BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 001842
(1007 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 128 bits (322), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 197/758 (25%), Positives = 301/758 (39%), Gaps = 136/758 (17%)
Query: 221 LSRCELSGPINQYLANLRSLSAIRLPNNYGLSSPVPEF--LANFSHLTALDLGDCQLQGK 278
LS ++G ++ + + SL+++ L N LS PV L + S L L++ L
Sbjct: 81 LSNSHINGSVSGFKCS-ASLTSLDLSRN-SLSGPVTTLTSLGSCSGLKFLNVSSNTLD-- 136
Query: 279 FPEKI---LQVPTLETLDLSDNPSLQGSLPHFPKNSSLRNLILFGTGFSGTLPNSIGNLE 335
FP K+ L++ +LE LDLS N S+ G+ N++ + L + G L+
Sbjct: 137 FPGKVSGGLKLNSLEVLDLSAN-SISGA-----------NVVGW------VLSDGCGELK 178
Query: 336 NLANVDISSCNFTGPIPTSMANLTRLFHLDFSSNHFSGPIPSLGXXXXXXXXXXXXXXXT 395
+LA IS +G + S L LD SSN+FS IP LG
Sbjct: 179 HLA---ISGNKISGDVDVSRC--VNLEFLDVSSNNFSTGIPFLGDCSA------------ 221
Query: 396 GRILFTPWEQLLNIKYVHLNYNSLSGSIPRSXXXXXXXXXXXXSTNQFENQLPEFSNESS 455
++++ ++ N LSG R+ S+NQF +P +S
Sbjct: 222 -------------LQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKS- 267
Query: 456 SVMNFLDLSGNRLEGPIPISIFFELRNLLTLDLSSNKFSRLKLASSKPRGTPNXXXXXXX 515
+ +L L+ N+ G IP + L LDLS N F + P P
Sbjct: 268 --LQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHF-----YGAVP---PFFGSCSLL 317
Query: 516 XXXXXXXXXISGEIPNWIWEFSANLVFLNLSHNLLESLQEPYFIAGVGLLDLHSNELQGS 575
SGE+P +++L + + G+ +LDL NE G
Sbjct: 318 ESLALSSNNFSGELP-------------------MDTLLK---MRGLKVLDLSFNEFSGE 355
Query: 576 IPYMSPNTSY----MDYSNNNFT--TIPADIGNFMSGTIFFSAANNSLTGVIPQSVCNAT 629
+P N S +D S+NNF+ +P N + NN TG IP ++ N +
Sbjct: 356 LPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCS 415
Query: 630 YFSVLDLSNNSLSGTIPTCLITNSSRTLGVLNLRGNSLNGTLSDRVPGICGLQILDLNGN 689
L LS N LSGTIP+ L S L L L N L G + + + L+ L L+ N
Sbjct: 416 ELVSLHLSFNYLSGTIPSSL--GSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFN 473
Query: 690 QLEGMVPKSLANCKMLQVLDLGNNNFSKKFPCWLKNASSLQVLVLRSNNFSGNISCPRNN 749
L G +P L+NC L + L NN + + P W+ +L +L L +N+FSGNI P
Sbjct: 474 DLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNI--PAEL 531
Query: 750 VSWPLLQIIDLASNKFSGRLSKKWLLTLEKMMNAETKSGSELKHLQYGFM-----GGYQF 804
L +DL +N F+G + K+ A +G +++ M G
Sbjct: 532 GDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIA-ANFIAGKRYVYIKNDGMKKECHGAGNL 590
Query: 805 YQXXXXXXXKSVEILVRKVSNIFTSIDFSSNNFEGPIPEEMGRFKSLYALNLSQNVL--- 861
+ + + R NI + + + G S+ L++S N+L
Sbjct: 591 LEFQGIRSEQLNRLSTRNPCNITSRV------YGGHTSPTFDNNGSMMFLDMSYNMLSGY 644
Query: 862 ---------------------TGSIPSSFGNLEQIESLDLSMNNLSGKIPAPLAXXXXXX 900
+GSIP G+L + LDLS N L G+IP ++
Sbjct: 645 IPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLT 704
Query: 901 XXXXXXXXXXGKIPTSTQLQSFSPTSYEGNKGLYGPPL 938
G IP Q ++F P + N GL G PL
Sbjct: 705 EIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPL 742
Score = 108 bits (270), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 163/571 (28%), Positives = 236/571 (41%), Gaps = 99/571 (17%)
Query: 182 FLQNLTELRELHLDNVDLFASGTDWCKALSFLPNLQVLSLSRCELSGPINQYLANLRSLS 241
FL + + L+ L + L D+ +A+S L++L++S + GPI L+SL
Sbjct: 215 FLGDCSALQHLDISGNKLSG---DFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQ 269
Query: 242 AIRLPNNYGLSSPVPEFLANFSHLTALDLGDCQLQGKFPEKILQVPTLETLDLSDNPSLQ 301
+ L N + +P+FL+ G C TL LDLS N
Sbjct: 270 YLSLAENK-FTGEIPDFLS----------GACD-------------TLTGLDLSGNHFYG 305
Query: 302 GSLPHFPKNSSLRNLILFGTGFSGTLP-NSIGNLENLANVDISSCNFTGPIPTSMANLTR 360
P F S L +L L FSG LP +++ + L +D+S F+G +P S+ NL+
Sbjct: 306 AVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSA 365
Query: 361 -LFHLDFSSNHFSGPI-PSLGXXXXXXXXXXXXXXX--TGRILFTPWEQLLNIKYVHLNY 416
L LD SSN+FSGPI P+L TG+I T + +HL++
Sbjct: 366 SLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPT-LSNCSELVSLHLSF 424
Query: 417 NSLSGSIPRSXXXXXXXXXXXXSTNQFENQLPEFSNESSSVMNFLDLSGNRLEGPIPISI 476
N LSG+IP S S S + L L N LEG IP +
Sbjct: 425 NYLSGTIPSSLG-------------------------SLSKLRDLKLWLNMLEGEIPQEL 459
Query: 477 FFELRNLLTLDLSSNKFSRLKLASSKPRGTPNXXXXXXXXXXXXXXXXISGEIPNWIWEF 536
+ ++ L TL L N L P G N ++GEIP WI
Sbjct: 460 MY-VKTLETLILDFND-----LTGEIPSGLSNCTNLNWISLSNNR---LTGEIPKWIGRL 510
Query: 537 SANLVFLNLSHNLLES--LQEPYFIAGVGLLDLHSNELQGSIPYMSPNTS---------- 584
NL L LS+N E + LDL++N G+IP S
Sbjct: 511 E-NLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAG 569
Query: 585 --YMDYSNNNFTTIPADIGNFMSGTIFFSAANNSLTGVIPQSVCNATY------------ 630
Y+ N+ GN + S N L+ P ++ + Y
Sbjct: 570 KRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNG 629
Query: 631 -FSVLDLSNNSLSGTIPTCLITNSSRTLGVLNLRGNSLNGTLSDRVPGICGLQILDLNGN 689
LD+S N LSG IP + S L +LNL N ++G++ D V + GL ILDL+ N
Sbjct: 630 SMMFLDMSYNMLSGYIPKEI--GSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSN 687
Query: 690 QLEGMVPKSLANCKMLQVLDLGNNNFSKKFP 720
+L+G +P++++ ML +DL NNN S P
Sbjct: 688 KLDGRIPQAMSALTMLTEIDLSNNNLSGPIP 718
Score = 50.4 bits (119), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 82/335 (24%), Positives = 133/335 (39%), Gaps = 43/335 (12%)
Query: 143 GFIQDIPIEISSLTRLVTLDLSAEPSGGFSFLEISNLSLFLQNLTELRELHLDNVDLFAS 202
GF IP +S+ + LV+L LS F++L + L +L++LR+L L L
Sbjct: 402 GFTGKIPPTLSNCSELVSLHLS------FNYLS-GTIPSSLGSLSKLRDLKLW---LNML 451
Query: 203 GTDWCKALSFLPNLQVLSLSRCELSGPINQYLANLRSLSAIRLPNNYGLSSPVPEFLANF 262
+ + L ++ L+ L L +L+G I L+N +L+ I L NN L+ +P+++
Sbjct: 452 EGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNR-LTGEIPKWIGRL 510
Query: 263 SHLTALDLGDCQLQGKFPEKILQVPTLETLDLSDNPSLQGSLPH---------------- 306
+L L L + G P ++ +L LDL+ N G++P
Sbjct: 511 ENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTN-LFNGTIPAAMFKQSGKIAANFIAG 569
Query: 307 ----FPKNSSLRNLILFGTG----FSGTLPNSIGNLENLANVDISSCNFTGPIPTSMANL 358
+ KN ++ G G F G + L +I+S + G + N
Sbjct: 570 KRYVYIKNDGMKKEC-HGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNN 628
Query: 359 TRLFHLDFSSNHFSGPIPS-LGXXXXXXXXXXXXXXXTGRILFTPWE--QLLNIKYVHLN 415
+ LD S N SG IP +G +G I P E L + + L+
Sbjct: 629 GSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSI---PDEVGDLRGLNILDLS 685
Query: 416 YNSLSGSIPRSXXXXXXXXXXXXSTNQFENQLPEF 450
N L G IP++ S N +PE
Sbjct: 686 SNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM 720
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 49/95 (51%), Gaps = 2/95 (2%)
Query: 208 KALSFLPNLQVLSLSRCELSGPINQYLANLRSLSAIRLPNNYGLSSPVPEFLANFSHLTA 267
K + +P L +L+L ++SG I + +LR L+ + L +N L +P+ ++ + LT
Sbjct: 647 KEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNK-LDGRIPQAMSALTMLTE 705
Query: 268 LDLGDCQLQGKFPEKILQVPTLETLDLSDNPSLQG 302
+DL + L G PE + Q T +NP L G
Sbjct: 706 IDLSNNNLSGPIPE-MGQFETFPPAKFLNNPGLCG 739
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 128 bits (321), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 197/758 (25%), Positives = 301/758 (39%), Gaps = 136/758 (17%)
Query: 221 LSRCELSGPINQYLANLRSLSAIRLPNNYGLSSPVPEF--LANFSHLTALDLGDCQLQGK 278
LS ++G ++ + + SL+++ L N LS PV L + S L L++ L
Sbjct: 84 LSNSHINGSVSGFKCS-ASLTSLDLSRN-SLSGPVTTLTSLGSCSGLKFLNVSSNTLD-- 139
Query: 279 FPEKI---LQVPTLETLDLSDNPSLQGSLPHFPKNSSLRNLILFGTGFSGTLPNSIGNLE 335
FP K+ L++ +LE LDLS N S+ G+ N++ + L + G L+
Sbjct: 140 FPGKVSGGLKLNSLEVLDLSAN-SISGA-----------NVVGW------VLSDGCGELK 181
Query: 336 NLANVDISSCNFTGPIPTSMANLTRLFHLDFSSNHFSGPIPSLGXXXXXXXXXXXXXXXT 395
+LA IS +G + S L LD SSN+FS IP LG
Sbjct: 182 HLA---ISGNKISGDVDVSRC--VNLEFLDVSSNNFSTGIPFLGDCSA------------ 224
Query: 396 GRILFTPWEQLLNIKYVHLNYNSLSGSIPRSXXXXXXXXXXXXSTNQFENQLPEFSNESS 455
++++ ++ N LSG R+ S+NQF +P +S
Sbjct: 225 -------------LQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKS- 270
Query: 456 SVMNFLDLSGNRLEGPIPISIFFELRNLLTLDLSSNKFSRLKLASSKPRGTPNXXXXXXX 515
+ +L L+ N+ G IP + L LDLS N F + P P
Sbjct: 271 --LQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHF-----YGAVP---PFFGSCSLL 320
Query: 516 XXXXXXXXXISGEIPNWIWEFSANLVFLNLSHNLLESLQEPYFIAGVGLLDLHSNELQGS 575
SGE+P +++L + + G+ +LDL NE G
Sbjct: 321 ESLALSSNNFSGELP-------------------MDTLLK---MRGLKVLDLSFNEFSGE 358
Query: 576 IPYMSPNTSY----MDYSNNNFT--TIPADIGNFMSGTIFFSAANNSLTGVIPQSVCNAT 629
+P N S +D S+NNF+ +P N + NN TG IP ++ N +
Sbjct: 359 LPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCS 418
Query: 630 YFSVLDLSNNSLSGTIPTCLITNSSRTLGVLNLRGNSLNGTLSDRVPGICGLQILDLNGN 689
L LS N LSGTIP+ L S L L L N L G + + + L+ L L+ N
Sbjct: 419 ELVSLHLSFNYLSGTIPSSL--GSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFN 476
Query: 690 QLEGMVPKSLANCKMLQVLDLGNNNFSKKFPCWLKNASSLQVLVLRSNNFSGNISCPRNN 749
L G +P L+NC L + L NN + + P W+ +L +L L +N+FSGNI P
Sbjct: 477 DLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNI--PAEL 534
Query: 750 VSWPLLQIIDLASNKFSGRLSKKWLLTLEKMMNAETKSGSELKHLQYGFM-----GGYQF 804
L +DL +N F+G + K+ A +G +++ M G
Sbjct: 535 GDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIA-ANFIAGKRYVYIKNDGMKKECHGAGNL 593
Query: 805 YQXXXXXXXKSVEILVRKVSNIFTSIDFSSNNFEGPIPEEMGRFKSLYALNLSQNVL--- 861
+ + + R NI + + + G S+ L++S N+L
Sbjct: 594 LEFQGIRSEQLNRLSTRNPCNITSRV------YGGHTSPTFDNNGSMMFLDMSYNMLSGY 647
Query: 862 ---------------------TGSIPSSFGNLEQIESLDLSMNNLSGKIPAPLAXXXXXX 900
+GSIP G+L + LDLS N L G+IP ++
Sbjct: 648 IPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLT 707
Query: 901 XXXXXXXXXXGKIPTSTQLQSFSPTSYEGNKGLYGPPL 938
G IP Q ++F P + N GL G PL
Sbjct: 708 EIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPL 745
Score = 108 bits (270), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 160/571 (28%), Positives = 235/571 (41%), Gaps = 99/571 (17%)
Query: 182 FLQNLTELRELHLDNVDLFASGTDWCKALSFLPNLQVLSLSRCELSGPINQYLANLRSLS 241
FL + + L+ L + L D+ +A+S L++L++S + GPI L+SL
Sbjct: 218 FLGDCSALQHLDISGNKLSG---DFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQ 272
Query: 242 AIRLPNNYGLSSPVPEFLANFSHLTALDLGDCQLQGKFPEKILQVPTLETLDLSDNPSLQ 301
+ L N + +P+FL+ G C TL LDLS N
Sbjct: 273 YLSLAENK-FTGEIPDFLS----------GACD-------------TLTGLDLSGNHFYG 308
Query: 302 GSLPHFPKNSSLRNLILFGTGFSGTLP-NSIGNLENLANVDISSCNFTGPIPTSMANLTR 360
P F S L +L L FSG LP +++ + L +D+S F+G +P S+ NL+
Sbjct: 309 AVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSA 368
Query: 361 -LFHLDFSSNHFSGPI-PSLGXXXXXXXXXXXXXXX--TGRILFTPWEQLLNIKYVHLNY 416
L LD SSN+FSGPI P+L TG+I T + +HL++
Sbjct: 369 SLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPT-LSNCSELVSLHLSF 427
Query: 417 NSLSGSIPRSXXXXXXXXXXXXSTNQFENQLPEFSNESSSVMNFLDLSGNRLEGPIPISI 476
N LSG+IP S N E ++P+ + L L N L G IP S
Sbjct: 428 NYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQ-ELMYVKTLETLILDFNDLTGEIP-SG 485
Query: 477 FFELRNLLTLDLSSNKFSRLKLASSKPRGTPNXXXXXXXXXXXXXXXXISGEIPNWIWEF 536
NL + LS+N+ ++GEIP WI
Sbjct: 486 LSNCTNLNWISLSNNR--------------------------------LTGEIPKWIGRL 513
Query: 537 SANLVFLNLSHNLLES--LQEPYFIAGVGLLDLHSNELQGSIPYMSPNTS---------- 584
NL L LS+N E + LDL++N G+IP S
Sbjct: 514 E-NLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAG 572
Query: 585 --YMDYSNNNFTTIPADIGNFMSGTIFFSAANNSLTGVIPQSVCNATY------------ 630
Y+ N+ GN + S N L+ P ++ + Y
Sbjct: 573 KRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNG 632
Query: 631 -FSVLDLSNNSLSGTIPTCLITNSSRTLGVLNLRGNSLNGTLSDRVPGICGLQILDLNGN 689
LD+S N LSG IP + S L +LNL N ++G++ D V + GL ILDL+ N
Sbjct: 633 SMMFLDMSYNMLSGYIPKEI--GSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSN 690
Query: 690 QLEGMVPKSLANCKMLQVLDLGNNNFSKKFP 720
+L+G +P++++ ML +DL NNN S P
Sbjct: 691 KLDGRIPQAMSALTMLTEIDLSNNNLSGPIP 721
Score = 50.4 bits (119), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 82/335 (24%), Positives = 133/335 (39%), Gaps = 43/335 (12%)
Query: 143 GFIQDIPIEISSLTRLVTLDLSAEPSGGFSFLEISNLSLFLQNLTELRELHLDNVDLFAS 202
GF IP +S+ + LV+L LS F++L + L +L++LR+L L L
Sbjct: 405 GFTGKIPPTLSNCSELVSLHLS------FNYLS-GTIPSSLGSLSKLRDLKLW---LNML 454
Query: 203 GTDWCKALSFLPNLQVLSLSRCELSGPINQYLANLRSLSAIRLPNNYGLSSPVPEFLANF 262
+ + L ++ L+ L L +L+G I L+N +L+ I L NN L+ +P+++
Sbjct: 455 EGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNR-LTGEIPKWIGRL 513
Query: 263 SHLTALDLGDCQLQGKFPEKILQVPTLETLDLSDNPSLQGSLPH---------------- 306
+L L L + G P ++ +L LDL+ N G++P
Sbjct: 514 ENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTN-LFNGTIPAAMFKQSGKIAANFIAG 572
Query: 307 ----FPKNSSLRNLILFGTG----FSGTLPNSIGNLENLANVDISSCNFTGPIPTSMANL 358
+ KN ++ G G F G + L +I+S + G + N
Sbjct: 573 KRYVYIKNDGMKKEC-HGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNN 631
Query: 359 TRLFHLDFSSNHFSGPIPS-LGXXXXXXXXXXXXXXXTGRILFTPWE--QLLNIKYVHLN 415
+ LD S N SG IP +G +G I P E L + + L+
Sbjct: 632 GSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSI---PDEVGDLRGLNILDLS 688
Query: 416 YNSLSGSIPRSXXXXXXXXXXXXSTNQFENQLPEF 450
N L G IP++ S N +PE
Sbjct: 689 SNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM 723
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 49/95 (51%), Gaps = 2/95 (2%)
Query: 208 KALSFLPNLQVLSLSRCELSGPINQYLANLRSLSAIRLPNNYGLSSPVPEFLANFSHLTA 267
K + +P L +L+L ++SG I + +LR L+ + L +N L +P+ ++ + LT
Sbjct: 650 KEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNK-LDGRIPQAMSALTMLTE 708
Query: 268 LDLGDCQLQGKFPEKILQVPTLETLDLSDNPSLQG 302
+DL + L G PE + Q T +NP L G
Sbjct: 709 IDLSNNNLSGPIPE-MGQFETFPPAKFLNNPGLCG 742
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 63.2 bits (152), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 58/168 (34%), Positives = 82/168 (48%), Gaps = 15/168 (8%)
Query: 217 QVLSLSRCELSG-------PINQYLANLRSLSAIRLPNNYGLSSPVPEFLANFSHLTALD 269
Q ++ +LSG PI LANL L+ + + L P+P +A + L L
Sbjct: 48 QTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLY 107
Query: 270 LGDCQLQGKFPEKILQVPTLETLDLSDNPSLQGSLPHFPKNSSLRNLI---LFGTGFSGT 326
+ + G P+ + Q+ TL TLD S N +L G+LP P SSL NL+ G SG
Sbjct: 108 ITHTNVSGAIPDFLSQIKTLVTLDFSYN-ALSGTLP--PSISSLPNLVGITFDGNRISGA 164
Query: 327 LPNSIGNLENL-ANVDISSCNFTGPIPTSMANLTRLFHLDFSSNHFSG 373
+P+S G+ L ++ IS TG IP + ANL F +D S N G
Sbjct: 165 IPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAF-VDLSRNMLEG 211
Score = 53.9 bits (128), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 67/286 (23%), Positives = 114/286 (39%), Gaps = 64/286 (22%)
Query: 596 IPADIGNFMSGTIFFSAANNSLTGVIPQSVCNATYFSVLDLSNNSLSGTIPTCLITNSSR 655
IP+ + N + N+L G IP ++ T L +++ ++SG IP L + +
Sbjct: 68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFL--SQIK 125
Query: 656 TLGVLNLRGNSLNGTLSDRVPGICGLQILDLNGNQLEGMVPKSLAN-CKMLQVLDLGNNN 714
TL L+ N+L+GTL + + L + +GN++ G +P S + K+ + + N
Sbjct: 126 TLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNR 185
Query: 715 FSKKFPCWLKNASSLQVLVLRSNNFSGNISC----PRNNVSWPLLQIIDLASNKFSGRLS 770
+ K P N +L + L N G+ S +N Q I LA N + L
Sbjct: 186 LTGKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNT------QKIHLAKNSLAFDLG 238
Query: 771 KKWLLTLEKMMNAETKSGSELKHLQYGFMGGYQFYQXXXXXXXKSVEILVRKVSNIFTSI 830
K + L K +N +
Sbjct: 239 K---VGLSKNLNG----------------------------------------------L 249
Query: 831 DFSSNNFEGPIPEEMGRFKSLYALNLSQNVLTGSIPSSFGNLEQIE 876
D +N G +P+ + + K L++LN+S N L G IP GNL++ +
Sbjct: 250 DLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFD 294
Score = 49.7 bits (117), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 70/166 (42%), Gaps = 27/166 (16%)
Query: 327 LPNSIGNLENLANVDISSCN-FTGPIPTSMANLTRLFHLDFSSNHFSGPIPSLGXXXXXX 385
+P+S+ NL L + I N GPIP ++A LT+L +L + + SG IP
Sbjct: 68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDF------- 120
Query: 386 XXXXXXXXXTGRILFTPWEQLLNIKYVHLNYNSLSGSIPRSXXXXXXXXXXXXSTNQFEN 445
Q+ + + +YN+LSG++P S N+
Sbjct: 121 -----------------LSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISG 163
Query: 446 QLPEFSNESSSVMNFLDLSGNRLEGPIPISIFFELRNLLTLDLSSN 491
+P+ S + + +S NRL G IP + F NL +DLS N
Sbjct: 164 AIPDSYGSFSKLFTSMTISRNRLTGKIPPT--FANLNLAFVDLSRN 207
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/159 (24%), Positives = 53/159 (33%), Gaps = 47/159 (29%)
Query: 827 FTSIDFSSNNFEGPIPEEMGRFKSLY-ALNLSQNVLTGSIPSSFGNL------------- 872
I F N G IP+ G F L+ ++ +S+N LTG IP +F NL
Sbjct: 151 LVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLE 210
Query: 873 ---------------------------------EQIESLDLSMNNLSGKIPAPLAXXXXX 899
+ + LDL N + G +P L
Sbjct: 211 GDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFL 270
Query: 900 XXXXXXXXXXXGKIPTSTQLQSFSPTSYEGNKGLYGPPL 938
G+IP LQ F ++Y NK L G PL
Sbjct: 271 HSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPL 309
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 55/200 (27%), Positives = 87/200 (43%), Gaps = 11/200 (5%)
Query: 527 GEIPNWIWEFSANLVFLNLSHNLLESLQEPYF--IAGVGLLDLHSNELQGSIP---YMSP 581
G IP I + + L +L ++H + + I + LD N L G++P P
Sbjct: 91 GPIPPAIAKLT-QLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLP 149
Query: 582 NTSYMDYSNNNFT-TIPADIGNFMSGTIFFSAANNSLTGVIPQSVCNATYFSVLDLSNNS 640
N + + N + IP G+F + + N LTG IP + N + +DLS N
Sbjct: 150 NLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNM 208
Query: 641 LSGTIPTCLITNSSRTLGVLNLRGNSLNGTLSDRVPGICGLQILDLNGNQLEGMVPKSLA 700
L G ++ S + ++L NSL L +V L LDL N++ G +P+ L
Sbjct: 209 LEGD--ASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLT 265
Query: 701 NCKMLQVLDLGNNNFSKKFP 720
K L L++ NN + P
Sbjct: 266 QLKFLHSLNVSFNNLCGEIP 285
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 38/69 (55%), Gaps = 1/69 (1%)
Query: 827 FTSIDFSSNNFEGPIPEEMGRFKSLYALNLSQNVLTGSIPSSFGNLEQI-ESLDLSMNNL 885
++DFS N G +P + +L + N ++G+IP S+G+ ++ S+ +S N L
Sbjct: 127 LVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRL 186
Query: 886 SGKIPAPLA 894
+GKIP A
Sbjct: 187 TGKIPPTFA 195
Score = 43.1 bits (100), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 38/82 (46%)
Query: 835 NNFEGPIPEEMGRFKSLYALNLSQNVLTGSIPSSFGNLEQIESLDLSMNNLSGKIPAPLA 894
NN GPIP + + L+ L ++ ++G+IP ++ + +LD S N LSG +P ++
Sbjct: 87 NNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSIS 146
Query: 895 XXXXXXXXXXXXXXXXGKIPTS 916
G IP S
Sbjct: 147 SLPNLVGITFDGNRISGAIPDS 168
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 71/315 (22%), Positives = 113/315 (35%), Gaps = 90/315 (28%)
Query: 339 NVDISSCNFTGP--IPTSMANLTRLFHLDFSS-NHFSGPIPSLGXXXXXXXXXXXXXXXT 395
N+D+S N P IP+S+ANL L L N+ GPIP
Sbjct: 54 NLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPP------------------ 95
Query: 396 GRILFTPWEQLLNIKYVHLNYNSLSGSIPRSXXXXXXXXXXXXSTNQFENQLPEFSNESS 455
+L + Y+++ + ++SG+IP +F ++
Sbjct: 96 ------AIAKLTQLHYLYITHTNVSGAIP------------------------DFLSQIK 125
Query: 456 SVMNFLDLSGNRLEGPIPISIFFELRNLLTLDLSSNKFSRLKLASSKPRGTPNXXXXXXX 515
+++ LD S N L G +P SI L NL+ + N+
Sbjct: 126 TLVT-LDFSYNALSGTLPPSIS-SLPNLVGITFDGNR----------------------- 160
Query: 516 XXXXXXXXXISGEIPNWIWEFSANLVFLNLSHNLLESLQEPYFI-AGVGLLDLHSNELQG 574
ISG IP+ FS + +S N L P F + +DL N L+G
Sbjct: 161 ---------ISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEG 211
Query: 575 SIPYM---SPNTSYMDYSNNNFTTIPADIGNFMSGTIFFSAANNSLTGVIPQSVCNATYF 631
+ NT + + N+ +G NN + G +PQ + +
Sbjct: 212 DASVLFGSDKNTQKIHLAKNSLAFDLGKVG-LSKNLNGLDLRNNRIYGTLPQGLTQLKFL 270
Query: 632 SVLDLSNNSLSGTIP 646
L++S N+L G IP
Sbjct: 271 HSLNVSFNNLCGEIP 285
Score = 37.0 bits (84), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 86/337 (25%), Positives = 131/337 (38%), Gaps = 46/337 (13%)
Query: 48 LSKDSITSTKLSQWSSHHSSDCCD--WNGVDCD---EAGHVIGLDLSREPIIGGLENATG 102
+ KD T LS W ++DCC+ W GV CD + V LDLS + +
Sbjct: 14 IKKDLGNPTTLSSWLP--TTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSS 71
Query: 103 LFSLQYLRSLNLGFTLFSGIQIPSRXXXXXXXXXXXXSQSGFIQDIPIEISSLTRLVTLD 162
L +L YL L +G GI + + IP I+ LT+L L
Sbjct: 72 LANLPYLNFLYIG-----GI-------------------NNLVGPIPPAIAKLTQLHYLY 107
Query: 163 LSAEPSGGFSFLEISNLSLFLQNLTELRELHLDNVDLFASGTDWCKALSFLPNLQVLSLS 222
++ G + FL + L L L SGT ++S LPNL ++
Sbjct: 108 ITHTNVSGA-------IPDFLSQIKTLVTLDFSYNAL--SGT-LPPSISSLPNLVGITFD 157
Query: 223 RCELSGPINQYLANLRSLSAIRLPNNYGLSSPVPEFLANFSHLTALDLGDCQLQGKFPEK 282
+SG I + L + L+ +P AN +L +DL L+G
Sbjct: 158 GNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNMLEGDASVL 216
Query: 283 ILQVPTLETLDLSDNPSLQGSLPHFPKNSSLRNLILFGTGFSGTLPNSIGNLENLANVDI 342
+ + L+ N SL L + +L L L GTLP + L+ L ++++
Sbjct: 217 FGSDKNTQKIHLAKN-SLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNV 275
Query: 343 SSCNFTGPIPTSMANLTRLFHLDFSSNH--FSGPIPS 377
S N G IP NL R +++N P+P+
Sbjct: 276 SFNNLCGEIPQG-GNLQRFDVSAYANNKCLCGSPLPA 311
Score = 31.2 bits (69), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 45/205 (21%), Positives = 83/205 (40%), Gaps = 8/205 (3%)
Query: 570 NELQGSIPYMSPNTSYMDYSNNNFTTIPADIGNFMSGT---IFFSAANNSLTGVIPQSVC 626
N L G IP + + Y T + I +F+S + + N+L+G +P S+
Sbjct: 87 NNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSIS 146
Query: 627 NATYFSVLDLSNNSLSGTIPTCLITNSSRTLGVLNLRGNSLNGTLSDRVPGICGLQILDL 686
+ + N +SG IP + S+ + + N L G + + L +DL
Sbjct: 147 SLPNLVGITFDGNRISGAIPDS-YGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDL 204
Query: 687 NGNQLEGMVPKSLANCKMLQVLDLGNNNFSKKFPCWLKNASSLQVLVLRSNNFSGNISCP 746
+ N LEG + K Q + L N+ + + + +L L LR+N G + P
Sbjct: 205 SRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDL-GKVGLSKNLNGLDLRNNRIYGTL--P 261
Query: 747 RNNVSWPLLQIIDLASNKFSGRLSK 771
+ L ++++ N G + +
Sbjct: 262 QGLTQLKFLHSLNVSFNNLCGEIPQ 286
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 84/307 (27%), Positives = 126/307 (41%), Gaps = 44/307 (14%)
Query: 58 LSQWSSHHSSDCCDWNGV--DCDEAGHVIGLDLSR--EPIIGGLENAT--GLFSLQYLRS 111
LSQW H+++D W+ + I R + LE+AT G +L+ LRS
Sbjct: 32 LSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALE-LRS 90
Query: 112 LNLGFTLFSGIQIPSRXXXXXXXXXXXXSQSGFIQDIPIEISSLTRLVTLDLSAEPSGGF 171
+ L Q P + +G + ++P L TL L+ P
Sbjct: 91 VPLP-------QFPDQAFRLSHLQHXTIDAAG-LXELPDTXQQFAGLETLTLARNP---- 138
Query: 172 SFLEISNLSLFLQNLTELRELHLDNVDLFASGTDWCKALSFLPNLQVLSLSRCELSGPIN 231
+ L + +L LREL + C L+ LP L+ + SG +
Sbjct: 139 ----LRALPASIASLNRLRELSIRA----------CPELTELPE----PLASTDASGE-H 179
Query: 232 QYLANLRSLSAIRLPNNYGLSSPVPEFLANFSHLTALDLGDCQLQGKFPEKILQVPTLET 291
Q L NL+SL RL G+ S +P +AN +L +L + + L P I +P LE
Sbjct: 180 QGLVNLQSL---RL-EWTGIRS-LPASIANLQNLKSLKIRNSPLSALGP-AIHHLPKLEE 233
Query: 292 LDLSDNPSLQGSLPHFPKNSSLRNLILFGTGFSGTLPNSIGNLENLANVDISSCNFTGPI 351
LDL +L+ P F + L+ LIL TLP I L L +D+ C +
Sbjct: 234 LDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRL 293
Query: 352 PTSMANL 358
P+ +A L
Sbjct: 294 PSLIAQL 300
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 43.5 bits (101), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 51/109 (46%), Gaps = 1/109 (0%)
Query: 262 FSHLTALDLGDCQLQGKFPEKILQVPTLETLDLSDNPSLQGSLPHFPKNSSLRNLILFGT 321
F L LDL C++Q + L TL L+ NP +L F SSL+ L+ T
Sbjct: 53 FPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVALET 112
Query: 322 GFSGTLPNSIGNLENLANVDISSCNFTG-PIPTSMANLTRLFHLDFSSN 369
+ IG+L+ L ++++ +P +NLT L HLD SSN
Sbjct: 113 NLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN 161
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 845 MGRFKSLYALNLSQNVLTG-SIPSSFGNLEQIESLDLSMNNL 885
+G K+L LN++ N++ +P F NL +E LDLS N +
Sbjct: 122 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 163
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 43.1 bits (100), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 51/109 (46%), Gaps = 1/109 (0%)
Query: 262 FSHLTALDLGDCQLQGKFPEKILQVPTLETLDLSDNPSLQGSLPHFPKNSSLRNLILFGT 321
F L LDL C++Q + L TL L+ NP +L F SSL+ L+ T
Sbjct: 51 FPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVET 110
Query: 322 GFSGTLPNSIGNLENLANVDISSCNFTG-PIPTSMANLTRLFHLDFSSN 369
+ IG+L+ L ++++ +P +NLT L HLD SSN
Sbjct: 111 NLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN 159
Score = 38.1 bits (87), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 47/99 (47%), Gaps = 3/99 (3%)
Query: 650 ITNSSRTLGVLNLRGNSLNGT-LSDRVPGICGLQILDLNGNQLEGMVPKSLANCKMLQVL 708
I N +L VL + GNS L D + L LDL+ QLE + P + + LQVL
Sbjct: 440 IFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVL 499
Query: 709 DLGNNNFSKKFPCWLKNASSLQVLVLRSNNFSGNISCPR 747
++ +N +SLQ + L +N + + SCPR
Sbjct: 500 NMASNQLKSVPDGIFDRLTSLQKIWLHTNPW--DCSCPR 536
Score = 35.4 bits (80), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 38/85 (44%)
Query: 213 LPNLQVLSLSRCELSGPINQYLANLRSLSAIRLPNNYGLSSPVPEFLANFSHLTALDLGD 272
L NL L +S N L SL +++ N + +P+ +LT LDL
Sbjct: 420 LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQ 479
Query: 273 CQLQGKFPEKILQVPTLETLDLSDN 297
CQL+ P + +L+ L+++ N
Sbjct: 480 CQLEQLSPTAFNSLSSLQVLNMASN 504
Score = 32.0 bits (71), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 845 MGRFKSLYALNLSQNVLTG-SIPSSFGNLEQIESLDLSMNNL 885
+G K+L LN++ N++ +P F NL +E LDLS N +
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 161
Score = 31.6 bits (70), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 49/162 (30%), Positives = 69/162 (42%), Gaps = 6/162 (3%)
Query: 213 LPNLQVLSLSRCELS--GPINQYLANLRSLSAIRLPNNYGLSSPVPEFLANFSHLTALDL 270
LP+L+ L LSR LS G +Q SL + L N G+ + FL L LD
Sbjct: 346 LPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFN-GVITMSSNFLG-LEQLEHLDF 403
Query: 271 GDCQLQGKFPEKI-LQVPTLETLDLSDNPSLQGSLPHFPKNSSLRNLILFGTGFSGT-LP 328
L+ + L + L LD+S + F SSL L + G F LP
Sbjct: 404 QHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLP 463
Query: 329 NSIGNLENLANVDISSCNFTGPIPTSMANLTRLFHLDFSSNH 370
+ L NL +D+S C PT+ +L+ L L+ +SN
Sbjct: 464 DIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQ 505
Score = 30.0 bits (66), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 37/71 (52%)
Query: 209 ALSFLPNLQVLSLSRCELSGPINQYLANLRSLSAIRLPNNYGLSSPVPEFLANFSHLTAL 268
A S L +LQ L L+ N + +L++L + + +N S +PE+ +N ++L L
Sbjct: 95 AFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHL 154
Query: 269 DLGDCQLQGKF 279
DL ++Q +
Sbjct: 155 DLSSNKIQSIY 165
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 43.1 bits (100), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 51/109 (46%), Gaps = 1/109 (0%)
Query: 262 FSHLTALDLGDCQLQGKFPEKILQVPTLETLDLSDNPSLQGSLPHFPKNSSLRNLILFGT 321
F L LDL C++Q + L TL L+ NP +L F SSL+ L+ T
Sbjct: 53 FPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVET 112
Query: 322 GFSGTLPNSIGNLENLANVDISSCNFTG-PIPTSMANLTRLFHLDFSSN 369
+ IG+L+ L ++++ +P +NLT L HLD SSN
Sbjct: 113 NLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN 161
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 845 MGRFKSLYALNLSQNVLTG-SIPSSFGNLEQIESLDLSMNNL 885
+G K+L LN++ N++ +P F NL +E LDLS N +
Sbjct: 122 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 163
Score = 29.6 bits (65), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 37/71 (52%)
Query: 209 ALSFLPNLQVLSLSRCELSGPINQYLANLRSLSAIRLPNNYGLSSPVPEFLANFSHLTAL 268
A S L +LQ L L+ N + +L++L + + +N S +PE+ +N ++L L
Sbjct: 97 AFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHL 156
Query: 269 DLGDCQLQGKF 279
DL ++Q +
Sbjct: 157 DLSSNKIQSIY 167
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 43.1 bits (100), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 51/109 (46%), Gaps = 1/109 (0%)
Query: 262 FSHLTALDLGDCQLQGKFPEKILQVPTLETLDLSDNPSLQGSLPHFPKNSSLRNLILFGT 321
F L LDL C++Q + L TL L+ NP +L F SSL+ L+ T
Sbjct: 75 FPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVET 134
Query: 322 GFSGTLPNSIGNLENLANVDISSCNFTG-PIPTSMANLTRLFHLDFSSN 369
+ IG+L+ L ++++ +P +NLT L HLD SSN
Sbjct: 135 NLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN 183
Score = 38.1 bits (87), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 44/86 (51%), Gaps = 5/86 (5%)
Query: 650 ITNSSRTLGVLNLRGNSLNGT-LSDRVPGICGLQILDLNGNQLEGMVPKSLANCKMLQVL 708
I N +L VL + GNS L D + L LDL+ QLE + P + + LQVL
Sbjct: 464 IFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVL 523
Query: 709 DLGNNNFS--KKFPCWLKNASSLQVL 732
++ +NNF FP K +SLQVL
Sbjct: 524 NMSHNNFFSLDTFP--YKCLNSLQVL 547
Score = 36.2 bits (82), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 38/85 (44%)
Query: 213 LPNLQVLSLSRCELSGPINQYLANLRSLSAIRLPNNYGLSSPVPEFLANFSHLTALDLGD 272
L NL L +S N L SL +++ N + +P+ +LT LDL
Sbjct: 444 LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQ 503
Query: 273 CQLQGKFPEKILQVPTLETLDLSDN 297
CQL+ P + +L+ L++S N
Sbjct: 504 CQLEQLSPTAFNSLSSLQVLNMSHN 528
Score = 33.1 bits (74), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 41/88 (46%), Gaps = 3/88 (3%)
Query: 677 GICGLQILDLNGNQL-EGMVPKSLANCKMLQVLDLGNNNFSKKFPCWLKNASSLQVLVLR 735
G+ L++L + GN E +P + L LDL + P + SSLQVL +
Sbjct: 467 GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMS 526
Query: 736 SNNFSGNISCPRNNVSWPLLQIIDLASN 763
NNF + P ++ LQ++D + N
Sbjct: 527 HNNFFSLDTFPYKCLNS--LQVLDYSLN 552
Score = 32.0 bits (71), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 50/163 (30%), Positives = 70/163 (42%), Gaps = 6/163 (3%)
Query: 213 LPNLQVLSLSRCELS--GPINQYLANLRSLSAIRLPNNYGLSSPVPEFLANFSHLTALDL 270
LP+L+ L LSR LS G +Q SL + L N G+ + FL L LD
Sbjct: 370 LPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFN-GVITMSSNFLG-LEQLEHLDF 427
Query: 271 GDCQLQGKFPEKI-LQVPTLETLDLSDNPSLQGSLPHFPKNSSLRNLILFGTGFSGT-LP 328
L+ + L + L LD+S + F SSL L + G F LP
Sbjct: 428 QHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLP 487
Query: 329 NSIGNLENLANVDISSCNFTGPIPTSMANLTRLFHLDFSSNHF 371
+ L NL +D+S C PT+ +L+ L L+ S N+F
Sbjct: 488 DIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF 530
Score = 32.0 bits (71), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 845 MGRFKSLYALNLSQNVLTG-SIPSSFGNLEQIESLDLSMNNL 885
+G K+L LN++ N++ +P F NL +E LDLS N +
Sbjct: 144 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 185
Score = 30.0 bits (66), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 37/71 (52%)
Query: 209 ALSFLPNLQVLSLSRCELSGPINQYLANLRSLSAIRLPNNYGLSSPVPEFLANFSHLTAL 268
A S L +LQ L L+ N + +L++L + + +N S +PE+ +N ++L L
Sbjct: 119 AFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHL 178
Query: 269 DLGDCQLQGKF 279
DL ++Q +
Sbjct: 179 DLSSNKIQSIY 189
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 43.1 bits (100), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 51/109 (46%), Gaps = 1/109 (0%)
Query: 262 FSHLTALDLGDCQLQGKFPEKILQVPTLETLDLSDNPSLQGSLPHFPKNSSLRNLILFGT 321
F L LDL C++Q + L TL L+ NP +L F SSL+ L+ T
Sbjct: 52 FPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVET 111
Query: 322 GFSGTLPNSIGNLENLANVDISSCNFTG-PIPTSMANLTRLFHLDFSSN 369
+ IG+L+ L ++++ +P +NLT L HLD SSN
Sbjct: 112 NLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN 160
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 845 MGRFKSLYALNLSQNVLTG-SIPSSFGNLEQIESLDLSMNNL 885
+G K+L LN++ N++ +P F NL +E LDLS N +
Sbjct: 121 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 162
Score = 29.6 bits (65), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 37/71 (52%)
Query: 209 ALSFLPNLQVLSLSRCELSGPINQYLANLRSLSAIRLPNNYGLSSPVPEFLANFSHLTAL 268
A S L +LQ L L+ N + +L++L + + +N S +PE+ +N ++L L
Sbjct: 96 AFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHL 155
Query: 269 DLGDCQLQGKF 279
DL ++Q +
Sbjct: 156 DLSSNKIQSIY 166
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 42.7 bits (99), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 51/109 (46%), Gaps = 1/109 (0%)
Query: 262 FSHLTALDLGDCQLQGKFPEKILQVPTLETLDLSDNPSLQGSLPHFPKNSSLRNLILFGT 321
F L LDL C++Q + L TL L+ NP +L F SSL+ L+ T
Sbjct: 51 FPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVET 110
Query: 322 GFSGTLPNSIGNLENLANVDISSCNFTG-PIPTSMANLTRLFHLDFSSN 369
+ IG+L+ L ++++ +P +NLT L HLD SSN
Sbjct: 111 NLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN 159
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 845 MGRFKSLYALNLSQNVLTG-SIPSSFGNLEQIESLDLSMNNL 885
+G K+L LN++ N++ +P F NL +E LDLS N +
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 161
Score = 29.6 bits (65), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 37/71 (52%)
Query: 209 ALSFLPNLQVLSLSRCELSGPINQYLANLRSLSAIRLPNNYGLSSPVPEFLANFSHLTAL 268
A S L +LQ L L+ N + +L++L + + +N S +PE+ +N ++L L
Sbjct: 95 AFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHL 154
Query: 269 DLGDCQLQGKF 279
DL ++Q +
Sbjct: 155 DLSSNKIQSIY 165
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 51/109 (46%), Gaps = 1/109 (0%)
Query: 262 FSHLTALDLGDCQLQGKFPEKILQVPTLETLDLSDNPSLQGSLPHFPKNSSLRNLILFGT 321
F L LDL C++Q + L TL L+ NP +L F SSL+ L+ T
Sbjct: 52 FPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVET 111
Query: 322 GFSGTLPNSIGNLENLANVDISSCNFTG-PIPTSMANLTRLFHLDFSSN 369
+ IG+L+ L ++++ +P +NLT L HLD SSN
Sbjct: 112 NLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN 160
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 845 MGRFKSLYALNLSQNVLTG-SIPSSFGNLEQIESLDLSMNNL 885
+G K+L LN++ N++ +P F NL +E LDLS N +
Sbjct: 121 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 162
Score = 29.6 bits (65), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 37/71 (52%)
Query: 209 ALSFLPNLQVLSLSRCELSGPINQYLANLRSLSAIRLPNNYGLSSPVPEFLANFSHLTAL 268
A S L +LQ L L+ N + +L++L + + +N S +PE+ +N ++L L
Sbjct: 96 AFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHL 155
Query: 269 DLGDCQLQGKF 279
DL ++Q +
Sbjct: 156 DLSSNKIQSIY 166
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 51/109 (46%), Gaps = 1/109 (0%)
Query: 262 FSHLTALDLGDCQLQGKFPEKILQVPTLETLDLSDNPSLQGSLPHFPKNSSLRNLILFGT 321
F L LDL C++Q + L TL L+ NP +L F SSL+ L+ T
Sbjct: 51 FPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVET 110
Query: 322 GFSGTLPNSIGNLENLANVDISSCNFTG-PIPTSMANLTRLFHLDFSSN 369
+ IG+L+ L ++++ +P +NLT L HLD SSN
Sbjct: 111 NLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN 159
Score = 37.7 bits (86), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 44/86 (51%), Gaps = 5/86 (5%)
Query: 650 ITNSSRTLGVLNLRGNSLNGT-LSDRVPGICGLQILDLNGNQLEGMVPKSLANCKMLQVL 708
I N +L VL + GNS L D + L LDL+ QLE + P + + LQVL
Sbjct: 440 IFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVL 499
Query: 709 DLGNNNFS--KKFPCWLKNASSLQVL 732
++ +NNF FP K +SLQVL
Sbjct: 500 NMSHNNFFSLDTFP--YKCLNSLQVL 523
Score = 36.2 bits (82), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 38/85 (44%)
Query: 213 LPNLQVLSLSRCELSGPINQYLANLRSLSAIRLPNNYGLSSPVPEFLANFSHLTALDLGD 272
L NL L +S N L SL +++ N + +P+ +LT LDL
Sbjct: 420 LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQ 479
Query: 273 CQLQGKFPEKILQVPTLETLDLSDN 297
CQL+ P + +L+ L++S N
Sbjct: 480 CQLEQLSPTAFNSLSSLQVLNMSHN 504
Score = 33.1 bits (74), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 41/88 (46%), Gaps = 3/88 (3%)
Query: 677 GICGLQILDLNGNQL-EGMVPKSLANCKMLQVLDLGNNNFSKKFPCWLKNASSLQVLVLR 735
G+ L++L + GN E +P + L LDL + P + SSLQVL +
Sbjct: 443 GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMS 502
Query: 736 SNNFSGNISCPRNNVSWPLLQIIDLASN 763
NNF + P ++ LQ++D + N
Sbjct: 503 HNNFFSLDTFPYKCLNS--LQVLDYSLN 528
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 50/163 (30%), Positives = 70/163 (42%), Gaps = 6/163 (3%)
Query: 213 LPNLQVLSLSRCELS--GPINQYLANLRSLSAIRLPNNYGLSSPVPEFLANFSHLTALDL 270
LP+L+ L LSR LS G +Q SL + L N G+ + FL L LD
Sbjct: 346 LPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFN-GVITMSSNFLG-LEQLEHLDF 403
Query: 271 GDCQLQGKFPEKI-LQVPTLETLDLSDNPSLQGSLPHFPKNSSLRNLILFGTGFSGT-LP 328
L+ + L + L LD+S + F SSL L + G F LP
Sbjct: 404 QHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLP 463
Query: 329 NSIGNLENLANVDISSCNFTGPIPTSMANLTRLFHLDFSSNHF 371
+ L NL +D+S C PT+ +L+ L L+ S N+F
Sbjct: 464 DIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF 506
Score = 32.0 bits (71), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 845 MGRFKSLYALNLSQNVLTG-SIPSSFGNLEQIESLDLSMNNL 885
+G K+L LN++ N++ +P F NL +E LDLS N +
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 161
Score = 30.0 bits (66), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 37/71 (52%)
Query: 209 ALSFLPNLQVLSLSRCELSGPINQYLANLRSLSAIRLPNNYGLSSPVPEFLANFSHLTAL 268
A S L +LQ L L+ N + +L++L + + +N S +PE+ +N ++L L
Sbjct: 95 AFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHL 154
Query: 269 DLGDCQLQGKF 279
DL ++Q +
Sbjct: 155 DLSSNKIQSIY 165
>pdb|2XOT|A Chain A, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
pdb|2XOT|B Chain B, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
Length = 361
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 68/246 (27%), Positives = 106/246 (43%), Gaps = 28/246 (11%)
Query: 601 GNFMSGTIFFSAANNSLTGVIPQSVCNATYFSVLDLSNNSLSGT----IPTCLITNSSRT 656
N + + S + L V PQS+ +Y ++LDLS+N+LS PT L
Sbjct: 14 ANCLCASNILSCSKQQLPNV-PQSL--PSYTALLDLSHNNLSRLRAEWTPTRLTN----- 65
Query: 657 LGVLNLRGNSLNGTLSDRVPGICGLQILDLNGNQLEGMVPKSLANCKMLQVLDLGNNNFS 716
L L L N LN S+ + L+ LDL+ N L + ++ + L+VL L NN+
Sbjct: 66 LHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIV 125
Query: 717 KKFPCWLKNASSLQVLVLRSNNFSG-NISCPRNNVSWPLLQIIDLASNKFSGRLSKKWLL 775
++ + LQ L L N S + ++ P L ++DL+SNK KK L
Sbjct: 126 VVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKL-----KKLPL 180
Query: 776 TLEKMMNAETKSG-------SELKHLQYGFMGGYQFYQXXXXXXXKSVEILV--RKVSNI 826
T + + A K+G E Y +Q+ Q + + +K+ NI
Sbjct: 181 TDLQKLPAWVKNGLYLHNNPLECDCKLYQLFSHWQYRQLSSVMDFQEDLYCMHSKKLHNI 240
Query: 827 FTSIDF 832
F S+DF
Sbjct: 241 F-SLDF 245
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 54/113 (47%), Gaps = 3/113 (2%)
Query: 260 ANFSHLTALDLGDCQLQGKFPEKILQVPTLETLDLSDNPSLQGSLPHFPKNSSLRNLILF 319
+NFS L LDL C+++ + + L L L+ NP S F +SL NL+
Sbjct: 53 SNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAV 112
Query: 320 GTGFSGTLPNSIGNLENLANVDISSCNF--TGPIPTSMANLTRLFHLDFSSNH 370
T + IG L L ++++ NF + +P +NLT L H+D S N+
Sbjct: 113 ETKLASLESFPIGQLITLKKLNVAH-NFIHSCKLPAYFSNLTNLVHVDLSYNY 164
Score = 31.2 bits (69), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 49/106 (46%), Gaps = 26/106 (24%)
Query: 237 LRSLSAIRLPNNYGLSSPVPEFLANFSHLTALDLGDCQLQ----GKFPE----KIL---- 284
L SL+ +++ N + + AN ++LT LDL CQL+ G F ++L
Sbjct: 447 LTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSH 506
Query: 285 ------------QVPTLETLDLSDN--PSLQGSLPHFPKNSSLRNL 316
Q+ +L TLD S N + +G L HFPK+ + NL
Sbjct: 507 NNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNL 552
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 54/113 (47%), Gaps = 3/113 (2%)
Query: 260 ANFSHLTALDLGDCQLQGKFPEKILQVPTLETLDLSDNPSLQGSLPHFPKNSSLRNLILF 319
+NFS L LDL C+++ + + L L L+ NP S F +SL NL+
Sbjct: 48 SNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAV 107
Query: 320 GTGFSGTLPNSIGNLENLANVDISSCNF--TGPIPTSMANLTRLFHLDFSSNH 370
T + IG L L ++++ NF + +P +NLT L H+D S N+
Sbjct: 108 ETKLASLESFPIGQLITLKKLNVAH-NFIHSCKLPAYFSNLTNLVHVDLSYNY 159
Score = 31.2 bits (69), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 49/106 (46%), Gaps = 26/106 (24%)
Query: 237 LRSLSAIRLPNNYGLSSPVPEFLANFSHLTALDLGDCQLQ----GKFPE----KIL---- 284
L SL+ +++ N + + AN ++LT LDL CQL+ G F ++L
Sbjct: 442 LTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSH 501
Query: 285 ------------QVPTLETLDLSDN--PSLQGSLPHFPKNSSLRNL 316
Q+ +L TLD S N + +G L HFPK+ + NL
Sbjct: 502 NNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNL 547
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 59/225 (26%), Positives = 93/225 (41%), Gaps = 11/225 (4%)
Query: 528 EIPNWIWEFSANLVFLNLSHNLLESLQEPYFIAGVGL--LDLHSNELQGSIPYMSPNT-S 584
EI + ++ NL L L +N + + F V L L L N+L+ +P P T
Sbjct: 66 EIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMPKTLQ 124
Query: 585 YMDYSNNNFTTIPADIGNFMSGTIFFSAANNSLTGVIPQSVCNATYFSVLDLSNNSLSGT 644
+ N T + + N ++ I N L + N + + LS ++ T
Sbjct: 125 ELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKS---SGIENGAFQGMKKLSYIRIADT 181
Query: 645 IPTCLITNSSRTLGVLNLRGNSLNGTLSDRVPGICGLQILDLNGNQLEGMVPKSLANCKM 704
T + +L L+L GN + + + G+ L L L+ N + + SLAN
Sbjct: 182 NITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPH 241
Query: 705 LQVLDLGNNNFSKKFPCWLKNASSLQVLVLRSNNFSG---NISCP 746
L+ L L NN K P L + +QV+ L +NN S N CP
Sbjct: 242 LRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCP 285
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 59/225 (26%), Positives = 93/225 (41%), Gaps = 11/225 (4%)
Query: 528 EIPNWIWEFSANLVFLNLSHNLLESLQEPYFIAGVGL--LDLHSNELQGSIPYMSPNT-S 584
EI + ++ NL L L +N + + F V L L L N+L+ +P P T
Sbjct: 66 EIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMPKTLQ 124
Query: 585 YMDYSNNNFTTIPADIGNFMSGTIFFSAANNSLTGVIPQSVCNATYFSVLDLSNNSLSGT 644
+ N T + + N ++ I N L + N + + LS ++ T
Sbjct: 125 ELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKS---SGIENGAFQGMKKLSYIRIADT 181
Query: 645 IPTCLITNSSRTLGVLNLRGNSLNGTLSDRVPGICGLQILDLNGNQLEGMVPKSLANCKM 704
T + +L L+L GN + + + G+ L L L+ N + + SLAN
Sbjct: 182 NITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPH 241
Query: 705 LQVLDLGNNNFSKKFPCWLKNASSLQVLVLRSNNFSG---NISCP 746
L+ L L NN K P L + +QV+ L +NN S N CP
Sbjct: 242 LRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCP 285
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 38.9 bits (89), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 90/362 (24%), Positives = 137/362 (37%), Gaps = 27/362 (7%)
Query: 540 LVFLNLSHNLLESLQEPYFIAGVGL--LDLHSNELQG--SIPYMS-PNTSYMDYSNNNFT 594
L LNL HN L + + F+ L LDL SN + S P+ + N +D S+N +
Sbjct: 75 LKVLNLQHNELSQISDQTFVFCTNLTELDLMSNSIHKIKSNPFKNQKNLIKLDLSHNGLS 134
Query: 595 TIPADIGNFMSGTIFFSAANNSLTGVIPQSV--CNATYFSVLDLSNNSLSGTIPTCLITN 652
+ G + A N + + + + + LDLS+N L P C T
Sbjct: 135 STKLGTGVQLENLQELLLAKNKILALRSEELEFLGNSSLRKLDLSSNPLKEFSPGCFQTI 194
Query: 653 SSRTLGVLNLRGNSLNGTLSDRVP---GICGLQILDLNGNQLEGMVPKSLANCKM--LQV 707
L L L LN L++++ +Q L L NQL + + K L
Sbjct: 195 GK--LFALLLNNAQLNPHLTEKLCWELSNTSIQNLSLANNQLLATSESTFSGLKWTNLTQ 252
Query: 708 LDLGNNNFSKKFPCWLKNASSLQVLVLRSNNFSGNISCPRNNVSWPLLQIIDLASNKFSG 767
LDL NN SL+ L L NN PR+ L+ + L
Sbjct: 253 LDLSYNNLHDVGNGSFSYLPSLRYLSLEYNNIQR--LSPRSFYGLSNLRYLSLK------ 304
Query: 768 RLSKKWLLTLEKMMNAETKSGSELKHLQYGFMGGYQFYQXXXXXXXKSVEILVRKVSNIF 827
R K ++L N + S LK+L+Y M V + +S F
Sbjct: 305 RAFTKQSVSLASHPNIDDFSFQWLKYLEYLNMDDNNIPSTKSNTFTGLVSLKYLSLSKTF 364
Query: 828 TSIDFSSNNFEGPIPEEMGRFKSLYALNLSQNVLTGSIPSSFGNLEQIESLDLSMNNLSG 887
TS+ +N + L LNL++N ++ +F L Q+ LDL +N +
Sbjct: 365 TSLQTLTNETFVSLAHS-----PLLTLNLTKNHISKIANGTFSWLGQLRILDLGLNEIEQ 419
Query: 888 KI 889
K+
Sbjct: 420 KL 421
Score = 36.6 bits (83), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 41/132 (31%), Positives = 57/132 (43%), Gaps = 9/132 (6%)
Query: 587 DYSNNNFTTIPADIGNFMSGTIFFSAANNSLTGVIPQSVCNATYFSVLDLSNNSLSGTIP 646
D S+ T IP D+ S + +N L + P + + ++LD NS+S P
Sbjct: 10 DCSHLKLTHIPDDLP---SNITVLNLTHNQLRRLPPTNFTRYSQLAILDAGFNSISKLEP 66
Query: 647 T-CLITNSSRTLGVLNLRGNSLNGTLSDRVPGIC-GLQILDLNGNQLEGMVPKSLANCKM 704
C I L VLNL+ N L +SD+ C L LDL N + + N K
Sbjct: 67 ELCQIL---PLLKVLNLQHNEL-SQISDQTFVFCTNLTELDLMSNSIHKIKSNPFKNQKN 122
Query: 705 LQVLDLGNNNFS 716
L LDL +N S
Sbjct: 123 LIKLDLSHNGLS 134
Score = 35.0 bits (79), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 57/243 (23%), Positives = 90/243 (37%), Gaps = 20/243 (8%)
Query: 535 EFSANLVFLNLSHNLLESLQEPYFI--AGVGLLDLHSN---ELQGSIPYMSPNTSYMDYS 589
+ +N+ LNL+HN L L F + + +LD N +L+ + + P ++
Sbjct: 22 DLPSNITVLNLTHNQLRRLPPTNFTRYSQLAILDAGFNSISKLEPELCQILPLLKVLNLQ 81
Query: 590 NNNFTTIPADIGNFMSGTIFFSAANNSLTGVIPQSVCNATYFSVLDLSNNSLS------G 643
+N + I F + +NS+ + N LDLS+N LS G
Sbjct: 82 HNELSQISDQTFVFCTNLTELDLMSNSIHKIKSNPFKNQKNLIKLDLSHNGLSSTKLGTG 141
Query: 644 TIPTCLITNSSRTLGVLNLRGNSLNGTLSDRVPGICGLQILDLNGNQLEGMVPKSLANCK 703
L +L LR L G L+ LDL+ N L+ P
Sbjct: 142 VQLENLQELLLAKNKILALRSEEL------EFLGNSSLRKLDLSSNPLKEFSPGCFQTIG 195
Query: 704 MLQVLDLGNNNFSKKFP---CWLKNASSLQVLVLRSNNFSGNISCPRNNVSWPLLQIIDL 760
L L L N + CW + +S+Q L L +N + + W L +DL
Sbjct: 196 KLFALLLNNAQLNPHLTEKLCWELSNTSIQNLSLANNQLLATSESTFSGLKWTNLTQLDL 255
Query: 761 ASN 763
+ N
Sbjct: 256 SYN 258
Score = 30.4 bits (67), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 33/68 (48%), Gaps = 2/68 (2%)
Query: 673 DRVPGICGLQILDLNGNQLEGMVPKSLANCKMLQVLDLGNNNFSKKFPCWLKNASSLQVL 732
D +P + +L+L NQL + P + L +LD G N+ SK P + L+VL
Sbjct: 21 DDLPS--NITVLNLTHNQLRRLPPTNFTRYSQLAILDAGFNSISKLEPELCQILPLLKVL 78
Query: 733 VLRSNNFS 740
L+ N S
Sbjct: 79 NLQHNELS 86
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 38.9 bits (89), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 76/167 (45%), Gaps = 12/167 (7%)
Query: 585 YMDYSNNNFT-TIPADIGNFMS-GTIFFSAANNSLTGVIPQSVCNATYFSVLDLSNNSLS 642
++D+SNN T T+ + G+ T+ I + LD+S NS+S
Sbjct: 328 HLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVS 387
Query: 643 GTIPT--CLITNSSRTLGVLNLRGNSLNGTLSDRVPGICGLQILDLNGNQLEGMVPKSLA 700
C T ++L LN+ N L T+ +P +++LDL+ N+++ +PK +
Sbjct: 388 YDEKKGDCSWT---KSLLSLNMSSNILTDTIFRCLPP--RIKVLDLHSNKIKS-IPKQVV 441
Query: 701 NCKMLQVLDLGNNNFSKKFPCWLKNASSLQVLVLRSNNFSGNISCPR 747
+ LQ L++ +N +SLQ + L +N + + SCPR
Sbjct: 442 KLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPW--DCSCPR 486
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 37.4 bits (85), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 53/109 (48%), Gaps = 3/109 (2%)
Query: 631 FSVLDLSNNSLSGTIPTCLITNSSRTLGVLNLRGNSLNGTLSDRVPGICGLQILDLNGNQ 690
LDLS+N L ++P L+ + L VL++ N L + G+ LQ L L GN+
Sbjct: 79 LGTLDLSHNQLQ-SLP--LLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNE 135
Query: 691 LEGMVPKSLANCKMLQVLDLGNNNFSKKFPCWLKNASSLQVLVLRSNNF 739
L+ + P L L+ L L NNN ++ L +L L+L+ N+
Sbjct: 136 LKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSL 184
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 57/133 (42%), Gaps = 6/133 (4%)
Query: 538 ANLVFLNLSHNLLESLQEPYFIAGVGLLDLHSNELQGSIPYMS---PNTSYMDYSNNNFT 594
L LNL L LQ + +G LDL N+LQ S+P + P + +D S N T
Sbjct: 55 TRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT 113
Query: 595 TIPADIGNFMSGTIFFSAANNSLTGVIPQSVCNATYFSVLDLSNNSLSGTIPTCLITNSS 654
++P + N L + P + L L+NN+L+ +P L+ N
Sbjct: 114 SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT-ELPAGLL-NGL 171
Query: 655 RTLGVLNLRGNSL 667
L L L+ NSL
Sbjct: 172 ENLDTLLLQENSL 184
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 37.4 bits (85), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 44/86 (51%), Gaps = 5/86 (5%)
Query: 650 ITNSSRTLGVLNLRGNSLNGT-LSDRVPGICGLQILDLNGNQLEGMVPKSLANCKMLQVL 708
I N +L VL + GNS L D + L LDL+ QLE + P + + LQVL
Sbjct: 145 IFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVL 204
Query: 709 DLGNNNFS--KKFPCWLKNASSLQVL 732
++ +NNF FP K +SLQVL
Sbjct: 205 NMSHNNFFSLDTFP--YKCLNSLQVL 228
Score = 35.8 bits (81), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 38/85 (44%)
Query: 213 LPNLQVLSLSRCELSGPINQYLANLRSLSAIRLPNNYGLSSPVPEFLANFSHLTALDLGD 272
L NL L +S N L SL +++ N + +P+ +LT LDL
Sbjct: 125 LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQ 184
Query: 273 CQLQGKFPEKILQVPTLETLDLSDN 297
CQL+ P + +L+ L++S N
Sbjct: 185 CQLEQLSPTAFNSLSSLQVLNMSHN 209
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Query: 677 GICGLQILDLNGNQL-EGMVPKSLANCKMLQVLDLGNNNFSKKFPCWLKNASSLQVLVLR 735
G+ L++L + GN E +P + L LDL + P + SSLQVL +
Sbjct: 148 GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMS 207
Query: 736 SNNF 739
NNF
Sbjct: 208 HNNF 211
Score = 30.4 bits (67), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Query: 311 SSLRNLILFGTGFSGT-LPNSIGNLENLANVDISSCNFTGPIPTSMANLTRLFHLDFSSN 369
SSL L + G F LP+ L NL +D+S C PT+ +L+ L L+ S N
Sbjct: 150 SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHN 209
Query: 370 HF 371
+F
Sbjct: 210 NF 211
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 37.0 bits (84), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 53/109 (48%), Gaps = 3/109 (2%)
Query: 631 FSVLDLSNNSLSGTIPTCLITNSSRTLGVLNLRGNSLNGTLSDRVPGICGLQILDLNGNQ 690
LDLS+N L ++P L+ + L VL++ N L + G+ LQ L L GN+
Sbjct: 79 LGTLDLSHNQLQ-SLP--LLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNE 135
Query: 691 LEGMVPKSLANCKMLQVLDLGNNNFSKKFPCWLKNASSLQVLVLRSNNF 739
L+ + P L L+ L L NNN ++ L +L L+L+ N+
Sbjct: 136 LKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSL 184
Score = 32.7 bits (73), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 57/133 (42%), Gaps = 6/133 (4%)
Query: 538 ANLVFLNLSHNLLESLQEPYFIAGVGLLDLHSNELQGSIPYMS---PNTSYMDYSNNNFT 594
L LNL L LQ + +G LDL N+LQ S+P + P + +D S N T
Sbjct: 55 TRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT 113
Query: 595 TIPADIGNFMSGTIFFSAANNSLTGVIPQSVCNATYFSVLDLSNNSLSGTIPTCLITNSS 654
++P + N L + P + L L+NN+L+ +P L+ N
Sbjct: 114 SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT-ELPAGLL-NGL 171
Query: 655 RTLGVLNLRGNSL 667
L L L+ NSL
Sbjct: 172 ENLDTLLLQENSL 184
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 37.0 bits (84), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 53/109 (48%), Gaps = 3/109 (2%)
Query: 631 FSVLDLSNNSLSGTIPTCLITNSSRTLGVLNLRGNSLNGTLSDRVPGICGLQILDLNGNQ 690
LDLS+N L ++P L+ + L VL++ N L + G+ LQ L L GN+
Sbjct: 79 LGTLDLSHNQLQ-SLP--LLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNE 135
Query: 691 LEGMVPKSLANCKMLQVLDLGNNNFSKKFPCWLKNASSLQVLVLRSNNF 739
L+ + P L L+ L L NNN ++ L +L L+L+ N+
Sbjct: 136 LKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSL 184
Score = 33.1 bits (74), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 57/133 (42%), Gaps = 6/133 (4%)
Query: 538 ANLVFLNLSHNLLESLQEPYFIAGVGLLDLHSNELQGSIPYMS---PNTSYMDYSNNNFT 594
L LNL L LQ + +G LDL N+LQ S+P + P + +D S N T
Sbjct: 55 TRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT 113
Query: 595 TIPADIGNFMSGTIFFSAANNSLTGVIPQSVCNATYFSVLDLSNNSLSGTIPTCLITNSS 654
++P + N L + P + L L+NN+L+ +P L+ N
Sbjct: 114 SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT-ELPAGLL-NGL 171
Query: 655 RTLGVLNLRGNSL 667
L L L+ NSL
Sbjct: 172 ENLDTLLLQENSL 184
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 37.0 bits (84), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 53/109 (48%), Gaps = 3/109 (2%)
Query: 631 FSVLDLSNNSLSGTIPTCLITNSSRTLGVLNLRGNSLNGTLSDRVPGICGLQILDLNGNQ 690
LDLS+N L ++P L+ + L VL++ N L + G+ LQ L L GN+
Sbjct: 79 LGTLDLSHNQLQ-SLP--LLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNE 135
Query: 691 LEGMVPKSLANCKMLQVLDLGNNNFSKKFPCWLKNASSLQVLVLRSNNF 739
L+ + P L L+ L L NNN ++ L +L L+L+ N+
Sbjct: 136 LKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSL 184
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 57/133 (42%), Gaps = 6/133 (4%)
Query: 538 ANLVFLNLSHNLLESLQEPYFIAGVGLLDLHSNELQGSIPYMS---PNTSYMDYSNNNFT 594
L LNL L LQ + +G LDL N+LQ S+P + P + +D S N T
Sbjct: 55 TRLTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT 113
Query: 595 TIPADIGNFMSGTIFFSAANNSLTGVIPQSVCNATYFSVLDLSNNSLSGTIPTCLITNSS 654
++P + N L + P + L L+NN+L+ +P L+ N
Sbjct: 114 SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT-ELPAGLL-NGL 171
Query: 655 RTLGVLNLRGNSL 667
L L L+ NSL
Sbjct: 172 ENLDTLLLQENSL 184
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 37.0 bits (84), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 53/109 (48%), Gaps = 3/109 (2%)
Query: 631 FSVLDLSNNSLSGTIPTCLITNSSRTLGVLNLRGNSLNGTLSDRVPGICGLQILDLNGNQ 690
LDLS+N L ++P L+ + L VL++ N L + G+ LQ L L GN+
Sbjct: 80 LGTLDLSHNQLQ-SLP--LLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNE 136
Query: 691 LEGMVPKSLANCKMLQVLDLGNNNFSKKFPCWLKNASSLQVLVLRSNNF 739
L+ + P L L+ L L NNN ++ L +L L+L+ N+
Sbjct: 137 LKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSL 185
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 57/133 (42%), Gaps = 6/133 (4%)
Query: 538 ANLVFLNLSHNLLESLQEPYFIAGVGLLDLHSNELQGSIPYMS---PNTSYMDYSNNNFT 594
L LNL L LQ + +G LDL N+LQ S+P + P + +D S N T
Sbjct: 56 TRLTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT 114
Query: 595 TIPADIGNFMSGTIFFSAANNSLTGVIPQSVCNATYFSVLDLSNNSLSGTIPTCLITNSS 654
++P + N L + P + L L+NN+L+ +P L+ N
Sbjct: 115 SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT-ELPAGLL-NGL 172
Query: 655 RTLGVLNLRGNSL 667
L L L+ NSL
Sbjct: 173 ENLDTLLLQENSL 185
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 37.0 bits (84), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 62/196 (31%), Positives = 79/196 (40%), Gaps = 19/196 (9%)
Query: 189 LRELHLD-NVDLFASGTDWCKALSFLPNLQVLSLSR--CELSGPINQYLANLRSLSAIRL 245
LR+L++ N+ GT + L L NLQ L LS E S N L NLR L + L
Sbjct: 326 LRDLYIKGNMRKLDLGT---RCLEKLENLQKLDLSHSDIEASDCCNLQLKNLRHLQYLNL 382
Query: 246 PNNYGLSSPVPEFLANFSHLTALDLGDCQLQGKFPEKILQ-VPTLETLDLSDNPSLQGSL 304
N L F L LD+ L K P Q + L L+LS + L S
Sbjct: 383 SYNEPLGLEDQAF-KECPQLELLDVAFTHLHVKAPHSPFQNLHLLRVLNLS-HCLLDTSN 440
Query: 305 PHFPKN-SSLRNLILFGTGFSG------TLPNSIGNLENLANVDISSCNFTGPIPTSMAN 357
H LR+L L G F L +G+LE L +SSCN +
Sbjct: 441 QHLLAGLQDLRHLNLQGNSFQDGSISKTNLLQMVGSLEILI---LSSCNLLSIDQQAFHG 497
Query: 358 LTRLFHLDFSSNHFSG 373
L + HLD S N +G
Sbjct: 498 LRNVNHLDLSHNSLTG 513
Score = 30.8 bits (68), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 53/201 (26%), Positives = 85/201 (42%), Gaps = 9/201 (4%)
Query: 183 LQNLTELRELHLDNVDLFASGTDWCK-ALSFLPNLQVLSLSRCELSGPINQYLANLRSLS 241
L+ L L++L L + D+ AS D C L L +LQ L+LS E G +Q L
Sbjct: 345 LEKLENLQKLDLSHSDIEAS--DCCNLQLKNLRHLQYLNLSYNEPLGLEDQAFKECPQLE 402
Query: 242 AIRLP-NNYGLSSPVPEFLANFSHLTALDLGDCQLQGKFPEKILQVPTLETLDLSDNPSL 300
+ + + + +P F N L L+L C L + + L L+L N
Sbjct: 403 LLDVAFTHLHVKAPHSPF-QNLHLLRVLNLSHCLLDTSNQHLLAGLQDLRHLNLQGNSFQ 461
Query: 301 QGSLPH---FPKNSSLRNLILFGTGFSGTLPNSIGNLENLANVDISSCNFTGPIPTSMAN 357
GS+ SL LIL + L N+ ++D+S + TG ++++
Sbjct: 462 DGSISKTNLLQMVGSLEILILSSCNLLSIDQQAFHGLRNVNHLDLSHNSLTGDSMDALSH 521
Query: 358 LTRLFHLDFSSNHFSGPIPSL 378
L L+ L+ +SN+ P L
Sbjct: 522 LKGLY-LNMASNNIRIIPPHL 541
Score = 30.0 bits (66), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 73/285 (25%), Positives = 124/285 (43%), Gaps = 37/285 (12%)
Query: 621 IPQSVCNATYFSVLDLSNNSLSGTIPTCLITNSSRTLGV--LNLRGNSLNGTLSDRVPGI 678
IP ++ N T VL+ S N L PT T SR + + L+L +N D
Sbjct: 26 IPDTLPNTT--EVLEFSFNFL----PTIQNTTFSRLINLIFLDLTRCQINWVHEDTFQSH 79
Query: 679 CGLQILDLNGNQLEGMVPKSLANCKMLQVLDLGNNNFSKKFPCWLKNASSLQVLVLRSNN 738
L + L GN L M SL K L+ L L S + N +L+ L L SN+
Sbjct: 80 HQLNTIVLTGNPLIFMAETSLTGPKFLKHLFLTQTGISNLEFIPVHNLENLESLHLGSNH 139
Query: 739 FSGNISCPRNNVSWPL--LQIIDLASNKFSGRLSKKWLLTLEKMMNAETK-SGSELKHLQ 795
S I+ P N +P L+++D +N +S+K +LE+ N +G+++K ++
Sbjct: 140 ISS-INLPEN---FPTQNLKVLDFQNNAIH-YISRKDTNSLEQATNLSLNFNGNDIKGIE 194
Query: 796 YG-FMGGYQFYQXXXXXXXKSVEILVRKVSN---------IFTSID---FSSNNFEGPIP 842
G F+ + +Q ++ I+ + + N F D +S FEG
Sbjct: 195 PGAFIS--KIFQSLKFGGSLNLFIIFKGLQNSTLQSLWLGTFEDTDDQYLTSATFEGLCD 252
Query: 843 EEMGRFKSLYALNLSQNVLTGSIPSSFGNLEQIESLDLSMNNLSG 887
S+ ++NL ++ + S+F +++ LDL+ +L+G
Sbjct: 253 ------MSVESINLQKHRFSDLSSSTFRCFTRVQELDLTAAHLNG 291
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 36.6 bits (83), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 56/122 (45%), Gaps = 15/122 (12%)
Query: 458 MNFLDLSGNRLEGPIPISIFFELRNLLTLDLSSNKFSRLKLASSKPRGTPNXXXXXXXXX 517
+ +L L GN+L IS EL NL L L+ N+ L P G +
Sbjct: 65 VRYLALGGNKLHD---ISALKELTNLTYLILTGNQLQSL------PNGVFDKLTNLKELV 115
Query: 518 XXXXXXXISGEIPNWIWEFSANLVFLNLSHNLLESLQEPYF--IAGVGLLDLHSNELQGS 575
+P+ +++ NL +LNL+HN L+SL + F + + LDL N+LQ S
Sbjct: 116 LVENQLQ---SLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQ-S 171
Query: 576 IP 577
+P
Sbjct: 172 LP 173
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 36.6 bits (83), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 56/138 (40%), Gaps = 4/138 (2%)
Query: 605 SGTIFFSAANNSLTGVIPQSVCNATYFSVLDLSNNSLSGTIPTCLITNSSRTLGVLNLRG 664
S F + N T + Q L L N L L+T + +L L++
Sbjct: 353 SSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSL 412
Query: 665 NSLNGTLSDRVPGIC-GLQILDLNGNQLEGMVPKSLANCKMLQVLDLGNNNFSKKFPCWL 723
NSLN DR + +L+L+ N L G V + L ++VLDL NN P +
Sbjct: 413 NSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRI-MSIPKDV 469
Query: 724 KNASSLQVLVLRSNNFSG 741
+ +LQ L + SN
Sbjct: 470 THLQALQELNVASNQLKS 487
Score = 36.2 bits (82), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 60/122 (49%), Gaps = 10/122 (8%)
Query: 627 NATYFSVLDLSNNSLSGTI--PTCLITNSSRTLGVLNLRGNSLNGTLSDRVPGICGLQIL 684
N + LD+S NSL+ TC S + VLNL N L G++ +P +++L
Sbjct: 401 NMSSLETLDVSLNSLNSHAYDRTCAWAES---ILVLNLSSNMLTGSVFRCLPP--KVKVL 455
Query: 685 DLNGNQLEGMVPKSLANCKMLQVLDLGNNNFSKKFPCWLKNASSLQVLVLRSNNFSGNIS 744
DL+ N++ +PK + + + LQ L++ +N +SLQ + L N + + +
Sbjct: 456 DLHNNRIMS-IPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPW--DCT 512
Query: 745 CP 746
CP
Sbjct: 513 CP 514
Score = 29.6 bits (65), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 40/92 (43%), Gaps = 5/92 (5%)
Query: 536 FSANLVFLNLSHNLLESLQEPYFIAGVGL--LDLHSNELQGSIPYMSPNTSYMDYSNNNF 593
F + L L LSHN + SL F+ L LD+ N LQ + ++D S N+F
Sbjct: 74 FLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISCCPMASLRHLDLSFNDF 133
Query: 594 TTIPA--DIGNFMSGTIF-FSAANNSLTGVIP 622
+P + GN T SAA ++P
Sbjct: 134 DVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLP 165
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 35.8 bits (81), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 53/109 (48%), Gaps = 3/109 (2%)
Query: 631 FSVLDLSNNSLSGTIPTCLITNSSRTLGVLNLRGNSLNGTLSDRVPGICGLQILDLNGNQ 690
LDLS+N L ++P L+ + L VL++ N L + G+ LQ L L GN+
Sbjct: 79 LGTLDLSHNQLQ-SLP--LLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNE 135
Query: 691 LEGMVPKSLANCKMLQVLDLGNNNFSKKFPCWLKNASSLQVLVLRSNNF 739
L+ + P L L+ L L NN+ ++ L +L L+L+ N+
Sbjct: 136 LKTLPPGLLTPTPKLEKLSLANNDLTELPAGLLNGLENLDTLLLQENSL 184
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 56/133 (42%), Gaps = 6/133 (4%)
Query: 538 ANLVFLNLSHNLLESLQEPYFIAGVGLLDLHSNELQGSIPYMS---PNTSYMDYSNNNFT 594
L LNL L LQ + +G LDL N+LQ S+P + P + +D S N T
Sbjct: 55 TRLTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT 113
Query: 595 TIPADIGNFMSGTIFFSAANNSLTGVIPQSVCNATYFSVLDLSNNSLSGTIPTCLITNSS 654
++P + N L + P + L L+NN L+ +P L+ N
Sbjct: 114 SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNDLT-ELPAGLL-NGL 171
Query: 655 RTLGVLNLRGNSL 667
L L L+ NSL
Sbjct: 172 ENLDTLLLQENSL 184
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 35.4 bits (80), Expect = 0.16, Method: Composition-based stats.
Identities = 27/90 (30%), Positives = 40/90 (44%), Gaps = 1/90 (1%)
Query: 653 SSRTLGVLNLRGNSLNGTLSDRVPGICGLQILDLNGN-QLEGMVPKSLANCKMLQVLDLG 711
S R L +L L N+L G + G+ L+ LDL+ N QL + P + L L L
Sbjct: 53 SCRNLTILWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLRVVDPTTFRGLGHLHTLHLD 112
Query: 712 NNNFSKKFPCWLKNASSLQVLVLRSNNFSG 741
+ P + ++LQ L L+ NN
Sbjct: 113 RCGLQELGPGLFRGLAALQYLYLQDNNLQA 142
Score = 34.3 bits (77), Expect = 0.39, Method: Composition-based stats.
Identities = 43/160 (26%), Positives = 63/160 (39%), Gaps = 4/160 (2%)
Query: 215 NLQVLSLSRCELSGPINQYLANLRSLSAIRLPNNYGLSSPVPEFLANFSHLTALDLGDCQ 274
NL +L L L+G L L + L +N L P HL L L C
Sbjct: 56 NLTILWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLRVVDPTTFRGLGHLHTLHLDRCG 115
Query: 275 LQGKFPEKILQVPTLETLDLSDNPSLQGSLPH--FPKNSSLRNLILFGTGFSGTLPNSIG 332
LQ P + L+ L L DN +LQ +LP F +L +L L G ++
Sbjct: 116 LQELGPGLFRGLAALQYLYLQDN-NLQ-ALPDNTFRDLGNLTHLFLHGNRIPSVPEHAFR 173
Query: 333 NLENLANVDISSCNFTGPIPTSMANLTRLFHLDFSSNHFS 372
L +L + + + P + +L RL L +N+ S
Sbjct: 174 GLHSLDRLLLHQNHVARVHPHAFRDLGRLMTLYLFANNLS 213
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 35.0 bits (79), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 52/109 (47%), Gaps = 3/109 (2%)
Query: 631 FSVLDLSNNSLSGTIPTCLITNSSRTLGVLNLRGNSLNGTLSDRVPGICGLQILDLNGNQ 690
LDLS+N L ++P L+ + L VL++ N L + G+ LQ L L GN+
Sbjct: 79 LGTLDLSHNQLQ-SLP--LLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNE 135
Query: 691 LEGMVPKSLANCKMLQVLDLGNNNFSKKFPCWLKNASSLQVLVLRSNNF 739
L+ + P L L+ L L NN ++ L +L L+L+ N+
Sbjct: 136 LKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSL 184
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 56/133 (42%), Gaps = 6/133 (4%)
Query: 538 ANLVFLNLSHNLLESLQEPYFIAGVGLLDLHSNELQGSIPYMS---PNTSYMDYSNNNFT 594
L LNL L LQ + +G LDL N+LQ S+P + P + +D S N T
Sbjct: 55 TRLTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT 113
Query: 595 TIPADIGNFMSGTIFFSAANNSLTGVIPQSVCNATYFSVLDLSNNSLSGTIPTCLITNSS 654
++P + N L + P + L L+NN L+ +P L+ N
Sbjct: 114 SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLT-ELPAGLL-NGL 171
Query: 655 RTLGVLNLRGNSL 667
L L L+ NSL
Sbjct: 172 ENLDTLLLQENSL 184
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 35.0 bits (79), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 52/109 (47%), Gaps = 3/109 (2%)
Query: 631 FSVLDLSNNSLSGTIPTCLITNSSRTLGVLNLRGNSLNGTLSDRVPGICGLQILDLNGNQ 690
LDLS+N L ++P L+ + L VL++ N L + G+ LQ L L GN+
Sbjct: 79 LGTLDLSHNQLQ-SLP--LLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNE 135
Query: 691 LEGMVPKSLANCKMLQVLDLGNNNFSKKFPCWLKNASSLQVLVLRSNNF 739
L+ + P L L+ L L NN ++ L +L L+L+ N+
Sbjct: 136 LKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSL 184
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 56/133 (42%), Gaps = 6/133 (4%)
Query: 538 ANLVFLNLSHNLLESLQEPYFIAGVGLLDLHSNELQGSIPYMS---PNTSYMDYSNNNFT 594
L LNL L LQ + +G LDL N+LQ S+P + P + +D S N T
Sbjct: 55 TRLTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT 113
Query: 595 TIPADIGNFMSGTIFFSAANNSLTGVIPQSVCNATYFSVLDLSNNSLSGTIPTCLITNSS 654
++P + N L + P + L L+NN L+ +P L+ N
Sbjct: 114 SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLT-ELPAGLL-NGL 171
Query: 655 RTLGVLNLRGNSL 667
L L L+ NSL
Sbjct: 172 ENLDTLLLQENSL 184
>pdb|3O53|A Chain A, Crystal Structure Of Lrim1 Leucine-Rich Repeat Domain
pdb|3O53|B Chain B, Crystal Structure Of Lrim1 Leucine-Rich Repeat Domain
Length = 317
Score = 35.0 bits (79), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 44/158 (27%), Positives = 71/158 (44%), Gaps = 8/158 (5%)
Query: 540 LVFLNLSHNLLESLQEPYFIAGVGLLDLHSNELQGSIPYMSPNTSYMDYSNNNFTTIPAD 599
L LNLS N+L + ++ + LDL++N +Q + + P+ + +NNN + +
Sbjct: 60 LELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELL--VGPSIETLHAANNNISRVSCS 117
Query: 600 IGNFMSGTIFFSAANNSLTGVIPQSVCNATYFSVLDLSNNSLSGTIPTCLITNSSRTLGV 659
G G ANN +T + + LDL N + T+ + SS TL
Sbjct: 118 RG---QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEID-TVNFAELAASSDTLEH 173
Query: 660 LNLRGNSLNGTLSDRVPGICGLQILDLNGNQLEGMVPK 697
LNL+ N + V L+ LDL+ N+L M P+
Sbjct: 174 LNLQYNFIYDVKGQVV--FAKLKTLDLSSNKLAFMGPE 209
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 35.0 bits (79), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 52/109 (47%), Gaps = 3/109 (2%)
Query: 631 FSVLDLSNNSLSGTIPTCLITNSSRTLGVLNLRGNSLNGTLSDRVPGICGLQILDLNGNQ 690
LDLS+N L ++P L+ + L VL++ N L + G+ LQ L L GN+
Sbjct: 79 LGTLDLSHNQLQ-SLP--LLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNE 135
Query: 691 LEGMVPKSLANCKMLQVLDLGNNNFSKKFPCWLKNASSLQVLVLRSNNF 739
L+ + P L L+ L L NN ++ L +L L+L+ N+
Sbjct: 136 LKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSL 184
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 56/133 (42%), Gaps = 6/133 (4%)
Query: 538 ANLVFLNLSHNLLESLQEPYFIAGVGLLDLHSNELQGSIPYMS---PNTSYMDYSNNNFT 594
L LNL L LQ + +G LDL N+LQ S+P + P + +D S N T
Sbjct: 55 TRLTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT 113
Query: 595 TIPADIGNFMSGTIFFSAANNSLTGVIPQSVCNATYFSVLDLSNNSLSGTIPTCLITNSS 654
++P + N L + P + L L+NN L+ +P L+ N
Sbjct: 114 SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLT-ELPAGLL-NGL 171
Query: 655 RTLGVLNLRGNSL 667
L L L+ NSL
Sbjct: 172 ENLDTLLLQENSL 184
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 35.0 bits (79), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 52/109 (47%), Gaps = 3/109 (2%)
Query: 631 FSVLDLSNNSLSGTIPTCLITNSSRTLGVLNLRGNSLNGTLSDRVPGICGLQILDLNGNQ 690
LDLS+N L ++P L+ + L VL++ N L + G+ LQ L L GN+
Sbjct: 79 LGTLDLSHNQLQ-SLP--LLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNE 135
Query: 691 LEGMVPKSLANCKMLQVLDLGNNNFSKKFPCWLKNASSLQVLVLRSNNF 739
L+ + P L L+ L L NN ++ L +L L+L+ N+
Sbjct: 136 LKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSL 184
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 56/133 (42%), Gaps = 6/133 (4%)
Query: 538 ANLVFLNLSHNLLESLQEPYFIAGVGLLDLHSNELQGSIPYMS---PNTSYMDYSNNNFT 594
L LNL L LQ + +G LDL N+LQ S+P + P + +D S N T
Sbjct: 55 TRLTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT 113
Query: 595 TIPADIGNFMSGTIFFSAANNSLTGVIPQSVCNATYFSVLDLSNNSLSGTIPTCLITNSS 654
++P + N L + P + L L+NN L+ +P L+ N
Sbjct: 114 SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLT-ELPAGLL-NGL 171
Query: 655 RTLGVLNLRGNSL 667
L L L+ NSL
Sbjct: 172 ENLDTLLLQENSL 184
>pdb|3OJA|A Chain A, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 487
Score = 34.7 bits (78), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 44/158 (27%), Positives = 71/158 (44%), Gaps = 8/158 (5%)
Query: 540 LVFLNLSHNLLESLQEPYFIAGVGLLDLHSNELQGSIPYMSPNTSYMDYSNNNFTTIPAD 599
L LNLS N+L + ++ + LDL++N +Q + + P+ + +NNN + +
Sbjct: 60 LELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELL--VGPSIETLHAANNNISRVSCS 117
Query: 600 IGNFMSGTIFFSAANNSLTGVIPQSVCNATYFSVLDLSNNSLSGTIPTCLITNSSRTLGV 659
G G ANN +T + + LDL N + T+ + SS TL
Sbjct: 118 RG---QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEID-TVNFAELAASSDTLEH 173
Query: 660 LNLRGNSLNGTLSDRVPGICGLQILDLNGNQLEGMVPK 697
LNL+ N + V L+ LDL+ N+L M P+
Sbjct: 174 LNLQYNFIYDVKGQVV--FAKLKTLDLSSNKLAFMGPE 209
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 34.3 bits (77), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
Query: 814 KSVEILVRKVSNIFTSIDFSSNNFEGPIPEEMGRFKSLYALNLSQNVLTGSIPSSFGNLE 873
K +++L + + T + N F +P+E+ +K L ++LS N ++ SF N+
Sbjct: 20 KGLKVLPKGIPRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMT 78
Query: 874 QIESLDLSMNNL 885
Q+ +L LS N L
Sbjct: 79 QLLTLILSYNRL 90
Score = 31.2 bits (69), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 684 LDLNGNQLEGMVPKSLANCKMLQVLDLGNNNFSKKFPCWLKNASSLQVLVLRSNNF 739
L L+GNQ +VPK L+N K L ++DL NN S N + L L+L N
Sbjct: 36 LYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL 90
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 34.3 bits (77), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 42/131 (32%), Positives = 63/131 (48%), Gaps = 13/131 (9%)
Query: 624 SVCNATYFSVLDLSNNSLSGTIPTCLITNSSRTLGVLNLRGNSLNGTLSDRVPGICGLQI 683
++ + T + LDL+NN +S P +T L L L N ++ + G+ L
Sbjct: 234 TLASLTNLTDLDLANNQISNLAPLSGLTK----LTELKLGANQISNI--SPLAGLTALTN 287
Query: 684 LDLNGNQLEGMVPKSLANCKMLQVLDLGNNNFSKKFPCWLKNASSLQVLVLRSNNFSGNI 743
L+LN NQLE + P ++N K L L L NN S P + + LQ L SNN ++
Sbjct: 288 LELNENQLEDISP--ISNLKNLTYLTLYFNNISDISPV--SSLTKLQRLFF-SNNKVSDV 342
Query: 744 SCPRN--NVSW 752
S N N++W
Sbjct: 343 SSLANLTNINW 353
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 33.9 bits (76), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 42/131 (32%), Positives = 63/131 (48%), Gaps = 13/131 (9%)
Query: 624 SVCNATYFSVLDLSNNSLSGTIPTCLITNSSRTLGVLNLRGNSLNGTLSDRVPGICGLQI 683
++ + T + LDL+NN +S P +T L L L N ++ + G+ L
Sbjct: 233 TLASLTNLTDLDLANNQISNLAPLSGLTK----LTELKLGANQISNI--SPLAGLTALTN 286
Query: 684 LDLNGNQLEGMVPKSLANCKMLQVLDLGNNNFSKKFPCWLKNASSLQVLVLRSNNFSGNI 743
L+LN NQLE + P ++N K L L L NN S P + + LQ L SNN ++
Sbjct: 287 LELNENQLEDISP--ISNLKNLTYLTLYFNNISDISPV--SSLTKLQRLFF-SNNKVSDV 341
Query: 744 SCPRN--NVSW 752
S N N++W
Sbjct: 342 SSLANLTNINW 352
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 33.9 bits (76), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 78/350 (22%), Positives = 132/350 (37%), Gaps = 51/350 (14%)
Query: 576 IPYMSPNTSYMDYSNNNFTTIPADIGNFMSGTIFFSAA---------NNSLTGVIPQSVC 626
+P + + +Y+D S N+ + + + F NN+ G+ +
Sbjct: 25 VPELPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIIL 84
Query: 627 NATYFSVLDLSNNSLSGTIPTCLITNSSRTLGVLNLRGNSLNGTLSDRVPGICGLQILDL 686
Y L L + +G L TL NL G L+G + L++L L
Sbjct: 85 KLDYNQFLQLETGAFNG-----LANLEVLTLTQCNLDGAVLSGNF---FKPLTSLEMLVL 136
Query: 687 NGNQLEGMVPKSL-ANCKMLQVLDLGNNNFSKKFPCWLKNASSLQVLVLRSNNFS----- 740
N ++ + P S N + VLDL N L N +LR ++ +
Sbjct: 137 RDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMN 196
Query: 741 ----GNISC--PRNNVSWPLLQIIDLASNKFSGRLSKKWLLTLEK------MMNAETKSG 788
G C P N S + +DL+ N F ++K++ + +++ G
Sbjct: 197 EYWLGWEKCGNPFKNTS---ITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMG 253
Query: 789 SELKHLQYGFMGGYQFYQXXXXXXXKSVEI-------LVRKVSNIFTSID---FSSNNFE 838
S H + + F + K+ ++ L++ V + FT ++ + N
Sbjct: 254 SSFGHTNFKDPDNFTF-KGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEIN 312
Query: 839 GPIPEEMGRFKSLYALNLSQNVLTGSIPSS-FGNLEQIESLDLSMNNLSG 887
L LNLSQN L GSI S F NL+++E LDLS N++
Sbjct: 313 KIDDNAFWGLTHLLKLNLSQNFL-GSIDSRMFENLDKLEVLDLSYNHIRA 361
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 33.5 bits (75), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 41/131 (31%), Positives = 63/131 (48%), Gaps = 13/131 (9%)
Query: 624 SVCNATYFSVLDLSNNSLSGTIPTCLITNSSRTLGVLNLRGNSLNGTLSDRVPGICGLQI 683
++ + T + LDL+NN +S P +T L L L N ++ + G+ L
Sbjct: 237 TLASLTNLTDLDLANNQISNLAPLSGLTK----LTELKLGANQISNI--SPLAGLTALTN 290
Query: 684 LDLNGNQLEGMVPKSLANCKMLQVLDLGNNNFSKKFPCWLKNASSLQVLVLRSNNFSGNI 743
L+LN NQLE + P ++N K L L L NN S P + + LQ L +N S ++
Sbjct: 291 LELNENQLEDISP--ISNLKNLTYLTLYFNNISDISPV--SSLTKLQRLFFANNKVS-DV 345
Query: 744 SCPRN--NVSW 752
S N N++W
Sbjct: 346 SSLANLTNINW 356
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 33.1 bits (74), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 41/131 (31%), Positives = 63/131 (48%), Gaps = 13/131 (9%)
Query: 624 SVCNATYFSVLDLSNNSLSGTIPTCLITNSSRTLGVLNLRGNSLNGTLSDRVPGICGLQI 683
++ + T + LDL+NN +S P +T L L L N ++ + G+ L
Sbjct: 234 TLASLTNLTDLDLANNQISNLAPLSGLTK----LTELKLGANQISNI--SPLAGLTALTN 287
Query: 684 LDLNGNQLEGMVPKSLANCKMLQVLDLGNNNFSKKFPCWLKNASSLQVLVLRSNNFSGNI 743
L+LN NQLE + P ++N K L L L NN S P + + LQ L +N S ++
Sbjct: 288 LELNENQLEDISP--ISNLKNLTYLTLYFNNISDISPV--SSLTKLQRLFFYNNKVS-DV 342
Query: 744 SCPRN--NVSW 752
S N N++W
Sbjct: 343 SSLANLTNINW 353
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 33.1 bits (74), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 50/231 (21%), Positives = 90/231 (38%), Gaps = 40/231 (17%)
Query: 535 EFSANLVFLNLSHNLLESLQEPYFIAGVGLLDLHSNELQGSI---------PYMSPNTSY 585
+FS+N +FL H L EP + L +N L + P+ +
Sbjct: 154 DFSSNQIFLVCEHEL-----EPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEI 208
Query: 586 MDYSNNNFTTIPADI-GNFMSGTIFFSAANNSLTGVIPQSVCNATY--FSVLDLSNNSLS 642
+D S N +T DI GNF + + + + + ++ + A + ++ D N+ +
Sbjct: 209 LDVSGNGWT---VDITGNFSNAI----SKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFA 261
Query: 643 GTIPTCL----------------ITNSSRTLGVLNLRGNSLNGTLSDRVPGICGLQILDL 686
G + + + + + L VLNL N +N + G+ LQ+L+L
Sbjct: 262 GLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNL 321
Query: 687 NGNQLEGMVPKSLANCKMLQVLDLGNNNFSKKFPCWLKNASSLQVLVLRSN 737
+ N L + + + +DL N+ + K LQ L LR N
Sbjct: 322 SYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDN 372
Score = 30.0 bits (66), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 61/224 (27%), Positives = 93/224 (41%), Gaps = 37/224 (16%)
Query: 533 IWEFSANLVFLNLSHNLLESLQEPYF--IAGVGLLDLHSN---ELQGSIPYMSPNTSYMD 587
++E +L LNL++N + + + F + + +L+L N EL S Y P +Y+D
Sbjct: 285 VFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYID 344
Query: 588 YSNNNFTTIPADIGNFMSGTIFFSAANNSLTGV--IPQSVCNATYFSVLD--LSNNSLSG 643
N+ I F+ +N+LT + IP S+ D LS N L
Sbjct: 345 LQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIP---------SIPDIFLSGNKLV- 394
Query: 644 TIPTCLITNSSRTLGVLNLRGNSLNG----TLSDRVPGICGLQILDLNGNQLEGMV-PKS 698
T+P + T +++L N L RVP LQIL LN N+ ++
Sbjct: 395 TLPKI-----NLTANLIHLSENRLENLDILYFLLRVP---HLQILILNQNRFSSCSGDQT 446
Query: 699 LANCKMLQVLDLGNNNFSKKFP---CW--LKNASSLQVLVLRSN 737
+ L+ L LG N + CW + S LQVL L N
Sbjct: 447 PSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHN 490
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 33.1 bits (74), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 41/131 (31%), Positives = 63/131 (48%), Gaps = 13/131 (9%)
Query: 624 SVCNATYFSVLDLSNNSLSGTIPTCLITNSSRTLGVLNLRGNSLNGTLSDRVPGICGLQI 683
++ + T + LDL+NN +S P +T L L L N ++ + G+ L
Sbjct: 238 TLASLTNLTDLDLANNQISNLAPLSGLTK----LTELKLGANQISNI--SPLAGLTALTN 291
Query: 684 LDLNGNQLEGMVPKSLANCKMLQVLDLGNNNFSKKFPCWLKNASSLQVLVLRSNNFSGNI 743
L+LN NQLE + P ++N K L L L NN S P + + LQ L +N S ++
Sbjct: 292 LELNENQLEDISP--ISNLKNLTYLTLYFNNISDISPV--SSLTKLQRLFFYNNKVS-DV 346
Query: 744 SCPRN--NVSW 752
S N N++W
Sbjct: 347 SSLANLTNINW 357
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 33.1 bits (74), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 41/131 (31%), Positives = 63/131 (48%), Gaps = 13/131 (9%)
Query: 624 SVCNATYFSVLDLSNNSLSGTIPTCLITNSSRTLGVLNLRGNSLNGTLSDRVPGICGLQI 683
++ + T + LDL+NN +S P +T L L L N ++ + G+ L
Sbjct: 234 TLASLTNLTDLDLANNQISNLAPLSGLTK----LTELKLGANQISNI--SPLAGLTALTN 287
Query: 684 LDLNGNQLEGMVPKSLANCKMLQVLDLGNNNFSKKFPCWLKNASSLQVLVLRSNNFSGNI 743
L+LN NQLE + P ++N K L L L NN S P + + LQ L +N S ++
Sbjct: 288 LELNENQLEDISP--ISNLKNLTYLTLYFNNISDISPV--SSLTKLQRLFFYNNKVS-DV 342
Query: 744 SCPRN--NVSW 752
S N N++W
Sbjct: 343 SSLANLTNINW 353
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 33.1 bits (74), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 41/131 (31%), Positives = 63/131 (48%), Gaps = 13/131 (9%)
Query: 624 SVCNATYFSVLDLSNNSLSGTIPTCLITNSSRTLGVLNLRGNSLNGTLSDRVPGICGLQI 683
++ + T + LDL+NN +S P +T L L L N ++ + G+ L
Sbjct: 233 TLASLTNLTDLDLANNQISNLAPLSGLTK----LTELKLGANQISNI--SPLAGLTALTN 286
Query: 684 LDLNGNQLEGMVPKSLANCKMLQVLDLGNNNFSKKFPCWLKNASSLQVLVLRSNNFSGNI 743
L+LN NQLE + P ++N K L L L NN S P + + LQ L +N S ++
Sbjct: 287 LELNENQLEDISP--ISNLKNLTYLTLYFNNISDISPV--SSLTKLQRLFFYNNKVS-DV 341
Query: 744 SCPRN--NVSW 752
S N N++W
Sbjct: 342 SSLANLTNINW 352
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 32.7 bits (73), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 55/143 (38%), Gaps = 9/143 (6%)
Query: 201 ASGTDWCKALSFLPNLQVLSLSRCELSGPINQYLANLRSLSAIRLPNNYGLSSPVPEFLA 260
AS T C + + L L++ P N + NL RLP
Sbjct: 1 ASSTTKCTVSHEVADCSHLKLTQVPDDLPTNITVLNLTHNQLRRLP---------AANFT 51
Query: 261 NFSHLTALDLGDCQLQGKFPEKILQVPTLETLDLSDNPSLQGSLPHFPKNSSLRNLILFG 320
+S LT+LD+G + PE ++P L+ L+L N Q S F ++L L L
Sbjct: 52 RYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMS 111
Query: 321 TGFSGTLPNSIGNLENLANVDIS 343
N +NL +D+S
Sbjct: 112 NSIQKIKNNPFVKQKNLITLDLS 134
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 55/143 (38%), Gaps = 9/143 (6%)
Query: 201 ASGTDWCKALSFLPNLQVLSLSRCELSGPINQYLANLRSLSAIRLPNNYGLSSPVPEFLA 260
AS T C + + L L++ P N + NL RLP
Sbjct: 6 ASSTTKCTVSHEVADCSHLKLTQVPDDLPTNITVLNLTHNQLRRLP---------AANFT 56
Query: 261 NFSHLTALDLGDCQLQGKFPEKILQVPTLETLDLSDNPSLQGSLPHFPKNSSLRNLILFG 320
+S LT+LD+G + PE ++P L+ L+L N Q S F ++L L L
Sbjct: 57 RYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMS 116
Query: 321 TGFSGTLPNSIGNLENLANVDIS 343
N +NL +D+S
Sbjct: 117 NSIQKIKNNPFVKQKNLITLDLS 139
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 52/189 (27%), Positives = 76/189 (40%), Gaps = 26/189 (13%)
Query: 183 LQNLTELRELHLDNVDLFASGTDWCK-ALSFLPNLQVLSLSRCELSGPINQYLANLRSLS 241
L+ L L+ L L + D+ AS D C L L +LQ L+LS E G +Q L
Sbjct: 343 LEKLGNLQTLDLSHNDIEAS--DCCSLQLKNLSHLQTLNLSHNEPLGLQSQAFKECPQLE 400
Query: 242 AIRLP-NNYGLSSPVPEFLANFSHLTALDLGDCQLQGKFPEKILQVPTLETLDLSDNPSL 300
+ L +++P F N L L+L C L + +P L L+L N
Sbjct: 401 LLDLAFTRLHINAPQSPF-QNLHFLQVLNLTYCFLDTSNQHLLAGLPVLRHLNLKGN--- 456
Query: 301 QGSLPHFPKNSSLRNLILFGTGFSGTLPNSIGNLENLANVDISSCNFTGPIPTSMANLTR 360
HF GT L ++G+LE L +SSC + +L +
Sbjct: 457 -----HFQD----------GTITKTNLLQTVGSLEVLI---LSSCGLLSIDQQAFHSLGK 498
Query: 361 LFHLDFSSN 369
+ H+D S N
Sbjct: 499 MSHVDLSHN 507
Score = 31.6 bits (70), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 46/110 (41%), Gaps = 10/110 (9%)
Query: 265 LTALDLGDCQLQGKFPEKILQVPTLETLDLSDNPSLQGSLPHFPKNSSLRNLILFGTGFS 324
LT LDL CQ+ + L TL L+ NP + + SL++L L TG S
Sbjct: 56 LTFLDLTRCQINWIHEDTFQSHHQLSTLVLTGNPLIFMAETSLNGPKSLKHLFLIQTGIS 115
Query: 325 GTLPNSIGNLENLANV-----DISSCNFTGPIPTSMANLTRLFHLDFSSN 369
+ NLENL ++ ISS F P + LDF +N
Sbjct: 116 NLEFIPVHNLENLESLYLGSNHISSIKFPKDFPARNLKV-----LDFQNN 160
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 31.2 bits (69), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 46/105 (43%), Gaps = 1/105 (0%)
Query: 239 SLSAIRLPNNYGLSSPVPEFLANFSHLTALDLGDCQLQGKFPEKILQVPTLETLDLSDNP 298
+++ + L +N P F +S LT+LD+G + PE ++P L+ L+L N
Sbjct: 26 NITVLNLTHNQLRRLPAANF-TRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE 84
Query: 299 SLQGSLPHFPKNSSLRNLILFGTGFSGTLPNSIGNLENLANVDIS 343
Q S F ++L L L N +NL +D+S
Sbjct: 85 LSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLS 129
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 31.2 bits (69), Expect = 3.3, Method: Composition-based stats.
Identities = 43/161 (26%), Positives = 61/161 (37%), Gaps = 4/161 (2%)
Query: 215 NLQVLSLSRCELSGPINQYLANLRSLSAIRLPNNYGLSSPVPEFLANFSHLTALDLGDCQ 274
NL +L L L+ L L + L +N L S P L L L C
Sbjct: 56 NLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCG 115
Query: 275 LQGKFPEKILQVPTLETLDLSDNPSLQGSLPH--FPKNSSLRNLILFGTGFSGTLPNSIG 332
LQ P + L+ L L DN +LQ +LP F +L +L L G S +
Sbjct: 116 LQELGPGLFRGLAALQYLYLQDN-ALQ-ALPDDTFRDLGNLTHLFLHGNRISSVPERAFR 173
Query: 333 NLENLANVDISSCNFTGPIPTSMANLTRLFHLDFSSNHFSG 373
L +L + + P + +L RL L +N+ S
Sbjct: 174 GLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSA 214
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 30.8 bits (68), Expect = 3.5, Method: Composition-based stats.
Identities = 43/161 (26%), Positives = 61/161 (37%), Gaps = 4/161 (2%)
Query: 215 NLQVLSLSRCELSGPINQYLANLRSLSAIRLPNNYGLSSPVPEFLANFSHLTALDLGDCQ 274
NL +L L L+ L L + L +N L S P L L L C
Sbjct: 57 NLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCG 116
Query: 275 LQGKFPEKILQVPTLETLDLSDNPSLQGSLPH--FPKNSSLRNLILFGTGFSGTLPNSIG 332
LQ P + L+ L L DN +LQ +LP F +L +L L G S +
Sbjct: 117 LQELGPGLFRGLAALQYLYLQDN-ALQ-ALPDDTFRDLGNLTHLFLHGNRISSVPERAFR 174
Query: 333 NLENLANVDISSCNFTGPIPTSMANLTRLFHLDFSSNHFSG 373
L +L + + P + +L RL L +N+ S
Sbjct: 175 GLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSA 215
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 30.4 bits (67), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 27/57 (47%)
Query: 830 IDFSSNNFEGPIPEEMGRFKSLYALNLSQNVLTGSIPSSFGNLEQIESLDLSMNNLS 886
+D N + +E F L L L++N+++ P +F NL + +L L N L
Sbjct: 37 LDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLK 93
Score = 30.0 bits (66), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 38/168 (22%), Positives = 66/168 (39%), Gaps = 22/168 (13%)
Query: 592 NFTTIPADIGNFMSGTIFFSAANNSLTGVIPQSVCNATYFSVLDLSN-NSLSGTIPTCL- 649
N T+IP + + + G I + ++ + S VL++S+ L P CL
Sbjct: 163 NLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLY 222
Query: 650 --------ITNSSRT------------LGVLNLRGNSLNGTLSDRVPGICGLQILDLNGN 689
IT+ + T L LNL N ++ + + LQ + L G
Sbjct: 223 GLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGG 282
Query: 690 QLEGMVPKSLANCKMLQVLDLGNNNFSKKFPCWLKNASSLQVLVLRSN 737
QL + P + L+VL++ N + + +L+ L+L SN
Sbjct: 283 QLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSN 330
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 29.6 bits (65), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 20/41 (48%)
Query: 846 GRFKSLYALNLSQNVLTGSIPSSFGNLEQIESLDLSMNNLS 886
GR L L L +N LTG P++F I+ L L N +
Sbjct: 51 GRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIK 91
>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|B Chain B, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|C Chain C, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|D Chain D, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|E Chain E, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|F Chain F, Crystal Structure Of The Biglycan Dimer Core Protein
Length = 332
Score = 29.6 bits (65), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 51/116 (43%), Gaps = 9/116 (7%)
Query: 634 LDLSNNSLSGTIPTCLITNSSRTLGVLNLRGNSLNGTLSDRVPGICGLQILDLNGNQLEG 693
L +S L+G IP L TL L+L N + + + L L L NQ+
Sbjct: 177 LRISEAKLTG-IPKDL----PETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRM 231
Query: 694 MVPKSLANCKMLQVLDLGNNNFSKKFPCWLKNASSLQVLVLRSNNFSG---NISCP 746
+ SL+ L+ L L NN S + P L + LQV+ L +NN + N CP
Sbjct: 232 IENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCP 286
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 29.6 bits (65), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 37/157 (23%), Positives = 68/157 (43%), Gaps = 17/157 (10%)
Query: 447 LPEFSNESSSVMNFLDLSGNRLEGPIPISIFFELRNLLTLDLSSNKFSRLKLASSKPRGT 506
LP + + + L L+ N+L+ +P IF EL+NL TL ++ NK L P G
Sbjct: 52 LPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNKLQAL------PIGV 104
Query: 507 PNXXXXXXXXXXXXXXXXISGEIPNWIWEFSANLVFLNLSHNLLESLQEPYF--IAGVGL 564
+ +P +++ L +L+L +N L+SL + F + +
Sbjct: 105 FDQLVNLAELRLDRNQLK---SLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKE 161
Query: 565 LDLHSNEL----QGSIPYMSPNTSYMDYSNNNFTTIP 597
L L++N+L +G+ ++ + NN +P
Sbjct: 162 LRLYNNQLKRVPEGAFDKLT-ELKTLKLDNNQLKRVP 197
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 29.6 bits (65), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 55/226 (24%), Positives = 89/226 (39%), Gaps = 27/226 (11%)
Query: 660 LNLRGNSLNGTLSDRVPGICGLQILDLNGNQLEGMVPKSLANCKMLQVLDLGNNNFSKKF 719
LNL+ NS+ +D + L+IL L+ N + + + L L+L +N +
Sbjct: 40 LNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTTVP 99
Query: 720 PCWLKNASSLQVLVLRSNNFSGNISCPRNNVSWPLLQIIDLASNKFSGRLSKKWLLTLEK 779
+ S L+ L LR+N S N V P L+ +DL G L + LE
Sbjct: 100 TQAFEYLSKLRELWLRNNPIESIPSYAFNRV--PSLRRLDL------GELKR-----LEY 146
Query: 780 MMNAETKSGSELKHLQYGFMGGYQFYQXXXXXXXKSVEILVRKVSNIFTSIDFSSNNFEG 839
+ A + L++L G ++ LVR ++ S N +
Sbjct: 147 ISEAAFEGLVNLRYLNLGMCN---------LKDIPNLTALVR-----LEELELSGNRLDL 192
Query: 840 PIPEEMGRFKSLYALNLSQNVLTGSIPSSFGNLEQIESLDLSMNNL 885
P SL L L + ++F +L+ +E L+LS NNL
Sbjct: 193 IRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHNNL 238
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,200,993
Number of Sequences: 62578
Number of extensions: 999428
Number of successful extensions: 2659
Number of sequences better than 100.0: 89
Number of HSP's better than 100.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 48
Number of HSP's that attempted gapping in prelim test: 1854
Number of HSP's gapped (non-prelim): 509
length of query: 1007
length of database: 14,973,337
effective HSP length: 108
effective length of query: 899
effective length of database: 8,214,913
effective search space: 7385206787
effective search space used: 7385206787
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)