BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 001844
(1006 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8BKN5|GCP5_MOUSE Gamma-tubulin complex component 5 OS=Mus musculus GN=Tubgcp5 PE=2
SV=2
Length = 1024
Score = 139 bits (351), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 105/365 (28%), Positives = 174/365 (47%), Gaps = 61/365 (16%)
Query: 631 VIMQECLTVYIKKQVDHIGKLILSNLMNDWRLMDELAVLRAIYLLGSGDLLQHFLTVIFN 690
+ ++ CL +I KQ H ++ L D+RL++ L +R +L+ GD + F T IF+
Sbjct: 685 LTLRSCLYPHIDKQYLHCCGNLMQTLKRDFRLVEYLQAMRNFFLMEGGDTMYDFYTSIFD 744
Query: 691 KLDKGENWDDDFELNTLLQESIRNSADGKLLSAPDALEVLITESHGSNSDEQPSMANLAS 750
K+ + E W + LN LQE++ D+L + I S N+ +
Sbjct: 745 KIREKETWQNVSFLNVQLQEAVGQRY------PEDSLRLSI------------SFENVDT 786
Query: 751 TPRKSHPHSFGIDGLDLLKFTYKVSWPLELIANMEAIKKYNQVMGFLLKVKRAKFALD-- 808
T +K + LD L +YKV WP++++ ++E K YNQV LL++K AK++LD
Sbjct: 787 TKKK-----LPVHILDGLTLSYKVPWPVDIVISVECQKIYNQVFLLLLQIKWAKYSLDVL 841
Query: 809 -------KARRWMWK----------------GRSLATNSHSHKRHWLVEQKLLHFVDAFH 845
A R K SL H R +L+ KL+HFV++ H
Sbjct: 842 LFGELGNAAERSQAKEDIPRDQDTPSQFGPPKESLRQQIH---RMFLLRVKLMHFVNSLH 898
Query: 846 QYVMDRVYHSAWRELCEGMAAAGSLDEVIEVHEAYLLSIQRQCFVAPDKLWALIASRINS 905
Y+M R+ HS E + A LD++I++H YL +I +C + +K+ + + I
Sbjct: 899 NYIMTRILHSTGLEFQHQVEEAKDLDQLIKIHYRYLSTIHDRCLLR-EKV-SFVKEAIMK 956
Query: 906 ILGLALEFYSIQQTLSSSGAVSAIKARCEMEVDRIEKQFDDCIVFLLRVLSFKLNVGHFP 965
+L LAL F + G + + A ++++E F +C +FL+ +L+ + G FP
Sbjct: 957 VLNLALMF--------AEGWQAGLGAWQMESIEKMESDFKNCHMFLVTILNKAVCRGSFP 1008
Query: 966 HLADL 970
HL L
Sbjct: 1009 HLESL 1013
Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 76/327 (23%), Positives = 132/327 (40%), Gaps = 34/327 (10%)
Query: 39 EVDLVRGVLQMLQGLSSSLFYWDESVRSFCVKTGIYVTHLSLKSVHVVLNQFI-YAATCL 97
E ++R L +L G+ +F + V+ I VTHL+ + VL Q Y
Sbjct: 267 ETQVIRETLWLLSGVKK-MFIFQLIDGKVTVRNNIIVTHLTHSCLRSVLEQIAAYGQVVF 325
Query: 98 KLVEISVTRVETTGRISSPT-------------LRAFSSAVSAWLKMFRGIALKEEMKIT 144
+L E + V S P R + + + A K F I KEE+
Sbjct: 326 RLQEF-IDEVMGHSSESLPPGNGPIPKKQPDAPFRTYQAFMWALYKYF--INFKEELTDI 382
Query: 145 ESNVGNTPTLLGLASSLSSLCSGGEYLLQIVDGAIPQVCFQFNMPVPAAQVAVHILDYLY 204
E V ++ T + LA ++ L L +++D + A H+L+ LY
Sbjct: 383 EKCVISSDTTITLAIVVNKLAPRLAQL-KVLDKVFSTGVAEVPPDTRNVVRASHLLNTLY 441
Query: 205 KKLDEVCLVQGGEVEEYQMLLHIFVGSLLPYIEGLDSWLFEGMLDDPYEEMFFYANRAIS 264
K + E V + +L ++V ++ PY++ +D W+ G L D E N+ +
Sbjct: 442 KAILEYDNVGEASEQTVSLLFSLWVETVRPYLQTVDEWIVHGHLWDGAREFIIQRNKNVP 501
Query: 265 VDKAEFWEKSYVLRQLQCWKLDAESSSLTSESSHVRETNEKRQNGLRESISLSSSVKGLQ 324
V+ +FW +Y L + S T V ++ + S ++
Sbjct: 502 VNHRDFWYATYTLYSV---------SEKTENEDKVSDSASASSGSDQGPSSRQHTMVS-- 550
Query: 325 ACPLFIKDIAKSIISAGKSLQLIRHVS 351
F+K + K II AGKS+QL+++++
Sbjct: 551 ----FLKPVLKQIIMAGKSMQLLKNLN 573
>sp|Q95K09|GCP5_MACFA Gamma-tubulin complex component 5 (Fragment) OS=Macaca fascicularis
GN=TUBGCP5 PE=2 SV=2
Length = 725
Score = 134 bits (338), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 103/365 (28%), Positives = 175/365 (47%), Gaps = 61/365 (16%)
Query: 631 VIMQECLTVYIKKQ-VDHIGKLILSNLMNDWRLMDELAVLRAIYLLGSGDLLQHFLTVIF 689
+ ++ CL +I KQ +D G L + L D+RL++ L +R +L+ GD + F T IF
Sbjct: 386 LTLRSCLYPHIDKQYLDCCGNL-MQTLKKDYRLVEYLQAMRNFFLMEGGDTMYDFYTSIF 444
Query: 690 NKLDKGENWDDDFELNTLLQESI--RNSADGKLLSAPDALEVLITESHGSNSDEQPSMAN 747
+K+ + E W + LN LQE++ R D LS S N
Sbjct: 445 DKIREKETWQNVSFLNVQLQEAVGQRYPEDSSRLSI--------------------SFEN 484
Query: 748 LASTPRKSHPHSFGIDGLDLLKFTYKVSWPLELIANMEAIKKYNQVMGFLLKVKRAKFAL 807
+ + +K H +DGL L +YKV WP++++ ++E K YNQV LL++K AK++L
Sbjct: 485 VDTAKKKLPVHI--LDGLTL---SYKVPWPVDIVISLECQKIYNQVFLLLLQIKWAKYSL 539
Query: 808 D--------------KARRWMWKGRSLATNSHSHK--------RHWLVEQKLLHFVDAFH 845
D + + + + + K R +L+ KL+HFV++ H
Sbjct: 540 DVLLFGELVSTAEKPRLQEGLVREQDTVAQFGPQKEPVRQQIHRMFLLRVKLMHFVNSLH 599
Query: 846 QYVMDRVYHSAWRELCEGMAAAGSLDEVIEVHEAYLLSIQRQCFVAPDKLWALIASRINS 905
Y+M R+ HS E + A LD++I++H YL +I +C + +K+ + + I
Sbjct: 600 NYIMTRILHSTGLEFQHQVEEAKDLDQLIKIHYRYLSTIHDRCLLR-EKV-SFVKEAIMK 657
Query: 906 ILGLALEFYSIQQTLSSSGAVSAIKARCEMEVDRIEKQFDDCIVFLLRVLSFKLNVGHFP 965
+L LAL F + G + + ++++E F +C +FL+ +L+ + G FP
Sbjct: 658 VLNLALMF--------ADGWQAGLGTWRMESIEKMESDFKNCHMFLVTILNKAVCRGSFP 709
Query: 966 HLADL 970
HL L
Sbjct: 710 HLESL 714
Score = 60.8 bits (146), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 72/297 (24%), Positives = 125/297 (42%), Gaps = 43/297 (14%)
Query: 73 IYVTHLSLKSVHVVLNQFI-YAATCLKLVEI--------SVTRVETTGRI----SSPTLR 119
I VTHL+ + VL Q Y +L + S + + +G + + R
Sbjct: 1 IIVTHLTHSCLRSVLEQIAAYGQVVFRLQQFIDEVMGHSSESMLPGSGSVPKKSTEAPFR 60
Query: 120 AFSSAVSAWLKMFRGIALKEEMKITESNVGN---TPTLLGLASSLSSLCSGGEYLLQIVD 176
+ + + A K F I+ KEE+ E + N T TL + L+ + + L ++
Sbjct: 61 TYQAFMWALYKYF--ISSKEELAEIEKCIINNDATITLAIVVDKLAPRLAQLKVLHKVFS 118
Query: 177 GAIPQVCFQFNMPVPAAQV--AVHILDYLYKKLDEVCLVQGGEVEEYQMLLHIFVGSLLP 234
+ +V P V A H+L+ LYK + E V + +L ++V ++ P
Sbjct: 119 TGVAEV------PPDTRNVVRASHLLNTLYKAILEYDDVGEASEQTVSLLFSLWVETVRP 172
Query: 235 YIEGLDSWLFEGMLDDPYEEMFFYANRAISVDKAEFWEKSYVLRQLQCWKLDAES-SSLT 293
Y++ +D W+ G L D E N+ + V+ +FW +Y L + + E S
Sbjct: 173 YLQTVDEWIVHGHLWDGAREFIIQRNKNVPVNHRDFWYATYTLYSVSEKTENEEKMSDNA 232
Query: 294 SESSHVRETNEKRQNGLRESISLSSSVKGLQACPLFIKDIAKSIISAGKSLQLIRHV 350
S SS + RQ+ + F+K + K II AGKS+QL++++
Sbjct: 233 SASSGSDQGPSSRQHTMVS----------------FLKPVLKQIIMAGKSMQLLKNL 273
>sp|Q96RT8|GCP5_HUMAN Gamma-tubulin complex component 5 OS=Homo sapiens GN=TUBGCP5 PE=1
SV=1
Length = 1024
Score = 132 bits (333), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 103/365 (28%), Positives = 171/365 (46%), Gaps = 61/365 (16%)
Query: 631 VIMQECLTVYIKKQ-VDHIGKLILSNLMNDWRLMDELAVLRAIYLLGSGDLLQHFLTVIF 689
+ ++ CL +I KQ +D G L + L D+RL++ L +R +L+ GD + F T IF
Sbjct: 685 LTLRSCLYPHIDKQYLDCCGNL-MQTLKKDYRLVEYLQAMRNFFLMEGGDTMYDFYTSIF 743
Query: 690 NKLDKGENWDDDFELNTLLQESI--RNSADGKLLSAPDALEVLITESHGSNSDEQPSMAN 747
+K+ + E W + LN LQE++ R D LS S N
Sbjct: 744 DKIREKETWQNVSFLNVQLQEAVGQRYPEDSSRLSI--------------------SFEN 783
Query: 748 LASTPRKSHPHSFGIDGLDLLKFTYKVSWPLELIANMEAIKKYNQVMGFLLKVKRAKFAL 807
+ + +K + LD L +YKV WP++++ ++E K YNQV LL++K AK++L
Sbjct: 784 VDTAKKK-----LPVHILDGLTLSYKVPWPVDIVISLECQKIYNQVFLLLLQIKWAKYSL 838
Query: 808 D---------KARRWMWK-------------GRSLATNSHSHKRHWLVEQKLLHFVDAFH 845
D A + K G R +L+ KL+HFV++ H
Sbjct: 839 DVLLFGELVSTAEKPRLKEGLIHEQDTVAQFGPQKEPVRQQIHRMFLLRVKLMHFVNSLH 898
Query: 846 QYVMDRVYHSAWRELCEGMAAAGSLDEVIEVHEAYLLSIQRQCFVAPDKLWALIASRINS 905
Y+M R+ HS E + A LD++I++H YL +I +C + +K+ + + I
Sbjct: 899 NYIMTRILHSTGLEFQHQVEEAKDLDQLIKIHYRYLSTIHDRCLLR-EKV-SFVKEAIMK 956
Query: 906 ILGLALEFYSIQQTLSSSGAVSAIKARCEMEVDRIEKQFDDCIVFLLRVLSFKLNVGHFP 965
+L LAL F + G + + ++++E F +C +FL+ +L+ + G FP
Sbjct: 957 VLNLALMF--------ADGWQAGLGTWRMESIEKMESDFKNCHMFLVTILNKAVCRGSFP 1008
Query: 966 HLADL 970
HL L
Sbjct: 1009 HLESL 1013
Score = 73.9 bits (180), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 81/332 (24%), Positives = 136/332 (40%), Gaps = 44/332 (13%)
Query: 38 NEVDLVRGVLQMLQGLSSSLFYWDESVRSFCVKTGIYVTHLSLKSVHVVLNQFI-YAATC 96
E ++R L +L G+ LF + V+ I VTHL+ + VL Q Y
Sbjct: 266 TETQVIRETLWLLSGVKK-LFIFQLIDGKVTVRNNIIVTHLTHSCLRSVLEQIAAYGQVV 324
Query: 97 LKLVEI--------SVTRVETTGRI----SSPTLRAFSSAVSAWLKMFRGIALKEEMKIT 144
+L E S + + +G + + R + + + A K F I+ KEE+
Sbjct: 325 FRLQEFIDEVMGHSSESMLPGSGSVPKKSTEAPFRTYQAFMWALYKYF--ISFKEELAEI 382
Query: 145 ESNVGNTPTLLGLA---SSLSSLCSGGEYLLQIVDGAIPQVCFQFNMPVPAAQV--AVHI 199
E + N T + LA L+ S + L ++ + +V P V A H+
Sbjct: 383 EKCIINNDTTITLAIVVDKLAPRLSQLKVLHKVFSTGVAEV------PPDTRNVVRASHL 436
Query: 200 LDYLYKKLDEVCLVQGGEVEEYQMLLHIFVGSLLPYIEGLDSWLFEGMLDDPYEEMFFYA 259
L+ LYK + E V + +L ++V ++ PY++ +D W+ G L D E
Sbjct: 437 LNTLYKAILEYDNVGEASEQTVSLLFSLWVETVRPYLQTVDEWIVHGHLWDGAREFIIQR 496
Query: 260 NRAISVDKAEFWEKSYVLRQLQCWKLDAESSSLTSESSHVRETNEKRQNGLRESISLSSS 319
N+ + V+ +FW +Y L + S E EK + S
Sbjct: 497 NKNVPVNHRDFWYATYTLYSV----------------SEKTENEEKMSDNASASSGSDQG 540
Query: 320 VKGLQACPL-FIKDIAKSIISAGKSLQLIRHV 350
Q + F+K + K II AGKS+QL++++
Sbjct: 541 PSSRQHTMVSFLKPVLKQIIMAGKSMQLLKNL 572
>sp|Q96RT7|GCP6_HUMAN Gamma-tubulin complex component 6 OS=Homo sapiens GN=TUBGCP6 PE=1
SV=3
Length = 1819
Score = 96.7 bits (239), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 89/357 (24%), Positives = 151/357 (42%), Gaps = 29/357 (8%)
Query: 631 VIMQECLTVYIKKQVDHIGKLILSNLMNDWRLMDELAVLRAIYLLGSGDLLQHFLTVIFN 690
V+M+ +T + + + K + + L LR L+ G+ Q ++F
Sbjct: 1482 VLMKRSITAPLAAHISLVNKAAVDYFFVELHLEAHYEALRHFLLMEDGEFAQSLSDLLFE 1541
Query: 691 KLDKGENWDDDFELNTLLQESIRNSADGKLLSAPDALEVLITESHGSNSDEQPSMANLAS 750
KL G+ + LN L+ S+ + A L HG + P +NL S
Sbjct: 1542 KLGAGQTPGE--LLNPLVLNSVLSKA-------------LQCSLHG----DTPHASNL-S 1581
Query: 751 TPRKSHPHSFGIDGLDLL---KFTYKVSWPLELIANMEAIKKYNQVMGFLLKVKRAKFAL 807
K P F + D+L + YKV WPL ++ + KY+ V FLL++K +AL
Sbjct: 1582 LALKYLPEVFAPNAPDVLSCLELRYKVDWPLNIVITEGCVSKYSGVFSFLLQLKLMMWAL 1641
Query: 808 DKARRWMWKGRSLA--TNSHSHKRHWLVEQKLLHFVDAFHQYVMDRVYHSAWRELCEGMA 865
+ + L+ S ++ L + ++ HFV Y+ +++ H W E +A
Sbjct: 1642 KDVCFHLKRTALLSHMAGSVQFRQLQLFKHEMQHFVKVIQGYIANQILHVTWCEFRARLA 1701
Query: 866 AAGSLDEVIEVHEAYLLSIQRQCFVAPDKLWALIASRINSILGLALEFYS--IQQTLSSS 923
G L+E+ H YL + + + A + + I+SI L L+F S I Q
Sbjct: 1702 TVGDLEEIQRAHAEYLHKAVFRGLLT--EKAAPVMNVIHSIFSLVLKFRSQLISQAWGPP 1759
Query: 924 GAVSAIKARCEMEVDRIEKQFDDCIVFLLRVLSFKLNVGHFPHLADLVTRINYNYFY 980
G + + + F FL +V++ +N G+ PHL D + RIN+N +Y
Sbjct: 1760 GGPRGAEHPNFALMQQSYNTFKYYSHFLFKVVTKLVNRGYQPHLEDFLLRINFNNYY 1816
Score = 75.1 bits (183), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 63/243 (25%), Positives = 104/243 (42%), Gaps = 18/243 (7%)
Query: 38 NEVDLVRGVLQMLQGLSSSLFYWDESVRSFCVKTGIYVTHLSLKSVHVVLNQFIYAATC- 96
E +LV+ VL +L G+ S+ F + ++F VK G++V+ S +S+ +L++ TC
Sbjct: 348 KECELVKDVLNVLIGVVSATFSLCQPAQAFVVKRGVHVSGASPESISSLLSEVAEYGTCY 407
Query: 97 LKLVEISVTRVETTGRISSPTLRAFSSAVSAWLKMFRGIALKEEMKITESNVGNTPTLLG 156
+L S+ V + +AF+S + +L+ +R L ++ +G LG
Sbjct: 408 TRLSHFSLQPVLDSLYSKGLVFQAFTSGLRRYLQYYRACVLSTPPTLSLLTIGFLFKKLG 467
Query: 157 LA-SSLSSLCSGGEYLLQIVDGAIPQVCFQFNMPVPAAQVAVHILDYLYKKLDEVCLVQG 215
L+ LC G L G P+ F V +L YLY++ C
Sbjct: 468 RQLRYLAELCGVGAVLPGTCGGG-PRAAF---------PTGVKLLSYLYQEALHNC---- 513
Query: 216 GEVEEYQMLLHIFVGSLLPYIEGLDSWLFEGMLDDPYEEMFFYANRA-ISVDKAEFWEKS 274
E Y +LL + S PY + W++ G+ D Y E N +S +W
Sbjct: 514 -SNEHYPVLLSLLKTSCEPYTRFIHDWVYSGVFRDAYGEFMIQVNHEYLSFRDKLYWTHG 572
Query: 275 YVL 277
YVL
Sbjct: 573 YVL 575
>sp|Q9UGJ1|GCP4_HUMAN Gamma-tubulin complex component 4 OS=Homo sapiens GN=TUBGCP4 PE=1
SV=1
Length = 667
Score = 83.6 bits (205), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 83/356 (23%), Positives = 143/356 (40%), Gaps = 23/356 (6%)
Query: 639 VYIKKQVDHIGKLILSNLMNDWRLMDE-------LAVLRAIYLLGSGDLLQHFLTVIFNK 691
V ++ VD I + +L W+LM E L +++ YLLG G+L Q F+ +
Sbjct: 323 VDFEQVVDRIRSTVAEHL---WKLMVEESDLLGQLKIIKDFYLLGRGELFQAFIDTAQHM 379
Query: 692 LDKGENWDDDFELNTLLQESIRNSADGKLLSAPDALEVLITESHGSNSDEQPSMANLAST 751
L + ++N Q+S P + E HG + A +
Sbjct: 380 LKTPPTAVTEHDVNVAFQQSAHKVLLDDDNLLPLLHLTI--EYHGKEHKADATQAREGPS 437
Query: 752 PRKSHPHSFGIDGLDLLKFTYKVSWPLELIANMEAIKKYNQVMGFLLKVKRAKFALDKAR 811
R++ P G L +YKV WPL ++ ++KYN V +LL V+R + L
Sbjct: 438 -RETSPREAPASGWAALGLSYKVQWPLHILFTPAVLEKYNVVFKYLLSVRRVQAELQHCW 496
Query: 812 RWMWKGRSLATNSHSHKRHWLVEQKLLHFVDAFHQYVMDRVYHSAWRELCEGMAAAGSLD 871
+ + L +N + W + + VD Y+ V S + +L + + +
Sbjct: 497 ALQMQRKHLKSNQTDAIK-WRLRNHMAFLVDNLQYYLQVDVLESQFSQLLHQINSTRDFE 555
Query: 872 EVIEVHEAYLLSIQRQCFVAPDKLWALIASRINSILGLALEFYSIQQTLSSSGAVSAIKA 931
+ H+ +L ++ Q F+ L + +N IL L F S+ S + +
Sbjct: 556 SIRLAHDHFLSNLLAQSFI----LLKPVFHCLNEILDLCHSFCSL-----VSQNLGPLDE 606
Query: 932 RCEMEVDRIEKQFDDCIVFLLRVLSFKLNVGHFPHLADLVTRINYNYFYMSDSGNL 987
R ++ + K F L ++LS N LA L+ R++YN +Y G L
Sbjct: 607 RGAAQLSILVKGFSRQSSLLFKILSSVRNHQINSDLAQLLLRLDYNKYYTQAGGTL 662
>sp|Q9D4F8|GCP4_MOUSE Gamma-tubulin complex component 4 OS=Mus musculus GN=Tubgcp4 PE=2
SV=2
Length = 667
Score = 82.0 bits (201), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 84/357 (23%), Positives = 143/357 (40%), Gaps = 25/357 (7%)
Query: 639 VYIKKQVDHIGKLILSNLMNDWRLMDE-------LAVLRAIYLLGSGDLLQHFLTVIFNK 691
V ++ VD I + +L W+LM E L +++ YLLG G+L Q F+ +
Sbjct: 323 VDFEQVVDRIRSTVAEHL---WKLMVEESDLLGQLKIIKDFYLLGRGELFQAFIDTAQHM 379
Query: 692 LDKGENWDDDFELNTLLQESIRNSADGKLLSAPDALEVLITESHGSNSDEQPSMANLAST 751
L + ++N Q+S P + E HG D +
Sbjct: 380 LKTPPTAVTEHDVNVAFQQSAHKVLLDDDNLLPLLHLTI--EYHGK--DHKADATQPREV 435
Query: 752 P-RKSHPHSFGIDGLDLLKFTYKVSWPLELIANMEAIKKYNQVMGFLLKVKRAKFALDKA 810
P R++ P G L +YKV WPL ++ ++KYN V +LL V+R + L
Sbjct: 436 PSRETSPREAPSSGWAALGLSYKVQWPLHILFTPAVLEKYNVVFKYLLSVRRVQAELQHC 495
Query: 811 RRWMWKGRSLATNSHSHKRHWLVEQKLLHFVDAFHQYVMDRVYHSAWRELCEGMAAAGSL 870
+ + L +N + W + + VD Y+ V S + +L + +
Sbjct: 496 WALQMQRKHLKSNQ-TDAVKWRLRNHMAFLVDNLQYYLQVDVLESQFSQLLHQINSTRDF 554
Query: 871 DEVIEVHEAYLLSIQRQCFVAPDKLWALIASRINSILGLALEFYSIQQTLSSSGAVSAIK 930
+ + H+ +L ++ Q F+ L + +N IL L F S+ S + +
Sbjct: 555 ESIRLAHDHFLSNLLAQSFI----LLKPVFHCLNEILDLCHSFCSL-----VSQNLGPLD 605
Query: 931 ARCEMEVDRIEKQFDDCIVFLLRVLSFKLNVGHFPHLADLVTRINYNYFYMSDSGNL 987
R ++ + K F L ++LS N LA L+ R++YN +Y G L
Sbjct: 606 ERGAAQLSILVKGFSRQSSLLFKILSSVRNHQINSDLAQLLLRLDYNKYYTQAGGTL 662
>sp|Q95ZG4|SPC98_DICDI Spindle pole body component 98 OS=Dictyostelium discoideum GN=spc98
PE=1 SV=2
Length = 813
Score = 77.4 bits (189), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 76/321 (23%), Positives = 141/321 (43%), Gaps = 39/321 (12%)
Query: 632 IMQECLTVYIKKQVDHIGKLILSNLMNDWRLMDELAVLRAIYLLGSGDLLQHFLTVIFNK 691
++QE + + ++ + + K++L N ++ M+ + L+ LLG GD +Q+ + +I
Sbjct: 471 VLQEIIELVSRQSSERLLKIVL----NRFKFMNHVKALKKYLLLGQGDFIQYLMDLIGED 526
Query: 692 LDKGENWDDDFELNTLLQESIRNSADGKLLSAPDALEVLITESHGSNSDEQPSMANLAST 751
L K + +L + +IRNS + +EQ + L
Sbjct: 527 LLKPTSQIQRHKLVGWMDTAIRNS--------------------NAQFEEQDIVNRLDIA 566
Query: 752 PRKSHPHSFGIDGLDLLKFTYKVSWPLELIANMEAIKKYNQVMGFLLKVKRAKFALDKAR 811
P G G D+ Y V PL I + I +Y ++ F+ +KR +++L
Sbjct: 567 LLPERP---GNIGWDIFSLDYHVDTPLNTILSPNDILRYKKIFHFMWGIKRVEYSLASIW 623
Query: 812 RWMWKGRSLATNS----HSHKRHWLVEQKLLHFVDAFHQYVMDRVYHSAWRELCEGM-AA 866
R + SL+ S HK H L+ +++HF+ F Y+M V +W+ L + +
Sbjct: 624 RKIRSSTSLSILSPIGGDIHKSH-LIMNEMVHFISNFQYYLMFEVLECSWKNLEKFIDQE 682
Query: 867 AGSLDEVIEVHEAYLLSIQRQCFVA-PDKLWALIASRINSILGLALEFYSIQQTLSS-SG 924
A LD++IE H YL I + F++ D + +L + ++F +Q L + S
Sbjct: 683 ATDLDQLIEAHHQYLQDICNKMFLSNSDSCYECFK----KLLSIIIKFTLLQTKLINLSI 738
Query: 925 AVSAIKARCEMEVDRIEKQFD 945
A+ K E ++ K+F+
Sbjct: 739 AIQNEKNFNETHQAQVNKEFN 759
Score = 33.9 bits (76), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 17/78 (21%), Positives = 39/78 (50%), Gaps = 15/78 (19%)
Query: 213 VQGGEV------------EEYQMLLH-IFVGSLLPYIEGLDSWLFEGMLDDPYEEMFFYA 259
++GGE+ ++ ++L+H I P + W+F+G ++DPY+E F
Sbjct: 294 MKGGEILSKIDTLSKHGDQDIRILIHNIMFKICQPLFSMIRLWMFKGEINDPYQEFFIRQ 353
Query: 260 NRAISVDKAEFWEKSYVL 277
++ ++K W++ + +
Sbjct: 354 YESVQLEKT--WKEKFAI 369
>sp|Q9USQ2|ALP6_SCHPO Spindle pole body component alp6 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=alp6 PE=1 SV=2
Length = 832
Score = 74.3 bits (181), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 95/372 (25%), Positives = 155/372 (41%), Gaps = 58/372 (15%)
Query: 638 TVYIKKQVDHIGKLILSNLMND-WRLMDELAVLRAIYLLGSGDLLQHFLTVIFNKLDKGE 696
TV K + I L+ LM + + L D L ++ LLG GD + + + N LD+
Sbjct: 480 TVVDKAYTESINHLVY--LMEEVFHLTDHLKAIKKYLLLGQGDFVDLLMESLGNSLDQPA 537
Query: 697 NWDDDFELNTLLQESIRNSADGKLLSAPDALEVLITESHGSNSDEQPSMANLASTPRKSH 756
N TL + ++ S + + S SN+ +P L +
Sbjct: 538 N--------TLFRHNLTASLESAIRS--------------SNASYEPEYV-LKRLDARLL 574
Query: 757 PHSFGIDGLDLLKFTYKVSWPLELIANMEAIKKYNQVMGFLLKVKRAKFALDKA-RRWMW 815
S G G D+ YKV P+ +I ++Y ++ FL ++KR +FAL + RR
Sbjct: 575 ELSHGETGWDVFTLEYKVDSPINVIITPYCSRQYLKIFNFLWRLKRIEFALAHSWRRVNL 634
Query: 816 KGRSLATNSHSHKRHW------LVEQKLLHFVDAFHQYVMDRVYHSAWRELCEGMAAA-G 868
R++ N K W L E ++HFV Y++ V +W+EL M
Sbjct: 635 GERNVFRNLDYTKFEWHFVSCHLAE--MIHFVCQLQYYILFEVIEISWQELQLAMEKPNA 692
Query: 869 SLDEVIEVHEAYLLSIQRQCFVAPDKLWA--LIASRINSILGLALEF-------YSIQQT 919
+LD IE HE Y+ SI + + K +++ IL + L F Y+ +
Sbjct: 693 TLDTYIEAHEKYVTSITHKGLLGGGKSRNEDSFLHQLHDILKVILNFHDAIELLYNFSCS 752
Query: 920 LS---------SSGAVSAIKARCEMEVDRIEKQFDDCIVFLLRVLSFKLNVGHFPHLADL 970
LS S+ A++A + E+ ++F + LL L+ + P + L
Sbjct: 753 LSNRIRINVPISTDALAAQYTPIKNELSNFTEEFQVRLQKLLHGLASHKD----PEMRFL 808
Query: 971 VTRINYNYFYMS 982
R+NYN FY+S
Sbjct: 809 SVRLNYNEFYVS 820
>sp|P58854|GCP3_MOUSE Gamma-tubulin complex component 3 OS=Mus musculus GN=Tubgcp3 PE=2
SV=2
Length = 905
Score = 74.3 bits (181), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 64/301 (21%), Positives = 128/301 (42%), Gaps = 32/301 (10%)
Query: 650 KLILSNLMNDWRLMDELAVLRAIYLLGSGDLLQHFLTVIFNKLDKGENWDDDFELNTLLQ 709
K +L L + L++ + +R LLG GD ++H + ++ +L + L +L+
Sbjct: 541 KYLLDVLNKKYSLLEHMQAMRRYLLLGQGDFIRHLMDLLKPELVRPATTLYQHNLTGILE 600
Query: 710 ESIRNSADGKLLSAPDALEVLITESHGSNSDEQPSMANLASTPRKSHPHSFGIDGLDLLK 769
++R A +P+ L+ L + L +P G G D+
Sbjct: 601 TAVR--ATNAQFDSPEILKRL-------------DVRLLEVSP--------GDTGWDVFS 637
Query: 770 FTYKVSWPLELIANMEAIKKYNQVMGFLLKVKRAKFALDKARRWMWKGRSLATNSHS--- 826
Y V P+ + E + Y +V FL + KR ++ L R+ L N
Sbjct: 638 LDYHVDGPIATVFTRECMSHYLRVFNFLWRAKRMEYILTDIRKGHMCNAKLLRNMPEFSG 697
Query: 827 --HKRHWLVEQKLLHFVDAFHQYVMDRVYHSAWRELCEGMAAAGSLDEVIEVHEAYLLSI 884
H+ H L + ++HF+ Y+ V +W EL + A LD +I HEA+L +I
Sbjct: 698 VLHQCHILASE-MVHFIHQMQYYITFEVLECSWDELWNRVQQAQDLDHIIAAHEAFLNTI 756
Query: 885 QRQCFVAPDKLWALIASRINSILGLALEFYSIQQTLSSSGAVSAIKARCEMEVDRIEKQF 944
+C + D ++ +++ ++ +E + Q + + A+ ++ R + E + +++
Sbjct: 757 TSRCLL--DSNSRVLLNQLRAVFDQIIELQNAQDVMYRA-ALEELQRRLQFEEKKKQREI 813
Query: 945 D 945
+
Sbjct: 814 E 814
Score = 35.4 bits (80), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Query: 223 MLLHIFVGSLLPYIEGLDSWLFEGMLDDPYEEMFFYANRAISVDKAEFWEKSYVLRQ 279
++ HI P + L W+++G L+D Y E F ++ + D+ W Y LR+
Sbjct: 412 LVQHILSLVSHPVLSFLYRWIYDGELEDTYHEFFVASDPTVKTDR--LWHDKYTLRK 466
>sp|Q96CW5|GCP3_HUMAN Gamma-tubulin complex component 3 OS=Homo sapiens GN=TUBGCP3 PE=1
SV=2
Length = 907
Score = 73.9 bits (180), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 65/301 (21%), Positives = 125/301 (41%), Gaps = 32/301 (10%)
Query: 650 KLILSNLMNDWRLMDELAVLRAIYLLGSGDLLQHFLTVIFNKLDKGENWDDDFELNTLLQ 709
K +L L + L+D + +R LLG GD ++H + ++ +L + L +L+
Sbjct: 543 KYLLDVLNKKYSLLDHMQAMRRYLLLGQGDFIRHLMDLLKPELVRPATTLYQHNLTGILE 602
Query: 710 ESIRNSADGKLLSAPDALEVLITESHGSNSDEQPSMANLASTPRKSHPHSFGIDGLDLLK 769
++R A +P+ L L + L +P G G D+
Sbjct: 603 TAVR--ATNAQFDSPEILRRL-------------DVRLLEVSP--------GDTGWDVFS 639
Query: 770 FTYKVSWPLELIANMEAIKKYNQVMGFLLKVKRAKFALDKARRWMWKGRSLATNSHS--- 826
Y V P+ + E + Y +V FL + KR ++ L R+ L N
Sbjct: 640 LDYHVDGPIATVFTRECMSHYLRVFNFLWRAKRMEYILTDIRKGHMCNAKLLRNMPEFSG 699
Query: 827 --HKRHWLVEQKLLHFVDAFHQYVMDRVYHSAWRELCEGMAAAGSLDEVIEVHEAYLLSI 884
H+ H L + ++HF+ Y+ V +W EL + A LD +I HE +L +I
Sbjct: 700 VLHQCHILASE-MVHFIHQMQYYITFEVLECSWDELWNKVQQAQDLDHIIAAHEVFLDTI 758
Query: 885 QRQCFVAPDKLWALIASRINSILGLALEFYSIQQTLSSSGAVSAIKARCEMEVDRIEKQF 944
+C + D L +++ ++ +E + Q + + A+ ++ R + E + +++
Sbjct: 759 ISRCLLDSDSRALL--NQLRAVFDQIIELQNAQDAIYRA-ALEELQRRLQFEEKKKQREI 815
Query: 945 D 945
+
Sbjct: 816 E 816
Score = 35.8 bits (81), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Query: 223 MLLHIFVGSLLPYIEGLDSWLFEGMLDDPYEEMFFYANRAISVDKAEFWEKSYVLRQ 279
++ HI P + L W+++G L+D Y E F ++ + D+ W Y LR+
Sbjct: 414 LVQHILSLVSHPVLSFLYRWIYDGELEDTYHEFFVASDPTVKTDR--LWHDKYTLRK 468
>sp|Q9XYP7|GCP2_DROME Gamma-tubulin complex component 2 homolog OS=Drosophila
melanogaster GN=Grip84 PE=1 SV=2
Length = 852
Score = 72.0 bits (175), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 86/364 (23%), Positives = 138/364 (37%), Gaps = 42/364 (11%)
Query: 649 GKLILSNLMNDWRLMDELAVLRAIYLLGSGDLLQHFLTVIFNKLDKGENWDDDFELNTLL 708
+++L L+ + LM L ++ LL GD F+ ++L K + L LL
Sbjct: 485 ARMLLDVLLTENDLMGHLQSVKRYLLLNQGDFTMQFMDACEDELTKNVDHVLPMTLENLL 544
Query: 709 QESIR-NSADGKLLSAPDALEVLITESHGSNSDEQPSMANLASTPRKSHPHSFGIDGLDL 767
++R +SA E+L + S N + PR + GL+
Sbjct: 545 GLTLRISSARNDPYKDDLHCELLPYDLVTQMSKIMKKEENWQAQPR------LDLSGLEC 598
Query: 768 LKFTYKVSWPLELIANMEAIKKYNQVMGFLLKVKRAKFALDKARRWMWKGRSLATN---- 823
FTY+V WP L+ N +I KY + L K + L K +WK S+A
Sbjct: 599 FAFTYEVKWPCSLVLNHISISKYQMLFRQLFYCKHVERQLCK----IWKENSIARQFEPQ 654
Query: 824 -SHSHKRHWLVEQKLLHFVDAFHQYVMDRVYHSAWRELCEGMAAAGSLDEVIEVHEAYLL 882
+ ++ + + Q++++ + Y+M + W E M ++D V+ +H+ +L
Sbjct: 655 AASLYRAAFTLRQRMMNAIQNLEYYMMIEIIEPNWHIFIEKMKTVENVDNVLRLHQDFLD 714
Query: 883 SIQRQCFVAPDKLWALIASRINSILGLALEFYSIQQT------LSSSGAVSAIKARCEME 936
S + C + ++ I EF I Q L S SA + E E
Sbjct: 715 SCLKNCMLTESSHLNRSIFKLCKICLKYCEFIQITQRYFQDAELRSMVRDSADSSESEQE 774
Query: 937 ---VDRIEKQFDDCIVFLLRVLSFKLNVGHF-------------PHLAD----LVTRINY 976
+IE D F RV F L + AD LV RIN+
Sbjct: 775 SLHCPQIETPLDPTDTFSERVRRFDLEFTQLLISFLKQINSMAKKNTADCFMNLVHRINF 834
Query: 977 NYFY 980
N FY
Sbjct: 835 NAFY 838
Score = 38.5 bits (88), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 21/89 (23%), Positives = 43/89 (48%), Gaps = 10/89 (11%)
Query: 199 ILDYLYKKLDEVCLVQGGEVEEYQMLLHIFVGSLLPYIEGLDSWLFEGMLDDPYEEMFFY 258
+L YL++++ + G + Q+++ + + PY+ L W+ +G++ D + E
Sbjct: 343 VLTYLHERIKRL----EGNKDAQQLIIGLVRKAAKPYMRMLQMWIQKGVIVDRHREFLVV 398
Query: 259 ANRAISVDK------AEFWEKSYVLRQLQ 281
N I D+ ++WE+ Y LR Q
Sbjct: 399 DNEVIHRDELPEHYSDDYWERRYTLRDEQ 427
>sp|Q9BSJ2|GCP2_HUMAN Gamma-tubulin complex component 2 OS=Homo sapiens GN=TUBGCP2 PE=1
SV=2
Length = 902
Score = 71.2 bits (173), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 60/268 (22%), Positives = 111/268 (41%), Gaps = 24/268 (8%)
Query: 641 IKKQVDHIGKLILSNLMNDWRLMDELAVLRAIYLLGSGDLLQHFLTVIFNKLDKG-ENWD 699
I+K ++ K++L LM + L+ L ++ +L+ GD HF+ + +L K E+
Sbjct: 488 IEKAFNYASKVLLDFLMEEKELVAHLRSIKRYFLMDQGDFFVHFMDLAEEELRKPVEDIT 547
Query: 700 DDFELNTLLQESIRNSA-------DGKLLSAPDALEVLITESHGSNSDEQPSMANLASTP 752
L ++A D K+ P L + + ++ +MA+
Sbjct: 548 PPRLEALLELALRMSTANTDPFKDDLKIDLMPHDLITQLLRVLAIETKQEKAMAH----- 602
Query: 753 RKSHPHSFGIDGLDLLKFTYKVSWPLELIANMEAIKKYNQVMGFLLKVKRAKFALDKARR 812
+ P + GL+ F Y V WPL LI N +A+ +Y + + K + L
Sbjct: 603 --ADPTELALSGLEAFSFDYIVKWPLSLIINRKALTRYQMLFRHMFYCKHVERQLCS--- 657
Query: 813 WMWKGRSLATNSHSHKRHWL-----VEQKLLHFVDAFHQYVMDRVYHSAWRELCEGMAAA 867
+W A H W + Q++L+FV Y+M V W L + + +A
Sbjct: 658 -VWISNKTAKQHSLHSAQWFAGAFTLRQRMLNFVQNIQYYMMFEVMEPTWHILEKNLKSA 716
Query: 868 GSLDEVIEVHEAYLLSIQRQCFVAPDKL 895
++D+V+ H +L + + C + +L
Sbjct: 717 SNIDDVLGHHTGFLDTCLKDCMLTNPEL 744
Score = 38.5 bits (88), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 17/72 (23%), Positives = 37/72 (51%), Gaps = 7/72 (9%)
Query: 216 GEVEEYQMLLHIFVGSLLPYIEGLDSWLFEGMLDDPYEEMFFYANRAISVDKAE------ 269
G+ + ++ L++ + PY E L+ W++ G++ DPY E F + ++ +
Sbjct: 368 GDSQAQELCLYLTKAASAPYFEVLEKWIYRGIIHDPYSE-FMVEEHELRKERIQEDYNDK 426
Query: 270 FWEKSYVLRQLQ 281
+W++ Y + Q Q
Sbjct: 427 YWDQRYTIVQQQ 438
>sp|Q921G8|GCP2_MOUSE Gamma-tubulin complex component 2 OS=Mus musculus GN=Tubgcp2 PE=2
SV=2
Length = 905
Score = 68.9 bits (167), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 70/356 (19%), Positives = 146/356 (41%), Gaps = 54/356 (15%)
Query: 605 QKNSTLPSRVLSWIQSVEPR--TTPLPVVIMQEC----------LTVY----------IK 642
Q+ + LP ++ S++Q V + +T + +++EC +Y I+
Sbjct: 430 QRYTVLPQQIPSFLQKVAGKILSTGKYLNVVRECGHDVTCPVAKEIIYTLKERAYVEQIE 489
Query: 643 KQVDHIGKLILSNLMNDWRLMDELAVLRAIYLLGSGDLLQHFLTVIFNKLDKG------- 695
K ++ K++L LM + L+ L ++ +L+ GD HF+ + +L K
Sbjct: 490 KAFNYASKVLLDFLMEEKELVAHLRSIKRYFLMDQGDFFVHFMDLTEEELRKPVEDIILT 549
Query: 696 ---ENWDDDFELNTLLQESIRNSADGKLLSAPDALEVLITESHGSNSDEQPSMANLASTP 752
+ ++T + ++ D K+ P L + + ++ +M +
Sbjct: 550 RLEALLELALRMSTANTDPFKD--DLKIELMPHDLITQLLRVLAIETKQEKAMTH----- 602
Query: 753 RKSHPHSFGIDGLDLLKFTYKVSWPLELIANMEAIKKYNQVMGFLLKVKRAKFALDKARR 812
+ P + GL+ F Y V WPL LI N +A+ +Y + + K + L
Sbjct: 603 --ADPTELTLSGLEAFSFDYMVKWPLSLIINRKALTRYQMLFRHMFYCKHVERQLCS--- 657
Query: 813 WMWKGRSLATNSHSHKRHWL-----VEQKLLHFVDAFHQYVMDRVYHSAWRELCEGMAAA 867
+W A H W + Q++L+FV Y+M V W L + + +A
Sbjct: 658 -VWISNKTAKQHALHSAKWFAGAFTLRQRMLNFVQNIQYYMMFEVMEPTWHILEKNLKSA 716
Query: 868 GSLDEVIEVHEAYLLSIQRQCFVAPDKLWALIASRINSILGLALEFYSIQQTLSSS 923
++D+V+ H ++L + + C + +L + + ++ + + F + Q + S
Sbjct: 717 SNIDDVLGHHTSFLDNCLKDCMLTNPELLKVFS----KLMSVCVMFTNCMQKFTQS 768
Score = 37.0 bits (84), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 40/205 (19%), Positives = 73/205 (35%), Gaps = 59/205 (28%)
Query: 216 GEVEEYQMLLHIFVGSLLPYIEGLDSWLFEGMLDDPYEEMFFYANRAISVDKAE------ 269
G+ + ++ L++ + PY E L+ W++ G++ DPY E F + +K +
Sbjct: 368 GDSQAQELCLYLTKAASAPYFEILEKWIYRGIIHDPYSE-FMVEEHELRKEKIQEDYNDK 426
Query: 270 FWEKSYVLRQLQCWKLDAESSSLTSESSHVRETNEKRQNGLRESISLSSSVKGLQACPLF 329
+W++ Y + Q P F
Sbjct: 427 YWDQRYTVLP--------------------------------------------QQIPSF 442
Query: 330 IKDIAKSIISAGKSLQLIRH----VSSKSNDDRIECLGNFNYGSDWSTVHRGQSIAGLTL 385
++ +A I+S GK L ++R V+ + I L Y + + + A L
Sbjct: 443 LQKVAGKILSTGKYLNVVRECGHDVTCPVAKEIIYTLKERAYVEQ---IEKAFNYASKVL 499
Query: 386 SEIFCISLAGLIGHGDHIFRYFWQD 410
+ F + L+ H I RYF D
Sbjct: 500 LD-FLMEEKELVAHLRSIKRYFLMD 523
>sp|Q5R5J6|GCP2_PONAB Gamma-tubulin complex component 2 OS=Pongo abelii GN=TUBGCP2 PE=2
SV=1
Length = 902
Score = 67.4 bits (163), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 59/268 (22%), Positives = 110/268 (41%), Gaps = 24/268 (8%)
Query: 641 IKKQVDHIGKLILSNLMNDWRLMDELAVLRAIYLLGSGDLLQHFLTVIFNKLDKG-ENWD 699
I+K ++ K++L LM + L+ L ++ +L+ GD HF+ + +L K E+
Sbjct: 488 IEKAFNYASKVLLDFLMEEKELVAHLRSIKRYFLMDQGDFFVHFMDLAEEELRKPVEDIT 547
Query: 700 DDFELNTLLQESIRNSA-------DGKLLSAPDALEVLITESHGSNSDEQPSMANLASTP 752
L ++A D K+ P L + + ++ +MA+
Sbjct: 548 PPRLEALLELALRMSTANTDPFKDDLKIDLMPHDLITQLLRVLAIETKQEKAMAH----- 602
Query: 753 RKSHPHSFGIDGLDLLKFTYKVSWPLELIANMEAIKKYNQVMGFLLKVKRAKFALDKARR 812
+ P + GL+ F Y V WPL LI N +A+ +Y + + K + L
Sbjct: 603 --ADPTELTLSGLEAFSFDYIVKWPLSLIINRKALTRYQMLFRHMFYCKHVERQLCS--- 657
Query: 813 WMWKGRSLATNSHSHKRHWL-----VEQKLLHFVDAFHQYVMDRVYHSAWRELCEGMAAA 867
+W A W + Q++L+FV Y+M V W L + + +A
Sbjct: 658 -VWISNKTAKQHSLPSAQWFAGAFTLRQRMLNFVQNIQYYMMFEVMEPTWHILEKNLKSA 716
Query: 868 GSLDEVIEVHEAYLLSIQRQCFVAPDKL 895
++D+V+ H +L + + C + +L
Sbjct: 717 SNIDDVLGYHTGFLDTCLKDCMLTNPEL 744
Score = 38.5 bits (88), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 40/205 (19%), Positives = 74/205 (36%), Gaps = 59/205 (28%)
Query: 216 GEVEEYQMLLHIFVGSLLPYIEGLDSWLFEGMLDDPYEEMFFYANRAISVDKAE------ 269
G+ + ++ L++ + PY E L+ W++ G++ DPY E F + ++ +
Sbjct: 368 GDSQAQELCLYLTKAASAPYFEVLEKWIYRGIIHDPYSE-FMVEEHELRKERIQEDYNDK 426
Query: 270 FWEKSYVLRQLQCWKLDAESSSLTSESSHVRETNEKRQNGLRESISLSSSVKGLQACPLF 329
+W++ Y + Q Q P F
Sbjct: 427 YWDQRYTIVQ--------------------------------------------QQIPSF 442
Query: 330 IKDIAKSIISAGKSLQLIRH----VSSKSNDDRIECLGNFNYGSDWSTVHRGQSIAGLTL 385
++ +A I+S GK L ++R V+ + I L Y + + + A L
Sbjct: 443 LQKMADKILSTGKYLNVVRECGHDVTCPVAKEIIYTLKERAY---VEQIEKAFNYASKVL 499
Query: 386 SEIFCISLAGLIGHGDHIFRYFWQD 410
+ F + L+ H I RYF D
Sbjct: 500 LD-FLMEEKELVAHLRSIKRYFLMD 523
>sp|O73787|GCP3_XENLA Gamma-tubulin complex component 3 homolog OS=Xenopus laevis
GN=tubgcp3 PE=1 SV=1
Length = 906
Score = 67.0 bits (162), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 61/280 (21%), Positives = 115/280 (41%), Gaps = 39/280 (13%)
Query: 650 KLILSNLMNDWRLMDELAVLRAIYLLGSGDLLQHFLTVIFNKLDKGENWDDDFELNTLLQ 709
K +L L ++ L++ + +R LLG GD ++H + ++ +L + L +L+
Sbjct: 542 KYLLDVLNKNYNLLEHMQAMRRYLLLGQGDFIRHLMDLLKPELVRPATTLYQHNLTGILE 601
Query: 710 ESIRNSADGKLLSAPDALEVLITESHGSNSDEQPSMANLASTPRKSHPHSFGIDGLDLLK 769
++R A P+ L+ L + L +P G G D+
Sbjct: 602 TAVR--ATNAQFDNPEILKRL-------------DVRLLEVSP--------GDTGWDVFS 638
Query: 770 FTYKVSWPLELIANMEAIKKYNQVMGFLLKVKRAKFALDKARRWMWKGRSLAT------- 822
Y V P+ + E + Y +V FL + KR ++ L +WKG
Sbjct: 639 LDYHVDGPIATVFTRECMSHYLRVFNFLWRAKRMEYILTD----IWKGHMCNAKLLKGMP 694
Query: 823 --NSHSHKRHWLVEQKLLHFVDAFHQYVMDRVYHSAWRELCEGMAAAGSLDEVIEVHEAY 880
+ H+ H L + ++HF+ Y+ V +W EL + A LD +I H+ +
Sbjct: 695 ELSGVLHQCHILASE-MVHFIHQMQYYITFEVLECSWDELWNKVLKAQDLDHIIAAHDVF 753
Query: 881 LLSIQRQCFVAPDKLWALIASRINSILGLALEFYSIQQTL 920
L +I +C + D + +++ ++ +EF + Q L
Sbjct: 754 LDTIISRCLL--DSESRALLNQLRAVFDQIIEFQNAQDAL 791
Score = 35.4 bits (80), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Query: 223 MLLHIFVGSLLPYIEGLDSWLFEGMLDDPYEEMFFYANRAISVDKAEFWEKSYVLRQ 279
++ HI P + L W+++G L+D Y E F ++ + D+ W Y LR+
Sbjct: 413 LVQHILGLVAYPILNFLYRWIYDGELEDTYHEFFVASDPVVKTDR--LWHDKYSLRK 467
>sp|Q9M350|GCP4_ARATH Gamma-tubulin complex component 4 homolog OS=Arabidopsis thaliana
GN=At3g53760 PE=2 SV=2
Length = 745
Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 55/238 (23%), Positives = 101/238 (42%), Gaps = 33/238 (13%)
Query: 762 IDGLDLLKFTYKVSWPLELIANMEAIKKYNQVMGFLLKVKRAKFALDKA----------- 810
+DG D + Y V WP++L E + KY +V +L+++KR + L+K+
Sbjct: 503 VDGWDAIALEYSVDWPMQLFFTQEVLSKYLKVFQYLIRLKRTQMELEKSWASVMHQDHIE 562
Query: 811 ----RRWMWKGRSLATNSHSHKRHWLVEQKLLHFVDAFHQYVMDRVYHSAWRELCEGMAA 866
R+ G + + W V + + + Y+ V S W+ L +
Sbjct: 563 SAQHRKDGLNGSTSQQRRQGIRPMWRVREHMAFLIRNLQFYIQVDVIESQWKVLQTHIHD 622
Query: 867 AGSLDEVIEVHEAYLLSIQRQCFVAPDKLWALIASRI-NSILGLALEF-YSIQQTLSSSG 924
+ E++ H+ YL ++ Q F+ + SRI +SI+ L L+F ++I+ S+
Sbjct: 623 SQDFTELVGFHQEYLSALISQSFLDIGSV-----SRILDSIMKLCLQFCWNIENQESNPN 677
Query: 925 AVSAIKARCEMEVDRIEKQFDDCIVFLLRVLSFKLNVG--HFPHLADLVTRINYNYFY 980
E++ I ++F+ L +L G P L + R+N+N FY
Sbjct: 678 TS---------ELENIAEEFNKKSNSLYTILRSSKLAGSQRAPFLRRFLLRLNFNSFY 726
>sp|Q95ZG3|SPC97_DICDI Spindle pole body component 97 OS=Dictyostelium discoideum GN=spc97
PE=2 SV=2
Length = 1335
Score = 62.8 bits (151), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/224 (21%), Positives = 96/224 (42%), Gaps = 16/224 (7%)
Query: 764 GLDLLKFTYKVSWPLELIANMEAIKKYNQVMGFLLKVKRAKFAL------DKARRWMWKG 817
G++ L F Y V WPL LI + +++ KY + L K + L + RR +
Sbjct: 916 GIESLAFNYNVGWPLSLIISRKSLIKYQIIFRHLFLCKHVEKVLVDTWSQHQFRRSSYNK 975
Query: 818 RSLATN-SHSHKRHWLVEQKLLHFVDAFHQYVMDRVYHSAWRELCEGMAAAGSLDEVIEV 876
L+T S +H L+ +++HF+ Y+M V W ++ + + ++D+VI +
Sbjct: 976 PGLSTLLSFTH----LLRHRMIHFLQNLEYYMMLEVLEPNWNKMKNSIKTSKTVDDVIRI 1031
Query: 877 HEAYLLSIQRQCFVAPDKLWALIASRINSILGLALEFYSIQQTLSSSGAVSAIKARCEME 936
H +L + +C + KL ++ + L + F + + + + +
Sbjct: 1032 HNDFLETCLTECMLTDTKLVNILM----KFMSLCITFANFTNEMMQDEK-NIDTEQIKKT 1086
Query: 937 VDRIEKQFDDCIVFLLRVLSFKLNVGHFPHLADLVTRINYNYFY 980
+ E +F + L+ L H+ L+ R++YN +Y
Sbjct: 1087 ISSSENKFHAILKVLMDTLKSFSKTESNRHMIHLIHRLDYNGYY 1130
Score = 46.2 bits (108), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 49/88 (55%)
Query: 641 IKKQVDHIGKLILSNLMNDWRLMDELAVLRAIYLLGSGDLLQHFLTVIFNKLDKGENWDD 700
I+K D+ ++L+ L+N+ L+ L ++ +LL GD HF+ +++L K + +
Sbjct: 754 IEKAYDYASGILLNLLINERHLISRLKAIKHYFLLCKGDFFSHFMDTTYDELKKPLDQIN 813
Query: 701 DFELNTLLQESIRNSADGKLLSAPDALE 728
++N+LLQ S+R S+ + D LE
Sbjct: 814 MVKMNSLLQLSLRTSSISEEDEFKDDLE 841
Score = 40.4 bits (93), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 7/68 (10%)
Query: 224 LLHIFV-GSLLPYIEGLDSWLFEGMLDDPYEEMFFYANRAISVDKAE------FWEKSYV 276
L H + + LP++E LD W+ +G++ D Y E N + D +WE+ Y
Sbjct: 592 LFHYLIKATTLPFLEMLDLWIHQGIIRDTYFEFMIEENTDLKRDNINRDFNDLYWEQRYQ 651
Query: 277 LRQLQCWK 284
+RQ Q K
Sbjct: 652 IRQDQIPK 659
>sp|Q9VKU7|GCP4_DROME Gamma-tubulin complex component 4 homolog OS=Drosophila
melanogaster GN=Grip75 PE=1 SV=2
Length = 650
Score = 58.2 bits (139), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 60/328 (18%), Positives = 136/328 (41%), Gaps = 27/328 (8%)
Query: 657 MNDWRLMDELAVLRAIYLLGSGDLLQHFLTVIFNKLDKGENWDDDFELNTLLQESIRNSA 716
+N+ L ++ +++ +LLG G+ F + + ++ T +E +N
Sbjct: 338 VNEVDLERQMGLIKDFFLLGRGEFYLEFCSQMVGTME------------TYREERFKN-- 383
Query: 717 DGKLLSAPDALEVLITESHGSNSDEQPSMANLASTPRKSHPHSFGIDGLDLLKFTYKVSW 776
+ E+ T + ++ ++ S+ ST F L L Y+ W
Sbjct: 384 ------VTRSFELAATVTGITDDLDKFSLICQRSTSEPDDTSDFNF--LQGLSLKYEYEW 435
Query: 777 PLELIANMEAIKKYNQVMGFLLKVKRAKFALDKA-RRWMWKGRSLATNSHSHKRHWLVEQ 835
PL L+ + I++YN + FLL ++ ++ + + + W+ +S A + + + +
Sbjct: 436 PLNLLFSPTTIERYNNIFRFLLIIRTYQYEIQRVWAKQTWRAKS-AKDVPPNNKIITLRN 494
Query: 836 KLLHFVDAFHQYVMDRVYHSAWRELCEGMAAAGSLDEVIEVHEAYLLSIQRQCFV---AP 892
L+ F++ Y+ V S + L + + + + H +L ++ CF+ +
Sbjct: 495 YLMFFLNNMQYYIQVDVLESQFGILMNVIKSRSDFEVIQRAHTVFLANVLSHCFLLNESE 554
Query: 893 DKLWALIASRINSILGLALEFYSIQQTLSSSGAVSAIKARCEMEVDRIEKQFDDCIVFLL 952
+L + N I G L+ + I + + E EVD++ + F I L+
Sbjct: 555 TQLNVTGSQNRNPIYGTLLKLFGICEKFAHMTQTKDPSDDLEDEVDQLNESFGVQIASLI 614
Query: 953 RVLSFKLNVGHFPHLADLVTRINYNYFY 980
++L + L+ L+ R+++N ++
Sbjct: 615 QLLVDVKSASCLGPLSQLLLRLDFNCWF 642
>sp|Q9XYP8|GCP3_DROME Gamma-tubulin complex component 3 homolog OS=Drosophila
melanogaster GN=l(1)dd4 PE=1 SV=2
Length = 917
Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 59/251 (23%), Positives = 110/251 (43%), Gaps = 36/251 (14%)
Query: 650 KLILSNLMNDWRLMDELAVLRAIYLLGSGDLLQHFLTVIFNKLDKG--ENWDDDFELNTL 707
K +L ++ +L+D L +R LLG GD + + + N+L++ + + +D L ++
Sbjct: 537 KHVLDIMVGPHKLLDHLHGMRRYLLLGQGDFISILIENMKNELERPGLDIYAND--LTSM 594
Query: 708 LQESIRNSADGKLLSAPDALEVLITESHGSNSDEQPSMANLASTPRKSHPHSFGIDGLDL 767
L ++R + PD L +H ++P ++ G ++
Sbjct: 595 LDSALRCT--NAQYDDPDIL------NHLDVIVQRPFNGDI---------------GWNI 631
Query: 768 LKFTYKVSWPLELIANMEAIKKYNQVMGFLLKVKRAKFALDKA--RRWMWKGRSLAT--- 822
+ Y V PL + + Y + L ++K +F L + M ++L T
Sbjct: 632 ISLQYIVHGPLAAMLE-STMPTYKVLFKPLWRMKHMEFVLSMKIWKEQMGNAKALRTMKS 690
Query: 823 --NSHSHKRHWLVEQKLLHFVDAFHQYVMDRVYHSAWRELCEGMAAAGSLDEVIEVHEAY 880
SH+ + L +++HF+ YV+ V W EL + M A +LDE++E HE +
Sbjct: 691 EIGKASHRLN-LFTSEIMHFIHQMQYYVLFEVIECNWVELQKKMQKATTLDEILEAHEKF 749
Query: 881 LLSIQRQCFVA 891
L +I CFV+
Sbjct: 750 LQTILVGCFVS 760
>sp|Q9SC88|GCP4_MEDTR Gamma-tubulin complex component 4 homolog OS=Medicago truncatula
GN=85P PE=2 SV=1
Length = 739
Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 73/312 (23%), Positives = 122/312 (39%), Gaps = 62/312 (19%)
Query: 645 VDHIGKLILSNLMNDWRLM-------DELAVLRAIYLLGSGDLLQHFL---TVIFNKLDK 694
VD I + S+L W+L+ L L+ +LL GD Q FL + +
Sbjct: 363 VDSIQAIAASHL---WQLVVVRADLNGHLKALKDYFLLAKGDFFQCFLEESRQLMRLPPR 419
Query: 695 GENWDDDF-------ELNTLLQE-------SIRNSADGKLLSAPDALEVLITESHGSNSD 740
+ D L T+ +E S+R + G + P L V S ++
Sbjct: 420 QSTAEADLMVPFQLASLKTIGEEDKYFSKVSLRMPSYG-ITVKPSLLNVPKATSAAADGI 478
Query: 741 EQPSMANLASTPRKSHPHSFGIDGLDLLKFTYKVSWPLELIANMEAIKKYNQVMGFLLKV 800
S++N +S +DG D + Y + WPL L E + +Y +V +LL++
Sbjct: 479 SGASISNASS--------EMSVDGWDGIALEYSIEWPLHLFFTQEVLSRYLKVFQYLLRL 530
Query: 801 KRAKFALDKARRW---MWKGRSL-ATNSHSH--------------KRHWLVEQKLLHFVD 842
KR + L+K W M + S+ A N S + W V + + +
Sbjct: 531 KRTQMELEKL--WASVMHQYHSIFAKNKKSDQDKSPITQQRDQRFRSMWRVREHMAFLIR 588
Query: 843 AFHQYVMDRVYHSAWRELCEGMAAAGSLDEVIEVHEAYLLSIQRQCFVAPDKLWALIASR 902
Y+ V S W L + + E++ H+ YL ++ Q F+ + SR
Sbjct: 589 NLQFYIQVDVIESQWNILQSHIQDSHDFTELVGFHQEYLSALISQTFLDIGSV-----SR 643
Query: 903 I-NSILGLALEF 913
I + I+ L L+F
Sbjct: 644 ILDGIMKLCLQF 655
>sp|Q9Y705|ALP4_SCHPO Spindle pole body component alp4 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=alp4 PE=1 SV=1
Length = 784
Score = 50.8 bits (120), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 33/150 (22%), Positives = 72/150 (48%), Gaps = 6/150 (4%)
Query: 762 IDGLDLLKFTYKVSWPLELIANMEAIKKYNQVMGFLLKVKRAKFALDK-----ARRWMWK 816
I+G + ++ YKV +PL LI + +AI +Y + + L ++ + L+ ++ W+
Sbjct: 560 INGFETMQLCYKVPFPLSLILSRKAIIRYQLLFRYFLLLRHVEMQLENSWVQHSKNSAWR 619
Query: 817 GRSLATNSHSHKRH-WLVEQKLLHFVDAFHQYVMDRVYHSAWRELCEGMAAAGSLDEVIE 875
S KR+ WL+ ++L FV Y V + W + + A ++D +++
Sbjct: 620 LNSSNAKIEQWKRNSWLLRTRMLSFVQKIIYYTTSEVIETHWGKFMGELENARTVDNLMQ 679
Query: 876 VHEAYLLSIQRQCFVAPDKLWALIASRINS 905
H +L + ++C + +L + + +N+
Sbjct: 680 EHIDFLDTCLKECMLTNSRLLKVQSKLLNT 709
Score = 43.1 bits (100), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 42/73 (57%), Gaps = 6/73 (8%)
Query: 215 GGEVEEYQMLLHIFVGSLLPYIEGLDSWLFEGMLDDPYEEMFFYANRAIS---VDK---A 268
G+ ++L ++ + PY + L+ W+ G+++DPY+E ++ I+ +D+
Sbjct: 270 AGDPVARKILTYLLREASRPYTKMLNEWIHLGLVNDPYDEFMIKIHKGITSMQLDEDYTD 329
Query: 269 EFWEKSYVLRQLQ 281
E+WEK YV+R+ Q
Sbjct: 330 EYWEKRYVIREDQ 342
>sp|B1Y6Q4|COXX_LEPCP Protoheme IX farnesyltransferase OS=Leptothrix cholodnii (strain
ATCC 51168 / LMG 8142 / SP-6) GN=ctaB PE=3 SV=1
Length = 305
Score = 39.7 bits (91), Expect = 0.13, Method: Composition-based stats.
Identities = 37/134 (27%), Positives = 58/134 (43%), Gaps = 22/134 (16%)
Query: 125 VSAWLKM--FRGIALKEEM---KITESNV------GNTPTLLGLASSLSSLCSGGEYLLQ 173
++AWL + F G A+ + +T N+ G P LLG A+ + G L
Sbjct: 123 LTAWLTLGTFVGYAVIYTVVLKPLTPQNIVIGGISGAMPPLLGWAAMTGEVGPEGLILCL 182
Query: 174 IVDGAIPQVCFQFNMPVPAAQVAVHILDYLYKKLDEVCLVQGGEVEEYQMLLHIFV---G 230
I+ F + P A DY L + + G E Q+LL+ FV G
Sbjct: 183 II--------FLWTPPHFWALALYRAEDYARAGLPMLPVTHGNEFTRLQILLYTFVLLAG 234
Query: 231 SLLPYIEGLDSWLF 244
+LLP+++G+ WL+
Sbjct: 235 TLLPFVQGMSGWLY 248
>sp|Q9NHB0|BGBP1_DROME Gram-negative bacteria-binding protein 1 OS=Drosophila melanogaster
GN=GNBP1 PE=2 SV=2
Length = 494
Score = 38.9 bits (89), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 32/54 (59%), Gaps = 3/54 (5%)
Query: 797 LLKVKRAKFALDKARRWMWKGRSLATNSHSHKRHWLVEQKLLHFVDAFHQYVMD 850
+L++ R K ++ ++ G L+T++H + WL ++K+ HF D FH Y +D
Sbjct: 334 VLRMPRGKLVDGRS---LYGGPVLSTDAHQREDLWLSKRKISHFGDDFHTYSLD 384
>sp|A1TU04|COXX_ACIAC Protoheme IX farnesyltransferase OS=Acidovorax citrulli (strain
AAC00-1) GN=ctaB PE=3 SV=1
Length = 302
Score = 36.6 bits (83), Expect = 1.2, Method: Composition-based stats.
Identities = 27/99 (27%), Positives = 45/99 (45%), Gaps = 11/99 (11%)
Query: 149 GNTPTLLGLASSLSSLCSGGEYLLQIVDGAIPQVCFQFNMPVPAAQVAVHILDYLYKKLD 208
G P +LG AS + G E L+ + + F + P A + DY L
Sbjct: 160 GAMPPVLGWASMTGDV--GPEPLILFL------IIFLWTPPHFWALALYRVEDYRKSGLP 211
Query: 209 EVCLVQGGEVEEYQMLLHIFV---GSLLPYIEGLDSWLF 244
+ + G E Q+LL+ F+ G L+P++ G+ SW++
Sbjct: 212 MLPVTHGNEFTRLQVLLYTFILFAGCLMPFVYGMSSWIY 250
>sp|P38863|SPC97_YEAST Spindle pole body component SPC97 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=SPC97 PE=1 SV=1
Length = 823
Score = 36.2 bits (82), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 64/276 (23%), Positives = 110/276 (39%), Gaps = 64/276 (23%)
Query: 637 LTVYIKKQVDHIGKLILSNLMNDWRLMDELAVLRAIYL-LGSGDLLQHFLTVIFNKL--- 692
L +Y+ K ++ L + L++ L L+ I+L SG + FLT +L
Sbjct: 390 LELYVDKCYSRANEIFLKLFFQGYDLINVLKHLQQIFLGYQSGHNVLKFLTKNMGELTKH 449
Query: 693 ---DKGENWD---DDFEL-------NTLLQESIRNSADGKLLSAPDALEVL------ITE 733
D N+D +FEL N L+++ + D + L P L + E
Sbjct: 450 YRNDNNANYDKLLQNFELERQSENPNNLMRQLLMIQFDTETL--PQVLSHYLQIYPEVPE 507
Query: 734 SHGSNSDEQPSM---------ANLASTPRKSHPHSFGIDGLDL---------LKFTYKVS 775
++ +N D P M A L K ++ L+L LKF +
Sbjct: 508 NNSANDDSDPLMHANNFKNMNAILFDELSKERTGAYHGSNLELYTPKSAIYHLKFDINIP 567
Query: 776 WPLELIANMEAIKKYNQVMGFLLKVKRAKFALDKARRWM-------WKGRSLATNSHSHK 828
+PL +I + + KY ++ + L ++ LD+ WM WK R SH+ K
Sbjct: 568 YPLNIIISRTCMIKYQIILRYQLVLQYHSRLLDET--WMDLNKTPSWKYRGY---SHTVK 622
Query: 829 RHWLVEQKLLH---------FVDAFHQYVMDRVYHS 855
R + ++LH ++ F+Q V+D+ +S
Sbjct: 623 RRIVRATRVLHAKMNHFIKTIMEYFNQNVIDKEVYS 658
>sp|O47423|NU4M_BRAFL NADH-ubiquinone oxidoreductase chain 4 OS=Branchiostoma floridae
GN=ND4 PE=3 SV=1
Length = 452
Score = 34.3 bits (77), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 62/140 (44%), Gaps = 19/140 (13%)
Query: 58 FYWDESVRSFCVKTGIYVTHLSLKSVHV---VLNQFIYAATCLKLVEISVTRVE----TT 110
F+W + +F VK +Y HL L HV + + A LKL + RV T
Sbjct: 191 FWWVGCILAFLVKLPLYGVHLWLPKAHVEAPIAGSMVLAGVLLKLGGYGMMRVSLMWGAT 250
Query: 111 GRISSPTLRAFSSAVSAW-LKMFRGIALKE-EMK--ITESNVGNTPTLLGLASSLSSLCS 166
+SS A++ W + + GI L++ ++K I S+VG+ ++G L+ +
Sbjct: 251 AMLSSEVFL----ALALWGIVVMGGICLRQTDLKSLIAYSSVGHMALVVG--GVLTGVAW 304
Query: 167 G--GEYLLQIVDGAIPQVCF 184
G G +L I G + F
Sbjct: 305 GYNGAMVLMIAHGLVSSCLF 324
>sp|O79421|NU4M_BRALA NADH-ubiquinone oxidoreductase chain 4 OS=Branchiostoma lanceolatum
GN=ND4 PE=3 SV=1
Length = 452
Score = 34.3 bits (77), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 62/140 (44%), Gaps = 19/140 (13%)
Query: 58 FYWDESVRSFCVKTGIYVTHLSLKSVHV---VLNQFIYAATCLKLVEISVTRVE----TT 110
F+W + +F VK +Y HL L HV + + A LKL + RV T
Sbjct: 191 FWWVGCILAFLVKLPLYGVHLWLPKAHVEAPIAGSMVLAGVLLKLGGYGMMRVSLMWGAT 250
Query: 111 GRISSPTLRAFSSAVSAW-LKMFRGIALKE-EMK--ITESNVGNTPTLLGLASSLSSLCS 166
+SS A++ W + + GI L++ ++K I S+VG+ ++G L+ +
Sbjct: 251 AMLSSEVFL----ALALWGIVVMGGICLRQTDLKSLIAYSSVGHMALVVG--GVLTGVAW 304
Query: 167 G--GEYLLQIVDGAIPQVCF 184
G G +L I G + F
Sbjct: 305 GYNGAMVLMIAHGLVSSCLF 324
>sp|A1WBL5|COXX_ACISJ Protoheme IX farnesyltransferase OS=Acidovorax sp. (strain JS42)
GN=ctaB PE=3 SV=1
Length = 306
Score = 34.3 bits (77), Expect = 5.8, Method: Composition-based stats.
Identities = 25/99 (25%), Positives = 44/99 (44%), Gaps = 11/99 (11%)
Query: 149 GNTPTLLGLASSLSSLCSGGEYLLQIVDGAIPQVCFQFNMPVPAAQVAVHILDYLYKKLD 208
G P +LG A+ + G E L+ + + F + P A + DY L
Sbjct: 164 GAMPPVLGWAAMTGEV--GPEALILFL------IIFLWTPPHFWALALYRVEDYRKSGLP 215
Query: 209 EVCLVQGGEVEEYQMLLH---IFVGSLLPYIEGLDSWLF 244
+ + G E Q+ L+ +F G L+P++ G+ SW++
Sbjct: 216 MLPVTHGNEFTRLQVFLYTLILFAGCLMPFVYGMSSWIY 254
>sp|B9MF14|COXX_ACIET Protoheme IX farnesyltransferase OS=Acidovorax ebreus (strain TPSY)
GN=ctaB PE=3 SV=1
Length = 306
Score = 34.3 bits (77), Expect = 5.8, Method: Composition-based stats.
Identities = 25/99 (25%), Positives = 44/99 (44%), Gaps = 11/99 (11%)
Query: 149 GNTPTLLGLASSLSSLCSGGEYLLQIVDGAIPQVCFQFNMPVPAAQVAVHILDYLYKKLD 208
G P +LG A+ + G E L+ + + F + P A + DY L
Sbjct: 164 GAMPPVLGWAAMTGEV--GPEALILFL------IIFLWTPPHFWALALYRVEDYRKSGLP 215
Query: 209 EVCLVQGGEVEEYQMLLH---IFVGSLLPYIEGLDSWLF 244
+ + G E Q+ L+ +F G L+P++ G+ SW++
Sbjct: 216 MLPVTHGNEFTRLQVFLYTLILFAGCLMPFVYGMSSWIY 254
>sp|Q21XT4|COXX_RHOFD Protoheme IX farnesyltransferase OS=Rhodoferax ferrireducens
(strain DSM 15236 / ATCC BAA-621 / T118) GN=ctaB PE=3
SV=1
Length = 298
Score = 33.5 bits (75), Expect = 9.1, Method: Composition-based stats.
Identities = 26/99 (26%), Positives = 43/99 (43%), Gaps = 11/99 (11%)
Query: 149 GNTPTLLGLASSLSSLCSGGEYLLQIVDGAIPQVCFQFNMPVPAAQVAVHILDYLYKKLD 208
G P +LG A+ + G E L+ + + F + P A + DY L
Sbjct: 156 GAMPPVLGWAAMAGDV--GPEALILFL------IIFLWTPPHFWALALYRVEDYRKSGLP 207
Query: 209 EVCLVQGGEVEEYQMLLHIFV---GSLLPYIEGLDSWLF 244
+ + G E +LL+ F+ L+PY+ G+ SWL+
Sbjct: 208 MLPVTHGNEFTRLMVLLYTFILFAACLMPYVYGMSSWLY 246
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.135 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 360,654,441
Number of Sequences: 539616
Number of extensions: 14975891
Number of successful extensions: 34713
Number of sequences better than 100.0: 47
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 26
Number of HSP's that attempted gapping in prelim test: 34606
Number of HSP's gapped (non-prelim): 108
length of query: 1006
length of database: 191,569,459
effective HSP length: 128
effective length of query: 878
effective length of database: 122,498,611
effective search space: 107553780458
effective search space used: 107553780458
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 66 (30.0 bits)