Query 001842
Match_columns 1007
No_of_seqs 608 out of 5925
Neff 9.7
Searched_HMMs 29240
Date Tue Mar 26 15:51:25 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/001842.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1140-1144//hhsearch_pdb/001842hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 1.0 1 1 762.9 46.9 707 28-947 6-753 (768)
2 3rgz_A Protein brassinosteroid 1.0 1 1 583.9 41.1 636 82-912 78-743 (768)
3 1ziw_A TOLL-like receptor 3; i 1.0 1 1 477.8 48.5 594 107-921 25-633 (680)
4 1ziw_A TOLL-like receptor 3; i 1.0 1 1 476.9 52.5 288 603-938 327-627 (680)
5 3j0a_A TOLL-like receptor 5; m 1.0 1 1 442.2 42.3 300 584-947 293-593 (844)
6 3t6q_A CD180 antigen; protein- 1.0 1 1 437.7 41.7 242 623-915 319-565 (606)
7 3j0a_A TOLL-like receptor 5; m 1.0 1 1 429.6 39.8 294 582-938 267-565 (844)
8 3t6q_A CD180 antigen; protein- 1.0 1 1 428.9 43.5 532 108-778 34-572 (606)
9 3vq2_A TLR4, TOLL-like recepto 1.0 1 1 424.7 38.7 213 625-915 346-563 (606)
10 3vq2_A TLR4, TOLL-like recepto 1.0 1 1 423.3 40.9 543 85-777 15-569 (606)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=1.00 E-value=1 Score=762.93 Aligned_cols=707 Identities=31% Similarity=0.434 Sum_probs=377.2
Q ss_pred CCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCEEEEECCCCCCCCC---CCCCCCCC
Q ss_conf 589978879999995611998989768888789888999999420102409999879995999995332---25888553
Q 001842 28 SGQCQSDQQSLLLQMKNSFILSKDSITSTKLSQWSSHHSSDCCDWNGVDCDEAGHVIGLDLSREPIIGG---LENATGLF 104 (1007)
Q Consensus 28 ~~~~~~~~~~~ll~~k~~~~~~~~~~~~~~~~~w~~~~~~~~c~w~gv~c~~~~~v~~L~L~~~~l~~~---~~~~~~l~ 104 (1007)
++++.++|++|||+||+++. ||. .+++| +.++|||+|.||+|+ .+||++|+|++..+.|. + ++++.
T Consensus 6 ~~~~~~~~~~all~~k~~~~-~~~-----~l~~W--~~~~~~C~w~gv~C~-~~~v~~L~L~~~~l~g~~~~l--~~~l~ 74 (768)
T 3rgz_A 6 PSQSLYREIHQLISFKDVLP-DKN-----LLPDW--SSNKNPCTFDGVTCR-DDKVTSIDLSSKPLNVGFSAV--SSSLL 74 (768)
T ss_dssp --CCHHHHHHHHHHHHTTCS-CTT-----SSTTC--CTTSCGGGSTTEEEE-TTEEEEEECTTSCCCEEHHHH--HHHTT
T ss_pred CCCCCHHHHHHHHHHHHHCC-CCC-----CCCCC--CCCCCCCCCCCEEEC-CCCEEEEECCCCCCCCCCCCC--CHHHH
T ss_conf 56687899999999996678-962-----14687--899987688413878-992789877899867755766--96573
Q ss_pred CCCCCCEEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCC--CCCCCCCCCEEECCCCCCCCCCCCCCCCHHHH
Q ss_conf 6887783327999999998780035999999885899999756871--22288999899579999999753223526776
Q 001842 105 SLQYLRSLNLGFTLFSGIQIPSRLANLTNLTYLNLSQSGFIQDIPI--EISSLTRLVTLDLSAEPSGGFSFLEISNLSLF 182 (1007)
Q Consensus 105 ~l~~L~~L~Ls~n~~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~lp~--~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~~~~ 182 (1007)
++++|+.++++.+.... +|..++++++|++|++++|.+.+.+|. .++++++|++|++++|...+. .....
T Consensus 75 ~L~~L~~l~~~~~~~~~--l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~------~~~~~ 146 (768)
T 3rgz_A 75 SLTGLESLFLSNSHING--SVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFP------GKVSG 146 (768)
T ss_dssp TCTTCCEEECTTSCEEE--CCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECC------SSCCS
T ss_pred CCCCCCCCCCCCCCCCC--CCHHHCCCCCCCEEECCCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCC------CCHHH
T ss_conf 16802246786888678--70332457889989898985787078967872788999898968826774------79778
Q ss_pred HCCCCCCCEEECCCCCCCCCCCHHHHHHCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCCHHH---H
Q ss_conf 2047777546558723667661266750899998699723767999650210189999989789998999882043---2
Q 001842 183 LQNLTELRELHLDNVDLFASGTDWCKALSFLPNLQVLSLSRCELSGPINQYLANLRSLSAIRLPNNYGLSSPVPEF---L 259 (1007)
Q Consensus 183 l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~---l 259 (1007)
+.++ ++|++|++++|.+ .+..+.. +
T Consensus 147 ~~~l---------------------------~~L~~L~Ls~n~l-------------------------~~~~~~~~~~~ 174 (768)
T 3rgz_A 147 GLKL---------------------------NSLEVLDLSANSI-------------------------SGANVVGWVLS 174 (768)
T ss_dssp CCCC---------------------------TTCSEEECCSSCC-------------------------EEETHHHHHHT
T ss_pred HCCC---------------------------CCCCEEECCCCCC-------------------------CCCCCHHHHHH
T ss_conf 5638---------------------------8999898979835-------------------------88587155664
Q ss_pred CCCCCCCEEECCCCCCCCCCCHHCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCE
Q ss_conf 09999879954698587665521049999899918999999888999999998869990177785454301128999989
Q 001842 260 ANFSHLTALDLGDCQLQGKFPEKILQVPTLETLDLSDNPSLQGSLPHFPKNSSLRNLILFGTGFSGTLPNSIGNLENLAN 339 (1007)
Q Consensus 260 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~ 339 (1007)
.++++|++|++++|.+.+..+. ..+++|++|++++| .+.+.+|. ++.+++|++
T Consensus 175 ~~l~~L~~L~Ls~n~l~~~~~~--~~l~~L~~L~Ls~n------------------------~l~~~~~~-l~~l~~L~~ 227 (768)
T 3rgz_A 175 DGCGELKHLAISGNKISGDVDV--SRCVNLEFLDVSSN------------------------NFSTGIPF-LGDCSALQH 227 (768)
T ss_dssp TCCTTCCEEECCSSEEESCCBC--TTCTTCCEEECCSS------------------------CCCSCCCB-CTTCCSCCE
T ss_pred CCCCCCCEEECCCCCCCCCCCC--CCCCCCCEEECCCC------------------------CCCCCCCC-CCCCCCCCE
T ss_conf 3589889898978803465784--54786898989288------------------------27887711-126999998
Q ss_pred EECCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCC
Q ss_conf 97348758788830012878876877014754477897567888788986468787856875633688867898557757
Q 001842 340 VDISSCNFTGPIPTSMANLTRLFHLDFSSNHFSGPIPSLGLSRNLSYLDLSSNDLTGRILFTPWEQLLNIKYVHLNYNSL 419 (1007)
Q Consensus 340 L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l 419 (1007)
|++++|.+.+.+|..+..+++|++|++++|.+.+.++.. ..++|++|++++|.+.+.+|......+++|++|++++|.+
T Consensus 228 L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~-~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l 306 (768)
T 3rgz_A 228 LDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL-PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHF 306 (768)
T ss_dssp EECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC-CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEE
T ss_pred EECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCCC-CCCCCCEEECCCCCCCCCCCHHHHHHCCCCCEEECCCCCC
T ss_conf 979488587816577744888898989888665716724-3687898979178557725888884468688998968967
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHCCCC-CCCEEECCCCCCCCCCC
Q ss_conf 87667113377764401067774666685433237687668973388788977802120489-98689888876664222
Q 001842 420 SGSIPRSLFLLPTLEMLLLSTNQFENQLPEFSNESSSVMNFLDLSGNRLEGPIPISIFFELR-NLLTLDLSSNKFSRLKL 498 (1007)
Q Consensus 420 ~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~ls~n~l~~~i~~~~f~~l~-~L~~L~ls~n~l~~l~~ 498 (1007)
++..|..+..+++|++|++++|.+.+.+|.......++|++|++++|.+.+.+|..+ ..++ +|+.|++++|.+
T Consensus 307 ~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l-~~l~~~L~~L~Ls~N~l----- 380 (768)
T 3rgz_A 307 YGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESL-TNLSASLLTLDLSSNNF----- 380 (768)
T ss_dssp EECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTH-HHHTTTCSEEECCSSEE-----
T ss_pred CCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCHHH-HHHHCCCCEEECCCCCC-----
T ss_conf 784236775587766778978852573797887248888788484784376230989-86322771998627874-----
Q ss_pred CCCCCCCCCCCCCCCCCCEEECCCCCCCCCHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCC
Q ss_conf 57899899997879986699767983435311567620466429854577533877310014677675114545355799
Q 001842 499 ASSKPRGTPNLNKQSKLSSLDLSDNQISGEIPNWIWEFSANLVFLNLSHNLLESLQEPYFIAGVGLLDLHSNELQGSIPY 578 (1007)
Q Consensus 499 ~~~~~~~~p~l~~~~~L~~L~Ls~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~ 578 (1007)
.+.+|..+...
T Consensus 381 ---------------------------~~~~~~~~~~~------------------------------------------ 391 (768)
T 3rgz_A 381 ---------------------------SGPILPNLCQN------------------------------------------ 391 (768)
T ss_dssp ---------------------------EEECCTTTTCS------------------------------------------
T ss_pred ---------------------------CCCCCHHHHHC------------------------------------------
T ss_conf ---------------------------78767666533------------------------------------------
Q ss_pred CCCCCCEEEECCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCHHHCCCCCCC
Q ss_conf 99997737701776867893200268783699813673235677112488988789864884544589102103868634
Q 001842 579 MSPNTSYMDYSNNNFTTIPADIGNFMSGTIFFSAANNSLTGVIPQSVCNATYFSVLDLSNNSLSGTIPTCLITNSSRTLG 658 (1007)
Q Consensus 579 ~~~~L~~L~ls~n~l~~i~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~ls~N~l~~~~p~~~~~~~~~~L~ 658 (1007)
.++.++.+++++|.+++.+|..++.+++|+.|++++|++++.+|..+..+. +|+
T Consensus 392 ------------------------~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~--~L~ 445 (768)
T 3rgz_A 392 ------------------------PKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLS--KLR 445 (768)
T ss_dssp ------------------------TTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCT--TCC
T ss_pred ------------------------CCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHCCC--CCC
T ss_conf ------------------------247761898977846542487775689879898958846685467774499--889
Q ss_pred EEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCHHHHHCCCCCCEEECCCCC
Q ss_conf 48835875764358885877776689556871221255013378999599698985775530655359999689778862
Q 001842 659 VLNLRGNSLNGTLSDRVPGICGLQILDLNGNQLEGMVPKSLANCKMLQVLDLGNNNFSKKFPCWLKNASSLQVLVLRSNN 738 (1007)
Q Consensus 659 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~ 738 (1007)
.|++++|.+++.+|..+..+++|+.|++++|++++.+|..+..+++|+.|++++|++++.+|.+++.+++|++|++++|+
T Consensus 446 ~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~ 525 (768)
T 3rgz_A 446 DLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNS 525 (768)
T ss_dssp EEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSC
T ss_pred EEECCCCCCCCCCCHHHCCCCCCEEEEECCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCC
T ss_conf 89897881547189788287773299901995137588788169989989753995189687688568999989897894
Q ss_pred CCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHCCCC-------------------------------
Q ss_conf 7644689998889998769977788485658668897599854200135-------------------------------
Q 001842 739 FSGNISCPRNNVSWPLLQIIDLASNKFSGRLSKKWLLTLEKMMNAETKS------------------------------- 787 (1007)
Q Consensus 739 l~~~~~~p~~~~~l~~L~~LdLs~N~l~g~~p~~~~~~l~~~~~~~~~~------------------------------- 787 (1007)
++|.+ |..+..+++|+.||+++|++.|.+|..++...... ......
T Consensus 526 l~~~~--p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 602 (768)
T 3rgz_A 526 FSGNI--PAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKI-AANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSE 602 (768)
T ss_dssp CEEEC--CGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCB-CCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGG
T ss_pred CCCCC--CHHHCCCCCCCEEECCCCCCCCCCCHHHHCCCCHH-HHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCH
T ss_conf 33748--87770889899898988846882795786042122-3201345421111344432222332221001355632
Q ss_pred -CCCCCCCCCCCCCCCEEEEEEEEEEECCEEEEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCC
Q ss_conf -6532221124347500233599998612012211014533799734654667882001588889789397884532478
Q 001842 788 -GSELKHLQYGFMGGYQFYQVTVTVTVKSVEILVRKVSNIFTSIDFSSNNFEGPIPEEMGRFKSLYALNLSQNVLTGSIP 866 (1007)
Q Consensus 788 -~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LdLs~N~l~g~ip~~~~~L~~L~~L~Ls~N~l~g~ip 866 (1007)
...+.......... ...+|........+..++.|||++|+++|.+|.++++++.|+.||||+|+++|.||
T Consensus 603 ~~~~l~~~~~~~l~~---------~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip 673 (768)
T 3rgz_A 603 QLNRLSTRNPCNITS---------RVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIP 673 (768)
T ss_dssp GGGGGGGTCCSCTTS---------CEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCC
T ss_pred HHHCCCCCCCCCCCC---------CEECCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCC
T ss_conf 320023211001133---------10046274334033566579785880155587788414157878486880388789
Q ss_pred CCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 68658888888968785241008933759998784981278151159999877754787666799998999999999999
Q 001842 867 SSFGNLEQIESLDLSMNNLSGKIPAPLANLNFLSVLNLSYNNLVGKIPTSTQLQSFSPTSYEGNKGLYGPPLTNDSQTHS 946 (1007)
Q Consensus 867 ~~~~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~l~ls~N~lsg~ip~~~~~~~~~~~~~~gn~~lcg~~~~~~c~~~~ 946 (1007)
..|+++++|+.||||+|+++|.+|..++.+++|++||+|+|+++|.||.++||.+|...+|.|||+|||+|+. .|....
T Consensus 674 ~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~l~-~C~~~~ 752 (768)
T 3rgz_A 674 DEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLP-RCDPSN 752 (768)
T ss_dssp GGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSSSSGGGSCGGGGCSCTEEESTTSC-CCCSCC
T ss_pred HHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCCCHHHCCCCHHHHCCCCHHCCCCCC-CCCCCC
T ss_conf 6784777899898978802386886775788789787968815560899601024897775698321088776-788876
Q ss_pred C
Q ss_conf 9
Q 001842 947 P 947 (1007)
Q Consensus 947 ~ 947 (1007)
.
T Consensus 753 ~ 753 (768)
T 3rgz_A 753 A 753 (768)
T ss_dssp -
T ss_pred C
T ss_conf 6
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=1.00 E-value=1 Score=583.88 Aligned_cols=636 Identities=28% Similarity=0.380 Sum_probs=356.5
Q ss_pred CEEEEECCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCC--CCCCCCCCCEEECCCCCCCCCCCCCC-CCCCCC
Q ss_conf 879995999995332258885536887783327999999998780--03599999988589999975687122-288999
Q 001842 82 HVIGLDLSREPIIGGLENATGLFSLQYLRSLNLGFTLFSGIQIPS--RLANLTNLTYLNLSQSGFIQDIPIEI-SSLTRL 158 (1007)
Q Consensus 82 ~v~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~lp~--~l~~l~~L~~L~Ls~n~~~~~lp~~l-~~l~~L 158 (1007)
++..++++.+++.. + +..++.+++|++|+|++|.+.+. +|. .++++++|++|++++|.+.+.+|..+ .++++|
T Consensus 78 ~L~~l~~~~~~~~~-l--~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L 153 (768)
T 3rgz_A 78 GLESLFLSNSHING-S--VSGFKCSASLTSLDLSRNSLSGP-VTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSL 153 (768)
T ss_dssp TCCEEECTTSCEEE-C--CCCCCCCTTCCEEECCSSEEEEE-GGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTC
T ss_pred CCCCCCCCCCCCCC-C--CHHHCCCCCCCEEECCCCCCCCC-CCCHHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCC
T ss_conf 02246786888678-7--03324578899898989857870-78967872788999898968826774797785638899
Q ss_pred CEEECCCCCCCCCCCCCCCCHHHHHCCCCCCCEEECCCCCCCCCCCHHHHHHCCCCCCCEEECCCCCCCCCCHHHHCCCC
Q ss_conf 89957999999975322352677620477775465587236676612667508999986997237679996502101899
Q 001842 159 VTLDLSAEPSGGFSFLEISNLSLFLQNLTELRELHLDNVDLFASGTDWCKALSFLPNLQVLSLSRCELSGPINQYLANLR 238 (1007)
Q Consensus 159 ~~L~Ls~n~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~l~~l~ 238 (1007)
++|++++|.+.+. .+.....+.++++|++|+++++.+..... +..+++|++|++++|.+.+.++. ++.++
T Consensus 154 ~~L~Ls~n~l~~~----~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-----~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~ 223 (768)
T 3rgz_A 154 EVLDLSANSISGA----NVVGWVLSDGCGELKHLAISGNKISGDVD-----VSRCVNLEFLDVSSNNFSTGIPF-LGDCS 223 (768)
T ss_dssp SEEECCSSCCEEE----THHHHHHTTCCTTCCEEECCSSEEESCCB-----CTTCTTCCEEECCSSCCCSCCCB-CTTCC
T ss_pred CEEECCCCCCCCC----CCHHHHHHCCCCCCCEEECCCCCCCCCCC-----CCCCCCCCEEECCCCCCCCCCCC-CCCCC
T ss_conf 9898979835885----87155664358988989897880346578-----45478689898928827887711-12699
Q ss_pred CCCEEECCCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCCHHCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEE
Q ss_conf 99989789998999882043209999879954698587665521049999899918999999888999999998869990
Q 001842 239 SLSAIRLPNNYGLSSPVPEFLANFSHLTALDLGDCQLQGKFPEKILQVPTLETLDLSDNPSLQGSLPHFPKNSSLRNLIL 318 (1007)
Q Consensus 239 ~L~~L~L~~n~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L 318 (1007)
+|++|++++| .+.+..|..++++++|++|++++|.+.+..|.. .+++|++|++++|
T Consensus 224 ~L~~L~Ls~n-~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n--------------------- 279 (768)
T 3rgz_A 224 ALQHLDISGN-KLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAEN--------------------- 279 (768)
T ss_dssp SCCEEECCSS-CCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC--CCTTCCEEECCSS---------------------
T ss_pred CCCEEECCCC-CCCCCCCHHHHCCCCCCEEECCCCCCCCCCCCC--CCCCCCEEECCCC---------------------
T ss_conf 9998979488-587816577744888898989888665716724--3687898979178---------------------
Q ss_pred CCCCCCCCCCCCCCCC-CCCCEEECCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCEEECCCCCCCCC
Q ss_conf 1777854543011289-999899734875878883001287887687701475447789756788878898646878785
Q 001842 319 FGTGFSGTLPNSIGNL-ENLANVDISSCNFTGPIPTSMANLTRLFHLDFSSNHFSGPIPSLGLSRNLSYLDLSSNDLTGR 397 (1007)
Q Consensus 319 ~~n~~~~~~p~~l~~l-~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~ 397 (1007)
.+.+.+|..+... ++|++|++++|.+.+.+|..+.++++|++|++++|.+.+.+|..
T Consensus 280 ---~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~------------------- 337 (768)
T 3rgz_A 280 ---KFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMD------------------- 337 (768)
T ss_dssp ---EEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHH-------------------
T ss_pred ---CCCCCCCHHHHHHCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHH-------------------
T ss_conf ---5577258888844686889989689677842367755877667789788525737978-------------------
Q ss_pred CCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCC-CCCCCCEEECCCCCCCCCCCHH
Q ss_conf 6875633688867898557757876671133777-6440106777466668543323-7687668973388788977802
Q 001842 398 ILFTPWEQLLNIKYVHLNYNSLSGSIPRSLFLLP-TLEMLLLSTNQFENQLPEFSNE-SSSVMNFLDLSGNRLEGPIPIS 475 (1007)
Q Consensus 398 i~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~-~L~~L~L~~n~l~~~~~~~~~~-~~~~L~~L~ls~n~l~~~i~~~ 475 (1007)
.+..+++|++|++++|.+++.+|..+..++ +|+.|++++|.+.+.++..... ..+.|+.|++++|.+.+.+|..
T Consensus 338 ----~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~ 413 (768)
T 3rgz_A 338 ----TLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPT 413 (768)
T ss_dssp ----HHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGG
T ss_pred ----HHHCCCCCCEEECCCCCCCCCCCHHHHHHHCCCCEEECCCCCCCCCCCHHHHHCCCCCCCEEECCCCCCCCCCCHH
T ss_conf ----8724888878848478437623098986322771998627874787676665332477618989778465424877
Q ss_pred HHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCC-CCCCCCCCEEECCCCCCCCCHHHHHHHCCCCCEEEECCCCCCCCCC
Q ss_conf 120489986898888766642225789989999-7879986699767983435311567620466429854577533877
Q 001842 476 IFFELRNLLTLDLSSNKFSRLKLASSKPRGTPN-LNKQSKLSSLDLSDNQISGEIPNWIWEFSANLVFLNLSHNLLESLQ 554 (1007)
Q Consensus 476 ~f~~l~~L~~L~ls~n~l~~l~~~~~~~~~~p~-l~~~~~L~~L~Ls~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~ 554 (1007)
+ ..+++|+.|++++|+++ +..|. +..+++|+.|++++|.+.+.+|..+..
T Consensus 414 l-~~l~~L~~L~Ls~N~l~---------~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~------------------- 464 (768)
T 3rgz_A 414 L-SNCSELVSLHLSFNYLS---------GTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMY------------------- 464 (768)
T ss_dssp G-GGCTTCCEEECCSSEEE---------SCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGG-------------------
T ss_pred H-HCCCCCCEEECCCCCCC---------CCCCHHHHCCCCCCEEECCCCCCCCCCCHHHCC-------------------
T ss_conf 7-56898798989588466---------854677744998898989788154718978828-------------------
Q ss_pred CCCCCCCCCEEECCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCEE
Q ss_conf 31001467767511454535579999997737701776867893200268783699813673235677112488988789
Q 001842 555 EPYFIAGVGLLDLHSNELQGSIPYMSPNTSYMDYSNNNFTTIPADIGNFMSGTIFFSAANNSLTGVIPQSVCNATYFSVL 634 (1007)
Q Consensus 555 ~~~~~~~L~~L~L~~n~l~~~~~~~~~~L~~L~ls~n~l~~i~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L 634 (1007)
++.++.+++++|.+++.+|..+..+++|++|
T Consensus 465 -------------------------------------------------l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L 495 (768)
T 3rgz_A 465 -------------------------------------------------VKTLETLILDFNDLTGEIPSGLSNCTNLNWI 495 (768)
T ss_dssp -------------------------------------------------CTTCCEEECCSSCCCSCCCGGGGGCTTCCEE
T ss_pred -------------------------------------------------CCCCEEEEECCCCCCCCCCHHHHCCCCCCEE
T ss_conf -------------------------------------------------7773299901995137588788169989989
Q ss_pred ECCCCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCC-
Q ss_conf 8648845445891021038686344883587576435888587777668955687122125501337899959969898-
Q 001842 635 DLSNNSLSGTIPTCLITNSSRTLGVLNLRGNSLNGTLSDRVPGICGLQILDLNGNQLEGMVPKSLANCKMLQVLDLGNN- 713 (1007)
Q Consensus 635 ~ls~N~l~~~~p~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N- 713 (1007)
++++|++++.+|..+..+. +|+.|++++|++++.+|..+..+++|+.|++++|.+++.+|..+..+..+..+++..+
T Consensus 496 ~L~~N~l~~~~p~~~~~l~--~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~ 573 (768)
T 3rgz_A 496 SLSNNRLTGEIPKWIGRLE--NLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGK 573 (768)
T ss_dssp ECCSSCCCSCCCGGGGGCT--TCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSC
T ss_pred ECCCCCCCCCCCHHHHCCC--CCCEEECCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCCHHHHCCCCHHHHHCCCCC
T ss_conf 7539951896876885689--99989897894337488777088989989898884688279578604212232013454
Q ss_pred ---------------------CCCCCCHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHH
Q ss_conf ---------------------57755306553599996897788627644689998889998769977788485658668
Q 001842 714 ---------------------NFSKKFPCWLKNASSLQVLVLRSNNFSGNISCPRNNVSWPLLQIIDLASNKFSGRLSKK 772 (1007)
Q Consensus 714 ---------------------~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~p~~~~~l~~L~~LdLs~N~l~g~~p~~ 772 (1007)
.+.+..+..+..+..+..++++.|.+.|.+ |..+..++.|+.||+++|+++|.+|..
T Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~--~~~~~~l~~L~~LdLs~N~l~g~ip~~ 651 (768)
T 3rgz_A 574 RYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHT--SPTFDNNGSMMFLDMSYNMLSGYIPKE 651 (768)
T ss_dssp EEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEEC--CCSCSSSBCCCEEECCSSCCBSCCCGG
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCEECCCC--CHHHHCCCCCCEEECCCCCCCCCCCHH
T ss_conf 211113444322223322210013556323200232110011331004627--433403356657978588015558778
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEEEEEEECCEEEEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCC
Q ss_conf 89759985420013565322211243475002335999986120122110145337997346546678820015888897
Q 001842 773 WLLTLEKMMNAETKSGSELKHLQYGFMGGYQFYQVTVTVTVKSVEILVRKVSNIFTSIDFSSNNFEGPIPEEMGRFKSLY 852 (1007)
Q Consensus 773 ~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LdLs~N~l~g~ip~~~~~L~~L~ 852 (1007)
+. .+..++.|+|++|+++|.+|..|++++.|+
T Consensus 652 l~------------------------------------------------~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~ 683 (768)
T 3rgz_A 652 IG------------------------------------------------SMPYLFILNLGHNDISGSIPDEVGDLRGLN 683 (768)
T ss_dssp GG------------------------------------------------GCTTCCEEECCSSCCCSCCCGGGGGCTTCC
T ss_pred HH------------------------------------------------CCCCCCEEECCCCCCCCCCCHHHHCCCCCC
T ss_conf 84------------------------------------------------141578784868803887896784777899
Q ss_pred EEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCC-CCCC
Q ss_conf 89397884532478686588888889687852410089337599987849812781-5115
Q 001842 853 ALNLSQNVLTGSIPSSFGNLEQIESLDLSMNNLSGKIPAPLANLNFLSVLNLSYNN-LVGK 912 (1007)
Q Consensus 853 ~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~l~ls~N~-lsg~ 912 (1007)
.||||+|+++|.||..+++++.|++||+|+|+++|.||.. +.+..+....+.+|+ |.|.
T Consensus 684 ~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~-~~~~~~~~~~~~gN~~Lcg~ 743 (768)
T 3rgz_A 684 ILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM-GQFETFPPAKFLNNPGLCGY 743 (768)
T ss_dssp EEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSS-SSGGGSCGGGGCSCTEEEST
T ss_pred EEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCCC-HHHCCCCHHHHCCCCHHCCC
T ss_conf 8989788023868867757887897879688155608996-01024897775698321088
No 3
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=1.00 E-value=1 Score=477.82 Aligned_cols=594 Identities=21% Similarity=0.216 Sum_probs=288.1
Q ss_pred CCCCEEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCHHHHHCCC
Q ss_conf 87783327999999998780035999999885899999756871222889998995799999997532235267762047
Q 001842 107 QYLRSLNLGFTLFSGIQIPSRLANLTNLTYLNLSQSGFIQDIPIEISSLTRLVTLDLSAEPSGGFSFLEISNLSLFLQNL 186 (1007)
Q Consensus 107 ~~L~~L~Ls~n~~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~~~~l~~l 186 (1007)
+++++|++++|.+.+. .+..++++++|++|++++|.+.+..|..++++++|++|++++|.+..+ +.
T Consensus 25 ~~l~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l--------~~----- 90 (680)
T 1ziw_A 25 TNITVLNLTHNQLRRL-PAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQL--------SD----- 90 (680)
T ss_dssp TTCSEEECCSSCCCCC-CGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCC--------CT-----
T ss_pred CCCCEEECCCCCCCCC-CHHHHHCCCCCCEEECCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCC--------CH-----
T ss_conf 8876888989977875-978871787675887889964856977874066768888999856756--------85-----
Q ss_pred CCCCEEECCCCCCCCCCCHHHHHHCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCCHHHHCCCCCCC
Q ss_conf 77754655872366766126675089999869972376799965021018999998978999899988204320999987
Q 001842 187 TELRELHLDNVDLFASGTDWCKALSFLPNLQVLSLSRCELSGPINQYLANLRSLSAIRLPNNYGLSSPVPEFLANFSHLT 266 (1007)
Q Consensus 187 ~~L~~L~L~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~l~~l~~L~ 266 (1007)
.++..+++|++|++++|.+.+..+..++.+++|++|++++| .+.+..+..++++++|+
T Consensus 91 ---------------------~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~ 148 (680)
T 1ziw_A 91 ---------------------KTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHN-GLSSTKLGTQVQLENLQ 148 (680)
T ss_dssp ---------------------TTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSS-CCSCCCCCSSSCCTTCC
T ss_pred ---------------------HHHCCCCCCCEEECCCCCCCCCCHHHCCCCCCCCEEECCCC-CCCCCCCHHHCCCCCCC
T ss_conf ---------------------45303888898989899668539667415678888989899-52466721112455677
Q ss_pred EEECCCCCCCCCCCHHCC--CCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCEEECCC
Q ss_conf 995469858766552104--999989991899999988899999999886999017778545430112899998997348
Q 001842 267 ALDLGDCQLQGKFPEKIL--QVPTLETLDLSDNPSLQGSLPHFPKNSSLRNLILFGTGFSGTLPNSIGNLENLANVDISS 344 (1007)
Q Consensus 267 ~L~L~~n~l~~~~~~~l~--~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~ 344 (1007)
+|++++|.+.+..+..+. .+++|+.|++++|. +.+..+..+..+.+|+.+++++
T Consensus 149 ~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~------------------------l~~~~~~~~~~l~~L~~L~l~~ 204 (680)
T 1ziw_A 149 ELLLSNNKIQALKSEELDIFANSSLKKLELSSNQ------------------------IKEFSPGCFHAIGRLFGLFLNN 204 (680)
T ss_dssp EEECCSSCCCCBCHHHHGGGTTCEESEEECTTCC------------------------CCCBCTTGGGGSSEECEEECTT
T ss_pred EEECCCCCCCCCCHHHHHCCCCCCCCEEECCCCC------------------------CCCCCHHHHHHHHHHHHHHCCC
T ss_conf 7974588436529788624466632179888982------------------------5655815553223445543056
Q ss_pred CCCCCCCCCCC---CCCCCCCEEEECCCCCCCCCCCCCCC---CCCCEEECCCCCCCCCCCCCCCCCCCCCCEEECCCCC
Q ss_conf 75878883001---28788768770147544778975678---8878898646878785687563368886789855775
Q 001842 345 CNFTGPIPTSM---ANLTRLFHLDFSSNHFSGPIPSLGLS---RNLSYLDLSSNDLTGRILFTPWEQLLNIKYVHLNYNS 418 (1007)
Q Consensus 345 n~l~~~~~~~l---~~l~~L~~L~L~~n~l~~~~~~~~~~---~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~ 418 (1007)
+.+.......+ ...++|+.|++++|.+.+..+..+.. ++|+.|++++|.+.+..+.. +..+++|+++++++|.
T Consensus 205 ~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~-~~~l~~L~~L~L~~n~ 283 (680)
T 1ziw_A 205 VQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDS-FAWLPQLEYFFLEYNN 283 (680)
T ss_dssp CCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTT-TTTCTTCCEEECCSCC
T ss_pred CCCCHHHHHHHHHHHHHCCCCEEECCCCCCCCCCHHHHHCCCCCCCCEEECCCCCCCCCCCCC-CCCCCCCCEEECCCCC
T ss_conf 646805677787775315100887457743646866751467677888778788767568021-1674105685577885
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCC
Q ss_conf 78766711337776440106777466668543323768766897338878897780212048998689888876664222
Q 001842 419 LSGSIPRSLFLLPTLEMLLLSTNQFENQLPEFSNESSSVMNFLDLSGNRLEGPIPISIFFELRNLLTLDLSSNKFSRLKL 498 (1007)
Q Consensus 419 l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~ls~n~l~~~i~~~~f~~l~~L~~L~ls~n~l~~l~~ 498 (1007)
+.+..+..+..+++|+.+++++|...+.++.. .+. .+....|..+++|+.|++++|.+..+.
T Consensus 284 l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~----------------~lp-~i~~~~~~~l~~L~~L~l~~n~l~~~~- 345 (680)
T 1ziw_A 284 IQHLFSHSLHGLFNVRYLNLKRSFTKQSISLA----------------SLP-KIDDFSFQWLKCLEHLNMEDNDIPGIK- 345 (680)
T ss_dssp BSEECTTTTTTCTTCCEEECTTCBCCC----------------------CC-EECTTTTTTCTTCCEEECCSCCBCCCC-
T ss_pred CCCCCHHHHCCCCCCCEEECCCHHHHCCCCCC----------------CCC-CCCHHHCCCCCCCCEEECCCCCCCCCC-
T ss_conf 67658656267888557736331321333335----------------545-438656246777888879898268788-
Q ss_pred CCCCCCCCCC-CCCCCCCCEEECCCCCCCCCHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCC
Q ss_conf 5789989999-787998669976798343531156762046642985457753387731001467767511454535579
Q 001842 499 ASSKPRGTPN-LNKQSKLSSLDLSDNQISGEIPNWIWEFSANLVFLNLSHNLLESLQEPYFIAGVGLLDLHSNELQGSIP 577 (1007)
Q Consensus 499 ~~~~~~~~p~-l~~~~~L~~L~Ls~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~ 577 (1007)
+. +..+++|+.|++++|.+...
T Consensus 346 --------~~~~~~l~~L~~L~Ls~n~~~~~------------------------------------------------- 368 (680)
T 1ziw_A 346 --------SNMFTGLINLKYLSLSNSFTSLR------------------------------------------------- 368 (680)
T ss_dssp --------TTTTTTCTTCCEEECTTCBSCCC-------------------------------------------------
T ss_pred --------HHHHCCCCCCCEEECCCCCHHHH-------------------------------------------------
T ss_conf --------55740656872898879801443-------------------------------------------------
Q ss_pred CCCCCCCEEEECCCCCCCCCCCCCC--CCCCCEEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCC-CCHHHCCC
Q ss_conf 9999977377017768678932002--68783699813673235677112488988789864884544589-10210386
Q 001842 578 YMSPNTSYMDYSNNNFTTIPADIGN--FMSGTIFFSAANNSLTGVIPQSVCNATYFSVLDLSNNSLSGTIP-TCLITNSS 654 (1007)
Q Consensus 578 ~~~~~L~~L~ls~n~l~~i~~~~~~--~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~ls~N~l~~~~p-~~~~~~~~ 654 (1007)
.++...+. ..+.++.+++++|.+++..|..+..+++|+.|++++|.+.+.++ ..+..+.
T Consensus 369 -----------------~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~- 430 (680)
T 1ziw_A 369 -----------------TLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLE- 430 (680)
T ss_dssp -----------------EECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCT-
T ss_pred -----------------HCCHHHHCCCCCCCCCEEECCCCCCCEECHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCC-
T ss_conf -----------------23532202455686766889999777677544207788888867787575435755325754-
Q ss_pred CCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCC--CCCCCCCCCCCCCCEEECCCCCCCCCCHHHHHCCCCCCEE
Q ss_conf 86344883587576435888587777668955687122--1255013378999599698985775530655359999689
Q 001842 655 RTLGVLNLRGNSLNGTLSDRVPGICGLQILDLNGNQLE--GMVPKSLANCKMLQVLDLGNNNFSKKFPCWLKNASSLQVL 732 (1007)
Q Consensus 655 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~--~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L 732 (1007)
+|+.|++++|++.+..+..|..+++|+.|++++|.+. +..|..|..+++|+.|++++|++++..+..|.++++|+.|
T Consensus 431 -~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L 509 (680)
T 1ziw_A 431 -NIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEIL 509 (680)
T ss_dssp -TCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred -CCCEEECCCCCCCEECHHHHHCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEE
T ss_conf -6127844899754227645500754310110146442256677645557878999899998776794463455346888
Q ss_pred ECCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEEEEEE
Q ss_conf 77886276446899988899987699777884856586688975998542001356532221124347500233599998
Q 001842 733 VLRSNNFSGNISCPRNNVSWPLLQIIDLASNKFSGRLSKKWLLTLEKMMNAETKSGSELKHLQYGFMGGYQFYQVTVTVT 812 (1007)
Q Consensus 733 ~L~~N~l~~~~~~p~~~~~l~~L~~LdLs~N~l~g~~p~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 812 (1007)
++++|++++.. +..+ |..
T Consensus 510 ~Ls~N~l~~~~--~~~~--------------------~~~---------------------------------------- 527 (680)
T 1ziw_A 510 DLQHNNLARLW--KHAN--------------------PGG---------------------------------------- 527 (680)
T ss_dssp ECCSSCCGGGG--STTS--------------------TTS----------------------------------------
T ss_pred ECCCCCCCCCC--HHHC--------------------CCC----------------------------------------
T ss_conf 58899730000--0004--------------------677----------------------------------------
Q ss_pred ECCEEEEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCC
Q ss_conf 61201221101453379973465466788200158888978939788453247868658888888968785241008933
Q 001842 813 VKSVEILVRKVSNIFTSIDFSSNNFEGPIPEEMGRFKSLYALNLSQNVLTGSIPSSFGNLEQIESLDLSMNNLSGKIPAP 892 (1007)
Q Consensus 813 ~~~~~~~~~~~~~~l~~LdLs~N~l~g~ip~~~~~L~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~ 892 (1007)
.......+..++.|+|++|+++...+..|+++++|+.|+|++|++++..+..|.++++|+.|+|++|++++..|..
T Consensus 528 ----~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 603 (680)
T 1ziw_A 528 ----PIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKV 603 (680)
T ss_dssp ----CCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHH
T ss_pred ----CCHHHCCCCCCCEEECCCCCCCCCCHHHCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHH
T ss_conf ----4142337998888889999788779777346667522389999777679768378988888989999687059668
Q ss_pred CC-CCCCCCEEECCCCCCCCCCCCCCCCCC
Q ss_conf 75-999878498127815115999987775
Q 001842 893 LA-NLNFLSVLNLSYNNLVGKIPTSTQLQS 921 (1007)
Q Consensus 893 l~-~l~~L~~l~ls~N~lsg~ip~~~~~~~ 921 (1007)
+. .+++|+.+++++|++.+..+....|..
T Consensus 604 ~~~~~~~L~~l~l~~N~~~c~c~~~~~~~~ 633 (680)
T 1ziw_A 604 FGPAFRNLTELDMRFNPFDCTCESIAWFVN 633 (680)
T ss_dssp HHHHHTTCSEEECTTCCCCBCCCCCSSEEC
T ss_pred HCCCCCCCCEEECCCCCCCCCCCCHHHHHH
T ss_conf 301146657798318970257766899999
No 4
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=1.00 E-value=1 Score=476.94 Aligned_cols=288 Identities=19% Similarity=0.172 Sum_probs=218.3
Q ss_pred CCCCCEEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCC--CCCCHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCC
Q ss_conf 687836998136732356771124889887898648845445--891021038686344883587576435888587777
Q 001842 603 FMSGTIFFSAANNSLTGVIPQSVCNATYFSVLDLSNNSLSGT--IPTCLITNSSRTLGVLNLRGNSLNGTLSDRVPGICG 680 (1007)
Q Consensus 603 ~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~ls~N~l~~~--~p~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~ 680 (1007)
.+++++.+++++|.+++..+..+..+++|++|++++|.+... ....+.....+.|+.|++++|++++..+..|..+++
T Consensus 327 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~ 406 (680)
T 1ziw_A 327 WLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGH 406 (680)
T ss_dssp TCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTT
T ss_pred CCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCHHHHHCCHHHHCCCCCCCCCEEECCCCCCCEECHHHHHCCCC
T ss_conf 67778888798982687885574065687289887980144323532202455686766889999777677544207788
Q ss_pred CCEEECCCCCCCCCCC-CCCCCCCCCCEEECCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCEEE
Q ss_conf 6689556871221255-013378999599698985775530655359999689778862764468999888999876997
Q 001842 681 LQILDLNGNQLEGMVP-KSLANCKMLQVLDLGNNNFSKKFPCWLKNASSLQVLVLRSNNFSGNISCPRNNVSWPLLQIID 759 (1007)
Q Consensus 681 L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~p~~~~~l~~L~~Ld 759 (1007)
|+.|++++|++.+.+| ..|.++++|+.|++++|++++..+..|..+++|+.|++++|.+.+....|..+..+++|+.|+
T Consensus 407 L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~ 486 (680)
T 1ziw_A 407 LEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILD 486 (680)
T ss_dssp CCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEE
T ss_pred CCEEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCEECHHHHHCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCEEE
T ss_conf 88886778757543575532575461278448997542276455007543101101464422566776455578789998
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEEEEEEECCEEEEEECCCCCEEEEECCCCCCCC
Q ss_conf 77884856586688975998542001356532221124347500233599998612012211014533799734654667
Q 001842 760 LASNKFSGRLSKKWLLTLEKMMNAETKSGSELKHLQYGFMGGYQFYQVTVTVTVKSVEILVRKVSNIFTSIDFSSNNFEG 839 (1007)
Q Consensus 760 Ls~N~l~g~~p~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LdLs~N~l~g 839 (1007)
+++|.+.+..+..+ ..+..++.|++++|++++
T Consensus 487 Ls~N~l~~i~~~~~------------------------------------------------~~l~~L~~L~Ls~N~l~~ 518 (680)
T 1ziw_A 487 LSNNNIANINDDML------------------------------------------------EGLEKLEILDLQHNNLAR 518 (680)
T ss_dssp CCSSCCCCCCTTTT------------------------------------------------TTCTTCCEEECCSSCCGG
T ss_pred CCCCCCCCCCHHHH------------------------------------------------CCCCCCCEEECCCCCCCC
T ss_conf 99998776794463------------------------------------------------455346888588997300
Q ss_pred CC--------CCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCC
Q ss_conf 88--------2001588889789397884532478686588888889687852410089337599987849812781511
Q 001842 840 PI--------PEEMGRFKSLYALNLSQNVLTGSIPSSFGNLEQIESLDLSMNNLSGKIPAPLANLNFLSVLNLSYNNLVG 911 (1007)
Q Consensus 840 ~i--------p~~~~~L~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~l~ls~N~lsg 911 (1007)
.. +..|++++.|+.|+|++|+++...+..|+++++|+.|||++|++++..+..|..+++|+.+++++|++++
T Consensus 519 ~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ 598 (680)
T 1ziw_A 519 LWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITS 598 (680)
T ss_dssp GGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCB
T ss_pred CCHHHCCCCCCHHHCCCCCCCEEECCCCCCCCCCHHHCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCC
T ss_conf 00000467741423379988888899997887797773466675223899997776797683789888889899996870
Q ss_pred CCCCCC--CCCCCCCCCCCCCCCCCCCCC
Q ss_conf 599998--777547876667999989999
Q 001842 912 KIPTST--QLQSFSPTSYEGNKGLYGPPL 938 (1007)
Q Consensus 912 ~ip~~~--~~~~~~~~~~~gn~~lcg~~~ 938 (1007)
..|... .+..+....+.|||..|.++.
T Consensus 599 ~~~~~~~~~~~~L~~l~l~~N~~~c~c~~ 627 (680)
T 1ziw_A 599 VEKKVFGPAFRNLTELDMRFNPFDCTCES 627 (680)
T ss_dssp CCHHHHHHHHTTCSEEECTTCCCCBCCCC
T ss_pred CCHHHHCCCCCCCCEEECCCCCCCCCCCC
T ss_conf 59668301146657798318970257766
No 5
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=1.00 E-value=1 Score=442.18 Aligned_cols=300 Identities=20% Similarity=0.219 Sum_probs=201.0
Q ss_pred CEEEECCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCHHHCCCCCCCEEECC
Q ss_conf 73770177686789320026878369981367323567711248898878986488454458910210386863448835
Q 001842 584 SYMDYSNNNFTTIPADIGNFMSGTIFFSAANNSLTGVIPQSVCNATYFSVLDLSNNSLSGTIPTCLITNSSRTLGVLNLR 663 (1007)
Q Consensus 584 ~~L~ls~n~l~~i~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~ls~N~l~~~~p~~~~~~~~~~L~~L~Ls 663 (1007)
+.|++++|+++.++...+..+++|+.|++++|.+++..|..+..+++|+.|++++|.+.+..+..+..+. +|+.|+++
T Consensus 293 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~--~L~~L~Ls 370 (844)
T 3j0a_A 293 KVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLE--KLQTLDLR 370 (844)
T ss_dssp CEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCC--CCCEEEEE
T ss_pred CEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHHCCCC--CCCEEECC
T ss_conf 9998979818987968836888999898989978851878846899999898989987762866613788--89998898
Q ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCH-HHHHCCCCCCEEECCCCCCCCC
Q ss_conf 875764358885877776689556871221255013378999599698985775530-6553599996897788627644
Q 001842 664 GNSLNGTLSDRVPGICGLQILDLNGNQLEGMVPKSLANCKMLQVLDLGNNNFSKKFP-CWLKNASSLQVLVLRSNNFSGN 742 (1007)
Q Consensus 664 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p-~~l~~l~~L~~L~L~~N~l~~~ 742 (1007)
+|.+++.. .+++|+.|++++|+++ .+|.. ...++.|++++|++++... ..+.++++|+.|++++|++++.
T Consensus 371 ~N~l~~i~-----~~~~L~~L~l~~N~l~-~l~~~---~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~ 441 (844)
T 3j0a_A 371 DNALTTIH-----FIPSIPDIFLSGNKLV-TLPKI---NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSC 441 (844)
T ss_dssp TCCSCCCS-----SCCSCSEEEEESCCCC-CCCCC---CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCC
T ss_pred CCCCCCCC-----CCCCCCHHCCCCCCCC-CCCCC---CCCCCEEECCCCCCCCCCHHHHHHCCCCCCEEECCCCCCCCC
T ss_conf 99778616-----8898232005899723-14554---554312214567534575566651277666666778712555
Q ss_pred CCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEEEEEEECCEEEEEEC
Q ss_conf 68999888999876997778848565866889759985420013565322211243475002335999986120122110
Q 001842 743 ISCPRNNVSWPLLQIIDLASNKFSGRLSKKWLLTLEKMMNAETKSGSELKHLQYGFMGGYQFYQVTVTVTVKSVEILVRK 822 (1007)
Q Consensus 743 ~~~p~~~~~l~~L~~LdLs~N~l~g~~p~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 822 (1007)
.. ...+..+++|+.|++++|.+.+..+... .. ....
T Consensus 442 ~~-~~~~~~~~~L~~L~Ls~N~l~~~~~~~~---------------------~~----------------------~~~~ 477 (844)
T 3j0a_A 442 SG-DQTPSENPSLEQLFLGENMLQLAWETEL---------------------CW----------------------DVFE 477 (844)
T ss_dssp CS-SSSSCSCTTCCBCEEESCCCSSSCCSCC---------------------CS----------------------SCSS
T ss_pred CC-CCCCCCCCCCCCCCCCCCCCCCCCCCCC---------------------CH----------------------HHHC
T ss_conf 54-3335668731002477773644101355---------------------35----------------------5544
Q ss_pred CCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEE
Q ss_conf 14533799734654667882001588889789397884532478686588888889687852410089337599987849
Q 001842 823 VSNIFTSIDFSSNNFEGPIPEEMGRFKSLYALNLSQNVLTGSIPSSFGNLEQIESLDLSMNNLSGKIPAPLANLNFLSVL 902 (1007)
Q Consensus 823 ~~~~l~~LdLs~N~l~g~ip~~~~~L~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~l 902 (1007)
.++.++.|+|++|++++.+|..|.++++|+.|+|++|++++.+|..+. ++|+.|||++|++++.+|..+. +|+.+
T Consensus 478 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~~---~L~~l 552 (844)
T 3j0a_A 478 GLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDVFV---SLSVL 552 (844)
T ss_dssp CBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCCCS---SCCEE
T ss_pred CCCCCCEEECCCCCCCCCCHHHCCCHHHHHEEECCCCCCCCCCHHHHH--CCCCEEECCCCCCCCCCHHHHC---CCCEE
T ss_conf 755365777889856553955704501221569999978745710110--0455888988847888966837---76889
Q ss_pred ECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 812781511599998777547876667999989999999999999
Q 001842 903 NLSYNNLVGKIPTSTQLQSFSPTSYEGNKGLYGPPLTNDSQTHSP 947 (1007)
Q Consensus 903 ~ls~N~lsg~ip~~~~~~~~~~~~~~gn~~lcg~~~~~~c~~~~~ 947 (1007)
++++|++.+.++.. .|......++..++|.+....|..+..
T Consensus 553 ~l~~Np~~C~c~~~----~f~~~~~~~~~~~~~~~~~~~C~~p~~ 593 (844)
T 3j0a_A 553 DITHNKFICECELS----TFINWLNHTNVTIAGPPADIYCVYPDS 593 (844)
T ss_dssp EEEEECCCCSSSCC----SHHHHHHHTTTTTCCCGGGCCCSSCSS
T ss_pred EECCCCCCCCCCCH----HHHHHHHHCCCCCCCCCCCCCCCCCHH
T ss_conf 93199702536618----999999736853026600275578066
No 6
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=1.00 E-value=1 Score=437.74 Aligned_cols=242 Identities=22% Similarity=0.216 Sum_probs=151.8
Q ss_pred CCCCCCCCCCEEECCCCCCCCCCCCC-HHHCCCCCCCEEECCCCCCCCCC--CCCCCCCCCCCEEECCCCCCCCCCCCCC
Q ss_conf 11248898878986488454458910-21038686344883587576435--8885877776689556871221255013
Q 001842 623 QSVCNATYFSVLDLSNNSLSGTIPTC-LITNSSRTLGVLNLRGNSLNGTL--SDRVPGICGLQILDLNGNQLEGMVPKSL 699 (1007)
Q Consensus 623 ~~~~~~~~L~~L~ls~N~l~~~~p~~-~~~~~~~~L~~L~Ls~N~l~~~~--~~~~~~l~~L~~L~Ls~N~l~~~~p~~~ 699 (1007)
..+..+++|+.|++++|.+.+.++.. +..+. +|+.|++++|.+++.. +..+..+++|+.|++++|++.+..|..|
T Consensus 319 ~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~--~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 396 (606)
T 3t6q_A 319 ISASNFPSLTHLSIKGNTKRLELGTGCLENLE--NLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAF 396 (606)
T ss_dssp GCGGGCTTCSEEECCSCSSCCBCCSSTTTTCT--TCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTT
T ss_pred HHHHCCCCCCEEECCCCCCCCCCCHHHHHCCC--CCCEEECCCCCCCCCCCCCHHCCCCCCCCEEECCCCCCCCCCHHHH
T ss_conf 23301576898889899744434624550667--5898878899666456752210567888989898996775788873
Q ss_pred CCCCCCCEEECCCCCCCCCCHH-HHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCC-CHHHHHHH
Q ss_conf 3789995996989857755306-553599996897788627644689998889998769977788485658-66889759
Q 001842 700 ANCKMLQVLDLGNNNFSKKFPC-WLKNASSLQVLVLRSNNFSGNISCPRNNVSWPLLQIIDLASNKFSGRL-SKKWLLTL 777 (1007)
Q Consensus 700 ~~l~~L~~L~Ls~N~l~~~~p~-~l~~l~~L~~L~L~~N~l~~~~~~p~~~~~l~~L~~LdLs~N~l~g~~-p~~~~~~l 777 (1007)
..+++|+.|++++|++++..+. .+.++++|+.|++++|.+.+.. |..+..+++|+.|++++|++.+.. +..
T Consensus 397 ~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~L~~n~l~~~~~~~~----- 469 (606)
T 3t6q_A 397 KECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISS--EQLFDGLPALQHLNLQGNHFPKGNIQKT----- 469 (606)
T ss_dssp TTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTC--TTTTTTCTTCCEEECTTCBCGGGEECSS-----
T ss_pred CCCCCCCEEECCCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCC--HHHHHCCCCCCEEECCCCCCCCCCCCCC-----
T ss_conf 477457768788886777565212417655888989898557768--7787378878889898998885434543-----
Q ss_pred HHHHHHCCCCCCCCCCCCCCCCCCCEEEEEEEEEEECCEEEEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEECC
Q ss_conf 98542001356532221124347500233599998612012211014533799734654667882001588889789397
Q 001842 778 EKMMNAETKSGSELKHLQYGFMGGYQFYQVTVTVTVKSVEILVRKVSNIFTSIDFSSNNFEGPIPEEMGRFKSLYALNLS 857 (1007)
Q Consensus 778 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LdLs~N~l~g~ip~~~~~L~~L~~L~Ls 857 (1007)
.....+..++.|++++|++++.+|..|+++++|+.|+|+
T Consensus 470 -----------------------------------------~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls 508 (606)
T 3t6q_A 470 -----------------------------------------NSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLS 508 (606)
T ss_dssp -----------------------------------------CGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECC
T ss_pred -----------------------------------------HHHCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECC
T ss_conf -----------------------------------------124048876688799996670686463265678889898
Q ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCC
Q ss_conf 8845324786865888888896878524100893375999878498127815115999
Q 001842 858 QNVLTGSIPSSFGNLEQIESLDLSMNNLSGKIPAPLANLNFLSVLNLSYNNLVGKIPT 915 (1007)
Q Consensus 858 ~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~l~ls~N~lsg~ip~ 915 (1007)
+|++++.+|..+.+++.| .|++++|++++.+|..+..+++|+.+++++|++.+.++.
T Consensus 509 ~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~ 565 (606)
T 3t6q_A 509 HNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCSN 565 (606)
T ss_dssp SSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGGG
T ss_pred CCCCCCCCHHHHCCCCCC-EEECCCCCCCCCCHHHCCCCCCCCEEECCCCCCCCCCCC
T ss_conf 980686896684756651-898768941426876625677878896779986166775
No 7
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=1.00 E-value=1 Score=429.60 Aligned_cols=294 Identities=19% Similarity=0.193 Sum_probs=161.8
Q ss_pred CCCEEEECCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCHHHCCCCCCCEEE
Q ss_conf 97737701776867893200268783699813673235677112488988789864884544589102103868634488
Q 001842 582 NTSYMDYSNNNFTTIPADIGNFMSGTIFFSAANNSLTGVIPQSVCNATYFSVLDLSNNSLSGTIPTCLITNSSRTLGVLN 661 (1007)
Q Consensus 582 ~L~~L~ls~n~l~~i~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~ls~N~l~~~~p~~~~~~~~~~L~~L~ 661 (1007)
+++.|++++|.+..++...+..++.++.+++++|.+++..|..+..+++|++|++++|.+.+..+..+..+. +|+.|+
T Consensus 267 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~--~L~~L~ 344 (844)
T 3j0a_A 267 SVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLP--KVAYID 344 (844)
T ss_dssp CCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCT--TCCEEE
T ss_pred CCCEEECCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHHCCCC--CCCEEE
T ss_conf 861898979945515863452589999998979818987968836888999898989978851878846899--999898
Q ss_pred CCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCHHHHHCCCCCCEEECCCCCCCC
Q ss_conf 35875764358885877776689556871221255013378999599698985775530655359999689778862764
Q 001842 662 LRGNSLNGTLSDRVPGICGLQILDLNGNQLEGMVPKSLANCKMLQVLDLGNNNFSKKFPCWLKNASSLQVLVLRSNNFSG 741 (1007)
Q Consensus 662 Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~ 741 (1007)
+++|.+++..+..|.++++|+.|++++|.+++. ..+++|+.|++++|+++.. |.. ..+++.|++++|++++
T Consensus 345 L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i-----~~~~~L~~L~l~~N~l~~l-~~~---~~~l~~L~ls~N~l~~ 415 (844)
T 3j0a_A 345 LQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTI-----HFIPSIPDIFLSGNKLVTL-PKI---NLTANLIHLSENRLEN 415 (844)
T ss_dssp CCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCC-----SSCCSCSEEEEESCCCCCC-CCC---CTTCCEEECCSCCCCS
T ss_pred CCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCC-----CCCCCCCHHCCCCCCCCCC-CCC---CCCCCEEECCCCCCCC
T ss_conf 989987762866613788899988989977861-----6889823200589972314-554---5543122145675345
Q ss_pred CCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEEEEEEECCEEEEEE
Q ss_conf 46899988899987699777884856586688975998542001356532221124347500233599998612012211
Q 001842 742 NISCPRNNVSWPLLQIIDLASNKFSGRLSKKWLLTLEKMMNAETKSGSELKHLQYGFMGGYQFYQVTVTVTVKSVEILVR 821 (1007)
Q Consensus 742 ~~~~p~~~~~l~~L~~LdLs~N~l~g~~p~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 821 (1007)
... +..+..+++|+.|++++|++++..+...+
T Consensus 416 l~~-~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~----------------------------------------------- 447 (844)
T 3j0a_A 416 LDI-LYFLLRVPHLQILILNQNRFSSCSGDQTP----------------------------------------------- 447 (844)
T ss_dssp STT-HHHHTTCTTCCEEEEESCCCCCCCSSSSS-----------------------------------------------
T ss_pred CCH-HHHHHCCCCCCEEECCCCCCCCCCCCCCC-----------------------------------------------
T ss_conf 755-66651277666666778712555543335-----------------------------------------------
Q ss_pred CCCCCEEEEECCCCCCC-----CCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCC
Q ss_conf 01453379973465466-----7882001588889789397884532478686588888889687852410089337599
Q 001842 822 KVSNIFTSIDFSSNNFE-----GPIPEEMGRFKSLYALNLSQNVLTGSIPSSFGNLEQIESLDLSMNNLSGKIPAPLANL 896 (1007)
Q Consensus 822 ~~~~~l~~LdLs~N~l~-----g~ip~~~~~L~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~l~~l 896 (1007)
.....++.|+|++|.++ +..|..|.++++|+.|+|++|++++.+|..|+++++|+.|+|++|++++..|..+.
T Consensus 448 ~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~-- 525 (844)
T 3j0a_A 448 SENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP-- 525 (844)
T ss_dssp CSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHCCCHHHHHEEECCCCCCCCCCHHHHH--
T ss_conf 668731002477773644101355355544755365777889856553955704501221569999978745710110--
Q ss_pred CCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 987849812781511599998777547876667999989999
Q 001842 897 NFLSVLNLSYNNLVGKIPTSTQLQSFSPTSYEGNKGLYGPPL 938 (1007)
Q Consensus 897 ~~L~~l~ls~N~lsg~ip~~~~~~~~~~~~~~gn~~lcg~~~ 938 (1007)
++|+.|++++|+++|.+|.. +..+....+.|||..|.+++
T Consensus 526 ~~L~~L~Ls~N~l~~~~~~~--~~~L~~l~l~~Np~~C~c~~ 565 (844)
T 3j0a_A 526 ANLEILDISRNQLLAPNPDV--FVSLSVLDITHNKFICECEL 565 (844)
T ss_dssp SCCCEEEEEEECCCCCCSCC--CSSCCEEEEEEECCCCSSSC
T ss_pred CCCCEEECCCCCCCCCCHHH--HCCCCEEEECCCCCCCCCCC
T ss_conf 04558889888478889668--37768899319970253661
No 8
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=1.00 E-value=1 Score=428.94 Aligned_cols=532 Identities=23% Similarity=0.207 Sum_probs=236.4
Q ss_pred CCCEEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCHHHHHCCCC
Q ss_conf 77833279999999987800359999998858999997568712228899989957999999975322352677620477
Q 001842 108 YLRSLNLGFTLFSGIQIPSRLANLTNLTYLNLSQSGFIQDIPIEISSLTRLVTLDLSAEPSGGFSFLEISNLSLFLQNLT 187 (1007)
Q Consensus 108 ~L~~L~Ls~n~~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~~~~l~~l~ 187 (1007)
.+++|++++|.+++. .|..++++++|++|++++|.+.+..|..++++++|++|++++|..... .+..+.+++
T Consensus 34 ~l~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~-------~~~~~~~l~ 105 (606)
T 3t6q_A 34 STECLEFSFNVLPTI-QNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFM-------AETALSGPK 105 (606)
T ss_dssp TCCEEECTTCCCSEE-CTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEE-------CTTTTSSCT
T ss_pred CCCEEECCCCCCCCC-CHHHHCCCCCCEEEECCCCCCCEECHHHCCCCCCCCEEECCCCCCCCC-------CHHHHCCCC
T ss_conf 675898158734717-966725676652897889835524851136843367644889856545-------865523442
Q ss_pred CCCEEECCCCCCCCCCCHHHHHHCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCCHHHHCCCCCCCE
Q ss_conf 77546558723667661266750899998699723767999650210189999989789998999882043209999879
Q 001842 188 ELRELHLDNVDLFASGTDWCKALSFLPNLQVLSLSRCELSGPINQYLANLRSLSAIRLPNNYGLSSPVPEFLANFSHLTA 267 (1007)
Q Consensus 188 ~L~~L~L~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~l~~l~~L~~ 267 (1007)
+|++|++ ++|.+++..+..+..+++|++|++++| .+.+.....+..+++|++
T Consensus 106 ~L~~L~L---------------------------~~n~i~~l~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~ 157 (606)
T 3t6q_A 106 ALKHLFF---------------------------IQTGISSIDFIPLHNQKTLESLYLGSN-HISSIKLPKGFPTEKLKV 157 (606)
T ss_dssp TCCEEEC---------------------------TTSCCSCGGGSCCTTCTTCCEEECCSS-CCCCCCCCTTCCCTTCCE
T ss_pred CCCEEEC---------------------------CCCCCCCCCCCHHCCCCCCCEEECCCC-CCCCCCCCCCCCCCCCCE
T ss_conf 1537652---------------------------126766578101223782238988798-341147654568765687
Q ss_pred EECCCCCCCCCCCHHCCCCCCCC--EEECCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCEEECCCC
Q ss_conf 95469858766552104999989--9918999999888999999998869990177785454301128999989973487
Q 001842 268 LDLGDCQLQGKFPEKILQVPTLE--TLDLSDNPSLQGSLPHFPKNSSLRNLILFGTGFSGTLPNSIGNLENLANVDISSC 345 (1007)
Q Consensus 268 L~L~~n~l~~~~~~~l~~l~~L~--~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n 345 (1007)
|++++|.+.+..+..+..+++|+ .|++++|.+.... +.......|+.+++++|. .++..+..+..+....+...
T Consensus 158 L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~-~~~~~~~~L~~L~l~~~~---~~~~~~~~l~~~~l~~l~~~ 233 (606)
T 3t6q_A 158 LDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIE-PGAFDSAVFQSLNFGGTQ---NLLVIFKGLKNSTIQSLWLG 233 (606)
T ss_dssp EECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEEC-TTTTTTCEEEEEECTTCS---CHHHHHHHTTTCEEEEEECC
T ss_pred EECCCCCCCCCCHHHHHHHCCCCEEEEECCCCCCCCCC-HHHHHHCCCCCCCCCCCH---HHHHHHHHCCCCCHHHEECH
T ss_conf 77656844554965633221564038966798147548-667300100135567726---67777651335644220020
Q ss_pred CCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCC
Q ss_conf 58788830012878876877014754477897567888788986468787856875633688867898557757876671
Q 001842 346 NFTGPIPTSMANLTRLFHLDFSSNHFSGPIPSLGLSRNLSYLDLSSNDLTGRILFTPWEQLLNIKYVHLNYNSLSGSIPR 425 (1007)
Q Consensus 346 ~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~ 425 (1007)
.+.. +....+....+.+ ....+|+.+++++|.+. .++...+..+++|++|++++|.++ .+|.
T Consensus 234 ~~~~-----------~~~~~i~~~~~~~-----l~~~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~-~lp~ 295 (606)
T 3t6q_A 234 TFED-----------MDDEDISPAVFEG-----LCEMSVESINLQKHYFF-NISSNTFHCFSGLQELDLTATHLS-ELPS 295 (606)
T ss_dssp CCTT-----------SCCCCCCGGGGGG-----GGGSEEEEEECTTCCCS-SCCTTTTTTCTTCSEEECTTSCCS-CCCS
T ss_pred HHCC-----------CCCCCCCHHHHCH-----HHCCCEEEEEEECCCCC-CCCHHHHCCCCCCCEEECCCCCCC-CCCH
T ss_conf 1102-----------6412268667430-----32075059994457658-557777445667888956288267-7782
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCCCCCCCCC
Q ss_conf 13377764401067774666685433237687668973388788977802120489986898888766642225789989
Q 001842 426 SLFLLPTLEMLLLSTNQFENQLPEFSNESSSVMNFLDLSGNRLEGPIPISIFFELRNLLTLDLSSNKFSRLKLASSKPRG 505 (1007)
Q Consensus 426 ~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~ls~n~l~~~i~~~~f~~l~~L~~L~ls~n~l~~l~~~~~~~~~ 505 (1007)
.+..+++|++|++++|.+.+..+. .....++|+.|++++|.+.+.++...+..+++|+.|++++|.+.....
T Consensus 296 ~l~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~------- 367 (606)
T 3t6q_A 296 GLVGLSTLKKLVLSANKFENLCQI-SASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDC------- 367 (606)
T ss_dssp SCCSCTTCCEEECTTCCCSBGGGG-CGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEE-------
T ss_pred HHCCCCCCCEEECCCCCCCCCCHH-HHHCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCC-------
T ss_conf 141654688897716876867602-330157689888989974443462455066758988788996664567-------
Q ss_pred CCC-CCCCCCCCEEECCCCCCCCCHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCC
Q ss_conf 999-7879986699767983435311567620466429854577533877310014677675114545355799999977
Q 001842 506 TPN-LNKQSKLSSLDLSDNQISGEIPNWIWEFSANLVFLNLSHNLLESLQEPYFIAGVGLLDLHSNELQGSIPYMSPNTS 584 (1007)
Q Consensus 506 ~p~-l~~~~~L~~L~Ls~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~L~ 584 (1007)
.+. +..+++|+.|++++|.+.+..|
T Consensus 368 ~~~~~~~l~~L~~L~l~~n~l~~~~~------------------------------------------------------ 393 (606)
T 3t6q_A 368 CNLQLRNLSHLQSLNLSYNEPLSLKT------------------------------------------------------ 393 (606)
T ss_dssp STTTTTTCTTCCEEECCSCSCEEECT------------------------------------------------------
T ss_pred CCHHCCCCCCCCEEECCCCCCCCCCH------------------------------------------------------
T ss_conf 52210567888989898996775788------------------------------------------------------
Q ss_pred EEEECCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCC-CCCCCCCCCEEECCCCCCCCCCCCCHHHCCCCCCCEEECC
Q ss_conf 377017768678932002687836998136732356771-1248898878986488454458910210386863448835
Q 001842 585 YMDYSNNNFTTIPADIGNFMSGTIFFSAANNSLTGVIPQ-SVCNATYFSVLDLSNNSLSGTIPTCLITNSSRTLGVLNLR 663 (1007)
Q Consensus 585 ~L~ls~n~l~~i~~~~~~~~~~L~~L~l~~n~l~~~~p~-~~~~~~~L~~L~ls~N~l~~~~p~~~~~~~~~~L~~L~Ls 663 (1007)
..+..+++++.+++++|.+.+..+. .+..+++|+.|++++|.+.+..+..+..+. +|+.|+++
T Consensus 394 --------------~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~--~L~~L~L~ 457 (606)
T 3t6q_A 394 --------------EAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLP--ALQHLNLQ 457 (606)
T ss_dssp --------------TTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCT--TCCEEECT
T ss_pred --------------HHHCCCCCCCEEECCCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCHHHHHCCC--CCCEEECC
T ss_conf --------------87347745776878888677756521241765588898989855776877873788--78889898
Q ss_pred CCCCCCC---CCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCHHHHHCCCCCCEEECCCCCCC
Q ss_conf 8757643---5888587777668955687122125501337899959969898577553065535999968977886276
Q 001842 664 GNSLNGT---LSDRVPGICGLQILDLNGNQLEGMVPKSLANCKMLQVLDLGNNNFSKKFPCWLKNASSLQVLVLRSNNFS 740 (1007)
Q Consensus 664 ~N~l~~~---~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~ 740 (1007)
+|.+++. .+..+..+++|+.|++++|++++..|..|..+++|+.|++++|++++..|.++.++++| .|++++|+++
T Consensus 458 ~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~ 536 (606)
T 3t6q_A 458 GNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHIS 536 (606)
T ss_dssp TCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCC
T ss_pred CCCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHHCCCCCC-EEECCCCCCC
T ss_conf 998885434543124048876688799996670686463265678889898980686896684756651-8987689414
Q ss_pred CCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHHHH
Q ss_conf 44689998889998769977788485658668897599
Q 001842 741 GNISCPRNNVSWPLLQIIDLASNKFSGRLSKKWLLTLE 778 (1007)
Q Consensus 741 ~~~~~p~~~~~l~~L~~LdLs~N~l~g~~p~~~~~~l~ 778 (1007)
+.+ |..+..+++|+.+++++|++.|.++..++..|-
T Consensus 537 ~~~--~~~~~~l~~L~~L~l~~N~~~c~c~~~~~~~w~ 572 (606)
T 3t6q_A 537 IIL--PSLLPILSQQRTINLRQNPLDCTCSNIYFLEWY 572 (606)
T ss_dssp CCC--GGGHHHHHTSSEEECTTCCEECSGGGHHHHHHH
T ss_pred CCC--HHHCCCCCCCCEEECCCCCCCCCCCCHHHHHHH
T ss_conf 268--766256778788967799861667757899999
No 9
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=1.00 E-value=1 Score=424.69 Aligned_cols=213 Identities=24% Similarity=0.238 Sum_probs=143.0
Q ss_pred CCCCCCCCEEECCCCCCCCC--CCCCHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCC-CCCCC
Q ss_conf 24889887898648845445--8910210386863448835875764358885877776689556871221255-01337
Q 001842 625 VCNATYFSVLDLSNNSLSGT--IPTCLITNSSRTLGVLNLRGNSLNGTLSDRVPGICGLQILDLNGNQLEGMVP-KSLAN 701 (1007)
Q Consensus 625 ~~~~~~L~~L~ls~N~l~~~--~p~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p-~~~~~ 701 (1007)
+..+++|++|++++|.+++. ++..+..+. +|+.|++++|.+++ .|..+..+++|+.|++++|++.+..| ..+..
T Consensus 346 ~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~--~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~ 422 (606)
T 3vq2_A 346 KVALPSLSYLDLSRNALSFSGCCSYSDLGTN--SLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLS 422 (606)
T ss_dssp CCCCTTCCEEECCSSCEEEEEECCHHHHCCS--CCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTT
T ss_pred HCCCCCCCEEECCCCCCCCCCCHHHHHCCCC--CCCEEECCCCCCCC-CHHHCCCCCCCCEEECCCCCCCCCCCHHHHHC
T ss_conf 0248988879775873687752012214677--55486788995300-05540688888965898870587537645646
Q ss_pred CCCCCEEECCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCC-CCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHHHHHH
Q ss_conf 89995996989857755306553599996897788627644-68999888999876997778848565866889759985
Q 001842 702 CKMLQVLDLGNNNFSKKFPCWLKNASSLQVLVLRSNNFSGN-ISCPRNNVSWPLLQIIDLASNKFSGRLSKKWLLTLEKM 780 (1007)
Q Consensus 702 l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~-~~~p~~~~~l~~L~~LdLs~N~l~g~~p~~~~~~l~~~ 780 (1007)
+++|+.|++++|++++..|..+.++++|+.|++++|++.+. + |..+..+++
T Consensus 423 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~~~~~l~~-------------------------- 474 (606)
T 3vq2_A 423 LEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTL--SNVFANTTN-------------------------- 474 (606)
T ss_dssp CTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEE--CSCCTTCTT--------------------------
T ss_pred CCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCH--HHHHCCCCC--------------------------
T ss_conf 2137889896897874335553477878989898983798546--776045788--------------------------
Q ss_pred HHHCCCCCCCCCCCCCCCCCCCEEEEEEEEEEECCEEEEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEECCCCC
Q ss_conf 42001356532221124347500233599998612012211014533799734654667882001588889789397884
Q 001842 781 MNAETKSGSELKHLQYGFMGGYQFYQVTVTVTVKSVEILVRKVSNIFTSIDFSSNNFEGPIPEEMGRFKSLYALNLSQNV 860 (1007)
Q Consensus 781 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LdLs~N~l~g~ip~~~~~L~~L~~L~Ls~N~ 860 (1007)
++.|++++|++++.+|..++++++|+.|++++|+
T Consensus 475 ----------------------------------------------L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~ 508 (606)
T 3vq2_A 475 ----------------------------------------------LTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNN 508 (606)
T ss_dssp ----------------------------------------------CCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred ----------------------------------------------CCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCC
T ss_conf ----------------------------------------------9989898885776486561546468989898995
Q ss_pred CCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCC-CCCEEECCCCCCCCCCCC
Q ss_conf 5324786865888888896878524100893375999-878498127815115999
Q 001842 861 LTGSIPSSFGNLEQIESLDLSMNNLSGKIPAPLANLN-FLSVLNLSYNNLVGKIPT 915 (1007)
Q Consensus 861 l~g~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~l~~l~-~L~~l~ls~N~lsg~ip~ 915 (1007)
+++.+|..|+++++|+.||+++|+++ .+|..+..++ +|+.+++++|++.+..+.
T Consensus 509 l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~~ 563 (606)
T 3vq2_A 509 LLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICEH 563 (606)
T ss_dssp CSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSSTT
T ss_pred CCCCCHHHCCCCCCCCEEECCCCCCC-CCCHHHHHHCCCCCEEECCCCCCCCCCCC
T ss_conf 78748777068876898889898376-66876752102174887628986647764
No 10
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=1.00 E-value=1 Score=423.27 Aligned_cols=543 Identities=20% Similarity=0.178 Sum_probs=296.8
Q ss_pred EEECCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECC
Q ss_conf 99599999533225888553688778332799999999878003599999988589999975687122288999899579
Q 001842 85 GLDLSREPIIGGLENATGLFSLQYLRSLNLGFTLFSGIQIPSRLANLTNLTYLNLSQSGFIQDIPIEISSLTRLVTLDLS 164 (1007)
Q Consensus 85 ~L~L~~~~l~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~lp~~l~~l~~L~~L~Ls 164 (1007)
.++.++.++.. + +..+. +++++|++++|.+.+. .+..+.++++|++|++++|.+.+..|..++++++|++|+++
T Consensus 15 ~~~c~~~~l~~-i--p~~~~--~~l~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls 88 (606)
T 3vq2_A 15 TYQCMDQKLSK-V--PDDIP--SSTKNIDLSFNPLKIL-KSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILT 88 (606)
T ss_dssp EEECTTSCCSS-C--CTTSC--TTCCEEECTTSCCCEE-CTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred CEECCCCCCCC-C--CCCCC--CCCCEEECCCCCCCEE-CHHHCCCCCCCCEEECCCCCCCCCCHHHHHCHHHCCEEECC
T ss_conf 05746888451-8--98888--8767887888975773-75455577667488688773664397773060106886787
Q ss_pred CCCCCCCCCCCCCCHHHHHCCCCCCCEEECCCCCCCCCCCHHHHHHCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEE
Q ss_conf 99999975322352677620477775465587236676612667508999986997237679996502101899999897
Q 001842 165 AEPSGGFSFLEISNLSLFLQNLTELRELHLDNVDLFASGTDWCKALSFLPNLQVLSLSRCELSGPINQYLANLRSLSAIR 244 (1007)
Q Consensus 165 ~n~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~ 244 (1007)
+|.+... .+.++..+++|++|++++|.+.+..+..++.+++|++|+
T Consensus 89 ~n~l~~~----------------------------------~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 134 (606)
T 3vq2_A 89 GNPIQSF----------------------------------SPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLN 134 (606)
T ss_dssp TCCCCCC----------------------------------CTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEE
T ss_pred CCCCCCC----------------------------------CHHHCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEE
T ss_conf 9856304----------------------------------852207865378887037755544511348988779896
Q ss_pred CCCCCCCCC-CCHHHHCCCCCCCEEECCCCCCCCCCCHHCCCCCCCC----EEECCCCCCCCCCCCCCCCCCCCCEEEEC
Q ss_conf 899989998-8204320999987995469858766552104999989----99189999998889999999988699901
Q 001842 245 LPNNYGLSS-PVPEFLANFSHLTALDLGDCQLQGKFPEKILQVPTLE----TLDLSDNPSLQGSLPHFPKNSSLRNLILF 319 (1007)
Q Consensus 245 L~~n~~~~~-~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~----~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~ 319 (1007)
+++| .+.+ .+|..++++++|++|++++|.+.+..+..+..+++|+ .|++++|.+.......+... +|+.|+++
T Consensus 135 L~~n-~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~-~L~~L~L~ 212 (606)
T 3vq2_A 135 VAHN-FIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGI-KLHELTLR 212 (606)
T ss_dssp CCSS-CCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEE
T ss_pred CCCC-CCCCEECHHHHHHCCCCCEEECCCCCCEECCHHHHHHHHCCCCCCCEEECCCCCCCEECCCCCCCC-EEEEEECC
T ss_conf 8788-523253068673267777887668853105733412120342002430046897532571105676-04335246
Q ss_pred CCCCC-CCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCEEEC-CCCCCCCC
Q ss_conf 77785-45430112899998997348758788830012878876877014754477897567888788986-46878785
Q 001842 320 GTGFS-GTLPNSIGNLENLANVDISSCNFTGPIPTSMANLTRLFHLDFSSNHFSGPIPSLGLSRNLSYLDL-SSNDLTGR 397 (1007)
Q Consensus 320 ~n~~~-~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L-~~n~l~~~ 397 (1007)
+|.+. ...+..+.+++.++.+++..+.+.... .+..+ ..........-.++.+++ ..+.+.+.
T Consensus 213 ~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~--------~l~~~-------~~~~~~~l~~l~l~~l~l~~~~~~~~~ 277 (606)
T 3vq2_A 213 GNFNSSNIMKTCLQNLAGLHVHRLILGEFKDER--------NLEIF-------EPSIMEGLCDVTIDEFRLTYTNDFSDD 277 (606)
T ss_dssp SCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSC--------CCSCC-------CGGGGTTGGGSEEEEEEECCCTTCCGG
T ss_pred CCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCC--------CCCCC-------CHHHHHHHHHCCHHHEECCCCCCCCCC
T ss_conf 785616677888602665652314111103677--------41026-------817766665434745012366555543
Q ss_pred CCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHH
Q ss_conf 68756336888678985577578766711337776440106777466668543323768766897338878897780212
Q 001842 398 ILFTPWEQLLNIKYVHLNYNSLSGSIPRSLFLLPTLEMLLLSTNQFENQLPEFSNESSSVMNFLDLSGNRLEGPIPISIF 477 (1007)
Q Consensus 398 i~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~ls~n~l~~~i~~~~f 477 (1007)
++. +..+++|+.+++++|.+. .++ .+..+++ |+.|++++|.+ +.+|. +
T Consensus 278 ~~~--~~~l~~L~~L~l~~~~~~-~l~-~l~~~~~-------------------------L~~L~l~~n~l-~~lp~-~- 325 (606)
T 3vq2_A 278 IVK--FHCLANVSAMSLAGVSIK-YLE-DVPKHFK-------------------------WQSLSIIRCQL-KQFPT-L- 325 (606)
T ss_dssp GGS--CGGGTTCSEEEEESCCCC-CCC-CCCTTCC-------------------------CSEEEEESCCC-SSCCC-C-
T ss_pred CCC--CCCCCCCCEEEECCCCCH-HHH-HCCCCCC-------------------------CCEEECCCCCC-CCCCC-C-
T ss_conf 222--354887898771476604-435-4334011-------------------------77897646667-65466-7-
Q ss_pred CCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCC--HHHHHHHCCCCCEEEECCCCCCCCCCC
Q ss_conf 048998689888876664222578998999978799866997679834353--115676204664298545775338773
Q 001842 478 FELRNLLTLDLSSNKFSRLKLASSKPRGTPNLNKQSKLSSLDLSDNQISGE--IPNWIWEFSANLVFLNLSHNLLESLQE 555 (1007)
Q Consensus 478 ~~l~~L~~L~ls~n~l~~l~~~~~~~~~~p~l~~~~~L~~L~Ls~n~l~~~--ip~~~~~~~~~L~~L~Ls~n~l~~~~~ 555 (1007)
.+++|+.|++++|+...- . .+..+++|+.|++++|.+++. ++..+. ..++|++|++++|.++.
T Consensus 326 -~l~~L~~L~l~~n~~~~~---------~-~~~~l~~L~~L~ls~n~l~~~~~~~~~~~-~~~~L~~L~L~~n~l~~--- 390 (606)
T 3vq2_A 326 -DLPFLKSLTLTMNKGSIS---------F-KKVALPSLSYLDLSRNALSFSGCCSYSDL-GTNSLRHLDLSFNGAII--- 390 (606)
T ss_dssp -CCSSCCEEEEESCSSCEE---------C-CCCCCTTCCEEECCSSCEEEEEECCHHHH-CCSCCCEEECCSCSEEE---
T ss_pred -CCCCCCEEECCCCCCCCC---------H-HHCCCCCCCEEECCCCCCCCCCCHHHHHC-CCCCCCEEECCCCCCCC---
T ss_conf -887556445447868531---------0-00248988879775873687752012214-67755486788995300---
Q ss_pred CCCCCCCCEEECCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCC-CCCCCCCCCCEE
Q ss_conf 1001467767511454535579999997737701776867893200268783699813673235677-112488988789
Q 001842 556 PYFIAGVGLLDLHSNELQGSIPYMSPNTSYMDYSNNNFTTIPADIGNFMSGTIFFSAANNSLTGVIP-QSVCNATYFSVL 634 (1007)
Q Consensus 556 ~~~~~~L~~L~L~~n~l~~~~~~~~~~L~~L~ls~n~l~~i~~~~~~~~~~L~~L~l~~n~l~~~~p-~~~~~~~~L~~L 634 (1007)
+| ..+..+++++.+++++|.+.+..| ..+..+++|+.|
T Consensus 391 ----------------------------------------~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L 429 (606)
T 3vq2_A 391 ----------------------------------------MS-ANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYL 429 (606)
T ss_dssp ----------------------------------------EC-CCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEE
T ss_pred ----------------------------------------CH-HHCCCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCEE
T ss_conf ----------------------------------------05-5406888889658988705875376456462137889
Q ss_pred ECCCCCCCCCCCCCHHHCCCCCCCEEECCCCCCCC-CCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCC
Q ss_conf 86488454458910210386863448835875764-35888587777668955687122125501337899959969898
Q 001842 635 DLSNNSLSGTIPTCLITNSSRTLGVLNLRGNSLNG-TLSDRVPGICGLQILDLNGNQLEGMVPKSLANCKMLQVLDLGNN 713 (1007)
Q Consensus 635 ~ls~N~l~~~~p~~~~~~~~~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N 713 (1007)
++++|.+.+..|..+..+. +|+.|++++|.+++ ..|..+..+++|+.|++++|++++..|..|..+++|+.|++++|
T Consensus 430 ~l~~n~l~~~~~~~~~~l~--~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N 507 (606)
T 3vq2_A 430 DISYTNTKIDFDGIFLGLT--SLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHN 507 (606)
T ss_dssp ECTTSCCEECCTTTTTTCT--TCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred ECCCCCCCCCCHHHHCCCC--CCCEEECCCCCCCCCCHHHHHCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCC
T ss_conf 8968978743355534778--78989898983798546776045788998989888577648656154646898989899
Q ss_pred CCCCCCHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCC-CCCEEECCCCCCCCCCCHHHHHHH
Q ss_conf 5775530655359999689778862764468999888999-876997778848565866889759
Q 001842 714 NFSKKFPCWLKNASSLQVLVLRSNNFSGNISCPRNNVSWP-LLQIIDLASNKFSGRLSKKWLLTL 777 (1007)
Q Consensus 714 ~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~p~~~~~l~-~L~~LdLs~N~l~g~~p~~~~~~l 777 (1007)
++++..|..+.++++|+.|++++|+++.. |..+..++ +|+.+++++|++.|.++..|+..|
T Consensus 508 ~l~~~~~~~~~~l~~L~~L~l~~N~l~~~---p~~~~~l~~~L~~l~l~~N~~~c~c~~~~~~~~ 569 (606)
T 3vq2_A 508 NLLFLDSSHYNQLYSLSTLDCSFNRIETS---KGILQHFPKSLAFFNLTNNSVACICEHQKFLQW 569 (606)
T ss_dssp CCSCEEGGGTTTCTTCCEEECTTSCCCCE---ESCGGGSCTTCCEEECCSCCCCCSSTTHHHHTT
T ss_pred CCCCCCHHHCCCCCCCCEEECCCCCCCCC---CHHHHHHCCCCCEEECCCCCCCCCCCCHHHHHH
T ss_conf 57874877706887689888989837666---876752102174887628986647764899999
Done!