Query 001843
Match_columns 1007
No_of_seqs 677 out of 4553
Neff 8.8
Searched_HMMs 46136
Date Fri Mar 29 10:38:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001843.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001843hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 6.1E-86 1.3E-90 801.1 33.7 806 3-957 1-866 (889)
2 PLN03210 Resistant to P. syrin 100.0 2.2E-60 4.8E-65 610.4 47.8 665 186-975 179-905 (1153)
3 PF00931 NB-ARC: NB-ARC domain 100.0 8E-42 1.7E-46 377.2 17.4 250 274-533 20-282 (287)
4 PLN00113 leucine-rich repeat r 99.9 4E-24 8.6E-29 275.6 16.4 337 613-974 118-486 (968)
5 PLN00113 leucine-rich repeat r 99.9 1.7E-23 3.6E-28 269.8 18.2 339 614-974 70-439 (968)
6 KOG0444 Cytoskeletal regulator 99.9 2.9E-26 6.2E-31 251.3 -7.0 340 611-977 30-376 (1255)
7 KOG0444 Cytoskeletal regulator 99.9 3.1E-24 6.6E-29 235.5 -6.3 318 613-956 55-379 (1255)
8 KOG4194 Membrane glycoprotein 99.8 2E-22 4.4E-27 220.7 1.2 347 612-985 101-465 (873)
9 KOG4194 Membrane glycoprotein 99.8 1.8E-21 3.9E-26 213.4 4.5 323 634-987 77-435 (873)
10 PLN03210 Resistant to P. syrin 99.8 6.1E-18 1.3E-22 218.6 19.6 266 666-953 631-907 (1153)
11 KOG0472 Leucine-rich repeat pr 99.7 3.4E-19 7.4E-24 187.9 -6.4 289 667-975 135-540 (565)
12 KOG0472 Leucine-rich repeat pr 99.6 6.7E-19 1.5E-23 185.7 -10.9 217 632-878 65-309 (565)
13 KOG0618 Serine/threonine phosp 99.6 3.2E-17 7E-22 189.9 -7.1 105 866-976 359-489 (1081)
14 PRK15387 E3 ubiquitin-protein 99.5 3.8E-14 8.2E-19 170.5 14.6 252 670-974 202-456 (788)
15 KOG0618 Serine/threonine phosp 99.4 8.6E-15 1.9E-19 170.1 -2.9 260 613-924 219-485 (1081)
16 PRK15387 E3 ubiquitin-protein 99.4 8.2E-13 1.8E-17 159.1 12.3 253 617-953 205-458 (788)
17 KOG0617 Ras suppressor protein 99.4 1.5E-14 3.4E-19 136.1 -3.8 150 632-800 30-184 (264)
18 PRK15370 E3 ubiquitin-protein 99.4 9.8E-13 2.1E-17 159.5 9.6 243 615-902 180-427 (754)
19 KOG4658 Apoptotic ATPase [Sign 99.3 1.2E-12 2.7E-17 161.0 8.0 310 630-973 518-856 (889)
20 PRK04841 transcriptional regul 99.3 1.1E-10 2.3E-15 150.3 26.2 281 272-589 31-333 (903)
21 PRK15370 E3 ubiquitin-protein 99.3 2.7E-12 5.8E-17 155.7 8.4 260 611-919 197-461 (754)
22 KOG0617 Ras suppressor protein 99.3 1.1E-13 2.4E-18 130.4 -3.4 160 658-832 25-187 (264)
23 PRK00411 cdc6 cell division co 99.2 1.6E-09 3.6E-14 125.2 25.4 293 274-577 56-374 (394)
24 cd00116 LRR_RI Leucine-rich re 99.1 1E-11 2.2E-16 139.4 -1.4 64 666-729 20-93 (319)
25 TIGR03015 pepcterm_ATPase puta 99.1 1.1E-08 2.3E-13 111.9 20.4 182 274-468 44-242 (269)
26 KOG4237 Extracellular matrix p 99.0 9.3E-12 2E-16 132.4 -4.5 248 636-902 68-358 (498)
27 KOG4237 Extracellular matrix p 99.0 2.8E-11 6.2E-16 128.7 -2.9 253 611-881 65-361 (498)
28 TIGR02928 orc1/cdc6 family rep 99.0 1.3E-07 2.9E-12 108.1 26.5 279 274-564 41-351 (365)
29 cd00116 LRR_RI Leucine-rich re 98.9 1.5E-10 3.3E-15 129.8 0.0 261 632-924 20-316 (319)
30 COG2909 MalT ATP-dependent tra 98.9 1.2E-07 2.6E-12 111.4 21.2 283 272-590 36-340 (894)
31 TIGR00635 ruvB Holliday juncti 98.9 4.3E-08 9.3E-13 109.1 17.0 245 274-564 31-290 (305)
32 PF01637 Arch_ATPase: Archaeal 98.9 7.6E-09 1.6E-13 110.2 10.3 177 274-463 21-233 (234)
33 PRK00080 ruvB Holliday junctio 98.8 4.6E-08 9.9E-13 109.7 13.4 246 274-564 52-311 (328)
34 COG2256 MGS1 ATPase related to 98.8 5.2E-08 1.1E-12 105.4 12.9 154 274-458 49-206 (436)
35 PF05729 NACHT: NACHT domain 98.8 5E-08 1.1E-12 97.9 12.0 144 274-429 1-163 (166)
36 KOG1259 Nischarin, modulator o 98.7 1.6E-09 3.5E-14 111.3 -0.3 130 785-926 280-410 (490)
37 KOG0532 Leucine-rich repeat (L 98.6 2.7E-09 5.9E-14 118.8 -2.6 171 634-831 74-247 (722)
38 PRK13342 recombination factor 98.6 4.3E-07 9.4E-12 105.0 14.0 158 274-465 37-197 (413)
39 COG3903 Predicted ATPase [Gene 98.6 1E-07 2.2E-12 104.1 7.6 282 274-589 15-315 (414)
40 PRK06893 DNA replication initi 98.6 2.9E-07 6.2E-12 97.5 10.9 151 274-464 40-203 (229)
41 KOG0532 Leucine-rich repeat (L 98.6 3.6E-09 7.7E-14 117.9 -4.2 194 667-876 73-270 (722)
42 PTZ00112 origin recognition co 98.6 3.4E-06 7.3E-11 100.1 19.9 282 274-564 782-1087(1164)
43 PF14580 LRR_9: Leucine-rich r 98.5 5.4E-08 1.2E-12 97.0 3.6 87 632-732 16-103 (175)
44 KOG3207 Beta-tubulin folding c 98.5 2.5E-08 5.4E-13 108.2 1.0 205 666-924 118-335 (505)
45 KOG2028 ATPase related to the 98.5 2E-06 4.4E-11 91.2 14.1 158 274-458 163-330 (554)
46 PF14580 LRR_9: Leucine-rich r 98.5 1.6E-07 3.5E-12 93.6 5.6 128 666-827 16-149 (175)
47 PRK07003 DNA polymerase III su 98.5 4.4E-06 9.5E-11 99.0 17.6 103 356-465 118-222 (830)
48 KOG3207 Beta-tubulin folding c 98.5 3.4E-08 7.3E-13 107.2 0.2 180 785-973 142-336 (505)
49 TIGR03420 DnaA_homol_Hda DnaA 98.4 2.2E-06 4.7E-11 91.0 12.7 153 274-465 39-202 (226)
50 PRK05564 DNA polymerase III su 98.4 4.9E-06 1.1E-10 92.7 15.6 159 274-464 27-190 (313)
51 PF13173 AAA_14: AAA domain 98.4 1.2E-06 2.6E-11 83.7 8.8 119 274-421 3-127 (128)
52 COG4886 Leucine-rich repeat (L 98.4 3.4E-07 7.4E-12 106.0 5.6 172 666-853 113-288 (394)
53 KOG2120 SCF ubiquitin ligase, 98.3 1.3E-08 2.8E-13 104.9 -6.5 132 761-898 207-346 (419)
54 PF13401 AAA_22: AAA domain; P 98.3 1.2E-06 2.5E-11 84.2 7.3 116 274-396 5-125 (131)
55 TIGR02903 spore_lon_C ATP-depe 98.3 7.4E-06 1.6E-10 98.8 15.4 186 274-467 176-398 (615)
56 COG4886 Leucine-rich repeat (L 98.3 6E-07 1.3E-11 103.9 5.8 190 672-903 96-290 (394)
57 PRK12402 replication factor C 98.3 9.8E-06 2.1E-10 91.7 15.4 100 356-462 124-224 (337)
58 PRK14961 DNA polymerase III su 98.3 1.6E-05 3.4E-10 90.3 16.3 98 356-460 118-216 (363)
59 PRK14949 DNA polymerase III su 98.3 1.3E-05 2.8E-10 97.0 16.0 103 355-464 117-221 (944)
60 PRK14963 DNA polymerase III su 98.3 3E-06 6.5E-11 99.3 10.3 178 274-468 37-222 (504)
61 PRK14960 DNA polymerase III su 98.2 1.5E-05 3.3E-10 93.6 15.0 99 356-461 117-216 (702)
62 PF13855 LRR_8: Leucine rich r 98.2 1.2E-06 2.5E-11 71.7 3.9 59 669-729 1-61 (61)
63 KOG1259 Nischarin, modulator o 98.2 3.4E-07 7.4E-12 94.5 0.9 111 782-903 300-412 (490)
64 PRK12323 DNA polymerase III su 98.2 1.3E-05 2.9E-10 93.8 13.9 103 355-464 122-225 (700)
65 PF05496 RuvB_N: Holliday junc 98.2 2.1E-05 4.6E-10 80.2 13.4 156 274-469 51-226 (233)
66 TIGR00678 holB DNA polymerase 98.2 3E-05 6.4E-10 79.6 14.6 91 356-459 95-186 (188)
67 PRK14957 DNA polymerase III su 98.2 2.1E-05 4.6E-10 92.3 15.1 162 274-466 39-223 (546)
68 COG3899 Predicted ATPase [Gene 98.2 3.2E-05 6.9E-10 96.6 17.4 289 274-585 25-383 (849)
69 PRK04195 replication factor C 98.2 7.3E-05 1.6E-09 88.4 19.6 157 274-463 40-201 (482)
70 PLN03025 replication factor C 98.2 1.7E-05 3.7E-10 88.6 13.3 159 274-458 35-194 (319)
71 PRK00440 rfc replication facto 98.2 2.6E-05 5.6E-10 87.5 14.8 160 274-460 39-199 (319)
72 cd00009 AAA The AAA+ (ATPases 98.2 1.5E-05 3.2E-10 77.7 11.4 106 274-398 20-131 (151)
73 PF13191 AAA_16: AAA ATPase do 98.2 4E-06 8.7E-11 85.7 7.3 23 274-296 25-47 (185)
74 PRK13341 recombination factor 98.2 9.8E-06 2.1E-10 98.6 11.7 153 274-458 53-211 (725)
75 PRK06645 DNA polymerase III su 98.2 2.7E-05 5.8E-10 90.9 14.9 98 355-460 126-225 (507)
76 PRK14962 DNA polymerase III su 98.1 3.3E-05 7.1E-10 89.9 15.6 120 356-482 116-239 (472)
77 cd01128 rho_factor Transcripti 98.1 3.7E-06 8.1E-11 89.2 7.0 93 274-367 17-113 (249)
78 PRK07940 DNA polymerase III su 98.1 4.1E-05 9E-10 86.9 15.5 97 356-464 116-213 (394)
79 PRK14956 DNA polymerase III su 98.1 2.8E-05 6E-10 89.0 13.5 174 274-459 41-217 (484)
80 PRK08691 DNA polymerase III su 98.1 3.5E-05 7.7E-10 91.4 14.1 99 356-461 118-217 (709)
81 PRK09376 rho transcription ter 98.1 9.7E-06 2.1E-10 89.5 8.5 87 274-367 170-266 (416)
82 PRK07994 DNA polymerase III su 98.1 3.9E-05 8.5E-10 91.5 14.2 102 355-463 117-219 (647)
83 PLN03150 hypothetical protein; 98.1 5.3E-06 1.1E-10 100.9 6.9 92 636-738 419-512 (623)
84 PRK14964 DNA polymerase III su 98.0 6E-05 1.3E-09 87.3 14.6 158 274-460 36-213 (491)
85 PRK08727 hypothetical protein; 98.0 5.4E-05 1.2E-09 80.3 12.8 149 274-461 42-201 (233)
86 KOG2120 SCF ubiquitin ligase, 98.0 2.4E-07 5.3E-12 95.7 -4.9 161 784-950 205-374 (419)
87 PRK14951 DNA polymerase III su 98.0 9E-05 2E-09 88.3 15.2 100 356-462 123-223 (618)
88 PF12799 LRR_4: Leucine Rich r 98.0 6.7E-06 1.4E-10 61.8 3.7 39 695-733 2-40 (44)
89 PRK07471 DNA polymerase III su 98.0 0.00017 3.7E-09 81.3 16.6 99 356-465 140-239 (365)
90 PRK09112 DNA polymerase III su 98.0 0.00011 2.3E-09 82.4 14.8 175 274-465 46-241 (351)
91 KOG4341 F-box protein containi 98.0 2.7E-07 6E-12 99.8 -5.6 80 669-751 138-227 (483)
92 PRK09087 hypothetical protein; 98.0 0.00018 3.9E-09 75.8 15.5 160 274-484 45-221 (226)
93 PRK08084 DNA replication initi 98.0 7.8E-05 1.7E-09 79.2 12.9 152 274-464 46-209 (235)
94 PRK05896 DNA polymerase III su 98.0 0.0001 2.2E-09 86.8 14.7 103 357-466 119-223 (605)
95 TIGR02397 dnaX_nterm DNA polym 97.9 0.00011 2.3E-09 83.9 14.5 103 356-465 116-219 (355)
96 PRK14958 DNA polymerase III su 97.9 9.4E-05 2E-09 87.1 14.0 159 274-461 39-217 (509)
97 TIGR01242 26Sp45 26S proteasom 97.9 3.8E-05 8.2E-10 87.5 9.9 153 274-459 157-329 (364)
98 KOG1909 Ran GTPase-activating 97.9 1.7E-06 3.7E-11 91.9 -1.2 194 666-880 27-255 (382)
99 PRK14955 DNA polymerase III su 97.9 0.00012 2.6E-09 84.2 13.4 102 356-464 126-229 (397)
100 PRK08903 DnaA regulatory inact 97.9 0.00018 3.9E-09 76.3 13.6 151 274-468 43-203 (227)
101 PRK07764 DNA polymerase III su 97.9 0.00021 4.6E-09 88.2 15.9 98 355-459 118-216 (824)
102 PRK14969 DNA polymerase III su 97.9 0.00019 4E-09 85.2 14.9 103 356-465 118-222 (527)
103 PF14516 AAA_35: AAA-like doma 97.9 0.002 4.3E-08 72.2 22.3 188 274-474 32-249 (331)
104 PHA02544 44 clamp loader, smal 97.9 0.00038 8.3E-09 77.9 16.7 127 274-427 44-171 (316)
105 PRK14970 DNA polymerase III su 97.9 0.00032 6.9E-09 80.2 16.3 156 274-459 40-204 (367)
106 PTZ00202 tuzin; Provisional 97.9 0.00012 2.5E-09 81.4 11.9 166 188-427 259-432 (550)
107 PRK14952 DNA polymerase III su 97.8 0.00022 4.8E-09 84.7 15.0 106 356-468 117-224 (584)
108 PRK14959 DNA polymerase III su 97.8 0.00027 5.8E-09 83.7 15.1 108 355-469 117-226 (624)
109 PRK09111 DNA polymerase III su 97.8 0.00038 8.2E-09 83.3 15.9 101 356-464 131-233 (598)
110 PF13855 LRR_8: Leucine rich r 97.8 2E-05 4.4E-10 64.3 3.4 60 635-706 1-61 (61)
111 KOG2982 Uncharacterized conser 97.8 8.8E-06 1.9E-10 84.4 1.5 177 788-974 70-260 (418)
112 PF12799 LRR_4: Leucine Rich r 97.8 2.7E-05 5.8E-10 58.5 3.7 40 669-710 1-40 (44)
113 PRK05642 DNA replication initi 97.8 0.0002 4.4E-09 76.0 11.8 152 274-464 46-208 (234)
114 PRK14950 DNA polymerase III su 97.7 0.00048 1E-08 83.2 16.1 102 356-464 119-221 (585)
115 COG1474 CDC6 Cdc6-related prot 97.7 0.00083 1.8E-08 75.7 16.9 267 275-564 44-335 (366)
116 PRK14087 dnaA chromosomal repl 97.7 0.00034 7.4E-09 81.4 14.0 168 274-467 142-322 (450)
117 TIGR00767 rho transcription te 97.7 8.7E-05 1.9E-09 82.6 8.6 91 274-367 169-265 (415)
118 PLN03150 hypothetical protein; 97.7 3.2E-05 6.9E-10 94.2 5.7 89 670-762 419-512 (623)
119 PRK07133 DNA polymerase III su 97.7 0.00067 1.5E-08 81.7 16.4 103 356-465 117-221 (725)
120 PRK06305 DNA polymerase III su 97.7 0.00059 1.3E-08 79.4 15.6 103 356-465 120-224 (451)
121 KOG0531 Protein phosphatase 1, 97.7 4.7E-06 1E-10 96.8 -1.7 77 666-745 92-170 (414)
122 KOG3665 ZYG-1-like serine/thre 97.7 1.3E-05 2.9E-10 97.1 1.7 157 669-850 122-283 (699)
123 PRK05707 DNA polymerase III su 97.7 0.00082 1.8E-08 74.7 15.6 98 356-464 105-203 (328)
124 PF00308 Bac_DnaA: Bacterial d 97.7 0.00032 7E-09 73.5 11.8 155 274-458 35-202 (219)
125 PRK14971 DNA polymerase III su 97.7 0.00053 1.1E-08 82.6 15.1 98 356-461 120-219 (614)
126 KOG4341 F-box protein containi 97.7 1.5E-06 3.2E-11 94.2 -5.9 302 635-977 138-468 (483)
127 KOG1909 Ran GTPase-activating 97.7 6.7E-06 1.5E-10 87.5 -1.3 247 632-902 27-310 (382)
128 KOG2543 Origin recognition com 97.6 0.00063 1.4E-08 73.7 13.2 145 274-428 31-192 (438)
129 PRK14954 DNA polymerase III su 97.6 0.00059 1.3E-08 81.8 14.4 102 356-464 126-229 (620)
130 PRK08451 DNA polymerase III su 97.6 0.0011 2.5E-08 77.6 16.3 102 356-464 116-218 (535)
131 KOG0989 Replication factor C, 97.6 0.00023 5E-09 74.9 9.3 162 274-457 58-223 (346)
132 KOG0531 Protein phosphatase 1, 97.6 1E-05 2.3E-10 93.9 -1.2 88 632-734 92-179 (414)
133 PRK14953 DNA polymerase III su 97.6 0.00095 2.1E-08 78.2 15.0 101 356-464 118-220 (486)
134 PRK14948 DNA polymerase III su 97.6 0.0013 2.9E-08 79.2 16.4 102 356-464 120-222 (620)
135 TIGR03345 VI_ClpV1 type VI sec 97.5 0.00058 1.3E-08 85.5 13.2 23 274-296 209-231 (852)
136 TIGR00362 DnaA chromosomal rep 97.5 0.0011 2.4E-08 76.9 14.6 156 274-459 137-305 (405)
137 PRK03992 proteasome-activating 97.5 0.00027 5.8E-09 81.0 9.2 134 273-431 165-317 (389)
138 PRK00149 dnaA chromosomal repl 97.5 0.0017 3.7E-08 76.2 15.7 178 274-484 149-348 (450)
139 PRK06647 DNA polymerase III su 97.5 0.0018 3.8E-08 77.3 15.8 100 355-461 117-217 (563)
140 PF05621 TniB: Bacterial TniB 97.5 0.0015 3.3E-08 70.0 13.5 175 274-462 62-259 (302)
141 KOG2982 Uncharacterized conser 97.5 1.9E-05 4.1E-10 82.0 -0.9 59 670-728 46-108 (418)
142 PRK14965 DNA polymerase III su 97.5 0.0011 2.4E-08 79.7 13.6 102 356-465 118-222 (576)
143 KOG1859 Leucine-rich repeat pr 97.4 3E-06 6.5E-11 97.4 -8.0 109 783-902 181-291 (1096)
144 PRK05563 DNA polymerase III su 97.4 0.0029 6.2E-08 75.8 16.5 99 355-460 117-216 (559)
145 TIGR02639 ClpA ATP-dependent C 97.4 0.00094 2E-08 83.0 12.7 132 275-429 205-358 (731)
146 PRK12422 chromosomal replicati 97.4 0.0011 2.3E-08 77.0 12.2 131 274-431 142-286 (445)
147 PRK08116 hypothetical protein; 97.4 0.00032 6.9E-09 75.9 7.4 104 274-397 115-221 (268)
148 TIGR02880 cbbX_cfxQ probable R 97.4 0.0023 5E-08 70.0 13.7 136 274-431 59-210 (284)
149 PRK07399 DNA polymerase III su 97.4 0.0038 8.3E-08 69.1 15.3 175 274-463 27-220 (314)
150 PRK14088 dnaA chromosomal repl 97.3 0.0013 2.8E-08 76.6 12.0 152 274-457 131-298 (440)
151 PRK15386 type III secretion pr 97.3 0.00052 1.1E-08 76.9 8.2 64 666-736 49-114 (426)
152 PRK11331 5-methylcytosine-spec 97.3 0.0007 1.5E-08 76.8 9.0 97 274-378 195-294 (459)
153 KOG2227 Pre-initiation complex 97.3 0.0059 1.3E-07 68.2 15.8 187 274-468 176-376 (529)
154 PTZ00454 26S protease regulato 97.3 0.0014 3.1E-08 74.8 11.2 133 273-430 179-330 (398)
155 CHL00181 cbbX CbbX; Provisiona 97.3 0.0041 9E-08 68.0 14.4 135 274-431 60-211 (287)
156 PF00004 AAA: ATPase family as 97.3 0.0012 2.6E-08 63.1 9.0 21 276-296 1-21 (132)
157 COG0593 DnaA ATPase involved i 97.2 0.0034 7.5E-08 70.6 13.3 135 273-433 113-261 (408)
158 PRK14086 dnaA chromosomal repl 97.2 0.003 6.5E-08 74.7 13.3 154 274-457 315-481 (617)
159 CHL00095 clpC Clp protease ATP 97.2 0.0014 3.1E-08 82.4 11.3 133 275-428 202-353 (821)
160 TIGR00763 lon ATP-dependent pr 97.2 0.01 2.2E-07 74.4 18.7 28 274-303 348-375 (775)
161 PRK06620 hypothetical protein; 97.2 0.002 4.4E-08 67.2 10.5 132 274-458 45-183 (214)
162 TIGR02881 spore_V_K stage V sp 97.2 0.0061 1.3E-07 66.0 14.7 135 274-431 43-193 (261)
163 PRK08769 DNA polymerase III su 97.2 0.0081 1.8E-07 66.3 15.6 97 356-465 112-209 (319)
164 PTZ00361 26 proteosome regulat 97.2 0.0013 2.9E-08 75.6 9.6 133 274-431 218-369 (438)
165 PRK15386 type III secretion pr 97.1 0.0021 4.6E-08 72.2 10.3 31 915-948 156-186 (426)
166 TIGR03346 chaperone_ClpB ATP-d 97.1 0.0033 7.2E-08 79.4 13.0 23 274-296 195-217 (852)
167 TIGR03689 pup_AAA proteasome A 97.1 0.0029 6.2E-08 73.9 11.4 140 274-430 217-379 (512)
168 KOG3665 ZYG-1-like serine/thre 97.1 0.00017 3.7E-09 87.7 1.4 106 611-728 120-231 (699)
169 smart00382 AAA ATPases associa 97.1 0.0023 5.1E-08 61.4 9.1 86 274-368 3-89 (148)
170 PRK10865 protein disaggregatio 97.0 0.0032 6.8E-08 79.3 11.9 23 274-296 200-222 (857)
171 PRK08058 DNA polymerase III su 97.0 0.0087 1.9E-07 67.0 14.2 72 356-428 109-181 (329)
172 CHL00176 ftsH cell division pr 97.0 0.0076 1.7E-07 72.9 14.4 152 274-457 217-387 (638)
173 PRK11034 clpA ATP-dependent Cl 97.0 0.0026 5.6E-08 78.3 10.5 133 275-429 209-362 (758)
174 PRK08181 transposase; Validate 97.0 0.0013 2.8E-08 70.8 7.1 102 274-398 107-210 (269)
175 PF05673 DUF815: Protein of un 97.0 0.025 5.5E-07 58.9 15.7 79 274-382 53-132 (249)
176 PRK12377 putative replication 97.0 0.0022 4.7E-08 68.2 8.0 101 274-396 102-205 (248)
177 COG3267 ExeA Type II secretory 97.0 0.021 4.5E-07 59.3 14.5 180 274-466 52-247 (269)
178 PRK07952 DNA replication prote 96.9 0.0018 3.9E-08 68.6 7.3 102 274-396 100-204 (244)
179 PRK10787 DNA-binding ATP-depen 96.9 0.0077 1.7E-07 74.8 13.7 138 274-429 350-506 (784)
180 KOG4579 Leucine-rich repeat (L 96.9 7.8E-05 1.7E-09 69.0 -2.9 72 666-739 50-122 (177)
181 KOG4579 Leucine-rich repeat (L 96.9 0.00012 2.6E-09 67.8 -1.8 91 633-735 51-141 (177)
182 PRK10536 hypothetical protein; 96.9 0.013 2.7E-07 61.9 12.7 119 274-398 75-214 (262)
183 PRK08118 topology modulation p 96.8 0.00063 1.4E-08 68.1 2.6 36 274-309 2-38 (167)
184 PF04665 Pox_A32: Poxvirus A32 96.8 0.0028 6.1E-08 66.4 7.2 35 274-310 14-48 (241)
185 PRK06871 DNA polymerase III su 96.8 0.031 6.7E-07 61.9 15.7 94 356-461 106-200 (325)
186 PF13177 DNA_pol3_delta2: DNA 96.8 0.01 2.2E-07 59.1 10.8 119 274-417 20-162 (162)
187 KOG0991 Replication factor C, 96.8 0.0076 1.6E-07 61.0 9.6 22 274-295 49-70 (333)
188 PF00448 SRP54: SRP54-type pro 96.8 0.0043 9.3E-08 63.7 8.1 91 273-366 1-92 (196)
189 TIGR01241 FtsH_fam ATP-depende 96.8 0.0057 1.2E-07 72.7 10.3 152 274-458 89-260 (495)
190 PF01695 IstB_IS21: IstB-like 96.7 0.0017 3.7E-08 65.6 4.6 100 274-397 48-150 (178)
191 COG1373 Predicted ATPase (AAA+ 96.7 0.029 6.3E-07 64.4 15.0 118 275-423 39-161 (398)
192 KOG1859 Leucine-rich repeat pr 96.7 4.6E-05 1E-09 87.9 -7.7 123 670-800 165-290 (1096)
193 PRK08939 primosomal protein Dn 96.7 0.006 1.3E-07 67.2 8.8 101 274-397 157-261 (306)
194 TIGR02902 spore_lonB ATP-depen 96.7 0.012 2.5E-07 70.3 11.9 22 274-295 87-108 (531)
195 PRK06835 DNA replication prote 96.6 0.0039 8.5E-08 69.2 7.2 37 274-312 184-220 (329)
196 PRK10865 protein disaggregatio 96.6 0.0099 2.1E-07 74.9 11.5 92 274-378 599-691 (857)
197 PRK07993 DNA polymerase III su 96.6 0.032 7E-07 62.3 14.3 95 356-462 107-202 (334)
198 PRK06921 hypothetical protein; 96.6 0.0073 1.6E-07 65.3 8.8 36 274-311 118-154 (266)
199 PF02562 PhoH: PhoH-like prote 96.6 0.006 1.3E-07 62.5 7.7 122 274-398 20-157 (205)
200 PRK06526 transposase; Provisio 96.6 0.003 6.4E-08 67.7 5.7 23 274-296 99-121 (254)
201 TIGR03345 VI_ClpV1 type VI sec 96.6 0.0053 1.1E-07 77.1 8.5 92 274-378 597-689 (852)
202 COG1222 RPT1 ATP-dependent 26S 96.5 0.065 1.4E-06 58.3 15.0 182 269-484 181-391 (406)
203 PRK09183 transposase/IS protei 96.5 0.0043 9.3E-08 66.8 6.4 23 274-296 103-125 (259)
204 PRK06090 DNA polymerase III su 96.5 0.065 1.4E-06 59.2 15.6 94 356-464 107-201 (319)
205 COG0466 Lon ATP-dependent Lon 96.5 0.045 9.7E-07 64.6 14.7 140 274-430 351-509 (782)
206 PRK06964 DNA polymerase III su 96.5 0.044 9.6E-07 61.1 14.3 94 356-464 131-225 (342)
207 PRK04132 replication factor C 96.5 0.031 6.8E-07 69.1 14.1 152 281-460 574-727 (846)
208 TIGR00602 rad24 checkpoint pro 96.5 0.013 2.8E-07 70.5 10.5 23 274-296 111-133 (637)
209 COG0470 HolB ATPase involved i 96.4 0.024 5.2E-07 63.6 12.1 124 274-421 25-173 (325)
210 TIGR02640 gas_vesic_GvpN gas v 96.4 0.039 8.5E-07 59.7 13.0 43 274-323 22-64 (262)
211 COG2255 RuvB Holliday junction 96.4 0.032 6.8E-07 58.7 11.4 66 390-462 155-221 (332)
212 PRK12608 transcription termina 96.4 0.016 3.4E-07 64.6 10.0 91 274-367 134-230 (380)
213 TIGR03346 chaperone_ClpB ATP-d 96.4 0.013 2.7E-07 74.3 10.1 92 274-378 596-688 (852)
214 TIGR02639 ClpA ATP-dependent C 96.3 0.013 2.8E-07 73.0 10.1 89 274-378 485-574 (731)
215 PRK13531 regulatory ATPase Rav 96.3 0.015 3.2E-07 66.9 9.3 22 274-295 40-61 (498)
216 TIGR01243 CDC48 AAA family ATP 96.3 0.019 4.2E-07 71.7 11.4 155 274-460 213-383 (733)
217 KOG0733 Nuclear AAA ATPase (VC 96.3 0.049 1.1E-06 62.8 13.3 75 268-367 218-292 (802)
218 cd01133 F1-ATPase_beta F1 ATP 96.3 0.011 2.5E-07 63.2 7.6 89 274-367 70-173 (274)
219 PRK07261 topology modulation p 96.3 0.011 2.4E-07 59.5 7.2 35 275-309 2-37 (171)
220 KOG1644 U2-associated snRNP A' 96.2 0.0052 1.1E-07 61.2 4.5 98 618-727 47-150 (233)
221 TIGR01243 CDC48 AAA family ATP 96.2 0.032 6.9E-07 69.8 12.7 152 274-458 488-657 (733)
222 KOG1514 Origin recognition com 96.2 0.15 3.3E-06 60.1 16.8 182 274-468 423-625 (767)
223 cd01123 Rad51_DMC1_radA Rad51_ 96.2 0.013 2.9E-07 62.4 7.8 91 274-367 20-125 (235)
224 TIGR02237 recomb_radB DNA repa 96.2 0.02 4.4E-07 59.7 9.0 45 274-323 13-57 (209)
225 PRK08699 DNA polymerase III su 96.1 0.051 1.1E-06 60.5 12.3 72 356-428 112-184 (325)
226 cd00983 recA RecA is a bacter 96.1 0.015 3.4E-07 63.9 7.8 85 274-367 56-143 (325)
227 TIGR02012 tigrfam_recA protein 96.1 0.016 3.5E-07 63.8 7.8 85 274-367 56-143 (321)
228 COG1484 DnaC DNA replication p 96.0 0.017 3.6E-07 62.0 7.7 37 274-312 106-142 (254)
229 CHL00095 clpC Clp protease ATP 96.0 0.018 3.9E-07 72.7 9.3 92 274-378 540-632 (821)
230 KOG0731 AAA+-type ATPase conta 96.0 0.083 1.8E-06 63.7 13.9 158 272-461 343-521 (774)
231 PF08423 Rad51: Rad51; InterP 96.0 0.025 5.4E-07 60.8 8.9 91 274-367 39-143 (256)
232 PRK09354 recA recombinase A; P 96.0 0.019 4.2E-07 63.7 8.2 85 274-367 61-148 (349)
233 COG0542 clpA ATP-binding subun 96.0 0.013 2.9E-07 70.8 7.2 95 271-378 519-614 (786)
234 COG2812 DnaX DNA polymerase II 96.0 0.018 3.8E-07 67.0 7.9 95 356-457 118-213 (515)
235 KOG1644 U2-associated snRNP A' 96.0 0.0096 2.1E-07 59.3 4.8 103 819-924 43-149 (233)
236 PRK11034 clpA ATP-dependent Cl 96.0 0.019 4.1E-07 70.8 8.6 89 274-378 489-578 (758)
237 PRK04296 thymidine kinase; Pro 95.9 0.015 3.2E-07 59.6 6.5 114 274-398 3-117 (190)
238 PF13207 AAA_17: AAA domain; P 95.9 0.006 1.3E-07 57.4 3.3 22 275-296 1-22 (121)
239 PLN00020 ribulose bisphosphate 95.9 0.015 3.3E-07 64.0 6.5 27 270-296 145-171 (413)
240 cd01393 recA_like RecA is a b 95.9 0.047 1E-06 57.7 10.3 89 274-367 20-124 (226)
241 PRK09361 radB DNA repair and r 95.8 0.017 3.6E-07 61.1 6.5 37 274-312 24-60 (225)
242 KOG0741 AAA+-type ATPase [Post 95.8 0.072 1.6E-06 60.4 11.3 159 272-468 537-716 (744)
243 PHA00729 NTP-binding motif con 95.8 0.028 6.1E-07 58.3 7.6 24 273-296 17-40 (226)
244 PF14532 Sigma54_activ_2: Sigm 95.8 0.0094 2E-07 57.6 3.9 88 274-398 22-111 (138)
245 COG5238 RNA1 Ran GTPase-activa 95.8 0.0027 5.8E-08 65.7 0.1 79 667-745 28-128 (388)
246 CHL00195 ycf46 Ycf46; Provisio 95.7 0.045 9.7E-07 64.2 10.1 134 272-431 258-407 (489)
247 KOG0735 AAA+-type ATPase [Post 95.7 0.11 2.3E-06 61.2 12.7 73 274-367 432-504 (952)
248 PF10443 RNA12: RNA12 protein; 95.7 0.34 7.4E-06 54.7 16.4 199 358-575 149-379 (431)
249 PRK11889 flhF flagellar biosyn 95.7 0.039 8.4E-07 61.7 8.9 87 273-367 241-330 (436)
250 PRK00771 signal recognition pa 95.6 0.041 9E-07 63.4 9.2 91 272-366 94-184 (437)
251 cd01394 radB RadB. The archaea 95.6 0.057 1.2E-06 56.7 9.6 37 274-312 20-56 (218)
252 PRK14974 cell division protein 95.6 0.058 1.2E-06 60.0 9.9 100 273-378 140-245 (336)
253 PRK10867 signal recognition pa 95.6 0.04 8.6E-07 63.4 8.8 38 272-311 99-137 (433)
254 TIGR01425 SRP54_euk signal rec 95.6 0.038 8.2E-07 63.2 8.4 37 273-311 100-136 (429)
255 PRK05541 adenylylsulfate kinas 95.5 0.034 7.4E-07 56.3 7.3 35 274-310 8-42 (176)
256 cd03115 SRP The signal recogni 95.5 0.038 8.3E-07 55.7 7.3 90 275-367 2-92 (173)
257 KOG1947 Leucine rich repeat pr 95.4 0.0016 3.5E-08 77.4 -3.6 38 666-703 185-223 (482)
258 PF07728 AAA_5: AAA domain (dy 95.3 0.0094 2E-07 57.7 2.2 85 276-378 2-86 (139)
259 smart00763 AAA_PrkA PrkA AAA d 95.3 0.016 3.5E-07 64.2 4.3 23 274-296 79-101 (361)
260 TIGR00959 ffh signal recogniti 95.3 0.055 1.2E-06 62.2 8.7 91 272-367 98-192 (428)
261 PRK06067 flagellar accessory p 95.3 0.1 2.2E-06 55.5 10.2 87 274-367 26-130 (234)
262 PF13604 AAA_30: AAA domain; P 95.2 0.038 8.3E-07 56.9 6.4 106 274-397 19-131 (196)
263 KOG0744 AAA+-type ATPase [Post 95.2 0.047 1E-06 58.2 6.9 79 274-367 178-260 (423)
264 PF07693 KAP_NTPase: KAP famil 95.2 0.32 6.9E-06 54.6 14.4 27 274-302 21-47 (325)
265 PLN03187 meiotic recombination 95.2 0.067 1.4E-06 59.7 8.5 57 274-333 127-187 (344)
266 PRK07132 DNA polymerase III su 95.1 0.5 1.1E-05 51.8 15.1 157 274-464 19-185 (299)
267 TIGR02238 recomb_DMC1 meiotic 95.1 0.075 1.6E-06 58.8 8.8 56 274-332 97-156 (313)
268 TIGR00064 ftsY signal recognit 95.1 0.098 2.1E-06 56.7 9.6 90 273-367 72-164 (272)
269 cd01131 PilT Pilus retraction 95.1 0.032 6.8E-07 57.7 5.6 107 274-398 2-110 (198)
270 PRK08233 hypothetical protein; 95.1 0.055 1.2E-06 54.9 7.3 22 274-295 4-25 (182)
271 PF00560 LRR_1: Leucine Rich R 95.1 0.0087 1.9E-07 37.5 0.8 17 696-712 2-18 (22)
272 cd00561 CobA_CobO_BtuR ATP:cor 95.1 0.13 2.8E-06 50.6 9.3 122 274-398 3-139 (159)
273 TIGR03499 FlhF flagellar biosy 95.1 0.092 2E-06 57.4 9.3 85 274-366 195-281 (282)
274 PRK05022 anaerobic nitric oxid 95.1 0.26 5.5E-06 58.9 13.7 23 274-296 211-233 (509)
275 TIGR02239 recomb_RAD51 DNA rep 95.0 0.13 2.8E-06 57.1 10.4 56 274-332 97-156 (316)
276 cd01120 RecA-like_NTPases RecA 95.0 0.093 2E-06 51.8 8.6 36 275-312 1-36 (165)
277 PRK15429 formate hydrogenlyase 95.0 0.15 3.3E-06 63.3 12.1 23 274-296 400-422 (686)
278 KOG1969 DNA replication checkp 95.0 0.073 1.6E-06 62.8 8.4 73 270-367 323-397 (877)
279 KOG0733 Nuclear AAA ATPase (VC 95.0 0.26 5.6E-06 57.2 12.5 134 272-431 544-694 (802)
280 cd03214 ABC_Iron-Siderophores_ 94.9 0.11 2.4E-06 52.7 8.9 122 274-398 26-159 (180)
281 KOG0728 26S proteasome regulat 94.9 0.84 1.8E-05 47.0 14.6 164 273-468 181-367 (404)
282 PRK06696 uridine kinase; Valid 94.9 0.04 8.6E-07 58.1 5.6 22 274-295 23-44 (223)
283 PF00485 PRK: Phosphoribulokin 94.9 0.1 2.3E-06 53.6 8.6 82 275-361 1-87 (194)
284 COG1102 Cmk Cytidylate kinase 94.9 0.053 1.1E-06 52.3 5.7 44 275-333 2-45 (179)
285 PRK12723 flagellar biosynthesi 94.8 0.092 2E-06 59.6 8.7 87 273-367 174-264 (388)
286 PF00154 RecA: recA bacterial 94.8 0.087 1.9E-06 57.9 8.0 85 274-367 54-141 (322)
287 PF00560 LRR_1: Leucine Rich R 94.8 0.016 3.6E-07 36.2 1.4 22 718-739 1-22 (22)
288 COG0464 SpoVK ATPases of the A 94.7 0.2 4.3E-06 59.8 11.7 133 273-431 276-425 (494)
289 COG0572 Udk Uridine kinase [Nu 94.7 0.068 1.5E-06 54.9 6.5 78 273-358 8-85 (218)
290 PRK05800 cobU adenosylcobinami 94.7 0.031 6.7E-07 56.0 4.0 84 274-366 2-85 (170)
291 COG0468 RecA RecA/RadA recombi 94.7 0.13 2.7E-06 55.5 8.8 87 274-367 61-151 (279)
292 COG4608 AppF ABC-type oligopep 94.7 0.11 2.3E-06 55.1 7.9 128 274-407 40-179 (268)
293 cd00544 CobU Adenosylcobinamid 94.7 0.059 1.3E-06 53.9 5.9 81 276-366 2-82 (169)
294 TIGR03877 thermo_KaiC_1 KaiC d 94.7 0.18 3.9E-06 53.7 10.0 46 274-325 22-67 (237)
295 COG1618 Predicted nucleotide k 94.6 0.034 7.5E-07 53.5 3.8 30 274-305 6-36 (179)
296 PRK10733 hflB ATP-dependent me 94.6 0.24 5.2E-06 60.7 12.0 131 274-431 186-337 (644)
297 KOG2228 Origin recognition com 94.6 0.33 7.2E-06 52.5 11.3 150 274-430 50-220 (408)
298 PF00158 Sigma54_activat: Sigm 94.6 0.091 2E-06 52.5 6.9 22 274-295 23-44 (168)
299 cd03216 ABC_Carb_Monos_I This 94.5 0.063 1.4E-06 53.5 5.8 115 274-398 27-143 (163)
300 TIGR01069 mutS2 MutS2 family p 94.5 0.021 4.5E-07 70.9 2.7 116 356-486 401-521 (771)
301 PRK04301 radA DNA repair and r 94.5 0.093 2E-06 58.6 7.7 55 274-331 103-161 (317)
302 PF08433 KTI12: Chromatin asso 94.5 0.068 1.5E-06 57.7 6.3 23 274-296 2-24 (270)
303 PRK11608 pspF phage shock prot 94.5 0.1 2.3E-06 58.3 8.0 22 274-295 30-51 (326)
304 PRK05480 uridine/cytidine kina 94.5 0.036 7.9E-07 57.8 4.1 25 272-296 5-29 (209)
305 KOG1051 Chaperone HSP104 and r 94.5 0.12 2.7E-06 63.6 9.0 91 272-378 590-681 (898)
306 PRK14722 flhF flagellar biosyn 94.5 0.13 2.9E-06 57.8 8.6 88 274-367 138-225 (374)
307 PRK15455 PrkA family serine pr 94.4 0.038 8.2E-07 64.5 4.3 22 274-295 104-125 (644)
308 PRK07667 uridine kinase; Provi 94.4 0.08 1.7E-06 54.4 6.3 22 274-295 18-39 (193)
309 PTZ00035 Rad51 protein; Provis 94.4 0.26 5.6E-06 55.2 10.8 56 274-332 119-178 (337)
310 KOG2035 Replication factor C, 94.3 0.71 1.5E-05 48.6 12.7 190 274-485 35-258 (351)
311 TIGR03878 thermo_KaiC_2 KaiC d 94.3 0.17 3.6E-06 54.7 8.9 37 274-312 37-73 (259)
312 PRK08533 flagellar accessory p 94.3 0.27 5.9E-06 52.0 10.3 47 274-326 25-71 (230)
313 cd03247 ABCC_cytochrome_bd The 94.3 0.2 4.3E-06 50.8 8.9 23 274-296 29-51 (178)
314 PF07724 AAA_2: AAA domain (Cd 94.3 0.061 1.3E-06 54.0 4.9 37 274-312 4-41 (171)
315 TIGR03574 selen_PSTK L-seryl-t 94.2 0.098 2.1E-06 56.2 6.9 22 275-296 1-22 (249)
316 KOG2123 Uncharacterized conser 94.2 0.0013 2.9E-08 68.1 -7.0 77 819-900 20-98 (388)
317 KOG0734 AAA+-type ATPase conta 94.2 0.12 2.7E-06 58.7 7.5 26 272-297 336-361 (752)
318 PTZ00301 uridine kinase; Provi 94.2 0.065 1.4E-06 55.6 5.1 28 274-303 4-31 (210)
319 PF13238 AAA_18: AAA domain; P 94.1 0.039 8.5E-07 52.2 3.1 21 276-296 1-21 (129)
320 KOG0730 AAA+-type ATPase [Post 94.0 0.4 8.6E-06 56.4 11.4 136 271-433 466-619 (693)
321 PLN03186 DNA repair protein RA 94.0 0.24 5.1E-06 55.4 9.5 56 274-332 124-183 (342)
322 cd03222 ABC_RNaseL_inhibitor T 94.0 0.25 5.3E-06 49.9 8.7 22 274-295 26-47 (177)
323 PRK04328 hypothetical protein; 94.0 0.16 3.5E-06 54.5 7.8 37 274-312 24-60 (249)
324 COG2607 Predicted ATPase (AAA+ 93.9 0.31 6.8E-06 50.2 9.1 95 274-398 86-184 (287)
325 cd03221 ABCF_EF-3 ABCF_EF-3 E 93.9 0.24 5.2E-06 48.2 8.3 96 274-398 27-128 (144)
326 TIGR02236 recomb_radA DNA repa 93.9 0.17 3.6E-06 56.4 8.1 55 274-331 96-154 (310)
327 TIGR00235 udk uridine kinase. 93.9 0.05 1.1E-06 56.6 3.7 22 274-295 7-28 (207)
328 KOG2739 Leucine-rich acidic nu 93.9 0.031 6.7E-07 58.2 2.0 65 666-731 62-130 (260)
329 KOG0743 AAA+-type ATPase [Post 93.9 1.5 3.2E-05 49.7 15.1 155 274-471 236-416 (457)
330 PRK15453 phosphoribulokinase; 93.9 0.83 1.8E-05 49.1 12.7 81 274-356 6-89 (290)
331 TIGR01817 nifA Nif-specific re 93.9 0.24 5.1E-06 59.7 9.8 23 274-296 220-242 (534)
332 PRK06762 hypothetical protein; 93.9 0.052 1.1E-06 54.3 3.6 22 274-295 3-24 (166)
333 cd02025 PanK Pantothenate kina 93.8 0.2 4.4E-06 52.5 8.1 36 275-312 1-38 (220)
334 TIGR03881 KaiC_arch_4 KaiC dom 93.8 0.31 6.7E-06 51.6 9.6 37 274-312 21-57 (229)
335 PRK09519 recA DNA recombinatio 93.8 0.16 3.4E-06 62.3 8.1 85 274-367 61-148 (790)
336 cd03228 ABCC_MRP_Like The MRP 93.7 0.3 6.5E-06 49.1 8.9 22 274-295 29-50 (171)
337 PRK10923 glnG nitrogen regulat 93.7 0.51 1.1E-05 55.9 12.3 23 274-296 162-184 (469)
338 PF13671 AAA_33: AAA domain; P 93.7 0.054 1.2E-06 52.5 3.3 21 275-295 1-21 (143)
339 PF07726 AAA_3: ATPase family 93.7 0.038 8.2E-07 51.7 2.0 28 276-305 2-29 (131)
340 PRK12724 flagellar biosynthesi 93.7 0.22 4.8E-06 56.5 8.4 23 274-296 224-246 (432)
341 COG1121 ZnuC ABC-type Mn/Zn tr 93.6 0.26 5.7E-06 52.0 8.3 128 274-404 31-206 (254)
342 cd02019 NK Nucleoside/nucleoti 93.6 0.056 1.2E-06 45.1 2.8 22 275-296 1-22 (69)
343 COG4618 ArpD ABC-type protease 93.6 0.17 3.6E-06 57.7 7.2 22 274-295 363-384 (580)
344 PRK12726 flagellar biosynthesi 93.6 0.35 7.6E-06 54.1 9.6 88 274-367 207-295 (407)
345 cd01122 GP4d_helicase GP4d_hel 93.6 0.53 1.2E-05 51.2 11.2 52 274-330 31-82 (271)
346 COG0542 clpA ATP-binding subun 93.6 0.14 3.1E-06 62.2 7.1 128 277-428 195-345 (786)
347 cd03230 ABC_DR_subfamily_A Thi 93.6 0.091 2E-06 52.9 4.8 120 274-402 27-159 (173)
348 cd00267 ABC_ATPase ABC (ATP-bi 93.5 0.13 2.8E-06 50.9 5.7 118 274-403 26-145 (157)
349 PRK06547 hypothetical protein; 93.5 0.074 1.6E-06 53.4 3.9 25 272-296 14-38 (172)
350 KOG2123 Uncharacterized conser 93.5 0.0043 9.4E-08 64.4 -4.9 80 633-727 17-98 (388)
351 PRK10416 signal recognition pa 93.5 0.27 5.9E-06 54.5 8.7 37 273-311 114-150 (318)
352 cd03246 ABCC_Protease_Secretio 93.5 0.15 3.3E-06 51.3 6.3 22 274-295 29-50 (173)
353 PRK12727 flagellar biosynthesi 93.5 0.26 5.6E-06 57.5 8.7 88 274-367 351-438 (559)
354 PRK03839 putative kinase; Prov 93.5 0.059 1.3E-06 54.7 3.2 22 275-296 2-23 (180)
355 COG1120 FepC ABC-type cobalami 93.4 0.26 5.6E-06 52.4 7.9 22 274-295 29-50 (258)
356 COG5238 RNA1 Ran GTPase-activa 93.3 0.063 1.4E-06 55.9 3.1 69 666-735 89-175 (388)
357 cd03215 ABC_Carb_Monos_II This 93.3 0.16 3.6E-06 51.5 6.3 22 274-295 27-48 (182)
358 PRK06002 fliI flagellum-specif 93.3 0.23 5E-06 57.1 7.9 87 274-367 166-264 (450)
359 PF01583 APS_kinase: Adenylyls 93.3 0.11 2.4E-06 50.8 4.7 35 274-310 3-37 (156)
360 COG1126 GlnQ ABC-type polar am 93.3 0.54 1.2E-05 48.0 9.5 129 274-406 29-204 (240)
361 COG4088 Predicted nucleotide k 93.3 0.23 4.9E-06 49.9 6.7 27 274-302 2-28 (261)
362 PF06745 KaiC: KaiC; InterPro 93.3 0.14 3.1E-06 54.1 5.9 88 274-367 20-125 (226)
363 PRK00625 shikimate kinase; Pro 93.3 0.066 1.4E-06 53.8 3.1 21 275-295 2-22 (173)
364 COG0563 Adk Adenylate kinase a 93.2 0.14 3.1E-06 51.6 5.5 22 275-296 2-23 (178)
365 KOG0727 26S proteasome regulat 93.2 0.25 5.3E-06 50.9 7.0 26 271-296 187-212 (408)
366 PF00006 ATP-synt_ab: ATP synt 93.2 0.33 7.1E-06 50.5 8.2 84 274-367 16-115 (215)
367 TIGR02974 phageshock_pspF psp 93.1 0.29 6.3E-06 54.8 8.3 22 274-295 23-44 (329)
368 PRK05703 flhF flagellar biosyn 93.1 0.33 7.2E-06 56.2 9.0 86 274-367 222-309 (424)
369 PRK04040 adenylate kinase; Pro 93.1 0.078 1.7E-06 54.1 3.5 22 274-295 3-24 (188)
370 COG0396 sufC Cysteine desulfur 93.1 0.54 1.2E-05 48.3 9.2 58 347-407 152-213 (251)
371 PF13481 AAA_25: AAA domain; P 93.0 0.4 8.6E-06 49.2 8.6 39 274-312 33-79 (193)
372 cd01121 Sms Sms (bacterial rad 93.0 0.23 5E-06 56.3 7.3 37 274-312 83-119 (372)
373 cd03238 ABC_UvrA The excision 93.0 0.23 5E-06 50.0 6.5 116 274-402 22-153 (176)
374 TIGR01360 aden_kin_iso1 adenyl 92.9 0.088 1.9E-06 53.7 3.6 22 274-295 4-25 (188)
375 COG0467 RAD55 RecA-superfamily 92.9 0.2 4.4E-06 54.2 6.5 37 274-312 24-60 (260)
376 PRK00131 aroK shikimate kinase 92.9 0.088 1.9E-06 52.9 3.4 22 274-295 5-26 (175)
377 KOG2739 Leucine-rich acidic nu 92.9 0.054 1.2E-06 56.4 1.9 112 614-733 44-159 (260)
378 COG1875 NYN ribonuclease and A 92.8 0.75 1.6E-05 50.4 10.3 118 273-395 245-386 (436)
379 cd01125 repA Hexameric Replica 92.8 0.66 1.4E-05 49.4 10.2 23 274-296 2-24 (239)
380 PRK14721 flhF flagellar biosyn 92.8 0.58 1.3E-05 53.7 10.1 38 274-311 192-229 (420)
381 COG0541 Ffh Signal recognition 92.8 0.39 8.5E-06 54.0 8.4 61 270-333 97-157 (451)
382 smart00534 MUTSac ATPase domai 92.8 0.025 5.3E-07 57.8 -0.8 22 275-296 1-22 (185)
383 COG1223 Predicted ATPase (AAA+ 92.7 0.84 1.8E-05 47.5 10.0 129 274-430 152-298 (368)
384 TIGR02858 spore_III_AA stage I 92.7 0.45 9.7E-06 51.4 8.7 113 274-398 112-230 (270)
385 TIGR02655 circ_KaiC circadian 92.7 0.49 1.1E-05 56.1 9.8 51 274-331 264-314 (484)
386 TIGR00554 panK_bact pantothena 92.6 0.34 7.4E-06 52.8 7.7 78 272-357 61-141 (290)
387 cd03285 ABC_MSH2_euk MutS2 hom 92.6 0.041 8.8E-07 57.9 0.6 23 274-296 31-53 (222)
388 KOG2004 Mitochondrial ATP-depe 92.6 0.16 3.5E-06 59.9 5.4 28 274-303 439-466 (906)
389 PRK11823 DNA repair protein Ra 92.6 0.67 1.4E-05 54.2 10.7 37 274-312 81-117 (446)
390 COG0003 ArsA Predicted ATPase 92.6 0.2 4.3E-06 55.3 5.9 47 274-324 3-49 (322)
391 PRK07276 DNA polymerase III su 92.5 2.6 5.6E-05 46.0 14.3 70 356-427 103-173 (290)
392 KOG0730 AAA+-type ATPase [Post 92.5 0.65 1.4E-05 54.7 10.1 159 268-458 213-386 (693)
393 cd00984 DnaB_C DnaB helicase C 92.5 0.55 1.2E-05 50.1 9.2 52 274-330 14-65 (242)
394 PRK13947 shikimate kinase; Pro 92.5 0.096 2.1E-06 52.6 3.1 21 275-295 3-23 (171)
395 cd02028 UMPK_like Uridine mono 92.5 0.13 2.8E-06 52.1 4.0 36 275-312 1-36 (179)
396 cd03281 ABC_MSH5_euk MutS5 hom 92.4 0.68 1.5E-05 48.3 9.4 23 273-295 29-51 (213)
397 cd02029 PRK_like Phosphoribulo 92.4 1.5 3.2E-05 46.9 11.7 82 275-358 1-85 (277)
398 PRK14723 flhF flagellar biosyn 92.4 0.55 1.2E-05 57.5 9.7 86 274-367 186-273 (767)
399 cd01135 V_A-ATPase_B V/A-type 92.4 0.53 1.1E-05 50.5 8.5 90 274-367 70-176 (276)
400 KOG3347 Predicted nucleotide k 92.3 0.17 3.7E-06 48.0 4.2 32 274-312 8-39 (176)
401 TIGR02322 phosphon_PhnN phosph 92.3 0.11 2.3E-06 52.7 3.3 23 274-296 2-24 (179)
402 PRK13948 shikimate kinase; Pro 92.3 0.12 2.6E-06 52.3 3.6 24 272-295 9-32 (182)
403 PRK00889 adenylylsulfate kinas 92.3 0.17 3.8E-06 51.0 4.8 23 274-296 5-27 (175)
404 KOG3864 Uncharacterized conser 92.3 0.018 3.8E-07 57.6 -2.4 82 867-948 102-185 (221)
405 COG1066 Sms Predicted ATP-depe 92.3 0.54 1.2E-05 52.4 8.6 83 274-367 94-178 (456)
406 PRK08972 fliI flagellum-specif 92.3 0.35 7.5E-06 55.4 7.4 84 274-367 163-262 (444)
407 PRK03846 adenylylsulfate kinas 92.3 0.2 4.3E-06 51.7 5.2 23 273-295 24-46 (198)
408 PF13504 LRR_7: Leucine rich r 92.2 0.098 2.1E-06 30.4 1.6 16 718-733 2-17 (17)
409 COG3640 CooC CO dehydrogenase 92.2 0.24 5.2E-06 51.0 5.4 41 275-318 2-42 (255)
410 PRK00409 recombination and DNA 92.1 0.44 9.6E-06 59.5 8.9 183 273-486 327-526 (782)
411 COG1428 Deoxynucleoside kinase 92.1 0.12 2.6E-06 52.5 3.1 23 274-296 5-27 (216)
412 TIGR01359 UMP_CMP_kin_fam UMP- 92.1 0.1 2.2E-06 53.1 2.7 21 275-295 1-21 (183)
413 TIGR02329 propionate_PrpR prop 92.1 1.5 3.3E-05 52.2 12.9 23 274-296 236-258 (526)
414 PRK12678 transcription termina 92.1 0.7 1.5E-05 54.1 9.6 89 274-367 417-513 (672)
415 cd02023 UMPK Uridine monophosp 92.1 0.1 2.2E-06 53.9 2.8 21 275-295 1-21 (198)
416 PF12775 AAA_7: P-loop contain 92.1 0.28 6E-06 53.2 6.2 22 274-295 34-55 (272)
417 PRK10463 hydrogenase nickel in 92.1 0.46 1E-05 51.4 7.8 29 273-303 104-132 (290)
418 COG2884 FtsE Predicted ATPase 92.0 0.76 1.6E-05 45.8 8.3 57 347-406 145-205 (223)
419 PRK05986 cob(I)alamin adenolsy 92.0 0.85 1.8E-05 46.2 9.0 122 274-398 23-159 (191)
420 cd02024 NRK1 Nicotinamide ribo 91.9 0.11 2.4E-06 52.8 2.7 22 275-296 1-22 (187)
421 cd03223 ABCD_peroxisomal_ALDP 91.9 0.69 1.5E-05 46.2 8.5 114 274-402 28-152 (166)
422 PRK10751 molybdopterin-guanine 91.9 0.17 3.7E-06 50.5 4.0 23 274-296 7-29 (173)
423 PF03205 MobB: Molybdopterin g 91.9 0.22 4.8E-06 48.1 4.7 37 274-312 1-38 (140)
424 PRK13949 shikimate kinase; Pro 91.9 0.13 2.8E-06 51.6 3.2 22 274-295 2-23 (169)
425 cd02034 CooC The accessory pro 91.9 0.68 1.5E-05 43.1 7.8 34 276-311 2-35 (116)
426 PRK09270 nucleoside triphospha 91.9 0.16 3.4E-06 53.8 4.0 25 271-295 31-55 (229)
427 PRK05917 DNA polymerase III su 91.9 2.2 4.8E-05 46.4 12.7 60 356-416 94-154 (290)
428 cd02020 CMPK Cytidine monophos 91.9 0.11 2.5E-06 50.4 2.8 21 275-295 1-21 (147)
429 PRK12597 F0F1 ATP synthase sub 91.8 0.62 1.3E-05 54.0 8.8 89 274-367 144-247 (461)
430 PRK06217 hypothetical protein; 91.8 0.13 2.8E-06 52.4 3.0 23 274-296 2-24 (183)
431 COG2019 AdkA Archaeal adenylat 91.7 0.16 3.4E-06 49.3 3.3 23 273-295 4-26 (189)
432 TIGR03575 selen_PSTK_euk L-ser 91.7 0.38 8.2E-06 53.6 6.8 36 276-312 2-37 (340)
433 PRK15424 propionate catabolism 91.7 1.1 2.5E-05 53.2 11.2 23 274-296 243-265 (538)
434 TIGR00416 sms DNA repair prote 91.7 0.94 2E-05 53.0 10.4 37 274-312 95-131 (454)
435 PTZ00185 ATPase alpha subunit; 91.7 0.71 1.5E-05 53.4 9.0 89 274-367 190-299 (574)
436 TIGR01287 nifH nitrogenase iro 91.7 0.17 3.7E-06 55.3 4.1 37 274-312 1-37 (275)
437 PF00625 Guanylate_kin: Guanyl 91.7 0.19 4.1E-06 51.2 4.2 36 274-311 3-38 (183)
438 COG0465 HflB ATP-dependent Zn 91.6 1.5 3.2E-05 52.2 11.8 26 273-298 183-208 (596)
439 KOG0927 Predicted transporter 91.6 0.4 8.7E-06 55.0 6.9 57 347-406 229-287 (614)
440 cd02021 GntK Gluconate kinase 91.6 0.13 2.8E-06 50.4 2.7 22 275-296 1-22 (150)
441 cd01136 ATPase_flagellum-secre 91.5 0.62 1.4E-05 51.6 8.3 87 274-367 70-169 (326)
442 PRK05439 pantothenate kinase; 91.5 0.6 1.3E-05 51.3 8.1 81 271-358 84-166 (311)
443 TIGR03263 guanyl_kin guanylate 91.5 0.14 3E-06 51.9 3.0 22 274-295 2-23 (180)
444 PRK06995 flhF flagellar biosyn 91.5 0.86 1.9E-05 53.2 9.7 39 274-312 257-295 (484)
445 cd01124 KaiC KaiC is a circadi 91.5 0.36 7.9E-06 49.1 6.1 36 275-312 1-36 (187)
446 PF00910 RNA_helicase: RNA hel 91.5 0.13 2.9E-06 47.1 2.6 21 276-296 1-21 (107)
447 cd00227 CPT Chloramphenicol (C 91.5 0.16 3.5E-06 51.2 3.4 23 274-296 3-25 (175)
448 COG1124 DppF ABC-type dipeptid 91.5 0.21 4.5E-06 51.8 4.1 22 274-295 34-55 (252)
449 PTZ00088 adenylate kinase 1; P 91.4 0.22 4.8E-06 52.4 4.5 21 275-295 8-28 (229)
450 TIGR00150 HI0065_YjeE ATPase, 91.4 0.24 5.2E-06 47.1 4.2 23 274-296 23-45 (133)
451 KOG1947 Leucine rich repeat pr 91.4 0.02 4.2E-07 68.1 -4.0 164 813-976 183-364 (482)
452 TIGR00708 cobA cob(I)alamin ad 91.4 1.1 2.4E-05 44.7 9.0 121 274-398 6-141 (173)
453 cd00071 GMPK Guanosine monopho 91.3 0.15 3.3E-06 49.1 2.9 21 275-295 1-21 (137)
454 cd03213 ABCG_EPDR ABCG transpo 91.3 0.93 2E-05 46.6 8.9 22 274-295 36-57 (194)
455 KOG0924 mRNA splicing factor A 91.3 0.69 1.5E-05 54.1 8.3 122 274-405 372-520 (1042)
456 KOG0736 Peroxisome assembly fa 91.3 0.76 1.7E-05 54.9 8.9 69 274-367 706-774 (953)
457 PRK13236 nitrogenase reductase 91.3 0.28 6.1E-06 54.1 5.3 23 273-295 6-28 (296)
458 PRK08927 fliI flagellum-specif 91.2 0.55 1.2E-05 54.0 7.6 84 274-367 159-258 (442)
459 cd01672 TMPK Thymidine monopho 91.2 0.42 9.1E-06 49.1 6.3 22 275-296 2-23 (200)
460 KOG1532 GTPase XAB1, interacts 91.2 0.25 5.4E-06 51.6 4.3 87 274-365 20-123 (366)
461 TIGR01420 pilT_fam pilus retra 91.2 0.26 5.6E-06 55.6 4.9 92 274-378 123-214 (343)
462 KOG0651 26S proteasome regulat 91.1 0.33 7.2E-06 51.8 5.3 33 269-303 162-194 (388)
463 PRK10820 DNA-binding transcrip 91.1 0.71 1.5E-05 55.2 8.9 22 274-295 228-249 (520)
464 COG2842 Uncharacterized ATPase 91.1 0.79 1.7E-05 49.1 8.1 95 274-382 95-190 (297)
465 COG0703 AroK Shikimate kinase 91.1 0.18 4E-06 49.8 3.2 28 274-303 3-30 (172)
466 KOG0729 26S proteasome regulat 91.1 0.22 4.9E-06 51.5 3.8 31 271-303 209-239 (435)
467 PF02374 ArsA_ATPase: Anion-tr 91.1 0.27 5.9E-06 54.3 4.9 22 274-295 2-23 (305)
468 PRK08149 ATP synthase SpaL; Va 91.0 0.41 8.8E-06 54.9 6.4 85 274-367 152-251 (428)
469 cd00464 SK Shikimate kinase (S 91.0 0.17 3.8E-06 49.6 3.0 20 276-295 2-21 (154)
470 PRK13946 shikimate kinase; Pro 90.9 0.19 4.2E-06 51.1 3.4 22 274-295 11-32 (184)
471 PRK11388 DNA-binding transcrip 90.9 0.67 1.4E-05 57.2 8.7 22 274-295 349-370 (638)
472 PRK05057 aroK shikimate kinase 90.9 0.19 4.2E-06 50.5 3.3 23 274-296 5-27 (172)
473 TIGR00073 hypB hydrogenase acc 90.9 0.21 4.6E-06 52.0 3.6 27 270-296 19-45 (207)
474 PRK12339 2-phosphoglycerate ki 90.9 0.22 4.7E-06 51.2 3.6 23 274-296 4-26 (197)
475 COG1936 Predicted nucleotide k 90.9 0.18 3.9E-06 49.4 2.8 20 275-294 2-21 (180)
476 PLN02200 adenylate kinase fami 90.8 0.26 5.6E-06 52.2 4.3 23 273-295 43-65 (234)
477 PF13504 LRR_7: Leucine rich r 90.8 0.15 3.3E-06 29.6 1.4 16 695-710 2-17 (17)
478 PF03796 DnaB_C: DnaB-like hel 90.8 1.1 2.5E-05 48.3 9.4 54 274-332 20-73 (259)
479 cd02040 NifH NifH gene encodes 90.8 0.32 7E-06 52.9 5.1 37 274-312 2-38 (270)
480 TIGR00382 clpX endopeptidase C 90.7 0.41 8.9E-06 54.8 6.0 22 274-295 117-138 (413)
481 PRK00300 gmk guanylate kinase; 90.7 0.22 4.9E-06 51.6 3.7 23 274-296 6-28 (205)
482 PRK13765 ATP-dependent proteas 90.7 0.28 6E-06 59.4 4.9 55 274-333 51-106 (637)
483 TIGR03498 FliI_clade3 flagella 90.7 0.55 1.2E-05 53.9 7.0 22 274-295 141-162 (418)
484 PRK13768 GTPase; Provisional 90.7 0.35 7.6E-06 52.0 5.2 36 274-311 3-38 (253)
485 PLN02165 adenylate isopentenyl 90.6 0.26 5.6E-06 54.3 4.2 23 274-296 44-66 (334)
486 PRK14530 adenylate kinase; Pro 90.6 0.2 4.3E-06 52.5 3.1 22 274-295 4-25 (215)
487 PRK14527 adenylate kinase; Pro 90.5 0.24 5.3E-06 50.7 3.7 23 274-296 7-29 (191)
488 PRK13230 nitrogenase reductase 90.5 0.27 5.9E-06 53.8 4.3 37 274-312 2-38 (279)
489 PF00142 Fer4_NifH: 4Fe-4S iro 90.4 0.32 6.9E-06 51.3 4.4 37 274-312 1-37 (273)
490 TIGR02868 CydC thiol reductant 90.4 1.1 2.4E-05 54.0 9.8 22 274-295 362-383 (529)
491 PRK14737 gmk guanylate kinase; 90.4 0.25 5.3E-06 50.4 3.5 22 274-295 5-26 (186)
492 PRK10078 ribose 1,5-bisphospho 90.4 0.21 4.5E-06 51.0 3.0 22 274-295 3-24 (186)
493 PRK13975 thymidylate kinase; P 90.3 0.23 5.1E-06 51.0 3.4 23 274-296 3-25 (196)
494 cd00046 DEXDc DEAD-like helica 90.3 0.99 2.1E-05 42.7 7.6 36 275-310 2-37 (144)
495 cd01129 PulE-GspE PulE/GspE Th 90.3 0.43 9.3E-06 51.6 5.5 86 274-376 81-166 (264)
496 cd01134 V_A-ATPase_A V/A-type 90.3 1.5 3.2E-05 48.7 9.4 48 274-327 158-206 (369)
497 cd01132 F1_ATPase_alpha F1 ATP 90.3 0.67 1.4E-05 49.7 6.7 84 274-367 70-171 (274)
498 TIGR00041 DTMP_kinase thymidyl 90.2 0.62 1.3E-05 47.8 6.5 23 274-296 4-26 (195)
499 TIGR03880 KaiC_arch_3 KaiC dom 90.2 0.92 2E-05 47.8 7.9 37 274-312 17-53 (224)
500 PRK06936 type III secretion sy 90.1 0.84 1.8E-05 52.4 7.8 84 274-367 163-262 (439)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=6.1e-86 Score=801.14 Aligned_cols=806 Identities=25% Similarity=0.310 Sum_probs=613.7
Q ss_pred chhhHHHHHHHhhhhhhhhcccchhhhhhHHHHHH---HHHHHHHHhhccCCCCCcccCCcccCH-----HHHHHHhhcc
Q 001843 3 AESSVSLLIVKLKTLFPAADEGATISSWTQKRVLK---AIESLQLLIKNKKPCLDSSAGGEAADD-----EARFMQAFYS 74 (1007)
Q Consensus 3 a~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~---~l~~~~~~l~~~~~~~~~a~~~~~~~~-----~~~~r~~~yd 74 (1007)
|++.++..++|+.+++.+++ ..+.|+++.+.. +|..++++++| |++++.... +..+++++|+
T Consensus 1 ~~~~~s~~~~~~~~~l~~~~---~~~~~~~~~i~~Lk~~L~~l~~~l~d-------~~a~~~~~~~~~~~~e~~~~~~~~ 70 (889)
T KOG4658|consen 1 MGACVSFGVEKLDQLLNRES---ECLDGKDNYILELKENLKALQSALED-------LDAKRDDLERRVNWEEDVGDLVYL 70 (889)
T ss_pred CCeEEEEehhhHHHHHHHHH---HHHhchHHHHHHHHHHHHHHHHHHHH-------HHhhcchHHHHHHHHHHHHHHHHH
Confidence 45677888999999999999 888899888877 99999999999 998876554 8899999999
Q ss_pred hHHHHhHhHHhhhhccccccCCce--eeeeeeeccccch-hhhHHhHHH------HhcccchhhhhhhhhcCCCCCCCch
Q 001843 75 AQDAINGLAIREEVCQMWRIDPVW--VTILTVTTFPFSS-FENLRLRSL------FSFGMNKFKRELEIRGSSSSSSSSY 145 (1007)
Q Consensus 75 ~eD~lD~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~-~~~~~i~~l------i~~~~~~~~~~~~~~~~~~~~~~~~ 145 (1007)
+||.++.|.......+..+..... ..+ .++....+ ..+..+..+ +-+.++.|...
T Consensus 71 ~e~~~~~~~v~~~~~~~~~~l~~~~~~~~--~~c~~~~~~~~~~~~~~~~~rv~~~l~~ve~l~~~-------------- 134 (889)
T KOG4658|consen 71 AEDIIWLFLVEEIERKANDLLSTRSVERQ--RLCLCGFCSKNVSDSYKYGKRVSKVLREVESLGSK-------------- 134 (889)
T ss_pred HHHHHHHHHHHHHHHHHhHHhhhhHHHHH--HHhhhhhHhHhhhhhHhHHHHHHHHHHHHHHhccc--------------
Confidence 999999999877665321111100 000 11111111 333333333 34444555111
Q ss_pred hhhhhhhcccCCCCCCCCCCCCCccchhhhhhhhhccccccccCCccEEecchhHHHHHHhhcCCCCCCCcccccccccc
Q 001843 146 EHQQQLVEVNDTGPSFSPYQGGYSTHRSQQQRWARISDYFCAEDETDVLGLERQVKELLHVLIPEHHGINDADVSTKKIV 225 (1007)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~ 225 (1007)
+... .++ .. ......+...+.....+ ||.+..++++.+.|.+++.
T Consensus 135 ~~~~---------------~~~---~~---~~~~~~~e~~~~~~~~~-VG~e~~~~kl~~~L~~d~~------------- 179 (889)
T KOG4658|consen 135 GVFE---------------VVG---ES---LDPREKVETRPIQSESD-VGLETMLEKLWNRLMEDDV------------- 179 (889)
T ss_pred ccee---------------ccc---cc---ccchhhcccCCCCcccc-ccHHHHHHHHHHHhccCCC-------------
Confidence 1110 000 00 00222355566666666 9999999999999997664
Q ss_pred ccccccccCCcccccCCCCCcCCCCCCCCchhhccccccccCCCCCCcEEEEEEcCCCChHHHHHHHHHhhhh-cccCCC
Q 001843 226 DGYEYARSSGEEITELPIPEQEGGGDALSNEEEESGRCQSSSTTTTTTQVIALIGKAGSGKTTLARIVYNRVY-VKRHFT 304 (1007)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~-~~~~F~ 304 (1007)
.+++|+||||+||||||++++|+.. ++.+|+
T Consensus 180 ------------------------------------------------~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd 211 (889)
T KOG4658|consen 180 ------------------------------------------------GIVGIYGMGGVGKTTLARQIFNKFDEVGNHFD 211 (889)
T ss_pred ------------------------------------------------CEEEEECCCcccHHHHHHHHhcccchhcccCc
Confidence 8999999999999999999999987 999999
Q ss_pred ceEEEEecCCCCCCHHHHHHHHHHHHhhhhhhhccccCHHHHHHHHHHHcCCCcEEEEEeCcCccCchhhhhhc-cccCC
Q 001843 305 KRAWVHIPIMSMVEDRDVLADILKQIDESLLKVEATLSAEELMWRITQALDDSTFLIVMENAEHQKSQVWDSFL-GKLCS 383 (1007)
Q Consensus 305 ~~~wv~~s~~~~~~~~~~l~~il~~l~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~~~~~~~~l~-~l~~~ 383 (1007)
.++||+|| +.++...++.+|++.++.. ...........++..+.+.|++||||||||||| +..+|+.+. ++|..
T Consensus 212 ~~iWV~VS--k~f~~~~iq~~Il~~l~~~-~~~~~~~~~~~~~~~i~~~L~~krfllvLDDIW--~~~dw~~I~~~~p~~ 286 (889)
T KOG4658|consen 212 GVIWVVVS--KEFTTRKIQQTILERLGLL-DEEWEDKEEDELASKLLNLLEGKRFLLVLDDIW--EEVDWDKIGVPFPSR 286 (889)
T ss_pred eEEEEEEc--ccccHHhHHHHHHHHhccC-CcccchhhHHHHHHHHHHHhccCceEEEEeccc--ccccHHhcCCCCCCc
Confidence 99999999 9999999999999999874 122233344788999999999999999999999 888899999 99998
Q ss_pred CCCCcEEEEEcCCCcccccc-cCCcceeeecCCCCHHHHHHHHHhhhccccccccCCChHHHHHHHHHHHHcCCCchHHH
Q 001843 384 FTQCGKIIITTSSTEDFVEP-LGAAFSTLHVPGLGKNESWELFLKKARIAEDVLQSRSSELIKLKKQILNICDGLPLRVV 462 (1007)
Q Consensus 384 ~~~gs~IliTTR~~~~va~~-~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~ 462 (1007)
..||||++|||+.. |+.. ++.. ..++++.|+++|||+||++.+|.... ...+.++++|++|+++|+|+|||++
T Consensus 287 -~~g~KvvlTTRs~~-V~~~~m~~~-~~~~v~~L~~~eaW~LF~~~v~~~~~---~~~~~i~~lak~v~~kC~GLPLAl~ 360 (889)
T KOG4658|consen 287 -ENGSKVVLTTRSEE-VCGRAMGVD-YPIEVECLTPEEAWDLFQKKVGPNTL---GSHPDIEELAKEVAEKCGGLPLALN 360 (889)
T ss_pred -cCCeEEEEEeccHh-hhhccccCC-ccccccccCccccHHHHHHhhccccc---cccccHHHHHHHHHHHhCChHHHHH
Confidence 89999999999999 9998 5554 99999999999999999999998754 2345589999999999999999999
Q ss_pred HHHHHhcCCCCChHHHHHHHHHcc-------------cchhhhhhhcCCccCchhhhhhhccCCCCcccchhHHHHHHHh
Q 001843 463 LLAGLLSTKQPSYEEWSKVIERAN-------------GDNLVALCYQDLPAQVKPCILYMGLFPREYEIPVRRLIHLWCA 529 (1007)
Q Consensus 463 ~~g~~L~~~~~~~~~w~~~l~~l~-------------i~~~l~~sy~~L~~~~k~cfl~la~fp~~~~i~~~~Li~~Wia 529 (1007)
++|+.|+.+.. .++|+++.+.+. +..+|.+||++||+++|.||+|||+||+||.|+++.||.+|+|
T Consensus 361 viG~~ma~K~t-~~eW~~~~~~l~s~~~~~~~~~~~~i~~iLklSyd~L~~~lK~CFLycalFPED~~I~~e~Li~yWia 439 (889)
T KOG4658|consen 361 VLGGLLACKKT-VQEWRRALNVLKSSLAADFSGMEESILPILKLSYDNLPEELKSCFLYCALFPEDYEIKKEKLIEYWIA 439 (889)
T ss_pred HHHHHhcCCCc-HHHHHHHHccccccccCCCCchhhhhHHhhhccHhhhhHHHHHHHHhhccCCcccccchHHHHHHHHh
Confidence 99999999986 889999999874 7799999999999999999999999999999999999999999
Q ss_pred cccCCCCCCccCCHHHHHHHHHHHHHhccceEEEeecCCCCcceEEcCHHHHHHHHhhhh-----hcCeEEEecCCCCcc
Q 001843 530 EGFAPPDLDLIASEEDLAEMYLEELVTRHMIQVIRWRLDGSPKTCCMPGVLYDILRPKAE-----DIGFLYHHHHPQRLN 604 (1007)
Q Consensus 530 eg~i~~~~~~~~~~e~~~~~~l~~Lv~rsll~~~~~~~~g~~~~~~mHdlv~d~~~~~~~-----~e~f~~~~~~~~~~~ 604 (1007)
|||+. +...+.+.++.|+.|+.+|++++|++..... ++..+|+|||+||++|.++++ +|+++ +.++.+..
T Consensus 440 EGfi~-~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~~~--~~~~~~kmHDvvRe~al~ias~~~~~~e~~i--v~~~~~~~ 514 (889)
T KOG4658|consen 440 EGFID-PLDGGETAEDVGYDYIEELVRASLLIEERDE--GRKETVKMHDVVREMALWIASDFGKQEENQI--VSDGVGLS 514 (889)
T ss_pred ccCcC-ccccccchhcchHHHHHHHHHHHHHhhcccc--cceeEEEeeHHHHHHHHHHhccccccccceE--EECCcCcc
Confidence 99994 3466889999999999999999999987643 677899999999999999999 77765 33333333
Q ss_pred cccCCCCCCCeEEEEEecCCCCCCCCCcCCCcceEEEEecccc--CCCCchhhhhhhccccccCCCCcccEEEecCCC-C
Q 001843 605 SSAKSLPKFAVRRLAANLGSNSFPYSSLLSWRLHSYLVFDSRI--RGTPAKQIGIILGKCISKRRLGMLKVLDLEGVY-K 681 (1007)
Q Consensus 605 ~~~~~~~~~~~r~Lsl~~~~~~~~~~~~~~~~LRsL~l~~~~~--~~~~~~~i~~~l~~~~~~~~l~~Lr~L~Ls~~~-l 681 (1007)
..+....+..+||++++++..........+++|+||.+.++.. .. +...+| ..++.||||||++|. +
T Consensus 515 ~~~~~~~~~~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~~--------is~~ff--~~m~~LrVLDLs~~~~l 584 (889)
T KOG4658|consen 515 EIPQVKSWNSVRRMSLMNNKIEHIAGSSENPKLRTLLLQRNSDWLLE--------ISGEFF--RSLPLLRVLDLSGNSSL 584 (889)
T ss_pred ccccccchhheeEEEEeccchhhccCCCCCCccceEEEeecchhhhh--------cCHHHH--hhCcceEEEECCCCCcc
Confidence 3445557788999999999988777777888999999999862 21 445678 999999999999876 4
Q ss_pred CCcCCCccccCCCcCcEEecccCCCcccCcccccCCCCCEEeecCC-cccccccc---ccccceeccccccccccccccc
Q 001843 682 PMLTNNNALGRLPFLEYLGLRSTFIDSLPDSTPILFCLATLDVSHT-KVQRLPYA---FWPSRHLYLNWIFLATNVFRHP 757 (1007)
Q Consensus 682 ~~~~lp~~i~~L~~Lr~L~L~~n~i~~LP~~i~~L~~L~~L~L~~~-~l~~lP~~---i~~Lr~L~l~~~~~~~~~~~~p 757 (1007)
. ++|..|++|.|||||+|+++.|+.||.++++|+.|++||+..+ .+..+|.. +.+||+|.+. ... .....
T Consensus 585 ~--~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~---~s~-~~~~~ 658 (889)
T KOG4658|consen 585 S--KLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLP---RSA-LSNDK 658 (889)
T ss_pred C--cCChHHhhhhhhhcccccCCCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEee---ccc-cccch
Confidence 4 8999999999999999999999999999999999999999998 55555553 4555888887 322 12222
Q ss_pred ccccCcCCCccccceeeCCCcccChHhhhcCCCCCeEEeeec-C-CCchhhHHHHHHHhhcCCCCCeEEEeecCCCCCCc
Q 001843 758 QFVKWETSLQTLWGLCIKADEVQSLDYFRRLTSLRKLGLKCS-S-TTSTSLKKEIIGAVLQLSELHSLKLICETPSYLPL 835 (1007)
Q Consensus 758 ~~i~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~-~-~~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~ 835 (1007)
..++.+.+|++|..+.+...+......+..+++|+++...-. . ....... .++..+.+|+.|.+..+.......
T Consensus 659 ~~l~el~~Le~L~~ls~~~~s~~~~e~l~~~~~L~~~~~~l~~~~~~~~~~~----~~~~~l~~L~~L~i~~~~~~e~~~ 734 (889)
T KOG4658|consen 659 LLLKELENLEHLENLSITISSVLLLEDLLGMTRLRSLLQSLSIEGCSKRTLI----SSLGSLGNLEELSILDCGISEIVI 734 (889)
T ss_pred hhHHhhhcccchhhheeecchhHhHhhhhhhHHHHHHhHhhhhcccccceee----cccccccCcceEEEEcCCCchhhc
Confidence 334555666666555555443333445555555553322221 0 1123344 778889999999999855432111
Q ss_pred cccc------CCCCCcEEEecccC-CCCCcCccCCCCCCceEEEEEeeecCCCCcCccccCCCCcEEEeecCCcCCCcee
Q 001843 836 LEMA------EHYKLQKLYLSGHL-PPNSVIGDRSFPPNVVTLTLSQLRLEYDPMPILGRLRQLKILRLFGGSYTGEEMS 908 (1007)
Q Consensus 836 ~~l~------~~~~L~~L~L~g~~-~~lp~~~i~~~l~~L~~L~L~~~~l~~~~~~~l~~Lp~L~~L~L~~~~~~~~~l~ 908 (1007)
.... .+++|.++.+.++. ...+. |..- .++|+.|.+..|...+.+++....+..+..+.+..+.+.+....
T Consensus 735 ~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~-~~~f-~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~~l~~~ 812 (889)
T KOG4658|consen 735 EWEESLIVLLCFPNLSKVSILNCHMLRDLT-WLLF-APHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKLEGLRML 812 (889)
T ss_pred ccccccchhhhHHHHHHHHhhccccccccc-hhhc-cCcccEEEEecccccccCCCHHHHhhhcccEEecccccccceee
Confidence 1111 13355555555544 55555 6654 89999999999998888999888888888877765666554445
Q ss_pred ecCCCCCCCcEEEeccCCCCcceEEcC----CCCccccEeEeecc-CCCC-CCcC
Q 001843 909 CSSGEFPNLLVLKLWKLNRLRQWRIKE----GAMPCLRQLEIRSC-GYLV-PPTG 957 (1007)
Q Consensus 909 ~~~~~fp~L~~L~L~~~~~L~~l~~~~----~~~p~L~~L~l~~c-~~L~-lp~~ 957 (1007)
...++||++..+.+... .+..|.++. +.||.+.++.+.+| .++. +|.+
T Consensus 813 ~~l~~l~~i~~~~l~~~-~l~~~~ve~~p~l~~~P~~~~~~i~~~~~~~~~~~~~ 866 (889)
T KOG4658|consen 813 CSLGGLPQLYWLPLSFL-KLEELIVEECPKLGKLPLLSTLTIVGCEEKLKEYPDG 866 (889)
T ss_pred ecCCCCceeEecccCcc-chhheehhcCcccccCccccccceeccccceeecCCc
Confidence 56677777777777763 366666655 56777777777775 4444 5554
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=2.2e-60 Score=610.42 Aligned_cols=665 Identities=17% Similarity=0.193 Sum_probs=444.1
Q ss_pred cccCCccEEecchhHHHHHHhhcCCCCCCCccccccccccccccccccCCcccccCCCCCcCCCCCCCCchhhccccccc
Q 001843 186 CAEDETDVLGLERQVKELLHVLIPEHHGINDADVSTKKIVDGYEYARSSGEEITELPIPEQEGGGDALSNEEEESGRCQS 265 (1007)
Q Consensus 186 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (1007)
+..+..++|||+..++++..+|..+.. +.
T Consensus 179 ~~~~~~~~vG~~~~l~~l~~lL~l~~~-------------------------------------------------~~-- 207 (1153)
T PLN03210 179 PSNDFEDFVGIEDHIAKMSSLLHLESE-------------------------------------------------EV-- 207 (1153)
T ss_pred cCcccccccchHHHHHHHHHHHccccC-------------------------------------------------ce--
Confidence 334567899999999999998853322 33
Q ss_pred cCCCCCCcEEEEEEcCCCChHHHHHHHHHhhhhcccCCCceEEEEe---cCCC-C--------CC-HHHHHHHHHHHHhh
Q 001843 266 SSTTTTTTQVIALIGKAGSGKTTLARIVYNRVYVKRHFTKRAWVHI---PIMS-M--------VE-DRDVLADILKQIDE 332 (1007)
Q Consensus 266 ~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~---s~~~-~--------~~-~~~~l~~il~~l~~ 332 (1007)
++|+||||||+||||||+++|+ ++..+|+..+|+.. +... . +. ...++.+++.++..
T Consensus 208 --------~vvgI~G~gGiGKTTLA~~l~~--~l~~~F~g~vfv~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~l~~il~ 277 (1153)
T PLN03210 208 --------RMVGIWGSSGIGKTTIARALFS--RLSRQFQSSVFIDRAFISKSMEIYSSANPDDYNMKLHLQRAFLSEILD 277 (1153)
T ss_pred --------EEEEEEcCCCCchHHHHHHHHH--HHhhcCCeEEEeeccccccchhhcccccccccchhHHHHHHHHHHHhC
Confidence 9999999999999999999999 78889999888742 1000 0 00 12344444444433
Q ss_pred hhhhhccccCHHHHHHHHHHHcCCCcEEEEEeCcCccCchhhhhhccccCCCCCCcEEEEEcCCCcccccccCCcceeee
Q 001843 333 SLLKVEATLSAEELMWRITQALDDSTFLIVMENAEHQKSQVWDSFLGKLCSFTQCGKIIITTSSTEDFVEPLGAAFSTLH 412 (1007)
Q Consensus 333 ~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~~~~~~~~l~~l~~~~~~gs~IliTTR~~~~va~~~~~~~~~~~ 412 (1007)
. ....... ...+++.|+++|+|||||||| +..+|+.+......++.||+||||||++. ++..++.. ++|+
T Consensus 278 ~-----~~~~~~~-~~~~~~~L~~krvLLVLDdv~--~~~~l~~L~~~~~~~~~GsrIIiTTrd~~-vl~~~~~~-~~~~ 347 (1153)
T PLN03210 278 K-----KDIKIYH-LGAMEERLKHRKVLIFIDDLD--DQDVLDALAGQTQWFGSGSRIIVITKDKH-FLRAHGID-HIYE 347 (1153)
T ss_pred C-----CCcccCC-HHHHHHHHhCCeEEEEEeCCC--CHHHHHHHHhhCccCCCCcEEEEEeCcHH-HHHhcCCC-eEEE
Confidence 2 0011111 245778899999999999999 88899998854555588999999999999 88877666 8999
Q ss_pred cCCCCHHHHHHHHHhhhccccccccCCChHHHHHHHHHHHHcCCCchHHHHHHHHhcCCCCChHHHHHHHHHcc------
Q 001843 413 VPGLGKNESWELFLKKARIAEDVLQSRSSELIKLKKQILNICDGLPLRVVLLAGLLSTKQPSYEEWSKVIERAN------ 486 (1007)
Q Consensus 413 l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~g~~L~~~~~~~~~w~~~l~~l~------ 486 (1007)
++.|++++||+||+++||+... .++++++++++|+++|+|+||||+++|++|+.++ ..+|+.++.++.
T Consensus 348 v~~l~~~ea~~LF~~~Af~~~~----~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~k~--~~~W~~~l~~L~~~~~~~ 421 (1153)
T PLN03210 348 VCLPSNELALEMFCRSAFKKNS----PPDGFMELASEVALRAGNLPLGLNVLGSYLRGRD--KEDWMDMLPRLRNGLDGK 421 (1153)
T ss_pred ecCCCHHHHHHHHHHHhcCCCC----CcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCCC--HHHHHHHHHHHHhCccHH
Confidence 9999999999999999997643 3567899999999999999999999999999875 899999999887
Q ss_pred cchhhhhhhcCCcc-CchhhhhhhccCCCCcccchhHHHHHHHhcccCCCCCCccCCHHHHHHHHHHHHHhccceEEEee
Q 001843 487 GDNLVALCYQDLPA-QVKPCILYMGLFPREYEIPVRRLIHLWCAEGFAPPDLDLIASEEDLAEMYLEELVTRHMIQVIRW 565 (1007)
Q Consensus 487 i~~~l~~sy~~L~~-~~k~cfl~la~fp~~~~i~~~~Li~~Wiaeg~i~~~~~~~~~~e~~~~~~l~~Lv~rsll~~~~~ 565 (1007)
+..+|++||++|++ ..|.||+++|+||.+..++ .+..|++.+... ++..++.|+++||++...
T Consensus 422 I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~~---~v~~~l~~~~~~------------~~~~l~~L~~ksLi~~~~- 485 (1153)
T PLN03210 422 IEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKVN---DIKLLLANSDLD------------VNIGLKNLVDKSLIHVRE- 485 (1153)
T ss_pred HHHHHHHhhhccCccchhhhhheehhhcCCCCHH---HHHHHHHhcCCC------------chhChHHHHhcCCEEEcC-
Confidence 88999999999987 5999999999999987554 377788876551 233489999999998643
Q ss_pred cCCCCcceEEcCHHHHHHHHhhhhhcC-------eEEEecCCCCccc-ccCCCCCCCeEEEEEecCCCCCCC----CCcC
Q 001843 566 RLDGSPKTCCMPGVLYDILRPKAEDIG-------FLYHHHHPQRLNS-SAKSLPKFAVRRLAANLGSNSFPY----SSLL 633 (1007)
Q Consensus 566 ~~~g~~~~~~mHdlv~d~~~~~~~~e~-------f~~~~~~~~~~~~-~~~~~~~~~~r~Lsl~~~~~~~~~----~~~~ 633 (1007)
..+.|||++|++++.++.++. |+ ++...... ........+++.+++..+...... ....
T Consensus 486 ------~~~~MHdLl~~~~r~i~~~~~~~~~~r~~l---~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~~i~~~aF~~ 556 (1153)
T PLN03210 486 ------DIVEMHSLLQEMGKEIVRAQSNEPGEREFL---VDAKDICDVLEDNTGTKKVLGITLDIDEIDELHIHENAFKG 556 (1153)
T ss_pred ------CeEEhhhHHHHHHHHHHHhhcCCCCcceeE---eCHHHHHHHHHhCcccceeeEEEeccCccceeeecHHHHhc
Confidence 259999999999999987653 22 11111000 000114456788877655433211 1256
Q ss_pred CCcceEEEEeccccCCCCchhhhhhhccccccCCC-CcccEEEecCCCCCCcCCCccccCCCcCcEEecccCCCcccCcc
Q 001843 634 SWRLHSYLVFDSRIRGTPAKQIGIILGKCISKRRL-GMLKVLDLEGVYKPMLTNNNALGRLPFLEYLGLRSTFIDSLPDS 712 (1007)
Q Consensus 634 ~~~LRsL~l~~~~~~~~~~~~i~~~l~~~~~~~~l-~~Lr~L~Ls~~~l~~~~lp~~i~~L~~Lr~L~L~~n~i~~LP~~ 712 (1007)
+.+|+.|.+..+...... .+.-.++.-| ..+ ..||.|.+.++.+. .+|..+ .+.+|++|+|+++.+..+|..
T Consensus 557 m~~L~~L~~~~~~~~~~~--~~~~~lp~~~--~~lp~~Lr~L~~~~~~l~--~lP~~f-~~~~L~~L~L~~s~l~~L~~~ 629 (1153)
T PLN03210 557 MRNLLFLKFYTKKWDQKK--EVRWHLPEGF--DYLPPKLRLLRWDKYPLR--CMPSNF-RPENLVKLQMQGSKLEKLWDG 629 (1153)
T ss_pred CccccEEEEecccccccc--cceeecCcch--hhcCcccEEEEecCCCCC--CCCCcC-CccCCcEEECcCccccccccc
Confidence 788888887665321000 0000122223 333 34677777766666 666555 456666666666666666666
Q ss_pred cccCCCCCEEeecCC-ccccccc--cccccceecccccccccccccccccccCcCCCccccceeeCCCcccChHhhhcCC
Q 001843 713 TPILFCLATLDVSHT-KVQRLPY--AFWPSRHLYLNWIFLATNVFRHPQFVKWETSLQTLWGLCIKADEVQSLDYFRRLT 789 (1007)
Q Consensus 713 i~~L~~L~~L~L~~~-~l~~lP~--~i~~Lr~L~l~~~~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~l~~L~ 789 (1007)
+..+++|++|+|++| .+..+|. .+.+|++|++. +|.....+|..+++|++|+.|....+... ...+..+ .++
T Consensus 630 ~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~---~c~~L~~lp~si~~L~~L~~L~L~~c~~L-~~Lp~~i-~l~ 704 (1153)
T PLN03210 630 VHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLS---DCSSLVELPSSIQYLNKLEDLDMSRCENL-EILPTGI-NLK 704 (1153)
T ss_pred cccCCCCCEEECCCCCCcCcCCccccCCcccEEEec---CCCCccccchhhhccCCCCEEeCCCCCCc-CccCCcC-CCC
Confidence 666666666666665 4555553 12334666666 66555666666666666666654443332 1122222 455
Q ss_pred CCCeEEeeecCCCchhhHH----------------HHHHHhhcCCCCCeEEEeecCCCC------C-CcccccCCCCCcE
Q 001843 790 SLRKLGLKCSSTTSTSLKK----------------EIIGAVLQLSELHSLKLICETPSY------L-PLLEMAEHYKLQK 846 (1007)
Q Consensus 790 ~L~~L~l~~~~~~~~~l~~----------------~~~~~l~~l~~L~~L~L~~~~~~~------~-~~~~l~~~~~L~~ 846 (1007)
+|+.|.+++|. ....+++ .+|..+ .+++|++|.+....... . .......+++|+.
T Consensus 705 sL~~L~Lsgc~-~L~~~p~~~~nL~~L~L~~n~i~~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~ 782 (1153)
T PLN03210 705 SLYRLNLSGCS-RLKSFPDISTNISWLDLDETAIEEFPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTR 782 (1153)
T ss_pred CCCEEeCCCCC-CccccccccCCcCeeecCCCccccccccc-cccccccccccccchhhccccccccchhhhhccccchh
Confidence 66666666553 1111110 011111 23444444443311000 0 0001112457888
Q ss_pred EEecccC--CCCCcCccCCCCCCceEEEEEeeecCCCCcCccccCCCCcEEEeecCCcCCCceeecCCCCCCCcEEEecc
Q 001843 847 LYLSGHL--PPNSVIGDRSFPPNVVTLTLSQLRLEYDPMPILGRLRQLKILRLFGGSYTGEEMSCSSGEFPNLLVLKLWK 924 (1007)
Q Consensus 847 L~L~g~~--~~lp~~~i~~~l~~L~~L~L~~~~l~~~~~~~l~~Lp~L~~L~L~~~~~~~~~l~~~~~~fp~L~~L~L~~ 924 (1007)
|+|+++. ..+|. ++.. +++|+.|+|++|..... +|....+++|+.|+|++|... ..++ ...++|+.|+|++
T Consensus 783 L~Ls~n~~l~~lP~-si~~-L~~L~~L~Ls~C~~L~~-LP~~~~L~sL~~L~Ls~c~~L-~~~p---~~~~nL~~L~Ls~ 855 (1153)
T PLN03210 783 LFLSDIPSLVELPS-SIQN-LHKLEHLEIENCINLET-LPTGINLESLESLDLSGCSRL-RTFP---DISTNISDLNLSR 855 (1153)
T ss_pred eeCCCCCCccccCh-hhhC-CCCCCEEECCCCCCcCe-eCCCCCccccCEEECCCCCcc-cccc---ccccccCEeECCC
Confidence 8888764 66787 7777 88888888888753322 333336788888888854332 2222 2245788888886
Q ss_pred CCCCcceEEcCCCCccccEeEeeccCCCC-CCcCccccccCccEEEeccCCc
Q 001843 925 LNRLRQWRIKEGAMPCLRQLEIRSCGYLV-PPTGLKHVTSSLREFLLTNMPS 975 (1007)
Q Consensus 925 ~~~L~~l~~~~~~~p~L~~L~l~~c~~L~-lp~~l~~L~~~L~~L~l~~c~~ 975 (1007)
+.++.+|...+.+++|+.|++.+|++|+ +|..+..+ ++|+.|++++|+.
T Consensus 856 -n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L-~~L~~L~l~~C~~ 905 (1153)
T PLN03210 856 -TGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKL-KHLETVDFSDCGA 905 (1153)
T ss_pred -CCCccChHHHhcCCCCCEEECCCCCCcCccCcccccc-cCCCeeecCCCcc
Confidence 4677777777789999999999999999 88888889 9999999999964
No 3
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=8e-42 Score=377.18 Aligned_cols=250 Identities=31% Similarity=0.545 Sum_probs=207.9
Q ss_pred EEEEEEcCCCChHHHHHHHHHhhhhcccCCCceEEEEecCCCCCCHHHHHHHHHHHHhhhhhhhccccCHHHHHHHHHHH
Q 001843 274 QVIALIGKAGSGKTTLARIVYNRVYVKRHFTKRAWVHIPIMSMVEDRDVLADILKQIDESLLKVEATLSAEELMWRITQA 353 (1007)
Q Consensus 274 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~l~~il~~l~~~~~~~~~~~~~~~l~~~l~~~ 353 (1007)
++|+|+||||+||||||+++|++..++.+|+.++|+.++ ...+..+++..|+.+++..........+.......+++.
T Consensus 20 ~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~--~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~ 97 (287)
T PF00931_consen 20 RVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLS--KNPSLEQLLEQILRQLGEPDSSISDPKDIEELQDQLREL 97 (287)
T ss_dssp EEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEE--S-SCCHHHHHHHHHHHTCC-STSSCCSSHHHHHHHHHHH
T ss_pred EEEEEEcCCcCCcceeeeecccccccccccccccccccc--cccccccccccccccccccccccccccccccccccchhh
Confidence 999999999999999999999987799999999999999 888889999999999987621122456788899999999
Q ss_pred cCCCcEEEEEeCcCccCchhhhhhc-cccCCCCCCcEEEEEcCCCcccccccCCcceeeecCCCCHHHHHHHHHhhhccc
Q 001843 354 LDDSTFLIVMENAEHQKSQVWDSFL-GKLCSFTQCGKIIITTSSTEDFVEPLGAAFSTLHVPGLGKNESWELFLKKARIA 432 (1007)
Q Consensus 354 L~~kr~LlVlDdv~~~~~~~~~~l~-~l~~~~~~gs~IliTTR~~~~va~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~ 432 (1007)
|+++++|||||||| +...|+.+. .++.. ..|++||||||+.. ++..+......+++++|+++||++||.+.++..
T Consensus 98 L~~~~~LlVlDdv~--~~~~~~~l~~~~~~~-~~~~kilvTTR~~~-v~~~~~~~~~~~~l~~L~~~ea~~L~~~~~~~~ 173 (287)
T PF00931_consen 98 LKDKRCLLVLDDVW--DEEDLEELREPLPSF-SSGSKILVTTRDRS-VAGSLGGTDKVIELEPLSEEEALELFKKRAGRK 173 (287)
T ss_dssp HCCTSEEEEEEEE---SHHHH-------HCH-HSS-EEEEEESCGG-GGTTHHSCEEEEECSS--HHHHHHHHHHHHTSH
T ss_pred hccccceeeeeeec--ccccccccccccccc-cccccccccccccc-ccccccccccccccccccccccccccccccccc
Confidence 99999999999999 888999998 77666 78999999999998 888776533899999999999999999999876
Q ss_pred cccccCCChHHHHHHHHHHHHcCCCchHHHHHHHHhcCCCCChHHHHHHHHHcc------------cchhhhhhhcCCcc
Q 001843 433 EDVLQSRSSELIKLKKQILNICDGLPLRVVLLAGLLSTKQPSYEEWSKVIERAN------------GDNLVALCYQDLPA 500 (1007)
Q Consensus 433 ~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~g~~L~~~~~~~~~w~~~l~~l~------------i~~~l~~sy~~L~~ 500 (1007)
.. ...+..++.+++|+++|+|+||||+++|++|+.+. +..+|+.+++.+. +..++.+||+.||+
T Consensus 174 ~~---~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~-~~~~w~~~~~~l~~~~~~~~~~~~~~~~~l~~s~~~L~~ 249 (287)
T PF00931_consen 174 ES---ESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKS-TVDEWEEALEELENSLRESRDYDRSVFSALELSYDSLPD 249 (287)
T ss_dssp S-------TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHH-SSSSHHHHHHHHHHCHTCSSGSCHHHHHHHHHHHHSSHT
T ss_pred cc---ccccccccccccccccccccccccccccccccccc-cccccccccccccccccccccccccccccceechhcCCc
Confidence 51 22345567899999999999999999999997665 3788999887654 78899999999999
Q ss_pred CchhhhhhhccCCCCcccchhHHHHHHHhcccC
Q 001843 501 QVKPCILYMGLFPREYEIPVRRLIHLWCAEGFA 533 (1007)
Q Consensus 501 ~~k~cfl~la~fp~~~~i~~~~Li~~Wiaeg~i 533 (1007)
++|+||+|||+||+++.|+++.|+++|+++|||
T Consensus 250 ~~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i 282 (287)
T PF00931_consen 250 ELRRCFLYLSIFPEGVPIPRERLIRLWVAEGFI 282 (287)
T ss_dssp CCHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHT
T ss_pred cHHHHHhhCcCCCCCceECHHHHHHHHHHCCCC
Confidence 999999999999999999999999999999999
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.91 E-value=4e-24 Score=275.63 Aligned_cols=337 Identities=21% Similarity=0.158 Sum_probs=163.8
Q ss_pred CCeEEEEEecCCCCCCCCCcCCCcceEEEEeccccCCCCchhhhhhhccccccCCCCcccEEEecCCCCCCcCCCccccC
Q 001843 613 FAVRRLAANLGSNSFPYSSLLSWRLHSYLVFDSRIRGTPAKQIGIILGKCISKRRLGMLKVLDLEGVYKPMLTNNNALGR 692 (1007)
Q Consensus 613 ~~~r~Lsl~~~~~~~~~~~~~~~~LRsL~l~~~~~~~~~~~~i~~~l~~~~~~~~l~~Lr~L~Ls~~~l~~~~lp~~i~~ 692 (1007)
.++|+|.+.++..........+++|++|.+.+|.+.. .++..+ .++++|++|+|++|.+.+ .+|..+++
T Consensus 118 ~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~--------~~p~~~--~~l~~L~~L~L~~n~l~~-~~p~~~~~ 186 (968)
T PLN00113 118 SSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSG--------EIPNDI--GSFSSLKVLDLGGNVLVG-KIPNSLTN 186 (968)
T ss_pred CCCCEEECcCCccccccCccccCCCCEEECcCCcccc--------cCChHH--hcCCCCCEEECccCcccc-cCChhhhh
Confidence 3455555555543322222345556666666555421 233334 566666666666666543 45556666
Q ss_pred CCcCcEEecccCCCc-ccCcccccCCCCCEEeecCCccc-ccccccccc---ceecccccccccccccccccccCcCCCc
Q 001843 693 LPFLEYLGLRSTFID-SLPDSTPILFCLATLDVSHTKVQ-RLPYAFWPS---RHLYLNWIFLATNVFRHPQFVKWETSLQ 767 (1007)
Q Consensus 693 L~~Lr~L~L~~n~i~-~LP~~i~~L~~L~~L~L~~~~l~-~lP~~i~~L---r~L~l~~~~~~~~~~~~p~~i~~L~~L~ 767 (1007)
+++|++|+|++|.+. .+|..++++++|++|+|++|.+. .+|..+.++ ++|+++ +|.....+|..++++++|+
T Consensus 187 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~---~n~l~~~~p~~l~~l~~L~ 263 (968)
T PLN00113 187 LTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLV---YNNLTGPIPSSLGNLKNLQ 263 (968)
T ss_pred CcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECc---CceeccccChhHhCCCCCC
Confidence 666666666666554 45666666666666666666544 455444433 566665 5544445555566666666
Q ss_pred cccceeeCCCcccChHhhhcCCCCCeEEeeecCCCchhhHHHHHHHhhcCCCCCeEEEeecCCCCCCcccccCCCCCcEE
Q 001843 768 TLWGLCIKADEVQSLDYFRRLTSLRKLGLKCSSTTSTSLKKEIIGAVLQLSELHSLKLICETPSYLPLLEMAEHYKLQKL 847 (1007)
Q Consensus 768 ~L~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L 847 (1007)
+|....+. ..+..+..++.+++|+.|+++++. ....+ |..+.++++|+.|+++++......+..+..+++|+.|
T Consensus 264 ~L~L~~n~-l~~~~p~~l~~l~~L~~L~Ls~n~-l~~~~----p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L 337 (968)
T PLN00113 264 YLFLYQNK-LSGPIPPSIFSLQKLISLDLSDNS-LSGEI----PELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVL 337 (968)
T ss_pred EEECcCCe-eeccCchhHhhccCcCEEECcCCe-eccCC----ChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEE
Confidence 55332221 112344455555666666665543 11112 2444555555555555544333334444455555555
Q ss_pred EecccC--CCCCcCccCCCCCCceEEEEEeeecCCCCcCccc------------------------cCCCCcEEEeecCC
Q 001843 848 YLSGHL--PPNSVIGDRSFPPNVVTLTLSQLRLEYDPMPILG------------------------RLRQLKILRLFGGS 901 (1007)
Q Consensus 848 ~L~g~~--~~lp~~~i~~~l~~L~~L~L~~~~l~~~~~~~l~------------------------~Lp~L~~L~L~~~~ 901 (1007)
+++++. ..+|. ++.. +++|+.|+|++|.+....+..+. .+++|+.|+|++|.
T Consensus 338 ~L~~n~l~~~~p~-~l~~-~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~ 415 (968)
T PLN00113 338 QLWSNKFSGEIPK-NLGK-HNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNS 415 (968)
T ss_pred ECcCCCCcCcCCh-HHhC-CCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCE
Confidence 555544 33444 4444 45555555555544333333333 34444444444333
Q ss_pred cCCCceeecCCCCCCCcEEEeccCCCCcceEEcCCCCccccEeEeeccCCCC-CCcCccccccCccEEEeccCC
Q 001843 902 YTGEEMSCSSGEFPNLLVLKLWKLNRLRQWRIKEGAMPCLRQLEIRSCGYLV-PPTGLKHVTSSLREFLLTNMP 974 (1007)
Q Consensus 902 ~~~~~l~~~~~~fp~L~~L~L~~~~~L~~l~~~~~~~p~L~~L~l~~c~~L~-lp~~l~~L~~~L~~L~l~~c~ 974 (1007)
+.+ .++.....+++|+.|+++++.-...++.....+++|+.|++++|.... +|..+ .. ++|+.|++++|.
T Consensus 416 l~~-~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~-~~-~~L~~L~ls~n~ 486 (968)
T PLN00113 416 FSG-ELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSF-GS-KRLENLDLSRNQ 486 (968)
T ss_pred eee-ECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCccc-cc-ccceEEECcCCc
Confidence 221 122222334444444444432222222222345556666666554333 44432 34 556666666553
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.90 E-value=1.7e-23 Score=269.82 Aligned_cols=339 Identities=18% Similarity=0.121 Sum_probs=166.5
Q ss_pred CeEEEEEecCCCCCCC--CCcCCCcceEEEEeccccCCCCchhhhhhhccccccCCCCcccEEEecCCCCCC--------
Q 001843 614 AVRRLAANLGSNSFPY--SSLLSWRLHSYLVFDSRIRGTPAKQIGIILGKCISKRRLGMLKVLDLEGVYKPM-------- 683 (1007)
Q Consensus 614 ~~r~Lsl~~~~~~~~~--~~~~~~~LRsL~l~~~~~~~~~~~~i~~~l~~~~~~~~l~~Lr~L~Ls~~~l~~-------- 683 (1007)
.++.|.+..+...... ....+++|++|.+.+|.+.+ . ++..+| .++++|++|+|++|.+.+
T Consensus 70 ~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~---~----ip~~~~--~~l~~L~~L~Ls~n~l~~~~p~~~l~ 140 (968)
T PLN00113 70 RVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSG---P----IPDDIF--TTSSSLRYLNLSNNNFTGSIPRGSIP 140 (968)
T ss_pred cEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCC---c----CChHHh--ccCCCCCEEECcCCccccccCccccC
Confidence 4556666554432211 12445666666666655421 0 222333 455555555555555442
Q ss_pred -------------cCCCccccCCCcCcEEecccCCCc-ccCcccccCCCCCEEeecCCccc-ccccccccc---ceeccc
Q 001843 684 -------------LTNNNALGRLPFLEYLGLRSTFID-SLPDSTPILFCLATLDVSHTKVQ-RLPYAFWPS---RHLYLN 745 (1007)
Q Consensus 684 -------------~~lp~~i~~L~~Lr~L~L~~n~i~-~LP~~i~~L~~L~~L~L~~~~l~-~lP~~i~~L---r~L~l~ 745 (1007)
..+|..++++.+|++|+|++|.+. .+|..++++++|++|+|++|.+. .+|..++++ ++|++.
T Consensus 141 ~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~ 220 (968)
T PLN00113 141 NLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLG 220 (968)
T ss_pred CCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECc
Confidence 034444445555555555554443 44444555555555555544333 334333332 444444
Q ss_pred ccccccccccccccccCcCCCccccceeeCCCcccChHhhhcCCCCCeEEeeecCCCchhhHHHHHHHhhcCCCCCeEEE
Q 001843 746 WIFLATNVFRHPQFVKWETSLQTLWGLCIKADEVQSLDYFRRLTSLRKLGLKCSSTTSTSLKKEIIGAVLQLSELHSLKL 825 (1007)
Q Consensus 746 ~~~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~l~~~~~~~l~~l~~L~~L~L 825 (1007)
+|.....+|..++++++|++|+...+. ..+..+..++.+++|+.|++.++. -...+ |..+..+++|+.|++
T Consensus 221 ---~n~l~~~~p~~l~~l~~L~~L~L~~n~-l~~~~p~~l~~l~~L~~L~L~~n~-l~~~~----p~~l~~l~~L~~L~L 291 (968)
T PLN00113 221 ---YNNLSGEIPYEIGGLTSLNHLDLVYNN-LTGPIPSSLGNLKNLQYLFLYQNK-LSGPI----PPSIFSLQKLISLDL 291 (968)
T ss_pred ---CCccCCcCChhHhcCCCCCEEECcCce-eccccChhHhCCCCCCEEECcCCe-eeccC----chhHhhccCcCEEEC
Confidence 343333444444555555544322221 112234444555555555554443 11111 244445555555555
Q ss_pred eecCCCCCCcccccCCCCCcEEEecccC--CCCCcCccCCCCCCceEEEEEeeecCCCCcCccccCCCCcEEEeecCCcC
Q 001843 826 ICETPSYLPLLEMAEHYKLQKLYLSGHL--PPNSVIGDRSFPPNVVTLTLSQLRLEYDPMPILGRLRQLKILRLFGGSYT 903 (1007)
Q Consensus 826 ~~~~~~~~~~~~l~~~~~L~~L~L~g~~--~~lp~~~i~~~l~~L~~L~L~~~~l~~~~~~~l~~Lp~L~~L~L~~~~~~ 903 (1007)
+++......+..+..+++|+.|+++++. ..+|. ++.. +++|+.|+|++|.+....+..++.+++|+.|+|++|...
T Consensus 292 s~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~-~~~~-l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~ 369 (968)
T PLN00113 292 SDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPV-ALTS-LPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLT 369 (968)
T ss_pred cCCeeccCCChhHcCCCCCcEEECCCCccCCcCCh-hHhc-CCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeE
Confidence 5444333233444455555555555544 33444 4444 555555555555554444444555555555555544332
Q ss_pred CCceeecCCCCCCCcEEEeccCCCCcceEEcCCCCccccEeEeeccCCCC-CCcCccccccCccEEEeccCC
Q 001843 904 GEEMSCSSGEFPNLLVLKLWKLNRLRQWRIKEGAMPCLRQLEIRSCGYLV-PPTGLKHVTSSLREFLLTNMP 974 (1007)
Q Consensus 904 ~~~l~~~~~~fp~L~~L~L~~~~~L~~l~~~~~~~p~L~~L~l~~c~~L~-lp~~l~~L~~~L~~L~l~~c~ 974 (1007)
+ .++.....+++|+.|.+.+++-...++...+.+++|+.|++.+|.... +|..+..+ ++|+.|++++|.
T Consensus 370 ~-~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l-~~L~~L~Ls~N~ 439 (968)
T PLN00113 370 G-EIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKL-PLVYFLDISNNN 439 (968)
T ss_pred e-eCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcC-CCCCEEECcCCc
Confidence 2 222223345556666666543333334444567888888888865444 77778888 888888888774
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.90 E-value=2.9e-26 Score=251.32 Aligned_cols=340 Identities=17% Similarity=0.100 Sum_probs=272.1
Q ss_pred CCCCeEEEEEecCCCCCCCC-CcCCCcceEEEEeccccCCCCchhhhhhhccccccCCCCcccEEEecCCCCCCcCCCcc
Q 001843 611 PKFAVRRLAANLGSNSFPYS-SLLSWRLHSYLVFDSRIRGTPAKQIGIILGKCISKRRLGMLKVLDLEGVYKPMLTNNNA 689 (1007)
Q Consensus 611 ~~~~~r~Lsl~~~~~~~~~~-~~~~~~LRsL~l~~~~~~~~~~~~i~~~l~~~~~~~~l~~Lr~L~Ls~~~l~~~~lp~~ 689 (1007)
....++.|.+........++ ...+.+|..|.+..|... .+.+-+ +.++.||.+++..|++....+|..
T Consensus 30 qMt~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~---------~vhGEL--s~Lp~LRsv~~R~N~LKnsGiP~d 98 (1255)
T KOG0444|consen 30 QMTQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLI---------SVHGEL--SDLPRLRSVIVRDNNLKNSGIPTD 98 (1255)
T ss_pred HhhheeEEEechhhhhhChHHHHHHhhhhhhhhhhhhhH---------hhhhhh--ccchhhHHHhhhccccccCCCCch
Confidence 34557777777766555543 366788888888887764 233445 888999999999999887678999
Q ss_pred ccCCCcCcEEecccCCCcccCcccccCCCCCEEeecCCccccccccc-ccc---ceecccccccccccccccccccCcCC
Q 001843 690 LGRLPFLEYLGLRSTFIDSLPDSTPILFCLATLDVSHTKVQRLPYAF-WPS---RHLYLNWIFLATNVFRHPQFVKWETS 765 (1007)
Q Consensus 690 i~~L~~Lr~L~L~~n~i~~LP~~i~~L~~L~~L~L~~~~l~~lP~~i-~~L---r~L~l~~~~~~~~~~~~p~~i~~L~~ 765 (1007)
|.+|..|..|+|++|++++.|..+.+-+++-+|+|++|+|..+|..+ .+| -.|+++ .+. ...+|+.+..|..
T Consensus 99 iF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS---~Nr-Le~LPPQ~RRL~~ 174 (1255)
T KOG0444|consen 99 IFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLS---NNR-LEMLPPQIRRLSM 174 (1255)
T ss_pred hcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccc---cch-hhhcCHHHHHHhh
Confidence 99999999999999999999999989999999999999999998753 334 777888 554 6688888999999
Q ss_pred CccccceeeCCCcccChHhhhcCCCCCeEEeeecCCCchhhHHHHHHHhhcCCCCCeEEEeecCCCCCCcccccCCCCCc
Q 001843 766 LQTLWGLCIKADEVQSLDYFRRLTSLRKLGLKCSSTTSTSLKKEIIGAVLQLSELHSLKLICETPSYLPLLEMAEHYKLQ 845 (1007)
Q Consensus 766 L~~L~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~~~~L~ 845 (1007)
|++|...... .....+..+..++.|..|.+++..... ..+|.++..+.+|..++++.|.... .++.+..+++|+
T Consensus 175 LqtL~Ls~NP-L~hfQLrQLPsmtsL~vLhms~TqRTl----~N~Ptsld~l~NL~dvDlS~N~Lp~-vPecly~l~~Lr 248 (1255)
T KOG0444|consen 175 LQTLKLSNNP-LNHFQLRQLPSMTSLSVLHMSNTQRTL----DNIPTSLDDLHNLRDVDLSENNLPI-VPECLYKLRNLR 248 (1255)
T ss_pred hhhhhcCCCh-hhHHHHhcCccchhhhhhhcccccchh----hcCCCchhhhhhhhhccccccCCCc-chHHHhhhhhhh
Confidence 9998443222 212344455566667777777654222 3344889999999999999987776 788899999999
Q ss_pred EEEecccC-CCCCcCccCCCCCCceEEEEEeeecCCCCcCccccCCCCcEEEeecCCcCCCceeecCCCCCCCcEEEecc
Q 001843 846 KLYLSGHL-PPNSVIGDRSFPPNVVTLTLSQLRLEYDPMPILGRLRQLKILRLFGGSYTGEEMSCSSGEFPNLLVLKLWK 924 (1007)
Q Consensus 846 ~L~L~g~~-~~lp~~~i~~~l~~L~~L~L~~~~l~~~~~~~l~~Lp~L~~L~L~~~~~~~~~l~~~~~~fp~L~~L~L~~ 924 (1007)
.|+|++|. +++.. .... ..+|++|+|+.|+++ ..+..+.+|+.|+.|.+.+|...-+.++...+.+.+|+.+...+
T Consensus 249 rLNLS~N~iteL~~-~~~~-W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aan 325 (1255)
T KOG0444|consen 249 RLNLSGNKITELNM-TEGE-WENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAAN 325 (1255)
T ss_pred eeccCcCceeeeec-cHHH-Hhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhc
Confidence 99999988 77765 5566 789999999999985 56778899999999999988888888999999999999999997
Q ss_pred CCCCcceEEcCCCCccccEeEeeccCCCC-CCcCccccccCccEEEeccCCccc
Q 001843 925 LNRLRQWRIKEGAMPCLRQLEIRSCGYLV-PPTGLKHVTSSLREFLLTNMPSTF 977 (1007)
Q Consensus 925 ~~~L~~l~~~~~~~p~L~~L~l~~c~~L~-lp~~l~~L~~~L~~L~l~~c~~~~ 977 (1007)
+.|+-+|.....|+.|+.|.++. +.|- +|++|.-| +.|+.|++..+|+.+
T Consensus 326 -N~LElVPEglcRC~kL~kL~L~~-NrLiTLPeaIHlL-~~l~vLDlreNpnLV 376 (1255)
T KOG0444|consen 326 -NKLELVPEGLCRCVKLQKLKLDH-NRLITLPEAIHLL-PDLKVLDLRENPNLV 376 (1255)
T ss_pred -cccccCchhhhhhHHHHHhcccc-cceeechhhhhhc-CCcceeeccCCcCcc
Confidence 67888888778899999999985 6666 99999999 999999999999775
No 7
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.86 E-value=3.1e-24 Score=235.54 Aligned_cols=318 Identities=21% Similarity=0.145 Sum_probs=256.3
Q ss_pred CCeEEEEEecCCCC-CCCCCcCCCcceEEEEeccccCCCCchhhhhhhccccccCCCCcccEEEecCCCCCCcCCCcccc
Q 001843 613 FAVRRLAANLGSNS-FPYSSLLSWRLHSYLVFDSRIRGTPAKQIGIILGKCISKRRLGMLKVLDLEGVYKPMLTNNNALG 691 (1007)
Q Consensus 613 ~~~r~Lsl~~~~~~-~~~~~~~~~~LRsL~l~~~~~~~~~~~~i~~~l~~~~~~~~l~~Lr~L~Ls~~~l~~~~lp~~i~ 691 (1007)
.++.||++..|... ...+...++.||++++..|.....- +++++| ++..|.+||||+|++. +.|..+.
T Consensus 55 qkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKnsG------iP~diF---~l~dLt~lDLShNqL~--EvP~~LE 123 (1255)
T KOG0444|consen 55 QKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKNSG------IPTDIF---RLKDLTILDLSHNQLR--EVPTNLE 123 (1255)
T ss_pred hhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccccCC------CCchhc---ccccceeeecchhhhh--hcchhhh
Confidence 56788888877643 4445688999999999999884211 556665 8999999999999999 9999999
Q ss_pred CCCcCcEEecccCCCcccCcc-cccCCCCCEEeecCCcccccccccccc---ceecccccccccccccccccccCcCCCc
Q 001843 692 RLPFLEYLGLRSTFIDSLPDS-TPILFCLATLDVSHTKVQRLPYAFWPS---RHLYLNWIFLATNVFRHPQFVKWETSLQ 767 (1007)
Q Consensus 692 ~L~~Lr~L~L~~n~i~~LP~~-i~~L~~L~~L~L~~~~l~~lP~~i~~L---r~L~l~~~~~~~~~~~~p~~i~~L~~L~ 767 (1007)
+-+++-+|+|++|+|.+||.+ +-+|..|-+|||++|.+..+|+.+.+| +.|.++ ++.....-...+..|++|+
T Consensus 124 ~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls---~NPL~hfQLrQLPsmtsL~ 200 (1255)
T KOG0444|consen 124 YAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLS---NNPLNHFQLRQLPSMTSLS 200 (1255)
T ss_pred hhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcC---CChhhHHHHhcCccchhhh
Confidence 999999999999999999987 468999999999999999999987777 889998 6543222223355678888
Q ss_pred cccceeeCCCcccChHhhhcCCCCCeEEeeecCCCchhhHHHHHHHhhcCCCCCeEEEeecCCCCCCcccccCCCCCcEE
Q 001843 768 TLWGLCIKADEVQSLDYFRRLTSLRKLGLKCSSTTSTSLKKEIIGAVLQLSELHSLKLICETPSYLPLLEMAEHYKLQKL 847 (1007)
Q Consensus 768 ~L~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L 847 (1007)
+|......+.-...+.++..|.||+.++++.+. ...++ ..+-++.+|+.|+|++|.... .-.....-.+|+.|
T Consensus 201 vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~--Lp~vP----ecly~l~~LrrLNLS~N~ite-L~~~~~~W~~lEtL 273 (1255)
T KOG0444|consen 201 VLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENN--LPIVP----ECLYKLRNLRRLNLSGNKITE-LNMTEGEWENLETL 273 (1255)
T ss_pred hhhcccccchhhcCCCchhhhhhhhhccccccC--CCcch----HHHhhhhhhheeccCcCceee-eeccHHHHhhhhhh
Confidence 886666655545578889999999999999876 55566 888999999999999976543 11222334589999
Q ss_pred EecccC-CCCCcCccCCCCCCceEEEEEeeecCCCCc-CccccCCCCcEEEeecCCcCCCceeecCCCCCCCcEEEeccC
Q 001843 848 YLSGHL-PPNSVIGDRSFPPNVVTLTLSQLRLEYDPM-PILGRLRQLKILRLFGGSYTGEEMSCSSGEFPNLLVLKLWKL 925 (1007)
Q Consensus 848 ~L~g~~-~~lp~~~i~~~l~~L~~L~L~~~~l~~~~~-~~l~~Lp~L~~L~L~~~~~~~~~l~~~~~~fp~L~~L~L~~~ 925 (1007)
+|+.|. ..+|. .+.. ++.|++|.+.+|++.-..+ +.+|+|.+|+.+...+|.. +..+.+...+++|+.|.|++
T Consensus 274 NlSrNQLt~LP~-avcK-L~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~L--ElVPEglcRC~kL~kL~L~~- 348 (1255)
T KOG0444|consen 274 NLSRNQLTVLPD-AVCK-LTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKL--ELVPEGLCRCVKLQKLKLDH- 348 (1255)
T ss_pred ccccchhccchH-HHhh-hHHHHHHHhccCcccccCCccchhhhhhhHHHHhhcccc--ccCchhhhhhHHHHHhcccc-
Confidence 999988 89998 8888 9999999999998865544 4589999999999985544 34566677899999999995
Q ss_pred CCCcceEEcCCCCccccEeEeeccCCCCCCc
Q 001843 926 NRLRQWRIKEGAMPCLRQLEIRSCGYLVPPT 956 (1007)
Q Consensus 926 ~~L~~l~~~~~~~p~L~~L~l~~c~~L~lp~ 956 (1007)
+.|-.+|....-+|.|+.|++..+++|..|.
T Consensus 349 NrLiTLPeaIHlL~~l~vLDlreNpnLVMPP 379 (1255)
T KOG0444|consen 349 NRLITLPEAIHLLPDLKVLDLRENPNLVMPP 379 (1255)
T ss_pred cceeechhhhhhcCCcceeeccCCcCccCCC
Confidence 6777788777779999999999999999443
No 8
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.84 E-value=2e-22 Score=220.73 Aligned_cols=347 Identities=18% Similarity=0.140 Sum_probs=246.0
Q ss_pred CCCeEEEEEecCCCCCCCCC-cCCCcceEEEEeccccCCCCchhhhhhhccccccCCCCcccEEEecCCCCCCcCCC-cc
Q 001843 612 KFAVRRLAANLGSNSFPYSS-LLSWRLHSYLVFDSRIRGTPAKQIGIILGKCISKRRLGMLKVLDLEGVYKPMLTNN-NA 689 (1007)
Q Consensus 612 ~~~~r~Lsl~~~~~~~~~~~-~~~~~LRsL~l~~~~~~~~~~~~i~~~l~~~~~~~~l~~Lr~L~Ls~~~l~~~~lp-~~ 689 (1007)
..+...+.+..|....++.. ....+|..|.+.+|.+.... ...+ +-++.||+||||.|.+. .+| .+
T Consensus 101 l~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~--------se~L--~~l~alrslDLSrN~is--~i~~~s 168 (873)
T KOG4194|consen 101 LPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVT--------SEEL--SALPALRSLDLSRNLIS--EIPKPS 168 (873)
T ss_pred CCcceeeeeccchhhhcccccccccceeEEeeecccccccc--------HHHH--HhHhhhhhhhhhhchhh--cccCCC
Confidence 34566666666665544443 44567888888888775322 2334 77888999999999988 666 34
Q ss_pred ccCCCcCcEEecccCCCcccC-cccccCCCCCEEeecCCccccccccccc-c---ceecccccccccccccccccccCcC
Q 001843 690 LGRLPFLEYLGLRSTFIDSLP-DSTPILFCLATLDVSHTKVQRLPYAFWP-S---RHLYLNWIFLATNVFRHPQFVKWET 764 (1007)
Q Consensus 690 i~~L~~Lr~L~L~~n~i~~LP-~~i~~L~~L~~L~L~~~~l~~lP~~i~~-L---r~L~l~~~~~~~~~~~~p~~i~~L~ 764 (1007)
+..-.++++|+|++|.|+.+- ..|.+|.+|-+|.|++|.++.+|.-..+ | +.|++. .+.....--..|..|.
T Consensus 169 fp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLn---rN~irive~ltFqgL~ 245 (873)
T KOG4194|consen 169 FPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLN---RNRIRIVEGLTFQGLP 245 (873)
T ss_pred CCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhcc---ccceeeehhhhhcCch
Confidence 666788999999999998875 4688888999999999999999875433 5 777877 5543222223467777
Q ss_pred CCccccceeeCCCcccChHhhhcCCCCCeEEeeecCCCchhhHHHHHHHhhcCCCCCeEEEeecCCCCCCcccccCCCCC
Q 001843 765 SLQTLWGLCIKADEVQSLDYFRRLTSLRKLGLKCSSTTSTSLKKEIIGAVLQLSELHSLKLICETPSYLPLLEMAEHYKL 844 (1007)
Q Consensus 765 ~L~~L~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~~~~L 844 (1007)
+|+.|..-. ++.+...-..+..+.+++.|++..+. ...+.+ .++-+++.|+.|++++|.......++++-+++|
T Consensus 246 Sl~nlklqr-N~I~kL~DG~Fy~l~kme~l~L~~N~--l~~vn~---g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL 319 (873)
T KOG4194|consen 246 SLQNLKLQR-NDISKLDDGAFYGLEKMEHLNLETNR--LQAVNE---GWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKL 319 (873)
T ss_pred hhhhhhhhh-cCcccccCcceeeecccceeecccch--hhhhhc---ccccccchhhhhccchhhhheeecchhhhcccc
Confidence 777774322 22212233346678888999998776 333332 667788999999999987766677888888999
Q ss_pred cEEEecccC-CCCCcCccCCCCCCceEEEEEeeecCCCCcCccccCCCCcEEEeecCCcCC--CceeecCCCCCCCcEEE
Q 001843 845 QKLYLSGHL-PPNSVIGDRSFPPNVVTLTLSQLRLEYDPMPILGRLRQLKILRLFGGSYTG--EEMSCSSGEFPNLLVLK 921 (1007)
Q Consensus 845 ~~L~L~g~~-~~lp~~~i~~~l~~L~~L~L~~~~l~~~~~~~l~~Lp~L~~L~L~~~~~~~--~~l~~~~~~fp~L~~L~ 921 (1007)
+.|+|+.|. .++++..+.. ++.|+.|.|+.|.+....-..|..+.+|+.|+|+.|.... ++-...+.++|+|+.|.
T Consensus 320 ~~LdLs~N~i~~l~~~sf~~-L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~ 398 (873)
T KOG4194|consen 320 KELDLSSNRITRLDEGSFRV-LSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLR 398 (873)
T ss_pred eeEeccccccccCChhHHHH-HHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhhee
Confidence 999999877 8887745666 8899999999998866666678889999999998775432 12223345689999999
Q ss_pred eccCCCCcceEEcC-CCCccccEeEeeccCCCC-CCcCccccccCccEEEec------cCCccccccccccc
Q 001843 922 LWKLNRLRQWRIKE-GAMPCLRQLEIRSCGYLV-PPTGLKHVTSSLREFLLT------NMPSTFGSVADIER 985 (1007)
Q Consensus 922 L~~~~~L~~l~~~~-~~~p~L~~L~l~~c~~L~-lp~~l~~L~~~L~~L~l~------~c~~~~~~~~~~~~ 985 (1007)
|.+ ++++.++-.. ..+++|+.|++.+++-.. -|..+..+ .|++|.+. +|.-.| ...|-.
T Consensus 399 l~g-Nqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m--~Lk~Lv~nSssflCDCql~W--l~qWl~ 465 (873)
T KOG4194|consen 399 LTG-NQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM--ELKELVMNSSSFLCDCQLKW--LAQWLY 465 (873)
T ss_pred ecC-ceeeecchhhhccCcccceecCCCCcceeecccccccc--hhhhhhhcccceEEeccHHH--HHHHHH
Confidence 998 6788887543 358899999999876555 66666664 67777654 565555 454443
No 9
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.83 E-value=1.8e-21 Score=213.38 Aligned_cols=323 Identities=21% Similarity=0.162 Sum_probs=185.6
Q ss_pred CCcceEEEEeccccCCCCchhhhhhhccccccCCCCcccEEEecCCCCCCcCCCccccCCCcCcEEecccCCCcccC-cc
Q 001843 634 SWRLHSYLVFDSRIRGTPAKQIGIILGKCISKRRLGMLKVLDLEGVYKPMLTNNNALGRLPFLEYLGLRSTFIDSLP-DS 712 (1007)
Q Consensus 634 ~~~LRsL~l~~~~~~~~~~~~i~~~l~~~~~~~~l~~Lr~L~Ls~~~l~~~~lp~~i~~L~~Lr~L~L~~n~i~~LP-~~ 712 (1007)
.+..++|.+++|.++.+ -..+| .++++|+.+.|.+|.++ .+|.......||+.|+|.+|.|+++. ++
T Consensus 77 p~~t~~LdlsnNkl~~i--------d~~~f--~nl~nLq~v~l~~N~Lt--~IP~f~~~sghl~~L~L~~N~I~sv~se~ 144 (873)
T KOG4194|consen 77 PSQTQTLDLSNNKLSHI--------DFEFF--YNLPNLQEVNLNKNELT--RIPRFGHESGHLEKLDLRHNLISSVTSEE 144 (873)
T ss_pred ccceeeeeccccccccC--------cHHHH--hcCCcceeeeeccchhh--hcccccccccceeEEeeeccccccccHHH
Confidence 34566777777766532 22345 67777777777777777 77766666677777777777777664 34
Q ss_pred cccCCCCCEEeecCCcccccccc-cc---ccceecccccccccccccccccccCcCCCccccceeeCCCcccChHhhhcC
Q 001843 713 TPILFCLATLDVSHTKVQRLPYA-FW---PSRHLYLNWIFLATNVFRHPQFVKWETSLQTLWGLCIKADEVQSLDYFRRL 788 (1007)
Q Consensus 713 i~~L~~L~~L~L~~~~l~~lP~~-i~---~Lr~L~l~~~~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~l~~L 788 (1007)
+.-++.|++|||+.|.|.++|.. +. ++++|++. ++.....-...|..|.+|-+|. +.-+..+...+..+.+|
T Consensus 145 L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La---~N~It~l~~~~F~~lnsL~tlk-LsrNrittLp~r~Fk~L 220 (873)
T KOG4194|consen 145 LSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLA---SNRITTLETGHFDSLNSLLTLK-LSRNRITTLPQRSFKRL 220 (873)
T ss_pred HHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeec---cccccccccccccccchheeee-cccCcccccCHHHhhhc
Confidence 66677777777777777776653 22 23777777 5544333334455666665552 22223323344556666
Q ss_pred CCCCeEEeeecCCCchhhHHHHHHHhhcCCCCCeEEEeecCCCCCCcccccCCCCCcEEEecccC-CCCCcCccCC----
Q 001843 789 TSLRKLGLKCSSTTSTSLKKEIIGAVLQLSELHSLKLICETPSYLPLLEMAEHYKLQKLYLSGHL-PPNSVIGDRS---- 863 (1007)
Q Consensus 789 ~~L~~L~l~~~~~~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~L~g~~-~~lp~~~i~~---- 863 (1007)
++|+.|++..+. .....+ ..|.++++|+.|.|..|+.....-..|..+.+++.|+|..|. ..+...|+..
T Consensus 221 ~~L~~LdLnrN~--irive~---ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L 295 (873)
T KOG4194|consen 221 PKLESLDLNRNR--IRIVEG---LTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSL 295 (873)
T ss_pred chhhhhhccccc--eeeehh---hhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchh
Confidence 666666666554 111110 344455555555555444333223333444444444444433 3333334444
Q ss_pred -------------------CCCCceEEEEEeeecCCCCcCccccCCCCcEEEeecCCcCCCceeecCCCCCCCcEEEecc
Q 001843 864 -------------------FPPNVVTLTLSQLRLEYDPMPILGRLRQLKILRLFGGSYTGEEMSCSSGEFPNLLVLKLWK 924 (1007)
Q Consensus 864 -------------------~l~~L~~L~L~~~~l~~~~~~~l~~Lp~L~~L~L~~~~~~~~~l~~~~~~fp~L~~L~L~~ 924 (1007)
|.++|+.|+|++|+++..+...|..|..|+.|+|+.|...- .-...+.++.+|+.|+|.+
T Consensus 296 ~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~-l~e~af~~lssL~~LdLr~ 374 (873)
T KOG4194|consen 296 EQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDH-LAEGAFVGLSSLHKLDLRS 374 (873)
T ss_pred hhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHH-HHhhHHHHhhhhhhhcCcC
Confidence 24555555555555544444455555555555555443210 0011233567888888886
Q ss_pred CCCCcceEEcC-----CCCccccEeEeeccCCCC-CCc-CccccccCccEEEeccCCccccccccccccc
Q 001843 925 LNRLRQWRIKE-----GAMPCLRQLEIRSCGYLV-PPT-GLKHVTSSLREFLLTNMPSTFGSVADIERVL 987 (1007)
Q Consensus 925 ~~~L~~l~~~~-----~~~p~L~~L~l~~c~~L~-lp~-~l~~L~~~L~~L~l~~c~~~~~~~~~~~~~~ 987 (1007)
. .+ +|.++. ..||+|++|.+.+ ++++ +|. .+..| ++|++|++.+++ ++.++++.
T Consensus 375 N-~l-s~~IEDaa~~f~gl~~LrkL~l~g-Nqlk~I~krAfsgl-~~LE~LdL~~Na-----iaSIq~nA 435 (873)
T KOG4194|consen 375 N-EL-SWCIEDAAVAFNGLPSLRKLRLTG-NQLKSIPKRAFSGL-EALEHLDLGDNA-----IASIQPNA 435 (873)
T ss_pred C-eE-EEEEecchhhhccchhhhheeecC-ceeeecchhhhccC-cccceecCCCCc-----ceeecccc
Confidence 3 23 343332 2489999999998 6798 776 67888 999999999987 44555543
No 10
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.77 E-value=6.1e-18 Score=218.57 Aligned_cols=266 Identities=21% Similarity=0.149 Sum_probs=157.7
Q ss_pred CCCCcccEEEecCCC-CCCcCCCccccCCCcCcEEecccC-CCcccCcccccCCCCCEEeecCC-ccccccccc--cccc
Q 001843 666 RRLGMLKVLDLEGVY-KPMLTNNNALGRLPFLEYLGLRST-FIDSLPDSTPILFCLATLDVSHT-KVQRLPYAF--WPSR 740 (1007)
Q Consensus 666 ~~l~~Lr~L~Ls~~~-l~~~~lp~~i~~L~~Lr~L~L~~n-~i~~LP~~i~~L~~L~~L~L~~~-~l~~lP~~i--~~Lr 740 (1007)
..+++|+.|+|++|. +. .+| .++.+++|++|+|++| .+..+|.+|++|++|++|++++| .+..+|..+ .+|+
T Consensus 631 ~~l~~Lk~L~Ls~~~~l~--~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i~l~sL~ 707 (1153)
T PLN03210 631 HSLTGLRNIDLRGSKNLK--EIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGINLKSLY 707 (1153)
T ss_pred ccCCCCCEEECCCCCCcC--cCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcCCCCCCC
Confidence 444555555555443 22 333 2444555555555442 24445555555555555555554 444444432 2334
Q ss_pred eecccccccccccccccccccCcCCCccccceeeCCCcccChHhhhcCCCCCeEEeeecCCCchhhHHH----HHHHhhc
Q 001843 741 HLYLNWIFLATNVFRHPQFVKWETSLQTLWGLCIKADEVQSLDYFRRLTSLRKLGLKCSSTTSTSLKKE----IIGAVLQ 816 (1007)
Q Consensus 741 ~L~l~~~~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~l~~~----~~~~l~~ 816 (1007)
+|+++ +|.....+|.. .++|+.|...... . ..+.....+++|+.|.+..+. ...+.+. .+.....
T Consensus 708 ~L~Ls---gc~~L~~~p~~---~~nL~~L~L~~n~-i--~~lP~~~~l~~L~~L~l~~~~--~~~l~~~~~~l~~~~~~~ 776 (1153)
T PLN03210 708 RLNLS---GCSRLKSFPDI---STNISWLDLDETA-I--EEFPSNLRLENLDELILCEMK--SEKLWERVQPLTPLMTML 776 (1153)
T ss_pred EEeCC---CCCCccccccc---cCCcCeeecCCCc-c--ccccccccccccccccccccc--hhhccccccccchhhhhc
Confidence 44444 44433333322 1233333211111 0 011111245566666665432 1111100 0011223
Q ss_pred CCCCCeEEEeecCCCCCCcccccCCCCCcEEEecccC--CCCCcCccCCCCCCceEEEEEeeecCCCCcCccccCCCCcE
Q 001843 817 LSELHSLKLICETPSYLPLLEMAEHYKLQKLYLSGHL--PPNSVIGDRSFPPNVVTLTLSQLRLEYDPMPILGRLRQLKI 894 (1007)
Q Consensus 817 l~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~L~g~~--~~lp~~~i~~~l~~L~~L~L~~~~l~~~~~~~l~~Lp~L~~ 894 (1007)
.++|+.|+|+++......+..+..+++|+.|+|++|. ..+|. .+ . +++|+.|+|++|...... + ...++|+.
T Consensus 777 ~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~-~~-~-L~sL~~L~Ls~c~~L~~~-p--~~~~nL~~ 850 (1153)
T PLN03210 777 SPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPT-GI-N-LESLESLDLSGCSRLRTF-P--DISTNISD 850 (1153)
T ss_pred cccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCC-CC-C-ccccCEEECCCCCccccc-c--ccccccCE
Confidence 4689999999876555567778889999999999865 77887 54 5 899999999998643222 2 22468999
Q ss_pred EEeecCCcCCCceeecCCCCCCCcEEEeccCCCCcceEEcCCCCccccEeEeeccCCCC
Q 001843 895 LRLFGGSYTGEEMSCSSGEFPNLLVLKLWKLNRLRQWRIKEGAMPCLRQLEIRSCGYLV 953 (1007)
Q Consensus 895 L~L~~~~~~~~~l~~~~~~fp~L~~L~L~~~~~L~~l~~~~~~~p~L~~L~l~~c~~L~ 953 (1007)
|+|++|.+. .++.....+++|+.|+|.+|++++.++.....+++|+.|++++|.+|+
T Consensus 851 L~Ls~n~i~--~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~ 907 (1153)
T PLN03210 851 LNLSRTGIE--EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALT 907 (1153)
T ss_pred eECCCCCCc--cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCcccc
Confidence 999976553 456666789999999999999999998888889999999999999887
No 11
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.69 E-value=3.4e-19 Score=187.93 Aligned_cols=289 Identities=20% Similarity=0.155 Sum_probs=164.4
Q ss_pred CCCcccEEEecCCCCCCcCCCccccCCCcCcEEecccCCCcccCcccccCCCCCEEeecCCccccccccccccceecccc
Q 001843 667 RLGMLKVLDLEGVYKPMLTNNNALGRLPFLEYLGLRSTFIDSLPDSTPILFCLATLDVSHTKVQRLPYAFWPSRHLYLNW 746 (1007)
Q Consensus 667 ~l~~Lr~L~Ls~~~l~~~~lp~~i~~L~~Lr~L~L~~n~i~~LP~~i~~L~~L~~L~L~~~~l~~lP~~i~~Lr~L~l~~ 746 (1007)
.+..|..|+..+|++. .+|..++++..|..|++.+|.++.+|+..-+++.|++||...|-++.+|+.++.|+.|.+-|
T Consensus 135 ~~~~l~dl~~~~N~i~--slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~tlP~~lg~l~~L~~Ly 212 (565)
T KOG0472|consen 135 RLLDLEDLDATNNQIS--SLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLLETLPPELGGLESLELLY 212 (565)
T ss_pred HHhhhhhhhccccccc--cCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhhhhcCChhhcchhhhHHHH
Confidence 3333444444444444 34444444444444444444444444333334444444444444444444444442222222
Q ss_pred cccccccccccccccCcCCCccccceeeCCCcccChHh-hhcCCCCCeEEeeecCCCchhhHHHHHHHhhcCCCCCeEEE
Q 001843 747 IFLATNVFRHPQFVKWETSLQTLWGLCIKADEVQSLDY-FRRLTSLRKLGLKCSSTTSTSLKKEIIGAVLQLSELHSLKL 825 (1007)
Q Consensus 747 ~~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~-l~~L~~L~~L~l~~~~~~~~~l~~~~~~~l~~l~~L~~L~L 825 (1007)
.+.+. ...+| .|+.+..|.+|+ ...+.. ...+.+ +..|++|..|++..+. ..+++ ..+..+++|..|++
T Consensus 213 L~~Nk-i~~lP-ef~gcs~L~Elh-~g~N~i-~~lpae~~~~L~~l~vLDLRdNk--lke~P----de~clLrsL~rLDl 282 (565)
T KOG0472|consen 213 LRRNK-IRFLP-EFPGCSLLKELH-VGENQI-EMLPAEHLKHLNSLLVLDLRDNK--LKEVP----DEICLLRSLERLDL 282 (565)
T ss_pred hhhcc-cccCC-CCCccHHHHHHH-hcccHH-HhhHHHHhcccccceeeeccccc--cccCc----hHHHHhhhhhhhcc
Confidence 11332 22333 344444444441 111111 112333 3478888899998876 66666 77888999999999
Q ss_pred eecCCCCCCcccccCCCCCcEEEecccC-CC--------------------------------------CCcCccCC---
Q 001843 826 ICETPSYLPLLEMAEHYKLQKLYLSGHL-PP--------------------------------------NSVIGDRS--- 863 (1007)
Q Consensus 826 ~~~~~~~~~~~~l~~~~~L~~L~L~g~~-~~--------------------------------------lp~~~i~~--- 863 (1007)
++|..+. .+.+++++ +|+.|-+.|+. .. .|. |...
T Consensus 283 SNN~is~-Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~-~~~~~~~ 359 (565)
T KOG0472|consen 283 SNNDISS-LPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPS-ESFPDIY 359 (565)
T ss_pred cCCcccc-CCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCC-Ccccchh
Confidence 9988776 66777777 88888777653 10 011 1100
Q ss_pred CCCC--------------------------ceEEEEEeeecCC-----------------------CCcCccccCCCCcE
Q 001843 864 FPPN--------------------------VVTLTLSQLRLEY-----------------------DPMPILGRLRQLKI 894 (1007)
Q Consensus 864 ~l~~--------------------------L~~L~L~~~~l~~-----------------------~~~~~l~~Lp~L~~ 894 (1007)
...+ .+..+++.|++.+ ..+..++.+++|..
T Consensus 360 ~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~ 439 (565)
T KOG0472|consen 360 AIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTF 439 (565)
T ss_pred hhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhccee
Confidence 0111 4455555555432 11223457889999
Q ss_pred EEeecCCcCCCceeecCCCCCCCcEEEeccCCCCcceE-----------------------Ec-CCCCccccEeEeeccC
Q 001843 895 LRLFGGSYTGEEMSCSSGEFPNLLVLKLWKLNRLRQWR-----------------------IK-EGAMPCLRQLEIRSCG 950 (1007)
Q Consensus 895 L~L~~~~~~~~~l~~~~~~fp~L~~L~L~~~~~L~~l~-----------------------~~-~~~~p~L~~L~l~~c~ 950 (1007)
|+|++| +. ..++...+++..|+.|+++.. ....+| .+ .+.|.+|..|++.+ +
T Consensus 440 L~L~NN-~L-n~LP~e~~~lv~Lq~LnlS~N-rFr~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~n-N 515 (565)
T KOG0472|consen 440 LDLSNN-LL-NDLPEEMGSLVRLQTLNLSFN-RFRMLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQN-N 515 (565)
T ss_pred eecccc-hh-hhcchhhhhhhhhheeccccc-ccccchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCC-C
Confidence 999844 33 255666677777888888763 333332 22 23588999999998 4
Q ss_pred CCC-CCcCccccccCccEEEeccCCc
Q 001843 951 YLV-PPTGLKHVTSSLREFLLTNMPS 975 (1007)
Q Consensus 951 ~L~-lp~~l~~L~~~L~~L~l~~c~~ 975 (1007)
.+. +|.+++++ ++|++|.+.|+|-
T Consensus 516 dlq~IPp~Lgnm-tnL~hLeL~gNpf 540 (565)
T KOG0472|consen 516 DLQQIPPILGNM-TNLRHLELDGNPF 540 (565)
T ss_pred chhhCChhhccc-cceeEEEecCCcc
Confidence 577 99999999 9999999999983
No 12
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.64 E-value=6.7e-19 Score=185.73 Aligned_cols=217 Identities=23% Similarity=0.147 Sum_probs=118.8
Q ss_pred cCCCcceEEEEeccccCCCCchhhhhhhccccccCCCCcccEEEecCCCCCCcCCCccccCCCcCcEEecccCCCcccCc
Q 001843 632 LLSWRLHSYLVFDSRIRGTPAKQIGIILGKCISKRRLGMLKVLDLEGVYKPMLTNNNALGRLPFLEYLGLRSTFIDSLPD 711 (1007)
Q Consensus 632 ~~~~~LRsL~l~~~~~~~~~~~~i~~~l~~~~~~~~l~~Lr~L~Ls~~~l~~~~lp~~i~~L~~Lr~L~L~~n~i~~LP~ 711 (1007)
..+..+.+|.+.+|... .+|..+ .++..+..|+.++|++. .+|..++.+..|+.|+.++|.+.++|+
T Consensus 65 ~nL~~l~vl~~~~n~l~---------~lp~ai--g~l~~l~~l~vs~n~ls--~lp~~i~s~~~l~~l~~s~n~~~el~~ 131 (565)
T KOG0472|consen 65 KNLACLTVLNVHDNKLS---------QLPAAI--GELEALKSLNVSHNKLS--ELPEQIGSLISLVKLDCSSNELKELPD 131 (565)
T ss_pred hcccceeEEEeccchhh---------hCCHHH--HHHHHHHHhhcccchHh--hccHHHhhhhhhhhhhccccceeecCc
Confidence 44455555555555543 222223 44555555555555555 555555555555555555555555555
Q ss_pred ccccCCCCCEEeecCCcccccccccccc--------------------------ceecccccccccccccccccccCcCC
Q 001843 712 STPILFCLATLDVSHTKVQRLPYAFWPS--------------------------RHLYLNWIFLATNVFRHPQFVKWETS 765 (1007)
Q Consensus 712 ~i~~L~~L~~L~L~~~~l~~lP~~i~~L--------------------------r~L~l~~~~~~~~~~~~p~~i~~L~~ 765 (1007)
+|+.+..|+.|+..+|++..+|.+++++ +||+.. .+. ...+|+.++.|.+
T Consensus 132 ~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~---~N~-L~tlP~~lg~l~~ 207 (565)
T KOG0472|consen 132 SIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCN---SNL-LETLPPELGGLES 207 (565)
T ss_pred hHHHHhhhhhhhccccccccCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccc---hhh-hhcCChhhcchhh
Confidence 5555555555555555555555554444 444333 221 3344555555544
Q ss_pred CccccceeeCCCcccChHhhhcCCCCCeEEeeecCCCchhhHHHHHHHh-hcCCCCCeEEEeecCCCCCCcccccCCCCC
Q 001843 766 LQTLWGLCIKADEVQSLDYFRRLTSLRKLGLKCSSTTSTSLKKEIIGAV-LQLSELHSLKLICETPSYLPLLEMAEHYKL 844 (1007)
Q Consensus 766 L~~L~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~l~~~~~~~l-~~l~~L~~L~L~~~~~~~~~~~~l~~~~~L 844 (1007)
|..|..-... ...+.+|+.+..|+.|.+..+. .+.++ +.. ..+++|..|+++.|.... .++.++-+.+|
T Consensus 208 L~~LyL~~Nk---i~~lPef~gcs~L~Elh~g~N~--i~~lp----ae~~~~L~~l~vLDLRdNklke-~Pde~clLrsL 277 (565)
T KOG0472|consen 208 LELLYLRRNK---IRFLPEFPGCSLLKELHVGENQ--IEMLP----AEHLKHLNSLLVLDLRDNKLKE-VPDEICLLRSL 277 (565)
T ss_pred hHHHHhhhcc---cccCCCCCccHHHHHHHhcccH--HHhhH----HHHhcccccceeeecccccccc-CchHHHHhhhh
Confidence 4444211111 1123345555555555554443 33333 443 367788888888766554 66777777788
Q ss_pred cEEEecccC-CCCCcCccCCCCCCceEEEEEeeec
Q 001843 845 QKLYLSGHL-PPNSVIGDRSFPPNVVTLTLSQLRL 878 (1007)
Q Consensus 845 ~~L~L~g~~-~~lp~~~i~~~l~~L~~L~L~~~~l 878 (1007)
.+|+++++. ..+|. .+++ + .|+.|-+.+|.+
T Consensus 278 ~rLDlSNN~is~Lp~-sLgn-l-hL~~L~leGNPl 309 (565)
T KOG0472|consen 278 ERLDLSNNDISSLPY-SLGN-L-HLKFLALEGNPL 309 (565)
T ss_pred hhhcccCCccccCCc-cccc-c-eeeehhhcCCch
Confidence 888888777 77777 7777 6 788888887764
No 13
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.58 E-value=3.2e-17 Score=189.91 Aligned_cols=105 Identities=22% Similarity=0.310 Sum_probs=69.6
Q ss_pred CCceEEEEEeeecCCCCcCccccCCCCcEEEeecCCcCCCceee-cCCCCCCCcEEEeccCCCCcceEE-----------
Q 001843 866 PNVVTLTLSQLRLEYDPMPILGRLRQLKILRLFGGSYTGEEMSC-SSGEFPNLLVLKLWKLNRLRQWRI----------- 933 (1007)
Q Consensus 866 ~~L~~L~L~~~~l~~~~~~~l~~Lp~L~~L~L~~~~~~~~~l~~-~~~~fp~L~~L~L~~~~~L~~l~~----------- 933 (1007)
+.|+.|.+.+|.+++...+.+-.+++|+.|+|++|... .++. ....|+.|+.|+|++ +.|+.+|.
T Consensus 359 ~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~--~fpas~~~kle~LeeL~LSG-NkL~~Lp~tva~~~~L~tL 435 (1081)
T KOG0618|consen 359 AALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLN--SFPASKLRKLEELEELNLSG-NKLTTLPDTVANLGRLHTL 435 (1081)
T ss_pred HHHHHHHHhcCcccccchhhhccccceeeeeecccccc--cCCHHHHhchHHhHHHhccc-chhhhhhHHHHhhhhhHHH
Confidence 45677777777777777777778888888888765432 2222 224566777777776 34555542
Q ss_pred -----------cCCCCccccEeEeeccCCCC---CCcCccccccCccEEEeccCCcc
Q 001843 934 -----------KEGAMPCLRQLEIRSCGYLV---PPTGLKHVTSSLREFLLTNMPST 976 (1007)
Q Consensus 934 -----------~~~~~p~L~~L~l~~c~~L~---lp~~l~~L~~~L~~L~l~~c~~~ 976 (1007)
+...+|.|+.+|++ |++|+ +|..... ++|++|+++|++..
T Consensus 436 ~ahsN~l~~fPe~~~l~qL~~lDlS-~N~L~~~~l~~~~p~--p~LkyLdlSGN~~l 489 (1081)
T KOG0618|consen 436 RAHSNQLLSFPELAQLPQLKVLDLS-CNNLSEVTLPEALPS--PNLKYLDLSGNTRL 489 (1081)
T ss_pred hhcCCceeechhhhhcCcceEEecc-cchhhhhhhhhhCCC--cccceeeccCCccc
Confidence 23347888899998 57777 5543321 78999999999843
No 14
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.54 E-value=3.8e-14 Score=170.48 Aligned_cols=252 Identities=22% Similarity=0.160 Sum_probs=153.1
Q ss_pred cccEEEecCCCCCCcCCCccccCCCcCcEEecccCCCcccCcccccCCCCCEEeecCCccccccccccccceeccccccc
Q 001843 670 MLKVLDLEGVYKPMLTNNNALGRLPFLEYLGLRSTFIDSLPDSTPILFCLATLDVSHTKVQRLPYAFWPSRHLYLNWIFL 749 (1007)
Q Consensus 670 ~Lr~L~Ls~~~l~~~~lp~~i~~L~~Lr~L~L~~n~i~~LP~~i~~L~~L~~L~L~~~~l~~lP~~i~~Lr~L~l~~~~~ 749 (1007)
.-.+|+|+++.++ .+|..+. .+|+.|++.+|+++.||.. +++|++|+|++|+|+.+|....+|++|++. +
T Consensus 202 ~~~~LdLs~~~Lt--sLP~~l~--~~L~~L~L~~N~Lt~LP~l---p~~Lk~LdLs~N~LtsLP~lp~sL~~L~Ls---~ 271 (788)
T PRK15387 202 GNAVLNVGESGLT--TLPDCLP--AHITTLVIPDNNLTSLPAL---PPELRTLEVSGNQLTSLPVLPPGLLELSIF---S 271 (788)
T ss_pred CCcEEEcCCCCCC--cCCcchh--cCCCEEEccCCcCCCCCCC---CCCCcEEEecCCccCcccCcccccceeecc---C
Confidence 3456777777776 6776664 3677777777777777642 466777777777777777666666777766 4
Q ss_pred ccccccccccccCcCCCccccceeeCCCcccChHhhhcCCCCCeEEeeecCCCchhhHHHHHHHhhcCCCCCeEEEeecC
Q 001843 750 ATNVFRHPQFVKWETSLQTLWGLCIKADEVQSLDYFRRLTSLRKLGLKCSSTTSTSLKKEIIGAVLQLSELHSLKLICET 829 (1007)
Q Consensus 750 ~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~l~~~~~~~l~~l~~L~~L~L~~~~ 829 (1007)
|. ...+|... ++|+.|.... +.. ...+. .+++|+.|++++|. ...++ . -..+|+.|.+++|.
T Consensus 272 N~-L~~Lp~lp---~~L~~L~Ls~-N~L-t~LP~---~p~~L~~LdLS~N~--L~~Lp----~---lp~~L~~L~Ls~N~ 333 (788)
T PRK15387 272 NP-LTHLPALP---SGLCKLWIFG-NQL-TSLPV---LPPGLQELSVSDNQ--LASLP----A---LPSELCKLWAYNNQ 333 (788)
T ss_pred Cc-hhhhhhch---hhcCEEECcC-Ccc-ccccc---cccccceeECCCCc--cccCC----C---CcccccccccccCc
Confidence 43 33444322 2333332211 111 01111 23567888887765 22222 1 11356667777654
Q ss_pred CCCCCcccccCC-CCCcEEEecccC-CCCCcCccCCCCCCceEEEEEeeecCCCCcCccccCCCCcEEEeecCCcCCCce
Q 001843 830 PSYLPLLEMAEH-YKLQKLYLSGHL-PPNSVIGDRSFPPNVVTLTLSQLRLEYDPMPILGRLRQLKILRLFGGSYTGEEM 907 (1007)
Q Consensus 830 ~~~~~~~~l~~~-~~L~~L~L~g~~-~~lp~~~i~~~l~~L~~L~L~~~~l~~~~~~~l~~Lp~L~~L~L~~~~~~~~~l 907 (1007)
... +..+ ++|+.|+|++|. ..+|. ++++|+.|++++|.+.. ++. ..++|+.|+|++|.+.. +
T Consensus 334 L~~-----LP~lp~~Lq~LdLS~N~Ls~LP~-----lp~~L~~L~Ls~N~L~~--LP~--l~~~L~~LdLs~N~Lt~--L 397 (788)
T PRK15387 334 LTS-----LPTLPSGLQELSVSDNQLASLPT-----LPSELYKLWAYNNRLTS--LPA--LPSGLKELIVSGNRLTS--L 397 (788)
T ss_pred ccc-----ccccccccceEecCCCccCCCCC-----CCcccceehhhcccccc--Ccc--cccccceEEecCCcccC--C
Confidence 332 1122 478888888876 66775 14677888888887753 222 23578888888665542 2
Q ss_pred eecCCCCCCCcEEEeccCCCCcceEEcCCCCccccEeEeeccCCCC-CCcCccccccCccEEEeccCC
Q 001843 908 SCSSGEFPNLLVLKLWKLNRLRQWRIKEGAMPCLRQLEIRSCGYLV-PPTGLKHVTSSLREFLLTNMP 974 (1007)
Q Consensus 908 ~~~~~~fp~L~~L~L~~~~~L~~l~~~~~~~p~L~~L~l~~c~~L~-lp~~l~~L~~~L~~L~l~~c~ 974 (1007)
+. ..++|+.|+++++ .+..+|. .+.+|+.|++++ ++++ +|..+..+ ++|+.|++++|+
T Consensus 398 P~---l~s~L~~LdLS~N-~LssIP~---l~~~L~~L~Ls~-NqLt~LP~sl~~L-~~L~~LdLs~N~ 456 (788)
T PRK15387 398 PV---LPSELKELMVSGN-RLTSLPM---LPSGLLSLSVYR-NQLTRLPESLIHL-SSETTVNLEGNP 456 (788)
T ss_pred CC---cccCCCEEEccCC-cCCCCCc---chhhhhhhhhcc-CcccccChHHhhc-cCCCeEECCCCC
Confidence 21 2467888888874 4666653 245678888887 4577 88888888 888888888886
No 15
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.42 E-value=8.6e-15 Score=170.07 Aligned_cols=260 Identities=19% Similarity=0.155 Sum_probs=132.4
Q ss_pred CCeEEEEEecCCCCCCCCCcCCCcceEEEEeccccCCCCchhhhhhhccccccCCCCcccEEEecCCCCCCcCCCccccC
Q 001843 613 FAVRRLAANLGSNSFPYSSLLSWRLHSYLVFDSRIRGTPAKQIGIILGKCISKRRLGMLKVLDLEGVYKPMLTNNNALGR 692 (1007)
Q Consensus 613 ~~~r~Lsl~~~~~~~~~~~~~~~~LRsL~l~~~~~~~~~~~~i~~~l~~~~~~~~l~~Lr~L~Ls~~~l~~~~lp~~i~~ 692 (1007)
.+.++|....+..........-.+|.++.+..+... .+|.+. ..|.+|..|+..+|.+. .+|..+..
T Consensus 219 ~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~---------~lp~wi--~~~~nle~l~~n~N~l~--~lp~ri~~ 285 (1081)
T KOG0618|consen 219 PSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLS---------NLPEWI--GACANLEALNANHNRLV--ALPLRISR 285 (1081)
T ss_pred cchheeeeccCcceeeccccccccceeeecchhhhh---------cchHHH--HhcccceEecccchhHH--hhHHHHhh
Confidence 345555555554332222233456666776666664 233555 67777777777777776 67777777
Q ss_pred CCcCcEEecccCCCcccCcccccCCCCCEEeecCCcccccccccccc-----ceecccccccccccccccc-cccCcCCC
Q 001843 693 LPFLEYLGLRSTFIDSLPDSTPILFCLATLDVSHTKVQRLPYAFWPS-----RHLYLNWIFLATNVFRHPQ-FVKWETSL 766 (1007)
Q Consensus 693 L~~Lr~L~L~~n~i~~LP~~i~~L~~L~~L~L~~~~l~~lP~~i~~L-----r~L~l~~~~~~~~~~~~p~-~i~~L~~L 766 (1007)
+..|++|++..|.++.+|...+.+++|++|+|..|+|..+|..+..- +.|+.+ .+. ....|. +=..+..
T Consensus 286 ~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s---~n~-l~~lp~~~e~~~~~- 360 (1081)
T KOG0618|consen 286 ITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVS---SNK-LSTLPSYEENNHAA- 360 (1081)
T ss_pred hhhHHHHHhhhhhhhhCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhh---hcc-ccccccccchhhHH-
Confidence 77777777777777777777777777777777777777777633221 222222 111 111221 0112223
Q ss_pred ccccceeeCCCcccChHhhhcCCCCCeEEeeecCCCchhhHHHHHHHhhcCCCCCeEEEeecCCCCCCcccccCCCCCcE
Q 001843 767 QTLWGLCIKADEVQSLDYFRRLTSLRKLGLKCSSTTSTSLKKEIIGAVLQLSELHSLKLICETPSYLPLLEMAEHYKLQK 846 (1007)
Q Consensus 767 ~~L~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~~~~L~~ 846 (1007)
|+.|.+.++. -.+... ..+.++++|+.|+|++|....-.-..+.+++.|++
T Consensus 361 ------------------------Lq~LylanN~-Ltd~c~----p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~Lee 411 (1081)
T KOG0618|consen 361 ------------------------LQELYLANNH-LTDSCF----PVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEE 411 (1081)
T ss_pred ------------------------HHHHHHhcCc-ccccch----hhhccccceeeeeecccccccCCHHHHhchHHhHH
Confidence 3333444333 111111 34445555555555554333212233444555555
Q ss_pred EEecccC-CCCCcCccCCCCCCceEEEEEeeecCCCCcCccccCCCCcEEEeecCCcCCCceeecCCCCCCCcEEEecc
Q 001843 847 LYLSGHL-PPNSVIGDRSFPPNVVTLTLSQLRLEYDPMPILGRLRQLKILRLFGGSYTGEEMSCSSGEFPNLLVLKLWK 924 (1007)
Q Consensus 847 L~L~g~~-~~lp~~~i~~~l~~L~~L~L~~~~l~~~~~~~l~~Lp~L~~L~L~~~~~~~~~l~~~~~~fp~L~~L~L~~ 924 (1007)
|+|+||. ..+|. .+.. ++.|+.|...+|++. ..|.+..+|.|+.++|+.|....-.++.... -|+|++|+|+|
T Consensus 412 L~LSGNkL~~Lp~-tva~-~~~L~tL~ahsN~l~--~fPe~~~l~qL~~lDlS~N~L~~~~l~~~~p-~p~LkyLdlSG 485 (1081)
T KOG0618|consen 412 LNLSGNKLTTLPD-TVAN-LGRLHTLRAHSNQLL--SFPELAQLPQLKVLDLSCNNLSEVTLPEALP-SPNLKYLDLSG 485 (1081)
T ss_pred HhcccchhhhhhH-HHHh-hhhhHHHhhcCCcee--echhhhhcCcceEEecccchhhhhhhhhhCC-CcccceeeccC
Confidence 5555555 55554 4444 555555555555542 2335555555555555544433222221111 15555555555
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.41 E-value=8.2e-13 Score=159.08 Aligned_cols=253 Identities=19% Similarity=0.124 Sum_probs=137.2
Q ss_pred EEEEecCCCCCCCCCcCCCcceEEEEeccccCCCCchhhhhhhccccccCCCCcccEEEecCCCCCCcCCCccccCCCcC
Q 001843 617 RLAANLGSNSFPYSSLLSWRLHSYLVFDSRIRGTPAKQIGIILGKCISKRRLGMLKVLDLEGVYKPMLTNNNALGRLPFL 696 (1007)
Q Consensus 617 ~Lsl~~~~~~~~~~~~~~~~LRsL~l~~~~~~~~~~~~i~~~l~~~~~~~~l~~Lr~L~Ls~~~l~~~~lp~~i~~L~~L 696 (1007)
.|.+..+....++... .++|+.|.+.+|.+...| ..+++|++|+|++|.++ .+|.. ..+|
T Consensus 205 ~LdLs~~~LtsLP~~l-~~~L~~L~L~~N~Lt~LP--------------~lp~~Lk~LdLs~N~Lt--sLP~l---p~sL 264 (788)
T PRK15387 205 VLNVGESGLTTLPDCL-PAHITTLVIPDNNLTSLP--------------ALPPELRTLEVSGNQLT--SLPVL---PPGL 264 (788)
T ss_pred EEEcCCCCCCcCCcch-hcCCCEEEccCCcCCCCC--------------CCCCCCcEEEecCCccC--cccCc---cccc
Confidence 4455554444332221 236677777766654211 22356777777777776 56642 3466
Q ss_pred cEEecccCCCcccCcccccCCCCCEEeecCCccccccccccccceecccccccccccccccccccCcCCCccccceeeCC
Q 001843 697 EYLGLRSTFIDSLPDSTPILFCLATLDVSHTKVQRLPYAFWPSRHLYLNWIFLATNVFRHPQFVKWETSLQTLWGLCIKA 776 (1007)
Q Consensus 697 r~L~L~~n~i~~LP~~i~~L~~L~~L~L~~~~l~~lP~~i~~Lr~L~l~~~~~~~~~~~~p~~i~~L~~L~~L~~~~~~~ 776 (1007)
+.|+|++|.++.+|.. +.+|+.|++++|+++.+|....+|++|+++ +|. ...+|...
T Consensus 265 ~~L~Ls~N~L~~Lp~l---p~~L~~L~Ls~N~Lt~LP~~p~~L~~LdLS---~N~-L~~Lp~lp---------------- 321 (788)
T PRK15387 265 LELSIFSNPLTHLPAL---PSGLCKLWIFGNQLTSLPVLPPGLQELSVS---DNQ-LASLPALP---------------- 321 (788)
T ss_pred ceeeccCCchhhhhhc---hhhcCEEECcCCccccccccccccceeECC---CCc-cccCCCCc----------------
Confidence 7777777777766643 245667777777777776666666777776 443 22333221
Q ss_pred CcccChHhhhcCCCCCeEEeeecCCCchhhHHHHHHHhhcCCCCCeEEEeecCCCCCCcccccCCCCCcEEEecccC-CC
Q 001843 777 DEVQSLDYFRRLTSLRKLGLKCSSTTSTSLKKEIIGAVLQLSELHSLKLICETPSYLPLLEMAEHYKLQKLYLSGHL-PP 855 (1007)
Q Consensus 777 ~~~~~~~~l~~L~~L~~L~l~~~~~~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~L~g~~-~~ 855 (1007)
.+|+.|.+.+|. ...++ . -..+|+.|+|++|.... .+ . .+++|+.|++++|. ..
T Consensus 322 ------------~~L~~L~Ls~N~--L~~LP----~---lp~~Lq~LdLS~N~Ls~-LP-~--lp~~L~~L~Ls~N~L~~ 376 (788)
T PRK15387 322 ------------SELCKLWAYNNQ--LTSLP----T---LPSGLQELSVSDNQLAS-LP-T--LPSELYKLWAYNNRLTS 376 (788)
T ss_pred ------------ccccccccccCc--ccccc----c---cccccceEecCCCccCC-CC-C--CCcccceehhhcccccc
Confidence 123334444333 11121 1 01356666666544332 11 1 12366667776655 55
Q ss_pred CCcCccCCCCCCceEEEEEeeecCCCCcCccccCCCCcEEEeecCCcCCCceeecCCCCCCCcEEEeccCCCCcceEEcC
Q 001843 856 NSVIGDRSFPPNVVTLTLSQLRLEYDPMPILGRLRQLKILRLFGGSYTGEEMSCSSGEFPNLLVLKLWKLNRLRQWRIKE 935 (1007)
Q Consensus 856 lp~~~i~~~l~~L~~L~L~~~~l~~~~~~~l~~Lp~L~~L~L~~~~~~~~~l~~~~~~fp~L~~L~L~~~~~L~~l~~~~ 935 (1007)
+|. . +.+|+.|+|++|.+... +. ..++|+.|+|++|.+. .++. .+.+|+.|++++ ++++.+|...
T Consensus 377 LP~-l----~~~L~~LdLs~N~Lt~L--P~--l~s~L~~LdLS~N~Ls--sIP~---l~~~L~~L~Ls~-NqLt~LP~sl 441 (788)
T PRK15387 377 LPA-L----PSGLKELIVSGNRLTSL--PV--LPSELKELMVSGNRLT--SLPM---LPSGLLSLSVYR-NQLTRLPESL 441 (788)
T ss_pred Ccc-c----ccccceEEecCCcccCC--CC--cccCCCEEEccCCcCC--CCCc---chhhhhhhhhcc-CcccccChHH
Confidence 654 1 35677777777776532 21 1356777777755543 2221 234667777776 4566666655
Q ss_pred CCCccccEeEeeccCCCC
Q 001843 936 GAMPCLRQLEIRSCGYLV 953 (1007)
Q Consensus 936 ~~~p~L~~L~l~~c~~L~ 953 (1007)
+.+++|+.|++++|+ +.
T Consensus 442 ~~L~~L~~LdLs~N~-Ls 458 (788)
T PRK15387 442 IHLSSETTVNLEGNP-LS 458 (788)
T ss_pred hhccCCCeEECCCCC-CC
Confidence 667777777777754 44
No 17
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.38 E-value=1.5e-14 Score=136.12 Aligned_cols=150 Identities=21% Similarity=0.180 Sum_probs=120.5
Q ss_pred cCCCcceEEEEeccccCCCCchhhhhhhccccccCCCCcccEEEecCCCCCCcCCCccccCCCcCcEEecccCCCcccCc
Q 001843 632 LLSWRLHSYLVFDSRIRGTPAKQIGIILGKCISKRRLGMLKVLDLEGVYKPMLTNNNALGRLPFLEYLGLRSTFIDSLPD 711 (1007)
Q Consensus 632 ~~~~~LRsL~l~~~~~~~~~~~~i~~~l~~~~~~~~l~~Lr~L~Ls~~~l~~~~lp~~i~~L~~Lr~L~L~~n~i~~LP~ 711 (1007)
.+++++..|.++.|.... .+|.+ ..+++|++|++++|++. ++|.+|+.|+.||.|+++-|.+..+|.
T Consensus 30 f~~s~ITrLtLSHNKl~~--------vppni---a~l~nlevln~~nnqie--~lp~~issl~klr~lnvgmnrl~~lpr 96 (264)
T KOG0617|consen 30 FNMSNITRLTLSHNKLTV--------VPPNI---AELKNLEVLNLSNNQIE--ELPTSISSLPKLRILNVGMNRLNILPR 96 (264)
T ss_pred cchhhhhhhhcccCceee--------cCCcH---HHhhhhhhhhcccchhh--hcChhhhhchhhhheecchhhhhcCcc
Confidence 456777888888887752 33444 78999999999999999 899999999999999999999999999
Q ss_pred ccccCCCCCEEeecCCccc--ccccccccc---ceecccccccccccccccccccCcCCCccccceeeCCCcccChHhhh
Q 001843 712 STPILFCLATLDVSHTKVQ--RLPYAFWPS---RHLYLNWIFLATNVFRHPQFVKWETSLQTLWGLCIKADEVQSLDYFR 786 (1007)
Q Consensus 712 ~i~~L~~L~~L~L~~~~l~--~lP~~i~~L---r~L~l~~~~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~l~ 786 (1007)
.||.++-|++|||.+|++. .+|..+..+ +-|+++ .+. -..+|..+++|++||.|..-+.+ . ...+.+++
T Consensus 97 gfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~---dnd-fe~lp~dvg~lt~lqil~lrdnd-l-l~lpkeig 170 (264)
T KOG0617|consen 97 GFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLG---DND-FEILPPDVGKLTNLQILSLRDND-L-LSLPKEIG 170 (264)
T ss_pred ccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhc---CCC-cccCChhhhhhcceeEEeeccCc-h-hhCcHHHH
Confidence 9999999999999999665 788887777 667777 544 45678889999999988433332 2 45778888
Q ss_pred cCCCCCeEEeeecC
Q 001843 787 RLTSLRKLGLKCSS 800 (1007)
Q Consensus 787 ~L~~L~~L~l~~~~ 800 (1007)
.|++|+.|.|.++.
T Consensus 171 ~lt~lrelhiqgnr 184 (264)
T KOG0617|consen 171 DLTRLRELHIQGNR 184 (264)
T ss_pred HHHHHHHHhcccce
Confidence 88888888888876
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.37 E-value=9.8e-13 Score=159.50 Aligned_cols=243 Identities=16% Similarity=0.119 Sum_probs=130.8
Q ss_pred eEEEEEecCCCCCCCCCcCCCcceEEEEeccccCCCCchhhhhhhccccccCCCCcccEEEecCCCCCCcCCCccccCCC
Q 001843 615 VRRLAANLGSNSFPYSSLLSWRLHSYLVFDSRIRGTPAKQIGIILGKCISKRRLGMLKVLDLEGVYKPMLTNNNALGRLP 694 (1007)
Q Consensus 615 ~r~Lsl~~~~~~~~~~~~~~~~LRsL~l~~~~~~~~~~~~i~~~l~~~~~~~~l~~Lr~L~Ls~~~l~~~~lp~~i~~L~ 694 (1007)
...|.+.......++.. -.++|+.|.+.+|.+...| ..+ +++|++|+|++|.+. .+|..+. .
T Consensus 180 ~~~L~L~~~~LtsLP~~-Ip~~L~~L~Ls~N~LtsLP--------~~l-----~~nL~~L~Ls~N~Lt--sLP~~l~--~ 241 (754)
T PRK15370 180 KTELRLKILGLTTIPAC-IPEQITTLILDNNELKSLP--------ENL-----QGNIKTLYANSNQLT--SIPATLP--D 241 (754)
T ss_pred ceEEEeCCCCcCcCCcc-cccCCcEEEecCCCCCcCC--------hhh-----ccCCCEEECCCCccc--cCChhhh--c
Confidence 34455554443333221 1346778888777765322 122 246788888888877 6776553 3
Q ss_pred cCcEEecccCCCcccCcccccCCCCCEEeecCCcccccccccc-ccceecccccccccccccccccccCcCCCcccccee
Q 001843 695 FLEYLGLRSTFIDSLPDSTPILFCLATLDVSHTKVQRLPYAFW-PSRHLYLNWIFLATNVFRHPQFVKWETSLQTLWGLC 773 (1007)
Q Consensus 695 ~Lr~L~L~~n~i~~LP~~i~~L~~L~~L~L~~~~l~~lP~~i~-~Lr~L~l~~~~~~~~~~~~p~~i~~L~~L~~L~~~~ 773 (1007)
+|+.|+|++|.+..+|..+. .+|++|++++|++..+|..+. +|++|+++ +|. ...+|..+. ++|+.|+...
T Consensus 242 ~L~~L~Ls~N~L~~LP~~l~--s~L~~L~Ls~N~L~~LP~~l~~sL~~L~Ls---~N~-Lt~LP~~lp--~sL~~L~Ls~ 313 (754)
T PRK15370 242 TIQEMELSINRITELPERLP--SALQSLDLFHNKISCLPENLPEELRYLSVY---DNS-IRTLPAHLP--SGITHLNVQS 313 (754)
T ss_pred cccEEECcCCccCcCChhHh--CCCCEEECcCCccCccccccCCCCcEEECC---CCc-cccCcccch--hhHHHHHhcC
Confidence 67888888888888877654 478888888887777776554 56777777 554 334454332 2344443222
Q ss_pred eCCCcccChHhhhcCCCCCeEEeeecCCCchhhHHHHHHHhhcCCCCCeEEEeecCCCCCCcccccCCCCCcEEEecccC
Q 001843 774 IKADEVQSLDYFRRLTSLRKLGLKCSSTTSTSLKKEIIGAVLQLSELHSLKLICETPSYLPLLEMAEHYKLQKLYLSGHL 853 (1007)
Q Consensus 774 ~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~L~g~~ 853 (1007)
. .. ...+..+ .++|+.|.+.+|. ...++ ..+. ++|+.|++++|.... .+..+ +++|+.|+|++|.
T Consensus 314 N-~L-t~LP~~l--~~sL~~L~Ls~N~--Lt~LP----~~l~--~sL~~L~Ls~N~L~~-LP~~l--p~~L~~LdLs~N~ 378 (754)
T PRK15370 314 N-SL-TALPETL--PPGLKTLEAGENA--LTSLP----ASLP--PELQVLDVSKNQITV-LPETL--PPTITTLDVSRNA 378 (754)
T ss_pred C-cc-ccCCccc--cccceeccccCCc--cccCC----hhhc--CcccEEECCCCCCCc-CChhh--cCCcCEEECCCCc
Confidence 1 11 0111111 2456666666654 22233 2221 466666666654332 22222 2466666666655
Q ss_pred -CCCCcCccCCCCCCceEEEEEeeecCCCC---cCccccCCCCcEEEeecCCc
Q 001843 854 -PPNSVIGDRSFPPNVVTLTLSQLRLEYDP---MPILGRLRQLKILRLFGGSY 902 (1007)
Q Consensus 854 -~~lp~~~i~~~l~~L~~L~L~~~~l~~~~---~~~l~~Lp~L~~L~L~~~~~ 902 (1007)
..+|. .+ ..+|+.|++++|++...+ +..++.+|++..|+|.+|.+
T Consensus 379 Lt~LP~-~l---~~sL~~LdLs~N~L~~LP~sl~~~~~~~~~l~~L~L~~Npl 427 (754)
T PRK15370 379 LTNLPE-NL---PAALQIMQASRNNLVRLPESLPHFRGEGPQPTRIIVEYNPF 427 (754)
T ss_pred CCCCCH-hH---HHHHHHHhhccCCcccCchhHHHHhhcCCCccEEEeeCCCc
Confidence 55554 32 235666666666654221 11123345666666665544
No 19
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.34 E-value=1.2e-12 Score=160.98 Aligned_cols=310 Identities=19% Similarity=0.147 Sum_probs=208.3
Q ss_pred CCcCCCcceEEEEeccccCCCCchhhhhhhccccccCCCCcccEEEecCCC--CCCcCCCcc-ccCCCcCcEEecccC-C
Q 001843 630 SSLLSWRLHSYLVFDSRIRGTPAKQIGIILGKCISKRRLGMLKVLDLEGVY--KPMLTNNNA-LGRLPFLEYLGLRST-F 705 (1007)
Q Consensus 630 ~~~~~~~LRsL~l~~~~~~~~~~~~i~~~l~~~~~~~~l~~Lr~L~Ls~~~--l~~~~lp~~-i~~L~~Lr~L~L~~n-~ 705 (1007)
........|...+.++.....+ .. .+++.|++|-+.+|. +. .++.. |..|++|++|||++| .
T Consensus 518 ~~~~~~~~rr~s~~~~~~~~~~---------~~---~~~~~L~tLll~~n~~~l~--~is~~ff~~m~~LrVLDLs~~~~ 583 (889)
T KOG4658|consen 518 QVKSWNSVRRMSLMNNKIEHIA---------GS---SENPKLRTLLLQRNSDWLL--EISGEFFRSLPLLRVLDLSGNSS 583 (889)
T ss_pred cccchhheeEEEEeccchhhcc---------CC---CCCCccceEEEeecchhhh--hcCHHHHhhCcceEEEECCCCCc
Confidence 4456678899999988774322 22 577789999999996 45 55543 778999999999975 5
Q ss_pred CcccCcccccCCCCCEEeecCCcccccccccccc---ceecccccccccccccccccccCcCCCccccceeeC-CCcccC
Q 001843 706 IDSLPDSTPILFCLATLDVSHTKVQRLPYAFWPS---RHLYLNWIFLATNVFRHPQFVKWETSLQTLWGLCIK-ADEVQS 781 (1007)
Q Consensus 706 i~~LP~~i~~L~~L~~L~L~~~~l~~lP~~i~~L---r~L~l~~~~~~~~~~~~p~~i~~L~~L~~L~~~~~~-~~~~~~ 781 (1007)
+..||++|++|-+|++|+++++.+..+|.++.+| .||++. .+......|..+..|++|++|...... ......
T Consensus 584 l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~---~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~ 660 (889)
T KOG4658|consen 584 LSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLE---VTGRLESIPGILLELQSLRVLRLPRSALSNDKLL 660 (889)
T ss_pred cCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheeccc---cccccccccchhhhcccccEEEeeccccccchhh
Confidence 7899999999999999999999999999999888 888888 555444556666679999999766554 333456
Q ss_pred hHhhhcCCCCCeEEeeecCCCchhhHHHHHHHhhcCCCCC----eEEEeecCCCCCCcccccCCCCCcEEEecccC-CCC
Q 001843 782 LDYFRRLTSLRKLGLKCSSTTSTSLKKEIIGAVLQLSELH----SLKLICETPSYLPLLEMAEHYKLQKLYLSGHL-PPN 856 (1007)
Q Consensus 782 ~~~l~~L~~L~~L~l~~~~~~~~~l~~~~~~~l~~l~~L~----~L~L~~~~~~~~~~~~l~~~~~L~~L~L~g~~-~~l 856 (1007)
..++..|.+|+.|.+.... . .+. ..+..+..|. .+.+.++.. ......+..+.+|+.|.+.++. .+.
T Consensus 661 l~el~~Le~L~~ls~~~~s--~-~~~----e~l~~~~~L~~~~~~l~~~~~~~-~~~~~~~~~l~~L~~L~i~~~~~~e~ 732 (889)
T KOG4658|consen 661 LKELENLEHLENLSITISS--V-LLL----EDLLGMTRLRSLLQSLSIEGCSK-RTLISSLGSLGNLEELSILDCGISEI 732 (889)
T ss_pred HHhhhcccchhhheeecch--h-HhH----hhhhhhHHHHHHhHhhhhccccc-ceeecccccccCcceEEEEcCCCchh
Confidence 6777788888888876543 2 222 2233333333 333332221 2245667778899999998866 322
Q ss_pred CcCccCC----C-CCCceEEEEEeeecCCCCcCccccCCCCcEEEeecCCcCCCceeec---------CCCCCCCcEE-E
Q 001843 857 SVIGDRS----F-PPNVVTLTLSQLRLEYDPMPILGRLRQLKILRLFGGSYTGEEMSCS---------SGEFPNLLVL-K 921 (1007)
Q Consensus 857 p~~~i~~----~-l~~L~~L~L~~~~l~~~~~~~l~~Lp~L~~L~L~~~~~~~~~l~~~---------~~~fp~L~~L-~ 921 (1007)
...|... . +++|..+.+.+|... ..+.+..-.|+|+.|.+..+......++.. .-.|+++..+ .
T Consensus 733 ~~~~~~~~~~~~~f~~l~~~~~~~~~~~-r~l~~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~~l~~ 811 (889)
T KOG4658|consen 733 VIEWEESLIVLLCFPNLSKVSILNCHML-RDLTWLLFAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKLEGLRM 811 (889)
T ss_pred hcccccccchhhhHHHHHHHHhhccccc-cccchhhccCcccEEEEecccccccCCCHHHHhhhcccEEeccccccccee
Confidence 1112221 1 345666666666532 334444567999999998655433222210 1235666666 4
Q ss_pred eccCCCCcceEEcCCCCccccEeEeeccCCCC-CCcCccccccCccEEEeccC
Q 001843 922 LWKLNRLRQWRIKEGAMPCLRQLEIRSCGYLV-PPTGLKHVTSSLREFLLTNM 973 (1007)
Q Consensus 922 L~~~~~L~~l~~~~~~~p~L~~L~l~~c~~L~-lp~~l~~L~~~L~~L~l~~c 973 (1007)
+.+.+.+..+-...-.+++|+.+.+..|+++. +| .+.++.+.+|
T Consensus 812 ~~~l~~l~~i~~~~l~~~~l~~~~ve~~p~l~~~P--------~~~~~~i~~~ 856 (889)
T KOG4658|consen 812 LCSLGGLPQLYWLPLSFLKLEELIVEECPKLGKLP--------LLSTLTIVGC 856 (889)
T ss_pred eecCCCCceeEecccCccchhheehhcCcccccCc--------cccccceecc
Confidence 66667777776666678889999999998777 54 4455666665
No 20
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.34 E-value=1.1e-10 Score=150.28 Aligned_cols=281 Identities=11% Similarity=0.109 Sum_probs=174.5
Q ss_pred CcEEEEEEcCCCChHHHHHHHHHhhhhcccCCCceEEEEecCCCCCCHHHHHHHHHHHHhhhhhhh----------cccc
Q 001843 272 TTQVIALIGKAGSGKTTLARIVYNRVYVKRHFTKRAWVHIPIMSMVEDRDVLADILKQIDESLLKV----------EATL 341 (1007)
Q Consensus 272 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~l~~il~~l~~~~~~~----------~~~~ 341 (1007)
..+++.|.|++|.||||++.++... ++.++|+++.. .+.+...++..++..+....... ....
T Consensus 31 ~~~~~~v~apaG~GKTtl~~~~~~~------~~~~~w~~l~~-~d~~~~~f~~~l~~~l~~~~~~~~~~~~~~~~~~~~~ 103 (903)
T PRK04841 31 NYRLVLVTSPAGYGKTTLISQWAAG------KNNLGWYSLDE-SDNQPERFASYLIAALQQATNGHCSKSEALAQKRQYA 103 (903)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHh------CCCeEEEecCc-ccCCHHHHHHHHHHHHHHhcCcccchhhhhhccCCcC
Confidence 3489999999999999999998862 23689999851 33466677788888875321110 0012
Q ss_pred CHHHHHHHHHHHcC--CCcEEEEEeCcCccCchhhhhhc-cccCCCCCCcEEEEEcCCCcccc-cccCCcceeeecC---
Q 001843 342 SAEELMWRITQALD--DSTFLIVMENAEHQKSQVWDSFL-GKLCSFTQCGKIIITTSSTEDFV-EPLGAAFSTLHVP--- 414 (1007)
Q Consensus 342 ~~~~l~~~l~~~L~--~kr~LlVlDdv~~~~~~~~~~l~-~l~~~~~~gs~IliTTR~~~~va-~~~~~~~~~~~l~--- 414 (1007)
+...+...+...+. +++++|||||+...+......+. .+......+.++|||||...... ..........++.
T Consensus 104 ~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~sR~~~~~~~~~l~~~~~~~~l~~~~ 183 (903)
T PRK04841 104 SLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLSRNLPPLGIANLRVRDQLLEIGSQQ 183 (903)
T ss_pred CHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEeCCCCCCchHhHHhcCcceecCHHh
Confidence 22333433433333 68999999999754433433333 44443255678889999853121 1111111445566
Q ss_pred -CCCHHHHHHHHHhhhccccccccCCChHHHHHHHHHHHHcCCCchHHHHHHHHhcCCCCChHHHHHHHHH---cccchh
Q 001843 415 -GLGKNESWELFLKKARIAEDVLQSRSSELIKLKKQILNICDGLPLRVVLLAGLLSTKQPSYEEWSKVIER---ANGDNL 490 (1007)
Q Consensus 415 -~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~g~~L~~~~~~~~~w~~~l~~---l~i~~~ 490 (1007)
+|+.+|+.++|......... ...+.+|.+.|+|.|+++..++..+.....+.......+.. ..+...
T Consensus 184 l~f~~~e~~~ll~~~~~~~~~---------~~~~~~l~~~t~Gwp~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (903)
T PRK04841 184 LAFDHQEAQQFFDQRLSSPIE---------AAESSRLCDDVEGWATALQLIALSARQNNSSLHDSARRLAGINASHLSDY 254 (903)
T ss_pred CCCCHHHHHHHHHhccCCCCC---------HHHHHHHHHHhCChHHHHHHHHHHHhhCCCchhhhhHhhcCCCchhHHHH
Confidence 99999999999876554222 35678899999999999999998776543211111111100 012333
Q ss_pred hh-hhhcCCccCchhhhhhhccCCCCcccchhHHHHHHHhcccCCCCCCccCCHHHHHHHHHHHHHhccceEEEeecCCC
Q 001843 491 VA-LCYQDLPAQVKPCILYMGLFPREYEIPVRRLIHLWCAEGFAPPDLDLIASEEDLAEMYLEELVTRHMIQVIRWRLDG 569 (1007)
Q Consensus 491 l~-~sy~~L~~~~k~cfl~la~fp~~~~i~~~~Li~~Wiaeg~i~~~~~~~~~~e~~~~~~l~~Lv~rsll~~~~~~~~g 569 (1007)
+. -.++.||++.+..++..|+++. +.... +..+. . .+.+...+++|.+++++..... +
T Consensus 255 l~~~v~~~l~~~~~~~l~~~a~~~~---~~~~l------~~~l~--~-------~~~~~~~L~~l~~~~l~~~~~~---~ 313 (903)
T PRK04841 255 LVEEVLDNVDLETRHFLLRCSVLRS---MNDAL------IVRVT--G-------EENGQMRLEELERQGLFIQRMD---D 313 (903)
T ss_pred HHHHHHhcCCHHHHHHHHHhccccc---CCHHH------HHHHc--C-------CCcHHHHHHHHHHCCCeeEeec---C
Confidence 22 2378999999999999999873 33221 21112 1 1124678999999999754321 1
Q ss_pred CcceEEcCHHHHHHHHhhhh
Q 001843 570 SPKTCCMPGVLYDILRPKAE 589 (1007)
Q Consensus 570 ~~~~~~mHdlv~d~~~~~~~ 589 (1007)
....|++|++++++++....
T Consensus 314 ~~~~yr~H~L~r~~l~~~l~ 333 (903)
T PRK04841 314 SGEWFRYHPLFASFLRHRCQ 333 (903)
T ss_pred CCCEEehhHHHHHHHHHHHH
Confidence 22358899999999987753
No 21
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.31 E-value=2.7e-12 Score=155.73 Aligned_cols=260 Identities=15% Similarity=0.120 Sum_probs=182.2
Q ss_pred CCCCeEEEEEecCCCCCCCCCcCCCcceEEEEeccccCCCCchhhhhhhccccccCCCCcccEEEecCCCCCCcCCCccc
Q 001843 611 PKFAVRRLAANLGSNSFPYSSLLSWRLHSYLVFDSRIRGTPAKQIGIILGKCISKRRLGMLKVLDLEGVYKPMLTNNNAL 690 (1007)
Q Consensus 611 ~~~~~r~Lsl~~~~~~~~~~~~~~~~LRsL~l~~~~~~~~~~~~i~~~l~~~~~~~~l~~Lr~L~Ls~~~l~~~~lp~~i 690 (1007)
.+..++.|.+.+|....++.. ..++|++|.+.+|.+...| ..+ ...|+.|+|++|.+. .+|..+
T Consensus 197 Ip~~L~~L~Ls~N~LtsLP~~-l~~nL~~L~Ls~N~LtsLP---------~~l----~~~L~~L~Ls~N~L~--~LP~~l 260 (754)
T PRK15370 197 IPEQITTLILDNNELKSLPEN-LQGNIKTLYANSNQLTSIP---------ATL----PDTIQEMELSINRIT--ELPERL 260 (754)
T ss_pred cccCCcEEEecCCCCCcCChh-hccCCCEEECCCCccccCC---------hhh----hccccEEECcCCccC--cCChhH
Confidence 345789999998887665443 2468999999999875322 222 247999999999999 899877
Q ss_pred cCCCcCcEEecccCCCcccCcccccCCCCCEEeecCCcccccccccc-ccceecccccccccccccccccccCcCCCccc
Q 001843 691 GRLPFLEYLGLRSTFIDSLPDSTPILFCLATLDVSHTKVQRLPYAFW-PSRHLYLNWIFLATNVFRHPQFVKWETSLQTL 769 (1007)
Q Consensus 691 ~~L~~Lr~L~L~~n~i~~LP~~i~~L~~L~~L~L~~~~l~~lP~~i~-~Lr~L~l~~~~~~~~~~~~p~~i~~L~~L~~L 769 (1007)
. .+|++|+|++|.++.+|..+. .+|++|+|++|+++.+|..+. .|++|+++ +|. ...+|..+. ++|+.|
T Consensus 261 ~--s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N~Lt~LP~~lp~sL~~L~Ls---~N~-Lt~LP~~l~--~sL~~L 330 (754)
T PRK15370 261 P--SALQSLDLFHNKISCLPENLP--EELRYLSVYDNSIRTLPAHLPSGITHLNVQ---SNS-LTALPETLP--PGLKTL 330 (754)
T ss_pred h--CCCCEEECcCCccCccccccC--CCCcEEECCCCccccCcccchhhHHHHHhc---CCc-cccCCcccc--ccceec
Confidence 5 589999999999999998775 589999999999999998665 45899998 665 335665443 567777
Q ss_pred cceeeCCCcccChHhhhcCCCCCeEEeeecCCCchhhHHHHHHHhhcCCCCCeEEEeecCCCCCCcccccCCCCCcEEEe
Q 001843 770 WGLCIKADEVQSLDYFRRLTSLRKLGLKCSSTTSTSLKKEIIGAVLQLSELHSLKLICETPSYLPLLEMAEHYKLQKLYL 849 (1007)
Q Consensus 770 ~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~L 849 (1007)
....+. . ...+..+ .++|+.|++++|. ...++ ..+ .++|+.|+|++|.... .+..+. ..|+.|++
T Consensus 331 ~Ls~N~-L-t~LP~~l--~~sL~~L~Ls~N~--L~~LP----~~l--p~~L~~LdLs~N~Lt~-LP~~l~--~sL~~LdL 395 (754)
T PRK15370 331 EAGENA-L-TSLPASL--PPELQVLDVSKNQ--ITVLP----ETL--PPTITTLDVSRNALTN-LPENLP--AALQIMQA 395 (754)
T ss_pred cccCCc-c-ccCChhh--cCcccEEECCCCC--CCcCC----hhh--cCCcCEEECCCCcCCC-CCHhHH--HHHHHHhh
Confidence 433332 2 1123333 2689999999886 44454 333 2689999999976543 333332 37999999
Q ss_pred cccC-CCCCcCccCCC---CCCceEEEEEeeecCCCCcCccccCCCCcEEEeecCCcCCCceeecCCCCCCCcE
Q 001843 850 SGHL-PPNSVIGDRSF---PPNVVTLTLSQLRLEYDPMPILGRLRQLKILRLFGGSYTGEEMSCSSGEFPNLLV 919 (1007)
Q Consensus 850 ~g~~-~~lp~~~i~~~---l~~L~~L~L~~~~l~~~~~~~l~~Lp~L~~L~L~~~~~~~~~l~~~~~~fp~L~~ 919 (1007)
++|. ..+|. .+..+ ++++..|+|.+|.+.. ..+++|+.| ++.+.+.+..+.+..+.|++++.
T Consensus 396 s~N~L~~LP~-sl~~~~~~~~~l~~L~L~~Npls~------~tl~~L~~L-l~s~~~~gp~i~~~~~~~~~l~~ 461 (754)
T PRK15370 396 SRNNLVRLPE-SLPHFRGEGPQPTRIIVEYNPFSE------RTIQNMQRL-MSSVGYQGPRVLFAMGDFSIVRV 461 (754)
T ss_pred ccCCcccCch-hHHHHhhcCCCccEEEeeCCCccH------HHHHHHHHh-hhcccccCCcccccccccccccc
Confidence 9987 77775 44321 5889999999998752 455666666 33466666555555555665554
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.30 E-value=1.1e-13 Score=130.43 Aligned_cols=160 Identities=23% Similarity=0.182 Sum_probs=129.5
Q ss_pred hhccccccCCCCcccEEEecCCCCCCcCCCccccCCCcCcEEecccCCCcccCcccccCCCCCEEeecCCcccccccccc
Q 001843 658 ILGKCISKRRLGMLKVLDLEGVYKPMLTNNNALGRLPFLEYLGLRSTFIDSLPDSTPILFCLATLDVSHTKVQRLPYAFW 737 (1007)
Q Consensus 658 ~l~~~~~~~~l~~Lr~L~Ls~~~l~~~~lp~~i~~L~~Lr~L~L~~n~i~~LP~~i~~L~~L~~L~L~~~~l~~lP~~i~ 737 (1007)
.++..| ++.++..|.||+|.++ .+|..|..|.+|+.|++.+|+|+++|.+|+.|++|++|+++-|.+..+|.+++
T Consensus 25 ~~~gLf---~~s~ITrLtLSHNKl~--~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfg 99 (264)
T KOG0617|consen 25 ELPGLF---NMSNITRLTLSHNKLT--VVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFG 99 (264)
T ss_pred hccccc---chhhhhhhhcccCcee--ecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccC
Confidence 344554 7888999999999999 89999999999999999999999999999999999999999999999999998
Q ss_pred cc---ceecccccccccccccccccccCcCCCccccceeeCCCcccChHhhhcCCCCCeEEeeecCCCchhhHHHHHHHh
Q 001843 738 PS---RHLYLNWIFLATNVFRHPQFVKWETSLQTLWGLCIKADEVQSLDYFRRLTSLRKLGLKCSSTTSTSLKKEIIGAV 814 (1007)
Q Consensus 738 ~L---r~L~l~~~~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~l~~~~~~~l 814 (1007)
.+ +.|++.| ++-....+|..|-.|+.|+.|.. ..+.. ...+.++++|++|+.|.+..+. .-+++ ..+
T Consensus 100 s~p~levldlty--nnl~e~~lpgnff~m~tlralyl-~dndf-e~lp~dvg~lt~lqil~lrdnd--ll~lp----kei 169 (264)
T KOG0617|consen 100 SFPALEVLDLTY--NNLNENSLPGNFFYMTTLRALYL-GDNDF-EILPPDVGKLTNLQILSLRDND--LLSLP----KEI 169 (264)
T ss_pred CCchhhhhhccc--cccccccCCcchhHHHHHHHHHh-cCCCc-ccCChhhhhhcceeEEeeccCc--hhhCc----HHH
Confidence 87 8888884 23335578888888887777733 22222 3467789999999999998775 45555 777
Q ss_pred hcCCCCCeEEEeecCCCC
Q 001843 815 LQLSELHSLKLICETPSY 832 (1007)
Q Consensus 815 ~~l~~L~~L~L~~~~~~~ 832 (1007)
+.+..|++|+|.++....
T Consensus 170 g~lt~lrelhiqgnrl~v 187 (264)
T KOG0617|consen 170 GDLTRLRELHIQGNRLTV 187 (264)
T ss_pred HHHHHHHHHhcccceeee
Confidence 888888888888765443
No 23
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.23 E-value=1.6e-09 Score=125.19 Aligned_cols=293 Identities=15% Similarity=0.124 Sum_probs=166.4
Q ss_pred EEEEEEcCCCChHHHHHHHHHhhhhcccCCCceEEEEecCCCCCCHHHHHHHHHHHHhhhhhhhccccCHHHHHHHHHHH
Q 001843 274 QVIALIGKAGSGKTTLARIVYNRVYVKRHFTKRAWVHIPIMSMVEDRDVLADILKQIDESLLKVEATLSAEELMWRITQA 353 (1007)
Q Consensus 274 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~l~~il~~l~~~~~~~~~~~~~~~l~~~l~~~ 353 (1007)
..+.|+|++|+|||++++.++++ .........|+.+.+....+...++..++.++.... ......+...+...+.+.
T Consensus 56 ~~~lI~G~~GtGKT~l~~~v~~~--l~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~-~~~~~~~~~~~~~~~~~~ 132 (394)
T PRK00411 56 LNVLIYGPPGTGKTTTVKKVFEE--LEEIAVKVVYVYINCQIDRTRYAIFSEIARQLFGHP-PPSSGLSFDELFDKIAEY 132 (394)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH--HHHhcCCcEEEEEECCcCCCHHHHHHHHHHHhcCCC-CCCCCCCHHHHHHHHHHH
Confidence 55789999999999999999995 333333334444433377788899999999987520 111233566777777777
Q ss_pred cC--CCcEEEEEeCcCccC----chhhhhhccccCCCCCCcE--EEEEcCCCcccccccCC------cceeeecCCCCHH
Q 001843 354 LD--DSTFLIVMENAEHQK----SQVWDSFLGKLCSFTQCGK--IIITTSSTEDFVEPLGA------AFSTLHVPGLGKN 419 (1007)
Q Consensus 354 L~--~kr~LlVlDdv~~~~----~~~~~~l~~l~~~~~~gs~--IliTTR~~~~va~~~~~------~~~~~~l~~L~~~ 419 (1007)
+. ++..+||||+++.-. .+.+..+...... ..+++ +|.++.... +...... ....+.+++++.+
T Consensus 133 l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~-~~~~~v~vI~i~~~~~-~~~~l~~~~~s~~~~~~i~f~py~~~ 210 (394)
T PRK00411 133 LDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEE-YPGARIGVIGISSDLT-FLYILDPRVKSVFRPEEIYFPPYTAD 210 (394)
T ss_pred HHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhc-cCCCeEEEEEEECCcc-hhhhcCHHHHhcCCcceeecCCCCHH
Confidence 75 456899999998321 1223333222222 22333 555555543 3222110 0156799999999
Q ss_pred HHHHHHHhhhccccccccCCChHHHHHHHHHHHHcCCCchHHHHHHHHh--c---CCC-CChHHHHHHHHHcccchhhhh
Q 001843 420 ESWELFLKKARIAEDVLQSRSSELIKLKKQILNICDGLPLRVVLLAGLL--S---TKQ-PSYEEWSKVIERANGDNLVAL 493 (1007)
Q Consensus 420 ea~~Lf~~~a~~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~g~~L--~---~~~-~~~~~w~~~l~~l~i~~~l~~ 493 (1007)
+..+++..++........-.+..++.+++......|..+.|+.++-... + +.. -+......+.+... .....-
T Consensus 211 e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a~~~~~~~I~~~~v~~a~~~~~-~~~~~~ 289 (394)
T PRK00411 211 EIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAGLIAEREGSRKVTEEDVRKAYEKSE-IVHLSE 289 (394)
T ss_pred HHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHH-HHHHHH
Confidence 9999998776322110001123334444444444677888887765322 1 111 14566666666542 233455
Q ss_pred hhcCCccCchhhhhhhccCCC--CcccchhHHHHH--HHhcccCCCCCCccCCHHHHHHHHHHHHHhccceEEEee--cC
Q 001843 494 CYQDLPAQVKPCILYMGLFPR--EYEIPVRRLIHL--WCAEGFAPPDLDLIASEEDLAEMYLEELVTRHMIQVIRW--RL 567 (1007)
Q Consensus 494 sy~~L~~~~k~cfl~la~fp~--~~~i~~~~Li~~--Wiaeg~i~~~~~~~~~~e~~~~~~l~~Lv~rsll~~~~~--~~ 567 (1007)
.+..||.+.|..+..++..-+ ...+....+... .+++.+- . . ..-......|+++|.+.++|..... ..
T Consensus 290 ~~~~L~~~~k~~L~ai~~~~~~~~~~~~~~~i~~~y~~l~~~~~--~--~-~~~~~~~~~~l~~L~~~glI~~~~~~~g~ 364 (394)
T PRK00411 290 VLRTLPLHEKLLLRAIVRLLKKGGDEVTTGEVYEEYKELCEELG--Y--E-PRTHTRFYEYINKLDMLGIINTRYSGKGG 364 (394)
T ss_pred HHhcCCHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHcC--C--C-cCcHHHHHHHHHHHHhcCCeEEEEecCCC
Confidence 688999988877666553221 123444444432 2332211 0 0 0012335669999999999987643 33
Q ss_pred CCCcceEEcC
Q 001843 568 DGSPKTCCMP 577 (1007)
Q Consensus 568 ~g~~~~~~mH 577 (1007)
.|+.+.++++
T Consensus 365 ~g~~~~~~~~ 374 (394)
T PRK00411 365 RGRTRLISLS 374 (394)
T ss_pred CCCeEEEEec
Confidence 4566666554
No 24
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.09 E-value=1e-11 Score=139.40 Aligned_cols=64 Identities=28% Similarity=0.178 Sum_probs=32.9
Q ss_pred CCCCcccEEEecCCCCCCc---CCCccccCCCcCcEEecccCCCcc-------cCcccccCCCCCEEeecCCcc
Q 001843 666 RRLGMLKVLDLEGVYKPML---TNNNALGRLPFLEYLGLRSTFIDS-------LPDSTPILFCLATLDVSHTKV 729 (1007)
Q Consensus 666 ~~l~~Lr~L~Ls~~~l~~~---~lp~~i~~L~~Lr~L~L~~n~i~~-------LP~~i~~L~~L~~L~L~~~~l 729 (1007)
..+..|++|++++|.+... .++..+...+.|++|+++++.+.. ++..+.++++|+.|++++|.+
T Consensus 20 ~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 93 (319)
T cd00116 20 PKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNAL 93 (319)
T ss_pred HHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCC
Confidence 4455566666666665321 233444455556666666554442 223344555666666655544
No 25
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.05 E-value=1.1e-08 Score=111.89 Aligned_cols=182 Identities=18% Similarity=0.225 Sum_probs=114.2
Q ss_pred EEEEEEcCCCChHHHHHHHHHhhhhcccCCCceEEEEecCCCCCCHHHHHHHHHHHHhhhhhhhccccCHHHHHHHHH--
Q 001843 274 QVIALIGKAGSGKTTLARIVYNRVYVKRHFTKRAWVHIPIMSMVEDRDVLADILKQIDESLLKVEATLSAEELMWRIT-- 351 (1007)
Q Consensus 274 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~l~~il~~l~~~~~~~~~~~~~~~l~~~l~-- 351 (1007)
.++.|+|++|+||||+++.+++.... ..+ ..+|+ +. ...+..+++..|+..++.. . ...+.......+.
T Consensus 44 ~~~~l~G~~G~GKTtl~~~l~~~l~~-~~~-~~~~~-~~--~~~~~~~~l~~i~~~lG~~--~--~~~~~~~~~~~l~~~ 114 (269)
T TIGR03015 44 GFILITGEVGAGKTTLIRNLLKRLDQ-ERV-VAAKL-VN--TRVDAEDLLRMVAADFGLE--T--EGRDKAALLRELEDF 114 (269)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHhcCC-CCe-EEeee-eC--CCCCHHHHHHHHHHHcCCC--C--CCCCHHHHHHHHHHH
Confidence 58999999999999999999984321 111 12333 23 4457778888888887654 1 1122223333333
Q ss_pred --HH-cCCCcEEEEEeCcCccCchhhhhhccccCC-C--CCCcEEEEEcCCCccccccc--------CCc-ceeeecCCC
Q 001843 352 --QA-LDDSTFLIVMENAEHQKSQVWDSFLGKLCS-F--TQCGKIIITTSSTEDFVEPL--------GAA-FSTLHVPGL 416 (1007)
Q Consensus 352 --~~-L~~kr~LlVlDdv~~~~~~~~~~l~~l~~~-~--~~gs~IliTTR~~~~va~~~--------~~~-~~~~~l~~L 416 (1007)
.. ..+++.+||+||++..+...++.++.+.+. . .....|++|.... +.... ... ...+.++++
T Consensus 115 l~~~~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~--~~~~l~~~~~~~l~~r~~~~~~l~~l 192 (269)
T TIGR03015 115 LIEQFAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPE--FRETLQSPQLQQLRQRIIASCHLGPL 192 (269)
T ss_pred HHHHHhCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHH--HHHHHcCchhHHHHhheeeeeeCCCC
Confidence 22 267889999999996666667766633221 0 2223445554422 21111 110 156889999
Q ss_pred CHHHHHHHHHhhhccccccccCCChHHHHHHHHHHHHcCCCchHHHHHHHHh
Q 001843 417 GKNESWELFLKKARIAEDVLQSRSSELIKLKKQILNICDGLPLRVVLLAGLL 468 (1007)
Q Consensus 417 ~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~g~~L 468 (1007)
+.+|..+++...+...... ....-..+..+.|++.++|.|..|..++..+
T Consensus 193 ~~~e~~~~l~~~l~~~g~~--~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 193 DREETREYIEHRLERAGNR--DAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred CHHHHHHHHHHHHHHcCCC--CCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 9999999988766432210 1112235788999999999999999998877
No 26
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.03 E-value=9.3e-12 Score=132.36 Aligned_cols=248 Identities=16% Similarity=0.043 Sum_probs=152.7
Q ss_pred cceEEEEeccccCCCCchhhhhhhccccccCCCCcccEEEecCCCCCCcCCCccccCCCcCcEEeccc-CCCcccCcc-c
Q 001843 636 RLHSYLVFDSRIRGTPAKQIGIILGKCISKRRLGMLKVLDLEGVYKPMLTNNNALGRLPFLEYLGLRS-TFIDSLPDS-T 713 (1007)
Q Consensus 636 ~LRsL~l~~~~~~~~~~~~i~~~l~~~~~~~~l~~Lr~L~Ls~~~l~~~~lp~~i~~L~~Lr~L~L~~-n~i~~LP~~-i 713 (1007)
....+.+..|.+.. +++..| +.+++||.||||+|.|.. --|+.|..+..|-.|-+-+ |+|+.+|+. |
T Consensus 68 ~tveirLdqN~I~~--------iP~~aF--~~l~~LRrLdLS~N~Is~-I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F 136 (498)
T KOG4237|consen 68 ETVEIRLDQNQISS--------IPPGAF--KTLHRLRRLDLSKNNISF-IAPDAFKGLASLLSLVLYGNNKITDLPKGAF 136 (498)
T ss_pred cceEEEeccCCccc--------CChhhc--cchhhhceecccccchhh-cChHhhhhhHhhhHHHhhcCCchhhhhhhHh
Confidence 44566677777653 556788 888889999999888872 2367788888877776666 888888864 7
Q ss_pred ccCCCCCEEeecCCcccccccc-cccc---ceecccccccccccccccc-cccCcCCCccccceeeCCCcc---------
Q 001843 714 PILFCLATLDVSHTKVQRLPYA-FWPS---RHLYLNWIFLATNVFRHPQ-FVKWETSLQTLWGLCIKADEV--------- 779 (1007)
Q Consensus 714 ~~L~~L~~L~L~~~~l~~lP~~-i~~L---r~L~l~~~~~~~~~~~~p~-~i~~L~~L~~L~~~~~~~~~~--------- 779 (1007)
++|..||-|.+.-|.+..++.. +..| +.|.+. .+. ...++. .+..+.+++++..-.......
T Consensus 137 ~gL~slqrLllNan~i~Cir~~al~dL~~l~lLsly---Dn~-~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~ 212 (498)
T KOG4237|consen 137 GGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLY---DNK-IQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADD 212 (498)
T ss_pred hhHHHHHHHhcChhhhcchhHHHHHHhhhcchhccc---chh-hhhhccccccchhccchHhhhcCccccccccchhhhH
Confidence 7888888888887777766542 4444 333333 332 223333 455666666653221110000
Q ss_pred --cChHhhhcCCCCCeEEeeecC------------------------CCchhhHHHHHHHhhcCCCCCeEEEeecCCCCC
Q 001843 780 --QSLDYFRRLTSLRKLGLKCSS------------------------TTSTSLKKEIIGAVLQLSELHSLKLICETPSYL 833 (1007)
Q Consensus 780 --~~~~~l~~L~~L~~L~l~~~~------------------------~~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~ 833 (1007)
..+.+++..+......+...+ ......+. ..+.++++|+.|+|++|.....
T Consensus 213 ~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~---~cf~~L~~L~~lnlsnN~i~~i 289 (498)
T KOG4237|consen 213 LAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPA---KCFKKLPNLRKLNLSNNKITRI 289 (498)
T ss_pred HhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChH---HHHhhcccceEeccCCCccchh
Confidence 011111111111111111000 00011111 3467788888888888777665
Q ss_pred CcccccCCCCCcEEEecccC-CCCCcCccCCCCCCceEEEEEeeecCCCCcCccccCCCCcEEEeecCCc
Q 001843 834 PLLEMAEHYKLQKLYLSGHL-PPNSVIGDRSFPPNVVTLTLSQLRLEYDPMPILGRLRQLKILRLFGGSY 902 (1007)
Q Consensus 834 ~~~~l~~~~~L~~L~L~g~~-~~lp~~~i~~~l~~L~~L~L~~~~l~~~~~~~l~~Lp~L~~L~L~~~~~ 902 (1007)
...+|.....|++|.|..|. ..+....+.. +.+|+.|+|.+|+++...+..|..+.+|..|+|-.|.+
T Consensus 290 ~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~-ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~ 358 (498)
T KOG4237|consen 290 EDGAFEGAAELQELYLTRNKLEFVSSGMFQG-LSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPF 358 (498)
T ss_pred hhhhhcchhhhhhhhcCcchHHHHHHHhhhc-cccceeeeecCCeeEEEecccccccceeeeeehccCcc
Confidence 66777778888888888766 4444324445 78888888888888887778888888888888876654
No 27
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.99 E-value=2.8e-11 Score=128.73 Aligned_cols=253 Identities=19% Similarity=0.120 Sum_probs=169.5
Q ss_pred CCCCeEEEEEecCCCCCCCCC--cCCCcceEEEEeccccCCCCchhhhhhhccccccCCCCcccEEEecC-CCCCCcCCC
Q 001843 611 PKFAVRRLAANLGSNSFPYSS--LLSWRLHSYLVFDSRIRGTPAKQIGIILGKCISKRRLGMLKVLDLEG-VYKPMLTNN 687 (1007)
Q Consensus 611 ~~~~~r~Lsl~~~~~~~~~~~--~~~~~LRsL~l~~~~~~~~~~~~i~~~l~~~~~~~~l~~Lr~L~Ls~-~~l~~~~lp 687 (1007)
.|...-.+-+..|.++.++.. ..+++||.|.++.|.+.. +-++.| .+++.|-.|-+-+ |+|+ .+|
T Consensus 65 LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~--------I~p~AF--~GL~~l~~Lvlyg~NkI~--~l~ 132 (498)
T KOG4237|consen 65 LPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISF--------IAPDAF--KGLASLLSLVLYGNNKIT--DLP 132 (498)
T ss_pred CCCcceEEEeccCCcccCChhhccchhhhceecccccchhh--------cChHhh--hhhHhhhHHHhhcCCchh--hhh
Confidence 556677788888887776554 778999999999998753 667788 8998887766665 8888 788
Q ss_pred cc-ccCCCcCcEEecccCCCcccC-cccccCCCCCEEeecCCccccccc-ccccc---ceecccccc---ccc------c
Q 001843 688 NA-LGRLPFLEYLGLRSTFIDSLP-DSTPILFCLATLDVSHTKVQRLPY-AFWPS---RHLYLNWIF---LAT------N 752 (1007)
Q Consensus 688 ~~-i~~L~~Lr~L~L~~n~i~~LP-~~i~~L~~L~~L~L~~~~l~~lP~-~i~~L---r~L~l~~~~---~~~------~ 752 (1007)
+. |+.|..|+-|.+.-|.+.-++ ..+..|++|..|.+..|.++.++. .+..+ +++.+.-.- .|. .
T Consensus 133 k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~ 212 (498)
T KOG4237|consen 133 KGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADD 212 (498)
T ss_pred hhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhH
Confidence 54 788888888888888888665 457788888888888888888877 34444 555544100 011 0
Q ss_pred cccccccccCcCC----------------------Ccccc---ceeeCCCcccChHhhhcCCCCCeEEeeecCCCchhhH
Q 001843 753 VFRHPQFVKWETS----------------------LQTLW---GLCIKADEVQSLDYFRRLTSLRKLGLKCSSTTSTSLK 807 (1007)
Q Consensus 753 ~~~~p~~i~~L~~----------------------L~~L~---~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~l~ 807 (1007)
....|..++...- ++.+. ...+.........-+.+|++|++|+++++. ...+.
T Consensus 213 ~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~--i~~i~ 290 (498)
T KOG4237|consen 213 LAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNK--ITRIE 290 (498)
T ss_pred HhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCc--cchhh
Confidence 1111111111111 11110 000001111123348899999999999987 44443
Q ss_pred HHHHHHhhcCCCCCeEEEeecCCCCCCcccccCCCCCcEEEecccC-CCCCcCccCCCCCCceEEEEEeeecCCC
Q 001843 808 KEIIGAVLQLSELHSLKLICETPSYLPLLEMAEHYKLQKLYLSGHL-PPNSVIGDRSFPPNVVTLTLSQLRLEYD 881 (1007)
Q Consensus 808 ~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~L~g~~-~~lp~~~i~~~l~~L~~L~L~~~~l~~~ 881 (1007)
+ .+|.+...+++|.|..|......-..|..+..|+.|+|.+|. +.+....+.. +.+|.+|.|-.|.+.++
T Consensus 291 ~---~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~-~~~l~~l~l~~Np~~Cn 361 (498)
T KOG4237|consen 291 D---GAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQT-LFSLSTLNLLSNPFNCN 361 (498)
T ss_pred h---hhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccc-cceeeeeehccCcccCc
Confidence 3 788999999999999876554344567778899999999987 4443325666 88999999998876543
No 28
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=98.98 E-value=1.3e-07 Score=108.15 Aligned_cols=279 Identities=15% Similarity=0.158 Sum_probs=156.3
Q ss_pred EEEEEEcCCCChHHHHHHHHHhhhhcccCCC------ceEEEEecCCCCCCHHHHHHHHHHHHhh-hhhhhccccCHHHH
Q 001843 274 QVIALIGKAGSGKTTLARIVYNRVYVKRHFT------KRAWVHIPIMSMVEDRDVLADILKQIDE-SLLKVEATLSAEEL 346 (1007)
Q Consensus 274 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~------~~~wv~~s~~~~~~~~~~l~~il~~l~~-~~~~~~~~~~~~~l 346 (1007)
..+.|+|++|+|||++++.++++ .....+ ..+|+.+. ...+...++..|+.++.. .........+..+.
T Consensus 41 ~~i~I~G~~GtGKT~l~~~~~~~--l~~~~~~~~~~~~~v~in~~--~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~ 116 (365)
T TIGR02928 41 SNVFIYGKTGTGKTAVTKYVMKE--LEEAAEDRDVRVVTVYVNCQ--ILDTLYQVLVELANQLRGSGEEVPTTGLSTSEV 116 (365)
T ss_pred CcEEEECCCCCCHHHHHHHHHHH--HHHHhhccCCceEEEEEECC--CCCCHHHHHHHHHHHHhhcCCCCCCCCCCHHHH
Confidence 57899999999999999999984 222111 24566665 777788999999999842 00001122344555
Q ss_pred HHHHHHHcC--CCcEEEEEeCcCccC---chhhhhhccc--cCC-CCCCcEEEEEcCCCccccccc----CCc--ceeee
Q 001843 347 MWRITQALD--DSTFLIVMENAEHQK---SQVWDSFLGK--LCS-FTQCGKIIITTSSTEDFVEPL----GAA--FSTLH 412 (1007)
Q Consensus 347 ~~~l~~~L~--~kr~LlVlDdv~~~~---~~~~~~l~~l--~~~-~~~gs~IliTTR~~~~va~~~----~~~--~~~~~ 412 (1007)
...+.+.+. +++++||||+++.-. .+....+..+ ... -+....+|.+|.... ..... ... ...+.
T Consensus 117 ~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v~lI~i~n~~~-~~~~l~~~~~s~~~~~~i~ 195 (365)
T TIGR02928 117 FRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKVGVIGISNDLK-FRENLDPRVKSSLCEEEII 195 (365)
T ss_pred HHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCeEEEEEEECCcc-hHhhcCHHHhccCCcceee
Confidence 566666663 567899999998431 1112222222 111 012234455554443 21111 111 15689
Q ss_pred cCCCCHHHHHHHHHhhhccccccccCCChHHHHHHHHHHHHcCCCc-hHHHHHHHHh--c---CC-CCChHHHHHHHHHc
Q 001843 413 VPGLGKNESWELFLKKARIAEDVLQSRSSELIKLKKQILNICDGLP-LRVVLLAGLL--S---TK-QPSYEEWSKVIERA 485 (1007)
Q Consensus 413 l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~~~~I~~~c~GlP-Lai~~~g~~L--~---~~-~~~~~~w~~~l~~l 485 (1007)
+++++.++-.+++..++...... ....++..+.+.+++....|.| .|+.++-... . .. .-+.+....+.+..
T Consensus 196 f~p~~~~e~~~il~~r~~~~~~~-~~~~~~~l~~i~~~~~~~~Gd~R~al~~l~~a~~~a~~~~~~~it~~~v~~a~~~~ 274 (365)
T TIGR02928 196 FPPYDAEELRDILENRAEKAFYD-GVLDDGVIPLCAALAAQEHGDARKAIDLLRVAGEIAEREGAERVTEDHVEKAQEKI 274 (365)
T ss_pred eCCCCHHHHHHHHHHHHHhhccC-CCCChhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 99999999999998876421110 0123444455566777777887 4444332211 1 11 12455555555543
Q ss_pred ccchhhhhhhcCCccCchhhhhhhccCC--CCcccchhHHHHHH--HhcccCCCCCCccCCHHHHHHHHHHHHHhccceE
Q 001843 486 NGDNLVALCYQDLPAQVKPCILYMGLFP--REYEIPVRRLIHLW--CAEGFAPPDLDLIASEEDLAEMYLEELVTRHMIQ 561 (1007)
Q Consensus 486 ~i~~~l~~sy~~L~~~~k~cfl~la~fp--~~~~i~~~~Li~~W--iaeg~i~~~~~~~~~~e~~~~~~l~~Lv~rsll~ 561 (1007)
. .....-.+..||.+.|..+..++..- .+..+....+...+ +++. + . ...........++..|...|+|.
T Consensus 275 ~-~~~~~~~i~~l~~~~~~~l~ai~~~~~~~~~~~~~~~~~~~y~~~~~~-~--~--~~~~~~~~~~~~l~~l~~~gli~ 348 (365)
T TIGR02928 275 E-KDRLLELIRGLPTHSKLVLLAIANLAANDEDPFRTGEVYEVYKEVCED-I--G--VDPLTQRRISDLLNELDMLGLVE 348 (365)
T ss_pred H-HHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHh-c--C--CCCCcHHHHHHHHHHHHhcCCeE
Confidence 2 23334566789888876666554211 33345566665533 1221 1 0 11123456778999999999999
Q ss_pred EEe
Q 001843 562 VIR 564 (1007)
Q Consensus 562 ~~~ 564 (1007)
...
T Consensus 349 ~~~ 351 (365)
T TIGR02928 349 AEE 351 (365)
T ss_pred EEE
Confidence 764
No 29
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.93 E-value=1.5e-10 Score=129.81 Aligned_cols=261 Identities=17% Similarity=0.043 Sum_probs=146.6
Q ss_pred cCCCcceEEEEeccccCCCCchhhhhhhccccccCCCCcccEEEecCCCCCC-----cCCCccccCCCcCcEEecccCCC
Q 001843 632 LLSWRLHSYLVFDSRIRGTPAKQIGIILGKCISKRRLGMLKVLDLEGVYKPM-----LTNNNALGRLPFLEYLGLRSTFI 706 (1007)
Q Consensus 632 ~~~~~LRsL~l~~~~~~~~~~~~i~~~l~~~~~~~~l~~Lr~L~Ls~~~l~~-----~~lp~~i~~L~~Lr~L~L~~n~i 706 (1007)
..+.+|+.|.+.++.+...... .+...+ ...+.|+.|+++++.+.. ..++..+..+.+|++|+|++|.+
T Consensus 20 ~~l~~L~~l~l~~~~l~~~~~~----~i~~~l--~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 93 (319)
T cd00116 20 PKLLCLQVLRLEGNTLGEEAAK----ALASAL--RPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNAL 93 (319)
T ss_pred HHHhhccEEeecCCCCcHHHHH----HHHHHH--hhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCC
Confidence 3455688888888876321111 344445 677888899998887651 12335567788999999998887
Q ss_pred c-ccCcccccCCC---CCEEeecCCcccc-----ccc---cc-cccceecccccccccccccccccccCcCCCcccccee
Q 001843 707 D-SLPDSTPILFC---LATLDVSHTKVQR-----LPY---AF-WPSRHLYLNWIFLATNVFRHPQFVKWETSLQTLWGLC 773 (1007)
Q Consensus 707 ~-~LP~~i~~L~~---L~~L~L~~~~l~~-----lP~---~i-~~Lr~L~l~~~~~~~~~~~~p~~i~~L~~L~~L~~~~ 773 (1007)
. ..+..+..+.+ |++|++++|.+.. +.. .. .+|+.|++. +|......+
T Consensus 94 ~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~---~n~l~~~~~---------------- 154 (319)
T cd00116 94 GPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLG---RNRLEGASC---------------- 154 (319)
T ss_pred ChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcC---CCcCCchHH----------------
Confidence 6 34444555554 9999998886652 111 11 233444444 322110000
Q ss_pred eCCCcccChHhhhcCCCCCeEEeeecCCCchhhHHHHHHHhhcCCCCCeEEEeecCCCCC----CcccccCCCCCcEEEe
Q 001843 774 IKADEVQSLDYFRRLTSLRKLGLKCSSTTSTSLKKEIIGAVLQLSELHSLKLICETPSYL----PLLEMAEHYKLQKLYL 849 (1007)
Q Consensus 774 ~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~----~~~~l~~~~~L~~L~L 849 (1007)
......+..+++|+.|++.++. -.......++..+..+++|+.|+++++..... ....+..+++|+.|++
T Consensus 155 -----~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~l 228 (319)
T cd00116 155 -----EALAKALRANRDLKELNLANNG-IGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNL 228 (319)
T ss_pred -----HHHHHHHHhCCCcCEEECcCCC-CchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEec
Confidence 1123345556677777777665 11111122335555666777777776543321 1233445677888888
Q ss_pred cccC-CC--CCcCccCC---CCCCceEEEEEeeecCCCCc----CccccCCCCcEEEeecCCcCCCc---eeecCCCC-C
Q 001843 850 SGHL-PP--NSVIGDRS---FPPNVVTLTLSQLRLEYDPM----PILGRLRQLKILRLFGGSYTGEE---MSCSSGEF-P 915 (1007)
Q Consensus 850 ~g~~-~~--lp~~~i~~---~l~~L~~L~L~~~~l~~~~~----~~l~~Lp~L~~L~L~~~~~~~~~---l~~~~~~f-p 915 (1007)
+++. .. +.. .... ..+.|+.|++++|.++.... ..+..+++|++|++++|.+..+. +......+ +
T Consensus 229 s~n~l~~~~~~~-l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~ 307 (319)
T cd00116 229 GDNNLTDAGAAA-LASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGN 307 (319)
T ss_pred CCCcCchHHHHH-HHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCC
Confidence 7765 21 110 1111 03688889998887753222 33456688899999877665432 11122334 6
Q ss_pred CCcEEEecc
Q 001843 916 NLLVLKLWK 924 (1007)
Q Consensus 916 ~L~~L~L~~ 924 (1007)
.|+.|.+.+
T Consensus 308 ~~~~~~~~~ 316 (319)
T cd00116 308 ELESLWVKD 316 (319)
T ss_pred chhhcccCC
Confidence 777777665
No 30
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=98.88 E-value=1.2e-07 Score=111.39 Aligned_cols=283 Identities=16% Similarity=0.164 Sum_probs=184.3
Q ss_pred CcEEEEEEcCCCChHHHHHHHHHhhhhcccCCCceEEEEecCCCCCCHHHHHHHHHHHHhhhhhhh----------cccc
Q 001843 272 TTQVIALIGKAGSGKTTLARIVYNRVYVKRHFTKRAWVHIPIMSMVEDRDVLADILKQIDESLLKV----------EATL 341 (1007)
Q Consensus 272 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~l~~il~~l~~~~~~~----------~~~~ 341 (1007)
+.|++.|..+.|.|||||+-+.+. .. ..=..+.|++++ ..+.++..+++.++..++.-.... ....
T Consensus 36 ~~RL~li~APAGfGKttl~aq~~~--~~-~~~~~v~Wlsld-e~dndp~rF~~yLi~al~~~~p~~~~~a~~l~q~~~~~ 111 (894)
T COG2909 36 DYRLILISAPAGFGKTTLLAQWRE--LA-ADGAAVAWLSLD-ESDNDPARFLSYLIAALQQATPTLGDEAQTLLQKHQYV 111 (894)
T ss_pred CceEEEEeCCCCCcHHHHHHHHHH--hc-CcccceeEeecC-CccCCHHHHHHHHHHHHHHhCccccHHHHHHHHhcccc
Confidence 449999999999999999999986 22 223458999976 145678888888888887431111 1234
Q ss_pred CHHHHHHHHHHHcC--CCcEEEEEeCcCccCchhhhh-hccccCCCCCCcEEEEEcCCCc--ccccccCCcceeeecC--
Q 001843 342 SAEELMWRITQALD--DSTFLIVMENAEHQKSQVWDS-FLGKLCSFTQCGKIIITTSSTE--DFVEPLGAAFSTLHVP-- 414 (1007)
Q Consensus 342 ~~~~l~~~l~~~L~--~kr~LlVlDdv~~~~~~~~~~-l~~l~~~~~~gs~IliTTR~~~--~va~~~~~~~~~~~l~-- 414 (1007)
+...+...+..-+. .++.++||||-.-........ +..|.+....+-..|||||... .+++.--.. ..+++.
T Consensus 112 ~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~SR~rP~l~la~lRlr~-~llEi~~~ 190 (894)
T COG2909 112 SLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTSRSRPQLGLARLRLRD-ELLEIGSE 190 (894)
T ss_pred cHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEeccCCCCcccceeehh-hHHhcChH
Confidence 45555555555443 578999999976433333333 3344444366789999999876 122211111 334443
Q ss_pred --CCCHHHHHHHHHhhhccccccccCCChHHHHHHHHHHHHcCCCchHHHHHHHHhcCCCCChHHHHHHHHHcc--cc-h
Q 001843 415 --GLGKNESWELFLKKARIAEDVLQSRSSELIKLKKQILNICDGLPLRVVLLAGLLSTKQPSYEEWSKVIERAN--GD-N 489 (1007)
Q Consensus 415 --~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~g~~L~~~~~~~~~w~~~l~~l~--i~-~ 489 (1007)
.++.+|+-++|....... -.+..++.+.+...|-+-|+..++-.++.+.. .+.-...+.-.. +. -
T Consensus 191 ~Lrf~~eE~~~fl~~~~~l~---------Ld~~~~~~L~~~teGW~~al~L~aLa~~~~~~-~~q~~~~LsG~~~~l~dY 260 (894)
T COG2909 191 ELRFDTEEAAAFLNDRGSLP---------LDAADLKALYDRTEGWAAALQLIALALRNNTS-AEQSLRGLSGAASHLSDY 260 (894)
T ss_pred hhcCChHHHHHHHHHcCCCC---------CChHHHHHHHhhcccHHHHHHHHHHHccCCCc-HHHHhhhccchHHHHHHH
Confidence 578999999998875432 23567789999999999999999988884332 222222111000 11 1
Q ss_pred hhhhhhcCCccCchhhhhhhccCCCCcccchhHHHHHHHhcccCCCCCCccCCHHHHHHHHHHHHHhccceEEEeecCCC
Q 001843 490 LVALCYQDLPAQVKPCILYMGLFPREYEIPVRRLIHLWCAEGFAPPDLDLIASEEDLAEMYLEELVTRHMIQVIRWRLDG 569 (1007)
Q Consensus 490 ~l~~sy~~L~~~~k~cfl~la~fp~~~~i~~~~Li~~Wiaeg~i~~~~~~~~~~e~~~~~~l~~Lv~rsll~~~~~~~~g 569 (1007)
...--++.||+++|..++-+|+++.-. +.|+..- +-++.+...+++|.+++++-..-.+
T Consensus 261 L~eeVld~Lp~~l~~FLl~~svl~~f~----~eL~~~L--------------tg~~ng~amLe~L~~~gLFl~~Ldd--- 319 (894)
T COG2909 261 LVEEVLDRLPPELRDFLLQTSVLSRFN----DELCNAL--------------TGEENGQAMLEELERRGLFLQRLDD--- 319 (894)
T ss_pred HHHHHHhcCCHHHHHHHHHHHhHHHhh----HHHHHHH--------------hcCCcHHHHHHHHHhCCCceeeecC---
Confidence 122346889999999999999987532 2333222 1123467789999999998654432
Q ss_pred CcceEEcCHHHHHHHHhhhhh
Q 001843 570 SPKTCCMPGVLYDILRPKAED 590 (1007)
Q Consensus 570 ~~~~~~mHdlv~d~~~~~~~~ 590 (1007)
.-.-|+.|.++.+|.+.....
T Consensus 320 ~~~WfryH~LFaeFL~~r~~~ 340 (894)
T COG2909 320 EGQWFRYHHLFAEFLRQRLQR 340 (894)
T ss_pred CCceeehhHHHHHHHHhhhcc
Confidence 223699999999999877665
No 31
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=98.87 E-value=4.3e-08 Score=109.13 Aligned_cols=245 Identities=20% Similarity=0.173 Sum_probs=133.6
Q ss_pred EEEEEEcCCCChHHHHHHHHHhhhhcccCCCceEEEEecCCCCCCHHHHHHHHHHHHhhhhhhh---c--cccCHHHHHH
Q 001843 274 QVIALIGKAGSGKTTLARIVYNRVYVKRHFTKRAWVHIPIMSMVEDRDVLADILKQIDESLLKV---E--ATLSAEELMW 348 (1007)
Q Consensus 274 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~l~~il~~l~~~~~~~---~--~~~~~~~l~~ 348 (1007)
..+.++|++|+|||+||+.+++ .....| ..+... .... ...+...+..+... .. + .... ....+
T Consensus 31 ~~~ll~Gp~G~GKT~la~~ia~--~~~~~~---~~~~~~--~~~~-~~~l~~~l~~~~~~--~vl~iDEi~~l~-~~~~e 99 (305)
T TIGR00635 31 DHLLLYGPPGLGKTTLAHIIAN--EMGVNL---KITSGP--ALEK-PGDLAAILTNLEEG--DVLFIDEIHRLS-PAVEE 99 (305)
T ss_pred CeEEEECCCCCCHHHHHHHHHH--HhCCCE---EEeccc--hhcC-chhHHHHHHhcccC--CEEEEehHhhhC-HHHHH
Confidence 5678999999999999999999 343322 122221 1111 12222223332211 00 0 0011 11233
Q ss_pred HHHHHcCCCcEEEEEeCcCccCchhhhhhccccCCCCCCcEEEEEcCCCcccccccCCcc-eeeecCCCCHHHHHHHHHh
Q 001843 349 RITQALDDSTFLIVMENAEHQKSQVWDSFLGKLCSFTQCGKIIITTSSTEDFVEPLGAAF-STLHVPGLGKNESWELFLK 427 (1007)
Q Consensus 349 ~l~~~L~~kr~LlVlDdv~~~~~~~~~~l~~l~~~~~~gs~IliTTR~~~~va~~~~~~~-~~~~l~~L~~~ea~~Lf~~ 427 (1007)
.+...+.+.+..+|+++.. +...|.. .+ .+.+-|..||+... +........ ..+++++++.++..+++.+
T Consensus 100 ~l~~~~~~~~~~~v~~~~~--~~~~~~~--~~----~~~~li~~t~~~~~-l~~~l~sR~~~~~~l~~l~~~e~~~il~~ 170 (305)
T TIGR00635 100 LLYPAMEDFRLDIVIGKGP--SARSVRL--DL----PPFTLVGATTRAGM-LTSPLRDRFGIILRLEFYTVEELAEIVSR 170 (305)
T ss_pred HhhHHHhhhheeeeeccCc--cccceee--cC----CCeEEEEecCCccc-cCHHHHhhcceEEEeCCCCHHHHHHHHHH
Confidence 4555566666667777655 3332221 11 22455666777655 444322221 5789999999999999998
Q ss_pred hhccccccccCCChHHHHHHHHHHHHcCCCchHHHHHHHHhc------C-CCCChHHHHHHHHHcccchhhhhhhcCCcc
Q 001843 428 KARIAEDVLQSRSSELIKLKKQILNICDGLPLRVVLLAGLLS------T-KQPSYEEWSKVIERANGDNLVALCYQDLPA 500 (1007)
Q Consensus 428 ~a~~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~g~~L~------~-~~~~~~~w~~~l~~l~i~~~l~~sy~~L~~ 500 (1007)
.+..... .-..+....|++.|+|.|-.+..++..+. . ...+.+.....+.. +..+|..|++
T Consensus 171 ~~~~~~~------~~~~~al~~ia~~~~G~pR~~~~ll~~~~~~a~~~~~~~it~~~v~~~l~~------l~~~~~~l~~ 238 (305)
T TIGR00635 171 SAGLLNV------EIEPEAALEIARRSRGTPRIANRLLRRVRDFAQVRGQKIINRDIALKALEM------LMIDELGLDE 238 (305)
T ss_pred HHHHhCC------CcCHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHH------hCCCCCCCCH
Confidence 8764322 12245678899999999976554444321 1 11123333333332 5667888888
Q ss_pred Cchhhhh-hhccCCCCcccchhHHHHHHHhcccCCCCCCccCCHHHHHHHHHH-HHHhccceEEEe
Q 001843 501 QVKPCIL-YMGLFPREYEIPVRRLIHLWCAEGFAPPDLDLIASEEDLAEMYLE-ELVTRHMIQVIR 564 (1007)
Q Consensus 501 ~~k~cfl-~la~fp~~~~i~~~~Li~~Wiaeg~i~~~~~~~~~~e~~~~~~l~-~Lv~rsll~~~~ 564 (1007)
+.+..+. .++.++.+ .+..+.+.... | .....+...++ .|++++||....
T Consensus 239 ~~~~~L~al~~~~~~~-~~~~~~ia~~l---g----------~~~~~~~~~~e~~Li~~~li~~~~ 290 (305)
T TIGR00635 239 IDRKLLSVLIEQFQGG-PVGLKTLAAAL---G----------EDADTIEDVYEPYLLQIGFLQRTP 290 (305)
T ss_pred HHHHHHHHHHHHhCCC-cccHHHHHHHh---C----------CCcchHHHhhhHHHHHcCCcccCC
Confidence 7776665 44555543 23333322211 1 11234666677 699999997433
No 32
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.87 E-value=7.6e-09 Score=110.24 Aligned_cols=177 Identities=19% Similarity=0.181 Sum_probs=86.6
Q ss_pred EEEEEEcCCCChHHHHHHHHHhhhhcccCCCceEEEEecCCCCCCHHHHHHHH----------HHHHhhhhhhhc-----
Q 001843 274 QVIALIGKAGSGKTTLARIVYNRVYVKRHFTKRAWVHIPIMSMVEDRDVLADI----------LKQIDESLLKVE----- 338 (1007)
Q Consensus 274 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~l~~i----------l~~l~~~~~~~~----- 338 (1007)
+.+.|+|+.|+|||+|++++.+ ..+..-..++|+... ... .......+ ...+........
T Consensus 21 ~~~~l~G~rg~GKTsLl~~~~~--~~~~~~~~~~y~~~~--~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 95 (234)
T PF01637_consen 21 QHILLYGPRGSGKTSLLKEFIN--ELKEKGYKVVYIDFL--EES-NESSLRSFIEETSLADELSEALGISIPSITLEKIS 95 (234)
T ss_dssp SEEEEEESTTSSHHHHHHHHHH--HCT--EECCCHHCCT--TBS-HHHHHHHHHHHHHHHCHCHHHHHHHCCTSTTEEEE
T ss_pred cEEEEEcCCcCCHHHHHHHHHH--HhhhcCCcEEEEecc--cch-hhhHHHHHHHHHHHHHHHHHHHhhhcccccchhhh
Confidence 7899999999999999999999 443222234444433 332 22223333 111221100000
Q ss_pred --cccCHHHHHHHHHHHc--CCCcEEEEEeCcCccC------chhhhhhc-cccC--CCCCCcEEEEEcCCCcccccc--
Q 001843 339 --ATLSAEELMWRITQAL--DDSTFLIVMENAEHQK------SQVWDSFL-GKLC--SFTQCGKIIITTSSTEDFVEP-- 403 (1007)
Q Consensus 339 --~~~~~~~l~~~l~~~L--~~kr~LlVlDdv~~~~------~~~~~~l~-~l~~--~~~~gs~IliTTR~~~~va~~-- 403 (1007)
...........+.+.+ .+++++||+||+.... ......+. .+.. ...+.+.|+++|. .. +...
T Consensus 96 ~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~~S~-~~-~~~~~~ 173 (234)
T PF01637_consen 96 KDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLSQQNVSIVITGSS-DS-LMEEFL 173 (234)
T ss_dssp CTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH----TTEEEEEEESS-HH-HHHHTT
T ss_pred hcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhccccCCceEEEECCc-hH-HHHHhh
Confidence 0111222223333333 2355999999997332 11122233 2222 1033444444444 22 2211
Q ss_pred ------cCCcceeeecCCCCHHHHHHHHHhhhccccccccCCChHHHHHHHHHHHHcCCCchHHHH
Q 001843 404 ------LGAAFSTLHVPGLGKNESWELFLKKARIAEDVLQSRSSELIKLKKQILNICDGLPLRVVL 463 (1007)
Q Consensus 404 ------~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~ 463 (1007)
.+.. ..+.+++|+.+++++++....... . .. +......++|...+||.|..|..
T Consensus 174 ~~~~~~~~~~-~~~~l~~l~~~e~~~~~~~~~~~~-~---~~-~~~~~~~~~i~~~~gG~P~~l~~ 233 (234)
T PF01637_consen 174 DDKSPLFGRF-SHIELKPLSKEEAREFLKELFKEL-I---KL-PFSDEDIEEIYSLTGGNPRYLQE 233 (234)
T ss_dssp -TTSTTTT----EEEE----HHHHHHHHHHHHHCC-----------HHHHHHHHHHHTT-HHHHHH
T ss_pred cccCcccccc-ceEEEeeCCHHHHHHHHHHHHHHh-h---cc-cCCHHHHHHHHHHhCCCHHHHhc
Confidence 1222 559999999999999998865432 1 11 22356679999999999998864
No 33
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=98.79 E-value=4.6e-08 Score=109.74 Aligned_cols=246 Identities=19% Similarity=0.123 Sum_probs=129.1
Q ss_pred EEEEEEcCCCChHHHHHHHHHhhhhcccCCCceEEEEecCCCCCCHHHHHHHHHHHHhhhhhhhccccCH----HHHHHH
Q 001843 274 QVIALIGKAGSGKTTLARIVYNRVYVKRHFTKRAWVHIPIMSMVEDRDVLADILKQIDESLLKVEATLSA----EELMWR 349 (1007)
Q Consensus 274 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~l~~il~~l~~~~~~~~~~~~~----~~l~~~ 349 (1007)
..+.|+|++|+||||+|+.+++ .....+ .++... .......+..++..+... ..--.++. ....+.
T Consensus 52 ~~~ll~GppG~GKT~la~~ia~--~l~~~~---~~~~~~---~~~~~~~l~~~l~~l~~~--~vl~IDEi~~l~~~~~e~ 121 (328)
T PRK00080 52 DHVLLYGPPGLGKTTLANIIAN--EMGVNI---RITSGP---ALEKPGDLAAILTNLEEG--DVLFIDEIHRLSPVVEEI 121 (328)
T ss_pred CcEEEECCCCccHHHHHHHHHH--HhCCCe---EEEecc---cccChHHHHHHHHhcccC--CEEEEecHhhcchHHHHH
Confidence 6778999999999999999999 443322 122221 111122223333322211 00000000 111223
Q ss_pred HHHHcCCCcEEEEEeCcCccCchhhhhhccccCCCCCCcEEEEEcCCCcccccccCCcc-eeeecCCCCHHHHHHHHHhh
Q 001843 350 ITQALDDSTFLIVMENAEHQKSQVWDSFLGKLCSFTQCGKIIITTSSTEDFVEPLGAAF-STLHVPGLGKNESWELFLKK 428 (1007)
Q Consensus 350 l~~~L~~kr~LlVlDdv~~~~~~~~~~l~~l~~~~~~gs~IliTTR~~~~va~~~~~~~-~~~~l~~L~~~ea~~Lf~~~ 428 (1007)
+...+.+.+..+|+|+.. +...+.. .+ .+.+-|..||+... +........ ..+++++++.++..+++.+.
T Consensus 122 l~~~~e~~~~~~~l~~~~--~~~~~~~--~l----~~~~li~at~~~~~-l~~~L~sRf~~~~~l~~~~~~e~~~il~~~ 192 (328)
T PRK00080 122 LYPAMEDFRLDIMIGKGP--AARSIRL--DL----PPFTLIGATTRAGL-LTSPLRDRFGIVQRLEFYTVEELEKIVKRS 192 (328)
T ss_pred HHHHHHhcceeeeeccCc--cccceee--cC----CCceEEeecCCccc-CCHHHHHhcCeeeecCCCCHHHHHHHHHHH
Confidence 344444455555555543 1111100 11 12345666777555 443322221 57899999999999999988
Q ss_pred hccccccccCCChHHHHHHHHHHHHcCCCchHHHHHHHHhcC-------CCCChHHHHHHHHHcccchhhhhhhcCCccC
Q 001843 429 ARIAEDVLQSRSSELIKLKKQILNICDGLPLRVVLLAGLLST-------KQPSYEEWSKVIERANGDNLVALCYQDLPAQ 501 (1007)
Q Consensus 429 a~~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~g~~L~~-------~~~~~~~w~~~l~~l~i~~~l~~sy~~L~~~ 501 (1007)
+..... .-..+.+..|++.|+|.|-.+..+...+.. ...+...-.. ....+...|..|++.
T Consensus 193 ~~~~~~------~~~~~~~~~ia~~~~G~pR~a~~~l~~~~~~a~~~~~~~I~~~~v~~------~l~~~~~~~~~l~~~ 260 (328)
T PRK00080 193 ARILGV------EIDEEGALEIARRSRGTPRIANRLLRRVRDFAQVKGDGVITKEIADK------ALDMLGVDELGLDEM 260 (328)
T ss_pred HHHcCC------CcCHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCCCCCHHHHHH------HHHHhCCCcCCCCHH
Confidence 765432 122457889999999999654444443211 0111111112 223456777888887
Q ss_pred chhhhh-hhccCCCCcccchhHHHHHHHhcccCCCCCCccCCHHHHHHHHHH-HHHhccceEEEe
Q 001843 502 VKPCIL-YMGLFPREYEIPVRRLIHLWCAEGFAPPDLDLIASEEDLAEMYLE-ELVTRHMIQVIR 564 (1007)
Q Consensus 502 ~k~cfl-~la~fp~~~~i~~~~Li~~Wiaeg~i~~~~~~~~~~e~~~~~~l~-~Lv~rsll~~~~ 564 (1007)
.+..+. ....|+.+ .+..+.+.... - .. .+.++..++ .|++.+|++...
T Consensus 261 ~~~~l~~~~~~~~~~-~~~~~~~a~~l-----g----~~----~~~~~~~~e~~Li~~~li~~~~ 311 (328)
T PRK00080 261 DRKYLRTIIEKFGGG-PVGLDTLAAAL-----G----EE----RDTIEDVYEPYLIQQGFIQRTP 311 (328)
T ss_pred HHHHHHHHHHHcCCC-ceeHHHHHHHH-----C----CC----cchHHHHhhHHHHHcCCcccCC
Confidence 777665 55566655 34444433222 1 11 223455566 899999997443
No 34
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.78 E-value=5.2e-08 Score=105.44 Aligned_cols=154 Identities=17% Similarity=0.225 Sum_probs=98.2
Q ss_pred EEEEEEcCCCChHHHHHHHHHhhhhcccCCCceEEEEecCCCCCCHHHHHHHHHHHHhhhhhhhccccCHHHHHHHHHHH
Q 001843 274 QVIALIGKAGSGKTTLARIVYNRVYVKRHFTKRAWVHIPIMSMVEDRDVLADILKQIDESLLKVEATLSAEELMWRITQA 353 (1007)
Q Consensus 274 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~l~~il~~l~~~~~~~~~~~~~~~l~~~l~~~ 353 (1007)
.-.-.||++|+||||||+.++. .....| ..++ ...+-..-+++++++... ..
T Consensus 49 ~SmIl~GPPG~GKTTlA~liA~--~~~~~f-----~~~s--Av~~gvkdlr~i~e~a~~-------------------~~ 100 (436)
T COG2256 49 HSMILWGPPGTGKTTLARLIAG--TTNAAF-----EALS--AVTSGVKDLREIIEEARK-------------------NR 100 (436)
T ss_pred ceeEEECCCCCCHHHHHHHHHH--hhCCce-----EEec--cccccHHHHHHHHHHHHH-------------------HH
Confidence 5667899999999999999999 555555 3444 333333444444433322 22
Q ss_pred cCCCcEEEEEeCcCccCchhhhhhccccCCCCCCcEEEE--EcCCCc-ccccccCCcceeeecCCCCHHHHHHHHHhhhc
Q 001843 354 LDDSTFLIVMENAEHQKSQVWDSFLGKLCSFTQCGKIII--TTSSTE-DFVEPLGAAFSTLHVPGLGKNESWELFLKKAR 430 (1007)
Q Consensus 354 L~~kr~LlVlDdv~~~~~~~~~~l~~l~~~~~~gs~Ili--TTR~~~-~va~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~ 430 (1007)
..+++.+|++|.|..-+..+-+.+.+.. -.|.-|+| ||.++. .+-....+.+.++.+++|+.++-.+++.+-+-
T Consensus 101 ~~gr~tiLflDEIHRfnK~QQD~lLp~v---E~G~iilIGATTENPsF~ln~ALlSR~~vf~lk~L~~~di~~~l~ra~~ 177 (436)
T COG2256 101 LLGRRTILFLDEIHRFNKAQQDALLPHV---ENGTIILIGATTENPSFELNPALLSRARVFELKPLSSEDIKKLLKRALL 177 (436)
T ss_pred hcCCceEEEEehhhhcChhhhhhhhhhh---cCCeEEEEeccCCCCCeeecHHHhhhhheeeeecCCHHHHHHHHHHHHh
Confidence 3489999999999866666666665444 44777777 888876 23334444448999999999999999988332
Q ss_pred cccccccCCCh-HHHHHHHHHHHHcCCCc
Q 001843 431 IAEDVLQSRSS-ELIKLKKQILNICDGLP 458 (1007)
Q Consensus 431 ~~~~~~~~~~~-~~~~~~~~I~~~c~GlP 458 (1007)
........... -.++...-|+..++|--
T Consensus 178 ~~~rgl~~~~~~i~~~a~~~l~~~s~GD~ 206 (436)
T COG2256 178 DEERGLGGQIIVLDEEALDYLVRLSNGDA 206 (436)
T ss_pred hhhcCCCcccccCCHHHHHHHHHhcCchH
Confidence 22211011111 12345566777777754
No 35
>PF05729 NACHT: NACHT domain
Probab=98.77 E-value=5e-08 Score=97.87 Aligned_cols=144 Identities=19% Similarity=0.264 Sum_probs=86.0
Q ss_pred EEEEEEcCCCChHHHHHHHHHhhhhcccC----CCceEEEEecCCCCCCHH---HHHHHHHHHHhhhhhhhccccCHHHH
Q 001843 274 QVIALIGKAGSGKTTLARIVYNRVYVKRH----FTKRAWVHIPIMSMVEDR---DVLADILKQIDESLLKVEATLSAEEL 346 (1007)
Q Consensus 274 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----F~~~~wv~~s~~~~~~~~---~~l~~il~~l~~~~~~~~~~~~~~~l 346 (1007)
|++.|+|.+|+||||+++.++.+-..... +...+|++.. ...... .+...|..+.... .......
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~l~~~~~~~------~~~~~~~ 72 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLR--DISDSNNSRSLADLLFDQLPES------IAPIEEL 72 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeeh--hhhhccccchHHHHHHHhhccc------hhhhHHH
Confidence 58999999999999999999985333322 3456777765 332222 2222222222211 1111111
Q ss_pred HHHHHHHcCCCcEEEEEeCcCccCc--h-----hhhhhc--cccCCCCCCcEEEEEcCCCccc---ccccCCcceeeecC
Q 001843 347 MWRITQALDDSTFLIVMENAEHQKS--Q-----VWDSFL--GKLCSFTQCGKIIITTSSTEDF---VEPLGAAFSTLHVP 414 (1007)
Q Consensus 347 ~~~l~~~L~~kr~LlVlDdv~~~~~--~-----~~~~l~--~l~~~~~~gs~IliTTR~~~~v---a~~~~~~~~~~~l~ 414 (1007)
... -.-..++++||+|+++.... . .+..+. -+......+.+++||+|... . ....... ..+++.
T Consensus 73 ~~~--~~~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~-~~~~~~~~~~~-~~~~l~ 148 (166)
T PF05729_consen 73 LQE--LLEKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRA-FPDLRRRLKQA-QILELE 148 (166)
T ss_pred HHH--HHHcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCCh-HHHHHHhcCCC-cEEEEC
Confidence 111 12257899999999973221 1 122222 22221256789999999877 4 3333343 689999
Q ss_pred CCCHHHHHHHHHhhh
Q 001843 415 GLGKNESWELFLKKA 429 (1007)
Q Consensus 415 ~L~~~ea~~Lf~~~a 429 (1007)
+|++++..+++.++.
T Consensus 149 ~~~~~~~~~~~~~~f 163 (166)
T PF05729_consen 149 PFSEEDIKQYLRKYF 163 (166)
T ss_pred CCCHHHHHHHHHHHh
Confidence 999999999987753
No 36
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.74 E-value=1.6e-09 Score=111.26 Aligned_cols=130 Identities=25% Similarity=0.199 Sum_probs=102.3
Q ss_pred hhcCCCCCeEEeeecCCCchhhHHHHHHHhhcCCCCCeEEEeecCCCCCCcccccCCCCCcEEEecccC-CCCCcCccCC
Q 001843 785 FRRLTSLRKLGLKCSSTTSTSLKKEIIGAVLQLSELHSLKLICETPSYLPLLEMAEHYKLQKLYLSGHL-PPNSVIGDRS 863 (1007)
Q Consensus 785 l~~L~~L~~L~l~~~~~~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~L~g~~-~~lp~~~i~~ 863 (1007)
+.....|..|+++++. ...+. .+..-++.++.|+++.|... ...++..+++|+.|+|++|. .++.. |-..
T Consensus 280 ~dTWq~LtelDLS~N~--I~~iD----ESvKL~Pkir~L~lS~N~i~--~v~nLa~L~~L~~LDLS~N~Ls~~~G-wh~K 350 (490)
T KOG1259|consen 280 ADTWQELTELDLSGNL--ITQID----ESVKLAPKLRRLILSQNRIR--TVQNLAELPQLQLLDLSGNLLAECVG-WHLK 350 (490)
T ss_pred cchHhhhhhccccccc--hhhhh----hhhhhccceeEEecccccee--eehhhhhcccceEeecccchhHhhhh-hHhh
Confidence 3344567888999876 44444 66777899999999987655 45668889999999999988 77776 8888
Q ss_pred CCCCceEEEEEeeecCCCCcCccccCCCCcEEEeecCCcCCCceeecCCCCCCCcEEEeccCC
Q 001843 864 FPPNVVTLTLSQLRLEYDPMPILGRLRQLKILRLFGGSYTGEEMSCSSGEFPNLLVLKLWKLN 926 (1007)
Q Consensus 864 ~l~~L~~L~L~~~~l~~~~~~~l~~Lp~L~~L~L~~~~~~~~~l~~~~~~fp~L~~L~L~~~~ 926 (1007)
+.|++.|.|++|.+ ..++.+++|-+|..|++++|.+..-+-.-..+.+|+|+.|.|.+.|
T Consensus 351 -LGNIKtL~La~N~i--E~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NP 410 (490)
T KOG1259|consen 351 -LGNIKTLKLAQNKI--ETLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNP 410 (490)
T ss_pred -hcCEeeeehhhhhH--hhhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCC
Confidence 99999999999987 5677889999999999998876543334456778888888888754
No 37
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.63 E-value=2.7e-09 Score=118.80 Aligned_cols=171 Identities=22% Similarity=0.140 Sum_probs=115.3
Q ss_pred CCcceEEEEeccccCCCCchhhhhhhccccccCCCCcccEEEecCCCCCCcCCCccccCCCcCcEEecccCCCcccCccc
Q 001843 634 SWRLHSYLVFDSRIRGTPAKQIGIILGKCISKRRLGMLKVLDLEGVYKPMLTNNNALGRLPFLEYLGLRSTFIDSLPDST 713 (1007)
Q Consensus 634 ~~~LRsL~l~~~~~~~~~~~~i~~~l~~~~~~~~l~~Lr~L~Ls~~~l~~~~lp~~i~~L~~Lr~L~L~~n~i~~LP~~i 713 (1007)
+..-....+..|.+.. +|.-+ ..|-.|..|.|..|.+- .+|..++++..|.||+|+.|++..+|..+
T Consensus 74 ltdt~~aDlsrNR~~e---------lp~~~--~~f~~Le~liLy~n~~r--~ip~~i~~L~~lt~l~ls~NqlS~lp~~l 140 (722)
T KOG0532|consen 74 LTDTVFADLSRNRFSE---------LPEEA--CAFVSLESLILYHNCIR--TIPEAICNLEALTFLDLSSNQLSHLPDGL 140 (722)
T ss_pred ccchhhhhcccccccc---------CchHH--HHHHHHHHHHHHhccce--ecchhhhhhhHHHHhhhccchhhcCChhh
Confidence 3344445566666542 22334 56667777788888777 77888888888888888888888888777
Q ss_pred ccCCCCCEEeecCCcccccccccccc---ceecccccccccccccccccccCcCCCccccceeeCCCcccChHhhhcCCC
Q 001843 714 PILFCLATLDVSHTKVQRLPYAFWPS---RHLYLNWIFLATNVFRHPQFVKWETSLQTLWGLCIKADEVQSLDYFRRLTS 790 (1007)
Q Consensus 714 ~~L~~L~~L~L~~~~l~~lP~~i~~L---r~L~l~~~~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~ 790 (1007)
+.|+ |+.|.+++|+++.+|.+++-+ .+|+.+ .|. ...+|..++.|.+|+.|......- ...+.+++.|+
T Consensus 141 C~lp-Lkvli~sNNkl~~lp~~ig~~~tl~~ld~s---~ne-i~slpsql~~l~slr~l~vrRn~l--~~lp~El~~Lp- 212 (722)
T KOG0532|consen 141 CDLP-LKVLIVSNNKLTSLPEEIGLLPTLAHLDVS---KNE-IQSLPSQLGYLTSLRDLNVRRNHL--EDLPEELCSLP- 212 (722)
T ss_pred hcCc-ceeEEEecCccccCCcccccchhHHHhhhh---hhh-hhhchHHhhhHHHHHHHHHhhhhh--hhCCHHHhCCc-
Confidence 7765 788888888888888877733 666666 443 556777777777777774322221 34566666554
Q ss_pred CCeEEeeecCCCchhhHHHHHHHhhcCCCCCeEEEeecCCC
Q 001843 791 LRKLGLKCSSTTSTSLKKEIIGAVLQLSELHSLKLICETPS 831 (1007)
Q Consensus 791 L~~L~l~~~~~~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~ 831 (1007)
|.+|++++|. ...++ -.|.+|++|+.|.|.+|...
T Consensus 213 Li~lDfScNk--is~iP----v~fr~m~~Lq~l~LenNPLq 247 (722)
T KOG0532|consen 213 LIRLDFSCNK--ISYLP----VDFRKMRHLQVLQLENNPLQ 247 (722)
T ss_pred eeeeecccCc--eeecc----hhhhhhhhheeeeeccCCCC
Confidence 7777877765 55555 77777888888888775544
No 38
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.59 E-value=4.3e-07 Score=105.01 Aligned_cols=158 Identities=15% Similarity=0.188 Sum_probs=93.3
Q ss_pred EEEEEEcCCCChHHHHHHHHHhhhhcccCCCceEEEEecCCCCCCHHHHHHHHHHHHhhhhhhhccccCHHHHHHHHHHH
Q 001843 274 QVIALIGKAGSGKTTLARIVYNRVYVKRHFTKRAWVHIPIMSMVEDRDVLADILKQIDESLLKVEATLSAEELMWRITQA 353 (1007)
Q Consensus 274 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~l~~il~~l~~~~~~~~~~~~~~~l~~~l~~~ 353 (1007)
..+.++|++|+||||+|+.+++. .... |+.++ ........++.++..+... .
T Consensus 37 ~~ilL~GppGtGKTtLA~~ia~~--~~~~-----~~~l~--a~~~~~~~ir~ii~~~~~~-------------------~ 88 (413)
T PRK13342 37 SSMILWGPPGTGKTTLARIIAGA--TDAP-----FEALS--AVTSGVKDLREVIEEARQR-------------------R 88 (413)
T ss_pred ceEEEECCCCCCHHHHHHHHHHH--hCCC-----EEEEe--cccccHHHHHHHHHHHHHh-------------------h
Confidence 56788999999999999999993 3333 33333 2221122222222222110 1
Q ss_pred cCCCcEEEEEeCcCccCchhhhhhccccCCCCCCcEEEE--EcCCCc-ccccccCCcceeeecCCCCHHHHHHHHHhhhc
Q 001843 354 LDDSTFLIVMENAEHQKSQVWDSFLGKLCSFTQCGKIII--TTSSTE-DFVEPLGAAFSTLHVPGLGKNESWELFLKKAR 430 (1007)
Q Consensus 354 L~~kr~LlVlDdv~~~~~~~~~~l~~l~~~~~~gs~Ili--TTR~~~-~va~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~ 430 (1007)
..+++.+|++|+++.-.....+.+...... |..++| ||.+.. .+.....+.+..+.+.+++.++.+.++.+.+.
T Consensus 89 ~~g~~~vL~IDEi~~l~~~~q~~LL~~le~---~~iilI~att~n~~~~l~~aL~SR~~~~~~~~ls~e~i~~lL~~~l~ 165 (413)
T PRK13342 89 SAGRRTILFIDEIHRFNKAQQDALLPHVED---GTITLIGATTENPSFEVNPALLSRAQVFELKPLSEEDIEQLLKRALE 165 (413)
T ss_pred hcCCceEEEEechhhhCHHHHHHHHHHhhc---CcEEEEEeCCCChhhhccHHHhccceeeEeCCCCHHHHHHHHHHHHH
Confidence 145788999999986555566666533332 445555 344432 12223333337899999999999999988653
Q ss_pred cccccccCCChHHHHHHHHHHHHcCCCchHHHHHH
Q 001843 431 IAEDVLQSRSSELIKLKKQILNICDGLPLRVVLLA 465 (1007)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~g 465 (1007)
..... . ..-..+....|++.|+|.+..+.-+.
T Consensus 166 ~~~~~--~-i~i~~~al~~l~~~s~Gd~R~aln~L 197 (413)
T PRK13342 166 DKERG--L-VELDDEALDALARLANGDARRALNLL 197 (413)
T ss_pred HhhcC--C-CCCCHHHHHHHHHhCCCCHHHHHHHH
Confidence 31110 0 01224567788999999987654443
No 39
>COG3903 Predicted ATPase [General function prediction only]
Probab=98.57 E-value=1e-07 Score=104.08 Aligned_cols=282 Identities=17% Similarity=0.200 Sum_probs=183.1
Q ss_pred EEEEEEcCCCChHHHHHHHHHhhhhcccCCCc-eEEEEecCCCCCCHHHHHHHHHHHHhhhhhhhccccCHHHHHHHHHH
Q 001843 274 QVIALIGKAGSGKTTLARIVYNRVYVKRHFTK-RAWVHIPIMSMVEDRDVLADILKQIDESLLKVEATLSAEELMWRITQ 352 (1007)
Q Consensus 274 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~-~~wv~~s~~~~~~~~~~l~~il~~l~~~~~~~~~~~~~~~l~~~l~~ 352 (1007)
|.+.++|.|||||||++-++.. +...|.. +.++... .-.+...+.-.+...++.. ..+.+.....+..
T Consensus 15 RlvtL~g~ggvgkttl~~~~a~---~~~~~~~~v~~vdl~--pitD~~~v~~~~ag~~gl~------~~~g~~~~~~~~~ 83 (414)
T COG3903 15 RLVTLTGAGGVGKTTLALQAAH---AASEYADGVAFVDLA--PITDPALVFPTLAGALGLH------VQPGDSAVDTLVR 83 (414)
T ss_pred heeeeeccCccceehhhhhhHh---Hhhhcccceeeeecc--ccCchhHhHHHHHhhcccc------cccchHHHHHHHH
Confidence 8999999999999999999988 5667865 5555555 4555566666666666664 1223334455667
Q ss_pred HcCCCcEEEEEeCcCccCchhhhhhc-cccCCCCCCcEEEEEcCCCcccccccCCcceeeecCCCCHH-HHHHHHHhhhc
Q 001843 353 ALDDSTFLIVMENAEHQKSQVWDSFL-GKLCSFTQCGKIIITTSSTEDFVEPLGAAFSTLHVPGLGKN-ESWELFLKKAR 430 (1007)
Q Consensus 353 ~L~~kr~LlVlDdv~~~~~~~~~~l~-~l~~~~~~gs~IliTTR~~~~va~~~~~~~~~~~l~~L~~~-ea~~Lf~~~a~ 430 (1007)
+..++|.++|+||..+.-. .-..+. ++..+ +..-.|+.|+|..- ...+. ..+.+++|+.- ++.++|...+.
T Consensus 84 ~~~~rr~llvldncehl~~-~~a~~i~all~~-~~~~~~~atsre~~----l~~ge-~~~~~~~L~~~d~a~~lf~~ra~ 156 (414)
T COG3903 84 RIGDRRALLVLDNCEHLLD-ACAALIVALLGA-CPRLAILATSREAI----LVAGE-VHRRVPSLSLFDEAIELFVCRAV 156 (414)
T ss_pred HHhhhhHHHHhcCcHHHHH-HHHHHHHHHHcc-chhhhhHHHhHhhh----ccccc-ccccCCccccCCchhHHHHHHHH
Confidence 7788999999999752111 111122 55555 55667999999765 22222 67778888765 78999987765
Q ss_pred cccccccCCChHHHHHHHHHHHHcCCCchHHHHHHHHhcCCCCChHHHHHHHHH----cc------------cchhhhhh
Q 001843 431 IAEDVLQSRSSELIKLKKQILNICDGLPLRVVLLAGLLSTKQPSYEEWSKVIER----AN------------GDNLVALC 494 (1007)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~g~~L~~~~~~~~~w~~~l~~----l~------------i~~~l~~s 494 (1007)
..... ..........+.+|.++..|.|++|...++..+.-. ..+-...++. +. ....+.+|
T Consensus 157 ~~~~~-f~l~~~~~a~v~~icr~ldg~~laielaaarv~sl~--~~~i~~~L~drf~ll~~~~r~a~~~~qtl~asl~ws 233 (414)
T COG3903 157 LVALS-FWLTDDNAAAVAEICRRLDGIPLAIELAAARVRSLS--PDEIAAGLRDRFRLLTGGARLAVLRQQTLRASLDWS 233 (414)
T ss_pred Hhccc-eeecCCchHHHHHHHHHhhcchHHHHHHHHHHHhcC--HHHHHHHHhhHHHHHhcccccchhHHHhccchhhhh
Confidence 44332 122334467888999999999999999999998765 3322222221 11 88999999
Q ss_pred hcCCccCchhhhhhhccCCCCcccchhHHHHHHHhcccCCCCCCccCCHHHHHHHHHHHHHhccceEEEeecCCCCcceE
Q 001843 495 YQDLPAQVKPCILYMGLFPREYEIPVRRLIHLWCAEGFAPPDLDLIASEEDLAEMYLEELVTRHMIQVIRWRLDGSPKTC 574 (1007)
Q Consensus 495 y~~L~~~~k~cfl~la~fp~~~~i~~~~Li~~Wiaeg~i~~~~~~~~~~e~~~~~~l~~Lv~rsll~~~~~~~~g~~~~~ 574 (1007)
|.-|....+--|..++.|...+... ...|.+.|-. ..-..-.....+..+++.+++..... .....|
T Consensus 234 ~~lLtgwe~~~~~rLa~~~g~f~~~----l~~~~a~g~~------~~~~~y~~~~a~~ll~~kslv~a~~~---~~~a~~ 300 (414)
T COG3903 234 YALLTGWERALFGRLAVFVGGFDLG----LALAVAAGAD------VDVPRYLVLLALTLLVDKSLVVALDL---LGRARY 300 (414)
T ss_pred hHhhhhHHHHHhcchhhhhhhhccc----HHHHHhcCCc------cccchHHHHHHHHHHhhccchhhhhh---hhHHHH
Confidence 9999999999999999998876544 2345443322 11122234445667888888764431 111235
Q ss_pred EcCHHHHHHHHhhhh
Q 001843 575 CMPGVLYDILRPKAE 589 (1007)
Q Consensus 575 ~mHdlv~d~~~~~~~ 589 (1007)
+.-+-++.|+..+..
T Consensus 301 Rl~eT~r~YalaeL~ 315 (414)
T COG3903 301 RLLETGRRYALAELH 315 (414)
T ss_pred HHHHHHHHHHHHHHH
Confidence 555556666655544
No 40
>PRK06893 DNA replication initiation factor; Validated
Probab=98.57 E-value=2.9e-07 Score=97.47 Aligned_cols=151 Identities=11% Similarity=0.107 Sum_probs=92.0
Q ss_pred EEEEEEcCCCChHHHHHHHHHhhhhcccCCCceEEEEecCCCCCCHHHHHHHHHHHHhhhhhhhccccCHHHHHHHHHHH
Q 001843 274 QVIALIGKAGSGKTTLARIVYNRVYVKRHFTKRAWVHIPIMSMVEDRDVLADILKQIDESLLKVEATLSAEELMWRITQA 353 (1007)
Q Consensus 274 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~l~~il~~l~~~~~~~~~~~~~~~l~~~l~~~ 353 (1007)
+.+.|+|.+|+|||+||+++++. .......+.|+++. ... .. ...+.+.
T Consensus 40 ~~l~l~G~~G~GKThL~~ai~~~--~~~~~~~~~y~~~~--~~~---~~------------------------~~~~~~~ 88 (229)
T PRK06893 40 PFFYIWGGKSSGKSHLLKAVSNH--YLLNQRTAIYIPLS--KSQ---YF------------------------SPAVLEN 88 (229)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH--HHHcCCCeEEeeHH--Hhh---hh------------------------hHHHHhh
Confidence 67899999999999999999994 43344456777654 100 00 0011112
Q ss_pred cCCCcEEEEEeCcCccC-chhhhhhc-cccC-CCCCCcEEEEEcCCC----------cccccccCCcceeeecCCCCHHH
Q 001843 354 LDDSTFLIVMENAEHQK-SQVWDSFL-GKLC-SFTQCGKIIITTSST----------EDFVEPLGAAFSTLHVPGLGKNE 420 (1007)
Q Consensus 354 L~~kr~LlVlDdv~~~~-~~~~~~l~-~l~~-~~~~gs~IliTTR~~----------~~va~~~~~~~~~~~l~~L~~~e 420 (1007)
+. +.-+|||||+|... ...|+... .+.+ ....|..+||+|.+. . +...+... ..+++++++.++
T Consensus 89 ~~-~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~-L~sRl~~g-~~~~l~~pd~e~ 165 (229)
T PRK06893 89 LE-QQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPD-LASRLTWG-EIYQLNDLTDEQ 165 (229)
T ss_pred cc-cCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchh-HHHHHhcC-CeeeCCCCCHHH
Confidence 22 23499999998432 34565332 2222 113355665544432 3 44444444 789999999999
Q ss_pred HHHHHHhhhccccccccCCChHHHHHHHHHHHHcCCCchHHHHH
Q 001843 421 SWELFLKKARIAEDVLQSRSSELIKLKKQILNICDGLPLRVVLL 464 (1007)
Q Consensus 421 a~~Lf~~~a~~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~ 464 (1007)
.++++.+.+....- . -.++...-|++++.|-.-.+..+
T Consensus 166 ~~~iL~~~a~~~~l---~---l~~~v~~~L~~~~~~d~r~l~~~ 203 (229)
T PRK06893 166 KIIVLQRNAYQRGI---E---LSDEVANFLLKRLDRDMHTLFDA 203 (229)
T ss_pred HHHHHHHHHHHcCC---C---CCHHHHHHHHHhccCCHHHHHHH
Confidence 99999998875432 1 12456677888887665554433
No 41
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.56 E-value=3.6e-09 Score=117.89 Aligned_cols=194 Identities=20% Similarity=0.126 Sum_probs=150.6
Q ss_pred CCCcccEEEecCCCCCCcCCCccccCCCcCcEEecccCCCcccCcccccCCCCCEEeecCCcccccccccccc--ceecc
Q 001843 667 RLGMLKVLDLEGVYKPMLTNNNALGRLPFLEYLGLRSTFIDSLPDSTPILFCLATLDVSHTKVQRLPYAFWPS--RHLYL 744 (1007)
Q Consensus 667 ~l~~Lr~L~Ls~~~l~~~~lp~~i~~L~~Lr~L~L~~n~i~~LP~~i~~L~~L~~L~L~~~~l~~lP~~i~~L--r~L~l 744 (1007)
.+..-...||+.|++. .+|..++.+..|..|.|..|.|..+|..+++|..|.+|||+.|.+..+|..++.| +.|.+
T Consensus 73 ~ltdt~~aDlsrNR~~--elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lpLkvli~ 150 (722)
T KOG0532|consen 73 DLTDTVFADLSRNRFS--ELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDLPLKVLIV 150 (722)
T ss_pred cccchhhhhccccccc--cCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhhcCChhhhcCcceeEEE
Confidence 4455567899999999 9999999999999999999999999999999999999999999999999999988 88888
Q ss_pred cccccccccccccccccCcCCCccccceeeCCCcccChHhhhcCCCCCeEEeeecCCCchhhHHHHHHHhhcCCCCCeEE
Q 001843 745 NWIFLATNVFRHPQFVKWETSLQTLWGLCIKADEVQSLDYFRRLTSLRKLGLKCSSTTSTSLKKEIIGAVLQLSELHSLK 824 (1007)
Q Consensus 745 ~~~~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~l~~~~~~~l~~l~~L~~L~ 824 (1007)
+ ++. ...+|..++.+..|..|+...++. ...+..++.|..|+.|.+..+. ...++ ..+..|+ |..|+
T Consensus 151 s---NNk-l~~lp~~ig~~~tl~~ld~s~nei--~slpsql~~l~slr~l~vrRn~--l~~lp----~El~~Lp-Li~lD 217 (722)
T KOG0532|consen 151 S---NNK-LTSLPEEIGLLPTLAHLDVSKNEI--QSLPSQLGYLTSLRDLNVRRNH--LEDLP----EELCSLP-LIRLD 217 (722)
T ss_pred e---cCc-cccCCcccccchhHHHhhhhhhhh--hhchHHhhhHHHHHHHHHhhhh--hhhCC----HHHhCCc-eeeee
Confidence 8 544 779999999777888775444432 3567788999999999988775 44455 6666443 78888
Q ss_pred EeecCCCCCCcccccCCCCCcEEEecccCCCCCcCccCC--CCCCceEEEEEee
Q 001843 825 LICETPSYLPLLEMAEHYKLQKLYLSGHLPPNSVIGDRS--FPPNVVTLTLSQL 876 (1007)
Q Consensus 825 L~~~~~~~~~~~~l~~~~~L~~L~L~g~~~~lp~~~i~~--~l~~L~~L~L~~~ 876 (1007)
+++|.... .+-.|..+..|+.|-|.+|.-.-|+.-+.. ...=.++|+..-|
T Consensus 218 fScNkis~-iPv~fr~m~~Lq~l~LenNPLqSPPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 218 FSCNKISY-LPVDFRKMRHLQVLQLENNPLQSPPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred cccCceee-cchhhhhhhhheeeeeccCCCCCChHHHHhccceeeeeeecchhc
Confidence 88887766 677788888888888888773333312211 0223456666666
No 42
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.55 E-value=3.4e-06 Score=100.15 Aligned_cols=282 Identities=12% Similarity=0.164 Sum_probs=145.5
Q ss_pred EEEEEEcCCCChHHHHHHHHHhhhhc---ccCCCceEEEEecCCCCCCHHHHHHHHHHHHhhhhhhhccccCHHHHHHHH
Q 001843 274 QVIALIGKAGSGKTTLARIVYNRVYV---KRHFTKRAWVHIPIMSMVEDRDVLADILKQIDESLLKVEATLSAEELMWRI 350 (1007)
Q Consensus 274 ~vi~I~G~gGiGKTtLa~~v~~~~~~---~~~F~~~~wv~~s~~~~~~~~~~l~~il~~l~~~~~~~~~~~~~~~l~~~l 350 (1007)
.++-|+|.+|.|||+.++.|.+...- ....+...++.+.++.-.+...++..|++++... ..............+
T Consensus 782 nvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~sIYqvI~qqL~g~--~P~~GlsS~evLerL 859 (1164)
T PTZ00112 782 QILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNAAYQVLYKQLFNK--KPPNALNSFKILDRL 859 (1164)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHHHHHHHHHHHcCC--CCCccccHHHHHHHH
Confidence 68889999999999999999874211 1223323334443337778889999999988543 112223334455555
Q ss_pred HHHcC---CCcEEEEEeCcCccCchhhhhhccccCC-CCCCcEEEE--EcCCCc-------ccccccCCcceeeecCCCC
Q 001843 351 TQALD---DSTFLIVMENAEHQKSQVWDSFLGKLCS-FTQCGKIII--TTSSTE-------DFVEPLGAAFSTLHVPGLG 417 (1007)
Q Consensus 351 ~~~L~---~kr~LlVlDdv~~~~~~~~~~l~~l~~~-~~~gs~Ili--TTR~~~-------~va~~~~~~~~~~~l~~L~ 417 (1007)
...+. ....+||||+|+.-....-+.|..+.++ ...+++|+| +|.... ++...++. ..+..+|++
T Consensus 860 F~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~~s~SKLiLIGISNdlDLperLdPRLRSRLg~--eeIvF~PYT 937 (1164)
T PTZ00112 860 FNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPTKINSKLVLIAISNTMDLPERLIPRCRSRLAF--GRLVFSPYK 937 (1164)
T ss_pred HhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhhccCCeEEEEEecCchhcchhhhhhhhhcccc--ccccCCCCC
Confidence 55442 2245899999973221111112222211 023455554 332211 02222221 347789999
Q ss_pred HHHHHHHHHhhhccccccccCCChHHHHHHHHHHHHcCCCchHHHHHHHHhcCCCC---ChHHHHHHHHHcccchhhhhh
Q 001843 418 KNESWELFLKKARIAEDVLQSRSSELIKLKKQILNICDGLPLRVVLLAGLLSTKQP---SYEEWSKVIERANGDNLVALC 494 (1007)
Q Consensus 418 ~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~g~~L~~~~~---~~~~w~~~l~~l~i~~~l~~s 494 (1007)
.++-.+++..++...... -.+..++-+|+.++..-|-.=.||.++-........ +...-..+...+ ....+.-.
T Consensus 938 aEQL~dILk~RAe~A~gV--LdDdAIELIArkVAq~SGDARKALDILRrAgEikegskVT~eHVrkAleei-E~srI~e~ 1014 (1164)
T PTZ00112 938 GDEIEKIIKERLENCKEI--IDHTAIQLCARKVANVSGDIRKALQICRKAFENKRGQKIVPRDITEATNQL-FDSPLTNA 1014 (1164)
T ss_pred HHHHHHHHHHHHHhCCCC--CCHHHHHHHHHhhhhcCCHHHHHHHHHHHHHhhcCCCccCHHHHHHHHHHH-HhhhHHHH
Confidence 999999999887642211 123344455555554455556666666554432211 233333333332 12223344
Q ss_pred hcCCccCchhhhhhhccC-C--CCcccchhHHHHHH--HhcccCCCCCCccCCHHHHHHHHHHHHHhccceEEEe
Q 001843 495 YQDLPAQVKPCILYMGLF-P--REYEIPVRRLIHLW--CAEGFAPPDLDLIASEEDLAEMYLEELVTRHMIQVIR 564 (1007)
Q Consensus 495 y~~L~~~~k~cfl~la~f-p--~~~~i~~~~Li~~W--iaeg~i~~~~~~~~~~e~~~~~~l~~Lv~rsll~~~~ 564 (1007)
...||.+.|-.++-+... - ....++...+.... +++-.- ..-+....-+....++.+|...++|-...
T Consensus 1015 IktLPlHqKLVLlALIlLlk~tg~~~i~TGEVYerYk~Lce~~G--k~iGv~plTqRV~d~L~eL~~LGIIl~ep 1087 (1164)
T PTZ00112 1015 INYLPWPFKMFLTCLIVELRMLNDFIIPYKKVLNRYKVLVETSG--KYIGMCSNNELFKIMLDKLVKMGILLIRP 1087 (1164)
T ss_pred HHcCCHHHHHHHHHHHHHHhhcCCCceeHHHHHHHHHHHHHhhh--hhcCCCCcHHHHHHHHHHHHhcCeEEecC
Confidence 567888866554433321 1 12134444443322 333000 00011122225677888888888886543
No 43
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.52 E-value=5.4e-08 Score=96.98 Aligned_cols=87 Identities=25% Similarity=0.233 Sum_probs=26.9
Q ss_pred cCCCcceEEEEeccccCCCCchhhhhhhccccccCCCCcccEEEecCCCCCCcCCCccccCCCcCcEEecccCCCcccCc
Q 001843 632 LLSWRLHSYLVFDSRIRGTPAKQIGIILGKCISKRRLGMLKVLDLEGVYKPMLTNNNALGRLPFLEYLGLRSTFIDSLPD 711 (1007)
Q Consensus 632 ~~~~~LRsL~l~~~~~~~~~~~~i~~~l~~~~~~~~l~~Lr~L~Ls~~~l~~~~lp~~i~~L~~Lr~L~L~~n~i~~LP~ 711 (1007)
.+..++|.|.+.++.+. .+...- ..+.+|++|+|++|.+. .++ .+..+++|+.|++++|.|+.+++
T Consensus 16 ~n~~~~~~L~L~~n~I~---------~Ie~L~--~~l~~L~~L~Ls~N~I~--~l~-~l~~L~~L~~L~L~~N~I~~i~~ 81 (175)
T PF14580_consen 16 NNPVKLRELNLRGNQIS---------TIENLG--ATLDKLEVLDLSNNQIT--KLE-GLPGLPRLKTLDLSNNRISSISE 81 (175)
T ss_dssp -----------------------------S----TT-TT--EEE-TTS--S----T-T----TT--EEE--SS---S-CH
T ss_pred ccccccccccccccccc---------cccchh--hhhcCCCEEECCCCCCc--ccc-CccChhhhhhcccCCCCCCcccc
Confidence 44556777888877764 222321 35677888888888877 554 56778888888888888888765
Q ss_pred cc-ccCCCCCEEeecCCccccc
Q 001843 712 ST-PILFCLATLDVSHTKVQRL 732 (1007)
Q Consensus 712 ~i-~~L~~L~~L~L~~~~l~~l 732 (1007)
.+ ..+++|++|++++|+|..+
T Consensus 82 ~l~~~lp~L~~L~L~~N~I~~l 103 (175)
T PF14580_consen 82 GLDKNLPNLQELYLSNNKISDL 103 (175)
T ss_dssp HHHHH-TT--EEE-TTS---SC
T ss_pred chHHhCCcCCEEECcCCcCCCh
Confidence 55 3578888888888866654
No 44
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.52 E-value=2.5e-08 Score=108.24 Aligned_cols=205 Identities=17% Similarity=0.123 Sum_probs=113.9
Q ss_pred CCCCcccEEEecCCCCCCcCCC--ccccCCCcCcEEecccCCCccc---CcccccCCCCCEEeecCCccccccccccccc
Q 001843 666 RRLGMLKVLDLEGVYKPMLTNN--NALGRLPFLEYLGLRSTFIDSL---PDSTPILFCLATLDVSHTKVQRLPYAFWPSR 740 (1007)
Q Consensus 666 ~~l~~Lr~L~Ls~~~l~~~~lp--~~i~~L~~Lr~L~L~~n~i~~L---P~~i~~L~~L~~L~L~~~~l~~lP~~i~~Lr 740 (1007)
+++++||...|.++.+. ..+ .....|++++.|+|+.|-+... -.-+..|++|+.|+|+.|.+...-.+
T Consensus 118 sn~kkL~~IsLdn~~V~--~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s----- 190 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVE--DAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISS----- 190 (505)
T ss_pred hhHHhhhheeecCcccc--ccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccc-----
Confidence 56777777777777765 333 2556677777777777655432 22345667777777766644321100
Q ss_pred eecccccccccccccccccccCcCCCccccceeeCCCcccChHhhhcCCCCCeEEeeecCCCchhhHHHHHHHhhcCCCC
Q 001843 741 HLYLNWIFLATNVFRHPQFVKWETSLQTLWGLCIKADEVQSLDYFRRLTSLRKLGLKCSSTTSTSLKKEIIGAVLQLSEL 820 (1007)
Q Consensus 741 ~L~l~~~~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~l~~~~~~~l~~l~~L 820 (1007)
.. -..+++|+.|.++.|.-....+. ..+..+++|
T Consensus 191 ----------------------------------------~~--~~~l~~lK~L~l~~CGls~k~V~----~~~~~fPsl 224 (505)
T KOG3207|consen 191 ----------------------------------------NT--TLLLSHLKQLVLNSCGLSWKDVQ----WILLTFPSL 224 (505)
T ss_pred ----------------------------------------cc--hhhhhhhheEEeccCCCCHHHHH----HHHHhCCcH
Confidence 00 01345666666666651122222 556667777
Q ss_pred CeEEEeecCCCCCCcccccCCCCCcEEEecccC-CCCCc-CccCCCCCCceEEEEEeeecCCCCcCcc------ccCCCC
Q 001843 821 HSLKLICETPSYLPLLEMAEHYKLQKLYLSGHL-PPNSV-IGDRSFPPNVVTLTLSQLRLEYDPMPIL------GRLRQL 892 (1007)
Q Consensus 821 ~~L~L~~~~~~~~~~~~l~~~~~L~~L~L~g~~-~~lp~-~~i~~~l~~L~~L~L~~~~l~~~~~~~l------~~Lp~L 892 (1007)
+.|.|..|......-....-+..|+.|+|+++. ..++. ...+. ++.|..|+++.|.+.....+.. ..+|+|
T Consensus 225 ~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~-l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL 303 (505)
T KOG3207|consen 225 EVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGT-LPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKL 303 (505)
T ss_pred HHhhhhcccccceecchhhhhhHHhhccccCCccccccccccccc-ccchhhhhccccCcchhcCCCccchhhhcccccc
Confidence 777777753211111222234567777777765 33331 03445 7777778887777655444333 456777
Q ss_pred cEEEeecCCcCCCceeecCCCCCCCcEEEecc
Q 001843 893 KILRLFGGSYTGEEMSCSSGEFPNLLVLKLWK 924 (1007)
Q Consensus 893 ~~L~L~~~~~~~~~l~~~~~~fp~L~~L~L~~ 924 (1007)
++|++..|.............+++|+.|.+.+
T Consensus 304 ~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~ 335 (505)
T KOG3207|consen 304 EYLNISENNIRDWRSLNHLRTLENLKHLRITL 335 (505)
T ss_pred eeeecccCccccccccchhhccchhhhhhccc
Confidence 77777766654333333334456666666543
No 45
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.48 E-value=2e-06 Score=91.19 Aligned_cols=158 Identities=18% Similarity=0.266 Sum_probs=102.2
Q ss_pred EEEEEEcCCCChHHHHHHHHHhhhhcccCCCceEEEEecCCCCCCHHHHHHHHHHHHhhhhhhhccccCHHHHHHHHHHH
Q 001843 274 QVIALIGKAGSGKTTLARIVYNRVYVKRHFTKRAWVHIPIMSMVEDRDVLADILKQIDESLLKVEATLSAEELMWRITQA 353 (1007)
Q Consensus 274 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~l~~il~~l~~~~~~~~~~~~~~~l~~~l~~~ 353 (1007)
..+.+||++|+||||||+.+.+. -+.+ ...||..| .......-+++|.++.... ..
T Consensus 163 pSmIlWGppG~GKTtlArlia~t--sk~~--SyrfvelS--At~a~t~dvR~ife~aq~~------------------~~ 218 (554)
T KOG2028|consen 163 PSMILWGPPGTGKTTLARLIAST--SKKH--SYRFVELS--ATNAKTNDVRDIFEQAQNE------------------KS 218 (554)
T ss_pred CceEEecCCCCchHHHHHHHHhh--cCCC--ceEEEEEe--ccccchHHHHHHHHHHHHH------------------Hh
Confidence 67789999999999999999993 3333 25678887 6666666666666665443 23
Q ss_pred cCCCcEEEEEeCcCccCchhhhhhccccCCCCCCcEEEE--EcCCCc-ccccccCCcceeeecCCCCHHHHHHHHHhhhc
Q 001843 354 LDDSTFLIVMENAEHQKSQVWDSFLGKLCSFTQCGKIII--TTSSTE-DFVEPLGAAFSTLHVPGLGKNESWELFLKKAR 430 (1007)
Q Consensus 354 L~~kr~LlVlDdv~~~~~~~~~~l~~l~~~~~~gs~Ili--TTR~~~-~va~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~ 430 (1007)
+..+|.+|++|.|..-+..+-+.+.+.. .+|+-++| ||.++. ++-...-+.+.++.|++|+.++-..++.+-.-
T Consensus 219 l~krkTilFiDEiHRFNksQQD~fLP~V---E~G~I~lIGATTENPSFqln~aLlSRC~VfvLekL~~n~v~~iL~raia 295 (554)
T KOG2028|consen 219 LTKRKTILFIDEIHRFNKSQQDTFLPHV---ENGDITLIGATTENPSFQLNAALLSRCRVFVLEKLPVNAVVTILMRAIA 295 (554)
T ss_pred hhcceeEEEeHHhhhhhhhhhhccccee---ccCceEEEecccCCCccchhHHHHhccceeEeccCCHHHHHHHHHHHHH
Confidence 4678999999999744444444443332 55777777 888876 22233334448999999999999988877322
Q ss_pred ---cccccccCCC----hHHHHHHHHHHHHcCCCc
Q 001843 431 ---IAEDVLQSRS----SELIKLKKQILNICDGLP 458 (1007)
Q Consensus 431 ---~~~~~~~~~~----~~~~~~~~~I~~~c~GlP 458 (1007)
.........+ .-...+..-++..|.|-.
T Consensus 296 ~l~dser~~~~l~n~s~~ve~siidyla~lsdGDa 330 (554)
T KOG2028|consen 296 SLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDA 330 (554)
T ss_pred hhccccccCCCCCCcchhhhHHHHHHHHHhcCchH
Confidence 1111100111 123345556666777754
No 46
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.47 E-value=1.6e-07 Score=93.55 Aligned_cols=128 Identities=26% Similarity=0.284 Sum_probs=45.0
Q ss_pred CCCCcccEEEecCCCCCCcCCCcccc-CCCcCcEEecccCCCcccCcccccCCCCCEEeecCCcccccccc----ccccc
Q 001843 666 RRLGMLKVLDLEGVYKPMLTNNNALG-RLPFLEYLGLRSTFIDSLPDSTPILFCLATLDVSHTKVQRLPYA----FWPSR 740 (1007)
Q Consensus 666 ~~l~~Lr~L~Ls~~~l~~~~lp~~i~-~L~~Lr~L~L~~n~i~~LP~~i~~L~~L~~L~L~~~~l~~lP~~----i~~Lr 740 (1007)
.+...+|.|+|++|.+. .+ ..++ .+.+|+.|+|++|.|+.++ .+..|++|++|++++|.|+.++.. +.+|+
T Consensus 16 ~n~~~~~~L~L~~n~I~--~I-e~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~ 91 (175)
T PF14580_consen 16 NNPVKLRELNLRGNQIS--TI-ENLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQ 91 (175)
T ss_dssp -----------------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS---S-CHHHHHH-TT--
T ss_pred ccccccccccccccccc--cc-cchhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCCCCccccchHHhCCcCC
Confidence 56778999999999998 55 3566 5889999999999999997 688999999999999999887543 45668
Q ss_pred eecccccccccccccccccccCcCCCccccceeeCCCcccChHhhhcCCCCCeEEeeecC-CCchhhHHHHHHHhhcCCC
Q 001843 741 HLYLNWIFLATNVFRHPQFVKWETSLQTLWGLCIKADEVQSLDYFRRLTSLRKLGLKCSS-TTSTSLKKEIIGAVLQLSE 819 (1007)
Q Consensus 741 ~L~l~~~~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~-~~~~~l~~~~~~~l~~l~~ 819 (1007)
+|+++ ++. |..+. .+..+..+++|+.|++.++. ....... ...+..+++
T Consensus 92 ~L~L~---~N~--------I~~l~----------------~l~~L~~l~~L~~L~L~~NPv~~~~~YR---~~vi~~lP~ 141 (175)
T PF14580_consen 92 ELYLS---NNK--------ISDLN----------------ELEPLSSLPKLRVLSLEGNPVCEKKNYR---LFVIYKLPS 141 (175)
T ss_dssp EEE-T---TS-----------SCC----------------CCGGGGG-TT--EEE-TT-GGGGSTTHH---HHHHHH-TT
T ss_pred EEECc---CCc--------CCChH----------------HhHHHHcCCCcceeeccCCcccchhhHH---HHHHHHcCh
Confidence 88877 443 11121 12334566778888887776 2222222 144566677
Q ss_pred CCeEEEee
Q 001843 820 LHSLKLIC 827 (1007)
Q Consensus 820 L~~L~L~~ 827 (1007)
|+.|+-..
T Consensus 142 Lk~LD~~~ 149 (175)
T PF14580_consen 142 LKVLDGQD 149 (175)
T ss_dssp -SEETTEE
T ss_pred hheeCCEE
Confidence 77665443
No 47
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.46 E-value=4.4e-06 Score=98.98 Aligned_cols=103 Identities=6% Similarity=-0.006 Sum_probs=73.0
Q ss_pred CCcEEEEEeCcCccCchhhhhhc-cccCCCCCCcEEEEEcCCCcccccccCCcceeeecCCCCHHHHHHHHHhhhccccc
Q 001843 356 DSTFLIVMENAEHQKSQVWDSFL-GKLCSFTQCGKIIITTSSTEDFVEPLGAAFSTLHVPGLGKNESWELFLKKARIAED 434 (1007)
Q Consensus 356 ~kr~LlVlDdv~~~~~~~~~~l~-~l~~~~~~gs~IliTTR~~~~va~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~ 434 (1007)
++.-++|||+++.-+...|+.+. .+-.. ....++|+||.+..++...+.+.+..+.+++++.++..+.+.+.+.....
T Consensus 118 gr~KVIIIDEah~LT~~A~NALLKtLEEP-P~~v~FILaTtd~~KIp~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~~EgI 196 (830)
T PRK07003 118 ARFKVYMIDEVHMLTNHAFNAMLKTLEEP-PPHVKFILATTDPQKIPVTVLSRCLQFNLKQMPAGHIVSHLERILGEERI 196 (830)
T ss_pred CCceEEEEeChhhCCHHHHHHHHHHHHhc-CCCeEEEEEECChhhccchhhhheEEEecCCcCHHHHHHHHHHHHHHcCC
Confidence 44558999999976667788777 44333 45678888777766576666666689999999999999999887654321
Q ss_pred cccCCChHHHHHHHHHHHHcCCCc-hHHHHHH
Q 001843 435 VLQSRSSELIKLKKQILNICDGLP-LRVVLLA 465 (1007)
Q Consensus 435 ~~~~~~~~~~~~~~~I~~~c~GlP-Lai~~~g 465 (1007)
.-..+....|++.++|.. -|+.++-
T Consensus 197 ------~id~eAL~lIA~~A~GsmRdALsLLd 222 (830)
T PRK07003 197 ------AFEPQALRLLARAAQGSMRDALSLTD 222 (830)
T ss_pred ------CCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 122466778999998854 5655543
No 48
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.46 E-value=3.4e-08 Score=107.22 Aligned_cols=180 Identities=18% Similarity=0.111 Sum_probs=79.1
Q ss_pred hhcCCCCCeEEeeecC-CCchhhHHHHHHHhhcCCCCCeEEEeecCCCCCCccc-ccCCCCCcEEEecccC---CCCCcC
Q 001843 785 FRRLTSLRKLGLKCSS-TTSTSLKKEIIGAVLQLSELHSLKLICETPSYLPLLE-MAEHYKLQKLYLSGHL---PPNSVI 859 (1007)
Q Consensus 785 l~~L~~L~~L~l~~~~-~~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~-l~~~~~L~~L~L~g~~---~~lp~~ 859 (1007)
...+++++.|+++.+- .+...+. .....+++|+.|+|+.|....+.-.. -..+++|+.|.|++|. ..+-.
T Consensus 142 ~k~~~~v~~LdLS~NL~~nw~~v~----~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~- 216 (505)
T KOG3207|consen 142 SKILPNVRDLDLSRNLFHNWFPVL----KIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQW- 216 (505)
T ss_pred hhhCCcceeecchhhhHHhHHHHH----HHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHH-
Confidence 4455666666666543 2233333 55556666666666654332211100 0124456666665544 11111
Q ss_pred ccCCCCCCceEEEEEeeecCCCCcCccccCCCCcEEEeecCCcCCCceeecCCCCCCCcEEEeccCCCCcceEEcC----
Q 001843 860 GDRSFPPNVVTLTLSQLRLEYDPMPILGRLRQLKILRLFGGSYTGEEMSCSSGEFPNLLVLKLWKLNRLRQWRIKE---- 935 (1007)
Q Consensus 860 ~i~~~l~~L~~L~L~~~~l~~~~~~~l~~Lp~L~~L~L~~~~~~~~~l~~~~~~fp~L~~L~L~~~~~L~~l~~~~---- 935 (1007)
.... +|+|..|.|..|...........-+..|+.|+|++|.+.........+.||.|..|.++.+ .+.++.+..
T Consensus 217 ~~~~-fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~t-gi~si~~~d~~s~ 294 (505)
T KOG3207|consen 217 ILLT-FPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSST-GIASIAEPDVESL 294 (505)
T ss_pred HHHh-CCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhcccc-CcchhcCCCccch
Confidence 1112 5556666665553111111122234455555565555443332233345555555555553 233332211
Q ss_pred ---CCCccccEeEeeccCCCC-CC--cCccccccCccEEEeccC
Q 001843 936 ---GAMPCLRQLEIRSCGYLV-PP--TGLKHVTSSLREFLLTNM 973 (1007)
Q Consensus 936 ---~~~p~L~~L~l~~c~~L~-lp--~~l~~L~~~L~~L~l~~c 973 (1007)
..||+|+.|++..++ +. ++ ..+..+ ++|+.|.+..+
T Consensus 295 ~kt~~f~kL~~L~i~~N~-I~~w~sl~~l~~l-~nlk~l~~~~n 336 (505)
T KOG3207|consen 295 DKTHTFPKLEYLNISENN-IRDWRSLNHLRTL-ENLKHLRITLN 336 (505)
T ss_pred hhhcccccceeeecccCc-cccccccchhhcc-chhhhhhcccc
Confidence 135566666665533 22 22 123444 44555544443
No 49
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.41 E-value=2.2e-06 Score=91.00 Aligned_cols=153 Identities=14% Similarity=0.196 Sum_probs=88.5
Q ss_pred EEEEEEcCCCChHHHHHHHHHhhhhcccCCCceEEEEecCCCCCCHHHHHHHHHHHHhhhhhhhccccCHHHHHHHHHHH
Q 001843 274 QVIALIGKAGSGKTTLARIVYNRVYVKRHFTKRAWVHIPIMSMVEDRDVLADILKQIDESLLKVEATLSAEELMWRITQA 353 (1007)
Q Consensus 274 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~l~~il~~l~~~~~~~~~~~~~~~l~~~l~~~ 353 (1007)
..|.|+|..|+|||+||+.+++. ........++++++ .-.+ . . ..+...
T Consensus 39 ~~lll~G~~G~GKT~la~~~~~~--~~~~~~~~~~i~~~--~~~~------~-----------------~----~~~~~~ 87 (226)
T TIGR03420 39 RFLYLWGESGSGKSHLLQAACAA--AEERGKSAIYLPLA--ELAQ------A-----------------D----PEVLEG 87 (226)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH--HHhcCCcEEEEeHH--HHHH------h-----------------H----HHHHhh
Confidence 78899999999999999999984 33334455666654 1110 0 0 011112
Q ss_pred cCCCcEEEEEeCcCccCch-hh-hhhc-cccCCCCCCcEEEEEcCCCc-c-------cccccCCcceeeecCCCCHHHHH
Q 001843 354 LDDSTFLIVMENAEHQKSQ-VW-DSFL-GKLCSFTQCGKIIITTSSTE-D-------FVEPLGAAFSTLHVPGLGKNESW 422 (1007)
Q Consensus 354 L~~kr~LlVlDdv~~~~~~-~~-~~l~-~l~~~~~~gs~IliTTR~~~-~-------va~~~~~~~~~~~l~~L~~~ea~ 422 (1007)
+.. .-+|||||++..... .| +.+. .+......+.++|+||+... . +...+... ..++++++++++-.
T Consensus 88 ~~~-~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L~~r~~~~-~~i~l~~l~~~e~~ 165 (226)
T TIGR03420 88 LEQ-ADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRTRLAWG-LVFQLPPLSDEEKI 165 (226)
T ss_pred ccc-CCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHHHHHHhcC-eeEecCCCCHHHHH
Confidence 222 238999999843222 23 3333 22211123457889888542 0 11122112 67899999999989
Q ss_pred HHHHhhhccccccccCCChHHHHHHHHHHHHcCCCchHHHHHH
Q 001843 423 ELFLKKARIAEDVLQSRSSELIKLKKQILNICDGLPLRVVLLA 465 (1007)
Q Consensus 423 ~Lf~~~a~~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~g 465 (1007)
.++...+..... . -..+....|++.+.|.|..+.-+-
T Consensus 166 ~~l~~~~~~~~~---~---~~~~~l~~L~~~~~gn~r~L~~~l 202 (226)
T TIGR03420 166 AALQSRAARRGL---Q---LPDEVADYLLRHGSRDMGSLMALL 202 (226)
T ss_pred HHHHHHHHHcCC---C---CCHHHHHHHHHhccCCHHHHHHHH
Confidence 988765432111 1 123555777777888887666553
No 50
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.40 E-value=4.9e-06 Score=92.72 Aligned_cols=159 Identities=18% Similarity=0.253 Sum_probs=102.4
Q ss_pred EEEEEEcCCCChHHHHHHHHHhhh----hcccCCCceEEEEecCCCCCCHHHHHHHHHHHHhhhhhhhccccCHHHHHHH
Q 001843 274 QVIALIGKAGSGKTTLARIVYNRV----YVKRHFTKRAWVHIPIMSMVEDRDVLADILKQIDESLLKVEATLSAEELMWR 349 (1007)
Q Consensus 274 ~vi~I~G~gGiGKTtLa~~v~~~~----~~~~~F~~~~wv~~s~~~~~~~~~~l~~il~~l~~~~~~~~~~~~~~~l~~~ 349 (1007)
..+.++|+.|+||||+|+.+++.- ....|.|...|.... .......+ ++++...+...
T Consensus 27 ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~-~~~i~v~~-ir~~~~~~~~~---------------- 88 (313)
T PRK05564 27 HAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPIN-KKSIGVDD-IRNIIEEVNKK---------------- 88 (313)
T ss_pred ceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEecccc-CCCCCHHH-HHHHHHHHhcC----------------
Confidence 678899999999999999999831 123345554554422 02222222 33333333221
Q ss_pred HHHHcCCCcEEEEEeCcCccCchhhhhhc-cccCCCCCCcEEEEEcCCCcccccccCCcceeeecCCCCHHHHHHHHHhh
Q 001843 350 ITQALDDSTFLIVMENAEHQKSQVWDSFL-GKLCSFTQCGKIIITTSSTEDFVEPLGAAFSTLHVPGLGKNESWELFLKK 428 (1007)
Q Consensus 350 l~~~L~~kr~LlVlDdv~~~~~~~~~~l~-~l~~~~~~gs~IliTTR~~~~va~~~~~~~~~~~l~~L~~~ea~~Lf~~~ 428 (1007)
-..+++-++|+|+++.-+...|+.+. .+.+. ..++.+|++|.+...+.....+.+..+.+.++++++....+.+.
T Consensus 89 ---p~~~~~kv~iI~~ad~m~~~a~naLLK~LEep-p~~t~~il~~~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~l~~~ 164 (313)
T PRK05564 89 ---PYEGDKKVIIIYNSEKMTEQAQNAFLKTIEEP-PKGVFIILLCENLEQILDTIKSRCQIYKLNRLSKEEIEKFISYK 164 (313)
T ss_pred ---cccCCceEEEEechhhcCHHHHHHHHHHhcCC-CCCeEEEEEeCChHhCcHHHHhhceeeeCCCcCHHHHHHHHHHH
Confidence 11245567777877755778888888 66555 67888888887766455555555589999999999998877654
Q ss_pred hccccccccCCChHHHHHHHHHHHHcCCCchHHHHH
Q 001843 429 ARIAEDVLQSRSSELIKLKKQILNICDGLPLRVVLL 464 (1007)
Q Consensus 429 a~~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~ 464 (1007)
..+ . + ...+..++..++|.|.-+...
T Consensus 165 ~~~-~------~---~~~~~~l~~~~~g~~~~a~~~ 190 (313)
T PRK05564 165 YND-I------K---EEEKKSAIAFSDGIPGKVEKF 190 (313)
T ss_pred hcC-C------C---HHHHHHHHHHcCCCHHHHHHH
Confidence 321 1 1 234678889999988765433
No 51
>PF13173 AAA_14: AAA domain
Probab=98.38 E-value=1.2e-06 Score=83.70 Aligned_cols=119 Identities=20% Similarity=0.247 Sum_probs=79.1
Q ss_pred EEEEEEcCCCChHHHHHHHHHhhhhcccCCCceEEEEecCCCCCCHHHHHHHHHHHHhhhhhhhccccCHHHHHHHHHHH
Q 001843 274 QVIALIGKAGSGKTTLARIVYNRVYVKRHFTKRAWVHIPIMSMVEDRDVLADILKQIDESLLKVEATLSAEELMWRITQA 353 (1007)
Q Consensus 274 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~l~~il~~l~~~~~~~~~~~~~~~l~~~l~~~ 353 (1007)
+++.|.|+.|+|||||+++++.+.. ....++++++. ....... .+.+ ..+.+.+.
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~---~~~~~~yi~~~--~~~~~~~-------------------~~~~-~~~~~~~~ 57 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLL---PPENILYINFD--DPRDRRL-------------------ADPD-LLEYFLEL 57 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhc---ccccceeeccC--CHHHHHH-------------------hhhh-hHHHHHHh
Confidence 7999999999999999999998422 33456777665 2111000 0000 23334444
Q ss_pred cCCCcEEEEEeCcCccCchhhhhhc-cccCCCCCCcEEEEEcCCCcccc-----cccCCcceeeecCCCCHHHH
Q 001843 354 LDDSTFLIVMENAEHQKSQVWDSFL-GKLCSFTQCGKIIITTSSTEDFV-----EPLGAAFSTLHVPGLGKNES 421 (1007)
Q Consensus 354 L~~kr~LlVlDdv~~~~~~~~~~l~-~l~~~~~~gs~IliTTR~~~~va-----~~~~~~~~~~~l~~L~~~ea 421 (1007)
...++.+|+||++. ....|.... .+.+. ....+|++|+.... .. ....+....+++.||+-.|.
T Consensus 58 ~~~~~~~i~iDEiq--~~~~~~~~lk~l~d~-~~~~~ii~tgS~~~-~l~~~~~~~l~gr~~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 58 IKPGKKYIFIDEIQ--YLPDWEDALKFLVDN-GPNIKIILTGSSSS-LLSKDIAESLAGRVIEIELYPLSFREF 127 (128)
T ss_pred hccCCcEEEEehhh--hhccHHHHHHHHHHh-ccCceEEEEccchH-HHhhcccccCCCeEEEEEECCCCHHHh
Confidence 44578899999998 666777766 77666 56689999998766 33 22233336789999998774
No 52
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.37 E-value=3.4e-07 Score=105.97 Aligned_cols=172 Identities=25% Similarity=0.234 Sum_probs=108.7
Q ss_pred CCCCcccEEEecCCCCCCcCCCccccCCC-cCcEEecccCCCcccCcccccCCCCCEEeecCCccccccccc---cccce
Q 001843 666 RRLGMLKVLDLEGVYKPMLTNNNALGRLP-FLEYLGLRSTFIDSLPDSTPILFCLATLDVSHTKVQRLPYAF---WPSRH 741 (1007)
Q Consensus 666 ~~l~~Lr~L~Ls~~~l~~~~lp~~i~~L~-~Lr~L~L~~n~i~~LP~~i~~L~~L~~L~L~~~~l~~lP~~i---~~Lr~ 741 (1007)
..++.+..|++.++.+. .+|..++.+. +|++|++++|.+..+|..++.+++|+.|++++|.+..+|... ..|+.
T Consensus 113 ~~~~~l~~L~l~~n~i~--~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~ 190 (394)
T COG4886 113 LELTNLTSLDLDNNNIT--DIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNN 190 (394)
T ss_pred hcccceeEEecCCcccc--cCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhhhhhhhhhhhhhhhh
Confidence 45677888888888888 7888888775 888888888888888888888888888888888888888843 44477
Q ss_pred ecccccccccccccccccccCcCCCccccceeeCCCcccChHhhhcCCCCCeEEeeecCCCchhhHHHHHHHhhcCCCCC
Q 001843 742 LYLNWIFLATNVFRHPQFVKWETSLQTLWGLCIKADEVQSLDYFRRLTSLRKLGLKCSSTTSTSLKKEIIGAVLQLSELH 821 (1007)
Q Consensus 742 L~l~~~~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~l~~~~~~~l~~l~~L~ 821 (1007)
|+++ ++. ...+|..++.+..|++|...... ....+..+..+.++..|.+..+. ...+. ..+..+++|+
T Consensus 191 L~ls---~N~-i~~l~~~~~~~~~L~~l~~~~N~--~~~~~~~~~~~~~l~~l~l~~n~--~~~~~----~~~~~l~~l~ 258 (394)
T COG4886 191 LDLS---GNK-ISDLPPEIELLSALEELDLSNNS--IIELLSSLSNLKNLSGLELSNNK--LEDLP----ESIGNLSNLE 258 (394)
T ss_pred eecc---CCc-cccCchhhhhhhhhhhhhhcCCc--ceecchhhhhcccccccccCCce--eeecc----chhccccccc
Confidence 8887 554 45666655555566666322211 12344455566666666555443 21112 4445555555
Q ss_pred eEEEeecCCCCCCcccccCCCCCcEEEecccC
Q 001843 822 SLKLICETPSYLPLLEMAEHYKLQKLYLSGHL 853 (1007)
Q Consensus 822 ~L~L~~~~~~~~~~~~l~~~~~L~~L~L~g~~ 853 (1007)
.|+++++.... ...+.+..+|+.|+++++.
T Consensus 259 ~L~~s~n~i~~--i~~~~~~~~l~~L~~s~n~ 288 (394)
T COG4886 259 TLDLSNNQISS--ISSLGSLTNLRELDLSGNS 288 (394)
T ss_pred eeccccccccc--cccccccCccCEEeccCcc
Confidence 55555543332 1224444555555555443
No 53
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.33 E-value=1.3e-08 Score=104.93 Aligned_cols=132 Identities=23% Similarity=0.098 Sum_probs=68.5
Q ss_pred cCcCCCccccceeeCCCcccChHhhhcCCCCCeEEeeecC-CCchhhHHHHHHHhhcCCCCCeEEEeecCCCCCCcccc-
Q 001843 761 KWETSLQTLWGLCIKADEVQSLDYFRRLTSLRKLGLKCSS-TTSTSLKKEIIGAVLQLSELHSLKLICETPSYLPLLEM- 838 (1007)
Q Consensus 761 ~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~-~~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l- 838 (1007)
..+++|+.|+.-. ...+......+.+-.+|+.|+|+.+. -....+. -.+.+++.|.+|+|+|+....+....+
T Consensus 207 s~C~kLk~lSlEg-~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~----ll~~scs~L~~LNlsWc~l~~~~Vtv~V 281 (419)
T KOG2120|consen 207 SQCSKLKNLSLEG-LRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQ----LLLSSCSRLDELNLSWCFLFTEKVTVAV 281 (419)
T ss_pred HHHHhhhhccccc-cccCcHHHHHHhccccceeeccccccccchhHHH----HHHHhhhhHhhcCchHhhccchhhhHHH
Confidence 3444555543222 22224466778888888888888876 2222333 556778888888888865443221111
Q ss_pred cC-CCCCcEEEecccCCCCCcC----ccCCCCCCceEEEEEeee-cCCCCcCccccCCCCcEEEee
Q 001843 839 AE-HYKLQKLYLSGHLPPNSVI----GDRSFPPNVVTLTLSQLR-LEYDPMPILGRLRQLKILRLF 898 (1007)
Q Consensus 839 ~~-~~~L~~L~L~g~~~~lp~~----~i~~~l~~L~~L~L~~~~-l~~~~~~~l~~Lp~L~~L~L~ 898 (1007)
.. -++|..|+|+|+...+-.. .... +|+|..|+|++|. ++......+.+++.|++|.|+
T Consensus 282 ~hise~l~~LNlsG~rrnl~~sh~~tL~~r-cp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSls 346 (419)
T KOG2120|consen 282 AHISETLTQLNLSGYRRNLQKSHLSTLVRR-CPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLS 346 (419)
T ss_pred hhhchhhhhhhhhhhHhhhhhhHHHHHHHh-CCceeeeccccccccCchHHHHHHhcchheeeehh
Confidence 11 2467777777654222110 1123 5666666666653 222222334444555555554
No 54
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.32 E-value=1.2e-06 Score=84.17 Aligned_cols=116 Identities=23% Similarity=0.399 Sum_probs=79.8
Q ss_pred EEEEEEcCCCChHHHHHHHHHhhhhcc---cCCCceEEEEecCCCCCCHHHHHHHHHHHHhhhhhhhccccCHHHHHHHH
Q 001843 274 QVIALIGKAGSGKTTLARIVYNRVYVK---RHFTKRAWVHIPIMSMVEDRDVLADILKQIDESLLKVEATLSAEELMWRI 350 (1007)
Q Consensus 274 ~vi~I~G~gGiGKTtLa~~v~~~~~~~---~~F~~~~wv~~s~~~~~~~~~~l~~il~~l~~~~~~~~~~~~~~~l~~~l 350 (1007)
+++.|+|.+|+|||+++++++++.... ..-..++|+.+. ...+...+...|+.+++... ....+...+.+.+
T Consensus 5 ~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~i~~~l~~~~---~~~~~~~~l~~~~ 79 (131)
T PF13401_consen 5 RILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCP--SSRTPRDFAQEILEALGLPL---KSRQTSDELRSLL 79 (131)
T ss_dssp --EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHH--HHSSHHHHHHHHHHHHT-SS---SSTS-HHHHHHHH
T ss_pred cccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeC--CCCCHHHHHHHHHHHhCccc---cccCCHHHHHHHH
Confidence 899999999999999999999842110 013456799988 77789999999999998761 1235677777888
Q ss_pred HHHcCCCcE-EEEEeCcCcc-CchhhhhhccccCCCCCCcEEEEEcCC
Q 001843 351 TQALDDSTF-LIVMENAEHQ-KSQVWDSFLGKLCSFTQCGKIIITTSS 396 (1007)
Q Consensus 351 ~~~L~~kr~-LlVlDdv~~~-~~~~~~~l~~l~~~~~~gs~IliTTR~ 396 (1007)
.+.+...+. +||+|+++.- +...++.++.+.+ ..+.+||+..+.
T Consensus 80 ~~~l~~~~~~~lviDe~~~l~~~~~l~~l~~l~~--~~~~~vvl~G~~ 125 (131)
T PF13401_consen 80 IDALDRRRVVLLVIDEADHLFSDEFLEFLRSLLN--ESNIKVVLVGTP 125 (131)
T ss_dssp HHHHHHCTEEEEEEETTHHHHTHHHHHHHHHHTC--SCBEEEEEEESS
T ss_pred HHHHHhcCCeEEEEeChHhcCCHHHHHHHHHHHh--CCCCeEEEEECh
Confidence 888876554 9999999855 5455555554433 445667666554
No 55
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.31 E-value=7.4e-06 Score=98.77 Aligned_cols=186 Identities=18% Similarity=0.138 Sum_probs=106.1
Q ss_pred EEEEEEcCCCChHHHHHHHHHhhhhcccCC---CceEEEEecCCC-CCCHHHHHHHHHH---------------HHhhhh
Q 001843 274 QVIALIGKAGSGKTTLARIVYNRVYVKRHF---TKRAWVHIPIMS-MVEDRDVLADILK---------------QIDESL 334 (1007)
Q Consensus 274 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F---~~~~wv~~s~~~-~~~~~~~l~~il~---------------~l~~~~ 334 (1007)
..+.|+|++|+||||+|+.+++.......+ ...-|+.+.+.. ..+...+...++. ..+...
T Consensus 176 ~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~d~~~i~~~llg~~~~~~~~~a~~~l~~~gl~~ 255 (615)
T TIGR02903 176 QHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRWDPREVTNPLLGSVHDPIYQGARRDLAETGVPE 255 (615)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccCCHHHHhHHhcCCccHHHHHHHHHHHHHcCCCc
Confidence 679999999999999999999854333333 123455553111 1122222111111 111000
Q ss_pred h---------------hhccccCHHHHHHHHHHHcCCCcEEEEEeCcCccCchhhhhhc-cccCCCCCCcEEEE--EcCC
Q 001843 335 L---------------KVEATLSAEELMWRITQALDDSTFLIVMENAEHQKSQVWDSFL-GKLCSFTQCGKIII--TTSS 396 (1007)
Q Consensus 335 ~---------------~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~~~~~~~~l~-~l~~~~~~gs~Ili--TTR~ 396 (1007)
. .+-...+ ...+..+.+.+++++++++-|+.|..+...|+.++ .+... .+...|+| ||++
T Consensus 256 ~~~g~v~~asgGvL~LDEi~~Ld-~~~Q~~Ll~~Le~~~v~~~~~~~~~~~~~~~~~ik~~~~~~-~~~~~VLI~aTt~~ 333 (615)
T TIGR02903 256 PKTGLVTDAHGGVLFIDEIGELD-PLLQNKLLKVLEDKRVEFSSSYYDPDDPNVPKYIKKLFEEG-APADFVLIGATTRD 333 (615)
T ss_pred hhcCchhhcCCCeEEEeccccCC-HHHHHHHHHHHhhCeEEeecceeccCCcccchhhhhhcccC-ccceEEEEEecccc
Confidence 0 0001111 23467788888899999998888866677788888 55444 45555555 6775
Q ss_pred CcccccccCCcceeeecCCCCHHHHHHHHHhhhccccccccCCChHHHHHHHHHHHHcCCCchHHHHHHHH
Q 001843 397 TEDFVEPLGAAFSTLHVPGLGKNESWELFLKKARIAEDVLQSRSSELIKLKKQILNICDGLPLRVVLLAGL 467 (1007)
Q Consensus 397 ~~~va~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~g~~ 467 (1007)
...+..........+.+.+++.+|.+.++.+.+..... ..+ .+....|.+.+..-+-|+..++..
T Consensus 334 ~~~l~~aLrSR~~~i~~~pls~edi~~Il~~~a~~~~v---~ls---~eal~~L~~ys~~gRraln~L~~~ 398 (615)
T TIGR02903 334 PEEINPALRSRCAEVFFEPLTPEDIALIVLNAAEKINV---HLA---AGVEELIARYTIEGRKAVNILADV 398 (615)
T ss_pred ccccCHHHHhceeEEEeCCCCHHHHHHHHHHHHHHcCC---CCC---HHHHHHHHHCCCcHHHHHHHHHHH
Confidence 54233333333367889999999999999987653211 111 234445555554445555555443
No 56
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.31 E-value=6e-07 Score=103.94 Aligned_cols=190 Identities=26% Similarity=0.271 Sum_probs=127.8
Q ss_pred cEEEecCCCCCCcCCCccccCCCcCcEEecccCCCcccCcccccCC-CCCEEeecCCcccccccccccc---ceeccccc
Q 001843 672 KVLDLEGVYKPMLTNNNALGRLPFLEYLGLRSTFIDSLPDSTPILF-CLATLDVSHTKVQRLPYAFWPS---RHLYLNWI 747 (1007)
Q Consensus 672 r~L~Ls~~~l~~~~lp~~i~~L~~Lr~L~L~~n~i~~LP~~i~~L~-~L~~L~L~~~~l~~lP~~i~~L---r~L~l~~~ 747 (1007)
..|+++.+.+. ..+..+..+..+..|++.+|.++.+|..++.+. +|+.|++++|.+..+|..+..+ +.|++.
T Consensus 96 ~~l~~~~~~~~--~~~~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~-- 171 (394)
T COG4886 96 PSLDLNLNRLR--SNISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLS-- 171 (394)
T ss_pred ceeeccccccc--cCchhhhcccceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccC--
Confidence 36788888875 445566777889999999999999998888885 9999999999888876433322 444444
Q ss_pred ccccccccccccccCcCCCccccceeeCCCcccChHhhhcCCCCCeEEeeecCCCchhhHHHHHHHhhcCCCCCeEEEee
Q 001843 748 FLATNVFRHPQFVKWETSLQTLWGLCIKADEVQSLDYFRRLTSLRKLGLKCSSTTSTSLKKEIIGAVLQLSELHSLKLIC 827 (1007)
Q Consensus 748 ~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~l~~~~~~~l~~l~~L~~L~L~~ 827 (1007)
.|. ...+|. ..+.+++|+.|.++++. ...++ ..+..+..|++|.+.+
T Consensus 172 -~N~-l~~l~~-------------------------~~~~~~~L~~L~ls~N~--i~~l~----~~~~~~~~L~~l~~~~ 218 (394)
T COG4886 172 -FND-LSDLPK-------------------------LLSNLSNLNNLDLSGNK--ISDLP----PEIELLSALEELDLSN 218 (394)
T ss_pred -Cch-hhhhhh-------------------------hhhhhhhhhheeccCCc--cccCc----hhhhhhhhhhhhhhcC
Confidence 322 112222 22256677777777665 44444 4444455677777777
Q ss_pred cCCCCCCcccccCCCCCcEEEecccC-CCCCcCccCCCCCCceEEEEEeeecCCCCcCccccCCCCcEEEeecCCcC
Q 001843 828 ETPSYLPLLEMAEHYKLQKLYLSGHL-PPNSVIGDRSFPPNVVTLTLSQLRLEYDPMPILGRLRQLKILRLFGGSYT 903 (1007)
Q Consensus 828 ~~~~~~~~~~l~~~~~L~~L~L~g~~-~~lp~~~i~~~l~~L~~L~L~~~~l~~~~~~~l~~Lp~L~~L~L~~~~~~ 903 (1007)
+.... .+..+..+.++..|.+.++. ..++. .+.. +++|+.|++++|.+... +.++.+.+|+.|+++++...
T Consensus 219 N~~~~-~~~~~~~~~~l~~l~l~~n~~~~~~~-~~~~-l~~l~~L~~s~n~i~~i--~~~~~~~~l~~L~~s~n~~~ 290 (394)
T COG4886 219 NSIIE-LLSSLSNLKNLSGLELSNNKLEDLPE-SIGN-LSNLETLDLSNNQISSI--SSLGSLTNLRELDLSGNSLS 290 (394)
T ss_pred Cccee-cchhhhhcccccccccCCceeeeccc-hhcc-ccccceecccccccccc--ccccccCccCEEeccCcccc
Confidence 63221 45556666677777766665 44466 7777 88899999999987533 33888889999999866554
No 57
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.30 E-value=9.8e-06 Score=91.66 Aligned_cols=100 Identities=13% Similarity=0.072 Sum_probs=62.4
Q ss_pred CCcEEEEEeCcCccCchhhhhhc-cccCCCCCCcEEEEEcCCCcccccccCCcceeeecCCCCHHHHHHHHHhhhccccc
Q 001843 356 DSTFLIVMENAEHQKSQVWDSFL-GKLCSFTQCGKIIITTSSTEDFVEPLGAAFSTLHVPGLGKNESWELFLKKARIAED 434 (1007)
Q Consensus 356 ~kr~LlVlDdv~~~~~~~~~~l~-~l~~~~~~gs~IliTTR~~~~va~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~ 434 (1007)
..+-+||+||+..-.......+. .+-.. ...+++|+||.....+..........+++.+++.++....+.+.+.....
T Consensus 124 ~~~~vlilDe~~~l~~~~~~~L~~~le~~-~~~~~~Il~~~~~~~~~~~L~sr~~~v~~~~~~~~~~~~~l~~~~~~~~~ 202 (337)
T PRK12402 124 ADYKTILLDNAEALREDAQQALRRIMEQY-SRTCRFIIATRQPSKLIPPIRSRCLPLFFRAPTDDELVDVLESIAEAEGV 202 (337)
T ss_pred CCCcEEEEeCcccCCHHHHHHHHHHHHhc-cCCCeEEEEeCChhhCchhhcCCceEEEecCCCHHHHHHHHHHHHHHcCC
Confidence 34458999999744444445555 33222 44567888775543244433444478899999999998888886543322
Q ss_pred cccCCChHHHHHHHHHHHHcCCCchHHH
Q 001843 435 VLQSRSSELIKLKKQILNICDGLPLRVV 462 (1007)
Q Consensus 435 ~~~~~~~~~~~~~~~I~~~c~GlPLai~ 462 (1007)
. -..+....+++.++|.+-.+.
T Consensus 203 ---~---~~~~al~~l~~~~~gdlr~l~ 224 (337)
T PRK12402 203 ---D---YDDDGLELIAYYAGGDLRKAI 224 (337)
T ss_pred ---C---CCHHHHHHHHHHcCCCHHHHH
Confidence 1 124567788888888654443
No 58
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.28 E-value=1.6e-05 Score=90.34 Aligned_cols=98 Identities=9% Similarity=0.023 Sum_probs=65.6
Q ss_pred CCcEEEEEeCcCccCchhhhhhc-cccCCCCCCcEEEEEcCCCcccccccCCcceeeecCCCCHHHHHHHHHhhhccccc
Q 001843 356 DSTFLIVMENAEHQKSQVWDSFL-GKLCSFTQCGKIIITTSSTEDFVEPLGAAFSTLHVPGLGKNESWELFLKKARIAED 434 (1007)
Q Consensus 356 ~kr~LlVlDdv~~~~~~~~~~l~-~l~~~~~~gs~IliTTR~~~~va~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~ 434 (1007)
+++-++|+|+++.-+...++.+. .+-.. ....++|++|.+...+.....+.+..+++.+++.++..+.+...+.....
T Consensus 118 ~~~kviIIDEa~~l~~~a~naLLk~lEe~-~~~~~fIl~t~~~~~l~~tI~SRc~~~~~~~l~~~el~~~L~~~~~~~g~ 196 (363)
T PRK14961 118 SRFKVYLIDEVHMLSRHSFNALLKTLEEP-PQHIKFILATTDVEKIPKTILSRCLQFKLKIISEEKIFNFLKYILIKESI 196 (363)
T ss_pred CCceEEEEEChhhcCHHHHHHHHHHHhcC-CCCeEEEEEcCChHhhhHHHHhhceEEeCCCCCHHHHHHHHHHHHHHcCC
Confidence 45569999999865666677776 44433 45667777665544355444444489999999999999888776543221
Q ss_pred cccCCChHHHHHHHHHHHHcCCCchH
Q 001843 435 VLQSRSSELIKLKKQILNICDGLPLR 460 (1007)
Q Consensus 435 ~~~~~~~~~~~~~~~I~~~c~GlPLa 460 (1007)
.-.++.+..|++.++|.|-.
T Consensus 197 ------~i~~~al~~ia~~s~G~~R~ 216 (363)
T PRK14961 197 ------DTDEYALKLIAYHAHGSMRD 216 (363)
T ss_pred ------CCCHHHHHHHHHHcCCCHHH
Confidence 11235677889999997753
No 59
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.27 E-value=1.3e-05 Score=96.99 Aligned_cols=103 Identities=7% Similarity=0.027 Sum_probs=69.9
Q ss_pred CCCcEEEEEeCcCccCchhhhhhc-cccCCCCCCcEEEEEcCCCcccccccCCcceeeecCCCCHHHHHHHHHhhhcccc
Q 001843 355 DDSTFLIVMENAEHQKSQVWDSFL-GKLCSFTQCGKIIITTSSTEDFVEPLGAAFSTLHVPGLGKNESWELFLKKARIAE 433 (1007)
Q Consensus 355 ~~kr~LlVlDdv~~~~~~~~~~l~-~l~~~~~~gs~IliTTR~~~~va~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~ 433 (1007)
.+++-++|||+++.-+...++.++ .+-.. ....++|++|.+...+.....+.+..|++++|+.++..+.+.+.+....
T Consensus 117 ~gk~KViIIDEAh~LT~eAqNALLKtLEEP-P~~vrFILaTTe~~kLl~TIlSRCq~f~fkpLs~eEI~~~L~~il~~Eg 195 (944)
T PRK14949 117 RGRFKVYLIDEVHMLSRSSFNALLKTLEEP-PEHVKFLLATTDPQKLPVTVLSRCLQFNLKSLTQDEIGTQLNHILTQEQ 195 (944)
T ss_pred cCCcEEEEEechHhcCHHHHHHHHHHHhcc-CCCeEEEEECCCchhchHHHHHhheEEeCCCCCHHHHHHHHHHHHHHcC
Confidence 356779999999877777778777 33332 4456666665554436555455558999999999999998887654321
Q ss_pred ccccCCChHHHHHHHHHHHHcCCCch-HHHHH
Q 001843 434 DVLQSRSSELIKLKKQILNICDGLPL-RVVLL 464 (1007)
Q Consensus 434 ~~~~~~~~~~~~~~~~I~~~c~GlPL-ai~~~ 464 (1007)
. ....+.+..|++.++|.|- |+.++
T Consensus 196 I------~~edeAL~lIA~~S~Gd~R~ALnLL 221 (944)
T PRK14949 196 L------PFEAEALTLLAKAANGSMRDALSLT 221 (944)
T ss_pred C------CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 1 1224567889999999884 44443
No 60
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.26 E-value=3e-06 Score=99.30 Aligned_cols=178 Identities=15% Similarity=0.136 Sum_probs=101.5
Q ss_pred EEEEEEcCCCChHHHHHHHHHhhhhcccCCCceEEEEecCC-----CCCCHHHHHHHHHHHHhhhhhhhccccCHHHHHH
Q 001843 274 QVIALIGKAGSGKTTLARIVYNRVYVKRHFTKRAWVHIPIM-----SMVEDRDVLADILKQIDESLLKVEATLSAEELMW 348 (1007)
Q Consensus 274 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~-----~~~~~~~~l~~il~~l~~~~~~~~~~~~~~~l~~ 348 (1007)
..+.++|++|+||||+|+.+++...-.+.+...+|.|.++. ...+.. .+... ......+..++..
T Consensus 37 ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~i~~~~h~dv~--------el~~~--~~~~vd~iR~l~~ 106 (504)
T PRK14963 37 HAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLAVRRGAHPDVL--------EIDAA--SNNSVEDVRDLRE 106 (504)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHHHhcCCCCceE--------Eeccc--ccCCHHHHHHHHH
Confidence 56799999999999999999984322223333344432210 000000 00000 0000111112222
Q ss_pred HHHH-HcCCCcEEEEEeCcCccCchhhhhhc-cccCCCCCCcEEEEEcCCCcccccccCCcceeeecCCCCHHHHHHHHH
Q 001843 349 RITQ-ALDDSTFLIVMENAEHQKSQVWDSFL-GKLCSFTQCGKIIITTSSTEDFVEPLGAAFSTLHVPGLGKNESWELFL 426 (1007)
Q Consensus 349 ~l~~-~L~~kr~LlVlDdv~~~~~~~~~~l~-~l~~~~~~gs~IliTTR~~~~va~~~~~~~~~~~l~~L~~~ea~~Lf~ 426 (1007)
.+.. -..+++-++|+|+++..+...++.+. .+-.. ...+.+|++|.....+.......+..+++.+++.++..+.+.
T Consensus 107 ~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep-~~~t~~Il~t~~~~kl~~~I~SRc~~~~f~~ls~~el~~~L~ 185 (504)
T PRK14963 107 KVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEP-PEHVIFILATTEPEKMPPTILSRTQHFRFRRLTEEEIAGKLR 185 (504)
T ss_pred HHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhC-CCCEEEEEEcCChhhCChHHhcceEEEEecCCCHHHHHHHHH
Confidence 2211 12356669999999866666777777 55443 445555555544332655555555899999999999999998
Q ss_pred hhhccccccccCCChHHHHHHHHHHHHcCCCch-HHHHHHHHh
Q 001843 427 KKARIAEDVLQSRSSELIKLKKQILNICDGLPL-RVVLLAGLL 468 (1007)
Q Consensus 427 ~~a~~~~~~~~~~~~~~~~~~~~I~~~c~GlPL-ai~~~g~~L 468 (1007)
+.+...+. ....+.+..|++.++|.+- |+..+-.++
T Consensus 186 ~i~~~egi------~i~~~Al~~ia~~s~GdlR~aln~Lekl~ 222 (504)
T PRK14963 186 RLLEAEGR------EAEPEALQLVARLADGAMRDAESLLERLL 222 (504)
T ss_pred HHHHHcCC------CCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 87654332 1124567889999999885 444443433
No 61
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.23 E-value=1.5e-05 Score=93.57 Aligned_cols=99 Identities=8% Similarity=0.005 Sum_probs=66.3
Q ss_pred CCcEEEEEeCcCccCchhhhhhc-cccCCCCCCcEEEEEcCCCcccccccCCcceeeecCCCCHHHHHHHHHhhhccccc
Q 001843 356 DSTFLIVMENAEHQKSQVWDSFL-GKLCSFTQCGKIIITTSSTEDFVEPLGAAFSTLHVPGLGKNESWELFLKKARIAED 434 (1007)
Q Consensus 356 ~kr~LlVlDdv~~~~~~~~~~l~-~l~~~~~~gs~IliTTR~~~~va~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~ 434 (1007)
+++-++|+|+++.-+...++.+. .+-.. ..+.++|++|.+...+.....+.+..+++++++.++..+.+.+.+.....
T Consensus 117 gk~KV~IIDEVh~LS~~A~NALLKtLEEP-P~~v~FILaTtd~~kIp~TIlSRCq~feFkpLs~eEI~k~L~~Il~kEgI 195 (702)
T PRK14960 117 GRFKVYLIDEVHMLSTHSFNALLKTLEEP-PEHVKFLFATTDPQKLPITVISRCLQFTLRPLAVDEITKHLGAILEKEQI 195 (702)
T ss_pred CCcEEEEEechHhcCHHHHHHHHHHHhcC-CCCcEEEEEECChHhhhHHHHHhhheeeccCCCHHHHHHHHHHHHHHcCC
Confidence 55669999999866666777777 44333 44567777776544244333344489999999999999888876654322
Q ss_pred cccCCChHHHHHHHHHHHHcCCCchHH
Q 001843 435 VLQSRSSELIKLKKQILNICDGLPLRV 461 (1007)
Q Consensus 435 ~~~~~~~~~~~~~~~I~~~c~GlPLai 461 (1007)
.-..+....|++.++|-+-.+
T Consensus 196 ------~id~eAL~~IA~~S~GdLRdA 216 (702)
T PRK14960 196 ------AADQDAIWQIAESAQGSLRDA 216 (702)
T ss_pred ------CCCHHHHHHHHHHcCCCHHHH
Confidence 122456678889999877433
No 62
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.21 E-value=1.2e-06 Score=71.68 Aligned_cols=59 Identities=29% Similarity=0.330 Sum_probs=48.5
Q ss_pred CcccEEEecCCCCCCcCCC-ccccCCCcCcEEecccCCCcccCc-ccccCCCCCEEeecCCcc
Q 001843 669 GMLKVLDLEGVYKPMLTNN-NALGRLPFLEYLGLRSTFIDSLPD-STPILFCLATLDVSHTKV 729 (1007)
Q Consensus 669 ~~Lr~L~Ls~~~l~~~~lp-~~i~~L~~Lr~L~L~~n~i~~LP~-~i~~L~~L~~L~L~~~~l 729 (1007)
++|++|++++|.+. .+| ..|.++++|++|++++|.++.+|. .+.++++|++|++++|.|
T Consensus 1 p~L~~L~l~~n~l~--~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLT--EIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTES--EECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCC--ccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 46888899988888 776 467888999999999988888874 678899999999988864
No 63
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.21 E-value=3.4e-07 Score=94.46 Aligned_cols=111 Identities=23% Similarity=0.215 Sum_probs=82.3
Q ss_pred hHhhhcCCCCCeEEeeecCCCchhhHHHHHHHhhcCCCCCeEEEeecCCCCCCcccccCCCCCcEEEecccC-CCCCcCc
Q 001843 782 LDYFRRLTSLRKLGLKCSSTTSTSLKKEIIGAVLQLSELHSLKLICETPSYLPLLEMAEHYKLQKLYLSGHL-PPNSVIG 860 (1007)
Q Consensus 782 ~~~l~~L~~L~~L~l~~~~~~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~L~g~~-~~lp~~~ 860 (1007)
-+++.-++.++.|+++.+. ...+ .++..+++|+.|+|++|.... .-.+-..+-+++.|.|.+|. ..+. .
T Consensus 300 DESvKL~Pkir~L~lS~N~--i~~v-----~nLa~L~~L~~LDLS~N~Ls~-~~Gwh~KLGNIKtL~La~N~iE~LS--G 369 (490)
T KOG1259|consen 300 DESVKLAPKLRRLILSQNR--IRTV-----QNLAELPQLQLLDLSGNLLAE-CVGWHLKLGNIKTLKLAQNKIETLS--G 369 (490)
T ss_pred hhhhhhccceeEEeccccc--eeee-----hhhhhcccceEeecccchhHh-hhhhHhhhcCEeeeehhhhhHhhhh--h
Confidence 3445566889999999876 3333 457788999999999875543 22233346789999999987 6555 4
Q ss_pred cCCCCCCceEEEEEeeecCC-CCcCccccCCCCcEEEeecCCcC
Q 001843 861 DRSFPPNVVTLTLSQLRLEY-DPMPILGRLRQLKILRLFGGSYT 903 (1007)
Q Consensus 861 i~~~l~~L~~L~L~~~~l~~-~~~~~l~~Lp~L~~L~L~~~~~~ 903 (1007)
+.. +-+|..|++++|++.. +....+|+||+|+.|.|.+|...
T Consensus 370 L~K-LYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~ 412 (490)
T KOG1259|consen 370 LRK-LYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLA 412 (490)
T ss_pred hHh-hhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcc
Confidence 666 8899999999998754 34567899999999999977653
No 64
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.21 E-value=1.3e-05 Score=93.80 Aligned_cols=103 Identities=6% Similarity=0.022 Sum_probs=69.4
Q ss_pred CCCcEEEEEeCcCccCchhhhhhc-cccCCCCCCcEEEEEcCCCcccccccCCcceeeecCCCCHHHHHHHHHhhhcccc
Q 001843 355 DDSTFLIVMENAEHQKSQVWDSFL-GKLCSFTQCGKIIITTSSTEDFVEPLGAAFSTLHVPGLGKNESWELFLKKARIAE 433 (1007)
Q Consensus 355 ~~kr~LlVlDdv~~~~~~~~~~l~-~l~~~~~~gs~IliTTR~~~~va~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~ 433 (1007)
.++.-++|||+++.-+...++.+. .+-.- ....++|++|.+..++.....+.+..+.++.++.++..+.+.+.+....
T Consensus 122 ~gr~KViIIDEah~Ls~~AaNALLKTLEEP-P~~v~FILaTtep~kLlpTIrSRCq~f~f~~ls~eei~~~L~~Il~~Eg 200 (700)
T PRK12323 122 AGRFKVYMIDEVHMLTNHAFNAMLKTLEEP-PEHVKFILATTDPQKIPVTVLSRCLQFNLKQMPPGHIVSHLDAILGEEG 200 (700)
T ss_pred cCCceEEEEEChHhcCHHHHHHHHHhhccC-CCCceEEEEeCChHhhhhHHHHHHHhcccCCCChHHHHHHHHHHHHHcC
Confidence 355669999999877777777777 44332 3455655554444437766666668999999999999998887664322
Q ss_pred ccccCCChHHHHHHHHHHHHcCCCchHHHHH
Q 001843 434 DVLQSRSSELIKLKKQILNICDGLPLRVVLL 464 (1007)
Q Consensus 434 ~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~ 464 (1007)
. ....+....|++.++|.|.-...+
T Consensus 201 i------~~d~eAL~~IA~~A~Gs~RdALsL 225 (700)
T PRK12323 201 I------AHEVNALRLLAQAAQGSMRDALSL 225 (700)
T ss_pred C------CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 1 112345678899999988644433
No 65
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.20 E-value=2.1e-05 Score=80.19 Aligned_cols=156 Identities=21% Similarity=0.205 Sum_probs=85.5
Q ss_pred EEEEEEcCCCChHHHHHHHHHhhhhcccCCCceEEEEecCCCCCCHHHHHHHHHHHHhhhhhhhccccCHHHHHHHHHHH
Q 001843 274 QVIALIGKAGSGKTTLARIVYNRVYVKRHFTKRAWVHIPIMSMVEDRDVLADILKQIDESLLKVEATLSAEELMWRITQA 353 (1007)
Q Consensus 274 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~l~~il~~l~~~~~~~~~~~~~~~l~~~l~~~ 353 (1007)
.-+-+||++|+||||||.-+++ .....|. +++.. . . ....++...+.+
T Consensus 51 ~h~lf~GPPG~GKTTLA~IIA~--e~~~~~~---~~sg~--~-i-----------------------~k~~dl~~il~~- 98 (233)
T PF05496_consen 51 DHMLFYGPPGLGKTTLARIIAN--ELGVNFK---ITSGP--A-I-----------------------EKAGDLAAILTN- 98 (233)
T ss_dssp -EEEEESSTTSSHHHHHHHHHH--HCT--EE---EEECC--C--------------------------SCHHHHHHHHT-
T ss_pred ceEEEECCCccchhHHHHHHHh--ccCCCeE---eccch--h-h-----------------------hhHHHHHHHHHh-
Confidence 6788999999999999999999 5555552 33322 0 0 011112222211
Q ss_pred cCCCcEEEEEeCcCccCchhhhhhc-cc-------cCCCCC-----------CcEEEEEcCCCcccccccCCcc-eeeec
Q 001843 354 LDDSTFLIVMENAEHQKSQVWDSFL-GK-------LCSFTQ-----------CGKIIITTSSTEDFVEPLGAAF-STLHV 413 (1007)
Q Consensus 354 L~~kr~LlVlDdv~~~~~~~~~~l~-~l-------~~~~~~-----------gs~IliTTR~~~~va~~~~~~~-~~~~l 413 (1007)
+ .++-+|++|.+..-+..+-+.+. ++ .-+.+. -+-|=.|||... +..-..... -..++
T Consensus 99 l-~~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTligATTr~g~-ls~pLrdRFgi~~~l 176 (233)
T PF05496_consen 99 L-KEGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTLIGATTRAGL-LSSPLRDRFGIVLRL 176 (233)
T ss_dssp ---TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EEEEEESSGCC-TSHCCCTTSSEEEE-
T ss_pred c-CCCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCCceEeeeeccccc-cchhHHhhcceecch
Confidence 2 24557777888643333322222 11 111011 233455888876 665555553 44589
Q ss_pred CCCCHHHHHHHHHhhhccccccccCCChHHHHHHHHHHHHcCCCchHHHHHHHHhc
Q 001843 414 PGLGKNESWELFLKKARIAEDVLQSRSSELIKLKKQILNICDGLPLRVVLLAGLLS 469 (1007)
Q Consensus 414 ~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~g~~L~ 469 (1007)
+..+.+|-.++..+.+..-.. +-.++.+.+|+++|.|-|=-..-+-...+
T Consensus 177 ~~Y~~~el~~Iv~r~a~~l~i------~i~~~~~~~Ia~rsrGtPRiAnrll~rvr 226 (233)
T PF05496_consen 177 EFYSEEELAKIVKRSARILNI------EIDEDAAEEIARRSRGTPRIANRLLRRVR 226 (233)
T ss_dssp ---THHHHHHHHHHCCHCTT-------EE-HHHHHHHHHCTTTSHHHHHHHHHHHC
T ss_pred hcCCHHHHHHHHHHHHHHhCC------CcCHHHHHHHHHhcCCChHHHHHHHHHHH
Confidence 999999999999887754332 34468899999999999965554444433
No 66
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.19 E-value=3e-05 Score=79.63 Aligned_cols=91 Identities=16% Similarity=0.238 Sum_probs=64.8
Q ss_pred CCcEEEEEeCcCccCchhhhhhc-cccCCCCCCcEEEEEcCCCcccccccCCcceeeecCCCCHHHHHHHHHhhhccccc
Q 001843 356 DSTFLIVMENAEHQKSQVWDSFL-GKLCSFTQCGKIIITTSSTEDFVEPLGAAFSTLHVPGLGKNESWELFLKKARIAED 434 (1007)
Q Consensus 356 ~kr~LlVlDdv~~~~~~~~~~l~-~l~~~~~~gs~IliTTR~~~~va~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~ 434 (1007)
+.+-++|+|+++.-+.+.++.+. .+-.. ...+.+|++|++...+..........+++.+++.++..+.+.+. + .
T Consensus 95 ~~~kviiide~~~l~~~~~~~Ll~~le~~-~~~~~~il~~~~~~~l~~~i~sr~~~~~~~~~~~~~~~~~l~~~--g--i 169 (188)
T TIGR00678 95 SGRRVVIIEDAERMNEAAANALLKTLEEP-PPNTLFILITPSPEKLLPTIRSRCQVLPFPPLSEEALLQWLIRQ--G--I 169 (188)
T ss_pred CCeEEEEEechhhhCHHHHHHHHHHhcCC-CCCeEEEEEECChHhChHHHHhhcEEeeCCCCCHHHHHHHHHHc--C--C
Confidence 55668999999866666677777 44433 45566777776544355544444589999999999998888776 1 1
Q ss_pred cccCCChHHHHHHHHHHHHcCCCch
Q 001843 435 VLQSRSSELIKLKKQILNICDGLPL 459 (1007)
Q Consensus 435 ~~~~~~~~~~~~~~~I~~~c~GlPL 459 (1007)
+ .+.+..|++.++|.|.
T Consensus 170 -----~---~~~~~~i~~~~~g~~r 186 (188)
T TIGR00678 170 -----S---EEAAELLLALAGGSPG 186 (188)
T ss_pred -----C---HHHHHHHHHHcCCCcc
Confidence 1 3568899999999885
No 67
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.19 E-value=2.1e-05 Score=92.34 Aligned_cols=162 Identities=15% Similarity=0.113 Sum_probs=94.7
Q ss_pred EEEEEEcCCCChHHHHHHHHHhhhhc-------------------ccCCCceEEEEecCCCCCCHHHHHHHHHHHHhhhh
Q 001843 274 QVIALIGKAGSGKTTLARIVYNRVYV-------------------KRHFTKRAWVHIPIMSMVEDRDVLADILKQIDESL 334 (1007)
Q Consensus 274 ~vi~I~G~gGiGKTtLa~~v~~~~~~-------------------~~~F~~~~wv~~s~~~~~~~~~~l~~il~~l~~~~ 334 (1007)
..+.++|+.|+||||+|+.+++.-.- ...|...+++... ...... -.+++
T Consensus 39 ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dlieidaa--s~~gvd-~ir~i-------- 107 (546)
T PRK14957 39 HAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDLIEIDAA--SRTGVE-ETKEI-------- 107 (546)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCceEEeecc--cccCHH-HHHHH--------
Confidence 56789999999999999999873110 0112233333322 111111 11222
Q ss_pred hhhccccCHHHHHHHHHH-HcCCCcEEEEEeCcCccCchhhhhhc-cccCCCCCCcEEEE-EcCCCcccccccCCcceee
Q 001843 335 LKVEATLSAEELMWRITQ-ALDDSTFLIVMENAEHQKSQVWDSFL-GKLCSFTQCGKIII-TTSSTEDFVEPLGAAFSTL 411 (1007)
Q Consensus 335 ~~~~~~~~~~~l~~~l~~-~L~~kr~LlVlDdv~~~~~~~~~~l~-~l~~~~~~gs~Ili-TTR~~~~va~~~~~~~~~~ 411 (1007)
.+.+.. -..+++-++|+|+++.-+...++.+. .+-+. ...+.+|+ ||.... +.....+.+..+
T Consensus 108 ------------i~~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEep-p~~v~fIL~Ttd~~k-il~tI~SRc~~~ 173 (546)
T PRK14957 108 ------------LDNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEP-PEYVKFILATTDYHK-IPVTILSRCIQL 173 (546)
T ss_pred ------------HHHHHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhcC-CCCceEEEEECChhh-hhhhHHHheeeE
Confidence 222221 12356679999999866667777777 44333 44555554 554333 554445445899
Q ss_pred ecCCCCHHHHHHHHHhhhccccccccCCChHHHHHHHHHHHHcCCCc-hHHHHHHH
Q 001843 412 HVPGLGKNESWELFLKKARIAEDVLQSRSSELIKLKKQILNICDGLP-LRVVLLAG 466 (1007)
Q Consensus 412 ~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~~~~I~~~c~GlP-Lai~~~g~ 466 (1007)
++++++.++-.+.+.+.+...+. ...+.....|++.++|-+ -|+..+-.
T Consensus 174 ~f~~Ls~~eI~~~L~~il~~egi------~~e~~Al~~Ia~~s~GdlR~alnlLek 223 (546)
T PRK14957 174 HLKHISQADIKDQLKIILAKENI------NSDEQSLEYIAYHAKGSLRDALSLLDQ 223 (546)
T ss_pred EeCCCCHHHHHHHHHHHHHHcCC------CCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 99999999988777765433211 122455677888998855 45555543
No 68
>COG3899 Predicted ATPase [General function prediction only]
Probab=98.18 E-value=3.2e-05 Score=96.56 Aligned_cols=289 Identities=13% Similarity=0.091 Sum_probs=163.0
Q ss_pred EEEEEEcCCCChHHHHHHHHHhhhhcccCCCceEEEEecCC-CC---CCHHHHHHHHHHHHhhhhhhh------------
Q 001843 274 QVIALIGKAGSGKTTLARIVYNRVYVKRHFTKRAWVHIPIM-SM---VEDRDVLADILKQIDESLLKV------------ 337 (1007)
Q Consensus 274 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~-~~---~~~~~~l~~il~~l~~~~~~~------------ 337 (1007)
.++.+.|..|||||+|+++|.. .+.+.+...+--.+... .+ ....+.+++++.++.......
T Consensus 25 ~~~lv~G~sGIGKsalv~ev~~--~i~~~~~~~i~~~f~q~~~~ipl~~lvq~~r~l~~~ll~~~~~~~~~~~~~il~~~ 102 (849)
T COG3899 25 EVVLVAGESGIGKSALVNEVHK--PITQQRGYFIKGKFDQFERNIPLSPLVQAFRDLMGQLLSESDTRILSWRARLLAAL 102 (849)
T ss_pred EEEEEeecCCCcHHHHHHHHHH--HHhccceeeeHhhcccccCCCchHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHh
Confidence 7999999999999999999998 45444222111111100 11 133556677777663220000
Q ss_pred ------------------c--------cccCHHH-----HHHHHHHHc-CCCcEEEEEeCcCccCchhhhhhccccCC--
Q 001843 338 ------------------E--------ATLSAEE-----LMWRITQAL-DDSTFLIVMENAEHQKSQVWDSFLGKLCS-- 383 (1007)
Q Consensus 338 ------------------~--------~~~~~~~-----l~~~l~~~L-~~kr~LlVlDdv~~~~~~~~~~l~~l~~~-- 383 (1007)
+ .....+. ....+.... +.++.++|+||+.-.|....+-+.-+-..
T Consensus 103 g~~~~~~~~vip~L~~i~g~~~~~~el~~~~~~~r~n~~~~~~i~~~~~~~~plVi~leDlhWaD~~SL~lL~~lm~~~~ 182 (849)
T COG3899 103 GENGQVIIDVIPELELIIGKRPPALELSPTAAQNRFNLAFLRFIQVFTAEEHPLVIVLEDLHWADSASLKLLQLLMDRIA 182 (849)
T ss_pred cccchhHHhhhHHHHhhcCCCcchhhcccchhHHHHHHHHHHHHHHHHhccCCeEEEEecccccChhHHHHHHHHHHhcc
Confidence 0 0111111 122233333 35699999999953333333333311111
Q ss_pred --CCCCcEEEEEcCCCc--ccccccCCcceeeecCCCCHHHHHHHHHhhhccccccccCCChHHHHHHHHHHHHcCCCch
Q 001843 384 --FTQCGKIIITTSSTE--DFVEPLGAAFSTLHVPGLGKNESWELFLKKARIAEDVLQSRSSELIKLKKQILNICDGLPL 459 (1007)
Q Consensus 384 --~~~gs~IliTTR~~~--~va~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~~~~I~~~c~GlPL 459 (1007)
.-.-..|..+..... ............+.|.||+..+...+.......... ...+....|+++.+|+|+
T Consensus 183 ~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l~~~~~-------~~~p~~~~i~~kt~GnPf 255 (849)
T COG3899 183 IGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAATLGCTKL-------LPAPLLELIFEKTKGNPF 255 (849)
T ss_pred hhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHHhCCccc-------ccchHHHHHHHHhcCCCc
Confidence 001112333222222 012222233389999999999999999887754222 235678899999999999
Q ss_pred HHHHHHHHhcCCCC-----ChHHHHHHHHHcc-------cchhhhhhhcCCccCchhhhhhhccCCCCcccchhHHHHHH
Q 001843 460 RVVLLAGLLSTKQP-----SYEEWSKVIERAN-------GDNLVALCYQDLPAQVKPCILYMGLFPREYEIPVRRLIHLW 527 (1007)
Q Consensus 460 ai~~~g~~L~~~~~-----~~~~w~~~l~~l~-------i~~~l~~sy~~L~~~~k~cfl~la~fp~~~~i~~~~Li~~W 527 (1007)
-+.-+-..+..... ....|..=...+. +...+..-.+.||...++.+...|++-.. |+.+.|...|
T Consensus 256 Fi~e~lk~l~~~~~i~f~~~~~~w~~~~~~i~~~~~~~~vv~~l~~rl~kL~~~t~~Vl~~AA~iG~~--F~l~~La~l~ 333 (849)
T COG3899 256 FIEEFLKALYEEGLLVFNFDTGAWQCSIASLGILATTDAVVEFLAARLQKLPGTTREVLKAAACIGNR--FDLDTLAALA 333 (849)
T ss_pred cHHHHHHHHHhCCeeEecCCCcceeccHHhcCCchhhHHHHHHHHHHHhcCCHHHHHHHHHHHHhCcc--CCHHHHHHHH
Confidence 99998888876421 2444544334443 22347777899999999999999988655 4555555555
Q ss_pred HhcccCCCCCCccCCHHHHHHHHHHHHHhccceEEEeecCCCCcc-e--E-EcCHHHHHHHH
Q 001843 528 CAEGFAPPDLDLIASEEDLAEMYLEELVTRHMIQVIRWRLDGSPK-T--C-CMPGVLYDILR 585 (1007)
Q Consensus 528 iaeg~i~~~~~~~~~~e~~~~~~l~~Lv~rsll~~~~~~~~g~~~-~--~-~mHdlv~d~~~ 585 (1007)
-. .....+...++.|....++-..+....+... . | ..|+.+++.+-
T Consensus 334 ~~------------~~~~~a~~l~~al~e~lI~~~~~~yr~~~~~~~~~Y~F~H~~vqqaaY 383 (849)
T COG3899 334 ED------------SPALEAAALLDALQEGLILPLSETYRFGSNVDIATYKFLHDRVQQAAY 383 (849)
T ss_pred hh------------chHHHHHHHHHHhHhhceeccccccccccccchhhHHhhHHHHHHHHh
Confidence 21 3445566666666666555432222222111 1 1 46777777764
No 69
>PRK04195 replication factor C large subunit; Provisional
Probab=98.18 E-value=7.3e-05 Score=88.38 Aligned_cols=157 Identities=17% Similarity=0.143 Sum_probs=90.9
Q ss_pred EEEEEEcCCCChHHHHHHHHHhhhhcccCCCceEEEEecCCCCCCHHHHHHHHHHHHhhhhhhhccccCHHHHHHHHHHH
Q 001843 274 QVIALIGKAGSGKTTLARIVYNRVYVKRHFTKRAWVHIPIMSMVEDRDVLADILKQIDESLLKVEATLSAEELMWRITQA 353 (1007)
Q Consensus 274 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~l~~il~~l~~~~~~~~~~~~~~~l~~~l~~~ 353 (1007)
+.+.|+|++|+||||+|+.++++ + .|+. +-++++ .. .....+..++...... ...
T Consensus 40 ~~lLL~GppG~GKTtla~ala~e--l--~~~~-ielnas--d~-r~~~~i~~~i~~~~~~-----------------~sl 94 (482)
T PRK04195 40 KALLLYGPPGVGKTSLAHALAND--Y--GWEV-IELNAS--DQ-RTADVIERVAGEAATS-----------------GSL 94 (482)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH--c--CCCE-EEEccc--cc-ccHHHHHHHHHHhhcc-----------------Ccc
Confidence 78999999999999999999994 3 2332 333444 22 2222333333322211 001
Q ss_pred cCCCcEEEEEeCcCccCc----hhhhhhccccCCCCCCcEEEEEcCCCccccc-ccCCcceeeecCCCCHHHHHHHHHhh
Q 001843 354 LDDSTFLIVMENAEHQKS----QVWDSFLGKLCSFTQCGKIIITTSSTEDFVE-PLGAAFSTLHVPGLGKNESWELFLKK 428 (1007)
Q Consensus 354 L~~kr~LlVlDdv~~~~~----~~~~~l~~l~~~~~~gs~IliTTR~~~~va~-~~~~~~~~~~l~~L~~~ea~~Lf~~~ 428 (1007)
...++-+||+|+++.-.. ..+..+..+... . +..||+|+.+...... .....+..+++.+++.++....+.+.
T Consensus 95 ~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~~-~-~~~iIli~n~~~~~~~k~Lrsr~~~I~f~~~~~~~i~~~L~~i 172 (482)
T PRK04195 95 FGARRKLILLDEVDGIHGNEDRGGARAILELIKK-A-KQPIILTANDPYDPSLRELRNACLMIEFKRLSTRSIVPVLKRI 172 (482)
T ss_pred cCCCCeEEEEecCcccccccchhHHHHHHHHHHc-C-CCCEEEeccCccccchhhHhccceEEEecCCCHHHHHHHHHHH
Confidence 113677999999984322 334555522222 2 3346666644331322 23333378999999999999888877
Q ss_pred hccccccccCCChHHHHHHHHHHHHcCCCchHHHH
Q 001843 429 ARIAEDVLQSRSSELIKLKKQILNICDGLPLRVVL 463 (1007)
Q Consensus 429 a~~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~ 463 (1007)
+..... ..+ .+....|++.++|-.-.+..
T Consensus 173 ~~~egi---~i~---~eaL~~Ia~~s~GDlR~ain 201 (482)
T PRK04195 173 CRKEGI---ECD---DEALKEIAERSGGDLRSAIN 201 (482)
T ss_pred HHHcCC---CCC---HHHHHHHHHHcCCCHHHHHH
Confidence 654332 122 35678888999886655443
No 70
>PLN03025 replication factor C subunit; Provisional
Probab=98.17 E-value=1.7e-05 Score=88.64 Aligned_cols=159 Identities=14% Similarity=0.207 Sum_probs=90.2
Q ss_pred EEEEEEcCCCChHHHHHHHHHhhhhcccCCCc-eEEEEecCCCCCCHHHHHHHHHHHHhhhhhhhccccCHHHHHHHHHH
Q 001843 274 QVIALIGKAGSGKTTLARIVYNRVYVKRHFTK-RAWVHIPIMSMVEDRDVLADILKQIDESLLKVEATLSAEELMWRITQ 352 (1007)
Q Consensus 274 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~-~~wv~~s~~~~~~~~~~l~~il~~l~~~~~~~~~~~~~~~l~~~l~~ 352 (1007)
.-+-++|++|+||||+|+.+++.- ....|.. ++-+..+ .... .+.+++++..+... .. .
T Consensus 35 ~~lll~Gp~G~GKTtla~~la~~l-~~~~~~~~~~eln~s--d~~~-~~~vr~~i~~~~~~--~~--------------~ 94 (319)
T PLN03025 35 PNLILSGPPGTGKTTSILALAHEL-LGPNYKEAVLELNAS--DDRG-IDVVRNKIKMFAQK--KV--------------T 94 (319)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHH-hcccCccceeeeccc--cccc-HHHHHHHHHHHHhc--cc--------------c
Confidence 446799999999999999999831 1222321 1212222 1111 12233333222111 00 0
Q ss_pred HcCCCcEEEEEeCcCccCchhhhhhccccCCCCCCcEEEEEcCCCcccccccCCcceeeecCCCCHHHHHHHHHhhhccc
Q 001843 353 ALDDSTFLIVMENAEHQKSQVWDSFLGKLCSFTQCGKIIITTSSTEDFVEPLGAAFSTLHVPGLGKNESWELFLKKARIA 432 (1007)
Q Consensus 353 ~L~~kr~LlVlDdv~~~~~~~~~~l~~l~~~~~~gs~IliTTR~~~~va~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~ 432 (1007)
.-.++.-++|+|+++.-.....+.+..........+++++++.....+.....+.+..++++++++++....+...+...
T Consensus 95 ~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SRc~~i~f~~l~~~~l~~~L~~i~~~e 174 (319)
T PLN03025 95 LPPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLSDQEILGRLMKVVEAE 174 (319)
T ss_pred CCCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHHhhhcccCCCCCHHHHHHHHHHHHHHc
Confidence 00234669999999855555555555222222455677776655432444444444789999999999998888776543
Q ss_pred cccccCCChHHHHHHHHHHHHcCCCc
Q 001843 433 EDVLQSRSSELIKLKKQILNICDGLP 458 (1007)
Q Consensus 433 ~~~~~~~~~~~~~~~~~I~~~c~GlP 458 (1007)
.. ..+ .+....|++.++|-.
T Consensus 175 gi---~i~---~~~l~~i~~~~~gDl 194 (319)
T PLN03025 175 KV---PYV---PEGLEAIIFTADGDM 194 (319)
T ss_pred CC---CCC---HHHHHHHHHHcCCCH
Confidence 32 111 346778888888765
No 71
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.17 E-value=2.6e-05 Score=87.51 Aligned_cols=160 Identities=14% Similarity=0.178 Sum_probs=89.2
Q ss_pred EEEEEEcCCCChHHHHHHHHHhhhhcccCCCceEEEEecCCCCCCHHHHHHHHHHHHhhhhhhhccccCHHHHHHHHHHH
Q 001843 274 QVIALIGKAGSGKTTLARIVYNRVYVKRHFTKRAWVHIPIMSMVEDRDVLADILKQIDESLLKVEATLSAEELMWRITQA 353 (1007)
Q Consensus 274 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~l~~il~~l~~~~~~~~~~~~~~~l~~~l~~~ 353 (1007)
..+.++|.+|+||||+|+.+++.. ....+.. .++.+....... .....+.+.++... . ..
T Consensus 39 ~~~ll~G~~G~GKt~~~~~l~~~l-~~~~~~~-~~i~~~~~~~~~-~~~~~~~i~~~~~~-----~------------~~ 98 (319)
T PRK00440 39 PHLLFAGPPGTGKTTAALALAREL-YGEDWRE-NFLELNASDERG-IDVIRNKIKEFART-----A------------PV 98 (319)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH-cCCcccc-ceEEeccccccc-hHHHHHHHHHHHhc-----C------------CC
Confidence 457999999999999999999842 1122221 233332001111 11122222221111 0 00
Q ss_pred cCCCcEEEEEeCcCccCchhhhhhc-cccCCCCCCcEEEEEcCCCcccccccCCcceeeecCCCCHHHHHHHHHhhhccc
Q 001843 354 LDDSTFLIVMENAEHQKSQVWDSFL-GKLCSFTQCGKIIITTSSTEDFVEPLGAAFSTLHVPGLGKNESWELFLKKARIA 432 (1007)
Q Consensus 354 L~~kr~LlVlDdv~~~~~~~~~~l~-~l~~~~~~gs~IliTTR~~~~va~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~ 432 (1007)
....+-+||+|+++.-....+..+. .+... ...+++|+++.....+..........++++++++++....+.+.+...
T Consensus 99 ~~~~~~vviiDe~~~l~~~~~~~L~~~le~~-~~~~~lIl~~~~~~~l~~~l~sr~~~~~~~~l~~~ei~~~l~~~~~~~ 177 (319)
T PRK00440 99 GGAPFKIIFLDEADNLTSDAQQALRRTMEMY-SQNTRFILSCNYSSKIIDPIQSRCAVFRFSPLKKEAVAERLRYIAENE 177 (319)
T ss_pred CCCCceEEEEeCcccCCHHHHHHHHHHHhcC-CCCCeEEEEeCCccccchhHHHHhheeeeCCCCHHHHHHHHHHHHHHc
Confidence 0133568999998754444555555 33332 445677776654332433333333678999999999988888776543
Q ss_pred cccccCCChHHHHHHHHHHHHcCCCchH
Q 001843 433 EDVLQSRSSELIKLKKQILNICDGLPLR 460 (1007)
Q Consensus 433 ~~~~~~~~~~~~~~~~~I~~~c~GlPLa 460 (1007)
.. . -..+....+++.++|.+--
T Consensus 178 ~~---~---i~~~al~~l~~~~~gd~r~ 199 (319)
T PRK00440 178 GI---E---ITDDALEAIYYVSEGDMRK 199 (319)
T ss_pred CC---C---CCHHHHHHHHHHcCCCHHH
Confidence 22 1 1245677888899887754
No 72
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.16 E-value=1.5e-05 Score=77.70 Aligned_cols=106 Identities=17% Similarity=0.123 Sum_probs=57.5
Q ss_pred EEEEEEcCCCChHHHHHHHHHhhhhcccCCCceEEEEecCCCCCCHHHHHHHHHHHHhhhhhhhccccCHHHHHHHHHHH
Q 001843 274 QVIALIGKAGSGKTTLARIVYNRVYVKRHFTKRAWVHIPIMSMVEDRDVLADILKQIDESLLKVEATLSAEELMWRITQA 353 (1007)
Q Consensus 274 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~l~~il~~l~~~~~~~~~~~~~~~l~~~l~~~ 353 (1007)
+.+.|+|.+|+||||+|+++++. ....-..++++... ...........+... .........
T Consensus 20 ~~v~i~G~~G~GKT~l~~~i~~~--~~~~~~~v~~~~~~--~~~~~~~~~~~~~~~---------------~~~~~~~~~ 80 (151)
T cd00009 20 KNLLLYGPPGTGKTTLARAIANE--LFRPGAPFLYLNAS--DLLEGLVVAELFGHF---------------LVRLLFELA 80 (151)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH--hhcCCCCeEEEehh--hhhhhhHHHHHhhhh---------------hHhHHHHhh
Confidence 78899999999999999999994 32223446677655 322211111100000 001111222
Q ss_pred cCCCcEEEEEeCcCccCchhhhhhc-cccCCC-----CCCcEEEEEcCCCc
Q 001843 354 LDDSTFLIVMENAEHQKSQVWDSFL-GKLCSF-----TQCGKIIITTSSTE 398 (1007)
Q Consensus 354 L~~kr~LlVlDdv~~~~~~~~~~l~-~l~~~~-----~~gs~IliTTR~~~ 398 (1007)
...++.+||+||++.........+. .+.... ..+..||+||....
T Consensus 81 ~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 81 EKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred ccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 3456789999999832122222222 111110 25678888888654
No 73
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.15 E-value=4e-06 Score=85.74 Aligned_cols=23 Identities=43% Similarity=0.742 Sum_probs=18.1
Q ss_pred EEEEEEcCCCChHHHHHHHHHhh
Q 001843 274 QVIALIGKAGSGKTTLARIVYNR 296 (1007)
Q Consensus 274 ~vi~I~G~gGiGKTtLa~~v~~~ 296 (1007)
+++.|+|.+|+|||+|.++++..
T Consensus 25 ~~~ll~G~~G~GKT~ll~~~~~~ 47 (185)
T PF13191_consen 25 RNLLLTGESGSGKTSLLRALLDR 47 (185)
T ss_dssp --EEE-B-TTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 89999999999999999999984
No 74
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.15 E-value=9.8e-06 Score=98.61 Aligned_cols=153 Identities=18% Similarity=0.256 Sum_probs=83.5
Q ss_pred EEEEEEcCCCChHHHHHHHHHhhhhcccCCCceEEEEecCCCCCCHHHHHHHHHHHHhhhhhhhccccCHHHHHHHHHHH
Q 001843 274 QVIALIGKAGSGKTTLARIVYNRVYVKRHFTKRAWVHIPIMSMVEDRDVLADILKQIDESLLKVEATLSAEELMWRITQA 353 (1007)
Q Consensus 274 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~l~~il~~l~~~~~~~~~~~~~~~l~~~l~~~ 353 (1007)
..+.++|++|+||||+|+.+++ ....+| +.++ .......-.+++ .....+.
T Consensus 53 ~slLL~GPpGtGKTTLA~aIA~--~~~~~f-----~~ln--a~~~~i~dir~~--------------------i~~a~~~ 103 (725)
T PRK13341 53 GSLILYGPPGVGKTTLARIIAN--HTRAHF-----SSLN--AVLAGVKDLRAE--------------------VDRAKER 103 (725)
T ss_pred ceEEEECCCCCCHHHHHHHHHH--HhcCcc-----eeeh--hhhhhhHHHHHH--------------------HHHHHHH
Confidence 5678999999999999999998 454444 2222 100000001111 1111111
Q ss_pred c--CCCcEEEEEeCcCccCchhhhhhccccCCCCCCcEEEE--EcCCCc-ccccccCCcceeeecCCCCHHHHHHHHHhh
Q 001843 354 L--DDSTFLIVMENAEHQKSQVWDSFLGKLCSFTQCGKIII--TTSSTE-DFVEPLGAAFSTLHVPGLGKNESWELFLKK 428 (1007)
Q Consensus 354 L--~~kr~LlVlDdv~~~~~~~~~~l~~l~~~~~~gs~Ili--TTR~~~-~va~~~~~~~~~~~l~~L~~~ea~~Lf~~~ 428 (1007)
+ .+++.+|||||++.-+...++.+.... ..|+.++| ||.+.. .+.....+....+.+++|+.++...++.+.
T Consensus 104 l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~l---E~g~IiLI~aTTenp~~~l~~aL~SR~~v~~l~pLs~edi~~IL~~~ 180 (725)
T PRK13341 104 LERHGKRTILFIDEVHRFNKAQQDALLPWV---ENGTITLIGATTENPYFEVNKALVSRSRLFRLKSLSDEDLHQLLKRA 180 (725)
T ss_pred hhhcCCceEEEEeChhhCCHHHHHHHHHHh---cCceEEEEEecCCChHhhhhhHhhccccceecCCCCHHHHHHHHHHH
Confidence 1 246779999999854555566555322 33555665 344432 122222222378999999999999998876
Q ss_pred hccccccc-cCCChHHHHHHHHHHHHcCCCc
Q 001843 429 ARIAEDVL-QSRSSELIKLKKQILNICDGLP 458 (1007)
Q Consensus 429 a~~~~~~~-~~~~~~~~~~~~~I~~~c~GlP 458 (1007)
+....... .....-.++....|++.+.|..
T Consensus 181 l~~~~~~~g~~~v~I~deaL~~La~~s~GD~ 211 (725)
T PRK13341 181 LQDKERGYGDRKVDLEPEAEKHLVDVANGDA 211 (725)
T ss_pred HHHHHhhcCCcccCCCHHHHHHHHHhCCCCH
Confidence 54110000 0001112345677777777753
No 75
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.15 E-value=2.7e-05 Score=90.95 Aligned_cols=98 Identities=10% Similarity=0.076 Sum_probs=67.8
Q ss_pred CCCcEEEEEeCcCccCchhhhhhc-cccCCCCCCcEEEE-EcCCCcccccccCCcceeeecCCCCHHHHHHHHHhhhccc
Q 001843 355 DDSTFLIVMENAEHQKSQVWDSFL-GKLCSFTQCGKIII-TTSSTEDFVEPLGAAFSTLHVPGLGKNESWELFLKKARIA 432 (1007)
Q Consensus 355 ~~kr~LlVlDdv~~~~~~~~~~l~-~l~~~~~~gs~Ili-TTR~~~~va~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~ 432 (1007)
.+++-++|+|+++.-+...|+.+. .+... ...+.+|+ ||+... +.......+..+++++++.++..+.+.+.+...
T Consensus 126 ~~~~KVvIIDEa~~Ls~~a~naLLk~LEep-p~~~vfI~aTte~~k-I~~tI~SRc~~~ef~~ls~~el~~~L~~i~~~e 203 (507)
T PRK06645 126 QGKHKIFIIDEVHMLSKGAFNALLKTLEEP-PPHIIFIFATTEVQK-IPATIISRCQRYDLRRLSFEEIFKLLEYITKQE 203 (507)
T ss_pred cCCcEEEEEEChhhcCHHHHHHHHHHHhhc-CCCEEEEEEeCChHH-hhHHHHhcceEEEccCCCHHHHHHHHHHHHHHc
Confidence 456779999999966677788887 55444 45556554 555444 665555555789999999999999998887543
Q ss_pred cccccCCChHHHHHHHHHHHHcCCCchH
Q 001843 433 EDVLQSRSSELIKLKKQILNICDGLPLR 460 (1007)
Q Consensus 433 ~~~~~~~~~~~~~~~~~I~~~c~GlPLa 460 (1007)
.. .-..+....|++.++|.+--
T Consensus 204 gi------~ie~eAL~~Ia~~s~GslR~ 225 (507)
T PRK06645 204 NL------KTDIEALRIIAYKSEGSARD 225 (507)
T ss_pred CC------CCCHHHHHHHHHHcCCCHHH
Confidence 32 11234567788899887633
No 76
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.15 E-value=3.3e-05 Score=89.88 Aligned_cols=120 Identities=8% Similarity=0.051 Sum_probs=72.1
Q ss_pred CCcEEEEEeCcCccCchhhhhhc-cccCCCCCCcEEEEEcCCCcccccccCCcceeeecCCCCHHHHHHHHHhhhccccc
Q 001843 356 DSTFLIVMENAEHQKSQVWDSFL-GKLCSFTQCGKIIITTSSTEDFVEPLGAAFSTLHVPGLGKNESWELFLKKARIAED 434 (1007)
Q Consensus 356 ~kr~LlVlDdv~~~~~~~~~~l~-~l~~~~~~gs~IliTTR~~~~va~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~ 434 (1007)
+++-++|+|+++.-.....+.+. .+-+. .....+|++|.+...+.......+..+++.+++.++....+.+.+.....
T Consensus 116 ~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p-~~~vv~Ilattn~~kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~egi 194 (472)
T PRK14962 116 GKYKVYIIDEVHMLTKEAFNALLKTLEEP-PSHVVFVLATTNLEKVPPTIISRCQVIEFRNISDELIIKRLQEVAEAEGI 194 (472)
T ss_pred CCeEEEEEEChHHhHHHHHHHHHHHHHhC-CCcEEEEEEeCChHhhhHHHhcCcEEEEECCccHHHHHHHHHHHHHHcCC
Confidence 46679999999854455556666 44332 33344444444433265555555589999999999988888877643221
Q ss_pred cccCCChHHHHHHHHHHHHcC-CCchHHHHHHHHhcCC--CCChHHHHHHH
Q 001843 435 VLQSRSSELIKLKKQILNICD-GLPLRVVLLAGLLSTK--QPSYEEWSKVI 482 (1007)
Q Consensus 435 ~~~~~~~~~~~~~~~I~~~c~-GlPLai~~~g~~L~~~--~~~~~~w~~~l 482 (1007)
.-..+....|++.++ +++.|+..+-.+.... .-+.+....++
T Consensus 195 ------~i~~eal~~Ia~~s~GdlR~aln~Le~l~~~~~~~It~e~V~~~l 239 (472)
T PRK14962 195 ------EIDREALSFIAKRASGGLRDALTMLEQVWKFSEGKITLETVHEAL 239 (472)
T ss_pred ------CCCHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence 112355677888775 5577777776544321 12345554444
No 77
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.14 E-value=3.7e-06 Score=89.21 Aligned_cols=93 Identities=16% Similarity=0.113 Sum_probs=61.1
Q ss_pred EEEEEEcCCCChHHHHHHHHHhhhhcccCCCceEEEEecCCCCCCHHHHHHHHHHHHhhhhh---hhccccCHHHHHHHH
Q 001843 274 QVIALIGKAGSGKTTLARIVYNRVYVKRHFTKRAWVHIPIMSMVEDRDVLADILKQIDESLL---KVEATLSAEELMWRI 350 (1007)
Q Consensus 274 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~l~~il~~l~~~~~---~~~~~~~~~~l~~~l 350 (1007)
..++|+|.+|+|||||++.+|++.... +|+.++|+++...+..+..++++.+...+-.... ......-........
T Consensus 17 qr~~I~G~~G~GKTTLlr~I~n~l~~~-~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~~~~a 95 (249)
T cd01128 17 QRGLIVAPPKAGKTTLLQSIANAITKN-HPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMVLEKA 95 (249)
T ss_pred CEEEEECCCCCCHHHHHHHHHhccccc-cCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHHHHHH
Confidence 789999999999999999999964443 8999999997733338999999998333222100 000000111112222
Q ss_pred HHH-cCCCcEEEEEeCcC
Q 001843 351 TQA-LDDSTFLIVMENAE 367 (1007)
Q Consensus 351 ~~~-L~~kr~LlVlDdv~ 367 (1007)
..+ -.+++.++++|++.
T Consensus 96 ~~~~~~G~~vll~iDei~ 113 (249)
T cd01128 96 KRLVEHGKDVVILLDSIT 113 (249)
T ss_pred HHHHHCCCCEEEEEECHH
Confidence 222 25899999999996
No 78
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.13 E-value=4.1e-05 Score=86.94 Aligned_cols=97 Identities=11% Similarity=0.141 Sum_probs=66.8
Q ss_pred CCcEEEEEeCcCccCchhhhhhc-cccCCCCCCcEEEEEcCCCcccccccCCcceeeecCCCCHHHHHHHHHhhhccccc
Q 001843 356 DSTFLIVMENAEHQKSQVWDSFL-GKLCSFTQCGKIIITTSSTEDFVEPLGAAFSTLHVPGLGKNESWELFLKKARIAED 434 (1007)
Q Consensus 356 ~kr~LlVlDdv~~~~~~~~~~l~-~l~~~~~~gs~IliTTR~~~~va~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~ 434 (1007)
+++-++|+|+++.-+....+.+. .+-.. ..+..+|++|.+...+.....+.+..+.+++++.++..+.+.+....
T Consensus 116 ~~~kViiIDead~m~~~aanaLLk~LEep-~~~~~fIL~a~~~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~~~~~--- 191 (394)
T PRK07940 116 GRWRIVVIEDADRLTERAANALLKAVEEP-PPRTVWLLCAPSPEDVLPTIRSRCRHVALRTPSVEAVAEVLVRRDGV--- 191 (394)
T ss_pred CCcEEEEEechhhcCHHHHHHHHHHhhcC-CCCCeEEEEECChHHChHHHHhhCeEEECCCCCHHHHHHHHHHhcCC---
Confidence 45568888999866666666666 43333 45666777666655466665555689999999999999888753211
Q ss_pred cccCCChHHHHHHHHHHHHcCCCchHHHHH
Q 001843 435 VLQSRSSELIKLKKQILNICDGLPLRVVLL 464 (1007)
Q Consensus 435 ~~~~~~~~~~~~~~~I~~~c~GlPLai~~~ 464 (1007)
+ .+.+..+++.++|.|.....+
T Consensus 192 -----~---~~~a~~la~~s~G~~~~A~~l 213 (394)
T PRK07940 192 -----D---PETARRAARASQGHIGRARRL 213 (394)
T ss_pred -----C---HHHHHHHHHHcCCCHHHHHHH
Confidence 1 245778899999999755444
No 79
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.11 E-value=2.8e-05 Score=89.02 Aligned_cols=174 Identities=14% Similarity=0.063 Sum_probs=94.8
Q ss_pred EEEEEEcCCCChHHHHHHHHHhhhhcccCCCceEEEEecCCCCCCHHHHHHHHHHHHhh-hhhhhccccCHHHHHHHHHH
Q 001843 274 QVIALIGKAGSGKTTLARIVYNRVYVKRHFTKRAWVHIPIMSMVEDRDVLADILKQIDE-SLLKVEATLSAEELMWRITQ 352 (1007)
Q Consensus 274 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~l~~il~~l~~-~~~~~~~~~~~~~l~~~l~~ 352 (1007)
..+.++|+.|+||||+|+.+++. +...-... ...+. ....-..+...+...+.. +........+..++.+.+..
T Consensus 41 ha~Lf~GP~GtGKTTlAriLAk~--Lnce~~~~-~~pCg--~C~sC~~i~~g~~~dviEIdaas~~gVd~IReL~e~l~~ 115 (484)
T PRK14956 41 HAYIFFGPRGVGKTTIARILAKR--LNCENPIG-NEPCN--ECTSCLEITKGISSDVLEIDAASNRGIENIRELRDNVKF 115 (484)
T ss_pred eEEEEECCCCCCHHHHHHHHHHh--cCcccccC-ccccC--CCcHHHHHHccCCccceeechhhcccHHHHHHHHHHHHh
Confidence 46789999999999999999983 32210000 00000 111111111100000000 00000001122222222222
Q ss_pred H-cCCCcEEEEEeCcCccCchhhhhhc-cccCCCCCCcEEEEEcCCCcccccccCCcceeeecCCCCHHHHHHHHHhhhc
Q 001843 353 A-LDDSTFLIVMENAEHQKSQVWDSFL-GKLCSFTQCGKIIITTSSTEDFVEPLGAAFSTLHVPGLGKNESWELFLKKAR 430 (1007)
Q Consensus 353 ~-L~~kr~LlVlDdv~~~~~~~~~~l~-~l~~~~~~gs~IliTTR~~~~va~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~ 430 (1007)
. ..++.-++|+|+++.-+.+.++.+. .+-.. .....+|.+|.....+.....+.+..|.+.+++.++..+.+.+.+.
T Consensus 116 ~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEP-p~~viFILaTte~~kI~~TI~SRCq~~~f~~ls~~~i~~~L~~i~~ 194 (484)
T PRK14956 116 APMGGKYKVYIIDEVHMLTDQSFNALLKTLEEP-PAHIVFILATTEFHKIPETILSRCQDFIFKKVPLSVLQDYSEKLCK 194 (484)
T ss_pred hhhcCCCEEEEEechhhcCHHHHHHHHHHhhcC-CCceEEEeecCChhhccHHHHhhhheeeecCCCHHHHHHHHHHHHH
Confidence 1 2355669999999877777888887 44332 3344444444443337666666658899999999998888887764
Q ss_pred cccccccCCChHHHHHHHHHHHHcCCCch
Q 001843 431 IAEDVLQSRSSELIKLKKQILNICDGLPL 459 (1007)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~~I~~~c~GlPL 459 (1007)
..+. .-..+....|++.++|.+-
T Consensus 195 ~Egi------~~e~eAL~~Ia~~S~Gd~R 217 (484)
T PRK14956 195 IENV------QYDQEGLFWIAKKGDGSVR 217 (484)
T ss_pred HcCC------CCCHHHHHHHHHHcCChHH
Confidence 3221 1124567889999999883
No 80
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.08 E-value=3.5e-05 Score=91.43 Aligned_cols=99 Identities=5% Similarity=-0.015 Sum_probs=64.6
Q ss_pred CCcEEEEEeCcCccCchhhhhhc-cccCCCCCCcEEEEEcCCCcccccccCCcceeeecCCCCHHHHHHHHHhhhccccc
Q 001843 356 DSTFLIVMENAEHQKSQVWDSFL-GKLCSFTQCGKIIITTSSTEDFVEPLGAAFSTLHVPGLGKNESWELFLKKARIAED 434 (1007)
Q Consensus 356 ~kr~LlVlDdv~~~~~~~~~~l~-~l~~~~~~gs~IliTTR~~~~va~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~ 434 (1007)
+++-++|||+++..+....+.+. .+-.. ...+++|++|.+...+.....+.+..+.+++++.++....+.+.+.....
T Consensus 118 gk~KVIIIDEad~Ls~~A~NALLKtLEEP-p~~v~fILaTtd~~kL~~TIrSRC~~f~f~~Ls~eeI~~~L~~Il~kEgi 196 (709)
T PRK08691 118 GKYKVYIIDEVHMLSKSAFNAMLKTLEEP-PEHVKFILATTDPHKVPVTVLSRCLQFVLRNMTAQQVADHLAHVLDSEKI 196 (709)
T ss_pred CCcEEEEEECccccCHHHHHHHHHHHHhC-CCCcEEEEEeCCccccchHHHHHHhhhhcCCCCHHHHHHHHHHHHHHcCC
Confidence 56669999999855555566666 44322 34556666665544355444444478889999999998888876654322
Q ss_pred cccCCChHHHHHHHHHHHHcCCCchHH
Q 001843 435 VLQSRSSELIKLKKQILNICDGLPLRV 461 (1007)
Q Consensus 435 ~~~~~~~~~~~~~~~I~~~c~GlPLai 461 (1007)
.-.......|++.++|.+--+
T Consensus 197 ------~id~eAL~~Ia~~A~GslRdA 217 (709)
T PRK08691 197 ------AYEPPALQLLGRAAAGSMRDA 217 (709)
T ss_pred ------CcCHHHHHHHHHHhCCCHHHH
Confidence 122456788999999888443
No 81
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.07 E-value=9.7e-06 Score=89.54 Aligned_cols=87 Identities=16% Similarity=0.157 Sum_probs=59.9
Q ss_pred EEEEEEcCCCChHHHHHHHHHhhhhcccCCCceEEEEecCCCCC--CHHHHHHHHHHHHhhhhhhhcccc--------CH
Q 001843 274 QVIALIGKAGSGKTTLARIVYNRVYVKRHFTKRAWVHIPIMSMV--EDRDVLADILKQIDESLLKVEATL--------SA 343 (1007)
Q Consensus 274 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~--~~~~~l~~il~~l~~~~~~~~~~~--------~~ 343 (1007)
+-..|+|++|+||||||++||++.... +|+.++||.+. ... +..++++.+...+-.. ..+... ..
T Consensus 170 QR~lIvgppGvGKTTLaK~Ian~I~~n-hFDv~~~VvLI--gER~~EVtdiqrsIlg~vv~s--t~d~~~~~~~~~a~~~ 244 (416)
T PRK09376 170 QRGLIVAPPKAGKTVLLQNIANSITTN-HPEVHLIVLLI--DERPEEVTDMQRSVKGEVVAS--TFDEPAERHVQVAEMV 244 (416)
T ss_pred ceEEEeCCCCCChhHHHHHHHHHHHhh-cCCeEEEEEEe--CCchhHHHHHHHHhcCcEEEE--CCCCCHHHHHHHHHHH
Confidence 678999999999999999999965444 89999999988 665 7778888876433221 111111 11
Q ss_pred HHHHHHHHHHcCCCcEEEEEeCcC
Q 001843 344 EELMWRITQALDDSTFLIVMENAE 367 (1007)
Q Consensus 344 ~~l~~~l~~~L~~kr~LlVlDdv~ 367 (1007)
-...+.++ -.+++++|++|++.
T Consensus 245 ie~Ae~~~--e~G~dVlL~iDsIt 266 (416)
T PRK09376 245 IEKAKRLV--EHGKDVVILLDSIT 266 (416)
T ss_pred HHHHHHHH--HcCCCEEEEEEChH
Confidence 11112222 36899999999996
No 82
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.07 E-value=3.9e-05 Score=91.50 Aligned_cols=102 Identities=7% Similarity=0.056 Sum_probs=68.2
Q ss_pred CCCcEEEEEeCcCccCchhhhhhc-cccCCCCCCcEEEEEcCCCcccccccCCcceeeecCCCCHHHHHHHHHhhhcccc
Q 001843 355 DDSTFLIVMENAEHQKSQVWDSFL-GKLCSFTQCGKIIITTSSTEDFVEPLGAAFSTLHVPGLGKNESWELFLKKARIAE 433 (1007)
Q Consensus 355 ~~kr~LlVlDdv~~~~~~~~~~l~-~l~~~~~~gs~IliTTR~~~~va~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~ 433 (1007)
.+++-++|||+++.-+....+.+. .+-.. ....++|++|.+...+.....+.+..|.+++|+.++..+.+.+.+....
T Consensus 117 ~g~~KV~IIDEah~Ls~~a~NALLKtLEEP-p~~v~FIL~Tt~~~kLl~TI~SRC~~~~f~~Ls~~ei~~~L~~il~~e~ 195 (647)
T PRK07994 117 RGRFKVYLIDEVHMLSRHSFNALLKTLEEP-PEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRQQLEHILQAEQ 195 (647)
T ss_pred cCCCEEEEEechHhCCHHHHHHHHHHHHcC-CCCeEEEEecCCccccchHHHhhheEeeCCCCCHHHHHHHHHHHHHHcC
Confidence 456679999999876777777776 33332 3455565555554436655555568999999999999988887653221
Q ss_pred ccccCCChHHHHHHHHHHHHcCCCchHHHH
Q 001843 434 DVLQSRSSELIKLKKQILNICDGLPLRVVL 463 (1007)
Q Consensus 434 ~~~~~~~~~~~~~~~~I~~~c~GlPLai~~ 463 (1007)
. .........|++.++|.+--+..
T Consensus 196 i------~~e~~aL~~Ia~~s~Gs~R~Al~ 219 (647)
T PRK07994 196 I------PFEPRALQLLARAADGSMRDALS 219 (647)
T ss_pred C------CCCHHHHHHHHHHcCCCHHHHHH
Confidence 1 11245567899999997754333
No 83
>PLN03150 hypothetical protein; Provisional
Probab=98.06 E-value=5.3e-06 Score=100.92 Aligned_cols=92 Identities=24% Similarity=0.311 Sum_probs=67.8
Q ss_pred cceEEEEeccccCCCCchhhhhhhccccccCCCCcccEEEecCCCCCCcCCCccccCCCcCcEEecccCCCc-ccCcccc
Q 001843 636 RLHSYLVFDSRIRGTPAKQIGIILGKCISKRRLGMLKVLDLEGVYKPMLTNNNALGRLPFLEYLGLRSTFID-SLPDSTP 714 (1007)
Q Consensus 636 ~LRsL~l~~~~~~~~~~~~i~~~l~~~~~~~~l~~Lr~L~Ls~~~l~~~~lp~~i~~L~~Lr~L~L~~n~i~-~LP~~i~ 714 (1007)
.++.|.+.++.+.+ .++..+ .++++|+.|+|++|.+.+ .+|..++.+.+|++|+|++|.+. .+|..++
T Consensus 419 ~v~~L~L~~n~L~g--------~ip~~i--~~L~~L~~L~Ls~N~l~g-~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~ 487 (623)
T PLN03150 419 FIDGLGLDNQGLRG--------FIPNDI--SKLRHLQSINLSGNSIRG-NIPPSLGSITSLEVLDLSYNSFNGSIPESLG 487 (623)
T ss_pred EEEEEECCCCCccc--------cCCHHH--hCCCCCCEEECCCCcccC-cCChHHhCCCCCCEEECCCCCCCCCCchHHh
Confidence 46677777776642 334455 778888888888888765 67777888888888888888877 6787888
Q ss_pred cCCCCCEEeecCCccc-cccccccc
Q 001843 715 ILFCLATLDVSHTKVQ-RLPYAFWP 738 (1007)
Q Consensus 715 ~L~~L~~L~L~~~~l~-~lP~~i~~ 738 (1007)
+|++|++|+|++|.+. .+|..+..
T Consensus 488 ~L~~L~~L~Ls~N~l~g~iP~~l~~ 512 (623)
T PLN03150 488 QLTSLRILNLNGNSLSGRVPAALGG 512 (623)
T ss_pred cCCCCCEEECcCCcccccCChHHhh
Confidence 8888888888888665 66766554
No 84
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.03 E-value=6e-05 Score=87.30 Aligned_cols=158 Identities=16% Similarity=0.139 Sum_probs=95.8
Q ss_pred EEEEEEcCCCChHHHHHHHHHhhhh------------------cc-cCCCceEEEEecCCCCCCHHHHHHHHHHHHhhhh
Q 001843 274 QVIALIGKAGSGKTTLARIVYNRVY------------------VK-RHFTKRAWVHIPIMSMVEDRDVLADILKQIDESL 334 (1007)
Q Consensus 274 ~vi~I~G~gGiGKTtLa~~v~~~~~------------------~~-~~F~~~~wv~~s~~~~~~~~~~l~~il~~l~~~~ 334 (1007)
..+-++|+.|+||||+|+.++.--. +. ..+..++.+..+ ...... -.++++..+...
T Consensus 36 ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv~eidaa--s~~~vd-dIR~Iie~~~~~- 111 (491)
T PRK14964 36 QSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDVIEIDAA--SNTSVD-DIKVILENSCYL- 111 (491)
T ss_pred ceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCEEEEecc--cCCCHH-HHHHHHHHHHhc-
Confidence 5788999999999999999986210 00 112233444433 222221 122232222110
Q ss_pred hhhccccCHHHHHHHHHHHcCCCcEEEEEeCcCccCchhhhhhc-cccCCCCCCcEEEEEcCCCcccccccCCcceeeec
Q 001843 335 LKVEATLSAEELMWRITQALDDSTFLIVMENAEHQKSQVWDSFL-GKLCSFTQCGKIIITTSSTEDFVEPLGAAFSTLHV 413 (1007)
Q Consensus 335 ~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~~~~~~~~l~-~l~~~~~~gs~IliTTR~~~~va~~~~~~~~~~~l 413 (1007)
-+.+++-++|+|+++.-+....+.+. .+-+. ...+++|++|.....+.......+..+++
T Consensus 112 ------------------P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEeP-p~~v~fIlatte~~Kl~~tI~SRc~~~~f 172 (491)
T PRK14964 112 ------------------PISSKFKVYIIDEVHMLSNSAFNALLKTLEEP-APHVKFILATTEVKKIPVTIISRCQRFDL 172 (491)
T ss_pred ------------------cccCCceEEEEeChHhCCHHHHHHHHHHHhCC-CCCeEEEEEeCChHHHHHHHHHhheeeec
Confidence 01245668999999865666677776 44333 45566666554433366555555589999
Q ss_pred CCCCHHHHHHHHHhhhccccccccCCChHHHHHHHHHHHHcCCCchH
Q 001843 414 PGLGKNESWELFLKKARIAEDVLQSRSSELIKLKKQILNICDGLPLR 460 (1007)
Q Consensus 414 ~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~~~~I~~~c~GlPLa 460 (1007)
++++.++..+.+.+.+..... .-..+....|++.++|.+-.
T Consensus 173 ~~l~~~el~~~L~~ia~~Egi------~i~~eAL~lIa~~s~GslR~ 213 (491)
T PRK14964 173 QKIPTDKLVEHLVDIAKKENI------EHDEESLKLIAENSSGSMRN 213 (491)
T ss_pred ccccHHHHHHHHHHHHHHcCC------CCCHHHHHHHHHHcCCCHHH
Confidence 999999999988887654332 12245667889999887753
No 85
>PRK08727 hypothetical protein; Validated
Probab=98.01 E-value=5.4e-05 Score=80.34 Aligned_cols=149 Identities=15% Similarity=0.107 Sum_probs=88.8
Q ss_pred EEEEEEcCCCChHHHHHHHHHhhhhcccCCCceEEEEecCCCCCCHHHHHHHHHHHHhhhhhhhccccCHHHHHHHHHHH
Q 001843 274 QVIALIGKAGSGKTTLARIVYNRVYVKRHFTKRAWVHIPIMSMVEDRDVLADILKQIDESLLKVEATLSAEELMWRITQA 353 (1007)
Q Consensus 274 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~l~~il~~l~~~~~~~~~~~~~~~l~~~l~~~ 353 (1007)
..+.|+|..|+|||+|++++++. ..+....++|+++. + ....+. +.+ +.
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~--~~~~~~~~~y~~~~--~------~~~~~~--------------------~~~-~~ 90 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAA--AEQAGRSSAYLPLQ--A------AAGRLR--------------------DAL-EA 90 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEEeHH--H------hhhhHH--------------------HHH-HH
Confidence 56999999999999999999984 44444456677654 1 000000 011 11
Q ss_pred cCCCcEEEEEeCcCccC-chhhhhhc-cccCC-CCCCcEEEEEcCCCcc--------cccccCCcceeeecCCCCHHHHH
Q 001843 354 LDDSTFLIVMENAEHQK-SQVWDSFL-GKLCS-FTQCGKIIITTSSTED--------FVEPLGAAFSTLHVPGLGKNESW 422 (1007)
Q Consensus 354 L~~kr~LlVlDdv~~~~-~~~~~~l~-~l~~~-~~~gs~IliTTR~~~~--------va~~~~~~~~~~~l~~L~~~ea~ 422 (1007)
+ .+.-+||+||+.... ...|.... .+.+. ...|..||+|++.... +...+... ..+++++++.++-.
T Consensus 91 l-~~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~SRl~~~-~~~~l~~~~~e~~~ 168 (233)
T PRK08727 91 L-EGRSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRSRLAQC-IRIGLPVLDDVARA 168 (233)
T ss_pred H-hcCCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHHHHHhcC-ceEEecCCCHHHHH
Confidence 1 233489999997321 22343332 22221 1346679999986431 11122222 68999999999999
Q ss_pred HHHHhhhccccccccCCChHHHHHHHHHHHHcCCCchHH
Q 001843 423 ELFLKKARIAEDVLQSRSSELIKLKKQILNICDGLPLRV 461 (1007)
Q Consensus 423 ~Lf~~~a~~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai 461 (1007)
+++.+++....- .-.++...-|++.+.|-.-.+
T Consensus 169 ~iL~~~a~~~~l------~l~~e~~~~La~~~~rd~r~~ 201 (233)
T PRK08727 169 AVLRERAQRRGL------ALDEAAIDWLLTHGERELAGL 201 (233)
T ss_pred HHHHHHHHHcCC------CCCHHHHHHHHHhCCCCHHHH
Confidence 999987754321 122456677888887655443
No 86
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.01 E-value=2.4e-07 Score=95.72 Aligned_cols=161 Identities=19% Similarity=0.166 Sum_probs=97.4
Q ss_pred hhhcCCCCCeEEeeecCCCchhhHHHHHHHhhcCCCCCeEEEeecCCCCC--CcccccCCCCCcEEEecccC---CCCCc
Q 001843 784 YFRRLTSLRKLGLKCSSTTSTSLKKEIIGAVLQLSELHSLKLICETPSYL--PLLEMAEHYKLQKLYLSGHL---PPNSV 858 (1007)
Q Consensus 784 ~l~~L~~L~~L~l~~~~~~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~--~~~~l~~~~~L~~L~L~g~~---~~lp~ 858 (1007)
-+..+.+|+.|.|.+++ -.+.+. ..+.+-.+|+.|+|+.+..... .---+.+|..|.+|+|+-|. ..+..
T Consensus 205 iLs~C~kLk~lSlEg~~-LdD~I~----~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv 279 (419)
T KOG2120|consen 205 ILSQCSKLKNLSLEGLR-LDDPIV----NTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTV 279 (419)
T ss_pred HHHHHHhhhhccccccc-cCcHHH----HHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhH
Confidence 35667778888888776 333333 7777788888888887432211 11234567788888887654 22222
Q ss_pred CccCCCCCCceEEEEEeee--cCCCCcCcc-ccCCCCcEEEeecCCcCCCceeecCCCCCCCcEEEeccCCCCcc-eEEc
Q 001843 859 IGDRSFPPNVVTLTLSQLR--LEYDPMPIL-GRLRQLKILRLFGGSYTGEEMSCSSGEFPNLLVLKLWKLNRLRQ-WRIK 934 (1007)
Q Consensus 859 ~~i~~~l~~L~~L~L~~~~--l~~~~~~~l-~~Lp~L~~L~L~~~~~~~~~l~~~~~~fp~L~~L~L~~~~~L~~-l~~~ 934 (1007)
.+.+.-++|+.|+|++|. +....+..+ ..+|+|..|+|+++.............|+.|++|.++.|..+.- --+.
T Consensus 280 -~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~ 358 (419)
T KOG2120|consen 280 -AVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDIIPETLLE 358 (419)
T ss_pred -HHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCCChHHeee
Confidence 233334678888888873 222333333 35788888888765544333333445677888888887765432 2234
Q ss_pred CCCCccccEeEeeccC
Q 001843 935 EGAMPCLRQLEIRSCG 950 (1007)
Q Consensus 935 ~~~~p~L~~L~l~~c~ 950 (1007)
.+.+|+|.+|++.+|-
T Consensus 359 l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 359 LNSKPSLVYLDVFGCV 374 (419)
T ss_pred eccCcceEEEEecccc
Confidence 4567777777777764
No 87
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.98 E-value=9e-05 Score=88.30 Aligned_cols=100 Identities=5% Similarity=0.044 Sum_probs=65.9
Q ss_pred CCcEEEEEeCcCccCchhhhhhc-cccCCCCCCcEEEEEcCCCcccccccCCcceeeecCCCCHHHHHHHHHhhhccccc
Q 001843 356 DSTFLIVMENAEHQKSQVWDSFL-GKLCSFTQCGKIIITTSSTEDFVEPLGAAFSTLHVPGLGKNESWELFLKKARIAED 434 (1007)
Q Consensus 356 ~kr~LlVlDdv~~~~~~~~~~l~-~l~~~~~~gs~IliTTR~~~~va~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~ 434 (1007)
++.-++|||+|+.-+...++.+. .+-.. ....++|++|.+...+.....+.+..+++++++.++..+.+.+.+...+.
T Consensus 123 g~~KV~IIDEvh~Ls~~a~NaLLKtLEEP-P~~~~fIL~Ttd~~kil~TIlSRc~~~~f~~Ls~eei~~~L~~i~~~egi 201 (618)
T PRK14951 123 GRFKVFMIDEVHMLTNTAFNAMLKTLEEP-PEYLKFVLATTDPQKVPVTVLSRCLQFNLRPMAPETVLEHLTQVLAAENV 201 (618)
T ss_pred CCceEEEEEChhhCCHHHHHHHHHhcccC-CCCeEEEEEECCchhhhHHHHHhceeeecCCCCHHHHHHHHHHHHHHcCC
Confidence 34458999999977777787777 44333 34556665554433255444444589999999999998888876644322
Q ss_pred cccCCChHHHHHHHHHHHHcCCCchHHH
Q 001843 435 VLQSRSSELIKLKKQILNICDGLPLRVV 462 (1007)
Q Consensus 435 ~~~~~~~~~~~~~~~I~~~c~GlPLai~ 462 (1007)
.-..+....|++.++|.+--+.
T Consensus 202 ------~ie~~AL~~La~~s~GslR~al 223 (618)
T PRK14951 202 ------PAEPQALRLLARAARGSMRDAL 223 (618)
T ss_pred ------CCCHHHHHHHHHHcCCCHHHHH
Confidence 1124567788889988774443
No 88
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.98 E-value=6.7e-06 Score=61.75 Aligned_cols=39 Identities=31% Similarity=0.367 Sum_probs=22.7
Q ss_pred cCcEEecccCCCcccCcccccCCCCCEEeecCCcccccc
Q 001843 695 FLEYLGLRSTFIDSLPDSTPILFCLATLDVSHTKVQRLP 733 (1007)
Q Consensus 695 ~Lr~L~L~~n~i~~LP~~i~~L~~L~~L~L~~~~l~~lP 733 (1007)
+|++|+|++|.|+.+|..+++|++|++|++++|.++.+|
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCc
Confidence 456666666666666655666666666666666555544
No 89
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=97.98 E-value=0.00017 Score=81.25 Aligned_cols=99 Identities=8% Similarity=0.124 Sum_probs=69.8
Q ss_pred CCcEEEEEeCcCccCchhhhhhc-cccCCCCCCcEEEEEcCCCcccccccCCcceeeecCCCCHHHHHHHHHhhhccccc
Q 001843 356 DSTFLIVMENAEHQKSQVWDSFL-GKLCSFTQCGKIIITTSSTEDFVEPLGAAFSTLHVPGLGKNESWELFLKKARIAED 434 (1007)
Q Consensus 356 ~kr~LlVlDdv~~~~~~~~~~l~-~l~~~~~~gs~IliTTR~~~~va~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~ 434 (1007)
+++-++|+|+++..+....+.+. .+-.. ..++.+|++|.+...+.....+.+..+.+.+++.++..+++.......
T Consensus 140 ~~~kVviIDead~m~~~aanaLLK~LEep-p~~~~~IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~~~~-- 216 (365)
T PRK07471 140 GGWRVVIVDTADEMNANAANALLKVLEEP-PARSLFLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAGPDL-- 216 (365)
T ss_pred CCCEEEEEechHhcCHHHHHHHHHHHhcC-CCCeEEEEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHhcccC--
Confidence 45679999999877777777777 43333 446677777777653655555555899999999999999998764221
Q ss_pred cccCCChHHHHHHHHHHHHcCCCchHHHHHH
Q 001843 435 VLQSRSSELIKLKKQILNICDGLPLRVVLLA 465 (1007)
Q Consensus 435 ~~~~~~~~~~~~~~~I~~~c~GlPLai~~~g 465 (1007)
. ......+++.++|.|+....+.
T Consensus 217 -----~---~~~~~~l~~~s~Gsp~~Al~ll 239 (365)
T PRK07471 217 -----P---DDPRAALAALAEGSVGRALRLA 239 (365)
T ss_pred -----C---HHHHHHHHHHcCCCHHHHHHHh
Confidence 1 1122678999999998665543
No 90
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=97.97 E-value=0.00011 Score=82.43 Aligned_cols=175 Identities=15% Similarity=0.211 Sum_probs=98.7
Q ss_pred EEEEEEcCCCChHHHHHHHHHhhhhcccC----CCceEEEEecCCCCCCHHHHHHHHHHHHhhhh--------hhh---c
Q 001843 274 QVIALIGKAGSGKTTLARIVYNRVYVKRH----FTKRAWVHIPIMSMVEDRDVLADILKQIDESL--------LKV---E 338 (1007)
Q Consensus 274 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----F~~~~wv~~s~~~~~~~~~~l~~il~~l~~~~--------~~~---~ 338 (1007)
..+.|+|..|+||||+|..+++. +-.+ +... ... ..+..-...+.+...-..+. .+. .
T Consensus 46 ha~L~~G~~G~GKttlA~~lA~~--Llc~~~~~~~~~---~~~--~~~~~c~~c~~i~~~~hPdl~~l~~~~~~~~~~~~ 118 (351)
T PRK09112 46 HALLFEGPEGIGKATLAFHLANH--ILSHPDPAEAPE---TLA--DPDPASPVWRQIAQGAHPNLLHITRPFDEKTGKFK 118 (351)
T ss_pred eeEeeECCCCCCHHHHHHHHHHH--HcCCCccccCcc---ccC--CCCCCCHHHHHHHcCCCCCEEEeeccccccccccc
Confidence 46889999999999999999883 3221 1111 000 11111112222222211000 000 0
Q ss_pred cccCHHHHHHHHHHHc-----CCCcEEEEEeCcCccCchhhhhhc-cccCCCCCCcEEEEEcCCCcccccccCCcceeee
Q 001843 339 ATLSAEELMWRITQAL-----DDSTFLIVMENAEHQKSQVWDSFL-GKLCSFTQCGKIIITTSSTEDFVEPLGAAFSTLH 412 (1007)
Q Consensus 339 ~~~~~~~l~~~l~~~L-----~~kr~LlVlDdv~~~~~~~~~~l~-~l~~~~~~gs~IliTTR~~~~va~~~~~~~~~~~ 412 (1007)
..-..++ ++.+.+++ .+++-++|+|+++.-+....+.+. .+-.. .....+|++|.....+.....+.+..++
T Consensus 119 ~~I~vd~-iR~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEp-p~~~~fiLit~~~~~llptIrSRc~~i~ 196 (351)
T PRK09112 119 TAITVDE-IRRVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEP-PARALFILISHSSGRLLPTIRSRCQPIS 196 (351)
T ss_pred ccCCHHH-HHHHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcC-CCCceEEEEECChhhccHHHHhhccEEE
Confidence 1111232 22344443 346669999999876777777776 44333 3344544444444336555555568999
Q ss_pred cCCCCHHHHHHHHHhhhccccccccCCChHHHHHHHHHHHHcCCCchHHHHHH
Q 001843 413 VPGLGKNESWELFLKKARIAEDVLQSRSSELIKLKKQILNICDGLPLRVVLLA 465 (1007)
Q Consensus 413 l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~g 465 (1007)
+.+++.++..+++....... . -..+.+..|++.++|.|.....+.
T Consensus 197 l~pl~~~~~~~~L~~~~~~~-------~-~~~~~~~~i~~~s~G~pr~Al~ll 241 (351)
T PRK09112 197 LKPLDDDELKKALSHLGSSQ-------G-SDGEITEALLQRSKGSVRKALLLL 241 (351)
T ss_pred ecCCCHHHHHHHHHHhhccc-------C-CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 99999999999998743211 1 113456789999999998655443
No 91
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.97 E-value=2.7e-07 Score=99.80 Aligned_cols=80 Identities=21% Similarity=0.157 Sum_probs=51.5
Q ss_pred CcccEEEecCCCCCCc-CCCccccCCCcCcEEecccCC-Ccc--cCcccccCCCCCEEeecCC-ccc-----cccccccc
Q 001843 669 GMLKVLDLEGVYKPML-TNNNALGRLPFLEYLGLRSTF-IDS--LPDSTPILFCLATLDVSHT-KVQ-----RLPYAFWP 738 (1007)
Q Consensus 669 ~~Lr~L~Ls~~~l~~~-~lp~~i~~L~~Lr~L~L~~n~-i~~--LP~~i~~L~~L~~L~L~~~-~l~-----~lP~~i~~ 738 (1007)
..||.|.|.|+.-.+. .+-..-.+++++..|.+.++. |++ +-.--..+++|++|++..| .++ .+..+..+
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k 217 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK 217 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence 3588899999874321 222334577888888887743 331 1111245788999999886 433 45667778
Q ss_pred cceeccccccccc
Q 001843 739 SRHLYLNWIFLAT 751 (1007)
Q Consensus 739 Lr~L~l~~~~~~~ 751 (1007)
|.+|+++ .|.
T Consensus 218 L~~lNlS---wc~ 227 (483)
T KOG4341|consen 218 LKYLNLS---WCP 227 (483)
T ss_pred HHHhhhc---cCc
Confidence 8888888 554
No 92
>PRK09087 hypothetical protein; Validated
Probab=97.97 E-value=0.00018 Score=75.79 Aligned_cols=160 Identities=14% Similarity=0.117 Sum_probs=92.7
Q ss_pred EEEEEEcCCCChHHHHHHHHHhhhhcccCCCceEEEEecCCCCCCHHHHHHHHHHHHhhhhhhhccccCHHHHHHHHHHH
Q 001843 274 QVIALIGKAGSGKTTLARIVYNRVYVKRHFTKRAWVHIPIMSMVEDRDVLADILKQIDESLLKVEATLSAEELMWRITQA 353 (1007)
Q Consensus 274 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~l~~il~~l~~~~~~~~~~~~~~~l~~~l~~~ 353 (1007)
+.+.|||..|+|||+|++.+++.. ...+++.. .+..+++ ..
T Consensus 45 ~~l~l~G~~GsGKThLl~~~~~~~-------~~~~i~~~--------~~~~~~~------------------------~~ 85 (226)
T PRK09087 45 PVVVLAGPVGSGKTHLASIWREKS-------DALLIHPN--------EIGSDAA------------------------NA 85 (226)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhc-------CCEEecHH--------HcchHHH------------------------Hh
Confidence 678999999999999999998742 11234321 0000000 01
Q ss_pred cCCCcEEEEEeCcCcc--Cchhhhhhc-cccCCCCCCcEEEEEcCCCc--------ccccccCCcceeeecCCCCHHHHH
Q 001843 354 LDDSTFLIVMENAEHQ--KSQVWDSFL-GKLCSFTQCGKIIITTSSTE--------DFVEPLGAAFSTLHVPGLGKNESW 422 (1007)
Q Consensus 354 L~~kr~LlVlDdv~~~--~~~~~~~l~-~l~~~~~~gs~IliTTR~~~--------~va~~~~~~~~~~~l~~L~~~ea~ 422 (1007)
+.. -+|++||+... +.+.+-.+. .+. ..|..||+|++... .+...+... .++++++++.++-.
T Consensus 86 ~~~--~~l~iDDi~~~~~~~~~lf~l~n~~~---~~g~~ilits~~~p~~~~~~~~dL~SRl~~g-l~~~l~~pd~e~~~ 159 (226)
T PRK09087 86 AAE--GPVLIEDIDAGGFDETGLFHLINSVR---QAGTSLLMTSRLWPSSWNVKLPDLKSRLKAA-TVVEIGEPDDALLS 159 (226)
T ss_pred hhc--CeEEEECCCCCCCCHHHHHHHHHHHH---hCCCeEEEECCCChHHhccccccHHHHHhCC-ceeecCCCCHHHHH
Confidence 111 27888999632 222222222 333 33667999987422 133333444 89999999999999
Q ss_pred HHHHhhhccccccccCCChHHHHHHHHHHHHcCCCchHHHHHHHHh------cCCCCChHHHHHHHHH
Q 001843 423 ELFLKKARIAEDVLQSRSSELIKLKKQILNICDGLPLRVVLLAGLL------STKQPSYEEWSKVIER 484 (1007)
Q Consensus 423 ~Lf~~~a~~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~g~~L------~~~~~~~~~w~~~l~~ 484 (1007)
+++.+.+....- .. .+++..-|++++.|..-++..+-..| ..+.-+....+.+++.
T Consensus 160 ~iL~~~~~~~~~---~l---~~ev~~~La~~~~r~~~~l~~~l~~L~~~~~~~~~~it~~~~~~~l~~ 221 (226)
T PRK09087 160 QVIFKLFADRQL---YV---DPHVVYYLVSRMERSLFAAQTIVDRLDRLALERKSRITRALAAEVLNE 221 (226)
T ss_pred HHHHHHHHHcCC---CC---CHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHh
Confidence 999988754321 11 24566777777777766655432222 2333355666665543
No 93
>PRK08084 DNA replication initiation factor; Provisional
Probab=97.97 E-value=7.8e-05 Score=79.24 Aligned_cols=152 Identities=14% Similarity=0.191 Sum_probs=89.1
Q ss_pred EEEEEEcCCCChHHHHHHHHHhhhhcccCCCceEEEEecCCCCCCHHHHHHHHHHHHhhhhhhhccccCHHHHHHHHHHH
Q 001843 274 QVIALIGKAGSGKTTLARIVYNRVYVKRHFTKRAWVHIPIMSMVEDRDVLADILKQIDESLLKVEATLSAEELMWRITQA 353 (1007)
Q Consensus 274 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~l~~il~~l~~~~~~~~~~~~~~~l~~~l~~~ 353 (1007)
+.+.|+|+.|+|||+|++.+++. ....-..+.++.+. .... ......+.+.
T Consensus 46 ~~l~l~Gp~G~GKThLl~a~~~~--~~~~~~~v~y~~~~--~~~~-----------------------~~~~~~~~~~-- 96 (235)
T PRK08084 46 GYIYLWSREGAGRSHLLHAACAE--LSQRGRAVGYVPLD--KRAW-----------------------FVPEVLEGME-- 96 (235)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH--HHhCCCeEEEEEHH--HHhh-----------------------hhHHHHHHhh--
Confidence 57899999999999999999984 43333456677665 1000 0001111111
Q ss_pred cCCCcEEEEEeCcCccC-chhhhhhc-cccCC-CCCC-cEEEEEcCCCc--------ccccccCCcceeeecCCCCHHHH
Q 001843 354 LDDSTFLIVMENAEHQK-SQVWDSFL-GKLCS-FTQC-GKIIITTSSTE--------DFVEPLGAAFSTLHVPGLGKNES 421 (1007)
Q Consensus 354 L~~kr~LlVlDdv~~~~-~~~~~~l~-~l~~~-~~~g-s~IliTTR~~~--------~va~~~~~~~~~~~l~~L~~~ea 421 (1007)
. --+|++||+.... ...|+... .+.+. ...| .++|+||+... .+...+.+. .++++++++.++-
T Consensus 97 --~-~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L~SRl~~g-~~~~l~~~~~~~~ 172 (235)
T PRK08084 97 --Q-LSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDLASRLDWG-QIYKLQPLSDEEK 172 (235)
T ss_pred --h-CCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHHHHHHhCC-ceeeecCCCHHHH
Confidence 1 2388999997322 23454322 11111 0123 47999998653 022233333 7899999999999
Q ss_pred HHHHHhhhccccccccCCChHHHHHHHHHHHHcCCCchHHHHH
Q 001843 422 WELFLKKARIAEDVLQSRSSELIKLKKQILNICDGLPLRVVLL 464 (1007)
Q Consensus 422 ~~Lf~~~a~~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~ 464 (1007)
.+++.+++....- . -.++...-|++.+.|-.-++..+
T Consensus 173 ~~~l~~~a~~~~~---~---l~~~v~~~L~~~~~~d~r~l~~~ 209 (235)
T PRK08084 173 LQALQLRARLRGF---E---LPEDVGRFLLKRLDREMRTLFMT 209 (235)
T ss_pred HHHHHHHHHHcCC---C---CCHHHHHHHHHhhcCCHHHHHHH
Confidence 9998876654221 1 22466777888887665544433
No 94
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=97.96 E-value=0.0001 Score=86.81 Aligned_cols=103 Identities=14% Similarity=0.141 Sum_probs=65.4
Q ss_pred CcEEEEEeCcCccCchhhhhhc-cccCCCCCCcEEEEEcCCCcccccccCCcceeeecCCCCHHHHHHHHHhhhcccccc
Q 001843 357 STFLIVMENAEHQKSQVWDSFL-GKLCSFTQCGKIIITTSSTEDFVEPLGAAFSTLHVPGLGKNESWELFLKKARIAEDV 435 (1007)
Q Consensus 357 kr~LlVlDdv~~~~~~~~~~l~-~l~~~~~~gs~IliTTR~~~~va~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~ 435 (1007)
++-++|+|+++.-+...++.+. .+-.. ...+.+|++|.....+.......+..+++.++++++....+...+.....
T Consensus 119 ~~KVIIIDEad~Lt~~A~NaLLKtLEEP-p~~tvfIL~Tt~~~KLl~TI~SRcq~ieF~~Ls~~eL~~~L~~il~kegi- 196 (605)
T PRK05896 119 KYKVYIIDEAHMLSTSAWNALLKTLEEP-PKHVVFIFATTEFQKIPLTIISRCQRYNFKKLNNSELQELLKSIAKKEKI- 196 (605)
T ss_pred CcEEEEEechHhCCHHHHHHHHHHHHhC-CCcEEEEEECCChHhhhHHHHhhhhhcccCCCCHHHHHHHHHHHHHHcCC-
Confidence 3447999999865666777777 44333 34455555554443355444444488999999999998888876543221
Q ss_pred ccCCChHHHHHHHHHHHHcCCCc-hHHHHHHH
Q 001843 436 LQSRSSELIKLKKQILNICDGLP-LRVVLLAG 466 (1007)
Q Consensus 436 ~~~~~~~~~~~~~~I~~~c~GlP-Lai~~~g~ 466 (1007)
..+ .+.+..|++.++|-+ .|+..+-.
T Consensus 197 --~Is---~eal~~La~lS~GdlR~AlnlLek 223 (605)
T PRK05896 197 --KIE---DNAIDKIADLADGSLRDGLSILDQ 223 (605)
T ss_pred --CCC---HHHHHHHHHHcCCcHHHHHHHHHH
Confidence 111 355778899999855 55555554
No 95
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=97.94 E-value=0.00011 Score=83.86 Aligned_cols=103 Identities=9% Similarity=0.021 Sum_probs=66.0
Q ss_pred CCcEEEEEeCcCccCchhhhhhc-cccCCCCCCcEEEEEcCCCcccccccCCcceeeecCCCCHHHHHHHHHhhhccccc
Q 001843 356 DSTFLIVMENAEHQKSQVWDSFL-GKLCSFTQCGKIIITTSSTEDFVEPLGAAFSTLHVPGLGKNESWELFLKKARIAED 434 (1007)
Q Consensus 356 ~kr~LlVlDdv~~~~~~~~~~l~-~l~~~~~~gs~IliTTR~~~~va~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~ 434 (1007)
+++-++|+|+++.-+...++.+. .+... ...+.+|++|.+...+..........+++.++++++..+.+...+.....
T Consensus 116 ~~~~vviidea~~l~~~~~~~Ll~~le~~-~~~~~lIl~~~~~~~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~g~ 194 (355)
T TIGR02397 116 GKYKVYIIDEVHMLSKSAFNALLKTLEEP-PEHVVFILATTEPHKIPATILSRCQRFDFKRIPLEDIVERLKKILDKEGI 194 (355)
T ss_pred CCceEEEEeChhhcCHHHHHHHHHHHhCC-ccceeEEEEeCCHHHHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence 45558999998744555566666 54333 44566666665444244333333378899999999998888876643321
Q ss_pred cccCCChHHHHHHHHHHHHcCCCchHHHHHH
Q 001843 435 VLQSRSSELIKLKKQILNICDGLPLRVVLLA 465 (1007)
Q Consensus 435 ~~~~~~~~~~~~~~~I~~~c~GlPLai~~~g 465 (1007)
. -..+.+..|++.++|.|-.+....
T Consensus 195 ---~---i~~~a~~~l~~~~~g~~~~a~~~l 219 (355)
T TIGR02397 195 ---K---IEDEALELIARAADGSLRDALSLL 219 (355)
T ss_pred ---C---CCHHHHHHHHHHcCCChHHHHHHH
Confidence 1 114677888999999886655443
No 96
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.93 E-value=9.4e-05 Score=87.08 Aligned_cols=159 Identities=13% Similarity=0.112 Sum_probs=90.8
Q ss_pred EEEEEEcCCCChHHHHHHHHHhhhhcc-------------------cCCCceEEEEecCCCCCCHHHHHHHHHHHHhhhh
Q 001843 274 QVIALIGKAGSGKTTLARIVYNRVYVK-------------------RHFTKRAWVHIPIMSMVEDRDVLADILKQIDESL 334 (1007)
Q Consensus 274 ~vi~I~G~gGiGKTtLa~~v~~~~~~~-------------------~~F~~~~wv~~s~~~~~~~~~~l~~il~~l~~~~ 334 (1007)
..+.++|+.|+||||+|+.+++.-.-. +.|..++.+... ......+ .++++..+...
T Consensus 39 ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d~~eidaa--s~~~v~~-iR~l~~~~~~~- 114 (509)
T PRK14958 39 HAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPDLFEVDAA--SRTKVED-TRELLDNIPYA- 114 (509)
T ss_pred eeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCceEEEEccc--ccCCHHH-HHHHHHHHhhc-
Confidence 567899999999999999998832111 112223333322 1111111 12222221110
Q ss_pred hhhccccCHHHHHHHHHHHcCCCcEEEEEeCcCccCchhhhhhc-cccCCCCCCcEEEEEcCCCcccccccCCcceeeec
Q 001843 335 LKVEATLSAEELMWRITQALDDSTFLIVMENAEHQKSQVWDSFL-GKLCSFTQCGKIIITTSSTEDFVEPLGAAFSTLHV 413 (1007)
Q Consensus 335 ~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~~~~~~~~l~-~l~~~~~~gs~IliTTR~~~~va~~~~~~~~~~~l 413 (1007)
-..++.-++|+|+++.-+....+.+. .+-.. ...+++|++|.+...+.....+.+..+++
T Consensus 115 ------------------p~~~~~kV~iIDE~~~ls~~a~naLLk~LEep-p~~~~fIlattd~~kl~~tI~SRc~~~~f 175 (509)
T PRK14958 115 ------------------PTKGRFKVYLIDEVHMLSGHSFNALLKTLEEP-PSHVKFILATTDHHKLPVTVLSRCLQFHL 175 (509)
T ss_pred ------------------cccCCcEEEEEEChHhcCHHHHHHHHHHHhcc-CCCeEEEEEECChHhchHHHHHHhhhhhc
Confidence 11345568999999866667777666 44333 44566666554443255444444478999
Q ss_pred CCCCHHHHHHHHHhhhccccccccCCChHHHHHHHHHHHHcCCCchHH
Q 001843 414 PGLGKNESWELFLKKARIAEDVLQSRSSELIKLKKQILNICDGLPLRV 461 (1007)
Q Consensus 414 ~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai 461 (1007)
++++.++-.+.+.+.+...+. .-.......|++.++|-+--+
T Consensus 176 ~~l~~~~i~~~l~~il~~egi------~~~~~al~~ia~~s~GslR~a 217 (509)
T PRK14958 176 AQLPPLQIAAHCQHLLKEENV------EFENAALDLLARAANGSVRDA 217 (509)
T ss_pred CCCCHHHHHHHHHHHHHHcCC------CCCHHHHHHHHHHcCCcHHHH
Confidence 999999877766655543221 112345677888898877443
No 97
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=97.91 E-value=3.8e-05 Score=87.54 Aligned_cols=153 Identities=16% Similarity=0.161 Sum_probs=83.1
Q ss_pred EEEEEEcCCCChHHHHHHHHHhhhhcccCCCceEEEEecCCCCCCHHHHHHHHHHHHhhhhhhhccccCHHHHHHHHHHH
Q 001843 274 QVIALIGKAGSGKTTLARIVYNRVYVKRHFTKRAWVHIPIMSMVEDRDVLADILKQIDESLLKVEATLSAEELMWRITQA 353 (1007)
Q Consensus 274 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~l~~il~~l~~~~~~~~~~~~~~~l~~~l~~~ 353 (1007)
+-+.++|++|+|||++|+++++ .....| +.+. . ..+..... +. ....+...+...
T Consensus 157 ~gvLL~GppGtGKT~lakaia~--~l~~~~-----~~v~--~----~~l~~~~~---g~---------~~~~i~~~f~~a 211 (364)
T TIGR01242 157 KGVLLYGPPGTGKTLLAKAVAH--ETNATF-----IRVV--G----SELVRKYI---GE---------GARLVREIFELA 211 (364)
T ss_pred ceEEEECCCCCCHHHHHHHHHH--hCCCCE-----Eecc--h----HHHHHHhh---hH---------HHHHHHHHHHHH
Confidence 6689999999999999999999 444443 2222 1 11111110 00 011111122222
Q ss_pred cCCCcEEEEEeCcCcc-----------Cch---hhhhhc-ccc--CCCCCCcEEEEEcCCCcccccccC---Ccceeeec
Q 001843 354 LDDSTFLIVMENAEHQ-----------KSQ---VWDSFL-GKL--CSFTQCGKIIITTSSTEDFVEPLG---AAFSTLHV 413 (1007)
Q Consensus 354 L~~kr~LlVlDdv~~~-----------~~~---~~~~l~-~l~--~~~~~gs~IliTTR~~~~va~~~~---~~~~~~~l 413 (1007)
-...+.+|+||+++.. +.. .+..+. .+. .. ..+.+||.||.....+..... .....+.+
T Consensus 212 ~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~-~~~v~vI~ttn~~~~ld~al~r~grfd~~i~v 290 (364)
T TIGR01242 212 KEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDP-RGNVKVIAATNRPDILDPALLRPGRFDRIIEV 290 (364)
T ss_pred HhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCC-CCCEEEEEecCChhhCChhhcCcccCceEEEe
Confidence 2346789999999731 111 122222 111 11 235678888876541222211 11167899
Q ss_pred CCCCHHHHHHHHHhhhccccccccCCChHHHHHHHHHHHHcCCCch
Q 001843 414 PGLGKNESWELFLKKARIAEDVLQSRSSELIKLKKQILNICDGLPL 459 (1007)
Q Consensus 414 ~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~~~~I~~~c~GlPL 459 (1007)
+..+.++..++|..++...... +. .....+++.+.|..-
T Consensus 291 ~~P~~~~r~~Il~~~~~~~~l~-----~~--~~~~~la~~t~g~sg 329 (364)
T TIGR01242 291 PLPDFEGRLEILKIHTRKMKLA-----ED--VDLEAIAKMTEGASG 329 (364)
T ss_pred CCcCHHHHHHHHHHHHhcCCCC-----cc--CCHHHHHHHcCCCCH
Confidence 9999999999999887553321 10 124567777777653
No 98
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.90 E-value=1.7e-06 Score=91.94 Aligned_cols=194 Identities=19% Similarity=0.046 Sum_probs=107.9
Q ss_pred CCCCcccEEEecCCCCCCc---CCCccccCCCcCcEEecccC--C--CcccCcc-------cccCCCCCEEeecCCccc-
Q 001843 666 RRLGMLKVLDLEGVYKPML---TNNNALGRLPFLEYLGLRST--F--IDSLPDS-------TPILFCLATLDVSHTKVQ- 730 (1007)
Q Consensus 666 ~~l~~Lr~L~Ls~~~l~~~---~lp~~i~~L~~Lr~L~L~~n--~--i~~LP~~-------i~~L~~L~~L~L~~~~l~- 730 (1007)
..+..+..|+||+|.+..+ .+-..+.+.++|+.-++++- . ..++|+. +-..++|++||||.|-+.
T Consensus 27 ~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~ 106 (382)
T KOG1909|consen 27 EPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGP 106 (382)
T ss_pred cccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCc
Confidence 6888999999999987621 13345667789999999872 2 2356654 345678999999999433
Q ss_pred cccc-------cccccceecccccccccccccccccccCcCCCccccceeeCCCcccChHhhhcCCCCCeEEeeecC-CC
Q 001843 731 RLPY-------AFWPSRHLYLNWIFLATNVFRHPQFVKWETSLQTLWGLCIKADEVQSLDYFRRLTSLRKLGLKCSS-TT 802 (1007)
Q Consensus 731 ~lP~-------~i~~Lr~L~l~~~~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~-~~ 802 (1007)
.-+. +...|+||+|. +|..+..--..++ ..|..|. ...-.+.-++|+.+....|. .+
T Consensus 107 ~g~~~l~~ll~s~~~L~eL~L~---N~Glg~~ag~~l~--~al~~l~----------~~kk~~~~~~Lrv~i~~rNrlen 171 (382)
T KOG1909|consen 107 KGIRGLEELLSSCTDLEELYLN---NCGLGPEAGGRLG--RALFELA----------VNKKAASKPKLRVFICGRNRLEN 171 (382)
T ss_pred cchHHHHHHHHhccCHHHHhhh---cCCCChhHHHHHH--HHHHHHH----------HHhccCCCcceEEEEeecccccc
Confidence 2222 23333777776 5543221111111 1122221 11113445677888777776 11
Q ss_pred --chhhHHHHHHHhhcCCCCCeEEEeecCCCCC----CcccccCCCCCcEEEecccC-CC-----CCcCccCCCCCCceE
Q 001843 803 --STSLKKEIIGAVLQLSELHSLKLICETPSYL----PLLEMAEHYKLQKLYLSGHL-PP-----NSVIGDRSFPPNVVT 870 (1007)
Q Consensus 803 --~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~----~~~~l~~~~~L~~L~L~g~~-~~-----lp~~~i~~~l~~L~~ 870 (1007)
...+. ..+...+.|+.+.+..|..... ....+..+++|+.|+|..|. +. +.. .+.. +++|+.
T Consensus 172 ~ga~~~A----~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~Lak-aL~s-~~~L~E 245 (382)
T KOG1909|consen 172 GGATALA----EAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAK-ALSS-WPHLRE 245 (382)
T ss_pred ccHHHHH----HHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHH-Hhcc-cchhee
Confidence 12222 5566667888888877544322 12345556666666666544 11 111 1222 556666
Q ss_pred EEEEeeecCC
Q 001843 871 LTLSQLRLEY 880 (1007)
Q Consensus 871 L~L~~~~l~~ 880 (1007)
|++++|.+..
T Consensus 246 l~l~dcll~~ 255 (382)
T KOG1909|consen 246 LNLGDCLLEN 255 (382)
T ss_pred eccccccccc
Confidence 6666665543
No 99
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.88 E-value=0.00012 Score=84.18 Aligned_cols=102 Identities=9% Similarity=0.032 Sum_probs=65.5
Q ss_pred CCcEEEEEeCcCccCchhhhhhc-cccCCCCCCcEEEEEcCCCcccccccCCcceeeecCCCCHHHHHHHHHhhhccccc
Q 001843 356 DSTFLIVMENAEHQKSQVWDSFL-GKLCSFTQCGKIIITTSSTEDFVEPLGAAFSTLHVPGLGKNESWELFLKKARIAED 434 (1007)
Q Consensus 356 ~kr~LlVlDdv~~~~~~~~~~l~-~l~~~~~~gs~IliTTR~~~~va~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~ 434 (1007)
+++-++|+|+++.-+...++.+. .+-+. ...+.+|++|.....+..........++++++++++..+.+...+.....
T Consensus 126 ~~~kvvIIdea~~l~~~~~~~LLk~LEep-~~~t~~Il~t~~~~kl~~tl~sR~~~v~f~~l~~~ei~~~l~~~~~~~g~ 204 (397)
T PRK14955 126 GRYRVYIIDEVHMLSIAAFNAFLKTLEEP-PPHAIFIFATTELHKIPATIASRCQRFNFKRIPLEEIQQQLQGICEAEGI 204 (397)
T ss_pred CCeEEEEEeChhhCCHHHHHHHHHHHhcC-CCCeEEEEEeCChHHhHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHcCC
Confidence 45568899999865666777777 54433 45566665553332255444433478999999999988887776533211
Q ss_pred cccCCChHHHHHHHHHHHHcCCCch-HHHHH
Q 001843 435 VLQSRSSELIKLKKQILNICDGLPL-RVVLL 464 (1007)
Q Consensus 435 ~~~~~~~~~~~~~~~I~~~c~GlPL-ai~~~ 464 (1007)
.-..+.+..|++.++|.+- |+..+
T Consensus 205 ------~i~~~al~~l~~~s~g~lr~a~~~L 229 (397)
T PRK14955 205 ------SVDADALQLIGRKAQGSMRDAQSIL 229 (397)
T ss_pred ------CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 1224677889999999774 44433
No 100
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=97.87 E-value=0.00018 Score=76.30 Aligned_cols=151 Identities=11% Similarity=0.057 Sum_probs=85.8
Q ss_pred EEEEEEcCCCChHHHHHHHHHhhhhcccCCCceEEEEecCCCCCCHHHHHHHHHHHHhhhhhhhccccCHHHHHHHHHHH
Q 001843 274 QVIALIGKAGSGKTTLARIVYNRVYVKRHFTKRAWVHIPIMSMVEDRDVLADILKQIDESLLKVEATLSAEELMWRITQA 353 (1007)
Q Consensus 274 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~l~~il~~l~~~~~~~~~~~~~~~l~~~l~~~ 353 (1007)
+.+.|+|..|+|||+||+.+++... ... ...++++.. ... . .+ ..
T Consensus 43 ~~~~l~G~~G~GKT~La~ai~~~~~-~~~-~~~~~i~~~--~~~------~----~~---------------------~~ 87 (227)
T PRK08903 43 RFFYLWGEAGSGRSHLLQALVADAS-YGG-RNARYLDAA--SPL------L----AF---------------------DF 87 (227)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH-hCC-CcEEEEehH--HhH------H----HH---------------------hh
Confidence 6788999999999999999999421 222 234555543 110 0 00 11
Q ss_pred cCCCcEEEEEeCcCccCchhhhhhc-cccCCCCCCc-EEEEEcCCCccccc--------ccCCcceeeecCCCCHHHHHH
Q 001843 354 LDDSTFLIVMENAEHQKSQVWDSFL-GKLCSFTQCG-KIIITTSSTEDFVE--------PLGAAFSTLHVPGLGKNESWE 423 (1007)
Q Consensus 354 L~~kr~LlVlDdv~~~~~~~~~~l~-~l~~~~~~gs-~IliTTR~~~~va~--------~~~~~~~~~~l~~L~~~ea~~ 423 (1007)
. ...-+||+||+...+...-..+. .+......+. .||+|++... ... .+... ..++++++++++-..
T Consensus 88 ~-~~~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~-~~~~l~~~L~sr~~~~-~~i~l~pl~~~~~~~ 164 (227)
T PRK08903 88 D-PEAELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAP-LALPLREDLRTRLGWG-LVYELKPLSDADKIA 164 (227)
T ss_pred c-ccCCEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCH-HhCCCCHHHHHHHhcC-eEEEecCCCHHHHHH
Confidence 1 23347899999743332323333 2221102233 4666766433 222 21112 688999999988777
Q ss_pred HHHhhhccccccccCCChHHHHHHHHHHHHcCCCchHHHHHHHHh
Q 001843 424 LFLKKARIAEDVLQSRSSELIKLKKQILNICDGLPLRVVLLAGLL 468 (1007)
Q Consensus 424 Lf~~~a~~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~g~~L 468 (1007)
++.+.+-.... .-.++....+++.+.|.+..+..+-..+
T Consensus 165 ~l~~~~~~~~v------~l~~~al~~L~~~~~gn~~~l~~~l~~l 203 (227)
T PRK08903 165 ALKAAAAERGL------QLADEVPDYLLTHFRRDMPSLMALLDAL 203 (227)
T ss_pred HHHHHHHHcCC------CCCHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 76654322111 1124577778888999888877666554
No 101
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=97.86 E-value=0.00021 Score=88.23 Aligned_cols=98 Identities=7% Similarity=0.015 Sum_probs=64.9
Q ss_pred CCCcEEEEEeCcCccCchhhhhhc-cccCCCCCCcEEEEEcCCCcccccccCCcceeeecCCCCHHHHHHHHHhhhcccc
Q 001843 355 DDSTFLIVMENAEHQKSQVWDSFL-GKLCSFTQCGKIIITTSSTEDFVEPLGAAFSTLHVPGLGKNESWELFLKKARIAE 433 (1007)
Q Consensus 355 ~~kr~LlVlDdv~~~~~~~~~~l~-~l~~~~~~gs~IliTTR~~~~va~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~ 433 (1007)
.++.-++|||+++..+...++.|+ .+-+- ...+.+|++|.+.+.+...+.+.+..|++..++.++-.+.+.+.+....
T Consensus 118 ~~~~KV~IIDEad~lt~~a~NaLLK~LEEp-P~~~~fIl~tt~~~kLl~TIrSRc~~v~F~~l~~~~l~~~L~~il~~EG 196 (824)
T PRK07764 118 ESRYKIFIIDEAHMVTPQGFNALLKIVEEP-PEHLKFIFATTEPDKVIGTIRSRTHHYPFRLVPPEVMRGYLERICAQEG 196 (824)
T ss_pred cCCceEEEEechhhcCHHHHHHHHHHHhCC-CCCeEEEEEeCChhhhhHHHHhheeEEEeeCCCHHHHHHHHHHHHHHcC
Confidence 355568999999877777788777 44333 4455655555443326665565558999999999998888877553322
Q ss_pred ccccCCChHHHHHHHHHHHHcCCCch
Q 001843 434 DVLQSRSSELIKLKKQILNICDGLPL 459 (1007)
Q Consensus 434 ~~~~~~~~~~~~~~~~I~~~c~GlPL 459 (1007)
. .........|++.++|.+.
T Consensus 197 v------~id~eal~lLa~~sgGdlR 216 (824)
T PRK07764 197 V------PVEPGVLPLVIRAGGGSVR 216 (824)
T ss_pred C------CCCHHHHHHHHHHcCCCHH
Confidence 1 1123456778889999774
No 102
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.86 E-value=0.00019 Score=85.18 Aligned_cols=103 Identities=7% Similarity=0.002 Sum_probs=65.2
Q ss_pred CCcEEEEEeCcCccCchhhhhhc-cccCCCCCCcEEEEEcCCCcccccccCCcceeeecCCCCHHHHHHHHHhhhccccc
Q 001843 356 DSTFLIVMENAEHQKSQVWDSFL-GKLCSFTQCGKIIITTSSTEDFVEPLGAAFSTLHVPGLGKNESWELFLKKARIAED 434 (1007)
Q Consensus 356 ~kr~LlVlDdv~~~~~~~~~~l~-~l~~~~~~gs~IliTTR~~~~va~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~ 434 (1007)
+++-++|+|+++.-+....+.+. .+-.. ...+.+|++|.+...+.....+.+..+++++++.++..+.+.+.+...+.
T Consensus 118 ~~~kVvIIDEad~ls~~a~naLLK~LEep-p~~~~fIL~t~d~~kil~tI~SRc~~~~f~~l~~~~i~~~L~~il~~egi 196 (527)
T PRK14969 118 GRFKVYIIDEVHMLSKSAFNAMLKTLEEP-PEHVKFILATTDPQKIPVTVLSRCLQFNLKQMPPPLIVSHLQHILEQENI 196 (527)
T ss_pred CCceEEEEcCcccCCHHHHHHHHHHHhCC-CCCEEEEEEeCChhhCchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCC
Confidence 56679999999866666666666 44333 34555665554443254444444489999999999998887776543221
Q ss_pred cccCCChHHHHHHHHHHHHcCCCch-HHHHHH
Q 001843 435 VLQSRSSELIKLKKQILNICDGLPL-RVVLLA 465 (1007)
Q Consensus 435 ~~~~~~~~~~~~~~~I~~~c~GlPL-ai~~~g 465 (1007)
...+.....|++.++|.+- |+..+-
T Consensus 197 ------~~~~~al~~la~~s~Gslr~al~lld 222 (527)
T PRK14969 197 ------PFDATALQLLARAAAGSMRDALSLLD 222 (527)
T ss_pred ------CCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 1123556788899999764 444443
No 103
>PF14516 AAA_35: AAA-like domain
Probab=97.85 E-value=0.002 Score=72.19 Aligned_cols=188 Identities=14% Similarity=0.134 Sum_probs=110.6
Q ss_pred EEEEEEcCCCChHHHHHHHHHhhhhcccCCCceEEEEecCCCC---CCHHHHHHHHHHHHhhhhhhhc--------cccC
Q 001843 274 QVIALIGKAGSGKTTLARIVYNRVYVKRHFTKRAWVHIPIMSM---VEDRDVLADILKQIDESLLKVE--------ATLS 342 (1007)
Q Consensus 274 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~---~~~~~~l~~il~~l~~~~~~~~--------~~~~ 342 (1007)
+.+.|.|+-.+|||+|..++.+. .++.=-.++++++..... .+....++.++..+...+.-.. ....
T Consensus 32 ~~~~I~apRq~GKTSll~~l~~~--l~~~~~~~v~id~~~~~~~~~~~~~~f~~~~~~~i~~~L~l~~~l~~~w~~~~~~ 109 (331)
T PF14516_consen 32 SYIRIKAPRQMGKTSLLLRLLER--LQQQGYRCVYIDLQQLGSAIFSDLEQFLRWFCEEISRQLKLDEKLDEYWDEEIGS 109 (331)
T ss_pred CEEEEECcccCCHHHHHHHHHHH--HHHCCCEEEEEEeecCCCcccCCHHHHHHHHHHHHHHHcCCChhHHHHHHHhcCC
Confidence 78999999999999999999884 433222356787652111 3566667777666655421110 1112
Q ss_pred HHHHHHHHHHHc---CCCcEEEEEeCcCccC------chhhhhhccccCC------CCCCcEEEEEcCCCcccccc----
Q 001843 343 AEELMWRITQAL---DDSTFLIVMENAEHQK------SQVWDSFLGKLCS------FTQCGKIIITTSSTEDFVEP---- 403 (1007)
Q Consensus 343 ~~~l~~~l~~~L---~~kr~LlVlDdv~~~~------~~~~~~l~~l~~~------~~~gs~IliTTR~~~~va~~---- 403 (1007)
.......+.+.+ .+++.+|+||+|+..- .+.+..++.+... ..+=+-|++.+.........
T Consensus 110 ~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~~~~~~~~~L~li~~~~t~~~~~~~~~~SP 189 (331)
T PF14516_consen 110 KISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQRKNNPIWQKLRLILAGSTEDYIILDINQSP 189 (331)
T ss_pred hhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHhcccCcccceEEEEEecCcccccccCCCCCC
Confidence 233344444433 2689999999997321 1233333311111 01111122222111101111
Q ss_pred cCCcceeeecCCCCHHHHHHHHHhhhccccccccCCChHHHHHHHHHHHHcCCCchHHHHHHHHhcCCCCC
Q 001843 404 LGAAFSTLHVPGLGKNESWELFLKKARIAEDVLQSRSSELIKLKKQILNICDGLPLRVVLLAGLLSTKQPS 474 (1007)
Q Consensus 404 ~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~g~~L~~~~~~ 474 (1007)
+.-. ..++|++++.+|...|..++...- . ....++|...+||+|.-+..++..+..+..+
T Consensus 190 FNIg-~~i~L~~Ft~~ev~~L~~~~~~~~-------~---~~~~~~l~~~tgGhP~Lv~~~~~~l~~~~~~ 249 (331)
T PF14516_consen 190 FNIG-QPIELPDFTPEEVQELAQRYGLEF-------S---QEQLEQLMDWTGGHPYLVQKACYLLVEEQIT 249 (331)
T ss_pred cccc-cceeCCCCCHHHHHHHHHhhhccC-------C---HHHHHHHHHHHCCCHHHHHHHHHHHHHccCc
Confidence 1111 689999999999999998874331 1 1228899999999999999999999876443
No 104
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=97.85 E-value=0.00038 Score=77.86 Aligned_cols=127 Identities=17% Similarity=0.275 Sum_probs=71.1
Q ss_pred EEEEEEcCCCChHHHHHHHHHhhhhcccCCCceEEEEecCCCCCCHHHHHHHHHHHHhhhhhhhccccCHHHHHHHHHHH
Q 001843 274 QVIALIGKAGSGKTTLARIVYNRVYVKRHFTKRAWVHIPIMSMVEDRDVLADILKQIDESLLKVEATLSAEELMWRITQA 353 (1007)
Q Consensus 274 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~l~~il~~l~~~~~~~~~~~~~~~l~~~l~~~ 353 (1007)
.++.++|.+|+||||+|+.+++. ... ....+..+ . .. .+.+++.+..+... ..
T Consensus 44 ~~lll~G~~G~GKT~la~~l~~~--~~~---~~~~i~~~--~-~~-~~~i~~~l~~~~~~------------------~~ 96 (316)
T PHA02544 44 NMLLHSPSPGTGKTTVAKALCNE--VGA---EVLFVNGS--D-CR-IDFVRNRLTRFAST------------------VS 96 (316)
T ss_pred eEEEeeCcCCCCHHHHHHHHHHH--hCc---cceEeccC--c-cc-HHHHHHHHHHHHHh------------------hc
Confidence 68888999999999999999983 322 22344444 3 11 22222222111111 00
Q ss_pred cCCCcEEEEEeCcCcc-CchhhhhhccccCCCCCCcEEEEEcCCCcccccccCCcceeeecCCCCHHHHHHHHHh
Q 001843 354 LDDSTFLIVMENAEHQ-KSQVWDSFLGKLCSFTQCGKIIITTSSTEDFVEPLGAAFSTLHVPGLGKNESWELFLK 427 (1007)
Q Consensus 354 L~~kr~LlVlDdv~~~-~~~~~~~l~~l~~~~~~gs~IliTTR~~~~va~~~~~~~~~~~l~~L~~~ea~~Lf~~ 427 (1007)
+.+.+-+||+|+++.. ..+....+..+......++++|+||.....+..........+.++..+.++..+++..
T Consensus 97 ~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~l~sR~~~i~~~~p~~~~~~~il~~ 171 (316)
T PHA02544 97 LTGGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLRSRCRVIDFGVPTKEEQIEMMKQ 171 (316)
T ss_pred ccCCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHHHHhhceEEEeCCCCHHHHHHHHHH
Confidence 1234568999999844 2223333333233225677888888755424333333336677777788877766543
No 105
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.85 E-value=0.00032 Score=80.22 Aligned_cols=156 Identities=15% Similarity=0.167 Sum_probs=87.9
Q ss_pred EEEEEEcCCCChHHHHHHHHHhhhhccc--------CCCceEEEEecCCCCCCHHHHHHHHHHHHhhhhhhhccccCHHH
Q 001843 274 QVIALIGKAGSGKTTLARIVYNRVYVKR--------HFTKRAWVHIPIMSMVEDRDVLADILKQIDESLLKVEATLSAEE 345 (1007)
Q Consensus 274 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~--------~F~~~~wv~~s~~~~~~~~~~l~~il~~l~~~~~~~~~~~~~~~ 345 (1007)
..+.++|+.|+||||+|+.+++. +.. .|+..+ +.+....... .+..++++.++...
T Consensus 40 ~~~L~~G~~G~GKt~~a~~la~~--l~~~~~~~~~~~~~~~~-~~l~~~~~~~-~~~i~~l~~~~~~~------------ 103 (367)
T PRK14970 40 QALLFCGPRGVGKTTCARILARK--INQPGYDDPNEDFSFNI-FELDAASNNS-VDDIRNLIDQVRIP------------ 103 (367)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH--hcCCCCCCCCCCCCcce-EEeccccCCC-HHHHHHHHHHHhhc------------
Confidence 68889999999999999999883 321 122211 1111001111 11222222222110
Q ss_pred HHHHHHHHcCCCcEEEEEeCcCccCchhhhhhc-cccCCCCCCcEEEEEcCCCcccccccCCcceeeecCCCCHHHHHHH
Q 001843 346 LMWRITQALDDSTFLIVMENAEHQKSQVWDSFL-GKLCSFTQCGKIIITTSSTEDFVEPLGAAFSTLHVPGLGKNESWEL 424 (1007)
Q Consensus 346 l~~~l~~~L~~kr~LlVlDdv~~~~~~~~~~l~-~l~~~~~~gs~IliTTR~~~~va~~~~~~~~~~~l~~L~~~ea~~L 424 (1007)
-..+++-++|+|+++......++.+. .+-.. ...+.+|++|.....+..........++++++++++....
T Consensus 104 -------p~~~~~kiviIDE~~~l~~~~~~~ll~~le~~-~~~~~~Il~~~~~~kl~~~l~sr~~~v~~~~~~~~~l~~~ 175 (367)
T PRK14970 104 -------PQTGKYKIYIIDEVHMLSSAAFNAFLKTLEEP-PAHAIFILATTEKHKIIPTILSRCQIFDFKRITIKDIKEH 175 (367)
T ss_pred -------cccCCcEEEEEeChhhcCHHHHHHHHHHHhCC-CCceEEEEEeCCcccCCHHHHhcceeEecCCccHHHHHHH
Confidence 11245558999999754555566666 34332 3345555555333225544443347899999999999888
Q ss_pred HHhhhccccccccCCChHHHHHHHHHHHHcCCCch
Q 001843 425 FLKKARIAEDVLQSRSSELIKLKKQILNICDGLPL 459 (1007)
Q Consensus 425 f~~~a~~~~~~~~~~~~~~~~~~~~I~~~c~GlPL 459 (1007)
+.+.+...+. . -..+.+..|++.++|.+-
T Consensus 176 l~~~~~~~g~---~---i~~~al~~l~~~~~gdlr 204 (367)
T PRK14970 176 LAGIAVKEGI---K---FEDDALHIIAQKADGALR 204 (367)
T ss_pred HHHHHHHcCC---C---CCHHHHHHHHHhCCCCHH
Confidence 8876654322 1 124567788888888554
No 106
>PTZ00202 tuzin; Provisional
Probab=97.85 E-value=0.00012 Score=81.38 Aligned_cols=166 Identities=16% Similarity=0.226 Sum_probs=100.4
Q ss_pred cCCccEEecchhHHHHHHhhcCCCCCCCccccccccccccccccccCCcccccCCCCCcCCCCCCCCchhhccccccccC
Q 001843 188 EDETDVLGLERQVKELLHVLIPEHHGINDADVSTKKIVDGYEYARSSGEEITELPIPEQEGGGDALSNEEEESGRCQSSS 267 (1007)
Q Consensus 188 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (1007)
.+..+|+||+.++..|...|...+.+ ..
T Consensus 259 a~~~~FVGReaEla~Lr~VL~~~d~~------------------------------------------------~p---- 286 (550)
T PTZ00202 259 AVIRQFVSREAEESWVRQVLRRLDTA------------------------------------------------HP---- 286 (550)
T ss_pred CCccCCCCcHHHHHHHHHHHhccCCC------------------------------------------------Cc----
Confidence 44568999999999999988643320 11
Q ss_pred CCCCCcEEEEEEcCCCChHHHHHHHHHhhhhcccCCCceEEEEecCCCCCCHHHHHHHHHHHHhhhhhhhccccCHHHHH
Q 001843 268 TTTTTTQVIALIGKAGSGKTTLARIVYNRVYVKRHFTKRAWVHIPIMSMVEDRDVLADILKQIDESLLKVEATLSAEELM 347 (1007)
Q Consensus 268 ~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~l~~il~~l~~~~~~~~~~~~~~~l~ 347 (1007)
+++.|.|++|.|||||++.+... .. + ..++. ......++++.++.+++.+ ......++.
T Consensus 287 ------rivvLtG~~G~GKTTLlR~~~~~--l~--~--~qL~v----Nprg~eElLr~LL~ALGV~-----p~~~k~dLL 345 (550)
T PTZ00202 287 ------RIVVFTGFRGCGKSSLCRSAVRK--EG--M--PAVFV----DVRGTEDTLRSVVKALGVP-----NVEACGDLL 345 (550)
T ss_pred ------eEEEEECCCCCCHHHHHHHHHhc--CC--c--eEEEE----CCCCHHHHHHHHHHHcCCC-----CcccHHHHH
Confidence 79999999999999999999973 22 2 12222 3337799999999999974 122223444
Q ss_pred HHHHHHc-----C-CCcEEEEEeCcCc-cCchhhhhhccccCCCCCCcEEEEEcCCCc-ccccccCCcceeeecCCCCHH
Q 001843 348 WRITQAL-----D-DSTFLIVMENAEH-QKSQVWDSFLGKLCSFTQCGKIIITTSSTE-DFVEPLGAAFSTLHVPGLGKN 419 (1007)
Q Consensus 348 ~~l~~~L-----~-~kr~LlVlDdv~~-~~~~~~~~l~~l~~~~~~gs~IliTTR~~~-~va~~~~~~~~~~~l~~L~~~ 419 (1007)
+.|.+.+ . +++.+||+-=-.- .-...+++...+-.. ..-|.|++----+. -.++..-+.-..|-+++++.+
T Consensus 346 rqIqeaLl~~~~e~GrtPVLII~lreg~~l~rvyne~v~la~d-rr~ch~v~evpleslt~~~~~lprldf~~vp~fsr~ 424 (550)
T PTZ00202 346 DFISEACRRAKKMNGETPLLVLKLREGSSLQRVYNEVVALACD-RRLCHVVIEVPLESLTIANTLLPRLDFYLVPNFSRS 424 (550)
T ss_pred HHHHHHHHHHHHhCCCCEEEEEEecCCCcHHHHHHHHHHHHcc-chhheeeeeehHhhcchhcccCccceeEecCCCCHH
Confidence 4444443 2 6677777653220 011223333344444 45567776332222 011111111167888999999
Q ss_pred HHHHHHHh
Q 001843 420 ESWELFLK 427 (1007)
Q Consensus 420 ea~~Lf~~ 427 (1007)
+|.+.-..
T Consensus 425 qaf~y~~h 432 (550)
T PTZ00202 425 QAFAYTQH 432 (550)
T ss_pred HHHHHHhh
Confidence 98876544
No 107
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.84 E-value=0.00022 Score=84.70 Aligned_cols=106 Identities=11% Similarity=0.066 Sum_probs=67.8
Q ss_pred CCcEEEEEeCcCccCchhhhhhc-cccCCCCCCcEEEEEcCCCcccccccCCcceeeecCCCCHHHHHHHHHhhhccccc
Q 001843 356 DSTFLIVMENAEHQKSQVWDSFL-GKLCSFTQCGKIIITTSSTEDFVEPLGAAFSTLHVPGLGKNESWELFLKKARIAED 434 (1007)
Q Consensus 356 ~kr~LlVlDdv~~~~~~~~~~l~-~l~~~~~~gs~IliTTR~~~~va~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~ 434 (1007)
+++-++|+|+++.-+....+.+. .+-.. .....+|++|.+...+.....+.+..+++.+++.++..+.+.+.+.....
T Consensus 117 ~~~KVvIIDEah~Lt~~A~NALLK~LEEp-p~~~~fIL~tte~~kll~TI~SRc~~~~F~~l~~~~i~~~L~~i~~~egi 195 (584)
T PRK14952 117 SRYRIFIVDEAHMVTTAGFNALLKIVEEP-PEHLIFIFATTEPEKVLPTIRSRTHHYPFRLLPPRTMRALIARICEQEGV 195 (584)
T ss_pred CCceEEEEECCCcCCHHHHHHHHHHHhcC-CCCeEEEEEeCChHhhHHHHHHhceEEEeeCCCHHHHHHHHHHHHHHcCC
Confidence 45568999999866777777777 44443 44555555444333266554544589999999999988888776543221
Q ss_pred cccCCChHHHHHHHHHHHHcCCCc-hHHHHHHHHh
Q 001843 435 VLQSRSSELIKLKKQILNICDGLP-LRVVLLAGLL 468 (1007)
Q Consensus 435 ~~~~~~~~~~~~~~~I~~~c~GlP-Lai~~~g~~L 468 (1007)
.-..+....|++.++|-+ -|+..+-.++
T Consensus 196 ------~i~~~al~~Ia~~s~GdlR~aln~Ldql~ 224 (584)
T PRK14952 196 ------VVDDAVYPLVIRAGGGSPRDTLSVLDQLL 224 (584)
T ss_pred ------CCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 112345677888888876 4555554443
No 108
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.82 E-value=0.00027 Score=83.74 Aligned_cols=108 Identities=10% Similarity=0.062 Sum_probs=70.7
Q ss_pred CCCcEEEEEeCcCccCchhhhhhc-cccCCCCCCcEEEEEcCCCcccccccCCcceeeecCCCCHHHHHHHHHhhhcccc
Q 001843 355 DDSTFLIVMENAEHQKSQVWDSFL-GKLCSFTQCGKIIITTSSTEDFVEPLGAAFSTLHVPGLGKNESWELFLKKARIAE 433 (1007)
Q Consensus 355 ~~kr~LlVlDdv~~~~~~~~~~l~-~l~~~~~~gs~IliTTR~~~~va~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~ 433 (1007)
.+++-+||+|+++.-+...++.|. .+-.. .....+|++|.+...+...+...+..+++++++.++..+.+...+....
T Consensus 117 ~g~~kVIIIDEad~Lt~~a~naLLk~LEEP-~~~~ifILaTt~~~kll~TI~SRcq~i~F~pLs~~eL~~~L~~il~~eg 195 (624)
T PRK14959 117 EGRYKVFIIDEAHMLTREAFNALLKTLEEP-PARVTFVLATTEPHKFPVTIVSRCQHFTFTRLSEAGLEAHLTKVLGREG 195 (624)
T ss_pred cCCceEEEEEChHhCCHHHHHHHHHHhhcc-CCCEEEEEecCChhhhhHHHHhhhhccccCCCCHHHHHHHHHHHHHHcC
Confidence 356679999999866666777777 44332 3345566655543325544444447899999999999988887665432
Q ss_pred ccccCCChHHHHHHHHHHHHcCCCc-hHHHHHHHHhc
Q 001843 434 DVLQSRSSELIKLKKQILNICDGLP-LRVVLLAGLLS 469 (1007)
Q Consensus 434 ~~~~~~~~~~~~~~~~I~~~c~GlP-Lai~~~g~~L~ 469 (1007)
. .-..+.+..|++.++|.+ -|+..+...+.
T Consensus 196 i------~id~eal~lIA~~s~GdlR~Al~lLeqll~ 226 (624)
T PRK14959 196 V------DYDPAAVRLIARRAAGSVRDSMSLLGQVLA 226 (624)
T ss_pred C------CCCHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 1 112456778889999854 77777765543
No 109
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=97.79 E-value=0.00038 Score=83.26 Aligned_cols=101 Identities=8% Similarity=-0.013 Sum_probs=66.5
Q ss_pred CCcEEEEEeCcCccCchhhhhhc-cccCCCCCCcEEEEEc-CCCcccccccCCcceeeecCCCCHHHHHHHHHhhhcccc
Q 001843 356 DSTFLIVMENAEHQKSQVWDSFL-GKLCSFTQCGKIIITT-SSTEDFVEPLGAAFSTLHVPGLGKNESWELFLKKARIAE 433 (1007)
Q Consensus 356 ~kr~LlVlDdv~~~~~~~~~~l~-~l~~~~~~gs~IliTT-R~~~~va~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~ 433 (1007)
+++-++|+|+++.-+....+.+. .+-+- ...+++|++| .... +.....+.+..+++.+++.++....+.+.+....
T Consensus 131 a~~KVvIIDEad~Ls~~a~naLLKtLEeP-p~~~~fIl~tte~~k-ll~tI~SRcq~~~f~~l~~~el~~~L~~i~~keg 208 (598)
T PRK09111 131 ARYKVYIIDEVHMLSTAAFNALLKTLEEP-PPHVKFIFATTEIRK-VPVTVLSRCQRFDLRRIEADVLAAHLSRIAAKEG 208 (598)
T ss_pred CCcEEEEEEChHhCCHHHHHHHHHHHHhC-CCCeEEEEEeCChhh-hhHHHHhheeEEEecCCCHHHHHHHHHHHHHHcC
Confidence 45568999999865666666666 44333 4456665544 4444 5544555558999999999999988888764332
Q ss_pred ccccCCChHHHHHHHHHHHHcCCCchHHHHH
Q 001843 434 DVLQSRSSELIKLKKQILNICDGLPLRVVLL 464 (1007)
Q Consensus 434 ~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~ 464 (1007)
. .-..+....|++.++|.+.-+...
T Consensus 209 i------~i~~eAl~lIa~~a~Gdlr~al~~ 233 (598)
T PRK09111 209 V------EVEDEALALIARAAEGSVRDGLSL 233 (598)
T ss_pred C------CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 2 112356788899999988655433
No 110
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.77 E-value=2e-05 Score=64.30 Aligned_cols=60 Identities=25% Similarity=0.303 Sum_probs=51.6
Q ss_pred CcceEEEEeccccCCCCchhhhhhhccccccCCCCcccEEEecCCCCCCcCCC-ccccCCCcCcEEecccCCC
Q 001843 635 WRLHSYLVFDSRIRGTPAKQIGIILGKCISKRRLGMLKVLDLEGVYKPMLTNN-NALGRLPFLEYLGLRSTFI 706 (1007)
Q Consensus 635 ~~LRsL~l~~~~~~~~~~~~i~~~l~~~~~~~~l~~Lr~L~Ls~~~l~~~~lp-~~i~~L~~Lr~L~L~~n~i 706 (1007)
++|++|.+.+|.+.. +.+..| .++++|++|++++|.+. .+| ..|..+++|++|++++|.|
T Consensus 1 p~L~~L~l~~n~l~~--------i~~~~f--~~l~~L~~L~l~~N~l~--~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTE--------IPPDSF--SNLPNLETLDLSNNNLT--SIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESE--------ECTTTT--TTGTTESEEEETSSSES--EEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCc--------cCHHHH--cCCCCCCEeEccCCccC--ccCHHHHcCCCCCCEEeCcCCcC
Confidence 478999999998753 555788 99999999999999998 665 5789999999999999975
No 111
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.77 E-value=8.8e-06 Score=84.43 Aligned_cols=177 Identities=18% Similarity=0.174 Sum_probs=101.0
Q ss_pred CCCCCeEEeeecC-CCchhhHHHHHHHhhcCCCCCeEEEeecCCCCCCcccc-cCCCCCcEEEecccC---CCCCcCccC
Q 001843 788 LTSLRKLGLKCSS-TTSTSLKKEIIGAVLQLSELHSLKLICETPSYLPLLEM-AEHYKLQKLYLSGHL---PPNSVIGDR 862 (1007)
Q Consensus 788 L~~L~~L~l~~~~-~~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l-~~~~~L~~L~L~g~~---~~lp~~~i~ 862 (1007)
.+.++.|++.++. +...++. ..+.+|+.|+.|+|++|.... ....+ .+..+|+.|.|.|.. ..... .+.
T Consensus 70 ~~~v~elDL~~N~iSdWseI~----~ile~lP~l~~LNls~N~L~s-~I~~lp~p~~nl~~lVLNgT~L~w~~~~s-~l~ 143 (418)
T KOG2982|consen 70 VTDVKELDLTGNLISDWSEIG----AILEQLPALTTLNLSCNSLSS-DIKSLPLPLKNLRVLVLNGTGLSWTQSTS-SLD 143 (418)
T ss_pred hhhhhhhhcccchhccHHHHH----HHHhcCccceEeeccCCcCCC-ccccCcccccceEEEEEcCCCCChhhhhh-hhh
Confidence 4778899999887 4444554 888999999999999987665 45555 356699999998854 33333 444
Q ss_pred CCCCCceEEEEEeeecCCC--CcCcccc-CCCCcEEEeecCCcCCCceee-cCCCCCCCcEEEeccCCCCcceEEcC--C
Q 001843 863 SFPPNVVTLTLSQLRLEYD--PMPILGR-LRQLKILRLFGGSYTGEEMSC-SSGEFPNLLVLKLWKLNRLRQWRIKE--G 936 (1007)
Q Consensus 863 ~~l~~L~~L~L~~~~l~~~--~~~~l~~-Lp~L~~L~L~~~~~~~~~l~~-~~~~fp~L~~L~L~~~~~L~~l~~~~--~ 936 (1007)
. +|.++.|.++.|.+... .-..... -|.++.|.+..|......-.. -..-||++..+.+..|| ++....+. .
T Consensus 144 ~-lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~P-lK~~s~ek~se 221 (418)
T KOG2982|consen 144 D-LPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGP-LKTESSEKGSE 221 (418)
T ss_pred c-chhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCc-ccchhhcccCC
Confidence 5 77888888888732111 0011111 123333333322110000000 01237777777777665 44443332 2
Q ss_pred CCccccEeEeeccCCCC---CCcCccccccCccEEEeccCC
Q 001843 937 AMPCLRQLEIRSCGYLV---PPTGLKHVTSSLREFLLTNMP 974 (1007)
Q Consensus 937 ~~p~L~~L~l~~c~~L~---lp~~l~~L~~~L~~L~l~~c~ 974 (1007)
.+|.+-.|++.. +++. --..+..+ +.|..|.+.+.|
T Consensus 222 ~~p~~~~LnL~~-~~idswasvD~Ln~f-~~l~dlRv~~~P 260 (418)
T KOG2982|consen 222 PFPSLSCLNLGA-NNIDSWASVDALNGF-PQLVDLRVSENP 260 (418)
T ss_pred CCCcchhhhhcc-cccccHHHHHHHcCC-chhheeeccCCc
Confidence 466666666665 3344 22245566 777777777766
No 112
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.76 E-value=2.7e-05 Score=58.47 Aligned_cols=40 Identities=30% Similarity=0.297 Sum_probs=35.3
Q ss_pred CcccEEEecCCCCCCcCCCccccCCCcCcEEecccCCCcccC
Q 001843 669 GMLKVLDLEGVYKPMLTNNNALGRLPFLEYLGLRSTFIDSLP 710 (1007)
Q Consensus 669 ~~Lr~L~Ls~~~l~~~~lp~~i~~L~~Lr~L~L~~n~i~~LP 710 (1007)
++|++|++++|++. .+|..+++|++|++|++++|.|+++|
T Consensus 1 ~~L~~L~l~~N~i~--~l~~~l~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSNNQIT--DLPPELSNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp TT-SEEEETSSS-S--SHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred CcceEEEccCCCCc--ccCchHhCCCCCCEEEecCCCCCCCc
Confidence 47999999999999 89988999999999999999999876
No 113
>PRK05642 DNA replication initiation factor; Validated
Probab=97.76 E-value=0.0002 Score=75.97 Aligned_cols=152 Identities=13% Similarity=0.187 Sum_probs=88.8
Q ss_pred EEEEEEcCCCChHHHHHHHHHhhhhcccCCCceEEEEecCCCCCCHHHHHHHHHHHHhhhhhhhccccCHHHHHHHHHHH
Q 001843 274 QVIALIGKAGSGKTTLARIVYNRVYVKRHFTKRAWVHIPIMSMVEDRDVLADILKQIDESLLKVEATLSAEELMWRITQA 353 (1007)
Q Consensus 274 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~l~~il~~l~~~~~~~~~~~~~~~l~~~l~~~ 353 (1007)
..+.|+|..|+|||.|++++++ .....-..++|++.. . +... . ..+.+.
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~--~~~~~~~~v~y~~~~--~------~~~~-----------------~----~~~~~~ 94 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACL--RFEQRGEPAVYLPLA--E------LLDR-----------------G----PELLDN 94 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHH--HHHhCCCcEEEeeHH--H------HHhh-----------------h----HHHHHh
Confidence 6789999999999999999998 333333456777654 1 1100 0 112222
Q ss_pred cCCCcEEEEEeCcCcc-Cchhhhh-hccccCC-CCCCcEEEEEcCCCcccc--------cccCCcceeeecCCCCHHHHH
Q 001843 354 LDDSTFLIVMENAEHQ-KSQVWDS-FLGKLCS-FTQCGKIIITTSSTEDFV--------EPLGAAFSTLHVPGLGKNESW 422 (1007)
Q Consensus 354 L~~kr~LlVlDdv~~~-~~~~~~~-l~~l~~~-~~~gs~IliTTR~~~~va--------~~~~~~~~~~~l~~L~~~ea~ 422 (1007)
+.+-. +||+||+... ....|.. +..+.+. ...|..||+|++....-. ..+... .++++++++.++-.
T Consensus 95 ~~~~d-~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~g-l~~~l~~~~~e~~~ 172 (234)
T PRK05642 95 LEQYE-LVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLA-LVFQMRGLSDEDKL 172 (234)
T ss_pred hhhCC-EEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcC-eeeecCCCCHHHHH
Confidence 32222 6889999632 2234544 2222221 134678999888643111 112222 67899999999999
Q ss_pred HHHHhhhccccccccCCChHHHHHHHHHHHHcCCCchHHHHH
Q 001843 423 ELFLKKARIAEDVLQSRSSELIKLKKQILNICDGLPLRVVLL 464 (1007)
Q Consensus 423 ~Lf~~~a~~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~ 464 (1007)
+++.+++....- ..+ ++...-|++++.|-.-.+..+
T Consensus 173 ~il~~ka~~~~~---~l~---~ev~~~L~~~~~~d~r~l~~~ 208 (234)
T PRK05642 173 RALQLRASRRGL---HLT---DEVGHFILTRGTRSMSALFDL 208 (234)
T ss_pred HHHHHHHHHcCC---CCC---HHHHHHHHHhcCCCHHHHHHH
Confidence 999866644321 112 466777777777765444433
No 114
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.74 E-value=0.00048 Score=83.17 Aligned_cols=102 Identities=8% Similarity=-0.011 Sum_probs=65.7
Q ss_pred CCcEEEEEeCcCccCchhhhhhc-cccCCCCCCcEEEEEcCCCcccccccCCcceeeecCCCCHHHHHHHHHhhhccccc
Q 001843 356 DSTFLIVMENAEHQKSQVWDSFL-GKLCSFTQCGKIIITTSSTEDFVEPLGAAFSTLHVPGLGKNESWELFLKKARIAED 434 (1007)
Q Consensus 356 ~kr~LlVlDdv~~~~~~~~~~l~-~l~~~~~~gs~IliTTR~~~~va~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~ 434 (1007)
+++-++|+|+++.-+.+..+.+. .+-.. ...+.+|++|.+...+.......+..+.+++++.++....+.+.+.....
T Consensus 119 ~~~kVvIIDEa~~L~~~a~naLLk~LEep-p~~tv~Il~t~~~~kll~tI~SR~~~i~f~~l~~~el~~~L~~~a~~egl 197 (585)
T PRK14950 119 ARYKVYIIDEVHMLSTAAFNALLKTLEEP-PPHAIFILATTEVHKVPATILSRCQRFDFHRHSVADMAAHLRKIAAAEGI 197 (585)
T ss_pred CCeEEEEEeChHhCCHHHHHHHHHHHhcC-CCCeEEEEEeCChhhhhHHHHhccceeeCCCCCHHHHHHHHHHHHHHcCC
Confidence 45668999999755556666666 44333 44556666554433254444444478899999999988888877654322
Q ss_pred cccCCChHHHHHHHHHHHHcCCCchHHHHH
Q 001843 435 VLQSRSSELIKLKKQILNICDGLPLRVVLL 464 (1007)
Q Consensus 435 ~~~~~~~~~~~~~~~I~~~c~GlPLai~~~ 464 (1007)
. -..+.+..|++.++|.+-.+...
T Consensus 198 ---~---i~~eal~~La~~s~Gdlr~al~~ 221 (585)
T PRK14950 198 ---N---LEPGALEAIARAATGSMRDAENL 221 (585)
T ss_pred ---C---CCHHHHHHHHHHcCCCHHHHHHH
Confidence 1 12356788999999988644433
No 115
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=97.74 E-value=0.00083 Score=75.66 Aligned_cols=267 Identities=15% Similarity=0.210 Sum_probs=145.1
Q ss_pred EEEEEcCCCChHHHHHHHHHhhhhcccCCCc--eEEEEecCCCCCCHHHHHHHHHHHHhhhhhhhccccCHHHHHHHHHH
Q 001843 275 VIALIGKAGSGKTTLARIVYNRVYVKRHFTK--RAWVHIPIMSMVEDRDVLADILKQIDESLLKVEATLSAEELMWRITQ 352 (1007)
Q Consensus 275 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~--~~wv~~s~~~~~~~~~~l~~il~~l~~~~~~~~~~~~~~~l~~~l~~ 352 (1007)
-+.|+|.+|+|||+.++.|.. ++...... +++|.+- ...+..+++.+|+.+++.. ........+..+.+.+
T Consensus 44 n~~iyG~~GTGKT~~~~~v~~--~l~~~~~~~~~~yINc~--~~~t~~~i~~~i~~~~~~~---p~~g~~~~~~~~~l~~ 116 (366)
T COG1474 44 NIIIYGPTGTGKTATVKFVME--ELEESSANVEVVYINCL--ELRTPYQVLSKILNKLGKV---PLTGDSSLEILKRLYD 116 (366)
T ss_pred cEEEECCCCCCHhHHHHHHHH--HHHhhhccCceEEEeee--eCCCHHHHHHHHHHHcCCC---CCCCCchHHHHHHHHH
Confidence 388999999999999999999 55544322 5677666 8999999999999999732 2245566777777777
Q ss_pred HcC--CCcEEEEEeCcCccCch---hhhhhccccCCCCCCcEEEE--EcCCCc-------ccccccCCcceeeecCCCCH
Q 001843 353 ALD--DSTFLIVMENAEHQKSQ---VWDSFLGKLCSFTQCGKIII--TTSSTE-------DFVEPLGAAFSTLHVPGLGK 418 (1007)
Q Consensus 353 ~L~--~kr~LlVlDdv~~~~~~---~~~~l~~l~~~~~~gs~Ili--TTR~~~-------~va~~~~~~~~~~~l~~L~~ 418 (1007)
.+. ++.++||||+++.-... ..-.+...+.. . .++|+| .+-+.. +|-...+. ..+..+|-+.
T Consensus 117 ~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~-~-~~~v~vi~i~n~~~~~~~ld~rv~s~l~~--~~I~F~pY~a 192 (366)
T COG1474 117 NLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGE-N-KVKVSIIAVSNDDKFLDYLDPRVKSSLGP--SEIVFPPYTA 192 (366)
T ss_pred HHHhcCCeEEEEEcchhhhccccchHHHHHHhhccc-c-ceeEEEEEEeccHHHHHHhhhhhhhccCc--ceeeeCCCCH
Confidence 775 57889999999732111 11122222222 1 344443 232221 02222223 4478889999
Q ss_pred HHHHHHHHhhhccccccccCCChHHHHHHHHHHHHcC-CCchHHHHHHH--HhcCCCC----ChHHHHHHHHHcccchhh
Q 001843 419 NESWELFLKKARIAEDVLQSRSSELIKLKKQILNICD-GLPLRVVLLAG--LLSTKQP----SYEEWSKVIERANGDNLV 491 (1007)
Q Consensus 419 ~ea~~Lf~~~a~~~~~~~~~~~~~~~~~~~~I~~~c~-GlPLai~~~g~--~L~~~~~----~~~~w~~~l~~l~i~~~l 491 (1007)
+|-.+.+...+-..-.+ ....+..-+++..++..-+ -.=.||.++-. .++.+.. +...-..+.... -....
T Consensus 193 ~el~~Il~~R~~~~~~~-~~~~~~vl~lia~~~a~~~GDAR~aidilr~A~eiAe~~~~~~v~~~~v~~a~~~~-~~~~~ 270 (366)
T COG1474 193 EELYDILRERVEEGFSA-GVIDDDVLKLIAALVAAESGDARKAIDILRRAGEIAEREGSRKVSEDHVREAQEEI-ERDVL 270 (366)
T ss_pred HHHHHHHHHHHHhhccC-CCcCccHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHhhCCCCcCHHHHHHHHHHh-hHHHH
Confidence 99999888776533221 1223333344444444444 44455555433 3332111 222222222211 12223
Q ss_pred hhhhcCCccCchhhhhhhccCCCCcccchhHH--HHHHHhcccCCCCCCccCCHHHHHHHHHHHHHhccceEEEe
Q 001843 492 ALCYQDLPAQVKPCILYMGLFPREYEIPVRRL--IHLWCAEGFAPPDLDLIASEEDLAEMYLEELVTRHMIQVIR 564 (1007)
Q Consensus 492 ~~sy~~L~~~~k~cfl~la~fp~~~~i~~~~L--i~~Wiaeg~i~~~~~~~~~~e~~~~~~l~~Lv~rsll~~~~ 564 (1007)
.-....||.+.|-.+.-....- ..+....+ ...++++.+- . .+..-..++++|...+++....
T Consensus 271 ~~~~~~L~~~~ki~L~~i~~~~--~~~~~~~~y~~y~~~~~~~~-------~-~~~~~~~ii~~L~~lgiv~~~~ 335 (366)
T COG1474 271 EEVLKTLPLHQKIVLLAIVELT--VEISTGELYDVYESLCERLR-------T-SQRRFSDIISELEGLGIVSASL 335 (366)
T ss_pred HHHHHcCCHhHHHHHHHHHHhc--CCCChHHHHHHHHHHHhhhC-------c-hHHHHHHHHHHHHhcCeEEeee
Confidence 3336778877665544333221 12222222 2233333222 1 2333446777788888876543
No 116
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=97.73 E-value=0.00034 Score=81.35 Aligned_cols=168 Identities=9% Similarity=0.166 Sum_probs=99.4
Q ss_pred EEEEEEcCCCChHHHHHHHHHhhhhcccCCC--ceEEEEecCCCCCCHHHHHHHHHHHHhhhhhhhccccCHHHHHHHHH
Q 001843 274 QVIALIGKAGSGKTTLARIVYNRVYVKRHFT--KRAWVHIPIMSMVEDRDVLADILKQIDESLLKVEATLSAEELMWRIT 351 (1007)
Q Consensus 274 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~--~~~wv~~s~~~~~~~~~~l~~il~~l~~~~~~~~~~~~~~~l~~~l~ 351 (1007)
.-+.|+|..|+|||+|++++++ .+..... .+++++. .++...+...+... ......++
T Consensus 142 npl~i~G~~G~GKTHLl~Ai~~--~l~~~~~~~~v~yv~~--------~~f~~~~~~~l~~~----------~~~~~~~~ 201 (450)
T PRK14087 142 NPLFIYGESGMGKTHLLKAAKN--YIESNFSDLKVSYMSG--------DEFARKAVDILQKT----------HKEIEQFK 201 (450)
T ss_pred CceEEECCCCCcHHHHHHHHHH--HHHHhCCCCeEEEEEH--------HHHHHHHHHHHHHh----------hhHHHHHH
Confidence 4588999999999999999999 4433222 2344433 35556665555432 01123344
Q ss_pred HHcCCCcEEEEEeCcCccCc-hhh-hhhccccC-CCCCCcEEEEEcCCCc--------ccccccCCcceeeecCCCCHHH
Q 001843 352 QALDDSTFLIVMENAEHQKS-QVW-DSFLGKLC-SFTQCGKIIITTSSTE--------DFVEPLGAAFSTLHVPGLGKNE 420 (1007)
Q Consensus 352 ~~L~~kr~LlVlDdv~~~~~-~~~-~~l~~l~~-~~~~gs~IliTTR~~~--------~va~~~~~~~~~~~l~~L~~~e 420 (1007)
+.++ +.-+||+||+..... ..| +.+..+.+ ....|..||+|+.... ++...+... -++.+++++.++
T Consensus 202 ~~~~-~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~G-l~~~L~~pd~e~ 279 (450)
T PRK14087 202 NEIC-QNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMG-LSIAIQKLDNKT 279 (450)
T ss_pred HHhc-cCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhCC-ceeccCCcCHHH
Confidence 4444 334888999974322 222 33331111 1133557888876532 122233333 678899999999
Q ss_pred HHHHHHhhhccccccccCCChHHHHHHHHHHHHcCCCchHHHHHHHH
Q 001843 421 SWELFLKKARIAEDVLQSRSSELIKLKKQILNICDGLPLRVVLLAGL 467 (1007)
Q Consensus 421 a~~Lf~~~a~~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~g~~ 467 (1007)
-.+++.+++-.... . ..-.++...-|++.++|.|=.+.-+...
T Consensus 280 r~~iL~~~~~~~gl---~-~~l~~evl~~Ia~~~~gd~R~L~gaL~~ 322 (450)
T PRK14087 280 ATAIIKKEIKNQNI---K-QEVTEEAINFISNYYSDDVRKIKGSVSR 322 (450)
T ss_pred HHHHHHHHHHhcCC---C-CCCCHHHHHHHHHccCCCHHHHHHHHHH
Confidence 99999988754221 0 0122567788999999988766555433
No 117
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=97.73 E-value=8.7e-05 Score=82.61 Aligned_cols=91 Identities=13% Similarity=0.114 Sum_probs=61.8
Q ss_pred EEEEEEcCCCChHHHHHHHHHhhhhcccCCCceEEEEecCCCCCCHHHHHHHHHHHHhhhhhhhcccc-CH----HHHHH
Q 001843 274 QVIALIGKAGSGKTTLARIVYNRVYVKRHFTKRAWVHIPIMSMVEDRDVLADILKQIDESLLKVEATL-SA----EELMW 348 (1007)
Q Consensus 274 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~l~~il~~l~~~~~~~~~~~-~~----~~l~~ 348 (1007)
+.++|+|.+|.|||||++.+++.... .+|+..+||.+...+..+..++++.++..+-.. ..+... .. ....+
T Consensus 169 q~~~IvG~~g~GKTtL~~~i~~~I~~-nhfdv~v~VlLIgER~~EVtDLqrsIlg~Vvas--t~d~p~~~~~~va~~v~e 245 (415)
T TIGR00767 169 QRGLIVAPPKAGKTVLLQKIAQAITR-NHPEVELIVLLIDERPEEVTDMQRSVKGEVVAS--TFDEPASRHVQVAEMVIE 245 (415)
T ss_pred CEEEEECCCCCChhHHHHHHHHhhcc-cCCceEEEEEEcCCCCccHHHHHHHhhceEEEe--cCCCChHHHHHHHHHHHH
Confidence 78999999999999999999995332 369999999988334489999999986544332 111111 10 11111
Q ss_pred HHHHH-cCCCcEEEEEeCcC
Q 001843 349 RITQA-LDDSTFLIVMENAE 367 (1007)
Q Consensus 349 ~l~~~-L~~kr~LlVlDdv~ 367 (1007)
..... -.+++.+|++|.+.
T Consensus 246 ~Ae~~~~~GkdVVLlIDEit 265 (415)
T TIGR00767 246 KAKRLVEHKKDVVILLDSIT 265 (415)
T ss_pred HHHHHHHcCCCeEEEEEChh
Confidence 11121 35899999999996
No 118
>PLN03150 hypothetical protein; Provisional
Probab=97.72 E-value=3.2e-05 Score=94.16 Aligned_cols=89 Identities=22% Similarity=0.204 Sum_probs=75.7
Q ss_pred cccEEEecCCCCCCcCCCccccCCCcCcEEecccCCCc-ccCcccccCCCCCEEeecCCccc-ccccccccc---ceecc
Q 001843 670 MLKVLDLEGVYKPMLTNNNALGRLPFLEYLGLRSTFID-SLPDSTPILFCLATLDVSHTKVQ-RLPYAFWPS---RHLYL 744 (1007)
Q Consensus 670 ~Lr~L~Ls~~~l~~~~lp~~i~~L~~Lr~L~L~~n~i~-~LP~~i~~L~~L~~L~L~~~~l~-~lP~~i~~L---r~L~l 744 (1007)
.++.|+|++|.+.+ .+|..|++|.+|++|+|++|.+. .+|..+++|++|++|+|++|.+. .+|..+++| ++|++
T Consensus 419 ~v~~L~L~~n~L~g-~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~L 497 (623)
T PLN03150 419 FIDGLGLDNQGLRG-FIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNL 497 (623)
T ss_pred EEEEEECCCCCccc-cCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEEC
Confidence 48899999999886 78999999999999999999997 89999999999999999999887 677766655 88888
Q ss_pred cccccccccccccccccC
Q 001843 745 NWIFLATNVFRHPQFVKW 762 (1007)
Q Consensus 745 ~~~~~~~~~~~~p~~i~~ 762 (1007)
+ +|.....+|..++.
T Consensus 498 s---~N~l~g~iP~~l~~ 512 (623)
T PLN03150 498 N---GNSLSGRVPAALGG 512 (623)
T ss_pred c---CCcccccCChHHhh
Confidence 8 66666677776654
No 119
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=97.71 E-value=0.00067 Score=81.67 Aligned_cols=103 Identities=8% Similarity=0.025 Sum_probs=65.0
Q ss_pred CCcEEEEEeCcCccCchhhhhhc-cccCCCCCCcEEEEEcCCCcccccccCCcceeeecCCCCHHHHHHHHHhhhccccc
Q 001843 356 DSTFLIVMENAEHQKSQVWDSFL-GKLCSFTQCGKIIITTSSTEDFVEPLGAAFSTLHVPGLGKNESWELFLKKARIAED 434 (1007)
Q Consensus 356 ~kr~LlVlDdv~~~~~~~~~~l~-~l~~~~~~gs~IliTTR~~~~va~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~ 434 (1007)
+++-++|+|+++.-....++.+. .+-.. ...+.+|++|.....+.......+..+++.+++.++..+.+...+...+.
T Consensus 117 g~~KV~IIDEa~~LT~~A~NALLKtLEEP-P~~tifILaTte~~KLl~TI~SRcq~ieF~~L~~eeI~~~L~~il~kegI 195 (725)
T PRK07133 117 SKYKIYIIDEVHMLSKSAFNALLKTLEEP-PKHVIFILATTEVHKIPLTILSRVQRFNFRRISEDEIVSRLEFILEKENI 195 (725)
T ss_pred CCCEEEEEEChhhCCHHHHHHHHHHhhcC-CCceEEEEEcCChhhhhHHHHhhceeEEccCCCHHHHHHHHHHHHHHcCC
Confidence 56669999999866666777777 43332 33445444443333265554544589999999999998888775433221
Q ss_pred cccCCChHHHHHHHHHHHHcCCCc-hHHHHHH
Q 001843 435 VLQSRSSELIKLKKQILNICDGLP-LRVVLLA 465 (1007)
Q Consensus 435 ~~~~~~~~~~~~~~~I~~~c~GlP-Lai~~~g 465 (1007)
....+.+..|++.++|-+ .|+..+-
T Consensus 196 ------~id~eAl~~LA~lS~GslR~AlslLe 221 (725)
T PRK07133 196 ------SYEKNALKLIAKLSSGSLRDALSIAE 221 (725)
T ss_pred ------CCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 111345778899998866 4444443
No 120
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=97.71 E-value=0.00059 Score=79.43 Aligned_cols=103 Identities=10% Similarity=0.058 Sum_probs=64.8
Q ss_pred CCcEEEEEeCcCccCchhhhhhc-cccCCCCCCcEEEEEcCCCcccccccCCcceeeecCCCCHHHHHHHHHhhhccccc
Q 001843 356 DSTFLIVMENAEHQKSQVWDSFL-GKLCSFTQCGKIIITTSSTEDFVEPLGAAFSTLHVPGLGKNESWELFLKKARIAED 434 (1007)
Q Consensus 356 ~kr~LlVlDdv~~~~~~~~~~l~-~l~~~~~~gs~IliTTR~~~~va~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~ 434 (1007)
+++-++|+|+++.......+.+. .+-+. .....+|++|.+...+.......+..++++++++++....+.+.+.....
T Consensus 120 ~~~kvvIIdead~lt~~~~n~LLk~lEep-~~~~~~Il~t~~~~kl~~tI~sRc~~v~f~~l~~~el~~~L~~~~~~eg~ 198 (451)
T PRK06305 120 SRYKIYIIDEVHMLTKEAFNSLLKTLEEP-PQHVKFFLATTEIHKIPGTILSRCQKMHLKRIPEETIIDKLALIAKQEGI 198 (451)
T ss_pred CCCEEEEEecHHhhCHHHHHHHHHHhhcC-CCCceEEEEeCChHhcchHHHHhceEEeCCCCCHHHHHHHHHHHHHHcCC
Confidence 56678999999755555556665 44333 34556666554333255544444488999999999988888776543221
Q ss_pred cccCCChHHHHHHHHHHHHcCCCc-hHHHHHH
Q 001843 435 VLQSRSSELIKLKKQILNICDGLP-LRVVLLA 465 (1007)
Q Consensus 435 ~~~~~~~~~~~~~~~I~~~c~GlP-Lai~~~g 465 (1007)
.-..+.+..|++.++|.+ .|+..+-
T Consensus 199 ------~i~~~al~~L~~~s~gdlr~a~~~Le 224 (451)
T PRK06305 199 ------ETSREALLPIARAAQGSLRDAESLYD 224 (451)
T ss_pred ------CCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 112457788999999865 4444443
No 121
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.71 E-value=4.7e-06 Score=96.79 Aligned_cols=77 Identities=25% Similarity=0.200 Sum_probs=57.5
Q ss_pred CCCCcccEEEecCCCCCCcCCCccccCCCcCcEEecccCCCcccCcccccCCCCCEEeecCCcccccccc--ccccceec
Q 001843 666 RRLGMLKVLDLEGVYKPMLTNNNALGRLPFLEYLGLRSTFIDSLPDSTPILFCLATLDVSHTKVQRLPYA--FWPSRHLY 743 (1007)
Q Consensus 666 ~~l~~Lr~L~Ls~~~l~~~~lp~~i~~L~~Lr~L~L~~n~i~~LP~~i~~L~~L~~L~L~~~~l~~lP~~--i~~Lr~L~ 743 (1007)
..++.|..|++.+|.+. .+...+..+.+|++|+|++|.|+.+. .+..|..|+.|++.+|.|..++.. +..|+.|+
T Consensus 92 ~~~~~l~~l~l~~n~i~--~i~~~l~~~~~L~~L~ls~N~I~~i~-~l~~l~~L~~L~l~~N~i~~~~~~~~l~~L~~l~ 168 (414)
T KOG0531|consen 92 SKLKSLEALDLYDNKIE--KIENLLSSLVNLQVLDLSFNKITKLE-GLSTLTLLKELNLSGNLISDISGLESLKSLKLLD 168 (414)
T ss_pred ccccceeeeeccccchh--hcccchhhhhcchheecccccccccc-chhhccchhhheeccCcchhccCCccchhhhccc
Confidence 77888888888888887 66554778888888888888888886 677788888888888877766542 34445555
Q ss_pred cc
Q 001843 744 LN 745 (1007)
Q Consensus 744 l~ 745 (1007)
++
T Consensus 169 l~ 170 (414)
T KOG0531|consen 169 LS 170 (414)
T ss_pred CC
Confidence 54
No 122
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.69 E-value=1.3e-05 Score=97.06 Aligned_cols=157 Identities=22% Similarity=0.186 Sum_probs=80.3
Q ss_pred CcccEEEecCCCCCCcCCCcccc-CCCcCcEEecccCCCc--ccCcccccCCCCCEEeecCCccccccccccccceeccc
Q 001843 669 GMLKVLDLEGVYKPMLTNNNALG-RLPFLEYLGLRSTFID--SLPDSTPILFCLATLDVSHTKVQRLPYAFWPSRHLYLN 745 (1007)
Q Consensus 669 ~~Lr~L~Ls~~~l~~~~lp~~i~-~L~~Lr~L~L~~n~i~--~LP~~i~~L~~L~~L~L~~~~l~~lP~~i~~Lr~L~l~ 745 (1007)
.+|+.||++|.......-|..++ -|+.|+.|.+.+-.+. ++-.-..+++||..||+++++++.+
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl------------- 188 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL------------- 188 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-------------
Confidence 35666666665433222333443 3556666666553332 2222234555666666666554432
Q ss_pred ccccccccccccccccCcCCCccccceeeCCCcccChHhhhcCCCCCeEEeeecC-CCchhhHHHHHHHhhcCCCCCeEE
Q 001843 746 WIFLATNVFRHPQFVKWETSLQTLWGLCIKADEVQSLDYFRRLTSLRKLGLKCSS-TTSTSLKKEIIGAVLQLSELHSLK 824 (1007)
Q Consensus 746 ~~~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~-~~~~~l~~~~~~~l~~l~~L~~L~ 824 (1007)
.++++|++|++|...+....+...+.++-.|++|+.|+|+... .....+.....+.-..+++|+.|+
T Consensus 189 ------------~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLD 256 (699)
T KOG3665|consen 189 ------------SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLD 256 (699)
T ss_pred ------------HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEe
Confidence 3456666666665444444433456667777778888877655 222223333334445567777777
Q ss_pred EeecCCCCCCccc-ccCCCCCcEEEec
Q 001843 825 LICETPSYLPLLE-MAEHYKLQKLYLS 850 (1007)
Q Consensus 825 L~~~~~~~~~~~~-l~~~~~L~~L~L~ 850 (1007)
.++.......++. +..+|+|+.+.+-
T Consensus 257 cSgTdi~~~~le~ll~sH~~L~~i~~~ 283 (699)
T KOG3665|consen 257 CSGTDINEEILEELLNSHPNLQQIAAL 283 (699)
T ss_pred cCCcchhHHHHHHHHHhCccHhhhhhh
Confidence 7764433222222 2335555555443
No 123
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=97.69 E-value=0.00082 Score=74.74 Aligned_cols=98 Identities=13% Similarity=0.210 Sum_probs=68.8
Q ss_pred CCcEEEEEeCcCccCchhhhhhc-cccCCCCCCcEEEEEcCCCcccccccCCcceeeecCCCCHHHHHHHHHhhhccccc
Q 001843 356 DSTFLIVMENAEHQKSQVWDSFL-GKLCSFTQCGKIIITTSSTEDFVEPLGAAFSTLHVPGLGKNESWELFLKKARIAED 434 (1007)
Q Consensus 356 ~kr~LlVlDdv~~~~~~~~~~l~-~l~~~~~~gs~IliTTR~~~~va~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~ 434 (1007)
+++-++|+|+++.-+....+.+. .+-.. ..++.+|+||.+...+.....+.+..+.+.+++.+++.+.+...... .
T Consensus 105 ~~~kv~iI~~a~~m~~~aaNaLLK~LEEP-p~~~~fiL~t~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~L~~~~~~-~- 181 (328)
T PRK05707 105 GGRKVVLIEPAEAMNRNAANALLKSLEEP-SGDTVLLLISHQPSRLLPTIKSRCQQQACPLPSNEESLQWLQQALPE-S- 181 (328)
T ss_pred CCCeEEEECChhhCCHHHHHHHHHHHhCC-CCCeEEEEEECChhhCcHHHHhhceeeeCCCcCHHHHHHHHHHhccc-C-
Confidence 34445577999877777788777 44333 45677778887776466666666689999999999999888765311 1
Q ss_pred cccCCChHHHHHHHHHHHHcCCCchHHHHH
Q 001843 435 VLQSRSSELIKLKKQILNICDGLPLRVVLL 464 (1007)
Q Consensus 435 ~~~~~~~~~~~~~~~I~~~c~GlPLai~~~ 464 (1007)
. .+.+..++..++|.|+....+
T Consensus 182 -----~---~~~~~~~l~la~Gsp~~A~~l 203 (328)
T PRK05707 182 -----D---ERERIELLTLAGGSPLRALQL 203 (328)
T ss_pred -----C---hHHHHHHHHHcCCCHHHHHHH
Confidence 1 234567788999999765544
No 124
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=97.69 E-value=0.00032 Score=73.53 Aligned_cols=155 Identities=12% Similarity=0.153 Sum_probs=85.9
Q ss_pred EEEEEEcCCCChHHHHHHHHHhhhhcccCCC--ceEEEEecCCCCCCHHHHHHHHHHHHhhhhhhhccccCHHHHHHHHH
Q 001843 274 QVIALIGKAGSGKTTLARIVYNRVYVKRHFT--KRAWVHIPIMSMVEDRDVLADILKQIDESLLKVEATLSAEELMWRIT 351 (1007)
Q Consensus 274 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~--~~~wv~~s~~~~~~~~~~l~~il~~l~~~~~~~~~~~~~~~l~~~l~ 351 (1007)
..+.|+|..|+|||.|.+++++ ...+..+ .+++++.. +....+...+... .. ..++
T Consensus 35 ~~l~l~G~~G~GKTHLL~Ai~~--~~~~~~~~~~v~y~~~~--------~f~~~~~~~~~~~--------~~----~~~~ 92 (219)
T PF00308_consen 35 NPLFLYGPSGLGKTHLLQAIAN--EAQKQHPGKRVVYLSAE--------EFIREFADALRDG--------EI----EEFK 92 (219)
T ss_dssp SEEEEEESTTSSHHHHHHHHHH--HHHHHCTTS-EEEEEHH--------HHHHHHHHHHHTT--------SH----HHHH
T ss_pred CceEEECCCCCCHHHHHHHHHH--HHHhccccccceeecHH--------HHHHHHHHHHHcc--------cc----hhhh
Confidence 5678999999999999999999 4444332 35565543 4444444444322 12 2233
Q ss_pred HHcCCCcEEEEEeCcCccCc-hhhhhhc-cccCC-CCCCcEEEEEcCCCcccc--------cccCCcceeeecCCCCHHH
Q 001843 352 QALDDSTFLIVMENAEHQKS-QVWDSFL-GKLCS-FTQCGKIIITTSSTEDFV--------EPLGAAFSTLHVPGLGKNE 420 (1007)
Q Consensus 352 ~~L~~kr~LlVlDdv~~~~~-~~~~~l~-~l~~~-~~~gs~IliTTR~~~~va--------~~~~~~~~~~~l~~L~~~e 420 (1007)
+.++ .-=+|++||++.-.. ..|.... .+.+. ...|-+||+|++....-. ..+... -++++++++.++
T Consensus 93 ~~~~-~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~SRl~~G-l~~~l~~pd~~~ 170 (219)
T PF00308_consen 93 DRLR-SADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRSRLSWG-LVVELQPPDDED 170 (219)
T ss_dssp HHHC-TSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHHHHHCS-EEEEE----HHH
T ss_pred hhhh-cCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhhhHhhc-chhhcCCCCHHH
Confidence 4444 233889999974322 2333322 22211 134668999996543111 112222 789999999999
Q ss_pred HHHHHHhhhccccccccCCChHHHHHHHHHHHHcCCCc
Q 001843 421 SWELFLKKARIAEDVLQSRSSELIKLKKQILNICDGLP 458 (1007)
Q Consensus 421 a~~Lf~~~a~~~~~~~~~~~~~~~~~~~~I~~~c~GlP 458 (1007)
-.+++.+.+....- .--++++.-|++.+.+..
T Consensus 171 r~~il~~~a~~~~~------~l~~~v~~~l~~~~~~~~ 202 (219)
T PF00308_consen 171 RRRILQKKAKERGI------ELPEEVIEYLARRFRRDV 202 (219)
T ss_dssp HHHHHHHHHHHTT--------S-HHHHHHHHHHTTSSH
T ss_pred HHHHHHHHHHHhCC------CCcHHHHHHHHHhhcCCH
Confidence 99999988765332 122455566666655443
No 125
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.68 E-value=0.00053 Score=82.62 Aligned_cols=98 Identities=9% Similarity=0.046 Sum_probs=65.5
Q ss_pred CCcEEEEEeCcCccCchhhhhhc-cccCCCCCCcEEEE-EcCCCcccccccCCcceeeecCCCCHHHHHHHHHhhhcccc
Q 001843 356 DSTFLIVMENAEHQKSQVWDSFL-GKLCSFTQCGKIII-TTSSTEDFVEPLGAAFSTLHVPGLGKNESWELFLKKARIAE 433 (1007)
Q Consensus 356 ~kr~LlVlDdv~~~~~~~~~~l~-~l~~~~~~gs~Ili-TTR~~~~va~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~ 433 (1007)
+++=++|+|+++.-+...++.+. .+-.- ...+.+|+ ||+... +.......+.++++.++++++....+.+.+...+
T Consensus 120 ~~~KVvIIdea~~Ls~~a~naLLK~LEep-p~~tifIL~tt~~~k-Il~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~eg 197 (614)
T PRK14971 120 GKYKIYIIDEVHMLSQAAFNAFLKTLEEP-PSYAIFILATTEKHK-ILPTILSRCQIFDFNRIQVADIVNHLQYVASKEG 197 (614)
T ss_pred CCcEEEEEECcccCCHHHHHHHHHHHhCC-CCCeEEEEEeCCchh-chHHHHhhhheeecCCCCHHHHHHHHHHHHHHcC
Confidence 44558899999866667777777 44333 44555555 544444 7666565568999999999999888877654432
Q ss_pred ccccCCChHHHHHHHHHHHHcCCCchHH
Q 001843 434 DVLQSRSSELIKLKKQILNICDGLPLRV 461 (1007)
Q Consensus 434 ~~~~~~~~~~~~~~~~I~~~c~GlPLai 461 (1007)
. ....+.+..|++.++|-.--+
T Consensus 198 i------~i~~~al~~La~~s~gdlr~a 219 (614)
T PRK14971 198 I------TAEPEALNVIAQKADGGMRDA 219 (614)
T ss_pred C------CCCHHHHHHHHHHcCCCHHHH
Confidence 2 112356788889998866433
No 126
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.68 E-value=1.5e-06 Score=94.24 Aligned_cols=302 Identities=20% Similarity=0.133 Sum_probs=150.1
Q ss_pred CcceEEEEeccccCCCCchhhhhhhccccccCCCCcccEEEecCCCCCCcCCCccc-cCCCcCcEEeccc-CCCccc--C
Q 001843 635 WRLHSYLVFDSRIRGTPAKQIGIILGKCISKRRLGMLKVLDLEGVYKPMLTNNNAL-GRLPFLEYLGLRS-TFIDSL--P 710 (1007)
Q Consensus 635 ~~LRsL~l~~~~~~~~~~~~i~~~l~~~~~~~~l~~Lr~L~Ls~~~l~~~~lp~~i-~~L~~Lr~L~L~~-n~i~~L--P 710 (1007)
..||.|.+.|+...... .+..+- .+++++..|.+.+|....+..-.++ ..+..|++|+|.. ..|+.. -
T Consensus 138 g~lk~LSlrG~r~v~~s------slrt~~--~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk 209 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDS------SLRTFA--SNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLK 209 (483)
T ss_pred cccccccccccccCCcc------hhhHHh--hhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHH
Confidence 35666666666542211 334444 7888888888888763211222222 4677888888877 445422 1
Q ss_pred cccccCCCCCEEeecCC-cccc-----ccccccccceecccccccccccccccccccCcCCCccccceeeCCCcccChHh
Q 001843 711 DSTPILFCLATLDVSHT-KVQR-----LPYAFWPSRHLYLNWIFLATNVFRHPQFVKWETSLQTLWGLCIKADEVQSLDY 784 (1007)
Q Consensus 711 ~~i~~L~~L~~L~L~~~-~l~~-----lP~~i~~Lr~L~l~~~~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~ 784 (1007)
.-...+++|.+|++++| .++. +-.+..+++.+.+. +|... .|+.|....
T Consensus 210 ~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~k---GC~e~-----------~le~l~~~~----------- 264 (483)
T KOG4341|consen 210 YLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLK---GCLEL-----------ELEALLKAA----------- 264 (483)
T ss_pred HHHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhc---ccccc-----------cHHHHHHHh-----------
Confidence 12345778888888888 5543 11111111122112 22100 001110000
Q ss_pred hhcCCCCCeEEeeecC-CCchhhHHHHHHHhhcCCCCCeEEEeecCC-CCCCcccc-cCCCCCcEEEecccC--CC--CC
Q 001843 785 FRRLTSLRKLGLKCSS-TTSTSLKKEIIGAVLQLSELHSLKLICETP-SYLPLLEM-AEHYKLQKLYLSGHL--PP--NS 857 (1007)
Q Consensus 785 l~~L~~L~~L~l~~~~-~~~~~l~~~~~~~l~~l~~L~~L~L~~~~~-~~~~~~~l-~~~~~L~~L~L~g~~--~~--lp 857 (1007)
+....+.++++..+. -....+. ..-..+..|+.|..++... ....+..+ ..+++|+.|.++++. .. +.
T Consensus 265 -~~~~~i~~lnl~~c~~lTD~~~~----~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft 339 (483)
T KOG4341|consen 265 -AYCLEILKLNLQHCNQLTDEDLW----LIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFT 339 (483)
T ss_pred -ccChHhhccchhhhccccchHHH----HHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhh
Confidence 011112222222222 1111222 2223344555555554221 11122222 234566666666644 11 11
Q ss_pred cCccCCCCCCceEEEEEeeecCCCC-cCc-cccCCCCcEEEeecCCcCCCc----eeecCCCCCCCcEEEeccCCCCcce
Q 001843 858 VIGDRSFPPNVVTLTLSQLRLEYDP-MPI-LGRLRQLKILRLFGGSYTGEE----MSCSSGEFPNLLVLKLWKLNRLRQW 931 (1007)
Q Consensus 858 ~~~i~~~l~~L~~L~L~~~~l~~~~-~~~-l~~Lp~L~~L~L~~~~~~~~~----l~~~~~~fp~L~~L~L~~~~~L~~l 931 (1007)
. .-.+ .+.|+.|++..|.+..+. +.. -.++|.|+.|.|+.+.....+ +.....+...|+.|.|++|+.+++-
T Consensus 340 ~-l~rn-~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~ 417 (483)
T KOG4341|consen 340 M-LGRN-CPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDA 417 (483)
T ss_pred h-hhcC-ChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHH
Confidence 1 1123 667777777777532222 222 235778888888744332222 1122345778999999999887765
Q ss_pred EEc-CCCCccccEeEeeccCCCC---CCcCccccccCccEEEecc--CCccc
Q 001843 932 RIK-EGAMPCLRQLEIRSCGYLV---PPTGLKHVTSSLREFLLTN--MPSTF 977 (1007)
Q Consensus 932 ~~~-~~~~p~L~~L~l~~c~~L~---lp~~l~~L~~~L~~L~l~~--c~~~~ 977 (1007)
..+ ...+++|+.+++.+|.... +-..-.++ |+++...+.. .|..|
T Consensus 418 ~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~~~l-p~i~v~a~~a~~t~p~~ 468 (483)
T KOG4341|consen 418 TLEHLSICRNLERIELIDCQDVTKEAISRFATHL-PNIKVHAYFAPVTPPGF 468 (483)
T ss_pred HHHHHhhCcccceeeeechhhhhhhhhHHHHhhC-ccceehhhccCCCCccc
Confidence 433 2458899999999999887 33334667 7777665543 34444
No 127
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.66 E-value=6.7e-06 Score=87.49 Aligned_cols=247 Identities=17% Similarity=0.097 Sum_probs=135.3
Q ss_pred cCCCcceEEEEeccccCCCCchhhhhhhccccccCCCCcccEEEecCCCCC--CcCCCc-------cccCCCcCcEEecc
Q 001843 632 LLSWRLHSYLVFDSRIRGTPAKQIGIILGKCISKRRLGMLKVLDLEGVYKP--MLTNNN-------ALGRLPFLEYLGLR 702 (1007)
Q Consensus 632 ~~~~~LRsL~l~~~~~~~~~~~~i~~~l~~~~~~~~l~~Lr~L~Ls~~~l~--~~~lp~-------~i~~L~~Lr~L~L~ 702 (1007)
.....+..|.+++|.+...... .+...+ .+-+.||..++|+---. ..++|. .+-.+++|++|+||
T Consensus 27 ~~~~s~~~l~lsgnt~G~EAa~----~i~~~L--~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLS 100 (382)
T KOG1909|consen 27 EPMDSLTKLDLSGNTFGTEAAR----AIAKVL--ASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLS 100 (382)
T ss_pred cccCceEEEeccCCchhHHHHH----HHHHHH--hhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeecc
Confidence 4455666677777666321211 334444 56667777777754211 113342 23345577888887
Q ss_pred cCCCc-----ccCcccccCCCCCEEeecCCcccccccc-ccc-cceecccccccccccccccccccCcCCCccccceeeC
Q 001843 703 STFID-----SLPDSTPILFCLATLDVSHTKVQRLPYA-FWP-SRHLYLNWIFLATNVFRHPQFVKWETSLQTLWGLCIK 775 (1007)
Q Consensus 703 ~n~i~-----~LP~~i~~L~~L~~L~L~~~~l~~lP~~-i~~-Lr~L~l~~~~~~~~~~~~p~~i~~L~~L~~L~~~~~~ 775 (1007)
.|-+. .+-.-|..+..|++|.|.+|.+...... +++ |.+|... ..++.-+.|+++. +..+
T Consensus 101 DNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~------------kk~~~~~~Lrv~i-~~rN 167 (382)
T KOG1909|consen 101 DNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVN------------KKAASKPKLRVFI-CGRN 167 (382)
T ss_pred ccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHH------------hccCCCcceEEEE-eecc
Confidence 77654 2223356677888888888866543221 111 1233211 1122334455542 1222
Q ss_pred CCcc----cChHhhhcCCCCCeEEeeecC---CCchhhHHHHHHHhhcCCCCCeEEEeecCCCCC----CcccccCCCCC
Q 001843 776 ADEV----QSLDYFRRLTSLRKLGLKCSS---TTSTSLKKEIIGAVLQLSELHSLKLICETPSYL----PLLEMAEHYKL 844 (1007)
Q Consensus 776 ~~~~----~~~~~l~~L~~L~~L~l~~~~---~~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~----~~~~l~~~~~L 844 (1007)
+... .....+...+.|+.+.+..+. .....+. ..+..+++|+.|+|..|..... .-..++..++|
T Consensus 168 rlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~----eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L 243 (382)
T KOG1909|consen 168 RLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALA----EALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHL 243 (382)
T ss_pred ccccccHHHHHHHHHhccccceEEEecccccCchhHHHH----HHHHhCCcceeeecccchhhhHHHHHHHHHhcccchh
Confidence 1111 122335666778888877766 1122233 6777788888888877544321 12345566788
Q ss_pred cEEEecccC-C-C----CCcCccCCCCCCceEEEEEeeecCCCCc----CccccCCCCcEEEeecCCc
Q 001843 845 QKLYLSGHL-P-P----NSVIGDRSFPPNVVTLTLSQLRLEYDPM----PILGRLRQLKILRLFGGSY 902 (1007)
Q Consensus 845 ~~L~L~g~~-~-~----lp~~~i~~~l~~L~~L~L~~~~l~~~~~----~~l~~Lp~L~~L~L~~~~~ 902 (1007)
+.|+++.|. . . +-...-.. .|+|..|.|.+|.++.... ..+...|.|+.|+|++|.+
T Consensus 244 ~El~l~dcll~~~Ga~a~~~al~~~-~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 244 RELNLGDCLLENEGAIAFVDALKES-APSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred eeecccccccccccHHHHHHHHhcc-CCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 888887765 1 1 11101123 6788888888887765432 2244588899999987776
No 128
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.64 E-value=0.00063 Score=73.75 Aligned_cols=145 Identities=17% Similarity=0.289 Sum_probs=89.6
Q ss_pred EEEEEEcCCCChHHHHHHHHHhhhhcccCCCceEEEEecCCCCCCHHHHHHHHHHHHh-hhhhhhcc---ccCHHHHHHH
Q 001843 274 QVIALIGKAGSGKTTLARIVYNRVYVKRHFTKRAWVHIPIMSMVEDRDVLADILKQID-ESLLKVEA---TLSAEELMWR 349 (1007)
Q Consensus 274 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~l~~il~~l~-~~~~~~~~---~~~~~~l~~~ 349 (1007)
..|-|+|..|.|||.+.+++++.. . -..+|+++- ..+....++..|+.+.+ .+...... ..+....+..
T Consensus 31 S~~~iyG~sgTGKT~~~r~~l~~~--n---~~~vw~n~~--ecft~~~lle~IL~~~~~~d~dg~~~~~~~en~~d~i~~ 103 (438)
T KOG2543|consen 31 SIVHIYGHSGTGKTYLVRQLLRKL--N---LENVWLNCV--ECFTYAILLEKILNKSQLADKDGDKVEGDAENFSDFIYL 103 (438)
T ss_pred eeEEEeccCCCchhHHHHHHHhhc--C---CcceeeehH--HhccHHHHHHHHHHHhccCCCchhhhhhHHHHHHHHHHH
Confidence 778999999999999999999943 2 235899988 99999999999999995 22001111 1223333444
Q ss_pred HHH--HcC--CCcEEEEEeCcCccCchhhhhhc-----cccCCCCCCcEEEEEcCCCcccccc---cCCcc-eeeecCCC
Q 001843 350 ITQ--ALD--DSTFLIVMENAEHQKSQVWDSFL-----GKLCSFTQCGKIIITTSSTEDFVEP---LGAAF-STLHVPGL 416 (1007)
Q Consensus 350 l~~--~L~--~kr~LlVlDdv~~~~~~~~~~l~-----~l~~~~~~gs~IliTTR~~~~va~~---~~~~~-~~~~l~~L 416 (1007)
+.+ ... ++.++||||+++ ...+.+.+. .+..-.....-+|+++-..- -... .+..+ .++..+.-
T Consensus 104 l~q~~~~t~~d~~~~liLDnad--~lrD~~a~ll~~l~~L~el~~~~~i~iils~~~~-e~~y~~n~g~~~i~~l~fP~Y 180 (438)
T KOG2543|consen 104 LVQWPAATNRDQKVFLILDNAD--ALRDMDAILLQCLFRLYELLNEPTIVIILSAPSC-EKQYLINTGTLEIVVLHFPQY 180 (438)
T ss_pred HHhhHHhhccCceEEEEEcCHH--hhhccchHHHHHHHHHHHHhCCCceEEEEecccc-HHHhhcccCCCCceEEecCCC
Confidence 444 222 468999999998 433333222 22211122233445444332 2222 23222 67778888
Q ss_pred CHHHHHHHHHhh
Q 001843 417 GKNESWELFLKK 428 (1007)
Q Consensus 417 ~~~ea~~Lf~~~ 428 (1007)
+.+|-.+++.+.
T Consensus 181 s~~e~~~Il~~~ 192 (438)
T KOG2543|consen 181 SVEETQVILSRD 192 (438)
T ss_pred CHHHHHHHHhcC
Confidence 999999888664
No 129
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.63 E-value=0.00059 Score=81.76 Aligned_cols=102 Identities=9% Similarity=0.050 Sum_probs=63.2
Q ss_pred CCcEEEEEeCcCccCchhhhhhc-cccCCCCCCcEEEEEcCCCcccccccCCcceeeecCCCCHHHHHHHHHhhhccccc
Q 001843 356 DSTFLIVMENAEHQKSQVWDSFL-GKLCSFTQCGKIIITTSSTEDFVEPLGAAFSTLHVPGLGKNESWELFLKKARIAED 434 (1007)
Q Consensus 356 ~kr~LlVlDdv~~~~~~~~~~l~-~l~~~~~~gs~IliTTR~~~~va~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~ 434 (1007)
+++-++|+|+++.-+....+.+. .+-.. ...+.+|++|.+...+.......+..+++.+++.++....+.+.+.....
T Consensus 126 ~~~KVvIIdEad~Lt~~a~naLLK~LEeP-p~~tv~IL~t~~~~kLl~TI~SRc~~vef~~l~~~ei~~~L~~i~~~egi 204 (620)
T PRK14954 126 GRYRVYIIDEVHMLSTAAFNAFLKTLEEP-PPHAIFIFATTELHKIPATIASRCQRFNFKRIPLDEIQSQLQMICRAEGI 204 (620)
T ss_pred CCCEEEEEeChhhcCHHHHHHHHHHHhCC-CCCeEEEEEeCChhhhhHHHHhhceEEecCCCCHHHHHHHHHHHHHHcCC
Confidence 45568899999855556677776 44333 33455554443333265544444489999999999988777765543221
Q ss_pred cccCCChHHHHHHHHHHHHcCCCc-hHHHHH
Q 001843 435 VLQSRSSELIKLKKQILNICDGLP-LRVVLL 464 (1007)
Q Consensus 435 ~~~~~~~~~~~~~~~I~~~c~GlP-Lai~~~ 464 (1007)
.-..+.+..|++.++|.. .|+..+
T Consensus 205 ------~I~~eal~~La~~s~Gdlr~al~eL 229 (620)
T PRK14954 205 ------QIDADALQLIARKAQGSMRDAQSIL 229 (620)
T ss_pred ------CCCHHHHHHHHHHhCCCHHHHHHHH
Confidence 112456788999999954 444443
No 130
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=97.63 E-value=0.0011 Score=77.62 Aligned_cols=102 Identities=8% Similarity=0.028 Sum_probs=68.1
Q ss_pred CCcEEEEEeCcCccCchhhhhhc-cccCCCCCCcEEEEEcCCCcccccccCCcceeeecCCCCHHHHHHHHHhhhccccc
Q 001843 356 DSTFLIVMENAEHQKSQVWDSFL-GKLCSFTQCGKIIITTSSTEDFVEPLGAAFSTLHVPGLGKNESWELFLKKARIAED 434 (1007)
Q Consensus 356 ~kr~LlVlDdv~~~~~~~~~~l~-~l~~~~~~gs~IliTTR~~~~va~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~ 434 (1007)
+++-++|+|+++.-+.+..+.+. .+-.. ...+++|++|.+...+.....+.+..+++.+++.++....+...+...+.
T Consensus 116 ~~~KVvIIDEad~Lt~~A~NALLK~LEEp-p~~t~FIL~ttd~~kL~~tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~EGi 194 (535)
T PRK08451 116 ARFKIFIIDEVHMLTKEAFNALLKTLEEP-PSYVKFILATTDPLKLPATILSRTQHFRFKQIPQNSIISHLKTILEKEGV 194 (535)
T ss_pred CCeEEEEEECcccCCHHHHHHHHHHHhhc-CCceEEEEEECChhhCchHHHhhceeEEcCCCCHHHHHHHHHHHHHHcCC
Confidence 45568999999876677777776 44333 44566666665544355544555589999999999988888766543322
Q ss_pred cccCCChHHHHHHHHHHHHcCCCchHHHHH
Q 001843 435 VLQSRSSELIKLKKQILNICDGLPLRVVLL 464 (1007)
Q Consensus 435 ~~~~~~~~~~~~~~~I~~~c~GlPLai~~~ 464 (1007)
.-..+.+..|++.++|.+--+..+
T Consensus 195 ------~i~~~Al~~Ia~~s~GdlR~alnl 218 (535)
T PRK08451 195 ------SYEPEALEILARSGNGSLRDTLTL 218 (535)
T ss_pred ------CCCHHHHHHHHHHcCCcHHHHHHH
Confidence 112457788999999988444333
No 131
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=97.62 E-value=0.00023 Score=74.93 Aligned_cols=162 Identities=15% Similarity=0.148 Sum_probs=97.5
Q ss_pred EEEEEEcCCCChHHHHHHHHHhhhhcccCCCceE-EEEecCCCCCCHHHHHHHHHHHHhhhhhhhccccCHHHHHHHHHH
Q 001843 274 QVIALIGKAGSGKTTLARIVYNRVYVKRHFTKRA-WVHIPIMSMVEDRDVLADILKQIDESLLKVEATLSAEELMWRITQ 352 (1007)
Q Consensus 274 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~-wv~~s~~~~~~~~~~l~~il~~l~~~~~~~~~~~~~~~l~~~l~~ 352 (1007)
.....+|++|.|||+-|..++..---.+-|.+++ =.++|.....+ +.+.= ..+...+......
T Consensus 58 p~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSderGis---vvr~K-------------ik~fakl~~~~~~ 121 (346)
T KOG0989|consen 58 PHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDERGIS---VVREK-------------IKNFAKLTVLLKR 121 (346)
T ss_pred ceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhccccccccc---chhhh-------------hcCHHHHhhcccc
Confidence 7889999999999999999887422234566643 23444111111 11000 0011111111100
Q ss_pred Hc--CCCc-EEEEEeCcCccCchhhhhhccccCCCCCCcEEEEEcCCCcccccccCCcceeeecCCCCHHHHHHHHHhhh
Q 001843 353 AL--DDST-FLIVMENAEHQKSQVWDSFLGKLCSFTQCGKIIITTSSTEDFVEPLGAAFSTLHVPGLGKNESWELFLKKA 429 (1007)
Q Consensus 353 ~L--~~kr-~LlVlDdv~~~~~~~~~~l~~l~~~~~~gs~IliTTR~~~~va~~~~~~~~~~~l~~L~~~ea~~Lf~~~a 429 (1007)
.. ..++ -.||||+++....+.|..++...+.+...++.+..+-...++.....+.+.-|..++|..++..+-+...+
T Consensus 122 ~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~pi~SRC~KfrFk~L~d~~iv~rL~~Ia 201 (346)
T KOG0989|consen 122 SDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIRPLVSRCQKFRFKKLKDEDIVDRLEKIA 201 (346)
T ss_pred ccCCCCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCChHHHhhHHHhcCCCcchHHHHHHHHHHH
Confidence 00 1234 37899999987889999998333333666676555544432555444555788999999999999888887
Q ss_pred ccccccccCCChHHHHHHHHHHHHcCCC
Q 001843 430 RIAEDVLQSRSSELIKLKKQILNICDGL 457 (1007)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~~I~~~c~Gl 457 (1007)
-..+. +-..+..+.|++.++|-
T Consensus 202 ~~E~v------~~d~~al~~I~~~S~Gd 223 (346)
T KOG0989|consen 202 SKEGV------DIDDDALKLIAKISDGD 223 (346)
T ss_pred HHhCC------CCCHHHHHHHHHHcCCc
Confidence 65443 23346677888888774
No 132
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.59 E-value=1e-05 Score=93.93 Aligned_cols=88 Identities=23% Similarity=0.263 Sum_probs=52.9
Q ss_pred cCCCcceEEEEeccccCCCCchhhhhhhccccccCCCCcccEEEecCCCCCCcCCCccccCCCcCcEEecccCCCcccCc
Q 001843 632 LLSWRLHSYLVFDSRIRGTPAKQIGIILGKCISKRRLGMLKVLDLEGVYKPMLTNNNALGRLPFLEYLGLRSTFIDSLPD 711 (1007)
Q Consensus 632 ~~~~~LRsL~l~~~~~~~~~~~~i~~~l~~~~~~~~l~~Lr~L~Ls~~~l~~~~lp~~i~~L~~Lr~L~L~~n~i~~LP~ 711 (1007)
..+++|..|.+.+|.+.. +...+ ..+.+|++|+|++|.|. .+. .+..+..|+.|++++|.|+.++
T Consensus 92 ~~~~~l~~l~l~~n~i~~---------i~~~l--~~~~~L~~L~ls~N~I~--~i~-~l~~l~~L~~L~l~~N~i~~~~- 156 (414)
T KOG0531|consen 92 SKLKSLEALDLYDNKIEK---------IENLL--SSLVNLQVLDLSFNKIT--KLE-GLSTLTLLKELNLSGNLISDIS- 156 (414)
T ss_pred ccccceeeeeccccchhh---------cccch--hhhhcchheeccccccc--ccc-chhhccchhhheeccCcchhcc-
Confidence 445666666666666531 12213 56667777777777666 342 4555666777777777766665
Q ss_pred ccccCCCCCEEeecCCccccccc
Q 001843 712 STPILFCLATLDVSHTKVQRLPY 734 (1007)
Q Consensus 712 ~i~~L~~L~~L~L~~~~l~~lP~ 734 (1007)
.+..+.+|+.|++++|.+..++.
T Consensus 157 ~~~~l~~L~~l~l~~n~i~~ie~ 179 (414)
T KOG0531|consen 157 GLESLKSLKLLDLSYNRIVDIEN 179 (414)
T ss_pred CCccchhhhcccCCcchhhhhhh
Confidence 34456677777777776655543
No 133
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.59 E-value=0.00095 Score=78.24 Aligned_cols=101 Identities=10% Similarity=0.021 Sum_probs=61.3
Q ss_pred CCcEEEEEeCcCccCchhhhhhc-cccCCCCCCcEEEE-EcCCCcccccccCCcceeeecCCCCHHHHHHHHHhhhcccc
Q 001843 356 DSTFLIVMENAEHQKSQVWDSFL-GKLCSFTQCGKIII-TTSSTEDFVEPLGAAFSTLHVPGLGKNESWELFLKKARIAE 433 (1007)
Q Consensus 356 ~kr~LlVlDdv~~~~~~~~~~l~-~l~~~~~~gs~Ili-TTR~~~~va~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~ 433 (1007)
+++-++|+|+++.-+....+.+. .+-.. .....+|+ ||+... +.......+..+.+.+++.++-...+.+.+-...
T Consensus 118 ~~~KVvIIDEad~Lt~~a~naLLk~LEep-p~~~v~Il~tt~~~k-l~~tI~SRc~~i~f~~ls~~el~~~L~~i~k~eg 195 (486)
T PRK14953 118 GKYKVYIIDEAHMLTKEAFNALLKTLEEP-PPRTIFILCTTEYDK-IPPTILSRCQRFIFSKPTKEQIKEYLKRICNEEK 195 (486)
T ss_pred CCeeEEEEEChhhcCHHHHHHHHHHHhcC-CCCeEEEEEECCHHH-HHHHHHHhceEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 56669999999855555666666 44333 33444554 444333 4433333337899999999998888777654322
Q ss_pred ccccCCChHHHHHHHHHHHHcCCCchHHHHH
Q 001843 434 DVLQSRSSELIKLKKQILNICDGLPLRVVLL 464 (1007)
Q Consensus 434 ~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~ 464 (1007)
. ....+.+..|++.++|.+-.+..+
T Consensus 196 i------~id~~al~~La~~s~G~lr~al~~ 220 (486)
T PRK14953 196 I------EYEEKALDLLAQASEGGMRDAASL 220 (486)
T ss_pred C------CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 1 112355677888888866544333
No 134
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.58 E-value=0.0013 Score=79.19 Aligned_cols=102 Identities=6% Similarity=-0.022 Sum_probs=64.7
Q ss_pred CCcEEEEEeCcCccCchhhhhhc-cccCCCCCCcEEEEEcCCCcccccccCCcceeeecCCCCHHHHHHHHHhhhccccc
Q 001843 356 DSTFLIVMENAEHQKSQVWDSFL-GKLCSFTQCGKIIITTSSTEDFVEPLGAAFSTLHVPGLGKNESWELFLKKARIAED 434 (1007)
Q Consensus 356 ~kr~LlVlDdv~~~~~~~~~~l~-~l~~~~~~gs~IliTTR~~~~va~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~ 434 (1007)
+++-++|+|+++.-+.+.++.+. .+-.. ...+.+|++|.+...+.......+..+++..++.++....+.+.+.....
T Consensus 120 ~~~KViIIDEad~Lt~~a~naLLK~LEeP-p~~tvfIL~t~~~~~llpTIrSRc~~~~f~~l~~~ei~~~L~~ia~kegi 198 (620)
T PRK14948 120 ARWKVYVIDECHMLSTAAFNALLKTLEEP-PPRVVFVLATTDPQRVLPTIISRCQRFDFRRIPLEAMVQHLSEIAEKESI 198 (620)
T ss_pred CCceEEEEECccccCHHHHHHHHHHHhcC-CcCeEEEEEeCChhhhhHHHHhheeEEEecCCCHHHHHHHHHHHHHHhCC
Confidence 45568999999866666777777 44332 33445554454443355554554588999999999988877766543221
Q ss_pred cccCCChHHHHHHHHHHHHcCCCchHHHHH
Q 001843 435 VLQSRSSELIKLKKQILNICDGLPLRVVLL 464 (1007)
Q Consensus 435 ~~~~~~~~~~~~~~~I~~~c~GlPLai~~~ 464 (1007)
. -..+.+..|++.++|.+..+..+
T Consensus 199 ---~---is~~al~~La~~s~G~lr~A~~l 222 (620)
T PRK14948 199 ---E---IEPEALTLVAQRSQGGLRDAESL 222 (620)
T ss_pred ---C---CCHHHHHHHHHHcCCCHHHHHHH
Confidence 1 11345778899999977544433
No 135
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.55 E-value=0.00058 Score=85.55 Aligned_cols=23 Identities=35% Similarity=0.382 Sum_probs=19.9
Q ss_pred EEEEEEcCCCChHHHHHHHHHhh
Q 001843 274 QVIALIGKAGSGKTTLARIVYNR 296 (1007)
Q Consensus 274 ~vi~I~G~gGiGKTtLa~~v~~~ 296 (1007)
.-+.++|.+|+||||+|..+++.
T Consensus 209 ~n~lLvG~pGvGKTal~~~La~~ 231 (852)
T TIGR03345 209 NNPILTGEAGVGKTAVVEGLALR 231 (852)
T ss_pred CceeEECCCCCCHHHHHHHHHHH
Confidence 34469999999999999999983
No 136
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=97.54 E-value=0.0011 Score=76.85 Aligned_cols=156 Identities=13% Similarity=0.135 Sum_probs=87.8
Q ss_pred EEEEEEcCCCChHHHHHHHHHhhhhcccCCC--ceEEEEecCCCCCCHHHHHHHHHHHHhhhhhhhccccCHHHHHHHHH
Q 001843 274 QVIALIGKAGSGKTTLARIVYNRVYVKRHFT--KRAWVHIPIMSMVEDRDVLADILKQIDESLLKVEATLSAEELMWRIT 351 (1007)
Q Consensus 274 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~--~~~wv~~s~~~~~~~~~~l~~il~~l~~~~~~~~~~~~~~~l~~~l~ 351 (1007)
..+.|+|..|+|||+|++++++ .+.+... .+++++.. ++...+...+... ..... .
T Consensus 137 n~l~l~G~~G~GKThL~~ai~~--~l~~~~~~~~v~yi~~~--------~~~~~~~~~~~~~--------~~~~~----~ 194 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLLHAIGN--EILENNPNAKVVYVSSE--------KFTNDFVNALRNN--------KMEEF----K 194 (405)
T ss_pred CeEEEECCCCCcHHHHHHHHHH--HHHHhCCCCcEEEEEHH--------HHHHHHHHHHHcC--------CHHHH----H
Confidence 5689999999999999999999 4444432 35555433 3334444443321 22222 2
Q ss_pred HHcCCCcEEEEEeCcCccCch-hh-hhhc-cccCCCCCCcEEEEEcCCCc-c-------cccccCCcceeeecCCCCHHH
Q 001843 352 QALDDSTFLIVMENAEHQKSQ-VW-DSFL-GKLCSFTQCGKIIITTSSTE-D-------FVEPLGAAFSTLHVPGLGKNE 420 (1007)
Q Consensus 352 ~~L~~kr~LlVlDdv~~~~~~-~~-~~l~-~l~~~~~~gs~IliTTR~~~-~-------va~~~~~~~~~~~l~~L~~~e 420 (1007)
+.++. .-+|||||++..... .+ +.+. .+-.-...+..+|||+.... . +...+... ..+.+++.+.++
T Consensus 195 ~~~~~-~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g-~~v~i~~pd~~~ 272 (405)
T TIGR00362 195 EKYRS-VDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEWG-LVVDIEPPDLET 272 (405)
T ss_pred HHHHh-CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccCC-eEEEeCCCCHHH
Confidence 33322 338899999732222 11 2222 11110023456888876422 0 22222222 578999999999
Q ss_pred HHHHHHhhhccccccccCCChHHHHHHHHHHHHcCCCch
Q 001843 421 SWELFLKKARIAEDVLQSRSSELIKLKKQILNICDGLPL 459 (1007)
Q Consensus 421 a~~Lf~~~a~~~~~~~~~~~~~~~~~~~~I~~~c~GlPL 459 (1007)
-..++.+.+..... .. .++....|++.+.|..-
T Consensus 273 r~~il~~~~~~~~~---~l---~~e~l~~ia~~~~~~~r 305 (405)
T TIGR00362 273 RLAILQKKAEEEGL---EL---PDEVLEFIAKNIRSNVR 305 (405)
T ss_pred HHHHHHHHHHHcCC---CC---CHHHHHHHHHhcCCCHH
Confidence 99999888765322 11 24566677777766544
No 137
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=97.53 E-value=0.00027 Score=80.99 Aligned_cols=134 Identities=17% Similarity=0.214 Sum_probs=72.7
Q ss_pred cEEEEEEcCCCChHHHHHHHHHhhhhcccCCCceEEEEecCCCCCCHHHHHHHHHHHHhhhhhhhccccCHHHHHHHHHH
Q 001843 273 TQVIALIGKAGSGKTTLARIVYNRVYVKRHFTKRAWVHIPIMSMVEDRDVLADILKQIDESLLKVEATLSAEELMWRITQ 352 (1007)
Q Consensus 273 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~l~~il~~l~~~~~~~~~~~~~~~l~~~l~~ 352 (1007)
++-|.++|++|+|||++|+++++ ..... |+.++ . .+ +.....+ .....+...+..
T Consensus 165 p~gvLL~GppGtGKT~lAkaia~--~~~~~-----~i~v~--~----~~----l~~~~~g--------~~~~~i~~~f~~ 219 (389)
T PRK03992 165 PKGVLLYGPPGTGKTLLAKAVAH--ETNAT-----FIRVV--G----SE----LVQKFIG--------EGARLVRELFEL 219 (389)
T ss_pred CCceEEECCCCCChHHHHHHHHH--HhCCC-----EEEee--h----HH----HhHhhcc--------chHHHHHHHHHH
Confidence 36789999999999999999999 34332 33333 1 11 1111100 011111112222
Q ss_pred HcCCCcEEEEEeCcCcc-----------Cchhhhhhcccc---CCC--CCCcEEEEEcCCCccccccc-C--Ccceeeec
Q 001843 353 ALDDSTFLIVMENAEHQ-----------KSQVWDSFLGKL---CSF--TQCGKIIITTSSTEDFVEPL-G--AAFSTLHV 413 (1007)
Q Consensus 353 ~L~~kr~LlVlDdv~~~-----------~~~~~~~l~~l~---~~~--~~gs~IliTTR~~~~va~~~-~--~~~~~~~l 413 (1007)
.-...+.+|+||+++.- +.+.+..+..+. +++ ..+..||.||.....+-... . .....+.+
T Consensus 220 a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~VI~aTn~~~~ld~allRpgRfd~~I~v 299 (389)
T PRK03992 220 AREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRGNVKIIAATNRIDILDPAILRPGRFDRIIEV 299 (389)
T ss_pred HHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCCCCEEEEEecCChhhCCHHHcCCccCceEEEE
Confidence 22356789999999731 011111222221 111 23556777777654122221 1 11167999
Q ss_pred CCCCHHHHHHHHHhhhcc
Q 001843 414 PGLGKNESWELFLKKARI 431 (1007)
Q Consensus 414 ~~L~~~ea~~Lf~~~a~~ 431 (1007)
++.+.++-.++|+.+...
T Consensus 300 ~~P~~~~R~~Il~~~~~~ 317 (389)
T PRK03992 300 PLPDEEGRLEILKIHTRK 317 (389)
T ss_pred CCCCHHHHHHHHHHHhcc
Confidence 999999999999987654
No 138
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.50 E-value=0.0017 Score=76.24 Aligned_cols=178 Identities=14% Similarity=0.161 Sum_probs=100.5
Q ss_pred EEEEEEcCCCChHHHHHHHHHhhhhcccCCC--ceEEEEecCCCCCCHHHHHHHHHHHHhhhhhhhccccCHHHHHHHHH
Q 001843 274 QVIALIGKAGSGKTTLARIVYNRVYVKRHFT--KRAWVHIPIMSMVEDRDVLADILKQIDESLLKVEATLSAEELMWRIT 351 (1007)
Q Consensus 274 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~--~~~wv~~s~~~~~~~~~~l~~il~~l~~~~~~~~~~~~~~~l~~~l~ 351 (1007)
.-+.|+|..|+|||+|++++++ .+...+. .+++++.. ++..++...+... ... .+.
T Consensus 149 ~~l~l~G~~G~GKThL~~ai~~--~~~~~~~~~~v~yi~~~--------~~~~~~~~~~~~~--------~~~----~~~ 206 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLHAIGN--YILEKNPNAKVVYVTSE--------KFTNDFVNALRNN--------TME----EFK 206 (450)
T ss_pred CeEEEECCCCCCHHHHHHHHHH--HHHHhCCCCeEEEEEHH--------HHHHHHHHHHHcC--------cHH----HHH
Confidence 5689999999999999999999 4555543 24555443 3333444443221 122 223
Q ss_pred HHcCCCcEEEEEeCcCccCchh-h-hhhc----cccCCCCCCcEEEEEcCCCc-c-------cccccCCcceeeecCCCC
Q 001843 352 QALDDSTFLIVMENAEHQKSQV-W-DSFL----GKLCSFTQCGKIIITTSSTE-D-------FVEPLGAAFSTLHVPGLG 417 (1007)
Q Consensus 352 ~~L~~kr~LlVlDdv~~~~~~~-~-~~l~----~l~~~~~~gs~IliTTR~~~-~-------va~~~~~~~~~~~l~~L~ 417 (1007)
+.++ +.-+|||||+....... + +.+. .+.. .|..|||||.... . +...+... ..+++++++
T Consensus 207 ~~~~-~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~---~~~~iiits~~~p~~l~~l~~~l~SRl~~g-l~v~i~~pd 281 (450)
T PRK00149 207 EKYR-SVDVLLIDDIQFLAGKERTQEEFFHTFNALHE---AGKQIVLTSDRPPKELPGLEERLRSRFEWG-LTVDIEPPD 281 (450)
T ss_pred HHHh-cCCEEEEehhhhhcCCHHHHHHHHHHHHHHHH---CCCcEEEECCCCHHHHHHHHHHHHhHhcCC-eeEEecCCC
Confidence 3333 24489999997322111 1 2222 2222 3456888887542 1 12233332 689999999
Q ss_pred HHHHHHHHHhhhccccccccCCChHHHHHHHHHHHHcCCCchH----HHHHHHH--hcCCCCChHHHHHHHHH
Q 001843 418 KNESWELFLKKARIAEDVLQSRSSELIKLKKQILNICDGLPLR----VVLLAGL--LSTKQPSYEEWSKVIER 484 (1007)
Q Consensus 418 ~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~~~~I~~~c~GlPLa----i~~~g~~--L~~~~~~~~~w~~~l~~ 484 (1007)
.++-.+++.+.+..... ..+ +++..-|++.+.|..=. +..+..+ +.++.-+....+.++..
T Consensus 282 ~~~r~~il~~~~~~~~~---~l~---~e~l~~ia~~~~~~~R~l~~~l~~l~~~~~~~~~~it~~~~~~~l~~ 348 (450)
T PRK00149 282 LETRIAILKKKAEEEGI---DLP---DEVLEFIAKNITSNVRELEGALNRLIAYASLTGKPITLELAKEALKD 348 (450)
T ss_pred HHHHHHHHHHHHHHcCC---CCC---HHHHHHHHcCcCCCHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHH
Confidence 99999999988764221 112 35677777777776543 2222222 22233345666666654
No 139
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=97.49 E-value=0.0018 Score=77.26 Aligned_cols=100 Identities=8% Similarity=0.028 Sum_probs=64.9
Q ss_pred CCCcEEEEEeCcCccCchhhhhhc-cccCCCCCCcEEEEEcCCCcccccccCCcceeeecCCCCHHHHHHHHHhhhcccc
Q 001843 355 DDSTFLIVMENAEHQKSQVWDSFL-GKLCSFTQCGKIIITTSSTEDFVEPLGAAFSTLHVPGLGKNESWELFLKKARIAE 433 (1007)
Q Consensus 355 ~~kr~LlVlDdv~~~~~~~~~~l~-~l~~~~~~gs~IliTTR~~~~va~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~ 433 (1007)
.+++-++|+|++..-+...++.+. .+-.. ...+.+|.+|.....+.......+..+++.+++.++-.+.+.+.+....
T Consensus 117 ~~~~KVvIIDEa~~Ls~~a~naLLK~LEep-p~~~vfI~~tte~~kL~~tI~SRc~~~~f~~l~~~el~~~L~~i~~~eg 195 (563)
T PRK06647 117 SSRYRVYIIDEVHMLSNSAFNALLKTIEEP-PPYIVFIFATTEVHKLPATIKSRCQHFNFRLLSLEKIYNMLKKVCLEDQ 195 (563)
T ss_pred cCCCEEEEEEChhhcCHHHHHHHHHhhccC-CCCEEEEEecCChHHhHHHHHHhceEEEecCCCHHHHHHHHHHHHHHcC
Confidence 356668999999866666677777 44433 4455666555443325544444447899999999998888877664322
Q ss_pred ccccCCChHHHHHHHHHHHHcCCCchHH
Q 001843 434 DVLQSRSSELIKLKKQILNICDGLPLRV 461 (1007)
Q Consensus 434 ~~~~~~~~~~~~~~~~I~~~c~GlPLai 461 (1007)
. +-..+.+..|++.++|.+-.+
T Consensus 196 i------~id~eAl~lLa~~s~GdlR~a 217 (563)
T PRK06647 196 I------KYEDEALKWIAYKSTGSVRDA 217 (563)
T ss_pred C------CCCHHHHHHHHHHcCCCHHHH
Confidence 1 122456777888999977433
No 140
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=97.49 E-value=0.0015 Score=70.05 Aligned_cols=175 Identities=13% Similarity=0.164 Sum_probs=104.5
Q ss_pred EEEEEEcCCCChHHHHHHHHHhhhhcccCC------CceEEEEecCCCCCCHHHHHHHHHHHHhhhhhhhccccCHHHHH
Q 001843 274 QVIALIGKAGSGKTTLARIVYNRVYVKRHF------TKRAWVHIPIMSMVEDRDVLADILKQIDESLLKVEATLSAEELM 347 (1007)
Q Consensus 274 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F------~~~~wv~~s~~~~~~~~~~l~~il~~l~~~~~~~~~~~~~~~l~ 347 (1007)
.-+.|||..|.|||+++++++... -..+ -.++.|.+. ..++...+...|+.+++.+ .....+...+.
T Consensus 62 p~lLivG~snnGKT~Ii~rF~~~h--p~~~d~~~~~~PVv~vq~P--~~p~~~~~Y~~IL~~lgaP---~~~~~~~~~~~ 134 (302)
T PF05621_consen 62 PNLLIVGDSNNGKTMIIERFRRLH--PPQSDEDAERIPVVYVQMP--PEPDERRFYSAILEALGAP---YRPRDRVAKLE 134 (302)
T ss_pred CceEEecCCCCcHHHHHHHHHHHC--CCCCCCCCccccEEEEecC--CCCChHHHHHHHHHHhCcc---cCCCCCHHHHH
Confidence 678999999999999999998742 1112 135666677 8899999999999999986 22334444555
Q ss_pred HHHHHHcCC-CcEEEEEeCcCcc-------CchhhhhhccccCCCCCCcEEEEEcCCCcc-------cccccCCcceeee
Q 001843 348 WRITQALDD-STFLIVMENAEHQ-------KSQVWDSFLGKLCSFTQCGKIIITTSSTED-------FVEPLGAAFSTLH 412 (1007)
Q Consensus 348 ~~l~~~L~~-kr~LlVlDdv~~~-------~~~~~~~l~~l~~~~~~gs~IliTTR~~~~-------va~~~~~~~~~~~ 412 (1007)
..+...++. +-=+||+|.+.+. ..+..+.++.+.+. -.-+-|.|-|+.... .++.+ .++.
T Consensus 135 ~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~Ne-L~ipiV~vGt~~A~~al~~D~QLa~RF----~~~~ 209 (302)
T PF05621_consen 135 QQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNE-LQIPIVGVGTREAYRALRTDPQLASRF----EPFE 209 (302)
T ss_pred HHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhc-cCCCeEEeccHHHHHHhccCHHHHhcc----CCcc
Confidence 555555544 3448999999741 12223333344333 344556666654220 22222 5666
Q ss_pred cCCCCHH-HHHHHHHhhhccccccc-cCCChHHHHHHHHHHHHcCCCchHHH
Q 001843 413 VPGLGKN-ESWELFLKKARIAEDVL-QSRSSELIKLKKQILNICDGLPLRVV 462 (1007)
Q Consensus 413 l~~L~~~-ea~~Lf~~~a~~~~~~~-~~~~~~~~~~~~~I~~~c~GlPLai~ 462 (1007)
++.-..+ +...|+..... .-+. ....-...+++..|...++|+.--+.
T Consensus 210 Lp~W~~d~ef~~LL~s~e~--~LPLr~~S~l~~~~la~~i~~~s~G~iG~l~ 259 (302)
T PF05621_consen 210 LPRWELDEEFRRLLASFER--ALPLRKPSNLASPELARRIHERSEGLIGELS 259 (302)
T ss_pred CCCCCCCcHHHHHHHHHHH--hCCCCCCCCCCCHHHHHHHHHHcCCchHHHH
Confidence 6665543 44445433211 1110 01122346789999999999875443
No 141
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.48 E-value=1.9e-05 Score=82.05 Aligned_cols=59 Identities=22% Similarity=0.216 Sum_probs=27.7
Q ss_pred cccEEEecCCCCCCcCCCcccc-CCCcCcEEecccCCCcccC---cccccCCCCCEEeecCCc
Q 001843 670 MLKVLDLEGVYKPMLTNNNALG-RLPFLEYLGLRSTFIDSLP---DSTPILFCLATLDVSHTK 728 (1007)
Q Consensus 670 ~Lr~L~Ls~~~l~~~~lp~~i~-~L~~Lr~L~L~~n~i~~LP---~~i~~L~~L~~L~L~~~~ 728 (1007)
.+..|.+.++.+........|+ ...+++.|+|.+|.|+... .-+.+|+.|++|+|+.|.
T Consensus 46 a~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~ 108 (418)
T KOG2982|consen 46 ALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNS 108 (418)
T ss_pred chhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCc
Confidence 3334555555544211112222 3455666666666555322 223456666666666553
No 142
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.46 E-value=0.0011 Score=79.68 Aligned_cols=102 Identities=10% Similarity=-0.004 Sum_probs=64.2
Q ss_pred CCcEEEEEeCcCccCchhhhhhc-cccCCCCCCcEEEE-EcCCCcccccccCCcceeeecCCCCHHHHHHHHHhhhcccc
Q 001843 356 DSTFLIVMENAEHQKSQVWDSFL-GKLCSFTQCGKIII-TTSSTEDFVEPLGAAFSTLHVPGLGKNESWELFLKKARIAE 433 (1007)
Q Consensus 356 ~kr~LlVlDdv~~~~~~~~~~l~-~l~~~~~~gs~Ili-TTR~~~~va~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~ 433 (1007)
+++-++|+|+++.-+....+.+. .+-.. ...+.+|+ ||.... +.....+.+..+++++++.++....+...+....
T Consensus 118 ~~~KVvIIdev~~Lt~~a~naLLk~LEep-p~~~~fIl~t~~~~k-l~~tI~SRc~~~~f~~l~~~~i~~~L~~i~~~eg 195 (576)
T PRK14965 118 SRYKIFIIDEVHMLSTNAFNALLKTLEEP-PPHVKFIFATTEPHK-VPITILSRCQRFDFRRIPLQKIVDRLRYIADQEG 195 (576)
T ss_pred CCceEEEEEChhhCCHHHHHHHHHHHHcC-CCCeEEEEEeCChhh-hhHHHHHhhhhhhcCCCCHHHHHHHHHHHHHHhC
Confidence 45558999999865666677676 44333 34455555 444444 6655555558899999999998877766543322
Q ss_pred ccccCCChHHHHHHHHHHHHcCCCc-hHHHHHH
Q 001843 434 DVLQSRSSELIKLKKQILNICDGLP-LRVVLLA 465 (1007)
Q Consensus 434 ~~~~~~~~~~~~~~~~I~~~c~GlP-Lai~~~g 465 (1007)
. .-..+....|++.++|.. .|+..+-
T Consensus 196 i------~i~~~al~~la~~a~G~lr~al~~Ld 222 (576)
T PRK14965 196 I------SISDAALALVARKGDGSMRDSLSTLD 222 (576)
T ss_pred C------CCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 1 112456677888888855 4555543
No 143
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.43 E-value=3e-06 Score=97.37 Aligned_cols=109 Identities=26% Similarity=0.262 Sum_probs=62.9
Q ss_pred HhhhcCCCCCeEEeeecCCCchhhHHHHHHHhhcCCCCCeEEEeecCCCCCCcccccCCCCCcEEEecccC-CCCCcCcc
Q 001843 783 DYFRRLTSLRKLGLKCSSTTSTSLKKEIIGAVLQLSELHSLKLICETPSYLPLLEMAEHYKLQKLYLSGHL-PPNSVIGD 861 (1007)
Q Consensus 783 ~~l~~L~~L~~L~l~~~~~~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~L~g~~-~~lp~~~i 861 (1007)
..+.-++.|+.|+++.|. .... ..+..+++|++|+|++|......--+...+ .|+.|.|++|. ..+- .+
T Consensus 181 ~SLqll~ale~LnLshNk--~~~v-----~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc-~L~~L~lrnN~l~tL~--gi 250 (1096)
T KOG1859|consen 181 ESLQLLPALESLNLSHNK--FTKV-----DNLRRLPKLKHLDLSYNCLRHVPQLSMVGC-KLQLLNLRNNALTTLR--GI 250 (1096)
T ss_pred HHHHHHHHhhhhccchhh--hhhh-----HHHHhcccccccccccchhccccccchhhh-hheeeeecccHHHhhh--hH
Confidence 345556677777777665 2211 455667777777777754433111111122 37777777765 4444 34
Q ss_pred CCCCCCceEEEEEeeecCC-CCcCccccCCCCcEEEeecCCc
Q 001843 862 RSFPPNVVTLTLSQLRLEY-DPMPILGRLRQLKILRLFGGSY 902 (1007)
Q Consensus 862 ~~~l~~L~~L~L~~~~l~~-~~~~~l~~Lp~L~~L~L~~~~~ 902 (1007)
.+ +.+|..|+|++|-+.+ ..+..++.|..|+.|+|.+|..
T Consensus 251 e~-LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 251 EN-LKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred Hh-hhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence 55 7777777777775533 2345566677777777776643
No 144
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=97.43 E-value=0.0029 Score=75.79 Aligned_cols=99 Identities=6% Similarity=-0.006 Sum_probs=62.1
Q ss_pred CCCcEEEEEeCcCccCchhhhhhc-cccCCCCCCcEEEEEcCCCcccccccCCcceeeecCCCCHHHHHHHHHhhhcccc
Q 001843 355 DDSTFLIVMENAEHQKSQVWDSFL-GKLCSFTQCGKIIITTSSTEDFVEPLGAAFSTLHVPGLGKNESWELFLKKARIAE 433 (1007)
Q Consensus 355 ~~kr~LlVlDdv~~~~~~~~~~l~-~l~~~~~~gs~IliTTR~~~~va~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~ 433 (1007)
.+++-++|+|+++.-....++.+. .+-.. .....+|++|.....+.......+..+++.+++.++....+...+...+
T Consensus 117 ~~~~kViIIDE~~~Lt~~a~naLLKtLEep-p~~~ifIlatt~~~ki~~tI~SRc~~~~f~~~~~~ei~~~L~~i~~~eg 195 (559)
T PRK05563 117 EAKYKVYIIDEVHMLSTGAFNALLKTLEEP-PAHVIFILATTEPHKIPATILSRCQRFDFKRISVEDIVERLKYILDKEG 195 (559)
T ss_pred cCCeEEEEEECcccCCHHHHHHHHHHhcCC-CCCeEEEEEeCChhhCcHHHHhHheEEecCCCCHHHHHHHHHHHHHHcC
Confidence 355668899999865666677776 44332 3344444444333325554444447899999999998888877664322
Q ss_pred ccccCCChHHHHHHHHHHHHcCCCchH
Q 001843 434 DVLQSRSSELIKLKKQILNICDGLPLR 460 (1007)
Q Consensus 434 ~~~~~~~~~~~~~~~~I~~~c~GlPLa 460 (1007)
. .-..+.+..|++.++|-+--
T Consensus 196 i------~i~~~al~~ia~~s~G~~R~ 216 (559)
T PRK05563 196 I------EYEDEALRLIARAAEGGMRD 216 (559)
T ss_pred C------CCCHHHHHHHHHHcCCCHHH
Confidence 1 11235567788888887643
No 145
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.42 E-value=0.00094 Score=83.04 Aligned_cols=132 Identities=16% Similarity=0.187 Sum_probs=66.4
Q ss_pred EEEEEcCCCChHHHHHHHHHhhhh---cccCC-CceEEE-EecCCCCCCHHHHHHHHHHHHhhhhhhhccccCHHHHHHH
Q 001843 275 VIALIGKAGSGKTTLARIVYNRVY---VKRHF-TKRAWV-HIPIMSMVEDRDVLADILKQIDESLLKVEATLSAEELMWR 349 (1007)
Q Consensus 275 vi~I~G~gGiGKTtLa~~v~~~~~---~~~~F-~~~~wv-~~s~~~~~~~~~~l~~il~~l~~~~~~~~~~~~~~~l~~~ 349 (1007)
-+.++|.+|+|||++|+.+++.-. +...+ +..+|. +++ .+... .....+.+.....
T Consensus 205 n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~~~----------------~l~a~---~~~~g~~e~~l~~ 265 (731)
T TIGR02639 205 NPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLDMG----------------SLLAG---TKYRGDFEERLKA 265 (731)
T ss_pred ceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEecHH----------------HHhhh---ccccchHHHHHHH
Confidence 456999999999999999998421 11111 333442 211 11000 0011122223333
Q ss_pred HHHHc-CCCcEEEEEeCcCccC---------chhhhhhccccCCCCCCcEEEE-EcCCCcccc------cccCCcceeee
Q 001843 350 ITQAL-DDSTFLIVMENAEHQK---------SQVWDSFLGKLCSFTQCGKIII-TTSSTEDFV------EPLGAAFSTLH 412 (1007)
Q Consensus 350 l~~~L-~~kr~LlVlDdv~~~~---------~~~~~~l~~l~~~~~~gs~Ili-TTR~~~~va------~~~~~~~~~~~ 412 (1007)
+.+.+ +.++.+|++|+++.-. .+.-+.+++.... + .-++|- ||+ .+ .. .........++
T Consensus 266 i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~~-g-~i~~IgaTt~-~e-~~~~~~~d~al~rRf~~i~ 341 (731)
T TIGR02639 266 VVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPALSS-G-KLRCIGSTTY-EE-YKNHFEKDRALSRRFQKID 341 (731)
T ss_pred HHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHHhC-C-CeEEEEecCH-HH-HHHHhhhhHHHHHhCceEE
Confidence 33333 3468899999987210 1112223332222 1 223333 454 11 11 11111126789
Q ss_pred cCCCCHHHHHHHHHhhh
Q 001843 413 VPGLGKNESWELFLKKA 429 (1007)
Q Consensus 413 l~~L~~~ea~~Lf~~~a 429 (1007)
+++++.++..+++....
T Consensus 342 v~~p~~~~~~~il~~~~ 358 (731)
T TIGR02639 342 VGEPSIEETVKILKGLK 358 (731)
T ss_pred eCCCCHHHHHHHHHHHH
Confidence 99999999999998654
No 146
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=97.41 E-value=0.0011 Score=77.01 Aligned_cols=131 Identities=18% Similarity=0.213 Sum_probs=76.6
Q ss_pred EEEEEEcCCCChHHHHHHHHHhhhhcccCCCceEEEEecCCCCCCHHHHHHHHHHHHhhhhhhhccccCHHHHHHHHHHH
Q 001843 274 QVIALIGKAGSGKTTLARIVYNRVYVKRHFTKRAWVHIPIMSMVEDRDVLADILKQIDESLLKVEATLSAEELMWRITQA 353 (1007)
Q Consensus 274 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~l~~il~~l~~~~~~~~~~~~~~~l~~~l~~~ 353 (1007)
.-+.|+|..|+|||+|++++++ .+....-.+++++.. .+...+...+... . ...+++.
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~--~l~~~~~~v~yi~~~--------~f~~~~~~~l~~~--------~----~~~f~~~ 199 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVH--ALRESGGKILYVRSE--------LFTEHLVSAIRSG--------E----MQRFRQF 199 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHH--HHHHcCCCEEEeeHH--------HHHHHHHHHHhcc--------h----HHHHHHH
Confidence 5678999999999999999999 443333344555432 2333333333221 1 1223444
Q ss_pred cCCCcEEEEEeCcCccCchhh--hhhc----cccCCCCCCcEEEEEcCCCc--------ccccccCCcceeeecCCCCHH
Q 001843 354 LDDSTFLIVMENAEHQKSQVW--DSFL----GKLCSFTQCGKIIITTSSTE--------DFVEPLGAAFSTLHVPGLGKN 419 (1007)
Q Consensus 354 L~~kr~LlVlDdv~~~~~~~~--~~l~----~l~~~~~~gs~IliTTR~~~--------~va~~~~~~~~~~~l~~L~~~ 419 (1007)
++ ..-+|++||+.......| +.+. .+.. .|..||+||.... ++...+... ..+.+++++.+
T Consensus 200 ~~-~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~---~~k~IIlts~~~p~~l~~l~~rL~SR~~~G-l~~~l~~pd~e 274 (445)
T PRK12422 200 YR-NVDALFIEDIEVFSGKGATQEEFFHTFNSLHT---EGKLIVISSTCAPQDLKAMEERLISRFEWG-IAIPLHPLTKE 274 (445)
T ss_pred cc-cCCEEEEcchhhhcCChhhHHHHHHHHHHHHH---CCCcEEEecCCCHHHHhhhHHHHHhhhcCC-eEEecCCCCHH
Confidence 43 344888899873322222 2222 2222 3457888886531 122333333 68899999999
Q ss_pred HHHHHHHhhhcc
Q 001843 420 ESWELFLKKARI 431 (1007)
Q Consensus 420 ea~~Lf~~~a~~ 431 (1007)
+-..++.+++-.
T Consensus 275 ~r~~iL~~k~~~ 286 (445)
T PRK12422 275 GLRSFLERKAEA 286 (445)
T ss_pred HHHHHHHHHHHH
Confidence 999999887754
No 147
>PRK08116 hypothetical protein; Validated
Probab=97.40 E-value=0.00032 Score=75.89 Aligned_cols=104 Identities=22% Similarity=0.342 Sum_probs=60.2
Q ss_pred EEEEEEcCCCChHHHHHHHHHhhhhcccCCCceEEEEecCCCCCCHHHHHHHHHHHHhhhhhhhccccCHHHHHHHHHHH
Q 001843 274 QVIALIGKAGSGKTTLARIVYNRVYVKRHFTKRAWVHIPIMSMVEDRDVLADILKQIDESLLKVEATLSAEELMWRITQA 353 (1007)
Q Consensus 274 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~l~~il~~l~~~~~~~~~~~~~~~l~~~l~~~ 353 (1007)
..+.++|..|+|||.||.++++ .+..+...+++++++ +++..+....... ...+... +.+.
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~--~l~~~~~~v~~~~~~--------~ll~~i~~~~~~~-----~~~~~~~----~~~~ 175 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIAN--ELIEKGVPVIFVNFP--------QLLNRIKSTYKSS-----GKEDENE----IIRS 175 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHH--HHHHcCCeEEEEEHH--------HHHHHHHHHHhcc-----ccccHHH----HHHH
Confidence 4688999999999999999999 444444456666654 3343333332211 1112222 2333
Q ss_pred cCCCcEEEEEeCcCccCchhhhh--hccccCC-CCCCcEEEEEcCCC
Q 001843 354 LDDSTFLIVMENAEHQKSQVWDS--FLGKLCS-FTQCGKIIITTSST 397 (1007)
Q Consensus 354 L~~kr~LlVlDdv~~~~~~~~~~--l~~l~~~-~~~gs~IliTTR~~ 397 (1007)
+..-. ||||||+..+....|.. +..+.+. ...+..+||||...
T Consensus 176 l~~~d-lLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~~ 221 (268)
T PRK08116 176 LVNAD-LLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNLS 221 (268)
T ss_pred hcCCC-EEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCC
Confidence 44334 89999995445555644 2222221 13456799998754
No 148
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=97.37 E-value=0.0023 Score=69.95 Aligned_cols=136 Identities=13% Similarity=0.078 Sum_probs=70.7
Q ss_pred EEEEEEcCCCChHHHHHHHHHhhhhcccCCCceEEEEecCCCCCCHHHHHHHHHHHHhhhhhhhccccCHHHHHHHHHHH
Q 001843 274 QVIALIGKAGSGKTTLARIVYNRVYVKRHFTKRAWVHIPIMSMVEDRDVLADILKQIDESLLKVEATLSAEELMWRITQA 353 (1007)
Q Consensus 274 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~l~~il~~l~~~~~~~~~~~~~~~l~~~l~~~ 353 (1007)
.-+.++|.+|+||||+|+.++.-..-.......-|+.++ . . +++..+.+. ........+.+.
T Consensus 59 ~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~--~----~----~l~~~~~g~--------~~~~~~~~~~~a 120 (284)
T TIGR02880 59 LHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVT--R----D----DLVGQYIGH--------TAPKTKEILKRA 120 (284)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEec--H----H----HHhHhhccc--------chHHHHHHHHHc
Confidence 368899999999999998887732111112222355554 1 1 122222111 111122222222
Q ss_pred cCCCcEEEEEeCcCcc---------CchhhhhhccccCCCCCCcEEEEEcCCCcccccccCC------c-ceeeecCCCC
Q 001843 354 LDDSTFLIVMENAEHQ---------KSQVWDSFLGKLCSFTQCGKIIITTSSTEDFVEPLGA------A-FSTLHVPGLG 417 (1007)
Q Consensus 354 L~~kr~LlVlDdv~~~---------~~~~~~~l~~l~~~~~~gs~IliTTR~~~~va~~~~~------~-~~~~~l~~L~ 417 (1007)
..-+|+||++..- ..+.++.+..+.+....+.+||+++.... .-..... . ...+++++++
T Consensus 121 ---~~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~~-~~~~~~~np~L~sR~~~~i~fp~l~ 196 (284)
T TIGR02880 121 ---MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKDR-MDSFFESNPGFSSRVAHHVDFPDYS 196 (284)
T ss_pred ---cCcEEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHH-HHHHHhhCHHHHhhCCcEEEeCCcC
Confidence 2358899998621 12223444422233144556666654322 2111110 0 1578999999
Q ss_pred HHHHHHHHHhhhcc
Q 001843 418 KNESWELFLKKARI 431 (1007)
Q Consensus 418 ~~ea~~Lf~~~a~~ 431 (1007)
.+|-.+++...+-.
T Consensus 197 ~edl~~I~~~~l~~ 210 (284)
T TIGR02880 197 EAELLVIAGLMLKE 210 (284)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999998877643
No 149
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=97.35 E-value=0.0038 Score=69.06 Aligned_cols=175 Identities=14% Similarity=0.168 Sum_probs=98.5
Q ss_pred EEEEEEcCCCChHHHHHHHHHhhhhc-------------ccCCCceEEEEecCCCCCCHHHHHHHHHHHHhhhhhhhccc
Q 001843 274 QVIALIGKAGSGKTTLARIVYNRVYV-------------KRHFTKRAWVHIPIMSMVEDRDVLADILKQIDESLLKVEAT 340 (1007)
Q Consensus 274 ~vi~I~G~gGiGKTtLa~~v~~~~~~-------------~~~F~~~~wv~~s~~~~~~~~~~l~~il~~l~~~~~~~~~~ 340 (1007)
..+-++|..|+||+++|..+++.--- ....+...|+.-. ...+-..+-.+.+...+.. ......
T Consensus 27 ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~--~~~~g~~~~~~~~~~~~~~-~~~~~~ 103 (314)
T PRK07399 27 PAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPT--YQHQGKLITASEAEEAGLK-RKAPPQ 103 (314)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEecc--ccccccccchhhhhhcccc-cccccc
Confidence 68899999999999999988773111 1123445565311 0000000000111111100 000001
Q ss_pred cCHHHHHHHHHHHc-----CCCcEEEEEeCcCccCchhhhhhc-cccCCCCCCcEEEEEcCCCcccccccCCcceeeecC
Q 001843 341 LSAEELMWRITQAL-----DDSTFLIVMENAEHQKSQVWDSFL-GKLCSFTQCGKIIITTSSTEDFVEPLGAAFSTLHVP 414 (1007)
Q Consensus 341 ~~~~~l~~~l~~~L-----~~kr~LlVlDdv~~~~~~~~~~l~-~l~~~~~~gs~IliTTR~~~~va~~~~~~~~~~~l~ 414 (1007)
-..++ ++.+.+.+ .+++-++|+|+++..+....+.+. .+-.. . .+.+|++|.+...+.....+.+..+++.
T Consensus 104 I~id~-ir~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEP-p-~~~fILi~~~~~~Ll~TI~SRcq~i~f~ 180 (314)
T PRK07399 104 IRLEQ-IREIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEP-G-NGTLILIAPSPESLLPTIVSRCQIIPFY 180 (314)
T ss_pred CcHHH-HHHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCC-C-CCeEEEEECChHhCcHHHHhhceEEecC
Confidence 11122 22333333 356669999999866677777777 33333 3 3455555555544777777777999999
Q ss_pred CCCHHHHHHHHHhhhccccccccCCChHHHHHHHHHHHHcCCCchHHHH
Q 001843 415 GLGKNESWELFLKKARIAEDVLQSRSSELIKLKKQILNICDGLPLRVVL 463 (1007)
Q Consensus 415 ~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~ 463 (1007)
++++++..+.+.+....... ......++..++|.|..+..
T Consensus 181 ~l~~~~~~~~L~~~~~~~~~---------~~~~~~l~~~a~Gs~~~al~ 220 (314)
T PRK07399 181 RLSDEQLEQVLKRLGDEEIL---------NINFPELLALAQGSPGAAIA 220 (314)
T ss_pred CCCHHHHHHHHHHhhccccc---------hhHHHHHHHHcCCCHHHHHH
Confidence 99999999999886432111 11135788899999976544
No 150
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=97.35 E-value=0.0013 Score=76.56 Aligned_cols=152 Identities=12% Similarity=0.170 Sum_probs=88.0
Q ss_pred EEEEEEcCCCChHHHHHHHHHhhhhcccCC-C-ceEEEEecCCCCCCHHHHHHHHHHHHhhhhhhhccccCHHHHHHHHH
Q 001843 274 QVIALIGKAGSGKTTLARIVYNRVYVKRHF-T-KRAWVHIPIMSMVEDRDVLADILKQIDESLLKVEATLSAEELMWRIT 351 (1007)
Q Consensus 274 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F-~-~~~wv~~s~~~~~~~~~~l~~il~~l~~~~~~~~~~~~~~~l~~~l~ 351 (1007)
.-+.|+|..|+|||+|++++++ .+.... . .++|++.. +++.++...+... ... .++
T Consensus 131 n~l~lyG~~G~GKTHLl~ai~~--~l~~~~~~~~v~yi~~~--------~f~~~~~~~~~~~--------~~~----~f~ 188 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLLQSIGN--YVVQNEPDLRVMYITSE--------KFLNDLVDSMKEG--------KLN----EFR 188 (440)
T ss_pred CeEEEEcCCCCcHHHHHHHHHH--HHHHhCCCCeEEEEEHH--------HHHHHHHHHHhcc--------cHH----HHH
Confidence 4589999999999999999999 444433 2 35566543 3444554444321 112 233
Q ss_pred HHcCCCcEEEEEeCcCccC-chhh-hhhc----cccCCCCCCcEEEEEcCCC-ccc-------ccccCCcceeeecCCCC
Q 001843 352 QALDDSTFLIVMENAEHQK-SQVW-DSFL----GKLCSFTQCGKIIITTSST-EDF-------VEPLGAAFSTLHVPGLG 417 (1007)
Q Consensus 352 ~~L~~kr~LlVlDdv~~~~-~~~~-~~l~----~l~~~~~~gs~IliTTR~~-~~v-------a~~~~~~~~~~~l~~L~ 417 (1007)
+.+..+.-+||+||+.... ...+ +.+. .+.+ .|..||+||... ..+ ...+... ..+++++.+
T Consensus 189 ~~~~~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~---~~k~iIitsd~~p~~l~~l~~rL~SR~~~g-l~v~i~~pd 264 (440)
T PRK14088 189 EKYRKKVDVLLIDDVQFLIGKTGVQTELFHTFNELHD---SGKQIVICSDREPQKLSEFQDRLVSRFQMG-LVAKLEPPD 264 (440)
T ss_pred HHHHhcCCEEEEechhhhcCcHHHHHHHHHHHHHHHH---cCCeEEEECCCCHHHHHHHHHHHhhHHhcC-ceEeeCCCC
Confidence 3333345589999997321 1111 1222 2332 245788888532 211 1122222 588999999
Q ss_pred HHHHHHHHHhhhccccccccCCChHHHHHHHHHHHHcCCC
Q 001843 418 KNESWELFLKKARIAEDVLQSRSSELIKLKKQILNICDGL 457 (1007)
Q Consensus 418 ~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~~~~I~~~c~Gl 457 (1007)
.++-.+++.+.+..... ..+ +++..-|++.+.|.
T Consensus 265 ~e~r~~IL~~~~~~~~~---~l~---~ev~~~Ia~~~~~~ 298 (440)
T PRK14088 265 EETRKKIARKMLEIEHG---ELP---EEVLNFVAENVDDN 298 (440)
T ss_pred HHHHHHHHHHHHHhcCC---CCC---HHHHHHHHhccccC
Confidence 99999999888754222 112 35566677776654
No 151
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.34 E-value=0.00052 Score=76.93 Aligned_cols=64 Identities=19% Similarity=0.167 Sum_probs=45.5
Q ss_pred CCCCcccEEEecCCCCCCcCCCccccCCCcCcEEeccc-CCCcccCcccccCCCCCEEeecCC-ccccccccc
Q 001843 666 RRLGMLKVLDLEGVYKPMLTNNNALGRLPFLEYLGLRS-TFIDSLPDSTPILFCLATLDVSHT-KVQRLPYAF 736 (1007)
Q Consensus 666 ~~l~~Lr~L~Ls~~~l~~~~lp~~i~~L~~Lr~L~L~~-n~i~~LP~~i~~L~~L~~L~L~~~-~l~~lP~~i 736 (1007)
..+++++.|++++|.+. .+| .+ ..+|+.|.+++ +.++.+|..+ ..+|++|++++| .+..+|..+
T Consensus 49 ~~~~~l~~L~Is~c~L~--sLP-~L--P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~sL 114 (426)
T PRK15386 49 EEARASGRLYIKDCDIE--SLP-VL--PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPESV 114 (426)
T ss_pred HHhcCCCEEEeCCCCCc--ccC-CC--CCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccccccccc
Confidence 56788888888888877 777 22 23588888877 5567777655 357888888877 777777654
No 152
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=97.32 E-value=0.0007 Score=76.81 Aligned_cols=97 Identities=14% Similarity=0.162 Sum_probs=58.7
Q ss_pred EEEEEEcCCCChHHHHHHHHHhhhhcccCCCceEEEEecCCCCCCHHHHHHHHHHHHhhhhhhhccccCHHHHHHHHHHH
Q 001843 274 QVIALIGKAGSGKTTLARIVYNRVYVKRHFTKRAWVHIPIMSMVEDRDVLADILKQIDESLLKVEATLSAEELMWRITQA 353 (1007)
Q Consensus 274 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~l~~il~~l~~~~~~~~~~~~~~~l~~~l~~~ 353 (1007)
+.|.++|++|+|||++|+++++.......|+.+.||+++ +.++..+.+..+.- . ...-........+.+...
T Consensus 195 ~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFH--psySYeDFI~G~rP----~--~vgy~~~~G~f~~~~~~A 266 (459)
T PRK11331 195 KNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFH--QSYSYEDFIQGYRP----N--GVGFRRKDGIFYNFCQQA 266 (459)
T ss_pred CCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeec--ccccHHHHhcccCC----C--CCCeEecCchHHHHHHHH
Confidence 456789999999999999999954444567888999998 87776665532210 0 000000011112222222
Q ss_pred cC--CCcEEEEEeCcCccCchh-hhhhc
Q 001843 354 LD--DSTFLIVMENAEHQKSQV-WDSFL 378 (1007)
Q Consensus 354 L~--~kr~LlVlDdv~~~~~~~-~~~l~ 378 (1007)
-. +++++||+|++...+.+. +..+.
T Consensus 267 ~~~p~~~~vliIDEINRani~kiFGel~ 294 (459)
T PRK11331 267 KEQPEKKYVFIIDEINRANLSKVFGEVM 294 (459)
T ss_pred HhcccCCcEEEEehhhccCHHHhhhhhh
Confidence 22 478999999997544333 34443
No 153
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=97.32 E-value=0.0059 Score=68.19 Aligned_cols=187 Identities=12% Similarity=0.148 Sum_probs=107.0
Q ss_pred EEEEEEcCCCChHHHHHHHHHhhhhcccCCCceEEEEecCCCCCCHHHHHHHHHHHHhhhhhhhccccCHHHHHHHHHHH
Q 001843 274 QVIALIGKAGSGKTTLARIVYNRVYVKRHFTKRAWVHIPIMSMVEDRDVLADILKQIDESLLKVEATLSAEELMWRITQA 353 (1007)
Q Consensus 274 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~l~~il~~l~~~~~~~~~~~~~~~l~~~l~~~ 353 (1007)
.-+-|.|-+|.|||.+...|+.+..-...=..++++.+. .-....+++..|...+... . .......+....+.++
T Consensus 176 gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~--sl~~~~aiF~kI~~~~~q~--~-~s~~~~~~~~~~~~~h 250 (529)
T KOG2227|consen 176 GSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCT--SLTEASAIFKKIFSSLLQD--L-VSPGTGMQHLEKFEKH 250 (529)
T ss_pred cceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeec--cccchHHHHHHHHHHHHHH--h-cCCchhHHHHHHHHHH
Confidence 678899999999999999999953221111234555544 5567888999998888443 1 1222225556666666
Q ss_pred cCCC--cEEEEEeCcCcc---CchhhhhhccccCCCCCCcEEEEE---------cCCCcccccccCCcceeeecCCCCHH
Q 001843 354 LDDS--TFLIVMENAEHQ---KSQVWDSFLGKLCSFTQCGKIIIT---------TSSTEDFVEPLGAAFSTLHVPGLGKN 419 (1007)
Q Consensus 354 L~~k--r~LlVlDdv~~~---~~~~~~~l~~l~~~~~~gs~IliT---------TR~~~~va~~~~~~~~~~~l~~L~~~ 419 (1007)
.... -+|+|+|..+.- +...+-.+..+|. -.++|+|+. -|.-.++-.........+..+|.+.+
T Consensus 251 ~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~--lp~sr~iLiGiANslDlTdR~LprL~~~~~~~P~~l~F~PYTk~ 328 (529)
T KOG2227|consen 251 TKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPK--LPNSRIILIGIANSLDLTDRFLPRLNLDLTIKPKLLVFPPYTKD 328 (529)
T ss_pred HhcccceEEEEechhhHHhhcccceeeeehhccc--CCcceeeeeeehhhhhHHHHHhhhhhhccCCCCceeeecCCCHH
Confidence 6543 589999998732 1111111112222 234454442 22111011111222278889999999
Q ss_pred HHHHHHHhhhccccccccCCChHHHHHHHHHHHHcCCCchHHHHHHHHh
Q 001843 420 ESWELFLKKARIAEDVLQSRSSELIKLKKQILNICDGLPLRVVLLAGLL 468 (1007)
Q Consensus 420 ea~~Lf~~~a~~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~g~~L 468 (1007)
+-.++|..+....... ...+...+-.|++++...|-+=-|+.+.-+.+
T Consensus 329 qI~~Il~~rl~~~~t~-~~~~~Aie~~ArKvaa~SGDlRkaLdv~R~ai 376 (529)
T KOG2227|consen 329 QIVEILQQRLSEESTS-IFLNAAIELCARKVAAPSGDLRKALDVCRRAI 376 (529)
T ss_pred HHHHHHHHHHhccccc-ccchHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence 9999999886543332 12233445555555555555556665555444
No 154
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.29 E-value=0.0014 Score=74.77 Aligned_cols=133 Identities=17% Similarity=0.210 Sum_probs=72.7
Q ss_pred cEEEEEEcCCCChHHHHHHHHHhhhhcccCCCceEEEEecCCCCCCHHHHHHHHHHHHhhhhhhhccccCHHHHHHHHHH
Q 001843 273 TQVIALIGKAGSGKTTLARIVYNRVYVKRHFTKRAWVHIPIMSMVEDRDVLADILKQIDESLLKVEATLSAEELMWRITQ 352 (1007)
Q Consensus 273 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~l~~il~~l~~~~~~~~~~~~~~~l~~~l~~ 352 (1007)
++-+.++|++|.|||+||+++++ .....| +.+..+ .+ .....+ .....+.+.+..
T Consensus 179 pkgvLL~GppGTGKT~LAkalA~--~l~~~f---i~i~~s--------~l----~~k~~g--------e~~~~lr~lf~~ 233 (398)
T PTZ00454 179 PRGVLLYGPPGTGKTMLAKAVAH--HTTATF---IRVVGS--------EF----VQKYLG--------EGPRMVRDVFRL 233 (398)
T ss_pred CceEEEECCCCCCHHHHHHHHHH--hcCCCE---EEEehH--------HH----HHHhcc--------hhHHHHHHHHHH
Confidence 37788999999999999999999 333332 222111 11 111101 111222223333
Q ss_pred HcCCCcEEEEEeCcCcc-------C---chh----hhhhccccCCC--CCCcEEEEEcCCCcccccc-cC--Ccceeeec
Q 001843 353 ALDDSTFLIVMENAEHQ-------K---SQV----WDSFLGKLCSF--TQCGKIIITTSSTEDFVEP-LG--AAFSTLHV 413 (1007)
Q Consensus 353 ~L~~kr~LlVlDdv~~~-------~---~~~----~~~l~~l~~~~--~~gs~IliTTR~~~~va~~-~~--~~~~~~~l 413 (1007)
.....+.+|+||+++.- . ... +..+....+++ ..+..||+||.....+-.. .. -....+.+
T Consensus 234 A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~v~VI~aTN~~d~LDpAllR~GRfd~~I~~ 313 (398)
T PTZ00454 234 ARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEF 313 (398)
T ss_pred HHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCCEEEEEecCCchhCCHHHcCCCcccEEEEe
Confidence 34567899999998621 0 011 11222111111 2456788888766623222 11 11167899
Q ss_pred CCCCHHHHHHHHHhhhc
Q 001843 414 PGLGKNESWELFLKKAR 430 (1007)
Q Consensus 414 ~~L~~~ea~~Lf~~~a~ 430 (1007)
+..+.++-.++|..+..
T Consensus 314 ~~P~~~~R~~Il~~~~~ 330 (398)
T PTZ00454 314 PLPDRRQKRLIFQTITS 330 (398)
T ss_pred CCcCHHHHHHHHHHHHh
Confidence 99999998888886654
No 155
>CHL00181 cbbX CbbX; Provisional
Probab=97.28 E-value=0.0041 Score=67.97 Aligned_cols=135 Identities=14% Similarity=0.103 Sum_probs=70.8
Q ss_pred EEEEEEcCCCChHHHHHHHHHhhhhcccCCCceEEEEecCCCCCCHHHHHHHHHHHHhhhhhhhccccCHHHHHHHHHHH
Q 001843 274 QVIALIGKAGSGKTTLARIVYNRVYVKRHFTKRAWVHIPIMSMVEDRDVLADILKQIDESLLKVEATLSAEELMWRITQA 353 (1007)
Q Consensus 274 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~l~~il~~l~~~~~~~~~~~~~~~l~~~l~~~ 353 (1007)
..+.++|.+|+||||+|+.+++...-.+.-...-|+.++ . .+ +.....+. ........+.+.
T Consensus 60 ~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~--~----~~----l~~~~~g~--------~~~~~~~~l~~a 121 (287)
T CHL00181 60 LHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVT--R----DD----LVGQYIGH--------TAPKTKEVLKKA 121 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEec--H----HH----HHHHHhcc--------chHHHHHHHHHc
Confidence 458899999999999999998842111111122255544 1 11 22222111 111112222222
Q ss_pred cCCCcEEEEEeCcCcc---------Cchhhhhhc-cccCCCCCCcEEEEEcCCCccccccc------CCc-ceeeecCCC
Q 001843 354 LDDSTFLIVMENAEHQ---------KSQVWDSFL-GKLCSFTQCGKIIITTSSTEDFVEPL------GAA-FSTLHVPGL 416 (1007)
Q Consensus 354 L~~kr~LlVlDdv~~~---------~~~~~~~l~-~l~~~~~~gs~IliTTR~~~~va~~~------~~~-~~~~~l~~L 416 (1007)
..-+|+||++..- ..+..+.+. .+.+. ....+||+++.... ..... ... ...+.++++
T Consensus 122 ---~ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~-~~~~~vI~ag~~~~-~~~~~~~np~L~sR~~~~i~F~~~ 196 (287)
T CHL00181 122 ---MGGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQ-RDDLVVIFAGYKDR-MDKFYESNPGLSSRIANHVDFPDY 196 (287)
T ss_pred ---cCCEEEEEccchhccCCCccchHHHHHHHHHHHHhcC-CCCEEEEEeCCcHH-HHHHHhcCHHHHHhCCceEEcCCc
Confidence 2349999999621 122223333 23233 44556666664322 22111 011 157899999
Q ss_pred CHHHHHHHHHhhhcc
Q 001843 417 GKNESWELFLKKARI 431 (1007)
Q Consensus 417 ~~~ea~~Lf~~~a~~ 431 (1007)
+.+|-.+++...+..
T Consensus 197 t~~el~~I~~~~l~~ 211 (287)
T CHL00181 197 TPEELLQIAKIMLEE 211 (287)
T ss_pred CHHHHHHHHHHHHHH
Confidence 999999988877654
No 156
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.27 E-value=0.0012 Score=63.08 Aligned_cols=21 Identities=52% Similarity=0.676 Sum_probs=19.5
Q ss_pred EEEEcCCCChHHHHHHHHHhh
Q 001843 276 IALIGKAGSGKTTLARIVYNR 296 (1007)
Q Consensus 276 i~I~G~gGiGKTtLa~~v~~~ 296 (1007)
|.|+|.+|+||||+|+.+++.
T Consensus 1 ill~G~~G~GKT~l~~~la~~ 21 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQY 21 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHH
T ss_pred CEEECcCCCCeeHHHHHHHhh
Confidence 579999999999999999994
No 157
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=97.24 E-value=0.0034 Score=70.59 Aligned_cols=135 Identities=16% Similarity=0.197 Sum_probs=84.7
Q ss_pred cEEEEEEcCCCChHHHHHHHHHhhhhcccCCCceEEEEecCCCCCCHHHHHHHHHHHHhhhhhhhccccCHHHHHHHHHH
Q 001843 273 TQVIALIGKAGSGKTTLARIVYNRVYVKRHFTKRAWVHIPIMSMVEDRDVLADILKQIDESLLKVEATLSAEELMWRITQ 352 (1007)
Q Consensus 273 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~l~~il~~l~~~~~~~~~~~~~~~l~~~l~~ 352 (1007)
...+.|||..|.|||.|++++.+ ......+....++++ ......+++..+... -.+.+++
T Consensus 113 ~nplfi~G~~GlGKTHLl~Aign--~~~~~~~~a~v~y~~------se~f~~~~v~a~~~~------------~~~~Fk~ 172 (408)
T COG0593 113 YNPLFIYGGVGLGKTHLLQAIGN--EALANGPNARVVYLT------SEDFTNDFVKALRDN------------EMEKFKE 172 (408)
T ss_pred CCcEEEECCCCCCHHHHHHHHHH--HHHhhCCCceEEecc------HHHHHHHHHHHHHhh------------hHHHHHH
Confidence 47899999999999999999999 666666644444443 233444444444332 2334555
Q ss_pred HcCCCcEEEEEeCcCccCc-hhhhh-hc----cccCCCCCCcEEEEEcCCCcc--------cccccCCcceeeecCCCCH
Q 001843 353 ALDDSTFLIVMENAEHQKS-QVWDS-FL----GKLCSFTQCGKIIITTSSTED--------FVEPLGAAFSTLHVPGLGK 418 (1007)
Q Consensus 353 ~L~~kr~LlVlDdv~~~~~-~~~~~-l~----~l~~~~~~gs~IliTTR~~~~--------va~~~~~~~~~~~l~~L~~ 418 (1007)
.. .-=++++||++.-.. +.|+. +. .+... |-.||+|++.... +...+... -++++.+++.
T Consensus 173 ~y--~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~---~kqIvltsdr~P~~l~~~~~rL~SR~~~G-l~~~I~~Pd~ 246 (408)
T COG0593 173 KY--SLDLLLIDDIQFLAGKERTQEEFFHTFNALLEN---GKQIVLTSDRPPKELNGLEDRLRSRLEWG-LVVEIEPPDD 246 (408)
T ss_pred hh--ccCeeeechHhHhcCChhHHHHHHHHHHHHHhc---CCEEEEEcCCCchhhccccHHHHHHHhce-eEEeeCCCCH
Confidence 55 334889999973211 12221 21 44433 4489999975431 22333344 7899999999
Q ss_pred HHHHHHHHhhhcccc
Q 001843 419 NESWELFLKKARIAE 433 (1007)
Q Consensus 419 ~ea~~Lf~~~a~~~~ 433 (1007)
+....++.+.+....
T Consensus 247 e~r~aiL~kka~~~~ 261 (408)
T COG0593 247 ETRLAILRKKAEDRG 261 (408)
T ss_pred HHHHHHHHHHHHhcC
Confidence 999999988765443
No 158
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=97.23 E-value=0.003 Score=74.69 Aligned_cols=154 Identities=12% Similarity=0.194 Sum_probs=86.5
Q ss_pred EEEEEEcCCCChHHHHHHHHHhhhhcccCC--CceEEEEecCCCCCCHHHHHHHHHHHHhhhhhhhccccCHHHHHHHHH
Q 001843 274 QVIALIGKAGSGKTTLARIVYNRVYVKRHF--TKRAWVHIPIMSMVEDRDVLADILKQIDESLLKVEATLSAEELMWRIT 351 (1007)
Q Consensus 274 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F--~~~~wv~~s~~~~~~~~~~l~~il~~l~~~~~~~~~~~~~~~l~~~l~ 351 (1007)
..+.|+|..|+|||.|++++++ .....+ -.+++++.. +++.++...+... .. ..++
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~--~a~~~~~g~~V~Yitae--------ef~~el~~al~~~--------~~----~~f~ 372 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGH--YARRLYPGTRVRYVSSE--------EFTNEFINSIRDG--------KG----DSFR 372 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHH--HHHHhCCCCeEEEeeHH--------HHHHHHHHHHHhc--------cH----HHHH
Confidence 4589999999999999999999 444333 234555443 3333443333221 11 2233
Q ss_pred HHcCCCcEEEEEeCcCccCc-hhhhh-hccccCC-CCCCcEEEEEcCCCc--------ccccccCCcceeeecCCCCHHH
Q 001843 352 QALDDSTFLIVMENAEHQKS-QVWDS-FLGKLCS-FTQCGKIIITTSSTE--------DFVEPLGAAFSTLHVPGLGKNE 420 (1007)
Q Consensus 352 ~~L~~kr~LlVlDdv~~~~~-~~~~~-l~~l~~~-~~~gs~IliTTR~~~--------~va~~~~~~~~~~~l~~L~~~e 420 (1007)
+.+.. -=+|||||+..... +.|.. +..+.+. ...|..|||||.... ++...+... -++++++.+.+.
T Consensus 373 ~~y~~-~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~G-Lvv~I~~PD~Et 450 (617)
T PRK14086 373 RRYRE-MDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWG-LITDVQPPELET 450 (617)
T ss_pred HHhhc-CCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcC-ceEEcCCCCHHH
Confidence 33332 34788999974322 22322 2211111 133557888888631 122333333 788999999999
Q ss_pred HHHHHHhhhccccccccCCChHHHHHHHHHHHHcCCC
Q 001843 421 SWELFLKKARIAEDVLQSRSSELIKLKKQILNICDGL 457 (1007)
Q Consensus 421 a~~Lf~~~a~~~~~~~~~~~~~~~~~~~~I~~~c~Gl 457 (1007)
-.+++.+++....- ..+ ++++.-|++.+.+.
T Consensus 451 R~aIL~kka~~r~l---~l~---~eVi~yLa~r~~rn 481 (617)
T PRK14086 451 RIAILRKKAVQEQL---NAP---PEVLEFIASRISRN 481 (617)
T ss_pred HHHHHHHHHHhcCC---CCC---HHHHHHHHHhccCC
Confidence 99999988765332 112 34455555555433
No 159
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.22 E-value=0.0014 Score=82.45 Aligned_cols=133 Identities=20% Similarity=0.200 Sum_probs=65.4
Q ss_pred EEEEEcCCCChHHHHHHHHHhhhh---cccCC-CceEEEEecCCCCCCHHHHHHHHHHHHhhhhhhhccccCHHHHHHHH
Q 001843 275 VIALIGKAGSGKTTLARIVYNRVY---VKRHF-TKRAWVHIPIMSMVEDRDVLADILKQIDESLLKVEATLSAEELMWRI 350 (1007)
Q Consensus 275 vi~I~G~gGiGKTtLa~~v~~~~~---~~~~F-~~~~wv~~s~~~~~~~~~~l~~il~~l~~~~~~~~~~~~~~~l~~~l 350 (1007)
-+.++|.+|+|||++|..++..-. +.... +..+|. ++ . ...+.+. ....+.+.....+
T Consensus 202 n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~-l~------~-------~~l~ag~----~~~ge~e~rl~~i 263 (821)
T CHL00095 202 NPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVIT-LD------I-------GLLLAGT----KYRGEFEERLKRI 263 (821)
T ss_pred CeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEE-ee------H-------HHHhccC----CCccHHHHHHHHH
Confidence 446999999999999999988421 11111 234443 22 0 0001010 0111122222222
Q ss_pred HHHc-CCCcEEEEEeCcCcc-------Cchhhhhhc-cccCCCCCCcEEEEEcCCCccccc------ccCCcceeeecCC
Q 001843 351 TQAL-DDSTFLIVMENAEHQ-------KSQVWDSFL-GKLCSFTQCGKIIITTSSTEDFVE------PLGAAFSTLHVPG 415 (1007)
Q Consensus 351 ~~~L-~~kr~LlVlDdv~~~-------~~~~~~~l~-~l~~~~~~gs~IliTTR~~~~va~------~~~~~~~~~~l~~ 415 (1007)
.+.+ ..++.+|++|++..- .......+. +.... + .-++|.+|.... ... .+......+.+..
T Consensus 264 ~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~r-g-~l~~IgaTt~~e-y~~~ie~D~aL~rRf~~I~v~e 340 (821)
T CHL00095 264 FDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANILKPALAR-G-ELQCIGATTLDE-YRKHIEKDPALERRFQPVYVGE 340 (821)
T ss_pred HHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHhC-C-CcEEEEeCCHHH-HHHHHhcCHHHHhcceEEecCC
Confidence 2222 356899999999521 011112222 22222 2 234444444332 211 1222226788999
Q ss_pred CCHHHHHHHHHhh
Q 001843 416 LGKNESWELFLKK 428 (1007)
Q Consensus 416 L~~~ea~~Lf~~~ 428 (1007)
.+.++...++...
T Consensus 341 p~~~e~~aILr~l 353 (821)
T CHL00095 341 PSVEETIEILFGL 353 (821)
T ss_pred CCHHHHHHHHHHH
Confidence 9999988887653
No 160
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=97.22 E-value=0.01 Score=74.42 Aligned_cols=28 Identities=32% Similarity=0.700 Sum_probs=23.8
Q ss_pred EEEEEEcCCCChHHHHHHHHHhhhhcccCC
Q 001843 274 QVIALIGKAGSGKTTLARIVYNRVYVKRHF 303 (1007)
Q Consensus 274 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F 303 (1007)
.++.++|++|+|||++|+.+++ .....|
T Consensus 348 ~~lll~GppG~GKT~lAk~iA~--~l~~~~ 375 (775)
T TIGR00763 348 PILCLVGPPGVGKTSLGKSIAK--ALNRKF 375 (775)
T ss_pred ceEEEECCCCCCHHHHHHHHHH--HhcCCe
Confidence 5899999999999999999999 454444
No 161
>PRK06620 hypothetical protein; Validated
Probab=97.21 E-value=0.002 Score=67.23 Aligned_cols=132 Identities=14% Similarity=0.055 Sum_probs=74.8
Q ss_pred EEEEEEcCCCChHHHHHHHHHhhhhcccCCCceEEEEecCCCCCCHHHHHHHHHHHHhhhhhhhccccCHHHHHHHHHHH
Q 001843 274 QVIALIGKAGSGKTTLARIVYNRVYVKRHFTKRAWVHIPIMSMVEDRDVLADILKQIDESLLKVEATLSAEELMWRITQA 353 (1007)
Q Consensus 274 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~l~~il~~l~~~~~~~~~~~~~~~l~~~l~~~ 353 (1007)
+.+.|+|++|+|||+|++.+++.. .. .++... +. . + +.
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~--~~-----~~~~~~----~~-----------------------~-~-------~~ 82 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLS--NA-----YIIKDI----FF-----------------------N-E-------EI 82 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhcc--CC-----EEcchh----hh-----------------------c-h-------hH
Confidence 678999999999999999988832 11 122110 00 0 0 01
Q ss_pred cCCCcEEEEEeCcCccCchhhhhhc-cccCCCCCCcEEEEEcCCCccc------ccccCCcceeeecCCCCHHHHHHHHH
Q 001843 354 LDDSTFLIVMENAEHQKSQVWDSFL-GKLCSFTQCGKIIITTSSTEDF------VEPLGAAFSTLHVPGLGKNESWELFL 426 (1007)
Q Consensus 354 L~~kr~LlVlDdv~~~~~~~~~~l~-~l~~~~~~gs~IliTTR~~~~v------a~~~~~~~~~~~l~~L~~~ea~~Lf~ 426 (1007)
+ ...-++++||+..-.....-.+. .+.. .|..||+|++....- ...+... .++++++++.++-..++.
T Consensus 83 ~-~~~d~lliDdi~~~~~~~lf~l~N~~~e---~g~~ilits~~~p~~l~l~~L~SRl~~g-l~~~l~~pd~~~~~~~l~ 157 (214)
T PRK06620 83 L-EKYNAFIIEDIENWQEPALLHIFNIINE---KQKYLLLTSSDKSRNFTLPDLSSRIKSV-LSILLNSPDDELIKILIF 157 (214)
T ss_pred H-hcCCEEEEeccccchHHHHHHHHHHHHh---cCCEEEEEcCCCccccchHHHHHHHhCC-ceEeeCCCCHHHHHHHHH
Confidence 1 12347889999721211111222 2223 356899999866511 1111222 589999999999888887
Q ss_pred hhhccccccccCCChHHHHHHHHHHHHcCCCc
Q 001843 427 KKARIAEDVLQSRSSELIKLKKQILNICDGLP 458 (1007)
Q Consensus 427 ~~a~~~~~~~~~~~~~~~~~~~~I~~~c~GlP 458 (1007)
+.+....- . -.+++..-|++++.|--
T Consensus 158 k~~~~~~l---~---l~~ev~~~L~~~~~~d~ 183 (214)
T PRK06620 158 KHFSISSV---T---ISRQIIDFLLVNLPREY 183 (214)
T ss_pred HHHHHcCC---C---CCHHHHHHHHHHccCCH
Confidence 76643211 1 12456666777666544
No 162
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=97.21 E-value=0.0061 Score=66.04 Aligned_cols=135 Identities=19% Similarity=0.195 Sum_probs=67.5
Q ss_pred EEEEEEcCCCChHHHHHHHHHhhhhcccCCCceEEEEecCCCCCCHHHHHHHHHHHHhhhhhhhccccCHHHHHHHHHHH
Q 001843 274 QVIALIGKAGSGKTTLARIVYNRVYVKRHFTKRAWVHIPIMSMVEDRDVLADILKQIDESLLKVEATLSAEELMWRITQA 353 (1007)
Q Consensus 274 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~l~~il~~l~~~~~~~~~~~~~~~l~~~l~~~ 353 (1007)
.-+.++|++|+||||+|+.+++...-...-....++.++ . .++ ....-+ .......+.+.+.
T Consensus 43 ~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~--~----~~l----~~~~~g--------~~~~~~~~~~~~a 104 (261)
T TIGR02881 43 LHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVE--R----ADL----VGEYIG--------HTAQKTREVIKKA 104 (261)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEec--H----HHh----hhhhcc--------chHHHHHHHHHhc
Confidence 678899999999999999998832111111122234333 1 111 111100 0111222222222
Q ss_pred cCCCcEEEEEeCcCccC--------chhhhhhc-cccCCCCCCcEEEEEcCCCccccc------ccCCcc-eeeecCCCC
Q 001843 354 LDDSTFLIVMENAEHQK--------SQVWDSFL-GKLCSFTQCGKIIITTSSTEDFVE------PLGAAF-STLHVPGLG 417 (1007)
Q Consensus 354 L~~kr~LlVlDdv~~~~--------~~~~~~l~-~l~~~~~~gs~IliTTR~~~~va~------~~~~~~-~~~~l~~L~ 417 (1007)
..-+|++|+++.-. .+..+.+. .+.+. .....+++++.... ... ...... ..+.+++++
T Consensus 105 ---~~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~-~~~~~vila~~~~~-~~~~~~~~p~L~sRf~~~i~f~~~~ 179 (261)
T TIGR02881 105 ---LGGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDN-RNEFVLILAGYSDE-MDYFLSLNPGLRSRFPISIDFPDYT 179 (261)
T ss_pred ---cCCEEEEechhhhccCCccchHHHHHHHHHHHHhcc-CCCEEEEecCCcch-hHHHHhcChHHHhccceEEEECCCC
Confidence 23488999997311 12333343 33222 23334455543322 211 111111 568899999
Q ss_pred HHHHHHHHHhhhcc
Q 001843 418 KNESWELFLKKARI 431 (1007)
Q Consensus 418 ~~ea~~Lf~~~a~~ 431 (1007)
.++-.+++.+.+..
T Consensus 180 ~~el~~Il~~~~~~ 193 (261)
T TIGR02881 180 VEELMEIAERMVKE 193 (261)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999877654
No 163
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=97.20 E-value=0.0081 Score=66.28 Aligned_cols=97 Identities=9% Similarity=0.107 Sum_probs=68.7
Q ss_pred CCcEEEEEeCcCccCchhhhhhc-cccCCCCCCcEEEEEcCCCcccccccCCcceeeecCCCCHHHHHHHHHhhhccccc
Q 001843 356 DSTFLIVMENAEHQKSQVWDSFL-GKLCSFTQCGKIIITTSSTEDFVEPLGAAFSTLHVPGLGKNESWELFLKKARIAED 434 (1007)
Q Consensus 356 ~kr~LlVlDdv~~~~~~~~~~l~-~l~~~~~~gs~IliTTR~~~~va~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~ 434 (1007)
+++-++|+|+++.-+...-+.+. .+-.- ..++.+|++|.+...+.....+.+..+.+.+++.+++.+.+.....
T Consensus 112 g~~kV~iI~~ae~m~~~AaNaLLKtLEEP-p~~~~fiL~~~~~~~lLpTIrSRCq~i~~~~~~~~~~~~~L~~~~~---- 186 (319)
T PRK08769 112 GIAQVVIVDPADAINRAACNALLKTLEEP-SPGRYLWLISAQPARLPATIRSRCQRLEFKLPPAHEALAWLLAQGV---- 186 (319)
T ss_pred CCcEEEEeccHhhhCHHHHHHHHHHhhCC-CCCCeEEEEECChhhCchHHHhhheEeeCCCcCHHHHHHHHHHcCC----
Confidence 45669999999866666666666 33333 4567777777766547777777778999999999999888865411
Q ss_pred cccCCChHHHHHHHHHHHHcCCCchHHHHHH
Q 001843 435 VLQSRSSELIKLKKQILNICDGLPLRVVLLA 465 (1007)
Q Consensus 435 ~~~~~~~~~~~~~~~I~~~c~GlPLai~~~g 465 (1007)
+ +..+..++..++|.|+....+.
T Consensus 187 -----~---~~~a~~~~~l~~G~p~~A~~~~ 209 (319)
T PRK08769 187 -----S---ERAAQEALDAARGHPGLAAQWL 209 (319)
T ss_pred -----C---hHHHHHHHHHcCCCHHHHHHHh
Confidence 1 2236678999999998765443
No 164
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=97.19 E-value=0.0013 Score=75.56 Aligned_cols=133 Identities=18% Similarity=0.231 Sum_probs=72.6
Q ss_pred EEEEEEcCCCChHHHHHHHHHhhhhcccCCCceEEEEecCCCCCCHHHHHHHHHHHHhhhhhhhccccCHHHHHHHHHHH
Q 001843 274 QVIALIGKAGSGKTTLARIVYNRVYVKRHFTKRAWVHIPIMSMVEDRDVLADILKQIDESLLKVEATLSAEELMWRITQA 353 (1007)
Q Consensus 274 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~l~~il~~l~~~~~~~~~~~~~~~l~~~l~~~ 353 (1007)
+-+.++|.+|+|||++|+++++ .....| +.+..+ . +.....+. ....+...+...
T Consensus 218 ~gVLL~GPPGTGKT~LAraIA~--el~~~f---i~V~~s--e----------L~~k~~Ge--------~~~~vr~lF~~A 272 (438)
T PTZ00361 218 KGVILYGPPGTGKTLLAKAVAN--ETSATF---LRVVGS--E----------LIQKYLGD--------GPKLVRELFRVA 272 (438)
T ss_pred cEEEEECCCCCCHHHHHHHHHH--hhCCCE---EEEecc--h----------hhhhhcch--------HHHHHHHHHHHH
Confidence 6678999999999999999999 444444 222222 1 11111110 111122223333
Q ss_pred cCCCcEEEEEeCcCcc--------Cc--hh----hhhhccccCCC--CCCcEEEEEcCCCccccccc---CCcceeeecC
Q 001843 354 LDDSTFLIVMENAEHQ--------KS--QV----WDSFLGKLCSF--TQCGKIIITTSSTEDFVEPL---GAAFSTLHVP 414 (1007)
Q Consensus 354 L~~kr~LlVlDdv~~~--------~~--~~----~~~l~~l~~~~--~~gs~IliTTR~~~~va~~~---~~~~~~~~l~ 414 (1007)
....+.+|+||+++.. +. .. ...+....+++ ..+.+||+||.....+-..+ +-....+.++
T Consensus 273 ~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~ 352 (438)
T PTZ00361 273 EENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRGDVKVIMATNRIESLDPALIRPGRIDRKIEFP 352 (438)
T ss_pred HhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccCCeEEEEecCChHHhhHHhccCCeeEEEEEeC
Confidence 3467889999998521 00 00 11111111111 23567888887655222221 1111788999
Q ss_pred CCCHHHHHHHHHhhhcc
Q 001843 415 GLGKNESWELFLKKARI 431 (1007)
Q Consensus 415 ~L~~~ea~~Lf~~~a~~ 431 (1007)
..+.++..++|..++..
T Consensus 353 ~Pd~~~R~~Il~~~~~k 369 (438)
T PTZ00361 353 NPDEKTKRRIFEIHTSK 369 (438)
T ss_pred CCCHHHHHHHHHHHHhc
Confidence 99999999999877643
No 165
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.14 E-value=0.0021 Score=72.17 Aligned_cols=31 Identities=19% Similarity=0.226 Sum_probs=14.3
Q ss_pred CCCcEEEeccCCCCcceEEcCCCCccccEeEeec
Q 001843 915 PNLLVLKLWKLNRLRQWRIKEGAMPCLRQLEIRS 948 (1007)
Q Consensus 915 p~L~~L~L~~~~~L~~l~~~~~~~p~L~~L~l~~ 948 (1007)
++|+.|.+.+|..+. +| .+--++|+.|.++.
T Consensus 156 sSLk~L~Is~c~~i~-LP--~~LP~SLk~L~ls~ 186 (426)
T PRK15386 156 PSLKTLSLTGCSNII-LP--EKLPESLQSITLHI 186 (426)
T ss_pred CcccEEEecCCCccc-Cc--ccccccCcEEEecc
Confidence 356666666554321 11 11123566666554
No 166
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.11 E-value=0.0033 Score=79.44 Aligned_cols=23 Identities=35% Similarity=0.499 Sum_probs=19.6
Q ss_pred EEEEEEcCCCChHHHHHHHHHhh
Q 001843 274 QVIALIGKAGSGKTTLARIVYNR 296 (1007)
Q Consensus 274 ~vi~I~G~gGiGKTtLa~~v~~~ 296 (1007)
.-+.++|.+|+|||++|..++..
T Consensus 195 ~n~lL~G~pGvGKT~l~~~la~~ 217 (852)
T TIGR03346 195 NNPVLIGEPGVGKTAIVEGLAQR 217 (852)
T ss_pred CceEEEcCCCCCHHHHHHHHHHH
Confidence 34458999999999999999884
No 167
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=97.11 E-value=0.0029 Score=73.92 Aligned_cols=140 Identities=14% Similarity=0.176 Sum_probs=74.0
Q ss_pred EEEEEEcCCCChHHHHHHHHHhhhhcccC-----CCceEEEEecCCCCCCHHHHHHHHHHHHhhhhhhhccccCHHHHHH
Q 001843 274 QVIALIGKAGSGKTTLARIVYNRVYVKRH-----FTKRAWVHIPIMSMVEDRDVLADILKQIDESLLKVEATLSAEELMW 348 (1007)
Q Consensus 274 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-----F~~~~wv~~s~~~~~~~~~~l~~il~~l~~~~~~~~~~~~~~~l~~ 348 (1007)
+-+.++|++|.|||++|+++++ .+... +....|+.+. .. +++. ...+. .......+..
T Consensus 217 ~GILLyGPPGTGKT~LAKAlA~--eL~~~i~~~~~~~~~fl~v~--~~----eLl~----kyvGe-----te~~ir~iF~ 279 (512)
T TIGR03689 217 KGVLLYGPPGCGKTLIAKAVAN--SLAQRIGAETGDKSYFLNIK--GP----ELLN----KYVGE-----TERQIRLIFQ 279 (512)
T ss_pred cceEEECCCCCcHHHHHHHHHH--hhccccccccCCceeEEecc--ch----hhcc----cccch-----HHHHHHHHHH
Confidence 6689999999999999999999 44333 2234555554 21 1111 11000 0001122222
Q ss_pred HHHHHc-CCCcEEEEEeCcCcc----C---chh-----hhhhccccCCCC--CCcEEEEEcCCCccccccc-C--Cccee
Q 001843 349 RITQAL-DDSTFLIVMENAEHQ----K---SQV-----WDSFLGKLCSFT--QCGKIIITTSSTEDFVEPL-G--AAFST 410 (1007)
Q Consensus 349 ~l~~~L-~~kr~LlVlDdv~~~----~---~~~-----~~~l~~l~~~~~--~gs~IliTTR~~~~va~~~-~--~~~~~ 410 (1007)
..++.. .+++++|+||+++.. . ... ...+....+++. .+..||.||-....+-..+ . -....
T Consensus 280 ~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~~~~~ViVI~ATN~~d~LDpALlRpGRfD~~ 359 (512)
T TIGR03689 280 RAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVESLDNVIVIGASNREDMIDPAILRPGRLDVK 359 (512)
T ss_pred HHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhcccccCCceEEEeccCChhhCCHhhcCccccceE
Confidence 233222 357899999999721 0 111 123332222211 2344555665444121111 1 11167
Q ss_pred eecCCCCHHHHHHHHHhhhc
Q 001843 411 LHVPGLGKNESWELFLKKAR 430 (1007)
Q Consensus 411 ~~l~~L~~~ea~~Lf~~~a~ 430 (1007)
++++..+.++..++|.++..
T Consensus 360 I~~~~Pd~e~r~~Il~~~l~ 379 (512)
T TIGR03689 360 IRIERPDAEAAADIFSKYLT 379 (512)
T ss_pred EEeCCCCHHHHHHHHHHHhh
Confidence 89999999999999998864
No 168
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.11 E-value=0.00017 Score=87.67 Aligned_cols=106 Identities=18% Similarity=0.129 Sum_probs=67.8
Q ss_pred CCCCeEEEEEecCCCC--CCCC--CcCCCcceEEEEeccccCCCCchhhhhhhccccccCCCCcccEEEecCCCCCCcCC
Q 001843 611 PKFAVRRLAANLGSNS--FPYS--SLLSWRLHSYLVFDSRIRGTPAKQIGIILGKCISKRRLGMLKVLDLEGVYKPMLTN 686 (1007)
Q Consensus 611 ~~~~~r~Lsl~~~~~~--~~~~--~~~~~~LRsL~l~~~~~~~~~~~~i~~~l~~~~~~~~l~~Lr~L~Ls~~~l~~~~l 686 (1007)
...+.|+|.+.+...- ..+. ...+|.||+|.+.+-.... . .+...+ .++++|+.||+|+++++ .+
T Consensus 120 sr~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~---~----dF~~lc--~sFpNL~sLDIS~TnI~--nl 188 (699)
T KOG3665|consen 120 SRQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDN---D----DFSQLC--ASFPNLRSLDISGTNIS--NL 188 (699)
T ss_pred HHHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecc---h----hHHHHh--hccCccceeecCCCCcc--Cc
Confidence 3456777777653211 1101 1457888888888765521 0 334556 77888888888888877 45
Q ss_pred CccccCCCcCcEEecccCCCcccC--cccccCCCCCEEeecCCc
Q 001843 687 NNALGRLPFLEYLGLRSTFIDSLP--DSTPILFCLATLDVSHTK 728 (1007)
Q Consensus 687 p~~i~~L~~Lr~L~L~~n~i~~LP--~~i~~L~~L~~L~L~~~~ 728 (1007)
..|++|++|+.|.+++-.+..-+ ..+.+|++|++||+|...
T Consensus 189 -~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~ 231 (699)
T KOG3665|consen 189 -SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDK 231 (699)
T ss_pred -HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccc
Confidence 67788888888888775555322 246678888888887663
No 169
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.09 E-value=0.0023 Score=61.42 Aligned_cols=86 Identities=20% Similarity=0.135 Sum_probs=47.1
Q ss_pred EEEEEEcCCCChHHHHHHHHHhhhhcccCCCceEEEEecCCCCCCHHHHHHHHHHHHhhhhhhhccccCHHHHHHHHHHH
Q 001843 274 QVIALIGKAGSGKTTLARIVYNRVYVKRHFTKRAWVHIPIMSMVEDRDVLADILKQIDESLLKVEATLSAEELMWRITQA 353 (1007)
Q Consensus 274 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~l~~il~~l~~~~~~~~~~~~~~~l~~~l~~~ 353 (1007)
..+.|+|.+|+||||+|+.++. ........++++..+ ........... ..... ..............+...
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~--~~~~~~~~~~~~~~~--~~~~~~~~~~~--~~~~~---~~~~~~~~~~~~~~~~~~ 73 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALAR--ELGPPGGGVIYIDGE--DILEEVLDQLL--LIIVG---GKKASGSGELRLRLALAL 73 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHh--ccCCCCCCEEEECCE--EccccCHHHHH--hhhhh---ccCCCCCHHHHHHHHHHH
Confidence 6889999999999999999999 444433345666554 22221111111 00000 011122222233344444
Q ss_pred cCCC-cEEEEEeCcCc
Q 001843 354 LDDS-TFLIVMENAEH 368 (1007)
Q Consensus 354 L~~k-r~LlVlDdv~~ 368 (1007)
.+.. ..+|++|+++.
T Consensus 74 ~~~~~~~viiiDei~~ 89 (148)
T smart00382 74 ARKLKPDVLILDEITS 89 (148)
T ss_pred HHhcCCCEEEEECCcc
Confidence 4433 48999999983
No 170
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.05 E-value=0.0032 Score=79.32 Aligned_cols=23 Identities=35% Similarity=0.499 Sum_probs=20.0
Q ss_pred EEEEEEcCCCChHHHHHHHHHhh
Q 001843 274 QVIALIGKAGSGKTTLARIVYNR 296 (1007)
Q Consensus 274 ~vi~I~G~gGiGKTtLa~~v~~~ 296 (1007)
.-+.++|.+|+|||+||..++..
T Consensus 200 ~n~lL~G~pGvGKT~l~~~la~~ 222 (857)
T PRK10865 200 NNPVLIGEPGVGKTAIVEGLAQR 222 (857)
T ss_pred CceEEECCCCCCHHHHHHHHHHH
Confidence 34569999999999999999984
No 171
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=97.04 E-value=0.0087 Score=67.01 Aligned_cols=72 Identities=10% Similarity=0.090 Sum_probs=53.1
Q ss_pred CCcEEEEEeCcCccCchhhhhhc-cccCCCCCCcEEEEEcCCCcccccccCCcceeeecCCCCHHHHHHHHHhh
Q 001843 356 DSTFLIVMENAEHQKSQVWDSFL-GKLCSFTQCGKIIITTSSTEDFVEPLGAAFSTLHVPGLGKNESWELFLKK 428 (1007)
Q Consensus 356 ~kr~LlVlDdv~~~~~~~~~~l~-~l~~~~~~gs~IliTTR~~~~va~~~~~~~~~~~l~~L~~~ea~~Lf~~~ 428 (1007)
+++=++|+|+++.-+....+.+. .+-+. ..++.+|++|.+...+.....+.+..+++.++++++..+.+.+.
T Consensus 109 ~~~kvviI~~a~~~~~~a~NaLLK~LEEP-p~~~~~Il~t~~~~~ll~TIrSRc~~i~~~~~~~~~~~~~L~~~ 181 (329)
T PRK08058 109 SNKKVYIIEHADKMTASAANSLLKFLEEP-SGGTTAILLTENKHQILPTILSRCQVVEFRPLPPESLIQRLQEE 181 (329)
T ss_pred cCceEEEeehHhhhCHHHHHHHHHHhcCC-CCCceEEEEeCChHhCcHHHHhhceeeeCCCCCHHHHHHHHHHc
Confidence 45567999999866666677777 44443 55677777777665577766666699999999999998888654
No 172
>CHL00176 ftsH cell division protein; Validated
Probab=97.03 E-value=0.0076 Score=72.85 Aligned_cols=152 Identities=16% Similarity=0.194 Sum_probs=82.5
Q ss_pred EEEEEEcCCCChHHHHHHHHHhhhhcccCCCceEEEEecCCCCCCHHHHHHHHHHHHhhhhhhhccccCHHHHHHHHHHH
Q 001843 274 QVIALIGKAGSGKTTLARIVYNRVYVKRHFTKRAWVHIPIMSMVEDRDVLADILKQIDESLLKVEATLSAEELMWRITQA 353 (1007)
Q Consensus 274 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~l~~il~~l~~~~~~~~~~~~~~~l~~~l~~~ 353 (1007)
+-|.++|++|+|||+||+++++. .... |+.++ . .++ ...... .....+...+...
T Consensus 217 ~gVLL~GPpGTGKT~LAralA~e--~~~p-----~i~is--~----s~f----~~~~~g--------~~~~~vr~lF~~A 271 (638)
T CHL00176 217 KGVLLVGPPGTGKTLLAKAIAGE--AEVP-----FFSIS--G----SEF----VEMFVG--------VGAARVRDLFKKA 271 (638)
T ss_pred ceEEEECCCCCCHHHHHHHHHHH--hCCC-----eeecc--H----HHH----HHHhhh--------hhHHHHHHHHHHH
Confidence 66899999999999999999984 3222 34333 1 011 011000 1122233344555
Q ss_pred cCCCcEEEEEeCcCcc----------Cchhhhhhc-ccc---CCC--CCCcEEEEEcCCCccccccc---CCcceeeecC
Q 001843 354 LDDSTFLIVMENAEHQ----------KSQVWDSFL-GKL---CSF--TQCGKIIITTSSTEDFVEPL---GAAFSTLHVP 414 (1007)
Q Consensus 354 L~~kr~LlVlDdv~~~----------~~~~~~~l~-~l~---~~~--~~gs~IliTTR~~~~va~~~---~~~~~~~~l~ 414 (1007)
....+++|+||+++.- ....+.+.. .+. +++ ..+-.||.||.....+...+ +-....+.+.
T Consensus 272 ~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~ 351 (638)
T CHL00176 272 KENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGVIVIAATNRVDILDAALLRPGRFDRQITVS 351 (638)
T ss_pred hcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCCeeEEEecCchHhhhhhhhccccCceEEEEC
Confidence 5678899999999621 011222222 221 211 23455666666544122111 1111678888
Q ss_pred CCCHHHHHHHHHhhhccccccccCCChHHHHHHHHHHHHcCCC
Q 001843 415 GLGKNESWELFLKKARIAEDVLQSRSSELIKLKKQILNICDGL 457 (1007)
Q Consensus 415 ~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~~~~I~~~c~Gl 457 (1007)
..+.++-.++|+.++..... . .......+++.+.|.
T Consensus 352 lPd~~~R~~IL~~~l~~~~~-----~--~d~~l~~lA~~t~G~ 387 (638)
T CHL00176 352 LPDREGRLDILKVHARNKKL-----S--PDVSLELIARRTPGF 387 (638)
T ss_pred CCCHHHHHHHHHHHHhhccc-----c--hhHHHHHHHhcCCCC
Confidence 89999988999887754221 1 122345667776663
No 173
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.03 E-value=0.0026 Score=78.28 Aligned_cols=133 Identities=17% Similarity=0.179 Sum_probs=66.2
Q ss_pred EEEEEcCCCChHHHHHHHHHhhhhcccC-----CCceEEEEecCCCCCCHHHHHHHHHHHHhhhhhhhccccCHHHHHHH
Q 001843 275 VIALIGKAGSGKTTLARIVYNRVYVKRH-----FTKRAWVHIPIMSMVEDRDVLADILKQIDESLLKVEATLSAEELMWR 349 (1007)
Q Consensus 275 vi~I~G~gGiGKTtLa~~v~~~~~~~~~-----F~~~~wv~~s~~~~~~~~~~l~~il~~l~~~~~~~~~~~~~~~l~~~ 349 (1007)
-+.++|.+|+|||++|+.+++.- +... .++.+|.. . ... ++ .+. ....+.+...+.
T Consensus 209 n~LLvGppGvGKT~lae~la~~i-~~~~vP~~l~~~~~~~l-~------~~~----ll---aG~----~~~Ge~e~rl~~ 269 (758)
T PRK11034 209 NPLLVGESGVGKTAIAEGLAWRI-VQGDVPEVMADCTIYSL-D------IGS----LL---AGT----KYRGDFEKRFKA 269 (758)
T ss_pred CeEEECCCCCCHHHHHHHHHHHH-HhcCCCchhcCCeEEec-c------HHH----Hh---ccc----chhhhHHHHHHH
Confidence 34589999999999999999842 1111 13444421 1 111 11 000 001122222222
Q ss_pred HHHHc-CCCcEEEEEeCcCcc--------Cchhhhhhc-cccCCCCCCcEEEEEcCCCcccccc------cCCcceeeec
Q 001843 350 ITQAL-DDSTFLIVMENAEHQ--------KSQVWDSFL-GKLCSFTQCGKIIITTSSTEDFVEP------LGAAFSTLHV 413 (1007)
Q Consensus 350 l~~~L-~~kr~LlVlDdv~~~--------~~~~~~~l~-~l~~~~~~gs~IliTTR~~~~va~~------~~~~~~~~~l 413 (1007)
+.+.+ +.++.+|++|++..- ...+...+. ++... + .-+||-+|.... .... +......+.+
T Consensus 270 l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~~-g-~i~vIgATt~~E-~~~~~~~D~AL~rRFq~I~v 346 (758)
T PRK11034 270 LLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSS-G-KIRVIGSTTYQE-FSNIFEKDRALARRFQKIDI 346 (758)
T ss_pred HHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHhC-C-CeEEEecCChHH-HHHHhhccHHHHhhCcEEEe
Confidence 22222 346789999999721 112222223 43332 1 233444443222 2111 1112268999
Q ss_pred CCCCHHHHHHHHHhhh
Q 001843 414 PGLGKNESWELFLKKA 429 (1007)
Q Consensus 414 ~~L~~~ea~~Lf~~~a 429 (1007)
++++.++..+++....
T Consensus 347 ~ePs~~~~~~IL~~~~ 362 (758)
T PRK11034 347 TEPSIEETVQIINGLK 362 (758)
T ss_pred CCCCHHHHHHHHHHHH
Confidence 9999999999987653
No 174
>PRK08181 transposase; Validated
Probab=97.02 E-value=0.0013 Score=70.80 Aligned_cols=102 Identities=16% Similarity=0.195 Sum_probs=55.3
Q ss_pred EEEEEEcCCCChHHHHHHHHHhhhhcccCCCceEEEEecCCCCCCHHHHHHHHHHHHhhhhhhhccccCHHHHHHHHHHH
Q 001843 274 QVIALIGKAGSGKTTLARIVYNRVYVKRHFTKRAWVHIPIMSMVEDRDVLADILKQIDESLLKVEATLSAEELMWRITQA 353 (1007)
Q Consensus 274 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~l~~il~~l~~~~~~~~~~~~~~~l~~~l~~~ 353 (1007)
.-+.++|.+|+|||.||.++++. .....-.++|+++. +++..+.... ...+.......
T Consensus 107 ~nlll~Gp~GtGKTHLa~Aia~~--a~~~g~~v~f~~~~--------~L~~~l~~a~--------~~~~~~~~l~~---- 164 (269)
T PRK08181 107 ANLLLFGPPGGGKSHLAAAIGLA--LIENGWRVLFTRTT--------DLVQKLQVAR--------RELQLESAIAK---- 164 (269)
T ss_pred ceEEEEecCCCcHHHHHHHHHHH--HHHcCCceeeeeHH--------HHHHHHHHHH--------hCCcHHHHHHH----
Confidence 45899999999999999999983 33333445666543 3333332211 11122222222
Q ss_pred cCCCcEEEEEeCcCccCchhhh--hhccccCCCCCCcEEEEEcCCCc
Q 001843 354 LDDSTFLIVMENAEHQKSQVWD--SFLGKLCSFTQCGKIIITTSSTE 398 (1007)
Q Consensus 354 L~~kr~LlVlDdv~~~~~~~~~--~l~~l~~~~~~gs~IliTTR~~~ 398 (1007)
+ .+.=||||||+.......|. .+..+.+.--.+..+||||....
T Consensus 165 l-~~~dLLIIDDlg~~~~~~~~~~~Lf~lin~R~~~~s~IiTSN~~~ 210 (269)
T PRK08181 165 L-DKFDLLILDDLAYVTKDQAETSVLFELISARYERRSILITANQPF 210 (269)
T ss_pred H-hcCCEEEEeccccccCCHHHHHHHHHHHHHHHhCCCEEEEcCCCH
Confidence 2 23349999999643333332 22222221011236888888653
No 175
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=96.99 E-value=0.025 Score=58.91 Aligned_cols=79 Identities=15% Similarity=0.243 Sum_probs=48.0
Q ss_pred EEEEEEcCCCChHHHHHHHHHhhhhcccCCCceEEEEecCCCCCCHHHHHHHHHHHHhhhhhhhccccCHHHHHHHHHHH
Q 001843 274 QVIALIGKAGSGKTTLARIVYNRVYVKRHFTKRAWVHIPIMSMVEDRDVLADILKQIDESLLKVEATLSAEELMWRITQA 353 (1007)
Q Consensus 274 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~l~~il~~l~~~~~~~~~~~~~~~l~~~l~~~ 353 (1007)
.-+-+||..|.|||++++++.+. ....= .--|.|. .....+...+.+.++.
T Consensus 53 nnvLL~G~rGtGKSSlVkall~~--y~~~G--LRlIev~------------------------k~~L~~l~~l~~~l~~- 103 (249)
T PF05673_consen 53 NNVLLWGARGTGKSSLVKALLNE--YADQG--LRLIEVS------------------------KEDLGDLPELLDLLRD- 103 (249)
T ss_pred cceEEecCCCCCHHHHHHHHHHH--HhhcC--ceEEEEC------------------------HHHhccHHHHHHHHhc-
Confidence 45678999999999999999983 32211 1122333 1122334444444442
Q ss_pred cCCCcEEEEEeCcCc-cCchhhhhhccccC
Q 001843 354 LDDSTFLIVMENAEH-QKSQVWDSFLGKLC 382 (1007)
Q Consensus 354 L~~kr~LlVlDdv~~-~~~~~~~~l~~l~~ 382 (1007)
+..||+|++||+.. ++...+..++.+.+
T Consensus 104 -~~~kFIlf~DDLsFe~~d~~yk~LKs~Le 132 (249)
T PF05673_consen 104 -RPYKFILFCDDLSFEEGDTEYKALKSVLE 132 (249)
T ss_pred -CCCCEEEEecCCCCCCCcHHHHHHHHHhc
Confidence 35799999999963 34555666664443
No 176
>PRK12377 putative replication protein; Provisional
Probab=96.96 E-value=0.0022 Score=68.18 Aligned_cols=101 Identities=21% Similarity=0.222 Sum_probs=56.1
Q ss_pred EEEEEEcCCCChHHHHHHHHHhhhhcccCCCceEEEEecCCCCCCHHHHHHHHHHHHhhhhhhhccccCHHHHHHHHHHH
Q 001843 274 QVIALIGKAGSGKTTLARIVYNRVYVKRHFTKRAWVHIPIMSMVEDRDVLADILKQIDESLLKVEATLSAEELMWRITQA 353 (1007)
Q Consensus 274 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~l~~il~~l~~~~~~~~~~~~~~~l~~~l~~~ 353 (1007)
..+.++|.+|+|||+||.++++ .+....-.++++++. +++..+-.... ....... +.+.
T Consensus 102 ~~l~l~G~~GtGKThLa~AIa~--~l~~~g~~v~~i~~~--------~l~~~l~~~~~-------~~~~~~~----~l~~ 160 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAAAIGN--RLLAKGRSVIVVTVP--------DVMSRLHESYD-------NGQSGEK----FLQE 160 (248)
T ss_pred CeEEEECCCCCCHHHHHHHHHH--HHHHcCCCeEEEEHH--------HHHHHHHHHHh-------ccchHHH----HHHH
Confidence 5789999999999999999999 444444456777654 23332222211 1111112 2222
Q ss_pred cCCCcEEEEEeCcCccCchhhhh--hccccCC-CCCCcEEEEEcCC
Q 001843 354 LDDSTFLIVMENAEHQKSQVWDS--FLGKLCS-FTQCGKIIITTSS 396 (1007)
Q Consensus 354 L~~kr~LlVlDdv~~~~~~~~~~--l~~l~~~-~~~gs~IliTTR~ 396 (1007)
+ .+-=||||||+..+....|.. +..+.+. ..+.-.+||||-.
T Consensus 161 l-~~~dLLiIDDlg~~~~s~~~~~~l~~ii~~R~~~~~ptiitSNl 205 (248)
T PRK12377 161 L-CKVDLLVLDEIGIQRETKNEQVVLNQIIDRRTASMRSVGMLTNL 205 (248)
T ss_pred h-cCCCEEEEcCCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 2 345599999995434445543 2233222 1223346777753
No 177
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=96.95 E-value=0.021 Score=59.34 Aligned_cols=180 Identities=16% Similarity=0.203 Sum_probs=105.0
Q ss_pred EEEEEEcCCCChHHHHHHHHHhhhhcccCCCceEEEEecCCCCCCHHHHHHHHHHHHhhhhhhhccccCHHHHHHHHHHH
Q 001843 274 QVIALIGKAGSGKTTLARIVYNRVYVKRHFTKRAWVHIPIMSMVEDRDVLADILKQIDESLLKVEATLSAEELMWRITQA 353 (1007)
Q Consensus 274 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~l~~il~~l~~~~~~~~~~~~~~~l~~~l~~~ 353 (1007)
+++.++|.-|.|||++.++... ...+ +.++-+.+. -+..+...+...+...+..+ ...........+.+.
T Consensus 52 g~~~vtGevGsGKTv~~Ral~~--s~~~--d~~~~v~i~-~~~~s~~~~~~ai~~~l~~~-----p~~~~~~~~e~~~~~ 121 (269)
T COG3267 52 GILAVTGEVGSGKTVLRRALLA--SLNE--DQVAVVVID-KPTLSDATLLEAIVADLESQ-----PKVNVNAVLEQIDRE 121 (269)
T ss_pred ceEEEEecCCCchhHHHHHHHH--hcCC--CceEEEEec-CcchhHHHHHHHHHHHhccC-----ccchhHHHHHHHHHH
Confidence 6999999999999999995444 2211 222223333 14556677777888777664 223333333333333
Q ss_pred ----c-CCCc-EEEEEeCcCccCchhhhhhccccC---CCCCCcEEEEEcCCCc------ccccccCCccee-eecCCCC
Q 001843 354 ----L-DDST-FLIVMENAEHQKSQVWDSFLGKLC---SFTQCGKIIITTSSTE------DFVEPLGAAFST-LHVPGLG 417 (1007)
Q Consensus 354 ----L-~~kr-~LlVlDdv~~~~~~~~~~l~~l~~---~~~~gs~IliTTR~~~------~va~~~~~~~~~-~~l~~L~ 417 (1007)
. +++| ..+++|+..+...+..+.++-|-+ .+..--+|+..-.-+- .+.....-...+ |+++|++
T Consensus 122 L~al~~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e~~~R~~ir~~l~P~~ 201 (269)
T COG3267 122 LAALVKKGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLRELEQRIDIRIELPPLT 201 (269)
T ss_pred HHHHHHhCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCcccchhhchHHHHhhhheEEEEEecCCcC
Confidence 3 4667 899999998666667776662222 1011112333211110 011111111134 9999999
Q ss_pred HHHHHHHHHhhhccccccccCCChHHHHHHHHHHHHcCCCchHHHHHHH
Q 001843 418 KNESWELFLKKARIAEDVLQSRSSELIKLKKQILNICDGLPLRVVLLAG 466 (1007)
Q Consensus 418 ~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~g~ 466 (1007)
.++...++..+..+...+ .+--..+....|.....|.|.+|..++.
T Consensus 202 ~~~t~~yl~~~Le~a~~~---~~l~~~~a~~~i~~~sqg~P~lin~~~~ 247 (269)
T COG3267 202 EAETGLYLRHRLEGAGLP---EPLFSDDALLLIHEASQGIPRLINNLAT 247 (269)
T ss_pred hHHHHHHHHHHHhccCCC---cccCChhHHHHHHHHhccchHHHHHHHH
Confidence 998888777766554332 1222345677889999999999987764
No 178
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.95 E-value=0.0018 Score=68.61 Aligned_cols=102 Identities=17% Similarity=0.226 Sum_probs=57.1
Q ss_pred EEEEEEcCCCChHHHHHHHHHhhhhcccCCCceEEEEecCCCCCCHHHHHHHHHHHHhhhhhhhccccCHHHHHHHHHHH
Q 001843 274 QVIALIGKAGSGKTTLARIVYNRVYVKRHFTKRAWVHIPIMSMVEDRDVLADILKQIDESLLKVEATLSAEELMWRITQA 353 (1007)
Q Consensus 274 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~l~~il~~l~~~~~~~~~~~~~~~l~~~l~~~ 353 (1007)
..+.++|.+|+|||+||.++++. ....-..++++++. +++..+-.... . ...+... +.+.
T Consensus 100 ~~~~l~G~~GtGKThLa~aia~~--l~~~g~~v~~it~~--------~l~~~l~~~~~-~-----~~~~~~~----~l~~ 159 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAAICNE--LLLRGKSVLIITVA--------DIMSAMKDTFS-N-----SETSEEQ----LLND 159 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHH--HHhcCCeEEEEEHH--------HHHHHHHHHHh-h-----ccccHHH----HHHH
Confidence 57899999999999999999994 44434456666554 23332222221 0 1112222 2233
Q ss_pred cCCCcEEEEEeCcCccCchhhhh--hccccCC-CCCCcEEEEEcCC
Q 001843 354 LDDSTFLIVMENAEHQKSQVWDS--FLGKLCS-FTQCGKIIITTSS 396 (1007)
Q Consensus 354 L~~kr~LlVlDdv~~~~~~~~~~--l~~l~~~-~~~gs~IliTTR~ 396 (1007)
+. +.=+|||||+.......|.. +..+.+. ....-.+||||-.
T Consensus 160 l~-~~dlLvIDDig~~~~s~~~~~~l~~Ii~~Ry~~~~~tiitSNl 204 (244)
T PRK07952 160 LS-NVDLLVIDEIGVQTESRYEKVIINQIVDRRSSSKRPTGMLTNS 204 (244)
T ss_pred hc-cCCEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCCEEEeCCC
Confidence 44 34488899997655566664 2233221 0223457777764
No 179
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=96.94 E-value=0.0077 Score=74.77 Aligned_cols=138 Identities=13% Similarity=0.268 Sum_probs=69.2
Q ss_pred EEEEEEcCCCChHHHHHHHHHhhhhcccCCCceEEEEecCCCCCCHHHHHHHHHHHHhhhhhhhccccCHHHHHHHHHHH
Q 001843 274 QVIALIGKAGSGKTTLARIVYNRVYVKRHFTKRAWVHIPIMSMVEDRDVLADILKQIDESLLKVEATLSAEELMWRITQA 353 (1007)
Q Consensus 274 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~l~~il~~l~~~~~~~~~~~~~~~l~~~l~~~ 353 (1007)
.++.++|++|+||||+|+.++. .....|-. +.++ ...+..++ .+.. ..........+...+...
T Consensus 350 ~~i~l~GppG~GKTtl~~~ia~--~l~~~~~~---i~~~--~~~d~~~i--------~g~~-~~~~g~~~G~~~~~l~~~ 413 (784)
T PRK10787 350 PILCLVGPPGVGKTSLGQSIAK--ATGRKYVR---MALG--GVRDEAEI--------RGHR-RTYIGSMPGKLIQKMAKV 413 (784)
T ss_pred ceEEEECCCCCCHHHHHHHHHH--HhCCCEEE---EEcC--CCCCHHHh--------ccch-hccCCCCCcHHHHHHHhc
Confidence 6899999999999999999998 44444422 2233 22222111 1100 000000111222333322
Q ss_pred cCCCcEEEEEeCcCccCchh----hhhhc-cccC-------------CCC-CCcEEEEEcCCCcccccccCCcceeeecC
Q 001843 354 LDDSTFLIVMENAEHQKSQV----WDSFL-GKLC-------------SFT-QCGKIIITTSSTEDFVEPLGAAFSTLHVP 414 (1007)
Q Consensus 354 L~~kr~LlVlDdv~~~~~~~----~~~l~-~l~~-------------~~~-~gs~IliTTR~~~~va~~~~~~~~~~~l~ 414 (1007)
....-+|+||.++...... .+.+. .+-. .+. ...-+|.|+.... +...+-....++++.
T Consensus 414 -~~~~~villDEidk~~~~~~g~~~~aLlevld~~~~~~~~d~~~~~~~dls~v~~i~TaN~~~-i~~aLl~R~~ii~~~ 491 (784)
T PRK10787 414 -GVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFVATSNSMN-IPAPLLDRMEVIRLS 491 (784)
T ss_pred -CCCCCEEEEEChhhcccccCCCHHHHHHHHhccccEEEEecccccccccCCceEEEEcCCCCC-CCHHHhcceeeeecC
Confidence 2233478899997432221 11222 1110 001 2233333554333 444444444788999
Q ss_pred CCCHHHHHHHHHhhh
Q 001843 415 GLGKNESWELFLKKA 429 (1007)
Q Consensus 415 ~L~~~ea~~Lf~~~a 429 (1007)
+++.+|-.++.+++.
T Consensus 492 ~~t~eek~~Ia~~~L 506 (784)
T PRK10787 492 GYTEDEKLNIAKRHL 506 (784)
T ss_pred CCCHHHHHHHHHHhh
Confidence 999998888877765
No 180
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=96.92 E-value=7.8e-05 Score=69.02 Aligned_cols=72 Identities=15% Similarity=0.150 Sum_probs=37.2
Q ss_pred CCCCcccEEEecCCCCCCcCCCccccC-CCcCcEEecccCCCcccCcccccCCCCCEEeecCCcccccccccccc
Q 001843 666 RRLGMLKVLDLEGVYKPMLTNNNALGR-LPFLEYLGLRSTFIDSLPDSTPILFCLATLDVSHTKVQRLPYAFWPS 739 (1007)
Q Consensus 666 ~~l~~Lr~L~Ls~~~l~~~~lp~~i~~-L~~Lr~L~L~~n~i~~LP~~i~~L~~L~~L~L~~~~l~~lP~~i~~L 739 (1007)
.+..+|...+|++|.+. .+|..|.. .+.+..|+|++|.|+++|..+..++.|+.|+++.|.+...|.-+..|
T Consensus 50 ~~~~el~~i~ls~N~fk--~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L 122 (177)
T KOG4579|consen 50 SKGYELTKISLSDNGFK--KFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLNAEPRVIAPL 122 (177)
T ss_pred hCCceEEEEecccchhh--hCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCccccchHHHHHH
Confidence 34444555555555555 45544432 23555555555555555555555555555555555555555444444
No 181
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=96.90 E-value=0.00012 Score=67.78 Aligned_cols=91 Identities=18% Similarity=0.189 Sum_probs=77.2
Q ss_pred CCCcceEEEEeccccCCCCchhhhhhhccccccCCCCcccEEEecCCCCCCcCCCccccCCCcCcEEecccCCCcccCcc
Q 001843 633 LSWRLHSYLVFDSRIRGTPAKQIGIILGKCISKRRLGMLKVLDLEGVYKPMLTNNNALGRLPFLEYLGLRSTFIDSLPDS 712 (1007)
Q Consensus 633 ~~~~LRsL~l~~~~~~~~~~~~i~~~l~~~~~~~~l~~Lr~L~Ls~~~l~~~~lp~~i~~L~~Lr~L~L~~n~i~~LP~~ 712 (1007)
...+|....+.+|.+.. +++.+- .+++.++.|+|++|.+. .+|..+..++.||.|++++|.+...|.-
T Consensus 51 ~~~el~~i~ls~N~fk~--------fp~kft--~kf~t~t~lNl~~neis--dvPeE~Aam~aLr~lNl~~N~l~~~p~v 118 (177)
T KOG4579|consen 51 KGYELTKISLSDNGFKK--------FPKKFT--IKFPTATTLNLANNEIS--DVPEELAAMPALRSLNLRFNPLNAEPRV 118 (177)
T ss_pred CCceEEEEecccchhhh--------CCHHHh--hccchhhhhhcchhhhh--hchHHHhhhHHhhhcccccCccccchHH
Confidence 34567777788887753 333444 77889999999999999 8999999999999999999999999999
Q ss_pred cccCCCCCEEeecCCcccccccc
Q 001843 713 TPILFCLATLDVSHTKVQRLPYA 735 (1007)
Q Consensus 713 i~~L~~L~~L~L~~~~l~~lP~~ 735 (1007)
|..|.+|-+|+..+|.+.++|-.
T Consensus 119 i~~L~~l~~Lds~~na~~eid~d 141 (177)
T KOG4579|consen 119 IAPLIKLDMLDSPENARAEIDVD 141 (177)
T ss_pred HHHHHhHHHhcCCCCccccCcHH
Confidence 99999999999999988887764
No 182
>PRK10536 hypothetical protein; Provisional
Probab=96.88 E-value=0.013 Score=61.89 Aligned_cols=119 Identities=16% Similarity=0.248 Sum_probs=64.0
Q ss_pred EEEEEEcCCCChHHHHHHHHHhhhhcccCCCceEEEE--ecCCC-----CCCHHHHHHHHHHHHhhhhhhhccccCHHHH
Q 001843 274 QVIALIGKAGSGKTTLARIVYNRVYVKRHFTKRAWVH--IPIMS-----MVEDRDVLADILKQIDESLLKVEATLSAEEL 346 (1007)
Q Consensus 274 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~--~s~~~-----~~~~~~~l~~il~~l~~~~~~~~~~~~~~~l 346 (1007)
.++.+.|..|.|||+||.+++.+....+.|+.++-+. +...+ +-+..+-+.-.+.-+...+... ......
T Consensus 75 ~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI~RP~v~~ge~LGfLPG~~~eK~~p~~~pi~D~L~~~---~~~~~~ 151 (262)
T PRK10536 75 QLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIVTRPVLQADEDLGFLPGDIAEKFAPYFRPVYDVLVRR---LGASFM 151 (262)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEEeCCCCCchhhhCcCCCCHHHHHHHHHHHHHHHHHHH---hChHHH
Confidence 6899999999999999999988533345555443331 11000 1123333333333322221110 011111
Q ss_pred HHHH-----------HHHcCCCcE---EEEEeCcCccCchhhhhhccccCCCCCCcEEEEEcCCCc
Q 001843 347 MWRI-----------TQALDDSTF---LIVMENAEHQKSQVWDSFLGKLCSFTQCGKIIITTSSTE 398 (1007)
Q Consensus 347 ~~~l-----------~~~L~~kr~---LlVlDdv~~~~~~~~~~l~~l~~~~~~gs~IliTTR~~~ 398 (1007)
...+ -.+++++.+ +||+|.+.+.+..+...+. ..- +.+|++|+|--..+
T Consensus 152 ~~~~~~~~~~Iei~~l~ymRGrtl~~~~vIvDEaqn~~~~~~k~~l--tR~-g~~sk~v~~GD~~Q 214 (262)
T PRK10536 152 QYCLRPEIGKVEIAPFAYMRGRTFENAVVILDEAQNVTAAQMKMFL--TRL-GENVTVIVNGDITQ 214 (262)
T ss_pred HHHHHhccCcEEEecHHHhcCCcccCCEEEEechhcCCHHHHHHHH--hhc-CCCCEEEEeCChhh
Confidence 1111 134566655 9999999866665555544 222 77899998765443
No 183
>PRK08118 topology modulation protein; Reviewed
Probab=96.84 E-value=0.00063 Score=68.11 Aligned_cols=36 Identities=39% Similarity=0.653 Sum_probs=28.5
Q ss_pred EEEEEEcCCCChHHHHHHHHHhhhhcc-cCCCceEEE
Q 001843 274 QVIALIGKAGSGKTTLARIVYNRVYVK-RHFTKRAWV 309 (1007)
Q Consensus 274 ~vi~I~G~gGiGKTtLa~~v~~~~~~~-~~F~~~~wv 309 (1007)
+-|.|+|++|+||||||+.+++...+. -+||..+|-
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~~ 38 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFWK 38 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCceecchhhcc
Confidence 468999999999999999999954443 457777753
No 184
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=96.81 E-value=0.0028 Score=66.39 Aligned_cols=35 Identities=34% Similarity=0.594 Sum_probs=30.3
Q ss_pred EEEEEEcCCCChHHHHHHHHHhhhhcccCCCceEEEE
Q 001843 274 QVIALIGKAGSGKTTLARIVYNRVYVKRHFTKRAWVH 310 (1007)
Q Consensus 274 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~ 310 (1007)
-.++|+|..|.|||||++.+.. .....|+.+++++
T Consensus 14 fr~viIG~sGSGKT~li~~lL~--~~~~~f~~I~l~t 48 (241)
T PF04665_consen 14 FRMVIIGKSGSGKTTLIKSLLY--YLRHKFDHIFLIT 48 (241)
T ss_pred ceEEEECCCCCCHHHHHHHHHH--hhcccCCEEEEEe
Confidence 4678999999999999999998 5788898877775
No 185
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=96.80 E-value=0.031 Score=61.87 Aligned_cols=94 Identities=11% Similarity=0.111 Sum_probs=67.4
Q ss_pred CCcEEEEEeCcCccCchhhhhhc-cccCCCCCCcEEEEEcCCCcccccccCCcceeeecCCCCHHHHHHHHHhhhccccc
Q 001843 356 DSTFLIVMENAEHQKSQVWDSFL-GKLCSFTQCGKIIITTSSTEDFVEPLGAAFSTLHVPGLGKNESWELFLKKARIAED 434 (1007)
Q Consensus 356 ~kr~LlVlDdv~~~~~~~~~~l~-~l~~~~~~gs~IliTTR~~~~va~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~ 434 (1007)
+++=++|+|+++.-+....+.+. .+-.. ..++.+|++|.+...+.....+.+..+.+.++++++..+.+......
T Consensus 106 g~~KV~iI~~a~~m~~~AaNaLLKtLEEP-p~~~~fiL~t~~~~~llpTI~SRC~~~~~~~~~~~~~~~~L~~~~~~--- 181 (325)
T PRK06871 106 GGNKVVYIQGAERLTEAAANALLKTLEEP-RPNTYFLLQADLSAALLPTIYSRCQTWLIHPPEEQQALDWLQAQSSA--- 181 (325)
T ss_pred CCceEEEEechhhhCHHHHHHHHHHhcCC-CCCeEEEEEECChHhCchHHHhhceEEeCCCCCHHHHHHHHHHHhcc---
Confidence 55568889999877777777777 44333 55677777777765477666666689999999999999888775421
Q ss_pred cccCCChHHHHHHHHHHHHcCCCchHH
Q 001843 435 VLQSRSSELIKLKKQILNICDGLPLRV 461 (1007)
Q Consensus 435 ~~~~~~~~~~~~~~~I~~~c~GlPLai 461 (1007)
. ...+...+..++|.|+..
T Consensus 182 -----~---~~~~~~~~~l~~g~p~~A 200 (325)
T PRK06871 182 -----E---ISEILTALRINYGRPLLA 200 (325)
T ss_pred -----C---hHHHHHHHHHcCCCHHHH
Confidence 1 113556788899999643
No 186
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=96.80 E-value=0.01 Score=59.13 Aligned_cols=119 Identities=13% Similarity=0.219 Sum_probs=71.3
Q ss_pred EEEEEEcCCCChHHHHHHHHHhhhhcc------------------cCCCceEEEEecCCCCCCHHHHHHHHHHHHhhhhh
Q 001843 274 QVIALIGKAGSGKTTLARIVYNRVYVK------------------RHFTKRAWVHIPIMSMVEDRDVLADILKQIDESLL 335 (1007)
Q Consensus 274 ~vi~I~G~gGiGKTtLa~~v~~~~~~~------------------~~F~~~~wv~~s~~~~~~~~~~l~~il~~l~~~~~ 335 (1007)
..+-++|..|+||+|+|..+++.-.-. .......|+.-. ...
T Consensus 20 ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~--~~~------------------ 79 (162)
T PF13177_consen 20 HALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPD--KKK------------------ 79 (162)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETT--TSS------------------
T ss_pred eeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEecc--ccc------------------
Confidence 567899999999999999988732111 123334444322 110
Q ss_pred hhccccCHHHHHHHHHHHc-----CCCcEEEEEeCcCccCchhhhhhc-cccCCCCCCcEEEEEcCCCcccccccCCcce
Q 001843 336 KVEATLSAEELMWRITQAL-----DDSTFLIVMENAEHQKSQVWDSFL-GKLCSFTQCGKIIITTSSTEDFVEPLGAAFS 409 (1007)
Q Consensus 336 ~~~~~~~~~~l~~~l~~~L-----~~kr~LlVlDdv~~~~~~~~~~l~-~l~~~~~~gs~IliTTR~~~~va~~~~~~~~ 409 (1007)
.....++.. .+.+.+ .+++=++|+||++..+.+.++.++ .+-+. ..++++|++|++...+.....+.+.
T Consensus 80 ---~~i~i~~ir-~i~~~~~~~~~~~~~KviiI~~ad~l~~~a~NaLLK~LEep-p~~~~fiL~t~~~~~il~TI~SRc~ 154 (162)
T PF13177_consen 80 ---KSIKIDQIR-EIIEFLSLSPSEGKYKVIIIDEADKLTEEAQNALLKTLEEP-PENTYFILITNNPSKILPTIRSRCQ 154 (162)
T ss_dssp ---SSBSHHHHH-HHHHHCTSS-TTSSSEEEEEETGGGS-HHHHHHHHHHHHST-TTTEEEEEEES-GGGS-HHHHTTSE
T ss_pred ---chhhHHHHH-HHHHHHHHHHhcCCceEEEeehHhhhhHHHHHHHHHHhcCC-CCCEEEEEEECChHHChHHHHhhce
Confidence 011222222 333333 235569999999988888888888 44444 6688999999988767777666667
Q ss_pred eeecCCCC
Q 001843 410 TLHVPGLG 417 (1007)
Q Consensus 410 ~~~l~~L~ 417 (1007)
.+.+++|+
T Consensus 155 ~i~~~~ls 162 (162)
T PF13177_consen 155 VIRFRPLS 162 (162)
T ss_dssp EEEE----
T ss_pred EEecCCCC
Confidence 88877764
No 187
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=96.78 E-value=0.0076 Score=61.01 Aligned_cols=22 Identities=27% Similarity=0.357 Sum_probs=20.1
Q ss_pred EEEEEEcCCCChHHHHHHHHHh
Q 001843 274 QVIALIGKAGSGKTTLARIVYN 295 (1007)
Q Consensus 274 ~vi~I~G~gGiGKTtLa~~v~~ 295 (1007)
.-+.|.||+|+||||-+..+++
T Consensus 49 P~liisGpPG~GKTTsi~~LAr 70 (333)
T KOG0991|consen 49 PNLIISGPPGTGKTTSILCLAR 70 (333)
T ss_pred CceEeeCCCCCchhhHHHHHHH
Confidence 6678999999999999999888
No 188
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.77 E-value=0.0043 Score=63.74 Aligned_cols=91 Identities=20% Similarity=0.237 Sum_probs=51.5
Q ss_pred cEEEEEEcCCCChHHHHHHHHHhhhhcccCCCceEEEEecCCCCCCHHHHHHHHHHHHhhhhhhhccccCHHHHHHHHHH
Q 001843 273 TQVIALIGKAGSGKTTLARIVYNRVYVKRHFTKRAWVHIPIMSMVEDRDVLADILKQIDESLLKVEATLSAEELMWRITQ 352 (1007)
Q Consensus 273 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~l~~il~~l~~~~~~~~~~~~~~~l~~~l~~ 352 (1007)
++||.++|+.|+||||.+-+++.. ...+-..+..++... ......+-++..++.++.+........+.........+
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~--~~~~~~~v~lis~D~-~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~ 77 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAAR--LKLKGKKVALISADT-YRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALE 77 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHH--HHHTT--EEEEEEST-SSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHH--HhhccccceeecCCC-CCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHH
Confidence 489999999999999888888774 333344577777641 22345666777777777542111122233333333222
Q ss_pred HcCCCc-EEEEEeCc
Q 001843 353 ALDDST-FLIVMENA 366 (1007)
Q Consensus 353 ~L~~kr-~LlVlDdv 366 (1007)
.++.++ =+|++|=.
T Consensus 78 ~~~~~~~D~vlIDT~ 92 (196)
T PF00448_consen 78 KFRKKGYDLVLIDTA 92 (196)
T ss_dssp HHHHTTSSEEEEEE-
T ss_pred HHhhcCCCEEEEecC
Confidence 233333 36777754
No 189
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=96.76 E-value=0.0057 Score=72.73 Aligned_cols=152 Identities=17% Similarity=0.158 Sum_probs=80.4
Q ss_pred EEEEEEcCCCChHHHHHHHHHhhhhcccCCCceEEEEecCCCCCCHHHHHHHHHHHHhhhhhhhccccCHHHHHHHHHHH
Q 001843 274 QVIALIGKAGSGKTTLARIVYNRVYVKRHFTKRAWVHIPIMSMVEDRDVLADILKQIDESLLKVEATLSAEELMWRITQA 353 (1007)
Q Consensus 274 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~l~~il~~l~~~~~~~~~~~~~~~l~~~l~~~ 353 (1007)
+-+.++|++|+|||++|+.+++. .... ++.++ ..++ ..... ......+...+...
T Consensus 89 ~giLL~GppGtGKT~la~alA~~--~~~~-----~~~i~------~~~~----~~~~~--------g~~~~~l~~~f~~a 143 (495)
T TIGR01241 89 KGVLLVGPPGTGKTLLAKAVAGE--AGVP-----FFSIS------GSDF----VEMFV--------GVGASRVRDLFEQA 143 (495)
T ss_pred CcEEEECCCCCCHHHHHHHHHHH--cCCC-----eeecc------HHHH----HHHHh--------cccHHHHHHHHHHH
Confidence 55889999999999999999984 3222 23333 1111 11110 11222333344444
Q ss_pred cCCCcEEEEEeCcCccC----------chhhhhhc-ccc---CCC--CCCcEEEEEcCCCccccccc----CCcceeeec
Q 001843 354 LDDSTFLIVMENAEHQK----------SQVWDSFL-GKL---CSF--TQCGKIIITTSSTEDFVEPL----GAAFSTLHV 413 (1007)
Q Consensus 354 L~~kr~LlVlDdv~~~~----------~~~~~~l~-~l~---~~~--~~gs~IliTTR~~~~va~~~----~~~~~~~~l 413 (1007)
....+.+|+||+++.-. ...+.... .+. +++ ..+-.||.||.....+-..+ .-+ ..+.+
T Consensus 144 ~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~~v~vI~aTn~~~~ld~al~r~gRfd-~~i~i 222 (495)
T TIGR01241 144 KKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNTGVIVIAATNRPDVLDPALLRPGRFD-RQVVV 222 (495)
T ss_pred HhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCCCeEEEEecCChhhcCHHHhcCCcce-EEEEc
Confidence 45678899999996210 11122221 111 111 23445555665543122211 122 77889
Q ss_pred CCCCHHHHHHHHHhhhccccccccCCChHHHHHHHHHHHHcCCCc
Q 001843 414 PGLGKNESWELFLKKARIAEDVLQSRSSELIKLKKQILNICDGLP 458 (1007)
Q Consensus 414 ~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~~~~I~~~c~GlP 458 (1007)
+..+.++-.++|..+...... .+ ......+++.+.|.-
T Consensus 223 ~~Pd~~~R~~il~~~l~~~~~-----~~--~~~l~~la~~t~G~s 260 (495)
T TIGR01241 223 DLPDIKGREEILKVHAKNKKL-----AP--DVDLKAVARRTPGFS 260 (495)
T ss_pred CCCCHHHHHHHHHHHHhcCCC-----Cc--chhHHHHHHhCCCCC
Confidence 999998888888877643221 11 112346777777644
No 190
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=96.71 E-value=0.0017 Score=65.62 Aligned_cols=100 Identities=24% Similarity=0.389 Sum_probs=52.2
Q ss_pred EEEEEEcCCCChHHHHHHHHHhhhhcccCCCceEEEEecCCCCCCHHHHHHHHHHHHhhhhhhhccccCHHHHHHHHHHH
Q 001843 274 QVIALIGKAGSGKTTLARIVYNRVYVKRHFTKRAWVHIPIMSMVEDRDVLADILKQIDESLLKVEATLSAEELMWRITQA 353 (1007)
Q Consensus 274 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~l~~il~~l~~~~~~~~~~~~~~~l~~~l~~~ 353 (1007)
.-+.++|..|+|||.||.++.+. .-.+=..+.|+++. +++..+... ..........+.
T Consensus 48 ~~l~l~G~~G~GKThLa~ai~~~--~~~~g~~v~f~~~~------------~L~~~l~~~----~~~~~~~~~~~~---- 105 (178)
T PF01695_consen 48 ENLILYGPPGTGKTHLAVAIANE--AIRKGYSVLFITAS------------DLLDELKQS----RSDGSYEELLKR---- 105 (178)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHH--HHHTT--EEEEEHH------------HHHHHHHCC----HCCTTHCHHHHH----
T ss_pred eEEEEEhhHhHHHHHHHHHHHHH--hccCCcceeEeecC------------ceecccccc----ccccchhhhcCc----
Confidence 56899999999999999999984 33333346777655 344444332 111122222222
Q ss_pred cCCCcEEEEEeCcCccCchhhhh--hccccCC-CCCCcEEEEEcCCC
Q 001843 354 LDDSTFLIVMENAEHQKSQVWDS--FLGKLCS-FTQCGKIIITTSST 397 (1007)
Q Consensus 354 L~~kr~LlVlDdv~~~~~~~~~~--l~~l~~~-~~~gs~IliTTR~~ 397 (1007)
+. +-=||||||+-.+....|.. +..+.+. ..++ .+||||...
T Consensus 106 l~-~~dlLilDDlG~~~~~~~~~~~l~~ii~~R~~~~-~tIiTSN~~ 150 (178)
T PF01695_consen 106 LK-RVDLLILDDLGYEPLSEWEAELLFEIIDERYERK-PTIITSNLS 150 (178)
T ss_dssp HH-TSSCEEEETCTSS---HHHHHCTHHHHHHHHHT--EEEEEESS-
T ss_pred cc-cccEecccccceeeecccccccchhhhhHhhccc-CeEeeCCCc
Confidence 22 23488899997544444432 1122211 0223 588888754
No 191
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.69 E-value=0.029 Score=64.39 Aligned_cols=118 Identities=20% Similarity=0.268 Sum_probs=75.3
Q ss_pred EEEEEcCCCChHHHHHHHHHhhhhcccCCCceEEEEecCCCCCCHHHHHHHHHHHHhhhhhhhccccCHHHHHHHHHHHc
Q 001843 275 VIALIGKAGSGKTTLARIVYNRVYVKRHFTKRAWVHIPIMSMVEDRDVLADILKQIDESLLKVEATLSAEELMWRITQAL 354 (1007)
Q Consensus 275 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~l~~il~~l~~~~~~~~~~~~~~~l~~~l~~~L 354 (1007)
++.|.|+-++||||+++.+.. ...+. .+++... .......-+.+.... +...-
T Consensus 39 i~~i~GpR~~GKTtll~~l~~--~~~~~---~iy~~~~--d~~~~~~~l~d~~~~--------------------~~~~~ 91 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIK--GLLEE---IIYINFD--DLRLDRIELLDLLRA--------------------YIELK 91 (398)
T ss_pred EEEEECCccccHHHHHHHHHh--hCCcc---eEEEEec--chhcchhhHHHHHHH--------------------HHHhh
Confidence 999999999999999966665 22222 5555543 111111111111111 11111
Q ss_pred CCCcEEEEEeCcCccCchhhhhhc-cccCCCCCCcEEEEEcCCCcc----cccccCCcceeeecCCCCHHHHHH
Q 001843 355 DDSTFLIVMENAEHQKSQVWDSFL-GKLCSFTQCGKIIITTSSTED----FVEPLGAAFSTLHVPGLGKNESWE 423 (1007)
Q Consensus 355 ~~kr~LlVlDdv~~~~~~~~~~l~-~l~~~~~~gs~IliTTR~~~~----va~~~~~~~~~~~l~~L~~~ea~~ 423 (1007)
..++.+|+||.|. ....|.... .+.+. +.. +|+||+-+..- .+....+....+++-||+..|...
T Consensus 92 ~~~~~yifLDEIq--~v~~W~~~lk~l~d~-~~~-~v~itgsss~ll~~~~~~~L~GR~~~~~l~PlSF~Efl~ 161 (398)
T COG1373 92 EREKSYIFLDEIQ--NVPDWERALKYLYDR-GNL-DVLITGSSSSLLSKEISESLAGRGKDLELYPLSFREFLK 161 (398)
T ss_pred ccCCceEEEeccc--CchhHHHHHHHHHcc-ccc-eEEEECCchhhhccchhhhcCCCceeEEECCCCHHHHHh
Confidence 1278899999999 888898877 88777 555 89998887651 223333334889999999999865
No 192
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=96.67 E-value=4.6e-05 Score=87.92 Aligned_cols=123 Identities=21% Similarity=0.079 Sum_probs=70.0
Q ss_pred cccEEEecCCCCCCcCCCccccCCCcCcEEecccCCCcccCcccccCCCCCEEeecCCccccccc---cccccceecccc
Q 001843 670 MLKVLDLEGVYKPMLTNNNALGRLPFLEYLGLRSTFIDSLPDSTPILFCLATLDVSHTKVQRLPY---AFWPSRHLYLNW 746 (1007)
Q Consensus 670 ~Lr~L~Ls~~~l~~~~lp~~i~~L~~Lr~L~L~~n~i~~LP~~i~~L~~L~~L~L~~~~l~~lP~---~i~~Lr~L~l~~ 746 (1007)
.|.+.+.++|.+. .+-.++.-+++|+.|+|++|++...- .+..|++|++|||++|.+..+|. .-.+|..|.+.
T Consensus 165 ~L~~a~fsyN~L~--~mD~SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~lr- 240 (1096)
T KOG1859|consen 165 KLATASFSYNRLV--LMDESLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLNLR- 240 (1096)
T ss_pred hHhhhhcchhhHH--hHHHHHHHHHHhhhhccchhhhhhhH-HHHhcccccccccccchhccccccchhhhhheeeeec-
Confidence 4555666666655 44455666667777777777766655 56666777777777776666554 22234556655
Q ss_pred cccccccccccccccCcCCCccccceeeCCCcccChHhhhcCCCCCeEEeeecC
Q 001843 747 IFLATNVFRHPQFVKWETSLQTLWGLCIKADEVQSLDYFRRLTSLRKLGLKCSS 800 (1007)
Q Consensus 747 ~~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~ 800 (1007)
+|. . .-..++.+|.+|+.|+..+.--.....+..++.|..|+.|.+.+|.
T Consensus 241 --nN~-l-~tL~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNP 290 (1096)
T KOG1859|consen 241 --NNA-L-TTLRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNP 290 (1096)
T ss_pred --ccH-H-HhhhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCc
Confidence 332 1 2223456666666664332211112244456666677777777665
No 193
>PRK08939 primosomal protein DnaI; Reviewed
Probab=96.67 E-value=0.006 Score=67.24 Aligned_cols=101 Identities=18% Similarity=0.294 Sum_probs=60.0
Q ss_pred EEEEEEcCCCChHHHHHHHHHhhhhcccCCCceEEEEecCCCCCCHHHHHHHHHHHHhhhhhhhccccCHHHHHHHHHHH
Q 001843 274 QVIALIGKAGSGKTTLARIVYNRVYVKRHFTKRAWVHIPIMSMVEDRDVLADILKQIDESLLKVEATLSAEELMWRITQA 353 (1007)
Q Consensus 274 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~l~~il~~l~~~~~~~~~~~~~~~l~~~l~~~ 353 (1007)
+-+.++|..|+|||.||.++++. ....-..+.++++. +++.++...... .+.... + +.
T Consensus 157 ~gl~L~G~~G~GKThLa~Aia~~--l~~~g~~v~~~~~~--------~l~~~lk~~~~~--------~~~~~~---l-~~ 214 (306)
T PRK08939 157 KGLYLYGDFGVGKSYLLAAIANE--LAKKGVSSTLLHFP--------EFIRELKNSISD--------GSVKEK---I-DA 214 (306)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH--HHHcCCCEEEEEHH--------HHHHHHHHHHhc--------CcHHHH---H-HH
Confidence 67899999999999999999995 43333345677654 333443333221 122222 2 22
Q ss_pred cCCCcEEEEEeCcCccCchhhhh--hc-cccCC-CCCCcEEEEEcCCC
Q 001843 354 LDDSTFLIVMENAEHQKSQVWDS--FL-GKLCS-FTQCGKIIITTSST 397 (1007)
Q Consensus 354 L~~kr~LlVlDdv~~~~~~~~~~--l~-~l~~~-~~~gs~IliTTR~~ 397 (1007)
+ .+-=||||||+..+....|.. +. .+.+. ...+-.+|+||--.
T Consensus 215 l-~~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSNl~ 261 (306)
T PRK08939 215 V-KEAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSNFD 261 (306)
T ss_pred h-cCCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECCCC
Confidence 2 234599999997666777753 44 34321 12345678887643
No 194
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=96.67 E-value=0.012 Score=70.34 Aligned_cols=22 Identities=41% Similarity=0.650 Sum_probs=19.9
Q ss_pred EEEEEEcCCCChHHHHHHHHHh
Q 001843 274 QVIALIGKAGSGKTTLARIVYN 295 (1007)
Q Consensus 274 ~vi~I~G~gGiGKTtLa~~v~~ 295 (1007)
.-|.|+|.+|+|||++|+.+++
T Consensus 87 ~~vLi~Ge~GtGKt~lAr~i~~ 108 (531)
T TIGR02902 87 QHVIIYGPPGVGKTAAARLVLE 108 (531)
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4567999999999999999987
No 195
>PRK06835 DNA replication protein DnaC; Validated
Probab=96.64 E-value=0.0039 Score=69.23 Aligned_cols=37 Identities=16% Similarity=0.249 Sum_probs=28.4
Q ss_pred EEEEEEcCCCChHHHHHHHHHhhhhcccCCCceEEEEec
Q 001843 274 QVIALIGKAGSGKTTLARIVYNRVYVKRHFTKRAWVHIP 312 (1007)
Q Consensus 274 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s 312 (1007)
.-+.++|..|+|||.||.++++. +...-..++++++.
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~--l~~~g~~V~y~t~~ 220 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKE--LLDRGKSVIYRTAD 220 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHH--HHHCCCeEEEEEHH
Confidence 56899999999999999999994 43333356677654
No 196
>PRK10865 protein disaggregation chaperone; Provisional
Probab=96.63 E-value=0.0099 Score=74.94 Aligned_cols=92 Identities=14% Similarity=0.272 Sum_probs=50.0
Q ss_pred EEEEEEcCCCChHHHHHHHHHhhhhcccCCCceEEEEecCCCCCCHHHHHHHHHHHHhhhhhhhccccCHHHHHHHHHHH
Q 001843 274 QVIALIGKAGSGKTTLARIVYNRVYVKRHFTKRAWVHIPIMSMVEDRDVLADILKQIDESLLKVEATLSAEELMWRITQA 353 (1007)
Q Consensus 274 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~l~~il~~l~~~~~~~~~~~~~~~l~~~l~~~ 353 (1007)
.++.++|+.|+|||++|+.+++ ..-..-...+.+.++ . +........+ ++.+ +.....+. ...+.+.
T Consensus 599 ~~~Lf~Gp~G~GKT~lA~aLa~--~l~~~~~~~i~id~s--e-~~~~~~~~~L---iG~~--pgy~g~~~---~g~l~~~ 665 (857)
T PRK10865 599 GSFLFLGPTGVGKTELCKALAN--FMFDSDDAMVRIDMS--E-FMEKHSVSRL---VGAP--PGYVGYEE---GGYLTEA 665 (857)
T ss_pred ceEEEECCCCCCHHHHHHHHHH--HhhcCCCcEEEEEhH--H-hhhhhhHHHH---hCCC--Ccccccch---hHHHHHH
Confidence 5788999999999999999998 332222333444444 2 1111111111 1211 00011111 1123333
Q ss_pred cCCCc-EEEEEeCcCccCchhhhhhc
Q 001843 354 LDDST-FLIVMENAEHQKSQVWDSFL 378 (1007)
Q Consensus 354 L~~kr-~LlVlDdv~~~~~~~~~~l~ 378 (1007)
++.++ -+|+||++...+++.++.+.
T Consensus 666 v~~~p~~vLllDEieka~~~v~~~Ll 691 (857)
T PRK10865 666 VRRRPYSVILLDEVEKAHPDVFNILL 691 (857)
T ss_pred HHhCCCCeEEEeehhhCCHHHHHHHH
Confidence 33333 59999999877788887776
No 197
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=96.61 E-value=0.032 Score=62.30 Aligned_cols=95 Identities=7% Similarity=0.055 Sum_probs=67.5
Q ss_pred CCcEEEEEeCcCccCchhhhhhc-cccCCCCCCcEEEEEcCCCcccccccCCcceeeecCCCCHHHHHHHHHhhhccccc
Q 001843 356 DSTFLIVMENAEHQKSQVWDSFL-GKLCSFTQCGKIIITTSSTEDFVEPLGAAFSTLHVPGLGKNESWELFLKKARIAED 434 (1007)
Q Consensus 356 ~kr~LlVlDdv~~~~~~~~~~l~-~l~~~~~~gs~IliTTR~~~~va~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~ 434 (1007)
+++=++|+|+++.-+....+.+. .+-+- ..++.+|++|.+...+.....+.+..+.+.+++.+++.+.+......
T Consensus 107 g~~kV~iI~~ae~m~~~AaNaLLKtLEEP-p~~t~fiL~t~~~~~lLpTIrSRCq~~~~~~~~~~~~~~~L~~~~~~--- 182 (334)
T PRK07993 107 GGAKVVWLPDAALLTDAAANALLKTLEEP-PENTWFFLACREPARLLATLRSRCRLHYLAPPPEQYALTWLSREVTM--- 182 (334)
T ss_pred CCceEEEEcchHhhCHHHHHHHHHHhcCC-CCCeEEEEEECChhhChHHHHhccccccCCCCCHHHHHHHHHHccCC---
Confidence 56669999999876777777777 44333 55677777777665477666666688999999999998877654211
Q ss_pred cccCCChHHHHHHHHHHHHcCCCchHHH
Q 001843 435 VLQSRSSELIKLKKQILNICDGLPLRVV 462 (1007)
Q Consensus 435 ~~~~~~~~~~~~~~~I~~~c~GlPLai~ 462 (1007)
+ .+.+..++..++|.|....
T Consensus 183 -----~---~~~a~~~~~la~G~~~~Al 202 (334)
T PRK07993 183 -----S---QDALLAALRLSAGAPGAAL 202 (334)
T ss_pred -----C---HHHHHHHHHHcCCCHHHHH
Confidence 1 2336788999999996443
No 198
>PRK06921 hypothetical protein; Provisional
Probab=96.60 E-value=0.0073 Score=65.27 Aligned_cols=36 Identities=33% Similarity=0.406 Sum_probs=28.0
Q ss_pred EEEEEEcCCCChHHHHHHHHHhhhhcccC-CCceEEEEe
Q 001843 274 QVIALIGKAGSGKTTLARIVYNRVYVKRH-FTKRAWVHI 311 (1007)
Q Consensus 274 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-F~~~~wv~~ 311 (1007)
.-+.++|..|+|||+||.++++ .+... -..+++++.
T Consensus 118 ~~l~l~G~~G~GKThLa~aia~--~l~~~~g~~v~y~~~ 154 (266)
T PRK06921 118 NSIALLGQPGSGKTHLLTAAAN--ELMRKKGVPVLYFPF 154 (266)
T ss_pred CeEEEECCCCCcHHHHHHHHHH--HHhhhcCceEEEEEH
Confidence 6789999999999999999999 44443 344566654
No 199
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=96.60 E-value=0.006 Score=62.49 Aligned_cols=122 Identities=20% Similarity=0.238 Sum_probs=57.6
Q ss_pred EEEEEEcCCCChHHHHHHHHHhhhhcccCCCceEEEEecC--CCC--C---CHHHHHHHHHHHHhhhhhhhccccCHHHH
Q 001843 274 QVIALIGKAGSGKTTLARIVYNRVYVKRHFTKRAWVHIPI--MSM--V---EDRDVLADILKQIDESLLKVEATLSAEEL 346 (1007)
Q Consensus 274 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~--~~~--~---~~~~~l~~il~~l~~~~~~~~~~~~~~~l 346 (1007)
.++.+.|++|.|||.||.+.+-+.-..+.|+.++++.-.. .+. | +..+-+.-.+.-+...+...-.....+.+
T Consensus 20 ~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~v~~~~~lGflpG~~~eK~~p~~~p~~d~l~~~~~~~~~~~~ 99 (205)
T PF02562_consen 20 DLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPPVEAGEDLGFLPGDLEEKMEPYLRPIYDALEELFGKEKLEEL 99 (205)
T ss_dssp SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S--TT----SS---------TTTHHHHHHHTTTS-TTCHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecCCCCccccccCCCCHHHHHHHHHHHHHHHHHHHhChHhHHHH
Confidence 6899999999999999999988755568888888875210 010 1 11111111111111110000011122222
Q ss_pred HHH------HHHHcCCC---cEEEEEeCcCccCchhhhhhccccCCCCCCcEEEEEcCCCc
Q 001843 347 MWR------ITQALDDS---TFLIVMENAEHQKSQVWDSFLGKLCSFTQCGKIIITTSSTE 398 (1007)
Q Consensus 347 ~~~------l~~~L~~k---r~LlVlDdv~~~~~~~~~~l~~l~~~~~~gs~IliTTR~~~ 398 (1007)
.+. --.+++++ ..+||+|++.+.+..++..+. ... +.|||||++--..+
T Consensus 100 ~~~~~Ie~~~~~~iRGrt~~~~~iIvDEaQN~t~~~~k~il--TR~-g~~skii~~GD~~Q 157 (205)
T PF02562_consen 100 IQNGKIEIEPLAFIRGRTFDNAFIIVDEAQNLTPEELKMIL--TRI-GEGSKIIITGDPSQ 157 (205)
T ss_dssp HHTTSEEEEEGGGGTT--B-SEEEEE-SGGG--HHHHHHHH--TTB--TT-EEEEEE----
T ss_pred hhcCeEEEEehhhhcCccccceEEEEecccCCCHHHHHHHH--ccc-CCCcEEEEecCcee
Confidence 210 01234554 459999999877777777775 222 77899999765443
No 200
>PRK06526 transposase; Provisional
Probab=96.60 E-value=0.003 Score=67.69 Aligned_cols=23 Identities=35% Similarity=0.481 Sum_probs=21.0
Q ss_pred EEEEEEcCCCChHHHHHHHHHhh
Q 001843 274 QVIALIGKAGSGKTTLARIVYNR 296 (1007)
Q Consensus 274 ~vi~I~G~gGiGKTtLa~~v~~~ 296 (1007)
.-+.|+|.+|+|||+||..+.+.
T Consensus 99 ~nlll~Gp~GtGKThLa~al~~~ 121 (254)
T PRK06526 99 ENVVFLGPPGTGKTHLAIGLGIR 121 (254)
T ss_pred ceEEEEeCCCCchHHHHHHHHHH
Confidence 56899999999999999999884
No 201
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=96.56 E-value=0.0053 Score=77.09 Aligned_cols=92 Identities=14% Similarity=0.192 Sum_probs=48.9
Q ss_pred EEEEEEcCCCChHHHHHHHHHhhhhcccCCCceEEEEecCCCCCCHHHHHHHHHHHHhhhhhhhccccCHHHHHHHHHHH
Q 001843 274 QVIALIGKAGSGKTTLARIVYNRVYVKRHFTKRAWVHIPIMSMVEDRDVLADILKQIDESLLKVEATLSAEELMWRITQA 353 (1007)
Q Consensus 274 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~l~~il~~l~~~~~~~~~~~~~~~l~~~l~~~ 353 (1007)
.++.++|+.|+|||.+|+.++. .+-+.....+-++++ .+....-.. .-++.+ +.....+. ...+.+.
T Consensus 597 ~~~lf~Gp~GvGKT~lA~~La~--~l~~~~~~~~~~dms---e~~~~~~~~---~l~g~~--~gyvg~~~---~g~L~~~ 663 (852)
T TIGR03345 597 GVFLLVGPSGVGKTETALALAE--LLYGGEQNLITINMS---EFQEAHTVS---RLKGSP--PGYVGYGE---GGVLTEA 663 (852)
T ss_pred eEEEEECCCCCCHHHHHHHHHH--HHhCCCcceEEEeHH---Hhhhhhhhc---cccCCC--CCcccccc---cchHHHH
Confidence 6899999999999999999988 332222222333333 111111111 111111 00011111 1122333
Q ss_pred cC-CCcEEEEEeCcCccCchhhhhhc
Q 001843 354 LD-DSTFLIVMENAEHQKSQVWDSFL 378 (1007)
Q Consensus 354 L~-~kr~LlVlDdv~~~~~~~~~~l~ 378 (1007)
++ ....+|+||++...+++.++.+.
T Consensus 664 v~~~p~svvllDEieka~~~v~~~Ll 689 (852)
T TIGR03345 664 VRRKPYSVVLLDEVEKAHPDVLELFY 689 (852)
T ss_pred HHhCCCcEEEEechhhcCHHHHHHHH
Confidence 33 34459999999987888877776
No 202
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.52 E-value=0.065 Score=58.27 Aligned_cols=182 Identities=17% Similarity=0.311 Sum_probs=97.3
Q ss_pred CCCCcEEEEEEcCCCChHHHHHHHHHhhhhcccCCCceEEEEecCCCCCCHHHHHHHHHHHHhhhhhhhccccCHHHHHH
Q 001843 269 TTTTTQVIALIGKAGSGKTTLARIVYNRVYVKRHFTKRAWVHIPIMSMVEDRDVLADILKQIDESLLKVEATLSAEELMW 348 (1007)
Q Consensus 269 ~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~l~~il~~l~~~~~~~~~~~~~~~l~~ 348 (1007)
+-..++=|.++|++|.|||-||++|+| +....| +.+. . .++.+..-+ +...+++
T Consensus 181 GI~PPKGVLLYGPPGTGKTLLAkAVA~--~T~AtF-----Irvv--g--------SElVqKYiG---------EGaRlVR 234 (406)
T COG1222 181 GIDPPKGVLLYGPPGTGKTLLAKAVAN--QTDATF-----IRVV--G--------SELVQKYIG---------EGARLVR 234 (406)
T ss_pred CCCCCCceEeeCCCCCcHHHHHHHHHh--ccCceE-----EEec--c--------HHHHHHHhc---------cchHHHH
Confidence 334557889999999999999999999 444433 4433 0 122222211 1223333
Q ss_pred HHHHHcC-CCcEEEEEeCcCcc-----------Cchhh---hhhccccCCC--CCCcEEEEEcCCCccccccc--C--Cc
Q 001843 349 RITQALD-DSTFLIVMENAEHQ-----------KSQVW---DSFLGKLCSF--TQCGKIIITTSSTEDFVEPL--G--AA 407 (1007)
Q Consensus 349 ~l~~~L~-~kr~LlVlDdv~~~-----------~~~~~---~~l~~l~~~~--~~gs~IliTTR~~~~va~~~--~--~~ 407 (1007)
.+-+.-+ ..++.|++|.++.. +.+.- -++..-.++| ...-|||..|-..+ +..-. . --
T Consensus 235 elF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~nvKVI~ATNR~D-~LDPALLRPGR~ 313 (406)
T COG1222 235 ELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGNVKVIMATNRPD-ILDPALLRPGRF 313 (406)
T ss_pred HHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCCCeEEEEecCCcc-ccChhhcCCCcc
Confidence 3333333 56899999998621 11111 1121111222 23568888776665 44321 1 11
Q ss_pred ceeeecCCCCHHHHHHHHHhhhccccccccCCChHHHHHHHHHHHHcCCCc----hHHHHHHHHhcCCCC----ChHHHH
Q 001843 408 FSTLHVPGLGKNESWELFLKKARIAEDVLQSRSSELIKLKKQILNICDGLP----LRVVLLAGLLSTKQP----SYEEWS 479 (1007)
Q Consensus 408 ~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~~~~I~~~c~GlP----Lai~~~g~~L~~~~~----~~~~w~ 479 (1007)
...++++.-+.+.=.++|+-|+..-.- ...-++ +.|++.|.|.- -||.+=|++++-+.. +.+.+.
T Consensus 314 DRkIEfplPd~~gR~~Il~IHtrkM~l---~~dvd~----e~la~~~~g~sGAdlkaictEAGm~AiR~~R~~Vt~~DF~ 386 (406)
T COG1222 314 DRKIEFPLPDEEGRAEILKIHTRKMNL---ADDVDL----ELLARLTEGFSGADLKAICTEAGMFAIRERRDEVTMEDFL 386 (406)
T ss_pred cceeecCCCCHHHHHHHHHHHhhhccC---ccCcCH----HHHHHhcCCCchHHHHHHHHHHhHHHHHhccCeecHHHHH
Confidence 167888866666667788777654332 112223 45666666665 345566666653322 344555
Q ss_pred HHHHH
Q 001843 480 KVIER 484 (1007)
Q Consensus 480 ~~l~~ 484 (1007)
+..++
T Consensus 387 ~Av~K 391 (406)
T COG1222 387 KAVEK 391 (406)
T ss_pred HHHHH
Confidence 44443
No 203
>PRK09183 transposase/IS protein; Provisional
Probab=96.51 E-value=0.0043 Score=66.84 Aligned_cols=23 Identities=39% Similarity=0.509 Sum_probs=20.7
Q ss_pred EEEEEEcCCCChHHHHHHHHHhh
Q 001843 274 QVIALIGKAGSGKTTLARIVYNR 296 (1007)
Q Consensus 274 ~vi~I~G~gGiGKTtLa~~v~~~ 296 (1007)
..+.|+|.+|+|||+||..+++.
T Consensus 103 ~~v~l~Gp~GtGKThLa~al~~~ 125 (259)
T PRK09183 103 ENIVLLGPSGVGKTHLAIALGYE 125 (259)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHH
Confidence 56779999999999999999874
No 204
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=96.51 E-value=0.065 Score=59.17 Aligned_cols=94 Identities=12% Similarity=0.159 Sum_probs=68.1
Q ss_pred CCcEEEEEeCcCccCchhhhhhc-cccCCCCCCcEEEEEcCCCcccccccCCcceeeecCCCCHHHHHHHHHhhhccccc
Q 001843 356 DSTFLIVMENAEHQKSQVWDSFL-GKLCSFTQCGKIIITTSSTEDFVEPLGAAFSTLHVPGLGKNESWELFLKKARIAED 434 (1007)
Q Consensus 356 ~kr~LlVlDdv~~~~~~~~~~l~-~l~~~~~~gs~IliTTR~~~~va~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~ 434 (1007)
+++=++|+|+++.-+....+.+. .+-.- ..++.+|++|.+...+.....+.+..+.+.+++.+++.+.+.....
T Consensus 107 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEP-p~~t~fiL~t~~~~~lLpTI~SRCq~~~~~~~~~~~~~~~L~~~~~---- 181 (319)
T PRK06090 107 NGYRLFVIEPADAMNESASNALLKTLEEP-APNCLFLLVTHNQKRLLPTIVSRCQQWVVTPPSTAQAMQWLKGQGI---- 181 (319)
T ss_pred CCceEEEecchhhhCHHHHHHHHHHhcCC-CCCeEEEEEECChhhChHHHHhcceeEeCCCCCHHHHHHHHHHcCC----
Confidence 44558899999877777888777 44333 5566777776665547777777779999999999999988865311
Q ss_pred cccCCChHHHHHHHHHHHHcCCCchHHHHH
Q 001843 435 VLQSRSSELIKLKKQILNICDGLPLRVVLL 464 (1007)
Q Consensus 435 ~~~~~~~~~~~~~~~I~~~c~GlPLai~~~ 464 (1007)
. .+..+++.++|.|+....+
T Consensus 182 -----~-----~~~~~l~l~~G~p~~A~~~ 201 (319)
T PRK06090 182 -----T-----VPAYALKLNMGSPLKTLAM 201 (319)
T ss_pred -----c-----hHHHHHHHcCCCHHHHHHH
Confidence 1 1346788999999976544
No 205
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=96.49 E-value=0.045 Score=64.64 Aligned_cols=140 Identities=14% Similarity=0.293 Sum_probs=72.0
Q ss_pred EEEEEEcCCCChHHHHHHHHHhhhhcccCCCceEEEEecCCCCCCHHHHHHHHHHHHhhhhhhhccccCHHHHHHHHHHH
Q 001843 274 QVIALIGKAGSGKTTLARIVYNRVYVKRHFTKRAWVHIPIMSMVEDRDVLADILKQIDESLLKVEATLSAEELMWRITQA 353 (1007)
Q Consensus 274 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~l~~il~~l~~~~~~~~~~~~~~~l~~~l~~~ 353 (1007)
.++++||++|+|||.|++.++. ...+.|-. +.++ .--|-. ++.++ ...-...-+..+++.+++.
T Consensus 351 pILcLVGPPGVGKTSLgkSIA~--al~RkfvR---~sLG--GvrDEA--------EIRGH-RRTYIGamPGrIiQ~mkka 414 (782)
T COG0466 351 PILCLVGPPGVGKTSLGKSIAK--ALGRKFVR---ISLG--GVRDEA--------EIRGH-RRTYIGAMPGKIIQGMKKA 414 (782)
T ss_pred cEEEEECCCCCCchhHHHHHHH--HhCCCEEE---EecC--ccccHH--------Hhccc-cccccccCChHHHHHHHHh
Confidence 7999999999999999999999 67776622 2333 111111 11111 0000111112222222222
Q ss_pred cCCCcEEEEEeCcCcc----------------Cchhhhhhc--cccCCCCCCcEEEEEcCCCcc-cccccCCcceeeecC
Q 001843 354 LDDSTFLIVMENAEHQ----------------KSQVWDSFL--GKLCSFTQCGKIIITTSSTED-FVEPLGAAFSTLHVP 414 (1007)
Q Consensus 354 L~~kr~LlVlDdv~~~----------------~~~~~~~l~--~l~~~~~~gs~IliTTR~~~~-va~~~~~~~~~~~l~ 414 (1007)
+.+.=+++||.++.. |+++=..|. ++--.+.-.-.+.|||-+.-. +....-....++++.
T Consensus 415 -~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS~VmFiaTANsl~tIP~PLlDRMEiI~ls 493 (782)
T COG0466 415 -GVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLSKVMFIATANSLDTIPAPLLDRMEVIRLS 493 (782)
T ss_pred -CCcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccchhheEEEeecCccccCChHHhcceeeeeec
Confidence 345568899988631 122222222 111111222234456655421 111111122899999
Q ss_pred CCCHHHHHHHHHhhhc
Q 001843 415 GLGKNESWELFLKKAR 430 (1007)
Q Consensus 415 ~L~~~ea~~Lf~~~a~ 430 (1007)
+-+++|=.++-+++..
T Consensus 494 gYt~~EKl~IAk~~Li 509 (782)
T COG0466 494 GYTEDEKLEIAKRHLI 509 (782)
T ss_pred CCChHHHHHHHHHhcc
Confidence 9999998888777654
No 206
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=96.49 E-value=0.044 Score=61.09 Aligned_cols=94 Identities=10% Similarity=0.126 Sum_probs=65.8
Q ss_pred CCcEEEEEeCcCccCchhhhhhc-cccCCCCCCcEEEEEcCCCcccccccCCcceeeecCCCCHHHHHHHHHhhhccccc
Q 001843 356 DSTFLIVMENAEHQKSQVWDSFL-GKLCSFTQCGKIIITTSSTEDFVEPLGAAFSTLHVPGLGKNESWELFLKKARIAED 434 (1007)
Q Consensus 356 ~kr~LlVlDdv~~~~~~~~~~l~-~l~~~~~~gs~IliTTR~~~~va~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~ 434 (1007)
+++=++|+|+++.-+...++.+. .+-.- ..++.+|++|.+...+.....+.+..+.+.+++.++..+.+.....
T Consensus 131 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEP-p~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~~~~---- 205 (342)
T PRK06964 131 GGARVVVLYPAEALNVAAANALLKTLEEP-PPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPEAAAAWLAAQGV---- 205 (342)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHhcCC-CcCcEEEEEECChhhCcHHHHhcCEEEEecCCCHHHHHHHHHHcCC----
Confidence 44558899999987888888888 44333 5566666666665547766666668999999999999988876521
Q ss_pred cccCCChHHHHHHHHHHHHcCCCchHHHHH
Q 001843 435 VLQSRSSELIKLKKQILNICDGLPLRVVLL 464 (1007)
Q Consensus 435 ~~~~~~~~~~~~~~~I~~~c~GlPLai~~~ 464 (1007)
++ ...++..++|.|+....+
T Consensus 206 -----~~-----~~~~l~~~~Gsp~~Al~~ 225 (342)
T PRK06964 206 -----AD-----ADALLAEAGGAPLAALAL 225 (342)
T ss_pred -----Ch-----HHHHHHHcCCCHHHHHHH
Confidence 11 123577889999755443
No 207
>PRK04132 replication factor C small subunit; Provisional
Probab=96.48 E-value=0.031 Score=69.06 Aligned_cols=152 Identities=13% Similarity=0.134 Sum_probs=96.0
Q ss_pred CCCChHHHHHHHHHhhhhcccCCC-ceEEEEecCCCCCCHHHHHHHHHHHHhhhhhhhccccCHHHHHHHHHHHcC-CCc
Q 001843 281 KAGSGKTTLARIVYNRVYVKRHFT-KRAWVHIPIMSMVEDRDVLADILKQIDESLLKVEATLSAEELMWRITQALD-DST 358 (1007)
Q Consensus 281 ~gGiGKTtLa~~v~~~~~~~~~F~-~~~wv~~s~~~~~~~~~~l~~il~~l~~~~~~~~~~~~~~~l~~~l~~~L~-~kr 358 (1007)
+.++||||+|..++++- ..+.++ .++-++++ .... .+.+++++..+... . -+. .+.
T Consensus 574 Ph~lGKTT~A~ala~~l-~g~~~~~~~lElNAS--d~rg-id~IR~iIk~~a~~--~----------------~~~~~~~ 631 (846)
T PRK04132 574 PTVLHNTTAALALAREL-FGENWRHNFLELNAS--DERG-INVIREKVKEFART--K----------------PIGGASF 631 (846)
T ss_pred CCcccHHHHHHHHHHhh-hcccccCeEEEEeCC--Cccc-HHHHHHHHHHHHhc--C----------------CcCCCCC
Confidence 67899999999999941 122232 25556665 3322 33444554443321 0 011 245
Q ss_pred EEEEEeCcCccCchhhhhhccccCCCCCCcEEEEEcCCCcccccccCCcceeeecCCCCHHHHHHHHHhhhccccccccC
Q 001843 359 FLIVMENAEHQKSQVWDSFLGKLCSFTQCGKIIITTSSTEDFVEPLGAAFSTLHVPGLGKNESWELFLKKARIAEDVLQS 438 (1007)
Q Consensus 359 ~LlVlDdv~~~~~~~~~~l~~l~~~~~~gs~IliTTR~~~~va~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~ 438 (1007)
-++|+|+++.-+.+..+.++.+.......+++|++|.+...+.....+.+..+++++++.++-.+.+...+..... .
T Consensus 632 KVvIIDEaD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~Egi---~ 708 (846)
T PRK04132 632 KIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGL---E 708 (846)
T ss_pred EEEEEECcccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHhcCC---C
Confidence 7999999997777777777733332144567776666655476666666699999999999988887766543221 1
Q ss_pred CChHHHHHHHHHHHHcCCCchH
Q 001843 439 RSSELIKLKKQILNICDGLPLR 460 (1007)
Q Consensus 439 ~~~~~~~~~~~I~~~c~GlPLa 460 (1007)
.+ .+....|++.++|-+-.
T Consensus 709 i~---~e~L~~Ia~~s~GDlR~ 727 (846)
T PRK04132 709 LT---EEGLQAILYIAEGDMRR 727 (846)
T ss_pred CC---HHHHHHHHHHcCCCHHH
Confidence 11 45778999999998743
No 208
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.46 E-value=0.013 Score=70.45 Aligned_cols=23 Identities=26% Similarity=0.605 Sum_probs=21.5
Q ss_pred EEEEEEcCCCChHHHHHHHHHhh
Q 001843 274 QVIALIGKAGSGKTTLARIVYNR 296 (1007)
Q Consensus 274 ~vi~I~G~gGiGKTtLa~~v~~~ 296 (1007)
+++.|+|++|.||||+++.++..
T Consensus 111 ~illL~GP~GsGKTTl~~~la~~ 133 (637)
T TIGR00602 111 RILLITGPSGCGKSTTIKILSKE 133 (637)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 78999999999999999999983
No 209
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=96.43 E-value=0.024 Score=63.63 Aligned_cols=124 Identities=12% Similarity=0.196 Sum_probs=76.2
Q ss_pred EEEEEEcCCCChHHHHHHHHHhhhhccc---------------------CCCceEEEEecCCCCCC---HHHHHHHHHHH
Q 001843 274 QVIALIGKAGSGKTTLARIVYNRVYVKR---------------------HFTKRAWVHIPIMSMVE---DRDVLADILKQ 329 (1007)
Q Consensus 274 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~---------------------~F~~~~wv~~s~~~~~~---~~~~l~~il~~ 329 (1007)
..+-++|++|+||||+|..+++. +.. ..+.+..+..+ .... ..+..+++...
T Consensus 25 halL~~Gp~G~Gktt~a~~lA~~--l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~s--~~~~~~i~~~~vr~~~~~ 100 (325)
T COG0470 25 HALLFYGPPGVGKTTAALALAKE--LLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNPS--DLRKIDIIVEQVRELAEF 100 (325)
T ss_pred ceeeeeCCCCCCHHHHHHHHHHH--HhCCCcccCCcccchhhhhHHhhcCCCceEEeccc--ccCCCcchHHHHHHHHHH
Confidence 35889999999999999999984 321 12345555544 2222 22333333332
Q ss_pred HhhhhhhhccccCHHHHHHHHHHHcCCCcEEEEEeCcCccCchhhhhhc-cccCCCCCCcEEEEEcCCCcccccccCCcc
Q 001843 330 IDESLLKVEATLSAEELMWRITQALDDSTFLIVMENAEHQKSQVWDSFL-GKLCSFTQCGKIIITTSSTEDFVEPLGAAF 408 (1007)
Q Consensus 330 l~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~~~~~~~~l~-~l~~~~~~gs~IliTTR~~~~va~~~~~~~ 408 (1007)
.... ...++.-++|+|+++..+.+.-+.+. .+-.. ...+.+|++|.....+.....+.+
T Consensus 101 ~~~~-------------------~~~~~~kviiidead~mt~~A~nallk~lEep-~~~~~~il~~n~~~~il~tI~SRc 160 (325)
T COG0470 101 LSES-------------------PLEGGYKVVIIDEADKLTEDAANALLKTLEEP-PKNTRFILITNDPSKILPTIRSRC 160 (325)
T ss_pred hccC-------------------CCCCCceEEEeCcHHHHhHHHHHHHHHHhccC-CCCeEEEEEcCChhhccchhhhcc
Confidence 2221 00356779999999866666666666 33333 567788888886655666666666
Q ss_pred eeeecCCCCHHHH
Q 001843 409 STLHVPGLGKNES 421 (1007)
Q Consensus 409 ~~~~l~~L~~~ea 421 (1007)
..+++.+.+..+.
T Consensus 161 ~~i~f~~~~~~~~ 173 (325)
T COG0470 161 QRIRFKPPSRLEA 173 (325)
T ss_pred eeeecCCchHHHH
Confidence 7888887444433
No 210
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=96.40 E-value=0.039 Score=59.72 Aligned_cols=43 Identities=30% Similarity=0.318 Sum_probs=29.1
Q ss_pred EEEEEEcCCCChHHHHHHHHHhhhhcccCCCceEEEEecCCCCCCHHHHH
Q 001843 274 QVIALIGKAGSGKTTLARIVYNRVYVKRHFTKRAWVHIPIMSMVEDRDVL 323 (1007)
Q Consensus 274 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~l 323 (1007)
+-|.+.|.+|+|||++|+.+++ .... ..+++++. ...+..+++
T Consensus 22 ~~vLL~G~~GtGKT~lA~~la~--~lg~---~~~~i~~~--~~~~~~dll 64 (262)
T TIGR02640 22 YPVHLRGPAGTGKTTLAMHVAR--KRDR---PVMLINGD--AELTTSDLV 64 (262)
T ss_pred CeEEEEcCCCCCHHHHHHHHHH--HhCC---CEEEEeCC--ccCCHHHHh
Confidence 4556899999999999999997 3332 23455555 555444443
No 211
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=96.40 E-value=0.032 Score=58.70 Aligned_cols=66 Identities=20% Similarity=0.085 Sum_probs=46.7
Q ss_pred EEEEcCCCcccccccCCcc-eeeecCCCCHHHHHHHHHhhhccccccccCCChHHHHHHHHHHHHcCCCchHHH
Q 001843 390 IIITTSSTEDFVEPLGAAF-STLHVPGLGKNESWELFLKKARIAEDVLQSRSSELIKLKKQILNICDGLPLRVV 462 (1007)
Q Consensus 390 IliTTR~~~~va~~~~~~~-~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~ 462 (1007)
|=-|||--. +.+-..... .+.+++..+++|-.+...+.+..-.. +-.++.+.+|+++..|-|--..
T Consensus 155 IGATTr~G~-lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l~i------~i~~~~a~eIA~rSRGTPRIAn 221 (332)
T COG2255 155 IGATTRAGM-LTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKILGI------EIDEEAALEIARRSRGTPRIAN 221 (332)
T ss_pred eeecccccc-ccchhHHhcCCeeeeecCCHHHHHHHHHHHHHHhCC------CCChHHHHHHHHhccCCcHHHH
Confidence 335898766 555444332 67889999999999999888754322 2335778999999999996433
No 212
>PRK12608 transcription termination factor Rho; Provisional
Probab=96.40 E-value=0.016 Score=64.55 Aligned_cols=91 Identities=15% Similarity=0.159 Sum_probs=56.1
Q ss_pred EEEEEEcCCCChHHHHHHHHHhhhhcccCC-Cc-eEEEEecCCCCCCHHHHHHHHHHHHhhhhhhhc--cccCHHHHHHH
Q 001843 274 QVIALIGKAGSGKTTLARIVYNRVYVKRHF-TK-RAWVHIPIMSMVEDRDVLADILKQIDESLLKVE--ATLSAEELMWR 349 (1007)
Q Consensus 274 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F-~~-~~wv~~s~~~~~~~~~~l~~il~~l~~~~~~~~--~~~~~~~l~~~ 349 (1007)
+-+.|+|..|+|||||++.+++ .+.... +. ++|+.+. .+..+..++++.+...+........ .....-.....
T Consensus 134 QR~LIvG~pGtGKTTLl~~la~--~i~~~~~dv~~vv~lIg-ER~~EV~df~~~i~~~Vvast~de~~~~~~~v~~~~~~ 210 (380)
T PRK12608 134 QRGLIVAPPRAGKTVLLQQIAA--AVAANHPEVHLMVLLID-ERPEEVTDMRRSVKGEVYASTFDRPPDEHIRVAELVLE 210 (380)
T ss_pred ceEEEECCCCCCHHHHHHHHHH--HHHhcCCCceEEEEEec-CCCCCHHHHHHHHhhhEEeecCCCCHHHHHHHHHHHHH
Confidence 5669999999999999999998 443332 33 4677766 1445778888888776655310011 00011111112
Q ss_pred HHHHc--CCCcEEEEEeCcC
Q 001843 350 ITQAL--DDSTFLIVMENAE 367 (1007)
Q Consensus 350 l~~~L--~~kr~LlVlDdv~ 367 (1007)
+.+++ ++++.+||+|++.
T Consensus 211 ~Ae~f~~~GkdVVLvlDslt 230 (380)
T PRK12608 211 RAKRLVEQGKDVVILLDSLT 230 (380)
T ss_pred HHHHHHHcCCCEEEEEeCcH
Confidence 22222 5899999999985
No 213
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=96.35 E-value=0.013 Score=74.30 Aligned_cols=92 Identities=16% Similarity=0.304 Sum_probs=50.8
Q ss_pred EEEEEEcCCCChHHHHHHHHHhhhhcccCCCceEEEEecCCCCCCHHHHHHHHHHHHhhhhhhhccccCHHHHHHHHHHH
Q 001843 274 QVIALIGKAGSGKTTLARIVYNRVYVKRHFTKRAWVHIPIMSMVEDRDVLADILKQIDESLLKVEATLSAEELMWRITQA 353 (1007)
Q Consensus 274 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~l~~il~~l~~~~~~~~~~~~~~~l~~~l~~~ 353 (1007)
.++.++|+.|+|||++|+.++. .....-...+.++++ .-.. ......+ ++.+ +.....+. ...+.+.
T Consensus 596 ~~~Lf~Gp~GvGKt~lA~~La~--~l~~~~~~~i~~d~s--~~~~-~~~~~~l---~g~~--~g~~g~~~---~g~l~~~ 662 (852)
T TIGR03346 596 GSFLFLGPTGVGKTELAKALAE--FLFDDEDAMVRIDMS--EYME-KHSVARL---IGAP--PGYVGYEE---GGQLTEA 662 (852)
T ss_pred eEEEEEcCCCCCHHHHHHHHHH--HhcCCCCcEEEEech--hhcc-cchHHHh---cCCC--CCccCccc---ccHHHHH
Confidence 6788999999999999999998 333322334445554 2111 1111111 1211 00001100 1123333
Q ss_pred cCCCc-EEEEEeCcCccCchhhhhhc
Q 001843 354 LDDST-FLIVMENAEHQKSQVWDSFL 378 (1007)
Q Consensus 354 L~~kr-~LlVlDdv~~~~~~~~~~l~ 378 (1007)
++.++ .+|+||++...+++.++.+.
T Consensus 663 v~~~p~~vlllDeieka~~~v~~~Ll 688 (852)
T TIGR03346 663 VRRKPYSVVLFDEVEKAHPDVFNVLL 688 (852)
T ss_pred HHcCCCcEEEEeccccCCHHHHHHHH
Confidence 33333 49999999988888888777
No 214
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=96.35 E-value=0.013 Score=73.03 Aligned_cols=89 Identities=15% Similarity=0.246 Sum_probs=51.4
Q ss_pred EEEEEEcCCCChHHHHHHHHHhhhhcccCCCceEEEEecCCCCCCHHHHHHHHHHHHhhhhhhhccccCHHHHHHHHHHH
Q 001843 274 QVIALIGKAGSGKTTLARIVYNRVYVKRHFTKRAWVHIPIMSMVEDRDVLADILKQIDESLLKVEATLSAEELMWRITQA 353 (1007)
Q Consensus 274 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~l~~il~~l~~~~~~~~~~~~~~~l~~~l~~~ 353 (1007)
.++.++|+.|+|||+||+.++. .. +...+.++++ .-.+. . .+...++.. ......+. ...+.+.
T Consensus 485 ~~~lf~Gp~GvGKT~lA~~la~--~l---~~~~~~~d~s--e~~~~-~---~~~~lig~~--~gyvg~~~---~~~l~~~ 548 (731)
T TIGR02639 485 GSFLFTGPTGVGKTELAKQLAE--AL---GVHLERFDMS--EYMEK-H---TVSRLIGAP--PGYVGFEQ---GGLLTEA 548 (731)
T ss_pred eeEEEECCCCccHHHHHHHHHH--Hh---cCCeEEEeCc--hhhhc-c---cHHHHhcCC--CCCcccch---hhHHHHH
Confidence 5789999999999999999998 34 2334566655 21111 0 111112221 00011111 1223344
Q ss_pred cCCCc-EEEEEeCcCccCchhhhhhc
Q 001843 354 LDDST-FLIVMENAEHQKSQVWDSFL 378 (1007)
Q Consensus 354 L~~kr-~LlVlDdv~~~~~~~~~~l~ 378 (1007)
++.++ -+|+||+++..+++.++.+.
T Consensus 549 ~~~~p~~VvllDEieka~~~~~~~Ll 574 (731)
T TIGR02639 549 VRKHPHCVLLLDEIEKAHPDIYNILL 574 (731)
T ss_pred HHhCCCeEEEEechhhcCHHHHHHHH
Confidence 44444 49999999988888777776
No 215
>PRK13531 regulatory ATPase RavA; Provisional
Probab=96.31 E-value=0.015 Score=66.95 Aligned_cols=22 Identities=27% Similarity=0.416 Sum_probs=19.9
Q ss_pred EEEEEEcCCCChHHHHHHHHHh
Q 001843 274 QVIALIGKAGSGKTTLARIVYN 295 (1007)
Q Consensus 274 ~vi~I~G~gGiGKTtLa~~v~~ 295 (1007)
.-|.|.|.+|+|||++|+.++.
T Consensus 40 ~hVLL~GpPGTGKT~LAraLa~ 61 (498)
T PRK13531 40 ESVFLLGPPGIAKSLIARRLKF 61 (498)
T ss_pred CCEEEECCCChhHHHHHHHHHH
Confidence 3467999999999999999998
No 216
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.31 E-value=0.019 Score=71.67 Aligned_cols=155 Identities=17% Similarity=0.170 Sum_probs=77.5
Q ss_pred EEEEEEcCCCChHHHHHHHHHhhhhcccCCCceEEEEecCCCCCCHHHHHHHHHHHHhhhhhhhccccCHHHHHHHHHHH
Q 001843 274 QVIALIGKAGSGKTTLARIVYNRVYVKRHFTKRAWVHIPIMSMVEDRDVLADILKQIDESLLKVEATLSAEELMWRITQA 353 (1007)
Q Consensus 274 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~l~~il~~l~~~~~~~~~~~~~~~l~~~l~~~ 353 (1007)
+-|.++|.+|+|||+||+.+++ .....| +.+..+ ++ ..... ......+...+...
T Consensus 213 ~giLL~GppGtGKT~laraia~--~~~~~~---i~i~~~--------~i----~~~~~--------g~~~~~l~~lf~~a 267 (733)
T TIGR01243 213 KGVLLYGPPGTGKTLLAKAVAN--EAGAYF---ISINGP--------EI----MSKYY--------GESEERLREIFKEA 267 (733)
T ss_pred ceEEEECCCCCChHHHHHHHHH--HhCCeE---EEEecH--------HH----hcccc--------cHHHHHHHHHHHHH
Confidence 6788999999999999999999 333322 222221 00 00000 01112222333333
Q ss_pred cCCCcEEEEEeCcCccC-----------chhhhhhccccCCC-CCCcEEEE-EcCCCcccccccCC---cceeeecCCCC
Q 001843 354 LDDSTFLIVMENAEHQK-----------SQVWDSFLGKLCSF-TQCGKIII-TTSSTEDFVEPLGA---AFSTLHVPGLG 417 (1007)
Q Consensus 354 L~~kr~LlVlDdv~~~~-----------~~~~~~l~~l~~~~-~~gs~Ili-TTR~~~~va~~~~~---~~~~~~l~~L~ 417 (1007)
....+.+|+||+++... ......+..+.+.. ..+..++| ||.....+...... ....+.+...+
T Consensus 268 ~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~vivI~atn~~~~ld~al~r~gRfd~~i~i~~P~ 347 (733)
T TIGR01243 268 EENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGRVIVIGATNRPDALDPALRRPGRFDREIVIRVPD 347 (733)
T ss_pred HhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCCCEEEEeecCChhhcCHHHhCchhccEEEEeCCcC
Confidence 44567899999986210 01122233222221 22334444 44433312221111 11567788888
Q ss_pred HHHHHHHHHhhhccccccccCCChHHHHHHHHHHHHcCCCchH
Q 001843 418 KNESWELFLKKARIAEDVLQSRSSELIKLKKQILNICDGLPLR 460 (1007)
Q Consensus 418 ~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~~~~I~~~c~GlPLa 460 (1007)
.++-.+++..+...... . .......+++.+.|.--+
T Consensus 348 ~~~R~~Il~~~~~~~~l-----~--~d~~l~~la~~t~G~~ga 383 (733)
T TIGR01243 348 KRARKEILKVHTRNMPL-----A--EDVDLDKLAEVTHGFVGA 383 (733)
T ss_pred HHHHHHHHHHHhcCCCC-----c--cccCHHHHHHhCCCCCHH
Confidence 88888888755432111 0 012245677777776543
No 217
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.31 E-value=0.049 Score=62.77 Aligned_cols=75 Identities=19% Similarity=0.305 Sum_probs=52.8
Q ss_pred CCCCCcEEEEEEcCCCChHHHHHHHHHhhhhcccCCCceEEEEecCCCCCCHHHHHHHHHHHHhhhhhhhccccCHHHHH
Q 001843 268 TTTTTTQVIALIGKAGSGKTTLARIVYNRVYVKRHFTKRAWVHIPIMSMVEDRDVLADILKQIDESLLKVEATLSAEELM 347 (1007)
Q Consensus 268 ~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~l~~il~~l~~~~~~~~~~~~~~~l~ 347 (1007)
.+..+++=|.++|++|.|||.||+++++ ...-.| +.++ .+ +|+..+ ...+.+.+.
T Consensus 218 lGv~PprGvLlHGPPGCGKT~lA~AiAg--el~vPf-----~~is--Ap--------eivSGv--------SGESEkkiR 272 (802)
T KOG0733|consen 218 LGVRPPRGVLLHGPPGCGKTSLANAIAG--ELGVPF-----LSIS--AP--------EIVSGV--------SGESEKKIR 272 (802)
T ss_pred cCCCCCCceeeeCCCCccHHHHHHHHhh--hcCCce-----Eeec--ch--------hhhccc--------CcccHHHHH
Confidence 4556668899999999999999999999 444333 4443 11 222222 233556666
Q ss_pred HHHHHHcCCCcEEEEEeCcC
Q 001843 348 WRITQALDDSTFLIVMENAE 367 (1007)
Q Consensus 348 ~~l~~~L~~kr~LlVlDdv~ 367 (1007)
+.+.+.-..-++++++|+++
T Consensus 273 elF~~A~~~aPcivFiDeID 292 (802)
T KOG0733|consen 273 ELFDQAKSNAPCIVFIDEID 292 (802)
T ss_pred HHHHHHhccCCeEEEeeccc
Confidence 66777777899999999997
No 218
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=96.26 E-value=0.011 Score=63.17 Aligned_cols=89 Identities=18% Similarity=0.209 Sum_probs=52.4
Q ss_pred EEEEEEcCCCChHHHHHHHHHhhhhcccCCCc-eEEEEecCCCCCCHHHHHHHHHHHHhhhhhhh-----ccccCH----
Q 001843 274 QVIALIGKAGSGKTTLARIVYNRVYVKRHFTK-RAWVHIPIMSMVEDRDVLADILKQIDESLLKV-----EATLSA---- 343 (1007)
Q Consensus 274 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~-~~wv~~s~~~~~~~~~~l~~il~~l~~~~~~~-----~~~~~~---- 343 (1007)
+-++|+|-.|.|||||++.+++ .++.+|+. ++++.++ .+.....++.+++...=..+ .. ..+...
T Consensus 70 Qr~~If~~~G~GKTtLa~~i~~--~i~~~~~~~~V~~~iG-er~~Ev~e~~~~~~~~~~~~--~tvvv~~t~d~~~~~r~ 144 (274)
T cd01133 70 GKIGLFGGAGVGKTVLIMELIN--NIAKAHGGYSVFAGVG-ERTREGNDLYHEMKESGVLS--KTALVYGQMNEPPGARA 144 (274)
T ss_pred CEEEEecCCCCChhHHHHHHHH--HHHhcCCCEEEEEEec-cCcHHHHHHHHHHHhcCCcc--eeEEEEECCCCCHHHHH
Confidence 7789999999999999999999 56656654 4555555 13334455555554321110 00 011111
Q ss_pred --HHHHHHHHHHc---CCCcEEEEEeCcC
Q 001843 344 --EELMWRITQAL---DDSTFLIVMENAE 367 (1007)
Q Consensus 344 --~~l~~~l~~~L---~~kr~LlVlDdv~ 367 (1007)
-...-.+.+++ +++.+|+++||+-
T Consensus 145 ~~~~~a~~~AEyfr~~~g~~Vl~~~Dslt 173 (274)
T cd01133 145 RVALTGLTMAEYFRDEEGQDVLLFIDNIF 173 (274)
T ss_pred HHHHHHHHHHHHHHHhcCCeEEEEEeChh
Confidence 11112233444 3899999999985
No 219
>PRK07261 topology modulation protein; Provisional
Probab=96.26 E-value=0.011 Score=59.49 Aligned_cols=35 Identities=37% Similarity=0.494 Sum_probs=24.9
Q ss_pred EEEEEcCCCChHHHHHHHHHhhhhcc-cCCCceEEE
Q 001843 275 VIALIGKAGSGKTTLARIVYNRVYVK-RHFTKRAWV 309 (1007)
Q Consensus 275 vi~I~G~gGiGKTtLa~~v~~~~~~~-~~F~~~~wv 309 (1007)
.|.|+|++|+||||||+++.....+. -+.|...|-
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~~ 37 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHFQ 37 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEec
Confidence 47899999999999999998742221 234555553
No 220
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.24 E-value=0.0052 Score=61.16 Aligned_cols=98 Identities=24% Similarity=0.117 Sum_probs=63.9
Q ss_pred EEEecCCCCCCCCCcCCCcceEEEEeccccCCCCchhhhhhhccccccCCCCcccEEEecCCCCCCcCC--CccccCCCc
Q 001843 618 LAANLGSNSFPYSSLLSWRLHSYLVFDSRIRGTPAKQIGIILGKCISKRRLGMLKVLDLEGVYKPMLTN--NNALGRLPF 695 (1007)
Q Consensus 618 Lsl~~~~~~~~~~~~~~~~LRsL~l~~~~~~~~~~~~i~~~l~~~~~~~~l~~Lr~L~Ls~~~l~~~~l--p~~i~~L~~ 695 (1007)
+.+..|........+.+++|.+|.+.+|.+.. +-+.+- ..+++|.+|.|.+|++. .+ ...+..++.
T Consensus 47 iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~--------I~p~L~--~~~p~l~~L~LtnNsi~--~l~dl~pLa~~p~ 114 (233)
T KOG1644|consen 47 IDLTDNDLRKLDNLPHLPRLHTLLLNNNRITR--------IDPDLD--TFLPNLKTLILTNNSIQ--ELGDLDPLASCPK 114 (233)
T ss_pred ecccccchhhcccCCCccccceEEecCCccee--------eccchh--hhccccceEEecCcchh--hhhhcchhccCCc
Confidence 34444444444444677788888888887743 223333 45577888888888766 33 234556778
Q ss_pred CcEEecccCCCcccCc----ccccCCCCCEEeecCC
Q 001843 696 LEYLGLRSTFIDSLPD----STPILFCLATLDVSHT 727 (1007)
Q Consensus 696 Lr~L~L~~n~i~~LP~----~i~~L~~L~~L~L~~~ 727 (1007)
|+||.+-+|.++.-+. -+.++++|++||..+-
T Consensus 115 L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 115 LEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred cceeeecCCchhcccCceeEEEEecCcceEeehhhh
Confidence 8888888887776654 3677888888887654
No 221
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.23 E-value=0.032 Score=69.82 Aligned_cols=152 Identities=17% Similarity=0.240 Sum_probs=79.8
Q ss_pred EEEEEEcCCCChHHHHHHHHHhhhhcccCCCceEEEEecCCCCCCHHHHHHHHHHHHhhhhhhhccccCHHHHHHHHHHH
Q 001843 274 QVIALIGKAGSGKTTLARIVYNRVYVKRHFTKRAWVHIPIMSMVEDRDVLADILKQIDESLLKVEATLSAEELMWRITQA 353 (1007)
Q Consensus 274 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~l~~il~~l~~~~~~~~~~~~~~~l~~~l~~~ 353 (1007)
+-|.++|++|.|||++|+++++ .....| +.+. . . +++... .......+...+...
T Consensus 488 ~giLL~GppGtGKT~lakalA~--e~~~~f-----i~v~--~----~----~l~~~~--------vGese~~i~~~f~~A 542 (733)
T TIGR01243 488 KGVLLFGPPGTGKTLLAKAVAT--ESGANF-----IAVR--G----P----EILSKW--------VGESEKAIREIFRKA 542 (733)
T ss_pred ceEEEECCCCCCHHHHHHHHHH--hcCCCE-----EEEe--h----H----HHhhcc--------cCcHHHHHHHHHHHH
Confidence 5688999999999999999999 343333 3332 1 0 111111 111222233333333
Q ss_pred cCCCcEEEEEeCcCcc--------Cc----hhhhhhc-cccCC-CCCCcEEEEEcCCCcccccc-c-C--CcceeeecCC
Q 001843 354 LDDSTFLIVMENAEHQ--------KS----QVWDSFL-GKLCS-FTQCGKIIITTSSTEDFVEP-L-G--AAFSTLHVPG 415 (1007)
Q Consensus 354 L~~kr~LlVlDdv~~~--------~~----~~~~~l~-~l~~~-~~~gs~IliTTR~~~~va~~-~-~--~~~~~~~l~~ 415 (1007)
-...+.+|++|+++.- +. ....++. .+..- ...+--||.||.... .... . . -....+.++.
T Consensus 543 ~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~v~vI~aTn~~~-~ld~allRpgRfd~~i~v~~ 621 (733)
T TIGR01243 543 RQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSNVVVIAATNRPD-ILDPALLRPGRFDRLILVPP 621 (733)
T ss_pred HhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCCEEEEEeCCChh-hCCHhhcCCCccceEEEeCC
Confidence 3467899999998621 00 1112232 22110 023344555776554 3321 1 1 1117888999
Q ss_pred CCHHHHHHHHHhhhccccccccCCChHHHHHHHHHHHHcCCCc
Q 001843 416 LGKNESWELFLKKARIAEDVLQSRSSELIKLKKQILNICDGLP 458 (1007)
Q Consensus 416 L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~~~~I~~~c~GlP 458 (1007)
.+.++-.++|+.+...... ....+ ...+++.+.|.-
T Consensus 622 Pd~~~R~~i~~~~~~~~~~---~~~~~----l~~la~~t~g~s 657 (733)
T TIGR01243 622 PDEEARKEIFKIHTRSMPL---AEDVD----LEELAEMTEGYT 657 (733)
T ss_pred cCHHHHHHHHHHHhcCCCC---CccCC----HHHHHHHcCCCC
Confidence 9999999999766543221 11111 345667776654
No 222
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=96.22 E-value=0.15 Score=60.11 Aligned_cols=182 Identities=10% Similarity=0.189 Sum_probs=107.5
Q ss_pred EEEEEEcCCCChHHHHHHHHHhhhh---cccCCCceEEEEecCCCCCCHHHHHHHHHHHHhhhhhhhccccCHHHHHHHH
Q 001843 274 QVIALIGKAGSGKTTLARIVYNRVY---VKRHFTKRAWVHIPIMSMVEDRDVLADILKQIDESLLKVEATLSAEELMWRI 350 (1007)
Q Consensus 274 ~vi~I~G~gGiGKTtLa~~v~~~~~---~~~~F~~~~wv~~s~~~~~~~~~~l~~il~~l~~~~~~~~~~~~~~~l~~~l 350 (1007)
+.+-|.|-+|.|||..+..|-+.-. -++.-+...+|.+..+.-....++...|+..+.+. ..........+
T Consensus 423 ~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l~~~~~~Y~~I~~~lsg~------~~~~~~al~~L 496 (767)
T KOG1514|consen 423 SCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRLASPREIYEKIWEALSGE------RVTWDAALEAL 496 (767)
T ss_pred eeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceeecCHHHHHHHHHHhcccC------cccHHHHHHHH
Confidence 6999999999999999999988432 12223333445555447778999999999999875 22333334444
Q ss_pred HHHcC-----CCcEEEEEeCcC---ccCchhhhhhccccCCCCCCcEEEEEcCC--Cc--------ccccccCCcceeee
Q 001843 351 TQALD-----DSTFLIVMENAE---HQKSQVWDSFLGKLCSFTQCGKIIITTSS--TE--------DFVEPLGAAFSTLH 412 (1007)
Q Consensus 351 ~~~L~-----~kr~LlVlDdv~---~~~~~~~~~l~~l~~~~~~gs~IliTTR~--~~--------~va~~~~~~~~~~~ 412 (1007)
..++. .+.+++++|+++ +.+.+..-.|..+|. .++||++|.+=. .+ +++..++. ..+.
T Consensus 497 ~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWpt--~~~sKLvvi~IaNTmdlPEr~l~nrvsSRlg~--tRi~ 572 (767)
T KOG1514|consen 497 NFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFDWPT--LKNSKLVVIAIANTMDLPERLLMNRVSSRLGL--TRIC 572 (767)
T ss_pred HHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHhcCCc--CCCCceEEEEecccccCHHHHhccchhhhccc--eeee
Confidence 44443 457899999875 222333333333332 456777765411 00 01112222 6777
Q ss_pred cCCCCHHHHHHHHHhhhccccccccCCChHHHHHHHHHHHHcCCCchHHHHHHHHh
Q 001843 413 VPGLGKNESWELFLKKARIAEDVLQSRSSELIKLKKQILNICDGLPLRVVLLAGLL 468 (1007)
Q Consensus 413 l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~g~~L 468 (1007)
++|.++++-.+.......+... -.....+-++++|+...|-.=.|+.+.-+..
T Consensus 573 F~pYth~qLq~Ii~~RL~~~~~---f~~~aielvarkVAavSGDaRraldic~RA~ 625 (767)
T KOG1514|consen 573 FQPYTHEQLQEIISARLKGLDA---FENKAIELVARKVAAVSGDARRALDICRRAA 625 (767)
T ss_pred cCCCCHHHHHHHHHHhhcchhh---cchhHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 7888888777777666554422 1234445556666666666666665554444
No 223
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=96.17 E-value=0.013 Score=62.35 Aligned_cols=91 Identities=16% Similarity=0.252 Sum_probs=52.5
Q ss_pred EEEEEEcCCCChHHHHHHHHHhhhhcccC----CCceEEEEecCCCCCCHHHHHHHHHHHHhhhhhhh------ccccCH
Q 001843 274 QVIALIGKAGSGKTTLARIVYNRVYVKRH----FTKRAWVHIPIMSMVEDRDVLADILKQIDESLLKV------EATLSA 343 (1007)
Q Consensus 274 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----F~~~~wv~~s~~~~~~~~~~l~~il~~l~~~~~~~------~~~~~~ 343 (1007)
.++.|+|.+|.|||+||.+++-....... -..++|++.. ..++.. -+.++++..+...... ....+.
T Consensus 20 ~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e--~~~~~~-rl~~~~~~~~~~~~~~~~~i~~~~~~~~ 96 (235)
T cd01123 20 SITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTE--GTFRPE-RLVQIAERFGLDPEEVLDNIYVARAYNS 96 (235)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCC--CCcCHH-HHHHHHHHhccChHhHhcCEEEEecCCH
Confidence 89999999999999999999753222221 3578999877 666543 3344444433221000 011122
Q ss_pred H---HHHHHHHHHcC-C-CcEEEEEeCcC
Q 001843 344 E---ELMWRITQALD-D-STFLIVMENAE 367 (1007)
Q Consensus 344 ~---~l~~~l~~~L~-~-kr~LlVlDdv~ 367 (1007)
. .....+.+.+. . +.-|||+|.+.
T Consensus 97 ~~l~~~l~~l~~~l~~~~~~~liVIDSis 125 (235)
T cd01123 97 DHQLQLLEELEAILIESSRIKLVIVDSVT 125 (235)
T ss_pred HHHHHHHHHHHHHHhhcCCeeEEEEeCcH
Confidence 2 23334444443 2 45588888875
No 224
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=96.17 E-value=0.02 Score=59.73 Aligned_cols=45 Identities=20% Similarity=0.325 Sum_probs=35.0
Q ss_pred EEEEEEcCCCChHHHHHHHHHhhhhcccCCCceEEEEecCCCCCCHHHHH
Q 001843 274 QVIALIGKAGSGKTTLARIVYNRVYVKRHFTKRAWVHIPIMSMVEDRDVL 323 (1007)
Q Consensus 274 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~l 323 (1007)
+++.|+|.+|+|||++|.+++.. .......++|++.. . ++...+.
T Consensus 13 ~i~~i~G~~GsGKT~l~~~~~~~--~~~~g~~v~yi~~e--~-~~~~rl~ 57 (209)
T TIGR02237 13 TITQIYGPPGSGKTNICMILAVN--AARQGKKVVYIDTE--G-LSPERFK 57 (209)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH--HHhCCCeEEEEECC--C-CCHHHHH
Confidence 89999999999999999998873 43445678999876 4 5544433
No 225
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=96.12 E-value=0.051 Score=60.48 Aligned_cols=72 Identities=11% Similarity=0.159 Sum_probs=47.6
Q ss_pred CCcEEEEEeCcCccCchhhhhhc-cccCCCCCCcEEEEEcCCCcccccccCCcceeeecCCCCHHHHHHHHHhh
Q 001843 356 DSTFLIVMENAEHQKSQVWDSFL-GKLCSFTQCGKIIITTSSTEDFVEPLGAAFSTLHVPGLGKNESWELFLKK 428 (1007)
Q Consensus 356 ~kr~LlVlDdv~~~~~~~~~~l~-~l~~~~~~gs~IliTTR~~~~va~~~~~~~~~~~l~~L~~~ea~~Lf~~~ 428 (1007)
+++-++|+|++..-+...-+.+. .+-.. ..++.+|++|.+...+.....+.+..+.+.+++.+++.+.+...
T Consensus 112 ~~~kV~iiEp~~~Ld~~a~naLLk~LEep-~~~~~~Ilvth~~~~ll~ti~SRc~~~~~~~~~~~~~~~~L~~~ 184 (325)
T PRK08699 112 GGLRVILIHPAESMNLQAANSLLKVLEEP-PPQVVFLLVSHAADKVLPTIKSRCRKMVLPAPSHEEALAYLRER 184 (325)
T ss_pred CCceEEEEechhhCCHHHHHHHHHHHHhC-cCCCEEEEEeCChHhChHHHHHHhhhhcCCCCCHHHHHHHHHhc
Confidence 33445566888755666666665 33322 34566777777665466665655689999999999998887654
No 226
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=96.09 E-value=0.015 Score=63.92 Aligned_cols=85 Identities=19% Similarity=0.224 Sum_probs=55.2
Q ss_pred EEEEEEcCCCChHHHHHHHHHhhhhcccCCCceEEEEecCCCCCCHHHHHHHHHHHHhhhhhhh--ccccCHHHHHHHHH
Q 001843 274 QVIALIGKAGSGKTTLARIVYNRVYVKRHFTKRAWVHIPIMSMVEDRDVLADILKQIDESLLKV--EATLSAEELMWRIT 351 (1007)
Q Consensus 274 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~l~~il~~l~~~~~~~--~~~~~~~~l~~~l~ 351 (1007)
+++-|+|++|+||||||.+++-. ....-..++||+.. ..++. ..+++++.+.... ....+.++....+.
T Consensus 56 ~iteI~Gp~GsGKTtLal~~~~~--~~~~g~~~vyId~E--~~~~~-----~~a~~lGvd~~~l~v~~p~~~eq~l~i~~ 126 (325)
T cd00983 56 RIIEIYGPESSGKTTLALHAIAE--AQKLGGTVAFIDAE--HALDP-----VYAKKLGVDLDNLLISQPDTGEQALEIAD 126 (325)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH--HHHcCCCEEEECcc--ccHHH-----HHHHHcCCCHHHheecCCCCHHHHHHHHH
Confidence 89999999999999999998773 33445568899876 55554 2445554431111 12334555556665
Q ss_pred HHcCC-CcEEEEEeCcC
Q 001843 352 QALDD-STFLIVMENAE 367 (1007)
Q Consensus 352 ~~L~~-kr~LlVlDdv~ 367 (1007)
..++. ..-+||+|.|-
T Consensus 127 ~li~s~~~~lIVIDSva 143 (325)
T cd00983 127 SLVRSGAVDLIVVDSVA 143 (325)
T ss_pred HHHhccCCCEEEEcchH
Confidence 55543 45589999874
No 227
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=96.07 E-value=0.016 Score=63.77 Aligned_cols=85 Identities=15% Similarity=0.223 Sum_probs=55.1
Q ss_pred EEEEEEcCCCChHHHHHHHHHhhhhcccCCCceEEEEecCCCCCCHHHHHHHHHHHHhhhhhhh--ccccCHHHHHHHHH
Q 001843 274 QVIALIGKAGSGKTTLARIVYNRVYVKRHFTKRAWVHIPIMSMVEDRDVLADILKQIDESLLKV--EATLSAEELMWRIT 351 (1007)
Q Consensus 274 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~l~~il~~l~~~~~~~--~~~~~~~~l~~~l~ 351 (1007)
+++-|+|.+|+||||||.+++.. ....-..++||+.. ..++.. .+++++.+.... ......++....+.
T Consensus 56 ~iteI~G~~GsGKTtLaL~~~~~--~~~~g~~v~yId~E--~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~~~~ 126 (321)
T TIGR02012 56 RIIEIYGPESSGKTTLALHAIAE--AQKAGGTAAFIDAE--HALDPV-----YARKLGVDIDNLLVSQPDTGEQALEIAE 126 (321)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEEccc--chhHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHH
Confidence 89999999999999999998773 33444567899776 555542 355554431111 12334555555555
Q ss_pred HHcC-CCcEEEEEeCcC
Q 001843 352 QALD-DSTFLIVMENAE 367 (1007)
Q Consensus 352 ~~L~-~kr~LlVlDdv~ 367 (1007)
..++ +..-+||+|.|-
T Consensus 127 ~li~~~~~~lIVIDSv~ 143 (321)
T TIGR02012 127 TLVRSGAVDIIVVDSVA 143 (321)
T ss_pred HHhhccCCcEEEEcchh
Confidence 5554 355699999875
No 228
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=96.05 E-value=0.017 Score=62.02 Aligned_cols=37 Identities=27% Similarity=0.411 Sum_probs=29.0
Q ss_pred EEEEEEcCCCChHHHHHHHHHhhhhcccCCCceEEEEec
Q 001843 274 QVIALIGKAGSGKTTLARIVYNRVYVKRHFTKRAWVHIP 312 (1007)
Q Consensus 274 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s 312 (1007)
.-+.++|.+|+|||.||.++.+. +.+.--.+.++++.
T Consensus 106 ~nl~l~G~~G~GKThLa~Ai~~~--l~~~g~sv~f~~~~ 142 (254)
T COG1484 106 ENLVLLGPPGVGKTHLAIAIGNE--LLKAGISVLFITAP 142 (254)
T ss_pred CcEEEECCCCCcHHHHHHHHHHH--HHHcCCeEEEEEHH
Confidence 56789999999999999999995 44433456777765
No 229
>CHL00095 clpC Clp protease ATP binding subunit
Probab=96.04 E-value=0.018 Score=72.67 Aligned_cols=92 Identities=15% Similarity=0.260 Sum_probs=50.8
Q ss_pred EEEEEEcCCCChHHHHHHHHHhhhhcccCCCceEEEEecCCCCCCHHHHHHHHHHHHhhhhhhhccccCHHHHHHHHHHH
Q 001843 274 QVIALIGKAGSGKTTLARIVYNRVYVKRHFTKRAWVHIPIMSMVEDRDVLADILKQIDESLLKVEATLSAEELMWRITQA 353 (1007)
Q Consensus 274 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~l~~il~~l~~~~~~~~~~~~~~~l~~~l~~~ 353 (1007)
.++.++|+.|+|||+||+.+++ .+-..-...+-++.+ .-.+...+ .. -++.+ +.....+. ...+.+.
T Consensus 540 ~~~lf~Gp~GvGKt~lA~~LA~--~l~~~~~~~~~~d~s--~~~~~~~~-~~---l~g~~--~gyvg~~~---~~~l~~~ 606 (821)
T CHL00095 540 ASFLFSGPTGVGKTELTKALAS--YFFGSEDAMIRLDMS--EYMEKHTV-SK---LIGSP--PGYVGYNE---GGQLTEA 606 (821)
T ss_pred eEEEEECCCCCcHHHHHHHHHH--HhcCCccceEEEEch--hccccccH-HH---hcCCC--CcccCcCc---cchHHHH
Confidence 5677999999999999999998 332222233444444 21111111 11 11211 00011111 1123444
Q ss_pred cCCCc-EEEEEeCcCccCchhhhhhc
Q 001843 354 LDDST-FLIVMENAEHQKSQVWDSFL 378 (1007)
Q Consensus 354 L~~kr-~LlVlDdv~~~~~~~~~~l~ 378 (1007)
++.++ .+++||+++..+++.++.+.
T Consensus 607 ~~~~p~~VvllDeieka~~~v~~~Ll 632 (821)
T CHL00095 607 VRKKPYTVVLFDEIEKAHPDIFNLLL 632 (821)
T ss_pred HHhCCCeEEEECChhhCCHHHHHHHH
Confidence 54555 48999999988888888777
No 230
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.02 E-value=0.083 Score=63.67 Aligned_cols=158 Identities=15% Similarity=0.248 Sum_probs=90.3
Q ss_pred CcEEEEEEcCCCChHHHHHHHHHhhhhcccCCCceEEEEecCCCCCCHHHHHHHHHHHHhhhhhhhccccCHHHHHHHHH
Q 001843 272 TTQVIALIGKAGSGKTTLARIVYNRVYVKRHFTKRAWVHIPIMSMVEDRDVLADILKQIDESLLKVEATLSAEELMWRIT 351 (1007)
Q Consensus 272 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~l~~il~~l~~~~~~~~~~~~~~~l~~~l~ 351 (1007)
-++=+-++|++|.|||-||++++-...| =|+.++ . .++.+.+.+. ......+...
T Consensus 343 iPkGvLL~GPPGTGKTLLAKAiAGEAgV-------PF~svS--G--------SEFvE~~~g~--------~asrvr~lf~ 397 (774)
T KOG0731|consen 343 IPKGVLLVGPPGTGKTLLAKAIAGEAGV-------PFFSVS--G--------SEFVEMFVGV--------GASRVRDLFP 397 (774)
T ss_pred CcCceEEECCCCCcHHHHHHHHhcccCC-------ceeeec--h--------HHHHHHhccc--------chHHHHHHHH
Confidence 3477889999999999999999994332 245554 1 1222222221 0111111122
Q ss_pred HHcCCCcEEEEEeCcCcc---------------CchhhhhhccccCCCCCCcEEEE--EcCCCccccccc----CCccee
Q 001843 352 QALDDSTFLIVMENAEHQ---------------KSQVWDSFLGKLCSFTQCGKIII--TTSSTEDFVEPL----GAAFST 410 (1007)
Q Consensus 352 ~~L~~kr~LlVlDdv~~~---------------~~~~~~~l~~l~~~~~~gs~Ili--TTR~~~~va~~~----~~~~~~ 410 (1007)
..=...+++|.+|+++.. ....++++..-.++|..++.||+ +|...+ +.... +-....
T Consensus 398 ~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~~vi~~a~tnr~d-~ld~allrpGRfdr~ 476 (774)
T KOG0731|consen 398 LARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSKGVIVLAATNRPD-ILDPALLRPGRFDRQ 476 (774)
T ss_pred HhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCCcEEEEeccCCcc-ccCHHhcCCCccccc
Confidence 222356889999988631 12233444422234343443333 555555 44321 111277
Q ss_pred eecCCCCHHHHHHHHHhhhccccccccCCChHHHHHHHHHHHHcCCCchHH
Q 001843 411 LHVPGLGKNESWELFLKKARIAEDVLQSRSSELIKLKKQILNICDGLPLRV 461 (1007)
Q Consensus 411 ~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai 461 (1007)
+.++.-+...-.++|.-++..... ..+...+++ |+...-|.+=|.
T Consensus 477 i~i~~p~~~~r~~i~~~h~~~~~~-----~~e~~dl~~-~a~~t~gf~gad 521 (774)
T KOG0731|consen 477 IQIDLPDVKGRASILKVHLRKKKL-----DDEDVDLSK-LASLTPGFSGAD 521 (774)
T ss_pred eeccCCchhhhHHHHHHHhhccCC-----CcchhhHHH-HHhcCCCCcHHH
Confidence 888888899999999998876443 234455666 888888887654
No 231
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=96.02 E-value=0.025 Score=60.84 Aligned_cols=91 Identities=19% Similarity=0.268 Sum_probs=53.8
Q ss_pred EEEEEEcCCCChHHHHHHHHHhhhhcccC----CCceEEEEecCCCCCCHHHHHHHHHHHHhhhhhhh------ccccCH
Q 001843 274 QVIALIGKAGSGKTTLARIVYNRVYVKRH----FTKRAWVHIPIMSMVEDRDVLADILKQIDESLLKV------EATLSA 343 (1007)
Q Consensus 274 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----F~~~~wv~~s~~~~~~~~~~l~~il~~l~~~~~~~------~~~~~~ 343 (1007)
.|.-|+|.+|+|||.|+.+++-...+... =..++|++-. ..|+...+. +|++....+.... ....+.
T Consensus 39 ~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe--~~f~~~Rl~-~i~~~~~~~~~~~l~~I~v~~~~~~ 115 (256)
T PF08423_consen 39 SITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTE--GTFSPERLQ-QIAERFGLDPEEILDNIFVIRVFDL 115 (256)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESS--SSS-HHHHH-HHHHHTTS-HHHHHHTEEEEE-SSH
T ss_pred cEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCC--CCCCHHHHH-HHhhccccccchhhhceeeeecCCH
Confidence 79999999999999999988764443322 2348999977 778776654 5666544321000 012233
Q ss_pred HHHHHHH---HHHcC-CCcEEEEEeCcC
Q 001843 344 EELMWRI---TQALD-DSTFLIVMENAE 367 (1007)
Q Consensus 344 ~~l~~~l---~~~L~-~kr~LlVlDdv~ 367 (1007)
+++...+ ...+. .+--|||+|.+-
T Consensus 116 ~~l~~~L~~l~~~l~~~~ikLIVIDSIa 143 (256)
T PF08423_consen 116 EELLELLEQLPKLLSESKIKLIVIDSIA 143 (256)
T ss_dssp HHHHHHHHHHHHHHHHSCEEEEEEETSS
T ss_pred HHHHHHHHHHHhhccccceEEEEecchH
Confidence 3333333 33332 333488888874
No 232
>PRK09354 recA recombinase A; Provisional
Probab=96.01 E-value=0.019 Score=63.65 Aligned_cols=85 Identities=16% Similarity=0.225 Sum_probs=56.6
Q ss_pred EEEEEEcCCCChHHHHHHHHHhhhhcccCCCceEEEEecCCCCCCHHHHHHHHHHHHhhhhhhh--ccccCHHHHHHHHH
Q 001843 274 QVIALIGKAGSGKTTLARIVYNRVYVKRHFTKRAWVHIPIMSMVEDRDVLADILKQIDESLLKV--EATLSAEELMWRIT 351 (1007)
Q Consensus 274 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~l~~il~~l~~~~~~~--~~~~~~~~l~~~l~ 351 (1007)
+++-|+|.+|+||||||.+++.. ....-..++||+.. ..++. ..+++++.+.... ......++....+.
T Consensus 61 ~IteI~G~~GsGKTtLal~~~~~--~~~~G~~~~yId~E--~s~~~-----~~a~~lGvdld~lli~qp~~~Eq~l~i~~ 131 (349)
T PRK09354 61 RIVEIYGPESSGKTTLALHAIAE--AQKAGGTAAFIDAE--HALDP-----VYAKKLGVDIDNLLVSQPDTGEQALEIAD 131 (349)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEECCc--cchHH-----HHHHHcCCCHHHeEEecCCCHHHHHHHHH
Confidence 89999999999999999998873 33445678899876 66654 3455555432111 12334555556665
Q ss_pred HHcCC-CcEEEEEeCcC
Q 001843 352 QALDD-STFLIVMENAE 367 (1007)
Q Consensus 352 ~~L~~-kr~LlVlDdv~ 367 (1007)
..++. ..-+||+|.|-
T Consensus 132 ~li~s~~~~lIVIDSva 148 (349)
T PRK09354 132 TLVRSGAVDLIVVDSVA 148 (349)
T ss_pred HHhhcCCCCEEEEeChh
Confidence 55543 45599999875
No 233
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=95.99 E-value=0.013 Score=70.79 Aligned_cols=95 Identities=15% Similarity=0.241 Sum_probs=57.7
Q ss_pred CCcEEEEEEcCCCChHHHHHHHHHhhhhcccCCCceEEEEecCCCCCCHHHHHHHHHHHHhhhhhhhccccCHHHHHHHH
Q 001843 271 TTTQVIALIGKAGSGKTTLARIVYNRVYVKRHFTKRAWVHIPIMSMVEDRDVLADILKQIDESLLKVEATLSAEELMWRI 350 (1007)
Q Consensus 271 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~l~~il~~l~~~~~~~~~~~~~~~l~~~l 350 (1007)
.+..+...+|+.|+|||-||++++. .+-+.=+..+-+++| .|.-...... -++.+ +.....+. ...|
T Consensus 519 rPigsFlF~GPTGVGKTELAkaLA~--~Lfg~e~aliR~DMS---Ey~EkHsVSr---LIGaP--PGYVGyee---GG~L 585 (786)
T COG0542 519 RPIGSFLFLGPTGVGKTELAKALAE--ALFGDEQALIRIDMS---EYMEKHSVSR---LIGAP--PGYVGYEE---GGQL 585 (786)
T ss_pred CCceEEEeeCCCcccHHHHHHHHHH--HhcCCCccceeechH---HHHHHHHHHH---HhCCC--CCCceecc---ccch
Confidence 3447899999999999999999998 232111334444444 2222222222 22322 11111111 3456
Q ss_pred HHHcCCCcE-EEEEeCcCccCchhhhhhc
Q 001843 351 TQALDDSTF-LIVMENAEHQKSQVWDSFL 378 (1007)
Q Consensus 351 ~~~L~~kr~-LlVlDdv~~~~~~~~~~l~ 378 (1007)
-+..+.++| +|.||.|...+++..+-+.
T Consensus 586 TEaVRr~PySViLlDEIEKAHpdV~nilL 614 (786)
T COG0542 586 TEAVRRKPYSVILLDEIEKAHPDVFNLLL 614 (786)
T ss_pred hHhhhcCCCeEEEechhhhcCHHHHHHHH
Confidence 667778888 8889999988888888776
No 234
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=95.97 E-value=0.018 Score=67.00 Aligned_cols=95 Identities=9% Similarity=0.044 Sum_probs=63.6
Q ss_pred CCcEEEEEeCcCccCchhhhhhc-cccCCCCCCcEEEEEcCCCcccccccCCcceeeecCCCCHHHHHHHHHhhhccccc
Q 001843 356 DSTFLIVMENAEHQKSQVWDSFL-GKLCSFTQCGKIIITTSSTEDFVEPLGAAFSTLHVPGLGKNESWELFLKKARIAED 434 (1007)
Q Consensus 356 ~kr~LlVlDdv~~~~~~~~~~l~-~l~~~~~~gs~IliTTR~~~~va~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~ 434 (1007)
++-=..|+|.|.-.+...|+.+. .+-.. ...-+.|..|.+.+.+....-+.++.|.++.++.++-...+...+.....
T Consensus 118 ~ryKVyiIDEvHMLS~~afNALLKTLEEP-P~hV~FIlATTe~~Kip~TIlSRcq~f~fkri~~~~I~~~L~~i~~~E~I 196 (515)
T COG2812 118 GRYKVYIIDEVHMLSKQAFNALLKTLEEP-PSHVKFILATTEPQKIPNTILSRCQRFDFKRLDLEEIAKHLAAILDKEGI 196 (515)
T ss_pred ccceEEEEecHHhhhHHHHHHHhcccccC-ccCeEEEEecCCcCcCchhhhhccccccccCCCHHHHHHHHHHHHHhcCC
Confidence 34448999999877888888887 44333 33445555555544487777777799999999999888888776654332
Q ss_pred cccCCChHHHHHHHHHHHHcCCC
Q 001843 435 VLQSRSSELIKLKKQILNICDGL 457 (1007)
Q Consensus 435 ~~~~~~~~~~~~~~~I~~~c~Gl 457 (1007)
....+...-|++..+|.
T Consensus 197 ------~~e~~aL~~ia~~a~Gs 213 (515)
T COG2812 197 ------NIEEDALSLIARAAEGS 213 (515)
T ss_pred ------ccCHHHHHHHHHHcCCC
Confidence 22344555666666663
No 235
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=95.96 E-value=0.0096 Score=59.35 Aligned_cols=103 Identities=19% Similarity=0.241 Sum_probs=56.0
Q ss_pred CCCeEEEeecCCCCCCcccccCCCCCcEEEecccC-CCCCcCccCCCCCCceEEEEEeeecCC-CCcCccccCCCCcEEE
Q 001843 819 ELHSLKLICETPSYLPLLEMAEHYKLQKLYLSGHL-PPNSVIGDRSFPPNVVTLTLSQLRLEY-DPMPILGRLRQLKILR 896 (1007)
Q Consensus 819 ~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~L~g~~-~~lp~~~i~~~l~~L~~L~L~~~~l~~-~~~~~l~~Lp~L~~L~ 896 (1007)
+...++|+++... .+..|..++.|..|.|..|. ..+.. .+..++++|..|.|.+|.+.. ..+..+..+|+|++|.
T Consensus 43 ~~d~iDLtdNdl~--~l~~lp~l~rL~tLll~nNrIt~I~p-~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Lt 119 (233)
T KOG1644|consen 43 QFDAIDLTDNDLR--KLDNLPHLPRLHTLLLNNNRITRIDP-DLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLT 119 (233)
T ss_pred ccceecccccchh--hcccCCCccccceEEecCCcceeecc-chhhhccccceEEecCcchhhhhhcchhccCCccceee
Confidence 3444455443322 24445556666677666655 55554 555556777777777776533 2345566677777777
Q ss_pred eecCCcCCCcee--ecCCCCCCCcEEEecc
Q 001843 897 LFGGSYTGEEMS--CSSGEFPNLLVLKLWK 924 (1007)
Q Consensus 897 L~~~~~~~~~l~--~~~~~fp~L~~L~L~~ 924 (1007)
+-+|......-+ .....+|+|+.|++..
T Consensus 120 ll~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 120 LLGNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred ecCCchhcccCceeEEEEecCcceEeehhh
Confidence 765543221110 1122466666666654
No 236
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=95.95 E-value=0.019 Score=70.81 Aligned_cols=89 Identities=13% Similarity=0.201 Sum_probs=49.7
Q ss_pred EEEEEEcCCCChHHHHHHHHHhhhhcccCCCceEEEEecCCCCCCHHHHHHHHHHHHhhhhhhhccccCHHHHHHHHHHH
Q 001843 274 QVIALIGKAGSGKTTLARIVYNRVYVKRHFTKRAWVHIPIMSMVEDRDVLADILKQIDESLLKVEATLSAEELMWRITQA 353 (1007)
Q Consensus 274 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~l~~il~~l~~~~~~~~~~~~~~~l~~~l~~~ 353 (1007)
..+.++|+.|+|||++|+.++. .... ..+.++++ .-.... ....+ ++.+ ......+ ....+.+.
T Consensus 489 ~~~Lf~GP~GvGKT~lAk~LA~--~l~~---~~i~id~s--e~~~~~-~~~~L---iG~~--~gyvg~~---~~g~L~~~ 552 (758)
T PRK11034 489 GSFLFAGPTGVGKTEVTVQLSK--ALGI---ELLRFDMS--EYMERH-TVSRL---IGAP--PGYVGFD---QGGLLTDA 552 (758)
T ss_pred ceEEEECCCCCCHHHHHHHHHH--HhCC---CcEEeech--hhcccc-cHHHH---cCCC--CCccccc---ccchHHHH
Confidence 6789999999999999999988 3432 23445544 221111 11111 1211 0000111 11123333
Q ss_pred cCC-CcEEEEEeCcCccCchhhhhhc
Q 001843 354 LDD-STFLIVMENAEHQKSQVWDSFL 378 (1007)
Q Consensus 354 L~~-kr~LlVlDdv~~~~~~~~~~l~ 378 (1007)
++. ...+|+||+++..+++.++.+.
T Consensus 553 v~~~p~sVlllDEieka~~~v~~~LL 578 (758)
T PRK11034 553 VIKHPHAVLLLDEIEKAHPDVFNLLL 578 (758)
T ss_pred HHhCCCcEEEeccHhhhhHHHHHHHH
Confidence 333 3459999999987787777776
No 237
>PRK04296 thymidine kinase; Provisional
Probab=95.94 E-value=0.015 Score=59.63 Aligned_cols=114 Identities=13% Similarity=0.024 Sum_probs=64.8
Q ss_pred EEEEEEcCCCChHHHHHHHHHhhhhcccCCCceEEEEecCCCCCCHHHHHHHHHHHHhhhhhhhccccCHHHHHHHHHHH
Q 001843 274 QVIALIGKAGSGKTTLARIVYNRVYVKRHFTKRAWVHIPIMSMVEDRDVLADILKQIDESLLKVEATLSAEELMWRITQA 353 (1007)
Q Consensus 274 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~l~~il~~l~~~~~~~~~~~~~~~l~~~l~~~ 353 (1007)
.++.|+|..|.||||+|...+. +...+...++.+. ..++.......++.+++..... .......++...+.+
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~--~~~~~g~~v~i~k----~~~d~~~~~~~i~~~lg~~~~~-~~~~~~~~~~~~~~~- 74 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAY--NYEERGMKVLVFK----PAIDDRYGEGKVVSRIGLSREA-IPVSSDTDIFELIEE- 74 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHH--HHHHcCCeEEEEe----ccccccccCCcEecCCCCcccc-eEeCChHHHHHHHHh-
Confidence 6889999999999999999988 4434433444442 2222222233445555432111 012334555555555
Q ss_pred cCCCcEEEEEeCcCccCchhhhhhc-cccCCCCCCcEEEEEcCCCc
Q 001843 354 LDDSTFLIVMENAEHQKSQVWDSFL-GKLCSFTQCGKIIITTSSTE 398 (1007)
Q Consensus 354 L~~kr~LlVlDdv~~~~~~~~~~l~-~l~~~~~~gs~IliTTR~~~ 398 (1007)
..++.-+||+|.+..-+.++..++. .+. ..|..|++|.++..
T Consensus 75 ~~~~~dvviIDEaq~l~~~~v~~l~~~l~---~~g~~vi~tgl~~~ 117 (190)
T PRK04296 75 EGEKIDCVLIDEAQFLDKEQVVQLAEVLD---DLGIPVICYGLDTD 117 (190)
T ss_pred hCCCCCEEEEEccccCCHHHHHHHHHHHH---HcCCeEEEEecCcc
Confidence 2334459999999643333333333 322 45778999999865
No 238
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=95.93 E-value=0.006 Score=57.40 Aligned_cols=22 Identities=50% Similarity=0.729 Sum_probs=20.6
Q ss_pred EEEEEcCCCChHHHHHHHHHhh
Q 001843 275 VIALIGKAGSGKTTLARIVYNR 296 (1007)
Q Consensus 275 vi~I~G~gGiGKTtLa~~v~~~ 296 (1007)
||.|.|++|+||||+|+.+++.
T Consensus 1 vI~I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999983
No 239
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=95.90 E-value=0.015 Score=64.01 Aligned_cols=27 Identities=19% Similarity=0.501 Sum_probs=24.4
Q ss_pred CCCcEEEEEEcCCCChHHHHHHHHHhh
Q 001843 270 TTTTQVIALIGKAGSGKTTLARIVYNR 296 (1007)
Q Consensus 270 ~~~~~vi~I~G~gGiGKTtLa~~v~~~ 296 (1007)
-..++.++|||++|.|||.+|+++++.
T Consensus 145 ik~PlgllL~GPPGcGKTllAraiA~e 171 (413)
T PLN00020 145 IKVPLILGIWGGKGQGKSFQCELVFKK 171 (413)
T ss_pred CCCCeEEEeeCCCCCCHHHHHHHHHHH
Confidence 456699999999999999999999993
No 240
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=95.87 E-value=0.047 Score=57.68 Aligned_cols=89 Identities=13% Similarity=0.179 Sum_probs=53.5
Q ss_pred EEEEEEcCCCChHHHHHHHHHhhhhcccCC------CceEEEEecCCCCCCHHHHHHHHHHHHhhhhhh------hcccc
Q 001843 274 QVIALIGKAGSGKTTLARIVYNRVYVKRHF------TKRAWVHIPIMSMVEDRDVLADILKQIDESLLK------VEATL 341 (1007)
Q Consensus 274 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F------~~~~wv~~s~~~~~~~~~~l~~il~~l~~~~~~------~~~~~ 341 (1007)
.++.|+|.+|.|||+||.+++.. ....- ..++|++.. ..++...+ .++.+........ .....
T Consensus 20 ~v~~I~G~~GsGKT~l~~~ia~~--~~~~~~~~g~~~~v~yi~~e--~~~~~~rl-~~~~~~~~~~~~~~~~~i~~~~~~ 94 (226)
T cd01393 20 RITEIFGEFGSGKTQLCLQLAVE--AQLPGELGGLEGKVVYIDTE--GAFRPERL-VQLAVRFGLDPEEVLDNIYVARPY 94 (226)
T ss_pred cEEEEeCCCCCChhHHHHHHHHH--hhcccccCCCcceEEEEecC--CCCCHHHH-HHHHHHhccchhhhhccEEEEeCC
Confidence 89999999999999999999873 22233 457898876 66665433 3444433221000 01223
Q ss_pred CHHHHHHHHHHHcC---C-CcEEEEEeCcC
Q 001843 342 SAEELMWRITQALD---D-STFLIVMENAE 367 (1007)
Q Consensus 342 ~~~~l~~~l~~~L~---~-kr~LlVlDdv~ 367 (1007)
+.+++...+.+... . +.-|||+|.+.
T Consensus 95 ~~~~~~~~l~~~~~~~~~~~~~lvVIDsis 124 (226)
T cd01393 95 NGEQQLEIVEELERIMSSGRVDLVVVDSVA 124 (226)
T ss_pred CHHHHHHHHHHHHHHhhcCCeeEEEEcCcc
Confidence 45555555555442 3 44488888874
No 241
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=95.82 E-value=0.017 Score=61.14 Aligned_cols=37 Identities=19% Similarity=0.314 Sum_probs=30.4
Q ss_pred EEEEEEcCCCChHHHHHHHHHhhhhcccCCCceEEEEec
Q 001843 274 QVIALIGKAGSGKTTLARIVYNRVYVKRHFTKRAWVHIP 312 (1007)
Q Consensus 274 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s 312 (1007)
.++.|+|.+|+|||++|.+++.. ....-..++|++..
T Consensus 24 ~i~~i~G~~GsGKT~l~~~la~~--~~~~~~~v~yi~~e 60 (225)
T PRK09361 24 TITQIYGPPGSGKTNICLQLAVE--AAKNGKKVIYIDTE 60 (225)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH--HHHCCCeEEEEECC
Confidence 89999999999999999999884 33445678898764
No 242
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.79 E-value=0.072 Score=60.38 Aligned_cols=159 Identities=21% Similarity=0.192 Sum_probs=91.0
Q ss_pred CcEEEEEEcCCCChHHHHHHHHHhhhhcccCCCceEEEEecCCCCCCHHHHHHHHHHHHhhhhhhhccccCHHHHHHHHH
Q 001843 272 TTQVIALIGKAGSGKTTLARIVYNRVYVKRHFTKRAWVHIPIMSMVEDRDVLADILKQIDESLLKVEATLSAEELMWRIT 351 (1007)
Q Consensus 272 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~l~~il~~l~~~~~~~~~~~~~~~l~~~l~ 351 (1007)
+...+.+.|.+|+|||+||.+++.+ ..|+.+=-++-. +. ++. .+...-..+.+...
T Consensus 537 ~lvSvLl~Gp~~sGKTaLAA~iA~~----S~FPFvKiiSpe-----~m----------iG~-----sEsaKc~~i~k~F~ 592 (744)
T KOG0741|consen 537 PLVSVLLEGPPGSGKTALAAKIALS----SDFPFVKIISPE-----DM----------IGL-----SESAKCAHIKKIFE 592 (744)
T ss_pred cceEEEEecCCCCChHHHHHHHHhh----cCCCeEEEeChH-----Hc----------cCc-----cHHHHHHHHHHHHH
Confidence 3478889999999999999999983 567754333211 00 000 01111222233344
Q ss_pred HHcCCCcEEEEEeCcCccCchhhhhhc----------------cccCCCCCCcEEEEEcCCCcccccccCCcc---eeee
Q 001843 352 QALDDSTFLIVMENAEHQKSQVWDSFL----------------GKLCSFTQCGKIIITTSSTEDFVEPLGAAF---STLH 412 (1007)
Q Consensus 352 ~~L~~kr~LlVlDdv~~~~~~~~~~l~----------------~l~~~~~~gs~IliTTR~~~~va~~~~~~~---~~~~ 412 (1007)
...+..--.||+||+. ..-+|..+. ..|.. ++.--|+-||.... |...|+-.. ..+.
T Consensus 593 DAYkS~lsiivvDdiE--rLiD~vpIGPRfSN~vlQaL~VllK~~ppk-g~kLli~~TTS~~~-vL~~m~i~~~F~~~i~ 668 (744)
T KOG0741|consen 593 DAYKSPLSIIVVDDIE--RLLDYVPIGPRFSNLVLQALLVLLKKQPPK-GRKLLIFGTTSRRE-VLQEMGILDCFSSTIH 668 (744)
T ss_pred HhhcCcceEEEEcchh--hhhcccccCchhhHHHHHHHHHHhccCCCC-CceEEEEecccHHH-HHHHcCHHHhhhheee
Confidence 4455666799999997 444443322 22333 23333444776666 777765322 6888
Q ss_pred cCCCCH-HHHHHHHHhhh-ccccccccCCChHHHHHHHHHHHHcCCCchHHHHHHHHh
Q 001843 413 VPGLGK-NESWELFLKKA-RIAEDVLQSRSSELIKLKKQILNICDGLPLRVVLLAGLL 468 (1007)
Q Consensus 413 l~~L~~-~ea~~Lf~~~a-~~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~g~~L 468 (1007)
++.++. ++..+.+...- |. +.+.+.++.+.+.+| +-.+|+-+-.++
T Consensus 669 Vpnl~~~~~~~~vl~~~n~fs--------d~~~~~~~~~~~~~~--~~vgIKklL~li 716 (744)
T KOG0741|consen 669 VPNLTTGEQLLEVLEELNIFS--------DDEVRAIAEQLLSKK--VNVGIKKLLMLI 716 (744)
T ss_pred cCccCchHHHHHHHHHccCCC--------cchhHHHHHHHhccc--cchhHHHHHHHH
Confidence 888876 77777776653 33 234456666776666 334444444444
No 243
>PHA00729 NTP-binding motif containing protein
Probab=95.78 E-value=0.028 Score=58.35 Aligned_cols=24 Identities=42% Similarity=0.430 Sum_probs=21.7
Q ss_pred cEEEEEEcCCCChHHHHHHHHHhh
Q 001843 273 TQVIALIGKAGSGKTTLARIVYNR 296 (1007)
Q Consensus 273 ~~vi~I~G~gGiGKTtLa~~v~~~ 296 (1007)
..-|.|.|.+|+||||||..+++.
T Consensus 17 f~nIlItG~pGvGKT~LA~aLa~~ 40 (226)
T PHA00729 17 FVSAVIFGKQGSGKTTYALKVARD 40 (226)
T ss_pred eEEEEEECCCCCCHHHHHHHHHHH
Confidence 367899999999999999999983
No 244
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=95.75 E-value=0.0094 Score=57.63 Aligned_cols=88 Identities=17% Similarity=0.155 Sum_probs=49.9
Q ss_pred EEEEEEcCCCChHHHHHHHHHhhhhc-ccCCCceEEEEecCCCCCCHHHHHHHHHHHHhhhhhhhccccCHHHHHHHHHH
Q 001843 274 QVIALIGKAGSGKTTLARIVYNRVYV-KRHFTKRAWVHIPIMSMVEDRDVLADILKQIDESLLKVEATLSAEELMWRITQ 352 (1007)
Q Consensus 274 ~vi~I~G~gGiGKTtLa~~v~~~~~~-~~~F~~~~wv~~s~~~~~~~~~~l~~il~~l~~~~~~~~~~~~~~~l~~~l~~ 352 (1007)
.-|.|.|..|+||+++|+.++..... ...|.. +.+. . .. .+.+.+
T Consensus 22 ~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~---~~~~--~-------------------------~~----~~~l~~ 67 (138)
T PF14532_consen 22 SPVLITGEPGTGKSLLARALHRYSGRANGPFIV---IDCA--S-------------------------LP----AELLEQ 67 (138)
T ss_dssp S-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCC---CCHH--C-------------------------TC----HHHHHH
T ss_pred CcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEE---echh--h-------------------------Cc----HHHHHH
Confidence 56789999999999999999984221 111211 1111 0 01 111111
Q ss_pred HcCCCcEEEEEeCcCccCchhhhhhc-cccCCCCCCcEEEEEcCCCc
Q 001843 353 ALDDSTFLIVMENAEHQKSQVWDSFL-GKLCSFTQCGKIIITTSSTE 398 (1007)
Q Consensus 353 ~L~~kr~LlVlDdv~~~~~~~~~~l~-~l~~~~~~gs~IliTTR~~~ 398 (1007)
.+.--|+|+|++.-+.+....+. .+...-....|+|.||+..-
T Consensus 68 ---a~~gtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~RlI~ss~~~l 111 (138)
T PF14532_consen 68 ---AKGGTLYLKNIDRLSPEAQRRLLDLLKRQERSNVRLIASSSQDL 111 (138)
T ss_dssp ---CTTSEEEEECGCCS-HHHHHHHHHHHHHCTTTTSEEEEEECC-C
T ss_pred ---cCCCEEEECChHHCCHHHHHHHHHHHHhcCCCCeEEEEEeCCCH
Confidence 14446789999865666666666 44322146779999988653
No 245
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=95.75 E-value=0.0027 Score=65.69 Aligned_cols=79 Identities=22% Similarity=0.193 Sum_probs=45.1
Q ss_pred CCCcccEEEecCCCCCCc---CCCccccCCCcCcEEecccCCC----cccCc-------ccccCCCCCEEeecCCccc-c
Q 001843 667 RLGMLKVLDLEGVYKPML---TNNNALGRLPFLEYLGLRSTFI----DSLPD-------STPILFCLATLDVSHTKVQ-R 731 (1007)
Q Consensus 667 ~l~~Lr~L~Ls~~~l~~~---~lp~~i~~L~~Lr~L~L~~n~i----~~LP~-------~i~~L~~L~~L~L~~~~l~-~ 731 (1007)
.+..+..++||+|.+..+ .+...|.+-.+|+..+++.-.. .++|+ .+-++++|++.+|+.|-+. .
T Consensus 28 ~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~ 107 (388)
T COG5238 28 MMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSE 107 (388)
T ss_pred hhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcc
Confidence 466777777777776521 1234455566777777765221 13332 3456778888888877333 4
Q ss_pred ccccccc-------cceeccc
Q 001843 732 LPYAFWP-------SRHLYLN 745 (1007)
Q Consensus 732 lP~~i~~-------Lr~L~l~ 745 (1007)
.|..++. |.||.++
T Consensus 108 ~~e~L~d~is~~t~l~HL~l~ 128 (388)
T COG5238 108 FPEELGDLISSSTDLVHLKLN 128 (388)
T ss_pred cchHHHHHHhcCCCceeEEee
Confidence 4443332 2667666
No 246
>CHL00195 ycf46 Ycf46; Provisional
Probab=95.75 E-value=0.045 Score=64.18 Aligned_cols=134 Identities=13% Similarity=0.105 Sum_probs=71.4
Q ss_pred CcEEEEEEcCCCChHHHHHHHHHhhhhcccCCCceEEEEecCCCCCCHHHHHHHHHHHHhhhhhhhccccCHHHHHHHHH
Q 001843 272 TTQVIALIGKAGSGKTTLARIVYNRVYVKRHFTKRAWVHIPIMSMVEDRDVLADILKQIDESLLKVEATLSAEELMWRIT 351 (1007)
Q Consensus 272 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~l~~il~~l~~~~~~~~~~~~~~~l~~~l~ 351 (1007)
.++-|.++|++|.|||.+|+++++ ...-.| +-+..+ . ++ ... ...+...+.+.+.
T Consensus 258 ~pkGILL~GPpGTGKTllAkaiA~--e~~~~~---~~l~~~--~------l~----~~~--------vGese~~l~~~f~ 312 (489)
T CHL00195 258 TPRGLLLVGIQGTGKSLTAKAIAN--DWQLPL---LRLDVG--K------LF----GGI--------VGESESRMRQMIR 312 (489)
T ss_pred CCceEEEECCCCCcHHHHHHHHHH--HhCCCE---EEEEhH--H------hc----ccc--------cChHHHHHHHHHH
Confidence 347789999999999999999999 333222 112221 1 00 000 0111122222222
Q ss_pred HHcCCCcEEEEEeCcCcc--------Cchhhhhhc-ccc---CCCCCCcEEEEEcCCCccccccc----CCcceeeecCC
Q 001843 352 QALDDSTFLIVMENAEHQ--------KSQVWDSFL-GKL---CSFTQCGKIIITTSSTEDFVEPL----GAAFSTLHVPG 415 (1007)
Q Consensus 352 ~~L~~kr~LlVlDdv~~~--------~~~~~~~l~-~l~---~~~~~gs~IliTTR~~~~va~~~----~~~~~~~~l~~ 415 (1007)
..-...+++|++|+++.. +...-..+. .+. +....+--||.||.+...+-..+ .-+ ..+.++.
T Consensus 313 ~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~vIaTTN~~~~Ld~allR~GRFD-~~i~v~l 391 (489)
T CHL00195 313 IAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFVVATANNIDLLPLEILRKGRFD-EIFFLDL 391 (489)
T ss_pred HHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEEEEecCChhhCCHHHhCCCcCC-eEEEeCC
Confidence 222357899999999721 000111111 111 11133334555776554222221 122 6788998
Q ss_pred CCHHHHHHHHHhhhcc
Q 001843 416 LGKNESWELFLKKARI 431 (1007)
Q Consensus 416 L~~~ea~~Lf~~~a~~ 431 (1007)
.+.++-.++|..+...
T Consensus 392 P~~~eR~~Il~~~l~~ 407 (489)
T CHL00195 392 PSLEEREKIFKIHLQK 407 (489)
T ss_pred cCHHHHHHHHHHHHhh
Confidence 9999999999887654
No 247
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.74 E-value=0.11 Score=61.18 Aligned_cols=73 Identities=22% Similarity=0.234 Sum_probs=46.4
Q ss_pred EEEEEEcCCCChHHHHHHHHHhhhhcccCCCceEEEEecCCCCCCHHHHHHHHHHHHhhhhhhhccccCHHHHHHHHHHH
Q 001843 274 QVIALIGKAGSGKTTLARIVYNRVYVKRHFTKRAWVHIPIMSMVEDRDVLADILKQIDESLLKVEATLSAEELMWRITQA 353 (1007)
Q Consensus 274 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~l~~il~~l~~~~~~~~~~~~~~~l~~~l~~~ 353 (1007)
.-|-|.|..|+|||+||+++++... +.+.-.+.+|+++.........++ ..+...+.+.
T Consensus 432 ~~Ill~G~~GsGKT~L~kal~~~~~-k~~~~hv~~v~Cs~l~~~~~e~iQ--------------------k~l~~vfse~ 490 (952)
T KOG0735|consen 432 GNILLNGPKGSGKTNLVKALFDYYS-KDLIAHVEIVSCSTLDGSSLEKIQ--------------------KFLNNVFSEA 490 (952)
T ss_pred ccEEEeCCCCCCHhHHHHHHHHHhc-cccceEEEEEechhccchhHHHHH--------------------HHHHHHHHHH
Confidence 5788999999999999999999433 333444566666511111111111 1122334556
Q ss_pred cCCCcEEEEEeCcC
Q 001843 354 LDDSTFLIVMENAE 367 (1007)
Q Consensus 354 L~~kr~LlVlDdv~ 367 (1007)
+...+-+|||||++
T Consensus 491 ~~~~PSiIvLDdld 504 (952)
T KOG0735|consen 491 LWYAPSIIVLDDLD 504 (952)
T ss_pred HhhCCcEEEEcchh
Confidence 67789999999996
No 248
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=95.73 E-value=0.34 Score=54.73 Aligned_cols=199 Identities=15% Similarity=0.223 Sum_probs=108.3
Q ss_pred cEEEEEeCcCcc---Cchhhhhhc---cccCCCCCCcEEEEEcCCCcccccc----cCCc-ceeeecCCCCHHHHHHHHH
Q 001843 358 TFLIVMENAEHQ---KSQVWDSFL---GKLCSFTQCGKIIITTSSTEDFVEP----LGAA-FSTLHVPGLGKNESWELFL 426 (1007)
Q Consensus 358 r~LlVlDdv~~~---~~~~~~~l~---~l~~~~~~gs~IliTTR~~~~va~~----~~~~-~~~~~l~~L~~~ea~~Lf~ 426 (1007)
|=+||+||.-+. +...|+.+. +..-. .+--+||++|-+.. .... +... .+.+.|.-.+++.|..+..
T Consensus 149 ~PVVVIdnF~~k~~~~~~iy~~laeWAa~Lv~-~nIAHVIFlT~dv~-~~k~LskaLPn~vf~tI~L~Das~~~Ak~yV~ 226 (431)
T PF10443_consen 149 RPVVVIDNFLHKAEENDFIYDKLAEWAASLVQ-NNIAHVIFLTDDVS-YSKPLSKALPNRVFKTISLSDASPESAKQYVL 226 (431)
T ss_pred CCEEEEcchhccCcccchHHHHHHHHHHHHHh-cCccEEEEECCCCc-hhhhHHHhCCCCceeEEeecCCCHHHHHHHHH
Confidence 558999998531 233344443 11222 34457888887765 4432 2221 1788999999999999998
Q ss_pred hhhcccccc--------cc-CC-----ChHHHHHHHHHHHHcCCCchHHHHHHHHhcCCCCChHHHHHHHHHcccchhhh
Q 001843 427 KKARIAEDV--------LQ-SR-----SSELIKLKKQILNICDGLPLRVVLLAGLLSTKQPSYEEWSKVIERANGDNLVA 492 (1007)
Q Consensus 427 ~~a~~~~~~--------~~-~~-----~~~~~~~~~~I~~~c~GlPLai~~~g~~L~~~~~~~~~w~~~l~~l~i~~~l~ 492 (1007)
.+....... .. .. ...........++.+||=-.-+..+++.++.......-.+.+..+- ...+.+
T Consensus 227 ~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltDLe~lvrRiksGe~p~~Av~~iI~qs-a~eI~k 305 (431)
T PF10443_consen 227 SQLDEDTEDSSDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTDLEFLVRRIKSGESPEEAVEEIISQS-ASEIRK 305 (431)
T ss_pred HHhcccccccccccccccccccccccccccchHHHHHHHHHcCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHH-HHHHHH
Confidence 887653210 00 00 0234455667888999999999999999998765333344444332 122222
Q ss_pred hhhc-------CCccCchhhhhhhccCCCCcccchhHHHHHHHhcccCCCCCCccCCHHHHHHHHHHHHHhccceEEEee
Q 001843 493 LCYQ-------DLPAQVKPCILYMGLFPREYEIPVRRLIHLWCAEGFAPPDLDLIASEEDLAEMYLEELVTRHMIQVIRW 565 (1007)
Q Consensus 493 ~sy~-------~L~~~~k~cfl~la~fp~~~~i~~~~Li~~Wiaeg~i~~~~~~~~~~e~~~~~~l~~Lv~rsll~~~~~ 565 (1007)
..+. .++-.-.|...-+-.+-+...++...++.- ..+ .. .++..+..|.+..||.....
T Consensus 306 ~fl~~~~~~~~~~~Wt~~QaW~LIk~Ls~~~~v~Y~~ll~~----~lF----k~------~~E~~L~aLe~aeLItv~~~ 371 (431)
T PF10443_consen 306 MFLLDDSDDAKSLKWTREQAWYLIKLLSKNDEVPYNELLLS----PLF----KG------NDETALRALEQAELITVTTD 371 (431)
T ss_pred HHhcCCCCcccCCCCCHHHHHHHHHHhccCCcCcHHHHHcc----ccc----CC------CChHHHHHHHHCCcEEEEec
Confidence 2221 111112222222333334444444443321 011 01 13447889999999988764
Q ss_pred cCCCCcceEE
Q 001843 566 RLDGSPKTCC 575 (1007)
Q Consensus 566 ~~~g~~~~~~ 575 (1007)
+|+...++
T Consensus 372 --~G~p~~I~ 379 (431)
T PF10443_consen 372 --NGRPSTIR 379 (431)
T ss_pred --CCcCCeeE
Confidence 56555544
No 249
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.72 E-value=0.039 Score=61.68 Aligned_cols=87 Identities=23% Similarity=0.232 Sum_probs=48.6
Q ss_pred cEEEEEEcCCCChHHHHHHHHHhhhhcccCCCceEEEEecCCCCCC--HHHHHHHHHHHHhhhhhhhccccCHHHHHHHH
Q 001843 273 TQVIALIGKAGSGKTTLARIVYNRVYVKRHFTKRAWVHIPIMSMVE--DRDVLADILKQIDESLLKVEATLSAEELMWRI 350 (1007)
Q Consensus 273 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~--~~~~l~~il~~l~~~~~~~~~~~~~~~l~~~l 350 (1007)
+++|+++|.+|+||||++..++.. ....-..+..++.. .+. ..+-++.....++.+ .....+...+.+.+
T Consensus 241 ~~vI~LVGptGvGKTTTiaKLA~~--L~~~GkkVglI~aD---t~RiaAvEQLk~yae~lgip---v~v~~d~~~L~~aL 312 (436)
T PRK11889 241 VQTIALIGPTGVGKTTTLAKMAWQ--FHGKKKTVGFITTD---HSRIGTVQQLQDYVKTIGFE---VIAVRDEAAMTRAL 312 (436)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHH--HHHcCCcEEEEecC---CcchHHHHHHHHHhhhcCCc---EEecCCHHHHHHHH
Confidence 389999999999999999999873 33332345556553 232 222333333333322 11234555565555
Q ss_pred HHHcCC-CcEEEEEeCcC
Q 001843 351 TQALDD-STFLIVMENAE 367 (1007)
Q Consensus 351 ~~~L~~-kr~LlVlDdv~ 367 (1007)
...-.. +.=+|++|-.-
T Consensus 313 ~~lk~~~~~DvVLIDTaG 330 (436)
T PRK11889 313 TYFKEEARVDYILIDTAG 330 (436)
T ss_pred HHHHhccCCCEEEEeCcc
Confidence 443322 23377778764
No 250
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=95.64 E-value=0.041 Score=63.42 Aligned_cols=91 Identities=24% Similarity=0.251 Sum_probs=49.5
Q ss_pred CcEEEEEEcCCCChHHHHHHHHHhhhhcccCCCceEEEEecCCCCCCHHHHHHHHHHHHhhhhhhhccccCHHHHHHHHH
Q 001843 272 TTQVIALIGKAGSGKTTLARIVYNRVYVKRHFTKRAWVHIPIMSMVEDRDVLADILKQIDESLLKVEATLSAEELMWRIT 351 (1007)
Q Consensus 272 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~l~~il~~l~~~~~~~~~~~~~~~l~~~l~ 351 (1007)
.+.+|.++|.+|+||||.|..++. .....-..+.-|++... .....+.++.++.+++.+........+.........
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~--~L~~~g~kV~lV~~D~~-R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al 170 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLAR--YFKKKGLKVGLVAADTY-RPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGL 170 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHH--HHHHcCCeEEEecCCCC-CHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHH
Confidence 348999999999999999999998 34333224455554311 122344455556655443111111223333333333
Q ss_pred HHcCCCcEEEEEeCc
Q 001843 352 QALDDSTFLIVMENA 366 (1007)
Q Consensus 352 ~~L~~kr~LlVlDdv 366 (1007)
+.+.+. =+||+|..
T Consensus 171 ~~~~~~-DvVIIDTA 184 (437)
T PRK00771 171 EKFKKA-DVIIVDTA 184 (437)
T ss_pred HHhhcC-CEEEEECC
Confidence 333333 46777776
No 251
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=95.63 E-value=0.057 Score=56.72 Aligned_cols=37 Identities=24% Similarity=0.311 Sum_probs=29.6
Q ss_pred EEEEEEcCCCChHHHHHHHHHhhhhcccCCCceEEEEec
Q 001843 274 QVIALIGKAGSGKTTLARIVYNRVYVKRHFTKRAWVHIP 312 (1007)
Q Consensus 274 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s 312 (1007)
+++.|.|.+|+||||+|.+++.. ....-..++|++..
T Consensus 20 ~i~~i~G~~GsGKT~l~~~~a~~--~~~~g~~v~yi~~e 56 (218)
T cd01394 20 TVTQVYGPPGTGKTNIAIQLAVE--TAGQGKKVAYIDTE 56 (218)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH--HHhcCCeEEEEECC
Confidence 89999999999999999999873 33333467888765
No 252
>PRK14974 cell division protein FtsY; Provisional
Probab=95.61 E-value=0.058 Score=60.04 Aligned_cols=100 Identities=17% Similarity=0.247 Sum_probs=52.6
Q ss_pred cEEEEEEcCCCChHHHHHHHHHhhhhcccC-CCceEEEEecCCCCCC--HHHHHHHHHHHHhhhhhhhccccCHHHH-HH
Q 001843 273 TQVIALIGKAGSGKTTLARIVYNRVYVKRH-FTKRAWVHIPIMSMVE--DRDVLADILKQIDESLLKVEATLSAEEL-MW 348 (1007)
Q Consensus 273 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-F~~~~wv~~s~~~~~~--~~~~l~~il~~l~~~~~~~~~~~~~~~l-~~ 348 (1007)
+.+|.++|++|+||||++.+++. ..... + .++.++. ..+. ..+-++..+..++.+........+.... ..
T Consensus 140 ~~vi~~~G~~GvGKTTtiakLA~--~l~~~g~-~V~li~~---Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ 213 (336)
T PRK14974 140 PVVIVFVGVNGTGKTTTIAKLAY--YLKKNGF-SVVIAAG---DTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYD 213 (336)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHH--HHHHcCC-eEEEecC---CcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHH
Confidence 48999999999999999888887 33332 3 3444543 2332 2334455555555431111122233332 22
Q ss_pred HHHHHcCCCcEEEEEeCcCcc--Cchhhhhhc
Q 001843 349 RITQALDDSTFLIVMENAEHQ--KSQVWDSFL 378 (1007)
Q Consensus 349 ~l~~~L~~kr~LlVlDdv~~~--~~~~~~~l~ 378 (1007)
.+...-....=+|++|-.-.. +...++++.
T Consensus 214 ai~~~~~~~~DvVLIDTaGr~~~~~~lm~eL~ 245 (336)
T PRK14974 214 AIEHAKARGIDVVLIDTAGRMHTDANLMDELK 245 (336)
T ss_pred HHHHHHhCCCCEEEEECCCccCCcHHHHHHHH
Confidence 233222222238999987532 334445554
No 253
>PRK10867 signal recognition particle protein; Provisional
Probab=95.61 E-value=0.04 Score=63.42 Aligned_cols=38 Identities=34% Similarity=0.457 Sum_probs=27.4
Q ss_pred CcEEEEEEcCCCChHHHHHHHHHhhhhcccC-CCceEEEEe
Q 001843 272 TTQVIALIGKAGSGKTTLARIVYNRVYVKRH-FTKRAWVHI 311 (1007)
Q Consensus 272 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-F~~~~wv~~ 311 (1007)
.+.+|.++|.+|+||||.|.+++. ..... -..++.|++
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~--~l~~~~G~kV~lV~~ 137 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAK--YLKKKKKKKVLLVAA 137 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHH--HHHHhcCCcEEEEEc
Confidence 348999999999999998888887 33333 233455554
No 254
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=95.56 E-value=0.038 Score=63.19 Aligned_cols=37 Identities=35% Similarity=0.407 Sum_probs=27.6
Q ss_pred cEEEEEEcCCCChHHHHHHHHHhhhhcccCCCceEEEEe
Q 001843 273 TQVIALIGKAGSGKTTLARIVYNRVYVKRHFTKRAWVHI 311 (1007)
Q Consensus 273 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~ 311 (1007)
+.+|.++|.+|+||||+|.+++. ..+.+-..++.|++
T Consensus 100 ~~vi~lvG~~GvGKTTtaaKLA~--~l~~~G~kV~lV~~ 136 (429)
T TIGR01425 100 QNVIMFVGLQGSGKTTTCTKLAY--YYQRKGFKPCLVCA 136 (429)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH--HHHHCCCCEEEEcC
Confidence 48999999999999999999887 33333224555554
No 255
>PRK05541 adenylylsulfate kinase; Provisional
Probab=95.54 E-value=0.034 Score=56.25 Aligned_cols=35 Identities=37% Similarity=0.618 Sum_probs=29.3
Q ss_pred EEEEEEcCCCChHHHHHHHHHhhhhcccCCCceEEEE
Q 001843 274 QVIALIGKAGSGKTTLARIVYNRVYVKRHFTKRAWVH 310 (1007)
Q Consensus 274 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~ 310 (1007)
.+|.+.|+.|.||||+|+.+++ .....+...+++.
T Consensus 8 ~~I~i~G~~GsGKst~a~~l~~--~l~~~~~~~~~~~ 42 (176)
T PRK05541 8 YVIWITGLAGSGKTTIAKALYE--RLKLKYSNVIYLD 42 (176)
T ss_pred CEEEEEcCCCCCHHHHHHHHHH--HHHHcCCcEEEEe
Confidence 7999999999999999999999 5666666666653
No 256
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=95.46 E-value=0.038 Score=55.67 Aligned_cols=90 Identities=21% Similarity=0.220 Sum_probs=44.9
Q ss_pred EEEEEcCCCChHHHHHHHHHhhhhcccCCCceEEEEecCCCCCCHHHHHHHHHHHHhhhhhhhccccCHHHHH-HHHHHH
Q 001843 275 VIALIGKAGSGKTTLARIVYNRVYVKRHFTKRAWVHIPIMSMVEDRDVLADILKQIDESLLKVEATLSAEELM-WRITQA 353 (1007)
Q Consensus 275 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~l~~il~~l~~~~~~~~~~~~~~~l~-~~l~~~ 353 (1007)
++.++|++|.||||++..++. .....-..++.++... ......+.+...+...+.+........+...+. +.+...
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~--~~~~~g~~v~~i~~D~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLAL--YLKKKGKKVLLVAADT-YRPAAIEQLRVLGEQVGVPVFEEGEGKDPVSIAKRAIEHA 78 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHH--HHHHCCCcEEEEEcCC-CChHHHHHHHHhcccCCeEEEecCCCCCHHHHHHHHHHHH
Confidence 678999999999999999988 3433322344444330 111223333333443332211111223444333 333443
Q ss_pred cCCCcEEEEEeCcC
Q 001843 354 LDDSTFLIVMENAE 367 (1007)
Q Consensus 354 L~~kr~LlVlDdv~ 367 (1007)
.....-++|+|..-
T Consensus 79 ~~~~~d~viiDt~g 92 (173)
T cd03115 79 REENFDVVIVDTAG 92 (173)
T ss_pred HhCCCCEEEEECcc
Confidence 44444366677654
No 257
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=95.38 E-value=0.0016 Score=77.41 Aligned_cols=38 Identities=26% Similarity=0.190 Sum_probs=23.8
Q ss_pred CCCCcccEEEecCCC-CCCcCCCccccCCCcCcEEeccc
Q 001843 666 RRLGMLKVLDLEGVY-KPMLTNNNALGRLPFLEYLGLRS 703 (1007)
Q Consensus 666 ~~l~~Lr~L~Ls~~~-l~~~~lp~~i~~L~~Lr~L~L~~ 703 (1007)
..++.|+.|.+.++. +....+-.....+++|+.|++++
T Consensus 185 ~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 223 (482)
T KOG1947|consen 185 SSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSG 223 (482)
T ss_pred hhCchhhHhhhcccccCChhhHHHHHhhCchhheecccC
Confidence 557788888888775 33111223455677777777765
No 258
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=95.33 E-value=0.0094 Score=57.69 Aligned_cols=85 Identities=21% Similarity=0.342 Sum_probs=46.3
Q ss_pred EEEEcCCCChHHHHHHHHHhhhhcccCCCceEEEEecCCCCCCHHHHHHHHHHHHhhhhhhhccccCHHHHHHHHHHHcC
Q 001843 276 IALIGKAGSGKTTLARIVYNRVYVKRHFTKRAWVHIPIMSMVEDRDVLADILKQIDESLLKVEATLSAEELMWRITQALD 355 (1007)
Q Consensus 276 i~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~l~~il~~l~~~~~~~~~~~~~~~l~~~l~~~L~ 355 (1007)
|.++|.+|+|||+||+.++. ..... ..-+.++ ...+..+++...--. ... .......+...+
T Consensus 2 vlL~G~~G~GKt~l~~~la~--~~~~~---~~~i~~~--~~~~~~dl~g~~~~~-~~~-----~~~~~~~l~~a~----- 63 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAA--LLGRP---VIRINCS--SDTTEEDLIGSYDPS-NGQ-----FEFKDGPLVRAM----- 63 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHH--HHTCE---EEEEE-T--TTSTHHHHHCEEET--TTT-----TCEEE-CCCTTH-----
T ss_pred EEEECCCCCCHHHHHHHHHH--Hhhcc---eEEEEec--cccccccceeeeeec-ccc-----cccccccccccc-----
Confidence 57999999999999999999 34221 2234555 666655544322211 000 000000000001
Q ss_pred CCcEEEEEeCcCccCchhhhhhc
Q 001843 356 DSTFLIVMENAEHQKSQVWDSFL 378 (1007)
Q Consensus 356 ~kr~LlVlDdv~~~~~~~~~~l~ 378 (1007)
.+..++|||++...+.+.+..+.
T Consensus 64 ~~~~il~lDEin~a~~~v~~~L~ 86 (139)
T PF07728_consen 64 RKGGILVLDEINRAPPEVLESLL 86 (139)
T ss_dssp HEEEEEEESSCGG--HHHHHTTH
T ss_pred cceeEEEECCcccCCHHHHHHHH
Confidence 17899999999866666666665
No 259
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=95.33 E-value=0.016 Score=64.23 Aligned_cols=23 Identities=30% Similarity=0.602 Sum_probs=21.9
Q ss_pred EEEEEEcCCCChHHHHHHHHHhh
Q 001843 274 QVIALIGKAGSGKTTLARIVYNR 296 (1007)
Q Consensus 274 ~vi~I~G~gGiGKTtLa~~v~~~ 296 (1007)
+++.++|++|.||||||+.+++.
T Consensus 79 ~il~L~GPPGsGKStla~~La~~ 101 (361)
T smart00763 79 QILYLLGPVGGGKSSLVECLKRG 101 (361)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 89999999999999999999984
No 260
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=95.31 E-value=0.055 Score=62.21 Aligned_cols=91 Identities=21% Similarity=0.271 Sum_probs=47.2
Q ss_pred CcEEEEEEcCCCChHHHHHHHHHhhhhcc-cCCCceEEEEecCCCCCC--HHHHHHHHHHHHhhhhhhhccccCHHHHHH
Q 001843 272 TTQVIALIGKAGSGKTTLARIVYNRVYVK-RHFTKRAWVHIPIMSMVE--DRDVLADILKQIDESLLKVEATLSAEELMW 348 (1007)
Q Consensus 272 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~~F~~~~wv~~s~~~~~~--~~~~l~~il~~l~~~~~~~~~~~~~~~l~~ 348 (1007)
++.++.++|.+|+||||.|..++.. .. +.-..++-|++. .+. ..+-+.....+++.+........++..+..
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~~--l~~~~g~kV~lV~~D---~~R~~a~~QL~~~a~~~gvp~~~~~~~~~P~~i~~ 172 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAYY--LKKKQGKKVLLVACD---LYRPAAIEQLKVLGQQVGVPVFALGKGQSPVEIAR 172 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHH--HHHhCCCeEEEEecc---ccchHHHHHHHHHHHhcCCceEecCCCCCHHHHHH
Confidence 3489999999999999999998873 32 121234445543 222 233333444444332111112233444433
Q ss_pred HHHHHcCCCcE-EEEEeCcC
Q 001843 349 RITQALDDSTF-LIVMENAE 367 (1007)
Q Consensus 349 ~l~~~L~~kr~-LlVlDdv~ 367 (1007)
...+....+.| +||+|-.-
T Consensus 173 ~al~~~~~~~~DvVIIDTaG 192 (428)
T TIGR00959 173 RALEYAKENGFDVVIVDTAG 192 (428)
T ss_pred HHHHHHHhcCCCEEEEeCCC
Confidence 33333333444 67777653
No 261
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=95.27 E-value=0.1 Score=55.45 Aligned_cols=87 Identities=15% Similarity=0.219 Sum_probs=54.4
Q ss_pred EEEEEEcCCCChHHHHHHHHHhhhhcccCCCceEEEEecCCCCCCHHHHHHHHHHHHhhhhhhh----------------
Q 001843 274 QVIALIGKAGSGKTTLARIVYNRVYVKRHFTKRAWVHIPIMSMVEDRDVLADILKQIDESLLKV---------------- 337 (1007)
Q Consensus 274 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~l~~il~~l~~~~~~~---------------- 337 (1007)
+++.|+|.+|+|||++|.++... .++ +=..++|++.. +. ..++.+.+ .+++-...+.
T Consensus 26 ~~~~i~G~~GsGKt~l~~~~~~~-~~~-~g~~~~y~~~e--~~--~~~~~~~~-~~~g~~~~~~~~~g~l~i~~~~~~~~ 98 (234)
T PRK06067 26 SLILIEGDHGTGKSVLSQQFVYG-ALK-QGKKVYVITTE--NT--SKSYLKQM-ESVKIDISDFFLWGYLRIFPLNTEGF 98 (234)
T ss_pred cEEEEECCCCCChHHHHHHHHHH-HHh-CCCEEEEEEcC--CC--HHHHHHHH-HHCCCChhHHHhCCCceEEecccccc
Confidence 89999999999999999998653 222 34568888865 43 34444443 3333221110
Q ss_pred -ccccCHHHHHHHHHHHcCC-CcEEEEEeCcC
Q 001843 338 -EATLSAEELMWRITQALDD-STFLIVMENAE 367 (1007)
Q Consensus 338 -~~~~~~~~l~~~l~~~L~~-kr~LlVlDdv~ 367 (1007)
....+.+.+...+.+.+.. +.-++|+|.+.
T Consensus 99 ~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t 130 (234)
T PRK06067 99 EWNSTLANKLLELIIEFIKSKREDVIIIDSLT 130 (234)
T ss_pred ccCcchHHHHHHHHHHHHHhcCCCEEEEecHH
Confidence 0112345666777777754 55689999875
No 262
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=95.21 E-value=0.038 Score=56.90 Aligned_cols=106 Identities=16% Similarity=0.195 Sum_probs=53.3
Q ss_pred EEEEEEcCCCChHHHHHHHHHhhhhcccCCCceEEEEecCCCCCCHHHHHHHHHHHHhhhhhhhccccCHHHHHHHHHHH
Q 001843 274 QVIALIGKAGSGKTTLARIVYNRVYVKRHFTKRAWVHIPIMSMVEDRDVLADILKQIDESLLKVEATLSAEELMWRITQA 353 (1007)
Q Consensus 274 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~l~~il~~l~~~~~~~~~~~~~~~l~~~l~~~ 353 (1007)
+++.|.|.+|.||||+++.+.. .....=..++++.-+ ......+.+..+.. ..+.+.........
T Consensus 19 ~~~~l~G~aGtGKT~~l~~~~~--~~~~~g~~v~~~apT-------~~Aa~~L~~~~~~~------a~Ti~~~l~~~~~~ 83 (196)
T PF13604_consen 19 RVSVLQGPAGTGKTTLLKALAE--ALEAAGKRVIGLAPT-------NKAAKELREKTGIE------AQTIHSFLYRIPNG 83 (196)
T ss_dssp SEEEEEESTTSTHHHHHHHHHH--HHHHTT--EEEEESS-------HHHHHHHHHHHTS-------EEEHHHHTTEECCE
T ss_pred eEEEEEECCCCCHHHHHHHHHH--HHHhCCCeEEEECCc-------HHHHHHHHHhhCcc------hhhHHHHHhcCCcc
Confidence 7889999999999999999887 343332334444332 12222233332211 11111111110000
Q ss_pred c------CCCcEEEEEeCcCccCchhhhhhc-cccCCCCCCcEEEEEcCCC
Q 001843 354 L------DDSTFLIVMENAEHQKSQVWDSFL-GKLCSFTQCGKIIITTSST 397 (1007)
Q Consensus 354 L------~~kr~LlVlDdv~~~~~~~~~~l~-~l~~~~~~gs~IliTTR~~ 397 (1007)
- ..++-+||+|++.-.+...+..+. .... .|+|+|+.=-..
T Consensus 84 ~~~~~~~~~~~~vliVDEasmv~~~~~~~ll~~~~~---~~~klilvGD~~ 131 (196)
T PF13604_consen 84 DDEGRPELPKKDVLIVDEASMVDSRQLARLLRLAKK---SGAKLILVGDPN 131 (196)
T ss_dssp ECCSSCC-TSTSEEEESSGGG-BHHHHHHHHHHS-T----T-EEEEEE-TT
T ss_pred cccccccCCcccEEEEecccccCHHHHHHHHHHHHh---cCCEEEEECCcc
Confidence 0 133459999999866666777776 4433 367777654433
No 263
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.18 E-value=0.047 Score=58.25 Aligned_cols=79 Identities=16% Similarity=0.419 Sum_probs=51.1
Q ss_pred EEEEEEcCCCChHHHHHHHHHhhhhcc--cCCCceEEEEecCCCCCCHHHHHHHHHHHHhhhhhhhccccCHHHHHHHHH
Q 001843 274 QVIALIGKAGSGKTTLARIVYNRVYVK--RHFTKRAWVHIPIMSMVEDRDVLADILKQIDESLLKVEATLSAEELMWRIT 351 (1007)
Q Consensus 274 ~vi~I~G~gGiGKTtLa~~v~~~~~~~--~~F~~~~wv~~s~~~~~~~~~~l~~il~~l~~~~~~~~~~~~~~~l~~~l~ 351 (1007)
|+|.++|++|.|||+|.++.++.-.++ ..|....-+.+. ...++.+...+ ...-...+.+++.
T Consensus 178 RliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEin------shsLFSKWFsE---------SgKlV~kmF~kI~ 242 (423)
T KOG0744|consen 178 RLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEIN------SHSLFSKWFSE---------SGKLVAKMFQKIQ 242 (423)
T ss_pred eEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEe------hhHHHHHHHhh---------hhhHHHHHHHHHH
Confidence 899999999999999999999965443 345444445443 22233332222 2223566677777
Q ss_pred HHcCCCcE--EEEEeCcC
Q 001843 352 QALDDSTF--LIVMENAE 367 (1007)
Q Consensus 352 ~~L~~kr~--LlVlDdv~ 367 (1007)
+.+.++.. ++.+|.|.
T Consensus 243 ELv~d~~~lVfvLIDEVE 260 (423)
T KOG0744|consen 243 ELVEDRGNLVFVLIDEVE 260 (423)
T ss_pred HHHhCCCcEEEEEeHHHH
Confidence 77777654 45578885
No 264
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=95.18 E-value=0.32 Score=54.56 Aligned_cols=27 Identities=33% Similarity=0.516 Sum_probs=23.6
Q ss_pred EEEEEEcCCCChHHHHHHHHHhhhhcccC
Q 001843 274 QVIALIGKAGSGKTTLARIVYNRVYVKRH 302 (1007)
Q Consensus 274 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~ 302 (1007)
.+|+|.|.=|+||||+.+.+.+ ..+..
T Consensus 21 ~~IgL~G~WGsGKSs~l~~l~~--~L~~~ 47 (325)
T PF07693_consen 21 FVIGLYGEWGSGKSSFLNMLKE--ELKED 47 (325)
T ss_pred eEEEEECCCCCCHHHHHHHHHH--HHhcc
Confidence 8999999999999999999988 44444
No 265
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=95.16 E-value=0.067 Score=59.69 Aligned_cols=57 Identities=18% Similarity=0.220 Sum_probs=41.3
Q ss_pred EEEEEEcCCCChHHHHHHHHHhhhhccc----CCCceEEEEecCCCCCCHHHHHHHHHHHHhhh
Q 001843 274 QVIALIGKAGSGKTTLARIVYNRVYVKR----HFTKRAWVHIPIMSMVEDRDVLADILKQIDES 333 (1007)
Q Consensus 274 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~F~~~~wv~~s~~~~~~~~~~l~~il~~l~~~ 333 (1007)
++.-|+|.+|+|||+|+.+++-...... .-..++||+.. ..|+..++.+ +++.++.+
T Consensus 127 ~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE--~tF~peRl~~-ia~~~g~d 187 (344)
T PLN03187 127 CITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTE--GTFRPDRIVP-IAERFGMD 187 (344)
T ss_pred eEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcC--CCCCHHHHHH-HHHHcCCC
Confidence 8999999999999999999875333321 12468999987 8888777544 55655443
No 266
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=95.15 E-value=0.5 Score=51.84 Aligned_cols=157 Identities=8% Similarity=0.087 Sum_probs=89.9
Q ss_pred EEEEEEcCCCChHHHHHHHHHhhh---h---cccC-CC-ceEEEEecCCCCCCHHHHHHHHHHHHhhhhhhhccccCHHH
Q 001843 274 QVIALIGKAGSGKTTLARIVYNRV---Y---VKRH-FT-KRAWVHIPIMSMVEDRDVLADILKQIDESLLKVEATLSAEE 345 (1007)
Q Consensus 274 ~vi~I~G~gGiGKTtLa~~v~~~~---~---~~~~-F~-~~~wv~~s~~~~~~~~~~l~~il~~l~~~~~~~~~~~~~~~ 345 (1007)
.+.-++|..|.||+++|+.+.+.- . +... .+ ...++... .......+ .+++.+.+...
T Consensus 19 haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~-g~~i~vd~-Ir~l~~~~~~~------------ 84 (299)
T PRK07132 19 HSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIF-DKDLSKSE-FLSAINKLYFS------------ 84 (299)
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccC-CCcCCHHH-HHHHHHHhccC------------
Confidence 678899999999999999998731 0 0111 11 23333221 01111111 11222222111
Q ss_pred HHHHHHHHcC-CCcEEEEEeCcCccCchhhhhhc-cccCCCCCCcEEEEEcCCCcccccccCCcceeeecCCCCHHHHHH
Q 001843 346 LMWRITQALD-DSTFLIVMENAEHQKSQVWDSFL-GKLCSFTQCGKIIITTSSTEDFVEPLGAAFSTLHVPGLGKNESWE 423 (1007)
Q Consensus 346 l~~~l~~~L~-~kr~LlVlDdv~~~~~~~~~~l~-~l~~~~~~gs~IliTTR~~~~va~~~~~~~~~~~l~~L~~~ea~~ 423 (1007)
-.. +++=++|+|+++..+....+.+. .+-.. ...+.+|++|.+...+.....+.+..+++.++++++..+
T Consensus 85 -------~~~~~~~KvvII~~~e~m~~~a~NaLLK~LEEP-p~~t~~il~~~~~~kll~TI~SRc~~~~f~~l~~~~l~~ 156 (299)
T PRK07132 85 -------SFVQSQKKILIIKNIEKTSNSLLNALLKTIEEP-PKDTYFLLTTKNINKVLPTIVSRCQVFNVKEPDQQKILA 156 (299)
T ss_pred -------CcccCCceEEEEecccccCHHHHHHHHHHhhCC-CCCeEEEEEeCChHhChHHHHhCeEEEECCCCCHHHHHH
Confidence 011 46778899998865666666676 44443 556677765555443666555555999999999999987
Q ss_pred HHHhhhccccccccCCChHHHHHHHHHHHHcCCCchHHHHH
Q 001843 424 LFLKKARIAEDVLQSRSSELIKLKKQILNICDGLPLRVVLL 464 (1007)
Q Consensus 424 Lf~~~a~~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~ 464 (1007)
.+.... . + ++.+..++...+|.=-|+..+
T Consensus 157 ~l~~~~----~-----~---~~~a~~~a~~~~~~~~a~~~~ 185 (299)
T PRK07132 157 KLLSKN----K-----E---KEYNWFYAYIFSNFEQAEKYI 185 (299)
T ss_pred HHHHcC----C-----C---hhHHHHHHHHcCCHHHHHHHH
Confidence 776541 1 1 234556666677633455543
No 267
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=95.14 E-value=0.075 Score=58.79 Aligned_cols=56 Identities=14% Similarity=0.203 Sum_probs=40.6
Q ss_pred EEEEEEcCCCChHHHHHHHHHhhhhcc----cCCCceEEEEecCCCCCCHHHHHHHHHHHHhh
Q 001843 274 QVIALIGKAGSGKTTLARIVYNRVYVK----RHFTKRAWVHIPIMSMVEDRDVLADILKQIDE 332 (1007)
Q Consensus 274 ~vi~I~G~gGiGKTtLa~~v~~~~~~~----~~F~~~~wv~~s~~~~~~~~~~l~~il~~l~~ 332 (1007)
+++-|+|.+|+|||+|+.+++-..... ..=..++||+.. ..++..++. +++++++.
T Consensus 97 ~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE--~~f~~eRi~-~~a~~~g~ 156 (313)
T TIGR02238 97 SITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTE--GTFRPDRIR-AIAERFGV 156 (313)
T ss_pred eEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcC--CCCCHHHHH-HHHHHcCC
Confidence 899999999999999999877533332 112468999987 777777654 45666554
No 268
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=95.13 E-value=0.098 Score=56.73 Aligned_cols=90 Identities=18% Similarity=0.193 Sum_probs=49.8
Q ss_pred cEEEEEEcCCCChHHHHHHHHHhhhhcccCCCceEEEEecCCCCCCH--HHHHHHHHHHHhhhhhhhccccCHHH-HHHH
Q 001843 273 TQVIALIGKAGSGKTTLARIVYNRVYVKRHFTKRAWVHIPIMSMVED--RDVLADILKQIDESLLKVEATLSAEE-LMWR 349 (1007)
Q Consensus 273 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~--~~~l~~il~~l~~~~~~~~~~~~~~~-l~~~ 349 (1007)
++++.++|.+|+||||++..++. .....-..+.++++. .+.. .+-++..+...+..........+... ....
T Consensus 72 ~~vi~l~G~~G~GKTTt~akLA~--~l~~~g~~V~li~~D---~~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~ 146 (272)
T TIGR00064 72 PNVILFVGVNGVGKTTTIAKLAN--KLKKQGKSVLLAAGD---TFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDA 146 (272)
T ss_pred CeEEEEECCCCCcHHHHHHHHHH--HHHhcCCEEEEEeCC---CCCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHH
Confidence 48999999999999999999987 344433456667654 2332 23334444444432111111122222 2333
Q ss_pred HHHHcCCCcEEEEEeCcC
Q 001843 350 ITQALDDSTFLIVMENAE 367 (1007)
Q Consensus 350 l~~~L~~kr~LlVlDdv~ 367 (1007)
+........=++|+|-.-
T Consensus 147 l~~~~~~~~D~ViIDT~G 164 (272)
T TIGR00064 147 IQKAKARNIDVVLIDTAG 164 (272)
T ss_pred HHHHHHCCCCEEEEeCCC
Confidence 444333444588888764
No 269
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=95.13 E-value=0.032 Score=57.65 Aligned_cols=107 Identities=16% Similarity=0.189 Sum_probs=59.8
Q ss_pred EEEEEEcCCCChHHHHHHHHHhhhhcccCCCceEEEEecCCCCCCHH-HHHHHHHHHHhhhhhhhccccCHHHHHHHHHH
Q 001843 274 QVIALIGKAGSGKTTLARIVYNRVYVKRHFTKRAWVHIPIMSMVEDR-DVLADILKQIDESLLKVEATLSAEELMWRITQ 352 (1007)
Q Consensus 274 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~-~~l~~il~~l~~~~~~~~~~~~~~~l~~~l~~ 352 (1007)
.+|.|+|..|.||||++..+.. .+.......+++--. +.... .-...+..+- +...+.....+.++.
T Consensus 2 GlilI~GptGSGKTTll~~ll~--~~~~~~~~~i~t~e~---~~E~~~~~~~~~i~q~-------~vg~~~~~~~~~i~~ 69 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMID--YINKNKTHHILTIED---PIEFVHESKRSLINQR-------EVGLDTLSFENALKA 69 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHH--HhhhcCCcEEEEEcC---CccccccCccceeeec-------ccCCCccCHHHHHHH
Confidence 5799999999999999998887 444444444444221 11100 0000011000 011123345566778
Q ss_pred HcCCCcEEEEEeCcCccCchhhhhhc-cccCCCCCCcEEEEEcCCCc
Q 001843 353 ALDDSTFLIVMENAEHQKSQVWDSFL-GKLCSFTQCGKIIITTSSTE 398 (1007)
Q Consensus 353 ~L~~kr~LlVlDdv~~~~~~~~~~l~-~l~~~~~~gs~IliTTR~~~ 398 (1007)
.+...+=.|++|.+. +.+.+..+. .. ..|-.|+.|+-...
T Consensus 70 aLr~~pd~ii~gEir--d~e~~~~~l~~a----~~G~~v~~t~Ha~~ 110 (198)
T cd01131 70 ALRQDPDVILVGEMR--DLETIRLALTAA----ETGHLVMSTLHTNS 110 (198)
T ss_pred HhcCCcCEEEEcCCC--CHHHHHHHHHHH----HcCCEEEEEecCCc
Confidence 887778899999997 665555443 22 23445666665444
No 270
>PRK08233 hypothetical protein; Provisional
Probab=95.11 E-value=0.055 Score=54.94 Aligned_cols=22 Identities=32% Similarity=0.555 Sum_probs=21.2
Q ss_pred EEEEEEcCCCChHHHHHHHHHh
Q 001843 274 QVIALIGKAGSGKTTLARIVYN 295 (1007)
Q Consensus 274 ~vi~I~G~gGiGKTtLa~~v~~ 295 (1007)
.+|+|.|.+|+||||+|+.++.
T Consensus 4 ~iI~I~G~~GsGKtTla~~L~~ 25 (182)
T PRK08233 4 KIITIAAVSGGGKTTLTERLTH 25 (182)
T ss_pred eEEEEECCCCCCHHHHHHHHHh
Confidence 8999999999999999999987
No 271
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.11 E-value=0.0087 Score=37.46 Aligned_cols=17 Identities=47% Similarity=0.769 Sum_probs=7.1
Q ss_pred CcEEecccCCCcccCcc
Q 001843 696 LEYLGLRSTFIDSLPDS 712 (1007)
Q Consensus 696 Lr~L~L~~n~i~~LP~~ 712 (1007)
|++|+|++|.++.+|.+
T Consensus 2 L~~Ldls~n~l~~ip~~ 18 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSS 18 (22)
T ss_dssp ESEEEETSSEESEEGTT
T ss_pred ccEEECCCCcCEeCChh
Confidence 34444444444444433
No 272
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=95.10 E-value=0.13 Score=50.58 Aligned_cols=122 Identities=16% Similarity=0.088 Sum_probs=60.7
Q ss_pred EEEEEEcCCCChHHHHHHHHHhhhhcccCCCceEEEEecCC-CCCCHHHHHHHHHHHHhhhh----------hhhccccC
Q 001843 274 QVIALIGKAGSGKTTLARIVYNRVYVKRHFTKRAWVHIPIM-SMVEDRDVLADILKQIDESL----------LKVEATLS 342 (1007)
Q Consensus 274 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~-~~~~~~~~l~~il~~l~~~~----------~~~~~~~~ 342 (1007)
..|-|++-.|.||||+|...+-. .-.+=-.+.++-+-.. ....-...++.+ ..+.... ........
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~r--a~~~g~~v~~vQFlKg~~~~gE~~~l~~l-~~v~~~~~g~~~~~~~~~~~~~~~~ 79 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLALR--ALGHGYRVGVVQFLKGGWKYGELKALERL-PNIEIHRMGRGFFWTTENDEEDIAA 79 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHHH--HHHCCCeEEEEEEeCCCCccCHHHHHHhC-CCcEEEECCCCCccCCCChHHHHHH
Confidence 47788888899999999888773 3333223444332211 122333333332 0000000 00001111
Q ss_pred HHHHHHHHHHHcCCCcE-EEEEeCcCcc---CchhhhhhccccCCCCCCcEEEEEcCCCc
Q 001843 343 AEELMWRITQALDDSTF-LIVMENAEHQ---KSQVWDSFLGKLCSFTQCGKIIITTSSTE 398 (1007)
Q Consensus 343 ~~~l~~~l~~~L~~kr~-LlVlDdv~~~---~~~~~~~l~~l~~~~~~gs~IliTTR~~~ 398 (1007)
.....+..++.+....| |||||++-.. ..-..+.+..+..+-..+..||+|.|+..
T Consensus 80 a~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p 139 (159)
T cd00561 80 AAEGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAP 139 (159)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCC
Confidence 22334445555555555 9999998521 22223334422222144568999999865
No 273
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=95.09 E-value=0.092 Score=57.42 Aligned_cols=85 Identities=27% Similarity=0.313 Sum_probs=46.4
Q ss_pred EEEEEEcCCCChHHHHHHHHHhhhhcccCCCceEEEEecCCCCCC--HHHHHHHHHHHHhhhhhhhccccCHHHHHHHHH
Q 001843 274 QVIALIGKAGSGKTTLARIVYNRVYVKRHFTKRAWVHIPIMSMVE--DRDVLADILKQIDESLLKVEATLSAEELMWRIT 351 (1007)
Q Consensus 274 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~--~~~~l~~il~~l~~~~~~~~~~~~~~~l~~~l~ 351 (1007)
++++|+|.+|+||||++..++.....+..-..+..|+.. .+. ..+.+......++.+ .....+...+...+.
T Consensus 195 ~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D---~~r~~a~eql~~~~~~~~~p---~~~~~~~~~l~~~l~ 268 (282)
T TIGR03499 195 GVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTD---TYRIGAVEQLKTYAKILGVP---VKVARDPKELRKALD 268 (282)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECC---ccchhHHHHHHHHHHHhCCc---eeccCCHHHHHHHHH
Confidence 899999999999999999998742222111345666654 222 222333333333322 112234455554444
Q ss_pred HHcCCCcEEEEEeCc
Q 001843 352 QALDDSTFLIVMENA 366 (1007)
Q Consensus 352 ~~L~~kr~LlVlDdv 366 (1007)
. +.+ .=+|++|..
T Consensus 269 ~-~~~-~d~vliDt~ 281 (282)
T TIGR03499 269 R-LRD-KDLILIDTA 281 (282)
T ss_pred H-ccC-CCEEEEeCC
Confidence 3 333 347777753
No 274
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=95.05 E-value=0.26 Score=58.92 Aligned_cols=23 Identities=26% Similarity=0.497 Sum_probs=21.1
Q ss_pred EEEEEEcCCCChHHHHHHHHHhh
Q 001843 274 QVIALIGKAGSGKTTLARIVYNR 296 (1007)
Q Consensus 274 ~vi~I~G~gGiGKTtLa~~v~~~ 296 (1007)
.-|.|+|..|+|||++|+.+++.
T Consensus 211 ~pVlI~Ge~GtGK~~~A~~ih~~ 233 (509)
T PRK05022 211 LNVLILGETGVGKELVARAIHAA 233 (509)
T ss_pred CcEEEECCCCccHHHHHHHHHHh
Confidence 57889999999999999999983
No 275
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=95.04 E-value=0.13 Score=57.13 Aligned_cols=56 Identities=14% Similarity=0.177 Sum_probs=38.8
Q ss_pred EEEEEEcCCCChHHHHHHHHHhhhhccc----CCCceEEEEecCCCCCCHHHHHHHHHHHHhh
Q 001843 274 QVIALIGKAGSGKTTLARIVYNRVYVKR----HFTKRAWVHIPIMSMVEDRDVLADILKQIDE 332 (1007)
Q Consensus 274 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~F~~~~wv~~s~~~~~~~~~~l~~il~~l~~ 332 (1007)
.++.|+|.+|+|||||+.+++....... .-..++|++.. ..++... +.++++.++.
T Consensus 97 ~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE--~~f~~~R-l~~ia~~~~~ 156 (316)
T TIGR02239 97 SITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTE--GTFRPER-LLAIAERYGL 156 (316)
T ss_pred eEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECC--CCCCHHH-HHHHHHHcCC
Confidence 8999999999999999999876322211 12357999877 6666665 4445555443
No 276
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=95.04 E-value=0.093 Score=51.82 Aligned_cols=36 Identities=36% Similarity=0.430 Sum_probs=27.9
Q ss_pred EEEEEcCCCChHHHHHHHHHhhhhcccCCCceEEEEec
Q 001843 275 VIALIGKAGSGKTTLARIVYNRVYVKRHFTKRAWVHIP 312 (1007)
Q Consensus 275 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s 312 (1007)
++.|+|.+|+||||+++.++.. ....-..++|+...
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~--~~~~~~~v~~~~~e 36 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALN--IATKGGKVVYVDIE 36 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHH--HHhcCCEEEEEECC
Confidence 4689999999999999999883 33344567777765
No 277
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=95.02 E-value=0.15 Score=63.27 Aligned_cols=23 Identities=30% Similarity=0.641 Sum_probs=21.0
Q ss_pred EEEEEEcCCCChHHHHHHHHHhh
Q 001843 274 QVIALIGKAGSGKTTLARIVYNR 296 (1007)
Q Consensus 274 ~vi~I~G~gGiGKTtLa~~v~~~ 296 (1007)
.-|.|+|..|+|||++|+.+++.
T Consensus 400 ~pVLI~GE~GTGK~~lA~~ih~~ 422 (686)
T PRK15429 400 STVLILGETGTGKELIARAIHNL 422 (686)
T ss_pred CCEEEECCCCcCHHHHHHHHHHh
Confidence 57889999999999999999983
No 278
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=95.01 E-value=0.073 Score=62.80 Aligned_cols=73 Identities=19% Similarity=0.329 Sum_probs=48.8
Q ss_pred CCCcEEEEEEcCCCChHHHHHHHHHhhhhcccCCCceEEEEecCCCCCCHHHHHHHHHHHHhhhhhhhccccCHHHHHHH
Q 001843 270 TTTTQVIALIGKAGSGKTTLARIVYNRVYVKRHFTKRAWVHIPIMSMVEDRDVLADILKQIDESLLKVEATLSAEELMWR 349 (1007)
Q Consensus 270 ~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~l~~il~~l~~~~~~~~~~~~~~~l~~~ 349 (1007)
-+..+++.++|++|+||||||.-|+.+ ..| .++=|.+| ..-+...+-..|...+...
T Consensus 323 RP~kKilLL~GppGlGKTTLAHViAkq----aGY-sVvEINAS--DeRt~~~v~~kI~~avq~~---------------- 379 (877)
T KOG1969|consen 323 RPPKKILLLCGPPGLGKTTLAHVIAKQ----AGY-SVVEINAS--DERTAPMVKEKIENAVQNH---------------- 379 (877)
T ss_pred CCccceEEeecCCCCChhHHHHHHHHh----cCc-eEEEeccc--ccccHHHHHHHHHHHHhhc----------------
Confidence 344589999999999999999999983 223 35667777 5555444444444444332
Q ss_pred HHHHcC--CCcEEEEEeCcC
Q 001843 350 ITQALD--DSTFLIVMENAE 367 (1007)
Q Consensus 350 l~~~L~--~kr~LlVlDdv~ 367 (1007)
..+. .++.-||+|.++
T Consensus 380 --s~l~adsrP~CLViDEID 397 (877)
T KOG1969|consen 380 --SVLDADSRPVCLVIDEID 397 (877)
T ss_pred --cccccCCCcceEEEeccc
Confidence 1222 577789999997
No 279
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=95.00 E-value=0.26 Score=57.17 Aligned_cols=134 Identities=17% Similarity=0.213 Sum_probs=77.9
Q ss_pred CcEEEEEEcCCCChHHHHHHHHHhhhhcccCCCceEEEEecCCCCCCHHHHHHHHHHHHhhhhhhhccccCHHHHHHHHH
Q 001843 272 TTQVIALIGKAGSGKTTLARIVYNRVYVKRHFTKRAWVHIPIMSMVEDRDVLADILKQIDESLLKVEATLSAEELMWRIT 351 (1007)
Q Consensus 272 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~l~~il~~l~~~~~~~~~~~~~~~l~~~l~ 351 (1007)
.+.=|.+||++|.|||-||++|+| .-.-.| ++|. .+ + ++... ...+...+...++
T Consensus 544 ~PsGvLL~GPPGCGKTLlAKAVAN--Eag~NF-----isVK---GP---E----LlNkY--------VGESErAVR~vFq 598 (802)
T KOG0733|consen 544 APSGVLLCGPPGCGKTLLAKAVAN--EAGANF-----ISVK---GP---E----LLNKY--------VGESERAVRQVFQ 598 (802)
T ss_pred CCCceEEeCCCCccHHHHHHHHhh--hccCce-----Eeec---CH---H----HHHHH--------hhhHHHHHHHHHH
Confidence 346788999999999999999999 455555 4443 11 1 11111 1122333334444
Q ss_pred HHcCCCcEEEEEeCcCc-----cCchh------hhhhccccCCC--CCCcEEEEEcCCCccccccc--CC--cceeeecC
Q 001843 352 QALDDSTFLIVMENAEH-----QKSQV------WDSFLGKLCSF--TQCGKIIITTSSTEDFVEPL--GA--AFSTLHVP 414 (1007)
Q Consensus 352 ~~L~~kr~LlVlDdv~~-----~~~~~------~~~l~~l~~~~--~~gs~IliTTR~~~~va~~~--~~--~~~~~~l~ 414 (1007)
+.-..-++.|+||.++. .+... .+++..-.++. ..|--||-.|-.++ +.... .. -...+-+.
T Consensus 599 RAR~saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPD-iIDpAiLRPGRlDk~LyV~ 677 (802)
T KOG0733|consen 599 RARASAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPD-IIDPAILRPGRLDKLLYVG 677 (802)
T ss_pred HhhcCCCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCc-ccchhhcCCCccCceeeec
Confidence 44456899999999862 11222 23333111221 34555666666555 43321 11 11677788
Q ss_pred CCCHHHHHHHHHhhhcc
Q 001843 415 GLGKNESWELFLKKARI 431 (1007)
Q Consensus 415 ~L~~~ea~~Lf~~~a~~ 431 (1007)
.-+.+|-.++++..+..
T Consensus 678 lPn~~eR~~ILK~~tkn 694 (802)
T KOG0733|consen 678 LPNAEERVAILKTITKN 694 (802)
T ss_pred CCCHHHHHHHHHHHhcc
Confidence 88889999999888763
No 280
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=94.93 E-value=0.11 Score=52.68 Aligned_cols=122 Identities=11% Similarity=0.165 Sum_probs=63.4
Q ss_pred EEEEEEcCCCChHHHHHHHHHhhhhcccCCCceEEEEecCCCCCCHHHHHH------HHHHHHhhhhh--hhccccC-HH
Q 001843 274 QVIALIGKAGSGKTTLARIVYNRVYVKRHFTKRAWVHIPIMSMVEDRDVLA------DILKQIDESLL--KVEATLS-AE 344 (1007)
Q Consensus 274 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~l~------~il~~l~~~~~--~~~~~~~-~~ 344 (1007)
.+++|+|..|.|||||.+.++.. . ......+++.-......+...... ++++.++.... ......+ .+
T Consensus 26 ~~~~l~G~nGsGKStLl~~i~G~--~-~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS~G~ 102 (180)
T cd03214 26 EIVGILGPNGAGKSTLLKTLAGL--L-KPSSGEILLDGKDLASLSPKELARKIAYVPQALELLGLAHLADRPFNELSGGE 102 (180)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC--C-CCCCcEEEECCEECCcCCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCCHHH
Confidence 79999999999999999999982 2 334444544311001112222111 13444333200 0011122 22
Q ss_pred HHHHHHHHHcCCCcEEEEEeCcCc-cCchhhhhhc-cccCCCCC-CcEEEEEcCCCc
Q 001843 345 ELMWRITQALDDSTFLIVMENAEH-QKSQVWDSFL-GKLCSFTQ-CGKIIITTSSTE 398 (1007)
Q Consensus 345 ~l~~~l~~~L~~kr~LlVlDdv~~-~~~~~~~~l~-~l~~~~~~-gs~IliTTR~~~ 398 (1007)
...-.+.+.+-..+-++++|+.-. -|....+.+. .+...... +..||++|.+..
T Consensus 103 ~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~ 159 (180)
T cd03214 103 RQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLN 159 (180)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 222335556667788999998752 1333344444 22221022 567888888766
No 281
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=94.91 E-value=0.84 Score=47.04 Aligned_cols=164 Identities=18% Similarity=0.299 Sum_probs=83.8
Q ss_pred cEEEEEEcCCCChHHHHHHHHHhhhhcccCCCceEEEEecCCCCCCHHHHHHHHHHHHhhhhhhhccccCHHHHHHHHH-
Q 001843 273 TQVIALIGKAGSGKTTLARIVYNRVYVKRHFTKRAWVHIPIMSMVEDRDVLADILKQIDESLLKVEATLSAEELMWRIT- 351 (1007)
Q Consensus 273 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~l~~il~~l~~~~~~~~~~~~~~~l~~~l~- 351 (1007)
++-+.++|++|.|||-||++||++ .++.|+.|| . .++.+..+.. ....++.+.
T Consensus 181 PKGvlLygppgtGktLlaraVahh-------t~c~firvs--g----selvqk~ige-------------gsrmvrelfv 234 (404)
T KOG0728|consen 181 PKGVLLYGPPGTGKTLLARAVAHH-------TDCTFIRVS--G----SELVQKYIGE-------------GSRMVRELFV 234 (404)
T ss_pred CcceEEecCCCCchhHHHHHHHhh-------cceEEEEec--h----HHHHHHHhhh-------------hHHHHHHHHH
Confidence 367889999999999999999983 345667777 1 1222221111 011111111
Q ss_pred HHcCCCcEEEEEeCcCcc-----------Cchh-------hhhhccccCCCCCCcEEEEEcCCCccccccc--C--Ccce
Q 001843 352 QALDDSTFLIVMENAEHQ-----------KSQV-------WDSFLGKLCSFTQCGKIIITTSSTEDFVEPL--G--AAFS 409 (1007)
Q Consensus 352 ~~L~~kr~LlVlDdv~~~-----------~~~~-------~~~l~~l~~~~~~gs~IliTTR~~~~va~~~--~--~~~~ 409 (1007)
-.-..-+..|++|.++.. +.+. ++++..|- . .+.-+||..|-.-+ +.... . --..
T Consensus 235 marehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfe-a-tknikvimatnrid-ild~allrpgridr 311 (404)
T KOG0728|consen 235 MAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFE-A-TKNIKVIMATNRID-ILDPALLRPGRIDR 311 (404)
T ss_pred HHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhccccc-c-ccceEEEEeccccc-cccHhhcCCCcccc
Confidence 111345778899988621 1111 11111221 1 45667887665544 43321 1 1116
Q ss_pred eeecCCCCHHHHHHHHHhhhccccccccCCChHHHHHHHHHHHHcCCCchHHHHHHHHh
Q 001843 410 TLHVPGLGKNESWELFLKKARIAEDVLQSRSSELIKLKKQILNICDGLPLRVVLLAGLL 468 (1007)
Q Consensus 410 ~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~g~~L 468 (1007)
-++.++-+++.-.++++-+...-.- ...-+++.+|.++....|.---++.+=|+..
T Consensus 312 kiefp~p~e~ar~~ilkihsrkmnl---~rgi~l~kiaekm~gasgaevk~vcteagm~ 367 (404)
T KOG0728|consen 312 KIEFPPPNEEARLDILKIHSRKMNL---TRGINLRKIAEKMPGASGAEVKGVCTEAGMY 367 (404)
T ss_pred cccCCCCCHHHHHHHHHHhhhhhch---hcccCHHHHHHhCCCCccchhhhhhhhhhHH
Confidence 7788888887777777665432211 1223445555544433333333444444443
No 282
>PRK06696 uridine kinase; Validated
Probab=94.90 E-value=0.04 Score=58.13 Aligned_cols=22 Identities=36% Similarity=0.386 Sum_probs=21.5
Q ss_pred EEEEEEcCCCChHHHHHHHHHh
Q 001843 274 QVIALIGKAGSGKTTLARIVYN 295 (1007)
Q Consensus 274 ~vi~I~G~gGiGKTtLa~~v~~ 295 (1007)
.+|+|.|.+|+||||||++++.
T Consensus 23 ~iI~I~G~sgsGKSTlA~~L~~ 44 (223)
T PRK06696 23 LRVAIDGITASGKTTFADELAE 44 (223)
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 8999999999999999999998
No 283
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=94.89 E-value=0.1 Score=53.63 Aligned_cols=82 Identities=18% Similarity=0.222 Sum_probs=45.2
Q ss_pred EEEEEcCCCChHHHHHHHHHhhhhcccC-CC---ceEEEEecCCCCCCHHHHHHHHHHHHhhhh-hhhccccCHHHHHHH
Q 001843 275 VIALIGKAGSGKTTLARIVYNRVYVKRH-FT---KRAWVHIPIMSMVEDRDVLADILKQIDESL-LKVEATLSAEELMWR 349 (1007)
Q Consensus 275 vi~I~G~gGiGKTtLa~~v~~~~~~~~~-F~---~~~wv~~s~~~~~~~~~~l~~il~~l~~~~-~~~~~~~~~~~l~~~ 349 (1007)
||+|.|.+|+||||+|+++.. .+... +. ....+... .+.........-....... -......+.+.+.+.
T Consensus 1 IIgI~G~sgSGKTTla~~L~~--~L~~~~~~~~~~~~~~~~d---~~~~~~~~~~~~~~~~~~~~~~~p~a~d~~~l~~~ 75 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQ--ILNKRGIPAMEMDIILSLD---DFYDDYHLRDRKGRGENRYNFDHPDAFDFDLLKED 75 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHH--HHTTCTTTCCCSEEEEEGG---GGBHHHHHHHHHHHCTTTSSTTSGGGBSHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH--HhCccCcCccceeEEEeec---ccccccchhhHhhccccccCCCCccccCHHHHHHH
Confidence 799999999999999999998 44432 33 13333332 2222221111111110000 011245677778888
Q ss_pred HHHHcCCCcEEE
Q 001843 350 ITQALDDSTFLI 361 (1007)
Q Consensus 350 l~~~L~~kr~Ll 361 (1007)
+....+++..-+
T Consensus 76 l~~L~~g~~i~~ 87 (194)
T PF00485_consen 76 LKALKNGGSIEI 87 (194)
T ss_dssp HHHHHTTSCEEE
T ss_pred HHHHhCCCcccc
Confidence 877666666443
No 284
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=94.87 E-value=0.053 Score=52.26 Aligned_cols=44 Identities=30% Similarity=0.450 Sum_probs=34.1
Q ss_pred EEEEEcCCCChHHHHHHHHHhhhhcccCCCceEEEEecCCCCCCHHHHHHHHHHHHhhh
Q 001843 275 VIALIGKAGSGKTTLARIVYNRVYVKRHFTKRAWVHIPIMSMVEDRDVLADILKQIDES 333 (1007)
Q Consensus 275 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~l~~il~~l~~~ 333 (1007)
+|.|-|.+|.||||+|+.++++ ..- .-.+...++++|++..+.+
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~--~gl-------------~~vsaG~iFR~~A~e~gms 45 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEH--LGL-------------KLVSAGTIFREMARERGMS 45 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHH--hCC-------------ceeeccHHHHHHHHHcCCC
Confidence 6899999999999999999994 221 2223447889999888765
No 285
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.84 E-value=0.092 Score=59.60 Aligned_cols=87 Identities=20% Similarity=0.166 Sum_probs=52.1
Q ss_pred cEEEEEEcCCCChHHHHHHHHHhhhhcc--cCCCceEEEEecCCCCCCH--HHHHHHHHHHHhhhhhhhccccCHHHHHH
Q 001843 273 TQVIALIGKAGSGKTTLARIVYNRVYVK--RHFTKRAWVHIPIMSMVED--RDVLADILKQIDESLLKVEATLSAEELMW 348 (1007)
Q Consensus 273 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~--~~F~~~~wv~~s~~~~~~~--~~~l~~il~~l~~~~~~~~~~~~~~~l~~ 348 (1007)
+++|.++|..|+||||.+.+++...... .+-..+..+++. .+.. ..-++..+..++.+ .....+...+..
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~D---t~R~aa~eQL~~~a~~lgvp---v~~~~~~~~l~~ 247 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITID---NYRIGAKKQIQTYGDIMGIP---VKAIESFKDLKE 247 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEecc---CccHHHHHHHHHHhhcCCcc---eEeeCcHHHHHH
Confidence 3899999999999999999998743222 122346666664 3332 22355555555443 223334455555
Q ss_pred HHHHHcCCCcEEEEEeCcC
Q 001843 349 RITQALDDSTFLIVMENAE 367 (1007)
Q Consensus 349 ~l~~~L~~kr~LlVlDdv~ 367 (1007)
.+.+. .+.-+|++|-+.
T Consensus 248 ~L~~~--~~~DlVLIDTaG 264 (388)
T PRK12723 248 EITQS--KDFDLVLVDTIG 264 (388)
T ss_pred HHHHh--CCCCEEEEcCCC
Confidence 55443 345588899875
No 286
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=94.79 E-value=0.087 Score=57.91 Aligned_cols=85 Identities=18% Similarity=0.295 Sum_probs=52.8
Q ss_pred EEEEEEcCCCChHHHHHHHHHhhhhcccCCCceEEEEecCCCCCCHHHHHHHHHHHHhhhhhhhc--cccCHHHHHHHHH
Q 001843 274 QVIALIGKAGSGKTTLARIVYNRVYVKRHFTKRAWVHIPIMSMVEDRDVLADILKQIDESLLKVE--ATLSAEELMWRIT 351 (1007)
Q Consensus 274 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~l~~il~~l~~~~~~~~--~~~~~~~l~~~l~ 351 (1007)
+++-|+|..|+||||||.++.. ...+.-..++||+.. ..++. ..+..++.+....- .....++..+.+.
T Consensus 54 ~ivEi~G~~ssGKttLaL~~ia--~~q~~g~~~a~ID~e--~~ld~-----~~a~~lGvdl~rllv~~P~~~E~al~~~e 124 (322)
T PF00154_consen 54 RIVEIYGPESSGKTTLALHAIA--EAQKQGGICAFIDAE--HALDP-----EYAESLGVDLDRLLVVQPDTGEQALWIAE 124 (322)
T ss_dssp SEEEEEESTTSSHHHHHHHHHH--HHHHTT-EEEEEESS--S---H-----HHHHHTT--GGGEEEEE-SSHHHHHHHHH
T ss_pred ceEEEeCCCCCchhhhHHHHHH--hhhcccceeEEecCc--ccchh-----hHHHhcCccccceEEecCCcHHHHHHHHH
Confidence 8999999999999999999887 344444568999876 55543 45556665522211 2334555556666
Q ss_pred HHcCCC-cEEEEEeCcC
Q 001843 352 QALDDS-TFLIVMENAE 367 (1007)
Q Consensus 352 ~~L~~k-r~LlVlDdv~ 367 (1007)
+.++.. .-++|+|-|-
T Consensus 125 ~lirsg~~~lVVvDSv~ 141 (322)
T PF00154_consen 125 QLIRSGAVDLVVVDSVA 141 (322)
T ss_dssp HHHHTTSESEEEEE-CT
T ss_pred HHhhcccccEEEEecCc
Confidence 666543 4488999875
No 287
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.78 E-value=0.016 Score=36.21 Aligned_cols=22 Identities=27% Similarity=0.377 Sum_probs=18.7
Q ss_pred CCCEEeecCCcccccccccccc
Q 001843 718 CLATLDVSHTKVQRLPYAFWPS 739 (1007)
Q Consensus 718 ~L~~L~L~~~~l~~lP~~i~~L 739 (1007)
+|++|||++|+++.+|.++.+|
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~l 22 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSNL 22 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT-
T ss_pred CccEEECCCCcCEeCChhhcCC
Confidence 5899999999999999987654
No 288
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=94.74 E-value=0.2 Score=59.77 Aligned_cols=133 Identities=20% Similarity=0.219 Sum_probs=76.9
Q ss_pred cEEEEEEcCCCChHHHHHHHHHhhhhcccCCCceEEEEecCCCCCCHHHHHHHHHHHHhhhhhhhccccCHHHHHHHHHH
Q 001843 273 TQVIALIGKAGSGKTTLARIVYNRVYVKRHFTKRAWVHIPIMSMVEDRDVLADILKQIDESLLKVEATLSAEELMWRITQ 352 (1007)
Q Consensus 273 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~l~~il~~l~~~~~~~~~~~~~~~l~~~l~~ 352 (1007)
++.+-++|++|.|||.||+++++ ....+|- .+. .. . ++.. ........+...+..
T Consensus 276 ~~giLl~GpPGtGKT~lAkava~--~~~~~fi-----~v~--~~----~----l~sk--------~vGesek~ir~~F~~ 330 (494)
T COG0464 276 PKGVLLYGPPGTGKTLLAKAVAL--ESRSRFI-----SVK--GS----E----LLSK--------WVGESEKNIRELFEK 330 (494)
T ss_pred CCeeEEECCCCCCHHHHHHHHHh--hCCCeEE-----Eee--CH----H----Hhcc--------ccchHHHHHHHHHHH
Confidence 37899999999999999999999 4545543 222 00 1 1111 112233344444555
Q ss_pred HcCCCcEEEEEeCcCc------cC-----chhhhhhccccCCCC--CCcEEEEEcCCCccccccc--C--CcceeeecCC
Q 001843 353 ALDDSTFLIVMENAEH------QK-----SQVWDSFLGKLCSFT--QCGKIIITTSSTEDFVEPL--G--AAFSTLHVPG 415 (1007)
Q Consensus 353 ~L~~kr~LlVlDdv~~------~~-----~~~~~~l~~l~~~~~--~gs~IliTTR~~~~va~~~--~--~~~~~~~l~~ 415 (1007)
..+..++.|.+|.++. .+ .....++....++.. .+..||-||-.+. ..... . -....+.+.+
T Consensus 331 A~~~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~-~ld~a~lR~gRfd~~i~v~~ 409 (494)
T COG0464 331 ARKLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLVIAATNRPD-DLDPALLRPGRFDRLIYVPL 409 (494)
T ss_pred HHcCCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceEEEecCCCcc-ccCHhhcccCccceEeecCC
Confidence 5568899999999962 01 123334442222112 2323344444444 32211 1 1117888999
Q ss_pred CCHHHHHHHHHhhhcc
Q 001843 416 LGKNESWELFLKKARI 431 (1007)
Q Consensus 416 L~~~ea~~Lf~~~a~~ 431 (1007)
-+.++..+.|+.+...
T Consensus 410 pd~~~r~~i~~~~~~~ 425 (494)
T COG0464 410 PDLEERLEIFKIHLRD 425 (494)
T ss_pred CCHHHHHHHHHHHhcc
Confidence 9999999999998764
No 289
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=94.73 E-value=0.068 Score=54.89 Aligned_cols=78 Identities=13% Similarity=0.122 Sum_probs=44.9
Q ss_pred cEEEEEEcCCCChHHHHHHHHHhhhhcccCCCceEEEEecCCCCCCHHHHHHHHHHHHhhhhhhhccccCHHHHHHHHHH
Q 001843 273 TQVIALIGKAGSGKTTLARIVYNRVYVKRHFTKRAWVHIPIMSMVEDRDVLADILKQIDESLLKVEATLSAEELMWRITQ 352 (1007)
Q Consensus 273 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~l~~il~~l~~~~~~~~~~~~~~~l~~~l~~ 352 (1007)
+.+|+|.|.+|.||||+|+.+++ .+...+ ++-++-. .+-...-.....+....+ -..+...+.+-+.+.|..
T Consensus 8 ~iiIgIaG~SgSGKTTva~~l~~--~~~~~~--~~~I~~D---~YYk~~~~~~~~~~~~~n-~d~p~A~D~dLl~~~L~~ 79 (218)
T COG0572 8 VIIIGIAGGSGSGKTTVAKELSE--QLGVEK--VVVISLD---DYYKDQSHLPFEERNKIN-YDHPEAFDLDLLIEHLKD 79 (218)
T ss_pred eEEEEEeCCCCCCHHHHHHHHHH--HhCcCc--ceEeecc---ccccchhhcCHhhcCCcC-ccChhhhcHHHHHHHHHH
Confidence 48999999999999999999999 555442 2222211 111111111111111111 011245677778888888
Q ss_pred HcCCCc
Q 001843 353 ALDDST 358 (1007)
Q Consensus 353 ~L~~kr 358 (1007)
.+++++
T Consensus 80 L~~g~~ 85 (218)
T COG0572 80 LKQGKP 85 (218)
T ss_pred HHcCCc
Confidence 888887
No 290
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=94.71 E-value=0.031 Score=56.00 Aligned_cols=84 Identities=13% Similarity=0.124 Sum_probs=44.0
Q ss_pred EEEEEEcCCCChHHHHHHHHHhhhhcccCCCceEEEEecCCCCCCHHHHHHHHHHHHhhhhhhhccccCHHHHHHHHHHH
Q 001843 274 QVIALIGKAGSGKTTLARIVYNRVYVKRHFTKRAWVHIPIMSMVEDRDVLADILKQIDESLLKVEATLSAEELMWRITQA 353 (1007)
Q Consensus 274 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~l~~il~~l~~~~~~~~~~~~~~~l~~~l~~~ 353 (1007)
.++.|.|.+|+||||+|..++.. ... .++++.-. ..+ ..+..+.|...................+.+.+...
T Consensus 2 ~~ili~G~~~sGKS~~a~~l~~~--~~~---~~~~iat~--~~~-~~e~~~ri~~h~~~R~~~w~t~E~~~~l~~~i~~~ 73 (170)
T PRK05800 2 MLILVTGGARSGKSRFAERLAAQ--SGL---QVLYIATA--QPF-DDEMAARIAHHRQRRPAHWQTVEEPLDLAELLRAD 73 (170)
T ss_pred CEEEEECCCCccHHHHHHHHHHH--cCC---CcEeCcCC--CCC-hHHHHHHHHHHHhcCCCCCeEecccccHHHHHHhh
Confidence 46899999999999999999873 211 23333322 333 33444555443222100111112222344445443
Q ss_pred cCCCcEEEEEeCc
Q 001843 354 LDDSTFLIVMENA 366 (1007)
Q Consensus 354 L~~kr~LlVlDdv 366 (1007)
..+ .-++++|.+
T Consensus 74 ~~~-~~~VlID~L 85 (170)
T PRK05800 74 AAP-GRCVLVDCL 85 (170)
T ss_pred cCC-CCEEEehhH
Confidence 433 337889986
No 291
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=94.70 E-value=0.13 Score=55.49 Aligned_cols=87 Identities=17% Similarity=0.248 Sum_probs=53.1
Q ss_pred EEEEEEcCCCChHHHHHHHHHhhhhcccCCCceEEEEecCCCCCCHHHHHHHHHHH-HhhhhhhhccccCHHH---HHHH
Q 001843 274 QVIALIGKAGSGKTTLARIVYNRVYVKRHFTKRAWVHIPIMSMVEDRDVLADILKQ-IDESLLKVEATLSAEE---LMWR 349 (1007)
Q Consensus 274 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~l~~il~~-l~~~~~~~~~~~~~~~---l~~~ 349 (1007)
+++-|+|+.|.||||+|.+++- .....-..++|++.- ..+++..+. ++... +..- -.....+.++ ++..
T Consensus 61 ~ItEiyG~~gsGKT~lal~~~~--~aq~~g~~a~fIDtE--~~l~p~r~~-~l~~~~~d~l--~v~~~~~~e~q~~i~~~ 133 (279)
T COG0468 61 RITEIYGPESSGKTTLALQLVA--NAQKPGGKAAFIDTE--HALDPERAK-QLGVDLLDNL--LVSQPDTGEQQLEIAEK 133 (279)
T ss_pred eEEEEecCCCcchhhHHHHHHH--HhhcCCCeEEEEeCC--CCCCHHHHH-HHHHhhhcce--eEecCCCHHHHHHHHHH
Confidence 8999999999999999999887 344555588999987 777765433 33333 2111 0112223333 2333
Q ss_pred HHHHcCCCcEEEEEeCcC
Q 001843 350 ITQALDDSTFLIVMENAE 367 (1007)
Q Consensus 350 l~~~L~~kr~LlVlDdv~ 367 (1007)
+......+--|+|+|.+-
T Consensus 134 ~~~~~~~~i~LvVVDSva 151 (279)
T COG0468 134 LARSGAEKIDLLVVDSVA 151 (279)
T ss_pred HHHhccCCCCEEEEecCc
Confidence 333333334588888875
No 292
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=94.69 E-value=0.11 Score=55.05 Aligned_cols=128 Identities=18% Similarity=0.207 Sum_probs=72.6
Q ss_pred EEEEEEcCCCChHHHHHHHHHhhhhcccCCCceEEEEec---CCCCCCHHHHHHHHHHHHhhhhh---hhccccCHHHHH
Q 001843 274 QVIALIGKAGSGKTTLARIVYNRVYVKRHFTKRAWVHIP---IMSMVEDRDVLADILKQIDESLL---KVEATLSAEELM 347 (1007)
Q Consensus 274 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s---~~~~~~~~~~l~~il~~l~~~~~---~~~~~~~~~~l~ 347 (1007)
.+++|||..|.||||+++.+.. -. +.-...+++.-. ........+...+++..++.... ..+...+..+++
T Consensus 40 e~~glVGESG~GKSTlgr~i~~--L~-~pt~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQrQ 116 (268)
T COG4608 40 ETLGLVGESGCGKSTLGRLILG--LE-EPTSGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGGQRQ 116 (268)
T ss_pred CEEEEEecCCCCHHHHHHHHHc--Cc-CCCCceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhhh
Confidence 7999999999999999999998 33 333444444321 00122344556666666664310 111222333333
Q ss_pred -HHHHHHcCCCcEEEEEeCcCc-cCchhhhhhc----cccCCCCCCcEEEEEcCCCcccccccCCc
Q 001843 348 -WRITQALDDSTFLIVMENAEH-QKSQVWDSFL----GKLCSFTQCGKIIITTSSTEDFVEPLGAA 407 (1007)
Q Consensus 348 -~~l~~~L~~kr~LlVlDdv~~-~~~~~~~~l~----~l~~~~~~gs~IliTTR~~~~va~~~~~~ 407 (1007)
-.+.+.|.-++-|+|.|..-. -|...-.++. .+.. ..|-..+..|-+-. ++..+...
T Consensus 117 Ri~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~--~~~lt~lFIsHDL~-vv~~isdr 179 (268)
T COG4608 117 RIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQE--ELGLTYLFISHDLS-VVRYISDR 179 (268)
T ss_pred hHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHH--HhCCeEEEEEEEHH-hhhhhccc
Confidence 346677888999999998541 0111112222 2222 34556777777777 77666543
No 293
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=94.68 E-value=0.059 Score=53.89 Aligned_cols=81 Identities=14% Similarity=0.197 Sum_probs=43.1
Q ss_pred EEEEcCCCChHHHHHHHHHhhhhcccCCCceEEEEecCCCCCCHHHHHHHHHHHHhhhhhhhccccCHHHHHHHHHHHcC
Q 001843 276 IALIGKAGSGKTTLARIVYNRVYVKRHFTKRAWVHIPIMSMVEDRDVLADILKQIDESLLKVEATLSAEELMWRITQALD 355 (1007)
Q Consensus 276 i~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~l~~il~~l~~~~~~~~~~~~~~~l~~~l~~~L~ 355 (1007)
+.|.|..|+|||++|.++... ....++++.-. +.++. ++.+.|...................+.+.+.+. .
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~-----~~~~~~y~at~--~~~d~-em~~rI~~H~~~R~~~w~t~E~~~~l~~~l~~~-~ 72 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAE-----LGGPVTYIATA--EAFDD-EMAERIARHRKRRPAHWRTIETPRDLVSALKEL-D 72 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHh-----cCCCeEEEEcc--CcCCH-HHHHHHHHHHHhCCCCceEeecHHHHHHHHHhc-C
Confidence 578999999999999999863 22456666555 55543 344443332111100011122223333333221 2
Q ss_pred CCcEEEEEeCc
Q 001843 356 DSTFLIVMENA 366 (1007)
Q Consensus 356 ~kr~LlVlDdv 366 (1007)
+.-.+++|.+
T Consensus 73 -~~~~VLIDcl 82 (169)
T cd00544 73 -PGDVVLIDCL 82 (169)
T ss_pred -CCCEEEEEcH
Confidence 2337999987
No 294
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=94.67 E-value=0.18 Score=53.74 Aligned_cols=46 Identities=17% Similarity=0.242 Sum_probs=33.6
Q ss_pred EEEEEEcCCCChHHHHHHHHHhhhhcccCCCceEEEEecCCCCCCHHHHHHH
Q 001843 274 QVIALIGKAGSGKTTLARIVYNRVYVKRHFTKRAWVHIPIMSMVEDRDVLAD 325 (1007)
Q Consensus 274 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~l~~ 325 (1007)
+++.|.|.+|.|||++|.++... .. +.-+.++||+.. . +..++.+.
T Consensus 22 s~~lI~G~pGsGKT~la~~~l~~-~~-~~ge~~lyvs~e--e--~~~~i~~~ 67 (237)
T TIGR03877 22 NVVLLSGGPGTGKSIFSQQFLWN-GL-QMGEPGIYVALE--E--HPVQVRRN 67 (237)
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH-HH-HcCCcEEEEEee--C--CHHHHHHH
Confidence 89999999999999999987663 22 345678888865 3 44455444
No 295
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=94.64 E-value=0.034 Score=53.50 Aligned_cols=30 Identities=27% Similarity=0.442 Sum_probs=24.4
Q ss_pred EEEEEEcCCCChHHHHHHHHHhhhhcccC-CCc
Q 001843 274 QVIALIGKAGSGKTTLARIVYNRVYVKRH-FTK 305 (1007)
Q Consensus 274 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-F~~ 305 (1007)
--|.|.||+|+||||+++.+++ ..+.. |..
T Consensus 6 mki~ITG~PGvGKtTl~~ki~e--~L~~~g~kv 36 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIAE--KLREKGYKV 36 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHHH--HHHhcCcee
Confidence 5789999999999999999998 44433 544
No 296
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=94.57 E-value=0.24 Score=60.69 Aligned_cols=131 Identities=15% Similarity=0.167 Sum_probs=70.4
Q ss_pred EEEEEEcCCCChHHHHHHHHHhhhhcccCCCceEEEEecCCCCCCHHHHHHHHHHHHhhhhhhhccccCHHHHHHHHHHH
Q 001843 274 QVIALIGKAGSGKTTLARIVYNRVYVKRHFTKRAWVHIPIMSMVEDRDVLADILKQIDESLLKVEATLSAEELMWRITQA 353 (1007)
Q Consensus 274 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~l~~il~~l~~~~~~~~~~~~~~~l~~~l~~~ 353 (1007)
+-|.++|++|.|||++|+.+++ .....| +.+..+ . +..... ......+...+...
T Consensus 186 ~gill~G~~G~GKt~~~~~~a~--~~~~~f---~~is~~--~----------~~~~~~--------g~~~~~~~~~f~~a 240 (644)
T PRK10733 186 KGVLMVGPPGTGKTLLAKAIAG--EAKVPF---FTISGS--D----------FVEMFV--------GVGASRVRDMFEQA 240 (644)
T ss_pred CcEEEECCCCCCHHHHHHHHHH--HcCCCE---EEEehH--H----------hHHhhh--------cccHHHHHHHHHHH
Confidence 4489999999999999999998 343333 222222 1 000000 01112222333333
Q ss_pred cCCCcEEEEEeCcCcc----------Cchhhhhhc-cc---cCCC--CCCcEEEEEcCCCccccc-cc----CCcceeee
Q 001843 354 LDDSTFLIVMENAEHQ----------KSQVWDSFL-GK---LCSF--TQCGKIIITTSSTEDFVE-PL----GAAFSTLH 412 (1007)
Q Consensus 354 L~~kr~LlVlDdv~~~----------~~~~~~~l~-~l---~~~~--~~gs~IliTTR~~~~va~-~~----~~~~~~~~ 412 (1007)
-...+++|++|+++.- ....++... .+ .+++ ..+.-||.||...+ ... .. .-+ ..+.
T Consensus 241 ~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vivIaaTN~p~-~lD~Al~RpgRfd-r~i~ 318 (644)
T PRK10733 241 KKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPD-VLDPALLRPGRFD-RQVV 318 (644)
T ss_pred HhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeEEEecCChh-hcCHHHhCCcccc-eEEE
Confidence 3457899999999731 011222222 21 1221 22334455776655 322 11 112 6788
Q ss_pred cCCCCHHHHHHHHHhhhcc
Q 001843 413 VPGLGKNESWELFLKKARI 431 (1007)
Q Consensus 413 l~~L~~~ea~~Lf~~~a~~ 431 (1007)
+...+.++-.++++.+...
T Consensus 319 v~~Pd~~~R~~Il~~~~~~ 337 (644)
T PRK10733 319 VGLPDVRGREQILKVHMRR 337 (644)
T ss_pred cCCCCHHHHHHHHHHHhhc
Confidence 8888888888888877644
No 297
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=94.57 E-value=0.33 Score=52.47 Aligned_cols=150 Identities=17% Similarity=0.184 Sum_probs=84.7
Q ss_pred EEEEEEcCCCChHHHHHHHHHhhhhcccCCC-ceEEEEecCCCCC-CHHHHHHHHHHHHhhhhhhh-ccccCHHHHHHHH
Q 001843 274 QVIALIGKAGSGKTTLARIVYNRVYVKRHFT-KRAWVHIPIMSMV-EDRDVLADILKQIDESLLKV-EATLSAEELMWRI 350 (1007)
Q Consensus 274 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~-~~~wv~~s~~~~~-~~~~~l~~il~~l~~~~~~~-~~~~~~~~l~~~l 350 (1007)
--|.|+|+.|.|||+|.-.+..+ .+.|. ..+-|... ... ..+-.++.|..|+....... ....+..+...++
T Consensus 50 nsviiigprgsgkT~li~~~Ls~---~q~~~E~~l~v~Ln--g~~~~dk~al~~I~rql~~e~~~~~k~~gsfte~l~~l 124 (408)
T KOG2228|consen 50 NSVIIIGPRGSGKTILIDTRLSD---IQENGENFLLVRLN--GELQTDKIALKGITRQLALELNRIVKSFGSFTENLSKL 124 (408)
T ss_pred CceEEEccCCCCceEeeHHHHhh---HHhcCCeEEEEEEC--ccchhhHHHHHHHHHHHHHHHhhhheeecccchhHHHH
Confidence 46789999999999998888775 22232 22333333 222 23446777777776542222 1334444555555
Q ss_pred HHHcC------CCcEEEEEeCcCccCchh----hhhhccccC--CCCCCcEEEEEcCCCc------ccccccCCcceeee
Q 001843 351 TQALD------DSTFLIVMENAEHQKSQV----WDSFLGKLC--SFTQCGKIIITTSSTE------DFVEPLGAAFSTLH 412 (1007)
Q Consensus 351 ~~~L~------~kr~LlVlDdv~~~~~~~----~~~l~~l~~--~~~~gs~IliTTR~~~------~va~~~~~~~~~~~ 412 (1007)
-..|+ ..++.+|+|.++-.-... .-.+....+ . .+-+-|-+|||-.- +|-..+.-. .++-
T Consensus 125 L~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r-~Piciig~Ttrld~lE~LEKRVKSRFshr-~I~m 202 (408)
T KOG2228|consen 125 LEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSAR-APICIIGVTTRLDILELLEKRVKSRFSHR-VIFM 202 (408)
T ss_pred HHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcC-CCeEEEEeeccccHHHHHHHHHHhhcccc-eeec
Confidence 55553 235788888775211111 011111111 2 45567788999532 122333332 5777
Q ss_pred cCCCCHHHHHHHHHhhhc
Q 001843 413 VPGLGKNESWELFLKKAR 430 (1007)
Q Consensus 413 l~~L~~~ea~~Lf~~~a~ 430 (1007)
+++++-++...++++...
T Consensus 203 ~~~~~l~~yv~l~r~ll~ 220 (408)
T KOG2228|consen 203 LPSLPLGDYVDLYRKLLS 220 (408)
T ss_pred cCCCChHHHHHHHHHHhc
Confidence 788889999999988763
No 298
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=94.56 E-value=0.091 Score=52.55 Aligned_cols=22 Identities=36% Similarity=0.616 Sum_probs=19.5
Q ss_pred EEEEEEcCCCChHHHHHHHHHh
Q 001843 274 QVIALIGKAGSGKTTLARIVYN 295 (1007)
Q Consensus 274 ~vi~I~G~gGiGKTtLa~~v~~ 295 (1007)
.-|.|+|..|+||+.+|+.+++
T Consensus 23 ~pVlI~GE~GtGK~~lA~~IH~ 44 (168)
T PF00158_consen 23 LPVLITGETGTGKELLARAIHN 44 (168)
T ss_dssp S-EEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEcCCCCcHHHHHHHHHH
Confidence 4556999999999999999999
No 299
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=94.55 E-value=0.063 Score=53.52 Aligned_cols=115 Identities=20% Similarity=0.200 Sum_probs=59.5
Q ss_pred EEEEEEcCCCChHHHHHHHHHhhhhcccCCCceEEEEecCCCCCCHHHHHHHHHHHHhhhhhhhccccCHHHHHHHHHHH
Q 001843 274 QVIALIGKAGSGKTTLARIVYNRVYVKRHFTKRAWVHIPIMSMVEDRDVLADILKQIDESLLKVEATLSAEELMWRITQA 353 (1007)
Q Consensus 274 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~l~~il~~l~~~~~~~~~~~~~~~l~~~l~~~ 353 (1007)
.+++|+|..|.|||||.+.++.- . ......+++.-......+..+..+ ..++.- ..-...+...-.+.+.
T Consensus 27 e~~~l~G~nGsGKSTLl~~i~G~--~-~~~~G~v~~~g~~~~~~~~~~~~~---~~i~~~----~qLS~G~~qrl~lara 96 (163)
T cd03216 27 EVHALLGENGAGKSTLMKILSGL--Y-KPDSGEILVDGKEVSFASPRDARR---AGIAMV----YQLSVGERQMVEIARA 96 (163)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC--C-CCCCeEEEECCEECCcCCHHHHHh---cCeEEE----EecCHHHHHHHHHHHH
Confidence 79999999999999999999982 2 334455555321001111111111 011100 0111122222234455
Q ss_pred cCCCcEEEEEeCcCc-cCchhhhhhc-cccCCCCCCcEEEEEcCCCc
Q 001843 354 LDDSTFLIVMENAEH-QKSQVWDSFL-GKLCSFTQCGKIIITTSSTE 398 (1007)
Q Consensus 354 L~~kr~LlVlDdv~~-~~~~~~~~l~-~l~~~~~~gs~IliTTR~~~ 398 (1007)
+-.++-++++|+.-. -|......+. .+......|..||++|.+..
T Consensus 97 l~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~ 143 (163)
T cd03216 97 LARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLD 143 (163)
T ss_pred HhcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 666778889998752 2333344444 22221123667888888765
No 300
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=94.53 E-value=0.021 Score=70.89 Aligned_cols=116 Identities=16% Similarity=0.097 Sum_probs=58.5
Q ss_pred CCcEEEEEeCcCcc-Cchhhhhhc-cccCC-CCCCcEEEEEcCCCcccccccCCccee--eecCCCCHHHHHHHHHhhhc
Q 001843 356 DSTFLIVMENAEHQ-KSQVWDSFL-GKLCS-FTQCGKIIITTSSTEDFVEPLGAAFST--LHVPGLGKNESWELFLKKAR 430 (1007)
Q Consensus 356 ~kr~LlVlDdv~~~-~~~~~~~l~-~l~~~-~~~gs~IliTTR~~~~va~~~~~~~~~--~~l~~L~~~ea~~Lf~~~a~ 430 (1007)
..+-|+++|..-.. ++.....+. .+... ...|+.+|+||-... +.........+ ..+. ++. +......+..-
T Consensus 401 ~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~~~g~~viitTH~~e-L~~~~~~~~~v~~~~~~-~d~-~~l~p~Ykl~~ 477 (771)
T TIGR01069 401 TENSLVLFDELGAGTDPDEGSALAISILEYLLKQNAQVLITTHYKE-LKALMYNNEGVENASVL-FDE-ETLSPTYKLLK 477 (771)
T ss_pred CCCcEEEecCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEECChHH-HHHHhcCCCCeEEeEEE-EcC-CCCceEEEECC
Confidence 57899999998632 333333332 22111 134788999999877 54332221111 1110 010 11111111111
Q ss_pred cccccccCCChHHHHHHHHHHHHcCCCchHHHHHHHHhcCCCCChHHHHHHHHHcc
Q 001843 431 IAEDVLQSRSSELIKLKKQILNICDGLPLRVVLLAGLLSTKQPSYEEWSKVIERAN 486 (1007)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~g~~L~~~~~~~~~w~~~l~~l~ 486 (1007)
+ . + -...|-+|++++ |+|-.|.--|..+.... ..++..++..+.
T Consensus 478 G--~-----~--g~S~a~~iA~~~-Glp~~ii~~A~~~~~~~--~~~~~~li~~L~ 521 (771)
T TIGR01069 478 G--I-----P--GESYAFEIAQRY-GIPHFIIEQAKTFYGEF--KEEINVLIEKLS 521 (771)
T ss_pred C--C-----C--CCcHHHHHHHHh-CcCHHHHHHHHHHHHhh--HHHHHHHHHHHH
Confidence 1 0 1 134577788877 88888888777776544 445666665543
No 301
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=94.52 E-value=0.093 Score=58.57 Aligned_cols=55 Identities=15% Similarity=0.270 Sum_probs=39.2
Q ss_pred EEEEEEcCCCChHHHHHHHHHhhhhcccC----CCceEEEEecCCCCCCHHHHHHHHHHHHh
Q 001843 274 QVIALIGKAGSGKTTLARIVYNRVYVKRH----FTKRAWVHIPIMSMVEDRDVLADILKQID 331 (1007)
Q Consensus 274 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----F~~~~wv~~s~~~~~~~~~~l~~il~~l~ 331 (1007)
.++-|+|.+|+|||++|.+++-....... =..++||+.. ..++...+. ++++.++
T Consensus 103 ~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te--~~f~~~rl~-~~~~~~g 161 (317)
T PRK04301 103 SITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTE--GTFRPERIE-QMAEALG 161 (317)
T ss_pred cEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCC--CCcCHHHHH-HHHHHcC
Confidence 89999999999999999999874322211 1368999987 777766554 4444443
No 302
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=94.51 E-value=0.068 Score=57.72 Aligned_cols=23 Identities=39% Similarity=0.384 Sum_probs=18.6
Q ss_pred EEEEEEcCCCChHHHHHHHHHhh
Q 001843 274 QVIALIGKAGSGKTTLARIVYNR 296 (1007)
Q Consensus 274 ~vi~I~G~gGiGKTtLa~~v~~~ 296 (1007)
..|.|.|.+|+||||+|+++...
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~ 24 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKY 24 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHH
T ss_pred EEEEEEcCCCCcHHHHHHHHHHH
Confidence 57899999999999999999883
No 303
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=94.51 E-value=0.1 Score=58.33 Aligned_cols=22 Identities=27% Similarity=0.499 Sum_probs=20.2
Q ss_pred EEEEEEcCCCChHHHHHHHHHh
Q 001843 274 QVIALIGKAGSGKTTLARIVYN 295 (1007)
Q Consensus 274 ~vi~I~G~gGiGKTtLa~~v~~ 295 (1007)
.-|.|+|..|+||+++|+.++.
T Consensus 30 ~pVlI~GE~GtGK~~lA~~iH~ 51 (326)
T PRK11608 30 KPVLIIGERGTGKELIASRLHY 51 (326)
T ss_pred CCEEEECCCCCcHHHHHHHHHH
Confidence 5678999999999999999987
No 304
>PRK05480 uridine/cytidine kinase; Provisional
Probab=94.48 E-value=0.036 Score=57.80 Aligned_cols=25 Identities=40% Similarity=0.716 Sum_probs=22.7
Q ss_pred CcEEEEEEcCCCChHHHHHHHHHhh
Q 001843 272 TTQVIALIGKAGSGKTTLARIVYNR 296 (1007)
Q Consensus 272 ~~~vi~I~G~gGiGKTtLa~~v~~~ 296 (1007)
...+|+|.|.+|+||||||+.++..
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~~~ 29 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIYEE 29 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 3489999999999999999999983
No 305
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=94.47 E-value=0.12 Score=63.56 Aligned_cols=91 Identities=20% Similarity=0.299 Sum_probs=60.1
Q ss_pred CcEEEEEEcCCCChHHHHHHHHHhhhhcccCCCceEEEEecCCCCCCHHHHHHHHHHHHhhhhhhhccccCHHHHHHHHH
Q 001843 272 TTQVIALIGKAGSGKTTLARIVYNRVYVKRHFTKRAWVHIPIMSMVEDRDVLADILKQIDESLLKVEATLSAEELMWRIT 351 (1007)
Q Consensus 272 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~l~~il~~l~~~~~~~~~~~~~~~l~~~l~ 351 (1007)
+...+.+.|+.|+|||-||++++. .+-+..+..+-|+.+ . ... +.+-++.+ ...-..+-...|.
T Consensus 590 ~~awflflGpdgvGKt~lAkaLA~--~~Fgse~~~IriDms--e------~~e-vskligsp-----~gyvG~e~gg~Lt 653 (898)
T KOG1051|consen 590 PDAWFLFLGPDGVGKTELAKALAE--YVFGSEENFIRLDMS--E------FQE-VSKLIGSP-----PGYVGKEEGGQLT 653 (898)
T ss_pred CCeEEEEECCCchhHHHHHHHHHH--HHcCCccceEEechh--h------hhh-hhhccCCC-----cccccchhHHHHH
Confidence 337899999999999999999999 564555555555554 1 111 22222332 2223344455778
Q ss_pred HHcCCCcE-EEEEeCcCccCchhhhhhc
Q 001843 352 QALDDSTF-LIVMENAEHQKSQVWDSFL 378 (1007)
Q Consensus 352 ~~L~~kr~-LlVlDdv~~~~~~~~~~l~ 378 (1007)
+.++.++| +|.||||+..+.+....+.
T Consensus 654 eavrrrP~sVVLfdeIEkAh~~v~n~ll 681 (898)
T KOG1051|consen 654 EAVKRRPYSVVLFEEIEKAHPDVLNILL 681 (898)
T ss_pred HHHhcCCceEEEEechhhcCHHHHHHHH
Confidence 88888887 7779999977777776444
No 306
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.45 E-value=0.13 Score=57.84 Aligned_cols=88 Identities=20% Similarity=0.260 Sum_probs=50.0
Q ss_pred EEEEEEcCCCChHHHHHHHHHhhhhcccCCCceEEEEecCCCCCCHHHHHHHHHHHHhhhhhhhccccCHHHHHHHHHHH
Q 001843 274 QVIALIGKAGSGKTTLARIVYNRVYVKRHFTKRAWVHIPIMSMVEDRDVLADILKQIDESLLKVEATLSAEELMWRITQA 353 (1007)
Q Consensus 274 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~l~~il~~l~~~~~~~~~~~~~~~l~~~l~~~ 353 (1007)
.+++++|+.|+||||++.+++.....+.....+..++... ......+-++...+.++.+ .....+...+...+. .
T Consensus 138 ~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~-~R~ga~EqL~~~a~~~gv~---~~~~~~~~~l~~~l~-~ 212 (374)
T PRK14722 138 GVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDS-YRIGGHEQLRIFGKILGVP---VHAVKDGGDLQLALA-E 212 (374)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEeccc-ccccHHHHHHHHHHHcCCc---eEecCCcccHHHHHH-H
Confidence 7999999999999999999998422222223566666431 1223445555555555543 112222233333333 3
Q ss_pred cCCCcEEEEEeCcC
Q 001843 354 LDDSTFLIVMENAE 367 (1007)
Q Consensus 354 L~~kr~LlVlDdv~ 367 (1007)
+.++ -+|++|..-
T Consensus 213 l~~~-DlVLIDTaG 225 (374)
T PRK14722 213 LRNK-HMVLIDTIG 225 (374)
T ss_pred hcCC-CEEEEcCCC
Confidence 4444 456689875
No 307
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=94.44 E-value=0.038 Score=64.48 Aligned_cols=22 Identities=36% Similarity=0.668 Sum_probs=21.5
Q ss_pred EEEEEEcCCCChHHHHHHHHHh
Q 001843 274 QVIALIGKAGSGKTTLARIVYN 295 (1007)
Q Consensus 274 ~vi~I~G~gGiGKTtLa~~v~~ 295 (1007)
+++.++|++|+||||||+.+++
T Consensus 104 ~IL~LvGPpG~GKSsLa~~la~ 125 (644)
T PRK15455 104 QILYLLGPVGGGKSSLAERLKS 125 (644)
T ss_pred ceEEEecCCCCCchHHHHHHHH
Confidence 8999999999999999999998
No 308
>PRK07667 uridine kinase; Provisional
Probab=94.41 E-value=0.08 Score=54.44 Aligned_cols=22 Identities=27% Similarity=0.360 Sum_probs=21.3
Q ss_pred EEEEEEcCCCChHHHHHHHHHh
Q 001843 274 QVIALIGKAGSGKTTLARIVYN 295 (1007)
Q Consensus 274 ~vi~I~G~gGiGKTtLa~~v~~ 295 (1007)
.+|+|.|.+|.||||+|+.+..
T Consensus 18 ~iIgI~G~~gsGKStla~~L~~ 39 (193)
T PRK07667 18 FILGIDGLSRSGKTTFVANLKE 39 (193)
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 7999999999999999999998
No 309
>PTZ00035 Rad51 protein; Provisional
Probab=94.40 E-value=0.26 Score=55.23 Aligned_cols=56 Identities=14% Similarity=0.212 Sum_probs=38.4
Q ss_pred EEEEEEcCCCChHHHHHHHHHhhhhcc----cCCCceEEEEecCCCCCCHHHHHHHHHHHHhh
Q 001843 274 QVIALIGKAGSGKTTLARIVYNRVYVK----RHFTKRAWVHIPIMSMVEDRDVLADILKQIDE 332 (1007)
Q Consensus 274 ~vi~I~G~gGiGKTtLa~~v~~~~~~~----~~F~~~~wv~~s~~~~~~~~~~l~~il~~l~~ 332 (1007)
.++.|+|.+|.|||||+.+++-..... ..=..++||+.. ..++... +.++++.++.
T Consensus 119 ~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE--~~f~~er-i~~ia~~~g~ 178 (337)
T PTZ00035 119 SITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTE--GTFRPER-IVQIAERFGL 178 (337)
T ss_pred eEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEcc--CCCCHHH-HHHHHHHhCC
Confidence 899999999999999999987643321 112356799876 6666655 4445555443
No 310
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=94.33 E-value=0.71 Score=48.61 Aligned_cols=190 Identities=17% Similarity=0.246 Sum_probs=105.7
Q ss_pred EEEEEEcCCCChHHHHHHHHHhhhh----cccCCCceEEEEecCC--------CC-----------CCHHHHHHHHHHHH
Q 001843 274 QVIALIGKAGSGKTTLARIVYNRVY----VKRHFTKRAWVHIPIM--------SM-----------VEDRDVLADILKQI 330 (1007)
Q Consensus 274 ~vi~I~G~gGiGKTtLa~~v~~~~~----~~~~F~~~~wv~~s~~--------~~-----------~~~~~~l~~il~~l 330 (1007)
.-+.++|+.|.||-|.+..+.+.-. .+-+-+...|.+-++. .+ ...+-+.+++++++
T Consensus 35 PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS~yHlEitPSDaG~~DRvViQellKev 114 (351)
T KOG2035|consen 35 PHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSSNYHLEITPSDAGNYDRVVIQELLKEV 114 (351)
T ss_pred CeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecccceEEeChhhcCcccHHHHHHHHHHH
Confidence 6678999999999998888776411 1112334455543310 11 12244566666665
Q ss_pred hhhhhhhccccCHHHHHHHHHHHcCCCcE-EEEEeCcCccCchhhhhhc-cccCCCCCCcEEEEEcCCCcccccccCCcc
Q 001843 331 DESLLKVEATLSAEELMWRITQALDDSTF-LIVMENAEHQKSQVWDSFL-GKLCSFTQCGKIIITTSSTEDFVEPLGAAF 408 (1007)
Q Consensus 331 ~~~~~~~~~~~~~~~l~~~l~~~L~~kr~-LlVlDdv~~~~~~~~~~l~-~l~~~~~~gs~IliTTR~~~~va~~~~~~~ 408 (1007)
... ..-+ .-..+.| ++|+-.++.-..+.-..++ ..-.- ...+|+|+..-.-.++.....+.+
T Consensus 115 AQt--~qie-------------~~~qr~fKvvvi~ead~LT~dAQ~aLRRTMEkY-s~~~RlIl~cns~SriIepIrSRC 178 (351)
T KOG2035|consen 115 AQT--QQIE-------------TQGQRPFKVVVINEADELTRDAQHALRRTMEKY-SSNCRLILVCNSTSRIIEPIRSRC 178 (351)
T ss_pred Hhh--cchh-------------hccccceEEEEEechHhhhHHHHHHHHHHHHHH-hcCceEEEEecCcccchhHHhhhe
Confidence 443 0000 0012345 5566555533344444454 22222 556787774333222555555555
Q ss_pred eeeecCCCCHHHHHHHHHhhhccccccccCCChHHHHHHHHHHHHcCCCchHHHHHHHHhcCC---------CCChHHHH
Q 001843 409 STLHVPGLGKNESWELFLKKARIAEDVLQSRSSELIKLKKQILNICDGLPLRVVLLAGLLSTK---------QPSYEEWS 479 (1007)
Q Consensus 409 ~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~g~~L~~~---------~~~~~~w~ 479 (1007)
-.++++..+++|-...+.+.+-...- ..+ .+++.+|+++++|.---...+-...+-+ .....+|+
T Consensus 179 l~iRvpaps~eeI~~vl~~v~~kE~l---~lp---~~~l~rIa~kS~~nLRrAllmlE~~~~~n~~~~a~~~~i~~~dWe 252 (351)
T KOG2035|consen 179 LFIRVPAPSDEEITSVLSKVLKKEGL---QLP---KELLKRIAEKSNRNLRRALLMLEAVRVNNEPFTANSQVIPKPDWE 252 (351)
T ss_pred eEEeCCCCCHHHHHHHHHHHHHHhcc---cCc---HHHHHHHHHHhcccHHHHHHHHHHHHhccccccccCCCCCCccHH
Confidence 88999999999999999887765433 122 6889999999887643322222222211 11345787
Q ss_pred HHHHHc
Q 001843 480 KVIERA 485 (1007)
Q Consensus 480 ~~l~~l 485 (1007)
-...+.
T Consensus 253 ~~i~e~ 258 (351)
T KOG2035|consen 253 IYIQEI 258 (351)
T ss_pred HHHHHH
Confidence 766654
No 311
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=94.32 E-value=0.17 Score=54.68 Aligned_cols=37 Identities=16% Similarity=0.212 Sum_probs=29.0
Q ss_pred EEEEEEcCCCChHHHHHHHHHhhhhcccCCCceEEEEec
Q 001843 274 QVIALIGKAGSGKTTLARIVYNRVYVKRHFTKRAWVHIP 312 (1007)
Q Consensus 274 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s 312 (1007)
+++.|.|.+|+|||++|.+++.. -...-..+++++..
T Consensus 37 s~~lI~G~pGtGKT~l~~qf~~~--~a~~Ge~vlyis~E 73 (259)
T TIGR03878 37 SVINITGVSDTGKSLMVEQFAVT--QASRGNPVLFVTVE 73 (259)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHH--HHhCCCcEEEEEec
Confidence 89999999999999999998663 22233567888865
No 312
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=94.31 E-value=0.27 Score=51.97 Aligned_cols=47 Identities=13% Similarity=0.330 Sum_probs=32.0
Q ss_pred EEEEEEcCCCChHHHHHHHHHhhhhcccCCCceEEEEecCCCCCCHHHHHHHH
Q 001843 274 QVIALIGKAGSGKTTLARIVYNRVYVKRHFTKRAWVHIPIMSMVEDRDVLADI 326 (1007)
Q Consensus 274 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~l~~i 326 (1007)
.++.|.|.+|.||||+|.+++.. -.+.. ..+++++. ..+..++++.+
T Consensus 25 ~~~~i~G~~G~GKTtl~~~~~~~-~~~~g-~~~~yi~~----e~~~~~~~~~~ 71 (230)
T PRK08533 25 SLILIEGDESTGKSILSQRLAYG-FLQNG-YSVSYVST----QLTTTEFIKQM 71 (230)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH-HHhCC-CcEEEEeC----CCCHHHHHHHH
Confidence 79999999999999998776653 22232 44566663 33455666665
No 313
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=94.28 E-value=0.2 Score=50.76 Aligned_cols=23 Identities=43% Similarity=0.772 Sum_probs=21.5
Q ss_pred EEEEEEcCCCChHHHHHHHHHhh
Q 001843 274 QVIALIGKAGSGKTTLARIVYNR 296 (1007)
Q Consensus 274 ~vi~I~G~gGiGKTtLa~~v~~~ 296 (1007)
.+++|+|..|.|||||++.++.-
T Consensus 29 e~~~i~G~nGsGKStLl~~l~G~ 51 (178)
T cd03247 29 EKIALLGRSGSGKSTLLQLLTGD 51 (178)
T ss_pred CEEEEECCCCCCHHHHHHHHhcc
Confidence 78999999999999999999883
No 314
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=94.25 E-value=0.061 Score=53.95 Aligned_cols=37 Identities=22% Similarity=0.264 Sum_probs=30.4
Q ss_pred EEEEEEcCCCChHHHHHHHHHhhhhcc-cCCCceEEEEec
Q 001843 274 QVIALIGKAGSGKTTLARIVYNRVYVK-RHFTKRAWVHIP 312 (1007)
Q Consensus 274 ~vi~I~G~gGiGKTtLa~~v~~~~~~~-~~F~~~~wv~~s 312 (1007)
.++.++|+.|+|||.||+.++. .+. +.....+-++++
T Consensus 4 ~~~ll~GpsGvGKT~la~~la~--~l~~~~~~~~~~~d~s 41 (171)
T PF07724_consen 4 SNFLLAGPSGVGKTELAKALAE--LLFVGSERPLIRIDMS 41 (171)
T ss_dssp EEEEEESSTTSSHHHHHHHHHH--HHT-SSCCEEEEEEGG
T ss_pred EEEEEECCCCCCHHHHHHHHHH--HhccCCccchHHHhhh
Confidence 7899999999999999999999 555 555566666665
No 315
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=94.25 E-value=0.098 Score=56.20 Aligned_cols=22 Identities=32% Similarity=0.588 Sum_probs=19.8
Q ss_pred EEEEEcCCCChHHHHHHHHHhh
Q 001843 275 VIALIGKAGSGKTTLARIVYNR 296 (1007)
Q Consensus 275 vi~I~G~gGiGKTtLa~~v~~~ 296 (1007)
+|.++|++|+||||+|++++..
T Consensus 1 LIvl~G~pGSGKST~a~~La~~ 22 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAKK 22 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHHH
Confidence 3789999999999999999983
No 316
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.23 E-value=0.0013 Score=68.06 Aligned_cols=77 Identities=17% Similarity=0.027 Sum_probs=32.7
Q ss_pred CCCeEEEeecCCCCCCcccccCCCCCcEEEecccC-CCCCcCccCCCCCCceEEEEEeeecCCC-CcCccccCCCCcEEE
Q 001843 819 ELHSLKLICETPSYLPLLEMAEHYKLQKLYLSGHL-PPNSVIGDRSFPPNVVTLTLSQLRLEYD-PMPILGRLRQLKILR 896 (1007)
Q Consensus 819 ~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~L~g~~-~~lp~~~i~~~l~~L~~L~L~~~~l~~~-~~~~l~~Lp~L~~L~ 896 (1007)
+.+.|+.+++... +..-...++.|+.|.|+-|. ..+.. +.. +.+|++|.|..|.|... .+..+.++|+|+.|.
T Consensus 20 ~vkKLNcwg~~L~--DIsic~kMp~lEVLsLSvNkIssL~p--l~r-CtrLkElYLRkN~I~sldEL~YLknlpsLr~LW 94 (388)
T KOG2123|consen 20 NVKKLNCWGCGLD--DISICEKMPLLEVLSLSVNKISSLAP--LQR-CTRLKELYLRKNCIESLDELEYLKNLPSLRTLW 94 (388)
T ss_pred HhhhhcccCCCcc--HHHHHHhcccceeEEeeccccccchh--HHH-HHHHHHHHHHhcccccHHHHHHHhcCchhhhHh
Confidence 3444444443322 22223344555555555443 33321 223 45555555555544211 122344455555555
Q ss_pred eecC
Q 001843 897 LFGG 900 (1007)
Q Consensus 897 L~~~ 900 (1007)
|..|
T Consensus 95 L~EN 98 (388)
T KOG2123|consen 95 LDEN 98 (388)
T ss_pred hccC
Confidence 5444
No 317
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=94.19 E-value=0.12 Score=58.67 Aligned_cols=26 Identities=38% Similarity=0.562 Sum_probs=22.8
Q ss_pred CcEEEEEEcCCCChHHHHHHHHHhhh
Q 001843 272 TTQVIALIGKAGSGKTTLARIVYNRV 297 (1007)
Q Consensus 272 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 297 (1007)
=++=|.++|++|.|||-||++|+-..
T Consensus 336 LPKGVLLvGPPGTGKTlLARAvAGEA 361 (752)
T KOG0734|consen 336 LPKGVLLVGPPGTGKTLLARAVAGEA 361 (752)
T ss_pred CCCceEEeCCCCCchhHHHHHhhccc
Confidence 34778999999999999999999843
No 318
>PTZ00301 uridine kinase; Provisional
Probab=94.17 E-value=0.065 Score=55.61 Aligned_cols=28 Identities=32% Similarity=0.538 Sum_probs=23.6
Q ss_pred EEEEEEcCCCChHHHHHHHHHhhhhcccCC
Q 001843 274 QVIALIGKAGSGKTTLARIVYNRVYVKRHF 303 (1007)
Q Consensus 274 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F 303 (1007)
.+|+|.|.+|+||||||+.+.+ ++...+
T Consensus 4 ~iIgIaG~SgSGKTTla~~l~~--~l~~~~ 31 (210)
T PTZ00301 4 TVIGISGASGSGKSSLSTNIVS--ELMAHC 31 (210)
T ss_pred EEEEEECCCcCCHHHHHHHHHH--HHHhhc
Confidence 7999999999999999999987 443433
No 319
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=94.08 E-value=0.039 Score=52.22 Aligned_cols=21 Identities=48% Similarity=0.703 Sum_probs=19.5
Q ss_pred EEEEcCCCChHHHHHHHHHhh
Q 001843 276 IALIGKAGSGKTTLARIVYNR 296 (1007)
Q Consensus 276 i~I~G~gGiGKTtLa~~v~~~ 296 (1007)
|.|.|..|+||||+|+.+...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999999884
No 320
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.05 E-value=0.4 Score=56.41 Aligned_cols=136 Identities=15% Similarity=0.223 Sum_probs=75.7
Q ss_pred CCcEEEEEEcCCCChHHHHHHHHHhhhhcccCCCceEEEEecCCCCCCHHHHHHHHHHHHhhhhhhhccccCHHHHHHHH
Q 001843 271 TTTQVIALIGKAGSGKTTLARIVYNRVYVKRHFTKRAWVHIPIMSMVEDRDVLADILKQIDESLLKVEATLSAEELMWRI 350 (1007)
Q Consensus 271 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~l~~il~~l~~~~~~~~~~~~~~~l~~~l 350 (1007)
..++-|-.+|++|.|||++|+++++ .-.-.| +.++ -+ ++.... ...++..+.+.+
T Consensus 466 ~ppkGVLlyGPPGC~KT~lAkalAn--e~~~nF-----lsvk--gp--------EL~sk~--------vGeSEr~ir~iF 520 (693)
T KOG0730|consen 466 SPPKGVLLYGPPGCGKTLLAKALAN--EAGMNF-----LSVK--GP--------ELFSKY--------VGESERAIREVF 520 (693)
T ss_pred CCCceEEEECCCCcchHHHHHHHhh--hhcCCe-----eecc--CH--------HHHHHh--------cCchHHHHHHHH
Confidence 4558899999999999999999999 444444 4443 00 111111 122334444444
Q ss_pred HHHcCCCcEEEEEeCcCcc-----------CchhhhhhccccCCCCCCcEEEE---EcCCCcccccc-cC---Ccceeee
Q 001843 351 TQALDDSTFLIVMENAEHQ-----------KSQVWDSFLGKLCSFTQCGKIII---TTSSTEDFVEP-LG---AAFSTLH 412 (1007)
Q Consensus 351 ~~~L~~kr~LlVlDdv~~~-----------~~~~~~~l~~l~~~~~~gs~Ili---TTR~~~~va~~-~~---~~~~~~~ 412 (1007)
++.=+--+++|.||.++.. ....+.++..-.+++.....|+| |-|-.. +-.. +. -+ ..+.
T Consensus 521 ~kAR~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k~V~ViAATNRpd~-ID~ALlRPGRlD-~iiy 598 (693)
T KOG0730|consen 521 RKARQVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEALKNVLVIAATNRPDM-IDPALLRPGRLD-RIIY 598 (693)
T ss_pred HHHhhcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHcccccccCcEEEEeccCChhh-cCHHHcCCcccc-eeEe
Confidence 4444556789999988621 11122233311223222323443 333332 2222 11 22 7788
Q ss_pred cCCCCHHHHHHHHHhhhcccc
Q 001843 413 VPGLGKNESWELFLKKARIAE 433 (1007)
Q Consensus 413 l~~L~~~ea~~Lf~~~a~~~~ 433 (1007)
++.-+.+.-.++|+.++..-.
T Consensus 599 VplPD~~aR~~Ilk~~~kkmp 619 (693)
T KOG0730|consen 599 VPLPDLEARLEILKQCAKKMP 619 (693)
T ss_pred ecCccHHHHHHHHHHHHhcCC
Confidence 888888888899998876543
No 321
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=94.03 E-value=0.24 Score=55.42 Aligned_cols=56 Identities=13% Similarity=0.194 Sum_probs=40.4
Q ss_pred EEEEEEcCCCChHHHHHHHHHhhhhccc----CCCceEEEEecCCCCCCHHHHHHHHHHHHhh
Q 001843 274 QVIALIGKAGSGKTTLARIVYNRVYVKR----HFTKRAWVHIPIMSMVEDRDVLADILKQIDE 332 (1007)
Q Consensus 274 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~F~~~~wv~~s~~~~~~~~~~l~~il~~l~~ 332 (1007)
.++-|+|.+|+|||+||..++-...... .-..++||+.. ..|+..++ .+|++.++.
T Consensus 124 ~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE--~~f~~eRl-~qia~~~~~ 183 (342)
T PLN03186 124 SITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTE--GTFRPQRL-IQIAERFGL 183 (342)
T ss_pred eEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECC--CCccHHHH-HHHHHHcCC
Confidence 8999999999999999998886433211 11268999987 77777664 455666544
No 322
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=94.00 E-value=0.25 Score=49.89 Aligned_cols=22 Identities=41% Similarity=0.753 Sum_probs=21.1
Q ss_pred EEEEEEcCCCChHHHHHHHHHh
Q 001843 274 QVIALIGKAGSGKTTLARIVYN 295 (1007)
Q Consensus 274 ~vi~I~G~gGiGKTtLa~~v~~ 295 (1007)
.+++|+|..|.|||||.+.++.
T Consensus 26 e~~~l~G~nGsGKSTLl~~l~G 47 (177)
T cd03222 26 EVIGIVGPNGTGKTTAVKILAG 47 (177)
T ss_pred CEEEEECCCCChHHHHHHHHHc
Confidence 7999999999999999999987
No 323
>PRK04328 hypothetical protein; Provisional
Probab=93.95 E-value=0.16 Score=54.45 Aligned_cols=37 Identities=19% Similarity=0.294 Sum_probs=29.5
Q ss_pred EEEEEEcCCCChHHHHHHHHHhhhhcccCCCceEEEEec
Q 001843 274 QVIALIGKAGSGKTTLARIVYNRVYVKRHFTKRAWVHIP 312 (1007)
Q Consensus 274 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s 312 (1007)
+++.|.|.+|.|||+||.++... .. ..-+.++|++..
T Consensus 24 s~ili~G~pGsGKT~l~~~fl~~-~~-~~ge~~lyis~e 60 (249)
T PRK04328 24 NVVLLSGGPGTGKSIFSQQFLWN-GL-QMGEPGVYVALE 60 (249)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHH-HH-hcCCcEEEEEee
Confidence 89999999999999999997763 23 334677888865
No 324
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=93.93 E-value=0.31 Score=50.20 Aligned_cols=95 Identities=15% Similarity=0.243 Sum_probs=55.0
Q ss_pred EEEEEEcCCCChHHHHHHHHHhhhhcccCCCceEEEEecCCCCCCHHHHHHHHHHHHhhhhhhhccccCHHHHHHHHHHH
Q 001843 274 QVIALIGKAGSGKTTLARIVYNRVYVKRHFTKRAWVHIPIMSMVEDRDVLADILKQIDESLLKVEATLSAEELMWRITQA 353 (1007)
Q Consensus 274 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~l~~il~~l~~~~~~~~~~~~~~~l~~~l~~~ 353 (1007)
--|.+||--|+||+.|++++.+ .+....-.. |.|. + + +..+...+.+.++.
T Consensus 86 NnVLLwGaRGtGKSSLVKA~~~--e~~~~glrL--VEV~--k--~--------------------dl~~Lp~l~~~Lr~- 136 (287)
T COG2607 86 NNVLLWGARGTGKSSLVKALLN--EYADEGLRL--VEVD--K--E--------------------DLATLPDLVELLRA- 136 (287)
T ss_pred cceEEecCCCCChHHHHHHHHH--HHHhcCCeE--EEEc--H--H--------------------HHhhHHHHHHHHhc-
Confidence 4568999999999999999999 555554432 3333 0 0 11122222333322
Q ss_pred cCCCcEEEEEeCcCc-cCchhhhhhccccCCC---CCCcEEEEEcCCCc
Q 001843 354 LDDSTFLIVMENAEH-QKSQVWDSFLGKLCSF---TQCGKIIITTSSTE 398 (1007)
Q Consensus 354 L~~kr~LlVlDdv~~-~~~~~~~~l~~l~~~~---~~gs~IliTTR~~~ 398 (1007)
..+||.|..||... ++.+.+..++...++. .+.-.++..|.++.
T Consensus 137 -~~~kFIlFcDDLSFe~gd~~yK~LKs~LeG~ve~rP~NVl~YATSNRR 184 (287)
T COG2607 137 -RPEKFILFCDDLSFEEGDDAYKALKSALEGGVEGRPANVLFYATSNRR 184 (287)
T ss_pred -CCceEEEEecCCCCCCCchHHHHHHHHhcCCcccCCCeEEEEEecCCc
Confidence 36899999999964 3555666666333320 22334444555544
No 325
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=93.92 E-value=0.24 Score=48.18 Aligned_cols=96 Identities=15% Similarity=0.242 Sum_probs=54.4
Q ss_pred EEEEEEcCCCChHHHHHHHHHhhhhcccCCCceEEEE----ecCCCCCCHHHHHHHHHHHHhhhhhhhccccCHHHHHHH
Q 001843 274 QVIALIGKAGSGKTTLARIVYNRVYVKRHFTKRAWVH----IPIMSMVEDRDVLADILKQIDESLLKVEATLSAEELMWR 349 (1007)
Q Consensus 274 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~----~s~~~~~~~~~~l~~il~~l~~~~~~~~~~~~~~~l~~~ 349 (1007)
.+++|+|..|.|||||++.++.-. ......+|+. +. -.+. +.. .+...-.
T Consensus 27 e~~~i~G~nGsGKStLl~~l~G~~---~~~~G~i~~~~~~~i~--~~~~-----------lS~----------G~~~rv~ 80 (144)
T cd03221 27 DRIGLVGRNGAGKSTLLKLIAGEL---EPDEGIVTWGSTVKIG--YFEQ-----------LSG----------GEKMRLA 80 (144)
T ss_pred CEEEEECCCCCCHHHHHHHHcCCC---CCCceEEEECCeEEEE--EEcc-----------CCH----------HHHHHHH
Confidence 799999999999999999998832 2233444432 11 0000 111 1112223
Q ss_pred HHHHcCCCcEEEEEeCcCc-cCchhhhhhc-cccCCCCCCcEEEEEcCCCc
Q 001843 350 ITQALDDSTFLIVMENAEH-QKSQVWDSFL-GKLCSFTQCGKIIITTSSTE 398 (1007)
Q Consensus 350 l~~~L~~kr~LlVlDdv~~-~~~~~~~~l~-~l~~~~~~gs~IliTTR~~~ 398 (1007)
+.+.+-.++-++++|+... -|......+. .+... +..||++|.+..
T Consensus 81 laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~---~~til~~th~~~ 128 (144)
T cd03221 81 LAKLLLENPNLLLLDEPTNHLDLESIEALEEALKEY---PGTVILVSHDRY 128 (144)
T ss_pred HHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHc---CCEEEEEECCHH
Confidence 4455556777899998642 2444444554 33322 246788887765
No 326
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=93.91 E-value=0.17 Score=56.42 Aligned_cols=55 Identities=15% Similarity=0.260 Sum_probs=39.2
Q ss_pred EEEEEEcCCCChHHHHHHHHHhhhhccc----CCCceEEEEecCCCCCCHHHHHHHHHHHHh
Q 001843 274 QVIALIGKAGSGKTTLARIVYNRVYVKR----HFTKRAWVHIPIMSMVEDRDVLADILKQID 331 (1007)
Q Consensus 274 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~F~~~~wv~~s~~~~~~~~~~l~~il~~l~ 331 (1007)
+++-|+|.+|+||||++.+++-...... .=..++||+.. ..++...+. ++++.++
T Consensus 96 ~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te--~~f~~~rl~-~~~~~~g 154 (310)
T TIGR02236 96 AITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTE--NTFRPERIM-QMAEARG 154 (310)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECC--CCCCHHHHH-HHHHHcC
Confidence 8999999999999999999987433211 11268999987 777766543 4455443
No 327
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=93.90 E-value=0.05 Score=56.64 Aligned_cols=22 Identities=50% Similarity=0.800 Sum_probs=21.4
Q ss_pred EEEEEEcCCCChHHHHHHHHHh
Q 001843 274 QVIALIGKAGSGKTTLARIVYN 295 (1007)
Q Consensus 274 ~vi~I~G~gGiGKTtLa~~v~~ 295 (1007)
.+|+|+|.+|+||||||+.++.
T Consensus 7 ~vi~I~G~sGsGKSTl~~~l~~ 28 (207)
T TIGR00235 7 IIIGIGGGSGSGKTTVARKIYE 28 (207)
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 8999999999999999999998
No 328
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=93.89 E-value=0.031 Score=58.22 Aligned_cols=65 Identities=25% Similarity=0.198 Sum_probs=42.8
Q ss_pred CCCCcccEEEecCC--CCCCcCCCccccCCCcCcEEecccCCCcccC--cccccCCCCCEEeecCCcccc
Q 001843 666 RRLGMLKVLDLEGV--YKPMLTNNNALGRLPFLEYLGLRSTFIDSLP--DSTPILFCLATLDVSHTKVQR 731 (1007)
Q Consensus 666 ~~l~~Lr~L~Ls~~--~l~~~~lp~~i~~L~~Lr~L~L~~n~i~~LP--~~i~~L~~L~~L~L~~~~l~~ 731 (1007)
..+++|+.|++|.| ++.. .++.....+++|++|+|++|+|..+. ..+.+|.||..|++.+|....
T Consensus 62 P~Lp~LkkL~lsdn~~~~~~-~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~ 130 (260)
T KOG2739|consen 62 PKLPKLKKLELSDNYRRVSG-GLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTN 130 (260)
T ss_pred CCcchhhhhcccCCcccccc-cceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCccc
Confidence 67778888888888 4443 34444455688888888888776421 135667777788887775443
No 329
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.87 E-value=1.5 Score=49.70 Aligned_cols=155 Identities=18% Similarity=0.194 Sum_probs=82.0
Q ss_pred EEEEEEcCCCChHHHHHHHHHhhhhcccCCCceEEEEecCCCCCCHHHHHHHHHHHHhhhhhhhccccCHHHHHHHHHHH
Q 001843 274 QVIALIGKAGSGKTTLARIVYNRVYVKRHFTKRAWVHIPIMSMVEDRDVLADILKQIDESLLKVEATLSAEELMWRITQA 353 (1007)
Q Consensus 274 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~l~~il~~l~~~~~~~~~~~~~~~l~~~l~~~ 353 (1007)
|-..++|++|.|||+++.+++|. . .|+. .=+..+ ...+..+ ++.++..
T Consensus 236 RGYLLYGPPGTGKSS~IaAmAn~--L--~ydI-ydLeLt--~v~~n~d-Lr~LL~~------------------------ 283 (457)
T KOG0743|consen 236 RGYLLYGPPGTGKSSFIAAMANY--L--NYDI-YDLELT--EVKLDSD-LRHLLLA------------------------ 283 (457)
T ss_pred ccceeeCCCCCCHHHHHHHHHhh--c--CCce-EEeeec--cccCcHH-HHHHHHh------------------------
Confidence 67789999999999999999992 2 2332 112222 1111111 2221111
Q ss_pred cCCCcEEEEEeCcCcc------Cc------------hhhhhhc----cccCCCCCCcEEEE-EcCCCcccccc-cC--Cc
Q 001843 354 LDDSTFLIVMENAEHQ------KS------------QVWDSFL----GKLCSFTQCGKIII-TTSSTEDFVEP-LG--AA 407 (1007)
Q Consensus 354 L~~kr~LlVlDdv~~~------~~------------~~~~~l~----~l~~~~~~gs~Ili-TTR~~~~va~~-~~--~~ 407 (1007)
...+-+||+.|++.. .. -.+.-+. ++... +.+=|||| ||-..+++-.. ++ -.
T Consensus 284 -t~~kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSs-cg~ERIivFTTNh~EkLDPALlRpGRm 361 (457)
T KOG0743|consen 284 -TPNKSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSS-CGDERIIVFTTNHKEKLDPALLRPGRM 361 (457)
T ss_pred -CCCCcEEEEeecccccccccccccccccccCCcceeehHHhhhhhcccccc-CCCceEEEEecCChhhcCHhhcCCCcc
Confidence 235667777777621 00 0111122 22222 22346666 77665522211 11 11
Q ss_pred ceeeecCCCCHHHHHHHHHhhhccccccccCCChHHHHHHHHHHHHcCCCchHHHHHHHHhcCC
Q 001843 408 FSTLHVPGLGKNESWELFLKKARIAEDVLQSRSSELIKLKKQILNICDGLPLRVVLLAGLLSTK 471 (1007)
Q Consensus 408 ~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~g~~L~~~ 471 (1007)
...+.+.-=+.+.-..||.+......+ ..++.+|.+...|.-+.-..++..|-.+
T Consensus 362 DmhI~mgyCtf~~fK~La~nYL~~~~~---------h~L~~eie~l~~~~~~tPA~V~e~lm~~ 416 (457)
T KOG0743|consen 362 DMHIYMGYCTFEAFKTLASNYLGIEED---------HRLFDEIERLIEETEVTPAQVAEELMKN 416 (457)
T ss_pred eeEEEcCCCCHHHHHHHHHHhcCCCCC---------cchhHHHHHHhhcCccCHHHHHHHHhhc
Confidence 156777778889999999998876432 2455666666666655555555544433
No 330
>PRK15453 phosphoribulokinase; Provisional
Probab=93.87 E-value=0.83 Score=49.10 Aligned_cols=81 Identities=20% Similarity=0.168 Sum_probs=45.0
Q ss_pred EEEEEEcCCCChHHHHHHHHHhhhhcccCCCceEEEEecCCCCCCHHHHHHHHHHH--Hhhhhhh-hccccCHHHHHHHH
Q 001843 274 QVIALIGKAGSGKTTLARIVYNRVYVKRHFTKRAWVHIPIMSMVEDRDVLADILKQ--IDESLLK-VEATLSAEELMWRI 350 (1007)
Q Consensus 274 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~l~~il~~--l~~~~~~-~~~~~~~~~l~~~l 350 (1007)
.+|+|.|-+|.||||+|+.+++ .....=...+.++......++..+.-..+... -+.+... ..+..+.+.+.+.+
T Consensus 6 piI~ItG~SGsGKTTva~~l~~--if~~~~~~~~vi~~D~yh~ydr~~~~~~~~~~~r~g~nfdhf~PdAnd~dlL~~~l 83 (290)
T PRK15453 6 PIIAVTGSSGAGTTTVKRAFEK--IFRRENINAAVVEGDSFHRYTRPEMKAAIAKARAAGRHFSHFGPEANLFDELEQLF 83 (290)
T ss_pred cEEEEECCCCCCHHHHHHHHHH--HHhhcCCCeEEEecccccccChhhHhhhhHHHHhcCCCCCCCCCCcccHHHHHHHH
Confidence 7999999999999999999987 33322123455554422333433332222111 1111001 02455667777777
Q ss_pred HHHcCC
Q 001843 351 TQALDD 356 (1007)
Q Consensus 351 ~~~L~~ 356 (1007)
+...++
T Consensus 84 ~~l~~~ 89 (290)
T PRK15453 84 REYGET 89 (290)
T ss_pred HHHhcC
Confidence 776553
No 331
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=93.86 E-value=0.24 Score=59.73 Aligned_cols=23 Identities=26% Similarity=0.486 Sum_probs=20.7
Q ss_pred EEEEEEcCCCChHHHHHHHHHhh
Q 001843 274 QVIALIGKAGSGKTTLARIVYNR 296 (1007)
Q Consensus 274 ~vi~I~G~gGiGKTtLa~~v~~~ 296 (1007)
.-|.|+|..|+|||++|+.+++.
T Consensus 220 ~pvli~Ge~GtGK~~lA~~ih~~ 242 (534)
T TIGR01817 220 STVLLRGESGTGKELIAKAIHYL 242 (534)
T ss_pred CCEEEECCCCccHHHHHHHHHHh
Confidence 46789999999999999999983
No 332
>PRK06762 hypothetical protein; Provisional
Probab=93.85 E-value=0.052 Score=54.28 Aligned_cols=22 Identities=41% Similarity=0.674 Sum_probs=21.1
Q ss_pred EEEEEEcCCCChHHHHHHHHHh
Q 001843 274 QVIALIGKAGSGKTTLARIVYN 295 (1007)
Q Consensus 274 ~vi~I~G~gGiGKTtLa~~v~~ 295 (1007)
.+|.|.|++|+||||+|+.+++
T Consensus 3 ~li~i~G~~GsGKST~A~~L~~ 24 (166)
T PRK06762 3 TLIIIRGNSGSGKTTIAKQLQE 24 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 7899999999999999999998
No 333
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=93.83 E-value=0.2 Score=52.51 Aligned_cols=36 Identities=22% Similarity=0.366 Sum_probs=26.1
Q ss_pred EEEEEcCCCChHHHHHHHHHhhhhcccC-C-CceEEEEec
Q 001843 275 VIALIGKAGSGKTTLARIVYNRVYVKRH-F-TKRAWVHIP 312 (1007)
Q Consensus 275 vi~I~G~gGiGKTtLa~~v~~~~~~~~~-F-~~~~wv~~s 312 (1007)
+|+|.|.+|+||||+|+.+.. .+... . ..+..++..
T Consensus 1 IigI~G~sGSGKTTla~~L~~--~l~~~~~~~~v~vi~~D 38 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQA--LLSRWPDHPNVELITTD 38 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHH--HHhhcCCCCcEEEEecC
Confidence 589999999999999999998 44321 1 235556554
No 334
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=93.83 E-value=0.31 Score=51.59 Aligned_cols=37 Identities=22% Similarity=0.276 Sum_probs=28.8
Q ss_pred EEEEEEcCCCChHHHHHHHHHhhhhcccCCCceEEEEec
Q 001843 274 QVIALIGKAGSGKTTLARIVYNRVYVKRHFTKRAWVHIP 312 (1007)
Q Consensus 274 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s 312 (1007)
.++.|.|.+|.||||+|.+++... . ..-..++|++..
T Consensus 21 ~~~~i~G~~G~GKT~l~~~~~~~~-~-~~g~~~~~is~e 57 (229)
T TIGR03881 21 FFVAVTGEPGTGKTIFCLHFAYKG-L-RDGDPVIYVTTE 57 (229)
T ss_pred eEEEEECCCCCChHHHHHHHHHHH-H-hcCCeEEEEEcc
Confidence 899999999999999999877632 2 234567888754
No 335
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=93.82 E-value=0.16 Score=62.29 Aligned_cols=85 Identities=16% Similarity=0.200 Sum_probs=57.1
Q ss_pred EEEEEEcCCCChHHHHHHHHHhhhhcccCCCceEEEEecCCCCCCHHHHHHHHHHHHhhhhhhh--ccccCHHHHHHHHH
Q 001843 274 QVIALIGKAGSGKTTLARIVYNRVYVKRHFTKRAWVHIPIMSMVEDRDVLADILKQIDESLLKV--EATLSAEELMWRIT 351 (1007)
Q Consensus 274 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~l~~il~~l~~~~~~~--~~~~~~~~l~~~l~ 351 (1007)
+++-|+|.+|+||||||.+++.. ....-..++|+... ..++. ..+++++.+.... ......+.....+.
T Consensus 61 siteI~G~~GsGKTtLal~~~~~--a~~~G~~v~yId~E--~t~~~-----~~A~~lGvDl~~llv~~~~~~E~~l~~i~ 131 (790)
T PRK09519 61 RVIEIYGPESSGKTTVALHAVAN--AQAAGGVAAFIDAE--HALDP-----DYAKKLGVDTDSLLVSQPDTGEQALEIAD 131 (790)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEECCc--cchhH-----HHHHHcCCChhHeEEecCCCHHHHHHHHH
Confidence 89999999999999999887663 22334568899876 66663 3667776642211 12334455666666
Q ss_pred HHcCC-CcEEEEEeCcC
Q 001843 352 QALDD-STFLIVMENAE 367 (1007)
Q Consensus 352 ~~L~~-kr~LlVlDdv~ 367 (1007)
..++. +--|||+|.+-
T Consensus 132 ~lv~~~~~~LVVIDSI~ 148 (790)
T PRK09519 132 MLIRSGALDIVVIDSVA 148 (790)
T ss_pred HHhhcCCCeEEEEcchh
Confidence 66654 55699999975
No 336
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.74 E-value=0.3 Score=49.06 Aligned_cols=22 Identities=36% Similarity=0.780 Sum_probs=21.3
Q ss_pred EEEEEEcCCCChHHHHHHHHHh
Q 001843 274 QVIALIGKAGSGKTTLARIVYN 295 (1007)
Q Consensus 274 ~vi~I~G~gGiGKTtLa~~v~~ 295 (1007)
.+++|+|..|.|||||.+.++.
T Consensus 29 ~~~~l~G~nGsGKstLl~~i~G 50 (171)
T cd03228 29 EKVAIVGPSGSGKSTLLKLLLR 50 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHc
Confidence 7999999999999999999998
No 337
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=93.72 E-value=0.51 Score=55.93 Aligned_cols=23 Identities=22% Similarity=0.420 Sum_probs=20.9
Q ss_pred EEEEEEcCCCChHHHHHHHHHhh
Q 001843 274 QVIALIGKAGSGKTTLARIVYNR 296 (1007)
Q Consensus 274 ~vi~I~G~gGiGKTtLa~~v~~~ 296 (1007)
..|.|.|.+|+|||++|+.+++.
T Consensus 162 ~~vli~Ge~GtGK~~lA~~ih~~ 184 (469)
T PRK10923 162 ISVLINGESGTGKELVAHALHRH 184 (469)
T ss_pred CeEEEEeCCCCcHHHHHHHHHhc
Confidence 56889999999999999999983
No 338
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=93.70 E-value=0.054 Score=52.48 Aligned_cols=21 Identities=48% Similarity=0.697 Sum_probs=19.7
Q ss_pred EEEEEcCCCChHHHHHHHHHh
Q 001843 275 VIALIGKAGSGKTTLARIVYN 295 (1007)
Q Consensus 275 vi~I~G~gGiGKTtLa~~v~~ 295 (1007)
||.++|++|+||||+|+.+..
T Consensus 1 lii~~G~pgsGKSt~a~~l~~ 21 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAK 21 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 688999999999999999986
No 339
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=93.68 E-value=0.038 Score=51.65 Aligned_cols=28 Identities=36% Similarity=0.515 Sum_probs=19.7
Q ss_pred EEEEcCCCChHHHHHHHHHhhhhcccCCCc
Q 001843 276 IALIGKAGSGKTTLARIVYNRVYVKRHFTK 305 (1007)
Q Consensus 276 i~I~G~gGiGKTtLa~~v~~~~~~~~~F~~ 305 (1007)
|-|+|.+|+||||+|+.++. .+...|..
T Consensus 2 vLleg~PG~GKT~la~~lA~--~~~~~f~R 29 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALAR--SLGLSFKR 29 (131)
T ss_dssp EEEES---HHHHHHHHHHHH--HTT--EEE
T ss_pred EeeECCCccHHHHHHHHHHH--HcCCceeE
Confidence 57999999999999999999 67777753
No 340
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=93.67 E-value=0.22 Score=56.54 Aligned_cols=23 Identities=35% Similarity=0.543 Sum_probs=21.4
Q ss_pred EEEEEEcCCCChHHHHHHHHHhh
Q 001843 274 QVIALIGKAGSGKTTLARIVYNR 296 (1007)
Q Consensus 274 ~vi~I~G~gGiGKTtLa~~v~~~ 296 (1007)
.++.++|.+|+||||++.+++..
T Consensus 224 ~vi~lvGptGvGKTTtaaKLA~~ 246 (432)
T PRK12724 224 KVVFFVGPTGSGKTTSIAKLAAK 246 (432)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 79999999999999999999874
No 341
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=93.62 E-value=0.26 Score=52.04 Aligned_cols=128 Identities=16% Similarity=0.234 Sum_probs=69.0
Q ss_pred EEEEEEcCCCChHHHHHHHHHhhh-----hcc------cCC---CceEEEEec--CCCCC--CH----------------
Q 001843 274 QVIALIGKAGSGKTTLARIVYNRV-----YVK------RHF---TKRAWVHIP--IMSMV--ED---------------- 319 (1007)
Q Consensus 274 ~vi~I~G~gGiGKTtLa~~v~~~~-----~~~------~~F---~~~~wv~~s--~~~~~--~~---------------- 319 (1007)
.+++|+|+.|.|||||.+.+..-. ++. ..+ ..+.||.=. --..+ +.
T Consensus 31 ~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~ 110 (254)
T COG1121 31 EITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFR 110 (254)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcCcccccCCCCCcCHHHHHHccCcccccccc
Confidence 799999999999999999998711 010 001 124444210 00000 11
Q ss_pred ------HHHHHHHHHHHhhhhhhhc--cccC-HHHHHHHHHHHcCCCcEEEEEeCcC----ccCchhhhhhc-cccCCCC
Q 001843 320 ------RDVLADILKQIDESLLKVE--ATLS-AEELMWRITQALDDSTFLIVMENAE----HQKSQVWDSFL-GKLCSFT 385 (1007)
Q Consensus 320 ------~~~l~~il~~l~~~~~~~~--~~~~-~~~l~~~l~~~L~~kr~LlVlDdv~----~~~~~~~~~l~-~l~~~~~ 385 (1007)
.+...+.+++++...-... ...+ .+.-.-.+.+.|..++=|++||.-- .......-++. .+. .
T Consensus 111 ~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~---~ 187 (254)
T COG1121 111 RLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELR---Q 187 (254)
T ss_pred cccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHH---H
Confidence 2444555555544311111 2223 3333345678888999999999643 11222333333 332 2
Q ss_pred CCcEEEEEcCCCccccccc
Q 001843 386 QCGKIIITTSSTEDFVEPL 404 (1007)
Q Consensus 386 ~gs~IliTTR~~~~va~~~ 404 (1007)
.|.-||++|-+-..|...+
T Consensus 188 eg~tIl~vtHDL~~v~~~~ 206 (254)
T COG1121 188 EGKTVLMVTHDLGLVMAYF 206 (254)
T ss_pred CCCEEEEEeCCcHHhHhhC
Confidence 3788999999877444443
No 342
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=93.62 E-value=0.056 Score=45.13 Aligned_cols=22 Identities=41% Similarity=0.723 Sum_probs=20.0
Q ss_pred EEEEEcCCCChHHHHHHHHHhh
Q 001843 275 VIALIGKAGSGKTTLARIVYNR 296 (1007)
Q Consensus 275 vi~I~G~gGiGKTtLa~~v~~~ 296 (1007)
+|+|.|..|+||||+|+.+.+.
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999984
No 343
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=93.60 E-value=0.17 Score=57.67 Aligned_cols=22 Identities=45% Similarity=0.857 Sum_probs=20.3
Q ss_pred EEEEEEcCCCChHHHHHHHHHh
Q 001843 274 QVIALIGKAGSGKTTLARIVYN 295 (1007)
Q Consensus 274 ~vi~I~G~gGiGKTtLa~~v~~ 295 (1007)
.+++|+|+.|.||||||+.+.-
T Consensus 363 ~~lgIIGPSgSGKSTLaR~lvG 384 (580)
T COG4618 363 EALGIIGPSGSGKSTLARLLVG 384 (580)
T ss_pred ceEEEECCCCccHHHHHHHHHc
Confidence 6899999999999999999765
No 344
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=93.57 E-value=0.35 Score=54.12 Aligned_cols=88 Identities=16% Similarity=0.171 Sum_probs=52.5
Q ss_pred EEEEEEcCCCChHHHHHHHHHhhhhcccCCCceEEEEecCCCCCCHHHHHHHHHHHHhhhhhhhccccCHHHHHHHHHHH
Q 001843 274 QVIALIGKAGSGKTTLARIVYNRVYVKRHFTKRAWVHIPIMSMVEDRDVLADILKQIDESLLKVEATLSAEELMWRITQA 353 (1007)
Q Consensus 274 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~l~~il~~l~~~~~~~~~~~~~~~l~~~l~~~ 353 (1007)
++++|+|+.|+||||++..++.. ....-..+.+|++.. ......+-++.....++.+ .....+...+...+...
T Consensus 207 ~ii~lvGptGvGKTTt~akLA~~--l~~~g~~V~lItaDt-yR~gAveQLk~yae~lgvp---v~~~~dp~dL~~al~~l 280 (407)
T PRK12726 207 RIISLIGQTGVGKTTTLVKLGWQ--LLKQNRTVGFITTDT-FRSGAVEQFQGYADKLDVE---LIVATSPAELEEAVQYM 280 (407)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEEeCCc-cCccHHHHHHHHhhcCCCC---EEecCCHHHHHHHHHHH
Confidence 89999999999999999999874 322223566777641 1112244455555544432 11234566665555443
Q ss_pred cC-CCcEEEEEeCcC
Q 001843 354 LD-DSTFLIVMENAE 367 (1007)
Q Consensus 354 L~-~kr~LlVlDdv~ 367 (1007)
-. +..=+|++|-.-
T Consensus 281 ~~~~~~D~VLIDTAG 295 (407)
T PRK12726 281 TYVNCVDHILIDTVG 295 (407)
T ss_pred HhcCCCCEEEEECCC
Confidence 21 334578888774
No 345
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=93.57 E-value=0.53 Score=51.21 Aligned_cols=52 Identities=21% Similarity=0.215 Sum_probs=36.6
Q ss_pred EEEEEEcCCCChHHHHHHHHHhhhhcccCCCceEEEEecCCCCCCHHHHHHHHHHHH
Q 001843 274 QVIALIGKAGSGKTTLARIVYNRVYVKRHFTKRAWVHIPIMSMVEDRDVLADILKQI 330 (1007)
Q Consensus 274 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~l~~il~~l 330 (1007)
.++.|.|.+|+||||++.+++.... ..+=..++|++.. . +..++...+...+
T Consensus 31 ~~~~i~g~~G~GKT~l~~~~~~~~~-~~~g~~vl~iS~E--~--~~~~~~~r~~~~~ 82 (271)
T cd01122 31 ELIILTAGTGVGKTTFLREYALDLI-TQHGVRVGTISLE--E--PVVRTARRLLGQY 82 (271)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHH-HhcCceEEEEEcc--c--CHHHHHHHHHHHH
Confidence 7899999999999999999887421 2223467888764 3 4556666665544
No 346
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=93.56 E-value=0.14 Score=62.16 Aligned_cols=128 Identities=12% Similarity=0.113 Sum_probs=68.2
Q ss_pred EEEcCCCChHHHHHHHHHhhhhcc-cCCC-----c-eEEEEecCCCCCCHHHHHHHHHHHHhhhhhhhccccCHHHHHHH
Q 001843 277 ALIGKAGSGKTTLARIVYNRVYVK-RHFT-----K-RAWVHIPIMSMVEDRDVLADILKQIDESLLKVEATLSAEELMWR 349 (1007)
Q Consensus 277 ~I~G~gGiGKTtLa~~v~~~~~~~-~~F~-----~-~~wv~~s~~~~~~~~~~l~~il~~l~~~~~~~~~~~~~~~l~~~ 349 (1007)
.++|.+|+|||++|.-++. ++- +.-+ . ++=++++ .-+.+ ..-..+.++..+.
T Consensus 195 vLiGEpGVGKTAIvEGLA~--rIv~g~VP~~L~~~~i~sLD~g---------------~LvAG----akyRGeFEeRlk~ 253 (786)
T COG0542 195 VLVGEPGVGKTAIVEGLAQ--RIVNGDVPESLKDKRIYSLDLG---------------SLVAG----AKYRGEFEERLKA 253 (786)
T ss_pred eEecCCCCCHHHHHHHHHH--HHhcCCCCHHHcCCEEEEecHH---------------HHhcc----ccccCcHHHHHHH
Confidence 4689999999999888777 332 2211 1 1111111 11111 1234556666666
Q ss_pred HHHHcC-CCcEEEEEeCcCcc-------C--chhhhhhccccCCCCCCcEEEEEcCCCcccccccC------Ccceeeec
Q 001843 350 ITQALD-DSTFLIVMENAEHQ-------K--SQVWDSFLGKLCSFTQCGKIIITTSSTEDFVEPLG------AAFSTLHV 413 (1007)
Q Consensus 350 l~~~L~-~kr~LlVlDdv~~~-------~--~~~~~~l~~l~~~~~~gs~IliTTR~~~~va~~~~------~~~~~~~l 413 (1007)
+.+.++ .++..|++|.+... . .+.-+-+++.... +.--.|-.||-++. -+++. -..+.+.+
T Consensus 254 vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLAR-GeL~~IGATT~~EY--Rk~iEKD~AL~RRFQ~V~V 330 (786)
T COG0542 254 VLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPALAR-GELRCIGATTLDEY--RKYIEKDAALERRFQKVLV 330 (786)
T ss_pred HHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHHhc-CCeEEEEeccHHHH--HHHhhhchHHHhcCceeeC
Confidence 666664 45899999998631 1 2233333322222 22223444664432 11111 11178889
Q ss_pred CCCCHHHHHHHHHhh
Q 001843 414 PGLGKNESWELFLKK 428 (1007)
Q Consensus 414 ~~L~~~ea~~Lf~~~ 428 (1007)
...+.+++...++-.
T Consensus 331 ~EPs~e~ti~ILrGl 345 (786)
T COG0542 331 DEPSVEDTIAILRGL 345 (786)
T ss_pred CCCCHHHHHHHHHHH
Confidence 999999999888643
No 347
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.55 E-value=0.091 Score=52.94 Aligned_cols=120 Identities=18% Similarity=0.202 Sum_probs=59.4
Q ss_pred EEEEEEcCCCChHHHHHHHHHhhhhcccCCCceEEEEecCCCCCCHHHHHHHHHHHHhhhhhh--hccc--------cC-
Q 001843 274 QVIALIGKAGSGKTTLARIVYNRVYVKRHFTKRAWVHIPIMSMVEDRDVLADILKQIDESLLK--VEAT--------LS- 342 (1007)
Q Consensus 274 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~l~~il~~l~~~~~~--~~~~--------~~- 342 (1007)
.+++|+|..|.|||||.+.++... ......+++.-. ...... ..+...+.--... .... .+
T Consensus 27 e~~~i~G~nGsGKStLl~~l~G~~---~~~~G~i~~~g~--~~~~~~---~~~~~~i~~~~q~~~~~~~~tv~~~~~LS~ 98 (173)
T cd03230 27 EIYGLLGPNGAGKTTLIKIILGLL---KPDSGEIKVLGK--DIKKEP---EEVKRRIGYLPEEPSLYENLTVRENLKLSG 98 (173)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC---CCCCeEEEECCE--Ecccch---HhhhccEEEEecCCccccCCcHHHHhhcCH
Confidence 799999999999999999998831 223344444211 000000 0010111000000 0000 11
Q ss_pred HHHHHHHHHHHcCCCcEEEEEeCcCc-cCchhhhhhc-cccCCCCCCcEEEEEcCCCccccc
Q 001843 343 AEELMWRITQALDDSTFLIVMENAEH-QKSQVWDSFL-GKLCSFTQCGKIIITTSSTEDFVE 402 (1007)
Q Consensus 343 ~~~l~~~l~~~L~~kr~LlVlDdv~~-~~~~~~~~l~-~l~~~~~~gs~IliTTR~~~~va~ 402 (1007)
.+...-.+...+..++=++++|+... -|......+. .+......|..||++|.+.. .+.
T Consensus 99 G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~-~~~ 159 (173)
T cd03230 99 GMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILE-EAE 159 (173)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHH-HHH
Confidence 11222245566677888999998752 1333333333 22221123667888888876 444
No 348
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.51 E-value=0.13 Score=50.85 Aligned_cols=118 Identities=17% Similarity=0.200 Sum_probs=60.4
Q ss_pred EEEEEEcCCCChHHHHHHHHHhhhhcccCCCceEEEEecCCCCCCHHHHHHHHHHHHhhhhhhhccccCHHHHHHHHHHH
Q 001843 274 QVIALIGKAGSGKTTLARIVYNRVYVKRHFTKRAWVHIPIMSMVEDRDVLADILKQIDESLLKVEATLSAEELMWRITQA 353 (1007)
Q Consensus 274 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~l~~il~~l~~~~~~~~~~~~~~~l~~~l~~~ 353 (1007)
.+++|+|..|.|||||.+.++.. . ......+++.-.......... ....+.-. ..-...+...-.+...
T Consensus 26 ~~~~i~G~nGsGKStll~~l~g~--~-~~~~G~i~~~~~~~~~~~~~~----~~~~i~~~----~qlS~G~~~r~~l~~~ 94 (157)
T cd00267 26 EIVALVGPNGSGKSTLLRAIAGL--L-KPTSGEILIDGKDIAKLPLEE----LRRRIGYV----PQLSGGQRQRVALARA 94 (157)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC--C-CCCccEEEECCEEcccCCHHH----HHhceEEE----eeCCHHHHHHHHHHHH
Confidence 79999999999999999999983 3 234455555321001111111 11111100 0011112222234455
Q ss_pred cCCCcEEEEEeCcCc-cCchhhhhhc-cccCCCCCCcEEEEEcCCCcccccc
Q 001843 354 LDDSTFLIVMENAEH-QKSQVWDSFL-GKLCSFTQCGKIIITTSSTEDFVEP 403 (1007)
Q Consensus 354 L~~kr~LlVlDdv~~-~~~~~~~~l~-~l~~~~~~gs~IliTTR~~~~va~~ 403 (1007)
+...+-++++|+... -|......+. .+......+..++++|.+.. ....
T Consensus 95 l~~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~-~~~~ 145 (157)
T cd00267 95 LLLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPE-LAEL 145 (157)
T ss_pred HhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHH
Confidence 556678999998752 1333334443 22221022456888887766 4443
No 349
>PRK06547 hypothetical protein; Provisional
Probab=93.49 E-value=0.074 Score=53.40 Aligned_cols=25 Identities=40% Similarity=0.533 Sum_probs=22.5
Q ss_pred CcEEEEEEcCCCChHHHHHHHHHhh
Q 001843 272 TTQVIALIGKAGSGKTTLARIVYNR 296 (1007)
Q Consensus 272 ~~~vi~I~G~gGiGKTtLa~~v~~~ 296 (1007)
.+.+|+|.|..|+||||+|+.++..
T Consensus 14 ~~~~i~i~G~~GsGKTt~a~~l~~~ 38 (172)
T PRK06547 14 GMITVLIDGRSGSGKTTLAGALAAR 38 (172)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 3489999999999999999999883
No 350
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.49 E-value=0.0043 Score=64.43 Aligned_cols=80 Identities=21% Similarity=0.155 Sum_probs=64.2
Q ss_pred CCCcceEEEEeccccCCCCchhhhhhhccccccCCCCcccEEEecCCCCCCcCCCccccCCCcCcEEecccCCCcccCc-
Q 001843 633 LSWRLHSYLVFDSRIRGTPAKQIGIILGKCISKRRLGMLKVLDLEGVYKPMLTNNNALGRLPFLEYLGLRSTFIDSLPD- 711 (1007)
Q Consensus 633 ~~~~LRsL~l~~~~~~~~~~~~i~~~l~~~~~~~~l~~Lr~L~Ls~~~l~~~~lp~~i~~L~~Lr~L~L~~n~i~~LP~- 711 (1007)
++.+++.|.+.||.+.+++ ++ .+|+.|+||.||-|.|+ .+ ..+..|+.|+.|.|+.|.|..|-+
T Consensus 17 dl~~vkKLNcwg~~L~DIs----------ic--~kMp~lEVLsLSvNkIs--sL-~pl~rCtrLkElYLRkN~I~sldEL 81 (388)
T KOG2123|consen 17 DLENVKKLNCWGCGLDDIS----------IC--EKMPLLEVLSLSVNKIS--SL-APLQRCTRLKELYLRKNCIESLDEL 81 (388)
T ss_pred HHHHhhhhcccCCCccHHH----------HH--HhcccceeEEeeccccc--cc-hhHHHHHHHHHHHHHhcccccHHHH
Confidence 4567888889998886422 45 89999999999999988 55 467889999999999999887753
Q ss_pred -ccccCCCCCEEeecCC
Q 001843 712 -STPILFCLATLDVSHT 727 (1007)
Q Consensus 712 -~i~~L~~L~~L~L~~~ 727 (1007)
.+.+|++|++|.|..|
T Consensus 82 ~YLknlpsLr~LWL~EN 98 (388)
T KOG2123|consen 82 EYLKNLPSLRTLWLDEN 98 (388)
T ss_pred HHHhcCchhhhHhhccC
Confidence 4678888888888776
No 351
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=93.47 E-value=0.27 Score=54.51 Aligned_cols=37 Identities=27% Similarity=0.214 Sum_probs=27.4
Q ss_pred cEEEEEEcCCCChHHHHHHHHHhhhhcccCCCceEEEEe
Q 001843 273 TQVIALIGKAGSGKTTLARIVYNRVYVKRHFTKRAWVHI 311 (1007)
Q Consensus 273 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~ 311 (1007)
..+++++|++|+||||++..++.. ....-..+..++.
T Consensus 114 ~~vi~lvGpnGsGKTTt~~kLA~~--l~~~g~~V~Li~~ 150 (318)
T PRK10416 114 PFVILVVGVNGVGKTTTIGKLAHK--YKAQGKKVLLAAG 150 (318)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHH--HHhcCCeEEEEec
Confidence 389999999999999999999883 4333224454544
No 352
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=93.46 E-value=0.15 Score=51.28 Aligned_cols=22 Identities=50% Similarity=0.906 Sum_probs=21.2
Q ss_pred EEEEEEcCCCChHHHHHHHHHh
Q 001843 274 QVIALIGKAGSGKTTLARIVYN 295 (1007)
Q Consensus 274 ~vi~I~G~gGiGKTtLa~~v~~ 295 (1007)
.+++|+|..|.|||||.+.++.
T Consensus 29 e~~~i~G~nGsGKStLl~~l~G 50 (173)
T cd03246 29 ESLAIIGPSGSGKSTLARLILG 50 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 7999999999999999999998
No 353
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=93.46 E-value=0.26 Score=57.49 Aligned_cols=88 Identities=30% Similarity=0.328 Sum_probs=45.7
Q ss_pred EEEEEEcCCCChHHHHHHHHHhhhhcccCCCceEEEEecCCCCCCHHHHHHHHHHHHhhhhhhhccccCHHHHHHHHHHH
Q 001843 274 QVIALIGKAGSGKTTLARIVYNRVYVKRHFTKRAWVHIPIMSMVEDRDVLADILKQIDESLLKVEATLSAEELMWRITQA 353 (1007)
Q Consensus 274 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~l~~il~~l~~~~~~~~~~~~~~~l~~~l~~~ 353 (1007)
.+|+|+|.+|+||||++.+++.....+.....+..++... ......+.++.....++.. .....+...+...+.+
T Consensus 351 ~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDt-yRigA~EQLk~ya~iLgv~---v~~a~d~~~L~~aL~~- 425 (559)
T PRK12727 351 GVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDT-QRVGGREQLHSYGRQLGIA---VHEADSAESLLDLLER- 425 (559)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEeccc-ccccHHHHHHHhhcccCce---eEecCcHHHHHHHHHH-
Confidence 8999999999999999999887322222223455555431 1111222222222222221 1122334444444443
Q ss_pred cCCCcEEEEEeCcC
Q 001843 354 LDDSTFLIVMENAE 367 (1007)
Q Consensus 354 L~~kr~LlVlDdv~ 367 (1007)
+.+ .=+||+|..-
T Consensus 426 l~~-~DLVLIDTaG 438 (559)
T PRK12727 426 LRD-YKLVLIDTAG 438 (559)
T ss_pred hcc-CCEEEecCCC
Confidence 333 4478888764
No 354
>PRK03839 putative kinase; Provisional
Probab=93.46 E-value=0.059 Score=54.73 Aligned_cols=22 Identities=36% Similarity=0.768 Sum_probs=20.2
Q ss_pred EEEEEcCCCChHHHHHHHHHhh
Q 001843 275 VIALIGKAGSGKTTLARIVYNR 296 (1007)
Q Consensus 275 vi~I~G~gGiGKTtLa~~v~~~ 296 (1007)
.|.|+|++|+||||+|+.+++.
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~ 23 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEK 23 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4889999999999999999993
No 355
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=93.43 E-value=0.26 Score=52.36 Aligned_cols=22 Identities=32% Similarity=0.652 Sum_probs=21.1
Q ss_pred EEEEEEcCCCChHHHHHHHHHh
Q 001843 274 QVIALIGKAGSGKTTLARIVYN 295 (1007)
Q Consensus 274 ~vi~I~G~gGiGKTtLa~~v~~ 295 (1007)
.+++|+|+.|.|||||.+.++.
T Consensus 29 ~i~~iiGpNG~GKSTLLk~l~g 50 (258)
T COG1120 29 EITGILGPNGSGKSTLLKCLAG 50 (258)
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 8999999999999999999887
No 356
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=93.34 E-value=0.063 Score=55.87 Aligned_cols=69 Identities=10% Similarity=-0.019 Sum_probs=42.9
Q ss_pred CCCCcccEEEecCCCCCCcCCC----ccccCCCcCcEEecccCCCcccC--------------cccccCCCCCEEeecCC
Q 001843 666 RRLGMLKVLDLEGVYKPMLTNN----NALGRLPFLEYLGLRSTFIDSLP--------------DSTPILFCLATLDVSHT 727 (1007)
Q Consensus 666 ~~l~~Lr~L~Ls~~~l~~~~lp----~~i~~L~~Lr~L~L~~n~i~~LP--------------~~i~~L~~L~~L~L~~~ 727 (1007)
.+|++|+..+||.|-+.. ..| +.|++-..|.+|.|++|.+.-+. +...+-+.|++.+...|
T Consensus 89 lkcp~l~~v~LSDNAfg~-~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrN 167 (388)
T COG5238 89 LKCPRLQKVDLSDNAFGS-EFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRN 167 (388)
T ss_pred hcCCcceeeeccccccCc-ccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccc
Confidence 577777777777776654 333 33456666777777777665332 12334567888888777
Q ss_pred cccccccc
Q 001843 728 KVQRLPYA 735 (1007)
Q Consensus 728 ~l~~lP~~ 735 (1007)
++...|..
T Consensus 168 Rlengs~~ 175 (388)
T COG5238 168 RLENGSKE 175 (388)
T ss_pred hhccCcHH
Confidence 77665543
No 357
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=93.33 E-value=0.16 Score=51.55 Aligned_cols=22 Identities=27% Similarity=0.702 Sum_probs=21.2
Q ss_pred EEEEEEcCCCChHHHHHHHHHh
Q 001843 274 QVIALIGKAGSGKTTLARIVYN 295 (1007)
Q Consensus 274 ~vi~I~G~gGiGKTtLa~~v~~ 295 (1007)
.+++|+|..|.|||||.+.++.
T Consensus 27 ~~~~i~G~nGsGKSTLl~~l~G 48 (182)
T cd03215 27 EIVGIAGLVGNGQTELAEALFG 48 (182)
T ss_pred cEEEEECCCCCCHHHHHHHHhC
Confidence 7899999999999999999997
No 358
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=93.33 E-value=0.23 Score=57.06 Aligned_cols=87 Identities=21% Similarity=0.190 Sum_probs=48.8
Q ss_pred EEEEEEcCCCChHHHHHHHHHhhhhcccCCCceEEEEecCCCCCCHHHHHHHHHHHHhhh-----hhhhc-------ccc
Q 001843 274 QVIALIGKAGSGKTTLARIVYNRVYVKRHFTKRAWVHIPIMSMVEDRDVLADILKQIDES-----LLKVE-------ATL 341 (1007)
Q Consensus 274 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~l~~il~~l~~~-----~~~~~-------~~~ 341 (1007)
..++|+|..|.|||||++.++.. ......++|+.-. +..+..++....+...... ....+ ...
T Consensus 166 qri~I~G~SGsGKTTLL~~Ia~l---~~pd~gvv~liGe--rgrev~e~~~~~l~~~r~rtI~vV~qsd~~~~~r~~~~~ 240 (450)
T PRK06002 166 QRIGIFAGSGVGKSTLLAMLARA---DAFDTVVIALVGE--RGREVREFLEDTLADNLKKAVAVVATSDESPMMRRLAPL 240 (450)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC---CCCCeeeeeeccc--CCccHHHHhHHHHHHhhCCeEEEEEcCCCCHHHHHHHHH
Confidence 78999999999999999988872 1222344554322 3445555444444433111 00000 111
Q ss_pred CHHHHHHHHHHHcCCCcEEEEEeCcC
Q 001843 342 SAEELMWRITQALDDSTFLIVMENAE 367 (1007)
Q Consensus 342 ~~~~l~~~l~~~L~~kr~LlVlDdv~ 367 (1007)
..-...+.++. +++.+|+++||+-
T Consensus 241 ~a~~iAEyfrd--~G~~Vll~~DslT 264 (450)
T PRK06002 241 TATAIAEYFRD--RGENVLLIVDSVT 264 (450)
T ss_pred HHHHHHHHHHH--cCCCEEEeccchH
Confidence 12223334443 4899999999985
No 359
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=93.31 E-value=0.11 Score=50.80 Aligned_cols=35 Identities=40% Similarity=0.334 Sum_probs=29.2
Q ss_pred EEEEEEcCCCChHHHHHHHHHhhhhcccCCCceEEEE
Q 001843 274 QVIALIGKAGSGKTTLARIVYNRVYVKRHFTKRAWVH 310 (1007)
Q Consensus 274 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~ 310 (1007)
.||-|.|.+|.||||||+++.. +....-..++++.
T Consensus 3 ~vIwltGlsGsGKtTlA~~L~~--~L~~~g~~~~~LD 37 (156)
T PF01583_consen 3 FVIWLTGLSGSGKTTLARALER--RLFARGIKVYLLD 37 (156)
T ss_dssp EEEEEESSTTSSHHHHHHHHHH--HHHHTTS-EEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHH--HHHHcCCcEEEec
Confidence 7899999999999999999999 6666656677775
No 360
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=93.30 E-value=0.54 Score=47.95 Aligned_cols=129 Identities=18% Similarity=0.200 Sum_probs=70.3
Q ss_pred EEEEEEcCCCChHHHHHHHHHhhhhcccCCCceEEEEecC-----------------CCCC-------------------
Q 001843 274 QVIALIGKAGSGKTTLARIVYNRVYVKRHFTKRAWVHIPI-----------------MSMV------------------- 317 (1007)
Q Consensus 274 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~-----------------~~~~------------------- 317 (1007)
.|++|+|+.|.|||||.+.+.. ....=...+||.-.. .+.|
T Consensus 29 evv~iiGpSGSGKSTlLRclN~---LE~~~~G~I~i~g~~~~~~~~~~~~R~~vGmVFQ~fnLFPHlTvleNv~lap~~v 105 (240)
T COG1126 29 EVVVIIGPSGSGKSTLLRCLNG---LEEPDSGSITVDGEDVGDKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLAPVKV 105 (240)
T ss_pred CEEEEECCCCCCHHHHHHHHHC---CcCCCCceEEECCEeccchhhHHHHHHhcCeecccccccccchHHHHHHhhhHHH
Confidence 8999999999999999999876 222223345553100 0111
Q ss_pred ------CHHHHHHHHHHHHhhhhhh--hcc-ccCHHHHHHHHHHHcCCCcEEEEEeCcCcc-Cchhhhhhc-cccCCCCC
Q 001843 318 ------EDRDVLADILKQIDESLLK--VEA-TLSAEELMWRITQALDDSTFLIVMENAEHQ-KSQVWDSFL-GKLCSFTQ 386 (1007)
Q Consensus 318 ------~~~~~l~~il~~l~~~~~~--~~~-~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~-~~~~~~~l~-~l~~~~~~ 386 (1007)
...+...+++..++..... .+. -...++-.-.|.+.|.-++=++.+|..-.. |++...++. -+.+-...
T Consensus 106 ~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~e 185 (240)
T COG1126 106 KKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEE 185 (240)
T ss_pred cCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHc
Confidence 1123333444444332110 011 122333344577778888889999997522 454444444 22222244
Q ss_pred CcEEEEEcCCCcccccccCC
Q 001843 387 CGKIIITTSSTEDFVEPLGA 406 (1007)
Q Consensus 387 gs~IliTTR~~~~va~~~~~ 406 (1007)
|--.||.|-... .|..+..
T Consensus 186 GmTMivVTHEM~-FAr~Vad 204 (240)
T COG1126 186 GMTMIIVTHEMG-FAREVAD 204 (240)
T ss_pred CCeEEEEechhH-HHHHhhh
Confidence 666666676666 7766544
No 361
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=93.30 E-value=0.23 Score=49.89 Aligned_cols=27 Identities=37% Similarity=0.557 Sum_probs=22.6
Q ss_pred EEEEEEcCCCChHHHHHHHHHhhhhcccC
Q 001843 274 QVIALIGKAGSGKTTLARIVYNRVYVKRH 302 (1007)
Q Consensus 274 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~ 302 (1007)
+.|-+.|.+|+||||+|++++. ..++.
T Consensus 2 pLiIlTGyPgsGKTtfakeLak--~L~~~ 28 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAK--ELRQE 28 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHH--HHHHh
Confidence 5688999999999999999998 44443
No 362
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=93.27 E-value=0.14 Score=54.07 Aligned_cols=88 Identities=23% Similarity=0.297 Sum_probs=50.6
Q ss_pred EEEEEEcCCCChHHHHHHHHHhhhhcccCCCceEEEEecCCCCCCHHHHHHHHHHHHhhhhhhh------------cc--
Q 001843 274 QVIALIGKAGSGKTTLARIVYNRVYVKRHFTKRAWVHIPIMSMVEDRDVLADILKQIDESLLKV------------EA-- 339 (1007)
Q Consensus 274 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~l~~il~~l~~~~~~~------------~~-- 339 (1007)
+++.|.|.+|+|||++|.++... ..+..=+.++||+.. .+ ..++.+.+- .++-+.... ..
T Consensus 20 s~~li~G~~GsGKT~l~~q~l~~-~~~~~ge~vlyvs~e--e~--~~~l~~~~~-s~g~d~~~~~~~g~l~~~d~~~~~~ 93 (226)
T PF06745_consen 20 SVVLISGPPGSGKTTLALQFLYN-GLKNFGEKVLYVSFE--EP--PEELIENMK-SFGWDLEEYEDSGKLKIIDAFPERI 93 (226)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHH-HHHHHT--EEEEESS--S---HHHHHHHHH-TTTS-HHHHHHTTSEEEEESSGGGS
T ss_pred cEEEEEeCCCCCcHHHHHHHHHH-hhhhcCCcEEEEEec--CC--HHHHHHHHH-HcCCcHHHHhhcCCEEEEecccccc
Confidence 89999999999999999997653 222213467888765 33 344443332 333221110 01
Q ss_pred ---ccCHHHHHHHHHHHcCC-CcEEEEEeCcC
Q 001843 340 ---TLSAEELMWRITQALDD-STFLIVMENAE 367 (1007)
Q Consensus 340 ---~~~~~~l~~~l~~~L~~-kr~LlVlDdv~ 367 (1007)
..+...+...+.+.++. +...+|+|.+.
T Consensus 94 ~~~~~~~~~l~~~i~~~i~~~~~~~vVIDsls 125 (226)
T PF06745_consen 94 GWSPNDLEELLSKIREAIEELKPDRVVIDSLS 125 (226)
T ss_dssp T-TSCCHHHHHHHHHHHHHHHTSSEEEEETHH
T ss_pred cccccCHHHHHHHHHHHHHhcCCCEEEEECHH
Confidence 24566666666666553 34678888764
No 363
>PRK00625 shikimate kinase; Provisional
Probab=93.26 E-value=0.066 Score=53.80 Aligned_cols=21 Identities=29% Similarity=0.389 Sum_probs=19.6
Q ss_pred EEEEEcCCCChHHHHHHHHHh
Q 001843 275 VIALIGKAGSGKTTLARIVYN 295 (1007)
Q Consensus 275 vi~I~G~gGiGKTtLa~~v~~ 295 (1007)
.|.++||+|+||||+++.+++
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~ 22 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAK 22 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 378999999999999999988
No 364
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=93.21 E-value=0.14 Score=51.58 Aligned_cols=22 Identities=36% Similarity=0.671 Sum_probs=20.1
Q ss_pred EEEEEcCCCChHHHHHHHHHhh
Q 001843 275 VIALIGKAGSGKTTLARIVYNR 296 (1007)
Q Consensus 275 vi~I~G~gGiGKTtLa~~v~~~ 296 (1007)
.|.|.|.+|.||||+|+.+.+.
T Consensus 2 riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4689999999999999999994
No 365
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=93.19 E-value=0.25 Score=50.85 Aligned_cols=26 Identities=38% Similarity=0.560 Sum_probs=23.2
Q ss_pred CCcEEEEEEcCCCChHHHHHHHHHhh
Q 001843 271 TTTQVIALIGKAGSGKTTLARIVYNR 296 (1007)
Q Consensus 271 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 296 (1007)
.+++-|.++|++|.|||.||++|+|+
T Consensus 187 dpprgvllygppg~gktml~kava~~ 212 (408)
T KOG0727|consen 187 DPPRGVLLYGPPGTGKTMLAKAVANH 212 (408)
T ss_pred CCCcceEEeCCCCCcHHHHHHHHhhc
Confidence 44588899999999999999999994
No 366
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=93.15 E-value=0.33 Score=50.50 Aligned_cols=84 Identities=17% Similarity=0.210 Sum_probs=50.5
Q ss_pred EEEEEEcCCCChHHHHHHHHHhhhhcccCCCceEEEEecCCCCC-CHHHHHHHHHHHHhhhhhhh-----cccc------
Q 001843 274 QVIALIGKAGSGKTTLARIVYNRVYVKRHFTKRAWVHIPIMSMV-EDRDVLADILKQIDESLLKV-----EATL------ 341 (1007)
Q Consensus 274 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~-~~~~~l~~il~~l~~~~~~~-----~~~~------ 341 (1007)
+-++|+|..|+|||+|+..+.++. .-+.++++.++ +.. ...++.+++...-..+ .. ..++
T Consensus 16 qr~~I~g~~g~GKt~Ll~~i~~~~----~~d~~V~~~iG--er~~Ev~~~~~~~~~~~~~~--~t~vv~~t~~~~~~~r~ 87 (215)
T PF00006_consen 16 QRIGIFGGAGVGKTVLLQEIANNQ----DADVVVYALIG--ERGREVTEFIEELKGEGALE--RTVVVAATSDEPPAARY 87 (215)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHC----TTTEEEEEEES--ECHHHHHHHHHHHHHTTGGG--GEEEEEEETTS-HHHHH
T ss_pred CEEEEEcCcccccchhhHHHHhcc----cccceeeeecc--ccchhHHHHHHHHhhccccc--ccccccccchhhHHHHh
Confidence 678999999999999999999853 23345777776 443 3444444442221111 00 0111
Q ss_pred ----CHHHHHHHHHHHcCCCcEEEEEeCcC
Q 001843 342 ----SAEELMWRITQALDDSTFLIVMENAE 367 (1007)
Q Consensus 342 ----~~~~l~~~l~~~L~~kr~LlVlDdv~ 367 (1007)
..-...+.++. +++.+|+++||+.
T Consensus 88 ~~~~~a~t~AEyfrd--~G~dVlli~Dslt 115 (215)
T PF00006_consen 88 RAPYTALTIAEYFRD--QGKDVLLIIDSLT 115 (215)
T ss_dssp HHHHHHHHHHHHHHH--TTSEEEEEEETHH
T ss_pred hhhccchhhhHHHhh--cCCceeehhhhhH
Confidence 11223444444 7999999999984
No 367
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=93.14 E-value=0.29 Score=54.78 Aligned_cols=22 Identities=27% Similarity=0.493 Sum_probs=20.3
Q ss_pred EEEEEEcCCCChHHHHHHHHHh
Q 001843 274 QVIALIGKAGSGKTTLARIVYN 295 (1007)
Q Consensus 274 ~vi~I~G~gGiGKTtLa~~v~~ 295 (1007)
.-|.|+|..|+||+++|+.+++
T Consensus 23 ~pVLI~GE~GtGK~~lAr~iH~ 44 (329)
T TIGR02974 23 RPVLIIGERGTGKELIAARLHY 44 (329)
T ss_pred CCEEEECCCCChHHHHHHHHHH
Confidence 5678999999999999999987
No 368
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=93.14 E-value=0.33 Score=56.19 Aligned_cols=86 Identities=24% Similarity=0.243 Sum_probs=47.9
Q ss_pred EEEEEEcCCCChHHHHHHHHHhhhhcccCCCceEEEEecCCCCCCH--HHHHHHHHHHHhhhhhhhccccCHHHHHHHHH
Q 001843 274 QVIALIGKAGSGKTTLARIVYNRVYVKRHFTKRAWVHIPIMSMVED--RDVLADILKQIDESLLKVEATLSAEELMWRIT 351 (1007)
Q Consensus 274 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~--~~~l~~il~~l~~~~~~~~~~~~~~~l~~~l~ 351 (1007)
++++++|++|+||||++.+++........-..+..|+.. .+.. .+-++.....++.+ .....+...+...+.
T Consensus 222 ~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D---~~r~~a~eqL~~~a~~~~vp---~~~~~~~~~l~~~l~ 295 (424)
T PRK05703 222 GVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLD---TYRIGAVEQLKTYAKIMGIP---VEVVYDPKELAKALE 295 (424)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECC---ccHHHHHHHHHHHHHHhCCc---eEccCCHHhHHHHHH
Confidence 799999999999999999887732212333456667654 2221 12233333333322 112334455555554
Q ss_pred HHcCCCcEEEEEeCcC
Q 001843 352 QALDDSTFLIVMENAE 367 (1007)
Q Consensus 352 ~~L~~kr~LlVlDdv~ 367 (1007)
+. . ..=+||+|..-
T Consensus 296 ~~-~-~~DlVlIDt~G 309 (424)
T PRK05703 296 QL-R-DCDVILIDTAG 309 (424)
T ss_pred Hh-C-CCCEEEEeCCC
Confidence 42 3 34588889763
No 369
>PRK04040 adenylate kinase; Provisional
Probab=93.12 E-value=0.078 Score=54.12 Aligned_cols=22 Identities=32% Similarity=0.527 Sum_probs=21.2
Q ss_pred EEEEEEcCCCChHHHHHHHHHh
Q 001843 274 QVIALIGKAGSGKTTLARIVYN 295 (1007)
Q Consensus 274 ~vi~I~G~gGiGKTtLa~~v~~ 295 (1007)
.+|+|+|++|+||||+++.+.+
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~ 24 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALE 24 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHH
Confidence 7899999999999999999988
No 370
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.08 E-value=0.54 Score=48.35 Aligned_cols=58 Identities=14% Similarity=0.102 Sum_probs=35.5
Q ss_pred HHHHHHHcCCCcEEEEEeCcCccCchhhhhhc----cccCCCCCCcEEEEEcCCCcccccccCCc
Q 001843 347 MWRITQALDDSTFLIVMENAEHQKSQVWDSFL----GKLCSFTQCGKIIITTSSTEDFVEPLGAA 407 (1007)
Q Consensus 347 ~~~l~~~L~~kr~LlVlDdv~~~~~~~~~~l~----~l~~~~~~gs~IliTTR~~~~va~~~~~~ 407 (1007)
...+.+.+--++-|.|||..+ +.-+.+.++ .+-.--..|+-+||.|-.+. ++.+..++
T Consensus 152 R~EilQ~~~lePkl~ILDE~D--SGLDIdalk~V~~~i~~lr~~~~~~liITHy~r-ll~~i~pD 213 (251)
T COG0396 152 RNEILQLLLLEPKLAILDEPD--SGLDIDALKIVAEGINALREEGRGVLIITHYQR-LLDYIKPD 213 (251)
T ss_pred HHHHHHHHhcCCCEEEecCCC--cCccHHHHHHHHHHHHHHhcCCCeEEEEecHHH-HHhhcCCC
Confidence 334555555677899999987 444444333 11111134667777777777 88887765
No 371
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=93.00 E-value=0.4 Score=49.15 Aligned_cols=39 Identities=28% Similarity=0.440 Sum_probs=27.6
Q ss_pred EEEEEEcCCCChHHHHHHHHHhhhhcccCC--------CceEEEEec
Q 001843 274 QVIALIGKAGSGKTTLARIVYNRVYVKRHF--------TKRAWVHIP 312 (1007)
Q Consensus 274 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F--------~~~~wv~~s 312 (1007)
.++.|+|.+|+||||++.+++........| ..++|+...
T Consensus 33 ~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E 79 (193)
T PF13481_consen 33 ELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLE 79 (193)
T ss_dssp SEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESS
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEecc
Confidence 689999999999999999998854333333 247787754
No 372
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=92.99 E-value=0.23 Score=56.28 Aligned_cols=37 Identities=32% Similarity=0.323 Sum_probs=29.4
Q ss_pred EEEEEEcCCCChHHHHHHHHHhhhhcccCCCceEEEEec
Q 001843 274 QVIALIGKAGSGKTTLARIVYNRVYVKRHFTKRAWVHIP 312 (1007)
Q Consensus 274 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s 312 (1007)
.++.|.|.+|+|||||+.+++.. ....-..++|++..
T Consensus 83 slvLI~G~pG~GKStLllq~a~~--~a~~g~~VlYvs~E 119 (372)
T cd01121 83 SVILIGGDPGIGKSTLLLQVAAR--LAKRGGKVLYVSGE 119 (372)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHH--HHhcCCeEEEEECC
Confidence 89999999999999999999873 33333567787654
No 373
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=92.96 E-value=0.23 Score=50.04 Aligned_cols=116 Identities=17% Similarity=0.190 Sum_probs=60.0
Q ss_pred EEEEEEcCCCChHHHHHHHHHhhh-hc--ccC---CC--ceEEEEecCCCCCCHHHHHHHHHHHHhhhh---hhhccccC
Q 001843 274 QVIALIGKAGSGKTTLARIVYNRV-YV--KRH---FT--KRAWVHIPIMSMVEDRDVLADILKQIDESL---LKVEATLS 342 (1007)
Q Consensus 274 ~vi~I~G~gGiGKTtLa~~v~~~~-~~--~~~---F~--~~~wv~~s~~~~~~~~~~l~~il~~l~~~~---~~~~~~~~ 342 (1007)
.+++|+|..|.|||||.+.+..+. .+ ... |. .+.| +. + .+.+..++... .......+
T Consensus 22 ~~~~l~G~nG~GKSTLl~~il~~~G~v~~~~~~~~~~~~~~~~--~~--q--------~~~l~~~~L~~~~~~~~~~~LS 89 (176)
T cd03238 22 VLVVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLIF--ID--Q--------LQFLIDVGLGYLTLGQKLSTLS 89 (176)
T ss_pred CEEEEECCCCCCHHHHHHHHhhcCCcEEECCcccccccccEEE--Eh--H--------HHHHHHcCCCccccCCCcCcCC
Confidence 799999999999999999986421 11 111 10 1222 22 2 34555555320 01111111
Q ss_pred H-HHHHHHHHHHcCCC--cEEEEEeCcCc-cCchhhhhhc-cccCCCCCCcEEEEEcCCCccccc
Q 001843 343 A-EELMWRITQALDDS--TFLIVMENAEH-QKSQVWDSFL-GKLCSFTQCGKIIITTSSTEDFVE 402 (1007)
Q Consensus 343 ~-~~l~~~l~~~L~~k--r~LlVlDdv~~-~~~~~~~~l~-~l~~~~~~gs~IliTTR~~~~va~ 402 (1007)
. +...-.+...+-.+ +=++++|..-. -+....+.+. .+......|..||++|.+.. ...
T Consensus 90 gGq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~-~~~ 153 (176)
T cd03238 90 GGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLD-VLS 153 (176)
T ss_pred HHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHH
Confidence 1 22222344455555 67888898642 1333344444 22221124667888888877 544
No 374
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=92.93 E-value=0.088 Score=53.71 Aligned_cols=22 Identities=32% Similarity=0.578 Sum_probs=21.2
Q ss_pred EEEEEEcCCCChHHHHHHHHHh
Q 001843 274 QVIALIGKAGSGKTTLARIVYN 295 (1007)
Q Consensus 274 ~vi~I~G~gGiGKTtLa~~v~~ 295 (1007)
.+|.|+|.+|+||||+|+.++.
T Consensus 4 ~ii~i~G~~GsGKsTl~~~l~~ 25 (188)
T TIGR01360 4 KIIFIVGGPGSGKGTQCEKIVE 25 (188)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 8999999999999999999987
No 375
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=92.88 E-value=0.2 Score=54.17 Aligned_cols=37 Identities=24% Similarity=0.259 Sum_probs=33.2
Q ss_pred EEEEEEcCCCChHHHHHHHHHhhhhcccCCCceEEEEec
Q 001843 274 QVIALIGKAGSGKTTLARIVYNRVYVKRHFTKRAWVHIP 312 (1007)
Q Consensus 274 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s 312 (1007)
+++.|+|.+|+|||++|.++.. ...++...++||+..
T Consensus 24 ~~~lI~G~pGsGKT~f~~qfl~--~~~~~ge~vlyvs~~ 60 (260)
T COG0467 24 SVVLITGPPGTGKTIFALQFLY--EGAREGEPVLYVSTE 60 (260)
T ss_pred cEEEEEcCCCCcHHHHHHHHHH--HHHhcCCcEEEEEec
Confidence 8999999999999999999988 566668889999876
No 376
>PRK00131 aroK shikimate kinase; Reviewed
Probab=92.87 E-value=0.088 Score=52.93 Aligned_cols=22 Identities=41% Similarity=0.682 Sum_probs=21.2
Q ss_pred EEEEEEcCCCChHHHHHHHHHh
Q 001843 274 QVIALIGKAGSGKTTLARIVYN 295 (1007)
Q Consensus 274 ~vi~I~G~gGiGKTtLa~~v~~ 295 (1007)
..|.|+|++|+||||+|+.++.
T Consensus 5 ~~i~l~G~~GsGKstla~~La~ 26 (175)
T PRK00131 5 PNIVLIGFMGAGKSTIGRLLAK 26 (175)
T ss_pred CeEEEEcCCCCCHHHHHHHHHH
Confidence 6899999999999999999999
No 377
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=92.86 E-value=0.054 Score=56.44 Aligned_cols=112 Identities=21% Similarity=0.085 Sum_probs=71.4
Q ss_pred CeEEEEEecCCCCCCCCCcCCCcceEEEEeccccCCCCchhhhhhhccccccCCCCcccEEEecCCCCCCcCCCccccCC
Q 001843 614 AVRRLAANLGSNSFPYSSLLSWRLHSYLVFDSRIRGTPAKQIGIILGKCISKRRLGMLKVLDLEGVYKPMLTNNNALGRL 693 (1007)
Q Consensus 614 ~~r~Lsl~~~~~~~~~~~~~~~~LRsL~l~~~~~~~~~~~~i~~~l~~~~~~~~l~~Lr~L~Ls~~~l~~~~lp~~i~~L 693 (1007)
...++++.+.........+.+++|+.|.++.|...... -+.-.. .++++|++|+|++|++....-...+..+
T Consensus 44 ~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~------~l~vl~--e~~P~l~~l~ls~Nki~~lstl~pl~~l 115 (260)
T KOG2739|consen 44 ELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSG------GLEVLA--EKAPNLKVLNLSGNKIKDLSTLRPLKEL 115 (260)
T ss_pred chhhhhhhccceeecccCCCcchhhhhcccCCcccccc------cceehh--hhCCceeEEeecCCccccccccchhhhh
Confidence 34555555544444445578899999999999442111 233334 6789999999999998721111234567
Q ss_pred CcCcEEecccCCCcccCc----ccccCCCCCEEeecCCcccccc
Q 001843 694 PFLEYLGLRSTFIDSLPD----STPILFCLATLDVSHTKVQRLP 733 (1007)
Q Consensus 694 ~~Lr~L~L~~n~i~~LP~----~i~~L~~L~~L~L~~~~l~~lP 733 (1007)
.+|..|++.+|..+.+-. -+.-+++|.+||-....=.+.|
T Consensus 116 ~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv~~~Ea~ 159 (260)
T KOG2739|consen 116 ENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDVDGEEAP 159 (260)
T ss_pred cchhhhhcccCCccccccHHHHHHHHhhhhccccccccCCcccc
Confidence 788899999887766532 2455777888776554333333
No 378
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=92.80 E-value=0.75 Score=50.41 Aligned_cols=118 Identities=17% Similarity=0.243 Sum_probs=61.3
Q ss_pred cEEEEEEcCCCChHHHHHHHHHhhh-hcccCCCceEEEE----ecCCCCC-----CHHHHHHHHHHHHhhhhhhh--ccc
Q 001843 273 TQVIALIGKAGSGKTTLARIVYNRV-YVKRHFTKRAWVH----IPIMSMV-----EDRDVLADILKQIDESLLKV--EAT 340 (1007)
Q Consensus 273 ~~vi~I~G~gGiGKTtLa~~v~~~~-~~~~~F~~~~wv~----~s~~~~~-----~~~~~l~~il~~l~~~~~~~--~~~ 340 (1007)
+..|.+.|.+|.|||-||.+..=.. ..++.|..++-.. ++ ++. ...+-+.-.++.+..++... ...
T Consensus 245 I~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~KiiVtRp~vpvG--~dIGfLPG~eEeKm~PWmq~i~DnLE~L~~~~~ 322 (436)
T COG1875 245 IDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRKIIVTRPTVPVG--EDIGFLPGTEEEKMGPWMQAIFDNLEVLFSPNE 322 (436)
T ss_pred CCeEEeeccCCccHhHHHHHHHHHHHHHHhhhceEEEecCCcCcc--cccCcCCCchhhhccchHHHHHhHHHHHhcccc
Confidence 3899999999999999998765432 3355566544321 22 111 11222222222222211000 011
Q ss_pred cCHHHHHHHHH---------HHcCCC---cEEEEEeCcCccCchhhhhhccccCCCCCCcEEEEEcC
Q 001843 341 LSAEELMWRIT---------QALDDS---TFLIVMENAEHQKSQVWDSFLGKLCSFTQCGKIIITTS 395 (1007)
Q Consensus 341 ~~~~~l~~~l~---------~~L~~k---r~LlVlDdv~~~~~~~~~~l~~l~~~~~~gs~IliTTR 395 (1007)
.....+...+. .+.+++ +-+||+|.+.+-.+.+...+. ... +.||||+.|--
T Consensus 323 ~~~~~l~~~l~~~~iev~alt~IRGRSl~~~FiIIDEaQNLTpheikTil--tR~-G~GsKIVl~gd 386 (436)
T COG1875 323 PGDRALEEILSRGRIEVEALTYIRGRSLPDSFIIIDEAQNLTPHELKTIL--TRA-GEGSKIVLTGD 386 (436)
T ss_pred cchHHHHHHHhccceeeeeeeeecccccccceEEEehhhccCHHHHHHHH--Hhc-cCCCEEEEcCC
Confidence 12222222211 123454 459999999865555544443 334 89999998865
No 379
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=92.78 E-value=0.66 Score=49.44 Aligned_cols=23 Identities=30% Similarity=0.442 Sum_probs=20.2
Q ss_pred EEEEEEcCCCChHHHHHHHHHhh
Q 001843 274 QVIALIGKAGSGKTTLARIVYNR 296 (1007)
Q Consensus 274 ~vi~I~G~gGiGKTtLa~~v~~~ 296 (1007)
.+-.|+|+||+|||+||.+++-.
T Consensus 2 ~~~ll~g~~G~GKS~lal~la~~ 24 (239)
T cd01125 2 YVSALVAPGGTGKSSLLLVLALA 24 (239)
T ss_pred ceeEEEcCCCCCHHHHHHHHHHH
Confidence 46789999999999999999873
No 380
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=92.76 E-value=0.58 Score=53.68 Aligned_cols=38 Identities=34% Similarity=0.398 Sum_probs=26.9
Q ss_pred EEEEEEcCCCChHHHHHHHHHhhhhcccCCCceEEEEe
Q 001843 274 QVIALIGKAGSGKTTLARIVYNRVYVKRHFTKRAWVHI 311 (1007)
Q Consensus 274 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~ 311 (1007)
.+++++|..|+||||++..++........-+.+.+++.
T Consensus 192 ~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~ 229 (420)
T PRK14721 192 GVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTT 229 (420)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEec
Confidence 79999999999999999988873222222344555554
No 381
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=92.76 E-value=0.39 Score=53.98 Aligned_cols=61 Identities=26% Similarity=0.299 Sum_probs=42.4
Q ss_pred CCCcEEEEEEcCCCChHHHHHHHHHhhhhcccCCCceEEEEecCCCCCCHHHHHHHHHHHHhhh
Q 001843 270 TTTTQVIALIGKAGSGKTTLARIVYNRVYVKRHFTKRAWVHIPIMSMVEDRDVLADILKQIDES 333 (1007)
Q Consensus 270 ~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~l~~il~~l~~~ 333 (1007)
...+.||-.+|.=|.||||-|-++++ .++++=..+.-|++. ...+...+-++.+.++++.+
T Consensus 97 ~~~P~vImmvGLQGsGKTTt~~KLA~--~lkk~~~kvllVaaD-~~RpAA~eQL~~La~q~~v~ 157 (451)
T COG0541 97 KKPPTVILMVGLQGSGKTTTAGKLAK--YLKKKGKKVLLVAAD-TYRPAAIEQLKQLAEQVGVP 157 (451)
T ss_pred CCCCeEEEEEeccCCChHhHHHHHHH--HHHHcCCceEEEecc-cCChHHHHHHHHHHHHcCCc
Confidence 34559999999999999999999998 565532334444432 13445566677777777665
No 382
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=92.75 E-value=0.025 Score=57.80 Aligned_cols=22 Identities=32% Similarity=0.303 Sum_probs=19.3
Q ss_pred EEEEEcCCCChHHHHHHHHHhh
Q 001843 275 VIALIGKAGSGKTTLARIVYNR 296 (1007)
Q Consensus 275 vi~I~G~gGiGKTtLa~~v~~~ 296 (1007)
++.|.|..|.||||+.+.+.-.
T Consensus 1 ~~~ltG~N~~GKst~l~~i~~~ 22 (185)
T smart00534 1 VVIITGPNMGGKSTYLRQVGLI 22 (185)
T ss_pred CEEEECCCCCcHHHHHHHHHHH
Confidence 4689999999999999999843
No 383
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=92.72 E-value=0.84 Score=47.55 Aligned_cols=129 Identities=15% Similarity=0.246 Sum_probs=68.0
Q ss_pred EEEEEEcCCCChHHHHHHHHHhhhhcccCCCceEEEEecCCCCCCHHHHHHHHHHHHhhhhhhhccccCHHHHHHHHH-H
Q 001843 274 QVIALIGKAGSGKTTLARIVYNRVYVKRHFTKRAWVHIPIMSMVEDRDVLADILKQIDESLLKVEATLSAEELMWRIT-Q 352 (1007)
Q Consensus 274 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~l~~il~~l~~~~~~~~~~~~~~~l~~~l~-~ 352 (1007)
+-|..+|++|.|||.+|++++|. .+-.| +-|... +++..--+ +....+..+- +
T Consensus 152 knVLFyGppGTGKTm~Akalane--~kvp~---l~vkat------------~liGehVG---------dgar~Ihely~r 205 (368)
T COG1223 152 KNVLFYGPPGTGKTMMAKALANE--AKVPL---LLVKAT------------ELIGEHVG---------DGARRIHELYER 205 (368)
T ss_pred ceeEEECCCCccHHHHHHHHhcc--cCCce---EEechH------------HHHHHHhh---------hHHHHHHHHHHH
Confidence 78899999999999999999994 33222 222211 12211111 1111222222 2
Q ss_pred HcCCCcEEEEEeCcCcc-----------C-chhhhhhc-ccc--CCCCCCcEEEEEcCCCccccc-ccCCcc-eeeecCC
Q 001843 353 ALDDSTFLIVMENAEHQ-----------K-SQVWDSFL-GKL--CSFTQCGKIIITTSSTEDFVE-PLGAAF-STLHVPG 415 (1007)
Q Consensus 353 ~L~~kr~LlVlDdv~~~-----------~-~~~~~~l~-~l~--~~~~~gs~IliTTR~~~~va~-~~~~~~-~~~~l~~ 415 (1007)
.-+.-+|.+.+|.++.. + .+..+.+. .+- .. +-|-..|-.|-+.. ... ...+.. .-++..-
T Consensus 206 A~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~e-neGVvtIaaTN~p~-~LD~aiRsRFEeEIEF~L 283 (368)
T COG1223 206 ARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKE-NEGVVTIAATNRPE-LLDPAIRSRFEEEIEFKL 283 (368)
T ss_pred HHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCccc-CCceEEEeecCChh-hcCHHHHhhhhheeeeeC
Confidence 22356899999987621 0 11112222 111 12 34555555555554 332 223322 5566667
Q ss_pred CCHHHHHHHHHhhhc
Q 001843 416 LGKNESWELFLKKAR 430 (1007)
Q Consensus 416 L~~~ea~~Lf~~~a~ 430 (1007)
-+++|-.+++..++.
T Consensus 284 P~~eEr~~ile~y~k 298 (368)
T COG1223 284 PNDEERLEILEYYAK 298 (368)
T ss_pred CChHHHHHHHHHHHH
Confidence 788888888877764
No 384
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=92.70 E-value=0.45 Score=51.43 Aligned_cols=113 Identities=17% Similarity=0.087 Sum_probs=59.5
Q ss_pred EEEEEEcCCCChHHHHHHHHHhhhhcccCCCceEEEEecCCCCCCHHHHHHHHHHHHhh-hhhhhc---cccCHHHHHHH
Q 001843 274 QVIALIGKAGSGKTTLARIVYNRVYVKRHFTKRAWVHIPIMSMVEDRDVLADILKQIDE-SLLKVE---ATLSAEELMWR 349 (1007)
Q Consensus 274 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~l~~il~~l~~-~~~~~~---~~~~~~~l~~~ 349 (1007)
.-++|+|..|.|||||.+.++. .+. .....+|+.-. .-...+...++...... +..... +..+...-...
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~--~~~-~~~G~i~~~g~---~v~~~d~~~ei~~~~~~~~q~~~~~r~~v~~~~~k~~~ 185 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLAR--ILS-TGISQLGLRGK---KVGIVDERSEIAGCVNGVPQHDVGIRTDVLDGCPKAEG 185 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhC--ccC-CCCceEEECCE---EeecchhHHHHHHHhcccccccccccccccccchHHHH
Confidence 6889999999999999999998 333 33344454211 11000111233322211 100000 01111111112
Q ss_pred HHHHcC-CCcEEEEEeCcCccCchhhhhhc-cccCCCCCCcEEEEEcCCCc
Q 001843 350 ITQALD-DSTFLIVMENAEHQKSQVWDSFL-GKLCSFTQCGKIIITTSSTE 398 (1007)
Q Consensus 350 l~~~L~-~kr~LlVlDdv~~~~~~~~~~l~-~l~~~~~~gs~IliTTR~~~ 398 (1007)
+...+. ..+=++++|.+- ..+.+..+. .+ ..|..||+||-+..
T Consensus 186 ~~~~i~~~~P~villDE~~--~~e~~~~l~~~~----~~G~~vI~ttH~~~ 230 (270)
T TIGR02858 186 MMMLIRSMSPDVIVVDEIG--REEDVEALLEAL----HAGVSIIATAHGRD 230 (270)
T ss_pred HHHHHHhCCCCEEEEeCCC--cHHHHHHHHHHH----hCCCEEEEEechhH
Confidence 233332 478899999987 666566555 43 34678999998655
No 385
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=92.70 E-value=0.49 Score=56.10 Aligned_cols=51 Identities=16% Similarity=0.184 Sum_probs=35.4
Q ss_pred EEEEEEcCCCChHHHHHHHHHhhhhcccCCCceEEEEecCCCCCCHHHHHHHHHHHHh
Q 001843 274 QVIALIGKAGSGKTTLARIVYNRVYVKRHFTKRAWVHIPIMSMVEDRDVLADILKQID 331 (1007)
Q Consensus 274 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~l~~il~~l~ 331 (1007)
.++.|.|.+|+|||||+.+++.. ..++-+.+++++.. .+..++.+.+ +.++
T Consensus 264 s~~li~G~~G~GKt~l~~~f~~~--~~~~ge~~~y~s~e----Es~~~i~~~~-~~lg 314 (484)
T TIGR02655 264 SIILATGATGTGKTLLVSKFLEN--ACANKERAILFAYE----ESRAQLLRNA-YSWG 314 (484)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH--HHHCCCeEEEEEee----CCHHHHHHHH-HHcC
Confidence 89999999999999999999884 33344566777643 4444555443 4443
No 386
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=92.64 E-value=0.34 Score=52.80 Aligned_cols=78 Identities=17% Similarity=0.219 Sum_probs=44.1
Q ss_pred CcEEEEEEcCCCChHHHHHHHHHhhhhcccCC--CceEEEEecCCCCCCHHHHHHHHHHHHhh-hhhhhccccCHHHHHH
Q 001843 272 TTQVIALIGKAGSGKTTLARIVYNRVYVKRHF--TKRAWVHIPIMSMVEDRDVLADILKQIDE-SLLKVEATLSAEELMW 348 (1007)
Q Consensus 272 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F--~~~~wv~~s~~~~~~~~~~l~~il~~l~~-~~~~~~~~~~~~~l~~ 348 (1007)
.+.+|+|.|..|+||||+|+.+.. .+.... ..+..++.. .-....+.+.. .+. +........+...+..
T Consensus 61 ~p~IIGIaG~~GSGKSTlar~L~~--ll~~~~~~g~V~vi~~D--~f~~~~~~l~~----~g~~~~~g~P~s~D~~~l~~ 132 (290)
T TIGR00554 61 IPYIISIAGSVAVGKSTTARILQA--LLSRWPEHRKVELITTD--GFLHPNQVLKE----RNLMKKKGFPESYDMHRLVK 132 (290)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH--HHhhcCCCCceEEEecc--cccccHHHHHH----cCCccccCCChhccHHHHHH
Confidence 348999999999999999988766 333222 135555544 22222222221 111 1012235667777777
Q ss_pred HHHHHcCCC
Q 001843 349 RITQALDDS 357 (1007)
Q Consensus 349 ~l~~~L~~k 357 (1007)
.+.....++
T Consensus 133 ~L~~Lk~g~ 141 (290)
T TIGR00554 133 FLSDLKSGK 141 (290)
T ss_pred HHHHHHCCC
Confidence 776665554
No 387
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=92.63 E-value=0.041 Score=57.87 Aligned_cols=23 Identities=22% Similarity=0.273 Sum_probs=20.8
Q ss_pred EEEEEEcCCCChHHHHHHHHHhh
Q 001843 274 QVIALIGKAGSGKTTLARIVYNR 296 (1007)
Q Consensus 274 ~vi~I~G~gGiGKTtLa~~v~~~ 296 (1007)
+++.|.|..|.||||+.+.+...
T Consensus 31 ~~~~l~G~n~~GKstll~~i~~~ 53 (222)
T cd03285 31 RFLIITGPNMGGKSTYIRQIGVI 53 (222)
T ss_pred eEEEEECCCCCChHHHHHHHHHH
Confidence 89999999999999999987753
No 388
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=92.63 E-value=0.16 Score=59.86 Aligned_cols=28 Identities=29% Similarity=0.699 Sum_probs=25.6
Q ss_pred EEEEEEcCCCChHHHHHHHHHhhhhcccCC
Q 001843 274 QVIALIGKAGSGKTTLARIVYNRVYVKRHF 303 (1007)
Q Consensus 274 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F 303 (1007)
++++.+|++|+|||.+|+.++. ...+.|
T Consensus 439 kIlCf~GPPGVGKTSI~kSIA~--ALnRkF 466 (906)
T KOG2004|consen 439 KILCFVGPPGVGKTSIAKSIAR--ALNRKF 466 (906)
T ss_pred cEEEEeCCCCCCcccHHHHHHH--HhCCce
Confidence 8999999999999999999999 676666
No 389
>PRK11823 DNA repair protein RadA; Provisional
Probab=92.62 E-value=0.67 Score=54.16 Aligned_cols=37 Identities=30% Similarity=0.273 Sum_probs=28.9
Q ss_pred EEEEEEcCCCChHHHHHHHHHhhhhcccCCCceEEEEec
Q 001843 274 QVIALIGKAGSGKTTLARIVYNRVYVKRHFTKRAWVHIP 312 (1007)
Q Consensus 274 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s 312 (1007)
.++.|.|.+|+|||||+.+++.+ ....-..++|++..
T Consensus 81 s~~lI~G~pG~GKTtL~lq~a~~--~a~~g~~vlYvs~E 117 (446)
T PRK11823 81 SVVLIGGDPGIGKSTLLLQVAAR--LAAAGGKVLYVSGE 117 (446)
T ss_pred EEEEEECCCCCCHHHHHHHHHHH--HHhcCCeEEEEEcc
Confidence 79999999999999999999884 32333457787754
No 390
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=92.60 E-value=0.2 Score=55.33 Aligned_cols=47 Identities=26% Similarity=0.251 Sum_probs=33.1
Q ss_pred EEEEEEcCCCChHHHHHHHHHhhhhcccCCCceEEEEecCCCCCCHHHHHH
Q 001843 274 QVIALIGKAGSGKTTLARIVYNRVYVKRHFTKRAWVHIPIMSMVEDRDVLA 324 (1007)
Q Consensus 274 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~l~ 324 (1007)
+++.+.|.||+||||+|-+.+- ........++-|+.. ...+..+++.
T Consensus 3 riv~f~GKGGVGKTT~aaA~A~--~lA~~g~kvLlvStD--PAhsL~d~f~ 49 (322)
T COG0003 3 RIVFFTGKGGVGKTTIAAATAV--KLAESGKKVLLVSTD--PAHSLGDVFD 49 (322)
T ss_pred EEEEEecCCcccHHHHHHHHHH--HHHHcCCcEEEEEeC--CCCchHhhhc
Confidence 8999999999999999999666 344444556666665 4445444443
No 391
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=92.54 E-value=2.6 Score=45.98 Aligned_cols=70 Identities=11% Similarity=0.143 Sum_probs=50.5
Q ss_pred CCcEEEEEeCcCccCchhhhhhc-cccCCCCCCcEEEEEcCCCcccccccCCcceeeecCCCCHHHHHHHHHh
Q 001843 356 DSTFLIVMENAEHQKSQVWDSFL-GKLCSFTQCGKIIITTSSTEDFVEPLGAAFSTLHVPGLGKNESWELFLK 427 (1007)
Q Consensus 356 ~kr~LlVlDdv~~~~~~~~~~l~-~l~~~~~~gs~IliTTR~~~~va~~~~~~~~~~~l~~L~~~ea~~Lf~~ 427 (1007)
+++-++|+|+++.-....++.+. .+-.. ..++.+|++|.+...+.....+.+..+.+.+ +.++..+.+..
T Consensus 103 ~~~kV~II~~ad~m~~~AaNaLLKtLEEP-p~~t~~iL~t~~~~~lLpTI~SRcq~i~f~~-~~~~~~~~L~~ 173 (290)
T PRK07276 103 GKQQVFIIKDADKMHVNAANSLLKVIEEP-QSEIYIFLLTNDENKVLPTIKSRTQIFHFPK-NEAYLIQLLEQ 173 (290)
T ss_pred CCcEEEEeehhhhcCHHHHHHHHHHhcCC-CCCeEEEEEECChhhCchHHHHcceeeeCCC-cHHHHHHHHHH
Confidence 55668999999977788888887 44333 5556777777666658887777778888877 66666666643
No 392
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=92.52 E-value=0.65 Score=54.71 Aligned_cols=159 Identities=16% Similarity=0.144 Sum_probs=84.7
Q ss_pred CCCCCcEEEEEEcCCCChHHHHHHHHHhhhhcccCCCceEEEEecCCCCCCHHHHHHHHHHHHhhhhhhhccccCHHHHH
Q 001843 268 TTTTTTQVIALIGKAGSGKTTLARIVYNRVYVKRHFTKRAWVHIPIMSMVEDRDVLADILKQIDESLLKVEATLSAEELM 347 (1007)
Q Consensus 268 ~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~l~~il~~l~~~~~~~~~~~~~~~l~ 347 (1007)
.+...++-+-.+|++|.|||-++++|+++ ..-+ .+.+. ..+ ++.... ......+.
T Consensus 213 ~g~~~prg~Ll~gppg~Gkt~l~~aVa~e--~~a~-----~~~i~------~pe----li~k~~--------gEte~~LR 267 (693)
T KOG0730|consen 213 IGIKPPRGLLLYGPPGTGKTFLVRAVANE--YGAF-----LFLIN------GPE----LISKFP--------GETESNLR 267 (693)
T ss_pred cCCCCCCCccccCCCCCChHHHHHHHHHH--hCce-----eEecc------cHH----HHHhcc--------cchHHHHH
Confidence 45556688999999999999999999994 3211 11121 111 222222 22455566
Q ss_pred HHHHHHcCCC-cEEEEEeCcCccC----------chhhhhhccccCCCCCCcEEE--EEcCCCcccccccC--Ccceeee
Q 001843 348 WRITQALDDS-TFLIVMENAEHQK----------SQVWDSFLGKLCSFTQCGKII--ITTSSTEDFVEPLG--AAFSTLH 412 (1007)
Q Consensus 348 ~~l~~~L~~k-r~LlVlDdv~~~~----------~~~~~~l~~l~~~~~~gs~Il--iTTR~~~~va~~~~--~~~~~~~ 412 (1007)
..+.+..+.+ +..|.+|+++..- ...-.++..+.++.++.+++| -||+.++.+-.... -...-+.
T Consensus 268 ~~f~~a~k~~~psii~IdEld~l~p~r~~~~~~e~Rv~sqlltL~dg~~~~~~vivl~atnrp~sld~alRRgRfd~ev~ 347 (693)
T KOG0730|consen 268 KAFAEALKFQVPSIIFIDELDALCPKREGADDVESRVVSQLLTLLDGLKPDAKVIVLAATNRPDSLDPALRRGRFDREVE 347 (693)
T ss_pred HHHHHHhccCCCeeEeHHhHhhhCCcccccchHHHHHHHHHHHHHhhCcCcCcEEEEEecCCccccChhhhcCCCcceee
Confidence 7777777788 9999999986311 111223333444434334443 37776652322222 1114555
Q ss_pred cCCCCHHHHHHHHHhhhccccccccCCChHHHHHHHHHHHHcCCCc
Q 001843 413 VPGLGKNESWELFLKKARIAEDVLQSRSSELIKLKKQILNICDGLP 458 (1007)
Q Consensus 413 l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~~~~I~~~c~GlP 458 (1007)
+.-.+..+-.+++..+...... . .......|+..+.|.-
T Consensus 348 IgiP~~~~RldIl~~l~k~~~~-----~--~~~~l~~iA~~thGyv 386 (693)
T KOG0730|consen 348 IGIPGSDGRLDILRVLTKKMNL-----L--SDVDLEDIAVSTHGYV 386 (693)
T ss_pred ecCCCchhHHHHHHHHHHhcCC-----c--chhhHHHHHHHccchh
Confidence 5555655555555544332211 1 1233445666666654
No 393
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=92.50 E-value=0.55 Score=50.09 Aligned_cols=52 Identities=15% Similarity=0.274 Sum_probs=37.0
Q ss_pred EEEEEEcCCCChHHHHHHHHHhhhhcccCCCceEEEEecCCCCCCHHHHHHHHHHHH
Q 001843 274 QVIALIGKAGSGKTTLARIVYNRVYVKRHFTKRAWVHIPIMSMVEDRDVLADILKQI 330 (1007)
Q Consensus 274 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~l~~il~~l 330 (1007)
.++.|.|.+|+|||++|.+++.+.. ..+=..++|++.. .+..++...++...
T Consensus 14 ~l~lI~G~~G~GKT~~~~~~~~~~~-~~~g~~vly~s~E----~~~~~~~~r~~~~~ 65 (242)
T cd00984 14 DLIIIAARPSMGKTAFALNIAENIA-KKQGKPVLFFSLE----MSKEQLLQRLLASE 65 (242)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHH-HhCCCceEEEeCC----CCHHHHHHHHHHHh
Confidence 7999999999999999999877432 2213456777643 45667777766543
No 394
>PRK13947 shikimate kinase; Provisional
Probab=92.46 E-value=0.096 Score=52.60 Aligned_cols=21 Identities=48% Similarity=0.631 Sum_probs=19.8
Q ss_pred EEEEEcCCCChHHHHHHHHHh
Q 001843 275 VIALIGKAGSGKTTLARIVYN 295 (1007)
Q Consensus 275 vi~I~G~gGiGKTtLa~~v~~ 295 (1007)
-|.|+|++|+||||+|+.+++
T Consensus 3 ~I~l~G~~GsGKst~a~~La~ 23 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVAT 23 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHH
Confidence 489999999999999999998
No 395
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=92.45 E-value=0.13 Score=52.12 Aligned_cols=36 Identities=28% Similarity=0.419 Sum_probs=26.0
Q ss_pred EEEEEcCCCChHHHHHHHHHhhhhcccCCCceEEEEec
Q 001843 275 VIALIGKAGSGKTTLARIVYNRVYVKRHFTKRAWVHIP 312 (1007)
Q Consensus 275 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s 312 (1007)
+|+|.|.+|+||||||+.+.. ........+..++..
T Consensus 1 ii~i~G~sgsGKttla~~l~~--~l~~~~~~~~~i~~D 36 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSN--QLRVNGIGPVVISLD 36 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHH--HHHHcCCCEEEEehh
Confidence 589999999999999999998 443332334445443
No 396
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=92.42 E-value=0.68 Score=48.34 Aligned_cols=23 Identities=22% Similarity=0.372 Sum_probs=21.1
Q ss_pred cEEEEEEcCCCChHHHHHHHHHh
Q 001843 273 TQVIALIGKAGSGKTTLARIVYN 295 (1007)
Q Consensus 273 ~~vi~I~G~gGiGKTtLa~~v~~ 295 (1007)
.+++.|+|..|.||||+.+.+..
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHH
Confidence 38999999999999999999885
No 397
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=92.40 E-value=1.5 Score=46.89 Aligned_cols=82 Identities=20% Similarity=0.135 Sum_probs=45.8
Q ss_pred EEEEEcCCCChHHHHHHHHHhhhhcccCCCceEEEEecCCCCCCHHHHHHHHHHHHhh--hhhh-hccccCHHHHHHHHH
Q 001843 275 VIALIGKAGSGKTTLARIVYNRVYVKRHFTKRAWVHIPIMSMVEDRDVLADILKQIDE--SLLK-VEATLSAEELMWRIT 351 (1007)
Q Consensus 275 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~l~~il~~l~~--~~~~-~~~~~~~~~l~~~l~ 351 (1007)
+|+|.|-.|.||||+|+++.. ..+..-..++.++......++....-..+...... +... .++..+.+.+.+.++
T Consensus 1 IIgItG~SGSGKTTv~~~l~~--~l~~~g~~v~vI~~D~yyr~~r~~~~~~~~~a~~~~~nfdHf~PeAnd~dlL~~~l~ 78 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEH--IFAREGIHPAVVEGDSFHRYERMEMKMAIAEALDAGRNFSHFGPEANLFDLLEELFR 78 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHH--HHHhcCCceEEEeccccccCCchhHHHHHHHHhhcCCCCCCCCcccccHHHHHHHHH
Confidence 589999999999999999887 34332223555654422233333332222222211 1001 024556677777777
Q ss_pred HHcCCCc
Q 001843 352 QALDDST 358 (1007)
Q Consensus 352 ~~L~~kr 358 (1007)
.+.+++.
T Consensus 79 ~L~~g~~ 85 (277)
T cd02029 79 TYGETGR 85 (277)
T ss_pred HHHcCCC
Confidence 7766553
No 398
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=92.37 E-value=0.55 Score=57.55 Aligned_cols=86 Identities=23% Similarity=0.310 Sum_probs=49.4
Q ss_pred EEEEEEcCCCChHHHHHHHHHhhhhcccCCCceEEEEecCCCCCC--HHHHHHHHHHHHhhhhhhhccccCHHHHHHHHH
Q 001843 274 QVIALIGKAGSGKTTLARIVYNRVYVKRHFTKRAWVHIPIMSMVE--DRDVLADILKQIDESLLKVEATLSAEELMWRIT 351 (1007)
Q Consensus 274 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~--~~~~l~~il~~l~~~~~~~~~~~~~~~l~~~l~ 351 (1007)
+|++++|..|+||||.+.+++...........+..++.. .+. ..+-++...+.++.+ .....+..++.+.+.
T Consensus 186 ~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~D---t~RigA~eQL~~~a~~~gvp---v~~~~~~~~l~~al~ 259 (767)
T PRK14723 186 GVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTD---SFRIGALEQLRIYGRILGVP---VHAVKDAADLRFALA 259 (767)
T ss_pred eEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCc---ccchHHHHHHHHHHHhCCCC---ccccCCHHHHHHHHH
Confidence 799999999999999999988742222222345566543 233 344455555555433 112335555555554
Q ss_pred HHcCCCcEEEEEeCcC
Q 001843 352 QALDDSTFLIVMENAE 367 (1007)
Q Consensus 352 ~~L~~kr~LlVlDdv~ 367 (1007)
.++++. +|++|-.-
T Consensus 260 -~~~~~D-~VLIDTAG 273 (767)
T PRK14723 260 -ALGDKH-LVLIDTVG 273 (767)
T ss_pred -HhcCCC-EEEEeCCC
Confidence 344443 66677653
No 399
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=92.37 E-value=0.53 Score=50.51 Aligned_cols=90 Identities=13% Similarity=0.137 Sum_probs=52.4
Q ss_pred EEEEEEcCCCChHHHHHHHHHhhhhc--ccCCCceEEEEecCCCCC-CHHHHHHHHHHHHhhhhhhh-----ccccC---
Q 001843 274 QVIALIGKAGSGKTTLARIVYNRVYV--KRHFTKRAWVHIPIMSMV-EDRDVLADILKQIDESLLKV-----EATLS--- 342 (1007)
Q Consensus 274 ~vi~I~G~gGiGKTtLa~~v~~~~~~--~~~F~~~~wv~~s~~~~~-~~~~~l~~il~~l~~~~~~~-----~~~~~--- 342 (1007)
+-++|.|-.|+|||+|+..+.++..+ +.+-+.++++-++ +.. +..+++.++.+.=... .. .....
T Consensus 70 QR~gIfgg~GvGKt~L~~~i~~~~~~~~~~~~~v~V~~~IG--eR~rev~e~~~~~~~~~~l~--~tv~v~~t~~~~~~~ 145 (276)
T cd01135 70 QKIPIFSGSGLPHNELAAQIARQAGVVGEEENFAVVFAAMG--ITMEDARFFKDDFEETGALE--RVVLFLNLANDPTIE 145 (276)
T ss_pred CEEEeecCCCCChhHHHHHHHHhhhccccCCCCEEEEEEec--cccHHHHHHHHHhhhcCCcc--eEEEEEecCCCCHHH
Confidence 67899999999999999999885331 2234677888877 544 4444554444421111 00 00111
Q ss_pred ---HHHHHHHHHHHc---CCCcEEEEEeCcC
Q 001843 343 ---AEELMWRITQAL---DDSTFLIVMENAE 367 (1007)
Q Consensus 343 ---~~~l~~~l~~~L---~~kr~LlVlDdv~ 367 (1007)
.-...-.+.+++ +++++|+++||+.
T Consensus 146 r~~a~~~a~aiAEyfrd~~g~~VLl~~D~lt 176 (276)
T cd01135 146 RIITPRMALTTAEYLAYEKGKHVLVILTDMT 176 (276)
T ss_pred HHHHHHHHHHHHHHHHhccCCeEEEEEcChh
Confidence 111112233444 3789999999985
No 400
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=92.34 E-value=0.17 Score=48.01 Aligned_cols=32 Identities=28% Similarity=0.479 Sum_probs=25.3
Q ss_pred EEEEEEcCCCChHHHHHHHHHhhhhcccCCCceEEEEec
Q 001843 274 QVIALIGKAGSGKTTLARIVYNRVYVKRHFTKRAWVHIP 312 (1007)
Q Consensus 274 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s 312 (1007)
.=|.|.|.+|+||||+|.+++. .. .| -|+++|
T Consensus 8 PNILvtGTPG~GKstl~~~lae--~~--~~---~~i~is 39 (176)
T KOG3347|consen 8 PNILVTGTPGTGKSTLAERLAE--KT--GL---EYIEIS 39 (176)
T ss_pred CCEEEeCCCCCCchhHHHHHHH--Hh--CC---ceEehh
Confidence 5678999999999999999997 22 22 477777
No 401
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=92.34 E-value=0.11 Score=52.70 Aligned_cols=23 Identities=35% Similarity=0.603 Sum_probs=21.2
Q ss_pred EEEEEEcCCCChHHHHHHHHHhh
Q 001843 274 QVIALIGKAGSGKTTLARIVYNR 296 (1007)
Q Consensus 274 ~vi~I~G~gGiGKTtLa~~v~~~ 296 (1007)
++++|+|+.|+|||||++.++..
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 58999999999999999999883
No 402
>PRK13948 shikimate kinase; Provisional
Probab=92.33 E-value=0.12 Score=52.29 Aligned_cols=24 Identities=25% Similarity=0.379 Sum_probs=22.0
Q ss_pred CcEEEEEEcCCCChHHHHHHHHHh
Q 001843 272 TTQVIALIGKAGSGKTTLARIVYN 295 (1007)
Q Consensus 272 ~~~vi~I~G~gGiGKTtLa~~v~~ 295 (1007)
..+.|.++||.|+||||+++.+++
T Consensus 9 ~~~~I~LiG~~GsGKSTvg~~La~ 32 (182)
T PRK13948 9 PVTWVALAGFMGTGKSRIGWELSR 32 (182)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 348899999999999999999998
No 403
>PRK00889 adenylylsulfate kinase; Provisional
Probab=92.33 E-value=0.17 Score=51.00 Aligned_cols=23 Identities=35% Similarity=0.577 Sum_probs=21.7
Q ss_pred EEEEEEcCCCChHHHHHHHHHhh
Q 001843 274 QVIALIGKAGSGKTTLARIVYNR 296 (1007)
Q Consensus 274 ~vi~I~G~gGiGKTtLa~~v~~~ 296 (1007)
.+|.|+|++|+||||+|+.++..
T Consensus 5 ~~i~~~G~~GsGKST~a~~la~~ 27 (175)
T PRK00889 5 VTVWFTGLSGAGKTTIARALAEK 27 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 79999999999999999999983
No 404
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.27 E-value=0.018 Score=57.58 Aligned_cols=82 Identities=22% Similarity=0.261 Sum_probs=41.4
Q ss_pred CceEEEEEeeecCCCCcCccccCCCCcEEEeecCCcCCC-ceeecCCCCCCCcEEEeccCCCCcceEEc-CCCCccccEe
Q 001843 867 NVVTLTLSQLRLEYDPMPILGRLRQLKILRLFGGSYTGE-EMSCSSGEFPNLLVLKLWKLNRLRQWRIK-EGAMPCLRQL 944 (1007)
Q Consensus 867 ~L~~L~L~~~~l~~~~~~~l~~Lp~L~~L~L~~~~~~~~-~l~~~~~~fp~L~~L~L~~~~~L~~l~~~-~~~~p~L~~L 944 (1007)
.++.++-+++.+....+..+..+++++.|.+.++.+.+. .+..-.+.+|+|+.|+|++|+.+++--.. ...+++|+.|
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L 181 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL 181 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence 466677777776666666666777777777764333221 11111224555555555555544432111 1234555555
Q ss_pred Eeec
Q 001843 945 EIRS 948 (1007)
Q Consensus 945 ~l~~ 948 (1007)
.|.+
T Consensus 182 ~l~~ 185 (221)
T KOG3864|consen 182 HLYD 185 (221)
T ss_pred HhcC
Confidence 5544
No 405
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=92.27 E-value=0.54 Score=52.39 Aligned_cols=83 Identities=19% Similarity=0.199 Sum_probs=50.8
Q ss_pred EEEEEEcCCCChHHHHHHHHHhhhhcccCCCceEEEEecCCCCCCHHHHHHHHHHHHhhhhhhh--ccccCHHHHHHHHH
Q 001843 274 QVIALIGKAGSGKTTLARIVYNRVYVKRHFTKRAWVHIPIMSMVEDRDVLADILKQIDESLLKV--EATLSAEELMWRIT 351 (1007)
Q Consensus 274 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~l~~il~~l~~~~~~~--~~~~~~~~l~~~l~ 351 (1007)
.+|.|-|-+|+|||||..+++. +...+- .+++|+- ..+..++ +--+.+++...... -...+.+...+.+.
T Consensus 94 s~iLIgGdPGIGKSTLLLQva~--~lA~~~-~vLYVsG----EES~~Qi-klRA~RL~~~~~~l~l~aEt~~e~I~~~l~ 165 (456)
T COG1066 94 SVILIGGDPGIGKSTLLLQVAA--RLAKRG-KVLYVSG----EESLQQI-KLRADRLGLPTNNLYLLAETNLEDIIAELE 165 (456)
T ss_pred cEEEEccCCCCCHHHHHHHHHH--HHHhcC-cEEEEeC----CcCHHHH-HHHHHHhCCCccceEEehhcCHHHHHHHHH
Confidence 8999999999999999999999 455444 6777753 3333222 22334444320000 02334444444443
Q ss_pred HHcCCCcEEEEEeCcC
Q 001843 352 QALDDSTFLIVMENAE 367 (1007)
Q Consensus 352 ~~L~~kr~LlVlDdv~ 367 (1007)
+ .++-|+|+|-+.
T Consensus 166 ~---~~p~lvVIDSIQ 178 (456)
T COG1066 166 Q---EKPDLVVIDSIQ 178 (456)
T ss_pred h---cCCCEEEEeccc
Confidence 3 678899999986
No 406
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=92.26 E-value=0.35 Score=55.39 Aligned_cols=84 Identities=15% Similarity=0.192 Sum_probs=49.8
Q ss_pred EEEEEEcCCCChHHHHHHHHHhhhhcccCCCceEEEEecCCCCC-CHHHHHHHHHHHHhhhhhhh-----ccc-------
Q 001843 274 QVIALIGKAGSGKTTLARIVYNRVYVKRHFTKRAWVHIPIMSMV-EDRDVLADILKQIDESLLKV-----EAT------- 340 (1007)
Q Consensus 274 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~-~~~~~l~~il~~l~~~~~~~-----~~~------- 340 (1007)
..++|+|..|+|||||++.+++. . ..+.++.+-++ +.. ...++..+++..-... .. ..+
T Consensus 163 qrigI~G~sG~GKSTLL~~I~~~--~--~~dv~Vi~lIG--ER~rEv~efi~~~l~~~~l~--rtvvv~atsd~p~~~R~ 234 (444)
T PRK08972 163 QRMGLFAGSGVGKSVLLGMMTRG--T--TADVIVVGLVG--ERGREVKEFIEEILGEEGRA--RSVVVAAPADTSPLMRL 234 (444)
T ss_pred CEEEEECCCCCChhHHHHHhccC--C--CCCEEEEEEEc--CChHHHHHHHHHhhccCCcc--cEEEEEECCCCCHHHHH
Confidence 78999999999999999999872 2 22455556565 433 3344555544331111 00 011
Q ss_pred ---cCHHHHHHHHHHHcCCCcEEEEEeCcC
Q 001843 341 ---LSAEELMWRITQALDDSTFLIVMENAE 367 (1007)
Q Consensus 341 ---~~~~~l~~~l~~~L~~kr~LlVlDdv~ 367 (1007)
...-...+.++. +++.+|+++||+-
T Consensus 235 ~a~~~A~tiAEyfrd--~G~~VLl~~DslT 262 (444)
T PRK08972 235 KGCETATTIAEYFRD--QGLNVLLLMDSLT 262 (444)
T ss_pred HHHHHHHHHHHHHHH--cCCCEEEEEcChH
Confidence 111223344443 5899999999985
No 407
>PRK03846 adenylylsulfate kinase; Provisional
Probab=92.25 E-value=0.2 Score=51.73 Aligned_cols=23 Identities=35% Similarity=0.465 Sum_probs=21.8
Q ss_pred cEEEEEEcCCCChHHHHHHHHHh
Q 001843 273 TQVIALIGKAGSGKTTLARIVYN 295 (1007)
Q Consensus 273 ~~vi~I~G~gGiGKTtLa~~v~~ 295 (1007)
..+|+|+|++|.||||||+.+..
T Consensus 24 ~~~i~i~G~~GsGKSTla~~l~~ 46 (198)
T PRK03846 24 GVVLWFTGLSGSGKSTVAGALEE 46 (198)
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 38999999999999999999998
No 408
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=92.23 E-value=0.098 Score=30.40 Aligned_cols=16 Identities=44% Similarity=0.717 Sum_probs=6.4
Q ss_pred CCCEEeecCCcccccc
Q 001843 718 CLATLDVSHTKVQRLP 733 (1007)
Q Consensus 718 ~L~~L~L~~~~l~~lP 733 (1007)
+|++|+|++|+++++|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 4555555555555444
No 409
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=92.17 E-value=0.24 Score=50.96 Aligned_cols=41 Identities=29% Similarity=0.351 Sum_probs=27.5
Q ss_pred EEEEEcCCCChHHHHHHHHHhhhhcccCCCceEEEEecCCCCCC
Q 001843 275 VIALIGKAGSGKTTLARIVYNRVYVKRHFTKRAWVHIPIMSMVE 318 (1007)
Q Consensus 275 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~ 318 (1007)
.|+|.|-||+||||+|...+.. ...++=..++-|+.. .+++
T Consensus 2 kIaI~GKGG~GKTtiaalll~~-l~~~~~~~VLvVDaD--pd~n 42 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLKR-LLSKGGYNVLVVDAD--PDSN 42 (255)
T ss_pred eEEEecCCCccHHHHHHHHHHH-HHhcCCceEEEEeCC--CCCC
Confidence 5899999999999999985552 333331234556655 5554
No 410
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=92.14 E-value=0.44 Score=59.54 Aligned_cols=183 Identities=14% Similarity=0.081 Sum_probs=89.1
Q ss_pred cEEEEEEcCCCChHHHHHHHHHhhhhcc--c------------CCCceEEEEecCCCCCCHHHHHHHHHHHHhhhhhhhc
Q 001843 273 TQVIALIGKAGSGKTTLARIVYNRVYVK--R------------HFTKRAWVHIPIMSMVEDRDVLADILKQIDESLLKVE 338 (1007)
Q Consensus 273 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~--~------------~F~~~~wv~~s~~~~~~~~~~l~~il~~l~~~~~~~~ 338 (1007)
.+++.|.|+.+.||||+.+.+.-..-.. + .|+ .++..++ ...++..-+..+...
T Consensus 327 ~~~~iITGpN~gGKTt~lktigl~~~maq~G~~vpa~~~~~i~~~~-~i~~~ig--~~~si~~~lStfS~~--------- 394 (782)
T PRK00409 327 KTVLVITGPNTGGKTVTLKTLGLAALMAKSGLPIPANEPSEIPVFK-EIFADIG--DEQSIEQSLSTFSGH--------- 394 (782)
T ss_pred ceEEEEECCCCCCcHHHHHHHHHHHHHHHhCCCcccCCCccccccc-eEEEecC--CccchhhchhHHHHH---------
Confidence 3899999999999999999986531110 1 111 2333333 222222211111111
Q ss_pred cccCHHHHHHHHHHHcCCCcEEEEEeCcCcc-Cchhhhhhc-cccCC-CCCCcEEEEEcCCCcccccccCCcceeeecCC
Q 001843 339 ATLSAEELMWRITQALDDSTFLIVMENAEHQ-KSQVWDSFL-GKLCS-FTQCGKIIITTSSTEDFVEPLGAAFSTLHVPG 415 (1007)
Q Consensus 339 ~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~-~~~~~~~l~-~l~~~-~~~gs~IliTTR~~~~va~~~~~~~~~~~l~~ 415 (1007)
.......+ ..+ ..+-|+++|..-.. ++..-..+. .+... ...|+.+|+||-... ++........+.....
T Consensus 395 ----m~~~~~Il-~~~-~~~sLvLlDE~~~GtDp~eg~ala~aile~l~~~~~~vIitTH~~e-l~~~~~~~~~v~~~~~ 467 (782)
T PRK00409 395 ----MTNIVRIL-EKA-DKNSLVLFDELGAGTDPDEGAALAISILEYLRKRGAKIIATTHYKE-LKALMYNREGVENASV 467 (782)
T ss_pred ----HHHHHHHH-HhC-CcCcEEEecCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECChHH-HHHHHhcCCCeEEEEE
Confidence 11112222 222 47789999998621 222222332 21111 034789999999877 6655433211111000
Q ss_pred CCHHHHHHHHHhhhccccccccCCChHHHHHHHHHHHHcCCCchHHHHHHHHhcCCCCChHHHHHHHHHcc
Q 001843 416 LGKNESWELFLKKARIAEDVLQSRSSELIKLKKQILNICDGLPLRVVLLAGLLSTKQPSYEEWSKVIERAN 486 (1007)
Q Consensus 416 L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~g~~L~~~~~~~~~w~~~l~~l~ 486 (1007)
.-+.+......+...+.. -..-|-+|++++ |+|-.|.--|..+.... ...+..++..+.
T Consensus 468 ~~d~~~l~~~Ykl~~G~~---------g~S~a~~iA~~~-Glp~~ii~~A~~~~~~~--~~~~~~li~~l~ 526 (782)
T PRK00409 468 EFDEETLRPTYRLLIGIP---------GKSNAFEIAKRL-GLPENIIEEAKKLIGED--KEKLNELIASLE 526 (782)
T ss_pred EEecCcCcEEEEEeeCCC---------CCcHHHHHHHHh-CcCHHHHHHHHHHHhhh--hhHHHHHHHHHH
Confidence 001111111111111110 134577788877 78888887777776554 445555555543
No 411
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=92.13 E-value=0.12 Score=52.47 Aligned_cols=23 Identities=39% Similarity=0.590 Sum_probs=21.9
Q ss_pred EEEEEEcCCCChHHHHHHHHHhh
Q 001843 274 QVIALIGKAGSGKTTLARIVYNR 296 (1007)
Q Consensus 274 ~vi~I~G~gGiGKTtLa~~v~~~ 296 (1007)
.+|+|-||=|+||||||+.+++.
T Consensus 5 ~~IvI~G~IG~GKSTLa~~La~~ 27 (216)
T COG1428 5 MVIVIEGMIGAGKSTLAQALAEH 27 (216)
T ss_pred cEEEEecccccCHHHHHHHHHHH
Confidence 89999999999999999999993
No 412
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=92.12 E-value=0.1 Score=53.13 Aligned_cols=21 Identities=33% Similarity=0.536 Sum_probs=19.7
Q ss_pred EEEEEcCCCChHHHHHHHHHh
Q 001843 275 VIALIGKAGSGKTTLARIVYN 295 (1007)
Q Consensus 275 vi~I~G~gGiGKTtLa~~v~~ 295 (1007)
||.|+|++|+||||+|+.++.
T Consensus 1 ~i~i~G~pGsGKst~a~~la~ 21 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVE 21 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999988
No 413
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=92.11 E-value=1.5 Score=52.19 Aligned_cols=23 Identities=22% Similarity=0.537 Sum_probs=21.0
Q ss_pred EEEEEEcCCCChHHHHHHHHHhh
Q 001843 274 QVIALIGKAGSGKTTLARIVYNR 296 (1007)
Q Consensus 274 ~vi~I~G~gGiGKTtLa~~v~~~ 296 (1007)
.-|.|.|..|+||+++|+.+++.
T Consensus 236 ~pVLI~GE~GTGKe~lA~~IH~~ 258 (526)
T TIGR02329 236 ATVLILGESGTGKELVAQAIHQL 258 (526)
T ss_pred CcEEEECCCCcCHHHHHHHHHHh
Confidence 57889999999999999999983
No 414
>PRK12678 transcription termination factor Rho; Provisional
Probab=92.09 E-value=0.7 Score=54.10 Aligned_cols=89 Identities=15% Similarity=0.150 Sum_probs=46.9
Q ss_pred EEEEEEcCCCChHHHHHHHHHhhhhccc-CCCceEEE-EecCCCCCCHHHHHHHHHHHHhhhhhhhcc----ccCHHHHH
Q 001843 274 QVIALIGKAGSGKTTLARIVYNRVYVKR-HFTKRAWV-HIPIMSMVEDRDVLADILKQIDESLLKVEA----TLSAEELM 347 (1007)
Q Consensus 274 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~-~F~~~~wv-~~s~~~~~~~~~~l~~il~~l~~~~~~~~~----~~~~~~l~ 347 (1007)
+-..|+|.+|+|||||++.+++ .+.. +-++.++| -|. .....+.++.+.+-.++-.. .... ......+.
T Consensus 417 QR~LIvgpp~aGKTtLL~~IAn--~i~~n~~~~~~ivvLIg-ERpeEVtdm~rsVkgeVVas--T~D~p~~~~~~~a~~a 491 (672)
T PRK12678 417 QRGLIVSPPKAGKTTILQNIAN--AITTNNPECHLMVVLVD-ERPEEVTDMQRSVKGEVIAS--TFDRPPSDHTTVAELA 491 (672)
T ss_pred CEeEEeCCCCCCHHHHHHHHHH--HHhhcCCCeEEEEEEEe-CchhhHHHHHHhccceEEEE--CCCCCHHHHHHHHHHH
Confidence 6779999999999999999999 4433 22444333 344 12223333332221111110 0000 01111122
Q ss_pred HHHHHHc--CCCcEEEEEeCcC
Q 001843 348 WRITQAL--DDSTFLIVMENAE 367 (1007)
Q Consensus 348 ~~l~~~L--~~kr~LlVlDdv~ 367 (1007)
-.+-+++ .++.+||++|++-
T Consensus 492 i~~Ae~fre~G~dVlillDSlT 513 (672)
T PRK12678 492 IERAKRLVELGKDVVVLLDSIT 513 (672)
T ss_pred HHHHHHHHHcCCCEEEEEeCch
Confidence 2233344 6899999999985
No 415
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=92.09 E-value=0.1 Score=53.91 Aligned_cols=21 Identities=43% Similarity=0.714 Sum_probs=19.8
Q ss_pred EEEEEcCCCChHHHHHHHHHh
Q 001843 275 VIALIGKAGSGKTTLARIVYN 295 (1007)
Q Consensus 275 vi~I~G~gGiGKTtLa~~v~~ 295 (1007)
+|+|.|..|+||||||+.+..
T Consensus 1 iigi~G~~GsGKSTl~~~l~~ 21 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIE 21 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999988
No 416
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=92.09 E-value=0.28 Score=53.25 Aligned_cols=22 Identities=32% Similarity=0.616 Sum_probs=20.2
Q ss_pred EEEEEEcCCCChHHHHHHHHHh
Q 001843 274 QVIALIGKAGSGKTTLARIVYN 295 (1007)
Q Consensus 274 ~vi~I~G~gGiGKTtLa~~v~~ 295 (1007)
+-+.++|..|+|||++++....
T Consensus 34 ~pvLl~G~~GtGKT~li~~~l~ 55 (272)
T PF12775_consen 34 RPVLLVGPSGTGKTSLIQNFLS 55 (272)
T ss_dssp EEEEEESSTTSSHHHHHHHHHH
T ss_pred CcEEEECCCCCchhHHHHhhhc
Confidence 6779999999999999999886
No 417
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=92.08 E-value=0.46 Score=51.43 Aligned_cols=29 Identities=34% Similarity=0.418 Sum_probs=24.6
Q ss_pred cEEEEEEcCCCChHHHHHHHHHhhhhcccCC
Q 001843 273 TQVIALIGKAGSGKTTLARIVYNRVYVKRHF 303 (1007)
Q Consensus 273 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F 303 (1007)
..+|.|+|.+|.|||||...+.+ ......
T Consensus 104 ~~~v~l~G~pGsGKTTLl~~l~~--~l~~~~ 132 (290)
T PRK10463 104 QLVLNLVSSPGSGKTTLLTETLM--RLKDSV 132 (290)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH--HhccCC
Confidence 38999999999999999999998 444444
No 418
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=91.98 E-value=0.76 Score=45.85 Aligned_cols=57 Identities=11% Similarity=0.140 Sum_probs=36.8
Q ss_pred HHHHHHHcCCCcEEEEEeC----cCccCchhhhhhccccCCCCCCcEEEEEcCCCcccccccCC
Q 001843 347 MWRITQALDDSTFLIVMEN----AEHQKSQVWDSFLGKLCSFTQCGKIIITTSSTEDFVEPLGA 406 (1007)
Q Consensus 347 ~~~l~~~L~~kr~LlVlDd----v~~~~~~~~~~l~~l~~~~~~gs~IliTTR~~~~va~~~~~ 406 (1007)
.-.|.+.+-+++-+|+=|. ++ ..-.|+-+.-|-.-...|+.||++|-+.. +.+.+..
T Consensus 145 RvaIARAiV~~P~vLlADEPTGNLD--p~~s~~im~lfeeinr~GtTVl~ATHd~~-lv~~~~~ 205 (223)
T COG2884 145 RVAIARAIVNQPAVLLADEPTGNLD--PDLSWEIMRLFEEINRLGTTVLMATHDLE-LVNRMRH 205 (223)
T ss_pred HHHHHHHHccCCCeEeecCCCCCCC--hHHHHHHHHHHHHHhhcCcEEEEEeccHH-HHHhccC
Confidence 3345666678888899884 44 44456554433221156999999999988 6655543
No 419
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=91.98 E-value=0.85 Score=46.17 Aligned_cols=122 Identities=17% Similarity=0.111 Sum_probs=62.2
Q ss_pred EEEEEEcCCCChHHHHHHHHHhhhhcccCCCceEEEEecCCC-CCCHHHHHHHHHHHH-----hhh--h---hhhccccC
Q 001843 274 QVIALIGKAGSGKTTLARIVYNRVYVKRHFTKRAWVHIPIMS-MVEDRDVLADILKQI-----DES--L---LKVEATLS 342 (1007)
Q Consensus 274 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~-~~~~~~~l~~il~~l-----~~~--~---~~~~~~~~ 342 (1007)
..|-|+|-.|-||||.|..++-. .-.+=-.+..+-+-... ...-...+..+- .+ +.. . ........
T Consensus 23 g~v~v~~g~GkGKtt~a~g~a~r--a~g~G~~V~ivQFlKg~~~~GE~~~l~~l~-~v~~~~~g~~~~~~~~~~~e~~~~ 99 (191)
T PRK05986 23 GLLIVHTGNGKGKSTAAFGMALR--AVGHGKKVGVVQFIKGAWSTGERNLLEFGG-GVEFHVMGTGFTWETQDRERDIAA 99 (191)
T ss_pred CeEEEECCCCCChHHHHHHHHHH--HHHCCCeEEEEEEecCCCccCHHHHHhcCC-CcEEEECCCCCcccCCCcHHHHHH
Confidence 68899999999999999988773 32222223333322111 223333333210 00 000 0 00001122
Q ss_pred HHHHHHHHHHHcCCCcE-EEEEeCcCcc---CchhhhhhccccCCCCCCcEEEEEcCCCc
Q 001843 343 AEELMWRITQALDDSTF-LIVMENAEHQ---KSQVWDSFLGKLCSFTQCGKIIITTSSTE 398 (1007)
Q Consensus 343 ~~~l~~~l~~~L~~kr~-LlVlDdv~~~---~~~~~~~l~~l~~~~~~gs~IliTTR~~~ 398 (1007)
.....+..++.+...+| |||||.+-.. ..-..+++..+...-..+..||+|-|+..
T Consensus 100 ~~~~~~~a~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~p 159 (191)
T PRK05986 100 AREGWEEAKRMLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGAP 159 (191)
T ss_pred HHHHHHHHHHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCCC
Confidence 33344555666666666 9999998411 12223344422222145578999999875
No 420
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=91.94 E-value=0.11 Score=52.78 Aligned_cols=22 Identities=36% Similarity=0.614 Sum_probs=20.3
Q ss_pred EEEEEcCCCChHHHHHHHHHhh
Q 001843 275 VIALIGKAGSGKTTLARIVYNR 296 (1007)
Q Consensus 275 vi~I~G~gGiGKTtLa~~v~~~ 296 (1007)
+|+|.|.+|+||||+|+.++..
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~ 22 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRI 22 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999983
No 421
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=91.93 E-value=0.69 Score=46.18 Aligned_cols=114 Identities=11% Similarity=0.066 Sum_probs=58.1
Q ss_pred EEEEEEcCCCChHHHHHHHHHhhhhcccCCCceEEE-------EecCCCCCCH--HHHHHHHHHHHhhhhhhhccccCHH
Q 001843 274 QVIALIGKAGSGKTTLARIVYNRVYVKRHFTKRAWV-------HIPIMSMVED--RDVLADILKQIDESLLKVEATLSAE 344 (1007)
Q Consensus 274 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv-------~~s~~~~~~~--~~~l~~il~~l~~~~~~~~~~~~~~ 344 (1007)
.+++|+|..|.|||||++.++.-.. .....+++ .+. +.... ..+...+... . ...-...+
T Consensus 28 e~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~~~~~i~~~~--q~~~~~~~tv~~nl~~~---~---~~~LS~G~ 96 (166)
T cd03223 28 DRLLITGPSGTGKSSLFRALAGLWP---WGSGRIGMPEGEDLLFLP--QRPYLPLGTLREQLIYP---W---DDVLSGGE 96 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC---CCCceEEECCCceEEEEC--CCCccccccHHHHhhcc---C---CCCCCHHH
Confidence 7999999999999999999988321 11222222 122 22211 1222222110 0 01111122
Q ss_pred HHHHHHHHHcCCCcEEEEEeCcCc-cCchhhhhhc-cccCCCCCCcEEEEEcCCCccccc
Q 001843 345 ELMWRITQALDDSTFLIVMENAEH-QKSQVWDSFL-GKLCSFTQCGKIIITTSSTEDFVE 402 (1007)
Q Consensus 345 ~l~~~l~~~L~~kr~LlVlDdv~~-~~~~~~~~l~-~l~~~~~~gs~IliTTR~~~~va~ 402 (1007)
...-.+.+.+-.++=++++|+--. -|......+. .+... +..||++|.+.. ...
T Consensus 97 ~~rv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsh~~~-~~~ 152 (166)
T cd03223 97 QQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL---GITVISVGHRPS-LWK 152 (166)
T ss_pred HHHHHHHHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHh---CCEEEEEeCChh-HHh
Confidence 222334455556777889998642 1333334444 22222 356788887766 554
No 422
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=91.91 E-value=0.17 Score=50.47 Aligned_cols=23 Identities=30% Similarity=0.476 Sum_probs=21.6
Q ss_pred EEEEEEcCCCChHHHHHHHHHhh
Q 001843 274 QVIALIGKAGSGKTTLARIVYNR 296 (1007)
Q Consensus 274 ~vi~I~G~gGiGKTtLa~~v~~~ 296 (1007)
.+++|+|..|+|||||++.+...
T Consensus 7 ~ii~ivG~sgsGKTTLi~~li~~ 29 (173)
T PRK10751 7 PLLAIAAWSGTGKTTLLKKLIPA 29 (173)
T ss_pred eEEEEECCCCChHHHHHHHHHHH
Confidence 79999999999999999999983
No 423
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=91.91 E-value=0.22 Score=48.09 Aligned_cols=37 Identities=35% Similarity=0.517 Sum_probs=27.3
Q ss_pred EEEEEEcCCCChHHHHHHHHHhhhhcc-cCCCceEEEEec
Q 001843 274 QVIALIGKAGSGKTTLARIVYNRVYVK-RHFTKRAWVHIP 312 (1007)
Q Consensus 274 ~vi~I~G~gGiGKTtLa~~v~~~~~~~-~~F~~~~wv~~s 312 (1007)
.+|.|+|..|+|||||++.+.+. .. +.+...+..+..
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~--l~~~g~~v~~ik~~~ 38 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINE--LKRRGYRVAVIKHTD 38 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHH--HHHTT--EEEEEE-S
T ss_pred CEEEEECCCCCCHHHHHHHHHHH--HhHcCCceEEEEEcc
Confidence 47999999999999999999994 44 556666666655
No 424
>PRK13949 shikimate kinase; Provisional
Probab=91.90 E-value=0.13 Score=51.59 Aligned_cols=22 Identities=41% Similarity=0.594 Sum_probs=20.4
Q ss_pred EEEEEEcCCCChHHHHHHHHHh
Q 001843 274 QVIALIGKAGSGKTTLARIVYN 295 (1007)
Q Consensus 274 ~vi~I~G~gGiGKTtLa~~v~~ 295 (1007)
+-|.|+|++|.||||+++.++.
T Consensus 2 ~~I~liG~~GsGKstl~~~La~ 23 (169)
T PRK13949 2 ARIFLVGYMGAGKTTLGKALAR 23 (169)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4589999999999999999998
No 425
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=91.90 E-value=0.68 Score=43.10 Aligned_cols=34 Identities=32% Similarity=0.462 Sum_probs=24.9
Q ss_pred EEEEcCCCChHHHHHHHHHhhhhcccCCCceEEEEe
Q 001843 276 IALIGKAGSGKTTLARIVYNRVYVKRHFTKRAWVHI 311 (1007)
Q Consensus 276 i~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~ 311 (1007)
|.+.|.||+||||++..++. ...+.-..++-++.
T Consensus 2 i~~~GkgG~GKTt~a~~la~--~l~~~g~~V~~id~ 35 (116)
T cd02034 2 IAITGKGGVGKTTIAALLAR--YLAEKGKPVLAIDA 35 (116)
T ss_pred EEEECCCCCCHHHHHHHHHH--HHHHCCCcEEEEEC
Confidence 68999999999999999988 44443333444443
No 426
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=91.90 E-value=0.16 Score=53.82 Aligned_cols=25 Identities=28% Similarity=0.570 Sum_probs=22.7
Q ss_pred CCcEEEEEEcCCCChHHHHHHHHHh
Q 001843 271 TTTQVIALIGKAGSGKTTLARIVYN 295 (1007)
Q Consensus 271 ~~~~vi~I~G~gGiGKTtLa~~v~~ 295 (1007)
..+.+|+|.|..|.|||||++.+..
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~ 55 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEA 55 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3448999999999999999999998
No 427
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=91.89 E-value=2.2 Score=46.36 Aligned_cols=60 Identities=17% Similarity=0.246 Sum_probs=41.5
Q ss_pred CCcEEEEEeCcCccCchhhhhhc-cccCCCCCCcEEEEEcCCCcccccccCCcceeeecCCC
Q 001843 356 DSTFLIVMENAEHQKSQVWDSFL-GKLCSFTQCGKIIITTSSTEDFVEPLGAAFSTLHVPGL 416 (1007)
Q Consensus 356 ~kr~LlVlDdv~~~~~~~~~~l~-~l~~~~~~gs~IliTTR~~~~va~~~~~~~~~~~l~~L 416 (1007)
++.=++|+|+++.-+.+.++.+. .+-.. ..++.+|++|.+...+.....+.+..+.+.++
T Consensus 94 ~~~kv~ii~~ad~mt~~AaNaLLK~LEEP-p~~~~fiL~~~~~~~ll~TI~SRcq~~~~~~~ 154 (290)
T PRK05917 94 SPYKIYIIHEADRMTLDAISAFLKVLEDP-PQHGVIILTSAKPQRLPPTIRSRSLSIHIPME 154 (290)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHhhcC-CCCeEEEEEeCChhhCcHHHHhcceEEEccch
Confidence 45558899999877888888888 43333 55667777766655476665655577777765
No 428
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=91.87 E-value=0.11 Score=50.38 Aligned_cols=21 Identities=48% Similarity=0.787 Sum_probs=19.9
Q ss_pred EEEEEcCCCChHHHHHHHHHh
Q 001843 275 VIALIGKAGSGKTTLARIVYN 295 (1007)
Q Consensus 275 vi~I~G~gGiGKTtLa~~v~~ 295 (1007)
+|.|+|.+|+||||+|+.+..
T Consensus 1 ~I~i~G~~GsGKst~a~~la~ 21 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAK 21 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999998
No 429
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=91.78 E-value=0.62 Score=54.01 Aligned_cols=89 Identities=18% Similarity=0.193 Sum_probs=52.5
Q ss_pred EEEEEEcCCCChHHHHHHHHHhhhhcccCCCceEEEEecCCCC-CCHHHHHHHHHHHHhhhhhhh-----ccccC-----
Q 001843 274 QVIALIGKAGSGKTTLARIVYNRVYVKRHFTKRAWVHIPIMSM-VEDRDVLADILKQIDESLLKV-----EATLS----- 342 (1007)
Q Consensus 274 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~-~~~~~~l~~il~~l~~~~~~~-----~~~~~----- 342 (1007)
+-++|+|..|+|||||+..+++... +.+-+.++++-++ +. -...+++.++...-... +. ..+..
T Consensus 144 QR~gIfa~~G~GKt~Ll~~~~~~~~-~~~~dv~V~~liG--ER~rEv~ef~~~~~~~~~l~--rsvvv~atsd~~~~~R~ 218 (461)
T PRK12597 144 GKTGLFGGAGVGKTVLMMELIFNIS-KQHSGSSVFAGVG--ERSREGHELYHEMKESGVLD--KTVMVYGQMNEPPGARM 218 (461)
T ss_pred CEEEeecCCCCChhHHHHHHHHHHH-hhCCCEEEEEcCC--cchHHHHHHHHHHHhcCCcc--eeEEEecCCCCCHHHHH
Confidence 6789999999999999999888422 2345677777665 33 34445555554321111 00 01111
Q ss_pred -HHHHHHHHHHHc---CCCcEEEEEeCcC
Q 001843 343 -AEELMWRITQAL---DDSTFLIVMENAE 367 (1007)
Q Consensus 343 -~~~l~~~l~~~L---~~kr~LlVlDdv~ 367 (1007)
.....-.+.+++ +++.+|+++||+-
T Consensus 219 ~a~~~a~tiAEyfrd~~G~~VLl~~DslT 247 (461)
T PRK12597 219 RVVLTGLTIAEYLRDEEKEDVLLFIDNIF 247 (461)
T ss_pred HHHHHHHHHHHHHHHhcCCceEEEeccch
Confidence 111222334444 3799999999994
No 430
>PRK06217 hypothetical protein; Validated
Probab=91.75 E-value=0.13 Score=52.41 Aligned_cols=23 Identities=39% Similarity=0.559 Sum_probs=20.9
Q ss_pred EEEEEEcCCCChHHHHHHHHHhh
Q 001843 274 QVIALIGKAGSGKTTLARIVYNR 296 (1007)
Q Consensus 274 ~vi~I~G~gGiGKTtLa~~v~~~ 296 (1007)
..|.|.|.+|.||||+|+++...
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~~~ 24 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALAER 24 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 45899999999999999999984
No 431
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=91.73 E-value=0.16 Score=49.32 Aligned_cols=23 Identities=35% Similarity=0.637 Sum_probs=21.3
Q ss_pred cEEEEEEcCCCChHHHHHHHHHh
Q 001843 273 TQVIALIGKAGSGKTTLARIVYN 295 (1007)
Q Consensus 273 ~~vi~I~G~gGiGKTtLa~~v~~ 295 (1007)
.++++|+|.+|+||||+.+.+-.
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~ 26 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALK 26 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHH
Confidence 48999999999999999998877
No 432
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=91.73 E-value=0.38 Score=53.59 Aligned_cols=36 Identities=28% Similarity=0.332 Sum_probs=24.7
Q ss_pred EEEEcCCCChHHHHHHHHHhhhhcccCCCceEEEEec
Q 001843 276 IALIGKAGSGKTTLARIVYNRVYVKRHFTKRAWVHIP 312 (1007)
Q Consensus 276 i~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s 312 (1007)
+.+.|++|.||||+++.+.+.-.....+ .+.+++..
T Consensus 2 ~~l~Gl~GaGKST~~~~l~~~l~~~~g~-~v~~~~~D 37 (340)
T TIGR03575 2 CVLCGLPAAGKSTLARSLSATLRRERGW-AVAVITYD 37 (340)
T ss_pred eEEECCCCCCHHHHHHHHHHHHHhccCC-eEEEEccc
Confidence 5789999999999999999832212222 34555543
No 433
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=91.71 E-value=1.1 Score=53.20 Aligned_cols=23 Identities=22% Similarity=0.452 Sum_probs=21.2
Q ss_pred EEEEEEcCCCChHHHHHHHHHhh
Q 001843 274 QVIALIGKAGSGKTTLARIVYNR 296 (1007)
Q Consensus 274 ~vi~I~G~gGiGKTtLa~~v~~~ 296 (1007)
.-|.|.|..|+||+++|+.+++.
T Consensus 243 ~pVLI~GE~GTGKe~~A~~IH~~ 265 (538)
T PRK15424 243 AAVLIQGETGTGKELAAQAIHRE 265 (538)
T ss_pred CcEEEECCCCCCHHHHHHHHHHh
Confidence 57889999999999999999984
No 434
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=91.70 E-value=0.94 Score=52.97 Aligned_cols=37 Identities=27% Similarity=0.300 Sum_probs=28.6
Q ss_pred EEEEEEcCCCChHHHHHHHHHhhhhcccCCCceEEEEec
Q 001843 274 QVIALIGKAGSGKTTLARIVYNRVYVKRHFTKRAWVHIP 312 (1007)
Q Consensus 274 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s 312 (1007)
.++.|.|.+|+|||||+.+++.. ....-..++|++..
T Consensus 95 svilI~G~pGsGKTTL~lq~a~~--~a~~g~kvlYvs~E 131 (454)
T TIGR00416 95 SLILIGGDPGIGKSTLLLQVACQ--LAKNQMKVLYVSGE 131 (454)
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH--HHhcCCcEEEEECc
Confidence 89999999999999999999774 32222357788654
No 435
>PTZ00185 ATPase alpha subunit; Provisional
Probab=91.70 E-value=0.71 Score=53.43 Aligned_cols=89 Identities=17% Similarity=0.210 Sum_probs=52.9
Q ss_pred EEEEEEcCCCChHHHHH-HHHHhhhhc-----ccCCCceEEEEecCCCCCCHHHHHHHHHHHHhhhhhhh-------c--
Q 001843 274 QVIALIGKAGSGKTTLA-RIVYNRVYV-----KRHFTKRAWVHIPIMSMVEDRDVLADILKQIDESLLKV-------E-- 338 (1007)
Q Consensus 274 ~vi~I~G~gGiGKTtLa-~~v~~~~~~-----~~~F~~~~wv~~s~~~~~~~~~~l~~il~~l~~~~~~~-------~-- 338 (1007)
+-++|.|-.|+|||+|| -.+.|...+ .++-+.++++.++ +..+...-+.+.+++-+.- ... .
T Consensus 190 QR~lIfGd~GtGKTtLAld~IinQ~~~~~~~~~~~~~v~VyvaIG--eR~rEV~ei~~~L~e~GaL-~~TvVV~AtAdep 266 (574)
T PTZ00185 190 QRELIVGDRQTGKTSIAVSTIINQVRINQQILSKNAVISIYVSIG--QRCSNVARIHRLLRSYGAL-RYTTVMAATAAEP 266 (574)
T ss_pred CEEEeecCCCCChHHHHHHHHHhhhhhccccccCCCCEEEEEEec--cchHHHHHHHHHHHhcCCc-cceEEEEECCCCC
Confidence 67899999999999997 556774322 1234567888887 6654444344444443311 000 0
Q ss_pred ------cccCHHHHHHHHHHHcCCCcEEEEEeCcC
Q 001843 339 ------ATLSAEELMWRITQALDDSTFLIVMENAE 367 (1007)
Q Consensus 339 ------~~~~~~~l~~~l~~~L~~kr~LlVlDdv~ 367 (1007)
.....-...+.++. +++.+|||+||+.
T Consensus 267 ~~~r~~Apy~a~tiAEYFrd--~GkdVLiv~DDLT 299 (574)
T PTZ00185 267 AGLQYLAPYSGVTMGEYFMN--RGRHCLCVYDDLS 299 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHH--cCCCEEEEEcCch
Confidence 11122333444443 5899999999995
No 436
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=91.68 E-value=0.17 Score=55.28 Aligned_cols=37 Identities=27% Similarity=0.269 Sum_probs=25.7
Q ss_pred EEEEEEcCCCChHHHHHHHHHhhhhcccCCCceEEEEec
Q 001843 274 QVIALIGKAGSGKTTLARIVYNRVYVKRHFTKRAWVHIP 312 (1007)
Q Consensus 274 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s 312 (1007)
+.|+|+|-||+||||+|..++.- ....=..++-|+..
T Consensus 1 ~~ia~~gKGGVGKTT~a~nLA~~--La~~G~~VlliD~D 37 (275)
T TIGR01287 1 RQIAIYGKGGIGKSTTTQNIAAA--LAEMGKKVMIVGCD 37 (275)
T ss_pred CeeEEeCCCcCcHHHHHHHHHHH--HHHCCCeEEEEeCC
Confidence 47899999999999999998873 32221234445544
No 437
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=91.66 E-value=0.19 Score=51.17 Aligned_cols=36 Identities=31% Similarity=0.433 Sum_probs=29.6
Q ss_pred EEEEEEcCCCChHHHHHHHHHhhhhcccCCCceEEEEe
Q 001843 274 QVIALIGKAGSGKTTLARIVYNRVYVKRHFTKRAWVHI 311 (1007)
Q Consensus 274 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~ 311 (1007)
++|.|+|+.|+|||||++++.. ....+|..+++.+-
T Consensus 3 r~ivl~Gpsg~GK~~l~~~L~~--~~~~~~~~~v~~TT 38 (183)
T PF00625_consen 3 RPIVLVGPSGSGKSTLAKRLIQ--EFPDKFGRVVSHTT 38 (183)
T ss_dssp SEEEEESSTTSSHHHHHHHHHH--HSTTTEEEEEEEES
T ss_pred CEEEEECCCCCCHHHHHHHHHH--hcccccccceeecc
Confidence 7999999999999999999999 56667765555543
No 438
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=91.59 E-value=1.5 Score=52.17 Aligned_cols=26 Identities=35% Similarity=0.502 Sum_probs=22.9
Q ss_pred cEEEEEEcCCCChHHHHHHHHHhhhh
Q 001843 273 TQVIALIGKAGSGKTTLARIVYNRVY 298 (1007)
Q Consensus 273 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 298 (1007)
++-+..+|++|.|||.||++++....
T Consensus 183 PkGvlLvGpPGTGKTLLAkAvAgEA~ 208 (596)
T COG0465 183 PKGVLLVGPPGTGKTLLAKAVAGEAG 208 (596)
T ss_pred ccceeEecCCCCCcHHHHHHHhcccC
Confidence 47889999999999999999999533
No 439
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=91.59 E-value=0.4 Score=55.04 Aligned_cols=57 Identities=11% Similarity=0.104 Sum_probs=34.5
Q ss_pred HHHHHHHcCCCcEEEEEeCcCcc-Cchhhhhhc-cccCCCCCCcEEEEEcCCCcccccccCC
Q 001843 347 MWRITQALDDSTFLIVMENAEHQ-KSQVWDSFL-GKLCSFTQCGKIIITTSSTEDFVEPLGA 406 (1007)
Q Consensus 347 ~~~l~~~L~~kr~LlVlDdv~~~-~~~~~~~l~-~l~~~~~~gs~IliTTR~~~~va~~~~~ 406 (1007)
...|.+.|-.++.|+.||+-.+. |.+...-+. .+-.. ..+ .++|++|.++ ..+.+++
T Consensus 229 R~aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~-d~~-~lVi~sh~QD-fln~vCT 287 (614)
T KOG0927|consen 229 RAALARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKY-DRI-ILVIVSHSQD-FLNGVCT 287 (614)
T ss_pred HHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHhc-cCc-eEEEEecchh-hhhhHhh
Confidence 34455556678999999987521 222222222 22222 223 6889999998 7777666
No 440
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=91.58 E-value=0.13 Score=50.42 Aligned_cols=22 Identities=36% Similarity=0.750 Sum_probs=19.8
Q ss_pred EEEEEcCCCChHHHHHHHHHhh
Q 001843 275 VIALIGKAGSGKTTLARIVYNR 296 (1007)
Q Consensus 275 vi~I~G~gGiGKTtLa~~v~~~ 296 (1007)
++.|.|++|+||||+|+.+...
T Consensus 1 li~l~G~~GsGKST~a~~l~~~ 22 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAER 22 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhh
Confidence 4789999999999999999883
No 441
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=91.55 E-value=0.62 Score=51.56 Aligned_cols=87 Identities=16% Similarity=0.179 Sum_probs=48.5
Q ss_pred EEEEEEcCCCChHHHHHHHHHhhhhcccCCCceEEEEecCCCCCCHHHHHHHHHHHHhhhh-----hhhc--------cc
Q 001843 274 QVIALIGKAGSGKTTLARIVYNRVYVKRHFTKRAWVHIPIMSMVEDRDVLADILKQIDESL-----LKVE--------AT 340 (1007)
Q Consensus 274 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~l~~il~~l~~~~-----~~~~--------~~ 340 (1007)
..++|+|..|.|||||.+.+++. .. -+..+...+. .+..+..++....+..-...- ...+ ..
T Consensus 70 qri~I~G~sG~GKTtLl~~Ia~~--~~--~~~~vi~~iG-er~~ev~~~~~~~~~~~~l~rtvvv~~t~d~~~~~r~~~~ 144 (326)
T cd01136 70 QRLGIFAGSGVGKSTLLGMIARG--TT--ADVNVIALIG-ERGREVREFIEKDLGEEGLKRSVVVVATSDESPLLRVKAA 144 (326)
T ss_pred cEEEEECCCCCChHHHHHHHhCC--CC--CCEEEEEEEe-cCCccHHHHHHHHHhcCccceEEEEEcCCCCCHHHHHHHH
Confidence 78899999999999999999883 22 1233333333 133445555554444322110 0000 01
Q ss_pred cCHHHHHHHHHHHcCCCcEEEEEeCcC
Q 001843 341 LSAEELMWRITQALDDSTFLIVMENAE 367 (1007)
Q Consensus 341 ~~~~~l~~~l~~~L~~kr~LlVlDdv~ 367 (1007)
...-...+.+++ +++.+|+++||+-
T Consensus 145 ~~a~~~AEyfr~--~g~~Vll~~Dslt 169 (326)
T cd01136 145 YTATAIAEYFRD--QGKDVLLLMDSLT 169 (326)
T ss_pred HHHHHHHHHHHH--cCCCeEEEeccch
Confidence 112223334443 5899999999985
No 442
>PRK05439 pantothenate kinase; Provisional
Probab=91.54 E-value=0.6 Score=51.31 Aligned_cols=81 Identities=16% Similarity=0.252 Sum_probs=45.6
Q ss_pred CCcEEEEEEcCCCChHHHHHHHHHhhhhcccC--CCceEEEEecCCCCCCHHHHHHHHHHHHhhhhhhhccccCHHHHHH
Q 001843 271 TTTQVIALIGKAGSGKTTLARIVYNRVYVKRH--FTKRAWVHIPIMSMVEDRDVLADILKQIDESLLKVEATLSAEELMW 348 (1007)
Q Consensus 271 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~--F~~~~wv~~s~~~~~~~~~~l~~il~~l~~~~~~~~~~~~~~~l~~ 348 (1007)
+.+-+|+|.|.+|+||||+|+.+.. ..... -..+.-++.. .-+...+.+.. ..+... ...+...+.+.+..
T Consensus 84 ~~~~iIgIaG~~gsGKSTla~~L~~--~l~~~~~~~~v~vi~~D--dFy~~~~~l~~--~~l~~~-kg~Pes~D~~~l~~ 156 (311)
T PRK05439 84 KVPFIIGIAGSVAVGKSTTARLLQA--LLSRWPEHPKVELVTTD--GFLYPNAVLEE--RGLMKR-KGFPESYDMRALLR 156 (311)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH--HHHhhCCCCceEEEecc--ccccCHHHHhh--hhcccc-CCCcccccHHHHHH
Confidence 3448999999999999999999887 44332 1234455544 22222222211 011000 01234556777777
Q ss_pred HHHHHcCCCc
Q 001843 349 RITQALDDST 358 (1007)
Q Consensus 349 ~l~~~L~~kr 358 (1007)
.+.....++.
T Consensus 157 ~L~~Lk~G~~ 166 (311)
T PRK05439 157 FLSDVKSGKP 166 (311)
T ss_pred HHHHHHcCCC
Confidence 7776666665
No 443
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=91.53 E-value=0.14 Score=51.93 Aligned_cols=22 Identities=32% Similarity=0.614 Sum_probs=21.1
Q ss_pred EEEEEEcCCCChHHHHHHHHHh
Q 001843 274 QVIALIGKAGSGKTTLARIVYN 295 (1007)
Q Consensus 274 ~vi~I~G~gGiGKTtLa~~v~~ 295 (1007)
++|+|+|+.|+||||||+.+++
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~ 23 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLE 23 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHc
Confidence 6899999999999999999998
No 444
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=91.51 E-value=0.86 Score=53.19 Aligned_cols=39 Identities=31% Similarity=0.382 Sum_probs=28.0
Q ss_pred EEEEEEcCCCChHHHHHHHHHhhhhcccCCCceEEEEec
Q 001843 274 QVIALIGKAGSGKTTLARIVYNRVYVKRHFTKRAWVHIP 312 (1007)
Q Consensus 274 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s 312 (1007)
+|++++|..|+||||++.+++.....+..-..+..++..
T Consensus 257 ~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~D 295 (484)
T PRK06995 257 GVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTD 295 (484)
T ss_pred cEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCC
Confidence 799999999999999999999843222222245556543
No 445
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=91.50 E-value=0.36 Score=49.08 Aligned_cols=36 Identities=25% Similarity=0.210 Sum_probs=26.8
Q ss_pred EEEEEcCCCChHHHHHHHHHhhhhcccCCCceEEEEec
Q 001843 275 VIALIGKAGSGKTTLARIVYNRVYVKRHFTKRAWVHIP 312 (1007)
Q Consensus 275 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s 312 (1007)
++.|.|.+|+|||+||.+++.. ..+.=..++|++..
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~--~~~~g~~v~~~s~e 36 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYA--GLARGEPGLYVTLE 36 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHH--HHHCCCcEEEEECC
Confidence 3679999999999999998774 22333567788754
No 446
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=91.50 E-value=0.13 Score=47.11 Aligned_cols=21 Identities=38% Similarity=0.539 Sum_probs=18.8
Q ss_pred EEEEcCCCChHHHHHHHHHhh
Q 001843 276 IALIGKAGSGKTTLARIVYNR 296 (1007)
Q Consensus 276 i~I~G~gGiGKTtLa~~v~~~ 296 (1007)
|-|+|.+|+|||++|+.++.+
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~ 21 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKD 21 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999884
No 447
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=91.48 E-value=0.16 Score=51.23 Aligned_cols=23 Identities=30% Similarity=0.551 Sum_probs=21.4
Q ss_pred EEEEEEcCCCChHHHHHHHHHhh
Q 001843 274 QVIALIGKAGSGKTTLARIVYNR 296 (1007)
Q Consensus 274 ~vi~I~G~gGiGKTtLa~~v~~~ 296 (1007)
++|.+.|++|+||||+|+.+...
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~ 25 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSV 25 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 78999999999999999999883
No 448
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=91.46 E-value=0.21 Score=51.80 Aligned_cols=22 Identities=41% Similarity=0.853 Sum_probs=20.9
Q ss_pred EEEEEEcCCCChHHHHHHHHHh
Q 001843 274 QVIALIGKAGSGKTTLARIVYN 295 (1007)
Q Consensus 274 ~vi~I~G~gGiGKTtLa~~v~~ 295 (1007)
.+++|+|..|.|||||++.++-
T Consensus 34 e~lgivGeSGsGKSTL~r~l~G 55 (252)
T COG1124 34 ETLGIVGESGSGKSTLARLLAG 55 (252)
T ss_pred CEEEEEcCCCCCHHHHHHHHhc
Confidence 7999999999999999999986
No 449
>PTZ00088 adenylate kinase 1; Provisional
Probab=91.44 E-value=0.22 Score=52.45 Aligned_cols=21 Identities=43% Similarity=0.638 Sum_probs=19.7
Q ss_pred EEEEEcCCCChHHHHHHHHHh
Q 001843 275 VIALIGKAGSGKTTLARIVYN 295 (1007)
Q Consensus 275 vi~I~G~gGiGKTtLa~~v~~ 295 (1007)
-|.|+|++|+||||+|+.++.
T Consensus 8 rIvl~G~PGsGK~T~a~~La~ 28 (229)
T PTZ00088 8 KIVLFGAPGVGKGTFAEILSK 28 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 488999999999999999988
No 450
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=91.42 E-value=0.24 Score=47.14 Aligned_cols=23 Identities=39% Similarity=0.554 Sum_probs=21.7
Q ss_pred EEEEEEcCCCChHHHHHHHHHhh
Q 001843 274 QVIALIGKAGSGKTTLARIVYNR 296 (1007)
Q Consensus 274 ~vi~I~G~gGiGKTtLa~~v~~~ 296 (1007)
.+|.+.|.-|.||||+++.++..
T Consensus 23 ~~i~l~G~lGaGKTtl~~~l~~~ 45 (133)
T TIGR00150 23 TVVLLKGDLGAGKTTLVQGLLQG 45 (133)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHH
Confidence 69999999999999999999984
No 451
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=91.40 E-value=0.02 Score=68.10 Aligned_cols=164 Identities=24% Similarity=0.175 Sum_probs=98.2
Q ss_pred HhhcCCCCCeEEEeecCCCCC--CcccccCCCCCcEEEeccc-C--CCCCc--CccCCCCCCceEEEEEeee-cCCCCcC
Q 001843 813 AVLQLSELHSLKLICETPSYL--PLLEMAEHYKLQKLYLSGH-L--PPNSV--IGDRSFPPNVVTLTLSQLR-LEYDPMP 884 (1007)
Q Consensus 813 ~l~~l~~L~~L~L~~~~~~~~--~~~~l~~~~~L~~L~L~g~-~--~~lp~--~~i~~~l~~L~~L~L~~~~-l~~~~~~ 884 (1007)
.....++|+.|.+........ .......+++|+.|+++++ . ...+. ..+...+++|+.|++++|. ++...+.
T Consensus 183 l~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~ 262 (482)
T KOG1947|consen 183 LLSSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLS 262 (482)
T ss_pred HHhhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHH
Confidence 334478899998887433221 2244556889999999873 2 11111 0122237899999999997 6555555
Q ss_pred cccc-CCCCcEEEeecCC-cCCCceeecCCCCCCCcEEEeccCCCCcce--EEcCCCCccccEeEeeccC---CCC--CC
Q 001843 885 ILGR-LRQLKILRLFGGS-YTGEEMSCSSGEFPNLLVLKLWKLNRLRQW--RIKEGAMPCLRQLEIRSCG---YLV--PP 955 (1007)
Q Consensus 885 ~l~~-Lp~L~~L~L~~~~-~~~~~l~~~~~~fp~L~~L~L~~~~~L~~l--~~~~~~~p~L~~L~l~~c~---~L~--lp 955 (1007)
.+.. +|+|+.|.+..+. ...+.+......+|.|++|+|++|..++.- ......+|+|+.|.+..+. .++ .-
T Consensus 263 ~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~c~~l~~~~l 342 (482)
T KOG1947|consen 263 ALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNGCPSLTDLSL 342 (482)
T ss_pred HHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCCCccHHHHHH
Confidence 5554 8999999976444 244455445567899999999998876432 1112346766666655443 344 11
Q ss_pred cCcccccc-CccEEEeccCCcc
Q 001843 956 TGLKHVTS-SLREFLLTNMPST 976 (1007)
Q Consensus 956 ~~l~~L~~-~L~~L~l~~c~~~ 976 (1007)
.++...+. .+..+.+.+|+..
T Consensus 343 ~~~~~~~~d~~~~~~~~~~~~l 364 (482)
T KOG1947|consen 343 SGLLTLTSDDLAELILRSCPKL 364 (482)
T ss_pred HHhhccCchhHhHHHHhcCCCc
Confidence 12222211 5667777777643
No 452
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=91.38 E-value=1.1 Score=44.68 Aligned_cols=121 Identities=15% Similarity=0.086 Sum_probs=61.0
Q ss_pred EEEEEEcCCCChHHHHHHHHHhhhhcccCCCceEEEEecCC-CCCCHHHHHHHHHHHHhhhhhhh----------ccccC
Q 001843 274 QVIALIGKAGSGKTTLARIVYNRVYVKRHFTKRAWVHIPIM-SMVEDRDVLADILKQIDESLLKV----------EATLS 342 (1007)
Q Consensus 274 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~-~~~~~~~~l~~il~~l~~~~~~~----------~~~~~ 342 (1007)
..|-|++-.|.||||.|..++-. .....+. ++.+-+-+. ....-...++.+ .+....... .....
T Consensus 6 Gli~v~~g~GkGKtt~a~g~a~r-a~~~g~~-v~ivQFlKg~~~~GE~~~l~~~--~~~~~~~g~g~~~~~~~~~~~~~~ 81 (173)
T TIGR00708 6 GIIIVHTGNGKGKTTAAFGMALR-ALGHGKK-VGVIQFIKGAWPNGERAAFEPH--GVEFQVMGTGFTWETQNREADTAI 81 (173)
T ss_pred cEEEEECCCCCChHHHHHHHHHH-HHHCCCe-EEEEEEecCCcccChHHHHHhc--CcEEEECCCCCeecCCCcHHHHHH
Confidence 57778888999999999888773 2223333 222222100 223333344332 111000000 01111
Q ss_pred HHHHHHHHHHHcCCCcE-EEEEeCcCcc---CchhhhhhccccCCCCCCcEEEEEcCCCc
Q 001843 343 AEELMWRITQALDDSTF-LIVMENAEHQ---KSQVWDSFLGKLCSFTQCGKIIITTSSTE 398 (1007)
Q Consensus 343 ~~~l~~~l~~~L~~kr~-LlVlDdv~~~---~~~~~~~l~~l~~~~~~gs~IliTTR~~~ 398 (1007)
.....+..++.+...+| |||||.+-.. ..-..+++..+...-..+..||+|-|+..
T Consensus 82 ~~~~~~~a~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~p 141 (173)
T TIGR00708 82 AKAAWQHAKEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGCP 141 (173)
T ss_pred HHHHHHHHHHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCCC
Confidence 33344555666666666 9999998410 11122233322222144578999999875
No 453
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=91.32 E-value=0.15 Score=49.08 Aligned_cols=21 Identities=38% Similarity=0.642 Sum_probs=19.5
Q ss_pred EEEEEcCCCChHHHHHHHHHh
Q 001843 275 VIALIGKAGSGKTTLARIVYN 295 (1007)
Q Consensus 275 vi~I~G~gGiGKTtLa~~v~~ 295 (1007)
+|+|+|+.|+|||||++.+..
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~ 21 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLE 21 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHh
Confidence 378999999999999999998
No 454
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=91.29 E-value=0.93 Score=46.58 Aligned_cols=22 Identities=32% Similarity=0.629 Sum_probs=21.2
Q ss_pred EEEEEEcCCCChHHHHHHHHHh
Q 001843 274 QVIALIGKAGSGKTTLARIVYN 295 (1007)
Q Consensus 274 ~vi~I~G~gGiGKTtLa~~v~~ 295 (1007)
.+++|.|..|.|||||.+.++.
T Consensus 36 e~~~l~G~nGsGKStLl~~i~G 57 (194)
T cd03213 36 ELTAIMGPSGAGKSTLLNALAG 57 (194)
T ss_pred cEEEEECCCCCCHHHHHHHHhC
Confidence 7999999999999999999988
No 455
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=91.27 E-value=0.69 Score=54.14 Aligned_cols=122 Identities=22% Similarity=0.324 Sum_probs=65.5
Q ss_pred EEEEEEcCCCChHHH-HHHHHHhhhhcccCCCceEEEEecCCCCC--CHHHHHHHHHHHHhhhhhhh-c------c----
Q 001843 274 QVIALIGKAGSGKTT-LARIVYNRVYVKRHFTKRAWVHIPIMSMV--EDRDVLADILKQIDESLLKV-E------A---- 339 (1007)
Q Consensus 274 ~vi~I~G~gGiGKTt-La~~v~~~~~~~~~F~~~~wv~~s~~~~~--~~~~~l~~il~~l~~~~~~~-~------~---- 339 (1007)
+||.|||..|.|||| ||+.+|.+ .|...=-|.+. ++- ....+.+.+.++++..+... + +
T Consensus 372 ~vvvivgETGSGKTTQl~QyL~ed-----GY~~~GmIGcT--QPRRvAAiSVAkrVa~EM~~~lG~~VGYsIRFEdvT~~ 444 (1042)
T KOG0924|consen 372 QVVVIVGETGSGKTTQLAQYLYED-----GYADNGMIGCT--QPRRVAAISVAKRVAEEMGVTLGDTVGYSIRFEDVTSE 444 (1042)
T ss_pred cEEEEEecCCCCchhhhHHHHHhc-----ccccCCeeeec--CchHHHHHHHHHHHHHHhCCccccccceEEEeeecCCC
Confidence 899999999999985 77777774 23211123333 443 33456677777775542111 0 0
Q ss_pred ------ccCHHHHHHHHHHHcCCCcEEEEEeCcCccCchhhhhhc-ccc----CCCCCCcEEEEEcCCCc--ccccccC
Q 001843 340 ------TLSAEELMWRITQALDDSTFLIVMENAEHQKSQVWDSFL-GKL----CSFTQCGKIIITTSSTE--DFVEPLG 405 (1007)
Q Consensus 340 ------~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~~~~~~~~l~-~l~----~~~~~gs~IliTTR~~~--~va~~~~ 405 (1007)
-.+.--+.+.|.+..-+|=-.||+|.+.. ...=.++. ++. .. ...-|+||||-..+ .++++++
T Consensus 445 ~T~IkymTDGiLLrEsL~d~~L~kYSviImDEAHE--RslNtDilfGllk~~lar-RrdlKliVtSATm~a~kf~nfFg 520 (1042)
T KOG0924|consen 445 DTKIKYMTDGILLRESLKDRDLDKYSVIIMDEAHE--RSLNTDILFGLLKKVLAR-RRDLKLIVTSATMDAQKFSNFFG 520 (1042)
T ss_pred ceeEEEeccchHHHHHhhhhhhhheeEEEechhhh--cccchHHHHHHHHHHHHh-hccceEEEeeccccHHHHHHHhC
Confidence 11222333334443334455899999862 21111222 221 11 34569999987654 3455555
No 456
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=91.27 E-value=0.76 Score=54.92 Aligned_cols=69 Identities=22% Similarity=0.297 Sum_probs=46.6
Q ss_pred EEEEEEcCCCChHHHHHHHHHhhhhcccCCCceEEEEecCCCCCCHHHHHHHHHHHHhhhhhhhccccCHHHHHHHHHHH
Q 001843 274 QVIALIGKAGSGKTTLARIVYNRVYVKRHFTKRAWVHIPIMSMVEDRDVLADILKQIDESLLKVEATLSAEELMWRITQA 353 (1007)
Q Consensus 274 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~l~~il~~l~~~~~~~~~~~~~~~l~~~l~~~ 353 (1007)
+=|-++|++|.|||-+||+|+.. .. .-|++|. .+ +++..- ...+++.+.+...+.
T Consensus 706 SGILLYGPPGTGKTLlAKAVATE--cs-----L~FlSVK---GP-------ELLNMY--------VGqSE~NVR~VFerA 760 (953)
T KOG0736|consen 706 SGILLYGPPGTGKTLLAKAVATE--CS-----LNFLSVK---GP-------ELLNMY--------VGQSEENVREVFERA 760 (953)
T ss_pred ceeEEECCCCCchHHHHHHHHhh--ce-----eeEEeec---CH-------HHHHHH--------hcchHHHHHHHHHHh
Confidence 57889999999999999999983 22 2356664 21 122222 122445555555566
Q ss_pred cCCCcEEEEEeCcC
Q 001843 354 LDDSTFLIVMENAE 367 (1007)
Q Consensus 354 L~~kr~LlVlDdv~ 367 (1007)
=..++|.|.||.++
T Consensus 761 R~A~PCVIFFDELD 774 (953)
T KOG0736|consen 761 RSAAPCVIFFDELD 774 (953)
T ss_pred hccCCeEEEecccc
Confidence 66799999999987
No 457
>PRK13236 nitrogenase reductase; Reviewed
Probab=91.26 E-value=0.28 Score=54.11 Aligned_cols=23 Identities=35% Similarity=0.497 Sum_probs=20.9
Q ss_pred cEEEEEEcCCCChHHHHHHHHHh
Q 001843 273 TQVIALIGKAGSGKTTLARIVYN 295 (1007)
Q Consensus 273 ~~vi~I~G~gGiGKTtLa~~v~~ 295 (1007)
.+||++.|-||+||||+|..++.
T Consensus 6 ~~~~~~~GKGGVGKTt~a~NLA~ 28 (296)
T PRK13236 6 IRQIAFYGKGGIGKSTTSQNTLA 28 (296)
T ss_pred ceEEEEECCCcCCHHHHHHHHHH
Confidence 39999999999999999888776
No 458
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=91.23 E-value=0.55 Score=53.98 Aligned_cols=84 Identities=14% Similarity=0.131 Sum_probs=48.9
Q ss_pred EEEEEEcCCCChHHHHHHHHHhhhhcccCCCceEEEEecCCCCC-CHHHHHHHHHHHHhhhhhhh-----cccc------
Q 001843 274 QVIALIGKAGSGKTTLARIVYNRVYVKRHFTKRAWVHIPIMSMV-EDRDVLADILKQIDESLLKV-----EATL------ 341 (1007)
Q Consensus 274 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~-~~~~~l~~il~~l~~~~~~~-----~~~~------ 341 (1007)
+.++|+|..|+|||||++.+++. .. -+.++++-++ +.. ...++..+.+..-+.. .. ..+.
T Consensus 159 qri~I~G~sG~GKTtLL~~I~~~--~~--~d~~v~~~iG--ER~rEv~ef~~~~l~~~~l~--rsvvv~atsd~~~~~r~ 230 (442)
T PRK08927 159 QRMGIFAGSGVGKSVLLSMLARN--AD--ADVSVIGLIG--ERGREVQEFLQDDLGPEGLA--RSVVVVATSDEPALMRR 230 (442)
T ss_pred CEEEEECCCCCCHHHHHHHHHhc--cC--CCEEEEEEEe--cCcHHHHHHHHHHhhccCce--eEEEEEECCCCCHHHHH
Confidence 78899999999999999999983 21 2345555555 333 3344444444332111 00 0111
Q ss_pred ----CHHHHHHHHHHHcCCCcEEEEEeCcC
Q 001843 342 ----SAEELMWRITQALDDSTFLIVMENAE 367 (1007)
Q Consensus 342 ----~~~~l~~~l~~~L~~kr~LlVlDdv~ 367 (1007)
..-...+.+++ +++.+|+++||+-
T Consensus 231 ~a~~~a~tiAEyfrd--~G~~Vll~~DslT 258 (442)
T PRK08927 231 QAAYLTLAIAEYFRD--QGKDVLCLMDSVT 258 (442)
T ss_pred HHHHHHHHHHHHHHH--CCCcEEEEEeCcH
Confidence 11223333432 5899999999985
No 459
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=91.21 E-value=0.42 Score=49.07 Aligned_cols=22 Identities=41% Similarity=0.634 Sum_probs=20.6
Q ss_pred EEEEEcCCCChHHHHHHHHHhh
Q 001843 275 VIALIGKAGSGKTTLARIVYNR 296 (1007)
Q Consensus 275 vi~I~G~gGiGKTtLa~~v~~~ 296 (1007)
+|+|.|+.|+||||+++.+++.
T Consensus 2 ~I~ieG~~GsGKtT~~~~L~~~ 23 (200)
T cd01672 2 FIVFEGIDGAGKTTLIELLAER 23 (200)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999983
No 460
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=91.20 E-value=0.25 Score=51.65 Aligned_cols=87 Identities=17% Similarity=0.306 Sum_probs=47.9
Q ss_pred EEEEEEcCCCChHHHHHHHHHhhhhcccCCCceEEEEe----c---CCCCCCHHH--HHHHHHHHHhhhhhhhcc-----
Q 001843 274 QVIALIGKAGSGKTTLARIVYNRVYVKRHFTKRAWVHI----P---IMSMVEDRD--VLADILKQIDESLLKVEA----- 339 (1007)
Q Consensus 274 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~----s---~~~~~~~~~--~l~~il~~l~~~~~~~~~----- 339 (1007)
.+|.++||+|.||||..++++.+ ....+....-|.. . -..+.++++ -.++..++.+.. +.+.
T Consensus 20 ~~ilVvGMAGSGKTTF~QrL~~h--l~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LG--PNGgI~TsL 95 (366)
T KOG1532|consen 20 VIILVVGMAGSGKTTFMQRLNSH--LHAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLG--PNGGIVTSL 95 (366)
T ss_pred cEEEEEecCCCCchhHHHHHHHH--HhhccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCC--CCcchhhhH
Confidence 78999999999999999999984 4344433222221 1 002334444 345666665543 2221
Q ss_pred ---ccCHHHHHHHHHHHcCCCcEEEEEeC
Q 001843 340 ---TLSAEELMWRITQALDDSTFLIVMEN 365 (1007)
Q Consensus 340 ---~~~~~~l~~~l~~~L~~kr~LlVlDd 365 (1007)
....++.+..+.+.-..-+|.| +|-
T Consensus 96 NLF~tk~dqv~~~iek~~~~~~~~l-iDT 123 (366)
T KOG1532|consen 96 NLFATKFDQVIELIEKRAEEFDYVL-IDT 123 (366)
T ss_pred HHHHHHHHHHHHHHHHhhcccCEEE-EcC
Confidence 1234555555555544444443 443
No 461
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=91.15 E-value=0.26 Score=55.62 Aligned_cols=92 Identities=16% Similarity=0.212 Sum_probs=55.4
Q ss_pred EEEEEEcCCCChHHHHHHHHHhhhhcccCCCceEEEEecCCCCCCHHHHHHHHHHHHhhhhhhhccccCHHHHHHHHHHH
Q 001843 274 QVIALIGKAGSGKTTLARIVYNRVYVKRHFTKRAWVHIPIMSMVEDRDVLADILKQIDESLLKVEATLSAEELMWRITQA 353 (1007)
Q Consensus 274 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~l~~il~~l~~~~~~~~~~~~~~~l~~~l~~~ 353 (1007)
..|.|.|..|.||||+.+.+.+ .+..+....+|.- . .+.... ... ...+-.+ .+...+.......++..
T Consensus 123 g~ili~G~tGSGKTT~l~al~~--~i~~~~~~~i~ti-E--dp~E~~--~~~-~~~~i~q---~evg~~~~~~~~~l~~~ 191 (343)
T TIGR01420 123 GLILVTGPTGSGKSTTLASMID--YINKNAAGHIITI-E--DPIEYV--HRN-KRSLINQ---REVGLDTLSFANALRAA 191 (343)
T ss_pred cEEEEECCCCCCHHHHHHHHHH--hhCcCCCCEEEEE-c--CChhhh--ccC-ccceEEc---cccCCCCcCHHHHHHHh
Confidence 7899999999999999999887 4555555555543 2 221110 000 0000000 01111223456667888
Q ss_pred cCCCcEEEEEeCcCccCchhhhhhc
Q 001843 354 LDDSTFLIVMENAEHQKSQVWDSFL 378 (1007)
Q Consensus 354 L~~kr~LlVlDdv~~~~~~~~~~l~ 378 (1007)
|+..+=.|++|.+. +.+.+....
T Consensus 192 lr~~pd~i~vgEir--d~~~~~~~l 214 (343)
T TIGR01420 192 LREDPDVILIGEMR--DLETVELAL 214 (343)
T ss_pred hccCCCEEEEeCCC--CHHHHHHHH
Confidence 88899999999998 666665533
No 462
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=91.14 E-value=0.33 Score=51.80 Aligned_cols=33 Identities=33% Similarity=0.436 Sum_probs=27.8
Q ss_pred CCCCcEEEEEEcCCCChHHHHHHHHHhhhhcccCC
Q 001843 269 TTTTTQVIALIGKAGSGKTTLARIVYNRVYVKRHF 303 (1007)
Q Consensus 269 ~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F 303 (1007)
+-..+..+.|||.+|.|||-+|+.|+. .+.-.|
T Consensus 162 gIk~Pkg~ll~GppGtGKTlla~~Vaa--~mg~nf 194 (388)
T KOG0651|consen 162 GIKPPKGLLLYGPPGTGKTLLARAVAA--TMGVNF 194 (388)
T ss_pred CCCCCceeEEeCCCCCchhHHHHHHHH--hcCCce
Confidence 445668999999999999999999999 565555
No 463
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=91.11 E-value=0.71 Score=55.23 Aligned_cols=22 Identities=27% Similarity=0.375 Sum_probs=19.8
Q ss_pred EEEEEEcCCCChHHHHHHHHHh
Q 001843 274 QVIALIGKAGSGKTTLARIVYN 295 (1007)
Q Consensus 274 ~vi~I~G~gGiGKTtLa~~v~~ 295 (1007)
.-|.|+|..|+||+++|+.+++
T Consensus 228 ~pvlI~GE~GtGK~~lA~aiH~ 249 (520)
T PRK10820 228 APLLITGDTGTGKDLLAYACHL 249 (520)
T ss_pred CCEEEECCCCccHHHHHHHHHH
Confidence 4578999999999999999876
No 464
>COG2842 Uncharacterized ATPase, putative transposase [General function prediction only]
Probab=91.09 E-value=0.79 Score=49.09 Aligned_cols=95 Identities=17% Similarity=0.141 Sum_probs=67.2
Q ss_pred EEEEEEcCCCChHHHHHHHHHhhhhcccCCCceEEE-EecCCCCCCHHHHHHHHHHHHhhhhhhhccccCHHHHHHHHHH
Q 001843 274 QVIALIGKAGSGKTTLARIVYNRVYVKRHFTKRAWV-HIPIMSMVEDRDVLADILKQIDESLLKVEATLSAEELMWRITQ 352 (1007)
Q Consensus 274 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv-~~s~~~~~~~~~~l~~il~~l~~~~~~~~~~~~~~~l~~~l~~ 352 (1007)
+.+.++|+.|+|||+-++.+++. . ..+|+ ..+ ..+....++..+....... ...........+..
T Consensus 95 ~l~~vyg~~g~gKt~a~~~y~~s--~-----p~~~l~~~~--p~~~a~~~i~~i~~~~~~~-----~~~~~~d~~~~~~~ 160 (297)
T COG2842 95 SLVVVYGYAGLGKTQAAKNYAPS--N-----PNALLIEAD--PSYTALVLILIICAAAFGA-----TDGTINDLTERLMI 160 (297)
T ss_pred ceEEEeccccchhHHHHHhhccc--C-----ccceeecCC--hhhHHHHHHHHHHHHHhcc-----cchhHHHHHHHHHH
Confidence 68899999999999999999982 1 23344 355 5556666666665555443 34455666667777
Q ss_pred HcCCCcEEEEEeCcCccCchhhhhhccccC
Q 001843 353 ALDDSTFLIVMENAEHQKSQVWDSFLGKLC 382 (1007)
Q Consensus 353 ~L~~kr~LlVlDdv~~~~~~~~~~l~~l~~ 382 (1007)
.+++..-+|+.|+.+.-....++.++...+
T Consensus 161 ~l~~~~~~iivDEA~~L~~~ale~lr~i~d 190 (297)
T COG2842 161 RLRDTVRLIIVDEADRLPYRALEELRRIHD 190 (297)
T ss_pred HHccCcceeeeehhhccChHHHHHHHHHHH
Confidence 778888899999998767777777774443
No 465
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=91.06 E-value=0.18 Score=49.80 Aligned_cols=28 Identities=36% Similarity=0.533 Sum_probs=23.5
Q ss_pred EEEEEEcCCCChHHHHHHHHHhhhhcccCC
Q 001843 274 QVIALIGKAGSGKTTLARIVYNRVYVKRHF 303 (1007)
Q Consensus 274 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F 303 (1007)
+-|.++||.|.||||+.+++++ ...-+|
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk--~L~~~F 30 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAK--ALNLPF 30 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHH--HcCCCc
Confidence 5678999999999999999998 555454
No 466
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=91.06 E-value=0.22 Score=51.53 Aligned_cols=31 Identities=35% Similarity=0.459 Sum_probs=25.0
Q ss_pred CCcEEEEEEcCCCChHHHHHHHHHhhhhcccCC
Q 001843 271 TTTQVIALIGKAGSGKTTLARIVYNRVYVKRHF 303 (1007)
Q Consensus 271 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F 303 (1007)
..++-|..+|++|.|||-+|++|+| +....|
T Consensus 209 dppkgvllygppgtgktl~aravan--rtdacf 239 (435)
T KOG0729|consen 209 DPPKGVLLYGPPGTGKTLCARAVAN--RTDACF 239 (435)
T ss_pred CCCCceEEeCCCCCchhHHHHHHhc--ccCceE
Confidence 3447788999999999999999999 554443
No 467
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=91.05 E-value=0.27 Score=54.29 Aligned_cols=22 Identities=36% Similarity=0.496 Sum_probs=20.1
Q ss_pred EEEEEEcCCCChHHHHHHHHHh
Q 001843 274 QVIALIGKAGSGKTTLARIVYN 295 (1007)
Q Consensus 274 ~vi~I~G~gGiGKTtLa~~v~~ 295 (1007)
|++.+.|-||+||||+|-+.+-
T Consensus 2 r~~~~~GKGGVGKTT~aaA~A~ 23 (305)
T PF02374_consen 2 RILFFGGKGGVGKTTVAAALAL 23 (305)
T ss_dssp SEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCcHHHHHHHHH
Confidence 7899999999999999988776
No 468
>PRK08149 ATP synthase SpaL; Validated
Probab=91.05 E-value=0.41 Score=54.91 Aligned_cols=85 Identities=14% Similarity=0.164 Sum_probs=49.5
Q ss_pred EEEEEEcCCCChHHHHHHHHHhhhhcccCCCceEEEEecCCCCCCHHHHHHHHHHHHhhhhhhh-----ccc--------
Q 001843 274 QVIALIGKAGSGKTTLARIVYNRVYVKRHFTKRAWVHIPIMSMVEDRDVLADILKQIDESLLKV-----EAT-------- 340 (1007)
Q Consensus 274 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~l~~il~~l~~~~~~~-----~~~-------- 340 (1007)
..++|+|..|.|||||...+++.. .-+.++...+. ....+..++..+.+...... .. ..+
T Consensus 152 q~i~I~G~sG~GKTTLl~~i~~~~----~~dv~v~g~Ig-~rg~ev~e~~~~~l~~~~~~--~~~vV~~~sd~p~~~r~~ 224 (428)
T PRK08149 152 QRMGIFASAGCGKTSLMNMLIEHS----EADVFVIGLIG-ERGREVTEFVESLRASSRRE--KCVLVYATSDFSSVDRCN 224 (428)
T ss_pred CEEEEECCCCCChhHHHHHHhcCC----CCCeEEEEEEe-eCCccHHHHHHHHhhccccc--ceEEEEECCCCCHHHHHh
Confidence 788999999999999999998832 12333333333 13445555655555532211 00 011
Q ss_pred --cCHHHHHHHHHHHcCCCcEEEEEeCcC
Q 001843 341 --LSAEELMWRITQALDDSTFLIVMENAE 367 (1007)
Q Consensus 341 --~~~~~l~~~l~~~L~~kr~LlVlDdv~ 367 (1007)
.......+.++. +++.+||++||+-
T Consensus 225 a~~~a~tiAE~fr~--~G~~Vll~~DslT 251 (428)
T PRK08149 225 AALVATTVAEYFRD--QGKRVVLFIDSMT 251 (428)
T ss_pred HHHHHHHHHHHHHH--cCCCEEEEccchH
Confidence 111222333332 5899999999985
No 469
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=91.00 E-value=0.17 Score=49.61 Aligned_cols=20 Identities=50% Similarity=0.821 Sum_probs=19.0
Q ss_pred EEEEcCCCChHHHHHHHHHh
Q 001843 276 IALIGKAGSGKTTLARIVYN 295 (1007)
Q Consensus 276 i~I~G~gGiGKTtLa~~v~~ 295 (1007)
|.|+|++|.||||+|+.++.
T Consensus 2 i~l~G~~GsGKstla~~la~ 21 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAK 21 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHH
Confidence 68999999999999999988
No 470
>PRK13946 shikimate kinase; Provisional
Probab=90.94 E-value=0.19 Score=51.14 Aligned_cols=22 Identities=32% Similarity=0.634 Sum_probs=21.2
Q ss_pred EEEEEEcCCCChHHHHHHHHHh
Q 001843 274 QVIALIGKAGSGKTTLARIVYN 295 (1007)
Q Consensus 274 ~vi~I~G~gGiGKTtLa~~v~~ 295 (1007)
+.|.++|++|+||||+|+.+++
T Consensus 11 ~~I~l~G~~GsGKsti~~~LA~ 32 (184)
T PRK13946 11 RTVVLVGLMGAGKSTVGRRLAT 32 (184)
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 6899999999999999999999
No 471
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=90.94 E-value=0.67 Score=57.22 Aligned_cols=22 Identities=36% Similarity=0.527 Sum_probs=20.1
Q ss_pred EEEEEEcCCCChHHHHHHHHHh
Q 001843 274 QVIALIGKAGSGKTTLARIVYN 295 (1007)
Q Consensus 274 ~vi~I~G~gGiGKTtLa~~v~~ 295 (1007)
.-|.|+|..|+||+++|+.+++
T Consensus 349 ~pvli~Ge~GtGK~~~A~~ih~ 370 (638)
T PRK11388 349 FPVLLCGEEGVGKALLAQAIHN 370 (638)
T ss_pred CCEEEECCCCcCHHHHHHHHHH
Confidence 4478999999999999999998
No 472
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=90.92 E-value=0.19 Score=50.53 Aligned_cols=23 Identities=35% Similarity=0.621 Sum_probs=21.2
Q ss_pred EEEEEEcCCCChHHHHHHHHHhh
Q 001843 274 QVIALIGKAGSGKTTLARIVYNR 296 (1007)
Q Consensus 274 ~vi~I~G~gGiGKTtLa~~v~~~ 296 (1007)
+.|.|+|+.|.||||+|+.+++.
T Consensus 5 ~~I~liG~~GaGKStl~~~La~~ 27 (172)
T PRK05057 5 RNIFLVGPMGAGKSTIGRQLAQQ 27 (172)
T ss_pred CEEEEECCCCcCHHHHHHHHHHH
Confidence 57999999999999999999983
No 473
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=90.87 E-value=0.21 Score=51.95 Aligned_cols=27 Identities=30% Similarity=0.443 Sum_probs=24.0
Q ss_pred CCCcEEEEEEcCCCChHHHHHHHHHhh
Q 001843 270 TTTTQVIALIGKAGSGKTTLARIVYNR 296 (1007)
Q Consensus 270 ~~~~~vi~I~G~gGiGKTtLa~~v~~~ 296 (1007)
.+++++|+++|..|+|||||..++.+.
T Consensus 19 ~~~~~~i~~~G~~gsGKTTli~~l~~~ 45 (207)
T TIGR00073 19 KHGLVVLNFMSSPGSGKTTLIEKLIDN 45 (207)
T ss_pred hcCcEEEEEECCCCCCHHHHHHHHHHH
Confidence 446699999999999999999999883
No 474
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=90.85 E-value=0.22 Score=51.21 Aligned_cols=23 Identities=22% Similarity=0.365 Sum_probs=21.7
Q ss_pred EEEEEEcCCCChHHHHHHHHHhh
Q 001843 274 QVIALIGKAGSGKTTLARIVYNR 296 (1007)
Q Consensus 274 ~vi~I~G~gGiGKTtLa~~v~~~ 296 (1007)
.+|.|.|.+|+||||+|+.++..
T Consensus 4 ~~i~i~G~~G~GKst~a~~l~~~ 26 (197)
T PRK12339 4 TIHFIGGIPGVGKTSISGYIARH 26 (197)
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 79999999999999999999983
No 475
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=90.85 E-value=0.18 Score=49.44 Aligned_cols=20 Identities=40% Similarity=0.760 Sum_probs=18.6
Q ss_pred EEEEEcCCCChHHHHHHHHH
Q 001843 275 VIALIGKAGSGKTTLARIVY 294 (1007)
Q Consensus 275 vi~I~G~gGiGKTtLa~~v~ 294 (1007)
.|+|.|.+|+||||+++.+.
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 58999999999999999887
No 476
>PLN02200 adenylate kinase family protein
Probab=90.81 E-value=0.26 Score=52.24 Aligned_cols=23 Identities=26% Similarity=0.410 Sum_probs=21.4
Q ss_pred cEEEEEEcCCCChHHHHHHHHHh
Q 001843 273 TQVIALIGKAGSGKTTLARIVYN 295 (1007)
Q Consensus 273 ~~vi~I~G~gGiGKTtLa~~v~~ 295 (1007)
+.+|.|.|++|+||||+|+.++.
T Consensus 43 ~~ii~I~G~PGSGKsT~a~~La~ 65 (234)
T PLN02200 43 PFITFVLGGPGSGKGTQCEKIVE 65 (234)
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 37899999999999999999987
No 477
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=90.79 E-value=0.15 Score=29.61 Aligned_cols=16 Identities=38% Similarity=0.461 Sum_probs=6.0
Q ss_pred cCcEEecccCCCcccC
Q 001843 695 FLEYLGLRSTFIDSLP 710 (1007)
Q Consensus 695 ~Lr~L~L~~n~i~~LP 710 (1007)
+|+.|+|++|.++++|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 4455555555554444
No 478
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=90.77 E-value=1.1 Score=48.28 Aligned_cols=54 Identities=13% Similarity=0.239 Sum_probs=39.9
Q ss_pred EEEEEEcCCCChHHHHHHHHHhhhhcccCCCceEEEEecCCCCCCHHHHHHHHHHHHhh
Q 001843 274 QVIALIGKAGSGKTTLARIVYNRVYVKRHFTKRAWVHIPIMSMVEDRDVLADILKQIDE 332 (1007)
Q Consensus 274 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~l~~il~~l~~ 332 (1007)
.++.|-|.+|+|||++|.+++.+...... ..++|++ -..+..++...++.....
T Consensus 20 ~L~vi~a~pg~GKT~~~l~ia~~~a~~~~-~~vly~S----lEm~~~~l~~R~la~~s~ 73 (259)
T PF03796_consen 20 ELTVIAARPGVGKTAFALQIALNAALNGG-YPVLYFS----LEMSEEELAARLLARLSG 73 (259)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHTTS-SEEEEEE----SSS-HHHHHHHHHHHHHT
T ss_pred cEEEEEecccCCchHHHHHHHHHHHHhcC-CeEEEEc----CCCCHHHHHHHHHHHhhc
Confidence 68999999999999999999996443322 5667776 456677788888777654
No 479
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=90.75 E-value=0.32 Score=52.88 Aligned_cols=37 Identities=27% Similarity=0.246 Sum_probs=27.3
Q ss_pred EEEEEEcCCCChHHHHHHHHHhhhhcccCCCceEEEEec
Q 001843 274 QVIALIGKAGSGKTTLARIVYNRVYVKRHFTKRAWVHIP 312 (1007)
Q Consensus 274 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s 312 (1007)
++|+|.|-||+||||+|..++. .....=..++-|+..
T Consensus 2 ~~iav~~KGGvGKTT~~~nLA~--~La~~G~kVlliD~D 38 (270)
T cd02040 2 RQIAIYGKGGIGKSTTTQNLSA--ALAEMGKKVMIVGCD 38 (270)
T ss_pred cEEEEEeCCcCCHHHHHHHHHH--HHHhCCCeEEEEEcC
Confidence 6788889999999999999888 343322245666665
No 480
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=90.74 E-value=0.41 Score=54.80 Aligned_cols=22 Identities=50% Similarity=0.643 Sum_probs=20.7
Q ss_pred EEEEEEcCCCChHHHHHHHHHh
Q 001843 274 QVIALIGKAGSGKTTLARIVYN 295 (1007)
Q Consensus 274 ~vi~I~G~gGiGKTtLa~~v~~ 295 (1007)
..|.++|++|+|||++|+.++.
T Consensus 117 ~~iLL~GP~GsGKT~lAraLA~ 138 (413)
T TIGR00382 117 SNILLIGPTGSGKTLLAQTLAR 138 (413)
T ss_pred ceEEEECCCCcCHHHHHHHHHH
Confidence 5789999999999999999997
No 481
>PRK00300 gmk guanylate kinase; Provisional
Probab=90.73 E-value=0.22 Score=51.61 Aligned_cols=23 Identities=39% Similarity=0.703 Sum_probs=21.7
Q ss_pred EEEEEEcCCCChHHHHHHHHHhh
Q 001843 274 QVIALIGKAGSGKTTLARIVYNR 296 (1007)
Q Consensus 274 ~vi~I~G~gGiGKTtLa~~v~~~ 296 (1007)
.+|+|+|+.|+||||||+.++..
T Consensus 6 ~~i~i~G~sGsGKstl~~~l~~~ 28 (205)
T PRK00300 6 LLIVLSGPSGAGKSTLVKALLER 28 (205)
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 79999999999999999999983
No 482
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=90.71 E-value=0.28 Score=59.40 Aligned_cols=55 Identities=13% Similarity=0.199 Sum_probs=41.8
Q ss_pred EEEEEEcCCCChHHHHHHHHHhhhhcc-cCCCceEEEEecCCCCCCHHHHHHHHHHHHhhh
Q 001843 274 QVIALIGKAGSGKTTLARIVYNRVYVK-RHFTKRAWVHIPIMSMVEDRDVLADILKQIDES 333 (1007)
Q Consensus 274 ~vi~I~G~gGiGKTtLa~~v~~~~~~~-~~F~~~~wv~~s~~~~~~~~~~l~~il~~l~~~ 333 (1007)
+.+.++|.+|+||||+|+.+++ .+- .+|+..+|+.- ...+...+++.++.+++..
T Consensus 51 ~~~l~~G~~G~GKttla~~l~~--~l~~~~~~~~~~~~n---p~~~~~~~~~~v~~~~G~~ 106 (637)
T PRK13765 51 RHVMMIGSPGTGKSMLAKAMAE--LLPKEELQDILVYPN---PEDPNNPKIRTVPAGKGKQ 106 (637)
T ss_pred CeEEEECCCCCcHHHHHHHHHH--HcChHhHHHheEeeC---CCcchHHHHHHHHHhcCHH
Confidence 4678999999999999999998 343 34577788653 4557778888888777665
No 483
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=90.65 E-value=0.55 Score=53.85 Aligned_cols=22 Identities=27% Similarity=0.496 Sum_probs=20.8
Q ss_pred EEEEEEcCCCChHHHHHHHHHh
Q 001843 274 QVIALIGKAGSGKTTLARIVYN 295 (1007)
Q Consensus 274 ~vi~I~G~gGiGKTtLa~~v~~ 295 (1007)
..++|+|..|+|||||++.++.
T Consensus 141 q~i~I~G~sG~GKTtLl~~I~~ 162 (418)
T TIGR03498 141 QRLGIFAGSGVGKSTLLSMLAR 162 (418)
T ss_pred cEEEEECCCCCChHHHHHHHhC
Confidence 7899999999999999999887
No 484
>PRK13768 GTPase; Provisional
Probab=90.65 E-value=0.35 Score=51.99 Aligned_cols=36 Identities=31% Similarity=0.523 Sum_probs=26.6
Q ss_pred EEEEEEcCCCChHHHHHHHHHhhhhcccCCCceEEEEe
Q 001843 274 QVIALIGKAGSGKTTLARIVYNRVYVKRHFTKRAWVHI 311 (1007)
Q Consensus 274 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~ 311 (1007)
.++.|+|.||+||||++..+.. .....-..++.|+.
T Consensus 3 ~~i~v~G~~G~GKTt~~~~~~~--~l~~~g~~v~~i~~ 38 (253)
T PRK13768 3 YIVFFLGTAGSGKTTLTKALSD--WLEEQGYDVAIVNL 38 (253)
T ss_pred EEEEEECCCCccHHHHHHHHHH--HHHhcCCceEEEEC
Confidence 7899999999999999998887 33333334555554
No 485
>PLN02165 adenylate isopentenyltransferase
Probab=90.63 E-value=0.26 Score=54.33 Aligned_cols=23 Identities=35% Similarity=0.641 Sum_probs=21.5
Q ss_pred EEEEEEcCCCChHHHHHHHHHhh
Q 001843 274 QVIALIGKAGSGKTTLARIVYNR 296 (1007)
Q Consensus 274 ~vi~I~G~gGiGKTtLa~~v~~~ 296 (1007)
.+|+|+|+.|+||||||..++..
T Consensus 44 ~iivIiGPTGSGKStLA~~LA~~ 66 (334)
T PLN02165 44 KVVVIMGATGSGKSRLSVDLATR 66 (334)
T ss_pred CEEEEECCCCCcHHHHHHHHHHH
Confidence 69999999999999999999883
No 486
>PRK14530 adenylate kinase; Provisional
Probab=90.55 E-value=0.2 Score=52.50 Aligned_cols=22 Identities=32% Similarity=0.453 Sum_probs=20.4
Q ss_pred EEEEEEcCCCChHHHHHHHHHh
Q 001843 274 QVIALIGKAGSGKTTLARIVYN 295 (1007)
Q Consensus 274 ~vi~I~G~gGiGKTtLa~~v~~ 295 (1007)
+.|.|+|++|+||||+|+.++.
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~ 25 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAE 25 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999988
No 487
>PRK14527 adenylate kinase; Provisional
Probab=90.54 E-value=0.24 Score=50.73 Aligned_cols=23 Identities=30% Similarity=0.533 Sum_probs=21.5
Q ss_pred EEEEEEcCCCChHHHHHHHHHhh
Q 001843 274 QVIALIGKAGSGKTTLARIVYNR 296 (1007)
Q Consensus 274 ~vi~I~G~gGiGKTtLa~~v~~~ 296 (1007)
.+|.|+|.+|.||||+|+.+++.
T Consensus 7 ~~i~i~G~pGsGKsT~a~~La~~ 29 (191)
T PRK14527 7 KVVIFLGPPGAGKGTQAERLAQE 29 (191)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 79999999999999999999873
No 488
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=90.52 E-value=0.27 Score=53.81 Aligned_cols=37 Identities=22% Similarity=0.162 Sum_probs=26.8
Q ss_pred EEEEEEcCCCChHHHHHHHHHhhhhcccCCCceEEEEec
Q 001843 274 QVIALIGKAGSGKTTLARIVYNRVYVKRHFTKRAWVHIP 312 (1007)
Q Consensus 274 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s 312 (1007)
++|+|+|-||+||||+|..++. .....=..++-|+..
T Consensus 2 ~~i~~~gKGGVGKTT~a~nLA~--~La~~G~rVLliD~D 38 (279)
T PRK13230 2 RKFCFYGKGGIGKSTTVCNIAA--ALAESGKKVLVVGCD 38 (279)
T ss_pred cEEEEECCCCCcHHHHHHHHHH--HHHhCCCEEEEEeeC
Confidence 6899999999999999999887 333332345555544
No 489
>PF00142 Fer4_NifH: 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family; InterPro: IPR000392 This entry represents members of the NifH/BchL/ChlL family. Nitrogen fixing bacteria possess a nitrogenase enzyme complex that catalyses the reduction of molecular nitrogen to ammonia [, , ]. The nitrogenase enzyme complex consists of two components: Component I is nitrogenase MoFe protein or dinitrogenase, which contains 2 molecules each of 2 non-identical subunits. Component II is nitrogenase Fe protein or dinitrogenase reductase, which is a homodimer. The monomer is encoded by the nifH gene []. Component II has 2 ATP-binding domains and one 4Fe-4S cluster per homodimer: it supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component I for the reduction of molecular nitrogen to ammonia []. There are a number of conserved regions in the sequence of these proteins: in the N-terminal section there is an ATP-binding site motif 'A' (P-loop) IPR001687 from INTERPRO and in the central section there are two conserved cysteines which have been shown, in nifH, to be the ligands of the 4Fe-4S cluster. Protochlorophyllide reductase is involved in light-independent chlorophyll biosynthesis. The light-independent reaction uses Mg-ATP and reduced ferredoxin to reduce ring D of protochlorophyllide (Pchlide) to form chlorophyllide a (Chlide). This enzyme complex is composed of three subunits: ChlL, ChlN and ChlB. ChlL is present as a homodimer, and binds one 4Fe-4S cluster per dimer. The conserved domains, including the ATP-binding motif and the Fe-S binding motif found in the three subunits, are similar to those in nitrogenases []. ; GO: 0005524 ATP binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1CP2_A 2AFI_F 1N2C_F 1FP6_C 2AFK_G 1M34_M 1XD8_A 1NIP_A 1M1Y_N 1G21_H ....
Probab=90.41 E-value=0.32 Score=51.34 Aligned_cols=37 Identities=27% Similarity=0.230 Sum_probs=28.1
Q ss_pred EEEEEEcCCCChHHHHHHHHHhhhhcccCCCceEEEEec
Q 001843 274 QVIALIGKAGSGKTTLARIVYNRVYVKRHFTKRAWVHIP 312 (1007)
Q Consensus 274 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s 312 (1007)
+.|+|+|-|||||+|.+..+.- .....-..++-|-++
T Consensus 1 r~IAiYGKGGIGKST~~~Nlsa--ala~~G~kVl~iGCD 37 (273)
T PF00142_consen 1 RKIAIYGKGGIGKSTTASNLSA--ALAEMGKKVLQIGCD 37 (273)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH--HHHHTT--EEEEEES
T ss_pred CeEEEEcCCCcccChhhhHHHH--HHHhccceeeEeccc
Confidence 4689999999999999999877 455555667777665
No 490
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=90.41 E-value=1.1 Score=53.99 Aligned_cols=22 Identities=36% Similarity=0.678 Sum_probs=20.8
Q ss_pred EEEEEEcCCCChHHHHHHHHHh
Q 001843 274 QVIALIGKAGSGKTTLARIVYN 295 (1007)
Q Consensus 274 ~vi~I~G~gGiGKTtLa~~v~~ 295 (1007)
..++|+|..|.|||||++.+..
T Consensus 362 ~~vaIvG~SGsGKSTLl~lL~g 383 (529)
T TIGR02868 362 ERVAILGPSGSGKSTLLMLLTG 383 (529)
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 7899999999999999999876
No 491
>PRK14737 gmk guanylate kinase; Provisional
Probab=90.38 E-value=0.25 Score=50.41 Aligned_cols=22 Identities=23% Similarity=0.483 Sum_probs=21.3
Q ss_pred EEEEEEcCCCChHHHHHHHHHh
Q 001843 274 QVIALIGKAGSGKTTLARIVYN 295 (1007)
Q Consensus 274 ~vi~I~G~gGiGKTtLa~~v~~ 295 (1007)
++|.|+|+.|+|||||++++..
T Consensus 5 ~~ivl~GpsG~GK~tl~~~l~~ 26 (186)
T PRK14737 5 KLFIISSVAGGGKSTIIQALLE 26 (186)
T ss_pred eEEEEECCCCCCHHHHHHHHHh
Confidence 8999999999999999999988
No 492
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=90.38 E-value=0.21 Score=51.00 Aligned_cols=22 Identities=36% Similarity=0.599 Sum_probs=20.7
Q ss_pred EEEEEEcCCCChHHHHHHHHHh
Q 001843 274 QVIALIGKAGSGKTTLARIVYN 295 (1007)
Q Consensus 274 ~vi~I~G~gGiGKTtLa~~v~~ 295 (1007)
.++.|+|+.|.|||||++.++.
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~ 24 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQ 24 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 5899999999999999999987
No 493
>PRK13975 thymidylate kinase; Provisional
Probab=90.34 E-value=0.23 Score=51.03 Aligned_cols=23 Identities=39% Similarity=0.614 Sum_probs=21.6
Q ss_pred EEEEEEcCCCChHHHHHHHHHhh
Q 001843 274 QVIALIGKAGSGKTTLARIVYNR 296 (1007)
Q Consensus 274 ~vi~I~G~gGiGKTtLa~~v~~~ 296 (1007)
.+|+|.|+.|+||||+|+.++..
T Consensus 3 ~~I~ieG~~GsGKtT~~~~L~~~ 25 (196)
T PRK13975 3 KFIVFEGIDGSGKTTQAKLLAEK 25 (196)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 68999999999999999999993
No 494
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=90.30 E-value=0.99 Score=42.70 Aligned_cols=36 Identities=19% Similarity=0.067 Sum_probs=26.5
Q ss_pred EEEEEcCCCChHHHHHHHHHhhhhcccCCCceEEEE
Q 001843 275 VIALIGKAGSGKTTLARIVYNRVYVKRHFTKRAWVH 310 (1007)
Q Consensus 275 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~ 310 (1007)
.+.|.|..|.|||+.+..+............++|++
T Consensus 2 ~~~i~~~~G~GKT~~~~~~~~~~~~~~~~~~~lv~~ 37 (144)
T cd00046 2 DVLLAAPTGSGKTLAALLPILELLDSLKGGQVLVLA 37 (144)
T ss_pred CEEEECCCCCchhHHHHHHHHHHHhcccCCCEEEEc
Confidence 467999999999999988877533333455677775
No 495
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=90.28 E-value=0.43 Score=51.60 Aligned_cols=86 Identities=14% Similarity=0.153 Sum_probs=48.5
Q ss_pred EEEEEEcCCCChHHHHHHHHHhhhhcccCCCceEEEEecCCCCCCHHHHHHHHHHHHhhhhhhhccccCHHHHHHHHHHH
Q 001843 274 QVIALIGKAGSGKTTLARIVYNRVYVKRHFTKRAWVHIPIMSMVEDRDVLADILKQIDESLLKVEATLSAEELMWRITQA 353 (1007)
Q Consensus 274 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~l~~il~~l~~~~~~~~~~~~~~~l~~~l~~~ 353 (1007)
.+|.|.|..|.||||+++.+.+ .+.. ....+ +++.....+.... ..|+... ..........++..
T Consensus 81 GlilisG~tGSGKTT~l~all~--~i~~-~~~~i-itiEdp~E~~~~~-----~~q~~v~------~~~~~~~~~~l~~~ 145 (264)
T cd01129 81 GIILVTGPTGSGKTTTLYSALS--ELNT-PEKNI-ITVEDPVEYQIPG-----INQVQVN------EKAGLTFARGLRAI 145 (264)
T ss_pred CEEEEECCCCCcHHHHHHHHHh--hhCC-CCCeE-EEECCCceecCCC-----ceEEEeC------CcCCcCHHHHHHHH
Confidence 6899999999999999998876 3322 12222 2232001111100 0011100 01112355667778
Q ss_pred cCCCcEEEEEeCcCccCchhhhh
Q 001843 354 LDDSTFLIVMENAEHQKSQVWDS 376 (1007)
Q Consensus 354 L~~kr~LlVlDdv~~~~~~~~~~ 376 (1007)
|+..+=.|+++++. +.+....
T Consensus 146 lR~~PD~i~vgEiR--~~e~a~~ 166 (264)
T cd01129 146 LRQDPDIIMVGEIR--DAETAEI 166 (264)
T ss_pred hccCCCEEEeccCC--CHHHHHH
Confidence 88888899999998 6654443
No 496
>cd01134 V_A-ATPase_A V/A-type ATP synthase catalytic subunit A. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria.
Probab=90.26 E-value=1.5 Score=48.68 Aligned_cols=48 Identities=21% Similarity=0.207 Sum_probs=34.7
Q ss_pred EEEEEEcCCCChHHHHHHHHHhhhhcccCCCceEEEEecCCCC-CCHHHHHHHHH
Q 001843 274 QVIALIGKAGSGKTTLARIVYNRVYVKRHFTKRAWVHIPIMSM-VEDRDVLADIL 327 (1007)
Q Consensus 274 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~-~~~~~~l~~il 327 (1007)
+.++|.|..|+|||+|++++++. .+-+.++++-++ +. ....+++.++-
T Consensus 158 qr~~I~G~~G~GKT~L~~~Iak~----~~~dvvVyv~iG--ERg~Ev~e~l~ef~ 206 (369)
T cd01134 158 GTAAIPGPFGCGKTVIQQSLSKY----SNSDIVIYVGCG--ERGNEMTEVLEEFP 206 (369)
T ss_pred CEEEEECCCCCChHHHHHHHHhC----CCCCEEEEEEeC--CChHHHHHHHHHHH
Confidence 68899999999999999999994 233567777776 43 34455555543
No 497
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=90.25 E-value=0.67 Score=49.74 Aligned_cols=84 Identities=17% Similarity=0.143 Sum_probs=47.6
Q ss_pred EEEEEEcCCCChHHHHH-HHHHhhhhcccCCCce-EEEEecCCCC-CCHHHHHHHHHHHHhhhhhhh-----cccc----
Q 001843 274 QVIALIGKAGSGKTTLA-RIVYNRVYVKRHFTKR-AWVHIPIMSM-VEDRDVLADILKQIDESLLKV-----EATL---- 341 (1007)
Q Consensus 274 ~vi~I~G~gGiGKTtLa-~~v~~~~~~~~~F~~~-~wv~~s~~~~-~~~~~~l~~il~~l~~~~~~~-----~~~~---- 341 (1007)
+-++|+|..|+|||+|| ..+.+. . +-+.+ +++-+. +. ....++.+++...-... .. ..++
T Consensus 70 Qr~~Ifg~~g~GKt~L~l~~i~~~--~--~~~v~~V~~~iG--er~~ev~e~~~~~~~~~~~~--~tvvv~~t~d~~~~~ 141 (274)
T cd01132 70 QRELIIGDRQTGKTAIAIDTIINQ--K--GKKVYCIYVAIG--QKASTVAQVVKTLEEHGAME--YTIVVAATASDPAPL 141 (274)
T ss_pred CEEEeeCCCCCCccHHHHHHHHHh--c--CCCeEEEEEecc--cchHHHHHHHHHHHhcCccc--eeEEEEeCCCCchhH
Confidence 77899999999999996 556662 2 23444 555555 44 34445555544321111 00 0111
Q ss_pred ------CHHHHHHHHHHHcCCCcEEEEEeCcC
Q 001843 342 ------SAEELMWRITQALDDSTFLIVMENAE 367 (1007)
Q Consensus 342 ------~~~~l~~~l~~~L~~kr~LlVlDdv~ 367 (1007)
..-...+.++. +++.+|||+||+.
T Consensus 142 r~~a~~~a~aiAE~fr~--~G~~Vlvl~DslT 171 (274)
T cd01132 142 QYLAPYTGCAMGEYFMD--NGKHALIIYDDLS 171 (274)
T ss_pred HHHHHHHHHHHHHHHHH--CCCCEEEEEcChH
Confidence 11223344443 5899999999986
No 498
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=90.24 E-value=0.62 Score=47.83 Aligned_cols=23 Identities=35% Similarity=0.468 Sum_probs=21.6
Q ss_pred EEEEEEcCCCChHHHHHHHHHhh
Q 001843 274 QVIALIGKAGSGKTTLARIVYNR 296 (1007)
Q Consensus 274 ~vi~I~G~gGiGKTtLa~~v~~~ 296 (1007)
..|+|.|..|+||||+|+.+++.
T Consensus 4 ~~IvieG~~GsGKsT~~~~L~~~ 26 (195)
T TIGR00041 4 MFIVIEGIDGAGKTTQANLLKKL 26 (195)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 78999999999999999999984
No 499
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=90.22 E-value=0.92 Score=47.77 Aligned_cols=37 Identities=30% Similarity=0.454 Sum_probs=28.9
Q ss_pred EEEEEEcCCCChHHHHHHHHHhhhhcccCCCceEEEEec
Q 001843 274 QVIALIGKAGSGKTTLARIVYNRVYVKRHFTKRAWVHIP 312 (1007)
Q Consensus 274 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s 312 (1007)
+++.|.|.+|+|||++|.+++.. ..+ .=..++|++..
T Consensus 17 ~~~li~G~~G~GKt~~~~~~~~~-~~~-~g~~~~y~s~e 53 (224)
T TIGR03880 17 HVIVVIGEYGTGKTTFSLQFLYQ-GLK-NGEKAMYISLE 53 (224)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH-HHh-CCCeEEEEECC
Confidence 89999999999999999998773 222 23467788765
No 500
>PRK06936 type III secretion system ATPase; Provisional
Probab=90.13 E-value=0.84 Score=52.45 Aligned_cols=84 Identities=18% Similarity=0.227 Sum_probs=50.0
Q ss_pred EEEEEEcCCCChHHHHHHHHHhhhhcccCCCceEEEEecCCCCC-CHHHHHHHHHHHHhhhhhhh-----ccc-------
Q 001843 274 QVIALIGKAGSGKTTLARIVYNRVYVKRHFTKRAWVHIPIMSMV-EDRDVLADILKQIDESLLKV-----EAT------- 340 (1007)
Q Consensus 274 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~-~~~~~l~~il~~l~~~~~~~-----~~~------- 340 (1007)
..++|+|..|.|||||.+.+++. .. -+.++++-++ +.. ...++....+..-+.. .. ..+
T Consensus 163 q~~~I~G~sG~GKStLl~~Ia~~--~~--~dv~V~~liG--ERgrEv~ef~~~~l~~~~l~--rtvvv~atsd~p~~~R~ 234 (439)
T PRK06936 163 QRMGIFAAAGGGKSTLLASLIRS--AE--VDVTVLALIG--ERGREVREFIESDLGEEGLR--KAVLVVATSDRPSMERA 234 (439)
T ss_pred CEEEEECCCCCChHHHHHHHhcC--CC--CCEEEEEEEc--cCcHHHHHHHHHHhcccccc--eeEEEEECCCCCHHHHH
Confidence 78999999999999999999983 22 2456666666 433 3344443333221110 00 011
Q ss_pred ---cCHHHHHHHHHHHcCCCcEEEEEeCcC
Q 001843 341 ---LSAEELMWRITQALDDSTFLIVMENAE 367 (1007)
Q Consensus 341 ---~~~~~l~~~l~~~L~~kr~LlVlDdv~ 367 (1007)
...-...+.++. +++++|+++||+-
T Consensus 235 ~a~~~a~tiAEyfrd--~G~~Vll~~DslT 262 (439)
T PRK06936 235 KAGFVATSIAEYFRD--QGKRVLLLMDSVT 262 (439)
T ss_pred HHHHHHHHHHHHHHH--cCCCEEEeccchh
Confidence 112223444443 5899999999985
Done!