||+..|+++
T Consensus 62 ~~~~~~~~~~~~f~~~~--~~ili~t~~~~~G~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~~~~ 131 (131)
T cd00079 62 GSQEEREEVLKDFREGE--IVVLVATDVIARGIDLPNVSVVINYDLPWSPSSYLQRIGRAGRAGQKGTAILL 131 (131)
T ss_pred CCHHHHHHHHHHHHcCC--CcEEEEcChhhcCcChhhCCEEEEeCCCCCHHHheecccccccCCCCceEEeC
Confidence 99999999999999764 44555789999999999999999999999999999999999999998877764
No 61
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=99.60 E-value=2.1e-13 Score=166.03 Aligned_cols=101 Identities=25% Similarity=0.348 Sum_probs=84.8
Q ss_pred eEEEEecchhHHHHHHHHHhhcCCeEEEecCCCChHHHH-----HHHHhhcc----Cc-----ccceeeeeccCcccccc
Q 001840 854 KSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARD-----RAVKDFNT----DR-----EITVMLMSLKAGNLGLN 919 (1007)
Q Consensus 854 KvIIFsq~~~~ld~L~~~L~~~gi~~~~i~Gs~s~~~R~-----~~I~~F~~----~~-----~~~VlLlStkagg~GLN 919 (1007)
++|||++....++.|...|.+.++ ..++|.|++.+|. +++++|.+ +. .-..+|++|++++.||+
T Consensus 274 ~vLVF~NTv~~Aq~L~~~L~~~g~--~lLHG~m~q~dR~~~~~~~il~~Fk~~~~~g~~~~~~~g~~ILVATdVaerGLD 351 (844)
T TIGR02621 274 AILVFCRTVKHVRKVFAKLPKEKF--ELLTGTLRGAERDDLVKKEIFNRFLPQMLSGSRARPQQGTVYLVCTSAGEVGVN 351 (844)
T ss_pred cEEEEECCHHHHHHHHHHHHhcCC--eEeeCCCCHHHHhhHHHHHHHHHHhccccccccccccccceEEeccchhhhccc
Confidence 899999999999999999999887 8999999999999 78899986 21 11356788999999999
Q ss_pred cccCCEEEEecCCCCCChhHHHhHhhhccCCccc--EEEEEE
Q 001840 920 MVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRP--VTVTRL 959 (1007)
Q Consensus 920 L~~A~~VI~~Dp~WNp~~e~QaigRi~RiGQ~k~--V~VyrL 959 (1007)
+.. ++||+++.++ ..+.||+||++|.|.... ++|+.+
T Consensus 352 Id~-d~VI~d~aP~--esyIQRiGRtgR~G~~~~~~i~vv~~ 390 (844)
T TIGR02621 352 ISA-DHLVCDLAPF--ESMQQRFGRVNRFGELQACQIAVVHL 390 (844)
T ss_pred CCc-ceEEECCCCH--HHHHHHhcccCCCCCCCCceEEEEee
Confidence 975 9999877764 789999999999999644 455433
No 62
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=99.58 E-value=4.2e-13 Score=160.16 Aligned_cols=114 Identities=14% Similarity=0.138 Sum_probs=95.3
Q ss_pred chhhHHHHHHHHHhhhhcccccchhhhhhcccCCCCCccccCCCCCCCCeEEEEecchhHHHHHHHHHhhcCCeEEEecC
Q 001840 805 ISSKIRTVLDILHTQCELNTKCSIVEIHDLAGSNGSSAVHSKSPIEGPIKSIVFSQWTRMLDLVENSLNQHCIQYRRLDG 884 (1007)
Q Consensus 805 ~SsKl~~l~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvIIFsq~~~~ld~L~~~L~~~gi~~~~i~G 884 (1007)
...|+.++++.+......+. .+|||+......+.|...|.+.|+++..|+|
T Consensus 455 ~~~K~~aL~~~i~~~~~~~~-----------------------------pvLIft~t~~~se~L~~~L~~~gi~~~~Lhg 505 (656)
T PRK12898 455 AAAKWAAVAARVRELHAQGR-----------------------------PVLVGTRSVAASERLSALLREAGLPHQVLNA 505 (656)
T ss_pred HHHHHHHHHHHHHHHHhcCC-----------------------------CEEEEeCcHHHHHHHHHHHHHCCCCEEEeeC
Confidence 35699999999887654444 7999999999999999999999999999999
Q ss_pred CCChHHHHHHHHhhccCcccceeeeeccCcccccccc---cCC-----EEEEecCCCCCChhHHHhHhhhccCCc
Q 001840 885 TMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMV---AAS-----HVILLDLWWNPTTEDQAVDRAHRIGQT 951 (1007)
Q Consensus 885 s~s~~~R~~~I~~F~~~~~~~VlLlStkagg~GLNL~---~A~-----~VI~~Dp~WNp~~e~QaigRi~RiGQ~ 951 (1007)
.+. +|++.+..|... ... ++++|+.+|.|+++. ... |||++|.|-|...+.|++||+.|.|..
T Consensus 506 ~~~--~rE~~ii~~ag~-~g~-VlVATdmAgRGtDI~l~~~V~~~GGLhVI~~d~P~s~r~y~hr~GRTGRqG~~ 576 (656)
T PRK12898 506 KQD--AEEAAIVARAGQ-RGR-ITVATNMAGRGTDIKLEPGVAARGGLHVILTERHDSARIDRQLAGRCGRQGDP 576 (656)
T ss_pred CcH--HHHHHHHHHcCC-CCc-EEEEccchhcccCcCCccchhhcCCCEEEEcCCCCCHHHHHHhcccccCCCCC
Confidence 864 666666666643 223 456889999999988 343 999999999999999999999999976
No 63
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=99.58 E-value=2.9e-13 Score=157.92 Aligned_cols=74 Identities=15% Similarity=0.244 Sum_probs=64.9
Q ss_pred CCeEEEecCCCChHHHHHHHHhhccCcccceeeeeccCcccccccccCCEEEEecCC-CCCChhHHHhHhhhccCCc
Q 001840 876 CIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDLW-WNPTTEDQAVDRAHRIGQT 951 (1007)
Q Consensus 876 gi~~~~i~Gs~s~~~R~~~I~~F~~~~~~~VlLlStkagg~GLNL~~A~~VI~~Dp~-WNp~~e~QaigRi~RiGQ~ 951 (1007)
++.+..++|.|+.+++++++++|+++ ++.||+ ||.+.-+|+|..+|+.+|++|+. +--+...|--||++|=+..
T Consensus 507 ~~~vgL~HGrm~~~eKd~vM~~Fk~~-e~~ILV-aTTVIEVGVdVPnATvMVIe~AERFGLaQLHQLRGRVGRG~~q 581 (677)
T COG1200 507 ELKVGLVHGRMKPAEKDAVMEAFKEG-EIDILV-ATTVIEVGVDVPNATVMVIENAERFGLAQLHQLRGRVGRGDLQ 581 (677)
T ss_pred cceeEEEecCCChHHHHHHHHHHHcC-CCcEEE-EeeEEEecccCCCCeEEEEechhhhhHHHHHHhccccCCCCcc
Confidence 45678999999999999999999975 666666 77899999999999999999987 7788999999999996544
No 64
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=99.57 E-value=4e-13 Score=163.61 Aligned_cols=116 Identities=12% Similarity=0.106 Sum_probs=99.1
Q ss_pred chhhHHHHHHHHHhhhhcccccchhhhhhcccCCCCCccccCCCCCCCCeEEEEecchhHHHHHHHHHhhcCCeEEEecC
Q 001840 805 ISSKIRTVLDILHTQCELNTKCSIVEIHDLAGSNGSSAVHSKSPIEGPIKSIVFSQWTRMLDLVENSLNQHCIQYRRLDG 884 (1007)
Q Consensus 805 ~SsKl~~l~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvIIFsq~~~~ld~L~~~L~~~gi~~~~i~G 884 (1007)
...|+.++++.+......+. ++||||......+.|...|.+.|+++..++|
T Consensus 410 ~~~K~~al~~~i~~~~~~~~-----------------------------pvLIf~~t~~~se~l~~~L~~~gi~~~~L~~ 460 (790)
T PRK09200 410 LDEKYKAVIEEVKERHETGR-----------------------------PVLIGTGSIEQSETFSKLLDEAGIPHNLLNA 460 (790)
T ss_pred HHHHHHHHHHHHHHHHhcCC-----------------------------CEEEEeCcHHHHHHHHHHHHHCCCCEEEecC
Confidence 35799999999877644454 8999999999999999999999999999999
Q ss_pred CCChHHHHHHHHhhccCcccceeeeeccCccccccc---ccCC-----EEEEecCCCCCChhHHHhHhhhccCCccc
Q 001840 885 TMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNM---VAAS-----HVILLDLWWNPTTEDQAVDRAHRIGQTRP 953 (1007)
Q Consensus 885 s~s~~~R~~~I~~F~~~~~~~VlLlStkagg~GLNL---~~A~-----~VI~~Dp~WNp~~e~QaigRi~RiGQ~k~ 953 (1007)
.+...++..+...|+.+ .| +++|+.+|.|+++ .... |||++|+|-|+..+.|++||+.|.|..=.
T Consensus 461 ~~~~~e~~~i~~ag~~g---~V-lIATdmAgRG~DI~l~~~V~~~GGL~VI~~d~p~s~r~y~qr~GRtGR~G~~G~ 533 (790)
T PRK09200 461 KNAAKEAQIIAEAGQKG---AV-TVATNMAGRGTDIKLGEGVHELGGLAVIGTERMESRRVDLQLRGRSGRQGDPGS 533 (790)
T ss_pred CccHHHHHHHHHcCCCC---eE-EEEccchhcCcCCCcccccccccCcEEEeccCCCCHHHHHHhhccccCCCCCee
Confidence 99877777666666543 44 5677999999999 4666 99999999999999999999999998743
No 65
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.55 E-value=5.4e-14 Score=165.68 Aligned_cols=106 Identities=14% Similarity=0.202 Sum_probs=86.6
Q ss_pred CeEEEEecchhHHHHHHHHHhhc-----CCeEEEecCCCChHHHHHHHHhhccCcccceeeeeccCcccccccccCCEEE
Q 001840 853 IKSIVFSQWTRMLDLVENSLNQH-----CIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVI 927 (1007)
Q Consensus 853 ~KvIIFsq~~~~ld~L~~~L~~~-----gi~~~~i~Gs~s~~~R~~~I~~F~~~~~~~VlLlStkagg~GLNL~~A~~VI 927 (1007)
.|.||||.....++++...|... |-=+..|+|... +-++.|++|-.......+.+|.+.+-+|++...+..++
T Consensus 427 ~KTIvFa~n~dHAe~i~~~~~~~ype~~~~~a~~IT~d~~--~~q~~Id~f~~ke~~P~IaitvdlL~TGiDvpev~nlV 504 (875)
T COG4096 427 GKTIVFAKNHDHAERIREALVNEYPEYNGRYAMKITGDAE--QAQALIDNFIDKEKYPRIAITVDLLTTGVDVPEVVNLV 504 (875)
T ss_pred CceEEEeeCcHHHHHHHHHHHHhCccccCceEEEEeccch--hhHHHHHHHHhcCCCCceEEehhhhhcCCCchheeeee
Confidence 49999999999999999999876 233456888864 55578999987545556677889999999999999999
Q ss_pred EecCCCCCChhHHHhHhhhcc-------CCccc-EEEEEEE
Q 001840 928 LLDLWWNPTTEDQAVDRAHRI-------GQTRP-VTVTRLT 960 (1007)
Q Consensus 928 ~~Dp~WNp~~e~QaigRi~Ri-------GQ~k~-V~VyrLi 960 (1007)
|+-+--+-....|-+||.-|+ ||.|. .+|+.|+
T Consensus 505 F~r~VrSktkF~QMvGRGTRl~~~~~~~~~dK~~F~ifDf~ 545 (875)
T COG4096 505 FDRKVRSKTKFKQMVGRGTRLCPDLGGPEQDKEFFTIFDFV 545 (875)
T ss_pred ehhhhhhHHHHHHHhcCccccCccccCccccceeEEEEEhh
Confidence 999999999999999999996 45554 6666654
No 66
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.55 E-value=6.6e-13 Score=150.31 Aligned_cols=102 Identities=22% Similarity=0.309 Sum_probs=94.2
Q ss_pred CeEEEEecchhHHHHHHHHHhhcCCeEEEecCCCChHHHHHHHHhhccCcccceeeeeccCcccccccccCCEEEEecCC
Q 001840 853 IKSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDLW 932 (1007)
Q Consensus 853 ~KvIIFsq~~~~ld~L~~~L~~~gi~~~~i~Gs~s~~~R~~~I~~F~~~~~~~VlLlStkagg~GLNL~~A~~VI~~Dp~ 932 (1007)
++++||+.-.+.++.|+..|...++++..|+|.-++.+|.++++.|... .+.||+ .|.+++.|||.....|||+||.|
T Consensus 338 e~tlvFvEt~~~~d~l~~~l~~~~~~~~sIhg~~tq~er~~al~~Fr~g-~~pvlV-aT~VaaRGlDi~~V~hVInyDmP 415 (482)
T KOG0335|consen 338 EKTLVFVETKRGADELAAFLSSNGYPAKSIHGDRTQIEREQALNDFRNG-KAPVLV-ATNVAARGLDIPNVKHVINYDMP 415 (482)
T ss_pred ceEEEEeeccchhhHHHHHHhcCCCCceeecchhhhhHHHHHHHHhhcC-CcceEE-EehhhhcCCCCCCCceeEEeecC
Confidence 4999999999999999999999999999999999999999999999976 666666 55999999999999999999999
Q ss_pred CCCChhHHHhHhhhccCCcccEEE
Q 001840 933 WNPTTEDQAVDRAHRIGQTRPVTV 956 (1007)
Q Consensus 933 WNp~~e~QaigRi~RiGQ~k~V~V 956 (1007)
-+-..+..||||.+|-|+.=-.+.
T Consensus 416 ~d~d~YvHRIGRTGR~Gn~G~ats 439 (482)
T KOG0335|consen 416 ADIDDYVHRIGRTGRVGNGGRATS 439 (482)
T ss_pred cchhhHHHhccccccCCCCceeEE
Confidence 999999999999999999855444
No 67
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=99.53 E-value=1.5e-13 Score=164.71 Aligned_cols=115 Identities=16% Similarity=0.146 Sum_probs=101.7
Q ss_pred hhhHHHHHHHHHhhhhcccccchhhhhhcccCCCCCccccCCCCCCCCeEEEEecchhHHHHHHHHHhhcCCeEEEecCC
Q 001840 806 SSKIRTVLDILHTQCELNTKCSIVEIHDLAGSNGSSAVHSKSPIEGPIKSIVFSQWTRMLDLVENSLNQHCIQYRRLDGT 885 (1007)
Q Consensus 806 SsKl~~l~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvIIFsq~~~~ld~L~~~L~~~gi~~~~i~Gs 885 (1007)
..|+.++++.+.+....+. .+||||......+.|...|.+.|+++..++|.
T Consensus 388 ~~k~~ai~~~i~~~~~~gr-----------------------------pvLV~t~si~~se~ls~~L~~~gi~~~~Lna~ 438 (745)
T TIGR00963 388 EEKWKAVVDEIKERHAKGQ-----------------------------PVLVGTTSVEKSELLSNLLKERGIPHNVLNAK 438 (745)
T ss_pred HHHHHHHHHHHHHHHhcCC-----------------------------CEEEEeCcHHHHHHHHHHHHHcCCCeEEeeCC
Confidence 5689999998887777666 89999999999999999999999999999998
Q ss_pred CChHHHHHHHHhhccCcccceeeeeccCccccccccc-------CCEEEEecCCCCCChhHHHhHhhhccCCccc
Q 001840 886 MSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVA-------ASHVILLDLWWNPTTEDQAVDRAHRIGQTRP 953 (1007)
Q Consensus 886 ~s~~~R~~~I~~F~~~~~~~VlLlStkagg~GLNL~~-------A~~VI~~Dp~WNp~~e~QaigRi~RiGQ~k~ 953 (1007)
..+|++.|..|... ...|++ +|..+|.|+++.. ..|||++++|-|...+.|++||+.|.|..=.
T Consensus 439 --q~~rEa~ii~~ag~-~g~VtI-ATnmAgRGtDI~l~~V~~~GGl~VI~t~~p~s~ri~~q~~GRtGRqG~~G~ 509 (745)
T TIGR00963 439 --NHEREAEIIAQAGR-KGAVTI-ATNMAGRGTDIKLEEVKELGGLYVIGTERHESRRIDNQLRGRSGRQGDPGS 509 (745)
T ss_pred --hHHHHHHHHHhcCC-CceEEE-EeccccCCcCCCccchhhcCCcEEEecCCCCcHHHHHHHhccccCCCCCcc
Confidence 67999999999854 444555 6799999999888 6699999999999999999999999998844
No 68
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=99.51 E-value=9.9e-13 Score=146.81 Aligned_cols=124 Identities=18% Similarity=0.270 Sum_probs=107.9
Q ss_pred chhhHHHHHHHHHhhhhcccccchhhhhhcccCCCCCccccCCCCCCCCeEEEEecchhHHHHHHHHHhhcCCeEEEecC
Q 001840 805 ISSKIRTVLDILHTQCELNTKCSIVEIHDLAGSNGSSAVHSKSPIEGPIKSIVFSQWTRMLDLVENSLNQHCIQYRRLDG 884 (1007)
Q Consensus 805 ~SsKl~~l~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvIIFsq~~~~ld~L~~~L~~~gi~~~~i~G 884 (1007)
.+.|.+.|+++|.+... + .+|||.+....+|.|++.|.+.|+++++|+|
T Consensus 501 ed~k~kkL~eil~~~~~--p-----------------------------piIIFvN~kk~~d~lAk~LeK~g~~~~tlHg 549 (673)
T KOG0333|consen 501 EDEKRKKLIEILESNFD--P-----------------------------PIIIFVNTKKGADALAKILEKAGYKVTTLHG 549 (673)
T ss_pred chHHHHHHHHHHHhCCC--C-----------------------------CEEEEEechhhHHHHHHHHhhccceEEEeeC
Confidence 57899999999987622 2 8999999999999999999999999999999
Q ss_pred CCChHHHHHHHHhhccCcccceeeeeccCcccccccccCCEEEEecCCCCCChhHHHhHhhhccCCcccEEEEEEEeCC
Q 001840 885 TMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRD 963 (1007)
Q Consensus 885 s~s~~~R~~~I~~F~~~~~~~VlLlStkagg~GLNL~~A~~VI~~Dp~WNp~~e~QaigRi~RiGQ~k~V~VyrLi~~~ 963 (1007)
+.++++|+.++..|+++ ...||+ .|+++|.||+.+..++||+||..-+-..+..||||.+|-|+.-.+. -|+++.
T Consensus 550 ~k~qeQRe~aL~~fr~~-t~dIlV-aTDvAgRGIDIpnVSlVinydmaksieDYtHRIGRTgRAGk~Gtai--Sflt~~ 624 (673)
T KOG0333|consen 550 GKSQEQRENALADFREG-TGDILV-ATDVAGRGIDIPNVSLVINYDMAKSIEDYTHRIGRTGRAGKSGTAI--SFLTPA 624 (673)
T ss_pred CccHHHHHHHHHHHHhc-CCCEEE-EecccccCCCCCccceeeecchhhhHHHHHHHhccccccccCceeE--EEeccc
Confidence 99999999999999975 344555 6699999999999999999999999999999999999999874432 344444
No 69
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.51 E-value=4.3e-13 Score=148.95 Aligned_cols=105 Identities=18% Similarity=0.236 Sum_probs=90.9
Q ss_pred eEEEEecchhHHHHHHHHHh----hcCCeEEEecCCCChHHHHHHHHhhccCcccceeeeeccCcccccccccCCEEEEe
Q 001840 854 KSIVFSQWTRMLDLVENSLN----QHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILL 929 (1007)
Q Consensus 854 KvIIFsq~~~~ld~L~~~L~----~~gi~~~~i~Gs~s~~~R~~~I~~F~~~~~~~VlLlStkagg~GLNL~~A~~VI~~ 929 (1007)
++|+|+...+....+...|+ ...+.+-.++|..+.+.|.+.++.|+.+ +++||++| ++++.|+++-..+.||.|
T Consensus 431 r~lcf~~S~~sa~Rl~~~L~v~~~~~~~~~s~~t~~l~~k~r~k~l~~f~~g-~i~vLIcS-D~laRGiDv~~v~~VINY 508 (620)
T KOG0350|consen 431 RTLCFVNSVSSANRLAHVLKVEFCSDNFKVSEFTGQLNGKRRYKMLEKFAKG-DINVLICS-DALARGIDVNDVDNVINY 508 (620)
T ss_pred eEEEEecchHHHHHHHHHHHHHhccccchhhhhhhhhhHHHHHHHHHHHhcC-CceEEEeh-hhhhcCCcccccceEeec
Confidence 99999999999888888776 3356677799999999999999999976 88898877 999999999999999999
Q ss_pred cCCCCCChhHHHhHhhhccCCcccEEEEEEEeC
Q 001840 930 DLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIR 962 (1007)
Q Consensus 930 Dp~WNp~~e~QaigRi~RiGQ~k~V~VyrLi~~ 962 (1007)
|||-.-..+..|+||..|-||.- ++|.++..
T Consensus 509 d~P~~~ktyVHR~GRTARAgq~G--~a~tll~~ 539 (620)
T KOG0350|consen 509 DPPASDKTYVHRAGRTARAGQDG--YAITLLDK 539 (620)
T ss_pred CCCchhhHHHHhhcccccccCCc--eEEEeecc
Confidence 99999999999999999999873 33344433
No 70
>PRK09401 reverse gyrase; Reviewed
Probab=99.49 E-value=1.6e-12 Score=166.46 Aligned_cols=89 Identities=11% Similarity=0.106 Sum_probs=76.1
Q ss_pred eEEEEecchhH---HHHHHHHHhhcCCeEEEecCCCChHHHHHHHHhhccCcccceeeee---ccCccccccccc-CCEE
Q 001840 854 KSIVFSQWTRM---LDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMS---LKAGNLGLNMVA-ASHV 926 (1007)
Q Consensus 854 KvIIFsq~~~~---ld~L~~~L~~~gi~~~~i~Gs~s~~~R~~~I~~F~~~~~~~VlLlS---tkagg~GLNL~~-A~~V 926 (1007)
.+|||++.... ++.|...|...|+++..++|++ .+.+++|.++ ++.|||.+ +++++.||++.. ..+|
T Consensus 330 ~~LIFv~t~~~~~~ae~l~~~L~~~gi~v~~~hg~l-----~~~l~~F~~G-~~~VLVatas~tdv~aRGIDiP~~IryV 403 (1176)
T PRK09401 330 GGLIFVPSDKGKEYAEELAEYLEDLGINAELAISGF-----ERKFEKFEEG-EVDVLVGVASYYGVLVRGIDLPERIRYA 403 (1176)
T ss_pred CEEEEEecccChHHHHHHHHHHHHCCCcEEEEeCcH-----HHHHHHHHCC-CCCEEEEecCCCCceeecCCCCcceeEE
Confidence 78999998766 9999999999999999999999 2346999976 78999986 799999999998 8999
Q ss_pred EEecCCC------CCChhHHHhHhhhcc
Q 001840 927 ILLDLWW------NPTTEDQAVDRAHRI 948 (1007)
Q Consensus 927 I~~Dp~W------Np~~e~QaigRi~Ri 948 (1007)
||||.|- .......+++|.-.+
T Consensus 404 I~y~vP~~~~~~~~~~~~~~~~~r~~~~ 431 (1176)
T PRK09401 404 IFYGVPKFKFSLEEELAPPFLLLRLLSL 431 (1176)
T ss_pred EEeCCCCEEEeccccccCHHHHHHHHhh
Confidence 9999996 555666777877543
No 71
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=99.48 E-value=1.8e-13 Score=141.12 Aligned_cols=167 Identities=24% Similarity=0.291 Sum_probs=104.0
Q ss_pred ccCchHHHHHHHHHHHhhhcCCCccCceeecCCCCchHHHHHHHHHhhccccccchhhhccccccccccCCCCCCCCCcC
Q 001840 273 VNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLDDDDDNGNAG 352 (1007)
Q Consensus 273 ~~LrpyQ~~~v~wml~~e~~~~~~~GGILADdmGLGKTiqaIali~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (1007)
++|||||.+++.-++.........+.++|...+|.|||+++++++.....
T Consensus 2 ~~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~~------------------------------ 51 (184)
T PF04851_consen 2 YKLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILELAR------------------------------ 51 (184)
T ss_dssp -EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHHC------------------------------
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhcccc------------------------------
Confidence 47999999999988865433211245899999999999999988755321
Q ss_pred cccccccCCCCCCCCCCcccccccccCCCCCCCceEEEcCh-hhHHHHHHHHHHHcCCCCCeEEEEEeC--CCC------
Q 001840 353 LDKVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPA-SVLRQWARELEDKVPDKAALSVLIYHG--GSR------ 423 (1007)
Q Consensus 353 ~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tLIV~P~-sLl~QW~~Ei~k~~~~~~~l~vlv~~g--~~r------ 423 (1007)
++|||||. +|+.||.++|..+.... ..+..... ...
T Consensus 52 ---------------------------------~~l~~~p~~~l~~Q~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 96 (184)
T PF04851_consen 52 ---------------------------------KVLIVAPNISLLEQWYDEFDDFGSEK--YNFFEKSIKPAYDSKEFIS 96 (184)
T ss_dssp ---------------------------------EEEEEESSHHHHHHHHHHHHHHSTTS--EEEEE--GGGCCE-SEEET
T ss_pred ---------------------------------ceeEecCHHHHHHHHHHHHHHhhhhh--hhhcccccccccccccccc
Confidence 58999997 68999999998776532 22211110 000
Q ss_pred -CC-----CccccCCCcEEEechhhhhccCCCCCCCchhhhhhhcCcccCCcchhhhhhhhcccccccccccCCCCCCCC
Q 001840 424 -TK-----DPVELAKYDVVLTTYSIVTNEVPKQPSVDEEEADEKNGETYGLSSEFSVNKKRKKISNVSKRGKKGKKGNVN 497 (1007)
Q Consensus 424 -~~-----~~~~l~~~dVVItSy~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~k~~~~~~k~~~~ 497 (1007)
.. ........++++++|+.+.......... .+...
T Consensus 97 ~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~---------~~~~~------------------------------ 137 (184)
T PF04851_consen 97 IQDDISDKSESDNNDKDIILTTYQSLQSDIKEEKKI---------DESAR------------------------------ 137 (184)
T ss_dssp TTTEEEHHHHHCBSS-SEEEEEHHHHHHHHHH------------------------------------------------
T ss_pred cccccccccccccccccchhhHHHHHHhhccccccc---------ccchh------------------------------
Confidence 00 0112457889999999987642110000 00000
Q ss_pred CCcccCCCCccccceeEEEEccCcccCCcccHHHHHHHhcccCcEEEEeccCC
Q 001840 498 SSIDYGCGPLAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPI 550 (1007)
Q Consensus 498 ~~~~~~~~~L~~~~w~rVIlDEAH~iKN~~s~~~kal~~L~a~~r~lLTGTPi 550 (1007)
....+....+++||+||||++.+... ++.+....+.+++.|||||.
T Consensus 138 -----~~~~~~~~~~~~vI~DEaH~~~~~~~--~~~i~~~~~~~~l~lTATp~ 183 (184)
T PF04851_consen 138 -----RSYKLLKNKFDLVIIDEAHHYPSDSS--YREIIEFKAAFILGLTATPF 183 (184)
T ss_dssp -----GCHHGGGGSESEEEEETGGCTHHHHH--HHHHHHSSCCEEEEEESS-S
T ss_pred -----hhhhhccccCCEEEEehhhhcCCHHH--HHHHHcCCCCeEEEEEeCcc
Confidence 00013345678999999999865432 56666688889999999995
No 72
>KOG4284 consensus DEAD box protein [Transcription]
Probab=99.47 E-value=5.9e-13 Score=151.12 Aligned_cols=106 Identities=20% Similarity=0.228 Sum_probs=94.2
Q ss_pred eEEEEecchhHHHHHHHHHhhcCCeEEEecCCCChHHHHHHHHhhccCcccceeeeeccCcccccccccCCEEEEecCCC
Q 001840 854 KSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDLWW 933 (1007)
Q Consensus 854 KvIIFsq~~~~ld~L~~~L~~~gi~~~~i~Gs~s~~~R~~~I~~F~~~~~~~VlLlStkagg~GLNL~~A~~VI~~Dp~W 933 (1007)
..||||....-++-++..|...|+.+..|.|.|++.+|..+++.++.- .++||+ ||+..+.|++-..+|-||++|+|-
T Consensus 274 QAlVF~~~~sra~~~a~~L~ssG~d~~~ISgaM~Q~~Rl~a~~~lr~f-~~rILV-sTDLtaRGIDa~~vNLVVNiD~p~ 351 (980)
T KOG4284|consen 274 QALVFCDQISRAEPIATHLKSSGLDVTFISGAMSQKDRLLAVDQLRAF-RVRILV-STDLTARGIDADNVNLVVNIDAPA 351 (980)
T ss_pred HHHhhhhhhhhhhHHHHHhhccCCCeEEeccccchhHHHHHHHHhhhc-eEEEEE-ecchhhccCCccccceEEecCCCc
Confidence 779999999999999999999999999999999999999999998854 566665 789999999999999999999999
Q ss_pred CCChhHHHhHhhhccCCcccEEEEEEEeC
Q 001840 934 NPTTEDQAVDRAHRIGQTRPVTVTRLTIR 962 (1007)
Q Consensus 934 Np~~e~QaigRi~RiGQ~k~V~VyrLi~~ 962 (1007)
+..++..||||++|+|.. ...|..+..+
T Consensus 352 d~eTY~HRIGRAgRFG~~-G~aVT~~~~~ 379 (980)
T KOG4284|consen 352 DEETYFHRIGRAGRFGAH-GAAVTLLEDE 379 (980)
T ss_pred chHHHHHHhhhccccccc-ceeEEEeccc
Confidence 999999999999999954 4555444443
No 73
>PRK05580 primosome assembly protein PriA; Validated
Probab=99.47 E-value=2.6e-12 Score=157.96 Aligned_cols=96 Identities=18% Similarity=0.199 Sum_probs=73.0
Q ss_pred HHHHHHHHHhhc--CCeEEEecCCCC--hHHHHHHHHhhccCcccceeeeeccCcccccccccCCEEEEecCC---CCC-
Q 001840 864 MLDLVENSLNQH--CIQYRRLDGTMS--LPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDLW---WNP- 935 (1007)
Q Consensus 864 ~ld~L~~~L~~~--gi~~~~i~Gs~s--~~~R~~~I~~F~~~~~~~VlLlStkagg~GLNL~~A~~VI~~Dp~---WNp- 935 (1007)
-.+.+++.|.+. ++++.++++++. .+++++++++|.++ ++.||| .|+..+.|+|+...+.|+++|.+ ..|
T Consensus 438 G~e~~~e~l~~~fp~~~v~~~~~d~~~~~~~~~~~l~~f~~g-~~~ILV-gT~~iakG~d~p~v~lV~il~aD~~l~~pd 515 (679)
T PRK05580 438 GTERLEEELAELFPEARILRIDRDTTRRKGALEQLLAQFARG-EADILI-GTQMLAKGHDFPNVTLVGVLDADLGLFSPD 515 (679)
T ss_pred cHHHHHHHHHHhCCCCcEEEEeccccccchhHHHHHHHHhcC-CCCEEE-EChhhccCCCCCCcCEEEEEcCchhccCCc
Confidence 345556666655 678899999886 46799999999975 667776 56899999999999999887655 333
Q ss_pred --------ChhHHHhHhhhccCCcccEEEEEEEe
Q 001840 936 --------TTEDQAVDRAHRIGQTRPVTVTRLTI 961 (1007)
Q Consensus 936 --------~~e~QaigRi~RiGQ~k~V~VyrLi~ 961 (1007)
..+.|+.||+.|.|..-.|.+..+-.
T Consensus 516 fra~Er~~~~l~q~~GRagR~~~~g~viiqT~~p 549 (679)
T PRK05580 516 FRASERTFQLLTQVAGRAGRAEKPGEVLIQTYHP 549 (679)
T ss_pred cchHHHHHHHHHHHHhhccCCCCCCEEEEEeCCC
Confidence 46889999999988776676655433
No 74
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=99.47 E-value=5.7e-12 Score=144.16 Aligned_cols=82 Identities=15% Similarity=0.225 Sum_probs=67.3
Q ss_pred eEEEEecchhHHHHHHHHHhhcC--CeEEEecCCCChHHHHHHHHhhccCcccceeeeeccCcccccccccCCEEEEecC
Q 001840 854 KSIVFSQWTRMLDLVENSLNQHC--IQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDL 931 (1007)
Q Consensus 854 KvIIFsq~~~~ld~L~~~L~~~g--i~~~~i~Gs~s~~~R~~~I~~F~~~~~~~VlLlStkagg~GLNL~~A~~VI~~Dp 931 (1007)
|+|||++....++.+...|++.+ +.+..++|.++..+|.+.. +.. +|++|++.+.||++.. ++|| ++
T Consensus 274 k~LIf~nt~~~~~~l~~~L~~~~~~~~~~~l~g~~~~~~R~~~~-------~~~-iLVaTdv~~rGiDi~~-~~vi-~~- 342 (357)
T TIGR03158 274 RGAIILDSLDEVNRLSDLLQQQGLGDDIGRITGFAPKKDRERAM-------QFD-ILLGTSTVDVGVDFKR-DWLI-FS- 342 (357)
T ss_pred eEEEEECCHHHHHHHHHHHhhhCCCceEEeeecCCCHHHHHHhc-------cCC-EEEEecHHhcccCCCC-ceEE-EC-
Confidence 99999999999999999999875 5788899999999887653 233 5568899999999975 4666 56
Q ss_pred CCCCChhHHHhHhhh
Q 001840 932 WWNPTTEDQAVDRAH 946 (1007)
Q Consensus 932 ~WNp~~e~QaigRi~ 946 (1007)
+-++..+.||+||++
T Consensus 343 p~~~~~yiqR~GR~g 357 (357)
T TIGR03158 343 ARDAAAFWQRLGRLG 357 (357)
T ss_pred CCCHHHHhhhcccCC
Confidence 557888999999874
No 75
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.46 E-value=5.8e-14 Score=123.99 Aligned_cols=78 Identities=35% Similarity=0.525 Sum_probs=71.4
Q ss_pred HHHhhcCCeEEEecCCCChHHHHHHHHhhccCcccceeeeeccCcccccccccCCEEEEecCCCCCChhHHHhHhhhccC
Q 001840 870 NSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIG 949 (1007)
Q Consensus 870 ~~L~~~gi~~~~i~Gs~s~~~R~~~I~~F~~~~~~~VlLlStkagg~GLNL~~A~~VI~~Dp~WNp~~e~QaigRi~RiG 949 (1007)
+.|+..|+.+..++|+++.++|+.+++.|+.+ ...||+ +|.++++|+|++.+++||+++++||+..+.|++||++|.|
T Consensus 1 ~~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~~-~~~vli-~t~~~~~Gid~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~g 78 (78)
T PF00271_consen 1 KFLEKKGIKVAIIHGDMSQKERQEILKKFNSG-EIRVLI-ATDILGEGIDLPDASHVIFYDPPWSPEEYIQRIGRAGRIG 78 (78)
T ss_dssp HHHHHTTSSEEEESTTSHHHHHHHHHHHHHTT-SSSEEE-ESCGGTTSSTSTTESEEEESSSESSHHHHHHHHTTSSTTT
T ss_pred CChHHCCCcEEEEECCCCHHHHHHHHHHhhcc-CceEEE-eeccccccccccccccccccccCCCHHHHHHHhhcCCCCC
Confidence 36888999999999999999999999999976 444555 6699999999999999999999999999999999999998
No 76
>PHA02653 RNA helicase NPH-II; Provisional
Probab=99.46 E-value=3.4e-11 Score=146.13 Aligned_cols=108 Identities=15% Similarity=0.164 Sum_probs=87.2
Q ss_pred eEEEEecchhHHHHHHHHHhhc--CCeEEEecCCCChHHHHHHHHhhccCcccceeeeeccCcccccccccCCEEEEecC
Q 001840 854 KSIVFSQWTRMLDLVENSLNQH--CIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDL 931 (1007)
Q Consensus 854 KvIIFsq~~~~ld~L~~~L~~~--gi~~~~i~Gs~s~~~R~~~I~~F~~~~~~~VlLlStkagg~GLNL~~A~~VI~~Dp 931 (1007)
++|||+.-...++.+.+.|.+. ++.+..++|++++ +++.+++|...+..+| |++|..++.||++...++||.++.
T Consensus 397 ~iLVFlpg~~ei~~l~~~L~~~~~~~~v~~LHG~Lsq--~eq~l~~ff~~gk~kI-LVATdIAERGIDIp~V~~VID~G~ 473 (675)
T PHA02653 397 SGIVFVASVSQCEEYKKYLEKRLPIYDFYIIHGKVPN--IDEILEKVYSSKNPSI-IISTPYLESSVTIRNATHVYDTGR 473 (675)
T ss_pred cEEEEECcHHHHHHHHHHHHhhcCCceEEeccCCcCH--HHHHHHHHhccCceeE-EeccChhhccccccCeeEEEECCC
Confidence 8999999999999999999987 7999999999985 4577788743334555 458899999999999999999972
Q ss_pred C------------CCCChhHHHhHhhhccCCcccEEEEEEEeCCCHHH
Q 001840 932 W------------WNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVED 967 (1007)
Q Consensus 932 ~------------WNp~~e~QaigRi~RiGQ~k~V~VyrLi~~~TIEe 967 (1007)
. .+.+...||.||++|. ++=.+|+|+.++...-
T Consensus 474 ~k~p~~~~g~~~~iSkasa~QRaGRAGR~---~~G~c~rLyt~~~~~p 518 (675)
T PHA02653 474 VYVPEPFGGKEMFISKSMRTQRKGRVGRV---SPGTYVYFYDLDLLKP 518 (675)
T ss_pred ccCCCcccCcccccCHHHHHHhccCcCCC---CCCeEEEEECHHHhHH
Confidence 2 2555778888888887 5678888998876543
No 77
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.43 E-value=8e-13 Score=137.05 Aligned_cols=163 Identities=26% Similarity=0.250 Sum_probs=109.9
Q ss_pred ccCchHHHHHHHHHHHhhhcCCCccCceeecCCCCchHHHHHHHHHhhccccccchhhhccccccccccCCCCCCCCCcC
Q 001840 273 VNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLDDDDDNGNAG 352 (1007)
Q Consensus 273 ~~LrpyQ~~~v~wml~~e~~~~~~~GGILADdmGLGKTiqaIali~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (1007)
.+++|||.+++..++... ...++..++|.|||..++.++......
T Consensus 7 ~~~~~~Q~~~~~~~~~~~------~~~~i~~~~GsGKT~~~~~~~~~~~~~----------------------------- 51 (201)
T smart00487 7 EPLRPYQKEAIEALLSGL------RDVILAAPTGSGKTLAALLPALEALKR----------------------------- 51 (201)
T ss_pred CCCCHHHHHHHHHHHcCC------CcEEEECCCCCchhHHHHHHHHHHhcc-----------------------------
Confidence 469999999999988431 457999999999999877777553221
Q ss_pred cccccccCCCCCCCCCCcccccccccCCCCCCCceEEEcC-hhhHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCcccc-
Q 001840 353 LDKVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCP-ASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVEL- 430 (1007)
Q Consensus 353 ~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tLIV~P-~sLl~QW~~Ei~k~~~~~~~l~vlv~~g~~r~~~~~~l- 430 (1007)
.+.+++|||+| ..+..||..++.+.+.........++++.........+
T Consensus 52 -----------------------------~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (201)
T smart00487 52 -----------------------------GKGKRVLVLVPTRELAEQWAEELKKLGPSLGLKVVGLYGGDSKREQLRKLE 102 (201)
T ss_pred -----------------------------cCCCcEEEEeCCHHHHHHHHHHHHHHhccCCeEEEEEeCCcchHHHHHHHh
Confidence 11356999999 66889999999988764322455555554422222112
Q ss_pred -CCCcEEEechhhhhccCCCCCCCchhhhhhhcCcccCCcchhhhhhhhcccccccccccCCCCCCCCCCcccCCCCccc
Q 001840 431 -AKYDVVLTTYSIVTNEVPKQPSVDEEEADEKNGETYGLSSEFSVNKKRKKISNVSKRGKKGKKGNVNSSIDYGCGPLAK 509 (1007)
Q Consensus 431 -~~~dVVItSy~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~k~~~~~~k~~~~~~~~~~~~~L~~ 509 (1007)
..++++++||+.+....... .+..
T Consensus 103 ~~~~~v~~~t~~~l~~~~~~~-------------------------------------------------------~~~~ 127 (201)
T smart00487 103 SGKTDILVTTPGRLLDLLEND-------------------------------------------------------LLEL 127 (201)
T ss_pred cCCCCEEEeChHHHHHHHHcC-------------------------------------------------------CcCH
Confidence 23399999999887643210 0233
Q ss_pred cceeEEEEccCcccCC-cc-cHHHHHHHhc-ccCcEEEEeccCCCCCh
Q 001840 510 VGWFRVVLDEAQTIKN-HR-TQVARACCSL-RAKRRWCLSGTPIQNSI 554 (1007)
Q Consensus 510 ~~w~rVIlDEAH~iKN-~~-s~~~kal~~L-~a~~r~lLTGTPi~N~l 554 (1007)
..|.++||||+|.+.+ .. ......+..+ ...+++++||||..+..
T Consensus 128 ~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~v~~saT~~~~~~ 175 (201)
T smart00487 128 SNVDLVILDEAHRLLDGGFGDQLEKLLKLLPKNVQLLLLSATPPEEIE 175 (201)
T ss_pred hHCCEEEEECHHHHhcCCcHHHHHHHHHhCCccceEEEEecCCchhHH
Confidence 4578899999999985 33 3333333444 47789999999974433
No 78
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.42 E-value=1.4e-11 Score=138.05 Aligned_cols=119 Identities=18% Similarity=0.302 Sum_probs=92.8
Q ss_pred eEEEEecchhHHHHHHHHHhhc----------------------CCeEEEecCCCChHHHHHHHHhhccCcccceeeeec
Q 001840 854 KSIVFSQWTRMLDLVENSLNQH----------------------CIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSL 911 (1007)
Q Consensus 854 KvIIFsq~~~~ld~L~~~L~~~----------------------gi~~~~i~Gs~s~~~R~~~I~~F~~~~~~~VlLlSt 911 (1007)
|+|||-.-.++++.=...|... +.++.+++|+|++++|..+.+.|...... +|++|
T Consensus 427 k~iVF~S~~d~VeFHy~lf~~~l~~~~e~~s~~~~s~g~~~l~~~~k~~rLHGsm~QeeRts~f~~Fs~~~~~--VLLcT 504 (708)
T KOG0348|consen 427 KMIVFFSCSDSVEFHYSLFSEALLSHLEGSSGAPDSEGLPPLFMDLKFYRLHGSMEQEERTSVFQEFSHSRRA--VLLCT 504 (708)
T ss_pred eeEEEEechhHHHHHHHHHHhhhhcccccccCCcccCCChhhhhcceEEEecCchhHHHHHHHHHhhccccce--EEEeh
Confidence 8899988888877666555432 34699999999999999999999976443 55577
Q ss_pred cCcccccccccCCEEEEecCCCCCChhHHHhHhhhccCCcccEEEEEEEeCCCHHHHHHHHHHHHHH
Q 001840 912 KAGNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVEDRILKLQDDKRK 978 (1007)
Q Consensus 912 kagg~GLNL~~A~~VI~~Dp~WNp~~e~QaigRi~RiGQ~k~V~VyrLi~~~TIEe~I~~lq~~K~~ 978 (1007)
++++.||+|....-||-||||..++.+..|+||.-|+|-+-.-.. |+.....| .+.....+..
T Consensus 505 DVAaRGLDlP~V~~vVQYd~P~s~adylHRvGRTARaG~kG~alL--fL~P~Eae--y~~~l~~~~~ 567 (708)
T KOG0348|consen 505 DVAARGLDLPHVGLVVQYDPPFSTADYLHRVGRTARAGEKGEALL--FLLPSEAE--YVNYLKKHHI 567 (708)
T ss_pred hhhhccCCCCCcCeEEEeCCCCCHHHHHHHhhhhhhccCCCceEE--EecccHHH--HHHHHHhhcc
Confidence 999999999999999999999999999999999999998855332 34444333 4444444443
No 79
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=99.40 E-value=1e-11 Score=139.29 Aligned_cols=135 Identities=24% Similarity=0.254 Sum_probs=112.6
Q ss_pred hhhHHHHHHHHHhhhhcccccchhhhhhcccCCCCCccccCCCCCCCCeEEEEecchhHHHHHHHHHhhc--CCeEEEec
Q 001840 806 SSKIRTVLDILHTQCELNTKCSIVEIHDLAGSNGSSAVHSKSPIEGPIKSIVFSQWTRMLDLVENSLNQH--CIQYRRLD 883 (1007)
Q Consensus 806 SsKl~~l~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvIIFsq~~~~ld~L~~~L~~~--gi~~~~i~ 883 (1007)
..||..|-..|..+++. |.|||-....-+.++.+.+.+. |++...++
T Consensus 298 ~~Ki~~L~sFI~shlk~-------------------------------K~iVF~SscKqvkf~~e~F~rlrpg~~l~~L~ 346 (758)
T KOG0343|consen 298 EDKIDMLWSFIKSHLKK-------------------------------KSIVFLSSCKQVKFLYEAFCRLRPGIPLLALH 346 (758)
T ss_pred hhHHHHHHHHHHhcccc-------------------------------ceEEEEehhhHHHHHHHHHHhcCCCCceeeec
Confidence 45888888888877654 8999999999999999999877 99999999
Q ss_pred CCCChHHHHHHHHhhccCcccceeeeeccCcccccccccCCEEEEecCCCCCChhHHHhHhhhccCCcccEEEEEEEeCC
Q 001840 884 GTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRD 963 (1007)
Q Consensus 884 Gs~s~~~R~~~I~~F~~~~~~~VlLlStkagg~GLNL~~A~~VI~~Dp~WNp~~e~QaigRi~RiGQ~k~V~VyrLi~~~ 963 (1007)
|.|++..|.++..+|... -.++|.+|++++.||++...+.||-+|.|-+..++..|.||.-|++-.-+..++ ++.
T Consensus 347 G~~~Q~~R~ev~~~F~~~--~~~vLF~TDv~aRGLDFpaVdwViQ~DCPedv~tYIHRvGRtAR~~~~G~sll~--L~p- 421 (758)
T KOG0343|consen 347 GTMSQKKRIEVYKKFVRK--RAVVLFCTDVAARGLDFPAVDWVIQVDCPEDVDTYIHRVGRTARYKERGESLLM--LTP- 421 (758)
T ss_pred cchhHHHHHHHHHHHHHh--cceEEEeehhhhccCCCcccceEEEecCchhHHHHHHHhhhhhcccCCCceEEE--Ecc-
Confidence 999999999999999864 356777889999999999999999999999999999999999999877665543 333
Q ss_pred CHHHHHHHHHHHH
Q 001840 964 TVEDRILKLQDDK 976 (1007)
Q Consensus 964 TIEe~I~~lq~~K 976 (1007)
+-||.++...++|
T Consensus 422 sEeE~~l~~Lq~k 434 (758)
T KOG0343|consen 422 SEEEAMLKKLQKK 434 (758)
T ss_pred hhHHHHHHHHHHc
Confidence 3346666555544
No 80
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=99.39 E-value=2.3e-11 Score=156.54 Aligned_cols=93 Identities=20% Similarity=0.255 Sum_probs=81.2
Q ss_pred eEEEEecchhHHHHHHHHHhhcC---------------------------------CeEEEecCCCChHHHHHHHHhhcc
Q 001840 854 KSIVFSQWTRMLDLVENSLNQHC---------------------------------IQYRRLDGTMSLPARDRAVKDFNT 900 (1007)
Q Consensus 854 KvIIFsq~~~~ld~L~~~L~~~g---------------------------------i~~~~i~Gs~s~~~R~~~I~~F~~ 900 (1007)
++|||++....++.+...|++.. +.+..++|+++.++|..+.+.|++
T Consensus 246 stLVFvNSR~~AE~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~HHGsLSkeeR~~IE~~fK~ 325 (1490)
T PRK09751 246 STIVFTNSRGLAEKLTARLNELYAARLQRSPSIAVDAAHFESTSGATSNRVQSSDVFIARSHHGSVSKEQRAITEQALKS 325 (1490)
T ss_pred CEEEECCCHHHHHHHHHHHHHhhhhhccccccccchhhhhhhccccchhccccccceeeeeccccCCHHHHHHHHHHHHh
Confidence 88999999999999988887531 114567899999999999999997
Q ss_pred CcccceeeeeccCcccccccccCCEEEEecCCCCCChhHHHhHhhhcc
Q 001840 901 DREITVMLMSLKAGNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRI 948 (1007)
Q Consensus 901 ~~~~~VlLlStkagg~GLNL~~A~~VI~~Dp~WNp~~e~QaigRi~Ri 948 (1007)
+ .+++++ +|.++..|||+...++||+|+.|.+.+.+.|++||++|.
T Consensus 326 G-~LrvLV-ATssLELGIDIg~VDlVIq~gsP~sVas~LQRiGRAGR~ 371 (1490)
T PRK09751 326 G-ELRCVV-ATSSLELGIDMGAVDLVIQVATPLSVASGLQRIGRAGHQ 371 (1490)
T ss_pred C-CceEEE-eCcHHHccCCcccCCEEEEeCCCCCHHHHHHHhCCCCCC
Confidence 6 666665 669999999999999999999999999999999999995
No 81
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.37 E-value=3.2e-12 Score=124.56 Aligned_cols=137 Identities=23% Similarity=0.232 Sum_probs=95.6
Q ss_pred CceeecCCCCchHHHHHHHHHhhccccccchhhhccccccccccCCCCCCCCCcCcccccccCCCCCCCCCCcccccccc
Q 001840 298 GGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLDDDDDNGNAGLDKVKETGESDDIKPVPEVSTSTRS 377 (1007)
Q Consensus 298 GGILADdmGLGKTiqaIali~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~ 377 (1007)
+.++...+|.|||.++++++......
T Consensus 2 ~~~i~~~~G~GKT~~~~~~~~~~~~~------------------------------------------------------ 27 (144)
T cd00046 2 DVLLAAPTGSGKTLAALLPILELLDS------------------------------------------------------ 27 (144)
T ss_pred CEEEECCCCCchhHHHHHHHHHHHhc------------------------------------------------------
Confidence 57999999999999999998664321
Q ss_pred cCCCCCCCceEEEcChhh-HHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCc--cccCCCcEEEechhhhhccCCCCCCCc
Q 001840 378 FSRRRPAAGTLVVCPASV-LRQWARELEDKVPDKAALSVLIYHGGSRTKDP--VELAKYDVVLTTYSIVTNEVPKQPSVD 454 (1007)
Q Consensus 378 ~~~~~~~~~tLIV~P~sL-l~QW~~Ei~k~~~~~~~l~vlv~~g~~r~~~~--~~l~~~dVVItSy~~l~~~~~~~~~~~ 454 (1007)
...+++||+||... +.||..++.++... ...+.++++....... ......+++++||+.+......
T Consensus 28 ----~~~~~~lv~~p~~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~i~t~~~~~~~~~~----- 96 (144)
T cd00046 28 ----LKGGQVLVLAPTRELANQVAERLKELFGE--GIKVGYLIGGTSIKQQEKLLSGKTDIVVGTPGRLLDELER----- 96 (144)
T ss_pred ----ccCCCEEEEcCcHHHHHHHHHHHHHHhhC--CcEEEEEecCcchhHHHHHhcCCCCEEEECcHHHHHHHHc-----
Confidence 12356999999875 56677777777643 4666666665543321 2346789999999988654211
Q ss_pred hhhhhhhcCcccCCcchhhhhhhhcccccccccccCCCCCCCCCCcccCCCCccccceeEEEEccCcccCCcccHHH---
Q 001840 455 EEEADEKNGETYGLSSEFSVNKKRKKISNVSKRGKKGKKGNVNSSIDYGCGPLAKVGWFRVVLDEAQTIKNHRTQVA--- 531 (1007)
Q Consensus 455 ~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~k~~~~~~k~~~~~~~~~~~~~L~~~~w~rVIlDEAH~iKN~~s~~~--- 531 (1007)
..+....|++||+||+|.+.+......
T Consensus 97 --------------------------------------------------~~~~~~~~~~iiiDE~h~~~~~~~~~~~~~ 126 (144)
T cd00046 97 --------------------------------------------------LKLSLKKLDLLILDEAHRLLNQGFGLLGLK 126 (144)
T ss_pred --------------------------------------------------CCcchhcCCEEEEeCHHHHhhcchHHHHHH
Confidence 002234588999999999988765543
Q ss_pred HHHHhcccCcEEEEeccC
Q 001840 532 RACCSLRAKRRWCLSGTP 549 (1007)
Q Consensus 532 kal~~L~a~~r~lLTGTP 549 (1007)
.........+++++||||
T Consensus 127 ~~~~~~~~~~~i~~saTp 144 (144)
T cd00046 127 ILLKLPKDRQVLLLSATP 144 (144)
T ss_pred HHhhCCccceEEEEeccC
Confidence 233344677899999998
No 82
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=99.36 E-value=2.7e-11 Score=155.61 Aligned_cols=74 Identities=16% Similarity=0.219 Sum_probs=67.9
Q ss_pred eEEEEecch---hHHHHHHHHHhhcCCeEEEecCCCChHHHHHHHHhhccCcccceeeee---ccCccccccccc-CCEE
Q 001840 854 KSIVFSQWT---RMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMS---LKAGNLGLNMVA-ASHV 926 (1007)
Q Consensus 854 KvIIFsq~~---~~ld~L~~~L~~~gi~~~~i~Gs~s~~~R~~~I~~F~~~~~~~VlLlS---tkagg~GLNL~~-A~~V 926 (1007)
++|||++.. ..++.|...|.+.|+++..++|.++ ++++++|.++ ++.||+.+ ++.++.||++.. ..+|
T Consensus 328 ~~IVFv~t~~~~~~a~~l~~~L~~~g~~a~~lhg~~~----~~~l~~Fr~G-~~~vLVata~~tdv~aRGIDip~~V~~v 402 (1171)
T TIGR01054 328 GGIVYVSIDYGKEKAEEIAEFLENHGVKAVAYHATKP----KEDYEKFAEG-EIDVLIGVASYYGTLVRGLDLPERVRYA 402 (1171)
T ss_pred CEEEEEeccccHHHHHHHHHHHHhCCceEEEEeCCCC----HHHHHHHHcC-CCCEEEEeccccCcccccCCCCccccEE
Confidence 789999998 9999999999999999999999986 3789999966 78899987 699999999999 7999
Q ss_pred EEecCC
Q 001840 927 ILLDLW 932 (1007)
Q Consensus 927 I~~Dp~ 932 (1007)
||||+|
T Consensus 403 I~~~~P 408 (1171)
T TIGR01054 403 VFLGVP 408 (1171)
T ss_pred EEECCC
Confidence 999998
No 83
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.36 E-value=3.1e-11 Score=143.52 Aligned_cols=96 Identities=17% Similarity=0.213 Sum_probs=70.6
Q ss_pred HHHHHHHhhc--CCeEEEecCCCChHHH--HHHHHhhccCcccceeeeeccCcccccccccCCEEEEecCC--CC-C---
Q 001840 866 DLVENSLNQH--CIQYRRLDGTMSLPAR--DRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDLW--WN-P--- 935 (1007)
Q Consensus 866 d~L~~~L~~~--gi~~~~i~Gs~s~~~R--~~~I~~F~~~~~~~VlLlStkagg~GLNL~~A~~VI~~Dp~--WN-p--- 935 (1007)
+.+++.|.+. +.++.++|+.++..++ +++++.|.++ ++.||+ .|+..+.|+++...+.|+++|.+ .| |
T Consensus 272 e~~~e~l~~~fp~~~v~~~d~d~~~~~~~~~~~l~~f~~g-~~~ILV-gT~~i~kG~d~~~v~lV~vl~aD~~l~~pd~r 349 (505)
T TIGR00595 272 EQVEEELAKLFPGARIARIDSDTTSRKGAHEALLNQFANG-KADILI-GTQMIAKGHHFPNVTLVGVLDADSGLHSPDFR 349 (505)
T ss_pred HHHHHHHHhhCCCCcEEEEecccccCccHHHHHHHHHhcC-CCCEEE-eCcccccCCCCCcccEEEEEcCcccccCcccc
Confidence 3444555544 6788999999876655 8999999965 666665 66899999999999998766554 33 3
Q ss_pred ------ChhHHHhHhhhccCCcccEEEEEEEeCC
Q 001840 936 ------TTEDQAVDRAHRIGQTRPVTVTRLTIRD 963 (1007)
Q Consensus 936 ------~~e~QaigRi~RiGQ~k~V~VyrLi~~~ 963 (1007)
..+.|+.||+.|-+..-.|.|..+-..+
T Consensus 350 a~E~~~~ll~q~~GRagR~~~~g~viiqt~~p~~ 383 (505)
T TIGR00595 350 AAERGFQLLTQVAGRAGRAEDPGQVIIQTYNPNH 383 (505)
T ss_pred hHHHHHHHHHHHHhccCCCCCCCEEEEEeCCCCC
Confidence 3578999999998877667655544433
No 84
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=99.36 E-value=2.5e-11 Score=142.52 Aligned_cols=101 Identities=23% Similarity=0.259 Sum_probs=93.7
Q ss_pred eEEEEecchhHHHHHHHHHhhcCCeEEEecCCCChHHHHHHHHhhccCcccceeeeeccCcccccccccCCEEEEecCCC
Q 001840 854 KSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDLWW 933 (1007)
Q Consensus 854 KvIIFsq~~~~ld~L~~~L~~~gi~~~~i~Gs~s~~~R~~~I~~F~~~~~~~VlLlStkagg~GLNL~~A~~VI~~Dp~W 933 (1007)
-.||||......+.+.++|...|+....|+|+++.++|+.+.+.|..+ ++.||+ .|.|.|-|+|=.+.-.|||||+|=
T Consensus 232 ~GIIYc~sRk~~E~ia~~L~~~g~~a~~YHaGl~~~eR~~~q~~f~~~-~~~iiV-AT~AFGMGIdKpdVRfViH~~lP~ 309 (590)
T COG0514 232 SGIIYCLTRKKVEELAEWLRKNGISAGAYHAGLSNEERERVQQAFLND-EIKVMV-ATNAFGMGIDKPDVRFVIHYDLPG 309 (590)
T ss_pred CeEEEEeeHHhHHHHHHHHHHCCCceEEecCCCCHHHHHHHHHHHhcC-CCcEEE-EeccccCccCCCCceEEEEecCCC
Confidence 469999999999999999999999999999999999999999999976 666766 559999999999999999999999
Q ss_pred CCChhHHHhHhhhccCCcccEEE
Q 001840 934 NPTTEDQAVDRAHRIGQTRPVTV 956 (1007)
Q Consensus 934 Np~~e~QaigRi~RiGQ~k~V~V 956 (1007)
+...+-|=+||++|-|..-....
T Consensus 310 s~EsYyQE~GRAGRDG~~a~ail 332 (590)
T COG0514 310 SIESYYQETGRAGRDGLPAEAIL 332 (590)
T ss_pred CHHHHHHHHhhccCCCCcceEEE
Confidence 99999999999999998876554
No 85
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=99.35 E-value=7e-11 Score=147.30 Aligned_cols=114 Identities=19% Similarity=0.218 Sum_probs=91.2
Q ss_pred eEEEEecchhHHHHHH----HHHhhcC----CeEEEecCCCChHHHHHHHHhhccCcccceeeeeccCcccccccccCCE
Q 001840 854 KSIVFSQWTRMLDLVE----NSLNQHC----IQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASH 925 (1007)
Q Consensus 854 KvIIFsq~~~~ld~L~----~~L~~~g----i~~~~i~Gs~s~~~R~~~I~~F~~~~~~~VlLlStkagg~GLNL~~A~~ 925 (1007)
|.|+|+.+...++.+. ..+...+ ..+..+.|++...+|.++...|+.+ ++.+++ ++.++-.|+++-..+.
T Consensus 308 ~tL~F~~sr~~~e~~~~~~~~~~~~~~~~l~~~v~~~~~~~~~~er~~ie~~~~~g-~~~~~~-st~AlelgidiG~lda 385 (851)
T COG1205 308 QTLVFFRSRKQVELLYLSPRRRLVREGGKLLDAVSTYRAGLHREERRRIEAEFKEG-ELLGVI-ATNALELGIDIGSLDA 385 (851)
T ss_pred eEEEEEehhhhhhhhhhchhHHHhhcchhhhhheeeccccCCHHHHHHHHHHHhcC-CccEEe-cchhhhhceeehhhhh
Confidence 9999999999999986 4444445 5678889999999999999999976 555554 8899999999999999
Q ss_pred EEEecCCC-CCChhHHHhHhhhccCCcccEEEEEEEeCCCHHHHHHH
Q 001840 926 VILLDLWW-NPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVEDRILK 971 (1007)
Q Consensus 926 VI~~Dp~W-Np~~e~QaigRi~RiGQ~k~V~VyrLi~~~TIEe~I~~ 971 (1007)
||..-.|- .-....|+.||++|-||.-.+. ...-.+.++..+..
T Consensus 386 vi~~g~P~~s~~~~~Q~~GRaGR~~~~~l~~--~v~~~~~~d~yy~~ 430 (851)
T COG1205 386 VIAYGYPGVSVLSFRQRAGRAGRRGQESLVL--VVLRSDPLDSYYLR 430 (851)
T ss_pred HhhcCCCCchHHHHHHhhhhccCCCCCceEE--EEeCCCccchhhhh
Confidence 99999887 6688999999999999553322 22226677776644
No 86
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=99.34 E-value=2e-12 Score=114.47 Aligned_cols=81 Identities=30% Similarity=0.503 Sum_probs=74.3
Q ss_pred HHHHHHhhcCCeEEEecCCCChHHHHHHHHhhccCcccceeeeeccCcccccccccCCEEEEecCCCCCChhHHHhHhhh
Q 001840 867 LVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDLWWNPTTEDQAVDRAH 946 (1007)
Q Consensus 867 ~L~~~L~~~gi~~~~i~Gs~s~~~R~~~I~~F~~~~~~~VlLlStkagg~GLNL~~A~~VI~~Dp~WNp~~e~QaigRi~ 946 (1007)
.|...|...++.+..++|+++.++|.++++.|+++. . .+|++++++++|+|++.+++||+++++||+..+.|++||++
T Consensus 2 ~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~-~-~vli~t~~~~~Gi~~~~~~~vi~~~~~~~~~~~~Q~~gR~~ 79 (82)
T smart00490 2 ELAELLKELGIKVARLHGGLSQEEREEILEKFNNGK-I-KVLVATDVAERGLDLPGVDLVIIYDLPWSPASYIQRIGRAG 79 (82)
T ss_pred HHHHHHHHCCCeEEEEECCCCHHHHHHHHHHHHcCC-C-eEEEECChhhCCcChhcCCEEEEeCCCCCHHHHHHhhcccc
Confidence 467788888999999999999999999999999753 3 66678899999999999999999999999999999999999
Q ss_pred ccC
Q 001840 947 RIG 949 (1007)
Q Consensus 947 RiG 949 (1007)
|.|
T Consensus 80 R~g 82 (82)
T smart00490 80 RAG 82 (82)
T ss_pred cCC
Confidence 987
No 87
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=99.33 E-value=5.5e-11 Score=132.71 Aligned_cols=96 Identities=20% Similarity=0.214 Sum_probs=89.2
Q ss_pred eEEEEecchhHHHHHHHHHhhcCCeEEEecCCCChHHHHHHHHhhccCcccceeeeeccCcccccccccCCEEEEecCCC
Q 001840 854 KSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDLWW 933 (1007)
Q Consensus 854 KvIIFsq~~~~ld~L~~~L~~~gi~~~~i~Gs~s~~~R~~~I~~F~~~~~~~VlLlStkagg~GLNL~~A~~VI~~Dp~W 933 (1007)
|+|||+....+.+++.+.|+...+++..|+|..++..|..+..+|.+.. ..+|++|++++.|++....+-||-||||-
T Consensus 332 KiiVF~sT~~~vk~~~~lL~~~dlpv~eiHgk~~Q~kRT~~~~~F~kae--sgIL~cTDVaARGlD~P~V~~VvQ~~~P~ 409 (543)
T KOG0342|consen 332 KIIVFFSTCMSVKFHAELLNYIDLPVLEIHGKQKQNKRTSTFFEFCKAE--SGILVCTDVAARGLDIPDVDWVVQYDPPS 409 (543)
T ss_pred eEEEEechhhHHHHHHHHHhhcCCchhhhhcCCcccccchHHHHHhhcc--cceEEecchhhccCCCCCceEEEEeCCCC
Confidence 9999999999999999999999999999999999999999999999753 34566779999999999999999999999
Q ss_pred CCChhHHHhHhhhccCCc
Q 001840 934 NPTTEDQAVDRAHRIGQT 951 (1007)
Q Consensus 934 Np~~e~QaigRi~RiGQ~ 951 (1007)
+|..|+.|+||..|-|-+
T Consensus 410 d~~~YIHRvGRTaR~gk~ 427 (543)
T KOG0342|consen 410 DPEQYIHRVGRTAREGKE 427 (543)
T ss_pred CHHHHHHHhccccccCCC
Confidence 999999999999997755
No 88
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=99.33 E-value=1.8e-10 Score=139.94 Aligned_cols=117 Identities=16% Similarity=0.144 Sum_probs=96.6
Q ss_pred eEEEEecchhHHHHHHHHHhhcC-CeEEEecCCCChHHHHHHHHhhccCcccceeeeeccCcccccccccCCEEEEecCC
Q 001840 854 KSIVFSQWTRMLDLVENSLNQHC-IQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDLW 932 (1007)
Q Consensus 854 KvIIFsq~~~~ld~L~~~L~~~g-i~~~~i~Gs~s~~~R~~~I~~F~~~~~~~VlLlStkagg~GLNL~~A~~VI~~Dp~ 932 (1007)
.+|||++-..+.+.+...|.+.+ ..+..=+||.+.++|..+-++|+++ +.+++++ |.+...||+.-..+.||+|..|
T Consensus 255 ttLIF~NTR~~aE~l~~~L~~~~~~~i~~HHgSlSre~R~~vE~~lk~G-~lravV~-TSSLELGIDiG~vdlVIq~~SP 332 (814)
T COG1201 255 TTLIFTNTRSGAERLAFRLKKLGPDIIEVHHGSLSRELRLEVEERLKEG-ELKAVVA-TSSLELGIDIGDIDLVIQLGSP 332 (814)
T ss_pred cEEEEEeChHHHHHHHHHHHHhcCCceeeecccccHHHHHHHHHHHhcC-CceEEEE-ccchhhccccCCceEEEEeCCc
Confidence 78999999999999999999997 7888889999999999999999987 5888774 5899999999999999999999
Q ss_pred CCCChhHHHhHhhh-ccCCcccEEEEEEEeCCCHHHHHHHHHHHH
Q 001840 933 WNPTTEDQAVDRAH-RIGQTRPVTVTRLTIRDTVEDRILKLQDDK 976 (1007)
Q Consensus 933 WNp~~e~QaigRi~-RiGQ~k~V~VyrLi~~~TIEe~I~~lq~~K 976 (1007)
-.-+...||+||++ |+|.. --..+++.+ .++.+.-+...+
T Consensus 333 ~sV~r~lQRiGRsgHr~~~~---Skg~ii~~~-r~dllE~~vi~~ 373 (814)
T COG1201 333 KSVNRFLQRIGRAGHRLGEV---SKGIIIAED-RDDLLECLVLAD 373 (814)
T ss_pred HHHHHHhHhccccccccCCc---ccEEEEecC-HHHHHHHHHHHH
Confidence 99999999999985 45543 334445555 555554443333
No 89
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.32 E-value=1.4e-10 Score=144.22 Aligned_cols=105 Identities=26% Similarity=0.298 Sum_probs=89.4
Q ss_pred eEEEEecchhHHHHHHHHHhh---cCCeEEEecCCCChHHHHHHHHhhccCcccceeeeeccCcccccccccCCEEEEec
Q 001840 854 KSIVFSQWTRMLDLVENSLNQ---HCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLD 930 (1007)
Q Consensus 854 KvIIFsq~~~~ld~L~~~L~~---~gi~~~~i~Gs~s~~~R~~~I~~F~~~~~~~VlLlStkagg~GLNL~~A~~VI~~D 930 (1007)
++|||..-...++.+...|.+ .++.++.++|+++.++|.++++.|.++ ..+| |++|..+..||++...++||.++
T Consensus 211 ~iLVFlpg~~eI~~l~~~L~~~~~~~~~v~pLHg~L~~~eq~~~~~~~~~G-~rkV-lVATnIAErgItIp~V~~VID~G 288 (819)
T TIGR01970 211 SILVFLPGQAEIRRVQEQLAERLDSDVLICPLYGELSLAAQDRAIKPDPQG-RRKV-VLATNIAETSLTIEGIRVVIDSG 288 (819)
T ss_pred cEEEEECCHHHHHHHHHHHHhhcCCCcEEEEecCCCCHHHHHHHHhhcccC-CeEE-EEecchHhhcccccCceEEEEcC
Confidence 899999999999999999987 478999999999999999999999865 4455 55889999999999999999998
Q ss_pred CC----CCCCh--------------hHHHhHhhhccCCcccEEEEEEEeCC
Q 001840 931 LW----WNPTT--------------EDQAVDRAHRIGQTRPVTVTRLTIRD 963 (1007)
Q Consensus 931 p~----WNp~~--------------e~QaigRi~RiGQ~k~V~VyrLi~~~ 963 (1007)
.+ +||.. ..||.||++|. ++=..|+|+.+.
T Consensus 289 l~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRAGR~---~~G~cyrL~t~~ 336 (819)
T TIGR01970 289 LARVARFDPKTGITRLETVRISQASATQRAGRAGRL---EPGVCYRLWSEE 336 (819)
T ss_pred cccccccccccCCceeeEEEECHHHHHhhhhhcCCC---CCCEEEEeCCHH
Confidence 76 56654 67999988887 566778888765
No 90
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.32 E-value=6.2e-11 Score=128.65 Aligned_cols=108 Identities=25% Similarity=0.348 Sum_probs=95.6
Q ss_pred CeEEEEecchhHHHHHHHHHhhcCCeEEEecCCCChHHHHHHHHhhccCcccceeeeeccCcccccccccCCEEEEecCC
Q 001840 853 IKSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDLW 932 (1007)
Q Consensus 853 ~KvIIFsq~~~~ld~L~~~L~~~gi~~~~i~Gs~s~~~R~~~I~~F~~~~~~~VlLlStkagg~GLNL~~A~~VI~~Dp~ 932 (1007)
+|+|||+....++|-|..-|.-.||....++|.-.+.+|+.+++.|+.+ .++||+ .|+.++.||++....||++||.|
T Consensus 466 dKvIiFv~~K~~AD~LSSd~~l~gi~~q~lHG~r~Q~DrE~al~~~ksG-~vrILv-aTDlaSRGlDv~DiTHV~NyDFP 543 (629)
T KOG0336|consen 466 DKVIIFVSRKVMADHLSSDFCLKGISSQSLHGNREQSDREMALEDFKSG-EVRILV-ATDLASRGLDVPDITHVYNYDFP 543 (629)
T ss_pred ceEEEEEechhhhhhccchhhhcccchhhccCChhhhhHHHHHHhhhcC-ceEEEE-EechhhcCCCchhcceeeccCCC
Confidence 4999999999999999999999999999999999999999999999976 777776 56999999999999999999999
Q ss_pred CCCChhHHHhHhhhccCCcccEEEEEEEeCC
Q 001840 933 WNPTTEDQAVDRAHRIGQTRPVTVTRLTIRD 963 (1007)
Q Consensus 933 WNp~~e~QaigRi~RiGQ~k~V~VyrLi~~~ 963 (1007)
-|-..+..|+||.+|-|.+- +-|..|.-.|
T Consensus 544 ~nIeeYVHRvGrtGRaGr~G-~sis~lt~~D 573 (629)
T KOG0336|consen 544 RNIEEYVHRVGRTGRAGRTG-TSISFLTRND 573 (629)
T ss_pred ccHHHHHHHhcccccCCCCc-ceEEEEehhh
Confidence 99999999999999999764 3344444444
No 91
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.31 E-value=1.2e-10 Score=141.40 Aligned_cols=117 Identities=12% Similarity=0.106 Sum_probs=98.9
Q ss_pred chhhHHHHHHHHHhhhhcccccchhhhhhcccCCCCCccccCCCCCCCCeEEEEecchhHHHHHHHHHhhcCCeEEEecC
Q 001840 805 ISSKIRTVLDILHTQCELNTKCSIVEIHDLAGSNGSSAVHSKSPIEGPIKSIVFSQWTRMLDLVENSLNQHCIQYRRLDG 884 (1007)
Q Consensus 805 ~SsKl~~l~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvIIFsq~~~~ld~L~~~L~~~gi~~~~i~G 884 (1007)
...|..++++.+......+. .+||||......+.|...|.+.|+++..++|
T Consensus 422 ~~~K~~al~~~i~~~~~~g~-----------------------------pvLI~t~si~~se~ls~~L~~~gi~~~~Lna 472 (796)
T PRK12906 422 LDSKFNAVVKEIKERHAKGQ-----------------------------PVLVGTVAIESSERLSHLLDEAGIPHAVLNA 472 (796)
T ss_pred HHHHHHHHHHHHHHHHhCCC-----------------------------CEEEEeCcHHHHHHHHHHHHHCCCCeeEecC
Confidence 35699999999987666655 9999999999999999999999999999999
Q ss_pred CCChHHHHHHHHhhccCcccceeeeeccCcccccccc---cCC-----EEEEecCCCCCChhHHHhHhhhccCCcccE
Q 001840 885 TMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMV---AAS-----HVILLDLWWNPTTEDQAVDRAHRIGQTRPV 954 (1007)
Q Consensus 885 s~s~~~R~~~I~~F~~~~~~~VlLlStkagg~GLNL~---~A~-----~VI~~Dp~WNp~~e~QaigRi~RiGQ~k~V 954 (1007)
.+...+++.+.+.|+.+ . ++++|..+|.|+++. ... |||.+++|-|...+.|++||++|.|..=..
T Consensus 473 ~~~~~Ea~ii~~ag~~g---~-VtIATnmAGRGtDI~l~~~V~~~GGLhVI~te~pes~ri~~Ql~GRtGRqG~~G~s 546 (796)
T PRK12906 473 KNHAKEAEIIMNAGQRG---A-VTIATNMAGRGTDIKLGPGVKELGGLAVIGTERHESRRIDNQLRGRSGRQGDPGSS 546 (796)
T ss_pred CcHHHHHHHHHhcCCCc---e-EEEEeccccCCCCCCCCcchhhhCCcEEEeeecCCcHHHHHHHhhhhccCCCCcce
Confidence 98766665555556544 2 456779999999985 566 999999999999999999999999987544
No 92
>COG1204 Superfamily II helicase [General function prediction only]
Probab=99.30 E-value=1.1e-10 Score=143.52 Aligned_cols=104 Identities=21% Similarity=0.218 Sum_probs=78.7
Q ss_pred cCchHHHHHHHHHHHhhhcCCCccCceeecCCCCchHHHHHHHHHhhccccccchhhhccccccccccCCCCCCCCCcCc
Q 001840 274 NLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLDDDDDNGNAGL 353 (1007)
Q Consensus 274 ~LrpyQ~~~v~wml~~e~~~~~~~GGILADdmGLGKTiqaIali~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (1007)
.|+|.|..+|.-.+.. . ...|+|-.+|.|||+.|+..|+..-..
T Consensus 31 el~~~qq~av~~~~~~-~-----~N~li~aPTgsGKTlIA~lai~~~l~~------------------------------ 74 (766)
T COG1204 31 ELFNPQQEAVEKGLLS-D-----ENVLISAPTGSGKTLIALLAILSTLLE------------------------------ 74 (766)
T ss_pred HhhHHHHHHhhccccC-C-----CcEEEEcCCCCchHHHHHHHHHHHHHh------------------------------
Confidence 7999999998765533 1 236999999999999888777553211
Q ss_pred ccccccCCCCCCCCCCcccccccccCCCCCCCceEEEcC-hhhHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCccccCC
Q 001840 354 DKVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCP-ASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVELAK 432 (1007)
Q Consensus 354 ~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tLIV~P-~sLl~QW~~Ei~k~~~~~~~l~vlv~~g~~r~~~~~~l~~ 432 (1007)
..++.+-||| .+|..+=.+|+.+|-.- .++|.+++|...... ..+.+
T Consensus 75 -----------------------------~~~k~vYivPlkALa~Ek~~~~~~~~~~--GirV~~~TgD~~~~~-~~l~~ 122 (766)
T COG1204 75 -----------------------------GGGKVVYIVPLKALAEEKYEEFSRLEEL--GIRVGISTGDYDLDD-ERLAR 122 (766)
T ss_pred -----------------------------cCCcEEEEeChHHHHHHHHHHhhhHHhc--CCEEEEecCCcccch-hhhcc
Confidence 1346899999 56888888888843222 699999999886543 67899
Q ss_pred CcEEEechhhhhc
Q 001840 433 YDVVLTTYSIVTN 445 (1007)
Q Consensus 433 ~dVVItSy~~l~~ 445 (1007)
+||+||||+.+-+
T Consensus 123 ~~ViVtT~EK~Ds 135 (766)
T COG1204 123 YDVIVTTPEKLDS 135 (766)
T ss_pred CCEEEEchHHhhH
Confidence 9999999988754
No 93
>PRK14701 reverse gyrase; Provisional
Probab=99.28 E-value=2.7e-10 Score=149.49 Aligned_cols=92 Identities=12% Similarity=0.170 Sum_probs=77.5
Q ss_pred eEEEEecchhH---HHHHHHHHhhcCCeEEEecCCCChHHHHHHHHhhccCcccceeeeec---cCccccccccc-CCEE
Q 001840 854 KSIVFSQWTRM---LDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSL---KAGNLGLNMVA-ASHV 926 (1007)
Q Consensus 854 KvIIFsq~~~~---ld~L~~~L~~~gi~~~~i~Gs~s~~~R~~~I~~F~~~~~~~VlLlSt---kagg~GLNL~~-A~~V 926 (1007)
..|||++.... ++.|...|...|+++..++|. |.+.+++|.++ ++.||+.+. ..++.||++.. ..+|
T Consensus 332 ~gIVF~~t~~~~e~ae~la~~L~~~Gi~a~~~h~~-----R~~~l~~F~~G-~~~VLVaT~s~~gvaaRGIDiP~~Vryv 405 (1638)
T PRK14701 332 GGLIFVPIDEGAEKAEEIEKYLLEDGFKIELVSAK-----NKKGFDLFEEG-EIDYLIGVATYYGTLVRGLDLPERIRFA 405 (1638)
T ss_pred CeEEEEeccccchHHHHHHHHHHHCCCeEEEecch-----HHHHHHHHHcC-CCCEEEEecCCCCeeEecCccCCccCEE
Confidence 78999987654 589999999999999999984 88999999976 788888774 57889999998 9999
Q ss_pred EEecCCC---CCChhHHH-------------hHhhhccCCc
Q 001840 927 ILLDLWW---NPTTEDQA-------------VDRAHRIGQT 951 (1007)
Q Consensus 927 I~~Dp~W---Np~~e~Qa-------------igRi~RiGQ~ 951 (1007)
||||.|= +...+.|. +||+.|-|..
T Consensus 406 i~~~~Pk~~~~~e~~~~~~~~~~~~~~~~~~~~~a~~~g~~ 446 (1638)
T PRK14701 406 VFYGVPKFRFRVDLEDPTIYRILGLLSEILKIEEELKEGIP 446 (1638)
T ss_pred EEeCCCCCCcchhhcccchhhhhcchHHHHHhhhhcccCCc
Confidence 9999996 55555554 4999998865
No 94
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.28 E-value=2.3e-11 Score=128.33 Aligned_cols=96 Identities=21% Similarity=0.312 Sum_probs=91.6
Q ss_pred eEEEEecchhHHHHHHHHHhhcCCeEEEecCCCChHHHHHHHHhhccCcccceeeeeccCcccccccccCCEEEEecCCC
Q 001840 854 KSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDLWW 933 (1007)
Q Consensus 854 KvIIFsq~~~~ld~L~~~L~~~gi~~~~i~Gs~s~~~R~~~I~~F~~~~~~~VlLlStkagg~GLNL~~A~~VI~~Dp~W 933 (1007)
..||||+.+...++|+..+.+.|+....++..|.++.|.++..+|.++ .++.|++| +..-.|++.|+.|.||++|.+-
T Consensus 324 QsIIFCNS~~rVELLAkKITelGyscyyiHakM~Q~hRNrVFHdFr~G-~crnLVct-DL~TRGIDiqavNvVINFDfpk 401 (459)
T KOG0326|consen 324 QSIIFCNSTNRVELLAKKITELGYSCYYIHAKMAQEHRNRVFHDFRNG-KCRNLVCT-DLFTRGIDIQAVNVVINFDFPK 401 (459)
T ss_pred ceEEEeccchHhHHHHHHHHhccchhhHHHHHHHHhhhhhhhhhhhcc-ccceeeeh-hhhhcccccceeeEEEecCCCC
Confidence 779999999999999999999999999999999999999999999976 88888876 9999999999999999999999
Q ss_pred CCChhHHHhHhhhccCCc
Q 001840 934 NPTTEDQAVDRAHRIGQT 951 (1007)
Q Consensus 934 Np~~e~QaigRi~RiGQ~ 951 (1007)
|+..+..||||.+|+|-.
T Consensus 402 ~aEtYLHRIGRsGRFGhl 419 (459)
T KOG0326|consen 402 NAETYLHRIGRSGRFGHL 419 (459)
T ss_pred CHHHHHHHccCCccCCCc
Confidence 999999999999999964
No 95
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.28 E-value=3.9e-10 Score=137.49 Aligned_cols=130 Identities=12% Similarity=0.145 Sum_probs=110.1
Q ss_pred chhhHHHHHHHHHhhhhcccccchhhhhhcccCCCCCccccCCCCCCCCeEEEEecchhHHHHHHHHHhhcCCeEEEecC
Q 001840 805 ISSKIRTVLDILHTQCELNTKCSIVEIHDLAGSNGSSAVHSKSPIEGPIKSIVFSQWTRMLDLVENSLNQHCIQYRRLDG 884 (1007)
Q Consensus 805 ~SsKl~~l~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvIIFsq~~~~ld~L~~~L~~~gi~~~~i~G 884 (1007)
...|+.++++.+.+....+. -+||||......+.|...|.+.||++..++|
T Consensus 426 ~~~k~~av~~~i~~~~~~g~-----------------------------PVLVgt~Sie~sE~ls~~L~~~gi~h~vLna 476 (896)
T PRK13104 426 QADKFQAIIEDVRECGVRKQ-----------------------------PVLVGTVSIEASEFLSQLLKKENIKHQVLNA 476 (896)
T ss_pred HHHHHHHHHHHHHHHHhCCC-----------------------------CEEEEeCcHHHHHHHHHHHHHcCCCeEeecC
Confidence 46799999999988877776 8999999999999999999999999999999
Q ss_pred CCChHHHHHHHHhhccCcccceeeeeccCccccccccc--------------------------------------CCEE
Q 001840 885 TMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVA--------------------------------------ASHV 926 (1007)
Q Consensus 885 s~s~~~R~~~I~~F~~~~~~~VlLlStkagg~GLNL~~--------------------------------------A~~V 926 (1007)
.+...+|+.+.+.|+.+ . ++++|..+|.|+++.- .=||
T Consensus 477 k~~q~Ea~iia~Ag~~G---~-VtIATNmAGRGtDI~Lggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~V 552 (896)
T PRK13104 477 KFHEKEAQIIAEAGRPG---A-VTIATNMAGRGTDIVLGGSLAADLANLPADASEQEKEAVKKEWQKRHDEVIAAGGLRI 552 (896)
T ss_pred CCChHHHHHHHhCCCCC---c-EEEeccCccCCcceecCCchhhhhhccccchhhHHHHHHHHHhhhhhhHHHHcCCCEE
Confidence 99999999999999976 2 4567799999998653 3489
Q ss_pred EEecCCCCCChhHHHhHhhhccCCcccEEEEEEEeCCCHHHHHHHH
Q 001840 927 ILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVEDRILKL 972 (1007)
Q Consensus 927 I~~Dp~WNp~~e~QaigRi~RiGQ~k~V~VyrLi~~~TIEe~I~~l 972 (1007)
|.-+.+-|--.+.|..||++|.|..=....|- |+|+.++.+
T Consensus 553 IgTerhesrRID~QLrGRaGRQGDPGss~f~l-----SleD~l~~~ 593 (896)
T PRK13104 553 IGSERHESRRIDNQLRGRAGRQGDPGSSRFYL-----SLEDNLMRI 593 (896)
T ss_pred EeeccCchHHHHHHhccccccCCCCCceEEEE-----EcCcHHHHH
Confidence 99999999999999999999999875544332 456665543
No 96
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.27 E-value=2.9e-10 Score=126.65 Aligned_cols=128 Identities=16% Similarity=0.226 Sum_probs=111.2
Q ss_pred chhhHHHHHHHHHhhhhcccccchhhhhhcccCCCCCccccCCCCCCCCeEEEEecchhHHHHHHHHHhhcCCeEEEecC
Q 001840 805 ISSKIRTVLDILHTQCELNTKCSIVEIHDLAGSNGSSAVHSKSPIEGPIKSIVFSQWTRMLDLVENSLNQHCIQYRRLDG 884 (1007)
Q Consensus 805 ~SsKl~~l~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvIIFsq~~~~ld~L~~~L~~~gi~~~~i~G 884 (1007)
...|+.+|+..|-+....+ |+|||..-....+-|...|+..|+.+..++|
T Consensus 451 ~~~Kl~wl~~~L~~f~S~g------------------------------kvlifVTKk~~~e~i~a~Lklk~~~v~llhg 500 (731)
T KOG0339|consen 451 EEKKLNWLLRHLVEFSSEG------------------------------KVLIFVTKKADAEEIAANLKLKGFNVSLLHG 500 (731)
T ss_pred cHHHHHHHHHHhhhhccCC------------------------------cEEEEEeccCCHHHHHHHhccccceeeeecC
Confidence 3568899888887766544 9999999999999999999999999999999
Q ss_pred CCChHHHHHHHHhhccCcccceeeeeccCcccccccccCCEEEEecCCCCCChhHHHhHhhhccCCcccEEEEEEEeCCC
Q 001840 885 TMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDT 964 (1007)
Q Consensus 885 s~s~~~R~~~I~~F~~~~~~~VlLlStkagg~GLNL~~A~~VI~~Dp~WNp~~e~QaigRi~RiGQ~k~V~VyrLi~~~T 964 (1007)
++.+.+|.+++.+|+.. ...|++ .+++...||+.....+||+||..-.-.++.|+|||..|-|-+ =..|.|+++..
T Consensus 501 dkdqa~rn~~ls~fKkk-~~~Vlv-atDvaargldI~~ikTVvnyD~ardIdththrigrtgRag~k--GvayTlvTeKD 576 (731)
T KOG0339|consen 501 DKDQAERNEVLSKFKKK-RKPVLV-ATDVAARGLDIPSIKTVVNYDFARDIDTHTHRIGRTGRAGEK--GVAYTLVTEKD 576 (731)
T ss_pred chhhHHHHHHHHHHhhc-CCceEE-EeeHhhcCCCccccceeecccccchhHHHHHHhhhccccccc--ceeeEEechhh
Confidence 99999999999999965 456666 459999999999999999999999999999999999999987 45677777664
Q ss_pred HH
Q 001840 965 VE 966 (1007)
Q Consensus 965 IE 966 (1007)
.+
T Consensus 577 a~ 578 (731)
T KOG0339|consen 577 AE 578 (731)
T ss_pred HH
Confidence 44
No 97
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=99.27 E-value=1.1e-09 Score=135.00 Aligned_cols=117 Identities=14% Similarity=0.135 Sum_probs=84.3
Q ss_pred eEEEEecchhHHHHHHHHHhhc--CCeEEEecCCCChHHHHHHHHhhccCcccceeeeeccCcccccccccCCEEEEecC
Q 001840 854 KSIVFSQWTRMLDLVENSLNQH--CIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDL 931 (1007)
Q Consensus 854 KvIIFsq~~~~ld~L~~~L~~~--gi~~~~i~Gs~s~~~R~~~I~~F~~~~~~~VlLlStkagg~GLNL~~A~~VI~~Dp 931 (1007)
+|-...+-...+.-+...|+.. ..++...+|.|+..+-++++..|.++ ...|||++ ...-.||++..||++|+-+-
T Consensus 805 QvfYv~NrV~~Ie~~~~~L~~LVPEarI~vaHGQM~e~eLE~vM~~F~~g-~~dVLv~T-TIIEtGIDIPnANTiIIe~A 882 (1139)
T COG1197 805 QVFYVHNRVESIEKKAERLRELVPEARIAVAHGQMRERELEEVMLDFYNG-EYDVLVCT-TIIETGIDIPNANTIIIERA 882 (1139)
T ss_pred EEEEEecchhhHHHHHHHHHHhCCceEEEEeecCCCHHHHHHHHHHHHcC-CCCEEEEe-eeeecCcCCCCCceEEEecc
Confidence 3444444455555555555554 45678889999999999999999976 77777755 77889999999999998766
Q ss_pred C-CCCChhHHHhHhhhccCCcccEEEEEEEeCC-----CHHHHHHHHHH
Q 001840 932 W-WNPTTEDQAVDRAHRIGQTRPVTVTRLTIRD-----TVEDRILKLQD 974 (1007)
Q Consensus 932 ~-WNp~~e~QaigRi~RiGQ~k~V~VyrLi~~~-----TIEe~I~~lq~ 974 (1007)
. +--+..-|--||++|-.+ .-+-|-++..+ .-+.|+..++.
T Consensus 883 D~fGLsQLyQLRGRVGRS~~--~AYAYfl~p~~k~lT~~A~kRL~aI~~ 929 (1139)
T COG1197 883 DKFGLAQLYQLRGRVGRSNK--QAYAYFLYPPQKALTEDAEKRLEAIAS 929 (1139)
T ss_pred ccccHHHHHHhccccCCccc--eEEEEEeecCccccCHHHHHHHHHHHh
Confidence 5 667888999999988644 35666666543 34455554444
No 98
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=99.26 E-value=3.7e-10 Score=140.66 Aligned_cols=107 Identities=17% Similarity=0.236 Sum_probs=88.7
Q ss_pred eEEEEecchhHHHHHHHHHhh---cCCeEEEecCCCChHHHHHHHHhhccCcccceeeeeccCcccccccccCCEEEEec
Q 001840 854 KSIVFSQWTRMLDLVENSLNQ---HCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLD 930 (1007)
Q Consensus 854 KvIIFsq~~~~ld~L~~~L~~---~gi~~~~i~Gs~s~~~R~~~I~~F~~~~~~~VlLlStkagg~GLNL~~A~~VI~~D 930 (1007)
.+|||..-...++.+.+.|.. .++.+..++|+++.++|.++++.|.++ ..+ +|++|..+..||++...++||.++
T Consensus 214 ~iLVFlpg~~ei~~l~~~L~~~~~~~~~v~~Lhg~l~~~eq~~~~~~~~~G-~rk-VlvATnIAErsLtIp~V~~VID~G 291 (812)
T PRK11664 214 SLLLFLPGVGEIQRVQEQLASRVASDVLLCPLYGALSLAEQQKAILPAPAG-RRK-VVLATNIAETSLTIEGIRLVVDSG 291 (812)
T ss_pred CEEEEcCCHHHHHHHHHHHHHhccCCceEEEeeCCCCHHHHHHHhccccCC-CeE-EEEecchHHhcccccCceEEEECC
Confidence 899999999999999999987 578899999999999999999999754 444 455889999999999999999976
Q ss_pred CC----CCCC--------------hhHHHhHhhhccCCcccEEEEEEEeCCCH
Q 001840 931 LW----WNPT--------------TEDQAVDRAHRIGQTRPVTVTRLTIRDTV 965 (1007)
Q Consensus 931 p~----WNp~--------------~e~QaigRi~RiGQ~k~V~VyrLi~~~TI 965 (1007)
.+ |+|. ...||.||++|. .+=+.|+|+.+...
T Consensus 292 l~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRaGR~---~~G~cyrL~t~~~~ 341 (812)
T PRK11664 292 LERVARFDPKTGLTRLVTQRISQASMTQRAGRAGRL---EPGICLHLYSKEQA 341 (812)
T ss_pred CcccccccccCCcceeEEEeechhhhhhhccccCCC---CCcEEEEecCHHHH
Confidence 55 4433 467888888776 47888999876543
No 99
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.24 E-value=1.4e-10 Score=129.24 Aligned_cols=105 Identities=22% Similarity=0.303 Sum_probs=93.7
Q ss_pred eEEEEecchhHHHHHHHHHhhcCCeEEEecCCCChHHHHHHHHhhccCcccceeeeeccCcccccccccCCEEEEecCCC
Q 001840 854 KSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDLWW 933 (1007)
Q Consensus 854 KvIIFsq~~~~ld~L~~~L~~~gi~~~~i~Gs~s~~~R~~~I~~F~~~~~~~VlLlStkagg~GLNL~~A~~VI~~Dp~W 933 (1007)
++|||.+....+..+.-.|--.|+.+..++|+.++.+|-+.++.|++. .+.||| +|++++.||++...-.||+|+.|-
T Consensus 428 ~~ivFv~tKk~AHRl~IllGLlgl~agElHGsLtQ~QRlesL~kFk~~-eidvLi-aTDvAsRGLDI~gV~tVINy~mP~ 505 (691)
T KOG0338|consen 428 RTIVFVRTKKQAHRLRILLGLLGLKAGELHGSLTQEQRLESLEKFKKE-EIDVLI-ATDVASRGLDIEGVQTVINYAMPK 505 (691)
T ss_pred ceEEEEehHHHHHHHHHHHHHhhchhhhhcccccHHHHHHHHHHHHhc-cCCEEE-EechhhccCCccceeEEEeccCch
Confidence 899999999999999999999999999999999999999999999965 777776 669999999999999999999999
Q ss_pred CCChhHHHhHhhhccCCc-ccEEEEEEEeCC
Q 001840 934 NPTTEDQAVDRAHRIGQT-RPVTVTRLTIRD 963 (1007)
Q Consensus 934 Np~~e~QaigRi~RiGQ~-k~V~VyrLi~~~ 963 (1007)
.-..|..|+||.-|-|.. +-|. |+.++
T Consensus 506 t~e~Y~HRVGRTARAGRaGrsVt---lvgE~ 533 (691)
T KOG0338|consen 506 TIEHYLHRVGRTARAGRAGRSVT---LVGES 533 (691)
T ss_pred hHHHHHHHhhhhhhcccCcceEE---Eeccc
Confidence 999999999999998865 4454 44444
No 100
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.22 E-value=1e-09 Score=121.91 Aligned_cols=118 Identities=19% Similarity=0.264 Sum_probs=100.8
Q ss_pred hhhHHHHHHHHHhhhhcccccchhhhhhcccCCCCCccccCCCCCCCCeEEEEecchhHHHHHHHHHhhc--CCeEEEec
Q 001840 806 SSKIRTVLDILHTQCELNTKCSIVEIHDLAGSNGSSAVHSKSPIEGPIKSIVFSQWTRMLDLVENSLNQH--CIQYRRLD 883 (1007)
Q Consensus 806 SsKl~~l~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvIIFsq~~~~ld~L~~~L~~~--gi~~~~i~ 883 (1007)
..|+..|+++|.+... .|+|||-......+|....|... ++..+.++
T Consensus 240 ~eK~~~lv~~L~~~~~-------------------------------kK~iVFF~TCasVeYf~~~~~~~l~~~~i~~iH 288 (567)
T KOG0345|consen 240 DEKLSQLVHLLNNNKD-------------------------------KKCIVFFPTCASVEYFGKLFSRLLKKREIFSIH 288 (567)
T ss_pred HHHHHHHHHHHhcccc-------------------------------ccEEEEecCcchHHHHHHHHHHHhCCCcEEEec
Confidence 5688889998877332 29999998888899988888776 68899999
Q ss_pred CCCChHHHHHHHHhhccCcccceeeeeccCcccccccccCCEEEEecCCCCCChhHHHhHhhhccCCcccEEE
Q 001840 884 GTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTV 956 (1007)
Q Consensus 884 Gs~s~~~R~~~I~~F~~~~~~~VlLlStkagg~GLNL~~A~~VI~~Dp~WNp~~e~QaigRi~RiGQ~k~V~V 956 (1007)
|.|+..+|.++++.|.+. .-.| |++|++++.||+....+.||.||||-+|.....|.||..|.|..-.-.|
T Consensus 289 GK~~q~~R~k~~~~F~~~-~~~v-l~~TDVaARGlDip~iD~VvQ~DpP~~~~~FvHR~GRTaR~gr~G~Aiv 359 (567)
T KOG0345|consen 289 GKMSQKARAKVLEAFRKL-SNGV-LFCTDVAARGLDIPGIDLVVQFDPPKDPSSFVHRCGRTARAGREGNAIV 359 (567)
T ss_pred chhcchhHHHHHHHHHhc-cCce-EEeehhhhccCCCCCceEEEecCCCCChhHHHhhcchhhhccCccceEE
Confidence 999999999999999973 2234 5577999999999999999999999999999999999999998755444
No 101
>PRK09694 helicase Cas3; Provisional
Probab=99.20 E-value=1.8e-09 Score=134.45 Aligned_cols=95 Identities=13% Similarity=0.142 Sum_probs=78.5
Q ss_pred eEEEEecchhHHHHHHHHHhhcC---CeEEEecCCCChHHH----HHHHHhhccCccc--ceeeeeccCcccccccccCC
Q 001840 854 KSIVFSQWTRMLDLVENSLNQHC---IQYRRLDGTMSLPAR----DRAVKDFNTDREI--TVMLMSLKAGNLGLNMVAAS 924 (1007)
Q Consensus 854 KvIIFsq~~~~ld~L~~~L~~~g---i~~~~i~Gs~s~~~R----~~~I~~F~~~~~~--~VlLlStkagg~GLNL~~A~ 924 (1007)
++|||++....+..+.+.|++.+ +.+..++|.++..+| +++++.|..+... ..+|++|++...||++ .++
T Consensus 562 ~vLVf~NTV~~Aq~ly~~L~~~~~~~~~v~llHsrf~~~dR~~~E~~vl~~fgk~g~r~~~~ILVaTQViE~GLDI-d~D 640 (878)
T PRK09694 562 QVCLICNLVDDAQKLYQRLKELNNTQVDIDLFHARFTLNDRREKEQRVIENFGKNGKRNQGRILVATQVVEQSLDL-DFD 640 (878)
T ss_pred EEEEEECCHHHHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHHHHHHhcCCcCCCeEEEECcchhheeec-CCC
Confidence 89999999999999999999765 678999999999999 4678889433222 3567789999999999 578
Q ss_pred EEEEecCCCCCChhHHHhHhhhccCCc
Q 001840 925 HVILLDLWWNPTTEDQAVDRAHRIGQT 951 (1007)
Q Consensus 925 ~VI~~Dp~WNp~~e~QaigRi~RiGQ~ 951 (1007)
.||....| ...+.||+||++|.|..
T Consensus 641 vlItdlaP--idsLiQRaGR~~R~~~~ 665 (878)
T PRK09694 641 WLITQLCP--VDLLFQRLGRLHRHHRK 665 (878)
T ss_pred eEEECCCC--HHHHHHHHhccCCCCCC
Confidence 88876555 46889999999999874
No 102
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.19 E-value=2.6e-09 Score=114.95 Aligned_cols=97 Identities=20% Similarity=0.300 Sum_probs=90.7
Q ss_pred eEEEEecchhHHHHHHHHHhhcCCeEEEecCCCChHHHHHHHHhhccCcccceeeeeccCcccccccccCCEEEEecCCC
Q 001840 854 KSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDLWW 933 (1007)
Q Consensus 854 KvIIFsq~~~~ld~L~~~L~~~gi~~~~i~Gs~s~~~R~~~I~~F~~~~~~~VlLlStkagg~GLNL~~A~~VI~~Dp~W 933 (1007)
.++||.|-+.+..+|...|+..++++..+++-|++++|-.++.+|+.+ .+++|+ .|++++.||+.....-||++|.|-
T Consensus 256 simIFvnttr~cQ~l~~~l~~le~r~~~lHs~m~Q~eR~~aLsrFrs~-~~~ili-aTDVAsRGLDIP~V~LVvN~diPr 333 (442)
T KOG0340|consen 256 SIMIFVNTTRECQLLSMTLKNLEVRVVSLHSQMPQKERLAALSRFRSN-AARILI-ATDVASRGLDIPTVELVVNHDIPR 333 (442)
T ss_pred eEEEEeehhHHHHHHHHHHhhhceeeeehhhcchHHHHHHHHHHHhhc-CccEEE-EechhhcCCCCCceeEEEecCCCC
Confidence 789999999999999999999999999999999999999999999976 667766 559999999999999999999999
Q ss_pred CCChhHHHhHhhhccCCcc
Q 001840 934 NPTTEDQAVDRAHRIGQTR 952 (1007)
Q Consensus 934 Np~~e~QaigRi~RiGQ~k 952 (1007)
.|..+..|.||.-|-|..-
T Consensus 334 ~P~~yiHRvGRtARAGR~G 352 (442)
T KOG0340|consen 334 DPKDYIHRVGRTARAGRKG 352 (442)
T ss_pred CHHHHHHhhcchhcccCCc
Confidence 9999999999998888663
No 103
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=99.19 E-value=9.9e-10 Score=124.23 Aligned_cols=106 Identities=20% Similarity=0.230 Sum_probs=90.9
Q ss_pred eEEEEecchhHHHHHHHHHhhcCCeEEEecCCCChHHHHHHHHhhccCcccceeeeeccCcccccccccCCEEEE-----
Q 001840 854 KSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVIL----- 928 (1007)
Q Consensus 854 KvIIFsq~~~~ld~L~~~L~~~gi~~~~i~Gs~s~~~R~~~I~~F~~~~~~~VlLlStkagg~GLNL~~A~~VI~----- 928 (1007)
..|||+....-...|+.+|...|++..-++++++..+|..+-..|.+. ++.+++ +|.|.|.|+++.+ +.|||
T Consensus 442 QtIVFT~SRrr~h~lA~~L~~kG~~a~pYHaGL~y~eRk~vE~~F~~q-~l~~VV-TTAAL~AGVDFPA-SQVIFEsLaM 518 (830)
T COG1202 442 QTIVFTYSRRRCHELADALTGKGLKAAPYHAGLPYKERKSVERAFAAQ-ELAAVV-TTAALAAGVDFPA-SQVIFESLAM 518 (830)
T ss_pred ceEEEecchhhHHHHHHHhhcCCcccccccCCCcHHHHHHHHHHHhcC-CcceEe-ehhhhhcCCCCch-HHHHHHHHHc
Confidence 789999999999999999999999999999999999999999999965 565555 7899999999985 45544
Q ss_pred ecCCCCCChhHHHhHhhhccCCcccEEEEEEEeC
Q 001840 929 LDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIR 962 (1007)
Q Consensus 929 ~Dp~WNp~~e~QaigRi~RiGQ~k~V~VyrLi~~ 962 (1007)
=--|.+|...+|-.||++|.|-...=.||-|+-.
T Consensus 519 G~~WLs~~EF~QM~GRAGRp~yHdrGkVyllvep 552 (830)
T COG1202 519 GIEWLSVREFQQMLGRAGRPDYHDRGKVYLLVEP 552 (830)
T ss_pred ccccCCHHHHHHHhcccCCCCcccCceEEEEecC
Confidence 2346799999999999999998777777777744
No 104
>COG4889 Predicted helicase [General function prediction only]
Probab=99.17 E-value=4.9e-10 Score=131.16 Aligned_cols=77 Identities=26% Similarity=0.256 Sum_probs=60.7
Q ss_pred CCeEEEecCCCChHHHHHHHHhhcc-C-cccceeeeeccCcccccccccCCEEEEecCCCCCChhHHHhHhhhccCCccc
Q 001840 876 CIQYRRLDGTMSLPARDRAVKDFNT-D-REITVMLMSLKAGNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRP 953 (1007)
Q Consensus 876 gi~~~~i~Gs~s~~~R~~~I~~F~~-~-~~~~VlLlStkagg~GLNL~~A~~VI~~Dp~WNp~~e~QaigRi~RiGQ~k~ 953 (1007)
.+...-+||.|...+|.+....=+. . .+++| |-..+|+++|++..+-+.|||+||--.-....|++||+-|---.|.
T Consensus 499 ~iSi~HvDGtmNal~R~~l~~l~~~~~~neckI-lSNaRcLSEGVDVPaLDsViFf~pr~smVDIVQaVGRVMRKa~gK~ 577 (1518)
T COG4889 499 KISIDHVDGTMNALERLDLLELKNTFEPNECKI-LSNARCLSEGVDVPALDSVIFFDPRSSMVDIVQAVGRVMRKAKGKK 577 (1518)
T ss_pred eEEeecccccccHHHHHHHHhccCCCCcchhee-eccchhhhcCCCccccceEEEecCchhHHHHHHHHHHHHHhCcCCc
Confidence 4556678999999999665554332 2 24444 5577999999999999999999999888889999999999765443
No 105
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.17 E-value=2.9e-09 Score=129.87 Aligned_cols=129 Identities=15% Similarity=0.155 Sum_probs=105.7
Q ss_pred chhhHHHHHHHHHhhhhcccccchhhhhhcccCCCCCccccCCCCCCCCeEEEEecchhHHHHHHHHHhhcCCeEEEecC
Q 001840 805 ISSKIRTVLDILHTQCELNTKCSIVEIHDLAGSNGSSAVHSKSPIEGPIKSIVFSQWTRMLDLVENSLNQHCIQYRRLDG 884 (1007)
Q Consensus 805 ~SsKl~~l~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvIIFsq~~~~ld~L~~~L~~~gi~~~~i~G 884 (1007)
...|+.++++.+.+....+. .+||||......+.|...|.+.|+++..++|
T Consensus 412 ~~~K~~aI~~~I~~~~~~gr-----------------------------pVLIft~Si~~se~Ls~~L~~~gi~~~vLna 462 (830)
T PRK12904 412 EKEKFDAVVEDIKERHKKGQ-----------------------------PVLVGTVSIEKSELLSKLLKKAGIPHNVLNA 462 (830)
T ss_pred HHHHHHHHHHHHHHHHhcCC-----------------------------CEEEEeCcHHHHHHHHHHHHHCCCceEeccC
Confidence 35799999999987666665 8999999999999999999999999999999
Q ss_pred CCChHHHHHHHHhhccCcccceeeeeccCccccccccc--------------------------------------CCEE
Q 001840 885 TMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVA--------------------------------------ASHV 926 (1007)
Q Consensus 885 s~s~~~R~~~I~~F~~~~~~~VlLlStkagg~GLNL~~--------------------------------------A~~V 926 (1007)
. ..+|++.|..|... ...|+| +|..+|.|+++.- .=||
T Consensus 463 k--q~eREa~Iia~Ag~-~g~VtI-ATNmAGRGtDI~LgGn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~GGLhV 538 (830)
T PRK12904 463 K--NHEREAEIIAQAGR-PGAVTI-ATNMAGRGTDIKLGGNPEMLAAALLEEETEEQIAKIKAEWQEEHEEVLEAGGLHV 538 (830)
T ss_pred c--hHHHHHHHHHhcCC-CceEEE-ecccccCCcCccCCCchhhhhhhhhhhhhhHHHHHHHHHHhhhhhhHHHcCCCEE
Confidence 6 67999999999864 444555 6799999988554 3489
Q ss_pred EEecCCCCCChhHHHhHhhhccCCcccEEEEEEEeCCCHHHHHHH
Q 001840 927 ILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVEDRILK 971 (1007)
Q Consensus 927 I~~Dp~WNp~~e~QaigRi~RiGQ~k~V~VyrLi~~~TIEe~I~~ 971 (1007)
|.-+.+=|--.+.|..||++|.|..=....|- |+|+.++.
T Consensus 539 igTerhesrRid~QlrGRagRQGdpGss~f~l-----SleD~l~~ 578 (830)
T PRK12904 539 IGTERHESRRIDNQLRGRSGRQGDPGSSRFYL-----SLEDDLMR 578 (830)
T ss_pred EecccCchHHHHHHhhcccccCCCCCceeEEE-----EcCcHHHH
Confidence 99999999999999999999999886544432 34555543
No 106
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.14 E-value=6.6e-09 Score=126.59 Aligned_cols=130 Identities=13% Similarity=0.156 Sum_probs=110.2
Q ss_pred chhhHHHHHHHHHhhhhcccccchhhhhhcccCCCCCccccCCCCCCCCeEEEEecchhHHHHHHHHHhhcCCeEEEecC
Q 001840 805 ISSKIRTVLDILHTQCELNTKCSIVEIHDLAGSNGSSAVHSKSPIEGPIKSIVFSQWTRMLDLVENSLNQHCIQYRRLDG 884 (1007)
Q Consensus 805 ~SsKl~~l~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvIIFsq~~~~ld~L~~~L~~~gi~~~~i~G 884 (1007)
...|..++++.+.+..+.|. .|||||......+.|...|.+.|+++..+++
T Consensus 431 ~~~K~~Aii~ei~~~~~~Gr-----------------------------pVLV~t~sv~~se~ls~~L~~~gi~~~vLna 481 (908)
T PRK13107 431 ADEKYQAIIKDIKDCRERGQ-----------------------------PVLVGTVSIEQSELLARLMVKEKIPHEVLNA 481 (908)
T ss_pred HHHHHHHHHHHHHHHHHcCC-----------------------------CEEEEeCcHHHHHHHHHHHHHCCCCeEeccC
Confidence 46899999999998888877 9999999999999999999999999999999
Q ss_pred CCChHHHHHHHHhhccCcccceeeeeccCccccccccc-------------------------------------CCEEE
Q 001840 885 TMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVA-------------------------------------ASHVI 927 (1007)
Q Consensus 885 s~s~~~R~~~I~~F~~~~~~~VlLlStkagg~GLNL~~-------------------------------------A~~VI 927 (1007)
..+..+|+.+.+.|+.+. ++++|..+|.|+++.- .=|||
T Consensus 482 k~~~~Ea~ii~~Ag~~G~----VtIATnmAGRGTDIkLggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VI 557 (908)
T PRK13107 482 KFHEREAEIVAQAGRTGA----VTIATNMAGRGTDIVLGGNWNMEIEALENPTAEQKAKIKADWQIRHDEVVAAGGLHIL 557 (908)
T ss_pred cccHHHHHHHHhCCCCCc----EEEecCCcCCCcceecCCchHHhhhhhcchhhHHHHHHHHHHHhhHHHHHHcCCCEEE
Confidence 999999999999999763 4667799999998652 34899
Q ss_pred EecCCCCCChhHHHhHhhhccCCcccEEEEEEEeCCCHHHHHHHH
Q 001840 928 LLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVEDRILKL 972 (1007)
Q Consensus 928 ~~Dp~WNp~~e~QaigRi~RiGQ~k~V~VyrLi~~~TIEe~I~~l 972 (1007)
.-+.+-|--.+.|..||++|.|..=.-..|. |+|+.++.+
T Consensus 558 gTerheSrRID~QLrGRaGRQGDPGss~f~l-----SlED~L~r~ 597 (908)
T PRK13107 558 GTERHESRRIDNQLRGRAGRQGDAGSSRFYL-----SMEDSLMRI 597 (908)
T ss_pred ecccCchHHHHhhhhcccccCCCCCceeEEE-----EeCcHHHHH
Confidence 9999999999999999999999874433322 455555543
No 107
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.10 E-value=2.3e-09 Score=122.72 Aligned_cols=119 Identities=17% Similarity=0.218 Sum_probs=103.7
Q ss_pred hhhHHHHHHHHHhhhhcccccchhhhhhcccCCCCCccccCCCCCCCCeEEEEecchhHHHHHHHHH-hhcCCeEEEecC
Q 001840 806 SSKIRTVLDILHTQCELNTKCSIVEIHDLAGSNGSSAVHSKSPIEGPIKSIVFSQWTRMLDLVENSL-NQHCIQYRRLDG 884 (1007)
Q Consensus 806 SsKl~~l~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvIIFsq~~~~ld~L~~~L-~~~gi~~~~i~G 884 (1007)
..|+-++.+++..-.+. -+|||.|...-+..|...| .-.+|.+.+|+|
T Consensus 372 ~~K~lA~rq~v~~g~~P-------------------------------P~lIfVQs~eRak~L~~~L~~~~~i~v~vIh~ 420 (593)
T KOG0344|consen 372 KGKLLALRQLVASGFKP-------------------------------PVLIFVQSKERAKQLFEELEIYDNINVDVIHG 420 (593)
T ss_pred hhHHHHHHHHHhccCCC-------------------------------CeEEEEecHHHHHHHHHHhhhccCcceeeEec
Confidence 56888888888765321 7899999999999999999 666899999999
Q ss_pred CCChHHHHHHHHhhccCcccceeeeeccCcccccccccCCEEEEecCCCCCChhHHHhHhhhccCCc-ccEEEE
Q 001840 885 TMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQT-RPVTVT 957 (1007)
Q Consensus 885 s~s~~~R~~~I~~F~~~~~~~VlLlStkagg~GLNL~~A~~VI~~Dp~WNp~~e~QaigRi~RiGQ~-k~V~Vy 957 (1007)
..++.+|.+.+++|+.+ ++.||++ |...+.|++++.+|.||+||.|=.-..+..+|||.+|-|+. +-++.|
T Consensus 421 e~~~~qrde~~~~FR~g-~IwvLic-Tdll~RGiDf~gvn~VInyD~p~s~~syihrIGRtgRag~~g~Aitfy 492 (593)
T KOG0344|consen 421 ERSQKQRDETMERFRIG-KIWVLIC-TDLLARGIDFKGVNLVINYDFPQSDLSYIHRIGRTGRAGRSGKAITFY 492 (593)
T ss_pred ccchhHHHHHHHHHhcc-CeeEEEe-hhhhhccccccCcceEEecCCCchhHHHHHHhhccCCCCCCcceEEEe
Confidence 99999999999999976 7888775 59999999999999999999999999999999999999987 445544
No 108
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=99.08 E-value=8.5e-10 Score=124.29 Aligned_cols=95 Identities=18% Similarity=0.219 Sum_probs=88.2
Q ss_pred eEEEEecchhHHHHHHHHHhhcCCeEEEecCCCChHHHHHHHHhhccCcccceeeeeccCcccccccccCCEEEEecCCC
Q 001840 854 KSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDLWW 933 (1007)
Q Consensus 854 KvIIFsq~~~~ld~L~~~L~~~gi~~~~i~Gs~s~~~R~~~I~~F~~~~~~~VlLlStkagg~GLNL~~A~~VI~~Dp~W 933 (1007)
+.||||+..+.+..|.-.|...+|+...++.+|.+++|-+.+++|.+.+ ..+|+.|++++.||+.+...|||||..|-
T Consensus 465 rTlVF~NsId~vKRLt~~L~~L~i~p~~LHA~M~QKqRLknLEkF~~~~--~~VLiaTDVAARGLDIp~V~HVIHYqVPr 542 (731)
T KOG0347|consen 465 RTLVFCNSIDCVKRLTVLLNNLDIPPLPLHASMIQKQRLKNLEKFKQSP--SGVLIATDVAARGLDIPGVQHVIHYQVPR 542 (731)
T ss_pred ceEEEechHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHHhHHHHhcCC--CeEEEeehhhhccCCCCCcceEEEeecCC
Confidence 8999999999999999999999999999999999999999999999753 44566779999999999999999999999
Q ss_pred CCChhHHHhHhhhccCC
Q 001840 934 NPTTEDQAVDRAHRIGQ 950 (1007)
Q Consensus 934 Np~~e~QaigRi~RiGQ 950 (1007)
.-..|..|-||.-|-+.
T Consensus 543 tseiYVHRSGRTARA~~ 559 (731)
T KOG0347|consen 543 TSEIYVHRSGRTARANS 559 (731)
T ss_pred ccceeEecccccccccC
Confidence 99999999999999763
No 109
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=99.07 E-value=3.1e-08 Score=120.90 Aligned_cols=132 Identities=19% Similarity=0.241 Sum_probs=108.1
Q ss_pred hhhHHHHHHHHHhhhhcccccchhhhhhcccCCCCCccccCCCCCCCCeEEEEecchhHHHHHHHHHhhcCCeEEEecCC
Q 001840 806 SSKIRTVLDILHTQCELNTKCSIVEIHDLAGSNGSSAVHSKSPIEGPIKSIVFSQWTRMLDLVENSLNQHCIQYRRLDGT 885 (1007)
Q Consensus 806 SsKl~~l~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvIIFsq~~~~ld~L~~~L~~~gi~~~~i~Gs 885 (1007)
..++..+++.|....+.+. ++|||+.....++.|...|...|+++..++|.
T Consensus 425 ~~qi~~Ll~eI~~~~~~g~-----------------------------~vLIf~~tk~~ae~L~~~L~~~gi~~~~lh~~ 475 (655)
T TIGR00631 425 DGQVDDLLSEIRQRVARNE-----------------------------RVLVTTLTKKMAEDLTDYLKELGIKVRYLHSE 475 (655)
T ss_pred cchHHHHHHHHHHHHcCCC-----------------------------EEEEEECCHHHHHHHHHHHhhhccceeeeeCC
Confidence 4577888888888777666 99999999999999999999999999999999
Q ss_pred CChHHHHHHHHhhccCcccceeeeeccCcccccccccCCEEEEec-----CCCCCChhHHHhHhhhccCCcccEEEEEEE
Q 001840 886 MSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLD-----LWWNPTTEDQAVDRAHRIGQTRPVTVTRLT 960 (1007)
Q Consensus 886 ~s~~~R~~~I~~F~~~~~~~VlLlStkagg~GLNL~~A~~VI~~D-----p~WNp~~e~QaigRi~RiGQ~k~V~VyrLi 960 (1007)
++..+|.++++.|..+ .+.|++ ++..+++|+++..++.||++| .+-+...+.|++||+.|.. .=.|+.|+
T Consensus 476 ~~~~eR~~~l~~fr~G-~i~VLV-~t~~L~rGfDiP~v~lVvi~DadifG~p~~~~~~iqriGRagR~~---~G~vi~~~ 550 (655)
T TIGR00631 476 IDTLERVEIIRDLRLG-EFDVLV-GINLLREGLDLPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV---NGKVIMYA 550 (655)
T ss_pred CCHHHHHHHHHHHhcC-CceEEE-EcChhcCCeeeCCCcEEEEeCcccccCCCCHHHHHHHhcCCCCCC---CCEEEEEE
Confidence 9999999999999865 566654 669999999999999999999 4557788999999999973 22344555
Q ss_pred eCCC--HHHHHHH
Q 001840 961 IRDT--VEDRILK 971 (1007)
Q Consensus 961 ~~~T--IEe~I~~ 971 (1007)
...| +...|.+
T Consensus 551 ~~~~~~~~~ai~~ 563 (655)
T TIGR00631 551 DKITDSMQKAIEE 563 (655)
T ss_pred cCCCHHHHHHHHH
Confidence 5443 4444443
No 110
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=99.04 E-value=1.7e-09 Score=113.83 Aligned_cols=159 Identities=19% Similarity=0.155 Sum_probs=103.5
Q ss_pred cCchHHHHHHHHHHHhhhcCCCccCceeecCCCCchHHHHHHHHHhhccccccchhhhccccccccccCCCCCCCCCcCc
Q 001840 274 NLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLDDDDDNGNAGL 353 (1007)
Q Consensus 274 ~LrpyQ~~~v~wml~~e~~~~~~~GGILADdmGLGKTiqaIali~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (1007)
.|++||.+++.-+++ .+..+++-..|.|||+..+..+.......
T Consensus 21 ~~~~~Q~~~~~~~~~-------~~~~li~~~TG~GKT~~~~~~~l~~~~~~----------------------------- 64 (203)
T cd00268 21 KPTPIQARAIPPLLS-------GRDVIGQAQTGSGKTAAFLIPILEKLDPS----------------------------- 64 (203)
T ss_pred CCCHHHHHHHHHHhc-------CCcEEEECCCCCcHHHHHHHHHHHHHHhh-----------------------------
Confidence 489999999988875 24579999999999998544443321110
Q ss_pred ccccccCCCCCCCCCCcccccccccCCCCCCCceEEEcChh-hHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCC-cccc-
Q 001840 354 DKVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPAS-VLRQWARELEDKVPDKAALSVLIYHGGSRTKD-PVEL- 430 (1007)
Q Consensus 354 ~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tLIV~P~s-Ll~QW~~Ei~k~~~~~~~l~vlv~~g~~r~~~-~~~l- 430 (1007)
.......+|||||.. ++.||...+.++.... ...+..++|...... ...+
T Consensus 65 --------------------------~~~~~~~viii~p~~~L~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 117 (203)
T cd00268 65 --------------------------PKKDGPQALILAPTRELALQIAEVARKLGKHT-NLKVVVIYGGTSIDKQIRKLK 117 (203)
T ss_pred --------------------------cccCCceEEEEcCCHHHHHHHHHHHHHHhccC-CceEEEEECCCCHHHHHHHhc
Confidence 001224589999965 8899999998876543 678888888664322 2222
Q ss_pred CCCcEEEechhhhhccCCCCCCCchhhhhhhcCcccCCcchhhhhhhhcccccccccccCCCCCCCCCCcccCCCCcccc
Q 001840 431 AKYDVVLTTYSIVTNEVPKQPSVDEEEADEKNGETYGLSSEFSVNKKRKKISNVSKRGKKGKKGNVNSSIDYGCGPLAKV 510 (1007)
Q Consensus 431 ~~~dVVItSy~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~k~~~~~~k~~~~~~~~~~~~~L~~~ 510 (1007)
...+|+|+|.+.+...+... .+.--
T Consensus 118 ~~~~iiv~T~~~l~~~l~~~-------------------------------------------------------~~~~~ 142 (203)
T cd00268 118 RGPHIVVATPGRLLDLLERG-------------------------------------------------------KLDLS 142 (203)
T ss_pred CCCCEEEEChHHHHHHHHcC-------------------------------------------------------CCChh
Confidence 37899999988765432110 01112
Q ss_pred ceeEEEEccCcccCCcc-c-HHHHHHHhcc-cCcEEEEeccCC
Q 001840 511 GWFRVVLDEAQTIKNHR-T-QVARACCSLR-AKRRWCLSGTPI 550 (1007)
Q Consensus 511 ~w~rVIlDEAH~iKN~~-s-~~~kal~~L~-a~~r~lLTGTPi 550 (1007)
.+.++|+||+|.+.+.. . .....+..+. ....+++||||-
T Consensus 143 ~l~~lIvDE~h~~~~~~~~~~~~~~~~~l~~~~~~~~~SAT~~ 185 (203)
T cd00268 143 KVKYLVLDEADRMLDMGFEDQIREILKLLPKDRQTLLFSATMP 185 (203)
T ss_pred hCCEEEEeChHHhhccChHHHHHHHHHhCCcccEEEEEeccCC
Confidence 35689999999986543 1 1222233343 456899999997
No 111
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=99.00 E-value=1.6e-07 Score=115.55 Aligned_cols=122 Identities=19% Similarity=0.231 Sum_probs=103.2
Q ss_pred hhhHHHHHHHHHhhhhcccccchhhhhhcccCCCCCccccCCCCCCCCeEEEEecchhHHHHHHHHHhhcCCeEEEecCC
Q 001840 806 SSKIRTVLDILHTQCELNTKCSIVEIHDLAGSNGSSAVHSKSPIEGPIKSIVFSQWTRMLDLVENSLNQHCIQYRRLDGT 885 (1007)
Q Consensus 806 SsKl~~l~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvIIFsq~~~~ld~L~~~L~~~gi~~~~i~Gs 885 (1007)
..++..+++.|..+...+. ++||||.....++.|...|...|+++..++|.
T Consensus 429 ~~q~~~L~~~L~~~~~~g~-----------------------------~viIf~~t~~~ae~L~~~L~~~gi~~~~~h~~ 479 (652)
T PRK05298 429 KGQVDDLLSEIRKRVAKGE-----------------------------RVLVTTLTKRMAEDLTDYLKELGIKVRYLHSD 479 (652)
T ss_pred cccHHHHHHHHHHHHhCCC-----------------------------EEEEEeCCHHHHHHHHHHHhhcceeEEEEECC
Confidence 4567888888888777666 99999999999999999999999999999999
Q ss_pred CChHHHHHHHHhhccCcccceeeeeccCcccccccccCCEEEEecC-----CCCCChhHHHhHhhhccCCcccEEEEEEE
Q 001840 886 MSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDL-----WWNPTTEDQAVDRAHRIGQTRPVTVTRLT 960 (1007)
Q Consensus 886 ~s~~~R~~~I~~F~~~~~~~VlLlStkagg~GLNL~~A~~VI~~Dp-----~WNp~~e~QaigRi~RiGQ~k~V~VyrLi 960 (1007)
++..+|.++++.|..+ .+.|+ +++...+.|+++..++.||++|. +-++..+.|++||+.|- . .=.++.|+
T Consensus 480 ~~~~~R~~~l~~f~~g-~i~vl-V~t~~L~rGfdlp~v~lVii~d~eifG~~~~~~~yiqr~GR~gR~-~--~G~~i~~~ 554 (652)
T PRK05298 480 IDTLERVEIIRDLRLG-EFDVL-VGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-V--NGKVILYA 554 (652)
T ss_pred CCHHHHHHHHHHHHcC-CceEE-EEeCHHhCCccccCCcEEEEeCCcccccCCCHHHHHHHhccccCC-C--CCEEEEEe
Confidence 9999999999999865 55555 46799999999999999999996 45788899999999994 2 22344455
Q ss_pred e
Q 001840 961 I 961 (1007)
Q Consensus 961 ~ 961 (1007)
.
T Consensus 555 ~ 555 (652)
T PRK05298 555 D 555 (652)
T ss_pred c
Confidence 4
No 112
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=98.95 E-value=1.4e-08 Score=123.45 Aligned_cols=124 Identities=19% Similarity=0.232 Sum_probs=105.2
Q ss_pred chhhHHHHHHHHHhhhhcccccchhhhhhcccCCCCCccccCCCCCCCCeEEEEecchhHHHHHHHHHhhcCCeEEEecC
Q 001840 805 ISSKIRTVLDILHTQCELNTKCSIVEIHDLAGSNGSSAVHSKSPIEGPIKSIVFSQWTRMLDLVENSLNQHCIQYRRLDG 884 (1007)
Q Consensus 805 ~SsKl~~l~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvIIFsq~~~~ld~L~~~L~~~gi~~~~i~G 884 (1007)
...|+..|+++|.+..+.+ ++|||++.-.-++.|.+.|.+.|+....++|
T Consensus 596 e~eKf~kL~eLl~e~~e~~------------------------------~tiiFv~~qe~~d~l~~~L~~ag~~~~slHG 645 (997)
T KOG0334|consen 596 ENEKFLKLLELLGERYEDG------------------------------KTIIFVDKQEKADALLRDLQKAGYNCDSLHG 645 (997)
T ss_pred chHHHHHHHHHHHHHhhcC------------------------------CEEEEEcCchHHHHHHHHHHhcCcchhhhcC
Confidence 3679999999998877643 9999999999999999999999999999999
Q ss_pred CCChHHHHHHHHhhccCcccceeeeeccCcccccccccCCEEEEecCCCCCChhHHHhHhhhccCCcccEEEEEEEeC
Q 001840 885 TMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIR 962 (1007)
Q Consensus 885 s~s~~~R~~~I~~F~~~~~~~VlLlStkagg~GLNL~~A~~VI~~Dp~WNp~~e~QaigRi~RiGQ~k~V~VyrLi~~ 962 (1007)
..++.+|...|++|+++ . ..||+.|+..+.||+...-..||+||.+-.-..+..|.||..|-|.+- .-|.|+..
T Consensus 646 gv~q~dR~sti~dfK~~-~-~~LLvaTsvvarGLdv~~l~Lvvnyd~pnh~edyvhR~gRTgragrkg--~AvtFi~p 719 (997)
T KOG0334|consen 646 GVDQHDRSSTIEDFKNG-V-VNLLVATSVVARGLDVKELILVVNYDFPNHYEDYVHRVGRTGRAGRKG--AAVTFITP 719 (997)
T ss_pred CCchHHHHhHHHHHhcc-C-ceEEEehhhhhcccccccceEEEEcccchhHHHHHHHhcccccCCccc--eeEEEeCh
Confidence 99999999999999975 3 455667799999999999999999999877777778888888877665 44445554
No 113
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=98.93 E-value=3.9e-08 Score=125.62 Aligned_cols=106 Identities=14% Similarity=0.179 Sum_probs=85.6
Q ss_pred eEEEEecchhHHHHHHHHHhhcC---CeEEEecCCCChHHHHHHHHhhccCcccceeeeeccCcccccccccCCEEEEec
Q 001840 854 KSIVFSQWTRMLDLVENSLNQHC---IQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLD 930 (1007)
Q Consensus 854 KvIIFsq~~~~ld~L~~~L~~~g---i~~~~i~Gs~s~~~R~~~I~~F~~~~~~~VlLlStkagg~GLNL~~A~~VI~~D 930 (1007)
++|||..-...++.+.+.|.+.+ +.+..++|+++.++|+++++.+ +. +-+|++|..+..||++....+||.++
T Consensus 281 dILVFLpg~~EI~~l~~~L~~~~~~~~~VlpLhg~Ls~~eQ~~vf~~~---~~-rkIVLATNIAEtSLTIpgV~yVIDsG 356 (1283)
T TIGR01967 281 DILIFLPGEREIRDAAEILRKRNLRHTEILPLYARLSNKEQQRVFQPH---SG-RRIVLATNVAETSLTVPGIHYVIDTG 356 (1283)
T ss_pred CEEEeCCCHHHHHHHHHHHHhcCCCCcEEEeccCCCCHHHHHHHhCCC---CC-ceEEEeccHHHhccccCCeeEEEeCC
Confidence 89999999999999999998874 4578899999999999885544 23 34566889999999999999999887
Q ss_pred CC----C--------------CCChhHHHhHhhhccCCcccEEEEEEEeCCCHH
Q 001840 931 LW----W--------------NPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVE 966 (1007)
Q Consensus 931 p~----W--------------Np~~e~QaigRi~RiGQ~k~V~VyrLi~~~TIE 966 (1007)
.. + +.+...||.||++|.| +=..|+|+++...+
T Consensus 357 l~r~~~yd~~~~~~~L~~~~ISkasa~QRaGRAGR~~---~G~cyRLyte~~~~ 407 (1283)
T TIGR01967 357 TARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVA---PGICIRLYSEEDFN 407 (1283)
T ss_pred CccccccccccCccccCCccCCHHHHHHHhhhhCCCC---CceEEEecCHHHHH
Confidence 42 2 2347789999999997 66778999876443
No 114
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=98.93 E-value=8.3e-09 Score=111.69 Aligned_cols=105 Identities=18% Similarity=0.259 Sum_probs=91.2
Q ss_pred eEEEEecchhHHHHHHHHHhhcCCeEEEecCCCChHHHHHHHHhhccCcccceeeeeccCcccccccccCCEEEEecCCC
Q 001840 854 KSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDLWW 933 (1007)
Q Consensus 854 KvIIFsq~~~~ld~L~~~L~~~gi~~~~i~Gs~s~~~R~~~I~~F~~~~~~~VlLlStkagg~GLNL~~A~~VI~~Dp~W 933 (1007)
..||||+-..++..|...|...|..+..++|.+...+|.+++++|+.+ .-+||+ +|.+.+.|++.+..+.||+||+|-
T Consensus 332 qsiIFc~tk~ta~~l~~~m~~~Gh~V~~l~G~l~~~~R~~ii~~Fr~g-~~kVLi-tTnV~ARGiDv~qVs~VvNydlP~ 409 (477)
T KOG0332|consen 332 QSIIFCHTKATAMWLYEEMRAEGHQVSLLHGDLTVEQRAAIIDRFREG-KEKVLI-TTNVCARGIDVAQVSVVVNYDLPV 409 (477)
T ss_pred heEEEEeehhhHHHHHHHHHhcCceeEEeeccchhHHHHHHHHHHhcC-cceEEE-EechhhcccccceEEEEEecCCcc
Confidence 679999999999999999999999999999999999999999999975 445555 789999999999999999999995
Q ss_pred ------CCChhHHHhHhhhccCCcccEEEEEEEeC
Q 001840 934 ------NPTTEDQAVDRAHRIGQTRPVTVTRLTIR 962 (1007)
Q Consensus 934 ------Np~~e~QaigRi~RiGQ~k~V~VyrLi~~ 962 (1007)
.+.++..||||.+|+|.+ .+-|- |+-.
T Consensus 410 ~~~~~pD~etYlHRiGRtGRFGkk-G~a~n-~v~~ 442 (477)
T KOG0332|consen 410 KYTGEPDYETYLHRIGRTGRFGKK-GLAIN-LVDD 442 (477)
T ss_pred ccCCCCCHHHHHHHhccccccccc-ceEEE-eecc
Confidence 456889999999999965 33333 5533
No 115
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=98.91 E-value=8.6e-07 Score=108.94 Aligned_cols=130 Identities=12% Similarity=0.128 Sum_probs=105.2
Q ss_pred chhhHHHHHHHHHhhhhcccccchhhhhhcccCCCCCccccCCCCCCCCeEEEEecchhHHHHHHHHHhhcCCeEEEecC
Q 001840 805 ISSKIRTVLDILHTQCELNTKCSIVEIHDLAGSNGSSAVHSKSPIEGPIKSIVFSQWTRMLDLVENSLNQHCIQYRRLDG 884 (1007)
Q Consensus 805 ~SsKl~~l~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvIIFsq~~~~ld~L~~~L~~~gi~~~~i~G 884 (1007)
...|+.++++.|.+....+. .+||||.+....+.|...|.+.||++..|++
T Consensus 580 ~~eK~~Ali~~I~~~~~~gr-----------------------------pVLIft~Sve~sE~Ls~~L~~~gI~h~vLna 630 (1025)
T PRK12900 580 RREKYNAIVLKVEELQKKGQ-----------------------------PVLVGTASVEVSETLSRMLRAKRIAHNVLNA 630 (1025)
T ss_pred HHHHHHHHHHHHHHHhhCCC-----------------------------CEEEEeCcHHHHHHHHHHHHHcCCCceeecC
Confidence 35699999999988766666 9999999999999999999999999999997
Q ss_pred CCChHHHHHHHHhhccCcccceeeeeccCcccccccccCC--------EEEEecCCCCCChhHHHhHhhhccCCcccEEE
Q 001840 885 TMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAAS--------HVILLDLWWNPTTEDQAVDRAHRIGQTRPVTV 956 (1007)
Q Consensus 885 s~s~~~R~~~I~~F~~~~~~~VlLlStkagg~GLNL~~A~--------~VI~~Dp~WNp~~e~QaigRi~RiGQ~k~V~V 956 (1007)
...+|++.|..|... ...| +++|..+|.|+++.-.. +||.++.+-+...+.|++||++|.|..=....
T Consensus 631 --kq~~REa~Iia~AG~-~g~V-tIATNMAGRGtDIkl~~~V~~vGGL~VIgterhes~Rid~Ql~GRtGRqGdpGsS~f 706 (1025)
T PRK12900 631 --KQHDREAEIVAEAGQ-KGAV-TIATNMAGRGTDIKLGEGVRELGGLFILGSERHESRRIDRQLRGRAGRQGDPGESVF 706 (1025)
T ss_pred --CHHHhHHHHHHhcCC-CCeE-EEeccCcCCCCCcCCccchhhhCCceeeCCCCCchHHHHHHHhhhhhcCCCCcceEE
Confidence 468999999999864 3344 55779999999988433 45889999999999999999999998744322
Q ss_pred EEEEeCCCHHHHHHHH
Q 001840 957 TRLTIRDTVEDRILKL 972 (1007)
Q Consensus 957 yrLi~~~TIEe~I~~l 972 (1007)
|+ |.|+.++.+
T Consensus 707 --fv---SleD~Lmr~ 717 (1025)
T PRK12900 707 --YV---SLEDELMRL 717 (1025)
T ss_pred --Ee---chhHHHHHh
Confidence 11 456666544
No 116
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=98.90 E-value=1.5e-07 Score=113.65 Aligned_cols=83 Identities=20% Similarity=0.174 Sum_probs=61.5
Q ss_pred ecCCCChHHHHHHHHhhccCcccceeeeeccCcccccccccCCEEEEecCCCCCCh----------hHHHhHhhhccCCc
Q 001840 882 LDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDLWWNPTT----------EDQAVDRAHRIGQT 951 (1007)
Q Consensus 882 i~Gs~s~~~R~~~I~~F~~~~~~~VlLlStkagg~GLNL~~A~~VI~~Dp~WNp~~----------e~QaigRi~RiGQ~ 951 (1007)
=+.+|...+|+.+=+.|..+ .++|+. +|...+-|+||++-..+|-=-+.|++.. ..|-+||++|..=.
T Consensus 402 HhAGm~r~DR~l~E~~F~~G-~i~vL~-cTaTLAwGVNLPA~aViIKGT~~ydsskg~f~dlgilDVlQifGRAGRPqFd 479 (1230)
T KOG0952|consen 402 HHAGMLRSDRQLVEKEFKEG-HIKVLC-CTATLAWGVNLPAYAVIIKGTQVYDSSKGSFVDLGILDVLQIFGRAGRPQFD 479 (1230)
T ss_pred cccccchhhHHHHHHHHhcC-CceEEE-ecceeeeccCCcceEEEecCCcccccccCceeeehHHHHHHHHhccCCCCCC
Confidence 35678889999998999965 666766 6699999999998777775666677664 67999999998755
Q ss_pred ccEEEEEEEeCCCHH
Q 001840 952 RPVTVTRLTIRDTVE 966 (1007)
Q Consensus 952 k~V~VyrLi~~~TIE 966 (1007)
..=..+.+...+.++
T Consensus 480 ~~G~giIiTt~dkl~ 494 (1230)
T KOG0952|consen 480 SSGEGIIITTRDKLD 494 (1230)
T ss_pred CCceEEEEecccHHH
Confidence 554444555555444
No 117
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=98.88 E-value=2.8e-07 Score=110.17 Aligned_cols=130 Identities=14% Similarity=0.137 Sum_probs=100.6
Q ss_pred chhhHHHHHHHHHhhhhcccccchhhhhhcccCCCCCccccCCCCCCCCeEEEEecchhHHHHHHHHHhhcCCeEEEecC
Q 001840 805 ISSKIRTVLDILHTQCELNTKCSIVEIHDLAGSNGSSAVHSKSPIEGPIKSIVFSQWTRMLDLVENSLNQHCIQYRRLDG 884 (1007)
Q Consensus 805 ~SsKl~~l~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvIIFsq~~~~ld~L~~~L~~~gi~~~~i~G 884 (1007)
...|+.++++.+.+..+.+. -|||.+......+.|...|.+.||++.+++.
T Consensus 409 ~~~k~~Aii~ei~~~~~~Gr-----------------------------PVLVgt~sI~~SE~ls~~L~~~gI~h~vLNA 459 (764)
T PRK12326 409 AAEKNDAIVEHIAEVHETGQ-----------------------------PVLVGTHDVAESEELAERLRAAGVPAVVLNA 459 (764)
T ss_pred HHHHHHHHHHHHHHHHHcCC-----------------------------CEEEEeCCHHHHHHHHHHHHhCCCcceeecc
Confidence 46799999999998888777 8999999999999999999999999999998
Q ss_pred CCChHHHHHHHHhhccCcccceeeeeccCccccccccc---------------CCEEEEecCCCCCChhHHHhHhhhccC
Q 001840 885 TMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVA---------------ASHVILLDLWWNPTTEDQAVDRAHRIG 949 (1007)
Q Consensus 885 s~s~~~R~~~I~~F~~~~~~~VlLlStkagg~GLNL~~---------------A~~VI~~Dp~WNp~~e~QaigRi~RiG 949 (1007)
... ++-.++|.+-- ...-+-++|.-+|.|-++.- .=|||.-+.+-|-..+.|..||+.|.|
T Consensus 460 k~~-~~EA~IIa~AG---~~gaVTIATNMAGRGTDIkLg~~~~~~~~~V~~~GGLhVIgTerheSrRID~QLrGRaGRQG 535 (764)
T PRK12326 460 KND-AEEARIIAEAG---KYGAVTVSTQMAGRGTDIRLGGSDEADRDRVAELGGLHVIGTGRHRSERLDNQLRGRAGRQG 535 (764)
T ss_pred Cch-HhHHHHHHhcC---CCCcEEEEecCCCCccCeecCCCcccchHHHHHcCCcEEEeccCCchHHHHHHHhcccccCC
Confidence 754 33345555433 22334557799999977553 448999999999999999999999999
Q ss_pred CcccEEEEEEEeCCCHHHHHHHH
Q 001840 950 QTRPVTVTRLTIRDTVEDRILKL 972 (1007)
Q Consensus 950 Q~k~V~VyrLi~~~TIEe~I~~l 972 (1007)
..=....|- |+|+.++.+
T Consensus 536 DpGss~f~l-----SleDdl~~~ 553 (764)
T PRK12326 536 DPGSSVFFV-----SLEDDVVAA 553 (764)
T ss_pred CCCceeEEE-----EcchhHHHh
Confidence 875544332 455555544
No 118
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=98.85 E-value=9.5e-08 Score=121.77 Aligned_cols=105 Identities=17% Similarity=0.212 Sum_probs=84.0
Q ss_pred eEEEEecchhHHHHHHHHHhhcCCe---EEEecCCCChHHHHHHHHhhccCcccceeeeeccCcccccccccCCEEEEec
Q 001840 854 KSIVFSQWTRMLDLVENSLNQHCIQ---YRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLD 930 (1007)
Q Consensus 854 KvIIFsq~~~~ld~L~~~L~~~gi~---~~~i~Gs~s~~~R~~~I~~F~~~~~~~VlLlStkagg~GLNL~~A~~VI~~D 930 (1007)
++|||+.....++.+.+.|...+++ +..++|+++.++|.++++.+ +..+ +|++|..+..||++....+||.++
T Consensus 288 dILVFLpg~~EIe~lae~L~~~~~~~~~VlpLhg~Ls~~eQ~~Vf~~~---g~rk-IIVATNIAEtSITIpgI~yVID~G 363 (1294)
T PRK11131 288 DILIFMSGEREIRDTADALNKLNLRHTEILPLYARLSNSEQNRVFQSH---SGRR-IVLATNVAETSLTVPGIKYVIDPG 363 (1294)
T ss_pred CEEEEcCCHHHHHHHHHHHHhcCCCcceEeecccCCCHHHHHHHhccc---CCee-EEEeccHHhhccccCcceEEEECC
Confidence 8999999999999999999988765 56789999999999887653 2334 556889999999999999999975
Q ss_pred ---------------CCCCC---ChhHHHhHhhhccCCcccEEEEEEEeCCCH
Q 001840 931 ---------------LWWNP---TTEDQAVDRAHRIGQTRPVTVTRLTIRDTV 965 (1007)
Q Consensus 931 ---------------p~WNp---~~e~QaigRi~RiGQ~k~V~VyrLi~~~TI 965 (1007)
++-.| +...||.||++|. .+=..|+|+.++..
T Consensus 364 l~k~~~Yd~~~~~~~Lp~~~iSkasa~QRaGRAGR~---~~G~c~rLyte~d~ 413 (1294)
T PRK11131 364 TARISRYSYRTKVQRLPIEPISQASANQRKGRCGRV---SEGICIRLYSEDDF 413 (1294)
T ss_pred CccccccccccCcccCCeeecCHhhHhhhccccCCC---CCcEEEEeCCHHHH
Confidence 33334 5678888888887 35667788876543
No 119
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=98.85 E-value=8.5e-09 Score=104.87 Aligned_cols=158 Identities=18% Similarity=0.238 Sum_probs=104.4
Q ss_pred hHHHHHHHHHHHhhhcCCCccCceeecCCCCchHHHHHHHHHhhccccccchhhhccccccccccCCCCCCCCCcCcccc
Q 001840 277 KHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLDDDDDNGNAGLDKV 356 (1007)
Q Consensus 277 pyQ~~~v~wml~~e~~~~~~~GGILADdmGLGKTiqaIali~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (1007)
|+|.+++.-+++. ...++.-.+|.|||..++..+......
T Consensus 2 ~~Q~~~~~~i~~~-------~~~li~aptGsGKT~~~~~~~l~~~~~--------------------------------- 41 (169)
T PF00270_consen 2 PLQQEAIEAIISG-------KNVLISAPTGSGKTLAYILPALNRLQE--------------------------------- 41 (169)
T ss_dssp HHHHHHHHHHHTT-------SEEEEECSTTSSHHHHHHHHHHHHHHT---------------------------------
T ss_pred HHHHHHHHHHHcC-------CCEEEECCCCCccHHHHHHHHHhhhcc---------------------------------
Confidence 8999999988732 125899999999999887655432211
Q ss_pred cccCCCCCCCCCCcccccccccCCCCCCCceEEEcChh-hHHHHHHHHHHHcCCCCCeEEEEEeCCCCCC-C-ccc-cCC
Q 001840 357 KETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPAS-VLRQWARELEDKVPDKAALSVLIYHGGSRTK-D-PVE-LAK 432 (1007)
Q Consensus 357 k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tLIV~P~s-Ll~QW~~Ei~k~~~~~~~l~vlv~~g~~r~~-~-~~~-l~~ 432 (1007)
...+.+||+||.. ++.|=.+++.+++.. ..+++..++|..... + ... ..+
T Consensus 42 -------------------------~~~~~~lii~P~~~l~~q~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (169)
T PF00270_consen 42 -------------------------GKDARVLIIVPTRALAEQQFERLRKFFSN-TNVRVVLLHGGQSISEDQREVLSNQ 95 (169)
T ss_dssp -------------------------TSSSEEEEEESSHHHHHHHHHHHHHHTTT-TTSSEEEESTTSCHHHHHHHHHHTT
T ss_pred -------------------------CCCceEEEEeecccccccccccccccccc-ccccccccccccccccccccccccc
Confidence 1112589999955 889999999998875 257777777765422 1 112 257
Q ss_pred CcEEEechhhhhccCCCCCCCchhhhhhhcCcccCCcchhhhhhhhcccccccccccCCCCCCCCCCcccCCCCccccce
Q 001840 433 YDVVLTTYSIVTNEVPKQPSVDEEEADEKNGETYGLSSEFSVNKKRKKISNVSKRGKKGKKGNVNSSIDYGCGPLAKVGW 512 (1007)
Q Consensus 433 ~dVVItSy~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~k~~~~~~k~~~~~~~~~~~~~L~~~~w 512 (1007)
.+|+|+|++.+...+... .+.....
T Consensus 96 ~~ilv~T~~~l~~~~~~~-------------------------------------------------------~~~~~~~ 120 (169)
T PF00270_consen 96 ADILVTTPEQLLDLISNG-------------------------------------------------------KINISRL 120 (169)
T ss_dssp SSEEEEEHHHHHHHHHTT-------------------------------------------------------SSTGTTE
T ss_pred ccccccCcchhhcccccc-------------------------------------------------------ccccccc
Confidence 999999999987532110 0011226
Q ss_pred eEEEEccCcccCCc--ccHHHHHHHhc---ccCcEEEEeccCCCCChhH
Q 001840 513 FRVVLDEAQTIKNH--RTQVARACCSL---RAKRRWCLSGTPIQNSIDD 556 (1007)
Q Consensus 513 ~rVIlDEAH~iKN~--~s~~~kal~~L---~a~~r~lLTGTPi~N~l~D 556 (1007)
.+||+||+|.+... .......+..+ +..+.+++||||- .++.+
T Consensus 121 ~~iViDE~h~l~~~~~~~~~~~i~~~~~~~~~~~~i~~SAT~~-~~~~~ 168 (169)
T PF00270_consen 121 SLIVIDEAHHLSDETFRAMLKSILRRLKRFKNIQIILLSATLP-SNVEK 168 (169)
T ss_dssp SEEEEETHHHHHHTTHHHHHHHHHHHSHTTTTSEEEEEESSST-HHHHH
T ss_pred eeeccCcccccccccHHHHHHHHHHHhcCCCCCcEEEEeeCCC-hhHhh
Confidence 78999999998653 22233333344 2457899999997 55443
No 120
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=98.82 E-value=3.1e-08 Score=107.29 Aligned_cols=242 Identities=20% Similarity=0.226 Sum_probs=146.3
Q ss_pred ccCchHHHHHHHHHHHhhhcCC---CccCceeecCCCCchHHHHHHHHHhhccccccchhhhccccccccccCCCCCCCC
Q 001840 273 VNLLKHQKIALAWMLQKETRSL---HCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLDDDDDNG 349 (1007)
Q Consensus 273 ~~LrpyQ~~~v~wml~~e~~~~---~~~GGILADdmGLGKTiqaIali~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (1007)
..|=.-|+++|.+..++....+ ...|-+|+|.+|+||-.|+.++|..+...
T Consensus 36 g~LS~~QLEaV~yA~q~h~~~Lp~~~R~Gf~lGDGtGvGKGR~iAgiI~~n~l~-------------------------- 89 (303)
T PF13872_consen 36 GLLSALQLEAVIYACQRHEQILPGGSRAGFFLGDGTGVGKGRQIAGIILENWLR-------------------------- 89 (303)
T ss_pred ccccHHHHHHHHHHHHHHHhhcccccCcEEEeccCCCcCccchhHHHHHHHHHc--------------------------
Confidence 3477899999999987655322 23678999999999999999998764332
Q ss_pred CcCcccccccCCCCCCCCCCcccccccccCCCCCCCceEEEcChhhHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCccc
Q 001840 350 NAGLDKVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVE 429 (1007)
Q Consensus 350 ~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tLIV~P~sLl~QW~~Ei~k~~~~~~~l~vlv~~g~~r~~~~~~ 429 (1007)
+..+++=|-+...|..--++.+...-.. .+.+.....-+... . .
T Consensus 90 --------------------------------Gr~r~vwvS~s~dL~~Da~RDl~DIG~~--~i~v~~l~~~~~~~-~-~ 133 (303)
T PF13872_consen 90 --------------------------------GRKRAVWVSVSNDLKYDAERDLRDIGAD--NIPVHPLNKFKYGD-I-I 133 (303)
T ss_pred --------------------------------CCCceEEEECChhhhhHHHHHHHHhCCC--cccceechhhccCc-C-C
Confidence 2223344555566776666667653221 33333333322221 1 1
Q ss_pred cCCCcEEEechhhhhccCCCCCCCchhhhhhhcCcccCCcchhhhhhhhcccccccccccCCCCCCCCCCcccCCCCccc
Q 001840 430 LAKYDVVLTTYSIVTNEVPKQPSVDEEEADEKNGETYGLSSEFSVNKKRKKISNVSKRGKKGKKGNVNSSIDYGCGPLAK 509 (1007)
Q Consensus 430 l~~~dVVItSy~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~k~~~~~~k~~~~~~~~~~~~~L~~ 509 (1007)
-.+..|+.+||+.|..+.... .++.. .|.+
T Consensus 134 ~~~~GvlF~TYs~L~~~~~~~---------------------------~~~~s-----------------------Rl~q 163 (303)
T PF13872_consen 134 RLKEGVLFSTYSTLISESQSG---------------------------GKYRS-----------------------RLDQ 163 (303)
T ss_pred CCCCCccchhHHHHHhHHhcc---------------------------CCccc-----------------------hHHH
Confidence 235679999999998652110 00000 0111
Q ss_pred -cce------eEEEEccCcccCCccc------HHHHHHHhcc----cCcEEEEeccCCCCChhHHHHHHHH--Hh-cCCc
Q 001840 510 -VGW------FRVVLDEAQTIKNHRT------QVARACCSLR----AKRRWCLSGTPIQNSIDDLYSYFRF--LK-YDPY 569 (1007)
Q Consensus 510 -~~w------~rVIlDEAH~iKN~~s------~~~kal~~L~----a~~r~lLTGTPi~N~l~DL~sll~f--L~-~~~~ 569 (1007)
+.| .+||+||||..||..+ ++..++..|+ .-+.+-.|||.... +..|--+-++ -. .-+|
T Consensus 164 l~~W~g~dfdgvivfDEcH~akn~~~~~~~~sk~g~avl~LQ~~LP~ARvvY~SATgase-p~NmaYm~RLGLWG~gtpf 242 (303)
T PF13872_consen 164 LVDWCGEDFDGVIVFDECHKAKNLSSGSKKPSKTGIAVLELQNRLPNARVVYASATGASE-PRNMAYMSRLGLWGPGTPF 242 (303)
T ss_pred HHHHHhcCCCceEEeccchhcCCCCccCccccHHHHHHHHHHHhCCCCcEEEecccccCC-CceeeeeeeccccCCCCCC
Confidence 112 3799999999999654 5667777663 34688899998743 3333222221 11 1246
Q ss_pred chhHHHHHHcccCcccCchhHHHHHHHHH--HHhhhhcccCcccCCCccccCCCceEEEEEecCCHHHHHHHHH
Q 001840 570 AVYKSFYSTIKIPISRNSLHGYKKLQAVL--RAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEWAFYKK 641 (1007)
Q Consensus 570 ~~~~~F~~~~~~pi~~~~~~~~~~L~~~L--~~~~lRRtk~~v~~g~~~~~LP~k~~~~v~v~ls~~er~lY~~ 641 (1007)
.++.+|...++ ++....++.+..-| ...+++|... +-.....++.+++++++.++|+.
T Consensus 243 ~~~~~f~~a~~----~gGv~amE~vA~dlKa~G~yiaR~LS----------f~gvef~~~e~~l~~~~~~~Yd~ 302 (303)
T PF13872_consen 243 PDFDDFLEAME----KGGVGAMEMVAMDLKARGMYIARQLS----------FEGVEFEIEEVPLTPEQIKMYDA 302 (303)
T ss_pred CCHHHHHHHHH----hcCchHHHHHHHHHHhcchheeeecc----------cCCceEEEEEecCCHHHHHHhcC
Confidence 67777777664 33444444444433 3456676653 34456789999999999999974
No 121
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=98.76 E-value=2.4e-08 Score=108.12 Aligned_cols=137 Identities=20% Similarity=0.280 Sum_probs=113.1
Q ss_pred hhhHHHHHHHHHhhhhcccccchhhhhhcccCCCCCccccCCCCCCCCeEEEEecchhHHHHHHHHHhhcCCeEEEecCC
Q 001840 806 SSKIRTVLDILHTQCELNTKCSIVEIHDLAGSNGSSAVHSKSPIEGPIKSIVFSQWTRMLDLVENSLNQHCIQYRRLDGT 885 (1007)
Q Consensus 806 SsKl~~l~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvIIFsq~~~~ld~L~~~L~~~gi~~~~i~Gs 885 (1007)
..|+..|++.|++.. .+||||+.-..-.|-|.++|--.|+..+.|+|+
T Consensus 407 EaKiVylLeCLQKT~--------------------------------PpVLIFaEkK~DVD~IhEYLLlKGVEavaIHGG 454 (610)
T KOG0341|consen 407 EAKIVYLLECLQKTS--------------------------------PPVLIFAEKKADVDDIHEYLLLKGVEAVAIHGG 454 (610)
T ss_pred hhhhhhHHHHhccCC--------------------------------CceEEEeccccChHHHHHHHHHccceeEEeecC
Confidence 578889988886532 289999999999999999999999999999999
Q ss_pred CChHHHHHHHHhhccCcccceeeeeccCcccccccccCCEEEEecCCCCCChhHHHhHhhhccCCcccEEEEEEEeCCCH
Q 001840 886 MSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTV 965 (1007)
Q Consensus 886 ~s~~~R~~~I~~F~~~~~~~VlLlStkagg~GLNL~~A~~VI~~Dp~WNp~~e~QaigRi~RiGQ~k~V~VyrLi~~~TI 965 (1007)
..+++|..+|+.|+.+ +-.||+ .|++++-||+++...|||+||.|-.-..+..||||.+|-|.+-- -..|+-+++-
T Consensus 455 KDQedR~~ai~afr~g-kKDVLV-ATDVASKGLDFp~iqHVINyDMP~eIENYVHRIGRTGRsg~~Gi--ATTfINK~~~ 530 (610)
T KOG0341|consen 455 KDQEDRHYAIEAFRAG-KKDVLV-ATDVASKGLDFPDIQHVINYDMPEEIENYVHRIGRTGRSGKTGI--ATTFINKNQE 530 (610)
T ss_pred cchhHHHHHHHHHhcC-CCceEE-EecchhccCCCccchhhccCCChHHHHHHHHHhcccCCCCCcce--eeeeecccch
Confidence 9999999999999976 444555 67999999999999999999999888888899999999887742 2346666666
Q ss_pred HHHHHH----HHHHHHH
Q 001840 966 EDRILK----LQDDKRK 978 (1007)
Q Consensus 966 Ee~I~~----lq~~K~~ 978 (1007)
|.-++. +++.|++
T Consensus 531 esvLlDLK~LL~EakQ~ 547 (610)
T KOG0341|consen 531 ESVLLDLKHLLQEAKQE 547 (610)
T ss_pred HHHHHHHHHHHHHhhcc
Confidence 655554 4556654
No 122
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=98.75 E-value=7.6e-07 Score=111.11 Aligned_cols=124 Identities=14% Similarity=0.119 Sum_probs=95.8
Q ss_pred eEEEEecchhHHHHHHHHHhhcCCeEEEecCCCChHHHHHHHHhhcc--CcccceeeeeccCcccccccccCCEEEEecC
Q 001840 854 KSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNT--DREITVMLMSLKAGNLGLNMVAASHVILLDL 931 (1007)
Q Consensus 854 KvIIFsq~~~~ld~L~~~L~~~gi~~~~i~Gs~s~~~R~~~I~~F~~--~~~~~VlLlStkagg~GLNL~~A~~VI~~Dp 931 (1007)
|++|-++-...+..+...|+..+..++.+++.+....|.+.++...+ ..+...++++|++.-.|+++. .+.+| -|+
T Consensus 442 kvlvI~NTV~~Aie~Y~~Lk~~~~~v~LlHSRf~~~dR~~ke~~l~~~~~~~~~~IvVaTQVIEagvDid-fd~mI-Te~ 519 (733)
T COG1203 442 KVLVIVNTVDRAIELYEKLKEKGPKVLLLHSRFTLKDREEKERELKKLFKQNEGFIVVATQVIEAGVDID-FDVLI-TEL 519 (733)
T ss_pred cEEEEEecHHHHHHHHHHHHhcCCCEEEEecccchhhHHHHHHHHHHHHhccCCeEEEEeeEEEEEeccc-cCeee-ecC
Confidence 99999999999999999999998889999999999999999886553 223345566889999999998 44443 333
Q ss_pred CCCCChhHHHhHhhhccC--CcccEEEEEEEeCCCHHHHHHHHHHHHHHHH
Q 001840 932 WWNPTTEDQAVDRAHRIG--QTRPVTVTRLTIRDTVEDRILKLQDDKRKMV 980 (1007)
Q Consensus 932 ~WNp~~e~QaigRi~RiG--Q~k~V~VyrLi~~~TIEe~I~~lq~~K~~li 980 (1007)
. -.....||.|||+|-| ....++|+...-......+.++....+....
T Consensus 520 a-PidSLIQR~GRv~R~g~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 569 (733)
T COG1203 520 A-PIDSLIQRAGRVNRHGKKENGKIYVYNDEERGPYLKYSYEKLEKKLKSL 569 (733)
T ss_pred C-CHHHHHHHHHHHhhcccccCCceeEeecccCCCchhhhhhcchhhhccc
Confidence 2 2357889999999999 4556888888777777777666666555443
No 123
>PF11496 HDA2-3: Class II histone deacetylase complex subunits 2 and 3; InterPro: IPR021006 This entry contains the class II histone deacetylase complex subunits HDA2 and HDA3 is found in fungi. The member from Schizosaccharomyces pombe (Fission yeast) is referred to as Ccq1 in Q10432 from SWISSPROT. These proteins associate with HDA1 to generate the activity of the HDA1 histone deacetylase complex. HDA1 interacts with itself and with the HDA2-HDA3 subcomplex to form a probable tetramer and these interactions are necessary for catalytic activity. The HDA1 histone deacetylase complex is responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. HDA2 and HDA3 have a conserved coiled-coil domain towards their C terminus []. ; PDB: 3HGQ_C 3HGT_B.
Probab=98.69 E-value=6.1e-07 Score=99.15 Aligned_cols=225 Identities=16% Similarity=0.182 Sum_probs=129.8
Q ss_pred EEEEEecCCHHHHHHHHHHHHHHHHHHHHHhhcCCCccc---------HHHHHHHHHHHHhhcCcccccccccccccccc
Q 001840 624 ISLTKVDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQN---------YANILLMLLRLRQACDHPLLVKEYDFDSVGKI 694 (1007)
Q Consensus 624 ~~~v~v~ls~~er~lY~~l~~~~~~~~~~~~~~g~~~~~---------~~~il~~L~rLRq~~~hP~L~~~~~~~~~~~~ 694 (1007)
++.+.++|+..|+++|+.+.......+..+......... ...+-.++.+|+.+|+||.|+.+......-..
T Consensus 5 ~y~lP~pmt~~QKdl~e~iislh~~~il~~~~~~~~~~~i~~~~~~~~~~~~~~~~~nl~~V~~HP~LlvdH~mPk~ll~ 84 (297)
T PF11496_consen 5 EYYLPTPMTSFQKDLYEQIISLHYSDILKFCETNDSSESIDSLLDESLVQSMELLIENLRLVANHPSLLVDHYMPKQLLL 84 (297)
T ss_dssp EEEEEE---HHHHHHHHHHHHHTHHHHHHHHHSTTT--HHHH-------HHHHHHHHHHHHHHH-GGGT--TT--S-S-S
T ss_pred eEEEecCccHHHHHHHHHHHHHHHHHHHHHHcccCccccccchhhhhhHHHHHHHHHHHHHhccCccccccccCcccccc
Confidence 678899999999999999999888888877654443332 25667788999999999999765332110000
Q ss_pred hHHHhhcCChHHHHHHHhhcccccccccccCCCCCCccccccCcccchhhhhhhccCCCCCCCCcchhhcccccceeccc
Q 001840 695 SGEMAKRLPRDMLIDLLSRLETSSAICCVCSDPPEDSVVTMCGHVFCYQCASEYITGDDNMCPAPRCKEQLGADVVFSKT 774 (1007)
Q Consensus 695 ~~e~~~~~~~~~~~~ll~~le~~~~~C~~c~d~~~~~v~t~CgH~~c~~ci~~~~~~~~~~cp~~~cr~~l~~~~~~~~~ 774 (1007)
.
T Consensus 85 ~------------------------------------------------------------------------------- 85 (297)
T PF11496_consen 85 S------------------------------------------------------------------------------- 85 (297)
T ss_dssp T-------------------------------------------------------------------------------
T ss_pred c-------------------------------------------------------------------------------
Confidence 0
Q ss_pred ccccccCCCCCCCCCCCcccccCCCcCcccchhhHHHHHHHHHhhhhcccccchhhhhhcccCCCCCccccCCCCCCCCe
Q 001840 775 TLKNCVSDDGGGSPTDSPFADKSGILDNEYISSKIRTVLDILHTQCELNTKCSIVEIHDLAGSNGSSAVHSKSPIEGPIK 854 (1007)
Q Consensus 775 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SsKl~~l~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~K 854 (1007)
.......+.|+|+..|-++|..+..... ...+.+
T Consensus 86 ----------------------e~~~~~~~tS~KF~~L~~Li~~li~~~~------------------------~~~~~~ 119 (297)
T PF11496_consen 86 ----------------------EPAEWLAYTSGKFQFLNDLIDSLIDRDR------------------------REYPLH 119 (297)
T ss_dssp ----------------------THHHHHHHT-HHHHHHHHHHHHH-----------------------------TTSSEE
T ss_pred ----------------------hHHHHHHHcCchHHHHHHHHHHHHhhhc------------------------ccCCce
Confidence 0001112469999999999988854221 112349
Q ss_pred EEEEecchhHHHHHHHHHhhcCCeEEEecCCCChHHHHHHH------------Hhhcc--CcccceeeeeccCccc----
Q 001840 855 SIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAV------------KDFNT--DREITVMLMSLKAGNL---- 916 (1007)
Q Consensus 855 vIIFsq~~~~ld~L~~~L~~~gi~~~~i~Gs~s~~~R~~~I------------~~F~~--~~~~~VlLlStkagg~---- 916 (1007)
+||.++...++|+|+..|...++.|.++.|..-..+....- ..... ...+.|.|++++-...
T Consensus 120 ilIv~~~~k~ldllE~~llGk~~~~kr~sg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~L~ts~~l~~~~~~ 199 (297)
T PF11496_consen 120 ILIVSRSGKELDLLEGLLLGKKLNYKRYSGESLYDEKHKVPKNGNTESNSSNNSKKKDKGSLSVWIHLITSDQLYNNKPP 199 (297)
T ss_dssp EEEEE-STHHHHHHHHHHTTSSSEEEESSS--S--S---S----------------------SEEEEEEESS---TTTS-
T ss_pred EEEEecCccHHHHHHHHHccCCeeEEecCCCCCcCccccCCcccccccccccccccccccccceEEEEecCccccccCCC
Confidence 99999999999999999999999999999976544433322 01111 2356677777654433
Q ss_pred ccccccCCEEEEecCCCCCChhHHHhHhhhccCCcccEEEEEEEeCCCHHHHHHHHHH
Q 001840 917 GLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVEDRILKLQD 974 (1007)
Q Consensus 917 GLNL~~A~~VI~~Dp~WNp~~e~QaigRi~RiGQ~k~V~VyrLi~~~TIEe~I~~lq~ 974 (1007)
.++-...+.||-+|+.+++....-..-|...-.+ +.+-|++|++.+|+|--++....
T Consensus 200 ~~~~~~~d~IIsfD~~~d~~~p~i~~lR~~~~~~-~~~PiirLv~~nSiEHi~L~~~~ 256 (297)
T PF11496_consen 200 LLSNYNFDLIISFDPSFDTSLPSIEQLRTQNRRN-RLCPIIRLVPSNSIEHIELCFPK 256 (297)
T ss_dssp -TT-S-EEEEEE-SST--TTSHHHHHHH--------S--EEEEEETTSHHHHHHHHTT
T ss_pred ccccCCcCEEEEecCCCCCCChHHHHHHhhcCCC-CCCcEEEEeeCCCHHHHHHHccC
Confidence 1333446889999999999875544334333223 88999999999999998876554
No 124
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=98.66 E-value=1.3e-05 Score=86.83 Aligned_cols=102 Identities=15% Similarity=0.157 Sum_probs=76.8
Q ss_pred eEEEEecchhHHHHHHHHHhhc-C-CeEEEecCCCChHHHHHHHHhhccCcccceeeeeccCcccccccccCCEEEEecC
Q 001840 854 KSIVFSQWTRMLDLVENSLNQH-C-IQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDL 931 (1007)
Q Consensus 854 KvIIFsq~~~~ld~L~~~L~~~-g-i~~~~i~Gs~s~~~R~~~I~~F~~~~~~~VlLlStkagg~GLNL~~A~~VI~~Dp 931 (1007)
-++||.....+++-+.+.|++. + .....++... ..|.+.|+.|+++ ... +|++|..+-.|+.+...+..++=.-
T Consensus 307 P~liF~p~I~~~eq~a~~lk~~~~~~~i~~Vhs~d--~~R~EkV~~fR~G-~~~-lLiTTTILERGVTfp~vdV~Vlgae 382 (441)
T COG4098 307 PVLIFFPEIETMEQVAAALKKKLPKETIASVHSED--QHRKEKVEAFRDG-KIT-LLITTTILERGVTFPNVDVFVLGAE 382 (441)
T ss_pred cEEEEecchHHHHHHHHHHHhhCCccceeeeeccC--ccHHHHHHHHHcC-ceE-EEEEeehhhcccccccceEEEecCC
Confidence 7899999999999999999554 2 2224444443 6799999999965 444 5558899999999999998777543
Q ss_pred C--CCCChhHHHhHhhhccCCcc--cEEEEEE
Q 001840 932 W--WNPTTEDQAVDRAHRIGQTR--PVTVTRL 959 (1007)
Q Consensus 932 ~--WNp~~e~QaigRi~RiGQ~k--~V~VyrL 959 (1007)
. ++.+...|-.||++|--..- .|..+++
T Consensus 383 h~vfTesaLVQIaGRvGRs~~~PtGdv~FFH~ 414 (441)
T COG4098 383 HRVFTESALVQIAGRVGRSLERPTGDVLFFHY 414 (441)
T ss_pred cccccHHHHHHHhhhccCCCcCCCCcEEEEec
Confidence 3 88999999999999965433 3554444
No 125
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=98.61 E-value=6e-06 Score=101.44 Aligned_cols=130 Identities=12% Similarity=0.156 Sum_probs=99.1
Q ss_pred chhhHHHHHHHHHhhhhcccccchhhhhhcccCCCCCccccCCCCCCCCeEEEEecchhHHHHHHHHHhhcCCeEEEecC
Q 001840 805 ISSKIRTVLDILHTQCELNTKCSIVEIHDLAGSNGSSAVHSKSPIEGPIKSIVFSQWTRMLDLVENSLNQHCIQYRRLDG 884 (1007)
Q Consensus 805 ~SsKl~~l~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvIIFsq~~~~ld~L~~~L~~~gi~~~~i~G 884 (1007)
...|..++++.+.+.-+.+. -|||-+.+...-+.|...|.+.||++.+++.
T Consensus 550 ~~~k~~ai~~ei~~~~~~gr-----------------------------PvLigt~si~~se~ls~~L~~~gi~h~vLNa 600 (970)
T PRK12899 550 EREKYHAIVAEIASIHRKGN-----------------------------PILIGTESVEVSEKLSRILRQNRIEHTVLNA 600 (970)
T ss_pred HHHHHHHHHHHHHHHHhCCC-----------------------------CEEEEeCcHHHHHHHHHHHHHcCCcceeccc
Confidence 35799999999988877776 8999999999999999999999999999988
Q ss_pred CCChHHHHHHHHhhccCcccceeeeeccCccccccccc--------CCEEEEecCCCCCChhHHHhHhhhccCCcccEEE
Q 001840 885 TMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVA--------ASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTV 956 (1007)
Q Consensus 885 s~s~~~R~~~I~~F~~~~~~~VlLlStkagg~GLNL~~--------A~~VI~~Dp~WNp~~e~QaigRi~RiGQ~k~V~V 956 (1007)
... +.-.++|.+-- ..--+.++|..+|.|-++.- .=|||.-..+-|...+.|..||+.|.|..=....
T Consensus 601 k~~-~~Ea~iia~AG---~~g~VTIATNmAGRGTDIkl~~~v~~~GGLhVIgTer~es~Rid~Ql~GRagRQGdpGss~f 676 (970)
T PRK12899 601 KNH-AQEAEIIAGAG---KLGAVTVATNMAGRGTDIKLDEEAVAVGGLYVIGTSRHQSRRIDRQLRGRCARLGDPGAAKF 676 (970)
T ss_pred chh-hhHHHHHHhcC---CCCcEEEeeccccCCcccccCchHHhcCCcEEEeeccCchHHHHHHHhcccccCCCCCceeE
Confidence 743 22234454332 22334557799999977543 3489999999999999999999999998754333
Q ss_pred EEEEeCCCHHHHHHHH
Q 001840 957 TRLTIRDTVEDRILKL 972 (1007)
Q Consensus 957 yrLi~~~TIEe~I~~l 972 (1007)
|- |.|+.++.+
T Consensus 677 ~l-----SlEDdL~~~ 687 (970)
T PRK12899 677 FL-----SFEDRLMRL 687 (970)
T ss_pred EE-----EcchHHHHH
Confidence 22 456666544
No 126
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=98.57 E-value=6e-07 Score=112.00 Aligned_cols=103 Identities=17% Similarity=0.138 Sum_probs=94.8
Q ss_pred eEEEEecchhHHHHHHHHHhhcCCeEEEecCCCChHHHHHHHHhhccCcccceeeeeccCcccccccccCCEEEEecCCC
Q 001840 854 KSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDLWW 933 (1007)
Q Consensus 854 KvIIFsq~~~~ld~L~~~L~~~gi~~~~i~Gs~s~~~R~~~I~~F~~~~~~~VlLlStkagg~GLNL~~A~~VI~~Dp~W 933 (1007)
-.||||....+.+.+...|...|+....|+++++..+|+.+.+.|..+ +++|+++ |=|.|-|||-.+.--||||..|=
T Consensus 487 s~IIYC~sr~~ce~vs~~L~~~~~~a~~YHAGl~~~~R~~Vq~~w~~~-~~~VivA-TVAFGMGIdK~DVR~ViH~~lPk 564 (941)
T KOG0351|consen 487 SGIIYCLSRKECEQVSAVLRSLGKSAAFYHAGLPPKERETVQKAWMSD-KIRVIVA-TVAFGMGIDKPDVRFVIHYSLPK 564 (941)
T ss_pred CeEEEeCCcchHHHHHHHHHHhchhhHhhhcCCCHHHHHHHHHHHhcC-CCeEEEE-EeeccCCCCCCceeEEEECCCch
Confidence 679999999999999999999999999999999999999999999987 5777664 58999999999999999999999
Q ss_pred CCChhHHHhHhhhccCCcccEEEEE
Q 001840 934 NPTTEDQAVDRAHRIGQTRPVTVTR 958 (1007)
Q Consensus 934 Np~~e~QaigRi~RiGQ~k~V~Vyr 958 (1007)
+-.-+-|-+||++|-|+...++.|+
T Consensus 565 s~E~YYQE~GRAGRDG~~s~C~l~y 589 (941)
T KOG0351|consen 565 SFEGYYQEAGRAGRDGLPSSCVLLY 589 (941)
T ss_pred hHHHHHHhccccCcCCCcceeEEec
Confidence 9999999999999999997755544
No 127
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=98.54 E-value=5.4e-06 Score=101.74 Aligned_cols=119 Identities=13% Similarity=0.160 Sum_probs=94.7
Q ss_pred chhhHHHHHHHHHhhhhcccccchhhhhhcccCCCCCccccCCCCCCCCeEEEEecchhHHHHHHHHHhhcCCeEEEecC
Q 001840 805 ISSKIRTVLDILHTQCELNTKCSIVEIHDLAGSNGSSAVHSKSPIEGPIKSIVFSQWTRMLDLVENSLNQHCIQYRRLDG 884 (1007)
Q Consensus 805 ~SsKl~~l~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvIIFsq~~~~ld~L~~~L~~~gi~~~~i~G 884 (1007)
...|..++++.+.+..+.|. -|||-+.+....+.|...|.+.||++-+++.
T Consensus 431 ~~eK~~Ai~~ei~~~~~~Gr-----------------------------PVLVGT~SVe~SE~ls~~L~~~gi~h~VLNA 481 (913)
T PRK13103 431 AEEKYAAIITDIKECMALGR-----------------------------PVLVGTATIETSEHMSNLLKKEGIEHKVLNA 481 (913)
T ss_pred HHHHHHHHHHHHHHHHhCCC-----------------------------CEEEEeCCHHHHHHHHHHHHHcCCcHHHhcc
Confidence 46799999999999888877 8999999999999999999999999988888
Q ss_pred CCChHHHHHHHHhhccCcccceeeeeccCcccccccc-------------------------------------cCCEEE
Q 001840 885 TMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMV-------------------------------------AASHVI 927 (1007)
Q Consensus 885 s~s~~~R~~~I~~F~~~~~~~VlLlStkagg~GLNL~-------------------------------------~A~~VI 927 (1007)
... ++-.++|.+- + ..--+-++|..+|.|-++. ..=|||
T Consensus 482 k~~-~~EA~IIa~A--G-~~GaVTIATNMAGRGTDIkLg~n~~~~~~~~~~~~~~~~~~~~~~~~~~~e~V~e~GGLhVI 557 (913)
T PRK13103 482 KYH-EKEAEIIAQA--G-RPGALTIATNMAGRGTDILLGGNWEVEVAALENPTPEQIAQIKADWQKRHQQVIEAGGLHVI 557 (913)
T ss_pred ccc-hhHHHHHHcC--C-CCCcEEEeccCCCCCCCEecCCchHHHHHhhhhhhHHHHHHHHHHHHhHHHHHHHcCCCEEE
Confidence 744 3333444432 2 2233455779999997764 244899
Q ss_pred EecCCCCCChhHHHhHhhhccCCcccEEE
Q 001840 928 LLDLWWNPTTEDQAVDRAHRIGQTRPVTV 956 (1007)
Q Consensus 928 ~~Dp~WNp~~e~QaigRi~RiGQ~k~V~V 956 (1007)
.-+.+-|--.+.|..||++|.|..=....
T Consensus 558 gTerheSrRID~QLrGRaGRQGDPGsS~f 586 (913)
T PRK13103 558 ASERHESRRIDNQLRGRAGRQGDPGSSRF 586 (913)
T ss_pred eeccCchHHHHHHhccccccCCCCCceEE
Confidence 99999999999999999999998755443
No 128
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=98.53 E-value=1.2e-06 Score=96.67 Aligned_cols=114 Identities=21% Similarity=0.232 Sum_probs=100.1
Q ss_pred hhhHHHHHHHHHhhhhcccccchhhhhhcccCCCCCccccCCCCCCCCeEEEEecchhHHHHHHHHHhhcCCeEEEecCC
Q 001840 806 SSKIRTVLDILHTQCELNTKCSIVEIHDLAGSNGSSAVHSKSPIEGPIKSIVFSQWTRMLDLVENSLNQHCIQYRRLDGT 885 (1007)
Q Consensus 806 SsKl~~l~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvIIFsq~~~~ld~L~~~L~~~gi~~~~i~Gs 885 (1007)
..|..+|+.++.+...+ ...|||+.-...++++...|...|+....+.|+
T Consensus 245 a~K~aaLl~il~~~~~~------------------------------~~t~vf~~tk~hve~~~~ll~~~g~~~s~iyss 294 (529)
T KOG0337|consen 245 AEKEAALLSILGGRIKD------------------------------KQTIVFVATKHHVEYVRGLLRDFGGEGSDIYSS 294 (529)
T ss_pred HHHHHHHHHHHhccccc------------------------------cceeEEecccchHHHHHHHHHhcCCCccccccc
Confidence 56778888888776552 278999999999999999999999999999999
Q ss_pred CChHHHHHHHHhhccCcccceeeeeccCcccccccccCCEEEEecCCCCCChhHHHhHhhhccCCc
Q 001840 886 MSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQT 951 (1007)
Q Consensus 886 ~s~~~R~~~I~~F~~~~~~~VlLlStkagg~GLNL~~A~~VI~~Dp~WNp~~e~QaigRi~RiGQ~ 951 (1007)
+.+..|..-+.+|+.. ...+ |+.|+.++.|++...-+.||+||.|=.+.....|.||+.|-|.+
T Consensus 295 lD~~aRk~~~~~F~~~-k~~~-lvvTdvaaRG~diplldnvinyd~p~~~klFvhRVgr~aragrt 358 (529)
T KOG0337|consen 295 LDQEARKINGRDFRGR-KTSI-LVVTDVAARGLDIPLLDNVINYDFPPDDKLFVHRVGRVARAGRT 358 (529)
T ss_pred cChHhhhhccccccCC-ccce-EEEehhhhccCCCccccccccccCCCCCceEEEEecchhhcccc
Confidence 9999999999999964 3334 55669999999999999999999999999999999999999866
No 129
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=98.53 E-value=1.8e-06 Score=95.18 Aligned_cols=102 Identities=18% Similarity=0.119 Sum_probs=91.4
Q ss_pred eEEEEecchhHHHHHHHHHhhcCCeEEEecCCCChHHHHHHHHhhccCcccceeeeeccCcccccccccCCEEEEecCCC
Q 001840 854 KSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDLWW 933 (1007)
Q Consensus 854 KvIIFsq~~~~ld~L~~~L~~~gi~~~~i~Gs~s~~~R~~~I~~F~~~~~~~VlLlStkagg~GLNL~~A~~VI~~Dp~W 933 (1007)
=-||||.-....+.++..|..+||+...++.+....+|..+.+.|-++ ++.|+. .|-+.|.|++=....-|||.+++-
T Consensus 257 CGIVYCRTR~~cEq~AI~l~~~Gi~A~AYHAGLK~~ERTeVQe~WM~~-~~PvI~-AT~SFGMGVDKp~VRFViHW~~~q 334 (641)
T KOG0352|consen 257 CGIVYCRTRNECEQVAIMLEIAGIPAMAYHAGLKKKERTEVQEKWMNN-EIPVIA-ATVSFGMGVDKPDVRFVIHWSPSQ 334 (641)
T ss_pred ceEEEeccHHHHHHHHHHhhhcCcchHHHhcccccchhHHHHHHHhcC-CCCEEE-EEeccccccCCcceeEEEecCchh
Confidence 348999999999999999999999999999999999999999999976 566666 558899999999999999999999
Q ss_pred CCChhHHHhHhhhccCCcccEEEE
Q 001840 934 NPTTEDQAVDRAHRIGQTRPVTVT 957 (1007)
Q Consensus 934 Np~~e~QaigRi~RiGQ~k~V~Vy 957 (1007)
|-+.+-|--||++|-|-..=+..|
T Consensus 335 n~AgYYQESGRAGRDGk~SyCRLY 358 (641)
T KOG0352|consen 335 NLAGYYQESGRAGRDGKRSYCRLY 358 (641)
T ss_pred hhHHHHHhccccccCCCccceeee
Confidence 999999999999999977655554
No 130
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms]
Probab=98.49 E-value=8.7e-06 Score=95.59 Aligned_cols=83 Identities=23% Similarity=0.307 Sum_probs=59.3
Q ss_pred HhhccCcccceeeeeccCcccccccccCCEE--------EEecCCCCCChhHHHhHhhhccCCcccEEEEEEEeCCCHHH
Q 001840 896 KDFNTDREITVMLMSLKAGNLGLNMVAASHV--------ILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVED 967 (1007)
Q Consensus 896 ~~F~~~~~~~VlLlStkagg~GLNL~~A~~V--------I~~Dp~WNp~~e~QaigRi~RiGQ~k~V~VyrLi~~~TIEe 967 (1007)
++|-.+ +..|-|+| .|.+.||.||.-.+| |-+++||...+-+|-+||.||-.|-..-....||.+=-=|-
T Consensus 851 qrFM~G-eK~vAIIS-EAaSSGiSLQsDrRv~NqRRRvHiTLELPWSADrAIQQFGRTHRSNQVsaPEYvFlIseLAGEr 928 (1300)
T KOG1513|consen 851 QRFMDG-EKLVAIIS-EAASSGISLQSDRRVQNQRRRVHITLELPWSADRAIQQFGRTHRSNQVSAPEYVFLISELAGER 928 (1300)
T ss_pred hhhccc-cceeeeee-hhhccCceeecchhhhhhhheEEEEEECCcchhHHHHHhcccccccccCCCeEEEEehhhccch
Confidence 457654 56677878 889999999985443 56999999999999999999999987655444554434455
Q ss_pred HHHHHHHHHHHHH
Q 001840 968 RILKLQDDKRKMV 980 (1007)
Q Consensus 968 ~I~~lq~~K~~li 980 (1007)
|..-+..++.+-.
T Consensus 929 RFAS~VAKRLESL 941 (1300)
T KOG1513|consen 929 RFASIVAKRLESL 941 (1300)
T ss_pred HHHHHHHHHHHhh
Confidence 5544444444433
No 131
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=98.44 E-value=2.4e-05 Score=95.27 Aligned_cols=129 Identities=12% Similarity=0.133 Sum_probs=99.7
Q ss_pred chhhHHHHHHHHHhhhhcccccchhhhhhcccCCCCCccccCCCCCCCCeEEEEecchhHHHHHHHHHhhcCCeEEEecC
Q 001840 805 ISSKIRTVLDILHTQCELNTKCSIVEIHDLAGSNGSSAVHSKSPIEGPIKSIVFSQWTRMLDLVENSLNQHCIQYRRLDG 884 (1007)
Q Consensus 805 ~SsKl~~l~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvIIFsq~~~~ld~L~~~L~~~gi~~~~i~G 884 (1007)
...|+.++++.+.+..+.+. -|||.|......+.|...|.+.||++.+++.
T Consensus 408 ~~~K~~Aii~ei~~~~~~gq-----------------------------PVLVgT~SIe~SE~ls~~L~~~gi~h~vLNA 458 (925)
T PRK12903 408 KHAKWKAVVKEVKRVHKKGQ-----------------------------PILIGTAQVEDSETLHELLLEANIPHTVLNA 458 (925)
T ss_pred HHHHHHHHHHHHHHHHhcCC-----------------------------CEEEEeCcHHHHHHHHHHHHHCCCCceeecc
Confidence 46799999999988877776 8999999999999999999999999999998
Q ss_pred CCChHHHHHHHHhhccCcccceeeeeccCcccccccccCC--------EEEEecCCCCCChhHHHhHhhhccCCcccEEE
Q 001840 885 TMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAAS--------HVILLDLWWNPTTEDQAVDRAHRIGQTRPVTV 956 (1007)
Q Consensus 885 s~s~~~R~~~I~~F~~~~~~~VlLlStkagg~GLNL~~A~--------~VI~~Dp~WNp~~e~QaigRi~RiGQ~k~V~V 956 (1007)
... ++++.|-. +.+ ..--+.++|..+|.|-++.-.. |||..+.+-|-..+.|..||++|.|..=....
T Consensus 459 k~~--e~EA~IIa-~AG-~~GaVTIATNMAGRGTDI~Lg~~V~~~GGLhVIgTerheSrRIDnQLrGRaGRQGDpGss~f 534 (925)
T PRK12903 459 KQN--AREAEIIA-KAG-QKGAITIATNMAGRGTDIKLSKEVLELGGLYVLGTDKAESRRIDNQLRGRSGRQGDVGESRF 534 (925)
T ss_pred cch--hhHHHHHH-hCC-CCCeEEEecccccCCcCccCchhHHHcCCcEEEecccCchHHHHHHHhcccccCCCCCcceE
Confidence 743 44443332 323 3334456779999998876543 99999999999999999999999998755443
Q ss_pred EEEEeCCCHHHHHHH
Q 001840 957 TRLTIRDTVEDRILK 971 (1007)
Q Consensus 957 yrLi~~~TIEe~I~~ 971 (1007)
|- |+|+.++.
T Consensus 535 ~l-----SLeD~L~r 544 (925)
T PRK12903 535 FI-----SLDDQLFR 544 (925)
T ss_pred EE-----ecchHHHH
Confidence 32 34555544
No 132
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=98.42 E-value=0.00015 Score=83.04 Aligned_cols=137 Identities=19% Similarity=0.237 Sum_probs=110.2
Q ss_pred hhhHHHHHHHHHhhhhcccccchhhhhhcccCCCCCccccCCCCCCCCeEEEEecchhHHHHHHHHHhhcCCeEEEecCC
Q 001840 806 SSKIRTVLDILHTQCELNTKCSIVEIHDLAGSNGSSAVHSKSPIEGPIKSIVFSQWTRMLDLVENSLNQHCIQYRRLDGT 885 (1007)
Q Consensus 806 SsKl~~l~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvIIFsq~~~~ld~L~~~L~~~gi~~~~i~Gs 885 (1007)
..-++-|+..++...+.+. ++||-+--..|++-|.++|.+.||++..++..
T Consensus 429 ~~QvdDL~~EI~~r~~~~e-----------------------------RvLVTtLTKkmAEdLT~Yl~e~gikv~YlHSd 479 (663)
T COG0556 429 KGQVDDLLSEIRKRVAKNE-----------------------------RVLVTTLTKKMAEDLTEYLKELGIKVRYLHSD 479 (663)
T ss_pred CCcHHHHHHHHHHHHhcCC-----------------------------eEEEEeehHHHHHHHHHHHHhcCceEEeeecc
Confidence 3456777777777666655 99999999999999999999999999999999
Q ss_pred CChHHHHHHHHhhccCcccceeeeeccCcccccccccCCEEEEecCC-----CCCChhHHHhHhhhccCCcccEEEEEEE
Q 001840 886 MSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDLW-----WNPTTEDQAVDRAHRIGQTRPVTVTRLT 960 (1007)
Q Consensus 886 ~s~~~R~~~I~~F~~~~~~~VlLlStkagg~GLNL~~A~~VI~~Dp~-----WNp~~e~QaigRi~RiGQ~k~V~VyrLi 960 (1007)
...-+|.++|.+.+.+ ...||+ ....+-+||+|..++-|.++|-. -+.....|-|||+-|--.- .|..|-=.
T Consensus 480 idTlER~eIirdLR~G-~~DvLV-GINLLREGLDiPEVsLVAIlDADKeGFLRse~SLIQtIGRAARN~~G-kvIlYAD~ 556 (663)
T COG0556 480 IDTLERVEIIRDLRLG-EFDVLV-GINLLREGLDLPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNG-KVILYADK 556 (663)
T ss_pred chHHHHHHHHHHHhcC-CccEEE-eehhhhccCCCcceeEEEEeecCccccccccchHHHHHHHHhhccCC-eEEEEchh
Confidence 9999999999999965 566665 57899999999999999999977 5777899999999994322 24444444
Q ss_pred eCCCHHHHHHHHHH
Q 001840 961 IRDTVEDRILKLQD 974 (1007)
Q Consensus 961 ~~~TIEe~I~~lq~ 974 (1007)
+.++++..|-+-.+
T Consensus 557 iT~sM~~Ai~ET~R 570 (663)
T COG0556 557 ITDSMQKAIDETER 570 (663)
T ss_pred hhHHHHHHHHHHHH
Confidence 55566666655444
No 133
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=98.42 E-value=1.1e-05 Score=100.29 Aligned_cols=60 Identities=15% Similarity=0.085 Sum_probs=39.8
Q ss_pred CEEEEecCCCCCChhHHHhHhhhccCCcccEEEEEEEeCCCHHHHHHHHHHHHH-HHHHHhhcC
Q 001840 924 SHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVEDRILKLQDDKR-KMVASAFGE 986 (1007)
Q Consensus 924 ~~VI~~Dp~WNp~~e~QaigRi~RiGQ~k~V~VyrLi~~~TIEe~I~~lq~~K~-~li~~~~g~ 986 (1007)
++||+|||.-...+..|. -|+.|-|. ++.||.|+..||+||.-|....+|. +++..++.+
T Consensus 478 ~~VImYEP~~sfIR~IEv-yra~r~~r--~~rVyfL~y~~S~EEq~yl~sirrEK~AFe~LIre 538 (814)
T TIGR00596 478 RYVIMYEPDISFIRQLEV-YKASRPLR--PLRVYFLYYGGSIEEQRYLTSLRREKDAFTKLIRE 538 (814)
T ss_pred CEEEEECCChHHHHHHHH-HHccCCCC--CcEEEEEEECCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999997555555551 23344443 4899999999999998765544443 345544443
No 134
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=98.35 E-value=1.1e-06 Score=96.35 Aligned_cols=106 Identities=19% Similarity=0.316 Sum_probs=94.7
Q ss_pred eEEEEecchhHHHHHHHHHhhcCCeEEEecCCCChHHHHHHHHhhccCcccceeeeeccCcccccccccCCEEEEecCCC
Q 001840 854 KSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDLWW 933 (1007)
Q Consensus 854 KvIIFsq~~~~ld~L~~~L~~~gi~~~~i~Gs~s~~~R~~~I~~F~~~~~~~VlLlStkagg~GLNL~~A~~VI~~Dp~W 933 (1007)
..+||++..+-++.|...|..+++....++|.|.+.+|..+.++|+.+ ..+||+ ++...+.|++++..+-||+||+|-
T Consensus 265 q~~if~nt~r~v~~l~~~L~~~~~~~s~~~~d~~q~~R~~~~~ef~~g-ssrvlI-ttdl~argidv~~~slvinydlP~ 342 (397)
T KOG0327|consen 265 QAVIFCNTRRKVDNLTDKLRAHGFTVSAIHGDMEQNERDTLMREFRSG-SSRVLI-TTDLLARGIDVQQVSLVVNYDLPA 342 (397)
T ss_pred cceEEecchhhHHHHHHHHhhCCceEEEeecccchhhhhHHHHHhhcC-CceEEe-eccccccccchhhcceeeeecccc
Confidence 779999999999999999999999999999999999999999999976 556666 669999999999999999999999
Q ss_pred CCChhHHHhHhhhccCCcccEEEEEEEeCC
Q 001840 934 NPTTEDQAVDRAHRIGQTRPVTVTRLTIRD 963 (1007)
Q Consensus 934 Np~~e~QaigRi~RiGQ~k~V~VyrLi~~~ 963 (1007)
|...+..++||..|+|.+ -.+..++++.
T Consensus 343 ~~~~yihR~gr~gr~grk--g~~in~v~~~ 370 (397)
T KOG0327|consen 343 RKENYIHRIGRAGRFGRK--GVAINFVTEE 370 (397)
T ss_pred chhhhhhhcccccccCCC--ceeeeeehHh
Confidence 999999999999999965 3334555554
No 135
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=98.33 E-value=7.2e-05 Score=91.33 Aligned_cols=96 Identities=18% Similarity=0.219 Sum_probs=68.8
Q ss_pred HHHHHHHhhc--CCeEEEecCCCChHH--HHHHHHhhccCcccceeeeeccCcccccccccCCEEEEecCC---CCCC--
Q 001840 866 DLVENSLNQH--CIQYRRLDGTMSLPA--RDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDLW---WNPT-- 936 (1007)
Q Consensus 866 d~L~~~L~~~--gi~~~~i~Gs~s~~~--R~~~I~~F~~~~~~~VlLlStkagg~GLNL~~A~~VI~~Dp~---WNp~-- 936 (1007)
+.+++.|.+. +.++.++|++++..+ -+.+++.|.++ ++.||| -|.....|+|+....-|.++|.+ .+|.
T Consensus 494 erieeeL~~~FP~~rv~r~d~Dtt~~k~~~~~~l~~~~~g-e~dILi-GTQmiaKG~~fp~vtLVgvl~aD~~L~~~DfR 571 (730)
T COG1198 494 ERIEEELKRLFPGARIIRIDSDTTRRKGALEDLLDQFANG-EADILI-GTQMIAKGHDFPNVTLVGVLDADTGLGSPDFR 571 (730)
T ss_pred HHHHHHHHHHCCCCcEEEEccccccchhhHHHHHHHHhCC-CCCeee-cchhhhcCCCcccceEEEEEechhhhcCCCcc
Confidence 3444555544 677889999876543 45789999976 666666 55999999999998888777655 2332
Q ss_pred -------hhHHHhHhhhccCCcccEEEEEEEeCC
Q 001840 937 -------TEDQAVDRAHRIGQTRPVTVTRLTIRD 963 (1007)
Q Consensus 937 -------~e~QaigRi~RiGQ~k~V~VyrLi~~~ 963 (1007)
.+.|..||++|-+-.-.|.|-.+....
T Consensus 572 A~Er~fqll~QvaGRAgR~~~~G~VvIQT~~P~h 605 (730)
T COG1198 572 ASERTFQLLMQVAGRAGRAGKPGEVVIQTYNPDH 605 (730)
T ss_pred hHHHHHHHHHHHHhhhccCCCCCeEEEEeCCCCc
Confidence 566999999998766667666665554
No 136
>PF13871 Helicase_C_4: Helicase_C-like
Probab=98.23 E-value=1.9e-06 Score=93.40 Aligned_cols=93 Identities=23% Similarity=0.269 Sum_probs=76.8
Q ss_pred HHHHhhccCcccceeeeeccCcccccccccC----C---E-EEEecCCCCCChhHHHhHhhhccCCcccEEEEEEEeCCC
Q 001840 893 RAVKDFNTDREITVMLMSLKAGNLGLNMVAA----S---H-VILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDT 964 (1007)
Q Consensus 893 ~~I~~F~~~~~~~VlLlStkagg~GLNL~~A----~---~-VI~~Dp~WNp~~e~QaigRi~RiGQ~k~V~VyrLi~~~T 964 (1007)
...+.|+++ +..|+|+| +|||+|++||+- | + .|.++++|+.....|-+||+||-||..+..+..+++.-.
T Consensus 52 ~e~~~F~~g-~k~v~iis-~AgstGiSlHAd~~~~nqr~Rv~i~le~pwsad~aiQ~~GR~hRsnQ~~~P~y~~l~t~~~ 129 (278)
T PF13871_consen 52 AEKQAFMDG-EKDVAIIS-DAGSTGISLHADRRVKNQRRRVHITLELPWSADKAIQQFGRTHRSNQVSAPEYRFLVTDLP 129 (278)
T ss_pred HHHHHHhCC-CceEEEEe-cccccccchhccccCCCCCceEEEEeeCCCCHHHHHHHhccccccccccCCEEEEeecCCH
Confidence 456789977 67888988 999999999962 2 2 478999999999999999999999998765555666668
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCC
Q 001840 965 VEDRILKLQDDKRKMVASAFGED 987 (1007)
Q Consensus 965 IEe~I~~lq~~K~~li~~~~g~~ 987 (1007)
.|.|......+|.+-..+...++
T Consensus 130 gE~Rfas~va~rL~sLgAlt~gd 152 (278)
T PF13871_consen 130 GERRFASTVARRLESLGALTRGD 152 (278)
T ss_pred HHHHHHHHHHHHHhhccccccCc
Confidence 89999999999988777776554
No 137
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=98.23 E-value=2.5e-05 Score=96.31 Aligned_cols=71 Identities=23% Similarity=0.294 Sum_probs=56.0
Q ss_pred CeEEEecCCCChHHHHHHHHhhccCcccceeeeeccCcccccccccCCEEE----EecCC---C---CCChhHHHhHhhh
Q 001840 877 IQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVI----LLDLW---W---NPTTEDQAVDRAH 946 (1007)
Q Consensus 877 i~~~~i~Gs~s~~~R~~~I~~F~~~~~~~VlLlStkagg~GLNL~~A~~VI----~~Dp~---W---Np~~e~QaigRi~ 946 (1007)
+.+..=+.+|+..+|+..-+-|.++ .++|++ ||...+-|+||.+=..+| .|||. | .|-...|..||++
T Consensus 608 ygfaIHhAGl~R~dR~~~EdLf~~g-~iqvlv-statlawgvnlpahtViikgtqvy~pekg~w~elsp~dv~qmlgrag 685 (1674)
T KOG0951|consen 608 YGFAIHHAGLNRKDRELVEDLFADG-HIQVLV-STATLAWGVNLPAHTVIIKGTQVYDPEKGRWTELSPLDVMQMLGRAG 685 (1674)
T ss_pred ccceeeccCCCcchHHHHHHHHhcC-ceeEEE-eehhhhhhcCCCcceEEecCccccCcccCccccCCHHHHHHHHhhcC
Confidence 4566778899999999888889854 777877 789999999998654444 36665 4 3567889999999
Q ss_pred ccC
Q 001840 947 RIG 949 (1007)
Q Consensus 947 RiG 949 (1007)
|.+
T Consensus 686 rp~ 688 (1674)
T KOG0951|consen 686 RPQ 688 (1674)
T ss_pred CCc
Confidence 976
No 138
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=98.22 E-value=3.5e-05 Score=83.68 Aligned_cols=104 Identities=17% Similarity=0.142 Sum_probs=89.6
Q ss_pred eEEEEecchhHHHHHHHHHhhcCCeEEEecCCCChHHHHHHHHhhccCcccceeeeeccCcccccccccCCEEEEecCCC
Q 001840 854 KSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDLWW 933 (1007)
Q Consensus 854 KvIIFsq~~~~ld~L~~~L~~~gi~~~~i~Gs~s~~~R~~~I~~F~~~~~~~VlLlStkagg~GLNL~~A~~VI~~Dp~W 933 (1007)
.-||||-...-.+.+...|+.+||....++..+.+++|.-+-+.|-.+ ++.|++.+ -+.|.|++-.....||+-.++-
T Consensus 319 sgiiyc~sq~d~ekva~alkn~gi~a~~yha~lep~dks~~hq~w~a~-eiqvivat-vafgmgidkpdvrfvihhsl~k 396 (695)
T KOG0353|consen 319 SGIIYCFSQKDCEKVAKALKNHGIHAGAYHANLEPEDKSGAHQGWIAG-EIQVIVAT-VAFGMGIDKPDVRFVIHHSLPK 396 (695)
T ss_pred cceEEEeccccHHHHHHHHHhcCccccccccccCcccccccccccccc-ceEEEEEE-eeecccCCCCCeeEEEecccch
Confidence 558888888889999999999999999999999999998888888755 88888855 7899999999999999999998
Q ss_pred CCChhHH-------------------------------------------HhHhhhccCCcccEEEEEE
Q 001840 934 NPTTEDQ-------------------------------------------AVDRAHRIGQTRPVTVTRL 959 (1007)
Q Consensus 934 Np~~e~Q-------------------------------------------aigRi~RiGQ~k~V~VyrL 959 (1007)
.-..+-| --||++|-||+-.+..|+=
T Consensus 397 sienyyqasarillrmtkqknksdtggstqinilevctnfkiffavfsekesgragrd~~~a~cilyy~ 465 (695)
T KOG0353|consen 397 SIENYYQASARILLRMTKQKNKSDTGGSTQINILEVCTNFKIFFAVFSEKESGRAGRDDMKADCILYYG 465 (695)
T ss_pred hHHHHHHHHHHHHHHHhhhcccccCCCcceeehhhhhccceeeeeeecchhccccccCCCcccEEEEec
Confidence 8777788 4688999999988666653
No 139
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=98.11 E-value=6.8e-05 Score=91.48 Aligned_cols=73 Identities=15% Similarity=0.259 Sum_probs=60.6
Q ss_pred eEEEEecc---hhHHHHHHHHHhhcCCeEEEecCCCChHHHHHHHHhhccCcccceeeeecc---Cccccccccc-CCEE
Q 001840 854 KSIVFSQW---TRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLK---AGNLGLNMVA-ASHV 926 (1007)
Q Consensus 854 KvIIFsq~---~~~ld~L~~~L~~~gi~~~~i~Gs~s~~~R~~~I~~F~~~~~~~VlLlStk---agg~GLNL~~-A~~V 926 (1007)
-.|||.+- .+.++.|++.|+.+|+.+..++.. ..+.++.|..+ ++.||+.... +.-.||+|.. ..++
T Consensus 337 GgLIfV~~d~G~e~aeel~e~Lr~~Gi~a~~~~a~-----~~~~le~F~~G-eidvLVGvAsyYG~lVRGlDLP~rirYa 410 (1187)
T COG1110 337 GGLIFVPIDYGREKAEELAEYLRSHGINAELIHAE-----KEEALEDFEEG-EVDVLVGVASYYGVLVRGLDLPHRIRYA 410 (1187)
T ss_pred CeEEEEEcHHhHHHHHHHHHHHHhcCceEEEeecc-----chhhhhhhccC-ceeEEEEecccccceeecCCchhheeEE
Confidence 55999998 899999999999999999887653 36789999976 8888886643 3457999997 7889
Q ss_pred EEecCC
Q 001840 927 ILLDLW 932 (1007)
Q Consensus 927 I~~Dp~ 932 (1007)
|||..|
T Consensus 411 IF~GvP 416 (1187)
T COG1110 411 VFYGVP 416 (1187)
T ss_pred EEecCC
Confidence 999998
No 140
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]
Probab=98.00 E-value=0.00056 Score=82.87 Aligned_cols=99 Identities=17% Similarity=0.228 Sum_probs=68.8
Q ss_pred cccCchHHHHHHHHHHHhhhcCCCccCceeecCCCCchHHHHHHHHHhhccccccchhhhccccccccccCCCCCCCCCc
Q 001840 272 SVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLDDDDDNGNA 351 (1007)
Q Consensus 272 ~~~LrpyQ~~~v~wml~~e~~~~~~~GGILADdmGLGKTiqaIali~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (1007)
..+|=++|++|+.-|.+-+ ..+.|--+-.|||+.|=..|+....+
T Consensus 295 pFelD~FQk~Ai~~lerg~-------SVFVAAHTSAGKTvVAEYAialaq~h---------------------------- 339 (1248)
T KOG0947|consen 295 PFELDTFQKEAIYHLERGD-------SVFVAAHTSAGKTVVAEYAIALAQKH---------------------------- 339 (1248)
T ss_pred CCCccHHHHHHHHHHHcCC-------eEEEEecCCCCcchHHHHHHHHHHhh----------------------------
Confidence 4578889999998876332 25899999999999987666542211
Q ss_pred CcccccccCCCCCCCCCCcccccccccCCCCCCCceEEEcC-hhhHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCcccc
Q 001840 352 GLDKVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCP-ASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVEL 430 (1007)
Q Consensus 352 ~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tLIV~P-~sLl~QW~~Ei~k~~~~~~~l~vlv~~g~~r~~~~~~l 430 (1007)
..+++--.| +.|-.|=.++|+..|+. .. +..|... --
T Consensus 340 --------------------------------~TR~iYTSPIKALSNQKfRDFk~tF~D---vg--LlTGDvq-----in 377 (1248)
T KOG0947|consen 340 --------------------------------MTRTIYTSPIKALSNQKFRDFKETFGD---VG--LLTGDVQ-----IN 377 (1248)
T ss_pred --------------------------------ccceEecchhhhhccchHHHHHHhccc---cc--eeeccee-----eC
Confidence 123566677 44567888999988873 22 5555432 23
Q ss_pred CCCcEEEechhhhhccC
Q 001840 431 AKYDVVLTTYSIVTNEV 447 (1007)
Q Consensus 431 ~~~dVVItSy~~l~~~~ 447 (1007)
.++.++|+|.++|++-+
T Consensus 378 PeAsCLIMTTEILRsML 394 (1248)
T KOG0947|consen 378 PEASCLIMTTEILRSML 394 (1248)
T ss_pred CCcceEeehHHHHHHHH
Confidence 56789999999999854
No 141
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.97 E-value=3.2e-06 Score=86.99 Aligned_cols=57 Identities=33% Similarity=0.751 Sum_probs=47.2
Q ss_pred cccccccccCCCCCCccccccCcccchhhhhhhccCCCCCCCCcchhhcccccceec
Q 001840 716 TSSAICCVCSDPPEDSVVTMCGHVFCYQCASEYITGDDNMCPAPRCKEQLGADVVFS 772 (1007)
Q Consensus 716 ~~~~~C~~c~d~~~~~v~t~CgH~~c~~ci~~~~~~~~~~cp~~~cr~~l~~~~~~~ 772 (1007)
.+...|.||+|..++||+|.|||.||-.|+.+|+....+.--||.|+..+..+.+.+
T Consensus 45 ~~~FdCNICLd~akdPVvTlCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~~~vvP 101 (230)
T KOG0823|consen 45 GGFFDCNICLDLAKDPVVTLCGHLFCWPCLYQWLQTRPNSKECPVCKAEVSIDTVVP 101 (230)
T ss_pred CCceeeeeeccccCCCEEeecccceehHHHHHHHhhcCCCeeCCccccccccceEEe
Confidence 466789999999999999999999999999999876544333357998888887754
No 142
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=97.94 E-value=3.2e-05 Score=75.17 Aligned_cols=52 Identities=15% Similarity=0.295 Sum_probs=29.5
Q ss_pred CceEEEcChhhHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCccccCCCcEEEechhhhhc
Q 001840 385 AGTLVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVELAKYDVVLTTYSIVTN 445 (1007)
Q Consensus 385 ~~tLIV~P~sLl~QW~~Ei~k~~~~~~~l~vlv~~g~~r~~~~~~l~~~dVVItSy~~l~~ 445 (1007)
.++||+.|.-++. +|+.+.+. .+. +-++-..... ......-|-+++|.++..
T Consensus 34 ~rvLvL~PTRvva---~em~~aL~---~~~-~~~~t~~~~~--~~~g~~~i~vMc~at~~~ 85 (148)
T PF07652_consen 34 LRVLVLAPTRVVA---EEMYEALK---GLP-VRFHTNARMR--THFGSSIIDVMCHATYGH 85 (148)
T ss_dssp --EEEEESSHHHH---HHHHHHTT---TSS-EEEESTTSS------SSSSEEEEEHHHHHH
T ss_pred CeEEEecccHHHH---HHHHHHHh---cCC-cccCceeeec--cccCCCcccccccHHHHH
Confidence 4599999998774 56666655 233 2233322221 234556688899998765
No 143
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=97.84 E-value=0.0014 Score=80.84 Aligned_cols=83 Identities=11% Similarity=0.077 Sum_probs=63.1
Q ss_pred chhhHHHHHHHHHhhhhcccccchhhhhhcccCCCCCccccCCCCCCCCeEEEEecchhHHHHHHHHHhhcCCeEEEecC
Q 001840 805 ISSKIRTVLDILHTQCELNTKCSIVEIHDLAGSNGSSAVHSKSPIEGPIKSIVFSQWTRMLDLVENSLNQHCIQYRRLDG 884 (1007)
Q Consensus 805 ~SsKl~~l~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvIIFsq~~~~ld~L~~~L~~~gi~~~~i~G 884 (1007)
...|..++++.+.+..+.+. -|||-+.....-+.|...|.+.|+++.+++.
T Consensus 406 ~~~K~~AI~~ei~~~~~~gr-----------------------------PVLIgT~SIe~SE~ls~~L~~~gi~h~vLNA 456 (870)
T CHL00122 406 ELSKWRAIADECLQMHQTGR-----------------------------PILIGTTTIEKSELLSQLLKEYRLPHQLLNA 456 (870)
T ss_pred HHHHHHHHHHHHHHHHhcCC-----------------------------CEEEeeCCHHHHHHHHHHHHHcCCccceeeC
Confidence 45699999998888877776 8999999999999999999999999999998
Q ss_pred CC-ChHHHHHHHHhhccCcccceeeeeccCcccccc
Q 001840 885 TM-SLPARDRAVKDFNTDREITVMLMSLKAGNLGLN 919 (1007)
Q Consensus 885 s~-s~~~R~~~I~~F~~~~~~~VlLlStkagg~GLN 919 (1007)
.. ..+.-.++|.+-- ..--+-++|..+|.|-+
T Consensus 457 k~~~~~~EA~IIA~AG---~~G~VTIATNMAGRGTD 489 (870)
T CHL00122 457 KPENVRRESEIVAQAG---RKGSITIATNMAGRGTD 489 (870)
T ss_pred CCccchhHHHHHHhcC---CCCcEEEeccccCCCcC
Confidence 74 3344445665532 22334556788888844
No 144
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=97.83 E-value=5.2e-05 Score=84.49 Aligned_cols=107 Identities=18% Similarity=0.170 Sum_probs=90.4
Q ss_pred eEEEEecchhHHHHHHHHHhhcCCeEEEecCCCChHHHHHHHHhhccCcccceeeeec----------------------
Q 001840 854 KSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSL---------------------- 911 (1007)
Q Consensus 854 KvIIFsq~~~~ld~L~~~L~~~gi~~~~i~Gs~s~~~R~~~I~~F~~~~~~~VlLlSt---------------------- 911 (1007)
|+|||.+-.+..-.|.-.|++-||+.+.++|.++...|.-+|++||.+ -..+++.|-
T Consensus 270 KsliFVNtIdr~YrLkLfLeqFGiksciLNseLP~NSR~Hii~QFNkG-~YdivIAtD~s~~~~~~eee~kgk~~e~~~k 348 (569)
T KOG0346|consen 270 KSLIFVNTIDRCYRLKLFLEQFGIKSCILNSELPANSRCHIIEQFNKG-LYDIVIATDDSADGDKLEEEVKGKSDEKNPK 348 (569)
T ss_pred ceEEEEechhhhHHHHHHHHHhCcHhhhhcccccccchhhHHHHhhCc-ceeEEEEccCccchhhhhccccccccccCCC
Confidence 999999999999999999999999999999999999999999999965 555555553
Q ss_pred --c-C---------cccccccccCCEEEEecCCCCCChhHHHhHhhhccCCcccEEEEEEEeCC
Q 001840 912 --K-A---------GNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRD 963 (1007)
Q Consensus 912 --k-a---------gg~GLNL~~A~~VI~~Dp~WNp~~e~QaigRi~RiGQ~k~V~VyrLi~~~ 963 (1007)
+ + .+.||+++..+.||+||.|-++..+..|+||..|-|.+-.+ .-|+...
T Consensus 349 ndkkskkK~D~E~GVsRGIDF~~V~~VlNFD~P~t~~sYIHRvGRTaRg~n~Gta--lSfv~P~ 410 (569)
T KOG0346|consen 349 NDKKSKKKLDKESGVSRGIDFHHVSNVLNFDFPETVTSYIHRVGRTARGNNKGTA--LSFVSPK 410 (569)
T ss_pred CccccccccCchhchhccccchheeeeeecCCCCchHHHHHhccccccCCCCCce--EEEecch
Confidence 0 1 24799999999999999999999999999999998766443 3345443
No 145
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=97.80 E-value=5.4e-05 Score=83.72 Aligned_cols=94 Identities=20% Similarity=0.247 Sum_probs=83.7
Q ss_pred CeEEEEecchhHHHHHHHHHhhcC---CeEEEecCCCChHHHHHHHHhhccCcccceeeeeccCcccccccccCCEEEEe
Q 001840 853 IKSIVFSQWTRMLDLVENSLNQHC---IQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILL 929 (1007)
Q Consensus 853 ~KvIIFsq~~~~ld~L~~~L~~~g---i~~~~i~Gs~s~~~R~~~I~~F~~~~~~~VlLlStkagg~GLNL~~A~~VI~~ 929 (1007)
+|.||||.-..-.|-|++++.+.| +..+.++|...+.+|.+-++.|... +++. |+.|++++.||+++..-.||++
T Consensus 506 dkaiifcrtk~dcDnLer~~~qkgg~~~scvclhgDrkP~Erk~nle~Fkk~-dvkf-lictdvaargldi~g~p~~inv 583 (725)
T KOG0349|consen 506 DKAIIFCRTKQDCDNLERMMNQKGGKHYSCVCLHGDRKPDERKANLESFKKF-DVKF-LICTDVAARGLDITGLPFMINV 583 (725)
T ss_pred CceEEEEeccccchHHHHHHHHcCCccceeEEEecCCChhHHHHHHHhhhhc-CeEE-EEEehhhhccccccCCceEEEE
Confidence 499999999999999999999884 6778899999999999999999965 4544 5566999999999999999999
Q ss_pred cCCCCCChhHHHhHhhhcc
Q 001840 930 DLWWNPTTEDQAVDRAHRI 948 (1007)
Q Consensus 930 Dp~WNp~~e~QaigRi~Ri 948 (1007)
.+|-....+..||||++|-
T Consensus 584 tlpd~k~nyvhrigrvgra 602 (725)
T KOG0349|consen 584 TLPDDKTNYVHRIGRVGRA 602 (725)
T ss_pred ecCcccchhhhhhhccchh
Confidence 9999999999999988873
No 146
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=97.76 E-value=0.0043 Score=77.38 Aligned_cols=118 Identities=14% Similarity=0.138 Sum_probs=94.2
Q ss_pred chhhHHHHHHHHHhhhhcccccchhhhhhcccCCCCCccccCCCCCCCCeEEEEecchhHHHHHHHHHhhcCCeEEEecC
Q 001840 805 ISSKIRTVLDILHTQCELNTKCSIVEIHDLAGSNGSSAVHSKSPIEGPIKSIVFSQWTRMLDLVENSLNQHCIQYRRLDG 884 (1007)
Q Consensus 805 ~SsKl~~l~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvIIFsq~~~~ld~L~~~L~~~gi~~~~i~G 884 (1007)
...|..++++.+.+..+.|. -|||-+.+...-+.|...|...||++-+++.
T Consensus 610 ~~eK~~Aii~ei~~~~~~Gr-----------------------------PVLVGT~SVe~SE~lS~~L~~~gI~H~VLNA 660 (1112)
T PRK12901 610 KREKYNAVIEEITELSEAGR-----------------------------PVLVGTTSVEISELLSRMLKMRKIPHNVLNA 660 (1112)
T ss_pred HHHHHHHHHHHHHHHHHCCC-----------------------------CEEEEeCcHHHHHHHHHHHHHcCCcHHHhhc
Confidence 46899999999999888877 8999999999999999999999999999988
Q ss_pred CCChHHHHHHHHhhccCcccceeeeeccCcccccccc--------cCCEEEEecCCCCCChhHHHhHhhhccCCcccEE
Q 001840 885 TMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMV--------AASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVT 955 (1007)
Q Consensus 885 s~s~~~R~~~I~~F~~~~~~~VlLlStkagg~GLNL~--------~A~~VI~~Dp~WNp~~e~QaigRi~RiGQ~k~V~ 955 (1007)
... ++-.++|.+--. .-.+-++|.-+|.|-+.. ..=|||.-+.+-+...+.|..||++|.|..=...
T Consensus 661 K~h-~~EAeIVA~AG~---~GaVTIATNMAGRGTDIkLg~~V~e~GGL~VIgTerheSrRID~QLrGRaGRQGDPGsS~ 735 (1112)
T PRK12901 661 KLH-QKEAEIVAEAGQ---PGTVTIATNMAGRGTDIKLSPEVKAAGGLAIIGTERHESRRVDRQLRGRAGRQGDPGSSQ 735 (1112)
T ss_pred cch-hhHHHHHHhcCC---CCcEEEeccCcCCCcCcccchhhHHcCCCEEEEccCCCcHHHHHHHhcccccCCCCCcce
Confidence 754 222344443322 223355779999998765 3568999999999999999999999999875433
No 147
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=97.69 E-value=0.0059 Score=74.57 Aligned_cols=95 Identities=16% Similarity=0.213 Sum_probs=70.6
Q ss_pred eEEEEecchhHHHHHHHHHhhcCCeEEEecCCCChHHHHHHHHhhccCcccceeeeeccCccccccccc--CCEEEEe--
Q 001840 854 KSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVA--ASHVILL-- 929 (1007)
Q Consensus 854 KvIIFsq~~~~ld~L~~~L~~~gi~~~~i~Gs~s~~~R~~~I~~F~~~~~~~VlLlStkagg~GLNL~~--A~~VI~~-- 929 (1007)
+|-|||....+.+++++.....+..+..+++..+..+ ++.+. +.+|++-+ .+..+|+++-. .+.|+.|
T Consensus 284 nIcvfsSt~~~~~~v~~~~~~~~~~Vl~l~s~~~~~d----v~~W~---~~~VviYT-~~itvG~Sf~~~HF~~~f~yvk 355 (824)
T PF02399_consen 284 NICVFSSTVSFAEIVARFCARFTKKVLVLNSTDKLED----VESWK---KYDVVIYT-PVITVGLSFEEKHFDSMFAYVK 355 (824)
T ss_pred cEEEEeChHHHHHHHHHHHHhcCCeEEEEcCCCCccc----ccccc---ceeEEEEe-ceEEEEeccchhhceEEEEEec
Confidence 9999999999999999999999999999988776552 33343 66777766 77889999875 5556666
Q ss_pred cCCCCCCh--hHHHhHhhhccCCcccEEEE
Q 001840 930 DLWWNPTT--EDQAVDRAHRIGQTRPVTVT 957 (1007)
Q Consensus 930 Dp~WNp~~--e~QaigRi~RiGQ~k~V~Vy 957 (1007)
....-|.. ..|.+||+..+... ++.||
T Consensus 356 ~~~~gpd~~s~~Q~lgRvR~l~~~-ei~v~ 384 (824)
T PF02399_consen 356 PMSYGPDMVSVYQMLGRVRSLLDN-EIYVY 384 (824)
T ss_pred CCCCCCcHHHHHHHHHHHHhhccC-eEEEE
Confidence 22234554 58999999998754 34444
No 148
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=97.69 E-value=2.1e-05 Score=79.76 Aligned_cols=55 Identities=29% Similarity=0.728 Sum_probs=43.4
Q ss_pred ccccccccCCCCCCccccccCcccchhhhhhhccC-------------CCCCCCCcchhhccccccee
Q 001840 717 SSAICCVCSDPPEDSVVTMCGHVFCYQCASEYITG-------------DDNMCPAPRCKEQLGADVVF 771 (1007)
Q Consensus 717 ~~~~C~~c~d~~~~~v~t~CgH~~c~~ci~~~~~~-------------~~~~cp~~~cr~~l~~~~~~ 771 (1007)
...+|+||.+...+|+++.|||.||..|+..|+.. ......||.|+..+....++
T Consensus 17 ~~~~CpICld~~~dPVvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~~Lv 84 (193)
T PLN03208 17 GDFDCNICLDQVRDPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEATLV 84 (193)
T ss_pred CccCCccCCCcCCCcEEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChhcEE
Confidence 45789999999999999999999999999988642 11233455899998776554
No 149
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=97.65 E-value=0.0053 Score=77.29 Aligned_cols=77 Identities=22% Similarity=0.265 Sum_probs=57.0
Q ss_pred EecCCCChHHHHHHHHhhccCcccceeeeeccCcccccccccCCEEE----Eec----CCCCCChhHHHhHhhhccCCcc
Q 001840 881 RLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVI----LLD----LWWNPTTEDQAVDRAHRIGQTR 952 (1007)
Q Consensus 881 ~i~Gs~s~~~R~~~I~~F~~~~~~~VlLlStkagg~GLNL~~A~~VI----~~D----p~WNp~~e~QaigRi~RiGQ~k 952 (1007)
.=++++=+.-|..+-.-|+.+ -++|++ .|.+.+.|+|+..=+.|+ .+| -|-+|..+.|--||++|-|+..
T Consensus 449 vHH~GlLP~~K~~vE~Lfq~G-LvkvvF-aTeT~s~GiNmPartvv~~~l~K~dG~~~r~L~~gEy~QmsGRAGRRGlD~ 526 (1041)
T COG4581 449 VHHAGLLPAIKELVEELFQEG-LVKVVF-ATETFAIGINMPARTVVFTSLSKFDGNGHRWLSPGEYTQMSGRAGRRGLDV 526 (1041)
T ss_pred hhccccchHHHHHHHHHHhcc-ceeEEe-ehhhhhhhcCCcccceeeeeeEEecCCceeecChhHHHHhhhhhccccccc
Confidence 346777778888888889865 666766 569999999998755443 222 2457889999999999999997
Q ss_pred cEEEEEE
Q 001840 953 PVTVTRL 959 (1007)
Q Consensus 953 ~V~VyrL 959 (1007)
.-+|...
T Consensus 527 ~G~vI~~ 533 (1041)
T COG4581 527 LGTVIVI 533 (1041)
T ss_pred cceEEEe
Confidence 6444444
No 150
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=97.58 E-value=0.0068 Score=74.82 Aligned_cols=82 Identities=12% Similarity=0.075 Sum_probs=61.2
Q ss_pred chhhHHHHHHHHHhhhhcccccchhhhhhcccCCCCCccccCCCCCCCCeEEEEecchhHHHHHHHHHhhcCCeEEEecC
Q 001840 805 ISSKIRTVLDILHTQCELNTKCSIVEIHDLAGSNGSSAVHSKSPIEGPIKSIVFSQWTRMLDLVENSLNQHCIQYRRLDG 884 (1007)
Q Consensus 805 ~SsKl~~l~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvIIFsq~~~~ld~L~~~L~~~gi~~~~i~G 884 (1007)
...|..++++.+.+..+.|. -|||-+.....-+.|...|.+.|+++.+++.
T Consensus 421 ~~~K~~Ai~~ei~~~~~~Gr-----------------------------PVLIgT~SVe~SE~ls~~L~~~gi~h~vLNA 471 (939)
T PRK12902 421 EIAKWRAVANETAEMHKQGR-----------------------------PVLVGTTSVEKSELLSALLQEQGIPHNLLNA 471 (939)
T ss_pred HHHHHHHHHHHHHHHHhCCC-----------------------------CEEEeeCCHHHHHHHHHHHHHcCCchheeeC
Confidence 36899999999988877776 8999999999999999999999999999998
Q ss_pred C-CChHHHHHHHHhhccCcccceeeeeccCccccc
Q 001840 885 T-MSLPARDRAVKDFNTDREITVMLMSLKAGNLGL 918 (1007)
Q Consensus 885 s-~s~~~R~~~I~~F~~~~~~~VlLlStkagg~GL 918 (1007)
. ...++-.++|.+--. .--+-++|..+|.|-
T Consensus 472 k~~~~~~EA~IIa~AG~---~GaVTIATNMAGRGT 503 (939)
T PRK12902 472 KPENVEREAEIVAQAGR---KGAVTIATNMAGRGT 503 (939)
T ss_pred CCcchHhHHHHHHhcCC---CCcEEEeccCCCCCc
Confidence 7 333444455654322 222234556666663
No 151
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=97.54 E-value=0.00061 Score=85.15 Aligned_cols=37 Identities=16% Similarity=0.174 Sum_probs=30.5
Q ss_pred EEEEccCcccCCcccHHHHHHHhcccCcEEEEeccCCC
Q 001840 514 RVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQ 551 (1007)
Q Consensus 514 rVIlDEAH~iKN~~s~~~kal~~L~a~~r~lLTGTPi~ 551 (1007)
.||+||+|++... .+.+.++..+.....+.-|||--.
T Consensus 204 ivIiDEPh~~~~~-~k~~~~i~~lnpl~~lrysAT~~~ 240 (986)
T PRK15483 204 VVIIDEPHRFPRD-NKFYQAIEALKPQMIIRFGATFPD 240 (986)
T ss_pred EEEEECCCCCCcc-hHHHHHHHhcCcccEEEEeeecCC
Confidence 5999999999653 346688899999999999999744
No 152
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=97.45 E-value=0.00035 Score=80.22 Aligned_cols=108 Identities=24% Similarity=0.284 Sum_probs=82.7
Q ss_pred CCeEEEEecchhHHHHHHHHHhhcCCe-EEEecCCCChHHHHHHHHhhccC-cccceeeeeccCcccccccccCCEEEEe
Q 001840 852 PIKSIVFSQWTRMLDLVENSLNQHCIQ-YRRLDGTMSLPARDRAVKDFNTD-REITVMLMSLKAGNLGLNMVAASHVILL 929 (1007)
Q Consensus 852 ~~KvIIFsq~~~~ld~L~~~L~~~gi~-~~~i~Gs~s~~~R~~~I~~F~~~-~~~~VlLlStkagg~GLNL~~A~~VI~~ 929 (1007)
++=++-||.- -+-.+...++++|.. .++|.|+.+++.|.+.-..||+. +++.||+.| +|.|.||||- ..+|||+
T Consensus 358 GDCvV~FSkk--~I~~~k~kIE~~g~~k~aVIYGsLPPeTr~aQA~~FNd~~~e~dvlVAs-DAIGMGLNL~-IrRiiF~ 433 (700)
T KOG0953|consen 358 GDCVVAFSKK--DIFTVKKKIEKAGNHKCAVIYGSLPPETRLAQAALFNDPSNECDVLVAS-DAIGMGLNLN-IRRIIFY 433 (700)
T ss_pred CCeEEEeehh--hHHHHHHHHHHhcCcceEEEecCCCCchhHHHHHHhCCCCCccceEEee-cccccccccc-eeEEEEe
Confidence 3467777753 444566777888776 99999999999999999999973 477888866 9999999995 6889999
Q ss_pred cCC-CC--------CChhHHHhHhhhccCCccc-EEEEEEEeCC
Q 001840 930 DLW-WN--------PTTEDQAVDRAHRIGQTRP-VTVTRLTIRD 963 (1007)
Q Consensus 930 Dp~-WN--------p~~e~QaigRi~RiGQ~k~-V~VyrLi~~~ 963 (1007)
++- +| -....|-.||++|.|..-+ =.|..|-.+|
T Consensus 434 sl~Kysg~e~~~it~sqikQIAGRAGRf~s~~~~G~vTtl~~eD 477 (700)
T KOG0953|consen 434 SLIKYSGRETEDITVSQIKQIAGRAGRFGSKYPQGEVTTLHSED 477 (700)
T ss_pred ecccCCcccceeccHHHHHHHhhcccccccCCcCceEEEeeHhh
Confidence 876 22 3356699999999987744 5555555544
No 153
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=97.45 E-value=4.5e-05 Score=64.16 Aligned_cols=50 Identities=12% Similarity=0.279 Sum_probs=40.9
Q ss_pred ccccccCCCCCCccccccCcccchhhhhhhccCCCCCCCCcchhhccccccee
Q 001840 719 AICCVCSDPPEDSVVTMCGHVFCYQCASEYITGDDNMCPAPRCKEQLGADVVF 771 (1007)
Q Consensus 719 ~~C~~c~d~~~~~v~t~CgH~~c~~ci~~~~~~~~~~cp~~~cr~~l~~~~~~ 771 (1007)
..|++|.+.+.+|+++.|||+||..|+.+++.. ...|| .|+..+..+.++
T Consensus 2 ~~Cpi~~~~~~~Pv~~~~G~v~~~~~i~~~~~~-~~~cP--~~~~~~~~~~l~ 51 (63)
T smart00504 2 FLCPISLEVMKDPVILPSGQTYERRAIEKWLLS-HGTDP--VTGQPLTHEDLI 51 (63)
T ss_pred cCCcCCCCcCCCCEECCCCCEEeHHHHHHHHHH-CCCCC--CCcCCCChhhce
Confidence 369999999999999999999999999999876 55777 466666554443
No 154
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.44 E-value=6.8e-05 Score=85.41 Aligned_cols=54 Identities=30% Similarity=0.761 Sum_probs=46.1
Q ss_pred cccccccCCCCCCccccccCcccchhhhhhhccCC--CCCCCCcchhhccccccee
Q 001840 718 SAICCVCSDPPEDSVVTMCGHVFCYQCASEYITGD--DNMCPAPRCKEQLGADVVF 771 (1007)
Q Consensus 718 ~~~C~~c~d~~~~~v~t~CgH~~c~~ci~~~~~~~--~~~cp~~~cr~~l~~~~~~ 771 (1007)
+..|+||+.++..|+.|.|||+||..|+-+|+... ...|-||.|+..+....+.
T Consensus 186 ~~~CPICL~~~~~p~~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~kdl~ 241 (513)
T KOG2164|consen 186 DMQCPICLEPPSVPVRTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITLKDLL 241 (513)
T ss_pred CCcCCcccCCCCcccccccCceeeHHHHHHHHhhhcccCCccCCchhhhcccccee
Confidence 78899999999999999999999999999998644 5567788999988775443
No 155
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=97.43 E-value=5.6e-05 Score=57.07 Aligned_cols=37 Identities=43% Similarity=1.053 Sum_probs=31.5
Q ss_pred ccccCCCCCCc-cccccCcccchhhhhhhccCCCCCCCC
Q 001840 721 CCVCSDPPEDS-VVTMCGHVFCYQCASEYITGDDNMCPA 758 (1007)
Q Consensus 721 C~~c~d~~~~~-v~t~CgH~~c~~ci~~~~~~~~~~cp~ 758 (1007)
|++|.+.+.+| +++.|||+||.+|+.+++.. +..||.
T Consensus 1 C~iC~~~~~~~~~~~~CGH~fC~~C~~~~~~~-~~~CP~ 38 (39)
T PF13923_consen 1 CPICLDELRDPVVVTPCGHSFCKECIEKYLEK-NPKCPV 38 (39)
T ss_dssp ETTTTSB-SSEEEECTTSEEEEHHHHHHHHHC-TSB-TT
T ss_pred CCCCCCcccCcCEECCCCCchhHHHHHHHHHC-cCCCcC
Confidence 78999999999 79999999999999999887 678873
No 156
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=97.41 E-value=0.00044 Score=88.50 Aligned_cols=69 Identities=13% Similarity=0.173 Sum_probs=45.9
Q ss_pred HHHHHHHhh-ccCcccceeeeeccCcccccccccCCEEEEecCCCCCChhHHHhHhhhccCCc-cc-EEEEEEE
Q 001840 890 ARDRAVKDF-NTDREITVMLMSLKAGNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQT-RP-VTVTRLT 960 (1007)
Q Consensus 890 ~R~~~I~~F-~~~~~~~VlLlStkagg~GLNL~~A~~VI~~Dp~WNp~~e~QaigRi~RiGQ~-k~-V~VyrLi 960 (1007)
.+...+.+| ..+..++++|+. +-.=+|-+-+..++++ +|-+--.....||+.|+.|+=-. |+ -.|..|+
T Consensus 579 ~~~~~~~r~~~~~d~~kilIV~-dmlLTGFDaP~L~TmY-vDK~Lk~H~L~QAisRtNR~~~~~K~~G~IVDf~ 650 (962)
T COG0610 579 EKKDLIKRFKLKDDPLDLLIVV-DMLLTGFDAPCLNTLY-VDKPLKYHNLIQAISRTNRVFPGKKKFGLIVDFR 650 (962)
T ss_pred HHhhhhhhhcCcCCCCCEEEEE-ccccccCCccccceEE-eccccccchHHHHHHHhccCCCCCCCCcEEEECc
Confidence 344555554 555677787777 5555777777666654 56667788889999999997444 33 4444444
No 157
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=97.39 E-value=7.9e-05 Score=57.13 Aligned_cols=33 Identities=33% Similarity=0.734 Sum_probs=28.3
Q ss_pred ccccCCCCCCccccccCcccchhhhhhhccCCC
Q 001840 721 CCVCSDPPEDSVVTMCGHVFCYQCASEYITGDD 753 (1007)
Q Consensus 721 C~~c~d~~~~~v~t~CgH~~c~~ci~~~~~~~~ 753 (1007)
|++|++...+|+...|||.||..|+..++....
T Consensus 1 CpiC~~~~~~Pv~l~CGH~FC~~Cl~~~~~~~~ 33 (42)
T PF15227_consen 1 CPICLDLFKDPVSLPCGHSFCRSCLERLWKEPS 33 (42)
T ss_dssp ETTTTSB-SSEEE-SSSSEEEHHHHHHHHCCSS
T ss_pred CCccchhhCCccccCCcCHHHHHHHHHHHHccC
Confidence 889999999999999999999999999987543
No 158
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=97.37 E-value=0.0019 Score=67.33 Aligned_cols=44 Identities=23% Similarity=0.213 Sum_probs=41.7
Q ss_pred eeeccCcccccccccCCEEEEecCCCCCChhHHHhHhhhccCCc
Q 001840 908 LMSLKAGNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQT 951 (1007)
Q Consensus 908 LlStkagg~GLNL~~A~~VI~~Dp~WNp~~e~QaigRi~RiGQ~ 951 (1007)
++++...|.|++....|.||+||.|-.+..+..+.+|++|.|-+
T Consensus 302 ~vat~lfgrgmdiervNi~~NYdmp~~~DtYlHrv~rAgrfGtk 345 (387)
T KOG0329|consen 302 LVATDLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTK 345 (387)
T ss_pred hHHhhhhccccCcccceeeeccCCCCCchHHHHHhhhhhccccc
Confidence 66889999999999999999999999999999999999999965
No 159
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=97.31 E-value=0.027 Score=69.06 Aligned_cols=69 Identities=22% Similarity=0.228 Sum_probs=56.5
Q ss_pred ecCCCChHHHHHHHHhhccCcccceeeeeccCcccccccccCCEEEEecC-CCCCChhHHHhHhhhccCCcc
Q 001840 882 LDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDL-WWNPTTEDQAVDRAHRIGQTR 952 (1007)
Q Consensus 882 i~Gs~s~~~R~~~I~~F~~~~~~~VlLlStkagg~GLNL~~A~~VI~~Dp-~WNp~~e~QaigRi~RiGQ~k 952 (1007)
-+.++....|..+---|+.+ ...|++ +|...+.|+|+..-..|+.-|. ..||-.+.|+.||++|-|=..
T Consensus 968 HHaglNr~yR~~VEvLFR~g-~L~Vlf-aT~TLsLGiNMPCrTVvF~gDsLQL~plny~QmaGRAGRRGFD~ 1037 (1330)
T KOG0949|consen 968 HHAGLNRKYRSLVEVLFRQG-HLQVLF-ATETLSLGINMPCRTVVFAGDSLQLDPLNYKQMAGRAGRRGFDT 1037 (1330)
T ss_pred cccccchHHHHHHHHHhhcC-ceEEEE-EeeehhcccCCCceeEEEeccccccCchhHHhhhcccccccccc
Confidence 35677888888877779866 666666 7799999999998888888764 489999999999999988543
No 160
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.23 E-value=0.00016 Score=76.86 Aligned_cols=51 Identities=29% Similarity=0.864 Sum_probs=42.9
Q ss_pred ccccccccCCCCCCccccccCcccchhhhhhhccCCCCCCCCcchhhcccccce
Q 001840 717 SSAICCVCSDPPEDSVVTMCGHVFCYQCASEYITGDDNMCPAPRCKEQLGADVV 770 (1007)
Q Consensus 717 ~~~~C~~c~d~~~~~v~t~CgH~~c~~ci~~~~~~~~~~cp~~~cr~~l~~~~~ 770 (1007)
....|.+|++...+|--|+|||+||-.||.+|...... || .||.......+
T Consensus 238 a~~kC~LCLe~~~~pSaTpCGHiFCWsCI~~w~~ek~e-CP--lCR~~~~pskv 288 (293)
T KOG0317|consen 238 ATRKCSLCLENRSNPSATPCGHIFCWSCILEWCSEKAE-CP--LCREKFQPSKV 288 (293)
T ss_pred CCCceEEEecCCCCCCcCcCcchHHHHHHHHHHccccC-CC--cccccCCCcce
Confidence 45689999999999999999999999999999765444 66 79988776654
No 161
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=97.23 E-value=0.035 Score=66.05 Aligned_cols=110 Identities=19% Similarity=0.222 Sum_probs=75.0
Q ss_pred eEEEEecchhHHHHHHHHHhhc------CC--eEEEecCCCChHHHHHHHHhhccCc-ccceeeeeccCcccccccccCC
Q 001840 854 KSIVFSQWTRMLDLVENSLNQH------CI--QYRRLDGTMSLPARDRAVKDFNTDR-EITVMLMSLKAGNLGLNMVAAS 924 (1007)
Q Consensus 854 KvIIFsq~~~~ld~L~~~L~~~------gi--~~~~i~Gs~s~~~R~~~I~~F~~~~-~~~VlLlStkagg~GLNL~~A~ 924 (1007)
-+|||=.-.+-++.+.+.|.+. +. -+.-++|+++.++..+ -|...+ +.+-+++||..+-+.|......
T Consensus 260 DILvFLtGqeEIe~~~~~l~e~~~~~~~~~~~~~lply~aL~~e~Q~r---vF~p~p~g~RKvIlsTNIAETSlTI~GI~ 336 (674)
T KOG0922|consen 260 DILVFLTGQEEIEAACELLRERAKSLPEDCPELILPLYGALPSEEQSR---VFDPAPPGKRKVILSTNIAETSLTIDGIR 336 (674)
T ss_pred CEEEEeCCHHHHHHHHHHHHHHhhhccccCcceeeeecccCCHHHhhc---cccCCCCCcceEEEEcceeeeeEEecceE
Confidence 4566655555555555544433 11 2456889999877544 466543 6777788999999999988877
Q ss_pred EEEE----ecCCCCC-----------ChhHHHhHhhhccCCcccEEEEEEEeCCCHH
Q 001840 925 HVIL----LDLWWNP-----------TTEDQAVDRAHRIGQTRPVTVTRLTIRDTVE 966 (1007)
Q Consensus 925 ~VI~----~Dp~WNp-----------~~e~QaigRi~RiGQ~k~V~VyrLi~~~TIE 966 (1007)
+||= ---.||| ....||.-|++|-|.+.+...|||+++.-.|
T Consensus 337 YVVDsG~vK~~~y~p~~g~~~L~v~~ISkasA~QRaGRAGRt~pGkcyRLYte~~~~ 393 (674)
T KOG0922|consen 337 YVVDSGFVKQKKYNPRTGLDSLIVVPISKASANQRAGRAGRTGPGKCYRLYTESAYD 393 (674)
T ss_pred EEEcCCceEEEeeccccCccceeEEechHHHHhhhcccCCCCCCceEEEeeeHHHHh
Confidence 7751 1112444 3566888888888889999999999988663
No 162
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=97.21 E-value=8.7e-05 Score=88.72 Aligned_cols=51 Identities=37% Similarity=0.854 Sum_probs=44.4
Q ss_pred cccccccCCCCCCccccccCcccchhhhhhhccCCCCCCCCcchhhcccccce
Q 001840 718 SAICCVCSDPPEDSVVTMCGHVFCYQCASEYITGDDNMCPAPRCKEQLGADVV 770 (1007)
Q Consensus 718 ~~~C~~c~d~~~~~v~t~CgH~~c~~ci~~~~~~~~~~cp~~~cr~~l~~~~~ 770 (1007)
...|++|++.+-+.|++.|+|+||++|+..........|| .|....+.+++
T Consensus 643 ~LkCs~Cn~R~Kd~vI~kC~H~FC~~Cvq~r~etRqRKCP--~Cn~aFganDv 693 (698)
T KOG0978|consen 643 LLKCSVCNTRWKDAVITKCGHVFCEECVQTRYETRQRKCP--KCNAAFGANDV 693 (698)
T ss_pred ceeCCCccCchhhHHHHhcchHHHHHHHHHHHHHhcCCCC--CCCCCCCcccc
Confidence 3469999999999999999999999999999888889999 67776666654
No 163
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=97.19 E-value=0.03 Score=70.03 Aligned_cols=107 Identities=20% Similarity=0.199 Sum_probs=74.2
Q ss_pred eEEEEecchhHHHHHHHHHhh----cCCeEEEecCCCChHHHHHHHHhhccCccc-ceeeeeccCcccccccccCCEEE-
Q 001840 854 KSIVFSQWTRMLDLVENSLNQ----HCIQYRRLDGTMSLPARDRAVKDFNTDREI-TVMLMSLKAGNLGLNMVAASHVI- 927 (1007)
Q Consensus 854 KvIIFsq~~~~ld~L~~~L~~----~gi~~~~i~Gs~s~~~R~~~I~~F~~~~~~-~VlLlStkagg~GLNL~~A~~VI- 927 (1007)
-+|||-.-..-++.+.+.|.+ ..+.++-++|.++.++..+ -|+..+.- +-+|+||..+-++|+.....+||
T Consensus 261 dILvFLpG~~EI~~~~~~L~~~~l~~~~~i~PLy~~L~~~eQ~r---vF~p~~~~~RKVVlATNIAETSLTI~gIr~VID 337 (845)
T COG1643 261 SILVFLPGQREIERTAEWLEKAELGDDLEILPLYGALSAEEQVR---VFEPAPGGKRKVVLATNIAETSLTIPGIRYVID 337 (845)
T ss_pred CEEEECCcHHHHHHHHHHHHhccccCCcEEeeccccCCHHHHHh---hcCCCCCCcceEEEEccccccceeeCCeEEEec
Confidence 678887777777777777776 3477888999999888766 46654333 44677999999999999988887
Q ss_pred -------EecCC----------CCCChhHHHhHhhhccCCcccEEEEEEEeCCCHH
Q 001840 928 -------LLDLW----------WNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVE 966 (1007)
Q Consensus 928 -------~~Dp~----------WNp~~e~QaigRi~RiGQ~k~V~VyrLi~~~TIE 966 (1007)
.||+- -.-+.-.||-||++ .+.+=..|||+.++..+
T Consensus 338 sG~ak~~~y~~~~g~~~L~~~~ISqAsA~QRaGRAG---R~~pGicyRLyse~~~~ 390 (845)
T COG1643 338 SGLAKEKRYDPRTGLTRLETEPISKASADQRAGRAG---RTGPGICYRLYSEEDFL 390 (845)
T ss_pred CCcccccccccccCceeeeEEEechhhhhhhccccc---cCCCceEEEecCHHHHH
Confidence 23322 22234445555555 46677889999886554
No 164
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.19 E-value=0.00013 Score=71.99 Aligned_cols=49 Identities=35% Similarity=0.843 Sum_probs=36.3
Q ss_pred ccccccccCCCCC--CccccccCcccchhhhhhhccCCCCCCCCcchhhccccc
Q 001840 717 SSAICCVCSDPPE--DSVVTMCGHVFCYQCASEYITGDDNMCPAPRCKEQLGAD 768 (1007)
Q Consensus 717 ~~~~C~~c~d~~~--~~v~t~CgH~~c~~ci~~~~~~~~~~cp~~~cr~~l~~~ 768 (1007)
....|++|++... .++.|.|||+||.+|+.+.+.. ...|| .|+..|...
T Consensus 130 ~~~~CPiCl~~~sek~~vsTkCGHvFC~~Cik~alk~-~~~CP--~C~kkIt~k 180 (187)
T KOG0320|consen 130 GTYKCPICLDSVSEKVPVSTKCGHVFCSQCIKDALKN-TNKCP--TCRKKITHK 180 (187)
T ss_pred cccCCCceecchhhccccccccchhHHHHHHHHHHHh-CCCCC--Ccccccchh
Confidence 3467999998765 4677999999999999987753 34666 555555443
No 165
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]
Probab=97.15 E-value=0.011 Score=70.34 Aligned_cols=68 Identities=26% Similarity=0.320 Sum_probs=44.2
Q ss_pred hccCcccceeeeeccCcccccccccCCEEEEec--------CCCCCChhHHHhHhhhccCCcccEEEEEEEeCCCHHHH
Q 001840 898 FNTDREITVMLMSLKAGNLGLNMVAASHVILLD--------LWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVEDR 968 (1007)
Q Consensus 898 F~~~~~~~VlLlStkagg~GLNL~~A~~VI~~D--------p~WNp~~e~QaigRi~RiGQ~k~V~VyrLi~~~TIEe~ 968 (1007)
|+.+ =++||+ .|...+-|||+.+-..|+--- -|-.-..+.|--||++|-|-...=.|. +++...+|..
T Consensus 468 FqEG-LvKvLF-ATETFsiGLNMPAkTVvFT~~rKfDG~~fRwissGEYIQMSGRAGRRG~DdrGivI-lmiDekm~~~ 543 (1041)
T KOG0948|consen 468 FQEG-LVKVLF-ATETFSIGLNMPAKTVVFTAVRKFDGKKFRWISSGEYIQMSGRAGRRGIDDRGIVI-LMIDEKMEPQ 543 (1041)
T ss_pred Hhcc-HHHHHH-hhhhhhhccCCcceeEEEeeccccCCcceeeecccceEEecccccccCCCCCceEE-EEecCcCCHH
Confidence 5543 455555 569999999999766665422 234567889999999999976543333 3333344443
No 166
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=97.05 E-value=0.0035 Score=80.24 Aligned_cols=97 Identities=23% Similarity=0.278 Sum_probs=71.1
Q ss_pred eEEEEecchhHHHHHHHHHhh----cCCeEEEecCCCChHHHHHHHHhhccCcccceeeeeccCcccccccccCC--EEE
Q 001840 854 KSIVFSQWTRMLDLVENSLNQ----HCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAAS--HVI 927 (1007)
Q Consensus 854 KvIIFsq~~~~ld~L~~~L~~----~gi~~~~i~Gs~s~~~R~~~I~~F~~~~~~~VlLlStkagg~GLNL~~A~--~VI 927 (1007)
++|||.....+++.+...|.. .++.. +..... ..|.+++++|+++ +..||| .+.+..+|+++..-. .||
T Consensus 676 ~~LVlftS~~~l~~v~~~L~~~~~~~~~~~--l~q~~~-~~r~~ll~~F~~~-~~~iLl-gt~sf~EGVD~~g~~l~~vi 750 (850)
T TIGR01407 676 KILVLFTSYEMLHMVYDMLNELPEFEGYEV--LAQGIN-GSRAKIKKRFNNG-EKAILL-GTSSFWEGVDFPGNGLVCLV 750 (850)
T ss_pred CEEEEeCCHHHHHHHHHHHhhhccccCceE--EecCCC-ccHHHHHHHHHhC-CCeEEE-EcceeecccccCCCceEEEE
Confidence 899999999999999999875 24443 223222 5789999999974 344555 569999999999844 567
Q ss_pred EecCCCC-CC-----------------------------hhHHHhHhhhccCCcccEE
Q 001840 928 LLDLWWN-PT-----------------------------TEDQAVDRAHRIGQTRPVT 955 (1007)
Q Consensus 928 ~~Dp~WN-p~-----------------------------~e~QaigRi~RiGQ~k~V~ 955 (1007)
+.-+|+- |. ...|++||+.|-.+.+-|.
T Consensus 751 I~~LPf~~p~dp~~~a~~~~~~~~g~~~f~~~~lP~A~~~l~Qa~GRlIRs~~D~G~v 808 (850)
T TIGR01407 751 IPRLPFANPKHPLTKKYWQKLEQEGKNPFYDYVLPMAIIRLRQALGRLIRRENDRGSI 808 (850)
T ss_pred EeCCCCCCCCCHHHHHHHHHHHHhcCCchHHhhHHHHHHHHHHhhccccccCCceEEE
Confidence 7776652 22 3459999999988877653
No 167
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=96.83 E-value=0.056 Score=66.74 Aligned_cols=112 Identities=17% Similarity=0.172 Sum_probs=85.2
Q ss_pred chhhHHHHHHHHHhhhhcccccchhhhhhcccCCCCCccccCCCCCCCCeEEEEecchhHHHHHHHHHhhcCCeEEEecC
Q 001840 805 ISSKIRTVLDILHTQCELNTKCSIVEIHDLAGSNGSSAVHSKSPIEGPIKSIVFSQWTRMLDLVENSLNQHCIQYRRLDG 884 (1007)
Q Consensus 805 ~SsKl~~l~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvIIFsq~~~~ld~L~~~L~~~gi~~~~i~G 884 (1007)
...|+.++++.+.+....+. .|||-+.....-+.+...|.+.||+..+++.
T Consensus 411 ~~~K~~Aiv~~I~~~~~~gq-----------------------------PvLvgT~sie~SE~ls~~L~~~~i~h~VLNA 461 (822)
T COG0653 411 EEEKFKAIVEDIKERHEKGQ-----------------------------PVLVGTVSIEKSELLSKLLRKAGIPHNVLNA 461 (822)
T ss_pred hHHHHHHHHHHHHHHHhcCC-----------------------------CEEEcCcceecchhHHHHHHhcCCCceeecc
Confidence 46799999999999888877 9999999999999999999999999999988
Q ss_pred CCChHHHHHHHHhhccCcccceeeeeccCcccccccccCC-----------EEEEecCCCCCChhHHHhHhhhccC
Q 001840 885 TMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAAS-----------HVILLDLWWNPTTEDQAVDRAHRIG 949 (1007)
Q Consensus 885 s~s~~~R~~~I~~F~~~~~~~VlLlStkagg~GLNL~~A~-----------~VI~~Dp~WNp~~e~QaigRi~RiG 949 (1007)
.-. .|+.-|-.+.-. ...| -++|.-+|.|-++.-.. +||=-+..=+-....|--||++|.|
T Consensus 462 k~h--~~EA~Iia~AG~-~gaV-TiATNMAGRGTDIkLg~~~~~V~~lGGL~VIgTERhESRRIDnQLRGRsGRQG 533 (822)
T COG0653 462 KNH--AREAEIIAQAGQ-PGAV-TIATNMAGRGTDIKLGGNPEFVMELGGLHVIGTERHESRRIDNQLRGRAGRQG 533 (822)
T ss_pred ccH--HHHHHHHhhcCC-CCcc-ccccccccCCcccccCCCHHHHHHhCCcEEEecccchhhHHHHHhhcccccCC
Confidence 765 455555444421 2223 44778888998877533 4555555545555569999999999
No 168
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]
Probab=96.82 E-value=0.028 Score=69.13 Aligned_cols=70 Identities=21% Similarity=0.236 Sum_probs=49.5
Q ss_pred eEEEecCCCChHHHHHHHHhhccCcccceeeeeccCcccccccccCCEEEEecCCC-----CCChhHHHhHhhhccCC
Q 001840 878 QYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDLWW-----NPTTEDQAVDRAHRIGQ 950 (1007)
Q Consensus 878 ~~~~i~Gs~s~~~R~~~I~~F~~~~~~~VlLlStkagg~GLNL~~A~~VI~~Dp~W-----Np~~e~QaigRi~RiGQ 950 (1007)
.+...+.+.+.++|.-+=..|+++ .++|++.+ ...+-|+||.+ .+||+=-|.. .-..+.|.+||++|.|=
T Consensus 524 GvAyHhaGLT~eER~~iE~afr~g-~i~vl~aT-STlaaGVNLPA-rRVIiraP~~g~~~l~~~~YkQM~GRAGR~gi 598 (1008)
T KOG0950|consen 524 GVAYHHAGLTSEEREIIEAAFREG-NIFVLVAT-STLAAGVNLPA-RRVIIRAPYVGREFLTRLEYKQMVGRAGRTGI 598 (1008)
T ss_pred cceecccccccchHHHHHHHHHhc-CeEEEEec-chhhccCcCCc-ceeEEeCCccccchhhhhhHHhhhhhhhhccc
Confidence 345566677788987766688865 56666644 66889999985 5555544442 34578899999999983
No 169
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.81 E-value=0.00043 Score=78.81 Aligned_cols=49 Identities=29% Similarity=0.704 Sum_probs=40.7
Q ss_pred ccccccccCCCCCCccccccCcccchhhhhhhccCCCCCCCCcchhhccccc
Q 001840 717 SSAICCVCSDPPEDSVVTMCGHVFCYQCASEYITGDDNMCPAPRCKEQLGAD 768 (1007)
Q Consensus 717 ~~~~C~~c~d~~~~~v~t~CgH~~c~~ci~~~~~~~~~~cp~~~cr~~l~~~ 768 (1007)
....|++|.+....|+++.|||.||..|+..++... ..|| .|+..+...
T Consensus 25 ~~l~C~IC~d~~~~PvitpCgH~FCs~CI~~~l~~~-~~CP--~Cr~~~~~~ 73 (397)
T TIGR00599 25 TSLRCHICKDFFDVPVLTSCSHTFCSLCIRRCLSNQ-PKCP--LCRAEDQES 73 (397)
T ss_pred cccCCCcCchhhhCccCCCCCCchhHHHHHHHHhCC-CCCC--CCCCccccc
Confidence 456899999999999999999999999999998753 3676 688766544
No 170
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=96.78 E-value=0.00063 Score=51.87 Aligned_cols=37 Identities=38% Similarity=1.016 Sum_probs=32.6
Q ss_pred ccccCCCCCCcc-ccccCcccchhhhhhhcc-CCCCCCC
Q 001840 721 CCVCSDPPEDSV-VTMCGHVFCYQCASEYIT-GDDNMCP 757 (1007)
Q Consensus 721 C~~c~d~~~~~v-~t~CgH~~c~~ci~~~~~-~~~~~cp 757 (1007)
|++|.+....++ ++.|||.||..|+.+++. .....||
T Consensus 1 C~iC~~~~~~~~~~~~C~H~fC~~C~~~~~~~~~~~~CP 39 (41)
T PF00097_consen 1 CPICLEPFEDPVILLPCGHSFCRDCLRKWLENSGSVKCP 39 (41)
T ss_dssp ETTTSSBCSSEEEETTTSEEEEHHHHHHHHHHTSSSBTT
T ss_pred CCcCCccccCCCEEecCCCcchHHHHHHHHHhcCCccCC
Confidence 789999999998 999999999999999987 5555676
No 171
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=96.69 E-value=0.009 Score=66.54 Aligned_cols=43 Identities=26% Similarity=0.234 Sum_probs=31.0
Q ss_pred ccCchHHHHHHHHHHHhhhcCCCccCceeecCCCCchHHHHHHHHH
Q 001840 273 VNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQ 318 (1007)
Q Consensus 273 ~~LrpyQ~~~v~wml~~e~~~~~~~GGILADdmGLGKTiqaIali~ 318 (1007)
++.||.|++-..-+.+....+ .-+|+--.+|.|||+..|..++
T Consensus 7 y~~r~~Q~~~m~~v~~~~~~~---~~~~~eapTGtGKTl~~L~~al 49 (289)
T smart00488 7 YEPYPIQYEFMEELKRVLDRG---KIGILESPTGTGKTLSLLCLTL 49 (289)
T ss_pred CCCCHHHHHHHHHHHHHHHcC---CcEEEECCCCcchhHHHHHHHH
Confidence 346999999666665544432 2367888999999998887764
No 172
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=96.69 E-value=0.009 Score=66.54 Aligned_cols=43 Identities=26% Similarity=0.234 Sum_probs=31.0
Q ss_pred ccCchHHHHHHHHHHHhhhcCCCccCceeecCCCCchHHHHHHHHH
Q 001840 273 VNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQ 318 (1007)
Q Consensus 273 ~~LrpyQ~~~v~wml~~e~~~~~~~GGILADdmGLGKTiqaIali~ 318 (1007)
++.||.|++-..-+.+....+ .-+|+--.+|.|||+..|..++
T Consensus 7 y~~r~~Q~~~m~~v~~~~~~~---~~~~~eapTGtGKTl~~L~~al 49 (289)
T smart00489 7 YEPYPIQYEFMEELKRVLDRG---KIGILESPTGTGKTLSLLCLTL 49 (289)
T ss_pred CCCCHHHHHHHHHHHHHHHcC---CcEEEECCCCcchhHHHHHHHH
Confidence 346999999666665544432 2367888999999998887764
No 173
>PHA02929 N1R/p28-like protein; Provisional
Probab=96.66 E-value=0.001 Score=70.77 Aligned_cols=47 Identities=28% Similarity=0.797 Sum_probs=36.7
Q ss_pred ccccccccCCCCCC--------ccccccCcccchhhhhhhccCCCCCCCCcchhhccc
Q 001840 717 SSAICCVCSDPPED--------SVVTMCGHVFCYQCASEYITGDDNMCPAPRCKEQLG 766 (1007)
Q Consensus 717 ~~~~C~~c~d~~~~--------~v~t~CgH~~c~~ci~~~~~~~~~~cp~~~cr~~l~ 766 (1007)
...+|++|++...+ ++++.|+|+||..|+.+|+.. ...|| .||..+.
T Consensus 173 ~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~-~~tCP--lCR~~~~ 227 (238)
T PHA02929 173 KDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKE-KNTCP--VCRTPFI 227 (238)
T ss_pred CCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhc-CCCCC--CCCCEee
Confidence 45789999997543 367899999999999998763 55787 6887654
No 174
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=96.65 E-value=0.00082 Score=53.75 Aligned_cols=46 Identities=33% Similarity=0.925 Sum_probs=37.5
Q ss_pred cccccccCCCCCCccccccCcc-cchhhhhhhccCCCCCCCCcchhhccc
Q 001840 718 SAICCVCSDPPEDSVVTMCGHV-FCYQCASEYITGDDNMCPAPRCKEQLG 766 (1007)
Q Consensus 718 ~~~C~~c~d~~~~~v~t~CgH~-~c~~ci~~~~~~~~~~cp~~~cr~~l~ 766 (1007)
+..|.+|.+.+.++++.+|||. ||..|...++. ....|| .||..+.
T Consensus 2 ~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~-~~~~CP--~Cr~~i~ 48 (50)
T PF13920_consen 2 DEECPICFENPRDVVLLPCGHLCFCEECAERLLK-RKKKCP--ICRQPIE 48 (50)
T ss_dssp HSB-TTTSSSBSSEEEETTCEEEEEHHHHHHHHH-TTSBBT--TTTBB-S
T ss_pred cCCCccCCccCCceEEeCCCChHHHHHHhHHhcc-cCCCCC--cCChhhc
Confidence 3579999999999999999999 99999999987 556777 5877653
No 175
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=96.63 E-value=0.031 Score=59.53 Aligned_cols=41 Identities=22% Similarity=0.347 Sum_probs=27.4
Q ss_pred cCchHHHHHHHHHHHhhhcCCCccCceeecCCCCchHHHHHHHHHhh
Q 001840 274 NLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQ 320 (1007)
Q Consensus 274 ~LrpyQ~~~v~wml~~e~~~~~~~GGILADdmGLGKTiqaIali~~~ 320 (1007)
.|-+.|+.|+..++.... . .++.-..|.|||-+..+++...
T Consensus 1 ~ln~~Q~~Ai~~~~~~~~--~----~~i~GpPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 1 KLNESQREAIQSALSSNG--I----TLIQGPPGTGKTTTLASIIAQL 41 (236)
T ss_dssp ---HHHHHHHHHHCTSSE-------EEEE-STTSSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHcCCC--C----EEEECCCCCChHHHHHHHHHHh
Confidence 377899999988874322 0 5788889999997776666553
No 176
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=96.50 E-value=0.019 Score=69.98 Aligned_cols=79 Identities=8% Similarity=0.095 Sum_probs=50.8
Q ss_pred eEEEEecchhHHHHHHHHHhhc-CCeEEEecCCCChHHHHHHHHhhccC--cccceeeeeccCccccccc----------
Q 001840 854 KSIVFSQWTRMLDLVENSLNQH-CIQYRRLDGTMSLPARDRAVKDFNTD--REITVMLMSLKAGNLGLNM---------- 920 (1007)
Q Consensus 854 KvIIFsq~~~~ld~L~~~L~~~-gi~~~~i~Gs~s~~~R~~~I~~F~~~--~~~~VlLlStkagg~GLNL---------- 920 (1007)
-.++|+.+. .+..+.+.|... .++ +.+.|..+ .|..++++|.+. ....-+|+.+.+..+|+++
T Consensus 473 ~lvLfTS~~-~~~~~~~~l~~~l~~~-~l~qg~~~--~~~~l~~~f~~~~~~~~~~vL~gt~sfweGvDv~~~~~~p~~G 548 (636)
T TIGR03117 473 TLVLTTAFS-HISAIGQLVELGIPAE-IVIQSEKN--RLASAEQQFLALYANGIQPVLIAAGGAWTGIDLTHKPVSPDKD 548 (636)
T ss_pred EEEEechHH-HHHHHHHHHHhhcCCC-EEEeCCCc--cHHHHHHHHHHhhcCCCCcEEEeCCccccccccCCccCCCCCC
Confidence 455666655 455555566543 233 34556442 567899999974 1223345567999999999
Q ss_pred ccCCEEEEecCCCCCC
Q 001840 921 VAASHVILLDLWWNPT 936 (1007)
Q Consensus 921 ~~A~~VI~~Dp~WNp~ 936 (1007)
...+.||+.-+|+-|.
T Consensus 549 ~~Ls~ViI~kLPF~~~ 564 (636)
T TIGR03117 549 NLLTDLIITCAPFGLN 564 (636)
T ss_pred CcccEEEEEeCCCCcC
Confidence 2378899999988764
No 177
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=96.46 E-value=0.00083 Score=51.62 Aligned_cols=30 Identities=33% Similarity=0.862 Sum_probs=20.0
Q ss_pred ccccCCCCCC----ccccccCcccchhhhhhhccC
Q 001840 721 CCVCSDPPED----SVVTMCGHVFCYQCASEYITG 751 (1007)
Q Consensus 721 C~~c~d~~~~----~v~t~CgH~~c~~ci~~~~~~ 751 (1007)
|++|.+ ... |++..|||+||.+|+..+...
T Consensus 1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l~~~ 34 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKLSKK 34 (43)
T ss_dssp -TTT-----TTSS-EEE-SSS-EEEHHHHHHHHHH
T ss_pred CCcccc-ccCCCCCCEEEeCccHHHHHHHHHHHhc
Confidence 778887 555 888889999999999998763
No 178
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=96.34 E-value=0.0017 Score=56.50 Aligned_cols=51 Identities=14% Similarity=0.324 Sum_probs=38.9
Q ss_pred cccccccCCCCCCccccccCcccchhhhhhhccCCCCCCCCcchhhcccccce
Q 001840 718 SAICCVCSDPPEDSVVTMCGHVFCYQCASEYITGDDNMCPAPRCKEQLGADVV 770 (1007)
Q Consensus 718 ~~~C~~c~d~~~~~v~t~CgH~~c~~ci~~~~~~~~~~cp~~~cr~~l~~~~~ 770 (1007)
...|++|.+.+.+||++.|||+|++.|+..++......||. |+..+..+.+
T Consensus 4 ~f~CpIt~~lM~dPVi~~~G~tyer~~I~~~l~~~~~~~P~--t~~~l~~~~l 54 (73)
T PF04564_consen 4 EFLCPITGELMRDPVILPSGHTYERSAIERWLEQNGGTDPF--TRQPLSESDL 54 (73)
T ss_dssp GGB-TTTSSB-SSEEEETTSEEEEHHHHHHHHCTTSSB-TT--T-SB-SGGGS
T ss_pred ccCCcCcCcHhhCceeCCcCCEEcHHHHHHHHHcCCCCCCC--CCCcCCcccc
Confidence 35799999999999999999999999999999987788884 5666655544
No 179
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=96.12 E-value=0.0032 Score=46.56 Aligned_cols=37 Identities=38% Similarity=1.034 Sum_probs=31.9
Q ss_pred ccccCCCCCCccccccCcccchhhhhhhccCCCCCCC
Q 001840 721 CCVCSDPPEDSVVTMCGHVFCYQCASEYITGDDNMCP 757 (1007)
Q Consensus 721 C~~c~d~~~~~v~t~CgH~~c~~ci~~~~~~~~~~cp 757 (1007)
|++|.+....+++..|+|.||..|+..++......||
T Consensus 1 C~iC~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~CP 37 (39)
T smart00184 1 CPICLEELKDPVVLPCGHTFCRSCIRKWLKSGNNTCP 37 (39)
T ss_pred CCcCccCCCCcEEecCCChHHHHHHHHHHHhCcCCCC
Confidence 6789988888999999999999999999875555676
No 180
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=96.09 E-value=0.016 Score=70.17 Aligned_cols=34 Identities=18% Similarity=0.126 Sum_probs=29.5
Q ss_pred EEEEccCcccCCcccHHHHHHHhcccCcEEEEecc
Q 001840 514 RVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGT 548 (1007)
Q Consensus 514 rVIlDEAH~iKN~~s~~~kal~~L~a~~r~lLTGT 548 (1007)
.|||||-|++... .+.+.++..+++...+=.+||
T Consensus 208 IvIvDEPh~f~~~-~k~~~~i~~l~pl~ilRfgAT 241 (985)
T COG3587 208 IVIVDEPHRFLGD-DKTYGAIKQLNPLLILRFGAT 241 (985)
T ss_pred EEEecChhhcccc-hHHHHHHHhhCceEEEEeccc
Confidence 4999999999876 688999999998887778887
No 181
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=95.98 E-value=0.0029 Score=66.74 Aligned_cols=44 Identities=32% Similarity=0.756 Sum_probs=36.7
Q ss_pred ccccccccCCCCCCccccccCcccchhhhhhhccCCCCCCCCcchhh
Q 001840 717 SSAICCVCSDPPEDSVVTMCGHVFCYQCASEYITGDDNMCPAPRCKE 763 (1007)
Q Consensus 717 ~~~~C~~c~d~~~~~v~t~CgH~~c~~ci~~~~~~~~~~cp~~~cr~ 763 (1007)
+...|.||.+-...|++|.|||.||.-||..++. ..+.||+ |+.
T Consensus 24 s~lrC~IC~~~i~ip~~TtCgHtFCslCIR~hL~-~qp~CP~--Cr~ 67 (391)
T COG5432 24 SMLRCRICDCRISIPCETTCGHTFCSLCIRRHLG-TQPFCPV--CRE 67 (391)
T ss_pred hHHHhhhhhheeecceecccccchhHHHHHHHhc-CCCCCcc--ccc
Confidence 3457999999999999999999999999999885 4567774 544
No 182
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=95.96 E-value=0.0048 Score=50.92 Aligned_cols=47 Identities=28% Similarity=0.666 Sum_probs=24.6
Q ss_pred cccccccCCCCCCcc-ccccCcccchhhhhhhccCCCCCCCCcchhhcccccc
Q 001840 718 SAICCVCSDPPEDSV-VTMCGHVFCYQCASEYITGDDNMCPAPRCKEQLGADV 769 (1007)
Q Consensus 718 ~~~C~~c~d~~~~~v-~t~CgH~~c~~ci~~~~~~~~~~cp~~~cr~~l~~~~ 769 (1007)
...|+.|.+.+..|| ++.|.|+||..|+...+.. .|| .|..+.+..+
T Consensus 7 lLrCs~C~~~l~~pv~l~~CeH~fCs~Ci~~~~~~---~CP--vC~~Paw~qD 54 (65)
T PF14835_consen 7 LLRCSICFDILKEPVCLGGCEHIFCSSCIRDCIGS---ECP--VCHTPAWIQD 54 (65)
T ss_dssp TTS-SSS-S--SS-B---SSS--B-TTTGGGGTTT---B-S--SS--B-S-SS
T ss_pred hcCCcHHHHHhcCCceeccCccHHHHHHhHHhcCC---CCC--CcCChHHHHH
Confidence 457999999999997 7999999999999987654 366 5766665543
No 183
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=95.94 E-value=0.0039 Score=47.83 Aligned_cols=42 Identities=36% Similarity=0.969 Sum_probs=32.1
Q ss_pred cccccCCCCCCccc-cccCcccchhhhhhhccCCCCCCCCcchhh
Q 001840 720 ICCVCSDPPEDSVV-TMCGHVFCYQCASEYITGDDNMCPAPRCKE 763 (1007)
Q Consensus 720 ~C~~c~d~~~~~v~-t~CgH~~c~~ci~~~~~~~~~~cp~~~cr~ 763 (1007)
.|++|.+....++. ..|||.||..|+..++......|| .|+.
T Consensus 1 ~C~iC~~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~Cp--~C~~ 43 (45)
T cd00162 1 ECPICLEEFREPVVLLPCGHVFCRSCIDKWLKSGKNTCP--LCRT 43 (45)
T ss_pred CCCcCchhhhCceEecCCCChhcHHHHHHHHHhCcCCCC--CCCC
Confidence 48899988855544 459999999999999877566777 4543
No 184
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.86 E-value=0.0037 Score=65.91 Aligned_cols=48 Identities=31% Similarity=0.754 Sum_probs=38.4
Q ss_pred ccccccccCCCCCCccccccCcccchhhhhhhccCCCC-CCCCcchhhccc
Q 001840 717 SSAICCVCSDPPEDSVVTMCGHVFCYQCASEYITGDDN-MCPAPRCKEQLG 766 (1007)
Q Consensus 717 ~~~~C~~c~d~~~~~v~t~CgH~~c~~ci~~~~~~~~~-~cp~~~cr~~l~ 766 (1007)
.+-.|.+|++.++.|.-+.|||+||..|+...++.... .|| .||....
T Consensus 214 ~d~kC~lC~e~~~~ps~t~CgHlFC~~Cl~~~~t~~k~~~Cp--lCRak~~ 262 (271)
T COG5574 214 ADYKCFLCLEEPEVPSCTPCGHLFCLSCLLISWTKKKYEFCP--LCRAKVY 262 (271)
T ss_pred cccceeeeecccCCcccccccchhhHHHHHHHHHhhccccCc--hhhhhcc
Confidence 35679999999999999999999999999885555444 488 5665443
No 185
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=95.84 E-value=0.0025 Score=49.42 Aligned_cols=37 Identities=38% Similarity=0.841 Sum_probs=29.8
Q ss_pred cccccCCCC---CCccccccCcccchhhhhhhccCCCCCCC
Q 001840 720 ICCVCSDPP---EDSVVTMCGHVFCYQCASEYITGDDNMCP 757 (1007)
Q Consensus 720 ~C~~c~d~~---~~~v~t~CgH~~c~~ci~~~~~~~~~~cp 757 (1007)
+|+||.+.. +..+...|+|+||..|+.+|+... ..||
T Consensus 2 ~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~~-~~CP 41 (44)
T PF13639_consen 2 ECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKRN-NSCP 41 (44)
T ss_dssp CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHHS-SB-T
T ss_pred CCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHhC-CcCC
Confidence 689998865 456788899999999999998764 4777
No 186
>PHA02926 zinc finger-like protein; Provisional
Probab=95.77 E-value=0.0051 Score=63.27 Aligned_cols=48 Identities=21% Similarity=0.665 Sum_probs=36.1
Q ss_pred ccccccccCCCCC---------CccccccCcccchhhhhhhccCC-----CCCCCCcchhhccc
Q 001840 717 SSAICCVCSDPPE---------DSVVTMCGHVFCYQCASEYITGD-----DNMCPAPRCKEQLG 766 (1007)
Q Consensus 717 ~~~~C~~c~d~~~---------~~v~t~CgH~~c~~ci~~~~~~~-----~~~cp~~~cr~~l~ 766 (1007)
.+.+|++|++..- ..++..|+|.||..|+..|.... ...|| .||....
T Consensus 169 kE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCP--iCR~~f~ 230 (242)
T PHA02926 169 KEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCP--ICRTRFR 230 (242)
T ss_pred CCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCC--CCcceee
Confidence 4678999998631 25899999999999999997642 23476 6887654
No 187
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=95.67 E-value=0.059 Score=68.52 Aligned_cols=97 Identities=20% Similarity=0.180 Sum_probs=67.8
Q ss_pred eEEEEecchhHHHHHHHHHhhcCCeEEEecCCCChHHHHHHHHhhccCcccceeeeeccCccccccccc--CCEEEEecC
Q 001840 854 KSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVA--ASHVILLDL 931 (1007)
Q Consensus 854 KvIIFsq~~~~ld~L~~~L~~~gi~~~~i~Gs~s~~~R~~~I~~F~~~~~~~VlLlStkagg~GLNL~~--A~~VI~~Dp 931 (1007)
+++|+....++++.+...|....+.. ...|... .|.+++++|+.+ +-.||| .+.+..||+++.. +..||+.-+
T Consensus 649 ~~LVLFtS~~~l~~v~~~l~~~~~~~-l~Qg~~~--~~~~l~~~F~~~-~~~vLl-G~~sFwEGVD~p~~~~~~viI~kL 723 (820)
T PRK07246 649 PILVLFNSKKHLLAVSDLLDQWQVSH-LAQEKNG--TAYNIKKRFDRG-EQQILL-GLGSFWEGVDFVQADRMIEVITRL 723 (820)
T ss_pred CEEEEECcHHHHHHHHHHHhhcCCcE-EEeCCCc--cHHHHHHHHHcC-CCeEEE-ecchhhCCCCCCCCCeEEEEEecC
Confidence 78888888888898888887665544 4555432 356799999874 334555 5599999999963 555677765
Q ss_pred C-CCCC-----------------------------hhHHHhHhhhccCCcccEE
Q 001840 932 W-WNPT-----------------------------TEDQAVDRAHRIGQTRPVT 955 (1007)
Q Consensus 932 ~-WNp~-----------------------------~e~QaigRi~RiGQ~k~V~ 955 (1007)
| .+|. ...|++||+.|--..+.|.
T Consensus 724 PF~~P~dP~~~a~~~~~~~~g~~~F~~~~lP~A~iklkQg~GRLIRs~~D~Gvv 777 (820)
T PRK07246 724 PFDNPEDPFVKKMNQYLLQEGKNPFYDYFLPMTILRLKQAIGRTMRREDQKSAV 777 (820)
T ss_pred CCCCCCCHHHHHHHHHHHHhCCCchhheeHHHHHHHHHHHhcccccCCCCcEEE
Confidence 5 3342 2349999999977666653
No 188
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.59 E-value=0.0069 Score=64.84 Aligned_cols=59 Identities=22% Similarity=0.528 Sum_probs=51.3
Q ss_pred ccccccccCCCCCCccccccCcccchhhhhhhccCCCCCCCCcchhhcccccceecccccc
Q 001840 717 SSAICCVCSDPPEDSVVTMCGHVFCYQCASEYITGDDNMCPAPRCKEQLGADVVFSKTTLK 777 (1007)
Q Consensus 717 ~~~~C~~c~d~~~~~v~t~CgH~~c~~ci~~~~~~~~~~cp~~~cr~~l~~~~~~~~~~l~ 777 (1007)
...+|.||...+.-|+...|+|.||+-|+......+...|+ .||.++..+..+....+.
T Consensus 6 ~~~eC~IC~nt~n~Pv~l~C~HkFCyiCiKGsy~ndk~~Ca--vCR~pids~i~~~psl~~ 64 (324)
T KOG0824|consen 6 KKKECLICYNTGNCPVNLYCFHKFCYICIKGSYKNDKKTCA--VCRFPIDSTIDFEPSLKY 64 (324)
T ss_pred cCCcceeeeccCCcCccccccchhhhhhhcchhhcCCCCCc--eecCCCCcchhcchhhhh
Confidence 46799999999999999999999999999988887777888 799999998887665543
No 189
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=95.55 E-value=0.0087 Score=46.43 Aligned_cols=38 Identities=32% Similarity=0.842 Sum_probs=30.1
Q ss_pred cccccCCCC---CCccccccCcccchhhhhhhccCCCCCCCC
Q 001840 720 ICCVCSDPP---EDSVVTMCGHVFCYQCASEYITGDDNMCPA 758 (1007)
Q Consensus 720 ~C~~c~d~~---~~~v~t~CgH~~c~~ci~~~~~~~~~~cp~ 758 (1007)
.|.+|.... ..++++.|||+||..|+.... .....||.
T Consensus 1 ~C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~-~~~~~CP~ 41 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTSCGHIFCEKCLKKLK-GKSVKCPI 41 (44)
T ss_pred CCcCcCccccCCCCeEEcccCCHHHHHHHHhhc-CCCCCCcC
Confidence 377887765 358999999999999999887 55567773
No 190
>PRK10536 hypothetical protein; Provisional
Probab=95.51 E-value=0.021 Score=61.69 Aligned_cols=40 Identities=25% Similarity=0.248 Sum_probs=31.8
Q ss_pred eEEEEccCcccCCcccHHHHHHHhcccCcEEEEeccCCCCCh
Q 001840 513 FRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSI 554 (1007)
Q Consensus 513 ~rVIlDEAH~iKN~~s~~~kal~~L~a~~r~lLTGTPi~N~l 554 (1007)
.+|||||||++.- .+....+..+....+++++|-|-|..+
T Consensus 178 ~~vIvDEaqn~~~--~~~k~~ltR~g~~sk~v~~GD~~QiD~ 217 (262)
T PRK10536 178 AVVILDEAQNVTA--AQMKMFLTRLGENVTVIVNGDITQCDL 217 (262)
T ss_pred CEEEEechhcCCH--HHHHHHHhhcCCCCEEEEeCChhhccC
Confidence 5799999999865 355566677888899999999876654
No 191
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=95.46 E-value=0.0058 Score=50.17 Aligned_cols=45 Identities=33% Similarity=0.668 Sum_probs=31.7
Q ss_pred ccccccccCCCCCCcccc-ccCcccchhhhhhhcc-CCCCCCCCcch
Q 001840 717 SSAICCVCSDPPEDSVVT-MCGHVFCYQCASEYIT-GDDNMCPAPRC 761 (1007)
Q Consensus 717 ~~~~C~~c~d~~~~~v~t-~CgH~~c~~ci~~~~~-~~~~~cp~~~c 761 (1007)
....|++...+..+||.+ .|+|+|..+.+.+|+. .....||...|
T Consensus 10 ~~~~CPiT~~~~~~PV~s~~C~H~fek~aI~~~i~~~~~~~CPv~GC 56 (57)
T PF11789_consen 10 ISLKCPITLQPFEDPVKSKKCGHTFEKEAILQYIQRNGSKRCPVAGC 56 (57)
T ss_dssp --SB-TTTSSB-SSEEEESSS--EEEHHHHHHHCTTTS-EE-SCCC-
T ss_pred eccCCCCcCChhhCCcCcCCCCCeecHHHHHHHHHhcCCCCCCCCCC
Confidence 456899999999999886 9999999999999993 44568998877
No 192
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=95.45 E-value=0.0085 Score=65.67 Aligned_cols=50 Identities=24% Similarity=0.642 Sum_probs=37.3
Q ss_pred cccccccCCC-CCC----ccccccCcccchhhhhhhccCCCCCCCCcchhhcccccc
Q 001840 718 SAICCVCSDP-PED----SVVTMCGHVFCYQCASEYITGDDNMCPAPRCKEQLGADV 769 (1007)
Q Consensus 718 ~~~C~~c~d~-~~~----~v~t~CgH~~c~~ci~~~~~~~~~~cp~~~cr~~l~~~~ 769 (1007)
+..|++|... ... ..+..|||.||..|+..++......|| .|+..+....
T Consensus 3 ~~~CP~Ck~~~y~np~~kl~i~~CGH~~C~sCv~~l~~~~~~~CP--~C~~~lrk~~ 57 (309)
T TIGR00570 3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGSGSCP--ECDTPLRKNN 57 (309)
T ss_pred CCCCCcCCCCCccCcccccccCCCCCcccHHHHHHHhcCCCCCCC--CCCCccchhh
Confidence 3579999863 111 245589999999999999877666666 8988887665
No 193
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=95.25 E-value=0.074 Score=54.19 Aligned_cols=98 Identities=21% Similarity=0.275 Sum_probs=63.7
Q ss_pred CeEEEEecchhHHHHHHHHHhhcC----CeEEEecCCCChHHHHHHHHhhccCcccceeeeecc--Cccccccccc--CC
Q 001840 853 IKSIVFSQWTRMLDLVENSLNQHC----IQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLK--AGNLGLNMVA--AS 924 (1007)
Q Consensus 853 ~KvIIFsq~~~~ld~L~~~L~~~g----i~~~~i~Gs~s~~~R~~~I~~F~~~~~~~VlLlStk--agg~GLNL~~--A~ 924 (1007)
.++|||...-..++.+...+...+ +.+..- ...++.+++++|..+. ..+|+++. ..++|+|+.. +.
T Consensus 10 g~~lv~f~Sy~~l~~~~~~~~~~~~~~~~~v~~q----~~~~~~~~l~~~~~~~--~~il~~v~~g~~~EGiD~~~~~~r 83 (167)
T PF13307_consen 10 GGVLVFFPSYRRLEKVYERLKERLEEKGIPVFVQ----GSKSRDELLEEFKRGE--GAILLAVAGGSFSEGIDFPGDLLR 83 (167)
T ss_dssp SEEEEEESSHHHHHHHHTT-TSS-E-ETSCEEES----TCCHHHHHHHHHCCSS--SEEEEEETTSCCGSSS--ECESEE
T ss_pred CCEEEEeCCHHHHHHHHHHHHhhcccccceeeec----CcchHHHHHHHHHhcc--CeEEEEEecccEEEeecCCCchhh
Confidence 399999999999999999998763 333222 2468889999999853 33455556 8899999996 66
Q ss_pred EEEEecCCC-CCC-----------------------------hhHHHhHhhhccCCcccEEE
Q 001840 925 HVILLDLWW-NPT-----------------------------TEDQAVDRAHRIGQTRPVTV 956 (1007)
Q Consensus 925 ~VI~~Dp~W-Np~-----------------------------~e~QaigRi~RiGQ~k~V~V 956 (1007)
.||+.-+|+ +|. ...||+||+.|-.+.+-+.|
T Consensus 84 ~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~Qa~GR~iR~~~D~g~i~ 145 (167)
T PF13307_consen 84 AVIIVGLPFPPPSDPLVQAKREYLDKQGKNPFRDWYLPPAIRKLKQAIGRLIRSEDDYGVII 145 (167)
T ss_dssp EEEEES-----TTCHHHHHHHHHHHHCCTTCHHHHTHHHHHHHHHHHHHCC--STT-EEEEE
T ss_pred eeeecCCCCCCCCCHHHHHHHHHHHHHhccchhhHhhHHHHHHHhhhcCcceeccCCcEEEE
Confidence 788888886 332 22389999999777655443
No 194
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=95.24 E-value=0.036 Score=58.12 Aligned_cols=44 Identities=16% Similarity=0.254 Sum_probs=22.0
Q ss_pred cceeEEEEccCcccCCcccHHHHHHHhcccCcEEEEeccCCCCChh
Q 001840 510 VGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSID 555 (1007)
Q Consensus 510 ~~w~rVIlDEAH~iKN~~s~~~kal~~L~a~~r~lLTGTPi~N~l~ 555 (1007)
+....|||||||++... +.-..+.++....+++++|=|.|....
T Consensus 118 ~~~~~iIvDEaQN~t~~--~~k~ilTR~g~~skii~~GD~~Q~D~~ 161 (205)
T PF02562_consen 118 FDNAFIIVDEAQNLTPE--ELKMILTRIGEGSKIIITGDPSQIDLP 161 (205)
T ss_dssp B-SEEEEE-SGGG--HH--HHHHHHTTB-TT-EEEEEE--------
T ss_pred ccceEEEEecccCCCHH--HHHHHHcccCCCcEEEEecCceeecCC
Confidence 34578999999997543 333445566777999999999876544
No 195
>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification]
Probab=95.18 E-value=0.08 Score=62.62 Aligned_cols=80 Identities=24% Similarity=0.356 Sum_probs=61.2
Q ss_pred cCchHHHHHHHHHHHhhhcCCCccCceeecCCCCchHHHHHHHHHhhccccccchhhhccccccccccCCCCCCCCCcCc
Q 001840 274 NLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLDDDDDNGNAGL 353 (1007)
Q Consensus 274 ~LrpyQ~~~v~wml~~e~~~~~~~GGILADdmGLGKTiqaIali~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (1007)
+|-.-|..||...+++.- .||--..|.|||++..+++.....
T Consensus 410 kLN~SQ~~AV~~VL~rpl-------sLIQGPPGTGKTvtsa~IVyhl~~------------------------------- 451 (935)
T KOG1802|consen 410 KLNASQSNAVKHVLQRPL-------SLIQGPPGTGKTVTSATIVYHLAR------------------------------- 451 (935)
T ss_pred hhchHHHHHHHHHHcCCc-------eeeecCCCCCceehhHHHHHHHHH-------------------------------
Confidence 477899999999997643 488999999999988666644221
Q ss_pred ccccccCCCCCCCCCCcccccccccCCCCCCCceEEEcChhh-HHHHHHHHHHHcCCCCCeEEEEEeCCCCC
Q 001840 354 DKVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPASV-LRQWARELEDKVPDKAALSVLIYHGGSRT 424 (1007)
Q Consensus 354 ~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tLIV~P~sL-l~QW~~Ei~k~~~~~~~l~vlv~~g~~r~ 424 (1007)
...+++||++|..+ +.|-..-|.+- .++|+.....+|.
T Consensus 452 ----------------------------~~~~~VLvcApSNiAVDqLaeKIh~t-----gLKVvRl~aksRE 490 (935)
T KOG1802|consen 452 ----------------------------QHAGPVLVCAPSNIAVDQLAEKIHKT-----GLKVVRLCAKSRE 490 (935)
T ss_pred ----------------------------hcCCceEEEcccchhHHHHHHHHHhc-----CceEeeeehhhhh
Confidence 23466999999885 79999999874 5888887776554
No 196
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=95.17 E-value=1 Score=54.16 Aligned_cols=80 Identities=16% Similarity=0.209 Sum_probs=51.8
Q ss_pred eEEEEecchhHHHHHHHHHhhcCCeEEEecCCCC-----hHHHHHHHHhhccC--cccceeeee--ccCccccccccc--
Q 001840 854 KSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMS-----LPARDRAVKDFNTD--REITVMLMS--LKAGNLGLNMVA-- 922 (1007)
Q Consensus 854 KvIIFsq~~~~ld~L~~~L~~~gi~~~~i~Gs~s-----~~~R~~~I~~F~~~--~~~~VlLlS--tkagg~GLNL~~-- 922 (1007)
-||+|-..-..+..+.+.+++.|+- .+|.|..+ ...-+.+++.|... .+.-.||++ -.-+++|||+.+
T Consensus 631 GvV~FfPSy~yL~~v~k~w~~~gil-~ri~~kK~vF~E~k~~~~dvl~~Ya~a~~~g~GaiLlaVVGGKlSEGINF~D~L 709 (821)
T KOG1133|consen 631 GVVCFFPSYAYLGQVRKRWEQNGIL-ARIVGKKKVFYEPKDTVEDVLEGYAEAAERGRGAILLAVVGGKLSEGINFSDDL 709 (821)
T ss_pred cEEEEeccHHHHHHHHHHHHhcchH-HHhhccchhhccCcccHHHHHHHHHHHhhcCCCeEEEEEecccccccccccccc
Confidence 7899999999999999999988762 22222210 01134567777641 122244545 233569999998
Q ss_pred CCEEEEecCCCC
Q 001840 923 ASHVILLDLWWN 934 (1007)
Q Consensus 923 A~~VI~~Dp~WN 934 (1007)
+..|+++.+|+-
T Consensus 710 gRaVvvVGlPyP 721 (821)
T KOG1133|consen 710 GRAVVVVGLPYP 721 (821)
T ss_pred ccEEEEeecCCC
Confidence 777888888874
No 197
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=95.15 E-value=0.015 Score=74.96 Aligned_cols=80 Identities=19% Similarity=0.174 Sum_probs=54.7
Q ss_pred EEEEecchhHHHHHHHHHhhcCCeEEEecCCCChHHHHHHHHhhccCcccceeeeeccCcccccccccCCEEEEecCCCC
Q 001840 855 SIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDLWWN 934 (1007)
Q Consensus 855 vIIFsq~~~~ld~L~~~L~~~gi~~~~i~Gs~s~~~R~~~I~~F~~~~~~~VlLlStkagg~GLNL~~A~~VI~~Dp~WN 934 (1007)
+++|+-...+..++...+.. .+.+...+...++.+|... +......+|.+|..++..+.++++|+
T Consensus 445 ~~~~~v~itty~~l~~~~~~--------~~~l~~~~~~~~v~DEa~~-------ikn~~s~~~~~l~~~~~~~~~~LtgT 509 (866)
T COG0553 445 VIIFDVVITTYELLRRFLVD--------HGGLKKIEWDRVVLDEAHR-------IKNDQSSEGKALQFLKALNRLDLTGT 509 (866)
T ss_pred cceeeEEechHHHHHHhhhh--------HHHHhhceeeeeehhhHHH-------HhhhhhHHHHHHHHHhhcceeeCCCC
Confidence 57888888888888875411 1111111222222222211 34567788999999999999999999
Q ss_pred CChhHHHhHhhhccCCc
Q 001840 935 PTTEDQAVDRAHRIGQT 951 (1007)
Q Consensus 935 p~~e~QaigRi~RiGQ~ 951 (1007)
| .+|++++.++++|.
T Consensus 510 P--len~l~eL~sl~~~ 524 (866)
T COG0553 510 P--LENRLGELWSLLQE 524 (866)
T ss_pred h--HhhhHHHHHHHHHH
Confidence 9 79999999999995
No 198
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=94.95 E-value=0.0046 Score=66.68 Aligned_cols=45 Identities=24% Similarity=0.656 Sum_probs=37.2
Q ss_pred ccccccccCCCCCCccccccCcccchhhhhhhccCCCCCCCCcchhhc
Q 001840 717 SSAICCVCSDPPEDSVVTMCGHVFCYQCASEYITGDDNMCPAPRCKEQ 764 (1007)
Q Consensus 717 ~~~~C~~c~d~~~~~v~t~CgH~~c~~ci~~~~~~~~~~cp~~~cr~~ 764 (1007)
....|.||.+-...|++++|+|.||--||..++.. .+.|| .|.-.
T Consensus 22 ~lLRC~IC~eyf~ip~itpCsHtfCSlCIR~~L~~-~p~CP--~C~~~ 66 (442)
T KOG0287|consen 22 DLLRCGICFEYFNIPMITPCSHTFCSLCIRKFLSY-KPQCP--TCCVT 66 (442)
T ss_pred HHHHHhHHHHHhcCceeccccchHHHHHHHHHhcc-CCCCC--ceecc
Confidence 34569999999999999999999999999999864 56777 45443
No 199
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=94.82 E-value=0.18 Score=65.33 Aligned_cols=100 Identities=20% Similarity=0.217 Sum_probs=70.0
Q ss_pred eEEEEecchhHHHHHHHHHhhcCC--eEEEecCCCChHHHHHHHHhhccCcccceeeeeccCccccccccc--CCEEEEe
Q 001840 854 KSIVFSQWTRMLDLVENSLNQHCI--QYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVA--ASHVILL 929 (1007)
Q Consensus 854 KvIIFsq~~~~ld~L~~~L~~~gi--~~~~i~Gs~s~~~R~~~I~~F~~~~~~~VlLlStkagg~GLNL~~--A~~VI~~ 929 (1007)
++|||.....++..+...|..... .+..+.-+++...|.++++.|+.. +-.||| .+.+..||+++.. ...||+.
T Consensus 754 ~~LVLFtSy~~l~~v~~~l~~~~~~~~~~ll~Qg~~~~~r~~l~~~F~~~-~~~iLl-G~~sFwEGVD~pg~~l~~viI~ 831 (928)
T PRK08074 754 RMLVLFTSYEMLKKTYYNLKNEEELEGYVLLAQGVSSGSRARLTKQFQQF-DKAILL-GTSSFWEGIDIPGDELSCLVIV 831 (928)
T ss_pred CEEEEECCHHHHHHHHHHHhhcccccCceEEecCCCCCCHHHHHHHHHhc-CCeEEE-ecCcccCccccCCCceEEEEEe
Confidence 778877788888888888875422 122232223334688999999964 233555 5689999999998 4778888
Q ss_pred cCCC-CCC-----------------------------hhHHHhHhhhccCCcccEE
Q 001840 930 DLWW-NPT-----------------------------TEDQAVDRAHRIGQTRPVT 955 (1007)
Q Consensus 930 Dp~W-Np~-----------------------------~e~QaigRi~RiGQ~k~V~ 955 (1007)
-+|+ +|. ...|++||+.|-.+.+-|.
T Consensus 832 kLPF~~p~dp~~~a~~~~~~~~g~~~F~~~~lP~A~~~lkQg~GRlIRs~~D~G~v 887 (928)
T PRK08074 832 RLPFAPPDQPVMEAKSEWAKEQGENPFQELSLPQAVLRFKQGFGRLIRTETDRGTV 887 (928)
T ss_pred cCCCCCCCCHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHhhhhhhcccCCceEEE
Confidence 8787 454 2248999999988877653
No 200
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=94.73 E-value=0.078 Score=57.93 Aligned_cols=102 Identities=21% Similarity=0.163 Sum_probs=61.4
Q ss_pred cccCchHHHHHHHHHHHhhhcCCCccCceeecCCCCchHHHHHHHHHhhccccccchhhhccccccccccCCCCCCCCCc
Q 001840 272 SVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLDDDDDNGNA 351 (1007)
Q Consensus 272 ~~~LrpyQ~~~v~wml~~e~~~~~~~GGILADdmGLGKTiqaIali~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (1007)
...+++-|+.|+--|. .|-|.=-.+|=|||+++..++.. ..+
T Consensus 75 g~~p~~vQll~~l~L~---------~G~laEm~TGEGKTli~~l~a~~-~AL---------------------------- 116 (266)
T PF07517_consen 75 GLRPYDVQLLGALALH---------KGRLAEMKTGEGKTLIAALPAAL-NAL---------------------------- 116 (266)
T ss_dssp S----HHHHHHHHHHH---------TTSEEEESTTSHHHHHHHHHHHH-HHT----------------------------
T ss_pred CCcccHHHHhhhhhcc---------cceeEEecCCCCcHHHHHHHHHH-HHH----------------------------
Confidence 4456666777665442 45688889999999988544433 222
Q ss_pred CcccccccCCCCCCCCCCcccccccccCCCCCCCceEEEcChhhH----HHHHHHHHHHcCCCCCeEEEEEeCCCCCCCc
Q 001840 352 GLDKVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPASVL----RQWARELEDKVPDKAALSVLIYHGGSRTKDP 427 (1007)
Q Consensus 352 ~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tLIV~P~sLl----~QW~~Ei~k~~~~~~~l~vlv~~g~~r~~~~ 427 (1007)
..+++-||+.+..| .+|...|-++++ ++|-...+.......
T Consensus 117 -------------------------------~G~~V~vvT~NdyLA~RD~~~~~~~y~~LG----lsv~~~~~~~~~~~r 161 (266)
T PF07517_consen 117 -------------------------------QGKGVHVVTSNDYLAKRDAEEMRPFYEFLG----LSVGIITSDMSSEER 161 (266)
T ss_dssp -------------------------------TSS-EEEEESSHHHHHHHHHHHHHHHHHTT------EEEEETTTEHHHH
T ss_pred -------------------------------hcCCcEEEeccHHHhhccHHHHHHHHHHhh----hccccCccccCHHHH
Confidence 12347788887755 469999988884 777776665543222
Q ss_pred cccCCCcEEEechhhhhcc
Q 001840 428 VELAKYDVVLTTYSIVTNE 446 (1007)
Q Consensus 428 ~~l~~~dVVItSy~~l~~~ 446 (1007)
...-..||+-+|-..+.-+
T Consensus 162 ~~~Y~~dI~Y~t~~~~~fD 180 (266)
T PF07517_consen 162 REAYAADIVYGTNSEFGFD 180 (266)
T ss_dssp HHHHHSSEEEEEHHHHHHH
T ss_pred HHHHhCcccccccchhhHH
Confidence 3334568888877666543
No 201
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.61 E-value=0.011 Score=46.62 Aligned_cols=48 Identities=33% Similarity=0.833 Sum_probs=41.5
Q ss_pred ccccccccCCCCCCccccccCcc-cchhhhhhhccCCCCCCCCcchhhccc
Q 001840 717 SSAICCVCSDPPEDSVVTMCGHV-FCYQCASEYITGDDNMCPAPRCKEQLG 766 (1007)
Q Consensus 717 ~~~~C~~c~d~~~~~v~t~CgH~-~c~~ci~~~~~~~~~~cp~~~cr~~l~ 766 (1007)
.+.+|-+|.+.+.+.|+-.|||. .|+.|--..+++....|| .||..+.
T Consensus 6 ~~dECTICye~pvdsVlYtCGHMCmCy~Cg~rl~~~~~g~CP--iCRapi~ 54 (62)
T KOG4172|consen 6 WSDECTICYEHPVDSVLYTCGHMCMCYACGLRLKKALHGCCP--ICRAPIK 54 (62)
T ss_pred cccceeeeccCcchHHHHHcchHHhHHHHHHHHHHccCCcCc--chhhHHH
Confidence 34789999999999999999998 899998888888777888 6877664
No 202
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=94.20 E-value=0.34 Score=59.59 Aligned_cols=82 Identities=12% Similarity=0.128 Sum_probs=47.8
Q ss_pred eEEEEecchhHHHHHHHHHhhc-------CCeEEEecCCCChHHHHHHHHhhcc---Cc---ccceeeeeccCccccccc
Q 001840 854 KSIVFSQWTRMLDLVENSLNQH-------CIQYRRLDGTMSLPARDRAVKDFNT---DR---EITVMLMSLKAGNLGLNM 920 (1007)
Q Consensus 854 KvIIFsq~~~~ld~L~~~L~~~-------gi~~~~i~Gs~s~~~R~~~I~~F~~---~~---~~~VlLlStkagg~GLNL 920 (1007)
-+|||-..-.+++-+....... ++.-+.+ .--+..+=.+++.+|.+ ++ ....|.+.-...++||++
T Consensus 563 G~L~FfPSY~vmdk~~tfw~~~~~we~~~~vk~l~v-EPr~k~~f~e~m~~y~~~i~~pes~ga~~~aVcRGKVSEGlDF 641 (945)
T KOG1132|consen 563 GLLIFFPSYPVMDKLITFWQNRGLWERMEKVKKLVV-EPRSKSEFTEVMSRYYNAIADPESSGAVFFAVCRGKVSEGLDF 641 (945)
T ss_pred ceEEeccchHHHHHHHHHHHcchHHHHhhcccCcee-ccCCccchHHHHHHHHHHhhCccccceEEEEEecccccCCCCc
Confidence 5788888777888775555443 2222222 11233344456666654 11 122333344567899999
Q ss_pred cc--CCEEEEecCCCCCC
Q 001840 921 VA--ASHVILLDLWWNPT 936 (1007)
Q Consensus 921 ~~--A~~VI~~Dp~WNp~ 936 (1007)
.+ +..||...+|+=|.
T Consensus 642 sD~~~RaVI~tGlPyP~~ 659 (945)
T KOG1132|consen 642 SDDNGRAVIITGLPYPPV 659 (945)
T ss_pred cccCCceeEEecCCCCCC
Confidence 87 66789888887443
No 203
>PRK14873 primosome assembly protein PriA; Provisional
Probab=94.19 E-value=0.2 Score=61.92 Aligned_cols=57 Identities=28% Similarity=0.269 Sum_probs=42.0
Q ss_pred CceEEEcChh-hHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCc------cccCCCcEEEechhhhh
Q 001840 385 AGTLVVCPAS-VLRQWARELEDKVPDKAALSVLIYHGGSRTKDP------VELAKYDVVLTTYSIVT 444 (1007)
Q Consensus 385 ~~tLIV~P~s-Ll~QW~~Ei~k~~~~~~~l~vlv~~g~~r~~~~------~~l~~~dVVItSy~~l~ 444 (1007)
+.+||++|.. +..|+..-|++.++ ...|.+||+....... ...++..|||=|.+.+.
T Consensus 189 k~vLvLvPEi~lt~q~~~rl~~~f~---~~~v~~lhS~l~~~~R~~~w~~~~~G~~~IViGtRSAvF 252 (665)
T PRK14873 189 RGALVVVPDQRDVDRLEAALRALLG---AGDVAVLSAGLGPADRYRRWLAVLRGQARVVVGTRSAVF 252 (665)
T ss_pred CeEEEEecchhhHHHHHHHHHHHcC---CCcEEEECCCCCHHHHHHHHHHHhCCCCcEEEEcceeEE
Confidence 4489999965 88999999999986 3468888886643321 12356789998887764
No 204
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=94.11 E-value=0.27 Score=63.24 Aligned_cols=45 Identities=18% Similarity=0.183 Sum_probs=30.5
Q ss_pred cccCchHHHHHHHHHHHhhhcCCCccCceeecCCCCchHHHHHHHHHh
Q 001840 272 SVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQM 319 (1007)
Q Consensus 272 ~~~LrpyQ~~~v~wml~~e~~~~~~~GGILADdmGLGKTiqaIali~~ 319 (1007)
..+.||+|.+.+..+.+..... .-+++--.+|.|||+..+.-+..
T Consensus 243 ~~~~r~~Q~~~~~~i~~~~~~~---~~~~~eA~TG~GKT~ayLlp~~~ 287 (850)
T TIGR01407 243 GLEYRPEQLKLAELVLDQLTHS---EKSLIEAPTGTGKTLGYLLPALY 287 (850)
T ss_pred CCccCHHHHHHHHHHHHHhccC---CcEEEECCCCCchhHHHHHHHHH
Confidence 4578999998777665544322 22455669999999987665533
No 205
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=93.29 E-value=0.5 Score=61.24 Aligned_cols=43 Identities=14% Similarity=0.171 Sum_probs=27.8
Q ss_pred cccCchHHHHHHHHHHHhhhcCCCccCceeecCCCCchHHHHHHHH
Q 001840 272 SVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALI 317 (1007)
Q Consensus 272 ~~~LrpyQ~~~v~wml~~e~~~~~~~GGILADdmGLGKTiqaIali 317 (1007)
.++.||-|.+-...+.+......+ .++=-.+|+|||+-.+.-+
T Consensus 255 ~~e~R~~Q~~m~~~v~~~l~~~~~---~~iEA~TGtGKTlaYLlpa 297 (928)
T PRK08074 255 KYEKREGQQEMMKEVYTALRDSEH---ALIEAGTGTGKSLAYLLPA 297 (928)
T ss_pred CCcCCHHHHHHHHHHHHHHhcCCC---EEEECCCCCchhHHHHHHH
Confidence 347899999866655544332211 3445589999999776444
No 206
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.06 E-value=0.057 Score=57.33 Aligned_cols=48 Identities=38% Similarity=0.879 Sum_probs=36.4
Q ss_pred cccccccccCCCCCCcccc-ccCcccchhhhhhhcc-CCCCCCCCcchhhcc
Q 001840 716 TSSAICCVCSDPPEDSVVT-MCGHVFCYQCASEYIT-GDDNMCPAPRCKEQL 765 (1007)
Q Consensus 716 ~~~~~C~~c~d~~~~~v~t-~CgH~~c~~ci~~~~~-~~~~~cp~~~cr~~l 765 (1007)
+++-+|++|.+.|..|.+. .|+|++|+-|+..-.. ..-..|| .|.+..
T Consensus 237 t~~~~C~~Cg~~PtiP~~~~~C~HiyCY~Ci~ts~~~~asf~Cp--~Cg~~~ 286 (298)
T KOG2879|consen 237 TSDTECPVCGEPPTIPHVIGKCGHIYCYYCIATSRLWDASFTCP--LCGENV 286 (298)
T ss_pred cCCceeeccCCCCCCCeeeccccceeehhhhhhhhcchhhcccC--ccCCCC
Confidence 5678999999999888555 5999999999986544 3456787 565543
No 207
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=92.98 E-value=0.68 Score=57.91 Aligned_cols=99 Identities=21% Similarity=0.208 Sum_probs=74.8
Q ss_pred eEEEEecchhHHHHHHHHHhhcCCe-EEEecCCCChHHHHHHHHhhccCcccceeeeeccCccccccccc--CCEEEEec
Q 001840 854 KSIVFSQWTRMLDLVENSLNQHCIQ-YRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVA--ASHVILLD 930 (1007)
Q Consensus 854 KvIIFsq~~~~ld~L~~~L~~~gi~-~~~i~Gs~s~~~R~~~I~~F~~~~~~~VlLlStkagg~GLNL~~--A~~VI~~D 930 (1007)
++|||...-.++..+...|...... .+...|.. .+.++++.|....+. .+++.+...+||+|+.. ...||+.-
T Consensus 481 ~~lvlF~Sy~~l~~~~~~~~~~~~~~~v~~q~~~---~~~~~l~~f~~~~~~-~~lv~~gsf~EGVD~~g~~l~~vvI~~ 556 (654)
T COG1199 481 GVLVLFPSYEYLKRVAERLKDERSTLPVLTQGED---EREELLEKFKASGEG-LILVGGGSFWEGVDFPGDALRLVVIVG 556 (654)
T ss_pred CEEEEeccHHHHHHHHHHHhhcCccceeeecCCC---cHHHHHHHHHHhcCC-eEEEeeccccCcccCCCCCeeEEEEEe
Confidence 8899999999999999999887653 33444443 455899999986544 56667799999999998 57788888
Q ss_pred CCCC-CC-----------------------------hhHHHhHhhhccCCcccEEE
Q 001840 931 LWWN-PT-----------------------------TEDQAVDRAHRIGQTRPVTV 956 (1007)
Q Consensus 931 p~WN-p~-----------------------------~e~QaigRi~RiGQ~k~V~V 956 (1007)
.||= |. ...|++||+.|--+.+-|.|
T Consensus 557 lPfp~p~dp~~~~r~~~~~~~g~~~f~~~~l~~A~~~l~QavGRlIR~~~D~G~iv 612 (654)
T COG1199 557 LPFPNPDDPLLKARLEFLKRLGGDPFEEFYLPPAVIKLRQAVGRLIRSEDDRGVIV 612 (654)
T ss_pred cCCCCCCCHHHHHHHHHHHHhcCCCceEeehHHHHHHHHHhhccccccCCCceEEE
Confidence 8874 22 44599999999555565554
No 208
>smart00492 HELICc3 helicase superfamily c-terminal domain.
Probab=92.65 E-value=0.64 Score=45.96 Aligned_cols=68 Identities=12% Similarity=0.138 Sum_probs=43.2
Q ss_pred HHHHHHHHHhhcCC-------eEEEecCCCChHHHHHHHHhhccCcccceeeeeccCccccccccc--CCEEEEecCCC
Q 001840 864 MLDLVENSLNQHCI-------QYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVA--ASHVILLDLWW 933 (1007)
Q Consensus 864 ~ld~L~~~L~~~gi-------~~~~i~Gs~s~~~R~~~I~~F~~~~~~~VlLlStkagg~GLNL~~--A~~VI~~Dp~W 933 (1007)
.++.+...+...+. ..+.+-| ....+..+++++|....+..| |+++...++|+|+.. +..||+.-+|+
T Consensus 3 ~m~~v~~~~~~~~~~~~l~~~~~i~~e~-~~~~~~~~~l~~f~~~~~~~i-L~~~~~~~EGiD~~g~~~r~vii~glPf 79 (141)
T smart00492 3 YMESFVQYWKENGILENINKNLLLLVQG-EDGKETGKLLEKYVEACENAI-LLATARFSEGVDFPGDYLRAVIIDGLPF 79 (141)
T ss_pred HHHHHHHHHHHcCchhhHhcCCeEEEeC-CChhHHHHHHHHHHHcCCCEE-EEEccceecceecCCCCeeEEEEEecCC
Confidence 34455555555543 2334444 334467899999997533234 456666999999997 56688887665
No 209
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=92.51 E-value=0.79 Score=57.50 Aligned_cols=96 Identities=24% Similarity=0.287 Sum_probs=65.5
Q ss_pred eEEEEecchhHHHHHHHHHhhc-CCeEEEecCCCChHHHHHHHHhhccC---cccceeeeeccCccccccccc--CCEEE
Q 001840 854 KSIVFSQWTRMLDLVENSLNQH-CIQYRRLDGTMSLPARDRAVKDFNTD---REITVMLMSLKAGNLGLNMVA--ASHVI 927 (1007)
Q Consensus 854 KvIIFsq~~~~ld~L~~~L~~~-gi~~~~i~Gs~s~~~R~~~I~~F~~~---~~~~VlLlStkagg~GLNL~~--A~~VI 927 (1007)
+++||.....+++.+...|... ++. +.+.|. ..|.+++++|.+. .+..||+ .+.+..+|+++.. ...||
T Consensus 536 g~LVlFtSy~~l~~v~~~l~~~~~~~-ll~Q~~---~~~~~ll~~f~~~~~~~~~~VL~-g~~sf~EGVD~pGd~l~~vI 610 (697)
T PRK11747 536 GSLVLFASRRQMQKVADLLPRDLRLM-LLVQGD---QPRQRLLEKHKKRVDEGEGSVLF-GLQSFAEGLDLPGDYLTQVI 610 (697)
T ss_pred CEEEEeCcHHHHHHHHHHHHHhcCCc-EEEeCC---chHHHHHHHHHHHhccCCCeEEE-EeccccccccCCCCceEEEE
Confidence 5677777778888888888643 333 344554 3578899888742 2334555 4588999999987 67888
Q ss_pred EecCCC-CCC-----------------------------hhHHHhHhhhccCCcccE
Q 001840 928 LLDLWW-NPT-----------------------------TEDQAVDRAHRIGQTRPV 954 (1007)
Q Consensus 928 ~~Dp~W-Np~-----------------------------~e~QaigRi~RiGQ~k~V 954 (1007)
+.-+|+ +|. ...|++||+.|-.+.+-|
T Consensus 611 I~kLPF~~p~dp~~~ar~~~~~~~g~~~F~~~~lP~A~~kl~Qg~GRlIRs~~D~G~ 667 (697)
T PRK11747 611 ITKIPFAVPDSPVEATLAEWLKSRGGNPFMEISVPDASFKLIQAVGRLIRSEQDRGR 667 (697)
T ss_pred EEcCCCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhccccccCCceEE
Confidence 888776 342 223788888887666554
No 210
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=92.42 E-value=0.75 Score=57.95 Aligned_cols=102 Identities=15% Similarity=0.188 Sum_probs=69.9
Q ss_pred eEEEEecchhHHHHHHHHHhhcCC-------eEEEecCCCChHHHHHHHHhhccC--cccceeeeec--cCccccccccc
Q 001840 854 KSIVFSQWTRMLDLVENSLNQHCI-------QYRRLDGTMSLPARDRAVKDFNTD--REITVMLMSL--KAGNLGLNMVA 922 (1007)
Q Consensus 854 KvIIFsq~~~~ld~L~~~L~~~gi-------~~~~i~Gs~s~~~R~~~I~~F~~~--~~~~VlLlSt--kagg~GLNL~~ 922 (1007)
.+|||-..-..++.+...+...|+ ..+.+.+.. ..++++++++|... ..-.-+|++. ...+||+|+..
T Consensus 524 g~lvfFpSy~~l~~v~~~~~~~~~~~~i~~~k~i~~E~~~-~~~~~~~l~~f~~~~~~~~gavL~av~gGk~sEGIDf~~ 602 (705)
T TIGR00604 524 GIVVFFPSYSYLENIVSTWKEMGILENIEKKKLIFVETKD-AQETSDALERYKQAVSEGRGAVLLSVAGGKVSEGIDFCD 602 (705)
T ss_pred cEEEEccCHHHHHHHHHHHHhcCHHHHHhcCCCEEEeCCC-cchHHHHHHHHHHHHhcCCceEEEEecCCcccCccccCC
Confidence 788988888888888877765432 223344432 25789999999752 1112244454 57889999998
Q ss_pred --CCEEEEecCCC-CCC------------------------------hhHHHhHhhhccCCcccEEE
Q 001840 923 --ASHVILLDLWW-NPT------------------------------TEDQAVDRAHRIGQTRPVTV 956 (1007)
Q Consensus 923 --A~~VI~~Dp~W-Np~------------------------------~e~QaigRi~RiGQ~k~V~V 956 (1007)
+..||++-+|+ ||. ...||+||+.|--+-+-+.|
T Consensus 603 ~~~r~ViivGlPf~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~a~~~v~QaiGR~IR~~~D~G~ii 669 (705)
T TIGR00604 603 DLGRAVIMVGIPYEYTESRILLARLEFLRDQYPIRENQDFYEFDAMRAVNQAIGRVIRHKDDYGSIV 669 (705)
T ss_pred CCCcEEEEEccCCCCCCCHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHhCccccCcCceEEEE
Confidence 77899999887 543 23499999999776665543
No 211
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=92.24 E-value=0.91 Score=56.26 Aligned_cols=41 Identities=29% Similarity=0.378 Sum_probs=31.6
Q ss_pred ccCchHHHHHHHHHHHhhhcCCCccCceeecCCCCchHHHHHHHHHh
Q 001840 273 VNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQM 319 (1007)
Q Consensus 273 ~~LrpyQ~~~v~wml~~e~~~~~~~GGILADdmGLGKTiqaIali~~ 319 (1007)
..|-+.|+.+|.+.+.... -.++--..|.|||.++++++..
T Consensus 156 ~~ln~~Q~~Av~~~l~~~~------~~lI~GpPGTGKT~t~~~ii~~ 196 (637)
T TIGR00376 156 PNLNESQKEAVSFALSSKD------LFLIHGPPGTGKTRTLVELIRQ 196 (637)
T ss_pred CCCCHHHHHHHHHHhcCCC------eEEEEcCCCCCHHHHHHHHHHH
Confidence 4688999999999874321 1477788999999988888754
No 212
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.22 E-value=0.06 Score=57.67 Aligned_cols=48 Identities=25% Similarity=0.652 Sum_probs=39.9
Q ss_pred ccccccccCCCC---CCccccccCcccchhhhhhhccCCCCCCCCcchhhccc
Q 001840 717 SSAICCVCSDPP---EDSVVTMCGHVFCYQCASEYITGDDNMCPAPRCKEQLG 766 (1007)
Q Consensus 717 ~~~~C~~c~d~~---~~~v~t~CgH~~c~~ci~~~~~~~~~~cp~~~cr~~l~ 766 (1007)
...+|.+|.... +.-++++|.|.|-..|+.+|+.+-...|| .|++++.
T Consensus 322 ~GveCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~~~y~~~CP--vCrt~iP 372 (374)
T COG5540 322 KGVECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLGYSNKCP--VCRTAIP 372 (374)
T ss_pred CCceEEEEhhhhcccceEEEeccCceechhHHHHHHhhhcccCC--ccCCCCC
Confidence 346899998653 33589999999999999999999999999 5887764
No 213
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=92.21 E-value=1.1 Score=47.03 Aligned_cols=39 Identities=28% Similarity=0.290 Sum_probs=27.5
Q ss_pred cCchHHHHHHHHHHHhhhcCCCccCceeecCCCCchHHHHHHHH
Q 001840 274 NLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALI 317 (1007)
Q Consensus 274 ~LrpyQ~~~v~wml~~e~~~~~~~GGILADdmGLGKTiqaIali 317 (1007)
+|-+.|+.++..++.... +-.+|.=..|.|||...-.++
T Consensus 1 ~L~~~Q~~a~~~~l~~~~-----~~~~l~G~aGtGKT~~l~~~~ 39 (196)
T PF13604_consen 1 TLNEEQREAVRAILTSGD-----RVSVLQGPAGTGKTTLLKALA 39 (196)
T ss_dssp -S-HHHHHHHHHHHHCTC-----SEEEEEESTTSTHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhcCC-----eEEEEEECCCCCHHHHHHHHH
Confidence 377899999999985432 124677789999998665554
No 214
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=92.12 E-value=0.073 Score=58.82 Aligned_cols=51 Identities=24% Similarity=0.799 Sum_probs=41.4
Q ss_pred cccccccccccCCCCCCccccccCcccchhhhhhhccCC-CCCCCCcchhhccc
Q 001840 714 LETSSAICCVCSDPPEDSVVTMCGHVFCYQCASEYITGD-DNMCPAPRCKEQLG 766 (1007)
Q Consensus 714 le~~~~~C~~c~d~~~~~v~t~CgH~~c~~ci~~~~~~~-~~~cp~~~cr~~l~ 766 (1007)
..+.-..|-||.+...+.-+..|||..|..|+..|-..+ +..||. ||.+|+
T Consensus 365 MgsTFeLCKICaendKdvkIEPCGHLlCt~CLa~WQ~sd~gq~CPF--CRcEIK 416 (563)
T KOG1785|consen 365 MGSTFELCKICAENDKDVKIEPCGHLLCTSCLAAWQDSDEGQTCPF--CRCEIK 416 (563)
T ss_pred ccchHHHHHHhhccCCCcccccccchHHHHHHHhhcccCCCCCCCc--eeeEec
Confidence 334456799999999999999999999999999998666 778995 554544
No 215
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.00 E-value=0.02 Score=62.74 Aligned_cols=49 Identities=27% Similarity=0.730 Sum_probs=40.4
Q ss_pred ccccccccCCCCCCc-cccccCcccchhhhhhhccCCCCCCCCcchhhcccc
Q 001840 717 SSAICCVCSDPPEDS-VVTMCGHVFCYQCASEYITGDDNMCPAPRCKEQLGA 767 (1007)
Q Consensus 717 ~~~~C~~c~d~~~~~-v~t~CgH~~c~~ci~~~~~~~~~~cp~~~cr~~l~~ 767 (1007)
....|++|++..... ....|+|.||.+||..-+...++.|| .||..+..
T Consensus 42 ~~v~c~icl~llk~tmttkeClhrfc~~ci~~a~r~gn~ecp--tcRk~l~S 91 (381)
T KOG0311|consen 42 IQVICPICLSLLKKTMTTKECLHRFCFDCIWKALRSGNNECP--TCRKKLVS 91 (381)
T ss_pred hhhccHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcCCCCc--hHHhhccc
Confidence 467899999877655 45589999999999999999999999 78876543
No 216
>KOG1131 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 5'-3' helicase subunit RAD3 [Transcription; Replication, recombination and repair]
Probab=91.95 E-value=1.2 Score=51.77 Aligned_cols=44 Identities=25% Similarity=0.360 Sum_probs=31.1
Q ss_pred CchHHHHHHHHHHHhhhcCCCcc-CceeecCCCCchHHHHHHHHHhhcc
Q 001840 275 LLKHQKIALAWMLQKETRSLHCL-GGILADDQGLGKTISIIALIQMQRS 322 (1007)
Q Consensus 275 LrpyQ~~~v~wml~~e~~~~~~~-GGILADdmGLGKTiqaIali~~~~~ 322 (1007)
.+|.| +.+|....+. +..+ -|+|--.-|.|||+.-+++|.....
T Consensus 17 iYPEQ---~~YM~elKrs-LDakGh~llEMPSGTGKTvsLLSli~aYq~ 61 (755)
T KOG1131|consen 17 IYPEQ---YEYMRELKRS-LDAKGHCLLEMPSGTGKTVSLLSLIIAYQL 61 (755)
T ss_pred cCHHH---HHHHHHHHHh-hccCCcEEEECCCCCCcchHHHHHHHHHHH
Confidence 56777 4577655433 2222 3799999999999999999876543
No 217
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]
Probab=91.92 E-value=0.44 Score=55.48 Aligned_cols=117 Identities=17% Similarity=0.149 Sum_probs=90.0
Q ss_pred cchhhHHHHHHHHHhhhhcccccchhhhhhcccCCCCCccccCCCCCCCCeEEEEecchhHHHHHHHHHhhc----CC--
Q 001840 804 YISSKIRTVLDILHTQCELNTKCSIVEIHDLAGSNGSSAVHSKSPIEGPIKSIVFSQWTRMLDLVENSLNQH----CI-- 877 (1007)
Q Consensus 804 ~~SsKl~~l~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvIIFsq~~~~ld~L~~~L~~~----gi-- 877 (1007)
..++|+.....++.++...+- +.|-||....+.+++-...+.. +-
T Consensus 506 ~~~~~i~E~s~~~~~~i~~~~-----------------------------R~IAFC~~R~~CEL~~~~~R~I~~ET~~~L 556 (1034)
T KOG4150|consen 506 EKSSKVVEVSHLFAEMVQHGL-----------------------------RCIAFCPSRKLCELVLCLTREILAETAPHL 556 (1034)
T ss_pred hhhhHHHHHHHHHHHHHHcCC-----------------------------cEEEeccHHHHHHHHHHHHHHHHHHhhHHH
Confidence 357888888888888877665 9999999998877665443322 21
Q ss_pred --eEEEecCCCChHHHHHHHHhhccCcccceeeeeccCcccccccccCCEEEEecCCCCCChhHHHhHhhhccCCc
Q 001840 878 --QYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQT 951 (1007)
Q Consensus 878 --~~~~i~Gs~s~~~R~~~I~~F~~~~~~~VlLlStkagg~GLNL~~A~~VI~~Dp~WNp~~e~QaigRi~RiGQ~ 951 (1007)
.+..+.|+-..++|.++-.+.-.+ .. .-+++|.|+..|+++-.-+.|+++..|..-+...|..||++|-...
T Consensus 557 V~~i~SYRGGY~A~DRRKIE~~~F~G-~L-~giIaTNALELGIDIG~LDAVl~~GFP~S~aNl~QQ~GRAGRRNk~ 630 (1034)
T KOG4150|consen 557 VEAITSYRGGYIAEDRRKIESDLFGG-KL-CGIIATNALELGIDIGHLDAVLHLGFPGSIANLWQQAGRAGRRNKP 630 (1034)
T ss_pred HHHHHhhcCccchhhHHHHHHHhhCC-ee-eEEEecchhhhccccccceeEEEccCchhHHHHHHHhccccccCCC
Confidence 134567888888988876663322 22 3466889999999999999999999999999999999999996543
No 218
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=91.87 E-value=0.055 Score=54.31 Aligned_cols=36 Identities=42% Similarity=0.887 Sum_probs=29.5
Q ss_pred cccccccccCCCCCCccccccCcccchhhhh-hhccC
Q 001840 716 TSSAICCVCSDPPEDSVVTMCGHVFCYQCAS-EYITG 751 (1007)
Q Consensus 716 ~~~~~C~~c~d~~~~~v~t~CgH~~c~~ci~-~~~~~ 751 (1007)
.....|.+|-...+.||++.|||.||..|.. .|-.+
T Consensus 194 ~IPF~C~iCKkdy~spvvt~CGH~FC~~Cai~~y~kg 230 (259)
T COG5152 194 KIPFLCGICKKDYESPVVTECGHSFCSLCAIRKYQKG 230 (259)
T ss_pred CCceeehhchhhccchhhhhcchhHHHHHHHHHhccC
Confidence 3455799999999999999999999999954 44443
No 219
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=91.09 E-value=0.11 Score=61.41 Aligned_cols=44 Identities=27% Similarity=0.433 Sum_probs=33.5
Q ss_pred ccccCchHHHHHHHHHHHhhhcCCCccCceeecCCCCchHHHHHHHHHhh
Q 001840 271 LSVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQ 320 (1007)
Q Consensus 271 ~~~~LrpyQ~~~v~wml~~e~~~~~~~GGILADdmGLGKTiqaIali~~~ 320 (1007)
....|-+-|+.|+.+..... .+ -++=-..|.|||.+..-+|...
T Consensus 182 ~~~~ln~SQk~Av~~~~~~k--~l----~~I~GPPGTGKT~TlvEiI~ql 225 (649)
T KOG1803|consen 182 FNKNLNSSQKAAVSFAINNK--DL----LIIHGPPGTGKTRTLVEIISQL 225 (649)
T ss_pred CCccccHHHHHHHHHHhccC--Cc----eEeeCCCCCCceeeHHHHHHHH
Confidence 34568899999999988653 12 3667789999999888877553
No 220
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=90.87 E-value=0.79 Score=52.65 Aligned_cols=21 Identities=24% Similarity=0.439 Sum_probs=16.1
Q ss_pred eeecCCCCchHHHHHHHHHhh
Q 001840 300 ILADDQGLGKTISIIALIQMQ 320 (1007)
Q Consensus 300 ILADdmGLGKTiqaIali~~~ 320 (1007)
|+-=..|.|||+.++.++...
T Consensus 5 ~I~G~aGTGKTvla~~l~~~l 25 (352)
T PF09848_consen 5 LITGGAGTGKTVLALNLAKEL 25 (352)
T ss_pred EEEecCCcCHHHHHHHHHHHh
Confidence 344457999999999988654
No 221
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=90.65 E-value=8 Score=49.64 Aligned_cols=58 Identities=12% Similarity=0.086 Sum_probs=38.3
Q ss_pred HHHHhhccC---cccceeeeeccCcccccccccCCEEEEecCCCCCChhHHHhHhhhccCCccc
Q 001840 893 RAVKDFNTD---REITVMLMSLKAGNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRP 953 (1007)
Q Consensus 893 ~~I~~F~~~---~~~~VlLlStkagg~GLNL~~A~~VI~~Dp~WNp~~e~QaigRi~RiGQ~k~ 953 (1007)
..|+.+-.. ....+++++|.+.-.|+++- ++.+| -|+. .-....|+.||+.|-|+...
T Consensus 824 ~~i~~~l~~~~~~~~~~i~v~Tqv~E~g~D~d-fd~~~-~~~~-~~~sliQ~aGR~~R~~~~~~ 884 (1110)
T TIGR02562 824 DEIIDLMQNSPALNHLFIVLATPVEEVGRDHD-YDWAI-ADPS-SMRSIIQLAGRVNRHRLEKV 884 (1110)
T ss_pred HHHHHHHhcccccCCCeEEEEeeeEEEEeccc-CCeee-eccC-cHHHHHHHhhcccccccCCC
Confidence 344444432 24567888999999999875 33333 2332 23467899999999998643
No 222
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=90.60 E-value=0.097 Score=58.45 Aligned_cols=43 Identities=28% Similarity=0.724 Sum_probs=36.5
Q ss_pred ccccccccCCCCCCccccccCcccchhhhhhhccCCCCCCCCcchh
Q 001840 717 SSAICCVCSDPPEDSVVTMCGHVFCYQCASEYITGDDNMCPAPRCK 762 (1007)
Q Consensus 717 ~~~~C~~c~d~~~~~v~t~CgH~~c~~ci~~~~~~~~~~cp~~~cr 762 (1007)
....|++|++....|.+..|+|.||..|+..++. ....|| .|+
T Consensus 12 ~~~~C~iC~~~~~~p~~l~C~H~~c~~C~~~~~~-~~~~Cp--~cr 54 (386)
T KOG2177|consen 12 EELTCPICLEYFREPVLLPCGHNFCRACLTRSWE-GPLSCP--VCR 54 (386)
T ss_pred ccccChhhHHHhhcCccccccchHhHHHHHHhcC-CCcCCc--ccC
Confidence 4568999999999999999999999999999888 445666 676
No 223
>smart00491 HELICc2 helicase superfamily c-terminal domain.
Probab=90.43 E-value=1.1 Score=44.27 Aligned_cols=69 Identities=13% Similarity=0.238 Sum_probs=42.3
Q ss_pred HHHHHHHHHhhcCC----eEEEecCCCChHHHHHHHHhhccCcc-cceeeeeccC--ccccccccc--CCEEEEecCCC
Q 001840 864 MLDLVENSLNQHCI----QYRRLDGTMSLPARDRAVKDFNTDRE-ITVMLMSLKA--GNLGLNMVA--ASHVILLDLWW 933 (1007)
Q Consensus 864 ~ld~L~~~L~~~gi----~~~~i~Gs~s~~~R~~~I~~F~~~~~-~~VlLlStka--gg~GLNL~~--A~~VI~~Dp~W 933 (1007)
.++.+...++..++ .-+.+.+.. ..+..+++++|++..+ ..-+|+++.. .+||+||.. +..||+.-+|+
T Consensus 3 ~m~~v~~~~~~~~~~~~~~~i~~e~~~-~~~~~~~l~~f~~~~~~~g~iL~~v~~G~~~EGiD~~g~~~r~vii~glPf 80 (142)
T smart00491 3 YLEQVVEYWKENGILEINKPVFIEGKD-SGETEELLEKYSAACEARGALLLAVARGKVSEGIDFPDDLGRAVIIVGIPF 80 (142)
T ss_pred HHHHHHHHHHhcCccccCceEEEECCC-CchHHHHHHHHHHhcCCCCEEEEEEeCCeeecceecCCCccEEEEEEecCC
Confidence 45555666665543 223444543 2355789999996422 0134444444 799999998 66788888775
No 224
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=90.38 E-value=0.12 Score=54.97 Aligned_cols=41 Identities=32% Similarity=0.719 Sum_probs=36.2
Q ss_pred cccccccCCCCCCcccc-ccCcccchhhhhhhccCCCCCCCC
Q 001840 718 SAICCVCSDPPEDSVVT-MCGHVFCYQCASEYITGDDNMCPA 758 (1007)
Q Consensus 718 ~~~C~~c~d~~~~~v~t-~CgH~~c~~ci~~~~~~~~~~cp~ 758 (1007)
...|+.|......|+-| +|+|.||.+|+...+-..+..||.
T Consensus 274 ~LkCplc~~Llrnp~kT~cC~~~fc~eci~~al~dsDf~Cpn 315 (427)
T COG5222 274 SLKCPLCHCLLRNPMKTPCCGHTFCDECIGTALLDSDFKCPN 315 (427)
T ss_pred cccCcchhhhhhCcccCccccchHHHHHHhhhhhhccccCCC
Confidence 35799999999999888 899999999999888888889984
No 225
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=89.91 E-value=2.3 Score=54.31 Aligned_cols=43 Identities=12% Similarity=0.122 Sum_probs=27.8
Q ss_pred cccCchHHHHHHHHHHHhhhcCCCccCceeecCCCCchHHHHHHHH
Q 001840 272 SVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALI 317 (1007)
Q Consensus 272 ~~~LrpyQ~~~v~wml~~e~~~~~~~GGILADdmGLGKTiqaIali 317 (1007)
.++.||-|.+-...+.+......+ .++--.+|.|||+..+.-+
T Consensus 243 ~~e~R~~Q~~ma~~V~~~l~~~~~---~~~eA~tGtGKT~ayllp~ 285 (820)
T PRK07246 243 GLEERPKQESFAKLVGEDFHDGPA---SFIEAQTGIGKTYGYLLPL 285 (820)
T ss_pred CCccCHHHHHHHHHHHHHHhCCCc---EEEECCCCCcHHHHHHHHH
Confidence 357999999855555543332211 3556689999998766544
No 226
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=89.85 E-value=0.15 Score=58.50 Aligned_cols=48 Identities=40% Similarity=0.922 Sum_probs=39.5
Q ss_pred ccccccccCCCCCCccccccCcccchhhhhhhccCCCCCCCCcchhhcccc
Q 001840 717 SSAICCVCSDPPEDSVVTMCGHVFCYQCASEYITGDDNMCPAPRCKEQLGA 767 (1007)
Q Consensus 717 ~~~~C~~c~d~~~~~v~t~CgH~~c~~ci~~~~~~~~~~cp~~~cr~~l~~ 767 (1007)
+..+|++|......|+.+.|||.||..|+...++ ....|| .|+..+..
T Consensus 83 sef~c~vc~~~l~~pv~tpcghs~c~~Cl~r~ld-~~~~cp--~Cr~~l~e 130 (398)
T KOG4159|consen 83 SEFECCVCSRALYPPVVTPCGHSFCLECLDRSLD-QETECP--LCRDELVE 130 (398)
T ss_pred chhhhhhhHhhcCCCccccccccccHHHHHHHhc-cCCCCc--cccccccc
Confidence 5678999999999999999999999999888554 455676 58877654
No 227
>PHA02533 17 large terminase protein; Provisional
Probab=89.53 E-value=3.5 Score=49.93 Aligned_cols=41 Identities=22% Similarity=0.216 Sum_probs=28.9
Q ss_pred cccCchHHHHHHHHHHHhhhcCCCccCceeecCCCCchHHHHHHHHHh
Q 001840 272 SVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQM 319 (1007)
Q Consensus 272 ~~~LrpyQ~~~v~wml~~e~~~~~~~GGILADdmGLGKTiqaIali~~ 319 (1007)
.+.|.|+|+.-+.+|.... . .++.=.=..|||..+.++++.
T Consensus 57 Pf~L~p~Q~~i~~~~~~~R---~----~ii~~aRq~GKStl~a~~al~ 97 (534)
T PHA02533 57 KVQMRDYQKDMLKIMHKNR---F----NACNLSRQLGKTTVVAIFLLH 97 (534)
T ss_pred ecCCcHHHHHHHHHHhcCe---E----EEEEEcCcCChHHHHHHHHHH
Confidence 4689999999888874211 1 255566689999988776654
No 228
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=89.36 E-value=0.22 Score=43.20 Aligned_cols=40 Identities=35% Similarity=0.975 Sum_probs=29.5
Q ss_pred cccccccCCCCCC-------------ccccccCcccchhhhhhhccCCCCCCCC
Q 001840 718 SAICCVCSDPPED-------------SVVTMCGHVFCYQCASEYITGDDNMCPA 758 (1007)
Q Consensus 718 ~~~C~~c~d~~~~-------------~v~t~CgH~~c~~ci~~~~~~~~~~cp~ 758 (1007)
...|.||.++..+ .+...|||.|...|+.+++.... .||.
T Consensus 19 ~d~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~~~-~CP~ 71 (73)
T PF12678_consen 19 DDNCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQNN-TCPL 71 (73)
T ss_dssp CSBETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTTSS-B-TT
T ss_pred CCcccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhcCC-cCCC
Confidence 4569999887632 24568999999999999996544 7773
No 229
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=89.00 E-value=2.3 Score=52.39 Aligned_cols=43 Identities=23% Similarity=0.155 Sum_probs=34.3
Q ss_pred cceeEEEEccCcccCCcccHHHHHHHhcccCcEEEEeccCCCCCh
Q 001840 510 VGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSI 554 (1007)
Q Consensus 510 ~~w~rVIlDEAH~iKN~~s~~~kal~~L~a~~r~lLTGTPi~N~l 554 (1007)
..+++||||||-.+-. ...++.+..+....|++|-|=|-|-..
T Consensus 264 l~~dvlIvDEaSMvd~--~lm~~ll~al~~~~rlIlvGD~~QL~s 306 (615)
T PRK10875 264 LHLDVLVVDEASMVDL--PMMARLIDALPPHARVIFLGDRDQLAS 306 (615)
T ss_pred CCCCeEEEChHhcccH--HHHHHHHHhcccCCEEEEecchhhcCC
Confidence 3468999999999853 466778888888999999998876543
No 230
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=88.99 E-value=2.2 Score=52.24 Aligned_cols=41 Identities=22% Similarity=0.155 Sum_probs=32.9
Q ss_pred ceeEEEEccCcccCCcccHHHHHHHhcccCcEEEEeccCCCCC
Q 001840 511 GWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNS 553 (1007)
Q Consensus 511 ~w~rVIlDEAH~iKN~~s~~~kal~~L~a~~r~lLTGTPi~N~ 553 (1007)
.+++||||||-.+-.. ...+.+..++...|++|.|=|-|=.
T Consensus 259 ~~dvlIiDEaSMvd~~--l~~~ll~al~~~~rlIlvGD~~QLp 299 (586)
T TIGR01447 259 PLDVLVVDEASMVDLP--LMAKLLKALPPNTKLILLGDKNQLP 299 (586)
T ss_pred cccEEEEcccccCCHH--HHHHHHHhcCCCCEEEEECChhhCC
Confidence 5789999999998643 5667777788889999999876654
No 231
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=88.74 E-value=0.69 Score=56.19 Aligned_cols=20 Identities=25% Similarity=0.444 Sum_probs=17.2
Q ss_pred ceeecCCCCchHHHHHHHHH
Q 001840 299 GILADDQGLGKTISIIALIQ 318 (1007)
Q Consensus 299 GILADdmGLGKTiqaIali~ 318 (1007)
.|+|-++|.|||-|.=-++.
T Consensus 274 vIIcGeTGsGKTTQvPQFLY 293 (1172)
T KOG0926|consen 274 VIICGETGSGKTTQVPQFLY 293 (1172)
T ss_pred EEEecCCCCCccccchHHHH
Confidence 69999999999999766663
No 232
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=88.67 E-value=0.2 Score=54.67 Aligned_cols=51 Identities=27% Similarity=0.695 Sum_probs=40.5
Q ss_pred cccccccccccCCCC-CCccccccCcccchhhhhhhccCCCCCCCCcchhhcc
Q 001840 714 LETSSAICCVCSDPP-EDSVVTMCGHVFCYQCASEYITGDDNMCPAPRCKEQL 765 (1007)
Q Consensus 714 le~~~~~C~~c~d~~-~~~v~t~CgH~~c~~ci~~~~~~~~~~cp~~~cr~~l 765 (1007)
+......|++|...- .+.+++.-|-+||+.|+-.|+. ....||+..|...+
T Consensus 296 l~~~~~~CpvClk~r~Nptvl~vSGyVfCY~Ci~~Yv~-~~~~CPVT~~p~~v 347 (357)
T KOG0826|consen 296 LPPDREVCPVCLKKRQNPTVLEVSGYVFCYPCIFSYVV-NYGHCPVTGYPASV 347 (357)
T ss_pred CCCccccChhHHhccCCCceEEecceEEeHHHHHHHHH-hcCCCCccCCcchH
Confidence 345677899998665 4557788899999999999998 66799988886543
No 233
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=87.65 E-value=3.6 Score=51.83 Aligned_cols=40 Identities=18% Similarity=0.152 Sum_probs=31.1
Q ss_pred eeEEEEccCcccCCcccHHHHHHHhcccCcEEEEeccCCCCC
Q 001840 512 WFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNS 553 (1007)
Q Consensus 512 w~rVIlDEAH~iKN~~s~~~kal~~L~a~~r~lLTGTPi~N~ 553 (1007)
.++||||||+.+-.. ...+.+..+....+++|-|=|-|-.
T Consensus 417 ~~llIvDEaSMvd~~--~~~~Ll~~~~~~~rlilvGD~~QLp 456 (720)
T TIGR01448 417 CDLLIVDESSMMDTW--LALSLLAALPDHARLLLVGDTDQLP 456 (720)
T ss_pred CCEEEEeccccCCHH--HHHHHHHhCCCCCEEEEECcccccc
Confidence 568999999999543 4566667777788999999876653
No 234
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=86.99 E-value=0.16 Score=55.69 Aligned_cols=47 Identities=28% Similarity=0.728 Sum_probs=37.1
Q ss_pred cccccccCCCCCCc-cccccCcccchhhhhhhccCCCCCCCCcchhhcccc
Q 001840 718 SAICCVCSDPPEDS-VVTMCGHVFCYQCASEYITGDDNMCPAPRCKEQLGA 767 (1007)
Q Consensus 718 ~~~C~~c~d~~~~~-v~t~CgH~~c~~ci~~~~~~~~~~cp~~~cr~~l~~ 767 (1007)
.-.|.+|.--..++ .++.|.|.||..||..++.. ...||. |...+..
T Consensus 15 ~itC~LC~GYliDATTI~eCLHTFCkSCivk~l~~-~~~CP~--C~i~ih~ 62 (331)
T KOG2660|consen 15 HITCRLCGGYLIDATTITECLHTFCKSCIVKYLEE-SKYCPT--CDIVIHK 62 (331)
T ss_pred ceehhhccceeecchhHHHHHHHHHHHHHHHHHHH-hccCCc--cceeccC
Confidence 35788998776664 79999999999999999987 778884 5555443
No 235
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=86.45 E-value=9.1 Score=44.95 Aligned_cols=109 Identities=17% Similarity=0.120 Sum_probs=85.8
Q ss_pred eEEEEecchhHHHHHHHHHhhcCCeEEEecCCCChHHHHHHHHhhccCcccceeeeeccCcc-cccccccCCEEEEecCC
Q 001840 854 KSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGN-LGLNMVAASHVILLDLW 932 (1007)
Q Consensus 854 KvIIFsq~~~~ld~L~~~L~~~gi~~~~i~Gs~s~~~R~~~I~~F~~~~~~~VlLlStkagg-~GLNL~~A~~VI~~Dp~ 932 (1007)
++|||...---.-.|...|++.++.++.++--++..+-.++-..|..+ +..+||.|-++-= .=..+..+.+||||.||
T Consensus 302 ~~LIfIPSYfDfVRlRN~lk~~~~sF~~i~EYts~~~isRAR~~F~~G-~~~iLL~TER~HFfrRy~irGi~~viFY~~P 380 (442)
T PF06862_consen 302 GTLIFIPSYFDFVRLRNYLKKENISFVQISEYTSNSDISRARSQFFHG-RKPILLYTERFHFFRRYRIRGIRHVIFYGPP 380 (442)
T ss_pred cEEEEecchhhhHHHHHHHHhcCCeEEEecccCCHHHHHHHHHHHHcC-CceEEEEEhHHhhhhhceecCCcEEEEECCC
Confidence 899998776666678889999999999999999999999999999976 7889999955421 22356679999999999
Q ss_pred CCCChhHHHhHhhhccCC----cccEEEEEEEeCC
Q 001840 933 WNPTTEDQAVDRAHRIGQ----TRPVTVTRLTIRD 963 (1007)
Q Consensus 933 WNp~~e~QaigRi~RiGQ----~k~V~VyrLi~~~ 963 (1007)
-+|.-+...+.-+..-.+ ..+..|.-|+++=
T Consensus 381 ~~p~fY~El~n~~~~~~~~~~~~~~~~~~~lysk~ 415 (442)
T PF06862_consen 381 ENPQFYSELLNMLDESSGGEVDAADATVTVLYSKY 415 (442)
T ss_pred CChhHHHHHHhhhcccccccccccCceEEEEecHh
Confidence 999988887765554443 3456666677663
No 236
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=85.77 E-value=0.37 Score=52.67 Aligned_cols=36 Identities=25% Similarity=0.736 Sum_probs=32.5
Q ss_pred cccccccccCCCCCCccccccCcccchhhhhhhccC
Q 001840 716 TSSAICCVCSDPPEDSVVTMCGHVFCYQCASEYITG 751 (1007)
Q Consensus 716 ~~~~~C~~c~d~~~~~v~t~CgH~~c~~ci~~~~~~ 751 (1007)
..+..|+||-..+..+|+++|+|-.|+.||.+++..
T Consensus 420 sEd~lCpICyA~pi~Avf~PC~H~SC~~CI~qHlmN 455 (489)
T KOG4692|consen 420 SEDNLCPICYAGPINAVFAPCSHRSCYGCITQHLMN 455 (489)
T ss_pred cccccCcceecccchhhccCCCCchHHHHHHHHHhc
Confidence 346789999999999999999999999999998764
No 237
>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities [].
Probab=85.52 E-value=3.3 Score=50.56 Aligned_cols=56 Identities=16% Similarity=0.106 Sum_probs=38.9
Q ss_pred ccccceeEEEEccCccc----CCcccHHHHHHHhc---ccCcEEEEeccCCCCChhHHHHHHH
Q 001840 507 LAKVGWFRVVLDEAQTI----KNHRTQVARACCSL---RAKRRWCLSGTPIQNSIDDLYSYFR 562 (1007)
Q Consensus 507 L~~~~w~rVIlDEAH~i----KN~~s~~~kal~~L---~a~~r~lLTGTPi~N~l~DL~sll~ 562 (1007)
|......+|++||...+ ++.......+.... ....++++..||.......++.++.
T Consensus 130 l~s~~~r~~~~DEvD~~p~~~~~eGdp~~la~~R~~tf~~~~K~~~~STPt~~~~~~I~~~~~ 192 (557)
T PF05876_consen 130 LRSRPARYLLLDEVDRYPDDVGGEGDPVELAEKRTKTFGSNRKILRISTPTIEGTSRIERLYE 192 (557)
T ss_pred cccCCcCEEEEechhhccccCccCCCHHHHHHHHHhhhccCcEEEEeCCCCCCCCCHHHHHHH
Confidence 66777889999999987 33444444444433 3568999999999886666655443
No 238
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=85.52 E-value=0.3 Score=50.65 Aligned_cols=51 Identities=24% Similarity=0.537 Sum_probs=40.7
Q ss_pred cccccccC-CCCCCc----ccc-ccCcccchhhhhhhccCCCCCCCCcchhhccccc
Q 001840 718 SAICCVCS-DPPEDS----VVT-MCGHVFCYQCASEYITGDDNMCPAPRCKEQLGAD 768 (1007)
Q Consensus 718 ~~~C~~c~-d~~~~~----v~t-~CgH~~c~~ci~~~~~~~~~~cp~~~cr~~l~~~ 768 (1007)
+..|++|. |.-..| .+. .|-|-.|..|+..+++.+...||.+.|...+...
T Consensus 10 d~~CPvCksDrYLnPdik~linPECyHrmCESCvdRIFs~GpAqCP~~gC~kILRK~ 66 (314)
T COG5220 10 DRRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIFSRGPAQCPYKGCGKILRKI 66 (314)
T ss_pred cccCCccccccccCCCeEEEECHHHHHHHHHHHHHHHhcCCCCCCCCccHHHHHHHh
Confidence 45799995 443333 344 4999999999999999999999999999887654
No 239
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=84.96 E-value=0.45 Score=53.32 Aligned_cols=48 Identities=27% Similarity=0.740 Sum_probs=38.8
Q ss_pred ccccccCCCCC---CccccccCcccchhhhhhhccCCCCCCCCcchhhccccc
Q 001840 719 AICCVCSDPPE---DSVVTMCGHVFCYQCASEYITGDDNMCPAPRCKEQLGAD 768 (1007)
Q Consensus 719 ~~C~~c~d~~~---~~v~t~CgH~~c~~ci~~~~~~~~~~cp~~~cr~~l~~~ 768 (1007)
..|+||+|..+ .-.+.+|.|.|-..||..|++..+..||. |+..+...
T Consensus 230 ~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~r~~CPv--CK~di~~~ 280 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQTRTFCPV--CKRDIRTD 280 (348)
T ss_pred ceEEEeecccccCCeeeEecCCCchhhccchhhHhhcCccCCC--CCCcCCCC
Confidence 58999998754 35778999999999999999998889995 55554443
No 240
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=84.74 E-value=0.4 Score=51.72 Aligned_cols=46 Identities=33% Similarity=0.609 Sum_probs=33.5
Q ss_pred ccccccccCCCCCCccccccCcccchhhhhhhccCCCCCCCCcchhhcc
Q 001840 717 SSAICCVCSDPPEDSVVTMCGHVFCYQCASEYITGDDNMCPAPRCKEQL 765 (1007)
Q Consensus 717 ~~~~C~~c~d~~~~~v~t~CgH~~c~~ci~~~~~~~~~~cp~~~cr~~l 765 (1007)
-...|.+|......||+|.|+|.||..|....+.. ...| ..|..++
T Consensus 240 ~Pf~c~icr~~f~~pVvt~c~h~fc~~ca~~~~qk-~~~c--~vC~~~t 285 (313)
T KOG1813|consen 240 LPFKCFICRKYFYRPVVTKCGHYFCEVCALKPYQK-GEKC--YVCSQQT 285 (313)
T ss_pred CCccccccccccccchhhcCCceeehhhhcccccc-CCcc--eeccccc
Confidence 34569999999999999999999999996654332 1233 3565544
No 241
>PRK04296 thymidine kinase; Provisional
Probab=83.26 E-value=2.8 Score=43.64 Aligned_cols=36 Identities=25% Similarity=0.122 Sum_probs=23.2
Q ss_pred ceeEEEEccCcccCCcccHHHHHHHhcc-cCcEEEEecc
Q 001840 511 GWFRVVLDEAQTIKNHRTQVARACCSLR-AKRRWCLSGT 548 (1007)
Q Consensus 511 ~w~rVIlDEAH~iKN~~s~~~kal~~L~-a~~r~lLTGT 548 (1007)
.+++|||||+|.+.. .+....+..++ ....+++||-
T Consensus 78 ~~dvviIDEaq~l~~--~~v~~l~~~l~~~g~~vi~tgl 114 (190)
T PRK04296 78 KIDCVLIDEAQFLDK--EQVVQLAEVLDDLGIPVICYGL 114 (190)
T ss_pred CCCEEEEEccccCCH--HHHHHHHHHHHHcCCeEEEEec
Confidence 367899999998743 23444555543 4456777763
No 242
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=82.10 E-value=1.9 Score=49.24 Aligned_cols=58 Identities=14% Similarity=0.198 Sum_probs=35.3
Q ss_pred eEEEcChh-hHHHHHHHHHHHc---CCCCCeEEEEEeCCCCCC--CccccCCCcEEEechhhhhcc
Q 001840 387 TLVVCPAS-VLRQWARELEDKV---PDKAALSVLIYHGGSRTK--DPVELAKYDVVLTTYSIVTNE 446 (1007)
Q Consensus 387 tLIV~P~s-Ll~QW~~Ei~k~~---~~~~~l~vlv~~g~~r~~--~~~~l~~~dVVItSy~~l~~~ 446 (1007)
.+|+||+- |..|-...|++.. +. .++++-...+.... ...-....||||+|...+-..
T Consensus 96 a~iLvPTkEL~qQvy~viekL~~~c~k--~lr~~nl~s~~sdsv~~~~L~d~pdIvV~TP~~ll~~ 159 (569)
T KOG0346|consen 96 AVILVPTKELAQQVYKVIEKLVEYCSK--DLRAINLASSMSDSVNSVALMDLPDIVVATPAKLLRH 159 (569)
T ss_pred eEEEechHHHHHHHHHHHHHHHHHHHH--hhhhhhhhcccchHHHHHHHccCCCeEEeChHHHHHH
Confidence 69999976 8888888887643 21 34444333222111 122346689999999877653
No 243
>PF06733 DEAD_2: DEAD_2; InterPro: IPR010614 This represents a conserved region within a number of RAD3-like DNA-binding helicases that are seemingly ubiquitous - members include proteins of eukaryotic, bacterial and archaeal origin. RAD3 is involved in nucleotide excision repair, and forms part of the transcription factor TFIIH in yeast [].; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 3CRV_A 3CRW_1 2VL7_A 4A15_A 2VSF_A.
Probab=81.55 E-value=0.59 Score=47.88 Aligned_cols=16 Identities=19% Similarity=0.434 Sum_probs=12.7
Q ss_pred cCCCcEEEechhhhhc
Q 001840 430 LAKYDVVLTTYSIVTN 445 (1007)
Q Consensus 430 l~~~dVVItSy~~l~~ 445 (1007)
...+||||++|..+-.
T Consensus 117 ~~~adivi~~y~yl~~ 132 (174)
T PF06733_consen 117 AKNADIVICNYNYLFD 132 (174)
T ss_dssp GGG-SEEEEETHHHHS
T ss_pred cccCCEEEeCHHHHhh
Confidence 4678999999999875
No 244
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=80.95 E-value=0.59 Score=56.90 Aligned_cols=46 Identities=24% Similarity=0.716 Sum_probs=38.7
Q ss_pred cccccccccCCCCCC-----ccccccCcccchhhhhhhccCCCCCCCCcchhhc
Q 001840 716 TSSAICCVCSDPPED-----SVVTMCGHVFCYQCASEYITGDDNMCPAPRCKEQ 764 (1007)
Q Consensus 716 ~~~~~C~~c~d~~~~-----~v~t~CgH~~c~~ci~~~~~~~~~~cp~~~cr~~ 764 (1007)
..+..|.+|.|.+.. +-.-+|+|+||..|+..|+.. ...||. ||..
T Consensus 289 ~~~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~er-~qtCP~--CR~~ 339 (543)
T KOG0802|consen 289 LSDELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFER-QQTCPT--CRTV 339 (543)
T ss_pred hcCCeeeeechhhccccccccceeecccchHHHHHHHHHHH-hCcCCc--chhh
Confidence 457899999999887 789999999999999999876 678884 5553
No 245
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=79.33 E-value=0.93 Score=47.46 Aligned_cols=32 Identities=31% Similarity=0.473 Sum_probs=28.9
Q ss_pred ccccccCCCCCCccccccCcccchhhhhhhcc
Q 001840 719 AICCVCSDPPEDSVVTMCGHVFCYQCASEYIT 750 (1007)
Q Consensus 719 ~~C~~c~d~~~~~v~t~CgH~~c~~ci~~~~~ 750 (1007)
.-|++|+.+..+||++.-||+||.+||-+++-
T Consensus 44 dcCsLtLqPc~dPvit~~GylfdrEaILe~il 75 (303)
T KOG3039|consen 44 DCCSLTLQPCRDPVITPDGYLFDREAILEYIL 75 (303)
T ss_pred ceeeeecccccCCccCCCCeeeeHHHHHHHHH
Confidence 35889999999999999999999999988763
No 246
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=78.72 E-value=3.6 Score=45.08 Aligned_cols=21 Identities=29% Similarity=0.319 Sum_probs=17.2
Q ss_pred ceeecCCCCchHHHHHHHHHh
Q 001840 299 GILADDQGLGKTISIIALIQM 319 (1007)
Q Consensus 299 GILADdmGLGKTiqaIali~~ 319 (1007)
-||.=..|.|||..|-+++..
T Consensus 45 vll~GppGtGKTtlA~~ia~~ 65 (261)
T TIGR02881 45 MIFKGNPGTGKTTVARILGKL 65 (261)
T ss_pred EEEEcCCCCCHHHHHHHHHHH
Confidence 478999999999988777643
No 247
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=78.63 E-value=3.2 Score=46.74 Aligned_cols=41 Identities=29% Similarity=0.322 Sum_probs=29.1
Q ss_pred CchHHHHHHHHHHHhhhcCCCccCceeecCCCCchHHHHHHHHHhh
Q 001840 275 LLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQ 320 (1007)
Q Consensus 275 LrpyQ~~~v~wml~~e~~~~~~~GGILADdmGLGKTiqaIali~~~ 320 (1007)
.--+|+.|+.-++.-+- .+ ..|.-.-|.|||+-|+|..+.+
T Consensus 229 rn~eQ~~ALdlLld~dI-~l----V~L~G~AGtGKTlLALaAgleq 269 (436)
T COG1875 229 RNAEQRVALDLLLDDDI-DL----VSLGGKAGTGKTLLALAAGLEQ 269 (436)
T ss_pred ccHHHHHHHHHhcCCCC-Ce----EEeeccCCccHhHHHHHHHHHH
Confidence 33599999987774332 22 3567778999999888877653
No 248
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=78.61 E-value=1.1 Score=50.05 Aligned_cols=52 Identities=33% Similarity=0.711 Sum_probs=37.4
Q ss_pred cccccccCCCC----CCccccccCcccchhhhhhhccCCCC--CCCCcchhhccccccee
Q 001840 718 SAICCVCSDPP----EDSVVTMCGHVFCYQCASEYITGDDN--MCPAPRCKEQLGADVVF 771 (1007)
Q Consensus 718 ~~~C~~c~d~~----~~~v~t~CgH~~c~~ci~~~~~~~~~--~cp~~~cr~~l~~~~~~ 771 (1007)
.++|.||.|-. +..-+..|||+|-..|+.+|+.++-. .|| .|+-++....+|
T Consensus 4 ~A~C~Ic~d~~p~~~~l~~i~~cGhifh~~cl~qwfe~~Ps~R~cp--ic~ik~~~r~~~ 61 (465)
T KOG0827|consen 4 MAECHICIDGRPNDHELGPIGTCGHIFHTTCLTQWFEGDPSNRGCP--ICQIKLQERHVA 61 (465)
T ss_pred cceeeEeccCCccccccccccchhhHHHHHHHHHHHccCCccCCCC--ceeecccceeee
Confidence 46899997642 23456779999999999999987654 566 666555555554
No 249
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=78.21 E-value=11 Score=47.11 Aligned_cols=52 Identities=17% Similarity=0.147 Sum_probs=31.9
Q ss_pred ceeEEEEccCcccCCcccHHHHHHHhc---ccCcEEEEeccCCCCChhHHHHHHHHH
Q 001840 511 GWFRVVLDEAQTIKNHRTQVARACCSL---RAKRRWCLSGTPIQNSIDDLYSYFRFL 564 (1007)
Q Consensus 511 ~w~rVIlDEAH~iKN~~s~~~kal~~L---~a~~r~lLTGTPi~N~l~DL~sll~fL 564 (1007)
+|.++||||+|.+.+.. ....++.| ....+++|+.|=.+.-+.-|.|-+..+
T Consensus 119 r~KVIIIDEah~LT~~A--~NALLKtLEEPP~~v~FILaTtd~~KIp~TIrSRCq~f 173 (830)
T PRK07003 119 RFKVYMIDEVHMLTNHA--FNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSRCLQF 173 (830)
T ss_pred CceEEEEeChhhCCHHH--HHHHHHHHHhcCCCeEEEEEECChhhccchhhhheEEE
Confidence 46789999999996532 22334444 445688888876555444454444333
No 250
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=77.19 E-value=6.2 Score=50.08 Aligned_cols=105 Identities=15% Similarity=0.141 Sum_probs=75.7
Q ss_pred CeEEEEecchhHHHHHHHHHhhc-------CCeEEEecCCCChHHHHHHHHhhccC-cccceeeeeccCcccccccccCC
Q 001840 853 IKSIVFSQWTRMLDLVENSLNQH-------CIQYRRLDGTMSLPARDRAVKDFNTD-REITVMLMSLKAGNLGLNMVAAS 924 (1007)
Q Consensus 853 ~KvIIFsq~~~~ld~L~~~L~~~-------gi~~~~i~Gs~s~~~R~~~I~~F~~~-~~~~VlLlStkagg~GLNL~~A~ 924 (1007)
.-+|||-.-..-+..+...|..+ .+-...++++++..+.+.+ |+.. ++++-+|++|..+-..|..-+.-
T Consensus 414 GaILVFLPG~~eI~~~~~~L~~~~~f~~~~~~~ilplHs~~~s~eQ~~V---F~~pp~g~RKIIlaTNIAETSITIdDVv 490 (924)
T KOG0920|consen 414 GAILVFLPGWEEILQLKELLEVNLPFADSLKFAILPLHSSIPSEEQQAV---FKRPPKGTRKIILATNIAETSITIDDVV 490 (924)
T ss_pred ceEEEEcCCHHHHHHHHHHhhhccccccccceEEEeccccCChHHHHHh---cCCCCCCcchhhhhhhhHhhcccccCeE
Confidence 38999999998888888888643 2556778999988766554 5543 35566777999999999998888
Q ss_pred EEE--------EecCCC----------CCChhHHHhHhhhccCCcccEEEEEEEeCC
Q 001840 925 HVI--------LLDLWW----------NPTTEDQAVDRAHRIGQTRPVTVTRLTIRD 963 (1007)
Q Consensus 925 ~VI--------~~Dp~W----------Np~~e~QaigRi~RiGQ~k~V~VyrLi~~~ 963 (1007)
+|| .|||.- .-+.-.||.||++| .++=..|+|+++.
T Consensus 491 yVIDsG~~Ke~~yD~~~~~s~l~~~wvSkAna~QR~GRAGR---v~~G~cy~L~~~~ 544 (924)
T KOG0920|consen 491 YVIDSGLVKEKSYDPERKVSCLLLSWVSKANAKQRRGRAGR---VRPGICYHLYTRS 544 (924)
T ss_pred EEEecCeeeeeeecccCCcchhheeeccccchHHhcccccC---ccCCeeEEeechh
Confidence 776 455543 34455688887766 4556677777654
No 251
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=77.06 E-value=1.1 Score=50.65 Aligned_cols=55 Identities=29% Similarity=0.632 Sum_probs=41.7
Q ss_pred cccccccccccCCCCC---CccccccCcccchhhhhhhccC----C---CCCCCCcchhhccccc
Q 001840 714 LETSSAICCVCSDPPE---DSVVTMCGHVFCYQCASEYITG----D---DNMCPAPRCKEQLGAD 768 (1007)
Q Consensus 714 le~~~~~C~~c~d~~~---~~v~t~CgH~~c~~ci~~~~~~----~---~~~cp~~~cr~~l~~~ 768 (1007)
+..+...|++|.+... .-+..+|+|+||..|...|.+. . .-.||.+.|+......
T Consensus 180 F~~slf~C~ICf~e~~G~~c~~~lpC~Hv~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~C~~~a~~g 244 (445)
T KOG1814|consen 180 FVNSLFDCCICFEEQMGQHCFKFLPCSHVFCKSCLKDYFTIQIQEGQVSCLKCPDPKCGSVAPPG 244 (445)
T ss_pred HHhhcccceeeehhhcCcceeeecccchHHHHHHHHHHHHHhhhcceeeeecCCCCCCcccCCch
Confidence 3346678999997643 4689999999999999988642 1 2389999998766554
No 252
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=76.86 E-value=18 Score=44.66 Aligned_cols=40 Identities=15% Similarity=0.175 Sum_probs=27.4
Q ss_pred CceEEEcChh-hHHHHHHHHHHHc-C-CCCCeEEEEEeCCCCC
Q 001840 385 AGTLVVCPAS-VLRQWARELEDKV-P-DKAALSVLIYHGGSRT 424 (1007)
Q Consensus 385 ~~tLIV~P~s-Ll~QW~~Ei~k~~-~-~~~~l~vlv~~g~~r~ 424 (1007)
+++||.+|+. |..|+.+++.... . ....+++.+..|...-
T Consensus 47 ~rvlIstpT~~Lq~Ql~~~l~~l~~~~l~~~i~~~~lkGr~nY 89 (636)
T TIGR03117 47 QKIAIAVPTLALMGQLWSELERLTAEGLAGPVQAGFFPGSQEF 89 (636)
T ss_pred ceEEEECCcHHHHHHHHHHHHHHHHhhcCCCeeEEEEECCccc
Confidence 4589999976 7799998887654 1 1125777777776643
No 253
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=75.62 E-value=2.3 Score=37.76 Aligned_cols=43 Identities=28% Similarity=0.736 Sum_probs=30.6
Q ss_pred ccccCCCCCC--ccccccCcccchhhhhhhccCC--CCCCCCcchhhcc
Q 001840 721 CCVCSDPPED--SVVTMCGHVFCYQCASEYITGD--DNMCPAPRCKEQL 765 (1007)
Q Consensus 721 C~~c~d~~~~--~v~t~CgH~~c~~ci~~~~~~~--~~~cp~~~cr~~l 765 (1007)
|+.|..+-++ .+...|+|.|-..||.+++... ...|| .||...
T Consensus 35 Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CP--mCR~~w 81 (85)
T PF12861_consen 35 CPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCP--MCRQPW 81 (85)
T ss_pred CCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCC--CcCCee
Confidence 4444444333 3677999999999999999864 45776 677654
No 254
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=75.36 E-value=1.6 Score=50.74 Aligned_cols=41 Identities=34% Similarity=0.820 Sum_probs=35.3
Q ss_pred ccccccccCCCCCCcccc-ccCcccchhhhhhhccCCCCCCCC
Q 001840 717 SSAICCVCSDPPEDSVVT-MCGHVFCYQCASEYITGDDNMCPA 758 (1007)
Q Consensus 717 ~~~~C~~c~d~~~~~v~t-~CgH~~c~~ci~~~~~~~~~~cp~ 758 (1007)
....|++|.....+|+.+ .|||.||..|+..+.+. ...||+
T Consensus 20 ~~l~C~~C~~vl~~p~~~~~cgh~fC~~C~~~~~~~-~~~cp~ 61 (391)
T KOG0297|consen 20 ENLLCPICMSVLRDPVQTTTCGHRFCAGCLLESLSN-HQKCPV 61 (391)
T ss_pred ccccCccccccccCCCCCCCCCCcccccccchhhcc-CcCCcc
Confidence 346799999999999995 99999999999998877 667774
No 255
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=75.20 E-value=1.8 Score=45.40 Aligned_cols=52 Identities=25% Similarity=0.400 Sum_probs=37.9
Q ss_pred ccccccccCCCCCC----ccccccCcccchhhhhhhccCCCCCCCCcchhhccccccee
Q 001840 717 SSAICCVCSDPPED----SVVTMCGHVFCYQCASEYITGDDNMCPAPRCKEQLGADVVF 771 (1007)
Q Consensus 717 ~~~~C~~c~d~~~~----~v~t~CgH~~c~~ci~~~~~~~~~~cp~~~cr~~l~~~~~~ 771 (1007)
..-+|++|.|.+.. .++..|||++|.+|++.++..+. .|| .|...+...+++
T Consensus 220 ~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~D~-v~p--v~d~plkdrdiI 275 (303)
T KOG3039|consen 220 KRYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRKDM-VDP--VTDKPLKDRDII 275 (303)
T ss_pred cceecccchhhhcCccceEEeccCCcEeeHHHHHHhccccc-ccc--CCCCcCcccceE
Confidence 35689999887644 68999999999999999887653 455 455555555443
No 256
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=74.88 E-value=1.3 Score=49.39 Aligned_cols=49 Identities=31% Similarity=0.702 Sum_probs=40.3
Q ss_pred ccccccccCCCCCCccccccCcc-cchhhhhhhccCCCCCCCCcchhhccccc
Q 001840 717 SSAICCVCSDPPEDSVVTMCGHV-FCYQCASEYITGDDNMCPAPRCKEQLGAD 768 (1007)
Q Consensus 717 ~~~~C~~c~d~~~~~v~t~CgH~-~c~~ci~~~~~~~~~~cp~~~cr~~l~~~ 768 (1007)
+..+|.||.+.+.+.++.+|-|. .|..|..... ...+.|| .||..+...
T Consensus 289 ~gkeCVIClse~rdt~vLPCRHLCLCs~Ca~~Lr-~q~n~CP--ICRqpi~~l 338 (349)
T KOG4265|consen 289 SGKECVICLSESRDTVVLPCRHLCLCSGCAKSLR-YQTNNCP--ICRQPIEEL 338 (349)
T ss_pred CCCeeEEEecCCcceEEecchhhehhHhHHHHHH-HhhcCCC--ccccchHhh
Confidence 56799999999999999999998 7888877655 5567888 788877554
No 257
>PLN03025 replication factor C subunit; Provisional
Probab=74.09 E-value=37 Score=38.35 Aligned_cols=56 Identities=20% Similarity=0.282 Sum_probs=33.1
Q ss_pred ceeEEEEccCcccCCcccH-HHHHHHhcccCcEEEEeccCCCCChhHHHHHHHHHhc
Q 001840 511 GWFRVVLDEAQTIKNHRTQ-VARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRFLKY 566 (1007)
Q Consensus 511 ~w~rVIlDEAH~iKN~~s~-~~kal~~L~a~~r~lLTGTPi~N~l~DL~sll~fL~~ 566 (1007)
.|.+|||||+|.+-..... ..+.+.......+++|+.++...-+..|.+-...+..
T Consensus 99 ~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SRc~~i~f 155 (319)
T PLN03025 99 RHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRF 155 (319)
T ss_pred CeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHHhhhcccC
Confidence 3678999999998543211 1122222245568889888766555556555444433
No 258
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=73.57 E-value=21 Score=41.05 Aligned_cols=42 Identities=17% Similarity=0.154 Sum_probs=25.9
Q ss_pred HHHHHHHHHHhhhcCCCccCceeecCCCCchHHHHHHHHHhh
Q 001840 279 QKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQ 320 (1007)
Q Consensus 279 Q~~~v~wml~~e~~~~~~~GGILADdmGLGKTiqaIali~~~ 320 (1007)
|..++..+......+.-...-++.-+.|+|||..+..++...
T Consensus 28 h~~a~~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~lA~~L 69 (351)
T PRK09112 28 HEEAEAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANHI 69 (351)
T ss_pred cHHHHHHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHHHHHH
Confidence 334444444433322112345779999999999988887554
No 259
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=73.32 E-value=1.5 Score=46.60 Aligned_cols=54 Identities=35% Similarity=0.760 Sum_probs=40.4
Q ss_pred ccccccccCCCCCCc----------cccccCcccchhhhhhh-ccCCCCCCCCcchhhcccccceec
Q 001840 717 SSAICCVCSDPPEDS----------VVTMCGHVFCYQCASEY-ITGDDNMCPAPRCKEQLGADVVFS 772 (1007)
Q Consensus 717 ~~~~C~~c~d~~~~~----------v~t~CgH~~c~~ci~~~-~~~~~~~cp~~~cr~~l~~~~~~~ 772 (1007)
++..|.+|....... .-..|+|+|-..||..+ +-|....|| -|++.+.-...|+
T Consensus 223 ~d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWcivGKkqtCP--YCKekVdl~rmfs 287 (328)
T KOG1734|consen 223 SDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIVGKKQTCP--YCKEKVDLKRMFS 287 (328)
T ss_pred CcchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheeecCCCCCc--hHHHHhhHhhhcc
Confidence 467889997654332 34589999999999998 678888998 6888776665544
No 260
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=73.19 E-value=28 Score=36.78 Aligned_cols=23 Identities=22% Similarity=0.039 Sum_probs=17.8
Q ss_pred cCceeecCCCCchHHHHHHHHHh
Q 001840 297 LGGILADDQGLGKTISIIALIQM 319 (1007)
Q Consensus 297 ~GGILADdmGLGKTiqaIali~~ 319 (1007)
..-+|-=+.|.|||..+.++...
T Consensus 39 ~~lll~G~~G~GKT~la~~~~~~ 61 (226)
T TIGR03420 39 RFLYLWGESGSGKSHLLQAACAA 61 (226)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 34577889999999988777643
No 261
>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=72.98 E-value=1.7 Score=46.01 Aligned_cols=42 Identities=31% Similarity=0.774 Sum_probs=28.2
Q ss_pred ccccCC--CCCCccccccCcccchhhhhhhccCCCCCCCCcchhhcccc
Q 001840 721 CCVCSD--PPEDSVVTMCGHVFCYQCASEYITGDDNMCPAPRCKEQLGA 767 (1007)
Q Consensus 721 C~~c~d--~~~~~v~t~CgH~~c~~ci~~~~~~~~~~cp~~~cr~~l~~ 767 (1007)
|..|.- ....-.+|.|+|+||.+|....... .|| .|+..+..
T Consensus 6 Cn~C~~~~~~~~f~LTaC~HvfC~~C~k~~~~~---~C~--lCkk~ir~ 49 (233)
T KOG4739|consen 6 CNKCFRFPSQDPFFLTACRHVFCEPCLKASSPD---VCP--LCKKSIRI 49 (233)
T ss_pred eccccccCCCCceeeeechhhhhhhhcccCCcc---ccc--cccceeee
Confidence 555543 3344589999999999997653322 565 78877544
No 262
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=72.56 E-value=2.7 Score=40.29 Aligned_cols=35 Identities=29% Similarity=0.357 Sum_probs=26.9
Q ss_pred eEEEEccCcccCCcccHHHHHHHhc--ccCcEEEEeccC
Q 001840 513 FRVVLDEAQTIKNHRTQVARACCSL--RAKRRWCLSGTP 549 (1007)
Q Consensus 513 ~rVIlDEAH~iKN~~s~~~kal~~L--~a~~r~lLTGTP 549 (1007)
.+|||||+|.+. +......++.+ .....++|+|||
T Consensus 89 ~~lviDe~~~l~--~~~~l~~l~~l~~~~~~~vvl~G~~ 125 (131)
T PF13401_consen 89 VLLVIDEADHLF--SDEFLEFLRSLLNESNIKVVLVGTP 125 (131)
T ss_dssp EEEEEETTHHHH--THHHHHHHHHHTCSCBEEEEEEESS
T ss_pred eEEEEeChHhcC--CHHHHHHHHHHHhCCCCeEEEEECh
Confidence 689999999984 24555666666 566789999999
No 263
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=71.11 E-value=2.2 Score=46.16 Aligned_cols=47 Identities=26% Similarity=0.673 Sum_probs=36.2
Q ss_pred cccccCC-----CCCCccccccCcccchhhhhhhccCCCCCCCCcchhhccccc
Q 001840 720 ICCVCSD-----PPEDSVVTMCGHVFCYQCASEYITGDDNMCPAPRCKEQLGAD 768 (1007)
Q Consensus 720 ~C~~c~d-----~~~~~v~t~CgH~~c~~ci~~~~~~~~~~cp~~~cr~~l~~~ 768 (1007)
.|+.|-. +.....+..|+|..|..|+..++......|| .|-..+..+
T Consensus 2 ~Cp~CKt~~Y~np~lk~~in~C~H~lCEsCvd~iF~~g~~~Cp--eC~~iLRk~ 53 (300)
T KOG3800|consen 2 ACPKCKTDRYLNPDLKLMINECGHRLCESCVDRIFSLGPAQCP--ECMVILRKN 53 (300)
T ss_pred CCcccccceecCccceeeeccccchHHHHHHHHHHhcCCCCCC--cccchhhhc
Confidence 4777743 2233467799999999999999999888999 887776654
No 264
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=70.71 E-value=12 Score=40.07 Aligned_cols=75 Identities=16% Similarity=0.186 Sum_probs=54.5
Q ss_pred cccCchHHHHHHHHHHHhhhcCCCccCceeecCCCCchHHHHHHHHHhhccccccchhhhccccccccccCCCCCCCCCc
Q 001840 272 SVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLDDDDDNGNA 351 (1007)
Q Consensus 272 ~~~LrpyQ~~~v~wml~~e~~~~~~~GGILADdmGLGKTiqaIali~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (1007)
.+-+||-|.+-+..|.+-. ...+.++=--||-|||-..+=+++.....
T Consensus 21 ~iliR~~Q~~ia~~mi~~~----~~~n~v~QlnMGeGKTsVI~Pmla~~LAd---------------------------- 68 (229)
T PF12340_consen 21 NILIRPVQVEIAREMISPP----SGKNSVMQLNMGEGKTSVIVPMLALALAD---------------------------- 68 (229)
T ss_pred CceeeHHHHHHHHHHhCCC----CCCCeEeeecccCCccchHHHHHHHHHcC----------------------------
Confidence 4569999999999998532 22457899999999997766555442211
Q ss_pred CcccccccCCCCCCCCCCcccccccccCCCCCCCceEEEcChhhHHHHHHHHHHHcCC
Q 001840 352 GLDKVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPASVLRQWARELEDKVPD 409 (1007)
Q Consensus 352 ~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tLIV~P~sLl~QW~~Ei~k~~~~ 409 (1007)
..+=+-||||++|+.|-.+-+...++.
T Consensus 69 -------------------------------g~~LvrviVpk~Ll~q~~~~L~~~lg~ 95 (229)
T PF12340_consen 69 -------------------------------GSRLVRVIVPKALLEQMRQMLRSRLGG 95 (229)
T ss_pred -------------------------------CCcEEEEEcCHHHHHHHHHHHHHHHHH
Confidence 012278999999999999888887763
No 265
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=69.33 E-value=3.1 Score=52.28 Aligned_cols=44 Identities=18% Similarity=0.141 Sum_probs=25.8
Q ss_pred ccCchHHHHHHHHHHHhhhcCCCccC--ceeecCCCCchHHHHHHH
Q 001840 273 VNLLKHQKIALAWMLQKETRSLHCLG--GILADDQGLGKTISIIAL 316 (1007)
Q Consensus 273 ~~LrpyQ~~~v~wml~~e~~~~~~~G--GILADdmGLGKTiqaIal 316 (1007)
++-||-|.+-..-+.+......+..+ .++=-.+|+|||+-.|.=
T Consensus 24 ~e~R~~Q~~M~~~V~~al~~~~~~~~~~lviEAgTGtGKTlaYLlP 69 (697)
T PRK11747 24 FIPRAGQRQMIAEVAKTLAGEYLKDGRILVIEAGTGVGKTLSYLLA 69 (697)
T ss_pred CCcCHHHHHHHHHHHHHHhcccccccceEEEECCCCcchhHHHHHH
Confidence 47899999865555543332100012 233348999999976643
No 266
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair]
Probab=68.31 E-value=23 Score=44.90 Aligned_cols=42 Identities=31% Similarity=0.334 Sum_probs=31.4
Q ss_pred cCchHHHHHHHHHHHhhhcCCCccCceeecCCCCchHHHHHHHHHhhc
Q 001840 274 NLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQR 321 (1007)
Q Consensus 274 ~LrpyQ~~~v~wml~~e~~~~~~~GGILADdmGLGKTiqaIali~~~~ 321 (1007)
.|-.-|++|+...+.-+.- .++--=.|.|||-+..++|..+.
T Consensus 669 ~LN~dQr~A~~k~L~aedy------~LI~GMPGTGKTTtI~~LIkiL~ 710 (1100)
T KOG1805|consen 669 RLNNDQRQALLKALAAEDY------ALILGMPGTGKTTTISLLIKILV 710 (1100)
T ss_pred hcCHHHHHHHHHHHhccch------heeecCCCCCchhhHHHHHHHHH
Confidence 5888999999888866543 34555579999998888875543
No 267
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=67.84 E-value=2.9 Score=46.40 Aligned_cols=51 Identities=24% Similarity=0.672 Sum_probs=38.2
Q ss_pred hhcccccccccccCCCCC-------------CccccccCcccchhhhhhhccCCCCCCCCcchhhcc
Q 001840 712 SRLETSSAICCVCSDPPE-------------DSVVTMCGHVFCYQCASEYITGDDNMCPAPRCKEQL 765 (1007)
Q Consensus 712 ~~le~~~~~C~~c~d~~~-------------~~v~t~CgH~~c~~ci~~~~~~~~~~cp~~~cr~~l 765 (1007)
+.+..++..|.+|.|.+- .|---+|||++-..|+..|+.. +..|| -||.++
T Consensus 281 eql~n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~ER-qQTCP--ICr~p~ 344 (491)
T COG5243 281 EQLTNSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLER-QQTCP--ICRRPV 344 (491)
T ss_pred hhhcCCCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHHh-ccCCC--cccCcc
Confidence 445568899999998732 2456799999999999998764 34676 677764
No 268
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=67.48 E-value=2.7 Score=47.51 Aligned_cols=47 Identities=23% Similarity=0.769 Sum_probs=34.5
Q ss_pred cccccccccCCCCCCc--------cccccCcccchhhhhhhccCCC------CCCCCcchhhc
Q 001840 716 TSSAICCVCSDPPEDS--------VVTMCGHVFCYQCASEYITGDD------NMCPAPRCKEQ 764 (1007)
Q Consensus 716 ~~~~~C~~c~d~~~~~--------v~t~CgH~~c~~ci~~~~~~~~------~~cp~~~cr~~ 764 (1007)
..+.+|.||.+..... ++..|.|.||..|+..|..... ..|| .||..
T Consensus 159 s~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP--~CRv~ 219 (344)
T KOG1039|consen 159 SSEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCP--FCRVP 219 (344)
T ss_pred cccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCC--cccCc
Confidence 4578999999875443 4578999999999999874333 5676 56543
No 269
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=66.94 E-value=7.2 Score=43.38 Aligned_cols=23 Identities=22% Similarity=0.306 Sum_probs=18.1
Q ss_pred CceeecCCCCchHHHHHHHHHhh
Q 001840 298 GGILADDQGLGKTISIIALIQMQ 320 (1007)
Q Consensus 298 GGILADdmGLGKTiqaIali~~~ 320 (1007)
+-+|--+.|.|||..|-++....
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~~l 82 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQIL 82 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHH
Confidence 45778999999999887776543
No 270
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=66.21 E-value=13 Score=42.25 Aligned_cols=43 Identities=28% Similarity=0.251 Sum_probs=30.7
Q ss_pred ccccceeEEEEccCccc--CCcccHHHHHHHhcc-cCcEEEEeccC
Q 001840 507 LAKVGWFRVVLDEAQTI--KNHRTQVARACCSLR-AKRRWCLSGTP 549 (1007)
Q Consensus 507 L~~~~w~rVIlDEAH~i--KN~~s~~~kal~~L~-a~~r~lLTGTP 549 (1007)
|..-.....|+|||... ++...+.+.....+. ....+++|||-
T Consensus 165 l~~~~iKmfvlDEaDEmLs~gfkdqI~~if~~lp~~vQv~l~SAT~ 210 (397)
T KOG0327|consen 165 LSTDGIKMFVLDEADEMLSRGFKDQIYDIFQELPSDVQVVLLSATM 210 (397)
T ss_pred ccccceeEEeecchHhhhccchHHHHHHHHHHcCcchhheeecccC
Confidence 34444567999999886 456667777777774 44788999994
No 271
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=65.20 E-value=36 Score=41.21 Aligned_cols=95 Identities=16% Similarity=0.068 Sum_probs=68.9
Q ss_pred ccchhhHHHHHHHHHhhhhcccccchhhhhhcccCCCCCccccCCCCCCCCeEEEEecchhHHHHHHHHHhhc-CCeEEE
Q 001840 803 EYISSKIRTVLDILHTQCELNTKCSIVEIHDLAGSNGSSAVHSKSPIEGPIKSIVFSQWTRMLDLVENSLNQH-CIQYRR 881 (1007)
Q Consensus 803 ~~~SsKl~~l~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvIIFsq~~~~ld~L~~~L~~~-gi~~~~ 881 (1007)
...|.|-...+..+......+. ++||.+........+.+.|++. |..+..
T Consensus 5 ~TGsGKT~v~l~~i~~~l~~g~-----------------------------~vLvlvP~i~L~~Q~~~~l~~~f~~~v~v 55 (505)
T TIGR00595 5 VTGSGKTEVYLQAIEKVLALGK-----------------------------SVLVLVPEIALTPQMIQRFKYRFGSQVAV 55 (505)
T ss_pred CCCCCHHHHHHHHHHHHHHcCC-----------------------------eEEEEeCcHHHHHHHHHHHHHHhCCcEEE
Confidence 3468899888888887776665 8999999998888888888765 778899
Q ss_pred ecCCCChHHHHHHHHhhccCcccceeeeeccCcccccccccCCEEEEe
Q 001840 882 LDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILL 929 (1007)
Q Consensus 882 i~Gs~s~~~R~~~I~~F~~~~~~~VlLlStkagg~GLNL~~A~~VI~~ 929 (1007)
++|.++..+|.+...+...+ +..|++.+..+. =+-+.....||+=
T Consensus 56 lhs~~~~~er~~~~~~~~~g-~~~IVVGTrsal--f~p~~~l~lIIVD 100 (505)
T TIGR00595 56 LHSGLSDSEKLQAWRKVKNG-EILVVIGTRSAL--FLPFKNLGLIIVD 100 (505)
T ss_pred EECCCCHHHHHHHHHHHHcC-CCCEEECChHHH--cCcccCCCEEEEE
Confidence 99999999998887776644 566766554332 1234444444443
No 272
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=64.76 E-value=2.6 Score=48.44 Aligned_cols=44 Identities=30% Similarity=0.743 Sum_probs=33.8
Q ss_pred cccccccCCCCCC-----------------ccccccCcccchhhhhhhccCCCCCCCCcch
Q 001840 718 SAICCVCSDPPED-----------------SVVTMCGHVFCYQCASEYITGDDNMCPAPRC 761 (1007)
Q Consensus 718 ~~~C~~c~d~~~~-----------------~v~t~CgH~~c~~ci~~~~~~~~~~cp~~~c 761 (1007)
...|.||..+.+. =++|+|.|+|-.+|+.+++.+-.-.||++.|
T Consensus 571 t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WMd~ykl~CPvCR~ 631 (636)
T KOG0828|consen 571 TNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWMDTYKLICPVCRC 631 (636)
T ss_pred cccceEeccccceeeccCcchhhhhhhhccccccchHHHHHHHHHHHHHhhhcccCCccCC
Confidence 4569999765321 2578999999999999999887778985444
No 273
>CHL00181 cbbX CbbX; Provisional
Probab=64.68 E-value=15 Score=41.01 Aligned_cols=21 Identities=19% Similarity=0.330 Sum_probs=17.7
Q ss_pred ceeecCCCCchHHHHHHHHHh
Q 001840 299 GILADDQGLGKTISIIALIQM 319 (1007)
Q Consensus 299 GILADdmGLGKTiqaIali~~ 319 (1007)
-+|-=..|.|||..|-+++..
T Consensus 62 ill~G~pGtGKT~lAr~la~~ 82 (287)
T CHL00181 62 MSFTGSPGTGKTTVALKMADI 82 (287)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 378899999999998888754
No 274
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=64.28 E-value=9.6 Score=43.15 Aligned_cols=22 Identities=27% Similarity=0.315 Sum_probs=18.5
Q ss_pred CceeecCCCCchHHHHHHHHHh
Q 001840 298 GGILADDQGLGKTISIIALIQM 319 (1007)
Q Consensus 298 GGILADdmGLGKTiqaIali~~ 319 (1007)
.-+|.-+.|.|||..+.+++..
T Consensus 38 ~lll~Gp~GtGKT~la~~~~~~ 59 (337)
T PRK12402 38 HLLVQGPPGSGKTAAVRALARE 59 (337)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3588899999999999888754
No 275
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=64.17 E-value=29 Score=39.43 Aligned_cols=46 Identities=13% Similarity=0.075 Sum_probs=35.1
Q ss_pred cCchHHHHHHHHHHHhhhcCCCccCceeecCCCCchHHHHHHHHHhhcc
Q 001840 274 NLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRS 322 (1007)
Q Consensus 274 ~LrpyQ~~~v~wml~~e~~~~~~~GGILADdmGLGKTiqaIali~~~~~ 322 (1007)
.++|+|.....-|+++.+. ..+=++.-..|+|||..|.+++....+
T Consensus 3 ~~yPWl~~~~~~~~~~~r~---~ha~Lf~G~~G~GK~~~A~~~A~~llC 48 (328)
T PRK05707 3 EIYPWQQSLWQQLAGRGRH---PHAYLLHGPAGIGKRALAERLAAALLC 48 (328)
T ss_pred cCCCCcHHHHHHHHHCCCc---ceeeeeECCCCCCHHHHHHHHHHHHcC
Confidence 4689999999888877332 233467889999999999998876544
No 276
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=63.39 E-value=52 Score=40.77 Aligned_cols=41 Identities=22% Similarity=0.233 Sum_probs=26.1
Q ss_pred hHHHHHHHHHHHhhhcCCCccCceeecCCCCchHHHHHHHHHhh
Q 001840 277 KHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQ 320 (1007)
Q Consensus 277 pyQ~~~v~wml~~e~~~~~~~GGILADdmGLGKTiqaIali~~~ 320 (1007)
+|=...+..++...+. ...-|+.-..|.|||-.|.+++...
T Consensus 21 e~vv~~L~~aI~~grl---~HAyLF~GPpGvGKTTlAriLAK~L 61 (702)
T PRK14960 21 NHVSRALSSALERGRL---HHAYLFTGTRGVGKTTIARILAKCL 61 (702)
T ss_pred HHHHHHHHHHHHcCCC---CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3444555555543321 1234889999999999888877553
No 277
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=62.66 E-value=35 Score=42.99 Aligned_cols=74 Identities=11% Similarity=0.114 Sum_probs=54.1
Q ss_pred eEEEEecchhHHHHHHH----HHhhcCCeEEEecCCCChHHHHHHHHhhccCcccceeeeeccCcccccccccCCEEEE
Q 001840 854 KSIVFSQWTRMLDLVEN----SLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVIL 928 (1007)
Q Consensus 854 KvIIFsq~~~~ld~L~~----~L~~~gi~~~~i~Gs~s~~~R~~~I~~F~~~~~~~VlLlStkagg~GLNL~~A~~VI~ 928 (1007)
+++|.+.-...+.-+.. .+...|+++..++|+++..+|.+.++...++ .+.|++.+.......+.+.....||+
T Consensus 312 q~lilaPT~~LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g-~~~IvVgT~~ll~~~v~~~~l~lvVI 389 (681)
T PRK10917 312 QAALMAPTEILAEQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASG-EADIVIGTHALIQDDVEFHNLGLVII 389 (681)
T ss_pred eEEEEeccHHHHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCC-CCCEEEchHHHhcccchhcccceEEE
Confidence 89999988777665544 4455589999999999999999999988765 57777776555555555655554443
No 278
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=62.34 E-value=56 Score=36.61 Aligned_cols=39 Identities=5% Similarity=0.039 Sum_probs=22.9
Q ss_pred eeEEEEccCcccCCccc--HHHHHHHhcccCcEEEEeccCC
Q 001840 512 WFRVVLDEAQTIKNHRT--QVARACCSLRAKRRWCLSGTPI 550 (1007)
Q Consensus 512 w~rVIlDEAH~iKN~~s--~~~kal~~L~a~~r~lLTGTPi 550 (1007)
..+|||||+|.+..... .....+.......++++|++..
T Consensus 101 ~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~ 141 (316)
T PHA02544 101 GKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNK 141 (316)
T ss_pred CeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCCh
Confidence 34799999999833221 1122233334566888888654
No 279
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=61.90 E-value=37 Score=31.10 Aligned_cols=56 Identities=5% Similarity=-0.037 Sum_probs=39.8
Q ss_pred eEEEEec------chhHHHHHHHHHhhcCCeEEEecCCCChHHHHHHHHhhccCcccceeee
Q 001840 854 KSIVFSQ------WTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLM 909 (1007)
Q Consensus 854 KvIIFsq------~~~~ld~L~~~L~~~gi~~~~i~Gs~s~~~R~~~I~~F~~~~~~~VlLl 909 (1007)
+|+||+. +-.....+...|...|++|..++=....+.|+.+.+......-+.|++-
T Consensus 13 ~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~~i~~~~~di~~~~~~~~~l~~~tg~~tvP~vfi~ 74 (97)
T TIGR00365 13 PVVLYMKGTPQFPQCGFSARAVQILKACGVPFAYVNVLEDPEIRQGIKEYSNWPTIPQLYVK 74 (97)
T ss_pred CEEEEEccCCCCCCCchHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHhCCCCCCEEEEC
Confidence 9999975 4566788889999999999988876666666666555544333445553
No 280
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=61.68 E-value=5.9 Score=31.28 Aligned_cols=42 Identities=24% Similarity=0.756 Sum_probs=20.9
Q ss_pred ccccCCCCCC----ccccccCcccchhhhhhhccCCCCCCCCcchhhc
Q 001840 721 CCVCSDPPED----SVVTMCGHVFCYQCASEYITGDDNMCPAPRCKEQ 764 (1007)
Q Consensus 721 C~~c~d~~~~----~v~t~CgH~~c~~ci~~~~~~~~~~cp~~~cr~~ 764 (1007)
|++|.+..+. -.-=.||.-+|..|...++...+..|| .||++
T Consensus 1 cp~C~e~~d~~d~~~~PC~Cgf~IC~~C~~~i~~~~~g~CP--gCr~~ 46 (48)
T PF14570_consen 1 CPLCDEELDETDKDFYPCECGFQICRFCYHDILENEGGRCP--GCREP 46 (48)
T ss_dssp -TTTS-B--CCCTT--SSTTS----HHHHHHHTTSS-SB-T--TT--B
T ss_pred CCCcccccccCCCccccCcCCCcHHHHHHHHHHhccCCCCC--CCCCC
Confidence 5566655422 122378999999999999887788888 67764
No 281
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=61.59 E-value=50 Score=31.23 Aligned_cols=41 Identities=12% Similarity=-0.010 Sum_probs=25.0
Q ss_pred eeEEEEccCcccCCcc-cHHHHHHHhcc------cCcEEEEeccCCCC
Q 001840 512 WFRVVLDEAQTIKNHR-TQVARACCSLR------AKRRWCLSGTPIQN 552 (1007)
Q Consensus 512 w~rVIlDEAH~iKN~~-s~~~kal~~L~------a~~r~lLTGTPi~N 552 (1007)
...+||||++.+.... ......+..+. ...++++++++...
T Consensus 85 ~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~~ 132 (151)
T cd00009 85 PGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPLL 132 (151)
T ss_pred CeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCcccc
Confidence 4579999999873221 22333344442 45678888887654
No 282
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=61.44 E-value=4.1 Score=45.54 Aligned_cols=44 Identities=34% Similarity=0.866 Sum_probs=32.0
Q ss_pred ccccccccCCCCCCccccccCcccchhhhhhhccCCCCCCCCcchhhccc
Q 001840 717 SSAICCVCSDPPEDSVVTMCGHVFCYQCASEYITGDDNMCPAPRCKEQLG 766 (1007)
Q Consensus 717 ~~~~C~~c~d~~~~~v~t~CgH~~c~~ci~~~~~~~~~~cp~~~cr~~l~ 766 (1007)
...-|.+|++.+.+.+.-+|||+-| |..-... -..|| .||..|.
T Consensus 304 ~p~lcVVcl~e~~~~~fvpcGh~cc--ct~cs~~--l~~CP--vCR~rI~ 347 (355)
T KOG1571|consen 304 QPDLCVVCLDEPKSAVFVPCGHVCC--CTLCSKH--LPQCP--VCRQRIR 347 (355)
T ss_pred CCCceEEecCCccceeeecCCcEEE--chHHHhh--CCCCc--hhHHHHH
Confidence 4567999999999999999999977 5332221 12366 6887664
No 283
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=60.70 E-value=3.6 Score=47.69 Aligned_cols=53 Identities=32% Similarity=0.716 Sum_probs=39.6
Q ss_pred cccccccC-CCCC---CccccccCcccchhhhhhhcc-----CCCCCCCCcchhhcccccce
Q 001840 718 SAICCVCS-DPPE---DSVVTMCGHVFCYQCASEYIT-----GDDNMCPAPRCKEQLGADVV 770 (1007)
Q Consensus 718 ~~~C~~c~-d~~~---~~v~t~CgH~~c~~ci~~~~~-----~~~~~cp~~~cr~~l~~~~~ 770 (1007)
..+|.+|. +-+. ...+..|+|-||.+|+.+++. +....||...|...+..+..
T Consensus 146 ~~~C~iC~~e~~~~~~~f~~~~C~H~fC~~C~k~~iev~~~~~~~~~C~~~~C~~~l~~~~c 207 (384)
T KOG1812|consen 146 KEECGICFVEDPEAEDMFSVLKCGHRFCKDCVKQHIEVKLLSGTVIRCPHDGCESRLTLESC 207 (384)
T ss_pred cccCccCccccccHhhhHHHhcccchhhhHHhHHHhhhhhccCCCccCCCCCCCccCCHHHH
Confidence 45788887 3322 234788999999999998876 44568998888887776654
No 284
>PRK05580 primosome assembly protein PriA; Validated
Probab=60.35 E-value=50 Score=41.57 Aligned_cols=96 Identities=13% Similarity=0.019 Sum_probs=70.2
Q ss_pred ccchhhHHHHHHHHHhhhhcccccchhhhhhcccCCCCCccccCCCCCCCCeEEEEecchhHHHHHHHHHhhc-CCeEEE
Q 001840 803 EYISSKIRTVLDILHTQCELNTKCSIVEIHDLAGSNGSSAVHSKSPIEGPIKSIVFSQWTRMLDLVENSLNQH-CIQYRR 881 (1007)
Q Consensus 803 ~~~SsKl~~l~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvIIFsq~~~~ld~L~~~L~~~-gi~~~~ 881 (1007)
...|.|-...+..+......+. ++||.+.....+..+.+.|++. |..+..
T Consensus 170 ~TGSGKT~v~l~~i~~~l~~g~-----------------------------~vLvLvPt~~L~~Q~~~~l~~~fg~~v~~ 220 (679)
T PRK05580 170 VTGSGKTEVYLQAIAEVLAQGK-----------------------------QALVLVPEIALTPQMLARFRARFGAPVAV 220 (679)
T ss_pred CCCChHHHHHHHHHHHHHHcCC-----------------------------eEEEEeCcHHHHHHHHHHHHHHhCCCEEE
Confidence 3468899888887777666555 8999999999988888888765 888999
Q ss_pred ecCCCChHHHHHHHHhhccCcccceeeeeccCcccccccccCCEEEEec
Q 001840 882 LDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLD 930 (1007)
Q Consensus 882 i~Gs~s~~~R~~~I~~F~~~~~~~VlLlStkagg~GLNL~~A~~VI~~D 930 (1007)
++|+++..+|.+...+...+ ++.|++.+..+. =+.+.....||+=+
T Consensus 221 ~~s~~s~~~r~~~~~~~~~g-~~~IVVgTrsal--~~p~~~l~liVvDE 266 (679)
T PRK05580 221 LHSGLSDGERLDEWRKAKRG-EAKVVIGARSAL--FLPFKNLGLIIVDE 266 (679)
T ss_pred EECCCCHHHHHHHHHHHHcC-CCCEEEeccHHh--cccccCCCEEEEEC
Confidence 99999999998888777655 567777654332 23444455555443
No 285
>PRK04195 replication factor C large subunit; Provisional
Probab=59.74 E-value=62 Score=38.89 Aligned_cols=22 Identities=32% Similarity=0.273 Sum_probs=18.3
Q ss_pred cCceeecCCCCchHHHHHHHHH
Q 001840 297 LGGILADDQGLGKTISIIALIQ 318 (1007)
Q Consensus 297 ~GGILADdmGLGKTiqaIali~ 318 (1007)
...||.-..|.|||..+-+++.
T Consensus 40 ~~lLL~GppG~GKTtla~ala~ 61 (482)
T PRK04195 40 KALLLYGPPGVGKTSLAHALAN 61 (482)
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 5578999999999998877763
No 286
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=59.45 E-value=35 Score=40.62 Aligned_cols=21 Identities=24% Similarity=0.264 Sum_probs=16.2
Q ss_pred CceeecCCCCchHHHHHHHHH
Q 001840 298 GGILADDQGLGKTISIIALIQ 318 (1007)
Q Consensus 298 GGILADdmGLGKTiqaIali~ 318 (1007)
+-+|.=++|+|||-.+-|+..
T Consensus 143 pl~i~G~~G~GKTHLl~Ai~~ 163 (450)
T PRK14087 143 PLFIYGESGMGKTHLLKAAKN 163 (450)
T ss_pred ceEEECCCCCcHHHHHHHHHH
Confidence 346889999999987766653
No 287
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=59.15 E-value=90 Score=37.82 Aligned_cols=56 Identities=13% Similarity=0.116 Sum_probs=31.2
Q ss_pred ceeEEEEccCcccCCcccHHHHHHHhc---ccCcEEEEeccCCCCChhHHHHHHHHHhcCC
Q 001840 511 GWFRVVLDEAQTIKNHRTQVARACCSL---RAKRRWCLSGTPIQNSIDDLYSYFRFLKYDP 568 (1007)
Q Consensus 511 ~w~rVIlDEAH~iKN~~s~~~kal~~L---~a~~r~lLTGTPi~N~l~DL~sll~fL~~~~ 568 (1007)
+|.++||||+|.+... .....++.| ....+++|..|-...-+.-+.+-...+...+
T Consensus 119 ~~kV~iIDE~~~ls~~--a~naLLk~LEepp~~~~fIlattd~~kl~~tI~SRc~~~~f~~ 177 (509)
T PRK14958 119 RFKVYLIDEVHMLSGH--SFNALLKTLEEPPSHVKFILATTDHHKLPVTVLSRCLQFHLAQ 177 (509)
T ss_pred CcEEEEEEChHhcCHH--HHHHHHHHHhccCCCeEEEEEECChHhchHHHHHHhhhhhcCC
Confidence 4678999999998542 222333444 3455677766654444444544433333333
No 288
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=58.79 E-value=22 Score=44.88 Aligned_cols=43 Identities=28% Similarity=0.333 Sum_probs=33.4
Q ss_pred cCchHHHHHHHHHHHhhhcCCCccCceeecCCCCchHHHHHHHHHh
Q 001840 274 NLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQM 319 (1007)
Q Consensus 274 ~LrpyQ~~~v~wml~~e~~~~~~~GGILADdmGLGKTiqaIali~~ 319 (1007)
+.||.|++-..-+.+--..+ ..++|--.+|.|||+.+|+..+.
T Consensus 10 ~~y~~Q~~~m~~v~~~l~~~---~~~llEsPTGtGKTlslL~~aL~ 52 (705)
T TIGR00604 10 KIYPEQRSYMRDLKRSLDRG---DEAILEMPSGTGKTISLLSLILA 52 (705)
T ss_pred CCCHHHHHHHHHHHHHhccC---CceEEeCCCCCCccHHHHHHHHH
Confidence 36899999887777655443 33788899999999998877765
No 289
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=58.72 E-value=19 Score=45.96 Aligned_cols=61 Identities=15% Similarity=0.267 Sum_probs=39.0
Q ss_pred CCCCceEEEcCh-hhHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCccccCCCcEEEechhhhh
Q 001840 382 RPAAGTLVVCPA-SVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVELAKYDVVLTTYSIVT 444 (1007)
Q Consensus 382 ~~~~~tLIV~P~-sLl~QW~~Ei~k~~~~~~~l~vlv~~g~~r~~~~~~l~~~dVVItSy~~l~ 444 (1007)
.|.+++.+|.|. .|+.-=.+.+.+..... .++++-..|.... +.....+.+++|||.+..-
T Consensus 971 ~p~~kvvyIap~kalvker~~Dw~~r~~~~-g~k~ie~tgd~~p-d~~~v~~~~~~ittpek~d 1032 (1230)
T KOG0952|consen 971 YPGSKVVYIAPDKALVKERSDDWSKRDELP-GIKVIELTGDVTP-DVKAVREADIVITTPEKWD 1032 (1230)
T ss_pred CCCccEEEEcCCchhhcccccchhhhcccC-CceeEeccCccCC-ChhheecCceEEccccccc
Confidence 445679999995 46543222222322222 5778777776654 3777889999999987653
No 290
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=58.67 E-value=2.4 Score=47.81 Aligned_cols=60 Identities=22% Similarity=0.509 Sum_probs=42.2
Q ss_pred cccccccCCCCCCc-----cccccCcccchhhhhhhccCCCCCCCCcchhhcccccceeccccccc
Q 001840 718 SAICCVCSDPPEDS-----VVTMCGHVFCYQCASEYITGDDNMCPAPRCKEQLGADVVFSKTTLKN 778 (1007)
Q Consensus 718 ~~~C~~c~d~~~~~-----v~t~CgH~~c~~ci~~~~~~~~~~cp~~~cr~~l~~~~~~~~~~l~~ 778 (1007)
..+|++|+|....+ +...|||.|-.+|++.|+. ....--||.|.+..-+..++....++.
T Consensus 4 g~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~-k~~~~~cp~c~~katkr~i~~e~alR~ 68 (463)
T KOG1645|consen 4 GTTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLG-KKTKMQCPLCSGKATKRQIRPEYALRV 68 (463)
T ss_pred cccCceeeeeeeecCceEEeeecccccccHHHHHHHHh-hhhhhhCcccCChhHHHHHHHHHHHHH
Confidence 35799999986654 6679999999999999994 333333346877766666655544443
No 291
>PF04641 Rtf2: Rtf2 RING-finger
Probab=57.63 E-value=7.6 Score=42.59 Aligned_cols=51 Identities=22% Similarity=0.449 Sum_probs=38.0
Q ss_pred ccccccccCCCCCC----ccccccCcccchhhhhhhccCCCCCCCCcchhhccccccee
Q 001840 717 SSAICCVCSDPPED----SVVTMCGHVFCYQCASEYITGDDNMCPAPRCKEQLGADVVF 771 (1007)
Q Consensus 717 ~~~~C~~c~d~~~~----~v~t~CgH~~c~~ci~~~~~~~~~~cp~~~cr~~l~~~~~~ 771 (1007)
....|+++...+.. ..+-.|||+||+.|+.++- ....|| .|...+...+++
T Consensus 112 ~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~k--~~~~Cp--~c~~~f~~~DiI 166 (260)
T PF04641_consen 112 GRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKELK--KSKKCP--VCGKPFTEEDII 166 (260)
T ss_pred ceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhhc--cccccc--ccCCccccCCEE
Confidence 45689999877643 4677999999999999983 344576 688777766554
No 292
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=57.43 E-value=28 Score=42.30 Aligned_cols=100 Identities=18% Similarity=0.269 Sum_probs=65.6
Q ss_pred eEEEEecchhHHHHHHHHHhhc---------CCeEEEecCCCChHHHHHHHHhhccC-cccceeeeeccCcccccccccC
Q 001840 854 KSIVFSQWTRMLDLVENSLNQH---------CIQYRRLDGTMSLPARDRAVKDFNTD-REITVMLMSLKAGNLGLNMVAA 923 (1007)
Q Consensus 854 KvIIFsq~~~~ld~L~~~L~~~---------gi~~~~i~Gs~s~~~R~~~I~~F~~~-~~~~VlLlStkagg~GLNL~~A 923 (1007)
-+|||----+-++..++.|.+. .+-++-|+.+.+.+...++ |..- ++.+-+++.|..+-+.|.....
T Consensus 475 DILVFltGQeEIEt~~e~l~~~~~~LGski~eliv~PiYaNLPselQakI---FePtP~gaRKVVLATNIAETSlTIdgI 551 (902)
T KOG0923|consen 475 DILVFLTGQEEIETVKENLKERCRRLGSKIRELIVLPIYANLPSELQAKI---FEPTPPGARKVVLATNIAETSLTIDGI 551 (902)
T ss_pred cEEEEeccHHHHHHHHHHHHHHHHHhccccceEEEeeccccCChHHHHhh---cCCCCCCceeEEEeecchhhceeecCe
Confidence 6789977666666666666544 2456778899987665544 6543 3455555677888888877776
Q ss_pred CEEEEecCCC------CC--------------ChhHHHhHhhhccCCcccEEEEEEEe
Q 001840 924 SHVILLDLWW------NP--------------TTEDQAVDRAHRIGQTRPVTVTRLTI 961 (1007)
Q Consensus 924 ~~VI~~Dp~W------Np--------------~~e~QaigRi~RiGQ~k~V~VyrLi~ 961 (1007)
.+|| ||.+ || +.-.||.||++|.|--+ -|||++
T Consensus 552 ~yVi--DpGf~K~nsynprtGmesL~v~piSKAsA~QRaGRAGRtgPGK---CfRLYt 604 (902)
T KOG0923|consen 552 KYVI--DPGFVKQNSYNPRTGMESLLVTPISKASANQRAGRAGRTGPGK---CFRLYT 604 (902)
T ss_pred EEEe--cCccccccCcCCCcCceeEEEeeechhhhhhhccccCCCCCCc---eEEeec
Confidence 6665 5543 33 45668888888887555 455554
No 293
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=57.15 E-value=57 Score=38.17 Aligned_cols=21 Identities=29% Similarity=0.232 Sum_probs=16.8
Q ss_pred ceeecCCCCchHHHHHHHHHh
Q 001840 299 GILADDQGLGKTISIIALIQM 319 (1007)
Q Consensus 299 GILADdmGLGKTiqaIali~~ 319 (1007)
-+|--..|+|||..+-|+...
T Consensus 139 l~l~G~~G~GKThL~~ai~~~ 159 (405)
T TIGR00362 139 LFIYGGVGLGKTHLLHAIGNE 159 (405)
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 468889999999988777643
No 294
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=57.10 E-value=50 Score=39.28 Aligned_cols=21 Identities=29% Similarity=0.260 Sum_probs=17.1
Q ss_pred ceeecCCCCchHHHHHHHHHh
Q 001840 299 GILADDQGLGKTISIIALIQM 319 (1007)
Q Consensus 299 GILADdmGLGKTiqaIali~~ 319 (1007)
-+|.-..|+|||-.+-|+...
T Consensus 151 l~l~G~~G~GKThL~~ai~~~ 171 (450)
T PRK00149 151 LFIYGGVGLGKTHLLHAIGNY 171 (450)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 578899999999988777644
No 295
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=56.84 E-value=61 Score=41.58 Aligned_cols=43 Identities=21% Similarity=0.176 Sum_probs=28.4
Q ss_pred chHHHHHHHHHHHhhhcCCCccCceeecCCCCchHHHHHHHHHhhc
Q 001840 276 LKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQR 321 (1007)
Q Consensus 276 rpyQ~~~v~wml~~e~~~~~~~GGILADdmGLGKTiqaIali~~~~ 321 (1007)
.++-+..|..++...+.. ..-||.-.-|+|||..+..|+..+.
T Consensus 20 qe~v~~~L~~~i~~~ri~---Ha~Lf~Gp~G~GKTt~A~~lAr~L~ 62 (824)
T PRK07764 20 QEHVTEPLSTALDSGRIN---HAYLFSGPRGCGKTSSARILARSLN 62 (824)
T ss_pred cHHHHHHHHHHHHhCCCC---ceEEEECCCCCCHHHHHHHHHHHhC
Confidence 344455566666543321 2237889999999999888875543
No 296
>PF13245 AAA_19: Part of AAA domain
Probab=56.55 E-value=22 Score=31.02 Aligned_cols=22 Identities=27% Similarity=0.344 Sum_probs=17.4
Q ss_pred eeecCCCCchHHHHHHHHHhhc
Q 001840 300 ILADDQGLGKTISIIALIQMQR 321 (1007)
Q Consensus 300 ILADdmGLGKTiqaIali~~~~ 321 (1007)
++--..|.|||-+++.++....
T Consensus 14 vv~g~pGtGKT~~~~~~i~~l~ 35 (76)
T PF13245_consen 14 VVQGPPGTGKTTTLAARIAELL 35 (76)
T ss_pred EEECCCCCCHHHHHHHHHHHHH
Confidence 4577899999988888886643
No 297
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=56.38 E-value=29 Score=41.33 Aligned_cols=22 Identities=27% Similarity=0.249 Sum_probs=18.3
Q ss_pred ceeecCCCCchHHHHHHHHHhh
Q 001840 299 GILADDQGLGKTISIIALIQMQ 320 (1007)
Q Consensus 299 GILADdmGLGKTiqaIali~~~ 320 (1007)
-|+.-+.|.|||-.|..++...
T Consensus 43 ~Lf~GP~GtGKTTlAriLAk~L 64 (484)
T PRK14956 43 YIFFGPRGVGKTTIARILAKRL 64 (484)
T ss_pred EEEECCCCCCHHHHHHHHHHhc
Confidence 3889999999999888887553
No 298
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=56.05 E-value=42 Score=39.05 Aligned_cols=55 Identities=15% Similarity=0.210 Sum_probs=34.6
Q ss_pred eeEEEEccCcccCCcccHHH---HHHHhcc--cCcEEEEeccCCCCChhHHHHHHHHHhc
Q 001840 512 WFRVVLDEAQTIKNHRTQVA---RACCSLR--AKRRWCLSGTPIQNSIDDLYSYFRFLKY 566 (1007)
Q Consensus 512 w~rVIlDEAH~iKN~~s~~~---kal~~L~--a~~r~lLTGTPi~N~l~DL~sll~fL~~ 566 (1007)
+++||||++.+.....-... +.+..+. ....++|+||=-++.+.+++.-+..+.+
T Consensus 255 ~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~~~~~~~~~~~~~~~~ 314 (388)
T PRK12723 255 FDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKTSDVKEIFHQFSPFSY 314 (388)
T ss_pred CCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCHHHHHHHHHHhcCCCC
Confidence 67899999988653222222 2222222 2467899999887777777666655544
No 299
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=56.00 E-value=46 Score=41.49 Aligned_cols=73 Identities=14% Similarity=0.127 Sum_probs=51.6
Q ss_pred eEEEEecchhHHHHHHHHH----hhcCCeEEEecCCCChHHHHHHHHhhccCcccceeeeeccCcccccccccCCEEE
Q 001840 854 KSIVFSQWTRMLDLVENSL----NQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVI 927 (1007)
Q Consensus 854 KvIIFsq~~~~ld~L~~~L----~~~gi~~~~i~Gs~s~~~R~~~I~~F~~~~~~~VlLlStkagg~GLNL~~A~~VI 927 (1007)
+++|-+.....+.-+.+.+ ...|+++..++|+++.++|...++...++ ++.|++.+....-..+.+.....||
T Consensus 286 qvlilaPT~~LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g-~~~IiVgT~~ll~~~~~~~~l~lvV 362 (630)
T TIGR00643 286 QVALMAPTEILAEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASG-QIHLVVGTHALIQEKVEFKRLALVI 362 (630)
T ss_pred cEEEECCHHHHHHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCC-CCCEEEecHHHHhccccccccceEE
Confidence 8888888877766555544 44589999999999999999988888754 5667776654444445554444333
No 300
>COG3421 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=55.85 E-value=11 Score=44.95 Aligned_cols=17 Identities=35% Similarity=0.442 Sum_probs=15.0
Q ss_pred CCCCchHHHHHHHHHhh
Q 001840 304 DQGLGKTISIIALIQMQ 320 (1007)
Q Consensus 304 dmGLGKTiqaIali~~~ 320 (1007)
.+|.|||++|.+||+..
T Consensus 5 atgsgkt~~ma~lil~~ 21 (812)
T COG3421 5 ATGSGKTLVMAGLILEC 21 (812)
T ss_pred ccCCChhhHHHHHHHHH
Confidence 57999999999999874
No 301
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=55.17 E-value=54 Score=42.89 Aligned_cols=56 Identities=18% Similarity=0.329 Sum_probs=38.1
Q ss_pred CCceEEEcChhhH-----HHHHHHHHHHcCCCCCeEEEEEeCCCCCCCccccCCCcEEEechhhhh
Q 001840 384 AAGTLVVCPASVL-----RQWARELEDKVPDKAALSVLIYHGGSRTKDPVELAKYDVVLTTYSIVT 444 (1007)
Q Consensus 384 ~~~tLIV~P~sLl-----~QW~~Ei~k~~~~~~~l~vlv~~g~~r~~~~~~l~~~dVVItSy~~l~ 444 (1007)
.++..-|.|...+ .-|..-|.+-. .+.++ --|+....+.+.+...+|+|.|.+.+.
T Consensus 1186 ~~~~vyi~p~~~i~~~~~~~w~~~f~~~~----G~~~~-~l~ge~s~~lkl~~~~~vii~tpe~~d 1246 (1674)
T KOG0951|consen 1186 IGRAVYIAPLEEIADEQYRDWEKKFSKLL----GLRIV-KLTGETSLDLKLLQKGQVIISTPEQWD 1246 (1674)
T ss_pred ceEEEEecchHHHHHHHHHHHHHhhcccc----CceEE-ecCCccccchHHhhhcceEEechhHHH
Confidence 4557888998754 34777766542 34444 445556667778889999999987654
No 302
>PRK08084 DNA replication initiation factor; Provisional
Probab=55.00 E-value=84 Score=33.78 Aligned_cols=20 Identities=20% Similarity=0.160 Sum_probs=15.6
Q ss_pred ceeecCCCCchHHHHHHHHH
Q 001840 299 GILADDQGLGKTISIIALIQ 318 (1007)
Q Consensus 299 GILADdmGLGKTiqaIali~ 318 (1007)
-+|.=..|.|||--+-++..
T Consensus 48 l~l~Gp~G~GKThLl~a~~~ 67 (235)
T PRK08084 48 IYLWSREGAGRSHLLHAACA 67 (235)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 47888999999977666553
No 303
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=54.76 E-value=98 Score=39.82 Aligned_cols=42 Identities=17% Similarity=0.260 Sum_probs=30.1
Q ss_pred ccCchHHHHHHHHHHHhhhcCCCccCceeecCCCCchHHHHHHHHHhhc
Q 001840 273 VNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQR 321 (1007)
Q Consensus 273 ~~LrpyQ~~~v~wml~~e~~~~~~~GGILADdmGLGKTiqaIali~~~~ 321 (1007)
.+-..++.+-+....+... -++.-|.|-|||.|+--+|+...
T Consensus 172 LPa~~~r~~Il~~i~~~qV-------vvIsGeTGcGKTTQvpQfiLd~~ 213 (924)
T KOG0920|consen 172 LPAYKMRDTILDAIEENQV-------VVISGETGCGKTTQVPQFILDEA 213 (924)
T ss_pred CccHHHHHHHHHHHHhCce-------EEEeCCCCCCchhhhhHHHHHHH
Confidence 3445666666666553322 48899999999999999997643
No 304
>PF13607 Succ_CoA_lig: Succinyl-CoA ligase like flavodoxin domain; PDB: 2CSU_A.
Probab=54.39 E-value=44 Score=32.88 Aligned_cols=86 Identities=17% Similarity=0.096 Sum_probs=56.4
Q ss_pred eEEEEecchhHHHHHHHHHhhcCCe--EEEecCCCChHHHHHHHHhhccCcccceeeeeccCcccccccccCCEEEEecC
Q 001840 854 KSIVFSQWTRMLDLVENSLNQHCIQ--YRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDL 931 (1007)
Q Consensus 854 KvIIFsq~~~~ld~L~~~L~~~gi~--~~~i~Gs~s~~~R~~~I~~F~~~~~~~VlLlStkagg~GLNL~~A~~VI~~Dp 931 (1007)
.|=++||.-.+...+-..+..+|+. ++.=.|....-.-.++++.|.+|++.+++++-.. .
T Consensus 3 ~valisQSG~~~~~~~~~~~~~g~g~s~~vs~Gn~~dv~~~d~l~~~~~D~~t~~I~ly~E------------------~ 64 (138)
T PF13607_consen 3 GVALISQSGALGTAILDWAQDRGIGFSYVVSVGNEADVDFADLLEYLAEDPDTRVIVLYLE------------------G 64 (138)
T ss_dssp SEEEEES-HHHHHHHHHHHHHTT-EESEEEE-TT-SSS-HHHHHHHHCT-SS--EEEEEES-------------------
T ss_pred CEEEEECCHHHHHHHHHHHHHcCCCeeEEEEeCccccCCHHHHHHHHhcCCCCCEEEEEcc------------------C
Confidence 6779999999999999999988655 4555677666677789999999999998887644 3
Q ss_pred CCCCChhHHHhHhhhccCCcccEEEEEEE
Q 001840 932 WWNPTTEDQAVDRAHRIGQTRPVTVTRLT 960 (1007)
Q Consensus 932 ~WNp~~e~QaigRi~RiGQ~k~V~VyrLi 960 (1007)
.=||....++.-|+.|- |||.+++-=
T Consensus 65 ~~d~~~f~~~~~~a~~~---KPVv~lk~G 90 (138)
T PF13607_consen 65 IGDGRRFLEAARRAARR---KPVVVLKAG 90 (138)
T ss_dssp -S-HHHHHHHHHHHCCC---S-EEEEE--
T ss_pred CCCHHHHHHHHHHHhcC---CCEEEEeCC
Confidence 44677777777766654 999987754
No 305
>PRK06526 transposase; Provisional
Probab=54.12 E-value=45 Score=36.41 Aligned_cols=23 Identities=26% Similarity=0.151 Sum_probs=18.9
Q ss_pred cCceeecCCCCchHHHHHHHHHh
Q 001840 297 LGGILADDQGLGKTISIIALIQM 319 (1007)
Q Consensus 297 ~GGILADdmGLGKTiqaIali~~ 319 (1007)
.+-+|.-..|.|||..+.++...
T Consensus 99 ~nlll~Gp~GtGKThLa~al~~~ 121 (254)
T PRK06526 99 ENVVFLGPPGTGKTHLAIGLGIR 121 (254)
T ss_pred ceEEEEeCCCCchHHHHHHHHHH
Confidence 34688889999999999988744
No 306
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=53.81 E-value=20 Score=43.26 Aligned_cols=45 Identities=22% Similarity=0.112 Sum_probs=34.9
Q ss_pred CchHHHHHHHHHHHhhh-----cCCCccCceeecCCCCchHHHHHHHHHh
Q 001840 275 LLKHQKIALAWMLQKET-----RSLHCLGGILADDQGLGKTISIIALIQM 319 (1007)
Q Consensus 275 LrpyQ~~~v~wml~~e~-----~~~~~~GGILADdmGLGKTiqaIali~~ 319 (1007)
.....++++.|.+.+.. .-..++|.||+-..|.|||+.|-|+...
T Consensus 250 ~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~ 299 (494)
T COG0464 250 AKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALE 299 (494)
T ss_pred HHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhh
Confidence 56777888888876554 2234578899999999999999888853
No 307
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=53.74 E-value=45 Score=40.72 Aligned_cols=28 Identities=18% Similarity=0.210 Sum_probs=19.4
Q ss_pred cccccccCCEEEEecCCCCCChhHHHhHhh
Q 001840 916 LGLNMVAASHVILLDLWWNPTTEDQAVDRA 945 (1007)
Q Consensus 916 ~GLNL~~A~~VI~~Dp~WNp~~e~QaigRi 945 (1007)
.|+ -.-++||++++--.-..+.|+.--+
T Consensus 932 ~g~--y~p~Yivyhel~~T~keym~cvT~v 959 (1042)
T KOG0924|consen 932 HGL--YTPDYIVYHELLMTTKEYMQCVTSV 959 (1042)
T ss_pred hcC--CCCCeeeehHHHHhHHHHHHHHhhC
Confidence 455 4467888888887777777776543
No 308
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=53.02 E-value=49 Score=40.66 Aligned_cols=21 Identities=29% Similarity=0.355 Sum_probs=18.0
Q ss_pred eeecCCCCchHHHHHHHHHhh
Q 001840 300 ILADDQGLGKTISIIALIQMQ 320 (1007)
Q Consensus 300 ILADdmGLGKTiqaIali~~~ 320 (1007)
|+.-.-|.|||-.|.+++...
T Consensus 39 Lf~Gp~G~GKTt~A~~lAk~l 59 (584)
T PRK14952 39 LFSGPRGCGKTSSARILARSL 59 (584)
T ss_pred EEECCCCCCHHHHHHHHHHHh
Confidence 788999999999998888554
No 309
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=52.87 E-value=76 Score=40.41 Aligned_cols=42 Identities=17% Similarity=0.203 Sum_probs=31.3
Q ss_pred cccCchHHHHHHHHHHHhhhcCCCccCceeecCCCCchHHHHHHHHHh
Q 001840 272 SVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQM 319 (1007)
Q Consensus 272 ~~~LrpyQ~~~v~wml~~e~~~~~~~GGILADdmGLGKTiqaIali~~ 319 (1007)
...|-+-|+.++.-++... .. .+|---.|.|||..+-+++..
T Consensus 350 ~~~Ls~~Q~~Av~~i~~s~--~~----~il~G~aGTGKTtll~~i~~~ 391 (744)
T TIGR02768 350 HYRLSEEQYEAVRHVTGSG--DI----AVVVGRAGTGKSTMLKAAREA 391 (744)
T ss_pred cCCCCHHHHHHHHHHhcCC--CE----EEEEecCCCCHHHHHHHHHHH
Confidence 3568899999999887421 11 488889999999887776643
No 310
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=51.74 E-value=9.4 Score=30.98 Aligned_cols=45 Identities=29% Similarity=0.611 Sum_probs=31.1
Q ss_pred ccccccCCCCCCccccccCcccchhhhhhhccCCCCCCCCcchhhccccc
Q 001840 719 AICCVCSDPPEDSVVTMCGHVFCYQCASEYITGDDNMCPAPRCKEQLGAD 768 (1007)
Q Consensus 719 ~~C~~c~d~~~~~v~t~CgH~~c~~ci~~~~~~~~~~cp~~~cr~~l~~~ 768 (1007)
..|..|.......++..|||+.|..|..-. +=+-|| .|...+...
T Consensus 8 ~~~~~~~~~~~~~~~~pCgH~I~~~~f~~~---rYngCP--fC~~~~~~~ 52 (55)
T PF14447_consen 8 QPCVFCGFVGTKGTVLPCGHLICDNCFPGE---RYNGCP--FCGTPFEFD 52 (55)
T ss_pred eeEEEccccccccccccccceeeccccChh---hccCCC--CCCCcccCC
Confidence 457777777777889999999999996531 123455 566665543
No 311
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=51.13 E-value=92 Score=40.03 Aligned_cols=21 Identities=19% Similarity=0.271 Sum_probs=17.7
Q ss_pred eeecCCCCchHHHHHHHHHhh
Q 001840 300 ILADDQGLGKTISIIALIQMQ 320 (1007)
Q Consensus 300 ILADdmGLGKTiqaIali~~~ 320 (1007)
||.=+.|.|||..+-+++...
T Consensus 42 LFtGPpGtGKTTLARiLAk~L 62 (944)
T PRK14949 42 LFTGTRGVGKTSLARLFAKGL 62 (944)
T ss_pred EEECCCCCCHHHHHHHHHHhc
Confidence 789999999999888887543
No 312
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=50.44 E-value=1.7e+02 Score=32.46 Aligned_cols=21 Identities=33% Similarity=0.433 Sum_probs=17.2
Q ss_pred ceeecCCCCchHHHHHHHHHh
Q 001840 299 GILADDQGLGKTISIIALIQM 319 (1007)
Q Consensus 299 GILADdmGLGKTiqaIali~~ 319 (1007)
.+|.=+.|.|||..+-+++..
T Consensus 41 ~ll~G~~G~GKt~~~~~l~~~ 61 (319)
T PRK00440 41 LLFAGPPGTGKTTAALALARE 61 (319)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 588999999999988777643
No 313
>PRK08116 hypothetical protein; Validated
Probab=50.39 E-value=1.3e+02 Score=33.21 Aligned_cols=23 Identities=26% Similarity=0.302 Sum_probs=19.3
Q ss_pred cCceeecCCCCchHHHHHHHHHh
Q 001840 297 LGGILADDQGLGKTISIIALIQM 319 (1007)
Q Consensus 297 ~GGILADdmGLGKTiqaIali~~ 319 (1007)
.|-+|.=+.|.|||.-+.|++..
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~ 137 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANE 137 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 56788999999999988887754
No 314
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=50.28 E-value=1.5e+02 Score=35.23 Aligned_cols=21 Identities=24% Similarity=0.245 Sum_probs=16.5
Q ss_pred ceeecCCCCchHHHHHHHHHh
Q 001840 299 GILADDQGLGKTISIIALIQM 319 (1007)
Q Consensus 299 GILADdmGLGKTiqaIali~~ 319 (1007)
-+|.-..|+|||--+-|+...
T Consensus 133 l~lyG~~G~GKTHLl~ai~~~ 153 (440)
T PRK14088 133 LFIYGGVGLGKTHLLQSIGNY 153 (440)
T ss_pred EEEEcCCCCcHHHHHHHHHHH
Confidence 478889999999877776643
No 315
>PRK10824 glutaredoxin-4; Provisional
Probab=50.24 E-value=60 Score=30.88 Aligned_cols=61 Identities=7% Similarity=0.011 Sum_probs=41.1
Q ss_pred eEEEEec------chhHHHHHHHHHhhcCCeEEEecCCCChHHHHHHHHhhccC-cccceeeeeccCcc
Q 001840 854 KSIVFSQ------WTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTD-REITVMLMSLKAGN 915 (1007)
Q Consensus 854 KvIIFsq------~~~~ld~L~~~L~~~gi~~~~i~Gs~s~~~R~~~I~~F~~~-~~~~VlLlStkagg 915 (1007)
+|+||+. +--....+...|...|+.|..++=....+.|. .+.++..- .-++||+-..-.||
T Consensus 16 ~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~~i~~~~idi~~d~~~~~-~l~~~sg~~TVPQIFI~G~~IGG 83 (115)
T PRK10824 16 PILLYMKGSPKLPSCGFSAQAVQALSACGERFAYVDILQNPDIRA-ELPKYANWPTFPQLWVDGELVGG 83 (115)
T ss_pred CEEEEECCCCCCCCCchHHHHHHHHHHcCCCceEEEecCCHHHHH-HHHHHhCCCCCCeEEECCEEEcC
Confidence 9999997 55678888889999998877766544444444 45555432 34567776655554
No 316
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=50.14 E-value=11 Score=44.74 Aligned_cols=54 Identities=30% Similarity=0.719 Sum_probs=42.9
Q ss_pred ccccccccCCCCCC-ccccccCcccchhhhhhhccC----C-C--CCCCCcchhhcccccce
Q 001840 717 SSAICCVCSDPPED-SVVTMCGHVFCYQCASEYITG----D-D--NMCPAPRCKEQLGADVV 770 (1007)
Q Consensus 717 ~~~~C~~c~d~~~~-~v~t~CgH~~c~~ci~~~~~~----~-~--~~cp~~~cr~~l~~~~~ 770 (1007)
....|.+|.+.... .+...|||.||..|+..|++. + . -.||...|...+..+.+
T Consensus 69 ~~~~c~ic~~~~~~~~~~~~c~H~~c~~cw~~yl~~kI~~~~~~~i~cp~~~C~a~v~~~~i 130 (444)
T KOG1815|consen 69 GDVQCGICVESYDGEIIGLGCGHPFCPPCWTGYLGTKIHEGEEAKIKCPAHGCPALVGEDTV 130 (444)
T ss_pred ccccCCcccCCCcchhhhcCCCcHHHHHHHHHHhhheeeccccccccCCCCCccccCCCcee
Confidence 45789999887775 777899999999999998863 1 2 36899999988876654
No 317
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=50.03 E-value=58 Score=29.21 Aligned_cols=44 Identities=16% Similarity=0.120 Sum_probs=33.4
Q ss_pred eEEEEec------chhHHHHHHHHHhhcCCeEEEecCCCChHHHHHHHHh
Q 001840 854 KSIVFSQ------WTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKD 897 (1007)
Q Consensus 854 KvIIFsq------~~~~ld~L~~~L~~~gi~~~~i~Gs~s~~~R~~~I~~ 897 (1007)
+|+||+. +-.....+.+.|...|+.|..++=....+.|+.+.+.
T Consensus 9 ~vvvf~k~~~~~~~Cp~C~~ak~~L~~~~i~y~~idv~~~~~~~~~l~~~ 58 (90)
T cd03028 9 PVVLFMKGTPEEPRCGFSRKVVQILNQLGVDFGTFDILEDEEVRQGLKEY 58 (90)
T ss_pred CEEEEEcCCCCCCCCcHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHHHHH
Confidence 9999987 5667888999999999999998865555545444443
No 318
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=50.01 E-value=2.4e+02 Score=35.45 Aligned_cols=53 Identities=11% Similarity=0.084 Sum_probs=31.5
Q ss_pred ceeEEEEccCcccCCcccHHHHHHHhc---ccCcEEEEeccCCCCChhHHHHHHHHHh
Q 001840 511 GWFRVVLDEAQTIKNHRTQVARACCSL---RAKRRWCLSGTPIQNSIDDLYSYFRFLK 565 (1007)
Q Consensus 511 ~w~rVIlDEAH~iKN~~s~~~kal~~L---~a~~r~lLTGTPi~N~l~DL~sll~fL~ 565 (1007)
.+.+|||||+|.+... .....++.| ....+++|+.|=...-+.-+.+-+..+.
T Consensus 119 k~KVIIIDEad~Ls~~--A~NALLKtLEEPp~~v~fILaTtd~~kL~~TIrSRC~~f~ 174 (709)
T PRK08691 119 KYKVYIIDEVHMLSKS--AFNAMLKTLEEPPEHVKFILATTDPHKVPVTVLSRCLQFV 174 (709)
T ss_pred CcEEEEEECccccCHH--HHHHHHHHHHhCCCCcEEEEEeCCccccchHHHHHHhhhh
Confidence 3568999999998532 222334444 3455778877755555555555444444
No 319
>PHA03368 DNA packaging terminase subunit 1; Provisional
Probab=49.74 E-value=64 Score=39.84 Aligned_cols=40 Identities=20% Similarity=0.158 Sum_probs=25.1
Q ss_pred ccccceeEEEEccCcccCCcccHHHHHHHhc--ccCcEEEEecc
Q 001840 507 LAKVGWFRVVLDEAQTIKNHRTQVARACCSL--RAKRRWCLSGT 548 (1007)
Q Consensus 507 L~~~~w~rVIlDEAH~iKN~~s~~~kal~~L--~a~~r~lLTGT 548 (1007)
+....++++||||||.|+.. .....+-.+ .....|.+|-|
T Consensus 348 iRGqtfDLLIVDEAqFIk~~--al~~ilp~l~~~n~k~I~ISS~ 389 (738)
T PHA03368 348 IRGQDFNLLFVDEANFIRPD--AVQTIMGFLNQTNCKIIFVSST 389 (738)
T ss_pred ccCCcccEEEEechhhCCHH--HHHHHHHHHhccCccEEEEecC
Confidence 44557999999999999863 222222222 34456777755
No 320
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=49.34 E-value=7.6 Score=44.54 Aligned_cols=38 Identities=26% Similarity=0.707 Sum_probs=31.0
Q ss_pred ccccccccCCCCCCc----cccccCcccchhhhhhhccCCCCCCC
Q 001840 717 SSAICCVCSDPPEDS----VVTMCGHVFCYQCASEYITGDDNMCP 757 (1007)
Q Consensus 717 ~~~~C~~c~d~~~~~----v~t~CgH~~c~~ci~~~~~~~~~~cp 757 (1007)
..+.|++|++.++.. +-+.|.|.|-..|+..|... .||
T Consensus 174 ELPTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w~~~---scp 215 (493)
T KOG0804|consen 174 ELPTCPVCLERMDSSTTGILTILCNHSFHCSCLMKWWDS---SCP 215 (493)
T ss_pred cCCCcchhHhhcCccccceeeeecccccchHHHhhcccC---cCh
Confidence 578999999988765 46699999999999988653 455
No 321
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=48.77 E-value=41 Score=41.05 Aligned_cols=114 Identities=19% Similarity=0.283 Sum_probs=77.5
Q ss_pred eEEEEecch----hHHHHHHHHHhhc------CCeEEEecCCCChHHHHHHHHhhcc-CcccceeeeeccCccccccccc
Q 001840 854 KSIVFSQWT----RMLDLVENSLNQH------CIQYRRLDGTMSLPARDRAVKDFNT-DREITVMLMSLKAGNLGLNMVA 922 (1007)
Q Consensus 854 KvIIFsq~~----~~ld~L~~~L~~~------gi~~~~i~Gs~s~~~R~~~I~~F~~-~~~~~VlLlStkagg~GLNL~~ 922 (1007)
-+|||-.-. .+.+.|.+.|.+. ++.+.-|...++.+-..+ =|+. .++++-.+++|..+-+.|....
T Consensus 565 dilIfmtGqediE~t~~~i~~~l~ql~~~~~~~L~vlpiYSQLp~dlQ~k---iFq~a~~~vRK~IvATNIAETSLTi~g 641 (1042)
T KOG0924|consen 565 DILIFMTGQEDIECTCDIIKEKLEQLDSAPTTDLAVLPIYSQLPADLQAK---IFQKAEGGVRKCIVATNIAETSLTIPG 641 (1042)
T ss_pred CEEEecCCCcchhHHHHHHHHHHHhhhcCCCCceEEEeehhhCchhhhhh---hcccCCCCceeEEEeccchhhceeecc
Confidence 678886433 4456666666654 577888888888655443 3663 4567777888899999999888
Q ss_pred CCEEEEecC----CCCC-----------ChhHHHhHhhhccCCcccEEEEEEEeCCCHHHHHH
Q 001840 923 ASHVILLDL----WWNP-----------TTEDQAVDRAHRIGQTRPVTVTRLTIRDTVEDRIL 970 (1007)
Q Consensus 923 A~~VI~~Dp----~WNp-----------~~e~QaigRi~RiGQ~k~V~VyrLi~~~TIEe~I~ 970 (1007)
..+||=-.. -+|| ....||--|++|-|.+.|=+-|||+++++....++
T Consensus 642 I~yVID~Gy~K~kvyn~~~G~D~L~~~pIS~AnA~QRaGRAGRt~pG~cYRlYTe~ay~~eml 704 (1042)
T KOG0924|consen 642 IRYVIDTGYCKLKVYNPRIGMDALQIVPISQANADQRAGRAGRTGPGTCYRLYTEDAYKNEML 704 (1042)
T ss_pred eEEEEecCceeeeecccccccceeEEEechhccchhhccccCCCCCcceeeehhhhHHHhhcc
Confidence 877762111 1333 33345555666666677889999999988776655
No 322
>COG4626 Phage terminase-like protein, large subunit [General function prediction only]
Probab=48.28 E-value=79 Score=38.04 Aligned_cols=49 Identities=16% Similarity=0.104 Sum_probs=32.9
Q ss_pred cccCchHHHHHHHHHHH---hhhcCCCccCceeecCCCCchHHHHHHHHHhh
Q 001840 272 SVNLLKHQKIALAWMLQ---KETRSLHCLGGILADDQGLGKTISIIALIQMQ 320 (1007)
Q Consensus 272 ~~~LrpyQ~~~v~wml~---~e~~~~~~~GGILADdmGLGKTiqaIali~~~ 320 (1007)
...|.|||+..+.-++- .++...+-.-++|.-.=|=|||-.+.+++.+.
T Consensus 59 p~~l~PwQkFiia~l~G~~~k~T~~rrf~e~fI~v~RkngKt~l~A~i~~~~ 110 (546)
T COG4626 59 PESLEPWQKFIVAALFGFYDKQTGIRRFKEAFIFIPRKNGKSTLAAGIMMTA 110 (546)
T ss_pred ccccchHHHHHHHHHhceeecCCCceEEEEEEEEEecCCchHHHHHHHHHHH
Confidence 56899999999887762 22211112335777778889998877676553
No 323
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=46.91 E-value=66 Score=39.60 Aligned_cols=21 Identities=29% Similarity=0.336 Sum_probs=16.8
Q ss_pred ceeecCCCCchHHHHHHHHHh
Q 001840 299 GILADDQGLGKTISIIALIQM 319 (1007)
Q Consensus 299 GILADdmGLGKTiqaIali~~ 319 (1007)
-+|.-..|+|||--+-|+...
T Consensus 317 L~LyG~sGsGKTHLL~AIa~~ 337 (617)
T PRK14086 317 LFIYGESGLGKTHLLHAIGHY 337 (617)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 478899999999877776644
No 324
>PF13173 AAA_14: AAA domain
Probab=46.68 E-value=18 Score=34.72 Aligned_cols=36 Identities=14% Similarity=0.212 Sum_probs=23.6
Q ss_pred eEEEEccCcccCCcccHHHHHHHhcccCcEEEEeccC
Q 001840 513 FRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTP 549 (1007)
Q Consensus 513 ~rVIlDEAH~iKN~~s~~~kal~~L~a~~r~lLTGTP 549 (1007)
.+|||||+|++.+..... +.+..-....++++||.-
T Consensus 63 ~~i~iDEiq~~~~~~~~l-k~l~d~~~~~~ii~tgS~ 98 (128)
T PF13173_consen 63 KYIFIDEIQYLPDWEDAL-KFLVDNGPNIKIILTGSS 98 (128)
T ss_pred cEEEEehhhhhccHHHHH-HHHHHhccCceEEEEccc
Confidence 479999999997654222 222222235699999974
No 325
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=46.12 E-value=1.6e+02 Score=29.53 Aligned_cols=23 Identities=17% Similarity=0.262 Sum_probs=18.6
Q ss_pred eeecCCCCchHHHHHHHHHhhcc
Q 001840 300 ILADDQGLGKTISIIALIQMQRS 322 (1007)
Q Consensus 300 ILADdmGLGKTiqaIali~~~~~ 322 (1007)
|+.-+-|.||+-.|.+++.....
T Consensus 23 L~~G~~g~gk~~~a~~~a~~ll~ 45 (162)
T PF13177_consen 23 LFHGPSGSGKKTLALAFARALLC 45 (162)
T ss_dssp EEECSTTSSHHHHHHHHHHHHC-
T ss_pred EEECCCCCCHHHHHHHHHHHHcC
Confidence 77888999999999999866443
No 326
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=46.06 E-value=76 Score=26.84 Aligned_cols=57 Identities=11% Similarity=0.198 Sum_probs=39.6
Q ss_pred eEEEEe-cchhHHHHHHHHHhhcCCeEEEecCCCChHHHHHHHHhhccCcccceeeee
Q 001840 854 KSIVFS-QWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMS 910 (1007)
Q Consensus 854 KvIIFs-q~~~~ld~L~~~L~~~gi~~~~i~Gs~s~~~R~~~I~~F~~~~~~~VlLlS 910 (1007)
|+.||+ .+-.....+...|++.++.|..++-....+.++++.+.......+.++++.
T Consensus 1 ~i~ly~~~~Cp~C~~ak~~L~~~~i~~~~i~i~~~~~~~~~~~~~~~~~~~vP~v~i~ 58 (75)
T cd03418 1 KVEIYTKPNCPYCVRAKALLDKKGVDYEEIDVDGDPALREEMINRSGGRRTVPQIFIG 58 (75)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHhCCCCccCEEEEC
Confidence 356666 445677888889999999999998887767777766666543244445544
No 327
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=45.46 E-value=1.3e+02 Score=37.36 Aligned_cols=41 Identities=24% Similarity=0.185 Sum_probs=26.2
Q ss_pred hHHHHHHHHHHHhhhcCCCccCceeecCCCCchHHHHHHHHHhh
Q 001840 277 KHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQ 320 (1007)
Q Consensus 277 pyQ~~~v~wml~~e~~~~~~~GGILADdmGLGKTiqaIali~~~ 320 (1007)
+|-+..+..++...+-+ ..-|+.-..|+|||..+.+++...
T Consensus 22 e~vv~~L~~~l~~~rl~---hAyLf~Gp~GvGKTTlAr~lAk~L 62 (647)
T PRK07994 22 EHVLTALANALDLGRLH---HAYLFSGTRGVGKTTIARLLAKGL 62 (647)
T ss_pred HHHHHHHHHHHHcCCCC---eEEEEECCCCCCHHHHHHHHHHhh
Confidence 44444555665443211 223788999999999888887553
No 328
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=45.41 E-value=94 Score=40.66 Aligned_cols=43 Identities=26% Similarity=0.253 Sum_probs=30.5
Q ss_pred eeEEEEccCcccCCcccHHHHHHHhc-ccCcEEEEeccCCCCChhH
Q 001840 512 WFRVVLDEAQTIKNHRTQVARACCSL-RAKRRWCLSGTPIQNSIDD 556 (1007)
Q Consensus 512 w~rVIlDEAH~iKN~~s~~~kal~~L-~a~~r~lLTGTPi~N~l~D 556 (1007)
-++||||||-.+... ...+.+... ....+++|.|=|-|-..-+
T Consensus 434 ~~vlIVDEASMv~~~--~m~~LL~~a~~~garvVLVGD~~QLpsV~ 477 (988)
T PRK13889 434 RDVLVIDEAGMVGTR--QLERVLSHAADAGAKVVLVGDPQQLQAIE 477 (988)
T ss_pred CcEEEEECcccCCHH--HHHHHHHhhhhCCCEEEEECCHHHcCCCC
Confidence 468999999998644 344555433 5678999999887765543
No 329
>PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=45.35 E-value=1.5e+02 Score=35.63 Aligned_cols=45 Identities=16% Similarity=-0.006 Sum_probs=27.7
Q ss_pred hHHHHHHHHHHHhh--hcCCCccCceeecCCCCchHHHHHHHHHhhc
Q 001840 277 KHQKIALAWMLQKE--TRSLHCLGGILADDQGLGKTISIIALIQMQR 321 (1007)
Q Consensus 277 pyQ~~~v~wml~~e--~~~~~~~GGILADdmGLGKTiqaIali~~~~ 321 (1007)
|+|+.-+..++--. ......+-++|-=.=|=|||..+.+++++..
T Consensus 1 PwQ~fi~~~i~G~~~~~g~rrf~~~~l~v~RkNGKS~l~a~i~ly~l 47 (477)
T PF03354_consen 1 PWQKFILRSIFGWRKDDGRRRFREVYLEVPRKNGKSTLAAAIALYML 47 (477)
T ss_pred CcHHHHHHHHhceEcCCCCEEEEEEEEEEcCccCccHHHHHHHHHHH
Confidence 78888777666321 1111123356666778899998877776543
No 330
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=45.34 E-value=1e+02 Score=33.13 Aligned_cols=21 Identities=38% Similarity=0.507 Sum_probs=17.9
Q ss_pred ceeecCCCCchHHHHHHHHHh
Q 001840 299 GILADDQGLGKTISIIALIQM 319 (1007)
Q Consensus 299 GILADdmGLGKTiqaIali~~ 319 (1007)
-|++-..|.|||-.+.+|+..
T Consensus 51 liisGpPG~GKTTsi~~LAr~ 71 (333)
T KOG0991|consen 51 LIISGPPGTGKTTSILCLARE 71 (333)
T ss_pred eEeeCCCCCchhhHHHHHHHH
Confidence 488999999999998888744
No 331
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=45.07 E-value=42 Score=40.87 Aligned_cols=19 Identities=32% Similarity=0.452 Sum_probs=15.0
Q ss_pred ceeecCCCCchHHHHHHHH
Q 001840 299 GILADDQGLGKTISIIALI 317 (1007)
Q Consensus 299 GILADdmGLGKTiqaIali 317 (1007)
-|+--|+|.|||-|.=-++
T Consensus 283 LiI~GeTGSGKTTQiPQyL 301 (902)
T KOG0923|consen 283 LIIVGETGSGKTTQIPQYL 301 (902)
T ss_pred EEEEcCCCCCccccccHHH
Confidence 3788999999999865444
No 332
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=44.09 E-value=8.3 Score=41.74 Aligned_cols=43 Identities=35% Similarity=0.958 Sum_probs=33.5
Q ss_pred cccccccCCCCCCccccccCcc-cchhhhhhhccCCCCCCCCcchhhcccc
Q 001840 718 SAICCVCSDPPEDSVVTMCGHV-FCYQCASEYITGDDNMCPAPRCKEQLGA 767 (1007)
Q Consensus 718 ~~~C~~c~d~~~~~v~t~CgH~-~c~~ci~~~~~~~~~~cp~~~cr~~l~~ 767 (1007)
...|.||.|.|.+=+...|||. -|.+|-... +.|| .||..+..
T Consensus 300 ~~LC~ICmDaP~DCvfLeCGHmVtCt~CGkrm-----~eCP--ICRqyi~r 343 (350)
T KOG4275|consen 300 RRLCAICMDAPRDCVFLECGHMVTCTKCGKRM-----NECP--ICRQYIVR 343 (350)
T ss_pred HHHHHHHhcCCcceEEeecCcEEeehhhcccc-----ccCc--hHHHHHHH
Confidence 4569999999999999999997 688895443 2565 78876643
No 333
>COG4646 DNA methylase [Transcription / DNA replication, recombination, and repair]
Probab=43.84 E-value=13 Score=42.80 Aligned_cols=31 Identities=29% Similarity=0.498 Sum_probs=27.5
Q ss_pred cCcEEEEeccCCCCChhHHHHHHHHHhcCCc
Q 001840 539 AKRRWCLSGTPIQNSIDDLYSYFRFLKYDPY 569 (1007)
Q Consensus 539 a~~r~lLTGTPi~N~l~DL~sll~fL~~~~~ 569 (1007)
.++..++||||+.|.+.++|++.++|.++.+
T Consensus 473 G~~L~l~sgTpi~ntlgem~~vqRyl~~~al 503 (637)
T COG4646 473 GRALVLASGTPITNTLGEMFSVQRYLGAGAL 503 (637)
T ss_pred CCeEEecCCCchhhhHHhhhhhhhhcCccHH
Confidence 3567899999999999999999999998764
No 334
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=43.68 E-value=1.2e+02 Score=35.43 Aligned_cols=24 Identities=13% Similarity=0.279 Sum_probs=19.3
Q ss_pred CceeecCCCCchHHHHHHHHHhhc
Q 001840 298 GGILADDQGLGKTISIIALIQMQR 321 (1007)
Q Consensus 298 GGILADdmGLGKTiqaIali~~~~ 321 (1007)
+-|+.-..|.|||..|.+++....
T Consensus 38 a~Lf~Gp~G~GKt~lA~~lA~~l~ 61 (394)
T PRK07940 38 AWLFTGPPGSGRSVAARAFAAALQ 61 (394)
T ss_pred EEEEECCCCCcHHHHHHHHHHHhC
Confidence 346889999999999998886543
No 335
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=42.74 E-value=61 Score=40.59 Aligned_cols=47 Identities=13% Similarity=0.063 Sum_probs=35.0
Q ss_pred cccCchHHHHHHHHHHHhhhcCCCccCceeecCCCCchHHHHHHHHHhhc
Q 001840 272 SVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQR 321 (1007)
Q Consensus 272 ~~~LrpyQ~~~v~wml~~e~~~~~~~GGILADdmGLGKTiqaIali~~~~ 321 (1007)
..+.|+.|++...-+...... ..++++=-.+|.|||+..|+.+....
T Consensus 13 ~~~~r~~Q~~~~~~v~~a~~~---~~~~~iEapTGtGKTl~yL~~al~~~ 59 (654)
T COG1199 13 GFEPRPEQREMAEAVAEALKG---GEGLLIEAPTGTGKTLAYLLPALAYA 59 (654)
T ss_pred CCCCCHHHHHHHHHHHHHHcC---CCcEEEECCCCccHHHHHHHHHHHHH
Confidence 457999999988777643332 23478889999999999988876643
No 336
>KOG3579 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=42.43 E-value=9.5 Score=41.05 Aligned_cols=40 Identities=33% Similarity=0.879 Sum_probs=31.3
Q ss_pred ccccccCCCCCCcccccc----CcccchhhhhhhccC----CCCCCCC
Q 001840 719 AICCVCSDPPEDSVVTMC----GHVFCYQCASEYITG----DDNMCPA 758 (1007)
Q Consensus 719 ~~C~~c~d~~~~~v~t~C----gH~~c~~ci~~~~~~----~~~~cp~ 758 (1007)
.-|-+|.+.++|...-.| .|-||..|-.+.|+. .+-+||.
T Consensus 269 LcCTLC~ERLEDTHFVQCPSVp~HKFCFPCSResIK~Qg~sgevYCPS 316 (352)
T KOG3579|consen 269 LCCTLCHERLEDTHFVQCPSVPSHKFCFPCSRESIKQQGASGEVYCPS 316 (352)
T ss_pred eeehhhhhhhccCceeecCCCcccceecccCHHHHHhhcCCCceeCCC
Confidence 347799999999877777 899999999888763 3447774
No 337
>PRK08727 hypothetical protein; Validated
Probab=41.58 E-value=1.3e+02 Score=32.19 Aligned_cols=21 Identities=33% Similarity=0.302 Sum_probs=16.4
Q ss_pred ceeecCCCCchHHHHHHHHHh
Q 001840 299 GILADDQGLGKTISIIALIQM 319 (1007)
Q Consensus 299 GILADdmGLGKTiqaIali~~ 319 (1007)
-+|.-..|.|||--+-|+...
T Consensus 44 l~l~G~~G~GKThL~~a~~~~ 64 (233)
T PRK08727 44 LYLSGPAGTGKTHLALALCAA 64 (233)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 478889999999777776643
No 338
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=41.48 E-value=12 Score=32.21 Aligned_cols=45 Identities=24% Similarity=0.564 Sum_probs=30.5
Q ss_pred cccccCCCCCC--ccccccCcccchhhhhhhccCCCCCCCCcchhhc
Q 001840 720 ICCVCSDPPED--SVVTMCGHVFCYQCASEYITGDDNMCPAPRCKEQ 764 (1007)
Q Consensus 720 ~C~~c~d~~~~--~v~t~CgH~~c~~ci~~~~~~~~~~cp~~~cr~~ 764 (1007)
.|+-|.-|-++ -|...|.|.|-.-||.++++.....--+|.||..
T Consensus 33 ~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~ 79 (84)
T KOG1493|consen 33 CCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQT 79 (84)
T ss_pred cCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCccccccCCcchhe
Confidence 34445444333 3788999999999999998765544344467764
No 339
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=41.12 E-value=27 Score=38.15 Aligned_cols=34 Identities=26% Similarity=0.561 Sum_probs=27.8
Q ss_pred ccccccccCCCCCCccccccCcccchhhhhhhcc
Q 001840 717 SSAICCVCSDPPEDSVVTMCGHVFCYQCASEYIT 750 (1007)
Q Consensus 717 ~~~~C~~c~d~~~~~v~t~CgH~~c~~ci~~~~~ 750 (1007)
.+.+|.+|+..-+...+|.|.|.+-..|+..|++
T Consensus 117 qCvICLygfa~~~~ft~T~C~Hy~H~~ClaRyl~ 150 (368)
T KOG4445|consen 117 QCVICLYGFASSPAFTVTACDHYMHFACLARYLT 150 (368)
T ss_pred ceEEEEEeecCCCceeeehhHHHHHHHHHHHHHH
Confidence 4566777777777789999999999999988876
No 340
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=40.46 E-value=13 Score=40.46 Aligned_cols=28 Identities=36% Similarity=0.796 Sum_probs=19.2
Q ss_pred ccccccCCCCC-CccccccCcccchhhhh
Q 001840 719 AICCVCSDPPE-DSVVTMCGHVFCYQCAS 746 (1007)
Q Consensus 719 ~~C~~c~d~~~-~~v~t~CgH~~c~~ci~ 746 (1007)
-.|..|.-+.. .--...|.|+||++|-.
T Consensus 91 HfCd~Cd~PI~IYGRmIPCkHvFCl~CAr 119 (389)
T KOG2932|consen 91 HFCDRCDFPIAIYGRMIPCKHVFCLECAR 119 (389)
T ss_pred EeecccCCcceeeecccccchhhhhhhhh
Confidence 35667765432 34566899999999954
No 341
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=40.46 E-value=62 Score=40.69 Aligned_cols=84 Identities=15% Similarity=0.101 Sum_probs=69.9
Q ss_pred cCcccchhhHHHHHHHHHhhhhcccccchhhhhhcccCCCCCccccCCCCCCCCeEEEEecchhHHHHHHHHHhhc-CCe
Q 001840 800 LDNEYISSKIRTVLDILHTQCELNTKCSIVEIHDLAGSNGSSAVHSKSPIEGPIKSIVFSQWTRMLDLVENSLNQH-CIQ 878 (1007)
Q Consensus 800 ~~~~~~SsKl~~l~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvIIFsq~~~~ld~L~~~L~~~-gi~ 878 (1007)
......|.|.+..++++.+.+++|. .+||-..-......+...|+.+ |.+
T Consensus 222 l~GvTGSGKTEvYl~~i~~~L~~Gk-----------------------------qvLvLVPEI~Ltpq~~~rf~~rFg~~ 272 (730)
T COG1198 222 LDGVTGSGKTEVYLEAIAKVLAQGK-----------------------------QVLVLVPEIALTPQLLARFKARFGAK 272 (730)
T ss_pred EeCCCCCcHHHHHHHHHHHHHHcCC-----------------------------EEEEEeccccchHHHHHHHHHHhCCC
Confidence 4455689999999999999999987 8899888887777777777666 788
Q ss_pred EEEecCCCChHHHHHHHHhhccCcccceeeeeccC
Q 001840 879 YRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKA 913 (1007)
Q Consensus 879 ~~~i~Gs~s~~~R~~~I~~F~~~~~~~VlLlStka 913 (1007)
+..++++.++.+|.+.-.+...+ +.+|+|.+-.|
T Consensus 273 v~vlHS~Ls~~er~~~W~~~~~G-~~~vVIGtRSA 306 (730)
T COG1198 273 VAVLHSGLSPGERYRVWRRARRG-EARVVIGTRSA 306 (730)
T ss_pred hhhhcccCChHHHHHHHHHHhcC-CceEEEEechh
Confidence 99999999999999999888865 78888876443
No 342
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=40.23 E-value=1.2e+02 Score=39.45 Aligned_cols=74 Identities=11% Similarity=0.131 Sum_probs=56.0
Q ss_pred eEEEEecchhHHHHHHHHHhh----cCCeEEEecCCCChHHHHHHHHhhccCcccceeeeeccCcccccccccCCEEEE
Q 001840 854 KSIVFSQWTRMLDLVENSLNQ----HCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVIL 928 (1007)
Q Consensus 854 KvIIFsq~~~~ld~L~~~L~~----~gi~~~~i~Gs~s~~~R~~~I~~F~~~~~~~VlLlStkagg~GLNL~~A~~VI~ 928 (1007)
+++|.+..+..+......+.+ .++.+..++|.++..++.+.++.+.++ .+.|++.+.......+.+.....||+
T Consensus 502 qvlvLvPT~~LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g-~~dIVIGTp~ll~~~v~f~~L~llVI 579 (926)
T TIGR00580 502 QVAVLVPTTLLAQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELASG-KIDILIGTHKLLQKDVKFKDLGLLII 579 (926)
T ss_pred eEEEEeCcHHHHHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcC-CceEEEchHHHhhCCCCcccCCEEEe
Confidence 899999999888877766654 377888999999988999999988864 56777777655555566665555544
No 343
>PHA03096 p28-like protein; Provisional
Probab=40.01 E-value=11 Score=41.65 Aligned_cols=34 Identities=21% Similarity=0.478 Sum_probs=27.5
Q ss_pred ccccccCCCCC--------CccccccCcccchhhhhhhccCC
Q 001840 719 AICCVCSDPPE--------DSVVTMCGHVFCYQCASEYITGD 752 (1007)
Q Consensus 719 ~~C~~c~d~~~--------~~v~t~CgH~~c~~ci~~~~~~~ 752 (1007)
.+|.+|++... .-+++.|.|.||..|+..|.+..
T Consensus 179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~~~ 220 (284)
T PHA03096 179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMTES 220 (284)
T ss_pred hhcccchhhhhhhccccccccccccCCcHHHHHHHHHHHHhh
Confidence 68999998643 24788999999999999887643
No 344
>PRK14873 primosome assembly protein PriA; Provisional
Probab=39.78 E-value=1.1e+02 Score=38.33 Aligned_cols=76 Identities=13% Similarity=0.028 Sum_probs=64.1
Q ss_pred chhhHHHHHHHHHhhhhcccccchhhhhhcccCCCCCccccCCCCCCCCeEEEEecchhHHHHHHHHHhhc-C-CeEEEe
Q 001840 805 ISSKIRTVLDILHTQCELNTKCSIVEIHDLAGSNGSSAVHSKSPIEGPIKSIVFSQWTRMLDLVENSLNQH-C-IQYRRL 882 (1007)
Q Consensus 805 ~SsKl~~l~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvIIFsq~~~~ld~L~~~L~~~-g-i~~~~i 882 (1007)
.|.|-+..++++......|. .+||...-......+.+.|+.. | ..++.+
T Consensus 170 GSGKTevyl~~i~~~l~~Gk-----------------------------~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~l 220 (665)
T PRK14873 170 GEDWARRLAAAAAATLRAGR-----------------------------GALVVVPDQRDVDRLEAALRALLGAGDVAVL 220 (665)
T ss_pred CCcHHHHHHHHHHHHHHcCC-----------------------------eEEEEecchhhHHHHHHHHHHHcCCCcEEEE
Confidence 47899999999999998877 8999988888888888888766 4 678999
Q ss_pred cCCCChHHHHHHHHhhccCcccceeeee
Q 001840 883 DGTMSLPARDRAVKDFNTDREITVMLMS 910 (1007)
Q Consensus 883 ~Gs~s~~~R~~~I~~F~~~~~~~VlLlS 910 (1007)
++.++..+|.+.......+ +.+|+|.+
T Consensus 221 hS~l~~~~R~~~w~~~~~G-~~~IViGt 247 (665)
T PRK14873 221 SAGLGPADRYRRWLAVLRG-QARVVVGT 247 (665)
T ss_pred CCCCCHHHHHHHHHHHhCC-CCcEEEEc
Confidence 9999999999988888755 67777765
No 345
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=39.72 E-value=50 Score=37.18 Aligned_cols=60 Identities=12% Similarity=-0.022 Sum_probs=45.2
Q ss_pred ccchhhHHHHHHHHHhhhhcccccchhhhhhcccCCCCCccccCCCCCCCCeEEEEecchhHHHHHHHHHhhc--CCeEE
Q 001840 803 EYISSKIRTVLDILHTQCELNTKCSIVEIHDLAGSNGSSAVHSKSPIEGPIKSIVFSQWTRMLDLVENSLNQH--CIQYR 880 (1007)
Q Consensus 803 ~~~SsKl~~l~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvIIFsq~~~~ld~L~~~L~~~--gi~~~ 880 (1007)
...+.|-+.+.+-+...+++|. +|.|-|..+++.--|...|++. +....
T Consensus 124 V~GaGKTEMif~~i~~al~~G~-----------------------------~vciASPRvDVclEl~~Rlk~aF~~~~I~ 174 (441)
T COG4098 124 VTGAGKTEMIFQGIEQALNQGG-----------------------------RVCIASPRVDVCLELYPRLKQAFSNCDID 174 (441)
T ss_pred ecCCCchhhhHHHHHHHHhcCC-----------------------------eEEEecCcccchHHHHHHHHHhhccCCee
Confidence 3456777777777777777665 9999999999988888888876 56667
Q ss_pred EecCCCChHHH
Q 001840 881 RLDGTMSLPAR 891 (1007)
Q Consensus 881 ~i~Gs~s~~~R 891 (1007)
.++|.-++.-|
T Consensus 175 ~Lyg~S~~~fr 185 (441)
T COG4098 175 LLYGDSDSYFR 185 (441)
T ss_pred eEecCCchhcc
Confidence 78887665554
No 346
>PHA00673 acetyltransferase domain containing protein
Probab=38.94 E-value=44 Score=33.56 Aligned_cols=45 Identities=13% Similarity=0.059 Sum_probs=36.3
Q ss_pred ceeEEEEccCcccCCcccHHHHHHHhc---ccCcEEEEeccCCCCChh
Q 001840 511 GWFRVVLDEAQTIKNHRTQVARACCSL---RAKRRWCLSGTPIQNSID 555 (1007)
Q Consensus 511 ~w~rVIlDEAH~iKN~~s~~~kal~~L---~a~~r~lLTGTPi~N~l~ 555 (1007)
..+-|.||+.|+=++-.+.+.+.+... ..-++|-+||||-.|.++
T Consensus 87 ~Ie~l~V~~~~RGqGIG~~Ll~~A~~~Ar~~Gc~~lyis~~p~~~tv~ 134 (154)
T PHA00673 87 TTESIFVAAAHRPGGAGMALLRATEALARDLGATGLYVSGPTEGRLVQ 134 (154)
T ss_pred EEEEEEEChhccCCCHHHHHHHHHHHHHHHCCCCEEEEecCCCccchH
Confidence 356799999999888887777766555 456899999999999876
No 347
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=38.12 E-value=18 Score=40.31 Aligned_cols=46 Identities=30% Similarity=0.732 Sum_probs=36.4
Q ss_pred cccccccCCCC------CCccccccCcccchhhhhhhccCCCCCCCCcchhhcc
Q 001840 718 SAICCVCSDPP------EDSVVTMCGHVFCYQCASEYITGDDNMCPAPRCKEQL 765 (1007)
Q Consensus 718 ~~~C~~c~d~~------~~~v~t~CgH~~c~~ci~~~~~~~~~~cp~~~cr~~l 765 (1007)
.+.|-+|.+.. ..|-+-.|||.+|..|...++......| |.||...
T Consensus 3 ~~~c~~c~~~~s~~~~~~~p~~l~c~h~~c~~c~~~l~~~~~i~c--pfcR~~~ 54 (296)
T KOG4185|consen 3 FPECEICNEDYSSEDGDHIPRVLKCGHTICQNCASKLLGNSRILC--PFCRETT 54 (296)
T ss_pred CCceeecCccccccCcccCCcccccCceehHhHHHHHhcCceeec--cCCCCcc
Confidence 35788887653 3366667999999999999998888888 5788874
No 348
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=37.50 E-value=1.6e+02 Score=36.58 Aligned_cols=22 Identities=23% Similarity=0.351 Sum_probs=18.2
Q ss_pred eeecCCCCchHHHHHHHHHhhc
Q 001840 300 ILADDQGLGKTISIIALIQMQR 321 (1007)
Q Consensus 300 ILADdmGLGKTiqaIali~~~~ 321 (1007)
|+.-.-|.|||-.+.+++....
T Consensus 42 Lf~Gp~GvGKTtlAr~lAk~Ln 63 (618)
T PRK14951 42 LFTGTRGVGKTTVSRILAKSLN 63 (618)
T ss_pred EEECCCCCCHHHHHHHHHHHhc
Confidence 7889999999999888875543
No 349
>PRK14974 cell division protein FtsY; Provisional
Probab=37.07 E-value=1.2e+02 Score=34.72 Aligned_cols=43 Identities=7% Similarity=0.090 Sum_probs=25.1
Q ss_pred eeEEEEccCcccCCcccHHHHHHHhc----ccC-cEEEEeccCCCCChh
Q 001840 512 WFRVVLDEAQTIKNHRTQVARACCSL----RAK-RRWCLSGTPIQNSID 555 (1007)
Q Consensus 512 w~rVIlDEAH~iKN~~s~~~kal~~L----~a~-~r~lLTGTPi~N~l~ 555 (1007)
.++||||+|+...+..... ..+..+ ... ..+++++|--++.+.
T Consensus 223 ~DvVLIDTaGr~~~~~~lm-~eL~~i~~~~~pd~~iLVl~a~~g~d~~~ 270 (336)
T PRK14974 223 IDVVLIDTAGRMHTDANLM-DELKKIVRVTKPDLVIFVGDALAGNDAVE 270 (336)
T ss_pred CCEEEEECCCccCCcHHHH-HHHHHHHHhhCCceEEEeeccccchhHHH
Confidence 5789999999986544332 222322 333 456778876443333
No 350
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=36.37 E-value=2.9e+02 Score=34.26 Aligned_cols=22 Identities=18% Similarity=0.277 Sum_probs=18.2
Q ss_pred ceeecCCCCchHHHHHHHHHhh
Q 001840 299 GILADDQGLGKTISIIALIQMQ 320 (1007)
Q Consensus 299 GILADdmGLGKTiqaIali~~~ 320 (1007)
-|+.-..|+|||..|.+++...
T Consensus 41 ~Lf~GPpG~GKTtiArilAk~L 62 (624)
T PRK14959 41 YLFSGTRGVGKTTIARIFAKAL 62 (624)
T ss_pred EEEECCCCCCHHHHHHHHHHhc
Confidence 4678999999999998888554
No 351
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=36.28 E-value=26 Score=43.50 Aligned_cols=49 Identities=29% Similarity=0.708 Sum_probs=36.4
Q ss_pred HHHhhcccccc-----cccccCCCCCCc-cccccCcccchhhhhhhccCCCCCCCCcchhh
Q 001840 709 DLLSRLETSSA-----ICCVCSDPPEDS-VVTMCGHVFCYQCASEYITGDDNMCPAPRCKE 763 (1007)
Q Consensus 709 ~ll~~le~~~~-----~C~~c~d~~~~~-v~t~CgH~~c~~ci~~~~~~~~~~cp~~~cr~ 763 (1007)
..++.+..+.. .|..|.-+++.| |--.|||.|-..|+. ..+..|| .|+.
T Consensus 826 ~~l~~lr~sa~i~q~skCs~C~~~LdlP~VhF~CgHsyHqhC~e----~~~~~CP--~C~~ 880 (933)
T KOG2114|consen 826 QELETLRTSAQIFQVSKCSACEGTLDLPFVHFLCGHSYHQHCLE----DKEDKCP--KCLP 880 (933)
T ss_pred HHHHHhhcccceeeeeeecccCCccccceeeeecccHHHHHhhc----cCcccCC--ccch
Confidence 34555555555 799999999887 566999999999988 3445777 5655
No 352
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=35.63 E-value=1.7e+02 Score=33.89 Aligned_cols=20 Identities=20% Similarity=0.554 Sum_probs=16.6
Q ss_pred eeecCCCCchHHHHHHHHHh
Q 001840 300 ILADDQGLGKTISIIALIQM 319 (1007)
Q Consensus 300 ILADdmGLGKTiqaIali~~ 319 (1007)
+|.=++|.|||..++.++..
T Consensus 86 LI~G~pG~GKStLllq~a~~ 105 (372)
T cd01121 86 LIGGDPGIGKSTLLLQVAAR 105 (372)
T ss_pred EEEeCCCCCHHHHHHHHHHH
Confidence 67889999999988877744
No 353
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=35.59 E-value=2e+02 Score=33.17 Aligned_cols=25 Identities=16% Similarity=0.296 Sum_probs=20.2
Q ss_pred CceeecCCCCchHHHHHHHHHhhcc
Q 001840 298 GGILADDQGLGKTISIIALIQMQRS 322 (1007)
Q Consensus 298 GGILADdmGLGKTiqaIali~~~~~ 322 (1007)
+=|+.=.-|+|||..|.+++....+
T Consensus 43 A~Lf~Gp~G~GK~~lA~~~A~~Llc 67 (365)
T PRK07471 43 AWLIGGPQGIGKATLAYRMARFLLA 67 (365)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhC
Confidence 3467889999999999999876544
No 354
>CHL00095 clpC Clp protease ATP binding subunit
Probab=35.54 E-value=87 Score=40.40 Aligned_cols=22 Identities=36% Similarity=0.424 Sum_probs=18.8
Q ss_pred CceeecCCCCchHHHHHHHHHh
Q 001840 298 GGILADDQGLGKTISIIALIQM 319 (1007)
Q Consensus 298 GGILADdmGLGKTiqaIali~~ 319 (1007)
+-||--+.|.|||..+-+++..
T Consensus 202 n~lL~G~pGvGKTal~~~la~~ 223 (821)
T CHL00095 202 NPILIGEPGVGKTAIAEGLAQR 223 (821)
T ss_pred CeEEECCCCCCHHHHHHHHHHH
Confidence 4699999999999988888754
No 355
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=34.74 E-value=8.2 Score=46.97 Aligned_cols=47 Identities=23% Similarity=0.557 Sum_probs=0.0
Q ss_pred ccccCCCCCCcccc---ccCcccchhhhhhhccCCCCCCCCcchhhcccccce
Q 001840 721 CCVCSDPPEDSVVT---MCGHVFCYQCASEYITGDDNMCPAPRCKEQLGADVV 770 (1007)
Q Consensus 721 C~~c~d~~~~~v~t---~CgH~~c~~ci~~~~~~~~~~cp~~~cr~~l~~~~~ 770 (1007)
|++|+....+-.+. .|+|+||..|+..| ..-...|| .|+.+...-.+
T Consensus 126 CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sW-sR~aqTCP--iDR~EF~~v~V 175 (1134)
T KOG0825|consen 126 CPNCLKSCNDQLEESEKHTAHYFCEECVGSW-SRCAQTCP--VDRGEFGEVKV 175 (1134)
T ss_pred hhHHHHHHHHHhhccccccccccHHHHhhhh-hhhcccCc--hhhhhhheeee
No 356
>PHA03372 DNA packaging terminase subunit 1; Provisional
Probab=34.53 E-value=99 Score=37.79 Aligned_cols=20 Identities=25% Similarity=0.414 Sum_probs=16.5
Q ss_pred ccccceeEEEEccCcccCCc
Q 001840 507 LAKVGWFRVVLDEAQTIKNH 526 (1007)
Q Consensus 507 L~~~~w~rVIlDEAH~iKN~ 526 (1007)
+....|++++|||||.||-.
T Consensus 295 iRGQ~fnll~VDEA~FI~~~ 314 (668)
T PHA03372 295 IRGQNFHLLLVDEAHFIKKD 314 (668)
T ss_pred ccCCCCCEEEEehhhccCHH
Confidence 45667999999999999854
No 357
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=33.95 E-value=2.1e+02 Score=33.90 Aligned_cols=54 Identities=19% Similarity=0.210 Sum_probs=33.7
Q ss_pred eeEEEEccCcccCCcccHHHHHHHhc-c-----cCcEEEEeccCCCCChhHHHHHHHHHhc
Q 001840 512 WFRVVLDEAQTIKNHRTQVARACCSL-R-----AKRRWCLSGTPIQNSIDDLYSYFRFLKY 566 (1007)
Q Consensus 512 w~rVIlDEAH~iKN~~s~~~kal~~L-~-----a~~r~lLTGTPi~N~l~DL~sll~fL~~ 566 (1007)
+++||||.+-+....... ...+..+ . .+..++|++|+-.+.+.+++..+..+.+
T Consensus 300 ~DlVlIDt~G~~~~d~~~-~~~L~~ll~~~~~~~~~~LVl~a~~~~~~l~~~~~~f~~~~~ 359 (424)
T PRK05703 300 CDVILIDTAGRSQRDKRL-IEELKALIEFSGEPIDVYLVLSATTKYEDLKDIYKHFSRLPL 359 (424)
T ss_pred CCEEEEeCCCCCCCCHHH-HHHHHHHHhccCCCCeEEEEEECCCCHHHHHHHHHHhCCCCC
Confidence 688999998764332222 2222222 2 2457889999877777777777665554
No 358
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=33.04 E-value=1.4e+02 Score=35.49 Aligned_cols=21 Identities=29% Similarity=0.248 Sum_probs=16.5
Q ss_pred ceeecCCCCchHHHHHHHHHh
Q 001840 299 GILADDQGLGKTISIIALIQM 319 (1007)
Q Consensus 299 GILADdmGLGKTiqaIali~~ 319 (1007)
-+|.-+.|+|||--+-|+...
T Consensus 144 l~L~G~~G~GKTHLl~Ai~~~ 164 (445)
T PRK12422 144 IYLFGPEGSGKTHLMQAAVHA 164 (445)
T ss_pred EEEEcCCCCCHHHHHHHHHHH
Confidence 477789999999877776644
No 359
>PRK10689 transcription-repair coupling factor; Provisional
Probab=32.96 E-value=1.9e+02 Score=38.77 Aligned_cols=73 Identities=10% Similarity=0.075 Sum_probs=53.2
Q ss_pred eEEEEecchhHHHHHHHHHhhc----CCeEEEecCCCChHHHHHHHHhhccCcccceeeeeccCcccccccccCCEEE
Q 001840 854 KSIVFSQWTRMLDLVENSLNQH----CIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVI 927 (1007)
Q Consensus 854 KvIIFsq~~~~ld~L~~~L~~~----gi~~~~i~Gs~s~~~R~~~I~~F~~~~~~~VlLlStkagg~GLNL~~A~~VI 927 (1007)
+++|.+.-+..+.-+...+.+. ++.+..+.|..+.+++.++++...++ .+.|++.+.......+++.....+|
T Consensus 651 qvlvLvPT~eLA~Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g-~~dIVVgTp~lL~~~v~~~~L~lLV 727 (1147)
T PRK10689 651 QVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEG-KIDILIGTHKLLQSDVKWKDLGLLI 727 (1147)
T ss_pred eEEEEeCcHHHHHHHHHHHHHhhccCCceEEEEECCCCHHHHHHHHHHHHhC-CCCEEEECHHHHhCCCCHhhCCEEE
Confidence 8999999998877776666543 57778899999999999988888754 5778887765555455554444443
No 360
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=32.30 E-value=1.7e+02 Score=35.96 Aligned_cols=21 Identities=19% Similarity=0.287 Sum_probs=17.3
Q ss_pred ceeecCCCCchHHHHHHHHHh
Q 001840 299 GILADDQGLGKTISIIALIQM 319 (1007)
Q Consensus 299 GILADdmGLGKTiqaIali~~ 319 (1007)
-|+.-.-|.|||..|-.++..
T Consensus 41 yLf~Gp~GtGKTt~Ak~lAka 61 (559)
T PRK05563 41 YLFSGPRGTGKTSAAKIFAKA 61 (559)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 366999999999988887744
No 361
>PTZ00062 glutaredoxin; Provisional
Probab=31.67 E-value=2e+02 Score=30.41 Aligned_cols=56 Identities=18% Similarity=0.281 Sum_probs=39.6
Q ss_pred eEEEEec------chhHHHHHHHHHhhcCCeEEEecCCCChHHHHHHHHhhccCcccceeeee
Q 001840 854 KSIVFSQ------WTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMS 910 (1007)
Q Consensus 854 KvIIFsq------~~~~ld~L~~~L~~~gi~~~~i~Gs~s~~~R~~~I~~F~~~~~~~VlLlS 910 (1007)
+|+||+. +-.....+...|+..|+.|..++=....+.|+. +.++..-+.+..+.+.
T Consensus 114 ~Vvvf~Kg~~~~p~C~~C~~~k~~L~~~~i~y~~~DI~~d~~~~~~-l~~~sg~~TvPqVfI~ 175 (204)
T PTZ00062 114 KILLFMKGSKTFPFCRFSNAVVNMLNSSGVKYETYNIFEDPDLREE-LKVYSNWPTYPQLYVN 175 (204)
T ss_pred CEEEEEccCCCCCCChhHHHHHHHHHHcCCCEEEEEcCCCHHHHHH-HHHHhCCCCCCeEEEC
Confidence 9999988 556778889999999999999887766666655 4455543343333334
No 362
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=31.57 E-value=1.4e+02 Score=29.69 Aligned_cols=47 Identities=11% Similarity=0.154 Sum_probs=37.3
Q ss_pred eEEEEecc-------hhHHHHHHHHHhhcCCeEEEecCCCChHHHHHHHHhhcc
Q 001840 854 KSIVFSQW-------TRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNT 900 (1007)
Q Consensus 854 KvIIFsq~-------~~~ld~L~~~L~~~gi~~~~i~Gs~s~~~R~~~I~~F~~ 900 (1007)
||+||+.. -..-..+...|+..+|.|..++=++..+.++++.+....
T Consensus 1 ~VvlYttsl~giR~t~~~C~~ak~iL~~~~V~~~e~DVs~~~~~~~EL~~~~g~ 54 (147)
T cd03031 1 RVVLYTTSLRGVRKTFEDCNNVRAILESFRVKFDERDVSMDSGFREELRELLGA 54 (147)
T ss_pred CEEEEEcCCcCCCCcChhHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHhCC
Confidence 46788776 355678889999999999999999988888887766543
No 363
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=30.66 E-value=2.4e+02 Score=37.40 Aligned_cols=50 Identities=30% Similarity=0.286 Sum_probs=33.9
Q ss_pred eEEEEccCcccCCcccHHHHHHHhc-ccCcEEEEeccCCCCChhHHHHHHHHH
Q 001840 513 FRVVLDEAQTIKNHRTQVARACCSL-RAKRRWCLSGTPIQNSIDDLYSYFRFL 564 (1007)
Q Consensus 513 ~rVIlDEAH~iKN~~s~~~kal~~L-~a~~r~lLTGTPi~N~l~DL~sll~fL 564 (1007)
++||||||..+... ...+.+..+ ++..+++|.|=|-|-..-+--..|+.|
T Consensus 470 ~vlVIDEAsMv~~~--~m~~Ll~~~~~~garvVLVGD~~QL~~V~aG~~f~~l 520 (1102)
T PRK13826 470 TVFVLDEAGMVASR--QMALFVEAVTRAGAKLVLVGDPEQLQPIEAGAAFRAI 520 (1102)
T ss_pred cEEEEECcccCCHH--HHHHHHHHHHhcCCEEEEECCHHHcCCCCCCcHHHHH
Confidence 47999999998543 444555555 467899999998876654433334433
No 364
>cd05566 PTS_IIB_galactitol PTS_IIB_galactitol: subunit IIB of enzyme II (EII) of the galactitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is a galactitol-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain that are expressed on three distinct polypeptide chains, in contrast to other PTS sugar transporters. The three genes encoding these subunits (gatA, gatB, and gatC) comprise the gatCBA operon. Galactitol PTS permease takes up exogenous galactitol, releasing the phosphate ester into the cytoplasm in preparation for oxidation and further metabolism via a modified glycolytic pathway called the tagatose-6-phosphate glycolytic pathway. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include galactitol, chitobiose/lichenan, ascorbate, lactose, mannitol, fructose, and
Probab=30.52 E-value=58 Score=28.96 Aligned_cols=55 Identities=16% Similarity=0.252 Sum_probs=31.2
Q ss_pred ceEEEcChhhH--HHHHHHHHHHcCCCCCeEEEEEeCCCCCCCccccCCCcEEEechhh
Q 001840 386 GTLVVCPASVL--RQWARELEDKVPDKAALSVLIYHGGSRTKDPVELAKYDVVLTTYSI 442 (1007)
Q Consensus 386 ~tLIV~P~sLl--~QW~~Ei~k~~~~~~~l~vlv~~g~~r~~~~~~l~~~dVVItSy~~ 442 (1007)
++|||||..+- ..-...++++++.. .+.+.+-+.+...... ...++|++|||-..
T Consensus 2 ~ilivC~~G~~tS~~l~~~i~~~~~~~-~i~~~v~~~~~~~~~~-~~~~~Dliist~~~ 58 (89)
T cd05566 2 KILVACGTGVATSTVVASKVKELLKEN-GIDVKVEQCKIAEVPS-LLDDADLIVSTTKV 58 (89)
T ss_pred EEEEECCCCccHHHHHHHHHHHHHHHC-CCceEEEEecHHHhhc-ccCCCcEEEEcCCc
Confidence 47999998652 24566677766422 3333222222211111 35689999999865
No 365
>PRK06893 DNA replication initiation factor; Validated
Probab=30.45 E-value=2.3e+02 Score=30.18 Aligned_cols=19 Identities=16% Similarity=0.165 Sum_probs=15.4
Q ss_pred eeecCCCCchHHHHHHHHH
Q 001840 300 ILADDQGLGKTISIIALIQ 318 (1007)
Q Consensus 300 ILADdmGLGKTiqaIali~ 318 (1007)
+|.-..|.|||--+-|+..
T Consensus 43 ~l~G~~G~GKThL~~ai~~ 61 (229)
T PRK06893 43 YIWGGKSSGKSHLLKAVSN 61 (229)
T ss_pred EEECCCCCCHHHHHHHHHH
Confidence 7889999999987766663
No 366
>PRK11054 helD DNA helicase IV; Provisional
Probab=30.42 E-value=78 Score=39.83 Aligned_cols=39 Identities=21% Similarity=0.062 Sum_probs=28.4
Q ss_pred ccCchHHHHHHHHHHHhhhcCCCccCceeecCCCCchHHHHHHHHHhh
Q 001840 273 VNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQ 320 (1007)
Q Consensus 273 ~~LrpyQ~~~v~wml~~e~~~~~~~GGILADdmGLGKTiqaIali~~~ 320 (1007)
.+|-+-|+.+|..-. . ..++---.|.|||-++++-+.++
T Consensus 195 ~~L~~~Q~~av~~~~----~-----~~lV~agaGSGKT~vl~~r~ayL 233 (684)
T PRK11054 195 SPLNPSQARAVVNGE----D-----SLLVLAGAGSGKTSVLVARAGWL 233 (684)
T ss_pred CCCCHHHHHHHhCCC----C-----CeEEEEeCCCCHHHHHHHHHHHH
Confidence 479999999997431 1 12444458999999999888664
No 367
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=30.06 E-value=2.4e+02 Score=22.67 Aligned_cols=45 Identities=16% Similarity=0.166 Sum_probs=33.0
Q ss_pred EEEEecch-hHHHHHHHHHhhcCCeEEEecCCCChHHHHHHHHhhc
Q 001840 855 SIVFSQWT-RMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFN 899 (1007)
Q Consensus 855 vIIFsq~~-~~ld~L~~~L~~~gi~~~~i~Gs~s~~~R~~~I~~F~ 899 (1007)
|+||+... .....+.+.|++.|++|..++=+...+.++++.+...
T Consensus 1 V~vy~~~~C~~C~~~~~~L~~~~i~y~~~dv~~~~~~~~~l~~~~g 46 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFLDEKGIPYEEVDVDEDEEAREELKELSG 46 (60)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTBEEEEEEGGGSHHHHHHHHHHHS
T ss_pred cEEEEcCCCcCHHHHHHHHHHcCCeeeEcccccchhHHHHHHHHcC
Confidence 35555433 5567788899999999999988887777776666654
No 368
>PRK05642 DNA replication initiation factor; Validated
Probab=29.84 E-value=2.3e+02 Score=30.41 Aligned_cols=36 Identities=22% Similarity=0.245 Sum_probs=22.6
Q ss_pred eEEEEccCcccCCccc---HHHHHHHhc-ccCcEEEEecc
Q 001840 513 FRVVLDEAQTIKNHRT---QVARACCSL-RAKRRWCLSGT 548 (1007)
Q Consensus 513 ~rVIlDEAH~iKN~~s---~~~kal~~L-~a~~r~lLTGT 548 (1007)
+++|||+.|.+.+... ..+..+..+ ....++++|+|
T Consensus 99 d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~ 138 (234)
T PRK05642 99 ELVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAAS 138 (234)
T ss_pred CEEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCC
Confidence 5799999999865432 223333233 24567888887
No 369
>cd05568 PTS_IIB_bgl_like PTS_IIB_bgl_like: the PTS (phosphotransferase system) IIB domain of a family of sensory systems composed of a membrane-bound sugar-sensor (similar to BglF) and a transcription antiterminator (similar to BglG) which regulate expression of genes involved in sugar utilization. The domain architecture of the IIB-containing protein includes a region N-terminal to the IIB domain which is homologous to the BglG transcription antiterminator with an RNA-binding domain followed by two homologous domains, PRD1 and PRD2 (PTS Regulation Domains). C-terminal to the IIB domain is a domain similar to the PTS IIA domain. In this system, the BglG-like region and the IIB and IIA-like domains are all expressed together as a single multidomain protein. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include this sensory system with similarity to the bacterial
Probab=29.60 E-value=80 Score=27.51 Aligned_cols=53 Identities=25% Similarity=0.517 Sum_probs=32.4
Q ss_pred ceEEEcChhhH--HHHHHHHHHHcCCCCCeEEEEEeCCCCCCCccccCCCcEEEechhh
Q 001840 386 GTLVVCPASVL--RQWARELEDKVPDKAALSVLIYHGGSRTKDPVELAKYDVVLTTYSI 442 (1007)
Q Consensus 386 ~tLIV~P~sLl--~QW~~Ei~k~~~~~~~l~vlv~~g~~r~~~~~~l~~~dVVItSy~~ 442 (1007)
.+||||+...- .--+..+++.++. ..++........ ......++|+||||...
T Consensus 2 kilivC~~G~~~s~~l~~~l~~~~~~---~~~v~~~~~~~~-~~~~~~~~DlIitT~~l 56 (85)
T cd05568 2 KALVVCPSGIGTSRLLKSKLKKLFPE---IEIIDVISLREL-EEVDLDDYDLIISTVPL 56 (85)
T ss_pred eEEEECCCCHHHHHHHHHHHHHHCCC---ceEEEEEeHHHH-hhCcccCCCEEEEcccc
Confidence 37999998753 4477888888863 333222221111 11135789999999864
No 370
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=28.26 E-value=3.8e+02 Score=33.08 Aligned_cols=21 Identities=24% Similarity=0.406 Sum_probs=17.7
Q ss_pred eeecCCCCchHHHHHHHHHhh
Q 001840 300 ILADDQGLGKTISIIALIQMQ 320 (1007)
Q Consensus 300 ILADdmGLGKTiqaIali~~~ 320 (1007)
|+.=.-|.|||-.+.+++...
T Consensus 42 Lf~Gp~G~GKtt~A~~lak~l 62 (576)
T PRK14965 42 LFTGARGVGKTSTARILAKAL 62 (576)
T ss_pred EEECCCCCCHHHHHHHHHHhh
Confidence 678899999999998887553
No 371
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=27.52 E-value=41 Score=39.42 Aligned_cols=45 Identities=20% Similarity=0.224 Sum_probs=0.0
Q ss_pred ceeEEEEccCcccCCcccHHHHHHHhc--------ccCcEEEEeccCCCCChhHHHH
Q 001840 511 GWFRVVLDEAQTIKNHRTQVARACCSL--------RAKRRWCLSGTPIQNSIDDLYS 559 (1007)
Q Consensus 511 ~w~rVIlDEAH~iKN~~s~~~kal~~L--------~a~~r~lLTGTPi~N~l~DL~s 559 (1007)
.|.++|+|||| .+|..+..+..| .--+.+++|+|-....+..+|+
T Consensus 159 ~y~viiLDeah----ERtlATDiLmGllk~v~~~rpdLk~vvmSatl~a~Kfq~yf~ 211 (699)
T KOG0925|consen 159 RYGVIILDEAH----ERTLATDILMGLLKEVVRNRPDLKLVVMSATLDAEKFQRYFG 211 (699)
T ss_pred cccEEEechhh----hhhHHHHHHHHHHHHHHhhCCCceEEEeecccchHHHHHHhC
No 372
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=27.26 E-value=2.5e+02 Score=23.72 Aligned_cols=58 Identities=9% Similarity=0.130 Sum_probs=38.4
Q ss_pred eEEEEecc-hhHHHHHHHHHhhcCCeEEEecCCCChHHHHHHHHhhccCcccceeeeecc
Q 001840 854 KSIVFSQW-TRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLK 912 (1007)
Q Consensus 854 KvIIFsq~-~~~ld~L~~~L~~~gi~~~~i~Gs~s~~~R~~~I~~F~~~~~~~VlLlStk 912 (1007)
+++||+.. -.....+..+|.+.|++|..++=......+.++.+. .....+.++++.-+
T Consensus 2 ~v~ly~~~~C~~C~ka~~~L~~~gi~~~~~di~~~~~~~~el~~~-~g~~~vP~v~i~~~ 60 (73)
T cd03027 2 RVTIYSRLGCEDCTAVRLFLREKGLPYVEINIDIFPERKAELEER-TGSSVVPQIFFNEK 60 (73)
T ss_pred EEEEEecCCChhHHHHHHHHHHCCCceEEEECCCCHHHHHHHHHH-hCCCCcCEEEECCE
Confidence 67777755 466788888999999999998877665555554443 33334445554533
No 373
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=26.47 E-value=2.7e+02 Score=31.52 Aligned_cols=49 Identities=18% Similarity=0.153 Sum_probs=34.9
Q ss_pred cCchHHHHHHHHHHHhhhcCCCccCceeecCCCCchHHHHHHHHHhhcc
Q 001840 274 NLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRS 322 (1007)
Q Consensus 274 ~LrpyQ~~~v~wml~~e~~~~~~~GGILADdmGLGKTiqaIali~~~~~ 322 (1007)
.++|+|......+.+......-..+=++.-.-|+||+..|.+++....+
T Consensus 4 ~~yPW~~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC 52 (319)
T PRK08769 4 AFSPWQQRAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALALAEHVLA 52 (319)
T ss_pred cccccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHhC
Confidence 5899999887777654333211234467899999999999998866544
No 374
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=26.27 E-value=2.5e+02 Score=36.45 Aligned_cols=37 Identities=24% Similarity=0.278 Sum_probs=23.7
Q ss_pred HHHHHHHhhhcCCCccCceeecCCCCchHHHHHHHHHh
Q 001840 282 ALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQM 319 (1007)
Q Consensus 282 ~v~wml~~e~~~~~~~GGILADdmGLGKTiqaIali~~ 319 (1007)
-+.+|++....+ ...+-||-=+.|.|||..+=+++..
T Consensus 195 ei~~~i~~l~r~-~~~n~lLvG~pGvGKTal~~~La~~ 231 (852)
T TIGR03345 195 EIRQMIDILLRR-RQNNPILTGEAGVGKTAVVEGLALR 231 (852)
T ss_pred HHHHHHHHHhcC-CcCceeEECCCCCCHHHHHHHHHHH
Confidence 356665421111 1234699999999999988777644
No 375
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=26.21 E-value=55 Score=40.77 Aligned_cols=61 Identities=23% Similarity=0.347 Sum_probs=46.5
Q ss_pred hhccC-cccceeeeeccCcccccccccCCEEE--------Eec----------CCCCCChhHHHhHhhhccCCcccEEEE
Q 001840 897 DFNTD-REITVMLMSLKAGNLGLNMVAASHVI--------LLD----------LWWNPTTEDQAVDRAHRIGQTRPVTVT 957 (1007)
Q Consensus 897 ~F~~~-~~~~VlLlStkagg~GLNL~~A~~VI--------~~D----------p~WNp~~e~QaigRi~RiGQ~k~V~Vy 957 (1007)
-|..- .+.+..+++|.++-+.|.+....+|| +|| -|-+.+.-.||.||++|+|-- |-|
T Consensus 622 VF~~~p~g~RLcVVaTNVAETSLTIPgIkYVVD~Gr~K~R~Yd~~TGV~~FeV~wiSkASadQRAGRAGRtgpG---HcY 698 (1172)
T KOG0926|consen 622 VFDEVPKGERLCVVATNVAETSLTIPGIKYVVDCGRVKERLYDSKTGVSSFEVDWISKASADQRAGRAGRTGPG---HCY 698 (1172)
T ss_pred hccCCCCCceEEEEeccchhcccccCCeeEEEeccchhhhccccccCceeEEEEeeeccccchhccccCCCCCC---cee
Confidence 46543 36788899999999999999999987 233 345677788999999999855 456
Q ss_pred EEE
Q 001840 958 RLT 960 (1007)
Q Consensus 958 rLi 960 (1007)
||+
T Consensus 699 RLY 701 (1172)
T KOG0926|consen 699 RLY 701 (1172)
T ss_pred ehh
Confidence 665
No 376
>cd05563 PTS_IIB_ascorbate PTS_IIB_ascorbate: subunit IIB of enzyme II (EII) of the L-ascorbate-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is an L-ascorbate-specific permease with two cytoplasmic subunits (IIA and IIB) and a transmembrane channel IIC subunit. Subunits IIA, IIB, and IIC are encoded by the sgaA, sgaB, and sgaT genes of the E. coli sgaTBA operon. In some bacteria, the IIB (SgaB) domain is fused C-terminal to the IIA (SgaT) domain. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include ascorbate, chitobiose/lichenan, lactose, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=26.07 E-value=1.3e+02 Score=26.39 Aligned_cols=52 Identities=13% Similarity=0.256 Sum_probs=28.3
Q ss_pred eEEEcChhhH-HH-HHHHHHHHcCCCCCeEEEEEeCCCCCCCccccCCCcEEEechhh
Q 001840 387 TLVVCPASVL-RQ-WARELEDKVPDKAALSVLIYHGGSRTKDPVELAKYDVVLTTYSI 442 (1007)
Q Consensus 387 tLIV~P~sLl-~Q-W~~Ei~k~~~~~~~l~vlv~~g~~r~~~~~~l~~~dVVItSy~~ 442 (1007)
+|||||...- .+ -...++++++.. .....+-...-.. ....++|++|||-..
T Consensus 2 ilvvC~~G~~tS~ll~~kl~~~f~~~-~i~~~~~~~~~~~---~~~~~~DlIisT~~l 55 (86)
T cd05563 2 ILAVCGSGLGSSLMLKMNVEKVLKEL-GIEAEVEHTDLGS---AKASSADIIVTSKDL 55 (86)
T ss_pred EEEECCCCccHHHHHHHHHHHHHHHC-CCcEEEEEecccc---cCCCCCCEEEEchhh
Confidence 7999998653 22 344666666422 2222222211111 125689999999863
No 377
>PRK13342 recombination factor protein RarA; Reviewed
Probab=25.97 E-value=1.8e+02 Score=34.10 Aligned_cols=20 Identities=30% Similarity=0.225 Sum_probs=16.4
Q ss_pred CceeecCCCCchHHHHHHHH
Q 001840 298 GGILADDQGLGKTISIIALI 317 (1007)
Q Consensus 298 GGILADdmGLGKTiqaIali 317 (1007)
.-||.=..|+|||..+-++.
T Consensus 38 ~ilL~GppGtGKTtLA~~ia 57 (413)
T PRK13342 38 SMILWGPPGTGKTTLARIIA 57 (413)
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 45888999999998777665
No 378
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=25.95 E-value=6.7e+02 Score=31.24 Aligned_cols=22 Identities=18% Similarity=0.283 Sum_probs=17.3
Q ss_pred ceeecCCCCchHHHHHHHHHhh
Q 001840 299 GILADDQGLGKTISIIALIQMQ 320 (1007)
Q Consensus 299 GILADdmGLGKTiqaIali~~~ 320 (1007)
-|+.-+.|.|||-.+.+++...
T Consensus 42 yLf~Gp~G~GKtt~A~~lAk~l 63 (614)
T PRK14971 42 YLFCGPRGVGKTTCARIFAKTI 63 (614)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 4788999999999777666543
No 379
>KOG2979 consensus Protein involved in DNA repair [General function prediction only]
Probab=25.92 E-value=1.5e+02 Score=32.03 Aligned_cols=46 Identities=20% Similarity=0.416 Sum_probs=36.2
Q ss_pred ccccccccCCCCCCc-cccccCcccchhhhhhhccCC-CCCCCCcchh
Q 001840 717 SSAICCVCSDPPEDS-VVTMCGHVFCYQCASEYITGD-DNMCPAPRCK 762 (1007)
Q Consensus 717 ~~~~C~~c~d~~~~~-v~t~CgH~~c~~ci~~~~~~~-~~~cp~~~cr 762 (1007)
-+..|++-..+-..| +.+.|||+|-..-+.+++... .-.||+..|.
T Consensus 175 fs~rdPis~~~I~nPviSkkC~HvydrDsI~~~l~~~~~i~CPv~gC~ 222 (262)
T KOG2979|consen 175 FSNRDPISKKPIVNPVISKKCGHVYDRDSIMQILCDEITIRCPVLGCE 222 (262)
T ss_pred hcccCchhhhhhhchhhhcCcCcchhhhhHHHHhccCceeecccccCC
Confidence 456688776666666 556999999999999998764 4589998997
No 380
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=25.63 E-value=3.9e+02 Score=37.41 Aligned_cols=43 Identities=21% Similarity=0.228 Sum_probs=31.3
Q ss_pred cccCchHHHHHHHHHHHhhhcCCCccCceeecCCCCchHHHHHHHHHh
Q 001840 272 SVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQM 319 (1007)
Q Consensus 272 ~~~LrpyQ~~~v~wml~~e~~~~~~~GGILADdmGLGKTiqaIali~~ 319 (1007)
...|-+-|+.|+..++.... +-.+|---.|.|||.+.-+++..
T Consensus 965 ~~~Lt~~Q~~Av~~il~s~d-----r~~~I~G~AGTGKTT~l~~v~~~ 1007 (1747)
T PRK13709 965 MEGLTSGQRAATRMILESTD-----RFTVVQGYAGVGKTTQFRAVMSA 1007 (1747)
T ss_pred cCCCCHHHHHHHHHHHhCCC-----cEEEEEeCCCCCHHHHHHHHHHH
Confidence 45689999999998884311 22477778899999887666644
No 381
>COG2247 LytB Putative cell wall-binding domain [Cell envelope biogenesis, outer membrane]
Probab=25.50 E-value=1.4e+02 Score=33.34 Aligned_cols=64 Identities=19% Similarity=0.315 Sum_probs=53.1
Q ss_pred CCeEEEEecchhHHHHHHHHHhhcCCeEEEecCCCChHHHHHHHHhhccC-----cccceeeeeccCcccccccc
Q 001840 852 PIKSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTD-----REITVMLMSLKAGNLGLNMV 921 (1007)
Q Consensus 852 ~~KvIIFsq~~~~ld~L~~~L~~~gi~~~~i~Gs~s~~~R~~~I~~F~~~-----~~~~VlLlStkagg~GLNL~ 921 (1007)
+++|||.-.-..+-.-.+..|+..||.+.|+-|+...+.-+++.+.|+++ ..+.|++++ |.++.
T Consensus 76 pd~VLIIGGp~AVs~~yE~~Lks~GitV~RigG~nR~ETa~~v~~~~~~~yp~af~n~kvvvv~------GwDy~ 144 (337)
T COG2247 76 PDLVLIIGGPIAVSPNYENALKSLGITVKRIGGANRYETAEKVAKFFREDYPNAFKNVKVVVVY------GWDYA 144 (337)
T ss_pred CceEEEECCCCcCChhHHHHHHhCCcEEEEecCcchHHHHHHHHHHHHhhchhhhcCeEEEEEe------ccccH
Confidence 45999999999999999999999999999999999888888888888732 346777777 55555
No 382
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=25.46 E-value=44 Score=37.01 Aligned_cols=53 Identities=21% Similarity=0.535 Sum_probs=38.7
Q ss_pred cccccccccCCCCCC----ccccccCcccchhhhhhhccCCCCCCCCcchhhcccccce
Q 001840 716 TSSAICCVCSDPPED----SVVTMCGHVFCYQCASEYITGDDNMCPAPRCKEQLGADVV 770 (1007)
Q Consensus 716 ~~~~~C~~c~d~~~~----~v~t~CgH~~c~~ci~~~~~~~~~~cp~~~cr~~l~~~~~ 770 (1007)
+.+.-|++|.++++- ..--.||--.|..|...+...-..+|| .||.....+.|
T Consensus 12 deed~cplcie~mditdknf~pc~cgy~ic~fc~~~irq~lngrcp--acrr~y~denv 68 (480)
T COG5175 12 DEEDYCPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQNLNGRCP--ACRRKYDDENV 68 (480)
T ss_pred cccccCcccccccccccCCcccCCcccHHHHHHHHHHHhhccCCCh--Hhhhhccccce
Confidence 345569999988753 233478999999999888776677888 58876665544
No 383
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=25.12 E-value=1.8e+02 Score=34.43 Aligned_cols=22 Identities=32% Similarity=0.282 Sum_probs=17.8
Q ss_pred ceeecCCCCchHHHHHHHHHhh
Q 001840 299 GILADDQGLGKTISIIALIQMQ 320 (1007)
Q Consensus 299 GILADdmGLGKTiqaIali~~~ 320 (1007)
.+++-..|.|||-++..|+...
T Consensus 98 I~lvG~~GsGKTTtaakLA~~L 119 (437)
T PRK00771 98 IMLVGLQGSGKTTTAAKLARYF 119 (437)
T ss_pred EEEECCCCCcHHHHHHHHHHHH
Confidence 3677899999999998887554
No 384
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=24.97 E-value=1.1e+02 Score=31.95 Aligned_cols=55 Identities=15% Similarity=0.189 Sum_probs=30.9
Q ss_pred eeEEEEccCcccCCcccH---HHHHHHhc-ccCcEEEEeccCCCCChhHHHHHHHHHhc
Q 001840 512 WFRVVLDEAQTIKNHRTQ---VARACCSL-RAKRRWCLSGTPIQNSIDDLYSYFRFLKY 566 (1007)
Q Consensus 512 w~rVIlDEAH~iKN~~s~---~~kal~~L-~a~~r~lLTGTPi~N~l~DL~sll~fL~~ 566 (1007)
+++|+||-+-+--+.... ..+.+..+ ....-++|++|=-+..+..+......+++
T Consensus 84 ~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~~~~~~~~~~~~~ 142 (196)
T PF00448_consen 84 YDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQEDLEQALAFYEAFGI 142 (196)
T ss_dssp SSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHHHHHHHHHHHSST
T ss_pred CCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChHHHHHHHHHhhcccC
Confidence 678999998765433222 22222223 34567889998766655555555554443
No 385
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=24.86 E-value=45 Score=37.23 Aligned_cols=43 Identities=19% Similarity=0.154 Sum_probs=27.5
Q ss_pred ccccceeEEEEccCccc-CCcccHHH---HHHHhcccC--cEEEEeccC
Q 001840 507 LAKVGWFRVVLDEAQTI-KNHRTQVA---RACCSLRAK--RRWCLSGTP 549 (1007)
Q Consensus 507 L~~~~w~rVIlDEAH~i-KN~~s~~~---kal~~L~a~--~r~lLTGTP 549 (1007)
|..++..++||||.|++ .+...+.. .+++.|... --+++.||+
T Consensus 141 lr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~ 189 (302)
T PF05621_consen 141 LRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTR 189 (302)
T ss_pred HHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccH
Confidence 66778889999999996 33333333 344444333 346677886
No 386
>cd00133 PTS_IIB PTS_IIB: subunit IIB of enzyme II (EII) is the central energy-coupling domain of the phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In the multienzyme PTS complex, EII is a carbohydrate-specific permease consisting of two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include chitobiose/lichenan, ascorbate, lactose, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system. The PTS is found only in bacteria, where it catalyzes the transport and phosphorylation of numerous monosaccharides, disaccharides, polyols, amino sugars, and other sugar derivatives. The four proteins (domains) forming the PTS phosphorylation cascade (EI, HPr, EIIA, and EIIB), can phosphorylate or interact with numerous non-PTS proteins thereby r
Probab=24.47 E-value=1.5e+02 Score=25.24 Aligned_cols=53 Identities=25% Similarity=0.355 Sum_probs=30.3
Q ss_pred eEEEcChhhH--HHHHHHHHHHcCCCCCeEEEEEeCCCCCCCccccCCCcEEEechhh
Q 001840 387 TLVVCPASVL--RQWARELEDKVPDKAALSVLIYHGGSRTKDPVELAKYDVVLTTYSI 442 (1007)
Q Consensus 387 tLIV~P~sLl--~QW~~Ei~k~~~~~~~l~vlv~~g~~r~~~~~~l~~~dVVItSy~~ 442 (1007)
+|+||+...- ..-...+++.++.......+-+.+.... ....++|++|+|...
T Consensus 2 il~vc~~G~~~s~~l~~~l~~~~~~~~~~~~~~~~~~~~~---~~~~~~dliitt~~~ 56 (84)
T cd00133 2 ILVVCGSGIGSSSMLAEKLEKAAKELGIEVKVEAQGLSEV---IDLADADLIISTVPL 56 (84)
T ss_pred EEEECCCcHhHHHHHHHHHHHHHHHCCCeEEEEEcccchh---hhcCCccEEEECCcc
Confidence 6899998743 3344666666653212222222221111 456889999999864
No 387
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=24.16 E-value=53 Score=37.56 Aligned_cols=25 Identities=24% Similarity=1.012 Sum_probs=19.0
Q ss_pred chhhhhhhccCCC----------CCCCCcchhhcc
Q 001840 741 CYQCASEYITGDD----------NMCPAPRCKEQL 765 (1007)
Q Consensus 741 c~~ci~~~~~~~~----------~~cp~~~cr~~l 765 (1007)
|..|+..++.+.+ .+||||.||...
T Consensus 316 C~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~F 350 (358)
T PF10272_consen 316 CLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKF 350 (358)
T ss_pred HHHHHHHHhhhcCCCCChhhhhcCCCCCCCCcccc
Confidence 6778888876543 489999999764
No 388
>COG1702 PhoH Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms]
Probab=24.15 E-value=41 Score=37.98 Aligned_cols=40 Identities=23% Similarity=0.228 Sum_probs=28.6
Q ss_pred eEEEEccCcccCCcccHHHHHHHhcccCcEEEEeccCCCCCh
Q 001840 513 FRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSI 554 (1007)
Q Consensus 513 ~rVIlDEAH~iKN~~s~~~kal~~L~a~~r~lLTGTPi~N~l 554 (1007)
-.||+||||+ .. --+.-..+..|-...+..+||.+.|-.+
T Consensus 245 AfVIlDEaQN-tT-~~QmKMfLTRiGf~skmvItGD~tQiDL 284 (348)
T COG1702 245 AFVILDEAQN-TT-VGQMKMFLTRIGFESKMVITGDITQIDL 284 (348)
T ss_pred eEEEEecccc-cc-hhhhceeeeeecCCceEEEEcCcccccC
Confidence 4699999998 22 2233344556778899999999977654
No 389
>KOG4164 consensus Cyclin ik3-1/CABLES [Cell cycle control, cell division, chromosome partitioning]
Probab=23.97 E-value=1.9e+02 Score=33.17 Aligned_cols=78 Identities=14% Similarity=0.181 Sum_probs=48.3
Q ss_pred CCCCCCCccccCCCCCCCcccccccccccccchhhhhhhHHHHhhcCCCCCCCCCCCccCcCccccCCcccccCcccccc
Q 001840 95 NGQADDSHYLSGNKNVGQLQTVNPRIANVASADYEKISSQQALKRTLPAFPQPHSLNTKSKSSVENMNSSQIRDTFGNAY 174 (1007)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (1007)
..+.-+++..+-..++||++++|+||.-+++-+ -| .+.++.++++.=+.- +..+....+---
T Consensus 168 S~~~~~~r~~~~~~~mgq~~ar~srivlis~rr------------~l-----~~iFs~lpy~kgk~~-~~dlr~ds~R~R 229 (497)
T KOG4164|consen 168 STITHADRFYICTSTMGQPDARNSRIVLISDRR------------SL-----CPIFSVLPYNKGKFR-SKDLRGDSDRQR 229 (497)
T ss_pred CcccccceeeeeccccCCcccccceEEEeccCc------------cc-----cceeeeccccccccc-chhccccccccc
Confidence 345555566666789999999999999888732 11 123456666543332 233344444445
Q ss_pred cCCCCcccCCCCcccc
Q 001840 175 HLAGPSTVNSKGYIRD 190 (1007)
Q Consensus 175 ~~~~~~~~~~~~~~~~ 190 (1007)
|+.+.+.+..+.|.+.
T Consensus 230 hps~~s~s~~~pf~l~ 245 (497)
T KOG4164|consen 230 HPSGLSVSELRPFVLE 245 (497)
T ss_pred CCcccccccccceeec
Confidence 6666777777777655
No 390
>PRK07952 DNA replication protein DnaC; Validated
Probab=23.60 E-value=2.3e+02 Score=30.79 Aligned_cols=43 Identities=21% Similarity=0.047 Sum_probs=28.0
Q ss_pred hHHHHHHHHHHHhhhcCC-CccCceeecCCCCchHHHHHHHHHh
Q 001840 277 KHQKIALAWMLQKETRSL-HCLGGILADDQGLGKTISIIALIQM 319 (1007)
Q Consensus 277 pyQ~~~v~wml~~e~~~~-~~~GGILADdmGLGKTiqaIali~~ 319 (1007)
+.|+.++..+.+--.... ...|-+|.-..|.|||-.+.|++..
T Consensus 79 ~~q~~al~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~aia~~ 122 (244)
T PRK07952 79 EGQMNALSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNE 122 (244)
T ss_pred chHHHHHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHH
Confidence 456667666554222111 1235688999999999999888855
No 391
>PRK10329 glutaredoxin-like protein; Provisional
Probab=23.28 E-value=3.5e+02 Score=23.74 Aligned_cols=55 Identities=5% Similarity=0.125 Sum_probs=37.8
Q ss_pred eEEEEec-chhHHHHHHHHHhhcCCeEEEecCCCChHHHHHHHHhhccCcccceeeee
Q 001840 854 KSIVFSQ-WTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMS 910 (1007)
Q Consensus 854 KvIIFsq-~~~~ld~L~~~L~~~gi~~~~i~Gs~s~~~R~~~I~~F~~~~~~~VlLlS 910 (1007)
|+.||+. +--....+...|.+.||.|..++-....+.++.+... ....+.++++.
T Consensus 2 ~v~lYt~~~Cp~C~~ak~~L~~~gI~~~~idi~~~~~~~~~~~~~--g~~~vPvv~i~ 57 (81)
T PRK10329 2 RITIYTRNDCVQCHATKRAMESRGFDFEMINVDRVPEAAETLRAQ--GFRQLPVVIAG 57 (81)
T ss_pred EEEEEeCCCCHhHHHHHHHHHHCCCceEEEECCCCHHHHHHHHHc--CCCCcCEEEEC
Confidence 7788884 4466778889999999999998887766555554432 22255566643
No 392
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=23.10 E-value=3.7e+02 Score=30.92 Aligned_cols=37 Identities=30% Similarity=0.257 Sum_probs=25.0
Q ss_pred eeEEEEccCcccCCcc---cHHHHHHHhcc-cCcEEEEecc
Q 001840 512 WFRVVLDEAQTIKNHR---TQVARACCSLR-AKRRWCLSGT 548 (1007)
Q Consensus 512 w~rVIlDEAH~iKN~~---s~~~kal~~L~-a~~r~lLTGT 548 (1007)
....|+|||...-+.. -+..+..+.+. ....++.|+|
T Consensus 233 ikvfVlDEAD~Mi~tqG~~D~S~rI~~~lP~~~QllLFSAT 273 (477)
T KOG0332|consen 233 IKVFVLDEADVMIDTQGFQDQSIRIMRSLPRNQQLLLFSAT 273 (477)
T ss_pred ceEEEecchhhhhhcccccccchhhhhhcCCcceEEeeech
Confidence 4468999999876544 23334445554 6678888998
No 393
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=22.99 E-value=3.6e+02 Score=28.60 Aligned_cols=36 Identities=11% Similarity=0.184 Sum_probs=22.8
Q ss_pred eeEEEEccCcccCCccc---HHHHHHHhc-ccCcEEEEec
Q 001840 512 WFRVVLDEAQTIKNHRT---QVARACCSL-RAKRRWCLSG 547 (1007)
Q Consensus 512 w~rVIlDEAH~iKN~~s---~~~kal~~L-~a~~r~lLTG 547 (1007)
.+++|||..|.+.+... .....+..+ ....++++|+
T Consensus 98 ~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts 137 (219)
T PF00308_consen 98 ADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTS 137 (219)
T ss_dssp SSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEE
T ss_pred CCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEe
Confidence 57899999999987642 222222223 3456777776
No 394
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=22.72 E-value=1.1e+02 Score=33.86 Aligned_cols=37 Identities=19% Similarity=0.230 Sum_probs=23.6
Q ss_pred CchHHHHHHHHHHHhhhcCCCccCceeecCCCCchHHHHHHHHHhh
Q 001840 275 LLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQ 320 (1007)
Q Consensus 275 LrpyQ~~~v~wml~~e~~~~~~~GGILADdmGLGKTiqaIali~~~ 320 (1007)
|-+-|..++.+ . ..+ -++---.|.|||.+++.-++..
T Consensus 1 l~~eQ~~~i~~-~---~~~-----~lV~a~AGSGKT~~l~~ri~~l 37 (315)
T PF00580_consen 1 LTDEQRRIIRS-T---EGP-----LLVNAGAGSGKTTTLLERIAYL 37 (315)
T ss_dssp S-HHHHHHHHS-----SSE-----EEEEE-TTSSHHHHHHHHHHHH
T ss_pred CCHHHHHHHhC-C---CCC-----EEEEeCCCCCchHHHHHHHHHh
Confidence 45778888887 3 111 1333448999999988877654
No 395
>cd01524 RHOD_Pyr_redox Member of the Rhodanese Homology Domain superfamily. Included in this CD are the Lactococcus lactis NADH oxidase, Bacillus cereus NADH dehydrogenase, and Bacteroides thetaiotaomicron pyridine nucleotide-disulphide oxidoreductase, and similar rhodanese-like domains found C-terminal of the pyridine nucleotide-disulphide oxidoreductase (Pyr-redox) domain and the Pyr-redox dimerization domain.
Probab=22.65 E-value=1.1e+02 Score=27.00 Aligned_cols=34 Identities=21% Similarity=0.230 Sum_probs=28.2
Q ss_pred eEEEEecchhHHHHHHHHHhhcCCeEEEecCCCC
Q 001840 854 KSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMS 887 (1007)
Q Consensus 854 KvIIFsq~~~~ld~L~~~L~~~gi~~~~i~Gs~s 887 (1007)
++|+||..-.........|+..|+.+..++|++.
T Consensus 53 ~vvl~c~~g~~a~~~a~~L~~~G~~v~~l~GG~~ 86 (90)
T cd01524 53 EIIVYCAVGLRGYIAARILTQNGFKVKNLDGGYK 86 (90)
T ss_pred cEEEEcCCChhHHHHHHHHHHCCCCEEEecCCHH
Confidence 8899998766677778889999998888999874
No 396
>PRK13556 azoreductase; Provisional
Probab=22.23 E-value=54 Score=34.49 Aligned_cols=30 Identities=27% Similarity=0.499 Sum_probs=26.1
Q ss_pred cccCCEEEEecCCCC---CChhHHHhHhhhccC
Q 001840 920 MVAASHVILLDLWWN---PTTEDQAVDRAHRIG 949 (1007)
Q Consensus 920 L~~A~~VI~~Dp~WN---p~~e~QaigRi~RiG 949 (1007)
|..|+.||+.-|-|| |+...+.|||+.|.|
T Consensus 87 l~~AD~iVi~~P~yn~~~Pa~LK~~iD~v~~~g 119 (208)
T PRK13556 87 FLEADKVVFAFPLWNFTIPAVLHTYIDYLNRAG 119 (208)
T ss_pred HHHCCEEEEeccccccCCcHHHHHHHHHHhcCC
Confidence 556899999999998 678889999999986
No 397
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=22.19 E-value=5e+02 Score=36.05 Aligned_cols=51 Identities=27% Similarity=0.183 Sum_probs=35.1
Q ss_pred eeEEEEccCcccCCcccHHHHHHHhccc-CcEEEEeccCCCCChhHHHHHHHHH
Q 001840 512 WFRVVLDEAQTIKNHRTQVARACCSLRA-KRRWCLSGTPIQNSIDDLYSYFRFL 564 (1007)
Q Consensus 512 w~rVIlDEAH~iKN~~s~~~kal~~L~a-~~r~lLTGTPi~N~l~DL~sll~fL 564 (1007)
-.++|||||-.+.+. ...+.+..+.. ..|++|.|=+-|-..-+--..|+.|
T Consensus 931 ~~llIVDEASMV~~~--~m~~ll~~~~~~garvVLVGD~~QL~sV~aG~~F~~l 982 (1623)
T PRK14712 931 NTLFLLDESSMVGNT--DMARAYALIAAGGGRAVASGDTDQLQAIAPGQPFRLQ 982 (1623)
T ss_pred CcEEEEEccccccHH--HHHHHHHhhhhCCCEEEEEcchhhcCCCCCCHHHHHH
Confidence 368999999998764 44455555543 5799999988777665544455544
No 398
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=22.11 E-value=48 Score=37.85 Aligned_cols=41 Identities=24% Similarity=0.506 Sum_probs=31.6
Q ss_pred ccccccccCCC---CCCccccccCcccchhhhhhhccCCC--CCCC
Q 001840 717 SSAICCVCSDP---PEDSVVTMCGHVFCYQCASEYITGDD--NMCP 757 (1007)
Q Consensus 717 ~~~~C~~c~d~---~~~~v~t~CgH~~c~~ci~~~~~~~~--~~cp 757 (1007)
+..+||+-.+. .+.|+--.|||+.|.+.+....++.. ..||
T Consensus 333 SvF~CPVlKeqtsdeNPPm~L~CGHVISkdAlnrLS~ng~~sfKCP 378 (394)
T KOG2817|consen 333 SVFICPVLKEQTSDENPPMMLICGHVISKDALNRLSKNGSQSFKCP 378 (394)
T ss_pred ceeecccchhhccCCCCCeeeeccceecHHHHHHHhhCCCeeeeCC
Confidence 45678876543 23489999999999999999888776 5666
No 399
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=22.00 E-value=49 Score=30.45 Aligned_cols=30 Identities=43% Similarity=0.883 Sum_probs=23.9
Q ss_pred ccccccccCCCCCC--ccccccCcccchhhhh
Q 001840 717 SSAICCVCSDPPED--SVVTMCGHVFCYQCAS 746 (1007)
Q Consensus 717 ~~~~C~~c~d~~~~--~v~t~CgH~~c~~ci~ 746 (1007)
....|.+|..+... -++.+|||++...|..
T Consensus 77 ~~~~C~vC~k~l~~~~f~~~p~~~v~H~~C~~ 108 (109)
T PF10367_consen 77 ESTKCSVCGKPLGNSVFVVFPCGHVVHYSCIK 108 (109)
T ss_pred CCCCccCcCCcCCCceEEEeCCCeEEeccccc
Confidence 45679999988765 3677999999999964
No 400
>PF10593 Z1: Z1 domain; InterPro: IPR018310 This entry represents the Z1 domain of unknown function that is found in a group of putative endonucleases. This domain is found associated with a helicase domain of superfamily type II [].
Probab=21.87 E-value=4.2e+02 Score=28.66 Aligned_cols=109 Identities=13% Similarity=0.168 Sum_probs=73.5
Q ss_pred ecchhHHHHHHHHHhhcCCeEEEecCCCChHHHHHHHHhhccCcc--cceeeeeccCcccccccccCCEEEEecCCCCCC
Q 001840 859 SQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDRE--ITVMLMSLKAGNLGLNMVAASHVILLDLWWNPT 936 (1007)
Q Consensus 859 sq~~~~ld~L~~~L~~~gi~~~~i~Gs~s~~~R~~~I~~F~~~~~--~~VlLlStkagg~GLNL~~A~~VI~~Dp~WNp~ 936 (1007)
-.|.+..+.|...+.. ++.+..++++.+.+. -.|.+.+. ..++++.-..++.||.|..-...++.=.+=+-.
T Consensus 94 ~s~~ei~~~l~~~~~~-~~~v~~vNS~~~~~~-----ldy~~~~~~~~~~I~VGGn~LsRGlTleGL~vsYf~R~s~~~D 167 (239)
T PF10593_consen 94 PSWEEIKPELPKAISD-GIEVVVVNSGSSDDS-----LDYDDGENLGLNVIAVGGNKLSRGLTLEGLTVSYFLRNSKQYD 167 (239)
T ss_pred cCHHHHHHHHHHHHhc-CceEEEEeCCCcccc-----ccccccccCCceEEEECCccccCceeECCcEEEEecCCCchHH
Confidence 3477888889988888 899999997665433 44554322 477888889999999999987777765554555
Q ss_pred hhHHHhHhhhccCCccc-EEEEEEEeCCCHHHHHHHHHHHH
Q 001840 937 TEDQAVDRAHRIGQTRP-VTVTRLTIRDTVEDRILKLQDDK 976 (1007)
Q Consensus 937 ~e~QaigRi~RiGQ~k~-V~VyrLi~~~TIEe~I~~lq~~K 976 (1007)
++.| .||-. |=.+. .-+.|+++...+.+....+.+.-
T Consensus 168 TL~Q-mgRwF--GYR~gY~dl~Ri~~~~~l~~~f~~i~~~~ 205 (239)
T PF10593_consen 168 TLMQ-MGRWF--GYRPGYEDLCRIYMPEELYDWFRHIAEAE 205 (239)
T ss_pred HHHH-Hhhcc--cCCcccccceEEecCHHHHHHHHHHHHHH
Confidence 5555 46653 44433 55667777776666555444433
No 401
>PRK10638 glutaredoxin 3; Provisional
Probab=21.78 E-value=3e+02 Score=23.90 Aligned_cols=56 Identities=7% Similarity=0.167 Sum_probs=37.0
Q ss_pred eEEEEe-cchhHHHHHHHHHhhcCCeEEEecCCCChHHHHHHHHhhccCcccceeeee
Q 001840 854 KSIVFS-QWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMS 910 (1007)
Q Consensus 854 KvIIFs-q~~~~ld~L~~~L~~~gi~~~~i~Gs~s~~~R~~~I~~F~~~~~~~VlLlS 910 (1007)
++.||+ .+-.....+...|.+.|+.|..++=......++.+.+ ......+.++++.
T Consensus 3 ~v~ly~~~~Cp~C~~a~~~L~~~gi~y~~~dv~~~~~~~~~l~~-~~g~~~vP~i~~~ 59 (83)
T PRK10638 3 NVEIYTKATCPFCHRAKALLNSKGVSFQEIPIDGDAAKREEMIK-RSGRTTVPQIFID 59 (83)
T ss_pred cEEEEECCCChhHHHHHHHHHHcCCCcEEEECCCCHHHHHHHHH-HhCCCCcCEEEEC
Confidence 677887 4446778888999999999988877666555555443 3333344455443
No 402
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=21.60 E-value=3.4e+02 Score=31.86 Aligned_cols=20 Identities=25% Similarity=0.390 Sum_probs=15.4
Q ss_pred eeecCCCCchHHHHHHHHHh
Q 001840 300 ILADDQGLGKTISIIALIQM 319 (1007)
Q Consensus 300 ILADdmGLGKTiqaIali~~ 319 (1007)
.|.-..|.|||..+..|+..
T Consensus 245 ~LVGptGvGKTTTiaKLA~~ 264 (436)
T PRK11889 245 ALIGPTGVGKTTTLAKMAWQ 264 (436)
T ss_pred EEECCCCCcHHHHHHHHHHH
Confidence 45566999999988777654
No 403
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=21.58 E-value=2.5e+02 Score=36.40 Aligned_cols=62 Identities=3% Similarity=0.147 Sum_probs=40.0
Q ss_pred CeEEEEecchhHH----HHHHHHHhhcC-CeEEE-ecCCCChHHHHHHHHhhccCcccceeeeeccCcc
Q 001840 853 IKSIVFSQWTRML----DLVENSLNQHC-IQYRR-LDGTMSLPARDRAVKDFNTDREITVMLMSLKAGN 915 (1007)
Q Consensus 853 ~KvIIFsq~~~~l----d~L~~~L~~~g-i~~~~-i~Gs~s~~~R~~~I~~F~~~~~~~VlLlStkagg 915 (1007)
.|++|.-.-+..+ +.|+......+ ..... ++|.++.++++++.++|.++ +..||+.|+.-..
T Consensus 126 kr~yii~PT~~Lv~Q~~~kl~~~~e~~~~~~~~~~yh~~l~~~ekee~le~i~~g-dfdIlitTs~FL~ 193 (1187)
T COG1110 126 KRVYIIVPTTTLVRQVYERLKKFAEDAGSLDVLVVYHSALPTKEKEEALERIESG-DFDILITTSQFLS 193 (1187)
T ss_pred CeEEEEecCHHHHHHHHHHHHHHHhhcCCcceeeeeccccchHHHHHHHHHHhcC-CccEEEEeHHHHH
Confidence 3555554444444 44444444444 33222 89999999999999999976 6778887755443
No 404
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=21.49 E-value=2.1e+02 Score=35.47 Aligned_cols=65 Identities=15% Similarity=0.189 Sum_probs=50.3
Q ss_pred hHHHHHHHHHhhcCCeEEEecCCCChHHHHHHHHhhccCcccceeeeeccCcccccccccCCEEEE
Q 001840 863 RMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVIL 928 (1007)
Q Consensus 863 ~~ld~L~~~L~~~gi~~~~i~Gs~s~~~R~~~I~~F~~~~~~~VlLlStkagg~GLNL~~A~~VI~ 928 (1007)
+..+-+..+|...|+++..++|++..++|.++.++-.++ ++.+++.+-.-.-..++++..-.||+
T Consensus 326 QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G-~~~ivVGTHALiQd~V~F~~LgLVIi 390 (677)
T COG1200 326 QHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLASG-EIDIVVGTHALIQDKVEFHNLGLVII 390 (677)
T ss_pred HHHHHHHHHhhhcCCeEEEeecccchhHHHHHHHHHhCC-CCCEEEEcchhhhcceeecceeEEEE
Confidence 345667778888899999999999999999999998865 77788877555666666666555543
No 405
>KOG1807 consensus Helicases [Replication, recombination and repair]
Probab=21.34 E-value=2.5e+02 Score=35.21 Aligned_cols=41 Identities=24% Similarity=0.263 Sum_probs=33.7
Q ss_pred ccCchHHHHHHHHHHHhhhcCCCccCceeecCCCCchHHHHHHHHHhh
Q 001840 273 VNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQ 320 (1007)
Q Consensus 273 ~~LrpyQ~~~v~wml~~e~~~~~~~GGILADdmGLGKTiqaIali~~~ 320 (1007)
+-|-.-|+.|...|+..+. .|+--..|.|||.+++-++...
T Consensus 377 ~ildsSq~~A~qs~ltyel-------sliqgppGTgkt~vtlkav~tL 417 (1025)
T KOG1807|consen 377 VILDSSQQFAKQSKLTYEL-------SLIQGPPGTGKTLVTLKAVDTL 417 (1025)
T ss_pred eeecHHHHHHHHHHhhhhh-------heeecCCCCCceeehHHHHHHH
Confidence 4577789999999998876 4888899999999888776553
No 406
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=21.21 E-value=60 Score=25.76 Aligned_cols=38 Identities=26% Similarity=0.712 Sum_probs=29.0
Q ss_pred cccccCC--CCCCccccccC-----cccchhhhhhhccCC-CCCCC
Q 001840 720 ICCVCSD--PPEDSVVTMCG-----HVFCYQCASEYITGD-DNMCP 757 (1007)
Q Consensus 720 ~C~~c~d--~~~~~v~t~Cg-----H~~c~~ci~~~~~~~-~~~cp 757 (1007)
+|.||.+ ..+++++.+|. |.+=..|+..|+... ...||
T Consensus 1 ~CrIC~~~~~~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~~~~C~ 46 (49)
T smart00744 1 ICRICHDEGDEGDPLVSPCRCKGSLKYVHQECLERWINESGNKTCE 46 (49)
T ss_pred CccCCCCCCCCCCeeEeccccCCchhHHHHHHHHHHHHHcCCCcCC
Confidence 4788886 56678899995 788899999998654 34666
No 407
>KOG4367 consensus Predicted Zn-finger protein [Function unknown]
Probab=20.90 E-value=40 Score=38.41 Aligned_cols=32 Identities=25% Similarity=0.667 Sum_probs=28.5
Q ss_pred ccccccCCCCCCccccccCcccchhhhhhhcc
Q 001840 719 AICCVCSDPPEDSVVTMCGHVFCYQCASEYIT 750 (1007)
Q Consensus 719 ~~C~~c~d~~~~~v~t~CgH~~c~~ci~~~~~ 750 (1007)
..|++|..-.++|++..|+|..|.-|-...+.
T Consensus 5 lkc~vc~~f~~epiil~c~h~lc~~ca~~~~~ 36 (699)
T KOG4367|consen 5 LKCPVCGSFYREPIILPCSHNLCQACARNILV 36 (699)
T ss_pred ccCceehhhccCceEeecccHHHHHHHHhhcc
Confidence 46999999999999999999999999877654
No 408
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=20.84 E-value=5.4e+02 Score=26.07 Aligned_cols=57 Identities=9% Similarity=0.243 Sum_probs=45.2
Q ss_pred eEEEEecchhHHHHHHHHHhhc--CCeEEE-ecCCCChHHHHHHHHhhccCcccceeeeec
Q 001840 854 KSIVFSQWTRMLDLVENSLNQH--CIQYRR-LDGTMSLPARDRAVKDFNTDREITVMLMSL 911 (1007)
Q Consensus 854 KvIIFsq~~~~ld~L~~~L~~~--gi~~~~-i~Gs~s~~~R~~~I~~F~~~~~~~VlLlSt 911 (1007)
++-++-.-...++.+.+.|++. |+.++- .+|-+...+..++++..+.. .+.++++.+
T Consensus 48 ~v~llG~~~~~~~~~~~~l~~~yp~l~i~g~~~g~~~~~~~~~i~~~I~~~-~pdiv~vgl 107 (171)
T cd06533 48 RVFLLGAKPEVLEKAAERLRARYPGLKIVGYHHGYFGPEEEEEIIERINAS-GADILFVGL 107 (171)
T ss_pred eEEEECCCHHHHHHHHHHHHHHCCCcEEEEecCCCCChhhHHHHHHHHHHc-CCCEEEEEC
Confidence 8888999999999999888887 777665 68888888877788888754 566777664
No 409
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=20.79 E-value=4e+02 Score=30.34 Aligned_cols=49 Identities=10% Similarity=0.030 Sum_probs=34.4
Q ss_pred cCchHHHHHHHHHHHhhhcCCCccCceeecCCCCchHHHHHHHHHhhcc
Q 001840 274 NLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRS 322 (1007)
Q Consensus 274 ~LrpyQ~~~v~wml~~e~~~~~~~GGILADdmGLGKTiqaIali~~~~~ 322 (1007)
.++|+|...-..+.+......-..+=+++-.-|+||+..|.+++....+
T Consensus 2 ~~yPWl~~~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC 50 (334)
T PRK07993 2 KWYPWLRPDYEQLVGSYQAGRGHHALLIQALPGMGDDALIYALSRWLMC 50 (334)
T ss_pred CCCCCChHHHHHHHHHHHcCCcceEEeeECCCCCCHHHHHHHHHHHHcC
Confidence 4678888877766655433212233467899999999999999877654
No 410
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=20.68 E-value=1.3e+02 Score=38.24 Aligned_cols=20 Identities=30% Similarity=0.400 Sum_probs=17.1
Q ss_pred ceeecCCCCchHHHHHHHHH
Q 001840 299 GILADDQGLGKTISIIALIQ 318 (1007)
Q Consensus 299 GILADdmGLGKTiqaIali~ 318 (1007)
-||-=+.|.|||..+-++..
T Consensus 210 ~LLvGppGvGKT~lae~la~ 229 (758)
T PRK11034 210 PLLVGESGVGKTAIAEGLAW 229 (758)
T ss_pred eEEECCCCCCHHHHHHHHHH
Confidence 58999999999998877764
No 411
>PF12622 NpwBP: mRNA biogenesis factor
Probab=20.64 E-value=49 Score=26.28 Aligned_cols=11 Identities=36% Similarity=0.320 Sum_probs=9.6
Q ss_pred EEEecCCCCCC
Q 001840 926 VILLDLWWNPT 936 (1007)
Q Consensus 926 VI~~Dp~WNp~ 936 (1007)
=|+|||.|||.
T Consensus 4 SiyydP~~NP~ 14 (48)
T PF12622_consen 4 SIYYDPELNPL 14 (48)
T ss_pred ceecCCccCCC
Confidence 48999999985
No 412
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=20.26 E-value=6.5e+02 Score=25.84 Aligned_cols=57 Identities=11% Similarity=0.172 Sum_probs=44.3
Q ss_pred eEEEEecchhHHHHHHHHHhhc--CCeEEEecCCCChHHHHHHHHhhccCcccceeeeec
Q 001840 854 KSIVFSQWTRMLDLVENSLNQH--CIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSL 911 (1007)
Q Consensus 854 KvIIFsq~~~~ld~L~~~L~~~--gi~~~~i~Gs~s~~~R~~~I~~F~~~~~~~VlLlSt 911 (1007)
++-++---..+++.+.+.|++. ++.++-.+|-.+.++.+++++.-+.. .+.++++.+
T Consensus 50 ~vfllG~~~~v~~~~~~~l~~~yP~l~i~g~~g~f~~~~~~~i~~~I~~s-~~dil~Vgl 108 (177)
T TIGR00696 50 PIFLYGGKPDVLQQLKVKLIKEYPKLKIVGAFGPLEPEERKAALAKIARS-GAGIVFVGL 108 (177)
T ss_pred eEEEECCCHHHHHHHHHHHHHHCCCCEEEEECCCCChHHHHHHHHHHHHc-CCCEEEEEc
Confidence 8888888889999999999887 67766668888887777788887753 556666653
No 413
>cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily. This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain.
Probab=20.23 E-value=1.4e+02 Score=26.99 Aligned_cols=34 Identities=18% Similarity=0.154 Sum_probs=28.6
Q ss_pred eEEEEecchhHHHHHHHHHhhcCCeEEEecCCCC
Q 001840 854 KSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMS 887 (1007)
Q Consensus 854 KvIIFsq~~~~ld~L~~~L~~~gi~~~~i~Gs~s 887 (1007)
++||+|..-.........|...|+.+..+.|++.
T Consensus 63 ~ivv~C~~G~rs~~aa~~L~~~G~~~~~l~GG~~ 96 (100)
T cd01523 63 EVTVICAKEGSSQFVAELLAERGYDVDYLAGGMK 96 (100)
T ss_pred eEEEEcCCCCcHHHHHHHHHHcCceeEEeCCcHH
Confidence 8899998876777888899999999878888873
Done!