Query 001842
Match_columns 1007
No_of_seqs 1061 out of 5925
Neff 9.6
Searched_HMMs 46136
Date Fri Mar 29 10:37:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001842.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001842hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 6.2E-71 1.4E-75 702.5 49.8 584 32-937 27-611 (968)
2 PLN00113 leucine-rich repeat r 100.0 2.6E-55 5.7E-60 559.1 42.2 513 312-934 70-585 (968)
3 KOG4194 Membrane glycoprotein 100.0 2E-37 4.3E-42 330.4 8.4 380 338-778 81-464 (873)
4 KOG0472 Leucine-rich repeat pr 100.0 3.7E-40 8.1E-45 336.8 -12.3 489 310-910 44-541 (565)
5 KOG4194 Membrane glycoprotein 100.0 1.5E-36 3.3E-41 323.7 4.6 184 582-769 198-381 (873)
6 KOG0472 Leucine-rich repeat pr 100.0 1.2E-38 2.5E-43 325.9 -12.3 486 215-766 46-541 (565)
7 KOG0618 Serine/threonine phosp 100.0 7.8E-36 1.7E-40 335.6 -5.5 504 268-907 3-510 (1081)
8 KOG0618 Serine/threonine phosp 100.0 3.5E-34 7.6E-39 322.4 -4.7 477 220-738 4-487 (1081)
9 KOG0444 Cytoskeletal regulator 100.0 1.3E-31 2.8E-36 287.3 -3.1 369 104-493 4-374 (1255)
10 KOG0444 Cytoskeletal regulator 100.0 7.3E-31 1.6E-35 281.6 -4.5 362 312-742 8-377 (1255)
11 KOG4237 Extracellular matrix p 99.9 8.6E-27 1.9E-31 239.2 -2.7 399 458-907 69-498 (498)
12 PRK15387 E3 ubiquitin-protein 99.9 5.8E-23 1.3E-27 241.5 16.0 80 827-915 384-463 (788)
13 PRK15387 E3 ubiquitin-protein 99.9 1.2E-22 2.7E-27 238.7 17.4 268 539-897 202-469 (788)
14 KOG4237 Extracellular matrix p 99.9 2.9E-24 6.4E-29 220.7 -4.5 410 382-883 67-498 (498)
15 PLN03210 Resistant to P. syrin 99.9 9.4E-21 2E-25 241.6 26.1 341 472-883 549-903 (1153)
16 PLN03210 Resistant to P. syrin 99.9 2.6E-20 5.6E-25 237.6 26.7 340 398-764 549-904 (1153)
17 PRK15370 E3 ubiquitin-protein 99.8 1.1E-20 2.4E-25 224.2 10.9 139 582-740 242-380 (754)
18 PRK15370 E3 ubiquitin-protein 99.8 2.3E-20 5E-25 221.6 10.6 97 582-692 200-296 (754)
19 cd00116 LRR_RI Leucine-rich re 99.7 2.2E-18 4.7E-23 191.5 0.8 38 849-886 250-291 (319)
20 PLN03150 hypothetical protein; 99.7 8.9E-17 1.9E-21 191.1 11.8 118 826-943 419-538 (623)
21 cd00116 LRR_RI Leucine-rich re 99.7 4.2E-18 9.1E-23 189.2 0.3 242 625-912 19-293 (319)
22 KOG0617 Ras suppressor protein 99.6 1.5E-17 3.3E-22 151.9 -4.3 180 678-913 32-215 (264)
23 KOG0617 Ras suppressor protein 99.6 1.9E-17 4.2E-22 151.3 -4.6 185 626-892 30-218 (264)
24 PLN03150 hypothetical protein; 99.4 1.2E-12 2.6E-17 156.0 13.4 126 29-167 367-501 (623)
25 KOG0532 Leucine-rich repeat (L 99.2 9.5E-13 2.1E-17 142.7 -3.3 173 583-768 77-249 (722)
26 KOG0532 Leucine-rich repeat (L 99.2 1.1E-12 2.3E-17 142.4 -4.4 193 629-907 75-270 (722)
27 COG4886 Leucine-rich repeat (L 99.1 7.9E-11 1.7E-15 134.6 7.7 103 656-764 117-220 (394)
28 KOG1909 Ran GTPase-activating 99.1 1.8E-11 3.9E-16 125.9 0.5 141 154-298 90-252 (382)
29 KOG1909 Ran GTPase-activating 99.1 2.2E-11 4.7E-16 125.3 0.3 246 81-348 30-311 (382)
30 COG4886 Leucine-rich repeat (L 99.0 2.3E-10 4.9E-15 130.9 7.0 200 610-893 98-297 (394)
31 KOG3207 Beta-tubulin folding c 98.9 4.7E-10 1E-14 118.7 2.5 188 183-373 142-340 (505)
32 KOG3207 Beta-tubulin folding c 98.9 3.3E-10 7.2E-15 119.8 1.2 212 182-421 116-340 (505)
33 PF14580 LRR_9: Leucine-rich r 98.9 1.3E-09 2.8E-14 106.0 4.9 126 82-221 20-147 (175)
34 KOG1259 Nischarin, modulator o 98.8 6.6E-10 1.4E-14 111.4 0.9 143 619-770 274-416 (490)
35 PF14580 LRR_9: Leucine-rich r 98.8 3.6E-09 7.7E-14 103.0 5.7 107 656-767 20-127 (175)
36 KOG4658 Apoptotic ATPase [Sign 98.8 2.5E-09 5.5E-14 130.1 5.5 110 103-222 567-676 (889)
37 KOG0531 Protein phosphatase 1, 98.8 6.6E-10 1.4E-14 127.0 -0.7 245 604-914 71-322 (414)
38 PF08263 LRRNT_2: Leucine rich 98.8 4.8E-09 1E-13 76.4 3.9 40 33-78 2-43 (43)
39 PF13855 LRR_8: Leucine rich r 98.8 6.4E-09 1.4E-13 83.1 4.0 60 850-909 2-61 (61)
40 PF13855 LRR_8: Leucine rich r 98.7 9.9E-09 2.1E-13 82.0 4.4 60 656-715 2-61 (61)
41 KOG4658 Apoptotic ATPase [Sign 98.7 7.7E-09 1.7E-13 125.9 5.5 128 81-224 523-652 (889)
42 KOG1259 Nischarin, modulator o 98.7 2.2E-09 4.7E-14 107.7 0.6 108 331-444 280-387 (490)
43 KOG0531 Protein phosphatase 1, 98.6 1E-08 2.2E-13 117.3 -0.3 249 478-770 69-322 (414)
44 KOG2120 SCF ubiquitin ligase, 98.6 4.7E-09 1E-13 105.5 -2.8 181 108-297 186-373 (419)
45 COG5238 RNA1 Ran GTPase-activa 98.4 1E-07 2.2E-12 94.8 1.6 217 81-298 30-283 (388)
46 KOG2120 SCF ubiquitin ligase, 98.4 1.9E-08 4.1E-13 101.3 -3.7 160 188-370 186-349 (419)
47 KOG2982 Uncharacterized conser 98.3 3.1E-07 6.7E-12 92.7 1.4 67 181-248 65-131 (418)
48 KOG4579 Leucine-rich repeat (L 98.2 3E-08 6.4E-13 88.5 -5.5 89 826-917 78-166 (177)
49 KOG1859 Leucine-rich repeat pr 98.2 2.1E-07 4.5E-12 104.5 -2.0 128 631-767 166-293 (1096)
50 KOG4341 F-box protein containi 98.1 2.1E-07 4.5E-12 98.5 -2.7 278 108-394 139-438 (483)
51 KOG1859 Leucine-rich repeat pr 98.0 1.1E-07 2.5E-12 106.6 -7.5 128 605-740 164-292 (1096)
52 KOG4579 Leucine-rich repeat (L 97.9 7.8E-07 1.7E-11 79.6 -3.8 136 630-771 28-164 (177)
53 COG5238 RNA1 Ran GTPase-activa 97.8 3E-05 6.4E-10 77.7 5.3 180 207-398 85-288 (388)
54 PF12799 LRR_4: Leucine Rich r 97.7 1.8E-05 4E-10 57.6 2.1 36 850-886 2-37 (44)
55 KOG2982 Uncharacterized conser 97.7 7.6E-06 1.6E-10 82.9 -0.4 84 334-417 70-156 (418)
56 PRK15386 type III secretion pr 97.6 0.00014 3.1E-09 79.8 8.5 16 480-495 51-66 (426)
57 PF12799 LRR_4: Leucine Rich r 97.6 4.7E-05 1E-09 55.5 3.3 36 680-716 2-37 (44)
58 KOG4341 F-box protein containi 97.5 1.2E-05 2.7E-10 85.5 -1.8 293 73-371 126-438 (483)
59 PRK15386 type III secretion pr 97.5 0.00027 5.9E-09 77.6 8.4 76 675-765 48-124 (426)
60 KOG3665 ZYG-1-like serine/thre 97.5 6.9E-05 1.5E-09 89.5 4.1 63 208-273 167-230 (699)
61 KOG3665 ZYG-1-like serine/thre 97.5 0.00012 2.6E-09 87.6 5.8 117 206-325 139-264 (699)
62 PF13306 LRR_5: Leucine rich r 97.4 0.00051 1.1E-08 64.5 7.9 126 596-729 3-128 (129)
63 KOG1644 U2-associated snRNP A' 97.4 0.00051 1.1E-08 66.4 7.3 84 680-766 43-126 (233)
64 KOG1644 U2-associated snRNP A' 97.0 0.00084 1.8E-08 65.0 5.1 112 382-526 42-153 (233)
65 KOG2739 Leucine-rich acidic nu 96.9 0.00058 1.3E-08 69.1 3.1 108 105-221 41-150 (260)
66 KOG1947 Leucine rich repeat pr 96.8 0.00042 9.1E-09 81.8 0.7 13 430-442 426-438 (482)
67 PF13306 LRR_5: Leucine rich r 96.7 0.0044 9.5E-08 58.1 6.7 107 623-736 6-112 (129)
68 KOG2123 Uncharacterized conser 96.0 0.00062 1.3E-08 68.8 -2.9 80 154-244 39-123 (388)
69 PF00560 LRR_1: Leucine Rich R 96.0 0.0025 5.5E-08 38.5 0.7 19 875-894 2-20 (22)
70 KOG2739 Leucine-rich acidic nu 95.9 0.006 1.3E-07 61.9 3.3 66 701-767 63-130 (260)
71 PF00560 LRR_1: Leucine Rich R 95.9 0.0032 6.9E-08 38.1 0.7 20 851-871 2-21 (22)
72 KOG2123 Uncharacterized conser 95.8 0.00059 1.3E-08 68.9 -4.1 87 681-772 21-107 (388)
73 KOG1947 Leucine rich repeat pr 95.6 0.0026 5.7E-08 75.0 -0.5 240 155-418 187-438 (482)
74 KOG4308 LRR-containing protein 92.8 0.0016 3.5E-08 74.7 -10.4 70 179-248 107-182 (478)
75 KOG4308 LRR-containing protein 90.8 0.0096 2.1E-07 68.4 -7.1 88 213-301 203-304 (478)
76 KOG0473 Leucine-rich repeat pr 90.3 0.011 2.4E-07 58.4 -5.9 84 824-910 41-124 (326)
77 KOG3864 Uncharacterized conser 90.3 0.053 1.2E-06 52.9 -1.3 33 189-224 103-135 (221)
78 PF13504 LRR_7: Leucine rich r 89.8 0.22 4.7E-06 27.9 1.4 16 582-597 2-17 (17)
79 KOG3864 Uncharacterized conser 87.0 0.17 3.6E-06 49.6 -0.3 16 183-198 121-136 (221)
80 PF13516 LRR_6: Leucine Rich r 86.3 0.28 6.2E-06 30.2 0.5 21 703-723 2-22 (24)
81 smart00369 LRR_TYP Leucine-ric 85.8 0.54 1.2E-05 29.6 1.7 14 873-886 2-15 (26)
82 smart00370 LRR Leucine-rich re 85.8 0.54 1.2E-05 29.6 1.7 14 873-886 2-15 (26)
83 smart00370 LRR Leucine-rich re 84.9 0.78 1.7E-05 28.9 2.1 21 513-534 2-22 (26)
84 smart00369 LRR_TYP Leucine-ric 84.9 0.78 1.7E-05 28.9 2.1 21 513-534 2-22 (26)
85 PF13516 LRR_6: Leucine Rich r 82.5 0.21 4.5E-06 30.9 -1.3 15 873-887 2-16 (24)
86 KOG4242 Predicted myosin-I-bin 79.9 9 0.00019 42.8 9.0 44 514-557 414-459 (553)
87 KOG0473 Leucine-rich repeat pr 79.3 0.073 1.6E-06 52.9 -6.3 87 675-766 38-124 (326)
88 smart00365 LRR_SD22 Leucine-ri 71.8 3.1 6.7E-05 26.3 1.7 15 872-886 1-15 (26)
89 TIGR00864 PCC polycystin catio 67.9 3.5 7.6E-05 56.1 2.8 45 734-780 2-46 (2740)
90 smart00364 LRR_BAC Leucine-ric 67.3 3.7 8E-05 25.9 1.4 18 581-598 2-19 (26)
91 PF04478 Mid2: Mid2 like cell 56.8 4.6 0.0001 37.7 0.7 35 964-998 50-84 (154)
92 smart00368 LRR_RI Leucine rich 54.5 8.7 0.00019 24.7 1.5 15 703-717 2-16 (28)
93 PTZ00382 Variant-specific surf 43.4 17 0.00036 31.7 2.0 25 964-988 67-91 (96)
94 KOG4242 Predicted myosin-I-bin 41.9 82 0.0018 35.6 7.3 62 133-198 215-279 (553)
95 KOG3763 mRNA export factor TAP 41.6 8.5 0.00018 44.0 -0.1 60 656-717 219-284 (585)
96 PF01102 Glycophorin_A: Glycop 40.0 8.7 0.00019 34.9 -0.3 26 965-990 66-91 (122)
97 PF08374 Protocadherin: Protoc 30.6 36 0.00079 33.9 2.3 14 977-990 51-64 (221)
98 PF08374 Protocadherin: Protoc 29.0 45 0.00098 33.3 2.6 30 964-993 35-64 (221)
99 PF01034 Syndecan: Syndecan do 28.2 15 0.00033 28.7 -0.5 22 965-986 11-32 (64)
100 smart00367 LRR_CC Leucine-rich 26.4 43 0.00093 20.9 1.4 10 215-224 3-12 (26)
101 PF06697 DUF1191: Protein of u 23.5 2.3E+02 0.0049 30.0 6.7 9 968-976 215-223 (278)
102 PF12606 RELT: Tumour necrosis 22.7 29 0.00062 26.0 0.0 27 973-999 9-35 (50)
103 KOG3763 mRNA export factor TAP 20.6 46 0.001 38.3 1.1 39 479-523 216-254 (585)
104 TIGR00864 PCC polycystin catio 20.1 67 0.0014 44.7 2.5 33 685-717 1-33 (2740)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=6.2e-71 Score=702.45 Aligned_cols=584 Identities=35% Similarity=0.569 Sum_probs=390.5
Q ss_pred CHHHHHHHHHhhhcCCCCCCCcCCCCCCCCCCCCCCCCccccceecCCCCCEEEEeCCCCCccccccCCCccccCCCCCe
Q 001842 32 QSDQQSLLLQMKNSFILSKDSITSTKLSQWSSHHSSDCCDWNGVDCDEAGHVIGLDLSREPIIGGLENATGLFSLQYLRS 111 (1007)
Q Consensus 32 ~~~~~~~ll~~k~~~~~~~~~~~~~~l~~W~~~~~~~~c~w~gv~c~~~~~v~~L~L~~~~l~g~~~~~~~l~~l~~L~~ 111 (1007)
.++|++||++||+++. +|. +.+++| ..+.+||.|.||+|+..++|+.|||+++.+.|.+ ++.+..+++|++
T Consensus 27 ~~~~~~~l~~~~~~~~-~~~----~~~~~w--~~~~~~c~w~gv~c~~~~~v~~L~L~~~~i~~~~--~~~~~~l~~L~~ 97 (968)
T PLN00113 27 HAEELELLLSFKSSIN-DPL----KYLSNW--NSSADVCLWQGITCNNSSRVVSIDLSGKNISGKI--SSAIFRLPYIQT 97 (968)
T ss_pred CHHHHHHHHHHHHhCC-CCc----ccCCCC--CCCCCCCcCcceecCCCCcEEEEEecCCCccccC--ChHHhCCCCCCE
Confidence 4589999999999995 454 568899 5678999999999997789999999999999877 678888888999
Q ss_pred eeCCCCCCCCCCCCcccc-CCCCCCEEeCCCCCCCccCCccccCCCCCCEEeCCCCCCCCCccccccchHHhhccCCCCc
Q 001842 112 LNLGFTLFSGIQIPSRLA-NLTNLTYLNLSQSGFIQDIPIEISSLTRLVTLDLSAEPSGGFSFLEISNLSLFLQNLTELR 190 (1007)
Q Consensus 112 L~Ls~n~~~~~~lp~~l~-~l~~L~~L~Ls~n~~~~~lp~~l~~l~~L~~L~Ls~n~~~~l~~~~~~~~~~~l~~l~~L~ 190 (1007)
|+|++|.+.+. +|..+. .+++|++|+|++|.+.+.+|. +.+++|++|++++|
T Consensus 98 L~Ls~n~~~~~-ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n------------------------ 150 (968)
T PLN00113 98 INLSNNQLSGP-IPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNN------------------------ 150 (968)
T ss_pred EECCCCccCCc-CChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEECcCC------------------------
Confidence 99988888775 776654 888888888888887777663 33445555555443
Q ss_pred eeecCCccccCccchhhHhhCCCCCCcEEEccCcCCCCcchhhhcCCCCCCEEECCCCCCCCCCchhhhcCCCCCCEEec
Q 001842 191 ELHLDNVDLFASGTDWCKALSFLPNLQVLSLSRCELSGPINQYLANLRSLSAIRLPNNYGLSSPVPEFLANFSHLTALDL 270 (1007)
Q Consensus 191 ~L~L~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~l~~l~~L~~L~L 270 (1007)
.+++.+|..++.+++|++|++++| .+.+.+|..++++++|++|++
T Consensus 151 ----------------------------------~~~~~~p~~~~~l~~L~~L~L~~n-~l~~~~p~~~~~l~~L~~L~L 195 (968)
T PLN00113 151 ----------------------------------MLSGEIPNDIGSFSSLKVLDLGGN-VLVGKIPNSLTNLTSLEFLTL 195 (968)
T ss_pred ----------------------------------cccccCChHHhcCCCCCEEECccC-cccccCChhhhhCcCCCeeec
Confidence 344444445555555555555555 455555555555666666666
Q ss_pred cCCcCCcccchhccCCCCCCEEeCCCCCCCCCCCCCCCCCCCCcEEEecCCCCcccccccccCCCCCCEEEccCCcCCCC
Q 001842 271 GDCQLQGKFPEKILQVPTLETLDLSDNPSLQGSLPHFPKNSSLRNLILFGTGFSGTLPNSIGNLENLANVDISSCNFTGP 350 (1007)
Q Consensus 271 s~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~ 350 (1007)
++|.+.+.+|..++++++|++|++++| .+.+.+|..++++++|++|++++|.+.+.
T Consensus 196 ~~n~l~~~~p~~l~~l~~L~~L~L~~n------------------------~l~~~~p~~l~~l~~L~~L~L~~n~l~~~ 251 (968)
T PLN00113 196 ASNQLVGQIPRELGQMKSLKWIYLGYN------------------------NLSGEIPYEIGGLTSLNHLDLVYNNLTGP 251 (968)
T ss_pred cCCCCcCcCChHHcCcCCccEEECcCC------------------------ccCCcCChhHhcCCCCCEEECcCceeccc
Confidence 666655555555555555555554443 23344555555666666666666666655
Q ss_pred CcccccCCCCCcEEEeccCcccCCCCCccCCCCCCEEEcccCCCCCccCCcccccCCCcCEEEccCCcCCCccCccccCC
Q 001842 351 IPTSMANLTRLFHLDFSSNHFSGPIPSLGLSRNLSYLDLSSNDLTGRILFTPWEQLLNIKYVHLNYNSLSGSIPRSLFLL 430 (1007)
Q Consensus 351 ~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l 430 (1007)
+|..++++++|++|++++|.+.+.+| .. +..+++|++|++++|.+.+.+|..+.++
T Consensus 252 ~p~~l~~l~~L~~L~L~~n~l~~~~p-----------------------~~-l~~l~~L~~L~Ls~n~l~~~~p~~~~~l 307 (968)
T PLN00113 252 IPSSLGNLKNLQYLFLYQNKLSGPIP-----------------------PS-IFSLQKLISLDLSDNSLSGEIPELVIQL 307 (968)
T ss_pred cChhHhCCCCCCEEECcCCeeeccCc-----------------------hh-HhhccCcCEEECcCCeeccCCChhHcCC
Confidence 66666666655555555555443332 22 4445555555555555555566666655
Q ss_pred CcccccccCCCcccccCccccccCcCCccEEEccCCCCCCCCChhhhccCCCCcEEECCCCccccccccCCCCCCCCCCC
Q 001842 431 PTLEMLLLSTNQFENQLPEFSNESSSVMNFLDLSGNRLEGPIPISIFFELRNLLTLDLSSNKFSRLKLASSKPRGTPNLN 510 (1007)
Q Consensus 431 ~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~ls~n~l~~~i~~~~f~~l~~L~~L~L~~n~l~~l~~~~~~~~~~p~l~ 510 (1007)
++|+.|++++|.+.+ .+|..+ ..+
T Consensus 308 ~~L~~L~l~~n~~~~-------------------------~~~~~~-~~l------------------------------ 331 (968)
T PLN00113 308 QNLEILHLFSNNFTG-------------------------KIPVAL-TSL------------------------------ 331 (968)
T ss_pred CCCcEEECCCCccCC-------------------------cCChhH-hcC------------------------------
Confidence 656655555555443 222221 222
Q ss_pred CCCCccEEEcCCCccccchhhhHhhccccceEEeccCCcccCCCcccccccCCeEecccccccccCCCCCCCCCeEEecC
Q 001842 511 KQSKLSSLDLSDNQISGEIPNWIWEFSANLVFLNLSHNLLESLQEPYFIAGVGLLDLHSNELQGSIPYMSPNTSYMDYSN 590 (1007)
Q Consensus 511 ~l~~L~~L~Ls~n~l~~~ip~~~~~~~~~L~~L~Ls~N~l~~l~~~~~~~~L~~L~l~~N~l~~~~~~~~~~L~~L~ls~ 590 (1007)
++|+.|++++|.+++.+|..+..
T Consensus 332 --~~L~~L~L~~n~l~~~~p~~l~~------------------------------------------------------- 354 (968)
T PLN00113 332 --PRLQVLQLWSNKFSGEIPKNLGK------------------------------------------------------- 354 (968)
T ss_pred --CCCCEEECcCCCCcCcCChHHhC-------------------------------------------------------
Confidence 33444444444444344332211
Q ss_pred CcCcCCCccccccCCCceEEEcccCcccccCCccccCCCCCCEEEccCCcccccCCcchhhcCcCccceEEccCCcCccc
Q 001842 591 NNFTTIPADIGNFMSGTIFFSAANNSLTGVIPQSVCNATYFSVLDLSNNSLSGTIPTCLITNSSRTLGVLNLRGNSLNGT 670 (1007)
Q Consensus 591 n~l~~i~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~Ls~N~l~~~ 670 (1007)
+++|+.|++++|++++.+|..++.+++|+.|++++|++.+.
T Consensus 355 -------------~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~-------------------------- 395 (968)
T PLN00113 355 -------------HNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGE-------------------------- 395 (968)
T ss_pred -------------CCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEeccc--------------------------
Confidence 11222233333333333333444444455555555555444
Q ss_pred cCCCcCCCCCccEEeccCCcccccccccccCCCCCcEEeCCCCcCCccchhhhhcCCCCcEEECCCccCccccCCCCCCC
Q 001842 671 LSDRVPGICGLQILDLNGNQLEGMVPKSLANCKMLQVLDLGNNNFSKKFPCWLKNASSLQVLVLRSNNFSGNISCPRNNV 750 (1007)
Q Consensus 671 ~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~ 750 (1007)
+|..+..+++|+.|++++|++++.+|..|..++.|+.|++++|++++.+|..+..+++|+.|++++|++.+.+ |..+
T Consensus 396 ~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~--p~~~- 472 (968)
T PLN00113 396 IPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGL--PDSF- 472 (968)
T ss_pred CCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeec--Cccc-
Confidence 4444555555555556666665555656666666666666666666666666666666666666666666554 4332
Q ss_pred CCCCCcEEECCCCcCcccCchHHHHhHHHhhhhccccccccccccccccCcceeeeeEEEEEecceeeeeeccccceEEE
Q 001842 751 SWPLLQIIDLASNKFSGRLSKKWLLTLEKMMNAETKSGSELKHLQYGFMGGYQFYQVTVTVTVKSVEILVRKVSNIFTSI 830 (1007)
Q Consensus 751 ~l~~L~~L~Ls~N~l~g~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 830 (1007)
..++|+.||+++|+++|.+|..+. .+..|+.|
T Consensus 473 ~~~~L~~L~ls~n~l~~~~~~~~~------------------------------------------------~l~~L~~L 504 (968)
T PLN00113 473 GSKRLENLDLSRNQFSGAVPRKLG------------------------------------------------SLSELMQL 504 (968)
T ss_pred ccccceEEECcCCccCCccChhhh------------------------------------------------hhhccCEE
Confidence 346777888888888777774321 24457788
Q ss_pred EcccccccCCCcccccCCCCCCEEeCCCCcccccCCcCccCCCCCCEEeCCCccccccCCccCcCCCCCCeEEccCCccc
Q 001842 831 DFSSNNFEGPIPEEMGRFKSLYALNLSQNVLTGSIPSSFGNLEQIESLDLSMNNLSGKIPAPLANLNFLSVLNLSYNNLV 910 (1007)
Q Consensus 831 dLs~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~l~ls~N~L~ 910 (1007)
||++|+++|.+|+.++++++|++|+|++|.++|.+|..|+++++|+.|||++|+++|.+|..++++++|+++++++|+++
T Consensus 505 ~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~ 584 (968)
T PLN00113 505 KLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLH 584 (968)
T ss_pred ECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCCccCCCcccCCCCCCCCC
Q 001842 911 GKIPTSTQLQSFSPTSYEGNKGLYGPP 937 (1007)
Q Consensus 911 g~iP~~~~~~~~~~~~~~gn~~lcg~~ 937 (1007)
|.||..++|.++.+.+|.||+++||.+
T Consensus 585 ~~~p~~~~~~~~~~~~~~~n~~lc~~~ 611 (968)
T PLN00113 585 GSLPSTGAFLAINASAVAGNIDLCGGD 611 (968)
T ss_pred eeCCCcchhcccChhhhcCCccccCCc
Confidence 999999999999999999999999864
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=2.6e-55 Score=559.10 Aligned_cols=513 Identities=34% Similarity=0.515 Sum_probs=426.1
Q ss_pred CCcEEEecCCCCcccccccccCCCCCCEEEccCCcCCCCCccccc-CCCCCcEEEeccCcccCCCCCccCCCCCCEEEcc
Q 001842 312 SLRNLILFGTGFSGTLPNSIGNLENLANVDISSCNFTGPIPTSMA-NLTRLFHLDFSSNHFSGPIPSLGLSRNLSYLDLS 390 (1007)
Q Consensus 312 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~-~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~ 390 (1007)
+++.|++++|.+.+.++..+..+++|+.|++++|++.+.+|..+. .+++|++|++++|.+++.+|. ...++|++|+++
T Consensus 70 ~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~-~~l~~L~~L~Ls 148 (968)
T PLN00113 70 RVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR-GSIPNLETLDLS 148 (968)
T ss_pred cEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc-cccCCCCEEECc
Confidence 566777777778888888888889999999999988888887654 888899999998888877765 234788889998
Q ss_pred cCCCCCccCCcccccCCCcCEEEccCCcCCCccCccccCCCcccccccCCCcccccCccccccCcCCccEEEccCCCCCC
Q 001842 391 SNDLTGRILFTPWEQLLNIKYVHLNYNSLSGSIPRSLFLLPTLEMLLLSTNQFENQLPEFSNESSSVMNFLDLSGNRLEG 470 (1007)
Q Consensus 391 ~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~ls~n~l~~ 470 (1007)
+|.+++.+|.. ++.+++|++|++++|.+.+.+|..+.++++|++|++++|.+.+.+|.. ...+++|++|++++|.+.+
T Consensus 149 ~n~~~~~~p~~-~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~n~l~~ 226 (968)
T PLN00113 149 NNMLSGEIPND-IGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRE-LGQMKSLKWIYLGYNNLSG 226 (968)
T ss_pred CCcccccCChH-HhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChH-HcCcCCccEEECcCCccCC
Confidence 88888777766 888888999999988888888888888888888888888887766653 3456777777777777777
Q ss_pred CCChhhhccCCCCcEEECCCCccccccccCCCCCCCCC-CCCCCCccEEEcCCCccccchhhhHhhccccceEEeccCCc
Q 001842 471 PIPISIFFELRNLLTLDLSSNKFSRLKLASSKPRGTPN-LNKQSKLSSLDLSDNQISGEIPNWIWEFSANLVFLNLSHNL 549 (1007)
Q Consensus 471 ~i~~~~f~~l~~L~~L~L~~n~l~~l~~~~~~~~~~p~-l~~l~~L~~L~Ls~n~l~~~ip~~~~~~~~~L~~L~Ls~N~ 549 (1007)
.+|..+ ..+++|++|++++|.++ +.+|. +..+++|++|++++|++.+.+|..+... .+
T Consensus 227 ~~p~~l-~~l~~L~~L~L~~n~l~---------~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l-~~---------- 285 (968)
T PLN00113 227 EIPYEI-GGLTSLNHLDLVYNNLT---------GPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSL-QK---------- 285 (968)
T ss_pred cCChhH-hcCCCCCEEECcCceec---------cccChhHhCCCCCCEEECcCCeeeccCchhHhhc-cC----------
Confidence 777665 77777777777777765 33444 6677777777777777776676655432 22
Q ss_pred ccCCCcccccccCCeEecccccccccCCCCCCCCCeEEecCCcCcCCCccccccCCCceEEEcccCcccccCCccccCCC
Q 001842 550 LESLQEPYFIAGVGLLDLHSNELQGSIPYMSPNTSYMDYSNNNFTTIPADIGNFMSGTIFFSAANNSLTGVIPQSVCNAT 629 (1007)
Q Consensus 550 l~~l~~~~~~~~L~~L~l~~N~l~~~~~~~~~~L~~L~ls~n~l~~i~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~ 629 (1007)
|+.|++++|.+.+.+| ..+..+++|+.|++++|.+++.+|..++.++
T Consensus 286 ------------L~~L~Ls~n~l~~~~p---------------------~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~ 332 (968)
T PLN00113 286 ------------LISLDLSDNSLSGEIP---------------------ELVIQLQNLEILHLFSNNFTGKIPVALTSLP 332 (968)
T ss_pred ------------cCEEECcCCeeccCCC---------------------hhHcCCCCCcEEECCCCccCCcCChhHhcCC
Confidence 3333333333333333 2233467888999999999999999999999
Q ss_pred CCCEEEccCCcccccCCcchhhcCcCccceEEccCCcCccccCCCcCCCCCccEEeccCCcccccccccccCCCCCcEEe
Q 001842 630 YFSVLDLSNNSLSGTIPTCLITNSSRTLGVLNLRGNSLNGTLSDRVPGICGLQILDLNGNQLEGMVPKSLANCKMLQVLD 709 (1007)
Q Consensus 630 ~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ 709 (1007)
+|+.|++++|.+++.+|..+.... +|+.|++++|++++.+|..+..+++|+.|++++|++.+.+|..+..+++|+.|+
T Consensus 333 ~L~~L~L~~n~l~~~~p~~l~~~~--~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~ 410 (968)
T PLN00113 333 RLQVLQLWSNKFSGEIPKNLGKHN--NLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVR 410 (968)
T ss_pred CCCEEECcCCCCcCcCChHHhCCC--CCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEE
Confidence 999999999999999999888766 999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcCCccchhhhhcCCCCcEEECCCccCccccCCCCCCCCCCCCcEEECCCCcCcccCchHHHHhHHHhhhhcccccc
Q 001842 710 LGNNNFSKKFPCWLKNASSLQVLVLRSNNFSGNISCPRNNVSWPLLQIIDLASNKFSGRLSKKWLLTLEKMMNAETKSGS 789 (1007)
Q Consensus 710 Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~~l~~~~~~~~~~~~ 789 (1007)
+++|++++..|..+..+++|+.|++++|++++.+ |..+..+++|+.|++++|++.|.+|..+
T Consensus 411 L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~--~~~~~~l~~L~~L~L~~n~~~~~~p~~~---------------- 472 (968)
T PLN00113 411 LQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRI--NSRKWDMPSLQMLSLARNKFFGGLPDSF---------------- 472 (968)
T ss_pred CcCCEeeeECChhHhcCCCCCEEECcCCcccCcc--ChhhccCCCCcEEECcCceeeeecCccc----------------
Confidence 9999999999999999999999999999999988 8888899999999999999998888421
Q ss_pred ccccccccccCcceeeeeEEEEEecceeeeeeccccceEEEEcccccccCCCcccccCCCCCCEEeCCCCcccccCCcCc
Q 001842 790 ELKHLQYGFMGGYQFYQVTVTVTVKSVEILVRKVSNIFTSIDFSSNNFEGPIPEEMGRFKSLYALNLSQNVLTGSIPSSF 869 (1007)
Q Consensus 790 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ldLs~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~ 869 (1007)
....|+.||+++|+++|.+|..+.++++|+.|+|++|+++|.+|..+
T Consensus 473 ---------------------------------~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~ 519 (968)
T PLN00113 473 ---------------------------------GSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDEL 519 (968)
T ss_pred ---------------------------------ccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHH
Confidence 13468899999999999999999999999999999999999999999
Q ss_pred cCCCCCCEEeCCCccccccCCccCcCCCCCCeEEccCCcccccCCCCC-CCCccCCCcccCCCCCC
Q 001842 870 GNLEQIESLDLSMNNLSGKIPAPLANLNFLSVLNLSYNNLVGKIPTST-QLQSFSPTSYEGNKGLY 934 (1007)
Q Consensus 870 ~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~l~ls~N~L~g~iP~~~-~~~~~~~~~~~gn~~lc 934 (1007)
+++++|++|||++|+++|.+|..++++++|+.||+++|+++|.+|... .+..+......+|+..+
T Consensus 520 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~ 585 (968)
T PLN00113 520 SSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHG 585 (968)
T ss_pred cCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCccee
Confidence 999999999999999999999999999999999999999999999753 23334444556676443
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=2e-37 Score=330.39 Aligned_cols=380 Identities=22% Similarity=0.239 Sum_probs=259.0
Q ss_pred CEEEccCCcCCCCCcccccCCCCCcEEEeccCcccCCCCCccCC-CCCCEEEcccCCCCCccCCcccccCCCcCEEEccC
Q 001842 338 ANVDISSCNFTGPIPTSMANLTRLFHLDFSSNHFSGPIPSLGLS-RNLSYLDLSSNDLTGRILFTPWEQLLNIKYVHLNY 416 (1007)
Q Consensus 338 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~ 416 (1007)
+.||+++|.+....+..|.++++|+.+++.+|.++ .+|.+... .+|+.|+|.+|.|+ .+....+..++.|+.|||+.
T Consensus 81 ~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~-sv~se~L~~l~alrslDLSr 158 (873)
T KOG4194|consen 81 QTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLIS-SVTSEELSALPALRSLDLSR 158 (873)
T ss_pred eeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeeeccccc-cccHHHHHhHhhhhhhhhhh
Confidence 34555555555555555555666666666655555 44444444 44666666666665 44444466666666666666
Q ss_pred CcCCCccCccccCCCcccccccCCCcccccCccccccCcCCccEEEccCCCCCCCCChhhhccCCCCcEEECCCCccccc
Q 001842 417 NSLSGSIPRSLFLLPTLEMLLLSTNQFENQLPEFSNESSSVMNFLDLSGNRLEGPIPISIFFELRNLLTLDLSSNKFSRL 496 (1007)
Q Consensus 417 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~ls~n~l~~~i~~~~f~~l~~L~~L~L~~n~l~~l 496 (1007)
|.++......|..-.++++|+|++|+|+. +....+..+.+|..|.++.|+++ .+|...|.++++|+.|+|..|+|..+
T Consensus 159 N~is~i~~~sfp~~~ni~~L~La~N~It~-l~~~~F~~lnsL~tlkLsrNrit-tLp~r~Fk~L~~L~~LdLnrN~iriv 236 (873)
T KOG4194|consen 159 NLISEIPKPSFPAKVNIKKLNLASNRITT-LETGHFDSLNSLLTLKLSRNRIT-TLPQRSFKRLPKLESLDLNRNRIRIV 236 (873)
T ss_pred chhhcccCCCCCCCCCceEEeeccccccc-cccccccccchheeeecccCccc-ccCHHHhhhcchhhhhhccccceeee
Confidence 66664444445555566666666666652 33333444556666666666666 67777777777777777777777643
Q ss_pred cccCCCCCCCCCCCCCCCccEEEcCCCccccchhhhHhhccccceEEeccCCcccCCCcccccccCCeEecccccccccC
Q 001842 497 KLASSKPRGTPNLNKQSKLSSLDLSDNQISGEIPNWIWEFSANLVFLNLSHNLLESLQEPYFIAGVGLLDLHSNELQGSI 576 (1007)
Q Consensus 497 ~~~~~~~~~~p~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~~~~L~~L~Ls~N~l~~l~~~~~~~~L~~L~l~~N~l~~~~ 576 (1007)
+.. .|.++++|+.|.+..|++. .+.++.|-.+.++++|+|+.|+++.+..
T Consensus 237 e~l--------tFqgL~Sl~nlklqrN~I~-kL~DG~Fy~l~kme~l~L~~N~l~~vn~--------------------- 286 (873)
T KOG4194|consen 237 EGL--------TFQGLPSLQNLKLQRNDIS-KLDDGAFYGLEKMEHLNLETNRLQAVNE--------------------- 286 (873)
T ss_pred hhh--------hhcCchhhhhhhhhhcCcc-cccCcceeeecccceeecccchhhhhhc---------------------
Confidence 321 2666777777777777776 6666666555556666666555554433
Q ss_pred CCCCCCCCeEEecCCcCcCCCccccccCCCceEEEcccCcccccCCccccCCCCCCEEEccCCcccccCCcchhhcCcCc
Q 001842 577 PYMSPNTSYMDYSNNNFTTIPADIGNFMSGTIFFSAANNSLTGVIPQSVCNATYFSVLDLSNNSLSGTIPTCLITNSSRT 656 (1007)
Q Consensus 577 ~~~~~~L~~L~ls~n~l~~i~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~~~~~ 656 (1007)
+..-++++|+.|+++.|.|..+.++...-+++|+.|||++|+++..-+..+.... .
T Consensus 287 ----------------------g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~--~ 342 (873)
T KOG4194|consen 287 ----------------------GWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLS--Q 342 (873)
T ss_pred ----------------------ccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHH--H
Confidence 2222456666677777777666666777777888888888888744445555444 7
Q ss_pred cceEEccCCcCccccCCCcCCCCCccEEeccCCcccccccc---cccCCCCCcEEeCCCCcCCccchhhhhcCCCCcEEE
Q 001842 657 LGVLNLRGNSLNGTLSDRVPGICGLQILDLNGNQLEGMVPK---SLANCKMLQVLDLGNNNFSKKFPCWLKNASSLQVLV 733 (1007)
Q Consensus 657 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~---~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 733 (1007)
|++|+|++|+++.+-..+|.++++|++|||++|.|++.+.+ .|.++++|+.|++.+|++..+.-.+|.++++|++|+
T Consensus 343 Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~Ld 422 (873)
T KOG4194|consen 343 LEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLD 422 (873)
T ss_pred hhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceec
Confidence 88888888888877777888888888888888888877654 477888888888888888877777888888888888
Q ss_pred CCCccCccccCCCCCCCCCCCCcEEECCCCcCcccCchHHHHhHH
Q 001842 734 LRSNNFSGNISCPRNNVSWPLLQIIDLASNKFSGRLSKKWLLTLE 778 (1007)
Q Consensus 734 L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~~l~ 778 (1007)
|.+|.|...- |.+|..+ .|+.|-+..-.|-|+|...|+..|-
T Consensus 423 L~~NaiaSIq--~nAFe~m-~Lk~Lv~nSssflCDCql~Wl~qWl 464 (873)
T KOG4194|consen 423 LGDNAIASIQ--PNAFEPM-ELKELVMNSSSFLCDCQLKWLAQWL 464 (873)
T ss_pred CCCCcceeec--ccccccc-hhhhhhhcccceEEeccHHHHHHHH
Confidence 8888887665 7788888 8999999999999999999998885
No 4
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=3.7e-40 Score=336.79 Aligned_cols=489 Identities=25% Similarity=0.309 Sum_probs=325.8
Q ss_pred CCCCcEEEecCCCCcccccccccCCCCCCEEEccCCcCCCCCcccccCCCCCcEEEeccCcccCCCCCccCCCCCCEEEc
Q 001842 310 NSSLRNLILFGTGFSGTLPNSIGNLENLANVDISSCNFTGPIPTSMANLTRLFHLDFSSNHFSGPIPSLGLSRNLSYLDL 389 (1007)
Q Consensus 310 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L 389 (1007)
-..|+.+.++.|.+.. +.+.+.++..|.++++.+|++. ..|++++.+..++.++.++|++....+......++..+++
T Consensus 44 qv~l~~lils~N~l~~-l~~dl~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~ 121 (565)
T KOG0472|consen 44 QVDLQKLILSHNDLEV-LREDLKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLSELPEQIGSLISLVKLDC 121 (565)
T ss_pred hcchhhhhhccCchhh-ccHhhhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhc
Confidence 3456666666666653 3445777888888888888887 6777788888888888888888755555555578888888
Q ss_pred ccCCCCCccCCcccccCCCcCEEEccCCcCCCccCccccCCCcccccccCCCcccccCccccccCcCCccEEEccCCCCC
Q 001842 390 SSNDLTGRILFTPWEQLLNIKYVHLNYNSLSGSIPRSLFLLPTLEMLLLSTNQFENQLPEFSNESSSVMNFLDLSGNRLE 469 (1007)
Q Consensus 390 ~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~ls~n~l~ 469 (1007)
++|.+. +++.. ++.+..++.++..+|+++ ..|.+++.+.++..+++.+|++....|... . .+.|+++|...|.+.
T Consensus 122 s~n~~~-el~~~-i~~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~l~~~~i-~-m~~L~~ld~~~N~L~ 196 (565)
T KOG0472|consen 122 SSNELK-ELPDS-IGRLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLKALPENHI-A-MKRLKHLDCNSNLLE 196 (565)
T ss_pred ccccee-ecCch-HHHHhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchhhCCHHHH-H-HHHHHhcccchhhhh
Confidence 888887 66666 788888888888888887 678888888999999999999885444432 2 788999999888887
Q ss_pred CCCChhhhccCCCCcEEECCCCccccccccCCCCCCCCCCCCCCCccEEEcCCCccccchhhhHhhccccceEEeccCCc
Q 001842 470 GPIPISIFFELRNLLTLDLSSNKFSRLKLASSKPRGTPNLNKQSKLSSLDLSDNQISGEIPNWIWEFSANLVFLNLSHNL 549 (1007)
Q Consensus 470 ~~i~~~~f~~l~~L~~L~L~~n~l~~l~~~~~~~~~~p~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~~~~L~~L~Ls~N~ 549 (1007)
.+|..+ +.+.+|+.|++..|++. .+|.|..|..|+++.++.|+|+ .+|.+..+..+++..||+.+|+
T Consensus 197 -tlP~~l-g~l~~L~~LyL~~Nki~----------~lPef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNk 263 (565)
T KOG0472|consen 197 -TLPPEL-GGLESLELLYLRRNKIR----------FLPEFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNK 263 (565)
T ss_pred -cCChhh-cchhhhHHHHhhhcccc----------cCCCCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccc
Confidence 899998 99999999999999997 4667899999999999999998 9999999999999999999999
Q ss_pred ccCCCccc-ccccCCeEecccccccccCCCCC-CCCCeEEecCCcCcCCCccccccCCC--ceEEEc--ccCcccccCCc
Q 001842 550 LESLQEPY-FIAGVGLLDLHSNELQGSIPYMS-PNTSYMDYSNNNFTTIPADIGNFMSG--TIFFSA--ANNSLTGVIPQ 623 (1007)
Q Consensus 550 l~~l~~~~-~~~~L~~L~l~~N~l~~~~~~~~-~~L~~L~ls~n~l~~i~~~~~~~~~~--L~~L~l--~~n~l~~~~p~ 623 (1007)
++++|... .++++++||+++|.+++..+... -+++.|-+.+|.+.+|-.++.+.-+. |++|.= ..-.++..-.
T Consensus 264 lke~Pde~clLrsL~rLDlSNN~is~Lp~sLgnlhL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~- 342 (565)
T KOG0472|consen 264 LKEVPDEICLLRSLERLDLSNNDISSLPYSLGNLHLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEG- 342 (565)
T ss_pred cccCchHHHHhhhhhhhcccCCccccCCcccccceeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcc-
Confidence 99999876 56778888888888877555431 15666777777776655544321110 111110 0000000000
Q ss_pred cccCCCCCCEEEccCCcccccCCcchhhcCcCccceEEccCCcCccccCCCcCCCC--CccEEeccCCcccccccccccC
Q 001842 624 SVCNATYFSVLDLSNNSLSGTIPTCLITNSSRTLGVLNLRGNSLNGTLSDRVPGIC--GLQILDLNGNQLEGMVPKSLAN 701 (1007)
Q Consensus 624 ~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~--~L~~L~L~~N~l~~~~p~~l~~ 701 (1007)
.+-..-+ ...+..|... .. .+.+.|++++-+++....+.|..-. -....+++.|++. .+|..+..
T Consensus 343 -----~~e~~~t----~~~~~~~~~~-~~--i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~ 409 (565)
T KOG0472|consen 343 -----GTETAMT----LPSESFPDIY-AI--ITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVE 409 (565)
T ss_pred -----cccccCC----CCCCcccchh-hh--hhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHh-hhhhhhHH
Confidence 0000000 0000111110 01 1445555555555533333332211 2456666666666 55555555
Q ss_pred CCCCcE-EeCCCCcCCccchhhhhcCCCCcEEECCCccCccccCCCCCCCCCCCCcEEECCCCcCcccCchHHHHhHHHh
Q 001842 702 CKMLQV-LDLGNNNFSKKFPCWLKNASSLQVLVLRSNNFSGNISCPRNNVSWPLLQIIDLASNKFSGRLSKKWLLTLEKM 780 (1007)
Q Consensus 702 l~~L~~-L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~~l~~~ 780 (1007)
+..+.+ +++++|.+ +.+|..+..+++|..|+|++|.+... |..++.+..|++||+|.|+|.
T Consensus 410 lkelvT~l~lsnn~i-sfv~~~l~~l~kLt~L~L~NN~Ln~L---P~e~~~lv~Lq~LnlS~NrFr-------------- 471 (565)
T KOG0472|consen 410 LKELVTDLVLSNNKI-SFVPLELSQLQKLTFLDLSNNLLNDL---PEEMGSLVRLQTLNLSFNRFR-------------- 471 (565)
T ss_pred HHHHHHHHHhhcCcc-ccchHHHHhhhcceeeecccchhhhc---chhhhhhhhhheecccccccc--------------
Confidence 554443 34444444 56676777777777777777766543 555555555555555555543
Q ss_pred hhhccccccccccccccccCcceeeeeEEEEEecceeeeeeccccceEEEEcccccccCCCcccccCCCCCCEEeCCCCc
Q 001842 781 MNAETKSGSELKHLQYGFMGGYQFYQVTVTVTVKSVEILVRKVSNIFTSIDFSSNNFEGPIPEEMGRFKSLYALNLSQNV 860 (1007)
Q Consensus 781 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ldLs~N~l~g~ip~~~~~l~~L~~L~Ls~N~ 860 (1007)
.+|+.+..+..++.+-.++|+
T Consensus 472 -----------------------------------------------------------~lP~~~y~lq~lEtllas~nq 492 (565)
T KOG0472|consen 472 -----------------------------------------------------------MLPECLYELQTLETLLASNNQ 492 (565)
T ss_pred -----------------------------------------------------------cchHHHhhHHHHHHHHhcccc
Confidence 455555555566666666677
Q ss_pred ccccCCcCccCCCCCCEEeCCCccccccCCccCcCCCCCCeEEccCCccc
Q 001842 861 LTGSIPSSFGNLEQIESLDLSMNNLSGKIPAPLANLNFLSVLNLSYNNLV 910 (1007)
Q Consensus 861 l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~l~ls~N~L~ 910 (1007)
+....|+.+++|.+|..|||.+|.+. .||+.++++++|+.|++++|++.
T Consensus 493 i~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 493 IGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred ccccChHHhhhhhhcceeccCCCchh-hCChhhccccceeEEEecCCccC
Confidence 76555555777777777777777777 67777777777777777777776
No 5
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=1.5e-36 Score=323.71 Aligned_cols=184 Identities=22% Similarity=0.184 Sum_probs=142.4
Q ss_pred CCCeEEecCCcCcCCCccccccCCCceEEEcccCcccccCCccccCCCCCCEEEccCCcccccCCcchhhcCcCccceEE
Q 001842 582 NTSYMDYSNNNFTTIPADIGNFMSGTIFFSAANNSLTGVIPQSVCNATYFSVLDLSNNSLSGTIPTCLITNSSRTLGVLN 661 (1007)
Q Consensus 582 ~L~~L~ls~n~l~~i~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~ 661 (1007)
+|..|.+++|+++.+|...|+.+++|+.|+|..|+|.-.--..|.++++|+.|.+..|.++..-...|..+. ++++|+
T Consensus 198 sL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~--kme~l~ 275 (873)
T KOG4194|consen 198 SLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLE--KMEHLN 275 (873)
T ss_pred hheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeec--ccceee
Confidence 566777778888888888888888888888888888765556777888888888888888744444555554 788888
Q ss_pred ccCCcCccccCCCcCCCCCccEEeccCCcccccccccccCCCCCcEEeCCCCcCCccchhhhhcCCCCcEEECCCccCcc
Q 001842 662 LRGNSLNGTLSDRVPGICGLQILDLNGNQLEGMVPKSLANCKMLQVLDLGNNNFSKKFPCWLKNASSLQVLVLRSNNFSG 741 (1007)
Q Consensus 662 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~ 741 (1007)
|+.|+++..-..++-++++|+.|+|++|.|..+-++++..+++|+.|||++|+|+...+..|..+..|++|+|++|+++.
T Consensus 276 L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~ 355 (873)
T KOG4194|consen 276 LETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDH 355 (873)
T ss_pred cccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHH
Confidence 88888887777888888888888888888888888888888888888888888888888888888888888888888875
Q ss_pred ccCCCCCCCCCCCCcEEECCCCcCcccC
Q 001842 742 NISCPRNNVSWPLLQIIDLASNKFSGRL 769 (1007)
Q Consensus 742 ~~~~~~~~~~l~~L~~L~Ls~N~l~g~~ 769 (1007)
.- ...+..+++|+.|||++|.+++.|
T Consensus 356 l~--e~af~~lssL~~LdLr~N~ls~~I 381 (873)
T KOG4194|consen 356 LA--EGAFVGLSSLHKLDLRSNELSWCI 381 (873)
T ss_pred HH--hhHHHHhhhhhhhcCcCCeEEEEE
Confidence 44 445666667777777777766444
No 6
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=1.2e-38 Score=325.90 Aligned_cols=486 Identities=28% Similarity=0.359 Sum_probs=362.1
Q ss_pred CCcEEEccCcCCCCcchhhhcCCCCCCEEECCCCCCCCCCchhhhcCCCCCCEEeccCCcCCcccchhccCCCCCCEEeC
Q 001842 215 NLQVLSLSRCELSGPINQYLANLRSLSAIRLPNNYGLSSPVPEFLANFSHLTALDLGDCQLQGKFPEKILQVPTLETLDL 294 (1007)
Q Consensus 215 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L 294 (1007)
.|+.+.+++|.+.. +.+.+.++..|.+|++++| ... ..|.+++.+..++.++.++|++. .+|+.++.+.+|+.++.
T Consensus 46 ~l~~lils~N~l~~-l~~dl~nL~~l~vl~~~~n-~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~ 121 (565)
T KOG0472|consen 46 DLQKLILSHNDLEV-LREDLKNLACLTVLNVHDN-KLS-QLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDC 121 (565)
T ss_pred chhhhhhccCchhh-ccHhhhcccceeEEEeccc-hhh-hCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhc
Confidence 46667777776653 3345677777888888877 443 46777888888888888888887 77888888888888887
Q ss_pred CCCCCCCCCCCCCCCCCCCcEEEecCCCCcccccccccCCCCCCEEEccCCcCCCCCcccccCCCCCcEEEeccCcccCC
Q 001842 295 SDNPSLQGSLPHFPKNSSLRNLILFGTGFSGTLPNSIGNLENLANVDISSCNFTGPIPTSMANLTRLFHLDFSSNHFSGP 374 (1007)
Q Consensus 295 s~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~ 374 (1007)
++|.. . .+|++++.+..|+.++..+|+++ ..|+++..+.+|..+++.+|++...
T Consensus 122 s~n~~------------------------~-el~~~i~~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~l 175 (565)
T KOG0472|consen 122 SSNEL------------------------K-ELPDSIGRLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLKAL 175 (565)
T ss_pred cccce------------------------e-ecCchHHHHhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchhhC
Confidence 77742 2 45677788888888888888887 5777888888888888888888877
Q ss_pred CCCccCCCCCCEEEcccCCCCCccCCcccccCCCcCEEEccCCcCCCccCccccCCCcccccccCCCcccccCccccccC
Q 001842 375 IPSLGLSRNLSYLDLSSNDLTGRILFTPWEQLLNIKYVHLNYNSLSGSIPRSLFLLPTLEMLLLSTNQFENQLPEFSNES 454 (1007)
Q Consensus 375 ~~~~~~~~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~ 454 (1007)
.|.....+.|++||...|.++ .+|.. ++.+.+|+.|++..|.+. ..| .|..|..|++++++.|++. .+|......
T Consensus 176 ~~~~i~m~~L~~ld~~~N~L~-tlP~~-lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~ 250 (565)
T KOG0472|consen 176 PENHIAMKRLKHLDCNSNLLE-TLPPE-LGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIE-MLPAEHLKH 250 (565)
T ss_pred CHHHHHHHHHHhcccchhhhh-cCChh-hcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHH-hhHHHHhcc
Confidence 777666788888888888776 77777 888888888888888887 566 7888888888888888887 566666667
Q ss_pred cCCccEEEccCCCCCCCCChhhhccCCCCcEEECCCCccccccccCCCCCCCCC-CCCCCCccEEEcCCCccccchhhhH
Q 001842 455 SSVMNFLDLSGNRLEGPIPISIFFELRNLLTLDLSSNKFSRLKLASSKPRGTPN-LNKQSKLSSLDLSDNQISGEIPNWI 533 (1007)
Q Consensus 455 ~~~L~~L~ls~n~l~~~i~~~~f~~l~~L~~L~L~~n~l~~l~~~~~~~~~~p~-l~~l~~L~~L~Ls~n~l~~~ip~~~ 533 (1007)
++++..||+.+|+++ ++|.++ +-+.+|++||+++|.|+.+ |. ++++ .|+.|-+.+|.+. +|-.++
T Consensus 251 L~~l~vLDLRdNklk-e~Pde~-clLrsL~rLDlSNN~is~L----------p~sLgnl-hL~~L~leGNPlr-TiRr~i 316 (565)
T KOG0472|consen 251 LNSLLVLDLRDNKLK-EVPDEI-CLLRSLERLDLSNNDISSL----------PYSLGNL-HLKFLALEGNPLR-TIRREI 316 (565)
T ss_pred cccceeeeccccccc-cCchHH-HHhhhhhhhcccCCccccC----------Ccccccc-eeeehhhcCCchH-HHHHHH
Confidence 778888888888887 788887 7788888888888888743 33 7777 7888888888876 555444
Q ss_pred hhccc--cceEEec--cCCcccCCCcccccccCCeEecccccccccCCC--CCCCCCeEEecCCcCcCCCccccccCC--
Q 001842 534 WEFSA--NLVFLNL--SHNLLESLQEPYFIAGVGLLDLHSNELQGSIPY--MSPNTSYMDYSNNNFTTIPADIGNFMS-- 605 (1007)
Q Consensus 534 ~~~~~--~L~~L~L--s~N~l~~l~~~~~~~~L~~L~l~~N~l~~~~~~--~~~~L~~L~ls~n~l~~i~~~~~~~~~-- 605 (1007)
....+ -|++|.= ..-.+..-.... -..-+ ...+..|. ...+.+.|++++-+++.+|+.+|....
T Consensus 317 i~~gT~~vLKyLrs~~~~dglS~se~~~----e~~~t----~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~ 388 (565)
T KOG0472|consen 317 ISKGTQEVLKYLRSKIKDDGLSQSEGGT----ETAMT----LPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSE 388 (565)
T ss_pred HcccHHHHHHHHHHhhccCCCCCCcccc----cccCC----CCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhc
Confidence 33221 0111110 000000000000 00000 00000110 123678899999999999999887433
Q ss_pred CceEEEcccCcccccCCccccCCCCCCE-EEccCCcccccCCcchhhcCcCccceEEccCCcCccccCCCcCCCCCccEE
Q 001842 606 GTIFFSAANNSLTGVIPQSVCNATYFSV-LDLSNNSLSGTIPTCLITNSSRTLGVLNLRGNSLNGTLSDRVPGICGLQIL 684 (1007)
Q Consensus 606 ~L~~L~l~~n~l~~~~p~~~~~~~~L~~-L~Ls~N~l~~~~p~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 684 (1007)
-....+++.|++. .+|..+..++.+.+ +++++|.++ .+|..+...+ +|..|+|++|-+. .+|..++.+..|+.|
T Consensus 389 ~Vt~VnfskNqL~-elPk~L~~lkelvT~l~lsnn~is-fv~~~l~~l~--kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~L 463 (565)
T KOG0472|consen 389 IVTSVNFSKNQLC-ELPKRLVELKELVTDLVLSNNKIS-FVPLELSQLQ--KLTFLDLSNNLLN-DLPEEMGSLVRLQTL 463 (565)
T ss_pred ceEEEecccchHh-hhhhhhHHHHHHHHHHHhhcCccc-cchHHHHhhh--cceeeecccchhh-hcchhhhhhhhhhee
Confidence 2678899999997 56777666666544 555666655 8888887766 9999999999887 578888999999999
Q ss_pred eccCCcccccccccccCCCCCcEEeCCCCcCCccchhhhhcCCCCcEEECCCccCccccCCCCCCCCCCCCcEEECCCCc
Q 001842 685 DLNGNQLEGMVPKSLANCKMLQVLDLGNNNFSKKFPCWLKNASSLQVLVLRSNNFSGNISCPRNNVSWPLLQIIDLASNK 764 (1007)
Q Consensus 685 ~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~ 764 (1007)
+++.|++. .+|..+.....++.+-.++|++....|..+.++.+|.+|||.+|.+... |+.++++++|+.|++++|+
T Consensus 464 nlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq~I---Pp~LgnmtnL~hLeL~gNp 539 (565)
T KOG0472|consen 464 NLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQQI---PPILGNMTNLRHLELDGNP 539 (565)
T ss_pred cccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchhhC---ChhhccccceeEEEecCCc
Confidence 99999999 7899998888999999999999888888899999999999999999854 8899999999999999999
Q ss_pred Cc
Q 001842 765 FS 766 (1007)
Q Consensus 765 l~ 766 (1007)
|.
T Consensus 540 fr 541 (565)
T KOG0472|consen 540 FR 541 (565)
T ss_pred cC
Confidence 98
No 7
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=100.00 E-value=7.8e-36 Score=335.64 Aligned_cols=504 Identities=28% Similarity=0.362 Sum_probs=282.8
Q ss_pred EeccCCcCCcccchhccCCCCCCEEeCCCCCCCCCCCCCCCCCCCCcEEEecCCCCcccccccccCCCCCCEEEccCCcC
Q 001842 268 LDLGDCQLQGKFPEKILQVPTLETLDLSDNPSLQGSLPHFPKNSSLRNLILFGTGFSGTLPNSIGNLENLANVDISSCNF 347 (1007)
Q Consensus 268 L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l 347 (1007)
+|++++++. .+|..+..-..++.|++..|-....+.+...+.-+|+.|++++|.+. ..|..+..+..|+.|+++.|.+
T Consensus 3 vd~s~~~l~-~ip~~i~~~~~~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n~i 80 (1081)
T KOG0618|consen 3 VDASDEQLE-LIPEQILNNEALQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRNYI 80 (1081)
T ss_pred cccccccCc-ccchhhccHHHHHhhhccccccccCchHHhhheeeeEEeeccccccc-cCCchhhhHHHHhhcccchhhH
Confidence 566666666 56666555555777777777544433333333344555555555443 3444455555555555555555
Q ss_pred CCCCcccccCCCCCcEEEeccCcccCCCCCccCCCCCCEEEcccCCCCCccCCcccccCCCcCEEEccCCcCCCccCccc
Q 001842 348 TGPIPTSMANLTRLFHLDFSSNHFSGPIPSLGLSRNLSYLDLSSNDLTGRILFTPWEQLLNIKYVHLNYNSLSGSIPRSL 427 (1007)
Q Consensus 348 ~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~l 427 (1007)
. ..|....++.+|+++.|.+|.+. ..|.. +..+.+|++|+++.|.+. .+|..+
T Consensus 81 ~-~vp~s~~~~~~l~~lnL~~n~l~------------------------~lP~~-~~~lknl~~LdlS~N~f~-~~Pl~i 133 (1081)
T KOG0618|consen 81 R-SVPSSCSNMRNLQYLNLKNNRLQ------------------------SLPAS-ISELKNLQYLDLSFNHFG-PIPLVI 133 (1081)
T ss_pred h-hCchhhhhhhcchhheeccchhh------------------------cCchh-HHhhhcccccccchhccC-CCchhH
Confidence 4 34444455555555555555444 34444 555566666666666654 456666
Q ss_pred cCCCcccccccCCCcccccCccccccCcCCccEEEccCCCCCCCCChhhhccCCCCcEEECCCCccccccccCCCCCCCC
Q 001842 428 FLLPTLEMLLLSTNQFENQLPEFSNESSSVMNFLDLSGNRLEGPIPISIFFELRNLLTLDLSSNKFSRLKLASSKPRGTP 507 (1007)
Q Consensus 428 ~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~ls~n~l~~~i~~~~f~~l~~L~~L~L~~n~l~~l~~~~~~~~~~p 507 (1007)
..++.++.+..++|.....++. ..++.+++..|.+.+.++.++ ..+.. .|++++|.+..++
T Consensus 134 ~~lt~~~~~~~s~N~~~~~lg~------~~ik~~~l~~n~l~~~~~~~i-~~l~~--~ldLr~N~~~~~d---------- 194 (1081)
T KOG0618|consen 134 EVLTAEEELAASNNEKIQRLGQ------TSIKKLDLRLNVLGGSFLIDI-YNLTH--QLDLRYNEMEVLD---------- 194 (1081)
T ss_pred HhhhHHHHHhhhcchhhhhhcc------ccchhhhhhhhhcccchhcch-hhhhe--eeecccchhhhhh----------
Confidence 6666666666666622211211 115666666666666666555 44444 5777777665332
Q ss_pred CCCCCCCccEEEcCCCccccchhhhHhhccccceEEeccCCcccCCCcccccccCCeEecccccccccCCCC---CCCCC
Q 001842 508 NLNKQSKLSSLDLSDNQISGEIPNWIWEFSANLVFLNLSHNLLESLQEPYFIAGVGLLDLHSNELQGSIPYM---SPNTS 584 (1007)
Q Consensus 508 ~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~~~~L~~L~Ls~N~l~~l~~~~~~~~L~~L~l~~N~l~~~~~~~---~~~L~ 584 (1007)
+..+.+|+.+....|+++ .+. ...++++.|+.++|.++.+.......+++++++++|++++.. .+ ..+++
T Consensus 195 -ls~~~~l~~l~c~rn~ls-~l~----~~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~~lp-~wi~~~~nle 267 (1081)
T KOG0618|consen 195 -LSNLANLEVLHCERNQLS-ELE----ISGPSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLSNLP-EWIGACANLE 267 (1081)
T ss_pred -hhhccchhhhhhhhcccc-eEE----ecCcchheeeeccCcceeeccccccccceeeecchhhhhcch-HHHHhcccce
Confidence 345566666666666665 221 112346666666666665444444455666666666655443 32 34666
Q ss_pred eEEecCCcCcCCCccccccCCCceEEEcccCcccccCCccccCCCCCCEEEccCCcccccCCcchhhcCcCccceEEccC
Q 001842 585 YMDYSNNNFTTIPADIGNFMSGTIFFSAANNSLTGVIPQSVCNATYFSVLDLSNNSLSGTIPTCLITNSSRTLGVLNLRG 664 (1007)
Q Consensus 585 ~L~ls~n~l~~i~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~Ls~ 664 (1007)
.++..+|+++.+|..++. .++|+.+.+..|.+. .+|......+.|+.|||..|++. ..|+.+......+|..|+.+.
T Consensus 268 ~l~~n~N~l~~lp~ri~~-~~~L~~l~~~~nel~-yip~~le~~~sL~tLdL~~N~L~-~lp~~~l~v~~~~l~~ln~s~ 344 (1081)
T KOG0618|consen 268 ALNANHNRLVALPLRISR-ITSLVSLSAAYNELE-YIPPFLEGLKSLRTLDLQSNNLP-SLPDNFLAVLNASLNTLNVSS 344 (1081)
T ss_pred EecccchhHHhhHHHHhh-hhhHHHHHhhhhhhh-hCCCcccccceeeeeeehhcccc-ccchHHHhhhhHHHHHHhhhh
Confidence 666666666666666654 566666666666666 34445556667777777777766 555544433322456666666
Q ss_pred CcCccccCCCcCCCCCccEEeccCCcccccccccccCCCCCcEEeCCCCcCCccchhhhhcCCCCcEEECCCccCccccC
Q 001842 665 NSLNGTLSDRVPGICGLQILDLNGNQLEGMVPKSLANCKMLQVLDLGNNNFSKKFPCWLKNASSLQVLVLRSNNFSGNIS 744 (1007)
Q Consensus 665 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~ 744 (1007)
|++.......=..++.|+.|++.+|.++...-..+.+...|++|+|++|++.......+.++..|++|+|+||+++..
T Consensus 345 n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~L-- 422 (1081)
T KOG0618|consen 345 NKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTL-- 422 (1081)
T ss_pred ccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhhhh--
Confidence 666533322222345566667777777666555666666677777777766544444555666666666666666533
Q ss_pred CCCCCCCCCCCcEEECCCCcCcccCchHHHHhHHHhhhhccccccccccccccccCcceeeeeEEEEEecceeeeeeccc
Q 001842 745 CPRNNVSWPLLQIIDLASNKFSGRLSKKWLLTLEKMMNAETKSGSELKHLQYGFMGGYQFYQVTVTVTVKSVEILVRKVS 824 (1007)
Q Consensus 745 ~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 824 (1007)
|..+.+++.|++|...+|.
T Consensus 423 -p~tva~~~~L~tL~ahsN~------------------------------------------------------------ 441 (1081)
T KOG0618|consen 423 -PDTVANLGRLHTLRAHSNQ------------------------------------------------------------ 441 (1081)
T ss_pred -hHHHHhhhhhHHHhhcCCc------------------------------------------------------------
Confidence 4444444444444444444
Q ss_pred cceEEEEcccccccCCCcccccCCCCCCEEeCCCCcccc-cCCcCccCCCCCCEEeCCCccccccCCccCcCCCCCCeEE
Q 001842 825 NIFTSIDFSSNNFEGPIPEEMGRFKSLYALNLSQNVLTG-SIPSSFGNLEQIESLDLSMNNLSGKIPAPLANLNFLSVLN 903 (1007)
Q Consensus 825 ~~l~~ldLs~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g-~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~l~ 903 (1007)
+. ..| ++.+++.|+++|+|.|+++- .+|..... ++|++|||++|.=.-.--..|..+.++..++
T Consensus 442 ------------l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~-p~LkyLdlSGN~~l~~d~~~l~~l~~l~~~~ 506 (1081)
T KOG0618|consen 442 ------------LL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPS-PNLKYLDLSGNTRLVFDHKTLKVLKSLSQMD 506 (1081)
T ss_pred ------------ee-ech-hhhhcCcceEEecccchhhhhhhhhhCCC-cccceeeccCCcccccchhhhHHhhhhhhee
Confidence 43 445 56667777777777777763 24443333 6777777777763222234455555666666
Q ss_pred ccCC
Q 001842 904 LSYN 907 (1007)
Q Consensus 904 ls~N 907 (1007)
+.-|
T Consensus 507 i~~~ 510 (1081)
T KOG0618|consen 507 ITLN 510 (1081)
T ss_pred cccC
Confidence 6655
No 8
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.97 E-value=3.5e-34 Score=322.38 Aligned_cols=477 Identities=30% Similarity=0.322 Sum_probs=287.9
Q ss_pred EccCcCCCCcchhhhcCCCCCCEEECCCCCCCCCCchhhhcCCCCCCEEeccCCcCCcccchhccCCCCCCEEeCCCCCC
Q 001842 220 SLSRCELSGPINQYLANLRSLSAIRLPNNYGLSSPVPEFLANFSHLTALDLGDCQLQGKFPEKILQVPTLETLDLSDNPS 299 (1007)
Q Consensus 220 ~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~ 299 (1007)
|++.+.+. .+|..+-.-..++.|++..|.-+... .++....-+|+.|++++|++. .+|..+..+.+|+.|+++.|.+
T Consensus 4 d~s~~~l~-~ip~~i~~~~~~~~ln~~~N~~l~~p-l~~~~~~v~L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n~i 80 (1081)
T KOG0618|consen 4 DASDEQLE-LIPEQILNNEALQILNLRRNSLLSRP-LEFVEKRVKLKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRNYI 80 (1081)
T ss_pred ccccccCc-ccchhhccHHHHHhhhccccccccCc-hHHhhheeeeEEeeccccccc-cCCchhhhHHHHhhcccchhhH
Confidence 44444444 33444444444677777776222222 334444555888888887776 6777777788888888887754
Q ss_pred CCCCCCCCCCCCCCcEEEecCCCCcccccccccCCCCCCEEEccCCcCCCCCcccccCCCCCcEEEeccCcccCCCCCcc
Q 001842 300 LQGSLPHFPKNSSLRNLILFGTGFSGTLPNSIGNLENLANVDISSCNFTGPIPTSMANLTRLFHLDFSSNHFSGPIPSLG 379 (1007)
Q Consensus 300 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~ 379 (1007)
.... .....+.+|+++.|.+|.+. ..|.++..+++|+.|+++.|.+. .+|..+..++.++.+..++|......+.
T Consensus 81 ~~vp-~s~~~~~~l~~lnL~~n~l~-~lP~~~~~lknl~~LdlS~N~f~-~~Pl~i~~lt~~~~~~~s~N~~~~~lg~-- 155 (1081)
T KOG0618|consen 81 RSVP-SSCSNMRNLQYLNLKNNRLQ-SLPASISELKNLQYLDLSFNHFG-PIPLVIEVLTAEEELAASNNEKIQRLGQ-- 155 (1081)
T ss_pred hhCc-hhhhhhhcchhheeccchhh-cCchhHHhhhcccccccchhccC-CCchhHHhhhHHHHHhhhcchhhhhhcc--
Confidence 4333 34445677777777776665 67888888899999999999887 6788888888888888888833222222
Q ss_pred CCCCCCEEEcccCCCCCccCCcccccCCCcCEEEccCCcCCCccCccccCCCcccccccCCCcccccCccccccCcCCcc
Q 001842 380 LSRNLSYLDLSSNDLTGRILFTPWEQLLNIKYVHLNYNSLSGSIPRSLFLLPTLEMLLLSTNQFENQLPEFSNESSSVMN 459 (1007)
Q Consensus 380 ~~~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~ 459 (1007)
..++.+++..|.+.+.++.. +..++. .+++.+|.+. -..+.++++|+.+....|++... ....++++
T Consensus 156 --~~ik~~~l~~n~l~~~~~~~-i~~l~~--~ldLr~N~~~---~~dls~~~~l~~l~c~rn~ls~l-----~~~g~~l~ 222 (1081)
T KOG0618|consen 156 --TSIKKLDLRLNVLGGSFLID-IYNLTH--QLDLRYNEME---VLDLSNLANLEVLHCERNQLSEL-----EISGPSLT 222 (1081)
T ss_pred --ccchhhhhhhhhcccchhcc-hhhhhe--eeecccchhh---hhhhhhccchhhhhhhhcccceE-----EecCcchh
Confidence 23777888888887777655 555555 6888888875 23566778888888888877621 12345566
Q ss_pred EEEccCCCCCCCCChhhhccCCCCcEEECCCCccccccccCCCCCCCCC-CCCCCCccEEEcCCCccccchhhhHhhccc
Q 001842 460 FLDLSGNRLEGPIPISIFFELRNLLTLDLSSNKFSRLKLASSKPRGTPN-LNKQSKLSSLDLSDNQISGEIPNWIWEFSA 538 (1007)
Q Consensus 460 ~L~ls~n~l~~~i~~~~f~~l~~L~~L~L~~n~l~~l~~~~~~~~~~p~-l~~l~~L~~L~Ls~n~l~~~ip~~~~~~~~ 538 (1007)
.|+.+.|.++...+. .--.+|+++++++|+++. +|. +..+.+|+.++..+|+++ .+|..++...
T Consensus 223 ~L~a~~n~l~~~~~~---p~p~nl~~~dis~n~l~~----------lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~- 287 (1081)
T KOG0618|consen 223 ALYADHNPLTTLDVH---PVPLNLQYLDISHNNLSN----------LPEWIGACANLEALNANHNRLV-ALPLRISRIT- 287 (1081)
T ss_pred eeeeccCcceeeccc---cccccceeeecchhhhhc----------chHHHHhcccceEecccchhHH-hhHHHHhhhh-
Confidence 666666666522221 223456666666666653 233 556666666666666664 6666555433
Q ss_pred cceEEeccCCcccCCCcccc-cccCCeEecccccccccCCCCC----CCCCeEEecCCcCcCCCccccccCCCceEEEcc
Q 001842 539 NLVFLNLSHNLLESLQEPYF-IAGVGLLDLHSNELQGSIPYMS----PNTSYMDYSNNNFTTIPADIGNFMSGTIFFSAA 613 (1007)
Q Consensus 539 ~L~~L~Ls~N~l~~l~~~~~-~~~L~~L~l~~N~l~~~~~~~~----~~L~~L~ls~n~l~~i~~~~~~~~~~L~~L~l~ 613 (1007)
+|+.|.+.+|.++.++...- .+.++.|||..|++....+..+ ..++.++.+.|++...|..-....+.|+.|++.
T Consensus 288 ~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~Lyla 367 (1081)
T KOG0618|consen 288 SLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLA 367 (1081)
T ss_pred hHHHHHhhhhhhhhCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHh
Confidence 46666666666666655443 5556666666666554333221 134455556666665554444445556666666
Q ss_pred cCcccccCCccccCCCCCCEEEccCCcccccCCcch-hhcCcCccceEEccCCcCccccCCCcCCCCCccEEeccCCccc
Q 001842 614 NNSLTGVIPQSVCNATYFSVLDLSNNSLSGTIPTCL-ITNSSRTLGVLNLRGNSLNGTLSDRVPGICGLQILDLNGNQLE 692 (1007)
Q Consensus 614 ~n~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~~-~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 692 (1007)
+|.++...-+.+.+.+.|+.|+|++|++. .+|+.. .+.. .|++|+||+|+++ .+|.++..+..|++|...+|++.
T Consensus 368 nN~Ltd~c~p~l~~~~hLKVLhLsyNrL~-~fpas~~~kle--~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~ 443 (1081)
T KOG0618|consen 368 NNHLTDSCFPVLVNFKHLKVLHLSYNRLN-SFPASKLRKLE--ELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL 443 (1081)
T ss_pred cCcccccchhhhccccceeeeeecccccc-cCCHHHHhchH--HhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee
Confidence 66666655555666666666666666665 444433 2222 5666666666665 34455666666666666666666
Q ss_pred ccccccccCCCCCcEEeCCCCcCCccchhhhhcCCCCcEEECCCcc
Q 001842 693 GMVPKSLANCKMLQVLDLGNNNFSKKFPCWLKNASSLQVLVLRSNN 738 (1007)
Q Consensus 693 ~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~ 738 (1007)
..| .+..++.|+.+|+|.|+++...-..-..-++|++||+++|.
T Consensus 444 -~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 444 -SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNT 487 (1081)
T ss_pred -ech-hhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCc
Confidence 444 55566666666666666653322211112566666666665
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.96 E-value=1.3e-31 Score=287.26 Aligned_cols=369 Identities=28% Similarity=0.377 Sum_probs=295.4
Q ss_pred ccCCCCCeeeCCCCCCCCCCCCccccCCCCCCEEeCCCCCCCccCCccccCCCCCCEEeCCCCCCCCCccccccchHHhh
Q 001842 104 FSLQYLRSLNLGFTLFSGIQIPSRLANLTNLTYLNLSQSGFIQDIPIEISSLTRLVTLDLSAEPSGGFSFLEISNLSLFL 183 (1007)
Q Consensus 104 ~~l~~L~~L~Ls~n~~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~lp~~l~~l~~L~~L~Ls~n~~~~l~~~~~~~~~~~l 183 (1007)
+-|+..|-.|+++|+|+|..+|..+..++.+++|.|....+ ..+|+.++.|.+|++|.+++|+. ..+-..+
T Consensus 4 gVLpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L-~~vPeEL~~lqkLEHLs~~HN~L--------~~vhGEL 74 (1255)
T KOG0444|consen 4 GVLPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKL-EQVPEELSRLQKLEHLSMAHNQL--------ISVHGEL 74 (1255)
T ss_pred cccceeecccccCCcCCCCcCchhHHHhhheeEEEechhhh-hhChHHHHHHhhhhhhhhhhhhh--------Hhhhhhh
Confidence 34667777888888888777888888888888888888774 46888888888899988888862 2333346
Q ss_pred ccCCCCceeecCCccccCccchhhHhhCCCCCCcEEEccCcCCCCcchhhhcCCCCCCEEECCCCCCCCCCchhhhcCCC
Q 001842 184 QNLTELRELHLDNVDLFASGTDWCKALSFLPNLQVLSLSRCELSGPINQYLANLRSLSAIRLPNNYGLSSPVPEFLANFS 263 (1007)
Q Consensus 184 ~~l~~L~~L~L~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~l~~l~ 263 (1007)
..++.||.+++..|++...+ .+..+-++..|+.|||+.|++. +.|..+..-+++-+|+|++| ++......-|.+++
T Consensus 75 s~Lp~LRsv~~R~N~LKnsG--iP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N-~IetIPn~lfinLt 150 (1255)
T KOG0444|consen 75 SDLPRLRSVIVRDNNLKNSG--IPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYN-NIETIPNSLFINLT 150 (1255)
T ss_pred ccchhhHHHhhhccccccCC--CCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccC-ccccCCchHHHhhH
Confidence 67788888888888876544 3566778899999999999887 56788888899999999999 77766556678899
Q ss_pred CCCEEeccCCcCCcccchhccCCCCCCEEeCCCCCCCCCCCCCCCCCCCCcEEEecCCCCc-ccccccccCCCCCCEEEc
Q 001842 264 HLTALDLGDCQLQGKFPEKILQVPTLETLDLSDNPSLQGSLPHFPKNSSLRNLILFGTGFS-GTLPNSIGNLENLANVDI 342 (1007)
Q Consensus 264 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~l~~l~~L~~L~L 342 (1007)
.|-.||||+|++. .+|+.+..+.+|++|+|++|++..-.+..+..+++|+.|.+++.+-+ ..+|.++..+.+|..+|+
T Consensus 151 DLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDl 229 (1255)
T KOG0444|consen 151 DLLFLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDL 229 (1255)
T ss_pred hHhhhccccchhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccc
Confidence 9999999999998 78888999999999999999987777777888889999999887654 468889999999999999
Q ss_pred cCCcCCCCCcccccCCCCCcEEEeccCcccCCCCCccCCCCCCEEEcccCCCCCccCCcccccCCCcCEEEccCCcCCC-
Q 001842 343 SSCNFTGPIPTSMANLTRLFHLDFSSNHFSGPIPSLGLSRNLSYLDLSSNDLTGRILFTPWEQLLNIKYVHLNYNSLSG- 421 (1007)
Q Consensus 343 s~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~- 421 (1007)
|.|++. ..|+.+.++++|+.|+|++|+++..--....-.+|+.|+++.|+++ .+|.. +..+++|+.|.+.+|+++-
T Consensus 230 S~N~Lp-~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt-~LP~a-vcKL~kL~kLy~n~NkL~Fe 306 (1255)
T KOG0444|consen 230 SENNLP-IVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQLT-VLPDA-VCKLTKLTKLYANNNKLTFE 306 (1255)
T ss_pred cccCCC-cchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccchhc-cchHH-HhhhHHHHHHHhccCccccc
Confidence 999998 7899999999999999999999854433333378889999999988 67766 8888888888888887653
Q ss_pred ccCccccCCCcccccccCCCcccccCccccccCcCCccEEEccCCCCCCCCChhhhccCCCCcEEECCCCcc
Q 001842 422 SIPRSLFLLPTLEMLLLSTNQFENQLPEFSNESSSVMNFLDLSGNRLEGPIPISIFFELRNLLTLDLSSNKF 493 (1007)
Q Consensus 422 ~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~ls~n~l~~~i~~~~f~~l~~L~~L~L~~n~l 493 (1007)
-+|..++.+.+|+.+..++|.+. .+|+. ...+..|+.|.++.|++. .+|..+ .-++.|+.||+..|.-
T Consensus 307 GiPSGIGKL~~Levf~aanN~LE-lVPEg-lcRC~kL~kL~L~~NrLi-TLPeaI-HlL~~l~vLDlreNpn 374 (1255)
T KOG0444|consen 307 GIPSGIGKLIQLEVFHAANNKLE-LVPEG-LCRCVKLQKLKLDHNRLI-TLPEAI-HLLPDLKVLDLRENPN 374 (1255)
T ss_pred CCccchhhhhhhHHHHhhccccc-cCchh-hhhhHHHHHhccccccee-echhhh-hhcCCcceeeccCCcC
Confidence 37888888888888888888876 34442 335667777777777766 567666 6677777777777653
No 10
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.95 E-value=7.3e-31 Score=281.56 Aligned_cols=362 Identities=25% Similarity=0.357 Sum_probs=240.8
Q ss_pred CCcEEEecCCCCc-ccccccccCCCCCCEEEccCCcCCCCCcccccCCCCCcEEEeccCcccCCCCCccCCCCCCEEEcc
Q 001842 312 SLRNLILFGTGFS-GTLPNSIGNLENLANVDISSCNFTGPIPTSMANLTRLFHLDFSSNHFSGPIPSLGLSRNLSYLDLS 390 (1007)
Q Consensus 312 ~L~~L~L~~n~l~-~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~ 390 (1007)
-.+-.++++|.++ +..|.....+++++.|.|...++. .+|+.++.+.+|++|.+++|++..........+.|+.+.+.
T Consensus 8 FVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R 86 (1255)
T KOG0444|consen 8 FVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVR 86 (1255)
T ss_pred eeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhh
Confidence 3445566666666 456777777777777777777766 67777777777777777777766444443344555555555
Q ss_pred cCCCCC-ccCCcccccCCCcCEEEccCCcCCCccCccccCCCcccccccCCCcccccCccccccCcCCccEEEccCCCCC
Q 001842 391 SNDLTG-RILFTPWEQLLNIKYVHLNYNSLSGSIPRSLFLLPTLEMLLLSTNQFENQLPEFSNESSSVMNFLDLSGNRLE 469 (1007)
Q Consensus 391 ~n~l~~-~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~ls~n~l~ 469 (1007)
.|++.. -||.. +-.+..|..||+++|++. +.|..+..-.+ +-.|++|+|+|.
T Consensus 87 ~N~LKnsGiP~d-iF~l~dLt~lDLShNqL~-EvP~~LE~AKn-------------------------~iVLNLS~N~Ie 139 (1255)
T KOG0444|consen 87 DNNLKNSGIPTD-IFRLKDLTILDLSHNQLR-EVPTNLEYAKN-------------------------SIVLNLSYNNIE 139 (1255)
T ss_pred ccccccCCCCch-hcccccceeeecchhhhh-hcchhhhhhcC-------------------------cEEEEcccCccc
Confidence 555542 13333 444444444455544444 34444444344 444555555554
Q ss_pred CCCChhhhccCCCCcEEECCCCccccccccCCCCCCCCC-CCCCCCccEEEcCCCccccchhhhHhhccccceEEeccCC
Q 001842 470 GPIPISIFFELRNLLTLDLSSNKFSRLKLASSKPRGTPN-LNKQSKLSSLDLSDNQISGEIPNWIWEFSANLVFLNLSHN 548 (1007)
Q Consensus 470 ~~i~~~~f~~l~~L~~L~L~~n~l~~l~~~~~~~~~~p~-l~~l~~L~~L~Ls~n~l~~~ip~~~~~~~~~L~~L~Ls~N 548 (1007)
.||..+|.+++.|-.||+++|++.. +|. ...+..|++|+|++|.+. ...-.-...+++|+.|.+++
T Consensus 140 -tIPn~lfinLtDLLfLDLS~NrLe~----------LPPQ~RRL~~LqtL~Ls~NPL~-hfQLrQLPsmtsL~vLhms~- 206 (1255)
T KOG0444|consen 140 -TIPNSLFINLTDLLFLDLSNNRLEM----------LPPQIRRLSMLQTLKLSNNPLN-HFQLRQLPSMTSLSVLHMSN- 206 (1255)
T ss_pred -cCCchHHHhhHhHhhhccccchhhh----------cCHHHHHHhhhhhhhcCCChhh-HHHHhcCccchhhhhhhccc-
Confidence 5666666666666666666666652 222 555666666666666553 11000000111233333332
Q ss_pred cccCCCcccccccCCeEeccccccc-ccCCCC---CCCCCeEEecCCcCcCCCccccccCCCceEEEcccCcccccCCcc
Q 001842 549 LLESLQEPYFIAGVGLLDLHSNELQ-GSIPYM---SPNTSYMDYSNNNFTTIPADIGNFMSGTIFFSAANNSLTGVIPQS 624 (1007)
Q Consensus 549 ~l~~l~~~~~~~~L~~L~l~~N~l~-~~~~~~---~~~L~~L~ls~n~l~~i~~~~~~~~~~L~~L~l~~n~l~~~~p~~ 624 (1007)
.+-+ ..+|.. ..+|..+|+|.|++..+|..++. +.+|+.|++|+|+|+.. ...
T Consensus 207 ---------------------TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~-l~~LrrLNLS~N~iteL-~~~ 263 (1255)
T KOG0444|consen 207 ---------------------TQRTLDNIPTSLDDLHNLRDVDLSENNLPIVPECLYK-LRNLRRLNLSGNKITEL-NMT 263 (1255)
T ss_pred ---------------------ccchhhcCCCchhhhhhhhhccccccCCCcchHHHhh-hhhhheeccCcCceeee-ecc
Confidence 2211 122222 34677888888888888887775 78899999999999843 334
Q ss_pred ccCCCCCCEEEccCCcccccCCcchhhcCcCccceEEccCCcCcc-ccCCCcCCCCCccEEeccCCcccccccccccCCC
Q 001842 625 VCNATYFSVLDLSNNSLSGTIPTCLITNSSRTLGVLNLRGNSLNG-TLSDRVPGICGLQILDLNGNQLEGMVPKSLANCK 703 (1007)
Q Consensus 625 ~~~~~~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~ 703 (1007)
.....+|+.|++|.|+++ .+|++++..+ .|+.|.+.+|+++- -+|+.++.+.+|+++..++|++. ..|+.+..|.
T Consensus 264 ~~~W~~lEtLNlSrNQLt-~LP~avcKL~--kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~ 339 (1255)
T KOG0444|consen 264 EGEWENLETLNLSRNQLT-VLPDAVCKLT--KLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCV 339 (1255)
T ss_pred HHHHhhhhhhccccchhc-cchHHHhhhH--HHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhH
Confidence 556678999999999998 8999998877 89999999999863 47889999999999999999998 8899999999
Q ss_pred CCcEEeCCCCcCCccchhhhhcCCCCcEEECCCccCccc
Q 001842 704 MLQVLDLGNNNFSKKFPCWLKNASSLQVLVLRSNNFSGN 742 (1007)
Q Consensus 704 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ 742 (1007)
.|+.|.|++|++. ..|..+.-++.|++|+++.|.=--.
T Consensus 340 kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnLVM 377 (1255)
T KOG0444|consen 340 KLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPNLVM 377 (1255)
T ss_pred HHHHhccccccee-echhhhhhcCCcceeeccCCcCccC
Confidence 9999999999995 6788899999999999999864433
No 11
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.91 E-value=8.6e-27 Score=239.24 Aligned_cols=399 Identities=21% Similarity=0.231 Sum_probs=250.9
Q ss_pred ccEEEccCCCCCCCCChhhhccCCCCcEEECCCCccccccccCCCCCCCCCCCCCCCccEEEcCC-CccccchhhhHhhc
Q 001842 458 MNFLDLSGNRLEGPIPISIFFELRNLLTLDLSSNKFSRLKLASSKPRGTPNLNKQSKLSSLDLSD-NQISGEIPNWIWEF 536 (1007)
Q Consensus 458 L~~L~ls~n~l~~~i~~~~f~~l~~L~~L~L~~n~l~~l~~~~~~~~~~p~l~~l~~L~~L~Ls~-n~l~~~ip~~~~~~ 536 (1007)
-..+++..|.|+ .||...|..+++|+.|+|++|+|+.|...+ |.++.++.+|-+.+ |+|+ .+|...|..
T Consensus 69 tveirLdqN~I~-~iP~~aF~~l~~LRrLdLS~N~Is~I~p~A--------F~GL~~l~~Lvlyg~NkI~-~l~k~~F~g 138 (498)
T KOG4237|consen 69 TVEIRLDQNQIS-SIPPGAFKTLHRLRRLDLSKNNISFIAPDA--------FKGLASLLSLVLYGNNKIT-DLPKGAFGG 138 (498)
T ss_pred ceEEEeccCCcc-cCChhhccchhhhceecccccchhhcChHh--------hhhhHhhhHHHhhcCCchh-hhhhhHhhh
Confidence 334555555555 677777777777777777777777554322 55666665555444 7776 777777777
Q ss_pred cccceEEeccCCcccCCCcccc--cccCCeEecccccccccCCCCCCCCCeEEecCCcCcCCCccccccCCCceEEEccc
Q 001842 537 SANLVFLNLSHNLLESLQEPYF--IAGVGLLDLHSNELQGSIPYMSPNTSYMDYSNNNFTTIPADIGNFMSGTIFFSAAN 614 (1007)
Q Consensus 537 ~~~L~~L~Ls~N~l~~l~~~~~--~~~L~~L~l~~N~l~~~~~~~~~~L~~L~ls~n~l~~i~~~~~~~~~~L~~L~l~~ 614 (1007)
+.+++.|.+.-|++..+....+ ++++. .|.+-+|.+..|+...+..+..++.+.+..
T Consensus 139 L~slqrLllNan~i~Cir~~al~dL~~l~---------------------lLslyDn~~q~i~~~tf~~l~~i~tlhlA~ 197 (498)
T KOG4237|consen 139 LSSLQRLLLNANHINCIRQDALRDLPSLS---------------------LLSLYDNKIQSICKGTFQGLAAIKTLHLAQ 197 (498)
T ss_pred HHHHHHHhcChhhhcchhHHHHHHhhhcc---------------------hhcccchhhhhhccccccchhccchHhhhc
Confidence 7777777777777766655443 23333 334444444455555555556666666666
Q ss_pred Cccc------------ccCCccccCCCCCCEEEccCCcccccCCcchhhcCcCccceE--Ec-cCCcCccccC-CCcCCC
Q 001842 615 NSLT------------GVIPQSVCNATYFSVLDLSNNSLSGTIPTCLITNSSRTLGVL--NL-RGNSLNGTLS-DRVPGI 678 (1007)
Q Consensus 615 n~l~------------~~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L--~L-s~N~l~~~~~-~~~~~l 678 (1007)
|.+. ...|..++......-..+.++++. .++..-+.+ +++.+ .+ +.+...++.| .+|..+
T Consensus 198 np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~-q~~a~kf~c---~~esl~s~~~~~d~~d~~cP~~cf~~L 273 (498)
T KOG4237|consen 198 NPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRIN-QEDARKFLC---SLESLPSRLSSEDFPDSICPAKCFKKL 273 (498)
T ss_pred CccccccccchhhhHHhhchhhcccceecchHHHHHHHhc-ccchhhhhh---hHHhHHHhhccccCcCCcChHHHHhhc
Confidence 5532 112222333333333333444443 222222211 22222 12 2222333333 468999
Q ss_pred CCccEEeccCCcccccccccccCCCCCcEEeCCCCcCCccchhhhhcCCCCcEEECCCccCccccCCCCCCCCCCCCcEE
Q 001842 679 CGLQILDLNGNQLEGMVPKSLANCKMLQVLDLGNNNFSKKFPCWLKNASSLQVLVLRSNNFSGNISCPRNNVSWPLLQII 758 (1007)
Q Consensus 679 ~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L 758 (1007)
++|+.|+|++|+|+++-+.+|.+...++.|.|..|++.......|.+++.|+.|+|.+|+|+... |..|..+.+|..|
T Consensus 274 ~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~--~~aF~~~~~l~~l 351 (498)
T KOG4237|consen 274 PNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVA--PGAFQTLFSLSTL 351 (498)
T ss_pred ccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEe--cccccccceeeee
Confidence 99999999999999999999999999999999999998888888999999999999999999877 8899999999999
Q ss_pred ECCCCcCcccCchHHHHhHHHhhhhccc-cc---cccccccccccCcceeeeeEEEEEecceeee------ee-ccccce
Q 001842 759 DLASNKFSGRLSKKWLLTLEKMMNAETK-SG---SELKHLQYGFMGGYQFYQVTVTVTVKSVEIL------VR-KVSNIF 827 (1007)
Q Consensus 759 ~Ls~N~l~g~~p~~~~~~l~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~-~~~~~l 827 (1007)
.|-.|+|.|.|...|++.|-.-...... .+ ..+..+++.......+ ...+.+.. +. ...+-+
T Consensus 352 ~l~~Np~~CnC~l~wl~~Wlr~~~~~~~~~Cq~p~~~~~~~~~dv~~~~~-------~c~~~ee~~~~~s~~cP~~c~c~ 424 (498)
T KOG4237|consen 352 NLLSNPFNCNCRLAWLGEWLRKKSVVGNPRCQSPGFVRQIPISDVAFGDF-------RCGGPEELGCLTSSPCPPPCTCL 424 (498)
T ss_pred ehccCcccCccchHHHHHHHhhCCCCCCCCCCCCchhccccchhcccccc-------ccCCccccCCCCCCCCCCCcchh
Confidence 9999999999999999998654331111 11 1111111111000000 00000000 00 000011
Q ss_pred -EEEEcccccccCCCcccccCCCCCCEEeCCCCcccccCCcCccCCCCCCEEeCCCccccccCCccCcCCCCCCeEEccC
Q 001842 828 -TSIDFSSNNFEGPIPEEMGRFKSLYALNLSQNVLTGSIPSSFGNLEQIESLDLSMNNLSGKIPAPLANLNFLSVLNLSY 906 (1007)
Q Consensus 828 -~~ldLs~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~l~ls~ 906 (1007)
+...-|++.+. .+|..+. ..-++|++.+|.++ .+|.+ .+++| .+|||+|+++..--..|++++.|.+|-+||
T Consensus 425 ~tVvRcSnk~lk-~lp~~iP--~d~telyl~gn~~~-~vp~~--~~~~l-~~dls~n~i~~Lsn~tf~n~tql~tlilsy 497 (498)
T KOG4237|consen 425 DTVVRCSNKLLK-LLPRGIP--VDVTELYLDGNAIT-SVPDE--LLRSL-LLDLSNNRISSLSNYTFSNMTQLSTLILSY 497 (498)
T ss_pred hhhHhhcccchh-hcCCCCC--chhHHHhcccchhc-ccCHH--HHhhh-hcccccCceehhhcccccchhhhheeEEec
Confidence 12233444444 5555443 35667899999999 78887 77888 899999999988888999999999999998
Q ss_pred C
Q 001842 907 N 907 (1007)
Q Consensus 907 N 907 (1007)
|
T Consensus 498 n 498 (498)
T KOG4237|consen 498 N 498 (498)
T ss_pred C
Confidence 7
No 12
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.89 E-value=5.8e-23 Score=241.53 Aligned_cols=80 Identities=26% Similarity=0.318 Sum_probs=48.1
Q ss_pred eEEEEcccccccCCCcccccCCCCCCEEeCCCCcccccCCcCccCCCCCCEEeCCCccccccCCccCcCCCCCCeEEccC
Q 001842 827 FTSIDFSSNNFEGPIPEEMGRFKSLYALNLSQNVLTGSIPSSFGNLEQIESLDLSMNNLSGKIPAPLANLNFLSVLNLSY 906 (1007)
Q Consensus 827 l~~ldLs~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~l~ls~ 906 (1007)
|+.||+++|+|++ +|... +.|+.|++|+|+|++ +|... .+|+.|||++|+|+ .+|..+.+++.|+.++|++
T Consensus 384 L~~LdLs~N~Lt~-LP~l~---s~L~~LdLS~N~Lss-IP~l~---~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~ 454 (788)
T PRK15387 384 LKELIVSGNRLTS-LPVLP---SELKELMVSGNRLTS-LPMLP---SGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEG 454 (788)
T ss_pred cceEEecCCcccC-CCCcc---cCCCEEEccCCcCCC-CCcch---hhhhhhhhccCccc-ccChHHhhccCCCeEECCC
Confidence 4455666666653 44322 456666666666663 55432 34566666666666 5666666666666777777
Q ss_pred CcccccCCC
Q 001842 907 NNLVGKIPT 915 (1007)
Q Consensus 907 N~L~g~iP~ 915 (1007)
|+|+|.+|.
T Consensus 455 N~Ls~~~~~ 463 (788)
T PRK15387 455 NPLSERTLQ 463 (788)
T ss_pred CCCCchHHH
Confidence 776666654
No 13
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.89 E-value=1.2e-22 Score=238.74 Aligned_cols=268 Identities=24% Similarity=0.297 Sum_probs=217.5
Q ss_pred cceEEeccCCcccCCCcccccccCCeEecccccccccCCCCCCCCCeEEecCCcCcCCCccccccCCCceEEEcccCccc
Q 001842 539 NLVFLNLSHNLLESLQEPYFIAGVGLLDLHSNELQGSIPYMSPNTSYMDYSNNNFTTIPADIGNFMSGTIFFSAANNSLT 618 (1007)
Q Consensus 539 ~L~~L~Ls~N~l~~l~~~~~~~~L~~L~l~~N~l~~~~~~~~~~L~~L~ls~n~l~~i~~~~~~~~~~L~~L~l~~n~l~ 618 (1007)
.-..|++++|.++.+|... .+.++.|++++|+++. +|..+++|++|++++|+|+.+|.. .++|+.|++++|.++
T Consensus 202 ~~~~LdLs~~~LtsLP~~l-~~~L~~L~L~~N~Lt~-LP~lp~~Lk~LdLs~N~LtsLP~l----p~sL~~L~Ls~N~L~ 275 (788)
T PRK15387 202 GNAVLNVGESGLTTLPDCL-PAHITTLVIPDNNLTS-LPALPPELRTLEVSGNQLTSLPVL----PPGLLELSIFSNPLT 275 (788)
T ss_pred CCcEEEcCCCCCCcCCcch-hcCCCEEEccCCcCCC-CCCCCCCCcEEEecCCccCcccCc----ccccceeeccCCchh
Confidence 4678999999999998754 4589999999999986 666789999999999999999863 468999999999998
Q ss_pred ccCCccccCCCCCCEEEccCCcccccCCcchhhcCcCccceEEccCCcCccccCCCcCCCCCccEEeccCCccccccccc
Q 001842 619 GVIPQSVCNATYFSVLDLSNNSLSGTIPTCLITNSSRTLGVLNLRGNSLNGTLSDRVPGICGLQILDLNGNQLEGMVPKS 698 (1007)
Q Consensus 619 ~~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~ 698 (1007)
. +|.. .++|+.|++++|+++ .+|... ++|+.|++++|++++. |.. ..+|+.|++++|++++ +|..
T Consensus 276 ~-Lp~l---p~~L~~L~Ls~N~Lt-~LP~~p-----~~L~~LdLS~N~L~~L-p~l---p~~L~~L~Ls~N~L~~-LP~l 340 (788)
T PRK15387 276 H-LPAL---PSGLCKLWIFGNQLT-SLPVLP-----PGLQELSVSDNQLASL-PAL---PSELCKLWAYNNQLTS-LPTL 340 (788)
T ss_pred h-hhhc---hhhcCEEECcCCccc-cccccc-----cccceeECCCCccccC-CCC---cccccccccccCcccc-cccc
Confidence 5 3432 357889999999998 566532 3899999999999964 432 2468899999999985 5542
Q ss_pred ccCCCCCcEEeCCCCcCCccchhhhhcCCCCcEEECCCccCccccCCCCCCCCCCCCcEEECCCCcCcccCchHHHHhHH
Q 001842 699 LANCKMLQVLDLGNNNFSKKFPCWLKNASSLQVLVLRSNNFSGNISCPRNNVSWPLLQIIDLASNKFSGRLSKKWLLTLE 778 (1007)
Q Consensus 699 l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~~l~ 778 (1007)
..+|+.|+|++|+|++ +|.. ..+|+.|++++|++++. |.. .++|+.|++++|++++ +|.
T Consensus 341 ---p~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~~L---P~l---~~~L~~LdLs~N~Lt~-LP~------- 399 (788)
T PRK15387 341 ---PSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLTSL---PAL---PSGLKELIVSGNRLTS-LPV------- 399 (788)
T ss_pred ---ccccceEecCCCccCC-CCCC---CcccceehhhccccccC---ccc---ccccceEEecCCcccC-CCC-------
Confidence 2579999999999986 4532 46788999999999863 432 3579999999999974 442
Q ss_pred HhhhhccccccccccccccccCcceeeeeEEEEEecceeeeeeccccceEEEEcccccccCCCcccccCCCCCCEEeCCC
Q 001842 779 KMMNAETKSGSELKHLQYGFMGGYQFYQVTVTVTVKSVEILVRKVSNIFTSIDFSSNNFEGPIPEEMGRFKSLYALNLSQ 858 (1007)
Q Consensus 779 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ldLs~N~l~g~ip~~~~~l~~L~~L~Ls~ 858 (1007)
....|+.||+++|+|++ +|... .+|+.|+|++
T Consensus 400 --------------------------------------------l~s~L~~LdLS~N~Lss-IP~l~---~~L~~L~Ls~ 431 (788)
T PRK15387 400 --------------------------------------------LPSELKELMVSGNRLTS-LPMLP---SGLLSLSVYR 431 (788)
T ss_pred --------------------------------------------cccCCCEEEccCCcCCC-CCcch---hhhhhhhhcc
Confidence 12357889999999995 77643 4688899999
Q ss_pred CcccccCCcCccCCCCCCEEeCCCccccccCCccCcCCC
Q 001842 859 NVLTGSIPSSFGNLEQIESLDLSMNNLSGKIPAPLANLN 897 (1007)
Q Consensus 859 N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~ 897 (1007)
|+|+ .+|..++++++|+.|||++|.|+|.+|..+..++
T Consensus 432 NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L~~l~ 469 (788)
T PRK15387 432 NQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREIT 469 (788)
T ss_pred Cccc-ccChHHhhccCCCeEECCCCCCCchHHHHHHHHh
Confidence 9999 7999999999999999999999999999885554
No 14
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.87 E-value=2.9e-24 Score=220.71 Aligned_cols=410 Identities=22% Similarity=0.227 Sum_probs=208.7
Q ss_pred CCCCEEEcccCCCCCccCCcccccCCCcCEEEccCCcCCCccCccccCCCcccccccCC-CcccccCccccccCcCCccE
Q 001842 382 RNLSYLDLSSNDLTGRILFTPWEQLLNIKYVHLNYNSLSGSIPRSLFLLPTLEMLLLST-NQFENQLPEFSNESSSVMNF 460 (1007)
Q Consensus 382 ~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~-n~l~~~~~~~~~~~~~~L~~ 460 (1007)
+.-.+++|..|+|+ .||..+|+.+++|++|||++|+|+...|.+|..+++|.+|-+.+ |+|+
T Consensus 67 ~~tveirLdqN~I~-~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~---------------- 129 (498)
T KOG4237|consen 67 PETVEIRLDQNQIS-SIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT---------------- 129 (498)
T ss_pred CcceEEEeccCCcc-cCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh----------------
Confidence 45567888888888 78888899999999999999999888888888888888777766 6776
Q ss_pred EEccCCCCCCCCChhhhccCCCCcEEECCCCccccccccCCCCCCCCCCCCCCCccEEEcCCCccccchhhhHhhccccc
Q 001842 461 LDLSGNRLEGPIPISIFFELRNLLTLDLSSNKFSRLKLASSKPRGTPNLNKQSKLSSLDLSDNQISGEIPNWIWEFSANL 540 (1007)
Q Consensus 461 L~ls~n~l~~~i~~~~f~~l~~L~~L~L~~n~l~~l~~~~~~~~~~p~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~~~~L 540 (1007)
.+|...|.++.+++.|.+.-|++..+.... |..++++..|.+.+|.+. .++...+.....+
T Consensus 130 ----------~l~k~~F~gL~slqrLllNan~i~Cir~~a--------l~dL~~l~lLslyDn~~q-~i~~~tf~~l~~i 190 (498)
T KOG4237|consen 130 ----------DLPKGAFGGLSSLQRLLLNANHINCIRQDA--------LRDLPSLSLLSLYDNKIQ-SICKGTFQGLAAI 190 (498)
T ss_pred ----------hhhhhHhhhHHHHHHHhcChhhhcchhHHH--------HHHhhhcchhcccchhhh-hhccccccchhcc
Confidence 344444455555555555444444222111 444445555555555554 4444444444445
Q ss_pred eEEeccCCcccCC-CcccccccCCeEecccccccccCCCCCCCCCeEEecCCcCcCCCccccccC-CCceEEEcccCccc
Q 001842 541 VFLNLSHNLLESL-QEPYFIAGVGLLDLHSNELQGSIPYMSPNTSYMDYSNNNFTTIPADIGNFM-SGTIFFSAANNSLT 618 (1007)
Q Consensus 541 ~~L~Ls~N~l~~l-~~~~~~~~L~~L~l~~N~l~~~~~~~~~~L~~L~ls~n~l~~i~~~~~~~~-~~L~~L~l~~n~l~ 618 (1007)
+.+.+..|.+... .-.+... ++..|.+. ..++.-.....+.++++..++..-|... ..+..--.+.+...
T Consensus 191 ~tlhlA~np~icdCnL~wla~-----~~a~~~ie---tsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d 262 (498)
T KOG4237|consen 191 KTLHLAQNPFICDCNLPWLAD-----DLAMNPIE---TSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPD 262 (498)
T ss_pred chHhhhcCccccccccchhhh-----HHhhchhh---cccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcC
Confidence 5555544442211 0000000 00000000 0000011111222333333333222110 00100011111122
Q ss_pred ccCC-ccccCCCCCCEEEccCCcccccCCcchhhcCcCccceEEccCCcCccccCCCcCCCCCccEEeccCCcccccccc
Q 001842 619 GVIP-QSVCNATYFSVLDLSNNSLSGTIPTCLITNSSRTLGVLNLRGNSLNGTLSDRVPGICGLQILDLNGNQLEGMVPK 697 (1007)
Q Consensus 619 ~~~p-~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~ 697 (1007)
++-| ..|..++ +|+.|+|++|+++++-+.+|.+...+++|.|..|+|...-..
T Consensus 263 ~~cP~~cf~~L~--------------------------~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~ 316 (498)
T KOG4237|consen 263 SICPAKCFKKLP--------------------------NLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSG 316 (498)
T ss_pred CcChHHHHhhcc--------------------------cceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHH
Confidence 2222 2233344 555555555555555555555555555555555555555555
Q ss_pred cccCCCCCcEEeCCCCcCCccchhhhhcCCCCcEEECCCccCccc---------------cCCCCCCCCCCCCcEEECCC
Q 001842 698 SLANCKMLQVLDLGNNNFSKKFPCWLKNASSLQVLVLRSNNFSGN---------------ISCPRNNVSWPLLQIIDLAS 762 (1007)
Q Consensus 698 ~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~---------------~~~~~~~~~l~~L~~L~Ls~ 762 (1007)
.|.++..|++|+|.+|+|+...|..|..+.+|..|+|-+|.+... +..|. -..-..++.+++++
T Consensus 317 ~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~wl~~Wlr~~~~~~~~~-Cq~p~~~~~~~~~d 395 (498)
T KOG4237|consen 317 MFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLAWLGEWLRKKSVVGNPR-CQSPGFVRQIPISD 395 (498)
T ss_pred hhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCccchHHHHHHHhhCCCCCCCC-CCCCchhccccchh
Confidence 555555555555555555555555555555555555555554210 00011 01112345555555
Q ss_pred CcC---cccCchHHHHhHHHhhhhccccccccccccccccCcceeeeeEEEEEecceeeeeeccccceEEEEcccccccC
Q 001842 763 NKF---SGRLSKKWLLTLEKMMNAETKSGSELKHLQYGFMGGYQFYQVTVTVTVKSVEILVRKVSNIFTSIDFSSNNFEG 839 (1007)
Q Consensus 763 N~l---~g~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ldLs~N~l~g 839 (1007)
+.+ ++.-|.+.- ......-+.. ..-...-+....++......++....+.+.+.+|.++
T Consensus 396 v~~~~~~c~~~ee~~-------------~~~s~~cP~~----c~c~~tVvRcSnk~lk~lp~~iP~d~telyl~gn~~~- 457 (498)
T KOG4237|consen 396 VAFGDFRCGGPEELG-------------CLTSSPCPPP----CTCLDTVVRCSNKLLKLLPRGIPVDVTELYLDGNAIT- 457 (498)
T ss_pred ccccccccCCccccC-------------CCCCCCCCCC----cchhhhhHhhcccchhhcCCCCCchhHHHhcccchhc-
Confidence 543 333221100 0000000000 0000000111223333333334445677899999999
Q ss_pred CCcccccCCCCCCEEeCCCCcccccCCcCccCCCCCCEEeCCCc
Q 001842 840 PIPEEMGRFKSLYALNLSQNVLTGSIPSSFGNLEQIESLDLSMN 883 (1007)
Q Consensus 840 ~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N 883 (1007)
.+|.+ .+++| .+|||+|+++..--..|.+|++|.+|-||+|
T Consensus 458 ~vp~~--~~~~l-~~dls~n~i~~Lsn~tf~n~tql~tlilsyn 498 (498)
T KOG4237|consen 458 SVPDE--LLRSL-LLDLSNNRISSLSNYTFSNMTQLSTLILSYN 498 (498)
T ss_pred ccCHH--HHhhh-hcccccCceehhhcccccchhhhheeEEecC
Confidence 78887 67788 8999999999888899999999999999987
No 15
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.87 E-value=9.4e-21 Score=241.57 Aligned_cols=341 Identities=20% Similarity=0.270 Sum_probs=177.9
Q ss_pred CChhhhccCCCCcEEECCCCccccccccCCCCCCCCC-CCCC-CCccEEEcCCCccccchhhhHhhccccceEEeccCCc
Q 001842 472 IPISIFFELRNLLTLDLSSNKFSRLKLASSKPRGTPN-LNKQ-SKLSSLDLSDNQISGEIPNWIWEFSANLVFLNLSHNL 549 (1007)
Q Consensus 472 i~~~~f~~l~~L~~L~L~~n~l~~l~~~~~~~~~~p~-l~~l-~~L~~L~Ls~n~l~~~ip~~~~~~~~~L~~L~Ls~N~ 549 (1007)
+....|.++++|+.|.+..+...... .....+|. +..+ .+|+.|.+.++.+. .+|..+ .+.+|+.|++++|+
T Consensus 549 i~~~aF~~m~~L~~L~~~~~~~~~~~---~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f--~~~~L~~L~L~~s~ 622 (1153)
T PLN03210 549 IHENAFKGMRNLLFLKFYTKKWDQKK---EVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF--RPENLVKLQMQGSK 622 (1153)
T ss_pred ecHHHHhcCccccEEEEecccccccc---cceeecCcchhhcCcccEEEEecCCCCC-CCCCcC--CccCCcEEECcCcc
Confidence 44556677788888877665432100 00012232 3333 35667777776665 666554 23466777777776
Q ss_pred ccCCCccc-ccccCCeEecccccccccCCCC--CCCCCeEEecCCc-CcCCCccccccCCCceEEEcccCcccccCCccc
Q 001842 550 LESLQEPY-FIAGVGLLDLHSNELQGSIPYM--SPNTSYMDYSNNN-FTTIPADIGNFMSGTIFFSAANNSLTGVIPQSV 625 (1007)
Q Consensus 550 l~~l~~~~-~~~~L~~L~l~~N~l~~~~~~~--~~~L~~L~ls~n~-l~~i~~~~~~~~~~L~~L~l~~n~l~~~~p~~~ 625 (1007)
+..++... .+++|+.++++++...+.+|.. .++|+.|++++|. +..+|..+. .+++|+.|++++|..-+.+|..+
T Consensus 623 l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~lp~si~-~L~~L~~L~L~~c~~L~~Lp~~i 701 (1153)
T PLN03210 623 LEKLWDGVHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELPSSIQ-YLNKLEDLDMSRCENLEILPTGI 701 (1153)
T ss_pred ccccccccccCCCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCccccchhhh-ccCCCCEEeCCCCCCcCccCCcC
Confidence 66654332 3455666666655444444432 3455666665543 345554432 35555666665554444445433
Q ss_pred cCCCCCCEEEccCCcccccCCcchhhcCcCccceEEccCCcCccccCCCcCCCCCccEEeccCCcc-------ccccccc
Q 001842 626 CNATYFSVLDLSNNSLSGTIPTCLITNSSRTLGVLNLRGNSLNGTLSDRVPGICGLQILDLNGNQL-------EGMVPKS 698 (1007)
Q Consensus 626 ~~~~~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l-------~~~~p~~ 698 (1007)
++++|+.|++++|...+.+|... .+|++|++++|.+.. +|..+ .+++|+.|++.++.. ....|..
T Consensus 702 -~l~sL~~L~Lsgc~~L~~~p~~~-----~nL~~L~L~~n~i~~-lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~ 773 (1153)
T PLN03210 702 -NLKSLYRLNLSGCSRLKSFPDIS-----TNISWLDLDETAIEE-FPSNL-RLENLDELILCEMKSEKLWERVQPLTPLM 773 (1153)
T ss_pred -CCCCCCEEeCCCCCCcccccccc-----CCcCeeecCCCcccc-ccccc-cccccccccccccchhhccccccccchhh
Confidence 45556666665554433444321 155556666655542 33332 345555555554221 1111112
Q ss_pred ccCCCCCcEEeCCCCcCCccchhhhhcCCCCcEEECCCccCccccCCCCCCCCCCCCcEEECCCCcCcccCchHHHHhHH
Q 001842 699 LANCKMLQVLDLGNNNFSKKFPCWLKNASSLQVLVLRSNNFSGNISCPRNNVSWPLLQIIDLASNKFSGRLSKKWLLTLE 778 (1007)
Q Consensus 699 l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~~l~ 778 (1007)
+..+++|+.|++++|...+.+|.+++++++|+.|++++|..-+.+ |... ++++|+.|++++|.....+|.
T Consensus 774 ~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~L--P~~~-~L~sL~~L~Ls~c~~L~~~p~------- 843 (1153)
T PLN03210 774 TMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETL--PTGI-NLESLESLDLSGCSRLRTFPD------- 843 (1153)
T ss_pred hhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCee--CCCC-CccccCEEECCCCCccccccc-------
Confidence 223345666666666555555666666666666666655433333 3333 455666666665543322221
Q ss_pred HhhhhccccccccccccccccCcceeeeeEEEEEecceeeeeeccccceEEEEcccccccCCCcccccCCCCCCEEeCCC
Q 001842 779 KMMNAETKSGSELKHLQYGFMGGYQFYQVTVTVTVKSVEILVRKVSNIFTSIDFSSNNFEGPIPEEMGRFKSLYALNLSQ 858 (1007)
Q Consensus 779 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ldLs~N~l~g~ip~~~~~l~~L~~L~Ls~ 858 (1007)
...+++.|+|++|.++ .+|.+++.+++|+.|+|++
T Consensus 844 --------------------------------------------~~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~ 878 (1153)
T PLN03210 844 --------------------------------------------ISTNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNG 878 (1153)
T ss_pred --------------------------------------------cccccCEeECCCCCCc-cChHHHhcCCCCCEEECCC
Confidence 1234556666666666 4666666666666666665
Q ss_pred -CcccccCCcCccCCCCCCEEeCCCc
Q 001842 859 -NVLTGSIPSSFGNLEQIESLDLSMN 883 (1007)
Q Consensus 859 -N~l~g~ip~~~~~l~~L~~LdLs~N 883 (1007)
|+++ .+|..++.++.|+.|+++++
T Consensus 879 C~~L~-~l~~~~~~L~~L~~L~l~~C 903 (1153)
T PLN03210 879 CNNLQ-RVSLNISKLKHLETVDFSDC 903 (1153)
T ss_pred CCCcC-ccCcccccccCCCeeecCCC
Confidence 4444 35666666666666666665
No 16
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.86 E-value=2.6e-20 Score=237.55 Aligned_cols=340 Identities=20% Similarity=0.268 Sum_probs=268.3
Q ss_pred cCCcccccCCCcCEEEccCCc------CCCccCccccCCC-cccccccCCCcccccCccccccCcCCccEEEccCCCCCC
Q 001842 398 ILFTPWEQLLNIKYVHLNYNS------LSGSIPRSLFLLP-TLEMLLLSTNQFENQLPEFSNESSSVMNFLDLSGNRLEG 470 (1007)
Q Consensus 398 i~~~~~~~l~~L~~L~L~~n~------l~~~~~~~l~~l~-~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~ls~n~l~~ 470 (1007)
+...+|..+++|+.|.+..+. +...+|..+..++ +|+.|++.++.+. .+|... ...+|+.|++++|.+.
T Consensus 549 i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f--~~~~L~~L~L~~s~l~- 624 (1153)
T PLN03210 549 IHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF--RPENLVKLQMQGSKLE- 624 (1153)
T ss_pred ecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC--CccCCcEEECcCcccc-
Confidence 334457788899999886653 2334666676664 6999999998876 455433 4678999999999887
Q ss_pred CCChhhhccCCCCcEEECCCCccccccccCCCCCCCCCCCCCCCccEEEcCCCccccchhhhHhhccccceEEeccCC-c
Q 001842 471 PIPISIFFELRNLLTLDLSSNKFSRLKLASSKPRGTPNLNKQSKLSSLDLSDNQISGEIPNWIWEFSANLVFLNLSHN-L 549 (1007)
Q Consensus 471 ~i~~~~f~~l~~L~~L~L~~n~l~~l~~~~~~~~~~p~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~~~~L~~L~Ls~N-~ 549 (1007)
.++.++ ..+++|+.|+++++... ..+|.+..+++|++|++++|.....+|..+.. +++|+.|++++| .
T Consensus 625 ~L~~~~-~~l~~Lk~L~Ls~~~~l---------~~ip~ls~l~~Le~L~L~~c~~L~~lp~si~~-L~~L~~L~L~~c~~ 693 (1153)
T PLN03210 625 KLWDGV-HSLTGLRNIDLRGSKNL---------KEIPDLSMATNLETLKLSDCSSLVELPSSIQY-LNKLEDLDMSRCEN 693 (1153)
T ss_pred cccccc-ccCCCCCEEECCCCCCc---------CcCCccccCCcccEEEecCCCCccccchhhhc-cCCCCEEeCCCCCC
Confidence 577766 78999999999987532 34566788899999999998766688887654 457999999986 6
Q ss_pred ccCCCcccccccCCeEecccccccccCCCCCCCCCeEEecCCcCcCCCccccccCCCceEEEcccCcc-------cccCC
Q 001842 550 LESLQEPYFIAGVGLLDLHSNELQGSIPYMSPNTSYMDYSNNNFTTIPADIGNFMSGTIFFSAANNSL-------TGVIP 622 (1007)
Q Consensus 550 l~~l~~~~~~~~L~~L~l~~N~l~~~~~~~~~~L~~L~ls~n~l~~i~~~~~~~~~~L~~L~l~~n~l-------~~~~p 622 (1007)
++.+|....+++|+.|++++|...+.+|....++++|++++|.+..+|..+ .+++|+.|.+.++.. ....+
T Consensus 694 L~~Lp~~i~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~~lP~~~--~l~~L~~L~l~~~~~~~l~~~~~~l~~ 771 (1153)
T PLN03210 694 LEILPTGINLKSLYRLNLSGCSRLKSFPDISTNISWLDLDETAIEEFPSNL--RLENLDELILCEMKSEKLWERVQPLTP 771 (1153)
T ss_pred cCccCCcCCCCCCCEEeCCCCCCccccccccCCcCeeecCCCccccccccc--cccccccccccccchhhccccccccch
Confidence 778887767889999999999887788877889999999999999999765 467888888876432 22222
Q ss_pred ccccCCCCCCEEEccCCcccccCCcchhhcCcCccceEEccCCcCccccCCCcCCCCCccEEeccCCcccccccccccCC
Q 001842 623 QSVCNATYFSVLDLSNNSLSGTIPTCLITNSSRTLGVLNLRGNSLNGTLSDRVPGICGLQILDLNGNQLEGMVPKSLANC 702 (1007)
Q Consensus 623 ~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l 702 (1007)
..+...++|+.|++++|...+.+|..+..+. +|+.|++++|..-+.+|..+ ++++|+.|++++|.....+|.. .
T Consensus 772 ~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~--~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~---~ 845 (1153)
T PLN03210 772 LMTMLSPSLTRLFLSDIPSLVELPSSIQNLH--KLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI---S 845 (1153)
T ss_pred hhhhccccchheeCCCCCCccccChhhhCCC--CCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc---c
Confidence 2334457899999999988888999988776 99999999987666777766 7899999999998766566654 3
Q ss_pred CCCcEEeCCCCcCCccchhhhhcCCCCcEEECCC-ccCccccCCCCCCCCCCCCcEEECCCCc
Q 001842 703 KMLQVLDLGNNNFSKKFPCWLKNASSLQVLVLRS-NNFSGNISCPRNNVSWPLLQIIDLASNK 764 (1007)
Q Consensus 703 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~-N~l~~~~~~~~~~~~l~~L~~L~Ls~N~ 764 (1007)
++|+.|+|++|.++ .+|.++..+++|+.|++++ |++.. + |..+..+++|+.++++++.
T Consensus 846 ~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~-l--~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 846 TNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQR-V--SLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred cccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCc-c--CcccccccCCCeeecCCCc
Confidence 67999999999996 5788999999999999998 55554 4 6778889999999999885
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.83 E-value=1.1e-20 Score=224.23 Aligned_cols=139 Identities=28% Similarity=0.443 Sum_probs=63.0
Q ss_pred CCCeEEecCCcCcCCCccccccCCCceEEEcccCcccccCCccccCCCCCCEEEccCCcccccCCcchhhcCcCccceEE
Q 001842 582 NTSYMDYSNNNFTTIPADIGNFMSGTIFFSAANNSLTGVIPQSVCNATYFSVLDLSNNSLSGTIPTCLITNSSRTLGVLN 661 (1007)
Q Consensus 582 ~L~~L~ls~n~l~~i~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~ 661 (1007)
+++.|++++|+++.+|..+. ++|+.|++++|+++. +|..+. ++|+.|++++|+++ .+|..+. ++|+.|+
T Consensus 242 ~L~~L~Ls~N~L~~LP~~l~---s~L~~L~Ls~N~L~~-LP~~l~--~sL~~L~Ls~N~Lt-~LP~~lp----~sL~~L~ 310 (754)
T PRK15370 242 TIQEMELSINRITELPERLP---SALQSLDLFHNKISC-LPENLP--EELRYLSVYDNSIR-TLPAHLP----SGITHLN 310 (754)
T ss_pred cccEEECcCCccCcCChhHh---CCCCEEECcCCccCc-cccccC--CCCcEEECCCCccc-cCcccch----hhHHHHH
Confidence 45555555555555554432 245555555555552 343332 34555555555555 3443321 1455555
Q ss_pred ccCCcCccccCCCcCCCCCccEEeccCCcccccccccccCCCCCcEEeCCCCcCCccchhhhhcCCCCcEEECCCccCc
Q 001842 662 LRGNSLNGTLSDRVPGICGLQILDLNGNQLEGMVPKSLANCKMLQVLDLGNNNFSKKFPCWLKNASSLQVLVLRSNNFS 740 (1007)
Q Consensus 662 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~ 740 (1007)
+++|+++. +|..+. ++|+.|++++|.+++ +|..+. ++|+.|++++|+|+ .+|..+ .++|+.|++++|+++
T Consensus 311 Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~-~LP~~l--p~~L~~LdLs~N~Lt 380 (754)
T PRK15370 311 VQSNSLTA-LPETLP--PGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQIT-VLPETL--PPTITTLDVSRNALT 380 (754)
T ss_pred hcCCcccc-CCcccc--ccceeccccCCcccc-CChhhc--CcccEEECCCCCCC-cCChhh--cCCcCEEECCCCcCC
Confidence 55555553 222221 345555555555543 333321 34555555555543 233322 134444444444443
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.82 E-value=2.3e-20 Score=221.56 Aligned_cols=97 Identities=24% Similarity=0.400 Sum_probs=39.9
Q ss_pred CCCeEEecCCcCcCCCccccccCCCceEEEcccCcccccCCccccCCCCCCEEEccCCcccccCCcchhhcCcCccceEE
Q 001842 582 NTSYMDYSNNNFTTIPADIGNFMSGTIFFSAANNSLTGVIPQSVCNATYFSVLDLSNNSLSGTIPTCLITNSSRTLGVLN 661 (1007)
Q Consensus 582 ~L~~L~ls~n~l~~i~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~ 661 (1007)
+++.|++++|+++.+|..++ ++|++|++++|++++ +|..+. .+|+.|++++|++. .+|..+.. +|+.|+
T Consensus 200 ~L~~L~Ls~N~LtsLP~~l~---~nL~~L~Ls~N~Lts-LP~~l~--~~L~~L~Ls~N~L~-~LP~~l~s----~L~~L~ 268 (754)
T PRK15370 200 QITTLILDNNELKSLPENLQ---GNIKTLYANSNQLTS-IPATLP--DTIQEMELSINRIT-ELPERLPS----ALQSLD 268 (754)
T ss_pred CCcEEEecCCCCCcCChhhc---cCCCEEECCCCcccc-CChhhh--ccccEEECcCCccC-cCChhHhC----CCCEEE
Confidence 34444444444444444332 234444444444432 222221 23444455555444 34433321 444444
Q ss_pred ccCCcCccccCCCcCCCCCccEEeccCCccc
Q 001842 662 LRGNSLNGTLSDRVPGICGLQILDLNGNQLE 692 (1007)
Q Consensus 662 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 692 (1007)
+++|+++. +|..+. ++|+.|++++|+++
T Consensus 269 Ls~N~L~~-LP~~l~--~sL~~L~Ls~N~Lt 296 (754)
T PRK15370 269 LFHNKISC-LPENLP--EELRYLSVYDNSIR 296 (754)
T ss_pred CcCCccCc-cccccC--CCCcEEECCCCccc
Confidence 44444442 233222 24444444444444
No 19
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.70 E-value=2.2e-18 Score=191.51 Aligned_cols=38 Identities=32% Similarity=0.375 Sum_probs=16.9
Q ss_pred CCCCEEeCCCCccc----ccCCcCccCCCCCCEEeCCCcccc
Q 001842 849 KSLYALNLSQNVLT----GSIPSSFGNLEQIESLDLSMNNLS 886 (1007)
Q Consensus 849 ~~L~~L~Ls~N~l~----g~ip~~~~~l~~L~~LdLs~N~l~ 886 (1007)
+.|+.|++++|.++ +.++..+..+++|+.+|+++|.++
T Consensus 250 ~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~ 291 (319)
T cd00116 250 ISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFG 291 (319)
T ss_pred CCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCc
Confidence 34444555554444 122233334444555555555554
No 20
>PLN03150 hypothetical protein; Provisional
Probab=99.68 E-value=8.9e-17 Score=191.10 Aligned_cols=118 Identities=32% Similarity=0.604 Sum_probs=106.2
Q ss_pred ceEEEEcccccccCCCcccccCCCCCCEEeCCCCcccccCCcCccCCCCCCEEeCCCccccccCCccCcCCCCCCeEEcc
Q 001842 826 IFTSIDFSSNNFEGPIPEEMGRFKSLYALNLSQNVLTGSIPSSFGNLEQIESLDLSMNNLSGKIPAPLANLNFLSVLNLS 905 (1007)
Q Consensus 826 ~l~~ldLs~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~l~ls 905 (1007)
.++.|+|++|.++|.+|..++.+++|+.|+|++|+++|.+|..++.+++|+.|||++|+++|.+|..++++++|+.|+|+
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 36789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccccCCCCCC--CCccCCCcccCCCCCCCCCCCCCCC
Q 001842 906 YNNLVGKIPTSTQ--LQSFSPTSYEGNKGLYGPPLTNDSQ 943 (1007)
Q Consensus 906 ~N~L~g~iP~~~~--~~~~~~~~~~gn~~lcg~~~~~~c~ 943 (1007)
+|+++|.+|.... +.......+.||+++||.|....|.
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~l~~C~ 538 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRACG 538 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCccccCCCCCCCCc
Confidence 9999999997532 2223455689999999987656674
No 21
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.68 E-value=4.2e-18 Score=189.18 Aligned_cols=242 Identities=26% Similarity=0.282 Sum_probs=152.1
Q ss_pred ccCCCCCCEEEccCCccccc----CCcchhhcCcCccceEEccCCcCcc------ccCCCcCCCCCccEEeccCCccccc
Q 001842 625 VCNATYFSVLDLSNNSLSGT----IPTCLITNSSRTLGVLNLRGNSLNG------TLSDRVPGICGLQILDLNGNQLEGM 694 (1007)
Q Consensus 625 ~~~~~~L~~L~Ls~N~l~~~----~p~~~~~~~~~~L~~L~Ls~N~l~~------~~~~~~~~l~~L~~L~L~~N~l~~~ 694 (1007)
+..+..|+.|+++++.++.. ++..+.... ++++++++++.+.+ .++..+..+++|+.|++++|.+.+.
T Consensus 19 ~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~--~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 96 (319)
T cd00116 19 LPKLLCLQVLRLEGNTLGEEAAKALASALRPQP--SLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPD 96 (319)
T ss_pred HHHHhhccEEeecCCCCcHHHHHHHHHHHhhCC--CceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChh
Confidence 33444455555555555321 222222222 45666666655541 2233455566777777777777665
Q ss_pred ccccccCCCC---CcEEeCCCCcCCc----cchhhhhcC-CCCcEEECCCccCcccc--CCCCCCCCCCCCcEEECCCCc
Q 001842 695 VPKSLANCKM---LQVLDLGNNNFSK----KFPCWLKNA-SSLQVLVLRSNNFSGNI--SCPRNNVSWPLLQIIDLASNK 764 (1007)
Q Consensus 695 ~p~~l~~l~~---L~~L~Ls~N~l~~----~~p~~l~~l-~~L~~L~L~~N~l~~~~--~~~~~~~~l~~L~~L~Ls~N~ 764 (1007)
.+..+..+.. |+.|++++|++++ .+...+..+ ++|+.|++++|.+++.. ..+..+..+++|+.|++++|.
T Consensus 97 ~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~ 176 (319)
T cd00116 97 GCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNG 176 (319)
T ss_pred HHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCC
Confidence 5555555544 7888888877763 223344555 77788888888777321 113345566778888888888
Q ss_pred CcccCchHHHHhHHHhhhhccccccccccccccccCcceeeeeEEEEEecceeeeeeccccceEEEEcccccccCC----
Q 001842 765 FSGRLSKKWLLTLEKMMNAETKSGSELKHLQYGFMGGYQFYQVTVTVTVKSVEILVRKVSNIFTSIDFSSNNFEGP---- 840 (1007)
Q Consensus 765 l~g~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ldLs~N~l~g~---- 840 (1007)
+++.........+. ..+.|+.|++++|.+++.
T Consensus 177 l~~~~~~~l~~~l~--------------------------------------------~~~~L~~L~L~~n~i~~~~~~~ 212 (319)
T cd00116 177 IGDAGIRALAEGLK--------------------------------------------ANCNLEVLDLNNNGLTDEGASA 212 (319)
T ss_pred CchHHHHHHHHHHH--------------------------------------------hCCCCCEEeccCCccChHHHHH
Confidence 77532111110000 124678888888888744
Q ss_pred CcccccCCCCCCEEeCCCCcccccCCcCcc-----CCCCCCEEeCCCcccc----ccCCccCcCCCCCCeEEccCCcccc
Q 001842 841 IPEEMGRFKSLYALNLSQNVLTGSIPSSFG-----NLEQIESLDLSMNNLS----GKIPAPLANLNFLSVLNLSYNNLVG 911 (1007)
Q Consensus 841 ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~-----~l~~L~~LdLs~N~l~----g~ip~~l~~l~~L~~l~ls~N~L~g 911 (1007)
++..+..+++|+.|++++|.+++..+..+. ..+.|++|++++|.++ ..++..+..++.|+++|+++|+++.
T Consensus 213 l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~ 292 (319)
T cd00116 213 LAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGE 292 (319)
T ss_pred HHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcH
Confidence 344567788999999999999874333333 2479999999999997 3455667777899999999999974
Q ss_pred c
Q 001842 912 K 912 (1007)
Q Consensus 912 ~ 912 (1007)
.
T Consensus 293 ~ 293 (319)
T cd00116 293 E 293 (319)
T ss_pred H
Confidence 3
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.61 E-value=1.5e-17 Score=151.91 Aligned_cols=180 Identities=29% Similarity=0.530 Sum_probs=126.0
Q ss_pred CCCccEEeccCCcccccccccccCCCCCcEEeCCCCcCCccchhhhhcCCCCcEEECCCccCccccCCCCCCCCCCCCcE
Q 001842 678 ICGLQILDLNGNQLEGMVPKSLANCKMLQVLDLGNNNFSKKFPCWLKNASSLQVLVLRSNNFSGNISCPRNNVSWPLLQI 757 (1007)
Q Consensus 678 l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~ 757 (1007)
+...+.|.|++|+++ .+|..++.+.+|++|++++|+++ ..|..++.++.|++|+++-|++.-. |..++.+|.|++
T Consensus 32 ~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~~l---prgfgs~p~lev 106 (264)
T KOG0617|consen 32 MSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLNIL---PRGFGSFPALEV 106 (264)
T ss_pred hhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhhcC---ccccCCCchhhh
Confidence 344555666666666 44555666666666666666664 4455566666666666666666533 667777777777
Q ss_pred EECCCCcCccc-CchHHHHhHHHhhhhccccccccccccccccCcceeeeeEEEEEecceeeeeeccccceEEEEccccc
Q 001842 758 IDLASNKFSGR-LSKKWLLTLEKMMNAETKSGSELKHLQYGFMGGYQFYQVTVTVTVKSVEILVRKVSNIFTSIDFSSNN 836 (1007)
Q Consensus 758 L~Ls~N~l~g~-~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ldLs~N~ 836 (1007)
|||++|+++.. +|..+| .++.+..|.|+.|.
T Consensus 107 ldltynnl~e~~lpgnff------------------------------------------------~m~tlralyl~dnd 138 (264)
T KOG0617|consen 107 LDLTYNNLNENSLPGNFF------------------------------------------------YMTTLRALYLGDND 138 (264)
T ss_pred hhccccccccccCCcchh------------------------------------------------HHHHHHHHHhcCCC
Confidence 77777776532 332222 13345567788888
Q ss_pred ccCCCcccccCCCCCCEEeCCCCcccccCCcCccCCCCCCEEeCCCccccccCCccCcCCCC---CCeEEccCCcccccC
Q 001842 837 FEGPIPEEMGRFKSLYALNLSQNVLTGSIPSSFGNLEQIESLDLSMNNLSGKIPAPLANLNF---LSVLNLSYNNLVGKI 913 (1007)
Q Consensus 837 l~g~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~---L~~l~ls~N~L~g~i 913 (1007)
|. .+|..++++++|+.|.+..|.+- ..|..+|.|++|+.|.+.+|+++ .+|+.++++.- =+++.+.+|....+|
T Consensus 139 fe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~-vlppel~~l~l~~~k~v~r~E~NPwv~pI 215 (264)
T KOG0617|consen 139 FE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLT-VLPPELANLDLVGNKQVMRMEENPWVNPI 215 (264)
T ss_pred cc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceee-ecChhhhhhhhhhhHHHHhhhhCCCCChH
Confidence 88 78888999999999999999988 78999999999999999999998 77888887643 345566677765444
No 23
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.60 E-value=1.9e-17 Score=151.25 Aligned_cols=185 Identities=28% Similarity=0.457 Sum_probs=135.1
Q ss_pred cCCCCCCEEEccCCcccccCCcchhhcCcCccceEEccCCcCccccCCCcCCCCCccEEeccCCcccccccccccCCCCC
Q 001842 626 CNATYFSVLDLSNNSLSGTIPTCLITNSSRTLGVLNLRGNSLNGTLSDRVPGICGLQILDLNGNQLEGMVPKSLANCKML 705 (1007)
Q Consensus 626 ~~~~~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L 705 (1007)
.+++..+.|.+|+|+++ .+|+.+.... +|+.|++++|+++ ..|..++.++.|+.|+++-|++. ..|..|+.++.|
T Consensus 30 f~~s~ITrLtLSHNKl~-~vppnia~l~--nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~l 104 (264)
T KOG0617|consen 30 FNMSNITRLTLSHNKLT-VVPPNIAELK--NLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPAL 104 (264)
T ss_pred cchhhhhhhhcccCcee-ecCCcHHHhh--hhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchh
Confidence 34566677777888877 6677777665 7788888888776 45667777788888888888877 777888888888
Q ss_pred cEEeCCCCcCCc-cchhhhhcCCCCcEEECCCccCccccCCCCCCCCCCCCcEEECCCCcCcccCchHHHHhHHHhhhhc
Q 001842 706 QVLDLGNNNFSK-KFPCWLKNASSLQVLVLRSNNFSGNISCPRNNVSWPLLQIIDLASNKFSGRLSKKWLLTLEKMMNAE 784 (1007)
Q Consensus 706 ~~L~Ls~N~l~~-~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~~l~~~~~~~ 784 (1007)
++|||.+|++.. ..|..|..+..|+.|+|+.|.|.-. |..++++++|++|.+.+|.+-
T Consensus 105 evldltynnl~e~~lpgnff~m~tlralyl~dndfe~l---p~dvg~lt~lqil~lrdndll------------------ 163 (264)
T KOG0617|consen 105 EVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEIL---PPDVGKLTNLQILSLRDNDLL------------------ 163 (264)
T ss_pred hhhhccccccccccCCcchhHHHHHHHHHhcCCCcccC---ChhhhhhcceeEEeeccCchh------------------
Confidence 888888887753 4676777777777778888877633 667777777777777766652
Q ss_pred cccccccccccccccCcceeeeeEEEEEecceeeeeeccccceEEEEcccccccCCCcccccCCCCCCEEeCCCCccccc
Q 001842 785 TKSGSELKHLQYGFMGGYQFYQVTVTVTVKSVEILVRKVSNIFTSIDFSSNNFEGPIPEEMGRFKSLYALNLSQNVLTGS 864 (1007)
Q Consensus 785 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ldLs~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~ 864 (1007)
..|.+++.++.|++|.+.+|+++ .
T Consensus 164 -------------------------------------------------------~lpkeig~lt~lrelhiqgnrl~-v 187 (264)
T KOG0617|consen 164 -------------------------------------------------------SLPKEIGDLTRLRELHIQGNRLT-V 187 (264)
T ss_pred -------------------------------------------------------hCcHHHHHHHHHHHHhcccceee-e
Confidence 67888999999999999999999 6
Q ss_pred CCcCccCCCC---CCEEeCCCccccccCCcc
Q 001842 865 IPSSFGNLEQ---IESLDLSMNNLSGKIPAP 892 (1007)
Q Consensus 865 ip~~~~~l~~---L~~LdLs~N~l~g~ip~~ 892 (1007)
+|..++++.- =+.+.+.+|..-..|.+.
T Consensus 188 lppel~~l~l~~~k~v~r~E~NPwv~pIaeQ 218 (264)
T KOG0617|consen 188 LPPELANLDLVGNKQVMRMEENPWVNPIAEQ 218 (264)
T ss_pred cChhhhhhhhhhhHHHHhhhhCCCCChHHHH
Confidence 7777777643 234556666665555444
No 24
>PLN03150 hypothetical protein; Provisional
Probab=99.41 E-value=1.2e-12 Score=156.02 Aligned_cols=126 Identities=29% Similarity=0.467 Sum_probs=102.0
Q ss_pred CCCCHHHHHHHHHhhhcCCCCCCCcCCCCCCCCCCCCCCCCc----cccceecCCC-----CCEEEEeCCCCCccccccC
Q 001842 29 GQCQSDQQSLLLQMKNSFILSKDSITSTKLSQWSSHHSSDCC----DWNGVDCDEA-----GHVIGLDLSREPIIGGLEN 99 (1007)
Q Consensus 29 ~~~~~~~~~~ll~~k~~~~~~~~~~~~~~l~~W~~~~~~~~c----~w~gv~c~~~-----~~v~~L~L~~~~l~g~~~~ 99 (1007)
..+.++|.+||+++|+.+.. +. ..+| . ++.|| .|.||.|+.. .+|+.|+|+++.+.|.+
T Consensus 367 ~~t~~~~~~aL~~~k~~~~~-~~------~~~W--~-g~~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~n~L~g~i-- 434 (623)
T PLN03150 367 SKTLLEEVSALQTLKSSLGL-PL------RFGW--N-GDPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDNQGLRGFI-- 434 (623)
T ss_pred cccCchHHHHHHHHHHhcCC-cc------cCCC--C-CCCCCCcccccccceeeccCCCCceEEEEEECCCCCccccC--
Confidence 34567899999999999853 32 2479 3 34453 7999999531 25999999999999888
Q ss_pred CCccccCCCCCeeeCCCCCCCCCCCCccccCCCCCCEEeCCCCCCCccCCccccCCCCCCEEeCCCCC
Q 001842 100 ATGLFSLQYLRSLNLGFTLFSGIQIPSRLANLTNLTYLNLSQSGFIQDIPIEISSLTRLVTLDLSAEP 167 (1007)
Q Consensus 100 ~~~l~~l~~L~~L~Ls~n~~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~lp~~l~~l~~L~~L~Ls~n~ 167 (1007)
+..++++++|++|+|++|.+.+. +|..++.+++|++|+|++|.+.+.+|..++++++|++|++++|.
T Consensus 435 p~~i~~L~~L~~L~Ls~N~l~g~-iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~ 501 (623)
T PLN03150 435 PNDISKLRHLQSINLSGNSIRGN-IPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNS 501 (623)
T ss_pred CHHHhCCCCCCEEECCCCcccCc-CChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCc
Confidence 77888999999999999998886 88888999999999999998888888888888888888888764
No 25
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.19 E-value=9.5e-13 Score=142.72 Aligned_cols=173 Identities=27% Similarity=0.382 Sum_probs=148.6
Q ss_pred CCeEEecCCcCcCCCccccccCCCceEEEcccCcccccCCccccCCCCCCEEEccCCcccccCCcchhhcCcCccceEEc
Q 001842 583 TSYMDYSNNNFTTIPADIGNFMSGTIFFSAANNSLTGVIPQSVCNATYFSVLDLSNNSLSGTIPTCLITNSSRTLGVLNL 662 (1007)
Q Consensus 583 L~~L~ls~n~l~~i~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~L 662 (1007)
....|++.|++.++|..+.. +..|+.+.++.|.+. .+|..++++..|+++|++.|+++ .+|..++.+ -|+.|.+
T Consensus 77 t~~aDlsrNR~~elp~~~~~-f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~l---pLkvli~ 150 (722)
T KOG0532|consen 77 TVFADLSRNRFSELPEEACA-FVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDL---PLKVLIV 150 (722)
T ss_pred hhhhhccccccccCchHHHH-HHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcC---cceeEEE
Confidence 34678889999999887654 667888889999887 68889999999999999999998 889888887 4999999
Q ss_pred cCCcCccccCCCcCCCCCccEEeccCCcccccccccccCCCCCcEEeCCCCcCCccchhhhhcCCCCcEEECCCccCccc
Q 001842 663 RGNSLNGTLSDRVPGICGLQILDLNGNQLEGMVPKSLANCKMLQVLDLGNNNFSKKFPCWLKNASSLQVLVLRSNNFSGN 742 (1007)
Q Consensus 663 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ 742 (1007)
++|+++ .+|+.++.+..|..||.+.|.+. .+|..+.++.+|+.|.++.|++... |..+..+ .|..||++.|++...
T Consensus 151 sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~~l-p~El~~L-pLi~lDfScNkis~i 226 (722)
T KOG0532|consen 151 SNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLEDL-PEELCSL-PLIRLDFSCNKISYL 226 (722)
T ss_pred ecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhhhC-CHHHhCC-ceeeeecccCceeec
Confidence 999998 67888888899999999999999 6788899999999999999999754 5556644 588999999999854
Q ss_pred cCCCCCCCCCCCCcEEECCCCcCccc
Q 001842 743 ISCPRNNVSWPLLQIIDLASNKFSGR 768 (1007)
Q Consensus 743 ~~~~~~~~~l~~L~~L~Ls~N~l~g~ 768 (1007)
|-.+..++.|++|.|.+|++...
T Consensus 227 ---Pv~fr~m~~Lq~l~LenNPLqSP 249 (722)
T KOG0532|consen 227 ---PVDFRKMRHLQVLQLENNPLQSP 249 (722)
T ss_pred ---chhhhhhhhheeeeeccCCCCCC
Confidence 88999999999999999999744
No 26
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.17 E-value=1.1e-12 Score=142.39 Aligned_cols=193 Identities=26% Similarity=0.384 Sum_probs=117.7
Q ss_pred CCCCEEEccCCcccccCCcchhhcCcCccceEEccCCcCccccCCCcCCCCCccEEeccCCcccccccccccCCCCCcEE
Q 001842 629 TYFSVLDLSNNSLSGTIPTCLITNSSRTLGVLNLRGNSLNGTLSDRVPGICGLQILDLNGNQLEGMVPKSLANCKMLQVL 708 (1007)
Q Consensus 629 ~~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L 708 (1007)
.--...|++.|++. .+|..++.+. .|+.+.|..|.+. .+|.++.++..|++|||+.|+++ ..|..+..|+ |+.|
T Consensus 75 tdt~~aDlsrNR~~-elp~~~~~f~--~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvl 148 (722)
T KOG0532|consen 75 TDTVFADLSRNRFS-ELPEEACAFV--SLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVL 148 (722)
T ss_pred cchhhhhccccccc-cCchHHHHHH--HHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeE
Confidence 33445666677766 6666665554 5666666666665 45666666666666666666666 4455555443 5666
Q ss_pred eCCCCcCCccchhhhhcCCCCcEEECCCccCccccCCCCCCCCCCCCcEEECCCCcCcccCchHHHHhHHHhhhhccccc
Q 001842 709 DLGNNNFSKKFPCWLKNASSLQVLVLRSNNFSGNISCPRNNVSWPLLQIIDLASNKFSGRLSKKWLLTLEKMMNAETKSG 788 (1007)
Q Consensus 709 ~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~~l~~~~~~~~~~~ 788 (1007)
-+++|+++ .+|..++....|..|+.+.|.+... |..++++.+|+
T Consensus 149 i~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~sl---psql~~l~slr-------------------------------- 192 (722)
T KOG0532|consen 149 IVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQSL---PSQLGYLTSLR-------------------------------- 192 (722)
T ss_pred EEecCccc-cCCcccccchhHHHhhhhhhhhhhc---hHHhhhHHHHH--------------------------------
Confidence 66666663 4444555555555555555555422 33333333333
Q ss_pred cccccccccccCcceeeeeEEEEEecceeeeeeccccceEEEEcccccccCCCcccccCCCCCCEEeCCCCcccccCCcC
Q 001842 789 SELKHLQYGFMGGYQFYQVTVTVTVKSVEILVRKVSNIFTSIDFSSNNFEGPIPEEMGRFKSLYALNLSQNVLTGSIPSS 868 (1007)
Q Consensus 789 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ldLs~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~ 868 (1007)
.+.+..|++. ..|+++..| .|..||+|+|+++ .||-.
T Consensus 193 ----------------------------------------~l~vrRn~l~-~lp~El~~L-pLi~lDfScNkis-~iPv~ 229 (722)
T KOG0532|consen 193 ----------------------------------------DLNVRRNHLE-DLPEELCSL-PLIRLDFSCNKIS-YLPVD 229 (722)
T ss_pred ----------------------------------------HHHHhhhhhh-hCCHHHhCC-ceeeeecccCcee-ecchh
Confidence 3444555555 456667644 5788899999988 78888
Q ss_pred ccCCCCCCEEeCCCccccccCCccC---cCCCCCCeEEccCC
Q 001842 869 FGNLEQIESLDLSMNNLSGKIPAPL---ANLNFLSVLNLSYN 907 (1007)
Q Consensus 869 ~~~l~~L~~LdLs~N~l~g~ip~~l---~~l~~L~~l~ls~N 907 (1007)
|.+|+.|++|-|.+|.|+ ..|..+ +...--++|+..--
T Consensus 230 fr~m~~Lq~l~LenNPLq-SPPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 230 FRKMRHLQVLQLENNPLQ-SPPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred hhhhhhheeeeeccCCCC-CChHHHHhccceeeeeeecchhc
Confidence 999999999999999888 445443 34444556655443
No 27
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.12 E-value=7.9e-11 Score=134.63 Aligned_cols=103 Identities=32% Similarity=0.399 Sum_probs=56.4
Q ss_pred ccceEEccCCcCccccCCCcCCCC-CccEEeccCCcccccccccccCCCCCcEEeCCCCcCCccchhhhhcCCCCcEEEC
Q 001842 656 TLGVLNLRGNSLNGTLSDRVPGIC-GLQILDLNGNQLEGMVPKSLANCKMLQVLDLGNNNFSKKFPCWLKNASSLQVLVL 734 (1007)
Q Consensus 656 ~L~~L~Ls~N~l~~~~~~~~~~l~-~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L 734 (1007)
.++.|++.+|.++.+ +....... +|+.|++++|++. .+|..+..++.|+.|++++|+++.. |...+..++|+.|++
T Consensus 117 ~l~~L~l~~n~i~~i-~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~~l-~~~~~~~~~L~~L~l 193 (394)
T COG4886 117 NLTSLDLDNNNITDI-PPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLSDL-PKLLSNLSNLNNLDL 193 (394)
T ss_pred ceeEEecCCcccccC-ccccccchhhcccccccccchh-hhhhhhhccccccccccCCchhhhh-hhhhhhhhhhhheec
Confidence 456666666666533 22333332 6666666666666 3444566666677777777776533 333335666666666
Q ss_pred CCccCccccCCCCCCCCCCCCcEEECCCCc
Q 001842 735 RSNNFSGNISCPRNNVSWPLLQIIDLASNK 764 (1007)
Q Consensus 735 ~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~ 764 (1007)
++|+++.. |........|+.+++++|+
T Consensus 194 s~N~i~~l---~~~~~~~~~L~~l~~~~N~ 220 (394)
T COG4886 194 SGNKISDL---PPEIELLSALEELDLSNNS 220 (394)
T ss_pred cCCccccC---chhhhhhhhhhhhhhcCCc
Confidence 66666543 3322333335555555553
No 28
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.09 E-value=1.8e-11 Score=125.90 Aligned_cols=141 Identities=28% Similarity=0.361 Sum_probs=66.5
Q ss_pred CCCCCCEEeCCCCCCCCCccccccchHHhhccCCCCceeecCCccccCccchh----------hHhhCCCCCCcEEEccC
Q 001842 154 SLTRLVTLDLSAEPSGGFSFLEISNLSLFLQNLTELRELHLDNVDLFASGTDW----------CKALSFLPNLQVLSLSR 223 (1007)
Q Consensus 154 ~l~~L~~L~Ls~n~~~~l~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~----------~~~l~~l~~L~~L~L~~ 223 (1007)
.+++|++||||.|-++ ...+..+-..+..++.|++|+|.+|.+...+... ......-+.|+++..++
T Consensus 90 ~~~~L~~ldLSDNA~G---~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~r 166 (382)
T KOG1909|consen 90 GCPKLQKLDLSDNAFG---PKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGR 166 (382)
T ss_pred cCCceeEeeccccccC---ccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeec
Confidence 3344555555544321 1223333444555566666666655553322111 11233445666666666
Q ss_pred cCCCCcc----hhhhcCCCCCCEEECCCCCCCCC----CchhhhcCCCCCCEEeccCCcCCcc----cchhccCCCCCCE
Q 001842 224 CELSGPI----NQYLANLRSLSAIRLPNNYGLSS----PVPEFLANFSHLTALDLGDCQLQGK----FPEKILQVPTLET 291 (1007)
Q Consensus 224 n~l~~~~----~~~l~~l~~L~~L~L~~n~~~~~----~~~~~l~~l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~ 291 (1007)
|++.... ...+...+.|+.+.++.| .+.. .+...+..+++|+.|||.+|-++.. +...+..+++|++
T Consensus 167 Nrlen~ga~~~A~~~~~~~~leevr~~qN-~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~E 245 (382)
T KOG1909|consen 167 NRLENGGATALAEAFQSHPTLEEVRLSQN-GIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRE 245 (382)
T ss_pred cccccccHHHHHHHHHhccccceEEEecc-cccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchhee
Confidence 6554322 233444555555555555 3221 1223455566666666666655432 2233444555666
Q ss_pred EeCCCCC
Q 001842 292 LDLSDNP 298 (1007)
Q Consensus 292 L~Ls~n~ 298 (1007)
|++++|.
T Consensus 246 l~l~dcl 252 (382)
T KOG1909|consen 246 LNLGDCL 252 (382)
T ss_pred ecccccc
Confidence 6655553
No 29
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.07 E-value=2.2e-11 Score=125.31 Aligned_cols=246 Identities=24% Similarity=0.281 Sum_probs=174.5
Q ss_pred CCEEEEeCCCCCcccccc--CCCccccCCCCCeeeCCCCCCCC---CCCCc-------cccCCCCCCEEeCCCCCCCccC
Q 001842 81 GHVIGLDLSREPIIGGLE--NATGLFSLQYLRSLNLGFTLFSG---IQIPS-------RLANLTNLTYLNLSQSGFIQDI 148 (1007)
Q Consensus 81 ~~v~~L~L~~~~l~g~~~--~~~~l~~l~~L~~L~Ls~n~~~~---~~lp~-------~l~~l~~L~~L~Ls~n~~~~~l 148 (1007)
..++.|+|+++.+.-+.- ....+.+.+.||..++|.- ++| .++|+ .+-.+++|++||||+|.+...-
T Consensus 30 ~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~-ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g 108 (382)
T KOG1909|consen 30 DSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDM-FTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKG 108 (382)
T ss_pred CceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhh-hcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccc
Confidence 569999999998863210 0456778889999999864 222 12453 3456789999999999976554
Q ss_pred Cc----cccCCCCCCEEeCCCCCCCCCccccccc------hHHhhccCCCCceeecCCccccCccc-hhhHhhCCCCCCc
Q 001842 149 PI----EISSLTRLVTLDLSAEPSGGFSFLEISN------LSLFLQNLTELRELHLDNVDLFASGT-DWCKALSFLPNLQ 217 (1007)
Q Consensus 149 p~----~l~~l~~L~~L~Ls~n~~~~l~~~~~~~------~~~~l~~l~~L~~L~L~~~~~~~~~~-~~~~~l~~l~~L~ 217 (1007)
+. -+..++.|++|.|.+|.++......+.. ....+..-++||.+...+|++.+.+. .+..++...+.|+
T Consensus 109 ~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~le 188 (382)
T KOG1909|consen 109 IRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTLE 188 (382)
T ss_pred hHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhccccc
Confidence 43 4577999999999999755442222221 33456777899999999999877654 4667788899999
Q ss_pred EEEccCcCCCCc----chhhhcCCCCCCEEECCCCCCCCCC----chhhhcCCCCCCEEeccCCcCCcccchhcc-----
Q 001842 218 VLSLSRCELSGP----INQYLANLRSLSAIRLPNNYGLSSP----VPEFLANFSHLTALDLGDCQLQGKFPEKIL----- 284 (1007)
Q Consensus 218 ~L~L~~n~l~~~----~~~~l~~l~~L~~L~L~~n~~~~~~----~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~----- 284 (1007)
++.++.|.+... ....+..+++|++|+|..| -++.. +...+..+++|++|++++|.+...-..++.
T Consensus 189 evr~~qN~I~~eG~~al~eal~~~~~LevLdl~DN-tft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~ 267 (382)
T KOG1909|consen 189 EVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDN-TFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKE 267 (382)
T ss_pred eEEEecccccCchhHHHHHHHHhCCcceeeecccc-hhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhc
Confidence 999999987643 3467889999999999999 56543 345567789999999999998765544442
Q ss_pred CCCCCCEEeCCCCCCCCCCCCCCCCCCCCcEEEecCCCCcccccccccCCCCCCEEEccCCcCC
Q 001842 285 QVPTLETLDLSDNPSLQGSLPHFPKNSSLRNLILFGTGFSGTLPNSIGNLENLANVDISSCNFT 348 (1007)
Q Consensus 285 ~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~ 348 (1007)
..|+|++|.+.+|.+..... ..+...+...+.|+.|+|++|.+.
T Consensus 268 ~~p~L~vl~l~gNeIt~da~--------------------~~la~~~~ek~dL~kLnLngN~l~ 311 (382)
T KOG1909|consen 268 SAPSLEVLELAGNEITRDAA--------------------LALAACMAEKPDLEKLNLNGNRLG 311 (382)
T ss_pred cCCCCceeccCcchhHHHHH--------------------HHHHHHHhcchhhHHhcCCccccc
Confidence 25677777777665432211 122234455677888888888773
No 30
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.04 E-value=2.3e-10 Score=130.88 Aligned_cols=200 Identities=32% Similarity=0.421 Sum_probs=133.2
Q ss_pred EEcccCcccccCCccccCCCCCCEEEccCCcccccCCcchhhcCcCccceEEccCCcCccccCCCcCCCCCccEEeccCC
Q 001842 610 FSAANNSLTGVIPQSVCNATYFSVLDLSNNSLSGTIPTCLITNSSRTLGVLNLRGNSLNGTLSDRVPGICGLQILDLNGN 689 (1007)
Q Consensus 610 L~l~~n~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N 689 (1007)
+..+.|.+...+. .+...+.++.|++.+|.++ .+|....... ++|+.|++++|++.. +|..+..+++|+.|++++|
T Consensus 98 l~~~~~~~~~~~~-~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~-~nL~~L~l~~N~i~~-l~~~~~~l~~L~~L~l~~N 173 (394)
T COG4886 98 LDLNLNRLRSNIS-ELLELTNLTSLDLDNNNIT-DIPPLIGLLK-SNLKELDLSDNKIES-LPSPLRNLPNLKNLDLSFN 173 (394)
T ss_pred eeccccccccCch-hhhcccceeEEecCCcccc-cCccccccch-hhcccccccccchhh-hhhhhhccccccccccCCc
Confidence 4455555432221 2334467888888888887 5555544330 168888999888874 4466788899999999999
Q ss_pred cccccccccccCCCCCcEEeCCCCcCCccchhhhhcCCCCcEEECCCccCccccCCCCCCCCCCCCcEEECCCCcCcccC
Q 001842 690 QLEGMVPKSLANCKMLQVLDLGNNNFSKKFPCWLKNASSLQVLVLRSNNFSGNISCPRNNVSWPLLQIIDLASNKFSGRL 769 (1007)
Q Consensus 690 ~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~~ 769 (1007)
+++ .+|...+..+.|+.|++++|+++ .+|........|++|.+++|++... +..+..+.++..+.+++|++.
T Consensus 174 ~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~~~---~~~~~~~~~l~~l~l~~n~~~--- 245 (394)
T COG4886 174 DLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSIIEL---LSSLSNLKNLSGLELSNNKLE--- 245 (394)
T ss_pred hhh-hhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcceec---chhhhhcccccccccCCceee---
Confidence 999 45555557889999999999996 4555555667799999999963322 444555555555555555542
Q ss_pred chHHHHhHHHhhhhccccccccccccccccCcceeeeeEEEEEecceeeeeeccccceEEEEcccccccCCCcccccCCC
Q 001842 770 SKKWLLTLEKMMNAETKSGSELKHLQYGFMGGYQFYQVTVTVTVKSVEILVRKVSNIFTSIDFSSNNFEGPIPEEMGRFK 849 (1007)
Q Consensus 770 p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ldLs~N~l~g~ip~~~~~l~ 849 (1007)
.+|..++.+.
T Consensus 246 ----------------------------------------------------------------------~~~~~~~~l~ 255 (394)
T COG4886 246 ----------------------------------------------------------------------DLPESIGNLS 255 (394)
T ss_pred ----------------------------------------------------------------------eccchhcccc
Confidence 1244556666
Q ss_pred CCCEEeCCCCcccccCCcCccCCCCCCEEeCCCccccccCCccC
Q 001842 850 SLYALNLSQNVLTGSIPSSFGNLEQIESLDLSMNNLSGKIPAPL 893 (1007)
Q Consensus 850 ~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l 893 (1007)
.++.|++++|+++ .++. ++.+.+++.||+++|.++...|...
T Consensus 256 ~l~~L~~s~n~i~-~i~~-~~~~~~l~~L~~s~n~~~~~~~~~~ 297 (394)
T COG4886 256 NLETLDLSNNQIS-SISS-LGSLTNLRELDLSGNSLSNALPLIA 297 (394)
T ss_pred ccceecccccccc-cccc-ccccCccCEEeccCccccccchhhh
Confidence 7777777777777 3444 7777777777777777776655543
No 31
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.91 E-value=4.7e-10 Score=118.67 Aligned_cols=188 Identities=25% Similarity=0.236 Sum_probs=99.2
Q ss_pred hccCCCCceeecCCccccCccchhhHhhCCCCCCcEEEccCcCCCCcchhhh-cCCCCCCEEECCCCCCCCCCchh-hhc
Q 001842 183 LQNLTELRELHLDNVDLFASGTDWCKALSFLPNLQVLSLSRCELSGPINQYL-ANLRSLSAIRLPNNYGLSSPVPE-FLA 260 (1007)
Q Consensus 183 l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l-~~l~~L~~L~L~~n~~~~~~~~~-~l~ 260 (1007)
...|++++.|||++|-+... ...++-...+|+|+.|+++.|++.....+.. ..+++|+.|.++.| .++...-. ...
T Consensus 142 ~k~~~~v~~LdLS~NL~~nw-~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~C-Gls~k~V~~~~~ 219 (505)
T KOG3207|consen 142 SKILPNVRDLDLSRNLFHNW-FPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSC-GLSWKDVQWILL 219 (505)
T ss_pred hhhCCcceeecchhhhHHhH-HHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccC-CCCHHHHHHHHH
Confidence 44445555555554433322 2223334455555555555555443222111 24556666666666 44432222 233
Q ss_pred CCCCCCEEeccCCcCCcccchhccCCCCCCEEeCCCCCCCCCCC-CCCCCCCCCcEEEecCCCCccc-cccc-----ccC
Q 001842 261 NFSHLTALDLGDCQLQGKFPEKILQVPTLETLDLSDNPSLQGSL-PHFPKNSSLRNLILFGTGFSGT-LPNS-----IGN 333 (1007)
Q Consensus 261 ~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~-~~~~~l~~L~~L~L~~n~l~~~-~~~~-----l~~ 333 (1007)
.+++|+.|+|..|...........-+..|++|||++|++..... +....++.|+.|+++.+.+... .|+. ...
T Consensus 220 ~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~ 299 (505)
T KOG3207|consen 220 TFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHT 299 (505)
T ss_pred hCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcc
Confidence 46666666666664332333334445566666666665544332 2344566666666666666542 2222 345
Q ss_pred CCCCCEEEccCCcCCCCCc--ccccCCCCCcEEEeccCcccC
Q 001842 334 LENLANVDISSCNFTGPIP--TSMANLTRLFHLDFSSNHFSG 373 (1007)
Q Consensus 334 l~~L~~L~Ls~n~l~~~~p--~~l~~l~~L~~L~L~~n~l~~ 373 (1007)
+++|++|++..|++.. .+ ..+..+++|+.|.+..|.++.
T Consensus 300 f~kL~~L~i~~N~I~~-w~sl~~l~~l~nlk~l~~~~n~ln~ 340 (505)
T KOG3207|consen 300 FPKLEYLNISENNIRD-WRSLNHLRTLENLKHLRITLNYLNK 340 (505)
T ss_pred cccceeeecccCcccc-ccccchhhccchhhhhhcccccccc
Confidence 6788888888888752 22 234556677777777777653
No 32
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.90 E-value=3.3e-10 Score=119.80 Aligned_cols=212 Identities=28% Similarity=0.350 Sum_probs=113.6
Q ss_pred hhccCCCCceeecCCccccCccchhhHhhCCCCCCcEEEccCcCCCCc--chhhhcCCCCCCEEECCCCCCCCCCchh-h
Q 001842 182 FLQNLTELRELHLDNVDLFASGTDWCKALSFLPNLQVLSLSRCELSGP--INQYLANLRSLSAIRLPNNYGLSSPVPE-F 258 (1007)
Q Consensus 182 ~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~--~~~~l~~l~~L~~L~L~~n~~~~~~~~~-~ 258 (1007)
.-.++.+|++..|+++.+...+.. .....|++++.|||+.|-+... +......+++|+.|+++.| .+...... .
T Consensus 116 kQsn~kkL~~IsLdn~~V~~~~~~--~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~N-rl~~~~~s~~ 192 (505)
T KOG3207|consen 116 KQSNLKKLREISLDNYRVEDAGIE--EYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSN-RLSNFISSNT 192 (505)
T ss_pred HhhhHHhhhheeecCccccccchh--hhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccc-cccCCccccc
Confidence 345677788888888777655433 4556788888888888766543 2244566777777777777 44322111 1
Q ss_pred hcCCCCCCEEeccCCcCCcccc-hhccCCCCCCEEeCCCCCCCCCCCCCCCCCCCCcEEEecCCCCcccccccccCCCCC
Q 001842 259 LANFSHLTALDLGDCQLQGKFP-EKILQVPTLETLDLSDNPSLQGSLPHFPKNSSLRNLILFGTGFSGTLPNSIGNLENL 337 (1007)
Q Consensus 259 l~~l~~L~~L~Ls~n~l~~~~p-~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L 337 (1007)
-..+++|+.|.|+.|.++...- ..+..+|+|+.|+|..|.... .-.....-+..|
T Consensus 193 ~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~------------------------~~~~~~~i~~~L 248 (505)
T KOG3207|consen 193 TLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIIL------------------------IKATSTKILQTL 248 (505)
T ss_pred hhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccc------------------------eecchhhhhhHH
Confidence 1245667777777777653222 223446666666666663211 111222333445
Q ss_pred CEEEccCCcCCCCCc--ccccCCCCCcEEEeccCcccCC-CCCc------cCCCCCCEEEcccCCCCCccCCcccccCCC
Q 001842 338 ANVDISSCNFTGPIP--TSMANLTRLFHLDFSSNHFSGP-IPSL------GLSRNLSYLDLSSNDLTGRILFTPWEQLLN 408 (1007)
Q Consensus 338 ~~L~Ls~n~l~~~~p--~~l~~l~~L~~L~L~~n~l~~~-~~~~------~~~~~L~~L~L~~n~l~~~i~~~~~~~l~~ 408 (1007)
++|||++|++.. .+ ...+.++.|+.|+++.+.+... .|.. ...++|++|++..|++..--....+..+++
T Consensus 249 ~~LdLs~N~li~-~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~n 327 (505)
T KOG3207|consen 249 QELDLSNNNLID-FDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLEN 327 (505)
T ss_pred hhccccCCcccc-cccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccch
Confidence 555555555441 22 2334555555555555554431 1111 122667777777776642111112344566
Q ss_pred cCEEEccCCcCCC
Q 001842 409 IKYVHLNYNSLSG 421 (1007)
Q Consensus 409 L~~L~L~~n~l~~ 421 (1007)
|+.|.+..|.++.
T Consensus 328 lk~l~~~~n~ln~ 340 (505)
T KOG3207|consen 328 LKHLRITLNYLNK 340 (505)
T ss_pred hhhhhcccccccc
Confidence 6666666666653
No 33
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.89 E-value=1.3e-09 Score=106.03 Aligned_cols=126 Identities=25% Similarity=0.287 Sum_probs=39.2
Q ss_pred CEEEEeCCCCCccccccCCCccc-cCCCCCeeeCCCCCCCCCCCCccccCCCCCCEEeCCCCCCCccCCccc-cCCCCCC
Q 001842 82 HVIGLDLSREPIIGGLENATGLF-SLQYLRSLNLGFTLFSGIQIPSRLANLTNLTYLNLSQSGFIQDIPIEI-SSLTRLV 159 (1007)
Q Consensus 82 ~v~~L~L~~~~l~g~~~~~~~l~-~l~~L~~L~Ls~n~~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~lp~~l-~~l~~L~ 159 (1007)
+.+.|+|.++.|.. + ..++ .+.+|+.|||++|.++.. +.+..+++|+.|++++|.+. .+++.+ ..+++|+
T Consensus 20 ~~~~L~L~~n~I~~-I---e~L~~~l~~L~~L~Ls~N~I~~l---~~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L~ 91 (175)
T PF14580_consen 20 KLRELNLRGNQIST-I---ENLGATLDKLEVLDLSNNQITKL---EGLPGLPRLKTLDLSNNRIS-SISEGLDKNLPNLQ 91 (175)
T ss_dssp --------------------S--TT-TT--EEE-TTS--S-----TT----TT--EEE--SS----S-CHHHHHH-TT--
T ss_pred cccccccccccccc-c---cchhhhhcCCCEEECCCCCCccc---cCccChhhhhhcccCCCCCC-ccccchHHhCCcCC
Confidence 45666666666652 2 2344 456666666666666643 34556666666666666643 333333 2466666
Q ss_pred EEeCCCCCCCCCccccccchHHhhccCCCCceeecCCccccCccchhhHhhCCCCCCcEEEc
Q 001842 160 TLDLSAEPSGGFSFLEISNLSLFLQNLTELRELHLDNVDLFASGTDWCKALSFLPNLQVLSL 221 (1007)
Q Consensus 160 ~L~Ls~n~~~~l~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~l~~L~~L~L 221 (1007)
+|++++|++..+. .+ ..+..+++|++|++.+|.++.........+..+|+|+.||-
T Consensus 92 ~L~L~~N~I~~l~-----~l-~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 92 ELYLSNNKISDLN-----EL-EPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp EEE-TTS---SCC-----CC-GGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred EEECcCCcCCChH-----Hh-HHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCC
Confidence 6666666543331 11 22455666666666666665544444444555556655553
No 34
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.84 E-value=6.6e-10 Score=111.38 Aligned_cols=143 Identities=24% Similarity=0.234 Sum_probs=114.1
Q ss_pred ccCCccccCCCCCCEEEccCCcccccCCcchhhcCcCccceEEccCCcCccccCCCcCCCCCccEEeccCCccccccccc
Q 001842 619 GVIPQSVCNATYFSVLDLSNNSLSGTIPTCLITNSSRTLGVLNLRGNSLNGTLSDRVPGICGLQILDLNGNQLEGMVPKS 698 (1007)
Q Consensus 619 ~~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~ 698 (1007)
|..-..+...+.|+.+|||+|.|+ .+.+++.-.+ .++.|++|+|.+.... .+..+++|+.|||++|.++ .+..+
T Consensus 274 G~~~~~~dTWq~LtelDLS~N~I~-~iDESvKL~P--kir~L~lS~N~i~~v~--nLa~L~~L~~LDLS~N~Ls-~~~Gw 347 (490)
T KOG1259|consen 274 GSALVSADTWQELTELDLSGNLIT-QIDESVKLAP--KLRRLILSQNRIRTVQ--NLAELPQLQLLDLSGNLLA-ECVGW 347 (490)
T ss_pred CceEEecchHhhhhhccccccchh-hhhhhhhhcc--ceeEEeccccceeeeh--hhhhcccceEeecccchhH-hhhhh
Confidence 333344445678999999999998 6777665544 8999999999998553 3888999999999999998 44455
Q ss_pred ccCCCCCcEEeCCCCcCCccchhhhhcCCCCcEEECCCccCccccCCCCCCCCCCCCcEEECCCCcCcccCc
Q 001842 699 LANCKMLQVLDLGNNNFSKKFPCWLKNASSLQVLVLRSNNFSGNISCPRNNVSWPLLQIIDLASNKFSGRLS 770 (1007)
Q Consensus 699 l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~~p 770 (1007)
=..+-+.++|.|+.|.+... ..++++-+|..||+++|+|...- ....++++|-|+++.|.+|++.+...
T Consensus 348 h~KLGNIKtL~La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ld-eV~~IG~LPCLE~l~L~~NPl~~~vd 416 (490)
T KOG1259|consen 348 HLKLGNIKTLKLAQNKIETL--SGLRKLYSLVNLDLSSNQIEELD-EVNHIGNLPCLETLRLTGNPLAGSVD 416 (490)
T ss_pred HhhhcCEeeeehhhhhHhhh--hhhHhhhhheeccccccchhhHH-HhcccccccHHHHHhhcCCCccccch
Confidence 55678899999999999643 45778889999999999997542 24678999999999999999987643
No 35
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.84 E-value=3.6e-09 Score=103.02 Aligned_cols=107 Identities=32% Similarity=0.393 Sum_probs=36.8
Q ss_pred ccceEEccCCcCccccCCCcC-CCCCccEEeccCCcccccccccccCCCCCcEEeCCCCcCCccchhhhhcCCCCcEEEC
Q 001842 656 TLGVLNLRGNSLNGTLSDRVP-GICGLQILDLNGNQLEGMVPKSLANCKMLQVLDLGNNNFSKKFPCWLKNASSLQVLVL 734 (1007)
Q Consensus 656 ~L~~L~Ls~N~l~~~~~~~~~-~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L 734 (1007)
.+++|+|++|.|+.+ +.++ .+.+|+.|+|++|.|+.. +.+..++.|++|++++|+|+...+.....+++|++|++
T Consensus 20 ~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L 95 (175)
T PF14580_consen 20 KLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYL 95 (175)
T ss_dssp ------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S-CHHHHHH-TT--EEE-
T ss_pred ccccccccccccccc--cchhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCccccchHHhCCcCCEEEC
Confidence 566677777776643 2333 456777777777777744 24666778888888888887554332235778888888
Q ss_pred CCccCccccCCCCCCCCCCCCcEEECCCCcCcc
Q 001842 735 RSNNFSGNISCPRNNVSWPLLQIIDLASNKFSG 767 (1007)
Q Consensus 735 ~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~g 767 (1007)
++|+|...-. -..+..+++|++|+|.+|+++.
T Consensus 96 ~~N~I~~l~~-l~~L~~l~~L~~L~L~~NPv~~ 127 (175)
T PF14580_consen 96 SNNKISDLNE-LEPLSSLPKLRVLSLEGNPVCE 127 (175)
T ss_dssp TTS---SCCC-CGGGGG-TT--EEE-TT-GGGG
T ss_pred cCCcCCChHH-hHHHHcCCCcceeeccCCcccc
Confidence 8888765321 3455677888888888888753
No 36
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.83 E-value=2.5e-09 Score=130.05 Aligned_cols=110 Identities=30% Similarity=0.458 Sum_probs=62.5
Q ss_pred cccCCCCCeeeCCCCCCCCCCCCccccCCCCCCEEeCCCCCCCccCCccccCCCCCCEEeCCCCCCCCCccccccchHHh
Q 001842 103 LFSLQYLRSLNLGFTLFSGIQIPSRLANLTNLTYLNLSQSGFIQDIPIEISSLTRLVTLDLSAEPSGGFSFLEISNLSLF 182 (1007)
Q Consensus 103 l~~l~~L~~L~Ls~n~~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~lp~~l~~l~~L~~L~Ls~n~~~~l~~~~~~~~~~~ 182 (1007)
|..+++||+|||++|.-.+ ++|+.|+.|-+||||+++++.+ ..+|..+++|..|.+|++..+. .....+..
T Consensus 567 f~~m~~LrVLDLs~~~~l~-~LP~~I~~Li~LryL~L~~t~I-~~LP~~l~~Lk~L~~Lnl~~~~-------~l~~~~~i 637 (889)
T KOG4658|consen 567 FRSLPLLRVLDLSGNSSLS-KLPSSIGELVHLRYLDLSDTGI-SHLPSGLGNLKKLIYLNLEVTG-------RLESIPGI 637 (889)
T ss_pred HhhCcceEEEECCCCCccC-cCChHHhhhhhhhcccccCCCc-cccchHHHHHHhhheecccccc-------ccccccch
Confidence 4457777777777654333 3777777777777777777663 3677777777777777776543 12222444
Q ss_pred hccCCCCceeecCCccccCccchhhHhhCCCCCCcEEEcc
Q 001842 183 LQNLTELRELHLDNVDLFASGTDWCKALSFLPNLQVLSLS 222 (1007)
Q Consensus 183 l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~l~~L~~L~L~ 222 (1007)
...|++||+|.+..... ..+......+..+.+|+.+...
T Consensus 638 ~~~L~~Lr~L~l~~s~~-~~~~~~l~el~~Le~L~~ls~~ 676 (889)
T KOG4658|consen 638 LLELQSLRVLRLPRSAL-SNDKLLLKELENLEHLENLSIT 676 (889)
T ss_pred hhhcccccEEEeecccc-ccchhhHHhhhcccchhhheee
Confidence 55567777776655431 1122223344555555555543
No 37
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.80 E-value=6.6e-10 Score=127.03 Aligned_cols=245 Identities=22% Similarity=0.213 Sum_probs=129.6
Q ss_pred CCCceEEEcccCcccccCCccccCCCCCCEEEccCCcccccCCcchhhcCcCccceEEccCCcCccccCCCcCCCCCccE
Q 001842 604 MSGTIFFSAANNSLTGVIPQSVCNATYFSVLDLSNNSLSGTIPTCLITNSSRTLGVLNLRGNSLNGTLSDRVPGICGLQI 683 (1007)
Q Consensus 604 ~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 683 (1007)
+..++.+++..|.+.. +-..++.+++|+.|++.+|++.... ..+..+. +|++|++++|.|+.+. .+..++.|+.
T Consensus 71 l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~i~-~~l~~~~--~L~~L~ls~N~I~~i~--~l~~l~~L~~ 144 (414)
T KOG0531|consen 71 LTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEKIE-NLLSSLV--NLQVLDLSFNKITKLE--GLSTLTLLKE 144 (414)
T ss_pred hHhHHhhccchhhhhh-hhcccccccceeeeeccccchhhcc-cchhhhh--cchheecccccccccc--chhhccchhh
Confidence 3444555555555543 1223455566666666666665322 2122222 6666666666665442 2344455666
Q ss_pred EeccCCcccccccccccCCCCCcEEeCCCCcCCccch-hhhhcCCCCcEEECCCccCccccCCCCCCCCCCCCcEEECCC
Q 001842 684 LDLNGNQLEGMVPKSLANCKMLQVLDLGNNNFSKKFP-CWLKNASSLQVLVLRSNNFSGNISCPRNNVSWPLLQIIDLAS 762 (1007)
Q Consensus 684 L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p-~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~ 762 (1007)
|++++|.|+.. ..+..++.|+.+++++|+++...+ . ...+.+++.+.+.+|.+.. ...+..+..+..+++..
T Consensus 145 L~l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~----i~~~~~~~~l~~~~l~~ 217 (414)
T KOG0531|consen 145 LNLSGNLISDI--SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIRE----IEGLDLLKKLVLLSLLD 217 (414)
T ss_pred heeccCcchhc--cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhc----ccchHHHHHHHHhhccc
Confidence 66666666633 234446666666666666654444 2 3455666666666666543 22233333333444444
Q ss_pred CcCcccCchHHHHhHHHhhhhccccccccccccccccCcceeeeeEEEEEecceeeeeecccc--ceEEEEcccccccCC
Q 001842 763 NKFSGRLSKKWLLTLEKMMNAETKSGSELKHLQYGFMGGYQFYQVTVTVTVKSVEILVRKVSN--IFTSIDFSSNNFEGP 840 (1007)
Q Consensus 763 N~l~g~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~l~~ldLs~N~l~g~ 840 (1007)
|.++-.-+.. ... .++.+++++|.+. .
T Consensus 218 n~i~~~~~l~--------------------------------------------------~~~~~~L~~l~l~~n~i~-~ 246 (414)
T KOG0531|consen 218 NKISKLEGLN--------------------------------------------------ELVMLHLRELYLSGNRIS-R 246 (414)
T ss_pred ccceeccCcc--------------------------------------------------cchhHHHHHHhcccCccc-c
Confidence 4443110000 001 2455666777666 3
Q ss_pred CcccccCCCCCCEEeCCCCcccccCCcCccCCCCCCEEeCCCcccccc---CCcc-CcCCCCCCeEEccCCcccccCC
Q 001842 841 IPEEMGRFKSLYALNLSQNVLTGSIPSSFGNLEQIESLDLSMNNLSGK---IPAP-LANLNFLSVLNLSYNNLVGKIP 914 (1007)
Q Consensus 841 ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~---ip~~-l~~l~~L~~l~ls~N~L~g~iP 914 (1007)
+|..+..+..+..|++++|+++.. ..+.....+..+.++.|.+... .... .+....++...+.+|......+
T Consensus 247 ~~~~~~~~~~l~~l~~~~n~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (414)
T KOG0531|consen 247 SPEGLENLKNLPVLDLSSNRISNL--EGLERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNPIRKISS 322 (414)
T ss_pred ccccccccccccccchhhcccccc--ccccccchHHHhccCcchhcchhhhhccccccccccccccccccCccccccc
Confidence 334456667777777777777643 2244455666666777766521 1111 4556667777777777665554
No 38
>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.
Probab=98.80 E-value=4.8e-09 Score=76.37 Aligned_cols=40 Identities=40% Similarity=0.769 Sum_probs=30.1
Q ss_pred HHHHHHHHHhhhcCCCCCCCcCCCCCCCCCCCCC--CCCccccceecC
Q 001842 33 SDQQSLLLQMKNSFILSKDSITSTKLSQWSSHHS--SDCCDWNGVDCD 78 (1007)
Q Consensus 33 ~~~~~~ll~~k~~~~~~~~~~~~~~l~~W~~~~~--~~~c~w~gv~c~ 78 (1007)
++|++||++||+++..++. +.+.+|. .. .+||+|.||+|+
T Consensus 2 ~~d~~aLl~~k~~l~~~~~----~~l~~W~--~~~~~~~C~W~GV~Cd 43 (43)
T PF08263_consen 2 NQDRQALLAFKKSLNNDPS----GVLSSWN--PSSDSDPCSWSGVTCD 43 (43)
T ss_dssp HHHHHHHHHHHHCTT-SC-----CCCTT----TT--S-CCCSTTEEE-
T ss_pred cHHHHHHHHHHHhcccccC----cccccCC--CcCCCCCeeeccEEeC
Confidence 6899999999999986554 6899994 43 799999999996
No 39
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.76 E-value=6.4e-09 Score=83.07 Aligned_cols=60 Identities=50% Similarity=0.638 Sum_probs=41.2
Q ss_pred CCCEEeCCCCcccccCCcCccCCCCCCEEeCCCccccccCCccCcCCCCCCeEEccCCcc
Q 001842 850 SLYALNLSQNVLTGSIPSSFGNLEQIESLDLSMNNLSGKIPAPLANLNFLSVLNLSYNNL 909 (1007)
Q Consensus 850 ~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~l~ls~N~L 909 (1007)
+|++|++++|+++...+..|.++++|++||+++|+++...|..|.++++|++|++++|+|
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 566677777777755556667777777777777777766666677777777777777654
No 40
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.74 E-value=9.9e-09 Score=81.96 Aligned_cols=60 Identities=35% Similarity=0.529 Sum_probs=39.9
Q ss_pred ccceEEccCCcCccccCCCcCCCCCccEEeccCCcccccccccccCCCCCcEEeCCCCcC
Q 001842 656 TLGVLNLRGNSLNGTLSDRVPGICGLQILDLNGNQLEGMVPKSLANCKMLQVLDLGNNNF 715 (1007)
Q Consensus 656 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l 715 (1007)
+|++|++++|+++.+.+..|.++++|++|++++|+++...|.+|.++++|+.|++++|+|
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 566666666666666666666666666666666666666666666666666666666654
No 41
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.74 E-value=7.7e-09 Score=125.92 Aligned_cols=128 Identities=30% Similarity=0.255 Sum_probs=88.1
Q ss_pred CCEEEEeCCCCCccccccCCCccccCCCCCeeeCCCCC--CCCCCCCccccCCCCCCEEeCCCCCCCccCCccccCCCCC
Q 001842 81 GHVIGLDLSREPIIGGLENATGLFSLQYLRSLNLGFTL--FSGIQIPSRLANLTNLTYLNLSQSGFIQDIPIEISSLTRL 158 (1007)
Q Consensus 81 ~~v~~L~L~~~~l~g~~~~~~~l~~l~~L~~L~Ls~n~--~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~lp~~l~~l~~L 158 (1007)
..|+...+.++.+.-.. .=...+.|++|=+.+|. +... -++.|..+++|++|||++|.-.+.+|.+|++|.+|
T Consensus 523 ~~~rr~s~~~~~~~~~~----~~~~~~~L~tLll~~n~~~l~~i-s~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~L 597 (889)
T KOG4658|consen 523 NSVRRMSLMNNKIEHIA----GSSENPKLRTLLLQRNSDWLLEI-SGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHL 597 (889)
T ss_pred hheeEEEEeccchhhcc----CCCCCCccceEEEeecchhhhhc-CHHHHhhCcceEEEECCCCCccCcCChHHhhhhhh
Confidence 35666666665543111 11123368888888775 4432 23458889999999999998788999999999999
Q ss_pred CEEeCCCCCCCCCccccccchHHhhccCCCCceeecCCccccCccchhhHhhCCCCCCcEEEccCc
Q 001842 159 VTLDLSAEPSGGFSFLEISNLSLFLQNLTELRELHLDNVDLFASGTDWCKALSFLPNLQVLSLSRC 224 (1007)
Q Consensus 159 ~~L~Ls~n~~~~l~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n 224 (1007)
|+|++++. .+.++|..++++..|.+|++..+...... +.....+++|++|.+...
T Consensus 598 ryL~L~~t--------~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~---~~i~~~L~~Lr~L~l~~s 652 (889)
T KOG4658|consen 598 RYLDLSDT--------GISHLPSGLGNLKKLIYLNLEVTGRLESI---PGILLELQSLRVLRLPRS 652 (889)
T ss_pred hcccccCC--------CccccchHHHHHHhhheeccccccccccc---cchhhhcccccEEEeecc
Confidence 99999975 46788888999999999988876432221 223344666666666544
No 42
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.74 E-value=2.2e-09 Score=107.71 Aligned_cols=108 Identities=31% Similarity=0.274 Sum_probs=63.2
Q ss_pred ccCCCCCCEEEccCCcCCCCCcccccCCCCCcEEEeccCcccCCCCCccCCCCCCEEEcccCCCCCccCCcccccCCCcC
Q 001842 331 IGNLENLANVDISSCNFTGPIPTSMANLTRLFHLDFSSNHFSGPIPSLGLSRNLSYLDLSSNDLTGRILFTPWEQLLNIK 410 (1007)
Q Consensus 331 l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~i~~~~~~~l~~L~ 410 (1007)
+.....|+++|+|+|.++ .+.++..-.|.++.|++++|.+. .+......++|+.||+++|.++ .+..+ -..+-+++
T Consensus 280 ~dTWq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~-~v~nLa~L~~L~~LDLS~N~Ls-~~~Gw-h~KLGNIK 355 (490)
T KOG1259|consen 280 ADTWQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIR-TVQNLAELPQLQLLDLSGNLLA-ECVGW-HLKLGNIK 355 (490)
T ss_pred cchHhhhhhccccccchh-hhhhhhhhccceeEEecccccee-eehhhhhcccceEeecccchhH-hhhhh-HhhhcCEe
Confidence 334456667777777666 45555666667777777777665 2333444466666777666665 33332 33455666
Q ss_pred EEEccCCcCCCccCccccCCCcccccccCCCccc
Q 001842 411 YVHLNYNSLSGSIPRSLFLLPTLEMLLLSTNQFE 444 (1007)
Q Consensus 411 ~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 444 (1007)
.|.++.|.+.. -..+..+-+|..||+++|++.
T Consensus 356 tL~La~N~iE~--LSGL~KLYSLvnLDl~~N~Ie 387 (490)
T KOG1259|consen 356 TLKLAQNKIET--LSGLRKLYSLVNLDLSSNQIE 387 (490)
T ss_pred eeehhhhhHhh--hhhhHhhhhheeccccccchh
Confidence 66666666542 234555556666666666655
No 43
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.57 E-value=1e-08 Score=117.34 Aligned_cols=249 Identities=26% Similarity=0.287 Sum_probs=148.8
Q ss_pred ccCCCCcEEECCCCccccccccCCCCCCCCCCCCCCCccEEEcCCCccccchhhhHhhccccceEEeccCCcccCCCccc
Q 001842 478 FELRNLLTLDLSSNKFSRLKLASSKPRGTPNLNKQSKLSSLDLSDNQISGEIPNWIWEFSANLVFLNLSHNLLESLQEPY 557 (1007)
Q Consensus 478 ~~l~~L~~L~L~~n~l~~l~~~~~~~~~~p~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~~~~L~~L~Ls~N~l~~l~~~~ 557 (1007)
..+..++.+.+..|.+.++ ...+..+++|..|++.+|+|. .+... ...+.+|++|++++|.|+.+....
T Consensus 69 ~~l~~l~~l~l~~n~i~~~---------~~~l~~~~~l~~l~l~~n~i~-~i~~~-l~~~~~L~~L~ls~N~I~~i~~l~ 137 (414)
T KOG0531|consen 69 ESLTSLKELNLRQNLIAKI---------LNHLSKLKSLEALDLYDNKIE-KIENL-LSSLVNLQVLDLSFNKITKLEGLS 137 (414)
T ss_pred HHhHhHHhhccchhhhhhh---------hcccccccceeeeeccccchh-hcccc-hhhhhcchheeccccccccccchh
Confidence 3567777777888887742 111566778888888888887 44331 234457888888888888877666
Q ss_pred ccccCCeEecccccccccCCCCCCCCCeEEecCCcCcCCCccccccCCCceEEEcccCcccccCC-ccccCCCCCCEEEc
Q 001842 558 FIAGVGLLDLHSNELQGSIPYMSPNTSYMDYSNNNFTTIPADIGNFMSGTIFFSAANNSLTGVIP-QSVCNATYFSVLDL 636 (1007)
Q Consensus 558 ~~~~L~~L~l~~N~l~~~~~~~~~~L~~L~ls~n~l~~i~~~~~~~~~~L~~L~l~~n~l~~~~p-~~~~~~~~L~~L~L 636 (1007)
.+..|+.|++++|.++. ++.. ..+..|+.+++++|.+...-+ . ...+.+++.+++
T Consensus 138 ~l~~L~~L~l~~N~i~~---------------------~~~~--~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l 193 (414)
T KOG0531|consen 138 TLTLLKELNLSGNLISD---------------------ISGL--ESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDL 193 (414)
T ss_pred hccchhhheeccCcchh---------------------ccCC--ccchhhhcccCCcchhhhhhhhh-hhhccchHHHhc
Confidence 55556666665555543 3321 114455555555555554433 2 345666777777
Q ss_pred cCCcccccCCcchhhcCcCccceEEccCCcCccccCCCcCCCC--CccEEeccCCcccccccccccCCCCCcEEeCCCCc
Q 001842 637 SNNSLSGTIPTCLITNSSRTLGVLNLRGNSLNGTLSDRVPGIC--GLQILDLNGNQLEGMVPKSLANCKMLQVLDLGNNN 714 (1007)
Q Consensus 637 s~N~l~~~~p~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~--~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~ 714 (1007)
++|.+... ..+.... .+..+++..|.++..-+- ..+. .|+.+++++|.+.. .+..+..+..+..||+.+|+
T Consensus 194 ~~n~i~~i--~~~~~~~--~l~~~~l~~n~i~~~~~l--~~~~~~~L~~l~l~~n~i~~-~~~~~~~~~~l~~l~~~~n~ 266 (414)
T KOG0531|consen 194 GGNSIREI--EGLDLLK--KLVLLSLLDNKISKLEGL--NELVMLHLRELYLSGNRISR-SPEGLENLKNLPVLDLSSNR 266 (414)
T ss_pred cCCchhcc--cchHHHH--HHHHhhcccccceeccCc--ccchhHHHHHHhcccCcccc-ccccccccccccccchhhcc
Confidence 77776522 1122222 455556777776643321 1222 27777777777773 33556667778888888888
Q ss_pred CCccchhhhhcCCCCcEEECCCccCccccCCCCC--CCCCCCCcEEECCCCcCcccCc
Q 001842 715 FSKKFPCWLKNASSLQVLVLRSNNFSGNISCPRN--NVSWPLLQIIDLASNKFSGRLS 770 (1007)
Q Consensus 715 l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~--~~~l~~L~~L~Ls~N~l~g~~p 770 (1007)
+...-. +.....+..+....|++......... ....+.++.+.+..|+.....+
T Consensus 267 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (414)
T KOG0531|consen 267 ISNLEG--LERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNPIRKISS 322 (414)
T ss_pred cccccc--ccccchHHHhccCcchhcchhhhhccccccccccccccccccCccccccc
Confidence 764422 34455666677777776533211222 5667778888888888776554
No 44
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.56 E-value=4.7e-09 Score=105.54 Aligned_cols=181 Identities=23% Similarity=0.259 Sum_probs=140.5
Q ss_pred CCCeeeCCCCCCCCCCCCccccCCCCCCEEeCCCCCCCccCCccccCCCCCCEEeCCCCCCCCCccccccchHHhhccCC
Q 001842 108 YLRSLNLGFTLFSGIQIPSRLANLTNLTYLNLSQSGFIQDIPIEISSLTRLVTLDLSAEPSGGFSFLEISNLSLFLQNLT 187 (1007)
Q Consensus 108 ~L~~L~Ls~n~~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~lp~~l~~l~~L~~L~Ls~n~~~~l~~~~~~~~~~~l~~l~ 187 (1007)
.|++||||...++...+-.-+..+.+|+.|.|.++.+...+-..|.+-.+|+.|+++.+. ..........+.+|+
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~s-----G~t~n~~~ll~~scs 260 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCS-----GFTENALQLLLSSCS 260 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeecccccc-----ccchhHHHHHHHhhh
Confidence 599999999988765455567889999999999999999888899999999999999875 223334455689999
Q ss_pred CCceeecCCccccCccchhhHhhCC-CCCCcEEEccCcCCC---CcchhhhcCCCCCCEEECCCCCCCCCCchhhhcCCC
Q 001842 188 ELRELHLDNVDLFASGTDWCKALSF-LPNLQVLSLSRCELS---GPINQYLANLRSLSAIRLPNNYGLSSPVPEFLANFS 263 (1007)
Q Consensus 188 ~L~~L~L~~~~~~~~~~~~~~~l~~-l~~L~~L~L~~n~l~---~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~l~~l~ 263 (1007)
.|.+|++++|..+... ...++.. -++|+.|+++++.-. ..+..-...+++|.+|||+.|..+.......|.+++
T Consensus 261 ~L~~LNlsWc~l~~~~--Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~ 338 (419)
T KOG2120|consen 261 RLDELNLSWCFLFTEK--VTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFN 338 (419)
T ss_pred hHhhcCchHhhccchh--hhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcc
Confidence 9999999999876432 2222222 358899999887321 123334478999999999999667777777888999
Q ss_pred CCCEEeccCCcCCcccchh---ccCCCCCCEEeCCCC
Q 001842 264 HLTALDLGDCQLQGKFPEK---ILQVPTLETLDLSDN 297 (1007)
Q Consensus 264 ~L~~L~Ls~n~l~~~~p~~---l~~l~~L~~L~Ls~n 297 (1007)
.|++|.++.|.. .+|.. +...|.|.+|++.++
T Consensus 339 ~L~~lSlsRCY~--i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 339 YLQHLSLSRCYD--IIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred hheeeehhhhcC--CChHHeeeeccCcceEEEEeccc
Confidence 999999999974 56664 456789999999887
No 45
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.39 E-value=1e-07 Score=94.79 Aligned_cols=217 Identities=22% Similarity=0.217 Sum_probs=129.0
Q ss_pred CCEEEEeCCCCCcccccc--CCCccccCCCCCeeeCCCCCCCC--CCCC-------ccccCCCCCCEEeCCCCCCCccCC
Q 001842 81 GHVIGLDLSREPIIGGLE--NATGLFSLQYLRSLNLGFTLFSG--IQIP-------SRLANLTNLTYLNLSQSGFIQDIP 149 (1007)
Q Consensus 81 ~~v~~L~L~~~~l~g~~~--~~~~l~~l~~L~~L~Ls~n~~~~--~~lp-------~~l~~l~~L~~L~Ls~n~~~~~lp 149 (1007)
..++.+||||+.+..+.. ....+.+-++|++.+++.-.... .++| ..+-+|++|+..+||+|.|....|
T Consensus 30 d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~ 109 (388)
T COG5238 30 DELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFP 109 (388)
T ss_pred cceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccc
Confidence 468899999998864320 03456677888888888643221 1233 345678899999999988877666
Q ss_pred cc----ccCCCCCCEEeCCCCCCCCCcccccc------chHHhhccCCCCceeecCCccccCccch-hhHhhCCCCCCcE
Q 001842 150 IE----ISSLTRLVTLDLSAEPSGGFSFLEIS------NLSLFLQNLTELRELHLDNVDLFASGTD-WCKALSFLPNLQV 218 (1007)
Q Consensus 150 ~~----l~~l~~L~~L~Ls~n~~~~l~~~~~~------~~~~~l~~l~~L~~L~L~~~~~~~~~~~-~~~~l~~l~~L~~ 218 (1007)
+. |++-+.|++|.+++|..+.+....+. ...+....-+.|+......|++...... |...+.....|++
T Consensus 110 e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk~ 189 (388)
T COG5238 110 EELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHENLKE 189 (388)
T ss_pred hHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcCcee
Confidence 43 46677888888888876655333333 2223345556777777777776554332 3344444567777
Q ss_pred EEccCcCCCCc-----chhhhcCCCCCCEEECCCCCCCCCC----chhhhcCCCCCCEEeccCCcCCcccchhcc-----
Q 001842 219 LSLSRCELSGP-----INQYLANLRSLSAIRLPNNYGLSSP----VPEFLANFSHLTALDLGDCQLQGKFPEKIL----- 284 (1007)
Q Consensus 219 L~L~~n~l~~~-----~~~~l~~l~~L~~L~L~~n~~~~~~----~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~----- 284 (1007)
+.+..|.|.-. +...+..+.+|+.|+|..| .++.. +...+...+.|++|.+.+|-++.....++.
T Consensus 190 vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDN-tft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e 268 (388)
T COG5238 190 VKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDN-TFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRRFNE 268 (388)
T ss_pred EEeeecCcCcchhHHHHHHHHHHhCcceeeecccc-chhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHHHhhh
Confidence 77777765432 1123455667777777776 44322 223334455566666666665543333221
Q ss_pred -CCCCCCEEeCCCCC
Q 001842 285 -QVPTLETLDLSDNP 298 (1007)
Q Consensus 285 -~l~~L~~L~Ls~n~ 298 (1007)
..|+|..|...+|.
T Consensus 269 ~~~p~l~~L~~~Yne 283 (388)
T COG5238 269 KFVPNLMPLPGDYNE 283 (388)
T ss_pred hcCCCccccccchhh
Confidence 24555555555553
No 46
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.38 E-value=1.9e-08 Score=101.25 Aligned_cols=160 Identities=24% Similarity=0.256 Sum_probs=81.5
Q ss_pred CCceeecCCccccCccchhhHhhCCCCCCcEEEccCcCCCCcchhhhcCCCCCCEEECCCCCCCCCCc-hhhhcCCCCCC
Q 001842 188 ELRELHLDNVDLFASGTDWCKALSFLPNLQVLSLSRCELSGPINQYLANLRSLSAIRLPNNYGLSSPV-PEFLANFSHLT 266 (1007)
Q Consensus 188 ~L~~L~L~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~-~~~l~~l~~L~ 266 (1007)
.||+|||+...++.. .....++.|.+|+.|.+.++++.+.+...+++-.+|+.|+++.+..++... ---+.+|+.|.
T Consensus 186 Rlq~lDLS~s~it~s--tl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~ 263 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVS--TLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLD 263 (419)
T ss_pred hhHHhhcchhheeHH--HHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHh
Confidence 466666666555422 122334556666666666666666666666666666666666663333321 12345566666
Q ss_pred EEeccCCcCCcccchh-ccC-CCCCCEEeCCCCCCCCCCCCCCCCCCCCcEEEecCCCCcccccccccCCCCCCEEEccC
Q 001842 267 ALDLGDCQLQGKFPEK-ILQ-VPTLETLDLSDNPSLQGSLPHFPKNSSLRNLILFGTGFSGTLPNSIGNLENLANVDISS 344 (1007)
Q Consensus 267 ~L~Ls~n~l~~~~p~~-l~~-l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~ 344 (1007)
+|+|++|.+....... +.+ -++|+.|+|+++.. |-....+..-...+++|.+|||++
T Consensus 264 ~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rr---------------------nl~~sh~~tL~~rcp~l~~LDLSD 322 (419)
T KOG2120|consen 264 ELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRR---------------------NLQKSHLSTLVRRCPNLVHLDLSD 322 (419)
T ss_pred hcCchHhhccchhhhHHHhhhchhhhhhhhhhhHh---------------------hhhhhHHHHHHHhCCceeeecccc
Confidence 6666666554332111 111 13444455544421 001112222334667777777776
Q ss_pred CcC-CCCCcccccCCCCCcEEEeccCc
Q 001842 345 CNF-TGPIPTSMANLTRLFHLDFSSNH 370 (1007)
Q Consensus 345 n~l-~~~~p~~l~~l~~L~~L~L~~n~ 370 (1007)
|.. +......|.+++.|++|.++.|.
T Consensus 323 ~v~l~~~~~~~~~kf~~L~~lSlsRCY 349 (419)
T KOG2120|consen 323 SVMLKNDCFQEFFKFNYLQHLSLSRCY 349 (419)
T ss_pred ccccCchHHHHHHhcchheeeehhhhc
Confidence 542 22223345566666666666664
No 47
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.25 E-value=3.1e-07 Score=92.72 Aligned_cols=67 Identities=28% Similarity=0.340 Sum_probs=42.3
Q ss_pred HhhccCCCCceeecCCccccCccchhhHhhCCCCCCcEEEccCcCCCCcchhhhcCCCCCCEEECCCC
Q 001842 181 LFLQNLTELRELHLDNVDLFASGTDWCKALSFLPNLQVLSLSRCELSGPINQYLANLRSLSAIRLPNN 248 (1007)
Q Consensus 181 ~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n 248 (1007)
..-..++.++++||.+|.+++. .+....+.++|.|++|+++.|.+...|...-....+|++|-|.+.
T Consensus 65 ~~~~~~~~v~elDL~~N~iSdW-seI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT 131 (418)
T KOG2982|consen 65 LFGSSVTDVKELDLTGNLISDW-SEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGT 131 (418)
T ss_pred HHHHHhhhhhhhhcccchhccH-HHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCC
Confidence 3345667777888888877654 334455677888888888888776554332234455555555554
No 48
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.23 E-value=3e-08 Score=88.45 Aligned_cols=89 Identities=22% Similarity=0.333 Sum_probs=53.5
Q ss_pred ceEEEEcccccccCCCcccccCCCCCCEEeCCCCcccccCCcCccCCCCCCEEeCCCccccccCCccCcCCCCCCeEEcc
Q 001842 826 IFTSIDFSSNNFEGPIPEEMGRFKSLYALNLSQNVLTGSIPSSFGNLEQIESLDLSMNNLSGKIPAPLANLNFLSVLNLS 905 (1007)
Q Consensus 826 ~l~~ldLs~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~l~ls 905 (1007)
.++.++|++|+++ .+|+++..++.|+.||++.|.|. ..|..|..|.++..||.-.|.+- +||..+---+.....++.
T Consensus 78 t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~-eid~dl~~s~~~al~~lg 154 (177)
T KOG4579|consen 78 TATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA-EIDVDLFYSSLPALIKLG 154 (177)
T ss_pred hhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCCCCccc-cCcHHHhccccHHHHHhc
Confidence 3455666666666 56666777777777777777766 45666666666777776666665 555443333333444455
Q ss_pred CCcccccCCCCC
Q 001842 906 YNNLVGKIPTST 917 (1007)
Q Consensus 906 ~N~L~g~iP~~~ 917 (1007)
++.+.|.-|.+.
T Consensus 155 nepl~~~~~~kl 166 (177)
T KOG4579|consen 155 NEPLGDETKKKL 166 (177)
T ss_pred CCcccccCcccc
Confidence 556655555443
No 49
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.16 E-value=2.1e-07 Score=104.55 Aligned_cols=128 Identities=27% Similarity=0.250 Sum_probs=79.8
Q ss_pred CCEEEccCCcccccCCcchhhcCcCccceEEccCCcCccccCCCcCCCCCccEEeccCCcccccccccccCCCCCcEEeC
Q 001842 631 FSVLDLSNNSLSGTIPTCLITNSSRTLGVLNLRGNSLNGTLSDRVPGICGLQILDLNGNQLEGMVPKSLANCKMLQVLDL 710 (1007)
Q Consensus 631 L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L 710 (1007)
|...+.++|.+. .+...+.-.+ .|+.|+|++|+++... .+..++.|++|||+.|.++...--....|. |+.|.+
T Consensus 166 L~~a~fsyN~L~-~mD~SLqll~--ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~l 239 (1096)
T KOG1859|consen 166 LATASFSYNRLV-LMDESLQLLP--ALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNL 239 (1096)
T ss_pred HhhhhcchhhHH-hHHHHHHHHH--HhhhhccchhhhhhhH--HHHhcccccccccccchhccccccchhhhh-heeeee
Confidence 555666666665 4455544443 6777777777776543 566677777777777777744333344454 777777
Q ss_pred CCCcCCccchhhhhcCCCCcEEECCCccCccccCCCCCCCCCCCCcEEECCCCcCcc
Q 001842 711 GNNNFSKKFPCWLKNASSLQVLVLRSNNFSGNISCPRNNVSWPLLQIIDLASNKFSG 767 (1007)
Q Consensus 711 s~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~g 767 (1007)
++|.++.. ..+.++.+|+.||+++|-+.+.-. -.-+..+..|+.|.|.+|++-|
T Consensus 240 rnN~l~tL--~gie~LksL~~LDlsyNll~~hse-L~pLwsLs~L~~L~LeGNPl~c 293 (1096)
T KOG1859|consen 240 RNNALTTL--RGIENLKSLYGLDLSYNLLSEHSE-LEPLWSLSSLIVLWLEGNPLCC 293 (1096)
T ss_pred cccHHHhh--hhHHhhhhhhccchhHhhhhcchh-hhHHHHHHHHHHHhhcCCcccc
Confidence 77777543 346667777777777777765421 2234455667777777777743
No 50
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.13 E-value=2.1e-07 Score=98.54 Aligned_cols=278 Identities=19% Similarity=0.183 Sum_probs=113.4
Q ss_pred CCCeeeCCCCCCCCC-CCCccccCCCCCCEEeCCCCCCCcc-CCccc-cCCCCCCEEeCCCCCCCCCccccccchHHhhc
Q 001842 108 YLRSLNLGFTLFSGI-QIPSRLANLTNLTYLNLSQSGFIQD-IPIEI-SSLTRLVTLDLSAEPSGGFSFLEISNLSLFLQ 184 (1007)
Q Consensus 108 ~L~~L~Ls~n~~~~~-~lp~~l~~l~~L~~L~Ls~n~~~~~-lp~~l-~~l~~L~~L~Ls~n~~~~l~~~~~~~~~~~l~ 184 (1007)
.||.|.+.++.-.+. .+-..-..++++++|++.+|...+. .-.++ ..+++|++|++..|. ......+.....
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~-----~iT~~~Lk~la~ 213 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCS-----SITDVSLKYLAE 213 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccc-----hhHHHHHHHHHH
Confidence 455555555432221 1223334556666666665542221 11122 245666666665532 112222223345
Q ss_pred cCCCCceeecCCccc-cCccchhhHhhCCCCCCcEEEccCcCCCCcchhhh----cCCCCCCEEECCCCCCCCCCchhh-
Q 001842 185 NLTELRELHLDNVDL-FASGTDWCKALSFLPNLQVLSLSRCELSGPINQYL----ANLRSLSAIRLPNNYGLSSPVPEF- 258 (1007)
Q Consensus 185 ~l~~L~~L~L~~~~~-~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l----~~l~~L~~L~L~~n~~~~~~~~~~- 258 (1007)
.+++|++|+++++.- ++.+ ...-..+++.++.+.+.+|.=. ..+.+ +.+.-+.++++..+..++...-..
T Consensus 214 gC~kL~~lNlSwc~qi~~~g--v~~~~rG~~~l~~~~~kGC~e~--~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i 289 (483)
T KOG4341|consen 214 GCRKLKYLNLSWCPQISGNG--VQALQRGCKELEKLSLKGCLEL--ELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLI 289 (483)
T ss_pred hhhhHHHhhhccCchhhcCc--chHHhccchhhhhhhhcccccc--cHHHHHHHhccChHhhccchhhhccccchHHHHH
Confidence 566666666665532 2111 1112233444444444443211 01111 222333344444442233221111
Q ss_pred hcCCCCCCEEeccCCcCCcc-cchhc-cCCCCCCEEeCCCCCCCCCC-CCCCC-CCCCCcEEEecCCCCc--cccccccc
Q 001842 259 LANFSHLTALDLGDCQLQGK-FPEKI-LQVPTLETLDLSDNPSLQGS-LPHFP-KNSSLRNLILFGTGFS--GTLPNSIG 332 (1007)
Q Consensus 259 l~~l~~L~~L~Ls~n~l~~~-~p~~l-~~l~~L~~L~Ls~n~~~~~~-~~~~~-~l~~L~~L~L~~n~l~--~~~~~~l~ 332 (1007)
-..+..|+.|+.+++.-.+. .-..+ .+.++|+.|.++.|+..+.. ...+. .++.|+.+++..+... +.+...-.
T Consensus 290 ~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~ 369 (483)
T KOG4341|consen 290 ACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSR 369 (483)
T ss_pred hhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhcc
Confidence 11244555555555432111 11111 23455555555555422111 11111 2455555555555432 11222233
Q ss_pred CCCCCCEEEccCCcCCCCC-----cccccCCCCCcEEEeccCcccCC--CCCccCCCCCCEEEcccCCC
Q 001842 333 NLENLANVDISSCNFTGPI-----PTSMANLTRLFHLDFSSNHFSGP--IPSLGLSRNLSYLDLSSNDL 394 (1007)
Q Consensus 333 ~l~~L~~L~Ls~n~l~~~~-----p~~l~~l~~L~~L~L~~n~l~~~--~~~~~~~~~L~~L~L~~n~l 394 (1007)
+++.|+++.+++|...... ...-..+..|+.+.++++..... ......+++|+.+++-+++-
T Consensus 370 ~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~ 438 (483)
T KOG4341|consen 370 NCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQD 438 (483)
T ss_pred CCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhh
Confidence 5566666666666432111 11123345666666666654321 11222336677766666543
No 51
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.02 E-value=1.1e-07 Score=106.58 Aligned_cols=128 Identities=29% Similarity=0.239 Sum_probs=97.9
Q ss_pred CCceEEEcccCcccccCCccccCCCCCCEEEccCCcccccCCcchhhcCcCccceEEccCCcCccccCCCcCCCCCccEE
Q 001842 605 SGTIFFSAANNSLTGVIPQSVCNATYFSVLDLSNNSLSGTIPTCLITNSSRTLGVLNLRGNSLNGTLSDRVPGICGLQIL 684 (1007)
Q Consensus 605 ~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 684 (1007)
..|.+.+.+.|.+.. ...++.-++.|+.|+|++|+++.. . .+..+. .|++|||++|.++...--...++ .|+.|
T Consensus 164 n~L~~a~fsyN~L~~-mD~SLqll~ale~LnLshNk~~~v-~-~Lr~l~--~LkhLDlsyN~L~~vp~l~~~gc-~L~~L 237 (1096)
T KOG1859|consen 164 NKLATASFSYNRLVL-MDESLQLLPALESLNLSHNKFTKV-D-NLRRLP--KLKHLDLSYNCLRHVPQLSMVGC-KLQLL 237 (1096)
T ss_pred hhHhhhhcchhhHHh-HHHHHHHHHHhhhhccchhhhhhh-H-HHHhcc--cccccccccchhccccccchhhh-hheee
Confidence 456777888888873 345666778899999999999843 2 555555 89999999999985443334444 49999
Q ss_pred eccCCcccccccccccCCCCCcEEeCCCCcCCccch-hhhhcCCCCcEEECCCccCc
Q 001842 685 DLNGNQLEGMVPKSLANCKMLQVLDLGNNNFSKKFP-CWLKNASSLQVLVLRSNNFS 740 (1007)
Q Consensus 685 ~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p-~~l~~l~~L~~L~L~~N~l~ 740 (1007)
.+++|.++.. ..+.++.+|+.||+++|-|.+.-. ..+..+..|+.|+|.||++-
T Consensus 238 ~lrnN~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 238 NLRNNALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred eecccHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 9999999854 457889999999999999875422 22445788999999999874
No 52
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.86 E-value=7.8e-07 Score=79.57 Aligned_cols=136 Identities=21% Similarity=0.187 Sum_probs=86.4
Q ss_pred CCCEEEccCCcccccCCcchhhcC-cCccceEEccCCcCccccCCCcCCCCCccEEeccCCcccccccccccCCCCCcEE
Q 001842 630 YFSVLDLSNNSLSGTIPTCLITNS-SRTLGVLNLRGNSLNGTLSDRVPGICGLQILDLNGNQLEGMVPKSLANCKMLQVL 708 (1007)
Q Consensus 630 ~L~~L~Ls~N~l~~~~p~~~~~~~-~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L 708 (1007)
.+..+||+.+++- .+++...... ...|+..+|++|.+....+..-...+..+.|+|++|+|+ .+|..+..++.|+.|
T Consensus 28 E~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~l 105 (177)
T KOG4579|consen 28 ELHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSL 105 (177)
T ss_pred Hhhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhc
Confidence 3555666666654 3443332211 115666777777776544444444567788888888888 456668888888888
Q ss_pred eCCCCcCCccchhhhhcCCCCcEEECCCccCccccCCCCCCCCCCCCcEEECCCCcCcccCch
Q 001842 709 DLGNNNFSKKFPCWLKNASSLQVLVLRSNNFSGNISCPRNNVSWPLLQIIDLASNKFSGRLSK 771 (1007)
Q Consensus 709 ~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~ 771 (1007)
+++.|++. ..|.-+..+.++-.|+..+|..... |..+..-+..-..++.++++.+.++.
T Consensus 106 Nl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~ei---d~dl~~s~~~al~~lgnepl~~~~~~ 164 (177)
T KOG4579|consen 106 NLRFNPLN-AEPRVIAPLIKLDMLDSPENARAEI---DVDLFYSSLPALIKLGNEPLGDETKK 164 (177)
T ss_pred ccccCccc-cchHHHHHHHhHHHhcCCCCccccC---cHHHhccccHHHHHhcCCcccccCcc
Confidence 88888885 5566666688888888888876532 33332233344456688888877774
No 53
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.78 E-value=3e-05 Score=77.71 Aligned_cols=180 Identities=21% Similarity=0.206 Sum_probs=90.8
Q ss_pred hHhhCCCCCCcEEEccCcCCCCcchh----hhcCCCCCCEEECCCCCCCCCCchhhhcCCCCCCEEeccCCcCCcccchh
Q 001842 207 CKALSFLPNLQVLSLSRCELSGPINQ----YLANLRSLSAIRLPNNYGLSSPVPEFLANFSHLTALDLGDCQLQGKFPEK 282 (1007)
Q Consensus 207 ~~~l~~l~~L~~L~L~~n~l~~~~~~----~l~~l~~L~~L~L~~n~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~ 282 (1007)
.+++-+||+|+..+||+|.+....|. .+++-+.|++|.+++| .+.-..-.-++. .|.+ |. .-..
T Consensus 85 l~aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~Nn-GlGp~aG~rigk--al~~--la-------~nKK 152 (388)
T COG5238 85 LKALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNN-GLGPIAGGRIGK--ALFH--LA-------YNKK 152 (388)
T ss_pred HHHHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecC-CCCccchhHHHH--HHHH--HH-------HHhh
Confidence 35566677777777777766554443 2344555666666655 322111111110 0000 00 0011
Q ss_pred ccCCCCCCEEeCCCCCCCCCCCCC----CCCCCCCcEEEecCCCCccc-----ccccccCCCCCCEEEccCCcCCCCCc-
Q 001842 283 ILQVPTLETLDLSDNPSLQGSLPH----FPKNSSLRNLILFGTGFSGT-----LPNSIGNLENLANVDISSCNFTGPIP- 352 (1007)
Q Consensus 283 l~~l~~L~~L~Ls~n~~~~~~~~~----~~~l~~L~~L~L~~n~l~~~-----~~~~l~~l~~L~~L~Ls~n~l~~~~p- 352 (1007)
..+-|.|++.....|+...++... +..-..|+++.+..|.+... +-..+..+.+|+.||+.+|.++....
T Consensus 153 aa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~ 232 (388)
T COG5238 153 AADKPKLEVVICGRNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSR 232 (388)
T ss_pred hccCCCceEEEeccchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHH
Confidence 123345555555555544443321 11124566666666655422 11233456788888888887774322
Q ss_pred ---ccccCCCCCcEEEeccCcccCCCCC-------ccCCCCCCEEEcccCCCCCcc
Q 001842 353 ---TSMANLTRLFHLDFSSNHFSGPIPS-------LGLSRNLSYLDLSSNDLTGRI 398 (1007)
Q Consensus 353 ---~~l~~l~~L~~L~L~~n~l~~~~~~-------~~~~~~L~~L~L~~n~l~~~i 398 (1007)
..+...+.|+.|.+..|-++..-.. ....++|..|...+|...+.+
T Consensus 233 ~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~ 288 (388)
T COG5238 233 YLADALCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGI 288 (388)
T ss_pred HHHHHhcccchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCce
Confidence 2334455678888887766532211 122378888888888776543
No 54
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.72 E-value=1.8e-05 Score=57.59 Aligned_cols=36 Identities=42% Similarity=0.656 Sum_probs=16.0
Q ss_pred CCCEEeCCCCcccccCCcCccCCCCCCEEeCCCcccc
Q 001842 850 SLYALNLSQNVLTGSIPSSFGNLEQIESLDLSMNNLS 886 (1007)
Q Consensus 850 ~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~ 886 (1007)
+|++|++++|+++ .+|..+++|++|+.||+++|+++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 3444444444444 23434444444444444444444
No 55
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.68 E-value=7.6e-06 Score=82.93 Aligned_cols=84 Identities=23% Similarity=0.309 Sum_probs=49.2
Q ss_pred CCCCCEEEccCCcCCC--CCcccccCCCCCcEEEeccCcccCCCCCcc-CCCCCCEEEcccCCCCCccCCcccccCCCcC
Q 001842 334 LENLANVDISSCNFTG--PIPTSMANLTRLFHLDFSSNHFSGPIPSLG-LSRNLSYLDLSSNDLTGRILFTPWEQLLNIK 410 (1007)
Q Consensus 334 l~~L~~L~Ls~n~l~~--~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~-~~~~L~~L~L~~n~l~~~i~~~~~~~l~~L~ 410 (1007)
++.++++||.+|.++. ++...+.++|.|++|+++.|++...|.... ...+|+.|-|.+..+.-......+..+|.++
T Consensus 70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vt 149 (418)
T KOG2982|consen 70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVT 149 (418)
T ss_pred hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhh
Confidence 4566666777766652 233345567777777777777765555442 3366777777666655332233345556666
Q ss_pred EEEccCC
Q 001842 411 YVHLNYN 417 (1007)
Q Consensus 411 ~L~L~~n 417 (1007)
++.++.|
T Consensus 150 elHmS~N 156 (418)
T KOG2982|consen 150 ELHMSDN 156 (418)
T ss_pred hhhhccc
Confidence 6666666
No 56
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.64 E-value=0.00014 Score=79.80 Aligned_cols=16 Identities=13% Similarity=0.019 Sum_probs=9.4
Q ss_pred CCCCcEEECCCCcccc
Q 001842 480 LRNLLTLDLSSNKFSR 495 (1007)
Q Consensus 480 l~~L~~L~L~~n~l~~ 495 (1007)
+.+++.|++++|.++.
T Consensus 51 ~~~l~~L~Is~c~L~s 66 (426)
T PRK15386 51 ARASGRLYIKDCDIES 66 (426)
T ss_pred hcCCCEEEeCCCCCcc
Confidence 4566666666665553
No 57
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.64 E-value=4.7e-05 Score=55.46 Aligned_cols=36 Identities=42% Similarity=0.616 Sum_probs=16.5
Q ss_pred CccEEeccCCcccccccccccCCCCCcEEeCCCCcCC
Q 001842 680 GLQILDLNGNQLEGMVPKSLANCKMLQVLDLGNNNFS 716 (1007)
Q Consensus 680 ~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 716 (1007)
+|++|++++|+|+. +|..+++|++|+.|++++|+++
T Consensus 2 ~L~~L~l~~N~i~~-l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQITD-LPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-SS-HGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCcc-cCchHhCCCCCCEEEecCCCCC
Confidence 34445555555552 3334455555555555555554
No 58
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.51 E-value=1.2e-05 Score=85.48 Aligned_cols=293 Identities=19% Similarity=0.185 Sum_probs=180.5
Q ss_pred cceecCC----CCCEEEEeCCCCCccccccCCCccccCCCCCeeeCCCCC-CCCCCCCccccCCCCCCEEeCCCCCCCcc
Q 001842 73 NGVDCDE----AGHVIGLDLSREPIIGGLENATGLFSLQYLRSLNLGFTL-FSGIQIPSRLANLTNLTYLNLSQSGFIQD 147 (1007)
Q Consensus 73 ~gv~c~~----~~~v~~L~L~~~~l~g~~~~~~~l~~l~~L~~L~Ls~n~-~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~ 147 (1007)
.||.++. .|+.++|.+.|+.-.+.-..-....+++++++|++.++. ++...+-..-..+.+|++|+|..|.....
T Consensus 126 g~VV~~~~~Rcgg~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~ 205 (483)
T KOG4341|consen 126 GGVVENMISRCGGFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITD 205 (483)
T ss_pred CcceehHhhhhccccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHH
Confidence 4555542 178888988887544321111223477888999888875 33221222334689999999999754333
Q ss_pred -CCccc-cCCCCCCEEeCCCCCCCCCccccccchHHhhccCCCCceeecCCccccCccchhhHhhCCCCCCcEEEccCcC
Q 001842 148 -IPIEI-SSLTRLVTLDLSAEPSGGFSFLEISNLSLFLQNLTELRELHLDNVDLFASGTDWCKALSFLPNLQVLSLSRCE 225 (1007)
Q Consensus 148 -lp~~l-~~l~~L~~L~Ls~n~~~~l~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~ 225 (1007)
.-..+ ..+++|++++++.+. ......+.....++.+++.+.+.||.=... +.+...-..++.+.++++..|.
T Consensus 206 ~~Lk~la~gC~kL~~lNlSwc~-----qi~~~gv~~~~rG~~~l~~~~~kGC~e~~l-e~l~~~~~~~~~i~~lnl~~c~ 279 (483)
T KOG4341|consen 206 VSLKYLAEGCRKLKYLNLSWCP-----QISGNGVQALQRGCKELEKLSLKGCLELEL-EALLKAAAYCLEILKLNLQHCN 279 (483)
T ss_pred HHHHHHHHhhhhHHHhhhccCc-----hhhcCcchHHhccchhhhhhhhcccccccH-HHHHHHhccChHhhccchhhhc
Confidence 22323 469999999999986 223344455577788888887776532111 1122233556677777777764
Q ss_pred -CCCcch-hhhcCCCCCCEEECCCCCCCCCCchhhhc-CCCCCCEEeccCCcC-Ccccchhc-cCCCCCCEEeCCCCCCC
Q 001842 226 -LSGPIN-QYLANLRSLSAIRLPNNYGLSSPVPEFLA-NFSHLTALDLGDCQL-QGKFPEKI-LQVPTLETLDLSDNPSL 300 (1007)
Q Consensus 226 -l~~~~~-~~l~~l~~L~~L~L~~n~~~~~~~~~~l~-~l~~L~~L~Ls~n~l-~~~~p~~l-~~l~~L~~L~Ls~n~~~ 300 (1007)
+++..- ..-..+..|++|+.+++..+....-..++ ++.+|+.|.++.|+. +..--..+ .+++.|+.+++..+...
T Consensus 280 ~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~ 359 (483)
T KOG4341|consen 280 QLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLI 359 (483)
T ss_pred cccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhccccccee
Confidence 333221 11245778888888888554444444443 578899999888863 22222223 35778888888887543
Q ss_pred CCC-CCCC-CCCCCCcEEEecCCCCcccc-----cccccCCCCCCEEEccCCcCC-CCCcccccCCCCCcEEEeccCcc
Q 001842 301 QGS-LPHF-PKNSSLRNLILFGTGFSGTL-----PNSIGNLENLANVDISSCNFT-GPIPTSMANLTRLFHLDFSSNHF 371 (1007)
Q Consensus 301 ~~~-~~~~-~~l~~L~~L~L~~n~l~~~~-----~~~l~~l~~L~~L~Ls~n~l~-~~~p~~l~~l~~L~~L~L~~n~l 371 (1007)
... +..+ ..++.|+++.++.|...... ...-..+..|+.+.++++... ...-+.+..+++|+.+++-.++-
T Consensus 360 ~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~ 438 (483)
T KOG4341|consen 360 TDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQD 438 (483)
T ss_pred hhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhh
Confidence 332 3333 34888999988877654221 223345678889999988754 33344567788999988887764
No 59
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.51 E-value=0.00027 Score=77.60 Aligned_cols=76 Identities=16% Similarity=0.234 Sum_probs=51.8
Q ss_pred cCCCCCccEEeccCCcccccccccccCCCCCcEEeCCCCcCCccchhhhhcCCCCcEEECCCc-cCccccCCCCCCCCCC
Q 001842 675 VPGICGLQILDLNGNQLEGMVPKSLANCKMLQVLDLGNNNFSKKFPCWLKNASSLQVLVLRSN-NFSGNISCPRNNVSWP 753 (1007)
Q Consensus 675 ~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N-~l~~~~~~~~~~~~l~ 753 (1007)
+..+.+++.|++++|.++. +|. --.+|+.|+++++.--..+|..+ .++|+.|++++| .+.. + | +
T Consensus 48 ~~~~~~l~~L~Is~c~L~s-LP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~s-L--P------~ 112 (426)
T PRK15386 48 IEEARASGRLYIKDCDIES-LPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISG-L--P------E 112 (426)
T ss_pred HHHhcCCCEEEeCCCCCcc-cCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccc-c--c------c
Confidence 4456889999999998884 452 23469999998744335566554 368999999988 4432 2 3 3
Q ss_pred CCcEEECCCCcC
Q 001842 754 LLQIIDLASNKF 765 (1007)
Q Consensus 754 ~L~~L~Ls~N~l 765 (1007)
+|+.|+++.|..
T Consensus 113 sLe~L~L~~n~~ 124 (426)
T PRK15386 113 SVRSLEIKGSAT 124 (426)
T ss_pred ccceEEeCCCCC
Confidence 577777776654
No 60
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.50 E-value=6.9e-05 Score=89.55 Aligned_cols=63 Identities=24% Similarity=0.298 Sum_probs=26.7
Q ss_pred HhhCCCCCCcEEEccCcCCCCcchhhhcCCCCCCEEECCCCCCCCC-CchhhhcCCCCCCEEeccCC
Q 001842 208 KALSFLPNLQVLSLSRCELSGPINQYLANLRSLSAIRLPNNYGLSS-PVPEFLANFSHLTALDLGDC 273 (1007)
Q Consensus 208 ~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~-~~~~~l~~l~~L~~L~Ls~n 273 (1007)
+...++|+|..||+++++++.. ..++++++|++|.+.+- .+.. ..-..+.++++|+.||+|..
T Consensus 167 ~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnL-e~e~~~~l~~LF~L~~L~vLDIS~~ 230 (699)
T KOG3665|consen 167 QLCASFPNLRSLDISGTNISNL--SGISRLKNLQVLSMRNL-EFESYQDLIDLFNLKKLRVLDISRD 230 (699)
T ss_pred HHhhccCccceeecCCCCccCc--HHHhccccHHHHhccCC-CCCchhhHHHHhcccCCCeeecccc
Confidence 3334444444444444444332 33444444444444433 2211 22233444555555555443
No 61
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.49 E-value=0.00012 Score=87.56 Aligned_cols=117 Identities=19% Similarity=0.309 Sum_probs=51.1
Q ss_pred hhHhhC-CCCCCcEEEccCcCCCCc-chhhhcCCCCCCEEECCCCCCCCCCchhhhcCCCCCCEEeccCCcCCc-ccchh
Q 001842 206 WCKALS-FLPNLQVLSLSRCELSGP-INQYLANLRSLSAIRLPNNYGLSSPVPEFLANFSHLTALDLGDCQLQG-KFPEK 282 (1007)
Q Consensus 206 ~~~~l~-~l~~L~~L~L~~n~l~~~-~~~~l~~l~~L~~L~L~~n~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~-~~p~~ 282 (1007)
|+..++ .+|.|+.|.+++-.+... ......++++|..||+++. +++.. ..++++++|+.|.+.+-.+.. ..-..
T Consensus 139 W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~T-nI~nl--~GIS~LknLq~L~mrnLe~e~~~~l~~ 215 (699)
T KOG3665|consen 139 WPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGT-NISNL--SGISRLKNLQVLSMRNLEFESYQDLID 215 (699)
T ss_pred HHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCC-CccCc--HHHhccccHHHHhccCCCCCchhhHHH
Confidence 444432 345555555554433322 1222344555555555554 33332 334455555555555444432 11223
Q ss_pred ccCCCCCCEEeCCCCCCCCCC--C----CCCCCCCCCcEEEecCCCCcc
Q 001842 283 ILQVPTLETLDLSDNPSLQGS--L----PHFPKNSSLRNLILFGTGFSG 325 (1007)
Q Consensus 283 l~~l~~L~~L~Ls~n~~~~~~--~----~~~~~l~~L~~L~L~~n~l~~ 325 (1007)
+.++++|++||+|........ + ..-..+|+|+.|+.+++.+..
T Consensus 216 LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~ 264 (699)
T KOG3665|consen 216 LFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINE 264 (699)
T ss_pred HhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhH
Confidence 445555555555544322222 0 011125555666655555543
No 62
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.40 E-value=0.00051 Score=64.49 Aligned_cols=126 Identities=17% Similarity=0.236 Sum_probs=54.2
Q ss_pred CCccccccCCCceEEEcccCcccccCCccccCCCCCCEEEccCCcccccCCcchhhcCcCccceEEccCCcCccccCCCc
Q 001842 596 IPADIGNFMSGTIFFSAANNSLTGVIPQSVCNATYFSVLDLSNNSLSGTIPTCLITNSSRTLGVLNLRGNSLNGTLSDRV 675 (1007)
Q Consensus 596 i~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~ 675 (1007)
|+...|..+++++.+.+.+ .+.......|..+++|+.+++.++ +...-...+..+. +++.+.+.+ .+.......|
T Consensus 3 i~~~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~--~l~~i~~~~-~~~~i~~~~F 77 (129)
T PF13306_consen 3 IGNNAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCK--SLESITFPN-NLKSIGDNAF 77 (129)
T ss_dssp E-TTTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-T--T-EEEEETS-TT-EE-TTTT
T ss_pred ECHHHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeeccc--ccccccccc-cccccccccc
Confidence 4455566666666666653 455555556666666777776654 4422223333332 566666654 4444445566
Q ss_pred CCCCCccEEeccCCcccccccccccCCCCCcEEeCCCCcCCccchhhhhcCCCC
Q 001842 676 PGICGLQILDLNGNQLEGMVPKSLANCKMLQVLDLGNNNFSKKFPCWLKNASSL 729 (1007)
Q Consensus 676 ~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L 729 (1007)
..+++|+.+++..+ +.......|.++ .|+.+.+.. .++......|.++++|
T Consensus 78 ~~~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 78 SNCTNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKL 128 (129)
T ss_dssp TT-TTECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred cccccccccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccC
Confidence 66666666666554 554555566665 666666654 4444444555555544
No 63
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.37 E-value=0.00051 Score=66.40 Aligned_cols=84 Identities=24% Similarity=0.280 Sum_probs=53.8
Q ss_pred CccEEeccCCcccccccccccCCCCCcEEeCCCCcCCccchhhhhcCCCCcEEECCCccCccccCCCCCCCCCCCCcEEE
Q 001842 680 GLQILDLNGNQLEGMVPKSLANCKMLQVLDLGNNNFSKKFPCWLKNASSLQVLVLRSNNFSGNISCPRNNVSWPLLQIID 759 (1007)
Q Consensus 680 ~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~ 759 (1007)
+...+||++|.+... ..|..++.|.+|.|++|+|+.+.|.--.-+++|+.|.|.+|.+...-. -.-+..+|+|++|.
T Consensus 43 ~~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~d-l~pLa~~p~L~~Lt 119 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGD-LDPLASCPKLEYLT 119 (233)
T ss_pred ccceecccccchhhc--ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhh-cchhccCCccceee
Confidence 455666666666532 245566677777777777776666654456677777777777653221 23456677788887
Q ss_pred CCCCcCc
Q 001842 760 LASNKFS 766 (1007)
Q Consensus 760 Ls~N~l~ 766 (1007)
+-+|+.+
T Consensus 120 ll~Npv~ 126 (233)
T KOG1644|consen 120 LLGNPVE 126 (233)
T ss_pred ecCCchh
Confidence 7777764
No 64
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.04 E-value=0.00084 Score=64.96 Aligned_cols=112 Identities=23% Similarity=0.206 Sum_probs=62.2
Q ss_pred CCCCEEEcccCCCCCccCCcccccCCCcCEEEccCCcCCCccCccccCCCcccccccCCCcccccCccccccCcCCccEE
Q 001842 382 RNLSYLDLSSNDLTGRILFTPWEQLLNIKYVHLNYNSLSGSIPRSLFLLPTLEMLLLSTNQFENQLPEFSNESSSVMNFL 461 (1007)
Q Consensus 382 ~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L 461 (1007)
.....+||++|.+. .++. |..++.|..|.+.+|.|+...|.--.-+++|+.|.+.+|.+.....-...
T Consensus 42 d~~d~iDLtdNdl~-~l~~--lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pL--------- 109 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLR-KLDN--LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPL--------- 109 (233)
T ss_pred cccceecccccchh-hccc--CCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchh---------
Confidence 34555666666664 2221 56667777777777777755544444456677777777766532111111
Q ss_pred EccCCCCCCCCChhhhccCCCCcEEECCCCccccccccCCCCCCCCCCCCCCCccEEEcCCCccc
Q 001842 462 DLSGNRLEGPIPISIFFELRNLLTLDLSSNKFSRLKLASSKPRGTPNLNKQSKLSSLDLSDNQIS 526 (1007)
Q Consensus 462 ~ls~n~l~~~i~~~~f~~l~~L~~L~L~~n~l~~l~~~~~~~~~~p~l~~l~~L~~L~Ls~n~l~ 526 (1007)
..+|+|++|.+-+|.++...-..+ --+..+++|+.||++.-...
T Consensus 110 ----------------a~~p~L~~Ltll~Npv~~k~~YR~-----yvl~klp~l~~LDF~kVt~~ 153 (233)
T KOG1644|consen 110 ----------------ASCPKLEYLTLLGNPVEHKKNYRL-----YVLYKLPSLRTLDFQKVTRK 153 (233)
T ss_pred ----------------ccCCccceeeecCCchhcccCcee-----EEEEecCcceEeehhhhhHH
Confidence 456666666666666653221100 00556777888887765443
No 65
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.93 E-value=0.00058 Score=69.09 Aligned_cols=108 Identities=22% Similarity=0.238 Sum_probs=64.8
Q ss_pred cCCCCCeeeCCCCCCCCCCCCccccCCCCCCEEeCCCC--CCCccCCccccCCCCCCEEeCCCCCCCCCccccccchHHh
Q 001842 105 SLQYLRSLNLGFTLFSGIQIPSRLANLTNLTYLNLSQS--GFIQDIPIEISSLTRLVTLDLSAEPSGGFSFLEISNLSLF 182 (1007)
Q Consensus 105 ~l~~L~~L~Ls~n~~~~~~lp~~l~~l~~L~~L~Ls~n--~~~~~lp~~l~~l~~L~~L~Ls~n~~~~l~~~~~~~~~~~ 182 (1007)
.+..|+.|++.+..++.. ..+-.|++|++|.+|.| +..+.++.-..++++|++|++++|++..+ ..+ ..
T Consensus 41 ~~~~le~ls~~n~gltt~---~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~l-----stl-~p 111 (260)
T KOG2739|consen 41 EFVELELLSVINVGLTTL---TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDL-----STL-RP 111 (260)
T ss_pred cccchhhhhhhccceeec---ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccc-----ccc-ch
Confidence 444555555555444422 34556778888888888 55666666666678888888888874332 111 22
Q ss_pred hccCCCCceeecCCccccCccchhhHhhCCCCCCcEEEc
Q 001842 183 LQNLTELRELHLDNVDLFASGTDWCKALSFLPNLQVLSL 221 (1007)
Q Consensus 183 l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~l~~L~~L~L 221 (1007)
+..+.+|..|++.+|..+.....--..+.-+++|++||-
T Consensus 112 l~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~ 150 (260)
T KOG2739|consen 112 LKELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDG 150 (260)
T ss_pred hhhhcchhhhhcccCCccccccHHHHHHHHhhhhccccc
Confidence 556667777777777665543333344555566665553
No 66
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.75 E-value=0.00042 Score=81.77 Aligned_cols=13 Identities=31% Similarity=0.166 Sum_probs=6.6
Q ss_pred CCcccccccCCCc
Q 001842 430 LPTLEMLLLSTNQ 442 (1007)
Q Consensus 430 l~~L~~L~L~~n~ 442 (1007)
+..++.+++.++.
T Consensus 426 ~~~~~~l~~~~~~ 438 (482)
T KOG1947|consen 426 CSNLKDLDLSGCR 438 (482)
T ss_pred hhccccCCccCcc
Confidence 3445555555544
No 67
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.65 E-value=0.0044 Score=58.07 Aligned_cols=107 Identities=15% Similarity=0.272 Sum_probs=60.2
Q ss_pred ccccCCCCCCEEEccCCcccccCCcchhhcCcCccceEEccCCcCccccCCCcCCCCCccEEeccCCcccccccccccCC
Q 001842 623 QSVCNATYFSVLDLSNNSLSGTIPTCLITNSSRTLGVLNLRGNSLNGTLSDRVPGICGLQILDLNGNQLEGMVPKSLANC 702 (1007)
Q Consensus 623 ~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l 702 (1007)
..|.++++|+.+.+.. .+...-...+..+. +|+.+.+.++ +..+...+|.++++++.+.+.+ .+.......|..+
T Consensus 6 ~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~--~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~ 80 (129)
T PF13306_consen 6 NAFYNCSNLESITFPN-TIKKIGENAFSNCT--SLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNC 80 (129)
T ss_dssp TTTTT-TT--EEEETS-T--EE-TTTTTT-T--T-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-
T ss_pred HHHhCCCCCCEEEECC-CeeEeChhhccccc--cccccccccc-ccccceeeeecccccccccccc-ccccccccccccc
Confidence 4567777888888774 45533344454444 6888888775 6666677777777788888865 5554556677778
Q ss_pred CCCcEEeCCCCcCCccchhhhhcCCCCcEEECCC
Q 001842 703 KMLQVLDLGNNNFSKKFPCWLKNASSLQVLVLRS 736 (1007)
Q Consensus 703 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~ 736 (1007)
++|+.+++..+ ++......|.++ +|+.+.+..
T Consensus 81 ~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 81 TNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp TTECEEEETTT--BEEHTTTTTT--T--EEE-TT
T ss_pred ccccccccCcc-ccEEchhhhcCC-CceEEEECC
Confidence 88888888765 655566667666 777777764
No 68
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.05 E-value=0.00062 Score=68.81 Aligned_cols=80 Identities=26% Similarity=0.266 Sum_probs=44.1
Q ss_pred CCCCCCEEeCCCCCCCCCccccccchHHhhccCCCCceeecCCccccCccchhhHhhCCCCCCcEEEccCcCCCCcch--
Q 001842 154 SLTRLVTLDLSAEPSGGFSFLEISNLSLFLQNLTELRELHLDNVDLFASGTDWCKALSFLPNLQVLSLSRCELSGPIN-- 231 (1007)
Q Consensus 154 ~l~~L~~L~Ls~n~~~~l~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-- 231 (1007)
+++.|++|.|+-|++..+ ..+..|++|++|+|..|.|.+..+ ..-+.++|+|+.|.|..|.-.+..+
T Consensus 39 kMp~lEVLsLSvNkIssL---------~pl~rCtrLkElYLRkN~I~sldE--L~YLknlpsLr~LWL~ENPCc~~ag~n 107 (388)
T KOG2123|consen 39 KMPLLEVLSLSVNKISSL---------APLQRCTRLKELYLRKNCIESLDE--LEYLKNLPSLRTLWLDENPCCGEAGQN 107 (388)
T ss_pred hcccceeEEeeccccccc---------hhHHHHHHHHHHHHHhcccccHHH--HHHHhcCchhhhHhhccCCcccccchh
Confidence 455555555555543222 125667777777777776665432 3445667777777776665554433
Q ss_pred ---hhhcCCCCCCEEE
Q 001842 232 ---QYLANLRSLSAIR 244 (1007)
Q Consensus 232 ---~~l~~l~~L~~L~ 244 (1007)
..+..+++|++||
T Consensus 108 YR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 108 YRRKVLRVLPNLKKLD 123 (388)
T ss_pred HHHHHHHHcccchhcc
Confidence 2234455555554
No 69
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.02 E-value=0.0025 Score=38.53 Aligned_cols=19 Identities=53% Similarity=0.794 Sum_probs=8.4
Q ss_pred CCEEeCCCccccccCCccCc
Q 001842 875 IESLDLSMNNLSGKIPAPLA 894 (1007)
Q Consensus 875 L~~LdLs~N~l~g~ip~~l~ 894 (1007)
|+.||||+|+|+ .||++|+
T Consensus 2 L~~Ldls~n~l~-~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSFS 20 (22)
T ss_dssp ESEEEETSSEES-EEGTTTT
T ss_pred ccEEECCCCcCE-eCChhhc
Confidence 344444444444 4444433
No 70
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.91 E-value=0.006 Score=61.92 Aligned_cols=66 Identities=24% Similarity=0.255 Sum_probs=33.2
Q ss_pred CCCCCcEEeCCCC--cCCccchhhhhcCCCCcEEECCCccCccccCCCCCCCCCCCCcEEECCCCcCcc
Q 001842 701 NCKMLQVLDLGNN--NFSKKFPCWLKNASSLQVLVLRSNNFSGNISCPRNNVSWPLLQIIDLASNKFSG 767 (1007)
Q Consensus 701 ~l~~L~~L~Ls~N--~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~g 767 (1007)
.+++|+.|++|.| ++++-.+.....+++|++|++++|+++.. ..-..+..+.+|..||+.+|.-+.
T Consensus 63 ~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~l-stl~pl~~l~nL~~Ldl~n~~~~~ 130 (260)
T KOG2739|consen 63 KLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDL-STLRPLKELENLKSLDLFNCSVTN 130 (260)
T ss_pred CcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccc-cccchhhhhcchhhhhcccCCccc
Confidence 3445555555555 44433333334445555555555555531 112234455566677777666543
No 71
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.86 E-value=0.0032 Score=38.09 Aligned_cols=20 Identities=70% Similarity=0.800 Sum_probs=12.8
Q ss_pred CCEEeCCCCcccccCCcCccC
Q 001842 851 LYALNLSQNVLTGSIPSSFGN 871 (1007)
Q Consensus 851 L~~L~Ls~N~l~g~ip~~~~~ 871 (1007)
|++||||+|+|+ .||++|++
T Consensus 2 L~~Ldls~n~l~-~ip~~~~~ 21 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSFSN 21 (22)
T ss_dssp ESEEEETSSEES-EEGTTTTT
T ss_pred ccEEECCCCcCE-eCChhhcC
Confidence 566666666666 56666554
No 72
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.84 E-value=0.00059 Score=68.95 Aligned_cols=87 Identities=24% Similarity=0.294 Sum_probs=42.5
Q ss_pred ccEEeccCCcccccccccccCCCCCcEEeCCCCcCCccchhhhhcCCCCcEEECCCccCccccCCCCCCCCCCCCcEEEC
Q 001842 681 LQILDLNGNQLEGMVPKSLANCKMLQVLDLGNNNFSKKFPCWLKNASSLQVLVLRSNNFSGNISCPRNNVSWPLLQIIDL 760 (1007)
Q Consensus 681 L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~L 760 (1007)
.+.|++.++.|+++ .....++.|++|.||-|+|+..-| +..|++|++|+|+.|.|...-. -..+.++++|+.|-|
T Consensus 21 vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~sldE-L~YLknlpsLr~LWL 95 (388)
T KOG2123|consen 21 VKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIESLDE-LEYLKNLPSLRTLWL 95 (388)
T ss_pred hhhhcccCCCccHH--HHHHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhcccccHHH-HHHHhcCchhhhHhh
Confidence 34444444444432 123344455555555555544433 4445555555555555543211 223455666666666
Q ss_pred CCCcCcccCchH
Q 001842 761 ASNKFSGRLSKK 772 (1007)
Q Consensus 761 s~N~l~g~~p~~ 772 (1007)
..|+-.|.-+..
T Consensus 96 ~ENPCc~~ag~n 107 (388)
T KOG2123|consen 96 DENPCCGEAGQN 107 (388)
T ss_pred ccCCcccccchh
Confidence 666666655544
No 73
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=95.64 E-value=0.0026 Score=75.01 Aligned_cols=240 Identities=21% Similarity=0.164 Sum_probs=116.6
Q ss_pred CCCCCEEeCCCCCCCCCccccccchHHhhccCCCCceeecCCc--cccCccchhhHhhCCCCCCcEEEccCcC-CCCcch
Q 001842 155 LTRLVTLDLSAEPSGGFSFLEISNLSLFLQNLTELRELHLDNV--DLFASGTDWCKALSFLPNLQVLSLSRCE-LSGPIN 231 (1007)
Q Consensus 155 l~~L~~L~Ls~n~~~~l~~~~~~~~~~~l~~l~~L~~L~L~~~--~~~~~~~~~~~~l~~l~~L~~L~L~~n~-l~~~~~ 231 (1007)
++.|+.|.+..+. ......+......+++|++|+++++ .....+.........+++|+.|+++++. ++...-
T Consensus 187 ~~~L~~l~l~~~~-----~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l 261 (482)
T KOG1947|consen 187 CPLLKRLSLSGCS-----KITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGL 261 (482)
T ss_pred CchhhHhhhcccc-----cCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhH
Confidence 5666666666543 1111124445666666677666652 1111111122234455677777777776 554444
Q ss_pred hhhcC-CCCCCEEECCCCCCCCCCchh-hhcCCCCCCEEeccCCcCCc--ccchhccCCCCCCEEeCCCCCCCCCCCCCC
Q 001842 232 QYLAN-LRSLSAIRLPNNYGLSSPVPE-FLANFSHLTALDLGDCQLQG--KFPEKILQVPTLETLDLSDNPSLQGSLPHF 307 (1007)
Q Consensus 232 ~~l~~-l~~L~~L~L~~n~~~~~~~~~-~l~~l~~L~~L~Ls~n~l~~--~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~ 307 (1007)
..+.. +++|++|.+.++..++..--. ....++.|++|++++|.... .+.....++++|+.|.+.....
T Consensus 262 ~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~-------- 333 (482)
T KOG1947|consen 262 SALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNG-------- 333 (482)
T ss_pred HHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCC--------
Confidence 44433 667777776666323333222 23346677777777765531 1222344466666655443321
Q ss_pred CCCCCCcEEEecCCCCc---ccccccccCCCCCCEEEccCCcCCCCC-cccccCCCCCcEEEeccCcccCCCCCccCCCC
Q 001842 308 PKNSSLRNLILFGTGFS---GTLPNSIGNLENLANVDISSCNFTGPI-PTSMANLTRLFHLDFSSNHFSGPIPSLGLSRN 383 (1007)
Q Consensus 308 ~~l~~L~~L~L~~n~l~---~~~~~~l~~l~~L~~L~Ls~n~l~~~~-p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~ 383 (1007)
+..++.+.+.+.... .........++.++.+.+..+...... ...+..++.|+ ..+.... .....
T Consensus 334 --c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~l~gc~~l~-~~l~~~~--------~~~~~ 402 (482)
T KOG1947|consen 334 --CPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCGISDLGLELSLRGCPNLT-ESLELRL--------CRSDS 402 (482)
T ss_pred --CccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhhccCcchHHHhcCCcccc-hHHHHHh--------ccCCc
Confidence 344444444433321 122234567788888888777743222 23445566662 2221111 01122
Q ss_pred CCEEEcccCCCCCccCCccccc-CCCcCEEEccCCc
Q 001842 384 LSYLDLSSNDLTGRILFTPWEQ-LLNIKYVHLNYNS 418 (1007)
Q Consensus 384 L~~L~L~~n~l~~~i~~~~~~~-l~~L~~L~L~~n~ 418 (1007)
++.|+++.+.....-....... +..++.+++.++.
T Consensus 403 l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~ 438 (482)
T KOG1947|consen 403 LRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCR 438 (482)
T ss_pred cceEecccCccccccchHHHhhhhhccccCCccCcc
Confidence 7777777776442111111111 4455555555554
No 74
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=92.81 E-value=0.0016 Score=74.67 Aligned_cols=70 Identities=29% Similarity=0.420 Sum_probs=32.2
Q ss_pred hHHhhccCCCCceeecCCccccCccchh-hHhhCCC-CCCcEEEccCcCCCCc----chhhhcCCCCCCEEECCCC
Q 001842 179 LSLFLQNLTELRELHLDNVDLFASGTDW-CKALSFL-PNLQVLSLSRCELSGP----INQYLANLRSLSAIRLPNN 248 (1007)
Q Consensus 179 ~~~~l~~l~~L~~L~L~~~~~~~~~~~~-~~~l~~l-~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~L~~n 248 (1007)
+-..+..+..|+.|++++|.+.+.+... ...+... ..+++|++..|.+++. +.+.+.....++.++++.|
T Consensus 107 l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n 182 (478)
T KOG4308|consen 107 LAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLN 182 (478)
T ss_pred HHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhc
Confidence 3334555555555555555554333221 1222222 3455555555555442 2233444455555555555
No 75
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=90.75 E-value=0.0096 Score=68.38 Aligned_cols=88 Identities=32% Similarity=0.440 Sum_probs=45.4
Q ss_pred CCCCcEEEccCcCCCCcc----hhhhcCCCC-CCEEECCCCCCCCCC----chhhhcCC-CCCCEEeccCCcCCcccc--
Q 001842 213 LPNLQVLSLSRCELSGPI----NQYLANLRS-LSAIRLPNNYGLSSP----VPEFLANF-SHLTALDLGDCQLQGKFP-- 280 (1007)
Q Consensus 213 l~~L~~L~L~~n~l~~~~----~~~l~~l~~-L~~L~L~~n~~~~~~----~~~~l~~l-~~L~~L~Ls~n~l~~~~p-- 280 (1007)
..++++|++++|.++... ...+...+. +..+++..| .+.+. ....+..+ ..+++++++.|.+...-.
T Consensus 203 ~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n-~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~ 281 (478)
T KOG4308|consen 203 LSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASN-KLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRD 281 (478)
T ss_pred cccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhc-CcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHH
Confidence 445555555555554321 122333333 444566555 33322 12223333 456777777777664433
Q ss_pred --hhccCCCCCCEEeCCCCCCCC
Q 001842 281 --EKILQVPTLETLDLSDNPSLQ 301 (1007)
Q Consensus 281 --~~l~~l~~L~~L~Ls~n~~~~ 301 (1007)
..+..++.++.+.++.|++..
T Consensus 282 L~~~l~~~~~l~~l~l~~n~l~~ 304 (478)
T KOG4308|consen 282 LAEVLVSCRQLEELSLSNNPLTD 304 (478)
T ss_pred HHHHHhhhHHHHHhhcccCcccc
Confidence 344556677777777776543
No 76
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=90.32 E-value=0.011 Score=58.41 Aligned_cols=84 Identities=18% Similarity=0.176 Sum_probs=72.7
Q ss_pred ccceEEEEcccccccCCCcccccCCCCCCEEeCCCCcccccCCcCccCCCCCCEEeCCCccccccCCccCcCCCCCCeEE
Q 001842 824 SNIFTSIDFSSNNFEGPIPEEMGRFKSLYALNLSQNVLTGSIPSSFGNLEQIESLDLSMNNLSGKIPAPLANLNFLSVLN 903 (1007)
Q Consensus 824 ~~~l~~ldLs~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~l~ 903 (1007)
....+.||++.|++- ..-..|.-++.+..||+|.|++. ..|..++++..+..+++..|+++ ..|.++..++.+++++
T Consensus 41 ~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e 117 (326)
T KOG0473|consen 41 FKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNE 117 (326)
T ss_pred cceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhh
Confidence 345678999999987 34455777888999999999998 78999999999999999999998 7899999999999999
Q ss_pred ccCCccc
Q 001842 904 LSYNNLV 910 (1007)
Q Consensus 904 ls~N~L~ 910 (1007)
+-.|.+.
T Consensus 118 ~k~~~~~ 124 (326)
T KOG0473|consen 118 QKKTEFF 124 (326)
T ss_pred hccCcch
Confidence 9999863
No 77
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.26 E-value=0.053 Score=52.95 Aligned_cols=33 Identities=21% Similarity=0.445 Sum_probs=15.3
Q ss_pred CceeecCCccccCccchhhHhhCCCCCCcEEEccCc
Q 001842 189 LRELHLDNVDLFASGTDWCKALSFLPNLQVLSLSRC 224 (1007)
Q Consensus 189 L~~L~L~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n 224 (1007)
++.+|-++..+...+ ++.+..++.++.|.+.+|
T Consensus 103 IeaVDAsds~I~~eG---le~L~~l~~i~~l~l~~c 135 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEG---LEHLRDLRSIKSLSLANC 135 (221)
T ss_pred EEEEecCCchHHHHH---HHHHhccchhhhheeccc
Confidence 444555554443322 334444455555555544
No 78
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=89.75 E-value=0.22 Score=27.86 Aligned_cols=16 Identities=44% Similarity=0.717 Sum_probs=7.5
Q ss_pred CCCeEEecCCcCcCCC
Q 001842 582 NTSYMDYSNNNFTTIP 597 (1007)
Q Consensus 582 ~L~~L~ls~n~l~~i~ 597 (1007)
+|+.|++++|+++++|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 4566666666666554
No 79
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.05 E-value=0.17 Score=49.61 Aligned_cols=16 Identities=31% Similarity=0.609 Sum_probs=8.0
Q ss_pred hccCCCCceeecCCcc
Q 001842 183 LQNLTELRELHLDNVD 198 (1007)
Q Consensus 183 l~~l~~L~~L~L~~~~ 198 (1007)
+.+++.++.|.+.++.
T Consensus 121 L~~l~~i~~l~l~~ck 136 (221)
T KOG3864|consen 121 LRDLRSIKSLSLANCK 136 (221)
T ss_pred Hhccchhhhheecccc
Confidence 3444555555555543
No 80
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=86.28 E-value=0.28 Score=30.22 Aligned_cols=21 Identities=33% Similarity=0.384 Sum_probs=10.3
Q ss_pred CCCcEEeCCCCcCCccchhhh
Q 001842 703 KMLQVLDLGNNNFSKKFPCWL 723 (1007)
Q Consensus 703 ~~L~~L~Ls~N~l~~~~p~~l 723 (1007)
++|++|+|++|+|++....++
T Consensus 2 ~~L~~L~l~~n~i~~~g~~~l 22 (24)
T PF13516_consen 2 PNLETLDLSNNQITDEGASAL 22 (24)
T ss_dssp TT-SEEE-TSSBEHHHHHHHH
T ss_pred CCCCEEEccCCcCCHHHHHHh
Confidence 455666666666655444433
No 81
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=85.82 E-value=0.54 Score=29.60 Aligned_cols=14 Identities=50% Similarity=0.643 Sum_probs=8.2
Q ss_pred CCCCEEeCCCcccc
Q 001842 873 EQIESLDLSMNNLS 886 (1007)
Q Consensus 873 ~~L~~LdLs~N~l~ 886 (1007)
++|++|+|++|+|+
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00369 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 45556666666555
No 82
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=85.82 E-value=0.54 Score=29.60 Aligned_cols=14 Identities=50% Similarity=0.643 Sum_probs=8.2
Q ss_pred CCCCEEeCCCcccc
Q 001842 873 EQIESLDLSMNNLS 886 (1007)
Q Consensus 873 ~~L~~LdLs~N~l~ 886 (1007)
++|++|+|++|+|+
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00370 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 45556666666555
No 83
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=84.91 E-value=0.78 Score=28.86 Aligned_cols=21 Identities=43% Similarity=0.672 Sum_probs=12.0
Q ss_pred CCccEEEcCCCccccchhhhHh
Q 001842 513 SKLSSLDLSDNQISGEIPNWIW 534 (1007)
Q Consensus 513 ~~L~~L~Ls~n~l~~~ip~~~~ 534 (1007)
++|++|++++|+++ .+|.+.|
T Consensus 2 ~~L~~L~L~~N~l~-~lp~~~f 22 (26)
T smart00370 2 PNLRELDLSNNQLS-SLPPGAF 22 (26)
T ss_pred CCCCEEECCCCcCC-cCCHHHc
Confidence 34566666666665 5555544
No 84
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=84.91 E-value=0.78 Score=28.86 Aligned_cols=21 Identities=43% Similarity=0.672 Sum_probs=12.0
Q ss_pred CCccEEEcCCCccccchhhhHh
Q 001842 513 SKLSSLDLSDNQISGEIPNWIW 534 (1007)
Q Consensus 513 ~~L~~L~Ls~n~l~~~ip~~~~ 534 (1007)
++|++|++++|+++ .+|.+.|
T Consensus 2 ~~L~~L~L~~N~l~-~lp~~~f 22 (26)
T smart00369 2 PNLRELDLSNNQLS-SLPPGAF 22 (26)
T ss_pred CCCCEEECCCCcCC-cCCHHHc
Confidence 34566666666665 5555544
No 85
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=82.47 E-value=0.21 Score=30.87 Aligned_cols=15 Identities=40% Similarity=0.660 Sum_probs=6.1
Q ss_pred CCCCEEeCCCccccc
Q 001842 873 EQIESLDLSMNNLSG 887 (1007)
Q Consensus 873 ~~L~~LdLs~N~l~g 887 (1007)
++|++|||++|+|++
T Consensus 2 ~~L~~L~l~~n~i~~ 16 (24)
T PF13516_consen 2 PNLETLDLSNNQITD 16 (24)
T ss_dssp TT-SEEE-TSSBEHH
T ss_pred CCCCEEEccCCcCCH
Confidence 344445555554443
No 86
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=79.93 E-value=9 Score=42.81 Aligned_cols=44 Identities=23% Similarity=0.224 Sum_probs=27.1
Q ss_pred CccEEEcCCCccccchhhhHhhcc--ccceEEeccCCcccCCCccc
Q 001842 514 KLSSLDLSDNQISGEIPNWIWEFS--ANLVFLNLSHNLLESLQEPY 557 (1007)
Q Consensus 514 ~L~~L~Ls~n~l~~~ip~~~~~~~--~~L~~L~Ls~N~l~~l~~~~ 557 (1007)
-+..+.++.|.+.......++... +.+..|++++|.....+...
T Consensus 414 ~l~el~ls~~~lka~l~s~in~l~stqtl~kldisgn~mgd~gap~ 459 (553)
T KOG4242|consen 414 VLAELSLSPGPLKAGLESAINKLLSTQTLAKLDISGNGMGDGGAPP 459 (553)
T ss_pred cccCcccCCCcccccHHHHHHhhccCcccccccccCCCcccCCCCc
Confidence 366777888877655544444432 35777777777766655443
No 87
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=79.30 E-value=0.073 Score=52.92 Aligned_cols=87 Identities=22% Similarity=0.239 Sum_probs=61.5
Q ss_pred cCCCCCccEEeccCCcccccccccccCCCCCcEEeCCCCcCCccchhhhhcCCCCcEEECCCccCccccCCCCCCCCCCC
Q 001842 675 VPGICGLQILDLNGNQLEGMVPKSLANCKMLQVLDLGNNNFSKKFPCWLKNASSLQVLVLRSNNFSGNISCPRNNVSWPL 754 (1007)
Q Consensus 675 ~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~ 754 (1007)
+......+.||++.|++- ..-..|+-++.|..||++.|++. ..|..++....+..+++..|..+.. |.+....+.
T Consensus 38 i~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~~~---p~s~~k~~~ 112 (326)
T KOG0473|consen 38 IASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHSQQ---PKSQKKEPH 112 (326)
T ss_pred hhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchhhC---CccccccCC
Confidence 444556677777777766 23345666777778888888773 5667777777777777777777644 777888888
Q ss_pred CcEEECCCCcCc
Q 001842 755 LQIIDLASNKFS 766 (1007)
Q Consensus 755 L~~L~Ls~N~l~ 766 (1007)
++++++-.|+|.
T Consensus 113 ~k~~e~k~~~~~ 124 (326)
T KOG0473|consen 113 PKKNEQKKTEFF 124 (326)
T ss_pred cchhhhccCcch
Confidence 888888888764
No 88
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=71.76 E-value=3.1 Score=26.30 Aligned_cols=15 Identities=47% Similarity=0.725 Sum_probs=10.4
Q ss_pred CCCCCEEeCCCcccc
Q 001842 872 LEQIESLDLSMNNLS 886 (1007)
Q Consensus 872 l~~L~~LdLs~N~l~ 886 (1007)
+++|+.|+|++|+|+
T Consensus 1 L~~L~~L~L~~NkI~ 15 (26)
T smart00365 1 LTNLEELDLSQNKIK 15 (26)
T ss_pred CCccCEEECCCCccc
Confidence 356777777777775
No 89
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=67.91 E-value=3.5 Score=56.06 Aligned_cols=45 Identities=20% Similarity=0.087 Sum_probs=32.7
Q ss_pred CCCccCccccCCCCCCCCCCCCcEEECCCCcCcccCchHHHHhHHHh
Q 001842 734 LRSNNFSGNISCPRNNVSWPLLQIIDLASNKFSGRLSKKWLLTLEKM 780 (1007)
Q Consensus 734 L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~~l~~~ 780 (1007)
|++|+|+... +..+..+++|+.|+|++|+|.|+|...||..|-..
T Consensus 2 LSnN~LstLp--~g~F~~L~sL~~LdLsgNPw~CDC~L~WL~~WL~~ 46 (2740)
T TIGR00864 2 ISNNKISTIE--EGICANLCNLSEIDLSGNPFECDCGLARLPRWAEE 46 (2740)
T ss_pred CCCCcCCccC--hHHhccCCCceEEEeeCCccccccccHHHHHHHHh
Confidence 4555555433 44556677888888999999999999998888643
No 90
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=67.34 E-value=3.7 Score=25.86 Aligned_cols=18 Identities=33% Similarity=0.656 Sum_probs=13.8
Q ss_pred CCCCeEEecCCcCcCCCc
Q 001842 581 PNTSYMDYSNNNFTTIPA 598 (1007)
Q Consensus 581 ~~L~~L~ls~n~l~~i~~ 598 (1007)
++|+.|++++|+++++|+
T Consensus 2 ~~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 2 PSLKELNVSNNQLTSLPE 19 (26)
T ss_pred cccceeecCCCccccCcc
Confidence 457778888888888775
No 91
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=56.84 E-value=4.6 Score=37.73 Aligned_cols=35 Identities=14% Similarity=0.203 Sum_probs=17.2
Q ss_pred eEEEEEeehHHHHHHHHHHHhhhhhhHHHHHHHHh
Q 001842 964 FFVVMSIGFAVGFGAAVSPLMFSVKVNKWYNDLIY 998 (1007)
Q Consensus 964 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 998 (1007)
.++++++|+++.+++++++++|+++.|++...|+|
T Consensus 50 IVIGvVVGVGg~ill~il~lvf~~c~r~kktdfid 84 (154)
T PF04478_consen 50 IVIGVVVGVGGPILLGILALVFIFCIRRKKTDFID 84 (154)
T ss_pred EEEEEEecccHHHHHHHHHhheeEEEecccCcccc
Confidence 56666666665555444444443333333344554
No 92
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=54.47 E-value=8.7 Score=24.69 Aligned_cols=15 Identities=40% Similarity=0.578 Sum_probs=9.3
Q ss_pred CCCcEEeCCCCcCCc
Q 001842 703 KMLQVLDLGNNNFSK 717 (1007)
Q Consensus 703 ~~L~~L~Ls~N~l~~ 717 (1007)
++|++|||++|.|..
T Consensus 2 ~~L~~LdL~~N~i~~ 16 (28)
T smart00368 2 PSLRELDLSNNKLGD 16 (28)
T ss_pred CccCEEECCCCCCCH
Confidence 356666666666653
No 93
>PTZ00382 Variant-specific surface protein (VSP); Provisional
Probab=43.42 E-value=17 Score=31.68 Aligned_cols=25 Identities=16% Similarity=0.117 Sum_probs=12.7
Q ss_pred eEEEEEeehHHHHHHHHHHHhhhhh
Q 001842 964 FFVVMSIGFAVGFGAAVSPLMFSVK 988 (1007)
Q Consensus 964 ~~~~~~~~~~~~~~~~~~~~~~~~~ 988 (1007)
.+++++++.+++++++++++++++.
T Consensus 67 aiagi~vg~~~~v~~lv~~l~w~f~ 91 (96)
T PTZ00382 67 AIAGISVAVVAVVGGLVGFLCWWFV 91 (96)
T ss_pred cEEEEEeehhhHHHHHHHHHhheeE
Confidence 3555555555555555555544433
No 94
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=41.89 E-value=82 Score=35.63 Aligned_cols=62 Identities=29% Similarity=0.216 Sum_probs=30.9
Q ss_pred CCCEEeCCCCCCCccCCccccCC---CCCCEEeCCCCCCCCCccccccchHHhhccCCCCceeecCCcc
Q 001842 133 NLTYLNLSQSGFIQDIPIEISSL---TRLVTLDLSAEPSGGFSFLEISNLSLFLQNLTELRELHLDNVD 198 (1007)
Q Consensus 133 ~L~~L~Ls~n~~~~~lp~~l~~l---~~L~~L~Ls~n~~~~l~~~~~~~~~~~l~~l~~L~~L~L~~~~ 198 (1007)
.+.+++|+.|.....+|..+..+ .-+++++.+.-.+ ..+...-+...+.-+++.+.+++.+.
T Consensus 215 ~lteldls~n~~Kddip~~~n~~a~~~vl~~ld~s~tgi----rlD~l~~~l~~g~~tkl~~~kls~ng 279 (553)
T KOG4242|consen 215 WLTELDLSTNGGKDDIPRTLNKKAGTLVLFKLDRSTTGI----RLDLLTSPLAAGRTTKLTFGKLSRNG 279 (553)
T ss_pred cccccccccCCCCccchhHHHHhhhhhhhhccccccccc----chhhcccccccccccccchhhhccCC
Confidence 46777777777666677544322 2355666554321 01111111223445566666666554
No 95
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=41.55 E-value=8.5 Score=43.97 Aligned_cols=60 Identities=23% Similarity=0.170 Sum_probs=28.4
Q ss_pred ccceEEccCCcCccccC--CCcCCCCCccEEeccCC--ccccccccccc--CCCCCcEEeCCCCcCCc
Q 001842 656 TLGVLNLRGNSLNGTLS--DRVPGICGLQILDLNGN--QLEGMVPKSLA--NCKMLQVLDLGNNNFSK 717 (1007)
Q Consensus 656 ~L~~L~Ls~N~l~~~~~--~~~~~l~~L~~L~L~~N--~l~~~~p~~l~--~l~~L~~L~Ls~N~l~~ 717 (1007)
.+..++|++|++..... ..-...++|..|+|++| .+... ..+. ....|++|-+.+|++..
T Consensus 219 ~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~--~el~K~k~l~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 219 EILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSE--SELDKLKGLPLEELVLEGNPLCT 284 (585)
T ss_pred ceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcch--hhhhhhcCCCHHHeeecCCcccc
Confidence 56677777777653211 11112355666666666 22211 1111 12235556666666543
No 96
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=39.98 E-value=8.7 Score=34.91 Aligned_cols=26 Identities=8% Similarity=0.215 Sum_probs=13.6
Q ss_pred EEEEEeehHHHHHHHHHHHhhhhhhH
Q 001842 965 FVVMSIGFAVGFGAAVSPLMFSVKVN 990 (1007)
Q Consensus 965 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 990 (1007)
++++++|+++|+++++.+++|+.+|+
T Consensus 66 i~~Ii~gv~aGvIg~Illi~y~irR~ 91 (122)
T PF01102_consen 66 IIGIIFGVMAGVIGIILLISYCIRRL 91 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eeehhHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555666655555544444433
No 97
>PF08374 Protocadherin: Protocadherin; InterPro: IPR013585 The structure of protocadherins is similar to that of classic cadherins (IPR002126 from INTERPRO), but they also have some unique features associated with the cytoplasmic domains. They are expressed in a variety of organisms and are found in high concentrations in the brain where they seem to be localised mainly at cell-cell contact sites. Their expression seems to be developmentally regulated [].
Probab=30.58 E-value=36 Score=33.91 Aligned_cols=14 Identities=0% Similarity=-0.171 Sum_probs=5.5
Q ss_pred HHHHHHHhhhhhhH
Q 001842 977 GAAVSPLMFSVKVN 990 (1007)
Q Consensus 977 ~~~~~~~~~~~~~~ 990 (1007)
++|+++++++|++|
T Consensus 51 ILVI~i~v~vR~CR 64 (221)
T PF08374_consen 51 ILVIFIVVLVRYCR 64 (221)
T ss_pred HHHHHHHHHHHHHh
Confidence 33333333344344
No 98
>PF08374 Protocadherin: Protocadherin; InterPro: IPR013585 The structure of protocadherins is similar to that of classic cadherins (IPR002126 from INTERPRO), but they also have some unique features associated with the cytoplasmic domains. They are expressed in a variety of organisms and are found in high concentrations in the brain where they seem to be localised mainly at cell-cell contact sites. Their expression seems to be developmentally regulated [].
Probab=28.99 E-value=45 Score=33.27 Aligned_cols=30 Identities=17% Similarity=0.197 Sum_probs=24.3
Q ss_pred eEEEEEeehHHHHHHHHHHHhhhhhhHHHH
Q 001842 964 FFVVMSIGFAVGFGAAVSPLMFSVKVNKWY 993 (1007)
Q Consensus 964 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 993 (1007)
-++.+++|++.|+++|+.++++.+.+|+++
T Consensus 35 d~~~I~iaiVAG~~tVILVI~i~v~vR~CR 64 (221)
T PF08374_consen 35 DYVKIMIAIVAGIMTVILVIFIVVLVRYCR 64 (221)
T ss_pred cceeeeeeeecchhhhHHHHHHHHHHHHHh
Confidence 477788888888888888888888887665
No 99
>PF01034 Syndecan: Syndecan domain; InterPro: IPR001050 The syndecans are transmembrane proteoglycans which are involved in the organisation of cytoskeleton and/or actin microfilaments, and have important roles as cell surface receptors during cell-cell and/or cell-matrix interactions [, ]. Structurally, these proteins consist of four separate domains: A signal sequence; An extracellular domain (ectodomain) of variable length whose sequence is not evolutionary conserved in the various forms of syndecans. The ectodomain contains the sites of attachment of the heparan sulphate glycosaminoglycan side chains; A transmembrane region; A highly conserved cytoplasmic domain of about 30 to 35 residues, which could interact with cytoskeletal proteins. The proteins known to belong to this family are: Syndecan 1. Syndecan 2 or fibroglycan. Syndecan 3 or neuroglycan or N-syndecan. Syndecan 4 or amphiglycan or ryudocan. Drosophila syndecan. Caenorhabditis elegans probable syndecan (F57C7.3). Syndecan-4, a transmembrane heparan sulphate proteoglycan, is a coreceptor with integrins in cell adhesion. It has been suggested to form a ternary signalling complex with protein kinase Calpha and phosphatidylinositol 4,5-bisphosphate (PIP2). Structural studies have demonstrated that the cytoplasmic domain undergoes a conformational transition and forms a symmetric dimer in the presence of phospholipid activator PIP2, and whose overall structure in solution exhibits a twisted clamp shape having a cavity in the centre of dimeric interface. In addition, it has been observed that the syndecan-4 variable domain interacts, strongly, not only with fatty acyl groups but also the anionic head group of PIP2. These findings indicate that PIP2 promotes oligomerisation of the syndecan-4 cytoplasmic domain for transmembrane signalling and cell-matrix adhesion [, ].; GO: 0008092 cytoskeletal protein binding, 0016020 membrane; PDB: 1EJQ_B 1EJP_B 1YBO_C 1OBY_Q.
Probab=28.24 E-value=15 Score=28.74 Aligned_cols=22 Identities=23% Similarity=0.298 Sum_probs=0.0
Q ss_pred EEEEEeehHHHHHHHHHHHhhh
Q 001842 965 FVVMSIGFAVGFGAAVSPLMFS 986 (1007)
Q Consensus 965 ~~~~~~~~~~~~~~~~~~~~~~ 986 (1007)
..++++|.++|+.+++.+++|.
T Consensus 11 laavIaG~Vvgll~ailLIlf~ 32 (64)
T PF01034_consen 11 LAAVIAGGVVGLLFAILLILFL 32 (64)
T ss_dssp ----------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666666655444444433
No 100
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=26.39 E-value=43 Score=20.89 Aligned_cols=10 Identities=60% Similarity=0.953 Sum_probs=4.2
Q ss_pred CCcEEEccCc
Q 001842 215 NLQVLSLSRC 224 (1007)
Q Consensus 215 ~L~~L~L~~n 224 (1007)
+|++|++++|
T Consensus 3 ~L~~L~l~~C 12 (26)
T smart00367 3 NLRELDLSGC 12 (26)
T ss_pred CCCEeCCCCC
Confidence 3444444443
No 101
>PF06697 DUF1191: Protein of unknown function (DUF1191); InterPro: IPR010605 This family contains hypothetical plant proteins of unknown function.
Probab=23.53 E-value=2.3e+02 Score=30.02 Aligned_cols=9 Identities=22% Similarity=0.549 Sum_probs=3.9
Q ss_pred EEeehHHHH
Q 001842 968 MSIGFAVGF 976 (1007)
Q Consensus 968 ~~~~~~~~~ 976 (1007)
+++|++.|+
T Consensus 215 iv~g~~~G~ 223 (278)
T PF06697_consen 215 IVVGVVGGV 223 (278)
T ss_pred EEEEehHHH
Confidence 344444443
No 102
>PF12606 RELT: Tumour necrosis factor receptor superfamily member 19; InterPro: IPR022248 The members of tumor necrosis factor receptor (TNFR) superfamily have been designated as the "guardians of the immune system" due to their roles in immune cell proliferation, differentiation, activation, and death (apoptosis). RELT (receptor expressed in lymphoid tissues) is a member of the TNFR superfamily. The messenger RNA of RELT is especially abundant in hematologic tissues such as spleen, lymph node, and peripheral blood leukocytes as well as in leukemias and lymphomas. RELT is able to activate the NF-kappaB pathway and selectively binds tumor necrosis factor receptor-associated factor 1 []. RELT like proteins 1 and 2 (RELL1 and RELL2) are two RELT homologues that bind to RELT. The expression of RELL1 at the mRNA level is ubiquitous, whereas expression of RELL2 mRNA is more restricted to particular tissues [].
Probab=22.72 E-value=29 Score=25.96 Aligned_cols=27 Identities=4% Similarity=-0.134 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHhh
Q 001842 973 AVGFGAAVSPLMFSVKVNKWYNDLIYK 999 (1007)
Q Consensus 973 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 999 (1007)
++.+.+++++++....+++.|+.-+|.
T Consensus 9 i~iv~~lLg~~I~~~~K~ygYkht~d~ 35 (50)
T PF12606_consen 9 IFIVMGLLGLSICTTLKAYGYKHTVDP 35 (50)
T ss_pred HHHHHHHHHHHHHHHhhccccccccCC
Confidence 333445556666666677777776664
No 103
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=20.55 E-value=46 Score=38.34 Aligned_cols=39 Identities=38% Similarity=0.512 Sum_probs=18.3
Q ss_pred cCCCCcEEECCCCccccccccCCCCCCCCCCCCCCCccEEEcCCC
Q 001842 479 ELRNLLTLDLSSNKFSRLKLASSKPRGTPNLNKQSKLSSLDLSDN 523 (1007)
Q Consensus 479 ~l~~L~~L~L~~n~l~~l~~~~~~~~~~p~l~~l~~L~~L~Ls~n 523 (1007)
+.+.+..+.+++|++..++..+. + -...++|+.|+|++|
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~ss----l--sq~apklk~L~LS~N 254 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSS----L--SQIAPKLKTLDLSHN 254 (585)
T ss_pred CCcceeeeecccchhhchhhhhH----H--HHhcchhheeecccc
Confidence 34455555555555554432110 0 123355666666666
No 104
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=20.09 E-value=67 Score=44.70 Aligned_cols=33 Identities=27% Similarity=0.338 Sum_probs=29.5
Q ss_pred eccCCcccccccccccCCCCCcEEeCCCCcCCc
Q 001842 685 DLNGNQLEGMVPKSLANCKMLQVLDLGNNNFSK 717 (1007)
Q Consensus 685 ~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 717 (1007)
||++|+|+.+.+..|..+++|+.|+|++|++..
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~C 33 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFEC 33 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCcccc
Confidence 688999998888899999999999999999864
Done!