Query 001841
Match_columns 1007
No_of_seqs 295 out of 2390
Neff 7.5
Searched_HMMs 29240
Date Tue Mar 26 17:21:35 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/001841.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1135-1139//hhsearch_pdb/001841hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mwy_W Chromo domain-containin 1.0 1 1 672.5 32.8 485 266-1006 228-731 (800)
2 1z3i_X Similar to RAD54-like; 1.0 1 1 671.9 35.6 498 266-1007 48-570 (644)
3 1z63_A Helicase of the SNF2/RA 1.0 1 1 624.8 37.3 464 267-1007 31-495 (500)
4 3dmq_A RNA polymerase-associat 1.0 1 1 458.8 25.0 426 271-982 150-634 (968)
5 1wp9_A ATP-dependent RNA helic 1.0 1 1 375.1 29.6 465 272-981 7-493 (494)
6 1z5z_A Helicase of the SNF2/RA 1.0 1 1 347.6 22.3 255 600-1007 11-266 (271)
7 2fwr_A DNA repair protein RAD2 1.0 1 1 335.0 18.0 378 272-980 91-471 (472)
8 4a2w_A RIG-I, retinoic acid in 1.0 1 1 325.3 27.6 476 272-986 246-771 (936)
9 4a2q_A RIG-I, retinoic acid in 1.0 1 1 316.3 28.3 472 272-986 246-771 (797)
10 4a2p_A RIG-I, retinoic acid in 1.0 1 1 313.4 23.5 159 805-1002 370-540 (556)
No 1
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=672.50 Aligned_cols=485 Identities=27% Similarity=0.437 Sum_probs=391.1
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHCCCCCCCHHHHCCCCCCCCCCCCCC
Q ss_conf 89884445672578999999998320477756761223889816899999998510112331021203432123668988
Q 001841 266 LPDGLLSVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLDDD 345 (1007)
Q Consensus 266 ~p~~~~~~~LrpyQ~~av~wml~~e~~~~~~~GGILADdmGLGKTiqaIali~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 345 (1007)
.|+......|||||+.|+.||+..... ..||||||+||||||+|+|+++......
T Consensus 228 ~p~~~~~~~Lr~yQ~egv~~l~~~~~~---~~~~ILademGlGKT~~ai~~i~~l~~~---------------------- 282 (800)
T 3mwy_W 228 QPPFIKGGELRDFQLTGINWMAFLWSK---GDNGILADEMGLGKTVQTVAFISWLIFA---------------------- 282 (800)
T ss_dssp CCTTCCSSCCCTHHHHHHHHHHHHHTT---TCCEEECCCTTSSTTHHHHHHHHHHHHH----------------------
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHC---CCCEEEEECCCCCHHHHHHHHHHHHHHH----------------------
T ss_conf 998657997589999999999998513---8998998278753299999999999986----------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCC
Q ss_conf 88887674322236988999998766665443478889996499918235999999999776999981899982899888
Q 001841 346 DDNGNAGLDKVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTK 425 (1007)
Q Consensus 346 ~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tLIV~P~sLl~qW~~Ei~k~~~~~~~l~vlv~~G~~r~~ 425 (1007)
....+++|||||.+++.||.+||.+|++ .+++++|+|....+
T Consensus 283 -----------------------------------~~~~~~~LIV~P~sll~qW~~E~~~~~p---~~~v~~~~g~~~~r 324 (800)
T 3mwy_W 283 -----------------------------------RRQNGPHIIVVPLSTMPAWLDTFEKWAP---DLNCICYMGNQKSR 324 (800)
T ss_dssp -----------------------------------HSCCSCEEEECCTTTHHHHHHHHHHHST---TCCEEECCCSSHHH
T ss_pred -----------------------------------CCCCCCEEEEECCHHHHHHHHHHHHHCC---CCEEEEEECCHHHH
T ss_conf -----------------------------------0779988999880389999999999779---96499982777778
Q ss_pred CC--------------CCCCCCCEEEECHHHHHCCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 91--------------0127875999650233101799999855666320276567761122322210122111125678
Q 001841 426 DP--------------VELAKYDVVLTTYSIVTNEVPKQPSVDEEEADEKNGETYGLSSEFSVNKKRKKISNVSKRGKKG 491 (1007)
Q Consensus 426 ~~--------------~~l~~~dVVItTy~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~k~~~~~~kk~k~~ 491 (1007)
.. .....++|+||||+++.++..
T Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~dvvitTy~~l~~~~~------------------------------------------- 361 (800)
T 3mwy_W 325 DTIREYEFYTNPRAKGKKTMKFNVLLTTYEYILKDRA------------------------------------------- 361 (800)
T ss_dssp HHHHHHHSCSCC-----CCCCCSEEEECTTHHHHTHH-------------------------------------------
T ss_pred HHHHHHHHHCCCCCCCCCCCCCCEEEECHHHHHHHHH-------------------------------------------
T ss_conf 8988877622630013445667889906999986499-------------------------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCCH
Q ss_conf 88887777655888863210209999157545882117999998611584799955588799557998999880698311
Q 001841 492 KKGNVNSSIDYGCGPLAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRFLKYDPYAV 571 (1007)
Q Consensus 492 ~~~~~~~~~~~~~~~L~~~~w~rVIiDEAH~iKN~~t~~~ka~~~L~a~~rwlLTGTPi~N~l~DL~sll~fL~~~~~~~ 571 (1007)
.|..+.|.+|||||||++||..++.+++++.+++.+||+|||||++|++.|||++++||.|+.|..
T Consensus 362 --------------~l~~~~w~~vIvDEaH~lkn~~s~~~~~l~~l~~~~rl~LTgTPiqN~l~el~~ll~fL~p~~~~~ 427 (800)
T 3mwy_W 362 --------------ELGSIKWQFMAVDEAHRLKNAESSLYESLNSFKVANRMLITGTPLQNNIKELAALVNFLMPGRFTI 427 (800)
T ss_dssp --------------HHHTSEEEEEEETTGGGGCCSSSHHHHHHTTSEEEEEEEECSCCCSSCSHHHHHHHHHHCSCCC--
T ss_pred --------------HHHCCCCCEEEHHHHHHHCCCHHHHHHHHHHHHHCCEEEEECCCCCCCHHHHHHHHHHHCCCCCCC
T ss_conf --------------983377325641344441471019999999752243897227857799999999999858663674
Q ss_pred HHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 69999770367666856679999999988652201375457976436999648999932999999999999999999999
Q 001841 572 YKSFYSTIKIPISRNSLHGYKKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEWAFYKKLESDSLKKFK 651 (1007)
Q Consensus 572 ~~~F~~~~~~pi~~~~~~~~~~L~~~L~~~~lRRtk~~v~~g~~i~~LP~k~~~~v~v~ls~~er~~Y~~l~~~~~~~~~ 651 (1007)
...|..... ..........|+.+++++++||++.++.. .||++.+.++.|+|++.|+++|..+.......+.
T Consensus 428 ~~~~~~~~~---~~~~~~~~~~L~~~l~p~~lRR~k~dv~~-----~LP~k~~~~v~v~ls~~q~~~Y~~i~~~~~~~l~ 499 (800)
T 3mwy_W 428 DQEIDFENQ---DEEQEEYIHDLHRRIQPFILRRLKKDVEK-----SLPSKTERILRVELSDVQTEYYKNILTKNYSALT 499 (800)
T ss_dssp -------CC---TTHHHHHHHHHHHTTGGGEEECCGGGGTT-----TSCCEEEEEEEECCCHHHHHHHHHHHHHCCC---
T ss_pred HHHHCCCCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----CCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHH
T ss_conf 344232223---14689999999999757775320876643-----1688279999707999999999999999999986
Q ss_pred HHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf 99620877510899999999977520731001123445423011888611993799999961011444233458999995
Q 001841 652 AFADAGTVNQNYANILLMLLRLRQACDHPLLVKEYDFDSVGKISGEMAKRLPRDMLIDLLSRLETSSAICCVCSDPPEDS 731 (1007)
Q Consensus 652 ~~~~~g~~~~~~~~il~~L~rLRq~c~hP~L~~~~~~~~~~~~~~e~~~~~~~~~~~~~l~~le~~~~~C~iC~d~~~~~ 731 (1007)
.. .......++..+++||++|+||.++............. .......
T Consensus 500 ~~-----~~~~~~~~l~~l~~Lrk~~~hp~l~~~~~~~~~~~~~~---~~~~~~~------------------------- 546 (800)
T 3mwy_W 500 AG-----AKGGHFSLLNIMNELKKASNHPYLFDNAEERVLQKFGD---GKMTREN------------------------- 546 (800)
T ss_dssp ------------CTHHHHHHHHHHHHHCGGGSSSHHHHHCCCC-------CCSHH-------------------------
T ss_pred HC-----CCCCHHHHHHHHHHHHHHHCCHHHHCCHHHHHHHHCCC---CCCCHHH-------------------------
T ss_conf 10-----35454469999999998735865423557899886156---6555778-------------------------
Q ss_pred CCCCCCCCCCHHHHHHHCCCCCCCCCCCCHHHCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 00346952202334321028999999840010025650101011133557999999999943455787676442046999
Q 001841 732 VVTMCGHVFCYQCASEYITGDDNMCPAPRCKEQLGADVVFSKTTLKNCVSDDGGGSPTDSPFADKSGILDNEYISSKIRT 811 (1007)
Q Consensus 732 vit~C~H~~c~~ci~~~~~~~~~~cp~~~cr~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SsKl~~ 811 (1007)
. .......|+|+..
T Consensus 547 ------------~------------------------------------------------------~~~l~~~s~K~~~ 560 (800)
T 3mwy_W 547 ------------V------------------------------------------------------LRGLIMSSGKMVL 560 (800)
T ss_dssp ------------H------------------------------------------------------HHHHHHTCHHHHH
T ss_pred ------------H------------------------------------------------------HHHHHHCCHHHHH
T ss_conf ------------8------------------------------------------------------8876642769999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHCCCEEEEECCCCCHHHH
Q ss_conf 99999863110465524665200268898765568998899729999052568999999975359728973288896899
Q 001841 812 VLDILHTQCELNTKCSIVEIHDLAGSNGSSAVHSKSPIEGPIKSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPAR 891 (1007)
Q Consensus 812 l~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvIIFsqft~~ld~L~~~L~~~gi~~~~i~Gs~s~~eR 891 (1007)
+.++|..+...+. |+||||+|+.++++|+..|...|+.+.+++|+++..+|
T Consensus 561 L~~lL~~~~~~g~-----------------------------kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR 611 (800)
T 3mwy_W 561 LDQLLTRLKKDGH-----------------------------RVLIFSQMVRMLDILGDYLSIKGINFQRLDGTVPSAQR 611 (800)
T ss_dssp HHHHHHHHTTTTC-----------------------------CEEEEESCHHHHHHHHHHHHHHTCCCEEESTTSCHHHH
T ss_pred HHHHHHHHHHCCC-----------------------------EEEEEECHHHHHHHHHHHHHHCCCCEEEEECCCCHHHH
T ss_conf 9999999752798-----------------------------18999635999999999998679978999699999999
Q ss_pred HHHHHHHCCCC-CCCEEEEECCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHCCCCCCCEEEEEEEECCCHHHHHH
Q ss_conf 99999550595-43366630357655554566798999658999792679967210139824399999995899999999
Q 001841 892 DRAVKDFNTDR-EITVMLMSLKAGNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVEDRIL 970 (1007)
Q Consensus 892 ~~~I~~F~~~~-~~~VLLiS~kagg~GLNL~~A~~VI~~Dp~WNp~~e~QAigRv~RiGQ~k~V~V~~li~~dTiEe~Il 970 (1007)
+++++.|+++. ...|||+|+++||+||||+.|++||+||++|||..+.||+||+||+||+++|+||+|++++|+|++|+
T Consensus 612 ~~~i~~F~~~~~~~~v~LlSt~agg~GlNL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vyrlv~~~TiEe~i~ 691 (800)
T 3mwy_W 612 RISIDHFNSPDSNDFVFLLSTRAGGLGINLMTADTVVIFDSDWNPQADLQAMARAHRIGQKNHVMVYRLVSKDTVEEEVL 691 (800)
T ss_dssp HHHHHTTSSTTCSCCCEEEEHHHHTTTCCCTTCCEEEESSCCSCSHHHHHHHTTTSCSSCCSCEEEEEEEETTSHHHHHH
T ss_pred HHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCEEEEEEEECCCCHHHHHH
T ss_conf 99999960899982599974544567877601636899468788116899999988558986379999861998999999
Q ss_pred HHHHHHHHHHHHHHCCCCCCC----CCCCCCHHHHHHHHC
Q ss_conf 999999999997626888998----667889999986423
Q 001841 971 KLQDDKRKMVASAFGEDQGGG----TASRLTVEDLRYLFM 1006 (1007)
Q Consensus 971 ~lq~~K~~li~~~~g~~~~~~----~~~~l~~edl~~lf~ 1006 (1007)
+++.+|..+...+++.....+ ....++.+||..|+.
T Consensus 692 ~~~~~K~~l~~~vi~~~~~~~~~~~~~~~~~~~el~~ll~ 731 (800)
T 3mwy_W 692 ERARKKMILEYAIISLGVTDGNKYTKKNEPNAGELSAILK 731 (800)
T ss_dssp HHHHHHTTSCC----------------CCCCHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHH
T ss_conf 9999988899999703756653211234789999999997
No 2
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=1.00 E-value=1 Score=671.92 Aligned_cols=498 Identities=26% Similarity=0.374 Sum_probs=394.5
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHCC--CCCCCCEEECCCCCCHHHHHHHHHHHHCCCCCCCHHHHCCCCCCCCCCCC
Q ss_conf 8988444567257899999999832047--77567612238898168999999985101123310212034321236689
Q 001841 266 LPDGLLSVNLLKHQKIALAWMLQKETRS--LHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLD 343 (1007)
Q Consensus 266 ~p~~~~~~~LrpyQ~~av~wml~~e~~~--~~~~GGILADdmGLGKTiqaIali~~~~~~~~~~~~~~~~~~~~~a~~~~ 343 (1007)
+++. +...|||||++|+.||+...... ....||||||+||+|||+|+|++|.......
T Consensus 48 ~~p~-l~~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~ILad~mGlGKT~~~i~~i~~l~~~~------------------- 107 (644)
T 1z3i_X 48 VDPV-LSKVLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQS------------------- 107 (644)
T ss_dssp CCHH-HHTTCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHHHCC-------------------
T ss_pred ECHH-HHHCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHC-------------------
T ss_conf 1856-40035199999999999842335445888759610787429999999999999748-------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCHHHHHHHHHHHHHHCCCCCCEEEEEEECCCC
Q ss_conf 88888876743222369889999987666654434788899964999182359999999997769999818999828998
Q 001841 344 DDDDNGNAGLDKVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSR 423 (1007)
Q Consensus 344 ~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tLIV~P~sLl~qW~~Ei~k~~~~~~~l~vlv~~G~~r 423 (1007)
.......+++|||||.+|+.||.+||.+|++. .+.++.++++.+
T Consensus 108 ----------------------------------~~~~p~~~~~LiV~P~sll~qW~~E~~~~~~~--~~~~~~~~~g~~ 151 (644)
T 1z3i_X 108 ----------------------------------PDCKPEIDKVIVVSPSSLVRNWYNEVGKWLGG--RVQPVAIDGGSK 151 (644)
T ss_dssp ----------------------------------TTSSCSCSCEEEEECHHHHHHHHHHHHHHHGG--GCCEEEECSSCH
T ss_pred ----------------------------------CCCCCCCCCEEEEECHHHHHHHHHHHHHHCCC--CEEEEEEECCCH
T ss_conf ----------------------------------66567778579996589988799999997588--725999808988
Q ss_pred CCCC----------CCCCCCCEEEECHHHHHCCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 8891----------012787599965023310179999985566632027656776112232221012211112567888
Q 001841 424 TKDP----------VELAKYDVVLTTYSIVTNEVPKQPSVDEEEADEKNGETYGLSSEFSVNKKRKKISNVSKRGKKGKK 493 (1007)
Q Consensus 424 ~~~~----------~~l~~~dVVItTy~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~k~~~~~~kk~k~~~~ 493 (1007)
.... .....++|+|+||+++.+...
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~~--------------------------------------------- 186 (644)
T 1z3i_X 152 DEIDSKLVNFISQQGMRIPTPILIISYETFRLHAE--------------------------------------------- 186 (644)
T ss_dssp HHHHHHHHHHHCCCSSCCSCCEEEEEHHHHHHHTT---------------------------------------------
T ss_pred HHHHHHHHHHHHHCCCCCCCCEEEEEHHHHHHHHH---------------------------------------------
T ss_conf 99999999998733777787579963899876578---------------------------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCCHHH
Q ss_conf 88777765588886321020999915754588211799999861158479995558879955799899988069831169
Q 001841 494 GNVNSSIDYGCGPLAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRFLKYDPYAVYK 573 (1007)
Q Consensus 494 ~~~~~~~~~~~~~L~~~~w~rVIiDEAH~iKN~~t~~~ka~~~L~a~~rwlLTGTPi~N~l~DL~sll~fL~~~~~~~~~ 573 (1007)
.|....|++||+||||.+||..++.++++..+++.+||+|||||++|++.|||++++||+|++++.+.
T Consensus 187 ------------~l~~~~~~~vI~DEaH~ikn~~~~~~~al~~l~~~~rl~LTgTPiqN~l~El~sll~fl~p~~l~~~~ 254 (644)
T 1z3i_X 187 ------------VLHKGKVGLVICDEGHRLKNSDNQTYLALNSMNAQRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAQ 254 (644)
T ss_dssp ------------TTTTSCCCEEEETTGGGCCTTCHHHHHHHHHHCCSEEEEECSSCSGGGGGGCHHHHHHHHHHHHCCHH
T ss_pred ------------HHHCCCCCEEEEECCEECCCHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCCCHH
T ss_conf ------------75048865799878622478045999999855567379984673458899999999861887689999
Q ss_pred HHHHHCCCCCCCCC------------HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHH
Q ss_conf 99977036766685------------667999999998865220137545797643699964899993299999999999
Q 001841 574 SFYSTIKIPISRNS------------LHGYKKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEWAFYKK 641 (1007)
Q Consensus 574 ~F~~~~~~pi~~~~------------~~~~~~L~~~L~~~~lRRtk~~v~~g~~i~~LP~k~~~~v~v~ls~~er~~Y~~ 641 (1007)
.|...|..|+.++. ......|+.++.++++||++.++.. .||++.+.++.|+|++.|+++|+.
T Consensus 255 ~F~~~f~~pi~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~lRR~k~~v~~-----~LP~k~~~~v~~~ls~~q~~lY~~ 329 (644)
T 1z3i_X 255 EFKKRFEIPILKGRDADASDKDRAAGEQKLQELISIVNRCLIRRTSDILSK-----YLPVKIEQVVCCNLTPLQKELYKL 329 (644)
T ss_dssp HHHHHTHHHHHHHHSTTCCSHHHHHHHHHHHHHHHHHHHHEECCCGGGGGG-----TSCCEEEEEEEECCCHHHHHHHHH
T ss_pred HHHHHHCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HCCCCEEEEEEECCCHHHHHHHHH
T ss_conf 999863261541677677888999999999999999889998710876764-----279836999983799899999999
Q ss_pred HHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHCCCHHHHHHHHHHCCCCCCCC
Q ss_conf 99999999999962087751089999999997752073100112344542301188861199379999996101144423
Q 001841 642 LESDSLKKFKAFADAGTVNQNYANILLMLLRLRQACDHPLLVKEYDFDSVGKISGEMAKRLPRDMLIDLLSRLETSSAIC 721 (1007)
Q Consensus 642 l~~~~~~~~~~~~~~g~~~~~~~~il~~L~rLRq~c~hP~L~~~~~~~~~~~~~~e~~~~~~~~~~~~~l~~le~~~~~C 721 (1007)
+....... ...........++..+++||++|+||.++...... ..+ ...
T Consensus 330 ~~~~~~~~-----~~~~~g~~~~~~l~~l~~Lrk~c~hp~l~~~~~~~-----------------------~~~-~~~-- 378 (644)
T 1z3i_X 330 FLKQAKPV-----ESLQTGKISVSSLSSITSLKKLCNHPALIYEKCLT-----------------------GEE-GFD-- 378 (644)
T ss_dssp HHHHHCGG-----GSSCTTCCCHHHHHHHHHHHHHHHCTHHHHHHHHH-----------------------TCT-TCT--
T ss_pred HHHHHHHH-----HHHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHC-----------------------CCC-HHH--
T ss_conf 99989999-----98762762145999999999995799988888741-----------------------540-035--
Q ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCHHHCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 34589999950034695220233432102899999984001002565010101113355799999999994345578767
Q 001841 722 CVCSDPPEDSVVTMCGHVFCYQCASEYITGDDNMCPAPRCKEQLGADVVFSKTTLKNCVSDDGGGSPTDSPFADKSGILD 801 (1007)
Q Consensus 722 ~iC~d~~~~~vit~C~H~~c~~ci~~~~~~~~~~cp~~~cr~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 801 (1007)
.++. ..| .. ......
T Consensus 379 ---------------------~~~~--------~~~------------------------~~------------~~~~~~ 393 (644)
T 1z3i_X 379 ---------------------GALD--------LFP------------------------QN------------YSTKAV 393 (644)
T ss_dssp ---------------------TGGG--------TSC------------------------SS------------CCSSSC
T ss_pred ---------------------HHHH--------HCC------------------------CC------------CCCCCC
T ss_conf ---------------------5776--------454------------------------21------------110005
Q ss_pred CCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHCCCEEEE
Q ss_conf 64420469999999986311046552466520026889876556899889972999905256899999997535972897
Q 001841 802 NEYISSKIRTVLDILHTQCELNTKCSIVEIHDLAGSNGSSAVHSKSPIEGPIKSIVFSQWTRMLDLVENSLNQHCIQYRR 881 (1007)
Q Consensus 802 ~~~~SsKl~~l~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvIIFsqft~~ld~L~~~L~~~gi~~~~ 881 (1007)
....|+|+..+..++....... +.|+||||+|+.++++|+..|...|+.+.+
T Consensus 394 ~~~~s~K~~~l~~ll~~~~~~~----------------------------~~k~lIFs~~~~~~~~l~~~l~~~g~~~~~ 445 (644)
T 1z3i_X 394 EPQLSGKMLVLDYILAMTRTTT----------------------------SDKVVLVSNYTQTLDLFEKLCRNRRYLYVR 445 (644)
T ss_dssp CGGGSHHHHHHHHHHHHHHHHC----------------------------CCEEEEEESCHHHHHHHHHHHHHHTCCEEE
T ss_pred CCCCCHHHHHHHHHHHHHHHCC----------------------------CCEEEEEECCHHHHHHHHHHHHHCCCCEEE
T ss_conf 7011748999999999986469----------------------------987999980599999999999977997899
Q ss_pred ECCCCCHHHHHHHHHHHCCCCC-CCEEEEECCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHCCCCCCCEEEEEEE
Q ss_conf 3288896899999995505954-336663035765555456679899965899979267996721013982439999999
Q 001841 882 LDGTMSLPARDRAVKDFNTDRE-ITVMLMSLKAGNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLT 960 (1007)
Q Consensus 882 i~Gs~s~~eR~~~I~~F~~~~~-~~VLLiS~kagg~GLNL~~A~~VI~~Dp~WNp~~e~QAigRv~RiGQ~k~V~V~~li 960 (1007)
++|+++.++|+++++.|++++. ..|+|+|+++||+||||+.|++||+||+||||+.+.||+||+||+||+++|+||+|+
T Consensus 446 l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~g~Glnl~~a~~Vi~~d~~wnp~~~~Qa~gR~~R~Gq~~~v~v~~lv 525 (644)
T 1z3i_X 446 LDGTMSIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRLL 525 (644)
T ss_dssp ECSSCCHHHHHHHHHHHHSTTCCCCEEEEEGGGSCTTCCCTTEEEEEECSCCSSHHHHHHHHTTSSSTTCCSCEEEEEEE
T ss_pred EECCCCHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCCEEEEEEE
T ss_conf 83999999999999996399999679998445566784652389899979999813799998840322898726999988
Q ss_pred ECCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCC
Q ss_conf 58999999999999999999976268889986678899999864239
Q 001841 961 IRDTVEDRILKLQDDKRKMVASAFGEDQGGGTASRLTVEDLRYLFMV 1007 (1007)
Q Consensus 961 ~~dTiEe~Il~lq~~K~~li~~~~g~~~~~~~~~~l~~edl~~lf~~ 1007 (1007)
+++|+||+|+++|..|..+++.+++++.. ....++.+||+.||.+
T Consensus 526 ~~~tiEe~i~~~~~~K~~l~~~v~~~~~~--~~~~~~~~~l~~Lf~~ 570 (644)
T 1z3i_X 526 STGTIEEKILQRQAHKKALSSCVVDEEQD--VERHFSLGELRELFSL 570 (644)
T ss_dssp ETTSHHHHHHHHHHHHHHTSCCCCSCSSS--CCCSSCHHHHHHHTCC
T ss_pred ECCCHHHHHHHHHHHHHHHHHHHHCCCCH--HHCCCCHHHHHHHHCC
T ss_conf 79889999999999999999998568605--4337899999998678
No 3
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=1.00 E-value=1 Score=624.82 Aligned_cols=464 Identities=33% Similarity=0.530 Sum_probs=400.3
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHCCCCCCCHHHHCCCCCCCCCCCCCCC
Q ss_conf 98844456725789999999983204777567612238898168999999985101123310212034321236689888
Q 001841 267 PDGLLSVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLDDDD 346 (1007)
Q Consensus 267 p~~~~~~~LrpyQ~~av~wml~~e~~~~~~~GGILADdmGLGKTiqaIali~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 346 (1007)
|.+ +...|+|||++++.||...... ..||||||+||+|||+++++++......
T Consensus 31 p~~-~~~~L~~~Q~~~v~~l~~~~~~---~~~~ilad~~GlGKT~~ai~~i~~~~~~----------------------- 83 (500)
T 1z63_A 31 PYN-IKANLRPYQIKGFSWMRFMNKL---GFGICLADDMGLGKTLQTIAVFSDAKKE----------------------- 83 (500)
T ss_dssp CCS-CSSCCCHHHHHHHHHHHHHHHT---TCCEEECCCTTSCHHHHHHHHHHHHHHT-----------------------
T ss_pred CHH-HHCCCHHHHHHHHHHHHHHHHC---CCCEEEEECCCCCHHHHHHHHHHHHHHC-----------------------
T ss_conf 833-2003369999999999997417---9988998089973899999999988755-----------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCC
Q ss_conf 88876743222369889999987666654434788899964999182359999999997769999818999828998889
Q 001841 347 DNGNAGLDKVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKD 426 (1007)
Q Consensus 347 ~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tLIV~P~sLl~qW~~Ei~k~~~~~~~l~vlv~~G~~r~~~ 426 (1007)
.+.+++|||||.+|+.||.+||.+|++ .+++.+++|....
T Consensus 84 -----------------------------------~~~~~~LIv~P~~l~~qw~~e~~~~~~---~~~v~~~~g~~~~-- 123 (500)
T 1z63_A 84 -----------------------------------NELTPSLVICPLSVLKNWEEELSKFAP---HLRFAVFHEDRSK-- 123 (500)
T ss_dssp -----------------------------------TCCSSEEEEECSTTHHHHHHHHHHHCT---TSCEEECSSSTTS--
T ss_pred -----------------------------------CCCCCEEEECCHHHHHHHHHHHHHHCC---CCEEEEEECCCHH--
T ss_conf -----------------------------------899978999038999999999999779---9559997267021--
Q ss_pred CCCCCCCCEEEECHHHHHCCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 10127875999650233101799999855666320276567761122322210122111125678888877776558888
Q 001841 427 PVELAKYDVVLTTYSIVTNEVPKQPSVDEEEADEKNGETYGLSSEFSVNKKRKKISNVSKRGKKGKKGNVNSSIDYGCGP 506 (1007)
Q Consensus 427 ~~~l~~~dVVItTy~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~k~~~~~~kk~k~~~~~~~~~~~~~~~~~ 506 (1007)
.....++|+|+||+.+.+.. .
T Consensus 124 -~~~~~~~ivi~t~~~l~~~~----------------------------------------------------------~ 144 (500)
T 1z63_A 124 -IKLEDYDIILTTYAVLLRDT----------------------------------------------------------R 144 (500)
T ss_dssp -CCGGGSSEEEEEHHHHTTCH----------------------------------------------------------H
T ss_pred -CCCCCCCEEEEEHHHHHCCC----------------------------------------------------------H
T ss_conf -00357768996379972630----------------------------------------------------------2
Q ss_pred CCCCCEEEEEECCCCCCCCCCCHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCC
Q ss_conf 63210209999157545882117999998611584799955588799557998999880698311699997703676668
Q 001841 507 LAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRFLKYDPYAVYKSFYSTIKIPISRN 586 (1007)
Q Consensus 507 L~~~~w~rVIiDEAH~iKN~~t~~~ka~~~L~a~~rwlLTGTPi~N~l~DL~sll~fL~~~~~~~~~~F~~~~~~pi~~~ 586 (1007)
+....|++||+||||.++|..++.++++..+.+.++|+|||||++|++.|||+++.||.|+++..+..|...|..|+...
T Consensus 145 l~~~~~~~vIvDEaH~~kn~~~~~~~~l~~l~~~~~l~LTaTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~ 224 (500)
T 1z63_A 145 LKEVEWKYIVIDEAQNIKNPQTKIFKAVKELKSKYRIALTGTPIENKVDDLWSIMTFLNPGLLGSYSEFKSKFATPIKKG 224 (500)
T ss_dssp HHTCCEEEEEEETGGGGSCTTSHHHHHHHTSCEEEEEEECSSCSTTCHHHHHHHHHHHSTTTTCCHHHHHTTTHHHHHTT
T ss_pred HCCCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCC
T ss_conf 11787287998084101787689999999600471899746777799999999999858775799899999852511146
Q ss_pred CHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHH
Q ss_conf 56679999999988652201375457976436999648999932999999999999999999999996208775108999
Q 001841 587 SLHGYKKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANI 666 (1007)
Q Consensus 587 ~~~~~~~L~~~L~~~~lRRtk~~v~~g~~i~~LP~k~~~~v~v~ls~~er~~Y~~l~~~~~~~~~~~~~~g~~~~~~~~i 666 (1007)
.......++.++.++++||++.+.. ....||++.+..+.+++++.|+.+|+.+.......+ ...........+
T Consensus 225 ~~~~~~~l~~~l~~~~lrr~k~~~~---~~~~lp~~~~~~v~~~l~~~~~~~y~~~~~~~~~~~----~~~~~~~~~~~~ 297 (500)
T 1z63_A 225 DNMAKEELKAIISPFILRRTKYDKA---IINDLPDKIETNVYCNLTPEQAAMYKAEVENLFNNI----DSVTGIKRKGMI 297 (500)
T ss_dssp CHHHHHHHHHHHTTTEECCCTTCHH---HHTTSCSEEEEEEEECCCHHHHHHHHHHHHHHTTTT----TTCCTHHHHHHH
T ss_pred CHHHHHHHHHHHHHHEEEECCCCCC---HHHCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHH----HHHHCCCCHHHH
T ss_conf 6889999999976674550255424---112299975899981899999999999999999999----864232106799
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 99999977520731001123445423011888611993799999961011444233458999995003469522023343
Q 001841 667 LLMLLRLRQACDHPLLVKEYDFDSVGKISGEMAKRLPRDMLIDLLSRLETSSAICCVCSDPPEDSVVTMCGHVFCYQCAS 746 (1007)
Q Consensus 667 l~~L~rLRq~c~hP~L~~~~~~~~~~~~~~e~~~~~~~~~~~~~l~~le~~~~~C~iC~d~~~~~vit~C~H~~c~~ci~ 746 (1007)
+..+++||++|+||.++....
T Consensus 298 ~~~l~~lr~~~~~p~l~~~~~----------------------------------------------------------- 318 (500)
T 1z63_A 298 LSTLLKLKQIVDHPALLKGGE----------------------------------------------------------- 318 (500)
T ss_dssp HHHHHHHHHHTTCTHHHHCSC-----------------------------------------------------------
T ss_pred HHHHHHHHHHHCCHHHHCCCC-----------------------------------------------------------
T ss_conf 999999998817998843852-----------------------------------------------------------
Q ss_pred HHCCCCCCCCCCCCHHHCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 21028999999840010025650101011133557999999999943455787676442046999999998631104655
Q 001841 747 EYITGDDNMCPAPRCKEQLGADVVFSKTTLKNCVSDDGGGSPTDSPFADKSGILDNEYISSKIRTVLDILHTQCELNTKC 826 (1007)
Q Consensus 747 ~~~~~~~~~cp~~~cr~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SsKl~~l~~lL~~~~~~~~~~ 826 (1007)
.....++|+..+.+++.+....+.
T Consensus 319 ------------------------------------------------------~~~~~s~K~~~l~~~l~~~~~~~~-- 342 (500)
T 1z63_A 319 ------------------------------------------------------QSVRRSGKMIRTMEIIEEALDEGD-- 342 (500)
T ss_dssp ------------------------------------------------------CCSTTCHHHHHHHHHHHHHHTTTC--
T ss_pred ------------------------------------------------------CHHHCCHHHHHHHHHHHHHHCCCC--
T ss_conf ------------------------------------------------------011115529999999999872688--
Q ss_pred CHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHC-CCEEEEECCCCCHHHHHHHHHHHCCCCCCC
Q ss_conf 2466520026889876556899889972999905256899999997535-972897328889689999999550595433
Q 001841 827 SIVEIHDLAGSNGSSAVHSKSPIEGPIKSIVFSQWTRMLDLVENSLNQH-CIQYRRLDGTMSLPARDRAVKDFNTDREIT 905 (1007)
Q Consensus 827 ~~~~~~~~~~~~~~~~~~~~~~~~~~~KvIIFsqft~~ld~L~~~L~~~-gi~~~~i~Gs~s~~eR~~~I~~F~~~~~~~ 905 (1007)
|+||||+|+.+++.++..|... |+.+..++|+++.++|+++++.|++++++.
T Consensus 343 ---------------------------k~lvF~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~R~~~~~~F~~~~~~~ 395 (500)
T 1z63_A 343 ---------------------------KIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVK 395 (500)
T ss_dssp ---------------------------CEEEECSCHHHHHHHHHHHHHHHTCCCCEEETTSCHHHHHHHHHHHHHCTTCC
T ss_pred ---------------------------CEEEEEEHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHCCCCCCC
T ss_conf ---------------------------68999721889999999998853887699979999999999999960899987
Q ss_pred EEEEECCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHCCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 66630357655554566798999658999792679967210139824399999995899999999999999999997626
Q 001841 906 VMLMSLKAGNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVEDRILKLQDDKRKMVASAFG 985 (1007)
Q Consensus 906 VLLiS~kagg~GLNL~~A~~VI~~Dp~WNp~~e~QAigRv~RiGQ~k~V~V~~li~~dTiEe~Il~lq~~K~~li~~~~g 985 (1007)
|+|+|++++++|+||+.|++||+||+||||..+.||+||++|+||+++|+||+|++++|+|++|++++..|..+++.+++
T Consensus 396 vil~st~~~~~Glnl~~~~~vi~~d~~~~~~~~~Q~~gR~~R~Gq~~~v~v~~lv~~~tiee~i~~~~~~K~~l~~~~~~ 475 (500)
T 1z63_A 396 FIVLSVKAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVGTLEEKIDQLLAFKRSLFKDIIS 475 (500)
T ss_dssp CCEEECCCC-CCCCCTTCSEEEESSCCSCC---CHHHHTTTTTTTTSCEEEEEEEETTSHHHHTHHHHTTCSSSSSSGGG
T ss_pred EEEEECCCCCCCCCHHHCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 79995333557774455888999589989545899999888738987069999774898999999999999999999860
Q ss_pred CCCCCCCCCCCCHHHHHHHHCC
Q ss_conf 8889986678899999864239
Q 001841 986 EDQGGGTASRLTVEDLRYLFMV 1007 (1007)
Q Consensus 986 ~~~~~~~~~~l~~edl~~lf~~ 1007 (1007)
++. .....++.+||+.||++
T Consensus 476 ~~~--~~~~~~~~~~l~~l~~~ 495 (500)
T 1z63_A 476 SGD--SWITELSTEELRKVIEL 495 (500)
T ss_dssp STT--GGGGSSCHHHHHHHHSC
T ss_pred CCC--CHHCCCCHHHHHHHHCC
T ss_conf 685--02115999999999646
No 4
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=1.00 E-value=1 Score=458.82 Aligned_cols=426 Identities=18% Similarity=0.238 Sum_probs=312.6
Q ss_pred CCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHCCCCCCCHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf 44567257899999999832047775676122388981689999999851011233102120343212366898888887
Q 001841 271 LSVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLDDDDDNGN 350 (1007)
Q Consensus 271 ~~~~LrpyQ~~av~wml~~e~~~~~~~GGILADdmGLGKTiqaIali~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 350 (1007)
..+.|+|||+.++.|++... ..|+||||+||+|||+++++++......
T Consensus 150 ~~~~LrpyQ~eav~~~l~~~-----~~~~LLad~tGlGKTi~Ai~~i~~l~~~--------------------------- 197 (968)
T 3dmq_A 150 QRTSLIPHQLNIAHDVGRRH-----APRVLLADEVGLGKTIEAGMILHQQLLS--------------------------- 197 (968)
T ss_dssp CSSCCCHHHHHHHHHHHHSS-----SCEEEECCCTTSCHHHHHHHHHHHHHHT---------------------------
T ss_pred CCCCCCHHHHHHHHHHHHHC-----CCCEEEECCCCCCHHHHHHHHHHHHHHH---------------------------
T ss_conf 89997099999999999705-----8988987899975999999999999981---------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCC----CC
Q ss_conf 67432223698899999876666544347888999649991823599999999977699998189998289988----89
Q 001841 351 AGLDKVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRT----KD 426 (1007)
Q Consensus 351 ~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tLIV~P~sLl~qW~~Ei~k~~~~~~~l~vlv~~G~~r~----~~ 426 (1007)
...+++|||||.+|+.||..|+.++++ +.+.++++.... ..
T Consensus 198 -------------------------------g~~~rvLIVvP~sLl~Qw~~E~~~~f~----l~v~v~~~~~~~~~~~~~ 242 (968)
T 3dmq_A 198 -------------------------------GAAERVLIIVPETLQHQWLVEMLRRFN----LRFALFDDERYAEAQHDA 242 (968)
T ss_dssp -------------------------------SSCCCEEEECCTTTHHHHHHHHHHHSC----CCCEECCHHHHHHHHHTT
T ss_pred -------------------------------CCCCEEEEEECHHHHHHHHHHHHHHHC----CCEEEECCCHHHHHHHHC
T ss_conf -------------------------------899829999578889999999999869----987998062055543200
Q ss_pred CCCCCCCCEEEECHHHHHCCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 10127875999650233101799999855666320276567761122322210122111125678888877776558888
Q 001841 427 PVELAKYDVVLTTYSIVTNEVPKQPSVDEEEADEKNGETYGLSSEFSVNKKRKKISNVSKRGKKGKKGNVNSSIDYGCGP 506 (1007)
Q Consensus 427 ~~~l~~~dVVItTy~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~k~~~~~~kk~k~~~~~~~~~~~~~~~~~ 506 (1007)
...+..++|+|+||+.+.+.... ...
T Consensus 243 ~~~~~~~dIvI~T~~~L~~~~~~------------------------------------------------------~~~ 268 (968)
T 3dmq_A 243 YNPFDTEQLVICSLDFARRSKQR------------------------------------------------------LEH 268 (968)
T ss_dssp CSSSTTCSEEEECHHHHHTSTTT------------------------------------------------------THH
T ss_pred CCCCCCCCEEEECHHHHHHCHHH------------------------------------------------------HHH
T ss_conf 36445689899768998648788------------------------------------------------------887
Q ss_pred CCCCCEEEEEECCCCCCCCCCCHH---HHHHHHC--CCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCC
Q ss_conf 632102099991575458821179---9999861--15847999555887995579989998806983116999977036
Q 001841 507 LAKVGWFRVVLDEAQTIKNHRTQV---ARACCSL--RAKRRWCLSGTPIQNSIDDLYSYFRFLKYDPYAVYKSFYSTIKI 581 (1007)
Q Consensus 507 L~~~~w~rVIiDEAH~iKN~~t~~---~ka~~~L--~a~~rwlLTGTPi~N~l~DL~sll~fL~~~~~~~~~~F~~~~~~ 581 (1007)
+....|++||+||||.++|..+.. ++++..+ ++.++|+|||||++|++.|+|++++||.|+.|..+..|...+..
T Consensus 269 l~~~~~dlVIvDEAH~~kn~~~~~s~~~~~l~~L~~~~~~~L~LTATPi~n~~~el~sll~~L~p~~~~~~~~f~~~~~~ 348 (968)
T 3dmq_A 269 LCEAEWDLLVVDEAHHLVWSEDAPSREYQAIEQLAEHVPGVLLLTATPEQLGMESHFARLRLLDPNRFHDFAQFVEEQKN 348 (968)
T ss_dssp HHTSCCCEEEECCSSCCCCBTTBCCHHHHHHHHHHTTCSSEEESCSSCSSSCSSCTHHHHHHHCTTTCSSTHHHHHHHHH
T ss_pred HHHCCCCEEEEHHHHHHCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHH
T ss_conf 64158778974446762588875429999999986257858999768766987999999982593011898999999985
Q ss_pred CC---------------CC---------------------------C-CHHHHHHHHHHH-----HHHHHHCCCCCCCCC
Q ss_conf 76---------------66---------------------------8-566799999999-----886522013754579
Q 001841 582 PI---------------SR---------------------------N-SLHGYKKLQAVL-----RAIMLRRTKGTFIDG 613 (1007)
Q Consensus 582 pi---------------~~---------------------------~-~~~~~~~L~~~L-----~~~~lRRtk~~v~~g 613 (1007)
.. .. . .......+..++ ..+++|+++..+
T Consensus 349 ~~~i~~~~~~l~~~~~~~~~~~~~L~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~i~~lld~~g~~~~l~r~~r~~i--- 425 (968)
T 3dmq_A 349 YCPVADAVAMLLAGNKLSNDELNMLGEMIGEQDIEPLLQAANSDSEDAQSARQELVSMLMDRHGTSRVLFRNTRNGV--- 425 (968)
T ss_dssp HHHHHHHHHTTTTSCCCCGGGTTSSTTTTCTTCSSTTGGGTCCCSSCSTTTHHHHHHHHGGGCTTTTTEECCCTTTC---
T ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH---
T ss_conf 78899999987426789988999999884203367887503622233379999999999986173326563226554---
Q ss_pred CCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 76436999648999932999999999999999999999996208775108999999999775207310011234454230
Q 001841 614 QPIINLPPKTISLTKVDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANILLMLLRLRQACDHPLLVKEYDFDSVGK 693 (1007)
Q Consensus 614 ~~i~~LP~k~~~~v~v~ls~~er~~Y~~l~~~~~~~~~~~~~~g~~~~~~~~il~~L~rLRq~c~hP~L~~~~~~~~~~~ 693 (1007)
..+|++....+.+++++.++..|...... ........ ....+.+|.....
T Consensus 426 ---~~~p~r~~~~~~l~~~~~~~~~~~~~~~~---------~~~~~~~~----------~~~~~l~pe~~~~-------- 475 (968)
T 3dmq_A 426 ---KGFPKRELHTIKLPLPTQYQTAIKVSGIM---------GARKSAED----------RARDMLYPERIYQ-------- 475 (968)
T ss_dssp ---CCCCCCCCCEEEECCCHHHHHHHHHHHHT---------TCCSSGGG----------GTHHHHCSGGGTT--------
T ss_pred ---CCCCHHHEEEEECCCCHHHHHHHHHHHHH---------HHHHHHHH----------HHHHHCCHHHHHH--------
T ss_conf ---55671115752368999999999987543---------02126677----------7764108598998--------
Q ss_pred CHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCHHHCCCCCCEECC
Q ss_conf 11888611993799999961011444233458999995003469522023343210289999998400100256501010
Q 001841 694 ISGEMAKRLPRDMLIDLLSRLETSSAICCVCSDPPEDSVVTMCGHVFCYQCASEYITGDDNMCPAPRCKEQLGADVVFSK 773 (1007)
Q Consensus 694 ~~~e~~~~~~~~~~~~~l~~le~~~~~C~iC~d~~~~~vit~C~H~~c~~ci~~~~~~~~~~cp~~~cr~~l~~~~~~~~ 773 (1007)
T Consensus 476 -------------------------------------------------------------------------------- 475 (968)
T 3dmq_A 476 -------------------------------------------------------------------------------- 475 (968)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf 11133557999999999943455787676442046999999998631104655246652002688987655689988997
Q 001841 774 TTLKNCVSDDGGGSPTDSPFADKSGILDNEYISSKIRTVLDILHTQCELNTKCSIVEIHDLAGSNGSSAVHSKSPIEGPI 853 (1007)
Q Consensus 774 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SsKl~~l~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 853 (1007)
.... ........+.|+..+.+++... .+ .
T Consensus 476 -----~l~~---------------~~~~~~~~~~K~~~L~~ll~~~--~~-----------------------------~ 504 (968)
T 3dmq_A 476 -----EFEG---------------DNATWWNFDPRVEWLMGYLTSH--RS-----------------------------Q 504 (968)
T ss_dssp -----TTTS---------------SSCCTTTTSHHHHHHHHHHHHT--SS-----------------------------S
T ss_pred -----HHHH---------------HHHCCCCCCHHHHHHHHHHHHC--CC-----------------------------C
T ss_conf -----7643---------------3313568567999999999837--99-----------------------------9
Q ss_pred EEEEEECCHHHHHHHHHHHHH-CCCEEEEECCCCCHHHHHHHHHHHCCCC-CCCEEEEECCCCCCCCCCCCCCEEEEECC
Q ss_conf 299990525689999999753-5972897328889689999999550595-43366630357655554566798999658
Q 001841 854 KSIVFSQWTRMLDLVENSLNQ-HCIQYRRLDGTMSLPARDRAVKDFNTDR-EITVMLMSLKAGNLGLNMVAASHVILLDL 931 (1007)
Q Consensus 854 KvIIFsqft~~ld~L~~~L~~-~gi~~~~i~Gs~s~~eR~~~I~~F~~~~-~~~VLLiS~kagg~GLNL~~A~~VI~~Dp 931 (1007)
|+||||++..+++.++..|.. .|+.+..++|+|+..+|+++++.|+++. .+.||| +++++++|+|++.|++||+||+
T Consensus 505 k~iVF~~~~~~~~~l~~~L~~~~g~~~~~lhG~~~~~~R~~~l~~F~~g~~~~~vLv-aT~v~~~GlDl~~~~~VI~~d~ 583 (968)
T 3dmq_A 505 KVLVICAKAATALQLEQVLREREGIRAAVFHEGMSIIERDRAAAWFAEEDTGAQVLL-CSEIGSEGRNFQFASHMVMFDL 583 (968)
T ss_dssp CCCEECSSTHHHHHHHHHHHTTTCCCEEEECTTSCTTHHHHHHHHHHSTTSSCEEEE-CSCCTTCSSCCTTCCEEECSSC
T ss_pred CEEEEECCHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCCCCCEEE-ECCHHHCCCCCCCCCEEEEECC
T ss_conf 789996959999999999998749838998499999999999999747997630898-5334316888556767999569
Q ss_pred CCCCCHHHHHHHHHHCCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHH
Q ss_conf 999792679967210139824399999995899999999999999999997
Q 001841 932 WWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVEDRILKLQDDKRKMVAS 982 (1007)
Q Consensus 932 ~WNp~~e~QAigRv~RiGQ~k~V~V~~li~~dTiEe~Il~lq~~K~~li~~ 982 (1007)
||||..+.|++||++|+||++.|+||+++.++|+|++|++.+.+|.+++..
T Consensus 584 p~~~~~~~Q~~GR~~R~Gq~~~v~v~~~~~~~t~ee~i~~~~~~k~~~~~~ 634 (968)
T 3dmq_A 584 PFNPDLLEQRIGRLDRIGQAHDIQIHVPYLEKTAQSVLVRWYHEGLDAFEH 634 (968)
T ss_dssp CSSHHHHHHHHHTTSCSSSCSCCEEEEEEETTSHHHHHHHHHHHTTCCSSS
T ss_pred CCCHHHHHHHHHCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHCCCCEEC
T ss_conf 998789998701143079985089998057771999999999867876353
No 5
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=1.00 E-value=1 Score=375.13 Aligned_cols=465 Identities=16% Similarity=0.170 Sum_probs=283.2
Q ss_pred CCCCCHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf 45672578999999998320477756761223889816899999998510112331021203432123668988888876
Q 001841 272 SVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLDDDDDNGNA 351 (1007)
Q Consensus 272 ~~~LrpyQ~~av~wml~~e~~~~~~~GGILADdmGLGKTiqaIali~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 351 (1007)
.++|+|||++++.|++.. ++||+++||+|||+++++++.....
T Consensus 7 ~~~l~~~Q~~~i~~~~~~--------~~ll~~~tG~GKT~~~~~~~~~~~~----------------------------- 49 (494)
T 1wp9_A 7 LIQPRIYQEVIYAKCKET--------NCLIVLPTGLGKTLIAMMIAEYRLT----------------------------- 49 (494)
T ss_dssp HHCCCHHHHHHHHHGGGS--------CEEEECCTTSCHHHHHHHHHHHHHH-----------------------------
T ss_pred CCCCCHHHHHHHHHHHHC--------CEEEECCCCCCHHHHHHHHHHHHHH-----------------------------
T ss_conf 878639999999999619--------9899918998789999999999986-----------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCH-HHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCC-CC
Q ss_conf 743222369889999987666654434788899964999182-3599999999977699998189998289988891-01
Q 001841 352 GLDKVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPA-SVLRQWARELEDKVPDKAALSVLIYHGGSRTKDP-VE 429 (1007)
Q Consensus 352 ~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tLIV~P~-sLl~qW~~Ei~k~~~~~~~l~vlv~~G~~r~~~~-~~ 429 (1007)
.+.+++|||||. +|+.||.+|+.+++... ..++.+++|....... ..
T Consensus 50 ------------------------------~~~~~~liv~P~~~L~~q~~~~~~~~~~~~-~~~v~~~~g~~~~~~~~~~ 98 (494)
T 1wp9_A 50 ------------------------------KYGGKVLMLAPTKPLVLQHAESFRRLFNLP-PEKIVALTGEKSPEERSKA 98 (494)
T ss_dssp ------------------------------HSCSCEEEECSSHHHHHHHHHHHHHHBCSC-GGGEEEECSCSCHHHHHHH
T ss_pred ------------------------------CCCCEEEEEECCHHHHHHHHHHHHHHHCCC-HHHEEEEECCCCHHHHHHH
T ss_conf ------------------------------479859999788899999999999874756-1116876077533556653
Q ss_pred CCCCCEEEECHHHHHCCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 27875999650233101799999855666320276567761122322210122111125678888877776558888632
Q 001841 430 LAKYDVVLTTYSIVTNEVPKQPSVDEEEADEKNGETYGLSSEFSVNKKRKKISNVSKRGKKGKKGNVNSSIDYGCGPLAK 509 (1007)
Q Consensus 430 l~~~dVVItTy~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~k~~~~~~kk~k~~~~~~~~~~~~~~~~~L~~ 509 (1007)
+..++|+|+||+.+.+.... ..+..
T Consensus 99 ~~~~~ivv~T~~~l~~~~~~-------------------------------------------------------~~~~~ 123 (494)
T 1wp9_A 99 WARAKVIVATPQTIENDLLA-------------------------------------------------------GRISL 123 (494)
T ss_dssp HHHCSEEEECHHHHHHHHHT-------------------------------------------------------TSCCT
T ss_pred CCCCCEEEECHHHHHHHHHC-------------------------------------------------------CCCCH
T ss_conf 35798999639999999860-------------------------------------------------------87156
Q ss_pred CCEEEEEECCCCCCCCCCCHHH--HHH-HHCCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCCHHHHHHH---HCCCCC
Q ss_conf 1020999915754588211799--999-8611584799955588799557998999880698311699997---703676
Q 001841 510 VGWFRVVLDEAQTIKNHRTQVA--RAC-CSLRAKRRWCLSGTPIQNSIDDLYSYFRFLKYDPYAVYKSFYS---TIKIPI 583 (1007)
Q Consensus 510 ~~w~rVIiDEAH~iKN~~t~~~--ka~-~~L~a~~rwlLTGTPi~N~l~DL~sll~fL~~~~~~~~~~F~~---~~~~pi 583 (1007)
..|.+||+||||.+++...... +.+ ...+..++|+|||||. |+..+++.++.++..........+.. .+..+.
T Consensus 124 ~~~~~vIiDEaH~~~~~~~~~~~~~~~~~~~~~~~~l~lTaTp~-~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 202 (494)
T 1wp9_A 124 EDVSLIVFDEAHRAVGNYAYVFIAREYKRQAKNPLVIGLTASPG-STPEKIMEVINNLGIEHIEYRSENSPDVRPYVKGI 202 (494)
T ss_dssp TSCSEEEEETGGGCSTTCHHHHHHHHHHHHCSSCCEEEEESCSC-SSHHHHHHHHHHTTCCEEEECCTTSTTTGGGCCCC
T ss_pred HHCEEEEEECCCCCCCCCCHHHHHHHHHHCCCCCEEEEEECCCC-CCCHHHHHHHHHCCHHEEECCCCCCHHHHHHCCCC
T ss_conf 54108999787566888819999999973288776999956998-88578999998507000502678758788752787
Q ss_pred -----CCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf -----668566799999999886522013754579764369996489999329999999999999999999999962087
Q 001841 584 -----SRNSLHGYKKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEWAFYKKLESDSLKKFKAFADAGT 658 (1007)
Q Consensus 584 -----~~~~~~~~~~L~~~L~~~~lRRtk~~v~~g~~i~~LP~k~~~~v~v~ls~~er~~Y~~l~~~~~~~~~~~~~~g~ 658 (1007)
..........+...+..++.++.+.....+ -+++.. ..++..+.. .+.. .+......+.
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~-----~~~~~~~~~---~~~~----~~~~~~~~~~ 266 (494)
T 1wp9_A 203 RFEWVRVDLPEIYKEVRKLLREMLRDALKPLAETG----LLESSS-----PDIPKKEVL---RAGQ----IINEEMAKGN 266 (494)
T ss_dssp CEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHT----SSSCCC-----TTSCHHHHH---HHHH----HHHHHHTTTC
T ss_pred CEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHC----CCCCCC-----CCCCHHHHH---HHHH----HHHHHHHCCC
T ss_conf 42689568858899999989899999999999735----565457-----773355789---9999----9998753356
Q ss_pred -CCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf -7510899999999977520731001123445423011888611993799999961011444233458999995003469
Q 001841 659 -VNQNYANILLMLLRLRQACDHPLLVKEYDFDSVGKISGEMAKRLPRDMLIDLLSRLETSSAICCVCSDPPEDSVVTMCG 737 (1007)
Q Consensus 659 -~~~~~~~il~~L~rLRq~c~hP~L~~~~~~~~~~~~~~e~~~~~~~~~~~~~l~~le~~~~~C~iC~d~~~~~vit~C~ 737 (1007)
........+..+..+........ ..........+..+... |....... ..
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~l~~~------~~~~~~~~----~~ 317 (494)
T 1wp9_A 267 HDLRGLLLYHAMALKLHHAIELLE-------------------TQGLSALRAYIKKLYEE------AKAGSTKA----SK 317 (494)
T ss_dssp CSTTTHHHHHHHHHHHHHHHHHHH-------------------HTCHHHHHHHHHHHHHH------HHTTCCHH----HH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHH-------------------HHCHHHHHHHHHHHHHH------HCCCCCHH----HH
T ss_conf 311347999988888999999998-------------------52579999999999875------22321145----56
Q ss_pred CCCCHHHHHHHCCCCCCCCCCCCHHHCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 52202334321028999999840010025650101011133557999999999943455787676442046999999998
Q 001841 738 HVFCYQCASEYITGDDNMCPAPRCKEQLGADVVFSKTTLKNCVSDDGGGSPTDSPFADKSGILDNEYISSKIRTVLDILH 817 (1007)
Q Consensus 738 H~~c~~ci~~~~~~~~~~cp~~~cr~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SsKl~~l~~lL~ 817 (1007)
..++..-+.+... .|.. .......++|+..+.++|.
T Consensus 318 ~~~~~~~~~~~~~---------~~~~-----------------------------------~~~~~~~~~k~~~l~~~l~ 353 (494)
T 1wp9_A 318 EIFSDKRMKKAIS---------LLVQ-----------------------------------AKEIGLDHPKMDKLKEIIR 353 (494)
T ss_dssp HHHTSHHHHHHHH---------HHHH-----------------------------------HHHHTCSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH---------HHHH-----------------------------------HHHCCCCCHHHHHHHHHHH
T ss_conf 6665078898999---------9998-----------------------------------8745899869999999999
Q ss_pred HHHHCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHCCCEEEEECC--------CCCHH
Q ss_conf 6311046552466520026889876556899889972999905256899999997535972897328--------88968
Q 001841 818 TQCELNTKCSIVEIHDLAGSNGSSAVHSKSPIEGPIKSIVFSQWTRMLDLVENSLNQHCIQYRRLDG--------TMSLP 889 (1007)
Q Consensus 818 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvIIFsqft~~ld~L~~~L~~~gi~~~~i~G--------s~s~~ 889 (1007)
....... +.|+||||++..+++.++..|...|+.+..++| +++..
T Consensus 354 ~~~~~~~---------------------------~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~~~~~~~~ 406 (494)
T 1wp9_A 354 EQLQRKQ---------------------------NSKIIVFTNYRETAKKIVNELVKDGIKAKRFVGQASKENDRGLSQR 406 (494)
T ss_dssp HHHHHCT---------------------------TCCEEEECSCHHHHHHHHHHHHHTTCCEEEECCSSCC-------CC
T ss_pred HHHCCCC---------------------------CCEEEEEECCHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCHH
T ss_conf 9843689---------------------------9759999766899999999999759980799656654444458999
Q ss_pred HHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHCCCCCCCEEEEEEEECCCHHHHH
Q ss_conf 99999995505954336663035765555456679899965899979267996721013982439999999589999999
Q 001841 890 ARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVEDRI 969 (1007)
Q Consensus 890 eR~~~I~~F~~~~~~~VLLiS~kagg~GLNL~~A~~VI~~Dp~WNp~~e~QAigRv~RiGQ~k~V~V~~li~~dTiEe~I 969 (1007)
+|+++++.|+++ .+.||| +|+++++|+||+.+++||++|++|||....|++||++|.|| +.+|+|+.++|+||++
T Consensus 407 ~r~~~~~~F~~~-~~~vLv-~T~~~~~Gldl~~~~~Vi~~d~~~~~~~~~Qr~GR~~R~g~---g~~~~l~~~~t~ee~~ 481 (494)
T 1wp9_A 407 EQKLILDEFARG-EFNVLV-ATSVGEEGLDVPEVDLVVFYEPVPSAIRSIQRRGRTGRHMP---GRVIILMAKGTRDEAY 481 (494)
T ss_dssp HHHHHHHHHHHT-SCSEEE-ECGGGGGGGGSTTCCEEEESSCCHHHHHHHHHHTTSCSCCC---SEEEEEEETTSHHHHH
T ss_pred HHHHHHHHHHCC-CCEEEE-ECCCCCCCCCCHHCCEEEEECCCCCHHHHHHHHHHCCCCCC---CEEEEEEECCCHHHHH
T ss_conf 999999998669-946999-88841258871437989992898878999998752257788---4699999569878999
Q ss_pred HHHHHHHHHHHH
Q ss_conf 999999999999
Q 001841 970 LKLQDDKRKMVA 981 (1007)
Q Consensus 970 l~lq~~K~~li~ 981 (1007)
+..+..|.+++.
T Consensus 482 ~~~~~~k~~~~~ 493 (494)
T 1wp9_A 482 YWSSRQKEKIMQ 493 (494)
T ss_dssp HHHCC-------
T ss_pred HHHHHHHHHHHC
T ss_conf 998887898730
No 6
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=1.00 E-value=1 Score=347.62 Aligned_cols=255 Identities=29% Similarity=0.448 Sum_probs=222.7
Q ss_pred HHHHHCCCCCCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCC
Q ss_conf 86522013754579764369996489999329999999999999999999999962087751089999999997752073
Q 001841 600 AIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANILLMLLRLRQACDH 679 (1007)
Q Consensus 600 ~~~lRRtk~~v~~g~~i~~LP~k~~~~v~v~ls~~er~~Y~~l~~~~~~~~~~~~~~g~~~~~~~~il~~L~rLRq~c~h 679 (1007)
.--+||+|+++.. +|||+.+.++.|+|+++|+++|+.+.......+ ..........+++..+++||++|+|
T Consensus 11 ~~~~rr~k~~v~~-----~LP~k~e~~v~v~ls~~Q~~~Y~~~~~~~~~~~----~~~~~~~~~~~~l~~l~~Lrq~~~h 81 (271)
T 1z5z_A 11 SSGLVPRGSHMAS-----DLPDKIETNVYCNLTPEQAAMYKAEVENLFNNI----DSVTGIKRKGMILSTLLKLKQIVDH 81 (271)
T ss_dssp ----------------------CEEEEEEECCCHHHHHHHHHHHHHHHHHT----TTCCHHHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCCCCHHHHHH-----HCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHH----HHCCCCCHHHHHHHHHHHHHHHCCC
T ss_conf 5564164877875-----199977999981899999999999999999999----7403521288999999999998489
Q ss_pred CCCCCCCCCCCCCCCHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCC
Q ss_conf 10011234454230118886119937999999610114442334589999950034695220233432102899999984
Q 001841 680 PLLVKEYDFDSVGKISGEMAKRLPRDMLIDLLSRLETSSAICCVCSDPPEDSVVTMCGHVFCYQCASEYITGDDNMCPAP 759 (1007)
Q Consensus 680 P~L~~~~~~~~~~~~~~e~~~~~~~~~~~~~l~~le~~~~~C~iC~d~~~~~vit~C~H~~c~~ci~~~~~~~~~~cp~~ 759 (1007)
|.++....
T Consensus 82 P~l~~~~~------------------------------------------------------------------------ 89 (271)
T 1z5z_A 82 PALLKGGE------------------------------------------------------------------------ 89 (271)
T ss_dssp THHHHCSC------------------------------------------------------------------------
T ss_pred HHHHCCCC------------------------------------------------------------------------
T ss_conf 98846873------------------------------------------------------------------------
Q ss_pred CHHHCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHCCCCCC
Q ss_conf 00100256501010111335579999999999434557876764420469999999986311046552466520026889
Q 001841 760 RCKEQLGADVVFSKTTLKNCVSDDGGGSPTDSPFADKSGILDNEYISSKIRTVLDILHTQCELNTKCSIVEIHDLAGSNG 839 (1007)
Q Consensus 760 ~cr~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SsKl~~l~~lL~~~~~~~~~~~~~~~~~~~~~~~ 839 (1007)
.....|+|+..+.++|.+....+.
T Consensus 90 -----------------------------------------~~~~~s~K~~~L~~ll~~~~~~~~--------------- 113 (271)
T 1z5z_A 90 -----------------------------------------QSVRRSGKMIRTMEIIEEALDEGD--------------- 113 (271)
T ss_dssp -----------------------------------------CCSTTCHHHHHHHHHHHHHHHTTC---------------
T ss_pred -----------------------------------------CCCCCCHHHHHHHHHHHHHHHCCC---------------
T ss_conf -----------------------------------------223468999999999999986799---------------
Q ss_pred CCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHC-CCEEEEECCCCCHHHHHHHHHHHCCCCCCCEEEEECCCCCCCC
Q ss_conf 876556899889972999905256899999997535-9728973288896899999995505954336663035765555
Q 001841 840 SSAVHSKSPIEGPIKSIVFSQWTRMLDLVENSLNQH-CIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGL 918 (1007)
Q Consensus 840 ~~~~~~~~~~~~~~KvIIFsqft~~ld~L~~~L~~~-gi~~~~i~Gs~s~~eR~~~I~~F~~~~~~~VLLiS~kagg~GL 918 (1007)
|+||||+|+.++++|+..|... |+.+.+++|+++..+|+++++.|++++++.|+|+|+++||+||
T Consensus 114 --------------kvlIFs~~~~~~~~l~~~L~~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~v~L~st~~~g~Gl 179 (271)
T 1z5z_A 114 --------------KIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGI 179 (271)
T ss_dssp --------------CEEEEESCHHHHHHHHHHHHHHHCSCCCEECTTSCHHHHHHHHHHHHHCTTCCEEEEECCTTCCCC
T ss_pred --------------EEEEEECCHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHCCCCCCCEEEEEHHHHCCCC
T ss_conf --------------699995519999999999987339847999799999999999998328999978997223515886
Q ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHHCCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCH
Q ss_conf 45667989996589997926799672101398243999999958999999999999999999976268889986678899
Q 001841 919 NMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVEDRILKLQDDKRKMVASAFGEDQGGGTASRLTV 998 (1007)
Q Consensus 919 NL~~A~~VI~~Dp~WNp~~e~QAigRv~RiGQ~k~V~V~~li~~dTiEe~Il~lq~~K~~li~~~~g~~~~~~~~~~l~~ 998 (1007)
||+.|++||+||+||||..+.||+||+||+||+++|+||+|++++|+||+|++++..|..+++.+++.+. .....++.
T Consensus 180 nl~~a~~VI~~d~~wnp~~~~Q~~gR~~R~Gq~~~v~v~~li~~~TiEe~i~~~~~~K~~l~~~~~~~~~--~~~~~~~~ 257 (271)
T 1z5z_A 180 NLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVGTLEEKIDQLLAFKRSLFKDIISSGD--SWITELST 257 (271)
T ss_dssp CCTTCSEEEECSCCSCTTTC--------------CCEEEEEEETTSHHHHHHHHHHHCHHHHTTGGGGTT--HHHHTSCH
T ss_pred CCCCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCC--HHHHCCCH
T ss_conf 7644899999799998518999998523238998569999854988999999999999999999971670--54323899
Q ss_pred HHHHHHHCC
Q ss_conf 999864239
Q 001841 999 EDLRYLFMV 1007 (1007)
Q Consensus 999 edl~~lf~~ 1007 (1007)
+||+.||.+
T Consensus 258 ~~l~~l~~~ 266 (271)
T 1z5z_A 258 EELRKVIEL 266 (271)
T ss_dssp HHHHHHHSC
T ss_pred HHHHHHHCC
T ss_conf 999999655
No 7
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=1.00 E-value=1 Score=334.98 Aligned_cols=378 Identities=19% Similarity=0.168 Sum_probs=262.7
Q ss_pred CCCCCHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf 45672578999999998320477756761223889816899999998510112331021203432123668988888876
Q 001841 272 SVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLDDDDDNGNA 351 (1007)
Q Consensus 272 ~~~LrpyQ~~av~wml~~e~~~~~~~GGILADdmGLGKTiqaIali~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 351 (1007)
..+|+|||.+++.+++.. ..+||+++||+|||++++.++...
T Consensus 91 ~~~l~~~Q~~ai~~i~~~-------~~~ll~~~TGsGKT~~~l~~i~~~------------------------------- 132 (472)
T 2fwr_A 91 EISLRDYQEKALERWLVD-------KRGCIVLPTGSGKTHVAMAAINEL------------------------------- 132 (472)
T ss_dssp CCCBCHHHHHHHHHHTTT-------TEEEEECCTTSCHHHHHHHHHHHH-------------------------------
T ss_pred CCCCCHHHHHHHHHHHHC-------CCEEEEECCCCCHHHHHHHHHHHC-------------------------------
T ss_conf 998688999999999965-------987999699998899999999980-------------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCH-HHHHHHHHHHHHHCCCCCCEE-EEEEECCCCCCCCCC
Q ss_conf 743222369889999987666654434788899964999182-359999999997769999818-999828998889101
Q 001841 352 GLDKVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPA-SVLRQWARELEDKVPDKAALS-VLIYHGGSRTKDPVE 429 (1007)
Q Consensus 352 ~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tLIV~P~-sLl~qW~~Ei~k~~~~~~~l~-vlv~~G~~r~~~~~~ 429 (1007)
.+++|||||. +|+.||.+++.+ + .+. +.+++|....
T Consensus 133 --------------------------------~~~~Lvl~P~~~L~~Q~~~~~~~-~----~~~~v~~~~g~~~~----- 170 (472)
T 2fwr_A 133 --------------------------------STPTLIVVPTLALAEQWKERLGI-F----GEEYVGEFSGRIKE----- 170 (472)
T ss_dssp --------------------------------CSCEEEEESSHHHHHHHHHHGGG-G----CGGGEEEBSSSCBC-----
T ss_pred --------------------------------CCCEEEEECCHHHHHHHHHHHHH-C----CCCCEEEECCCCCC-----
T ss_conf --------------------------------99999998799999999999996-7----99636998787677-----
Q ss_pred CCCCCEEEECHHHHHCCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 27875999650233101799999855666320276567761122322210122111125678888877776558888632
Q 001841 430 LAKYDVVLTTYSIVTNEVPKQPSVDEEEADEKNGETYGLSSEFSVNKKRKKISNVSKRGKKGKKGNVNSSIDYGCGPLAK 509 (1007)
Q Consensus 430 l~~~dVVItTy~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~k~~~~~~kk~k~~~~~~~~~~~~~~~~~L~~ 509 (1007)
..+|+|+||+.+..... ...
T Consensus 171 --~~~Ivv~T~~~l~~~~~----------------------------------------------------------~~~ 190 (472)
T 2fwr_A 171 --LKPLTVSTYDSAYVNAE----------------------------------------------------------KLG 190 (472)
T ss_dssp --CCSEEEEEHHHHHHTHH----------------------------------------------------------HHT
T ss_pred --CCCEEEEECHHHHHHHH----------------------------------------------------------HHC
T ss_conf --67789997689997799----------------------------------------------------------736
Q ss_pred CCEEEEEECCCCCCCCCCCHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCHH
Q ss_conf 10209999157545882117999998611584799955588799557998999880698311699997703676668566
Q 001841 510 VGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRFLKYDPYAVYKSFYSTIKIPISRNSLH 589 (1007)
Q Consensus 510 ~~w~rVIiDEAH~iKN~~t~~~ka~~~L~a~~rwlLTGTPi~N~l~DL~sll~fL~~~~~~~~~~F~~~~~~pi~~~~~~ 589 (1007)
-.|.+||+||+|.+.+.... ..+..+.+.++++|||||..+.-.+.
T Consensus 191 ~~~~liIvDEaH~~~~~~~~--~~~~~~~~~~~l~lSATp~~~~~~~~-------------------------------- 236 (472)
T 2fwr_A 191 NRFMLLIFDEVHHLPAESYV--QIAQMSIAPFRLGLTATFEREDGRHE-------------------------------- 236 (472)
T ss_dssp TTCSEEEEETGGGTTSTTTH--HHHHTCCCSEEEEEESCCCCTTSGGG--------------------------------
T ss_pred CCCCEEEEECCCCCCCHHHH--HHHHHCCCCEEEEEECCCCCCCCHHH--------------------------------
T ss_conf 87778999897578976899--99973577818999327668897789--------------------------------
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHH
Q ss_conf 79999999988652201375457976436999648999932999999999999999999999996208775108999999
Q 001841 590 GYKKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANILLM 669 (1007)
Q Consensus 590 ~~~~L~~~L~~~~lRRtk~~v~~g~~i~~LP~k~~~~v~v~ls~~er~~Y~~l~~~~~~~~~~~~~~g~~~~~~~~il~~ 669 (1007)
.+..++.+.+.++...++..+ .+++.....+.+++++.++..|..+...... +.....
T Consensus 237 ---~l~~~~~~~~~~~~~~~l~~~----~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~l~~~~----------- 294 (472)
T 2fwr_A 237 ---ILKEVVGGKVFELFPDSLAGK----HLAKYTIKRIFVPLAEDERVEYEKREKVYKQ----FLRARG----------- 294 (472)
T ss_dssp ---SHHHHTCCEEEECCHHHHTSC----CCCSEEECCEEECCCHHHHHHTTTTTHHHHS----CSSSCC-----------
T ss_pred ---HHHHHHCCEEEECCHHHHHCC----CCCCEEEEEEECCCCHHHHHHHHHHHHHHHH----HHHHCC-----------
T ss_conf ---999972985765478987067----6788189999858998999999999999999----998647-----------
Q ss_pred HHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHC
Q ss_conf 99977520731001123445423011888611993799999961011444233458999995003469522023343210
Q 001841 670 LLRLRQACDHPLLVKEYDFDSVGKISGEMAKRLPRDMLIDLLSRLETSSAICCVCSDPPEDSVVTMCGHVFCYQCASEYI 749 (1007)
Q Consensus 670 L~rLRq~c~hP~L~~~~~~~~~~~~~~e~~~~~~~~~~~~~l~~le~~~~~C~iC~d~~~~~vit~C~H~~c~~ci~~~~ 749 (1007)
+....... .. ..+..+
T Consensus 295 ------------~~~~~~~~-~~--------------------------------------~~~~~~------------- 310 (472)
T 2fwr_A 295 ------------ITLRRAED-FN--------------------------------------KIVMAS------------- 310 (472)
T ss_dssp ------------CTTTCCSS-ST--------------------------------------TTTTTT-------------
T ss_pred ------------CCCCCHHH-HH--------------------------------------HHHHHH-------------
T ss_conf ------------54224466-89--------------------------------------999872-------------
Q ss_pred CCCCCCCCCCCHHHCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHH
Q ss_conf 28999999840010025650101011133557999999999943455787676442046999999998631104655246
Q 001841 750 TGDDNMCPAPRCKEQLGADVVFSKTTLKNCVSDDGGGSPTDSPFADKSGILDNEYISSKIRTVLDILHTQCELNTKCSIV 829 (1007)
Q Consensus 750 ~~~~~~cp~~~cr~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SsKl~~l~~lL~~~~~~~~~~~~~ 829 (1007)
..++ .++..+.... . ........+.|+..+.+++... .+
T Consensus 311 ----~~~~--~~~~~~~~~~-----~----------------------~~~~~~~~~~k~~~l~~~l~~~--~~------ 349 (472)
T 2fwr_A 311 ----GYDE--RAYEALRAWE-----E----------------------ARRIAFNSKNKIRKLREILERH--RK------ 349 (472)
T ss_dssp ----CCSS--SSSTTTHHHH-----H----------------------HHHHHHSCSHHHHHHHHHHHHT--SS------
T ss_pred ----CCCH--HHHHHHHHHH-----H----------------------HHHHHHCCHHHHHHHHHHHHHC--CC------
T ss_conf ----3698--8999999999-----9----------------------9997633738999999999857--89------
Q ss_pred HHHHCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHCCCCCCCEEEE
Q ss_conf 65200268898765568998899729999052568999999975359728973288896899999995505954336663
Q 001841 830 EIHDLAGSNGSSAVHSKSPIEGPIKSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLM 909 (1007)
Q Consensus 830 ~~~~~~~~~~~~~~~~~~~~~~~~KvIIFsqft~~ld~L~~~L~~~gi~~~~i~Gs~s~~eR~~~I~~F~~~~~~~VLLi 909 (1007)
.|+||||++..+++.+...|. +..++|+++..+|+++++.|+++ ++.||+
T Consensus 350 -----------------------~k~lvF~~~~~~~~~l~~~l~-----~~~~~g~~~~~~R~~~~~~F~~g-~~~vLv- 399 (472)
T 2fwr_A 350 -----------------------DKIIIFTRHNELVYRISKVFL-----IPAITHRTSREEREEILEGFRTG-RFRAIV- 399 (472)
T ss_dssp -----------------------SCBCCBCSCHHHHHHHHHHTT-----CCBCCSSSCSHHHHTHHHHHHHS-SCSBCB-
T ss_pred -----------------------CCEEEEECCHHHHHHHHHHHC-----CCEEECCCCHHHHHHHHHHHHCC-CCCEEE-
T ss_conf -----------------------838999797999999999748-----65562899999999999998679-988899-
Q ss_pred ECCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHCCCCC-CCEEEEEEEECCCHHHHHHHHHHHHHHHH
Q ss_conf 035765555456679899965899979267996721013982-43999999958999999999999999999
Q 001841 910 SLKAGNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQT-RPVTVTRLTIRDTVEDRILKLQDDKRKMV 980 (1007)
Q Consensus 910 S~kagg~GLNL~~A~~VI~~Dp~WNp~~e~QAigRv~RiGQ~-k~V~V~~li~~dTiEe~Il~lq~~K~~li 980 (1007)
+|+++++|+|++.++.||++|++||+....|++||++|.||. +.|.||.|+.++|+|+++.++++.|++++
T Consensus 400 ~T~~~~~Gldlp~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~k~~~~i~~lv~~~t~ee~~~~~r~~~~~~a 471 (472)
T 2fwr_A 400 SSQVLDEGIDVPDANVGVIMSGSGSAREYIQRLGRILRPSKGKKEAVLYELISRGTGEVNTARRRKNAAKGA 471 (472)
T ss_dssp CSSCCCSSSCSCCBSEEEEECCSSCCHHHHHHHHHSBCCCTTTCCEEEEEEEECSCC---------------
T ss_pred ECCCHHCCCCCCCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCCEEEEEEEEECCCCHHHHHHHHHHHHCCC
T ss_conf 857051484620286899989999888999987631577799853999999819985379999998765058
No 8
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=1.00 E-value=1 Score=325.29 Aligned_cols=476 Identities=14% Similarity=0.158 Sum_probs=263.8
Q ss_pred CCCCCHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf 45672578999999998320477756761223889816899999998510112331021203432123668988888876
Q 001841 272 SVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLDDDDDNGNA 351 (1007)
Q Consensus 272 ~~~LrpyQ~~av~wml~~e~~~~~~~GGILADdmGLGKTiqaIali~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 351 (1007)
...|+|||..++.+++.. +.+|++++||+|||++++..+......
T Consensus 246 ~~~~r~~Q~~ai~~il~g-------~~~ll~a~TGsGKTl~~~~~i~~~l~~---------------------------- 290 (936)
T 4a2w_A 246 TKKARSYQIELAQPAING-------KNALICAPTGSGKTFVSILICEHHFQN---------------------------- 290 (936)
T ss_dssp --CCCHHHHHHHHHHHTT-------CCEEEECCTTSCHHHHHHHHHHTTTTT----------------------------
T ss_pred CCCCCHHHHHHHHHHHCC-------CCEEEEECCCCHHHHHHHHHHHHHHHH----------------------------
T ss_conf 898779999999999809-------989999699845999999999999973----------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCHH-HHHHHHHHHHHHCCCCCCEEEEEEECCCCCCC--CC
Q ss_conf 7432223698899999876666544347888999649991823-59999999997769999818999828998889--10
Q 001841 352 GLDKVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPAS-VLRQWARELEDKVPDKAALSVLIYHGGSRTKD--PV 428 (1007)
Q Consensus 352 ~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tLIV~P~s-Ll~qW~~Ei~k~~~~~~~l~vlv~~G~~r~~~--~~ 428 (1007)
......+++|||||.. |+.||.+++.++++.. .+++.+++|...... ..
T Consensus 291 ---------------------------~~~~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~-~~~v~~~~G~~~~~~~~~~ 342 (936)
T 4a2w_A 291 ---------------------------MPAGRKAKVVFLATKVPVYEQQKNVFKHHFERQ-GYSVQGISGENFSNVSVEK 342 (936)
T ss_dssp ---------------------------CCSSCCCCEEEECSSHHHHHHHHHHHHHHHHTT-TCCEEEECCC-----CCHH
T ss_pred ---------------------------CCCCCCCEEEEEECCHHHHHHHHHHHHHHHCCC-CCEEEEEECCCCHHHHHHH
T ss_conf ---------------------------655689859999698999999999999971216-9559999799631257897
Q ss_pred CCCCCCEEEECHHHHHCCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-
Q ss_conf 1278759996502331017999998556663202765677611223222101221111256788888777765588886-
Q 001841 429 ELAKYDVVLTTYSIVTNEVPKQPSVDEEEADEKNGETYGLSSEFSVNKKRKKISNVSKRGKKGKKGNVNSSIDYGCGPL- 507 (1007)
Q Consensus 429 ~l~~~dVVItTy~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~k~~~~~~kk~k~~~~~~~~~~~~~~~~~L- 507 (1007)
....++|+|+|++.+...... ..+
T Consensus 343 ~~~~~~IvI~Tp~~L~~~l~~-------------------------------------------------------~~~~ 367 (936)
T 4a2w_A 343 VIEDSDIIVVTPQILVNSFED-------------------------------------------------------GTLT 367 (936)
T ss_dssp HHHHCSEEEECHHHHHHHHHS-------------------------------------------------------SSCC
T ss_pred HCCCCCEEEECHHHHHHHHHC-------------------------------------------------------CCCC
T ss_conf 416999999449999999871-------------------------------------------------------7645
Q ss_pred CCCCEEEEEECCCCCCCCCCCHHHHHHHHCC--------CCCEEEEECCCCCCCHHHHHHHHH-------HHHCCCC---
Q ss_conf 3210209999157545882117999998611--------584799955588799557998999-------8806983---
Q 001841 508 AKVGWFRVVLDEAQTIKNHRTQVARACCSLR--------AKRRWCLSGTPIQNSIDDLYSYFR-------FLKYDPY--- 569 (1007)
Q Consensus 508 ~~~~w~rVIiDEAH~iKN~~t~~~ka~~~L~--------a~~rwlLTGTPi~N~l~DL~sll~-------fL~~~~~--- 569 (1007)
....|.+||+||||.+.+..+........+. ..++++|||||.+++..++...+. .|....+
T Consensus 368 ~l~~~~liViDEaH~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~LSATp~~~~~~~l~~~~~~i~~L~~~L~~~~i~~~ 447 (936)
T 4a2w_A 368 SLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTV 447 (936)
T ss_dssp CGGGCSEEEEETGGGCSTTCHHHHHHHHHHHHHHTTCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECC
T ss_pred CCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEECC
T ss_conf 33678799998731359986699999999998631378867399863885545402089999999999985497155346
Q ss_pred -CHHHHHHHHCCCCCCCC-------CH---HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEECCCHHHHHH
Q ss_conf -11699997703676668-------56---67999999998865220137545797643699964899993299999999
Q 001841 570 -AVYKSFYSTIKIPISRN-------SL---HGYKKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEWAF 638 (1007)
Q Consensus 570 -~~~~~F~~~~~~pi~~~-------~~---~~~~~L~~~L~~~~lRRtk~~v~~g~~i~~LP~k~~~~v~v~ls~~er~~ 638 (1007)
.....+...+..|.... .. ..+..+...+..++-....-. .++.. ....+... .
T Consensus 448 ~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~l~~l~~~i~~~~~~~l~~~--------~l~~~----~~~~~g~~---~ 512 (936)
T 4a2w_A 448 RENIQELQRFMNKPEIDVRLVKRRIHNPFAAIISNLMSETEALMRTIAYVD--------TLSQN----SKKDFGTQ---N 512 (936)
T ss_dssp CSSHHHHHHHSCCCCEEEEECCCCSCCHHHHHHHHHHHHHHHHHHHC------------------------CCSSH---H
T ss_pred CCCHHHHHHHCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHC----CCCCCCHH---H
T ss_conf 544899987536776237733655675799999999999999999887665--------55320----22332257---7
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCC-----CHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHCCCHHHHHHHHHH
Q ss_conf 99999999999999962087751-----0899999999977520731001123445423011888611993799999961
Q 001841 639 YKKLESDSLKKFKAFADAGTVNQ-----NYANILLMLLRLRQACDHPLLVKEYDFDSVGKISGEMAKRLPRDMLIDLLSR 713 (1007)
Q Consensus 639 Y~~l~~~~~~~~~~~~~~g~~~~-----~~~~il~~L~rLRq~c~hP~L~~~~~~~~~~~~~~e~~~~~~~~~~~~~l~~ 713 (1007)
|............ . ...... -+..+......++.. .+...+ ............+..
T Consensus 513 y~~~l~~l~k~~~-~--~~l~~~~~~~~~~~~l~~~~~~l~~~-~~al~i---------------~~~~~~~~~~~~l~~ 573 (936)
T 4a2w_A 513 YEHWIVVTQRKCR-L--LQLEDKEEESRICRALFICTEHLRKY-NDALII---------------SEDARIIDALSYLTE 573 (936)
T ss_dssp HHHHHHHHHHHHH-H--CCCSCHHHHHHHHHHHHHHHHHHHHH-HHHHHH---------------HHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-H--HCCCCCCHHHHHHHHHHHHHHHHHHH-HHHHHH---------------HCCHHHHHHHHHHHH
T ss_conf 9999999999887-7--40553210357999999999999998-888750---------------020428889999999
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCHHHCCCCCCEECCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 01144423345899999500346952202334321028999999840010025650101011133557999999999943
Q 001841 714 LETSSAICCVCSDPPEDSVVTMCGHVFCYQCASEYITGDDNMCPAPRCKEQLGADVVFSKTTLKNCVSDDGGGSPTDSPF 793 (1007)
Q Consensus 714 le~~~~~C~iC~d~~~~~vit~C~H~~c~~ci~~~~~~~~~~cp~~~cr~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 793 (1007)
+ ........ .- +.-+ .+.....-....+...
T Consensus 574 ~------------------------------~~~~~~~~--~~--~~e~-~l~~~~~~~~~~l~~~-------------- 604 (936)
T 4a2w_A 574 F------------------------------FTNVKNGP--YT--ELEQ-HLTAKFQEKEPELIAL-------------- 604 (936)
T ss_dssp H------------------------------HHHHHHTT--CC--HHHH-HHHHHHHHHHHHHHHH--------------
T ss_pred H------------------------------HHHHHHCC--CC--HHHH-HHHHHHHHHHHHHHHH--------------
T ss_conf 9------------------------------99876325--88--7899-9999899999999976--------------
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHH
Q ss_conf 45578767644204699999999863110465524665200268898765568998899729999052568999999975
Q 001841 794 ADKSGILDNEYISSKIRTVLDILHTQCELNTKCSIVEIHDLAGSNGSSAVHSKSPIEGPIKSIVFSQWTRMLDLVENSLN 873 (1007)
Q Consensus 794 ~~~~~~~~~~~~SsKl~~l~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvIIFsqft~~ld~L~~~L~ 873 (1007)
.......++|+..+.++|.+...... +.|+||||+++.+++.|...|.
T Consensus 605 -----~~~~~~~~~K~~~L~~lL~~~~~~~~---------------------------~~rvLIF~~t~~~ae~L~~~L~ 652 (936)
T 4a2w_A 605 -----SKDETNENPKLEELVCILDDAYRYNP---------------------------QTRTLLFAKTRALVSALKKCME 652 (936)
T ss_dssp -----HTSTTCCCHHHHHHHHHHHHTTTSCT---------------------------TCCEEEEESSHHHHHHHHHHHH
T ss_pred -----HHCCCCCCHHHHHHHHHHHHHHCCCC---------------------------CCEEEEEECCHHHHHHHHHHHH
T ss_conf -----40567789799999999999853589---------------------------9749999697999999999986
Q ss_pred HC------------CCEEEEECCCCCHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCEEEEECCCCCCCHHHHH
Q ss_conf 35------------972897328889689999999550595433666303576555545667989996589997926799
Q 001841 874 QH------------CIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDLWWNPTTEDQA 941 (1007)
Q Consensus 874 ~~------------gi~~~~i~Gs~s~~eR~~~I~~F~~~~~~~VLLiS~kagg~GLNL~~A~~VI~~Dp~WNp~~e~QA 941 (1007)
.. |..+..++|+|+..+|.++++.|+.++.+.||| +|+++++|||++.+++||+||+|||+....|+
T Consensus 653 ~~~~l~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~Fr~~g~~~VLV-aT~~~~eGIDlp~v~~VI~yD~p~s~~~~iQr 731 (936)
T 4a2w_A 653 ENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLI-ATSVADEGIDIVQCNLVVLYEYSGNVTKMIQV 731 (936)
T ss_dssp HCSTTSSCCCEEC----------------------------CCSEEE-EECC------CCCCSEEEEESCCSCSHHHHCC
T ss_pred HCCCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEE-EECCHHCCCCCHHCCEEEEECCCCCHHHHHHH
T ss_conf 37353666616996578765678889999999999863159815999-80726427760558989993899988999996
Q ss_pred HHHHHCCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 672101398243999999958999999999999999999976268
Q 001841 942 VDRAHRIGQTRPVTVTRLTIRDTVEDRILKLQDDKRKMVASAFGE 986 (1007)
Q Consensus 942 igRv~RiGQ~k~V~V~~li~~dTiEe~Il~lq~~K~~li~~~~g~ 986 (1007)
+|| ||.+++.++.|+.++|+|++.+ ++..|.+++..++..
T Consensus 732 ~GR----GR~~~g~vi~Li~~~t~ee~~~-~~~~ke~~~~~~i~~ 771 (936)
T 4a2w_A 732 RGR----GRAAGSKCILVTSKTEVVENEK-CNRYKEEMMNKAVEK 771 (936)
T ss_dssp -----------CCCEEEEESCHHHHHHHH-HHHHHHHHHHHHHHH
T ss_pred CCC----CCCCCCEEEEEEECCCHHHHHH-HHHHHHHHHHHHHHH
T ss_conf 487----7888877999986988999999-988999999999998
No 9
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=1.00 E-value=1 Score=316.34 Aligned_cols=472 Identities=14% Similarity=0.156 Sum_probs=265.8
Q ss_pred CCCCCHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf 45672578999999998320477756761223889816899999998510112331021203432123668988888876
Q 001841 272 SVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLDDDDDNGNA 351 (1007)
Q Consensus 272 ~~~LrpyQ~~av~wml~~e~~~~~~~GGILADdmGLGKTiqaIali~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 351 (1007)
...|+|||..++.+++.. +.+|++++||+|||++++..+......
T Consensus 246 ~~~l~~~Q~~~i~~~l~~-------~~~ll~~~TGsGKTl~~~~~i~~~l~~---------------------------- 290 (797)
T 4a2q_A 246 TKKARSYQIELAQPAING-------KNALICAPTGSGKTFVSILICEHHFQN---------------------------- 290 (797)
T ss_dssp --CCCHHHHHHHHHHHTT-------CCEEEECCTTSCHHHHHHHHHHHHHHT----------------------------
T ss_pred CCCCCHHHHHHHHHHHHC-------CCEEEEECCCCHHHHHHHHHHHHHHHH----------------------------
T ss_conf 899999999999999809-------998999699972999999999999984----------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCHH-HHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCC--C
Q ss_conf 7432223698899999876666544347888999649991823-599999999977699998189998289988891--0
Q 001841 352 GLDKVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPAS-VLRQWARELEDKVPDKAALSVLIYHGGSRTKDP--V 428 (1007)
Q Consensus 352 ~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tLIV~P~s-Ll~qW~~Ei~k~~~~~~~l~vlv~~G~~r~~~~--~ 428 (1007)
......+++|||||.. |+.||.+++.++++.. .+++..++|....... .
T Consensus 291 ---------------------------~~~~~~~~~Lvl~Pt~~L~~Q~~~~~~~~~~~~-~~~v~~~~g~~~~~~~~~~ 342 (797)
T 4a2q_A 291 ---------------------------MPAGRKAKVVFLATKVPVYEQQKNVFKHHFERQ-GYSVQGISGENFSNVSVEK 342 (797)
T ss_dssp ---------------------------CCSSCCCCEEEECSSHHHHHHHHHHHHHHHGGG-TCCEEEECCC-----CHHH
T ss_pred ---------------------------CCCCCCCEEEEEECCHHHHHHHHHHHHHHCCCC-CCEEEEEECCCCHHHHHHH
T ss_conf ---------------------------665679969999698999999999999861437-9469999699623246997
Q ss_pred CCCCCCEEEECHHHHHCCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-
Q ss_conf 1278759996502331017999998556663202765677611223222101221111256788888777765588886-
Q 001841 429 ELAKYDVVLTTYSIVTNEVPKQPSVDEEEADEKNGETYGLSSEFSVNKKRKKISNVSKRGKKGKKGNVNSSIDYGCGPL- 507 (1007)
Q Consensus 429 ~l~~~dVVItTy~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~k~~~~~~kk~k~~~~~~~~~~~~~~~~~L- 507 (1007)
....++|+|+|++.+...... ..+
T Consensus 343 ~~~~~~Ivv~Tp~~l~~~l~~-------------------------------------------------------~~~~ 367 (797)
T 4a2q_A 343 VIEDSDIIVVTPQILVNSFED-------------------------------------------------------GTLT 367 (797)
T ss_dssp HHHTCSEEEECHHHHHHHHHS-------------------------------------------------------SSCC
T ss_pred HHCCCCEEEECHHHHHHHHHH-------------------------------------------------------CCCC
T ss_conf 407999999766999999982-------------------------------------------------------6546
Q ss_pred CCCCEEEEEECCCCCCCCCCCHHHHHHHHCC--------CCCEEEEECCCCCCCHHHHHHHHH-------HHHCCCC---
Q ss_conf 3210209999157545882117999998611--------584799955588799557998999-------8806983---
Q 001841 508 AKVGWFRVVLDEAQTIKNHRTQVARACCSLR--------AKRRWCLSGTPIQNSIDDLYSYFR-------FLKYDPY--- 569 (1007)
Q Consensus 508 ~~~~w~rVIiDEAH~iKN~~t~~~ka~~~L~--------a~~rwlLTGTPi~N~l~DL~sll~-------fL~~~~~--- 569 (1007)
....|.+||+||||.+.+...........+. ..++++|||||.+++..++...+. .|....+
T Consensus 368 ~~~~~~~iViDEaH~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~lSATp~~~~~~~~~~~~~~i~~l~~~L~~~~i~~~ 447 (797)
T 4a2q_A 368 SLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTV 447 (797)
T ss_dssp CGGGCSEEEETTGGGCSTTSHHHHHHHHHHHHHHTTCCCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECC
T ss_pred CCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEECC
T ss_conf 51337789998863558876499999999997631478878599972775545522489999999999985498488545
Q ss_pred -CHHHHHHHHCCCCCCCC-------CH---HH----HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEECCCHH
Q ss_conf -11699997703676668-------56---67----99999999886522013754579764369996489999329999
Q 001841 570 -AVYKSFYSTIKIPISRN-------SL---HG----YKKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKE 634 (1007)
Q Consensus 570 -~~~~~F~~~~~~pi~~~-------~~---~~----~~~L~~~L~~~~lRRtk~~v~~g~~i~~LP~k~~~~v~v~ls~~ 634 (1007)
.....+...+..|.... .. .. ...++.+++.++- -..+ ..+| ...+...
T Consensus 448 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~----l~~l-----~~~~-------~~~~g~~ 511 (797)
T 4a2q_A 448 RENIQELQRFMNKPEIDVRLVKRRIHNPFAAIISNLMSETEALMRTIYS----VDTL-----SQNS-------KKDFGTQ 511 (797)
T ss_dssp CTTHHHHHHHSCCCCCEEEECCCCSCCHHHHHHHHHHHHHHHHHHHC----------------------------CCSSH
T ss_pred CCCHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHH----HHHH-----HHHC-------CCCCCCH
T ss_conf 4317889973588854888457777867899999999999999999875----6776-----5300-------0011405
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCC-----CHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHCCCHHHHHH
Q ss_conf 999999999999999999962087751-----089999999997752073100112344542301188861199379999
Q 001841 635 EWAFYKKLESDSLKKFKAFADAGTVNQ-----NYANILLMLLRLRQACDHPLLVKEYDFDSVGKISGEMAKRLPRDMLID 709 (1007)
Q Consensus 635 er~~Y~~l~~~~~~~~~~~~~~g~~~~-----~~~~il~~L~rLRq~c~hP~L~~~~~~~~~~~~~~e~~~~~~~~~~~~ 709 (1007)
.|............ . ...... .+..+......|+.....- .. ...........
T Consensus 512 ---~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~-~~---------------~~~~~~~~~~~ 569 (797)
T 4a2q_A 512 ---NYEHWIVVTQRKCR-L--LQLEDKEEESRICRALFICTEHLRKYNDAL-II---------------SEDARIIDALS 569 (797)
T ss_dssp ---HHHHHHHHHHHHHH-H--CCCSSHHHHHHHHHHHHHHHHHHHHHHHHH-HH---------------HHHSCHHHHHH
T ss_pred ---HHHHHHHHHHHHHH-H--HCCCCCCHHHHHHHHHHHHHHHHHHHHHHH-HH---------------HCCCCHHHHHH
T ss_conf ---67789999999877-7--403432025679999999999999999887-65---------------41325888999
Q ss_pred HHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCHHHCCCCCCEECCCCCCCCCCCCCCCCCC
Q ss_conf 99610114442334589999950034695220233432102899999984001002565010101113355799999999
Q 001841 710 LLSRLETSSAICCVCSDPPEDSVVTMCGHVFCYQCASEYITGDDNMCPAPRCKEQLGADVVFSKTTLKNCVSDDGGGSPT 789 (1007)
Q Consensus 710 ~l~~le~~~~~C~iC~d~~~~~vit~C~H~~c~~ci~~~~~~~~~~cp~~~cr~~l~~~~~~~~~~l~~~~~~~~~~~~~ 789 (1007)
.+..+ ........ ..+.-+ .+.....-....+..
T Consensus 570 ~l~~~------------------------------~~~~~~~~----~~~~~~-~l~~~~~~~~~~l~~----------- 603 (797)
T 4a2q_A 570 YLTEF------------------------------FTNVKNGP----YTELEQ-HLTAKFQEKEPELIA----------- 603 (797)
T ss_dssp HHHHH------------------------------HHHHHHTT----CCHHHH-HHHHHHHTTHHHHHH-----------
T ss_pred HHHHH------------------------------HHHHHCCC----CCHHHH-HHHHHHHHHHHHHHH-----------
T ss_conf 99999------------------------------99875047----668999-999999999999987-----------
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHH
Q ss_conf 99434557876764420469999999986311046552466520026889876556899889972999905256899999
Q 001841 790 DSPFADKSGILDNEYISSKIRTVLDILHTQCELNTKCSIVEIHDLAGSNGSSAVHSKSPIEGPIKSIVFSQWTRMLDLVE 869 (1007)
Q Consensus 790 ~~~~~~~~~~~~~~~~SsKl~~l~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvIIFsqft~~ld~L~ 869 (1007)
........++|+..+.++|.+...... +.|+||||+++.+++.|.
T Consensus 604 --------~~~~~~~~~~K~~~L~~lL~~~~~~~~---------------------------~~kvLIF~~~~~~~~~L~ 648 (797)
T 4a2q_A 604 --------LSKDETNENPKLEELVCILDDAYRYNP---------------------------QTRTLLFAKTRALVSALK 648 (797)
T ss_dssp --------HHHCTTCCCHHHHHHHHHHHHHHHHCS---------------------------SCCEEEEESSHHHHHHHH
T ss_pred --------HHCCCCCCCHHHHHHHHHHHHHHCCCC---------------------------CCEEEEEECCHHHHHHHH
T ss_conf --------630788899599999999999850589---------------------------970899979589999999
Q ss_pred HHHHHC------------CCEEEEECCCCCHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCEEEEECCCCCCCH
Q ss_conf 997535------------97289732888968999999955059543366630357655554566798999658999792
Q 001841 870 NSLNQH------------CIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDLWWNPTT 937 (1007)
Q Consensus 870 ~~L~~~------------gi~~~~i~Gs~s~~eR~~~I~~F~~~~~~~VLLiS~kagg~GLNL~~A~~VI~~Dp~WNp~~ 937 (1007)
..|... |..+..++|+|+..+|..+++.|++++.+.||| +|+++++|+|++.+++||+||+||||..
T Consensus 649 ~~L~~~~~~~~~~~~~l~G~~~~~~hg~~~~~eR~~~l~~F~~~g~~~vLV-aT~~~~~GIDlp~v~~VI~yd~p~s~~~ 727 (797)
T 4a2q_A 649 KCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLI-ATSVADEGIDIVQCNLVVLYEYSGNVTK 727 (797)
T ss_dssp HHHHTCSTTCSCCCEEC----------------------------CCSEEE-EECC-------CCCSEEEEESCCSCHHH
T ss_pred HHHHHCCCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEE-ECCCHHCCCCCHHCCEEEEECCCCCHHH
T ss_conf 999747564665521898447754578989999999999851369704999-7480544797510898999489998899
Q ss_pred HHHHHHHHHCCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 6799672101398243999999958999999999999999999976268
Q 001841 938 EDQAVDRAHRIGQTRPVTVTRLTIRDTVEDRILKLQDDKRKMVASAFGE 986 (1007)
Q Consensus 938 e~QAigRv~RiGQ~k~V~V~~li~~dTiEe~Il~lq~~K~~li~~~~g~ 986 (1007)
..|++|| ||.+++.++.|+.++++|++ ..++..|..++..++..
T Consensus 728 ~iQr~GR----GR~~~g~~i~l~~~~~~ee~-~~~~~~ke~~~~~~i~~ 771 (797)
T 4a2q_A 728 MIQVRGR----GRAAGSKCILVTSKTEVVEN-EKCNRYKEEMMNKAVEK 771 (797)
T ss_dssp HHTC-----------CCCEEEEECCHHHHHH-HHHHHHHHHHHHHHHHH
T ss_pred HHHHCCC----CCCCCCEEEEEEECCCHHHH-HHHHHHHHHHHHHHHHH
T ss_conf 9985388----87878659999728768899-99888999999999998
No 10
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=1.00 E-value=1 Score=313.42 Aligned_cols=159 Identities=17% Similarity=0.283 Sum_probs=133.9
Q ss_pred CHHHHHHHHHHHHHHHHCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHC---------
Q ss_conf 20469999999986311046552466520026889876556899889972999905256899999997535---------
Q 001841 805 ISSKIRTVLDILHTQCELNTKCSIVEIHDLAGSNGSSAVHSKSPIEGPIKSIVFSQWTRMLDLVENSLNQH--------- 875 (1007)
Q Consensus 805 ~SsKl~~l~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvIIFsqft~~ld~L~~~L~~~--------- 875 (1007)
.++|+..+.++|.+...... +.|+||||+++.+++.|...|...
T Consensus 370 ~~~K~~~L~~~l~~~~~~~~---------------------------~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~ 422 (556)
T 4a2p_A 370 ENPKLEELVCILDDAYRYNP---------------------------QTRTLLFAKTRALVSALKKCMEENPILNYIKPG 422 (556)
T ss_dssp CCHHHHHHHHHHHHHHHHCT---------------------------TCCEEEEESSHHHHHHHHHHHTTCSGGGSCCEE
T ss_pred CCHHHHHHHHHHHHHHCCCC---------------------------CCEEEEEECCHHHHHHHHHHHHHCCCCCEEEEE
T ss_conf 99699999999999834799---------------------------854999976589999999999858775500014
Q ss_pred ---CCEEEEECCCCCHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHCCCCCC
Q ss_conf ---97289732888968999999955059543366630357655554566798999658999792679967210139824
Q 001841 876 ---CIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTR 952 (1007)
Q Consensus 876 ---gi~~~~i~Gs~s~~eR~~~I~~F~~~~~~~VLLiS~kagg~GLNL~~A~~VI~~Dp~WNp~~e~QAigRv~RiGQ~k 952 (1007)
|..+..++|+++..+|+++++.|++++++.||| +|+++++|+|++.+++||+||+||||....|++|| ||.+
T Consensus 423 ~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLv-aT~~~~~GiDip~v~~VI~~d~p~s~~~~~Qr~GR----gR~~ 497 (556)
T 4a2p_A 423 VLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLI-ATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR----GRAA 497 (556)
T ss_dssp C------------------------------CCEEE-EEC-----------CEEEEETCCSCHHHHHHC-----------
T ss_pred EEECCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEE-ECCCHHCCCCCHHCCEEEEECCCCCHHHHHHHCCC----CCCC
T ss_conf 787367765565669899999999840469658999-76704337775217889991899978899886387----8788
Q ss_pred CEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHH
Q ss_conf 39999999589999999999999999999762688899866788999998
Q 001841 953 PVTVTRLTIRDTVEDRILKLQDDKRKMVASAFGEDQGGGTASRLTVEDLR 1002 (1007)
Q Consensus 953 ~V~V~~li~~dTiEe~Il~lq~~K~~li~~~~g~~~~~~~~~~l~~edl~ 1002 (1007)
++.++.|+.++++|++ ..++..|.+++..++.. ...+..+++.
T Consensus 498 ~g~~~~l~~~~~~~~~-~~~~~~k~~~~~~~i~~------i~~~~~~~~~ 540 (556)
T 4a2p_A 498 GSKCILVTSKTEVVEN-EKCNRYKEEMMNKAVEK------IQKWDEETFA 540 (556)
T ss_dssp -CCEEEEESCHHHHHH-HHHHHHHHHHHHHHHHH------HHTSCHHHHH
T ss_pred CCEEEEEEECCCHHHH-HHHHHHHHHHHHHHHHH------HHCCCHHHHH
T ss_conf 8418999827636777-77557999999999997------2068967899
Done!