Query 001843
Match_columns 1007
No_of_seqs 415 out of 4553
Neff 8.7
Searched_HMMs 29240
Date Tue Mar 26 16:18:45 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/001843.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1140-1144//hhsearch_pdb/001843hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 1.0 1 1 401.4 24.8 313 194-593 131-473 (549)
2 3sfz_A APAF-1, apoptotic pepti 1.0 1 1 359.8 26.1 307 188-591 121-452 (1249)
3 1vt4_I APAF-1 related killer D 1.0 1 1 331.6 18.6 291 191-585 128-437 (1221)
4 1z6t_A APAF-1, apoptotic prote 1.0 1 1 301.9 25.1 303 189-589 122-450 (591)
5 3rgz_A Protein brassinosteroid 1.0 1 1 213.3 16.6 270 611-902 267-550 (768)
6 3rgz_A Protein brassinosteroid 1.0 1 1 208.0 16.5 338 613-974 294-715 (768)
7 4ecn_A Leucine-rich repeat pro 1.0 1 1 207.3 18.1 334 611-974 446-838 (876)
8 4eco_A Uncharacterized protein 1.0 1 1 206.8 15.3 335 611-975 204-599 (636)
9 4ecn_A Leucine-rich repeat pro 1.0 1 1 206.3 17.6 323 631-975 444-818 (876)
10 3vq2_A TLR4, TOLL-like recepto 1.0 1 1 205.2 19.5 59 912-973 494-555 (606)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=1.00 E-value=1 Score=401.38 Aligned_cols=313 Identities=15% Similarity=0.200 Sum_probs=259.1
Q ss_pred EECCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCC
Q ss_conf 72502199999841278888886555432101332101367764234789876899988880111026322467899996
Q 001843 194 LGLERQVKELLHVLIPEHHGINDADVSTKKIVDGYEYARSSGEEITELPIPEQEGGGDALSNEEEESGRCQSSSTTTTTT 273 (1007)
Q Consensus 194 vGr~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (1007)
|||+.++++|+++|..... ...
T Consensus 131 ~GR~~~~~~l~~~L~~~~~------------------------------------------------~~~---------- 152 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMCD------------------------------------------------LDS---------- 152 (549)
T ss_dssp CCCHHHHHHHHHHHHHHTT------------------------------------------------SSS----------
T ss_pred CCCHHHHHHHHHHHHCCCC------------------------------------------------CCC----------
T ss_conf 7841799999998725157------------------------------------------------896----------
Q ss_pred EEEEEECCCCCHHHHHHHHHHH--HHHCCCCCCCEEEEEECCCCCC--CHHHHHHHHHHHHHHHHH----HHCCCCCHHH
Q ss_conf 8999993899808899999985--3200037882699992689888--989999999999755332----1102338999
Q 001843 274 QVIALIGKAGSGKTTLARIVYN--RVYVKRHFTKRAWVHIPIMSMV--EDRDVLADILKQIDESLL----KVEATLSAEE 345 (1007)
Q Consensus 274 ~vi~I~G~gGiGKTtLA~~v~~--~~~v~~~F~~~~wv~vs~~~~~--~~~~~l~~il~~l~~~~~----~~~~~~~~~~ 345 (1007)
++|+|+||||+||||||+++|+ +.+++.+|++++||+++ +.+ +...+++.|+.+++.... ......+...
T Consensus 153 ~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs--~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~ 230 (549)
T 2a5y_B 153 FFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDS--GTAPKSTFDLFTDILLMLKSEDDLLNFPSVEHVTSVV 230 (549)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECC--CCSTTHHHHHHHHHHHHHTTTSCCTTCCCCTTCCHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEC--CCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHH
T ss_conf 28999869999889999999984069874669957999978--9878799999999999985375534555533146999
Q ss_pred HHHHHHHHCCCC-CEEEEEECCCCCCCHHHHHHCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCEEEECCCCCHHHHHHH
Q ss_conf 999999881998-3799992967557000112102237779994899984887311223378520366499997999999
Q 001843 346 LMWRITQALDDS-TFLIVMENAEHQKSQVWDSFLGKLCSFTQCGKIIITTSSTEDFVEPLGAAFSTLHVPGLGKNESWEL 424 (1007)
Q Consensus 346 l~~~l~~~L~~k-r~LiVlDdv~~~~~~~w~~l~~l~~~~~~gskIiiTTR~~~~va~~~~~~~~~~~l~~L~~~ea~~L 424 (1007)
+...+++.|.++ |||||||||| +...+ .+ +. .+||+||||||+.. ++..++....+|+|++|++++||+|
T Consensus 231 l~~~l~~~L~~~kr~LlVLDdv~--~~~~~-~~---~~--~~gs~ilvTTR~~~-v~~~~~~~~~~~~l~~L~~~ea~~L 301 (549)
T 2a5y_B 231 LKRMICNALIDRPNTLFVFDDVV--QEETI-RW---AQ--ELRLRCLVTTRDVE-ISNAASQTCEFIEVTSLEIDECYDF 301 (549)
T ss_dssp HHHHHHHHHTTSTTEEEEEEEEC--CHHHH-HH---HH--HTTCEEEEEESBGG-GGGGCCSCEEEEECCCCCHHHHHHH
T ss_pred HHHHHHHHHCCCCCEEEEEECCC--CCHHH-CC---CC--CCCCEEEEECCCHH-HHHHCCCCCEEEECCCCCHHHHHHH
T ss_conf 99999999768984899997999--71441-54---32--69988999749779-9997088973898999898999999
Q ss_pred HHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHC-C------CCHHHHHHHCC
Q ss_conf 9963012443235799489999999999819972699999977517999968999999870-3------30236642038
Q 001843 425 FLKKARIAEDVLQSRSSELIKLKKQILNICDGLPLRVVLLAGLLSTKQPSYEEWSKVIERA-N------GDNLVALCYQD 497 (1007)
Q Consensus 425 f~~~a~~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~lg~~L~~~~~~~~~w~~~l~~l-~------~~~~l~~sy~~ 497 (1007)
|.+.+|.... ++.+++++.+|+++|+|+||||+++|+.|+.+ .++|...+... + +..++.+||+.
T Consensus 302 f~~~a~~~~~-----~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~---~w~~~~~l~~~l~~~~~~~i~~~l~~Sy~~ 373 (549)
T 2a5y_B 302 LEAYGMPMPV-----GEKEEDVLNKTIELSSGNPATLMMFFKSCEPK---TFEKMAQLNNKLESRGLVGVECITPYSYKS 373 (549)
T ss_dssp HHHTSCCCC-------CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSS---SHHHHHHHHHHHHHHCSSTTCCCSSSSSSS
T ss_pred HHHHHCCCCC-----CHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCC---HHHHHHHHHHHHHCCCHHHHHHHHHCCCCC
T ss_conf 9987448998-----55689999999999599839999999984434---489998757876136477789897516202
Q ss_pred CCCCCHHHHH-----------HHCCCCCCCCCCHHHHHHHHHHC--CCCCCCCCC-CCCHHHHHHHHHHHHHHCCCEEEE
Q ss_conf 9547633666-----------41257898502235799998852--657899885-689999999999999844234788
Q 001843 498 LPAQVKPCIL-----------YMGLFPREYEIPVRRLIHLWCAE--GFAPPDLDL-IASEEDLAEMYLEELVTRHMIQVI 563 (1007)
Q Consensus 498 L~~~~k~cfl-----------~la~fp~~~~i~~~~Li~~Wiae--g~i~~~~~~-~~~~~~~~~~~l~~Lv~rsLiq~~ 563 (1007)
||+++|.||+ |||+||+++.|+ +.+|+|+ ||+ .... +.+.+++++ ||++|++|||+++.
T Consensus 374 L~~~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~----i~~w~a~~~G~i--~~~~~~~~~~~~~~-~l~~L~~rsLl~~~ 446 (549)
T 2a5y_B 374 LAMALQRCVEVLSDEDRSALAFAVVMPPGVDIP----VKLWSCVIPVDI--CSNEEEQLDDEVAD-RLKRLSKRGALLSG 446 (549)
T ss_dssp HHHHHHHHHHTSCHHHHHHTTGGGSSCTTCCEE----HHHHHHHSCC---------CCCTHHHHH-HHHHTTTBSSCSEE
T ss_pred CCHHHHHHHHCCCHHHHHHHHHEEEECCCCEEE----EEEEEEECCCEE--CCCCCCCCHHHHHH-HHHHHHHCCCEEEE
T ss_conf 267999997526522336743235608997666----533110135500--26778999999999-99999875883671
Q ss_pred EECCCCCCCEEECCHHHHHHHHHHHHHCCE
Q ss_conf 424899920599198999999964200170
Q 001843 564 RWRLDGSPKTCCMPGVLYDILRPKAEDIGF 593 (1007)
Q Consensus 564 ~~~~~g~~~~~~iHdlv~dl~~~~~~~e~f 593 (1007)
..+ ...+|+|||+||++++.++.++++
T Consensus 447 ~~~---~~~~~~mHdlv~~~a~~~~~~~~~ 473 (549)
T 2a5y_B 447 KRM---PVLTFKIDHIIHMFLKHVVDAQTI 473 (549)
T ss_dssp ECS---SSCEEECCHHHHHHHHTTSCTHHH
T ss_pred CCC---CCEEEEECHHHHHHHHHHHHHHHH
T ss_conf 479---804999676999999999889899
No 2
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=1.00 E-value=1 Score=359.77 Aligned_cols=307 Identities=19% Similarity=0.274 Sum_probs=247.9
Q ss_pred CCCCCEEECCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCC
Q ss_conf 67751772502199999841278888886555432101332101367764234789876899988880111026322467
Q 001843 188 EDETDVLGLERQVKELLHVLIPEHHGINDADVSTKKIVDGYEYARSSGEEITELPIPEQEGGGDALSNEEEESGRCQSSS 267 (1007)
Q Consensus 188 ~~~~~~vGr~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (1007)
.....||||++++++|.++|..... ..
T Consensus 121 ~~~~~~vgR~~~~~~l~~~l~~~~~-------------------------------------------------~~---- 147 (1249)
T 3sfz_A 121 QRPVIFVTRKKLVHAIQQKLWKLNG-------------------------------------------------EP---- 147 (1249)
T ss_dssp CCCSSCCCCHHHHHHHHHHHHTTTT-------------------------------------------------SC----
T ss_pred CCCCEECCHHHHHHHHHHHHHHCCC-------------------------------------------------CC----
T ss_conf 9986412579999999999861358-------------------------------------------------87----
Q ss_pred CCCCCCEEEEEECCCCCHHHHHHHHHHHHHHC-CCCC-CCEEEEEECCCCCC--CHHHHHHHHHHHHHHHHHH-HCCCCC
Q ss_conf 89999689999938998088999999853200-0378-82699992689888--9899999999997553321-102338
Q 001843 268 TTTTTTQVIALIGKAGSGKTTLARIVYNRVYV-KRHF-TKRAWVHIPIMSMV--EDRDVLADILKQIDESLLK-VEATLS 342 (1007)
Q Consensus 268 ~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~v-~~~F-~~~~wv~vs~~~~~--~~~~~l~~il~~l~~~~~~-~~~~~~ 342 (1007)
++|+|+||||+||||||+++|++.++ ..+| +.++|++++ +.. .....+..++..+...... .....+
T Consensus 148 ------~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 219 (1249)
T 3sfz_A 148 ------GWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIG--KQDKSGLLMKLQNLCMRLDQEESFSQRLPLN 219 (1249)
T ss_dssp ------EEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECC--SCCHHHHHHHHHHHHHHHTTTCTTCSSCCSS
T ss_pred ------CEEEEEECCCCCHHHHHHHHHCCHHHHHHHCCCEEEEEEEC--CCCCHHHHHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf ------77999918988888999998607567886278817999978--8572679999999999865530333478877
Q ss_pred HHHHHHHHHHHCCCC--CEEEEEECCCCCCCHHHHHHCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCEEEECCC-CCHH
Q ss_conf 999999999881998--3799992967557000112102237779994899984887311223378520366499-9979
Q 001843 343 AEELMWRITQALDDS--TFLIVMENAEHQKSQVWDSFLGKLCSFTQCGKIIITTSSTEDFVEPLGAAFSTLHVPG-LGKN 419 (1007)
Q Consensus 343 ~~~l~~~l~~~L~~k--r~LiVlDdv~~~~~~~w~~l~~l~~~~~~gskIiiTTR~~~~va~~~~~~~~~~~l~~-L~~~ 419 (1007)
.+.+...++..+.++ |+||||||+| +...|..+ ++||+||||||++. ++..+......+++.+ |+++
T Consensus 220 ~~~~~~~l~~~l~~~~~~~LlvlDd~~--~~~~~~~~-------~~~~~ilvTtR~~~-~~~~~~~~~~~~~~~~~l~~~ 289 (1249)
T 3sfz_A 220 IEEAKDRLRVLMLRKHPRSLLILDDVW--DPWVLKAF-------DNQCQILLTTRDKS-VTDSVMGPKHVVPVESGLGRE 289 (1249)
T ss_dssp HHHHHHHHHHHTSSSSCSCEEEEESCC--CHHHHTTT-------CSSCEEEEEESSTT-TTTTCCSCBCCEECCSSCCHH
T ss_pred HHHHHHHHHHHHHCCCCCEEEEEECCC--CHHHHHHH-------CCCCEEEEECCCHH-HHHHHCCCCEEEEECCCCCHH
T ss_conf 789999999997356787899995679--97788763-------68978999927789-987634884379825888878
Q ss_pred HHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHCC-------------
Q ss_conf 9999999630124432357994899999999998199726999999775179999689999998703-------------
Q 001843 420 ESWELFLKKARIAEDVLQSRSSELIKLKKQILNICDGLPLRVVLLAGLLSTKQPSYEEWSKVIERAN------------- 486 (1007)
Q Consensus 420 ea~~Lf~~~a~~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~lg~~L~~~~~~~~~w~~~l~~l~------------- 486 (1007)
++++||...++.. ++.+++++.+|+++|+|+||||+++|++|+.++. .|...++.+.
T Consensus 290 ~a~~l~~~~~~~~-------~~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~~---~~~~~l~~l~~~~~~~~~~~~~~ 359 (1249)
T 3sfz_A 290 KGLEILSLFVNMK-------KEDLPAEAHSIIKECKGSPLVVSLIGALLRDFPN---RWAYYLRQLQNKQFKRIRKSSSY 359 (1249)
T ss_dssp HHHHHHHHHHTSC-------STTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSSS---CHHHHHHHHHSCCCCCSSCTTCT
T ss_pred HHHHHHHHHHCCC-------HHHCCHHHHHHHHHHCCCHHHHHHHHHHHHCCHH---HHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 8999999865798-------1348388999999849977999999998624805---79999999865044303465564
Q ss_pred ----CCHHHHHHHCCCCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEE
Q ss_conf ----3023664203895476336664125789850223579999885265789988568999999999999984423478
Q 001843 487 ----GDNLVALCYQDLPAQVKPCILYMGLFPREYEIPVRRLIHLWCAEGFAPPDLDLIASEEDLAEMYLEELVTRHMIQV 562 (1007)
Q Consensus 487 ----~~~~l~~sy~~L~~~~k~cfl~la~fp~~~~i~~~~Li~~Wiaeg~i~~~~~~~~~~~~~~~~~l~~Lv~rsLiq~ 562 (1007)
+..++.+||+.|+++.|.||+|||+||+++.|++..++.+|.++ ++.++.++++|+++||++.
T Consensus 360 ~~~~~~~~l~~s~~~L~~~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~-------------~~~~~~~l~~L~~~sl~~~ 426 (1249)
T 3sfz_A 360 DYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLWDLE-------------TEEVEDILQEFVNKSLLFC 426 (1249)
T ss_dssp THHHHHHHHHHHHHTSCTTTHHHHHHGGGSCTTCCEEHHHHHHHHTCC-------------HHHHHHHHHHHHHTTSCEE
T ss_pred CHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCEECHHHHHHHHCCC-------------HHHHHHHHHHHHHCCCEEE
T ss_conf 467799999989986799999999972813799751899999885898-------------8899999999974463389
Q ss_pred EEECCCCCCCEEECCHHHHHHHHHHHHHC
Q ss_conf 84248999205991989999999642001
Q 001843 563 IRWRLDGSPKTCCMPGVLYDILRPKAEDI 591 (1007)
Q Consensus 563 ~~~~~~g~~~~~~iHdlv~dl~~~~~~~e 591 (1007)
.. +++..+|+||+++|++++..+.++
T Consensus 427 ~~---~~~~~~~~~h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 427 NR---NGKSFCYYLHDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp EE---SSSSEEEECCHHHHHHHHHHTGGG
T ss_pred EC---CCCCEEEEECHHHHHHHHHHHHHH
T ss_conf 63---798118996689999987450678
No 3
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=1.00 E-value=1 Score=331.55 Aligned_cols=291 Identities=18% Similarity=0.252 Sum_probs=230.0
Q ss_pred CCEEECCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCC
Q ss_conf 51772502199999841278888886555432101332101367764234789876899988880111026322467899
Q 001843 191 TDVLGLERQVKELLHVLIPEHHGINDADVSTKKIVDGYEYARSSGEEITELPIPEQEGGGDALSNEEEESGRCQSSSTTT 270 (1007)
Q Consensus 191 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (1007)
...|||+.++++|.++|.... ..
T Consensus 128 k~~VGRe~eLeeL~elL~~~d--------------------------------------------------~~------- 150 (1221)
T 1vt4_I 128 KYNVSRLQPYLKLRQALLELR--------------------------------------------------PA------- 150 (1221)
T ss_dssp CSCCCCHHHHHHHHHHHHHCC--------------------------------------------------SS-------
T ss_pred CCCCCCHHHHHHHHHHHHCCC--------------------------------------------------CC-------
T ss_conf 877892899999999974358--------------------------------------------------97-------
Q ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCCCC-EEEEEECCCCCCCHHHHHHHHHHHHHHHHH---HH-C----CCC
Q ss_conf 99689999938998088999999853200037882-699992689888989999999999755332---11-0----233
Q 001843 271 TTTQVIALIGKAGSGKTTLARIVYNRVYVKRHFTK-RAWVHIPIMSMVEDRDVLADILKQIDESLL---KV-E----ATL 341 (1007)
Q Consensus 271 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~v~~~F~~-~~wv~vs~~~~~~~~~~l~~il~~l~~~~~---~~-~----~~~ 341 (1007)
++|+|+||||+||||||+++|++.+++.+|+. ++|++++ +.++...++..++..++.... .. . ...
T Consensus 151 ---RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs--~~~d~~~IL~~Ll~lL~~i~~~~~~~~d~~~~ip~ 225 (1221)
T 1vt4_I 151 ---KNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLK--NCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKL 225 (1221)
T ss_dssp ---CEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECC--CSSSHHHHHHHHHHHHHHHCSSSTTTSCCCSSHHH
T ss_pred ---EEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEC--CCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
T ss_conf ---1899976999667999999997149887489938999828--99999999999999986227210220013467999
Q ss_pred CHHHHHHHHHHHC---CCCCEEEEEECCCCCCCHHHHHHCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCEEEECC----
Q ss_conf 8999999999881---998379999296755700011210223777999489998488731122337852036649----
Q 001843 342 SAEELMWRITQAL---DDSTFLIVMENAEHQKSQVWDSFLGKLCSFTQCGKIIITTSSTEDFVEPLGAAFSTLHVP---- 414 (1007)
Q Consensus 342 ~~~~l~~~l~~~L---~~kr~LiVlDdv~~~~~~~w~~l~~l~~~~~~gskIiiTTR~~~~va~~~~~~~~~~~l~---- 414 (1007)
+.+.+...+++.| .++|+||||||+| +.+.|+.+ ..||+||||||++. ++..+... ..+.++
T Consensus 226 ~leeL~e~Lr~lL~~l~~KRvLLVLDDVw--d~eqLe~f-------~pGSRILVTTRd~~-Va~~l~g~-~vy~LeL~d~ 294 (1221)
T 1vt4_I 226 RIHSIQAELRRLLKSKPYENCLLVLLNVQ--NAKAWNAF-------NLSCKILLTTRFKQ-VTDFLSAA-TTTHISLDHH 294 (1221)
T ss_dssp HHHHHHHHHHHHHHHSTTSSCEEEEESCC--CHHHHHHH-------HSSCCEEEECSCSH-HHHHHHHH-SSCEEEECSS
T ss_pred CHHHHHHHHHHHHHHHCCCCEEEEEECCC--HHHHHHHH-------CCCEEEEEECCCHH-HHHHCCCC-EEEEECCCCC
T ss_conf 99999999999998504788799871868--18999864-------79829999443737-99866897-0899468655
Q ss_pred --CCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHH
Q ss_conf --999799999999630124432357994899999999998199726999999775179999689999998703302366
Q 001843 415 --GLGKNESWELFLKKARIAEDVLQSRSSELIKLKKQILNICDGLPLRVVLLAGLLSTKQPSYEEWSKVIERANGDNLVA 492 (1007)
Q Consensus 415 --~L~~~ea~~Lf~~~a~~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~lg~~L~~~~~~~~~w~~~l~~l~~~~~l~ 492 (1007)
+|+.+|||+||.+..... . +++..++ |+|+||||+++|++|+.+..+..+|... ....+..++.
T Consensus 295 dL~LS~eEA~eLF~~~~g~~-~---------eeL~~eI---CgGLPLALkLaGs~Lr~k~~s~eeW~~~-~~~~I~aaLe 360 (1221)
T 1vt4_I 295 SMTLTPDEVKSLLLKYLDCR-P---------QDLPREV---LTTNPRRLSIIAESIRDGLATWDNWKHV-NCDKLTTIIE 360 (1221)
T ss_dssp SSCCCHHHHHHHHHHHHCCC-T---------TTHHHHH---CCCCHHHHHHHHHHHHHSCSSHHHHHHC-SCHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHCCCC-H---------HHHHHHH---HCCCHHHHHHHHHHHHCCCCCHHHHHCC-CHHHHHHHHH
T ss_conf 68969999999999974998-8---------9999999---6989999999999984889979998669-8618999999
Q ss_pred HHHCCCCCCC-HHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCC
Q ss_conf 4203895476-336664125789850223579999885265789988568999999999999984423478842489992
Q 001843 493 LCYQDLPAQV-KPCILYMGLFPREYEIPVRRLIHLWCAEGFAPPDLDLIASEEDLAEMYLEELVTRHMIQVIRWRLDGSP 571 (1007)
Q Consensus 493 ~sy~~L~~~~-k~cfl~la~fp~~~~i~~~~Li~~Wiaeg~i~~~~~~~~~~~~~~~~~l~~Lv~rsLiq~~~~~~~g~~ 571 (1007)
+||+.|+++. |.||++||+||+++.|+...++.+|+++| ++.++.+|++|+++||++.. +..
T Consensus 361 lSYd~Lp~eelK~cFL~LAIFPed~~I~~elLa~LW~aeG------------eedAe~~L~eLvdRSLLq~d-----~~~ 423 (1221)
T 1vt4_I 361 SSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVI------------KSDVMVVVNKLHKYSLVEKQ-----PKE 423 (1221)
T ss_dssp HHHHHSCTTHHHHHHHHTTSSCTTSCEEHHHHHHHHCSSC------------SHHHHHHHHHHHTSSSSSBC-----SSS
T ss_pred HHHHHCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCC------------HHHHHHHHHHHHHHCCEEEE-----CCC
T ss_conf 9998488999999999971779999877999998766778------------89999999999961988986-----899
Q ss_pred CEEECCHHHHHHHH
Q ss_conf 05991989999999
Q 001843 572 KTCCMPGVLYDILR 585 (1007)
Q Consensus 572 ~~~~iHdlv~dl~~ 585 (1007)
.+|+|||+++++..
T Consensus 424 ~rYrMHDLllELr~ 437 (1221)
T 1vt4_I 424 STISIPSIYLELKV 437 (1221)
T ss_dssp SEEBCCCHHHHHHH
T ss_pred CEEEEHHHHHHHHC
T ss_conf 98986099999856
No 4
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=1.00 E-value=1 Score=301.89 Aligned_cols=303 Identities=18% Similarity=0.286 Sum_probs=231.8
Q ss_pred CCCCEEECCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCC
Q ss_conf 77517725021999998412788888865554321013321013677642347898768999888801110263224678
Q 001843 189 DETDVLGLERQVKELLHVLIPEHHGINDADVSTKKIVDGYEYARSSGEEITELPIPEQEGGGDALSNEEEESGRCQSSST 268 (1007)
Q Consensus 189 ~~~~~vGr~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (1007)
....+|||+.++..+.++|..... ..
T Consensus 122 ~~~~~vGR~~~l~~L~~~L~~~~~-------------------------------------------------~~----- 147 (591)
T 1z6t_A 122 RPVVFVTRKKLVNAIQQKLSKLKG-------------------------------------------------EP----- 147 (591)
T ss_dssp CCSSCCCCHHHHHHHHHHHTTSTT-------------------------------------------------SC-----
T ss_pred CCCEECCCHHHHHHHHHHHHCCCC-------------------------------------------------CC-----
T ss_conf 987140529999999999860368-------------------------------------------------88-----
Q ss_pred CCCCCEEEEEECCCCCHHHHHHHHHHHHHHC-CCCC-CCEEEEEECCCCCCCHHHHHHHHHH---HHHHHH-HHHCCCCC
Q ss_conf 9999689999938998088999999853200-0378-8269999268988898999999999---975533-21102338
Q 001843 269 TTTTTQVIALIGKAGSGKTTLARIVYNRVYV-KRHF-TKRAWVHIPIMSMVEDRDVLADILK---QIDESL-LKVEATLS 342 (1007)
Q Consensus 269 ~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~v-~~~F-~~~~wv~vs~~~~~~~~~~l~~il~---~l~~~~-~~~~~~~~ 342 (1007)
++|+|+||||+||||||.+++++..+ ..+| +.++|++++ .. +...++..+.. .++... .......+
T Consensus 148 -----~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~--~~-~~~~~~~~l~~l~~~l~~~~~~~~~~~~~ 219 (591)
T 1z6t_A 148 -----GWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVG--KQ-DKSGLLMKLQNLCTRLDQDESFSQRLPLN 219 (591)
T ss_dssp -----EEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEE--SC-CHHHHHHHHHHHHHHHCSSCCSCSSCCCS
T ss_pred -----CEEEEECCCCCCHHHHHHHHHHCHHHHHHHCCCCEEEEECC--CC-CHHHHHHHHHHHHHHHCCCCCCCCCCCCC
T ss_conf -----46999769989889999999835568885289965999778--77-66889999999999850355655679988
Q ss_pred HHHHHHHHHHHCCC--CCEEEEEECCCCCCCHHHHHHCCCCCCCCCCCEEEEECCCCCCCCCCCCCCC-EEEECCCCCHH
Q ss_conf 99999999988199--8379999296755700011210223777999489998488731122337852-03664999979
Q 001843 343 AEELMWRITQALDD--STFLIVMENAEHQKSQVWDSFLGKLCSFTQCGKIIITTSSTEDFVEPLGAAF-STLHVPGLGKN 419 (1007)
Q Consensus 343 ~~~l~~~l~~~L~~--kr~LiVlDdv~~~~~~~w~~l~~l~~~~~~gskIiiTTR~~~~va~~~~~~~-~~~~l~~L~~~ 419 (1007)
.+.+...++..+.+ +++||||||+| +...+.. + ..+++||||||+.. ++..+.... .+..+++|+.+
T Consensus 220 ~~~~~~~l~~~l~~~~~~~LLVLDdv~--~~~~l~~---l----~~~~~ilvTsR~~~-~~~~~~~~~~~v~~l~~L~~~ 289 (591)
T 1z6t_A 220 IEEAKDRLRILMLRKHPRSLLILDDVW--DSWVLKA---F----DSQCQILLTTRDKS-VTDSVMGPKYVVPVESSLGKE 289 (591)
T ss_dssp HHHHHHHHHHHHHHTCTTCEEEEEEEC--CHHHHHT---T----CSSCEEEEEESCGG-GGTTCCSCEEEEECCSSCCHH
T ss_pred HHHHHHHHHHHHCCCCCCEEEEEECCC--CHHHHHH---H----CCCCEEEEECCCCH-HHHHCCCCCEEEECCCCCCHH
T ss_conf 999999999997067998699985899--8799987---6----37986999898817-777348982686158899989
Q ss_pred HHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHCC-------------
Q ss_conf 9999999630124432357994899999999998199726999999775179999689999998703-------------
Q 001843 420 ESWELFLKKARIAEDVLQSRSSELIKLKKQILNICDGLPLRVVLLAGLLSTKQPSYEEWSKVIERAN------------- 486 (1007)
Q Consensus 420 ea~~Lf~~~a~~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~lg~~L~~~~~~~~~w~~~l~~l~------------- 486 (1007)
++++||...++.... ...+.+.+|+++|+|+||||+++|++++.+. ..|...++.+.
T Consensus 290 ea~~L~~~~~~~~~~-------~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~---~~w~~~l~~l~~~~~~~~~~~~~~ 359 (591)
T 1z6t_A 290 KGLEILSLFVNMKKA-------DLPEQAHSIIKECKGSPLVVSLIGALLRDFP---NRWEYYLKQLQNKQFKRIRKSSSY 359 (591)
T ss_dssp HHHHHHHHHHTSCGG-------GSCTHHHHHHHHHTTCHHHHHHHHHHHHHST---TCHHHHHHHHHSCCCCCSSCCCSS
T ss_pred HHHHHHHHHHCCCCC-------CCCHHHHHHHHHHCCCCHHHHHHHHHHHCCC---HHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 999999987189831-------0459999999995898379999999984484---359999999988689876511465
Q ss_pred ----CCHHHHHHHCCCCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEE
Q ss_conf ----3023664203895476336664125789850223579999885265789988568999999999999984423478
Q 001843 487 ----GDNLVALCYQDLPAQVKPCILYMGLFPREYEIPVRRLIHLWCAEGFAPPDLDLIASEEDLAEMYLEELVTRHMIQV 562 (1007)
Q Consensus 487 ----~~~~l~~sy~~L~~~~k~cfl~la~fp~~~~i~~~~Li~~Wiaeg~i~~~~~~~~~~~~~~~~~l~~Lv~rsLiq~ 562 (1007)
+..++..||+.|+++.|.||+++|+||+++.|+...++..|.++ .+.+..++++|++++|++.
T Consensus 360 ~~~~l~~~l~~s~~~L~~~~~~~l~~la~f~~~~~i~~~~l~~l~~~~-------------~~~~~~~l~~L~~~~Ll~~ 426 (591)
T 1z6t_A 360 DYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDME-------------TEEVEDILQEFVNKSLLFC 426 (591)
T ss_dssp CCHHHHHHHHHHHHTSCTTTHHHHHHGGGCCTTCCEEHHHHHHHHTCC-------------HHHHHHHHHHHHHTTSSEE
T ss_pred CHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCC-------------HHHHHHHHHHHHHCCCEEE
T ss_conf 437899999999986899999999974556799850899999996658-------------8999999999985958688
Q ss_pred EEECCCCCCCEEECCHHHHHHHHHHHH
Q ss_conf 842489992059919899999996420
Q 001843 563 IRWRLDGSPKTCCMPGVLYDILRPKAE 589 (1007)
Q Consensus 563 ~~~~~~g~~~~~~iHdlv~dl~~~~~~ 589 (1007)
.. ++....|+||++++++++....
T Consensus 427 ~~---~~~~~~~~~H~lv~~~~~~~~~ 450 (591)
T 1z6t_A 427 DR---NGKSFRYYLHDLQVDFLTEKNC 450 (591)
T ss_dssp EE---ETTEEEEECCHHHHHHHHHHTG
T ss_pred EC---CCCCCEEEECHHHHHHHHHHHH
T ss_conf 54---8985679976899999986535
No 5
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=1.00 E-value=1 Score=213.27 Aligned_cols=270 Identities=17% Similarity=0.053 Sum_probs=158.0
Q ss_pred CCCCEEEEEEECCCCC-CCCCC-CC-CCCCEEEEEECCCCCCCCCHHHHHHHCCCCCCCCCCCCCEEEECCCCCCCCCCC
Q ss_conf 9997489999559998-88777-67-775009999525567998012343310233448988301999268878986787
Q 001843 611 PKFAVRRLAANLGSNS-FPYSS-LL-SWRLHSYLVFDSRIRGTPAKQIGIILGKCISKRRLGMLKVLDLEGVYKPMLTNN 687 (1007)
Q Consensus 611 ~~~~~rrlsi~~~~~~-~~~~~-~~-~~~LRsL~l~~~~~~~~~~~~~~~~l~~~f~~~~l~~LrvLdL~~~~~~~~~lp 687 (1007)
...+.+.+.+..+... ..+.. .. +++|+.|.+.++...+ ..+..| ..++.|++|++++|.+.+ .+|
T Consensus 267 ~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~--------~~p~~~--~~l~~L~~L~L~~n~l~~-~ip 335 (768)
T 3rgz_A 267 PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYG--------AVPPFF--GSCSLLESLALSSNNFSG-ELP 335 (768)
T ss_dssp CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEE--------CCCGGG--GGCTTCCEEECCSSEEEE-ECC
T ss_pred CCCCCCEEECCCCCCCCCCCHHHHHHCCCCCEEECCCCCCCC--------CCCHHH--HCCCCCCEEECCCCCCCC-CCC
T ss_conf 368789897917855772588888446868899896896778--------423677--558776677897885257-379
Q ss_pred CC-CCCCCCCCEEECCCCCCC-CCCCCCCCCC-CCCEEEECCCCCC-CCCCCCC-----CCCEECCCCCCCCCCCCCCCC
Q ss_conf 00-069876858851367775-3483232687-9989861587432-1344223-----335020332123343434664
Q 001843 688 NA-LGRLPFLEYLGLRSTFID-SLPDSTPILF-CLATLDVSHTKVQ-RLPYAFW-----PSRHLYLNWIFLATNVFRHPQ 758 (1007)
Q Consensus 688 ~~-i~~L~~Lr~L~L~~~~i~-~LP~~i~~L~-~L~~Ldl~~~~l~-~lP~~i~-----~Lr~L~l~~~~~~~~~~~lp~ 758 (1007)
.. ++++.+|++|++++|.+. .+|..+.++. +|++|++++|.+. .+|..+. .|++|++. +|.....+|.
T Consensus 336 ~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~---~n~l~~~~p~ 412 (768)
T 3rgz_A 336 MDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQ---NNGFTGKIPP 412 (768)
T ss_dssp HHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECC---SSEEEEECCG
T ss_pred HHHHHCCCCCCEEECCCCCCCCCCCHHHHHHHCCCCEEECCCCCCCCCCCHHHHHCCCCCCCEEECC---CCCCCCCCCH
T ss_conf 7887248888788484784376230989863227719986278747876766653324776189897---7846542487
Q ss_pred CCCCCCCCCCCCCEEECCCCCCCHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCC
Q ss_conf 35676877542303637875437376513899994985306888403689889975158997758985259997792223
Q 001843 759 FVKWETSLQTLWGLCIKADEVQSLDYFRRLTSLRKLGLKCSSTTSTSLKKEIIGAVLQLSELHSLKLICETPSYLPLLEM 838 (1007)
Q Consensus 759 ~i~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~L~i~~~~~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l 838 (1007)
.++++++|+.|+..... ..+..+..++.+++|+.|.+..+. -...++ ..+..+++|+.|+++++.........+
T Consensus 413 ~l~~l~~L~~L~Ls~N~-l~~~~p~~l~~l~~L~~L~L~~n~-l~~~~p----~~~~~l~~L~~L~L~~N~l~~~~p~~l 486 (768)
T 3rgz_A 413 TLSNCSELVSLHLSFNY-LSGTIPSSLGSLSKLRDLKLWLNM-LEGEIP----QELMYVKTLETLILDFNDLTGEIPSGL 486 (768)
T ss_dssp GGGGCTTCCEEECCSSE-EESCCCGGGGGCTTCCEEECCSSC-CCSCCC----GGGGGCTTCCEEECCSSCCCSCCCGGG
T ss_pred HHHCCCCCCEEECCCCC-CCCCCCHHHHCCCCCCEEECCCCC-CCCCCC----HHHCCCCCCEEEEECCCCCCCCCCHHH
T ss_conf 77568987989895884-668546777449988989897881-547189----788287773299901995137588788
Q ss_pred CCCCCCCEEEECCCC--CCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCEEEEECCCC
Q ss_conf 379998578824558--9999576578999915999972204779967112587774999526875
Q 001843 839 AEHYKLQKLYLSGHL--PPNSVIGDRSFPPNVVTLTLSQLRLEYDPMPILGRLRQLKILRLFGGSY 902 (1007)
Q Consensus 839 ~~~~~L~~L~L~g~~--~~lp~~~i~~~l~~L~~L~L~~~~l~~~~l~~l~~Lp~L~~L~L~~~~~ 902 (1007)
..+++|+.|+++++. ..+|. |+.. +++|+.|+|++|.+....+..++.+++|+.|++++|..
T Consensus 487 ~~l~~L~~L~L~~N~l~~~~p~-~~~~-l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l 550 (768)
T 3rgz_A 487 SNCTNLNWISLSNNRLTGEIPK-WIGR-LENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLF 550 (768)
T ss_dssp GGCTTCCEEECCSSCCCSCCCG-GGGG-CTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEE
T ss_pred HCCCCCCEEECCCCCCCCCCCH-HHHC-CCCCCEEECCCCCCCCCCCHHHCCCCCCCEEECCCCCC
T ss_conf 1699899897539951896876-8856-89999898978943374887770889899898988846
No 6
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=1.00 E-value=1 Score=208.00 Aligned_cols=338 Identities=16% Similarity=0.049 Sum_probs=201.3
Q ss_pred CCEEEEEEECCCCC-CCCC-CCCCCCCEEEEEECCCCCCCCCHHHHHHHCCCCCCCCCCCCCEEEECCCCCCCCCCCCCC
Q ss_conf 97489999559998-8877-767775009999525567998012343310233448988301999268878986787000
Q 001843 613 FAVRRLAANLGSNS-FPYS-SLLSWRLHSYLVFDSRIRGTPAKQIGIILGKCISKRRLGMLKVLDLEGVYKPMLTNNNAL 690 (1007)
Q Consensus 613 ~~~rrlsi~~~~~~-~~~~-~~~~~~LRsL~l~~~~~~~~~~~~~~~~l~~~f~~~~l~~LrvLdL~~~~~~~~~lp~~i 690 (1007)
.+.+.+.+..+... ..+. ...+++|++|.+.++...+. +....| ..++.|++|++++|.+.+ .+|..+
T Consensus 294 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~-------ip~~~l--~~l~~L~~L~Ls~n~l~~-~~p~~l 363 (768)
T 3rgz_A 294 DTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGE-------LPMDTL--LKMRGLKVLDLSFNEFSG-ELPESL 363 (768)
T ss_dssp TTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEE-------CCHHHH--TTCTTCCEEECCSSEEEE-CCCTTH
T ss_pred CCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCC-------CCHHHH--HCCCCCCEEECCCCCCCC-CCCHHH
T ss_conf 8688998968967784236775587766778978852573-------797887--248888788484784376-230989
Q ss_pred CCCC-CCCEEECCCCCCC-CCCCCCCC--CCCCCEEEECCCCCC-CCCCCCCCC---CEECCCCCCCCCCCCCCCCCCCC
Q ss_conf 6987-6858851367775-34832326--879989861587432-134422333---50203321233434346643567
Q 001843 691 GRLP-FLEYLGLRSTFID-SLPDSTPI--LFCLATLDVSHTKVQ-RLPYAFWPS---RHLYLNWIFLATNVFRHPQFVKW 762 (1007)
Q Consensus 691 ~~L~-~Lr~L~L~~~~i~-~LP~~i~~--L~~L~~Ldl~~~~l~-~lP~~i~~L---r~L~l~~~~~~~~~~~lp~~i~~ 762 (1007)
+++. +|++|++++|.+. .+|..++. +.+|++|++++|.+. .+|..+..+ ++|++. +|......|..+++
T Consensus 364 ~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls---~N~l~~~~p~~l~~ 440 (768)
T 3rgz_A 364 TNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLS---FNYLSGTIPSSLGS 440 (768)
T ss_dssp HHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECC---SSEEESCCCGGGGG
T ss_pred HHHHCCCCEEECCCCCCCCCCCHHHHHCCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECC---CCCCCCCCCHHHHC
T ss_conf 863227719986278747876766653324776189897784654248777568987989895---88466854677744
Q ss_pred CCCCCCCCCEEECCCCCCCHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCC
Q ss_conf 68775423036378754373765138999949853068884036898899751589977589852599977922233799
Q 001843 763 ETSLQTLWGLCIKADEVQSLDYFRRLTSLRKLGLKCSSTTSTSLKKEIIGAVLQLSELHSLKLICETPSYLPLLEMAEHY 842 (1007)
Q Consensus 763 L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~L~i~~~~~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~ 842 (1007)
+++|+.|....+. .....+..++.+++|+.|.+..+. -...++ ..+..+++|+.|+++++.........+..++
T Consensus 441 l~~L~~L~L~~n~-l~~~~p~~~~~l~~L~~L~L~~N~-l~~~~p----~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~ 514 (768)
T 3rgz_A 441 LSKLRDLKLWLNM-LEGEIPQELMYVKTLETLILDFND-LTGEIP----SGLSNCTNLNWISLSNNRLTGEIPKWIGRLE 514 (768)
T ss_dssp CTTCCEEECCSSC-CCSCCCGGGGGCTTCCEEECCSSC-CCSCCC----GGGGGCTTCCEEECCSSCCCSCCCGGGGGCT
T ss_pred CCCCCEEECCCCC-CCCCCCHHHCCCCCCEEEEECCCC-CCCCCC----HHHHCCCCCCEEECCCCCCCCCCCHHHHCCC
T ss_conf 9988989897881-547189788287773299901995-137588----7881699899897539951896876885689
Q ss_pred CCCEEEECCCC--CCCCCCCCCCCCCCCEEEEEEEEECCCCCC-------------------------------------
Q ss_conf 98578824558--999957657899991599997220477996-------------------------------------
Q 001843 843 KLQKLYLSGHL--PPNSVIGDRSFPPNVVTLTLSQLRLEYDPM------------------------------------- 883 (1007)
Q Consensus 843 ~L~~L~L~g~~--~~lp~~~i~~~l~~L~~L~L~~~~l~~~~l------------------------------------- 883 (1007)
+|+.|+++++. ..+|. .+.. +++|+.|+|++|.+....+
T Consensus 515 ~L~~L~L~~N~l~~~~p~-~l~~-l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 592 (768)
T 3rgz_A 515 NLAILKLSNNSFSGNIPA-ELGD-CRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGN 592 (768)
T ss_dssp TCCEEECCSSCCEEECCG-GGGG-CTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEE
T ss_pred CCCEEECCCCCCCCCCCH-HHCC-CCCCCEEECCCCCCCCCCCHHHHCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 999898978943374887-7708-89899898988846882795786042122320134542111134443222233222
Q ss_pred ---------------------------------CCCCCCCCCCEEEEECCCCCCCCEEECCCCCCCCCEEEECCCCCCCC
Q ss_conf ---------------------------------71125877749995268758970244289999886899624799864
Q 001843 884 ---------------------------------PILGRLRQLKILRLFGGSYTGEEMSCSSGEFPNLLVLKLWKLNRLRQ 930 (1007)
Q Consensus 884 ---------------------------------~~l~~Lp~L~~L~L~~~~~~~~~l~~~~~~fp~L~~L~L~~~~~l~~ 930 (1007)
+.++.+++|+.|+|++|...+ .++...+.++.|+.|.|+++.-...
T Consensus 593 ~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g-~ip~~l~~l~~L~~L~Ls~N~l~g~ 671 (768)
T 3rgz_A 593 LLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSG-YIPKEIGSMPYLFILNLGHNDISGS 671 (768)
T ss_dssp EEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBS-CCCGGGGGCTTCCEEECCSSCCCSC
T ss_pred CCCCCCCCCHHHHCCCCCCCCCCCCCEECCCCCHHHHCCCCCCEEECCCCCCCC-CCCHHHHCCCCCCEEECCCCCCCCC
T ss_conf 100135563232002321100113310046274334033566579785880155-5877884141578784868803887
Q ss_pred EEECCCCCCCCCEEEEECCCCCC--CCCCCCCCCCCCCEEEECCCC
Q ss_conf 58768977653475750367878--886730000376689923698
Q 001843 931 WRIKEGAMPCLRQLEIRSCGYLV--PPTGLKHVTSSLREFLLTNMP 974 (1007)
Q Consensus 931 l~~~~~~~p~L~~L~i~~C~~L~--lp~~l~~L~~~Lk~L~i~~~~ 974 (1007)
++...+.+++|+.|++++|. +. +|..+..+ ++|+.|++++++
T Consensus 672 ip~~l~~L~~L~~LdLs~N~-l~g~ip~~l~~l-~~L~~L~ls~N~ 715 (768)
T 3rgz_A 672 IPDEVGDLRGLNILDLSSNK-LDGRIPQAMSAL-TMLTEIDLSNNN 715 (768)
T ss_dssp CCGGGGGCTTCCEEECCSSC-CEECCCGGGGGC-CCCSEEECCSSE
T ss_pred CCHHHHCCCCCCEEECCCCC-CCCCCCHHHHCC-CCCCEEECCCCC
T ss_conf 89678477789989897880-238688677578-878978796881
No 7
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=1.00 E-value=1 Score=207.26 Aligned_cols=334 Identities=15% Similarity=0.093 Sum_probs=168.3
Q ss_pred CCCCEEEEEEECCCCCC------------------CCCC-C--CCCCCEEEEEECCCCCCCCCHHHHHHHCCCCCCCCCC
Q ss_conf 99974899995599988------------------8777-6--7775009999525567998012343310233448988
Q 001843 611 PKFAVRRLAANLGSNSF------------------PYSS-L--LSWRLHSYLVFDSRIRGTPAKQIGIILGKCISKRRLG 669 (1007)
Q Consensus 611 ~~~~~rrlsi~~~~~~~------------------~~~~-~--~~~~LRsL~l~~~~~~~~~~~~~~~~l~~~f~~~~l~ 669 (1007)
...+.+.|.+..+.... ++.. . .+++|+.|.+..+...+ .++..| ..++
T Consensus 446 ~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~--------~iP~~l--~~L~ 515 (876)
T 4ecn_A 446 RLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMT--------QLPDFL--YDLP 515 (876)
T ss_dssp GCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCC--------SCCGGG--GGCS
T ss_pred CCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCEEECCCCCCCC--------CCHHHH--HCCC
T ss_conf 699987897968867887465322332222224458744402559997789871898875--------273877--3799
Q ss_pred CCCEEEECCCC-CCCCCCCCCCCCCC-------CCCEEECCCCCCCCCCC--CCCCCCCCCEEEECCCCCCCCCCCCCCC
Q ss_conf 30199926887-89867870006987-------68588513677753483--2326879989861587432134422333
Q 001843 670 MLKVLDLEGVY-KPMLTNNNALGRLP-------FLEYLGLRSTFIDSLPD--STPILFCLATLDVSHTKVQRLPYAFWPS 739 (1007)
Q Consensus 670 ~LrvLdL~~~~-~~~~~lp~~i~~L~-------~Lr~L~L~~~~i~~LP~--~i~~L~~L~~Ldl~~~~l~~lP~~i~~L 739 (1007)
.|++|++++|. +.+..+|..++++. +|++|+|++|.+..+|. .++++++|++|++++|.+..+| .+..+
T Consensus 516 ~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp-~~~~L 594 (876)
T 4ecn_A 516 ELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLE-AFGTN 594 (876)
T ss_dssp SCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCCBCC-CCCTT
T ss_pred CCCEEECCCCCCCCCCCCHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCH-HHCCC
T ss_conf 98999896898765664617787523301556883199822894776187235515898898989799825621-22479
Q ss_pred ---CEECCCCCCCCCCCCCCCCCCCCCCC-CCCCCCEEECCCCCCCHHHHHCCC--CCCEEEEEECC-CC-CHHHHHHHH
Q ss_conf ---50203321233434346643567687-754230363787543737651389--99949853068-88-403689889
Q 001843 740 ---RHLYLNWIFLATNVFRHPQFVKWETS-LQTLWGLCIKADEVQSLDYFRRLT--SLRKLGLKCSS-TT-STSLKKEII 811 (1007)
Q Consensus 740 ---r~L~l~~~~~~~~~~~lp~~i~~L~~-L~~L~~~~~~~~~~~~~~~l~~L~--~L~~L~i~~~~-~~-~~~l~~~~~ 811 (1007)
++|++. +|... .+|..+.++++ |+.|...... . ...+..++.+. +|+.|.+..+. .. ...+.
T Consensus 595 ~~L~~L~Ls---~N~l~-~lp~~l~~l~~~L~~L~Ls~N~-L-~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~---- 664 (876)
T 4ecn_A 595 VKLTDLKLD---YNQIE-EIPEDFCAFTDQVEGLGFSHNK-L-KYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNIS---- 664 (876)
T ss_dssp SEESEEECC---SSCCS-CCCTTSCEECTTCCEEECCSSC-C-CSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCS----
T ss_pred CCCEEEECC---CCCCC-CCHHHHHHCCCCCCEEECCCCC-C-CCCCHHHHCCCCCCCCEEECCCCCCCCCCCCCH----
T ss_conf 850079871---87125-0358775251149899984997-8-747644522556777889770884788643200----
Q ss_pred HHHH--CCCCCCEEEEEECCCCCCCCCC-CCCCCCCCEEEECCCC-CCCCCCCCCCCC-------CCCEEEEEEEEECCC
Q ss_conf 9751--5899775898525999779222-3379998578824558-999957657899-------991599997220477
Q 001843 812 GAVL--QLSELHSLKLICETPSYLPLLE-MAEHYKLQKLYLSGHL-PPNSVIGDRSFP-------PNVVTLTLSQLRLEY 880 (1007)
Q Consensus 812 ~~l~--~l~~L~~L~l~~~~~~~~~~~~-l~~~~~L~~L~L~g~~-~~lp~~~i~~~l-------~~L~~L~L~~~~l~~ 880 (1007)
..+. .+.+|+.|+++++.... .... +..+++|+.|.++++. ..+|. ++.... ++|+.|+|++|.+.
T Consensus 665 ~~l~~~~~~~L~~L~Ls~N~L~~-lp~~~~~~l~~L~~L~Ls~N~L~~ip~-~~~~~~~~~l~nl~~L~~L~Ls~N~L~- 741 (876)
T 4ecn_A 665 CSMDDYKGINASTVTLSYNEIQK-FPTELFATGSPISTIILSNNLMTSIPE-NSLKPKDGNYKNTYLLTTIDLRFNKLT- 741 (876)
T ss_dssp SCTTTCCCCCEEEEECCSSCCCS-CCHHHHHTTCCCSEEECCSCCCSCCCT-TSSSCTTSCCTTGGGCCEEECCSSCCC-
T ss_pred HHHCCCCCCCCCEEECCCCCCCC-CCHHHHCCCCCCCEEECCCCCCCCCCH-HHHCCCCCCCCCCCCCCEEECCCCCCC-
T ss_conf 00001357976889831996886-597887138988999898996885496-784555334321487158988899786-
Q ss_pred CCCCCCC--CCCCCCEEEEECCCCCCCCEEECCCCCCCCCEEEECCCC------CCCCEEECCCCCCCCCEEEEECCCCC
Q ss_conf 9967112--587774999526875897024428999988689962479------98645876897765347575036787
Q 001843 881 DPMPILG--RLRQLKILRLFGGSYTGEEMSCSSGEFPNLLVLKLWKLN------RLRQWRIKEGAMPCLRQLEIRSCGYL 952 (1007)
Q Consensus 881 ~~l~~l~--~Lp~L~~L~L~~~~~~~~~l~~~~~~fp~L~~L~L~~~~------~l~~l~~~~~~~p~L~~L~i~~C~~L 952 (1007)
.....+. .+++|+.|+|++|...+ ++.....+++|+.|.|++++ -...++...+.+++|+.|++++|. +
T Consensus 742 ~lp~~l~~~~l~~L~~L~Ls~N~L~~--lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~-L 818 (876)
T 4ecn_A 742 SLSDDFRATTLPYLSNMDVSYNCFSS--FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSND-I 818 (876)
T ss_dssp CCCGGGSTTTCTTCCEEECCSSCCSS--CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSC-C
T ss_pred CCHHHHHHCCCCCCCEEEECCCCCCC--CCHHHHCCCCCCEEECCCCCCCCCCCCCCCCHHHHHCCCCCCEEECCCCC-C
T ss_conf 65277624427986989908997876--10566159998899887997766563244486888369987889887997-8
Q ss_pred C-CCCCCCCCCCCCCEEEECCCC
Q ss_conf 8-886730000376689923698
Q 001843 953 V-PPTGLKHVTSSLREFLLTNMP 974 (1007)
Q Consensus 953 ~-lp~~l~~L~~~Lk~L~i~~~~ 974 (1007)
. +|..+ . ++|+.|++++|+
T Consensus 819 ~~Ip~~l--~-~~L~~LdLs~N~ 838 (876)
T 4ecn_A 819 RKVDEKL--T-PQLYILDIADNP 838 (876)
T ss_dssp CBCCSCC--C-SSSCEEECCSCT
T ss_pred CCCCHHH--C-CCCCEEECCCCC
T ss_conf 7408766--2-877889997998
No 8
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=1.00 E-value=1 Score=206.80 Aligned_cols=335 Identities=13% Similarity=0.081 Sum_probs=224.6
Q ss_pred CCCCEEEEEEECCCCCC------------------CCCC-C--CCCCCEEEEEECCCCCCCCCHHHHHHHCCCCCCCCCC
Q ss_conf 99974899995599988------------------8777-6--7775009999525567998012343310233448988
Q 001843 611 PKFAVRRLAANLGSNSF------------------PYSS-L--LSWRLHSYLVFDSRIRGTPAKQIGIILGKCISKRRLG 669 (1007)
Q Consensus 611 ~~~~~rrlsi~~~~~~~------------------~~~~-~--~~~~LRsL~l~~~~~~~~~~~~~~~~l~~~f~~~~l~ 669 (1007)
...+.+.|.+..+.... .+.. . .+++|++|.+.++...+ .++..| ..++
T Consensus 204 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~--------~~p~~l--~~l~ 273 (636)
T 4eco_A 204 RLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLT--------KLPTFL--KALP 273 (636)
T ss_dssp GCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCS--------SCCTTT--TTCS
T ss_pred CCCCCCEEECCCCCCCCCCCCCCCCCCCCCHHCCCCCHHHHHCCCCCCCEEEECCCCCCC--------CCHHHH--HCCC
T ss_conf 564787898868823664232212222210010248632200446878889804885776--------283888--3499
Q ss_pred CCCEEEECCCC-CCCCCCCCCCCCC------CCCCEEECCCCCCCCCCC--CCCCCCCCCEEEECCCCCC-CCCCCCCCC
Q ss_conf 30199926887-8986787000698------768588513677753483--2326879989861587432-134422333
Q 001843 670 MLKVLDLEGVY-KPMLTNNNALGRL------PFLEYLGLRSTFIDSLPD--STPILFCLATLDVSHTKVQ-RLPYAFWPS 739 (1007)
Q Consensus 670 ~LrvLdL~~~~-~~~~~lp~~i~~L------~~Lr~L~L~~~~i~~LP~--~i~~L~~L~~Ldl~~~~l~-~lP~~i~~L 739 (1007)
.|++|++++|. +.+..+|..++++ .+|++|++++|.++.+|. .++++++|++|++++|.+. .+| .+..+
T Consensus 274 ~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l 352 (636)
T 4eco_A 274 EMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSE 352 (636)
T ss_dssp SCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEE
T ss_pred CCCEEECCCCCCCCCCCCHHHHHHHHCCCCCCCCCEEECCCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCHH-HHCCC
T ss_conf 97889784798876653357887543046578888898979937766765554257888989690880705166-64788
Q ss_pred ---CEECCCCCCCCCCCCCCCCCCCCCCC-CCCCCCEEECCCCCCCHHHHHCC--CCCCEEEEEECCCCCHHHHHHHHHH
Q ss_conf ---50203321233434346643567687-75423036378754373765138--9999498530688840368988997
Q 001843 740 ---RHLYLNWIFLATNVFRHPQFVKWETS-LQTLWGLCIKADEVQSLDYFRRL--TSLRKLGLKCSSTTSTSLKKEIIGA 813 (1007)
Q Consensus 740 ---r~L~l~~~~~~~~~~~lp~~i~~L~~-L~~L~~~~~~~~~~~~~~~l~~L--~~L~~L~i~~~~~~~~~l~~~~~~~ 813 (1007)
++|++. ++. ...+|..+.++++ |+.|...... . ...+..++.+ ++|+.|.+..+. -....+ ..
T Consensus 353 ~~L~~L~L~---~N~-l~~lp~~l~~l~~~L~~L~Ls~N~-l-~~lp~~~~~~~l~~L~~L~Ls~N~-l~~~~p----~~ 421 (636)
T 4eco_A 353 IKLASLNLA---YNQ-ITEIPANFCGFTEQVENLSFAHNK-L-KYIPNIFDAKSVSVMSAIDFSYNE-IGSVDG----KN 421 (636)
T ss_dssp EEESEEECC---SSE-EEECCTTSEEECTTCCEEECCSSC-C-SSCCSCCCTTCSSCEEEEECCSSC-TTTTTT----CS
T ss_pred CCCCEEECC---CCC-CCCCCHHHHHHCCCCCEEECCCCC-C-CCCCHHHHHCCCCCCCEEECCCCC-CCCCCH----HH
T ss_conf 988989898---994-030337565102368689852982-7-544665533345766889774885-788652----44
Q ss_pred HH-------CCCCCCEEEEEECCCCCCCCCCCCCCCCCCEEEECCCC-CCCCCCCCCCCCC-------CCEEEEEEEEEC
Q ss_conf 51-------58997758985259997792223379998578824558-9999576578999-------915999972204
Q 001843 814 VL-------QLSELHSLKLICETPSYLPLLEMAEHYKLQKLYLSGHL-PPNSVIGDRSFPP-------NVVTLTLSQLRL 878 (1007)
Q Consensus 814 l~-------~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~g~~-~~lp~~~i~~~l~-------~L~~L~L~~~~l 878 (1007)
+. .+.+|+.|+++++.........+..+++|+.|.++++. ..+|. ++..... +|+.|+|++|.+
T Consensus 422 l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~-~~~~~~~~~~~~l~~L~~L~Ls~N~l 500 (636)
T 4eco_A 422 FDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPK-NSLKDENENFKNTYLLTSIDLRFNKL 500 (636)
T ss_dssp SCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCS-SSSEETTEECTTGGGCCEEECCSSCC
T ss_pred HCCCCCCCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCH-HHHCCCCCCCCCCCCCCEEECCCCCC
T ss_conf 20022011258988889772796686787887158988989897997887397-88404400122147733898969938
Q ss_pred CCCCCCCCC--CCCCCCEEEEECCCCCCCCEEECCCCCCCCCEEEECCC------CCCCCEEECCCCCCCCCEEEEECCC
Q ss_conf 779967112--58777499952687589702442899998868996247------9986458768977653475750367
Q 001843 879 EYDPMPILG--RLRQLKILRLFGGSYTGEEMSCSSGEFPNLLVLKLWKL------NRLRQWRIKEGAMPCLRQLEIRSCG 950 (1007)
Q Consensus 879 ~~~~l~~l~--~Lp~L~~L~L~~~~~~~~~l~~~~~~fp~L~~L~L~~~------~~l~~l~~~~~~~p~L~~L~i~~C~ 950 (1007)
. .....+. .+++|+.|+|++|...+ ++.....+++|+.|.++++ .-...++...+.+++|+.|++++|.
T Consensus 501 ~-~lp~~~~~~~l~~L~~L~Ls~N~l~~--ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~ 577 (636)
T 4eco_A 501 T-KLSDDFRATTLPYLVGIDLSYNSFSK--FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSND 577 (636)
T ss_dssp C-BCCGGGSTTTCTTCCEEECCSSCCSS--CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSC
T ss_pred C-CCCHHHHHCCCCCCCEEECCCCCCCC--CCHHHHCCCCCCEEECCCCCCCCCCCCCCCCHHHHHCCCCCCEEECCCCC
T ss_conf 8-16854534458876989898998877--68235308887878898886656673121273778569987889898994
Q ss_pred CCC-CCCCCCCCCCCCCEEEECCCCC
Q ss_conf 878-8867300003766899236981
Q 001843 951 YLV-PPTGLKHVTSSLREFLLTNMPS 975 (1007)
Q Consensus 951 ~L~-lp~~l~~L~~~Lk~L~i~~~~~ 975 (1007)
+. +|..+. ++|+.|++++++-
T Consensus 578 -l~~ip~~~~---~~L~~L~Ls~N~l 599 (636)
T 4eco_A 578 -IRKVNEKIT---PNISVLDIKDNPN 599 (636)
T ss_dssp -CCBCCSCCC---TTCCEEECCSCTT
T ss_pred -CCCCCHHHH---CCCCEEECCCCCC
T ss_conf -770597683---8678998769987
No 9
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=1.00 E-value=1 Score=206.27 Aligned_cols=323 Identities=14% Similarity=0.031 Sum_probs=237.8
Q ss_pred CCCCCCCEEEEEECCCCCCC--CCH-------HHHHHHCCCCCCC--CCCCCCEEEECCCCCCCCCCCCCCCCCCCCCEE
Q ss_conf 76777500999952556799--801-------2343310233448--988301999268878986787000698768588
Q 001843 631 SLLSWRLHSYLVFDSRIRGT--PAK-------QIGIILGKCISKR--RLGMLKVLDLEGVYKPMLTNNNALGRLPFLEYL 699 (1007)
Q Consensus 631 ~~~~~~LRsL~l~~~~~~~~--~~~-------~~~~~l~~~f~~~--~l~~LrvLdL~~~~~~~~~lp~~i~~L~~Lr~L 699 (1007)
...+++|++|.+.++...+. +.. .....++..+ . .++.|++|+|++|.+.+ .+|..++++.+|++|
T Consensus 444 l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l--~f~~L~~L~~L~Ls~N~l~~-~iP~~l~~L~~L~~L 520 (876)
T 4ecn_A 444 IQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEEL--SWSNLKDLTDVELYNCPNMT-QLPDFLYDLPELQSL 520 (876)
T ss_dssp GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCC--CGGGCTTCCEEEEESCTTCC-SCCGGGGGCSSCCEE
T ss_pred HHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHH--HHCCCCCCCEEECCCCCCCC-CCHHHHHCCCCCCEE
T ss_conf 756999878979688678874653223322222244587444--02559997789871898875-273877379998999
Q ss_pred ECCCCC-CCC--CCCCCCCCC-------CCCEEEECCCCCCCCCC--CCCCC---CEECCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 513677-753--483232687-------99898615874321344--22333---5020332123343434664356768
Q 001843 700 GLRSTF-IDS--LPDSTPILF-------CLATLDVSHTKVQRLPY--AFWPS---RHLYLNWIFLATNVFRHPQFVKWET 764 (1007)
Q Consensus 700 ~L~~~~-i~~--LP~~i~~L~-------~L~~Ldl~~~~l~~lP~--~i~~L---r~L~l~~~~~~~~~~~lp~~i~~L~ 764 (1007)
+|++|. ++. +|..++++. +|++|++++|.+..+|. .+..+ ++|++. +|... .+| .+++++
T Consensus 521 ~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls---~N~l~-~lp-~~~~L~ 595 (876)
T 4ecn_A 521 NIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCV---HNKVR-HLE-AFGTNV 595 (876)
T ss_dssp ECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECT---TSCCC-BCC-CCCTTS
T ss_pred ECCCCCCCCCCCCHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCHHHHHCCCCCCEEECC---CCCCC-CCH-HHCCCC
T ss_conf 8968987656646177875233015568831998228947761872355158988989897---99825-621-224798
Q ss_pred CCCCCCCEEECCCCCCCHHHHHCCCC-CCEEEEEECCCCCHHHHHHHHHHHHCCC--CCCEEEEEECCCCCCC--C-CCC
Q ss_conf 77542303637875437376513899-9949853068884036898899751589--9775898525999779--2-223
Q 001843 765 SLQTLWGLCIKADEVQSLDYFRRLTS-LRKLGLKCSSTTSTSLKKEIIGAVLQLS--ELHSLKLICETPSYLP--L-LEM 838 (1007)
Q Consensus 765 ~L~~L~~~~~~~~~~~~~~~l~~L~~-L~~L~i~~~~~~~~~l~~~~~~~l~~l~--~L~~L~l~~~~~~~~~--~-~~l 838 (1007)
+|+.|...... . ...+..+..+++ |+.|.+..+. ...++ ..+..++ +|+.|+++++...... + ..+
T Consensus 596 ~L~~L~Ls~N~-l-~~lp~~l~~l~~~L~~L~Ls~N~--L~~lp----~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l 667 (876)
T 4ecn_A 596 KLTDLKLDYNQ-I-EEIPEDFCAFTDQVEGLGFSHNK--LKYIP----NIFNAKSVYVMGSVDFSYNKIGSEGRNISCSM 667 (876)
T ss_dssp EESEEECCSSC-C-SCCCTTSCEECTTCCEEECCSSC--CCSCC----SCCCTTCSSCEEEEECCSSCTTTTSSSCSSCT
T ss_pred CCEEEECCCCC-C-CCCHHHHHHCCCCCCEEECCCCC--CCCCC----HHHHCCCCCCCCEEECCCCCCCCCCCCCHHHH
T ss_conf 50079871871-2-50358775251149899984997--87476----44522556777889770884788643200000
Q ss_pred C--CCCCCCEEEECCCC-CCCCCCCCC-CCCCCCEEEEEEEEECCCCCCCCCC-------CCCCCCEEEEECCCCCCCCE
Q ss_conf 3--79998578824558-999957657-8999915999972204779967112-------58777499952687589702
Q 001843 839 A--EHYKLQKLYLSGHL-PPNSVIGDR-SFPPNVVTLTLSQLRLEYDPMPILG-------RLRQLKILRLFGGSYTGEEM 907 (1007)
Q Consensus 839 ~--~~~~L~~L~L~g~~-~~lp~~~i~-~~l~~L~~L~L~~~~l~~~~l~~l~-------~Lp~L~~L~L~~~~~~~~~l 907 (1007)
. ..++|+.|+++++. ..+|. ++. . +++|+.|+|++|.+...+...+. ++++|+.|+|++|... .+
T Consensus 668 ~~~~~~~L~~L~Ls~N~L~~lp~-~~~~~-l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~--~l 743 (876)
T 4ecn_A 668 DDYKGINASTVTLSYNEIQKFPT-ELFAT-GSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLT--SL 743 (876)
T ss_dssp TTCCCCCEEEEECCSSCCCSCCH-HHHHT-TCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCC--CC
T ss_pred CCCCCCCCCEEECCCCCCCCCCH-HHHCC-CCCCCEEECCCCCCCCCCHHHHCCCCCCCCCCCCCCEEECCCCCCC--CC
T ss_conf 01357976889831996886597-88713-8988999898996885496784555334321487158988899786--65
Q ss_pred EECCC--CCCCCCEEEECCCCCCCCEEECCCCCCCCCEEEEECCC-----C-CC-CCCCCCCCCCCCCEEEECCCCC
Q ss_conf 44289--99988689962479986458768977653475750367-----8-78-8867300003766899236981
Q 001843 908 SCSSG--EFPNLLVLKLWKLNRLRQWRIKEGAMPCLRQLEIRSCG-----Y-LV-PPTGLKHVTSSLREFLLTNMPS 975 (1007)
Q Consensus 908 ~~~~~--~fp~L~~L~L~~~~~l~~l~~~~~~~p~L~~L~i~~C~-----~-L~-lp~~l~~L~~~Lk~L~i~~~~~ 975 (1007)
+.... .+++|+.|.|+++ .+..++...+.+++|+.|++++|+ + .. +|..+..+ ++|+.|.+++|.-
T Consensus 744 p~~l~~~~l~~L~~L~Ls~N-~L~~lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L-~~L~~L~Ls~N~L 818 (876)
T 4ecn_A 744 SDDFRATTLPYLSNMDVSYN-CFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTC-PSLIQLQIGSNDI 818 (876)
T ss_dssp CGGGSTTTCTTCCEEECCSS-CCSSCCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGC-SSCCEEECCSSCC
T ss_pred HHHHHHCCCCCCCEEEECCC-CCCCCCHHHHCCCCCCEEECCCCCCCCCCCCCCCCHHHHHCC-CCCCEEECCCCCC
T ss_conf 27762442798698990899-787610566159998899887997766563244486888369-9878898879978
No 10
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=1.00 E-value=1 Score=205.20 Aligned_cols=59 Identities=22% Similarity=0.152 Sum_probs=24.7
Q ss_pred CCCCCCCEEEECCCCCCCCE-EECCCCCCCCCEEEEECCCCCC-CCCCCCCCCC-CCCEEEECCC
Q ss_conf 99998868996247998645-8768977653475750367878-8867300003-7668992369
Q 001843 912 GEFPNLLVLKLWKLNRLRQW-RIKEGAMPCLRQLEIRSCGYLV-PPTGLKHVTS-SLREFLLTNM 973 (1007)
Q Consensus 912 ~~fp~L~~L~L~~~~~l~~l-~~~~~~~p~L~~L~i~~C~~L~-lp~~l~~L~~-~Lk~L~i~~~ 973 (1007)
..+++|+.|.++++ .+..+ +.....+++|+.|++++|. +. +|..+..+ + +|+.|.+.++
T Consensus 494 ~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~p~~~~~l-~~~L~~l~l~~N 555 (606)
T 3vq2_A 494 DTLHRLQLLNMSHN-NLLFLDSSHYNQLYSLSTLDCSFNR-IETSKGILQHF-PKSLAFFNLTNN 555 (606)
T ss_dssp TTCTTCCEEECCSS-CCSCEEGGGTTTCTTCCEEECTTSC-CCCEESCGGGS-CTTCCEEECCSC
T ss_pred CCCCCCCEEECCCC-CCCCCCHHHCCCCCCCCEEECCCCC-CCCCCHHHHHH-CCCCCEEECCCC
T ss_conf 54646898989899-5787487770688768988898983-76668767521-021748876289
Done!